cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.fj974.2/8.2
title: DataRecord_2_DLC_Animal_List_05Feb2019

description: The DLC Animal List data file, containing 32 variables for 3,749 individuals representing 27 taxa in all stages of life. These are the raw data used to calculate longevity and reproductive variables in the life history tables. This file is stored as comma separated values.
DOI: 10.5061/dryad.fj974.2/9.2
title: DataRecord_3_DLC_Weight_File_05Feb2019

description: The DLC Weight data file, containing 33 variables relating to 82,6109 weight measurements across 2270 individuals and 27 taxa. These are the raw data used to calculate body mass variables in the life history tables. This file is stored as comma separated values.
DOI: 10.5061/dryad.gc7qf50/1
title: Breeding parameters and egg positions

description: 1. Breed Data tab, 2. Nestling Data tab, 3. Egg Data tab, 4. Egg distances tab
DOI: 10.5061/dryad.h4r1003/1
title: README_Metadata for Atkins et al. data files

description: Metadata description for all data files - please read before viewing each file.
DOI: 10.5061/dryad.h4r1003/2
title: Raw_GPS_all_bushbuck_2016

description: Raw, unannotated GPS data from 12 bushbuck collared in August-September 2016 in Gorongosa National Park, Mozambique.
DOI: 10.5061/dryad.h4r1003/3
title: Raw_GPS_all_bushbuck_2015

description: Raw, unannotated GPS data from 11 bushbuck that were collared in 2015 in Gorongosa National Park, Mozambique
DOI: 10.5061/dryad.h4r1003/4
title: 2015_Bushbuck_annotated_GPS_data_Figure1C_E

description: Annotated GPS data from 11 bushbuck collared in 2015 in Gorongosa National Park, Mozambique. Used to create Figures 1C and E in the paper.
DOI: 10.5061/dryad.h4r1003/5
title: 2016_Bushbuck_map_data_FigureS1

description: Filtered and annotated GPS data from 12 bushbuck collared in 2016 in Gorongosa National Park, Mozambique. Used to create Figure S1 in the Supplementary Materials.
DOI: 10.5061/dryad.hj4pb70/1
title: L23 barrel cortex responses to optogenetic and whisker stimuli
DOI: 10.5061/dryad.j307mv3/2
title: Pterin and carotenoid quantification data, qPCR results
DOI: 10.5061/dryad.j307mv3/3
title: PodMur1.0
DOI: 10.5061/dryad.j348s75/1
title: Mom_repro

description: Mothers breeding data (1st generation)
DOI: 10.5061/dryad.j348s75/2
title: Chick_growth

description: Chick growth data
DOI: 10.5061/dryad.kt647sq/1
title: Caceres-Escobar et al., People and Nature (2019) data

description: File containing aggregated responses for the eSurvey (total = 13 respondents). The data is presented following the requirements of the Human Research Ethics Committee (HREC) of The University of Queensland (Approval number: 2016001001).
DOI: 10.5061/dryad.mc443qs/1
title: Vine community data

description: The document includes vine diversity data along with other abiotic and biotic variables that characterize the vine communities at three different scales (180, 270 and 360 m^2).
DOI: 10.5061/dryad.pg8q56g/1
title: README
DOI: 10.5061/dryad.pg8q56g/5
title: Fst results

description: Fst results for pairwise population comparisons
DOI: 10.5061/dryad.pg8q56g/6
title: GxP results

description: GxP results for pairwise population comparisons
DOI: 10.5061/dryad.sm12b53/2
title: mice data includes AST, MDA, GSH, qReal-time PCR.
DOI: 10.5061/dryad.tj1p3.3
title: Data from: Phylogenomic mining of the mints reveals multiple mechanisms contributing to the evolution of chemical diversity in Lamiaceae
DOI: 10.5061/dryad.tj1p3.3/1.3
title: Ancestral state reconstructions.zip

description: Ancestral state reconstructions of iridoids, monoterpenes, and sesquiterpenes across all 52 Lamiales species (Zipped folder).
DOI: 10.5061/dryad.tj1p3.3/11.3
title: dryad_files_master_readme_v3.rtf

