cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7693346
title: Additional file 2: of Uncovering mechanisms behind mosquito seasonality by integrating mathematical models and daily empirical population data: Culex pipiens in the UK

description: Counts of each life stage, along with data on larval identification and the temperatures in the water butts. (XLSX 270 kb)
DOI: 10.6084/m9.figshare.7693346.v1
title: Additional file 2: of Uncovering mechanisms behind mosquito seasonality by integrating mathematical models and daily empirical population data: Culex pipiens in the UK

description: Counts of each life stage, along with data on larval identification and the temperatures in the water butts. (XLSX 270 kb)
DOI: 10.7284/122149
title: GNSS (Global Navigation Satellite System) data collected during research cruise AT33-02 using a C&C C-Nav 2050G instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122152
title: Meteorological Station data collected during research cruise AT33-02 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122153
title: Meteorological Station data collected during research cruise AT33-02 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122154
title: Radiometer data collected during research cruise AT33-02 using a Eppley PIR instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7693295
title: Additional file 1: of Disease progression in women with X-linked adrenoleukodystrophy is slow

description: Individual clinical data: mutations, symptoms and signs. The presence of symptoms or signs is categorized in 1 ‘Yes’ and 0 ‘No’. The duration of neurological symptoms is categorized in 0 ‘ No myelopathy ’, 1 ‘ Neurological symptoms for ≤ 10 years ’ and 2 ‘ Neurological symptoms for &gt; 10 years ’. (XLS 50 kb)
DOI: 10.6084/m9.figshare.7693298
title: Additional file 2: of Disease progression in women with X-linked adrenoleukodystrophy is slow

description: Individual clinical data: SF-36, EDSS and ALDS values. SF-36 values were compared with norm values for the Dutch population and corrected for gender and age. The SF-36 subdomain scores are expressed in Z scores, ranging from − 4 (lowest quality of life) to + 4 (highest quality of life). The SF-36 summary scores were linearly transformed to a range from 0 (lowest quality of life) to 100 (highest quality of life), with a mean of 50 and standard deviation of 10. The EDSS ranges from 0 (normal) to 10 (death). The ALDS scores are regression coefficients which were linearly transformed for interpretation, ranging from 10 (highest level of disability) to 89.47 (lowest level of disability). ALDS = AMC Linear Disability Scale; EDSS = Expanded Disability Status Scale; MCS = mental component summary; PCS = physical component summary; SF-36 = Short Form (36) Health Survey. (XLSX 21 kb)
DOI: 10.7284/122155
title: Radiometer data collected during research cruise AT33-02 using a Eppley PSP instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7693295.v1
title: Additional file 1: of Disease progression in women with X-linked adrenoleukodystrophy is slow

description: Individual clinical data: mutations, symptoms and signs. The presence of symptoms or signs is categorized in 1 ‘Yes’ and 0 ‘No’. The duration of neurological symptoms is categorized in 0 ‘ No myelopathy ’, 1 ‘ Neurological symptoms for ≤ 10 years ’ and 2 ‘ Neurological symptoms for &gt; 10 years ’. (XLS 50 kb)
DOI: 10.6084/m9.figshare.7693298.v1
title: Additional file 2: of Disease progression in women with X-linked adrenoleukodystrophy is slow

description: Individual clinical data: SF-36, EDSS and ALDS values. SF-36 values were compared with norm values for the Dutch population and corrected for gender and age. The SF-36 subdomain scores are expressed in Z scores, ranging from − 4 (lowest quality of life) to + 4 (highest quality of life). The SF-36 summary scores were linearly transformed to a range from 0 (lowest quality of life) to 100 (highest quality of life), with a mean of 50 and standard deviation of 10. The EDSS ranges from 0 (normal) to 10 (death). The ALDS scores are regression coefficients which were linearly transformed for interpretation, ranging from 10 (highest level of disability) to 89.47 (lowest level of disability). ALDS = AMC Linear Disability Scale; EDSS = Expanded Disability Status Scale; MCS = mental component summary; PCS = physical component summary; SF-36 = Short Form (36) Health Survey. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.7693289
title: Additional file 6: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

description: Tissue specific expression of P450 with FPKM count. Highly expressed tomato P450 genes from heat map with their FPKM count. (XLSX 11 kb)
DOI: 10.7284/122166
title: Multiplexed data collected during research cruise AT33-03 using a WHOI Calliope instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7693280
title: Additional file 5: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

description: Promoter analysis Table. Promoter analysis of all the protein coding genes in tomato with promoter motifs count. (XLSX 81994 kb)
DOI: 10.6084/m9.figshare.7693289.v1
title: Additional file 6: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

description: Tissue specific expression of P450 with FPKM count. Highly expressed tomato P450 genes from heat map with their FPKM count. (XLSX 11 kb)
DOI: 10.7284/122160
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AT33-03 using a Hawaii UHDAS instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7693277
title: Additional file 4: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

description: Intron analysis summary. Data for Intron map constructions and distribution. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.7693280.v1
title: Additional file 5: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

description: Promoter analysis Table. Promoter analysis of all the protein coding genes in tomato with promoter motifs count. (XLSX 81994 kb)
DOI: 10.6084/m9.figshare.7693268
title: Additional file 2: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

description: Table of primer sequences used in experimentation. Primer sequences of genes used RT-qPCR analysis. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.7693277.v1
title: Additional file 4: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

description: Intron analysis summary. Data for Intron map constructions and distribution. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.7693265
title: Additional file 1: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

description: Table of SlP450 summary fileÂ 233 SlP450 sequences (genomic, transcript, CDS and protein) are provided with the universal names, Sol genomics id and phylogenetic groups. The NCBI accession numbers of Arabidopsis, Poplar and Potato P450 protein sequences used in phylogeny are listed. The sheet 2 represents percent identity matrix of all the SlP450 proteins. (XLSX 197 kb)
DOI: 10.7284/122159
title: Expendable Probe data collected during research cruise AT33-03 using a Sippican MK12 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7693265.v1
title: Additional file 1: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

description: Table of SlP450 summary fileÂ 233 SlP450 sequences (genomic, transcript, CDS and protein) are provided with the universal names, Sol genomics id and phylogenetic groups. The NCBI accession numbers of Arabidopsis, Poplar and Potato P450 protein sequences used in phylogeny are listed. The sheet 2 represents percent identity matrix of all the SlP450 proteins. (XLSX 197 kb)
DOI: 10.6084/m9.figshare.7693268.v1
title: Additional file 2: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

description: Table of primer sequences used in experimentation. Primer sequences of genes used RT-qPCR analysis. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.7693262.v1
title: Additional file 8: of On the estimation of population cause-specific mortality fractions from in-hospital deaths

description: Bangladesh and Philippines cause-specific mortality fractions for death with wealth variables. Cause-specific mortality fractions for the death per hospital death model with wealth score, wealth quintile, wealth indicator, or no wealth. (XLSX 12 kb)
DOI: 10.7284/122158
title: Fluorometer data collected during research cruise AT33-03 using a WET Labs WETStar instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7693253
title: Additional file 7: of On the estimation of population cause-specific mortality fractions from in-hospital deaths

description: Bangladesh and Philippines wealth index calculation. Demographic covariates used to calculate a wealth index using principal component analysis (PCA) for Bangladesh and the Philippines. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7693253.v1
title: Additional file 7: of On the estimation of population cause-specific mortality fractions from in-hospital deaths

description: Bangladesh and Philippines wealth index calculation. Demographic covariates used to calculate a wealth index using principal component analysis (PCA) for Bangladesh and the Philippines. (XLSX 13 kb)
DOI: 10.7284/122157
title: GNSS (Global Navigation Satellite System) data collected during research cruise AT33-03 using a C&C C-Nav 2050G instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7693241
title: Additional file 5: of On the estimation of population cause-specific mortality fractions from in-hospital deaths

description: Cause of death map. Cause of death mapping between the broad cause categories, Tariff 2.0 cause categories, and Global Burden of Disease cause categories. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.7693241.v1
title: Additional file 5: of On the estimation of population cause-specific mortality fractions from in-hospital deaths

description: Cause of death map. Cause of death mapping between the broad cause categories, Tariff 2.0 cause categories, and Global Burden of Disease cause categories. (XLSX 19 kb)
DOI: 10.7284/122162
title: Meteorological Station data collected during research cruise AT33-03 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122163
title: Meteorological Station data collected during research cruise AT33-03 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.25375/uct.12412724
title: Determining electrocardiography training priorities for medical students using a modified Delphi method

