cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25096640.v1
title: topoDL: A deep learning semantic segmentation dataset for the extraction of surface mine extents from historic USGS topographic maps

description: Input topographic maps, surface mine extents, and quad boundaries used in the following study:Maxwell, A.E., M.S. Bester, L.A. Guillen, C.A. Ramezan, D.J. Carpinello, Y. Fan, F.M. Hartley, S.M. Maynard, and J.L. Pyron, 2020. Semantic segmentation deep learning for extracting surface mine extents from historic topographic maps, <i>Remote Sensing</i>, 12(24): 1-25. https://doi.org/10.3390/rs12244145.Associated code and descriptions of the data are provided on GitHub: https://github.com/maxwell-geospatial/topoDL. The surface mine extent data were obtained from the USGS prospect- and mine-related features from USGS topographic maps dataset: https://mrdata.usgs.gov/usmin/. Topographic maps were downloaded from TopoView/The National Map. We have simply prepared the data for easier ingestion into deep learning semantic segmentation workflows by aligning the vector polygon data with the associated topographic map and including topographic map boundaries to remove the collar information. Vector data can be rasterized and combined with the topographic maps to generate image chips and masks for semantic segmentation deep learning.The chip prep script on GitHub can be used to create chips and masks from these data. This compressed folder contains the following subfolders (ky_mines, ky_quads, ky_topos, oh_mines, oh_quads, oh_topos, va_mines, va_quads, va_topos). The mines folders contain the mine extents for each topographic map used in the study while the quads folders contain the quadrangle boundaries. All vector data are in shapefile format. The topos folders contain the topographic maps in TIFF format.
DOI: 10.6084/m9.figshare.4748188.v1
title: Supplementary Material for: Simultaneous Assessment of Airway Instability and Respiratory Dynamics with Low-Dose 4D-CT in Chronic Obstructive Pulmonary Disease: A Technical Note

description: <strong><em>Background: </em></strong>Advanced-stage chronic obstructive pulmonary disease (COPD) is associated with severely altered respiratory dynamics. Dynamic airway instability is usually diagnosed by invasive bronchoscopy. Cine-computed tomography (CT) may be used alternatively, but is limited to predefined anatomical positions. Also, a paradoxical diaphragmatic motion has been described in patients with emphysema. <b><i>Objectives:</i></b> As the airways and chest wall show inherently high contrast to airway lumen and lung tissue, low-dose CT acquisitions potentially suffice for depicting tracheobronchial and chest wall motion. Therefore, we propose low-dose dynamic respiratory-gated multidetector CT (4D-CT) of the whole chest as a new method to assess respiratory dynamics. <b><i>Methods:</i></b> 4D-CT was performed in 3 patients (52, 62 and 76 years old) with suspected tracheal instability due to COPD or tracheal stenosis at minimal pitch (0.09) and radiation exposure (1.4-1.9 mSv) during regular tidal breathing registered by a belt system. Image reconstruction involved a raw data-based iterative algorithm (1.5-mm slice thickness, 1.0-mm z-axis increment, 5% respiratory increment), resulting in a stack of 6,700 images, which were evaluated with a 4D-viewing tool. <b><i>Results:</i></b> An excessive dynamic collapse of the trachea in combination with tracheobronchomalacia (TBM) of the main-stem and segmental bronchi, and a paradoxical diaphragmatic motion were demonstrated in 1 case. Moreover, we detected a saber-sheath trachea and main-stem TBM in another case. The third case showed a fixed tracheal stenosis. <b><i>Conclusions:</i></b> 4D-CT provides unprecedented z-axis coverage and time-resolved volumetric datasets of the whole chest. Airway instability, stenosis and paradoxical diaphragmatic motion may be assessed simultaneously, preceding interventions such as airway stabilization or lung volume reduction.
DOI: 10.6084/m9.figshare.5833797.v1
title: Figure 6

description: Data corresponding to figure 6
DOI: 10.6084/m9.figshare.25257052.v2
title: We're Drifting Apart: Architectural Drift from the Developers' Perspective

