cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1281374.v2
title: 2009 data on NHS NTC in Oldam and complications + details of other life threatening incidents

description: Data from NHS Oldham in 2009 showing that in 2009 254 non therapeutic circumcisions were performed on under 16s. The Commissioner estimates based on A&E attendance data that 17 presented in A&E with a complication within 30 days and that within 3 months, four children suffered a complication requiring hospital re-admission. The overlap between these two sets is not known but we can assume that complication rates within 3 months were at least 6.7% (N=17) and that the most serious complications affected 1.57% (N=4). In addition, NHS Oldham notes that it has funded the treatment of 9 babies for post circumcision haemorrhage and shock in the period April 2006 - March 2011 (5 years).
DOI: 10.6084/m9.figshare.1281371.v1
title: Software and database resource mentions across the whole of PubMed Central full-text articles

description: This is a compressed .sql.gz file of a MySQL database dump. The table contains the automatically extracted mentions of database and software resource names as extracted by bioNerDS across the full sub-set of open-access full-text PubMed Central articles. Each matched resource is identified by name, text offsets and "normalised" name, and also includes details of the rules from which the name was matched. This dataset is one of the primary research contributions of my PhD work, and a paper currently being finalised for submission to PLoS Computational Biology.
DOI: 10.6084/m9.figshare.1281375.v1
title: North West England

description: Returns from NHS and other sources in north west England, regarding male circumcision morbidity and mortality.
DOI: 10.6084/m9.figshare.1281418.v4
title: Yorkshire circumcision and complication reports

description: Responses from hospitals and NHS commissioners in Yorkshire to questions about circumcision practice and complications 2009-2011
DOI: 10.6084/m9.figshare.1281368.v2
title: Space use variation in co-occurring sister species: response to environmental variation or competition?

description: Data of Dufour et al 2015 Plos One Space use variation in co-occurring sister species: response to environmental variation or competition? Claire M.S Dufour1,2,+, Christine Meynard3, Johan Watson4, Camille Rioux1, Simon Benhamou5, Julie Perez1, Jurie J. du Plessis6, Nico Avenant6, Neville Pillay2,Guila Ganem1,2,+
DOI: 10.6084/m9.figshare.1281418.v5
title: Yorkshire circumcision and complication reports

description: Responses from hospitals and NHS commissioners in Yorkshire to questions about circumcision practice and complications 2009-2011
DOI: 10.6084/m9.figshare.1281368.v1
title: new filesetSpace use variation in co-occurring sister species: response to environmental variation or competition?

description: Data of Dufour et al 2015 Plos One Space use variation in co-occurring sister species: response to environmental variation or competition?
DOI: 10.6084/m9.figshare.1281375.v2
title: North West England circumcision and complication reports

description: Returns from NHS and other sources in north west England, regarding male circumcision morbidity and mortality.
DOI: 10.6084/m9.figshare.1281310
title: Fusion of MODIS and Landsat-8 Surface Temperature Images: A New Approach

description: the folder contains the data for the paper " Fusion of MODIS and Landsat-8 Surface Temperature Images: A New Approach"
DOI: 10.6084/m9.figshare.1281375.v4
title: NORTH WEST CIRCUMCISION REPORTS & SUMMARIES

description: Returns from NHS and other sources in north west England, regarding male circumcision morbidity and mortality. Many more datasets to follow...
DOI: 10.6084/m9.figshare.1281418.v6
title: Yorkshire circumcision and complication reports

description: Responses from hospitals and NHS commissioners in Yorkshire to questions about circumcision practice and complications 2009-2011
DOI: 10.6084/m9.figshare.1281310.v1
title: Fusion of MODIS and Landsat-8 Surface Temperature Images: A New Approach

description: the folder contains the data for the paper " Fusion of MODIS and Landsat-8 Surface Temperature Images: A New Approach"
DOI: 10.6084/m9.figshare.1281375.v3
title: North West England circumcision and complication reports

description: Returns from NHS and other sources in north west England, regarding male circumcision morbidity and mortality.
DOI: 10.6084/m9.figshare.1281291
title: Open Science Resources for Big Data analyses of the Human Connectome

description: Open science tools and data sharing repositories that enable high-throughput state-of-the-art analyses of the human connectome.
DOI: 10.6084/m9.figshare.1281418.v8
title: YORKSHIRE CIRCUMCISION REPORTS & SUMMARIES

