cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/73m9trbyg4
title: Intertidal data

description: DEM: Digital Elevation Models (tiff files) from in-situ data and modeled data through two methods (Hybrid - HYB and Traditional Waterline Method - WL).
AOI 1, AOI 2 and AOI 3 in-situ data: Laser Scanner, 20cm uncertainty, 10m resolution (Acquisition: 04 to 07, May 20203).
AOI 4 and AOI 5 in-situ data: drone and RTK, 20cm uncertainty, 10m resolution. (Acquisition: 30 October 2023).
AOI 6 in-situ data: LiDAR, 1m resolution, 20cm uncertainty(Acquisition: October 2019 to October 2022), fully available by New Zealand government database in https://data.linz.govt.nz/.

WATERLINES: dataset of waterlines (HYB) or points along waterlines (WL) with corresponding water level information (Shapefiles). The elevation values are referenced to the local vertical datum specific to each AOI (DHN for Brazil and Moturiki for New Zealand). 
AOI 1, AOI 2 and AOI 3 modeled data: March to August 2023;
AOI 4 and AOI 5 modeled data: July to October 2023.
AOI 6 modeled data: January to May 2019.

AREA: Area of intertidal zone for six AOIs as Shapefiles, where AOI 1 id the flood tide delta, AOI 2 is the upper estuary, and AOI 3 is the flood tide delta on Linguado Channel both from Babitonga Bay (southern Brazil). AOI 4 is a beach located at Vale company on Ponta da Madeira and AOI 5 is the Amor beach, both on São Luís, northeast Brazil. Finally, AOI 6 is Tauranga Bay, on New Zealand.
DOI: 10.17632/hhwxsn9s25
title: Patient perspectives on the lived experience of prurigo nodularis: a qualitative approach. Supplemental material.

description: Supplemental tables to Patient perspectives on the lived experience of prurigo nodularis: a qualitative approach published in the Journal of the American Academy of Dermatology
DOI: 10.6084/m9.figshare.14705793.v1
title: R code to reproduce analysis in manuscript from Social selection is density dependent but makes little contribution to total selection in New Zealand giraffe weevils

description: R code to reproduce analysis in manuscript. Uses the five csv files included in supplementary materials.
DOI: 10.6084/m9.figshare.21153547.v4
title: Tumor tissues of colorectal cancer patients

description: Analysis of tumor-associated microbiota in sporadic colorectal cancer patients with different MLH1 status
DOI: 10.17632/9fhxzgjzy6
title: Investigating the mitigative role of Saccharomyces cerevisiae on spermatogenic indices and fertility in heat stressed male rats

description: Change in global temperature has become an important factor affecting reproduction both in humans and livestock. The testes and scrotum are known to have an intricate regulatory system that maintains sperm concentration and quality. This study aims to investigate the mitigative effect of Saccharomyces cerevisiae on testicular histo-architecture and function in male albino rats subjected to increased thermal temperature. Twenty mature male albino rats were divided into four groups of five rats each and treated once daily per os for a period of five weeks. The control (group A) and positive control (group B) maintained an ambient temperature, with group B treated with Saccharomyces cerevisiae. While the others (groups C & D) were exposed to a temperature of 43°C for 15 mins for every other day, 3 times without and with treatment with Saccharomyces cerevisiae respectively. The model of heat exposure used was the moist heat method. The result of the research revealed a significant decrease (p &lt; 0.05) in the weight of the testes and epididymis, testicular and epididymal sperm count in the animals exposed with no increase in those administered Saccharomyces cerevisiae, compared to the control. The photomicrograph of the testes showed a regeneration of cells in group D after exposure to heat and treatment with Saccharomyces cerevisiae, while group C showed marked degeneration of cells of the seminiferous tubules
DOI: 10.17632/cymynmkxmj
title: Supplementary data of single pixel imaging experiment

description: Supplementary data of the application of single pixel imaging using different Hadamard matrix orders. The orders are Natural, Walsh, Cake-cutting, High Frequency and Random. This dataset includes reconstructed images from simulated and real data. Version 6: Bug fixed for the artifact on Cake-cutting order
DOI: 10.17632/z42wpkbb8k
title: The comprehensive transcriptome of human ductus arteriosus smooth muscle cells (hDASMC)

