cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22018553.v2
title: Supplementary File 1: Credentials and potential conflicts of interest of contributors to development of the Clinical Practice Guideline

description: This table contains a full account of people who contributed in different ways to the development of the Clinical Practice Guideline. This includes people who were actively involved in the Delphi study. The Table summarises their roles in the process, their affiliations and expertise, and possible conflicts of interest.
DOI: 10.17632/2nwc2ftx9p
title: Supplemental materials for JODS (17279)

description: Table S1. Results of the functional milk powder supplemented with RDE on body weight and organ coefficient in growing rats.
Table S2. Results of the functional milk powder supplemented with RDE on body weight and organ coefficient in OVX rats.
Figure S1. Effects of functional milk powder supplemented with RDE and its combined effect with vitamin D, vitamin K2, and calcium on calcium metabolism study of growing and ovariectomized rats with low-calcium diet.
Figure S2. Effects of functional milk powder on femoral microarchitecture parameters of OVX rats with low-calcium diet.
Figure S3. Effects of functional milk powder supplement with RDE and its combined effect with vitamin D, vitamin K2, and calcium on lumbar vertebrae microarchitecture parameters of OVX rats with low calcium diet.
Figure S4. Immunohistochemistry for key proteins within the lumbar vertebra in ovx rats.
DOI: 10.17632/8tgcgvzfd3
title: Acral Lentiginous Melanoma Supplementary Table I

description: Acral Lentiginous Melanoma Supplementary Table I
DOI: 10.17632/fspdwb4mst
title: Predicting Mechanical Properties of CFRP Composites Using Data-Driven Models with Comparative Analysis

description: Experimental values of physical and mechanical properties of nine different types of CFRP composites used as the dataset in article "Predicting Mechanical Properties of CFRP Composites Using Data-Driven Models with Comparative Analysis".
DOI: 10.17632/rxt33b7sn6
title: Noise Pollution and Effectiveness of Policy Interventions for its Control in the Capital City of Nepal

description: This datasets contains the data of the study "Noise Pollution and Effectiveness of Policy Interventions for its Control in the Capital City of Nepal". This data contains noise level measurement data at different locations of Kathmandu.
DOI: 10.6084/m9.figshare.14089017.v6
title: Mouse models for hereditary spastic paraplegia uncover a role of PI4K2A in autophagic lysosome reformation

description: Hereditary spastic paraplegia (HSP) denotes genetically heterogeneous disorders characterized by leg spasticity due to degeneration of corticospinal axons. SPG11 and SPG15 have a similar clinical course and together are the most prevalent autosomal recessive HSP entity. The respective proteins play a role for macroautophagy/autophagy and autophagic lysosome reformation (ALR). Here, we report that <i>spg11</i> and <i>zfyve26</i> KO mice developed motor impairments within the same course of time. This correlated with enhanced accumulation of autofluorescent material in neurons and progressive neuron loss. In agreement with defective ALR, tubulation events were diminished in starved KO mouse embryonic fibroblasts (MEFs) and lysosomes decreased in neurons of KO brain sections. Confirming that both proteins act in the same molecular pathway, the pathologies were not aggravated upon simultaneous disruption of both. We further show that PI4K2A (phosphatidylinositol 4-kinase type 2 alpha), which phosphorylates phosphatidylinositol to phosphatidylinositol-4-phosphate (PtdIns4P), accumulated in autofluorescent deposits isolated from KO but not WT brains. Elevated PI4K2A abundance was already found at autolysosomes of neurons of presymptomatic KO mice. Immunolabelings further suggested higher levels of PtdIns4P at LAMP1-positive structures in starved KO MEFs. An increased association with LAMP1-positive structures was also observed for clathrin and DNM2/dynamin 2, which are important effectors of ALR recruited by phospholipids. Because PI4K2A overexpression impaired ALR, while its knockdown increased tubulation, we conclude that PI4K2A modulates phosphoinositide levels at autolysosomes and thus the recruitment of downstream effectors of ALR. Therefore, PI4K2A may play an important role in the pathogenesis of SPG11 and SPG15. <b>Abbreviations</b>: ALR: autophagic lysosome reformation; AP-5: adaptor protein complex 5; BFP: blue fluorescent protein; dKO: double knockout; EBSS: Earle’s balanced salt solution; FBA: foot base angle; GFP: green fluorescent protein; HSP: hereditary spastic paraplegia; KO: knockout; LAMP1: lysosomal-associated membrane protein 1; MAP1LC3B/LC3: microtubule-associated protein 1 light chain 3 beta; MEF: mouse embryonic fibroblast; SQSTM1/p62: sequestosome 1; PI4K2A: phosphatidylinositol 4-kinase type 2 alpha; PtdIns3P: phosphatidylinositol-3-phosphate; PtdIns4P: phosphatidylinositol-4-phosphate; RFP: red fluorescent protein; SPG: spastic paraplegia gene; TGN: trans-Golgi network; WT: wild type
DOI: 10.6084/m9.figshare.29048030.v1
title: Thesis

