cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5909575
title: GRAND-SLAM analysis of HCMV infection of ZAP knockout cells from Gonzalez-Perez et al., mBio 2021 (https://doi.org/10.1128/mbio.02683-20)

description: This is the processed SLAM-seq data from Gonzalez-Perez et al., mBio 2021 (https://doi.org/10.1128/mbio.02683-20). The zip file contains the full output from the processing pipeline (including the mapped reads, the scripts to run the pipeline and the output). The json file is required if you want to start from scratch. The file sars.tsv.gz is the GRAND-SLAM output table. <br> To generate the GRAND-SLAM output yourself, first prepare the human (ensembl v90) and the HCMV genome (EF999921). Then run: gedi -e Slam -double -reads sars.cit -genomic h.ens90 HCMV_TB40_BAC4 -prefix grandslam_du/zap_bac4 -plot -progress [Zum Verschieben anwählen und ziehen] To generate the cit file you have to modify the first lines in start.bash to match the paths on your file system, and then run it. You can also start from scratch (i.e., the json file): Prepare the human genome (ensembl v90), the HCMV genome (EF999921), the human rRNA sequence (U13369.1), and the Mycoplasma hominis sequence<br> Prepare the joint STAR index for the human and virus genome by calling gedi -e GenomicUtils -p -m star -g h.ens90 HCMV_TB40_BAC4<br> Modify the starindex entry in the json file to match your file system<br> Run: gedi -e Pipeline -r parallel -j zap_bac4.json rnaseq_mapping.sh report.sh grandslam.sh Software versions: gedi toolkit 1.0.2<br> GRAND-SLAM 2.0.5a<br> Trimmomatic 0.39<br> STAR version 2.5.3a
DOI: 10.6084/m9.figshare.17484854
title: Supplementary Material for: Mitochondrial dysfunction in trauma-related coagulopathy – Is there causality? – Study protocol for a prospective observational study

description: Hemorrhage control often poses a great challenge for clinicians due to trauma-induced coagulopathy (TIC). The pathogenesis of TIC is not completely revealed; however, growing evidence attributes a central role to altered platelet biology. The activation of thrombocytes and subsequent clot formation are highly energetic processes being tied to mitochondrial activity, and the inhibition of the electron transport chain (ETC) impedes on thrombogenesis, suggesting the potential role of mitochondria in TIC. Our present study protocol provides a guide to quantitatively characterize the derangements of mitochondrial functions in TIC. One hundred eleven severely injured (Injury Severity Score ≥16), bleeding trauma patients with an age of 18 or greater will be included in this prospective observational study. Patients receiving oral antiplatelet agents including cyclooxygenase-1 or adenosine diphosphate receptor inhibitors (aspirin, clopidogrel, prasugrel, and ticagrelor) will be excluded from the final analysis. Hemorrhage will be confirmed and assessed with computer tomography. Conventional laboratory markers of hemostasis such as prothrombin time and international normalized ratio (INR) will be measured and rotational thromboelastometry (ROTEM) will be performed directly upon patient arrival. Platelets will be isolated from venous blood samples and subjected to high-resolution fluororespirometry (Oxygraph-2k, Oroboros Instruments, Innsbruck, Austria) to evaluate the efficacy of mitochondrial respiration. Oxidative phosphorylation (OxPhos), coupling of the ETC, mitochondrial superoxide formation, mitochondrial membrane potential changes and extramitochondrial Ca2+-movement will be recorded. The association between OxPhos capacity of platelet mitochondria and numerical parameters of ROTEM aggregometry will constitute our primary outcome. The relation between OxPhos capacity and results of viscoelastic assays and conventional markers of hemostasis will serve as secondary outcomes. The association of the OxPhos capacity of platelet mitochondria upon patient arrival to the need for massive blood transfusion (MBT) and 24-hour mortality will constitute our tertiary outcomes. Mitochondrial dysfunction and its importance in TIC in are yet to be assessed for the deeper understanding of this common, life-threatening condition. Disclosure of mitochondria-mediated processes in thrombocytes may reveal new therapeutic targets in the management of hemorrhaging trauma patients, thereby leading to a reduction of potentially preventable mortality. The present protocol was registered to ClinicalTrials.gov on 12 August 2021, under the reference number NCT05004844.
DOI: 10.3886/e160762v1
title: Issue-Areas, Sovereignty Costs, and North Americans’ Attitudes Towards Regional Cooperation

