cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/4bzwh68gb3
title: Sphingolipid paracrine signaling impairs keratinocyte adhesion to promote melanoma invasion

description: Unprocessed western blots of Figure 5D, Figure 5F, Figure S5C and Figure S5E. (Noujarède, Carrié et al.)
DOI: 10.6084/m9.figshare.24288274.v1
title: <i>Sargassum horneri</i> Assembled Genome

description: The genomic sequence data generated in the present study offers crucial information for advancing Sargassum horneri research, including functional genomic analysis. Furthermore, the draft genome can serve as a genomic reference for exploring functional products and conducting other genome mining applications.
DOI: 10.6084/m9.figshare.25773432.v1
title: Using fibre-optic sensing for non-invasive, continuous dendrometry of mature tree trunks

description: Dendrometry is the main non-invasive macroscopic technique commonly used in plant physiology and ecophysysiology studies. Over the years several types of dendrometric techniques have been developed, each with their respective strengths and drawbacks. Automatic and continuous monitoring solutions are being developed, but are still limited, particularly for non-invasive monitoring of large-diameter trunks. In this study, we propose a new type of automated dendrometer based on distributed fibre-optic sensing that continuously measures the change in stem circumference, is non-invasive, and has no upper limit on the trunk diameter on which it can be installed. We perform a three-month validation experiment during which we deploy a fibre-optic cable at three localities around the trunks of two specimens of Brachychiton. We verify the accuracy of this new method through comparison against a conventional point-dendrometer, and we observe a consistent time lag between the various measurement locations that varies with the meteorological conditions. Finally, we discuss the feasibility of the fibre-based dendrometer in the context of existing dendrometric techniques and practical experimental considerations.This repository contains the data and scripts to reproduce the results from this study. Please refer to README.md to get started.
DOI: 10.6084/m9.figshare.28945925.v1
title: Cramer-Rao Lower Bound for Coincidence Resolving Time of Scintillator Detectors

description: Python notebook which determines the Cramer-Rao Lower Bound on the Coincidence Resolving Time of a scintillation detector.Before running, install dependencies with:pip install numpy scipy matplotlib
DOI: 10.17632/w5ttrcfxz4
title: Data for: Experimental and numerical study on heat transfer and flow characteristics in shell side of helically coiled tube heat exchanger based on multi-objective optimization

description: experimental data CFD_post formula
DOI: 10.6084/m9.figshare.14616852.v1
title: Supplementary Material for: Stroke and Heart Attack Symptom Recognition in Older US Adults by Cognitive Impairment Status

description: <b><i>Introduction:</i></b> Cognitive impairment may make stroke and heart attack symptom recognition difficult, potentially resulting in treatment delays for those with these cardiovascular diseases (CVDs). Despite cognitive impairment affecting large numbers of older US adults who are also at increased risk of stroke and heart attack, little is known about stroke and heart attack symptom recognition in this population. As a result, this study sought to determine the impact of cognitive impairment on stroke and heart attack symptom recognition among older US adults. <b><i>Methods:</i></b> Using the 2014 and 2017 National Health Interview Surveys, we compared stroke and heart attack symptom recognition levels in US adults aged ≥65 years with cognitive impairment and those without cognitive impairment. Estimates of stroke and heart attack symptom recognition adjusted for CVD-related factors were assessed by cognitive impairment status. We also conducted analyses stratified by living arrangement and stroke and heart attack history for individuals with and without cognitive impairment. <b><i>Results:</i></b> US adults aged ≥65 years with cognitive impairment were observed to be 3.0–6.7% and 1.6–4.9%, respectively, less likely to recognize an individual stroke and heart attack symptom than similarly aged individuals without cognitive impairment. Recognition of all 5 stroke/heart attack symptoms was also lower among those with cognitive impairment, with this group being 9.7% less likely to recognize all stroke symptoms and 6.7% less likely to recognize all 5 heart attack symptoms compared to people without cognitive impairment. Following adjustment, individuals with cognitive impairment continued to have slightly lower recognition of certain individual stroke and heart attack symptoms as well as of all 5 symptoms of these conditions (stroke OR: 0.70 [95% CI: 0.58–0.85]; heart attack OR: 0.88 [95% CI: 0.75, 1.03]) than those without cognitive impairment. For individuals with cognitive impairment, living with others was linked with slightly better recognition of all individual stroke symptoms and heart attack history with better recognition of all individual heart attack symptoms. <b><i>Conclusions:</i></b> Additional work is needed to address the challenge of improving recognition levels for specific stroke and heart attack symptoms in older US adults with cognitive impairment and especially for members of this group who live alone.
DOI: 10.6084/m9.figshare.25187723.v1
title: Table 3. Final selection of articles

