cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.105155.v2
title: Pathway Analysis: Adding Functional Context to High-Throughput Results

description: Slides on pathway analysis given to the Nataro & Lazo labs at UVA in November 2012.
DOI: 10.6084/m9.figshare.105150
title: Iris

description: Iris is the Virtual Astronomical Observatory SED Analysis Tool
DOI: 10.6084/m9.figshare.105152.v1
title: How do drugs work? - and why it matters

description: Infographic describing the future challenges of non-communicable disease and how we might reverse the failure of new medicines in clinical trials via understanding the fundamental, but little understood parameter of drug (pharmacological) efficacy. Thank you to Ivan Gajos the Graphic Designer for his superb rendering of this idea.
DOI: 10.6084/m9.figshare.105150.v1
title: Iris

description: Iris is the Virtual Astronomical Observatory SED Analysis Tool
DOI: 10.6084/m9.figshare.105124
title: Gaussian Job Archive for C6H9BrO2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104965
title: Transmission electron microscopy of a vma9 mutant in yeast

description: Electron micrographs of <em>vma9</em> (V-ATPase) mutant cells.
DOI: 10.6084/m9.figshare.105054
title: Transmission electron microscopy of Zoloft-treated wildtype yeast

description: Electron micrographs of wildtype yeast cells treated with 60µM Zoloft.
DOI: 10.6084/m9.figshare.105115
title: Transmission electron microscopy of Zoloft-treated chc1 mutant yeast

description: Electron micrographs of <em>chc1</em> mutant yeast cells treated with 60µM Zoloft.
DOI: 10.6084/m9.figshare.105054.v1
title: Transmission electron microscopy of Zoloft-treated wildtype yeast

description: Electron micrographs of wildtype yeast cells treated with 60µM Zoloft.
DOI: 10.6084/m9.figshare.105124.v1
title: Gaussian Job Archive for C6H9BrO2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104794
title: Transmission electron microscopy of a prototropic yeast strain

description: Electron micrographs of prototrophic yeast cells.
DOI: 10.6084/m9.figshare.104919
title: Tranmission electron microscopy of a swa2 mutant in yeast

description: Electron micrographs of <em>swa2</em> mutant cells.
DOI: 10.6084/m9.figshare.104965.v1
title: Transmission electron microscopy of a vma9 mutant in yeast

description: Electron micrographs of <em>vma9</em> (V-ATPase) mutant cells.
DOI: 10.6084/m9.figshare.105115.v1
title: Transmission electron microscopy of Zoloft-treated chc1 mutant yeast

description: Electron micrographs of <em>chc1</em> mutant yeast cells treated with 60µM Zoloft.
DOI: 10.6084/m9.figshare.104875
title: Transmission electron microscopy of a sac1 mutant in yeast

description: Electron micrographs of <em>sac1</em> mutant cells.
DOI: 10.6084/m9.figshare.104735
title: Transmission electron microscopy of a drs2 mutant in yeast

description: Electron micrographs of <em>drs2</em> mutant yeast cells.
DOI: 10.6084/m9.figshare.104794.v1
title: Transmission electron microscopy of a prototropic yeast strain

description: Electron micrographs of prototrophic yeast cells.
DOI: 10.6084/m9.figshare.104875.v1
title: Transmission electron microscopy of a sac1 mutant in yeast

description: Electron micrographs of <em>sac1</em> mutant cells.
DOI: 10.6084/m9.figshare.104734
title: Gaussian Job Archive for C12H9NO2S2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104735.v1
title: Transmission electron microscopy of a drs2 mutant in yeast

description: Electron micrographs of <em>drs2</em> mutant yeast cells.
DOI: 10.6084/m9.figshare.104733
title: Gaussian Job Archive for C11H9NO2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104734.v1
title: Gaussian Job Archive for C12H9NO2S2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104732
title: Gaussian Job Archive for C12H9NO2S2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104733.v1
title: Gaussian Job Archive for C11H9NO2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104730
title: Gaussian Job Archive for C10H5NO2S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104731
title: Gaussian Job Archive for C11H9NO2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104919.v1
title: Electron microscopy of a swa2 mutant in yeast

