cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p9jtahxz
title: Accumulated wastewater calculations for smallmouth bass sampling sites in the Shenandoah River Watershed, USA

description: This data release presents calculated accumulated wastewater (ACCWW, as a percent of total streamflow) values for 43 National Hydrologic Dataset Version 2.1 (NHDPlus V2.1) stream segments coinciding with long-term smallmouth bass sampling locations (Table 1) in the Shenandoah River Watershed (encompassing parts of Virginia and West Virginia, USA). Values are calculated for quarter-year (Quarter 1 [Q1], January - March; Quarter 2 [Q2], April - June; Quarter 3 [Q3], July-September; Quarter 4 [Q4], October-December) time scales (Table 2) and annual time scales (Table 3) for years 2000 to 2018. Estimates at a stream segment represent the combined total upstream wastewater discharges as well as direct discharges into the stream segment. Any users of these data should review the entire metadata record and the associated manuscript (see Larger Work Citation). See 'Distribution Liability' statements for more information.
DOI: 10.6084/m9.figshare.23646336
title: Exactly Uncorrelated Sparse Principal Component Analysis

description: Sparse principal component analysis (PCA) aims to find principal components as linear combinations of a subset of the original input variables without sacrificing the fidelity of the classical PCA. Most existing sparse PCA methods produce correlated sparse principal components. We argue that many applications of PCA prefer uncorrelated principal components. However, handling sparsity and uncorrelatedness properties in a sparse PCA method is nontrivial. This article proposes an exactly uncorrelated sparse PCA method named EUSPCA, whose formulation is motivated by original views and motivations of PCA as advocated by Pearson and Hotelling. EUSPCA is a non-smooth constrained non-convex manifold optimization problem. We solve it by combining augmented Lagrangian and non-monotone proximal gradient methods. We observe that EUSPCA produces uncorrelated components and maintains a similar or better level of fidelity based on adjusted total variance through simulated and real data examples. In contrast, existing sparse PCA methods produce significantly correlated components. Supplemental materials for this article are available online.
DOI: 10.6084/m9.figshare.23646336.v1
title: Exactly Uncorrelated Sparse Principal Component Analysis

description: Sparse principal component analysis (PCA) aims to find principal components as linear combinations of a subset of the original input variables without sacrificing the fidelity of the classical PCA. Most existing sparse PCA methods produce correlated sparse principal components. We argue that many applications of PCA prefer uncorrelated principal components. However, handling sparsity and uncorrelatedness properties in a sparse PCA method is nontrivial. This article proposes an exactly uncorrelated sparse PCA method named EUSPCA, whose formulation is motivated by original views and motivations of PCA as advocated by Pearson and Hotelling. EUSPCA is a non-smooth constrained non-convex manifold optimization problem. We solve it by combining augmented Lagrangian and non-monotone proximal gradient methods. We observe that EUSPCA produces uncorrelated components and maintains a similar or better level of fidelity based on adjusted total variance through simulated and real data examples. In contrast, existing sparse PCA methods produce significantly correlated components. Supplemental materials for this article are available online.
DOI: 10.5281/zenodo.8156740
title: Data related to solar forcing pattern effect in SPEAR

description: Annual mean fields (t_ref, t_surf, etc) related to solar forcing perturbation experiments.
DOI: 10.5517/ccdc.csd.cc2d475z
title: CCDC 2208600: Experimental Crystal Structure Determination

description: Related Article: Maxim A. Faraonov, Evgeniya I. Yudanova, Alexey V. Kuzmin, Salavat S. Khasanov, Sergey I. Troyanov, Akihiro Otsuka, Hideki Yamochi, Hiroshi Kitagawa, Dmitri V. Konarev|2023|CrystEngComm|25|4620|doi:10.1039/D3CE00564J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.8156739
title: Data related to solar forcing pattern effect in SPEAR

