cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3665758_d5.v1
title: Additional file 1: of RNA sequencing for global gene expression associated with muscle growth in a single male modern broiler line compared to a foundational Barred Plymouth Rock chicken line

description: Primers used for qRT-PCR. The first column indicates primer names and the second column shows sequences for the forward and reverse primers. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3665767_d3.v1
title: Additional file 2: Table S1. of Delta-like 4/Notch signaling promotes Apc
                     
                        Min/+ tumor initiation through angiogenic and non-angiogenic related mechanisms

description: Primer pair sequences list used in RT-PCR reactions. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.c.3665758_d5
title: Additional file 1: of RNA sequencing for global gene expression associated with muscle growth in a single male modern broiler line compared to a foundational Barred Plymouth Rock chicken line

description: Primers used for qRT-PCR. The first column indicates primer names and the second column shows sequences for the forward and reverse primers. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3665767_d3
title: Additional file 2: Table S1. of Delta-like 4/Notch signaling promotes Apc
                     
                        Min/+ tumor initiation through angiogenic and non-angiogenic related mechanisms

description: Primer pair sequences list used in RT-PCR reactions. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.c.3665737_d10.v1
title: Additional file 3: of Genomic pathways modulated by Twist in breast cancer

description: Ranked list of probe sets expressed multi-directionally in all three groups. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3665923_d1.v1
title: Additional file 2 of Single genome retrieval of context-dependent variability in mutation rates for human germline

description: Supplementary numerical data. The raw data on the substitution rate constants in the reference L1 sequence (data 1), the resulting Trek database processed with (data 2) and without (data 3) the strand-symmetry considerations, the k-mer content for the masked and unmasked human genomes (data 4), the full set of 7-mer sequences with the respective cancer enrichment scores and basal substitution propensity values (data 5), and the GBM parameters that were minimising the error of the tree-based test models (data 6). The file is in the plain TXT format. (TXT 3266 kb)
DOI: 10.6084/m9.figshare.c.3665923_d1
title: Additional file 2 of Single genome retrieval of context-dependent variability in mutation rates for human germline

description: Supplementary numerical data. The raw data on the substitution rate constants in the reference L1 sequence (data 1), the resulting Trek database processed with (data 2) and without (data 3) the strand-symmetry considerations, the k-mer content for the masked and unmasked human genomes (data 4), the full set of 7-mer sequences with the respective cancer enrichment scores and basal substitution propensity values (data 5), and the GBM parameters that were minimising the error of the tree-based test models (data 6). The file is in the plain TXT format. (TXT 3266 kb)
DOI: 10.6084/m9.figshare.c.3665911_d5.v1
title: Additional file 8: Table S4. of Evolution of the angiopoietin-like gene family in teleosts and their role in skin regeneration

description: List of the teleost angptl ESTs and their origin. Data was retrieved from the NCBI database using sea bass angptl members as the query. ESTs retrieved were those present in skin or from teleost fins and bony structures covered with skin. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3665911_d4.v1
title: Additional file 1: Table S1. of Evolution of the angiopoietin-like gene family in teleosts and their role in skin regeneration

description: Accession numbers of the fish, tetrapod and cephalochordate Angptl genes and sea bream transcripts. * very incomplete sequence and not included in the phylogenetic tree; ni-not identified. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3665911_d5
title: Additional file 8: Table S4. of Evolution of the angiopoietin-like gene family in teleosts and their role in skin regeneration

description: List of the teleost angptl ESTs and their origin. Data was retrieved from the NCBI database using sea bass angptl members as the query. ESTs retrieved were those present in skin or from teleost fins and bony structures covered with skin. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3665911_d4
title: Additional file 1: Table S1. of Evolution of the angiopoietin-like gene family in teleosts and their role in skin regeneration

description: Accession numbers of the fish, tetrapod and cephalochordate Angptl genes and sea bream transcripts. * very incomplete sequence and not included in the phylogenetic tree; ni-not identified. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3666388_d3.v1
title: Additional file 1: of iGCâ  an integrated analysis package of gene expression and copy number alteration

