cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.q83bk3jkk
title: Phylogenomic resolution of the root of Panpulmonata, a hyperdiverse radiation of gastropods: new insight into the evolution of air breathing

description: Transitions to terrestriality have been associated with major animal
 radiations including land snails and slugs in Stylommatophora
 (&gt;20,000 described species), the most successful lineage of
 ‘pulmonates’ (a non-monophyletic assemblage of air-breathing gastropods).
 However, phylogenomic studies have failed to robustly resolve
 relationships among traditional pulmonates and affiliated marine lineages
 that comprise clade Panpulmonata (Mollusca, Gastropoda), especially two
 key taxa: Sacoglossa, a group including photosynthetic sea slugs; and
 Siphonarioidea, intertidal limpet-like snails with a non-contractile
 pneumostome (narrow opening to a vascularized pallial cavity). To clarify
 the evolutionary history of the panpulmonate radiation, we performed
 phylogenomic analyses on datasets of up to 1,160 nuclear protein-coding
 genes for 110 gastropods, including 40 new transcriptomes for Sacoglossa
 and Siphonarioidea. All 18 analyses recovered Sacoglossa as the sister
 group to a clade we named Pneumopulmonata, within which Siphonarioidea was
 sister to the remaining lineages in most analyses. Comparative modeling
 indicated shifts to marginal habitat (estuarine, mangrove and intertidal
 zones) preceded and accelerated the evolution of a pneumostome, present in
 the pneumopulmonate ancestor along with a one-sided plicate gill. These
 findings highlight key intermediate stages in the evolution of
 air-breathing snails, supporting the hypothesis that adaptation to
 marginal zones played an important role in major sea-to-land transitions.
DOI: 10.57903/uj/l4amy1
title: Anchoring groups for ordered and highly stable monomolecular films on naturally oxidized aluminum – phosphonate versus carboxylate - replication data

description: Replication data for publication "Anchoring groups for ordered and highly stable monomolecular films on naturally oxidized aluminum – phosphonate versus carboxylate"
DOI: 10.5061/dryad.kwh70rz5q
title: Low toxicity crop fungicide (Fenbuconazole) impacts reproductive male quality signals leading to a reduction of mating success in a wild solitary bee

description: Recent reports on bee health suggest that sub-lethal doses of pesticides
 have negative effects on wild bee reproduction and ultimately on their
 population growth. Females of the solitary horned mason bee, Osmia
 cornuta, evaluate thoracic vibrations and odours of males to assess male
 quality. When certain criteria are met, the female accepts the male and
 copulates. However, these signals were found to be modified by sub-lethal
 doses of pesticides in other hymenopterans. Here, we tested whether
 sub-lethal doses of a commonly used fungicide (Fenbuconazole) impact male
 quality signals and mating success in O. cornuta. Males exposed to
 Fenbuconazole exhibited reduced thoracic vibrations and an altered
 cuticular hydrocarbon profile compared to the control bees. Moreover,
 males exposed to the fungicide were less successful in mating than control
 males. Synthesis and applications: Our results indicate that a low
 toxicity fungicide can negatively affect male reproductive success by
 altering behavioural and chemical cues. This could explain the decreasing
 pollinator populations in a pesticide-polluted environment. This study
 highlights the need for a more comprehensive approach, including behaviour
 and chemical cues, when testing new pesticides and a more cautionary
 approach to the pesticides already used on crops.
DOI: 10.5061/dryad.pk0p2ngqg
title: Namib Desert gravel plains nematodes

