cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24612291
title: Supplementary Material for: Sampling from extracorporeal circuit: a step forward for dose monitoring in CRRT

description: Introduction: 
Continuous renal replacement therapies (CRRT) require constant monitoring and periodic treatment readjustments, being applied to highly complex patients, with rapidly changing clinical needs. To promote precision medicine in the field of renal replacement therapy and encourage dynamic prescription, the Acute Dialysis Quality Initiative (ADQI) recommends periodically measuring the solutes extracorporeal clearance with the aim of assessing the current treatment delivery and the gap from the therapeutic prescription (often intended as effluent dose). To perform this procedure, it is therefore necessary to obtain blood and effluent samples from the extracorporeal circuit to measure the concentrations of a target solute (usually represented by urea) prefilter, post-filter and in the effluent line. However, samples must be collected simultaneously from the extracorporeal circuit ports, with the same suction flow at unknown rate.
Methods:
The proposed study takes the first steps toward identifying the technical factors that should be considered in determining the optimal suction rate to collect samples from the extracorporeal circuit to measure the extracorporeal clearance for a specific solute. 
Results:
The results obtained identify the low suction rate (i.e., 1 ml/min) as an ideal parameter for an adequate sampling method. Low velocities do not perturb the external circulation system and ensure stable prevailing pressures in the circuit. Higher velocities can be allowed only with blood flows above 120 ml/min preferably in conditions of appropriate filtration fraction.
Discussion/Conclusions:
The specific value of aspiration flow rate must be proportioned to the prescription of CRRT treatments set by the clinician.
DOI: 10.6084/m9.figshare.24612291.v1
title: Supplementary Material for: Sampling from extracorporeal circuit: a step forward for dose monitoring in CRRT

description: Introduction: 
Continuous renal replacement therapies (CRRT) require constant monitoring and periodic treatment readjustments, being applied to highly complex patients, with rapidly changing clinical needs. To promote precision medicine in the field of renal replacement therapy and encourage dynamic prescription, the Acute Dialysis Quality Initiative (ADQI) recommends periodically measuring the solutes extracorporeal clearance with the aim of assessing the current treatment delivery and the gap from the therapeutic prescription (often intended as effluent dose). To perform this procedure, it is therefore necessary to obtain blood and effluent samples from the extracorporeal circuit to measure the concentrations of a target solute (usually represented by urea) prefilter, post-filter and in the effluent line. However, samples must be collected simultaneously from the extracorporeal circuit ports, with the same suction flow at unknown rate.
Methods:
The proposed study takes the first steps toward identifying the technical factors that should be considered in determining the optimal suction rate to collect samples from the extracorporeal circuit to measure the extracorporeal clearance for a specific solute. 
Results:
The results obtained identify the low suction rate (i.e., 1 ml/min) as an ideal parameter for an adequate sampling method. Low velocities do not perturb the external circulation system and ensure stable prevailing pressures in the circuit. Higher velocities can be allowed only with blood flows above 120 ml/min preferably in conditions of appropriate filtration fraction.
Discussion/Conclusions:
The specific value of aspiration flow rate must be proportioned to the prescription of CRRT treatments set by the clinician.
DOI: 10.17608/k6.auckland.24862932
title: Mesoscope files

description: Raw, movement corrected, DF, ROIs and extracted ROI activity traces
DOI: 10.17608/k6.auckland.24862932.v1
title: Mesoscope files

description: Raw, movement corrected, DF, ROIs and extracted ROI activity traces
DOI: 10.5281/zenodo.10404439
title: Initial experiments with Uroprint tensile tester V1- Nanoidentation 2a

description: Nanoindentation data on the Pavone for one of the soft PDMS samples. Area is estimated from the included images with reference on the metal grips with a width of 4.4 mm and thickness of 0.3 mm.
DOI: 10.5281/zenodo.10404440
title: Initial experiments with Uroprint tensile tester V1- Nanoidentation 2a

description: Nanoindentation data on the Pavone for one of the soft PDMS samples. Area is estimated from the included images with reference on the metal grips with a width of 4.4 mm and thickness of 0.3 mm.
DOI: 10.5281/zenodo.10404450
title: Initial experiments with Uroprint tensile tester V1- Nanoidentation 2b

description: Nanoindentation data on the Pavone for one of the soft PDMS samples. Area is estimated from the included images with reference on the metal grips with a width of 4.4 mm and thickness of 0.3 mm.
DOI: 10.5281/zenodo.10404451
title: Initial experiments with Uroprint tensile tester V1- Nanoidentation 2b