description: The artifact contains all the data we used to write the article. We can divide the data into two categories, the first concerning the interviews and the second concerning the Survey. For reasons of privacy we were unable to make the transcripts of the interviews public. However, the results of the survey for each participant are public, these data have been anonymized by removing any information that could have been traced back to the survey participant.
DOI: 10.6084/m9.figshare.21904080.v1
title: Means and SD.pdf

description: Means and SD refering to the analysis of peer-assessment of university students
DOI: 10.6084/m9.figshare.11994117.v1
title: Statistical analysis from Positive correlations in species functional contributions drive the response of multifunctionality to biodiversity loss

description: Statistical results of the effect of extinction order and correlation structure on the change in multifunctionality per species added
DOI: 10.6084/m9.figshare.26955595.v1
title: Reaction time data

description: Tables (csv) containing temporal points of MEG continuous data when stimulus presentation and subject response occurred (for each limb separately). Reaction times (ms) can be obtained by subtracting one from the other.
DOI: 10.6084/m9.figshare.24541987.v1
title: Supplementary Material for: Validation and development of Voice Handicap Index-Throat (VHI-T) for Koreans

description: Introduction: This study aimed to develop, validate, and analyze the reliability of the Korean version of the Voice Handicap Index-Throat (VHI-Tk). Methods: This prospective study included 103 patients in the case group with voice problems (18 with functional dysphonia, 44 with mass in the larynx, 18 with neurological voice disorder, 23 with throat problems) and 27 in the control group without voice problems. All participants completed these questionnaires at their initial visit: the Korean version of the Voice Handicap Index (K-VHI), VHI-Tk, and the Korean version of the Voice Symptom Scale (K-VoiSS). Case group patients in the case group re-completed the VHI-Tk questionnaire to assess test-retest reliability. Finally, a one-way analysis of variance was implemented to assess differences in VHI-Tk scores among the four diagnosis types in the case group. Results: The VHI-Tk scores in the case group were significantly higher than in the control group. The VHI-Tk was significantly correlated with the subscales of K-VHI and K-VoiSS. The VHI-Tk has significant test-retest reliability, and its internal consistency is good to excellent (Cronbach's alpha correlation coefficient range: 0.895–0.901). There was significant difference in the mean VHI-Tk scores according to the four diagnosis types (throat problems group &gt; neurological voice disorder group). Conclusion: We validated the VHI-T questionnaire to measure self-perceived voice and throat problems among Koreans. A large sample size and various diagnosis types are required in future studies to fully validate the VHI-T for use in multiple cultures.
DOI: 10.6084/m9.figshare.14501985.v2
title: Single-nuclei ATAC-Seq data from human atherosclerosis

