cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/b88324bad507a400095981d10ae33563
title: Monthly average of sea level measurements from San Diego Harbor, the sea level average seasonal cycle, and the long term trend are presented, 1906 - March 2017 (ongoing).

description: Monthly average sea level measurements, and derived sea-level anomolies from San Diego Harbor's station (32°42.80N, 117°10.40W) is obtained from the University of Hawai’i Sea Level Center. The sea level average seasonal cycle and the long term trend are calculated (mm) from the monthly averages obtained from the GLOSS/CLIVAR (formerly known as the WOCE) "fast" sea level database - University of Hawaii Sea Level Center. The resulting anomalies of de-trended sea level are used as a mid-latitude index of El Niño.
DOI: 10.13026/32x9-wv38
title: Paediatric Intensive Care database

description: The Paediatric Intensive Care (PIC) database is a large paediatric-specific,
single-center, bilingual database comprising information relating to children
admitted to critical care units at a large children's hospital in China. The
database is de-identified and includes vital sign measurements, medications,
laboratory measurements, fluid balance recordings, diagnostic codes,
demographic information, and more. The data are publicly available after
credentialing, which includes completion of a training course on research with
human subjects and signing of a data use agreement mandating responsible
handling of the data and adherence to the principle of collaborative research.
The PIC database builds upon the success of the widely used MIMIC (Medical
Information Mart for Intensive Care) database, and extends the approach into
the field of paediatric critical care. The database has many unique
characteristics which support academic and industrial research including the
development of machine learning algorithms, clinical decision support tools,
quality improvement initiatives, and international data sharing.
DOI: 10.17188/1197543
title: Materials Data on SnS by Materials Project

description: SnS is Hittorf-derived structured and crystallizes in the orthorhombic Pnma space group. The structure is two-dimensional and consists of two SnS sheets oriented in the (0, 0, 1) direction. Sn2+ is bonded in a distorted T-shaped geometry to three equivalent S2- atoms. There are one shorter (2.66 Å) and two longer (2.69 Å) Sn–S bond lengths. S2- is bonded in a trigonal non-coplanar geometry to three equivalent Sn2+ atoms.
DOI: 10.17603/ds2mw2r
title: Ottawa F-65 Sand Data from Ana Maria Parra Bastidas
title: Ottawa F-65 Index Properties and element Test Data

description: Characterization of Ottawa F-65 sand performed by Ana Maria Parra Bastidas.
DOI: 10.4225/08/59475c67be7a4
title: CSIRO Permanent Rainforest Plots of North Queensland

description: We present repeated stem measurement data from 20, 0.5 ha (100 m x 50 m) permanent rainforest plots in northern Queensland, Australia from 1971 to 2013.  The plots have a rainfall range of 1200 to 3500 mm, represent eleven vegetation types, six parent materials, and range from 15 m to 1200 m above sea level. Except for minor disturbances associated with selective logging on two plots, the plots were established in old growth forest and all plots have thereafter been protected. Plots were regularly censused and at each census the diameter at breast height (DBH) of all stems ≥10 cm DBH were recorded.  Data is presented for 10998 individual stems with plot stem densities at establishment ranging from 476 to 1104 stems ha-1.  Due to the wide geographical range of the plots, no species dominate, although the families Lauraceae, Rutaceae and Myrtaceae contribute a large number of species. Basal area values at establishment ranged from 28.6 to 63.3 m2 ha-1 and showed no trend of increasing or decreasing over time due mainly to regular disturbance and recovery from natural events such as cyclones.  In addition to stems ≥10 cm DBH data, we present height data, floristic data from understory stems (≥50 cm height to &lt;10 cm DBH), an auxiliary species list (including vines, epiphytes, ferns, grasses, herbs and other life forms), and a list of voucher specimens lodged in herbaria. The data collected from the 20 plots provides an insight into the floristics, structure and long term forest dynamics of Australian tropical rainforests and allows direct comparisons to be made with long-term monitoring plots at a global scale.
DOI: 10.5281/zenodo.5773910
title: A novel method for measuring sublingual temperature using conventional non-contact forehead thermometer

