cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.18739/a2682j
title: Photogrammetric scans of aerial photographs of North American glaciers, 1993. Roll 2 tiffs
DOI: 10.18739/a2fr7f
title: Black Rapids Glacier time-lapse photos, Eastern Alaska Range, 2012-2013
DOI: 10.5066/f7v123pp
title: Bathymetry on the Rolling Fork near Boston, Kentucky, April 4-5, 2017

description: These data are bathymetry (river bottom elevation) in XYZ format, generated from the April 4-5, 2017, bathymetric survey of the Rolling Fork and Beech Fork near Boston, Kentucky. The bathymetry was collected from approximately 1.9 miles upstream from Kentucky State Highway 62 on the Beech Fork and approximately 1.5 miles upstream from Kentucky State Highway 62 on the Rolling Fork, to 2.6 miles downstream from Kentucky State Highway 62 on the Rolling Fork. Hydrographic data were collected using an acoustic Doppler current profiler (ADCP) with integrated Differential Global Positioning System (DGPS). Data were collected as the surveying vessel traversed the river, approximately perpendicular to the velocity vectors at 70 cross sections which were spaced approximately 500 feet apart along the river. Data collection software integrated and stored the depth and DGPS data from the ADCP. Real-time kinematic GPS was collected recording the water-surface elevation. Data processing required computer software to extract bathymetry data from the raw data files and to compile the information. The final csv file contains columns of Easting and Northing in meters WGS84 - UTM Zone 16N, and Elevation in feet NAVD88.
DOI: 10.18739/a29546
title: Photogrammetric scans of aerial photographs of North American glaciers, 1993. Roll 2 tiffs
DOI: 10.18739/a2b25v
title: Black Rapids Glacier mass balance, Eastern Alaska Range, 1972-2016
DOI: 10.18739/a2s836
title: thule_plot_flux_2013.csv
DOI: 10.18739/a2v25h
title: thule_tram_soil_temps_2013.csv
DOI: 10.18739/a2xr7s
title: Photogrammetric scans of aerial photographs of North American glaciers, 1993. Roll 2 jpegs
DOI: 10.14469/hpc/3097
title: Rb2 (2-) triplet

description: Gaussian Calculation
DOI: 10.14469/hpc/3098
title: K2 (2-) triplet

description: Gaussian Calculation
DOI: 10.18739/a2cv7v
title: Warming and drying effects on tundra carbon balance (DryPEHR)
DOI: 10.18739/a2nc2m
title: Photogrammetric scans of aerial photographs of North American glaciers, 1993. Roll 1 thumbnails
DOI: 10.18739/a23c31
title: S01FEB13A
DOI: 10.18739/a24c3b
title: Warming and drying effects on tundra carbon balance (DryPEHR)
DOI: 10.18739/a2824v
title: Warming and drying effects on tundra carbon balance (DryPEHR)
DOI: 10.18739/a2hk0p
title: Photogrammetric scans of North American Glacier Aerial Photographs, 1991. Roll 1 thumbnails
DOI: 10.18739/a2s25w
title: Photogrammetric scans of aerial photographs of North American glaciers, 1993. Roll 4 jpegs
DOI: 10.5066/f7j964k7
title: ADCP data from rivers in Alaska, September 18-20, 2016

description: The U.S. Geological Survey obtained measurements of channel geometry, flow velocity, and river discharge from five rivers in Alaska September 18-20, 2016, to support research on remote sensing of river discharge. The streamflow data were acquired from the Knik, Matanuska, Chena, and Salcha Rivers and Montana Creek using TeleDyne RD Acoustic Doppler Current Profilers (ADCPs), including the RioPro, StreamPro, and RiverRay models. The original *.mmt and *.pd0 format files are provided in this data release. These ADCP data sets were used to provide information on channel geometry and to assess the accuracy of surface flow velocities, water depths, and river discharges based on thermal image time series acquired from bridges above each river. The goal of this project was to assess the feasibility of measuring river discharge from remotely sensed data.
DOI: 10.5281/zenodo.15208197
title: Emergent Ferromagnetism at LaFeO3/SrTiO3 Interface Arising from a Strain-induced Spin-State Transition

description: EELS. STEM image. DFT. Magnetism
DOI: 10.5281/zenodo.15208198
title: Emergent Ferromagnetism at LaFeO3/SrTiO3 Interface Arising from a Strain-induced Spin-State Transition

description: EELS. STEM image. DFT. Magnetism
DOI: 10.6084/m9.figshare.23827526
title: Supplementary Material C: Pairwise differences in bill shape and size between species. from Intrinsic & extrinsic drivers of shape variation in the Albatross compound bill

