cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34808/mn7v-6021
title: Endometrioid adenocarcinoma, NOS - Female, 60 - Tissue image [4100730020131931]

description: This is the histopathological image of CORPUS UTERI tissue sample obtained in University of Warmia and Mazury in Olsztyn and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 60Clinical description: Vaginal bleeding.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Endometrioid adenocarcinoma, NOSResult of the histopathological examination: Endometrioid adenocarcinoma G1.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: CORPUS UTERITissue: Body of uterusType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: University of Warmia and Mazury in Olsztyn
DOI: 10.34808/tq9k-hh27
title: Classical Hodgkin lymphoma, lymphocyte-rich - Male, 52 - Tissue image [3300730069453161]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 52Clinical description: 2 years history of enlarged inguinal lymph nodes. CT: enlarged inguinal, iliac and periaortic lymph nodes.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: CHOROBA HODGKINADiagnosis: Classical Hodgkin lymphoma, lymphocyte-richResult of the histopathological examination: Classical Hodgkin lymphoma, lymphocyte-rich. HRS cells: CD15+, CD30+, MUM1+, Pax 5 weak +, Ki-67 +, CD3-, EBVLMP1-, CD5-, Bcl2-, CD23-, Cyklin D1-.Sample:Material: FFPECollecting method: Excision of lesionsTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Lymph node, NOSType of staining: positive/IHCStaining: Not applicableAntibody: CD 30Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/opnt9j
title: Myodes glareolus - 72258, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-03-20, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/j26f-q318
title: Classical Hodgkin lymphoma, nodular sclerosis, NOS - Female, 17 - Tissue image [5070730026192021]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 17Clinical description: Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: CHOROBA HODGKINADiagnosis: Classical Hodgkin lymphoma, nodular sclerosis, NOSResult of the histopathological examination: Sample:Material: FFPECollecting method: Surgical specimenTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Supraclavicular lymph nodeType of staining: positive/IHCStaining: Not applicableAntibody: CD 21Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/y1et-5g59
title: Papillary hidradenoma - Female, 57 - Tissue image [11020630022697431]

description: This is the histopathological image of VULVA tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 57Clinical description: Tumor of labium minus.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: ADNEXAL AND SKIN APPENDAGE NEOPLASMSDiagnosis: Papillary hidradenomaResult of the histopathological examination: Papillary hidradenoma.Sample:Material: FFPECollecting method: Excision of lesionsTopography: FEMALE GENITAL ORGANSOrgan: VULVATissue: Labium minusType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/lcwnyn
title: Myodes glareolus - 164269, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1996-07-07, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/zpkr-1t53
title: Spindle cell sarcoma, undifferentiated - Unknown, 75 - Tissue image [3290730016648311]

description: This is the histopathological image of EYE AND ADNEXA tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 75Clinical description: Right orbital tumor biopsy. Fragmented material of total size 1x1x0.6 cm.Gender: UnknownDiagnosis:Classification: ICD-O_3.2Classification code: SOFT TISSUE TUMORS AND SARCOMAS, NOSDiagnosis: Spindle cell sarcoma, undifferentiatedResult of the histopathological examination: Spindle cell tumor with high-grade nuclear atypia and prominent mitotic activity (up to 6/10HPF). No foci of necrosis are found. Dense lymphocytic and plasma cell infiltrate is present at the periphery of the tumor. IHC: SMA(+) - focally, desmin(-), CD34(-), ALK1(-), S100(-), GFAP(-), B-catenin - weak membrane reaction, Ki67 40%.The morphological picture and IHC suggest a diagnosis of high-grade sarcoma, probably undifferentiated spindle cell sarcoma.Sample:Material: FFPECollecting method: Surgical biopsyTopography: EYE, BRAIN AND OTHER PARTS OF CENTRAL NERVOUS SYSTEMOrgan: EYE AND ADNEXATissue: Orbit, NOSType of staining: positive/IHCStaining: Not applicableAntibody: Beta-CateninTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/34mm-bx39
title: Carcinoma, NOS - Female, 51 - Tissue image [9030730013504411]

description: This is the histopathological image of THYROID GLAND tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 51Clinical description: Thyroidectomy. Papillary thyroid carcinoma diagnosed in fine needle aspiration (Bethesda VI). The histology represents one of the two lesions identified.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: EPITHELIAL NEOPLASMS, NOSDiagnosis: Carcinoma, NOSResult of the histopathological examination: Non-invasive follicular thyroid neoplasm with papillary-like nuclear features (NIFTP).Sample:Material: FFPECollecting method: Surgical specimenTopography: THYROID AND OTHER ENDOCRINE GLANDSOrgan: THYROID GLANDTissue: Thyroid glandType of staining: positive/HEStaining: Hematoxylin & eosinAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/myijag
title: Myodes glareolus - 117756, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1975-10-31, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/vg1m-r108
title: Mild cervical dysplasia - Female, 35 - Tissue image [4080730010659691]

