cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3029650
title: An engineered endomorphin-2 gene for morphine withdrawal syndrome

description: data files
DOI: 10.6084/m9.figshare.3079975.v32
title: Contribution Ontology sub graph

description: Credit Subgraph derived from https://github.com/openrif/contribution-ontology. Purpose: a cutdown set of triples to assist with credit data entry scenarios. Additional metadata is provided for illustration purposes
DOI: 10.6084/m9.figshare.3029650.v1
title: An engineered endomorphin-2 gene for morphine withdrawal syndrome

description: data files
DOI: 10.6084/m9.figshare.3027385
title: Surface model of the natural footprint cast of T3/18 from Münchehagen (Lower Cretaceous, Germany)

description: Textured photogrammetric surface model of the natural cast of T3/18 from Münchehagen, Germany, representing the footprint of a theropod dinosaur.
DOI: 10.6084/m9.figshare.3027553
title: Surface model of a slab containing the natural casts of the theropod dinosaur footprint T3/22 and the ornithopod dinosaur footprints I1/16 to I1/17 at Münchehagen (Lower Cretaceous, Germany)

description: Textured surface model of a slab containing the natural casts of the theropod dinosaur footprint T3/22 and the ornithopod dinosaur footprints I1/16 to I1/17, from Münchehagen (Lower Cretaceous, Germany).
DOI: 10.6084/m9.figshare.3079975.v34
title: Contribution Ontology sub graph

description: Credit Subgraph derived from https://github.com/openrif/contribution-ontology. Purpose: a cutdown set of triples to assist with credit data entry scenarios. Additional metadata is provided for illustration purposes
DOI: 10.6084/m9.figshare.3027211
title: Surface model of the T3 theropod dinosaur trackway (T3/25 to T3/48) at Münchehagen (Lower Cretaceous, Germany)

description: Textured photogrammetric surface model of a section of the T3 theropod dinosaur trackway (footprints T3/25 to T3/48), at it was exposed in situ in 2011, based on photographs made by Oliver Wings in 2011.
DOI: 10.6084/m9.figshare.3027067
title: Surface model of the T2 theropod dinosaur trackway (T2/16 to T2/24) at Münchehagen (Lower Cretaceous, Germany)

description: Textured photogrammetric surface model of a section of the T2 theropod dinosaur trackway, at it was in situ, based on photographs made by Oliver Wings.
DOI: 10.6084/m9.figshare.3079975.v33
title: Contribution Ontology sub graph

description: Credit Subgraph derived from https://github.com/openrif/contribution-ontology. Purpose: a cutdown set of triples to assist with credit data entry scenarios. Additional metadata is provided for illustration purposes
DOI: 10.6084/m9.figshare.3025144
title: Surface model of the T2 theropod dinosaur trackway (T2/1 to T2/15) at Münchehagen (Lower Cretaceous, Germany)

description: Textured photogrammetric surface model of a section of the T2 theropod dinosaur trackway (footprints T2/1 to T2/15). This trackway section was excavated and reassembled for display in the Dinosaurier Freilichtmuseum Münchehagen. The surface model shows the reassembled section, and is based on photographs made by Oliver Wings in 2015.
DOI: 10.6084/m9.figshare.3026863
title: Surface model of the T2 theropod dinosaur trackway (T2/11 to T2/16) at Münchehagen (Lower Cretaceous, Germany)

description: Surface model of the T2 theropod dinosaur trackway (T2/11 to T2/16) at Münchehagen (Lower Cretaceous, Germany), at it was in situ after excavation.
DOI: 10.6084/m9.figshare.3023104
title: Transcriptomic features associated with energy production in the muscles of Pacific bluefin tuna and Pacific cod

description: Bluefin tuna are high-performance swimmers and top predators in the open ocean. Their swimming is grounded by unique features including an exceptional glycolytic potential in white muscle, which is supported by high enzymatic activities. Here we performed high-throughput RNA sequencing (RNA-Seq) in muscles of the Pacific bluefin tuna (<i>Thunnus orientalis</i>) and Pacific cod (<i>Gadus macrocephalus</i>) and conducted a comparative transcriptomic analysis of genes related to energy production. We found that the total expression of glycolytic genes was much higher in the white muscle of tuna than in the other muscles, and that the expression of only six genes for glycolytic enzymes accounted for 83.4% of the total. These expression patterns were in good agreement with the patterns of enzyme activity previously reported. The findings suggest that the mRNA expression of glycolytic genes may contribute directly to the enzymatic activities in the muscles of tuna. Comparisons of the rate of total expression levels of genes involved in each of three energy-generating pathways.
DOI: 10.6084/m9.figshare.3022909
title: Cytotoxic evaluation of natural and synthetic callipeltins: a revision of cytotoxicity of callipeltin B

