cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5508396
title: Rutford Ice Stream, Antarctica M_sf tidal velocity components derived from COSMO-SkyMED SAR data

description: This repository provides rasters for velocity components of a tidal (periodic) model for Rutford Ice Stream (RIS), Antarctica. The tidal model consists of a secular (constant) term and a single sinusoidal component corresponding to the M_sf tidal cycle (14.76529 days). The tidal model is fit to time-dependent velocity fields over RIS derived from speckle tracking of COSMO-SkyMed SAR data, collected over 9 months beginning in August 2013. The original methodology and source dataset are described in the publication: Minchew, B. M., Simons, M., Riel, B., & Milillo, P. (2017). Tidally induced variations in vertical and horizontal motion on Rutford Ice Stream, West Antarctica, inferred from remotely sensed observations. <em>Journal of Geophysical Research: Earth Surface</em>, <em>122</em>(1), 167-190. doi: 10.1002/2016JF003971 The rasters are provided in GeoTIFF format in the Polar Stereographic South (EPSG: 3031) coordinate system. The velocity components are also referenced to Polar Stereographic South coordinates. The pixel spacing is 400 meters (in both the X- and Y-directions). The individual files are: vx_secular.tif: secular velocity in X-direction in meters/day. vy_secular.tif: secular velocity in Y-direction in meters/day. vx_amp.tif: M_sf velocity amplitude in X-direction in meters/day. vy_amp.tif: M_sf velocity amplitude in Y-direction in meters/day. vx_phase.tif: M_sf velocity phase delay in X-direction in days. vy_phase.tif: M_sf velocity phase delay in Y-direction in days.
DOI: 10.5281/zenodo.5508310
title: Boesenbergia pandurata as Anti-breast Cancer: Molecular Docking and ADMET Study

description: <em>Boesenbergia pandurata</em> or fingerroot is known to have various pharmacological activities, including anticancer. Extracts from these plants are known to inhibit the growth of cancer cells, including breast cancer. Anti-breast cancer activity is significantly influenced by the inhibition of two receptors: ER-α and HER2. However, it is unknown which metabolites of <em>B. pandurata</em> play the most crucial role in their anticancer activity. This study aimed to determine the metabolites of <em>B. pandurata</em> with the best potential as ER-α and HER2 inhibitors. The method used was molecular docking of several <em>B. pandurata</em> metabolites against ER-α and HER2 receptors, followed by an ADMET study of several metabolites with the best docking results. The docking results showed eight metabolites with the best docking results for the two receptors based on the docking score and ligand-receptor interactions. Of these eight compounds, compounds <strong>11</strong> ((2S)-7,8-dihydro-5-hydroxy-2-methyl-2-(4''-methyl-3''-pentenyl)-8-phenyl-2H,6H-benzo(1,2-b-5,4-b')dipyran-6-one) and <strong>34</strong> (geranyl-2,4-dihydroxy-6-phenethylbenzoate) showed the potential to inhibit both receptors. Both ADMET profiles also show mixed results but still allow for further development. In conclusion, the metabolites of <em>B. pandurata</em> especially compounds <strong>11</strong> and <strong>34</strong>, can be developed as anti-breast cancer through the inhibition of ER-α and HER2.
DOI: 10.6084/m9.figshare.16621279
title: COSMIC DATA

description: COSMIC data near the Hong Kong regionduring the period of TC Hato in 2017
DOI: 10.5517/ccdc.csd.cc289wl2
title: CCDC 2094874: Experimental Crystal Structure Determination

description: Related Article: Mengna Zhao, Qian Miao|2021|Angew.Chem.,Int.Ed.|60|21289|doi:10.1002/anie.202109326
DOI: 10.5517/ccdc.csd.cc289wm3
title: CCDC 2094875: Experimental Crystal Structure Determination

description: Related Article: Mengna Zhao, Qian Miao|2021|Angew.Chem.,Int.Ed.|60|21289|doi:10.1002/anie.202109326
DOI: 10.5517/ccdc.csd.cc28c460
title: CCDC 2096071: Experimental Crystal Structure Determination

description: Related Article: Ryan J. Schwamm, Clara A. Randow, Ahmed Mouchfiq, Matthew J. Evans, Martyn P. Coles, J. Robin Fulton|2021|Eur.J.Inorg.Chem.|2021|3466|doi:10.1002/ejic.202100447
DOI: 10.5517/ccdc.csd.cc1zg4f0
title: CCDC 1830842: Experimental Crystal Structure Determination

