cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/hz8k62jkyh
title: G-quadruplex folding in Xist RNA antagonizes PRC2 activity for step-wise regulation of X-chromosome inactivation

description: How Polycomb repressive complex 2 (PRC2) is regulated by RNA remains an unsolved problem. While PRC2 binds G-tracts with potential to form RNA G-quadruplexes (rG4), whether rG4’s fold extensively in vivo and whether PRC2 binds folded or unfolded rG4 are unknown. Using the X-inactivation model, here we identify multiple folded rG4’s in Xist RNA and demonstrate that PRC2 preferentially binds folded rG4’s. High-affinity rG4 binding inhibits PRC2’s histone methyltransferase activity and stabilizing rG4 in vivo antagonizes H3K27me3 enrichment on the inactive X-chromosome. Surprisingly, mutagenizing the rG4 does not affect PRC2 recruitment but promotes its release and catalytic activation on chromatin. H3K27me3 marks are misplaced, however, and gene silencing is compromised. Xist-PRC2 complexes become entrapped in the S1 chromosome compartment, precluding the required translocation into the S2 compartment. Thus, Xist rG4 folding dynamics control PRC2 activity, H3K27me3 enrichment, and the step-wise regulation of chromosome-wide gene silencing.
DOI: 10.17632/k7r9d8t8p3
title: Eu2Bi2Fe4O12 Berry phase

description: Berry phase in Eu2Bi2Fe4O12.
See published: DOI 10.1016/j.jallcom.2021.161114
The possible low temperature biferroic feature of Eu2Bi2Fe4O12 complex perovskites was first reported by J.A. Cuervo Farfán et al. The aim of this work is to present a theoretical study of the structural, magnetic, electronic and ferroelectric properties of this material. Several energy minimization processes were performed for three types of cationic distributions, different angles of rotation, octahedral inclination, and some kinds of magnetic ordering. The results reveal that the most stable crystallographic arrangement corresponds to an intercalated distribution of the Eu3+ and Bi3+ cations between the FeO6 octahedra. Similarly, energy is minimized for rotations and octahedral inclinations corresponding to angles e=12.86° and e=13.32°, respectively. With respect to the distribution of magnetic moments, the results reveal that a G-type antiferromagnetic configuration is the most energetically favourable. The electronic structure is studied from ab initio calculations following the formalism of density functional theory and the pseudopotential plane wave method. In this formalism, the exchange and correlation mechanisms are described by means of the generalized gradient approach (GGA + U), considering spin polarization. The ferroelectric characteristic is analysed by determining ferroelectric polarization based on the calculation of the Berry phase. The theoretical results obtained are consistent with the experimental reports, which is why the Eu2Bi2Fe4O12 material is expected to exhibit biferroic behaviour at low temperatures, because the Berry phase introduces hybridisations between the 3d-Fe and 2p-O states that favour the occurrence of Dzyaloshinskii-Moriya interactions, which facilitate the occurrence of ferroelectricity coexisting with weak ferromagnetism. An extensive study of the thermodynamic properties in the presence and absence of the Berry phase is undertaken by means of the Debye quasi harmonic model. The specific heat difference with and without the Berry phase reveals the occurrence of a ferroelectric transition at T=113 K without the application of external pressure. When the applied pressure is incremented, a systematic increase in the transition temperature is observed due to the reduction of overlap between the 3d-Fe orbitals and the 2p-O orbitals in the compressed octahedra of perovskite.
DOI: 10.3535/pq4-2kl-15y
title: Cyphaspis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tlp-qrl-h1d
title: †Cardiola Broderip, 1839

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14156483.v3
title: Data (associated by figure) for Investigation of fractal carbon nanotube networks for biophilic neural sensing applications.

description: Raw data for figures in<br>Browning, L.A.; Watterson, W.; Happe, E.; Silva, S.; Abril Valenzuela, R.; Smith, J.; Dierkes, M.P.; Taylor, R.P.; Plank, N.O.V.; Marlow, C.A. Investigation of fractal carbon nanotube networks for biophilic neural sensing applications. <em>Nanomaterials</em> 2021, <em>11</em>(3), 636; https://doi.org/10.3390/nano11030636 (registering DOI) - 04 Mar 2021
DOI: 10.3535/d77-a7z-g9g
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vfd-chn-w62
title: Grossular

