cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14823693
title: Reproduction package for "Cross-Comparison of Sampling Algorithms for Pulse Profile Modeling of PSR J0740+6620"

description: Data files, python scripts, and notebooks to reproduce the output of the paper "Cross-Comparison of Sampling Algorithms for Pulse Profile Modeling of PSR J0740+6620" by Hoogkamer et al. (2025; arXiv:2502.13682).

Please refer to the README for detailed information.
DOI: 10.5281/zenodo.14894180
title: Dataset for PDB 6r72 Crystal structure of BmrA-E504A in an outward-facing conformation

description: Dataset of raw diffraction images for the E504 catalytic inactive mutant of the multidrug transporter BmrA, corresponding to the PDB entry 6r72 (https://www.ebi.ac.uk/pdbe/entry/pdb/6r72). 

2 datasets were collected on a single crystal on beamline PX2 (SOLEIL) on 2017-07-05.

The crystal is a long rod, which was collected at 5% transmission for a low-dose dataset at a single location. Then, a helicoidal data collection procedure was started at 100% transmission. For the helicoidal data collection, the first 1200 frames were discarded during data processing. 

Wavelength: 0.980112195015

Detector distance: 300.045013428

Exposure: 0.025 sec. 

Oscillation range: 0.1°/image. 

A XDS.INP file is included as reference with the data-processing details. 

Images are named: V-CK63-8-ld_1_data_xxxxxx.h5  for the low-dose data collection. 

Images are named: V-CK63-8-helical_1_data_xxxxxx.h5  for the helical data collection.
DOI: 10.5281/zenodo.14894181
title: Dataset for PDB 6r72 Crystal structure of BmrA-E504A in an outward-facing conformation

description: Dataset of raw diffraction images for the E504 catalytic inactive mutant of the multidrug transporter BmrA, corresponding to the PDB entry 6r72 (https://www.ebi.ac.uk/pdbe/entry/pdb/6r72). 

2 datasets were collected on a single crystal on beamline PX2 (SOLEIL) on 2017-07-05.

The crystal is a long rod, which was collected at 5% transmission for a low-dose dataset at a single location. Then, a helicoidal data collection procedure was started at 100% transmission. For the helicoidal data collection, the first 1200 frames were discarded during data processing. 

Wavelength: 0.980112195015

Detector distance: 300.045013428

Exposure: 0.025 sec. 

Oscillation range: 0.1°/image. 

A XDS.INP file is included as reference with the data-processing details. 

Images are named: V-CK63-8-ld_1_data_xxxxxx.h5  for the low-dose data collection. 

Images are named: V-CK63-8-helical_1_data_xxxxxx.h5  for the helical data collection.
DOI: 10.17866/rd.salford.11246003
title: Shear bond and wheel track test results

description: Interface shear strength and rutting at 25 <sup>o</sup>C and 4 <sup>o</sup>C for static (A) and dynamic
(B) pothole repairs.
DOI: 10.17866/rd.salford.11246003.v1
title: Shear bond and wheel track test results

description: Interface shear strength and rutting at 25 <sup>o</sup>C and 4 <sup>o</sup>C for static (A) and dynamic
(B) pothole repairs.
DOI: 10.15468/dl.mzhkv3
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is RIO GRaNdE dO SUL",
 "TaxonKey is Eleoscytalopus indigoticus (Wied-Neuwied, 1831)"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003588-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17866/rd.salford.11295641
title: Pillars of Wisdom - Read First

description: This is a description of the items of the evidence made available in this collection
DOI: 10.17866/rd.salford.11295641.v1
title: Pillars of Wisdom - Read First

description: This is a description of the items of the evidence made available in this collection
DOI: 10.5281/zenodo.14901044
title: Table S3 - Slabtop P-T profiles

description: Supplementary Table for publication:

