cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3555162
title: Supplement 1. Artificial and real data sets, and R functions and scripts to perform canonical correspondence analysis using fuzzy-coded explanatory variables, with adjustment of the variance explained.

description: File List artificial.csv (md5: 2dcf93451985a5205c88df0f24dcc709) - abundance data for 300 samples on 5 species (A, B, C, D and E) and environmental data on 2 variables (X and Y). <br> BarentsFish.csv (md5: e61ef26ef9a7fec70f831535587a5966) - fish abundance data set ‘BarentsFish’, on 89 samples from the Barents Sea, along with longitude and latitude positions, depth and temperature<br> fuzzy.tri.R (md5: 0bf5013ae24752cd27ed48e585a53870) - R function fuzzy.tri for fuzzy coding into any number of categories using triangular membership functions<br> CCA.R (md5: c6b9a3207e7e3405545a673b5a536daa) - R function CCA for basic computations of a CCA<br> fuzzyscript.R (md5: 4ce442235d7d6e107ff498fc62cc1789) - R script illustrating several analyses from this report (see description below) Description The two data files used in the report are given in csv format. Two R functions are provided: (i) to fuzzy code continuous variables into a chosen number of fuzzy categories, or into categories based on user-defined hinge points: (ii) to compute a basic canonical correspondence analysis, using the singular-value decomposition, with output of the sample (row) principal coordinates and the variable (column) contribution coordinates, as well as parts of constrained and unconstrained inertia. This function is useful for computing the adjusted percentage of variance explained (see R script next). Finally an R script is provided illustrating the following analyses: (a) the computation of the adjusted <i>R</i><sup>2</sup> values in CCA by the permutation procedure proposed by Peres-Neto et al. (2006), (b) the conversion of continuous environmental variables (including spatial ones) into fuzzy-coded variables, and (c) plotting the results of the ‘BarentsFish’ analysis.<br> <br> Reference: Peres-Neto, P. R., P. Legendre, S. Dray, and D. Borcard. 2006. Partitioning of species data matrices: estimation and comparison of fractions. Ecology 87:2614–2625.
DOI: 10.6084/m9.figshare.3555159
title: Appendix A. Images of one of the three study sites (Mierasluoppal) with three levels of natural moth herbivory damage near Utsjoki, in the northernmost region of Finnish Lapland in 2009.

description: Images of one of the three study sites (Mierasluoppal) with three levels of natural moth herbivory damage near Utsjoki, in the northernmost region of Finnish Lapland in 2009.
DOI: 10.6084/m9.figshare.3555159.v1
title: Appendix A. Images of one of the three study sites (Mierasluoppal) with three levels of natural moth herbivory damage near Utsjoki, in the northernmost region of Finnish Lapland in 2009.

description: Images of one of the three study sites (Mierasluoppal) with three levels of natural moth herbivory damage near Utsjoki, in the northernmost region of Finnish Lapland in 2009.
DOI: 10.6084/m9.figshare.3555156
title: Appendix A. Color versions of Figs. 1–4.

description: Color versions of Figs. 1–4.
DOI: 10.6084/m9.figshare.3555156.v1
title: Appendix A. Color versions of Figs. 1–4.

description: Color versions of Figs. 1–4.
DOI: 10.6084/m9.figshare.3555153
title: Appendix B. Figures for all the data sets in the supplement including the plots of contributions of species to inertia and to chi-square vs. relative abundance, as well as the regular CA ordination and the corresponding contribution biplot, and two contribution plots from the CCA of the fish data set.

description: Figures for all the data sets in the supplement including the plots of contributions of species to inertia and to chi-square vs. relative abundance, as well as the regular CA ordination and the corresponding contribution biplot, and two contribution plots from the CCA of the fish data set.
DOI: 10.6084/m9.figshare.3555153.v1
title: Appendix B. Figures for all the data sets in the supplement including the plots of contributions of species to inertia and to chi-square vs. relative abundance, as well as the regular CA ordination and the corresponding contribution biplot, and two contribution plots from the CCA of the fish data set.

description: Figures for all the data sets in the supplement including the plots of contributions of species to inertia and to chi-square vs. relative abundance, as well as the regular CA ordination and the corresponding contribution biplot, and two contribution plots from the CCA of the fish data set.
DOI: 10.6084/m9.figshare.3555150
title: Supplement 1. The data sets as well as the R code to perform a contribution biplot in correspondence analysis.