description: Related Article: Di Jia, Lige Gong, Ying Li, Shu Cao, Weiming Zhao, Lijun Hao, Shasha Li, Bo Pang, Chunjing Zhang, Shuyan Li, Wei Zhang, Tianyi Chen, Limin Dong, Baibin Zhou, Dan Yang|2021|Angew.Chem.,Int.Ed.|60|21449|doi:10.1002/anie.202107265
DOI: 10.6084/m9.figshare.16621435
title: GNSS stations for 2D TEC map

description: Stations in Hong Kong, Phillippines, Taiwan, and Wuhan of China, for the 2D TEC MAP<br>
DOI: 10.6084/m9.figshare.16621435.v1
title: GNSS stations for 2D TEC map

description: Stations in Hong Kong, Phillippines, Taiwan, and Wuhan of China, for the 2D TEC MAP<br>
DOI: 10.5281/zenodo.5508575
title: Multimodal Trajectory Prediction via Topological Invariance for Navigation at Uncontrolled Intersections

description: A pre-trained model of the paper "Multimodal Trajectory Prediction via Topological Invariance for Navigation at Uncontrolled Intersections," CoRL 2020.
DOI: 10.5281/zenodo.5508574
title: Multimodal Trajectory Prediction via Topological Invariance for Navigation at Uncontrolled Intersections

description: A pre-trained model of the paper "Multimodal Trajectory Prediction via Topological Invariance for Navigation at Uncontrolled Intersections," CoRL 2020.
DOI: 10.5281/zenodo.5508633
title: Conditional Driving from Natural Language Instruction

description: A pre-trained model of the paper "Conditional Driving from Natural Language Instructions," CoRL 2019.
DOI: 10.5281/zenodo.5508632
title: Conditional Driving from Natural Language Instruction

description: A pre-trained model of the paper "Conditional Driving from Natural Language Instructions," CoRL 2019.
DOI: 10.5281/zenodo.5502475
title: Russian Index of the Research Organizations (RIRO)

description: The RIRO dataset contains standardized official information, geodata, and various identifiers of research organizations in Russia, all interlinked via unified primary key. Currently covered data sources include ROR\GRID, WIkiData, Scopus\Scival IDs, InCites\Web of Science\eLIBRARY names, and the IDs assigned by the Russian Ministry of Science & Higher Education. RIRO lists not only the head organizations, but also their branches and last predecessors, which allows to build an hierarchy and analyze a history of mergers\liquidations using the linked IDs. RIRO is aimed to become a valuable tool for both research managers and academic scholars in the fields of science policy, scientometrics, science and technology studies. www: RIRO Project site
DOI: 10.5281/zenodo.4775290
title: Russian Index of the Research Organizations (RIRO)

description: The RIRO dataset contains standardized official information, geodata, and various identifiers of research organizations in Russia, all interlinked via unified primary key. Currently covered data sources include ROR\GRID, WIkiData, Scopus\Scival IDs, InCites\Web of Science\eLIBRARY names, and the IDs assigned by the Russian Ministry of Science & Higher Education. RIRO lists not only the head organizations, but also their branches and last predecessors, which allows to build an hierarchy and analyze a history of mergers\liquidations using the linked IDs. RIRO is aimed to become a valuable tool for both research managers and academic scholars in the fields of science policy, scientometrics, science and technology studies. www: RIRO Project site
DOI: 10.6084/m9.figshare.15180386
title: A Systematic Review of Radiation-Related Lymphopenia in Genito-urinary Malignancies

description: The impact of radiation-related lymphopenia on clinical outcomes has been reported in various solid malignancies such as high grade gliomas, head and neck cancers, thoracic malignancies and gastro-intestinal malignancies but its impact is not clearly known in the context of common genito-urinary (GU) malignancies. To better understand the effect of radiation-associated lymphopenia in prostate and bladder cancer, we undertook this systematic review of clinical studies that have studied radiation-related lymphopenia in GU malignancies. A systematic methodology search of PubMed, Embase, and Cochrane library resulted in 2125 abstracts. Ten studies fulfilled the inclusion criteria which included any prospective, retrospective study or cohort study of prostate, urinary bladder, kidney, ureter, urethra, penile cancer in humans, and radiation should be part of treatment and intent has to be in definitive or adjuvant settings. Finally the study should have data on radiation-related lymphopenia. Four studies reported on the cancer-specific outcomes related to the lymphopenia. The incidence of low lymphocyte counts were documented in all the studies. Three studies analyzed the factors associated with the Lymphocyte depletion. Pooled incidence of severe lymphopenia was 29.25% and mild to moderate lymphopenia was 60.75%. Bone marrow volume receiving 40 Gy was associated with the incidence of lymphopenia. One-third of the patients suffer from severe lymphopenia after radiation in prostate and bladder cancer. There are no clear data to support the correlation between severe lymphopenia and disease outcomes. Bone marrow dosimetry can affect the incidence and severity of lymphopenia. There is need of prospective datasets to identify the impact of radiation-related lymphopenia in GU malignancies focusing on long-term side effects, recurrence rates, and overall survival.
DOI: 10.6084/m9.figshare.15180386.v1
title: A Systematic Review of Radiation-Related Lymphopenia in Genito-urinary Malignancies

