cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6147200
title: Additional file 3: of Effectiveness of government strategies for financial protection against costs of hospitalization Care in India

description: Average Out-of-pocket expenditure (OOPE) per hospitalization episode (the mean, in Rs.) across various socio-economic categories by type of insurance coverage. This table was calculated by the authors using the NSS 71st Round unit level data. This table shows OOPE across different equity indicators (sex, residence and social group). (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.6147200.v1
title: Additional file 3: of Effectiveness of government strategies for financial protection against costs of hospitalization Care in India

description: Average Out-of-pocket expenditure (OOPE) per hospitalization episode (the mean, in Rs.) across various socio-economic categories by type of insurance coverage. This table was calculated by the authors using the NSS 71st Round unit level data. This table shows OOPE across different equity indicators (sex, residence and social group). (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.6147176
title: Additional file 2: of Effectiveness of government strategies for financial protection against costs of hospitalization Care in India

description: Choice of Provider for hospitalization under different insurance schemes (as a percentage of all hospitalization episodes). This table was calculated by the authors using the NSS 71st Round unit level data. This table shows the extent of service provisioning under public and private facilities. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.6147176.v1
title: Additional file 2: of Effectiveness of government strategies for financial protection against costs of hospitalization Care in India

description: Choice of Provider for hospitalization under different insurance schemes (as a percentage of all hospitalization episodes). This table was calculated by the authors using the NSS 71st Round unit level data. This table shows the extent of service provisioning under public and private facilities. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.6147173
title: MOESM1 of The impact of genome editing on the introduction of monogenic traits in livestock

description: Additional file 1. Simulation_genome_editing.R. This file presents the simulation program in R to create the simulation scenarios presented.
DOI: 10.6084/m9.figshare.6147173.v1
title: MOESM1 of The impact of genome editing on the introduction of monogenic traits in livestock

description: Additional file 1. Simulation_genome_editing.R. This file presents the simulation program in R to create the simulation scenarios presented.
DOI: 10.6084/m9.figshare.6147158
title: Additional file 1: of Effectiveness of government strategies for financial protection against costs of hospitalization Care in India

description: Different public funded health insurance (PFHI) programmes in India. This table shows the different PFHIs in India, including eligible beneficiaries, packages of services, sources of funding and covered population. This was obtained from different statesâ websites and the World Bank Report, 2012. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.6147158.v1
title: Additional file 1: of Effectiveness of government strategies for financial protection against costs of hospitalization Care in India

description: Different public funded health insurance (PFHI) programmes in India. This table shows the different PFHIs in India, including eligible beneficiaries, packages of services, sources of funding and covered population. This was obtained from different statesâ websites and the World Bank Report, 2012. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.6146777
title: Melophagus metatranscriptome

description: Supplementary files:<br>Supplementary_file_1_AM_expression.xls<br>Supplementary_file_2_MO_expression.xlsSupplementary_file_3_immunity.pdf<br>Supplementary_file_4_data_and_mapping_statistics.doc<br>Additional files:(1) Trinity.fasta & Trinity.fasta.transdecoder.pepMeta-transcriptome assembly for M. ovinus, including predicted proteins.<br>(2) Trinity_expressed_decontaminated.fasta & Trinity_expressed_decontaminated.fasta.transdecoder.pepFiltered reference transcriptome assembly (including proteome) for M. ovinus. Bacterial, kinetoplastid, and chordate transcripts were removed and only transcripts with digital expression &gt; 1 were retained.<br>(3) trinotate_annotation_report.xlsAnnotation report for all the transcripts.<br>(4) TrinotateWeb.sqliteTrinotateWeb.sqlite database with complete data for M. ovinus analyses.<br>(5) Supplementary figures with quality check analyses for individual samples/replicates and non-interactive differential expression visualization (Volcano and MA plots).<br>(6) AME_300418.gbkArsenophonus melophagi genbank file with updated pseudogene calls.<br>(7) AME_pathways.pdfCellular overview of A. melophagi with enzymatic steps filled by heatmap colors according to their FPKM expression (log scale).
DOI: 10.6084/m9.figshare.6146777.v1
title: Melophagus metatranscriptome

