DOI: 10.5281/zenodo.17886791
title: Data and code for: Passive acoustic monitoring reveals the limited distribution of an indicator species, the White-headed woodpecker (Picoides albolarvatus), in the northern Blue Mountains

description: Data and code for recreating analyses presented in Passive acoustic monitoring reveals the limited distribution of an indicator species, the White-headed woodpecker (Picoides albolarvatus), in the norhtern Blue Mountains

File: WHWO_Station_HSI_Analysis_071725.csv

Description: Data used to compare habitat suitability values between occupied and unoccupied stations.

Variables





station: categorical variable denoting the location audio recordings were collected.




hsi: the habitat suitability for a given station, calculated by averaging the habitat suitability values of a 200m radius, circular buffer centered on each station.




whwo_state: binary variable denoting if the station was consider occupied or unoccupied.




hexagon: categorical variable denoting the hexagon identifier.



File: whwo_occupancy_analysis_102325.R

Description: R script used to fit and summarize a Bayesian occupancy model

File: whwo_HSI_analysis_071725.R

Description: R script used to compare habitat suitability at occupied and unoccupied stations and hexagons.

File: WHWO_Hexagon_HSI_Analysis_071725.csv

Description: Data used to compare habitat suitability values between occupied and unoccupied hexagons

Variables





hexagon: categorical identifier denoting the hexagon ID




whwo_state: binary variable denoting if the station was consider occupied or unoccupied.




hsi: the habitat suitability for a given hexagon, calculated by averaging the habitat suitability values contained with the 500 hectare hexagon.



File: whwo_ssp_occ_data.csv

Description: WHWO occupancy data

Variables





year: year station was surveyed (2022 or 2023).




station: categorical variable denoting the station ID




week: numerical value indicating survey period




total_monitoring_time: total time of audio recordings collected at a given station




min_date: first day of the survey period




whwo_state: binary variable denoting if the station was consider occupied or unoccupied.



Code/software

R version 4.2.0 (2022-04-22)

Platform: x86_64-apple-darwin17.0 (64-bit)

Running under: macOS Monterey 12.3.1

Matrix products: default

LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib

locale:

[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:

[1] stats graphics grDevices utils datasets methods base

other attached packages:

[1] cowplot_1.1.3 performance_0.11.0 lmerTest_3.1-3 lme4_1.1-29 Matrix_1.4-1 ggplot2_3.5.1

[7] tidyr_1.3.1 dplyr_1.1.4 reshape2_1.4.4 jagsUI_1.6.2 R2jags_0.8-9 rjags_4-16

[13] coda_0.19-4.1

loaded via a namespace (and not attached):

[1] tidyselect_1.2.1 purrr_1.0.2 splines_4.2.0 lattice_0.22-6 colorspace_2.1-0

[6] vctrs_0.6.5 generics_0.1.3 mgcv_1.9-1 utf8_1.2.4 rlang_1.1.3

[11] pillar_1.9.0 nloptr_2.0.3 glue_1.7.0 withr_3.0.0 lifecycle_1.0.4

[16] plyr_1.8.9 stringr_1.5.1 munsell_0.5.1 gtable_0.3.5 bayestestR_0.13.2

[21] labeling_0.4.3 datawizard_0.10.0 parallel_4.2.0 fansi_1.0.6 Rcpp_1.0.12

[26] scales_1.3.0 see_0.8.4 abind_1.4-5 farver_2.1.1 stringi_1.8.4

[31] insight_0.19.10 numDeriv_2016.8-1.1 grid_4.2.0 cli_3.6.2 tools_4.2.0

[36] magrittr_2.0.3 patchwork_1.2.0 tibble_3.2.1 pkgconfig_2.0.3 MASS_7.3-60

[41] minqa_1.2.6 rstudioapi_0.16.0 R6_2.5.1 boot_1.3-30 R2WinBUGS_2.1-22.1

[46] nlme_3.1-164 compiler_4.2.0