cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.905047
title: Pooled biochemical and mRNA markers of the blue mussels Mytilus edulis

description: Biofouling causes massive economical losses in the maritime sector creating an urgent need for effective and ecologically non-harmful antifouling materials. Zinc oxide (ZnO) nanorod coatings show promise as an antifouling material; however, the toxicity of ZnO nanorods to marine organisms is not known. We compared the toxicity of suspended ZnO nanorods (NR) with that of ZnO nanoparticles (NP) and ionic Zn2+ in a marine bivalve Mytilus edulis exposed for two weeks to 10 or 100 µg Zn L-1 of ZnO NPs, NRs or Zn2+, or to immobilized NRs. The multi-biomarker assessment included bioenergetics markers (tissue energy reserves, activity of mitochondrial electron transport system and autophagic enzymes), expression of apoptotic and inflammatory genes, and general stress biomarkers (oxidative lesions, lysosomal membrane stability and metallothionein expression). Exposure to ZnO NPs, NRs and Zn2+ caused accumulation of oxidative lesions in proteins and lipids, stimulated autophagy, and led to lysosomal membrane destabilization indicating toxicity. However, these responses were not specific for the form of Zn (NPs, NR or Zn2+) and showed no monotonous increase with increasing Zn concentrations in the experimental exposures. No strong disturbance of the energy status was found in the mussels exposed to ZnO NPs, NRs, or Zn2+. Exposure to ZnO NPs and NRs led to a strong induction of apoptosis- and inflammation-related genes, which was not seen in Zn2+ exposures. Based on the integrated biomarker response, the overall toxicity as well as the pro-apoptotic and pro-inflammatory action was stronger in ZnO NPs compared with the NRs. Given the stability of ZnO NR coatings and the relatively low toxicity of suspended ZnO NR, ZnO NR coating might be considered a promising low-toxicity material for antifouling paints.
description: Supplement to: Falfushynska, Halina; Wu, Fangli; Ye, Fei; Kasianchuk, Nadiia; Dutta, Joydeep; Dobretsov, Sergey; Sokolova, Inna M (2019): The effects of ZnO nanostructures of different morphology on bioenergetics and stress response biomarkers of the blue mussels Mytilus edulis. Science of the Total Environment, 694, 133717
DOI: 10.1594/pangaea.903323
title: Microphysics and chemical composition of particulate dry deposition measured in Tinfou, Morocco

description: Samples were collected with a Sigma-2 sampler (Waza et al., 2019) during the SAMUM-2 campaign (Heintzenberg, 2009; Kandler et al., 2009) 2 m above ground between 12 may 2006 and 06 June 2006. The geographical coordinates are N 30.2378° and W 5.6079°, height is approximately 680 m above sea level.Samples were subject to automated scanning electron microscopy with coupled X-ray analysis (Kandler et al., 2018). This data set contains the results of a sample re-analysis with more modern instrumentation in 2017.Note that not all daily samples could be analyzed, as some were totally overloaded during dust wind situations. This corresponds to the missing numbers and gaps in the time line.Each data file is one sample (approximately diurnal collection), an overview with meta data is given in the sample list file. Please refer to the description files for more details.
DOI: 10.1594/pangaea.793041
title: (Appendix E) Major element composition of olivine from ODP Leg 135 holes
DOI: 10.1594/pangaea.903325
title: Microphysics and chemical composition of particulate dry deposition measured in Praia, Santiago, Cape Verde

description: Samples were collected with a Sigma-2 sampler (Waza et al., 2019) on top of SAMUM-2 container installation 13 January 2008 and 10 February 2008 (Ansmann et al., 2011; Kandler et al., 2011). The geographical coordinates are N 14.9475° and W 23.4845°, height is approximately 100 m above sea level.Samples were subject to automated scanning electron microscopy with coupled X-ray analysis (Kandler et al., 2018). Each data file is one sample, an overview with meta data is given in the sample list file.Please refer to the description files for more details.
DOI: 10.1594/pangaea.903326
title: Microphysics and chemical composition of particulate dry deposition measured at Dushanbe, Tajikistan

description: Samples were collected with a slat plate type sampler (Waza et al., 2019) in the suburbs of Dushanbe, Tajikistan, between 28 August 2016 and 07 September 2016. The geographical coordinates are N 38.5594°, E 68.8561°, height is approximately 870 m above sea level.Samples were subject to automated scanning electron microscopy with coupled X-ray analysis (Kandler et al., 2018).Each data file is one sample (approximately diurnal collection), an overview with meta data is given in the sample list file. Please refer to the description files for more details.
DOI: 10.1594/pangaea.904942
title: Faunal dataset: reconstructing climatic niche breadth of land use for animal production during the African Holocene