description: File List all_files.zip (md5: 05899eadd594e72909c652856b0255fa)<br> benthos.csv (md5: 3967c416398c06a5a1c37ee4213ed601)<br> barents.csv (md5: 4784e8a75f12c8d54c4e75972e5e45ff)<br> macro.csv (md5: ec932c53204636c4d9bc0eda978b4161)<br> seashore.csv (md5: d51a0a57aed6c42ed903280c8ac3a1d0)<br> texel.csv (md5: f06123b443e088d941dae5c8709be649)<br> CAbiplot.R (md5: 92afeea2ed19440632b3dac5c8a1b069) Description all_files.zip is an archive containing all data and code described below (6 files). benthos.csv is a comma-separated text file containing the 'benthos' dataset used in the main body of the report. Column definitions are: 1. station id: Sx for 11 polluted stations, Rx for 2 reference stations<br> 2–93. abundances of 92 benthic species barents.csv is a comma-separated text file containing the 'barents' dataset. Column definitions are: 1. benthic species id (abbreviated) - 446 species<br> 2–11. abundances at 10 sampling sites macro.csv is a comma-separated text file containing the 'macro' dataset. Column definitions are: 1. sample id - 40 samples<br> 2–198. abundances of macro-invertebrates from two Dutch streams seashore.csv is a comma-separated text file containing the 'seashore' dataset. Column definitions are: 1. sample id - 126 samples<br> 2–69. abundances of vegetation of rising seashore in Stockholm archipelago - 68 species texel.csv is a comma-separated text file containing the 'texel' dataset. Column definitions are: 1. sample id - 285 samples<br> 2–222. vegetation on coastal sand dune area on Texel island - 221 species<br> <i>Note</i>: to align with the original publication, samples with zero abundances have to be eliminated, as well as species that have a single abundance of 1, to give a table with 209 samples and 209 species. The data set 'fish' is not available for release at the moment. CAbiplot.R is an R script file to produce a contribution biplot in correspondence analysis. This script assumes that the CA package is downloaded from CRAN. The data set should be in the working directory of R when running this code.
DOI: 10.6084/m9.figshare.3555150.v1
title: Supplement 1. The data sets as well as the R code to perform a contribution biplot in correspondence analysis.

description: File List all_files.zip (md5: 05899eadd594e72909c652856b0255fa)<br> benthos.csv (md5: 3967c416398c06a5a1c37ee4213ed601)<br> barents.csv (md5: 4784e8a75f12c8d54c4e75972e5e45ff)<br> macro.csv (md5: ec932c53204636c4d9bc0eda978b4161)<br> seashore.csv (md5: d51a0a57aed6c42ed903280c8ac3a1d0)<br> texel.csv (md5: f06123b443e088d941dae5c8709be649)<br> CAbiplot.R (md5: 92afeea2ed19440632b3dac5c8a1b069) Description all_files.zip is an archive containing all data and code described below (6 files). benthos.csv is a comma-separated text file containing the 'benthos' dataset used in the main body of the report. Column definitions are: 1. station id: Sx for 11 polluted stations, Rx for 2 reference stations<br> 2–93. abundances of 92 benthic species barents.csv is a comma-separated text file containing the 'barents' dataset. Column definitions are: 1. benthic species id (abbreviated) - 446 species<br> 2–11. abundances at 10 sampling sites macro.csv is a comma-separated text file containing the 'macro' dataset. Column definitions are: 1. sample id - 40 samples<br> 2–198. abundances of macro-invertebrates from two Dutch streams seashore.csv is a comma-separated text file containing the 'seashore' dataset. Column definitions are: 1. sample id - 126 samples<br> 2–69. abundances of vegetation of rising seashore in Stockholm archipelago - 68 species texel.csv is a comma-separated text file containing the 'texel' dataset. Column definitions are: 1. sample id - 285 samples<br> 2–222. vegetation on coastal sand dune area on Texel island - 221 species<br> <i>Note</i>: to align with the original publication, samples with zero abundances have to be eliminated, as well as species that have a single abundance of 1, to give a table with 209 samples and 209 species. The data set 'fish' is not available for release at the moment. CAbiplot.R is an R script file to produce a contribution biplot in correspondence analysis. This script assumes that the CA package is downloaded from CRAN. The data set should be in the working directory of R when running this code.
DOI: 10.6084/m9.figshare.3555147
title: Appendix A. Two tables of competing model structures of detection probability (p) of adult and first-year wheatears.

description: Two tables of competing model structures of detection probability (p) of adult and first-year wheatears.
DOI: 10.6084/m9.figshare.3555147.v1
title: Appendix A. Two tables of competing model structures of detection probability (p) of adult and first-year wheatears.

description: Two tables of competing model structures of detection probability (p) of adult and first-year wheatears.
DOI: 10.6084/m9.figshare.3555144
title: Appendix B. Two tables of model averaged survival estimates of adult and first-year wheatears.

description: Two tables of model averaged survival estimates of adult and first-year wheatears.
DOI: 10.6084/m9.figshare.3555144.v1
title: Appendix B. Two tables of model averaged survival estimates of adult and first-year wheatears.

description: Two tables of model averaged survival estimates of adult and first-year wheatears.
DOI: 10.6084/m9.figshare.3555141
title: Appendix A. Modeling the effect of age at first breeding.

description: Modeling the effect of age at first breeding.
DOI: 10.6084/m9.figshare.3555141.v1
title: Appendix A. Modeling the effect of age at first breeding.

description: Modeling the effect of age at first breeding.
DOI: 10.6084/m9.figshare.3555138
title: Appendix B. Description of the threshold methodology used to identify ageing patterns in all life-history traits and of the model selection procedure.

description: Description of the threshold methodology used to identify ageing patterns in all life-history traits and of the model selection procedure.
DOI: 10.6084/m9.figshare.3555138.v1
title: Appendix B. Description of the threshold methodology used to identify ageing patterns in all life-history traits and of the model selection procedure.

description: Description of the threshold methodology used to identify ageing patterns in all life-history traits and of the model selection procedure.
DOI: 10.6084/m9.figshare.3555135
title: Appendix C. Estimating age-specific temporal variances.

description: Estimating age-specific temporal variances.
DOI: 10.6084/m9.figshare.3555135.v1
title: Appendix C. Estimating age-specific temporal variances.

description: Estimating age-specific temporal variances.
DOI: 10.6084/m9.figshare.3555132
title: Appendix D. Description of the seven climatic and fisheries covariates used to test for a differential impact of environmental variations with age.

description: Description of the seven climatic and fisheries covariates used to test for a differential impact of environmental variations with age.
DOI: 10.6084/m9.figshare.3555132.v1
title: Appendix D. Description of the seven climatic and fisheries covariates used to test for a differential impact of environmental variations with age.

description: Description of the seven climatic and fisheries covariates used to test for a differential impact of environmental variations with age.
DOI: 10.6084/m9.figshare.3555129
title: Appendix E. Results of the multi-model inference procedure for detection probability of Black-browed Albatrosses at Kerguelen from 1968 to 2010.

description: Results of the multi-model inference procedure for detection probability of Black-browed Albatrosses at Kerguelen from 1968 to 2010.
DOI: 10.6084/m9.figshare.3555129.v1
title: Appendix E. Results of the multi-model inference procedure for detection probability of Black-browed Albatrosses at Kerguelen from 1968 to 2010.

description: Results of the multi-model inference procedure for detection probability of Black-browed Albatrosses at Kerguelen from 1968 to 2010.
DOI: 10.6084/m9.figshare.3555126
title: Appendix F. Results of the multi-model inference procedure for breeding probability of Black-browed Albatrosses at Kerguelen from 1968 to 2010.

description: Results of the multi-model inference procedure for breeding probability of Black-browed Albatrosses at Kerguelen from 1968 to 2010.
DOI: 10.6084/m9.figshare.3555126.v1
title: Appendix F. Results of the multi-model inference procedure for breeding probability of Black-browed Albatrosses at Kerguelen from 1968 to 2010.

description: Results of the multi-model inference procedure for breeding probability of Black-browed Albatrosses at Kerguelen from 1968 to 2010.
DOI: 10.6084/m9.figshare.3555123
title: Appendix G. Results of the multi-model inference procedure used to select the best model structure on breeding success probability of Black-browed Albatrosses at Kerguelen from 1968 to 2010.

description: Results of the multi-model inference procedure used to select the best model structure on breeding success probability of Black-browed Albatrosses at Kerguelen from 1968 to 2010.
DOI: 10.6084/m9.figshare.3555123.v1
title: Appendix G. Results of the multi-model inference procedure used to select the best model structure on breeding success probability of Black-browed Albatrosses at Kerguelen from 1968 to 2010.

description: Results of the multi-model inference procedure used to select the best model structure on breeding success probability of Black-browed Albatrosses at Kerguelen from 1968 to 2010.
DOI: 10.6084/m9.figshare.3555120
title: Appendix H. Results of the multi-model inference procedure used to select the best model structure on stage at reproductive failure of Black-browed Albatrosses at Kerguelen from 1968 to 2010.

