cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.nq244m
title: Occurrence Download

description: A dataset containing 163606 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Leontodon hispidus L., Leontodon hispidus L., Leontodon hispidus L., Leontodon hispidus L.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 163606 records from 581 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0244078-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13831016
title: Self-organization of conducting pathways explains complex wave trajectories in procedurally interpolated fibrotic cardiac tissue: a digital-twin study

description: In precision cardiology, digital twinning technology (DT) holds promise for predicting arrhythmias by leveraging patient data and biophysics knowledge. However, current DTs are designed to directly reproduce biopotential conduction in cardiac tissue, while only indirect non-invasive methods can be clinically implemented on real organs. This discrepancy challenges our understanding of DT applicability limits. This study aims to enhance DT by developing an in-vitro training complement. We conducted a frame-by-frame comparison of in-vitro optical mapping of biopotential conduction with machine learning (ML) optimized DT predictions. Patient-specific self-organized tissue samples of human induced pluripotent stem cells-derived cardiomyocytes (CMs) with diffuse fibrosis served as DT prototypes. High spatiotemporal resolution optical mapping recordings (Δx=117 ± 4 μm, Δt=7.69 ms) and immunostainings were used to reproduce fibrotic samples with a linear size of 7.5 mm. Using data-driven ML-optimization of the Cellular Potts model, we examined wave propagation at the subcellular level. The modified Glazier-Graner-Hogeweg model accurately reflected the “perinatal window” until the 20th day of differentiation, affecting CMs self-organization. The percolation threshold of virtual conductive pathways reached 26% (26.7 ± 2.9% of CMs in-vitro), resulting in a spatial correlation of amplitude maps between prototype samples and their DT with Pearson’s coefficients of 0.83 ± 0.02. As a proof-of-concept, we demonstrated the ability of ML-optimized DT to predict and interpolate wavefront trajectories in optical mapping recordings. We found that mathematical approximation of fibrosis distribution played a key role in DT prediction accuracy, potentially informing the implementation of LGE-MRI detection of fibrosis within cardiac DT frameworks.Dataset A: Immunostaining images were sorted based on the day of enzymatic disaggregation (before and after day 20). We collected and sorted α-actinin, Connexin43 and DAPI immunostainings for Cellular Potts Model optimization. During data processing, cell shapes (n=109 and n=69 for CM and BPs respectively after day 20, n=209 and n=90 for CM and BPs respectively before day 20) were formalized.Dataset C corresponds to FluoVolt recordings (3 samples). Dataset B corresponds to Fluo-4 AM recordings in iPSC-CMs samples with diffuse fibrosis imitation (4 samples).
DOI: 10.5281/zenodo.13831017
title: Self-organization of conducting pathways explains complex wave trajectories in procedurally interpolated fibrotic cardiac tissue: a digital-twin study

description: In precision cardiology, digital twinning technology (DT) holds promise for predicting arrhythmias by leveraging patient data and biophysics knowledge. However, current DTs are designed to directly reproduce biopotential conduction in cardiac tissue, while only indirect non-invasive methods can be clinically implemented on real organs. This discrepancy challenges our understanding of DT applicability limits. This study aims to enhance DT by developing an in-vitro training complement. We conducted a frame-by-frame comparison of in-vitro optical mapping of biopotential conduction with machine learning (ML) optimized DT predictions. Patient-specific self-organized tissue samples of human induced pluripotent stem cells-derived cardiomyocytes (CMs) with diffuse fibrosis served as DT prototypes. High spatiotemporal resolution optical mapping recordings (Δx=117 ± 4 μm, Δt=7.69 ms) and immunostainings were used to reproduce fibrotic samples with a linear size of 7.5 mm. Using data-driven ML-optimization of the Cellular Potts model, we examined wave propagation at the subcellular level. The modified Glazier-Graner-Hogeweg model accurately reflected the “perinatal window” until the 20th day of differentiation, affecting CMs self-organization. The percolation threshold of virtual conductive pathways reached 26% (26.7 ± 2.9% of CMs in-vitro), resulting in a spatial correlation of amplitude maps between prototype samples and their DT with Pearson’s coefficients of 0.83 ± 0.02. As a proof-of-concept, we demonstrated the ability of ML-optimized DT to predict and interpolate wavefront trajectories in optical mapping recordings. We found that mathematical approximation of fibrosis distribution played a key role in DT prediction accuracy, potentially informing the implementation of LGE-MRI detection of fibrosis within cardiac DT frameworks.Dataset A: Immunostaining images were sorted based on the day of enzymatic disaggregation (before and after day 20). We collected and sorted α-actinin, Connexin43 and DAPI immunostainings for Cellular Potts Model optimization. During data processing, cell shapes (n=109 and n=69 for CM and BPs respectively after day 20, n=209 and n=90 for CM and BPs respectively before day 20) were formalized.Dataset C corresponds to FluoVolt recordings (3 samples). Dataset B corresponds to Fluo-4 AM recordings in iPSC-CMs samples with diffuse fibrosis imitation (4 samples).
DOI: 10.5281/zenodo.13830901
title: TN412 SCOPE-Gradients-5 CTD data

