cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.104620.v1
title: #SciFund Round 3 success and social media

description: The #SciFund Challenge is a crowdfunding effort for science. The second round ran during the months of November and December, 2012, and raised $75,978 for 33 scientific research projects, primarily in biology. Some basic information about this round of the challenge can be found at these posts on the #SciFund blog: The social media data here were compiled from public sources (e.g., the RocketHub website, video hosting counts) as soon as possible after the completion of #SciFund (i.e., within the hour after the projects closed).
DOI: 10.6084/m9.figshare.104618
title: README

description: Description of dataset and how to read it.
DOI: 10.6084/m9.figshare.104622.v1
title: [Teaching Program on Anatomical and Molecular Pathology] [Spanish]

description: Teaching program on anatomical and molecular pathology that includes both teaching techniques and content (general and specific objectives). Brief historic perspective and evaluation of research assessment are also included.
DOI: 10.6084/m9.figshare.104617
title: Networks Dataset

description: Network datasets and meta data using in work which develops a new model of spatial network structure: http://arxiv.org/abs/1210.4246
DOI: 10.6084/m9.figshare.104618.v1
title: README

description: Description of dataset and how to read it.
DOI: 10.6084/m9.figshare.104616
title: 3D plots of the Solar Neighborhood

description: Two are cross-eye stereograms, two are animations. The plot of all stars within 25 parsecs was created from the RECONS 25 pc sample as it existed in January, 2012. Stars are colored by V-K color, and sized by how far from a rough main sequence they are (the giants are, in fact, giant). These plots were made with a custom IDL 3D plotter. The young stars plots are stars in known nearby young associations (less than 100 Myr old) from Zuckerman & Song (2004,2011), Torres et al. (2006,2008), Lopez-Santiago et al. (2006), Malo et al. (2013), Shkolnik et al. (2009, 2012), Rodriguez et al. (2011,2013), Riedel et al. (2011,2014), and many other sources. Items are colored as follows: eps Cha & eta Cha: Magenta beta Pic: Blue TW Hya: Yellow Octans: Light blue Tuc-Hor: Red Columba: Orange-red Carina: Purple-red Argus: Green IC 2391 Supercluster: Light Green AB Dor: Orange Pleiades: Orange Ursa Major: Pink Hercules-Lyra: Light Magenta The flickering gray points are all stars with known parallaxes, to better demonstrate the relative density of field stars on the same scale. Because only measured trigonometric parallaxes have been used, there are many more objects in both sets than are displayed here. The flickering seems to be an artifact of Matplotlib 1.3's plotting routines.
DOI: 10.6084/m9.figshare.104613
title: Young Star convergence

description: These files demonstrate the property of convergence for nearby young associations (Zuckerman & Song 2004, Torres et al. 2008). When their proper motions of stars in a moving group are extended into full great circles (surrounding the sky), all the great circles intersect at two points: the convergent point, and the divergent point. Those points are equivalent to the vanishing points we're familiar with in parallel train tracks seeming to converge. This is not true of stars in general (represented here by stars within 25 pc of the Sun). Also shown on most of these graphs are the solar (northern hemisphere) and anti-solar (southern hemisphere) points; these are the directions the Sun is moving toward and away from. We are moving THROUGH the clouds of young stars, which is why most of them converge near the anti-solar point.
DOI: 10.6084/m9.figshare.104613.v1
title: Young Star convergence

description: These files demonstrate the property of convergence for nearby young associations (Zuckerman & Song 2004, Torres et al. 2008). When their proper motions of stars in a moving group are extended into full great circles (surrounding the sky), all the great circles intersect at two points: the convergent point, and the divergent point. Those points are equivalent to the vanishing points we're familiar with in parallel train tracks seeming to converge. This is not true of stars in general (represented here by stars within 25 pc of the Sun). Also shown on most of these graphs are the solar (northern hemisphere) and anti-solar (southern hemisphere) points; these are the directions the Sun is moving toward and away from. We are moving THROUGH the clouds of young stars, which is why most of them converge near the anti-solar point.
DOI: 10.6084/m9.figshare.104603
title: Molecular Dynamics Protocol with Gromacs 4.0.7

