cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.wtfbx8
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Allium rotundum",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 37 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042895-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9t7f29
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Allium rotundum",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 16 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042896-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26023/90f8-011x-re10
title: TRANS2AM: King Air QC-TILDAS Gas Phase C2H6 2021 Phase Data. Version 1.0

description: QC-TILDAS gas-phase ethane (C2H6) measurements collected aboard the University of Wyoming King Air aircraft during Phase 1 (July and August 2021) of the TRANS2AM campaign. The base of operations was the Laramie Airport (KLAR) in Laramie, Wyoming with most flights over northeastern Colorado.
DOI: 10.6084/m9.figshare.30271885
title: <b>Update of the octoploid strawberry genome annotation and gene regulatory network analysis revealed key factors in strawberry fruit maturation</b>

description: The existing genome annotations for strawberry cultivar 'Benihoppe' contain incomplete or inaccurate gene models, particularly lacking different isoforms and incomplete untranslated regions, which impedes precise transcriptomic analysis. Here, we report a substantially improved genome annotation for 'Benihoppe' (FxaBHv1.0.a2) generated by integrating an extensive collection of 257 short-read and 33 long-read (PacBio and Nanopore) RNA-seq datasets spanning diverse tissues, developmental stages, and stress conditions. The updated annotation demonstrates a remarkable increase in quality, with the BUSCO completeness score rising from 96.2% to 99.5% and fragmented BUSCOs being eliminated. Notably, the annotation of UTRs was significantly enhanced, with 89% of genes now featuring these crucial regulatory regions. Comprehensive functional information was assigned to 90% of the 103,316 predicted genes desides 6,167 ncRNA. Leveraging this high-fidelity resource, we conducted an in-depth analysis of the transcriptional regulatory network governing fruit development and ripening. Using an integrative approach that combined Mfuzz clustering, Weighted Gene Co-expression Network Analysis (WGCNA), and GENIE3 causal network inference, we identified and prioritized key regulators. Our results pinpoint several high-confidence candidate master regulators, including known factors like MYB1 (a MYB10 homolog) and novel hubs such as STOP1 and NBCL. These transcription factors are predicted to orchestrate the critical hormonal transition from auxin repression to abscisic acid (ABA)-driven maturation by targeting core components of their respective signaling pathways. This work not only provides a foundational genomic tool for the strawberry research community but also delivers novel insights into the regulatory architecture of fruit ripening, identifying high-priority targets for future functional validation and crop improvement.
DOI: 10.6084/m9.figshare.30271885.v1
title: <b>Update of the octoploid strawberry genome annotation and gene regulatory network analysis revealed key factors in strawberry fruit maturation</b>

description: The existing genome annotations for strawberry cultivar 'Benihoppe' contain incomplete or inaccurate gene models, particularly lacking different isoforms and incomplete untranslated regions, which impedes precise transcriptomic analysis. Here, we report a substantially improved genome annotation for 'Benihoppe' (FxaBHv1.0.a2) generated by integrating an extensive collection of 257 short-read and 33 long-read (PacBio and Nanopore) RNA-seq datasets spanning diverse tissues, developmental stages, and stress conditions. The updated annotation demonstrates a remarkable increase in quality, with the BUSCO completeness score rising from 96.2% to 99.5% and fragmented BUSCOs being eliminated. Notably, the annotation of UTRs was significantly enhanced, with 89% of genes now featuring these crucial regulatory regions. Comprehensive functional information was assigned to 90% of the 103,316 predicted genes desides 6,167 ncRNA. Leveraging this high-fidelity resource, we conducted an in-depth analysis of the transcriptional regulatory network governing fruit development and ripening. Using an integrative approach that combined Mfuzz clustering, Weighted Gene Co-expression Network Analysis (WGCNA), and GENIE3 causal network inference, we identified and prioritized key regulators. Our results pinpoint several high-confidence candidate master regulators, including known factors like MYB1 (a MYB10 homolog) and novel hubs such as STOP1 and NBCL. These transcription factors are predicted to orchestrate the critical hormonal transition from auxin repression to abscisic acid (ABA)-driven maturation by targeting core components of their respective signaling pathways. This work not only provides a foundational genomic tool for the strawberry research community but also delivers novel insights into the regulatory architecture of fruit ripening, identifying high-priority targets for future functional validation and crop improvement.
DOI: 10.5281/zenodo.16947850
title: Experimental data for the manuscript titled Continuous time crystal coupled to a mechanical mode as a cavity-optomechanics-like platform

description: This submission contains the minimal dataset required to reproduce the experimental findings related to the manuscript titled Continuous time crystal coupled to a mechanical mode as a cavity-optomechanics-like platform, associated with the DOI 10.1038/s41467-025-64673-8
DOI: 10.5281/zenodo.16947851
title: Experimental data for the manuscript titled Continuous time crystal coupled to a mechanical mode as a cavity-optomechanics-like platform

