cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.1597g.2/10.2
title: EC-BILT NA Climates 21ka-0ka, Min & Max Temperature

description: Downscaled and debiased paleoclimatic simulations from EC-BILT (Timm & Timmermann, 2007). Downscaled to 0.5deg lat/lon and decadal resolution for North America for 21,000 years ago to 20th century. Variables: mean minimum daily temperature, mean maximum daily temperature.
DOI: 10.5061/dryad.1597g.2/11.2
title: EC-BILT NA Climates 21ka-0ka, AET & PET

description: Downscaled and debiased paleoclimatic simulations from EC-BILT (Timm & Timmermann, 2007). Downscaled to 0.5deg lat/lon and decadal resolution for North America for 21,000 years ago to 20th century. Variables: potential evapotranspiration, actual evapotranspiration
DOI: 10.5061/dryad.1597g.2/12.2
title: EC-BILT NA Climates 21ka-0ka, Precipitation

description: Downscaled and debiased paleoclimatic simulations from EC-BILT (Timm & Timmermann, 2007). Downscaled to 0.5deg lat/lon and decadal resolution for North America for 21,000 years ago to 20th century. Variable: mean total monthly precipitation
DOI: 10.5061/dryad.1597g.2/13.2
title: EC-BILT NA Climates 21ka-0ka, Growing Degree Days

description: Downscaled and debiased paleoclimatic simulations from EC-BILT (Timm & Timmermann, 2007). Downscaled to 0.5deg lat/lon and decadal resolution for North America for 21,000 years ago to 20th century. Variables: growing degree days, base 5C & 0C.
DOI: 10.5061/dryad.1597g.2/14.2
title: EC-BILT NA Climates 21ka-0ka, Water Vapor Pressure

description: Downscaled and debiased paleoclimatic simulations from EC-BILT (Timm & Timmermann, 2007). Downscaled to 0.5deg lat/lon and decadal resolution for North America for 21,000 years ago to 20th century. Variable: mean monthly water vapor pressure.
DOI: 10.5061/dryad.1597g.2/15.2
title: EC-BILT NA Climates 21ka-0ka, Downward Shortwave Radiation

description: Downscaled and debiased paleoclimatic simulations from EC-BILT (Timm & Timmermann, 2007). Downscaled to 0.5deg lat/lon and decadal resolution for North America for 21,000 years ago to 20th century. Variable: mean monthly downward shortwave radiation at surface.
DOI: 10.5061/dryad.1597g.2/16.2
title: EC-BILT NA Climates 21ka-0ka, Net Downward Longwave Radiation

description: Downscaled and debiased paleoclimatic simulations from EC-BILT (Timm & Timmermann, 2007). Downscaled to 0.5deg lat/lon and decadal resolution for North America for 21,000 years ago to 20th century. Variables: mean monthly net downward longwave radiation at surface
DOI: 10.5061/dryad.1597g.2/17.2
title: EC-BILT NA Climates 21ka-0ka, Upward Shortwave Radiation

description: Downscaled and debiased paleoclimatic simulations from EC-BILT (Timm & Timmermann, 2007). Downscaled to 0.5deg lat/lon and decadal resolution for North America for 21,000 years ago to 20th century. Variable: mean monthly upward shortwave radiation at surface.
DOI: 10.5061/dryad.1597g.2/8.2
title: CCSM3 NA Climates 22ka-0ka, Water Vapor Pressure

description: Downscaled and debiased paleoclimatic simulations from CCSM3  (Liu et al. 2009). Downscaled to 0.5deg lat/lon and decadal resolution for North America for 22,000 years ago to 20th century. Variables: mean monthly water vapor pressure
DOI: 10.5061/dryad.1597g.2/9.2
title: CCSM3 NA Climates 22ka-0ka, Wind Speed

description: Downscaled and debiased paleoclimatic simulations from CCSM3  (Liu et al. 2009). Downscaled to 0.5deg lat/lon and decadal resolution for North America for 22,000 years ago to 20th century. Variable:  mean monthly wind speed
DOI: 10.5061/dryad.24v57/6
title: Alignment gene TYRP1

description: Sequence alignment from TYRP1 gene exons 1 to 8 in Creole sheep breed.
DOI: 10.5061/dryad.24v57/7
title: Alignment KIT gene