description: <b>Summary</b><br><br>Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit. The files were produced by the cellranger-atac v1.1 pipeline commands 'count' and 'aggr' (without normalization). The genome reference used was hg19 Reference v1.1.0. <br><br><br><b>Journal publication</b><br>Single-Cell Epigenomics and Functional Fine-Mapping of Atherosclerosis GWAS Loci<br>Tiit Örd, Kadri Õunap, Lindsey Stolze, Rédouane Aherrahrou, Valtteri Nurminen, Ilakya Selvarajan, Anu Toropainen, Tapio Lönnberg, Einari Aavik, Seppo Yla-Herttuala, Mete Civelek, Casey E Romanoski, and Minna U Kaikkonen<br>Circulation Research, https://www.ahajournals.org/doi/abs/10.1161/CIRCRESAHA.121.318971<br><br><br><br><b>Files available</b><br>The file formats are described in detail at https://support.10xgenomics.com/single-cell-atac/software/pipelines/1.1/output/overview<br><b>1) cloupe-manual_cell_type_added.cloupe: </b><br>Loupe browser file for interactive browsing of the data. Includes a manual cell annotation into five principal cell lineages (smooth muscle cells, endothelial cells, macrophages, T/NK cells, and B/Plasma cells. For an overview of the Loupe Cell Browser ATAC software, please see https://support.10xgenomics.com/single-cell-atac/software/visualization/latest/what-is-loupe-cell-browser<br><br><b>2) fragments.tsv.gz and fragments.tsv.gz.tbi: </b><br>Fragments file and the corresponding index file. Contains ATAC fragment locations (cut sites) from the hg19 genome and the cell barcode associated with the fragment. Used for displaying coverage of cuts in genomic regions, and could be used for recalling of peaks. For full information of the table structure, please see https://support.10xgenomics.com/single-cell-atac/software/pipelines/1.1/output/fragments<br><b><br></b><b>3) matrix.mtx, peaks.bed and barcodes.tsv: </b><br>the peak-barcode matrix for cell-associated barcodes (contents of the "filtered_peak_bc_matrix" folder from cellranger-atac). Suitable for downstream analysis. For a full description of the matrix structure, please see https://support.10xgenomics.com/single-cell-atac/software/pipelines/1.1/output/matrices<br><br><b>4) peak_annotation.tsv: </b><br>annotations for the peaks called by cellranger-atac. For a description of how peaks were annotated to genes, please see https://support.10xgenomics.com/single-cell-atac/software/pipelines/1.1/output/annotation<br><br><br>
DOI: 10.6084/m9.figshare.13567538.v1
title: Raw spiking data

description: Raw spiking neurons recorded from vS1.<br>The Data is a Matlab Cell file.<br>Each column (123 columns) is an individual neuron.Each row (7 rows) is one intensity value. intensity values are [ 43, 53, 65, 80, 98, 120, 148] mm/s.<br>Each cell contains a trials X time (1001 ms) matrix indicating the presence or not of a spike (0/1) at each time point.<br><br><br>
DOI: 10.6084/m9.figshare.24804894.v4
title: Data for paper: Learning interpretable dynamics of stochastic complex systems from experimental data

description: All data for paper: Learning interpretable dynamics of stochastic complex systems from experimental data
DOI: 10.6084/m9.figshare.5949988.v1
title: High_caloric_diet_sleep

description: Datasets for article ''Chronic high-caloric diet modifies sleep homeostasis in mice''.<br>
DOI: 10.6084/m9.figshare.24194529.v1
title: RC_CMU-PCP-19819_GZ

description: This file contains 19,819 geographic positions of mobile users situated within the geographical zone of Tula de Allende, Hidalgo, Mexico. These mobile user positions were generated using a Poisson cluster process (PCP) distribution.
DOI: 10.6084/m9.figshare.1531937.v4
title: 140701 - Airport Access - Airport Mobile Website and Apps Adoption

description: Includes the adoption of the airports websites and mobile Apps (iPhone and Android) as in year 2014. It includes another details of the mobile Apps (date of the first version, date of the last version, number of updates, size, etc.) Data used on the Paper: Martin-Domingo, L., & Martin, J. C. (2015). Airport Surface Access and Mobile Apps. Journal of Airline and Airport Management, 5(1), 1–17. http://doi.org/10.3926/jairm.38
DOI: 10.6084/m9.figshare.8188667.v2
title: Supplemental Data S1-S3 and S26-S37 (i.e., Student and Professor Survey Questions and Results as well as statistical analyses of the data).

description: Questions and Results resulting from the Game testing
DOI: 10.6084/m9.figshare.12568637.v1
title: Gene database of Klebsiella pneumoniae

description: <i>Klebsiella pneumoniae </i>is a Gram-negative, facultative anaerobic, non-motile bacterium whose natural habitat is the soil environment. Also present in human mouth, skin and gastrointestinal tract, <i>K. pneumoniae</i> is a significant pathogen when in the lungs, where it results in distinctive sputum. Implicated in nosocomial infections, the bacterium remains a subject of intense study, where one pertinent research topic is in understanding how immunocompromised patients may be affected by the pathogen. This work sought to provide a resource of the genetic repertoire of <i>K. pneumoniae</i> based on the annotated genome sequence downloaded from Genbank. Comprising gene name, gene function and gene sequence of all genes in the genome of <i>K. pneumoniae</i>, the dataset should find use in guiding genome editing studies in generating loss-of-function mutants for understanding the pathogenesis mechanisms of this important pathogen.
DOI: 10.6084/m9.figshare.25486387.v3
title: Malabar grouper (Epinephelus malabaricus) genome resources

