cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12161910.v1
title: KAP COVID HCW Data.xlsx

description: This data-set consists raw data for a study on knowledge, attitude and practices of healthcare workers in Makerere University Teaching Hospitals towards Coronavirus Disease (COVID-19).
DOI: 10.6084/m9.figshare.12161874
title: Species list of the European herpetofauna ‒ update by the Taxonomic Committee of the Societas Europaea Herpetologica

description: The last species list of the European herpetofauna was published by Speybroeck, Beukema and Crochet (2010). In the meantime, ongoing research led to numerous taxonomic changes, including the discovery of new species-level lineages as well as reclassifications at genus level, requiring significant changes to this list. As of 2019, a new Taxonomic Committee was established as an official entity within the European Herpetological Society, Societas Europaea Herpetologica (SEH). Twelve members from nine European countries reviewed, discussed and voted on recent taxonomic research on a case-by-case basis. Accepted changes led to critical compilation of a new species list, which is hereby presented and discussed. According to our list, 301 species (95 amphibians, 15 chelonians, including six species of sea turtles, and 191 squamates) occur within our expanded geographical definition of Europe. The list includes 14 non-native species (three amphibians, one chelonian, and ten squamates).
DOI: 10.6084/m9.figshare.12161910.v2
title: KAP COVID HCW Data.xlsx

description: This data-set consists raw data for a study on knowledge, attitude and practices of healthcare workers in Makerere University Teaching Hospitals towards Coronavirus Disease (COVID-19).
DOI: 10.6084/m9.figshare.12161874.v1
title: Species list of the European herpetofauna ‒ update by the Taxonomic Committee of the Societas Europaea Herpetologica

description: The last species list of the European herpetofauna was published by Speybroeck, Beukema and Crochet (2010). In the meantime, ongoing research led to numerous taxonomic changes, including the discovery of new species-level lineages as well as reclassifications at genus level, requiring significant changes to this list. As of 2019, a new Taxonomic Committee was established as an official entity within the European Herpetological Society, Societas Europaea Herpetologica (SEH). Twelve members from nine European countries reviewed, discussed and voted on recent taxonomic research on a case-by-case basis. Accepted changes led to critical compilation of a new species list, which is hereby presented and discussed. According to our list, 301 species (95 amphibians, 15 chelonians, including six species of sea turtles, and 191 squamates) occur within our expanded geographical definition of Europe. The list includes 14 non-native species (three amphibians, one chelonian, and ten squamates).
DOI: 10.6084/m9.figshare.12161910.v3
title: KAP COVID HCW Data.xlsx

description: This data-set consists raw data for a study on knowledge, attitude and practices of healthcare workers in Makerere University Teaching Hospitals towards Coronavirus Disease (COVID-19).
DOI: 10.6084/m9.figshare.12161805
title: Brambach genera origins

description: Origins of tree genera from Brambach et al. 2020 J. Biogeogr.
DOI: 10.6084/m9.figshare.12161775
title: Supplementary Material for: Hospitalization and Critical Illness in Chronic Kidney Disease

