cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.44kd3x
title: Occurrence Download

description: A dataset containing 42667 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Rangifer tarandus (Linnaeus, 1758))",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 42667 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021401-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.fc208
title: Data from: Anatomy of a cline: dissecting anti-predatory adaptations in a marine gastropod along the U.S. Atlantic coast

description: The scope of anti-predatory adaptation is expected to be greater in warm
 than in cold environments. High temperatures lower the costs associated
 with the production and maintenance of energetically expensive traits and
 enable ecological interactions to intensify. We tested this hypothesis by
 characterizing the expression of anti-predatory morphology within a marine
 gastropod species (the knobbed whelk, Busycon carica) over a large
 (&gt;1,400 km) geographic area that spans more than 10°C annual
 temperature variation. We also conducted experimental predation studies
 with a powerful durophagous predator, the stone crab (Menippe), to verify
 the anti-predatory advantages of a heavily ornamented shell morphology
 (e.g., increased thickness, pronounced spines), and we used repair scar
 data to assess clinal variation in selective pressure from predators. We
 predicted that repair scar rates would be greatest in warm southernmost
 latitudes, and that expression of energetically costly anti-predatory
 morphology would peak in concert with elevated predation pressures.
 Experiments confirmed that whelks with energetically costly, heavily
 ornamented shells had higher survivorship rates than those with weakly
 ornamented shells. As predicted, we also found that the expression of
 anti-predatory traits was greatest in the southern part of B. carica’s
 range. After standardizing shells for size, shape, and exposure time to
 enemies, repair scar rates also peaked to the south. Taken together, these
 results suggest that the expression of anti-predatory traits along the
 geographic cline is governed by the interaction of two selective factors:
 temperature and predation, with the former acting as the ultimate control
 on the scope of adaptation both by escalating predation pressure in the
 southern part of B. carica’s range and by physically limiting (to the
 north) and facilitating (to the south) the production of anti-predatory
 traits. Feedbacks between temperature and predation thus causally interact
 to enable and drive, respectively, the observed geographic cline in
 energy-intensive anti-predatory shell traits.
description: Linear measurements and
 Repair scar dataThis file contains
 linear measurements and repair scar data for specimens not used in
 predation experiments.KosloskietalEcog_LinearsandRepairs.xlsxPredation Experiment DataThis file contains outcomes and linear measurements for individuals of B. carica used in predation experiments.KosloskietalEcog_Predation.xlsx
DOI: 10.5061/dryad.3861f
title: Data from: Evolution of inbreeding avoidance and inbreeding preference through mate choice among interacting relatives

description: While extensive population genetic theory predicts conditions favoring
 evolution of self-fertilization versus outcrossing, there is no analogous
 theory that predicts conditions favoring evolution of inbreeding avoidance
 or inbreeding preference enacted through mate choice given obligate
 biparental reproduction. Multiple interacting processes complicate the
 dynamics of alleles underlying such inbreeding strategies, including
 sexual conflict, distributions of kinship, genetic drift, purging of
 mutation load, direct costs, and restricted kin discrimination. We
 incorporated these processes into an individual-based model to predict
 conditions where selection should increase or decrease frequencies of
 alleles causing inbreeding avoidance or inbreeding preference when females
 or males controlled mating. Selection for inbreeding avoidance occurred
 given strong inbreeding depression when either sex chose mates, while
 selection for inbreeding preference occurred given very weak inbreeding
 depression when females chose but never occurred when males chose.
 Selection for both strategies was constrained by direct costs and
 restricted kin discrimination. Purging was negligible, but allele
 frequencies were strongly affected by drift in small populations, while
 selection for inbreeding avoidance was weak in larger populations because
 inbreeding risk decreased. Therefore, while selection sometimes favored
 alleles underlying inbreeding avoidance or preference, evolution of such
 strategies may be much more restricted and stochastic than is commonly
 presumed.
description: Duthie_Reid_2016_AmNat.tarThis compressed directory contains the 44 files needed to compile the code underlying the paper and run all simulations. Parameter values for simulations are set in the InMult.c file. This code is also publicly available, with additional documentation, on Brad Duthie's GitHub repository: https://github.com/bradduthie/Inbreeding
DOI: 10.5061/dryad.4g48r
title: Data from: Pervasive indirect genetic effects on behavioral development in polymorphic eastern mosquitofish