description: Sequence alignment from KIT gene exons 2 to 21 in Creole sheep breed.
DOI: 10.5061/dryad.2v1p6/14
title: Fig S6

description: Plots of the posterior distributions of parameters estimated in spatial demographic models.
DOI: 10.5061/dryad.3bd65/1
title: Perl_Niven_2016_colony_level_ant_scaling
DOI: 10.5061/dryad.3ms19/1
title: BRANCHLESS TRICHOME Alignment

description: Partial sequence alignment of Brassicaceae BRANCHLESS TRICHOME (BLT) homologues. Sequences were assembled, edited, and manually aligned by codon using Geneious Pro (version 5.6.6, Biomatters, Auckland, New Zealand; http://www.geneious.com; Kearse et al. 2012).
DOI: 10.5061/dryad.3ms19/2
title: ITS Alignment

description: Partial sequence alignment of Brassicaceae ITS homologues. Sequences were assembled, edited, and aligned using Geneious Pro (version 5.6.6, Biomatters, Auckland, New Zealand; http://www.geneious.com; Kearse et al. 2012). Sequences were aligned with the MUSCLE algorithm (Edgar 2004) and then manually adjusted.
DOI: 10.5061/dryad.3r041/1
title: ALI_ AGRAWAL 2016_DATA

description: Larval weight data, Larval survival data, HPLC cardenolide determinations from plant and larval tissue, Entomopathogenic nematode performance data. The excel file contains two sheets listing experimental data and a short descriptions of abbreviations where necessary.
DOI: 10.5061/dryad.447sq/1
title: individual_collection_data

description: Host plant nutrition and butterfly life history and morphological data for butterflies from museum collection. Each row represents an individual butterfly. Variables determined as described in associated manuscript. Average eye width measured in mm. Wing length measured in cm. Wing length was log transformed for analyses. Nutrient data is in units of % dry mass for host plant material, calculations described in manuscript.
DOI: 10.5061/dryad.447sq/2
title: individual_field_data

description: Host plant nutrition, butterfly life history and morphological data from wild-collected butterflies. Each row represents an individual. Genitalia area was measured in mm^2, and wing length in cm. Wing length was log transformed for analysis. Nutrition data measured in % dry mass, calculated as described in the manuscript. This data is needed for the example code to work. Example code is  located at: https://github.com/EMSwanson/Published-papers with filename "PGLS analyses for egg number and nitrogen females.R"
DOI: 10.5061/dryad.447sq/3
title: butterfly_tree

description: This file contains the phylogeny used for the analyses in the associated paper. Example code for loading phylogeny, and running PGLS analysis for fecundity and nitrogen from the "individual_field_data.csv" located at: https://github.com/EMSwanson/Published-papers with filename "PGLS analyses for egg number and nitrogen females.R".
DOI: 10.5061/dryad.4s5r6/1
title: Clusters and normalized expression tables

description: For each gene, lists the normalized expression data for each life stage, and (if significantly differentially expressed) which expression super cluster it is grouped into.
DOI: 10.5061/dryad.4s5r6/2
title: nGr.v1.0.annotation+TE

description: GFF file with locations of all gene calls in the G. rostochiensis genome and all transposable element predictions.
DOI: 10.5061/dryad.4s5r6/3
title: nGr.v1.0.blast2go

description: blast2go annotation as gff3 file
DOI: 10.5061/dryad.4s5r6/4
title: nGr.v1.0.blast2go.txt

description: blast2go annotation as gzipped text file
DOI: 10.5061/dryad.4s5r6/5
title: nGr.v1.0.iprscan.xml

description: inter pro scan as gzipped xml
DOI: 10.5061/dryad.4s5r6/6
title: nGr.v1.0.iprscan.xml

description: interproscan as tsv
DOI: 10.5061/dryad.4s5r6/7
title: Gr_pops.new.vs.nGr.v1.1.GQ.vcf.norm.filtered.vcf.snpeff.vcf.gz.data.txt

description: snpeff parsed vcf for G. rostochiensis pathotypes Ro1, 2, 3, 4, 5.
DOI: 10.5061/dryad.7qv72/31
title: SuperTREE_IC.MRE.39tax.58loci.CON75percent

