cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.31026790.v1
title: Locus-specific transcriptional regulation of transposable elements by p53

description: The tumor suppressor p53 protects genomic integrity in part by regulating transposable elements (TEs). Studies of p53-TE interactions rely on synthetic DNA and reporter assays, estimating expression only at the family or subfamily level and lacking locus-specific resolution. To address this limitation, we developed a computational pipeline for ChIP-seq and RNA-seq analysis that employs advanced algorithms to accurately assign short reads mapping to multiple genomic locations. This approach enables precise quantification of TE transcripts at the locus level. By integrating p53 ChIP peaks with differentially expressed TE transcripts, we performed a global analysis of TE expression upon p53 binding. Applying this framework to lung fibroblast IMR90 and colon cancer HCT116 cells treated with p53 activators, we observed a striking pattern: TEs were predominantly activated in normal IMR90 cells but repressed in HCT116 cancer cells. Further analysis of 24 transcriptomes and 10 cistromes confirmed this trend as a distinguishing hallmark between normal and cancer cells. At the family level, normal cells showed broad TE upregulation, whereas cancer cells exhibited selective repression of Alu and LINE elements. These findings provide the first comprehensive, locus-specific view of TE expression associated with p53 binding, implicating a potential role of chromatin context in TE regulation.
DOI: 10.48580/dwvb.v78
title: Gastrotermes spinatus gen. n. sp. n., an African soil-feeding termite described from the worker caste (Isoptera, Termitidae, Apicotermitidae)
DOI: 10.48580/dwvk.v80
title: Scobinigaster, a new genus of Lethaeini from Madagascar (Hemiptera: Heteroptera: Rhyparochromidae)
DOI: 10.48580/dwvl.v78
title: Three new species of the genus Sphaerobulbus from China (Coleoptera: Staphylinidae)
DOI: 10.6084/m9.figshare.31026790
title: Locus-specific transcriptional regulation of transposable elements by p53

description: The tumor suppressor p53 protects genomic integrity in part by regulating transposable elements (TEs). Studies of p53-TE interactions rely on synthetic DNA and reporter assays, estimating expression only at the family or subfamily level and lacking locus-specific resolution. To address this limitation, we developed a computational pipeline for ChIP-seq and RNA-seq analysis that employs advanced algorithms to accurately assign short reads mapping to multiple genomic locations. This approach enables precise quantification of TE transcripts at the locus level. By integrating p53 ChIP peaks with differentially expressed TE transcripts, we performed a global analysis of TE expression upon p53 binding. Applying this framework to lung fibroblast IMR90 and colon cancer HCT116 cells treated with p53 activators, we observed a striking pattern: TEs were predominantly activated in normal IMR90 cells but repressed in HCT116 cancer cells. Further analysis of 24 transcriptomes and 10 cistromes confirmed this trend as a distinguishing hallmark between normal and cancer cells. At the family level, normal cells showed broad TE upregulation, whereas cancer cells exhibited selective repression of Alu and LINE elements. These findings provide the first comprehensive, locus-specific view of TE expression associated with p53 binding, implicating a potential role of chromatin context in TE regulation.
DOI: 10.15468/dl.wrxryq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lecidea atomaria)",
 "Country is one of (Norway)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1986",
 "Year is less than or equal to 2025",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Machine Observation"
 ]
 }
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024327-260208012135463/datasets/export for details.
DOI: 10.48580/dwty.v74
title: Taxonomic revision and phylogenetic position of the flying squirrel genus Biswamoyopterus (Mammalia, Rodentia, Sciuridae, Pteromyini) on the northern Indo-China peninsula
DOI: 10.48580/dwv3.v72
title: A revised taxonomy of Asian snail-eating snakes Pareas (Squamata, Pareidae): evidence from morphological comparison and molecular phylogeny
DOI: 10.48580/dwv5.v80
title: Redescription of the female, male, larva and pupa of Sabethes (Sabethoides) glaucodaemon (Dyar & Shannon) (Diptera: Culicidae) and description of the female genitalia
DOI: 10.48580/dwv8.v82
title: Three new species and new records of the genus Centromerus (Araneae, Linyphiidae) from Italy
DOI: 10.48580/dwtr.v82
title: Evolution of the hectocotylus in Sepiolinae (Cephalopoda: Sepiolidae) and description of four new genera
DOI: 10.48580/dwts.v83
title: Croton calcareus: a new species of dragon’s blood (Euphorbiaceae) from dry forest in the state of Chiapas, Mexico
DOI: 10.48580/dwtt.v86
title: Capparis macrantha sp. nov. (Capparaceae, Brassicales), a new shrub species from a deciduous forest of the Nam Kading National Protected Area (central Lao PDR)
DOI: 10.48580/dwtw.v81
title: Synopsis of the carpenter bee subgenus Xylocopa (Schonnherria) Lepeletier, 1841 (Hymenoptera: Apidae) in Colombia, with designation of lectotypes and the description of two new species
DOI: 10.57969/s9159w
title: Lagrangian Drifter Laboratory at Scripps Institution of Oceanography Hurricane Michael (2018) First-Five Wave Data

description: An array of 10 surface drifters was deployed 24-hours ahead of Hurricane Michael and captured the surface temperature, pressure, wind and directional wind-sea and swell energy across the storm center one day before it made landfall on 10-Oct-2018 as a Category 5 Hurricane. There were 2 Surface Velocity Program – Barometer Drifters (SVPBD), 3 MiniMet drifters and 5 Directional Wave Spectra Drifters (DWSDs). Hurricane Michael encountered the array at roughly 15:00 UTC on 9 October 2018, with a minimum sea-level pressure recorded of 969 mB and extrapolated 10-m wind speeds of 26.1 m/s. Drifter directional wave spectra and drifter wind observations provide the shift of wave energy between frequency bands, and the transformation from swell to wind-sea in each quadrant of the storm. The observations are split into two datasets the first provides the sea surface temperature, pressure, wind, and averaged wave variables of peak period and significant wave height. The second provides the first-five coefficients of the directional wave spectra.
description: Centurioni, Luca, Lance Braasch, Enrico Di Lauro, Pasquale Contestabile, Francesco De Leo, Raffaella Casotti, Leopoldo Franco, and Diego Vicinanza. 2017. “A NEW STRATEGIC WAVE MEASUREMENT STATION OFF NAPLES PORT MAIN BREAKWATER”. Coastal Engineering Proceedings 1 (35), waves.36. https://doi.org/10.9753/icce.v35.waves.36.
description: Centurioni, L. R. 2018. Drifter Technology and Impacts for Sea Surface Temperature, Sea-Level Pressure, and Ocean Circulation Studies, in Observing the Oceans in Real Time, edited by R. Venkatesan, A. Tandon, E. D'Asaro and M. A. Atmanand, pp. 37-57, Springer International Publishing, Cham. https://link.springer.com/chapter/10.1007/978-3-319-66493-4_3
description: Schönau, M.C., Paluszkiewicz, T., and Centurioni, L., Komaromi, W.A., Jin, H., and Doyle, J.D. (2023). In situ observations at the air-sea interface by expendable air-deployed drifters under Hurricane Michael (2018), Geophysical Research Letters, accepted.
DOI: 10.5517/cc5z85k
title: CCDC 178038: Experimental Crystal Structure Determination

description: Related Article: Aibing Xia, P.R.Sharp|2002|Polyhedron|21|1305|doi:10.1016/S0277-5387(02)00979-8
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5xg3m
title: CCDC 176300: Experimental Crystal Structure Determination

description: Related Article: Jung Su Park, Kyoung-Tae Youm, Moo-Jin Jun|2002|Polyhedron|21|1273|doi:10.1016/S0277-5387(02)01009-4
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5xg4n
title: CCDC 176301: Experimental Crystal Structure Determination

description: Related Article: Jung Su Park, Kyoung-Tae Youm, Moo-Jin Jun|2002|Polyhedron|21|1273|doi:10.1016/S0277-5387(02)01009-4
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5whr8
title: CCDC 175390: Experimental Crystal Structure Determination

description: Related Article: M.W.Cooke, C.A.Murphy, T.S.Cameron, E.J.Beck, G.Vamvounis, M.A.S.Aquino|2002|Polyhedron|21|1235|doi:10.1016/S0277-5387(02)00998-1
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5xg5p
title: CCDC 176302: Experimental Crystal Structure Determination

description: Related Article: Jung Su Park, Kyoung-Tae Youm, Moo-Jin Jun|2002|Polyhedron|21|1273|doi:10.1016/S0277-5387(02)01009-4
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5whs9
title: CCDC 175391: Experimental Crystal Structure Determination

description: Related Article: M.W.Cooke, C.A.Murphy, T.S.Cameron, E.J.Beck, G.Vamvounis, M.A.S.Aquino|2002|Polyhedron|21|1235|doi:10.1016/S0277-5387(02)00998-1
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5vbjv
title: CCDC 174267: Experimental Crystal Structure Determination

description: Related Article: I.Chakraborty, S.Bhattacharyya, A.Chakravorty|2002|Polyhedron|21|1597|doi:10.1016/S0277-5387(02)01026-4
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5whtb
title: CCDC 175392: Experimental Crystal Structure Determination

description: Related Article: M.W.Cooke, C.A.Murphy, T.S.Cameron, E.J.Beck, G.Vamvounis, M.A.S.Aquino|2002|Polyhedron|21|1235|doi:10.1016/S0277-5387(02)00998-1
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5vbgs
title: CCDC 174265: Experimental Crystal Structure Determination

description: Related Article: Hyun Yong Cho, Soo-Gyun Roh, Jong Hwa Jeong|2002|Polyhedron|21|1211|doi:10.1016/S0277-5387(02)01008-2
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5v7w3
title: CCDC 174185: Experimental Crystal Structure Determination