description: The source codes and example data of the package iGC in R. (GZ 2818 kb)
DOI: 10.6084/m9.figshare.c.3666388_d3
title: Additional file 1: of iGCâ  an integrated analysis package of gene expression and copy number alteration

description: The source codes and example data of the package iGC in R. (GZ 2818 kb)
DOI: 10.6084/m9.figshare.c.3667381_d10
title: Additional file 14: Table S9. of The unique genomic landscape surrounding the EPSPS gene in glyphosate resistant Amaranthus palmeri: a repetitive path to resistance

description: Structural comparison between the EPSPS cassette and A. tuberculatus, and B. vulgaris. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3667435_d3
title: Additional file 2: of Are interventions to increase the uptake of screening for cardiovascular disease risk factors effective? A systematic review and meta-analysis

description: Judgement of risk of bias and risk of bias summary of individual studies. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.c.3667435_d3.v1
title: Additional file 2: of Are interventions to increase the uptake of screening for cardiovascular disease risk factors effective? A systematic review and meta-analysis

description: Judgement of risk of bias and risk of bias summary of individual studies. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.c.3667426_d4.v1
title: Additional file 3: of Diet, gonadal sex, and sex chromosome complement influence white adipose tissue miRNA expression

description: 7 cases of miRNAs that were of unequal length, and thus read counts had to be adjusted for non-unique mapping. (TXT 364)
DOI: 10.6084/m9.figshare.c.3667426_d4
title: Additional file 3: of Diet, gonadal sex, and sex chromosome complement influence white adipose tissue miRNA expression

description: 7 cases of miRNAs that were of unequal length, and thus read counts had to be adjusted for non-unique mapping. (TXT 364)
DOI: 10.6084/m9.figshare.c.3667438_d6.v1
title: Additional file 12 of Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models

description: The data and code for running the analysis for lactamase. This is a 7-Zip file containing an iPython notebook and the relevant data files. (7z 2692 kb)
DOI: 10.15468/dl.3cyx8p
title: Occurrence Download

description: A dataset containing 263 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "TaxonKey is Acacia dealbata Link"
 ]
}

 The dataset includes 263 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038630-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3667537_d2.v1
title: Additional file 5: of Deciphering composition and function of the root microbiome of a legume plant

description: Unique ID, taxonomy, isolation source, and FASTA sequence of the isolates in the bacteria reference stock. (XLSX 88 kb)
DOI: 10.6084/m9.figshare.c.3667537_d2
title: Additional file 5: of Deciphering composition and function of the root microbiome of a legume plant

description: Unique ID, taxonomy, isolation source, and FASTA sequence of the isolates in the bacteria reference stock. (XLSX 88 kb)
DOI: 10.6084/m9.figshare.c.3667537_d4.v1
title: Additional file 4: of Deciphering composition and function of the root microbiome of a legume plant

description: R code and necessary input files needed to replicate all statistical analyses and reproduce R-generated figures. (RAR 2550 kb)
DOI: 10.6084/m9.figshare.c.3668728_d1
title: MOESM6 of The antineoplastic drug, trastuzumab, dysregulates metabolism in iPSC-derived cardiomyocytes

description: Additional file 6: Table S4. Gene ontology enrichment analysis of lapatinib induced differentially expressed genes in iPSC dervied cardiomyocytes.
DOI: 10.6084/m9.figshare.c.3668728_d2.v1
title: MOESM8 of The antineoplastic drug, trastuzumab, dysregulates metabolism in iPSC-derived cardiomyocytes

description: Additional file 8: Table S6. Differentially expressed genes in Gene ontology categories of cholesterol and sterol metabolism and biosynthesis.
DOI: 10.6084/m9.figshare.c.3668737_d3.v1
title: Additional file 3: of iRegNet3D: three-dimensional integrated regulatory network for the genomic analysis of coding and non-coding disease mutations