description: Readme
DOI: 10.5061/dryad.tj1p3.3/2.3
title: Expression abundances and functional annotataion of all 52 Lamiales species.zip

description: This folder contains expression abundance and functional annotation of all representative transcripts (the longest isoforms) of 52 Lamiales species (48 Lamiaceae species plus 4 outgroup species) (Zipped folder).
DOI: 10.5061/dryad.tj1p3.3/3.3
title: GC-MS chromatograms of 52 Lamiales species.pdf

description: GC-MS data from all 52 species (PDF file).
DOI: 10.5061/dryad.tj1p3.3/9.3
title: Consortium_Members

description: List of Mint Evolutionary Genomics Consortium members and institutional affiliations.
DOI: 10.5061/dryad.tn73h20/1
title: Acclimation & deacclimmation in green hydra

description: Each tab contains the data correspondent to figures in the paper
DOI: 10.17632/2y7b7xd8b8.1
title: Data for: Supersize me. Larger unit size increases children’s vegetable consumption, an example with carrots

description: Overall, the consumption of whole carrots (median intake: 39g after 10 minutes) was significantly higher (t(51)=-2.3, p=0.02), than the consumption of diced carrots (median intake: 26g after 10 minutes), and trended towards being higher after 90 minutes (median intake whole: 126g, median intake diced: 66g). The majority of children (67%) consumed more whole than diced carrots with the increase in consumption being on average 75% greater when carrots were presented whole as opposed to diced. Although liking of carrots was significantly correlated with consumption (diced: r=0.63, p&lt;0.0001; whole r=0.51, p&lt;0.0001), a difference in liking or a change in liking during consumption could not explain the difference between the consumption of diced and whole carrots.
DOI: 10.17632/35r8497x39.1
title: Data for: Multilocus fragment analysis of Cryptosporidium parvum from pre-weaned calves in Colombia

description: Multilocus subtypes identified in C. parvum isolates from calves in Colombia, based on the combination of nine microsatellites/minisatellites and the gp60 locus
DOI: 10.17632/5d26ctjwsr.1
title: Data for: Semisynthesis of epoxy-pimarane diterpenoids from kirenol and their FXa inhibition activities

description: The suppleSupplementary data (1H and 13C spectra of compounds 2-8; and X-ray crystallographic data of compounds 4)
DOI: 10.17632/5gx84f674k.1
title: Data for: Studying the Effect of Bioswales on Nutrient Pollution in Urban Combined Sewer Systems

description: Water quality data contains nitrogen (total nitrogen, ammonium, nitrate, nitrite) and phosphorus (total phosphorus, phosphate) species for stormwater influent, infiltrate, and overflow for 572 samples over 42 storms at seven bioswales located in the Bronx, NYC.
DOI: 10.17632/78225wryfc.1
title: Data for: Estimating Growth Over the Long Run

description: Data on GDP estimates in 1929 international dollars, population, employment and relative levels of hours worked.
DOI: 10.17632/7pv3w6v929.1
title: Data for: Revisiting the methodology for asphaltenes precipitation

description: Raw data of the FTIR and DSC analysis for the asphaltenic fractions of the distinct oils and methodologies
DOI: 10.17632/c7cpnw32j6.1
title: Data for: Computer Vision-based Concrete Crack Detection using U-Net Fully Convolutional Networks

description: The three subdirectories under the ./code/data/ directory respectively store the train set data, the verification set data, and the test set data. The ./code/cnn_with_slide_window/ directory stores the code for Cha’s CNN. cleandata.ipynb preprocesses the data and stores it in the ./data/ directory. The ./logs/ and ./trained_models/ directory store the training process log and the trained model. dataset.py is the I/O related code. Myutils.py is the tool class code. model.py defines the network structure. train.py is the training code and predict.py is the prediction code. The ./code/cunet/ directory stores U-Net implementation code. Dice_coeff_loos.py, focalloss.py and lovasz_losses.py are the user defined loss functions. The functions of other files in ./code/cunet/ are similar to the of files with the same name in ./code/cnn_with_slide_window/. Environment is Python 3.6 and Pytorch 1.0 (&gt; 0.4). Display memory requirement is 5000MB. Recommended minimum hardware is GTX1060 6GB.
DOI: 10.17632/kt8n2k8274.1
title: Data for: Integrated Pore-Scale Characterization of Mercury Injection/Imbibition and Isothermal Adsorption/Desorption Experiments and Mineralogy Distribution Using Dendroidal Model for Shales