description: Studies of public opinion towards regionalism tend to rely on questions regarding trade integration and specific regional organizations. This narrow focus overlooks dimensions of regionalism that sit at the heart of International Relations research on regions today. Instead, we argue that research should explore public preferences with respect to regional cooperation in different issue-areas. We find that people’s views of regional cooperation in North America diverge from their attitudes towards trade integration alone. Using data from Rethinking North America (RNA), an untapped public opinion survey conducted in Mexico, Canada, and the US in 2013, we show that although country-level attitudes towards trade integration in North America were similar, preferences for regional cooperation varied by country depending on the issue at hand. We propose that attitudes are shaped by citizens’ perceptions of the asymmetric patterns of national-level benefits and vulnerabilities created by regional cooperation. Generally, respondents favor cooperation where their state stands to gain greater capacity benefits and oppose it where cooperation imposes greater costs on national autonomy. For policymakers, this multifaceted approach to regionalism sheds light on areas where public preferences for regional cooperation might converge. Future research that disaggregates various aspects of support for regional cooperation should help integrate the study of public opinion with “new” and comparative regional approaches that emphasize aspects of regionalism beyond trade and formal institutions.
DOI: 10.48370/ofd/1f0kzr
title: Athelia decipiens (Hӧhn. Litsch.) J.Erikss., 1218

description: Fungarium Macromycetes
DOI: 10.48370/ofd/sqtzbk
title: Athelia decipiens (Hӧhn. Litsch.) J.Erikss., 112

description: Fungarium Macromycetes
DOI: 10.14457/tu.the.2020.890
title: The analysis of the translation quality and translation strategies used in the menus translated into English in the online food delivery service in Thailand

description: Due to the heavy traffic congestion, time constraints and COVID-19 restriction, online food delivery services in Thailand have become increasingly active. People can comfortably access the online food delivery services by using their electronic devices. Some websites and mobile applications also have English-translated versions available to serve the needs of foreigners to increase the turnover. This study aimed (1) to identify the translation strategies used in the menus translated into English, (2) to identify the English translation patterns, and (3) to investigate the quality of the English version menus. 89 Thai food menus with English translation were checked by the researcher to explore the translation strategies and translation patterns employed. To analyze the quality of the English translated menus, a translation evaluation form was incorporated after completing the document gathering. The results revealed that Baker’s (2011) translation strategies could not cover all the items found in the translated version of the menus. Literal translation was employed for the menus using universal cooking methods. For translation pattern, the results showed that seven out of eight Low’s (2015) English translation patterns were employed to cope with the menu items. In the case of quality, none of the average of each criterion, which are grammaticality, accuracy, style, terminology, and cultural substitution, received low scores. However, interesting data also emerged.
DOI: 10.14457/tu.the.2020.891
title: Analysis of secondary school Thai ESL students English listening problems

description: This study aimed to analysis of secondary schools THAI ESL students English listening problems and explore the teaching methods used by native speakers and Thai teachers to teach listening skills in class. The participants in this study were 80 students and three native speakers and three Thai teachers in Bangkok, who sat for interviews. A total of 15 close-ended statements using a Likert scale and an open-ended question were provided in the questionnaire. The data were analyzed using SPSS (Statistical Package for the Social Sciences) in order to calculate frequencies, means, and standard deviations (SD). The findings showed that most of the respondents sometimes had listening problems when they listen to foreign teachers in class. The problems were caused by unknown vocabulary, long messages, and the physical setting, as well as factors related to the listeners and speakers. The findings of this study may be useful for teachers at the secondary level, helping them to find ways to improve their students’ English listening skills and design course materials and teaching strategies to meet students’ needs.
DOI: 10.6084/m9.figshare.19076762
title: Supplementary Material for: Anxiolytic Effects of Chronic Intranasal Oxytocin on Neural Responses to Threat Are Dose-Frequency Dependent

description: <b><i>Introduction:</i></b> Anxiety disorders are prevalent mental conditions characterized by exaggerated anxious arousal and threat reactivity. Animal and human studies suggest an anxiolytic potential of the neuropeptide oxytocin (OT), yet, while a clinical application will require chronic administration protocols, previous human studies have exclusively focused on single-dose (acute) intranasal OT effects. <b><i>Objective:</i></b> To facilitate the translation of the potential anxiolytic mechanism of OT into clinical application, we determined whether the anxiolytic effects of OT are maintained with repeated (chronic) administration or are influenced by dose frequency and trait anxiety. <b><i>Methods:</i></b> In a pre-registered double-blind randomized placebo-controlled pharmaco-fMRI trial the acute (single dose) as well as chronic effects of two different dose frequencies of OT (OT administered daily for 5 days or every other day) on emotional reactivity were assessed in <i>n</i> = 147 individuals with high versus low trait anxiety (ClinicalTrials.gov ID: NCT03085654). <b><i>Results:</i></b> OT produced valence, dose frequency, and trait anxiety-specific effects, such that the low-frequency (intermittent) chronic dosage specifically attenuated a neural reactivity increase in amygdala-insula-prefrontal circuits observed in the high anxious placebo-treated subjects in response to threatening but not positive stimuli. <b><i>Conclusions:</i></b> The present trial provides the first evidence that low-dose frequency chronic intranasal OT has the potential to alleviate exaggerated neural threat reactivity in subjects with elevated anxiety levels, suggesting a treatment potential for anxiety disorders.
DOI: 10.5519/qd.a5pzzwit
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5 records)
DOI: 10.5281/zenodo.5910179
title: Predictors of reproductive and non-reproductive outcomes of gonadotropin mediated pubertal induction in male patients with congenital hypogonadotropic hypogonadism (CHH) dataset

