cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9ikk9l
title: Occurrence Download

description: A dataset containing 898 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tejidos de la desembocadura del caño Teracay en el río Tomo, Puerto Carreño, Vichada - Proyecto Colombia Bio"
 ]
}

 The dataset includes 898 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002402-190307172214381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.egymuv
title: Occurrence Download

description: A dataset containing 28299 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bombus pensylvanicus (De Geer, 1773)"
 ]
}

 The dataset includes 28299 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044925-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dmrbnq
title: Occurrence Download

description: A dataset containing 795 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Plebejus argus (Linnaeus, 1758)",
 "Year 1970-2000"
 ]
}

 The dataset includes 795 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046617-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wvdrrp
title: Occurrence Download

description: A dataset containing 102161 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 {
 "or" : [
 "Issue is Coordinate rounded",
 "Issue is Geodetic datum assumed WGS84"
 ]
 },
 {
 "or" : [
 "Month is March",
 "Month is April",
 "Month is May",
 "Month is June"
 ]
 },
 "Year 1995-2019",
 "TaxonKey is Corvus frugilegus Linnaeus, 1758"
 ]
}

 The dataset includes 102161 records from 181 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002402-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.myu33z
title: Occurrence Download

description: A dataset containing 141771 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phaseolus L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 141771 records from 610 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002087-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14722542
title: Role of Oral Dysbiosis in the Pathogenesis of Idiopathic Interstitial Lung Diseases
title: Papel da disbiose oral na patogênese de doenças pulmonares intersticiais idiopáticas
title: Papel de la disbiosis oral en la patogénesis de las enfermedades pulmonares intersticiales idiopáticas
DOI: 10.5281/zenodo.14722543
title: Role of Oral Dysbiosis in the Pathogenesis of Idiopathic Interstitial Lung Diseases
title: Papel da disbiose oral na patogênese de doenças pulmonares intersticiais idiopáticas
title: Papel de la disbiosis oral en la patogénesis de las enfermedades pulmonares intersticiales idiopáticas
DOI: 10.5281/zenodo.10730413
title: High-resolution images from a low-cost imaging device for hyphae in soil

description: This dataset contains high-resolution images produced by a low-cost imaging device for hyphae in soil called Hyphascope. Using a digital microscope camera (DMC; 600× magnification), the device takes detailed images (0.83 × 0.62 mm imaged area) of a soil profile from evenly spaced camera positions within a user-defined volume. Repeated imaging of a soil profile with Hyphascope enables researchers to observe and quantify changes in the amount, distribution, and morphology of hyphae.

Individual images were combined using the Grid/Collection stitching plugin of the Fiji distribution of imageJ (Preibisch et al. 2009). All images are supplied in the JPG format to limit their file size. For more details on the assembly and application of Hyphascope, see this protocol on protocols.io. For information on the development, limitations, and expected outcomes of the protocol, see this article published in PLOS ONE.  

 



Image set 1: 10 × 10 mm soil profile area at 20 - 30 mm soil depth

Imaged at 0.65 μm px-1 (39200 dpi)* in a Quercus serrata grove on 2023/05/25 during a period of high hyphal density in the soil.

Individual images (18 rows × 14 images each)





set1_foc00000.zip (focus depth 0 mm)



Combined images





set1_foc00000_combined.jpg (focus depth 0 mm)



Image set 2: 5 × 5 mm soil profile area at 100 - 105 mm soil depth

Imaged at 0.52 μm px-1 (49000 dpi) in a Quercus serrata grove on 2023/09/25.

Individual images (9 rows × 7 images each)





set1_foc00000.zip (focus depth 0 mm)




set1_foc00025zip (focus depth 0.025 mm)


set1_foc00050.zip (focus depth 0.05 mm)


Combined images





set1_foc00000_combined.jpg (focus depth 0 mm)




set1_foc00025_combined.jpg (focus depth 0.025 mm)


set1_foc00050_combined.jpg (focus depth 0.05 mm)


Image set 3: 5 × 5 mm soil profile area at soil surface level

Imaged at 0.52 μm px-1 (49000 dpi) in a Quercus serrata grove on 2023/10/14 during a rain event.

Individual images (9 rows × 7 images each)





set2_foc00000.zip (focus depth 0 mm)




set2_foc00025zip (focus depth 0.025 mm)


set2_foc00050.zip (focus depth 0.05 mm)


Combined images





set2_foc00000_combined.jpg (focus depth 0 mm)




set2_foc00025_combined.jpg (focus depth 0.025 mm)


set2_foc00050_combined.jpg (focus depth 0.05 mm)


 

 

*Units of imaging resolution: 



pixel width (μm px-1), i.e. the horizontal or vertical distance on the imaged surface covered by a single pixel; 

dots per inch (dpi), i.e. the number of pixels along a horizontal or vertical distance of 25.4 mm on the imaged surface.
DOI: 10.5281/zenodo.10730414
title: High-resolution images from a low-cost imaging device for hyphae in soil

description: This dataset contains high-resolution images produced by a low-cost imaging device for hyphae in soil called Hyphascope. Using a digital microscope camera (DMC; 600× magnification), the device takes detailed images (0.83 × 0.62 mm imaged area) of a soil profile from evenly spaced camera positions within a user-defined volume. Repeated imaging of a soil profile with Hyphascope enables researchers to observe and quantify changes in the amount, distribution, and morphology of hyphae.

Individual images were combined using the Grid/Collection stitching plugin of the Fiji distribution of imageJ (Preibisch et al. 2009). All images are supplied in the JPG format to limit their file size. For more details on the assembly and application of Hyphascope, see this protocol on protocols.io. For information on the development, limitations, and expected outcomes of the protocol, see this article published in PLOS ONE.  

 



Image set 1: 10 × 10 mm soil profile area at 20 - 30 mm soil depth

Imaged at 0.65 μm px-1 (39200 dpi)* in a Quercus serrata grove on 2023/05/25 during a period of high hyphal density in the soil.

Individual images (18 rows × 14 images each)





set1_foc00000.zip (focus depth 0 mm)



Combined images





set1_foc00000_combined.jpg (focus depth 0 mm)



Image set 2: 5 × 5 mm soil profile area at 100 - 105 mm soil depth

Imaged at 0.52 μm px-1 (49000 dpi) in a Quercus serrata grove on 2023/09/25.

Individual images (9 rows × 7 images each)





set1_foc00000.zip (focus depth 0 mm)




set1_foc00025zip (focus depth 0.025 mm)


set1_foc00050.zip (focus depth 0.05 mm)


Combined images





set1_foc00000_combined.jpg (focus depth 0 mm)




set1_foc00025_combined.jpg (focus depth 0.025 mm)


set1_foc00050_combined.jpg (focus depth 0.05 mm)


Image set 3: 5 × 5 mm soil profile area at soil surface level

Imaged at 0.52 μm px-1 (49000 dpi) in a Quercus serrata grove on 2023/10/14 during a rain event.

Individual images (9 rows × 7 images each)





set2_foc00000.zip (focus depth 0 mm)




set2_foc00025zip (focus depth 0.025 mm)


set2_foc00050.zip (focus depth 0.05 mm)


Combined images





set2_foc00000_combined.jpg (focus depth 0 mm)




set2_foc00025_combined.jpg (focus depth 0.025 mm)


set2_foc00050_combined.jpg (focus depth 0.05 mm)


 

 

*Units of imaging resolution: 



pixel width (μm px-1), i.e. the horizontal or vertical distance on the imaged surface covered by a single pixel; 

dots per inch (dpi), i.e. the number of pixels along a horizontal or vertical distance of 25.4 mm on the imaged surface.
DOI: 10.15468/dl.46hh2s
title: Occurrence Download

description: A dataset containing 66441 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Philadelphus L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 66441 records from 710 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002096-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10689904
title: Design files for a low-cost high-resolution imaging device for hyphae in soil

description: This dataset contains the stereolithography (STL) files for the 3D-printed and cut parts of a low-cost high-resolution imaging device for hyphae in soil called Hyphascope. The design of Hyphascope was adopted from the 3D printer i3 MK3S+ by Prusa Research, with a digital microscope camera (DMC; 600× magnification) replacing the filament extruder. Repeated imaging of a soil profile with the imaging device enables researchers to observe and quantify changes in the amount, distribution, and morphology of hyphae.

The parts were created and modified using FreeCAD (version 0.20). STL files for the original parts are distributed under the Creative Commons Attribution 4.0 International License, STL files for the remixed parts under the GNU General Public License v2.0. For a detailed description on how to prepare and assemble the parts see this protocol on protocols.io. For information on the development, limitations, and expected outcomes of the protocol, see this article published in PLOS ONE.