description: Dataset includes : 1. Data file - Excel spread sheet including recorded non contact sublingual recordings with corresponding tympanic temperature recordings. 2.Consent form.
DOI: 10.5281/zenodo.6655001
title: Data of Water Vapor Flux-Profile Relationship in the Stable Boundary Layer over the Sea Surface

description: data and code for paper 'Water Vapor Flux-Profile Relationship in the Stable Boundary Layer over the Sea Surface'
DOI: 10.13012/b2idb-9950442_v1
title: Raman spectra of individual, living hematopoietic stem and progenitor cells

description: This dataset contains Raman spectra, each acquired from an individual, living, primary murine cell belonging to one of the six most immature hematopoietic cell populations found in the body: hematopoietic stem cell (HSC), mutipotent progenitor 1 (MPP1), multipotent progenitor 2 (MPP2), multipotent progenitor 3 (MPP3), common lymphoid progenitor, common myeloid progenitor (CLP). These spectra are useful for identifying spectral signatures that are characteristic of each hematopoietic stem or early progenitor cell population. *NOTE: __MACOSX folder and files start with “._[file name]” found in "Raman spectra of single cells text files.zip" were created by the computer operation system, in unreadable format, which are not part of the data and can be removed/ignored when using the data.
DOI: 10.17188/1284598
title: Materials Data on SnSe by Materials Project

description: SnSe crystallizes in the orthorhombic Pnma space group. The structure is two-dimensional and consists of two SnSe sheets oriented in the (0, 0, 1) direction. Sn2+ is bonded in a 5-coordinate geometry to three equivalent Se2- atoms. There are one shorter (2.78 Å) and two longer (2.84 Å) Sn–Se bond lengths. Se2- is bonded in a 3-coordinate geometry to three equivalent Sn2+ atoms.
DOI: 10.4121/uuid:61db65b1-b2aa-4ada-b41e-61ef70e57e4a
title: Soil Hydraulic and Thermal Properties for Land Surface Modelling over the Tibetan Plateau [version 1]

description: The in situ measurement of soil (hydraulic and thermal) property profiles were taken across the three climate zones (arid, semi-arid & semi-humid) over the Tibetan Plateau. In each climate zone, 1) the soil was sampled (c.a. 200 g) with a plastic bag used to measure gravel content, soil texture and soil organic content; 2) the soil was sampled with standard sample rings (5cm in height, 100 cm3 in volume) for the determination of bulk density, porosity and thermal conductivity; 3) for deriving the Soil Water Retention Curve (SWRC), a dedicated small sample ring (1 cm in height, 20 cm3 in volume) was used; 4) the in situ Ks was measured using the Aardvark permeameter, a fully automated constant-head borehole permeameter. Using these samples, the laboratory analyses were carried out with reference to standard methods. The quality of dataset was evaluated based on quality indicators from World Soil Information Institute and on cross check using values in the literature. This dataset was further used to evaluate the existing soil datasets over the Tibetan Plateau.
DOI: 10.5281/zenodo.1117859
title: Dataset: A Scalable Method To Improve Gray Matter Segmentation At Ultra High Field Mri.

description: <strong>Dataset description: </strong>Accompanying data for manuscript “A scalable method to improve gray matter segmentation at ultra high field MRI” written by Omer Faruk Gulban, Marian Schneider, Ingo Marquardt, Roy Haast, Federico De Martino, submitted for publication in PLOS One, January 2018.

Folder structure is organized according to Brain Imaging Data Structure (BIDS). Further details can be found the README files.
description: Acknowledgments:
This work was financed by the Netherlands Organisation for Scientific Research (NWO). The authors O.F.G. and F.D.M. as well as data acquisition for the MPRAGE data set were supported by NWO VIDI grant 864-13-012. Author M.S. was supported by NWO research talent grant 406-14-108. Author R.H. and acquisition of the MP2RAGE was funded by Technology Foundation STW (grant 12724).
DOI: 10.5281/zenodo.6244759
title: Effects of Reanalysis Forcing Fields on Ozone Trends from a Chemical Transport Model

description: This dataset is based on the global off-line 3-D chenmical transport model (TOMCAT/SLIMCAT) forced with ECMWF reanalyses (ERA-Interim and ERA5) to compare the performance of the stratospheric ozone simulations. Each field is separately saved as NETCDF file. Each field is show on geographic coordinates, which can be longitude, latitude, vertical hybrid-pressure level (for zonal mean fields, such as ozone, temperature and age-of-air). The dimensions in each field are: lat --&gt; latitude lon --&gt; longitude lev --&gt; hydrid pressure level time --&gt; months of the simulation The output of total column ozone from the TOMCAT/SLIMCAT simulations forced with ERA-Interim and ERA5 for Figures 1-5 are in files: Fig1_2_3_4_5_toz_A_ERAI.nc Fig1_2_3_4_5_toz_B_ERA5.nc The output of zonal mean ozone profiles from the TOMCAT/SLIMCAT simulations forced with ERA-Interim and ERA5 for Figures 7, 9 and the supplementary figures S1-3 are in files: Fig6_7_9_S1_2_3_O3_mm_A_ERAI.nc Fig6_7_9_S1_2_3_O3_mm_B_ERA5.nc The output of zonal mean temperature from the TOMCAT/SLIMCAT simulations forced with ERA-Interim and ERA5 for Figure 8 are in files: Fig8_te_mm_A_ERAI.nc Fig8_te_mm_B_ERA5.nc The output of zonal mean age-of-air from the TOMCAT/SLIMCAT simulations forced with ERA-Interim and ERA5 for Figures 10-12 are in files: Fig10_11_12_Age_mm_A_ERAI.nc Fig10_11_12_Age_mm_B_ERA5.nc The output of the zonal mean ozone, temperature and age-of-air from the ERA5.1 reanalysis corrected simulations during the period from 2000 to 2006 in all Figures above using ERA5 are in files: ERA5_1_O3_2000_18.nc ERA5_1_te_2000_18.nc ERA5_1_Age_2000_18.nc
DOI: 10.6073/pasta/180be476a353cf9969076e332dd1cdbd
title: Snowshoe Hare Mark-Recapture Trapping Data from western Montana Summer 1998-2018

description: These data were collected over 21 years from 1998-2018 with trapping primarily occurring from May-August. Snowshoe hares were trapped at 16 different girds spread across two regions (Tally Lake and Seeley Lake). Seeley Lake (Lat. = 47.2degree, Long. = -113.4degree) and Tally Lake (Lat. = 48.5degree, Long. = -114.8degree) are approximately 175 km apart and span similar elevations (approximately 1500-1900 m.a.s.l.). Both areas are managed by the US Forest Service (USFS) with a history of multiple use including timber production and are dominated by moist, coniferous forests of Douglas fir, western larch, subalpine fir, lodgepole pine, Engelmann spruce and Ponderosa pine with a herbaceous understory. Snowshoe hares were trapped during the summer using live-traps. We marked all hares greater than 500g with a unique numbered ear tag. We weighed all hares, determined sex, measured right hind foot (RHF) length and determined breeding status. Only adult hares (weight greater than 700g and RHF greater than 10cm) are included in this dataset.
DOI: 10.5683/sp/fvlzil
title: Central serous retinopathy retinal OCT images

description: Fovea-centered OCT images of adult retina diagnosed with central serous retinopathy
DOI: 10.17632/ndtxn2r2fg.1
title: Multiple sclerosis 2021

description: Expanded venous sinus data on multiple sclerosis
DOI: 10.5281/zenodo.6376594
title: Zellige example dataset: primary culture of human bronchial cells infected by SARS-CoV-2

description: A human bronchial epithelium was infected by SARS-CoV-2. The specimen was imaged four days post-infection. The z-stack image encompasses the very irregular epithelium surface. It was acquired with a point scanning microscope (Zeiss LSM700) equipped with Zeiss Plan-Apochromat 63x lens (NA=1.4). Pixel size 0.110µm, z step 0.4µm. This dataset contains both the ground-truth height map and the height map generated with Zellige. The Zellige parameters used are: \(T_{A}=23, T_{otsu}=16, S_{min}=5, \sigma_{xy}=4, \sigma_{z}=1, T_{OSE1}=0.9, R_{1}=5, C_{1}=0.9, T_{OSE2}=0.1, R_{2}=5, C_{2}=0.8.\). Nota: to compare the ground truth height map with the Zellige height map, one first needs to substrat 1 to all values of the Zellige height map. See the related paper:<br> https://hal-pasteur.archives-ouvertes.fr/pasteur-03319522 See the accompanying paper: Extracting multiple surfaces from 3D microscopy images in complex biological tissues with the Zellige software tool. Trébeau <em>et al.</em> 2022: https://doi.org/10.1101/2022.04.05.485876
DOI: 10.5683/sp/mbmqgd
title: Macular Hole Retinal OCT images

description: Fovea-centered OCT images of adult retina diagnosed with Macular Hole
DOI: 10.6084/m9.figshare.1023021
title: Gaussian Job Archive for C33H27CuI2N3P

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.1285/i24212113v4i2p55
title: "I believe in that movement and I believe in that chant": The influence of Black Lives Matter on resilience and empowerment

description: Over the past few years, systemic racism has been increasingly in the news via the work of the Black Lives Matter (BLM) movement. While the negative psychological effects of racial discrimination are well documented, less is known about how young people resist or change racism, and how social movements such as BLM may influence these individual processes. To address this gap, the current study used the Transconceptual Model of Empowerment and Resilience (TMER; Brodsky and Cattaneo, 2013) to explore how BLM operates to support, promote, and maintain resilience and empowerment processes among young Black men as they face racism. Semi-structured interviews with 14 young Black men were analyzed using an issue-focused analysis approach. The findings suggest that participants experienced a diverse range of racism. The BLM movement appeared to influence resilience and empowerment by: 1) providing awareness about racial injustice, 2) reinforcing racial pride, 3) offering resources, and 4) opening a window of opportunity for participants to enact change within their local context.
DOI: 10.5281/zenodo.6376584
title: Zellige example dataset: synthetic image dataset

description: <strong>Phantom 3D image containing three distinct and superimposed synthetic surfaces. </strong> It models a typical stack of confocal images of epithelial and non-epithelial structures.The surfaces generated are of two types: “solid” surfaces, presenting a homogeneous signal over the entire surface, or surfaces presenting a signal restricted to a polygonal mesh mimicking the mesh of apical cellular junctions of an epithelium observed at its surface. This dataset contains both the ground-truth height maps and the height maps generated with Zellige. The Zellige parameters used are: \(T_{A}=16, T_{otsu}=12, S_{min}=5, \sigma_{xy}=4, \sigma_{z}=2, T_{OSE1}=0.9, R_{1}=5, C_{1}=0.1, T_{OSE2}=0.1, R_{2}=10, C_{2}=0.8.\) Nota: the ground-truth height maps can be directly compared to Zellige height maps by subtraction. See the accompanying paper: Extracting multiple surfaces from 3D microscopy images in complex biological tissues with the Zellige software tool. Trébeau <em>et al.</em> 2022: https://doi.org/10.1101/2022.04.05.485876
DOI: 10.6073/pasta/4e17b7bf83b2ca4f48b7c90d0b164af2
title: Harvard Forest CTFS-ForestGEO Mapped Forest Plot since 2014

