cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/s0qzne
title: Proteocephalid tapeworms (Cestoda: Onchoproteocephalidea) of loaches (Cobitoidea): Evidence for monophyly and high endemism of parasites in the Far East

description: This dataset contains the digitized treatments in Plazi based on the original journal article Tomáš Scholz, Alain de Chambrier, Takeshi Shimazu, Alexey Ermolenko, Andrea Waeschenbach (2017): Proteocephalid tapeworms (Cestoda: Onchoproteocephalidea) of loaches (Cobitoidea): Evidence for monophyly and high endemism of parasites in the Far East. Parasitology International 66: 871-883, DOI: 10.1016/j.parint.2016.09.016
DOI: 10.5281/zenodo.797577
title: Allscale: Data For The Ipic3D Pilot

description: These files correspond to the test cases for the iPIC3D pilot to simulate the formation of the Earth's radiation belts on various scales.
DOI: 10.15468/xxtmrr
title: Three Species of the Genus Agroeca (Araneae: Clubionidae) from Japan, Including a New Species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Hayashi, Toshi (1992): Three Species of the Genus Agroeca (Araneae: Clubionidae) from Japan, Including a New Species. Acta arachnologica 41 (2): 133-137, DOI: 10.5281/zenodo.848670
DOI: 10.17632/hy8dfmj9w9.2
title: Data for: The Wirrda Well and Acropolis prospects Gawler Craton, South Australia: insights into evolving fluid conditions through apatite chemistry

description: Appendices A, B, C, D and E (Krneta et al., J. Geochem Explor)
DOI: 10.5281/zenodo.848539
title: Allscale: Data For The Ipic3D Pilot

description: These files correspond to the test cases for the iPIC3D pilot to simulate the formation of the Earth's radiation belts on various scales.
DOI: 10.5517/ccdc.csd.cc1n6523
title: CCDC 1525264: Experimental Crystal Structure Determination

description: Related Article: Atefeh Sahraei, Hadi Kargar, Mohammad Hakimi, Muhammad Nawaz Tahir|2017|Acta Fac.Rer.Nat.U.Com.Chim.|42|483|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1n6534
title: CCDC 1525265: Experimental Crystal Structure Determination

description: Related Article: Atefeh Sahraei, Hadi Kargar, Mohammad Hakimi, Muhammad Nawaz Tahir|2017|Acta Fac.Rer.Nat.U.Com.Chim.|42|483|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1nybvs
title: CCDC 1547546: Experimental Crystal Structure Determination

description: Related Article: Adem Donmez, Gorkem Oylumluoglu, M. Burak Coban, Cagdas Kocak, Muhittin Aygun, Hulya Kara|2017|J.Mol.Struct.|1149|569|doi:10.1016/j.molstruc.2017.08.027
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3886/e100924v1
title: Work Happiness among ICT Professionals

description: Study among ICT Professionals in Malaysia with 393 samples. <br>
DOI: 10.5281/zenodo.848775
title: Meta Information For Chirila Database

description: Gloss forms, language information (standard and varieties), and sources for Chirila database (Bowern 2016).

Funded by NSF grants BCS-0844550 and BCS-1423711.
DOI: 10.5281/zenodo.848776
title: Meta Information For Chirila Database

description: Gloss forms, language information (standard and varieties), and sources for Chirila database (Bowern 2016).

Funded by NSF grants BCS-0844550 and BCS-1423711.
DOI: 10.5281/zenodo.848557
title: Project Data: Industrial Innovation In Transition - Coded Interview Data

description: Industrial innovation has changed fundamentally over the last ten years. Companies have widely adopted new tools such as open innovation, innovation networks and ecosystems, systemic innovations, public/private partnerships, crowd sourcing, social media, and demand based innovations. These new practices have improved the innovation<br>
capabilities of companies and brought new challenges to the traditional innovation policy instruments. This project<br>
examined widely companies’ current use of new innovation practices around Europe and the good practice experience of their use. It also evaluated existing innovation policy portfolios at national and European levels, and analyzed the differences between innovation processes and management practices in different industrial sectors. With 694 interviews of company representatives the project covered five key industrial sectors in 11 EU Member States.
DOI: 10.5281/zenodo.848558
title: Project Data: Industrial Innovation In Transition - Coded Interview Data