description: Supplementary files:<br>Supplementary_file_1_AM_expression.xls<br>Supplementary_file_2_MO_expression.xls<br>Additional files:(1) Trinity.fasta & Trinity.fasta.transdecoder.pepMeta-transcriptome assembly for M. ovinus, including predicted proteins.<br>(2) Trinity_expressed_decontaminated.fasta & Trinity_expressed_decontaminated.fasta.transdecoder.pepFiltered reference transcriptome assembly (including proteome) for M. ovinus. Bacterial, kinetoplastid, and chordate transcripts were removed and only transcripts with digital expression &gt; 1 were retained.<br>(3) trinotate_annotation_report.xlsAnnotation report for all the transcripts.<br>(4) TrinotateWeb.sqliteTrinotateWeb.sqlite database with complete data for M. ovinus analyses.<br>(5) Supplementary figures with quality check analyses for individual samples/replicates and non-interactive differential expression visualization (Volcano and MA plots).<br>(6) AME_300418.gbkArsenophonus melophagi genbank file with updated pseudogene calls.<br>(7) AME_pathways.pdfCellular overview of A. melophagi with enzymatic steps filled by heatmap colors according to their FPKM expression (log scale).
DOI: 10.6084/m9.figshare.6146777.v2
title: Melophagus metatranscriptome

description: Supplementary files:<br>Supplementary_file_1_AM_expression.xls<br>Supplementary_file_2_MO_expression.xlsSupplementary_file_3_immunity.pdf<br>Supplementary_file_4_data_and_mapping_statistics.doc<br>Additional files:(1) Trinity.fasta & Trinity.fasta.transdecoder.pepMeta-transcriptome assembly for M. ovinus, including predicted proteins.<br>(2) Trinity_expressed_decontaminated.fasta & Trinity_expressed_decontaminated.fasta.transdecoder.pepFiltered reference transcriptome assembly (including proteome) for M. ovinus. Bacterial, kinetoplastid, and chordate transcripts were removed and only transcripts with digital expression &gt; 1 were retained.<br>(3) trinotate_annotation_report.xlsAnnotation report for all the transcripts.<br>(4) TrinotateWeb.sqliteTrinotateWeb.sqlite database with complete data for M. ovinus analyses.<br>(5) Supplementary figures with quality check analyses for individual samples/replicates and non-interactive differential expression visualization (Volcano and MA plots).<br>(6) AME_300418.gbkArsenophonus melophagi genbank file with updated pseudogene calls.<br>(7) AME_pathways.pdfCellular overview of A. melophagi with enzymatic steps filled by heatmap colors according to their FPKM expression (log scale).
DOI: 10.6084/m9.figshare.6146777.v3
title: Melophagus metatranscriptome

description: Supplementary files:<br>Supplementary_file_1_AM_expression.xls<br>Supplementary_file_2_MO_expression.xlsSupplementary_file_3_immunity.pdf<br>Supplementary_file_4_data_and_mapping_statistics.doc<br>Additional files:(1) Trinity.fasta & Trinity.fasta.transdecoder.pepMeta-transcriptome assembly for M. ovinus, including predicted proteins.<br>(2) Trinity_expressed_decontaminated.fasta & Trinity_expressed_decontaminated.fasta.transdecoder.pepFiltered reference transcriptome assembly (including proteome) for M. ovinus. Bacterial, kinetoplastid, and chordate transcripts were removed and only transcripts with digital expression &gt; 1 were retained.<br>(3) trinotate_annotation_report.xlsAnnotation report for all the transcripts.<br>(4) TrinotateWeb.sqliteTrinotateWeb.sqlite database with complete data for M. ovinus analyses.<br>(5) Supplementary figures with quality check analyses for individual samples/replicates and non-interactive differential expression visualization (Volcano and MA plots).<br>(6) AME_300418.gbkArsenophonus melophagi genbank file with updated pseudogene calls.<br>(7) AME_pathways.pdfCellular overview of A. melophagi with enzymatic steps filled by heatmap colors according to their FPKM expression (log scale).
DOI: 10.6084/m9.figshare.6146768
title: Empirical dataset, code and result for Temperate and Tropical conifers analyses.