description: Nanoindentation data on the Pavone for one of the soft PDMS samples. Area is estimated from the included images with reference on the metal grips with a width of 4.4 mm and thickness of 0.3 mm.
DOI: 10.5281/zenodo.10404460
title: Initial experiments with Uroprint tensile tester V1- Nanoidentation 2c

description: Nanoindentation data on the Pavone for one of the soft PDMS samples. Area is estimated from the included images with reference on the metal grips with a width of 4.4 mm and thickness of 0.3 mm.
DOI: 10.5281/zenodo.10404461
title: Initial experiments with Uroprint tensile tester V1- Nanoidentation 2c

description: Nanoindentation data on the Pavone for one of the soft PDMS samples. Area is estimated from the included images with reference on the metal grips with a width of 4.4 mm and thickness of 0.3 mm.
DOI: 10.6073/pasta/5e0eb4ee4ae58cb5903d50417c6ff736
title: Fiddler crab impacts from observational study 2020-21: Aboveground & diatom biomass, plant height, percent N, burrow & mussel density, belowground biomass, and organic matter

description: The fiddler crab, Minuca pugnax, expanded its range into the Gulf of Maine recently and was first observed in the Plum Island Estuary in 2014. In 2020 and 2021, we investigated the impact of this burrowing crab on benthic microalgal biomass, sediment properties and the above- and belowground biomass of the cordgrass, Spartina alterniflora. To accomplish this, we conducted a control-impact study in plots with and without fiddler crabs in three marshes in the PIE-LTER: Sawyer, Clubhead, and Metcalf. In its historical range (i.e., south of Cape Cod), M. pugnax, enhances Spartina aboveground biomass. In contrast, we found that, on average, when fiddler crabs were present, aboveground biomass was 40% lower in the PIE-LTER. We also found that belowground biomass was 30% lower and benthic microalgal biomass was 45% lower when fiddler crabs were present, which is in line with our expectations. Because fiddler crabs reduced the biomass of foundational primary producers in its expanded range, our results imply that M. pugnax can influence other saltmarsh functions such as carbon storage and accretion as they expand north. More broadly, our results suggest that as species expand or shift their range with climate change, not only can they have profound impacts in their new ranges, but that those impacts can be the inverse of what is seen in their historical ranges.
DOI: 10.6073/pasta/d4d86a3f4e2da0f72158a3f90708d8e4
title: Fiddler crab density in Plum Island Sound estuary, Rowley, Massachusetts

description: Climate change is predicted to shift or extend the range of warm-water species poleward. In 2014, the fiddler crab, Minuca (Uca) pugnax, was observed for the first time in PIE, which is north of its historical range. Beginning in 2014, density estimates were collected.
DOI: 10.13026/jwtp-v091
title: MIMIC-IV Clinical Database Demo

description: The Medical Information Mart for Intensive Care (MIMIC)-IV database is
comprised of deidentified electronic health records for patients admitted to
the Beth Israel Deaconess Medical Center. Access to MIMIC-IV is limited to
credentialed users. Here, we have provided an openly-available demo of MIMIC-
IV containing a subset of 100 patients. The dataset includes similar content
to MIMIC-IV, but excludes free-text clinical notes. The demo may be useful for
running workshops and for assessing whether the MIMIC-IV is appropriate for a
study before making an access request.
DOI: 10.17882/94769
title: EMSO-Iberian Margin Cape St. Vincent observatory data (subsurface mooring) from Jun-Oct 2022.

description: The EMSO – Iberian Margin Cape St. Vincent mooring (IbMa-CSV) is a submarine observatory, located at the edge of the continental slope, 10 nm south of Cape St. Vincente, the SW tip of the Iberian Peninsula (36.848478 N , -8.927072 E). The observatory is comprised of three instruments. EMSO Generic Instrument Module (EGIM) (200 m) hosts a CT, acoustic-doppler current profiler, dissolved oxygen sensor, water pressure sensor and an optical backscatter sensors. Wave-powered vertical profiler Wirewalker operates from near surface - 150 m depth. It hosts a CTD, dissolved oxygen sensor, fluorometer and optical backscatter sensors.Teledyne RDI Sentinel V100 300 kHz Acoustic Doppler Current Profiler (ADCP) (200 m). This datasets contains observatory data, collected during the EMSO-PT Leg 2 Campaign, in collaboration with the R/V Mário Ruivo and Instituto Português do Mar e da Atmosfera from June - October 2022.
DOI: 10.17882/95468
title: EMSO-Iberian Margin Cape St. Vincent observatory data (EMSO Generic Instrument Module (EGIM)) from Jun-Oct 2022.