description: <b><i>Background:</i></b> Patients with chronic kidney disease (CKD) who are hospitalized with a critical illness are at increased risk for adverse outcomes. We studied the predictors of hospitalization with critical illness among patients with non-dialysis-dependent CKD stages 3 and 4 in a safety-net healthcare setting. <b><i>Methods:</i></b> A retrospective cohort study was conducted among patients ≥18 years of age with CKD stages 3 and 4 using a CKD registry from a safety-net healthcare system. Hospitalizations with critical illness were identified among patients requiring nonelective admission or transfer to the intermediate or intensive care unit during a 3-year period after the diagnosis of CKD. Poisson regression was used to determine associations between baseline characteristics and hospitalization requiring intermediate or intensive care among all CKD patients and in those with different stages of CKD. Outcomes of these hospitalizations were also tabulated. <b><i>Results:</i></b> Among 8,302 patients with CKD stages 3 and 4, 1,298 were hospitalized and 495 required intermediate or intensive care during a 3-year follow-up period. In the adjusted analysis, advanced CKD, Hispanics (incident rate ratio [IRR]: 1.88), non-Hispanic Blacks (IRR: 1.48), presence of congestive heart failure (IRR: 2.09), cardiovascular disease (IRR: 1.57), chronic pulmonary disease (IRR: 1.60), liver disease, malignancy, and anemia were associated with higher risk of hospitalization requiring intermediate or intensive care. The association of age, gender, race/ethnicity, congestive heart failure, anemia, and body mass index with hospitalization requiring intermediate or intensive care differed significantly by CKD stage (<i>p</i> value for interaction term &lt;0.05). Congestive heart failure and severity of anemia were associated with a higher risk of hospitalization requiring intermediate or intensive care among patients with mild CKD, and the magnitude of association attenuated among patients with advanced CKD. <b><i>Conclusions:</i></b> The burden of hospitalization with critical illness among patients with non-dialysis-dependent CKD stages 3 and 4 remains high and was associated with demographic factors and comorbid medical conditions, especially among those with congestive heart failure and cardiovascular disease. Targeted, effective interventions to reduce the burden of hospitalization and critical illness in CKD patients within safety-net healthcare systems are needed.
DOI: 10.6084/m9.figshare.12161781
title: Stable isotope data. The nature and origins of decameter-scale porosity in Ordovician carbonate rocks, Halahatang oilfield, Tarim Basin, China

description: Stable isotope data
DOI: 10.6084/m9.figshare.12161784
title: Simplified Tarim GPS inversion. The nature and origins of decameter-scale porosity in Ordovician carbonate rocks, Halahatang oilfield, Tarim Basin, China

description: Simplified Tarim GPS inversion
DOI: 10.6084/m9.figshare.12161781.v1
title: Stable isotope data. The nature and origins of decameter-scale porosity in Ordovician carbonate rocks, Halahatang oilfield, Tarim Basin, China

description: Stable isotope data
DOI: 10.6084/m9.figshare.12161775.v1
title: Supplementary Material for: Hospitalization and Critical Illness in Chronic Kidney Disease

description: <b><i>Background:</i></b> Patients with chronic kidney disease (CKD) who are hospitalized with a critical illness are at increased risk for adverse outcomes. We studied the predictors of hospitalization with critical illness among patients with non-dialysis-dependent CKD stages 3 and 4 in a safety-net healthcare setting. <b><i>Methods:</i></b> A retrospective cohort study was conducted among patients ≥18 years of age with CKD stages 3 and 4 using a CKD registry from a safety-net healthcare system. Hospitalizations with critical illness were identified among patients requiring nonelective admission or transfer to the intermediate or intensive care unit during a 3-year period after the diagnosis of CKD. Poisson regression was used to determine associations between baseline characteristics and hospitalization requiring intermediate or intensive care among all CKD patients and in those with different stages of CKD. Outcomes of these hospitalizations were also tabulated. <b><i>Results:</i></b> Among 8,302 patients with CKD stages 3 and 4, 1,298 were hospitalized and 495 required intermediate or intensive care during a 3-year follow-up period. In the adjusted analysis, advanced CKD, Hispanics (incident rate ratio [IRR]: 1.88), non-Hispanic Blacks (IRR: 1.48), presence of congestive heart failure (IRR: 2.09), cardiovascular disease (IRR: 1.57), chronic pulmonary disease (IRR: 1.60), liver disease, malignancy, and anemia were associated with higher risk of hospitalization requiring intermediate or intensive care. The association of age, gender, race/ethnicity, congestive heart failure, anemia, and body mass index with hospitalization requiring intermediate or intensive care differed significantly by CKD stage (<i>p</i> value for interaction term &lt;0.05). Congestive heart failure and severity of anemia were associated with a higher risk of hospitalization requiring intermediate or intensive care among patients with mild CKD, and the magnitude of association attenuated among patients with advanced CKD. <b><i>Conclusions:</i></b> The burden of hospitalization with critical illness among patients with non-dialysis-dependent CKD stages 3 and 4 remains high and was associated with demographic factors and comorbid medical conditions, especially among those with congestive heart failure and cardiovascular disease. Targeted, effective interventions to reduce the burden of hospitalization and critical illness in CKD patients within safety-net healthcare systems are needed.
DOI: 10.6084/m9.figshare.12161784.v1
title: Simplified Tarim GPS inversion. The nature and origins of decameter-scale porosity in Ordovician carbonate rocks, Halahatang oilfield, Tarim Basin, China

