cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4749256
title: Effects of Chromolaena odorata on mammalian biodiversity in Hluhluwe-iMfolozi Park, South Africa

description: This study investigated the effects of the Triffid weed Chromolaena odorata on small and large mammals in Hluhluwe-iMfolozi Park. C. odorata is a widespread invasive alien plant that poses threat to the highly maintained natural vegetation in HiP and most other protected areas in KwaZulu-Natal. Following the opinion that the effects of invasive alien plants on all levels of biodiversity need to be recognised for their effective control, we compared small and large mammal species richness and diversity between areas with differing C. odorata invasion durations, areas with differing clearing times and an area with no history of invasion as a control area. Small mammal trapping was done using Sherman live traps and mark-recapture techniques. Track counts were used to estimate large mammal species abundance, richness and diversity. The control area had higher small mammal species richness and diversity than the invaded areas, which suggests that invaded areas were not suitable habitats for small mammals. It was also found that small and large mammal species richness and diversity decreased with the increase in invasion duration, which shows that the more time C. odorata is left to establish the more disturbance it causes to the habitat. We found the uninvaded treatment to have the highest diversity of large mammal species than all the invaded treatments, which suggests that large mammalian species show some degree of avoidance to the invaded areas. We also found that there were significant differences between the treatments with regard to large mammal species diversity indices. Some of the large mammalian species appeared to neither avoid nor prefer invaded areas. It is hypothesized that they use invaded areas to hide away from predators as most of them fall prey to many carnivores. Also, C. odorata invaded areas could provide suitable shelter from climatic extremes. The treatments cleared of C. odorata showed an increase in both small and large mammalian species richness and diversity, suggesting that clearing of this plant helps in rehabilitation of the ecosystem. However, large mammal species composition in the cleared treatments remained different to pre-invasion state, which suggests that the habitat may remain changed for a long time after clearing. Managers of conservation areas should therefore prioritise alien plant removal in order to maintain healthy ecosystems.
DOI: 10.12751/g-node.hmzqun
title: Left and right hand motion imagination experiment data set

description: Data Set Description This data set consists of EEG data from 9 subjects. Respectively S1, S2, S3 and S4. The experiment's content is to imagine using the left and right hands to press the prompt lights. The experiment interface has two reminders on the left and right. When the reminder on one side is on, imagine using that side hand to press the lit reminder. A complete experiment is a block, and each experimenter completes six blocks in three days. Each block contains continuously collected EEG data and contains 20 left and right hands random motion imagination tasks. Each imagination is a trial, and each trial has a duration of 7.5 seconds. In a single block, there are left and right hands imagination task 10 times each. At the beginning of the experiment, the experimenter will enter the target reminder stage. At this stage, one of the reminders will flash on the screen to remind the experimenter that this trial's motor imagination task is left-hand or right-hand, and the duration is 1.5 seconds. Then it is the motor imagination stage. During the motor imagination process, the indicator light will remain on, and the experimenter will start to imagine the left or right-hand motor. After the motor imagination phase, the experimenter will have a rest period of 2 seconds. A Trigger signal will be recorded at the beginning and end of a single trial of motor imagery, which serves as an indicator for the sorting of experimental data. Data recording The experiment uses NeuSen W Wireless EEG Acquisition System of Neuracle Company. All data sets are stored in the “.mat” file and can be loaded with Matlab. The data sampling rate is 250Hz. Each “.mat” file represents a trial, containing 20 blocks. The 20 blocks contain 10 left-hand tasks and 10 right-hand tasks. Each participant completed 6 trials. The label of the data is on line 65 of each “.mat” file. The label “252” represents the beginning of the block, “253” represents the end of the block, “1” represents the beginning of left-hand motor imagination, “2” represents the beginning of right-hand motor imagination, and “251” represents the end of trial.
DOI: 10.5281/zenodo.1475292
title: Characterization of NADH fluorescence properties under one-photon excitation with respect to temperature, pH and binding to lactate dehydrogenase

