cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25134080.v1
title: Supplementary Material for: Abnormal Shape and Size of the Cardiac Ventricles Are Associated with a Higher Risk of Neonatal Death in Fetuses with Isolated Left Congenital Diaphragmatic Hernia

description: <b><i>Introduction:</i></b> The objective of this study was to evaluate the association between fetal cardiac deformation analysis (CDA) and cardiac function with severe adverse perinatal outcomes in fetuses with isolated left congenital diaphragmatic hernia (CDH). <b><i>Methods:</i></b> CDA in each ventricle (contractility, size, and shape), evaluated by speckle tracking and novel <i>FetalHQ</i> software, and markers of cardiac function (E/A ratios, pulmonary and aortic peak systolic velocities, and sigmoid annular valve diameters), were evaluated in fetuses with isolated left CDH. Two evaluations were performed: at referral (CDA and function) and within 3 weeks of delivery (CDA). Severe adverse neonatal outcomes were considered neonatal death (ND) or survival with CDH-associated pulmonary hypertension (CDH-PH). Differences and associations between CDA, cardiac function, and severe adverse outcomes were estimated. <b><i>Results:</i></b> Fifty fetuses were included, and seventeen (34%) had severe adverse neonatal outcomes (11 ND and 6 survivors with CDH-PH). At first evaluation, the prevalence of a small left ventricle was 34% (17/50) with a higher prevalence among neonates presenting severe adverse outcomes (58.8 [10/17] vs. 21.2% [7/33]; <i>p</i> = 0.01; OR, 5.03 [1.4–19.1; <i>p</i> = 0.01]) and among those presenting with neonatal mortality (8/11 [72.7] vs. 9/39 [23.0%]; <i>p</i> = 0.03; OR, 8.9 [1.9–40.7; <i>p</i> = 0.005]). No differences in cardiac function or strain were noted between fetuses with or without severe adverse outcomes. Within 3 weeks of delivery, the prevalence of small left ventricle was higher (19/34; 55.8%) with a more globular shape (reduced transverse/longitudinal ratio). A globular right ventricle was significantly associated with ND or survival with CDH-PH (OR, 14.2 [1.5–138.3]; <i>p</i> = 0.02). <b><i>Conclusion:</i></b> Fetuses with isolated CDH at risk of perinatal death or survival with CDH-PH had a higher prevalence of a small left ventricle and abnormal shape of the right ventricle.
DOI: 10.6084/m9.figshare.28571673.v1
title: Additional file 10 of Fidgetin-like 2 knockdown increases acute neuroinflammation and improves recovery in a rat model of spinal cord injury

description: Supplementary Material 10
DOI: 10.6084/m9.figshare.14701137.v1
title: Data for Heap et al. (JGR: Solid Earth)

description: Mechanical data accompanying Heap et al. (JGR: Solid Earth). In the file name, "uni" and "trx" stand for uniaxial and triaxial, respectively. The first number in the file name is the block number (e.g., H2A), and the second number is the sample number (e.g., 2). Finally, "d" and "w" stand for dry and wet, respectively.<br>In the uniaxial files:Temps(s) - time in secondssigV(MPa) - axial stress in MPaDefcapt - axial strain from LVDTDefax - axial strain from strain gage (not used here)Defrad - radial strain from strain gage (not used here)Defvol - volumetric strain from strain gage (not used here)<br>Deplctcapt(um) - axial displacement in microns<br>In the triaxial files:<br>Temps(s) - time in seconds<br>Pc(MPa) - confining pressure in MPaPax(MPa) - axial stress in MPaPpam(MPa) - pore fluid pressure in MPaQ(MPa) - differential stress in MPaPmoy(MPa) - effective mean stress in MPaDefaxcapt - axial strain from LVDTDefvolfluide - sample porosity changeDefvolconf - change in confining fluid volume in cm2Deplct(um) - axial displacement in microns<br>
DOI: 10.6084/m9.figshare.20010545.v1
title: processed data

description: Processed datasets in h5ad form, Similarity matrix for constructing dendrogram (npy form) <br>
DOI: 10.6084/m9.figshare.28281086.v1
title: Emodata

description: We built a motion-controlled robotic system. The robotic arm's end-effector data and joint data while the users are stimulated into different emotions are collected. The robot data can be analysed to detect user emotion.
DOI: 10.6084/m9.figshare.14450196.v1
title: Supplemental Table 2 Differential Pathways.xlsx

description: Differentially regulated pathways for: human bulk kidney, human LMD glomerular and proximal tubules (PT), mouse bulk kidney and mouse snRNAseq podocyte and PT clusters<br>
DOI: 10.6084/m9.figshare.23689185.v3
title: Interview Transcript by LTO