description: The SCOPE-Gradients program was designed to test conceptual and mathematical models of biogeochemical organization across the transition zone between different ecosystems. The studies were grounded by three hypotheses derived from ecological theory and manifested by the Darwin ecosystem model output.  1) Optimal supply ratios of fixed nitrogen and iron result in enhanced productivity across the transition zone.  2) The size distribution of organisms (PSD) across the transition zone are predictable under steady state conditions.  3) Trends in elemental and macro-molecular composition of primary producers will vary predictably across the transition zone. We employed a suite of interdisciplinary sampling strategies on process cruises transecting across the North Pacific subtropical gyre, the transition zone and into the subpolar gyres in order to determine whether the theory underlying our models and driving hypotheses are sufficiently robust to predict in situ observations.
DOI: 10.5281/zenodo.13830902
title: TN412 SCOPE-Gradients-5 CTD data

description: The SCOPE-Gradients program was designed to test conceptual and mathematical models of biogeochemical organization across the transition zone between different ecosystems. The studies were grounded by three hypotheses derived from ecological theory and manifested by the Darwin ecosystem model output.  1) Optimal supply ratios of fixed nitrogen and iron result in enhanced productivity across the transition zone.  2) The size distribution of organisms (PSD) across the transition zone are predictable under steady state conditions.  3) Trends in elemental and macro-molecular composition of primary producers will vary predictably across the transition zone. We employed a suite of interdisciplinary sampling strategies on process cruises transecting across the North Pacific subtropical gyre, the transition zone and into the subpolar gyres in order to determine whether the theory underlying our models and driving hypotheses are sufficiently robust to predict in situ observations.
DOI: 10.15468/dl.ujztyw
title: Occurrence Download

description: A dataset containing 2270845 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2270845 records from 1231 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027433-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pdgjky
title: Occurrence Download

description: A dataset containing 8183 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "StateProvince is one of (cundinamarca)",
 "TaxonKey is one of (Fulica americana Gmelin, 1789)"
 ]
 }
 ]
}

 The dataset includes 8183 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027438-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.58150/iccs_2022_data_edition_1
title: ICCS 2022 International Database: International Civic and Citizenship Education Study - edition 1

description: ICCS investigates how young people are prepared to undertake their roles as citizens. ICCS 2022 is the third cycle of the study (following ICCS 2016 and ICCS 2009). For each cycle, ICCS develops new measures to address the recent challenges in civic and citizenship education (CCE) from societal contexts. ICCS 2022 aims to extend its regional and thematic scope by considering issues such as the increase in populist movements, authoritarian government practices, or issues related to climate change and environmental protection.
The Australian Council for Educational Research (ACER) serves as the international study center for ICCS 2022, with the Laboratorio di Pedagogia Sperimentale (LPS)at Roma Tre University and LUMSA University in Rome acting as associate research centers, working in close cooperation with IEA, and the national centers of participating countries.
Students enrolled in the eighth grade, provided that the average age of students in this grade was 13.5 years or above at the time of the assessment; in countries where the average age of students in Grade 8 was less than 13.5 years, Grade 9 was defined as the target population. Teachers teaching regular classes at the target grade level
description: ICCS
description: Self-administered questionnaire
description: Educational Tests and Questionnaires
DOI: 10.5281/zenodo.13831025
title: Clinical Dataset for Risk Factors for Overall Survival in Hospitalized Adults Receiving Total Parenteral Nutrition: A Retrospective Cohort Study at a Social Security Hospital in Peru: January 2022 – June 2023

description: This Excel dataset contains de-identified clinical data collected over a two-year period, aimed at evaluating risk factors associated with 90-day mortality in hospitalized patients receiving total parenteral nutrition (TPN). The dataset includes variables such as age, sex, clinical diagnosis, comorbidities, days in the ICU, days receiving TPN, laboratory values (lymphocytes, platelets, TGP), and the presence of acute kidney injury (AKI) or chronic kidney disease (CKD).