description: The cytotoxic evaluation of natural and synthetic callipeltins is described. Cyclic depsipeptide callipeltin B and linear peptides callipeltins E and M synthesized by us showed no cytotoxic activity. In contrast, natural callipeltin B purified from <i>Callipelta</i> sp. showed CC<sub>50</sub> = 130 μM against Hela cells. We found that purified callipeltin B included the contamination of callipeltins C and H at a ratio of approximately 15%. These results suggested that the cytotoxicity of natural callipeltin B was derived from callipeltins C and H.
DOI: 10.6084/m9.figshare.3023104.v1
title: Transcriptomic features associated with energy production in the muscles of Pacific bluefin tuna and Pacific cod

description: Bluefin tuna are high-performance swimmers and top predators in the open ocean. Their swimming is grounded by unique features including an exceptional glycolytic potential in white muscle, which is supported by high enzymatic activities. Here we performed high-throughput RNA sequencing (RNA-Seq) in muscles of the Pacific bluefin tuna (<i>Thunnus orientalis</i>) and Pacific cod (<i>Gadus macrocephalus</i>) and conducted a comparative transcriptomic analysis of genes related to energy production. We found that the total expression of glycolytic genes was much higher in the white muscle of tuna than in the other muscles, and that the expression of only six genes for glycolytic enzymes accounted for 83.4% of the total. These expression patterns were in good agreement with the patterns of enzyme activity previously reported. The findings suggest that the mRNA expression of glycolytic genes may contribute directly to the enzymatic activities in the muscles of tuna. Comparisons of the rate of total expression levels of genes involved in each of three energy-generating pathways.
DOI: 10.6084/m9.figshare.3022909.v1
title: Cytotoxic evaluation of natural and synthetic callipeltins: a revision of cytotoxicity of callipeltin B

description: The cytotoxic evaluation of natural and synthetic callipeltins is described. Cyclic depsipeptide callipeltin B and linear peptides callipeltins E and M synthesized by us showed no cytotoxic activity. In contrast, natural callipeltin B purified from <i>Callipelta</i> sp. showed CC<sub>50</sub> = 130 μM against Hela cells. We found that purified callipeltin B included the contamination of callipeltins C and H at a ratio of approximately 15%. These results suggested that the cytotoxicity of natural callipeltin B was derived from callipeltins C and H.
DOI: 10.6084/m9.figshare.3023014
title: Direct visualization of replication dynamics in early zebrafish embryos

description: We analyzed DNA replication in early zebrafish embryos. The replicating DNA of whole embryos was labeled with the thymidine analog 5-ethynyl-2ʹ-deoxyuridine (EdU), and spatial regulation of replication sites was visualized in single embryo-derived cells. The results unveiled uncharacterized replication dynamics during zebrafish early embryogenesis.
DOI: 10.6084/m9.figshare.3023014.v1
title: Direct visualization of replication dynamics in early zebrafish embryos

description: We analyzed DNA replication in early zebrafish embryos. The replicating DNA of whole embryos was labeled with the thymidine analog 5-ethynyl-2ʹ-deoxyuridine (EdU), and spatial regulation of replication sites was visualized in single embryo-derived cells. The results unveiled uncharacterized replication dynamics during zebrafish early embryogenesis.
DOI: 10.6084/m9.figshare.3007282
title: Copy number variants in the sheep genome detected using multiple approaches

description: Roche NimbleGen CGH array data. See readme_v2.docx for details.<br>
DOI: 10.6084/m9.figshare.2998978
title: Barriers, pathways and processes for uptake, translocation and accumulation of nanomaterials in plants – Critical review

