cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fka46q
title: Occurrence Download

description: A dataset containing 322 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Notiophilus borealis T.W.Harris, 1869",
 "Year is greater than or equal to 1950",
 {
 "or" : [
 "GadmGid is USA",
 "GadmGid is CAN",
 "GadmGid is MEX"
 ]
 }
 ]
}

 The dataset includes 322 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008721-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mjtmjm
title: Occurrence Download

description: A dataset containing 325249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Physocephala furcillata (Williston, 1882), Calephelis virginiensis (Gray, 1832), Ceratina strenua Smith, 1879, Argyronome laodice (Pallas, 1771), Melissodes subillatus LaBerge, 1961, Hebata planata (Ahmed, Samad & Naheed, 1981), Stegobium paniceum (Linnaeus, 1758), Physocephala sagittaria (Say, 1823), Ancistrocerus catskill (de Saussure, 1853), Idiomacromerus perplexus (Gahan, 1914), Systole geniculata Forster, 1861, Systole coriandri Gussakovsky, 1933, Lariophagus distinguendus (Förster, 1841), Pediobius foveolatus (Crawford, 1912), Alternaria geophila Dasz., Alternaria dauci (J.G.Kühn) J.W.Groves & Skolko, Edwardsiana smreczynskii Dworakowska, 1971, Cytospora corni Westend., Cheirospora botryospora (Mont.) Berk. & Broome, Diaporthe corni Fuckel, Pseudomassaria corni (Sowerby) Arx, Erythroneura rubrella McAtee, 1920, Probole nepiasaria (Walker, 1860), Caloptilia canadensisella (McDunnough, 1956), Hammerschmidtia rufa (Williston, 1882), Carterocephalus skada, Blera armillata (Osten Sacken, 1875), Eristalis cryptarum (Fabricius, 1794), Chrysocharis clarkae Yoshimoto, 1973, Altica corni Woods, 1918, Caloptilia cornusella (Ely, 1915), Temnostoma balyras (Walker, 1849), Temnostoma barberi Curran, 1939, Andrena miranda Smith, 1879, Osmia proxima Cresson, 1864, Bombylius mexicanus Wiedemann, 1821, Mallota posticata (Fabricius, 1805), Puccinia porphyrogenita M.A.Curtis, Drosophila suzukii (Matsumura, 1931), Meles anakuma Temminck, 1844, Martes melampus (Wagner, 1840), Edwardsiana diversa (Edwards, 1914), Martes martes (Linnaeus, 1758), Canis lupus Linnaeus, 1758, Arboridia agrillacea (Anufriev, 1969), Arboridia surstyli Cai & Xu, 2006, Arboridia suzukii (Matsumura, 1916), Spatalistis bifasciana (Hübner, 1787), Gyponana mali DeLong, 1942, Antispila metallella (Denis & Schiffermüller, 1775))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 325249 records from 1924 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008709-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/xg112-17z95
title: WT LP01 from Liu lab, Yale

description: Type four secretion system, T4SS
description: <strong>Tilt Series Date:</strong> 2016-11-28</p>
<strong>Data Taken By:</strong> Yuxi Liu</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-51.0°, 51.0°), step: 3°, constant angular increment, dosage: 50.0 eV/Å²,  defocus: -5.0 μm,  magnification: 15500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
<strong>Collaborators and Roles:</strong> Data collected by Bo Hu in Jun Liu lab at Yale from their Polara. Partial WT strain data set. Primary literature:  doi: 10.1038/s41564-018-0165-z</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-520/rawdata/</p>T4SSWTminiNov21C023_driftcorr.mrc,  Tilt Series (Pixel Size 0.25 nm), 2.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-520/rawdata/T4SSWTminiNov21C023_driftcorr.mrc"
        > <i class="download icon"></i> Download </a></p>

        T4SSWTminiNov21C023_driftcorr.rec,  Reconstruction (Pixel Size 1.0 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-520/3dimage_105240/T4SSWTminiNov21C023_driftcorr.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/xanjk-7a933
title: pED208_6um

description: t4ss in E.colli with F pilus
description: <strong>Tilt Series Date:</strong> 2015-02-11</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> LB o/n 37C</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-02-11-53/rawdata/</p>pED-6um-20019.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-02-11-53/rawdata/pED-6um-20019.mrc"
        > <i class="download icon"></i> Download </a></p>

        pED-6um-20019_full.rec,  Reconstruction (Pixel Size 2.0 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-02-11-53/3dimage_51811/pED-6um-20019_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/zbnmc-ewz53
title: WT LP01 from Liu lab, Yale

description: Type four secretion system, T4SS
description: <strong>Tilt Series Date:</strong> 2016-11-28</p>
<strong>Data Taken By:</strong> Yuxi Liu</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-51.0°, 51.0°), step: 3°, constant angular increment, dosage: 50.0 eV/Å²,  defocus: -5.0 μm,  magnification: 15500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
<strong>Collaborators and Roles:</strong> Data collected by Bo Hu in Jun Liu lab at Yale from their Polara. Partial WT strain data set. Primary literature:  doi: 10.1038/s41564-018-0165-z</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-170/rawdata/</p>T4SSWTDec12A015_driftcorr.mrc,  Tilt Series (Pixel Size 0.25 nm), 2.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-170/rawdata/T4SSWTDec12A015_driftcorr.mrc"
        > <i class="download icon"></i> Download </a></p>

        T4SSWTDec12A015_driftcorr.rec,  Reconstruction (Pixel Size 1.0 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-170/3dimage_104943/T4SSWTDec12A015_driftcorr.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.5281/zenodo.16947113
title: Bohemian Strap

description: Elevate your style effortlessly with the bohemian strap from Buckle It Up Store. Designed for versatility, this strap transitions seamlessly from casual daytime looks to chic evening ensembles. Crafted with attention to detail, it combines comfort and fashion, making it a must-have accessory for any wardrobe. Explore how the bohemian strap enhances your outfits with a unique, stylish touch that suits every occasion.
DOI: 10.5281/zenodo.16947114
title: Bohemian Strap

description: Elevate your style effortlessly with the bohemian strap from Buckle It Up Store. Designed for versatility, this strap transitions seamlessly from casual daytime looks to chic evening ensembles. Crafted with attention to detail, it combines comfort and fashion, making it a must-have accessory for any wardrobe. Explore how the bohemian strap enhances your outfits with a unique, stylish touch that suits every occasion.
DOI: 10.22002/by03c-td385
title: nanowire+doublepili mutant+Chemo

description: This sample is batch 2 collection. This is from double pili mutant run on a chemostat.Batch 1 collection was from WT grown in serum bottle
description: <strong>Tilt Series Date:</strong> 2015-04-12</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Moh, USC</p>
<strong>Sample Preparation:</strong> Went to USC and froze using manual vitrobot. Only 1 grid was good among 6 and cells were isolated so couldn't detect any nanowires so far</p>
  psa2015-04-12-11_slicer16431.jpg: chemoreceptor array
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-04-12-11/rawdata/</p>3_atlas_nanowires0010.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-04-12-11/rawdata/3_atlas_nanowires0010.mrc"
        > <i class="download icon"></i> Download </a></p>

        3_atlas_nanowires0010_full.rec,  Reconstruction (Pixel Size 1.92 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-04-12-11/3dimage_53876/3_atlas_nanowires0010_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/t2p74-g3m77
title: LBculture_wt

description: This is a LB culture of wt from a flask grown into stationary phase. The purpose was to to check that there are no nanowires  and nothing was seen in sem, and when we do cryo-em to ensure we see flagellum. This would ensure that flagellum can't be seen in sem. But we did see long wires in sem. Sahand opined that is because we grew them into stationary phase. I imaged these to capture nanowires since they were present in sem
description: <strong>Tilt Series Date:</strong> 2015-07-25</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Moh and Sahand</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Manual blotting Cu side glow discharged. Sample was put on opposite side and blotted. Similar to vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-07-25-9/rawdata/</p>lbculture_nanowirepresent_atlas10008.mrc,  Tilt Series (Pixel Size 0.48 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-07-25-9/rawdata/lbculture_nanowirepresent_atlas10008.mrc"
        > <i class="download icon"></i> Download </a></p>

        lbculture_nanowirepresent_atlas10008_full.rec,  Reconstruction (Pixel Size 1.92 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-07-25-9/3dimage_59505/lbculture_nanowirepresent_atlas10008_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/xfx30-1xm79
title: nanochemowt

description: This is my fourth attempt to grow Shewanella. This culture is wt grown at caltech in chemostat.Frozen here in vitrobot.
description: <strong>Tilt Series Date:</strong> 2015-06-02</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -7.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Moh and Sahand USC</p>
<strong>Sample Preparation:</strong> This sample was frozen after being in oxygen deficiency for 16h. Checked by SEM and had nanowires. Vitrobot freezing conditions 6s blot force, 3s blot time, 1s drain time, 4ul on grid.</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-06-02-6/rawdata/</p>nanochemo_atlas10017.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-06-02-6/rawdata/nanochemo_atlas10017.mrc"
        > <i class="download icon"></i> Download </a></p>