description: Related Article: A.Lehtonen, R.Sillanpaa|2002|Polyhedron|21|1017|doi:10.1016/S0277-5387(02)00897-5
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5vbht
title: CCDC 174266: Experimental Crystal Structure Determination

description: Related Article: Hyun Yong Cho, Soo-Gyun Roh, Jong Hwa Jeong|2002|Polyhedron|21|1211|doi:10.1016/S0277-5387(02)01008-2
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5v7x4
title: CCDC 174186: Experimental Crystal Structure Determination

description: Related Article: A.Lehtonen, R.Sillanpaa|2002|Polyhedron|21|1017|doi:10.1016/S0277-5387(02)00897-5
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5v7y5
title: CCDC 174187: Experimental Crystal Structure Determination

description: Related Article: A.Lehtonen, R.Sillanpaa|2002|Polyhedron|21|1017|doi:10.1016/S0277-5387(02)00897-5
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5z2nv
title: CCDC 177867: Experimental Crystal Structure Determination

description: Related Article: T.Gunnlaugsson, R.J.H.Davies, M.Nieuwenhuyzen, C.S.Stevenson, R.Viguier, S.Mulready|2002|Chem.Commun.||2136|doi:10.1039/b205349g
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc659yl
title: CCDC 183859: Experimental Crystal Structure Determination

description: Related Article: Rong Cao, K.Tatsumi|2002|Chem.Commun.||2144|doi:10.1039/b203411e
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc659zm
title: CCDC 183860: Experimental Crystal Structure Determination

description: Related Article: Rong Cao, K.Tatsumi|2002|Chem.Commun.||2144|doi:10.1039/b203411e
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc65b0p
title: CCDC 183861: Experimental Crystal Structure Determination

description: Related Article: Rong Cao, K.Tatsumi|2002|Chem.Commun.||2144|doi:10.1039/b203411e
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc69wkx
title: CCDC 188249: Experimental Crystal Structure Determination

description: Related Article: M.Kondo, M.Miyazawa, Y.Irie, R.Shinagawa, T.Horiba, A.Nakamura, T.Naito, K.Maeda, S.Utsuno, F.Uchida|2002|Chem.Commun.||2156|doi:10.1039/b205866a
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc6bnlr
title: CCDC 188994: Experimental Crystal Structure Determination

description: Related Article: M.A.Paver, J.S.Joy, M.B.Hursthouse|2002|Chem.Commun.||2150|doi:10.1039/b206228c
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc69kyz
title: CCDC 187951: Experimental Crystal Structure Determination

description: Related Article: Xu-Hui Zhu, N.Mercier, A.Riou, P.Blanchard, P.Frere|2002|Chem.Commun.||2160|doi:10.1039/b205543k
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc62g3t
title: CCDC 181105: Experimental Crystal Structure Determination

description: Related Article: K.A.Udachin, G.D.Enright, P.O.Brown, J.A.Ripmeester|2002|Chem.Commun.||2162|doi:10.1039/b204313k
description: Related Article: P.O.Brown, K.A.Udachin, G.D.Enright, J.A.Ripmeester|2006|Chem.-Eur.J.|12|8240|doi:10.1002/chem.200600434
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc69kz0
title: CCDC 187952: Experimental Crystal Structure Determination

description: Related Article: Xu-Hui Zhu, N.Mercier, A.Riou, P.Blanchard, P.Frere|2002|Chem.Commun.||2160|doi:10.1039/b205543k
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc62g5w
title: CCDC 181107: Experimental Crystal Structure Determination

description: Related Article: K.A.Udachin, G.D.Enright, P.O.Brown, J.A.Ripmeester|2002|Chem.Commun.||2162|doi:10.1039/b204313k
description: Related Article: P.O.Brown, K.A.Udachin, G.D.Enright, J.A.Ripmeester|2006|Chem.-Eur.J.|12|8240|doi:10.1002/chem.200600434
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc62g4v
title: CCDC 181106: Experimental Crystal Structure Determination

description: Related Article: K.A.Udachin, G.D.Enright, P.O.Brown, J.A.Ripmeester|2002|Chem.Commun.||2162|doi:10.1039/b204313k
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc67vcm
title: CCDC 186290: Experimental Crystal Structure Determination

description: Related Article: L.E.Cheruzel, Jianping Wang, M.S.Mashuta, R.M.Buchanan|2002|Chem.Commun.||2166|doi:10.1039/b204799c
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc67vdn
title: CCDC 186291: Experimental Crystal Structure Determination

description: Related Article: L.E.Cheruzel, Jianping Wang, M.S.Mashuta, R.M.Buchanan|2002|Chem.Commun.||2166|doi:10.1039/b204799c
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc6c6rh
title: CCDC 189526: Experimental Crystal Structure Determination

description: Related Article: Moonhyun Oh, G.B.Carpenter, D.A.Sweigart|2002|Chem.Commun.||2168|doi:10.1039/b206458h
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.