description: Homological Cryptography (HC) is a new cryptographic paradigm where topological invariants, such as nontrivial cycles in simplicial complexes, replace traditional algebraic objects as the foundation of security. Instead of relying on number theory or lattices, HC leverages the computational hardness of problems like Cycle Non-Triviality (CNT), Short Homology Representatives, and Noisy Homology Equivalence, offering native post-quantum resistance, efficient homomorphic operations, and topology-driven threshold protocols for next-generation secure systems.
DOI: 10.6084/m9.figshare.7887083.v3
title: Postal recruitment for genetic studies of preterm birth.

description: Datasets pertaining to the study: Postal recruitment for genetic studies of preterm birth: A feasibility studyFile 1. DNA extraction dataFile 2. OPPTIMUM trial dataFile 3. Questionnaire dataAppendix 1. Participant questionnaireAppendix 2. OPPTIMUM trial inclusion and exclusion criteriaAppendix 3. Recruitment pack contents
DOI: 10.17632/9v3jmt95n9
title: Supplementary data -3

description: Hyper-elastic model data
DOI: 10.17632/gf4gm82n6m
title: Numerical Regge pole analysis of resonance structures in state-to-state reactive differential cross sections

description: This is the third (and the last) code in a collection of three programs [Sokolovski et al. (2011), Akhmatskaya et al. (2014)] dedicated to the analysis of numerical data, obtained in an accurate simulation of an atom-diatom chemical reaction. Our purpose is to provide a detailed description of a FORTRAN code for complex angular momentum (CAM) analysis of the resonance effects in reactive angular scattering [for CAM analysis of integral reactive cross sections see [Akhmatskaya et al. (2014)]. The code evaluates the contributions of a Regge trajectory (or trajectories) to a differential cross section in a specified range of energies. The contribution is computed with the help of the methods described in [Dobbyn et al. (1999), Sokolovski and Msezane (2004), Sokolovski et al. (2007)]. Regge pole positions and residues are obtained by analytically continuing S-matrix element, calculated numerically for the physical integer values of the total angular momentum, into the complex angular momentum plane using the PADE_II program [Sokolovski et al. (2011)]. The code represents a reactive scattering amplitude as a sum of the components corresponding to a rapid “direct” exchange of the atom, and the various scenarios in which the reactants form long-lived intermediate complexes, able to complete several rotations before breaking up into products. The package has been successfully tested on the representative models, as well as the F + H2→ HF+H benchmark reaction. Several detailed examples are given in the text.
DOI: 10.17632/jv4ht2rvhx
title: Targeted proteomic analysis dataset of archival core human kidney biopsies to investigate the biology of hypertensive nephropathy.

description: Hypertensive nephropathy is the second most frequent cause of end-stage renal disease in western societies. In previous experiments in our laboratory with proteomic analysis of renal parenchyma of SHR hypertensive animals, we identified two molecules, namely SGLT2 and CLIC4, associated with the development of hypertension. Targeted proteomic analysis was performed using the method: "Parallel Reaction Monitoring" (PRM) in renal parenchyma of hypertensive and normotensive patients for the selective identification of SGLT2 and CLIC4 and the relative quantification of their expression. Raw files of the targeted proteomics analysis of SGLT2 and CLIC4 in human kidney biopsies from hypertensive patients and normotensive controls are deposited in this dataset. Renal tissue biopsies (N = 13) from archival material of patients with hypertensive nephropathy (N=5, designated as HT) and normotensive controls (N=8, designated as C) were used.  Our data show changes in the tubular compartment of the kidney and especially in the proximal tubules associated with the hypertensive nephropathy. Proteomics data of SGLT2 was also confirmed by immunofluorescence (raw files from the immunofluorescence validation are deposited in this dataset).  The clinical significance of these findings should be further explored for the discovery and/or confirmation of novel therapeutic approaches and biomarkers in the development of hypertensive kidney disease.

