cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.707339.v1
title: The Continuous Model of Culture: Modernity Decline—a Eurocentric Bias? An Attempt to Introduce an Absolute Value into a Model of Culture

description: This paper means to demonstrate the theoretical-and-methodological potential of a particular pattern of thought about culture. Employing an end-means and absolute value plus concept of reality approach, the continuous model of culture aims to embrace from one holistic standpoint various concepts and debates of the modern human, social, and political sciences. The paper revisits the fact versus value, nature versus culture, culture versus structure, agency versus structure, and economics versus politics debates and offers the concepts of the rule of law, state capitalism, a dialectical model of progress, and interpretative qualitative research, as well as of cultural diffusion, autonomy, alienation, and individuality. This model distinguishes between the ideal-symbolical and the instrumental functions of culture, sees culture as being sewn from universal binaries, and provides a certain understanding of the cognitive function of a value judgment, with positivism so far vague about the topic. It, too, suggests an extra method for investigating culture(s): the comparative literature study of culture(s) enables social science to view literature as its potential in-depth interviewee—a case for arguing for a certain conception of interdisciplinarity as well. In addition, it predicts that cultural particularism or individuality remains an essential factor of human existence. Analyzing the issue of Eurocentrism in social science, the model finds modernity’s concept of reality to be involved in “methodological” intellectualistic reductionism, characterizing it since the empiricism/rationalism origination. Systematically confusing the universal oppositions in a Eurocentric manner, intellectualism becomes a contributing factor in unfolding post-modernity. Within this Article Introduction Sociocultural Evolution as a Eurocentric “Epic,” or the Far Side of the Moon The Continuous Model of Culture--an Introduction of an Absolute Value in Social Theory “Understanding Chinese Society”: An Example for the Politics of Culture The Rule of Law Cultural Values in Quantitative and Qualitative Research Interdisciplinarity Culture as a Process of Making A Meeting with the Sphinx Summary DOI10.1007/s10746-013-9274-0 journal Human Studies
DOI: 10.6084/m9.figshare.707329
title: Sample Datasets

description: Supplementary file for the article " Two-dimensional data binning for the analysis of genome architecture in filamentous plant pathogens and other eukaryotes". This archive includes: The “Mygtf.gtf” file containing the final transcript calls for P. infestans genome version 2.4. The original file is available at http://www.broadinstitute.org/annotation/genome/phytophthora_infestans/MultiDownloads.html. The “RXLR_FIRs.csv” file containing intergenic regions length for RXLR effector genes only. The “Tom_expression.csv” file containing gene induction values at 2 days post inoculation on tomato.
DOI: 10.6084/m9.figshare.707335
title: Gaussian Job Archive for C33H31N2O2PS2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.707354.v3
title: Diagram of Abbreviated Tophat/Cufflinks Inputs and Outputs

description: This figure demonstrates the complexities of a typical RNA-seq experiment as analyzed with the "Tuxedo Protocol". It models a fairly simple two condition experiment with each condition having three replications. It is "abbreviated" in that it only displays the output files that will be used in the next step for all steps except the 'cuffdiff' step. The complete output of 'cuffdiff' is included to demonstrate the final challenge of integrating the data which exists in multiple cross-referenced files.
DOI: 10.6084/m9.figshare.707329.v1
title: Sample Datasets

description: Supplementary file for the article " Two-dimensional data binning for the analysis of genome architecture in filamentous plant pathogens and other eukaryotes". This archive includes: The “Mygtf.gtf” file containing the final transcript calls for P. infestans genome version 2.4. The original file is available at http://www.broadinstitute.org/annotation/genome/phytophthora_infestans/MultiDownloads.html. The “RXLR_FIRs.csv” file containing intergenic regions length for RXLR effector genes only. The “Tom_expression.csv” file containing gene induction values at 2 days post inoculation on tomato.
DOI: 10.6084/m9.figshare.707335.v1
title: Gaussian Job Archive for C33H31N2O2PS2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.707339.v2
title: The Continuous Model of Culture: Modernity Decline—a Eurocentric Bias? An Attempt to Introduce an Absolute Value into a Model of Culture

