cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12877984.v1
title: Additional file 5 of Computational study of associations between histone modification and protein-DNA binding in yeast genome by integrating diverse information

description: Additional file 5:AddFile5_18clusters_orf_nonfunctional.zip ZIP files. Protein clustering for non-functional binding target. Here contains results (8clusters_orf_unfunction.html) of 18 clusters for non-functional binding sites. (ZIP 1 MB)
DOI: 10.6084/m9.figshare.7959380.v1
title: A Metaheuristic Adaptive Cubature Based Algorithm to Find Bayesian Optimal Designs for Nonlinear Models

description: Finding Bayesian optimal designs for nonlinear models is a difficult task because the optimality criterion typically requires us to evaluate complex integrals before we perform a constrained optimization. We propose a hybridized method where we combine an adaptive multidimensional integration algorithm and a metaheuristic algorithm called imperialist competitive algorithm (ICA) to find Bayesian optimal designs. We apply our numerical method to a few challenging design problems to demonstrate its efficiency. They include finding <i>D</i>-optimal designs for an item response model commonly used in education, Bayesian optimal designs for survival models and Bayesian optimal designs for a four-parameter sigmoid Emax dose response model. Supplementary materials for this article are available online and they contain an R package for implementing the proposed algorithm and codes for reproducing all the results in this paper.
DOI: 10.6084/m9.figshare.12877975.v1
title: Additional file 2 of Computational study of associations between histone modification and protein-DNA binding in yeast genome by integrating diverse information

description: Additional file 2:AddFile2_results_of_T-test_vs_RanksSum_test.xls Excel files. Results of t-test and rank-sum test. Here contains heat-maps of log10 transformed P-values computed by both student T-test and Rank-sum test based on the same datasets (e.g. 11 histone acetylation levels from Kurdistani SK et al. for probes binding and coupling verse probes binding but not coupling). (XLSX 66 KB)
DOI: 10.6084/m9.figshare.12877987.v1
title: Additional file 6 of Computational study of associations between histone modification and protein-DNA binding in yeast genome by integrating diverse information

description: Additional file 6:AddFile6_Clusters_of_functionalBindingTF_BioGRid_protein_protein_interactions.xls Excel files. Results from BioGrid database. Here contains protein-protein interactions that extracted from BioGrid database for clusters of functional binding target. (XLS 38 KB)
DOI: 10.6084/m9.figshare.12877981
title: Additional file 4 of Computational study of associations between histone modification and protein-DNA binding in yeast genome by integrating diverse information

description: Additional file 4:AddFile4_18clusters_orf_functional.zip ZIP files. Protein clustering for functional binding target. Here contains results (18clusters_orf_function.html) of 18 clusters for functional binding sites. (ZIP 1 MB)
DOI: 10.6084/m9.figshare.12877981.v1
title: Additional file 4 of Computational study of associations between histone modification and protein-DNA binding in yeast genome by integrating diverse information

description: Additional file 4:AddFile4_18clusters_orf_functional.zip ZIP files. Protein clustering for functional binding target. Here contains results (18clusters_orf_function.html) of 18 clusters for functional binding sites. (ZIP 1 MB)
DOI: 10.6084/m9.figshare.12877984
title: Additional file 5 of Computational study of associations between histone modification and protein-DNA binding in yeast genome by integrating diverse information

description: Additional file 5:AddFile5_18clusters_orf_nonfunctional.zip ZIP files. Protein clustering for non-functional binding target. Here contains results (8clusters_orf_unfunction.html) of 18 clusters for non-functional binding sites. (ZIP 1 MB)
DOI: 10.6084/m9.figshare.12877987
title: Additional file 6 of Computational study of associations between histone modification and protein-DNA binding in yeast genome by integrating diverse information

description: Additional file 6:AddFile6_Clusters_of_functionalBindingTF_BioGRid_protein_protein_interactions.xls Excel files. Results from BioGrid database. Here contains protein-protein interactions that extracted from BioGrid database for clusters of functional binding target. (XLS 38 KB)
DOI: 10.6084/m9.figshare.12877999.v4
title: Additional file of Computational study of associations between histone modification and protein-DNA binding in yeast genome by integrating diverse information