description: Soil nematodes are fundamentally aquatic animals, requiring water to move,
 feed, and reproduce. Nonetheless, they are ubiquitous in desert soils
 because they can enter an anhydrobiotic state that allows them to persist
 when water is biologically unavailable. In the hyper-arid Namib Desert of
 Namibia, rain is rare, but fog routinely moves inland from the coast and
 supports plant and animal life. Very little is understood about how this
 fog may affect soil organisms. We investigated the role of fog moisture in
 the ecology of free-living, soil nematodes across an 87-km fog gradient in
 the gravel plains of the Namib Desert. We found that nematodes emerged
 from anhydrobiosis and became active during a fog event, suggesting that
 they can utilize fog moisture to survive. There was no difference in soil
 nematode abundance across the fog gradient. Nematode abundance was similar
 under shrubs and in interplant spaces. Interplant soils harbor biological
 soil crusts that may sustain nematode communities. As fog declined along
 the gradient, nematode diversity increased in interplant soils. In areas
 where fog is rare, sporadic rainfall events can stimulate the germination
 and growth of desert ephemerals that may have a lasting effect on nematode
 diversity. In a 30-day incubation experiment, nematodes increased in
 abundance when soils were amended with water and organic matter. However,
 these responses were not evident in field samples, which show no
 correlations among nematode abundance, location in the fog gradient, and
 soil organic matter content. Soil nematodes are found throughout the Namib
 Desert gravel plains under a variety of conditions. Although shown to be
 moisture- and organic matter-limited and able to use moisture from fog for
 activity, variation in fog frequency and soil organic matter across this
 unique ecosystem may be biologically irrelevant to soil nematodes in situ.
description: This dataset contains information from several field and
 laboratory experiments. See publication for details.  
description: Variables in spreadsheet were not measured for every sample, but
 this is indicated on the spreadsheet.
DOI: 10.5061/dryad.98sf7m0kz
title: Experimental habitat fragmentation disrupts host-parasite interaction over decades via life-cycle bottlenecks

description: Habitat loss and fragmentation are likely to seriously impact parasites, a
 less studied but critical component of ecosystems, yet we lack long-term
 experimental evidence. Parasites structure communities, increase
 connectivity in food webs, and account for a large proportion of an
 ecosystem’s total biomass. Food web models predict that parasites with
 multiple obligate hosts are at greater risk of extinction because the
 local extinction, or reduction in abundance, of any host will result in a
 life-cycle bottleneck for the parasite. We examine the response of a
 parasite and its multiple hosts to forest fragmentation over 26 years in
 the Wog Wog Habitat Fragmentation Experiment in southeastern Australia.
 The parasite is the nematode Hedruris wogwogensis, its intermediate host
 is the amphipod, Arcitalitrus sylvaticus, and its definitive host is the
 skink, Lampropholis guichenoti. In the first decade after fragmentation,
 nematodes completely disappeared from the matrix (plantation forestry) and
 all but disappeared from their definitive host (skinks) in fragments, and
 by the third decade after fragmentation had not appreciably recovered
 anywhere in the fragmented landscape compared to continuous forest. The
 low prevalence of the nematode in the fragmented landscape was associated
 with the low abundance of one or the other host in different decades: low
 abundance of the intermediate host (amphipod) in the first decade and low
 abundance of the definitive host (skink) in the third decade. In turn, the
 low abundance of each host was associated with changes to the abiotic
 environment over time due largely to the dynamically changing matrix as
 the plantation trees grew. Our study provides rare long-term experimental
 evidence of how disturbance can cause local extinction in parasites with
 life cycles dependent on more than one host species through population
 bottlenecks at any life stage. Mismatches in the abundance of multiple
 hosts over time are likely to be common following disturbance, thus
 causing parasites with complex life cycles to be particularly susceptible
 to habitat fragmentation and other disturbances. The integrity of food
 webs, communities, and ecosystems in fragmented landscapes may be more
 compromised than presently appreciated due to the sensitivity of parasites
 to habitat fragmentation.
DOI: 10.5061/dryad.g1jwstqsx
title: High dimensionality of stoichiometric niches in soil fauna

