cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5745561.v1
title: READ.TXT from Population, sex and body size: determinants of behavioural variations and behavioural correlations among wild zebrafish <i>Danio rerio</i>

description: Details of the measurements for each behavioural assay.
DOI: 10.6084/m9.figshare.5746842.v2
title: Sequence alignment from Lizards of the lost arcs: mid-Cenozoic diversification, persistence and ecological marginalization in the West Pacific.

description: Regions with complex geological histories often have diverse and highly endemic biotas, yet inferring the ecological and historical processes shaping this relationship remains challenging. Here, in the context of the taxon cycle model of insular community assembly, we investigate patterns of lineage diversity and habitat usage in a newly characterized vertebrate radiation centred upon the world's most geologically complex insular region: island arcs spanning from the Philippines to Fiji. On island arcs taxa are ecologically widespread , and provide evidence to support one key prediction of the taxon cycle, specifically that interior habitats (lowland rainforests, montane habitats) are home to a greater number of older or relictual lineages than are peripheral habitats (coastal and open forests).Oncontinental fringes, however, the clade shows a disjunct distribution away fromlowland rainforest, occurring in coastal, open or montane habitats. These results are consistent with a role for biotic interactions in shaping disjunct distributions (a central tenant of the taxon cycle), but we find this pattern most strongly on continental fringes not islands. Our results also suggest that peripheral habitats on islands, and especially island arcs, may be important for persistence and diversification, not just dispersal and colonization. Finally, new phylogenetic evidence for subaerial island archipelagos (with an associated biota) east of present-day Wallace's Line since the Oligocene has important implications for understanding long-term biotic interchange and assembly across Asia and Australia.
DOI: 10.6084/m9.figshare.5746842.v1
title: Sequence alignment from Lizards of the lost arcs: mid-Cenozoic diversification, persistence and ecological marginalization in the West Pacific

description: Regions with complex geological histories often have diverse and highly endemic biotas, yet inferring the ecological and historical processes shaping this relationship remains challenging. Here, in the context of the Taxon Cycle model of insular community assembly, we investigate patterns of lineage diversity and habitat usage in a newly characterized vertebrate radiation centred upon the world's most geologically complex insular region: island arcs spanning from the Philippines to Fiji. On island arcs taxa are ecologically widespread, and there is no evidence that interior habitats (lowland rainforests, montane habitats) are home to more older or relictual lineages than peripheral habitats (coastal and open forests) as might be predicted by a Taxon Cycle. On continental fringes however, the lineage shows a disjunct distribution away from lowland rainforest, occurring in coastal, open or montane habitats. These results are consistent with a role for biotic interactions in shaping disjunct distributions (a central tenant of the Taxon Cycle), but find this pattern most strongly on continental fringes not islands. They also suggest that peripheral habitats on islands, and especially island arcs, may be important for persistence and diversification, not just dispersal. Finally, new phylogenetic evidence for subaerial island archipelagos (with an associated biota) east of present-day Wallace's Line since the Oligocene has important implications for understanding long-term biotic interchange and assembly across Asia and Australia.
DOI: 10.6084/m9.figshare.5746920
title: Table S2. Differentially expressed transcripts. from Behavioural tactic predicts preoptic-hypothalamic gene expression more strongly than developmental morph in fish with alternative reproductive tactics.

description: Annotation information, including top BLAST hit and top BLAST hit e-value, mean group expression (TPM) and log2 fold change (logFC), and false discovery rate (FDR) for each comparison for all differentially expressed transcripts.
DOI: 10.6084/m9.figshare.5746920.v2
title: Table S2. Differentially expressed transcripts. from Behavioural tactic predicts preoptic-hypothalamic gene expression more strongly than developmental morph in fish with alternative reproductive tactics.

description: Annotation information, including top BLAST hit and top BLAST hit e-value, mean group expression (TPM) and log2 fold change (logFC), and false discovery rate (FDR) for each comparison for all differentially expressed transcripts.
DOI: 10.6084/m9.figshare.5746953
title: Code from Divide and conquer: intermediate levels of population fragmentation maximize cultural accumulation.

description: Identifying the determinants of cumulative cultural evolution is a key issue in the interdisciplinary field of cultural evolution. A widely held view is that large and well-connected social networks facilitate cumulative cultural evolution because they promote the spread of useful cultural traits and prevent the loss of cultural knowledge through factors such as drift. This view stems from models that focus on the transmission of cultural information, without considering how new cultural traits actually arise. In this paper, we review the literature from various fields that suggest that, under some circumstances, increased connectedness can decrease cultural diversity and reduce innovation rates. Incorporating this idea into an agent-based model, we explore the effect of population fragmentation on cumulative culture and show that, for a given population size, there exists an intermediate level of population fragmentation that maximizes the rate of cumulative cultural evolution. This result is explained by the fact that fully connected, non-fragmented, populations are able to maintain complex cultural traits but produce insufficient variation and so lack the cultural diversity required to produce highly complex cultural traits. Conversely, highly fragmented populations produce a variety of cultural traits but cannot maintain complex ones. In populations with intermediate levels of fragmentation, cultural loss and cultural diversity are balanced in a way that maximizes cultural complexity. Our results suggest that population structure needs to be taken into account when investigating the relationship between demography and cumulative culture.This article is part of the theme issue ‘Bridging cultural gaps: interdisciplinary studies in human cultural evolution’.
DOI: 10.6084/m9.figshare.5746920.v1
title: Table S2. Differentially expressed transcripts. from Behavioural tactic predicts preoptic-hypothalamic gene expression more strongly than developmental morph in fish with alternative reproductive tactics

description: Annotation information, including top BLAST hit and top BLAST hit e-value, mean group expression (TPM) and log2 fold change (logFC), and false discovery rate (FDR) for each comparison for all differentially expressed transcripts.
DOI: 10.6084/m9.figshare.5746953.v1
title: Code from Divide and conquer: intermediate levels of population fragmentation maximize cultural accumulation

description: Identifying the determinants of cumulative cultural evolution is a key issue in the interdisciplinary field of cultural evolution. A widely held view is that large and well-connected social networks facilitate cumulative cultural evolution because they promote the spread of useful cultural traits and prevent the loss of cultural knowledge through factors such as drift. This view stems from models that focus on the transmission of cultural information, without considering how new cultural traits actually arise. In this paper, we review the literature from various fields that suggest that, under some circumstances, increased connectedness can decrease cultural diversity and reduce innovation rates. Incorporating this idea into an agent-based model, we explore the effect of population fragmentation on cumulative culture and show that, for a given population size, there exists an intermediate level of population fragmentation that maximizes the rate of cumulative cultural evolution. This result is explained by the fact that fully connected, non-fragmented, populations are able to maintain complex cultural traits but produce insufficient variation and so lack the cultural diversity required to produce highly complex cultural traits. Conversely, highly fragmented populations produce a variety of cultural traits but cannot maintain complex ones. In populations with intermediate levels of fragmentation, cultural loss and cultural diversity are balanced in a way that maximizes cultural complexity. Our results suggest that population structure needs to be taken into account when investigating the relationship between demography and cumulative culture.This article is part of the theme issue ‘Bridging cultural gaps: interdisciplinary studies in human cultural evolution’.
DOI: 10.6084/m9.figshare.5759709
title: PES15k potential energy surface from High-accuracy water potential energy surface for the calculation of infrared spectra.

description: Fortran program for the PES15k potential
DOI: 10.6084/m9.figshare.5759715
title: Water line list from High-accuracy water potential energy surface for the calculation of infrared spectra.

description: Water line list in HITRAN format
DOI: 10.6084/m9.figshare.5759715.v2
title: Water line list from High-accuracy water potential energy surface for the calculation of infrared spectra.

description: Water line list in HITRAN format
DOI: 10.6084/m9.figshare.5759715.v1
title: Water line list from High-accuracy water potential energy surface for the calculation of infrared spectra

description: Water line list in HITRAN format
DOI: 10.6084/m9.figshare.5759733
title: Raw data from Inter-individual differences in the impulsive/compulsive dimension: deciphering related dopaminergic and serotonergic metabolisms at rest.

description: Behavioral and neurochemical raw data
DOI: 10.6084/m9.figshare.5759733.v2
title: Raw data from Inter-individual differences in the impulsive/compulsive dimension: deciphering related dopaminergic and serotonergic metabolisms at rest.

description: Behavioral and neurochemical raw data
DOI: 10.6084/m9.figshare.5759733.v1
title: Raw data from Inter-individual differences in the impulsive/compulsive dimension: deciphering related dopaminergic and serotonergic metabolisms at rest

description: Behavioral and neurochemical raw data
DOI: 10.6084/m9.figshare.5759940
title: ST1: Table of mitochondrial haplotypes for New Zealand mice from The genomic ancestry, landscape genetics, and invasion history of introduced mice in New Zealand.

description: Known mt_haplotypes listed are from King et al 2016. Coding is 1 = A, 2 = C, 3 = G, 4 = T, 0 = missing
DOI: 10.6084/m9.figshare.5759940.v2
title: ST1: Table of mitochondrial haplotypes for New Zealand mice from The genomic ancestry, landscape genetics, and invasion history of introduced mice in New Zealand.

description: Known mt_haplotypes listed are from King et al 2016. Coding is 1 = A, 2 = C, 3 = G, 4 = T, 0 = missing
DOI: 10.6084/m9.figshare.5759955
title: ST2: List of weighted SNP loci for subspecies identification from The genomic ancestry, landscape genetics, and invasion history of introduced mice in New Zealand.

description: Marker name on left, Shannon information content for each subspecies is listed, with an overall Shannon information content and divergent subspecies listed
DOI: 10.6084/m9.figshare.5759940.v1
title: ST1: Table of mitochondrial haplotypes for New Zealand mice from The genomic ancestry, landscape genetics, and invasion history of introduced mice in New Zealand

description: Known mt_haplotypes listed are from King et al 2016. Coding is 1 = A, 2 = C, 3 = G, 4 = T, 0 = missing
DOI: 10.6084/m9.figshare.5759955.v2
title: ST2: List of weighted SNP loci for subspecies identification from The genomic ancestry, landscape genetics, and invasion history of introduced mice in New Zealand.

description: Marker name on left, Shannon information content for each subspecies is listed, with an overall Shannon information content and divergent subspecies listed
DOI: 10.6084/m9.figshare.5759955.v1
title: ST2: List of weighted SNP loci for subspecies identification from The genomic ancestry, landscape genetics, and invasion history of introduced mice in New Zealand

description: Marker name on left, Shannon information content for each subspecies is listed, with an overall Shannon information content and divergent subspecies listed
DOI: 10.6084/m9.figshare.5769210
title: Dataset from Temporal variation of human encounters and the number of locations in which they occur: a longitudinal study of Hong Kong residents.

description: Dataset
DOI: 10.6084/m9.figshare.5769210.v2
title: Dataset from Temporal variation of human encounters and the number of locations in which they occur: a longitudinal study of Hong Kong residents.

description: Dataset
DOI: 10.6084/m9.figshare.5769210.v1
title: Dataset from Temporal variation of human encounters and the number of locations in which they occur: a longitudinal study of Hong Kong residents

description: Dataset
DOI: 10.6084/m9.figshare.5777526
title: Raw data from Ghosts of infections past: using archival samples to understand a century of monkeypox virus prevalence among host communities across space and time.

description: Raw data for all archival samples
DOI: 10.6084/m9.figshare.5777520
title: Species comparison data from Ghosts of infections past: using archival samples to understand a century of monkeypox virus prevalence among host communities across space and time.

description: Data organized by species with 95% CI
DOI: 10.6084/m9.figshare.5777526.v2
title: Raw data from Ghosts of infections past: using archival samples to understand a century of monkeypox virus prevalence among host communities across space and time.

description: Raw data for all archival samples
DOI: 10.6084/m9.figshare.5777526.v1
title: Raw data from Ghosts of infections past: using archival samples to understand a century of monkeypox virus prevalence among host communities across space and time

description: Raw data for all archival samples
DOI: 10.6084/m9.figshare.5777520.v2
title: Species comparison data from Ghosts of infections past: using archival samples to understand a century of monkeypox virus prevalence among host communities across space and time.

description: Data organized by species with 95% CI
DOI: 10.6084/m9.figshare.5777520.v1
title: Species comparison data from Ghosts of infections past: using archival samples to understand a century of monkeypox virus prevalence among host communities across space and time

description: Data organized by species with 95% CI
DOI: 10.6084/m9.figshare.5777493
title: R code for analyses from Ghosts of infections past: using archival samples to understand a century of monkeypox virus prevalence among host communities across space and time.

description: R code for statistical models and plots
DOI: 10.6084/m9.figshare.5777493.v2
title: R code for analyses from Ghosts of infections past: using archival samples to understand a century of monkeypox virus prevalence among host communities across space and time.

description: R code for statistical models and plots
DOI: 10.6084/m9.figshare.5777493.v1
title: R code for analyses from Ghosts of infections past: using archival samples to understand a century of monkeypox virus prevalence among host communities across space and time

description: R code for statistical models and plots
DOI: 10.6084/m9.figshare.5802735
title: Feeding season end date data. from Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics.

description: These are the ending dates for feedgrounds used to generate figure 5 in .csv format.
DOI: 10.6084/m9.figshare.5802723
title: R code for seroprevalence of unfed herds (fig 3) from Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics.

description: Reads in serology data from 3 unfed elk populations and generates a plot illustrating brucellosis prevalence, sample sizes, and trends over time.
DOI: 10.6084/m9.figshare.5802735.v2
title: Feeding season end date data. from Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics.

description: These are the ending dates for feedgrounds used to generate figure 5 in .csv format.
DOI: 10.6084/m9.figshare.5802741
title: R code for seroprevalence at test and slaughter feedgrounds (fig 4) from Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics.

description: Reads in serology data from 3 sites and generates a plot illustrating brucellosis prevalence, strength of the estimates, and trends over time in relation to when experimental treatment occurred.
DOI: 10.6084/m9.figshare.5802732
title: R code for feeding end dates in relation to seroprevalence at feedgrounds (fig 5) from Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics.

description: Reads in serology and end date data for two of the best-sampled feedgrounds. Generates a plot illustrating the correlation between the two.
DOI: 10.6084/m9.figshare.5802735.v1
title: Feeding season end date data. from Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics

description: These are the ending dates for feedgrounds used to generate figure 5 in .csv format.
DOI: 10.6084/m9.figshare.5802723.v2
title: R code for seroprevalence of unfed herds (fig 3) from Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics.

description: Reads in serology data from 3 unfed elk populations and generates a plot illustrating brucellosis prevalence, sample sizes, and trends over time.
DOI: 10.6084/m9.figshare.5802741.v2
title: R code for seroprevalence at test and slaughter feedgrounds (fig 4) from Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics.

description: Reads in serology data from 3 sites and generates a plot illustrating brucellosis prevalence, strength of the estimates, and trends over time in relation to when experimental treatment occurred.
DOI: 10.6084/m9.figshare.5802726
title: R code. Function to create prevalence estimates by location and year. from Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics.

description: This file is called in to other code files and is necessary for the generation of brucellosis prevalence estimates by site and year (and 95% confidence intervals).
DOI: 10.6084/m9.figshare.5802723.v1
title: R code for seroprevalence of unfed herds (fig 3) from Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics

description: Reads in serology data from 3 unfed elk populations and generates a plot illustrating brucellosis prevalence, sample sizes, and trends over time.
DOI: 10.6084/m9.figshare.5802732.v2
title: R code for feeding end dates in relation to seroprevalence at feedgrounds (fig 5) from Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics.

description: Reads in serology and end date data for two of the best-sampled feedgrounds. Generates a plot illustrating the correlation between the two.
DOI: 10.6084/m9.figshare.5802741.v1
title: R code for seroprevalence at test and slaughter feedgrounds (fig 4) from Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics

description: Reads in serology data from 3 sites and generates a plot illustrating brucellosis prevalence, strength of the estimates, and trends over time in relation to when experimental treatment occurred.
DOI: 10.6084/m9.figshare.5802738
title: R code. Function to create a smoother line using generalised additive models. from Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics.

description: This file is called in to other code files and is necessary for the generation of smoothed brucellosis prevalence estimates, including in years for which there is no data.
DOI: 10.6084/m9.figshare.5802726.v2
title: R code. Function to create prevalence estimates by location and year. from Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics.

description: This file is called in to other code files and is necessary for the generation of brucellosis prevalence estimates by site and year (and 95% confidence intervals).
DOI: 10.6084/m9.figshare.5802732.v1
title: R code for feeding end dates in relation to seroprevalence at feedgrounds (fig 5) from Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics

description: Reads in serology and end date data for two of the best-sampled feedgrounds. Generates a plot illustrating the correlation between the two.
DOI: 10.6084/m9.figshare.5802738.v2
title: R code. Function to create a smoother line using generalised additive models. from Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics.

description: This file is called in to other code files and is necessary for the generation of smoothed brucellosis prevalence estimates, including in years for which there is no data.
DOI: 10.6084/m9.figshare.5802744
title: Unfed elk herd serology data. from Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics.

description: This is the serology data used to generate figure 3 in .csv format.
DOI: 10.6084/m9.figshare.5802726.v1
title: R code. Function to create prevalence estimates by location and year. from Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics

description: This file is called in to other code files and is necessary for the generation of brucellosis prevalence estimates by site and year (and 95% confidence intervals).
DOI: 10.6084/m9.figshare.5802729
title: Test and slaughter serology data. from Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics.

description: This is the serology data used to generate figure 4 in .csv format.
DOI: 10.6084/m9.figshare.5802738.v1
title: R code. Function to create a smoother line using generalised additive models. from Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics

description: This file is called in to other code files and is necessary for the generation of smoothed brucellosis prevalence estimates, including in years for which there is no data.
DOI: 10.6084/m9.figshare.5802744.v2
title: Unfed elk herd serology data. from Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics.

description: This is the serology data used to generate figure 3 in .csv format.
DOI: 10.6084/m9.figshare.5802744.v1
title: Unfed elk herd serology data. from Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics

description: This is the serology data used to generate figure 3 in .csv format.
DOI: 10.6084/m9.figshare.5802729.v2
title: Test and slaughter serology data. from Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics.

description: This is the serology data used to generate figure 4 in .csv format.
DOI: 10.6084/m9.figshare.5802729.v1
title: Test and slaughter serology data. from Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics

description: This is the serology data used to generate figure 4 in .csv format.