description: Dataseta for Predictors of reproductive and non-reproductive outcomes of gonadotropin mediated pubertal induction in male patients with congenital hypogonadotropic hypogonadism (CHH) <strong>10.1007/S40618-021-01556-X</strong>
DOI: 10.5281/zenodo.5909766
title: LINCS - preprocessed

description: LINCS - PDRGC - preprocessed
DOI: 10.5281/zenodo.5880025
title: LINCS - preprocessed

description: LINCS - PDRGC - preprocessed
DOI: 10.25345/c5qk31
title: MassIVE MSV000088738 - Bacterial Proteomics - AMPs stressing action
title: Untargeted Proteomics of full protein extract of Listeria monocytogenes cultures with sublethal concentrations of nisin and fengycin.
DOI: 10.5281/zenodo.5910217
title: Central hypogonadism in Klinefelter syndrome: report of two cases and review of the literature, Table

description: <strong>Review of previously published reports of hypogonadotropic hypogonadism in Klinefelter syndrome (KS).</strong> Ys, years. N/A, not assessed. HH, hypogonadotropic hypogonadism. T, total testosterone. LH, luteinizing hormone. FSH, follicle stimulating hormone. LHRH, LH releasing hormone. hCG, human chorionic gonadotropin. GH, growth hormone. ACTH, adrenocorticotropin. TSH, thyroid stimulating hormone. CHH, congenital hypogonadotropic hypogonadism. Table of <strong>10.1007/S40618-020-01324-3</strong>
DOI: 10.5281/zenodo.5910216
title: Central hypogonadism in Klinefelter syndrome: report of two cases and review of the literature, Table

description: <strong>Review of previously published reports of hypogonadotropic hypogonadism in Klinefelter syndrome (KS).</strong> Ys, years. N/A, not assessed. HH, hypogonadotropic hypogonadism. T, total testosterone. LH, luteinizing hormone. FSH, follicle stimulating hormone. LHRH, LH releasing hormone. hCG, human chorionic gonadotropin. GH, growth hormone. ACTH, adrenocorticotropin. TSH, thyroid stimulating hormone. CHH, congenital hypogonadotropic hypogonadism. Table of <strong>10.1007/S40618-020-01324-3</strong>
DOI: 10.5517/ccdc.csd.cc20ql9n
title: CCDC 1868751: Experimental Crystal Structure Determination

description: Related Article: Fan Li, Yun-Si Hong, Kai-Xi Zuo, Qian Sun, En-Qing Gao|2019|J.Solid State Chem.|270|509|doi:10.1016/j.jssc.2018.12.025
DOI: 10.5517/ccdc.csd.cc286jst
title: CCDC 2091656: Experimental Crystal Structure Determination

description: Related Article: Pooja Daga, Sayani Hui, Sourav Sarkar, Prakash Majee, Debal Kanti Singha, Partha Mahata, Sudip Kumar Mondal|2021|Mat.Advs.|3|1182|doi:10.1039/D1MA00980J
DOI: 10.5517/ccdc.csd.cc26x34d
title: CCDC 2052793: Experimental Crystal Structure Determination

description: Related Article: Hao Zhang, Hongjie Zhu, Haitao Zhao, Mingyu Dou, Xingliang Yin, Hua Yang, Dacheng Li, Jianmin Dou|2022|J.Photochem.Photobiol.A:Chem.|426|113771|doi:10.1016/j.jphotochem.2022.113771
DOI: 10.5517/ccdc.csd.cc26x35f
title: CCDC 2052794: Experimental Crystal Structure Determination

description: Related Article: Hao Zhang, Hongjie Zhu, Haitao Zhao, Mingyu Dou, Xingliang Yin, Hua Yang, Dacheng Li, Jianmin Dou|2022|J.Photochem.Photobiol.A:Chem.|426|113771|doi:10.1016/j.jphotochem.2022.113771
DOI: 10.5517/ccdc.csd.cc28j8z2
title: CCDC 2101024: Experimental Crystal Structure Determination