description: The impact of radiation-related lymphopenia on clinical outcomes has been reported in various solid malignancies such as high grade gliomas, head and neck cancers, thoracic malignancies and gastro-intestinal malignancies but its impact is not clearly known in the context of common genito-urinary (GU) malignancies. To better understand the effect of radiation-associated lymphopenia in prostate and bladder cancer, we undertook this systematic review of clinical studies that have studied radiation-related lymphopenia in GU malignancies. A systematic methodology search of PubMed, Embase, and Cochrane library resulted in 2125 abstracts. Ten studies fulfilled the inclusion criteria which included any prospective, retrospective study or cohort study of prostate, urinary bladder, kidney, ureter, urethra, penile cancer in humans, and radiation should be part of treatment and intent has to be in definitive or adjuvant settings. Finally the study should have data on radiation-related lymphopenia. Four studies reported on the cancer-specific outcomes related to the lymphopenia. The incidence of low lymphocyte counts were documented in all the studies. Three studies analyzed the factors associated with the Lymphocyte depletion. Pooled incidence of severe lymphopenia was 29.25% and mild to moderate lymphopenia was 60.75%. Bone marrow volume receiving 40 Gy was associated with the incidence of lymphopenia. One-third of the patients suffer from severe lymphopenia after radiation in prostate and bladder cancer. There are no clear data to support the correlation between severe lymphopenia and disease outcomes. Bone marrow dosimetry can affect the incidence and severity of lymphopenia. There is need of prospective datasets to identify the impact of radiation-related lymphopenia in GU malignancies focusing on long-term side effects, recurrence rates, and overall survival.
DOI: 10.6084/m9.figshare.13312586.v1
title: DNA hypermethylation/boundary control loss identified in retinoblastomas associated with genetic and epigenetic inactivation of the <i>RB1</i> gene promoter.

description: DNA hypermethylation events occur frequently in human cancers, but less is known of the mechanisms leading to their initiation. Retinoblastoma, an intraocular cancer affecting young children, involves bi-allelic inactivation of the <i>RB1</i> gene (<i>RB<sup>−/-</sup></i>). <i>RB1</i> encodes a tumour suppressing, cell cycle regulating transcription factor (<i>pRB)</i> that binds and regulates the <i>RB1</i> core and other <i>E2F</i> responsive promoters with epigenetic functions that include recruitment of histone deacetylases (<i>HDACs</i>). Evidence suggests that bi-allelic epigenetic inactivation/hypermethylation of the <i>RB1</i> core promoter (<i>Pr<sup>E-/E-</sup></i>), is specific to sporadic retinoblastomas (frequency~10%), whereas heritable <i>RB1</i> promoter variants (<i>Pr<sup>−/+</sup></i>, frequency~1-2%) are not associated with known epigenetic phenomena. We report heritable <i>Pr<sup>−/-</sup></i> retinoblastomas with the expected loss of <i>pRB</i> expression, in which hypermethylation consistent with distal boundary displacement (BD) relative to normal peripheral blood DNAs was detected in 4/4 cases. In contrast, proximal <i>BD</i> was identified in <i>16/16 RB<sup>−/-</sup></i> retinoblastomas while multiple boundaries distal of the core promoter was further identified in <i>Pr<sup>E-/E-</sup></i>and <i>Pr<sup>E-/E+</sup></i> retinoblastomas. However, weak or no DNA hypermethylation/<i>BD</i> in peripheral blood DNA was detected in 8/9 <i>Pr<sup>−/+</sup></i> patients, with the exception, a carrier of a microdeletion encompassing several <i>RB1</i> promoter elements. These findings suggest that loss of boundary control may be a critical step leading to epigenetic inactivation of the <i>RB1</i> gene and that novel DNA methylation boundaries/profiles identified in the <i>RB1</i> promoter of <i>Pr<sup>−/-</sup></i> retinoblastomas, may be the result of epigenetic phenomena associated with epimutation in conjunction with loss of <i>pRB</i> expression/binding and/or <i>RB1</i> promoter interactions with boundary control elements.
DOI: 10.6084/m9.figshare.13089479.v1
title: Sources of variation of DNA methylation in rainbow trout: combined effects of temperature and genetic background