description: Table 3. Final selection of articles
DOI: 10.6084/m9.figshare.27186771.v1
title: 数据set.zip

description: 煤炭开采数据
DOI: 10.6084/m9.figshare.10252715.v1
title: Unique and redundant roles of SOX2 and SOX17 in regulating the germ cell tumor fate

description: Embryonal carcinomas (ECs) and seminomas are testicular germ cell tumors. ECs display expression of SOX2, while seminomas display expression of SOX17. In somatic differentiation, SOX17 drives endodermal cell fate. However, seminomas lack expression of endoderm markers, but show features of pluripotency. Here, we use chromatin immunoprecipitation sequencing to report and compare the binding pattern of SOX17 in seminoma-like TCam-2 cells to SOX17 in somatic cells and SOX2 in EC-like 2102EP cells. In seminoma-like cells, SOX17 was detected at canonical (SOX2/OCT4), compressed (SOX17/OCT4) and noncomposite SOXmotifs. SOX17 regulates TFAP2C, PRDM1 and PRDM14, therebymaintaining latent pluripotency and suppressing somatic differentiation. In contrast, in somatic cells canonicalmotifs are rarely bound by SOX17. In sum, only 12%of SOX17-binding sites overlap in seminoma-like and somatic cells. This illustrates that binding site choice is highly dynamic and cell type specific. Deletion of SOX17 in seminoma-like cells resulted in loss of pluripotency,marked by a reduction of OCT4 protein level and loss of alkaline phosphatase activity. Furthermore, we found that in EC-like cells SOX2 regulates pluripotency-associated genes,most likely by partneringwith OCT4. In conclusion, SOX17 (in seminomas) functionally replaces SOX2 (in ECs) tomaintain expression of the pluripotency cluster.
DOI: 10.6084/m9.figshare.9964241.v1
title: BioCyc Tier3 Diamond index and mapping files

description: Diamond aligner (https://github.com/bbuchfink/diamond) index for Biocyc Tier3 database (V23.0) as well as files mapping aligned objects to pathways/enzymes/transporters/complexes.
DOI: 10.6084/m9.figshare.14695176.v3
title: Web of Science categories (WC, SC, main categories) and ESI disciplines mapping

description: Mapping of Research Area (SC), Web of Science Category (WC), five main categories, and ESI disciplines.<br>
DOI: 10.17632/hj3vvx5946
title: Vehicle images dataset for make and model recognition

description: The dataset consists of 3847 images of different vehicles having different makes and model. The dataset has 48 different classes of vehicle models which are annotated in 48 different folders, each folder is named with its respective vehicle make and model name.
DOI: 10.6084/m9.figshare.12981977.v2
title: Long-term (1982-2018) global gross primary production dataset based on NIRv

description: This dataset provides global monthly gross primary production (GPP) based on satellite NIRv (near-infrared reflectance) during 1982-2018 with a spatial resolution of 0.05 degree. Data format: netcdf. (Every .zip file contains all monthly GPP of a year) Spatial extent: 90S-90N 180W-180E Fill value: -9999 Scale factor: 0.001 Unit: gC m<sup>-2</sup> d<sup>-1</sup> Any questions about the GPP dataset can be corresponded to wangsonghan2@gmail.com (Songhan Wang). Reference: Songhan Wang, Yongguang Zhang, Weimin Ju et al., Tracking the seasonal and inter-annual variations of global gross primary production during last four decades using satellite near-infrared reflectance data (2020), Science of The Total Environment (In Revision).<br>
DOI: 10.6084/m9.figshare.22691047.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.8326664.v1
title: Analysis of microbiota in cultures of the green microalga <i>Tetraselmis suecica</i>