Klein, B.Z., & Behn, M.D. (2025) The impact of mélange formation on the rheology and H2O budget of the subduction zone interface, with implications for diapir nucleation. Geophysical Research Letters
DOI: 10.5281/zenodo.13240335
title: IOC World Bird List (IOC) - active: IOC World Bird List with higherClassification

description: This is a Darwin Core Archive version of data from the [IOC World Bird List](http://www.worldbirdnames.org/ "http://www.worldbirdnames.org"). The IOC World Bird List is an open access resource of the international community of ornithologists. Their goal is to facilitate worldwide communication in ornithology and conservation based on an up-to-date classification of world birds and a set of English names that follows explicit guidelines for spelling and construction (Gill & Wright 2006). Citation: Gill, F & D Donsker (Eds). 2017. IOC World Bird List (v 7.1). doi: [10.14344/IOC.ML.7.1] (http://doi.org/10.14344/IOC.ML.7.1) [More...](http://www.worldbirdnames.org/ "http://www.worldbirdnames.org")
description: ####--- __EOL DwCA resource last updated: Jul 21, 2024 05:36 AM__ ---####
The Encyclopedia of Life (EOL, eol.org) aggregates biodiversity information from more than 400 sources and provides access to the data through taxon pages, visual query and application programming interfaces. Scientific names are essential elements of the data integration infrastructure, but their shortcomings as key identifiers are well documented (Patterson et al., 2016). Complex automated workflows and continuous manual curation are required to address idiosyncrasies of source taxonomies, variation in data quality, and conflicting taxonomic opinions. 

To achieve a harmonized taxonomic view of EOL content, names from data sources are mapped to a dynamic reference hierarchy ([see current version here](https://opendata.eol.org/dataset/tram-807-808-809-810-dh-v1-1/resource/00adb47b-57ed-4f6b-8f66-83bfdb5120e8)) using an algorithm that leverages canonical name strings, hierarchical information (ancestry, descendants), taxonomic ranks, synonym data, and author strings. Names that cannot be associated with a reference taxon are still accessible, but their unmapped status excludes them and any associated content from certain core EOL functions.

For more information about the EOL taxonomy, see [EOL Dynamic Hierarchy](https://eol.org/docs/eol-dynamic-hierarchy)
DOI: 10.15468/dl.5u44jw
title: Occurrence Download

description: A dataset containing 223 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coffea eugenioides S.Moore"
 ]
}

 The dataset includes 223 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003589-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14899794
title: Raw eye-tracking data for "Volatility-driven learning in human infants"

description: Raw data was collected from a Tobii eye-tracker via the Python package tobii_research. The full code to analyse the data is available on OSF: https://osf.io/b736k/
DOI: 10.5281/zenodo.14899795
title: Raw eye-tracking data for "Volatility-driven learning in human infants"

description: Raw data was collected from a Tobii eye-tracker via the Python package tobii_research. The full code to analyse the data is available on OSF: https://osf.io/b736k/
DOI: 10.17866/rd.salford.11295632
title: The Kraken Wakes - Read First

description: This gives details of the evidence made available in the collection relating to the composition of the score to The Kraken Wakes, a BBC Radio 4 drama adaptation by Val McDermid.
DOI: 10.17866/rd.salford.11295632.v1
title: The Kraken Wakes - Read First

description: This gives details of the evidence made available in the collection relating to the composition of the score to The Kraken Wakes, a BBC Radio 4 drama adaptation by Val McDermid.
DOI: 10.15468/dl.pvuqrp
title: Occurrence Download

description: A dataset containing 29092 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyclamen hederifolium Aiton",
 "Year 1956-2025"
 ]
}

 The dataset includes 29092 records from 293 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003590-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26541236
title: Integrated ceRNAs regulating relationship and bioinformatics analysis to study the molecular mechanisms of the inhibition of puerarin on bladder cancer cell

description: Based on previous experiments, we demonstrated puerarin inhibited the proliferation of BC T24 cells. To further explore the molecular mechanisms, whole transcriptome sequencing combined with bioinformatics analysis was performed. The results showed puerarin significantly inhibited T24 proliferation and pathway enrichment analysis of differentially expressed RNAs were mainly enriched in Cell cycle, PI3K/AKT, Ras family chromatin remodeling. lncRNAs and circRNAs may regulate miRNAs, thereby regulating the expression of ITGA1, PAK2 and UTRN. The predicted upstream transcription factor ERG and puerarin were well docked, which may be one of the underlying mechanisms by which puerarin inhibiting BC cells.
DOI: 10.6084/m9.figshare.26541236.v1
title: Integrated ceRNAs regulating relationship and bioinformatics analysis to study the molecular mechanisms of the inhibition of puerarin on bladder cancer cell