description: Electron micrographs of swa2 mutant cells.
DOI: 10.6084/m9.figshare.104729
title: Gaussian Job Archive for C10H5NO2S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104731.v1
title: Gaussian Job Archive for C11H9NO2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104732.v1
title: Gaussian Job Archive for C12H9NO2S2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104727
title: Gaussian Job Archive for C10H8N2O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104728
title: Gaussian Job Archive for C5H6N2O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104730.v1
title: Gaussian Job Archive for C10H5NO2S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104725
title: Gaussian Job Archive for C5H4O3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104726
title: Gaussian Job Archive for C10H8N2O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104727.v1
title: Gaussian Job Archive for C10H8N2O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104728.v1
title: Gaussian Job Archive for C5H6N2O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104729.v1
title: Gaussian Job Archive for C10H5NO2S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104726.v1
title: Gaussian Job Archive for C10H8N2O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104725.v1
title: Gaussian Job Archive for C5H4O3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104722
title: Gaussian Job Archive for C4H3NO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104723
title: Gaussian Job Archive for C5H4O2S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104724
title: Gaussian Job Archive for C5H5NO2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104721
title: Gaussian Job Archive for C11H9NO2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104722.v1
title: Gaussian Job Archive for C4H3NO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104723.v1
title: Gaussian Job Archive for C5H4O2S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104719
title: Gaussian Job Archive for C12H11NO2S2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104721.v1
title: Gaussian Job Archive for C11H9NO2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104717
title: Fishery stock assessment values of natural mortality and steepness

description: This dataset contains information on natural mortality and steepness values for 80 stock fishery stock assessments. The database denotes whether these values were fixed in the assessments, or estimated within a model.
DOI: 10.6084/m9.figshare.104718
title: Gaussian Job Archive for C12H11NO2S2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104720
title: Gaussian Job Archive for C7H7NO2S2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104724.v1
title: Gaussian Job Archive for C5H5NO2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104719.v1
title: Gaussian Job Archive for C12H11NO2S2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104720.v1
title: Gaussian Job Archive for C7H7NO2S2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104693
title: Gaussian Job Archive for C6H9BrO2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104696
title: Obiegi kultury

description: Dane z kwestionariusza oraz badania pilotażowego przeprowadzonych w ramach projektu "Obiegi kultury".
DOI: 10.6084/m9.figshare.104717.v1
title: Fishery stock assessment values of natural mortality and steepness

description: This dataset contains information on natural mortality and steepness values for 80 stock fishery stock assessments. The database denotes whether these values were fixed in the assessments, or estimated within a model.
DOI: 10.6084/m9.figshare.104718.v1
title: Gaussian Job Archive for C12H11NO2S2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104696.v1
title: Obiegi kultury

description: Dane z kwestionariusza oraz badania pilotażowego przeprowadzonych w ramach projektu "Obiegi kultury".
DOI: 10.6084/m9.figshare.104693.v1
title: Gaussian Job Archive for C6H9BrO2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104689.v1
title: Phylogenetic Maximum Likelihood trees of the PYG and RIN gene families

description: Published in: Ocampo Daza D, Sundström G, Bergqvist CA, Larhammar D. The evolution of vertebrate somatostatin receptors and their gene regions involves extensive chromosomal rearrangements. BMC Evolutionary Biology 2012, 12:231 doi:10.1186/1471-2148-12-231. Please refer to this article if using this figure. <strong>Figure 2 Phylogenetic Maximum Likelihood trees of the PYG and RIN gene families.</strong><br>The glycogen phosphorylase (PYG) and Ras and Rab interactor (RIN) gene families are<br>neighboring families of the <em>SSTR1, -4</em> and <em>-6</em> chromosomal regions. Monophyletic subtype<br>clusters including both tetrapod and teleost sequences are indicated by bars to the right.<br>Chromosomal or genomic scaffold assignments of the family members are indicated next to<br>species names. Lowercase a and b are used to distinguish sequences located on the same<br>chromosomes. Branch support values (bootstrap replicates) for deep divergences are shown at<br>the nodes. The trees were rooted with the identified fruit fly sequences. All neighboring gene<br>family trees for the <em>SSTR1, -4</em> and <em>-6</em>-bearing regions, including NJ analyses and all branch<br>support values, are shown in Figures S4-S20 (see Additional file 5).
DOI: 10.6084/m9.figshare.104690.v1
title: Phylogenetic Maximum Likelihood tree of the somatostatin receptor gene family.