description: This dataset is associated with Phelps et al. (2019) and is comprised of archaeological information from Holocene faunal assemblages in Africa, including assemblage, radiocarbon and taxonomic information. This dataset was modified from Jousse 2017 and associated datasets compiled by H. Jousse.
description: Supplement to: Phelps, Leanne N; Broennimann, Olivier; Manning, Katie; Timpson, Adrian; Jousse, Hélène; Mariethoz, Gregoire; Fordham, Damien A; Shanahan, Timothy M; Davis, Basil A S; Guisan, Antoine (2020): Reconstructing the climatic niche breadth of land use for animal production during the African Holocene. Global Ecology and Biogeography, 29(1), 127-147
DOI: 10.1594/pangaea.860862
title: Physical oceanography from Seaglider mission CNCY200915006, links to files in NetCDF format
DOI: 10.1594/pangaea.870716
title: Observation of manganese deposition on the bottom sediments of the Tongue of the Ocean trench

description: Deep-sea echinoderms of the Tongue of the Ocean, Bahama Islands, have been studied, using trawled collections made by the University of Miami together with observations from the deep submersible Alvin. Transect runs in the submersible permitted studies of population densities and behaviour of approximately 38 species of larger invertebrates, of which 27 were echinoderms. Several echinoderm species show a patchy distribution pattern which is apparently not related to available food resources. Some species are exclusively herbivores, feeding on fragments of turtle grass, Thalassia testudinata and sargassum weed, Sargassum spp. Feeding habits of some Tongue of the Ocean echinoderms are compared with those of the same species from further north, where supplies of plant material are not nearly so abundant.
description: From 1983 until 1989 NOAA-NCEI compiled the NOAA-MMS Marine Minerals Geochemical Database from journal articles, technical reports and unpublished sources from other institutions. At the time it was the most extended data compilation on ferromanganese deposits world wide. Initially published in a proprietary format incompatible with present day standards it was jointly decided by AWI and NOAA to transcribe this legacy data into PANGAEA. This transfer is augmented by a careful checking of the original sources when available and the encoding of ancillary information (sample description, method of analysis...) not present in the NOAA-MMS database.
description: Supplement to: Pawson, D L (1982): Deep-sea echinoderms in the Tongue of the Ocean, Bahama Islands: a survey, using the research submersible Alvin. Australian Museum Memoir, 16, 129-145
DOI: 10.1594/pangaea.905497
title: Southern Ocean Marginal Ice Zone Photographs from a 2019 Winter Research Cruise (SA Agulhas II)

description: These photographs of sea ice were taken from the South Africa's polar research vessel, the SA Agulhas II during the 2019 Southern oCean seAsonaL Experiment (SCALE) cruise. Images show various kinds of sea ice found in the marginal ice zone (MIZ). They were taken as a supplementary resource in understanding how in-situ conditions compare to those described by remote-sensed and modelled sea ice data.
DOI: 10.1594/pangaea.676954
title: Ages and types of sedimentary rocks from Hole VNIIO-1985-82 drilled in the Barents Sea
DOI: 10.1594/pangaea.828588
title: Magnetic remanence from IODP Hole 323-U1340A

description: Geocode = Depth CSF-A (m)
DOI: 10.1594/pangaea.499780
title: Visual core description and core images of Hole 310-M0009E
DOI: 10.1594/pangaea.901838
title: Simulations of millennial-scale climate variability influence on Northern Hemisphere ice sheet mean state

description: This study mainly focuses on the millennial-scale climate variability influence on the Northern Hemisphere ice sheet evolution during the past glacial-interglacial cycles. We use the 3D thermodynamical Parallel Ice Sheet Model (PISM) version 0.7.3 to simulate the ice sheets. An index method is used to generate the climate between these states to force the model. In this method, the time-dependent climate evolution is represented by the combination of a time series and two extreme climate conditions. We conducted two experiments. In the first experiment, the ice sheet model is forced with climate that contains millennial-scale oscillations (GL_hf). In the other experiment, the millennial-scale oscillations are removed (GL_lf). The results show that the simulated ice sheet volume is significantly reduced when forced with large amplitude climate fluctuations compared to the case without. Sensitivity experiments are also conducted to see how the amplitude of climate noise affects the simulated ice sheets.
description: Supplement to: Niu, Lu; Lohmann, Gerrit; Gowan, Evan J (2019): Climate noise influences ice sheet mean state. Geophysical Research Letters
DOI: 10.1594/pangaea.899403
title: CICE output from Global Ocean Forecast System (GOFS) 3.1 for 2019022612

