cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0190856.10fu
title: SH0190856.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0190857.10fu
title: SH0190857.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0190858.10fu
title: SH0190858.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0190859.10fu
title: SH0190859.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.vd3qvm
title: Occurrence Download

description: A dataset containing 21789 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Year 2025-2025"
 ]
}

 The dataset includes 21789 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019536-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26712740
title: Additional file 2 of Genome-wide QTL and eQTL mapping reveal genes associated with growth rate trait of the Pacific white shrimp (Litopenaeus vannamei)

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26712743
title: Additional file 3 of Genome-wide QTL and eQTL mapping reveal genes associated with growth rate trait of the Pacific white shrimp (Litopenaeus vannamei)

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26712743.v1
title: Additional file 3 of Genome-wide QTL and eQTL mapping reveal genes associated with growth rate trait of the Pacific white shrimp (Litopenaeus vannamei)

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26712746
title: Additional file 4 of Genome-wide QTL and eQTL mapping reveal genes associated with growth rate trait of the Pacific white shrimp (Litopenaeus vannamei)

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.26712746.v1
title: Additional file 4 of Genome-wide QTL and eQTL mapping reveal genes associated with growth rate trait of the Pacific white shrimp (Litopenaeus vannamei)

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.26712749
title: Additional file 5 of Genome-wide QTL and eQTL mapping reveal genes associated with growth rate trait of the Pacific white shrimp (Litopenaeus vannamei)

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.26712749.v1
title: Additional file 5 of Genome-wide QTL and eQTL mapping reveal genes associated with growth rate trait of the Pacific white shrimp (Litopenaeus vannamei)

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.26712752
title: Additional file 6 of Genome-wide QTL and eQTL mapping reveal genes associated with growth rate trait of the Pacific white shrimp (Litopenaeus vannamei)

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.26712755.v1
title: Additional file 7 of Genome-wide QTL and eQTL mapping reveal genes associated with growth rate trait of the Pacific white shrimp (Litopenaeus vannamei)

description: Supplementary Material 7
DOI: 10.6084/m9.figshare.26712752.v1
title: Additional file 6 of Genome-wide QTL and eQTL mapping reveal genes associated with growth rate trait of the Pacific white shrimp (Litopenaeus vannamei)

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.26712755
title: Additional file 7 of Genome-wide QTL and eQTL mapping reveal genes associated with growth rate trait of the Pacific white shrimp (Litopenaeus vannamei)

description: Supplementary Material 7
DOI: 10.6084/m9.figshare.25706085
title: Additional file 1 of Genome‑wide identification and expression analysis of the UBC gene family in wheat (Triticum aestivum L.)

description: Additional file 1: Figure S1. Phylogenetic relationships, gene structure and conserved motifs of TaUBC genes in wheat. A: The different color blocks indicated different subclasses of the TaUBC genes family. B: The distribution of conserved motifs constructed by the MEME. Boxes with different colors represent different conserved motifs (Motif 1–10) C: Structure of TaUBC genes, with blue boxes representing UTRs, yellow boxes representing exons, and black lines representing introns. Figure S2. Conserved domains of TaUBCs in wheat. Figure S3. Collinearity and chromosome localization analysis of TaUBCs. A: Collinearity analysis of UBCs between wheat and Arabidopsis, rice, which were constructed by TBtools. The gray lines in the background indicate the orthologous genes of wheat and the other two species, while the blue lines highlight the collinear TaUBC gene pairs of wheat and the other two species. B: Distribution of TaUBC genes on chromosomes. Figure S4. Expression heatmap of TaUBC genes under different abiotic stress in Chinese spring. The heatmap shows the phylogenetic clustering of 93 TaUBC genes. Color scale: Blue represents low expression and red represents high expression levels. Figure S5. Analysis of cis-elements in the promoter of TaUBC genes. Figure S6. qRT-PCR analysis of selected TaUBCs under 200 mM NaCl, 20% PEG6000, and 100 uM ABA stress. A: Relative expression patterns of TaUBCs in leaves after 200 mM NaCl treatment. B: Relative expression patterns of TaUBCs in leaves after 20% PEG6000 treatment. C: Relative expression patterns of TaUBCs in leaves after treatment with 100 uM ABA. Relative expression values in the control sample (CK 0h) were normalized to 1. TaAct was used as a reference gene. Each bar value is the average value ± standard deviation based on three biological replicates. The different letters denote a significant difference between means (P &lt; 0.05). Table S1. Characteristics of TaUBC genes family members. Table S2. Information on duplication events of TaUBC genes. Table S3. Analysis of cis-elements in the promoter of TaUBC genes. Table S4. Primer sequences used in this study. Table S5. Variation sites and genotypes of TaUBC25 gene in 681 wheat materials. Table S6. Association analysis of TKW, KL, KW and KT between two haplotypes of TaUBC25 gene. Table S7. Wheat diversity panel information and distribution ofTaUBC25 alleles among genotypes. Table S8. Information on genotypes containing the TaUBC25 gene in the wheat diversity panel over decades. Table S9. The results of the amplification efficiency of each pair of primers. Table S10 and Table S11. The details on relative expression calculation and statistical methods for result significance.
DOI: 10.6084/m9.figshare.25706085.v1
title: Additional file 1 of Genome‑wide identification and expression analysis of the UBC gene family in wheat (Triticum aestivum L.)

