cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6401786
title: Additional file 2: of Comparative transcriptome analysis of nonchilled, chilled, and late-pink bud reveals flowering pathway genes involved in chilling-mediated flowering in blueberry

description: Table S1. DE floral genes in chilled flower buds (CB) [vs nonchilled flower buds (NB)] and late-pink buds (LPB) (vs CB) in â Legacyâ . LogFC for chilled buds: Log2(CB/NB). LogFC for late-pink buds: Log2(LPB/CB). #N/A: no differential expression. (XLSX 140 kb)
DOI: 10.6084/m9.figshare.6401786.v1
title: Additional file 2: of Comparative transcriptome analysis of nonchilled, chilled, and late-pink bud reveals flowering pathway genes involved in chilling-mediated flowering in blueberry

description: Table S1. DE floral genes in chilled flower buds (CB) [vs nonchilled flower buds (NB)] and late-pink buds (LPB) (vs CB) in â Legacyâ . LogFC for chilled buds: Log2(CB/NB). LogFC for late-pink buds: Log2(LPB/CB). #N/A: no differential expression. (XLSX 140 kb)
DOI: 10.6084/m9.figshare.6401768
title: Additional file 1: of Comparative transcriptome analysis of nonchilled, chilled, and late-pink bud reveals flowering pathway genes involved in chilling-mediated flowering in blueberry

description: Table S2. DE MADS-box genes in chilled flower buds (CB) [vs nonchilled flower buds (NB)] and late-pink buds (LPB) (vs CB) in â Legacyâ . LogFC for chilled buds: Log2(CB/NB). LogFC for late-pink buds: Log2(LPB/CB). Except #N/A (no differential expression), all the rest are DE genes. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.6401768.v1
title: Additional file 1: of Comparative transcriptome analysis of nonchilled, chilled, and late-pink bud reveals flowering pathway genes involved in chilling-mediated flowering in blueberry

description: Table S2. DE MADS-box genes in chilled flower buds (CB) [vs nonchilled flower buds (NB)] and late-pink buds (LPB) (vs CB) in â Legacyâ . LogFC for chilled buds: Log2(CB/NB). LogFC for late-pink buds: Log2(LPB/CB). Except #N/A (no differential expression), all the rest are DE genes. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.6401759
title: Additional file 1: of Association of plasma PCB levels and HbA1c concentration in Iran

description: PCB_DM_data. (XLSX 55Â kb)
DOI: 10.6084/m9.figshare.6401759.v1
title: Additional file 1: of Association of plasma PCB levels and HbA1c concentration in Iran

description: PCB_DM_data. (XLSX 55Â kb)
DOI: 10.6084/m9.figshare.6401723
title: Additional file 3: of Connecting genetics and gene expression data for target prioritisation and drug repositioning

description: Table S3. Drug repositioning hypotheses based on the significance of the overlap between genes genetically associated with the disease and genes differentially expressed after drug treatment. Results are filtered for adjusted p-value &lt;1e-10. (CSV 1089 kb)
DOI: 10.6084/m9.figshare.6401723.v1
title: Additional file 3: of Connecting genetics and gene expression data for target prioritisation and drug repositioning

description: Table S3. Drug repositioning hypotheses based on the significance of the overlap between genes genetically associated with the disease and genes differentially expressed after drug treatment. Results are filtered for adjusted p-value &lt;1e-10. (CSV 1089 kb)
DOI: 10.6084/m9.figshare.6401708
title: Additional file 2: of Connecting genetics and gene expression data for target prioritisation and drug repositioning

description: Table S2. List of current drug indications with a significant overlap between genes significantly up- or down-regulated after drug treatment and GWAS hits. Results are filtered for adjusted p-value
DOI: 10.6084/m9.figshare.6401708.v1
title: Additional file 2: of Connecting genetics and gene expression data for target prioritisation and drug repositioning

description: Table S2. List of current drug indications with a significant overlap between genes significantly up- or down-regulated after drug treatment and GWAS hits. Results are filtered for adjusted p-value
DOI: 10.6084/m9.figshare.6401696
title: MOESM1 of Bacterial polyextremotolerant bioemulsifiers from arid soils improve water retention capacity and humidity uptake in sandy soil

description: Additional file 1:Table S1. List of the 23 bacterial strains used in this work.
DOI: 10.6084/m9.figshare.6401696.v1
title: MOESM1 of Bacterial polyextremotolerant bioemulsifiers from arid soils improve water retention capacity and humidity uptake in sandy soil

