cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17086715.v1
title: Dunlop et al_Data support Nutrients 1440930.xlsx

description: Data sets supporting presented figures
DOI: 10.5281/zenodo.5732504
title: Datasets used in 'A fractal model for effective excess charge density in variably saturated fractured rocks'

description: These datasets are uploaded to support the research study 'A fractal model for effective excess charge density in variably saturated fractured rocks' by L. Guarracino and D. Jougnot (submitted to JGR: Solid Earth, 2021). Datasets include:<br> a) Fortran source code (qvfrac.f) for estimating the effective excess charge density in fractured rocks. The calculation is based on model equations described in the research study.<br> b) Coupling coefficient data (cc-moore.txt) extracted from Figure 5 of the paper Self-potential observations during hydraulic fracturing, Moore, J. R., and S. D. Glaser (2007), J. Geophys. Res., 112, B02204, doi:10.1029/2006JB004373.
DOI: 10.6084/m9.figshare.16622572
title: Supplementary files: The association between therapeutic plasma exchange and the risk of mortality among patients with critically ill COVID-19: a meta-analysis

description: Supplementary files: The association between therapeutic plasma exchange and the risk of mortality among patients with critically ill COVID-19: a meta-analysis
DOI: 10.6084/m9.figshare.16622572.v2
title: Supplementary files: The association between therapeutic plasma exchange and the risk of mortality among patients with critically ill COVID-19: a meta-analysis

description: Supplementary files: The association between therapeutic plasma exchange and the risk of mortality among patients with critically ill COVID-19: a meta-analysis
DOI: 10.6084/m9.figshare.16622572.v1
title: Supplementary files: The association between therapeutic plasma exchange and the risk of mortality among patients with critically ill COVID-19: a meta-analysis

description: Supplementary files: The association between therapeutic plasma exchange and the risk of mortality among patients with critically ill COVID-19: a meta-analysis
DOI: 10.34740/kaggle/dsv/2862580
title: Economic Effects Of Covid-19 Lockdown On Tourism
DOI: 10.5281/zenodo.5733072
title: Public attitudes to a human challenge study with SARS-CoV-2: a mixed-methods study

description: Human challenge studies involve the deliberate exposure of healthy volunteers to an infectious micro-organism in a highly controlled and monitored way. They are used to understand infectious diseases and have contributed to the development of vaccines. In early 2020, the UK started exploring the feasibility of establishing a human challenge study with SARS-CoV-2. Given the significant public interest and the complexity of the potential risks and benefits, it is vital that public views are considered in the design and approval of any such study and that investigators and ethics boards remain accountable to the public. We conducted a mixed methods study comprising online surveys conducted with 2,441 UK adults and in-depth virtual focus groups with 57 UK adults during October 2020 to explore the public’s attitudes to a human challenge study with SARS-CoV-2 taking place in the UK. This depositary includes: Documentation relating to the online surveys; Survey Animation that survey participants were asked to view Survey wrappers (invitations, participant information sheet and consent, end of survey messages) Survey data (demographic information not included) Documentation relating to focus groups: Participant Information Sheet Focus Group Discussion guide
DOI: 10.5281/zenodo.5722108
title: Single-cell RNA sequencing of Blood-infiltrating HSC-derived phagocytes of Ms4a3Ai14 using 10X Genomics platform. IFN-γ and GM-CSF control complementary differentiation programs in the monocyte to phagocyte transition during neuroinflammation.

description: <strong>Single-cell RNA sequencing of Blood-infiltrating HSC-derived phagocytes of <em>Ms4a3</em><sup>Ai14</sup> at onset and peak EAE using 10X Genomics platform.</strong> The sorted cells were loaded into 10x Genomics Chromium in parallel. Libraries were prepared as per the manufacturer's protocol (Chromium Next GEM Single Cell 3ʹ Reagent Kits v3.1 protocol) and sequenced on an Illumina NovaSeq sequencer according to 10X Genomics recommendations (paired-end reads, R1=28, i7=8, R2=91) to a depth of around 50,000 reads per cell. Initial processing was done using Cell Ranger (v3.1.0) mkfastq and count (reads were aligned to GENCODE reference build GRCm38.p6 Release M23 with added tdTomato sequence for the dataset from <em>Ms4a3</em><sup>Ai14</sup> mouse and collapse UMIs). Starting from the filtered gene-cell count matrix produced by CellRranger's in-built cell calling algorithms, we proceeded with Seurat v4 workflow.
DOI: 10.5281/zenodo.5722107
title: Single-cell RNA sequencing of Blood-infiltrating HSC-derived phagocytes of Ms4a3Ai14 using 10X Genomics platform. IFN-γ and GM-CSF control complementary differentiation programs in the monocyte to phagocyte transition during neuroinflammation.