description: Additional file 1: Figure S1. Phylogenetic relationships, gene structure and conserved motifs of TaUBC genes in wheat. A: The different color blocks indicated different subclasses of the TaUBC genes family. B: The distribution of conserved motifs constructed by the MEME. Boxes with different colors represent different conserved motifs (Motif 1–10) C: Structure of TaUBC genes, with blue boxes representing UTRs, yellow boxes representing exons, and black lines representing introns. Figure S2. Conserved domains of TaUBCs in wheat. Figure S3. Collinearity and chromosome localization analysis of TaUBCs. A: Collinearity analysis of UBCs between wheat and Arabidopsis, rice, which were constructed by TBtools. The gray lines in the background indicate the orthologous genes of wheat and the other two species, while the blue lines highlight the collinear TaUBC gene pairs of wheat and the other two species. B: Distribution of TaUBC genes on chromosomes. Figure S4. Expression heatmap of TaUBC genes under different abiotic stress in Chinese spring. The heatmap shows the phylogenetic clustering of 93 TaUBC genes. Color scale: Blue represents low expression and red represents high expression levels. Figure S5. Analysis of cis-elements in the promoter of TaUBC genes. Figure S6. qRT-PCR analysis of selected TaUBCs under 200 mM NaCl, 20% PEG6000, and 100 uM ABA stress. A: Relative expression patterns of TaUBCs in leaves after 200 mM NaCl treatment. B: Relative expression patterns of TaUBCs in leaves after 20% PEG6000 treatment. C: Relative expression patterns of TaUBCs in leaves after treatment with 100 uM ABA. Relative expression values in the control sample (CK 0h) were normalized to 1. TaAct was used as a reference gene. Each bar value is the average value ± standard deviation based on three biological replicates. The different letters denote a significant difference between means (P &lt; 0.05). Table S1. Characteristics of TaUBC genes family members. Table S2. Information on duplication events of TaUBC genes. Table S3. Analysis of cis-elements in the promoter of TaUBC genes. Table S4. Primer sequences used in this study. Table S5. Variation sites and genotypes of TaUBC25 gene in 681 wheat materials. Table S6. Association analysis of TKW, KL, KW and KT between two haplotypes of TaUBC25 gene. Table S7. Wheat diversity panel information and distribution ofTaUBC25 alleles among genotypes. Table S8. Information on genotypes containing the TaUBC25 gene in the wheat diversity panel over decades. Table S9. The results of the amplification efficiency of each pair of primers. Table S10 and Table S11. The details on relative expression calculation and statistical methods for result significance.
DOI: 10.5281/zenodo.10569084
title: Rapid phagosome isolation enables unbiased multiomic analysis of human microglia phagosomes 1

description: Proteomic data of patient microglia phagosomes and controls
DOI: 10.5281/zenodo.10569083
title: Rapid phagosome isolation enables unbiased multiomic analysis of human microglia phagosomes 1

description: Proteomic data of patient microglia phagosomes and controls
DOI: 10.6084/m9.figshare.26712785
title: Additional file 2 of Discovery of gene regulation mechanisms associated with uniconazole-induced cold tolerance in banana using integrated transcriptome and metabolome analysis

