cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6743267.v1
title: Supplementary Material for: Tolerability and Efficacy of Neoadjuvant Chemotherapy with a Tri-Weekly Interval Methotrexate, Doxorubicin, Vinblastine, and Cisplatin Regimen for Patients with Locally Advanced Bladder Cancer

description: <b><i>Objective:</i></b> Compared with standard treatment, a modified tri-weekly MVAC (methotrexate, doxorubicin, vinblastine, and cisplatin) treatment regimen with a high cisplatin dose intensity shows good efficacy and lower toxicity. Thus, we retrospectively investigated the tolerability and efficacy of a modified tri-weekly MVAC neoadjuvant regimen. <b><i>Methods:</i></b> We analyzed 25 patients with locally advanced bladder cancer medicated by a modified tri-weekly MVAC neoadjuvant regimen that omits treatment on days 15 and 22. The efficacy and tolerability were assessed retrospectively. <b><i>Results:</i></b> The numbers of patients in clinical stages 2, 3, and 4 were 13 (52.0%), 1 (4.0%), and 11 (44.0%), respectively. Surgery could be performed on all patients. Five patients (20.0%) had no cancer remaining in their surgical specimens. Remaining non-muscle-invasive cancer without metastasis was observed in 7 patients (28.0%), and the total downstaging rate was 44.0%. The 5-year overall and relapse-free survival rates were 79.0 and 75.0%, respectively. The overall relative dose intensity was 0.90. Serious hematologic toxicities rated grade 3 or greater were leukopenia in 6 patients (24.0%) and anemia in 1 patient (4.0%). <b><i>Conclusions:</i></b> Sufficient efficacy and tolerability of a modified tri-weekly MVAC neoadjuvant regimen were suggested. Thus, tri-weekly modified MVAC may be an option for neoadjuvant chemotherapy of advanced bladder cancer.
DOI: 10.6084/m9.figshare.17192903.v1
title: Flora of Espírito Santo, Brazil – Angiosperm checklist and conservation of one the richest restingas in southeastern Brazil – Supplementary Material

description: <b>Table S1 – </b>List of angiosperm species occurring in the Paulo César Vinha State Park, Guarapari, Espíccording to Pereira (2003)<b>Table S2 – </b>List of threatened species of angiosperms that occur in the Paulo César Vinha State Park, Guarapari, Espíng to Pereira (2003)<br><br>This Supplementary Material is part of <b>http://dx.doi.org/10.1590/2175-7860202172027</b>
DOI: 10.6084/m9.figshare.24069258.v1
title: Pubmed Author Query Results

description: This database includes author information for ~94k publications across 15 journals in various biology-related subdisciplines from 2003-2022 (inclusive). Each file represents a single journal. Within each file, the "Main Article" represents a primary publication being analyzed, whereas the "Cited Article" represents an article that was cited/referenced within the indicated Main Article. The author lists (as well as variations of the author list with author initials) are included for both the Main Article and the Cited Article. All files in this database only include publications (and references therein) with valid PubMed IDs that were successfully retrieved via automated PubMed API queries.
DOI: 10.6084/m9.figshare.5023232.v2
title: Data and code to reproduce Dallas, Decker, Hastings. "Species are not most abundant in the center of their geographic range or climatic niche"

description: This repository contains the code and data to reproduce the analyses and figures from:<br>Dallas, T., R. Decker, and AM Hastings. 2017. "Species are not most abundant in the center of their geographic range or climatic niche" <i>Ecology Letters</i><br><br>Note that these data sources are published elsewhere, and if these data used, the original data sources should be cited. <br><br>
DOI: 10.17632/3g95ns5rpj
title: Data for: Development and application of dairy-based sustainable livelihood security index in the districts of West Bengal, India: A tool for dairy development planning

description: District wise data base of 18 states of West Bengal on 17 indicators
DOI: 10.17632/7tj8hpmnmt
title: Data for: Do beliefs yield to evidence? Examining belief perseverance vs. change in response to congruent empirical findings

description: Data and syntax files for manuscript, Do beliefs yield to evidence? Examining belief perseverance vs. change in response to congruent empirical findings (Anglin, 2019). Syntax files contain the code necessary to reproduce the analyses included in the paper.
DOI: 10.17632/ygmy7hc57z
title: Cervicothoracic cyriax on patients with text neck syndrome

