cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.15060564
title: Rice black-streaked dwarf virus P10 promotes phosphorylation of GAPDH (glyceraldehyde-3-phosphate dehydrogenase) to induce autophagy in <i>Laodelphax striatellus</i>

description: Macroautophagy/autophagy is an important innate and adaptive immune response that can clear microbial pathogens through guiding their degradation. Virus infection in animals and plants is also known to induce autophagy. However, how virus infection induces autophagy is largely unknown. Here, we provide evidence that the early phase of rice black-streaked dwarf virus (RBSDV) infection in <i>Laodelphax striatellus</i> can also induce autophagy, leading to suppression of RBSDV invasion and accumulation. We have determined that the main capsid protein of RBSDV (P10) is the inducer of autophagy. RBSDV P10 can specifically interact with GAPDH (glyceraldehyde-3-phosphate dehydrogenase), both <i>in vitro</i> and <i>in vivo</i>. Silencing of <i>GAPDH</i> in <i>L. striatellus</i> could significantly reduce the activity of autophagy induced by RBSDV infection. Furthermore, our results also showed that both RBSDV infection and RBSDV P10 alone can promote phosphorylation of AMP-activated protein kinase (AMPK), resulting in GAPDH phosphorylation and relocation of GAPDH from the cytoplasm into the nucleus in midgut cells of <i>L. striatellus</i> or Sf9 insect cells. Once inside the nucleus, phosphorylated GAPDH can activate autophagy to suppress virus infection. Together, these data illuminate the mechanism by which RBSDV induces autophagy in <i>L. striatellus</i>, and indicate that the autophagy pathway in an insect vector participates in the anti-RBSDV innate immune response. <b>Abbreviations</b>3-MA: 3-methyladenine; AMPK: AMP-activated protein kinase; ATG: autophagy-related; co-IP: co-immunoprecipitation; DAPI: 4ʹ,6-diamidino-2-phenylindole; dpf: days post-feeding; dsRNA: double-stranded RNA; GAPDH: glyceraldehyde-3-phosphate dehydrogenase; GST: glutathione-S-transferase; RBSDV: Rice black-streaked dwarf virus; TEM: transmission electron microscope.
DOI: 10.6084/m9.figshare.19254867.v1
title: Additional file 15 of Splicing factor derived circular RNA circCAMSAP1 accelerates nasopharyngeal carcinoma tumorigenesis via a SERPINH1/c-Myc positive feedback loop

description: Additional file 15: Table S5. The top 20 circRNAs according to their RPM values in 41 NPC tissues from the GSE68799 database.
DOI: 10.6084/m9.figshare.20295694.v1
title: Additional file 12 of Overdominant expression of related genes of ion homeostasis improves K+ content advantage in hybrid tobacco leaves

description: Additional file 12. Primers used in this study.
DOI: 10.6084/m9.figshare.20295684
title: Additional file 3 of A de novo assembled high-quality chromosome-scale Trifolium pratense genome and fine-scale phylogenetic analysis

description: Additional file 3: Table S3. The genes in red clover under positive selection were described (including their GO terms) and their numbers.
DOI: 10.6084/m9.figshare.20295727
title: Additional file 8 of Overdominant expression of related genes of ion homeostasis improves K+ content advantage in hybrid tobacco leaves

description: Additional file 8. Go Enrichment of up-regulated overdominant expression in H hybrid and down-regulated overdominant gene in L hybrid.
DOI: 10.6084/m9.figshare.16633310
title: Additional file 9 of Transcriptomic analysis of salt tolerance-associated genes and diversity analysis using indel markers in yardlong bean (Vigna unguiculata ssp. sesquipedialis)

description: Additional file 9: Supplementary Table S9. TFs that are up- or down-regulated in both Suzi 41 and Sujiang 1419.
DOI: 10.6084/m9.figshare.20295678.v1
title: Additional file 1 of A de novo assembled high-quality chromosome-scale Trifolium pratense genome and fine-scale phylogenetic analysis