description: Additional file 1:Table S1. List of the 23 bacterial strains used in this work.
DOI: 10.6084/m9.figshare.6401681
title: Additional file 1: of Connecting genetics and gene expression data for target prioritisation and drug repositioning

description: Table S1. List of diseases with a significant overlap between genes differentially expressed and genes genetically associated with disease. Results are filtered for adjusted p-value
DOI: 10.6084/m9.figshare.6401681.v1
title: Additional file 1: of Connecting genetics and gene expression data for target prioritisation and drug repositioning

description: Table S1. List of diseases with a significant overlap between genes differentially expressed and genes genetically associated with disease. Results are filtered for adjusted p-value
DOI: 10.6084/m9.figshare.6401663
title: MOESM1 of A non-parametric maximum for number of selected features: objective optima for FDR and significance threshold with application to ordinal survey analysis

description: Additional file 1. The raw data file used in this study.
DOI: 10.6084/m9.figshare.6401663.v1
title: MOESM1 of A non-parametric maximum for number of selected features: objective optima for FDR and significance threshold with application to ordinal survey analysis

description: Additional file 1. The raw data file used in this study.
DOI: 10.6084/m9.figshare.6401618
title: Additional file 2: of Newspaper reporting of the April 2007 eruption of Piton de la Fournaise part 1: useful information or tabloid sensationalism?

description: Local Volcanic Hazards reported in Le Journal de L'ile: March - May 2007 (XLSX 79 kb)
DOI: 10.6084/m9.figshare.6401618.v1
title: Additional file 2: of Newspaper reporting of the April 2007 eruption of Piton de la Fournaise part 1: useful information or tabloid sensationalism?

description: Local Volcanic Hazards reported in Le Journal de L'ile: March - May 2007 (XLSX 79 kb)
DOI: 10.6084/m9.figshare.6401597
title: Additional file 1: of Newspaper reporting of the April 2007 eruption of Piton de la Fournaise part 1: useful information or tabloid sensationalism?

description: Hazards reported in Le Journal de L'ile: March - May 2007 (XLSX 24 kb)
DOI: 10.6084/m9.figshare.6401597.v1
title: Additional file 1: of Newspaper reporting of the April 2007 eruption of Piton de la Fournaise part 1: useful information or tabloid sensationalism?

description: Hazards reported in Le Journal de L'ile: March - May 2007 (XLSX 24 kb)
DOI: 10.6084/m9.figshare.6401552
title: Additional file 4 of Genome-wide prediction of cis-regulatory regions using supervised deep learning methods

description: List of features used for each cell type. (ZIP 1.36 kb)
DOI: 10.6084/m9.figshare.6401552.v1
title: Additional file 4 of Genome-wide prediction of cis-regulatory regions using supervised deep learning methods

description: List of features used for each cell type. (ZIP 1.36 kb)
DOI: 10.6084/m9.figshare.6401534
title: Additional file 3 of Genome-wide prediction of cis-regulatory regions using supervised deep learning methods

description: Predictions on CAGE supported bidirectional loci. AiA: Active in the FANTOM Enhancer Atlas; IiA: Inactive in the FANTOM Enhancer Atlas; NiA: Not included in the FANTOM Enhancer Atlas; Specific: Predicted cell-specific A-Es. (ZIP 4820 kb)
DOI: 10.6084/m9.figshare.6401534.v1
title: Additional file 3 of Genome-wide prediction of cis-regulatory regions using supervised deep learning methods

description: Predictions on CAGE supported bidirectional loci. AiA: Active in the FANTOM Enhancer Atlas; IiA: Inactive in the FANTOM Enhancer Atlas; NiA: Not included in the FANTOM Enhancer Atlas; Specific: Predicted cell-specific A-Es. (ZIP 4820 kb)
DOI: 10.6084/m9.figshare.6401522
title: Additional file 2: of Influence of genome and bio-ecology on the prevalence of genome exchange in unisexuals of the Ambystoma complex

description: Microsatellite and AFLP scores of sampled individuals. Sheet 1: Unisexualsâ Microsatellite scores. Individuals are also associated to their main genetic group (according to its J-alleles: A, B, C, D or E â X stands for any different genotype), to a specific genotype (to acknowledge for different ploidy level or variation of L-alleles within a main group, and to associate clones) and to its biotype (ex: LLJ). Sheet 2: AFLP scores. The presence/absence of the different bands are labelled according to the combination used (GCNN) and the size of the band. Sheet 3: Polysat Matrix. Microsatellite scores in polysat format. Sheet 4: Polysat POP. Two matrices for population assignment in polysat: according to the sampling site or according to the main genetic group of each individual. Sheet 5: Matrices for weighting J. Matrices used to weight J-alleles and J-genotype. Sheet 6: Matrices for weighting LJ. Matrices used to weight LJ-alleles and LJ-genotype. Individual lines have been multiplied to account for ploidy variation. Sheet 7: LL alleles. Microsatellite scores of the LL individuals found, in table and in population format. Sheet 8: Statistics on m-sat scores. Allelic means, standard deviation and other parameters for each loci, including differences between alleles and the mean and its nearest neighbours, per alleles, per locus. (XLSX 181 kb)
DOI: 10.6084/m9.figshare.6401522.v1
title: Additional file 2: of Influence of genome and bio-ecology on the prevalence of genome exchange in unisexuals of the Ambystoma complex

description: Microsatellite and AFLP scores of sampled individuals. Sheet 1: Unisexualsâ Microsatellite scores. Individuals are also associated to their main genetic group (according to its J-alleles: A, B, C, D or E â X stands for any different genotype), to a specific genotype (to acknowledge for different ploidy level or variation of L-alleles within a main group, and to associate clones) and to its biotype (ex: LLJ). Sheet 2: AFLP scores. The presence/absence of the different bands are labelled according to the combination used (GCNN) and the size of the band. Sheet 3: Polysat Matrix. Microsatellite scores in polysat format. Sheet 4: Polysat POP. Two matrices for population assignment in polysat: according to the sampling site or according to the main genetic group of each individual. Sheet 5: Matrices for weighting J. Matrices used to weight J-alleles and J-genotype. Sheet 6: Matrices for weighting LJ. Matrices used to weight LJ-alleles and LJ-genotype. Individual lines have been multiplied to account for ploidy variation. Sheet 7: LL alleles. Microsatellite scores of the LL individuals found, in table and in population format. Sheet 8: Statistics on m-sat scores. Allelic means, standard deviation and other parameters for each loci, including differences between alleles and the mean and its nearest neighbours, per alleles, per locus. (XLSX 181 kb)
DOI: 10.6084/m9.figshare.6401516
title: Additional file 2 of Genome-wide prediction of cis-regulatory regions using supervised deep learning methods

description: Genome-wide predictions of cis-regulatory regions for all six cell types. (ZIP 20400 kb)
DOI: 10.6084/m9.figshare.6401420
title: Additional file 4: of Newspaper reporting of the April 2007 eruption of Piton de la Fournaise, part 2: framing the hazard

description: Piton April 2007 - Headline Analysis.xlsx: Results of headline analysis. (XLSX 113Â kb)
DOI: 10.6084/m9.figshare.6401420.v1
title: Additional file 4: of Newspaper reporting of the April 2007 eruption of Piton de la Fournaise, part 2: framing the hazard

description: Piton April 2007 - Headline Analysis.xlsx: Results of headline analysis. (XLSX 113Â kb)
DOI: 10.6084/m9.figshare.6401414
title: Additional file 2: of Negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome

description: This document contains the full list of genes with their respective significance and dN/dS values. (TXT 4499Â kb)
DOI: 10.6084/m9.figshare.6401414.v1
title: Additional file 2: of Negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome

description: This document contains the full list of genes with their respective significance and dN/dS values. (TXT 4499Â kb)
DOI: 10.6084/m9.figshare.6401402
title: Additional file 3: of Newspaper reporting of the April 2007 eruption of Piton de la Fournaise, part 2: framing the hazard

description: Flash Tests - Group C.xlsx: Flash test results for Group C (Students). (XLSX 111Â kb)
DOI: 10.6084/m9.figshare.6401402.v1
title: Additional file 3: of Newspaper reporting of the April 2007 eruption of Piton de la Fournaise, part 2: framing the hazard

description: Flash Tests - Group C.xlsx: Flash test results for Group C (Students). (XLSX 111Â kb)
DOI: 10.6084/m9.figshare.6401390
title: Additional file 1: of Negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome

description: This document contains additional supporting evidence presented as supplemental tables. (XLSX 50Â kb)
DOI: 10.6084/m9.figshare.6401390.v1
title: Additional file 1: of Negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome

description: This document contains additional supporting evidence presented as supplemental tables. (XLSX 50Â kb)
DOI: 10.6084/m9.figshare.6401381
title: Additional file 2: of Newspaper reporting of the April 2007 eruption of Piton de la Fournaise, part 2: framing the hazard

