cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gzbwh8
title: Occurrence Download

description: A dataset containing 14026 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Issue is one of (Zero coordinate, Coordinate out of range, Coordinate invalid, Coordinate rounded, Geodetic datum invalid, Geodetic datum assumed WGS84, Coordinate reprojected, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate accuracy invalid, Coordinate precision invalid, Coordinate uncertainty meters invalid, Coordinate precision/uncertainty mismatch, Footprint SRS invalid, Footprint WKT mismatch, Footprint WKT invalid, Country coordinate mismatch, Country mismatch, Country invalid, Country derived from coordinates, Continent coordinate mismatch, Continent country mismatch, Continent invalid, Continent derived from country, Continent derived from coordinates, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Recorded date mismatch, Recorded date invalid, Recorded date unlikely, Taxon match fuzzy, Taxon match higher rank, Taxon match aggregate, The scientific name ID was not used in backbone matching, The taxon concept ID was not used in backbone matching, The taxon ID was not used in backbone matching, The scientific name ID was not found in the checklist, The taxon concept ID was not found in the checklist, The taxon ID was not found in the checklist, The scientific name differs on the record from that found in the checklist, Taxon match none, The backbone match found using the taxon IDs differs from what would be found if using the scientific names , Depth not metric, Depth unlikely, Depth min max swapped, Depth non numeric, Elevation unlikely, Elevation min max swapped, Elevation not metric, Elevation non numeric, Modified date invalid, Modified date unlikely, Identified date unlikely, Identified date invalid, Basis of record invalid, Type status invalid, Multimedia date invalid, Multimedia URI invalid, References URI invalid, Error during interpretation, Individual count invalid, Individual count conflicts with occurrence status, Occurrence status unparsable, Occurrence status inferred from individual count, ccurrence status inferred from basis of record, Georeferenced date unlikely, Georeferenced date invalid, Ambiguous institution, Ambiguous collection, Institution match none, Collection match none, Institution match fuzzy, Collection match fuzzy, Institution collection mismatch, Possibly on loan, Different owner institution)",
 "OccurrenceStatus is Present",
 "TaxonKey is Arremon flavirostris Swainson, 1838"
 ]
}

 The dataset includes 14026 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0110966-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3pd8d9
title: Occurrence Download

description: A dataset containing 37235 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stenella coeruleoalba (Meyen, 1833)"
 ]
}

 The dataset includes 37235 records from 378 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0110967-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.9877685.v1
title: Additional file 4 of A novel protein descriptor for the prediction of drug binding sites

description: Protein list for the experiment on PDBbind. This file contains randomly selected proteins for the experiment on PDBbind. A total of 5000 proteins were used including 3000 proteins from the sc-PDB database constitute the training set, 1000 proteins from the sc-PDB database constitute the validation set, 1000 proteins from the PDBbind database constitute the test set. All proteins are randomly selected, and the three sets of proteins do not intercept. (CSV 79.1 kb)
DOI: 10.6084/m9.figshare.13023410.v1
title: Additional file 9 of Integrated metabolic profiling and transcriptome analysis of pigment accumulation in diverse petal tissues in the lily cultivar ‘Vivian’

description: Additional file 9: Table S2. Statistics of RNA-Seq data.
DOI: 10.6084/m9.figshare.7780643.v1
title: A Spatio-Temporal Modeling Framework for Surveillance Data of Multiple Infectious Pathogens with Small Laboratory Validation Sets

description: Many surveillance systems of infectious diseases are syndrome-based, capturing patients by clinical manifestation. Only a fraction of patients, mostly severe cases, undergo laboratory validation to identify the underlying pathogen. Motivated by the need to understand transmission dynamics and associate risk factors of enteroviruses causing the hand, foot and mouth disease (HFMD) in China, we developed a Bayesian spatio-temporal modeling framework for surveillance data of infectious diseases with small validation sets. A novel approach was proposed to sample unobserved pathogen-specific patient counts over space and time and was compared to an existing sampling approach. The practical utility of this framework in identifying key parameters was assessed in simulations for a range of realistic sizes of the validation set. Several designs of sampling patients for laboratory validation were compared with and without aggregation of sparse validation data. The methodology was applied to the 2009 HFMD epidemic in southern China to evaluate transmissibility and the effects of climatic conditions for the leading pathogens of the disease, enterovirus 71 and Coxsackie A16.
DOI: 10.6084/m9.figshare.7780643.v2
title: A Spatio-Temporal Modeling Framework for Surveillance Data of Multiple Infectious Pathogens With Small Laboratory Validation Sets