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26712785.v1
title: Additional file 2 of Discovery of gene regulation mechanisms associated with uniconazole-induced cold tolerance in banana using integrated transcriptome and metabolome analysis

description: Supplementary Material 2
DOI: 10.15468/dl.x93sqg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.906248 -32.982336, 148.906248 -32.991319, 148.917477 -32.991319, 148.917477 -32.986828, 148.912985 -32.986828, 148.912985 -32.982336, 148.906248 -32.982336))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068024-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26712803
title: Additional file 1 of Transcriptome profiles reveal response mechanisms and key role of PsNAC1 in Pinus sylvestris var. mongolica to drought stress

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.26712803.v1
title: Additional file 1 of Transcriptome profiles reveal response mechanisms and key role of PsNAC1 in Pinus sylvestris var. mongolica to drought stress

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.26712806
title: Additional file 2 of Transcriptome profiles reveal response mechanisms and key role of PsNAC1 in Pinus sylvestris var. mongolica to drought stress

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.26712806.v1
title: Additional file 2 of Transcriptome profiles reveal response mechanisms and key role of PsNAC1 in Pinus sylvestris var. mongolica to drought stress

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.26712809.v1
title: Additional file 3 of Transcriptome profiles reveal response mechanisms and key role of PsNAC1 in Pinus sylvestris var. mongolica to drought stress

description: Supplementary Material 3.
DOI: 10.6084/m9.figshare.26712809
title: Additional file 3 of Transcriptome profiles reveal response mechanisms and key role of PsNAC1 in Pinus sylvestris var. mongolica to drought stress

description: Supplementary Material 3.
DOI: 10.6084/m9.figshare.26712812
title: Additional file 4 of Transcriptome profiles reveal response mechanisms and key role of PsNAC1 in Pinus sylvestris var. mongolica to drought stress

description: Supplementary Material 4.
DOI: 10.6084/m9.figshare.26712812.v1
title: Additional file 4 of Transcriptome profiles reveal response mechanisms and key role of PsNAC1 in Pinus sylvestris var. mongolica to drought stress

description: Supplementary Material 4.
DOI: 10.6084/m9.figshare.26712815.v1
title: Additional file 2 of NextDenovo: an efficient error correction and accurate assembly tool for noisy long reads

description: Additional file 2: Table S10. Duplicate gene annotation across 35 human assemblies.
DOI: 10.6084/m9.figshare.26712815
title: Additional file 2 of NextDenovo: an efficient error correction and accurate assembly tool for noisy long reads

description: Additional file 2: Table S10. Duplicate gene annotation across 35 human assemblies.
DOI: 10.6084/m9.figshare.26712827
title: Additional file 3 of Optimal surgical management of unifocal vs. multifocal NF-PNETs: a respective cohort study

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26712827.v1
title: Additional file 3 of Optimal surgical management of unifocal vs. multifocal NF-PNETs: a respective cohort study

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26618620
title: Additional file 5 of Expression of miR-138 in cryopreserved bovine sperm is related to their fertility potential

description: Additional file 5. Gene Ontology (GO) analysis of the miRNAs-targets for bta-miR-138, bta-miR-7, bta-miR-19b and bta-miR-26a. Analyses were conducted with PANTHER 17.0 ( http://pantherdb.org/ ) using Fisher’s exact test and False Discovery Rate (FDR) correction.
DOI: 10.5281/zenodo.10569926
title: Rapid phagosome isolation enables unbiased multiomic analysis of human microglia phagosomes 3

description: Metabolomic data from phagosomes, controls and whole cell fractions of human iPSC-derived microglia in monoculture.
DOI: 10.5281/zenodo.10569927
title: Rapid phagosome isolation enables unbiased multiomic analysis of human microglia phagosomes 3

description: Metabolomic data from phagosomes, controls and whole cell fractions of human iPSC-derived microglia in monoculture.
DOI: 10.6084/m9.figshare.26712857
title: Additional file 2 of Polygenic scores for longitudinal prediction of incident type 2 diabetes in an ancestrally and medically diverse primary care physician network: a patient cohort study