description: These are the experimental data used to construct the pore-network model.
DOI: 10.17632/zshzp36pjc.1
title: Data for: A best-estimated correlation for prediction of nucleation superheat in sodium-cooled fast reactor

description: Raw data of Fig.4-Fig.6
DOI: 10.5061/dryad.0pc151n/3
title: Electronic Supplementary Material

description: Electronic supplementary material for RSOS-182087.R1
DOI: 10.5061/dryad.1619515/1
title: abiotic_datas_no_silvi_forestype.csv

description: Abiotic measurements among forest types at desiccation enclosures
DOI: 10.5061/dryad.1619515/7
title: READ_ME

description: This file explains all of the variables in each of the datasets that accompany the manuscript
DOI: 10.5061/dryad.1q33s69/14
title: B_lineatus-TGFB2-3groups

description: Buteo lineatus TGFB2 DNA sequences and script for Arlequin
DOI: 10.5061/dryad.1q33s69/15
title: B_lineatus-ND2-CA_vs_East

description: Buteo lineatus ND2 DNA sequence file for east vs west Arlequin analysis
DOI: 10.5061/dryad.22b3c31/1
title: Shell measurements of Xenocrania haimei (Reed, 1915)

description: This figure Based on data from 1) Shuanghe of Changning and 2) Tianbatou and 3) Huangtian of Gongxian, southern Sichuan; 4) Miaoquan of Xiushan, southern Chongqing; 5) Chaqi of Yichang, western Hubei; and 6) Mandalay Division, Myanmar.
DOI: 10.5061/dryad.22b3c31/2
title: Total numbers of ribs or spine rays in relation to shell width of Xenocrania haimei (Reed, 1915)

description: This figure Based on data from 1) Shuanghe of Changning and 2) Tianbatou and 3) Huangtian of Gongxian, southern Sichuan; 4) Miaoquan of Xiushan, southern Chongqing; 5) Chaqi of Yichang, western Hubei; and 6) Mandalay Division, Myanmar.
DOI: 10.5061/dryad.360b25r/1
title: HauberetalDataJRSI copy

description: Pigment Concentration and Reflectance Data of Murre Eggshells
DOI: 10.5061/dryad.3hg0054/1
title: birds, shrub cover, tree cover, total woody cover

description: zip file contains for each plot: birds relative frequency values, shrub/tree/total woody cover values
DOI: 10.5061/dryad.4nm4vv0/1
title: R1 Appendix 1- Arnal et al.

description: Appendix 1. List of new and some previously described fossil specimens studied in this work. * indicate those fossils figured by Frailey & Campbell (2004). ** indicates holotype.  Measurements are in millimeters (mm).
DOI: 10.5061/dryad.533qk3d/1
title: Code ecosystem services in agroecosystems

description: Code that uses the differential equations model to simulate the mean provision and temporal variability of ecosystem services in intensively-managed agricultural landscapes
DOI: 10.5061/dryad.8030nq9/2
title: Assemblies and Sequence Data

description: Assemblies and sequence data for avian haemosporidians. The 'assemblies' directory contains the contigs from the last iteration of aTRAM 2.0 assemblies for all individuals processed. The 'stitched_exons' directory contains all sequences found for each gene using exon_stitching2.0; results are summarized by gene and by taxon in the 'Summary_stats...' CSV files. The 'individual_fastas' directory contains fasta sequences for the 15 successful individuals.
DOI: 10.5061/dryad.8030nq9/3
title: Alignments and Phylogenetic Analyses

description: Input and output files from phylogenetic analyses using RAxML and SVDQuartets. Analyses with nuclear datasets were conducted with different levels of completeness (50%, 70%, 90% taxa present for each locus), and mitochondrial analyses were done separately. Analyses were also conducted with all successful individuals (n=19) or excluding the two individuals with mixed infections (n=17).
DOI: 10.5061/dryad.8g7rg8q/1
title: Larval weight, ADH activity and family structure