description: <strong>Single-cell RNA sequencing of Blood-infiltrating HSC-derived phagocytes of <em>Ms4a3</em><sup>Ai14</sup> at onset and peak EAE using 10X Genomics platform.</strong> The sorted cells were loaded into 10x Genomics Chromium in parallel. Libraries were prepared as per the manufacturer's protocol (Chromium Next GEM Single Cell 3ʹ Reagent Kits v3.1 protocol) and sequenced on an Illumina NovaSeq sequencer according to 10X Genomics recommendations (paired-end reads, R1=28, i7=8, R2=91) to a depth of around 50,000 reads per cell. Initial processing was done using Cell Ranger (v3.1.0) mkfastq and count (reads were aligned to GENCODE reference build GRCm38.p6 Release M23 with added tdTomato sequence for the dataset from <em>Ms4a3</em><sup>Ai14</sup> mouse and collapse UMIs). Starting from the filtered gene-cell count matrix produced by CellRranger's in-built cell calling algorithms, we proceeded with Seurat v4 workflow.
DOI: 10.5281/zenodo.5722170
title: Single-cell RNA sequencing of CNS-infiltrating HSC-derived phagocytes of Ms4a3Ai14, BM chimeric mice (CD45.2 Csf2rb-/-: CD45.1 Csf2rb+/+ and CD45.2 Ifngr1-/-: CD45.1 Ifngr1+/+) using 10X Genomics platform. IFN-γ and GM-CSF control complementary differentiation programs in the monocyte to phagocyte transition during neuroinflammation.

description: <strong>Single-cell RNA sequencing of CNS-infiltrating HSC-derived phagocytes of <em>Ms4a3</em><sup>Ai14</sup> at onset and peak EAE, BM chimeric mice (CD45.2 <em>Csf2rb</em><sup>-/-</sup>: CD45.1 <em>Csf2rb</em><sup>+/+</sup> and CD45.2 <em>Ifngr1<sup>-/-</sup></em>: CD45.1 <em>Ifngr1<sup>+/+</sup></em>) using 10X Genomics platform.</strong> The sorted cells were loaded into 10x Genomics Chromium in parallel. Libraries were prepared as per the manufacturer's protocol (Chromium Next GEM Single Cell 3ʹ Reagent Kits v3.1 protocol) and sequenced on an Illumina NovaSeq sequencer according to 10X Genomics recommendations (paired-end reads, R1=28, i7=8, R2=91) to a depth of around 50,000 reads per cell. Initial processing was done using Cell Ranger (v3.1.0) mkfastq and count (reads were aligned to GENCODE reference build GRCm38.p6 Release M23 with added tdTomato sequence for the dataset from <em>Ms4a3</em><sup>Ai14</sup> mouse and collapse UMIs). Starting from the filtered gene-cell count matrix produced by CellRranger's in-built cell calling algorithms, we proceeded with Seurat v4 workflow.
DOI: 10.5281/zenodo.5722169
title: Single-cell RNA sequencing of CNS-infiltrating HSC-derived phagocytes of Ms4a3Ai14, BM chimeric mice (CD45.2 Csf2rb-/-: CD45.1 Csf2rb+/+ and CD45.2 Ifngr1-/-: CD45.1 Ifngr1+/+) using 10X Genomics platform. IFN-γ and GM-CSF control complementary differentiation programs in the monocyte to phagocyte transition during neuroinflammation.