description: INITIALIZATION: 2019022612FORECASTS:12-hrly out to 7.5 days (t180)GRIDS:ARCu0.08 -- poleward of 40NANTu0.08 -- poleward of 49.52SPARAMETERS:hi:standard_name = "sea_ice_thickness" ;hs:standard_name = "surface_snow_thickness" ;Tsfc:standard_name = "surface_temperature_where_sea_ice" ;aice:standard_name = "sea_ice_area_fraction" ;uvel:standard_name = "eastward_sea_ice_velocity" ;vvel:standard_name = "northward_sea_ice_velocity" ;sst:standard_name = "sea_water_temperature" ;uocn:standard_name = "eastward_sea_water_velocity" ;vocn:standard_name = "northward_sea_water_velocity" ;Tair:standard_name = "air_temperature" ;strength:standard_name = "compressive_strength_of_sea_ice" ;
DOI: 10.1594/pangaea.828568
title: Reflectance spectroscopy and colorimetry from IODP Hole 323-U1341C

description: Geocode = Depth CSF-A (m)
DOI: 10.1594/pangaea.828597
title: Magnetic remanence from IODP Hole 323-U1342D

description: Geocode = Depth CSF-A (m)
DOI: 10.1594/pangaea.828490
title: Pass-through measurements of magnetic susceptibility from IODP Hole 323-U1345B

description: Geocode = Depth CSF-A (m)
DOI: 10.1594/pangaea.893365
title: Distribution and abundance of planktic foraminifera (&gt;150 µm) in sediment core MD99-2202
DOI: 10.1594/pangaea.811150
title: (Table 1) Hepatic EROD activity and and retinoid concentrations in the liver, and plasma thyroid hormones of northern fulmars (Fulmarus glacialis) from Bjørnøya

description: We investigated whether the hepatic cytochrome P450 1A activity (measured as 7-ethoxyresorufin-O-deethylase (EROD)) and plasma thyroid hormone and liver retinoid concentrations were explained by liver and blood levels of halogenated organic contaminants (HOCs) in free-ranging breeding northern fulmars (Fulmarus glacialis) from Bjornoya in the Norwegian Arctic. Hepatic EROD activity and liver levels of 2,3,7,8-tetrachlorodibenzo-p-dioxin toxic equivalents (TEQs) were positively correlated, suggesting that hepatic EROD activity is a good indicator for dioxin and dioxin-like HOC exposure in breeding northern fulmars. There were not found other strong relationships between HOC concentrations and hepatic EROD activity, plasma thyroid or liver retinoid concentrations in the breeding northern fulmars. It is suggested that the HOC levels found in the breeding northern fulmars sampled on Bjornoya were too low to affect plasma concentrations of thyroid hormones and liver levels of retinol and retinyl palmitate, and that hepatic EROD activity is a poor indicator of polychlorinated biphenyl (PCB) and pesticide exposure.
description: Data extracted in the frame of a joint ICSTI/PANGAEA IPY effort, see http://doi.pangaea.de/10.1594/PANGAEA.150150
description: Supplement to: Helgason, Lisa Bjørnsdatter; Verreault, Jonathan; Braune, Birgit M; Borgå, Katrine; Primicerio, Raul; Jenssen, Bjørn Munro; Gabrielsen, Geir W (2010): Relationship between persistent halogenated organic contaminants and TCDD-toxic equivalents on EROD activity and retinoid and thyroid hormone status in northern fulmars. Science of the Total Environment, 408(24), 6117-6123
DOI: 10.1594/pangaea.898938
title: North Sea Gas Release Experiment with link to ROV video during station CE12010_44

description: Video showing the gas release experiment, which has been conducted at ~80 m water depth in the vicinity of the Sleipner CO2 storage site in the North Sea. The gas discharge was observed in situ during a 4 hour dive with GEOMAR's remotely operated vehicle ROV Kiel 6000 equipped with HD camera/video device.
description: Copyright from video exif data: Helmholtz-Zentrum fuer Ozeanforschung Kiel GEOMAR; All Rights Reserved. The media-item can be used without additional charges for editorial purposes only and must be related to the GEOMAR. The source must be cited. For commercial use a written explicit permission of the author is required.
description: Supplement to: Vielstädte, Lisa; Linke, Peter; Schmidt, Mark; Sommer, Stefan; Haeckel, Matthias; Braack, Malte; Wallmann, Klaus (2019): Footprint and detectability of a well leaking CO₂ in the Central North Sea: Implications from a field experiment and numerical modelling. International Journal of Greenhouse Gas Control, 84, 190-203
DOI: 10.1594/pangaea.900437
title: Ceilometer raw data measured at Neumayer Station (2019-01), links to files