description: Simplified Tarim GPS inversion
DOI: 10.6084/m9.figshare.12161505
title: Supplementary Material for: Alcohol-Induced Immune Dysregulation in the Colon Is Diurnally Variable

description: <b><i>Introduction:</i></b> Alcohol increases the risk of colon cancer. Colonic inflammation mediates the effects of alcohol on colon carcinogenesis. Circadian rhythm disruption enhances the alcohol’s effect on colonic inflammation and cancer. <b><i>Objective:</i></b> Here, we investigate the diurnal variation of lymphocyte infiltration in the colonic mucosa in response to alcohol. <b><i>Methods:</i></b> Sixty C57BL6/J mice were fed a chow diet, and gavaged with alcohol at a specific time once per day for 3 consecutive days. Immunohistochemistry and immunofluorescence staining were used to quantify total, effector, and regulatory T cells in the colon. Student’s <i>t</i> test, one-way ANOVA, and two-way ANOVA were used to determine significance. <b><i>Results:</i></b> Following the alcohol binge, the composition of immune T cell subsets in the mouse colon was time-dependent. Alcohol did not alter the total number of CD3<sup>+</sup> T cells. However, upon alcohol treatment, T-bet<sup>+</sup> T helper 1 (Th1) cells appeared to dominate the T cell population following a reduction in Foxp3<sup>+</sup> regulatory T cell (Treg) numbers. Depletion of Tregs was time-dependent, and their numbers were dramatically reduced when alcohol was administered during the rest phase. A reduction in Tregs significantly increased the Th1/Treg ratio, resulting in a more proinflammatory milieu. <b><i>Conclusions:</i></b> Alcohol enhanced the proinflammatory profile in the colon mucosa, as demonstrated by a higher T-bet<sup>+</sup>/Foxp3<sup>+</sup> ratio, especially during the rest phase<b><i>.</i></b>These findings may partly account for the interaction of circadian rhythm disruption with alcohol in colon inflammation and cancer.
DOI: 10.6084/m9.figshare.12161505.v1
title: Supplementary Material for: Alcohol-Induced Immune Dysregulation in the Colon Is Diurnally Variable

description: <b><i>Introduction:</i></b> Alcohol increases the risk of colon cancer. Colonic inflammation mediates the effects of alcohol on colon carcinogenesis. Circadian rhythm disruption enhances the alcohol’s effect on colonic inflammation and cancer. <b><i>Objective:</i></b> Here, we investigate the diurnal variation of lymphocyte infiltration in the colonic mucosa in response to alcohol. <b><i>Methods:</i></b> Sixty C57BL6/J mice were fed a chow diet, and gavaged with alcohol at a specific time once per day for 3 consecutive days. Immunohistochemistry and immunofluorescence staining were used to quantify total, effector, and regulatory T cells in the colon. Student’s <i>t</i> test, one-way ANOVA, and two-way ANOVA were used to determine significance. <b><i>Results:</i></b> Following the alcohol binge, the composition of immune T cell subsets in the mouse colon was time-dependent. Alcohol did not alter the total number of CD3<sup>+</sup> T cells. However, upon alcohol treatment, T-bet<sup>+</sup> T helper 1 (Th1) cells appeared to dominate the T cell population following a reduction in Foxp3<sup>+</sup> regulatory T cell (Treg) numbers. Depletion of Tregs was time-dependent, and their numbers were dramatically reduced when alcohol was administered during the rest phase. A reduction in Tregs significantly increased the Th1/Treg ratio, resulting in a more proinflammatory milieu. <b><i>Conclusions:</i></b> Alcohol enhanced the proinflammatory profile in the colon mucosa, as demonstrated by a higher T-bet<sup>+</sup>/Foxp3<sup>+</sup> ratio, especially during the rest phase<b><i>.</i></b>These findings may partly account for the interaction of circadian rhythm disruption with alcohol in colon inflammation and cancer.
DOI: 10.6084/m9.figshare.12161478
title: BA-GSS