        nanochemo_atlas10017_part121_33.rec,  Reconstruction (Pixel Size 1.92 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-06-02-6/3dimage_57756/nanochemo_atlas10017_part121_33.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.wgmjhr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mormyrops intermedius)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045313-250811113504898/datasets/export for details.
DOI: 10.15468/dl.yy8z2p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argya aylmeri",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045310-250811113504898/datasets/export for details.
DOI: 10.22002/b8rz9-7ny90
title: WT LP01 from Liu lab, Yale

description: Type four secretion system, T4SS
description: <strong>Tilt Series Date:</strong> 2016-11-28</p>
<strong>Data Taken By:</strong> Yuxi Liu</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-51.0°, 51.0°), step: 3°, constant angular increment, dosage: 50.0 eV/Å²,  defocus: -5.0 μm,  magnification: 15500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
<strong>Collaborators and Roles:</strong> Data collected by Bo Hu in Jun Liu lab at Yale from their Polara. Partial WT strain data set. Primary literature:  doi: 10.1038/s41564-018-0165-z</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-432/rawdata/</p>T4SSWTminiNov18C020_driftcorr.mrc,  Tilt Series (Pixel Size 0.25 nm), 2.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-432/rawdata/T4SSWTminiNov18C020_driftcorr.mrc"
        > <i class="download icon"></i> Download </a></p>

        T4SSWTminiNov18C020_driftcorr.rec,  Reconstruction (Pixel Size 1.0 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-432/3dimage_105162/T4SSWTminiNov18C020_driftcorr.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/05jwg-sma85
title: pED208_pilated

description: E coli strain with plasmid pED208 overexpresses T4SS and F-like pili
description: <strong>Tilt Series Date:</strong> 2015-01-14</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Cells were obtained from Laura Frost</p>
<strong>Purification / Growth Conditions / Treatment:</strong> o/n liquid LB</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-01-14-49/rawdata/</p>pED208a0049.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-01-14-49/rawdata/pED208a0049.mrc"
        > <i class="download icon"></i> Download </a></p>

        pED208a0049_part121_6.rec,  Reconstruction (Pixel Size 2.0 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-01-14-49/3dimage_50673/pED208a0049_part121_6.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/qrasf-x6514
title: nanochemowt_2ndday

description: This is my fourth attempt to grow Shewanella. This culture is wt grown at caltech in chemostat.Frozen here in vitrobot.
description: <strong>Tilt Series Date:</strong> 2015-06-06</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Moh and Sahand USC</p>
<strong>Sample Preparation:</strong> This sample was frozen after being in oxygen deficiency for 40h. Checked by SEM and had nanowires. Vitrobot freezing conditions 6s blot force, 3s blot time, 1s drain time, 4ul on grid.</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-06-06-58/rawdata/</p>nanochemowt2day_atlas30018.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-06-06-58/rawdata/nanochemowt2day_atlas30018.mrc"
        > <i class="download icon"></i> Download </a></p>

        nanochemowt2day_atlas30018_full.rec,  Reconstruction (Pixel Size 1.92 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-06-06-58/3dimage_58185/nanochemowt2day_atlas30018_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/an8dz-wmg26
title: WT LP01 from Liu lab, Yale

description: Type four secretion system, T4SS
description: <strong>Tilt Series Date:</strong> 2016-11-28</p>
<strong>Data Taken By:</strong> Yuxi Liu</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-51.0°, 51.0°), step: 3°, constant angular increment, dosage: 50.0 eV/Å²,  defocus: -5.0 μm,  magnification: 15500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
<strong>Collaborators and Roles:</strong> Data collected by Bo Hu in Jun Liu lab at Yale from their Polara. Partial WT strain data set. Primary literature:  doi: 10.1038/s41564-018-0165-z</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-234/rawdata/</p>T4SSWTDec12A079_driftcorr.mrc,  Tilt Series (Pixel Size 0.25 nm), 2.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-234/rawdata/T4SSWTDec12A079_driftcorr.mrc"
        > <i class="download icon"></i> Download </a></p>

        T4SSWTDec12A079_driftcorr.rec,  Reconstruction (Pixel Size 1.0 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-234/3dimage_104994/T4SSWTDec12A079_driftcorr.rec"
        > <i class="download icon"></i> Download </a></p>