description: Industrial innovation has changed fundamentally over the last ten years. Companies have widely adopted new tools such as open innovation, innovation networks and ecosystems, systemic innovations, public/private partnerships, crowd sourcing, social media, and demand based innovations. These new practices have improved the innovation<br>
capabilities of companies and brought new challenges to the traditional innovation policy instruments. This project<br>
examined widely companies’ current use of new innovation practices around Europe and the good practice experience of their use. It also evaluated existing innovation policy portfolios at national and European levels, and analyzed the differences between innovation processes and management practices in different industrial sectors. With 694 interviews of company representatives the project covered five key industrial sectors in 11 EU Member States.
DOI: 10.5258/soton/394707
title: Physically micromachined cantilever upon an integrated optical fiber

description: Dataset supports 'Integrated Optical Fiber-tip Cantilevers' published in the journal IEEE Sensors.

Calibration of spectral deflection
DOI: 10.17632/4gwjjk47sz.2
title: Scrambled eggs - Supplementary Tables

description: Supplementary data for the development of a molecular diagnostic workflow for Fasciola species specific detection from faecal samples.
DOI: 10.17632/9zfzv84p8f.2
title: Scrambled eggs - raw data and correlation graphs

description: Raw data for the development of a molecular diagnostic workflow for Fasciola species specific detection from faecal samples.
DOI: 10.5258/soton/d0191
title: High-quality metamaterial dispersive grating on the facet of an optical fiber

description: Experimental and simulation data for the paper: Savinov, V & Zheludev, N 2017, 'High-quality metamaterial dispersive grating on the facet of an optical fiber' Applied Physics Letters.Dataset includes underlying material for: Fig1 - raw SEM images Fig2 - run Analyze_NegBatch3_Fib1.m in MATLAB. Explanations are in the script file Fig3 - run PlotCOMSOLData.m in MATLAB. Explanations are in the script file Fig4 - run PhaseDiffAna_CorrectDerrriv.m in MATLAB. Explanations are in the script file
DOI: 10.5517/ccdc.csd.cc1nt3dz
title: CCDC 1543471: Experimental Crystal Structure Determination

description: Related Article: Snehasish Thakur, Sourav Roy, Antonio Bauzá, Antonio Frontera, Shouvik Chattopadhyay|2017|Inorg.Chim.Acta|467|212|doi:10.1016/j.ica.2017.07.056
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1nt3f0
title: CCDC 1543472: Experimental Crystal Structure Determination

description: Related Article: Snehasish Thakur, Sourav Roy, Antonio Bauzá, Antonio Frontera, Shouvik Chattopadhyay|2017|Inorg.Chim.Acta|467|212|doi:10.1016/j.ica.2017.07.056
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.848778
title: Pama-Nyungan Cognate Coding

description: Archival copy of phylogenetic coding.
DOI: 10.5281/zenodo.848777
title: Pama-Nyungan Cognate Coding

description: Archival copy of phylogenetic coding.
DOI: 10.5287/bodleian:prxyqyvmk
title: Magnetic targeting to enhance microbubble delivery in an occluded micro arterial bifurcation
DOI: 10.17632/dch3b2d7b6.1
title: Data for: Individual host taxa may resist the climate-mediated trend in herbivory: Cenozoic herbivory patterns in western North American oaks

description: Insect herbivory and climatic variables used in our analysis of herbivory patterns through time in floras from western North America.
DOI: 10.24388/x40000012_2
title: A. K. Das, C.-J. Sung, Y. Zhang, G. Mittal, Int. J. Hydrogen Energy 38 (2012) 6901-6911, Mixture #1, 30 bar series, point 2

description: Initial composition: H2 O2 N2
DOI: 10.15468/zzvwht
title: Fauna of West Bengal- Araneae: Spiders- Subfamily Corinnidae

description: This dataset contains the digitized treatments in Plazi based on the original book chapter Biswas, B., Biswas, K (1992): Fauna of West Bengal- Araneae: Spiders- Subfamily Corinnidae. In: Fauna of West Bengal Part 3 (Arachnida and acari). Calcutta, India: Zoological Survey of India: 422-428, DOI: 10.5281/zenodo.892221
DOI: 10.24388/x40000012_3
title: A. K. Das, C.-J. Sung, Y. Zhang, G. Mittal, Int. J. Hydrogen Energy 38 (2012) 6901-6911, Mixture #1, 30 bar series, point 3

description: Initial composition: H2 O2 N2
DOI: 10.24388/x40000012_4
title: A. K. Das, C.-J. Sung, Y. Zhang, G. Mittal, Int. J. Hydrogen Energy 38 (2012) 6901-6911, Mixture #1, 30 bar series, point 4

description: Initial composition: H2 O2 N2
DOI: 10.5517/ccdc.csd.cc1p27jj
title: CCDC 1551287: Experimental Crystal Structure Determination

description: Related Article: Łukasz Szeleszczuk, Tomasz Gubica, Andrzej Zimniak, Dariusz M. Pisklak, Kinga Dąbrowska, Michał K. Cyrański, Marianna Kańska|2017|Chem.Phys.Lett.|686|7|doi:10.1016/j.cplett.2017.08.028
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1p27kk
title: CCDC 1551288: Experimental Crystal Structure Determination

description: Related Article: Łukasz Szeleszczuk, Tomasz Gubica, Andrzej Zimniak, Dariusz M. Pisklak, Kinga Dąbrowska, Michał K. Cyrański, Marianna Kańska|2017|Chem.Phys.Lett.|686|7|doi:10.1016/j.cplett.2017.08.028
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/nvx2n3jgdp.1
title: Data for: Nocturnal motor activity and light exposure: objective actigraphy-based marks of melancholic and non-melancholic depressive disorder. Brief report.

description: These are the raw data used in all analyses. All chronobiological variables were exported to "El temps" software for quantification of rest-activity and light exposure rhythms.
DOI: 10.5281/zenodo.10653147
title: Dataset related to article "Exploring a novel composite method using non-contrast EUS enhanced microvascular imaging and cyst fluid analysis to differentiate pancreatic cystic lesions"

description: This record contains raw data related to article “Exploring a novel composite method using non-contrast EUS enhanced microvascular imaging and cyst fluid analysis to differentiate pancreatic cystic lesions"

Abstract



 Background and aims:  Differentiating pancreatic cystic lesions (PCLs) remains a diagnostic challenge. The use of high-definition imaging modalities which detect tumor microvasculature have been described in solid lesions. We aim to evaluate the usefulness of cystic microvasculature when used in combination with cyst fluid biochemistry to differentiate PCLs.

 Methods:  We retrospectively analyzed 110 consecutive patients with PCLs from 2 Italian Hospitals who underwent EUS with H-Flow and EUS fine needle aspiration to obtain cystic fluid. The accuracy of fluid biomarkers was evaluated against morphological features on radiology and EUS. Gold standard for diagnosis was surgical resection. A clinical and radiological follow up was applied in those patients who were not resected because not surgical indication and no signs of malignancy were shown.

 Results:  Of 110 patients, 65 were diagnosed with a mucinous cyst, 41 with a non-mucinous cyst, and 4 with an undetermined cyst. Fluid analysis alone yielded 76.7% sensitivity, 56.7% specificity, 77.8 positive predictive value (PPV), 55.3 negative predictive value (NPV) and 56% accuracy in diagnosing pancreatic cysts alone. Our composite method yielded 97.3% sensitivity, 77.1% specificity, 90.1% PPV, 93.1% NPV, 73.2% accuracy.

 Conclusions:  This new composite could be applied to the holistic approach of combining cyst morphology, vascularity, and fluid analysis alongside endoscopist expertise.
DOI: 10.6084/m9.figshare.25211531
title: Essential Oils Data

description: Spatial Habitat Suitability Prediction of Essential Oil Wild Plants on Indonesia’s Degraded Lands
DOI: 10.6084/m9.figshare.7006751.v1
title: Additional file 11: of Nascent RNA sequencing analysis provides insights into enhancer-mediated gene regulation

description: Table S5. Rank of upregulated enhancers upon Hdac3 deletion by NRSA. (XLSX 123Â kb)
DOI: 10.11583/dtu.19692238.v2
title: Interstitial and Adsorbate Structure Database

description: This dataset contains DFT relaxed atomic structures and total energies of 2D materials doped with single intrinisic and extrinsic point defects in interstitial and adsorption site positions. The database is stored in the ASE Database format and features additional information <em>via</em> KVPs such as formation energies ('eform'), dopant atom ('dopant'), host formula ('host'), <em>etc.</em>
<br>
A detailed description of the data and how it was generated will follow in manuscript form.
<br>
Log:

