cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/97sdcb5273
title: A Single-copy Knock In Translating Ribosome ImmunoPrecipitation tool kit for tissue specific profiling of actively translated mRNAs in C. elegans. Wester and Lanjuin et al.

description: Translating Ribosome Affinity Purification (TRAP) methods have emerged as a powerful approach to profile actively translated transcripts in specific cell and tissue types. Epitope tagged ribosomal subunits are expressed in defined cell populations and used to pull down ribosomes and their associated mRNAs, providing a snapshot of cell-type specific translation occurring in that space and time. Current TRAP toolkits available to the C. elegans community have been built using multi-copy arrays, randomly integrated in the genome. Here we introduce a Single-copy Knock In Translating Ribosome ImmunoPrecipitation (SKI TRIP) tool kit, a collection of C. elegans strains engineered by CRISPR in which tissue specific expression of FLAG tagged ribosomal subunit protein RPL-22 is driven by cassettes present in single copy from defined sites in the genome. In depth characterization of the SKI TRIP strains and methodology shows that 3xFLAG tagged RPL-22 expressed from its endogenous locus or within defined cell types incorporates into actively translating ribosomes and can be used to efficiently and cleanly pull down cell-type specific transcripts without impacting overall mRNA translation or fitness of the animal. We propose SKI TRIP use for the study of processes that are acutely sensitive to changes in translation, such as aging.
DOI: 10.17632/jcrtycvdpc
title: Clinical studies of GLP-1RA, DPP-4i, and SGLT-2i mediated cardiovascular protection

description: Clinical studies of GLP-1RA, DPP-4i, and SGLT-2i mediated cardiovascular protection
DOI: 10.17632/jhtn73fz33
title: First-episode mild depression in young adults is a pre-proatherogenic condition even in the absence of subclinical metabolic syndrome: increased free cholesterol as a key factor.

description: The data set used in the statistical analysis of our research.
DOI: 10.17632/kct2csp7rm
title: Data from the manuscript by Crémière et al., to be published by Geochimica et Cosmochimica Acta as "Balancing sulfur fluxes in a closed basin lake, lessons from the early Eocene Green River Formation".

description: Inorganic and organic geochemical results of the Coyote Wash core.
DOI: 10.17632/sbmvcs645v
title: In vitro apoptotic effects of statins in combination with erlotinib on the p53-mutated erlotinib-resistant NSCLC cell lines

description: In this dataset in vitro apoptotic effects of the indicated statins alone and in combination with erlotinib have been investigated via MTT, light microscopy, caspase-3 activity and PARP cleavage via western blot. Also, lipid dependency of the apoptotic activity of indicated statins alone or combined with erlotinib via the mevalonate pathway (MVA). This dataset may help researchers to design further experiments with fluvastatin and pitavastatin to reveal their anti-tumor effects on various types of cancers.
DOI: 10.17632/46j2m7vync
title: Table 1

description: Literature Review of Cases with L-2-HGA
DOI: 10.17632/5r5mbdd9jh
title: feedback hierarchy

description: In this study, we examined the relationships between feedback hierarchy and feedback reactions, as well as the mediating role of perceived threat to self-worth and moderating roles of guilt-proneness and shame-proneness. Our theoretical model was tested using 779 observations collected from 212 full-time employees. Consistent with our theoretical arguments, results indicated that task-focused feedback leads to more positive feedback reactions because it poses less threat to self-worth while self-focused feedback leads to more negative feedback reactions because feedback recipients perceive high levels of threat to self-worth. Furthermore, in an exploratory analysis, we found a cross-level moderating effects of guilt-proneness and shame-proneness on the direct effect of feedback hierarchy on feedback reactions such that guilt-proneness weaken the relationship between feedback hierarchy and feedback reactions, and shame-proneness strengthen the relationship between feedback hierarchy and feedback reactions. We discuss theoretical implications of our findings as well as future research directions.
DOI: 10.17632/8rgs6n6hjx
title: Research data

description: Raw research data
DOI: 10.17632/95hp5phnc2
title: Neferine inhibits BMECs pyroptosis and maintains blood-brain barrier integrity in ischemic stroke by triggering a cascade reaction of PGC-1α