description: This paper means to demonstrate the theoretical-and-methodological potential of a particular pattern of thought about culture. Employing an end-means and absolute value plus concept of reality approach, the continuous model of culture aims to embrace from one holistic standpoint various concepts and debates of the modern human, social, and political sciences. The paper revisits the fact versus value, nature versus culture, culture versus structure, agency versus structure, and economics versus politics debates and offers the concepts of the rule of law, state capitalism, a dialectical model of progress, and interpretative qualitative research, as well as of cultural diffusion, autonomy, alienation, and individuality. This model distinguishes between the ideal-symbolical and the instrumental functions of culture, sees culture as being sewn from universal binaries, and provides a certain understanding of the cognitive function of a value judgment, with positivism so far vague about the topic. It, too, suggests an extra method for investigating culture(s): the comparative literature study of culture(s) enables social science to view literature as its potential in-depth interviewee—a case for arguing for a certain conception of interdisciplinarity as well. In addition, it predicts that cultural particularism or individuality remains an essential factor of human existence. Analyzing the issue of Eurocentrism in social science, the model finds modernity’s concept of reality to be involved in “methodological” intellectualistic reductionism, characterizing it since the empiricism/rationalism origination. Systematically confusing the universal oppositions in a Eurocentric manner, intellectualism becomes a contributing factor in unfolding post-modernity. Within this Article Introduction Sociocultural Evolution as a Eurocentric “Epic,” or the Far Side of the Moon The Continuous Model of Culture--an Introduction of an Absolute Value in Social Theory “Understanding Chinese Society”: An Example for the Politics of Culture The Rule of Law Cultural Values in Quantitative and Qualitative Research Interdisciplinarity Culture as a Process of Making A Meeting with the Sphinx Summary DOI10.1007/s10746-013-9274-0 journal Human Studies
DOI: 10.6084/m9.figshare.707326
title: getFeat2b R function

description: Supplementary file for the article " Two-dimensional data binning for the analysis of genome architecture in filamentous plant pathogens and other eukaryotes". This is a R function, modified from getFeat.R by Thomas Girke. Used to compute the length of intergenic regions in a genome.
DOI: 10.6084/m9.figshare.707327
title: filled.contour3 R function

description: This is a supplementary file to the article "Two-dimensional data binning for the analysis of genome architecture in filamentous plant pathogens and other eukaryotes". This R function is used to produce modified filled contour graphs. This is a modified version of the “filled.contour” function contributed by Ian Taylor, Carey McGilliard and Bridget Ferris.
DOI: 10.6084/m9.figshare.707328
title: Calculate FIR length perl script

description: Supplementary file for the article " Two-dimensional data binning for the analysis of genome architecture in filamentous plant pathogens and other eukaryotes". Script for the calculation of intergenic region length in perl.
DOI: 10.6084/m9.figshare.707354.v4
title: Diagram of Abbreviated Tophat/Cufflinks Inputs and Outputs

description: This figure demonstrates the complexities of a typical RNA-seq experiment as analyzed with the "Tuxedo Protocol". It models a fairly simple two condition experiment with each condition having three replications. It is "abbreviated" in that it only displays the output files that will be used in the next step for all steps except the 'cuffdiff' step. The complete output of 'cuffdiff' is included to demonstrate the final challenge of integrating the data which exists in multiple cross-referenced files.
DOI: 10.6084/m9.figshare.707326.v1
title: getFeat2b R function

description: Supplementary file for the article " Two-dimensional data binning for the analysis of genome architecture in filamentous plant pathogens and other eukaryotes". This is a R function, modified from getFeat.R by Thomas Girke. Used to compute the length of intergenic regions in a genome.
DOI: 10.6084/m9.figshare.707354.v6
title: Diagram of Abbreviated Tophat/Cufflinks Inputs and Outputs

description: This figure demonstrates the complexities of a typical RNA-seq experiment as analyzed with the "Tuxedo Protocol". It models a fairly simple two condition experiment with each condition having three replications. It is "abbreviated" in that it only displays the output files that will be used in the next step for all steps except the 'cuffdiff' step. The complete output of 'cuffdiff' is included to demonstrate the final challenge of integrating the data which exists in multiple cross-referenced files. Colors: <strong>Dark Blue</strong> - Inputs/Outputs associated with Condition Zero <strong>Light Blue</strong> - Inputs/Outputs associated with Condition One <strong>Grey</strong> - Inputs/Outputs associated with Condition Zero AND Condition One <strong>Green</strong> - Inputs Specific to the Reference Genome <strong>Gold</strong> - Program Calls
DOI: 10.6084/m9.figshare.707325
title: getFeat2 R function

