cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/122099
title: Gyrocompass data collected during research cruise EN570 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122102
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise EN571 using a Hawaii UHDAS instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7616927
title: Additional file 2: of Gene annotation errors are common in the mammalian mitochondrial genomes database

description: Table S2. Lengths of each gene and of the total for each of the 304 mammalian mitochondrial genomes analyzed. “CR” is the control region that normally contains a D-loop structure, with the number in this column being all nucleotides annotated as the control region (or a synonym such as “A + T-rich region” or “D-loop region”) or, if lacking such annotation, the total number of unassigned nucleotides reported between annotations of flanking tRNA genes. The absence of any reported sequence between trnP and trnF is represented by zero (0). Highlighting follows the scheme in Table S2 with grey here also representing cases where there is no CR sequence in the GenBank record. trnY for Aotus nancymaae, colored red here, is also in error for gene boundary errors. The numeral inparentheses indicates the number of species whose mitogenomes were analyzed in each order. (XLSX 77 kb)
DOI: 10.7284/122100
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN571 using a Furuno GP-90D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7616927.v1
title: Additional file 2: of Gene annotation errors are common in the mammalian mitochondrial genomes database

description: Table S2. Lengths of each gene and of the total for each of the 304 mammalian mitochondrial genomes analyzed. “CR” is the control region that normally contains a D-loop structure, with the number in this column being all nucleotides annotated as the control region (or a synonym such as “A + T-rich region” or “D-loop region”) or, if lacking such annotation, the total number of unassigned nucleotides reported between annotations of flanking tRNA genes. The absence of any reported sequence between trnP and trnF is represented by zero (0). Highlighting follows the scheme in Table S2 with grey here also representing cases where there is no CR sequence in the GenBank record. trnY for Aotus nancymaae, colored red here, is also in error for gene boundary errors. The numeral inparentheses indicates the number of species whose mitogenomes were analyzed in each order. (XLSX 77 kb)
DOI: 10.7284/122101
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN571 using a Northstar 952 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7616915
title: Additional file 1: of Gene annotation errors are common in the mammalian mitochondrial genomes database

description: Table S1. Analysis of gene arrangements of 304 mammalian mitochondrial genome. Gene arrangements of the mammalian species compared in this analysis as annotated at NCBI with Reference IDs shown for each. The numeral in parentheses indicates the number of species belonging to each group. Each gene is assigned a number 1â 37 at the top of the Table which is then used to describe the annotated gene arrangement for each species. Each gene is transcribed left-to-right as shown except for those with a minus (â ) symbol to indicate opposite orientation. The arrangement shared by all three monotreme and human mitochondrial genomes has long been inferred to be the ancestral condition for mammals. Highlighting indicates all deviations from that ancestral arrangement according to the NCBI sequence records, with green being confirmed by this work, red being errors of gene arrangement according to our analysis, brown being errors of gene boundary annotation according to our observation, orange being a failure to annotate a gene that we determined to be present, and gray being a gene missing wholly or in large part because the sequence is not present in the file. trnY for Aotus nancymaae, colored red here, is also in error for gene boundary errors. 1Extinct species. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.7616915.v1
title: Additional file 1: of Gene annotation errors are common in the mammalian mitochondrial genomes database

description: Table S1. Analysis of gene arrangements of 304 mammalian mitochondrial genome. Gene arrangements of the mammalian species compared in this analysis as annotated at NCBI with Reference IDs shown for each. The numeral in parentheses indicates the number of species belonging to each group. Each gene is assigned a number 1â 37 at the top of the Table which is then used to describe the annotated gene arrangement for each species. Each gene is transcribed left-to-right as shown except for those with a minus (â ) symbol to indicate opposite orientation. The arrangement shared by all three monotreme and human mitochondrial genomes has long been inferred to be the ancestral condition for mammals. Highlighting indicates all deviations from that ancestral arrangement according to the NCBI sequence records, with green being confirmed by this work, red being errors of gene arrangement according to our analysis, brown being errors of gene boundary annotation according to our observation, orange being a failure to annotate a gene that we determined to be present, and gray being a gene missing wholly or in large part because the sequence is not present in the file. trnY for Aotus nancymaae, colored red here, is also in error for gene boundary errors. 1Extinct species. (XLSX 62 kb)
DOI: 10.7284/122103
title: Gyrocompass data collected during research cruise EN571 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7616891
title: Additional file 1: of Characterization of G-protein coupled receptors from the blackback land crab Gecarcinus lateralis Y organ transcriptome over the molt cycle

description: Table S1. List of curated GPCRs using phylogenetic study and Blast search analysis. GPCRs subgroup clasification was defined using Pfam database and reference list. (XLSX 159 kb)
DOI: 10.6084/m9.figshare.7616897
title: Additional file 2: of Characterization of G-protein coupled receptors from the blackback land crab Gecarcinus lateralis Y organ transcriptome over the molt cycle

description: Table S2. Statistical analysis of defined GPCRs using empirical analysis of DGE and false discovery rate method. (XLSX 80 kb)
DOI: 10.7284/122104
title: Gyrocompass data collected during research cruise EN571 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7616897.v1
title: Additional file 2: of Characterization of G-protein coupled receptors from the blackback land crab Gecarcinus lateralis Y organ transcriptome over the molt cycle

description: Table S2. Statistical analysis of defined GPCRs using empirical analysis of DGE and false discovery rate method. (XLSX 80 kb)
DOI: 10.7284/122108
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise EN572 using a Hawaii UHDAS instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7616882
title: MOESM2 of What is the effectiveness of using conspecific or heterospecific acoustic playbacks for the attraction of animals for wildlife management? A systematic review protocol

description: Additional file 2. List of grey literature sources to be used in the review.
DOI: 10.6084/m9.figshare.7616891.v1
title: Additional file 1: of Characterization of G-protein coupled receptors from the blackback land crab Gecarcinus lateralis Y organ transcriptome over the molt cycle

description: Table S1. List of curated GPCRs using phylogenetic study and Blast search analysis. GPCRs subgroup clasification was defined using Pfam database and reference list. (XLSX 159 kb)
DOI: 10.6084/m9.figshare.7616882.v1
title: MOESM2 of What is the effectiveness of using conspecific or heterospecific acoustic playbacks for the attraction of animals for wildlife management? A systematic review protocol

description: Additional file 2. List of grey literature sources to be used in the review.
DOI: 10.7284/122107
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise EN572 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7616837
title: Behavioral responses of Grauer's gorillas around the corpse of an extra-group silverback

description: Affiliative, investigative, and agonistic behaviors around the corpse of an extra-group silverback Grauer's gorilla
DOI: 10.6084/m9.figshare.7616702
title: A soil fungal metacommunity perspective reveals stronger and more localised interactions above the tree line of an alpine/subalpine ecotone

description: The data are included in three files:1) A spreadsheet containing sample data and variable descriptors (geographic coordinates, abiotic properties, vegetation coverage, fungal community profiles)2) a fasta file containing representative DNA sequences for each fungal operational taxonomic unit3) a newick format file containing a phylogenetic tree reconstructed from representative DNA sequences<br><br>Methodologies can be found in the associated publication (details to be provided here when available).
DOI: 10.6084/m9.figshare.7616714
title: Behavioral responses of mountain gorillas around the corpse of a dominant group adult female, Tuck

description: Affiliative, investigative, and agonistic behaviors around the corpse of a dominant group adult female mountain gorilla
DOI: 10.6084/m9.figshare.7616837.v2
title: Behavioral responses of Grauer's gorillas around the corpse of an extra-group silverback

description: Affiliative, investigative, and agonistic behaviors around the corpse of an extra-group silverback Grauer's gorilla
DOI: 10.7284/122105
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN572 using a Furuno GP-90D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7616630
title: Raw Data- IC kit.csv

description: In this study, we evaluate the newly developed IC test kit for Norovirus and Rotavirus detection (IP-Noro/Rota; ImmunoProbe Co., Ltd., Saitama, Japan) in 100 stool samples collected from pediatric patients with acute gastroenteritis (severe dehydration, abdominal pain and vomiting) in Bangladesh during January to June 2015 after getting a written consent from the patients’ guardian.
DOI: 10.6084/m9.figshare.7616633.v1
title: Behavioral responses of mountain gorillas to the corpse of a dominant group silverback, Titus

description: Affiliative, investigative, and agonistic behaviors around the corpse of a dominant group silverback mountain gorilla
DOI: 10.6084/m9.figshare.7616714.v1
title: Behavioral responses of mountain gorillas to the corpse of a dominant group adult female, Tuck

description: Affiliative, investigative, and agonistic behaviors around the corpse of a dominant group adult female mountain gorilla
DOI: 10.6084/m9.figshare.7616837.v1
title: Behavioral responses of Grauer's gorillas around the corpse of an extra-group silverback

description: Affiliative, investigative, and agonistic behaviors around the corpse of an extra-group silverback Grauer's gorilla
DOI: 10.6084/m9.figshare.7616630.v1
title: Raw Data- IC kit.csv

description: In this study, we evaluate the newly developed IC test kit for Norovirus and Rotavirus detection (IP-Noro/Rota; ImmunoProbe Co., Ltd., Saitama, Japan) in 100 stool samples collected from pediatric patients with acute gastroenteritis (severe dehydration, abdominal pain and vomiting) in Bangladesh during January to June 2015 after getting a written consent from the patients’ guardian.
DOI: 10.6084/m9.figshare.7616633
title: Behavioral responses of mountain gorillas around the corpse of a dominant group silverback, Titus