description: The ceilometer is mounted on the roof of the station building, the height offset was set to 25m. This offset only affects the detected cloud levels, not the full backscatter profile.
DOI: 10.1594/pangaea.898870
title: COAWST model output for 10 typical, maximum and minimum representative years for Madeira and Porto Santo Islands current studies

description: COAWST model output for 10 typical, maximum and minimum representative years for Madeira and Porto Santo Islands current studies. Variables included at @ 0, 50, 100 and 200 m depth are current velocity, current direction and power density. This data represents the long-term, maximum and minimum climatology through a single year, constructed from a long-term period of 10 years measured data. Each climatology has twelve individual monthly simulations. The data has 1 km resolution, provided from COAWST. A coupled model with Weather Research and Forecasting (WRF), Regional Ocean Modelling System (ROMS) and WaveWatch III (WW3). Data in netcdf4 format. Note: Data visualization available at: https://oom.arditi.pt/index.php?page=produtos
DOI: 10.1594/pangaea.905931
title: (Table S5) Seasonal oxygen, nutrient, Mn, and Fe data for intertidal pore waters and adjacent seawater of Spiekeroog Island North Beach (Germany)

description: Nutrient values below limit (#99) of quantification, but above limit of detection are shown as second values. All Nutrients were filtered by 0.45 µm. The actual limit of quantification is assumed to be lower than the operationally defined limit of quantification (lowest calibration point).
DOI: 10.1594/pangaea.828576
title: Reflectance spectroscopy and colorimetry from IODP Hole 323-U1344A

description: Geocode = Depth CSF-A (m)
DOI: 10.1594/pangaea.890235
title: CICE output from Global Ocean Forecast System (GOFS) 3.1 for 2018050912

description: INITIALIZATION: 2018050912FORECASTS:12-hrly out to 7.5 days (t180)GRIDS:ARCu0.08 -- poleward of 40NANTu0.08 -- poleward of 49.52SPARAMETERS:hi:standard_name = "sea_ice_thickness" ;hs:standard_name = "surface_snow_thickness" ;Tsfc:standard_name = "surface_temperature_where_sea_ice" ;aice:standard_name = "sea_ice_area_fraction" ;uvel:standard_name = "eastward_sea_ice_velocity" ;vvel:standard_name = "northward_sea_ice_velocity" ;sst:standard_name = "sea_water_temperature" ;uocn:standard_name = "eastward_sea_water_velocity" ;vocn:standard_name = "northward_sea_water_velocity" ;Tair:standard_name = "air_temperature" ;strength:standard_name = "compressive_strength_of_sea_ice" ;
DOI: 10.1594/pangaea.934909
title: Age determination of Aero (AERO-4) peat core from Canada

description: 14C and 210Pb age determination of a high-resolution peat core from the Past Global Changes - Carbon in Peat on EArth through Time (PAGES_C-PEAT) Project.
DOI: 10.1594/pangaea.905367
title: Analog laboratory experiments of the formation of forced folds and sand injections driven by pore fluid overpressure

description: Sand injections form by intrusion of overpressured, fluidized sand into surrounding low-permeable, fine-grained rocks. We conducted a series of scaled analog experiments to investigate the kinematic evolution of sand injections originating from an overpressured, tabular source layer associated with forced folding and propagation of fractures. The experiments were performed in the analog laboratory of the Institute of Geosciences (Friedrich Schiller University Jena) in the framework of the project "Mobilization of Unconsolidated Sediments Related to CO2 Storage". The layering of the analog materials consisted of non-cohesive and cohesive granulates to mimic a sand reservoir and its fine-grained overburden. To produce a fluid overpressure in the layered materials, air was injected from the base of the reservoir layer and additionally through a point-like needle valve penetrating into the reservoir layer. Pressure sensors recorded the air pressure at the base of the reservoir layer and in the needle valve. The experiments were monitored with a digital SLR camera and analyzed by the digital image correlation software DaVis 10.0 (LaVision GmbH) to calculate displacement and strain patterns in the analog materials. The data set presented here includes (1) original data:- Photos of the experimental evolution- Data of volumetric air flow rate and air pressure recorded during the experiments and(2) analyzed data: - Results of digital image correlation including edited photographs as well as data and plots of the displacement vector fields- Edited photos and a Python script for analyzing the vertical displacements of the experimental surface. Detailed descriptions of the experiments, method and results can be found in Warsitzka, et al. (2019) to which this data set is supplement.
description: Supplement to: Warsitzka, Michael; Kukowski, Nina; May, Franz (2019): The formation of forced Folds and wing-like sand intrusions driven by pore fluid overpressure: Implications from 2D experimental modeling. Journal of Geophysical Research: Solid Earth
DOI: 10.1594/pangaea.827303
title: P-Wave velocity (PWL) from IODP Hole 329-U1368C