description: Text neck syndrome is a common problem in this day and age because of the proliferation of smart gadgets. Cervicothoracic cyriax manipulation is presented as a treatment option for this demographic in this study.
DOI: 10.17632/c7zh35r9c4
title: Data from: Mastication treatments increase perennial herbaceous cover across soil types in southeastern Colorado piñon-juniper woodlands

description: In this study we assessed vegetation responses to mastication treatments across three dominant soil types in two-needle piñon (Pinus edulis Engelm. [Pinaceae]) - one-seed juniper (Juniperus monosperma [Engelm.] Sarg.) woodlands in southeast Colorado, USA – a region characterized by monsoonal precipitation, limited presence of introduced plant species, and relatively high grazing intensity by cattle and wildlife. We surveyed understory species composition in the year prior to mastication (2018) as well as 1 (2019) and 3 years (2021) post-mastication. Fifteen sites were established, with paired treatment and control plots that measured 10 by 50 meters. The line point intercept method was used to survey ground cover and plant community composition across all years. Targeted sampling of understory plants also occurred in small quadrats in 2019 and 2021 under where canopy trees existed prior to mastication, on the edge of the tree canopy prior to mastication, and in the interspace.
DOI: 10.17632/cv6zbs4zrg
title: Supplemental data files for:The deformation mechanism in the western Qiangtang block and its surroundings: evidence form magnetotellurics data

description: Data files for a Magnetotellurics array study on the deep geo-electrical structure of the lithospheric structure underneath the west Qiangtang, conducted by China University of Geosciences in Beijing.
DOI: 10.6084/m9.figshare.28512926.v1
title: Electrophysiological data of antennal recordings and code

description: Electrophysiology data accompanying the paper "Bumblebees learn to use peripheral taste to predict the presence of nectar in flowers" by M Harrap, R Parkinson, H Jones, and G Wright.Columns are:<br>1. BeeID: individual identifierlocation: mid or tip, relates to the position on the most distal segment of the antennae where the recordings were made.sensillum: within-bee unique sensillum identifierstim: stimulus used to obtain the recordingconc: concentration, in mMavg1s: number of spikes per 1s (i.e., the spikes per second)cols 7-end are binned spikes (100 ms bins) for 2 s.<br>R file ("Antennal_stats") contains all analyses performed to generate figures and statistics.
DOI: 10.6084/m9.figshare.28920229.v1
title: Upscaling UAV and Lidar-derived forest gap area and edge length extractions using radar and optical sentinel images

description: UAV and LiDAR data are valuable for mapping forest gaps in small areas but face cost and accessibility challenges for larger regions. This study explored using UAV and LiDAR data to create reference information on forest gaps and edge lengths for upscaling (that is providing information on forest across wider spatial extents) with satellite data. We examined forest gap mapping across four global sites: Daland Forest Park (Iran), Hardtwald Forest (Germany), Petawawa Research Forest (Canada), and Luxembourg Forest (Luxembourg). High-quality UAV and ALS LiDAR data were used to extract and map forest gaps by creating Canopy Height Models (CHM) and applying height thresholds. SAR Sentinel-1 and optical Sentinel-2 images were then employed to upscale the results using the Random Forest (RF) regression model. Gap area and edge length were calculated within grid cells using varied grid sizes to determine the optimal spatial grain for upscaling. The study also evaluated the impact of sampling strategies and feature selection on model performance. Results showed that grids with dimensions of 20 × 20 meters showed the best results for estimating gap areas. The UAV- and LiDAR-derived gap area could be upscaled with satellite data with R2 values of 0.587, 0.711, 0.843, and 0.835 for the DFP, HF, PRF, and LF regions, respectively (all RMSE (scaled between 0 and 1) were smaller than 0.108). For edge length we obtained good model performances as well with R2 of 0.840, 0.690, 0.712, and 0.612, respectively for DFP, HF, PRF, and LF regions (all RMSE were smaller than 0.137). Feature selection and balancing dependent samples improved the upscaling results. The study demonstrates the potential of using Sentinel data to upscale canopy gap information from UAV and LiDAR data in areas with limited high-quality data, providing valuable insights for forest managers and ecologists in temperate forests.
DOI: 10.6084/m9.figshare.12804887.v1
title: Supplementary Tables S1, S2 and S3

description: Supplementary Tables S1, S2 and S3 for the report by Souchelnytskyi et al.
DOI: 10.6084/m9.figshare.1517100.v1
title: SP modeling talk

