cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12003873.v1
title: Mescosom inventory data at week 12

description: Wide format raw and derived data from mesocosm experiments for paper: Brown et al. 2020. Energetic context determines species and community responses to ocean acidification. <i>Accepted </i>in Ecology. <br><br>Marine fouling species abundances and counts, pH values, diversity, community level metrics for the final week of the experiment (week 12). These are from the insides of the mesocosms, not on the tiles. <br><br>Generally:<br>"num_serpulid" = number of individuals found in the mesocosm<br>"serpulid" = % cover of serpulids found on in the mesocosm<br>
DOI: 10.6084/m9.figshare.12003882.v1
title: Tile-level data at week 12

description: Wide format raw and derived data from mesocosm experiments for paper: Brown et al. 2020. Energetic context determines species and community responses to ocean acidification. <i>Accepted </i>in Ecology. <br><br>Marine fouling species abundances and counts, pH values, diversity, community level metrics for the final week of the experiment (week 12). These are from the tiles, not the insides of the mesocosms. <br><br>Generally:<br>"num_serpulid" = number of individuals found on the tiles<br>"serpulid" = % cover of serpulids found on the tiles<br>
DOI: 10.6084/m9.figshare.12003849
title: Palliative care physicians and Palliative radiotherapy, knowledge and barriers for referring: A cross-sectional study.

description: A cross-sectional study based on a 15-item questionnaire.The survey included three sections: (1) respondent characteristics; (2) factors influencing referral for Palliative Radiotherapy and (3) knowledge in Palliative Radiotherapy and access to continuing medical education. The questionnaire was pilot tested in a group of physicians (n=6) in order to stablish face validity, ease of completion, content and completion time of 5-10 minutes. Knowledge about Palliative radiotherapy was assessed through the score achieved by respondents from a list of fourteen possible indications with different grades of recommendation.
DOI: 10.6084/m9.figshare.12003849.v1
title: Palliative care physicians and Palliative radiotherapy, knowledge and barriers for referring: A cross-sectional study.

description: A cross-sectional study based on a 15-item questionnaire.The survey included three sections: (1) respondent characteristics; (2) factors influencing referral for Palliative Radiotherapy and (3) knowledge in Palliative Radiotherapy and access to continuing medical education. The questionnaire was pilot tested in a group of physicians (n=6) in order to stablish face validity, ease of completion, content and completion time of 5-10 minutes. Knowledge about Palliative radiotherapy was assessed through the score achieved by respondents from a list of fourteen possible indications with different grades of recommendation.
DOI: 10.6084/m9.figshare.12003822
title: Reviewing the far-reaching ecological impacts of human-induced terrigenous sedimentation on shallow marine ecosystems in a northern-New Zealand embayment

description: Human settlement in Bay of Islands, New Zealand, beginning ∼1300 AD, wrought immense, conspicuous and enduring change to local shallow-water marine ecologies, this review addressing those transformations attributable to increased rates of anthropogenically induced, land-derived sedimentation. Elevated silt inflow, particularly after the late-1800s, in course led to ∼130% expansion in mangrove (<i>Avicennia marina</i>) cover, with concomitant loss of saltmarsh, uppershore coarse-shell beaches/cheniers, and (probably) intertidal seagrass (<i>Zostera muelleri</i>). Sedimentation also led to widespread loss of estuarine shellfish habitat, and, although not necessarily categorically causal, seems, at the same time to have contributed to such degradation among cockle (<i>Austrovenus stutchburyi</i>) populations that few individuals attain their potential size. Most changes, many seemingly irreversible, can be described as ecologically catastrophic, with ecosystems altered and destroyed, and uncommon habitats threatened. Sedimentation appears the single-most important and enduring contributor to ecological degradation in shallow waters of this northern harbour, with time lags between stressor-onset and realisation of impact (decades to centuries) that only now are becoming clear. Outstanding issues concern establishing the extent of relationship between levels of terrigenous sedimentation and cockles seldom attaining their previous maximum sizes, and origins of the possibly new, widespread phenomenon of living cockles accumulating and dying atop beach surfaces.
DOI: 10.6084/m9.figshare.12003822.v2
title: Reviewing the far-reaching ecological impacts of human-induced terrigenous sedimentation on shallow marine ecosystems in a northern-New Zealand embayment