description: The social environment can dramatically influence development and
 expression of individual behavior. Indirect genetic effects (IGE) arise
 when variation in the social environment depend on genotypic differences
 among social partners. Their role in generating variation and in
 influencing evolutionary dynamics has become increasingly recognized in
 recent years, but less attention has been paid to how indirect genetic
 effects arise during development. Here, we measure IGE during development
 using a discrete natural polymorphism in male coloration and associated
 behaviors in eastern mosquitofish (Gambusia holbrooki). The experiment
 revealed substantial IGE and direct genetic effects on behavior. For some
 behaviors, IGE changed and even reversed direction over the 16 weeks of
 the experiment, indicating important developmental dynamics. Interaction
 between IGE and direct genetic effects for some behaviors indicated that
 melanistic males were less responsive to a genetic change in their social
 environment than were non-melanistic males, suggesting that melanistic
 males were relatively inflexible in their behavior. Alternately, social
 partners might vary less in the behavior they direct toward these males.
 The color morphs differed in mating behavior and in the amount of
 aggressive behavior they received from their social partners, but not in
 direct measures of aggression. These results imply that even apparently
 innate differences between color morphs in behavior could arise as
 indirect effects of differences in behavior of social partners toward
 them. Deducing the developmental and social origins of these indirect
 effects is necessary to understand the maintenance of morphological and
 behavioral polymorphisms in the many species in which they occur.
description: KraftBE_DataThis file contains the raw data. Data for state variables (which have durations) is expressed in milliseconds. Data for behavioral events are expressed as integer counts.
DOI: 10.5061/dryad.2dn85
title: Data from: Adaptive, but not condition-dependent, body shape differences contribute to assortative mating preferences during ecological speciation

description: Assortative mating is critical for reproductive isolation during
 speciation, however, the mechanisms underlying mating preferences are
 often unknown. Assortative mating can be mediated through preferences for
 condition-dependent and adaptive (“magic”) traits, but rigorously testing
 these hypotheses has been impeded by trait covariation in living
 organisms. We used computer-generated models to examine the role of body
 shape in producing association preferences between fish populations
 undergoing ecological speciation in different habitat types. We
 demonstrate that body shape can serve as an adaptive trait (variation in
 head size between populations) and a condition-dependent signal (variation
 in abdominal distention among individuals). Female preferences for stimuli
 varying in only one aspect of body shape uncovered evidence for body shape
 as a magic trait across population pairs, but no evidence for body shape
 serving as a condition-dependent signal. Evolution of preferences only in
 females from one habitat type as well as stronger preferences in sympatric
 non-sulfidic as opposed to allopatric non-sulfidic populations suggests
 that reinforcement may have played a role in producing the observed
 patterns.
description: Greenwayetal2016
 Adaptive, but not condition-dependent, body shape differences contribute
 to assortative mating preferences during ecological speciation Evolution
 DataData used in analyses
 for the manuscript "Adaptive, but not condition-dependent, body shape
 differences contribute to assortative mating preferences during ecological
 speciation"Greenwayetal2016Data.xlsx
DOI: 10.5061/dryad.0dq86
title: Data from: Determinants for adherence to continuous positive airway pressure therapy in obstructive sleep apnea

description: Background: Continuous positive airway pressure (CPAP) therapy is an
 efficacious treatment for patients diagnosed with obstructive sleep apnea
 (OSA). However, there are only few data on long-term adherence. The aim of
 this study is to quantify the extent of non-adherence and describe the
 clinical characteristics. Methods: A retrospective study including 695
 patients with newly diagnosed OSA and prescribed CPAP therapy within an
 inclusion period of 14 months. All patients were offered free of charge
 individually adjusted CPAP therapy. Data on comorbidity, medication, BMI
 and Epworth Sleepiness Score (ESS) were obtained by questionnaires and
 consultation with an otorhinolaryngeal specialist. Results: The median
 follow-up time after initiating CPAP therapy was 3.0 (range 2.4–3.6)
 years. An adherence rate of 89% was found for severe OSA, 71% for moderate
 OSA and 55% for mild OSA. 18% initiated humidification. Patients adherent
 to CPAP had a significantly higher Body Mass Index (BMI), Apnea Hypopnea
 Index (AHI), Oxygen Desaturation Index (ODI) and ESS compared to
 non-adherent patients. Furthermore, adherence was associated with a higher
 frequency of observed interrupted breathing, a less frequent use of
 hypnotic drugs, fewer smokers, and they were more often offered
 humidification. Age, gender and comorbidity were not significantly
 associated with adherence. In a Cox model only AHI (Hazard Ratio (HR)
 0.963, p &lt; 0.001), ESS (HR 0.939, p = 0.001) and smoking (HR 1.576,
 p = 0.022) were independently associated with CPAP non-adherence.
 Conclusions: The severity of OSA, subjective daytime sleepiness and
 smoking status are independently related to adherence to CPAP therapy.
description: PONE-D-17-27542R1Data on adherence to continuous positive airway pressure (CPAP) therapy in 695 patients with obstructive sleep apnea
DOI: 10.15468/dl.qwhfe8
title: Occurrence Download

description: A dataset containing 5092 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyoscyamus niger",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 5092 records from 279 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000928-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.7b191
title: Data from: Relative performance of non-local cultivars and local, wild populations of switchgrass (Panicum virgatum) in competition experiments

description: The possibility of increased invasiveness in cultivated varieties of
 native perennial species is a question of interest in biofuel risk
 assessment. Competitive success is a key factor in the fitness and
 invasive potential of perennial plants, and thus the large-scale release
 of high-yielding biomass cultivars warrants empirical comparisons with
 local conspecifics in the presence of competitors. We evaluated the
 performance of non-local cultivars and local wild biotypes of the
 tallgrass species Panicum virgatum L. (switchgrass) in competition
 experiments during two growing seasons in Ohio and Iowa. At each location,
 we measured growth and reproductive traits (plant height, tiller number,
 flowering time, aboveground biomass, and seed production) of four
 non-locally sourced cultivars and two locally collected wild biotypes.
 Plants were grown in common garden experiments under three types of
 competition, referred to as none, moderate (with Schizachyrium scoparium),
 and high (with Bromus inermis). In both states, the two “lowland”
 cultivars grew taller, flowered later, and produced between 2x and 7.5x
 more biomass and between 3x and 34x more seeds per plant than local wild
 biotypes, while the other two cultivars were comparable to wild biotypes
 in these traits. Competition did not affect relative differences among
 biotypes, with the exception of shoot number, which was more similar among
 biotypes under high competition. Insights into functional differences
 between cultivars and wild biotypes are crucial for developing biomass
 crops while mitigating the potential for invasiveness. Here, two of the
 four cultivars generally performed better than wild biotypes, indicating
 that these biotypes may pose more of a risk in terms of their ability to
 establish vigorous feral populations in new regions outside of their area
 of origin. Our results support an ongoing assessment of switchgrass
 cultivars developed for large-scale planting for biofuels.
description: 2012_common garden
 datatwo tabs provide data
 collected in 2012 from two common garden experiments2012_data.xlsx
DOI: 10.5061/dryad.2rc5d
title: Data from: Distance-dependent aposematism and camouflage in the cinnabar moth caterpillar (Tyria jacobaeae Erebidae)