description: This file contains the data, the R statistical environment scripts and the results for the analyses of the biogeography of Tropical and Temperate conifers. The file is a compressed file in 'tar.gz' format created on a Mac computer.<br>
DOI: 10.6084/m9.figshare.6146768.v1
title: Empirical dataset, code and result for Temperate and Tropical conifers analyses.

description: This file contains the data, the R statistical environment scripts and the results for the analyses of the biogeography of Tropical and Temperate conifers. The file is a compressed file in 'tar.gz' format created on a Mac computer.<br>
DOI: 10.6084/m9.figshare.6146765
title: Supplementary material: GeoSSE+extirpation simulations

description: Data, results and code for the simulation study in the Supplementary Material. Data is stored in 'RData' format for the R statistical programming. Code is available as a Markdown document (both 'Rmd' and 'pdf' formats). Code and markdown was created in RStudio. Results are presented as '.zip' packages.<br>Plese see more information on the 'README.txt' file<br>
DOI: 10.6084/m9.figshare.6146765.v1
title: Supplementary material: GeoSSE+extirpation simulations

description: Data, results and code for the simulation study in the Supplementary Material. Data is stored in 'RData' format for the R statistical programming. Code is available as a Markdown document (both 'Rmd' and 'pdf' formats). Code and markdown was created in RStudio. Results are presented as '.zip' packages.<br>Plese see more information on the 'README.txt' file<br>
DOI: 10.6084/m9.figshare.6146738
title: Dataset for JGR paper "Semi-analytical estimation of energy deposition in the ionosphere by monochromatic Alfven waves"

description: This is an accompanying dataset for a paper to be published at JGR - Space Physics "Semi-analytical estimation of energy deposition in the ionosphere by monochromatic Alfven waves" by Olga P. Verkhoglyadova, Xing Meng, Anthony J. Mannucci,<br>and Ryan M. McGranaghan<br>
DOI: 10.6084/m9.figshare.6146702
title: Tweets using #NENHC18 hashtag

description: All Tweets as of 4/16/2018 using the #NENHC18 hashtag for the Northeast Natural History Conference (April 13-15, 2018, Burlington, VT).
DOI: 10.6084/m9.figshare.6146702.v1
title: Tweets using #NENHC18 hashtag

description: All Tweets as of 4/16/2018 using the #NENHC18 hashtag for the Northeast Natural History Conference (April 13-15, 2018, Burlington, VT).
DOI: 10.6084/m9.figshare.6146672
title: Single ruminal ciliate cells (Sequence file and its metadata)

description: This project contains MiSeq 16S gene sequences retrieved from single ciliates cells of both monocultures of Entodinium caudatum and Epidinium caudatum and eight different ciliate genera isolated from fresh rumen fluid of dairy cows to verify the prokaryotic population in and outside of ciliate cells.<br>Metadata related to those sequences was uploaded as well.<br>
DOI: 10.6084/m9.figshare.6146672.v1
title: Single ruminal ciliate cells (Sequence file and its metadata)

description: This project contains MiSeq 16S gene sequences retrieved from single ciliates cells of both monocultures of Entodinium caudatum and Epidinium caudatum and eight different ciliate genera isolated from fresh rumen fluid of dairy cows to verify the prokaryotic population in and outside of ciliate cells.<br>Metadata related to those sequences was uploaded as well.<br>
DOI: 10.6084/m9.figshare.6146645
title: Simulation study: datasets, code, and results

description: Data set, code and results for the simulations. Data is stored in 'RData' format for the R statistical environment. Code is in Markdown format (both 'Rmd' and the exported 'pdf' files). Results are compressed in .zip files and separated by simulation scenario.<br>See 'README.txt' file for more information.<br>
DOI: 10.6084/m9.figshare.6146597
title: Weather

