cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7479/8kjd-5227
title: A Modular Approach to Vocal Learning: Disentangling the Diversity of a Complex Behavioral Trait

description: Vocal learning is a behavioral trait in which the social and acoustic environment shapes the vocal repertoire of individuals. Over the past century, the study of vocal learning has progressed at the intersection of ecology, physiology, neuroscience, molecular biology, genomics, and evolution. Yet, despite the complexity of this trait, vocal learning is frequently described as a binary trait, with species being classified as either vocal learners or vocal non-learners. As a result, studies have largely focused on a handful of species for which strong evidence for vocal learning exists. Recent studies, however, suggest a continuum in vocal learning capacity across taxa. Here, we further suggest that vocal learning is a multi-component behavioral phenotype comprised of distinct yet interconnected modules. Discretizing the vocal learning phenotype into its constituent modules would facilitate integration of findings across a wider diversity of species, taking advantage of the ways in which each excels in a particular module, or in a specific combination of features. Such comparative studies can improve understanding of the mechanisms and evolutionary origins of vocal learning. We propose an initial set of vocal learning modules supported by behavioral and neurobiological data and highlight the need for diversifying the field in order to disentangle the complexity of the vocal learning phenotype.
DOI: 10.5258/soton/d2347
title: Dataset: Electrokinetic deterministic lateral displacement for fractionation of vesicles and nano-particles

description: This dataset supports the publication in Lab on a Chip entitled 'Electrokinetic deterministic lateral displacement for fractionation of vesicles and nano-particles'. This is the original dataset used to create Figure 5(a) and Figure 7 in the paper and Figure S1 in the Electronic Supplementary Information. It also contains an unprocessed video of the original experiments where it is observed a population of 200 nm pore extruded vesicles suspended in 105 mS/m KCl solution within an asymmetric DLD pillar array in the absence of fluid flow under a 400 Vpp, 100 kHz AC electric field. We can observe how the particles are expelled from the high-intensity electric field zones in just two seconds. This video was used to create Figure 4 in the main text.
DOI: 10.21227/wdt0-ya78
title: COVID-19 tweets dataset for Bengali language

description: This dataset consists of tweets related to COVID-19 that have been crawled from twitter. It consists of 36117 unique tweets. It consists of 34 fields though NULL values are also present for some fields in some samples. This dataset contains all the text data in Bengali language and there is no further need to make use of any tools or twitter api to download the textual data. The keywords that were used to crawl the tweets are:1) corona 2) covid19 3) coronavirus 4) covid 5) sarscov2 The various fields present in the dataset are:1) tweet2) id3) username4) place5) near6) user_rt_id7) video8) name9) trans_src10) likes_count11) retweet_id12) urls13) link14) translate15) photos16) user_id17) mentions18) reply_to19) source20) time21) user_rt22) geo23) timezone24) retweets_count25) cashtags26) trans_dest27) retweet_date28) quote_url29) conversation_id30) created_at31) retweet32) hashtags33) date34) replies_count
DOI: 10.5281/zenodo.4715552
title: Data on COVID-19 in Israel

description: Dataset made from official government datasets by MaxCor labs from the start of the pandemic until April 1st, 2021.
description: This data was created by algorithms that concatenate and sum official government data. In cases where the government data listed as "&lt;15" vaccinations in an age group on a particular day, that number was rounded down to zero.
DOI: 10.6073/pasta/ae57e6e9d87dd5fd204422eeec37b442
title: Plant species percent cover data: Biodiversity II: Effects of Plant Biodiversity on Population and Ecosystem Processes

description: Biodiversity II (E120) is designed to determine how the number of plant species affects the dynamics of ecological processes at the population, community, and ecosystem levels. By experimentally manipulating the number of species and the kinds of species, the amount of plant growth and the change from year to year, that result can be examined. Plots are large (9m x 9m actively maintained) and well-replicated, allowing responses of plant pathogens, insect herbivores, seed predators, soil parameters, invasive plant species and other variables to also be studied. Plots were seeded in May 1994 to have 1, 2, 4, 8, or 16 species, with roughly 30 replicates of each diversity level. The species composition of each plot was chosen by random draw from a pool of 18 grassland perennials that included four warm-season (C4) grasses, four cool-season (C3) grasses, four legumes, four non-legume forbs, and two woody species. All species occur in monoculture allowing comparison of responses of each species in monoculture to combinations of these same species. The experiment was established in 1994 by the lead investigators David Tilman, Peter Reich, Johannes Knops, and David Wedin. Experiment 120 is similar to Experiment 123, but it uses larger plots to provide a large capacity for long-term subexperiments.
DOI: 10.17632/8ygy98r99d.1
title: Catalog of Sky Glows above Aragats Mountain