 An updated version of the database with improved convergence was uploaded (24.06.2022)
 Updated funding information (08.07.2022)
DOI: 10.6084/m9.figshare.7006781
title: Additional file 16: of Nascent RNA sequencing analysis provides insights into enhancer-mediated gene regulation

description: Table S6. Rank of the previously reported three enhancers regulating KIT. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.7006781.v1
title: Additional file 16: of Nascent RNA sequencing analysis provides insights into enhancer-mediated gene regulation

description: Table S6. Rank of the previously reported three enhancers regulating KIT. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.7006784.v1
title: Additional file 1: of Nascent RNA sequencing analysis provides insights into enhancer-mediated gene regulation

description: Table S1. Identified enhancers using K562 GRO-seq (S1a), GM12878 GRO-seq (S1b), two replicates of U2OS GRO-seq (GSM1634453 (S1c) & GSM1634455 (S1d)), and K562 PRO-seq (S1e). (XLSX 1158Â kb)
DOI: 10.6084/m9.figshare.16960538
title: Additional file 9 of Transcriptome-wide N6-methyladenosine (m6A) methylation in watermelon under CGMMV infection

description: Additional file 9: Supplementary file 9. The m6A modification level of DEGs involved in immune responses and the production of siRNA involved in RNA interference in this study.
DOI: 10.6084/m9.figshare.16960489
title: Additional file 6 of Metaproteomics reveals insights into microbial structure, interactions, and dynamic regulation in defined communities as they respond to environmental disturbance

description: Additional file 6.
DOI: 10.5281/zenodo.10652986
title: Data for the article "Mechanisms of Electrical Switching of Ultrathin CoO/Pt Bilayers"

description: Experiments were performed at the CIRCE beamline at ALBA Synchrotron with the collaboration of ALBA staff. M.K. acknowledges support from the Graduate School of Excellence Materials Science in Mainz (MAINZ) DFG 266, the DAAD (Spintronics network, Project No. 57334897). We acknowledge that this work is funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)—TRR 173-268565370 (Projects A01 and B02). This project has received funding from the European Union’s Horizon 2020 research and innovation programme under Grant Agreement No. 863155 (s-Nebula). A.R. and B.B. acknowledge funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 860060 (ITN MagnEFi). This work is also supported by ERATO “Spin Quantum Rectification Project” (Grant No. JPMJER1402) and the Grant-in-Aid for Scientific Research on Innovative Area, “Nano Spin Conversion Science” (Grant No. JP26103005), Grant-in-Aid for Scientific Research (S) (Grant No. JP19H05600), Grant-in-Aid for Scientific Research (C) (Grant No. JP20K05297) from JSPS KAKENHI. R.R. also acknowledges support from the Grant RYC 2019-026915-I and the Project TED2021-130930B-I00 funded by the MCIN/AEI/10.13039/501100011033 and by the ESF investing in your future and the European Union NextGenerationEU/PRTR,  the Xunta de Galicia (ED431F 2022/04, ED431B 2021/013, Centro Singular de Investigación de Galicia Accreditation 2019-2022, ED431G 2019/03) and the European Union (European Regional Development Fund - ERDF).
DOI: 10.5281/zenodo.10652987
title: Data for the article "Mechanisms of Electrical Switching of Ultrathin CoO/Pt Bilayers"

description: Experiments were performed at the CIRCE beamline at ALBA Synchrotron with the collaboration of ALBA staff. M.K. acknowledges support from the Graduate School of Excellence Materials Science in Mainz (MAINZ) DFG 266, the DAAD (Spintronics network, Project No. 57334897). We acknowledge that this work is funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)—TRR 173-268565370 (Projects A01 and B02). This project has received funding from the European Union’s Horizon 2020 research and innovation programme under Grant Agreement No. 863155 (s-Nebula). A.R. and B.B. acknowledge funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 860060 (ITN MagnEFi). This work is also supported by ERATO “Spin Quantum Rectification Project” (Grant No. JPMJER1402) and the Grant-in-Aid for Scientific Research on Innovative Area, “Nano Spin Conversion Science” (Grant No. JP26103005), Grant-in-Aid for Scientific Research (S) (Grant No. JP19H05600), Grant-in-Aid for Scientific Research (C) (Grant No. JP20K05297) from JSPS KAKENHI. R.R. also acknowledges support from the Grant RYC 2019-026915-I and the Project TED2021-130930B-I00 funded by the MCIN/AEI/10.13039/501100011033 and by the ESF investing in your future and the European Union NextGenerationEU/PRTR,  the Xunta de Galicia (ED431F 2022/04, ED431B 2021/013, Centro Singular de Investigación de Galicia Accreditation 2019-2022, ED431G 2019/03) and the European Union (European Regional Development Fund - ERDF).
DOI: 10.6084/m9.figshare.7006799.v1
title: Additional file 5: of Nascent RNA sequencing analysis provides insights into enhancer-mediated gene regulation

description: Table S2. Transcriptional changes in gene body regions (S2a) and promoter-proximal regions (S2b) for active genes in Hdac3 KO vs. WT mouse livers. (XLSX 2301Â kb)
DOI: 10.6084/m9.figshare.7006811
title: Additional file 9: of Nascent RNA sequencing analysis provides insights into enhancer-mediated gene regulation

description: Table S4. Transcriptional changes of active enhancers upon Hdac3 deletion. (XLSX 264Â kb)
DOI: 10.6084/m9.figshare.16960505.v1
title: Additional file 11 of Transcriptome-wide N6-methyladenosine (m6A) methylation in watermelon under CGMMV infection

description: Additional file 11: Supplementary file 11. The response patterns of watermelon m6A elements to CGMMV infection in RNA-seq data.
DOI: 10.6084/m9.figshare.16960511.v1
title: Additional file 13 of Transcriptome-wide N6-methyladenosine (m6A) methylation in watermelon under CGMMV infection

description: Additional file 13: Supplementary file 13. Primers used for m6A-immunoprecipitation(IP)-qPCR (m6A -IP-qPCR) and Real-time quantitative PCR (qPCR).
DOI: 10.6084/m9.figshare.7531112.v1
title: Additional file 3: of Characterization of miRNA profiles in the mammary tissue of dairy cattle in response to heat stress

description: The differential expression of miRNAs in heat stressed and non-heat stressed groups. (XLS 33 kb)
DOI: 10.6084/m9.figshare.21679097
title: AIM2 inflammasome activation may mediate high mobility group box 1 release in murine allergic rhinitis

description: Abstract Introduction: High mobility group box 1 protein participates in the pathogenesis of allergic rhinitis. Activation of the inflammasome can mediate the release of high mobility group box 1. The role of the absent in melanoma 2 inflammasome in allergic rhinitis remains unclear. Objective: This study aimed to investigate the function of absent in melanoma 2 inflammasome in murine allergic rhinitis and the interaction between high mobility group box 1 and the absent in melanoma 2 inflammasome. Methods: A murine allergic rhinitis model was established using twenty Balb/c mice. Expression of the components of the absent in melanoma 2 inflammasome: absent in melanoma 2, apoptosis-associated speck-like protein containing a CARD (Asc), caspase-1 p20, and additional nod-like receptor family pyrin domain containing 3 (Nlrp3) were detected by western blotting during allergic rhinitis. Alterations of absent in melanoma 2, caspase-1, and high mobility group box 1 after ovalbumin challenge were demonstrated by immunohistochemistry. TdT-mediated dUTP Nick end labeling, TUNEL assay, and cleavage of caspase-3 and PARP-1 were used for the observation of pyroptosis. Results: Eosinophilia and goblet cell infiltration were observed in the nasal mucosa of mice in the allergic rhinitis group. Absent in melanoma 2, Asc, and caspase-1 p20 increased after ovalbumin exposure while Nlrp3 did not. High mobility group box 1 was released in the nasal mucosa of allergic rhinitis mice. TUNEL-positive cells increased in the epithelium and laminae propria, whereas cleavage of caspase-3 and PARP-1 was not observed. Conclusions: The absent in melanoma 2 inflammasome was activated and pyroptosis may occur in the nasal mucosa after ovalbumin treatment. These may contribute to the translocation of high mobility group box 1 and the development of allergic rhinitis.
DOI: 10.6084/m9.figshare.16960508
title: Additional file 12 of Transcriptome-wide N6-methyladenosine (m6A) methylation in watermelon under CGMMV infection

description: Additional file 12: Supplementary file 12. The differentially m6A methylated and expressed genes (DMEGs) identified in this study.
DOI: 10.6084/m9.figshare.16960501.v1
title: Additional file 1 of Dimethyl itaconate alleviates the pyroptosis of macrophages through oxidative stress

description: Additional file 1: The ARRIVE Guidelines Checklist.