description: Defended prey often use distinctive, conspicuous, colours to advertise
 their unprofitability to potential predators (aposematism). These warning
 signals are frequently made up of salient, high contrast, stripes which
 have been hypothesised to increase the speed and accuracy of predator
 avoidance learning. Limitations in predator visual acuity, however, mean
 that these patterns cannot be resolved when viewed from a distance, and
 adjacent patches of colour will blend together (pattern blending). We
 investigated how saliency changes at different viewing distances in the
 toxic and brightly coloured cinnabar moth caterpillar (Tyria jacobaeae).
 We found that although the caterpillars’ orange-and-black stripes are
 highly salient at close-range, when viewed from a distance the colours
 blend together to match closely those of the background. Cinnabar
 caterpillars therefore produce a distance-dependent signal combining
 salient aposematism with targeted background matching camouflage, without
 necessarily compromising the size or saturation of their aposematic
 signal.
description: Visual model
 dataVisual model output for
 the high and low spatial resolutioncolourdata.txt
DOI: 10.5061/dryad.3r7q3
title: Data from: Neglected seed dispersers: endozoochory by Javan lutungs (Trachypithecus auratus) in Indonesia

description: Leaf monkeys are known to be leaf eaters, and thus, their potential role
 as seed dispersers has been neglected. However, they do also feed on
 fruits. To examine the role of leaf monkeys as endozoochorous seed
 dispersers, we studied the Javan lutung (Trachypithecus auratus) in
 Indonesia. We compared multiple aspects of seed dispersal processes
 (amount and diversity of seeds ingested, dispersal distance, and
 germination rate) of lutungs with that of the sympatric long-tailed
 macaque (Macaca fascicularis). Over the study period, 54 percent of the
 lutung feces contained intact seeds, which was equivalent to the macaque
 feces contained seeds (62%). Seeds of at least six plant species were
 detected in the lutung feces, which was less than those found in the
 macaque feces (&gt;19 plant species). The main species of seeds
 defecated by both lutungs and macaques was Ficus spp. (seed size: 0.7 mm).
 Seed shadow, estimated from travel distance (range: 1–299 m) and gut
 passage rate (24–96 h), had a unimodal-distribution with a peak at 51–100
 m, and was shorter than that reported in published accounts of macaques
 and other similar and smaller sized frugivores. Finally, germination rates
 of Ficus spp. seeds ingested by both lutungs and macaques were lower than
 that of the control seeds. These results imply that the dispersal
 effectiveness of lutungs would be lower than that of the sympatric primate
 frugivores. However, at a population level, lutungs could play a
 significant role as seed dispersers for the small-seeded species, and
 therefore, more research into their frugivorous habits is warranted.
description: Table_S1_161102Table_S2_161102FigureS1_161219
DOI: 10.5061/dryad.0b58t3v
title: Data from: Clinical correlation between erectile function and ejaculatory function in the Czech male population

description: Introduction The objective of this study is to determine whether there is
 any relationship between erectile function (EF) and ejaculatory function
 (EJF), with the aim of improving care protocols in the clinical practice.
 Materials and methods A total of 1004 Czech males between 15 and 84 years
 (42.77 ± 17.556 years) completed a sexual behavior questionnaire. A
 correlational, between-subjects design was used, where a 5-item
 abbreviated form of the International Index of Erectile Function (IIEF-5)
 was used to measure EF, which produces a value between 5 and 25. Values
 greater than 21 are considered as a normal function. EJF was measured
 using the Index of Premature Ejaculation (IPE). IPE has three domains
 (Control, Satisfaction and Distress) with scores from 0 to 100, higher
 ones are associated with a greater control and satisfaction, and lower
 anxiety, all related to the perception of ejaculation. A linear regression
 analysis was performed and a statistics model was proposed for each domain
 with EF as a dependent variable and the specific EF domain as a predictor.
 The Pearson correlation coefficient was also calculated for these
 variables. Results EF scale mean value was 19,44 ± 2,368, control domain
 mean value was 80,98 ± 18,032; sexual satisfaction domain mean value was
 78,07 ± 21,454; and distress domain mean value was 74,85 ± 34,498. The
 results indicate that all linear regression models between EF and each of
 the domain of EJF and the Pearson coefficients (r) are statistically
 significant (p&lt;0.05). Control r=0,478, p=.001, Satisfaction
 r=0,405, p=.001 and Distress r=0,324, p=.002. Conclusions Higher levels of
 EF are associated with a better control and sexual satisfaction, and less
 distress about ejaculation. This link should be considered for developing
 new clinical practice guidelines for erectile dysfunction and premature
 ejaculation.
description: Clinical Correlation
 between Erectile Function and Ejaculatory Function in the Czech Male
 PopulationWhen using this data,
 please cite the original publication. SAV is a file extension used for the
 saved date of SPSS (Statistical Package for the Social Sciences). SAV
 files contain binary data which can only be used on the platform that
 created the file. If migrating the file to another platform, it would have
 to be converted into the appropriate format. Please note that the
 variables education and relationship status have been removed from the
 original dataset in order to protect participant
 identity.PONE-D-17-40382-V2.sav
DOI: 10.5061/dryad.h44t1
title: Data from: The evolutionary consequences of blood-stage vaccination on the rodent malaria Plasmodium chabaudi