description: The "egg" tab contains the number of eggs collected from each female on different days. The "weight" tab contains the information on the number and weight of third instar larvae that's collected from each rearing vial. The "dataADHactivity" contains the data on all ADH activity measures.
DOI: 10.5061/dryad.8g7rg8q/2
title: R code for Analysis

description: R code for the analyses.
DOI: 10.5061/dryad.bn695rf/1
title: MS files

description: LCMS and GCMS files in .CEF and .CDF format respectively. The processing sequence is detailed in README file.
DOI: 10.5061/dryad.fb821k5/1
title: Currano et al_ Paleobiology_Supplemental Methods and Morphotype Information

description: This file contains U-Pb geochronology methods and data, Wind River Basin leaf morphotype descriptions and photographs, Wind River Basin floral census counts, a table of plant occurrences compared among the three study sites, and leaf mass per area reconstruction methods and results.
DOI: 10.5061/dryad.fj974.1/8.1
title: DataRecord_2_DLC_Animal_List_06Jun14

description: The DLC Animal List contains 32 variables for 3,627 individuals representing 27strepsirrhine taxa. This file is stored as comma separated values.
DOI: 10.5061/dryad.fj974.1/9.1
title: DataRecord_3_DLC_Weight_File_06Jun14

description: The DLC Weight File contains 33 variables relating to 65,692 weight measurements across 2174 individuals and 27 strepsirrhine taxa. This file is stored as comma separated values.
DOI: 10.5061/dryad.h4r1003/10
title: Diet_quality_data_DE_DP

description: The diet quality data for 11 woodland and 7 floodplain bushbuck calculated from fecal samples collected in July - August 2016.
DOI: 10.5061/dryad.h4r1003/11
title: Top_10_diet_plants_DP_DE

description: The nutritional quality data for some of the top 10 diet plant species for floodplain and woodland bushbuck.
DOI: 10.5061/dryad.h4r1003/12
title: Tragelaphine_condition_data_PCA

description: Body condition metrics from 66 female Tragelaphine antelopes and the associated scores for each individual from a principal components analysis.
DOI: 10.5061/dryad.h4r1003/13
title: Bergia_RRA_data

description: A subset of the filtered sequencing data resulting from the fecal DNA metabarcoding analysis to characterize diets of large mammalian herbivores in Gorongosa National Park.
DOI: 10.5061/dryad.h4r1003/14
title: Bergia_cage_experiment_all_data

description: The plant measurements of Bergia mossambicensis for the herbivore exclusion experiments. Data was collected by Justine L. Atkins in July 2017.
DOI: 10.5061/dryad.h4r1003/6
title: Bushbuck_woodland_floodplain_densities

description: Densities of floodplain and woodland bushbuck from aerial count data collected in Gorongosa National Park, Mozambique, between 2002 and 2016.
DOI: 10.5061/dryad.h4r1003/7
title: 2016_Bushbuck_annotated_GPS_data_experimental_response_variables

description: Filtered and annotated GPS data from 12 bushbuck collared in 2016 Gorongosa National Park, Mozambique. This file contains the relevant data from the predator simulation experiments - nighttime locations, 48 hours before and 48 hours after both predator and procedural control cue deployment, for each individual.
DOI: 10.5061/dryad.h4r1003/8
title: Bushbuck_Diet_GNP2016_trnL_filtered_data
DOI: 10.5061/dryad.h4r1003/9
title: Metadata_fecal samples_bushbuck_GNP2016
DOI: 10.5061/dryad.hb1g263/1
title: All_SNPs

description: SNP genotype data (012 matrix of 26189 SNPs) for all 175 individuals sampled from the breeding ground.  Column 1 indicates region, column 2 indicates site ID, and column 3 indicates individual ID.  The remaining columns are the genotype data.
DOI: 10.5061/dryad.hb1g263/2
title: 600 SNPs for population assignment

description: Genotype data (012 matrix, 600 SNPs) for the 265 individuals sampled across the breeding and nonbreeding grounds.  These are the markers used for population assignment to determine migratory connectivity.  Column 1 provides the individual ID and column 2 provides the site ID.  The remaining columns indicate the genotype data.
DOI: 10.5061/dryad.hb1g263/3
title: Climate Data

