cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22023/mdx.5576524
title: Dot pattern raw data for Japanese textile designs

description: Analysis of dot patterning on katagami. Excel files containing numerical descriptions of cut elements of katagami identified using imageJ software.<br><br>Each spreadsheet contains the raw, unedited data and a 'cleaned' set from which elements which are not drilled dot patterning have been removed. The cleaned dataset also contains fields calculating dot distance (between nearest points), identification of row number of nearest point and angle of elevation between nearest points. Distance and angle frequencies are plotted on separate sheets as histograms.<br><br>Filenames are the accession number of the katagami in the MoDA collection.<br><br>Part of the ACE-funded project: Katagami in practice: Japanese stencils in the art school<br>
DOI: 10.6084/m9.figshare.5576530
title: Perennial springs provide information to predict low flows in mountain basins

description: A new method for estimating low flows in ungauged rivers from minimum discharge of perennial springs is proposed. This spring-based approach (SBA) is tested in 21 catchments from the northern Apennines, Italy. First, the hydrogeological behaviour of each geological formation and superficial deposit is related to the spatial distribution and discharge of perennial springs in a test area using a Bayesian approach, weight of evidence (WoE). Second, the observed river flow exceeded for 95% of the observation period is related to the type of geological formations outcropping within the catchment. Finally, the q95 low flows are estimated from the WoE weights. The SBA performance is assessed by leave-one-out cross-validation and compared with the results of a multiple regression (MR) model that accounts for selected catchment characteristics, but no springs. The results show that the SBA outperforms MR. The better performance of the SBA may be related to its ability to capture bedrock characteristics, which are the main controls of low flows in the study area.
DOI: 10.6084/m9.figshare.5576530.v1
title: Perennial springs provide information to predict low flows in mountain basins

description: A new method for estimating low flows in ungauged rivers from minimum discharge of perennial springs is proposed. This spring-based approach (SBA) is tested in 21 catchments from the northern Apennines, Italy. First, the hydrogeological behaviour of each geological formation and superficial deposit is related to the spatial distribution and discharge of perennial springs in a test area using a Bayesian approach, weight of evidence (WoE). Second, the observed river flow exceeded for 95% of the observation period is related to the type of geological formations outcropping within the catchment. Finally, the q95 low flows are estimated from the WoE weights. The SBA performance is assessed by leave-one-out cross-validation and compared with the results of a multiple regression (MR) model that accounts for selected catchment characteristics, but no springs. The results show that the SBA outperforms MR. The better performance of the SBA may be related to its ability to capture bedrock characteristics, which are the main controls of low flows in the study area.
DOI: 10.6084/m9.figshare.5576500
title: Data set for Cartwright and Stepanova (2017)

description: Data to go alongside the paper 'Efficiency in a Forced Contribution Threshold Public Good Game' published in <i>International Journal of Game Theory</i>. There were 155 subjects split over 9 sessions and 4 treatments.
DOI: 10.6084/m9.figshare.5576497
title: Images for Sturgeon counting

description: These are the orignal images for training the counting software which was used for Sturgeon counting.
DOI: 10.6084/m9.figshare.5576500.v2
title: Data set for Cartwright and Stepanova (2017)

description: Data to go alongside the paper 'Efficiency in a Forced Contribution Threshold Public Good Game' published in <i>International Journal of Game Theory</i>. There were 155 subjects split over 9 sessions and 4 treatments.
DOI: 10.22023/mdx.5576494
title: katagami dot patterning plots

description: Plots of katagami used for pattern analysis. Files with the extension .ggb open using the free software GeoGebra (available from www.geogebra.org/home). The .ggb files show the centroids of drilled or punched dots computed using imageJ analysis software to identify all cut elements with the data then manually edited in Excel to remove non-dot elements. Tiff files show the associated imageJ plot of all identified cut elements before manual editing. <br>Filenames are the accession number of the katagami, those with a K prefix are in the collection of MoDA; those without, in the collection of ULITA. .ggb filenames with a letter suffix indicate that the plot of a single katagami has been split over two or more files because of dataset size constraints within GeoGebra.<br><br>Part of the ACE-funded project: Katagami in practice: Japanese stencils in the art school<br>
DOI: 10.22023/mdx.5576494.v1
title: katagami dot patterning plots

description: Plots of katagami used for pattern analysis. Files with the extension .ggb open using the free software GeoGebra (available from www.geogebra.org/home). The .ggb files show the centroids of drilled or punched dots computed using imageJ analysis software to identify all cut elements with the data then manually edited in Excel to remove non-dot elements. Tiff files show the associated imageJ plot of all identified cut elements before manual editing. <br>Filenames are the accession number of the katagami, those with a K prefix are in the collection of MoDA; those without, in the collection of ULITA. .ggb filenames with a letter suffix indicate that the plot of a single katagami has been split over two or more files because of dataset size constraints within GeoGebra.<br><br>Part of the ACE-funded project: Katagami in practice: Japanese stencils in the art school<br>
DOI: 10.6084/m9.figshare.5576491
title: Dataset for: Urine Sodium Concentrations are Predictive of Hypoadrenocorticism in Hyponatremic Dogs: A Retrospective Pilot Study

description: Objectives: The purpose of this study was to determine if a urine sodium concentration could be used to rule out hypoadrenocorticism as the cause of hyponatremia in hyponatremic dogs. In the hyponatremic state, sodium should be conserved at the level of the renal tubule; with expected urine sodium concentrations are &lt; 30 mmol/L. However, in the case of aldosterone deficiency due to hypoadrenocorticism, sodium is inappropriately lost into the urine, resulting in urine sodium concentrations &gt; 30 mmol/L. Methods: Medical records of hyponatremic dogs (serum sodium &lt; 135 mmol/L) that had urine sodium concentrations measured were reviewed. Twenty hyponatremic dogs were included; 11 with a diagnosisdiagnosed with of classical hypoadrenocorticism and 9 with non-adrenal causes of hyponatremia. A Wilcoxon sum rank test was used to compare results between groups. Results: No dog with hypoadrenocorticism had a urine sodium concentration &lt; 30mmol/L. Urine sodium concentration in dogs with hypoadrenocorticism was significantly higher (median 103 mmol/L, range: 41-225), than in dogs with non-adrenal illness (median: 10 mmol/L, range: 2-86) (p &lt; 0.0005). Serum sodium concentrations were not significantly different between dogs with hypoadrenocorticism and dogs with non-adrenal illness. Clinical Significance: These results suggest that urine sodium concentrations can be used to prioritize a differential diagnosis of hypoadrenocorticism in hyponatremic dogs. A urine sodium concentration &lt; 30 mmol/L in a hyponatremic dog makes classical hypoadrenocorticism an unlikely cause of the hyponatremia. Due to the small sample size in this study, results should be interpreted with caution. A larger follow-up study would be valuable.
DOI: 10.6084/m9.figshare.5576500.v1
title: Data for Forced Contribution Threshold Public Good Game

description: Data to go alongside the paper 'Efficiency in a Forced Contribution Threshold Public Good Game' published in <i>International Journal of Game Theory</i>. There were 155 subjects split over 9 sessions and 4 treatments.
DOI: 10.6084/m9.figshare.5576479
title: Interaction mechanism of insulin with ZnO nanoparticles by replica exchange molecular dynamics simulation

description: The interaction of ZnO nanoparticles with biological molecules such as proteins is one of the most important and challenging problems in molecular biology. Molecular dynamics (MD) simulations are useful technique for understating the mechanism of various interactions of proteins and nanoparticles. In the present work, the interaction mechanism of insulin with ZnO nanoparticles was studied. Simulation methods including MD and replica exchange molecular dynamics (REMD) and their conditions were surveyed. According to the results obtained by REMD simulation, it was found that insulin interacts with ZnO nanoparticle surface via its polar and charged amino acids. Unfolding insulin at ZnO nanoparticle surface, the terminal parts of its chains play the main role. Due to the linkage between chain of insulin and chain of disulfide bonds, opposite directional movements of N terminal part of chain A (toward nanoparticle surface) and N termini of chain B (toward solution) make insulin unfolding. In unfolding of insulin at this condition, its helix structures convert to random coils at terminal parts chains.
DOI: 10.6084/m9.figshare.5576491.v1
title: Dataset for: Urine Sodium Concentrations are Predictive of Hypoadrenocorticism in Hyponatremic Dogs: A Retrospective Pilot Study

description: Objectives: The purpose of this study was to determine if a urine sodium concentration could be used to rule out hypoadrenocorticism as the cause of hyponatremia in hyponatremic dogs. In the hyponatremic state, sodium should be conserved at the level of the renal tubule; with expected urine sodium concentrations are &lt; 30 mmol/L. However, in the case of aldosterone deficiency due to hypoadrenocorticism, sodium is inappropriately lost into the urine, resulting in urine sodium concentrations &gt; 30 mmol/L. Methods: Medical records of hyponatremic dogs (serum sodium &lt; 135 mmol/L) that had urine sodium concentrations measured were reviewed. Twenty hyponatremic dogs were included; 11 with a diagnosisdiagnosed with of classical hypoadrenocorticism and 9 with non-adrenal causes of hyponatremia. A Wilcoxon sum rank test was used to compare results between groups. Results: No dog with hypoadrenocorticism had a urine sodium concentration &lt; 30mmol/L. Urine sodium concentration in dogs with hypoadrenocorticism was significantly higher (median 103 mmol/L, range: 41-225), than in dogs with non-adrenal illness (median: 10 mmol/L, range: 2-86) (p &lt; 0.0005). Serum sodium concentrations were not significantly different between dogs with hypoadrenocorticism and dogs with non-adrenal illness. Clinical Significance: These results suggest that urine sodium concentrations can be used to prioritize a differential diagnosis of hypoadrenocorticism in hyponatremic dogs. A urine sodium concentration &lt; 30 mmol/L in a hyponatremic dog makes classical hypoadrenocorticism an unlikely cause of the hyponatremia. Due to the small sample size in this study, results should be interpreted with caution. A larger follow-up study would be valuable.
DOI: 10.6084/m9.figshare.5576497.v1
title: Images for Sturgeon counting

description: These are the orignal images for training the counting software which was used for Sturgeon counting.
DOI: 10.6084/m9.figshare.5576443
title: Heat stress induced, ligand-independent MET and EGFR signalling in hepatocellular carcinoma

description: <b>Purpose:</b> The aims of the present study were 2-fold: first, to test the hypothesis that heat stress induces MET and EGFR signalling in hepatocellular carcinoma (HCC) cells and inhibition of this signalling decreases HCC clonogenic survival; and second, to identify signalling pathways associated with heat stress induced MET signalling. <b>Materials and Methods:</b> MET<sup>+</sup> and EGFR<sup>+</sup> HCC cells were pre-treated with inhibitors to MET, EGFR, PI3K/mTOR or vehicle and subjected to heat stress or control ± HGF or EGF growth factors and assessed by colony formation assay, Western blotting and/or quantitative mass spectrometry. IACUC approved partial laser thermal or sham ablation was performed on orthotopic N1S1 and AS30D HCC tumours and liver/tumour assessed for phospho-MET and phospho-EGFR immunostaining. <b>Results:</b> Heat-stress induced rapid MET and EGFR phosphorylation that is distinct from HGF or EGF in HCC cells and thermal ablation induced MET but not EGFR phosphorylation at the HCC tumour ablation margin. Inhibition of the MET and EGFR blocked both heat stress and growth factor induced MET and EGFR phosphorylation and inhibition of MET decreased HCC clonogenic survival following heat stress. Pathway analysis of quantitative phosphoproteomic data identified downstream pathways associated with heat stress induced MET signalling including AKT, ERK, Stat3 and JNK. However, inhibition of heat stress induced MET signalling did not block AKT signalling. <b>Conclusions:</b> Heat-stress induced MET and EGFR signalling is distinct from growth factor mediated signalling in HCC cells and MET inhibition enhances heat stress induced HCC cell killing via a PI3K/AKT/mTOR-independent mechanism.
DOI: 10.6084/m9.figshare.5576443.v1
title: Heat stress induced, ligand-independent MET and EGFR signalling in hepatocellular carcinoma