description: The aim of this modified Delphi study was to establish consensus amongst content and context experts on an ECG curriculum for medical students. The Delphi technique, an established method of obtaining consensus, was used to develop an undergraduate ECG curriculum. Specialists involved in ECG teaching were invited to complete three rounds of online surveys. An undergraduate ECG curriculum was formulated from the topics of ECG instruction for which consensus (i.e. ≥75% agreement) was achieved amongst the expert panel.
DOI: 10.7284/122161
title: Multibeam Echosounder data collected during research cruise AT33-03 using a Kongsberg EM122 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122164
title: Radiometer data collected during research cruise AT33-03 using a Eppley PIR instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122165
title: Radiometer data collected during research cruise AT33-03 using a Eppley PSP instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122176
title: Multiplexed data collected during research cruise AT34 using a WHOI Calliope instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122169
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AT34 using a Hawaii UHDAS instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122170
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AT34 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7693148
title: Additional file 1: of Psychometric properties of the Epworth sleepiness scale in Ethiopian university students

description: Supplementary data. (SAV 10 kb)
DOI: 10.6084/m9.figshare.7693148.v1
title: Additional file 1: of Psychometric properties of the Epworth sleepiness scale in Ethiopian university students

description: Supplementary data. (SAV 10 kb)
DOI: 10.7284/122168
title: Fluorometer data collected during research cruise AT34 using a WET Labs WETStar instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122167
title: GNSS (Global Navigation Satellite System) data collected during research cruise AT34 using a C&C C-Nav 2050G instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7693121
title: Additional file 7: of Transcriptome, proteome and draft genome of Euglena gracilis

description: Table S5. Surface/endomembrane proteome predictions. Panel A: Predicted numbers of ORFs encoded in the E. gracilis predicted proteome that contain a signal sequence (SS) together with additional determinants for stable membrane attachment (i.e. a glycosylphosphatidylinositol anchor (GPI) or trans-membrane domain (TMD)). Panel B: Frequency distribution of predicted Euglena-specific surface gene families, shown as number of families according to size. 608 (87.5%). Euglena-specific surface genes are predicted to be single-copy, whereas five families are predicted to have more than seven members. Panel C: PHYRE 2.0 summary results for an element of each multi-copy family (n &gt; 4) of E. gracilis, including family size, residues matching the model and correspondent coverage of the sequence, percentage identity, confidence of prediction, and description of top template model. (XLXS 44 kb)
DOI: 10.6084/m9.figshare.7693121.v1
title: Additional file 7: of Transcriptome, proteome and draft genome of Euglena gracilis

description: Table S5. Surface/endomembrane proteome predictions. Panel A: Predicted numbers of ORFs encoded in the E. gracilis predicted proteome that contain a signal sequence (SS) together with additional determinants for stable membrane attachment (i.e. a glycosylphosphatidylinositol anchor (GPI) or trans-membrane domain (TMD)). Panel B: Frequency distribution of predicted Euglena-specific surface gene families, shown as number of families according to size. 608 (87.5%). Euglena-specific surface genes are predicted to be single-copy, whereas five families are predicted to have more than seven members. Panel C: PHYRE 2.0 summary results for an element of each multi-copy family (n &gt; 4) of E. gracilis, including family size, residues matching the model and correspondent coverage of the sequence, percentage identity, confidence of prediction, and description of top template model. (XLXS 44 kb)
DOI: 10.7284/122172
title: Meteorological Station data collected during research cruise AT34 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7693100
title: Additional file 4: of Transcriptome, proteome and draft genome of Euglena gracilis

description: Table S3. Analysis of GO term frequency, domains and large orthogroup architecture. Sheet 1: GO terms in orthogroups. The sheet has two subtables. In one the GO terms represented above 5% in each orthogroup are shown - all other GO terms with less than 5% frequency have been omitted as the numbers of sequences included are very small. The second shows the number of annotated and non-annotated sequences of each taxonomic group selected. Yellow highlight shows the GO terms of interest belonging to molecular process that are analyzed in this study. Sheet 2: Conserved domains from NCBI database (CDD) detected in those sequences with the GO terms of interest highlighted in sheet 1. Output provided by CDD searches. For the sequence identifiers, note that first field separated with “_”, represents the taxonomic group to which it belongs. Sheet 3: Incidence of conserved domains detected in CDD searches and orthogroups. This table summarizes the output of the CDD searches. Gray highlight represents the conserved domains in parallel with the respective orthogroup (OG number) of the sequences for which we provide phylogenetic analyses. Sheet 4: Data for annotation of NCIII tree. Trans-membrane domains and conserved domains. Sheet 5: Data for annotation of REC tree. Trans-membrane domains and conserved domains. (XLSX 127 kb)
DOI: 10.6084/m9.figshare.7693106
title: Additional file 5: of Transcriptome, proteome and draft genome of Euglena gracilis

description: Table S4. Accessions of genes associated with specific cellular functions. Each worksheet contains details of the orthologs and their accession numbers for a specific subset of predicted ORFs associated with an indicated cellular function, metabolic process or organelle. The first two sheets show the overall predictions (all annotated transcripts) and a summary graphic (Distributions). (XLSX 870 kb)
DOI: 10.6084/m9.figshare.7693100.v1
title: Additional file 4: of Transcriptome, proteome and draft genome of Euglena gracilis

description: Table S3. Analysis of GO term frequency, domains and large orthogroup architecture. Sheet 1: GO terms in orthogroups. The sheet has two subtables. In one the GO terms represented above 5% in each orthogroup are shown - all other GO terms with less than 5% frequency have been omitted as the numbers of sequences included are very small. The second shows the number of annotated and non-annotated sequences of each taxonomic group selected. Yellow highlight shows the GO terms of interest belonging to molecular process that are analyzed in this study. Sheet 2: Conserved domains from NCBI database (CDD) detected in those sequences with the GO terms of interest highlighted in sheet 1. Output provided by CDD searches. For the sequence identifiers, note that first field separated with “_”, represents the taxonomic group to which it belongs. Sheet 3: Incidence of conserved domains detected in CDD searches and orthogroups. This table summarizes the output of the CDD searches. Gray highlight represents the conserved domains in parallel with the respective orthogroup (OG number) of the sequences for which we provide phylogenetic analyses. Sheet 4: Data for annotation of NCIII tree. Trans-membrane domains and conserved domains. Sheet 5: Data for annotation of REC tree. Trans-membrane domains and conserved domains. (XLSX 127 kb)
DOI: 10.6084/m9.figshare.7693106.v1
title: Additional file 5: of Transcriptome, proteome and draft genome of Euglena gracilis

description: Table S4. Accessions of genes associated with specific cellular functions. Each worksheet contains details of the orthologs and their accession numbers for a specific subset of predicted ORFs associated with an indicated cellular function, metabolic process or organelle. The first two sheets show the overall predictions (all annotated transcripts) and a summary graphic (Distributions). (XLSX 870 kb)
DOI: 10.7284/122173
title: Meteorological Station data collected during research cruise AT34 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7693091
title: Additional file 3: of Transcriptome, proteome and draft genome of Euglena gracilis

description: Table S2. Analysis of phylogenetic relationships of E. gracilis proteins. The sheet contains three tables. First table summarizes the taxon composition of the custom database used for the search of homologues of E. gracilis proteins. Second table summarizes the number of items in each step and the pipeline. The third table gives exact numbers of trees that fell into defined taxonomic bins. (XLSX 16396 kb)
DOI: 10.6084/m9.figshare.7693091.v1
title: Additional file 3: of Transcriptome, proteome and draft genome of Euglena gracilis

description: Table S2. Analysis of phylogenetic relationships of E. gracilis proteins. The sheet contains three tables. First table summarizes the taxon composition of the custom database used for the search of homologues of E. gracilis proteins. Second table summarizes the number of items in each step and the pipeline. The third table gives exact numbers of trees that fell into defined taxonomic bins. (XLSX 16396 kb)
DOI: 10.7284/122171
title: Multibeam Echosounder data collected during research cruise AT34 using a Kongsberg EM122 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7693082
title: Additional file 2: of Transcriptome, proteome and draft genome of Euglena gracilis

description: Table S1. Raw data for proteomics and transcriptomics of E. gracilis under adaptive conditions. Cells were grown under dark or light conditions as described in methods and subjected to protein or RNA extraction and analysed by mass spectrometry or RNAseq. Each condition was analysed in triplicate (n = 3) and data for individual samples together with the merged data are provided (Transcripts, Proteome), together with BLAST annotation of altered transcripts (additional tabs). (XLSX 19876 kb)