description: <strong>Single-cell RNA sequencing of CNS-infiltrating HSC-derived phagocytes of <em>Ms4a3</em><sup>Ai14</sup> at onset and peak EAE, BM chimeric mice (CD45.2 <em>Csf2rb</em><sup>-/-</sup>: CD45.1 <em>Csf2rb</em><sup>+/+</sup> and CD45.2 <em>Ifngr1<sup>-/-</sup></em>: CD45.1 <em>Ifngr1<sup>+/+</sup></em>) using 10X Genomics platform.</strong> The sorted cells were loaded into 10x Genomics Chromium in parallel. Libraries were prepared as per the manufacturer's protocol (Chromium Next GEM Single Cell 3ʹ Reagent Kits v3.1 protocol) and sequenced on an Illumina NovaSeq sequencer according to 10X Genomics recommendations (paired-end reads, R1=28, i7=8, R2=91) to a depth of around 50,000 reads per cell. Initial processing was done using Cell Ranger (v3.1.0) mkfastq and count (reads were aligned to GENCODE reference build GRCm38.p6 Release M23 with added tdTomato sequence for the dataset from <em>Ms4a3</em><sup>Ai14</sup> mouse and collapse UMIs). Starting from the filtered gene-cell count matrix produced by CellRranger's in-built cell calling algorithms, we proceeded with Seurat v4 workflow.
DOI: 10.6084/m9.figshare.17088902
title: Production History Rate.csv

description: This data consist of Production History Data, such as Water Production, Oil Production, Gas Production.
DOI: 10.5281/zenodo.5722172
title: Single-cell RNA sequencing of Lymph node-infiltrating HSC-derived phagocytes of Ms4a3Ai14 using 10X Genomics platform. IFN-γ and GM-CSF control complementary differentiation programs in the monocyte to phagocyte transition during neuroinflammation.

description: <strong>Single-cell RNA sequencing of Lymph node-infiltrating HSC-derived phagocytes of <em>Ms4a3</em><sup>Ai14</sup> at onset and peak EAE using 10X Genomics platform.</strong> The sorted cells were loaded into 10x Genomics Chromium in parallel. Libraries were prepared as per the manufacturer's protocol (Chromium Next GEM Single Cell 3ʹ Reagent Kits v3.1 protocol) and sequenced on an Illumina NovaSeq sequencer according to 10X Genomics recommendations (paired-end reads, R1=28, i7=8, R2=91) to a depth of around 50,000 reads per cell. Initial processing was done using Cell Ranger (v3.1.0) mkfastq and count (reads were aligned to GENCODE reference build GRCm38.p6 Release M23 with added tdTomato sequence for the dataset from <em>Ms4a3</em><sup>Ai14</sup> mouse and collapse UMIs). Starting from the filtered gene-cell count matrix produced by CellRranger's in-built cell calling algorithms, we proceeded with Seurat v4 workflow.
DOI: 10.5281/zenodo.5722171
title: Single-cell RNA sequencing of Lymph node-infiltrating HSC-derived phagocytes of Ms4a3Ai14 using 10X Genomics platform. IFN-γ and GM-CSF control complementary differentiation programs in the monocyte to phagocyte transition during neuroinflammation.

description: <strong>Single-cell RNA sequencing of Lymph node-infiltrating HSC-derived phagocytes of <em>Ms4a3</em><sup>Ai14</sup> at onset and peak EAE using 10X Genomics platform.</strong> The sorted cells were loaded into 10x Genomics Chromium in parallel. Libraries were prepared as per the manufacturer's protocol (Chromium Next GEM Single Cell 3ʹ Reagent Kits v3.1 protocol) and sequenced on an Illumina NovaSeq sequencer according to 10X Genomics recommendations (paired-end reads, R1=28, i7=8, R2=91) to a depth of around 50,000 reads per cell. Initial processing was done using Cell Ranger (v3.1.0) mkfastq and count (reads were aligned to GENCODE reference build GRCm38.p6 Release M23 with added tdTomato sequence for the dataset from <em>Ms4a3</em><sup>Ai14</sup> mouse and collapse UMIs). Starting from the filtered gene-cell count matrix produced by CellRranger's in-built cell calling algorithms, we proceeded with Seurat v4 workflow.
DOI: 10.5281/zenodo.5711708
title: Single-cell RNA sequencing of Bone Marrow-infiltrating HSC-derived phagocytes of Ms4a3Ai14 using 10X Genomics platform. IFN-γ and GM-CSF control complementary differentiation programs in the monocyte to phagocyte transition during neuroinflammation.