description: Catalog of Sky Glows above Aragats Mountain
A.Chilingarian G.Hovsepyan, B.Sargsyan
A.Alikhanyan National Laboratory (Yerevan Physics Institute) Brothers Alikhanyan 2, Yerevan, Armenia, 0036 
For several years we monitor sky lights above Aragats research station, located at 3200m a.s.l in Armenia [1] with panoramic camera(s) making shots each second [2]. We register 14 episodes of the emergence of lights during thunderstorms and enhanced fluxes of electrons and gamma rays, so-called thunderstorm ground enhancements (TGEs [3,4]). The origin of these light spots, extending for several seconds are supposed to be the atmospheric discharges [5], intense fluxes of TGE electrons [6], ball lightning [7,8], and geomagnetic disturbances [9]. A more prosaic explanation is the corona discharges on the metallic structures plenty at the station environments. However, after installing 3 panoramic cameras at the station, the independent shot demonstrates that at least some of the registered light spots really appear in the skies, and not at metallic masts due to emerging strong near-surface electric fields. 
We present a catalog of the light spots registered in 2018-2021 with detailed information on relevant measurements of particle fluxes, near-surface electric field (NSEF), lightning location, and many others. Links provided in the EXEL table allows not only to see hundreds of light spots and dynamics of their appearance but also give access to data from hundreds of measuring channels from advanced experimental facilities of Aragats research station. A detailed explanation of the dataset is available from the long description.
DOI: 10.17632/9hsrxcb2d2.1
title: Lower uterine segment thickness measurements and clinical features dataset

description: This is the dataset of 317 patients with term singleton pregnancies who have had a cesarean operation and applied to the Department of Obstetrics and Gynecology Labor Unit of Ankara City Hospital, Ankara, Turkey between February and July 2021. Information regarding demographics, body-mass indices, smoking and drinking habits, clinical features, past pregnancies, number and history of abortions, inter-delivery period, gestation week, number of previous cesarean operations, fetal presentation, fetal weight, tocography data, trans-abdominal ultrasonographic measurement of lower uterine segment full thickness and myometrium thickness, uterine dehiscence or rupture findings during cesarean section was collected.
DOI: 10.17632/2vwx9bc9b2.2
title: Investigating the intracellular growth, cytotoxicity and apoptotic effects of solar irradiated Campylobacter jejuni in a murine macrophage cell line (RAW 264.7)

description: Campylobacter jejuni is a leading cause of gastroenteritis worldwide. Solar disinfected (SODIS) water can reduce diarrhoeal incidences in communities where potable water is inaccessible. SODIS water has been associated with the reduction of diarrhoeal incidences amongst SODIS users. Thus solar attenuation of bacteria may have a significant impact on immune cells such as macrophages. When solar irradiated cells die the release antigenic materials such lipopolysaccharides and intracellular contents into the water. The solar irradiated bacterial may have an impact on the cytotoxicity and cell death of immune cells such as macrophages. This study assessed the effects of solar irradiation on the viability, metabolic activity and three virulence characteristics (invasion, cytotoxicity, and apoptosis) of C. jejuni on RAW 264.7 cells. Samples of C. jejuni were suspended in water and treated in the following ways (i) heat and chemically attenuated (1% formalin at 60°C for one hour), (ii)) exposure to solar ultraviolet radiation (SUVR) for 0, 4 and 8 and, (iii) non-exposure to SUVR. The metabolic activity was assayed spectrophotometrically using Alamar Blue. The C. jejuni samples were used to infect macrophage RAW264.7 cells and its intracellular growth was assessed by using the gentamicin protection assay. Cytotoxicity was assessed by using the Lactate Dehydrogenase Assay (LDH). Apoptosis of the treated macrophages was analysed by Flow Cytometry. The results showed that all the C. jejuni were not culturable. However, the non-solar irradiated Campylobacter jejuni retained its metabolic activity (40.2%±1%) whereas no metabolic activity was observed in the heat and chemically attenuated and solar irradiated bacteria. Intracellular growth of the bacteria in the RAW264.7 cells was not detected in all the treated samples. The non-irradiated C. jejuni showed higher cytotoxic and apoptotic effects on macrophages than the heat attenuated and solar irradiated samples. In conclusion, solar irradiation of C. jejuni eliminates its metabolic activity and also reduces its ability to induce cytotoxicity and apoptosis in the macrophages.
DOI: 10.5281/zenodo.1258642
title: Photomicrographs: transverse sections of GUS-stained apices for AGO7 promoter analysis