description: Tree file underlying internode certainty analysis
DOI: 10.5061/dryad.7qv72/32
title: readme_align

description: ReadMe file for all alignments and tree files associated with this submission.
DOI: 10.5061/dryad.96m9r/1
title: StetzEtAl_River_otter SNPs_COGR_si

description: Table S1: Allelic diversity and heterozygosity of 52-locus SNP-array for North American river otters identified through RAD sequencing.
DOI: 10.5061/dryad.b0b68/1
title: Supplementary tables S1 and S2

description: Supplementary tables S1 and S2
DOI: 10.5061/dryad.cc630/1
title: Data and code for "Population density, not host competence, drives patterns of disease in an invaded community"

description: This zip file includes data and non-trivial code for the mathematical model in "Population density, not host competence, drives patterns of disease in an invaded community" by Searle et al. for The American Naturalist. A description of the files is included.
DOI: 10.5061/dryad.f9k77/3
title: MSF007_SunflowerData_20151020_anonymised

description: Sunflower data as uploaded to project website by the public and anonymized.
DOI: 10.5061/dryad.f9k77/4
title: MOSIpaperPE Sweave source

description: Source code used to generate all figures, tables and text of the paper. In combination with the spreadsheets, can be compiled using R and standard libraries to create a tex file. The tex file can be compiled to PDF using pdflatex and standard packages.
DOI: 10.5061/dryad.fb300/1
title: Folder 1 - linescans

description: Folder contains linescans in TIF format of the four atrial cells referred to in Figure 1 of the manuscript.
DOI: 10.5061/dryad.fb300/2
title: Folder 2 - di-8-ANEPPS

description: A folder containing two further folders ('atrial' and 'ventricular'), which contain, respectively, TIF images of the 10 atrial and 4 ventricular di-8-ANEPPS-stained cells referred to in Figure 2.
DOI: 10.5061/dryad.fb300/3
title: Sham v control TTD

description: A spreadsheet containing t-tubule densities (TTD) of atrial and ventricular cells from Sham and Control animals to establish that there was no difference the t-tubule network in either atrial or ventricular cells between these two groups of animals.
DOI: 10.5061/dryad.fb300/4
title: Control atrial 1

description: Original images of sections from atrial tissue from control animals used for analysis presented in Figures 4 - 6. Folder 1 of 5.
DOI: 10.5061/dryad.g08m0/1
title: Tables_1_2_3_8_PlosONE

description: The raw behavioral data from which Tables 1-3 were generated and the matrix with the pity-differential scores, attitude scale scores, and peak-based parameter estimates used for the hierarchical regression analysis reported in Table 8.
DOI: 10.5061/dryad.g928q/1
title: Data, code, results, and figures for the paper.

description: The zip file contains everything necessary to reproduce the entire analysis. See the readme.txt for instructions.
DOI: 10.5061/dryad.m23g6/1
title: Spider prey consumption and trait response data

description: Data collected from funnel-web-building wolf spiders (Sosippus floridanus) in laboratory mesocosms. Units of measurement are: web area (cm2), web height (cm), difference in trichome density (number of trichomes/cm2), difference in trapping area (cm2), and sum trapping area (cm2).
DOI: 10.5061/dryad.m23g6/2
title: Sundew prey consumption and trait response data

description: Data collected from pink sundews (Drosera capillaris) in laboratory mesocosms. Units of measurement are: web area (cm2), web height (cm), difference in trichome density (number of trichomes/cm2), difference in trapping area (cm2), and sum trapping area (cm2).
DOI: 10.5061/dryad.m23g6/3
title: Toad prey consumption and trait response data

description: Data collected from oak toads (Anaxyrus quercicus) in laboratory mesocosms. Units of measurement are: web area (cm2), web height (cm), toad growth (g), difference in trichome density (number of trichomes/cm2), difference in trapping area (cm2), and sum trapping area (cm2).
DOI: 10.5061/dryad.qg6q2/1
title: Raw CDF files, sample information, code to process them