description: Interview transcript for 03 November PD
DOI: 10.6084/m9.figshare.14472546.v1
title: Supplementary Material for: Exposure to Chinese Famine in the Early Life, Adulthood Obesity Patterns, and the Incidence of Hypertension: A 22-Year Cohort Study

description: <b><i>Introduction:</i></b> Little is known regarding the joint associations of famine exposure and obesity patterns with the incidence of hypertension. <b><i>Methods:</i></b> We defined famine exposure cohorts as follows: nonexposure (born between 1962 and 1965), fetal life exposure (born between 1959 and 1961), early childhood exposure (born between 1956 and 1958), midchildhood exposure (born between 1953 and 1955), and late childhood exposure (born between 1949 and 1952). Obesity patterns were defined as follows: G−/A−: subjects without neither general obesity nor abdominal obesity; G+/A− or G−/A+: subjects with either general obesity or abdominal obesity; G+/A+: subjects with both general obesity and abdominal obesity. Hypertension was defined as systolic blood pressure ≥140 mm Hg and/or diastolic blood pressure ≥90 mm Hg or current treatment with antihypertensive medications. <b><i>Results:</i></b> There were 5,235 individuals participating in this study. In the subjects with general or abdominal obesity, famine exposure was associated with a lower risk of hypertension. In males with G−/A−, famine exposures in the midchildhood (<i>p</i> = 0.048; HR: 0.700; HR 95% CI: 0.491–0.998) and late childhood (<i>p</i> = 0.002; HR: 0.560; HR 95% CI: 0.374–0.840) were associated with a lower incidence of hypertension. <b><i>Conclusion:</i></b> The coexistence of famine exposure and obesity patterns was associated with the incidence of hypertension.
DOI: 10.6084/m9.figshare.21754328.v1
title: WRFexpts-LinearTheory-outputs

description: WRFexpts-LinearTheory-outputs
DOI: 10.6084/m9.figshare.5657017.v1
title: MOESM1 of Functional dissection of Drosophila melanogaster SUUR protein influence on H3K27me3 profile

description: Additional file 1: Table S1. Coordinates of 193 HMM-defined SSRs. First columnâ chromosome name, second columnâ start coordinate, third columnâ end coordinate. Each line corresponds to a single SSR.
DOI: 10.6084/m9.figshare.14796306.v1
title: Supplementary Material for: Transcutaneous versus Total Serum Bilirubin Measurements in Preterm Infants

description: <b><i>Introduction:</i></b> Transcutaneous bilirubin (TcB) measurement offers a noninvasive approach for bilirubin screening; however, its accuracy in preterm infants is unclear. This study determined the agreement between TcB and total serum bilirubin (TSB) among preterm infants. <b><i>Methods:</i></b> A multisite prospective cohort study was conducted at 3 NICUs in Ontario, Canada, September 2016 to June 2018. Among 296 preterm infants born at 24<sup>0/7</sup> to 35<sup>6/7</sup> weeks, 856 TcB levels were taken at the forehead, sternum, and before and after the initiation of phototherapy with TSB measurements. Bland-Altman plots and 95% limits of agreement (LOA) expressed agreement between TcB and TSB. <b><i>Results:</i></b> The overall mean TcB-TSB difference was −24.5 μmol/L (95% LOA −103.3 to 54.3), 1.6 μmol/L (95% LOA −73.4 to 76.5) before phototherapy, and −31.1 μmol/L (95% LOA −105.5 to 43.4) after the initiation of phototherapy. The overall mean TcB-TSB difference was −15.2 μmol/L (95% LOA −86.8 to 56.3) at the forehead and −24.4 μmol/L (95% LOA −112.9 to 64.0) at the sternum. The mean TcB-TSB difference was −31.4 μmol/L (95% LOA −95.3 to 32.4) among infants born 24–28 weeks, −25.5 μmol/L (95% LOA −102.7 to 51.8) at 29–32 weeks, and −15.9 μmol/L (95% LOA −107.4 to 75.6) at 33–35 weeks. Measures did not differ by maternal ethnicity. <b><i>Conclusion:</i></b> Among preterm infants, TcB may offer a noninvasive, immediate approach to screening for hyperbilirubinemia with more careful use in preterm infants born at &lt;33 weeks’ gestation, as TcB approaches treatment thresholds. Its underestimation of TSB after the initiation of phototherapy warrants the use of TSB for clinical decision-making after the initiation of phototherapy.
DOI: 10.6084/m9.figshare.24849546.v1
title: Xinjiang (XJ) coal base

