cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ye5f5t
title: Occurrence Download

description: A dataset containing 11233 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Archosargus probatocephalus (Walbaum, 1792)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 11233 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038847-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3712720_d1.v1
title: Additional file 1: of Challenges and predictors of exclusive breastfeeding among mothers attending the child welfare clinic at a regional hospital in Ghana: a descriptive cross-sectional study

description: Dataset for this study has been attached as an additional file in SPSS format. (SAV 9 kb)
DOI: 10.15468/dl.jmqemx
title: Occurrence Download

description: A dataset containing 277 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Scorzonera rosea Waldst. & Kit., Scorzonera rosea f. nana Gajic, Scorzonera purpurea var. rosea (Waldst. & Kit.) Hampe, Scorzonera rosea var. lanceolata Schur, Scorzonera rosea var. simplex Schur, Scorzonera rosea var. elata Schur, Tragopogon rhodanthus Sweet, Scorzonera rosea var. montana Schur, Scorzonera rosea f. rosea, Scorzonera rosea var. ramosa Schur, Scorzonera purpurea subsp. rosea (Waldst. & Kit.) Nyman, Podospermum roseum (Waldst. & Kit.) Gemeinholzer & Greuter, Scorzonera purpurea var. rosea (Waldst. & Kit.) Ledeb.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 277 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038848-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3712717_d2.v1
title: Additional file 2: of Intestinal dysbiosis in preterm infants preceding necrotizing enterocolitis: a systematic review and meta-analysis

description: Characteristics of included studies and results reported. This excel document describes the details the 14 included studies and results of alpha-, beta-diversity metrics and microbial profiles. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3712720_d1
title: Additional file 1: of Challenges and predictors of exclusive breastfeeding among mothers attending the child welfare clinic at a regional hospital in Ghana: a descriptive cross-sectional study

description: Dataset for this study has been attached as an additional file in SPSS format. (SAV 9 kb)
DOI: 10.6084/m9.figshare.c.3712717_d2
title: Additional file 2: of Intestinal dysbiosis in preterm infants preceding necrotizing enterocolitis: a systematic review and meta-analysis

description: Characteristics of included studies and results reported. This excel document describes the details the 14 included studies and results of alpha-, beta-diversity metrics and microbial profiles. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3712717_d3.v1
title: Additional file 3: of Intestinal dysbiosis in preterm infants preceding necrotizing enterocolitis: a systematic review and meta-analysis

description: Characteristics of studies included in the meta-analysis. This excel document describes the details of the data from 8 studies that were included in the meta-analysis. (XLSX 12Â kb)
DOI: 10.15468/dl.8m6gsj
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stenocarpella macrospora (Earle) B.Sutton"
 ]
}

 The dataset includes 145 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038849-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3712765_d11.v1
title: Additional file 8: Table S7. of Whole exome sequencing coupled with unbiased functional analysis reveals new Hirschsprung disease genes

description: Bioinformatics prediction of the functional impact of DNMs. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3712765_d12.v1
title: Additional file 9: Table S8. of Whole exome sequencing coupled with unbiased functional analysis reveals new Hirschsprung disease genes

description: Characteristics of 116 ENS-related HSCR candidate genes. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3712765_d11
title: Additional file 8: Table S7. of Whole exome sequencing coupled with unbiased functional analysis reveals new Hirschsprung disease genes

description: Bioinformatics prediction of the functional impact of DNMs. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3712765_d12
title: Additional file 9: Table S8. of Whole exome sequencing coupled with unbiased functional analysis reveals new Hirschsprung disease genes

description: Characteristics of 116 ENS-related HSCR candidate genes. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.4742236
title: Supplementary Material for the article "Outbreak trends associated with unpasteurized milk in the United States, 2006-2015"

description: Supplementary material for the article "Outbreak trends associated with unpasteurized milk in the United States, 2006-2015."  Includes 4 tables, 3 figures, and one PDF containing captions.  Tables include an Excel file containing outbreak data downloaded from the Center for Disease Control and Prevention. <br>
DOI: 10.6084/m9.figshare.22070102
title: Fungal Trunk Diseases Causing Decline of Apricot and Plum Trees in the Czech Republic

description: Supplementary files related to the phylogenetic analysis for the article titled: "Fungal Trunk Diseases Causing Decline of Apricot and Plum Trees in the Czech Republic" by Milan Spetik, Jakub Pecenka, Katerina Stuskova, Bara Stepanova, Ales Eichmeier, and Tomas Kiss. Plant Disease 2024 108:6, 1425-1436.https://doi.org/10.1094/PDIS-06-23-1080-SRContains alignment files and corresponding trees.
DOI: 10.6084/m9.figshare.c.3713884_d1
title: Additional file 1: of The most used medicinal plants by communities in Mahaboboka, Amboronabo, Mikoboka, Southwestern Madagascar

description: List of all medicinal plants encountered in the three communities (Mahaboboka, Amboronabo, Mikoboka) in South-western, Madagascar. (XLS 38 kb)
DOI: 10.6084/m9.figshare.c.3713884_d1.v1
title: Additional file 1: of The most used medicinal plants by communities in Mahaboboka, Amboronabo, Mikoboka, Southwestern Madagascar

description: List of all medicinal plants encountered in the three communities (Mahaboboka, Amboronabo, Mikoboka) in South-western, Madagascar. (XLS 38 kb)
DOI: 10.15468/dl.b8rhxq
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Thyreophora cynophila (Panzer, 1794)"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038850-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3713884_d2.v1
title: Additional file 2: of The most used medicinal plants by communities in Mahaboboka, Amboronabo, Mikoboka, Southwestern Madagascar

description: List of the most used medicinal plants in the three communities (Mahaboboka, Amboronabo, Mikoboka) in South-western, Madagascar. UV: Use value, FL: Fidelity Level. BCVP: Blood and Cardio-Vascular Problem, CS: Cranial System, DH: Dental Health, DSD: Digestive System Disorder, GA: General Ailments, ID: Infectious Diseases, MSS: Muscular Skeletal System, NS: Nervous System, PBP: Pregnancy, Birth and Puerperium, ReprS: Reproductive System, RespS: Respiratory System, SS: Sensory System, Vet: Veterinary. L: Leaves, YL: Young Leaves, Lt: Leafy twigs, S: Stem, YS: Young Stem, La: Latex, B: Bark, W: Whole plants, R: Roots, Rh: Rhizome, Bu: Buds, Fr: fruits, Se: Seeds. (XLS 98 kb)
DOI: 10.6084/m9.figshare.28052798
title: <b>Temp</b><b>oral variation of luminescence sensitivity and environmental changes during the Mid-late Holocene recorded in estuarine coastal deposits from South China</b>

description: Sediment granularity data; dating represents sample data.
DOI: 10.6084/m9.figshare.28052798.v1
title: <b>Temp</b><b>oral variation of luminescence sensitivity and environmental changes during the Mid-late Holocene recorded in estuarine coastal deposits from South China</b>

description: Sediment granularity data; dating represents sample data.
DOI: 10.6084/m9.figshare.28052798.v2
title: <b>Temp</b><b>oral variation of luminescence sensitivity and environmental changes during the Mid-late Holocene recorded in estuarine coastal deposits from South China</b>

description: Sediment granularity data; dating represents sample data.
DOI: 10.6084/m9.figshare.c.3713989_d2.v1
title: Additional file 2: of The birth of a human-specific neural gene by incomplete duplication and gene fusion

description: Measured HYDIN2 isoforms (.fasta). Fasta file of transcripts used for expression measurements. (FASTA 34Â kb)
DOI: 10.5281/zenodo.13903618
title: Acoustic pressure generated by low-intensity ultrasound activates mechano-sensitive receptor Ret in mouse colon
DOI: 10.6084/m9.figshare.c.3713989_d2
title: Additional file 2: of The birth of a human-specific neural gene by incomplete duplication and gene fusion

description: Measured HYDIN2 isoforms (.fasta). Fasta file of transcripts used for expression measurements. (FASTA 34Â kb)
DOI: 10.6084/m9.figshare.c.3713989_d3.v1
title: Additional file 3: of The birth of a human-specific neural gene by incomplete duplication and gene fusion

description: Molecular inversion probe (MIP) sequences used for exon sequencing (Table S9) and copy number genotyping (Table S10). (XLSX 74Â kb)
DOI: 10.6084/m9.figshare.c.3713989_d3
title: Additional file 3: of The birth of a human-specific neural gene by incomplete duplication and gene fusion

description: Molecular inversion probe (MIP) sequences used for exon sequencing (Table S9) and copy number genotyping (Table S10). (XLSX 74Â kb)
DOI: 10.6084/m9.figshare.c.3714916_d2
title: Additional file 2: of Exploring the floristic diversity of tropical Africa

description: An R script used to compute Nielsen estimator from a matrix of samples-species. (R 808 bytes)
DOI: 10.15468/dl.tzvr5f
title: Occurrence Download

description: A dataset listing the 27 species recorded in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Procyon lotor (Linnaeus, 1758)"
 ]
}

 The dataset's 27 records were derived from 373 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038795-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57754/fdat.je8ev-31w88
title: Gedichtkorpus Shakespeare

description: Consisting of the poem "When my Love swears that she is made of Truth" by William Shakespeare, this corpus serves as the basis for highlighting and making understandable the many ambiguities and textual difficulties found in the poem, by trying to analyse it with the combined tools of linguistics and literary studies.
description: Research carried out in work package A02 of the SFB 833.
DOI: 10.15468/dl.wf5k4w
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arctogadus glacialis (Peters, 1872)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 68 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038851-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3716134_d2.v1
title: Additional file 2: Figure S2. of Determining Clostridium difficile intra-taxa diversity by mining multilocus sequence typing databases

description: Polymorphisms throughout the length of the sequences for each housekeeping gen. (XLSX 97 kb)
DOI: 10.6084/m9.figshare.c.3716134_d2.v2
title: Additional file 2: Figure S2. of Determining Clostridium difficile intra-taxa diversity by mining multilocus sequence typing databases

description: Polymorphisms throughout the length of the sequences for each housekeeping gene. (XLSX 97 kb)
DOI: 10.6084/m9.figshare.c.3716134_d2
title: Additional file 2: Figure S2. of Determining Clostridium difficile intra-taxa diversity by mining multilocus sequence typing databases

description: Polymorphisms throughout the length of the sequences for each housekeeping gene. (XLSX 97 kb)
DOI: 10.6084/m9.figshare.c.3716134_d3.v1
title: Additional file 3: Table S1. of Determining Clostridium difficile intra-taxa diversity by mining multilocus sequence typing databases

description: Diversity indexes by each housekeeping gen. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3716134_d3.v2
title: Additional file 3: Table S1. of Determining Clostridium difficile intra-taxa diversity by mining multilocus sequence typing databases

description: Diversity indexes by each housekeeping gene. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3716134_d3
title: Additional file 3: Table S1. of Determining Clostridium difficile intra-taxa diversity by mining multilocus sequence typing databases

description: Diversity indexes by each housekeeping gene. (XLSX 10 kb)
DOI: 10.15468/dl.sz9d9a
title: Occurrence Download

description: A dataset containing 10219 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Scorzoneroides helvetica (Mérat) Holub, Leontodon helveticus Mérat, Leontodon pyrenaicus var. pinnatifidus W.D.J.Koch, Leontodon pyrenaicus var. ovalescens Murr, Hieracium squamosum E.H.L.Krause, Leontodon pyrenaicus subsp. helveticus (Mérat) Finch & P.D.Sell, Scorzoneroides pyrenaica var. helvetica (Mérat) B.Bock, Scorzoneroides pyrenaica subsp. helvetica (Mérat) Izuzq., Leontodon croceus var. pinnatifidus (W.D.J.Koch) Nyár., Leontodon pyrenaicus f. pinnatifidus (W.D.J.Koch) Hegi, Leontodon pyrenaicus f. ovalescens (Murr) Hegi)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 10219 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038852-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14512969
title: Hydrological Reanalysis for the Congo River Basin (1983-2022) unchanged by synoptic observations

description: The Congo River basin (CRB), the world's second-largest river system, is subject to extreme hydrological events that strongly impact its ecosystems and population. Here we present an unprecedented 40-year (1983-2022) hydrological reanalysis of CRB daily discharge. To develp this dataset, we employ a large-scale hydrologic-hydrodynamic model (MGB) with lake storage dynamics representation and a data assimilation (DA) technique using in-situ discharge and water level observations.

This is a variant of Wongchuig et al. (2023), which assimilates only the stations with the most complete data over the period 1981-2022, meaning that it is independent of synoptic observations occurring in certain periods such as radar altimetry since 2002 or in-situ observations of incomplete stations. This results in a more homogeneous performance over the time coverage for a proper trend analysis.

The original simulation period was from 1981 but the first two years were removed to avoid inconsistencies due to model initial conditions.
DOI: 10.5281/zenodo.14512970
title: Hydrological Reanalysis for the Congo River Basin (1983-2022) unchanged by synoptic observations

description: The Congo River basin (CRB), the world's second-largest river system, is subject to extreme hydrological events that strongly impact its ecosystems and population. Here we present an unprecedented 40-year (1983-2022) hydrological reanalysis of CRB daily discharge. To develp this dataset, we employ a large-scale hydrologic-hydrodynamic model (MGB) with lake storage dynamics representation and a data assimilation (DA) technique using in-situ discharge and water level observations.

This is a variant of Wongchuig et al. (2023), which assimilates only the stations with the most complete data over the period 1981-2022, meaning that it is independent of synoptic observations occurring in certain periods such as radar altimetry since 2002 or in-situ observations of incomplete stations. This results in a more homogeneous performance over the time coverage for a proper trend analysis.

The original simulation period was from 1981 but the first two years were removed to avoid inconsistencies due to model initial conditions.
DOI: 10.15468/dl.2wpwwx
title: Occurrence Download

description: A dataset containing 1849458 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "Country is France",
 "Geometry POLYGON((6.30595 42.9781,7.3606 43.55748,7.14667 43.77738,6.93274 43.87216,6.69628 43.84239,6.30595 43.69874,6.05448 43.50033,5.85556 43.22747,5.93063 43.00555,6.30595 42.9781))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "Year 2014-2024"
 ]
}

 The dataset includes 1849458 records from 662 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038823-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m8pepm
title: Occurrence Download

description: A dataset containing 3364 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arctozenus risso (Bonaparte, 1840)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 3364 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038853-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3718198_d7
title: Additional file 4 of Large-scale gene network analysis reveals the significance of extracellular matrix pathway and homeobox genes in acute myeloid leukemia: an introduction to the Pigengene package and its applications

description: Table S3. Enrichment in AML-associated genes. The enrichment of modules in genes associated with AML is reported as part of the online supplementary materials. Miller et al,. systematically surveyed 25 published reports of gene expression profiling in AML [81]. We used this survey to score the modules based on their know association with AML. For instance, the # of Reported Genes-2 and Score-2 columns respectively report the number and the percentage of genes in each module that were reported to be related to AML in at least 2 studies according to Miller et al,. survey. The Module ID, Module Size, and the most overrepresented pathway in each module are also reported. These data are plotted in Additional file 1: Figure S4. (XLS 39.5 kb)
DOI: 10.6084/m9.figshare.c.3718228_d2
title: Additional file 2: of SNP by SNP by environment interaction network of alcoholism

description: Table S1. This file provides the list of SNPs with CMH test p-value &lt; 0.0005. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.c.3718198_d7.v1
title: Additional file 4 of Large-scale gene network analysis reveals the significance of extracellular matrix pathway and homeobox genes in acute myeloid leukemia: an introduction to the Pigengene package and its applications

description: Table S3. Enrichment in AML-associated genes. The enrichment of modules in genes associated with AML is reported as part of the online supplementary materials. Miller et al,. systematically surveyed 25 published reports of gene expression profiling in AML [81]. We used this survey to score the modules based on their know association with AML. For instance, the # of Reported Genes-2 and Score-2 columns respectively report the number and the percentage of genes in each module that were reported to be related to AML in at least 2 studies according to Miller et al,. survey. The Module ID, Module Size, and the most overrepresented pathway in each module are also reported. These data are plotted in Additional file 1: Figure S4. (XLS 39.5 kb)
DOI: 10.6084/m9.figshare.c.3718198_d8.v1
title: Additional file 5 of Large-scale gene network analysis reveals the significance of extracellular matrix pathway and homeobox genes in acute myeloid leukemia: an introduction to the Pigengene package and its applications

description: Table S4. Eigengenes. The eigengenes computed for all gene modules are available as part of the online supplementary materials. Each row reports the values for a sample and columns correspond to modules. The first sheet was computed using moduleEigengenes function from WGCNA package, which applied PCA on the gene expression in the MILE dataset. The second sheet shows the inferred expression of these 33 eigengenes in the BCCA dataset (Methods). Module zero contains the set of â  outlierâ   genes that did not correlated with each other or with the rest of the genome. WGCNA could not confidently assign them to any module and we did not use them in our analysis. (XLS 334 kb)
DOI: 10.6084/m9.figshare.c.3718228_d3.v1
title: Additional file 3: of SNP by SNP by environment interaction network of alcoholism

description: Table S2. This file provides the complete list of interactions in the SNPxSNPxE network. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.c.3718228_d3
title: Additional file 3: of SNP by SNP by environment interaction network of alcoholism

description: Table S2. This file provides the complete list of interactions in the SNPxSNPxE network. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.c.3718198_d8
title: Additional file 5 of Large-scale gene network analysis reveals the significance of extracellular matrix pathway and homeobox genes in acute myeloid leukemia: an introduction to the Pigengene package and its applications

description: Table S4. Eigengenes. The eigengenes computed for all gene modules are available as part of the online supplementary materials. Each row reports the values for a sample and columns correspond to modules. The first sheet was computed using moduleEigengenes function from WGCNA package, which applied PCA on the gene expression in the MILE dataset. The second sheet shows the inferred expression of these 33 eigengenes in the BCCA dataset (Methods). Module zero contains the set of â  outlierâ   genes that did not correlated with each other or with the rest of the genome. WGCNA could not confidently assign them to any module and we did not use them in our analysis. (XLS 334 kb)