cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7570778
title: EUREKA Task 1.3 validation survey analysis

description: Curated results and analysis of the WP1 validation survey, including the figures for the corresponding deliverable and any resulting publications.
DOI: 10.5281/zenodo.7570779
title: EUREKA Task 1.3 validation survey analysis

description: Curated results and analysis of the WP1 validation survey, including the figures for the corresponding deliverable and any resulting publications.
DOI: 10.5281/zenodo.7571047
title: EUREKA regional users tests for the pilot EU-FarmBook

description: ZIP archive containing background info, script and questions used by EUREKA partners who conducted the user-test interviews in the 4 EU macroregions, plus their reports (the results) in an Excel file.
DOI: 10.5281/zenodo.7571048
title: EUREKA regional users tests for the pilot EU-FarmBook

description: ZIP archive containing background info, script and questions used by EUREKA partners who conducted the user-test interviews in the 4 EU macroregions, plus their reports (the results) in an Excel file.
DOI: 10.5281/zenodo.7571028
title: EUREKA WP2: Regional Interview Transcripts

description: ZIP file containing transcripts in English of 40 interviews conducted with farmers, foresters, advisors and other professionals across Europe by several EUREKA partners in the summer of 2020. The focus of the interviews was to discuss the (digital) information needs of potential users of the EU-FarmBook knowledge platform. This work informed the development of a set of representative 'user personas' and associated 'user journeys' to aid in the design of the EU-FarmBook. See Deliverable 2.2 for a full report of the findings.
DOI: 10.5281/zenodo.7571027
title: EUREKA WP2: Regional Interview Transcripts

description: ZIP file containing transcripts in English of 40 interviews conducted with farmers, foresters, advisors and other professionals across Europe by several EUREKA partners in the summer of 2020. The focus of the interviews was to discuss the (digital) information needs of potential users of the EU-FarmBook knowledge platform. This work informed the development of a set of representative 'user personas' and associated 'user journeys' to aid in the design of the EU-FarmBook. See Deliverable 2.2 for a full report of the findings.
DOI: 10.5281/zenodo.7571019
title: EUREKA WP1 validation survey results

description: Raw results of the EUREKA project survey on how data and knowledge are stored and shared in Horizon 2020 multi-actor projects in agriculture and forestry.
DOI: 10.5281/zenodo.7571020
title: EUREKA WP1 validation survey results

description: Raw results of the EUREKA project survey on how data and knowledge are stored and shared in Horizon 2020 multi-actor projects in agriculture and forestry.
DOI: 10.5281/zenodo.7571003
title: EUREKA Task 1.3 validation survey analysis

description: Curated results and analysis of the WP1 validation survey, including the figures for the corresponding deliverable and any resulting publications.
DOI: 10.5281/zenodo.7571004
title: EUREKA Task 1.3 validation survey analysis

description: Curated results and analysis of the WP1 validation survey, including the figures for the corresponding deliverable and any resulting publications.
DOI: 10.5281/zenodo.7570990
title: 2020_04_08_Percentages_of_MA_projects

description: Dataset related to WP1 'Knowledge mapping and co-creating best practices' INTERVIEWS with multi-actor projects (MAPs)
DOI: 10.5281/zenodo.7570989
title: 2020_04_08_Percentages_of_MA_projects

description: Dataset related to WP1 'Knowledge mapping and co-creating best practices' INTERVIEWS with multi-actor projects (MAPs)
DOI: 10.6084/m9.figshare.21960356
title: Raw data photomorphogenesis Synechocysits 6803.rar

description: <strong>Raw data for the manuscript:</strong> <br> <em>Photomorphogenesis in Synechocystis sp. PCC 6803 predicts growth limitations in spectral niches for type 1 chromatic acclimators </em> Tomáš Zavřel1✉, Anna Segečová1, László Kovács2, Martin Lukeš3, Zoltán Novák4, Milán Szabó2, Boglárka Somogyi4, Ondřej Prášil3, Jan Červený1, Gábor Bernát4✉ <br> 1Global Change Research Institute of the Czech Academy of Sciences, Brno, Czechia 2Biological Research Centre, Eötvös Loránd Research Network (ELKH), Szeged, Hungary 3Centre Algatech, Institute of Microbiology of the Czech Academy of Sciences, Třeboň, Czechia 4Balaton Limnological Research Institute, Eötvös Loránd Research Network (ELKH), Tihany, Hungary
DOI: 10.6084/m9.figshare.21960389.v1
title: gene annotation of Apis cerana japonica