description: Pairwise differences in bill shape and size between species. Upper half gives p-values from 1000 permutations in species assignment, with bold indicating significance. Lower half gives distance between species means.
DOI: 10.6084/m9.figshare.23827526.v1
title: Supplementary Material C: Pairwise differences in bill shape and size between species. from Intrinsic & extrinsic drivers of shape variation in the Albatross compound bill

description: Pairwise differences in bill shape and size between species. Upper half gives p-values from 1000 permutations in species assignment, with bold indicating significance. Lower half gives distance between species means.
DOI: 10.6084/m9.figshare.23827529
title: Supplementary Material A - Classifiers & Covariates from Intrinsic & extrinsic drivers of shape variation in the Albatross compound bill

description: Classifiers and Covariates for each albatross individual.
DOI: 10.6084/m9.figshare.23827529.v1
title: Supplementary Material A - Classifiers & Covariates from Intrinsic & extrinsic drivers of shape variation in the Albatross compound bill

description: Classifiers and Covariates for each albatross individual.
DOI: 10.6084/m9.figshare.23827532.v1
title: Supplementary Material E: eBird Range Maps for Wandering, Sooty and Light-mantled Albatross. from Intrinsic & extrinsic drivers of shape variation in the Albatross compound bill

description: eBird Range Maps for Wandering, Sooty and Light-mantled Albatross.
DOI: 10.6084/m9.figshare.23827532
title: Supplementary Material E: eBird Range Maps for Wandering, Sooty and Light-mantled Albatross. from Intrinsic & extrinsic drivers of shape variation in the Albatross compound bill

description: eBird Range Maps for Wandering, Sooty and Light-mantled Albatross.
DOI: 10.6084/m9.figshare.23812830.v28
title: Development of global monthly dataset of CMIP6 climate variables for estimating evapotranspiratio

description: Regridding Global CMIP6 GCMs dataset(0.5 degree)Historical dataset:14 CMIP6 GCMs (1850-2014)Future dataset: 14CMIP6 GCMs and 4 SSP scenarios (2015-2100)Composition of dataset: Average temperature, Maximum temperature, Minimum temperature, Windspeed, Relative humidity, Solar radiationIf you are using our codes and dataset, please use the following references:Song, Y.H., Chung, E.S., Shahid, S., Kim, Y.J., Kim, D.K. 2023. Development of global monthly dataset of CMIP6 climate variables for estimating evapotranspiration. Scientific Data.<br>
DOI: 10.6084/m9.figshare.23827617
title: Zheng-Supplementary Information (Source Data)2023.08.03.pptx

description: Coxsackievirus B3 (CVB3)-induced acute heart failure (AHF) is a common cause of cardiogenic death in young and middle-aged people. However, the key molecular events linking CVB3 to AHF remain largely unknown, resulting in a lack of targeted therapy strategies thus far. Here, we unexpectedly found that Viperin deficiency does not promote CVB3 infection but protects mice from CVB3-induced AHF. Importantly, cardiac-specific expression of Viperin can induce cardiac dysfunction. Mechanistically, CVB3-3C protease rescues Viperin protein expression in cardiomyocytes by lowering UBE4A. Viperin in turn recruits and reduces STAT1 to activate SGK1-KCNQ1 signaling, which leads to cardiac electrical dysfunction and subsequent AHF. Furthermore, we designed an interfering peptide VS-IP1, which blocked Viperin-mediated STAT1 degradation and restricted CVB3-induced AHF. This study established the first link between Viperin-STAT1 innate immune signaling and cardiac electrical dysfunction, and revealed the potential of interfering peptides targeting Viperin for the treatment of CVB3-induced AHF.
DOI: 10.6084/m9.figshare.23827617.v1
title: Zheng-Supplementary Information (Source Data)2023.08.03.pptx

description: Coxsackievirus B3 (CVB3)-induced acute heart failure (AHF) is a common cause of cardiogenic death in young and middle-aged people. However, the key molecular events linking CVB3 to AHF remain largely unknown, resulting in a lack of targeted therapy strategies thus far. Here, we unexpectedly found that Viperin deficiency does not promote CVB3 infection but protects mice from CVB3-induced AHF. Importantly, cardiac-specific expression of Viperin can induce cardiac dysfunction. Mechanistically, CVB3-3C protease rescues Viperin protein expression in cardiomyocytes by lowering UBE4A. Viperin in turn recruits and reduces STAT1 to activate SGK1-KCNQ1 signaling, which leads to cardiac electrical dysfunction and subsequent AHF. Furthermore, we designed an interfering peptide VS-IP1, which blocked Viperin-mediated STAT1 degradation and restricted CVB3-induced AHF. This study established the first link between Viperin-STAT1 innate immune signaling and cardiac electrical dysfunction, and revealed the potential of interfering peptides targeting Viperin for the treatment of CVB3-induced AHF.
DOI: 10.5519/qd.44cdtpzx
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1001 records)
DOI: 10.6084/m9.figshare.23827695
title: Cellmorphology_Alldata.csv

description: These are the raw data of cell wall thickness, cell area, and proportion of cell walls of wood fibers in the secondary xylem of <i>B. maximowicziana</i> trunks taken from Naie and Furano in central Hokkaido.
DOI: 10.6084/m9.figshare.23827695.v1
title: Cellmorphology_Alldata.csv

description: These are the raw data of cell wall thickness, cell area, and proportion of cell walls of wood fibers in the secondary xylem of <i>B. maximowicziana</i> trunks taken from Naie and Furano in central Hokkaido.
DOI: 10.26036/cnp0004631
title: WASH deficiency mice and B cell function regulation

description: We utilized conditional deletion of WASH in B cell (KO) mice to explore whether BCR signaling or related biological functions would be affected by WASH deficiency and attempt to elucidate the molecular mechanisms.
DOI: 10.6084/m9.figshare.23827842
title: Supplementary Material for: A heterozygous variant of FGF13 caused X-linked developmental and epileptic encephalopathy 90 in a Chinese family

description: Developmental and epileptic encephalopathy (DEE) refers to a group of severe epilepsy encephalopathy and development disorders, and its typical clinical features include seizures, drug resistance, and developmental delay or regression. To date, limited studies have reported DEEs driven by FGF13. Here, we reported a girl with DEE90 caused by variant of FGF13. Her electroencephalography (EEG) showed discontinuous hypsarrhythmia, and a heterozygous nonsynonymous variant in FGF13 [NM_004114.4: c.5C&gt;G, p.(Ala2Gly)] was identified from the proband. The variant was not reported in public databases such as gnomAD and Exome Aggregation Consortium (ExAC), and predicted to be damaging to proteins and classified as likely pathogenic (LP) according to the ACMG guidelines. The seizure was finally controlled by a combination of ACTH + zonisamide (10 mg/kg.d) + levetiracetam (52 mg/kg.d) + clonazepam (0.7 mg/kg.d).
DOI: 10.6084/m9.figshare.23827848
title: Supplementary Material for: Auditory-Perceptual Assessments of Cough: Characterizing Rater Reliability and the Effects of a Standardized Training Protocol

description: Introduction: Auditory-perceptual assessments of cough are commonly used by speech-language pathologists working with people with swallowing disorders with emerging evidence beginning to demonstrate their validity, however their reliability amongst novice clinicians is unknown. Therefore, the primary aim of this study was to characterize the reliability of auditory-perceptual assessments of cough amongst a group of novice clinicians. As a secondary aim, we assessed the effects of a standardized training protocol on the reliability of auditory-perceptual assessments of cough. Methods: 12 novice clinicians blindly rated ten auditory-perceptual cough descriptors for 120 cough audio clips. Standardized training was then completed by the group of clinicians. The same cough audio clips were then re-randomized and blindly rated. Reliability was analyzed pre- and post-training within each clinician (intra-rater), between each unique pair of raters (dyad-level inter-rater), and for the entire group of raters (group-level inter-rater) using intraclass correlation coefficients and Cohen’s Kappa. Results: Pre-training reliability was greatest for measures of strength, effectiveness, and normality, and lowest when judging the type of expiratory maneuver (cough, throat clear, huff, other). The measures that improved the most with training were ratings of perceived crispness, amount of voicing, and type of expiratory maneuver. Intra-rater reliability coefficients ranged from .580-.903 pre-training and .756-.904 post-training. Dyad-level inter-rater reliability coefficients ranged from .295-.745 pre-training and .450-.804 post-training. Group-level inter-rater reliability coefficients ranged from .454-.919 pre-training and .558-.948 post-training. Discussion/Conclusion: Reliability of auditory-perceptual assessments varied across perceptual cough descriptors, but all appeared within the range of what has been historically reported for auditory-perceptual assessments of voice and visual-perceptual assessments of swallowing and cough airflow. Reliability improved for most cough descriptors following 30-60 minutes of standardized training. Future research is needed to examine the validity of auditory-perceptual assessments of cough by assessing the relationship between perceptual cough descriptors with instrumental measures of cough effectiveness to better understand the role of perceptual assessments in clinical practice.
DOI: 10.6084/m9.figshare.23827848.v1
title: Supplementary Material for: Auditory-Perceptual Assessments of Cough: Characterizing Rater Reliability and the Effects of a Standardized Training Protocol

description: Introduction: Auditory-perceptual assessments of cough are commonly used by speech-language pathologists working with people with swallowing disorders with emerging evidence beginning to demonstrate their validity, however their reliability amongst novice clinicians is unknown. Therefore, the primary aim of this study was to characterize the reliability of auditory-perceptual assessments of cough amongst a group of novice clinicians. As a secondary aim, we assessed the effects of a standardized training protocol on the reliability of auditory-perceptual assessments of cough. Methods: 12 novice clinicians blindly rated ten auditory-perceptual cough descriptors for 120 cough audio clips. Standardized training was then completed by the group of clinicians. The same cough audio clips were then re-randomized and blindly rated. Reliability was analyzed pre- and post-training within each clinician (intra-rater), between each unique pair of raters (dyad-level inter-rater), and for the entire group of raters (group-level inter-rater) using intraclass correlation coefficients and Cohen’s Kappa. Results: Pre-training reliability was greatest for measures of strength, effectiveness, and normality, and lowest when judging the type of expiratory maneuver (cough, throat clear, huff, other). The measures that improved the most with training were ratings of perceived crispness, amount of voicing, and type of expiratory maneuver. Intra-rater reliability coefficients ranged from .580-.903 pre-training and .756-.904 post-training. Dyad-level inter-rater reliability coefficients ranged from .295-.745 pre-training and .450-.804 post-training. Group-level inter-rater reliability coefficients ranged from .454-.919 pre-training and .558-.948 post-training. Discussion/Conclusion: Reliability of auditory-perceptual assessments varied across perceptual cough descriptors, but all appeared within the range of what has been historically reported for auditory-perceptual assessments of voice and visual-perceptual assessments of swallowing and cough airflow. Reliability improved for most cough descriptors following 30-60 minutes of standardized training. Future research is needed to examine the validity of auditory-perceptual assessments of cough by assessing the relationship between perceptual cough descriptors with instrumental measures of cough effectiveness to better understand the role of perceptual assessments in clinical practice.
DOI: 10.25345/c5wm14432
title: MassIVE MSV000092577 - A novel mechanism for Rhs effector delivery via the type VI secretion system
title: The type VI secretion system (T6SS) is a molecular machine utilised by many Gram-negative bacteria to deliver antibacterial toxins directly into adjacent bacteria, often providing them with a competitive advantage. Rearrangement hotspot (Rhs) effectors are known T6SS cargo effectors, but the precise delivery and activation of these toxins is poorly defined. We present the structure of a novel T6SS Rhs effector (Tse15) from the opportunistic pathogen A. baumannii. Tse15 forms a triple layered-barrel Rhs domain, an N-terminal-helical clade domain and a C-terminal toxin domain partially unfolded inside the Rhs barrel. We show Tse15 auto-cleaves into three domains, where aspartyl protease activity is required for toxin self-cleavage and the N-terminal domain self-cleaves with a proximal glutamic acid required for autocleavage. Proteomic analyses showed that the N-terminal clade and toxin domains, but not thebarrel Rhs domain, are delivered outside of the cell, suggesting a novel mechanism for Rhs toxin delivery and activation.
DOI: 10.6084/m9.figshare.23827866
title: Supplementary Material for: A heterozygous variant of FGF13 caused X-linked developmental and epileptic encephalopathy 90 in a Chinese family

description: Developmental and epileptic encephalopathy (DEE) refers to a group of severe epilepsy encephalopathy and development disorders, and its typical clinical features include seizures, drug resistance, and developmental delay or regression. To date, limited studies have reported DEEs driven by FGF13. Here, we reported a girl with DEE90 caused by variant of FGF13. Her electroencephalography (EEG) showed discontinuous hypsarrhythmia, and a heterozygous nonsynonymous variant in FGF13 [NM_004114.4: c.5C&gt;G, p.(Ala2Gly)] was identified from the proband. The variant was not reported in public databases such as gnomAD and Exome Aggregation Consortium (ExAC), and predicted to be damaging to proteins and classified as likely pathogenic (LP) according to the ACMG guidelines. The seizure was finally controlled by a combination of ACTH + zonisamide (10 mg/kg.d) + levetiracetam (52 mg/kg.d) + clonazepam (0.7 mg/kg.d).
DOI: 10.6084/m9.figshare.23827866.v1
title: Supplementary Material for: A heterozygous variant of FGF13 caused X-linked developmental and epileptic encephalopathy 90 in a Chinese family