Files: PRM_13319_1C.raw, PRM_13320_2C.raw, PRM_13321_3C.raw, PRM_13322_4C.raw, PRM_13323_5C.raw, PRM_13324_6C.raw, PRM_13325_7C.raw, PRM_13326_8C.raw, correspond to the raw PRM files of the normotensive patients whereas files: PRM_13327_1HT.raw, PRM_13328_2HT.raw, PRM_13329_3HT.raw, PRM_13330_4HT.raw, PRM_13331_5HT.raw, correspond to the raw PRM files of the hypertensive patients.
In addition, files: sglt2 hyper pt1 f_ProjMax001, sglt2 hyper pt2 e_ProjMax001, sglt2 hyper pt3 c_ProjMax001, sglt2 hyper pt8 b_ProjMax001, correspond to the raw files of the immunofluorescence images of the hypertensive patients and files: sglt2 norm pt1_g_ProjMax001, sglt2 norm pt3 a_ProjMax001, sglt2 norm pt4 b_ProjMax001, sglt2 norm pt5_a_ProjMax001, correspond to the raw files of the immunofluorescence images of the normotensive patients.
DOI: 10.6084/m9.figshare.5401519.v2
title: FPS analysis - input - structure subunits

description: These pdb files include the atomic coordinates of the template strand (first file), the nontemplate strand (second file) and the RNAP holoenzyme (third file).These files are used for the docking on top of the 4XLN pdb file using the FRET-derived D-A distance constraints.
DOI: 10.26188/5da558e47158f
title: EPiC database - Water-based paint

description: This material is part of the free Environmental Performance in Construction (EPiC) Database. The EPiC Database contains embodied environmental flow coefficients for 250+ construction materials using a comprehensive hybrid life cycle inventory approach.<br><br>Paint is used to protect surfaces from moisture, UV and wear. It can protective coating for timber, metals, plastics and plaster products. There are two main types of paint: water-based paint (including waterborne acrylics, and acrylic latex paints) and solvent-based paint (also known as alkyd or oil-based enamel paints).<br><br>Paint is produced by combining resin, solvents, pigment, and additives. Resins are used to bind together the ingredients. For water-based paint these include: poly vinyl acetate, butyl methacrylate and methyl. Solvents such as water and mineral turpentine are used to dilute and thin the paint. Pigments are added to create colour and sheen, and can include calcium carbonate, talc, oxides and mica amongst others. Other additives are included to reduce drying time and give the paint particular properties. <br><br>Water-based paints have several advantages over oil-based alternatives. They are excellent for external applications, and have high tolerance to UV. They have a low odour, are easy to clean, and are less hazardous to dispose of. They also have better flexibility, dry faster, and are generally more environmentally friendly due to the low amounts of volatile organic compounds (VOCs), which are commonly found in solvent-based paints. Paints with high levels of VOCs are toxic to the environment, have a harsh odour and can be dangerous to inhale.
DOI: 10.17632/78ntrfdbvs
title: S@M, a mathematica implementation of the spinor-helicity formalism

description: Abstract In this paper we present the package S@M (Spinors@Mathematica) which implements the spinor-helicity formalism in Mathematica. The package allows the use of complex-spinor algebra along with the multi-purpose features of Mathematica. The package defines the spinor objects with their basic properties along with functions to manipulate them. It also offers the possibility of evaluating the spinorial objects numerically at every computational step. The package is therefore well suited to be used ... Title of program: S@M Catalogue Id: AEBF_v1_0 Nature of problem Implementation of the spinor-helicity formalism Versions of this program held in the CPC repository in Mendeley Data AEBF_v1_0; S@M; 10.1016/j.cpc.2008.05.002 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/n8xv5j3md3
title: Data for: Multiple-globe thermometer for measuring the air temperature without an aspirated radiation shield