description: The homologous genes were searched for in eight reference organisms (<em>Apis. mellifera</em>, <em>Homo sapiens</em>, <em>Mus musculus</em>, <em>Caenorhabditis elegans</em>, <em>Drosophila. melanogaster</em>, <em>Bombyx mori</em>, <em>Bombus terrestris</em>, and <em>Nasonia vitripennis</em>) or UniProtKB.
DOI: 10.5281/zenodo.7573133
title: Wheat disease images (small dataset)

description: 999 wheat disease images, including yellow rust, brown rust, septoria, mildew and healthy leaves taken in realistic growth conditions. This is a small subset of the full dataset containing 19,172 images over the five categories. The full dataset is available on request from James Brown, james.brown@jic.ac.uk.
DOI: 10.5281/zenodo.7573132
title: Wheat disease images (small dataset)

description: 999 wheat disease images, including yellow rust, brown rust, septoria, mildew and healthy leaves taken in realistic growth conditions. This is a small subset of the full dataset containing 19,172 images over the five categories. The full dataset is available on request from James Brown, james.brown@jic.ac.uk.
DOI: 10.5281/zenodo.7573131
title: Data for manuscript "Synteny identifies reliable orthologs for phylogenomics and comparative genomics of the Brassicaceae"

description: Data and code for manuscript "Synteny identifies reliable orthologs for phylogenomics and comparative genomics of the Brassicaceae". Preprint available at bioRxiv: https://doi.org/10.1101/2022.09.07.506897.
description: This work was supported by the German Research Foundation [HO 6443/1 to N.W.].
description: {"references": ["https://doi.org/10.1101/2022.09.07.506897"]}
DOI: 10.5281/zenodo.7573130
title: Data for manuscript "Synteny identifies reliable orthologs for phylogenomics and comparative genomics of the Brassicaceae"

description: Data and code for manuscript "Synteny identifies reliable orthologs for phylogenomics and comparative genomics of the Brassicaceae". Preprint available at bioRxiv: https://doi.org/10.1101/2022.09.07.506897.
description: This work was supported by the German Research Foundation [HO 6443/1 to N.W.].
description: {"references": ["https://doi.org/10.1101/2022.09.07.506897"]}
DOI: 10.25403/upresearchdata.21710294
title: Teachers’ experiences of the Bachelor of Education Honours, learner support

description: The data of this qualitative phenomenological study was presented for the publication of a research dissertation. The purposive and conveniently selected participants enrolled in the BEd Honours (Learning Support) distance education programme participated in the data collection. In adherence to ethical requirements from the University of Pretoria, the data collection process involved telephonic semi-structured interviews of eight participants. The data was analysed using a thematic data analysis method and a software called AtlasTi 8. Codes were generated and themes were formed from the sub-themes of the study. The data provided four themes and pseudonyms of participants were utilized in the documents in accordance to ethical research guidelines.
DOI: 10.25403/upresearchdata.21710294.v1
title: Teachers’ experiences of the Bachelor of Education Honours, learner support

description: The data of this qualitative phenomenological study was presented for the publication of a research dissertation. The purposive and conveniently selected participants enrolled in the BEd Honours (Learning Support) distance education programme participated in the data collection. In adherence to ethical requirements from the University of Pretoria, the data collection process involved telephonic semi-structured interviews of eight participants. The data was analysed using a thematic data analysis method and a software called AtlasTi 8. Codes were generated and themes were formed from the sub-themes of the study. The data provided four themes and pseudonyms of participants were utilized in the documents in accordance to ethical research guidelines.
DOI: 10.5281/zenodo.7273617
title: Alternative splicing analysis benchmark with DICAST

description: <strong>Alternative splicing is a major contributor to transcriptome and proteome diversity in health and disease. A plethora of tools have been developed for studying alternative splicing in RNA-seq data. Previous benchmarks focused on isoform quantification and mapping. They neglected event detection tools, which arguably provide the most detailed insights into the alternative splicing process. DICAST offers a modular and extensible framework for analysing alternative splicing, integrating eleven splice-aware mapping and eight event detection tools. We benchmark all tools extensively on simulated as well as whole blood RNA-seq data. STAR and HISAT2 demonstrated the best balance between performance and run time. The performance of event detection tools varies widely, with no tool outperforming all others. DICAST allows researchers to employ a consensus approach to consider the most successful tools jointly for robust event detection. Furthermore, we propose the first reporting standard to unify existing formats and to guide future tool development. </strong>
DOI: 10.5281/zenodo.7273616
title: Alternative splicing analysis benchmark with DICAST

description: <strong>Alternative splicing is a major contributor to transcriptome and proteome diversity in health and disease. A plethora of tools have been developed for studying alternative splicing in RNA-seq data. Previous benchmarks focused on isoform quantification and mapping. They neglected event detection tools, which arguably provide the most detailed insights into the alternative splicing process. DICAST offers a modular and extensible framework for analysing alternative splicing, integrating eleven splice-aware mapping and eight event detection tools. We benchmark all tools extensively on simulated as well as whole blood RNA-seq data. STAR and HISAT2 demonstrated the best balance between performance and run time. The performance of event detection tools varies widely, with no tool outperforming all others. DICAST allows researchers to employ a consensus approach to consider the most successful tools jointly for robust event detection. Furthermore, we propose the first reporting standard to unify existing formats and to guide future tool development. </strong>
description: The archives contain Rscripts used to simulate the data sets; description of AS events and resulting genome annotations in gtf and gff3 formats
DOI: 10.5281/zenodo.7273967
title: Alternative splicing analysis benchmark with DICAST

description: <strong>Alternative splicing is a major contributor to transcriptome and proteome diversity in health and disease. A plethora of tools have been developed for studying alternative splicing in RNA-seq data. Previous benchmarks focused on isoform quantification and mapping. They neglected event detection tools, which arguably provide the most detailed insights into the alternative splicing process. DICAST offers a modular and extensible framework for analysing alternative splicing, integrating eleven splice-aware mapping and eight event detection tools. We benchmark all tools extensively on simulated as well as whole blood RNA-seq data. STAR and HISAT2 demonstrated the best balance between performance and run time. The performance of event detection tools varies widely, with no tool outperforming all others. DICAST allows researchers to employ a consensus approach to consider the most successful tools jointly for robust event detection. Furthermore, we propose the first reporting standard to unify existing formats and to guide future tool development. </strong>
DOI: 10.5281/zenodo.7573144
title: Alternative splicing analysis benchmark with DICAST

description: <strong>Alternative splicing is a major contributor to transcriptome and proteome diversity in health and disease. A plethora of tools have been developed for studying alternative splicing in RNA-seq data. Previous benchmarks focused on isoform quantification and mapping. They neglected event detection tools, which arguably provide the most detailed insights into the alternative splicing process. DICAST offers a modular and extensible framework for analysing alternative splicing, integrating eleven splice-aware mapping and eight event detection tools. We benchmark all tools extensively on simulated as well as whole blood RNA-seq data. STAR and HISAT2 demonstrated the best balance between performance and run time. The performance of event detection tools varies widely, with no tool outperforming all others. DICAST allows researchers to employ a consensus approach to consider the most successful tools jointly for robust event detection. Furthermore, we propose the first reporting standard to unify existing formats and to guide future tool development. </strong>
description: The archives contain Rscripts used to simulate the data sets; description of AS events and resulting genome annotations in gtf and gff3 formats
DOI: 10.34740/kaggle/dsv/4901012
title: Flipkart Products Review Dataset
DOI: 10.6084/m9.figshare.21960362.v1
title: Circular citizens in St.Petersburg, Russia

description: The data was collected with PPGIS "Mapsurvey" in St.Petersburg in 2023. 121 participants answered 25 questions
DOI: 10.6084/m9.figshare.21960362
title: Circular citizens in St.Petersburg, Russia

description: The data was collected with PPGIS "Mapsurvey" in St.Petersburg in 2023. 121 participants answered 25 questions
DOI: 10.6084/m9.figshare.21960362.v3
title: Circular citizens in St.Petersburg, Russia

description: The data was collected with PPGIS "Mapsurvey" in St.Petersburg in 2023. 121 participants answered 25 questions
DOI: 10.6084/m9.figshare.21960362.v2
title: Circular citizens in St.Petersburg, Russia

description: The data was collected with PPGIS "Mapsurvey" in St.Petersburg in 2023. 121 participants answered 25 questions
DOI: 10.21227/dhqm-y521
title: DATA: Finding Ground-based Radars in SAR images

description: Synthetic Aperture Radar (SAR) satellite images are used increasingly more for Earth observation. While SAR images are useable in most conditions, they occasionally experience image degradation due to interfering signals from external radars, called Radio Frequency Interference (RFI). RFI affected images are often discarded in further analysis or pre-processed to remove the RFI. However, few on-ground radars can cause RFI in SAR images and such information can thus increase domain awareness greatly over both land and sea, where, e.g., localizing and characterizing RFI signals in the ocean could help classify otherwise overlooked ships. The aim of the current study is to detect and localize RFI signals automatically in Sentinel-1 level- 1 images and further characterize the on-ground radar. The spatial structure of RFI signals vary greatly. A convolutional autoencoder was therefore developed to reconstruct RFI-free Sentinel-1 images. Conversely, RFI-affected images could not be well reconstructed. Anomalous heatmaps were then developed to automatically detect and localize RFI anomalies in the im- ages under varying environmental and geographical conditions whereafter the external radar characteristics were extracted manually from Sentinel-1 level-0 data. We could consequently classify and localize RFI signals believed to originate from both stationary radars and ship-borne radars. We further argue that the calculated ship-borne radar characteristics correspond to those of air-surveillance radars. Empirically, the method showed better detection results than those of previous studies. Our study shows that more information can be extracted from certain detected objects, such as ships, from SAR images.
DOI: 10.6084/m9.figshare.19925381.v1
title: Egmont2020

description: ROV data from the cruise
DOI: 10.25578/dqbxo5
title: Characterization test over second life high capacity lithium-ion cells

description: This dataset contains characterization data of a second life batteries extracted from a real electric vehicle.
DOI: 10.25578/dqbxo5/nodtmi
title: 20220126_0933_BUGE329_B2_T25_caraccomplete.csv

description: Characterization of the second life battery at 25°C
DOI: 10.25578/dqbxo5/ukphsi
title: 20220204_1403_BUGE329_B2_T40_carac_initiale.mdb.csv

description: Characterization of the second life battery at 40°C
DOI: 10.25578/dqbxo5/sr9gan
title: 20220121_2041_BUGE329_B2_T0_caraccomplete.csv

description: Characterization of the second life battery at 0°C
DOI: 10.25578/dqbxo5/05uay7
title: Data_paper_second_life_batteries_characterization_test.pdf

description: Data paper describing the characterization test realized over second life batteries at 0,25 and 40°C
DOI: 10.25578/dqbxo5/nnhayi
title: Data_paper_second_life_batteries_characterization_test.pdf

description: Data paper describing the characterization test realized over second life batteries at 0,25 and 40°C
DOI: 10.25578/dqbxo5/tquexp
title: README.txt

description: :unav
DOI: 10.25578/dqbxo5/2kbb2y
title: Second Life Batteries in a Mobile Charging Station - Experimental Performance Assessment

description: :unav
DOI: 10.6084/m9.figshare.19925381.v2
title: Egmont2020

description: ROV data from the cruise
DOI: 10.5281/zenodo.7573157
title: Data for paper Linear and Non-linear Modelling of Bromate Formation During Ozonation of Surface Water in Drinking Water Production

description: Data for journal paper
DOI: 10.5281/zenodo.7573156
title: Data for paper Linear and Non-linear Modelling of Bromate Formation During Ozonation of Surface Water in Drinking Water Production

description: Data for journal paper
DOI: 10.6084/m9.figshare.19925381.v3
title: Egmont2020

description: ROV data from the cruise
DOI: 10.34740/kaggle/dsv/4901093
title: COVID Vaccination in World (updated daily)
DOI: 10.5281/zenodo.7572248
title: Data from Time since liver transplantation and immunosuppression withdrawal outcomes: a systematic review with individual patient data meta-analysis

description: This record provides one CSV file containing anonymized individual patient data (IPD) of pre-withdrawal times (in days) of liver transplant recipients that underwent immunosuppression (IS) withdrawal. Collection and publication of anonymized data was approved by the Ethics Committee Northwest and Central Switzerland. Patients of 15 primary studies are stratified by successfully reaching the state of IS-free operational tolerance (OT) or by developing signs of immunological rejection (non-OT).
description: {"references": ["Christian Appenzeller-Herzog, Tim Mathes, Julien Vionnet. Time since liver transplantation and immunosuppression withdrawal outcomes: a systematic review with meta-analysis. PROSPERO 2021 CRD42021272995 Available from: https://www.crd.york.ac.uk/prospero/display_record.php?ID=CRD42021272995"]}
DOI: 10.5281/zenodo.7572247
title: Data from Time since liver transplantation and immunosuppression withdrawal outcomes: a systematic review with individual patient data meta-analysis

description: This record provides one CSV file containing anonymized individual patient data (IPD) of pre-withdrawal times (in days) of liver transplant recipients that underwent immunosuppression (IS) withdrawal. Collection and publication of anonymized data was approved by the Ethics Committee Northwest and Central Switzerland. Patients of 15 primary studies are stratified by successfully reaching the state of IS-free operational tolerance (OT) or by developing signs of immunological rejection (non-OT).
description: {"references": ["Christian Appenzeller-Herzog, Tim Mathes, Julien Vionnet. Time since liver transplantation and immunosuppression withdrawal outcomes: a systematic review with meta-analysis. PROSPERO 2021 CRD42021272995 Available from: https://www.crd.york.ac.uk/prospero/display_record.php?ID=CRD42021272995"]}
DOI: 10.24377/ljmu.d.00000136
title: Opioid Prescribing data for CNCP in LCCG 2016-2018

description: Background: Treating Chronic Non-Cancer Pain (CNCP) with long-term, high dose and more potent opioids puts patients at increased risk of harm, whilst providing limited pain relief. Socially deprived areas mapped from Index of Multiple Deprivation (IMD) scores show higher rates of high dose, strong opioid prescribing compared to more affluent areas. Objective: To explore if opioid prescribing is higher in more deprived areas of Liverpool (UK) and assess the incidence of high dose prescribing to improve clinical pathways for opioid weaning. Design and Setting: This retrospective observational study used primary care practice and patient level opioid prescribing data for N=30,474 CNCP patients across Liverpool Clinical Commissioning Group (LCCG) between August 2016 and August 2018. Method: A Defined Daily Dose (DDD) was calculated for each patient prescribed opioids. DDD was converted into a Morphine Equivalent Dose (MED) and patients stratified according to high (≥120mg) MED cut off. The association between prescribing and deprivation was analysed by linking GP practice codes and IMD scores across LCCG. Results: 3.5% of patients were prescribed an average dose above 120mg MED/day. Patients prescribed long-term, high dose, strong opioids were more likely to be female, aged 60+, prescribed three opioids and reside in the North of Liverpool where there is a higher density of areas in the IMD most deprived deciles. Conclusion: A small but significant proportion of CNCP patients across Liverpool are currently prescribed opioids above the recommended dose threshold of 120mg MED. Identification of fentanyl as a contributor to high dose prescribing resulted in changes to prescribing practice, and reports from NHS pain clinics that fewer patients require tapering from fentanyl. In conclusion, higher rates of high dose opioid prescribing continue to be evident in more socially deprived areas further increasing health inequalities.
description: Retrospective analysis of existing data
DOI: 10.6084/m9.figshare.21960512
title: The isotopic signatures (δ13C and δ15N) of the Neocallichirus species and its food sources

description: This dataset gives additional data to support the results in a paper (seike and Curran)
DOI: 10.6084/m9.figshare.21960512.v1
title: The isotopic signatures (δ13C and δ15N) of the Neocallichirus species and its food sources

description: This dataset gives additional data to support the results in a paper (seike and Curran)
DOI: 10.5517/ccdc.csd.cc2dcrn6
title: CCDC 2215838: Experimental Crystal Structure Determination

description: Related Article: Jin-Fa Chen, Qing-Xiu Gao, Lijie Liu, Pangkuan Chen, Tai-Bao Wei|2023|Chemical Science|14|987|doi:10.1039/D2SC06000K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ddgny
title: CCDC 2216520: Experimental Crystal Structure Determination

description: Related Article: Joseph C. Abell, Christian P. Bold, Laia Vicens, Tom Jentsch, Noelia Velasco Perez, Jasper L. Tyler, Robert N. Straker, Adam Noble, Varinder K. Aggarwal|2023|Org.Lett.|25|400|doi:10.1021/acs.orglett.2c04095
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.