description: Based on previous experiments, we demonstrated puerarin inhibited the proliferation of BC T24 cells. To further explore the molecular mechanisms, whole transcriptome sequencing combined with bioinformatics analysis was performed. The results showed puerarin significantly inhibited T24 proliferation and pathway enrichment analysis of differentially expressed RNAs were mainly enriched in Cell cycle, PI3K/AKT, Ras family chromatin remodeling. lncRNAs and circRNAs may regulate miRNAs, thereby regulating the expression of ITGA1, PAK2 and UTRN. The predicted upstream transcription factor ERG and puerarin were well docked, which may be one of the underlying mechanisms by which puerarin inhibiting BC cells.
DOI: 10.6084/m9.figshare.26661397
title: Genome mining for ribosomally synthesized and post-translationally modified peptides (RiPPs) in <i>Streptomyces</i> bacteria

description: Ribosomally synthesized post-translationally modified peptides (RiPPs) are a novel category of bioactive natural products (NPs). <i>Streptomyces</i> bacteria are a potential source of many bioactive NPs. Limited opportunities are available to characterize all the bioactive NP gene clusters. In this study, 410 sequences of <i>Streptomyces</i> were analyzed for RiPPs through genome mining using the National Center for Biotechnology Information (NCBI), by combining BAGEL and anti-SMASH. A total of 4098 RiPPs were found; including both classified (lanthipeptide, RiPP-like, bacteriocin, LAPs, lassopeptide, thiopeptides) and nonclassified RiPPs. Soil was identified as a rich habitat for RiPPs. These data may offer alternative future remedies for various health issues.
DOI: 10.6084/m9.figshare.28219102.v1
title: Seasonal variation in roost climate and emergence behaviour in a colony of the highly gregarious wrinkle-lipped free-tailed bat (<i>Mops plicatus</i>)

description: As obligate nocturnal mammals, most bats spend the day hiding in dark shelters, sometimes as gregarious colonies. Roosting in such large colonies may have the advantage of reducing thermoregulatory costs, as the heat dissipated by thousands of bodies raises the temperature of the cave interior. However, bats in large aggregations may also suffer from increased predation risk. Here we studied the effect of a highly gregarious Palaeotropical bat, the wrinkle-lipped free-tailed bat (<i>Mops plicatus</i>), on cave temperature and the factors that influence its emergence behaviour. We studied cave temperature, prey abundance, emergence behaviour and attack rates by birds of prey during colony emergence. The study was made at Khao Wongkot Cave, counting more than one million individuals. In all seasons, we observed that the presence of <i>M. plicatus</i> caused relatively higher temperatures of around 30°C inside the cave, while temperatures outside were lower and more variable. This suggests that the body heat of aggregated bats raised the temperature inside the cave, presumably close to the thermo-neutral zone at the roosting sites of bats. Arthropod abundance was highest during late pregnancy/early lactation and lowest during late lactation/post lactation. Bats emerged earliest during the late wet season and latest during the hot season. During periods of high predation risk, bats always emerged as a column, whereas during periods of low predation risk (hot and early wet seasons), individual bats left first, before a column of bats formed, 10 to 20 min after the first individuals exited the cave. Our study highlights that large colonies may provide thermoregulatory benefits that could increase individual fitness. However, aggregations also increase predation costs during emergence. Bats form a column when aerial predator attacks are most frequent. Also, bats seem to adjust their emergence timing in response to seasonal changes in predation risk.
DOI: 10.6084/m9.figshare.28238689
title: A new, apterous species of <i>Megaphragma</i> Timberlake (Hymenoptera: Chalcidoidea: Trichogrammatidae)

description: A new species of <i>Megaphragma</i> Timberlake (Hymenoptera: Chalcidoidea: Trichogrammatidae), <i>Megaphragma wolfi</i> Lahey & Polaszek, is described from Costa Rica and the southeastern United States. Both sexes are completely apterous (wingless), representing the first occurrence of this phenomenon in the genus and the first apterous female of the family Trichogrammatidae. Morphological features, and a molecular analysis of two gene sequences (28S rDNA, COI mtDNA), place the new species in the recently established <i>M. polychaetum</i>-group.
DOI: 10.6084/m9.figshare.28238689.v1
title: A new, apterous species of <i>Megaphragma</i> Timberlake (Hymenoptera: Chalcidoidea: Trichogrammatidae)