description: Supplementary tables: summary statistics of iRegNet3D. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.c.3668728_d2
title: MOESM8 of The antineoplastic drug, trastuzumab, dysregulates metabolism in iPSC-derived cardiomyocytes

description: Additional file 8: Table S6. Differentially expressed genes in Gene ontology categories of cholesterol and sterol metabolism and biosynthesis.
DOI: 10.6084/m9.figshare.c.3668737_d3
title: Additional file 3: of iRegNet3D: three-dimensional integrated regulatory network for the genomic analysis of coding and non-coding disease mutations

description: Supplementary tables: summary statistics of iRegNet3D. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.c.3668797_d9
title: Additional file 6: Table S6. of Conserved gene expression in sperm reservoirs between birds and mammals in response to mating

description: Differentially expressed genes (multiple condition comparisons) with permutation test in chicken. (XLSX 20Â kb)
DOI: 10.4121/8c1810b9-c29e-4f8b-8c11-025bd559e5c6
title: Data underlying the PhD dissertation: "Acoustical preferences and needs of students: Methods and indicators to assess the acoustical quality of study places", Chapters 3, 4, and 6

description: The files contains the data underlying the studies presented in Chapters 3,4, and 6 of the PhD dissertation titled "Acoustical preferences and needs of students: Methods and indicators to assess the acoustical quality of study places".Chapter 3 presents the profiles of university students based on their indoor environmental quality and psychosocial preferences of their study places based on the MyStudyPlace questionnaire. This chapter has been published: https://doi.org/10.3390/buildings13010231.Chapter 4 presents the profiles of university students based on their acoustical and psychosocial preferences of their study places based on the MyStudyPlace questionnaire and the field study. This chapter has been published: https://doi.org/10.1016/j.buildenv.2024.111324.Chapter 6 presents the interview with the students that investigates the indoor soundscape of students at their home study places. This chapter has been published:https://doi.org/10.3397/IN_2024_2276
DOI: 10.4121/8c1810b9-c29e-4f8b-8c11-025bd559e5c6.v1
title: Data underlying the PhD dissertation: "Acoustical preferences and needs of students: Methods and indicators to assess the acoustical quality of study places", Chapters 3, 4, and 6

description: The files contains the data underlying the studies presented in Chapters 3,4, and 6 of the PhD dissertation titled "Acoustical preferences and needs of students: Methods and indicators to assess the acoustical quality of study places".Chapter 3 presents the profiles of university students based on their indoor environmental quality and psychosocial preferences of their study places based on the MyStudyPlace questionnaire. This chapter has been published: https://doi.org/10.3390/buildings13010231.Chapter 4 presents the profiles of university students based on their acoustical and psychosocial preferences of their study places based on the MyStudyPlace questionnaire and the field study. This chapter has been published: https://doi.org/10.1016/j.buildenv.2024.111324.Chapter 6 presents the interview with the students that investigates the indoor soundscape of students at their home study places. This chapter has been published:https://doi.org/10.3397/IN_2024_2276
DOI: 10.6084/m9.figshare.c.3668797_d10.v1
title: Additional file 8: Table S8. of Conserved gene expression in sperm reservoirs between birds and mammals in response to mating

description: Differentially expressed genes (SF vs control) with permutation test in chicken. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.c.3668797_d10
title: Additional file 8: Table S8. of Conserved gene expression in sperm reservoirs between birds and mammals in response to mating

description: Differentially expressed genes (SF vs control) with permutation test in chicken. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.c.3668797_d11.v1
title: Additional file 11: Table S11. of Conserved gene expression in sperm reservoirs between birds and mammals in response to mating

description: Differentially expressed genes (SP vs control) with permutation test in pig. (XLSX 40Â kb)
DOI: 10.6084/m9.figshare.c.3668797_d11
title: Additional file 11: Table S11. of Conserved gene expression in sperm reservoirs between birds and mammals in response to mating

description: Differentially expressed genes (SP vs control) with permutation test in pig. (XLSX 40Â kb)
DOI: 10.6084/m9.figshare.c.3668827_d6.v1
title: Additional file 6: of Effects of Pleistocene sea-level fluctuations on mangrove population dynamics: a lesson from Sonneratia alba