description: The ecological niche is a fundamental concept to understand species
 coexistence in natural communities. The recently developed framework of
 the multidimensional stoichiometric niche (MSN) characterizes species
 niches using chemical elements in living organisms. Despite the fact that
 living organisms are composed by multiple elements, stoichiometric studies
 have so far mostly focused on carbon (C), nitrogen (N), and phosphorus
 (P), and therefore a quantitative analysis of the dimensionality of the
 MSN in living organisms is still lacking, particularly for animals. Here
 we quantified ten elements composing the biomass of nine soil animal taxa
 (958 individuals) from three trophic groups. We found that all ten
 elements exhibited large variation among taxa, which was partially
 explained by their phylogeny. Overlaps of MSNs among the nine soil animal
 taxa were relatively smaller based on ten elements, compared with those
 based on only C, N, and P. Discriminant analysis using all ten elements
 successfully differentiated among the nine taxa (accuracy: 90%), whereas
 that using only C, N, and P resulted in a lower accuracy (60%). Our
 findings provide new evidence for MSN differentiation in soil fauna and
 demonstrate the high dimensionality of organismal stoichiometric niches
 beyond C, N, and P.
description: Before elemental analyses,
 each individual animal was freeze-dried for 72 h. Specimens larger than 20
 mg were grounded individually into a homogenous powder using a bead mill
 homogenizer (Bead Ruptor 12, Omni International, USA). Approximately 2 mg
 of powder was used to quantify C and N contents (percentage of dry mass)
 using a vario EL cube CHNOS Elemental Analyzer (Elementar Analysensysteme
 GmbH, Germany). Another ~2 mg of powder was digested with nitric acid (2
 ml and 70% by weight) and used to quantify the contents of Ca, Cu, K, Mg,
 Mn, Na, P, and Zn using an iCAP 6301 ICP-OES Spectrometer (Thermo Fisher,
 USA). During the grinding process, a fraction of powder cannot be
 retrieved and thus lost, making it difficult to quantify all elements for
 small
 individuals. Thus, for individuals smaller than
 20 mg, we used the whole body or pooled a number of individuals from the
 same sampling plot
 (thus forming an
 “aggregated individual”) to measure either the C and N contents or
 contents of other eight elements.
DOI: 10.5061/dryad.wwpzgmsmk
title: Data from: Competitive consequences determined by phenotypic but not genetic distance: a study with asexual Daphnia genotypes

description: 1. How evolutionary relatedness influences the strength of
 competitive interactions among genetically isolated populations
 has been a long-standing interest in ecology.
 Darwin's “Competition Relatedness Hypothesis (CRH)”
 states that, since closely related species should compete more strongly,
 they are less likely to coexist,
 while Herbert’s “Bimodal Competition Hypothesis
 (BCH)” predicts that competitive exclusion is less likely to occur when
 the competing species are genetically close or distant. 2. To test these
 hypotheses, we experimentally examined the difference in
 the competitive ability and life tables of fecundity and
 survivorship among four different genotypes
 of asexual Daphnia cf. pulex that diverged from a single ancestral genotype. 3. The experiments showed that the competitive consequences differed depending on the pairing of the competing genotypes, and that the degree of the competitive exclusion was lower when the competing genotypes were genetically closer to each other. These results partially supported the BCH but not the CRH at all. More importantly, the degree of competitive exclusion was better predicted by the phenotypic rather than genetic distances between the competing genotypes. 4. The life table experiments revealed that competitively inferior genotypes had higher early reproduction rates, but survival rates decreased with age and thus body size, probably a result of selection by predation pressures found in nature. 5. These results indicate that competitive superiority is highly dependent on selection pressures that given organisms have been evolutionally subjected to, and, that genetic similarity is not necessarily an appropriate measure for predicting the completive exclusion on an ecological time scale. To predict competitive relationships among the organisms, it is essential to comprehend their phenotypic differences rather than simply knowing their genetic or phylogenetic relationships.
DOI: 10.5061/dryad.931zcrjn5
title: Delayed early life effects in the threespine stickleback

description: Early life conditions can have a decisive influence on viability later in
 life. Yet, the influence of embryo density within a nest or body cavity on
 subsequent viability has received little attention within an ecological
 setting. This is surprising given that embryos often compete for limited
 resources, such as nutrients and oxygen, and this could influence their
 viability later in life through carry-over and compensatory effects. We
 show that the density of fertilised eggs within the nests of threespine
 stickleback males (Gasterosteus aculeatus) influences their viability
 after hatching. Embryos from larger broods hatch earlier and at a smaller
 size than those from smaller broods, which reduces their survival until 4
 weeks age. This indicates a trade-off between the number and viability of
 offspring that males can raise to the hatching stage, which could explain
 the high incidence of partial egg cannibalism in nest-brooding fishes - as
 a strategy to improve the survival of remaining offspring.  These
 results highlight the importance of considering conditions at the
 embryonic stage when evaluating the impact of early life conditions on
 viability and the adaptive value of reproductive decisions
DOI: 10.5061/dryad.76hdr7szh
title: Divergence in life-history traits among three populations of the sea snake Emydocephalus anulatus