description: Bacteria associated with microalgae strongly affect algal biomass and derived product yield and quality. Nevertheless, only a few studies have addressed the detailed phylogenetic characterization of bacterial communities associated with microalgae. In this study, the phycospheric bacterial communities associated with different <i>Tetraselmis suecica</i> F&M-M33 cultures, a green marine microalga with several industrial applications, were analysed using a metagenomic approach. The <i>T. suecica</i> F&M-M33 cultures used originated from the same ancestral microalgal non-axenic culture but were physically and geographically separated for years and maintained under different growing conditions. Despite the different history of the cultures, a ‘core’ bacterial community was identified, accounting for 70% of the total bacterial community and formed by at least 13 families. Among the ‘core’ operational taxonomic units (OTUs), 24 different genera were identified. Nevertheless, there was a high variability in the relative proportions of the taxa forming the ‘core’ community, indicating that the growing conditions and/or external contamination influence the relative abundance of these microorganisms. Our study allowed the identification of persistent taxa that may be used to deepen the knowledge of the complex relationship between <i>T. suecica</i> and its associated bacteria.
DOI: 10.17632/4xdgbbf2tx
title: Tree mortality and carbon stocks following 2019-20 Australian fires

description: Observations of tree-level canopy response to fire, and plot-level above-ground biomass. A description of the data can be found in the associate manuscript "The carbon cost of the 2019-20 Australian fires varies with fire severity and forest type" in Global Ecology and Biogeography.
DOI: 10.6084/m9.figshare.19657323.v2
title: Questionnaires

description: Questinnaires acessing empathy. One done before the experimental proceedure, named "Questionnaire_IA" and one after named "Questionnaire_IB"
DOI: 10.6084/m9.figshare.26914816.v3
title: Public data files from legacy Replicationdomain.com

description: This is the entry site to the collection of public data files from legacy Replicationdomain.comThe data consists of4DN data setsHuman data setsMouse data setsAs FigShare allows only up to 100 files/entry, Human and Mouse data sets are divided into multiple entries according to the sample/assay types. To find the BigWig files you need, please refer to the Word file "Data file location".<br>
DOI: 10.6084/m9.figshare.28211774.v1
title: Data_Artificial reef

description: The data of artificial reefs in Sishili Bay (SB) and the Changdao Archipelago (CA), Yantai, China.
DOI: 10.6084/m9.figshare.5127880.v1
title: Supplementary Material for: Involvement of the L-Type Amino Acid Transporter Lat2 in the Transport of 3,3′-Diiodothyronine across the Plasma Membrane

description: Thyroid hormones are transported across cell membranes by transmembrane transporter proteins, for example by members of the monocarboxylate transporter (MCT) and the L-type amino acid transporter (LAT) families. LATs consist of a light chain (e.g. LAT2) and a heavy chain (CD98), which is essential for their cell surface expression and functionality. The specificity of Lat2 for thyroid hormones and their metabolites and its role in their transport was not fully clear. This fact motivated us to establish a cell system to elucidate the uptake of thyroid hormones and their metabolites by mouse Lat2. The coinjection of cRNA coding for Lat2 and CD98 into <i>Xenopus laevis</i> oocytes resulted in a markedly increased level of 3,3′-diiodo-L-thyronine (3,3′-T<sub>2</sub>) and to some extent also enhanced T<sub>3</sub> transport. To gain insight into properties of thyroid hormones and their metabolites transported by Lat2, we inhibited 3,3′-T<sub>2</sub> uptake by various iodothyronine derivatives. T<sub>1</sub> and T<sub>2</sub> derivatives as well as 2-aminobicyclo-[2,2,1]-heptane-2-carboxylic acid strongly competed with 3,3′-T<sub>2</sub> uptake. In addition, we performed T<sub>2</sub> uptake measurements with the thyroid hormone-specific transporter MCT8. For both Lat2 and MCT8, K<sub>m</sub> values in a low micromolar range were calculated. We demonstrated that oocytes are a suitable system for thyroid hormone transport studies mediated by Lat2. Our data indicates that Lat2 compared to other thyroid hormone transporters prefers 3,3′-T<sub>2</sub> as the substrate. Thus, Lat2 might contribute to the availability of thyroid hormone by importing and/or exporting 3,3′-T<sub>2</sub>, which is generated either by T<sub>3</sub> inactivation or by rapid deiodinase 1-mediated rT<sub>3</sub> degradation.
DOI: 10.17632/mgmdkzv2dg
title: Compassion Fatigue, Compassion Satisfaction and Spiritual Well-Being