description: Published in: Ocampo Daza D, Sundström G, Bergqvist CA, Larhammar D. <em>The evolution of vertebrate somatostatin receptors and their gene regions involves extensive chromosomal rearrangements.</em> BMC Evolutionary Biology 2012, 12:231 doi:10.1186/1471-2148-12-231 <strong>Figure 1 Phylogenetic Maximum Likelihood tree of the somatostatin receptor gene</strong><br><strong>family.</strong> The topology is supported by a non-parametric bootstrap test with 100 replicates as<br>well as an SH-like approximate likelihood ratio test (aLRT). The tree is rooted with the<br>human kisspeptin receptor 1 sequence (not shown). Branch support (bootstrap replicates) for<br>deep divergences is shown at the nodes. All branch support values are shown in Figure S1<br>(bootstrap replicates) and Figure S2 (aLRT) (see Additional file 2). The phylogenetic tree<br>shows six well-supported subtype clusters, with the somatostatin receptor subtypes <em>SSTR2, -3</em><br>and <em>-5</em> forming one ancestral branch and the <em>SSTR1, -4</em> and <em>-6</em> receptor subtypes forming one<br>ancestral branch. This phylogenetic analysis supports the emergence of all six subtypes early<br>in vertebrate evolution, with the subsequent loss of <em>SSTR4</em> in ray-finned fishes, before the<br>divergence of the spotted gar and teleost lineages, and of <em>SSTR6</em> in the tetrapod lineage. All<br>six subtypes could be identified in the coelacanth genome. A seventh <em>SSTR2</em>-like sequence,<br>called <em>SSTRX</em> in the tree, could also be identified on the same genomic scaffold in the<br>coelacanth genome (see Additional file 1, Supplemental note 1). There are well-supported<br>teleost-specific duplicate branches of <em>SSTR2, -3</em> and <em>-5</em>, although all could not be identified in<br>all teleost genomes. These duplicates have been named <em>a</em> and <em>b</em> based on the phylogenetic<br>analysis. There is a third <em>SSTR3</em> sequence in the green puffer, called <em>SSTR3c</em> in the tree.
DOI: 10.6084/m9.figshare.104687.v1
title: Phylogenetic Maximum Likelihood trees of the FNG and FSCN gene families

description: Published in: Ocampo Daza D, Sundström G, Bergqvist CA, Larhammar D. The evolution of vertebrate somatostatin receptors and their gene regions involves extensive chromosomal rearrangements. BMC Evolutionary Biology 2012, 12:231 doi:10.1186/1471-2148-12-231. Please refer to this article if using this figure. <strong>Figure 4 Phylogenetic Maximum Likelihood trees of the FNG and FSCN gene families. </strong>The fringe homolog (FNG) and fascin homolog 1 and 2 (FSCN) gene families are neighboring gene families of the <em>SSTR2, -3</em> and <em>-5</em> chromosomal regions. Phylogenetic<br>methods, monophyletic clusters and leaf names as in Figure 2. All neighboring gene family trees for the <em>SSTR2, -3</em> and <em>-5</em>-bearing regions, including NJ analyses and all branch support values, are shown in Figure S21-S50 (see Additional file 6).
DOI: 10.6084/m9.figshare.104677
title: Gaussian Job Archive for C6H9BrO2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104685.v1
title: Evolutionary scenario for the vertebrate SSTR gene-bearing chromosome regions

