cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/pabf7f
title: Multilocus phylogeny and taxonomy of East Asian voles Alexandromys (Rodentia, Arvicolinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lissovsky, Andrey A., Petrova, Tatyana V., Yatsentyuk, Svetlana P., Golenishchev, Fedor N., Putincev, Nikolay I., Kartavtseva, Irina V., Sheremetyeva, Irina N., Abramson, Natalia I. (2017): Multilocus phylogeny and taxonomy of East Asian voles Alexandromys (Rodentia, Arvicolinae). Zoologica Scripta 47 (1): 1-12, DOI: 10.1111/zsc.12261, URL: https://doi.org/10.1111/zsc.12261
DOI: 10.15468/mpf4ay
title: A new species of Dasypogon (Diptera: Asilidae) from Central Europe

description: This dataset contains the digitized treatments in Plazi based on the original journal article Szczepański, Wojciech T. (2023): A new species of Dasypogon (Diptera: Asilidae) from Central Europe. Zootaxa 5230 (3): 367-380, DOI: 10.11646/zootaxa.5230.3.6, URL: http://dx.doi.org/10.11646/zootaxa.5230.3.6AbstractDasypogon is a widely distributed Palearctic genus. This contribution reviews the species from Central Europe. Two species are identified, including one new species— Dasypogon diabolicus sp. nov. An identification key of the Central European species and descriptions of the male and female of both species are provided along with illustrations of the habitus and male and female terminalia. An updated map with species distributions is presented, and a new corrected list of synonyms of D. diadema is proposed. The following new synonymy is established: Leptarthrus brevirostris (Meigen, 1804) = Dasypogon caudatus Bigot, 1881 syn. nov.
DOI: 10.6084/m9.figshare.30949115
title: Big Data Multicentre Machine Learning for Predicting Lymph Node Metastasis in cN0 T1a Papillary Thyroid Carcinoma

description: Big Data Multicentre Machine Learning for Predicting Lymph Node Metastasis in cN0 T1a Papillary Thyroid Carcinoma
DOI: 10.6084/m9.figshare.30949115.v1
title: Big Data Multicentre Machine Learning for Predicting Lymph Node Metastasis in cN0 T1a Papillary Thyroid Carcinoma

description: Big Data Multicentre Machine Learning for Predicting Lymph Node Metastasis in cN0 T1a Papillary Thyroid Carcinoma
DOI: 10.15468/k37tbv
title: New genera and species of Paraboloponina (Hemiptera: Cicadellidae: Drabescini) from Indonesia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lu, Lin, Zhang, Yalin (2023): New genera and species of Paraboloponina (Hemiptera: Cicadellidae: Drabescini) from Indonesia. Zootaxa 5244 (6): 588-594, DOI: 10.11646/zootaxa.5244.6.4, URL: http://dx.doi.org/10.11646/zootaxa.5244.6.4AbstractGuineapona monolophos gen. & sp. nov. and Canopyana apicospina sp. nov. are described from Indonesia. These two leafhopper genera are placed in the subtribe Paraboloponina, based on the elongate antenna, placement of antennal pits near the upper corners of the eyes and crown with transverse striations or carinae on the anterior margin.
DOI: 10.15468/tve5pu
title: Russula (Basidiomycota, Russulales, Russulaceae) subsection Roseinae “ down under ”

description: This dataset contains the digitized treatments in Plazi based on the original journal article Egon, Bart Buyck, Jerry, Egon Horak, Cooper, Jerry A., Song, Yu (2024): Russula (Basidiomycota, Russulales, Russulaceae) subsection Roseinae “ down under ”. Cryptogamie, Mycologie 20 (9): 101-126, DOI: 10.5252/cryptogamie-mycolo-gie2024v45a9, URL: https://sciencepress.mnhn.fr/sites/default/files/articles/pdf/mycologie2024v45a9.pdfABSTRACTThe present contribution discusses species of Russula subsection Roseinae Singer ex Sarnari from the southern hemisphere. Russula incrustata Buyck, sp. nov. and R. koniamboensis Buyck, sp. nov. are described from New Caledonia, R. purpureotincta R.F.R. McNabb from New Zealand is redescribed based on new collections and two sequestrate species, R. albobrunnea T.Lebel from Australia and R. kermesina (R.F.R. McNabb) T.Lebel from New Zealand are shown to be the first known sequestrate taxa in Roseinae. The systematic placement and originality of these southern taxa is discussed. The definition of subsection Roseinae is emended.
DOI: 10.15468/t3xu44
title: Forty years of Box Turtle husbandry

description: This dataset contains the digitized treatments in Plazi based on the original journal article Boonman, John (2019): Forty years of Box Turtle husbandry. Pod @ rcis 10 (1): 7-16, DOI: 10.5281/zenodo.4973267, URL: http://dx.doi.org/10.5281/zenodo.4973267
DOI: 10.15468/bg63jw
title: Assessment of the value of grasslands in OlszÓwka (Mszana Dolna Commune, Southern Poland)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Traczyk, Monika, Kucab, Anna (2024): Assessment of the value of grasslands in OlszÓwka (Mszana Dolna Commune, Southern Poland). Annales Universitatis Paedagogicae Cracoviensis Studia Naturae 9: 59-82, DOI: 10.24917/25438832.9.4, URL: https://doi.org/10.24917/25438832.9.4AbstractThe botanical composition of meadows and pastures and their value in use should determine the activities undertaken on grasslands in order to maximise their yields. The aim of the study was to analyse the floristic composition of meadows and pastures in the area of Olszówka village (Southern Poland), their characteristics and determination of the value in use and agricultural suitability. In the meadows and pastures, 50 plots, each with an area of 25 m 2, were marked out and floristic lists were made on them according to the Klapp method. In the analysed area, the presence of five groups of similar plots was determined: I – pasture with Lolium perenne, II – meadow with Dactylis glomerata, III – meadow/pasture with Phleum pratense and Poa pratensis, IV – meadow with Arrhenatherum elatius, V – weeded meadow/pasture with Plantago lanceolata. Usage studies have shown that most of the plots have medium and good forage values. In order to improve the quality of meadows and pastures, undesirable species should be limited and appropriately selected care treatments should be intensified.
DOI: 10.15468/fubuvk
title: New species and records of the genus Antocha Osten Sacken (Diptera, Limoniidae) from Tibet, China with a key to species in Qinghai-Tibet region

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lv, Hanhuiying, Sun, Juan, Wang, Ning, Yang, Ding, Zhang, Xiao (2023): New species and records of the genus Antocha Osten Sacken (Diptera, Limoniidae) from Tibet, China with a key to species in Qinghai-Tibet region. ZooKeys 1156: 53-69, DOI: http://dx.doi.org/10.3897/zookeys.1156.86786, URL: http://dx.doi.org/10.3897/zookeys.1156.86786
DOI: 10.15468/j7b4ad
title: The larvae of caddisfly species (Insecta, Trichoptera) in northern Thai streams and their relationships to environmental variables

description: This dataset contains the digitized treatments in Plazi based on the original journal article Seetapan, Kriengkrai, Prommi, Taeng On (2022): The larvae of caddisfly species (Insecta, Trichoptera) in northern Thai streams and their relationships to environmental variables. Zootaxa 5222 (4): 301-324, DOI: 10.11646/zootaxa.5222.4.1AbstractThere have been few systematic studies on Trichoptera larvae in Thailand. The larval stages of the endemic species remain mostly unknown. Continued work on describing the larval stages of species will improve the precision of water quality monitoring metrics and enable ecological studies of species. This paper describes the unknown larvae of Hydropsyche pallipenne Banks 1938 and Hydropsyche askalaphos Malicky & Chantaramongkol 2000, with their identities deduced from the fact that both the larvae described here and identifiable adult specimens were sampled at the same location. Also, the effects of environmental variables on the distribution of caddisfly larvae in northern Thai streams were investigated. In total, 41 taxa from seven streams were identified, representing twenty-four genera and thirteen families. The Hydropsychidae were the most numerous family collected, accounting for 1,487 specimens (54%). Trichopteran abundance (for Triaenodes sp., Marilia sumatrana, Amphipsyche meridiana, Hydropsyche askalaphos, Leptocerus sp., Ganonema sp., Chimarra cf. akkaorum, Cheumatopsyche cf. dubitans, Macrostemum sp., and Leptocerus sp.) is influenced by environmental factors such as water temperature, dissolved oxygen, total dissolved solids, ammonia nitrogen, nitrate nitrogen, and pH. Because of their significant responses to environmental fluctuations, the caddisfly assemblage proved useful in identifying variations in water quality conditions in northern Thai streams.
DOI: 10.17882/46219
title: CORA, Coriolis Ocean Dataset for Reanalysis