description: These photomicrographs of histological sections of stained tissue support a paper by Hoyer et al. (2019): https://doi.org/10.1002/pld3.102

Many additional photomicrographs from this and related experiments were taken by JSH, EEH, M. Hassert, and H. Fowler. Email j.s.hoyer@wustl.edu if you have questions or would like to examine this additional data.

 

Methods text:

Histological GUS assays were essentially as described (Bomblies 2002,  Chitwood et al. 2009,  Strader et al. 2011). Seedlings were collected into ice-cold 90% acetone, incubated at -20 °C for 20 minutes and then room temperature for another 20 minutes. Seedlings were washed twice (5 minutes each) with staining buffer (100 mM sodium phosphate [pH 7],  20% methanol,  0.1% Triton X-100,  1.5 mM ferri- and ferrocyanide).

Staining buffer with 0.5 mg/mL 5-bromo-4-chloro-3-indolyl-beta-d-glucuronic acid (X-Gluc) was vacuum-infiltrated into seedlings on ice for two rounds of 15 minutes each. Samples were then incubated at 37 °C for 20 hours, taken through an ethanol/histoclear series, and infiltrated with Paraplast Plus at 60 °C, before embedding (Bomblies 2002). Tissue sections (10 µm thickness) were mounted on Probe-On Plus slides (Thermo Fisher), deparaffinized with histoclear, and coverslipped. Sections were viewed and photographed with a Leica DM750 microscope and ICC50 HD camera.
DOI: 10.5281/zenodo.4741933
title: MaxCor Labs COVID-19 in Israel Datasets on COVID-19 from 2020 to April 2021

description: MaxCor labs has produced several .csv files of datasets related to the COVID-19 pandemic in Israel. The data is based on data from several datasets produced by the Israeli Ministry of Health with the addition of data from Oxford University, Blavatnik School of Government COVID-19 Government Response Tracker. Full details on the dataset and the code used to produce it are provided.
DOI: 10.5281/zenodo.6020543
title: Benchmark problems for transcranial ultrasound simulation: Datasets for intercomparison of compressional wave models

description: This dataset contains the skull maps and modeling results associated with the forthcoming publication "Benchmark problems for transcranial ultrasound simulation: Intercomparison of compressional wave models".
DOI: 10.5517/cc1j9yc4
title: CCDC 1409736: Experimental Crystal Structure Determination

description: Related Article: Frank R. Fronczek|2015|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6073/pasta/037b3d380a1c641d589462aca0aba86e
title: Fire Fuel Load: Biodiversity II: Effects of Plant Biodiversity on Population and Ecosystem Processes

description: Biodiversity II (E120) is designed to determine how the number of plant species affects the dynamics of ecological processes at the population, community, and ecosystem levels. By experimentally manipulating the number of species and the kinds of species, the amount of plant growth and the change from year to year, that result can be examined. Plots are large (9m x 9m actively maintained) and well-replicated, allowing responses of plant pathogens, insect herbivores, seed predators, soil parameters, invasive plant species and other variables to also be studied. Plots were seeded in May 1994 to have 1, 2, 4, 8, or 16 species, with roughly 30 replicates of each diversity level. The species composition of each plot was chosen by random draw from a pool of 18 grassland perennials that included four warm-season (C4) grasses, four cool-season (C3) grasses, four legumes, four non-legume forbs, and two woody species. All species occur in monoculture allowing comparison of responses of each species in monoculture to combinations of these same species. The experiment was established in 1994 by the lead investigators David Tilman, Peter Reich, Johannes Knops, and David Wedin. Experiment 120 is similar to Experiment 123, but it uses larger plots to provide a large capacity for long-term subexperiments.
DOI: 10.6073/pasta/09fdbccac15ab171f6ea58cfc4a49c81
title: Fire Severity: Biodiversity II: Effects of Plant Biodiversity on Population and Ecosystem Processes