description: Additional file 1: Table S1. GO, eggNOG, NR, KEGG and SP annotation results.
DOI: 10.6084/m9.figshare.20295700
title: Additional file 14 of Overdominant expression of related genes of ion homeostasis improves K+ content advantage in hybrid tobacco leaves

description: Additional file 14. The biomass of H hybrid and parents.
DOI: 10.6084/m9.figshare.20295730
title: Additional file 9 of Overdominant expression of related genes of ion homeostasis improves K+ content advantage in hybrid tobacco leaves

description: Additional file 9. Identification of potassium channel and potassium transport related genes in tobacco leaves.
DOI: 10.6084/m9.figshare.16633301
title: Additional file 6 of Transcriptomic analysis of salt tolerance-associated genes and diversity analysis using indel markers in yardlong bean (Vigna unguiculata ssp. sesquipedialis)

description: Additional file 6: Supplementary Table S6. GO analysis of DEGs induced by salt stress in Suzi 41 and Sujiang 1419.
DOI: 10.6084/m9.figshare.17157790.v1
title: Tea extracts inhibit the attachment of streptococci to oral/dental substrata by reducing hydrogen bonding energies

description: Previous work in the authors’ lab demonstrated that tea extracts significantly suppressed streptococcal colonization of abiotic substrata by coating the bacterial cell surfaces with tea components. In this study, the physico-chemical mechanisms by which the tea coating inhibits cellular attachment are demonstrated. The changes in the cell surface physico-chemical properties of streptococci, induced by tea extracts, were measured. Using these results, surface interaction energies were calculated between streptococcal cells and hard surfaces (glass, stainless steel, hydroxyapatite and titanium) within the cellular attachment system exploiting the extended Derjaguin-Landau-Verwey-Overbeek theory. The net energy outcomes were compared with experiment results of attachment assays to validate the predictability of the model. The results showed that the tea extracts inhibited the attachment of the bacteria by 11.1%–91.5%, and reduced the interaction energy by 15.4%–94.9%. It was also demonstrated that the abilities of the bacteria to attach to hard surfaces correlated well with their net interaction energies. The predominant interaction in the systems was found to be hydrogen bonding. In conclusion, tea extracts suppress streptococcal attachment to hard substrata by limiting the formation of hydrogen bonds.
DOI: 10.6084/m9.figshare.20295681
title: Additional file 2 of A de novo assembled high-quality chromosome-scale Trifolium pratense genome and fine-scale phylogenetic analysis

description: Additional file 2: Table S2. The gene families described (including their GO terms) and their numbers between red clover and the gene family expansion in red clover.
DOI: 10.6084/m9.figshare.20295678
title: Additional file 1 of A de novo assembled high-quality chromosome-scale Trifolium pratense genome and fine-scale phylogenetic analysis

description: Additional file 1: Table S1. GO, eggNOG, NR, KEGG and SP annotation results.
DOI: 10.6084/m9.figshare.20295709.v1
title: Additional file 3 of Overdominant expression of related genes of ion homeostasis improves K+ content advantage in hybrid tobacco leaves

description: Additional file 3. Transcriptome quality control data.
DOI: 10.6084/m9.figshare.20295712
title: Additional file 4 of Overdominant expression of related genes of ion homeostasis improves K+ content advantage in hybrid tobacco leaves

description: Additional file 4. Gene differential expression analysis.
DOI: 10.6084/m9.figshare.20295684.v1
title: Additional file 3 of A de novo assembled high-quality chromosome-scale Trifolium pratense genome and fine-scale phylogenetic analysis

description: Additional file 3: Table S3. The genes in red clover under positive selection were described (including their GO terms) and their numbers.
DOI: 10.15468/dl.8m7634
title: Occurrence Download

description: A dataset containing 153 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Daphne rodriguezii Texidor"
 ]
}