description: The EMSO – Iberian Margin Cape St. Vincent mooring (IbMa-CSV) is a submarine observatory, located at the edge of the continental slope, 10 nm south of Cape St. Vincente, the SW tip of the Iberian Peninsula (36.848478 N , -8.927072 E). The observatory is comprised of three instruments. EMSO Generic Instrument Module (EGIM) (200 m) hosts a CT, acoustic-doppler current profiler, dissolved oxygen sensor, water pressure sensor and an optical backscatter sensors. Wave-powered vertical profiler Wirewalker operates from near surface - 150 m depth. It hosts a CTD, dissolved oxygen sensor, fluorometer and optical backscatter sensors.Teledyne RDI Sentinel V100 300 kHz Acoustic Doppler Current Profiler (ADCP) (200 m). This datasets contains the EMSO Generic Instrument Module (EGIM) observatory data, collected during the EMSO-PT Leg 2 Campaign on the R/V Mário Ruivo from June - October 2022.
DOI: 10.5281/zenodo.7575107
title: Datasets and supplemental information accompanying scANANSE

description: This repository contains supplementary files from the paper: "<strong>scANANSE: gene regulatory network and motif analysis of single-cell clusters"</strong> as well as several accompanying datasets. The supplementary files: - Install_Rstudio.pdf - AnanseScanpy_equivalent.pdf The pre-processed Seurat object and the two pre-processed Scanpy objects can be used to run the scANANSE pipeline with: - preprocessed_PBMC.Rds - rna_PBMC.h5ad - atac_PBMC.h5ad Additional raw data, used to construct the pre-processed objects, supplemented from: https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_filtered_feature_bc_matrix.h5, https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_atac_fragments.tsv.gz, https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_atac_fragments.tsv.gz.tbi,<br> https://atlas.fredhutch.org/data/nygc/multimodal/pbmc_multimodal.h5seura
DOI: 10.5281/zenodo.8403912
title: Southern California mule deer survey dataset

description: In March 2019, October 2019, and February 2020 the California Department of Fish and Wildlife conducted total count aerial surveys (Schlossberg et al., 2016) in the three study areas using a contracted four seat Bell 407 helicopter (Air Shasta Rotor & Wing, Redding, CA). These surveys were designed to cover the entire study area at three study sites in San Diego County: San Felipe Valley Wildlife Area and San Felipe Hills (SFVH), Kitchen Creek (KC), and Rancho Jamul Ecological Reserve and Hollenbeck Canyon Wildlife Area (RJHB). Surveyors flew parallel transects spaced approximately 300 m apart, with transects over mountainous terrain oriented along contour lines. All surveys occurred between 0700 and 1700 hours each day. To reduce the possibility of double counts of deer groups, where observers record the same marked deer more than once, each survey site was split into polygons that were each completed with one load of fuel if possible, with adjacent polygons completed consecutively, and each survey site covered in two days or less. During survey flights, observers simultaneously recorded data for the double observer (DO) and sightability methods.
DOI: 10.17632/5bhznxy8r4.1
title: Supplementary material 3_57 images_Accuracy & efficiency test

description: Fifty-seven images depicting different levels of Whitefly (A. socialis) nymph counts with a resolution of 12 MPX (4228 by 2848 pixels).
DOI: 10.3886/e154141v1
title: Data and Code for: ACE - Analytic Climate Economy

description: The code primarily generates the SCC for the Analytic Climate Economy (ACE) in the accompanying publication and permits the user to evaluate alternative scenarios and to explore the different calibration approaches discussed in the paper (as well as others). It also provides code underlying the Figures in the manuscript. ACE is an analytic integrated assessment model of climate change combining a general economic model with a standard carbon cycle or impulse response model for carbon flows, the usual radiative forcing equation of economic IAMs (greenhouse effect), and a novel ocean-atmosphere temperature system that permits an analytic solution. The code evaluates the formulas derived in the manuscript for ACE-DICE and ACE-Joos. <br>
DOI: 10.5281/zenodo.7808167
title: Spanish wild plants traditionally used as medicine