description: Blood-brain barrier disruption is a critical pathological event in the progression of ischemic stroke (IS). Most studies regarding the therapeutic potential of neferine (Nef) on IS have focused on neuroprotective effect. However, whether Nef attenuates BBB disruption during IS is unclear. We here used mice underwent transient middle cerebral artery occlusion (tMCAO) in vivo and bEnd.3 cells exposed to oxygen-glucose deprivation/reoxygenation (OGD/R) injury in vitro to simulate cerebral ischemia. We showed that Nef reduced neurobehavioral dysfunction and protected brain microvascular endothelial cells and BBB integrity. Molecular docking, short interfering (Si) RNA and plasmid transfection results showed us that PGC-1α was the most binding affinity of biological activity protein for Nef. And verification experiments were showed that Nef upregulated PGC-1α expression to reduce mitochondrial oxidative stress and promote TJ proteins expression, further improves the integrity of BBB in mice. Intriguingly, our study showed that neferine is a natural PGC-1α activator and illustrated the mechanism of specific binding site. Furthermore, we have demonstrated Nef reduced mitochondria oxidative damage and ameliorates endothelial inflammation by inhibiting pyroptosis to improve BBB permeability through triggering a cascade reaction of PGC-1α via regulation of PGC-1α/NLRP3/GSDMD signaling pathway to maintain the integrity of BBB in ischemia/reperfusion injury.
DOI: 10.17632/vwfk4p8n4n
title: Code for the paper

description: Code for the paper of Fig.2、3、4
DOI: 10.17632/ztgn8tbz3b
title: LINF_340011000

description: Gamma-soluble NSF attachment protein (SNAP-gamma)
Leishmania infantum (strain JPCM5)
DOI: 10.17632/344bmr7ppf
title: Multiple Sequence Alignment: Novelty and phylogenetic affinities of a new family of tapeworms (Cestoda: Rhinebothriidea) from endangered sawfish and guitarfish

description: A multiple sequence alignment (MSA) of 1,475 base pairs (bp) of the D1–D3 region of the 28S rRNA for the elasmobranch tapeworm order Rhinebothriidea used in a maximum likelihood (ML) phylogenetic analysis to support the establishment of a novel family within the order, as well as the description of novel species within the family. The MSA includes 75 ingroup and four outgroup sequences. Of the 75 ingroup sequences, six were newly-generated as part of this study, and are designated by "KW" or "JW" laboratory numbers. All remaining ingroup and outgroup sequences were downloaded from GenBank.
DOI: 10.17632/54gnp4xvn5
title: Interference of Hb D Variant on the Measurement of HbA1c by Lifotronic H8 Ion-Exchange High-Performance Liquid Chromatography (HPLC)

description: Hemoglobin A1c (HbA1c) is used to monitor long-term glycemic control. In the presence of hemoglobin variants, erroneous results may be observed in HbA1c measurements. In this case, we describe a patient whose hemoglobin A1c (HbA1c) result was measured with an ion-exchange high-performance liquid chromatography (HPLC) device and found to be 3.1%. Hemoglobin D(HbD) variant was detected in electrophoresis measurements for further investigation, and the patient's true HbA1c value was 5.1%. In case of very low HbA1c results or measurements inconsistent with the patient's clinic, analysis with methods such as electrophoresis resistant to hemoglobin variant interferences is recommended instead of ion exchange HPLC.
DOI: 10.6084/m9.figshare.26647014.v1
title: Additional file 27 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 27. Data supporting Fig. S2.
DOI: 10.6084/m9.figshare.26647017
title: Additional file 28 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 28. Data supporting Fig. S3.
DOI: 10.6084/m9.figshare.26647017.v1
title: Additional file 28 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 28. Data supporting Fig. S3.
DOI: 10.6084/m9.figshare.26647020
title: Additional file 29 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 29. Data supporting Fig. S4.
DOI: 10.6084/m9.figshare.26647020.v1
title: Additional file 29 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 29. Data supporting Fig. S4.
DOI: 10.1594/pangaea.220612
title: Mineral composition of bulk sediment from Hole 33-316
DOI: 10.6084/m9.figshare.26647023
title: Additional file 30 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 30. Data supporting Fig. S5.
DOI: 10.6084/m9.figshare.26647023.v1
title: Additional file 30 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 30. Data supporting Fig. S5.
DOI: 10.6084/m9.figshare.26647026
title: Additional file 31 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 31. Data supporting Fig. S6.
DOI: 10.6084/m9.figshare.26647026.v1
title: Additional file 31 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 31. Data supporting Fig. S6.
DOI: 10.6084/m9.figshare.26647029
title: Additional file 32 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 32. Data supporting Fig. S7.
DOI: 10.6084/m9.figshare.26647029.v1
title: Additional file 32 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 32. Data supporting Fig. S7.
DOI: 10.6084/m9.figshare.26647032
title: Additional file 33 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 33. Data supporting Fig. S8.
DOI: 10.6084/m9.figshare.26647032.v1
title: Additional file 33 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 33. Data supporting Fig. S8.
DOI: 10.6084/m9.figshare.26647035
title: Additional file 34 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 34. Data supporting Fig. S9.
DOI: 10.6084/m9.figshare.26647035.v1
title: Additional file 34 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 34. Data supporting Fig. S9.
DOI: 10.1594/pangaea.112874
title: Net O2 and integrated net O2 productivity at station AT_II-119/4_10-1
DOI: 10.1594/pangaea.785712
title: (Table S3) Calcium carbonate content in ODP Hole 113-690C and DSDP Site 86-577

