cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15151/esrf-es-514139895
title: Structural analysis of the SUMO conjugation pathway

description: Post-translational protein modification by ubiquitin or ubiquitin-like modifiers (Ub/Ubl) regulates a whole variety of cellular processes (protein degradation, signaling, sorting, localization, activation and repression). In our project we aim to study different mechanisms of regulation of the Ub/Ubl pathway at different stages of the pathway: interaction E1-E2 enzymes; the regulation of the SUMO E3 ligase activity of Nse2, which is a subunit of the Smc5-Smc6 complex; and the regulatory mechanism of the de-ubiquitinase activity of USPL1. Smc5-Smc6 complex is involved in a variety of DNA repair pathways and participates in DNA double-stranded break repair. Disruption of SUMO conjugation by Smc5-Smc6-Nse2 produces serious problems in models of DNA damage.
DOI: 10.15151/esrf-es-514134620
title: Macromolecular Crystallography in Bordeaux/Lyon/Toulouse IECB IBGC CBMN / IBCP-MMSB ICBMS / IPBS

description: The different research teams who are part of this BAG are located in Bordeaux, Lyon and Toulouse. They are mainly working on worldwide health concerns or biotechnological relevant projects. In more details, infectiology, molecular assemblies, biosynthetic pathways or glycobiology are their main research axises. Important results have been obtained so far regarding the development of new therapeutic strategies against several infectious diseases or regarding plastic bioremediation. In order to go further into details of all these studies, access to ESRF facilities is a requirement.
DOI: 10.15151/esrf-es-514139538
title: Molecular machines in energy transduction, cellular signaling and defense processes

description: Within this BAG we are focussing mainly on three topics: 1.) proteins that use the energy of light, ATP, GTP or NADH to perform essential biological functions, either embedded in the membrane or in the cytosol 2.) proteins of different essential signaling or metabolic processes in plants like the ethylene pathway or the nitrogen metabolism 3.) proteins involved in the immune system of prokaryotic bacteria and plants or associated with diseases like cancer or developmental disorders
DOI: 10.15151/esrf-es-514133230
title: Structural Biology in Marseille

description: The BAG groups 8 teams from 4 Marseille laboratories. Research themes deal with infection, health and biotechnology. For 81 projects within this proposal we foresee 11 MX and 2 SAXS shifts for the next 6 months. This is less of what we had asked for in previous years, given that data collection speed has largely increased and several projects are now being tackled by Cryo-EM. To be added that during the ESRF shutdown all the activities of the BAG have moved to Soleil and the moving back of activities to ESRF is affected by natural inertia. 2 shifts for 6 month at the BIOSAXS beamline, split up in two sessions, suit our needs. Two teams of the BAG combine structural biology with medicinal chemistry and beam time at MASSIF for large ligand-screening campaigns will mostly suit their research purposes. We are grateful to all ESRF staff for always being forthcoming with regard to scheduling, logistics and experiments, allowing the BAG to produce good Science in a comfortable setting.
DOI: 10.15151/esrf-es-514138740
title: High-pressure-high-temperature phase diagram of CaCO3

description: Calcium carbonate (CaCO3) and its phase transitions have been extensively studied mainly due to its geological importance. The current proposal is aimed to explore the CaCO3 phase diagram at pressures above 10 GPa and 1400 °C by means of angle-dispersive in situ x-ray diffraction in multianvil press. We propose identifying and characterizing the latest observed unknown phases of CaCO3 (Litasov et al. 2020). Preliminary in-situ x-ray diffraction experiments at HP-HT indicated a potential aragonite’s amorphisation, that needed to be confirmed. We believe that a proper understanding of the CaCO3 phase diagram is fundamental for Earth sciences and, in particular, for the global C cycle.
DOI: 10.5281/zenodo.5545098
title: Roach et al. (2019) coupled wave-ice model output (hourly coupling version): Beaufort Sea 2012-2019

description: Wavewatch III model output from Roach et al. (2019) coupled wave-ice model with hourly coupling from the central Beaufort Sea, spanning 2012-2019. See manuscript below for further details: Roach, L., C. Bitz, C. Horvat, and S. Dean (2019), Advances in modelling interactions between sea ice and ocean surface waves. Journal of Advances in Modeling Earth Systems
DOI: 10.5281/zenodo.5545097
title: Roach et al. (2019) coupled wave-ice model output (hourly coupling version): Beaufort Sea 2012-2019

description: Wavewatch III model output from Roach et al. (2019) coupled wave-ice model with hourly coupling from the central Beaufort Sea, spanning 2012-2019. See manuscript below for further details: Roach, L., C. Bitz, C. Horvat, and S. Dean (2019), Advances in modelling interactions between sea ice and ocean surface waves. Journal of Advances in Modeling Earth Systems
DOI: 10.5519/qd.c6g0rah4
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (14 records)
DOI: 10.5517/ccdc.csd.cc22b2p6
title: CCDC 1916317: Experimental Crystal Structure Determination

description: Related Article: Max Born, Konstantin Karaghiosoff, Thomas M. Klapötke|2021|J.Org.Chem.|86|12607|doi:10.1021/acs.joc.1c01060
DOI: 10.5517/ccdc.csd.cc22b2q7
title: CCDC 1916318: Experimental Crystal Structure Determination

description: Related Article: Max Born, Konstantin Karaghiosoff, Thomas M. Klapötke|2021|J.Org.Chem.|86|12607|doi:10.1021/acs.joc.1c01060
DOI: 10.5517/ccdc.csd.cc25jjr0
title: CCDC 2011892: Experimental Crystal Structure Determination

description: Related Article: Zhou-Hao Zhu, Yi-Xuan Ding, Bo Wu, Yong-Gui Zhou|2021|Org.Lett.|23|7166|doi:10.1021/acs.orglett.1c02568
DOI: 10.5517/ccdc.csd.cc26cb0y
title: CCDC 2036669: Experimental Crystal Structure Determination

description: Related Article: Zhu dyzhu|2020|CSD Communication|||
description: Related Article: Daoyong Zhu, Wenqiang Xu, Maoping Pu, Yun-Dong Wu, Yonggui Robin Chi, Jianrong Steve Zhou|2021|Org.Lett.|23|7064|doi:10.1021/acs.orglett.1c02457
DOI: 10.5517/ccdc.csd.cc27b3mb
title: CCDC 2065301: Experimental Crystal Structure Determination

description: Related Article: Daoyong Zhu, Wenqiang Xu, Maoping Pu, Yun-Dong Wu, Yonggui Robin Chi, Jianrong Steve Zhou|2021|Org.Lett.|23|7064|doi:10.1021/acs.orglett.1c02457
DOI: 10.5517/ccdc.csd.cc27frq5
title: CCDC 2068807: Experimental Crystal Structure Determination

description: Related Article: Paulina H. Marek-Urban, Mateusz Urban, Magdalena Wiklińska, Klaudia Paplińska, Krzysztof Woźniak, Agata Blacha-Grzechnik, Krzysztof Durka|2021|J.Org.Chem.|86|12714|doi:10.1021/acs.joc.1c01254
DOI: 10.5517/ccdc.csd.cc27frr6
title: CCDC 2068808: Experimental Crystal Structure Determination

description: Related Article: Paulina H. Marek-Urban, Mateusz Urban, Magdalena Wiklińska, Klaudia Paplińska, Krzysztof Woźniak, Agata Blacha-Grzechnik, Krzysztof Durka|2021|J.Org.Chem.|86|12714|doi:10.1021/acs.joc.1c01254
DOI: 10.5517/ccdc.csd.cc27frs7
title: CCDC 2068809: Experimental Crystal Structure Determination

description: Related Article: Paulina H. Marek-Urban, Mateusz Urban, Magdalena Wiklińska, Klaudia Paplińska, Krzysztof Woźniak, Agata Blacha-Grzechnik, Krzysztof Durka|2021|J.Org.Chem.|86|12714|doi:10.1021/acs.joc.1c01254
DOI: 10.5517/ccdc.csd.cc27frt8
title: CCDC 2068810: Experimental Crystal Structure Determination

