cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17159339.v1
title: Files S5 and S6. Unfiltered .map and .ped files (777,962 SNPs) for 102 BCHF pairs and 96 MBCDPv2.9 bulls, filename: BCHF102_MBCDP29_HD778 (27.6 and 890.3 Mb, respectively).

description: Bovine congestive heart failure (BCHF) has become increasingly prevalent among feedlot cattle in the Western Great Plains of North America with up to 7% mortality in affected herds. BCHF is an untreatable complex condition involving pulmonary hypertension that culminates in right ventricular failure and death. Genes associated with BCHF in feedlot cattle have not been previously identified. Our aim was to search for genomic regions associated with this disease. A retrospective, matched case-control design with 102 clinical BCHF cases and their unaffected penmates was used in a genome-wide association study. Paired nominal data from approximately 560k filtered single nucleotide polymorphisms (SNPs) were analyzed with McNemar’s test. The most significant genome-wide association was in the arrestin domain-containing 3 protein gene (ARRDC3), followed by the nuclear factor IA gene (NFIA, mid-p-values, 1x10E-8 and 2x10E-7, respectively). Animals with homozygous risk alleles at either gene were approximately 8-fold more likely to have BCHF than their matched penmates without those risk alleles (CI95 = 3-17). Animals with homozygous risk alleles at both genes were 28-fold more likely to have BCHF than all others (p-value = 1x10E-7, CI95 = 4-206). A linked missense variant in ARRDC3 (C182Y) represents a potential functional variant since C182 is conserved among all other jawed vertebrate species observed. A DNA test with two markers showed 29% of 273 BCHF cases had homozygous risk alleles in both genes, compared to 2.5% in 198 similar unaffected feedlot cattle. This DNA test may be useful for identifying feedlot animals with the highest risk for BCHF in the environments described here. Although pathogenic roles for ARRDC3 and NFIA variants associated with BCHF are unknown, their discovery facilitates classifying animals by genetic risk and allows cattle producers to make informed decisions for selective breeding and animal health management.
DOI: 10.25390/caryinstitute.10040666
title: Data associated with: Aedes albopictus Body Size Differs Across Neighborhoods With Varying Infrastructural Abandonment

description: These are the data files associated with Katz, G., Leisnham, P. T., & LaDeau, S. L. (2019). Aedes albopictus body size differs across neighborhoods with varying infrastructural abandonment. Journal of Medical Entomology, tjz170. <br><br><b>Abstract</b>Mosquitoes pose an increasing risk in urban landscapes, where spatial heterogeneity in juvenile habitat can influence fine-scale differences in mosquito density and biting activity. We examine how differences in juvenile mosquito habitat along a spectrum of urban infrastructure abandonment can influence the adult body size of the invasive tiger mosquito, Aedes albopictus (Skuse) (Diptera: Culicidae). Adult Ae. albopictus were collected across 3 yr (2015-2017) from residential blocks in Baltimore, MD, that varied in abandonment level, defined by the proportion of houses with boarded-up doors. We show that female Ae. albopictus collected from sites with higher abandonment were significantly larger than those collected from higher income, low abandonment blocks. Heterogeneity in mosquito body size, including wing length, has been shown to reflect differences in important traits, including longevity and vector competence. The present work demonstrates that heterogeneity in female size may reflect juvenile habitat variability across the spatial scales most relevant to adult Aedes dispersal and human exposure risk in urban landscapes. Previous work has shown that failure to manage abandonment and waste issues in impoverished neighborhoods supports greater mosquito production, and this study suggests that mosquitoes in these same neighborhoods could live longer, produce more eggs, and have different vector potential.<br><br>The metadata file contains metadata, methods, and data use policy.<br><br>
DOI: 10.25390/caryinstitute.10040666.v2
title: Data associated with: Aedes albopictus Body Size Differs Across Neighborhoods With Varying Infrastructural Abandonment

description: These are the data files associated with Katz, G., Leisnham, P. T., & LaDeau, S. L. (2019). Aedes albopictus body size differs across neighborhoods with varying infrastructural abandonment. Journal of Medical Entomology, tjz170. <br><br><b>Abstract</b>Mosquitoes pose an increasing risk in urban landscapes, where spatial heterogeneity in juvenile habitat can influence fine-scale differences in mosquito density and biting activity. We examine how differences in juvenile mosquito habitat along a spectrum of urban infrastructure abandonment can influence the adult body size of the invasive tiger mosquito, Aedes albopictus (Skuse) (Diptera: Culicidae). Adult Ae. albopictus were collected across 3 yr (2015-2017) from residential blocks in Baltimore, MD, that varied in abandonment level, defined by the proportion of houses with boarded-up doors. We show that female Ae. albopictus collected from sites with higher abandonment were significantly larger than those collected from higher income, low abandonment blocks. Heterogeneity in mosquito body size, including wing length, has been shown to reflect differences in important traits, including longevity and vector competence. The present work demonstrates that heterogeneity in female size may reflect juvenile habitat variability across the spatial scales most relevant to adult Aedes dispersal and human exposure risk in urban landscapes. Previous work has shown that failure to manage abandonment and waste issues in impoverished neighborhoods supports greater mosquito production, and this study suggests that mosquitoes in these same neighborhoods could live longer, produce more eggs, and have different vector potential.<br><br>The metadata file contains metadata, methods, and data use policy.<br><br>
DOI: 10.25390/caryinstitute.10040666.v1
title: Aedes albopictus Body Size Differs Across Neighborhoods With Varying Infrastructural Abandonment

description: These are the data files associated with Katz, G., Leisnham, P. T., & LaDeau, S. L. (2019). Aedes albopictus body size differs across neighborhoods with varying infrastructural abandonment. Journal of Medical Entomology, tjz170. <br><br><b>Abstract</b>Mosquitoes pose an increasing risk in urban landscapes, where spatial heterogeneity in juvenile habitat can influence fine-scale differences in mosquito density and biting activity. We examine how differences in juvenile mosquito habitat along a spectrum of urban infrastructure abandonment can influence the adult body size of the invasive tiger mosquito, Aedes albopictus (Skuse) (Diptera: Culicidae). Adult Ae. albopictus were collected across 3 yr (2015-2017) from residential blocks in Baltimore, MD, that varied in abandonment level, defined by the proportion of houses with boarded-up doors. We show that female Ae. albopictus collected from sites with higher abandonment were significantly larger than those collected from higher income, low abandonment blocks. Heterogeneity in mosquito body size, including wing length, has been shown to reflect differences in important traits, including longevity and vector competence. The present work demonstrates that heterogeneity in female size may reflect juvenile habitat variability across the spatial scales most relevant to adult Aedes dispersal and human exposure risk in urban landscapes. Previous work has shown that failure to manage abandonment and waste issues in impoverished neighborhoods supports greater mosquito production, and this study suggests that mosquitoes in these same neighborhoods could live longer, produce more eggs, and have different vector potential.<br><br>The metadata file contains metadata, methods, and data use policy.<br><br>
DOI: 10.5063/f1dr2swp
title: Shedd et al. (2022) - Evolutionary Applications - Reduced relative fitness in hatchery-origin Pink Salmon in two streams in Prince William Sound, Alaska in 2013-2016

description: Previous studies generally report that hatchery-origin Pacific Salmon (Oncorhynchus spp.) have lower relative reproductive success (RRS) than their natural-origin counterparts. We estimated the RRS of Pink Salmon (O. gorbuscha) in Prince William Sound, Alaska (PWS) using incomplete pedigrees. In contrast to other RRS studies, Pink Salmon have a short freshwater life history, freshwater habitats in PWS are largely unaltered by development, and sampling was conducted without the aid of dams or weirs resulting in incomplete sampling of spawning individuals. Pink Salmon released from large-scale hatchery programs in PWS have interacted with wild populations for more than 15 generations. Hatchery populations were established from PWS populations but have subsequently been managed as separate broodstocks. Gene flow is primarily directional, from hatchery strays to wild populations. We used genetic-based parentage analysis to estimate the RRS of a single generation of stray hatchery-origin Pink Salmon in two streams, and across the odd- and even-year lineages. Despite incomplete sampling, we assigned 1,745 offspring to at least one parent. Reproductive success (RS), measured as sampled adult offspring that returned to their natal stream, was significantly lower for hatchery- versus natural-origin parents in both lineages, with RRS ranging from 0.03 to 0.47 for females and 0.05 to 0.86 for males. Generalized linear modeling for the even-year lineage indicated that RRS was lower for hatchery-origin fish, ranging from 0.42 to 0.60, after accounting for sample date (run timing), sample location within the stream, and fish length. Our results strongly suggest that hatchery-origin strays have lower fitness in the wild. The consequences of reduced RRS on wild productivity depend on whether the mechanisms underlying reduced RRS are environmentally driven, and likely ephemeral, or genetically driven, and likely persistent across generations.
DOI: 10.6084/m9.figshare.17161190
title: Files S7 and S8. Filtered .map and .ped files (604,746 SNPs) for 102 BCHF pairs and 96 MBCDPv2.9 bulls, filename: BCHF102_MBCDP29_HD778Filtered (21.5 and 692.1 Mb, respectively).

