cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16915294.v4
title: Tiger Woods Sentiment Dataset

description: Dataset containing data on Tiger Woods
DOI: 10.6084/m9.figshare.28716005.v1
title: <b>PRRSV evades innate immune cGAS-STING antiviral function via its Nsp5 to deter STING translocation and activation</b>

description: Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) is an important pathogen that seriously endangers pig breeding, causing significant economic losses to the global swine industry. Our previous study found that the DNA sensing innate cGAS-STING signaling pathway plays an important role in inducing interferon (IFN) upon PRRSV infection and inhibition of PRRSV replication. However, the immune evasion and its mechanism by PRRSV is still unclear. In current study, we found that PRRSV Non-structural protein 5 (Nsp5) strongly inhibits the cGAS-STING-IFN antiviral response. Further, we found that Nsp5 interacts with STING, blocking STING transport from ER to Golgi apparatus and interfering with STING recruitment of TBK1/IKKε/IRF3. Finally, we demonstrated that the Nsp5 36-47 and 58-67 amino acid regions are critical regions for inhibiting STING activity and PRRSV replication. The study describes a novel mechanism by PRRSV for suppression of the host innate antiviral response and have implications for our understanding of PRRSV pathogenesis.
DOI: 10.15468/dl.bf8fsc
title: Occurrence Download

description: A dataset containing 5594 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Nebria brevicollis (Fabricius, 1792)"
 ]
}

 The dataset includes 5594 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009634-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.13010387.v1
title: Cellular Network Measurements for Symbolic Indoor Positioning

description: For a description of the dataset please refer to our paper "<i>Deep Learning-based Symbolic Indoor Positioning using the Serving eNodeB</i>".
DOI: 10.6084/m9.figshare.17067284
title: Supplementary Material for: Mycobacteriophages to Treat Tuberculosis: Dream or Delusion?

description: Rates of antimicrobial resistance are increasing globally while the pipeline of new antibiotics is drying up, putting patients with disease caused by drug-resistant bacteria at increased risk of complications and death. The growing costs for diagnosis and management of drug resistance threaten tuberculosis control where the disease is endemic and resources limited. Bacteriophages are viruses that attack bacteria. Phage preparations served as anti-infective agents long before antibiotics were discovered. Though small in size, phages are the most abundant and diverse biological entity on earth. Phages have co-evolved with their hosts and possess all the tools needed to infect and kill bacteria, independent of drug resistance. Modern biotechnology has improved our understanding of the biology of phages and their possible uses. Phage preparations are available to treat meat, fruit, vegetables, and dairy products against parasites or to prevent contamination with human pathogens, such as <i>Listeria monocytogenes, Escherichia coli</i>, or <i>Staphylococcus aureus</i>. Such phage-treated products are considered fit for human consumption. A number of recent case reports describe in great detail the successful treatment of highly drug-resistant infections with individualized phage preparations. Formal clinical trials with standardized products are slowly emerging. With its highly conserved genome and relative paucity of natural phage defence mechanisms <i>Mycobacterium tuberculosis</i> appears to be a suitable target for phage treatment. A phage cocktail with diverse and strictly lytic phages that kill all lineages of <i>M. tuberculosis,</i> and can be propagated on <i>Mycobacterium smegmatis</i>, has been assembled and is available for the evaluation of optimal dosage and suitable routes of administration for tuberculosis in humans. Phage treatment can be expected to be safe and active on extracellular organisms, but phage penetration to intracellular and granulomatous environments as well as synergistic effects with antibiotics are important questions to address during further evaluation.
DOI: 10.6084/m9.figshare.1004464.v6
title: Crassostrea gigas male gonad transcriptome data comparison