 



STL files of 3D-printed parts

Original parts








dmc-attachment.stl



dmc-attachment-gear.stl


dmc-attachment-gear-wider.stl (optional part)

dmc-holder-back.stl

dmc-holder-front.stl

f-axis-motor-gear.stl

f-axis-spring-end.stl

f-axis-tighteners.stl

frame-foot-inserts.stl



frame-foot-left.stl




frame-foot-right.stl




frame-hat.stl




frame-hat-insert.stl




Remixed parts originally designed by Prusa Research

The five parts below are remixed from i3 MK3S+ printable parts and re-distributed under the GNU General Public License v2.0.






dmc-carriage-back.stl (Remix of x-carriage-back.stl; the design was largely modified to fit the DMC including changes to the shape and screw hole placement; the inserts for the linear bearings have the most resemblence to the original part.)


dmc-carriage-front.stl (Remix of x-carriage.stl; the design was largely modified to fit the DMC including changes to the shape and screw hole placement; the inserts for the linear bearings have the most resemblence to the original part.)

x-end-idler-mod.stl (Remix of x-end-idler.stl; the height was increased by 20 mm.)

x-end-motor-mod.stl (Remix of x-end-motor.stl; the height was increased by 20 mm and the counterbores of the three motor screws were moved to the opposite side.)

z-axis-top-mod.stl (Remix of z-axis-top.stl; 14.8 mm-long spacers were added.)


Parts designed by Prusa Research





z-axis-bottom.stl (available from Printables)




z-screw-cover.stl (available from Printables)



 



STL files of cut parts

Original parts




box-bottom.stl

box-hook.stl



box-lid.stl




box-lid-frame.stl


box-lid-valve-base.stl

box-wall.stl

box-wall-cables.stl



frame.stl
DOI: 10.5281/zenodo.10689905
title: Design files for a low-cost high-resolution imaging device for hyphae in soil

description: This dataset contains the stereolithography (STL) files for the 3D-printed and cut parts of a low-cost high-resolution imaging device for hyphae in soil called Hyphascope. The design of Hyphascope was adopted from the 3D printer i3 MK3S+ by Prusa Research, with a digital microscope camera (DMC; 600× magnification) replacing the filament extruder. Repeated imaging of a soil profile with the imaging device enables researchers to observe and quantify changes in the amount, distribution, and morphology of hyphae.

The parts were created and modified using FreeCAD (version 0.20). STL files for the original parts are distributed under the Creative Commons Attribution 4.0 International License, STL files for the remixed parts under the GNU General Public License v2.0. For a detailed description on how to prepare and assemble the parts see this protocol on protocols.io. For information on the development, limitations, and expected outcomes of the protocol, see this article published in PLOS ONE.

 



STL files of 3D-printed parts

Original parts








dmc-attachment.stl



dmc-attachment-gear.stl


dmc-attachment-gear-wider.stl (optional part)

dmc-holder-back.stl

dmc-holder-front.stl

f-axis-motor-gear.stl

f-axis-spring-end.stl

f-axis-tighteners.stl

frame-foot-inserts.stl



frame-foot-left.stl




frame-foot-right.stl




frame-hat.stl




frame-hat-insert.stl




Remixed parts originally designed by Prusa Research

The five parts below are remixed from i3 MK3S+ printable parts and re-distributed under the GNU General Public License v2.0.






dmc-carriage-back.stl (Remix of x-carriage-back.stl; the design was largely modified to fit the DMC including changes to the shape and screw hole placement; the inserts for the linear bearings have the most resemblence to the original part.)


dmc-carriage-front.stl (Remix of x-carriage.stl; the design was largely modified to fit the DMC including changes to the shape and screw hole placement; the inserts for the linear bearings have the most resemblence to the original part.)

x-end-idler-mod.stl (Remix of x-end-idler.stl; the height was increased by 20 mm.)

x-end-motor-mod.stl (Remix of x-end-motor.stl; the height was increased by 20 mm and the counterbores of the three motor screws were moved to the opposite side.)

z-axis-top-mod.stl (Remix of z-axis-top.stl; 14.8 mm-long spacers were added.)