description: A new species of <i>Megaphragma</i> Timberlake (Hymenoptera: Chalcidoidea: Trichogrammatidae), <i>Megaphragma wolfi</i> Lahey & Polaszek, is described from Costa Rica and the southeastern United States. Both sexes are completely apterous (wingless), representing the first occurrence of this phenomenon in the genus and the first apterous female of the family Trichogrammatidae. Morphological features, and a molecular analysis of two gene sequences (28S rDNA, COI mtDNA), place the new species in the recently established <i>M. polychaetum</i>-group.
DOI: 10.6084/m9.figshare.26661397.v1
title: Genome mining for ribosomally synthesized and post-translationally modified peptides (RiPPs) in <i>Streptomyces</i> bacteria

description: Ribosomally synthesized post-translationally modified peptides (RiPPs) are a novel category of bioactive natural products (NPs). <i>Streptomyces</i> bacteria are a potential source of many bioactive NPs. Limited opportunities are available to characterize all the bioactive NP gene clusters. In this study, 410 sequences of <i>Streptomyces</i> were analyzed for RiPPs through genome mining using the National Center for Biotechnology Information (NCBI), by combining BAGEL and anti-SMASH. A total of 4098 RiPPs were found; including both classified (lanthipeptide, RiPP-like, bacteriocin, LAPs, lassopeptide, thiopeptides) and nonclassified RiPPs. Soil was identified as a rich habitat for RiPPs. These data may offer alternative future remedies for various health issues.
DOI: 10.17866/rd.salford.11323124
title: A Bridge Between Heaven and Earth - Read First

description: This contains details of the items contained within the collection "A Bridge Between Heaven and Earth"
DOI: 10.17866/rd.salford.11323124.v1
title: A Bridge Between Heaven and Earth - Read First

description: This contains details of the items contained within the collection "A Bridge Between Heaven and Earth"
DOI: 10.15468/dl.cbfmsh
title: Occurrence Download

description: A dataset containing 251 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-500.0",
 "OccurrenceStatus is Present",
 "TaxonKey is Lopinga achine (Scopoli, 1763)",
 "Year 1961-1990"
 ]
}

 The dataset includes 251 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003591-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28224960
title: Formation of acrylamide in commercially available plant-based meat alternatives during domestic cooking

description: The formation and occurrence of acrylamide in carbohydrate-rich foods has been extensively studied over the course of the past few decades. However, the emergence of plant-based meat alternatives presents a new challenge in this field. The aim of this study was to evaluate the levels of acrylamide in commercially available plant-based meat alternatives before and after heat treatment. Trace levels of acrylamide were detected in all samples before heat-treatment, while the concentrations increased in 11 samples out of 16 after heat-treatment. The highest concentration of acrylamide increased from 65.7 ± 6.6 µg kg<sup>−1</sup> before to 119 ± 12 µg kg<sup>−1</sup> after heat-treatment. Principal component analysis (PCA) indicated that besides macronutrient composition, the use of additives and processing techniques have a strong influence on acrylamide formation in plant-based meat alternatives. The latter was supported by the analysis of self-made meat alternative models that were prepared using only the base ingredients.
DOI: 10.6084/m9.figshare.28224960.v1
title: Formation of acrylamide in commercially available plant-based meat alternatives during domestic cooking

description: The formation and occurrence of acrylamide in carbohydrate-rich foods has been extensively studied over the course of the past few decades. However, the emergence of plant-based meat alternatives presents a new challenge in this field. The aim of this study was to evaluate the levels of acrylamide in commercially available plant-based meat alternatives before and after heat treatment. Trace levels of acrylamide were detected in all samples before heat-treatment, while the concentrations increased in 11 samples out of 16 after heat-treatment. The highest concentration of acrylamide increased from 65.7 ± 6.6 µg kg<sup>−1</sup> before to 119 ± 12 µg kg<sup>−1</sup> after heat-treatment. Principal component analysis (PCA) indicated that besides macronutrient composition, the use of additives and processing techniques have a strong influence on acrylamide formation in plant-based meat alternatives. The latter was supported by the analysis of self-made meat alternative models that were prepared using only the base ingredients.
DOI: 10.6084/m9.figshare.28224963
title: Tiered intake assessment for propylene glycol in beverages