description: Flash Tests - Group B.xlsx: Flash test results for Group B (Tourist Guides). (XLSX 61Â kb)
DOI: 10.6084/m9.figshare.6401381.v1
title: Additional file 2: of Newspaper reporting of the April 2007 eruption of Piton de la Fournaise, part 2: framing the hazard

description: Flash Tests - Group B.xlsx: Flash test results for Group B (Tourist Guides). (XLSX 61Â kb)
DOI: 10.6084/m9.figshare.6401366
title: Additional file 1: of Newspaper reporting of the April 2007 eruption of Piton de la Fournaise, part 2: framing the hazard

description: Flash Tests - Group A.xlsx: Flash test results for Group A (OVPF). (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.6401366.v1
title: Additional file 1: of Newspaper reporting of the April 2007 eruption of Piton de la Fournaise, part 2: framing the hazard

description: Flash Tests - Group A.xlsx: Flash test results for Group A (OVPF). (XLSX 16Â kb)
DOI: 10.7910/dvn/6ky7u5/o4apvt
title: QoL ESRD.tab

description: :unav
DOI: 10.6084/m9.figshare.6401351
title: Additional file 2: of High-throughput analysis of Yersinia pseudotuberculosis gene essentiality in optimised in vitro conditions, and implications for the speciation of Yersinia pestis

description: Table S2. Comparison of Y. pseudotuberculosis In vitro Essential Genes with Published Y. pestis Essential Genes. The essential genes that we identified in Y. pseudotuberculosis were cross-referenced against the published Y. pestis essential genes under matched conditions (Yang et al. [26]). The shared, and unique essential genes of both species are listed. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.6401351.v1
title: Additional file 2: of High-throughput analysis of Yersinia pseudotuberculosis gene essentiality in optimised in vitro conditions, and implications for the speciation of Yersinia pestis

description: Table S2. Comparison of Y. pseudotuberculosis In vitro Essential Genes with Published Y. pestis Essential Genes. The essential genes that we identified in Y. pseudotuberculosis were cross-referenced against the published Y. pestis essential genes under matched conditions (Yang et al. [26]). The shared, and unique essential genes of both species are listed. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.6401333
title: Additional file 1: of High-throughput analysis of Yersinia pseudotuberculosis gene essentiality in optimised in vitro conditions, and implications for the speciation of Yersinia pestis

description: Table S1. Essential Genes List Y. pseudotuberculosis IP32953 in BAB Liquid Culture 28Â°C. The essential genes under defined in vitro conditions were calculated from raw sequencing data (see Methods) and listed; note that phage-related â essentialâ genes are listed separately. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.6401333.v1
title: Additional file 1: of High-throughput analysis of Yersinia pseudotuberculosis gene essentiality in optimised in vitro conditions, and implications for the speciation of Yersinia pestis

description: Table S1. Essential Genes List Y. pseudotuberculosis IP32953 in BAB Liquid Culture 28Â°C. The essential genes under defined in vitro conditions were calculated from raw sequencing data (see Methods) and listed; note that phage-related â essentialâ genes are listed separately. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.6401258
title: Data_S1.xlsx

description: Excel spreadsheet containing, in separate sheets, the underlying numerical data of the findings.
DOI: 10.6084/m9.figshare.6401258.v1
title: Data_S1.xlsx

description: Excel spreadsheet containing, in separate sheets, the underlying numerical data of the findings.
DOI: 10.6084/m9.figshare.6401171
title: STAgR_SAM/pcSAM_helper

description: This plasmid can be used as a PCR Template for generating STAgR cloning vectors with a MS2 gRNA Scaffold for SAM.<br>
DOI: 10.6084/m9.figshare.6401171.v2
title: STAgR_SAM/pcSAM_helper

description: This plasmid can be used as a PCR Template for generating STAgR cloning vectors with a MS2 gRNA Scaffold for SAM.<br>
DOI: 10.6084/m9.figshare.6401171.v1
title: STAgR_SAM

description: This plasmid can be used as a PCR Template for generating STAgR cloning vectors with a MS2 gRNA Scaffold for SAM.<br>
DOI: 10.6084/m9.figshare.6401084
title: Geochronology and geochemistry of Ordovician plutons in the Erguna Block (NE China): further insights into the tectonic evolution of the Xing’an–Mongolia Orogenic Belt