description: Published in: Ocampo Daza D, Sundström G, Bergqvist CA, Larhammar D. The evolution of vertebrate somatostatin receptors and their gene regions involves extensive chromosomal rearrangements. BMC Evolutionary Biology 2012, 12:231 doi:10.1186/1471-2148-12-231. Please refer to this article if using this figure. <strong>Figure 6 Evolutionary scenario for the vertebrate SSTR gene-bearing chromosome<br>regions. </strong>Two ancient vertebrate chromosomes bearing one SSTR gene each duplicated in 2R,<br>generating two vertebrate paralogons; one bearing <em>SSTR1, -4</em> and <em>-6</em> genes (purple, pink, blue<br>and turquoise blocks) and one bearing <em>SSTR2, -3</em> and <em>-5</em> genes (red, yellow, orange and green<br>blocks). After the divergence of lobe-finned fishes (including tetrapods) and ray-finned fishes<br>(including teleosts), three of the 2R-generated blocks fused in the ray-finned fish lineage before 3R. Both paralogons duplicated in 3R, followed by rearrangements between<br>paralogous chromosome blocks, obscuring the ancestral conserved synteny. One of the fused,<br>duplicated and rearranged chromosome blocks split through a fission event. The paralogous<br>chromosome regions have been reconstructed for the chicken, human and medaka genomes<br>by mapping the identified paralogous gene families. The upper color blocks represent<br>ancestral chromosome regions in each lineage. Dashed boxes represent losses of chromosome<br>blocks. Chromosome rearrangements involving blocks of genes are represented by arrows,<br>while smaller translocations of genes are represented by dashed arrows. The full datasets are<br>presented in Tables S4 and S5 (see Additional files 3 and 4).
DOI: 10.6084/m9.figshare.104675
title: Gaussian Job Archive for C29H52O17Ti2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104677.v1
title: Gaussian Job Archive for C6H9BrO2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104675.v1
title: Gaussian Job Archive for C29H52O17Ti2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104684.v1
title: Paralogous SSTR-gene bearing chromosome regions in the stickleback and zebrafish genomes

description: Published in: Ocampo Daza D, Sundström G, Bergqvist CA, Larhammar D. The evolution of vertebrate somatostatin receptors and their gene regions involves extensive chromosomal rearrangements. BMC Evolutionary Biology 2012, 12:231 doi:10.1186/1471-2148-12-231. Please refer to this article if using this figure. <strong>Figure 7 Continued from Figure 6.</strong> Paralogous chromosome regions in the stickleback and<br>zebrafish genomes. More rearrangements could be identified in the zebrafish genome than in<br>the stickleback or medaka genomes.
DOI: 10.6084/m9.figshare.104634
title: Gaussian Job Archive for C6H12Cr2O7

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104650
title: Gaussian Job Archive for C12H11NO2S2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104633
title: Gaussian Job Archive for C6H12Cr2O7

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104650.v1
title: Gaussian Job Archive for C12H11NO2S2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104631
title: Gaussian Job Archive for C6H12Cr2O7

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104632
title: Gaussian Job Archive for C6H12Cr2O7

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104633.v1
title: Gaussian Job Archive for C6H12Cr2O7

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104634.v1
title: Gaussian Job Archive for C6H12Cr2O7

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104631.v1
title: Gaussian Job Archive for C6H12Cr2O7

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104632.v1
title: Gaussian Job Archive for C6H12Cr2O7

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104627
title: Gaussian Job Archive for C5H7BrO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104628
title: Gaussian Job Archive for C5H7BrO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104625
title: Gaussian Job Archive for C29H52O17Ti2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104626
title: Gaussian Job Archive for C12H11NO2S2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104628.v1
title: Gaussian Job Archive for C5H7BrO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104626.v1
title: Gaussian Job Archive for C12H11NO2S2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104627.v1
title: Gaussian Job Archive for C5H7BrO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104620
title: #SciFund Round 3 success and social media

description: The #SciFund Challenge is a crowdfunding effort for science. The second round ran during the months of November and December, 2012, and raised $75,978 for 33 scientific research projects, primarily in biology. Some basic information about this round of the challenge can be found at these posts on the #SciFund blog: The social media data here were compiled from public sources (e.g., the RocketHub website, video hosting counts) as soon as possible after the completion of #SciFund (i.e., within the hour after the projects closed).
DOI: 10.6084/m9.figshare.104625.v1
title: Gaussian Job Archive for C29H52O17Ti2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104620.v2
title: #SciFund Round 3 success and social media

description: The #SciFund Challenge is a crowdfunding effort for science. The second round ran during the months of November and December, 2012, and raised $75,978 for 33 scientific research projects, primarily in biology. Some basic information about this round of the challenge can be found at these posts on the #SciFund blog: The social media data here were compiled from public sources (e.g., the RocketHub website, video hosting counts) as soon as possible after the completion of #SciFund (i.e., within the hour after the projects closed).