description: <br>Eddy covariance dataset for Bob Allen Keys, Florida
DOI: 10.6084/m9.figshare.12161463
title: wing shapes and wing kinematics.7z

description: Detailed wing shapes and orginal wing kinematics for the article "Wing rapid responses and aerodynamics of fruit flies during headwind gust perturbations".
DOI: 10.6084/m9.figshare.12161478.v1
title: BA-GSS

description: <br>Eddy covariance dataset for Bob Allen Keys, Florida
DOI: 10.6084/m9.figshare.12161223
title: Dampak Bencana Alam Terhadap Pariwisata.docx

description: Terjadinya bencana alam akan memiliki dampak kepada daerah yang mengalami bencana tersebut dari beberapa aspek, terutama aspek pariwisata. Hal tersebut akan membuat wisatawan berfikir untuk melakukan perjalanan wisata ke daerah tersebut.
DOI: 10.6084/m9.figshare.12161199
title: Anuran Bioacoustics Data_Panna Tiger Reserve

description: It contain an Excel file of the raw data of call properties measurements of 370 anuran advertisement calls from 37 individual males of 11 species in Panna Tiger Reserve, Madhya Pradesh. It also contains advertisement calls of each species used to produce the oscillograms, spectrograms, power spectrum of the advertisement calls shown in figure five of the manuscript "Determining cryptic diversity of amphibians of Panna Tiger Reserve, central India using integrated approach reveals five new state records".
DOI: 10.6084/m9.figshare.12161223.v1
title: Dampak Bencana Alam Terhadap Pariwisata.docx

description: Terjadinya bencana alam akan memiliki dampak kepada daerah yang mengalami bencana tersebut dari beberapa aspek, terutama aspek pariwisata. Hal tersebut akan membuat wisatawan berfikir untuk melakukan perjalanan wisata ke daerah tersebut.
DOI: 10.6084/m9.figshare.12161199.v1
title: Anuran Bioacoustics Data_Panna Tiger Reserve

description: It contain an XL file of the raw data of call properties measurements of 370 anuran advertisement calls from 37 individual males of 11 species in Panna Tiger Reserve, Madhya Pradesh. It also contains advertisement calls of each species used to produce the oscillograms, spectrograms, power spectrum of the advertisement calls shown in figure five of the manuscript "Determining cryptic diversity of amphibians of Panna Tiger Reserve, central India using integrated approach reveals five new state records".
DOI: 10.6084/m9.figshare.12160509
title: Additional file 5 of Islet-expressed circular RNAs are associated with type 2 diabetes status in human primary islets and in peripheral blood

description: Additional file 5.
DOI: 10.6084/m9.figshare.12160509.v1
title: Additional file 5 of Islet-expressed circular RNAs are associated with type 2 diabetes status in human primary islets and in peripheral blood

description: Additional file 5.
DOI: 10.6084/m9.figshare.12160458
title: Additional file 8 of PGRMC1 phosphorylation affects cell shape, motility, glycolysis, mitochondrial form and function, and tumor growth

description: Additional file 8:File S7. A zip archive containing time lapse Holo-tomographic video.avi files of cells. These images are based upon differences in refractive index [53], and are provided for the dynamic visualization of mitochondria. Prominent visible features include small white lipid droplets and cholesterol-rich mitochondria [21], as well as nuclear membrane and nucleoli. The previously described MIA PaCa-2 cell bleb-like protrusions [34] are apparent as highly dynamic rearrangements of the cytoplasmic membrane, which may contribute to intercellular communication. (A) MP cells. (B) WT cells. (C) DM cells. (D) TM cells.
DOI: 10.6084/m9.figshare.12160458.v1
title: Additional file 8 of PGRMC1 phosphorylation affects cell shape, motility, glycolysis, mitochondrial form and function, and tumor growth

description: Additional file 8:File S7. A zip archive containing time lapse Holo-tomographic video.avi files of cells. These images are based upon differences in refractive index [53], and are provided for the dynamic visualization of mitochondria. Prominent visible features include small white lipid droplets and cholesterol-rich mitochondria [21], as well as nuclear membrane and nucleoli. The previously described MIA PaCa-2 cell bleb-like protrusions [34] are apparent as highly dynamic rearrangements of the cytoplasmic membrane, which may contribute to intercellular communication. (A) MP cells. (B) WT cells. (C) DM cells. (D) TM cells.
DOI: 10.6084/m9.figshare.12160443
title: Additional file 5 of PGRMC1 phosphorylation affects cell shape, motility, glycolysis, mitochondrial form and function, and tumor growth

description: Additional file 5:File S4. An excel file containing proteomics results for 243 proteins which fulfil stringency criteria of t-test p-value of less than 0.05, and a fold change greater than 1.5 by both the protein and peptide approaches from File S2. Related to Fig. 3. Column B shows “red” (more abundant in comparative sample 1) and “blue” (less abundant in sample 1) significantly differential proteins for each pair wise comparison which were later used for “red” and ‘blue” WebGestalt pathways enrichment analysis (File S5). Comparisons follow File S2.
DOI: 10.6084/m9.figshare.12160449
title: Additional file 7 of PGRMC1 phosphorylation affects cell shape, motility, glycolysis, mitochondrial form and function, and tumor growth

description: Additional file 7:File S6. An excel file with heat map protein IDs and pathways for red vs. blue pathways adjP
DOI: 10.6084/m9.figshare.12160446
title: Additional file 6 of PGRMC1 phosphorylation affects cell shape, motility, glycolysis, mitochondrial form and function, and tumor growth

description: Additional file 6:File S5. WebGestalt pathway mapping excel results file for red and blue proteins from File S4. Related to Fig. 3. (A) WebGestalt Features (GO, KEGG Pathways, Wikipathways, Pathway Commons, Transcription Factors) significant at the adjP≤0.001 level between any 2 comparisons. (B) Features from A, viewed at the adjP
DOI: 10.6084/m9.figshare.12160449.v1
title: Additional file 7 of PGRMC1 phosphorylation affects cell shape, motility, glycolysis, mitochondrial form and function, and tumor growth

description: Additional file 7:File S6. An excel file with heat map protein IDs and pathways for red vs. blue pathways adjP
DOI: 10.6084/m9.figshare.12160437
title: Additional file 4 of PGRMC1 phosphorylation affects cell shape, motility, glycolysis, mitochondrial form and function, and tumor growth

description: Additional file 4:File S3. Principal component analysis results for pathways associated with SWATH-MS proteomics results.
DOI: 10.6084/m9.figshare.12160443.v1
title: Additional file 5 of PGRMC1 phosphorylation affects cell shape, motility, glycolysis, mitochondrial form and function, and tumor growth