description: Related Article: Paulina H. Marek-Urban, Mateusz Urban, Magdalena Wiklińska, Klaudia Paplińska, Krzysztof Woźniak, Agata Blacha-Grzechnik, Krzysztof Durka|2021|J.Org.Chem.|86|12714|doi:10.1021/acs.joc.1c01254
DOI: 10.5517/ccdc.csd.cc27jsm6
title: CCDC 2071718: Experimental Crystal Structure Determination

description: Related Article: Yangqing Zheng, Weichao Jiang, Jingbo Tan, Juzhang Yan, Ruoting Zhan, Huicai Huang|2021|J.Org.Chem.|86|12821|doi:10.1021/acs.joc.1c01449
DOI: 10.5517/ccdc.csd.cc27q2dg
title: CCDC 2076795: Experimental Crystal Structure Determination

description: Related Article: Swarup Ghosh, Kevin Huse, Christoph Wölper, Alexander Tjaberings, André H. Gröschel, Stephan Schulz|2021|Z.Anorg.Allg.Chem.|647|1744|doi:10.1002/zaac.202100133
DOI: 10.5517/ccdc.csd.cc27q2fh
title: CCDC 2076796: Experimental Crystal Structure Determination

description: Related Article: Swarup Ghosh, Kevin Huse, Christoph Wölper, Alexander Tjaberings, André H. Gröschel, Stephan Schulz|2021|Z.Anorg.Allg.Chem.|647|1744|doi:10.1002/zaac.202100133
DOI: 10.5517/ccdc.csd.cc27q2gj
title: CCDC 2076797: Experimental Crystal Structure Determination

description: Related Article: Swarup Ghosh, Kevin Huse, Christoph Wölper, Alexander Tjaberings, André H. Gröschel, Stephan Schulz|2021|Z.Anorg.Allg.Chem.|647|1744|doi:10.1002/zaac.202100133
DOI: 10.5517/ccdc.csd.cc27y1s1
title: CCDC 2083503: Experimental Crystal Structure Determination

description: Related Article: Bingxian Liu, Lingyun Yang, Zhenzhen Dong, Junbiao Chang, Xingwei Li|2021|Org.Lett.|23|7199|doi:10.1021/acs.orglett.1c02597
DOI: 10.5517/ccdc.csd.cc27y1t2
title: CCDC 2083504: Experimental Crystal Structure Determination

description: Related Article: Bingxian Liu, Lingyun Yang, Zhenzhen Dong, Junbiao Chang, Xingwei Li|2021|Org.Lett.|23|7199|doi:10.1021/acs.orglett.1c02597
DOI: 10.5517/ccdc.csd.cc27y1v3
title: CCDC 2083505: Experimental Crystal Structure Determination

description: Related Article: Bingxian Liu, Lingyun Yang, Zhenzhen Dong, Junbiao Chang, Xingwei Li|2021|Org.Lett.|23|7199|doi:10.1021/acs.orglett.1c02597
DOI: 10.5517/ccdc.csd.cc28574v
title: CCDC 2090396: Experimental Crystal Structure Determination

description: Related Article: Nikolai A. Sitte, Maximilian Menche, Pavel Tužina, Frank Bienewald, Ansgar Schäfer, Peter Comba, Frank Rominger, A. Stephen K. Hashmi, Thomas Schaub|2021|J.Org.Chem.|86|13041|doi:10.1021/acs.joc.1c01807
DOI: 10.5517/ccdc.csd.cc285mhl
title: CCDC 2090779: Experimental Crystal Structure Determination

description: Related Article: Bingxian Liu, Lingyun Yang, Zhenzhen Dong, Junbiao Chang, Xingwei Li|2021|Org.Lett.|23|7199|doi:10.1021/acs.orglett.1c02597
DOI: 10.5517/ccdc.csd.cc285mjm
title: CCDC 2090780: Experimental Crystal Structure Determination

description: Related Article: Bingxian Liu, Lingyun Yang, Zhenzhen Dong, Junbiao Chang, Xingwei Li|2021|Org.Lett.|23|7199|doi:10.1021/acs.orglett.1c02597
DOI: 10.5517/ccdc.csd.cc285mkn
title: CCDC 2090781: Experimental Crystal Structure Determination

description: Related Article: Bingxian Liu, Lingyun Yang, Zhenzhen Dong, Junbiao Chang, Xingwei Li|2021|Org.Lett.|23|7199|doi:10.1021/acs.orglett.1c02597
DOI: 10.5281/zenodo.5544043
title: Aeroelastic simulations of wind turbines affected by leading edge erosion: datasets for multivariate time-series classification

description: This repository contains data generated and used for classification in the publication:<br> - Duthé, Gregory, Imad Abdallah, Sarah Barber, and Eleni Chatzi. 2021. “Modelling and Monitoring Erosion of the Leading Edge of Wind Turbine Blades.” engrXiv. September 1. doi:10.31224/osf.io/mcg75. (https://engrxiv.org/mcg75) The data is generated via OpenFAST aeroelastic simulations coupled with a Non-Homogeneous Compound Poisson Process for degradation modelling and was used to train a Transformer deep learning model. Each sample is a multivariate time-series of length 60'000, with the following 4 channels extracted from the simulations for a section at the tip of the blade: Inflow velocity Angle of attack Lift coefficient Drag coefficient .Please see the publication above for more information as well as the included readme for information about the data and an example of how to load it into to PyTorch.
description: {"references": ["Duth\u00e9, Gregory, Imad Abdallah, Sarah Barber, and Eleni Chatzi. 2021. \"Modelling and Monitoring Erosion of the Leading Edge of Wind Turbine Blades.\" engrXiv. September 1. doi:10.31224/osf.io/mcg75."]}
DOI: 10.6084/m9.figshare.16571558
title: Unmanned Aircraft Users in New Zealand

description: This dataset contains participant responses to an online survey (hosted via Qualtrics) of unmanned aircraft users based in New Zealand, which ran from 14th October 2020 until 13th January 2021. It collected 946 responses, however, only 919 are complete enough to be considered as valid responses. These 919 responses are shown in the "Raw Data" sheet, while the 27 that were not complete enough are shown in the "Excluded participants" sheet. The questions are shown in the top row, noting that sometimes exclusion criteria were applied to who got asked which questions. For this reason, the full list of questions with exclusion criteria are shown in the accompanying word document.<br>Participants had to meet the following three recruitment criteria:1. Reside in New Zealand2. Have flown an unmanned aircraft before3. Be 16 years or older<br>This project was peer-reviewed and deemed to be low risk. It was thus registered as such on the Massey University Human Ethics Database.
DOI: 10.5517/ccdc.csd.cc288mw2
title: CCDC 2093674: Experimental Crystal Structure Determination

description: Related Article: Su-Jin Lim, Aizhan Abdildinova, Young-Dae Gong|2021|J.Org.Chem.|86|12517|doi:10.1021/acs.joc.1c00791
DOI: 10.5517/ccdc.csd.cc281gld
title: CCDC 2086783: Experimental Crystal Structure Determination

description: Related Article: Bilge Banu Yagci, Yunus Zorlu, Yunus Emre Türkmen|2021|J.Org.Chem.|86|13118|doi:10.1021/acs.joc.1c01534
DOI: 10.5517/ccdc.csd.cc281gmf
title: CCDC 2086784: Experimental Crystal Structure Determination

description: Related Article: Bilge Banu Yagci, Yunus Zorlu, Yunus Emre Türkmen|2021|J.Org.Chem.|86|13118|doi:10.1021/acs.joc.1c01534
DOI: 10.5517/ccdc.csd.cc28hffn
title: CCDC 2100201: Experimental Crystal Structure Determination

description: Related Article: Maksym V. Stambirskyi, Tetiana Kostiuk, Serhii I. Sirobaba, Alexander Rudnichenko, Dmytro L. Titikaiev, Yurii V. Dmytriv, Halyna Kuznietsova, Iryna Pishel, Petro Borysko, Pavel K. Mykhailiuk|2021|J.Org.Chem.|86|12783|doi:10.1021/acs.joc.1c01413
DOI: 10.5517/ccdc.csd.cc28hfgp
title: CCDC 2100202: Experimental Crystal Structure Determination

description: Related Article: Maksym V. Stambirskyi, Tetiana Kostiuk, Serhii I. Sirobaba, Alexander Rudnichenko, Dmytro L. Titikaiev, Yurii V. Dmytriv, Halyna Kuznietsova, Iryna Pishel, Petro Borysko, Pavel K. Mykhailiuk|2021|J.Org.Chem.|86|12783|doi:10.1021/acs.joc.1c01413
DOI: 10.5517/ccdc.csd.cc28hfhq
title: CCDC 2100203: Experimental Crystal Structure Determination

description: Related Article: Maksym V. Stambirskyi, Tetiana Kostiuk, Serhii I. Sirobaba, Alexander Rudnichenko, Dmytro L. Titikaiev, Yurii V. Dmytriv, Halyna Kuznietsova, Iryna Pishel, Petro Borysko, Pavel K. Mykhailiuk|2021|J.Org.Chem.|86|12783|doi:10.1021/acs.joc.1c01413
DOI: 10.5517/ccdc.csd.cc281gng
title: CCDC 2086785: Experimental Crystal Structure Determination

description: Related Article: Bilge Banu Yagci, Yunus Zorlu, Yunus Emre Türkmen|2021|J.Org.Chem.|86|13118|doi:10.1021/acs.joc.1c01534
DOI: 10.6084/m9.figshare.16726042
title: SPSS Data

description: The survey was conducted by Google Forms through social media channels (WhatsApp, Twitter, Facebook, etc.) between October 01 and November 01, 2020, when the 2nd COVID-19 wave began. Five hundred thirteen individuals older than age 18 and from Turkey participated in the research. The respondents were directed to research's website through a link, and they participated in the online questionnaire voluntarily and anonymously.
DOI: 10.5281/zenodo.5545701
title: Vanishing_Glaciers_Epilithic_Biofilms

description: - Dataset containing the separate output files from IMP, METABOLIC, gRodon, Anvi'o, MANTIS etc. for downstream analyses of epilithic biofilms from the NOMIS Vanishing Glacier's project
DOI: 10.5281/zenodo.5543461
title: Vanishing_Glaciers_Epilithic_Biofilms

description: - Dataset containing the separate output files from IMP, METABOLIC, gRodon, Anvi'o, MANTIS etc. for downstream analyses of epilithic biofilms from the NOMIS Vanishing Glacier's project
DOI: 10.6084/m9.figshare.16528209
title: Data and R code for "Roosting ecology of endangered plant-roosting bats on Okinawa Island: implications for bat-friendly forestry practices"

description: Data and R code for the manuscript "Roosting ecology of endangered plant-roosting bats on Okinawa Island: implications for bat-friendly forestry practices" by Jason H. Preble, Christian E. Vincenot, Kazuhiko Saito, and Nobuhito Ohte published in <i>Ecology & Evolution</i>.<br><b>Abstract from manuscript</b><b></b>Roosting information is crucial to guiding bat conservation and bat-friendly forestry practices. The Ryukyu tube-nosed bat <i>Murina ryukyuana </i>(Endangered) and Yanbaru whiskered bat <i>Myotis yanbarensis </i>(Critically Endangered) are forest-dwelling bats endemic to the central Ryukyu Archipelago, Japan. Despite their threatened status, little is known about the roosting ecology of these species and the characteristics of natural maternity roosts are unknown. To inform sustainable forestry practices and conservation management, we radio-tracked day roosts of both species in the subtropical forests of Okinawa’s Kunigami Village district. We compared roost and roost site characteristics statistically between <i>M. ryukyuana </i>non-maternity roosts (males or non-reproductive females), maternity roosts, and all <i>M. yanbarensis </i>roosts. Generalized linear models were used to investigate roost site selection by <i>M. ryukyuana </i>irrespective of sex and age class. Lastly, we compiled data on phenology from this and prior studies. Non-reproductive <i>M. ryukyuana </i>roosted alone and primarily in understory foliage. <i>Murina ryukyuana </i>maternity roosts were limited to stands &gt;50 years old and ~60% were in foliage. <i>Myotis yanbarensis </i>roosted almost entirely in cavities along gulch bottoms and only in stands &gt;70 years old (~1/3 of Kunigami’s total forest area). <i>Murina ryukyuana </i>maternity roosts were higher (4.3 ± 0.6 m) than conspecific non-maternity roosts (2.3 ± 0.5 m; <i>P </i>&lt; 0.001) and <i>M. yanbarensis </i>roosts (2.7 ± 0.5 m; not significant). Model results were inconclusive. Both species appear to be obligate plant roosters throughout their life cycle, but the less flexible roosting preferences of <i>M. yanbarensis</i> may explain its striking rarity. To conserve these threatened bats, we recommend the following forestry practices: 1) reduce clearing of understory vegetation, 2) refrain from removing trees along streams, 3) promote greater tree cavity densities by protecting old-growth forests and retaining snags, and 4) refrain from removing trees or understory between April–July, while bats are pupping.<br><b>Ethical statement</b><b></b>This research was carried out under permits from Aha Dam Office, Kunigami Village Office, University of the Ryukyus Experimental Forest Yona Field, Okinawa Regional Forest Office, Okinawa Prefectural Government Hokubu Agriculture, Forestry and Fisheries Promotion Center, and the Japanese Ministry of the Environment. Animal research was also permitted by Kyoto University (permits Inf-K17008 and Inf-K19007).
DOI: 10.6084/m9.figshare.16528209.v2
title: Data and R code for "Roosting ecology of endangered plant-roosting bats on Okinawa Island: implications for bat-friendly forestry practices"