description: Malaria vaccine developers are concerned that antigenic escape will erode
 vaccine efficacy. Evolutionary theorists have raised the possibility that
 some types of vaccine could also create conditions favoring the evolution
 of more virulent pathogens. Such evolution would put unvaccinated people
 at greater risk of severe disease. Here we test the impact of vaccination
 with a single highly purified antigen on the malaria parasite Plasmodium
 chabaudi evolving in laboratory mice. The antigen we used, AMA-1, is a
 component of several candidate malaria vaccines currently in various
 stages of trials in humans. We first found that a more virulent clone was
 less readily controlled by AMA-1-induced immunity than its less virulent
 progenitor. Replicated parasites were then serially passaged through
 control or AMA-1 vaccinated mice and evaluated after 10 and 21 rounds of
 selection. We found no evidence of evolution at the ama-1 locus. Instead,
 virulence evolved; AMA-1-selected parasites induced greater anemia in
 naïve mice than both control and ancestral parasites. Our data suggest
 that recombinant blood stage malaria vaccines can drive the evolution of
 more virulent malaria parasites.
description: Figure 4A
 redcellsovertimeExcel version of file
 used to create Fig 4AFigure 4B&D
 vaccineparasiteinteractionExcel file of data used
 to create Figs 4B&DFigure 4C
 parasitedensovertimeExcel file used to
 create file 4CFigure 4 code
 (vb10)R code used to produce
 Figure 4
DOI: 10.5061/dryad.cm184
title: Data from: Horizontal and vertical movements of Caribbean reef sharks (Carcharhinus perezi): conservation implications of limited migration in a marine sanctuary

description: Despite the ecological and economic importance of the Caribbean reef shark
 (Carcharhinus perezi), little data exist regarding the movements and
 habitat use of this predator across its range. We deployed 11 pop-up
 satellite archival tags on Caribbean reef sharks captured in the northeast
 Exuma Sound, The Bahamas, to assess their horizontal and vertical
 movements throughout the water column. Sharks showed high site fidelity to
 The Bahamas suggesting Bahamian subpopulations remain protected within the
 Bahamian Shark Sanctuary. Depth data indicate that Caribbean reef sharks
 spent a significant proportion (72–91%) of their time above 50 m in narrow
 vertical depth bands, which varied considerably on an individual basis.
 This may be indicative of high site fidelity to specific bathymetric
 features. Animals exhibited three broadly categorized sporadic off-bank
 excursions (more than 50 m excursions) down to a depth of 436.1 m, which
 were more frequent during the night. These deeper excursions during night
 may be indicative of foraging in relation to prey on mesophotic reefs, as
 well as diel-vertically migrating prey from the deeper meso- and
 bathypelagic zones. These vertical movements suggest that Caribbean reef
 sharks can be significant vectors of ecosystem connectivity further
 warranting holistic multi-system management and conservation approaches.
description: DepthTime series depth data
 for all Caribbean reef sharksFiltered_TracksFiltered tracks with geolocations for all Caribbean reef sharksTemperatureTime series temperature data for all Caribbean reef sharks