description: <strong>Molecular Dynamics Protocol with Gromacs 4.0.7</strong> This protocol had been used in the paper <em>Modeling and Molecular Dynamics of HPA-1a and -1b Polymorphisms: Effects on the Structure of the β3 Subunit of the αIIbβ3 Integrin</em> (PLoS ONE 7(11): e47304, 2012).
DOI: 10.6084/m9.figshare.104616.v3
title: 3D plots of the Solar Neighborhood

description: Two are cross-eye stereograms, two are animations. The plot of all stars within 25 parsecs was created from the RECONS 25 pc sample as it existed in January, 2012. Stars are colored by V-K color, and sized by how far from a rough main sequence they are (the giants are, in fact, giant). These plots were made with a custom IDL 3D plotter. The young stars plots are stars in known nearby young associations (less than 100 Myr old) from Zuckerman & Song (2004,2011), Torres et al. (2006,2008), Lopez-Santiago et al. (2006), Malo et al. (2013), Shkolnik et al. (2009, 2012), Rodriguez et al. (2011,2013), Riedel et al. (2011,2014), and many other sources. Items are colored as follows: eps Cha & eta Cha: Magenta beta Pic: Blue TW Hya: Yellow Octans: Light blue Tuc-Hor: Red Columba: Orange-red Carina: Purple-red Argus: Green IC 2391 Supercluster: Light Green AB Dor: Orange Pleiades: Orange Ursa Major: Pink Hercules-Lyra: Light Magenta The flickering gray points are all stars with known parallaxes, to better demonstrate the relative density of field stars on the same scale. Because only measured trigonometric parallaxes have been used, there are many more objects in both sets than are displayed here. The flickering seems to be an artifact of Matplotlib 1.3's plotting routines.
DOI: 10.6084/m9.figshare.104583
title: LC13, wt hybrid plants 9B-10B raw data, MGI19 indel marker.

description: MGI19 indel marker initial data analysis of qPCR results.
DOI: 10.6084/m9.figshare.104583.v1
title: LC13, wt hybrid plants 9B-10B raw data, MGI19 indel marker.

description: MGI19 indel marker initial data analysis of qPCR results.
DOI: 10.6084/m9.figshare.104602
title: Model of the Beta3 Subunit of Integrin alphaIIb/beta3

description: <strong>Structure model of the beta3 subunit of integrin alphaIIb/beta3</strong>.Building process is detailled in the Materials & Methods section of paper <em>Modeling and Molecular Dynamics of HPA-1a and -1b Polymorphisms: Effects on the Structure of the β3 Subunit of the αIIbβ3 Integrin</em> (PLOS ONE, 7(11): e47304, 2012)
DOI: 10.6084/m9.figshare.104582
title: LC13, wt hybrid plants 9B-10B raw data, F15H11 indel marker.

description: F15H11 indel marker initial data analysis of qPCR results.
DOI: 10.6084/m9.figshare.104581
title: LC13, wt hybrid plants 9B-10B raw data, T14G11 indel marker.

description: T14G11 indel marker initial data analysis of qPCR results.
DOI: 10.6084/m9.figshare.104603.v1
title: Molecular Dynamics Protocol with Gromacs 4.0.7

description: <strong>Molecular Dynamics Protocol with Gromacs 4.0.7</strong> This protocol had been used in the paper <em>Modeling and Molecular Dynamics of HPA-1a and -1b Polymorphisms: Effects on the Structure of the β3 Subunit of the αIIbβ3 Integrin</em> (PLoS ONE 7(11): e47304, 2012).
DOI: 10.6084/m9.figshare.104582.v1
title: LC13, wt hybrid plants 9B-10B raw data, F15H11 indel marker.

description: F15H11 indel marker initial data analysis of qPCR results.
DOI: 10.6084/m9.figshare.104602.v1
title: Model of the beta3 subunit of integrin alphaIIb/beta3

description: <strong>Structure model of the beta3 subunit of integrin alphaIIb/beta3</strong>.Building process is detailled in the Materials & Methods section of paper <em>Modeling and Molecular Dynamics of HPA-1a and -1b Polymorphisms: Effects on the Structure of the β3 Subunit of the αIIbβ3 Integrin</em> (PLOS ONE, 7(11): e47304, 2012)
DOI: 10.6084/m9.figshare.104580
title: Colx194E9, F1 #5, plant 54 raw data, T6H20 indel marker (2).