description: The Ductus Arteriosus (DA) is a fetal vessel that connects the aorta to the pulmonary artery ensuring that placental oxygenated blood is diverted from the lungs to the systemic circulation. Following exposure to oxygen (O2), in the first few days of life, the DA responds with a functional closure that is followed by anatomical closure. Here, we study human DA smooth muscle cells (DASMC) taken from 10 term infants during congenital heart surgery. Purification of these cells using flow cytometry ensured a pure population of DASMCs, which we confirmed as responsive to O2. An oxygen-induced increase in intracellular calcium of 18.1%4.4% and SMC constriction (-27%±1.5% shortening) occurred in all cell lines within five minutes. These cells were maintained in either hypoxia (2.5% O2), mimicking in utero conditions or in normoxia (19% O2) mimicking neonate conditions. We then used 3’ RNAsequencing to identify the transcriptome of DASMCs in each condition
DOI: 10.6084/m9.figshare.12443303.v1
title: Traditional Chinese medicine in oncology: A bibliometrics analysis

description: Figs and Datasets Iin the article "Traditional Chinese medicine in oncology: A bibliometrics analysis". The core dataset is retrieved in WoS using a topic search method. The expanded dataset is considered as the superset of the core dataset. The two datasets are merged into the combined dataset.
DOI: 10.6084/m9.figshare.19593412.v1
title: Data: ddRAD-Seq SNP datasets

description: This collections contains datasets of SNP characterization of individuals of the Northern Grasshopper Mouse (Onychomys leucogaster). All datasets come from the same ddRAD sequencing library. They differ by % missing data allowed for an individual to allow a locus to be retained in the dataset. All datasets are in genepop file format, which by default stores alleles as integers [0, 1, 2] where 0 and 2 are homozygotes. Data processing and pipeline details are in the associated manuscript.
DOI: 10.6084/m9.figshare.28091669.v1
title: <b>Barriers and facilitators to weight loss in individuals with a recent history of weight management attempts</b>

description: Individuals with obesity attempt to lose weight using a variety of interventions and experience several challenges. This study aimed to determine the prevalence of obesity and perceived barriers to weight loss and maintaining an optimum weight in Bahrain.In this cross-sectional study, 1453 Bahraini adults who had used any intervention to lose weight in the past year answered a structured questionnaire. The participants were approached through social media platforms. The univariate and multivariate logistic regression analysis was conducted to
DOI: 10.17632/6587ksptsf
title: Parkinson's disease NCBI GEO

description: NCBI Gene Expression Omnibus (GEO) : GDS2519, GDS2821, GDS3128, GDS3129, GSE19587, GSE20141, GSE20146, GSE20153, GSE20292, GSE20295, and GSE20333, contain gene expression datasets for samples from human brain tissues, especially the substantia nigra region.
DOI: 10.17632/9rnx96ft9k
title: Hubert Widiastono

description: Datasets from Hubert Widiastono for Data in Brief
DOI: 10.17632/tg854n8th8
title: English pronunciation evaluation dataset

description: Dataset of features from the voices of people learning to speak English. This dataset contains the voices of 33 speakers, and for each one of them, there are 840 rows, taking 5 seconds segments and also using data augmentation by speeding up or slowing down the original audio. The columns are: - The speaker identification number - The tag: 0 for low level, 1 for intermediate, 2 for high, - The remaining columns are the features considered in this dataset, such as Zero Crossing rate, Energy, Energy entropy, the Mel Frequency Cepstral Coefficients (MFCC), as well as many others (see first row of the CVS file; all of them are very much standard audio features intended for classification.
DOI: 10.6084/m9.figshare.7214816.v2
title: data-MI.sav

description: <b>Psychometric Evaluation of the Mating Intelligence Scale in Iran</b>
DOI: 10.17632/nr83npywvm
title: Replication package for Too Levered for Pigou: Carbon Pricing, Financial Constraints, and Leverage Regulation

description: his replication package provides Matlab code to replicate the numerical example used in Section 4 of the article "Too Levered for Pigou: Carbon Pricing, Financial Constraints, and Leverage Regulation" in the Journal of Financial Econoimcs. Executing the code requires Matlab and plots Figure 1 in the main text and Figure 2 in the Internet Appendix.

To produce the figures in the paper, the code was executed using Matlab 2023b on a 2023 Macbook Pro.

Authors: Robin Döttling, Magdalena Rola-Janicka

Files:
- readme.txt
- solve_model.m
DOI: 10.6084/m9.figshare.20072795.v1
title: R Markdown scripts for Additional file 2 and 3

description: R Markdown scripts for data analyses and to produce supplementary material (Additional filen 2 and 3). Files and functions therein for RStudio https://www.rstudio.com/ and R https://www.r-project.org/.
DOI: 10.6084/m9.figshare.6984251.v19
title: Channelings

description: Materials related to the Channelings Interviews and described in the paper "Hypno-Channelings: a new tools for investigating channeling experiences".Paper available on https://jcer.com/index.php/jcj/article/view/924<br><br>N_date= original audio interviews in Italian with the channeler NE_date= original audio interviews in Italian with the channeler ED_date= original audio interviews in Italian with the channeler DGroup_date = original audio group interviews in Italian<br>-Group Channelings while in Hypnobe = English translation of multiple channelings interviews-Contents of dialogues with "HIM" = English translation of the channelings with the entity HIM-Agarthian Information = English translation of an Agarthian channeled by E.<br>- Antares's Interviews=English transaltion of an Agarthian, channeled by DD<br>Full version of the essay submitted to the Bigelow contest: "Is human consciousness eternal? Let's ask those in the hereafter to tell us"<br><br>
DOI: 10.17632/ys4mz7cd7y
title: Dataset: Air Quality Index (AQI) of Major Indian Cities and Stations 29/4/2024

description: The dataset contains air quality information for various cities across India. It includes parameters such as Air Quality Index (AQI), concentrations of particulate matter (PM2.5 and PM10), ozone (O3), nitrogen dioxide (NO2), sulfur dioxide (SO2), carbon monoxide (CO), as well as geographical coordinates and time stamps. This dataset enables analysis and comparison of air quality levels among different cities, aiding in understanding environmental health impacts and informing policy decisions.
DOI: 10.17632/zk8vzzjsrd
title: Database for Improving the robustness of retail workforce management with a triple labor flexibility strategy and consideration of demand uncertainty

description: This repository contains datasets associated with the research paper entitled "Improving the robustness of retail workforce management with a triple labor flexibility strategy and consideration of demand uncertainty", which presents a novel solution to a retail personnel scheduling problem (PSP).

The dataset contains three folders called "real data", "processed data", and "simulated data" for the three analyses performed in the computational tests: In-sample, out-of-sample, stochastic approach versus deterministic approach.

The "real data" folder contains only one file called "DP-real", which describes (i) the demand for working hours, differentiated by department and week, (ii) the characteristics of the work contract, including aspects such as the number of annual working hours and average weekly working hours, as well as minimum and maximum weekly working hours; and finally (iii) the cost structure used.

The "processed data" folder contains a file named "Processed_PM-k=2_TM-k=2", which is a dataset that must be constructed to evaluate the PM-k=2 and TM-k=2 experiments. For detailed information on the construction process of these datasets, the reader is referred to Appendix A of the paper by Porto et al. (2022). 

Finally, the "simulated data" folder contains two folders, the first called "In_sample_analysis" and the second called "Out_of_sample_analysis". Each of these folders contains 5 files that describe simulated data of demand considering five variabilities (10% to 50%) and different number of scenarios (i.e., 100 or 1000 ).
DOI: 10.6084/m9.figshare.28067618.v1
title: Single-molecule force spectroscopy data probing mechanical rigidity of ZIKV xrRNA mutants

description: Data from optical-tweezers-based force spectroscopy measurements of mutant ZIKV xrRNA molecules unfolding and refolding, as well as gel-based measurements of RNase resistance of the same mutants. Force-extension curve data are listed in .xls files titled according to the mutation. In each file, data are presented as paired columns of force ("F", values listed in pN) and extension ("Ext", values listed in nm) data for sequential unfolding and refolding measurements (refolding data indicated by "_r" in column titles). The remainder of the column name indicates the molecule number (1, 2,...), followed by an underscore and the set of curves measured from that molecules (1, 2,...), followed by an underscore and the number of the pull within that set (1, 2,...). Each set of pulls is organized in a separate sheet in the file. Gel images are shown in the PDF file, with the values for RNase resistance calculated from them listed in the associated .xls file.
DOI: 10.6084/m9.figshare.29083439.v1
title: Gridded data of embodied carbon from brick

description: 5,538,063 records are weight in urban building ECE of brick in two urban agglomerations from 2000 to 2020 at 500×500m grid scale.
DOI: 10.6084/m9.figshare.4588324.v1
title: HELCATS catalog of predicted coronal mass ejection arrivals ARRCAT

description: This catalog lists arrivals of solar coronal mass ejections at various spacecraft and planets predicted with the STEREO heliospheric imager instruments, between April 2007 - September 2014.<br>If this is used for a peer reviewed publication, please notify me via "christian.moestl [at] oeaw.ac.at" or "https://twitter.com/chrisoutofspace"<br>Number of events in ARRCAT: 1995<br>Targets: EARTH-L1, STEREO-A, STEREO-B, VENUS, MESSENGER, MARS, SATURN, ULYSSES, MSL, MAVEN, ROSETTA<br>The .sav file can be read directly in IDL ("restore" function) and python ("scipy.io.readsav").<br>See header file for more explanations.
DOI: 10.17632/mtz747tc43
title: Healthy Tomato Image Dataset

description: This is a high quality color image dataset of healthy tomatoes in the context of Bangladesh. This dataset can be a valuable resource for computer and agricultural researchers. It can be used to detect and predict various tomato diseases and for quality grading, sorting and crop monitoring. In addition to this, the dataset can serve as a valuable training ground for object detection, classification, image segmentation and analysis, and developing deep learning models.
DOI: 10.17632/rwzttj9pn2
title: SALL4 controls cell fate in response to DNA base composition. Pantier et al.

description: Mammalian genomes contain long domains with distinct average compositions of A/T versus G/C base pairs. In a screen for proteins that might interpret base composition by binding to AT-rich motifs, we identified the stem cell factor SALL4 which contains multiple zinc-fingers. Mutation of the domain responsible for AT binding drastically reduced SALL4 genome occupancy and prematurely up-regulated genes in proportion to their AT content. Inactivation of this single AT-binding zinc-finger cluster mimicked defects seen in Sall4-null cells, including precocious differentiation of embryonic stem cells and embryonic lethality in mice. In contrast, deletion of two other zinc-finger clusters was phenotypically neutral. Our data indicate that loss of pluripotency is triggered by down-regulation of SALL4, leading to de-repression of a set of AT-rich genes that promotes neuronal differentiation. We conclude that base composition is not merely a passive by-product of genome evolution, but constitutes a signal that aids control of cell fate. Python scripts and source code used for bioinformatic analyses, raw Western blot and microscopy images, as well as other types of unprocessed and processed data used to generate the figures are available here. "Figure 1.zip", "Figure 4.zip", "Figure 5.zip", "Figure 6.zip", "Figure S1.zip", "Figure S2.zip", "Figure S3.zip", "Figure S4.zip", "Figure S5.zip" and "Figure S6.zip" contain the raw western blot, microscopy images, processed and unprocessed data associated with figure panels in respective figures. "bioinformatics.zip" contains the respective ipynb (jupyter notebook) files for Figure 1, 2, 3, 6 and 7. Each notebook contains the source code to generate main+supplemental figure panels and the sub-folder "data" contain the processed data associated with the respective figure. "selex_scripts.zip" contains the Python scripts and all the necessary information to reproduce the analysis of HT-SELEX data. Raw and processed high-throughput sequencing data is deposited on Array Express, as described below. E-MTAB-7343 RNA-seq of WT, S4KO, ZFC4mut and ZFC4Δ ESCs E-MTAB-7655 RNA-seq of WT, S4KO, ZFC4mut and ZFC1-2Δ ESCs E-MTAB-9197 SALL4 ChIP-seq in WT, S4KO, ZFC4mut and ZFC1-2Δ ESCs E-MTAB-9198 Timecourse RNA-seq during differentiation (day 0, 2 and 5) of WT, S4KO, ZFC4mut and ZFC1-2Δ ESCs E-MTAB-9202 RNA-seq of S4KO cells carrying Sall4 cDNA or EGFP cDNA under a doxycycline inducible promoter E-MTAB-9236 HT-SELEX of recombinant C2H2 zinc-finger domains of SALL4 E-MTAB-9245 ATAC-seq in WT ESCs
DOI: 10.6084/m9.figshare.22678540.v1
title: Dataset for Multivariate Bitcoin Price Forecasting.

description: <em>The dataset was collected for the period spanning between 01/07/2019 and 31/12/2022.The historical Twitter volume were retrieved using ‘‘Bitcoin’’ (case insensitive) as the keyword from bitinfocharts.com. Google search volume was retrieved using library Gtrends. 2000 tweets per day using 4 times interval were crawled by employing Twitter API with the keyword “Bitcoin. The daily closing prices of Bitcoin, oil price, gold price, and U.S stock market indexes (S&P 500, NASDAQ, and Dow Jones Industrial Average) were collected using R libraries either Quantmod or Quandl. </em>
DOI: 10.6084/m9.figshare.27044752.v1
title: Forage maize yield and quality data in the NW of Spain (Galicia and Asturias)

description: Maize Cultivar characterization in the NW of Spain in Tabular data form., for 23 years in seven locations and corresponding to three different cultivars named 200,300,400. Production and quality variables: Dry Matter yield (kg MS/ha), Crude Protein yield (kg PB/ha) and Net energy for lactation yield (UFL/ha). Cultivar names first letter is "G" for Galicia locations and "A" for Asturias sites. <b>Variables</b><b>Description</b>Experimental sites (Altitude, m)Asturias: Barcia (25 m), Villaviciosa (10 m), Grado (50 m)Galicia: Ribadeo (43 m), Ordes (300 m), Deza (400 m), Sarria (520 m)Years2000-2022CultivarsAsturias: SE1-200, SE2-300, SE3-400Galicia: XU1-200, XU2-300, XU3-400<b>Weather data</b><br>Tmax (ºC)Average daily maximum air temperature from sowing to harvestTmin (ºC)Average daily minimum air temperature from sowing to harvestPrecipitation (mm)Total precipitation from sowing to harvestSolar radiation (MJ/m<sup>2</sup>)Total solar radiation from sowing to harvest<b>Soil data</b><sup><strong>2</strong></sup><br>pH-log([H<sup>+</sup>])SOC (%)Soil organic carbon (%)PAWC (mm)Plant available water capacity (mm)<b>Important dates</b><br>Sowing dates (Julian days)Asturias: 133=12/05, 136=15/05, 151=30/05Galicia: 136=15/05, 151=30/05, 167=15/06Anthesis dates (Julian days)<br>Harvest dates (Julian days)Asturias: 263=19/09, 267=23/09, 287=13/10Galicia: 250=06/09, 262=18/09, 267=23/09Cycle length (Days)Number of days from sowing to harvest<b>Response variables</b><br>kg DM/haWhole plant dry matter yield at harvestUFL/haWhole plant net energy for lactation yield at harvestkg CP/haWhole plant crude protein yield at harvest<br>
DOI: 10.6084/m9.figshare.3799422.v1
title: 27f/1392r sheared soil amplicons for EMIRGE

description: We extracted DNA from 6 soils and used the 27f/1392r primer pair to amplify near full-length 16S rRNA genes. The amplicons were sheared using the Covaris M220 (Covaris, Woburn, MA) and gene libraries were prepared using TruSeq DNA LT library preparation kits (Illumina, San Diego, CA). Samples were pooled and sequenced on an Illumina MiSeq (2x300bp) at the University of Colorado Next Generation Sequencing Facility.<br>We used these raw sequences to re-assemble the near full length 16S rRNA amplicon using EMIRGE.
DOI: 10.6084/m9.figshare.5946463.v1
title: Buck Island - Covariate Stack

description: This collection of layers is a generated set of covariates produced by the ArcGIS extension BTM. The study area is Buck Island in the USVI.<br>
DOI: 10.17632/66jrrgpckz
title: Pickup and Delivery Problem with Electric Vehicles and Transfers

description: This data includes 360 instances that found from here and modified to include EVs: https://data.mendeley.com/datasets/w925jygjct/2
There are 10 more instances that generated based on 0.ins found at https://data.mendeley.com/datasets/pywzcgyzrv/2

Details are shared in the paper.
DOI: 10.17632/9k2xb94vpz
title: Early Diagnosis of Type 2 Diabetes Mellitus in Patients with Psoriasis: Construction of a Multifactorial Diagnostic Model

description: This dataset consists of FigS1, TableS1, and Supplementary appendix.
Fig S1. Proportion of Missing Data in Derivation Cohort
Table S1. TRIPOD Checklist Prediction Model Development
Supplementary appendix:Detailed description of the contents of the manuscripts
DOI: 10.17632/mcxv7d6xgk
title: Dataset on genetic variation and trait association in cheeseweed (Malva parviflora L.) genotypes for agronomic traits

description: Raw data
Measurements from marketable mature plants were used to collect data on seven agronomic parameters. For data collection, a total of 3 plants were chosen from each replication. The number of leaves was manually gathered and counted. The average of the plant height (cm), petiole length (cm), leaf length (cm), leaf breadth (cm), root length (cm), and plant weight (g) were computed.
The supplemental file "S1" contains the experiment's raw data. The ANOVA analysis results are shown in supplemental file "S2". The additional file "S3" contains the raw data for Table 1, Table 3, Table 4, Table 5, and Fig. 1 and Fig. 2. In the supplemental file "S4", the raw data for Table 2, Fig. 3, and Fig. 4 are displayed. The principal component analysis's analyzed data is shown in the supplemental file "S5". The genotype image is shown in the supplemental file "S6."
DOI: 10.6084/m9.figshare.10073012.v1
title: Demographic questionnaire and EPDS in English

description: This is the questionnaire used in the study of "predictive statistical model for the factor associated with prenatal depression among pregnant adolescents in Maha sarakham province, Thailand". The questionnaire consists of two part including demographic information and the Edinburgh Postnatal Depression Scale (EPDS). This file is English version of the questionnaire.<br>The published article can be found on http://dx.doi.org/10.12688/f1000research.21007.1