description: The annual maximum NDVI dataset of Xinjiang (XJ) coal base in China (2013-2022).
DOI: 10.6084/m9.figshare.1385214.v1
title: Bayesian GST inference (BUGS encoded)

description: Bayesian inference of pairwise GSTs
DOI: 10.6084/m9.figshare.20173301.v1
title: Model sensitivity analysis.xlsx

description: Sensitivity analyss of the mathematical model with varying parameters
DOI: 10.6084/m9.figshare.25009634.v1
title: Beverage Consumption, Genetic Predisposition, and Risk of Cardiovascular Disease among Adults with Type 2 Diabetes-Supplementary materials.docx

description: This data is an Online Supplemental Material of my research published in the <i>Journal of Clinical Endocrinology & Metabolism</i>, entitled “Beverage Consumption, Genetic Predisposition, and Risk of Cardiovascular Disease among Adults with Type 2 Diabetes”.<br>
DOI: 10.6084/m9.figshare.3528899.v1
title: Appendix E. A table showing effect sizes and variances used in meta-analysis of induced defenses elicited and expressed in leaves and roots.

description: A table showing effect sizes and variances used in meta-analysis of induced defenses elicited and expressed in leaves and roots.
DOI: 10.5522/04/13488330.v1
title: Hyponatraemia following transsphenoidal surgery

description: The data for all patients who had transsphenoidal surgery at University College London Hospitals NHS Foundation Trust between January 2016 and December 2019. Sodium levels postoperatively were recorded for those patients developed hyponatraemia after surgery. Data on tumour pathology, patient's characteristics, surgeons and hospital stay were recorded for all patients.
DOI: 10.6084/m9.figshare.22269535.v1
title: fores_logging_specialpurpose.tif

description: forestry residues from the logging of the special purpose forest
DOI: 10.6084/m9.figshare.25138118.v1
title: Supplementary Material for: A New and Practical Model of Human-like Ascending Aorta Aneurysm in Rats

description: Introduction: Ascending aortic aneurysm is a serious health risk. In order to study ascending aortic aneurysms, elastase and calcium ion treatment for aneurysm formation are mainly used, but their aneurysm formation time is long, the aneurysm formation rate is low. Thus, this study aimed to construct a rat model of ascending aorta aneurysm with a short modeling time and high aneurysm formation rate, which may mimic the pathological processes of human ascending aorta aneurysm. 
Methods: Cushion needles with different pipe diameters (1.0, 1.2, 1.4 and 1.6 mm) were used to establish a human-like rat model of ascending aortic aneurysm by narrowing the ascending aorta of rats and increasing the force of blood flow on the vessel wall. The vascular diameters were evaluated using color Doppler ultrasonography after two weeks. The characteristics of ascending aortic aneurysm in rats were detected by Masson’s trichrome staining, Verhoeff’s Van Gieson staining and hematoxylin and eosin staining while RT-PCR were utilized to assess the total RNA of cytokine interleukin-1β, interleukin 6, transforming growth factor-beta1 and metalloproteinase 2.
Results: Two weeks after surgery, the ultrasound images and the statistical analysis demonstrated that the diameter of the ascending aorta in rats increased more than 1.5 times, similar to that in humans, indicating the success of animal modeling of ascending aortic aneurysm. Moreover, the optimal constriction diameter of the ascending aortic aneurysm model is 1.4 mm by the statistical analysis of the rate of ascending aortic aneurysm and mortality rate in rats with different constriction diameters. 
Conclusions: The human-like ascending aortic aneurysm model developed in this study can be used for the studies of the pathological processes and mechanisms in ascending aortic aneurysm in a more clinically relevant fashion.
DOI: 10.6084/m9.figshare.7165118.v2
title: Postural Sway Abnormalities in Schizotypal Personality Disorder - data and analyses

description: This represents all the raw data from our paper published in "Schizophrenia Bulletin", MATLAB code for analysing it, R code for generating the statistics and figures, and a complete manuscript written in RMarkdown which should replicate the published results in the paper using the raw datasheets provided. There are also full supplementary analyses in free statistics programs JASP and JAMOVI.
DOI: 10.6084/m9.figshare.27021013.v1
title: _I love you and I'm here for you__ Public Intimacy on Anonymous Digital Platforms.xlsx

description: Anonymous digital intimate publics (ADIPs) are digital platforms where anonymous posters share intimate stories. Because these platforms are anonymous, conventions such as user profiles, time stamps and ‘likes’ are not part of the site’s functionality. Nonetheless, intimate connections are shared and developed on these sites. Rather than an isolated occurrence, multiple platforms have emerged with similarities in the intimate connection and communication that takes place on ADIPS. This research uses Lauren Berlant’s <i>intimate publics</i> to build a conceptual framework which sees intimacy as a broad and often ephemeral occurrence which creates worlds and connects communities. Building on existing literature in the field of digital intimate publics, this research considers how anonymity and more-than-human actors contribute to the dynamics of ADIPs. This research compares similarities across three ADIPs: <i>Queering the Map</i>, <i>PostSecret</i>, and the City of Melbourne’s tree email program. By ascertaining the thematic similarities of the posts, further theoretical insights can be made about how ADIPs dissolve the artificial divide between public and private, reveal the capacity for intimacy-building in ephemeral and imagined circumstances, and ultimately demonstrate a repeated drive to challenge the current distant norms of contemporary Western intimacy.
DOI: 10.6084/m9.figshare.15029361.v1
title: Halisarca dujardini draft genomic scaffolds containing ferritin genes

description: Genomic DNA was isolated from sponge cells, the DNA library was prepared and sequenced, and the draft genome was assembled and annotated as described in the article. The published file constists of two scaffolds containing HdF1a/b and HdF2 ferritin genes.
DOI: 10.6084/m9.figshare.c.3697393_d1.v1
title: MOESM5 of NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges

description: Additional file 5. Validation reports. Validation reports for EEM parameter sets, calculated in parameterization case study and for EEM parameter sets, tested in validation case study.
DOI: 10.6084/m9.figshare.21918963.v1
title: Isabel Simulation Data for JGR-Atmospheres

description: The model-simulated atmospheric fields (including condensed water content, vertical velocity, and radar reflectivity factors, as described in section 3). The file name format is starttime_endtime_INCUS_Isabel.mat, with “starttime” and “endtime” as in the following example: 060200_060330_INCUS_Isabel.mat The files are all in .mat format. The Matlab code titled “Forward_sensitivity.m” will read the arrays containing the values of all the physical variables. The python script titled "wrapper_ff_neuralnet.py" is a python code that performs the detection of updrafts detailed in Section 4 using a binary classifer neural network.
DOI: 10.6084/m9.figshare.23736567.v1
title: Raw data for producing figures

description: Raw data to produce figures
DOI: 10.6084/m9.figshare.28746281.v4
title: Training Area Datasets

description: Download our Sentinel-2 imagery dataset to facilitate your model training processes. This high-resolution, multispectral collection is ideal for applications in emergency response, transportation, and wildfire detection. This training area covers the community of Corona, California.
DOI: 10.6084/m9.figshare.26827867.v1
title: 3D Models

description: PLOS ONETitle: <b>Design of Multi-modal Antenna Arrays for Microwave Hyperthermia and ¹H/¹⁹F MRI Monitoring of Drug Release</b>Authors: Daniel Hernandez, Taewoo Nam, Eunwoo Lee, Jae Jun Lee, Kisoo Kim<i> and Kyoung Nam Kim</i>
DOI: 10.6084/m9.figshare.13450931.v1
title: de novo transcriptome assembly of Callitriche stagnalis and Callitriche japonica

description: de novo transcriptome asssembly sequences of <i>Callitriche stagnalis</i> and <i>Callitriche japonica</i>. Brief annotation tables are also included.
DOI: 10.6084/m9.figshare.14036189.v1
title: The impact of public acceptance on cost-efficiency and environmental sustainability in decentralized energy systems

description: This dataset comprises data generated in the study "The impact of public acceptance on cost-efficiency and environmental sustainability in decentralized energy systems". In this study, the impact of public acceptance on optimal decetraliced energy systems by 2050 was analyzed. The LCOEs show the levelized costs of energy for the Reference Scenario. The Delta-LCOEs and Delta-CO2-emissions show the increase in costs and emissions if wind is excluded due to scenic landscapes in the respective municipality. The dataset also contains the municipal cluster, which was determined in the following study: https://www.sciencedirect.com/science/article/abs/pii/S095717871930013X.
DOI: 10.6084/m9.figshare.28379507.v1
title: Supplementary Material for: Vancomycin For the Induction and Maintenance of Remission in Biologics Refractory Patient with Ulcerative Colitis and Primary Sclerosing Cholangitis Post Liver and Bone Marrow Transplantation