description: T6H20 indel marker initial data analysis of qPCR results (2).
DOI: 10.6084/m9.figshare.104581.v1
title: LC13, wt hybrid plants 9B-10B raw data, T14G11 indel marker.

description: T14G11 indel marker initial data analysis of qPCR results.
DOI: 10.6084/m9.figshare.104603.v2
title: Molecular Dynamics Protocol with Gromacs 4.0.7

description: <strong>Molecular Dynamics Protocol with Gromacs 4.0.7</strong> This protocol had been used in the paper <em>Modeling and Molecular Dynamics of HPA-1a and -1b Polymorphisms: Effects on the Structure of the β3 Subunit of the αIIbβ3 Integrin</em> (PLoS ONE 7(11): e47304, 2012).
DOI: 10.6084/m9.figshare.104577
title: Colx194E9, F1 #5, plant 54 raw data, T14G11 indel marker.

description: T14G11 indel marker initial data analysis of qPCR results.
DOI: 10.6084/m9.figshare.104579
title: Colx194E9, F1 #5, plant 54 raw data, T6H20 indel marker.

description: T6H20 indel marker initial data analysis of qPCR results.
DOI: 10.6084/m9.figshare.104580.v1
title: Colx194E9, F1 #5, plant 54 raw data, T6H20 indel marker (2).

description: T6H20 indel marker initial data analysis of qPCR results (2).
DOI: 10.6084/m9.figshare.104576
title: Colx194E9, F1 #5, plant 54 raw data, F6D8 indel marker.

description: F6D8 indel marker initial data analysis of qPCR results.
DOI: 10.6084/m9.figshare.104578
title: Colx194E9, F1 #5, plant 54 raw data, F15H11 indel marker.

description: F15H11 indel marker initial data analysis of qPCR results.
DOI: 10.6084/m9.figshare.104578.v1
title: Colx194E9, F1 #5, plant 54 raw data, F15H11 indel marker.

description: F15H11 indel marker initial data analysis of qPCR results.
DOI: 10.6084/m9.figshare.104576.v1
title: Colx194E9, F1 #5, plant 54 raw data, F6D8 indel marker.

description: F6D8 indel marker initial data analysis of qPCR results.
DOI: 10.6084/m9.figshare.104560
title: Particle number concentration measurements during the SOAP 2012 voyage

description: QA data from the condensation particle counters (CPC3007, CPC3010 and WCPC3781). HDF5 file generated with OCTAVE. To use, first extract (TAR-GZ) and in Octave: 'load cpc_data.h5'. The resulting structure is: cpc.cpc_data: Time series of the particle number concentration. cpc.cpc_headers: Headers describing the columns of the "cpc_data" array cpc.smooth_data: 10 minute moving average (NANs excluded) of the raw data. The moving average corresponds to the <strong>previous</strong> 10 minutes.
DOI: 10.6084/m9.figshare.104560.v1
title: SOAP 2012 CPC aerosol data

description: QA data from the condensation particle counters (CPC3007, CPC3010 and WCPC3781). HDF5 file generated with OCTAVE. To use, first extract (TAR-GZ) and in Octave: 'load cpc_data.h5'. The resulting structure is: cpc.cpc_data: Time series of the particle number concentration. cpc.cpc_headers: Headers describing the columns of the "cpc_data" array cpc.smooth_data: 10 minute moving average (NANs excluded) of the raw data. The moving average corresponds to the <strong>previous</strong> 10 minutes.
DOI: 10.6084/m9.figshare.104535
title: Interactive three-dimensional PDF: Micro-computed tomography of Stictocephala bisonia (Membracidae) showing the relationships between skeletal structures and muscles in T1 (surface rendering of 3D-reconstrution).

description: Micro-computed tomography of Stictocephala bisonia (Membracidae) showing the relationships between skeletal structures and muscles in T1 (surface rendering of 3D-reconstrution). The 3D reconstruction has been made by Frank Friedrich (Hamburg University). This interactive pdf has been used in our recent paper published in PlosOne (doi:10.1371/journal.pone.0030137).
DOI: 10.6084/m9.figshare.104560.v3
title: Particle number concentration measurements during the SOAP 2012 voyage

description: QA data from the condensation particle counters (CPC3007, CPC3010 and WCPC3781). HDF5 file generated with OCTAVE. To use, first extract (TAR-GZ) and in Octave: 'load cpc_data.h5'. The resulting structure is: cpc.cpc_data: Time series of the particle number concentration. cpc.cpc_headers: Headers describing the columns of the "cpc_data" array cpc.smooth_data: 10 minute moving average (NANs excluded) of the raw data. The moving average corresponds to the <strong>previous</strong> 10 minutes.
DOI: 10.6084/m9.figshare.104535.v1
title: Interactive three-dimensional PDF: Micro-computed tomography of Stictocephala bisonia (Membracidae) showing the relationships between skeletal structures and muscles in T1 (surface rendering of 3D-reconstrution).

