cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.vatxsv
title: Occurrence Download

description: A dataset containing 4781 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chromidotilapia linkei, Coptodon kottae, Benitochromis nigrodorsalis, Tetraodon pustulatus, Denticeps clupeoides, Procatopus aberrans, Ivindomyrus opdenboschi, Hippopotamyrus castor, Aphyosemion ahli, Aphyosemion calliurum, Hemichromis elongatus, Labeobarbus lucius, Microthrissa minuta, Fundulopanchax avichang, Fundulopanchax oeseri, Chromidotilapia melaniae, Clarias agboyiensis, Odaxothrissa mento, Malapterurus cavalliensis, Clarias buettikoferi, Fundulopanchax kamdemi, Brycinus batesii, Konia dikume, Konia eisentrauti, Myaka myaka, Pungu maclareni, Stomatepia mongo, Stomatepia pindu, Coptodon bakossiorum, Coptodon bemini, Coptodon bythobates, Coptodon flava, Coptodon gutturosa, Coptodon imbriferna, Coptodon snyderae, Coptodon spongotroktis, Coptodon thysi, Coptodon deckerti, Paramphilius firestonei, Coptodon coffea, Hylopanchax stictopleuron, Haplochromis fasciatus, Pareutropius buffei, Chiloglanis niger, Pelvicachromis pulcher, Fundulopanchax gardneri, Fundulopanchax scheeli, Fundulopanchax gularis, Fundulopanchax ndianus, Aphyosemion bivittatum, Phractura clauseni, Nannocharax latifasciatus, Erpetoichthys calabaricus, Amphilius korupi, Chrysichthys longidorsalis, Coptodon margaritacea, Parauchenoglanis longiceps, Chrysichthys nyongensis, Schilbe nyongensis, Aphyosemion thysi, Chromidotilapia elongata, Enteromius rubrostigma, Schilbe djeremi, Campylomormyrus phantasticus, Mastacembelus sanagali, Mastacembelus seiteri, Notoglanidium depierrei, Thrattidion noctivagus, Epiplatys sangmelinensis, Mastacembelus shiloangoensis, Isichthys henryi, Parananochromis elobatus, Aphyosemion obscurum, Aphyosemion amoenum, Aphyosemion zygaima, Fundulopanchax robertsoni, Marcusenius mento, Nannopetersius lamberti, Afronandus sheljuzhkoi, Heterobranchus isopterus, Chrysichthys maurus, Schilbe mandibularis, Marcusenius ussheri, Marcusenius furcidens, Petrocephalus pellegrini, Wallaceochromis humilis, Malapterurus leonensis, Synodontis waterloti, Anomalochromis thomasi, Marcusenius senegalensis, Raiamas nigeriensis, Enteromius sublineatus, Tilapia brevimanus, Enteromius pobeguini, Synodontis ocellifer, Sarotherodon occidentalis)",
 "HasCoordinate is true",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 4781 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057624-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nut8dm
title: Occurrence Download

description: A dataset containing 6090 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-61.26158 -22.97257,-61.43885 -23.39041,-61.16662 -23.52336,-61.01468 -23.70695,-60.85641 -23.82724,-60.76145 -23.90321,-60.55253 -23.90954,-60.13469 -24.04882,-59.88779 -24.17543,-59.64722 -24.25774,-59.39398 -24.45399,-59.14708 -24.62492,-58.93183 -24.52996,-59.15341 -24.1691,-59.58391 -23.92853,-59.79283 -23.71961,-60.13469 -23.45372,-60.28663 -23.25746,-60.5272 -22.97257,-60.75511 -22.80164,-61.26158 -22.97257))",
 "OccurrenceStatus is Present",
 "TaxonKey is Chordata"
 ]
}

 The dataset includes 6090 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057620-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fcnrzr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Casuariiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-30 0,0 0,0 30,-30 30,-30 0))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057621-250920141307145/datasets/export for details.
DOI: 10.6084/m9.figshare.30294787
title: Supplementary Material for: Association between the frailty and cardiovascular disease risk in populations with cardiovascular-kidney-metabolic syndrome stages 0-3: a prospective cohort study

description: Introduction: Previous studies found that frailty was an important risk factor for cardiovascular disease (CVD). However, the relationship between frailty and CVD risk across different cardiovascular-kidney-metabolic (CKM) syndrome stages remains poorly understood. This study investigated the association between frailty and incident CVD in populations with CKM syndrome stages 0-3.
Methods: We analyzed 6,049 middle-aged and older adults without pre-existing CVD data from the China Health and Retirement Longitudinal Study (2011-2020). Participants were categorized into CKM syndrome stages 0-3 based on the American Heart Association's criteria. Frailty was assessed using the Frailty Index (FI) and classified as robust, pre-frail, or frail. Cox proportional hazard models examined the association between frailty and incident CVD.
Results: During a median follow-up of 7.5 years, 1,441 participants developed CVD. Compared to robust individuals, pre-frail and frail participants had multivariable-adjusted hazard ratios of 1.58 and 2.13 for incident CVD, respectively. Each standard deviation increase in FI was associated with a 28% higher risk of incident CVD. A dose-response relationship was observed between FI and CVD risk, with no significant nonlinearity was detected. These associations remained consistent across all CKM syndrome stages, although significant effect modifications were observed by age, gender, and hypertension status. Sensitivity analyses yielded consistent results.
Conclusions: Frailty is independently associated with increased CVD risk across the spectrum of CKM syndrome stages, with a clear dose-response relationship.
DOI: 10.6084/m9.figshare.30294787.v1
title: Supplementary Material for: Association between the frailty and cardiovascular disease risk in populations with cardiovascular-kidney-metabolic syndrome stages 0-3: a prospective cohort study

description: Introduction: Previous studies found that frailty was an important risk factor for cardiovascular disease (CVD). However, the relationship between frailty and CVD risk across different cardiovascular-kidney-metabolic (CKM) syndrome stages remains poorly understood. This study investigated the association between frailty and incident CVD in populations with CKM syndrome stages 0-3.
Methods: We analyzed 6,049 middle-aged and older adults without pre-existing CVD data from the China Health and Retirement Longitudinal Study (2011-2020). Participants were categorized into CKM syndrome stages 0-3 based on the American Heart Association's criteria. Frailty was assessed using the Frailty Index (FI) and classified as robust, pre-frail, or frail. Cox proportional hazard models examined the association between frailty and incident CVD.
Results: During a median follow-up of 7.5 years, 1,441 participants developed CVD. Compared to robust individuals, pre-frail and frail participants had multivariable-adjusted hazard ratios of 1.58 and 2.13 for incident CVD, respectively. Each standard deviation increase in FI was associated with a 28% higher risk of incident CVD. A dose-response relationship was observed between FI and CVD risk, with no significant nonlinearity was detected. These associations remained consistent across all CKM syndrome stages, although significant effect modifications were observed by age, gender, and hypertension status. Sensitivity analyses yielded consistent results.
Conclusions: Frailty is independently associated with increased CVD risk across the spectrum of CKM syndrome stages, with a clear dose-response relationship.
DOI: 10.15468/dl.w9tt8s
title: Occurrence Download

description: A dataset containing 163059 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Galliformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((120 -30,150 -30,150 0,120 0,120 -30))"
 ]
}

 The dataset includes 163059 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057566-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5fwkep
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dorycnium spectabile)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057627-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kra699
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Galliformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-150 -60,-120 -60,-120 -30,-150 -30,-150 -60))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057625-250920141307145/datasets/export for details.
DOI: 10.18150/rs1upm
title: Age-dependent neuroinflammation response to voluntary wheel running and metformin treatment in the frontal cortex of ovariectomized female mice

description: The attached file includes the raw data used for analysis related to the publication.: Grabowska K, Grabowski M, Morys J, Olakowska E, Małecki A, Barski JJ, Nowacka-Chmielewska M. Age-dependent neuroinflammation response to voluntary wheel running and Metformin treatment in the frontal cortex of ovariectomized female mice. Sci Rep. 2025; 15(1):26382. doi: 10.1038/s41598-025-10014-0. PMID: 40691224; PMCID: PMC12280059.This research was funded by National Science Centre, Poland grant no. 2021/41/N/NZ7/01581.
DOI: 10.15468/dl.n55hud
title: Occurrence Download

description: A dataset containing 1609 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ilex integra)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1609 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057628-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30290239
title: Dataset for "Interplay of tectonics and topography facilitated sudden dyke intrusion in 2022 at São Jorge Island, Azores"

description: This dataset contains data, scripts and code used for the article "Interplay of tectonics and topography facilitated sudden dyke intrusion in 2022 at São Jorge Island, Azores".The dataset includes:RINEX v2 data files from GNSS stations AZGR, AZTP, BSRP, HORT, and PIED for the period between January 2017 and June 2022.Seismic data results from processing of waveforms for the period between January 2017 and June 2022 including date, location and magnitudes.COMSOL Multhiphysics software models used for FEM modeling of stress field below São Jorge Island.Scripts used for geodetic inversion using GBIS software.<br><br>
DOI: 10.6084/m9.figshare.30290239.v1
title: Dataset for "Interplay of tectonics and topography facilitated sudden dyke intrusion in 2022 at São Jorge Island, Azores"

description: This dataset contains data, scripts and code used for the article "Interplay of tectonics and topography facilitated sudden dyke intrusion in 2022 at São Jorge Island, Azores".The dataset includes:RINEX v2 data files from GNSS stations AZGR, AZTP, BSRP, HORT, and PIED for the period between January 2017 and June 2022.Seismic data results from processing of waveforms for the period between January 2017 and June 2022 including date, location and magnitudes.COMSOL Multhiphysics software models used for FEM modeling of stress field below São Jorge Island.Scripts used for geodetic inversion using GBIS software.<br><br>
DOI: 10.15468/dl.2bgt47
title: Occurrence Download

description: A dataset containing 76901 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cynodonichthys uroflammeus, Poeciliopsis paucimaculata, Cribroheros diquis, Cynodonichthys glaucus, Rineloricaria uracantha, Cynodonichthys hildebrandi, Amphilophus lyonsi, Cribroheros altifrons, Hypostomus aspidolepis, Poeciliopsis retropinna, Odontostilbe dialeptura, Carlhubbsia stuarti, Xiphophorus signum, Astyanax orstedii, Tlaloc portillorum, Rhamdia nicaraguensis, Cryptoheros spilurus, Alfaro huberi, Poecilia dominicensis, Priapichthys annectens, Eigenmannia meeki, Eretmobrycon bayano, Pseudoxiphophorus cataractae, Astyanax baileyi, Astyanax dorioni, Pseudoxiphophorus obliquus, Phoxinus ujmonensis, Amphilius jacksonii, Haplochromis malacophagus, Girardinus denticulatus, Cobitis taenia, Zingel streber, Zingel zingel, Umbra krameri, Gymnocephalus schraetser, Amphilius kivuensis, Synodontis afrofischeri, Poecilia montana, Pseudophallus mindii, Eretmobrycon scleroparius, Roeboides dayi, Lebiasina festae, Micralestes acutidens, Marcusenius macrolepidotus, Oreochromis macrochir, Serranochromis angusticeps, Tilapia sparrmanii, Enteromius eutaenia, Cyphomyrus discorhynchus, Synodontis nigromaculatus, Sargochromis mellandi, Tylochromis bangwelensis, Enteromius bifrenatus, Amphilius cryptobullatus, Ctenopoma multispine, Clarias stappersii, Pharyngochromis acuticeps, Enteromius haasianus, Enteromius brevidorsalis, Enteromius barotseensis, Odontesthes mauleanum, Creagrutus zephyrus, Capoetobrama kuschakewitschi, Perca schrenkii, Rhynchocypris dementjevi, Gobio lepidolaemus, Schizothorax argentatus, Leuciscus oxyrrhis, Leuciscus lehmanni, Triplophysa elegans, Pseudoscaphirhynchus hermanni, Pseudoscaphirhynchus kaufmanni, Alburnoides holciki, Triplophysa sewerzowi, Triplophysa dorsonotatus, Triplophysa hutjertjuensis, Triplophysa ulacholica, Gobio latus, Phoxinus poljakowii, Brachymystax savinovi, Phoxinus issykkulensis, Schizothorax pseudoaksaiensis, Triplophysa uranoscopus, Triplophysa lacusnigri, Triplophysa chondrostoma, Schizothorax fedtschenkoi, Triplophysa ferganaensis, Triplophysa daryoae, Pseudoscaphirhynchus fedtschenkoi, Cottus jaxartensis, Cottus spinulosus, Triplophysa coniptera, Triplophysa kafirnigani, Aspiolucius esocinus, Triplophysa tenuicauda, Triplophysa stolickai, Triplophysa tenuis)",
 "HasCoordinate is true",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 76901 records from 327 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057575-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ffzrsd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Casuariiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-60 0,-30 0,-30 30,-60 30,-60 0))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057629-250920141307145/datasets/export for details.
DOI: 10.15468/dl.7zfzwh
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Casuariiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-90 0,-60 0,-60 30,-90 30,-90 0))"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057631-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k7feqt
title: Occurrence Download

description: A dataset containing 8174 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Umbra pygmaea",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8174 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057634-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wqadve
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Casuariiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-120 0,-90 0,-90 30,-120 30,-120 0))"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057633-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.grazzv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Osteospermum ecklonis",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057630-250920141307145/datasets/export for details.
DOI: 10.15151/esrf-es-2227857416
title: Reconstruction of neural circuits controlling insect eye movements

description: The eyes of many animals move, constantly changing the spatial relationships of gaze and objects. Many visual tasks thus require an accurate estimate of the current eye position. It is thought that both corollary discharge signals and proprioceptive feedback play a role in conveying eye position signal. However, the mechanisms of proprioception for eye movements is still not fully understood, even in vertebrates. It has been shown recently that the fruit fly, Drosophila melanogaster, moves its retinas beneath the stationary lenses of its compound eye using two muscles [1]. Some of these movements strongly resemble vertebrate eye movements. This provides an excellent opportunity to gain a detailed understanding of proprioceptive feedback from eye movements in a small and genetically accessible organism. Here, we aim to anatomically describe mechanosensory neurons innervating the fly eye muscles and trace their axonal projections to the brain.
DOI: 10.15468/dl.ebase5
title: Occurrence Download

description: A dataset containing 692 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eleotris oxycephala"
 ]
}

 The dataset includes 692 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057632-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17284441
title: Supplement for "Draft Genome Sequence of an Entomopathogenic Fungus Amphichorda felina"

description: Supplement provides method and results of the phylogenetic analysis of the Amphichorda genus. The result indicates that the the isolate CBM-FB-45539 is truely Amphichorda (Beauveria)  felina.
DOI: 10.5281/zenodo.17284442
title: Supplement for "Draft Genome Sequence of an Entomopathogenic Fungus Amphichorda felina"

description: Supplement provides method and results of the phylogenetic analysis of the Amphichorda genus. The result indicates that the the isolate CBM-FB-45539 is truely Amphichorda (Beauveria)  felina.
DOI: 10.34894/7uimfi
title: Inducible CRISPRi/dCas9 platforms in Lactococcus lactis; application in essential gene silencing

description: Plasmid- and genome-based inducible CRISPRi systems were developed for Lactococcus lactis. The nisin-inducible promoter PnisA was used to drive the expression of dCas9 from Streptococcus pyogenes, while the strong constitutive L. lactis promoter Pusp45 was used to express single-guide RNA. In addition, a superfolder fluorescence protein was fused to the C-terminal of dCas9 to visualize the induction level of the fusion protein. Both plasmid systems were successfully used to inhibit the expression of the firefly luciferase reporter gene. The CRISPRi system was tested by silencing the genes encoding the major autolysin AcmA, tubulin FtsZ and penicillin-binding protein Pbp2b, the absence of which resulted in the expected morphological phenotypes. However, the plasmid-based systems were leaky, and mutant phenotypes were already observed without the addition of the inducer nisin. An improved CRISPRi system was obtained by inserting dcas9 gene variants into the L. lactis chromosome to dcrease their copy number. The chromosome-based (cb) CRISPRi system lowered the expression of dCas9-sfGFP appr. 20 times compared to the plasmid-based system and the cells maintained their normal morphology in the absence of nisin. The tight cbCRISPRi system was used to silence the essential L. lactis gene ybeY, which resulted in a dramatic growth defect. Introducing a synonymous mutation of amino acid codon at the sgRNA recognition site on ybeY can recover the phenotype. RNA sequencing of the ybeY-silenced strain indicated that decreasing the expression of ybeY downregulated the expression of proteins that are part of the 30S and 50S subunits. In addition, the expression of large numbers of genes encoding membrane proteins, including ATP synthase subunits, sugar/amino acid permeases, and multiple types of transporters, was downregulated upon the silencing of ybeY. The CRISPRi systems contrusted in this study will be a valuable genetic tool box for future research of L. lactis.
DOI: 10.5281/zenodo.15084542
title: Replication data for: "Color and near-infrared reflectance covary in distinct ways across taxa" by Goldenberg et al.

description: This repository contains the data and code used to produce the manuscrpit "Color and near-infrared reflectance covary in distinct ways across taxa" by Goldenberg et al.

The article is under review

It contains:



1) "Comparative_RScript.Rmd": R-script to reproduce our work

2) "total_dataset.csv": Our full dataset in csv format

3) "total_dataset.csv": Our full dataset in xlsx format

4) "crocodylia_species.nwk": crocodyl phylogeny from TimeTree.org

5) "insect_species_jon.nwk": insect phylogeny from TimeTree.org

6) "mammals.tree": mammal phylogeny from Alvarez et al. 2022

7) "AppendixS3.txt": squamates phylogeny from Zheng and Wiens (2016)

8) "Phasar.nwk": phasmid and spider phylogeny from TImeTree.org

9) "testudines_species.nwk": testudines phylogeny from TimeTree.org