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26362342.v2
title: Supplementary Data S1-S6

description: This dataset belongs to the manuscript entitled "Apatite Geo-thermochronology and Geochemistry Constrain Oligocene-Miocene Growth and Geodynamics of the Northeastern Tibetan Plateau".Supplementary Data S1. Apatite U-Pb isotopic results for samples from the Hualong section, Xunhua Basin. Supplementary Data S2. Apatite U-Pb isotopic results for McClure Mountains apatite.Supplementary Data S3. Apatite fission track single grain age data for samples from the Xunhua section, Xunhua Basin.Supplementary Data S4. Apatite trace elements data for samples from the Hualong Section, Xunhua Basin.Supplementary Data S5. The percentage of detrital apatite U-Pb results for samples from the Xunhua Basin and source terranes.Supplementary Data S6. The percentage of detrital apatite trace element results for samples from the Xunhua Basin and source terranes.
DOI: 10.25582/data.2024-03.3077005/2540833
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/wsb-fv6-k55
title: †Orthoceras Bruguière, 1789

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zt4-3my-va4
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/dz9rrnnwsh
title: Weight multiplicity for unitary groups

description: Title of program: DAM AND DEGSUN Catalogue Id: AAAK_v1_0 Nature of problem The importance of unitary symmetries in physics is well known. This program computes the multiplicity of a weight in a given irreducible representation of U(n). Versions of this program held in the CPC repository in Mendeley Data AAAK_v1_0; DAM AND DEGSUN; 10.1016/0010-4655(78)90005-X This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/sbz2nzc9yr
title: Predictive Value of Tidal Volume and Peak Inspiratory Pressure in Normal Frequency Jet Ventilation

description: Experimental design and experimental data
DOI: 10.3535/3bj-y10-4ef
title: Cromus bohemicus Barrande

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yt2-ccn-jkm
title: Hornblende

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/k527rfpyfw
title: A cell-based model for size control in the multiple fission alga Chlamydomonas reinhardtii

description: Original microscopy data and ImageJ plugins in the article "A cell-based model for size control in the multiple fission alga Chlamydomonas reinhardtii"
DOI: 10.17632/yw5ddk4bxr
title: LINF_080009400

description: hypothetical protein - conserved; Leishmania infantum
DOI: 10.3535/qcs-mnm-04f
title: Glyptolepis? sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nxv-4wl-t8r
title: Hornblende

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tw1-h39-5xb
title: †Lophospira Whitfield, 1886

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3077006/2540834
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/00f-xe7-79k
title: rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0ha-xdg-ehy
title: †Platyceras Conrad, 1840

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.107065.v1
title: Eisen 1995 RecA Evolution

description: Sequence alignments used in Eisen 1995. J Mol Evol. 1995 Dec;41(6):1105-23. The RecA protein as a model molecule for molecular systematic studies of bacteria: comparison of trees of RecAs and 16S rRNAs from the same species.
DOI: 10.15468/dl.735bjc
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Pouteria campechiana (Kunth) Baehni"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009464-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/7sw-zk7-y30
title: †Platyceras Conrad, 1840

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vk0-wn5-fyh
title: †Platyceras Conrad, 1840

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0j3-7ht-j1z
title: †Platyceras Conrad, 1840

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3hn-dd3-zbr
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/pkzfjjmdfz
title: Parallel programming interface for distributed data

description: Abstract The Parallel Programming Interface for Distributed Data (PPIDD) library provides an interface, suitable for use in parallel scientific applications, that delivers communications and global data management. The library can be built either using the Global Arrays (GA) toolkit, or a standard MPI-2 library. This abstraction allows the programmer to write portable parallel codes that can utilise the best, or only, communications library that is available on a particular computing platform. Title of program: PPIDD Catalogue Id: AEEF_v1_0 Nature of problem Many scientific applications require management and communication of data that is global, and the standard MPI 2 protocol provides only low-level methods for the required one-sided remote memory access. Versions of this program held in the CPC repository in Mendeley Data AEEF_v1_0; PPIDD; 10.1016/j.cpc.2009.05.002 AEEF_v2_0; PPIDDv2; 10.1016/j.cpc.2011.03.020 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.25582/data.2024-03.3077007/2540835
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/0rw-plv-14f
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vw5-9mh-j37
title: Topaz