description: Additional file of Computational study of associations between histone modification and protein-DNA binding in yeast genome by integrating diverse information
DOI: 10.6084/m9.figshare.12877999.v8
title: Additional file of Computational study of associations between histone modification and protein-DNA binding in yeast genome by integrating diverse information

description: Additional file of Computational study of associations between histone modification and protein-DNA binding in yeast genome by integrating diverse information
DOI: 10.6084/m9.figshare.12877999.v7
title: Additional file of Computational study of associations between histone modification and protein-DNA binding in yeast genome by integrating diverse information

description: Additional file of Computational study of associations between histone modification and protein-DNA binding in yeast genome by integrating diverse information
DOI: 10.6084/m9.figshare.12877999.v6
title: Additional file of Computational study of associations between histone modification and protein-DNA binding in yeast genome by integrating diverse information

description: Additional file of Computational study of associations between histone modification and protein-DNA binding in yeast genome by integrating diverse information
DOI: 10.6084/m9.figshare.7959278
title: DongliuWaterway_imput_data

description: The imput data of numerical case studies in Dongliu Waterway, Lower Yangtze River. <br>
DOI: 10.6084/m9.figshare.7959275
title: DongliuWaterway_IT

description: The initial topography of numerical case studies in Dongliu Waterway, Lower Yangtze River。<br>
DOI: 10.6084/m9.figshare.7959278.v1
title: DongliuWaterway_imput_data

description: The imput data of numerical case studies in Dongliu Waterway, Lower Yangtze River. <br>
DOI: 10.6084/m9.figshare.7959275.v1
title: DongliuWaterway_IT

description: The initial topography of numerical case studies in Dongliu Waterway, Lower Yangtze River。<br>
DOI: 10.21227/k8kf-1g72
title: Color fractal images with correlated RGB color components

description: The color fractal images with correlated RGB color components were generated using the midpoint displacement alogrithm, using vectorial increments in the RGB color space, according to a multivariate Gaussian distribution specified by the variance-covariance matrix. This data set contains two sets of 25 color fractal images with two color components, of varying complexity expressed as the color fractal dimension, as a function of (i) the Hurst coefficient that was varied from 0.1 to 0.9 in steps of 0.2 and (ii) the correlation coefficient between the red and green color channels. It also contains a set of 9 color fractal images with three color components, for an arbitrary configuration of the variance-covariance matrix. Each fractal object was either independently rendered as a color image (the not normalized set) or applying a global normalization by considering the extreme values of the most complext color fractal image (the normalized set). The data set is intented to be used as a reference data set for color texture complexity analysis when considering fractal dimension estimation.
DOI: 10.6084/m9.figshare.12878026.v2
title: Additional file of Comparative genomic analyses identify common molecular pathways modulated upon exposure to low doses of arsenic and cadmium

description: Additional file of Comparative genomic analyses identify common molecular pathways modulated upon exposure to low doses of arsenic and cadmium
DOI: 10.6084/m9.figshare.12878026.v5
title: Additional file of Comparative genomic analyses identify common molecular pathways modulated upon exposure to low doses of arsenic and cadmium

description: Additional file of Comparative genomic analyses identify common molecular pathways modulated upon exposure to low doses of arsenic and cadmium
DOI: 10.6084/m9.figshare.12878026.v1
title: Additional file of Comparative genomic analyses identify common molecular pathways modulated upon exposure to low doses of arsenic and cadmium

description: Additional file of Comparative genomic analyses identify common molecular pathways modulated upon exposure to low doses of arsenic and cadmium
DOI: 10.6084/m9.figshare.12878026.v3
title: Additional file of Comparative genomic analyses identify common molecular pathways modulated upon exposure to low doses of arsenic and cadmium