description: <b>Purpose:</b> The aims of the present study were 2-fold: first, to test the hypothesis that heat stress induces MET and EGFR signalling in hepatocellular carcinoma (HCC) cells and inhibition of this signalling decreases HCC clonogenic survival; and second, to identify signalling pathways associated with heat stress induced MET signalling. <b>Materials and Methods:</b> MET<sup>+</sup> and EGFR<sup>+</sup> HCC cells were pre-treated with inhibitors to MET, EGFR, PI3K/mTOR or vehicle and subjected to heat stress or control ± HGF or EGF growth factors and assessed by colony formation assay, Western blotting and/or quantitative mass spectrometry. IACUC approved partial laser thermal or sham ablation was performed on orthotopic N1S1 and AS30D HCC tumours and liver/tumour assessed for phospho-MET and phospho-EGFR immunostaining. <b>Results:</b> Heat-stress induced rapid MET and EGFR phosphorylation that is distinct from HGF or EGF in HCC cells and thermal ablation induced MET but not EGFR phosphorylation at the HCC tumour ablation margin. Inhibition of the MET and EGFR blocked both heat stress and growth factor induced MET and EGFR phosphorylation and inhibition of MET decreased HCC clonogenic survival following heat stress. Pathway analysis of quantitative phosphoproteomic data identified downstream pathways associated with heat stress induced MET signalling including AKT, ERK, Stat3 and JNK. However, inhibition of heat stress induced MET signalling did not block AKT signalling. <b>Conclusions:</b> Heat-stress induced MET and EGFR signalling is distinct from growth factor mediated signalling in HCC cells and MET inhibition enhances heat stress induced HCC cell killing via a PI3K/AKT/mTOR-independent mechanism.
DOI: 10.6084/m9.figshare.5576413
title: Spectra from Motion of glossy objects does not promote separation of lighting and surface colour

description: Illuminant spectral power distributions and diffuse spectral reflectances used in experiment stimuli
DOI: 10.6084/m9.figshare.5576416
title: Raw results from Motion of glossy objects does not promote separation of lighting and surface colour

description: Stimulus parameters and observer responses for all experimental trials
DOI: 10.6084/m9.figshare.5576407
title: The taxonomic position and breeding range of Golden Nightjar <i>Caprimulgus eximius</i> (Caprimulgidae)

description: Golden Nightjar <i>Caprimulgus eximius</i> is an apparently sedentary sub-Saharan species with a breeding range extending from Senegal and Mauritania to Sudan. Although genetic studies of nightjars and related Caprimulgiformes have been published previously, none has included Golden Nightjar. In this study, mitochondrial and nuclear DNA of a Golden Nightjar found dead in Western Sahara in April 2016 was sequenced and compared with other species in the genus <i>Caprimulgus</i>. It was concluded with strong support that Golden Nightjar is closely related to Egyptian Nightjar <i>C. aegyptius</i>. It is hypothesised that Golden and Egyptian Nightjars may have arisen by splitting of a single ancestral species into migratory and sedentary populations.
DOI: 10.6084/m9.figshare.5576416.v1
title: Raw results from Motion of glossy objects does not promote separation of lighting and surface colour

description: Stimulus parameters and observer responses for all experimental trials
DOI: 10.6084/m9.figshare.5576392
title: Image dataset (Paper: Paired mini-batch training)

description: This dataset was used in experiments of the paper, “Paired mini-batch training: A new deep network training for image forensics and steganalysis”.<br>All images were generated by Bossbase dataset, “Bas, P., Filler, T., Pevn`y, T., 2011. Break our steganographic system: The ins and outs of organizing boss, in: Information Hiding, Springer. pp. 59–70”.Image size – 256 x 256For forensic – 200,000 normal gray images and codes for generating manipulated images.Manipulation type – Additive white Gaussian noise deviation 1, Median filtering with a 3 x 3 kernel, Gaussian blurring with a 3 x 3 kernel and a standard deviation 0.4.For steganalysis – 160,000 normal gray images and stego images.Stego type – LSB, S-UNIWARD, WOW<br>
DOI: 10.6084/m9.figshare.5576368
title: Transcriptome analysis reveals novel genes involved in anthocyanin biosynthesis in the flesh of peach

description: Transcriptome analysis of the red flesh varieties ‘Tianjin Shui Mi’ and white flesh varieties ‘Hakuho’ during development period. Transcriptome analysis of fruit flesh in 30 varieties with different anthocyanin content.
DOI: 10.6084/m9.figshare.5576371
title: Effects of persistent wind speeds on turbulent fluxes in the water-atmosphere interface

description: This dataset is presented in the paper submitted to Journal of Geophysical Research-Atmospheres: Effects of persistent wind speeds on turbulent fluxes in the water-atmosphere interface. This dataset includes all the measured data used in the paper. For the detailed data description, please refer to the paper.<br>
DOI: 10.6084/m9.figshare.5576368.v1
title: Transcriptome analysis reveals novel genes involved in anthocyanin biosynthesis in the flesh of peach

description: Transcriptome analysis of the red flesh varieties ‘Tianjin Shui Mi’ and white flesh varieties ‘Hakuho’ during development period. Transcriptome analysis of fruit flesh in 30 varieties with different anthocyanin content.
DOI: 10.6084/m9.figshare.5576371.v2
title: Effects of persistent wind speeds on turbulent fluxes in the water-atmosphere interface

description: This dataset is presented in the paper submitted to Journal of Geophysical Research-Atmospheres: Effects of persistent wind speeds on turbulent fluxes in the water-atmosphere interface. This dataset includes all the measured data used in the paper. For the detailed data description, please refer to the paper.<br>
DOI: 10.6084/m9.figshare.5576371.v1
title: ec_ross_barnett.csv

description: The eddy covariance and meteorology data at the Ross Barnett Reservoir, Mississippi.
DOI: 10.6084/m9.figshare.5576392.v1
title: Image dataset (Paper: Paired mini-batch training)

description: This dataset was used in experiments of the paper, “Paired mini-batch training: A new deep network training for image forensics and steganalysis”.<br>All images were generated by Bossbase dataset, “Bas, P., Filler, T., Pevn`y, T., 2011. Break our steganographic system: The ins and outs of organizing boss, in: Information Hiding, Springer. pp. 59–70”.Image size – 256 x 256For forensic – 200,000 normal gray images and codes for generating manipulated images.Manipulation type – Additive white Gaussian noise deviation 1, Median filtering with a 3 x 3 kernel, Gaussian blurring with a 3 x 3 kernel and a standard deviation 0.4.For steganalysis – 160,000 normal gray images and stego images.Stego type – LSB, S-UNIWARD, WOW<br>
DOI: 10.6084/m9.figshare.5576347
title: second-act model fitting function

description: This function fits the input data with second-act model with initial parameters
DOI: 10.6084/m9.figshare.5576350
title: Complete list of compounds in CSD subset

description: Complete list of compounds used in this library, by CSD refcode. <br><br>The 'n' column indicates the number/identifier of the molecule<br>in the asymmetric unit.<br>
DOI: 10.6084/m9.figshare.5576347.v1
title: second-act model fitting function

description: This function fits the input data with second-act model with initial parameters
DOI: 10.6084/m9.figshare.5576332
title: Australias Ocean Microbiome Products

description: .fasta file containing Roche 454 Quality Controlled sequences generated from the Australias Ocean microbiome project. <br>.txt file containing sequence taxonomic assignments based on the SILVA reference database.<br><br>mapping file identifying sample origins and used for sourcetracking the impact of the East Australia Current on coastal marine microbial assemblages<br>Supplementary Table 1 from manuscript "Microbial tropicalisation driven by a strengthening western boundary current" - OTU table<br>Supplementary Table 4 from manuscript "Microbial tropicalisation driven by a strengthening western boundary current" - Functional gene abundances
DOI: 10.6084/m9.figshare.5576329
title: miRCancer.db.gz

description: The database file for the miRCancerdb application.
DOI: 10.6084/m9.figshare.5576323
title: miRCancerdb_helpers

description: A collection of helper files used in the miRCancerdb shiny app
DOI: 10.6084/m9.figshare.5576329.v1
title: miRCancer.db.gz

description: The database file for the miRCancerdb application.
DOI: 10.6084/m9.figshare.5576323.v1
title: miRCancerdb_helpers

description: A collection of helper files used in the miRCancerdb shiny app
DOI: 10.6084/m9.figshare.5576332.v1
title: Australias Ocean Microbiome Products

description: .fasta file containing Roche 454 Quality Controlled sequences generated from the Australias Ocean microbiome project. <br><br>.txt file containing sequence taxonomic assignments based on the SILVA reference database.<br>mapping file identifying sample origins and used for sourcetracking the impact of the East Australia Current on coastal marine microbial assemblages<br>
DOI: 10.6084/m9.figshare.5576305
title: LEGO Parts and Sets

description: The LEGO parts and sets list used in our study. Updated version.
DOI: 10.6084/m9.figshare.5576305.v2
title: LEGO Parts and Sets

description: The LEGO parts and sets list used in our study. Updated version.
DOI: 10.6084/m9.figshare.5576305.v1
title: LEGO Parts

description: The LEGO parts list used in our study. Updated version.