description: This submission contains the minimal dataset required to reproduce the experimental findings related to the manuscript titled Continuous time crystal coupled to a mechanical mode as a cavity-optomechanics-like platform, associated with the DOI 10.1038/s41467-025-64673-8
DOI: 10.26023/8emt-47x7-vv00
title: TRANS2AM: King Air Picarro G2401-M 2021 Phase Data. Version 2.0

description: Picarro G2401-m Cavity Ring Down Spectrometer gas-phase CO2, CH4, CO, and H2O dry air measurements collected aboard the University of Wyoming King Air aircraft during Phase 1 (July and August 2021) of the TRANS2AM campaign. The base of operations was the Laramie Airport (KLAR) in Laramie, Wyoming with most flights over northeastern Colorado.
DOI: 10.48804/3si2pr
title: Replication Data for: Stretching the Limits: From Planar Biaxial Stress-Strain to Arterial Pressure-Diameter

description: This dataset is the supplementary materials for the research paper entitled "Stretching the Limits: From Planar Biaxial Stress-Strain to Arterial Pressure-Diameter". 
Authors:
Thibault Vervenne (KU Leuven), Nic Vermeeren (KU Leuven), Nele Demeersseman (KU Leuven), Heleen Fehervary (KU Leuven), Mathias Peirlinck (TU Delft), Ellen Kuhl (Stanford) and Nele Famaey (KU Leuven)
Affiliations:
Department of Mechanical Engineering, KU Leuven, Leuven, Belgium
FIBEr - KU Leuven Core Facility for Biomechanical Experimentation, Leuven, Belgium
Department of BioMechanical Engineering, TU Delft, Delft, The Netherlands
Department of Mechanical Engineering, Stanford University, Stanford, CA, United States
All data files and MATLAB/Python codes are included for:
- Preparation and processing of planar biaxial data (both modeled and experimental).
- Reproducing pressure-diameter results (modeled and experimental), including optimizations and extension-inflation data.
- Ring-opening experiments data.
- Constitutive Artificial Neural Network (CANN) code 
***Please consider the readme.txt first***
description: Python (Spyder), 3.8
description: Matlab, 2024
description: testXpert (ZwickRoell)
description: Gocator Emulator
DOI: 10.15468/dl.b25h5e
title: Occurrence Download

description: A dataset containing 37327 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dreissena polymorpha"
 ]
}

 The dataset includes 37327 records from 387 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042897-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cctkj3z
title: CCDC 761611: Experimental Crystal Structure Determination

description: Related Article: Xin-Dong Jiang, S.Matsukawa, Y.Fukuzaki, Y.Yamamoto|2010|New J.Chem.|34|1623|doi:10.1039/c0nj00035c
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctkj40
title: CCDC 761612: Experimental Crystal Structure Determination

description: Related Article: Xin-Dong Jiang, S.Matsukawa, Y.Fukuzaki, Y.Yamamoto|2010|New J.Chem.|34|1623|doi:10.1039/c0nj00035c
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctkj51
title: CCDC 761613: Experimental Crystal Structure Determination

description: Related Article: Xin-Dong Jiang, S.Matsukawa, Y.Fukuzaki, Y.Yamamoto|2010|New J.Chem.|34|1623|doi:10.1039/c0nj00035c
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctkj62
title: CCDC 761614: Experimental Crystal Structure Determination

description: Related Article: Xin-Dong Jiang, S.Matsukawa, Y.Fukuzaki, Y.Yamamoto|2010|New J.Chem.|34|1623|doi:10.1039/c0nj00035c
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctlq36
title: CCDC 762758: Experimental Crystal Structure Determination

description: Related Article: W.Uhl, M.Rohling, J.Kosters|2010|New J.Chem.|34|1630|doi:10.1039/c0nj00050g
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctlq47
title: CCDC 762759: Experimental Crystal Structure Determination

description: Related Article: W.Uhl, M.Rohling, J.Kosters|2010|New J.Chem.|34|1630|doi:10.1039/c0nj00050g
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctlq58
title: CCDC 762760: Experimental Crystal Structure Determination

description: Related Article: W.Uhl, M.Rohling, J.Kosters|2010|New J.Chem.|34|1630|doi:10.1039/c0nj00050g
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctlq69
title: CCDC 762761: Experimental Crystal Structure Determination

description: Related Article: W.Uhl, M.Rohling, J.Kosters|2010|New J.Chem.|34|1630|doi:10.1039/c0nj00050g
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctlq7b
title: CCDC 762762: Experimental Crystal Structure Determination

description: Related Article: W.Uhl, M.Rohling, J.Kosters|2010|New J.Chem.|34|1630|doi:10.1039/c0nj00050g
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctqh33
title: CCDC 766385: Experimental Crystal Structure Determination

description: Related Article: T.Iwamoto, N.Ohnishi, Zheny Gui, S.Ishida, H.Isobe, S.Maeda, K.Ohno, M.Kira|2010|New J.Chem.|34|1637|doi:10.1039/c0nj00121j
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctqh44
title: CCDC 766386: Experimental Crystal Structure Determination