description: Additional file 5:File S4. An excel file containing proteomics results for 243 proteins which fulfil stringency criteria of t-test p-value of less than 0.05, and a fold change greater than 1.5 by both the protein and peptide approaches from File S2. Related to Fig. 3. Column B shows “red” (more abundant in comparative sample 1) and “blue” (less abundant in sample 1) significantly differential proteins for each pair wise comparison which were later used for “red” and ‘blue” WebGestalt pathways enrichment analysis (File S5). Comparisons follow File S2.
DOI: 10.6084/m9.figshare.12160446.v1
title: Additional file 6 of PGRMC1 phosphorylation affects cell shape, motility, glycolysis, mitochondrial form and function, and tumor growth

description: Additional file 6:File S5. WebGestalt pathway mapping excel results file for red and blue proteins from File S4. Related to Fig. 3. (A) WebGestalt Features (GO, KEGG Pathways, Wikipathways, Pathway Commons, Transcription Factors) significant at the adjP≤0.001 level between any 2 comparisons. (B) Features from A, viewed at the adjP
DOI: 10.6084/m9.figshare.12160428
title: Additional file 3 of PGRMC1 phosphorylation affects cell shape, motility, glycolysis, mitochondrial form and function, and tumor growth

description: Additional file 3:File S2. An Excel file showing experimental design, normalized ion intensities for 1330 proteins identified by SWATH-MS proteomics, and six pairwise comparisons between the 4 sample types [1) MP v. WT, 2) MP v. DM, 3) MP v. TM, 4) WT v. DM, 5) WT v. TM, and 6) DM v. TM]. Related to Fig. 3. The first tab contains a detailed descriptive legend. Data are available via ProteomeXchange with identifier PXD014716.
DOI: 10.6084/m9.figshare.12160437.v1
title: Additional file 4 of PGRMC1 phosphorylation affects cell shape, motility, glycolysis, mitochondrial form and function, and tumor growth

description: Additional file 4:File S3. Principal component analysis results for pathways associated with SWATH-MS proteomics results.
DOI: 10.6084/m9.figshare.12160428.v1
title: Additional file 3 of PGRMC1 phosphorylation affects cell shape, motility, glycolysis, mitochondrial form and function, and tumor growth

description: Additional file 3:File S2. An Excel file showing experimental design, normalized ion intensities for 1330 proteins identified by SWATH-MS proteomics, and six pairwise comparisons between the 4 sample types [1) MP v. WT, 2) MP v. DM, 3) MP v. TM, 4) WT v. DM, 5) WT v. TM, and 6) DM v. TM]. Related to Fig. 3. The first tab contains a detailed descriptive legend. Data are available via ProteomeXchange with identifier PXD014716.
DOI: 10.6084/m9.figshare.12160413
title: Additional file 2 of The influence of spaceflight on the astronaut salivary microbiome and the search for a microbiome biomarker for viral reactivation

description: Additional file 2. Database S1.
DOI: 10.6084/m9.figshare.12160419
title: Additional file 3 of The influence of spaceflight on the astronaut salivary microbiome and the search for a microbiome biomarker for viral reactivation

description: Additional file 3. Database S2.
DOI: 10.6084/m9.figshare.12160422
title: Additional file 4 of The influence of spaceflight on the astronaut salivary microbiome and the search for a microbiome biomarker for viral reactivation

description: Additional file 4. Database S3.
DOI: 10.6084/m9.figshare.12160413.v1
title: Additional file 2 of The influence of spaceflight on the astronaut salivary microbiome and the search for a microbiome biomarker for viral reactivation

description: Additional file 2. Database S1.
DOI: 10.6084/m9.figshare.12160419.v1
title: Additional file 3 of The influence of spaceflight on the astronaut salivary microbiome and the search for a microbiome biomarker for viral reactivation

description: Additional file 3. Database S2.
DOI: 10.6084/m9.figshare.12160422.v1
title: Additional file 4 of The influence of spaceflight on the astronaut salivary microbiome and the search for a microbiome biomarker for viral reactivation

description: Additional file 4. Database S3.