description: Phenotypic plasticity is a key component of the ability of organisms to respond to changing environmental conditions. In this study, we aimed to study the establishment of DNA methylation marks in response to an environmental stress in rainbow trout and to assess whether these marks depend on the genetic background. The environmental stress chosen here was temperature, a known induction factor of epigenetic marks in fish. To disentangle the role of epigenetic mechanisms such as DNA methylation in generating phenotypic variations, nine rainbow trout isogenic lines with no genetic variability within a line were used. For each line, half of the eggs were incubated at standard temperature (11°C) and the other half at high temperature (16°C), from eyed-stage to hatching. In order to gain a first insight into the establishment of DNA methylation marks in response to an early temperature regime (control 11°C vs. heated 16°C), we have studied the expression of 8 <i>dnmt3</i> (DNA methyltransferase) genes, potentially involved in <i>de novo</i> methylation, and analysed global DNA methylation in the different rainbow trout isogenic lines using LUMA (LUminometric Methylation Assay). Finally, finer investigation of genome-wide methylation patterns was performed using EpiRADseq, a reduced-representation library approach based on the ddRADseq (Double Digest Restriction Associated DNA) protocol, for six rainbow trout isogenic lines. We have demonstrated that thermal history during embryonic development alters patterns of DNA methylation, but to a greater or lesser extent depending on the genetic background.
DOI: 10.6084/m9.figshare.16621474
title: Supplementary Material for: Passive Tracer Visualization to Simulate Aerodynamic Virus Transport in Noninvasive Respiratory Support Methods

description: <b><i>Background:</i></b> Various forms of noninvasive respiratory support methods are used in the treatment of hypoxemic CO­VID-19 patients, but limited data are available about the corresponding respiratory droplet dispersion. <b><i>Objectives:</i></b> The aim of this study was to estimate the potential spread of infectious diseases for a broad selection of oxygen and respiratory support methods by revealing the therapy-induced aerodynamics and respiratory droplet dispersion. <b><i>Methods:</i></b> The exhaled air-smoke plume from a 3D-printed upper airway geometry was visualized by recording light reflection during simulated spontaneous breathing, standard oxygen mask application, nasal high-flow therapy (NHFT), continuous positive airway pressure (CPAP), and bilevel positive airway pressure (BiPAP). The dispersion of 100 μm particles was estimated from the initial velocity of exhaled air and the theoretical terminal velocity. <b><i>Results:</i></b> Estimated droplet dispersion was 16 cm for unassisted breathing, 10 cm for Venturi masks, 13 cm for the nebulizer, and 14 cm for the nonrebreathing mask. Estimated droplet spread increased up to 34 cm in NHFT, 57 cm in BiPAP, and 69 cm in CPAP. A nonsurgical face mask over the NHFT interface reduced estimated droplet dispersion. <b><i>Conclusions:</i></b> During NHFT and CPAP/BiPAP with vented masks, extensive jets with relatively high jet velocities were observed, indicating increased droplet spread and an increased risk of droplet-driven virus transmission. For the Venturi masks, a nonrebreathing mask, and a nebulizer, estimated jet velocities are comparable to unassisted breathing. Aerosols are transported unboundedly in all these unfiltered therapies. The adequate use of protective measures is of vital importance when using noninvasive unfiltered therapies in infectious respiratory diseases.
DOI: 10.6084/m9.figshare.13586183
title: Supplementary Tables from A discordance of seasonally covarying cues uncovers misregulated phenotypes in the heterophyllous pitcher plant <i>Cephalotus follicularis</i>

description: Table S1-S3
DOI: 10.6084/m9.figshare.13586183.v1
title: Supplementary Tables from A discordance of seasonally covarying cues uncovers misregulated phenotypes in the heterophyllous pitcher plant <i>Cephalotus follicularis</i>

description: Table S1-S3
DOI: 10.6084/m9.figshare.16620349
title: Host factors affect gut microbiome more significantly than diet shift

description: we compared the effect of diet shift (DS) from heavily relying on meatatarian diets to vegetarian diets and physical exercise (EX) on the composition of the gut microbiome after 3 months.<br>We deposited the gut microbiome data used for the analysis of each group.<br><br>
DOI: 10.3886/e142821v1-96280
title: Testing Basic Assumptions Reveals When (Not) to Expect Mindset and Belonging Interventions to Succeed