description: <strong>Single-cell RNA sequencing of Bone Marrow-infiltrating HSC-derived phagocytes of <em>Ms4a3</em><sup>Ai14</sup> at onset and peak EAE using 10X Genomics platform.</strong> The sorted cells were loaded into 10x Genomics Chromium in parallel. Libraries were prepared as per the manufacturer's protocol (Chromium Next GEM Single Cell 3ʹ Reagent Kits v3.1 protocol) and sequenced on an Illumina NovaSeq sequencer according to 10X Genomics recommendations (paired-end reads, R1=28, i7=8, R2=91) to a depth of around 50,000 reads per cell. Initial processing was done using Cell Ranger (v3.1.0) mkfastq and count (reads were aligned to GENCODE reference build GRCm38.p6 Release M23 with added tdTomato sequence for the dataset from <em>Ms4a3</em><sup>Ai14</sup> mouse and collapse UMIs). Starting from the filtered gene-cell count matrix produced by CellRranger's in-built cell calling algorithms, we proceeded with Seurat v4 workflow.
DOI: 10.5281/zenodo.5711707
title: Single-cell RNA sequencing of Bone Marrow-infiltrating HSC-derived phagocytes of Ms4a3Ai14 using 10X Genomics platform. IFN-γ and GM-CSF control complementary differentiation programs in the monocyte to phagocyte transition during neuroinflammation.

description: <strong>Single-cell RNA sequencing of Bone Marrow-infiltrating HSC-derived phagocytes of <em>Ms4a3</em><sup>Ai14</sup> at onset and peak EAE using 10X Genomics platform.</strong> The sorted cells were loaded into 10x Genomics Chromium in parallel. Libraries were prepared as per the manufacturer's protocol (Chromium Next GEM Single Cell 3ʹ Reagent Kits v3.1 protocol) and sequenced on an Illumina NovaSeq sequencer according to 10X Genomics recommendations (paired-end reads, R1=28, i7=8, R2=91) to a depth of around 50,000 reads per cell. Initial processing was done using Cell Ranger (v3.1.0) mkfastq and count (reads were aligned to GENCODE reference build GRCm38.p6 Release M23 with added tdTomato sequence for the dataset from <em>Ms4a3</em><sup>Ai14</sup> mouse and collapse UMIs). Starting from the filtered gene-cell count matrix produced by CellRranger's in-built cell calling algorithms, we proceeded with Seurat v4 workflow.
DOI: 10.34740/kaggle/dsv/2862796
title: Covid-19 in Singapore : Latest Detailed Data
DOI: 10.34740/kaggle/dsv/2862802
title: Covid-19 in Singapore : Latest Detailed Data
DOI: 10.34740/kaggle/dsv/2862807
title: Covid-19 in Singapore : Latest Detailed Data
DOI: 10.5281/zenodo.5569220
title: Geometry-based preliminary quantification of landslide-induced impulse wave attenuation in mountain lakes

description: Excel sheet comprising of two tables: - Collected alpine lakes and related data - Recreated artificial lakes and related data Solid bodies in STL format for all artificial lakes
DOI: 10.5281/zenodo.5148025
title: Geometry-based preliminary quantification of landslide-induced impulse wave attenuation in mountain lakes

description: Excel sheet comprising of two tables: - Collected alpine lakes and related data - Recreated artificial lakes and related data Solid bodies in STL format for all artificial lakes
DOI: 10.6084/m9.figshare.14489157
title: Protein sequences of gene families from Watson et al, including OFR and inframe composite genes

description: Sequences of genes from Watson et al 2021.
DOI: 10.6084/m9.figshare.14489157.v1
title: Protein sequences of gene families from Watson et al, including OFR and inframe composite genes

description: Sequences of genes from Watson et al 2021.
DOI: 10.6084/m9.figshare.14485260
title: Predicted coding sequences from E. coli genomes sampled in Watson et al.