description: This is a zipped directory. Once unzipped, it has the following directory structure: Neg (directory), Pos (directory), DMD_Metabolomics_samples_files.csv, process_data.R . The Neg and Pos directories each have a DMD directory and a Normal directory, along with the files Annodiffre_neg.RData and Annodiffre_pos.RData, respectively, which are generated by running the code in process_data.R . The files in the DMD and Normal directories are raw CDF files consisting of the samples from DMD patients and from healthy (normal) controls, respectively. The Neg and Pos directories correspond to the negative, respectively, positive modes. The sample information is given in the DMD_Metabolomics_samples_files.csv file.
DOI: 10.5061/dryad.r1d8q/1
title: full-cytb dataset

description: NEXUS file containing the 'full-cytb' dataset alignment, which includes 408 mtDNA sequences of the mitochondrial cytochrome b gene. This file includes sequences from 318 ingroup samples and from 90 outgroup samples (see text and Supporting information Data S1 for details).
DOI: 10.5061/dryad.r1d8q/2
title: cytb haplotype dataset

description: NEXUS file containing the 'cytb haplotype' dataset alignment, which includes 106 ingroup cytochrome b haplotype sequences plus 86 outgroup sequences.
DOI: 10.5061/dryad.r1d8q/3
title: reduced-cytb dataset

description: NEXUS file containing the 'reduced-cytb' dataset alignment, which includes sequences of the cytochrome b gene for a subset of 20 ingroup samples and 18 outgroup samples. The ingroup samples in this file represent five samples per nominal Amatitlania species, as well as five samples from the Lago Coatepeque, El Salvador population formerly known as 'A. coatepeque'.
DOI: 10.5061/dryad.s55f5/1
title: Microsatellite Genotypes
DOI: 10.5061/dryad.s55f5/2
title: custom Perl scripts
DOI: 10.5061/dryad.sq135/1
title: Little and great bustard observations in central Spain
DOI: 10.5061/dryad.v286m/2
title: Mating success matrices

description: This parental table describes mating success between pairs of possible parents in each  of the two experimental treatment (constant versus stochastic flow). The mating success is either equal to zero if no offspring were found, or equal to one if at least one offspring was found. The number of offspring was assigned to parental pairs using genetic assignation.
DOI: 10.5061/dryad.v286m/3
title: Reproductive success matrices.

description: This table describes the number of offspring produced by possible parental pairs in each of the experimental treatment (constant versus stochastic flow). The number of offspring was estimated using genetic assignation based on microsatellite markers (see associated reference).
DOI: 10.5061/dryad.v4t42/1
title: Baboon data

description: Modified baboon data taken from Dryad Digital Repository:  Sick C, Carter AJ, Marshall HH, Knapp LA, Dabelsteen T, Cowlishaw G (2014) Data from: Evidence for varying social strategies across the day in chacma baboons. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.n4k6p
DOI: 10.5061/dryad.v4t42/2
title: Owl data

description: The meaning of the variables is self-explanatory.
DOI: 10.5061/dryad.v4t42/3
title: Oystercatcher data
DOI: 10.5061/dryad.v4t42/4
title: R code

description: This file contains all the R code used to generate the graphs and tables.
DOI: 10.5061/dryad.1597g.2/18.2
title: CMIP5 NA Climates 1950-2005AD, Historical Scenario (1/2)

description: Downscaled and debiased paleoclimatic simulations from the CMIP5 historical scenario. Downscaled to 0.5deg lat/lon and represents a mean climatology for 1950-2005.  Downscaling follows same procedures as for paleoclimatic simulations.  Multiple climatic variables are included in this file.  To meet Dryad upload limits, this file holds data from 6 of 12 downscaled CMIP5 models
DOI: 10.5061/dryad.1597g.2/19.2
title: CMIP5 NA Climates 1950-2005AD, Historical Scenario (2/2)

description: Downscaled and debiased paleoclimatic simulations from the CMIP5 historical scenario. Downscaled to 0.5deg lat/lon and represents a mean climatology for 1950-2005.  Downscaling follows same procedures as for paleoclimatic simulations.  Multiple climatic variables are included in this file.  To meet Dryad upload limits, this file holds data from 6 of 12 downscaled CMIP5 models
DOI: 10.5061/dryad.1597g.2/20.2
title: CMIP5 NA Climates 2010-2100AD, RCP 4.5 Scenario (1/3)