description: In this case study, we investigated the effectiveness of growth mindset and social belonging interventions in a college setting with large numbers of traditionally underrepresented groups (n = 1,091). In doing so, we highlight the characteristics of the students in our study that are important for determining whether we should expect such interventions to be effective for diverse higher education populations. Correlational analyses revealed no evidence that growth mindset or social belonging were barriers to academic success among targeted subgroups in our sample. Additionally, we found no evidence that underrepresented minority, first-generation, or low-income students substantially endorsed fixed mindset or belonging uncertainty measures at baseline. We discuss benefits of testing basic assumptions for interpreting null results, including choosing the most appropriate interventions, accurately identifying subgroups who face psychological barriers to academic success, and establishing “redundancy thresholds” at which messages do not need to be reinforced by interventions.
DOI: 10.3886/e145581v1-96281
title: Effectiveness of a telephone-based nursing intervention to reduce hospital utilization by COVID-19 patients

description: With the surge of COVID-19 cases in the United States in the early months of the pandemic, the availability of hospital resources became a concern. To reduce the strain on health systems, it is important to decrease the number of COVID-19 patients requiring hospital care. Since most patients with COVID-19 only develop mild symptoms, remote monitoring and assessment of symptoms of COVID-19 patients at home may help reduce preventable hospital utilization, morbidity, and mortality. Henry Ford Allegiance Health in Jackson, Michigan implemented a nurse-led, telephone-based, active management protocol for patients that tested positive for SARS-CoV-2 at their drive through testing site and who were self-isolating at home. The objective of this retrospective study was to assess the effectiveness of the protocol in reducing hospital utilization by patients who tested positive for SARS-CoV-2 between March 23, 2020 and May 31, 2020. The study included a total of 293 patients, with 154 patients in the pre-implementation group and 139 patients in the post-implementation group. Although the difference in the 30-day probability of hospital utilization between the study groups was not statistically significant, there was a reduction seen in the post-implementation group. The protocol also allowed ongoing assessment of COVID-19 patients with limited in-person interactions, thereby reducing the risk of infection for health care workers. With the increased use of telemedicine, this protocol could be used as a guide for other health systems looking to improve access to care for COVID-19 patients without increasing hospital utilization.
DOI: 10.6084/m9.figshare.16621501
title: Flight simulator code from Hoverflies use a time-compensated sun compass to orientate during autumn migration

description: Python scripts to capture flight simulator recordings
DOI: 10.6084/m9.figshare.16621501.v1
title: Flight simulator code from Hoverflies use a time-compensated sun compass to orientate during autumn migration

description: Python scripts to capture flight simulator recordings
DOI: 10.6084/m9.figshare.16621504
title: Moore's Rayleigh test from Hoverflies use a time-compensated sun compass to orientate during autumn migration

description: R-script for the Moore's Rayleigh test, corresponding rank-weighted mean direction and bootstrap confidence intervals.
DOI: 10.6084/m9.figshare.16621504.v1
title: Moore's Rayleigh test from Hoverflies use a time-compensated sun compass to orientate during autumn migration

description: R-script for the Moore's Rayleigh test, corresponding rank-weighted mean direction and bootstrap confidence intervals.
DOI: 10.6084/m9.figshare.16621507
title: Angle analysis from Hoverflies use a time-compensated sun compass to orientate during autumn migration

description: ImageJ script for angle analysis of video data
DOI: 10.6084/m9.figshare.16621507.v1
title: Angle analysis from Hoverflies use a time-compensated sun compass to orientate during autumn migration

description: ImageJ script for angle analysis of video data
DOI: 10.6084/m9.figshare.16621510
title: Raw data tables from Hoverflies use a time-compensated sun compass to orientate during autumn migration

description: Raw data for the sun compass and clock-shift experiments
DOI: 10.6084/m9.figshare.16621510.v1
title: Raw data tables from Hoverflies use a time-compensated sun compass to orientate during autumn migration

description: Raw data for the sun compass and clock-shift experiments
DOI: 10.6084/m9.figshare.16621495
title: Self- but not other- dimensions of mentalizing moderate the impairment associated with social anxiety in adolescents from the general population

description: This is the corresponding dataset for the manuscript entitled "Self- but other other- dimensions of mentalizing moderate the impairment associated with social anxiety in adolescents from the general population".
DOI: 10.6084/m9.figshare.16597997
title: RS_submesoscale

description: GRL dataset
DOI: 10.6084/m9.figshare.16597997.v2
title: RS_submesoscale

description: GRL dataset
DOI: 10.6084/m9.figshare.16597997.v1
title: RS_submesoscale

description: GRL dataset