The data is structured in rows, with each row representing an individual patient, and columns corresponding to the various clinical and laboratory parameters. It was used to perform survival analysis using Cox proportional hazards models and other statistical techniques. Sensitive information has been removed to ensure patient confidentiality.

Access to the dataset is restricted, and permission must be requested for its use in further research.

File format: Excel (.xlsx)Keywords: Total Parenteral Nutrition, 90-Day Mortality, Risk Factors, Clinical Dataset, Cox Regression
DOI: 10.5281/zenodo.13831026
title: Clinical Dataset for Risk Factors for Overall Survival in Hospitalized Adults Receiving Total Parenteral Nutrition: A Retrospective Cohort Study at a Social Security Hospital in Peru: January 2022 – June 2023

description: This Excel dataset contains de-identified clinical data collected over a two-year period, aimed at evaluating risk factors associated with 90-day mortality in hospitalized patients receiving total parenteral nutrition (TPN). The dataset includes variables such as age, sex, clinical diagnosis, comorbidities, days in the ICU, days receiving TPN, laboratory values (lymphocytes, platelets, TGP), and the presence of acute kidney injury (AKI) or chronic kidney disease (CKD).

The data is structured in rows, with each row representing an individual patient, and columns corresponding to the various clinical and laboratory parameters. It was used to perform survival analysis using Cox proportional hazards models and other statistical techniques. Sensitive information has been removed to ensure patient confidentiality.

Access to the dataset is restricted, and permission must be requested for its use in further research.

File format: Excel (.xlsx)Keywords: Total Parenteral Nutrition, 90-Day Mortality, Risk Factors, Clinical Dataset, Cox Regression
DOI: 10.15468/dl.6675zh
title: Occurrence Download

description: A dataset containing 3714 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-105.93943 22.78367,-105.95616 22.79545,-105.96077 22.78791,-105.91919 22.75376,-105.87628 22.71321,-105.87426 22.71495,-105.87116 22.71833,-105.89975 22.74522,-105.88393 22.75723,-105.88155 22.75508,-105.87564 22.7596,-105.861 22.7457,-105.86076 22.74806,-105.86238 22.74837,-105.85994 22.7513,-105.88106 22.76936,-105.88273 22.76935,-105.88203 22.76766,-105.87591 22.76167,-105.88777 22.76889,-105.90154 22.78255,-105.91735 22.79286,-105.92337 22.79334,-105.92249 22.79159,-105.91889 22.79092,-105.91775 22.78847,-105.91099 22.78789,-105.90778 22.78459,-105.91973 22.78827,-105.92083 22.7859,-105.91843 22.78212,-105.91047 22.77777,-105.91397 22.77699,-105.92605 22.78428,-105.92798 22.78137,-105.92209 22.77907,-105.92626 22.77839,-105.93387 22.78285,-105.93943 22.78367))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3714 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027439-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ddwwv
title: Occurrence Download

description: A dataset containing 265 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cheirogaleus medius É.Geoffroy Saint-Hilaire, 1812"
 ]
}

 The dataset includes 265 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027440-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mhcwpq
title: Occurrence Download