description: Related Article: Dnyaneshwar I. Bhusanur, Dinesh N. Nadimetla, Sarvesh S. Harmalkar, Rajesh S. Bhosale, Avinash L. Puyad, Sopan M. Wagalgave, Sidhanath V. Bhosale, Sheshanath V. Bhosale|2022|J.Mol.Struct.|1255|132452|doi:10.1016/j.molstruc.2022.132452
DOI: 10.5517/ccdc.csd.cc28l2b9
title: CCDC 2102740: Experimental Crystal Structure Determination

description: Related Article: Luiz F. T. Novaes, Justin S. K. Ho, Kaining Mao, Kaida Liu, Mayank Tanwar, Matthew Neurock, Elisia Villemure, Jack A. Terrett, Song Lin|2022|J.Am.Chem.Soc.|144|1187|doi:10.1021/jacs.1c09412
DOI: 10.5517/ccdc.csd.cc28l2cb
title: CCDC 2102741: Experimental Crystal Structure Determination

description: Related Article: Luiz F. T. Novaes, Justin S. K. Ho, Kaining Mao, Kaida Liu, Mayank Tanwar, Matthew Neurock, Elisia Villemure, Jack A. Terrett, Song Lin|2022|J.Am.Chem.Soc.|144|1187|doi:10.1021/jacs.1c09412
DOI: 10.5517/ccdc.csd.cc28q19c
title: CCDC 2106552: Experimental Crystal Structure Determination

description: Related Article: Manel Ben Hammouda, Sarra Boudriga, Khaled Hamden, Moheddine Askri, Michael Knorr, Carsten Strohmann, Lukas Brieger, Anna Krupp, El Hassane Anouar, Mejdi Snoussi, Kaïss Aouadi, Adel Kadri|2022|J.Mol.Struct.|1254|132398|doi:10.1016/j.molstruc.2022.132398
DOI: 10.5517/ccdc.csd.cc28vcq7
title: CCDC 2110719: Experimental Crystal Structure Determination

description: Related Article: Khodayar Gholivand, Mohammad Faraghi, Nasrin Fallah, Mohammad Satari, Mahsa Pooyan|2022|Bioorg.Chem.|120|105617|doi:10.1016/j.bioorg.2022.105617
DOI: 10.5517/ccdc.csd.cc291z0c
title: CCDC 2117052: Experimental Crystal Structure Determination

description: Related Article: Na Lin, Xinghui Wu, Zhengxu Cai, Jianbing Shi, Bin Tong, Yuping Dong|2022|Dyes Pigm.|199|110091|doi:10.1016/j.dyepig.2022.110091
DOI: 10.5517/ccdc.csd.cc291z8m
title: CCDC 2117060: Experimental Crystal Structure Determination

description: Related Article: Na Lin, Xinghui Wu, Zhengxu Cai, Jianbing Shi, Bin Tong, Yuping Dong|2022|Dyes Pigm.|199|110091|doi:10.1016/j.dyepig.2022.110091
DOI: 10.5517/ccdc.csd.cc291zcq
title: CCDC 2117063: Experimental Crystal Structure Determination

description: Related Article: Na Lin, Xinghui Wu, Zhengxu Cai, Jianbing Shi, Bin Tong, Yuping Dong|2022|Dyes Pigm.|199|110091|doi:10.1016/j.dyepig.2022.110091
DOI: 10.48370/ofd/b9tkgp
title: Peniophora incarnata (Pers.) P. Karst, 488

description: Fungarium Makromycetes
DOI: 10.7303/syn26952206
title: Integrating whole-genome sequencing with multi-omic data reveals the impact of structural variants on gene regulation in the human brain
DOI: 10.5281/zenodo.5904993
title: The impacts of management interventions on the sociality of African lions (Panthera leo): implications for lion conservation

description: African lion (<em>Panthera leo</em>) populations normally consist of several neighbouring prides and multiple adult males or groups of males that interact competitively. In large, open systems, cub defence from infanticidal males and territory defence drive group living in lions. However, in smaller (&lt; 1,000 km<sup>2</sup>), fenced wildlife reserves, opportunities for natural immigration and emigration are limited which means that the evolutionary drivers of lion sociality may collapse. Here, we use lion behavioural data collected from 16 wildlife reserves across South Africa to test how management-induced ecological conditions alter lion social dynamics. The number of lionesses observed together was best predicted by pride size, prey biomass and biome. Lionesses were less likely to group together as pride size increased, but more likely to group together as prey biomass and habitat productivity increased. In addition, adult males were observed more frequently with prides that had young (&lt; 12 months) cubs in reserves that had unfamiliar adult males present compared to reserves without any unfamiliar adult males. Our results demonstrate how intra-specific competition between lions drives their sociality, and this may break down in small, fenced wildlife reserves where lions are actively managed. Although small, fenced reserves in South Africa have made a significant contribution to increasing lion numbers on the continent, our work highlights several important ecological implications of active lion management. For wildlife managers, mimicking the outcomes of different levels of intra-specific competition is likely a critical management tool for the persistence of lions in small reserves.
DOI: 10.48370/ofd/881wwh
title: Athelia decipiens (Hӧhn. Litsch.) J.Erikss., 2193

description: Fungarium Macromycetes
DOI: 10.6084/m9.figshare.19076831
title: Supplementary Material for: Outcomes after Prolonged Weaning in Chronic Obstructive Pulmonary Disease Patients: Data from the German WeanNet Initiative

description: <b><i>Background:</i></b> The outcome of prolonged weaning in COPD patients is still unclear. <b><i>Methods:</i></b> A subgroup analysis of 2,937 COPD patients (median: age 69 years, 5 comorbidities, 43% female) from the entire WeanNet cohort of specialized German weaning centers previously published (<i>N</i> = 11,424) was performed. <b><i>Results:</i></b> Weaning outcomes were as follows: successful weaning without subsequent long-term noninvasive ventilation (NIV): <i>N</i> = 900; 30.6%; successful weaning with subsequent long-term NIV: <i>N</i> = 900; 30.6%; weaning failure with subsequent long-term invasive ventilation: <i>N</i> = 780; 26.6%; and death: <i>N</i> = 357; 12.2%. Most important predictors of mortality and weaning failure were advanced age and duration of mechanical ventilation in the transferring ICU, respectively. On discharge, the tracheostoma was closed in only 53% and 59% of patients with successful weaning not receiving and receiving long-term NIV, respectively. Unsuccessfully weaned patients were predominantly discharged home (20.5%) or to long-term care facilities (57.2%). Successfully weaned patients were predominantly discharged home (22.4%/35.9%: without/with NIV) and to rehabilitation (41.0%/43.1%: without/with NIV), respectively. <b><i>Conclusion:</i></b> COPD forms an important subgroup of prolonged weaning patients. Following transfer from the ICU to a specialized weaning center, weaning is successful more than 60%. Importantly, both tracheostomy status and initial destination following discharge are highly dependent on the weaning outcome.
DOI: 10.15151/esrf-es-661814538
title: Study of painting fragments (Bamyian and AkzoNobel)

description: This experiment aims at measuring element maps in industrial and historical painting fragments.
DOI: 10.48370/ofd/7xo6kc
title: Peniophora incarnata (Pers.) P. Karst, 1092

description: Fungarium Makromycetes
DOI: 10.18154/rwth-2021-05390
title: Datensatz zu "Diskrepanz des Partikeldurchlasses von 101 Maskenchargen im ersten Jahr der Covid-19-Pandemie in Deutschland"
title: Dataset to "Discrepancy of particle passage in 101 mask batches during the first year of the Covid-19 pandemic in Germany"

description: During the first wave of Covid-19 infections in Germany in April 2020, clinics reported a shortage of filtering face masks with aerosol retention &gt; 94% (FFP2 & 3, KN95, N95). Companies all over the world increased their production capacities, but quality control of once-certified materials and masks came up short. To help identify falsely labeled masks and ensure safe protection equipment, we tested 101 different batches of masks in 993 measurements with a self-made setup based on DIN standards. An aerosol generator provided a NaCl test aerosol which was applied to the mask. A laser aerosol spectrometer measured the aerosol concentration in a range from 90 to 500 nm to quantify the masks’ retention. Of 101 tested mask batches, only 31 batches kept what their label promised. Especially in the initial phase of the pandemic in Germany, we observed fluctuating mask qualities. Many batches show very high variability in aerosol retention. In addition, by measuring with a laser aerosol spectrometer, we were able to show that not all masks filter small and large particles equally well. In this study we demonstrate how important internal and independent quality controls are, especially in times of need and shortage of personal protection equipment.
DOI: 10.48370/ofd/qgyjb6
title: Peniophora incarnata (Pers.) P. Karst, 1096

description: Fungarium Makromycetes
DOI: 10.48370/ofd/9fqily
title: Athelia decipiens (Hӧhn. Litsch.) J.Erikss., 2450

description: Fungarium Macromycetes