description: Meteorological data for New York City
DOI: 10.6084/m9.figshare.6146594
title: Gasprices

description: Gasoline price per gallon in NYC
DOI: 10.6084/m9.figshare.6146594.v1
title: Gasprices

description: Gasoline price per gallon in NYC
DOI: 10.6084/m9.figshare.6146567
title: Vehicle-Collisions

description: Traffic collision data provided byNYPD
DOI: 10.6084/m9.figshare.6146567.v1
title: Vehicle-Collisions

description: Traffic collision data provided byNYPD
DOI: 10.6084/m9.figshare.6146519
title: TCGA PanCanAtlas Gene Expression Data

description: Publicly available gene expression dataset from TCGA PanCanAtlas.<br>These data are used by Way et al. 2018 Cell Reports and were previously accessed on Synapse (Data Freeze 1.3.1)<br>For more details see https://www.synapse.org/#!Synapse:syn4976369.3 or https://github.com/greenelab/pancancer/
DOI: 10.6084/m9.figshare.6146516
title: Lista das espécies de Poaceae da Planície de Inundação do Alto Rio Paraná e seu entorno, Mato Grosso do Sul e Paraná, Brasil.List of the species of Poaceae from the Upper Paraná River Floodplain and its surroundings, Mato Grosso do Sul and Paraná, Brazil.

description: Lista das espécies de Poaceae da Planície de Inundação do Alto Rio Paraná e seu entorno, Mato Grosso do Sul e Paraná, Brasil. Abreviações: FF = Fitofisionomia (F = florestal; A = aberta); EAL = Exposição à Luz (E = esciófila; H = heliófila; U = umbrófila); VF = via fotossintética; CHS = condição hídrica do substrato (DRE = drenado; BDR = bem drenado; SAT = saturado; SED = sedimento [lama]); UMV = unidades de morfovegetação, segundo Stevaux <i>et al. </i>(2013) (<i>Anl </i>= <i>Tree-dominated natural levee</i>; <i>SHufp </i>= <i>Shrubby upper floodplain</i>; <i>SHmfp </i>= <i>Shrubby-herbaceous mid-floodplain</i>; <i>GHlfp </i>= <i>Grass-herbaceous lower floodplain </i>e respectivos ambientes); FA = frequência absoluta; FR = frequência relativa. <i>Status</i>: NT = Nativa; NZ = Naturalizada [exótica]. Domínio fitogeográfico: AM = Amazônia; CA = Caatinga; CE = Cerrado; MA = Mata Atlântica; PP = Pampa; PT = Pantanal. <b>Table 1 </b>– List of the species of Poaceae from the Upper Paraná River Floodplain and its surroundings, Mato Grosso do Sul and Paraná, Brazil. Acronyms: FF = Phytophysiognomy (F = forest; A = open formation); EAL = Light Exposure (H = light-demanding; E = esciophylous; U = shade-tolerant); VF = photosynthetic pathway; CHS = water condition of the substrate (DRE = drained; BDR = well drained; SAT = saturated; SED = sediment [mud]); UMV = morphovegetation units, according to Stevaux <i>et al. </i>(2013) (<i>Anl </i>= <i>Tree-dominated natural levee</i>; <i>SHufp </i>= <i>Shrubby upper floodplain</i>; <i>SHmfp </i>= <i>Shrubby-herbaceous mid-floodplain</i>; <i>GHlfp </i>= <i>Grass-herbaceous lower floodplain </i>and respective environments); FA = absolute frequence; FR = relative frequence. <i>Status</i>: NT = native; NZ = naturalized [exotic]; Phytogeographic domain
DOI: 10.6084/m9.figshare.6146507
title: Final Results of iMSD analysis

description: Summary table of structural and dynamics parameters extracted by iMSD analysis
DOI: 10.6084/m9.figshare.6146495
title: iMSD code