description: Responses from hospitals and NHS commissioners in Yorkshire to questions about circumcision practice and complications 2009-2011
DOI: 10.6084/m9.figshare.1281290
title: Big Data Presentations

description: Presentation describing open science tools and resources for big data analyses of neuroimaging data.
DOI: 10.6084/m9.figshare.1281291.v1
title: Open Science Resources for Big Data analyses of the Human Connectome

description: Open science tools and data sharing repositories that enable high-throughput state-of-the-art analyses of the human connectome.
DOI: 10.6084/m9.figshare.1281418.v7
title: Yorkshire circumcision and complication reports

description: Responses from hospitals and NHS commissioners in Yorkshire to questions about circumcision practice and complications 2009-2011
DOI: 10.6084/m9.figshare.1281223
title: Data-LST-PLOS ONE

description: the folder contains the data for the paper " Fusion of MODIS and Landsat-8 Surface Temperature Images: A New Approach"
DOI: 10.6084/m9.figshare.1281248
title: The Human Skin dsDNA Virome: Topographical and Temporal Diversity, Genetic Enrichment, and Dynamic Associations with the Host Microbiome

description: Viruses comprise a major component of the human microbiota, but are poorly understood in the skin, our primary barrier to the external environment. Viral communities have the potential to modulate states of cutaneous health and disease. Bacteriophages are known to influence the structure and function of microbial communities through predation and genetic exchange. Human viruses are associated with skin cancers and a multitude of cutaneous manifestations. Despite these important roles, little is known regarding the human skin virome and its interactions with the host microbiome. Here we evaluate the human cutaneous dsDNA virome by metagenomic sequencing of DNA from purified virus-like particles (VLPs). In parallel we employ metagenomic sequencing of the total skin microbiome to assess co-variation and infer interactions with the virome. Samples were collected from sixteen subjects at eight body sites over one month. In addition to microenviroment, which is known to partition bacterial and fungal microbiota, natural skin occlusion was strongly associated with skin virome community composition. Viral contigs were enriched for genes indicative of a temperate phage replication style, and also maintained genes encoding potential antibiotic resistance and virulence factors. CRISPR spacers identified in the bacterial DNA sequences provided a record of phage predation and suggest a mechanism to explain spatial partitioning of skin phage communities. Finally, we model the structure of bacterial and phage communities together to reveal a complex microbial environment with a Corynebacterium hub. These results reveal the previously underappreciated diversity, encoded functions, and viral-microbial dynamic unique to the human skin virome.
DOI: 10.6084/m9.figshare.1281222
title: Lithium Database of Human Studies (version 1.0) --PubMed & ClinicalTrials.gov

description: Google SpreadSheet Open (URL below) --- Evidence has been cherry-picked,(1) a logical fallacy not exclusive to lithium.(2,3) This phenomenon is also frequently seen when the published evidence of many drugs (psychiatric and non-psychiatric active pharmacological principles) is weighted up against the hidden data of unpublished studies: <br>– Animal models and in vitro studies on isolated tissues, and cell cultures<br>– Pharmacokinetic and pharmacodynamic information<br>– Interventional human studies: clinical trials — e.g., controlled (randomized or non-randomized), single-arm (i.e., uncontrolled trials), cross-over, among other study designs. (read more: Circulation.2007; 115: 1164-1169).<br>– Observational epidemiological studies (e.g., case-control, cohort, cross-sectional).<br>– Other types of pharmacological evidence.(3) 2. Lithium have one of the narrowest therapeutic index among drugs approved into the market by regulatory agencies (e.g., FDA, EMA, INVIMA, among others).(1, 4-6) <strong>References</strong> Ramirez, Jorge H (2014): Lithium Database of Human Studies (version 1.0) –PubMed & ClinicalTrials.gov. figshare.<br>http://dx.doi.org/10.6084/m9.figshare.1281222<br>— Google SpreadSheet Database: https://docs.google.com/spreadsheets/d/1XMKsggpf1ViFzfVo8qY47kJYT5H4zzDP-LUIilFjkrc/edit#gid=1390342057<br>Ramirez, Jorge H (2015): Evidence Live 2015: Analysis of US phase 3 ClinicalTrials.gov records completed before January 1st, 2011 (n=5051; time frame: 2002 to 2014). figshare. http://dx.doi.org/10.6084/m9.figshare.1286769<br>Re: Are clinical trial data shared sufficiently today? No BMJ 2013; 347<br>http://www.bmj.com/content/347/bmj.f1880/rr/763200<br>Lithium Toxicity: http://emedicine.medscape.com/article/815523-overview#showall<br>PubChem – Lithium: http://pubchem.ncbi.nlm.nih.gov/compound/3028194<br>IUPHAR/BPS – Guide to Pharmacology: Li+<br>http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?tab=summary&ligandId=5212
DOI: 10.6084/m9.figshare.1281223.v1
title: Data-LST-PLOS ONE

