cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3773228
title: Cantemist corpus: gold standard of oncology clinical cases annotated with CIE-O 3 terminology

description: <strong>Intro:</strong> Cantemist shared task dataset (divided in train, dev1, dev2 and test). In addition, we include here the Cantemist background set. It contains the train, development and test sets of the three subtasks: cantemist-ner, cantemist-norm and cantemist-coding with Gold Standard annotations. In addition, it contains the documents of the background set, without annotations. <strong>Please cite if you use this dataset:</strong> Miranda-Escalada, A., Farré, E., & Krallinger, M. (2020). Named entity recognition, concept normalization and clinical coding: Overview of the cantemist track for cancer text mining in spanish, corpus, guidelines, methods and results. In <em>Proceedings of the Iberian Languages Evaluation Forum (IberLEF 2020), CEUR Workshop Proceedings</em>. <pre><code>@inproceedings{miranda2020named, title={Named entity recognition, concept normalization and clinical coding: Overview of the cantemist track for cancer text mining in spanish, corpus, guidelines, methods and results}, author={Miranda-Escalada, A and Farr{\'e}, E and Krallinger, M}, booktitle={Proceedings of the Iberian Languages Evaluation Forum (IberLEF 2020), CEUR Workshop Proceedings}, year={2020} }</code></pre> <strong>Format:</strong> For subtasks cantemist-norm and cantemist-ner, annotations are distributed in Brat format. See Brat webpage for more information For subtask cantemist-coding, codes are grouped in a TSV file with the following columns (this follows the format used in CodiEsp shared task): filename code <strong>Shared task goal:</strong> In the three subtasks, the goal will be to predict the annotations (either the ANN files or the TSV with the codes) given only the plain text files. <strong>Resources:</strong> <strong>Web</strong> <strong>Citation: </strong>Miranda-Escalada, A., Farré, E., & Krallinger, M. (2020). Named entity recognition, concept normalization and clinical coding: Overview of the cantemist track for cancer text mining in spanish, corpus, guidelines, methods and results. In <em>Proceedings of the Iberian Languages Evaluation Forum (IberLEF 2020), CEUR Workshop Proceedings</em>. <strong>Silver Standard corpus</strong> <strong>Annotation guidelines</strong> <strong>YouTube presentations</strong> <strong>Participant codes</strong> For further information, please visit https://temu.bsc.es/cantemist/ or email us at encargo-pln-life@bsc.es
description: Funded by the Plan de Impulso de las Tecnologías del Lenguaje (Plan TL).
DOI: 10.6073/pasta/6b7fea979e99182600bfb1785376ba74
title: Litterfall, Biomass and Productivity in CRUI Land Use Project at Harvard Forest 1996-1997

description: Prior agricultural land use often plays an important role in the present condition of forests. This research was conducted to find any productivity differences among previously plowed, pastured, and woodlot sites. There are six sites, two from each of the land use types. With this research we wanted to estimate the productivity for each of the six stands and test the hypothesis that rates of annual aboveground biomass and annual litter fall in recovering forests would decline in the order woodlot - pastured - plowed. Twenty-five trees, of various diameters and species, were cored at each site. The cores were analyzed and the radial growth was calculated for the most recent 5 and 10 year intervals. Biomass increments were also calculated for the same time span using published allometric equations. Aboveground woody productivity was calculated for diameter classes within species and semi-log relationships of productivity per diameter were used to calculate the productivity of all trees in the stand that were not cored. Site-specific and species-specific equations were used. Litter fall was estimated by collecting litter from ten traps each in the six stands. Litter was sorted by species and reported on a dry matter basis. Red oaks and red maples were the major contributors of biomass and litter fall in all six of the stands, accounting for about seventy percent of the total aboveground biomass. Although woodlots had higher total biomass there was not a significant difference in productivity across the six sites. The range of productivity including both litter fall and aboveground woody production was from 7524-9014 Kg/ha. This fell into the range for temperate forests according to results published by the International Biological Program. Production per unit biomass was greater in the plowed stand and least in the woodlots.
DOI: 10.26208/q6fb-f432
title: Supplementary data, code, and information for ‘Long-term variability in the El Niño/Southern Oscillation and associated teleconnections’ 

