cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9178238.v1
title: MOESM4 of Molecular characterization and functional analysis of the Schistosoma mekongi Ca2+-dependent cysteine protease (calpain)

description: Additional file 4: Table S3. Identification of rSmeCalp1 using liquid chromatography-tandem mass spectrometry (LC-MS/MS).
DOI: 10.6084/m9.figshare.9178181
title: Additional file 1: of Factors affecting medical file documentation during telephone triage at an emergency call centre: a cross-sectional study of out-of-hours home visits by general practitioners in France

description: Scores of determinants after the two-round RAND/UCLA method. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.9178181.v1
title: Additional file 1: of Factors affecting medical file documentation during telephone triage at an emergency call centre: a cross-sectional study of out-of-hours home visits by general practitioners in France

description: Scores of determinants after the two-round RAND/UCLA method. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.9178163
title: Genetic analysis of Iranian and Turkish red foxes (<i>Vulpes vulpes</i>) based on mitochondrial DNA (D-loop) sequences

description: Red fox (<i>Vulpes vulpes</i>) is known as a medium-sized game species in some parts of the Northern Hemisphere and a predator therewithal. In this study, we focused on Iranian (n = 14) and Turkish (n = 54) red foxes. Genetic analyses were performed by using mitochondrial D-loop sequences and revealed that there was a remarkable genetic variation within the Iranian and the Turkish populations. Intraspecific pairwise divergences within the Iranian and the Turkish red foxes ranged from 0.2% to 4% and from 0.3% to 3.1%, including 10 and 25 haplotypes, respectively. Also, a haplotype network was reconstructed by using the D-loop sequences obtained from the current study and conspecific populations throughout the species’ range. Based on the D-loop sequences, the red foxes were clustered into three main haplogroups (Palearctic basal haplotypes–African clade, Holarctic clade, Nearctic clade), in which the Iranian and the Turkish red foxes were grouped into two haplogroups (Palearctic basal haplotypes–African clade and Holarctic clade). The present study proposed that genetic differentiation occurs within the Iranian and the Turkish populations of the red fox, and it supported an ancient Middle Eastern–North African origin suggested by previous studies for modern red foxes due to the occurrence of some the Iranian and the Turkish haplotypes that were grouped into the Palearctic basal haplotypes–African clade.
DOI: 10.6084/m9.figshare.9178163.v1
title: Genetic analysis of Iranian and Turkish red foxes (<i>Vulpes vulpes</i>) based on mitochondrial DNA (D-loop) sequences

description: Red fox (<i>Vulpes vulpes</i>) is known as a medium-sized game species in some parts of the Northern Hemisphere and a predator therewithal. In this study, we focused on Iranian (n = 14) and Turkish (n = 54) red foxes. Genetic analyses were performed by using mitochondrial D-loop sequences and revealed that there was a remarkable genetic variation within the Iranian and the Turkish populations. Intraspecific pairwise divergences within the Iranian and the Turkish red foxes ranged from 0.2% to 4% and from 0.3% to 3.1%, including 10 and 25 haplotypes, respectively. Also, a haplotype network was reconstructed by using the D-loop sequences obtained from the current study and conspecific populations throughout the species’ range. Based on the D-loop sequences, the red foxes were clustered into three main haplogroups (Palearctic basal haplotypes–African clade, Holarctic clade, Nearctic clade), in which the Iranian and the Turkish red foxes were grouped into two haplogroups (Palearctic basal haplotypes–African clade and Holarctic clade). The present study proposed that genetic differentiation occurs within the Iranian and the Turkish populations of the red fox, and it supported an ancient Middle Eastern–North African origin suggested by previous studies for modern red foxes due to the occurrence of some the Iranian and the Turkish haplotypes that were grouped into the Palearctic basal haplotypes–African clade.
DOI: 10.6084/m9.figshare.9178112
title: Skin color affect the replacement of amalgam for composite in posterior restorations: a birth-cohort study