description: The Ordovician plutons in the Erguna Block, NE China, can be classified into two groups: Early Ordovician diorites with zircon U–Pb ages ranging from 486 to 485 Ma and Middle Ordovician gabbros and granites with zircon U–Pb ages ranging from 466 to 463 Ma. The diorites are calc-alkaline in nature and are characterized by weak to moderate enrichments of large ion lithophile elements (LILE) and light rare earth elements (LREE) relative to high field strength elements (HFSE) and heavy rare earth elements (HREE). The gabbros and granites have high total alkali contents, and all samples are enriched in LREE and LILE and depleted in HFSE such as Nb, Ta, and Ti. Isotopically, Early Ordovician diorites display values that are less radiogenic [ε<sub>Hf</sub>(t) = + 9.9–+16.8] compared to those of Middle Ordovician gabbros [ε<sub>Hf</sub>(t) = − 3.0–+5.0]. Middle Ordovician granites have positive ε<sub>Hf</sub>(t) values of +1.4 to +4.3 and two-stage Hf model ages (T<sub>DM2</sub>) of 1167 to 1356 Ma. These data indicate that the diorites may have been generated by the partial melting of a recently metasomatized mantle source, whereas the gabbros and granites may have been formed by the partial melting of enriched lithospheric mantle and Mesoproterozoic crust, respectively. Our results, combined with other regional results, suggest that Early Ordovician magmatism was likely associated with the northward subduction of the Heihe–Xilinhot oceanic plate beneath the Erguna–Xing’an Block, whereas the Middle Ordovician gabbros and granites were most likely formed in an extensional setting controlled by the rollback of this subducted oceanic plate.
DOI: 10.6084/m9.figshare.6401084.v1
title: Geochronology and geochemistry of Ordovician plutons in the Erguna Block (NE China): further insights into the tectonic evolution of the Xing’an–Mongolia Orogenic Belt

description: The Ordovician plutons in the Erguna Block, NE China, can be classified into two groups: Early Ordovician diorites with zircon U–Pb ages ranging from 486 to 485 Ma and Middle Ordovician gabbros and granites with zircon U–Pb ages ranging from 466 to 463 Ma. The diorites are calc-alkaline in nature and are characterized by weak to moderate enrichments of large ion lithophile elements (LILE) and light rare earth elements (LREE) relative to high field strength elements (HFSE) and heavy rare earth elements (HREE). The gabbros and granites have high total alkali contents, and all samples are enriched in LREE and LILE and depleted in HFSE such as Nb, Ta, and Ti. Isotopically, Early Ordovician diorites display values that are less radiogenic [ε<sub>Hf</sub>(t) = + 9.9–+16.8] compared to those of Middle Ordovician gabbros [ε<sub>Hf</sub>(t) = − 3.0–+5.0]. Middle Ordovician granites have positive ε<sub>Hf</sub>(t) values of +1.4 to +4.3 and two-stage Hf model ages (T<sub>DM2</sub>) of 1167 to 1356 Ma. These data indicate that the diorites may have been generated by the partial melting of a recently metasomatized mantle source, whereas the gabbros and granites may have been formed by the partial melting of enriched lithospheric mantle and Mesoproterozoic crust, respectively. Our results, combined with other regional results, suggest that Early Ordovician magmatism was likely associated with the northward subduction of the Heihe–Xilinhot oceanic plate beneath the Erguna–Xing’an Block, whereas the Middle Ordovician gabbros and granites were most likely formed in an extensional setting controlled by the rollback of this subducted oceanic plate.
DOI: 10.6084/m9.figshare.12893408
title: R0189_20171005a_videos

description: Rat 0189, skilled reaching data collected on 10/5/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12893408.v1
title: R0189_20171005a_videos

description: Rat 0189, skilled reaching data collected on 10/5/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.6400910
title: Why did some practices not implement new antibiotic prescribing guidelines on urinary tract infection - dataset

description: Dataset for the paper "Why did some practices not implement new antibiotic prescribing guidelines on urinary tract infection? A cohort study and survey in NHS England primary care"
DOI: 10.6084/m9.figshare.6400910.v1
title: Why did some practices not implement new antibiotic prescribing guidelines on urinary tract infection - dataset

description: Why did some practices not implement new antibiotic prescribing guidelines on urinary tract infection? A cohort study and survey in NHS England primary care
DOI: 10.6084/m9.figshare.6400910.v3
title: Why did some practices not implement new antibiotic prescribing guidelines on urinary tract infection - dataset

description: Dataset for the paper "Why did some practices not implement new antibiotic prescribing guidelines on urinary tract infection? A cohort study and survey in NHS England primary care"
DOI: 10.6084/m9.figshare.6400910.v2
title: Why did some practices not implement new antibiotic prescribing guidelines on urinary tract infection - dataset

description: Dataset for the paper "Why did some practices not implement new antibiotic prescribing guidelines on urinary tract infection? A cohort study and survey in NHS England primary care"