description: CMIP5 NA Climates 2010-2100AD, RCP 4.5 Scenario (1/3)the CMIP5 RCP4.5 scenario. Downscaled to 0.5deg lat/lon and extracted at decadal intervals from 2010 to 2100  Downscaling follows same procedures as for paleoclimatic simulations.  Multiple climatic variables are included in this file.  To meet Dryad upload limits, this file holds data from 4 of 12 downscaled CMIP5 models.
DOI: 10.5061/dryad.1597g.2/21.2
title: CMIP5 NA Climates 2010-2100AD, RCP 4.5 Scenario (2/3)

description: Downscaled and debiased paleoclimatic simulations from the CMIP5 RCP4.5 scenario. Downscaled to 0.5deg lat/lon and extracted at decadal intervals from 2010 to 2100  Downscaling follows same procedures as for paleoclimatic simulations.  Multiple climatic variables are included in this file.  To meet Dryad upload limits, this file holds data from 4 of 12 downscaled CMIP5 models.
DOI: 10.5061/dryad.1597g.2/22.2
title: CMIP5 NA Climates 2010-2100AD, RCP 4.5 Scenario (3/3)

description: Downscaled and debiased paleoclimatic simulations from the CMIP5 RCP4.5 scenario. Downscaled to 0.5deg lat/lon and extracted at decadal intervals from 2010 to 2100  Downscaling follows same procedures as for paleoclimatic simulations.  Multiple climatic variables are included in this file.  To meet Dryad upload limits, this file holds data from 4 of 12 downscaled CMIP5 models.
DOI: 10.5061/dryad.1597g.2/23.2
title: CMIP5 NA Climates 2010-2100AD, RCP 8.5 Scenario (1/3)

description: CMIP5 NA Climates 2010-2100AD, RCP 8.5 Scenario (1/3)Downscaled and debiased paleoclimatic simulations from the CMIP5 RCP4.5 scenario. Downscaled to 0.5deg lat/lon and extracted at decadal intervals from 2010 to 2100  Downscaling follows same procedures as for paleoclimatic simulations.  Multiple climatic variables are included in this file.  To meet Dryad upload limits, this file holds data from 4 of 12 downscaled CMIP5 models.
DOI: 10.5061/dryad.1597g.2/24.2
title: CMIP5 NA Climates 2010-2100AD, RCP 8.5 Scenario (2/3)

description: Downscaled and debiased paleoclimatic simulations from the CMIP5 RCP8.5 scenario. Downscaled to 0.5deg lat/lon and extracted at decadal intervals from 2010 to 2100.  Downscaling follows same procedures as for paleoclimatic simulations.  Multiple climatic variables and models are included in this file.  To meet Dryad upload limits, this file holds data from 4 of 12 downscaled CMIP5 models.
DOI: 10.5061/dryad.1597g.2/25.2
title: CMIP5 NA Climates 2010-2100AD, RCP 8.5 Scenario (3/3)

description: Downscaled and debiased paleoclimatic simulations from the CMIP5 RCP8.5 scenario. Downscaled to 0.5deg lat/lon and extracted at decadal intervals from 2010 to 2100.  Downscaling follows same procedures as for paleoclimatic simulations.  Multiple climatic variables and models are included in this file.  To meet Dryad upload limits, this file holds data from 4 of 12 downscaled CMIP5 models.
DOI: 10.5061/dryad.1597g.2/26.2
title: CCSM3 NA Climates 22ka-0ka, TIFS

description: Downscaled and debiased paleoclimatic simulations from CCSM3 (Liu et al. 2009). Downscaled to 0.5deg lat/lon and 500-year resolution for North America for 22,000 years ago to the 20th century. These TIFS were generated from the decadal-scale NetCDF data, and extracted as climatic summaries comprising 200-year bins and spaced 500 years apart.  They are formatted for direct input into species distribution models. Multiple climate variables are included in this file.
DOI: 10.5061/dryad.2q5h1/1
title: HARVEY et al 2016 ROS

description: raw data associated with the manuscript
DOI: 10.5061/dryad.4f6fd/1
title: Poverty and AFI Dataset

description: Data underlying the publication titled, "The relationship between poverty and healthcare seeking among patients hospitalized with acute febrile illnesses in Chittagong, Bangladesh."
DOI: 10.5061/dryad.4nb25/1
title: Oregon chub genotypes

description: Individual genotypes at 9 microsatellite loci for Oregon chub from source and introduced populations.
DOI: 10.5061/dryad.4s5r6/8
title: Gr_pops.new.vs.nGr.v1.1.GQ.vcf.norm.filtered.vcf.snpeff.vcf

description: Raw VCF for G. rostochiensis pathotypes Ro1, 2, 3, 4, 5.
DOI: 10.5061/dryad.4t8h5/1
title: Skov_SoaringMigrants_MarineWindFarms_RealTimeTracking

description: Radar and laser rangefinder track data on migrating raptors from study site and two reference sites. Each record represents a track node.
DOI: 10.5061/dryad.50410/1
title: Image files used for RICS and N&B analysis of 35S:GFP and UBQ10:mCherry

description: Images used for RICS and N&B analysis of 35S:GFP and UBQ10:mCherry lines. Images were acquired using a Zeiss 710 or Zeiss 780 confocal microscope. Images can be viewed using the Zen imaging software. Images were analyzed using the SimFCS software.
DOI: 10.5061/dryad.50410/2
title: Image files used in RICS and N&B analysis of SHR:SHR-GFP, SHR:SHR-GFP in SCRi, SCR:SCR-GFP, and SHR:SHR-GFP/SCR:SCR-mCherry

description: Images used for RICS and N&B analysis of SHR:SHR-GFP, SHR:SHR-GFP in SCRi, SCR:SCR-GFP, and SHR:SHR-GFP/SCR:SCR-mCherry lines. Images were acquired using a Zeiss 710 or Zeiss 780 confocal microscope. Images can be viewed using the Zen imaging software. Images were analyzed using the SimFCS software.
DOI: 10.5061/dryad.50410/3
title: Image files used for pCF analysis

description: Image files used for pCF analysis of 35S:GFP, TMO5:3xGFP, SHR:SHR-GFP, SHR:SHR-GFP in SCRi, and SCR:SCR-GFP lines. Images were acquired using either a Zeiss 710 or Zeiss 780 confocal microscope. Images can be viewed using the Zen imaging software. Images were analyzed using the SimFCS software.
DOI: 10.5061/dryad.50410/4
title: Data tables

description: Data tables for all images. All statistical analysis was performed using JMP software. The .csv files are formatted for easy import into the JMP software.
DOI: 10.5061/dryad.58m67/1
title: Gas Emissions Feb 2016 final_for-Dryad

description: Measurement data of gas emissions
DOI: 10.5061/dryad.58m67/2
title: Statistical tests in R
DOI: 10.5061/dryad.60hp6/1
title: Adaptability Experiment Data

description: Network information from the four adaptability experiments. There are a separate sub-folders for each of the adaptability experiment. A sub-folder has all networks evolved in the new environment, and for each network there is the individual.log file that contains the performance, modularity, hierarchy, and connection cost values.
DOI: 10.5061/dryad.60hp6/2
title: AND-EQU-AND Experiment Data

description: All the PA and P&CC networks from the AND-EQU-AND experiment are included. For both treatments, the data package contains network descritptions (in XML format) at generations 0 and 2500. Futhermore, for each network,  the individual.log file provides the performance, modularity, hierarchy, and connection cost values of that networks. The solvent.txt file indicate the percentage of sub-problems that the network solves.
DOI: 10.5061/dryad.60hp6/3
title: Main Experiment Data

description: The main experimental data contains all evovled networks from PA and P&CC treatments. Network description at the 0th and 2500th generations are provided in XML format. For both final PA and P&CC networks, the individual.log file contains the performance, modularity, hierarchy, and connection cost values, and solvent.txt file has the value for the percentage of sub-problem solved.
DOI: 10.5061/dryad.60hp6/4
title: Long Range Connection Experiment Data

description: All the PA and the P&CC networks from the experiment that allows connections to skip layers are included. In XML format, we provide network descritptions at the 0th and 2500th generations.
DOI: 10.5061/dryad.60hp6/5
title: Map-elites Exeriment Data

description: This data package contains a data file containing the performance, modularity, hierarchy of networks evolved via the map-elites algorithm. The data was dipicted in Fig.7 in the main manuscript.