description: Human settlement in Bay of Islands, New Zealand, beginning ∼1300 AD, wrought immense, conspicuous and enduring change to local shallow-water marine ecologies, this review addressing those transformations attributable to increased rates of anthropogenically induced, land-derived sedimentation. Elevated silt inflow, particularly after the late-1800s, in course led to ∼130% expansion in mangrove (<i>Avicennia marina</i>) cover, with concomitant loss of saltmarsh, uppershore coarse-shell beaches/cheniers, and (probably) intertidal seagrass (<i>Zostera muelleri</i>). Sedimentation also led to widespread loss of estuarine shellfish habitat, and, although not necessarily categorically causal, seems, at the same time to have contributed to such degradation among cockle (<i>Austrovenus stutchburyi</i>) populations that few individuals attain their potential size. Most changes, many seemingly irreversible, can be described as ecologically catastrophic, with ecosystems altered and destroyed, and uncommon habitats threatened. Sedimentation appears the single-most important and enduring contributor to ecological degradation in shallow waters of this northern harbour, with time lags between stressor-onset and realisation of impact (decades to centuries) that only now are becoming clear. Outstanding issues concern establishing the extent of relationship between levels of terrigenous sedimentation and cockles seldom attaining their previous maximum sizes, and origins of the possibly new, widespread phenomenon of living cockles accumulating and dying atop beach surfaces.
DOI: 10.6084/m9.figshare.12003822.v1
title: Reviewing the far-reaching ecological impacts of human-induced terrigenous sedimentation on shallow marine ecosystems in a northern-New Zealand embayment

description: Human settlement in Bay of Islands, New Zealand, beginning ∼1300 AD, wrought immense, conspicuous and enduring change to local shallow-water marine ecologies, this review addressing those transformations attributable to increased rates of anthropogenically induced, land-derived sedimentation. Elevated silt inflow, particularly after the late-1800s, in course led to ∼130% expansion in mangrove (<i>Avicennia marina</i>) cover, with concomitant loss of saltmarsh, uppershore coarse-shell beaches/cheniers, and (probably) intertidal seagrass (<i>Zostera muelleri</i>). Sedimentation also led to widespread loss of estuarine shellfish habitat, and, although not necessarily categorically causal, seems, at the same time to have contributed to such degradation among cockle (<i>Austrovenus stutchburyi</i>) populations that few individuals attain their potential size. Most changes, many seemingly irreversible, can be described as ecologically catastrophic, with ecosystems altered and destroyed, and uncommon habitats threatened. Sedimentation appears the single-most important and enduring contributor to ecological degradation in shallow waters of this northern harbour, with time lags between stressor-onset and realisation of impact (decades to centuries) that only now are becoming clear. Outstanding issues concern establishing the extent of relationship between levels of terrigenous sedimentation and cockles seldom attaining their previous maximum sizes, and origins of the possibly new, widespread phenomenon of living cockles accumulating and dying atop beach surfaces.
DOI: 10.6084/m9.figshare.12003795
title: WCMC

description: This files is the codes used to compose the results of the article published in the wireless communication and mobile computing<br>
DOI: 10.6084/m9.figshare.12003744
title: Impact of phytoplasm (<i>Candidatus</i> Phytoplasma australiense) on cabbage trees (<i>Cordyline australis</i> (Forst.f.) Endl.) throughout New Zealand, 1990–2014

description: Worldwide, tree species sometimes fall victim to epidemics of microbial pathogens, usually spread by sap-sucking insects. One such example is the recent devastation of cabbage trees (<i>Cordyline australis</i>) in New Zealand by a damaging phytoplasm (‘<i>Candidatus</i> Phytoplasma australiense’). Cabbage trees are among New Zealand’s most emblematic plant species, playing an iconic role in many landscapes. They were first reported dying in Northland in 1987, of a condition given the name ‘sudden decline’. The small hemipteran <i>Zeoliarus oppositus</i> is now known to be the main vector spreading the disease. Here I document the establishment and spread of the disease throughout the North Island and upper South Island of New Zealand over a 24-year period. In this study, some 31,000 living and dead cabbage trees were counted on roadsides in the North Island and northern South Island, in 1990, 1995, 2000, 2006, and between 2012 and 2014. Infected trees lost their leaves, leaving dead white trunks standing until they rotted away over two or three years. Large, mature trees were particularly susceptible to infection and were all but wiped out in many parts of the North Island districts of Northland, Bay of Plenty, the Waikato, King Country, and Hawkes Bay, transforming some landscapes. The South Island was almost free of the disease, with the exception of Marlborough and Nelson<i>.</i> The percentage of dead trees peaked between 1990 and 2006 but declined by 2012–2014 as susceptible large trees became rarer. Differences in the insect vector’s regional abundance are thought to account for the national pattern of deaths.
DOI: 10.6084/m9.figshare.12003744.v1
title: Impact of phytoplasm (<i>Candidatus</i> Phytoplasma australiense) on cabbage trees (<i>Cordyline australis</i> (Forst.f.) Endl.) throughout New Zealand, 1990–2014