description: This dataset is the original data of the field experiment conducted in the paper “Multiple-globe thermometer for measuring the air temperature without an aspirated radiation shield” by Maruyama. The dataset includes meteorological data of the weather station in the Yawara rice field, temperature data of the standard thermometer, and temperature data of the developed thermometer. The temperature data of the developed thermometer include temperatures of the five globes with different diameters of 0.25, 0.5, 1, 2 and 4 mm. The diameter of the smallest globe in this experiment slightly deviated from 0.25 mm owing to the hand-processing of thermocouples, and the actual diameter was 0.28 mm. Ten-minute data are average values of the temperature measured every 10 s for 10 min. One-minute data are raw values of the temperature sampled every 1 min. One-hour data are the meteorological data of the weather station. A calculation sample containing exact formula and simple formula for obtaining the air temperature by the five-globe thermometer and three-globe thermometer are also included. Symbols in the dataset denote the following elements. Tair: Air temperature observed at the weather station (°C) RH: Relative humidity observed at the weather station (%) U: Wind speed observed at the weather station (m/s) Rs: Solar radiation observed at the weather station (W/m2) STD: Air temperature observed using a standard thermometer (°C) T1: Temperature of the globe with a 0.25-mm diameter (°C) T2: Temperature of the globe with a 0.5-mm diameter (°C) T3: Temperature of the globe with a 1-mm diameter (°C) T4: Temperature of the globe with a 2-mm diameter (°C) T5: Temperature of the globe with a 4-mm diameter (°C) 5GT: Air temperature obtained by the five-globe thermometer (°C) 3GT: Air temperature obtained by the three-globe thermometer (°C) 5GTs: Air temperature obtained by the five-globe thermometer using simple formula (°C) 3GTs: Air temperature obtained by the three-globe thermometer using simple formula (°C) Simple formulas are based on the Eq. (5) in the paper, and the air temperature Ta can be calculated as Ta = 0.6907 T1 + 0.5279 T2 + 0.2977 T3 - 0.0279 T4 - 0.4884 T5, (for the five-globe thermometer) Ta = T1 + 0.5 (T3 - T5), (for the three-globe thermometer)
DOI: 10.17632/wg6v2v5yrg
title: Dataset of P- and S-wave Velocity Structures in Japan

description: This dataset includes mainly P- and S-wave velocity structures derived using diffuse field concept for earthquakes at 1744 K-NET and KiK-net sites. Additionally, we include the peak fundamental and predominant frequencies and the associated correlation coefficients and residuals between the observed and theoretical horizontal-to-vertical spectral ratios for earthquakes. This dataset could be used to detect the effective bedrock depths, as well as to estimate the site amplification factors.
DOI: 10.6084/m9.figshare.8259134.v3
title: SMSNet's predictions for HLA peptidome and human phosphoproteome datasets

description: SMSNet's predicted amino acid sequences for a public HLA peptidome dataset (MassIVE accession MSV000080527) and human phosphoproteome dataset (PRIDE accession PXD009227). For the human phosphoproteome dataset, both SMSNet's original output and the evidence output from MaxQuant after re-searching with additional peptides from SMSNet are provided.
DOI: 10.17632/pwkgyshw4s
title: Comparative dataset on productivity, proximate, biochemical and pigment content of marine Gonyostomum sp. and freshwater Tetraedron sp. microalgae

description: The dataset includes a comparative analysis of Gonyostomum sp. and Tetraedron sp. to characterize their productivity, proximate composition, biochemical composition and pigments. 
Table 1. Growth and Productivity Parameters of Gonyostomum sp. and Tetraedron sp.
Table 2. Fatty acids content (% fatty acids) of Gonyostomum sp. and Tetraedron sp.
Table 3. Amino acid content (% amino acids) of Gonyostomum sp. and Tetraedron sp.
Table 4. Pigment Contents of Gonyostomum sp. and Tetraedron sp.
Figure 2. Growth phases of Gonyostomum sp. and Tetraedron sp.
Figure 3. Proximate composition of Gonyostomum sp. and Tetraedron sp.
DOI: 10.17632/rtgdj2jmk6
title: Identifying agricultural frontiers for modelling global cropland expansion - code and data
DOI: 10.6084/m9.figshare.11316725.v1
title: MECP2 EVA genetic variant data in CSV

description: MECP2 genetic variant data from EVA in CSV format.<br>FAIR machine-readable metadata is available at:http://purl.org/biosemantics-lumc/rettbase/fdp<br>
DOI: 10.6084/m9.figshare.25901398.v1
title: <i>Base de datos y Zotero - Ciberseguridad en Organizaciones </i>

description: El estudio de la ciberseguridad en las diferentes organizaciones
DOI: 10.17605/osf.io/avu9e
title: Possibilidades de uso em linguística forense de bancos de dados brasileiros de língua e fala

description: Repositório para arquivos relacionados à pesquisa "Possibilidades de uso em linguística forense de bancos de dados brasileiros de língua e fala".
DOI: 10.17632/9t8kckdhmc
title: How does ESG affect government procurement in countries where ESG systems are established from the top down?

