cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.um55nz
title: Occurrence Download

description: A dataset containing 53669 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melia azedarach L."
 ]
}

 The dataset includes 53669 records from 775 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009193-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8aqjw3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lolium multiflorum x rigidum subsp. rigidum"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009196-250127130748423/datasets/export for details.
DOI: 10.15468/dl.hxmbab
title: Occurrence Download

description: A dataset containing 891979 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cirsium vulgare (Savi) Ten."
 ]
}

 The dataset includes 891979 records from 3606 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009182-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4qt2dn
title: Occurrence Download

description: A dataset containing 64864 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Literature Occurrence"
 ]
 },
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Salmo trutta Linnaeus, 1758"
 ]
}

 The dataset includes 64864 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0251905-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ggvad4
title: Occurrence Download

description: A dataset containing 3562120 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "TaxonKey is Asteraceae"
 ]
}

 The dataset includes 3562120 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067207-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qwt62t
title: Occurrence Download

description: A dataset containing 75852 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Setaria pumila (Poir.) Roem. & Schult."
 ]
}

 The dataset includes 75852 records from 938 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007815-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dr6vwf
title: Occurrence Download

description: A dataset containing 250048 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "DatasetKey is Flora-On: occurrence data of the flora of mainland Portugal"
 ]
}

 The dataset includes 250048 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009906-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vww9gd
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Ligularia fargesii (Franch.) Diels"
 ]
}

 The dataset includes 12 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0288289-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qyevrs
title: Occurrence Download

description: A dataset containing 18364131 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "TaxonKey is Insecta"
 ]
}

 The dataset includes 18364131 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067208-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zsi8ny
title: Occurrence Download

description: A dataset containing 151 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sperchon denticulatus Koenike, 1895"
 ]
}

 The dataset includes 151 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008781-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jfag3n
title: Occurrence Download

description: A dataset containing 1736 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Leopardus Gray, 1842"
 ]
}

 The dataset includes 1736 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0251918-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pjiysp
title: Occurrence Download

description: A dataset containing 7158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zalophus californianus (Lesson, 1828)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7158 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009906-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uv4uh4
title: Occurrence Download

description: A dataset containing 8469 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Copestylum Macquart, 1846)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Observation, Specimen)",
 "Year is greater than 1945"
 ]
}

 The dataset includes 8469 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0279012-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ybmj5x
title: Occurrence Download

description: A dataset containing 364412769 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 {
 "not" : {
 "DegreeOfEstablishment" : [
 "is one of (cultivated)"
 ]
 }
 },
 "HasGeospatialIssue is FALSE",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 364412769 records from 10878 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067200-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4tkp2e
title: Occurrence Download

description: A dataset containing 237333 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rosa rugosa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 237333 records from 539 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012061-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.msa4gv
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galium tenuissimum",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012122-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5282/ubm/data.685
title: Raw data for "Reactivity of Electrophilic Cyclopropanes" (Pure & Applied Chemistry, 2023)

description: Kinetic data of ring opening reactions of electrophilic cyclopropanes with azide ions and NMR characterization of 2-(2-((4-methoxyphenyl)thio)ethyl)malononitrile.

This Supplementary Material is part of an article published in Pure and Applied Chemistry (doi.org/10.1515/pac-2023-0209).
DOI: 10.15468/dl.8bqpjt
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "and" : [
 "StateProvince is one of (Maine, Maine (ME), Maine (State))",
 "TaxonKey is Arctium lappa"
 ]
}

 The dataset includes 80 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012124-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eu7h7j
title: Occurrence Download

description: A dataset containing 49552 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "HasCoordinate is true",
 "Year is 1950"
 ]
}

 The dataset includes 49552 records from 145 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012123-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17192702
title: Random functions as data compressors for machine learning of molecular processes

description: This repository contains the results shown in manuscript titled Random functions as data compressors for machine learning of molecular processes, J. Debnath and G. Hummer, arXiv:2509.17937

In this repository, we have included:





An ipython notebook to recreate the results for Alanine Dipeptide







Dictionary objects to reproduce the results shown for NTL9 (backbone distances), Norleucine double mutant of Villin (backbone distances, c-alpha distances, shifted dihedral angles, heavy atom positions)
DOI: 10.5281/zenodo.17192703
title: Random functions as data compressors for machine learning of molecular processes

description: This repository contains the results shown in manuscript titled Random functions as data compressors for machine learning of molecular processes, J. Debnath and G. Hummer, arXiv:2509.17937

In this repository, we have included:





An ipython notebook to recreate the results for Alanine Dipeptide







Dictionary objects to reproduce the results shown for NTL9 (backbone distances), Norleucine double mutant of Villin (backbone distances, c-alpha distances, shifted dihedral angles, heavy atom positions)
DOI: 10.15468/dl.9s97vw
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "StateProvince is one of (Maine, Maine (ME), Maine (State))",
 "TaxonKey is Polygonum cuspidatum"
 ]
}

 The dataset includes 16 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012125-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2rp39s
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Antimima pygmaea)"
 ]
}

 The dataset includes 19 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012126-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14770767
title: Sentinel-5p reveals unexplained large wildfire carbon emissions in the Amazon in 2024

description: Global daily IFS-COMPO atmospheric compossition model simulations (Huijnen et al., 2019; https://doi.org/10.5194/gmd-12-1725-2019) of carbon monoxide total columns (CO-TC) for August and September 2024. IFS-COMPO model resolution is 0.5 degrees. Model CO-TCs are collocated with Sentinel-5p CO-TCs which are resampled and averaged onto the IFS-COMPO model grid provided that at least 50% of the model grid is covered by Sentinel-5p CO-TC data (Douros et al., 2023; https://doi.org/10.5194/GMD-16-509-2023). Files include IFS-COMPO CO-TCs with and without applying the Sentinel-5p CO averaging kernel, the associated resampled and averaged Sentinel-5p CO-TCs and the differences between IFS-COMPO CO-TC (with averaging kernel) and Sentinel-5p CO-TC (data array names: model_kernel, model_ref, retrieval, retrieval_min_model_kernel).

Note that GFA and TUD emission data can be found at www.sense4fire.eu, GFAS emission data via the COPERNICUS Data Store https://ads.atmosphere.copernicus.eu/datasets/cams-global-fire-emissions-gfas

 

·         daily NetCDF files

·         August and September 2024

·         0.5° degree spatial resolution

 

The NetCDF files variables

·         lon                                                                      longitude in degrees East

·         lat                                                                       latitude in degrees North

·         model_kernel                                                     CO modelled total column, modified with S5p averaging kernel

·         model_ref                                                           CO modelled total column, NO kernel application (“reference”)

·         retrieval                                                              CO total column (S5p retrievals)

·         retrieval_min_model_kernel                                CO total column difference between total S5p and IFS-COMPO (S5p averaging kernel applied) 

·         time                                                                    YYYY-MM-DD

 

Each tar file below consists of two months of daily collocated CIFS (= IFS-COMPO) model output for four model simulations runs identifiable with a unique  identifiers:

 

TROPOMIvsCIFS_b2jj_CO_2024_08_09_daily.tar

TROPOMIvsCIFS_b2ld_CO_2024_08_09_daily.tar

TROPOMIvsCIFS_b2mk_CO_2024_08_09_daily.tar

TROPOMIvsCIFS_b2my_CO_2024_08_09_daily.tar*

 

b2jj                  GFASv1.4 near real time emissions

b2ld                S4F-GFA

b2mk           S4F-GFA Amazon August-September 2024 factor 1.5 north of 15S

b2my           TUD-S4F August-September 2024
DOI: 10.5281/zenodo.14770766
title: Sentinel-5p reveals unexplained large wildfire carbon emissions in the Amazon in 2024

description: Global daily IFS-COMPO atmospheric compossition model simulations (Huijnen et al., 2019; https://doi.org/10.5194/gmd-12-1725-2019) of carbon monoxide total columns (CO-TC) for August and September 2024. IFS-COMPO model resolution is 0.5 degrees. Model CO-TCs are collocated with Sentinel-5p CO-TCs which are resampled and averaged onto the IFS-COMPO model grid provided that at least 50% of the model grid is covered by Sentinel-5p CO-TC data (Douros et al., 2023; https://doi.org/10.5194/GMD-16-509-2023). Files include IFS-COMPO CO-TCs with and without applying the Sentinel-5p CO averaging kernel, the associated resampled and averaged Sentinel-5p CO-TCs and the differences between IFS-COMPO CO-TC (with averaging kernel) and Sentinel-5p CO-TC (data array names: model_kernel, model_ref, retrieval, retrieval_min_model_kernel).

