cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7577606
title: Supporting data for Absorbing stress via molecular crumple zones: Strain engineering flexibility into the rigid UiO-66 material

description: Supplementary data containing relevant structural information for the manuscript 'Absorbing stress via molecular crumple zones: Strain engineering flexibility into the rigid UiO-66 material'. Please also refer to https://github.com/SvenRogge/supporting-info for additional input scripts to reproduce these results and a detailed description of the different files.
description: Additional funding: Fund for Scientific Research Flanders (FWO, BE), grant no. 12T3522N Research Board of Ghent University (BOF, BE), grant no. GOA010-17 and iBOF-21-085
DOI: 10.35077/act-fly
title: Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 827573535

description: Mouse cortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of mouse cortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 827573535', GeneralModality:'cell morphology', Technique:'PATCH-Seq' SPECIMEN METADATA: LocalID:'827573535', Species:'mouse', NCBITaxonomy:'NCBI:txid10090', Genotype:'Ndnf-IRES2-dgCre/wt;Slc32a1-IRES2-FlpO/wt;Ai65(RCFL-tdT)/wt', SampleLocalID:'827573535', Locations:'VISp1' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.28'
DOI: 10.35077/act-fog
title: Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 828803869

description: Mouse cortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of mouse cortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 828803869', GeneralModality:'cell morphology', Technique:'PATCH-Seq' SPECIMEN METADATA: LocalID:'828803869', Species:'mouse', NCBITaxonomy:'NCBI:txid10090', Genotype:'Htr3a-Cre_NO152/wt;Ai14(RCL-tdT)/wt', SampleLocalID:'828803869', Locations:'VISp1' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.28'
DOI: 10.35077/act-foo
title: Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 842841654

description: Mouse cortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of mouse cortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 842841654', GeneralModality:'cell morphology', Technique:'PATCH-Seq' SPECIMEN METADATA: LocalID:'842841654', Species:'mouse', NCBITaxonomy:'NCBI:txid10090', Genotype:'Calb2-IRES-Cre/wt;Sst-IRES-FlpO/wt;Ai65(RCFL-tdT)/wt', SampleLocalID:'842841654', Locations:'VISp1' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.28'
DOI: 10.35077/act-fox
title: Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 843366621

description: Mouse cortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of mouse cortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 843366621', GeneralModality:'cell morphology', Technique:'PATCH-Seq' SPECIMEN METADATA: LocalID:'843366621', Species:'mouse', NCBITaxonomy:'NCBI:txid10090', Genotype:'Nos1-CreERT2/wt;Sst-IRES-FlpO/wt;Ai65(RCFL-tdT)/wt', SampleLocalID:'843366621', Locations:'VISp1' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.44'
DOI: 10.35077/act-fry
title: Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 855275163

description: Mouse cortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of mouse cortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 855275163', GeneralModality:'cell morphology', Technique:'PATCH-Seq' SPECIMEN METADATA: LocalID:'855275163', Species:'mouse', NCBITaxonomy:'NCBI:txid10090', Genotype:'Sncg-IRES2-FlpO-neo/wt;Ai65F/wt', SampleLocalID:'855275163', Locations:'VISl2/3' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.28'
DOI: 10.35077/act-fun
title: Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 855357345

description: Mouse cortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of mouse cortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 855357345', GeneralModality:'cell morphology', Technique:'PATCH-Seq' SPECIMEN METADATA: LocalID:'855357345', Species:'mouse', NCBITaxonomy:'NCBI:txid10090', Genotype:'Sncg-IRES2-FlpO-neo/wt;Ai65F/wt', SampleLocalID:'855357345', Locations:'VISp1' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.28'
DOI: 10.35077/act-gab
title: Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 855791035

description: Mouse cortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of mouse cortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 855791035', GeneralModality:'cell morphology', Technique:'PATCH-Seq' SPECIMEN METADATA: LocalID:'855791035', Species:'mouse', NCBITaxonomy:'NCBI:txid10090', Genotype:'Sncg-IRES2-FlpO-neo/wt;Ai65F/wt', SampleLocalID:'855791035', Locations:'VISp2/3' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.28'
DOI: 10.35077/act-gap
title: Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 866267921

description: Mouse cortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of mouse cortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 866267921', GeneralModality:'cell morphology', Technique:'PATCH-Seq' SPECIMEN METADATA: LocalID:'866267921', Species:'mouse', NCBITaxonomy:'NCBI:txid10090', Genotype:'Ndnf-IRES2-dgCre/wt;Slc32a1-IRES2-FlpO/wt;Ai65(RCFL-tdT)/wt', SampleLocalID:'866267921', Locations:'VISp2/3' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.28'
DOI: 10.35077/act-gas
title: Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 873854264

description: Mouse cortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of mouse cortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 873854264', GeneralModality:'cell morphology', Technique:'PATCH-Seq' SPECIMEN METADATA: LocalID:'873854264', Species:'mouse', NCBITaxonomy:'NCBI:txid10090', Genotype:'Nos1-CreERT2/wt;Sst-IRES-FlpO/wt;Ai65(RCFL-tdT)/wt', SampleLocalID:'873854264', Locations:'VISp1' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.44'
DOI: 10.35077/act-gel
title: Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 888108541

description: Mouse cortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of mouse cortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 888108541', GeneralModality:'cell morphology', Technique:'PATCH-Seq' SPECIMEN METADATA: LocalID:'888108541', Species:'mouse', NCBITaxonomy:'NCBI:txid10090', Genotype:'Ndnf-IRES2-dgCre/wt;Ai14(RCL-tdT)/wt', SampleLocalID:'888108541', Locations:'VISp2/3' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.28'
DOI: 10.35077/act-gem
title: Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 889183564

description: Mouse cortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of mouse cortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 889183564', GeneralModality:'cell morphology', Technique:'PATCH-Seq' SPECIMEN METADATA: LocalID:'889183564', Species:'mouse', NCBITaxonomy:'NCBI:txid10090', Genotype:'Ndnf-IRES2-dgCre/wt;Ai14(RCL-tdT)/wt', SampleLocalID:'889183564', Locations:'VISp1' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.28'
DOI: 10.35077/act-get
title: Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 889235347

description: Mouse cortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of mouse cortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 889235347', GeneralModality:'cell morphology', Technique:'PATCH-Seq' SPECIMEN METADATA: LocalID:'889235347', Species:'mouse', NCBITaxonomy:'NCBI:txid10090', Genotype:'Ndnf-IRES2-dgCre/wt;Ai14(RCL-tdT)/wt', SampleLocalID:'889235347', Locations:'VISp1' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.28'
DOI: 10.25416/ntr.21961127
title: Is curriculum leaders ability to act strategically subject specific? A study exploring the role of curriculum leaders in a primary school and the impact they have on children’s learning?

description: This poster represents findings from research conducted in partnership with Nottingham Trent University and a primary school in Nottinghamshire. <br> The project aims included: 1. To explore the way middle-leaders act strategically in order to implement their curriculum. [exploring power and agency - Tan, Ratnam-lim and Heng, 2016]. 2. To investigate whether subject specific curriculum leadership dictates their overall impact [Harris, Jones, Ismail and Nguyen, 2019]. 3. To investigate the impact of their role on children’s learning/attainment in their curriculum area. <br> This research poster was created in order to support dissemination to both staff and senior leaders. In addition to this a resource was created in order to provide additional materials for subjects leaders to draw up in relation to the projects findings: https://padlet.com/RebekahG3ar/b01h177i8o39vyw8 <br> *The school's name has been removed from the resource to protect anonymity*
DOI: 10.25416/ntr.21961127.v1
title: Is curriculum leaders ability to act strategically subject specific? A study exploring the role of curriculum leaders in a primary school and the impact they have on children’s learning?

description: This poster represents findings from research conducted in partnership with Nottingham Trent University and a primary school in Nottinghamshire. <br> The project aims included: 1. To explore the way middle-leaders act strategically in order to implement their curriculum. [exploring power and agency - Tan, Ratnam-lim and Heng, 2016]. 2. To investigate whether subject specific curriculum leadership dictates their overall impact [Harris, Jones, Ismail and Nguyen, 2019]. 3. To investigate the impact of their role on children’s learning/attainment in their curriculum area. <br> This research poster was created in order to support dissemination to both staff and senior leaders. In addition to this a resource was created in order to provide additional materials for subjects leaders to draw up in relation to the projects findings: https://padlet.com/RebekahG3ar/b01h177i8o39vyw8 <br> *The school's name has been removed from the resource to protect anonymity*
DOI: 10.6084/m9.figshare.21971018
title: Supplemental Tables

description: . Raw read count data of proximal and distal <em>Acomys </em>tail skin RNA-Seq samples mapped to the <em>Acomys </em>transcriptome
DOI: 10.6084/m9.figshare.21971042
title: Supplemental Tables

description: Significantly (pval &lt;=0.05) differentially expressed genes that exhibit a minimum of a log2 fold-change between distal and proximal skin samples.
DOI: 10.25926/aedk-vx89
title: Stepper Motor Dataset

description: Quality Control Report: All files are readable with the following software: file typ: csv –readable with Microsoft excel, version: 1908, 03.07.2020 file typ: pdf –readable with adobe acrobat reader, version: 2017.011.30166, 03.07.2020 file typ: xlsx -readable with Microsoft excel, version: 1908, 03.07.2020
description: This is the first publicly available dataset for mechanical stop detection of unipolar stepper motors. With the help of various current-, voltage-and vibration-signals, it is possible to gain information about the prevailing operating mode of the stepper motor and to detectwhen the stepper motor is operated outside its specified operating range. By detecting the mechanical stop, unnecessary wear and additional noise pollution can be avoided.
DOI: 10.5281/zenodo.7350485
title: Improving magnetic STEM-differential phase contrast imaging using precession

description: Scanning transmission electron microscopy datasets and processing files used in the journal publication "<strong>Improving Magnetic STEM-Differential Phase Contrast Imaging using Precession</strong>". DOI link to publication: https://doi.org/10.1093/micmic/ozad001 <strong>Prerequisites</strong> To run the scripts necessary to process the files, the open source packages JupyterLab, HyperSpy, pyXem, and fpd need to be installed. These notebooks were created with these package versions: hyperspy 1.6.4 pyxem 0.13.3 fpd 0.2.0 jupyterlab 3.2.0 <strong>Data files and processing scripts</strong> Data files are collected in .zip folders and have names that start with "d00..", while processing scripts are in the Jupyter Notebook .ipynb data format whose names start with "p00..". These files are divided into three main processing steps, outlined as follows: <strong>Processing of raw data</strong>: Raw data files can be found in the d001_scans.zip folder. These are processed with the p002_get_dpc_raw.ipynb script which uses either the center of mass or phase correlation methods. <strong>D-scan correction</strong>: The processed files from the previous step are saved in the d002_dpc_raw.zip folder. The p003_get_dpc_cor.ipynb script performs a d-scan correction on these files and saves the output in the d003_dpc_cor.zip folder. <strong>Virtual segmented detector algorithm</strong>: For comparison purposes to the other processing algorithms, a virtual segmented detector algorithm was developed and can be found in the p004_segmented_detector.ipynb script. This algorithm extracts a linear d-scan plane from already processed phase correlation files found in d002_dpc_raw.zip, subtracts it from the raw data files found in d001_scans.zip, and finally performs the processing algorithm. <strong>Plotting files</strong>:<strong> </strong>The p005_plot_dpc_images.ipynb script creates the figures as seen in the journal publication. The input files are those found in d003_dpc_cor.zip from the previous processing step.