description: Climate data for breeding sites downloaded from ClimateNA. Climate data has been generated with the ClimateNA v5.10 software package, available at http://tinyurl.com/ClimateNA, based on methodology described by Wang et al. (2016). Wang, T., Hamann, A., Spittlehouse, D.L. and Carroll, C. 2016. Locally downscaled and spatially customizable climate data for historical and future periods for North America. PLOS ONE 11(6): e0156720.
DOI: 10.5061/dryad.hf03913/1
title: Chong Sun original data
DOI: 10.5061/dryad.j348s75/3
title: Chick_immune

description: Chick immune data (LPS and MAb)
DOI: 10.5061/dryad.j348s75/4
title: Daughter_breeding_181018

description: Daughter (2nd generation) reproduction data
DOI: 10.5061/dryad.j348s75/5
title: Mating

description: Male (son, 2nd generation) mating trial data
DOI: 10.5061/dryad.kd1qt0p/1
title: Figure 2 - Source Data 1

description: This zip archive contains the original z-stack used for Figure 2, panels A-C. It is provided as a TIF file, which is readable by FIJI. All imaging parameters are included in the image metadata.
DOI: 10.5061/dryad.kd1qt0p/2
title: Figure 2 - Source Data 2

description: This zip archive contains the original z-stack used for Figure 2, panel D. It is provided as a TIF file, which is readable by FIJI. All imaging parameters are included in the image metadata.
DOI: 10.5061/dryad.kd1qt0p/3
title: Figure 2 - Source Data 3

description: This zip archive contains the original z-stack used for Figure 2, panel E. It is provided as a TIF file, which is readable by FIJI. All imaging parameters are included in the image metadata.
DOI: 10.5061/dryad.m4dr156/1
title: Sequence data for simulation studies

description: Multi-sequence alignments for simulation study 1 (cases 1a-1c) simulation study 2 (cases 2a-2h) and simulation study 3 (cases 3a-3c).
DOI: 10.5061/dryad.m4dr156/2
title: Newick tree files for simulation studies

description: Newick formatted (parenthetical notation) tree files, including branch lengths, used in each simulation study.  The scale of the branch lengths is mean number of substitutions per codon
DOI: 10.5061/dryad.m4dr156/3
title: COLD program commands for simulation studies

description: Commands required to generate the sequence data of each simulation scenario using the COLD program
DOI: 10.5061/dryad.m4dr156/4
title: Names of genes in the real data analysis

description: Full names and ID numbers for the 24 Streptococcus transmembrane proteins analyzed.
DOI: 10.5061/dryad.m4dr156/5
title: Streptococcus gene sequence data

description: Multi-sequence alignments for the 24 Streptococcus transmembrane proteins. Ambiguous alignment positions are removed.
DOI: 10.5061/dryad.m4dr156/6
title: Gene trees for each Streptococcus gene

description: Newick formatted (parenthetical notation) tree files, including branch lengths, for each of the 24 Streptococcus transmembrane proteins analyzed.  The scale of the branch lengths is mean number of substitutions per codon
DOI: 10.5061/dryad.nq02fm3/1
title: Data

description: This folder contains 1.) the metadatabase of 22 data sources with 115,356 standardised demographic records for 14,529 taxonomically standardised species of 10 standardised demographic variables that were used in the article, 2.) the Demographic species knowledge index (DSKI), which indicates the amount of knowledge on mortality and fertility for a total of 32,144 species, which was calculated based on the amount of information present in the “DemographicDatabase.csv” used in the article. Additionally it includes the IUCN Red List Status and if the species is present in a zoo or aquarium in ZIMS, and the species taxonomic id for Catalog of Life and GBIF.
DOI: 10.5061/dryad.nq02fm3/2
title: MetaData

description: The folder contains detailed documentation of the content of the data files in the folder “Data”: 1.) the documentation of column names, 2.) the references of the 22 demographic source databases, 3.) the original demographic variable names provided in the 22 source databases before demographic standardisation, their definition, and their demographic variable name after standardisation.
DOI: 10.5061/dryad.pg3888r/1
title: MC2 and STSM models and output

description: The MC2 folder contains NetCDF output generated by the dynamic global vegetation model MC2. The STSM folder contains all models and output related to the STSM models.
DOI: 10.5061/dryad.tj1p3.3/10.3
title: Photographs_of_Plants_Used_in_this_Study

description: All 52 species, except Tectona and three outgroups (Aureolaria, Paulownia, Petrea), were kept in a common greenhouse room at the University of Florida with air-conditioning and sampled within a period of six months (July 2015-January 2016). Most plants were sampled between 10:00 AM and 1:00 PM. Mean temperature inside the greenhouse room was 76°F (67–81°F) and mean humidity was 62% (49–75%). All plants were at an adult stage and the majority were at the vegetative stage (i.e., not flowering) when sampled (see Dataset 1 for details). With the exception of four species with limited plant material, fully expanded young leaves were preferentially sampled from a single individual; however, older leaves had to be sampled, especially for species with smaller leaves, to fulfill the total amount of material needed to distribute to perform metabolite profiling and transcriptome sequencing. Photographs were taken on the day of sampling. (Zipped folder).
DOI: 10.5061/dryad.tj1p3.3/12.3
title: 520_genes_MAFFT_alignments.zip

description: This directory contains the original MAFFT alignments in relaxed Phylip multiple sequence alignment format. .phy  (Zipped folder).
DOI: 10.5061/dryad.tj1p3.3/13.3
title: 520_genes_MAFFT_edited_alignments.zip

description: This directory contains all manually edited MAFFT alignments that were analyzed with RAxML. All files are in relaxed Phylip multiple sequence alignment format. _decoded_edited_alignment.phy  (Zipped folder).
DOI: 10.5061/dryad.tj1p3.3/14.3
title: 520_genes_concatenated_alignments.zip

description: This directory contains 3 files: concatenated_matrix_520_genes.phy - matrix analyzed with RAxML  /// concatenated_matrix_520_genes.nex - same matrix as above, but with gene partition info /// concatenated_matrix_table_520_genes.xlsx - matrix characteristics.  (Zipped folder).
DOI: 10.5061/dryad.tj1p3.3/4.3
title: LC-MS data of 52 Lamiales species.zip

description: LC-MS data from all 52 species (Zipped folder).
DOI: 10.5061/dryad.tj1p3.3/5.3
title: OrthoFinder derived orthologous and paralogous groups.zip

description: All orthogroups generated from all 52 Lamiales species and key reference proteomes using OrthoFinder/v0.7.1 usingTransDecoder-predicted peptide sequences (Zipped folder).
DOI: 10.5061/dryad.tj1p3.3/6.3
title: Predicted CDS of all 52 Lamiales species.zip

description: TransDecoder-predicted CDS sequences of all 52 species generated in this study (Zipped folder).
DOI: 10.5061/dryad.tj1p3.3/7.3
title: Predicted peptides of all 52 Lamiales species.zip

description: TransDecoder-predicted peptide sequences of all 52 species generated in this study (Zipped folder).
DOI: 10.5061/dryad.tj1p3.3/8.3
title: Transcriptomes of all 52 Lamiales species.zip

description: Transcriptomes of all 52 species generated in this study (Zipped folder).
DOI: 10.17632/3f8hghhjxf.1
title: Data for: Loss Aversion and lying behavior

description: Data file for the meta-analysis (Stata) Do file for the meta-analysis (Stata) Data and codebook the the experiment conducted on MTurk
DOI: 10.17632/bcgkbyrb2f.1
title: Data for: State inequality, socioeconomic position and subjective cognitive decline in the United States

description: 2015 and 2016 Behavioral Risk Factor Surveillance Study data from states participating in the Subjective Cognitive Decline module (excluding 2015 data from states that participated in both years), matched with 2015 and 2016 state Gini coefficients from the corresponding year (available from the U.S. Census Bureau: https://factfinder.census.gov/).
DOI: 10.17632/cx2m8ddbj6.1
title: Data for: Dissolution of two types of grain boundary phases in a hot-deformed Nd-Fe-B magnet by high-temperature annealing

description: These are original TEM images corresponding to Fig.5