description: Supplementary file for the article " Two-dimensional data binning for the analysis of genome architecture in filamentous plant pathogens and other eukaryotes". This is a R function, modified from getFeat.R by Thomas Girke. Used to compute the length of intergenic regions in a genome.
DOI: 10.6084/m9.figshare.707339.v3
title: The Continuous Model of Culture: Modernity Decline—a Eurocentric Bias? An Attempt to Introduce an Absolute Value into a Model of Culture

description: This paper means to demonstrate the theoretical-and-methodological potential of a particular pattern of thought about culture. Employing an end-means and absolute value plus concept of reality approach, the continuous model of culture aims to embrace from one holistic standpoint various concepts and debates of the modern human, social, and political sciences. The paper revisits the fact versus value, nature versus culture, culture versus structure, agency versus structure, and economics versus politics debates and offers the concepts of the rule of law, state capitalism, a dialectical model of progress, and interpretative qualitative research, as well as of cultural diffusion, autonomy, alienation, and individuality. This model distinguishes between the ideal-symbolical and the instrumental functions of culture, sees culture as being sewn from universal binaries, and provides a certain understanding of the cognitive function of a value judgment, with positivism so far vague about the topic. It, too, suggests an extra method for investigating culture(s): the comparative literature study of culture(s) enables social science to view literature as its potential in-depth interviewee—a case for arguing for a certain conception of interdisciplinarity as well. In addition, it predicts that cultural particularism or individuality remains an essential factor of human existence. Analyzing the issue of Eurocentrism in social science, the model finds modernity’s concept of reality to be involved in “methodological” intellectualistic reductionism, characterizing it since the empiricism/rationalism origination. Systematically confusing the universal oppositions in a Eurocentric manner, intellectualism becomes a contributing factor in unfolding post-modernity. Within this Article Introduction Sociocultural Evolution as a Eurocentric “Epic,” or the Far Side of the Moon The Continuous Model of Culture--an Introduction of an Absolute Value in Social Theory “Understanding Chinese Society”: An Example for the Politics of Culture The Rule of Law Cultural Values in Quantitative and Qualitative Research Interdisciplinarity Culture as a Process of Making A Meeting with the Sphinx Summary DOI10.1007/s10746-013-9274-0 journal Human Studies
DOI: 10.6084/m9.figshare.707354.v5
title: Diagram of Abbreviated Tophat/Cufflinks Inputs and Outputs

description: This figure demonstrates the complexities of a typical RNA-seq experiment as analyzed with the "Tuxedo Protocol". It models a fairly simple two condition experiment with each condition having three replications. It is "abbreviated" in that it only displays the output files that will be used in the next step for all steps except the 'cuffdiff' step. The complete output of 'cuffdiff' is included to demonstrate the final challenge of integrating the data which exists in multiple cross-referenced files. Colors: <strong>Dark Blue</strong> - Inputs/Outputs associated with Condition Zero <strong>Light Blue</strong> - Inputs/Outputs associated with Condition One <strong>Aqua</strong> - Inputs/Outputs associated with Condition Zero AND Condition One <strong>Green</strong> - Inputs Specific to the Reference Genome <strong>Gold</strong> - Program Calls
DOI: 10.6084/m9.figshare.707327.v2
title: filled.contour3 R function

description: This is a supplementary file to the article "Two-dimensional data binning for the analysis of genome architecture in filamentous plant pathogens and other eukaryotes". This R function is used to produce modified filled contour graphs. This is a modified version of the “filled.contour” function contributed by Ian Taylor, Carey McGilliard and Bridget Ferris.
DOI: 10.6084/m9.figshare.707327.v1
title: filled.contour3 R function

description: This is a supplementary file to the article "Two-dimensional data binning for the analysis of genome architecture in filamentous plant pathogens and other eukaryotes". This R function is used to produce modified filled contour graphs. This is a modified version of the “filled.contour” function contributed by Ian Taylor, Carey McGilliard and Bridget Ferris.
DOI: 10.6084/m9.figshare.707308
title: Gaussian Job Archive for C33H31N2O2PS2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.707309
title: Gaussian Job Archive for C33H31N2O2PS2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.707312
title: Gaussian Job Archive for C15H16N2O2S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.707325.v1
title: getFeat2 R function

description: Supplementary file for the article " Two-dimensional data binning for the analysis of genome architecture in filamentous plant pathogens and other eukaryotes". This is a R function, modified from getFeat.R by Thomas Girke. Used to compute the length of intergenic regions in a genome.
DOI: 10.6084/m9.figshare.707309.v1
title: Gaussian Job Archive for C33H31N2O2PS2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.707312.v1
title: Gaussian Job Archive for C15H16N2O2S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.707308.v1
title: Gaussian Job Archive for C33H31N2O2PS2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.707083
title: Summary data for the coral reef baselines survey

description: The summary data for an online survey about what reef scientists think are the baseline values for coral and macroalgal cover.
DOI: 10.6084/m9.figshare.707071
title: Spatial GC content plot for Scaffolds in TGAC Chalara fraxinea assembly

description: Spatial GC content plot for scaffolds &gt; 250 kbp in https://github.com/ash-dieback-crowdsource/data/tree/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/assemblies/gDNA/KW1_assembly_version1 calculated using IsoPlotter2.3 (Elhaik and Graur doi:10.1093/nar/gkq532) with domain size of 3008
DOI: 10.6084/m9.figshare.707073
title: Gaussian Job Archive for C4H6NO3S(1-)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.707074
title: Gaussian Job Archive for C4H6NO3S(1-)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.707074.v1
title: Gaussian Job Archive for C4H6NO3S(1-)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.707069
title: Gaussian Job Archive for C4H6NO3S(1-)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.707068
title: Gaussian Job Archive for C4H6NO3S(1-)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.707073.v1
title: Gaussian Job Archive for C4H6NO3S(1-)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.707082.v1
title: Individual differences in local and global perceptual organization

description: Figure to appear in: de-Wit, L. & Wagemans, J. (2013). Individual differences in local and global perceptual organization. In J. Wagemans (Ed.), Oxford Handbook of Perceptual Organization (in press). Oxford, U.K.: Oxford University Press. Figure legend: Figure 1. a) Embedded Figures Test: the stimulus on the left has to be identified in the embedded context to the right, b) Navon Letters: the local and global letters are illustrated in direct conflict, c) Ebbinghaus Illusion: the perceived size of the central dot is influenced by its context, d) Mooney Figure and Original: a novel 2 tone Mooney image is illustrated on the left based on the original to the right, e) Ponzo Illusion: the perceived size of the two dots is influenced by their context, f) Block Design: subjects have to replicate a simple pattern with 3D cubes, critical for the local global literature is the difference between the standard version on the left and the segmented version on the right, g) Collinear Contour: The co-alignment of a string of Gabors creates the impression of a closed shape (generated using GERT, REF, h) Proximity Dot Lattice: The slight difference in spacing between the dots creates the impression of a row of oriented lines.
DOI: 10.6084/m9.figshare.707067
title: Gaussian Job Archive for C4H6NO3S(1-)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.707068.v1
title: Gaussian Job Archive for C4H6NO3S(1-)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.707069.v1
title: Gaussian Job Archive for C4H6NO3S(1-)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.707082.v2
title: Figure1_ndividual differences in local and global perceptual organization

description: Figure to appear in: de-Wit, L. & Wagemans, J. (2013). Individual differences in local and global perceptual organization. In J. Wagemans (Ed.), Oxford Handbook of Perceptual Organization (in press). Oxford, U.K.: Oxford University Press. Figure legend: Figure 1. a) Embedded Figures Test: the stimulus on the left has to be identified in the embedded context to the right, b) Navon Letters: the local and global letters are illustrated in direct conflict, c) Ebbinghaus Illusion: the perceived size of the central dot is influenced by its context, d) Mooney Figure and Original: a novel 2 tone Mooney image is illustrated on the left based on the original to the right, e) Ponzo Illusion: the perceived size of the two dots is influenced by their context, f) Block Design: subjects have to replicate a simple pattern with 3D cubes, critical for the local global literature is the difference between the standard version on the left and the segmented version on the right, g) Collinear Contour: The co-alignment of a string of Gabors creates the impression of a closed shape (generated using GERT, REF, h) Proximity Dot Lattice: The slight difference in spacing between the dots creates the impression of a row of oriented lines.
DOI: 10.6084/m9.figshare.707066
title: Gaussian Job Archive for C4H6NO3S(1-)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.15156/bio/sh0890240.10fu
title: SH0890240.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0890241.10fu
title: SH0890241.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.