description: Raw data of paper entitled "Characterisation of NADH fluorescence properties under different environmental conditions and single-photon excitation" Abstract Reduced nicotinamide adenine dinucleotide (NADH) is the principal electron donor in glycolysis and oxidative metabolism and is thus recognized as a key biomarker for probing metabolic state. While the fluorescence characteristics of NADH have been investigated extensively, there are discrepancies in the published data due to diverse experimental conditions, instrumentation and microenvironmental parameters that can affect NADH fluorescence. Using a cuvette-based time-resolved spectrofluorimeter employing single-photon excitation at 375 nm, we characterised the fluorescence intensity, lifetime, spectral response, anisotropy and time-resolved anisotropy of NADH in aqueous solution under varying microenvironmental conditions, namely temperature, pH, and binding partners. Our results demonstrate how temperature, pH, and binding partners each impact the fluorescence signature of NADH and highlight the complexity of the fluorescence data when different parameters produce competing effects. We hope that the data presented in this study will provide a reference for potential sources of variation in experiments measuring NADH fluorescence.
DOI: 10.5281/zenodo.1227281
title: Characterization of NADH fluorescence properties under one-photon excitation with respect to temperature, pH and binding to lactate dehydrogenase

description: Raw data of paper entitled "Characterisation of NADH fluorescence properties under different environmental conditions and single-photon excitation" Abstract Reduced nicotinamide adenine dinucleotide (NADH) is the principal electron donor in glycolysis and oxidative metabolism and is thus recognized as a key biomarker for probing metabolic state. While the fluorescence characteristics of NADH have been investigated extensively, there are discrepancies in the published data due to diverse experimental conditions, instrumentation and microenvironmental parameters that can affect NADH fluorescence. Using a cuvette-based time-resolved spectrofluorimeter employing single-photon excitation at 375 nm, we characterised the fluorescence intensity, lifetime, spectral response, anisotropy and time-resolved anisotropy of NADH in aqueous solution under varying microenvironmental conditions, namely temperature, pH, and binding partners. Our results demonstrate how temperature, pH, and binding partners each impact the fluorescence signature of NADH and highlight the complexity of the fluorescence data when different parameters produce competing effects. We hope that the data presented in this study will provide a reference for potential sources of variation in experiments measuring NADH fluorescence.
DOI: 10.6084/m9.figshare.14424188
title: Table 1 and 2 Supplements.docx

description: Table 1. Data represents functional electrical stimulation leg cycling oxygen uptake in persons with spinal cord injury following 12-16 weeks of either electrically evoked resistance training or passive movement training. Table 2 Mitochondrial respiration rates of different complexes following either electrically evoked resistance training or passive movement training in persons with spinal cord injury.
DOI: 10.6084/m9.figshare.14573019
title: Traits Data Duchini et al

description: This spreadsheet contains data of several functional traits collected in a experiment with monocultures and a mixture of them
DOI: 10.6084/m9.figshare.14573019.v1
title: Traits Data Duchini et al

description: This spreadsheet contains data of several functional traits collected in a experiment with monocultures and a mixture of them
DOI: 10.34740/kaggle/dsv/2221699
title: Nepal ICU and Ventilators Occupancy for COVID
DOI: 10.25387/g3.14043623
title: Supplemental Material for Conover, Sharbrough, and Wendel, 2021

description: This contains the alignments, model selection files, resulting gene trees, and an overview file of over 17,000 orthologous groups in the Gossypieae identified by pSONIC. This supplemental file is part of the manuscript submission.
DOI: 10.25387/g3.14043623.v1
title: Supplemental Material for Conover, Sharbrough, and Wendel, 2021

description: This contains the alignments, model selection files, resulting gene trees, and an overview file of over 17,000 orthologous groups in the Gossypieae identified by pSONIC. This supplemental file is part of the manuscript submission.
DOI: 10.5286/isis.e.rb2000258
title: Neutron diffraction characterization of a tyrosine-containing multi-phase self-assembled complex

description: Water molecules are vital in the developments of hierarchical, dynamic and orderly assembled structures from simple amino-acid molecular aggregates, to biomolecules like proteins and peptides. Although the exploration and understanding of the role of water in these condensates is constantly being investigated, the process of water regulation and the possible multi-phase structures due to the presence of water have not been fully understood. This work has the aim of characterising the structural and compositional changes in the N-Carbobenzyloxy-L-tyrosine/water complex as a function of temperature, which is critical to understand the molecular mechanisms behind such self-assembly phenomena involving amino-acids and the extent of the interactions with water molecules.
DOI: 10.5286/isis.e.rb2000258-1
title: Neutron diffraction characterization of a tyrosine-containing multi-phase self-assembled complex

description: Water molecules are vital in the developments of hierarchical, dynamic and orderly assembled structures from simple amino-acid molecular aggregates, to biomolecules like proteins and peptides. Although the exploration and understanding of the role of water in these condensates is constantly being investigated, the process of water regulation and the possible multi-phase structures due to the presence of water have not been fully understood. This work has the aim of characterising the structural and compositional changes in the N-Carbobenzyloxy-L-tyrosine/water complex as a function of temperature, which is critical to understand the molecular mechanisms behind such self-assembly phenomena involving amino-acids and the extent of the interactions with water molecules.
DOI: 10.6084/m9.figshare.14573127
title: Patient Awareness Survey Questions

description: 23 questions that were asked in an online survey for patients with Rheumatic diseases
DOI: 10.6084/m9.figshare.14573127.v1
title: Patient Awareness Survey Questions

description: 23 questions that were asked in an online survey for patients with Rheumatic diseases
DOI: 10.5281/zenodo.4748993
title: HyRAD-X exome capture museomics unfolds giant ground beetle evolution

description: This dataset contains all final files from the study entitled "<em>HyRAD-X exome capture museomics unfolds giant ground beetle evolution</em>" and published in <em>Genome Biology and Evolution</em>. To access the raw data of the HyRAD-X project please go to the SRA database and look for the <strong>BioProject ID PRJNA706141</strong>. <strong>Phylogenomic Datasets and partitioning schemes used in the study:</strong> A_2945_BWA_MEM_loci_43_Taxa.phy / HyRAD-X Dataset A <br> A_2945_BWA_MEM_loci_partition.nex / Partitioning scheme for Dataset A<br> B_2945_BWA_MEM_loci_40_Taxa.phy / HyRAD-X Dataset B <br> C_1227_BWA_ALN_loci_40_Taxa.phy / Partitioning scheme for Dataset B <br> C_1227_BWA_ALN_loci_partition.nex / HyRAD-X Dataset C <br> D_100_BWA_MEM_loci_43_Taxa.phy / HyRAD-X Dataset D <br> D_100_BWA_MEM_loci_partition.nex / Partitioning scheme for Dataset D <br> E_MtGenomes_60_Taxa.phy / Mitogenomic Dataset E <br> E_MtGenomes_partition.nex / Partitioning scheme for Dataset E <strong>Divergence time estimation datasets used in the study: </strong> HyRAD-X_BEAST_100loci_SortaDate.nex / Input alignment for BEAST analysis based on SortaDate selection <br> HyRAD-X_BEAST_100loci_SortaDate_BD_1C_2F2SC_40TAX.xml / XML input file for BEAST <br> HyRAD-X_BEAST_100loci_SortaDate_BD_7C_2F2SC_40TAX.xml / XML input file for BEAST <br> HyRAD-X_BEAST_100loci_SortaDate_Yule_1C_2F2SC_40TAX.xml / XML input file for BEAST <br> HyRAD-X_BEAST_100loci_SortaDate_Yule_7C_2F2SC_40TAX.xml / XML input file for BEAST <strong>Final tree files used in the study: </strong> ML Phylogeny Dataset A BWA MEM 43 Taxa.tre / .tre file from best scoring IQ-TREE ML search using Dataset A <br> ML Phylogeny Dataset B BWA MEM 40 Taxa.tre / .tre file from best scoring IQ-TREE ML search using Dataset B <br> ML Phylogeny Dataset C BWA ALN 40 Taxa.tre / .tre file from best scoring IQ-TREE ML search using Dataset C <br> ML Phylogeny Dataset D BWA MEM SortaDate 43 Taxa.tre / .tre file from best scoring IQ-TREE ML search using Dataset D <br> ML Phylogeny Dataset E Mitogenomes.tre / .tre file from best scoring IQ-TREE ML search using Dataset E <br> Bayesian BEAST MCC Tree Yule 7C.tre / .tre file from best scoring BEAST analysis For any additional information feel free to contact us at: <strong>Emmanuel.Toussaint@ville-ge.ch</strong>
description: {"references": ["Toussaint et al. (2021) HyRAD-X exome capture museomics unfolds giant ground beetle evolution. Genome Biology and Evolution"]}
DOI: 10.5281/zenodo.4748992
title: HyRAD-X exome capture museomics unfolds giant ground beetle evolution

description: This dataset contains all final files from the study entitled "<em>HyRAD-X exome capture museomics unfolds giant ground beetle evolution</em>" and published in <em>Genome Biology and Evolution</em>. To access the raw data of the HyRAD-X project please go to the SRA database and look for the <strong>BioProject ID PRJNA706141</strong>. <strong>Phylogenomic Datasets and partitioning schemes used in the study:</strong> A_2945_BWA_MEM_loci_43_Taxa.phy / HyRAD-X Dataset A <br> A_2945_BWA_MEM_loci_partition.nex / Partitioning scheme for Dataset A<br> B_2945_BWA_MEM_loci_40_Taxa.phy / HyRAD-X Dataset B <br> C_1227_BWA_ALN_loci_40_Taxa.phy / Partitioning scheme for Dataset B <br> C_1227_BWA_ALN_loci_partition.nex / HyRAD-X Dataset C <br> D_100_BWA_MEM_loci_43_Taxa.phy / HyRAD-X Dataset D <br> D_100_BWA_MEM_loci_partition.nex / Partitioning scheme for Dataset D <br> E_MtGenomes_60_Taxa.phy / Mitogenomic Dataset E <br> E_MtGenomes_partition.nex / Partitioning scheme for Dataset E <strong>Divergence time estimation datasets used in the study: </strong> HyRAD-X_BEAST_100loci_SortaDate.nex / Input alignment for BEAST analysis based on SortaDate selection <br> HyRAD-X_BEAST_100loci_SortaDate_BD_1C_2F2SC_40TAX.xml / XML input file for BEAST <br> HyRAD-X_BEAST_100loci_SortaDate_BD_7C_2F2SC_40TAX.xml / XML input file for BEAST <br> HyRAD-X_BEAST_100loci_SortaDate_Yule_1C_2F2SC_40TAX.xml / XML input file for BEAST <br> HyRAD-X_BEAST_100loci_SortaDate_Yule_7C_2F2SC_40TAX.xml / XML input file for BEAST <strong>Final tree files used in the study: </strong> ML Phylogeny Dataset A BWA MEM 43 Taxa.tre / .tre file from best scoring IQ-TREE ML search using Dataset A <br> ML Phylogeny Dataset B BWA MEM 40 Taxa.tre / .tre file from best scoring IQ-TREE ML search using Dataset B <br> ML Phylogeny Dataset C BWA ALN 40 Taxa.tre / .tre file from best scoring IQ-TREE ML search using Dataset C <br> ML Phylogeny Dataset D BWA MEM SortaDate 43 Taxa.tre / .tre file from best scoring IQ-TREE ML search using Dataset D <br> ML Phylogeny Dataset E Mitogenomes.tre / .tre file from best scoring IQ-TREE ML search using Dataset E <br> Bayesian BEAST MCC Tree Yule 7C.tre / .tre file from best scoring BEAST analysis For any additional information feel free to contact us at: <strong>Emmanuel.Toussaint@ville-ge.ch</strong>
description: {"references": ["Toussaint et al. (2021) HyRAD-X exome capture museomics unfolds giant ground beetle evolution. Genome Biology and Evolution"]}
DOI: 10.5517/ccdc.csd.cc23w2kn
title: CCDC 1962441: Experimental Crystal Structure Determination

description: Related Article: Jun-Hao Wang, Meng-Na Li, Shu Yan, Ying Zhang, Cong-Cong Liang, Xian-Ming Zhang, Yue-Biao Zhang|2020|Inorg.Chem.|59|2961|doi:10.1021/acs.inorgchem.9b03316
DOI: 10.5517/ccdc.csd.cc274bb2
title: CCDC 2059743: Experimental Crystal Structure Determination

description: Related Article: Yu Gong, Wang-Kang Han, Hui-Shu Lu, Qing-Tao Hu, Huan Tu, Pei-Ni Li, Xiaodong Yan, Zhi-Guo Gu|2021|J.Mater.Chem.C|9|5082|doi:10.1039/D1TC00470K
DOI: 10.5517/ccdc.csd.cc274c92
title: CSD 2059773: Experimental Crystal Structure Determination

description: Related Article: Yanqiang Li, Zhengyang Zhou, Sangen Zhao, Fei Liang, Qingran Ding, Junliang Sun, Zheshuai Lin, Maochun Hong, Junhua Luo|2021|Angew.Chem.,Int.Ed.|60|11457|doi:10.1002/anie.202102107
DOI: 10.5517/ccdc.csd.cc274c3w
title: CSD 2059767: Experimental Crystal Structure Determination

description: Related Article: Yanqiang Li, Zhengyang Zhou, Sangen Zhao, Fei Liang, Qingran Ding, Junliang Sun, Zheshuai Lin, Maochun Hong, Junhua Luo|2021|Angew.Chem.,Int.Ed.|60|11457|doi:10.1002/anie.202102107
DOI: 10.6084/m9.figshare.14573031.v1
title: Supplementary Table 1

description: the right hip joint was extended on the sagittal plane to measure hip extension RoM at 15° of hip abduction. By referring the moment used for passive knee extension RoM measurement (Kaneguchi et al., 2017a), hip extension moments of 7.5, 15, and 22.5 N•mm (approximately 50%, 100%, and 150% of knee extension moment) were applied by pushing the point in the thigh 3 cm distal to the greater trochanter with forces of 0.25, 0.5, and 0.75 N using a force gauge (AD-4932A-50N; A&D, Tokyo, Japan) in a stepwise manner (Supplement Fig. 1B)[小澤 淳也1] [南本2] . To evaluate the contribution of each muscle to myogenic contracture, hip extension RoM was measured after serial myotomy of different hip flexor muscles in the order from the superficial to the deep layers as follows: (1) before myotomy (M+RoM); and after myotomy of the (2) tensor fascia lata (TFL-RoM); (3) quadriceps muscle (Quad-RoM); (4) iliopsoas muscle (Iliop-RoM); and (5) all periarticular muscles (M-RoM). [小澤 淳也1]削除かサプリメントか [南本2]Supplementにします
DOI: 10.6084/m9.figshare.14573031
title: Supplementary Table 1

description: the right hip joint was extended on the sagittal plane to measure hip extension RoM at 15° of hip abduction. By referring the moment used for passive knee extension RoM measurement (Kaneguchi et al., 2017a), hip extension moments of 7.5, 15, and 22.5 N•mm (approximately 50%, 100%, and 150% of knee extension moment) were applied by pushing the point in the thigh 3 cm distal to the greater trochanter with forces of 0.25, 0.5, and 0.75 N using a force gauge (AD-4932A-50N; A&D, Tokyo, Japan) in a stepwise manner (Supplement Fig. 1B)[小澤 淳也1] [南本2] . To evaluate the contribution of each muscle to myogenic contracture, hip extension RoM was measured after serial myotomy of different hip flexor muscles in the order from the superficial to the deep layers as follows: (1) before myotomy (M+RoM); and after myotomy of the (2) tensor fascia lata (TFL-RoM); (3) quadriceps muscle (Quad-RoM); (4) iliopsoas muscle (Iliop-RoM); and (5) all periarticular muscles (M-RoM). [小澤 淳也1]削除かサプリメントか [南本2]Supplementにします
DOI: 10.3886/e130465v1
title: Data and Code for: Promoting Female Interest in Economics: Limits to Nudges

description: Experiment to test effect of information and encouragement about majoring in Economics among US university students.
description: Response Rates: 100% of study participants
description: Economics Principles students at Oregon State University.
description: We cannot post data for this project because our agreement with the Oregon State University Office of the Registrar, which provided the student data used in the paper, precludes us from sharing the data. This agreement rests on the Registrar’s interpretation of the Family Educational Rights and Privacy Act (FERPA) and applies even to student data without private identifying information.
DOI: 10.5281/zenodo.4749122
title: Dataset on the Effects of Anti-Insect Nets of Different Porosity on Mineral and Organic Acid Profile of Cucurbita pepo L. Fruits and Leaves

description: The present dataset supports the paper of Formisano et al., (2020) that investigates on the effects of two 50-mesh insect nets with different porosity on yield and quality attributes of zucchini squash (<em>Cucurbita pepo</em> L.) fruits. The original paper was published in Plants MDPI journal and can be found at https://doi.org/10.3390/plants9101264. The present dataset provides additional information about the effects of insect nets with different porosity on the accumulation of minerals and organic acids in zucchini leaves and fruits. The data presented in this dataset are organized in a Microsoft Excel file named "Dataset_ zucchini squash.xlsx". The workbook has two spreadsheets (e.g., “leaves” and “fruits”) with the same data layout, distributed in thirteen columns (from letters A to M) and ten rows. Specifically: Column A: Treatments (“No-net”, “50 mesh AP”, and "50 mesh”. Column B: number of replicates for each treatment. Column C: total nitrogen content determined by the Kjeldahl method Column D to column M: concentrations of NO<sub>3</sub>, K, PO<sub>4</sub>, SO<sub>4</sub>, Ca, Mg, Cl, Na, malate, and citrate
DOI: 10.5281/zenodo.4749121
title: Dataset on the Effects of Anti-Insect Nets of Different Porosity on Mineral and Organic Acid Profile of Cucurbita pepo L. Fruits and Leaves

description: The present dataset supports the paper of Formisano et al., (2020) that investigates on the effects of two 50-mesh insect nets with different porosity on yield and quality attributes of zucchini squash (<em>Cucurbita pepo</em> L.) fruits. The original paper was published in Plants MDPI journal and can be found at https://doi.org/10.3390/plants9101264. The present dataset provides additional information about the effects of insect nets with different porosity on the accumulation of minerals and organic acids in zucchini leaves and fruits. The data presented in this dataset are organized in a Microsoft Excel file named "Dataset_ zucchini squash.xlsx". The workbook has two spreadsheets (e.g., “leaves” and “fruits”) with the same data layout, distributed in thirteen columns (from letters A to M) and ten rows. Specifically: Column A: Treatments (“No-net”, “50 mesh AP”, and "50 mesh”. Column B: number of replicates for each treatment. Column C: total nitrogen content determined by the Kjeldahl method Column D to column M: concentrations of NO<sub>3</sub>, K, PO<sub>4</sub>, SO<sub>4</sub>, Ca, Mg, Cl, Na, malate, and citrate
DOI: 10.3886/e137242
title: Data and Code for: Secured Transactions Laws and Economic Development on American Indian Reservations

description: <br>In this paper, we compare the economic benefits of adopting selectively modified secured transactions laws relative to the benefits of adopting approximately uniform state transaction laws.<br><br>
DOI: 10.3886/e137242v1
title: Data and Code for: Secured Transactions Laws and Economic Development on American Indian Reservations

description: <br>In this paper, we compare the economic benefits of adopting selectively modified secured transactions laws relative to the benefits of adopting approximately uniform state transaction laws.<br><br>