cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/p9gb7z54sp.1
title: CSPlib: A performance portable parallel software toolkit for analyzing complex kinetic mechanisms

description: Computational singular perturbation (CSP) is a method to analyze dynamical systems. It targets the decoupling of fast and slow dynamics using an alternate linear expansion of the right-hand side of the governing equations based on eigenanalysis of the associated Jacobian matrix. This representation facilitates diagnostic analysis, detection and control of stiffness, and the development of simplified models. We have implemented CSP in a C++ open-source library CSPlib using the Kokkos parallel programming model to address portability across diverse heterogeneous computing platforms, i.e., multi/many-core CPUs and GPUs. We describe the CSPlib implementation and present its computational performance across different computing platforms using several test problems. Specifically, we test the CSPlib performance for a constant pressure ignition reactor model on different architectures, including IBM Power 9, Intel Xeon Skylake, and NVIDIA V100 GPU. The size of the chemical kinetic mechanism is varied in these tests. As expected, the Jacobian matrix evaluation, the eigensolution of the Jacobian matrix, and matrix inversion are the most expensive computational tasks. When considering the higher throughput characteristic of GPUs, GPUs performs better for small matrices with higher occupancy rate. CPUs gain more advantages from the higher performance of well-tuned and optimized linear algebra libraries such as OpenBLAS.
DOI: 10.17632/2rp2rxd8yg.1
title: Measurements of equine foot parameters using radiographs and low-field magnetic resonance images are generally not comparable

description: This dataset contains the original measurements and ratios performed as described in the above paper. A summary of the Friedman tests comparing radiographic and MR measurements is also included.
DOI: 10.17632/c5k7jz8ygt.1
title: K29-linked unanchored polyubiquitin chains affect ribosome biogenesis and direct ribosomal proteins to the Intranuclear Quality control compartment (INQ)

description: Ribosome assembly requires precise coordination between the production and assembly of ribosomal components. Mutations in ribosomal proteins that inhibit the assembly process or ribosome function are often associated with Ribosomopathies, some of which are linked to defects in proteostasis. In this study, we examine the interplay between several yeast proteostasis enzymes, including deubiquitylases (DUBs), Ubp2 and Ubp14, and E3 ligases, Ufd4 and Hul5, and we explore their roles in the regulation of the cellular levels of K29-linked unanchored polyubiquitin (polyUb) chains. Accumulating K29-linked unanchored polyUb chains associate with maturing ribosomes to disrupt their assembly, activate the Ribosome assembly stress response (RASTR), and lead to the sequestration of ribosomal proteins at the Intranuclear Quality control compartment (INQ). These findings reveal the physiological relevance of INQ and provide insights into mechanisms of cellular toxicity associated with Ribosomopathies.
DOI: 10.5281/zenodo.10521866
title: The genotypic data of SNP and silicoDart markers for 509 winter wheat accessions.

description: The genotypic data of 13499 SNP and 26369 silicoDart markers for 509 winter wheat accessions representing registered varieties and advanced breeding materials are given in ISA Tab format. The data has been created as a part of HYBRE project supported by the National Centre for Research and Development in the BIOSTRATEG program: BIOSTRATEG3/343665/6/NCBR/2017.

The main objective of the project was to create bases for wheat hybrid breeding in Poland using an integrated approach including precise phenotyping, genotyping and improving breeding materials, creating tools for molecular selection and recognizing interest of Polish breeders, farmers and other groups of stakeholders in respect to wheat hybrid varieties.

A general description of the genetic structure of 509 wheat accessions representing registered varieties and advanced breeding materials via the high-density genotyping-by-sequencing approach can be found in: Tyrka M., Mokrzycka M., Bakera B., Tyrka D., Szeliga M., Stojałowski S., Matysik P., Rokicki M., Rakoczy-Trojanowska M., Krajewski P. Evaluation of genetic structure in European wheat cultivars and advanced breeding lines using high-density genotyping-by-sequencing approach. BMC Genomics 22, 81 (2021). https://doi.org/10.1186/s12864-020-07351-x

The results of genome-wide association studies based on SNP markers for six agronomic traits assessed in eight environments for 509 winter wheat accessions can be found in: Mokrzycka M., Stojałowski S., Tyrka M., Matysik P., Żmijewska B., Marcinkowski R., Woźna-Pawlak U., Martofel R., Rokicki M., Rakoczy-Trojanowska M., Krajewski P. Genome-Wide Association Analysis for Hybrid Breeding in Wheat. International Journal of Molecular Sciences. 2022; 23(23):15321. https://doi.org/10.3390/ijms232315321
DOI: 10.5281/zenodo.10521867
title: The genotypic data of SNP and silicoDart markers for 509 winter wheat accessions.

description: The genotypic data of 13499 SNP and 26369 silicoDart markers for 509 winter wheat accessions representing registered varieties and advanced breeding materials are given in ISA Tab format. The data has been created as a part of HYBRE project supported by the National Centre for Research and Development in the BIOSTRATEG program: BIOSTRATEG3/343665/6/NCBR/2017.