description: List of Spanish wild plant species with the ethnobotanical references in which they have been reported as medicinal and their cultural importance index (CI). Accompanied as well by data about origin (wild or cultivated), abundance, occupancy area, endemicity, conservation status, protection status. We also provide the complete list of references and legislation used. The excel file has five tabs: 1. Ethnobotanical references, 2. Medicinal species, 3. Legislation, 4. Protection, 5. Protection categories.
description: Funding acknowledgements: - Spanish Ministry of Agriculture, Fishery, Food and Environment (TEC0004583, TEC0003351) - Fundación Biodiversidad (CA2015) - Spanish Ministry of Agriculture, Fishery and Food (REF 41196, 202005000018)
description: {"references": ["Anthos, 2022. Information System of the plants of Spain. Real Jard\u00edn Bot\u00e1nico, CSIC www.anthos.es", "SIVIM, 2022. Sistema de informaci\u00f3n de la vegetaci\u00f3n ib\u00e9rica y macaron\u00e9sica www.sivim.info/sivi/"]}
DOI: 10.5281/zenodo.8006895
title: Rawdata EMS 24 hr mortality

description: Rawdata EMS 24 hr mortality
DOI: 10.5281/zenodo.8115932
title: Numerical data for research paper titled "Physical mechanism for a temporal decrease of the Gutenberg-Richter b-value prior to a large earthquake"

description: Numerical data used to make Figures in the manuscript entitled "Physical mechanism of the temporal decrease of a Gutenberg-Richter b-value prior to a large earthquake". We provide the data used to create Figures 2 to 13 from the main text, and Figures S2, S3 and S6 from the supplementary information. We also provide Python scripts to plot them.
DOI: 10.26066/rds.8909
title: Sub-basins of Hindu Kush Himalaya (HKH) Region

description: The dataset provides second level or sub-basin boundary of ten major river basins in the Hindu Kush Himalaya (HKH) region - the Amu Darya, Indus, Ganges, Brahmaputra ( Yarlungtsanpo), Irrawaddy, Salween (Nu), Mekong (Lancang), Yangtse (Jinsha), Yellow River (Huanghe), and Tarim (Dayan). In addition, it also includes boundaries of two interior basins. The dataset has been developed from NASA's 90m resolution Shuttle Radar Topography Mission (SRTM) digital elevation model.
DOI: 10.5281/zenodo.8371046
title: PhishTank URL's

description: 1. Phished URL extracted from the PhishTank.<br> 2. Python snippet/code for extraction is also shared.
DOI: 10.6084/m9.figshare.22584451
title: Data and code for "Downsized: Gray whales using an alternative foraging ground have smaller morphology"

description: <strong>Overview</strong> This project compares length-at-age growth, as well as skull and fluke size, between ENP and PCFG gray whales. <br> <strong>Code</strong> 1. <strong>growth_model_v4.R</strong> – to run growth model 2. <strong>model_outputs_v4.Rmd </strong>– uses outputs from growth_model_v4.R to create summary data frames and figures in manuscript. <br> <strong>Data description</strong> <br> <strong>enp_Agbayani_etal_2020.csv</strong> = dataset compiled and used by Agbayani et al., 2020 to analyze ENP length-at-age growth from data comprised of standings, whaling, and aerial photogrammetry between 1926 and 1997. Contact Selina Agbayani for further details: selina.agbayani@gmail.com. Agbayani S, Fortune SME, Trites AW. 2020. Growth and development of North Pacific gray whales (<em>Eschrichtius robustus</em>). J Mammal 101, 742–754. (doi:10.1093/jmammal/gyaa028). https://doi.org/10.1093/jmammal/gyaa028 <br> <strong>enp_length&age.csv</strong> = scientific whaling data on ENP gray whales collected by Rice and Wolman (1971). Contains total length (TL), sex, and age data for individuals. <br> <strong>enp_morphological_data.csv</strong> = scientific whaling data on ENP gray whales collected by Rice and Wolman (1971). Contains total length (TL), snout-blowhole (SnB), and fluke span (FS) measurements, as well as metadata such as sex, age, demographic info, and date of specimen collection. <br> <strong>pcfg_data_growth_model.csv</strong> = morphometric and age data for PCFG gray whales collected via drone-based photogrammetry and photo-ID history. Contains total length (TL), snout-blowhole (SnB), and fluke span (FS) measurements, as well as metadata such as sex and age, <br> Most columns are self explanatory. Below are descriptions of columns that are less obvious that may be in each or some of the .csv files. <br> whale_ID: ID of whale AID: whale_ID + date (YYYYMMDD) population: ENP or PCFG Age: age of whale in years AgeType: 0 = “known age”, 1 = ‘min age’ for PCFG. For ENP, earplugs are considered known age. TL.mean: mean of posterior distribution for TL for that individual TL.lower: lower bound of 95% highest posterior density interval (HPDI) TL.upper: upper bound of 95% HPDI TL.cv: coefficient of variation (%) of posterior distribution for TL for that individual TL.var: variance of posterior distribution for TL for that individual TL.sd: standard deviation of posterior distribution for TL for that individual SnB.std: snout-blowhole measurement standardized by TL. Same suffixes apply (i.e, SnB.std.mean = the mean of the posterior distribution for SnB for that individual) Fs.std: fluke span measurement standardized by TL. Same suffixes apply (i.e, Fs.std.mean = the mean of the posterior distribution for Fs for that individual) suffix “.HPDwidth”: the width of the HPDI (.upper - .lower)
DOI: 10.17632/5dym63wn6z.1
title: Software Quality Grades for Lattice Boltzmann Solvers

description: The data captures the state of the practice for Lattice Boltzmann Solvers as of mid-2020 (except for Musubi, which was measured in January 2022).  The measurement template consists of 108 questions to assess 9 qualities (installability, correctness and verifiability, reliability, robustness, usability, maintainability, reusability, surface understandability, visibility/transparency).  The details of the methodology are available in an arXiv report (https://arxiv.org/ abs/2110.11575).
DOI: 10.17026/dans-25n-2xjv
title: Netherlands Longitudinal Lifecourse Study - NELLS Panel Wave 1 2009 and Wave 2 2013 - versie 1.2

description: Wave 1 and 2 of a panel study on an initial sample of 5312 inhabitants of the Netherlands, age group 15-45, with oversamples of the Moroccan and Turkish minorities. Data for Wave 1 have been collected in a mixed mode of face-to-face interviews and self-completion questionnaires. Data for Wave 2 have been collected in a mixed mode of face-to-face interviews and websurvey questionnaires.The variables include family background indicators, socio-demographic and socio-economic background variables, social inequality, social cohesion and integration, a large set of values, norms and attitudes, and leisure time items.
DOI: 10.24400/527896/a01-2022.005
title: Mesoscale Eddy Trajectory Atlas META3.2 Delayed-Time all satellites
title: version META3.2 DT allsat

description: This dataset is composed of the trajectories and all associated parameters for the eddies detected with the py-eddy-tracker algorithm (Mason et al., 2014. DOI:10.1175/JTECH-D-14-00019.1) freely released under a GPL V3 license (https://github.com/AntSimi/py-eddy-tracker). The detection is made on maps of Absolute Dynamic Topography (ADT) computed with the maximum altimeter satellites available, the maps are distributed by the Copernicus Marine Service (https://marine.copernicus.eu, cf user manual for details). The maps are high-pass filtered with a half-power cutoff wavelenght of 700 km. The amplitude must be over 0.4 cm , the minimum number of grid points within a contour is 5 and the shape error must be below 70% on the raw effective contour. Note that the contour storage resampling may slightly change the provided error. The tracking is made through the overlap of the eddies. In case of multiple candidates, the eddy with the higher ratio overlap area over union area is associated to the trajectory. Trajectories are considered reliable when they last at least 10 days.
DOI: 10.5281/zenodo.8136528
title: Diahaline Warner estuary (GETM model results)

description: This dataset was used for the manuscript "A rigorous derivation of the Water Mass Transformation framework, the relation between mixing and dia-surface exchange flow, and links to recent theories in estuarine research" by Klingbeil and Henell (2023, Journal of Physical Oceanography, 10.1175/JPO-D-23-0130.1).

The data are obtained from a simulation with the coastal ocean model GETM, averaged over the 54 tidal cycles from day 84 to day 112.
DOI: 10.5445/ir/1000140052
title: Thermophysical properties of the near eutectic liquid Ga-In-Sn alloy

description: Flüssigmetalle können als effiziente Wärmeträgerfluide für Anwendungen mit hohen Wärmelasten and mittleren bis hohen Temperaturen eingesetzt werden. Aufgrund ihres niedrigen Schmelzpunktes sind einige Gallium-basierte Legierungen flüssig bei Raumtemperatur und bieten daher vielfältige Einsatzmöglichkeiten in technischen Anwendungen. Für derartige Anwendungen ist die Kenntnis der thermophysikalischen Eigenschaften unerlässlich. In dieser Veröffentlichung werden die spezifischen thermophysikalischen Eigenschaften der nah-eutektischen flüssigen Ga-In-Sn Legierung vorgestellt. Die temperaturabhängige Dichte, die spezifische Wärmekapazität bei konstantem Druck, sowie die Wärmeleitfähigkeit werden experimentell bestimmt.