 The dataset includes 153 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022508-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d2kmhe
title: Occurrence Download

description: A dataset containing 437 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Scheuchzeria palustris var. americana Fernald"
 ]
}

 The dataset includes 437 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013585-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yvwrs9
title: Occurrence Download

description: A dataset containing 1136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pleroma heteromallum (D.Don) D.Don"
 ]
}

 The dataset includes 1136 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039149-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wj8m6j
title: Occurrence Download

description: A dataset containing 4037 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scinax staufferi (Cope, 1865)"
 ]
}

 The dataset includes 4037 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004425-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n1h9rf
title: Occurrence Download

description: A dataset containing 347 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Priodontes maximus (Kerr, 1792)"
 ]
}

 The dataset includes 347 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007642-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bskjbx
title: Occurrence Download

description: A dataset containing 171 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bergbambos Stapleton"
 ]
}

 The dataset includes 171 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047592-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.grbjmn
title: Occurrence Download

description: A dataset containing 1476 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Actinidia chinensis Planch."
 ]
}

 The dataset includes 1476 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004425-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rtyveo
title: Occurrence Download

description: A dataset containing 509 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parasudis truculenta (Goode & Bean, 1896)"
 ]
}

 The dataset includes 509 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007643-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4rrmex
title: Occurrence Download

description: A dataset containing 363 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acerodon jubatus (Eschscholtz, 1831)"
 ]
}

 The dataset includes 363 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055490-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.syvriy
title: Occurrence Download

description: A dataset containing 310 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Umgebung der Gesamtschule Hamburg-Winterhude"
 ]
}

 The dataset includes 310 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004425-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s2a6if
title: Occurrence Download

description: A dataset containing 185208 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Archaea",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 185208 records from 422 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007648-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.meic04
title: Occurrence Download

description: A dataset containing 383 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((75.9375 16.636191878397664, 103.35937499999999 3.5134210456400448, 129.375 17.97873309555617, 134.296875 40.97989806962013, 127.96875 47.989921667414194, 90.703125 47.517200697839414, 67.5 47.517200697839414, 75.9375 16.636191878397664))",
 "HasCoordinate is true",
 "TaxonKey is Pseudotsuga sinensis Dode",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 383 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004425-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nzcv37
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chylismia confertiflora (P.H.Raven) W.L.Wagner & Hoch"
 ]
}

 The dataset includes 6 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0137737-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mtjpsq
title: Occurrence Download

description: A dataset containing 123143 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Canis lupus Linnaeus, 1758"
 ]
}

 The dataset includes 123143 records from 310 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007644-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yci20m
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Crotalus ravus Cope, 1865"
 ]
}

 The dataset includes 55 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004425-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.efm887
title: Occurrence Download

description: A dataset containing 2152 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chthonocephalus muellerianus (Sond.) P.S.Short"
 ]
}

 The dataset includes 2152 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0137719-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.94hibh
title: Occurrence Download

description: A dataset containing 5912 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Baccharis halimifolia L."
 ]
}

 The dataset includes 5912 records from 147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014883-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/czydrb
title: CardObs : Observations naturalistes issues de l'outil CardObs-Données naturalistes de PHILIPPE christophe

description: données naturalistes correspondant à des captures d'Anthophila et détermination sous loupe binoculaire pour différents départements
DOI: 10.15468/dl.zi6679
title: Occurrence Download

description: A dataset containing 630 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidobatrachus Budgett, 1899"
 ]
}

 The dataset includes 630 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004425-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uennv5
title: Occurrence Download

description: A dataset containing 1190 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chthonocephalus pseudevax Steetz"
 ]
}

 The dataset includes 1190 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0137722-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ucstf6
title: Occurrence Download

description: A dataset containing 185226 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Archaea",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 185226 records from 422 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007647-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh0956504.10fu
title: SH0956504.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0956505.10fu
title: SH0956505.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0956506.10fu
title: SH0956506.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0956507.10fu
title: SH0956507.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0956508.10fu
title: SH0956508.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.