description: Data and R code for the manuscript "Roosting ecology of endangered plant-roosting bats on Okinawa Island: implications for bat-friendly forestry practices" by Jason H. Preble, Christian E. Vincenot, Kazuhiko Saito, and Nobuhito Ohte published in <i>Ecology & Evolution</i>.<br><b>Abstract from manuscript</b><b></b>Roosting information is crucial to guiding bat conservation and bat-friendly forestry practices. The Ryukyu tube-nosed bat <i>Murina ryukyuana </i>(Endangered) and Yanbaru whiskered bat <i>Myotis yanbarensis </i>(Critically Endangered) are forest-dwelling bats endemic to the central Ryukyu Archipelago, Japan. Despite their threatened status, little is known about the roosting ecology of these species and the characteristics of natural maternity roosts are unknown. To inform sustainable forestry practices and conservation management, we radio-tracked day roosts of both species in the subtropical forests of Okinawa’s Kunigami Village district. We compared roost and roost site characteristics statistically between <i>M. ryukyuana </i>non-maternity roosts (males or non-reproductive females), maternity roosts, and all <i>M. yanbarensis </i>roosts. Generalized linear models were used to investigate roost site selection by <i>M. ryukyuana </i>irrespective of sex and age class. Lastly, we compiled data on phenology from this and prior studies. Non-reproductive <i>M. ryukyuana </i>roosted alone and primarily in understory foliage. <i>Murina ryukyuana </i>maternity roosts were limited to stands &gt;50 years old and ~60% were in foliage. <i>Myotis yanbarensis </i>roosted almost entirely in cavities along gulch bottoms and only in stands &gt;70 years old (~1/3 of Kunigami’s total forest area). <i>Murina ryukyuana </i>maternity roosts were higher (4.3 ± 0.6 m) than conspecific non-maternity roosts (2.3 ± 0.5 m; <i>P </i>&lt; 0.001) and <i>M. yanbarensis </i>roosts (2.7 ± 0.5 m; not significant). Model results were inconclusive. Both species appear to be obligate plant roosters throughout their life cycle, but the less flexible roosting preferences of <i>M. yanbarensis</i> may explain its striking rarity. To conserve these threatened bats, we recommend the following forestry practices: 1) reduce clearing of understory vegetation, 2) refrain from removing trees along streams, 3) promote greater tree cavity densities by protecting old-growth forests and retaining snags, and 4) refrain from removing trees or understory between April–July, while bats are pupping.<br><b>Ethical statement</b><b></b>This research was carried out under permits from Aha Dam Office, Kunigami Village Office, University of the Ryukyus Experimental Forest Yona Field, Okinawa Regional Forest Office, Okinawa Prefectural Government Hokubu Agriculture, Forestry and Fisheries Promotion Center, and the Japanese Ministry of the Environment. Animal research was also permitted by Kyoto University (permits Inf-K17008 and Inf-K19007).