description: the folder contains the data for the paper " Fusion of MODIS and Landsat-8 Surface Temperature Images: A New Approach"
DOI: 10.6084/m9.figshare.1281248.v1
title: The Human Skin dsDNA Virome: Topographical and Temporal Diversity, Genetic Enrichment, and Dynamic Associations with the Host Microbiome

description: Viruses comprise a major component of the human microbiota, but are poorly understood in the skin, our primary barrier to the external environment. Viral communities have the potential to modulate states of cutaneous health and disease. Bacteriophages are known to influence the structure and function of microbial communities through predation and genetic exchange. Human viruses are associated with skin cancers and a multitude of cutaneous manifestations. Despite these important roles, little is known regarding the human skin virome and its interactions with the host microbiome. Here we evaluate the human cutaneous dsDNA virome by metagenomic sequencing of DNA from purified virus-like particles (VLPs). In parallel we employ metagenomic sequencing of the total skin microbiome to assess co-variation and infer interactions with the virome. Samples were collected from sixteen subjects at eight body sites over one month. In addition to microenviroment, which is known to partition bacterial and fungal microbiota, natural skin occlusion was strongly associated with skin virome community composition. Viral contigs were enriched for genes indicative of a temperate phage replication style, and also maintained genes encoding potential antibiotic resistance and virulence factors. CRISPR spacers identified in the bacterial DNA sequences provided a record of phage predation and suggest a mechanism to explain spatial partitioning of skin phage communities. Finally, we model the structure of bacterial and phage communities together to reveal a complex microbial environment with a Corynebacterium hub. These results reveal the previously underappreciated diversity, encoded functions, and viral-microbial dynamic unique to the human skin virome.
DOI: 10.6084/m9.figshare.1281222.v1
title: Lithium Database of Human Studies (version 1.0) --PubMed & ClinicalTrials.gov

description: Google SpreadSheet Open (URL below) --- Evidence has been cherry-picked,(1) a logical fallacy not exclusive to lithium.(2,3) This phenomenon is also frequently seen when the published evidence of many drugs (psychiatric and non-psychiatric active pharmacological principles) is weighted up against the hidden data of unpublished studies: <br>– Animal models and in vitro studies on isolated tissues, and cell cultures<br>– Pharmacokinetic and pharmacodynamic information<br>– Interventional human studies: clinical trials — e.g., controlled (randomized or non-randomized), single-arm (i.e., uncontrolled trials), cross-over, among other study designs. (read more: Circulation.2007; 115: 1164-1169).<br>– Observational epidemiological studies (e.g., case-control, cohort, cross-sectional).<br>– Other types of pharmacological evidence.(3) 2. Lithium have one of the narrowest therapeutic index among drugs approved into the market by regulatory agencies (e.g., FDA, EMA, INVIMA, among others).(1, 4-6) <strong>References</strong> Ramirez, Jorge H (2014): Lithium Database of Human Studies (version 1.0) –PubMed & ClinicalTrials.gov. figshare.<br>http://dx.doi.org/10.6084/m9.figshare.1281222<br>— Google SpreadSheet Database: https://docs.google.com/spreadsheets/d/1XMKsggpf1ViFzfVo8qY47kJYT5H4zzDP-LUIilFjkrc/edit#gid=1390342057<br>Ramirez, Jorge H (2015): Evidence Live 2015: Analysis of US phase 3 ClinicalTrials.gov records completed before January 1st, 2011 (n=5051; time frame: 2002 to 2014). figshare. http://dx.doi.org/10.6084/m9.figshare.1286769<br>Re: Are clinical trial data shared sufficiently today? No BMJ 2013; 347<br>http://www.bmj.com/content/347/bmj.f1880/rr/763200<br>Lithium Toxicity: http://emedicine.medscape.com/article/815523-overview#showall<br>PubChem – Lithium: http://pubchem.ncbi.nlm.nih.gov/compound/3028194<br>IUPHAR/BPS – Guide to Pharmacology: Li+<br>http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?tab=summary&ligandId=5212
DOI: 10.6084/m9.figshare.1281172
title: The Geology of The basement Formation at Mufulira Mine

description: The copper mineralisation at Mufulira mine is largely influenced by the structural geology of the underlying basement formation. i was investigating the possible association between the basement formation and the distribution of mineralisation in the overlying units. this was largely done through mapping, loggin of diamond core, assaying and petrographic analysis of the basement units and the overlying ore bearing units.
DOI: 10.6084/m9.figshare.1281141
title: Global funders who require data archiving as a condition of grants

description: Open access and open data are becoming more prominent on the global research agenda. Funders are increasingly requiring grantees to deposit their raw research data in appropriate public archives or stores in order to facilitate the validation of results and further work by other researchers. While the rise of open access has fundamentally changed the academic publishing landscape, the policies around data are reigniting the conversation around what universities can and should be doing to protect the assets generated at their institution. The main difference between an open access and open data policy is that there is not already a precedent or status quo of how academia deals with the dissemination of research that is not in the form of a traditional ‘paper’ publication. As governments and funders of research see the benefit of open content, the creation of recommendations, mandates and enforcement of mandates are coming thick and fast.
DOI: 10.6084/m9.figshare.1281143
title: Bulk Domain Names (28-Dec-2014) -- varocarbas.com

description: (28-Dec-2014) 2354881 valid web domain names collected by the (bulk) crawling bots running on varocarbas.com.
DOI: 10.6084/m9.figshare.1281248.v2
title: The Human Skin dsDNA Virome: Topographical and Temporal Diversity, Genetic Enrichment, and Dynamic Associations with the Host Microbiome

description: Viruses comprise a major component of the human microbiota, but are poorly understood in the skin, our primary barrier to the external environment. Viral communities have the potential to modulate states of cutaneous health and disease. Bacteriophages are known to influence the structure and function of microbial communities through predation and genetic exchange. Human viruses are associated with skin cancers and a multitude of cutaneous manifestations. Despite these important roles, little is known regarding the human skin virome and its interactions with the host microbiome. Here we evaluate the human cutaneous dsDNA virome by metagenomic sequencing of DNA from purified virus-like particles (VLPs). In parallel we employ metagenomic sequencing of the total skin microbiome to assess co-variation and infer interactions with the virome. Samples were collected from sixteen subjects at eight body sites over one month. In addition to microenviroment, which is known to partition bacterial and fungal microbiota, natural skin occlusion was strongly associated with skin virome community composition. Viral contigs were enriched for genes indicative of a temperate phage replication style, and also maintained genes encoding potential antibiotic resistance and virulence factors. CRISPR spacers identified in the bacterial DNA sequences provided a record of phage predation and suggest a mechanism to explain spatial partitioning of skin phage communities. Finally, we model the structure of bacterial and phage communities together to reveal a complex microbial environment with a Corynebacterium hub. These results reveal the previously underappreciated diversity, encoded functions, and viral-microbial dynamic unique to the human skin virome.
DOI: 10.6084/m9.figshare.1281143.v1
title: Bulk Domain Names (28-Dec-2014) -- varocarbas.com

description: (28-Dec-2014) 2354881 valid web domain names collected by the (bulk) crawling bots running on varocarbas.com.
DOI: 10.6084/m9.figshare.1281120
title: LTSTM data from May 2004

description: This is low temperature STM data from May 2004.
DOI: 10.6084/m9.figshare.1281107
title: Speak Bitterness Twitter Chorus

description: Textual presentation of Speak Bitterness twitter activity. Source data at https://doi.org/10.6084/m9.figshare.1281098 Live version in link below
DOI: 10.6084/m9.figshare.1281120.v1
title: LTSTM data from May 2004

description: This is low temperature STM data from May 2004.
DOI: 10.6084/m9.figshare.1281098
title: Speak Bitterness Twitter Capture

description: Performance of "Speak Bitterness" by Forced Entertainment, Hebbel am Ufer, Berlin, 18 October 2014 Raw tweets captured using the hashtag filter #fespeaklive
DOI: 10.6084/m9.figshare.1281094
title: Quizoola24 Twitter Capture

description: Performance of "Quizoola24!" by Forced Entertainment, 22 Nov 2014, Millenium Muesum, Sheffield. Raw tweets captured over the period 21 Nov - 23 Nov 2014, filtered using the hashtags #quizoola24 and #quizoola
DOI: 10.6084/m9.figshare.1281097
title: Quizoola24 Twitter Chorus

description: Textual presentation of all tweets. Source data from: https://doi.org/10.6084/m9.figshare.1281094 Live version in link below.
DOI: 10.6084/m9.figshare.1281084
title: Unpublished ClinicalTrials.gov pregabalin studies = 58% (76 out of 131 study records)

description: Unpublished pregabalin studies = 58% (76 out of 131 ClinicalTrials.gov records)*<br><em>* Completed before January 2011</em> Ramirez, Jorge H (2014): Pregabalin & Gabapentin - #OpenData. figshare.
DOI: 10.6084/m9.figshare.1281061
title: Investigation of Interslice Magnetization Transfer Effects as a New Method for MTR Imaging of the Human Brain

description: Dataset for manuscript submitted to PLOS ONE titled "Investigation of Interslice Magnetization Transfer Effects as a New Method for MTR Imaging of the Human Brain".
DOI: 10.6084/m9.figshare.1281098.v2
title: Speak Bitterness Twitter Capture

description: Performance of "Speak Bitterness" by Forced Entertainment, Hebbel am Ufer, Berlin, 18 October 2014 Raw tweets captured using the hashtag filter #fespeaklive
DOI: 10.6084/m9.figshare.1281061.v1
title: Investigation of Interslice Magnetization Transfer Effects as a New Method for MTR Imaging of the Human Brain

description: Dataset for manuscript submitted to PLOS ONE titled "Investigation of Interslice Magnetization Transfer Effects as a New Method for MTR Imaging of the Human Brain".
DOI: 10.6084/m9.figshare.1281098.v1
title: Speak Bitterness Twitter Capture

description: Performance of "Speak Bitterness" by Forced Entertainment, Hebbel am Ufer, Berlin, 18 October 2014 Raw tweets captured using the hashtag filter #fespeaklive
DOI: 10.6084/m9.figshare.1281007
title: Ph.D. Comprehensive Exam

description: Ph.D. Comprehensive Exam Electrical and Computer Engineering Department McMaster University Date: December 4th, 2014. The exam consists of 4 undergraduate-level questions, covering the areas of computer architecture, digital signal processing, digital communication, and electromagnetics, as well as 3 graduate-level questions, covering the areas of fiber optic communication, probability and stochastic processes, and data compression.
DOI: 10.6084/m9.figshare.1281058
title: LTSTM data from April 2004

description: This is low temperature STM data from April 2004.
DOI: 10.6084/m9.figshare.1281007.v1
title: Ph.D. Comprehensive Exam

description: Ph.D. Comprehensive Exam Electrical and Computer Engineering Department McMaster University Date: December 4th, 2014. The exam consists of 4 undergraduate-level questions, covering the areas of computer architecture, digital signal processing, digital communication, and electromagnetics, as well as 3 graduate-level questions, covering the areas of fiber optic communication, probability and stochastic processes, and data compression.
DOI: 10.6084/m9.figshare.1281058.v1
title: LTSTM data from April 2004

description: This is low temperature STM data from April 2004.
DOI: 10.6084/m9.figshare.1280951
title: Ecodesign referencial teórico e analise de conteúdo: proposta inicial para estudos futuros

description: O objetivo deste artigo é realizar um estudo da literatura de forma estruturada a respeito do tema<br>ecodesign. Para tanto foi utilizada uma metodologia de três estágios (Planejamento, Execução e<br>Relato). No planejamento considerou-se: definição do objetivo da pesquisa e identificação das fontes de dados; intervalo de tempo utilizado; Critérios para seleção das bases de dados; teste das bases e; definição do tipo de publicação. A execução consiste em todas as etapas a partir da busca nas bases e usos dos critérios para se chegar a uma amostragem final de 132 artigos que tratam deste tema. O relato diz respeito à análise bibliométrica realizada nos artigos. Com todos estes procedimentos propostos pretende-se ao final demonstrar meios para o pesquisador tratar do tema que assim desejar, neste caso o ecodesign e, também ajudar a identificar gaps ainda não explorados neste tema.