cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/kxd5f8vpt4
title: Queryable single-cell RNA-seq (10x Genomics) datasets of Human and Mouse spermatogenic cells

description: To reveal distinct transcriptomes associated with various spermatogenic cells in both mouse and human testes, including spermatogonial stem cells (SSCs) and all of their subsequent progeny, we used the 10x Genomics Chromium (a commercialized Drop-Seq variant) to perform single-cell RNA-seq on various cell populations. Raw data and analyzed data (gene expression matrices) are deposited into the NIH GEO database. Here we include queryable, annotated and interactive files that can be used to compare single-cell transcriptomes. Spermatogonia from immature (P6) and adult Id4-Egfp transgenic mice were used. The GFP-bright and dim phenotypes exhibit distinct fates when assayed by transplantation, with ID4-EGFPbright cells highly enriched for SSCs, and ID4-EGFPdim cells enriched for progenitors. Corresponding human spermatogonia were enriched from human testicular tissue by multi-parameter FACS. For both human and mouse, StaPut gravity sedimentation enriched for meiotic spermatocytes and post-meiotic spermatids and we profiled unselected steady-state spermatogenic cells. The data from these experiments are stored in Loupe Cell Browser files (.cloupe) which are generated during analysis of 10x Genomics Single-cell data and can be opened and queried with the Loupe Cell Browser (10X Genomics). This software can be downloaded for free from https://support.10xgenomics.com/single-cell-gene-expression/software/downloads/latest. It is important to note that the companion manuscript for these data used additional analyses that are not represented in these files. The following datasets are available: 1. Unselected or sorted P6 ID4-EGFP+ spermatogonia (sorted separately as EGFP-bright or EGFP-dim) were used for this study. Data are from 13094 cells and can be found in the following file: P6 Mouse Spermatogonia.cloupe (aggregate of three datasets, P6 ID4-EGFP bright/dim/unselected) 2. Unselected or sorted Adult ID4-EGFP+ spermatogonia (sorted separately as EGFP-bright or EGFP-dim), three replicate preparations of steady-state unselected spermatogenic cells, and StaPut-enriched adult spermatocytes and spermatids were used for this study. Data are from 17491 cells and can be found in the following files: Adult Mouse Sorted Spermatogonia.cloupe (Aggregated Ad Spg- ID4-EGFP bright/dim/CD9bright) Mouse Unselected Spermatogenic cells.cloupe (3 replicates of steady-state spermatogenic cells) Mouse StaPut Spermatocytes.cloupe Mouse StaPut Spermatids.cloupe 3. Sorted adult Human spermatogonia, three replicates of steady-state unselected spermatogenic cells, and StaPut-enriched adult spermatocytes and spermatids were used. Data are from 32727 cells and can be found in the following files: Human Sorted Spermatogonia.cloupe (3 replicates) Human Unselected Spermatogenic Cells.cloupe (3 replicates of steady-state spermatogenic cells) Human StaPut Spermatocytes.cloupe (2 replicates) Human StaPut Spermatids.cloupe (2 replicates)
DOI: 10.17632/wry4vkxsj3
title: LINF_170012400

description: Acyl-CoA-binding domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/rpbkxbf29s
title: Data for: Differences in Outcomes Based on Sex for Pediatric Patients Undergoing Pyloromyotomy

description: Revised statistical analysis for revised manuscript
DOI: 10.6084/m9.figshare.21729026.v1
title: Hyperglycemia

description: Hyperglycemia and HIV death
DOI: 10.17632/4vc8brnmct
title: Prevalence of Diabetes Mellitus and Associated Risk Factors in Galkacyo, Puntland- Somalia: The Need for an Action

description: This data describes a descriptive study conducted to assess the prevalence of diabetes mellitus in Galkacyo.
DOI: 10.17632/2435n7256j
title: Data for: An optimization-driven dynamic vehicle routing algorithm for on-demand meal delivery using drones

description: This is a simulated data set for a 6-hour on-demand meal delivery operation. There are 353 orders (approx. 1 order per minute), 50 delivery drones with different capacities and max. velocities and 4 charging depots. The simulated service area is a 500 by 500 square area.
DOI: 10.17632/xp76bp3zxs
title: Determination of the space group and unit cell for a periodic solid ☆