description: Abstract The aim of present study was to estimate the occurrence and associated factors for replacement of amalgam posterior restorations. A representative sample of all 5,914 births from the 1982 in Pelotas birth cohort study was prospectively investigated, and the posterior restorations were assessed at 24 (n = 720) and 31 years of age (n = 539). Individual-level variables, i.e., demographic characteristics, socio-economic factors, oral health conditions and use of dental services, were collected from different waves of the cohort. Tooth-level variables included dental group, estimated time in mouth of each amalgam restoration, and number of restored dental surfaces. Thus, 246 individuals presented 718 amalgam restorations at 24 years of age. After 7 seven years of follow-up, 18.9% of these restorations had been replaced with composite resins. Multilevel Poisson regression models showed that, compared to white individuals, blacks presented a lower risk of replacement of amalgam restorations for composite resins (IRR - 0.39 [0.16–0.95]). Individuals with high educational level at age 31 showed an increased likelihood of replacement of amalgam restorations. Therefore, skin color affects the replacement of amalgam for composite resin in posterior restorations.
DOI: 10.6084/m9.figshare.9178112.v1
title: Skin color affect the replacement of amalgam for composite in posterior restorations: a birth-cohort study

description: Abstract The aim of present study was to estimate the occurrence and associated factors for replacement of amalgam posterior restorations. A representative sample of all 5,914 births from the 1982 in Pelotas birth cohort study was prospectively investigated, and the posterior restorations were assessed at 24 (n = 720) and 31 years of age (n = 539). Individual-level variables, i.e., demographic characteristics, socio-economic factors, oral health conditions and use of dental services, were collected from different waves of the cohort. Tooth-level variables included dental group, estimated time in mouth of each amalgam restoration, and number of restored dental surfaces. Thus, 246 individuals presented 718 amalgam restorations at 24 years of age. After 7 seven years of follow-up, 18.9% of these restorations had been replaced with composite resins. Multilevel Poisson regression models showed that, compared to white individuals, blacks presented a lower risk of replacement of amalgam restorations for composite resins (IRR - 0.39 [0.16–0.95]). Individuals with high educational level at age 31 showed an increased likelihood of replacement of amalgam restorations. Therefore, skin color affects the replacement of amalgam for composite resin in posterior restorations.
DOI: 10.6084/m9.figshare.9178106
title: Infracommunities of bat flies (Diptera: Streblidae and Nycteribiidae) of bats (Mammalia: Chiroptera) in three conservation units in the State of Amapá, Brazil

description: Abstract: Diptera belonging to the families Nycteribiidae and Streblidae are hematophagous ectoparasites, exclusively of bats. The Amapá State is located in the North Region of Brazil. The Amapá represents one of with the lowest rates of deforestation in the country, with approximately 80% of the territory preserved. Within the State, there are conservation units, Floresta Nacional do Amapá (FNA), Parque Nacional Montanhas do Tumucumaque (PNMT) and Reserva de desenvolvimento Sustentável do Rio Iratapurú (RDSI). These areas represent priority areas for the Conservation of Amazonian Biodiversity. Recently in Amapá studied on the diversity and distribution of bats, however, there are no records of associated arthropod ectoparasites. Therefore, the objective was to describe the pattern of association of Nycteribiidae and Streblidae species on bats in three protected areas of Amapá. Bats were collected through mist nets, where each host had its body visually revised and the Diptera collected were identified through a specific bibliography. One thousand and eighty- six individuals of bats flies were identified, distributed in 52 species (Streblidae = 49 and Nycteribiidae = three). Among the three infracommunities, the PNMT infracommunities was the largest found with abundance and richness of bats flies. All species found, represent new occurrences for the Amapá, being these, 18 new records for the North Region and seven new records for Brazil.
DOI: 10.6084/m9.figshare.9178109
title: PREDICTION OF 100 METERS SPRINT PERFORMANCE BASED ON FIELD TEST

description: ABSTRACT Introduction: The 100-meter dash (100 m) event holds particular appeal. Coaches and researchers seek to understand the determinants of performance in this task. Although information has been produced over the years, it is not fully applied by coaches who generally assess the success of employed training methods through objective field tests, such as 60 m dash test performance. Objective: Investigate 100 m performance based on 60 m performance. Methods: Two hundred and forty six men and 153 women divided into two subgroups were evaluated for estimation (Fvalidation; n=123 and Mvalidation; n=204) and validation of predictive models (Fcross-validation; n=30 and Mcross-validation; n=42) for 100 m dash performance (time take to cover 100 m). Partial time was measured based on the 100 m distance marked previously every 10 meters from the starting line on both sides of the track. The predictive models were based on the interval in the 60 meters with a time interval of 10-10 m. Results: Magnitude of correlation was very high. High coefficients of determination and differences of no statistical significance (p
DOI: 10.6084/m9.figshare.9178106.v1
title: Infracommunities of bat flies (Diptera: Streblidae and Nycteribiidae) of bats (Mammalia: Chiroptera) in three conservation units in the State of Amapá, Brazil

description: Abstract: Diptera belonging to the families Nycteribiidae and Streblidae are hematophagous ectoparasites, exclusively of bats. The Amapá State is located in the North Region of Brazil. The Amapá represents one of with the lowest rates of deforestation in the country, with approximately 80% of the territory preserved. Within the State, there are conservation units, Floresta Nacional do Amapá (FNA), Parque Nacional Montanhas do Tumucumaque (PNMT) and Reserva de desenvolvimento Sustentável do Rio Iratapurú (RDSI). These areas represent priority areas for the Conservation of Amazonian Biodiversity. Recently in Amapá studied on the diversity and distribution of bats, however, there are no records of associated arthropod ectoparasites. Therefore, the objective was to describe the pattern of association of Nycteribiidae and Streblidae species on bats in three protected areas of Amapá. Bats were collected through mist nets, where each host had its body visually revised and the Diptera collected were identified through a specific bibliography. One thousand and eighty- six individuals of bats flies were identified, distributed in 52 species (Streblidae = 49 and Nycteribiidae = three). Among the three infracommunities, the PNMT infracommunities was the largest found with abundance and richness of bats flies. All species found, represent new occurrences for the Amapá, being these, 18 new records for the North Region and seven new records for Brazil.
DOI: 10.6084/m9.figshare.9178103
title: OPHTHALMOLOGIC EVALUATION IN PROFESSIONAL MALE SOCCER PLAYERS IN BRAZIL

description: ABSTRACT Introduction: Soccer is the most popular sport in Brazil and worldwide, but there is insufficient data on the eye health of soccer players, and eye conditions may affect the well-being and performance of these athletes. Objective: To perform an ocular evaluation of a representative sample of professional soccer players from Brazil. Methods: This was a cross-sectional study conducted over four consecutive years (2009-2012) at a single professional soccer club in Brazil. The ophthalmology evaluation was performed by the same ophthalmologist in each sample. Prior to the ophthalmology evaluation, all participants filled out a questionnaire to provide the following demographic data: age, position, use of contact lenses or ophthalmic drugs, symptoms, previous ocular surgery, and date of the last ophthalmology evaluation. Visual acuity, intraocular pressure (IOP) and color vision were tested during the ophthalmologic examination, and ophthalmoscopy and biomicroscopy exams were performed. Results: One hundred and twenty bilateral ophthalmology evaluations were performed in 84 professional soccer players between 2009 and 2012. Pinguecula and pterygium were the most common conditions found in the athletes’ biomicroscopy exams, corresponding to 63% (38/60) and 17% (10/60) of abnormalities, respectively. In the contrast sensitivity evaluation, only one athlete was color blind. No significant associations were found between the position of the athlete and the results of the biomicroscopy and ophthalmoscopy exams. Conclusion: Despite the high prevalence of abnormalities found in the ophthalmology evaluation, most refractive abnormalities did not require correction, and the biomicroscopy abnormalities were mostly benign. Level III; Study of non-consecutive patients.
DOI: 10.6084/m9.figshare.9178091
title: icnn_tf example data

description: Data for the example code of icnn_tf.
DOI: 10.6084/m9.figshare.9178082.v1
title: Supplementary Figures of manuscript " Fine mapping using whole-genome sequencing confirms anti-Müllerian hormone as a major gene for sex determination in farmed Nile tilapia (Oreochromis niloticus L.)"

description: Genetic differentiation between male and female sub-populations in the sex-determining region. F<sub>ST</sub> estimates between males and females within chromosome 23
DOI: 10.6084/m9.figshare.9178091.v1
title: icnn_tf example data

description: Data for the example code of icnn_tf.
DOI: 10.6084/m9.figshare.9178091.v2
title: icnn_tf example data

description: Data for the example code of icnn_tf.
DOI: 10.5517/ccdc.csd.cc1zj66x
title: CCDC 1832819: Experimental Crystal Structure Determination

description: Related Article: Takumi Nakanishi, Yuta Hori, Shuqi Wu, Hiroyasu Sato, Atsushi Okazawa, Norimichi Kojima, Yusuke Horie, Hajime Okajima, Akira Sakamoto, Yoshihito Shiota, Kazunari Yoshizawa, Osamu Sato|2020|Angew.Chem.,Int.Ed.|59|14781|doi:10.1002/anie.202006763
DOI: 10.5517/ccdc.csd.cc1zj67y
title: CCDC 1832820: Experimental Crystal Structure Determination

description: Related Article: Takumi Nakanishi, Yuta Hori, Shuqi Wu, Hiroyasu Sato, Atsushi Okazawa, Norimichi Kojima, Yusuke Horie, Hajime Okajima, Akira Sakamoto, Yoshihito Shiota, Kazunari Yoshizawa, Osamu Sato|2020|Angew.Chem.,Int.Ed.|59|14781|doi:10.1002/anie.202006763
DOI: 10.6084/m9.figshare.9178061
title: Genomic sequencing of Phyllosticta citriasiana provide insight into its conservation and diversification with other closely related Phyllosticta species associated with citrus

description: Phyllosticta citriasiana related annotation
DOI: 10.5517/ccdc.csd.cc1zj68z
title: CCDC 1832821: Experimental Crystal Structure Determination

description: Related Article: Takumi Nakanishi, Yuta Hori, Shuqi Wu, Hiroyasu Sato, Atsushi Okazawa, Norimichi Kojima, Yusuke Horie, Hajime Okajima, Akira Sakamoto, Yoshihito Shiota, Kazunari Yoshizawa, Osamu Sato|2020|Angew.Chem.,Int.Ed.|59|14781|doi:10.1002/anie.202006763
DOI: 10.6084/m9.figshare.9178091.v4
title: icnn_tf example data

description: Data for the example code of icnn_tf.
DOI: 10.6084/m9.figshare.9178091.v3
title: icnn_tf example data

description: Data for the example code of icnn_tf.
DOI: 10.6084/m9.figshare.9178007
title: Dataset for: Cognitive functioning in glioma patients is related to functional connectivity measures of the non-tumoural hemisphere

description: Previous studies have shown that cognitive functioning in brain tumour patients is associated with the functional network characteristics of specific resting state networks or with whole brain network characteristics. These studies, however, did not acknowledge the functional contribution of areas in the contralesional, non-tumoural hemisphere, even though these healthy remote areas likely play a critical role in compensating for the loss of function in damaged tissue. In the current study, we examined whether there is an association between cognitive performance and functional network features of the contralesional hemisphere of glioma patients. We found that local efficiency of the contralesional hemisphere was associated with performance on the Reaction Time domain, whereas contralesional assortativity was associated with Complex Attention and Cognitive Flexibility scores. Our results suggest that a less segregated organization of the contralesional hemisphere is associated with better Reaction Time scores, whereas a better spread of information over the contralesional hemisphere through mutually interconnected contralesional hubs, is associated with better Cognitive Flexibility and better Complex Attention scores. These findings urge researchers to recognize the functional contribution of remote, undamaged regions and to focus more on the graph metrics of the contralesional hemisphere in the search for predictors of cognitive functioning in brain tumour patients.
DOI: 10.6084/m9.figshare.9178007.v1
title: Dataset for: Cognitive functioning in glioma patients is related to functional connectivity measures of the non-tumoural hemisphere

description: Previous studies have shown that cognitive functioning in brain tumour patients is associated with the functional network characteristics of specific resting state networks or with whole brain network characteristics. These studies, however, did not acknowledge the functional contribution of areas in the contralesional, non-tumoural hemisphere, even though these healthy remote areas likely play a critical role in compensating for the loss of function in damaged tissue. In the current study, we examined whether there is an association between cognitive performance and functional network features of the contralesional hemisphere of glioma patients. We found that local efficiency of the contralesional hemisphere was associated with performance on the Reaction Time domain, whereas contralesional assortativity was associated with Complex Attention and Cognitive Flexibility scores. Our results suggest that a less segregated organization of the contralesional hemisphere is associated with better Reaction Time scores, whereas a better spread of information over the contralesional hemisphere through mutually interconnected contralesional hubs, is associated with better Cognitive Flexibility and better Complex Attention scores. These findings urge researchers to recognize the functional contribution of remote, undamaged regions and to focus more on the graph metrics of the contralesional hemisphere in the search for predictors of cognitive functioning in brain tumour patients.
DOI: 10.5517/ccdc.csd.cc24f0h3
title: CCDC 1978714: Experimental Crystal Structure Determination