Note that GFA and TUD emission data can be found at www.sense4fire.eu, GFAS emission data via the COPERNICUS Data Store https://ads.atmosphere.copernicus.eu/datasets/cams-global-fire-emissions-gfas

 

·         daily NetCDF files

·         August and September 2024

·         0.5° degree spatial resolution

 

The NetCDF files variables

·         lon                                                                      longitude in degrees East

·         lat                                                                       latitude in degrees North

·         model_kernel                                                     CO modelled total column, modified with S5p averaging kernel

·         model_ref                                                           CO modelled total column, NO kernel application (“reference”)

·         retrieval                                                              CO total column (S5p retrievals)

·         retrieval_min_model_kernel                                CO total column difference between total S5p and IFS-COMPO (S5p averaging kernel applied) 

·         time                                                                    YYYY-MM-DD

 

Each tar file below consists of two months of daily collocated CIFS (= IFS-COMPO) model output for four model simulations runs identifiable with a unique  identifiers:

 

TROPOMIvsCIFS_b2jj_CO_2024_08_09_daily.tar

TROPOMIvsCIFS_b2ld_CO_2024_08_09_daily.tar

TROPOMIvsCIFS_b2mk_CO_2024_08_09_daily.tar

TROPOMIvsCIFS_b2my_CO_2024_08_09_daily.tar*

 

b2jj                  GFASv1.4 near real time emissions

b2ld                S4F-GFA

b2mk           S4F-GFA Amazon August-September 2024 factor 1.5 north of 15S

b2my           TUD-S4F August-September 2024
DOI: 10.15468/dl.9gsceg
title: Occurrence Download

description: A dataset containing 53676 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fulica atra",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 53676 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012011-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2eh3qy
title: Occurrence Download

description: A dataset containing 400 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galium verum",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 400 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012129-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gmasat
title: Occurrence Download

description: A dataset containing 8485 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galium verum",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8485 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012127-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tep5j2
title: Occurrence Download

description: A dataset containing 1039 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rosa wichuraiana",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1039 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012131-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.38kxxc
title: Occurrence Download

description: A dataset containing 178 species occurrences available in GBIF matching the query:
{
 "and" : [
 "StateProvince is one of (Maine, Maine (ME), Maine (State))",
 "TaxonKey is Rumex crispus"
 ]
}

 The dataset includes 178 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012132-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pwaahz
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-99.30755 25.43731,-99.75461 22.21853,-96.49112 18.10564,-90.67943 18.08329,-87.32653 17.77035,-85.00186 23.35852,-89.42768 24.76673,-91.35001 19.80445,-94.6582 19.06681,-96.24524 24.78909,-99.30755 25.43731))",
 "OccurrenceStatus is Present",
 "TaxonKey is Epinephelus itajara",
 "Year 2000-2025"
 ]
}

 The dataset includes 19 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012136-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bpzpmr
title: Occurrence Download

description: A dataset containing 45778 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "HasCoordinate is true",
 "Year is 1951"
 ]
}

 The dataset includes 45778 records from 154 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012134-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.297dse
title: Occurrence Download

description: A dataset containing 14208 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Herbario Jardín Botánico de Cartagena \"Guillermo Piñeres\""
 ]
}

 The dataset includes 14208 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012138-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v4qaku
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bulbostylis pauciflora"
 ]
}

 The dataset includes 90 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012137-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yjh7y2
title: Occurrence Download

description: A dataset containing 725 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Antirrhinum braun-blanquetii)"
 ]
}

 The dataset includes 725 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012139-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.avqqua
title: Occurrence Download

description: A dataset containing 832 species occurrences available in GBIF matching the query:
{
 "and" : [
 "StateProvince is one of (Maine, Maine (ME), Maine (State))",
 "TaxonKey is Tanacetum vulgare"
 ]
}

 The dataset includes 832 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012140-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.