description: We analyze global patterns of reconstructed surface temperature for insights into the behavior of the El Niño/Southern Oscillation (ENSO) and related climatic variability during the past three centuries. The global temperature reconstructions are based on calibrations of a large set of globally distributed proxy records, or “multiproxy” data, against the dominant patterns of surface temperature during the past century. These calibrations allow us to estimate large-scale surface temperature patterns back in time. The reconstructed eastern equatorial Pacific “Niño-3” areal-mean sea surface temperature (SST) index is used as a direct diagnostic of El Niño itself, while the global ENSO phenomenon is analyzed based on the full global temperature fields. We document low-frequency changes in the base state, amplitude of interannual variability, and extremes in El Niño, as well as in the global pattern of ENSO variability. Recent anomalous behavior in both El Niño and the global ENSO is interpreted in the context of the long-term reconstructed history and possible forcing mechanisms. The mean state of ENSO, its global patterns of influence, amplitude of interannual variability, and frequency of extreme events show considerable multidecadal and century-scale variability over the past several centuries. Many of these changes appear to be related to changes in global climate, and the histories of external forcing agents, including recent anthropogenic forcing.
DOI: 10.6084/m9.figshare.14816349.v1
title: DataFigshare_ShieldedenvironmentsreducestressinalienAsteraceae.csv

description: Dataset of the manuscript: <b>Shielded environments reduce stress in alien Asteraceae species during hot and dry summers along urban-to-rural gradients </b>
DOI: 10.6084/m9.figshare.14816349
title: DataFigshare_ShieldedenvironmentsreducestressinalienAsteraceae.csv

description: Dataset of the manuscript: <b>Shielded environments reduce stress in alien Asteraceae species during hot and dry summers along urban-to-rural gradients </b>
DOI: 10.6073/pasta/3cb647633e53670d409161d35a6f81cf
title: Tree Canopy Leaf Area Index in CRUI Land Use Project at Harvard Forest 1997

description: Numerous variables related to land use disturbance and recovery processes can influence forest composition and structure. We’ve measured differences in forest communities in six sites that were formerly plowed, pastured, or continuously forested woodlots in Prospect Hill. None of the sites had noticeable canopy gap disturbance at the time of the measurements. Leaf area index (LAI) was measured with an LAI-2000 plant canopy analyzer (Li-Cor, Inc., Lincoln, NE) at all 77 edge and interior intersection points in the 30 m x 50 m permanent plot (7 columns x 11 rows) in 5 of our 6 land use sites. Under-canopy measurements were made in each site over 25-30 minutes during midday hours (11:00-2:30 EST) on overcast days near solstice (June 13, 18). The under-canopy readings were contrasted with an open-sky measurement taken in an open field near the Harvard Forest headquarters just before beginning data collection in each site. LAI averaged 3.98 and ranged from 2.28 to 5.93 across all sites. W1 had the highest site-level mean (4.62) and maximum (5.93) LAI while S2 had the lowest values (mean = 3.41, max = 4.55). The woodlot also showed the greatest spatial variation as measured by C.V., while plow #1 showed the least variation.
DOI: 10.3886/e112670v1-89780
title: Replication data for: The China Syndrome: Local Labor Market Effects of Import Competition in the United States

description: We analyze the effect of rising Chinese import competition between 1990 and 2007 on US local labor markets, exploiting cross- market variation in import exposure stemming from initial differences in industry specialization and instrumenting for US imports using changes in Chinese imports by other high-income countries. Rising imports cause higher unemployment, lower labor force participation, and reduced wages in local labor markets that house import-competing manufacturing industries. In our main specification, import competition explains one-quarter of the contemporaneous aggregate decline in US manufacturing employment. Transfer benefits payments for unemployment, disability, retirement, and healthcare also rise sharply in more trade-exposed labor markets.
DOI: 10.21223/cop4xp/5ghddg
title: 01_Spectra_data_H_4_16_2020.xlsx
DOI: 10.21223/cop4xp/ukisgd
title: 04_Description_data_H_4_16_2020.tab
DOI: 10.21223/cop4xp/ujs3r9
title: 05_Data_dictionary_H_4_16_2020.tab
DOI: 10.21223/cop4xp/qoolvu
title: 03_Calibration_data_H_4_16_2020.tab
DOI: 10.21223/cop4xp/dgugni
title: 02_Laboratory_data_H_4_16_2020.tab
DOI: 10.21223/cop4xp
title: Dataset for: RTBfoods H.4.16- NIRS Calibration for Texture Cooking Time on cooked sweetpotato

description: Spectra of 61 SP genotypes. 3 cooked cubes per genotype were mashed and scanned by NIRS. Scans were used for calibration development. Reference analysis, cooking time, and texture parameters, was done in Uganda directly before scanning. For texture parameters, the method was changed after sample 17, which means that sample IDs 02 to 17 were not considered for calibration development. Procedures for sampling and sample preparation NIRS measurement on raw FRESH GROUND sweetpotato.SP root samples harvested in 2 locations in Uganda on 11/2019 (61 genotypes). NIR instrument used was Foss XDS, serial number 30101714, and analysis 61 spectra.
DOI: 10.6084/m9.figshare.14754374.v1
title: PAIRS_dataset

description: Test dataset for PAIR-R24M dataset.
DOI: 10.6073/pasta/70de0784f71242128ff55bd2e590e48c
title: Canopy Sky Factors in CRUI Land Use Project at Harvard Forest 1998

description: Hemispherical photos were taken at 35 interior grid corners in each land use site’s 30 m x 50 m permanent plot on uniformly overcast days during summer 1998. A Canon A-1 35 mm camera with a 7.5 mm lens was mounted on a tripod, positioned so the film plane was 0.5 m above ground, oriented N-S with a compass, and leveled. Ektachrome 100 slide film was used. Two exposures were made for each location. The slides were processed and digitized in jpeg format by Kodak, Inc. at a resolution of 1536 x 1024 dpi. The jpeg images were screened for nearground obstructions. Fifteen of the 35 photo locations per site were used in subsequent analysis. Hemiview software (v. 2.0, Delta-T Devices Ltd., Cambridge, UK) was used to process the images and calculate indirect, direct, and global (= indirect + direct) sky factors for each sample location, plus the proportion of global sky factor represented by direct beam radiation. Several images spanning a wide range of canopy density were used to develop protocols for setting optimal thresholds in converting from color to black and white images. Each B/W image was then analyzed at three threshold levels, the optimum level plus 5 threshold units (~ 2.5%) above and below the optimum. The results were averaged across the three threshold levels to provide one set of sky factor data per sample location. Above-canopy incident radiation was calculated daily for the June-September growing season based on (1) latitude and longitude, (2) average atmospheric transmission, and (3) monthly averages for fractions of the day in diffuse radiation due to cloud cover for the Harvard Forest area. Data for 2 and 3 above were provided by researchers at the State University of New York at Albany. Below-canopy radiation was estimated daily across half-hour intervals as the sum of diffuse and direct beam components. Sky factors were then calculated from the above- and below-canopy radiation values and averaged both monthly and across the growing season.
DOI: 10.5517/ccdc.csd.cc25shq6
title: CCDC 2019548: Experimental Crystal Structure Determination

description: Related Article: Kejian Chang, Iker del Rosal, Xizhou Zheng, Laurent Maron, Xin Xu|2021|Dalton Trans.|50|7804|doi:10.1039/D1DT01074C
DOI: 10.5281/zenodo.4768458
title: Position-controlled quantum emitters with reproducible emission wavelength in hexagonal boron nitride

description: Dataset corresponding to all figures of the main text. Nature Communications <strong>12</strong>, 3779 (2021) – DOI : 10.1038/s41467-021-24019-6 Preprint at https://arxiv.org/abs/2011.12224
DOI: 10.5281/zenodo.4768457
title: Position-controlled quantum emitters with reproducible emission wavelength in hexagonal boron nitride

description: Dataset corresponding to all figures of the main text. Nature Communications <strong>12</strong>, 3779 (2021) – DOI : 10.1038/s41467-021-24019-6 Preprint at https://arxiv.org/abs/2011.12224
DOI: 10.6073/pasta/620bf5d2392f0df639460e92e3b814e5
title: Herbaceous Species in CRUI Land Use Project at Harvard Forest 1996

description: Forests recovering from agricultural legacies differ in many ways that influence the landscape distribution, local abundance, and dispersion of herbaceous populations, as well as patterns of species associations within the herbaceous stratum. We recorded the presence/absence of 10 herbaceous species on a 1 x 1 m resolution in a 30 x 50 m permanent plot grid in six land use legacy sites (2 plowed, 2 pastured, 2 permanent woodlot) in summer 1996 to test predictions about herbaceous species abundance, richness, dispersion patterns, patterns of association, and their relationships to forest structure, microclimates, and soil resources. The 10 species chosen differed in several ways (evergreen vs. deciduous, stature, clonal architecture, affinity for disturbed vs. undisturbed forests) that allowed us to probe the impacts of prior disturbance and current resource patterns (light, water, nutrients) on the spatial patterns of individual species and species associations.
DOI: 10.3886/e132122
title: Should CBA use descriptive or prescriptive discount rates? It should use both!

description: This is an agent based financial market model created in Excel that provides experimental data and calculation capabilities for the paper entitled "Should CBA use descriptive or prescriptive discount rates? It should use both!," the abstract of which is as follows:Discounting project net flows that exclude financing costs with prescriptive rates fails to reflect costs of capital; discounting them with descriptive rates fails to reflect intertemporal preferences. A hybrid discounting method is proposed whereby descriptive rates are used to forecast costs of capital and prescriptive rates are used to discount all-inclusive net welfare flows. An agent-based capital market model audits the performance of alternative discounting approaches. There is no need to reconcile the discounting approaches. They should be viewed as complementary, not as competing. They are both necessary, and only jointly sufficient to achieve optimality in intertemporal resource allocation.<br><br><br><br>
DOI: 10.3886/e132122v2
title: Should CBA use descriptive or prescriptive discount rates? It should use both!

description: This is an agent based financial market model created in Excel that provides experimental data and calculation capabilities for the paper entitled "Should CBA use descriptive or prescriptive discount rates? It should use both!," the abstract of which is as follows:Discounting project net flows that exclude financing costs with prescriptive rates fails to reflect costs of capital; discounting them with descriptive rates fails to reflect intertemporal preferences. A hybrid discounting method is proposed whereby descriptive rates are used to forecast costs of capital and prescriptive rates are used to discount all-inclusive net welfare flows. An agent-based capital market model audits the performance of alternative discounting approaches. There is no need to reconcile the discounting approaches. They should be viewed as complementary, not as competing. They are both necessary, and only jointly sufficient to achieve optimality in intertemporal resource allocation.<br><br><br><br>
DOI: 10.6073/pasta/16f440bd344d18b264dfae0011d73af1
title: Mapped Trees in CRUI Land Use Project at Harvard Forest 1996-2006

description: Numerous variables related to land use disturbance and recovery processes influence forest composition, structure, and growth. We measured forest communities in six sites that were formerly plowed, pastured, or continuously forested woodlots in Prospect Hill to test predictions about species composition, stand structure, and productivity in response to agricultural land use legacies. A permanent 30 x 50 m plot gridded in 5 x 5 m sub-plots was established in each of the 6 sites. All trees at least 2.5 cm DBH (diameter at breast height, 1.3 m) were mapped visually in the field, marked with an aluminum tag, and their DBH recorded in summer 1996. Individual boles of multi-stemmed trees were measured separately and a composite single DBH was calculated. Standing dead trees were also mapped and their DBH recorded as well. The 1996 data were used to determine above ground woody biomass using allometric equations for individual trees. The permanent plots were re-surveyed ten years later in fall 2006. The status of each tree mapped in 1996 was recorded (alive, dead standing, dead fallen, forked) and DBH’s were re-measured. Additional trees that grew across the 2.5 cm DBH threshold during the ten-year period were mapped and their DBH’s measured. Composite diameters and above ground woody biomass were determined for forked trees as in 1996. The 2006 re-measurements were used to analyze changes in species composition, stand structure (density, diameter distribution), and mortality patterns among species and size classes, and to calculate net changes in above ground woody biomass across the ten-year period.
DOI: 10.6073/pasta/daaa84bb887c3db8a9e377dc75d86926
title: Microclimate in CRUI Land Use Project at Harvard Forest 1997

description: Understory microenvironmental patterns are strongly influenced by both the forest community and substrate, which are in turn affected by site factors, disturbance history and recovery processes. We measured ground-level microclimates across the growing season as part of a multi-faceted study of soil-plant-atmosphere interactions in sites with different agricultural land-use legacies (formerly plowed, formerly pastured, permanent woodlots) in Prospect Hill. A permanent 30 x 50 m plot was established in each of six sites (2 per land use category) and gridded into 5 x 5 m sub-plots. Fifteen microclimate stations were used to measure photosynthetic photon flux (PPF, umol m-2 s-1, LI-190 quantum sensor, Li-Cor, Inc), soil temperature (107B thermistor, Campbell Scientific, Logan, Utah), and air temperature (107 thermistor, Campbell Scientific, Logan, Utah) at 5 locations each in three sites simultaneously. PPF and air temperature were measured at 50 cm, while soil temperature was measured 5 cm. The central sample station was located in the center (sub-plot D6) of the 30 x 50 m grid and four additional stations were positioned 10 m from the central station in the cardinal directions. In addition to the variables described above, relative humidity (%, 207 air temperature/relative humidity probe, Campbell Scientific, Logan, Utah) was measured at 50 cm at the central station. All sensors were connected to a Campbell Scientific 23X datalogger and sampled continuously every 10 sec and averaged every 10 minutes for 5 days at a time. The stations were switched between two sets of sites (P1-S2-W2 followed by P2-S1-W1) at the end of every week, so the data record for any one site includes alternate weeks. Measurements were made during April through September, 1997. The data archived here are daily means per variable per station. Missing records are due to inclement weather, while blank fields represent occasional sensor or datalogger connection problems.
DOI: 10.17632/v3cmsnfrnn.2
title: Integral reduction with Kira 2.0 and finite field methods

description: We present the new version 2.0 of the Feynman integral reduction program Kira and describe the new features. The primary new feature is the reconstruction of the final coefficients in integration-by-parts reductions by means of finite field methods with the help of FireFly. This procedure can be parallelized on computer clusters with MPI. Furthermore, the support for user-provided systems of equations has been significantly improved. This mode provides the flexibility to integrate Kira into projects that employ specialized reduction formulas, direct reduction of amplitudes, or to problems involving linear system of equations not limited to relations among standard Feynman integrals. We show examples from state-of-the-art Feynman integral reduction problems and provide benchmarks of the new features, demonstrating significantly reduced main memory usage and improved performance w.r.t. previous versions of Kira.
DOI: 10.6084/m9.figshare.12831002
title: Data for Characteristics of Plant Eating in Domestic Cats

description: Plant eating by domestic cats interests veterinarians and cat owners. As more cats are living totally indoors, grass gardens are commonly provided to cats, addressing cats’ needs for plant eating. Two surveys of cat owners were launched, testing important questions regarding plant eating, that plant eating: 1) is a response to the cat feeling ill; 2) induces vomiting; 3) is a means of expelling hair balls from consumed hair. Based on observations of wild felids, plant eating may reflect an innate predisposition acquired from the ancestral cat. This study found that very few cats showed signs of illness before eating plants. However, 27 to 37 percent of cats frequently vomited after eating grass; this suggests that gastrointestinal disturbance may be related to vomiting afterwards in some cats. Young cats consumed plants more frequently than older cats. Young cats also appeared ill and vomited less frequently than older cats in association with plant eating. Short-haired cats ate plants as frequently as long-haired cats, suggesting that plant eating is not for expelling hairballs. Some guidelines for cat owners with indoor cats are provided.
DOI: 10.6084/m9.figshare.12831002.v1
title: Data for Characteristics of Plant Eating in Domestic Cats

description: Plant eating by domestic cats interests veterinarians and cat owners. As more cats are living totally indoors, grass gardens are commonly provided to cats, addressing cats’ needs for plant eating. Two surveys of cat owners were launched, testing important questions regarding plant eating, that plant eating: 1) is a response to the cat feeling ill; 2) induces vomiting; 3) is a means of expelling hair balls from consumed hair. Based on observations of wild felids, plant eating may reflect an innate predisposition acquired from the ancestral cat. This study found that very few cats showed signs of illness before eating plants. However, 27 to 37 percent of cats frequently vomited after eating grass; this suggests that gastrointestinal disturbance may be related to vomiting afterwards in some cats. Young cats consumed plants more frequently than older cats. Young cats also appeared ill and vomited less frequently than older cats in association with plant eating. Short-haired cats ate plants as frequently as long-haired cats, suggesting that plant eating is not for expelling hairballs. Some guidelines for cat owners with indoor cats are provided.