description: Developmental and epileptic encephalopathy (DEE) refers to a group of severe epilepsy encephalopathy and development disorders, and its typical clinical features include seizures, drug resistance, and developmental delay or regression. To date, limited studies have reported DEEs driven by FGF13. Here, we reported a girl with DEE90 caused by variant of FGF13. Her electroencephalography (EEG) showed discontinuous hypsarrhythmia, and a heterozygous nonsynonymous variant in FGF13 [NM_004114.4: c.5C&gt;G, p.(Ala2Gly)] was identified from the proband. The variant was not reported in public databases such as gnomAD and Exome Aggregation Consortium (ExAC), and predicted to be damaging to proteins and classified as likely pathogenic (LP) according to the ACMG guidelines. The seizure was finally controlled by a combination of ACTH + zonisamide (10 mg/kg.d) + levetiracetam (52 mg/kg.d) + clonazepam (0.7 mg/kg.d).
DOI: 10.6084/m9.figshare.23827882
title: Emergence of swine influenza A virus, porcine respirovirus 1 and swine orthopneumovirus in porcine respiratory disease in Germany

description: Respiratory disease is a significant economic issue in pig farming, with a complex aetiology that includes swine influenza A viruses (swIAV), which are common in European domestic pig populations. The most recent human influenza pandemic in 2009 showed swIAV’s zoonotic potential. Monitoring pathogens and disease control are critical from a preventive standpoint, and are based on quick, sensitive, and specific diagnostic assays capable of detecting and distinguishing currently circulating swIAV in clinical samples. For passive surveillance, a set of multiplex quantitative reverse transcription real-time PCRs (mRT-qPCR) and MinION-directed sequencing was updated and deployed. Several lineages and genotypes of swIAV were shown to be dynamically developing, including novel reassortants between human pandemic H1N1 and the avian-derived H1 lineage of swIAV. Despite this, nearly 70% (842/1216) of individual samples from pigs with respiratory symptoms were swIAV-negative, hinting to different aetiologies. The complex and synergistic interactions of swIAV infections with other viral and bacterial infectious agents contribute to the aggravation of pig respiratory diseases. Using a newly developed mRT-qPCR for the combined detection of swIAV and the recently described porcine respirovirus 1 (PRV1) and swine orthopneumovirus (SOV) widespread co-circulation of PRV1 (19.6%, 238/1216 samples) and SOV (14.2%, 173/1216 samples) was evident. Because of the high incidence of PRV1 and SOV infections in pigs with respiratory disease, these viruses may emerge as new allies in the porcine respiratory disease syndrome.
DOI: 10.6084/m9.figshare.23827882.v1
title: Emergence of swine influenza A virus, porcine respirovirus 1 and swine orthopneumovirus in porcine respiratory disease in Germany

description: Respiratory disease is a significant economic issue in pig farming, with a complex aetiology that includes swine influenza A viruses (swIAV), which are common in European domestic pig populations. The most recent human influenza pandemic in 2009 showed swIAV’s zoonotic potential. Monitoring pathogens and disease control are critical from a preventive standpoint, and are based on quick, sensitive, and specific diagnostic assays capable of detecting and distinguishing currently circulating swIAV in clinical samples. For passive surveillance, a set of multiplex quantitative reverse transcription real-time PCRs (mRT-qPCR) and MinION-directed sequencing was updated and deployed. Several lineages and genotypes of swIAV were shown to be dynamically developing, including novel reassortants between human pandemic H1N1 and the avian-derived H1 lineage of swIAV. Despite this, nearly 70% (842/1216) of individual samples from pigs with respiratory symptoms were swIAV-negative, hinting to different aetiologies. The complex and synergistic interactions of swIAV infections with other viral and bacterial infectious agents contribute to the aggravation of pig respiratory diseases. Using a newly developed mRT-qPCR for the combined detection of swIAV and the recently described porcine respirovirus 1 (PRV1) and swine orthopneumovirus (SOV) widespread co-circulation of PRV1 (19.6%, 238/1216 samples) and SOV (14.2%, 173/1216 samples) was evident. Because of the high incidence of PRV1 and SOV infections in pigs with respiratory disease, these viruses may emerge as new allies in the porcine respiratory disease syndrome.
DOI: 10.6084/m9.figshare.23827851
title: Rscript_All cell data.R

description: These are the R script to analyze the changes in cell morphology between normal tree rings and white rings in <i>Betula maximowicziana</i> taken from Naie and Furano in central Hokkaido.
DOI: 10.6084/m9.figshare.23827851.v1
title: Rscript_All cell data.R

description: These are the R script to analyze the changes in cell morphology between normal tree rings and white rings in <i>Betula maximowicziana</i> taken from Naie and Furano in central Hokkaido.