cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15396268
title: Growth response of Norway spruce trees to selection harvest in continuous cover forestry stands on drained boreal peatlands

description: This is a supplementary item to a scientific study entitled 'Growth response of Norway spruce trees to selection harvest in continuous cover forestry stands on drained boreal peatlands'. The files available here include the data and R-code that can be used to re-run the analyses.
description: Continuous cover forestry (CCF) has less environmental impacts than rotation forestry, but knowledge on growth responses of different tree cohorts to selection harvesting is scarce. In this study, tree-ring data of dominant and suppressed Norway spruce (Picea abies (L.) H.Karst.) trees representing CCF-managed drained peatland stands from north to south boreal forests were analysed with respect to selection harvest to basal area of 12-13 m2/ha using generalized additive mixed models (GAMM). The first statistically significant impacts were seen in suppressed trees one year after thinning. In four out of five sites, the suppressed trees displayed significant impacts one year earlier than the dominant trees. In three sites, the post-thinning ring-widths of the suppressed trees were up to three to four times the predicted widths, three or four years after thinning, while dominant trees showed a 50 to 100% increase. However, the growth response of the basal area increment of suppressed trees was smaller, since the suppressed trees were on average smaller than the dominant trees. Thus, the lower growth after selection cutting previously observed at stand-level studies of CCF is likely due to the removal of a large proportion of large productive trees, rather than a small or delayed response of suppressed trees. It seems that the elevated water table in the harvested plots through decreased evapotranspiration did not limit the post-harvest growth release in the case of the selection harvest experiment of the present study. If the elevated water table had any effect on the growth release, this mechanism was probably less counterproductive for suppressed trees which also benefitted from improved light conditions.
DOI: 10.5281/zenodo.15396269
title: Growth response of Norway spruce trees to selection harvest in continuous cover forestry stands on drained boreal peatlands

description: This is a supplementary item to a scientific study entitled 'Growth response of Norway spruce trees to selection harvest in continuous cover forestry stands on drained boreal peatlands'. The files available here include the data and R-code that can be used to re-run the analyses.
description: Continuous cover forestry (CCF) has less environmental impacts than rotation forestry, but knowledge on growth responses of different tree cohorts to selection harvesting is scarce. In this study, tree-ring data of dominant and suppressed Norway spruce (Picea abies (L.) H.Karst.) trees representing CCF-managed drained peatland stands from north to south boreal forests were analysed with respect to selection harvest to basal area of 12-13 m2/ha using generalized additive mixed models (GAMM). The first statistically significant impacts were seen in suppressed trees one year after thinning. In four out of five sites, the suppressed trees displayed significant impacts one year earlier than the dominant trees. In three sites, the post-thinning ring-widths of the suppressed trees were up to three to four times the predicted widths, three or four years after thinning, while dominant trees showed a 50 to 100% increase. However, the growth response of the basal area increment of suppressed trees was smaller, since the suppressed trees were on average smaller than the dominant trees. Thus, the lower growth after selection cutting previously observed at stand-level studies of CCF is likely due to the removal of a large proportion of large productive trees, rather than a small or delayed response of suppressed trees. It seems that the elevated water table in the harvested plots through decreased evapotranspiration did not limit the post-harvest growth release in the case of the selection harvest experiment of the present study. If the elevated water table had any effect on the growth release, this mechanism was probably less counterproductive for suppressed trees which also benefitted from improved light conditions.
DOI: 10.5281/zenodo.15517342
title: Soil biodiversity in the Atacama Desert

description: This data set contains the fasta sequences of the 18S region of nematodes isolated from the Atacama Desert. This project belong to the CRC1211 "Earth-Evolution at the dry limit" and all files required to reproduce the analysis done in the manuscript titled "Hierarchical Patterns of Soil Biodiversity in the Atacama Desert: Insights Across Biological Scales". All scripts are deposited on github (https://github.com/lauraivillegasr/BiogeographyDesert).
DOI: 10.1285/i22402772a5
title: Quaderni Lupiensi di Storia e Diritto, Anno V, 2015
DOI: 10.6084/m9.figshare.29148839
title: original data.zip

description: Role of lnc-FGFR1-2:1 in Modulating Proliferation, Apoptosis, and Invasion of Cervical Cancer Cells
DOI: 10.5281/zenodo.15433672
title: EC Regulations for the Use of Enzymes for Household Products and implementation in national laws of OXIPRO consortium member states

description: This survey-based analysis shows how EU-level regulations - such as REACH, CLP and the Food Enzymes Directives - are implemented at national level by the consortium's member states. It also sheds light on country-specific requirements such as national safety assessments or independent regulatory pathways in countries such as the UK and Turkey. These results should inform all OXIPRO partners about the potential regulatory opportunities and bottlenecks that may affect the use of enzymes.