description: Worldwide, tree species sometimes fall victim to epidemics of microbial pathogens, usually spread by sap-sucking insects. One such example is the recent devastation of cabbage trees (<i>Cordyline australis</i>) in New Zealand by a damaging phytoplasm (‘<i>Candidatus</i> Phytoplasma australiense’). Cabbage trees are among New Zealand’s most emblematic plant species, playing an iconic role in many landscapes. They were first reported dying in Northland in 1987, of a condition given the name ‘sudden decline’. The small hemipteran <i>Zeoliarus oppositus</i> is now known to be the main vector spreading the disease. Here I document the establishment and spread of the disease throughout the North Island and upper South Island of New Zealand over a 24-year period. In this study, some 31,000 living and dead cabbage trees were counted on roadsides in the North Island and northern South Island, in 1990, 1995, 2000, 2006, and between 2012 and 2014. Infected trees lost their leaves, leaving dead white trunks standing until they rotted away over two or three years. Large, mature trees were particularly susceptible to infection and were all but wiped out in many parts of the North Island districts of Northland, Bay of Plenty, the Waikato, King Country, and Hawkes Bay, transforming some landscapes. The South Island was almost free of the disease, with the exception of Marlborough and Nelson<i>.</i> The percentage of dead trees peaked between 1990 and 2006 but declined by 2012–2014 as susceptible large trees became rarer. Differences in the insect vector’s regional abundance are thought to account for the national pattern of deaths.
DOI: 10.6084/m9.figshare.12003699
title: ACA Google Trends Data by Time

description: Google Trends data from 2009 to 2017 were captured for the terms: Obamacare, Affordable Care Act, ACA, and health insurance.
DOI: 10.6084/m9.figshare.12003513
title: GROD US and validation data

description: Validation and US data from the Global River Obstruction Database (GROD).
DOI: 10.6084/m9.figshare.12003513.v1
title: GROD US and validation data

description: Validation and US data from the Global River Obstruction Database (GROD).
DOI: 10.6084/m9.figshare.12003342
title: Supplementary_files.zip

description: p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 14.0px 'Times New Roman'; color: #00000a; -webkit-text-stroke: #00000a} span.s1 {font-kerning: none} p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px 'Times New Roman'; color: #00000a; -webkit-text-stroke: #00000a; background-color: #ffff00} p.p2 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px 'Times New Roman'; color: #00000a; -webkit-text-stroke: #00000a; background-color: #ffff00; min-height: 15.0px} p.p3 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px 'Times New Roman'; color: #00000a; -webkit-text-stroke: #00000a} span.s1 {font-kerning: none} span.s2 {font-kerning: none; background-color: #ffff00} <b>Data_Supp1.</b> Summary of the number of genes retrieved from each species and for each gene set, along with the number of pseudogenes and the number of LoF mutations. <br> <b>Data_Supp2.</b> Sequences predicted with exonerate and ID of sequences retrieved from Ensembl. <br> <b>Data_Supp3.</b> Results obtained with different methods for dating relaxed selection on eye genes in <i>Lucifuga dentata</i>. <br> Description of Supplementary files content: Divergence_values: Pairwise nucleotidic distances between species for each gene set. Lucifuga_Supplementary_files_Genome: Original GFF3 file with functional annotations and scaffolds smaller than 200 bp not uploaded to NCBI. MutPred2_Results: Raw output of MutPred2. Parsed results files to be used with the script provided in github (MutPred2_Script.R) are also provided. Phylogenies: Gene phylogenies computed with iQTree and displayed with iTOL. The model used for each phylogeny can be found on the “Models” folder. Concatenated_Alignments: Concatenated alignments for vision, circadian and pigmentation genes.<br>
DOI: 10.6084/m9.figshare.12003342.v1
title: Supplementary_files.zip

description: p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 14.0px 'Times New Roman'; color: #00000a; -webkit-text-stroke: #00000a} span.s1 {font-kerning: none} p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px 'Times New Roman'; color: #00000a; -webkit-text-stroke: #00000a; background-color: #ffff00} p.p2 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px 'Times New Roman'; color: #00000a; -webkit-text-stroke: #00000a; background-color: #ffff00; min-height: 15.0px} p.p3 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px 'Times New Roman'; color: #00000a; -webkit-text-stroke: #00000a} span.s1 {font-kerning: none} span.s2 {font-kerning: none; background-color: #ffff00} <b>Data_Supp1.</b> Summary of the number of genes retrieved from each species and for each gene set, along with the number of pseudogenes and the number of LoF mutations. <br> <b>Data_Supp2.</b> Sequences predicted with exonerate and ID of sequences retrieved from Ensembl. <br> <b>Data_Supp3.</b> Results obtained with different methods for dating relaxed selection on eye genes in <i>Lucifuga dentata</i>. <br> Description of Supplementary files content: Divergence_values: Pairwise nucleotidic distances between species for each gene set. Lucifuga_Supplementary_files_Genome: Original GFF3 file with functional annotations and scaffolds smaller than 200 bp not uploaded to NCBI. MutPred2_Results: Raw output of MutPred2. Parsed results files to be used with the script provided in github (MutPred2_Script.R) are also provided. Phylogenies: Gene phylogenies computed with iQTree and displayed with iTOL. The model used for each phylogeny can be found on the “Models” folder. Concatenated_Alignments: Concatenated alignments for vision, circadian and pigmentation genes.<br>
DOI: 10.6084/m9.figshare.12003315
title: JGR-NCP-2020

description: Here are the figure-data and model supporting the JGR paper titled "Effects of groundwater pumping on ground surface temperature: A regional modeling study in the North China Plain".
DOI: 10.6084/m9.figshare.12003306
title: CA29.final.snps.vcf

description: SNPs from the male parental strain (CA29) obtained through GATK's best practices guideline.
DOI: 10.25592/uhhfdm.1456
title: PhonBLA Longitudinalstudie Hamburg Media

description: Additional data from the PhonBLA Longitudinalstudie Hamburg project.
DOI: 10.6084/m9.figshare.12003210
title: Supplemental Table 4

description: Cell specific analysis
DOI: 10.25592/uhhfdm.1455
title: PhonBLA Longitudinalstudie Hamburg Media

description: Additional data from the PhonBLA Longitudinalstudie Hamburg project.
DOI: 10.6084/m9.figshare.12003210.v1
title: Supplemental Table 4

description: Cell specific analysis
DOI: 10.15468/wxvqjy
title: A new large and colourful species of the genus Doto (Nudibranchia: Dotidae) from South Africa

description: This dataset contains the digitized treatments in Plazi based on the original journal article Pola, Marta, Gosliner, Terrence M. (2015): A new large and colourful species of the genus Doto (Nudibranchia: Dotidae) from South Africa. Journal of Natural History 49 (41): 2465-2481, DOI: 10.1080/00222933.2015.1034211
DOI: 10.6084/m9.figshare.12003087
title: Integrating Evidence-Based Medicine Skills into a Medical School Curriculum: A Quantitative Outcomes Assessment - Data

description: These are grades given to medical students in Y1-Y3 on an EBM assignment in their Internal Medicine clerkship. See corresponding article for more information.
DOI: 10.6084/m9.figshare.12003087.v1
title: Integrating Evidence-Based Medicine Skills into a Medical School Curriculum: A Quantitative Outcomes Assessment - Data

description: These are grades given to medical students in Y1-Y3 on an EBM assignment in their Internal Medicine clerkship. See corresponding article for more information.
DOI: 10.15468/ps657d
title: A new species of Schizopera (Copepoda: Harpacticoida) from Japan, its phylogeny based on the mtCOI gene and comments on the genus Schizoperopsis

description: This dataset contains the digitized treatments in Plazi based on the original journal article Karanovic, Tomislav, Kim, Kichoon, Grygier, Mark J. (2015): A new species of Schizopera (Copepoda: Harpacticoida) from Japan, its phylogeny based on the mtCOI gene and comments on the genus Schizoperopsis. Journal of Natural History 49 (41): 2493-2526, DOI: 10.1080/00222933.2015.1028112
DOI: 10.6084/m9.figshare.12001371
title: Classification of top Twitter accounts discussing about FPU Dual

description: Classification of top Twitter accounts discussing about FPU Dual.
DOI: 10.6084/m9.figshare.12001371.v1
title: Classification of top Twitter accounts discussing about FPU Dual

description: Classification of top Twitter accounts discussing about FPU Dual.
DOI: 10.6084/m9.figshare.12001239
title: new_marco_DB_1106.unique.fasta

description: The database includes a fasta file with 1165 representative sequences of <i>5S intergenic spacer</i> , the corresponding taxonomy file (in Mothur compatible format) and an Excel file providing correspondence between clone codes, genbank accessions and geographic provenience.
DOI: 10.6084/m9.figshare.12001248
title: Long-term repeatability in social behaviours suggests stable social phenotypes in wild chimpanzees

description: Datasets for social phenotype study of wilf chimpanzees<br>
DOI: 10.6084/m9.figshare.12001239.v1
title: new_marco_DB_1106.unique.fasta

description: The database includes a fasta file with 1165 representative sequences of <i>5S intergenic spacer</i> , the corresponding taxonomy file (in Mothur compatible format) and an Excel file providing correspondence between clone codes, genbank accessions and geographic provenience.
DOI: 10.6084/m9.figshare.12000753
title: Supplementary Material for: Poststroke Cognitive Impairment in Model-Based Economic Evaluation: A Systematic Review

description: <b><i>Introduction:</i></b> Cognitive impairment (CI) is a frequent consequence of stroke and is associated with increased costs and reduced quality of life. However, its inclusion in model-based economic evaluation for stroke is limited. <b><i>Objective:</i></b> To identify, review, and critically appraise current models of stroke for use in economic evaluation, and to identify applicability to modeling poststroke CI. <b><i>Methods:</i></b> PubMed, EMBASE, and the NHS Economic Evaluations Database (NHS EED) were systematically searched for papers published from January 2008 to August 2018. Studies that described the development or design of a model of stroke progression intended for use in economic evaluation were included. Abstracts were screened, followed by full text review of potentially relevant articles. Models that included CI were retained for data extraction, and among the remainder, models that included both stroke recurrence and disability were also retained. Relevance and potential for adaptation for modeling CI were assessed using a standard questionnaire. <b><i>Results:</i></b> Forty modeling studies were identified and categorized into 4 groups: Markov disability/recurrence (k = 29); CI (k = 2); discrete event simulation (k = 4), and other (k = 5). Only 2 modeling studies included CI as an outcome, and both focused on narrow populations at risk of intracranial aneurysm. None of the models allowed for disease progression in the absence of a stroke recurrence. None of the included studies carried out any sensitivity analysis in relation to model design or structure. <b><i>Conclusions:</i></b> Current stroke models used in economic evaluation are not adequate to model poststroke CI or dementia, and will require adaptation to be used for this purpose.
DOI: 10.25399/unisadata.12000672
title: EJIDSC Data set

description: Investigation on ICT Infrastructures. EJISDC Data sets.
DOI: 10.25399/unisadata.12000672.v1
title: EJIDSC Data set

description: Investigation on ICT Infrastructures. EJISDC Data sets.
DOI: 10.6084/m9.figshare.12000666
title: Decoy Receptor 3 as a Biomarker for Diagnosis of Bacterial Sepsis

description: <b>Subjects and Methods</b>: The present study included 30 patients and 15 healthy controls, systemic inflammatory response syndrome (SIRS) group. Serum DcR3 level was measured by quantitative<b> </b>enzyme-linked immunosorbent assay (ELISA), sepsis was identified by positive blood culture results, SIRS group were identified by negative blood culture or negative 16S ribosomal DNA (rDNA) polymerase chain reaction (PCR) results. Receiver operating curve (ROC) analysis was performed for DcR3 and C reactive protein (CRP) alone and in combination. <b>Results</b>: The serum DcR3 level was significantly higher in sepsis patients than SIRS patients and healthy controls (5.21 ± 2.28 ng/mL, 1.96 ± 0.90 ng/mL, and 0.95 ± 0.79 ng/mL, respectively, <i>p</i> &lt; 0.001). The ROC area under the curve (AUC) of DcR3 for sepsis vs. SIRS was 0.920 at a cutoff of 2.4 ng/mL, with a sensitivity and specificity of 93.33% and 86.67%, respectively. The AUC of combined positive DcR3 and positive CRP for sepsis vs. SIRS was 0.967 with a sensitivity and specificity of 93.33% and 100%, respectively. <b>Conclusion</b>: Our study showed that DcR3, alone or in combination with other biomarkers, is promising for distinguishing sepsis from SIRS patients.