description: Talk for USP students (Mochizuki) Aug 2015
DOI: 10.6084/m9.figshare.12084831.v2
title: Supporting Data and Code for Analysis

description: Data and Code for "Comparing Metapopulation Dynamics of Infectious Diseases under Different Models of Human Movement" by Daniel Citron et al.<br>The two R markdown notebooks explain how to perform the analysis of malaria transmission and importation on Bioko Island in Equatorial Guinea.<br><br>The notebook "Travel_Destination_Choice_Model.Rmd" explains how to model travelers' destination choices. (Supporting data: Raw_travel_data.csv).<br>The notebook "Comparing_Metapopulation_Dynamics_companion_code.Rmd" explains how we use the travel models to generate the time at risk matrix (Dataset_S4_time_at_risk_matrix.csv) and use that matrix to produce estimates of R_0 across Bioko Island. (Supporting data: Dataset_S2_modeled_PR_and_travel.csv, Dataset_S3_travel_duration_data.csv)<br>
DOI: 10.6084/m9.figshare.c.3721705_d1.v1
title: Additional file 10 of Preservation affinity in consensus modules among stages of HIV-1 progression

description: List of non-progressor stage genes involved in category-3 (acuteâ  non-progressor stage pair) consensus module formation. (XLSX 21.5 kb)
DOI: 10.6084/m9.figshare.1149951.v1
title: adjacency network of common adjectives and nouns in the novel David Copperfield by Charles Dickens

description: The file adjnoun.gml contains the network of common adjective and noun<br>adjacencies for the novel "David Copperfield" by Charles Dickens, as<br>described by M. Newman. Nodes represent the most commonly occurring<br>adjectives and nouns in the book. Node values are 0 for adjectives and 1<br>for nouns. Edges connect any pair of words that occur in adjacent position<br>in the text of the book. Please cite M. E. J. Newman, Finding community<br>structure in networks using the eigenvectors of matrices, Preprint<br>physics/0605087 (2006).
DOI: 10.6084/m9.figshare.11822208.v1
title: Supplementary Material for: Efficacy of a Specialized Group Intervention for Compulsive Exercise in Inpatients with Anorexia Nervosa: A Randomized Controlled Trial

description: <b><i>Introduction:</i></b> Treatment of compulsive exercise is recognized as a key unmet challenge in the treatment of anorexia nervosa (AN). To address this challenge, we developed the manualized group intervention “healthy exercise behavior” (HEB). This study evaluates the efficacy of HEB for the reduction of compulsive exercise as add-on to routine inpatient treatment (treatment as usual [TAU]) in a randomized controlled trial. <b><i>Methods:</i></b> Two hundred and seven adolescent and adult female inpatients with (atypical) AN were randomly allocated to TAU or to additional participation in HEB (TAU + HEB). HEB integrates elements of exercise-based therapy into a cognitive-behavioral approach. Assessments took place at admission, pre-intervention, post-intervention, discharge, and 6 months follow-up. Primary outcome was the severity of compulsive exercise assessed by the Commitment to Exercise Scale between pre- and post-intervention; secondary outcomes were additional aspects of compulsive exercise, assessed by the Compulsive Exercise Test, weight gain, eating disorder and general psychopathology, and emotion regulation. <b><i>Results:</i></b> In intention-to-treat analysis for the primary outcome, the TAU + HEB group showed significantly stronger reductions in the severity of compulsive exercise compared to the TAU group (<i>z</i> = –2.81; <i>p</i> = 0.005; effect size [ES] = –0.3). We also found significantly stronger reductions from admission to discharge (<i>z</i>= 2.62; <i>p</i> = 0.009; ES = –0.43), and from admission to follow-up (<i>z</i> = 2.1; <i>p</i> = 0.035; ES = –0.39). Regarding secondary outcomes, we found significant group differences between pre- and post-intervention in additional aspects of compulsive exercise (<i>z</i> = –2.55; <i>p</i> = 0.011; ES = –0.27). We did not find significant differences regarding weight gain, eating disorder and general psychopathology, and emotion regulation. <b><i>Conclusions:</i></b> Our intervention proved efficacious in reducing compulsive exercise in inpatients with (atypical) AN.
DOI: 10.6084/m9.figshare.19312607.v3
title: scDRS_data_release_030122.score_file_tmsfacs

description: scDRS results for TMS FACS + 75 diseases/traits (.score.gz and .full_score.gz files) (revision 1). <br>The 75 diseases/traits contain 74 diseases/traits analyzed in revision 1 and PASS_BIP_Stahl2019 analyzed in the initial submission.<br>Results are computed using weighted gene sets (top 1,000 MAGMA genes with MAGMA z-score weights).
DOI: 10.6084/m9.figshare.24031878.v1
title: Supplementary Material for: Case Series of Hepatosplenic T cell lymphoma: A Rare and Aggressive Disease

description: Hepatosplenic T cell lymphoma is a rare form of T-cell lymphoma that predominantly emerges from neoplastic proliferation of cytotoxic T-cells of γ/δ T-cell receptor-expressing lymphocytes. Isochromosome 7q and trisomy 8 are the most prevalent chromosomal abnormalities associated with hepatosplenic T cell lymphoma, and most patients have mutations in genes related to chromatin remodelling or the JAK/STAT system. Hepatosplenic T-cell lymphoma can mimic various infectious diseases, immunological conditions, and other malignancies. Patients usually present with nonspecific constitutional symptoms and spleen and liver enlargement, with variable degrees of cytopenia. The rarity of this disease, coupled with the lack of lymph node involvement that is usually seen in lymphomas, causes significant difficulty in diagnosis, which inevitably delays the initiation of treatment. Managing this lymphoma is arduous because of its late presentation and aggressive nature, frequently resulting in rapid progression in its clinical course and refractoriness to conventional chemotherapy. There is a lack of international guidelines for its treatment, and in most cases, treatment is guided by case series. Here, we highlight the clinicopathological features and management of hepatosplenic T-cell lymphoma over a 10-year span in a single hematology referral center and review the literature.
DOI: 10.6084/m9.figshare.5530483.v1
title: cytb alignment

description: Alignment of cytb gene sequences from representatives of Oligoryzomys
DOI: 10.17632/47jrp8w56h
title: Survey on product safety culture in regulated product development (survey data)

description: Quantitative survey with raw data and multiple imputation. Data acquisition and multiple imputation method will be described in the corresponding publication "Product safety culture as a concept for the development of safety-critical systems products in regulated industries" (to be published in Safety Science; you'll be kept posted here).
DOI: 10.17632/bmrshnf3g2
title: Transversal Connectivity Index (TCI) for measuring the effectiveness of urban Blue-green infrastructure

description: This model introduces the Transversal Connectivity Index (TCI) as an ecological indicator for classifying the natural landscape patches by their effective transversal connectivity to the water surfaces. The method applies specifically to urban areas at which the quality of blue-green infrastructure (BGI) is of fundamental importance in reducing the climate change consequences. Effective transversal connectivity among the BGI at the metropolitan scale supplies various ecosystem services in support of nature-based solutions for emerging urban challenges. The TCI value is computed (determined) by integrating a variety of existing and novel landscape indicators into an equation. The connectivity indicators belong to two categories: the intra-patch consists of the isoperimetric quotient , and patch ecological indicator , and the inter-patch ones listed as the band level , the shared border ratio , and the transport fragmentation buffer . (The Processing Modeler- QGIS, will be available up to request|)
DOI: 10.6084/m9.figshare.21800123.v1
title: Volunteers data

description: Characteristics of the volunteer population
DOI: 10.6084/m9.figshare.24123918.v1
title: Additional file 1 of Genome and whole-genome resequencing of Cinnamomum camphora elucidate its dominance in subtropical urban landscapes

description: Additional file 1: Table S1. Detailed information of tandemly duplicated genes in Cinnamomum camphora.            Table S2. Summary of repeat contents of Cinnamomum camphora.     Table S3. Data sources of 29 studied Lauraceae species. Table S4. Full name list of the gene abbreviations. Table S5. Top 50 biological process enriched GO terms (sorted by corrected p-value BH method) of genes in expanded orthogroups in Cinnamomum camphora relative to C. kanehirae. Table S6. Terpenoid biosynthesis (TPS) gene family of Cinnamomum camphora. Table S7. Main aromatic compounds of different tissues in Cinnamomum camphora.Table S8. List of the 75 resequenced Cinnamomum camphora accessions. Table S9. Protein-coding genes under strong balancing selection.
DOI: 10.6084/m9.figshare.7038791.v1
title: Blog: Nordic ethnobotany and conservation

description: Human ecology and ethnobotany explorations of Iceland and the Faroe Islands.<br>
DOI: 10.17632/cx35b3jj3m
title: Data for energy management in a smart home