description: Life-history traits such as rates of growth, survival and reproduction can
 vary though time within a single population, or through space among
 populations, due to abiotically-driven changes in resource availability.
 In terrestrial reptiles, parameters such as temperature and rainfall
 generate variation in life-histories – but other parameters likely are
 more important in marine systems. We studied three populations of sea
 snakes (Emydocephalus annulatus) in adjacent bays in the IndoPacific
 archipelago of New Caledonia. The extreme philopatry of individual snakes
 allows us to unambiguously allocate each animal to one of the three
 populations. Although water temperatures and rainfall do not differ over
 this small scale, one site experiences more intense winds, restricting
 opportunities for foraging. Our 18-year mark-recapture dataset
 (&gt;1,200 snakes, &gt;2,400 captures) reveals significant
 divergence among populations in life-history traits. Survival rates and
 population densities were similar among sites, but snakes at the most
 wind-exposed site (Anse Vata) exhibited lower body condition, slower
 growth, less frequent production of litters, and smaller litters.
 Weather-driven variation in feeding rates thus may affect life-history
 traits of marine snakes as well as their terrestrial counterparts, but
 driven by different parameters (e.g., wind exposure rather than variation
 in temperatures or rainfall).
description: Annual mark-recapture surveys of populations of snakes in three
 adjacent bays near Noumea, in New Caledonia.
description: N/A
DOI: 10.5061/dryad.rxwdbrvbh
title: Changes in temperature alter competitive interactions and overall structure of fig wasp communities

description: 1.     Organisms exist within
 ecological networks, connected through interactions such as parasitism,
 predation and mutualism which can modify their abundance and distribution
 within habitat patches. Differential species responses make it hard to
 predict the influence of climate change at the community scale.
 Understanding the interplay between climate and biotic interactions can
 improve our predictions of how ecosystems will respond to current global
 warming. 2.     We aim to understand
 how climate affects the multi-trophic biotic interactions as well as the
 community structure using the enclosed communities of wasps associated
 with figs as a study system. 3.     To
 examine the presence and strength of multi-trophic species interactions,
 we first characterized the multi-trophic community of fig wasps associated
 with Ficus racemosa and then applied hierarchical joint species
 distribution models, fitted to community monitoring data. We further
 evaluated the effect of climate on individual species trends as well as
 inter-specific interactions. 4.     We
 found that the competitive balance shifted to favour non-pollinating
 galling wasps and disadvantage the dominant pollinator in sub-optimal
 conditions. Further, sub-optimal conditions for galling wasps facilitated
 the occurrence of their specialized parasitoid, as changes cascaded across
 trophic levels and led to alternative community structures. Our results
 highlight the role of how species interactions can be modified across
 multiple trophic levels in a fig wasp community according to climate.
description: Fig wasps species abundance and composition based on long-term
 monitoring.
DOI: 10.5068/d1d11h
title: Refuge data for projections of avian assemblage change at U.S. National Wildlife Refuges