description: Bovine congestive heart failure (BCHF) has become increasingly prevalent among feedlot cattle in the Western Great Plains of North America with up to 7% mortality in affected herds. BCHF is an untreatable complex condition involving pulmonary hypertension that culminates in right ventricular failure and death. Genes associated with BCHF in feedlot cattle have not been previously identified. Our aim was to search for genomic regions associated with this disease. A retrospective, matched case-control design with 102 clinical BCHF cases and their unaffected penmates was used in a genome-wide association study. Paired nominal data from approximately 560k filtered single nucleotide polymorphisms (SNPs) were analyzed with McNemar’s test. The most significant genome-wide association was in the arrestin domain-containing 3 protein gene (ARRDC3), followed by the nuclear factor IA gene (NFIA, mid-p-values, 1x10E-8 and 2x10E-7, respectively). Animals with homozygous risk alleles at either gene were approximately 8-fold more likely to have BCHF than their matched penmates without those risk alleles (CI95 = 3-17). Animals with homozygous risk alleles at both genes were 28-fold more likely to have BCHF than all others (p-value = 1x10E-7, CI95 = 4-206). A linked missense variant in ARRDC3 (C182Y) represents a potential functional variant since C182 is conserved among all other jawed vertebrate species observed. A DNA test with two markers showed 29% of 273 BCHF cases had homozygous risk alleles in both genes, compared to 2.5% in 198 similar unaffected feedlot cattle. This DNA test may be useful for identifying feedlot animals with the highest risk for BCHF in the environments described here. Although pathogenic roles for ARRDC3 and NFIA variants associated with BCHF are unknown, their discovery facilitates classifying animals by genetic risk and allows cattle producers to make informed decisions for selective breeding and animal health management.
DOI: 10.6084/m9.figshare.17161190.v1
title: Files S7 and S8. Filtered .map and .ped files (604,746 SNPs) for 102 BCHF pairs and 96 MBCDPv2.9 bulls, filename: BCHF102_MBCDP29_HD778Filtered (21.5 and 692.1 Mb, respectively).

description: Bovine congestive heart failure (BCHF) has become increasingly prevalent among feedlot cattle in the Western Great Plains of North America with up to 7% mortality in affected herds. BCHF is an untreatable complex condition involving pulmonary hypertension that culminates in right ventricular failure and death. Genes associated with BCHF in feedlot cattle have not been previously identified. Our aim was to search for genomic regions associated with this disease. A retrospective, matched case-control design with 102 clinical BCHF cases and their unaffected penmates was used in a genome-wide association study. Paired nominal data from approximately 560k filtered single nucleotide polymorphisms (SNPs) were analyzed with McNemar’s test. The most significant genome-wide association was in the arrestin domain-containing 3 protein gene (ARRDC3), followed by the nuclear factor IA gene (NFIA, mid-p-values, 1x10E-8 and 2x10E-7, respectively). Animals with homozygous risk alleles at either gene were approximately 8-fold more likely to have BCHF than their matched penmates without those risk alleles (CI95 = 3-17). Animals with homozygous risk alleles at both genes were 28-fold more likely to have BCHF than all others (p-value = 1x10E-7, CI95 = 4-206). A linked missense variant in ARRDC3 (C182Y) represents a potential functional variant since C182 is conserved among all other jawed vertebrate species observed. A DNA test with two markers showed 29% of 273 BCHF cases had homozygous risk alleles in both genes, compared to 2.5% in 198 similar unaffected feedlot cattle. This DNA test may be useful for identifying feedlot animals with the highest risk for BCHF in the environments described here. Although pathogenic roles for ARRDC3 and NFIA variants associated with BCHF are unknown, their discovery facilitates classifying animals by genetic risk and allows cattle producers to make informed decisions for selective breeding and animal health management.
DOI: 10.5281/zenodo.5969896
title: The Data Set for the Publication "Laboratory Testing of Small Scale Solar Facade Module with Phase Change Material and Adjustable Insulation Layer"

description: In the scope of the ambitious EU goals of carbon neutrality in 2050, building energy efficiency is one of the crucial segments. To ensure a faster energy transition process, innovations are needed at various built environment-related sectors - starting from building components up to urban level energy management advancements. Phase change material (PCM) enriched building components allow to shift the existing paradigm - to make a switch from the static building components to dynamic ones able to take an active part in building energy balance by ensuring energy storage in the building thermal envelope. The data set presented here supports the paper "Laboratory Testing of Small Scale Solar Facade Module with Phase Change Material and Adjustable Insulation Layer". The design of the façade module, experimental setup, used equipment, the plan of the experiment, and obtained results are described in the paper. The provided data set provides heat-flux and average temperature (in PCM) measurements.
description: This study has been supported by Fundamental and Applied Research project "Smart building EnVElope with solaR Energy STorage (EVEREST)", project No. lzp-2019/1-0363, funded by the Latvian Council of Science.
DOI: 10.5281/zenodo.5969895
title: The Data Set for the Publication "Laboratory Testing of Small Scale Solar Facade Module with Phase Change Material and Adjustable Insulation Layer"

description: In the scope of the ambitious EU goals of carbon neutrality in 2050, building energy efficiency is one of the crucial segments. To ensure a faster energy transition process, innovations are needed at various built environment-related sectors - starting from building components up to urban level energy management advancements. Phase change material (PCM) enriched building components allow to shift the existing paradigm - to make a switch from the static building components to dynamic ones able to take an active part in building energy balance by ensuring energy storage in the building thermal envelope. The data set presented here supports the paper "Laboratory Testing of Small Scale Solar Facade Module with Phase Change Material and Adjustable Insulation Layer". The design of the façade module, experimental setup, used equipment, the plan of the experiment, and obtained results are described in the paper. The provided data set provides heat-flux and average temperature (in PCM) measurements.
description: This study has been supported by Fundamental and Applied Research project "Smart building EnVElope with solaR Energy STorage (EVEREST)", project No. lzp-2019/1-0363, funded by the Latvian Council of Science.
DOI: 10.17632/4s26ky2fh8.1
title: LDHU3_08.0620

description: cyclopropane-fatty-acyl-phospholipid synthase
Leishmania donovani (HU3 strain)
DOI: 10.17632/xg2f3gp2t5.1
title: LDHU3_08.0580

description: ribose-phosphate pyrophosphokinase
Leishmania donovani (HU3 strain)
DOI: 10.17632/hpszm7k48y.1
title: LDHU3_08.0540

description: small ubiquitin-like modifier (SUMO)
Leishmania donovani (HU3 strain)
DOI: 10.17632/ww3p5ptr5t.1
title: Terbinafine Onychomycosis Supplementary Data

description: Supplementary Figure 1 and Supplementary Table 1 for "Insights into the “Fear Factor” Regarding Terbinafine-Associated Hepatoxicity in an Assessment of Online Information"
DOI: 10.5281/zenodo.5974932
title: Benchmark dataset for preprint: "EDEN: A high-performance, general-purpose, NeuroML-based neural simulator"

description: The benchmark files and scripts to reproduce the figures of the preprint "EDEN: A high-performance, general-purpose, NeuroML-based neural simulator" ( https://arxiv.org/abs/2106.06752 ) The benchmarks require a computer running Linux with Docker installed. Unpack the paper_experiments.zip file and follow the instructions in the README.md file to run the benchmarks and reproduce the figures.
DOI: 10.5281/zenodo.5526323
title: Benchmark dataset for preprint: "EDEN: A high-performance, general-purpose, NeuroML-based neural simulator"

description: The benchmark files and scripts to reproduce the figures of the preprint "EDEN: A high-performance, general-purpose, NeuroML-based neural simulator" ( https://arxiv.org/abs/2106.06752 ) The benchmarks require a computer running Linux with Docker installed. Unpack the paper_experiments.zip file and follow the instructions in the README.md file to run the benchmarks and reproduce the figures.
DOI: 10.3886/e160361
title: Fisher & Rehkopf - EITC as Supplementary Food Benefits and Savings for Durables