description: Uptake, transport and toxicity of engineered nanomaterials (ENMs) into plant cells are complex processes that are currently still not well understood. Parts of this problem are the multifaceted plant anatomy, and analytical challenges to visualize and quantify ENMs in plants. We critically reviewed the currently known ENM uptake, translocation, and accumulation processes in plants. A vast number of studies showed uptake, clogging, or translocation in the apoplast of plants, most notably of nanoparticles with diameters much larger than the commonly assumed size exclusion limit of the cell walls of ∼5–20 nm. Plants that tended to translocate less ENMs were those with low transpiration, drought-tolerance, tough cell wall architecture, and tall growth. In the absence of toxicity, accumulation was often linearly proportional to exposure concentration. Further important factors strongly affecting ENM internalization are the cell wall composition, mucilage, symbiotic microorganisms (mycorrhiza), the absence of a cuticle (submerged plants) and stomata aperture. Mostly unexplored are the roles of root hairs, leaf repellency, pit membrane porosity, xylem segmentation, wounding, lateral roots, nodes, the Casparian band, hydathodes, lenticels and trichomes. The next steps towards a realistic risk assessment of nanoparticles in plants are to measure ENM uptake rates, the size exclusion limit of the apoplast and to unravel plant physiological features favoring uptake.
DOI: 10.6084/m9.figshare.3007282.v1
title: Copy number variants in the sheep genome detected using multiple approaches

description: Roche NimbleGen CGH array data<br>
DOI: 10.6084/m9.figshare.2998969
title: Nanosilver pathophysiology in earthworms: Transcriptional profiling of secretory proteins and the implication for the protein corona

description: Previously we have identified lysenin as a key protein constituent of the secretome from <i>Eisenia fetida</i> coelomocytes and revealed its critical importance in priming interactions between the cells and the protein corona around nanosilver. As alterations of the protein environment can directly affect the corona composition, the extent to which nanoparticles influence the cells’ protein secretion profile is of remarkable interest that has rarely acquired attention. Here, we have probed transcriptional responses of <i>E. fetida</i> coelomocytes to the representative nanosilver NM-300K (15 nm) in a time-dependent manner (2, 4, 8 and 24 h at a low-cytotoxic concentration), and examined the implication of the temporal changes in transcriptional profiles of secretory proteins with a particular reference to that of lysenin. NM-300K was accumulated in/at the cells and <i>lysenin</i> was, after transient induction, gradually suppressed over time indicating a negative feedback cycle. This may limit further enrichment of lysenin in the corona and thereby decrease the lysenin-assisted uptake of the nanoparticles. Other differentially expressed genes were those involved in metal stress (likewise in AgNO<sub>3</sub>-stressed cells) and in Toll-like receptor (TLR) signaling. This offers an intriguing perspective of the nanosilver pathophysiology in earthworms, in which the conserved pattern recognition receptor TLRs may play an effector role.
DOI: 10.6084/m9.figshare.2998570
title: Tennis DeIdentified Data.sav

description: The SPSS data files for 4 sports competitions in which the length of post-conflict affiliation has been recorded.
DOI: 10.6084/m9.figshare.2998570.v1
title: Tennis DeIdentified Data.sav

description: The SPSS data files for 4 sports competitions in which the length of post-conflict affiliation has been recorded.
DOI: 10.6084/m9.figshare.2998969.v2
title: Nanosilver pathophysiology in earthworms: Transcriptional profiling of secretory proteins and the implication for the protein corona

description: Previously we have identified lysenin as a key protein constituent of the secretome from <i>Eisenia fetida</i> coelomocytes and revealed its critical importance in priming interactions between the cells and the protein corona around nanosilver. As alterations of the protein environment can directly affect the corona composition, the extent to which nanoparticles influence the cells’ protein secretion profile is of remarkable interest that has rarely acquired attention. Here, we have probed transcriptional responses of <i>E. fetida</i> coelomocytes to the representative nanosilver NM-300K (15 nm) in a time-dependent manner (2, 4, 8 and 24 h at a low-cytotoxic concentration), and examined the implication of the temporal changes in transcriptional profiles of secretory proteins with a particular reference to that of lysenin. NM-300K was accumulated in/at the cells and <i>lysenin</i> was, after transient induction, gradually suppressed over time indicating a negative feedback cycle. This may limit further enrichment of lysenin in the corona and thereby decrease the lysenin-assisted uptake of the nanoparticles. Other differentially expressed genes were those involved in metal stress (likewise in AgNO<sub>3</sub>-stressed cells) and in Toll-like receptor (TLR) signaling. This offers an intriguing perspective of the nanosilver pathophysiology in earthworms, in which the conserved pattern recognition receptor TLRs may play an effector role.
DOI: 10.6084/m9.figshare.2991388
title: Stout-Martin RAP Do File R&R 2-6-2016-Submit.do

description: To use this data set, you must first download the 2006 and 2010 Cooperative Congressional Election studies from http://projects.iq.harvard.edu/cces/home<br>You must then place the paths to these files into the do file. These are marked by asterisks.<br>
DOI: 10.6084/m9.figshare.2991388.v1
title: Stout-Martin RAP Do File R&R 2-6-2016-Submit.do

description: To use this data set, you must first download the 2006 and 2010 Cooperative Congressional Election studies from http://projects.iq.harvard.edu/cces/home<br>You must then place the paths to these files into the do file. These are marked by asterisks.<br>
DOI: 10.6084/m9.figshare.2986000
title: Data from: From memory to attitude: The neurocognitive process beyond euthanasia acceptance.

description: Numerous questionnaire studies on attitudes towards euthanasia produced conflicting results, precluding any general conclusion. This might be due to the fact that human behavior can be influenced by automatically triggered attitudes, which represent ingrained associations in memory and cannot be assessed by standard questionnaires, but require indirect measures such as reaction times (RT) or electroencephalographic recording (EEG). Event related potentials (ERPs) of the EEG and RT during an affective priming task were assessed to investigate the impact of automatically triggered attitudes and were compared to results of an explicit questionnaire. Explicit attitudes were ambivalent. Reaction time data showed neither positive nor negative associations towards euthanasia. ERP analyses revealed an N400 priming effect with lower mean amplitudes when euthanasia was associated with negative words. The euthanasia-related modulation of the N400 component shows an integration of the euthanasia object in negatively valenced associative neural networks. The integration of all measures suggests a bottom-up process of attitude activation, where automatically triggered negative euthanasia-relevant associations can become more ambiguous with increasing time in order to regulate the bias arising from automatic processes. These data suggest that implicit measures may make an important contribution to the understanding of euthanasia-related attitudes.
DOI: 10.6084/m9.figshare.2993812.v1
title: Generic stabilisability for time-delayed feedback control

description: Supplementary material and supporting code for the paper "Generic stabilisability for time-delayed feedback control" (Jan Sieber), arxiv preprint at http://arxiv.org/abs/1508.05671<br>
DOI: 10.6084/m9.figshare.2986000.v1
title: Data from: From memory to attitude: The neurocognitive process beyond euthanasia acceptance.

description: Numerous questionnaire studies on attitudes towards euthanasia produced conflicting results, precluding any general conclusion. This might be due to the fact that human behavior can be influenced by automatically triggered attitudes, which represent ingrained associations in memory and cannot be assessed by standard questionnaires, but require indirect measures such as reaction times (RT) or electroencephalographic recording (EEG). Event related potentials (ERPs) of the EEG and RT during an affective priming task were assessed to investigate the impact of automatically triggered attitudes and were compared to results of an explicit questionnaire. Explicit attitudes were ambivalent. Reaction time data showed neither positive nor negative associations towards euthanasia. ERP analyses revealed an N400 priming effect with lower mean amplitudes when euthanasia was associated with negative words. The euthanasia-related modulation of the N400 component shows an integration of the euthanasia object in negatively valenced associative neural networks. The integration of all measures suggests a bottom-up process of attitude activation, where automatically triggered negative euthanasia-relevant associations can become more ambiguous with increasing time in order to regulate the bias arising from automatic processes. These data suggest that implicit measures may make an important contribution to the understanding of euthanasia-related attitudes.
DOI: 10.6084/m9.figshare.2975923
title: Dataset for 'Photoswitchable basicity through the use of azoheteroarenes'

description: Dataset to accompany article titled 'Photoswitchable basicity through the use of azoheteroarenes', published in ChemComm, 2016. DOI: 10.1039/C5CC10380K Included data: log files for computational work and txt files for extracted shielding tensors for GIAO NMR calculations. Characterisation of compound 1: NMR (.ir files), IR, MS UV/vis data (.std or .sd files)
DOI: 10.6084/m9.figshare.2993812.v2
title: Generic stabilisability for time-delayed feedback control

description: Supplementary material and supporting code for the paper "Generic stabilisability for time-delayed feedback control" (Jan Sieber), arxiv preprint at http://arxiv.org/abs/1508.05671<br>
DOI: 10.6084/m9.figshare.2977240
title: Calcium-phosphate-osteopontin particles for caries control