description: Abstract We present the code for finding a space group and appropriate crystallography unit cell for a periodic solid. A space group is found in a standard form (as given in the International Tables for Crystallography (1992)). An arbitrary choice of the unit cell is allowed as an input in the sense that there exists the infinity of geometrical choices. In addition, the sets of the symmetrically equivalent atoms and the point group for each set, shift vectors which do not change the representation of ... Title of program: SGROUP Catalogue Id: ADON_v1_0 Nature of problem In crystallography, in ab-initio method and in the problems where symmetry of a periodic solid is important, there is a need of knowledge of a space group and the appropriate geometrical choice of a unit cell. Versions of this program held in the CPC repository in Mendeley Data ADON_v1_0; SGROUP; 10.1016/S0010-4655(01)00212-0 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/f6yg636vpz
title: Ross Ice Shelf Transantarctic outlet glacier surface elevations from 1960-1964

description: Historical digital elevation models (DEMs) of Darwin/Hatherton, Byrd, Nimrod, Beardmore, Shackleton, Amundsen, and Scott glaciers have been generated for portions of their grounded ice using oblique trimetrogon aerial (TMA) photography with modern-day ground control in structure-from-motion photogrammetric (SfM) software. The TMA photos were collected over 1960-1964 by the U.S. Navy at high-oblique (&gt;30º) angles at altitudes ranging from 6,100 to 7,600 m. The 9x9 in (23x23 cm) film negatives were digitized decades later by the U.S. Geological Survey at a resolution of 25 μm and freely available for download. A total of 65 oblique photographs were used in sets of three or five (2-3 sets per glacier) in SfM photogrammetric software with ground control of stable terrain that was manually extracted from the Regional Elevation Model of Antarctica (REMA; https://www.pgc.umn.edu/data/rema/) 2 m DEM strips from 2012-2017. 22-30 ground control points were used for each set of processed photos. The final raster products have a gridded resolution of 250 m, are horizontally transformed to WGS84 Antarctic Polar Stereographic (EGSP: 3031), and are vertically projected to WGS84. The mean residual from the camera calibration for all 17 sets of TMA photos is less than 1 pixel and the average error for the ground control points from the bundle adjustment is 2.58 pixels or 2.77 m, -6.38 m, and 0.65 m in the X, Y, and Z in the directions, respectively. The resulting DEMs were co-registered to the REMA datasets over stable terrain (static elevations with slopes &lt;20º) and then differenced to determine the amount of geodetic mass change the outlet glaciers have undergone for ~60 years. To assess the error of the historical DEMs, elevation differences over stable terrain for values within the 95% confidence value were analyzed. The mean difference in elevation values was -3.311 m. The median is -1.895 m and the normalized median absolute deviation is 1.806 m. The total amount of elevation uplift due to isostatic adjustment for the region is ~3 mm/yr. Since it is well within the margin of error for the historical DEMs, it was omitted. Differencing the historical elevations from the present-day DEM reveals little change has occurred in the mass of these seven glaciers. The total mean elevation change for 1960-2017 is 0.331 m with Nimrod Glacier gaining the most in elevation with 6.68 m and Amundsen Glacier undergoing the most amount of thinning at 3.10 m. The results show that for these seven Transantarctic outlet glaciers south of 79º, the minor elevation changes they have experienced shows that they are in relatively stable condition. To date, this is the oldest elevation dataset of the Transantarctic Mountains.
DOI: 10.17632/zhd5xjh9px
title: Data for: A Science Map of Leadership Research between 1990 and 2017

description: Here are two high-resolution maps for the article entitled "A Computerized Approach to Understanding Leadership Research", as well as some raw files for VOSViewer to generate interactive maps.
DOI: 10.6084/m9.figshare.6120665.v2
title: Data from Counteracting estimation bias and social influence to improve the wisdom of crowds.

description: Files containing the raw data collected in this study.
DOI: 10.6084/m9.figshare.24213018.v2
title: Sharp zero-phonon lines of single organic molecules on a hexagonal boron-nitride surface - dataset

description: Single fluorescent molecules embedded in the bulk of host crystals have proven to be sensitive probes of the dynamics in their nano environment, thanks to their narrow (about 30-50 MHz or 0.1-0.2 μeV) optical linewidth of the 0-0 zero‑phonon line (0-0 ZPL) at cryogenic temperatures. However, the optical linewidths of the 0-0 ZPL have been found to increase dramatically as the single molecules are located closer to a surface or interface, while no 0-0 ZPL has been detected for single molecules on any surface. Here we study single terrylene molecules adsorbed on the surface of hexagonal boron-nitride (hBN) substrates. Our low-temperature results show that it is possible to observe the 0-0 ZPL of fluorescent molecules on a surface. We compare our results for molecules deposited on the surfaces of annealed and non-annealed hBN flakes and we see a marked improvement in the spectral stability of the emitters after annealing.
DOI: 10.17632/57yywzt7zx
title: Supplemental Material JCEM Ms. No. jc.2019-01883R1

description: Supplemental Material concerning the JCEM manuscript jc.2019-01883R1
DOI: 10.17632/k2ycvyn27v
title: Dataset for the study titled "Factors Associated with Mental Health Outcomes: Results from a Tertiary Referral Hospital in Lebanon during the COVID-19 Pandemic"

description: This study aimed to assess factors associated with mental health among Lebanese healthcare workers six months after the start of the COVID-19 pandemic. A cross-sectional study was conducted among HCWs at a tertiary hospital, in Lebanon between June and July 2020. The survey included basic demographics, data on exposure to COVID-19, data on preparedness to COVID-19 outbreak, during outbreak-perceptions of COVID-19 related risks/feelings, and mental health dimensions (anxiety and depression). Chi-squared test and Fisher’s exact test were used to understand the association among these variables. Findings suggested that altruistic acceptance of COVID-19 risks is higher among HCWs with positive exposure history to the virus and those with less depressive symptomatology.
DOI: 10.17632/vygrym46ph
title: lewis_creditorRights_data

description: These codes accompany manuscript "Creditor Rights, Collateral Reuse, and Credit Supply" by Brittany Almquist Lewis
DOI: 10.17632/wkdmgs9gd2
title:  Relación y contraste de lo ibérico en la iglesia Santiago de Curahuara de Carangas en Oruro (Bolivia) 

description: En este artículo se hablará de los contrastes y de las pervivencias con lo Ibérico en la iglesia Santiago de Curahuara de Carangas en Oruro (Bolivia), teniendo en cuenta que Ibérica fue nuestra colonización y que, como dice Marina Waisman “… no puede dejar de considerarse aquí la particular situación de la cultura española que durante varios siglos había logrado reunir en una compleja unidad los modos expresivos del mundo árabe y el cristiano, y que conservó esa admirable capacidad de pasar sin fracturas de uno a otro universo cultural, de uno a otro lenguaje artístico, hasta poco tiempo después del encuentro de las tierras americanas” (Waisman, 1993, p.90).

Para ello se realiza la investigación histórica del templo, el análisis urbano, el análisis de la arquitectura, de sus referentes y de las cualidades arquitectónicas interiores para terminar con las conclusiones, donde se enumeran las relaciones o pervivencias y los contrastes.
DOI: 10.6084/m9.figshare.12050892.v1
title: Additional file 5 of Using FFPE RNA-Seq with 12 marker genes to evaluate genotoxic and non-genotoxic rat hepatocarcinogens

description: Additional file 5: Appendix 5. PC1 and PC2 of FFPE-AAF, FFPE-CRE and previous Open TG-GATEs results [14].
DOI: 10.17632/tnzxs94vtr
title: Heart rate variability in adolescents with autistic spectrum disorder practicing a virtual reality using two different interaction devices

description: Individuals with Autism Spectrum Disorder (ASD) often exhibit dysregulation of the autonomic nervous system, as indicated by alterations in heart rate variability (HRV). HRV can be influenced by virtual reality (VR), which affects physiological responses due to its sensitivity to environmental and emotional stimuli. This study aimed to assess HRV in individuals with ASD before, during, and after VR-based tasks over a 10-day period, specifically examining HRV fluctuations in response to concrete (touchscreen) and abstract (webcam-based) interactions. Twenty-two male adolescents with ASD were randomly assigned to two groups based on the sequence of task exposure (beginning with either the concrete or abstract task).
DOI: 10.6084/m9.figshare.22638994.v1
title: TedSim simulated data (tutorial)

description: TedSim (Pan et al., Nucleic Acids Research 2022) simulated scRNA-seq dataset of a differentiation trajectory containing 8,448 cells and 500 genes, provided as an AnnData object. For each cell, the dataset includes a (raw-counts) gene expression vector as well as a lineage barcode. We use this dataset to demonstrate the moslin method for mapping lineage-traced single-cells across time points in our tutorial. <br> Additionally, the AnnData object contains - the simulated lineage tree. - cell assignments to the TedSim state tree. - precomputed lineage cost matrices. - a coupling of early to late cells based on the ground-truth simulated lineage tree. <br> Please cite the TedSim software: https://doi.org/10.1093/nar/gkac235
DOI: 10.17632/56m6bv8c7w
title: Dataset on Trombe Wall Application in a Factory Building

description: Data contains measurement record of an experimental Trombe Wall system on a factory building wall in Kalnciems, Latvia, including incident solar radiation, as well as temperature measurement at different spots. Continuous temperature measurements, taken at 10-minute intervals, encompassed outdoor and indoor temperatures, temperatures within the Trombe wall at 1.5 m and 5 m heights, and supply air temperature post-fan. Incident solar radiation (W/m2) onto the Trombe wall structure was also monitored. Experimental setup included detailed specifications of materials (timber framing, polycarbonate glazing, dark corrugated metal sheet backwall), sensors' positioning, and airflow control for comprehensive data collection.
DOI: 10.17632/mr79876xr2
title: The performance of the pattern search direct search method in solving load estimation problems

description: Accurately estimating load is essential for effective electric distribution planning, assets management, precise power flow predictions, accurate power losses calculations, and efficient integration of distributed energy resources. To facilitate this, a dataset was generated using Matlab to produce various simulations in the Open Electric Power Distribution System Simulator (OpenDSS), a widely used software in the electric distribution industry. These simulations were conducted on three typical distribution feeders (IEEE 13-bus, 37-bus, and 123-bus) that support studies in distribution planning, assets management, power flow predictions, power losses calculations, and distributed resource integration. The dataset includes individual demand profiles of residential, commercial, and industrial consumers specified for the three distribution feeders, comprising at least 96 distinct scenarios. An optimization method was developed using the obtained dataset, which employs the pattern search technique to estimate loads by optimizing specified objective functions and constraints. The load estimation quality was assessed for all three feeders, utilizing estimation quality indices proposed by the authors. These indices evaluated both the initial and proposed load estimation methods across the developed scenarios. Furthermore, the data provided in this article can be utilized for comparison with future load estimation studies, particularly regarding the quality of the method's results.
DOI: 10.17632/vt5rhnbspg
title: Real-World Driving Scenarios for Optimal System Design

description: In general, the kind of test case definition has a major impact on propulsion system development. Particularly, not only the standard test cases but also explicitly the limit ranges must be investigated, and distinctive profiles for real world driving cycles and boundary conditions must be defined and evaluated.
The provided data were used for the extensive simulation studies from the manuscript entitled: "HyFlex-ICE: Highly Flexible Internal Combustion Engines for Hybrid Vehicles " (doi:10.1007/978-3-658-42048-2_18).
For this research project, an investigation of the hybrid powertrain in realistic limiting ranges during vehicle life cycle to point out most challenging scenarios regarding the system limitations was assessed. Therefore, the four Real-World Driving Scenarios were derived and investigated in this project: (1) City Cycle, (2) Cross-Country Cycle, (3) German Highway Cycle, and (4) Mountain Drive Cycle. These driving scenarios capture all different challenges regarding the propulsion system. Besides aforementioned driving cycles, additional variation parameters are included for extensive powertrain testing to maximize coverage of real-world driving conditions. This ensures that operating points are approached that cannot be investigated in an analysis using standardized test procedures, e.g., WLTC. The examined and investigated variation parameters for real-world driving conditions are: (1) trailer, (2) cabin climatization, (3) initial state of charge, (4) ambient and cabin soak temperatures, (5) traffic conditions, (6) cabin occupants, and (7) driver type; resulting in a large matrix of results. Against this background, the speed profiles are provided over distance, as the speed over time profile changes depending on the choice of boundary conditions.
By providing these Real-World Driving Scenarios to the academic and industrial community the authors aim to further support the frontloading and virtual propulsion system development. Although these driving cycles were used for the design of a hybrid vehicle (PHEV), they can of course be used for the development of other propulsion concepts such as ICEVs, xHEVs, BEVs, or FCEVs.
DOI: 10.17632/rv3dtj7bgg
title: Survey Data showing the Influences of School Attachment Among Secondary School Students in Albania

description: Datasheet summary of the investigation conducted to determine the levels of School Attachment among secondary school students in Albania based on a five scaled assessment: 1) Students feelings for school, 2) Students interest in learning, 3) Students attitudes towards peers, 4) Students attitudes towards teachers, and 5) Students perception of the school. The study overall introduces findings of adolescent experiences at school, aiming at comprehension of attachment factors that nurtured or restrained senses of care, interest, respect, belonging, and trust; likewise conceptualizing the grade, gender, socio-economic status and demographic differences among adolescents. The overall target population of the present study was all public high school students in Albania. The target population was consisted of all 10th, 11th, and 12th grade students from public high schools in Albania. According to statistics given by INSTAT, the total number of pupils enrolled on upper secondary schools was 124.619 with 61.163 male and 63.456 female students. The accessible population was adolescents in grades 10th, 11th and 12th (N=1506; n=676 male and n= 830 female) with adequate distribution of demographics in Albania (N=6 prefectures out of 12).
DOI: 10.6084/m9.figshare.12661769.v1
title: A 2015 inventory of embodied carbon emissions for Chinese power transmission infrastructure projects

description: This study for the first time compiles an embodied carbon emissions inventory covering 191 typical power transmission infrastructure projects in China in 2015, including 145 types of alternating current (AC) transmission line projects, 37 typical AC substation projects, 8 typical direct current (DC) transmission line projects and 1 typical DC converter station project.
DOI: 10.6084/m9.figshare.28931417.v1
title: Computational data for "Observation of shuttling on the one-second timescale in a [10]cycloparaphenylene/C<sub>60</sub> [2]catenane"

description: [2]Catenanes comprising two identical binding sites are an excellent platform to study the kinetics of non-covalent interactions. In this work, we show that the “shuttling” of the [10]CPP nanohoop between two identical fullerene bis-adduct binding sites occurs with a rate of ca. 2 s<sup>-1</sup> at room temperature, placing it among the slowest π-π and dispersion-based shuttling processes reported to date. The catenanes were accessed <i>via</i> Glaser–Eglinton macrocyclization from fullerene bis-adduct precursors, which were purified by recycling chromatography, and characterized by variable-temperature <sup>1</sup>H NMR spectroscopy. Molecular dynamic simulations employing well-tempered metadynamics closely reproduce the experimental activation barrier (Δ<i>G</i><sup>‡</sup> ca. 70 kJ mol<sup>-1</sup>), offering insight into the nanohoop’s motion and metastable states along the shuttling pathway. Additionally, we present a sequential “Bingel followed by Bingel–Hirsch” strategy for orthogonal fullerene functionalization, enabling the synthesis of unsymmetrical C<sub>70</sub>–C<sub>60</sub> dyads. These findings expand our understanding of the kinetics of concave/convex p-p interactions and will inform the design of future mechanically interlocked molecules and materials.This Figshare repository contains input and output files related to the metadynamics described in the article.
DOI: 10.17632/2k8ks8h8sy
title: Urban Tree Cover Dataset (UTCD)

description: This dataset is composed of co-registered pair of 10m Sentinel-2 image and 2 m urban tree cover label image. Senitnel-2 image has cropped to patches with size of 128*128 pixels, label image has cropped to pathces with size of 640*640 pixels. Totally 1946 patches are obtained. In label images, the urban tree class and non-tree class are annotated, the statistics of which are 0.1321 billion and 0.6650 billion pixels, respectively. In order for training and testing of a deep neural network, the UTCD is preliminarily split into training set, validation set and test set, with patches of 1383, 195, 368 patch pairs, respectively.
DOI: 10.17632/6v67kc6yh4
title: R script for:"Protective role of parental mediation, social support and coping strategies on suicidality adolescent cyberbullying victims: A pilot study

description: This R script was used to perform statistical analyses to explore if social support, instructive parental mediation and cyberbullying coping strategies, are associated with lower suicide risk for adolescents victims of cyberbullying. Data was collected with an online questionnaire given to French-speaking adolescents aged 14 to 18 living in Quebec, Canada.
DOI: 10.17632/j487thdyjm
title: Aptian flysch in Central Tibet: Constrains on the timing of closure of the Bangong–Nujiang Tethyan Ocean

description: The dataset contains LA-ICP-MS zircon data, Hf isotopic data of the Late Mesozoic zircons, and detrital composition of turbiditic sandstone samples.
DOI: 10.17632/wkjn8jtfpm
title: VSR datasets

description: This is partial visual speech recognition dataset that collected by Xi'an Jiaotong University. All dataset can be found by email requests from dongxu_ma@stu.xjtu.edu.cn