description: Related Article: T.Iwamoto, N.Ohnishi, Zheny Gui, S.Ishida, H.Isobe, S.Maeda, K.Ohno, M.Kira|2010|New J.Chem.|34|1637|doi:10.1039/c0nj00121j
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctqh55
title: CCDC 766387: Experimental Crystal Structure Determination

description: Related Article: T.Iwamoto, N.Ohnishi, Zheny Gui, S.Ishida, H.Isobe, S.Maeda, K.Ohno, M.Kira|2010|New J.Chem.|34|1637|doi:10.1039/c0nj00121j
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctq9mf
title: CCDC 766215: Experimental Crystal Structure Determination

description: Related Article: C.R.Wade, A.A.Yakovenko, F.P.Gabbai|2010|New J.Chem.|34|1646|doi:10.1039/c0nj00128g
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctqh66
title: CCDC 766388: Experimental Crystal Structure Determination

description: Related Article: T.Iwamoto, N.Ohnishi, Zheny Gui, S.Ishida, H.Isobe, S.Maeda, K.Ohno, M.Kira|2010|New J.Chem.|34|1637|doi:10.1039/c0nj00121j
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctq9ng
title: CCDC 766216: Experimental Crystal Structure Determination

description: Related Article: C.R.Wade, A.A.Yakovenko, F.P.Gabbai|2010|New J.Chem.|34|1646|doi:10.1039/c0nj00128g
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctq0q7
title: CCDC 765939: Experimental Crystal Structure Determination

description: Related Article: C.Bresner, C.J.E.Haynes, D.A.Addy, A.E.J.Broomsgrove, P.Fitzpatrick, D.Vidovic, A.L.Thompson, I.A.Fallis, S.Aldridge|2010|New J.Chem.|34|1652|doi:10.1039/c0nj00120a
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctq9ph
title: CCDC 766217: Experimental Crystal Structure Determination

description: Related Article: C.R.Wade, A.A.Yakovenko, F.P.Gabbai|2010|New J.Chem.|34|1646|doi:10.1039/c0nj00128g
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctq0r8
title: CCDC 765940: Experimental Crystal Structure Determination

description: Related Article: C.Bresner, C.J.E.Haynes, D.A.Addy, A.E.J.Broomsgrove, P.Fitzpatrick, D.Vidovic, A.L.Thompson, I.A.Fallis, S.Aldridge|2010|New J.Chem.|34|1652|doi:10.1039/c0nj00120a
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccslx4d
title: CCDC 733154: Experimental Crystal Structure Determination

description: Related Article: S.Nayak, P.Gamez, B.Kozlevcar, A.Pevec, O.Roubeau, S.Dehnen, J.Reedijk|2010|Polyhedron|29|2291|doi:10.1016/j.poly.2010.04.035
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctq0s9
title: CCDC 765941: Experimental Crystal Structure Determination

description: Related Article: C.Bresner, C.J.E.Haynes, D.A.Addy, A.E.J.Broomsgrove, P.Fitzpatrick, D.Vidovic, A.L.Thompson, I.A.Fallis, S.Aldridge|2010|New J.Chem.|34|1652|doi:10.1039/c0nj00120a
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.17401894
title: Input and parameter files for SynthFirm - a national-scale firm synthesizer and supply chain simulator

description: This dataset contains input and parameter files to support SynthFirm implementations in multiple regions, including freight demand generation for the entire U.S., San Francisco Bay Area and Seattle, Washington Area. To access the tool, please visit this public repository and follow the user guide: https://github.com/LBNL-UCB-STI/SynthFirm/tree/main.
DOI: 10.5517/cctwkhq
title: CCDC 771264: Experimental Crystal Structure Determination

description: Related Article: S.Nayak, P.Gamez, B.Kozlevcar, A.Pevec, O.Roubeau, S.Dehnen, J.Reedijk|2010|Polyhedron|29|2291|doi:10.1016/j.poly.2010.04.035
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctwkjr
title: CCDC 771265: Experimental Crystal Structure Determination

description: Related Article: S.Nayak, P.Gamez, B.Kozlevcar, A.Pevec, O.Roubeau, S.Dehnen, J.Reedijk|2010|Polyhedron|29|2291|doi:10.1016/j.poly.2010.04.035
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctfd6t
title: CCDC 757646: Experimental Crystal Structure Determination

description: Related Article: A.Deally, J.Claffey, B.Gleeson, M.Hogan, H.Muller-Bunz, S.Patil, D.F.O'Shea, M.Tacke|2010|Polyhedron|29|2445|doi:10.1016/j.poly.2010.05.018
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccts84z
title: CCDC 768091: Experimental Crystal Structure Determination

description: Related Article: S.Besli, M.Durmus, H.Ibisoglu, A.Kilic, F.Yuksel|2010|Polyhedron|29|2609|doi:10.1016/j.poly.2010.06.010
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.