Understanding the legal framework in Europe and the associated partner countries is crucial for the successful development and introduction of enzyme-based innovations within the framework of OXIPRO. This overview was prepared as part of Work Package 1 (WP1), Task 1.1: Stakeholder Identification and Engagement (Lead: SBSM; Contributors: REDINN, NORCE, LEITAT, all partners; M01-M48), and serves as a basis for supporting the overall project objectives. A key objective of OXIPRO is to engage stakeholders from the four strategic areas - research, business, policy and society - to maximise the impact and market readiness of the project results. Regulatory stakeholders, including national and European administrations, policy makers and security authorities, are at the centre of these efforts. Effectively identifying and engaging these stakeholders is critical not only for the diffusion and adoption of OXIPRO technologies, but also for overcoming the regulatory barriers that can hinder innovation.
DOI: 10.5281/zenodo.15433673
title: EC Regulations for the Use of Enzymes for Household Products and implementation in national laws of OXIPRO consortium member states

description: This survey-based analysis shows how EU-level regulations - such as REACH, CLP and the Food Enzymes Directives - are implemented at national level by the consortium's member states. It also sheds light on country-specific requirements such as national safety assessments or independent regulatory pathways in countries such as the UK and Turkey. These results should inform all OXIPRO partners about the potential regulatory opportunities and bottlenecks that may affect the use of enzymes.

Understanding the legal framework in Europe and the associated partner countries is crucial for the successful development and introduction of enzyme-based innovations within the framework of OXIPRO. This overview was prepared as part of Work Package 1 (WP1), Task 1.1: Stakeholder Identification and Engagement (Lead: SBSM; Contributors: REDINN, NORCE, LEITAT, all partners; M01-M48), and serves as a basis for supporting the overall project objectives. A key objective of OXIPRO is to engage stakeholders from the four strategic areas - research, business, policy and society - to maximise the impact and market readiness of the project results. Regulatory stakeholders, including national and European administrations, policy makers and security authorities, are at the centre of these efforts. Effectively identifying and engaging these stakeholders is critical not only for the diffusion and adoption of OXIPRO technologies, but also for overcoming the regulatory barriers that can hinder innovation.
DOI: 10.5281/zenodo.15517071
title: scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution - Training data

description: Scooby training data
DOI: 10.5281/zenodo.15517072
title: scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution - Training data

description: Scooby training data
DOI: 10.6084/m9.figshare.29149016
title: FFS

description: The code for training RF algorithm
DOI: 10.5281/zenodo.15517663
title: WinoWhat: A Parallel Corpus of Paraphrased WinoGrande Sentences with Common Sense Categorization

description: This is the dataset accompanying the paper "WinoWhat: A Parallel Corpus of Paraphrased WinoGrande Sentences withCommon Sense Categorization".

In this work, we evaluate LLMs' performance on Winograd Schema Challenges by paraphrasing the validation set of WinoGrande. We provide each instance with common sense category annotations.

The dataset structure is as follows:sentence: the original text as it appears in WinoGrandeparaphrased_sentence: the paired paraphrased textoption1 and option2: the two possible antecedents that can be filled in the _-tokenanswer: the correct optiongpt_category and gpt_category_names: the numerical and string representation of the common sense category/ categories attributed to the textin_original_experiment: whether this row was included in the original experiments or not
DOI: 10.5281/zenodo.15517664
title: WinoWhat: A Parallel Corpus of Paraphrased WinoGrande Sentences with Common Sense Categorization

description: This is the dataset accompanying the paper "WinoWhat: A Parallel Corpus of Paraphrased WinoGrande Sentences withCommon Sense Categorization".

In this work, we evaluate LLMs' performance on Winograd Schema Challenges by paraphrasing the validation set of WinoGrande. We provide each instance with common sense category annotations.

The dataset structure is as follows:sentence: the original text as it appears in WinoGrandeparaphrased_sentence: the paired paraphrased textoption1 and option2: the two possible antecedents that can be filled in the _-tokenanswer: the correct optiongpt_category and gpt_category_names: the numerical and string representation of the common sense category/ categories attributed to the textin_original_experiment: whether this row was included in the original experiments or not
DOI: 10.34740/kaggle/dsv/11957107
title: Trending Youtube Video Statistics (113 Countries)
DOI: 10.5281/zenodo.14697081
title: The principal components (PCs) datasets of the leaf and canopy levels used for full-spectrum SIF reconstruction in FSIF-iPCA method.

description: A principal components (PCs) dataset (640–850 nm) generated using a principal component analysis approach to reconstruct the shape of the reflectance spectrum for the leaf and canopy levels. For the leaf level, a novel SIF-free leaf spectra dataset (n = 849, species = 95) collected at three sites in Beijing, China during June and August 2023, was used. For the canopy level, a total of 305,640 SIF-free spectra generated using a SCOPE model based on the measured leaf reflectance and transmittance was employed.
DOI: 10.6084/m9.figshare.29149025
title: Source data for: Epigenetic activation of MTNR1A signaling via CRISPR/dCas9-Tet1 improves porcine oocyte maturation and embryo development

description: This dataset contains the source data supporting the manuscript's findings titled "Epigenetic activation of MTNR1A signaling via CRISPR/dCas9-Tet1 improves oocyte maturation: implications for human assisted reproduction."The data includes raw numerical values used to generate figures and tables, full uncropped gel images for Western blots, and detailed outputs from quantitative real-time PCR, bisulfite sequencing, and assays for oocyte maturation, cumulus expansion, embryo development, ROS/GSH levels, and gene/protein expression analyses.
DOI: 10.15468/dl.awmxna
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hopea gregaria Slooten"
 ]
}

 The dataset includes 23 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001463-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60871/ingpan/7m8gau
title: Kinetics of rehydration in smectite and its application to water resorption in bentonites

description: This dataset integrates gravimetric and FTIR-ATR spectroscopy measurements used in the publication Rybka K., Kuligiewicz A., Kaufhold S., Dohrmann R., Derkowski A. (2025) Kinetics of rehydration in smectite and its application to water resorption in bentonites. Applied Clay Science, 271, 107813. https://doi.org/10.1016/j.clay.2025.107813. The data were generated to investigate the rehydration behavior of homoionic smectites and natural bentonites following controlled dehydration. Gravimetric data were collected to track water resorption kinetics under varying temperatures. FTIR spectroscopy was employed to assess changes in layer charge via D₂O vibrational probing, offering insight into structural modifications during rehydration.
DOI: 10.15468/dl.7v9u5g
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Benin",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ipomoea beninensis Akoègn., Lisowski & Sinsin"
 ]
}

 The dataset includes 74 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001461-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b6eggk
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Grapholita inopinata (Heinrich, 1928)"
 ]
}

 The dataset includes 12 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001464-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p9gd5r
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Psophocarpus tetragonolobus (L.) DC."
 ]
}

 The dataset includes 39 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001469-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.avv8f3
title: Occurrence Download

description: A dataset containing 5343 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is INSDC Sequences",
 "Country is Croatia"
 ]
}

 The dataset includes 5343 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001466-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zj9hc4
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Angelo State University Herbarium",
 "Country is Croatia"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001470-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e2zy48
title: Occurrence Download

description: A dataset containing 1337614 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Divales cinctus (Gené, 1839), Tetraloniella fulvescens (Giraud, 1863), Anthidium wuestneii Mocsáry, 1887, Ophideres fullonica (Linnaeus, 1767), Ropalidia spatulata Vecht, 1962, Braunsapis mixta (Smith, 1852), Remigia frugalis (Fabricius, 1775), Agrotis biconica Kollar, 1844, Trigonodes hyppasia (Cramer, 1779), Chirosia flavipennis (Fallén, 1823), Anthomyia monilis (Meigen, 1826), Scymnus marinus (Mulsant, 1950), Chrysopa furcifera Okamoto, 1914, Baris kiboshi Nakane, 1963, Anisostira rugipennis (Lewis, 1896), Psilothrix protensa (Gené, 1836), Catocala praeclara Grote & Robinson, 1866, Temnostoma daochum (Walker, 1849), Rhetus arcius thia (Morisse, 1837), Phola octodecimguttata (Fabricius, 1775), Penthimia guttula Matsumura, 1912, Eumicromus confusus Nakahara, 1964, Eutrichosiphum pasaniae (Okajima, 1908), Caecilius oyamai Enderlein, 1906, Colpodes ishidai Ohkura & Shibata, 1963, Anoplolepis longipes Jerdon, 1851, Redivivoides karooensis Kuhlmann, 2012, Protandrena mexicanorum (Cockerell, 1896), Coelioxys pratti Crawford, 1914, Phyteuma globulariifolium Sternb. & Hoppe, Leptochilus eatoni (E.Saundas, 1905), Neochalcis hippotoides (Masi, 1916), Gasteruption merceti Kieffer, 1904, Elaphromyia incompleta Shiraki, 1933, Menispermum canadense L., Coprinus comatus (O.F.Müll.) Pers., Limonethe maurator (Brulle, 1846), Tussilago farfara L., Coprinopsis lagopus (Fr.) Redhead, Vilgalys & Moncalvo, Dryopteris intermedia (Muhl. ex Willd.) A.Gray, Viburnum plicatum Thunb., Dryopteris carthusiana (Vill.) H.P.Fuchs, Onoclea sensibilis L., Clitocybe robusta Peck, Andrena osmioides Cockerell, 1916, Stylopoda cephalica Smith, 1891, Evergestis frumentalis Linnaeus, 1761, Reuterista instabilis (Fieber, 1861), Centris discolor Smith, 1874, Eryngium yuccifolium var. synchaetum A.Gray ex J.M.Coult. & Rose)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1337614 records from 2861 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001462-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a7j2hp
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-87.51648 -1.652,-85.19303 -43.29395,-69.70339 -61.03121,-8.5193 -24.13915,-45.69444 15.20471,-77.44821 13.70483,-87.51648 -1.652))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Genea Vittad."
 ]
}

 The dataset includes 84 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007279-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh1380135.10fu
title: SH1380135.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1380136.10fu
title: SH1380136.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1380138.10fu
title: SH1380138.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1380140.10fu
title: SH1380140.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.