description: Annual mean fields (t_ref, t_surf, etc) related to solar forcing perturbation experiments.
DOI: 10.5281/zenodo.8302960
title: Data related to solar forcing pattern effect in SPEAR

description: Annual mean fields (t_ref, t_surf, etc) related to solar forcing perturbation experiments.
DOI: 10.5517/ccdc.csd.cc2g30sd
title: CCDC 2267023: Experimental Crystal Structure Determination

description: Related Article: Guoqi Zhang, Haisu Zeng, Quan Tang, Selin Ates, Shengping Zheng, Michelle C. Neary|2023|Dalton Trans.|52|11395|doi:10.1039/D3DT01865B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g2kty
title: CCDC 2266590: Experimental Crystal Structure Determination

description: Related Article: Chuan-Heng Yeh, Meng-Jung Tsai, Pei-Chin Lee, Jing-Yun Wu|2023|Inorg.Chem.|62|13453|doi:10.1021/acs.inorgchem.3c01800
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.5484110
title: ASL-Skeleton3D

description: The ASL-Skeleton3D introduces a representation based on mapping into the three-dimensional space the coordinates of the signers in the ASLLVD dataset. This enables a more accurate observation of the body parts and the signs articulation, allowing researchers to better understand the language and explore other approaches to the SLR field.
DOI: 10.5281/zenodo.5484109
title: ASL-Skeleton3D

description: The ASL-Skeleton3D introduces a representation based on mapping into the three-dimensional space the coordinates of the signers in the ASLLVD dataset. This enables a more accurate observation of the body parts and the signs articulation, allowing researchers to better understand the language and explore other approaches to the SLR field.
DOI: 10.5281/zenodo.5484145
title: ASL-Phono

description: The ASL-Phono introduces a novel linguistics-based representation, which describes the signs in the ASLLVD dataset in terms of a set of attributes of the American Sign Language phonology.
DOI: 10.5281/zenodo.5484144
title: ASL-Phono

description: The ASL-Phono introduces a novel linguistics-based representation, which describes the signs in the ASLLVD dataset in terms of a set of attributes of the American Sign Language phonology.
DOI: 10.18112/openneuro.ds004724.v1.0.0
title: CogQuad
DOI: 10.15139/s3/ko8buo
title: Speed-dating at a Comic Book Convention, 2013; 2015

description: Our datasets are from 16 speed-dating events conducted at three separate comic conventions in Toronto in 2013 and 2015. Some participants were in costumes of fictional anime characters. Daters attending the speed-dating event were invited to participate in the study, and nearly all agreed. Attendees went on 13–15 3-min dates with participants of the opposite gender. Women remained seated while men rotated to the next date. Participants ranged in age from 18-30. PLEASE NOTE QUESTIONNAIRES VARIED slightly between the samples, and hence the number of participants available depends on your research question. Please see attached excel file for a list of questionnaires and approximate sample size for each At the beginning of the event, participants completed a pre-survey with several demographic and individual difference measures (e.g., attachment, Big 5, destiny/growth, Sociosexual Inventory, Fear of Being Single, anticipated reactions to rejection/acceptance, motivations for speed-dating, approach/avoidance motivations, menstrual cycle information, etc.). Their photos were taken prior to the event commencing. Then after each date during the speed-dating event, participants responded to a questionnaire reflecting their impressions of that dater (e.g., physical attractiveness, how selective the dater is, self-expansion motivation, perceptions of attachment style, perceptions of partner's interest, etc.). Importantly, each dater indicated whether or not they would like to share their contact information (when both daters mutually agree to share contact information, this is considered a "match".) A few hours after the event, participants received their matches. In two samples (2013) they received a brief survey asking their positive and negative emotions regarding their matches, rejections, and missed opportunities. In one sample (2015), participants were followed up every week for 12 weeks, to assess whether they had made contact with their matches, and track any budding relationships. This study was approved by the ethics board of the University of Toronto.
DOI: 10.48366/r608240
title: State-of-the-art pedestrian detectors evaluation comparision