description: Micro-computed tomography of Stictocephala bisonia (Membracidae) showing the relationships between skeletal structures and muscles in T1 (surface rendering of 3D-reconstrution). The 3D reconstruction has been made by Frank Friedrich (Hamburg University). This interactive pdf has been used in our recent paper published in PlosOne (doi:10.1371/journal.pone.0030137).
DOI: 10.6084/m9.figshare.104556.v1
title: Navigating A Lab's Biorepository

description: Our team is building a smarter biorepository system and we were looking for ways to be able to navigate faster. This view allows you to see from left to right the subcontainers samples are in. Clicking on the smaller rectangles will "zoom in" and the smaller "thinner" rectangles will expand. If you click on the black text, you'll be taken to another page that has more information about that container or sample. Made using the d3JS library for the specitrack.com.
DOI: 10.6084/m9.figshare.104560.v2
title: Particle number concentration measurements during the SOAP 2012

description: QA data from the condensation particle counters (CPC3007, CPC3010 and WCPC3781). HDF5 file generated with OCTAVE. To use, first extract (TAR-GZ) and in Octave: 'load cpc_data.h5'. The resulting structure is: cpc.cpc_data: Time series of the particle number concentration. cpc.cpc_headers: Headers describing the columns of the "cpc_data" array cpc.smooth_data: 10 minute moving average (NANs excluded) of the raw data. The moving average corresponds to the <strong>previous</strong> 10 minutes.
DOI: 10.6084/m9.figshare.104525
title: Gaussian Job Archive for CH4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104518
title: Galois paper workflow figure

description: VisTrails workflow for figuew in Galois paper
DOI: 10.6084/m9.figshare.104518.v1
title: Galois paper workflow figure

description: VisTrails workflow for figuew in Galois paper
DOI: 10.6084/m9.figshare.104409
title: Word Frequency Count from Network Review

description: These are files containing the data used in one of the plots shown in Figure 10 in my basic overview of Complex Networks (a review for Contemporary Physics, see below). Please cite the source if you use this data. However you could also do this yourself by using the LaTeX file via arXiv. It was produced by using various UNIX tools to strip the LaTeX commands to produce a list of words (one per line) followed by counting the number of times each line was repeated. I can see that there was no stopping or stemming e.g. "The" and "the" appear separately, "vertex" and "vertices" are counted separately. Files:- netrevcountrawdata.xls = rank and count for each word, along with plots netrevcountTabSeparated.txt = rank and count for each word in simple text format netrevindex.txt = raw data, unsorted (note there are some silly 'words' like "x" Original Text:- T.S.Evans<br>Complex Networks<br>Contemporary Physics 45 (2004) 455-475<br>DOI: 10.1080/00107510412331283531<br>arXiv:cond-mat/0405123 <br>http://arxiv.org/abs/cond-mat/0405123
DOI: 10.6084/m9.figshare.104406
title: A Novel Human-Infection-Derived Bacterium Provides Insights into the Evolutionary Origins of Mutualistic Insect–Bacterial Symbioses

description: Completed SOPE genome sequence and draft Strain HS genome sequence described in: Clayton AL, Oakeson KF, Gutin M, Pontes A, Dunn DM, von Niederhausern AC, Weiss RB, Fisher M, and Dale C.(2012) A Novel Human-Infection-Derived Bacterium Provides Insights into the Evolutionary Origins of Mutualistic Insect–Bacterial Symbioses. PLoS Genet 8(11): e1002990. doi:10.1371/journal.pgen.1002990 <strong>Please note that a paper is in preparation describing the complete annotation and analysis of the SOPE genome. This work has been carried out in collaboration with Abdelaziz Heddi (University of Lyon), Rosario Gil, Amparo Latorre and Andres Moya (University of Valencia). Because of the complex nature of the SOPE annotation, much effort has been put forth in generating an accurate annotation for this organism. Therefore, we respectfully request that other labs refrain from uploading a premature annotation of the SOPE genome to the GenBank database.</strong>
DOI: 10.6084/m9.figshare.104407
title: A Novel Human-Infection-Derived Bacterium Provides Insights into the Evolutionary Origins of Mutualistic Insect–Bacterial Symbioses