description: Matlab script for iMSD analysis
DOI: 10.6084/m9.figshare.6146507.v1
title: Final Results of iMSD analysis

description: Summary table of structural and dynamics parameters extracted by iMSD analysis
DOI: 10.6084/m9.figshare.6146495.v1
title: iMSD code

description: Matlab script for iMSD analysis
DOI: 10.6084/m9.figshare.6146489
title: Tutorial

description: Tutorial for iMSD analysis
DOI: 10.6084/m9.figshare.6146489.v1
title: Tutorial

description: Tutorial for iMSD analysis
DOI: 10.6084/m9.figshare.6146417
title: Citi Bike

description: Data from NYC’s bike sharing system
DOI: 10.6084/m9.figshare.6146417.v1
title: Citi Bike

description: Data from NYC’s bike sharing system
DOI: 10.6084/m9.figshare.6146375
title: ‘It Would Be without Error’: Automated Technology and the Pursuit of Correct Performance in the French Enlightenment

description: Marie-Dominique-Joseph Engramelle’s treatise <i>La tonotechnie, ou l’art de noter les cylindres</i> (1775) claimed that automated instruments driven by pinned cylinders would grant listeners direct access to music as the composer conceived it. Standard notation was insufficient, as it did not capture the music’s <i>mouvement</i> – its temporal flexibility from moment to moment. Denis Diderot provided an aesthetic justification for automated instruments in terms that linked them to materialist philosophy. Like android automata, which simulated life through automated motion, automated musical instruments encoded live music to simulate the ideal performance of a composer. Yet Engramelle’s collaboration with the composer Claude Balbastre, which resulted in a pinned-cylinder <i>notage</i> of one of Balbastre’s keyboard pieces, raises crucial questions about the effectiveness of the technology and its notation, and about Engramelle’s claims and his own musical skill. Engramelle’s project is best understood as a performance unto itself – a manifestation of the cultures of public science that were widespread in the European Enlightenment.
DOI: 10.6084/m9.figshare.6146354
title: 311-Complaints

description: Different types of urban complaints registered by New York City's 311 agency.
DOI: 10.6084/m9.figshare.6146354.v1
title: 311-Complaints

description: Different types of urban complaints registered by New York City's 311 agency.
DOI: 10.6084/m9.figshare.6146297
title: Dataset from Sexual selection predicts species richness across the Animal kingdom

description: Data and references supporting our statistical analysis
DOI: 10.6084/m9.figshare.6146297.v1
title: Dataset from Sexual selection predicts species richness across the Animal kingdom

description: Data and references supporting our statistical analysis
DOI: 10.6084/m9.figshare.6146294
title: Tabela 1 - Poaceae....

description: Lista das espécies de Poaceae da Planície de Inundação do Alto Rio Paraná e seu entorno, Mato Grosso do Sul e Paraná, Brasil. <br>List of the species of Poaceae from the Upper Paraná River Floodplain and its surroundings, Mato Grosso do Sul and Paraná, Brazil.<br>
DOI: 10.6084/m9.figshare.6146294.v1
title: Tabela 1 - Poaceae....

description: Lista das espécies de Poaceae da Planície de Inundação do Alto Rio Paraná e seu entorno, Mato Grosso do Sul e Paraná, Brasil. <br>List of the species of Poaceae from the Upper Paraná River Floodplain and its surroundings, Mato Grosso do Sul and Paraná, Brazil.<br>
DOI: 10.6084/m9.figshare.6146291
title: PC Scores

description: PC Scores used to calculate the effect size according to Cohen's d
DOI: 10.6084/m9.figshare.6146291.v1
title: PC Scores

description: PC Scores used to calculate the effect size according to Cohen's d
DOI: 10.6084/m9.figshare.6144461
title: replication_data.xlsx

description: The raw data obtained in the research of Nitta, Tomita, Zhang, Zhou, & Yamada (2018) in <i>Cognitive Research: Principles and Implications</i>.<br>
DOI: 10.6084/m9.figshare.6144461.v2
title: replication_data.xlsx