description: Abstract 
Introduction:
Inflammatory bowel disease-primary sclerosing cholangitis (IBD-PSC) is a unique disease entity that has very poorly understood pathogenesis and unique clinical presentation. Patients with this disease may eventually require liver transplantation as there is no current curative treatment for PSC to halt disease progression for liver failure. Thirty percent of patients with IBD may experience recurrence despite being on immunosuppression. Few studies have shown that vancomycin has been used as a salvage treatment for patients with refractory ulcerative colitis (UC) exacerbation refractory to conventional and biological agents. In this report we discuss the case of 25 years old female with a prior history of sickle cell disease (SCD), UC, post liver transplant secondary to PSC, who developed UC exacerbation refractory to conventional therapies and most biological agents and was induced and maintained in remission with oral vancomycin.
Case Presentation:
This is the case of 25 years old female with a history of sickle cell disease (SCD), ulcerative colitis (UC) and primary sclerosing cholangitis (PSC) who developed liver cirrhosis and underwent liver transplantation. Prior to liver transplantation, she had recurrent exacerbations of ulcerative colitis, refractory conventional therapies and most biological agents. Post liver transplantation, she developed another UC flare despite being treated with ustekinumab. Oral vancomycin 125 mg four times daily was used as salvage therapy post liver transplantation to control her UC.
Conclusion: 
This report supports the use of oral vancomycin in patient with sickle cell disease who had ulcerative colitis exacerbation refractory to conventional and biological agents.
DOI: 10.6084/m9.figshare.5327935.v1
title: Multisensory_emotions.mat

description: The human emotional reactions to stimuli delivered by different sensory modalities is a topic of interest for many disciplines, from Human-Computer-Interaction to cognitive sciences. Different databases of stimuli eliciting emotional reaction are available, tested on a high number of participants. Interestingly, stimuli within one database are always of the same type. In other words, to date, no data was obtained and compared from distinct types of emotion-eliciting stimuli from the same participant. This makes it difficult to use different databases within the same experiment, limiting the complexity of experiments investigating emotional reactions. Moreover, whereas the stimuli and the participants’ rating to the stimuli are available, physiological reactions of participants to the emotional stimuli are often recorded but not shared. Here, we test stimuli delivered either through a visual, auditory, or haptic modality in a within participant experimental design. We provide the results of our study in the form of a MATLAB structure including basic demographics on the participants, the participant’s self-assessment of his/her emotional state, and his/her physiological reactions (i.e., skin conductance).
DOI: 10.6084/m9.figshare.23617539.v1
title: Source data for supplementary information

description: The therapeutic efficacy of whole tumor cell vaccines (TCV) is modest, which has delayed their translation into personalized immunotherapies in the clinic. Here, we developed an innovative and highly potent TCV platform based on photothermal nanoparticle-loaded tumor cell, which could be rationally applied to diverse tumor types to achieve on-demand boost of anti-tumor immune responses for effectively suppressing tumor growth. During the fabrication process, mild photothermal heating by near-infrared (NIR) laser irradiation induced the nanoparticle-bearing tumor cells to express heat shock proteins as endogenous adjuvants. After a single vaccination, non-invasive NIR laser irradiation further induced mild hyperthermia at vaccination site, which promoted the recruitment, activation, and presentation of dendritic cells. Notably, using a new indicator we termed fluctuation of tumor growth rate (FTGR), we rationally determined appropriate irradiation regimens (including optimized irradiation intervals and times). This innovative TCV platform enables on-demand NIR manipulation of immune responses, and we systematically demonstrated potent therapeutic efficacy against six murine models that mimicked a range of clinical requirements, notably including a sophisticated model based on humanized mice and patient-derived tumor xenografts.
DOI: 10.6084/m9.figshare.19140482.v1
title: Annotations

description: Annotation data files associated with:<br>Hanna RE, Hegde M, Fagre CR, DeWeirdt PC, Sangree AK, Szegletes Z, et al. Massively parallel assessment of human variants with base editor screens. Cell. 2021;184: 1064–1080.e20.
DOI: 10.6084/m9.figshare.22047128.v1
title: Supplementary Material for: Advances in Futile Reperfusion following Endovascular Treatment in Acute Ischemic Stroke due to Large Vessel Occlusion

description: <b><i>Background:</i></b> Futile reperfusion (FR) is becoming an urgent issue for acute ischemic stroke patients who underwent endovascular treatment (EVT). Although the recanalization rate has improved after EVT, it is far from translating to increased tissue reperfusion and functional independence. <b><i>Summary:</i></b> Many underlying mechanisms including the “no-reflow” phenomenon, poor collateral flow, venous dysfunction, and inflammation were proposed, but the pathophysiology of FR is still unclear. Clinically, reliable predictors are still yet to be identified, and ongoing trials on shortening the time delay and cytoprotection may provide novel ideas for interventions of FR. <b><i>Key Messages:</i></b> This review will summarize the latest advances in FR and hopefully shed light on potential interventions.