description: Gene IDs, gene descriptions, primer sequences and GenBank accession numbers of haplotypes for the chloroplast DNA (cpDNA) fragments and nuclear loci used in this study. (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.c.3668827_d6
title: Additional file 6: of Effects of Pleistocene sea-level fluctuations on mangrove population dynamics: a lesson from Sonneratia alba

description: Gene IDs, gene descriptions, primer sequences and GenBank accession numbers of haplotypes for the chloroplast DNA (cpDNA) fragments and nuclear loci used in this study. (XLSX 35Â kb)
DOI: 10.15468/dl.dpcmqm
title: Occurrence Download

description: A dataset containing 42754 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lynx rufus (Schreber, 1777)"
 ]
}

 The dataset includes 42754 records from 187 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038629-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3669949_d1
title: Additional file 1: of Ecotone response to climatic variability depends on stress gradient interactions

description: The Netlogo code for the size gradient model. The Netlogo system can be downloaded at https://ccl.northwestern.edu/netlogo/ . (NLOGO 22 kb)
DOI: 10.6084/m9.figshare.c.3669952_d1.v1
title: Additional file 2: Table S1. of High virulence does not necessarily impede viral adaptation to a new host: a case study using a plant RNA virus

description: Mutations detected in the N. bentiamiana lineages as compared to the ancestral lineage. Table S2. Mutations detected in the D. stramonium lineages as compared to the ancestral lineage. Table S3. Mutations detected in the N. tabacum lineages as compared to the ancestral lineage. (XLS 149Â kb)
DOI: 10.6084/m9.figshare.c.3669952_d1
title: Additional file 2: Table S1. of High virulence does not necessarily impede viral adaptation to a new host: a case study using a plant RNA virus

description: Mutations detected in the N. bentiamiana lineages as compared to the ancestral lineage. Table S2. Mutations detected in the D. stramonium lineages as compared to the ancestral lineage. Table S3. Mutations detected in the N. tabacum lineages as compared to the ancestral lineage. (XLS 149Â kb)
DOI: 10.15468/dl.86pxp7
title: Occurrence Download

description: A dataset containing 7705252 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7705252 records from 1879 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038612-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nys92a
title: Occurrence Download

description: A dataset containing 269 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ericaceae",
 "Geometry POLYGON ((-3.547607 36.94062, -2.663865 36.94062, -2.663865 37.21119, -3.547607 37.21119, -3.547607 36.94062))"
 ]
}

 The dataset includes 269 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023287-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x4fy4x
title: Occurrence Download

description: A dataset containing 274 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-32.32183 36.13606,-24.42189 36.13606,-24.42189 40.66823,-32.32183 40.66823,-32.32183 36.13606))",
 "TaxonKey is Veronica anagallis-aquatica L.",
 "Year 1975-2025"
 ]
}

 The dataset includes 274 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023290-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wafj2q
title: Occurrence Download

description: A dataset containing 8773 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Specimen)",
 "TaxonKey is Molossus molossus (Pallas, 1766)",
 "Year 1970-2025"
 ]
}

 The dataset includes 8773 records from 203 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023288-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.48n47v
title: Occurrence Download

description: A dataset containing 662 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-31.99629 36.28994,-24.49172 36.28994,-24.49172 40.54149,-31.99629 40.54149,-31.99629 36.28994))",
 "TaxonKey is Viola palustris subsp. juressii (Link ex Wein) Cout.",
 "Year 1975-2025"
 ]
}