description: Related Article: Takumi Nakanishi, Yuta Hori, Shuqi Wu, Hiroyasu Sato, Atsushi Okazawa, Norimichi Kojima, Yusuke Horie, Hajime Okajima, Akira Sakamoto, Yoshihito Shiota, Kazunari Yoshizawa, Osamu Sato|2020|Angew.Chem.,Int.Ed.|59|14781|doi:10.1002/anie.202006763
DOI: 10.5517/ccdc.csd.cc24f0j4
title: CCDC 1978715: Experimental Crystal Structure Determination

description: Related Article: Takumi Nakanishi, Yuta Hori, Shuqi Wu, Hiroyasu Sato, Atsushi Okazawa, Norimichi Kojima, Yusuke Horie, Hajime Okajima, Akira Sakamoto, Yoshihito Shiota, Kazunari Yoshizawa, Osamu Sato|2020|Angew.Chem.,Int.Ed.|59|14781|doi:10.1002/anie.202006763
DOI: 10.6084/m9.figshare.9175157
title: Sediment Oxygen and Sulfide Microprofiles in Extant and Restored Marshes of Jamaica Bay (New York, NY, USA)

description: This project contains field data from four restored marshes (restored 2003, 2006, 2010, and 2012) and two extant marshes in Jamaica Bay (New York, NY, USA). Methods used to collect and analyze these data are available in a manuscript, "Marsh plants enhance coastal marsh resilience by changing sediment redox conditions in an urban, eutrophic estuary," currently under review.<br>"20171016_O2Profiles_All.csv" and "20171016_H2SProfiles_All.csv" contain vertical microprofiles of O<sub>2</sub> and H<sub>2</sub>S concentrations in sediment cores from each sites. Microprofiles were measured using a motorized microprofiling system.<br>"h2s_parameters.csv" and "o2_parameters.csv" contain parameters from logistic fits of microprofile data. These parameters describe: (1) maximum concentrations, (2) rates of increase/decline, and (3) depths of maximum increase/decline.<br>"20180627_MicroprofileCores_SedimentData.csv" contains sediment characteristics (bulk density, porosity, organic content) for each sediment core.<br><br>"20180627_MicroprofileCores_PlantData.csv" contains aboveground and belowground plant characteristics for <i>Spartina alterniflora</i> in the cores.<br><br>"20180730_Inundation_summarydata.csv" contains daily tidal inundation data for each location.<br>"depthProfiler_app.R" is a shiny app that may be run locally to visualize logistic fits to all profile data. Running the app locally will require the <i>shiny</i>, <i>dplyr</i>, and <i>ggplot2 </i>packages.
DOI: 10.5517/ccdc.csd.cc24p725
title: CCDC 1986606: Experimental Crystal Structure Determination

description: Related Article: Yifan Gu, Jia-Jia Zheng, Ken-ichi Otake, Kunihisa Sugimoto, Nobuhiko Hosono, Shigeyoshi Sakaki, Fengting Li, Susumu Kitagawa|2020|Angew.Chem.,Int.Ed.|59|15517|doi:10.1002/anie.202003186
DOI: 10.6084/m9.figshare.9175157.v1
title: Sediment Oxygen and Sulfide Microprofiles in Extant and Restored Marshes of Jamaica Bay (New York, NY, USA)

description: This project contains field data from four restored marshes (restored 2003, 2006, 2010, and 2012) and two extant marshes in Jamaica Bay (New York, NY, USA). Methods used to collect and analyze these data are available in a manuscript, "Marsh plants enhance coastal marsh resilience by changing sediment redox conditions in an urban, eutrophic estuary," currently under review.<br>"20171016_O2Profiles_All.csv" and "20171016_H2SProfiles_All.csv" contain vertical microprofiles of O2 and H2S concentrations in sediment cores from each sites. Microprofiles were measured using a motorized microprofiling system.<br>"h2s_parameters.csv" and "o2_parameters.csv" contain parameters from logistic fits of microprofile data. These paramters describe: (1) maximum concentrations, (2) rates of increase/decline, and (3) depths of maximum increase/decline.<br>"20180627_MicroprofileCores_SedimentData.csv" contains sediment characteristics (bulk density, porosity, organic content) for each sediment core.<br><br>"20180627_MicroprofileCores_PlantData.csv" contains aboveground and belowground plant characteristics for <i>Spartina alterniflora</i> in the cores.<br><br>"20180730_Inundation_summarydata.csv" contains daily tidal inundation data for each location.