description: Additional file of Comparative genomic analyses identify common molecular pathways modulated upon exposure to low doses of arsenic and cadmium
DOI: 10.6084/m9.figshare.7959170
title: Wright egg discrim data.txt

description: Egg rejection behavior and traits of queens in two species of Polistes paper wasps
DOI: 10.6084/m9.figshare.7959170.v1
title: Wright egg discrim data.txt

description: Egg rejection behavior and traits of queens in two species of Polistes paper wasps
DOI: 10.6084/m9.figshare.7959071
title: 2013-2.mat

description: elephant seals individual N°2 year 2013
DOI: 10.6084/m9.figshare.7959080
title: DongliuWaterway_BCs.xlsx

description: The boundary conditions of numerical case studies in Dongliu Waterway, Lower Yangtze River.<br>
DOI: 10.6084/m9.figshare.7959065
title: 2013-7.mat

description: elephant seal individual N°7 year 2013
DOI: 10.6084/m9.figshare.7959068
title: 2013-1.mat

description: elephant seal individual N°1 year 2013
DOI: 10.6084/m9.figshare.7959071.v1
title: 2013-2.mat

description: elephant seals individual N°2 year 2013
DOI: 10.6084/m9.figshare.7959059
title: 2013-3.mat

description: elephant seal individual N°3 year 2013
DOI: 10.6084/m9.figshare.7959065.v1
title: 2013-7.mat

description: elephant seal individual N°7 year 2013
DOI: 10.6084/m9.figshare.7959068.v1
title: 2013-1.mat

description: elephant seal individual N°1 year 2013
DOI: 10.6084/m9.figshare.7959080.v1
title: DongliuWaterway_BCs.xlsx

description: The boundary conditions of numerical case studies in Dongliu Waterway, Lower Yangtze River.<br>
DOI: 10.6084/m9.figshare.7959053
title: 2013-18.mat

description: elephant seal individual N°18 year 2013
DOI: 10.6084/m9.figshare.7959056
title: 2011-21.mat

description: elephant seal individual N°21 year 2011
DOI: 10.6084/m9.figshare.7959062
title: 2012-2.mat

description: elephant seal individual N°2 year 2012
DOI: 10.6084/m9.figshare.7959059.v1
title: 2013-3.mat

description: elephant seal individual N°3 year 2013
DOI: 10.6084/m9.figshare.7959050
title: 2011-28.mat

description: elephant seal individual N°28 year 2011
DOI: 10.6084/m9.figshare.7959053.v1
title: 2013-18.mat

description: elephant seal individual N°18 year 2013
DOI: 10.6084/m9.figshare.7959062.v1
title: 2012-2.mat

description: elephant seal individual N°2 year 2012
DOI: 10.6084/m9.figshare.7959044
title: 2011-18.mat

description: elephant seal individual N°18 year 2011
DOI: 10.6084/m9.figshare.7959050.v1
title: 2011-28.mat

description: elephant seal individual N°28 year 2011
DOI: 10.6084/m9.figshare.7959056.v1
title: 2011-21.mat

description: elephant seal individual N°21 year 2011
DOI: 10.6084/m9.figshare.7959038
title: 2012-4.mat

description: elephant seal individual N°4 year 2012
DOI: 10.6084/m9.figshare.7959041
title: 2011-26.mat

description: elephant seal individual N°26 year 2011
DOI: 10.6084/m9.figshare.7959047
title: 2012-1.mat

description: elephant seal individual N°1 year 2012
DOI: 10.6084/m9.figshare.7959044.v1
title: 2011-18.mat

description: elephant seal individual N°18 year 2011
DOI: 10.6084/m9.figshare.7959041.v1
title: 2011-26.mat

description: elephant seal individual N°26 year 2011
DOI: 10.6084/m9.figshare.7959047.v1
title: 2012-1.mat

description: elephant seal individual N°1 year 2012
DOI: 10.6084/m9.figshare.7959038.v1
title: 2012-4.mat

description: elephant seal individual N°4 year 2012
DOI: 10.6084/m9.figshare.12878119.v2
title: Additional file of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells

description: Additional file of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells
DOI: 10.6084/m9.figshare.12878119.v1
title: Additional file of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells

description: Additional file of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells
DOI: 10.6084/m9.figshare.12878119.v3
title: Additional file of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells

description: Additional file of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells
DOI: 10.6084/m9.figshare.12878119.v4
title: Additional file of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells

description: Additional file of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells
DOI: 10.6084/m9.figshare.12878119.v8
title: Additional file of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells

description: Additional file of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells
DOI: 10.6084/m9.figshare.12878119.v5
title: Additional file of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells

description: Additional file of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells
DOI: 10.6084/m9.figshare.12878119.v7
title: Additional file of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells

description: Additional file of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells
DOI: 10.6084/m9.figshare.12878119.v9
title: Additional file of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells

description: Additional file of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells
DOI: 10.6084/m9.figshare.7958747
title: polypharmacy-dataset

description: Polypharmacy side-effects dataset
DOI: 10.6084/m9.figshare.7958756
title: Molecular and morphological identification of two new African species of <i>Dugesia</i> (Platyhelminthes, Tricladida, Dugesiidae) from Cameroon

description: The paper describes two new <i>Dugesia</i> species collected from the rivers Messassi and Ntsetsensooh in Cameroon, representing the first planarian flatworms documented from this country. Based on morphological data, the new species <i>Dugesia bijuga</i> Harrath & Sluys, sp. nov. is characterized mainly by the presence of two diaphragms, a barrel-shaped penis that is traversed by numerous ducts of penis glands and is provided with a short nozzle, and the presence of two atrial folds. The other new species, <i>Dugesia pustulata</i> Harrath & Sluys, sp. nov., is characterized mainly by absence of a penis bulb, presence of a large, elongated and weakly muscular seminal vesicle, and by the ventroposterior section of the bursal canal being thrown into distinct folds. The phylogenetic position of the two new species was determined through a molecular phylogenetic tree, based on a mitochondrial and a nuclear gene, including species from the major geographical range of distribution of the genus <i>Dugesia</i>. The phylogenetic tree revealed that the Cameroon lineage does not constitute a monophyletic group with the other Afrotropical species; it also showed that the African continent may house a great diversity of <i>Dugesia</i> species that still remains to be discovered. urn:lsid:zoobank.org:pub:007441A5-F037-4950-9F5B-AD6ED12A40ED
DOI: 10.6084/m9.figshare.12878119.v6
title: Additional file of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells

description: Additional file of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells
DOI: 10.6084/m9.figshare.12878119.v13
title: Additional file of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells

description: Additional file of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells
DOI: 10.6084/m9.figshare.7958756.v1
title: Molecular and morphological identification of two new African species of <i>Dugesia</i> (Platyhelminthes, Tricladida, Dugesiidae) from Cameroon

description: The paper describes two new <i>Dugesia</i> species collected from the rivers Messassi and Ntsetsensooh in Cameroon, representing the first planarian flatworms documented from this country. Based on morphological data, the new species <i>Dugesia bijuga</i> Harrath & Sluys, sp. nov. is characterized mainly by the presence of two diaphragms, a barrel-shaped penis that is traversed by numerous ducts of penis glands and is provided with a short nozzle, and the presence of two atrial folds. The other new species, <i>Dugesia pustulata</i> Harrath & Sluys, sp. nov., is characterized mainly by absence of a penis bulb, presence of a large, elongated and weakly muscular seminal vesicle, and by the ventroposterior section of the bursal canal being thrown into distinct folds. The phylogenetic position of the two new species was determined through a molecular phylogenetic tree, based on a mitochondrial and a nuclear gene, including species from the major geographical range of distribution of the genus <i>Dugesia</i>. The phylogenetic tree revealed that the Cameroon lineage does not constitute a monophyletic group with the other Afrotropical species; it also showed that the African continent may house a great diversity of <i>Dugesia</i> species that still remains to be discovered. urn:lsid:zoobank.org:pub:007441A5-F037-4950-9F5B-AD6ED12A40ED
DOI: 10.6084/m9.figshare.12878029
title: Additional file 10 of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells

description: Additional File 10: Putative human secondary response genes and the number of DREs in their promoters. A table listing the putative secondary response genes identified from the cycloheximide studies and the number of 5'-GCGTG-3' DRE cores in the region 10 kb upstream and 1 kb downstream of a TSS. (XLS 56 KB)
DOI: 10.6084/m9.figshare.12878032.v1
title: Additional file 11 of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells

description: Additional File 11: Putative mouse secondary response genes and the number of DREs in their promoters. A table listing the putative secondary response genes identified from the cycloheximide studies and the number of 5'-GCGTG-3' DRE cores in the region 10 kb upstream and 1 kb downstream of a TSS. (XLS 39 KB)
DOI: 10.6084/m9.figshare.12878041
title: Additional file 14 of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells

description: Additional File 14: Whole-genome Agilent microarray data from Hepa1c1c7 cells treated with TCDD for 24 hrs. A table containing the expression ratio relative to the time matched vehicle control. P1(t)-values represent posterior probabilities of activity on a per gene basis using the model-based t-value. (XLS 7 MB)
DOI: 10.6084/m9.figshare.12878041.v1
title: Additional file 14 of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells

description: Additional File 14: Whole-genome Agilent microarray data from Hepa1c1c7 cells treated with TCDD for 24 hrs. A table containing the expression ratio relative to the time matched vehicle control. P1(t)-values represent posterior probabilities of activity on a per gene basis using the model-based t-value. (XLS 7 MB)
DOI: 10.6084/m9.figshare.12878032
title: Additional file 11 of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells

description: Additional File 11: Putative mouse secondary response genes and the number of DREs in their promoters. A table listing the putative secondary response genes identified from the cycloheximide studies and the number of 5'-GCGTG-3' DRE cores in the region 10 kb upstream and 1 kb downstream of a TSS. (XLS 39 KB)
DOI: 10.6084/m9.figshare.12878038
title: Additional file 13 of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells

description: Additional File 13: Whole-genome Agilent microarray data from HepG2 cells treated with TCDD for 24 hrs. A table containing the expression ratio relative to the time matched vehicle control. P1(t)-values represent posterior probabilities of activity on a per gene basis using the model-based t-value. (XLS 7 MB)
DOI: 10.6084/m9.figshare.12878119.v22
title: Additional file of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells

description: Additional file of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells
DOI: 10.6084/m9.figshare.12878044.v1
title: Additional file 15 of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells

description: Additional File 15: Whole-genome Agilent microarray data from H4IIE cells treated with TCDD for 24 hrs. A table containing the expression ratio relative to the time matched vehicle control. P1(t)-values represent posterior probabilities of activity on a per gene basis using the model-based t-value. (XLS 6 MB)
DOI: 10.6084/m9.figshare.12878053.v1
title: Additional file 18 of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells

description: Additional File 18: Common differentially regulated orthologs elicited by TCDD in human HepG2 and rat H4IIE cells identified from the whole-genome Agilent microarrays at 24 hrs. A table containing the expression ratios for significantly differentially regulated orthologs (|fold change| &gt; 1.4 and P1(t) &gt; 0.999). (XLS 29 KB)
DOI: 10.6084/m9.figshare.12878050.v1
title: Additional file 17 of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells

description: Additional File 17: Common differentially regulated orthologs elicited by TCDD in rat H4IIE and mouse Hepa1c1c7 cells identified from the whole-genome Agilent microarrays at 24 hrs. A table containing the expression ratios for significantly differentially regulated orthologs (|fold change| &gt; 1.4 and P1(t) &gt; 0.999). (XLS 30 KB)
DOI: 10.6084/m9.figshare.12878119.v11
title: Additional file of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells

description: Additional file of Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells