cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.12603945
title: 1271 draft assemblies

description: All 1,271 complete Klebsiella genomes that were available in GenBank as of June 2023 were downloaded, encompassing 1,273 chromosome sequences and 4,796 plasmid sequences. Furthermore, for each complete genome, we simulated reads using wgsim with 55x coverage and no error rate (“-N 1000000 -e 0 -1 150 -2 150”). SPAdes was used to perform de novo assembly of the simulated reads, and the plasmid- or chromosome-associated contigs were identified by aligning all contigs back to the corresponding complete genomes using BLASTn, with ≥98.5% identity and ≥80% coverage. A total of 1674 contigs (~1.3 per genome) that failed to align, or aligned to both chromosome and plasmids were excluded. Furthermore, contigs with a length smaller than 1000 bp were also removed because many of the prediction tools were not able to handle them. The final simulated dataset consists of 662,128 contigs from chromosomes and 64,981 contigs from plasmids.
DOI: 10.5281/zenodo.12633486
title: 1271 draft assemblies

description: All 1,271 complete Klebsiella genomes that were available in GenBank as of June 2023 were downloaded, encompassing 1,273 chromosome sequences and 4,796 plasmid sequences. Furthermore, for each complete genome, we simulated reads using wgsim with 55x coverage and no error rate (“-N 1000000 -e 0 -1 150 -2 150”). SPAdes was used to perform de novo assembly of the simulated reads, and the plasmid- or chromosome-associated contigs were identified by aligning all contigs back to the corresponding complete genomes using BLASTn, with ≥98.5% identity and ≥80% coverage. A total of 1674 contigs (~1.3 per genome) that failed to align, or aligned to both chromosome and plasmids were excluded. Furthermore, contigs with a length smaller than 1000 bp were also removed because many of the prediction tools were not able to handle them. The final simulated dataset consists of 662,128 contigs from chromosomes and 64,981 contigs from plasmids.
DOI: 10.15468/dl.9dsd6u
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.19_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Papaver rhoeas L., Begonia grandis Dryand.)"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015089-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3y6rzu
title: Occurrence Download

description: A dataset containing 299032 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plantago media L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 299032 records from 1460 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015060-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.23g8sg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thymus vavilovii Klokov"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015073-230810091245214/datasets/export for details.
DOI: 10.15468/dl.e6b6yv
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oenothera engelmannii (Wooton & Standl.) Munz"
 ]
}

 The dataset includes 144 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027961-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.456wm2
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhodophiala mendocina (Phil.) Ravenna"
 ]
}

 The dataset's 1 records were derived from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106295-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mdryve
title: Occurrence Download

description: A dataset containing 13848 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Limnichidae"
 ]
}

 The dataset includes 13848 records from 200 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008449-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0h3axp
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-92.16809 -12.45450,-35.89400 -12.45450,-35.89400 10.04550,-92.16809 10.04550,-92.16809 -12.45450))",
 "HasCoordinate is true",
 "TaxonKey is Colletotrichum acutatum J.H.Simmonds",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050018-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6sv53s
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cophyla occultans (Glaw & Vences, 1992)"
 ]
}

 The dataset includes 42 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0301486-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gu8tcw
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anniellidae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 13 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015084-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.102579
title: KOM OMBO_nb_1975_02529

description: Référence : nb_1975_02529<br />Site : Kôm Ombo<br />Type : photographie<br />
DOI: 10.15468/dl.lhfbej
title: Occurrence Download

description: A dataset containing 3487 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Archontophoenix cunninghamiana (H.Wendl.) H.Wendl. & Drude",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3487 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041696-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v5mnzw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thylodrias contractus Motschulsky, 1839",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0312408-210914110416597/datasets/export for details.
DOI: 10.15468/dl.rqqs4b
title: Occurrence Download

description: A dataset containing 1071 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "Country is one of (Spain, Portugal, Andorra)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Campanula trachelium L."
 ]
}

 The dataset includes 1071 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015097-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wz76lu
title: Occurrence Download

description: A dataset containing 808 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Census of living organisms for infectious, parasitics and virals diseases recorded in the Departemental University Hospital Center of Ouémé-Plateau, South-Benin. Database 2"
 ]
}

 The dataset includes 808 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021912-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.78pkzc
title: Occurrence Download

description: A dataset containing 23237 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diodon holocanthus Linnaeus, 1758"
 ]
}

 The dataset includes 23237 records from 219 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0234205-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zp5bnr
title: Occurrence Download

description: A dataset listing the 10477 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is EOD – eBird Observation Dataset"
 ]
}