description: This fileset represents a comparison of RNA-seq data from a Pacific oyster (<em>Crassostrea gigas</em>) male gamete library to microarray data from Dheilly et al. 2012 "Gametogenesis in the Pacific Oyster Crassostrea gigas: A Microarrays-Based Analysis Identifies Sex and Stage Specific Genes". Specifically sequence reads were mapped to full-length transcripts represented on the array platformed used by Dheilly et al 2012. Data was joined using SQLShare. File Descriptions: <em>Fastafile_Microarray</em> - fasta file corresponding to targets on microarray. Used for RNA-seq analysis. <em>Rcode_OlsonandRoberts.R - </em>The R code used to visualize expression levels of RNA-Seq data relative to clusters of gene expression patterns during oyster gonad development identified by Dheilly et al. 2012. <em>SupplFig_OlsonandRoberts.pdf -</em> Boxplots of expression levels (RPKM) from RNA-Seq data relative to the 10 clusters of similar gene expression patterns during oyster gonad development identified by Dheilly et al. 2012. The number of genes represented are 511 (Cluster 1), 222 (Cluster 2), 312 (Cluster 3), 197 (Cluster 4), 226 (Cluster 5), 146 (Cluster 6), 200 (Cluster 7), 295 (Cluster 8), 332 (Cluster 9), and 41 (Cluster 10). <em>Dheilly_SexSpecific_S1_GonadRNAseq.txt - </em>Tab-delimited file that includes Dheilly et al table S1 and corresponding RNA-seq data from single male gamete library. <em>Dheilly_DiffGametogenesis_S2_GonadRNAseq.txt - </em>Tab-delimited file that includes Dheilly et al table S2 and corresponding RNA-seq data from single male gamete library. References: Dheilly, N. M., Lelong, C., Huvet, A., Kellner, K., Dubos, M., Riviere, G., Boudry, P., and Favrel, Pascal. (2012). Gametogenesis in the Pacific Oyster <em>Crassostrea gigas</em>: A Microarrays-Based Analysis Identifies Sex and Stage Specific Genes. PLoS ONE. 7:e36353-e36353. doi: 10.1371/journal.pone.0036353
DOI: 10.6084/m9.figshare.23796138.v1
title: Towards Understanding Emotions in Informal Developer Interactions: A Gitter Chat Study

description: A dataset of developer Gitter chat messages annotated with corresponding emotions, sentiments, and topics.
DOI: 10.6084/m9.figshare.20390463.v3
title: Effect of Avocado Leaves on Systolic, Diastolic Blood Pressure, Urine Volume, and Diuretic Activity Index on Wistar Rats

description: The data included the effect of extract of Avocado leaf or <em>P. Americana</em> Mill leaves on Systolic Blood Pressure, Diastolic Blood Pressure, Urine Volume, and Diuretic Activity Index on Wistar Rats.
DOI: 10.6084/m9.figshare.25810261.v2
title: WEBA dataset

description: The WEBA dataset is generated to reflect the effect of work content on perceived workload, acute stress, emotion, and performance of baristas in real-life working conditions. By in-depth analysis of the work characteristics from a multi-disciplinary approach, and utilizing a specific condition with event-driven sensors and wearable technology, a controlled environment is created in the closest way to a laboratory experiment. The work-content factors are emphasized and become the main stressors that impose their effect on the participants, with each factor places a different impact on the workload perception, thus creates different stress and mental status during a work shift. The WEBA dataset contributes to the further development of understanding the work content effect on labor performance and well-being.
DOI: 10.6084/m9.figshare.3530945.v1
title: Appendix F. Figures and regression statistics for relationships between handling times and total bill lengths of male and female Eulampis jugularis at straight artificial flowers.

description: Figures and regression statistics for relationships between handling times and total bill lengths of male and female Eulampis jugularis at straight artificial flowers.
DOI: 10.6084/m9.figshare.25422502.v2
title: Genome sequencing of baobabs

description: Genome assembly and annotation files of eight baobab species
DOI: 10.6084/m9.figshare.1024549.v1
title: British Library dawn chorus species annotations (bldawn)

description: This dataset presents in machine-readable format the species labelling for 60 sound recordings of dawn chorus atmospheres. The audio was recorded, annotated and donated to the British Library Sound Archive (BLSA) by three recordists (each represented by 20 recordings in this collection): Richard Beard, Richard Margoschis and Phil Riddett. The files we give here do not include the audio files - these need to be requested from the BLSA. Our files are CSV files which indicate the "wavfilename" (corresponding to the filenames used by the BLSA, except that we have used the file extension ".flac" rather than the original ".wav"), and then the presence or absence of each of 77 British bird species, as a table with "1" for presence and blank for absence.
DOI: 10.6084/m9.figshare.22746797.v1
title: Metadata file for signals with inferred annotation

description: Metadata in csv with comma delimeted data
DOI: 10.15468/dl.hjmztv
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Bhutan",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Parthenium L."
 ]
}

 The dataset includes 26 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009636-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.8081543.v2
title: readme.txt

description: Information on the content of this collection<br>
DOI: 10.15468/dl.r4upjv
title: Occurrence Download

description: A dataset containing 11875 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tithonia diversifolia (Hemsl.) A.Gray"
 ]
}