description: The COriolis Ocean Dataset for Reanalysis (hereafter "CORA") product is a global dataset of in situ temperature and salinity measurements. The CORA observations comes from many different sources collected by Coriolis data centre in collaboration with the In Situ Thematic Centre of the Copernicus Marine Service (CMEMS INSTAC).  The observation integrated in the CORA product have been acquired both by autonomous platforms (Argo profilers, fixed moorings , gliders , drifters, sea mammals) , research or opportunity vessels (CTDs, XBTs, ferrybox). 
From the near real time CMEMS In Situ Thematic Centre product validated on a daily and weekly basis for forecasting purposes, a scientifically validated product is created. It s a "reference product" updated on a yearly basis since 2007. This product has been controlled using an objective analysis (statistical tests) method and a visual quality control (QC). This QC procedure has been developed with the main objective to improve the quality of the dataset to the level required by the climate application and the physical ocean re-analysis activities. It provides T and S weekly gridded fields and individual profiles both on their original level with QC flags and interpolated level. The measured parameters, depending on the data source, are : temperature, salinity. The reference level of measurements is immersion (in meters) or pressure (in decibars). 
CORA contains historical profiles extracted from the EN.4 global T&S dataset, World Ocean Atlas, SeaDataNet, ICES and other data aggregators .
The last version of the CORA product are also available freely from the Copernicus WEB site :  
 - Global Ocean- CORA- In-situ Observations Yearly Delivery in Delayed Mode
 - Global Ocean- Delayed Mode gridded CORA- In-situ Observations objective analysis in Delayed Mode
DOI: 10.17882/47248
title: REPHY dataset - French Observation and Monitoring program for Phytoplankton and Hydrology in coastal waters. Metropolitan data

description: This REPHY dataset includes long-term time series on marine phytoplankton and physico-chemical measures, since 1987, along the whole French metropolitan coast. Some of these data are shared with those of the following regional networks: SRN (Hauts-de-France), RHLN (Normandy), ARCHYD (Arcachon), RSLHYD (Mediterranean lagoons). REPHY dataset from overseas departments (Martinique, Guadeloupe and French Guiana in West Atlantic waters; Reunion Island and Mayotte in Indian Ocean) will be available later. Phytoplankton data essentially cover microscopic taxonomic identifications and counts, but also pigments measures and flux cytometry measures in few regions. Physico-chemical measures include temperature, salinity, turbidity, dissolved oxygen, nutrients and chlorophylle a. The whole dataset is available, but is also divided into regions: North Sea + Channel + Atlantic, Mediterranean. For each of these two regional datasets, one includes only phytoplankton counts (PHYTO), the other (HYDRO) includes physico-chemical measures, pigments and flux cytometry measures.
DOI: 10.17882/52231
title: Annotation of the genome assembly (version 2) of the microalga Tisochrysis lutea

description: We recently published the first draft genome of T. lutea obtained with the Illumina short-read technology. While this technology has a very low sequencing error rates, the assemblers are known to misassemble the long repeated sequences, resulting into the fragmentation of the genome assembly. The genome of T. lutea was re-sequenced with the long-read technology Pacific Bioscience. Indeed, long-read assemblers show efficiency to resolve the assembly of long repeated elements such as TEs. However, this technology have to date a high sequencing error rates and its combination with short-read Illumina data is became a common method to overcome this error rate. A de novo genome assembly was perform from the long-reads and was improved with Illumina short-read data, used in the first genome assembly version.
The de novo genome of T. lutea is composed of 193 contigs and has a size of 82 Mb. A gain of around 30 Mb was obtained (+34%), compared to the previous genome assembly, having a size of 54 Mb and composed of 7,659 contigs. The size of the coding regions has fewly increased between the both genome versions. While the de novo genome assembly encodes for ~16,000 genes, corresponding to a coding region length of 28 Mb, the previous gene proportion of the draft genome version was of 25 Mb. This suggest that the new assembled regions are mostly repeated elements. This new genome version is by far away more accurate than the previous one and was suitable to properly detect and annotate the TE content.
To identify potential autonomous TEs, we designed a pipeline named PiRATE (Pipeline to Retrieve and Annotate TEs) and conducted an accurate TE annotation in a de novo genome of T. lutea. We established that its genome is composed of 15.9% and 4.9% of Class I and Class II TEs respectively. Among them 3.8% and 15.95% correspond to potentially autonomous and non-autonomous TEs respectively.
DOI: 10.17882/58134
title: EC1, mooring time-series since 1996

description: The East Sea Current Measurement (EC1) is a subsurface mooring located in the deep channel of the Ulleung Interplain Gap (UIG) in the southwestern East Sea (Japan Sea), connecting the Japan Basin (JB) and Ulleung Basin (UB). The EC1 was first deployed at a depth of 2300 m in 1996 and has been operated to provide long time-series of currents and water properties. The UIG, a unique conduit for deep water exchange between JB and UB, is approximately 75 km wide and more than 2000 m deep, with a slight broadening towards the UB in the southwestern East Sea. Single point current-meters and other sensors are attached at 400 m, 1400 m, 2200 m, and other depths of the EC1 mooring. An upward-looking acoustic Doppler current profiler is often mounted between 100 and 500 m. In 2017, dissolved oxygen sensors were added at 1400 and 2250 m. The sampling intervals of the sensors are less than an hour. The data are quality controlled and quality assured before provision to the community via OceanSITES and SEANOE.
DOI: 10.15468/evssyc
title: From surface to caves: new species of Diploexochus Brandt, 1833 (Oniscidea, Armadillidae) from Colombia, with the description of the first troglobitic species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Borja-Arrieta, Ricardo, López-Orozco, Carlos Mario, Carpio-Díaz, Yesenia M., Gutierrez-Estrada, Miguel, Campos-Filho, Ivanklin Soares, Navas-S., Gabriel R., Bichuette, Maria Elina (2025): From surface to caves: new species of Diploexochus Brandt, 1833 (Oniscidea, Armadillidae) from Colombia, with the description of the first troglobitic species. ZooKeys 1223: 263-288, DOI: 10.3897/zookeys.1223.133267AbstractTwo new species of Diploexochus are described, Diploexochus cacique sp. nov. from Cerro Bañaderos in Hatonuevo, La Guajira, and Diploexochus troglobius sp. nov. from Roca Madre Cave, Toluviejo, Sucre, both from the Tropical Dry Forest (TDF) areas of the Colombian Caribbean. The latter represent the first troglobitic species of the genus. Moreover, based on specimens from Sierra Nevada de Santa Marta, Magdalena (type locality), Venezillo brevispinis is placed into Diploexochus and an identification key for all species of the genus is given. The present work describes the first troglobitic species of the genus, and expand the knowledge of its distribution in northern South America.
DOI: 10.17882/73082
title: Global tidal mixing maps

description: This dataset comprises two netcdf files.
The first file contains the six global two-dimensional maps necessary to implement the tidal mixing parameterization presented in de Lavergne et al. (2020). Four power fields (E_wwi, E_sho, E_cri and E_hil) represent depth-integrated internal tide energy dissipation, with units of Watts per square meter. Each power field corresponds to a specific dissipative process and associated vertical structure of turbulence production. The two remaining fields, H_cri and H_bot, are decay heights (with units of meters) that enter the vertical structures of the E_cri and E_hil components, respectively.
The second file contains three-dimensional fields of turbulence production (with units of Watts per kilogram) obtained by application of the parameterization to the WOCE global hydrographic climatology. The file includes the total turbulence production (epsilon_tid), its four components (epsilon_wwi, epsilon_sho, epsilon_cri, epsilon_hil), and the underlying hydrographic fields, as a function of longitude, latitude and depth.
All maps have a horizontal resolution of 0.5º. Detailed documentation of the parameterization can be found in the following publication: de Lavergne, C., Vic, C., Madec, G., Roquet, F., Waterhouse, A.F., Whalen, C.B., Cuypers, Y., Bouruet-Aubertot, P., Ferron, B., Hibiya, T. A parameterization of local and remote tidal mixing. Journal of Advances in Modeling Earth Systems, 12, e2020MS002065 (2020). https://doi.org/10.1029/2020MS002065
DOI: 10.17882/74354
title: New network of virtual altimetry stations for measuring sea level along the world coastlines

description: Until recently, classical radar altimetry could not provide reliable sea level data  within 10 km to the coast. However dedicated reprocessing of radar waveform  together with geophysical corrections adapted for the coastal regions now allows  to fill this gap at a large number of coastal sites. In the context of the Climate Change Initiative Sea Level project of the European Space Agency, we have recently performed a complete reprocessing of high resolution (20 Hz, i.e., 350m)  along-track altimetry data of the Jason-1, Jason-2 and Jason-3 missions over  January 2002 to June 2021 along the coastal zones of Northeast Atlantic,  Mediterranean Sea, whole African continent, North Indian Ocean, Southeast Asia,  Australia and North and South America. This reprocessing has provided valid sea  level data in the 0-20 km band from the coast. More than 1000 altimetry-based virtual coastal stations have been selected and sea level anomalies time series  together with associated coastal sea level trends have been computed over the study time span. In the coastal regions devoid from tide gauges  (e.g., African coastlines), these virtual stations offer a unique tool for estimating  sea level change close to the coast (typically up to 3 km to the coast but in many  instances up to 1 km or even closer). Results show that at most of the virtual  stations, the rate of sea level rise at the coast is similar to the rate offshore (15 km away from the coast). However, at some stations, the sea level rate in the last 3-4 km to the coast is either faster or slower than offshore.
DOI: 10.17882/75345
title: The Malina oceanographic expedition: How do changes in ice cover, permafrost and UV radiation impact biodiversity and biogeochemical fluxes in the Arctic Ocean?

description: The MALINA oceanographic campaign was conducted during summer 2009 to investigate the carbon stocks and the processes controlling the carbon fluxes in the Mackenzie River estuary and the Beaufort Sea. During the campaign, an extensive suite of physical, chemical and biological variables was measured across seven shelf–basin transects (south-north) to capture the meridional gradient between the estuary and the open ocean. Key variables such as temperature, absolute salinity, radiance, irradiance, nutrient concentrations, chlorophyll-a concentration, bacteria, phytoplankton and zooplankton abundance and taxonomy, and carbon stocks and fluxes were routinely measured onboard the Canadian research icebreaker CCGS Amundsen and from a barge in shallow coastal areas or for sampling within broken ice fields. This dataset is the results of a joint effort to tidy and standardize the collected data sets that will facilitate their reuse in further studies of the changing Arctic Ocean.
DOI: 10.17882/79489
title: EOT20 - A global Empirical Ocean Tide model from multi-mission satellite altimetry

description: EOT20 is the latest in a series of global ocean tide models developed at DGFI-TUM. EOT20 is created using residual tidal analysis of multi-mission altimetry data from the period of 1992 to 2019. Eleven satellite altimetry missions are used and the FES2014b tide model used as the reference model for the residual tidal analysis. The model extends throughout the global ocean, with EOT20 ranging from 66°S to 66°N with FES2014b being used to fill in the higher latitudes. The model provides data about the amplitudes and phases as well as the real and imaginary components of seventeen tidal constituents for the global ocean. These tidal constituents are: 2N2, J1, K1, K2, M2, M4, MF, MM, N2, O1, P1, Q1, S1, S2, SA, SSA and T2. Both the ocean and load tide atlases are provided with a spatial resolution of 1/8 degree. 
Two versions of the dataset are provided here. The final EOT20 version is provided open access and should be used for all applications. In addition, an old version is available on request. This version was the initial version available for download until July 1st, 2021. During the review process, it turned out that this version has issues within the netCDF4 file conversion and should not be used for any application.
DOI: 10.17882/81032
title: Daily Southern Ocean Sea Level Anomaly And Geostrophic Currents from multimission altimetry, 2013-2019

description: This product contains Sea Level Anomaly (SLA) and geostrophic currents anomalies in the subpolar Southern Ocean, including its sea-ice covered parts, from 2013 to 2019. It has been constructed by combining observations from multiple satellites, including Cryosat-2, Sentinel-3A, and AltiKa. Along-track measurements have been processed with state-of-the-art algorithms, such as neural network waveform classification algorithm, or physical retracking for both leads and open ocean for AltiKa. Measurements are mapped daily on a 25-km grid south of 50°S.
Dataset processing and description is available in Auger et al., Southern Ocean Sea Level Anomaly in the Sea-Ice Covered Sector From Multimission Satellite Observations [submitted].