description: A tiered intake assessment approach is presented and applied to derive estimates of maximum potential global propylene glycol (PG) intake from beverage sources. The US and UK markets served as surrogates for the world and the EU region, respectively, to determine the maximum potential exposure for PG in various subpopulations, including brand-loyal consumers. Conservative intake estimates for PG used in non-alcoholic beverages were calculated for toddlers less than 3 years (y), young children 3-9 y, adolescents 10-17 y, adults 18-64 y, elderly 65-74 y, very elderly 75+ y, based on assumed uses in high beverage consumption markets, leveraging either the 2-day food consumption data from the 2013–2016 US National Health and Nutrition Examination Survey or the 4-day food consumption data from the 2008-2017 UK National Diet and Nutrition Survey Rolling Programme. This study shows that safety of PG in beverages at proposed use levels up to 3,000 mg kg<sup>−1</sup> can be supported for any geography, based not only on a refined budget method approach but also on a refined deterministic approach when applying the proposed safe intake (pADI) of 62.5 mg kg bw<sup>−1 </sup>day<sup>−1</sup>. In all refined assessments, intake estimates across all age groups fell close to or well below the pADI even among high consumers at the 95<sup>th</sup> percentile.
DOI: 10.6084/m9.figshare.28224963.v1
title: Tiered intake assessment for propylene glycol in beverages

description: A tiered intake assessment approach is presented and applied to derive estimates of maximum potential global propylene glycol (PG) intake from beverage sources. The US and UK markets served as surrogates for the world and the EU region, respectively, to determine the maximum potential exposure for PG in various subpopulations, including brand-loyal consumers. Conservative intake estimates for PG used in non-alcoholic beverages were calculated for toddlers less than 3 years (y), young children 3-9 y, adolescents 10-17 y, adults 18-64 y, elderly 65-74 y, very elderly 75+ y, based on assumed uses in high beverage consumption markets, leveraging either the 2-day food consumption data from the 2013–2016 US National Health and Nutrition Examination Survey or the 4-day food consumption data from the 2008-2017 UK National Diet and Nutrition Survey Rolling Programme. This study shows that safety of PG in beverages at proposed use levels up to 3,000 mg kg<sup>−1</sup> can be supported for any geography, based not only on a refined budget method approach but also on a refined deterministic approach when applying the proposed safe intake (pADI) of 62.5 mg kg bw<sup>−1 </sup>day<sup>−1</sup>. In all refined assessments, intake estimates across all age groups fell close to or well below the pADI even among high consumers at the 95<sup>th</sup> percentile.
DOI: 10.6084/m9.figshare.28248427
title: Detection of carob flour in cocoa powder by direct analysis in real time-mass spectrometry (DART-MS)

description: Cocoa is a high value product and therefore a potential target for economic adulteration with less expensive ingredients. Carob flour is less expensive than cocoa powder and is frequently cited as a potential cocoa substitute. While carob has legitimate uses as a cocoa replacement, these characteristics also make it a potential adulterant of cocoa powder. Direct analysis in real time mass spectrometry (DART-MS) is an ambient ionization MS technique that can be used to rapidly interrogate samples. Samples of cocoa powders, carob flours, and mixtures of the two were extracted with buffer and interrogated by DART-MS. The mass spectra were used to develop models to distinguish between cocoa powder and cocoa powder adulterated with carob. A principal component-linear discriminant analysis (PCA-LDA) model was used to discriminate between cocoa powder and cocoa powder amended with 15% carob flour. The accuracy using internal validation was 100%. Using an external validation dataset, the accuracy, precision, and recall were 96.0%, 94.8%, and 97.3%, respectively. These results demonstrate that DART-MS can be used to discriminate between cocoa powder and cocoa powder adulterated with 15% carob.