description: The National Wildlife Refuge System (NWRS) provides one of the United
 States’ greatest protected area networks for wildlife conservation. As
 climate changes beyond historical ranges of variability, refuge managers
 are confronted with assessing the utility of refuges, including how to
 best manage refuges both individually and as a system to help species cope
 with rapid change. Using published species distribution models, we
 projected species-specific changes in environmental suitability for 590
 native North American bird species under a 2°C future (~2050s under
 RCP8.5) at 525 refuges. We classified projected changes in suitability
 (i.e. improving, stable, or worsening suitability) and whether they
 crossed a model-derived persistence threshold at a refuge (i.e. potential
 colonization or potential extirpation). Overall, we found that a quarter
 of species (23% in summer, 26% in winter) could be different (i.e. turn
 over) across the refuge system despite protections. Seasonal communities
 are not equally affected, so managers should consider different strategies
 designed to benefit both breeding and non-breeding communities. We
 forecast a slight net species loss in summer, from a mean of 109.0 ± 0.8
 to 102.0 ± 0.7 species/refuge. In winter, we forecast a net gain in
 species, from a mean of 97.1 ± 2.2 to 118.5 ± 1.8 species/refuge. This
 includes an average of 12 species/refuge that may overwinter rather than
 migrate south. Refuges at northern latitudes will see relatively more
 turnover in species, while southern and coastal refuges will see fewer
 changes. Despite these species changes, dominant habitat association
 groups (e.g., waterbirds, forest birds) will generally stay the same
 across most of the NRWS. Some species may be lost from the entire NWRS and
 can benefit in the near term from targeted management. Regions of high
 turnover, extirpation, and colonization (i.e., at northern latitudes) can
 be prioritized for strategic additions of new refuges.
description: This dataset contains: 1. The GIS boundaries
 of the 525 U.S. National Wildlife Refuges (refuges) analyzed. Refuges are
 constrained to the lower 48 states due to availability of climate
 data. 2. A table of the full names of the 525 refuges
 and whether each refuge was buffered prior to analysis. For 107 refuges
 that were 0.01–4.9 km2 (median 1.4 km2) in size or that encompassed marine
 areas where we did not have projections (e.g., Oregon Islands National
 Wildlife Refuge), we first buffered the refuge by 2.5 km, an ecologically
 reasonable area for vagile birds to be using, before summarizing
 projections (see data repository for refuge buffer status).
description: 1-km resolution species distribution models used in this analysis
 were previously published and can be downloaded here: https://adaptwest.databasin.org/pages/audubon-survival-by-degrees/. All other scripts can be found here: https://github.com/audubongit/ClimateChangeBirdsFWS.
DOI: 10.5281/zenodo.17950259
title: Database experimental data (dataset 4 of 4) "Visualization and quantification of gas-liquid mass transfer in a sparger flow using a wire-mesh sensor", dataset 4 of 4, air series

description: ## DATABASE EXPERIMENTAL DATA (DATASET 4 OF 4) "VISUALIZATION AND QUANTIFICATION OF GAS-LIQUID MASS TRANSFER IN A SPARGER FLOW USING A WIRE-MESH SENSOR", DATASET 4 OF 4, TRACER SERIESReference Open-Access journal publication: Alvaro Ramos Perez, Terttaliisa Lind, Victor Petrov, Annalisa Manera, Horst-Michael Prasser, Visualization and quantification of gas–liquid mass transfer in a sparger flow using a wire-mesh sensor, Chemical Engineering Science, Volume 320, Part A, 2026, 122360, ISSN 0009-2509, doi:10.1016/j.ces.2025.122360.

## THIS DATA CORRESPONDS TO THE DATASET 4 OF 4, AIR SERIES. THE ENTIRE DATASET LIST OF THE PUBLICATION IS:-DATASET 1 OF 4, CALIBRATION SERIES-DATASET 2 OF 4, TRACER SERIES-DATASET 3A+3B OF 4, CO2 SERIES-DATASET 4 OF 4, AIR SERIES

## WMS DATA"README_WMS.txt": Description of data matrix "WMS.csv" and data format "WMS.zip"
DOI: 10.5281/zenodo.17950260
title: Database experimental data (dataset 4 of 4) "Visualization and quantification of gas-liquid mass transfer in a sparger flow using a wire-mesh sensor", dataset 4 of 4, air series

description: ## DATABASE EXPERIMENTAL DATA (DATASET 4 OF 4) "VISUALIZATION AND QUANTIFICATION OF GAS-LIQUID MASS TRANSFER IN A SPARGER FLOW USING A WIRE-MESH SENSOR", DATASET 4 OF 4, TRACER SERIESReference Open-Access journal publication: Alvaro Ramos Perez, Terttaliisa Lind, Victor Petrov, Annalisa Manera, Horst-Michael Prasser, Visualization and quantification of gas–liquid mass transfer in a sparger flow using a wire-mesh sensor, Chemical Engineering Science, Volume 320, Part A, 2026, 122360, ISSN 0009-2509, doi:10.1016/j.ces.2025.122360.

## THIS DATA CORRESPONDS TO THE DATASET 4 OF 4, AIR SERIES. THE ENTIRE DATASET LIST OF THE PUBLICATION IS:-DATASET 1 OF 4, CALIBRATION SERIES-DATASET 2 OF 4, TRACER SERIES-DATASET 3A+3B OF 4, CO2 SERIES-DATASET 4 OF 4, AIR SERIES

## WMS DATA"README_WMS.txt": Description of data matrix "WMS.csv" and data format "WMS.zip"