description: Affiliative, investigative, and agonistic behaviors around the corpse of a dominant group silverback mountain gorilla
DOI: 10.6084/m9.figshare.7616714.v2
title: Behavioral responses of mountain gorillas around the corpse of a dominant group adult female, Tuck

description: Affiliative, investigative, and agonistic behaviors around the corpse of a dominant group adult female mountain gorilla
DOI: 10.6084/m9.figshare.7616714.v3
title: Behavioral responses of mountain gorillas around the corpse of a dominant group adult female, Tuck

description: Affiliative, investigative, and agonistic behaviors around the corpse of a dominant group adult female mountain gorilla
DOI: 10.7284/122106
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN572 using a Northstar 952 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.23641/asha.7616555
title: Effects of acoustic variation on amusia (Shao et al., 2019)

description: <b>Purpose: </b>Congenital amusia is an inborn neurogenetic disorder of fine-grained pitch processing. This study attempted to pinpoint the impairment mechanism of speech processing in tonal language speakers with amusia. We designed a series of perception tasks aiming at selectively probing low-level pitch processing and relatively high-level phonological processing of lexical tones, with an aim to illuminate the deficiency mechanism underlying tone perception in amusia.<b>Method: </b>Sixteen Cantonese-speaking amusics and 16 matched controls were tested on the effects of acoustic (talker/syllable) variations on the identification and discrimination of Cantonese tones in two conditions. In the low-variation condition, tones were always associated with the same talker or syllable; in the high-variation condition, tones were associated with either different talkers (with the syllable controlled) or different syllables (with the talker controlled).<b>Results: </b>Largely similar results were obtained in talker and syllable variation conditions. Amusics exhibited overall poorer performance than controls in tone identification. Although amusics also demonstrated poorer performance in tone discrimination, the group difference was more obvious in low-variation conditions, where more acoustic constancy was provided. Besides, controls exhibited a greater increase in discrimination sensitivity from high- to low-variation conditions, implying a stronger benefit of acoustic constancy.<b>Conclusions: </b>The findings suggested that amusics’ lexical tone perception abilities, in terms of both low-level pitch processing and high-level phonological processing, as measured in low- and high-variation conditions, are impaired. Importantly, amusics were more impaired in taking advantage of low acoustic variation contexts and thus less efficiently sharpened their perception of tones when perceptual anchors in talker/syllable were provided, suggesting a possible “anchoring deficit” in congenital amusia.<br><b>Supplemental Material S1.</b> Percentage of correct and incorrect trials in each condition.<br><b>Supplemental Material S2.</b> Reaction time (RT) results separated by correct and incorrect trials. <br>Shao, J., Lau, R. Y. M., Tang, P. O. C., & Zhang, C. (2019). The effects of acoustic variation on the perception of lexical tone in Cantonese-speaking congenital amusics. <i>Journal of Speech, Language, and Hearing Research.</i> Advance online publication. https://doi.org/10.1044/2018_JSLHR-H-17-0483
DOI: 10.6084/m9.figshare.7616546
title: Supplemental Material for Jin et al., 2019

description: Figure S1 contains the agarose gel electrophoresis analysis of total RNA from P. vulgaris; Figure S2 contains sequencing quality estimation for the six samples; Figure S3 contains summary of genes annotated to Swiss-Prot, TrEMBL, and Pfam; Figure S4 contains summary of Gene Ontology annotation for all UniGenes; Figure S5 contains the sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) analysis of the recombinant of PvTPS14 and PvTPS16; Table S1 contains the quality of total RNA from P. vulgaris; Table S2 contains summary of sequencing reads; Table S3 contains stats for all de novo assembled transcript isotig; Table S4 contains annotated unigenes involved in terpenoid biosynthesis; Table S5 contains genes information in terpenoid biosynthesis in P. vulgaris; Table S6 contains list of DiTPS from Lamiaceae involved in this paper; Table S7 contains primers used in this study.<b></b><i></i><sub></sub><sup></sup><br>
DOI: 10.7284/122109
title: Gyrocompass data collected during research cruise EN572 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.23641/asha.7616555.v1
title: Effects of acoustic variation on amusia (Shao et al., 2019)

description: <b>Purpose: </b>Congenital amusia is an inborn neurogenetic disorder of fine-grained pitch processing. This study attempted to pinpoint the impairment mechanism of speech processing in tonal language speakers with amusia. We designed a series of perception tasks aiming at selectively probing low-level pitch processing and relatively high-level phonological processing of lexical tones, with an aim to illuminate the deficiency mechanism underlying tone perception in amusia.<b>Method: </b>Sixteen Cantonese-speaking amusics and 16 matched controls were tested on the effects of acoustic (talker/syllable) variations on the identification and discrimination of Cantonese tones in two conditions. In the low-variation condition, tones were always associated with the same talker or syllable; in the high-variation condition, tones were associated with either different talkers (with the syllable controlled) or different syllables (with the talker controlled).<b>Results: </b>Largely similar results were obtained in talker and syllable variation conditions. Amusics exhibited overall poorer performance than controls in tone identification. Although amusics also demonstrated poorer performance in tone discrimination, the group difference was more obvious in low-variation conditions, where more acoustic constancy was provided. Besides, controls exhibited a greater increase in discrimination sensitivity from high- to low-variation conditions, implying a stronger benefit of acoustic constancy.<b>Conclusions: </b>The findings suggested that amusics’ lexical tone perception abilities, in terms of both low-level pitch processing and high-level phonological processing, as measured in low- and high-variation conditions, are impaired. Importantly, amusics were more impaired in taking advantage of low acoustic variation contexts and thus less efficiently sharpened their perception of tones when perceptual anchors in talker/syllable were provided, suggesting a possible “anchoring deficit” in congenital amusia.<br><b>Supplemental Material S1.</b> Percentage of correct and incorrect trials in each condition.<br><b>Supplemental Material S2.</b> Reaction time (RT) results separated by correct and incorrect trials. <br>Shao, J., Lau, R. Y. M., Tang, P. O. C., & Zhang, C. (2019). The effects of acoustic variation on the perception of lexical tone in Cantonese-speaking congenital amusics. <i>Journal of Speech, Language, and Hearing Research.</i> Advance online publication. https://doi.org/10.1044/2018_JSLHR-H-17-0483
DOI: 10.7284/122110
title: Gyrocompass data collected during research cruise EN572 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7616546.v1
title: Transcriptomic Insight into Terpenoid Biosynthesis in the Medicinal Plant Prunella vulgaris

description: Figure S1: The agarose gel electrophoresis analysis of total RNA from <i>P. vulgaris</i>; Figure S2: Sequencing quality estimation for the six samples; Figure S3: Summary of genes annotated to Swiss-Prot, TrEMBL, and Pfam; Figure S4: Summary of Gene Ontology annotation for all UniGenes; Figure S5: The sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) analysis of the recombinant of <i>Pv</i>TPS14 and <i>Pv</i>TPS16; Table S1. The quality of total RNA from<i> P. vulgaris</i>; Table S2: Summary of sequencing reads; Table S3: Stats for all de novo assembled transcript isotig; Table S4: Annotated unigenes involved in terpenoid biosynthesis; Table S5: Genes information in terpenoid biosynthesis in<i> P. vulgaris</i>; Table S6: List of DiTPS from Lamiaceae involved in this paper; Table S7: Primers used in this study.
DOI: 10.7284/122114
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise EN573 using a Hawaii UHDAS instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7616546.v3
title: Supplemental Material for Jin et al., 2019

description: Figure S1 contains the agarose gel electrophoresis analysis of total RNA from P. vulgaris; Figure S2 contains sequencing quality estimation for the six samples; Figure S3 contains summary of genes annotated to Swiss-Prot, TrEMBL, and Pfam; Figure S4 contains summary of Gene Ontology annotation for all UniGenes; Figure S5 contains the sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) analysis of the recombinant of PvTPS14 and PvTPS16; Table S1 contains the quality of total RNA from P. vulgaris; Table S2 contains summary of sequencing reads; Table S3 contains stats for all de novo assembled transcript isotig; Table S4 contains annotated unigenes involved in terpenoid biosynthesis; Table S5 contains genes information in terpenoid biosynthesis in P. vulgaris; Table S6 contains list of DiTPS from Lamiaceae involved in this paper; Table S7 contains primers used in this study.<b></b><i></i><sub></sub><sup></sup><br>
DOI: 10.6084/m9.figshare.7616546.v2
title: Supplemental Material for Jin et al., 2019

description: Figure S1: The agarose gel electrophoresis analysis of total RNA from <i>P. vulgaris</i>; Figure S2: Sequencing quality estimation for the six samples; Figure S3: Summary of genes annotated to Swiss-Prot, TrEMBL, and Pfam; Figure S4: Summary of Gene Ontology annotation for all UniGenes; Figure S5: The sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) analysis of the recombinant of <i>Pv</i>TPS14 and <i>Pv</i>TPS16; Table S1. The quality of total RNA from<i> P. vulgaris</i>; Table S2: Summary of sequencing reads; Table S3: Stats for all de novo assembled transcript isotig; Table S4: Annotated unigenes involved in terpenoid biosynthesis; Table S5: Genes information in terpenoid biosynthesis in<i> P. vulgaris</i>; Table S6: List of DiTPS from Lamiaceae involved in this paper; Table S7: Primers used in this study.
DOI: 10.7284/122113
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise EN573 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122111
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN573 using a Furuno GP-90D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition