cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.m0763
title: Data from: Discrimination of fast click series produced by tagged Risso’s dolphins (Grampus griseus) for echolocation or communication

description: Early studies that categorized odontocete pulsed sounds had few means of
 discriminating signals used for biosonar-based foraging from those used
 for communication. This capability to identify the function of sounds is
 important for understanding and interpreting behavior; it is also
 essential for monitoring and mitigating potential disturbance from human
 activities. Archival tags were placed on free-ranging Grampus griseus to
 quantify and discriminate between pulsed sounds used for
 echolocation-based foraging and those used for communication. Two types of
 rapid click-series pulsed sounds, buzzes and burst pulses, were identified
 as produced by the tagged dolphins and classified using a Gaussian mixture
 model based on their duration, association with jerk (i.e., rapid change
 of acceleration), and temporal association with click trains. Buzzes
 followed regular echolocation clicks and coincided with a strong jerk
 signal from accelerometers on the tag. They consisted of series averaging
 359 ± 210 (mean ± SD) clicks with an increasing repetition rate and
 relatively low amplitude. Burst pulses consisted of relatively short click
 series averaging 45 ± 54 clicks with decreasing repetition rate and longer
 inter-click interval that were less likely to be associated with regular
 echolocation and the jerk signal. These results suggest that the longer,
 relatively lower amplitude, jerk-associated buzzes are used in this
 species to capture prey, mostly during the bottom phase of foraging dives,
 as seen in other odontocetes. In contrast, the shorter, isolated burst
 pulses that are generally emitted by the dolphins while at or near the
 surface are used outside of a direct, known foraging context.
description: Grampus_griseus_pulsed_sound_discriminationWe provide information on (1) the inter-click intervals of clicks recorded on fifteen tagged Risso's dolphins (Grampus griseus) echolocating in the wild and (2) model parameters used to discriminate between pulsed sounds used for echolocation-based foraging and communication in this species.
DOI: 10.15468/dl.hbwtdm
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((7.51017 48.18649,7.50223 48.1452,7.52499 48.11942,7.56732 48.11765,7.60118 48.15579,7.60488 48.17237,7.55356 48.18543,7.51017 48.18649))",
 "HasGeospatialIssue is false",
 "TaxonKey is Mollusca"
 ]
}

 The dataset includes 12 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001460-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g3bumc
title: Occurrence Download

description: A dataset containing 3736 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Geometry POLYGON((105 20,170 20,170 70,105 70,105 20))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Salix pierotii"
 ]
}

 The dataset includes 3736 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001459-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7neq6n
title: Occurrence Download

description: A dataset containing 1075 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Geometry POLYGON((105 20,170 20,170 70,105 70,105 20))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Betula davurica"
 ]
}

 The dataset includes 1075 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001456-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.v23p8
title: Data from: I smell where you walked – how chemical cues influence movement decisions in ants

description: Interactions between animals are not restricted to direct encounters.
 Frequently, individuals detect the proximity of others through cues
 unintentionally left by others, such as prey species assessing predation
 risk based on indirect predator cues. However, while the importance of
 indirect cues in predator–prey interactions has been intensely studied,
 their role in interactions among competitors, and their consequences for
 community structure, are little known to date. Ant communities are usually
 structured by aggressive interactions between competing species.
 Responding to cues of others should be useful to avoid competitors or
 discover food sources. In ants and other insects, such cues include
 chemical footprints, which they leave while walking. Here, we investigated
 how different ant species respond to footprints of others. Ant colonies
 were confronted with footprints of other colonies or species, and the
 workers chose between cue-bearing and cue-free areas. Moreover, we
 determined the chemical composition of footprints, and compared the
 absolute quantities of footprint and cuticular hydrocarbons. Ants of the
 species Lasius niger avoided footprints of non-nestmate conspecifics, and
 tended to avoid footprints of two other species. We suggest that they
 avoided encounters with competitors to reduce costly fights. In contrast,
 three other ant species approached allospecific footprints, which may
 represent eavesdropping to find resources discovered by others. Three of
 the four ant species responded differently to nestmates and non-nestmate
 footprints either through footprint-following or antennation behavior. The
 chemical composition of footprints was species-specific and largely
 congruent to cuticular hydrocarbons. Footprint quantities left by single
 workers represented 1/170 to 1/64 of the quantity of their cuticular
 hydrocarbons. We showed that chemical footprints represent an important
 cue for behavioral decisions in ants. The ability to identify and respond
 to chemical footprints may represent an important strategy for insects to
 cope with competing species or colonies in their habitat.
description: Chemical and Behavioural
 data of the study'Raw Data':
 results of behavioral assays with Y-mazes. The Excel sheet contains data
 for individual ants and summed data for all 15 ants of one assay. Separate
 sheets are provided for cue assays and 'empty' control assays.
 'Chemical Data': Substances detected in footprints and cuticular
 hydrocarbons, with relative quantities in each sample. Absolute quantities
 in µg are presented in a separate sheet. The third sheet contains the
 cuticular hydrocarbons of all five ant species.Wüst Menzel I smell where you
 walked - Raw Data.zip
DOI: 10.5061/dryad.nr6bf
title: Data from: Catastrophic health expenditure according to employment status in South Korea: A population-based panel study

description: Objectives: Catastrophic health expenditure (CHE) means that medical
 spending of a household exceeds a certain level of capacity to pay.
 Previous studies of CHE have focused on benefits supported by the public
 sector or high medical cost incurred by treating diseases in South Korea.
 This study examines variance of CHE in these households according to
 changes in employment status. We also determine whether a relationship
 exists according to income level. Design: A longitudinal study. Setting:
 We used the Korea Welfare Panel Study (KOWEPS) conducted by the Korea
 Institute. Participants: These data consisted of 5,335 households during
 2009-2012. Outcome measure: CHE defined as health expenditures that were
 40% greater than the ability of the household to pay. Results: Households
 with people who experienced changes in job status from employed to
 unemployed (OR 2.79, 95% CI 2.06-3.78) or were unemployed with no status
 change (OR 1.57, 95% CI 1.28-1.92) were more likely to incur CHE compared
 to those who were consistently employed. In addition, low-income families
 that either lost a job (OR 3.52, 95% CI 2.44-5.10) or were already
 unemployed (OR 1.67, 95% CI 1.29-2.16) were more likely to incur CHE
 compared to those with a consistent job. Conclusions: Given the insecure
 employment status of people with low-income, they are more likely to face
 barriers in obtaining needed health services. Meeting their needs for
 health care is an important consideration.
description: koweps_fn
DOI: 10.5061/dryad.66kc7
title: Data from: Does wildlife resource selection accurately inform corridor conservation?

description: Evaluating landscape connectivity and identifying and protecting corridors
 for animal movement have become central challenges in applied ecology and
 conservation. Currently, resource selection analyses are widely used to
 focus corridor planning where animal movement is predicted to occur. An
 animal's behavioural state (e.g. foraging, dispersing) is a
 significant determinant of resource selection patterns, yet has largely
 been ignored in connectivity assessments. We review 16 years of
 connectivity studies employing resource selection analysis to evaluate how
 researchers have incorporated animal behaviour into corridor planning, and
 highlight promising new approaches for identifying wildlife corridors. To
 illustrate the importance of behavioural information in such analyses, we
 present an empirical case study to test behaviour-specific predictions of
 connectivity with long-distance dispersal movements of African wild dogs
 Lycaon pictus. We conclude by recommending strategies for developing more
 realistic connectivity models for future conservation efforts. Our review
 indicates that most connectivity studies conflate resource selection with
 connectivity requirements, which may result in misleading estimates of
 landscape resistance, and lack validation of proposed connectivity models
 with movement data. Our case study shows that including only directed
 movement behaviour when measuring resource selection reveals markedly
 different, and more accurate, connectivity estimates than a model
 measuring resource selection independent of behavioural state. Synthesis
 and applications. Our results, using African wild dogs as a case study,
 suggest that resource selection analyses that fail to consider an
 animal's behavioural state may be insufficient in targeting movement
 pathways and corridors for protection. This failure may result in
 misidentification of wildlife corridors and misallocation of limited
 conservation resources. Our findings underscore the need for considering
 patterns of animal movement in appropriate behavioural contexts to ensure
 the effective application of resource selection analyses for corridor
 planning.
description: African wild dog GPS
 dataGPS data collected from
 collared African wild dogs.JAEfile_Fig2_DispersalPaths.csv
DOI: 10.5061/dryad.43q71
title: Data from: TipDatingBeast: an R package to assist the implementation of phylogenetic tip-dating tests using BEAST

description: Molecular tip-dating of phylogenetic trees is a growing discipline that
 uses DNA sequences sampled at different points in time to co-estimate the
 timing of evolutionary events with rates of molecular evolution. In this
 context, BEAST, a program for Bayesian analysis of molecular sequences, is
 the most widely used phylogenetic tool. Here, we introduce TipDatingBeast,
 an R package built to assist the implementation of various phylogenetic
 tip-dating tests using BEAST. TipDatingBeast currently contains two main
 functions. The first one allows preparing date-randomization analyses,
 which assess the temporal signal of a dataset. The second function allows
 performing leave-one-out analyses, which test for the consistency between
 independent calibration sequences and allow pinpointing those leading to
 potential bias. We apply those functions to an empirical dataset and
 supply practical guidance for results interpretation.
description: BEAST log files for
 Leave-one-out-cross-validationExample BEAST log files
 for Leave-one-out-cross-validation analysis and additional files to plot
 results using the "PlotLOOCV" function using the R-package
 TipDatingBeast. See tutorial included in package for
 commands.LOOCV
 logs.zipExample BEAST log files
 for Date-randomized testExample BEAST log files
 for Date-randomized test to plot results using the "PlotDRT"
 function using the R-package TipDatingBeast. See tutorial included in
 package for commands.DRT_logs.zipExample datafile for BEAST 1Example datafile for BEAST 1 used to produce the log files deposited here.Flu_BEAST_18.xmlExample datafile for BEAST 2Example datafile for BEAST 2 used to produce the log files deposited here.Flu_BEAST_232.xml
DOI: 10.26275/d2e0-r8ik
title: Using electrical nerve stimulation to control atrial fibrillation

description: Continuous monitoring of atrial fibrillation burden during subcutaneous nerve stimulation therapy using Apple Watch and mobile cardiac telemetry. STALL AF
DOI: 10.5061/dryad.p5n87
title: Data from: Human shields mediate sexual conflict in a top predator

description: Selecting the right habitat in a risky landscape is crucial for an
 individual's survival and reproduction. In predator–prey systems,
 prey often can anticipate the habitat use of their main predator and may
 use protective associates (i.e. typically an apex predator) as shields
 against predation. Although never tested, such mechanisms should also
 evolve in systems in which sexual conflict affects offspring survival.
 Here, we assessed the relationship between offspring survival and habitat
 selection, as well as the use of protective associates, in a system in
 which sexually selected infanticide (SSI), rather than interspecific
 predation, affects offspring survival. We used the Scandinavian brown bear
 (Ursus arctos) population with SSI in a human-dominated landscape as our
 model system. Bears, especially adult males, generally avoid humans in our
 study system. We used resource selection functions to contrast habitat
 selection of GPS-collared mothers that were successful (i.e. surviving
 litters, n = 19) and unsuccessful (i.e. complete litter loss, n = 11) in
 keeping their young during the mating season (2005–2012). Habitat
 selection was indeed a predictor of litter survival. Successful mothers
 were more likely to use humans as protective associates, whereas
 unsuccessful mothers avoided humans. Our results suggest that principles
 of predator–prey and fear ecology theory (e.g. non-consumptive and
 cascading effects) can also be applied to the context of sexual conflict.
description: Human shields mediate
 sexual conflict in a top predator - DataText file containing GPS
 reloaction data linked to spatial covariates and bear metadata. Note that
 the continuous variables are already scaled.HS_data_24052016.txtHuman shields mediate sexual conflict in a top predator - main r codeHS_code.R
DOI: 10.5061/dryad.6tn70
title: Data from: Specimens at the center: an informatics workflow and toolkit for specimen-level analysis of public DNA database data

description: Major public DNA databases — NCBI GenBank, the DNA DataBank of Japan
 (DDBJ), and the European Molecular Biology Laboratory (EMBL) — are
 invaluable biodiversity libraries. Systematists and other biodiversity
 scientists commonly mine these databases for sequence data to use in
 phylogenetic studies, but such studies generally use only the taxonomic
 identity of the sequenced tissue, not the specimen identity. Thus studies
 that use DNA supermatrices to construct phylogenetic trees with species at
 the tips typically do not take advantage of the fact that for many
 individuals in the public DNA databases, several DNA regions have been
 sampled; and for many species, two or more individuals have been sampled.
 Thus these studies typically do not make full use of the multigene
 datasets in public DNA databases to test species coherence and select
 optimal sequences to represent a species. In this study, we introduce a
 set of tools developed in the R programming language to construct
 individual-based trees from NCBI GenBank data and present a set of trees
 for the genus Carex (Cyperaceae) constructed using these methods. For the
 more than 770 species for which we found sequence data, our approach
 recovered an average of 1.85 gene regions per specimen, up to seven for
 some specimens, and more than 450 species represented by two or more
 specimens. Depending on the subset of genes analyzed, we found up to 42%
 of species monophyletic. We introduce a simple tree statistic—the
 Taxonomic Disparity Index (TDI)—to assist in curating specimen-level
 datasets and provide code for selecting maximally informative (or,
 conversely, minimally misleading) sequences as species exemplars. While
 tailored to the Carex dataset, the approach and code presented in this
 paper can readily be generalized to constructing individual-level trees
 from large amounts of data for any species group.
description: All scripts and data
 filesALL.GCC.FILES.zip
DOI: 10.5061/dryad.qt584
title: Data from: Impacts of temperature and lunar day on gene expression profiles during a monthly reproductive cycle in the brooding coral Pocillopora damicornis

description: Reproductive timing in brooding corals has been correlated to temperature
 and lunar irradiance, but the mechanisms by which corals transduce these
 environmental variables into molecular signals are unknown. To gain
 insight into these processes, global gene expression profiles in the coral
 Pocillopora damicornis were examined (via RNA-Seq) across lunar phases and
 between temperature treatments, during a monthly planulation cycle. The
 interaction of temperature and lunar day together had the largest
 influence on gene expression. Mean timing of planulation, which occurred
 at lunar days 7.4 and 12.5 for 28- and 23°C-treated corals, respectively,
 was associated with an upregulation of transcripts in individual
 temperature treatments. Expression profiles of planulation-associated
 genes were compared between temperature treatments, revealing that
 elevated temperatures disrupted expression profiles associated with
 planulation. Gene functions inferred from homologous matches to online
 databases suggest complex neuropeptide signalling, with calcium as a
 central mediator, acting through tyrosine kinase and G protein-coupled
 receptor pathways. This work contributes to our understanding of coral
 reproductive physiology and the impacts of environmental variables on
 coral reproductive pathways.
description: Pdamicornis_reference_transcriptomeThis file is a reference transcriptome for the coral Pocillopora damicornis. The reference contains 78,519 transcripts that represent the longest subcomponent of each subcomponent isogroup from the Trinity assembly. The raw reads used for the Trinity assembly are described in the following publication: Vidal-Dupiol J, Zoccola D, Tambutté E, et al. (2013) Genes related to ion-transport and energy production are upregulated in response to CO 2-driven pH decrease in corals: new insights from transcriptome analysis. PloS ONE, 8, e58652.longest_sc_Pdam_transcriptome_trinity.fastaraw counts fileRaw counts of the 46,807 transcripts that had sequenced reads mapped to them, using the program SHRiMP (version 2.2.2).raw_counts_Trinity_mapping.txt
DOI: 10.5061/dryad.d2tr2
title: Data from: Prediction CH4 emissions from the wetlands in the Sanjiang Plain of northeastern China in the 21st century

description: The Sanjiang Plain has been experienced significant wetland loss due to
 expanded agricultural activities, and will be potentially restored by the
 China National Wetland Conservation Action Plan (NWCP) in future. The
 objective of this study is to evaluate the impact of future climate
 warming and wetland restoration on wetland CH4 emissions in northeast
 China. We used an atmosphere-vegetation interaction model (AVIM2) to drive
 a modified biogeophysical model (CH4MODwetland), and projected CH4 flux
 variations from the Sanjiang Plain wetlands under different Representative
 Concentration Pathway scenarios throughout the 21st century. Model
 validation showed that the regressions between the observed and simulated
 CH4 fluxes by the modified model produced an R2 of 0.49 with a slope of
 0.87 (p&lt;0.001, n = 237). According to the AVIM2 simulation, the net
 primary productivity of the Sanjiang Plain wetlands will increase by 38.2
 g m-2 yr-1, 116.6 g m-2 yr-1 and 250.4 g m-2 yr-1 under RCP 2.6, RCP 4.5
 and RCP 8.5, respectively, by the end of this century. For RCP 2.6, 4.5
 and 8.5 scenarios, the CH4 fluxes will increase by 5.7 g m-2 yr-1, 57.5 g
 m-2 yr-1 and 112.2 g m-2 yr-1. Combined with the wetland restoration, the
 regional emissions will increase by 0.18‒1.52 Tg. The CH4 emissions will
 be stimulated by climate change and wetland restoration. Regional wetland
 restoration planning should be directed against different climate
 scenarios in order to suppress methane emissions.
description: data for the
 paperThis data source
 contained all of the result data in the paper. Please see the readme file
 to see the description of each dataset.data.rar
DOI: 10.5061/dryad.d47c1
title: Data from: Winter wren populations show adaptation to local climate

description: Most studies of evolutionary responses to climate change have focused on
 phenological responses to warming, and provide only weak evidence for
 evolutionary adaptation. This could be because phenological changes are
 more weakly linked to fitness than more direct mechanisms of climate
 change impacts, such as selective mortality during extreme weather events
 which have immediate fitness consequences for the individuals involved.
 Studies examining these other mechanisms may be more likely to show
 evidence for evolutionary adaptation. To test this, we quantify regional
 population responses of a small resident passerine (winter wren
 Troglodytes troglodytes) to a measure of winter severity (number of frost
 days). Annual population growth rate was consistently negatively
 correlated with this measure, but the point at which different populations
 achieved stability (λ = 1) varied across regions and was closely
 correlated with the historic average number of frost days, providing
 strong evidence for local adaptation. Despite this, regional variation in
 abundance remained negatively related to the regional mean number of
 winter frost days, potentially as a result of a time-lag in the rate of
 evolutionary response to climate change. As expected from Bergmann's
 rule, individual wrens were heavier in colder regions, suggesting that
 local adaptation may be mediated through body size. However, there was no
 evidence for selective mortality of small individuals in cold years, with
 annual variation in mean body size uncorrelated with the number of winter
 frost days, so the extent to which local adaptation occurs through changes
 in body size, or another mechanism remains uncertain.
description: Wren
 biometricsWren biometric
 datasetwrenbiometrics.csvWren BBSWren BBS datasetwrendat.csv