 The dataset includes 662 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023291-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qkgv9b
title: Occurrence Download

description: A dataset containing 364244 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trifolium dubium Sibth.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 364244 records from 2328 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023284-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15147539
title: Histórico de Inmuebles más Caros de Fotocasa

description: El archivo fotocasa_historico.csv, es un dataset que ha sido creado para la realización de la PRACT1 de la asignatura Tipología y Ciclo de Vida de los Datos del Máster Universitario en Ciencia de Datos de la UOC. Este conjunto de datos contiene los datos de los inmuebles más caros a la venta de varias ciudades de la página fotocasa.es, concretamente de Tarragona (capital), Reus, Mataró, Vilanova i la Geltrú, Sitges y Amposta. Para cada vivienda, se recogen las variables ID del inmueble (referencia que fotocasa emplea para identificar la propiedad), ciudad (ciudad donde se encuentra la vivienda), inmobiliaria (empresa que vende el inmueble), precio (cuánto cuesta la vivienda en euros), tipo de inmueble (si se trata de una casa, piso o bajos, por ejemplo), dirección (localización de la propiedad), habitaciones (número de cuartos del inmueble), baños (número de lavabos del habitáculo), superficie (área de la vivienda en metros cuadrados), parking (si la propiedad dispone de aparcamiento personal), terraza (si el inmueble cuenta con un balcón), piscina (si la propiedad presenta una piscina), y fecha (fecha en la que se recogieron todos estos datos). Este último, se emplea para crear un registro histórico de estos datos, de manera que puede compararse la evolución en el tiempo de los valores de las diferentes variables, lo cual puede resultar útil para un consultor inmobiliario cuyos clientes tengan un alto poder adquisitivo. De todas formas, en este dataset se incluyen los datos de estas viviendas únicamente para dos fechas a modo de ejemplo, pero este registro histórico puede ampliarse ejecutando el programa del paquete de python fotocasa.
DOI: 10.5281/zenodo.15147540
title: Histórico de Inmuebles más Caros de Fotocasa

description: El archivo fotocasa_historico.csv, es un dataset que ha sido creado para la realización de la PRACT1 de la asignatura Tipología y Ciclo de Vida de los Datos del Máster Universitario en Ciencia de Datos de la UOC. Este conjunto de datos contiene los datos de los inmuebles más caros a la venta de varias ciudades de la página fotocasa.es, concretamente de Tarragona (capital), Reus, Mataró, Vilanova i la Geltrú, Sitges y Amposta. Para cada vivienda, se recogen las variables ID del inmueble (referencia que fotocasa emplea para identificar la propiedad), ciudad (ciudad donde se encuentra la vivienda), inmobiliaria (empresa que vende el inmueble), precio (cuánto cuesta la vivienda en euros), tipo de inmueble (si se trata de una casa, piso o bajos, por ejemplo), dirección (localización de la propiedad), habitaciones (número de cuartos del inmueble), baños (número de lavabos del habitáculo), superficie (área de la vivienda en metros cuadrados), parking (si la propiedad dispone de aparcamiento personal), terraza (si el inmueble cuenta con un balcón), piscina (si la propiedad presenta una piscina), y fecha (fecha en la que se recogieron todos estos datos). Este último, se emplea para crear un registro histórico de estos datos, de manera que puede compararse la evolución en el tiempo de los valores de las diferentes variables, lo cual puede resultar útil para un consultor inmobiliario cuyos clientes tengan un alto poder adquisitivo. De todas formas, en este dataset se incluyen los datos de estas viviendas únicamente para dos fechas a modo de ejemplo, pero este registro histórico puede ampliarse ejecutando el programa del paquete de python fotocasa.
DOI: 10.5281/zenodo.15147799
title: Dataset: Post-treatment of high-rate activated sludge effluent via zeolite adsorption and recovery of ammonium-nitrogen

description: Dataset used to write journal article (doi:10.1016/j.biortech.2024.130837) covering the post-treatment of high-rate activated sludge effluent via zeolite adsorption and recovery of ammonium-nitrogen to produce potential alternative fertilising products. The data included is data gathered from column experiments (for breakthrough modelling and to compare different N recovery methods). Metal and cation content results for the treated wastewater and adsorption outputs is also included. Is supplement to:

Journal article: 10.1016/j.biortech.2024.130837 (DOI)

Journal article: https://biblio.ugent.be/publication/01HZ1VH3ZNG1EGZ3XNNMD8PWQ2