description: Results of the multi-model inference procedure used to select the best model structure on stage at reproductive failure of Black-browed Albatrosses at Kerguelen from 1968 to 2010.
DOI: 10.6084/m9.figshare.3555120.v1
title: Appendix H. Results of the multi-model inference procedure used to select the best model structure on stage at reproductive failure of Black-browed Albatrosses at Kerguelen from 1968 to 2010.

description: Results of the multi-model inference procedure used to select the best model structure on stage at reproductive failure of Black-browed Albatrosses at Kerguelen from 1968 to 2010.
DOI: 10.6084/m9.figshare.3555117
title: Appendix I. Results of the multi-model inference procedure used to select the best model structure on chick body condition at fledging of Black-browed Albatrosses at Kerguelen from 1968 to 2010.

description: Results of the multi-model inference procedure used to select the best model structure on chick body condition at fledging of Black-browed Albatrosses at Kerguelen from 1968 to 2010.
DOI: 10.6084/m9.figshare.3555117.v1
title: Appendix I. Results of the multi-model inference procedure used to select the best model structure on chick body condition at fledging of Black-browed Albatrosses at Kerguelen from 1968 to 2010.

description: Results of the multi-model inference procedure used to select the best model structure on chick body condition at fledging of Black-browed Albatrosses at Kerguelen from 1968 to 2010.
DOI: 10.6084/m9.figshare.3555114
title: RVF Paper Adjacency List

description: This repository contains two types of data. First type provides seven adjacency lists for the networks topologies used in the simulation. Second type includes all the MATLAB files needed to run GEMFsim. For more info on GEMFsim please see https://arxiv.org/abs/1604.02175.
DOI: 10.6084/m9.figshare.3555114.v1
title: RVF Paper Adjacency List

description: This repository contains two types of data. First type provides seven adjacency lists for the networks topologies used in the simulation. Second type includes all the MATLAB files needed to run GEMFsim. For more info on GEMFsim please see https://arxiv.org/abs/1604.02175.
DOI: 10.6084/m9.figshare.3555111
title: Appendix J. Results of the multi-model inference procedure used to select the best model structure on culmen length of chicks of Black-browed Albatrosses at Kerguelen from 1968 to 2010.

description: Results of the multi-model inference procedure used to select the best model structure on culmen length of chicks of Black-browed Albatrosses at Kerguelen from 1968 to 2010.
DOI: 10.6084/m9.figshare.3555111.v1
title: Appendix J. Results of the multi-model inference procedure used to select the best model structure on culmen length of chicks of Black-browed Albatrosses at Kerguelen from 1968 to 2010.

description: Results of the multi-model inference procedure used to select the best model structure on culmen length of chicks of Black-browed Albatrosses at Kerguelen from 1968 to 2010.
DOI: 10.6084/m9.figshare.3555108
title: Appendix K. Testing for the effects of climatic and fisheries covariates on breeding success of Black-browed Albatrosses at Kerguelen from 1968 to 2009.

description: Testing for the effects of climatic and fisheries covariates on breeding success of Black-browed Albatrosses at Kerguelen from 1968 to 2009.
DOI: 10.6084/m9.figshare.3555108.v1
title: Appendix K. Testing for the effects of climatic and fisheries covariates on breeding success of Black-browed Albatrosses at Kerguelen from 1968 to 2009.

description: Testing for the effects of climatic and fisheries covariates on breeding success of Black-browed Albatrosses at Kerguelen from 1968 to 2009.
DOI: 10.6084/m9.figshare.3555105
title: Appendix L. Testing for the effects of climatic and fisheries covariates on chick body condition at fledging of Black-browed Albatrosses at Kerguelen from 1968 to 2009.

description: Testing for the effects of climatic and fisheries covariates on chick body condition at fledging of Black-browed Albatrosses at Kerguelen from 1968 to 2009.
DOI: 10.6084/m9.figshare.3555105.v1
title: Appendix L. Testing for the effects of climatic and fisheries covariates on chick body condition at fledging of Black-browed Albatrosses at Kerguelen from 1968 to 2009.

description: Testing for the effects of climatic and fisheries covariates on chick body condition at fledging of Black-browed Albatrosses at Kerguelen from 1968 to 2009.
DOI: 10.6084/m9.figshare.3555102
title: Appendix A. Preliminary analysis of data using generalized linear models (GLM) and generalized additive models (GAM) to identify nonlinear effects.