description: Biodiversity II (E120) is designed to determine how the number of plant species affects the dynamics of ecological processes at the population, community, and ecosystem levels. By experimentally manipulating the number of species and the kinds of species, the amount of plant growth and the change from year to year, that result can be examined. Plots are large (9m x 9m actively maintained) and well-replicated, allowing responses of plant pathogens, insect herbivores, seed predators, soil parameters, invasive plant species and other variables to also be studied. Plots were seeded in May 1994 to have 1, 2, 4, 8, or 16 species, with roughly 30 replicates of each diversity level. The species composition of each plot was chosen by random draw from a pool of 18 grassland perennials that included four warm-season (C4) grasses, four cool-season (C3) grasses, four legumes, four non-legume forbs, and two woody species. All species occur in monoculture allowing comparison of responses of each species in monoculture to combinations of these same species. The experiment was established in 1994 by the lead investigators David Tilman, Peter Reich, Johannes Knops, and David Wedin. Experiment 120 is similar to Experiment 123, but it uses larger plots to provide a large capacity for long-term subexperiments.
DOI: 10.5281/zenodo.6011144
title: Gulf Stream Daily Temperature, Salinity and Mixed Layer Depth fields from Ocean Stratification network (OSnet).

description: The OSnet Gulf Stream product consists of 4D daily Temperature, Salinity and Mixed Layer Depth, available on a 1/4 degree regular grid and on 51 depth levels from the surface down to 1000m, in the Gulf Stream region from 01-01-1993 to 31-12-2019.<br> We introduce OSnet (Ocean Stratification network) in the Gulf Stream region, a new ocean reconstruction system aimed at providing a physically consistent analysis of the upper ocean stratification. The interpolation scheme is a bootstrapped multilayer perceptron trained to predict simultaneously temperature and salinity (T-S) profiles down to 1000m and the Mixed Layer Depth (MLD) from satellite data covering 1993 to 2019. The inputs are sea surface temperature and sea level anomaly, complemented with mean dynamic topography, bathymetry, longitude, latitude and the day of the year. The in-situ profiles are from the CORA database and include Argo floats and ship-based profiles. The prediction of the MLD is used to adjust a posteriori the vertical gradients of predicted T-S profiles, thus increasing the accuracy of the solution and removing vertical density inversions. The prediction is generalized on a 1/4 degree daily grid, producing four-dimensional fields of temperature, salinity and mixed layer depth, with their associated confidence interval issued from the bootstrap. The full dataset is downloadable with the zenodo_get tool and the command :<code> zenodo_get 6011144</code>
DOI: 10.6073/pasta/c7866d02970685eee6e3d1dbf774a529
title: Fire Temperatures: Biodiversity II: Effects of Plant Biodiversity on Population and Ecosystem Processes

description: Biodiversity II (E120) is designed to determine how the number of plant species affects the dynamics of ecological processes at the population, community, and ecosystem levels. By experimentally manipulating the number of species and the kinds of species, the amount of plant growth and the change from year to year, that result can be examined. Plots are large (9m x 9m actively maintained) and well-replicated, allowing responses of plant pathogens, insect herbivores, seed predators, soil parameters, invasive plant species and other variables to also be studied. Plots were seeded in May 1994 to have 1, 2, 4, 8, or 16 species, with roughly 30 replicates of each diversity level. The species composition of each plot was chosen by random draw from a pool of 18 grassland perennials that included four warm-season (C4) grasses, four cool-season (C3) grasses, four legumes, four non-legume forbs, and two woody species. All species occur in monoculture allowing comparison of responses of each species in monoculture to combinations of these same species. The experiment was established in 1994 by the lead investigators David Tilman, Peter Reich, Johannes Knops, and David Wedin. Experiment 120 is similar to Experiment 123, but it uses larger plots to provide a large capacity for long-term subexperiments.
DOI: 10.5281/zenodo.6337571
title: AWI-CM3 version 3.0 pre-industrial control data