description: State-of-the-art pedestrian detectors evaluation comparison
DOI: 10.5281/zenodo.8302970
title: Tracking data for gentoo penguins (Pygoscelis papua) breeding in two sites on the Western Antarctic Peninsula in season 2022/23

description: This dataseta contain tracking data of gentoo penguins (<em>Pygoscelis papua</em>) during december 2022, breeding in Harmony Point (Nelson Island, South Shetland Islands) and Kopaitic Island (Antarctic Peninsula). Tracking was made with axy-trek marine devices, consisting of 5-minute interval GPS fixes and time depth recorders (TDR). TDR data was previously processed using the R script (appended) to generate summarized dive statistics using the diveMove R package. Each animal have two files, one for raw GPS data and one for summarized dive statistics. Production of this dataset was supported by the Instituto Antártico Chileno, Programa Áreas Marinas Protegidas (AMP 24 03 052), ANID – Programa Iniciativa Milenio – ICN2021_002 (BASE).
DOI: 10.5281/zenodo.8302969
title: Tracking data for gentoo penguins (Pygoscelis papua) breeding in two sites on the Western Antarctic Peninsula in season 2022/23

description: This dataseta contain tracking data of gentoo penguins (<em>Pygoscelis papua</em>) during december 2022, breeding in Harmony Point (Nelson Island, South Shetland Islands) and Kopaitic Island (Antarctic Peninsula). Tracking was made with axy-trek marine devices, consisting of 5-minute interval GPS fixes and time depth recorders (TDR). TDR data was previously processed using the R script (appended) to generate summarized dive statistics using the diveMove R package. Each animal have two files, one for raw GPS data and one for summarized dive statistics. Production of this dataset was supported by the Instituto Antártico Chileno, Programa Áreas Marinas Protegidas (AMP 24 03 052), ANID – Programa Iniciativa Milenio – ICN2021_002 (BASE).
DOI: 10.34740/kaggle/dsv/6390816
title: Balochi Language to English Translation Dataset
DOI: 10.6084/m9.figshare.24061371
title: <b>Los diez países más activos en la publicación de literatura relacionada con el transhumanismo y el biohacking</b>

description: <b>Los diez países más activos en la publicación de literatura relacionada con el transhumanismo y el biohacking</b>
DOI: 10.6084/m9.figshare.24061371.v1
title: <b>Los diez países más activos en la publicación de literatura relacionada con el transhumanismo y el biohacking</b>

description: <b>Los diez países más activos en la publicación de literatura relacionada con el transhumanismo y el biohacking</b>
DOI: 10.5281/zenodo.8302963
title: Toxic Memes Detection Dataset

description: The dataset for training and evaluating toxic memes detection models. Images are collected from popular Russian Telegram channels and labelled with respect to Facebook Community Standards.
DOI: 10.5281/zenodo.8302962
title: Toxic Memes Detection Dataset

description: The dataset for training and evaluating toxic memes detection models. Images are collected from popular Russian Telegram channels and labelled with respect to Facebook Community Standards.
DOI: 10.5281/zenodo.8104610
title: Data, Code and Computational Environment for: Wild olive tree genetic diversity in Greece: a diverse resource in danger of erosion

description: <strong>Data</strong> The csv file "2023-06-27_data.csv" contains genetic profiles for all olive trees analyzed in the publication: Wild olive tree genetic diversity in Greece: a diverse resource in danger of erosion". The genotypes are provided in the GenAlEx format. <strong>Code</strong> Code is provided in the compressed folder "Tourvas_et_al_Olive". It is structured as a R project and can easily be opened, after decompressing, from the Rstudio interface. If you prefer to review and/or reuse code you can access it from the "analysis" folder inside the "Tourvas_et_al_Olive" folder. <strong>Computational Environment</strong> A tarball for the Docker image "tourvas_et_al_olive" is also provided. This is the recommended way to reproduce the results of the publication: "Wild olive tree genetic diversity in Greece: a diverse resource in danger of erosion". It is assumed that you already have Docker installed on your system. If not, please visit https://docs.docker.com/get-started/ To use it: download the image file tourvas_et_al_olive.tar load it with docker with the command: <pre><code class="language-bash">docker load --input tourvas_et_al_olive.tar</code></pre> then launch the Docker container with the command: <pre><code class="language-bash">docker run --name popgen --rm -dp 8787:8787 -e ROOT=TRUE -e DISABLE_AUTH=true -v "`pwd`":/home/rstudio/working nikostourvas/tourvas_et_al_olive</code></pre> start your favorite web browser and go to: http://localhost:8787/ from the bottomright pane of the Rstudio server click on the directory "Tourvas_et_al_Olive" and open the project by clicking on the "Tourvas_et_al_Olive.Rproj" file launch the scripts inside the "analysis" directory and run them to reproduce results
description: This research has been financed by Greek national funds through the Public Investments Program (PIP) of General Secretariat for Research & Technology (GSRT), under the Emblematic Action "The Οlive Road" (project code: 2018ΣΕ01300000) and by project Crown Genome, funded by the General Secretariat for Research and Innovation, Greece and the Aristotle University of Thessaloniki (project code 40220). Results presented in this work have been produced using the Aristotle University of Thessaloniki (AUTh) High Performance Computing Infrastructure and Resources.
DOI: 10.5281/zenodo.8104609
title: Data, Code and Computational Environment for: Wild olive tree genetic diversity in Greece: a diverse resource in danger of erosion

description: <strong>Data</strong> The csv file "2023-06-27_data.csv" contains genetic profiles for all olive trees analyzed in the publication: Wild olive tree genetic diversity in Greece: a diverse resource in danger of erosion". The genotypes are provided in the GenAlEx format. <strong>Code</strong> Code is provided in the compressed folder "Tourvas_et_al_Olive". It is structured as a R project and can easily be opened, after decompressing, from the Rstudio interface. If you prefer to review and/or reuse code you can access it from the "analysis" folder inside the "Tourvas_et_al_Olive" folder. <strong>Computational Environment</strong> A tarball for the Docker image "tourvas_et_al_olive" is also provided. This is the recommended way to reproduce the results of the publication: "Wild olive tree genetic diversity in Greece: a diverse resource in danger of erosion". It is assumed that you already have Docker installed on your system. If not, please visit https://docs.docker.com/get-started/ To use it: download the image file tourvas_et_al_olive.tar load it with docker with the command: <pre><code class="language-bash">docker load --input tourvas_et_al_olive.tar</code></pre> then launch the Docker container with the command: <pre><code class="language-bash">docker run --name popgen --rm -dp 8787:8787 -e ROOT=TRUE -e DISABLE_AUTH=true -v "`pwd`":/home/rstudio/working nikostourvas/tourvas_et_al_olive</code></pre> start your favorite web browser and go to: http://localhost:8787/ from the bottomright pane of the Rstudio server click on the directory "Tourvas_et_al_Olive" and open the project by clicking on the "Tourvas_et_al_Olive.Rproj" file launch the scripts inside the "analysis" directory and run them to reproduce results
description: This research has been financed by Greek national funds through the Public Investments Program (PIP) of General Secretariat for Research & Technology (GSRT), under the Emblematic Action "The Οlive Road" (project code: 2018ΣΕ01300000) and by project Crown Genome, funded by the General Secretariat for Research and Innovation, Greece and the Aristotle University of Thessaloniki (project code 40220). Results presented in this work have been produced using the Aristotle University of Thessaloniki (AUTh) High Performance Computing Infrastructure and Resources.
DOI: 10.17909/5kem-8r51
title: pi1Gru IUE spectra
DOI: 10.17909/xkkj-dk33
title: JWST Cycle 1 Flux Calibration Programs

description: Includes data from PIDS 1536, 1537, 1538, 1487, and 1493. These programs observed flux standard stars with JWST instruments.
DOI: 10.6084/m9.figshare.24006797
title: Mast cell activation may contribute to adverse health transitions in COVID-19 patients with frailty

description: A prominent aspect of the post-coronavirus disease-2019 (post-COVID-19) era is long-COVID. Therefore, precise patient classification and exploration of the corresponding factors affecting long-COVID are crucial for tailored treatment strategies. Frailty is a common age-related clinical syndrome characterized by deteriorated physiological functions of multiple organ systems, which increases susceptibility to stressors. Herein, we performed an inclusion and exclusion analysis (definite COVID-19 infection diagnosis, clear underlying disease information, ≥60 years old, and repeated sampling of clinical cases) of 10,613 blood samples and identified frailty cases for further investigation. RNA-Seq data were used for differential gene expression and functional and pathway analyses. The results revealed that patients with frailty were more prone to poor health conversions and more sequelae, and the blood transcriptome had obvious disturbances in pathways associated with immune regulation, metabolism, and stress response. These adverse health transitions were significantly associated with mast cell activation. Additionally, NCAPG, MCM10, and CDC25C were identified as hub genes in the peripheral blood differential gene cluster, which could be used as diagnostic markers of poor health conversion. Our results indicate that healthcare measures should be prioritized to mitigate adverse health outcomes in this vulnerable patient group, COVID-19 patients with frailty, in post-COVID era.
DOI: 10.6084/m9.figshare.24006797.v2
title: Mast cell activation may contribute to adverse health transitions in COVID-19 patients with frailty

description: A prominent aspect of the post-coronavirus disease-2019 (post-COVID-19) era is long-COVID. Therefore, precise patient classification and exploration of the corresponding factors affecting long-COVID are crucial for tailored treatment strategies. Frailty is a common age-related clinical syndrome characterized by deteriorated physiological functions of multiple organ systems, which increases susceptibility to stressors. Herein, we performed an inclusion and exclusion analysis (definite COVID-19 infection diagnosis, clear underlying disease information, ≥60 years old, and repeated sampling of clinical cases) of 10,613 blood samples and identified frailty cases for further investigation. RNA-Seq data were used for differential gene expression and functional and pathway analyses. The results revealed that patients with frailty were more prone to poor health conversions and more sequelae, and the blood transcriptome had obvious disturbances in pathways associated with immune regulation, metabolism, and stress response. These adverse health transitions were significantly associated with mast cell activation. Additionally, NCAPG, MCM10, and CDC25C were identified as hub genes in the peripheral blood differential gene cluster, which could be used as diagnostic markers of poor health conversion. Our results indicate that healthcare measures should be prioritized to mitigate adverse health outcomes in this vulnerable patient group, COVID-19 patients with frailty, in post-COVID era.
DOI: 10.5281/zenodo.8302951
title: Analysis of an optical imaging system prototype for autonomously monitoring zooplankton in an aquaculture facility

description: This upload consists of a zip file containing all the images used in the zooplankton training library. Individual folders of each zooplankton class contain all the images in the training library for that respective class. Each image is labeled with its actual classification. The labeled images provide a reproducible source to test and retest various classification algorithms and image decomposition approaches.
DOI: 10.5281/zenodo.8302950
title: Analysis of an optical imaging system prototype for autonomously monitoring zooplankton in an aquaculture facility

description: This upload consists of a zip file containing all the images used in the zooplankton training library. Individual folders of each zooplankton class contain all the images in the training library for that respective class. Each image is labeled with its actual classification. The labeled images provide a reproducible source to test and retest various classification algorithms and image decomposition approaches.
DOI: 10.25345/c5qv3cf05
title: MassIVE MSV000092795 - Suillus_coculture_metabolomics
title: It includes the LC-ESI-MS/MS measurements for untargeted metabolomics analysis of three species of Suillus cultured under monoculture and coculture conditions.