description: The data and programs accompany the article titled "The Earned Income Tax Credit as Supplementary Food Benefits and Savings for Durable Goods," that appeared in Contemporary Economic Policy. It is co-authored with David Rehkopf.<br><br>The Earned Income Tax Credit (EITC) transferred more than $67 billion to taxpayers in 2016.We estimate changes in spending that occur following EITC disbursement. We make three key advances in identifying the effect: using estimated EITC dollar benefits to differentiate the impact of low from high benefits; estimating the impact by liquid assets; and, employing a triple difference model around the 1993 expansion and a separate triple-difference model over the number of children. We find that the EITC acts as supplementary SNAP benefits for those with small EITC benefits, while those with larger benefits increase spending on durables, particularly automobiles.
DOI: 10.3886/e160361v1
title: Fisher & Rehkopf - EITC as Supplementary Food Benefits and Savings for Durables

description: The data and programs accompany the article titled "The Earned Income Tax Credit as Supplementary Food Benefits and Savings for Durable Goods," that appeared in Contemporary Economic Policy. It is co-authored with David Rehkopf.<br><br>The Earned Income Tax Credit (EITC) transferred more than $67 billion to taxpayers in 2016.We estimate changes in spending that occur following EITC disbursement. We make three key advances in identifying the effect: using estimated EITC dollar benefits to differentiate the impact of low from high benefits; estimating the impact by liquid assets; and, employing a triple difference model around the 1993 expansion and a separate triple-difference model over the number of children. We find that the EITC acts as supplementary SNAP benefits for those with small EITC benefits, while those with larger benefits increase spending on durables, particularly automobiles.
DOI: 10.6084/m9.figshare.19106747
title: Wadi Qattafi Mapping Data

description: This is the mapping output of a drone survey in the eastern Badia region of Jordan.
DOI: 10.5066/p9qgmzq2
title: Main channel river water temperature collected along the East Branch, West Branch, and mainstem Delaware River down to Lordville near Handcock, NY, USA in summer 2021

description: The Upper Delaware River is a unique example of an aquatic system where summer river temperature is actively managed for ecological purposes. River temperature at the mainstem Delaware River at Lordville, NY gage (USGS 01427207) is targeted to remain below 25 degrees C, with warm events potentially mitigated via directed upstream reservoir releases, a process guided by predictive tools. These directed releases currently occur at the Cannonsville Dam on the West Branch, though the temperature criteria at the Lordville gage is also influenced by releases from the Pepacton Dam on the east branch. To increase the spatial resolution of summer river temperature data available for understanding river temperature processes and informing predictions, 40 Onset Tidbit water temperature loggers (models MX2203 and v2 running at 15 min collection intervals) were attached to masonry bricks and deployed temporarily along the riverbed along the East Branch, West Branch, and mainstem Delaware River down to the Lordville gage. The common deployment period for these temperature loggers was 7/23/21 to 8/29/21, and due in part to several high flow events over that period, 26 loggers were ultimately recovered with data. There were three consecutive days (8/10 to 8/12/21) of thermal mitigation dam releases during the logger deployment period. While most of the recovered temperature loggers were relatively clean of sediments when found, four sites showed accumulation of alluvial fines over the loggers which may have impacted recorded river water temperatures, as listed in the read.me file on this root page. Potential deposition of sediments on the temperature loggers at other points over this record is unknown, though several turbid river flows did occur during the period. This public data release contains raw instrument export files (.csv format) and 'processed' temperature data. River temperature data in the 'Combined_Temperature_Data.csv' file have been trimmed to individual logger deployment times, the time zone may have been adjusted to UTC-05:00, and all records were resampled at a common 15-min interval; but have otherwise not been manipulated from the raw data. The Tidbit temperature loggers were all newly purchased when deployed and were assumed therefore to be calibrated and operating at the manufacturers reported specifications (accuracy +/- 0.2 degrees C, resolution 0.01 degrees C).
DOI: 10.5517/ccdc.csd.cc28wpc7
title: CCDC 2111979: Experimental Crystal Structure Determination

description: Related Article: Tian-Tian Huang, Zhao-Xuan Li, Xin-Nan Shi, Qi Yue, En-Qing Gao|2022|J.Solid State Chem.|308|122894|doi:10.1016/j.jssc.2022.122894