The main objective of the project was to create bases for wheat hybrid breeding in Poland using an integrated approach including precise phenotyping, genotyping and improving breeding materials, creating tools for molecular selection and recognizing interest of Polish breeders, farmers and other groups of stakeholders in respect to wheat hybrid varieties.

A general description of the genetic structure of 509 wheat accessions representing registered varieties and advanced breeding materials via the high-density genotyping-by-sequencing approach can be found in: Tyrka M., Mokrzycka M., Bakera B., Tyrka D., Szeliga M., Stojałowski S., Matysik P., Rokicki M., Rakoczy-Trojanowska M., Krajewski P. Evaluation of genetic structure in European wheat cultivars and advanced breeding lines using high-density genotyping-by-sequencing approach. BMC Genomics 22, 81 (2021). https://doi.org/10.1186/s12864-020-07351-x

The results of genome-wide association studies based on SNP markers for six agronomic traits assessed in eight environments for 509 winter wheat accessions can be found in: Mokrzycka M., Stojałowski S., Tyrka M., Matysik P., Żmijewska B., Marcinkowski R., Woźna-Pawlak U., Martofel R., Rokicki M., Rakoczy-Trojanowska M., Krajewski P. Genome-Wide Association Analysis for Hybrid Breeding in Wheat. International Journal of Molecular Sciences. 2022; 23(23):15321. https://doi.org/10.3390/ijms232315321
DOI: 10.6084/m9.figshare.25039193
title: Untitled Item<b>Simulation and optimization of the hybrid PV/Li-ion battery system</b>

description: A circuit model for the coupling system with PV cells and a charge controller for a Li-ion battery is presented in the MATLAB/Simulink environment.
DOI: 10.17632/89g8yn75ch.1
title: Can community service grants foster social and economic integration for youth? A randomized trial in Kazakhstan

description: These are the replication files for the following paper:
Bhanot, S.P., Crost, B., Leight, J., Mvukiyehe, E. and Yedgenov, B., 2021. Can community service grants foster social and economic integration for youth? A randomized trial in Kazakhstan. Journal of Development Economics, 153, p.102718.
DOI: 10.17632/dzwgsrrvzc.1
title: Simulation of Isolation over time

description: Purpose:

The dataset simulates the progression of isolation over time, incorporating various aspects of isolation and potential intervention strategies.
Components:

Time: The dataset covers a simulated time period of 10 units, divided into 1000 equally spaced time points.
Isolation Components:
Withdrawal: Represented by a sine wave function, suggesting fluctuations in withdrawal tendencies.
Rejection: Represented by a negative cosine wave function, indicating potential oscillations in feelings of rejection.
Depression: Modelled by an exponentially decaying function, implying a gradual decrease in depression over time.
Anxiety: Represented by a sine wave function with double the frequency, suggesting more rapid changes in anxiety levels.
Interventions:
Early Intervention: Aims to reduce the impact of withdrawal by halving its values when they exceed a threshold of 0.5.
Coping Mechanisms: Represented by a placeholder function (to be replaced with a more accurate model), suggesting potential mitigation of depression symptoms.
Model:

The isolation_model function combines the values of each isolation component at a given time point to produce an overall isolation level.
It also integrates the effects of interventions, modifying withdrawal and depression values based on their respective strategies.
Visualisation:

The code generates a plot of isolation levels over time, allowing for visual analysis of the simulated progression and the impact of interventions.
Key Points:

The dataset is simulated, not based on real-world measurements.
The functions for isolation components and interventions are simplified representations.
The primary focus is on exploring the interplay of isolation factors and potential intervention effects.
Next Steps:

Refine Intervention Models: Replace placeholder functions with more realistic representations of intervention strategies.
Validate with Real-World Data: Compare simulated results with empirical data to assess model accuracy.
Explore Additional Factors: Incorporate other relevant factors that contribute to isolation, such as social support or personality traits.
Extend Timeframe: Simulate isolation over longer time periods to observe long-term trends and intervention outcomes.
DOI: 10.17632/5tt7kw7vh7.1
title: Healthcare-seeking behavior and health expenditures in Iraq

description: Assessment of health seeking behavior and healthcare expenditure in a population sample in Erbil, Iraq.
DOI: 10.17632/d3nc72r46h.1
title: original blot for western blot

description: original blot for western blot
DOI: 10.17632/dnryw89c68.1
title: RNA-seq data from paper "Coagulation factor FVII fine-tunes hepatic steatosis by blocking AKT-CD36-mediated fatty acid uptake"

description: RNA-seq data from paper "Coagulation factor FVII fine-tunes hepatic steatosis by blocking AKT-CD36-mediated fatty acid uptake"
DOI: 10.17632/54whtdj426.1
title: Data for: Corporate Governance, Home Country Governance, and MNE CSR: Evidence from Ghana

description: This dataset is related to a sample of 360 firm-year observations pertaining to 44 subsidiaries of foreign MNEs operating in Ghana from 2010 to 2018. It includes data on corporate social responsibility (CSR) expenditure, corporate governance, and financial information of the sample firms, retrieved from their annual reports. Additionally, the dataset contains data on the home country of these MNEs from various sources, including 1) national governance of the home country, gathered from the World Bank Worldwide Governance Indicators (WGI) dataset, 2) national competitiveness, quality of infrastructure, and quality of financial system in the home country, obtained from Global Competitiveness Report, and 3) gross domestic product (GDP) per capita and GDP per capita growth of the home country, obtained from the World Bank. The industry classification for the subsidiary is obtained from the Refinitiv business classification (TRBC) available in Eikon. 
The dataset is composed of the following files: 
(1) reg_data.dta: provides all input data for all variables used in the analyses.
(2) reg_code.do: contains STATA codes for all the analyses.
(3) files contained in a folder named “output”: includes all the output from the statistical analyses using STATA.
(4) replicable_guide.docx: outlined the methodology used in gathering and analyzing the data.
DOI: 10.17632/75rp3hn284.1
title: Relatórios de Auditorias Operacionais da Educação Básica realizadas pelos Tribunais de Contas Regionais do Brasil

description: A base de dados demonstra os relatórios de auditorias operacionais da educação básica realizadas pelos Tribunais de Contas Regionais do Brasil. A coleta dos dados contempla relatórios realizados no período de 2018 a agosto de 2023. As variantes constantes na base de dados são: Tribunal de Contas; ano de elaboração do relatório; exercício auditado; título do relatório; objetivo da auditoria; metodologia; limitações; conclusão; proposta de encaminhamento; mescla contendo conclusão e proposta de encaminhamento.
DOI: 10.17632/75rp3hn284.2
title: Relatórios de Auditorias Operacionais da Educação Básica realizadas pelos Tribunais de Contas Regionais do Brasil

description: A base de dados demonstra os relatórios de auditorias operacionais da educação básica realizadas pelos Tribunais de Contas Regionais do Brasil. A coleta dos dados contempla relatórios realizados no período de 2018 a agosto de 2023. As variantes constantes na base de dados são: Tribunal de Contas; ano de elaboração do relatório; exercício auditado; título do relatório; objetivo da auditoria; metodologia; limitações; conclusão; proposta de encaminhamento; mescla contendo conclusão e proposta de encaminhamento.
DOI: 10.17632/yyff8sz32t.1
title: Utilization of biochar for remediation of heavy metals in aqueous environments: A review and bibliometric analysis - Supplementary material

description: The supplementary material for the article “Utilization of Biochar for Remediation of Heavy Metals in Aqueous Environments: A Review and Bibliometric Analysis” contains a concise R code. The code enables merging data from the Web of Science core collection and Scopus. The supplementary material also presents a detailed distribution of the time duration, in days, from submission to acceptance for both open-access and subscription-based articles. The chosen statistical test supports this analysis, the Mann-Whitney U test, and additional plots to improve the clarity and depth of our analysis.
DOI: 10.17632/296n58m94f.1
title: The Supplementary Dara for "Terazosin attenuates abdominal aortic aneurysm formation by downregulating Peg3 expression to inhibit vascular smooth muscle cell apoptosis and senescence"

description: This dataset constitutes supplementary data for the study on "Terazosin attenuates abdominal aortic aneurysm formation by downregulating Peg3 expression to inhibit vascular smooth muscle cell apoptosis and senescence." It primarily includes: 1. Weight records of APOE and C57BL/6J mice for all experiments. 2. Gene expression levels resulting from RNA-seq sequencing of MOVAS cells after 48 hours of 10nM Terazosin treatment.
DOI: 10.17632/5mrybybcm2.1
title: Dermoscopy and reflectance confocal microscopy for basal cell carcinoma diagnosis and diagnosis prediction score: a prospective and multicentric study on 1005 lesions

description: supplementary materials for paper titled "Dermoscopy and reflectance confocal microscopy for basal cell carcinoma diagnosis and diagnosis prediction score: a prospective and multicentric study on 1005 lesions" , JAAD
DOI: 10.17632/4xz9wjknwy.1
title: 800 AIGC docs

description: Corpus Collection Process: The corpus collection involved diverse task scenarios and varying degrees of task openness. Bilingual inputs were provided, encompassing different task scenes and levels of openness, processed by eight mainstream generative artificial intelligence tools from both China and the United States. Ultimately, a total of 800 independent documents were generated, forming the research sample corpus for this study. The corpus is characterized by bilingual content in both Chinese and English, encompassing multiple tasks, employing various models, and exhibiting a dual level of openness.
DOI: 10.17632/whksj6f7bd.1
title: Thermo-mechanical responses of the Human molar tooth

description: The thermo-mechanical responses of the human molar tooth have been analysed. A finite element method-based packaged software has been used. The data related to the result of the manuscript are attached here.
DOI: 10.17632/zh5zjr44zk.1
title: GRF Data for Ankle-related Fractures

description: This dataset is submitted in support of publication submission. This includes the analysed data from a portion of GaitRec Data published previoulsy. In this data three dimensional ground reaction forces (GRF) are reported for three fractured and one normal condition. This data is filtered and normalised. The GRF(s) are reported for both fractured and intact sides as two separate excel files. In the metadata file, all subjects information is presented. Peak magnitudes of normalised GRF(s) and data for interlimb correlations is presented as two further Excel files.
DOI: 10.17632/d2xg8jw4kc.1
title: Codes for the paper entitled “High immigration rates critical for establishing emigration-driven diversity in microbial communities”

description: Codes for the paper entitled "High immigration rates critical for establishing emigration-driven diversity in microbial communities"
DOI: 10.17632/v2cb552j8m.1
title: End-to-end dataset

description: This dataset is designed for mobile robot navigation and was built to test a navigation prototype using only a single camera. The dataset contains 4 classes: forward, left, right, and stop
DOI: 10.17632/k86hp589sz.1
title: Raw and processed data for "Short-range order and chemical compositions of glasses along the basaltic-rhyolite sub-alkaline join by Raman and FTIR spectroscopies"

description: In this repository the raw and processed data for six sub-alkaline glasses with compositions progressively shifting from the tholeiitic basalt (B100) end-member to the rhyolite (R100) end-member are reported. These samples were investigated and analysed in the same frequency domain by both Raman and FTIR. The results of this investigation are reported in the paper "Short-range order and chemical compositions of glasses along the basaltic-rhyolite sub-alkaline join by Raman and FTIR spectroscopies".
DOI: 10.17632/8td4f55j2g.1
title: Contextual patch-NetVLAD: Context aware patch feature descriptor and patch matching mechanism for visual place recognition

description: This is the UTown7 dataset used in our paper, entitled "contextual patch-NetVLAD: Context aware patch feature descriptor and patch matching mechanism for visual place recognition".

It consists of images that are gathered from the Stephen Riady Centre, located on the campus of the National University of Singapore. They are gathered at seven unique locations across three different levels of the centre, including flavour back door, flavour front door, gym, swimming pool entrance, bank, restroom, and convenience store. It also contains the code to apply image augmentation methods to generate more images for the experimental performance evaluation.
DOI: 10.17632/53gnkzmp27.1
title: ПРИМЕНЕНИЕ МОРФОМЕТРИЧЕСКИХ ХАРАКТЕРИСТИК ИМАГО В КАЧЕСТВЕ ДИАГНОСТИЧЕСКИХ ПРИЗНАКОВ ДЛЯ ДИФФЕРЕНЦИАЦИИ РОДОВ СЕМЕЙСТВ PTINIDAE

description: Семейства жуков-притворяшек (Ptinidae) в Палеарктическом биогеографическом регионе насчитывает около 800 видов (Löbl I., Smetana A., 2007). Для практических целей карантина и защиты растений в части идентификации имеют значение виды, повреждающие растительную сельскохозяйственную продукцию, а также способные распространяться с экспортируемой подкарантинной продукцией и имеющие фитосанитарное значение в странах-импортерах. При этом, существующие определительные ключи (Мордкович Я.Б., Соколов Е.А., 1999; Егоров А.Б., 1995) в основном охватывают широкое число родов и видов в рамках одного семейства, распространенных на той или иной территории. В этой связи, является актуальным разработка оптимизированного идентификационного ключа, включающего виды, которые могут быть выявлены в экспортируемом зерне и продуктах его переработки.
DOI: 10.17632/xzdh6sz7jn.1
title: ПРИМЕНЕНИЕ МОРФОМЕТРИЧЕСКИХ ХАРАКТЕРИСТИК ИМАГО В КАЧЕСТВЕ ДИАГНОСТИЧЕСКИХ ПРИЗНАКОВ ДЛЯ ДИФФЕРЕНЦИАЦИИ РОДОВ СЕМЕЙСТВ BOSTRICHIDAE

description: Семейства жуков-капюшонников (Bostrichidae) в Палеарктическом биогеографическом регионе насчитывает около 700 видов (Löbl I., Smetana A., 2007). Для практических целей карантина и защиты растений в части идентификации имеют значение виды, повреждающие растительную сельскохозяйственную продукцию, а также способные распространяться с экспортируемой подкарантинной продукцией и имеющие фитосанитарное значение в странах-импортерах. При этом, существующие определительные ключи (Мордкович Я.Б., Соколов Е.А., 1999; Егоров А.Б., 1995) в основном охватывают широкое число родов и видов в рамках одного семейства, распространенных на той или иной территории. В этой связи, является актуальным разработка оптимизированного идентификационного ключа, включающего виды, которые могут быть выявлены в экспортируемом зерне и продуктах его переработки.
DOI: 10.17632/r5rs8m34z4.1
title: A systematic review and meta-analysis

description: In-depth literature search spanning from 1975 to 2023 to cover different production diseases in dairy cattle. Physiological systems evaluated: reproductive, mammary, metabolic, integumentary, immune, musculoskeletal, digestive, and respiratory. Original research in the English language. The searches specifically targeted documents published in peer-reviewed journals and written in English. The search process yielded a total of 3,349 records. These records underwent a two-stage filtering process, initially screening the titles and abstracts. From this initial screening, 505 articles were deemed relevant and were then imported into SAS 9.4, where additional analysis was conducted using SAS integrated with Python and the NLTK (Natural Language Toolkit) library for basic full-text analysis. The rigorous search and filtering process ensured that a comprehensive and representative set of articles was included in the study, providing a robust foundation for the meta-analysis and systematic review of the identified traits related to production diseases in dairy cows. The studies included in the data extraction process met specific criteria for inclusion.
DOI: 10.17632/r5rs8m34z4.2
title: A systematic review and meta-analysis

description: In-depth literature search spanning from 1975 to 2023 to cover different production diseases in dairy cattle. Physiological systems evaluated: reproductive, mammary,
metabolic, integumentary, immune, musculoskeletal, digestive, and respiratory. Original research in the English language. 
The searches specifically targeted documents published in peer-reviewed journals and written in English. The search process yielded a total of 3,349 records. These records underwent a two-stage filtering process, initially screening the titles and abstracts. From this initial screening, 505 articles were deemed relevant and were then imported into SAS 9.4, where additional analysis was conducted using SAS integrated with Python and the NLTK (Natural Language Toolkit) library for basic full-text analysis. 
The rigorous search and filtering process ensured that a comprehensive and representative set of articles was included in the study, providing a robust foundation for the meta-analysis and systematic review of the identified traits related to production diseases in dairy cows. The studies included in the data extraction process met specific criteria for inclusion.
DOI: 10.17632/n7nfwptybf.2
title: Drivers of PM2.5 episodes and exceedance in India: A synthesis from the COALESCE network

description: Details about the dataset is provided in the manuscript "Drivers of PM-2.5 episodes and exceedance in India: A synthesis from the COALESCE network" published in JGR: Atmospheres