description: Pre-industrial control simulation output from AWI-CM3 version 3.0 Years: 1850-2014 Frequency: Annual means Variables: T2M: near surface (2m) air temperature PRECIP: precipitation a_ice: sea ice concentraion m_ice: sea ice mass per unit area salt: salinity w: vertical velocity MLD2: Mixed layer depth according to Large et al. (https://doi.org/10.1175/1520-0485(1997)027%3C2418:STSFAB%3E2.0.CO;2)
DOI: 10.7303/syn27082811
title: Brighten Studies - Baseline PHQ9 Survey
DOI: 10.6073/pasta/ac1b5f99b4cb838860adf30545da9413
title: Hourly climate data: Meterologic Measurements at Cedar Creek Natural History Area

description: Meteorological measurements include air temperature, precipitation, wind speed and direction, soil temperature, and relative humidity. These measurements are taken on an hourly basis.
DOI: 10.25318/3210015801-eng
title: Farms classified by operating arrangement, Census of Agriculture historical data

description: Census of Agriculture, 1976 to 2021. Farms classified by operating arrangement.
DOI: 10.6080/k03x84v3
title: Multi-site neural recordings in the auditory midbrain of unanesthetized rabbits listening natural texture sounds and sound correlation auditory models
title: CRCNS.org bst-2

description: The accompanying neural data, sounds, and models are outlined in the publication: Mina Sadeghi, Xiu Zhai, Ian H. Stevenson, Monty A. Escabí, A Neural Ensemble Correlation Code for Sound Category Identification. PLOS Biology (in press). The neural data consists of multi-trial recordings of analog multi-unit activity (aMUA) measured from 16-channel linear recording arrays in the auditory midbrain (inferior colliculus) of unanesthetized rabbits listening to natural sounds. The sound delivery consisted of three paradigms as described in detail in the manuscript. Paradigm 1 consist of five unaltered natural sound textures: fire, water, crowd noise, bird chorus, and a rattling snake sound. Paradigm 2, consists of the same sounds as Paradigm 1 along with perturbed variants with equalized power spectrum. For paradigm 3, 6 sound exemplars were selected and delivered from three sound categories (water, fire, and human speech). All of the sounds used along with MATLAB code to estimate multi-site neural correlations, as described in the manuscript, are provide. We also include MATLAB code used to measure time-varying correlations using an auditory model representation along with the database of sounds used for classification of sound categories, as described in the manuscript.
DOI: 10.17632/68pd82kgpg.1
title: Histone density analysis in cancer cell lines

description: Histone density analysis in cancer cell lines
DOI: 10.18739/a24x54g9w
title: Ocean conductivity, temperature, density (CTD), oxygen, and nitrate profiles, Eurasian and Makarov basins, Arctic Ocean, 2013-2018

description: Responding to urgent needs for a long-term multidisciplinary observation system for understanding rapid high-latitude climate change in the Arctic Ocean, a Eurasian and Makarov Basin (EMB) observational network is proposed as an element of the Arctic Observing Network (AON). Three August-September cruises, one every two years, will be conducted, with extensive measurements along continental margins, a boundary current conduit; cruises will cover vast areas from Svalbard to the East Siberian Sea. The program ties together oceanographic, chemical, and ice observations using moorings, repeated oceanographic sections, and Lagrangian drifters to provide vital information about Arctic Ocean changes. The overarching goal of the study as an AON element is to compile a cohesive picture of the state and transformations of Atlantic Water (AW) in the EMB, with particular focus on three major observational targets: (1) along-slope AW transport by the boundary currents (2) interaction of AW branches with shelf waters, deep basin interior and upper ocean (3) EMB indications of changes in the upper ocean circulation. The proposed targets are broad in scope and pose a wide range of challenges to modern high-latitude observational oceanography. The EMB's size and location mean that this part of the Arctic Ocean is representative of pan-arctic conditions and processes, and therefore appropriate for long-term observing. Therefore, the project is an important element of the pan-AON. This dataset contains zipped directory of Conductivity-Temperature-Depth (CTD) profiles which also include oxygen and nitrate measurements for 3 cruises in the Arctic Ocean. Also included is a merged dataset for each cruise (generated by the included R script), and corresponding station locations.
DOI: 10.6084/m9.figshare.19039025.v1
title: Raw data_Hematology_Catha edulis_Kariuki

description: Hematological parameters_Catha edulis_Kariuki<br>