description: Many surveillance systems of infectious diseases are syndrome-based, capturing patients by clinical manifestation. Only a fraction of patients, mostly severe cases, undergo laboratory validation to identify the underlying pathogen. Motivated by the need to understand transmission dynamics and associate risk factors of enteroviruses causing the hand, foot, and mouth disease (HFMD) in China, we developed a Bayesian spatio-temporal modeling framework for surveillance data of infectious diseases with small validation sets. A novel approach was proposed to sample unobserved pathogen-specific patient counts over space and time and was compared to an existing sampling approach. The practical utility of this framework in identifying key parameters was assessed in simulations for a range of realistic sizes of the validation set. Several designs of sampling patients for laboratory validation were compared with and without aggregation of sparse validation data. The methodology was applied to the 2009 HFMD epidemic in southern China to evaluate transmissibility and the effects of climatic conditions for the leading pathogens of the disease, enterovirus 71, and Coxsackie A16. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.7780643.v3
title: A Spatio-Temporal Modeling Framework for Surveillance Data of Multiple Infectious Pathogens With Small Laboratory Validation Sets

description: Many surveillance systems of infectious diseases are syndrome-based, capturing patients by clinical manifestation. Only a fraction of patients, mostly severe cases, undergo laboratory validation to identify the underlying pathogen. Motivated by the need to understand transmission dynamics and associate risk factors of enteroviruses causing the hand, foot, and mouth disease (HFMD) in China, we developed a Bayesian spatio-temporal modeling framework for surveillance data of infectious diseases with small validation sets. A novel approach was proposed to sample unobserved pathogen-specific patient counts over space and time and was compared to an existing sampling approach. The practical utility of this framework in identifying key parameters was assessed in simulations for a range of realistic sizes of the validation set. Several designs of sampling patients for laboratory validation were compared with and without aggregation of sparse validation data. The methodology was applied to the 2009 HFMD epidemic in southern China to evaluate transmissibility and the effects of climatic conditions for the leading pathogens of the disease, enterovirus 71, and Coxsackie A16. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.20363560.v1
title: Additional file 1 of Effects of planting of two common crops, Allium fistulosum and Brassica napus, on soil properties and microbial communities of ginseng cultivation in northeast China

description: Additional file 1: Figure S1. Analysis of differences in bacterial phylum levels. *: P &lt; 0.05; **: P &lt; 0.01. Figure S2. Analysis of differences in fungal phylum levels. *: P &lt; 0.05; **: P &lt; 0.01. Figure S3. The biomarker with LDA scores in bacterial communities associated with each treated soil from the three groups. Figure S4. The biomarker with LDA scores in fungi communities associated with each treated soil from the three groups. Figure S5. The fungal functional guilds with significant differences among the three groups. Table S1. Component extracted matrix of db-RDA for soil bacteria community. Table S2. Component extracted matrix of db-RDA for soil fungal community. Table S3. Bacterial function prediction of ginseng cultivation soil in different groups (hierarchy level 2).
DOI: 10.6084/m9.figshare.20363560
title: Additional file 1 of Effects of planting of two common crops, Allium fistulosum and Brassica napus, on soil properties and microbial communities of ginseng cultivation in northeast China

description: Additional file 1: Figure S1. Analysis of differences in bacterial phylum levels. *: P &lt; 0.05; **: P &lt; 0.01. Figure S2. Analysis of differences in fungal phylum levels. *: P &lt; 0.05; **: P &lt; 0.01. Figure S3. The biomarker with LDA scores in bacterial communities associated with each treated soil from the three groups. Figure S4. The biomarker with LDA scores in fungi communities associated with each treated soil from the three groups. Figure S5. The fungal functional guilds with significant differences among the three groups. Table S1. Component extracted matrix of db-RDA for soil bacteria community. Table S2. Component extracted matrix of db-RDA for soil fungal community. Table S3. Bacterial function prediction of ginseng cultivation soil in different groups (hierarchy level 2).
DOI: 10.5281/zenodo.10442390
title: RSoANU:  RIR Dataset

description: RSoANU is a dataset of real multichannel Room Impulse Responses (RIRs) captured in a recording studio at the Australian National University (ANU). The dataset features RIRs captured using both a 32-channel spherical microphone array (MH Acoustics em32 Eigenmike) and a B-format soundfield microphone array (Rode NT-SF1), encompassing two distinct wall panel environments of the room with three source positions and a planar receiver grid.
DOI: 10.6084/m9.figshare.7780703
title: The Effectiveness of Pharmacological Agents for the Treatment of Uveitic Macular Edema (UMO): A Systematic Review

description: <i>Purpose</i>: To conduct a systematic review of effectiveness of pharmacological therapies for treatment of Uveitic Macular Edema (UMO). <i>Method/Design</i>: Comparative studies of pharmacological therapies in patients with UMO were identified in Cochrane CENTRAL/MEDLINE/EMBASE/CINAHL/trials registers (February 2017). PROSPERO registration: CRD42015019170. <i>Results</i>: Thirty-one studies were included. Corticosteroids were the most frequently studied (<i>n</i> = 20). Corticosteroids (all forms) were consistently of greater/equal efficacy to active comparators; for anti-VEGF (<i>n</i> = 4) improvement, best-corrected visual acuity (BCVA) and central macular thickness (CMT) were mostly less than local corticosteroid injection; for interferon (<i>n</i> = 1) improvement BCVA and CMT were greater than the comparator of methotrexate; for topical indomethacin (<i>n</i> = 1) improvement, BCVA and CMT were greater than placebo. Non-steroidal anti-inflammatory drugs, carbonic anhydrase inhibitors, and vitamin E (<i>n</i> = 5) were not effective for these outcomes. <i>Conclusion</i>: The review highlights areas where the evidence base is still lacking, and appropriately focused trials are needed to inform best treatment to tackle this sight-threatening condition.
DOI: 10.6084/m9.figshare.7780703.v1
title: The Effectiveness of Pharmacological Agents for the Treatment of Uveitic Macular Edema (UMO): A Systematic Review

description: <i>Purpose</i>: To conduct a systematic review of effectiveness of pharmacological therapies for treatment of Uveitic Macular Edema (UMO). <i>Method/Design</i>: Comparative studies of pharmacological therapies in patients with UMO were identified in Cochrane CENTRAL/MEDLINE/EMBASE/CINAHL/trials registers (February 2017). PROSPERO registration: CRD42015019170. <i>Results</i>: Thirty-one studies were included. Corticosteroids were the most frequently studied (<i>n</i> = 20). Corticosteroids (all forms) were consistently of greater/equal efficacy to active comparators; for anti-VEGF (<i>n</i> = 4) improvement, best-corrected visual acuity (BCVA) and central macular thickness (CMT) were mostly less than local corticosteroid injection; for interferon (<i>n</i> = 1) improvement BCVA and CMT were greater than the comparator of methotrexate; for topical indomethacin (<i>n</i> = 1) improvement, BCVA and CMT were greater than placebo. Non-steroidal anti-inflammatory drugs, carbonic anhydrase inhibitors, and vitamin E (<i>n</i> = 5) were not effective for these outcomes. <i>Conclusion</i>: The review highlights areas where the evidence base is still lacking, and appropriately focused trials are needed to inform best treatment to tackle this sight-threatening condition.
DOI: 10.6084/m9.figshare.25303444
title: Supplementary Material for: Colorimetric CO2 Detector to Improve Effective Mask Ventilations in Very Preterm Infants: A Pilot Randomized Controlled Study