description: We assembled a chromosome-scale genome of malabar grouper (Epinephelus malabaricus) and conducted a transcriptomic analysis of nine larval developmental stages.<br>This repository contains the gene models in the form of a gtf file, the functional annotations of the gene models in the form of a tsv file, and the transcriptomic and proteomic data as fasta files.
DOI: 10.6084/m9.figshare.29090081.v1
title: Shipping noise tolerance in invertebrates: A case study of the shore crab <i>Hemigrapsus oregonensis</i>

description: <br><br>Data supporting Birch et al. "Shipping noise tolerance in invertebrates: A case study of the shore crab <i>Hemigrapsus oregonensis</i>"
DOI: 10.6084/m9.figshare.14176920.v1
title: Data file from Evidence that bottlenose dolphins can communicate with vocal signals to solve a cooperative task

description: Source data for analyses
DOI: 10.6084/m9.figshare.14452992.v1
title: BOLD_braconid_datasets

description: Datasets used for reply to Sharkey et al. 2021
DOI: 10.6084/m9.figshare.19714591.v2
title: PGS weights for evaluation of polygenic scoring methods in five biobanks

description: These files contain polygenic (risk) score (PGS/PRS) weights from 7 methods produced with prspipe (https://github.com/intervene-EU-H2020/prspipe). Variant positions and reference alleles can be found in the prspipe repository (HapMap3-1KG variants). A subset of these scores were evaluated in Monti et al. [1], and are made available on the PGS catalog (https://www.pgscatalog.org/publication/PGP000517/).Scores are based on GWAS summary statistics hosted on the NHGRI-EBI GWAS Catalog (https://www.ebi.ac.uk/gwas/home) under CC0 license unless stated there otherwise. When using these scores, please cite the studies which provided the summary statistics (identifiers starting with <i>GCST</i>), as well as the manuscript [1] and tool used to create the score.[1] Monti, Remo, et al. "Evaluation of polygenic scoring methods in five biobanks reveals greater variability between biobanks than between methods and highlights benefits of ensemble learning." <i>medRxiv</i> (2023): 2023-11.<br><br>The scores for p-value thresholding followed and clumping (pt_clump) provided here are not nested. To make these scoring files nested, the following command can be used:<br><br>zcat INFILE | awk '{ if(NR==1){for(i=3; i&lt;=NF; i++){$i=$i"_nested"}; print $0} else{for(i=3; i&lt;=NF; i++){ if(c){$i = c}; if($i != 0){c = $i}}; print $0; c=0}}' | gzip &gt; OUTFILE<br><br>where INFILE should be the path to the input file (e.g. prs/pt_clump/GCST008059/1KGPhase3.w_hm3.GCST008059.score.gz) and OUTFILE is the the path to the output file.<br>
DOI: 10.6084/m9.figshare.23783631.v1
title: Adipocyte precursors by single-cell RNA-seq at P21 in mouse skin adipose tissue

description: 14,478 single-cells; whole transcriptomic data after quality control and filtering and other processing. 10X Genomics. Capybara scores and identities are included with Merrick et al. (2019) used as reference. See Figure 1 in https://www.biorxiv.org/content/10.1101/2023.06.01.543318v1
DOI: 10.6084/m9.figshare.28082246.v1
title: Repository - Laminar Turbulent behavior in shear-thickening channel flow

description: First, second order statistics and stress budget.
DOI: 10.6084/m9.figshare.5675032.v1
title: flowering time -raw data.xlsx