description: To investigate the forest dynamics across a larger range of scales in which many processes operate, Harvard Forest (HF) researchers, with assistance from the Center for Tropical Forest Science (CTFS) and the Smithsonian Institute’s Forest Global Earth Observatory (ForestGEO), completed an initial census of all woody stems within a 35 ha plot located at the Harvard Forest in 2014. The HF MegaPlot is part of a global array of large-scale plots established by CTFS whose goals are to increase sampling efforts into temperate forests to explore ecosystem processes beyond population dynamics and biodiversity. The geography and size of the HF MegaPlot (500 m x 700 m) is designed to include a continuous, expansive, and varied natural forest landscape. The strategic plot location will yield opportunities for the study of forest dynamics and demography while capturing a large amount of existing NSF funded LTER (Long Term Ecological Research) science infrastructure (e.g. eddy flux towers, gauged sections of a small watershed, existing smaller permanent plots) and a century of observations and studies. The HF MegaPlot will enable an integrated study of ecosystem processes (e.g., biogeochemistry, hydrology, carbon dynamics) and forest dynamics by melding the past with current and future forest research. The second census was conducted during the summers of 2018 and 2019 but did not contain the central swamp portion of the plot.
DOI: 10.5281/zenodo.6965796
title: Datasets for investigation of the impact of afforestation on the atmospheric water cycle over the Loess Plateau

description: These datasets are the processed and refined data that support and lead to the described results and allow other readers to assess the conclusions in the paper, entitled “Large-scale Afforestation Enhances Precipitation by Intensifying the Atmospheric Water Cycle over the Chinese Loess Plateau”.
description: {"references": ["Dominguez, F., Kumar, P., Liang, X.-Z., & Ting, M. (2006). Impact of atmospheric moisture storage on precipitation recycling. Journal of Climate, 19(8), 1513-1530. https://doi.org/10.1175/JCLI3691.1"]}
DOI: 10.5281/zenodo.4696224
title: Simulations of cosmogenic isotopes production via CCM SOCOL-AERv2-BE

description: Simulations of cosmogenic isotopes production via CCM SOCOL-AERv2-BE. Production for 10Be, 7Be, 36Cl and 14C.
DOI: 10.1285/i26113775n3
title: Despoblación y transformaciones sociodemográficas de los territorios rurales: los casos de España, Italia y Francia

description: Este tercer volumen de la colección Perspectives in Rural Development ha reunido a 26 investigadores pertenecientes a 14 universidades y centros de investigación europeos de España, Italia y Francia, pertenecientes a ramas del conocimiento dispares y diferentes perspectivas teóricas y metodológicas, que, en sus propios idiomas -vehículo vernáculo primigenio de expresión y transmisión de sentimientos y pensares- abordan, desde realidades, similares a veces y distintas en otras ocasiones, el preocupante fenómeno de la despoblación, y de sus cambios sociodemográficos, que asola a gran parte de los territorios rurales europeos. Esta mezcolanza de situaciones territoriales, de perfiles investigadores, de temáticas abordadas, de lenguas empleadas permiten al lector que se acerca a él adentrarse en la diversidad como conformadora de uno de sus elementos básicos cuando analizamos su situación y sus perspectivas de desarrollo. Envejecimiento, abandono, masculinización, lejanía, etc., son términos que se repiten en el trascurrir de sus páginas; pero también, emergen con nitidez otros que nos evocan nuevas perspectivas, nuevos oportunidades para estos espacios: neo-rural, innovación rural, mujer y juventud, patrimonio cultural y natural, nuevo paradigma de la ruralidad, economía circular, agroecología, lugares vividos y sentidos, nuevas relaciones campo-ciudad, nuevas relaciones bio-sociales, etc.; leámoslas como presagio de un esperanzador futuro rural.
DOI: 10.15482/usda.adc/1522610
title: Semiarid grasslands and extreme precipitation events: Do experimental results scale to the landscape?
DOI: 10.17632/c49p4g34cc.2
title: Data on sintering, Nd:YAG welding and vickers hardness value of 2507 duplex stainless steel (DSS))

description: The data was obtained from the Spark Plasma Sintering (SPS) process, Nd:YAG laser welding and Vickers hardness test on 2507 DSS
DOI: 10.5066/f7mp51ds
title: Data Release for: Empirical Models for Estimating Baseline Streamflows in California and their Likelihood of Anthropogenic Modification

description: The dataset contain estimates of natural monthly streamflow for 135,118 stream segments in California, USA, from 1950 to 2012. Segments are identified per the medium resolution National Hydrography Dataset (NHD), Version 1. The dataset also contains observed monthly streamflows and estimates of natural monthly streamflows for 894 USGS stream gages in California, USA.
DOI: 10.5281/zenodo.5534306
title: Introducing new metrics for the atmospheric pressure adjustment to thermal structures in the ocean - instantaneous numerical outputs

description: The data set contains the netcdf files with the instantaneous fields produced by the WRF V3.6.1 numerical model at 2014-10-06_01:00:00 over the Ligurian Sea analyzed in Meroni, A. N., F. Desbiolles and C. Pasquero "Introducing new metrics for the atmospheric pressure adjustment to thermal structures in the ocean".
DOI: 10.5281/zenodo.5704509
title: Kapp Linne Lindroth

description: 1. Half-hourly fluxes of CO2 using eddy covariance on a moist moss tundra on Kapp Linne, Svalbard during growing season 2015 2. Fluxes of CO2 and CH4 measured during growing season 2005 and 2016 with a chamber system connected with a Los Gatos Ultraportable Gas Analyzer. 3. Publication submitted to Biogeosciences November 2021: Moist moss tundra on Kapp Linne, Svalbard is a net source of CO<sub>2</sub> and CH<sub>4</sub> to the atmosphere A. Lindroth<sup>1</sup>, N. Pirk<sup>2</sup>, I. S. Jónsdóttir<sup>3</sup>, C. Stiegler<sup>4</sup>, L. Klementsson<sup>5</sup>, and M. B. Nilsson<sup>6</sup> <sup>1</sup>Department of Physical Geography and Ecosystem Science, Lund University, Lund, Sweden. <sup>2</sup>Department of Geosciences, University of Oslo, Oslo, Norway. <sup>3</sup>Life and Environmental Sciences, University of Iceland, Reykjavik, Iceland. <sup>4</sup>Bioclimatology, Georg-August Universität Göttingen, Göttingen, Germany. <sup>5</sup>Department of Earth Sciences, University of Gothenburg, Gothenburg, Sweden. <sup>6</sup>Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden. Corresponding author: anders.lindroth@nateko.lu.se
description: No specific funding was obtained for this work. Authors were supported by their respective organisations.
DOI: 10.5281/zenodo.6941308
title: Demographic data along with questionnaires responses

description: Demographic data along with questionnaires responses
DOI: 10.11588/data/et9g9x
title: A novel role for the cholinergic basal forebrain nucleus of Meynert in chronic pain via modulation of the prelimbic cortex

description: This dataset contains all raw electrophysiology data and associated analysis procedures reported in Oswald et al. Cholinergic basal forebrain nucleus of Meynert regulates chronic pain-like behaviour via modulation of the prelimbic cortex. Nat Comm (2022). Abstract: The basal nucleus of Meynert (NBM) subserves critically important functions in attention, arousal and cognition via its profound modulation of neocortical activity and is emerging as a key target in Alzheimer’s and Parkinson’s dementias. Despite the crucial role of neocortical domains in pain perception, however, the NBM has not been studied in models of chronic pain. Here, using in vivo tetrode recordings in behaving mice, we report that beta and gamma oscillatory activity is evoked in the NBM by noxious stimuli and is facilitated at peak inflammatory pain-like behaviour. Optogenetic and chemogenetic cell-specific, reversible manipulations of NBM cholinergic-GABAergic neurons reveal their role in endogenous control of nociceptive hypersensitivity, which are manifest via projections to the prelimbic cortex, resulting in layer 5-mediated antinociception. Our data unravel the importance of the NBM in top-down control of neocortical processing of pain-like behaviour.