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5xd-6bj-vqp
title: Quartzite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/df2-j0e-rdd
title: Pyrophyllite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12472646.v6
title: Dust, SST, and Productivity Data for ODP 1208A and ODP 885/886 (Abell et al., 2020 - Nature)

description: These Excel files contain all of the elemental, isotopic, export productivity, and SST data for ODP sites 1208 and 885/886 associated with Abell et al., "Poleward and weakened westerlies during Pliocene warmth".<br>Please cite: Abell et al., 2020. Poleward and weakened westerlies during Pliocene warmth. <i>Nature.</i>
DOI: 10.6084/m9.figshare.19111447.v2
title: Visualizing Class Specific Heterogeneous Tendencies in Categorical Data

description: In multiple correspondence analysis, both individuals (observations) and categories can be represented in a biplot that jointly depicts the relationships across categories and individuals, as well as the associations between them. Additional information about the individuals can enhance interpretation capacities, such as by including class information for which the interdependencies are not of immediate concern, but that facilitate the interpretation of the plot with respect to relationships between individuals and categories. This article proposes a new method which we call multiple-class cluster correspondence analysis that identifies clusters specific to classes. The proposed method can construct a biplot that depicts heterogeneous tendencies of individual members, as well as their relationships with the original categorical variables. A simulation study to investigate the performance of the proposed method and an application to data regarding road accidents in the United Kingdom confirms the viability of this approach. Supplementary materials for this article are available online.
DOI: 10.3535/3lp-mxh-adh
title: Andradite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/e45-3vk-mha
title: †Pterinea Goldfuss, 1832

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3077008/2540836
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/abj-zcm-v00
title: Copper

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25523059.v1
title: SUERC Raw data, for JAS publication.Copyright Schjerven et al.,

description: Raw data for Master thesis research (Beyond the Harbour) UiO 2021.
DOI: 10.3535/1bd-f8a-d35
title: Arethusina konincki Barrande, 1846

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dwl-7fc-q10
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.17194823.v3
title: Role of English in Agricultural Organisations

description: Raw data of the surveyMeans and PercentagesInterview ProtocolQuestionnaire
DOI: 10.3535/gs4-7e0-c72
title: †Omphalocirrus goldfussii (d'Archiac & de Verneuil, 1842)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xg2-ngv-hv3
title: Almandine

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3077009/2540837
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/133-mfp-qna
title: Talc

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xxg-rwt-sxa
title: Quartz

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5x6-bmt-p17
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6k8-d5h-gqd
title: Lucina Bruguière, 1797

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/ttjw7w2xfn
title: Simultaneous Gait Data from Marker-based Stereophotogrammetry and 3D Temporal Scanner

description: This repository contains the data used for the analysis reported in "Accuracy of a 3D Temporal Scanning System for Gait Analysis: Comparative With a Marker-based Photogrammetry System" (Gait & Posture 97, https://doi.org/10.1016/j.gaitpost.2022.07.001).

The `trc` folder contains one subfolder for each subject (12 in total), with the following files:
  * TRC files with marker positions recorded with both systems (Kinemov for MBSP, Move4D for 3DTS) in the calibration posture, and in the two gait trials. The particular measurment of each file is described in the file name: `[subject_code]_[calibration/measurement_1/measurement_2/]_[kinemov/move4d].trc`.
  * TXT file with the characteristics of the subject: sex, height, knee and ankle widths, and start/end frames for the gait cycles in the time series recorded in the TRC files.

The `jointangles` folder contains 24 CSV files with the joint angles (hip, knee, and pelvis) of the two gait cycles measured for each subject (one file per subject and trial). Each file has 18 columns (3 joints x 3 angles x 2 systems [kin for MBSP, mov for 3DTS]).

The `stats` foder contains three CSV files:
 * `rangesofmotion.csv`, with the ranges (max - min) of the joint angles time series (one row for each file in the `jointangles` folder).
 * `jointangle_errors.csv`, with the RMS of the "errors" resulting from the comparison of MBSP and 3DTS joint angles (one row for each file in the `jointangles` folder).
 * `markererror_stats.csv` with pooled means and standard deviations of the position "errors" of the anatomical landmarks, resulting from the comparison of MBSP and 3DTS measurements.

The `scripts` folder contains the code in Julia (https://julialang.org/) used to calculate the marker position errors reported in `markererror_stats.csv`, and to perform the statistical analysis of those errors that is reported in the paper. (See "Steps to reproduce" below.)
The joint angles time series contained in the `jointangles` folder and the resultings summaries contained in the other files of `stats`, can be calculated from the data contained in the `trc` folder, following the instructions given in the paper. (The code for that analysis is not included.)
DOI: 10.3535/4dn-zkk-fvs
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dy6-967-3h6
title: Calymene

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3077011/2540838
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/b0m-j18-6nj
title: †Dalmanitina socialis (Barrande, 1846)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nbb-83s-l8b
title: Topaz

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.9862184.v1
title: HetSRWGAN-dataset

description: The training dataset is CVC-09-1K.
DOI: 10.3535/2am-x1m-1a9
title: Garnet

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/80b-kwf-f66
title: Serpentine subgroup

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jvr-lgg-fx5
title: Phlogopite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n6y-q99-16n
title: Serpentine

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/7tc5wkkk4s
title: Convective Dust Flux, Water Flux, and Water Content Estimates For The Martian Atmosphere Based On Observations by The Mars Reconnaissance Orbiter

description: I. Top Level Description This dataset archives estimates of orbitally-averaged convective (sub-diurnal timescale) dust flux, water flux, and water content from available observations by instruments aboard Mars Reconnaissance Orbiter during Mars Years 28-34. The underlying methodology of this analysis is described in detail in Heavens et al. (2018). The methodology was slightly modified for use in Heavens et al. (2019a,b) to prevent an unrealistic echo effect in the convective dust flux analysis. Examples of Matlab code used to plot this dataset are included. The README.TXT explains the contents of each file in detail. References: Heavens, N.G., A. Kleinböhl, M.S. Chaffin, J.S. Halekas, D.M. Kass, P.O. Hayne, D.J. McCleese, S. Piqueux, J.H. Shirley, and J.T. Schofield, 2018, Hydrogen escape from Mars enhanced by deep convection in dust storms, Nature Astron, 2, 126–132, doi: 10.1038/s41550-017-0353-4. Heavens, N.G., D.M. Kass, J.H. Shirley, S. Piqueux, and B.A. Cantor, 2019a, An Observational Overview of Dusty Deep Convection in Martian Dust Storms, J. Atmos. Sci., in press, doi: 10.1175/JAS-D-19-0042.1. Heavens, N.G., D.M. Kass, and J.H. Shirley, 2019b, Dusty Deep Convection in the Mars Year 34 Planet-Encircling Dust Event, submitted to J. Geophys. Res. Planets. Acknowledgments: The archiving of this dataset was supported by the NASA Mars Data Analysis, Solar System Workings, and Nexus for Exoplanet System Science programs (NNX14AM32G, NNX15AI33G, and NNX15AE05G).
DOI: 10.25582/data.2024-03.3077012/2540839
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/ph0-w3a-ja7
title: Phlogopite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/s7x-j7s-9n5
title: Phosphorite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7dw-pkx-swz
title: Andradite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/szl-zma-7yf
title: Topaz

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/smt57bdtzk
title: Maturity of Data Interoperability Cross-Organizations in Supporting the Concept of One Employment Data

description: Data used in the article Maturity of Data Interoperability Cross-Organizations in Supporting the Concept of One Employment Data
DOI: 10.3535/jmb-b6r-2f5
title: Terebratula Müller, 1776

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/jwwyy4xryx
title: Mexican public librarians: three interviews and a survey results about its role within the library [Bibliotecarios públicos mexicanos: tres entrevistas y los resultados de una encuesta sobre su papel dentro de la biblioteca]

description: A questionnaire was conducted to 15 public librarians on the perception of their role in the library where they work. The results of this survey are added to this data set. Transcripts of three interviews of approximately 1:50 minutes on the perception of their role in the library are added too. In order to analyze their perceptions to determine their level of empowerment.


Se realizó un cuestionario a 15 bibliotecarios públicos sobre la percepción de su papel en la biblioteca donde trabajan. Los resultados de esta encuesta se añaden a este conjunto de datos. También se añaden las transcripciones de tres entrevistas de aproximadamente 1:50 minutos sobre la percepción de su papel en la biblioteca. Con el fin de analizar sus percepciones para determinar su nivel de empoderamiento.
DOI: 10.3535/500-zhe-x2y
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/9cb-6m1-77k
title: Almandine

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3077013/2540840
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/04t-m58-r1r
title: Hemimorphite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/881-m9f-w13
title: Phlogopite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/lwp-n55-f7h
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/f6xnzg9jvs
title: ChannelTrack1.0

description: A tool for detection of channels from LiDAR derived DTMs.