description: these are raw data for the paper. it including flowering time of <i>Arabidopsis thaliana </i>and raw data of RT-qPCR experiment.
DOI: 10.6084/m9.figshare.28603001.v1
title: An open paradigm dataset for intelligent monitoring of underground drilling operations in coal mines

description: In the field of coal mine safety monitoring and automation, high-quality and specialized datasets are crucial for the development and validation of artificial intelligence algorithms. Currently, there is no comprehensive benchmark dataset specifically for coal mine industrial scenarios, which significantly limits the research progress of AI algorithms in the coal mining industry. This study has constructed for the first time a benchmark dataset (DsDPM 66) specifically for coal mine heading faces, containing 105,096 images obtained from videos of 66 drilling operation scenes. The dataset has been meticulously annotated manually to suit computer vision tasks such as object detection and pose estimation. In addition, this study conducted extensive benchmarking experiments on this dataset, applying various advanced AI algorithms including but not limited to YOLOv8 and DETR. The experimental results show that the proposed dataset can effectively improve the accuracy of various object detection and pose estimation models in coal mines, filling the data gap in the coal mining field and providing valuable resources for the development of coal mine safety monitoring and automation technologies.
DOI: 10.6084/m9.figshare.23831289.v1
title: Mound architecture and season affect concentrations of CO<sub>2</sub>, CH<sub>4</sub> and N<sub>2</sub>O in nests of African fungus-growing termites

description: Data includes concentrations (ppm/ppb) of CH<sub>4</sub>, CO<sub>2</sub> and N<sub>2</sub>O measured from a total of 132 samples originating from 30 different termite mounds from Taita-Taveta, Kenya. Gas samples were collected during three different field campaigns in 2019 and 2021. Gas concentrations were measured at the Mazingira Centre for Environmental Research and Education, International Livestock Research Institute (ILRI, Nairobi, Kenya) using an SRI 8610C gas chromatograph (SRI Instruments Europe GmbH, Bad Honnef, Germany) with two HayeSep D packed columns (3 m length, 1/8 in. diameter), one of which was connected to an electron-capture detector (ECD, temperature 350 °C) for N<sub>2</sub>O detection, and the other to a flame-ionization detector (FID, temperature 350 °C) for CO<sub>2</sub> and CH<sub>4</sub> detection.Data is linked to publicationVesala, R., Räsänen, M., Leitner, S., Mulat, D. G., Mwangala, L., Rikkinen, J., Arppe, L. 2023. Mound architecture and season affect concentrations of CO<sub>2</sub>, CH<sub>4</sub> and N<sub>2</sub>O in nests of African fungus-growing termites. Ecological Entomology, doi: 10.1111/een.13267.
DOI: 10.15468/dl.m57rqj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia innesi (Fowler, 1934)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-9.5482 4.7175,-9.0352 4.4397,-9.0352 10.8496,-16.709 10.8496,-16.3297 10.5455,-15.1301 10.2973,-14.7679 9.8172,-14.3248 9.5834,-14.2456 9.1632,-13.8032 8.9309,-13.7341 8.0101,-13.3252 7.2036,-11.9532 6.6399,-11.0468 5.863,-10.545 5.6439,-9.5482 4.7175))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013498-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.28148114.v1
title: Dormancy and Germination Characteristics of <i>Cardamine impatiens</i> Seeds

description: Seasonal changes in the germinability of <i>Cardamine impatiens</i> seeds were studied by exhuming buried seeds monthly and incubating them under laboratory conditions for a consecutive 30 months, as well as examining the effects of temperature on the transition of dormancy status in the laboratory.
DOI: 10.6084/m9.figshare.6820190.v1
title: Data base - sun exposure