description: Preliminary analysis of data using generalized linear models (GLM) and generalized additive models (GAM) to identify nonlinear effects.
DOI: 10.6084/m9.figshare.3555102.v1
title: Appendix A. Preliminary analysis of data using generalized linear models (GLM) and generalized additive models (GAM) to identify nonlinear effects.

description: Preliminary analysis of data using generalized linear models (GLM) and generalized additive models (GAM) to identify nonlinear effects.
DOI: 10.6084/m9.figshare.3555099
title: Appendix A. Results of previous investigations of dung beetle species' trait correlates of response to the fragmentation or modification of moist tropical forests, using non-phylogenetically corrected analyses.

description: Results of previous investigations of dung beetle species' trait correlates of response to the fragmentation or modification of moist tropical forests, using non-phylogenetically corrected analyses.
DOI: 10.6084/m9.figshare.3555099.v1
title: Appendix A. Results of previous investigations of dung beetle species' trait correlates of response to the fragmentation or modification of moist tropical forests, using non-phylogenetically corrected analyses.

description: Results of previous investigations of dung beetle species' trait correlates of response to the fragmentation or modification of moist tropical forests, using non-phylogenetically corrected analyses.
DOI: 10.6084/m9.figshare.3555096
title: Appendix B. Description of the original data used in phylogenetically corrected comparative analyses to quantify the trait correlates of beetle population response to tropical forest degradation.

description: Description of the original data used in phylogenetically corrected comparative analyses to quantify the trait correlates of beetle population response to tropical forest degradation.
DOI: 10.6084/m9.figshare.3555096.v1
title: Appendix B. Description of the original data used in phylogenetically corrected comparative analyses to quantify the trait correlates of beetle population response to tropical forest degradation.

description: Description of the original data used in phylogenetically corrected comparative analyses to quantify the trait correlates of beetle population response to tropical forest degradation.
DOI: 10.6084/m9.figshare.3555093
title: Appendix C. Table of trait values for 265 species of Scarabaeine dung beetles incorporated into phylogenetically corrected comparative analyses to understand the trait correlates of population response to tropical forest degradation.

description: Table of trait values for 265 species of Scarabaeine dung beetles incorporated into phylogenetically corrected comparative analyses to understand the trait correlates of population response to tropical forest degradation.
DOI: 10.6084/m9.figshare.3555093.v1
title: Appendix C. Table of trait values for 265 species of Scarabaeine dung beetles incorporated into phylogenetically corrected comparative analyses to understand the trait correlates of population response to tropical forest degradation.

description: Table of trait values for 265 species of Scarabaeine dung beetles incorporated into phylogenetically corrected comparative analyses to understand the trait correlates of population response to tropical forest degradation.
DOI: 10.6084/m9.figshare.3555090
title: Appendix A. Details of thermally matched temperature loggers and field temperature surveys.

description: Details of thermally matched temperature loggers and field temperature surveys.
DOI: 10.6084/m9.figshare.3555090.v1
title: Appendix A. Details of thermally matched temperature loggers and field temperature surveys.

description: Details of thermally matched temperature loggers and field temperature surveys.
DOI: 10.6084/m9.figshare.3555087
title: Appendix B. Experimental design and laboratory tank system.

description: Experimental design and laboratory tank system.
DOI: 10.6084/m9.figshare.3555087.v1
title: Appendix B. Experimental design and laboratory tank system.

description: Experimental design and laboratory tank system.
DOI: 10.6084/m9.figshare.3555084
title: Appendix C. Results of all statistical tests.

description: Results of all statistical tests.
DOI: 10.6084/m9.figshare.3555084.v1
title: Appendix C. Results of all statistical tests.

description: Results of all statistical tests.
DOI: 10.6084/m9.figshare.3555081
title: Appendix A. Parameter estimations and maximum-likelihood values for experiments depicted in Figs. 2–7.

description: Parameter estimations and maximum-likelihood values for experiments depicted in Figs. 2–7.
DOI: 10.6084/m9.figshare.3555078
title: Appendix A. Illustration of the methodology used to index the sediment's micro-topography.

description: Illustration of the methodology used to index the sediment's micro-topography.
DOI: 10.6084/m9.figshare.3555078.v1
title: Appendix A. Illustration of the methodology used to index the sediment's micro-topography.

description: Illustration of the methodology used to index the sediment's micro-topography.