Parts designed by Prusa Research





z-axis-bottom.stl (available from Printables)




z-screw-cover.stl (available from Printables)



 



STL files of cut parts

Original parts




box-bottom.stl

box-hook.stl



box-lid.stl




box-lid-frame.stl


box-lid-valve-base.stl

box-wall.stl

box-wall-cables.stl



frame.stl
DOI: 10.15468/dl.wzw4uz
title: Occurrence Download

description: A dataset containing 3883 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acanthurus achilles Shaw, 1803"
 ]
}

 The dataset includes 3883 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002099-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g9des2
title: Occurrence Download

description: A dataset containing 240 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acanthurus nigros Günther, 1861"
 ]
}

 The dataset includes 240 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002100-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8qqca5
title: Occurrence Download

description: A dataset containing 10722 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acanthurus nigroris Valenciennes, 1835"
 ]
}

 The dataset includes 10722 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002102-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25984/2433862
title: 2022 Annual Technology Baseline (ATB) Cost and Performance Data for Transportation Technologies

description: The 2022 Transportation Annual Technology Baseline (ATB) provides detailed cost and performance data, estimates, and assumptions for vehicle and fuel technologies in the United States. It includes current and projected estimates: time-series through 2050 for light, medium, and heavy-duty vehicle technologies; scenarios for conventional and alternative fuels. It details the assumptions used to calculate those costs, such as natural gas and electricity prices, discount rates, and vehicle miles traveled. The 2022 Transportation ATB vehicle data are specifically for cars powered by gasoline, diesel, natural gas, gasoline hybrid, plug-in hybrid, battery electric, and fuel-cell powertrains and for trucks powered by diesel, diesel hybrid, plug-in hybrid, battery electric, and fuel cell powertrains. Fuels and blendstocks include gasoline, ethanol, blendstock for oxygenate blending, diesel, diesel from biomass, natural gas, electricity, hydrogen, aviation fuel, and marine fuel. At this time, the ATB does not include other vehicles such as buses, 2- and 3-wheeled motorized vehicles, or non-road vehicles such as aircraft, vessels, locomotives, and those for industry and agriculture. See "ATB Transportation Website" resource below for more project information.
DOI: 10.15468/dl.94bnr9
title: Occurrence Download

description: A dataset containing 341441 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phyteuma L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 341441 records from 1039 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002098-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/2kr-w8t-370
title: Elymus reflexiaristatus (Nevski) Melderis

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/78r-wg5-hfa
title: Viscum album L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/zh5-641-85c
title: Polygala alpina (Poir. ex DC.) Steud.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/dlj-a3q-6yn
title: Lippia hieraciifolia Cham.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/lyr-mgm-xj8
title: Draba fladnizensis Wulfen

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/mhs-w51-ak4
title: Tofieldia calyculata (L.) Wahlenb.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/46k-5vz-5tr
title: Acacia adenophora Spreng.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/jvb-lnp-b5h
title: Primula hirsuta All.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/wns-233-bdz
title: Elymus longiaristatus (Boiss.) Tzvelev

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/3lb-dvm-9gl
title: Saxifraga aizoides L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/n47-2k0-05g
title: Festuca circummediterranea Patzke

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/rfj-5ym-4pq
title: Luzula alpinopilosa subsp. alpinopilosa (Chaix) Breistr.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/gtd-bkx-0kj
title: Elymus longiaristatus (Boiss.) Tzvelev

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/l9a-s47-pvs
title: Euphrasia minima Jacq. ex DC.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/wfa-62b-sc9
title: Gentiana kochiana E. P. Perrier & Songeon

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/1yx-9hk-kk2
title: Andromeda cubensis Griseb.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/9m2-rjb-1y2
title: Arctostaphylos alpinus (L.) Spreng.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/dm5-92y-8t1
title: Linaria triphylla (L.) Mill.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/s6k-fdl-gjl
title: Arctostaphylos uva-ursi (L.) Spreng.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/2tw-t6e-74n
title: Gentiana verna L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/afc-gsz-xq5
title: Oxytropis triflora Hoppe

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/z40-j52-0bz
title: Festuca circummediterranea Patzke

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/hj7-hsf-7x6
title: Meliosma Blume

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/qch-d2n-pn3
title: Laserpitium latifolium L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/yp9-nm9-wf9
title: Prenanthes purpurea L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/b3j-319-kkz
title: Ranunculus montanus Willd.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/l7z-3b3-by3
title: Valerianella eriocarpa Desv.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/yyk-5fe-j13
title: Allium lusitanicum Lam.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/37j-t69-e3r
title: Agropyron Gaertn.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/5pt-asb-l91
title: Eryngium rostratum Cav.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/z3w-6e6-r59
title: Tovomita secunda Poepp. ex Planch. & Triana

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/e6z-lxt-85b
title: Centaurea pseudophrygia C. A. Mey.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/gx1-tym-671
title: Carduus personata (L.) Jacq.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/wqx-0wt-pqx
title: Tragia volubilis var. lanceolata Müll. Arg.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/gm1-1rk-8ae
title: Dianthus sylvestris Wulfen

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/l7r-s7e-2xq
title: Festuca circummediterranea Patzke

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.