description: The predicted open reading frames of genes in all E. coli genomes included in this study.
DOI: 10.6084/m9.figshare.14485260.v1
title: Predicted coding sequences from E. coli genomes sampled in Watson et al.

description: The predicted open reading frames of genes in all E. coli genomes included in this study.
DOI: 10.5517/ccdc.csd.cc271jf8
title: CCDC 2057049: Experimental Crystal Structure Determination

description: Related Article: Joseph A. Zurakowski, Brady J. H. Austen, Maeve C. Dufour, Denis M. Spasyuk, David J. Nelson, Marcus W. Drover|2021|Chem.-Eur.J.|27|16021|doi:10.1002/chem.202103121
DOI: 10.5517/ccdc.csd.cc27lt0p
title: CCDC 2073652: Experimental Crystal Structure Determination

description: Related Article: Jiang Peng|2021|CSD Communication|||
description: Related Article: Jiang Peng, Jiakun Bai, Xiumian Cao, Jieting He, Weiqing Xu, Junhui Jia|2021|Chem.-Eur.J.|27|16036|doi:10.1002/chem.202103286
DOI: 10.5517/ccdc.csd.cc28bw6q
title: CCDC 2095823: Experimental Crystal Structure Determination

description: Related Article: Luis M. Mateo, Luca Sagresti, Yusen Luo, Dirk M. Guldi, Tomas Torres, Giuseppe Brancato, Giovanni Bottari|2021|Chem.-Eur.J.|27|16049|doi:10.1002/chem.202103079
DOI: 10.5281/zenodo.5733082
title: Ceyx lecontei decontaminated FSCR

description: .
DOI: 10.5281/zenodo.5733081
title: Ceyx lecontei decontaminated FSCR

description: .
DOI: 10.6084/m9.figshare.17088911
title: A Bayesian Approach to Historical Climatology for the Burgundian Low Countries in the 15th Century

description: This dataset includes the climate reconstructions of the manuscript: A Bayesian Approach to Historical Climatology for the Burgundian Low Countries in the 15th Century.<br>It also includes the probability and likelihood distributions of the priors (CESM-LME and HIPPO GCMs), observations (historical texts), and their respective posteriors.
DOI: 10.6084/m9.figshare.17088923.v1
title: Untitled Item

description: This data has been used for the preparation of the manuscript: 'How did the US and UK markets react to the COVID-19 vaccines’ announcements? A preliminary assessment'
DOI: 10.5281/zenodo.5733126
title: Public attitudes to a human challenge study with SARS-CoV-2: a mixed-methods study

description: Human challenge studies involve the deliberate exposure of healthy volunteers to an infectious micro-organism in a highly controlled and monitored way. They are used to understand infectious diseases and have contributed to the development of vaccines. In early 2020, the UK started exploring the feasibility of establishing a human challenge study with SARS-CoV-2. Given the significant public interest and the complexity of the potential risks and benefits, it is vital that public views are considered in the design and approval of any such study and that investigators and ethics boards remain accountable to the public. We conducted a mixed methods study comprising online surveys conducted with 2,441 UK adults and in-depth virtual focus groups with 57 UK adults during October 2020 to explore the public’s attitudes to a human challenge study with SARS-CoV-2 taking place in the UK. This depositary includes: Documentation relating to the online surveys; Survey Animation that survey participants were asked to view Survey wrappers (invitations, participant information sheet and consent, end of survey messages) Survey data (demographic information not included) Documentation relating to focus groups: Participant Information Sheet Focus Group Discussion guide
DOI: 10.5281/zenodo.5733071
title: Public attitudes to a human challenge study with SARS-CoV-2: a mixed-methods study

description: Human challenge studies involve the deliberate exposure of healthy volunteers to an infectious micro-organism in a highly controlled and monitored way. They are used to understand infectious diseases and have contributed to the development of vaccines. In early 2020, the UK started exploring the feasibility of establishing a human challenge study with SARS-CoV-2. Given the significant public interest and the complexity of the potential risks and benefits, it is vital that public views are considered in the design and approval of any such study and that investigators and ethics boards remain accountable to the public. We conducted a mixed methods study comprising online surveys conducted with 2,441 UK adults and in-depth virtual focus groups with 57 UK adults during October 2020 to explore the public’s attitudes to a human challenge study with SARS-CoV-2 taking place in the UK. This depositary includes: Documentation relating to the online surveys; Survey Animation that survey participants were asked to view Survey wrappers (invitations, participant information sheet and consent, end of survey messages) Survey data (demographic information not included) Documentation relating to focus groups: Participant Information Sheet Focus Group Discussion guide
DOI: 10.6084/m9.figshare.17088923
title: Dataset

description: This data has been used for the preparation of the manuscript: 'How did the US and UK markets react to the COVID-19 vaccines’ announcements? A preliminary assessment'
DOI: 10.6084/m9.figshare.17088923.v3
title: Dataset

description: This data has been used for the preparation of the manuscript: 'How did the US and UK markets react to the COVID-19 vaccines’ announcements? A preliminary assessment'
DOI: 10.6084/m9.figshare.17088923.v2
title: Dataset

description: This data has been used for the preparation of the manuscript: 'How did the US and UK markets react to the COVID-19 vaccines’ announcements? A preliminary assessment'
DOI: 10.5281/zenodo.5733125
title: Gallinago media decontaminated FSCR

description: .
DOI: 10.5281/zenodo.5733124
title: Gallinago media decontaminated FSCR

description: .
DOI: 10.15468/7xujn5
title: Description of a new species of Southeast Asian reed snake from northern Laos (Squamata: Colubridae: Genus Calamaria F. Boie, 1827) with a revised diagnosis of Calamaria yunnanensis Chernov, 1962

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lee, Justin L. (2021): Description of a new species of Southeast Asian reed snake from northern Laos (Squamata: Colubridae: Genus Calamaria F. Boie, 1827) with a revised diagnosis of Calamaria yunnanensis Chernov, 1962. Journal of Natural History 55 (9 - 10): 531-560, DOI: 10.1080/00222933.2021.1909165, URL: http://dx.doi.org/10.1080/00222933.2021.1909165
DOI: 10.6084/m9.figshare.17088950
title: Data from: A mesocosm experiment in ecological physiology: The modulation of energy budget in a hibernating marsupial under chronic caloric restriction

description: Data from: Nespolo, R.F., F.E. Fontúrbel, C. Mejias, R. Contreras, P. Gutierrez, E. Oda, P. Sabat, C. Hambly, J.R. Speakman and F. Bozinovic. A mesocosm experiment in ecological physiology: The modulation of energy budget in a hibernating marsupial under chronic caloric restriction. Physiological and Biochemical Zoology. doi: 10.1086/717760<br>This repository contains an Excel spreadsheet with the original data used to produce each figure and sub-figure within the paper.<br>Please cite this repository along with the original paper when re-using this data.<br>This information is freely provided under a Creative Commons CY-BY-SA-NC license.
DOI: 10.6084/m9.figshare.17088950.v1
title: Data from: A mesocosm experiment in ecological physiology: The modulation of energy budget in a hibernating marsupial under chronic caloric restriction

description: Data from: Nespolo, R.F., F.E. Fontúrbel, C. Mejias, R. Contreras, P. Gutierrez, E. Oda, P. Sabat, C. Hambly, J.R. Speakman and F. Bozinovic. A mesocosm experiment in ecological physiology: The modulation of energy budget in a hibernating marsupial under chronic caloric restriction. Physiological and Biochemical Zoology. doi: 10.1086/717760<br>This repository contains an Excel spreadsheet with the original data used to produce each figure and sub-figure within the paper.<br>Please cite this repository along with the original paper when re-using this data.<br>This information is freely provided under a Creative Commons CY-BY-SA-NC license.
DOI: 10.5281/zenodo.5596206
title: Standaardlijst van de Nederlandse Flora 2020

description: Checklist of the native and naturalized vascular flora of the Netherlands.
description: translated in English
description: {"references": ["Duistermaat H., Sparrius L.B., Denters T. 2021. Standaardlijst van de Nederlandse Flora 2020. Gorteria"]}