description: Caries is caused by acid production in biofilms on dental surfaces. Preventing caries therefore involves control of microorganisms and/or the acid produced. Here, calcium-phosphate-osteopontin particles are presented as a new approach to caries control. The particles are made by co-precipitation and designed to bind to bacteria in biofilms, impede biofilm build-up without killing the microflora, and release phosphate ions to buffer bacterial acid production if the pH decreases below 6. Analysis of biofilm formation and pH in a five-species biofilm model for dental caries showed that treatment with particles or pure osteopontin led to less biofilm formation compared to untreated controls or biofilms treated with osteopontin-free particles. The anti-biofilm effect can thus be ascribed to osteopontin. The particles also led to a slower acidification of the biofilm after exposure to glucose, and the pH always remained above 5.5. Hence, calcium-phosphate-osteopontin particles show potential for applications in caries control.
DOI: 10.6084/m9.figshare.2977240.v1
title: Calcium-phosphate-osteopontin particles for caries control

description: Caries is caused by acid production in biofilms on dental surfaces. Preventing caries therefore involves control of microorganisms and/or the acid produced. Here, calcium-phosphate-osteopontin particles are presented as a new approach to caries control. The particles are made by co-precipitation and designed to bind to bacteria in biofilms, impede biofilm build-up without killing the microflora, and release phosphate ions to buffer bacterial acid production if the pH decreases below 6. Analysis of biofilm formation and pH in a five-species biofilm model for dental caries showed that treatment with particles or pure osteopontin led to less biofilm formation compared to untreated controls or biofilms treated with osteopontin-free particles. The anti-biofilm effect can thus be ascribed to osteopontin. The particles also led to a slower acidification of the biofilm after exposure to glucose, and the pH always remained above 5.5. Hence, calcium-phosphate-osteopontin particles show potential for applications in caries control.
DOI: 10.6084/m9.figshare.2993812.v3
title: Generic stabilisability for time-delayed feedback control

description: Supplementary material and supporting code for the paper "Generic stabilisability for time-delayed feedback control" (Jan Sieber), arxiv preprint at http://arxiv.org/abs/1508.05671<br>
DOI: 10.6084/m9.figshare.2972329
title: Surface model of the I1 ornithopod dinosaur trackway (I1/17 to I1/53) at Münchehagen (Lower Cretaceous, Germany)

description: Textured photogrammetric surface model of a section of the I1 ornithopod dinosaur trackway, at it was exposed in situ in 2011, based on photographs made by Oliver Wings in 2011.
DOI: 10.6084/m9.figshare.2975923.v1
title: Dataset for 'Photoswitchable basicity through the use of azoheteroarenes'

description: Dataset to accompany article titled 'Photoswitchable basicity through the use of azoheteroarenes', published in ChemComm, 2016. DOI: 10.1039/C5CC10380K Included data: log files for computational work and txt files for extracted shielding tensors for GIAO NMR calculations. Characterisation of compound 1: NMR (.ir files), IR, MS UV/vis data (.std or .sd files)
DOI: 10.6084/m9.figshare.2993812.v4
title: Generic stabilisability for time-delayed feedback control

description: Supplementary material and supporting code for the paper "Generic stabilisability for time-delayed feedback control" (Jan Sieber), arxiv preprint at http://arxiv.org/abs/1508.05671<br>
DOI: 10.6084/m9.figshare.2993812.v5
title: Supporting material for Generic stabilisability for time-delayed feedback control

description: Supplementary material and supporting code for the paper "Generic stabilisability for time-delayed feedback control" (Jan Sieber), arxiv preprint at http://arxiv.org/abs/1508.05671<br>
DOI: 10.6084/m9.figshare.2972329.v1
title: Surface model of the I1 ornithopod dinosaur trackway at Münchehagen (Lower Cretaceous, Germany)

description: Textured photogrammetric surface model of a section of the I1 ornithopod dinosaur trackway, at it was exposed in situ in 2011, based on photographs made by Oliver Wings in 2011.
DOI: 10.6084/m9.figshare.2971957
title: long & short term distribution comparison.xlsm

description: working file
DOI: 10.6084/m9.figshare.2993812.v6
title: Generic stabilisability for time-delayed feedback control (Supplementary material)

description: Supplementary material and supporting code for the paper "Generic stabilisability for time-delayed feedback control" (Jan Sieber), arxiv preprint at http://arxiv.org/abs/1508.05671<br>
DOI: 10.6084/m9.figshare.2962231
title: Data for insurance study

description: Data for manuscript entitled "Don't worry, it's insured: The deterrence of insurance fraud"