description: The raw data obtained in the research of Nitta, Tomita, Zhang, Zhou, & Yamada (2018) in <i>Cognitive Research: Principles and Implications</i>.<br>
DOI: 10.6084/m9.figshare.6144461.v1
title: replication_data.xlsx

description: The raw data obtained in the research of Nitta, Tomita, Zhang, Zhou, & Yamada (2018) in <i>Cognitive Research: Principles and Implications</i>.<br>
DOI: 10.6084/m9.figshare.6144428
title: cytb and FGB alignments for concatenate analysis

description: Alignments of cytb and FGB genes sequences from representatives of Oligoryzomys for concatenate analyses
DOI: 10.6084/m9.figshare.6144422
title: The Gaussian Graphical Model in Cross-Sectional and Time-Series Data

description: We discuss the Gaussian graphical model (GGM; an undirected network of partial correlation coefficients) and detail its utility as an exploratory data analysis tool. The GGM shows which variables predict one-another, allows for sparse modeling of covariance structures, and may highlight potential causal relationships between observed variables. We describe the utility in three kinds of psychological data sets: data sets in which consecutive cases are assumed independent (e.g., cross-sectional data), temporally ordered data sets (e.g., <i>n</i> = 1 time series), and a mixture of the 2 (e.g., <i>n</i> &gt; 1 time series). In time-series analysis, the GGM can be used to model the residual structure of a vector-autoregression analysis (VAR), also termed <i>graphical VAR</i>. Two network models can then be obtained: a temporal network and a contemporaneous network. When analyzing data from multiple subjects, a GGM can also be formed on the covariance structure of stationary means—the between-subjects network. We discuss the interpretation of these models and propose estimation methods to obtain these networks, which we implement in the R packages <i>graphicalVAR</i> and <i>mlVAR</i>. The methods are showcased in two empirical examples, and simulation studies on these methods are included in the supplementary materials.
DOI: 10.6084/m9.figshare.6144407
title: helico

description: <b>Gut microbiota in hospitalized children under 5 years with acute infective gastroenteritis caused by virus or bacteria in a regional Peruvian hospital</b><br><b><br></b><b>ABSTRACT</b> <b>Objective: </b>The main objective of this study was to describe the prevalence of 13 representative bacteria from the gut microbiota (GM) in stools samples from children under 5 years of age with acute infective gastroenteritis (AIG) as well as to describe clinical and demographic features from our study population.<b></b> <b>Results:</b> The most commonly isolated bacteria from the GM were Firmicutes (63.2%) Bacteriodetes (62.4%), Lactobacillus (59.8%), Prevotella (57.3%), Proteobacterium (53.8%), regardless of the etiological agent responsible for the AIG.<b> </b>Interestingly, despite the high prevalence of Firmicutes, Bacteroidetes, Lactobacillus, and Prevotella across all samples, a visible reduction of these agents was observed especially among patients with a single bacterial infection or even bacteria – bacteria coinfections when compared to viral etiologies. Patients with exclusive or mixed breastfeeding registered the highest amount of gut microbiota bacteria, in contrast to infants who received formula or were not breastfed. <b>Keywords</b><b>: </b>Intestinal microbiota, acute enteritis, child, bacterial infection, viral infection, gastrointestinal infection
DOI: 10.6084/m9.figshare.6144353
title: Platanthera praeclara phenology data

description: These data are associated with the manuscript " Using phenological monitoring <i>in situ</i> and historical records to determine environmental triggers for emergence and anthesis in the rare orchid <i>Platanthera praeclara</i> Sheviak & Bowles"
DOI: 10.6084/m9.figshare.6144353.v1
title: Platanthera praeclara phenology data

description: These data are associated with the manuscript " Using phenological monitoring <i>in situ</i> and historical records to determine environmental triggers for emergence and anthesis in the rare orchid <i>Platanthera praeclara</i> Sheviak & Bowles"