description: Completed SOPE genome sequence and draft Strain HS genome sequence described in: Clayton AL, Oakeson KF, Gutin M, Pontes A, Dunn DM, von Niederhausern AC, Weiss RB, Fisher M, and Dale C.(2012) A Novel Human-Infection-Derived Bacterium Provides Insights into the Evolutionary Origins of Mutualistic Insect–Bacterial Symbioses. PLoS Genet 8(11): e1002990. doi:10.1371/journal.pgen.1002990 <strong>Please note that a paper is in preparation describing the complete annotation and analysis of the SOPE genome. This work has been carried out in collaboration with Abdelaziz Heddi (University of Lyon), Rosario Gil, Amparo Latorre and Andres Moya (University of Valencia). Because of the complex nature of the SOPE annotation, much effort has been put forth in generating an accurate annotation for this organism. Therefore, we respectfully request that other labs refrain from uploading a premature annotation of the SOPE genome to the GenBank database.</strong> <strong> </strong>
DOI: 10.6084/m9.figshare.103901
title: Gaussian Job Archive for C15H26O9Ti

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.104406.v1
title: A Novel Human-Infection-Derived Bacterium Provides Insights into the Evolutionary Origins of Mutualistic Insect–Bacterial Symbioses

description: Completed SOPE genome sequence and draft Strain HS genome sequence described in: Clayton AL, Oakeson KF, Gutin M, Pontes A, Dunn DM, von Niederhausern AC, Weiss RB, Fisher M, and Dale C.(2012) A Novel Human-Infection-Derived Bacterium Provides Insights into the Evolutionary Origins of Mutualistic Insect–Bacterial Symbioses. PLoS Genet 8(11): e1002990. doi:10.1371/journal.pgen.1002990 <strong>Please note that a paper is in preparation describing the complete annotation and analysis of the SOPE genome. This work has been carried out in collaboration with Abdelaziz Heddi (University of Lyon), Rosario Gil, Amparo Latorre and Andres Moya (University of Valencia). Because of the complex nature of the SOPE annotation, much effort has been put forth in generating an accurate annotation for this organism. Therefore, we respectfully request that other labs refrain from uploading a premature annotation of the SOPE genome to the GenBank database.</strong>
DOI: 10.6084/m9.figshare.104407.v1
title: A Novel Human-Infection-Derived Bacterium Provides Insights into the Evolutionary Origins of Mutualistic Insect–Bacterial Symbioses

description: Completed SOPE genome sequence and draft Strain HS genome sequence described in: Clayton AL, Oakeson KF, Gutin M, Pontes A, Dunn DM, von Niederhausern AC, Weiss RB, Fisher M, and Dale C.(2012) A Novel Human-Infection-Derived Bacterium Provides Insights into the Evolutionary Origins of Mutualistic Insect–Bacterial Symbioses. PLoS Genet 8(11): e1002990. doi:10.1371/journal.pgen.1002990 <strong>Please note that a paper is in preparation describing the complete annotation and analysis of the SOPE genome. This work has been carried out in collaboration with Abdelaziz Heddi (University of Lyon), Rosario Gil, Amparo Latorre and Andres Moya (University of Valencia). Because of the complex nature of the SOPE annotation, much effort has been put forth in generating an accurate annotation for this organism. Therefore, we respectfully request that other labs refrain from uploading a premature annotation of the SOPE genome to the GenBank database.</strong> <strong> </strong>
DOI: 10.6084/m9.figshare.103899
title: Transmission electron microscopy of a chc1 (clathrin) mutant in yeast

description: Electron micrographs of <em>chc1</em> (clathrin heavy chain) mutant yeast cells.
DOI: 10.6084/m9.figshare.103900
title: Gaussian Job Archive for C15H26O9Ti

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.103901.v1
title: Gaussian Job Archive for C15H26O9Ti

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.103900.v1
title: Gaussian Job Archive for C15H26O9Ti

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.