 The dataset includes 11875 records from 413 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009635-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.22949552.v3
title: 论文样本数据集-《针对电力系统人工智能算法的数据投毒后门攻击方法与检测方案》

description: 样本描述.csv 文件中描述了 样本编号、负荷水平、故障线路、故障首末端位置、故障持续时间、稳定性、训练测试集、4.2.1投毒样本和4.2.3投毒样本 文件夹Samples中为原始数据集 文件夹Samples_Poisoning中为4.2.4小节中相应毒化样本数据 所有样本文件格式为Matlab生成的mat格式。 1）原始数据集中样本的设置描述 新英格兰39母线系统包括39条母线、19台负载、9台发电机和一个理想电压源。在每条母线上均部署相量测量单元(PMU)以监控动态响应过程。通过蒙特卡洛方法共生成2000组样本来模拟不同的运行模式和故障场景，设置负载变化范围为初始值的80%～120%，4%递增。任何线路首末端的20%～80%线路都可能发生三相短路故障，故障持续时间在0.1到0.35秒之间。每个样本的标签是系统是否稳定，通过仿真得到。在生成样本中随机选取1800组样本进行训练，200组样本进行测试。 2）4.2.1节中随机选取的10%的样本构成的投毒数据集样本序号列表 6, 8, 21, 23, 35, 42, 45, 63, 110, 111, 139, 148, 161, 163, 168, 193, 199, 212, 213, 227, 228, 231, 232, 237, 242, 247, 252, 262, 273, 290, 296, 299, 318, 326, 350, 354, 370, 377, 387, 412, 474, 479, 480, 501, 510, 516, 535, 538, 540, 593, 599, 602, 603, 607, 618, 624, 627, 634, 641, 642, 646, 647, 650, 659, 662, 701, 712, 716, 727, 735, 766, 772, 805, 809, 813, 814, 817, 823, 832, 841, 843, 846, 861, 870, 874, 898, 904, 906, 910, 938, 943, 951, 954, 955, 962, 973, 974, 979, 980, 1000, 1001, 1002, 1003, 1026, 1028, 1029, 1040, 1069, 1103, 1104, 1107, 1108, 1156, 1173, 1176, 1178, 1181, 1186, 1189, 1198, 1200, 1232, 1233, 1236, 1241, 1244, 1255, 1258, 1271, 1304, 1306, 1310, 1315, 1333, 1336, 1354, 1357, 1360, 1383, 1393, 1422, 1441, 1443, 1471, 1484, 1485, 1486, 1496, 1504, 1506, 1508, 1518, 1529, 1537, 1538, 1543, 1545, 1565, 1566, 1577, 1587, 1595, 1655, 1658, 1661, 1664, 1667, 1703, 1705, 1710, 1718, 1723, 1728, 1737, 1742, 1743, 1749, 1750, 1768, 1789 3）4.2.3节仿真中，随机选取10%样本的一半样本（修改G1、G2、G3）对应的样本序号列表，以及另一半样本（修改G4、G5、G9）对应的样本序号列表。 修改G1、G2、G3对应的样本序号列表： 6, 8, 21, 23, 35, 42, 45, 63, 110, 111, 139, 148, 161, 163, 168, 193, 199, 212, 213, 227, 228, 231, 232, 237, 242, 247, 252, 262, 273, 290, 296, 299, 318, 326, 350, 354, 370, 377, 387, 412, 474, 479, 480, 501, 510, 516, 535, 538, 540, 593, 599, 602, 603, 607, 618, 624, 627, 634, 641, 642, 646, 647, 650, 659, 662, 701, 712, 716, 727, 735, 766, 772, 805, 809, 813, 814, 817, 823, 832, 841, 843, 846, 861, 870, 874, 898, 904, 906, 910, 938 修改G4、G5、G9对应的样本序号列表： 943, 951, 954, 955, 962, 973, 974, 979, 980, 1000, 1001, 1002, 1003, 1026, 1028, 1029, 1040, 1069, 1103, 1104, 1107, 1108, 1156, 1173, 1176, 1178, 1181, 1186, 1189, 1198, 1200, 1232, 1233, 1236, 1241, 1244, 1255, 1258, 1271, 1304, 1306, 1310, 1315, 1333, 1336, 1354, 1357, 1360, 1383, 1393, 1422, 1441, 1443, 1471, 1484, 1485, 1486, 1496, 1504, 1506, 1508, 1518, 1529, 1537, 1538, 1543, 1545, 1565, 1566, 1577, 1587, 1595, 1655, 1658, 1661, 1664, 1667, 1703, 1705, 1710, 1718, 1723, 1728, 1737, 1742, 1743, 1749, 1750, 1768, 1789
DOI: 10.15468/dl.fwtuah
title: Occurrence Download

description: A dataset containing 11875 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tithonia diversifolia (Hemsl.) A.Gray"
 ]
}

 The dataset includes 11875 records from 413 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009637-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.19499522.v1
title: patches and local annotations, slide 118, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.27935397.v1
title: MADAR dataset

description: The MADAR dataset is a sub-shared dataset, that includes two corpora, corpus-6 and corpus-26
DOI: 10.6084/m9.figshare.28668509.v1
title: Los nomogram

description: LOS prediction model
DOI: 10.6084/m9.figshare.23692398.v1
title: Plant material segmentation masks

description: Plant material segmentation masks linear interpolated, 1 indicates a plant pixel and 0 background. Derived from bounding boxes and color filtering.
DOI: 10.6084/m9.figshare.27055528.v1
title: Data and code for: Betts et al. 2024 Congruent long-term declines in carbon and biodiversity are a signature of forest degradation

description: Recent global policy initiatives aimed at reducing forest degradation require practical definitions of degradation that are readily monitored. However, consistent approaches for monitoring forest degradation over the long term and at broad scales are lacking. We quantified the long-term effects of intensive wood harvest on above-ground carbon and biodiversity at fine resolutions (30 m<sup>2</sup>) and broad scales (New Brunswick, Canada; 72,908km<sup>2</sup>). Model predictions for above-ground biomass were highly correlated with independent data (<i>r</i><i> </i>= 0.77). After accounting for carbon stored in wood products, net CO<sub>2</sub> emissions from forests for the region from 1985-2020 were 141 CO<sub>2</sub>e Tg (4.02 TgCO<sub>2</sub>e year<sup>-1</sup>; 30% of all reported emissions). We found strong positive correlations between locations with declines in above-ground carbon and habitats for old-forest bird species, which have lost &gt;20% habitat over 35 years. High congruence between biodiversity and forest carbon offers potential for policy incentives to conserve both objectives simultaneously and slow rates of forest degradation. These methods could be used to track forest degradation for managed forest regions worldwide.
DOI: 10.6084/m9.figshare.14838342.v1
title: SDM-Genomic-Datasets

description: These datasets are generated from cosmic mutation dataset in COSMIC database (GRCh37, version90) with the purpose of evaluating available ontology-based Data Integration engines.They include datasets with different number of records (10k, 100k, 1 million, and 10 million records), attributes (2-15), and duplicated values (25-75 percent of duplicated records and each duplicated value being repeated 10/20 times). The details of generation of these datasets can be found in the papers where they have been used in empirical evaluation: https://doi.org/10.1145/3340531.3412881 and 10.5281/zenodo.3993657Also, the examples of mapping rules to integrate these datasets are available in https://github.com/SDM-TIB/SDM-RDFizer-Experiments/tree/master/cikm2020/experiments/mappings<br>
DOI: 10.6084/m9.figshare.11986797.v1
title: Gulf of Papua Bathymetry raster dataset

description: A new bathymetric grid for the Gulf of Papua and northern Australia was produced for the area 140°–150°E, 6°–14°S, with a 3.6" (~110 m) cell size. New multibeam sonar surveys have added much needed detail to a region of the seabed where previously little was known. In shallow Australian waters, bathymetry derived from Landsat satellite imagery was used to supplement traditionally acquired bathymetric data. For onshore areas, Shuttle Radar Topography Mission data were used for topographic control. The final grid revealed numerous features not observed in previous compilations of bathymetric data for the region. Bathymetric surveys on the continental shelf revealed an incised shelf with highly variable valley morphology. Prograding clinoforms are infilling valleys on the continental shelf and mark the seaward extension of the Fly River delta. A linear, relict shelf-edge barrier marks the shelfbreak in the northern Ashmore Trough region, elsewhere the shelf break is scalloped and incised by canyons. Large mass transport deposits are widespread on the continental slope and indicate regions where mass wasting is common.
DOI: 10.6084/m9.figshare.27323821.v1
title: Pluronic F127/lecithin PLGA nanoparticles as carriers of monocyte-targeted jakinibs: a potential therapeutic platform

description: <b>Aim:</b> In this study, PLGA nanoparticles (PNPs) emulsified in Pluronic F127 (F127)/Lecithin (LEC) were designed to load Itacitinib (ITA), a selective JAK1 inhibitor, for targeting human monocytes. <b>Materials & methods:</b> The physicochemical characteristics of empty and ITA-loaded F127/LEC PNPs were analyzed. The binding and internalization of NPs in leukocytes were evaluated. The effect of NPs on monocyte activation and JAK1 inhibition was assessed. <b>Results:</b> F127/LEC PNPs were selectively bound and internalized by monocytes, sparing other leukocytes. ITA-F127/LEC PNPs significantly dampened monocyte activation. They also inhibited the monocyte's ability to promote T-cell proliferation and inhibited proinflammatory cytokine production. <b>Conclusion:</b> ITA-loaded F127/LEC PNPs showed potential for monocyte-targeted therapy, offering new avenues for disease treatment. The F127/LEC PNPs exhibited a uniform particle size distribution with an average size exceeding 150 nm. The encapsulation efficiency of Itacitinib (ITA) in F127/LEC PNPs was 50.59%. The nanoparticles maintained stability for 10 days at four Celsius degrees, with consistent size and ζ-potential. F127/LEC PNPs were selectively bound and were internalized by monocytes, sparing other leukocyte subpopulations. This selective uptake suggests the potential for targeted drug delivery to monocytes. ITA-F127/LEC PNPs significantly reduced the release of proinflammatory cytokines (TNF-α, IL-12, IL-1β, and IL-10) in IFN-γ-stimulated monocytes. Both free and encapsulated ITA inhibited STAT1 phosphorylation in IFN-γ-stimulated monocytes, aligning with previous studies on JAK inhibitors. ITA-F127/LEC PNPs inhibited the ability of monocytes to stimulate T-cell proliferation. This effect consistently reduced surface expression markers and proinflammatory cytokine production. PLGA nanoparticles displayed a biphasic release of ITA, with an initial burst release of 34% within 4 h, followed by a slower release over the next 10 h (∼40%). The Korsmeyer-Peppas model best described the release profile, indicating a Fickian diffusion pattern. ITA-loaded F127/LEC PNPs showed promising therapeutic potential for targeting monocytes in diseases where they play a crucial role. The nanoparticles effectively suppressed monocyte activation and function <i>in vitro</i>, suggesting potential applications in various inflammatory diseases. Monocytes selectively bind and internalize F127/LEC PNPs, highlighting their potential as vehicles for targeted drug delivery. Encapsulation of ITA in these nanoparticles could increase local drug concentration while reducing systemic side effects. Further, <i>in vivo</i> research is essential to validate these findings and thoroughly assess the clinical applications of these nanoparticles. The project's next phase will focus on evaluating the biosafety, biodistribution, and <i>in vivo</i> therapeutic effectiveness of ITA-F127/LEC PNPs in murine models.
DOI: 10.6084/m9.figshare.12982406.v2
title: VissioLemboLucariniGhil2020

description: Data used for the figures in the paper "Ranking IPCC Model Performance Using the Wasserstein Distance", by Vissio G., Lembo V., Lucarini V. and Ghil M.<br>
DOI: 10.6084/m9.figshare.12283760.v1
title: Slovenian Building Cadastre

description: Polygons representing footprints of buildings from Slovenian Building Cadastre. Format: Shapefile<br>Available under Slovenian license Creative Commons 2.5.https://creativecommons.org/licenses/by/2.5/si/legalcode<br>Source: Geodetska uprava Republike Slovenije, Grafični podatki katastra stavb, 11.5.2020<br>
DOI: 10.6084/m9.figshare.19768174.v11
title: Chemical Multiverse

description: Technological advances and practical applications of the chemical space concept in drug discovery, natural product research, and several other research areas are continuously attracting the scientific community´s attention. The current large- and ultra-large chemical spaces are associated not only with the significant increase in the number of compounds that can potentially be made and exist, but also in the increasing number of experimental and calculated descriptors that are emerging that encode the molecular structure and/or property aspects of the molecules. Due to the importance and continued evolution of compound libraries, herein we review definitions proposed in the literature for chemical space and we emphasize the approaches to generate a consensus view of the chemical space. We also introduce the concept of<em> chemical multiverse</em> as an alternative view of the chemical space.
DOI: 10.6084/m9.figshare.11925846.v1
title: EEG_attention_tinnitus_distress.xlsx

description: The Datasheet contains the data used in the article entitled: "Electrophysiological correlates of focused attention on<br> low- and high-distressed tinnitus" submitted to the Plos One journal.