description: This is the histopathological image of CERVIX UTERI tissue sample obtained in University of Warmia and Mazury in Olsztyn and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 35Clinical description: HSIL in the pap smear.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XIV - Diseases of the genitourinary systemDiagnosis: Mild cervical dysplasiaResult of the histopathological examination: LSIL (CIN1). Nabothian cysts.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: CERVIX UTERITissue: ExocervixType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: University of Warmia and Mazury in Olsztyn
DOI: 10.34808/pcby-x045
title: Duct adenocarcinoma, NOS - Female, 66 - Tissue image [12010630011279081]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 66Clinical description: Right breast carcinomaGender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: DUCTAL AND LOBULAR NEOPLASMSDiagnosis: Duct adenocarcinoma, NOSResult of the histopathological examination: The samples from the breast gland reveal  highly differentiated tubulo-lobular breast carcinoma (TLC, G1). Nottingham scale: 2 points - tubule formation, 1 point - nuclear pleomorphism, 1 point - mitotic activity.
All resection margins are tumor free. The narrowest margin 0.1 cm.Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Breast, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/jbmypq
title: Myodes glareolus - 46254, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1965-09-27, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/d3a5-hn97
title: CORPUS UTERI, Corpus uteri - Female, 33 - Tissue image [9160729581054031]

description: This is the histopathological image of CORPUS UTERI tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 33Clinical description: Histerectomy with bilateral fallopian tubes due to HSIL dysplasia confirmed by histopathological examination (colposcopy biopsy)Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: Endometrium without signs of pathological hyperplasia. Myometrium without focal lesions.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: CORPUS UTERITissue: Corpus uteriType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/p6y8-ay75
title: Paget disease, extramammary - Male, 64 - Tissue image [2270630026321391]

description: This is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 64Clinical description: Redness of skin of right groin (3,5 cm diameter). History of extramammary Paget disease of left groin.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: DUCTAL AND LOBULAR NEOPLASMSDiagnosis: Paget disease, extramammaryResult of the histopathological examination: Extramammary Paget disease of skin: CKAE1/AE3+, CK7+, HER2+, CK19+, CAM5.2+, CK20-, CDX2-, TTF1-, Napsin-, HMB45-.Sample:Material: FFPECollecting method: Excision of lesionsTopography: SKINOrgan: SKINTissue: Skin of groinType of staining: positive/IHCStaining: Not applicableAntibody: CK 7Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/6gwohm
title: Myodes glareolus - 166092, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1997-07-11, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/ex2h-a710
title: Malignant neoplasm of prostate - Male, 63 - Tissue image [330073006943571]

description: This is the histopathological image of PROSTATE GLAND tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 63Clinical description: An elevated level of PSA.Gender: MaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter II - NeoplasmsDiagnosis: Malignant neoplasm of prostateResult of the histopathological examination: Acinar adenocarcinoma of the prostate. Gleason score 3+4,  The radial margin is free of cancer.
Benign prostate hyperplasia and chronic prostatitis.Sample:Material: FFPECollecting method: Surgical specimenTopography: MALE GENITAL ORGANSOrgan: PROSTATE GLANDTissue: Prostate glandType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/yjb0-hj26
title: Neuroblastoma, NOS - Male, 5 - Tissue image [5070730026189381]

description: This is the histopathological image of RETROPERITONEUM AND PERITONEUM tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 5Clinical description: Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: NEUROEPITHELIOMATOUS NEOPLASMSDiagnosis: Neuroblastoma, NOSResult of the histopathological examination: Sample:Material: FFPECollecting method: Surgical biopsyTopography: RETROPERITONEUM AND PERITONEUMOrgan: RETROPERITONEUM AND PERITONEUMTissue: RetroperitoneumType of staining: positive/IHCStaining: Not applicableAntibody: s100Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/4rdm-c656
title: Tuberculosis of lung, confirmed histologically - Male, 36 - Tissue image [1060629594992081]

description: This is the histopathological image of BRAIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 36Clinical description: Autopsy.
Tuberculosis and emphysema of the lungs with lymphadenopathy. Pseudomembranous colitis. Shock. Cachexia.Gender: MaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter I - Certain infectious and parasitic diseasesDiagnosis: Tuberculosis of lung, confirmed histologicallyResult of the histopathological examination: Congestive edema and features of early autolysis in cerebral samples.Sample:Material: FFPECollecting method: Autopsy specimenTopography: EYE, BRAIN AND OTHER PARTS OF CENTRAL NERVOUS SYSTEMOrgan: BRAINTissue: Supratentorial brain, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/urbkjv
title: Myodes glareolus - 72194, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-03-19, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/7375-ge16
title: Infiltrating duct and lobular carcinoma - Female, 72 - Tissue image [7240729592873671]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 72Clinical description: Breast tumourGender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: DUCTAL AND LOBULAR NEOPLASMSDiagnosis: Infiltrating duct and lobular carcinomaResult of the histopathological examination: Lobular invasive breast carcinoma,  mucocellular.
Main component is LCIS, mucocellular. 
Areas of microinvasion are also present.Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Mammary glandType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.6084/m9.figshare.19840036
title: Karyotype of the blastocoel fluid derived by laser-assisted hatching demonstrates a low agreement with the trophectoderm

description: The aim of this study is to compare the amplification efficiency and the genomic profiles of blastocoel fluid (BF) derived by laser-assisted hatching and trophectoderm (TE) cells derived from the same blastocyst. Fifty-four fresh blastocysts underwent shrinkage by laser-assisted hatching, and each BF sample was collected individually. BF and TE cells were retrieved from each blastocyst for chromosome analysis through multiple annealing and looping-based amplification cycles (MALBAC) and next-generation sequencing (NGS). Fifty-four BF samples and 32 TE samples were retrieved for this study. Out of the 54 BF samples, only 35 provided reliable NGS data for comprehensive chromosome analysis (64.8%), while all 32 TE samples did (100%). Finally, there were 23 pairs of BF and TE samples from the same blastocyst. Only 17.4% of the BF-DNA karyotypes were completely agreeable with the TE samples (4/23). BF derived by laser-assisted hatching is easy to operate, and BF-DNA can be successfully amplified and subjected to NGS. Due to the low amplification efficiency and increased discordance with TE, BF does not adequately represent the status of the rest of the blastocyst. The use of BF as a single source of DNA for preimplantation genetic screening is not yet advised.
DOI: 10.34808/bp1g-zv90
title: Mantle cell lymphoma - Male, 93 - Tissue image [9140730014133891]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 93Clinical description: 4 cm mobile tumor of submandibular area. Flow cytometry:  B-cell lymphoma.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: MATURE B-CELL LYMPHOMASDiagnosis: Mantle cell lymphomaResult of the histopathological examination: Mantle cell lymphoma: CD20+, CyclinD1+, BCL2+, MUM1 focally +, CD3-, C10-, BCL6-, Ki-67 50%. Flow cytometry: CD23-, CD5-, kappa+, lambda-.Sample:Material: FFPECollecting method: Excision of lesionsTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Cervical lymph nodeType of staining: positive/IHCStaining: Not applicableAntibody: Cyclin D1Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/gwbdh8
title: Myodes glareolus - 104677, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1972-05-15, in: Białowieża National Park, Poland. Material type:
DOI: 10.6084/m9.figshare.19840036.v1
title: Karyotype of the blastocoel fluid derived by laser-assisted hatching demonstrates a low agreement with the trophectoderm

description: The aim of this study is to compare the amplification efficiency and the genomic profiles of blastocoel fluid (BF) derived by laser-assisted hatching and trophectoderm (TE) cells derived from the same blastocyst. Fifty-four fresh blastocysts underwent shrinkage by laser-assisted hatching, and each BF sample was collected individually. BF and TE cells were retrieved from each blastocyst for chromosome analysis through multiple annealing and looping-based amplification cycles (MALBAC) and next-generation sequencing (NGS). Fifty-four BF samples and 32 TE samples were retrieved for this study. Out of the 54 BF samples, only 35 provided reliable NGS data for comprehensive chromosome analysis (64.8%), while all 32 TE samples did (100%). Finally, there were 23 pairs of BF and TE samples from the same blastocyst. Only 17.4% of the BF-DNA karyotypes were completely agreeable with the TE samples (4/23). BF derived by laser-assisted hatching is easy to operate, and BF-DNA can be successfully amplified and subjected to NGS. Due to the low amplification efficiency and increased discordance with TE, BF does not adequately represent the status of the rest of the blastocyst. The use of BF as a single source of DNA for preimplantation genetic screening is not yet advised.
DOI: 10.34808/ch6v-jx13
title: Pheochromocytoma, NOS - Male, 43 - Tissue image [3300730069436571]

description: This is the histopathological image of ADRENAL GLAND tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 43Clinical description: A tumor of left adrenal gland, 4 cm in diameter.
Level of normetanephrin in 24-hour urine collection >2766 ug/24 hours (norm: 105-354 ug/24 hours)Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: PARAGANGLIOMAS AND GLOMUS TUMORSDiagnosis: Pheochromocytoma, NOSResult of the histopathological examination: Pheochromocytoma of adrenal gland
S100 - positive staining in sustentacular cellsSample:Material: FFPECollecting method: Surgical specimenTopography: THYROID AND OTHER ENDOCRINE GLANDSOrgan: ADRENAL GLANDTissue: Adrenal gland, NOSType of staining: positive/IHCStaining: Not applicableAntibody: s100Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk