cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19368512
title: Gaussian curvature dilutes the nuclear lamina, favoring nuclear rupture, especially at high strain rate

description: Nuclear rupture has long been associated with deficits or defects in lamins, with recent results also indicating a role for actomyosin stress, but key physical determinants of rupture remain unclear. Here, lamin-B filaments stably interact with the nuclear membrane at sites of low Gaussian curvature yet dilute at high curvature to favor rupture, whereas lamin-A depletion requires high strain-rates. Live-cell imaging of lamin-B1 gene-edited cancer cells is complemented by fixed-cell imaging of rupture in: iPS-derived progeria patients cells, cells within beating chick embryo hearts, and cancer cells with multi-site rupture after migration through small pores. Data fit a model of stiff filaments that detach from a curved surface.Rupture is modestly suppressed by inhibiting myosin-II and by hypotonic stress, which slow the strain-rates. Lamin-A dilution and rupture probability indeed increase above a threshold rate of nuclear pulling. Curvature-sensing mechanisms of proteins at plasma membranes, including Piezo1, might thus apply at nuclear membranes. <b>Summary statement:</b> High nuclear curvature drives lamina dilution and nuclear envelope rupture even when myosin stress is inhibited. Stiff filaments generally dilute from sites of high Gaussian curvature, providing mathematical fits of experiments.
DOI: 10.6084/m9.figshare.19368512.v2
title: Gaussian curvature dilutes the nuclear lamina, favoring nuclear rupture, especially at high strain rate

description: Nuclear rupture has long been associated with deficits or defects in lamins, with recent results also indicating a role for actomyosin stress, but key physical determinants of rupture remain unclear. Here, lamin-B filaments stably interact with the nuclear membrane at sites of low Gaussian curvature yet dilute at high curvature to favor rupture, whereas lamin-A depletion requires high strain-rates. Live-cell imaging of lamin-B1 gene-edited cancer cells is complemented by fixed-cell imaging of rupture in: iPS-derived progeria patients cells, cells within beating chick embryo hearts, and cancer cells with multi-site rupture after migration through small pores. Data fit a model of stiff filaments that detach from a curved surface.Rupture is modestly suppressed by inhibiting myosin-II and by hypotonic stress, which slow the strain-rates. Lamin-A dilution and rupture probability indeed increase above a threshold rate of nuclear pulling. Curvature-sensing mechanisms of proteins at plasma membranes, including Piezo1, might thus apply at nuclear membranes. <b>Summary statement:</b> High nuclear curvature drives lamina dilution and nuclear envelope rupture even when myosin stress is inhibited. Stiff filaments generally dilute from sites of high Gaussian curvature, providing mathematical fits of experiments.
DOI: 10.6084/m9.figshare.19368512.v1
title: Gaussian curvature dilutes the nuclear lamina, favoring nuclear rupture, especially at high strain rate

description: Nuclear rupture has long been associated with deficits or defects in lamins, with recent results also indicating a role for actomyosin stress, but key physical determinants of rupture remain unclear. Here, lamin-B filaments stably interact with the nuclear membrane at sites of low Gaussian curvature yet dilute at high curvature to favor rupture, whereas lamin-A depletion requires high strain-rates. Live-cell imaging of lamin-B1 gene-edited cancer cells is complemented by fixed-cell imaging of rupture in: iPS-derived progeria patients cells, cells within beating chick embryo hearts, and cancer cells with multi-site rupture after migration through small pores. Data fit a model of stiff filaments that detach from a curved surface.Rupture is modestly suppressed by inhibiting myosin-II and by hypotonic stress, which slow the strain-rates. Lamin-A dilution and rupture probability indeed increase above a threshold rate of nuclear pulling. Curvature-sensing mechanisms of proteins at plasma membranes, including Piezo1, might thus apply at nuclear membranes. <b>Summary statement:</b> High nuclear curvature drives lamina dilution and nuclear envelope rupture even when myosin stress is inhibited. Stiff filaments generally dilute from sites of high Gaussian curvature, providing mathematical fits of experiments.
DOI: 10.5281/zenodo.7494810
title: Dataset for the aerosol-ERF paper

description: This dataset contains the files utilized in computing aerosol-ERF from the GFDL model.
DOI: 10.5281/zenodo.7494811
title: Dataset for the aerosol-ERF paper

description: This dataset contains the files utilized in computing aerosol-ERF from the GFDL model.
DOI: 10.6084/m9.figshare.21803589
title: datav10.dat

description: Monitoring project.
DOI: 10.6084/m9.figshare.21803589.v1
title: datav10.dat

description: Monitoring project.
DOI: 10.6084/m9.figshare.21744608
title: Table 2. P. aeruginosa serotype distribution (n = 41, panel for genomic characterization).

description: O: serotype
DOI: 10.6084/m9.figshare.21744608.v2
title: Table 2. P. aeruginosa serotype distribution (n = 41, panel for genomic characterization).

description: O: serotype
DOI: 10.6084/m9.figshare.21744608.v1
title: Table 2. P. aeruginosa serotype distribution (n=41, panel for genomic characterization).

description: <em>O: serotype</em>
DOI: 10.6084/m9.figshare.21744605
title: Table 1. Distribution of the decreased-susceptibility-to-DDAC phenotype in the study panel (n = 168) according to the year of strain isolation, animal species, and sample type.

description: <em>p</em>-values of Fisher’s test of independence comparing the category against the rest of the population. DDAC: didecyldimethylammonium chloride; DS: decreased susceptibility.
DOI: 10.6084/m9.figshare.21744605.v3
title: Table 1. Distribution of the decreased-susceptibility-to-DDAC phenotype in the study panel (n = 168) according to the year of strain isolation, animal species, and sample type.

description: <em>p</em>-values of Fisher’s test of independence comparing the category against the rest of the population. DDAC: didecyldimethylammonium chloride; DS: decreased susceptibility.
DOI: 10.6084/m9.figshare.21744605.v2
title: Table 1. Distribution of the decreased-susceptibility-to-DDAC phenotype in the study panel (n = 168) according to the year of strain isolation, animal species, and sample type.

description: <em>p</em>-values of Fisher’s test of independence comparing the category against the rest of the population. DDAC: didecyldimethylammonium chloride; DS: decreased susceptibility.
DOI: 10.5281/zenodo.7154373
title: CESM2 MDM data for "Historical changes in wind driven ocean circulation can accelerate global warming" - submitted to GRL

description: CESM2 Experiment names: MD = mechanically decoupled model (referred to as MDM in paper), CESM2 FC = fully coupled model (referred to as FCM in paper), CESM2 Decoding file names: Variables that are a single value per time step (e.g. global means and globally integrated values) are given in dimensions of time by ensemble member. Variables that include values at every grid point at each point in time are provided with an ensemble mean trend and an ensemble standard deviation of the trend. ensmean refers to ensemble mean ensstd refers to ensemble standard deviation trend refers to linear trend over 1979-2014 annual refers to annual mean anomalies, relative to reference period of 1941-1970 Variables: aice = ice area AMOC = Atlantic meridional overturning circulation N_HEAT = northward heat transport BSF = barotropic streamfunction TREFHT = reference level air temperature Qnet = net surface heat flux (defined as FSNS - FLNS - LHFLX - SHFLX) TOA = top of atmosphere radiation TOAC = top of atmosphere radiation, clearsky FLNT = net longwave flux at top of model FLNTC = net longwave flux at top of model, clearsky FSUTOA = upwelling solar flux at top of atmosphere FSNTOA = net solar flux at top of atmosphere FSNTOAC = net solar flux at top of atmosphere, clearsky
description: This work is supported by NSF Grant AGS-1951713 (KM and SML). Additional information, including source code, is provided at https://doi.org/10.5281/zenodo.6678286
DOI: 10.5281/zenodo.7499333
title: Dataset related to article "Digital single-operator cholangioscopy in diagnostic and therapeutic bilio-pancreatic diseases: A prospective, multicenter study "

description: This record contains raw data related to article “Digital single-operator cholangioscopy in diagnostic and therapeutic bilio-pancreatic diseases: A prospective, multicenter study" <strong>Background and aim: </strong> Digital single-operator cholangioscopy (D-SOC) is an endoscopic procedure that is increasingly used for the management of bilio-pancreatic diseases. We aimed to investigate the efficacy and safety of D-SOC for diagnostic and therapeutic indications. <strong>Methods: </strong> This is a multicenter, prospective study(January 2016-June 2019) across eighteen tertiary centers. The primary outcome was procedural success of D-SOC. Secondary outcomes were: D-SOC visual assessment and diagnostic yield of SpyBite biopsy in cases of biliary strictures, stone clearance rate in cases of difficult biliary stones, rate of adverse events(AEs) for all indications. <strong>Results: </strong> D-SOC was performed in 369 patients (201(54,5%) diagnostic and 168(45,5%)therapeutic). Overall, procedural success rate was achieved in 360(97,6%) patients. The sensitivity, specificity, PPV, NPV and accuracy in biliary strictures were: 88,5%, 77,3%, 83,3%, 84,1% and 83,6% for D-SOC visual impression; 80,2%, 92,6%, 95,1%, 72,5% and 84,7% for the SpyBite biopsy, respectively. For difficult biliary stones, complete duct clearance was obtained in 92,1% patients (82,1% in a single session). Overall, AEs occurred in 37(10%) cases.The grade of AEs was mild or moderate for all cases, except one which was fatal. <strong>Conclusion: </strong> D-SOC is effective for diagnostic and therapeutic indications.Most of the AEs were minor and managed conservatively, even though a fatal event has happened that is not negligible and should be considered before using D-SOC.
DOI: 10.5281/zenodo.7499332
title: Dataset related to article "Digital single-operator cholangioscopy in diagnostic and therapeutic bilio-pancreatic diseases: A prospective, multicenter study "

description: This record contains raw data related to article “Digital single-operator cholangioscopy in diagnostic and therapeutic bilio-pancreatic diseases: A prospective, multicenter study" <strong>Background and aim: </strong> Digital single-operator cholangioscopy (D-SOC) is an endoscopic procedure that is increasingly used for the management of bilio-pancreatic diseases. We aimed to investigate the efficacy and safety of D-SOC for diagnostic and therapeutic indications. <strong>Methods: </strong> This is a multicenter, prospective study(January 2016-June 2019) across eighteen tertiary centers. The primary outcome was procedural success of D-SOC. Secondary outcomes were: D-SOC visual assessment and diagnostic yield of SpyBite biopsy in cases of biliary strictures, stone clearance rate in cases of difficult biliary stones, rate of adverse events(AEs) for all indications. <strong>Results: </strong> D-SOC was performed in 369 patients (201(54,5%) diagnostic and 168(45,5%)therapeutic). Overall, procedural success rate was achieved in 360(97,6%) patients. The sensitivity, specificity, PPV, NPV and accuracy in biliary strictures were: 88,5%, 77,3%, 83,3%, 84,1% and 83,6% for D-SOC visual impression; 80,2%, 92,6%, 95,1%, 72,5% and 84,7% for the SpyBite biopsy, respectively. For difficult biliary stones, complete duct clearance was obtained in 92,1% patients (82,1% in a single session). Overall, AEs occurred in 37(10%) cases.The grade of AEs was mild or moderate for all cases, except one which was fatal. <strong>Conclusion: </strong> D-SOC is effective for diagnostic and therapeutic indications.Most of the AEs were minor and managed conservatively, even though a fatal event has happened that is not negligible and should be considered before using D-SOC.
DOI: 10.5281/zenodo.7223446
title: OpenEarthMap: A Benchmark Dataset for Global High-Resolution Land Cover Mapping

description: <strong>Project Page</strong> https://open-earth-map.org/ <strong>Paper</strong> https://arxiv.org/abs/2210.10732 <strong>Overview</strong> OpenEarthMap is a benchmark dataset for global high-resolution land cover mapping. OpenEarthMap consists of 5000 aerial and satellite images with manually annotated 8-class land cover labels and 2.2 million segments at a 0.25-0.5m ground sampling distance, covering 97 regions from 44 countries across 6 continents. OpenEarthMap fosters research including but not limited to semantic segmentation and domain adaptation. Land cover mapping models trained on OpenEarthMap generalize worldwide and can be used as off-the-shelf models in a variety of applications. <strong>Reference</strong> <pre><code>@inproceedings{xia_2023_openearthmap, title = {OpenEarthMap: A Benchmark Dataset for Global High-Resolution Land Cover Mapping}, author = {Junshi Xia and Naoto Yokoya and Bruno Adriano and Clifford Broni-Bediako}, booktitle = {Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision (WACV)}, month = {January}, year = {2023}, pages = {6254-6264} }</code></pre> <strong>License</strong> Label data of OpenEarthMap are provided under the same license as the original RGB images, which varies with each source dataset. For more details, please see the attribution of source data here. Label data for regions where the original RGB images are in the public domain or where the license is not explicitly stated are licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. <strong>Note for xBD data</strong> The RGB images of xBD dataset are not included in the OpenEarthMap dataset. Please download the xBD RGB images from https://xview2.org/dataset and add them to the corresponding folders. The "xbd_files.csv" contains information about how to prepare the xBD RGB images and add them to the corresponding folders. <strong>Code</strong> Sample code to add the xBD RGB images to the distributed OpenEarthMap dataset and to train baseline models is available here. <strong>Leaderboard</strong> Performance on the test set can be evaluated on the Codalab webpage.
DOI: 10.5281/zenodo.7223445
title: OpenEarthMap: A Benchmark Dataset for Global High-Resolution Land Cover Mapping

description: <strong>Project Page</strong> https://open-earth-map.org/ <strong>Paper</strong> https://arxiv.org/abs/2210.10732 <strong>Overview</strong> OpenEarthMap is a benchmark dataset for global high-resolution land cover mapping. OpenEarthMap consists of 5000 aerial and satellite images with manually annotated 8-class land cover labels and 2.2 million segments at a 0.25-0.5m ground sampling distance, covering 97 regions from 44 countries across 6 continents. OpenEarthMap fosters research including but not limited to semantic segmentation and domain adaptation. Land cover mapping models trained on OpenEarthMap generalize worldwide and can be used as off-the-shelf models in a variety of applications. <strong>Reference</strong> <pre><code>@inproceedings{xia_2023_openearthmap, title = {OpenEarthMap: A Benchmark Dataset for Global High-Resolution Land Cover Mapping}, author = {Junshi Xia and Naoto Yokoya and Bruno Adriano and Clifford Broni-Bediako}, booktitle = {Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision (WACV)}, month = {January}, year = {2023}, pages = {6254-6264} }</code></pre> <strong>License</strong> Label data of OpenEarthMap are provided under the same license as the original RGB images, which varies with each source dataset. For more details, please see the attribution of source data here. Label data for regions where the original RGB images are in the public domain or where the license is not explicitly stated are licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. <strong>Note for xBD data</strong> The RGB images of xBD dataset are not included in the OpenEarthMap dataset. Please download the xBD RGB images from https://xview2.org/dataset and add them to the corresponding folders. The "xbd_files.csv" contains information about how to prepare the xBD RGB images and add them to the corresponding folders. <strong>Code</strong> Sample code to add the xBD RGB images to the distributed OpenEarthMap dataset and to train baseline models is available here. <strong>Leaderboard</strong> Performance on the test set can be evaluated on the Codalab webpage.
DOI: 10.6084/m9.figshare.21746018
title: Table S1: Characteristics of the strains used in the study (Part 1) and for genomic characterization (Part 2).

description: Characteristics of the strains used
DOI: 10.6084/m9.figshare.21746018.v2
title: Table S1: Characteristics of the strains used in the study (Part 1) and for genomic characterization (Part 2).

description: Characteristics of the strains used
DOI: 10.6084/m9.figshare.21746018.v1
title: Table S1: Characteristics of the strains used in the study (Part 1) and for genomic characterization (Part 2).

description: Characteristics of the strains used
DOI: 10.6084/m9.figshare.21803454
title: HiP_map

description: Mask file for the study area
DOI: 10.6084/m9.figshare.21803454.v1
title: HiP_map

description: Mask file for the study area
DOI: 10.6084/m9.figshare.21803478
title: Simulation

description: Simulated dataset : we used localGibbs movement model to simulate animal trajectories (100 per landscape x 100 landscapes) with known coefficient of habitat selection and used time-varying HSA to estimate theses coefficients. <br> data_rsf_parameter contains the expected and estimated coefficient for each simulated trajectories (x,y,t), according to the model parameter Q used for the estimation, and for each replication. <br> simulated_data_nstep250_... contains the simulated coordinates for "rare change scenario" and _20_ for "frequent change scenario" <br> habitat_raster contains the simulated habitat landscape used for each replication and each scenario <br> data_tRSF_Q... contains the same info than data_rsf_parameter but for each scenario-replication, rbind them to obtain data_rsf_parameter <br> Because of size, we provide the simulations for the first 30 replications only.
DOI: 10.17909/mph3-3a33
title: RN on HD 207857
DOI: 10.5281/zenodo.7499371
title: Dataset related to article "Use of high-resolution micro-ultrasound to predict extraprostatic extension of prostate cancer prior to surgery: a prospective single-institutional study "

description: This record contains raw data related to article “Use of high-resolution micro-ultrasound to predict extraprostatic extension of prostate cancer prior to surgery: a prospective single institutional study" <strong>Purpose: </strong> We aim to evaluate the accuracy of micro-ultrasound (microUS) in predicting extraprostatic extension (EPE) of Prostate Cancer (PCa) prior to surgery. <strong>Methods: </strong> Patients with biopsy-proven PCa scheduled for robot-assisted radical prostatectomy (RARP) were prospectively recruited. The following MRI-derived microUS features were evaluated: capsular bulging, visible breach of the prostate capsule (visible extracapsular extension; ECE), presence of hypoechoic halo, and obliteration of the vesicle-prostatic angle. The ability of each feature to predict EPE was determined. <strong>Results: </strong> Overall, data from 140 patients were examined. All predictors were associated with non-organ-confined disease (p &lt; 0.001). Final pathology showed that 79 patients (56.4%) had a pT2 disease and 61 (43.3%) ≥ pT3. Rate of non-organ-confined disease increased from 44% in those individuals with only 1 predictor (OR 7.71) to 92.3% in those where 4 predictors (OR 72.00) were simultaneously observed. The multivariate logistic regression model including clinical parameters showed an area under the curve (AUC) of 82.3% as compared to an AUC of 87.6% for the model including both clinical and microUS parameters. Presence of ECE at microUS predicted EPE with a sensitivity of 72.1% and a specificity of 88%, a negative predictive value of 80.5% and positive predictive value of 83.0%, with an AUC of 80.4%. <strong>Conclusions: </strong> MicroUS can accurately predict EPE at the final pathology report in patients scheduled for RARP.
DOI: 10.5281/zenodo.7499370
title: Dataset related to article "Use of high-resolution micro-ultrasound to predict extraprostatic extension of prostate cancer prior to surgery: a prospective single-institutional study "

description: This record contains raw data related to article “Use of high-resolution micro-ultrasound to predict extraprostatic extension of prostate cancer prior to surgery: a prospective single institutional study" <strong>Purpose: </strong> We aim to evaluate the accuracy of micro-ultrasound (microUS) in predicting extraprostatic extension (EPE) of Prostate Cancer (PCa) prior to surgery. <strong>Methods: </strong> Patients with biopsy-proven PCa scheduled for robot-assisted radical prostatectomy (RARP) were prospectively recruited. The following MRI-derived microUS features were evaluated: capsular bulging, visible breach of the prostate capsule (visible extracapsular extension; ECE), presence of hypoechoic halo, and obliteration of the vesicle-prostatic angle. The ability of each feature to predict EPE was determined. <strong>Results: </strong> Overall, data from 140 patients were examined. All predictors were associated with non-organ-confined disease (p &lt; 0.001). Final pathology showed that 79 patients (56.4%) had a pT2 disease and 61 (43.3%) ≥ pT3. Rate of non-organ-confined disease increased from 44% in those individuals with only 1 predictor (OR 7.71) to 92.3% in those where 4 predictors (OR 72.00) were simultaneously observed. The multivariate logistic regression model including clinical parameters showed an area under the curve (AUC) of 82.3% as compared to an AUC of 87.6% for the model including both clinical and microUS parameters. Presence of ECE at microUS predicted EPE with a sensitivity of 72.1% and a specificity of 88%, a negative predictive value of 80.5% and positive predictive value of 83.0%, with an AUC of 80.4%. <strong>Conclusions: </strong> MicroUS can accurately predict EPE at the final pathology report in patients scheduled for RARP.
DOI: 10.3886/e100426v5-131560
title: Indiana University Sexual Diversity Study

description: In 2015, we conducted a cross-sectional, Internet-based U.S. nationally representative probability survey of 2,021 adults (975 men, 1,046 women) focused on a broad range of sexual behaviors. Participants reported on demographic items, lifetime and recent sexual behaviors, and the appeal of 50+ sexual behaviors. Most (&gt;80%) reported lifetime masturbation, vaginal sex, and oral sex. Lifetime anal sex was reported by 43% of men (insertive) and 37% of women (receptive). Common lifetime sexual behaviors included wearing sexy lingerie/underwear (75% women, 26% men), sending/receiving digital nude/semi-nude photos (54% women, 65% men), reading erotic stories (57% of participants), public sex (≥43%), role-playing (≥22%), tying/being tied up (≥20%), spanking (≥30%), and watching sexually explicit videos/DVDs (60% women, 82% men). Threesomes (10% women, 18% men) and playful whipping (≥13%) were less common. Lifetime group sex, sex parties, taking a sexuality class/workshop, and going to BDSM parties were uncommon (&lt;8%). More Americans identified behaviors as “appealing” than had engaged in them. Romantic/affectionate behaviors were among those most commonly identified as appealing for both men and women. With the exception of anal sex, the appeal of particular behaviors was associated with greater odds that the individual had ever engaged in the behavior.
DOI: 10.5281/zenodo.7499429
title: datasat literatur review online business AND air travel

description: DATA INI DIGUNAKAN UNTUK MEMBUAT PENELITIAN BERDASARKAN TINJAUAN LITERATUR DENGAN KATA KUNCI "ONLINE BUSINESS" dan "air travel"