description: Introduction: End tidal CO2 (ETCO2) detector is currently recommended for confirmation of endotracheal tube placement during neonatal resuscitation. Whether it is feasible to use ETCO2 detectors during mask ventilation to reduce risk of bradycardia and desaturations, which are associated with increased risk of death in preterm babies, is unknown.
Methods : This is a pilot randomized controlled trial ((NCT04287907) involving newborns 24+0/7 to 32+0/7 weeks gestation who required mask ventilation at birth. Infants were randomized into groups with or without colorimetric ETCO2 detectors. Combined duration of any bradycardia (&lt;100bpm) and time below prespecified target oxygen saturations (SpO2) as measured by pulse oximetry were compared.
Results : Fifty participants were randomized, 47 with outcomes analysed (2 incomplete data, 1 postnatal diagnosis of trachea-esophageal fistula). Mean gestational age and birthweight were 28.5±1.9 vs 29.4±1.6 weeks, (p=0.1) and 1252.7±409.7g vs 1334.6±369.1g, (p=0.5) in the intervention and control arm respectively. Mean combined duration of bradycardia and desaturation was 276.7±197.7s (intervention) and 322.7±277.7s (control),(p=0.6). Proportion of participants with any bradycardia or desaturation at 5 minutes were 38.1% (intervention) and 56.5% (control), (p=0.2). No chest compressions, epinephrine administration or death occurred in the delivery room.
Conclusion: This pilot study demonstrates that the feasibility of a trial to evaluate colorimetric ETCO2 detectors during mask ventilation of very preterm infants to reduce bradycardia and low SpO2. Further assessment with a larger population will be required to determine if ETCO2 detectors usage at resuscitation reduces risk of adverse outcomes, including death and disability, in very preterm infants.
DOI: 10.6084/m9.figshare.25303444.v1
title: Supplementary Material for: Colorimetric CO2 Detector to Improve Effective Mask Ventilations in Very Preterm Infants: A Pilot Randomized Controlled Study

description: Introduction: End tidal CO2 (ETCO2) detector is currently recommended for confirmation of endotracheal tube placement during neonatal resuscitation. Whether it is feasible to use ETCO2 detectors during mask ventilation to reduce risk of bradycardia and desaturations, which are associated with increased risk of death in preterm babies, is unknown.
Methods : This is a pilot randomized controlled trial ((NCT04287907) involving newborns 24+0/7 to 32+0/7 weeks gestation who required mask ventilation at birth. Infants were randomized into groups with or without colorimetric ETCO2 detectors. Combined duration of any bradycardia (&lt;100bpm) and time below prespecified target oxygen saturations (SpO2) as measured by pulse oximetry were compared.
Results : Fifty participants were randomized, 47 with outcomes analysed (2 incomplete data, 1 postnatal diagnosis of trachea-esophageal fistula). Mean gestational age and birthweight were 28.5±1.9 vs 29.4±1.6 weeks, (p=0.1) and 1252.7±409.7g vs 1334.6±369.1g, (p=0.5) in the intervention and control arm respectively. Mean combined duration of bradycardia and desaturation was 276.7±197.7s (intervention) and 322.7±277.7s (control),(p=0.6). Proportion of participants with any bradycardia or desaturation at 5 minutes were 38.1% (intervention) and 56.5% (control), (p=0.2). No chest compressions, epinephrine administration or death occurred in the delivery room.
Conclusion: This pilot study demonstrates that the feasibility of a trial to evaluate colorimetric ETCO2 detectors during mask ventilation of very preterm infants to reduce bradycardia and low SpO2. Further assessment with a larger population will be required to determine if ETCO2 detectors usage at resuscitation reduces risk of adverse outcomes, including death and disability, in very preterm infants.
DOI: 10.6084/m9.figshare.8305019
title: Additional file 13: of Efficient identification of neoantigen-specific T-cell responses in advanced human ovarian cancer

description: Table S2. Somatic point mutations identified from whole-exome sequencing. (a) The 18 patients with either primary tumor or locally invasive tumor; (b) The 2 patients with both primary tumor and locally invasive tumor. AA, amino acid; CGC, cancer gene census; VAF, variant allele frequency. (XLSX 244 kb)
DOI: 10.6084/m9.figshare.8305019.v1
title: Additional file 13: of Efficient identification of neoantigen-specific T-cell responses in advanced human ovarian cancer

description: Table S2. Somatic point mutations identified from whole-exome sequencing. (a) The 18 patients with either primary tumor or locally invasive tumor; (b) The 2 patients with both primary tumor and locally invasive tumor. AA, amino acid; CGC, cancer gene census; VAF, variant allele frequency. (XLSX 244 kb)
DOI: 10.6084/m9.figshare.8305043
title: Additional file 16: of Efficient identification of neoantigen-specific T-cell responses in advanced human ovarian cancer

description: Table S5. The list of 31 genes within the derived APPM signature (see Method section). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8305043.v1
title: Additional file 16: of Efficient identification of neoantigen-specific T-cell responses in advanced human ovarian cancer

description: Table S5. The list of 31 genes within the derived APPM signature (see Method section). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8305094
title: Additional file 2: of Dynamic DNA methylation of ovaries during pubertal transition in gilts

description: The summary count tables of RRBS data and genomic coordinates of DMCs and DMRs. (XLSX 2891 kb)
DOI: 10.6084/m9.figshare.8305094.v1
title: Additional file 2: of Dynamic DNA methylation of ovaries during pubertal transition in gilts

description: The summary count tables of RRBS data and genomic coordinates of DMCs and DMRs. (XLSX 2891 kb)
DOI: 10.6084/m9.figshare.25303501
title: data from The mechanical properties of different cross-veins in the hind wing of locust <i>Locusta migratoria</i> under uniaxial tensile and stress relaxation tests

description: Locust <i>Locusta migratoria</i> exhibits remarkable aerial performances, relying predominantly on its hind wings that generate most of lift and thrust for flight. The mechanical properties of the cross-veins determine the deformation of the hind wing, which greatly affect the aerodynamic performance of flapping flight. However, whether the mechanical behaviours of the locust cross-veins change with loading rate is still unknown. In this study, cross-veins in four physiological regions (anterior–medial, anterior–lateral, posterior–medial and posterior–lateral) of the hind wing from adult locusts were investigated using uniaxial tensile test, stress relaxation test and fluorescence microscopy. It was found that the cross-veins were a type of viscoelastic material (including rate-independent elastic modulus and obvious stress relaxation). The cross-veins in the two anterior regions of the hind wing had significantly higher elastic moduli and higher ultimate tensile stress than those of its two posterior regions. This difference might be attributed to different resilin distributed patterns in the cross-veins. These findings furnish new insights into the mechanical characteristics of the locust cross-veins, which might deepen our understanding of the aerodynamic mechanisms of locust flapping flight.
DOI: 10.6084/m9.figshare.25303501.v1
title: data from The mechanical properties of different cross-veins in the hind wing of locust <i>Locusta migratoria</i> under uniaxial tensile and stress relaxation tests

description: Locust <i>Locusta migratoria</i> exhibits remarkable aerial performances, relying predominantly on its hind wings that generate most of lift and thrust for flight. The mechanical properties of the cross-veins determine the deformation of the hind wing, which greatly affect the aerodynamic performance of flapping flight. However, whether the mechanical behaviours of the locust cross-veins change with loading rate is still unknown. In this study, cross-veins in four physiological regions (anterior–medial, anterior–lateral, posterior–medial and posterior–lateral) of the hind wing from adult locusts were investigated using uniaxial tensile test, stress relaxation test and fluorescence microscopy. It was found that the cross-veins were a type of viscoelastic material (including rate-independent elastic modulus and obvious stress relaxation). The cross-veins in the two anterior regions of the hind wing had significantly higher elastic moduli and higher ultimate tensile stress than those of its two posterior regions. This difference might be attributed to different resilin distributed patterns in the cross-veins. These findings furnish new insights into the mechanical characteristics of the locust cross-veins, which might deepen our understanding of the aerodynamic mechanisms of locust flapping flight.
DOI: 10.6084/m9.figshare.13023729
title: Additional file 1 of Using machine learning of clinical data to diagnose COVID-19: a systematic review and meta-analysis

description: Additional file 1 : Table S1. Correlation Results between All Pairs of Variables.
DOI: 10.6084/m9.figshare.13023729.v1
title: Additional file 1 of Using machine learning of clinical data to diagnose COVID-19: a systematic review and meta-analysis

description: Additional file 1 : Table S1. Correlation Results between All Pairs of Variables.
DOI: 10.6084/m9.figshare.13023741
title: Additional file 4 of Using machine learning of clinical data to diagnose COVID-19: a systematic review and meta-analysis

description: Additional file 4 : Table S4. (TXT 104 kb)
DOI: 10.6084/m9.figshare.13023741.v1
title: Additional file 4 of Using machine learning of clinical data to diagnose COVID-19: a systematic review and meta-analysis

description: Additional file 4 : Table S4. (TXT 104 kb)