description: Sediment depth is given in mbsf. Analysis of ODP Hole 113-690C samples at University of Hawai'i at Manoa, analysis of DSDP Site 86-577 samples at Woods Hole Institute.
DOI: 10.6084/m9.figshare.26647038
title: Additional file 35 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 35. Data supporting Fig. S10.
DOI: 10.6084/m9.figshare.26647038.v1
title: Additional file 35 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 35. Data supporting Fig. S10.
DOI: 10.1594/pangaea.743881
title: (Table 3) Maceral percentages and mean vitrinite-reflectance values of ODP Leg 103 samples
DOI: 10.1594/pangaea.803615
title: (Table 3) Organic-petrographical composition of ODP Leg 164 sites

description: Sediment depth is given in mbsf. Value of &lt;1 = present. The composition of the structured organic matter was determined by a semiquantitative estimation method that is based on a procedure applied successfully for vegetation surveys (Hufnagel and Porth, 1989).
DOI: 10.1594/pangaea.484345
title: Hydrochemistry measured on water bottle samples at station SAtl_1983_6N_7S_9N/109-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.6084/m9.figshare.24669855
title: Additional file 1 of Elucidating the role of RBM5 in osteoclastogenesis: a novel potential therapeutic target for osteoporosis

description: Additional file 1: Table S1. The primers used for RT-qPCR analysis.
DOI: 10.6084/m9.figshare.24669855.v1
title: Additional file 1 of Elucidating the role of RBM5 in osteoclastogenesis: a novel potential therapeutic target for osteoporosis

description: Additional file 1: Table S1. The primers used for RT-qPCR analysis.
DOI: 10.1594/pangaea.484115
title: Hydrochemistry measured on water bottle samples at station NAtl_1981_6N_51N/119-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484372
title: Hydrochemistry measured on water bottle samples at station SAtl_1983_6N_7S_9N/98-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484207
title: Hydrochemistry measured on water bottle samples at station NAtl_1982_6N_58W/20-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484208
title: Hydrochemistry measured on water bottle samples at station NAtl_1982_6N_58W/21-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484395
title: Hydrochemistry measured on water bottle samples at station SAVE1/33-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484209
title: Hydrochemistry measured on water bottle samples at station NAtl_1982_6N_58W/22-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484117
title: Hydrochemistry measured on water bottle samples at station NAtl_1981_6N_51N/121-2

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484125
title: Hydrochemistry measured on water bottle samples at station NAtl_1981_6N_51N/215-2

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484131
title: Hydrochemistry measured on water bottle samples at station NAtl_1981_6N_58N/127-2

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484210
title: Hydrochemistry measured on water bottle samples at station NAtl_1982_6N_58W/23-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484396
title: Hydrochemistry measured on water bottle samples at station SAVE1/34-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484132
title: Hydrochemistry measured on water bottle samples at station NAtl_1981_6N_58N/128-2

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484211
title: Hydrochemistry measured on water bottle samples at station NAtl_1982_6N_58W/24-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484212
title: Hydrochemistry measured on water bottle samples at station NAtl_1982_6N_58W/25-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484397
title: Hydrochemistry measured on water bottle samples at station SAVE1/35-4

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484213
title: Hydrochemistry measured on water bottle samples at station NAtl_1982_6N_58W/26-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484138
title: Hydrochemistry measured on water bottle samples at station NAtl_1981_6N_58N/134-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484399
title: Hydrochemistry measured on water bottle samples at station SAVE1/37-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484149
title: Hydrochemistry measured on water bottle samples at station NAtl_1981_6N_58N/177-3

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484400
title: Hydrochemistry measured on water bottle samples at station SAVE1/38-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.6084/m9.figshare.24670002
title: Additional file 1 of Evaluating the association of biallelic OGDHL variants with significant phenotypic heterogeneity

description: Additional file 1: Table S1. List of primer sequences.
DOI: 10.6084/m9.figshare.26629084.v1
title: Additional file 16 of Cross-tissue patterns of DNA hypomethylation reveal genetically distinct histories of cell development

description: Additional file 16: Table S5. List of 79 summary statistic files used for S-LDSC analyses.
DOI: 10.1594/pangaea.484152
title: Hydrochemistry measured on water bottle samples at station NAtl_1981_6N_58N/181-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484214
title: Hydrochemistry measured on water bottle samples at station NAtl_1982_6N_58W/27-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.6084/m9.figshare.24670002.v1
title: Additional file 1 of Evaluating the association of biallelic OGDHL variants with significant phenotypic heterogeneity

description: Additional file 1: Table S1. List of primer sequences.
DOI: 10.15156/bio/sh0194961.10fu
title: SH0194961.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0194962.10fu
title: SH0194962.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.