description: A dataset containing 197920 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "TaxonKey is one of (Aponogeton distachyos L.f., Arthurdendyus triangulatus (Dendy, 1895), Cabomba caroliniana A.Gray, Callosciurus finlaysonii (Horsfield, 1823), Cherax destructor Clark, 1936, Corvus splendens Vieillot, 1817, Crassula helmsii (Kirk) Cockayne, Elodea densa (Planch.) Casp., Eriocheir sinensis H.Milne Edwards, 1853, Erythranthe guttata (DC.) G.L.Nesom, Faxonius immunis (Hagen, 1870), Faxonius juvenilis (Hagen, 1870), Faxonius rusticus (Girard, 1852), Faxonius virilis (Hagen, 1870), Gambusia affinis (Baird & Girard, 1853), Heracleum mantegazzianum Sommier & Levier, Heracleum persicum Desf. ex Fisch., C.A.Mey. & Avé-Lall., Heracleum pubescens (Hoffm.) M.Bieb., Houttuynia cordata Thunb., Hydrocotyle ranunculoides L.f., Impatiens glandulifera Royle, Koenigia polystachya (Wall. ex Meisn.) T.M.Schust. & Reveal, Lagarosiphon major (Ridl.) Moss, Lepomis gibbosus (Linnaeus, 1758), Limnoperna fortunei (Dunker, 1857), Ludwigia grandiflora (Michx.) Greuter & Burdet, Ludwigia peploides (Kunth) P.H.Raven, Lysichiton americanus Hultén & H.St.John, Morone americana (Gmelin, 1789), Muntiacus reevesi (Ogilby, 1839), Myriophyllum aquaticum (Vell.) Verdc., Myriophyllum heterophyllum Michx., Pacifastacus leniusculus (Dana, 1852), Petasites japonicus (Siebold & Zucc.) Maxim., Pontederia cordata L., Procambarus acutus (Girard, 1852), Procambarus clarkii (Girard, 1852), Procambarus virginalis Lyko, 2017, Pseudorasbora parva (Temminck & Schlegel, 1846), Pycnonotus cafer (Linnaeus, 1766), Saururus cernuus L., Sciurus carolinensis Gmelin, 1788, Sciurus niger Linnaeus, 1758, Solenopsis invicta Buren, 1972, Solenopsis richteri Forel, 1909, Threskiornis aethiopicus (Latham, 1790), Vespa velutina Lepeletier, 1836, Zizania latifolia (Griseb.) Hance ex F.Muell.)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 197920 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027429-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c58k75792
title: MassIVE MSV000095935 - Ion Mobility-Assisted Free Radical Initiated Peptide Sequencing
title: Free radical-initiated peptide sequencing (FRIPS), a TEMPO-assisted mass spectrometry, has shown potential as a peptide tandem mass spectrometry (MS/MS) tool that can be an alternative to electron-based mass spectrometry and the traditional collision-based methods. However, a couple of instrumentation barriers need to be overcome before this approach can be a practical tool. One of the barriers is the limitation of the FRIPS-based technique to ion trap mass spectrometry or an orbitrap due to the MS3 workflow. To overcome this challenge, the work introduces a recently developed activation within the trapped ion mobility mass spectrometry (TIMS) device that was found to initiate the radical species. More importantly, the generated product ion was mobility separated, which increased the sequence coverage. Overall, coupling the activation within the TIMS cell with the para-TEMPO-Bz-based FRIPS mass spectrometry offers another practical approach that can be utilized for peptide MS/MS analysis
DOI: 10.15468/dl.jyccpe
title: Occurrence Download

description: A dataset containing 1058694 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Belgium, Germany, Netherlands)",
 "TaxonKey is one of (Ondatra zibethicus (Linnaeus, 1766), Myocastor coypus (Molina, 1782))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1058694 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027428-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ra6wat
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is one of (Santand., Santandar, Santander, Santander (?), Santander Department, Santander Dept, Santander Dept., Santander Dpt., Boyaca, BOYAC??, Boyaca Department, Boyaca Dept, Boyaca Dept., Boyaca department, Boyaca y Santander, Boyaca y santander)",
 "TaxonKey is Adelomyia melanogenys (Fraser, 1840)"
 ]
}

 The dataset includes 51 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027441-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xje224
title: Occurrence Download

description: A dataset containing 2705 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-195.30896 6.05887,-25.69104 6.05887,-25.69104 73.94113,-195.30896 73.94113,-195.30896 6.05887))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Canis lupus baileyi Nelson & Goldman, 1929"
 ]
}

 The dataset includes 2705 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027442-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/ca11479098109a39c675fdd812fc83d7
title: Plant & lichen species composition data for Saddle Nodal Plots, 1971 - ongoing.

description: To study long-term changes in alpine tundra plant communities, thirty permanently marked plots were surveyed in 1971. These same plots were surveyed at twenty, thirty, forty and fifty year intervals from the initial sampling date; in 1991, 2001, 2011, and 2021. Due to covid and other events, data for the 50-year time point was collected over three summers, from 2021-2023. Plots are one by ten meters, divided into ten subplot quadrats, and marked with rebar. The presence or absence of each vascular plant species was recorded per plot. The cover was recorded for each species that appeared in a one meter by ten centimeter strip at the base of each quadrat within each plot. The cover of non-vascular plants, soil, rocks, and lichens was also recorded within the strip in most sampling years. Lichen were also surveyed in 1971 and 2021.These data have been used to study the changes in vascular plant and lichen communities and cover across habitats following a moisture gradient on the saddle portion of Niwot Ridge; these habitats include dry fellfield, dry meadow, moist meadow, wet meadow, snow bank, and shrub tundra. While we have observed some changes in species richness and cover in the plots, overall the plant communities seem fairly stable over time. Lichen species richness has increased in some habitats, while some lichen species have been disappearing from others.