description: This dataset is product of a cross-sectional study in the Pimentel beach, Peru. Pimentel is one of the main beaches in the northern Peru and belongs to Lambayeque, which is considered a semi-warm and tropical-dry region, with temperatures that exceed 30°C during summer.<br>In 2018, we surveyed all the beachgoers from 8 a.m. to 4 p.m. and from March 5 to March 19 (Peruvian summer). No sample was calculated. We surveyed all Spanish-speaking adults aged 18 to 59 who were in the study place within the specified time range.
DOI: 10.6084/m9.figshare.24580585.v1
title: Structural equation models code

description: Code and data for structural equation models behind Fig. 4.
DOI: 10.6084/m9.figshare.12086103.v1
title: Platelet functional diversity flow cytometry data

description: This is the raw cytometry data as .csv files that compare the behaviour of platelet collectives to single platelets (encapsulated in droplets) following stimulation with convulxin, TRAP-14 and ADP. The file names relate to each of the figures (article and supplementary) of the publication.
DOI: 10.6084/m9.figshare.14298107.v2
title: Characteristics and Mechanisms of Cross-Platform Information Diffusion in Social Media

description: 《社交媒体中的跨平台信息扩散特征及机制研究》的支撑数据：ParameterComparison.zip. 跨平台与非跨平台微博参数的对比；DepthScaleURL.zip. 含URL和不含URL的微博扩散深度和规模；DepthScaleURLType.zip. 含有不同类型链接的微博扩散深度和规模；DepthScaleURLVideo.zip. URL为视频的微博扩散深度和规模；DepthScaleURLArticle.zip. URL为文章的微博扩散深度和规模；DepthScaleURLNews.zip. URL为新闻的微博扩散深度和规模；RegressionURLType.zip. 考虑不同大类来源平台的回归分析；RegressionURLVideo.zip. 考虑不同视频来源平台的回归分析；RegressionURLArticle.zip. 考虑不同文章来源平台的回归分析；RegressionURLNews.zip. 考虑不同新闻来源平台的回归分析.
DOI: 10.6084/m9.figshare.28823996.v3
title: 甲基苯丙胺和 HIV-1 Tat 通过 TRPM2 介导的星形胶质细胞炎症协同破坏血脑屏障

description: METH 和 Tat 可以通过激活星形胶质细胞 TRPM2 离子通道来协调介导星形胶质细胞驱动的炎症，从而导致 BBB 损伤。这些发现强调星形胶质细胞介导的炎症是 METH 和 Tat 协同损害 BBB 的重要机制，TRPM2 通道代表了一个有前途的治疗靶点，为 METH 和 HIV-1 Tat 蛋白引起的神经毒性机制提供了新的见解。
DOI: 10.6084/m9.figshare.23904903.v1
title: LogisticRegression scores

description: The datasets presented in this repository are obtained by applying the logistic regression (<i>LogisticRegression</i>) algorithm with the following specific hyperparameter setting and the different inputs that ,have been described in the journal paper: "<b>Data mining techniques for endometriosis detection in a data-scarce medical dataset</b>".HyperparametersC: 1Solver: liblinearmax_iter: 1000000Files<b>result_eb.csv</b>: Results for EB sample type.<b>result_ef.csv</b>: Results for EF sample type.<b>result_vagina.csv</b>: Results for vagina sample type.<b>result_oral.csv</b>: Results for oral sample type.<b>result_feces.csv</b>: Results for feces sample type.<b>result_frt.csv</b>: Results for FRT (EB + EF + vagina) sample type.<b>result_frt2.csv</b>: Results for FRT2 (EB + vagina) sample type.<b>properties_eb.log</b>: Arguments and result information for EB sample type (C, n_split, solver, max_iter, random_state, len_scores_before_filtering, len_scores_after_filtering, len_f1).<b>properties_ef.log</b>: Arguments and result information for EF sample type.<b>properties_vagina.log</b>: Arguments and result information for vagina sample type.<b>properties_oral.log</b>: Arguments and result information for oral sample type.<b>properties_feces.log</b>: Arguments and result information for feces sample type.<b>properties_frt.log</b>: Arguments and result information for FRT sample type.<b>properties_frt2.log</b>: Arguments and result information for FRT2 sample type.<br>