description: code and data
DOI: 10.17632/b3h99pwybf
title: The expert-level distinction of systemic sclerosis from hand photographs using the deep convolutional neural network

description: Supplement Table 1. The diseases types of patients included in this study. Supplement Figure 1. Photography equipment and hand photographs. Photographs of the patient's hands were taken using the imaging equipment set up in the room dedicated to photography, with a constant light source, camera settings, and distance between the hand and camera (A). We took four hand photographs: palms of right hands (B), palms of left hands (C), dorsum of right hands (D), and dorsum of left hands (E) by each patient. Photographs of representative SSc patients were shown. Supplement Figure 2. The architecture of the CNN. The architecture of the CNN developed in this study was shown. The CNN was built in an Nvidia V100 environment, using Tensorflow 1.13.2 and Keras 2.2.4 as frameworks. Each of palm and dorsal of hand photographs obtained from the patients was randomly and evenly divided into four groups. Three of these groups were used to build and train the CNN. The remaining one group was used to compare the SSc distinction performance of SSc specialists with the CNN after training. SSc patient's photos LSc patient's photos SLE patient's photos DM patient's photos Vasculitis patient's photos Early SSc patient's photos Healthy Control's photos
DOI: 10.17632/j68z4wwbp7
title: A study of Single-Cell RNA Sequencing Analysis Reveals Sequential Cell Fate Transition during Human Spermatogenesis. Wang et al

description: (1A) Immunofluorescence of FGFR3 (red) co-stained with DDX4, UTF1, KIT, or STRA8 (green) in adult human testicular paraffin sections from one donor with OA. Triangles indicate SSCs; yellow arrowheads indicate Diff.ing SPG; arrows indicate Diff.ed SPG. SSC, spermatogonial stem cells; Diff.ing SPG, differentiating spermatogonia; Diff.ed SPG, differentiated spermatogonia. Scale bar, 10 μm. (1B) Immunofluorescence of BMPR1B (red) co-stained with DDX4, UTF1, KIT, or STRA8 (green) in adult human testicular paraffin sections from one donor with OA. Triangles indicate SSCs; yellow arrowheads indicate Diff.ing SPG; arrows indicate Diff.ed SPG. SSC, spermatogonial stem cells; Diff.ing SPG, differentiating spermatogonia; Diff.ed SPG, differentiated spermatogonia. Scale bar, 10 μm. (2A) Immunofluorescence of DMC1 and γH2AX (red) co-stained with SYCP3 (green) in adult human testicular paraffin sections from one donor with OA. Triangles indicate leptotene (L) spermatocytes; yellow arrowheads indicate zygotene (Z) spermatocytes; arrows indicate pachytene (P) spermatocytes. Scale bar, 10 μm. (2B) Boxplot showing the relative expression levels (average TPM) of sex chromosome genes versus autosomes (Chr1, Chr3 to Chr5, Chr7 to Chr10, Chr12 to Chr19, Chr21 to Chr22) in each cluster. (3A) Immunofluorescence of TNP1 (green) co-stained with γH2AX (red) and PNA (pink) in adult human testicular paraffin sections from one donor with OA. Triangles indicate γH2AX+ spermatids. Scale bar, 10 μm. (3B) Immunofluorescence of TNP1, PRM1, H4K16AC, KAT8 and CHD5 (green) co-stained with DDX4 (red) and PNA (pink) in adult human testicular paraffin sections from one donor with OA respectively. Triangles indicate S1; yellow arrowheads indicate S2; arrows indicate S3. S, spermatids. Scale bar, 10 μm. (4A) Enriched GO terms and P values of 2,821 human-mouse homologous DEGs in four categories of adult human testicular cells. SPG, spermatogonia; SPC, spermatocytes; S, spermatids. (4B) Enriched GO terms and P values (P value &lt; 0.05) of 1,710 widely expressed human-mouse homologous genes in testicular cells. (4C) Enriched GO terms and P values (P value &lt; 0.05) of 998 widely expressed human-mouse non-homologous genes in testicular cells. (4D) Enriched GO terms and P values of 1,158 non-housekeeping (also non-homologous) DEGs in four categories of adult human testicular cells. SPG, spermatogonia; SPC, spermatocytes; S, spermatids.
DOI: 10.6084/m9.figshare.12815750.v2
title: Pure sea water absorption and scattering

description: Absorption coefficients in 250-550nm range are updated according to Mason et al. 2016. 250-550 nm: Mason et al. 2016. Appl. Optics 55(25), 7163-7172.555-725 nm: R.M. Pope and E.S. Fry, 1997. Appl. Optics 36(33), 8710-8723. 725-800 nm: R.C. Smith and K. Baker, 1981. Appl. Optics 20(2), 177-184.800-2000nm: D. Segelstein, 1981. "The Complex Refrac. Index of Water", M.S. Thesis, U. MissouriMeasured absorption data were spline fit and resampled to 5 nm resolution.Scattering coefs were computed from A. Morel, 1974. "Optical Aspects Oceanogr.," Chap 1 (L&WEq. 3.31)
DOI: 10.6084/m9.figshare.22795838.v1
title: CMI HCs

description: EEG source space connectivity matrices of healthy controls computed with conditional mutual information (CMI)