description: Geocode = Depth CSF-A (m)
DOI: 10.1594/pangaea.899573
title: Emerging evidence that armed conflict and coca cultivation influence deforestation patterns

description: The effect of armed conflict on deforestation in biodiverse regions across Earth remains poorly understood. Its association with factors like illegal crop cultivation can obscure its effect on deforestation patterns. We used Colombia, a global biodiversity hotspot with a complex political history, to explore the association of both armed conflict and coca cultivation with deforestation patterns. We generated spatial predictions of deforestation pressure based on the period 2000-2015 to understand how armed conflict and coca cultivation are associated with spatial patterns of deforestation and assess the spatial distribution of deforestation pressure induced by armed conflict and coca cultivation. Deforestation was positively associated with armed conflict intensity and proximity to illegal coca plantations. A deforestation model including 14 variables was 67% accurate in predicting deforestation at a 10 km² resolution; removing armed conflict and coca cultivations from the deforestation model reduced its accuracy by 6%. Deforestation pressure induced by armed conflict and coca cultivation was highest in Tumaco and Catatumbo regions and in la Macarena, Sierra Nevada and San Lucas mountains—all areas of high biodiversity and conservation importance. In some regions, lack of governance after the peace accords is increasing armed conflict, and our results suggest that those increases in conflict may increase deforestation in those areas. The methods used here can be replicated to help understand the complex ways in which armed conflict affects deforestation patterns in other regions.
description: - Colombia forest cover map 2000- Colombia forest cover map 2010- Colombia forest cover map 2015- Elevation- Slope- Biotic Regions- Soil Erosion- Colombia Departments- Population Density by km²- Distance to nearest previous deforested area- Distance to nearest navigable river- Distance to nearest paved road- Distance to nearest unpaved road- National Park- Indigenous reserve- Afro-Colombian collective lands- Distance to nearest coca plantation- Distance to nearest mining concession- Distance to nearest exploited oil well- Number of armed actions per area- Map of deforestation pressure with the full model- Map of deforestation pressure due to armed conflict- Map of deforestation pressure due to coca plantations- Map of deforestation pressure due to armed conflict and coca plantations
description: Supplement to: Negret, Pablo Jose; Sonter, Laura; Watson, James E M; Possingham, Hugh P; Jones, Kendall R; Suarez, Cesar; Ochoa-Quintero, Jose Manuel; Maron, Martine (2019): Emerging evidence that armed conflict and coca cultivation influence deforestation patterns. Biological Conservation, 239, 108176
DOI: 10.1594/pangaea.934911
title: Age determination of Aero (AERO-M2) peat core from Canada

description: 14C and 210Pb age determination of a high-resolution peat core from the Past Global Changes - Carbon in Peat on EArth through Time (PAGES_C-PEAT) Project.
DOI: 10.1594/pangaea.934726
title: Age determination of Romaine (HP3A) peat core from Canada

description: 14C and 210Pb age determination of a high-resolution peat core from the Past Global Changes - Carbon in Peat on EArth through Time (PAGES_C-PEAT) Project.
DOI: 10.1594/pangaea.898922
title: Operational atmospheric forecast data for Madeira archipelago with COAWST model

description: The atmospheric forecast data for Madeira archipelago is updated daily. It has 4 days of forecast, stored hourly, for a period of time of the last 30 days up to the present. The variables included are CFRACT, F, MAPFAC_M, MAPFAC_U, MAPFAC_V, P, PB, PBLH, PH, PHB, PSFC, Q2, QVAPOR, RAINC, RAINNC. The data has 1 km resolution, provided from COAWST. A coupled model with Weather Research and Forecasting (WRF), Regional Ocean Modelling System (ROMS) and WaveWatch III (WW3). Data in netcdf4 format. Note: Data visualization available at: https://oom.arditi.pt/index.php?page=produtos