description: Additional file 2: Supplementary Tables. Excel file containing all six supplemental tables. (1) - Administrative and ICD code based algorithms. (2) - Patient characteristics of the Mass General Hospital PCP network and the Mass General Brigham Biobank. (3) - Association of T2D polygenic scores as a continuous variable with incident T2D. (4) - Association of T2D polygenic scores as a categorical variable (top 10% vs IQR and top 2% vs IQR) with incident T2D. (5) - Association of T2D polygenic scores with incident T2D stratified by clinical risk factors. (6) - Association of polygenic scores with incident coronary artery disease and chronic kidney disease.
DOI: 10.6084/m9.figshare.26712857.v1
title: Additional file 2 of Polygenic scores for longitudinal prediction of incident type 2 diabetes in an ancestrally and medically diverse primary care physician network: a patient cohort study

description: Additional file 2: Supplementary Tables. Excel file containing all six supplemental tables. (1) - Administrative and ICD code based algorithms. (2) - Patient characteristics of the Mass General Hospital PCP network and the Mass General Brigham Biobank. (3) - Association of T2D polygenic scores as a continuous variable with incident T2D. (4) - Association of T2D polygenic scores as a categorical variable (top 10% vs IQR and top 2% vs IQR) with incident T2D. (5) - Association of T2D polygenic scores with incident T2D stratified by clinical risk factors. (6) - Association of polygenic scores with incident coronary artery disease and chronic kidney disease.
DOI: 10.6084/m9.figshare.26618620.v1
title: Additional file 5 of Expression of miR-138 in cryopreserved bovine sperm is related to their fertility potential

description: Additional file 5. Gene Ontology (GO) analysis of the miRNAs-targets for bta-miR-138, bta-miR-7, bta-miR-19b and bta-miR-26a. Analyses were conducted with PANTHER 17.0 ( http://pantherdb.org/ ) using Fisher’s exact test and False Discovery Rate (FDR) correction.
DOI: 10.6084/m9.figshare.26618617.v1
title: Additional file 4 of Expression of miR-138 in cryopreserved bovine sperm is related to their fertility potential

description: Additional file 4. Target transcripts of the miRNAs candidates associated to fertility potential (bta-miR-138) or sperm function (bta-miR-7, bta-miR-19b, and bta-miR-26a). Information was extracted from TargetScan website (last accession 13/04/2023): https://www.targetscan.org/vert_71/ .
DOI: 10.6084/m9.figshare.26618617
title: Additional file 4 of Expression of miR-138 in cryopreserved bovine sperm is related to their fertility potential

description: Additional file 4. Target transcripts of the miRNAs candidates associated to fertility potential (bta-miR-138) or sperm function (bta-miR-7, bta-miR-19b, and bta-miR-26a). Information was extracted from TargetScan website (last accession 13/04/2023): https://www.targetscan.org/vert_71/ .
DOI: 10.5281/zenodo.15168428
title: Catches of Atlantic cod in Icelandic waters in the 5a area 1905-2019

description: Table showing Atlantic cod catches within ICES area Va (27.5.a, Iceland Grounds) between 1905 and 1992. Catch data is presented in tons. The data presented include catches by the Icelandic fleet, catches by other countries' fleet in Icelandic waters and the grand total. Data was filtered from the database of the Icelandic Directorate of Fisheries (https://statice.is/statistics/business-sectors/fisheries/) on 3/20/2024.
DOI: 10.5281/zenodo.15168429
title: Catches of Atlantic cod in Icelandic waters in the 5a area 1905-2019

description: Table showing Atlantic cod catches within ICES area Va (27.5.a, Iceland Grounds) between 1905 and 1992. Catch data is presented in tons. The data presented include catches by the Icelandic fleet, catches by other countries' fleet in Icelandic waters and the grand total. Data was filtered from the database of the Icelandic Directorate of Fisheries (https://statice.is/statistics/business-sectors/fisheries/) on 3/20/2024.
DOI: 10.15468/dl.ma66u2
title: Occurrence Download

description: A dataset containing 19672 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lespedeza cuneata (Dum.Cours.) G.Don)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 19672 records from 217 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008705-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h2uqdu
title: Occurrence Download

description: A dataset containing 229 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Drypetes arguta (Müll.Arg.) Hutch."
 ]
}

 The dataset includes 229 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036750-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.