description: The study pertaining to this dataset aimed to assess the prevalence of Compassion Fatigue (CF) and Compassion Satisfaction (CS) in early career doctors and to examine various predictors of CF and CS, particularly the role of Spiritual Well-Being in their development. The dataset was created using the Professional Quality of Life Scale (ProQol v5) to assess compassion fatigue and compassion satisfaction, and the Spiritual Well-Being Scale (SWBS). Various sociodemographic details and work environment characteristics are included.
DOI: 10.17632/wvbbdjp3jr
title: Eu(III) sorption onto various montmorillonites: Experiments and modeling

description: Here is Eu(III) sorption data onto studied clays
DOI: 10.6084/m9.figshare.28925444.v1
title: Dataset.csv

description: This dataset contains anonymized responses from 239 professionals working in digital product roles (e.g., product managers, product owners, and business developers) across a variety of industries and global regions.The dataset was collected via a structured survey and analyzed using SPSS v30. Each row represents one respondent, and each column corresponds to a survey item measured on a <b>5-point Likert scale (1 = Strongly Disagree, 5 = Strongly Agree)</b>.The variables cover the following <b>constructs</b>:<b>Customer-Driven Product Development (CDPD)</b>: Customer involvement, market analysis, product personalization <i>(Variables marked as “C”)</i><b>Open Innovation Networks (OIN)</b>: Knowledge co-creation, knowledge sharing, technology integration <i>(Variables marked as “K”)</i><b>Organizational Digital Agility (ODA)</b>: Digital adaptation, risk management, digital recovery and continuity <i>(Variables marked as “D”)</i><b>AI-Integrated Project Management (AI-PM)</b>: AI utilization, integration, and effectiveness <i>(Variables marked as “A”)</i><b>Digital Product Success (DPS)</b>: Product performance, market results, innovation quality <i>(Variables marked as “P”)</i>In addition, the dataset includes socio-demographic variables such as gender, education level, years of experience, company size, and geographic region.
DOI: 10.17632/2wcz2h9j3j
title: Data for: An Ensemble Machine Learning Approach for Prediction and Optimization of Modulus of Elasticity of Recycled Aggregate Concrete

description: The document includes algorithms implemented within the standalone and ensemble machine learning models presented in the study.
DOI: 10.6084/m9.figshare.25560351.v3
title: v1.0.1 Data and Code for "Private management of African protected areas improves wildlife and tourism outcomes but with security concerns in conflict regions"

description: Protected areas can conserve wildlife and benefit people when managed effectively. African governments increasingly delegate the management of protected areas to private, non-governmental organizations, hoping that private organizations' significant resources and technical capacities actualize protected areas' potential. Does private management improve outcomes compared to a counterfactual of government management? We leverage the transfer of management authority from governments to African Parks (AP)---the largest private manager of protected areas in Africa---to show that private management significantly improves wildlife outcomes via reduced elephant poaching and increased bird abundances. Our results also suggest that AP's management augments tourism, while the effect on rural wealth is inconclusive. However, AP's management increases the risk of armed groups targeting civilians, which could be an unintended outcome of AP's improved monitoring and enforcement systems. These findings reveal an intricate interplay between conservation, economic development, and security under privately-managed protected areas in Africa.
DOI: 10.6084/m9.figshare.28269101.v1
title: Data: physco-chemical mixed wastes and 12 treatments for biogas production

description: Physco-chemical mixed wastes and 12 treatments for biogas production Excell
DOI: 10.6084/m9.figshare.3482504.v1
title: Supplementary Material for: Risk of Ophthalmic Adverse Effects in Patients Treated with MEK Inhibitors: A Systematic Review and Meta-Analysis

description: <i>Objectives:</i> This meta-analysis aims to evaluate the risk of ophthalmic adverse effects associated with MEK inhibitors. <i>Methods:</i> A literature search was conducted in PubMed and the Cochrane Library to identify randomized clinical trials (RCTs) which have been designed to evaluate the efficacy and safety of MEK inhibitors. Overall risk of ophthalmic adverse effects, chorioretinopathy, retinal detachment, blurred vision, uveitis, and eye haemorrhage were the assessed outcomes. Peto odds ratios (ORs) with their 95% confidence intervals (CIs) were pooled. Between-study heterogeneity was assessed using I2 statistics. <i>Results:</i> Thirteen RCTs were included in this meta-analysis. Overall, MEK inhibitors were associated with an increased risk of ophthalmic adverse effects (OR 2.24; 95% CI 1.75-2.87; p &lt; 0.0001; I2 = 86.5%). An increased risk was also estimated for chorioretinopathy (OR 5.44; 95% CI 2.89-10.23; p &lt; 0.0001; I2 = 0%), retinal detachment (OR 6.54; 95% CI 3.28-13.03; p &lt; 0.0001; I2 = 0%), and blurred vision (OR 2.30; 95% CI 1.50-3.54; p &lt; 0.0001; I2 = 60.1%), but not for uveitis (OR 0.99; 95% CI 0.14-7.03; p = 0.991; I2 = 2.9%) or eye haemorrhage (OR 0.72; 95% CI 0.04-12.39; p = 0.824; I2 = 29.8%). <i>Conclusions:</i> Treatment with MEK inhibitors seems to increase the risk of ophthalmic adverse effects. A need for monitoring the safety of this class of drugs exists. Regulators, clinicians, and other health care professionals must, together, be involved in this process.
DOI: 10.6084/m9.figshare.5769840.v1
title: Video magnification to detect human vital signs

description: Videos that allow detecting small movements in human bodies due to breathing that are invisible to the naked eye<br>forensic_orig.avi: original video<br>forensic_elvm.avi: magnified video using an Eulerian method<br>forensic_pbvm.avi: magnified video using a Phase-based method
DOI: 10.6084/m9.figshare.8234345.v2
title: Seismic_Resolution.xlsx

description: Excel spreadsheet to quickly calculate the vertical and horizontal resolution, and the Fresnel Zone of the selection interval of seismic data. <br>Inputs required are time (milliseconds), dominant frequency (Hz), sonic velocity (microseconds/foot) and depth (m). <br>The spreadsheet can be edited and provides the basis for your own calculations.
DOI: 10.17632/kj57yp96s7
title: Gait and Physical Activity in Multiple Sclerosis

description: This data refer to spatio-temporal parameters of gait (acquired using a single inertial sensor located in the low back, BTS G-Sensor) and physical activity amount and intensity (collected for 7 consecutive days using a wrist-worn activity tracker Actigraph GTX3+) in a sample of 31 individual aftected by Multiple Sclerosis (17 female, 14 male).
DOI: 10.6084/m9.figshare.28908971.v1
title: Carbonate paramters in the Negomo Lagoon, Sri Lanka

description: This data set is for the paper " Acidification enhanced by recurring air-sea gas exchange between eutrophication and hypoxia in shallow tropical lagoon ."
DOI: 10.6084/m9.figshare.21814797.v1
title: Transcriptome Changes and Metabolic Outcomes after Bariatric Surgery in Adults with Obesity and Type 2 Diabetes-Supplementary Dataset 1 and 2

description: <strong>Abstract</strong> <br> <strong>Context</strong> Bariatric surgery has been shown to be effective in inducing complete remission of type 2 diabetes in adults with obesity. However, its efficacy in achieving complete diabetes remission remains variable and difficult to predict before surgery. <br> <strong>Objectives</strong> We aimed to characterize bariatric surgery-induced transcriptome changes associated with diabetes remission and the predictive role of the baseline transcriptome. <br> <strong>Patients and Methods</strong> We performed a whole genome microarray in peripheral mononuclear cells at baseline (before surgery) and 2 and 12 months after bariatric surgery in a prospective cohort of 26 adults with obesity and type 2 diabetes. We applied machine learning to the baseline transcriptome to identify genes that predict metabolic outcomes. We validated the microarray expression profile using a real-time polymerase chain reaction. <br> <strong>Results</strong> Sixteen patients entered diabetes remission at 12 months and ten did not. The gene expression analysis showed similarities and differences between responders and nonresponders. The difference included the expression of critical genes (SKT4, SIRT1, and TNF superfamily), metabolic and signaling pathways (Hippo, Sirtuin, ARE-Mediated mRNA Degradation, MSP-RON, and Huntington), and predicted biological functions (beta cell growth and proliferation, insulin and glucose metabolism, energy balance, inflammation, and neurodegeneration). Modeling the baseline transcriptome identified ten genes that could hypothetically predict the metabolic outcome before bariatric surgery. <br> <strong>Conclusions</strong> The changes in the transcriptome after bariatric surgery distinguish patients in whom diabetes enters complete remission from those who do not. The baseline transcriptome can contribute to the prediction of bariatric surgery-induced diabetes remission preoperatively.