description: The DATA_DSM_SINGLE_HOME.xls file contains the data for energy management in a single smart home for both cold and hot weather conditions over one day. The smart home manages a micro-trigeneration (mCCHP), a photovoltaic panel (PV), a battery, thermal energy storage (TES), power shiftable loads including a storage water heater (SWH) and an HVAC system, and a set of time-shiftable loads.
DOI: 10.17632/yfhgn8py5f
title: Dry Fruit Image Dataset

description: The "Dry Fruit Image Dataset" is a collection of 11500+ processed high-quality images representing 12 distinct classes of dry fruits. The 4 dry fruits—Almonds, Cashew Nuts, Raisins, and Dried Figs (Anjeer)—along with 3 sub-types of each are contained in the sub-folders, making a total of 12 distinct classes. These pictures were taken with a high-definition camera on cell phones. The dataset contains images in different lighting conditions as well as with different backgrounds. This dataset can be used for building machine learning models for the classification and recognition of Dry Fruits, requiring neat, appropriately tagged, and high-quality images. The dry fruit classification algorithm can be trained, tested, and validated using this dataset. Furthermore, it is beneficial for dry fruit research, education, and medicinal purposes.
DOI: 10.6084/m9.figshare.25003136.v2
title: Geocoding-Feature_Selection

description: The growing popularity of location-based services has resulted in the enhancement of resources for producing geographical data and the development of the amount of data kept in geographic databases. The big data stored in databases is valuable for advanced geospatial analysis in several fields, including emergency responses, crime and traffic management, disease surveillance, and more. Geocoding, a crucial preprocessing step in geospatial data analysis, involves retrieving textual descriptions of locations into geographic identifiers. Nevertheless, geocoding outcomes delivered by worldwide service providers neglect various constraints related to textual data, including misspellings, abbreviations, and non-standard names. To overcome this issue, we propose a new approach for enhancing the quality of online geocoding services through the utilization of feature selection techniques. The proposed method is based on text similarity algorithms that are utilized to match the retrieved addresses. Compared to conventional geocoding outcomes, there is potential for an improvement of approximately 10% to 25% in the address-matching procedures employed in online geocoding services. The improvement was accomplished through the utilization of two feature selection methods, specifically mutual information feature selection and minimum redundancy maximum relevance, out of a total of fourteen approaches. Furthermore, the findings indicate that it is appropriate to prioritize character-based text similarity algorithms when comparing addresses retrieved from online geocoding services.
DOI: 10.6084/m9.figshare.1515905.v1
title: MICROWAVE BROADCASTING TELEMETRIC / TELEMEDICAL ECG ADAPTOR FOR ON-LINE PATTERN RECOGNITION, AUTOMATIC PHYSIOLOGICAL DATA CLUSTERIZATION & DIAGNOSTICS

description: To realize the on-line technology of the ECG pattern recognition on the rotating reel recording bobbin lent we have designed an experimental model of the adapter that allows a telemedical broadcasting of the ECG signal (to the PC with a pattern recognition program) using 1.2 GHz microwave signal. This approach was developed initially for the multi-channel EEG recording, but it was later extended to ECG, which can be considered as a simplest regular case of electrophysiological recording.
DOI: 10.15468/dl.5bakfh
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sagamichthys schnakenbecki (Krefft, 1953)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((8.6827 2.71,8.9648 2.8113,8.9648 10.8496,-0.0352 10.8496,-0.0352 5.0957,0.3816 5.278,1.1532 5.3393,1.5603 5.6976,3.8925 5.9309,4.2618 5.8773,4.5416 5.6356,5.1549 4.4105,5.7546 3.8683,6.2396 3.7859,8.2757 4.0386,7.9361 3.4903,8.1439 2.8795,8.6827 2.71))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013102-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/cmyhpvspp9
title: Data of Polarization Curves, AC Impedance and Slow Strain Rate Tensile Test

description: These data describe the SCC behavior of X80 pipeline steel in a simulated solution of Yingtan soil containing SRB with different cathode potentials .
DOI: 10.6084/m9.figshare.20485760.v1
title: Additional file 2 of Conceptual framework for the insect metamorphosis from larvae to pupae by transcriptomic profiling, a case study of Helicoverpa armigera (Lepidoptera: Noctuidae)

description: Additional file 2: Table S2. Summary of clean reads mapped to the reference H. armigera genome.