 The dataset's 10477 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015101-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.102578
title: KOM OMBO_nb_1975_02528

description: Référence : nb_1975_02528<br />Site : Kôm Ombo<br />Type : photographie<br />
DOI: 10.15468/dl.eznop6
title: Occurrence Download

description: A dataset containing 588 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Agroforestry plant species found in protected areas and riparian lands in Sudano-guinean and Sudanian agroecological zones. Data mobilized in the framework of BID National project BID-AF2015-0065-NAC and funded by EU"
 ]
}

 The dataset includes 588 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021894-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dhcsh8
title: Occurrence Download

description: A dataset containing 16185 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Calendula arvensis L.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 16185 records from 172 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0234213-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.102577
title: KOM OMBO_nb_1975_02527

description: Référence : nb_1975_02527<br />Site : Kôm Ombo<br />Type : photographie<br />
DOI: 10.15468/dl.5e2hw2
title: Occurrence Download

description: A dataset containing 11412 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Opuntia humifusa (Raf.) Raf."
 ]
}

 The dataset includes 11412 records from 226 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033257-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.102576
title: KOM OMBO_nb_1975_02526

description: Référence : nb_1975_02526<br />Site : Kôm Ombo<br />Type : photographie<br />
DOI: 10.15468/dl.7sstq8
title: Occurrence Download

description: A dataset containing 317 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Padaeus trivittatus Stål, 1872"
 ]
}

 The dataset includes 317 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021928-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cj9837
title: Occurrence Download

description: A dataset containing 51726 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Calendula officinalis L.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 51726 records from 182 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0234214-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.102575
title: KOM OMBO_nb_1975_02525

description: Référence : nb_1975_02525<br />Site : Kôm Ombo<br />Type : photographie<br />
DOI: 10.15468/dl.udzqqz
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "TaxonKey is Haemaphysalis punctata Canestrini & Fanzago, 1878"
 ]
}

 The dataset includes 10 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106299-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cfmp8x
title: Occurrence Download

description: A dataset containing 2402 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Census of plant species in Bonou forest reserve (Southern Benin)"
 ]
}

 The dataset includes 2402 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021919-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wdqdsb
title: Occurrence Download

description: A dataset containing 454 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gigantura indica Brauer, 1901"
 ]
}

 The dataset includes 454 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057616-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.102574
title: KOM OMBO_nb_1975_02524

description: Référence : nb_1975_02524<br />Site : Kôm Ombo<br />Type : photographie<br />
DOI: 10.34816/ifao.archives.102573
title: KOM OMBO_nb_1975_02523

description: Référence : nb_1975_02523<br />Site : Kôm Ombo<br />Type : photographie<br />
DOI: 10.15468/dl.2uwmox
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arytera microphylla (Benth.) Radlk.",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 37 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041700-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.enhmer
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "TaxonKey is Haemaphysalis concinna Koch, 1844"
 ]
}

 The dataset includes 37 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106294-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.102572
title: KOM OMBO_nb_1975_02522

description: Référence : nb_1975_02522<br />Site : Kôm Ombo<br />Type : photographie<br />
DOI: 10.15468/dl.qszuqf
title: Occurrence Download

description: A dataset containing 3303 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Calathus cinctus Motschulsky, 1850)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 3303 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0234201-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.102571
title: KOM OMBO_nb_1975_02521

description: Référence : nb_1975_02521<br />Site : Kôm Ombo<br />Type : photographie<br />
DOI: 10.15468/dl.2w5yvr
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "TaxonKey is Argas vespertilionis Latreille, 1796"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106287-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.brme1d
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-99.95398 21.76842,-98.21158 21.76842,-98.21158 23.83462,-99.95398 23.83462,-99.95398 21.76842))",
 "TaxonKey is Eleutherodactylus dennisi (Lynch, 1970)"
 ]
}

 The dataset includes 13 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021885-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.102570
title: KOM OMBO_nb_1975_02520

description: Référence : nb_1975_02520<br />Site : Kôm Ombo<br />Type : photographie<br />
DOI: 10.15468/dl.af6595
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arthroleptis zimmeri (Ahl, 1925)"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0301487-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zjc3bk
title: Occurrence Download

description: A dataset containing 334616 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Pipistrellus pipistrellus (Schreber, 1774)"
 ]
}

 The dataset includes 334616 records from 627 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106284-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qpohpw
title: Occurrence Download

description: A dataset containing 261 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Projet 3B Biodiversité Biomasse Bordeaux-Inventaire et suivi Faune"
 ]
}

 The dataset includes 261 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025932-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.