cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.801077.v5
title: Aboobaker Lab Schmidtea mediterranea transcriptome dataset

description: This fileset contains data associated with the consolidated Schmidtea mediterranea transcriptome. The publication associated with this fileset is currently under review. This transcriptome was consolidated using 5 independently assembled transcriptomes: -Blythe MJ, Kao D, Malla S, Rowsell J, Wilson R, et al. (2010) A Dual Platform Approach to Transcript Discovery for the Planarian Schmidtea Mediterranea to Establish RNAseq for Stem Cell and Regeneration Biology. PLoS ONE 5(12): e15617. doi:10.1371/journal.pone.0015617 -Catherine Adamidi, Yongbo Wang, Dominic Gruen, et al. (2011) De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics. Genome Research 2011. doi:10.1101/gr.113779.110 -Thomas Sandmann, Matthias C Vogg, Suthira Owlarn, et al. (2011) The head-regeneration transcriptome of the planarian Schmidtea mediterranea. Genome Biology 2011, 12:R76 doi:10.1186/gb-2011-12-8-r76 -Resch AM, Palakodeti D, Lu Y-C, Horowitz M, Graveley BR (2012) Transcriptome Analysis Reveals Strain-Specific and Conserved Stemness Genes in Schmidtea mediterranea. PLoS ONE 7(4): e34447. doi:10.1371/journal.pone.0034447 -Labbé, R. M., Irimia, M., Currie, K. W., Lin, A., Zhu, S. J., Brown, D. D.R., Ross, E. J., Voisin, V., Bader, G. D., Blencowe, B. J. and Pearson, B. J. (2012), A Comparative Transcriptomic Analysis Reveals Conserved Features of Stem Cell Pluripotency in Planarians and Mammals. STEM CELLS, 30: 1734–1745. doi: 10.1002/stem.1144 The following files are included in this fileset: OX_smed_1.0.fa - transcriptome sequences in fasta format. OX_smed_1.0.blast - cleaned blast results for transcriptome. Hits to hypotheticals or unknowns are filtered out. OX_smed_1.0.go - Gene ontology results for transcriptome. OX_smed_1.0.pfam - PFAM HMM-A scan results for transcriptome. OX_smed_1.0.tf - Potential transcription factors found in the transcriptome using DBD transcription factor database. OX_smed_1.0.source - The source transcripts/EST that made up each consolidated transcript. OX_Gtig_0.1.fa - G. tigrina transcriptome assembled from Roche 454 reads. Supp01-08 - Supplemental files for publication in submission.
DOI: 10.17632/frj7sv7f85
title: MOH, PHI, and PHM Spatial Boundaries of Puttalam District, Sri Lanka

description: This dataset contains spatial boundary data for Medical Officer of Health (MOH), Public Health Inspector (PHI), and Public Health Midwife (PHM) areas within the Puttalam District, Sri Lanka, as of 10th March 2025. Provided in shapefile format (SHP) and KML format (for Google Earth), it is suitable for geospatial analysis, mapping, and public health research. The data supports public health planning and resource allocation, epidemiological studies on disease distribution, and GIS applications for spatial visualization and decision-making. PDF versions of the maps are also included for easy reference. The dataset is compatible with geospatial tools.
DOI: 10.6084/m9.figshare.19160918.v1
title: EMG of stroke patients

description: The file includes raw EMG signals of stroke patients when performing hand-to-nose movement. Ten muscle activities are measured during the movements, triceps brachii long and lateral head (TLO and TLA), latissimus dorsi (LAT), pectoralis major (PEC), deltoid anterior, medial, and posterior (DEA, DEM, and DEP), trapezius upper (TRA), biceps brachii (BIC), and brachioradialis (BRA). And each subject continuously repeated the movement three times.
DOI: 10.6084/m9.figshare.28416860.v1
title: <b>Distribution prediction of the habitat of Jingmen tick virus in China</b><b>Distribution prediction of the habitat of Jingmen tick virus in China</b>

description: JMTV_rawdata_en.xlsx is our original dataset for jmtv distribution prediction.Tick.tif is an image of ticks collected in Guizhou Province, China.Jmtv-dec-segment1.tif is the gel electrophoresis image we used the primers of jmtv segment 1 to detect whether ticks carry jmtv.Jmtv-dec-segment2.tif is a gel electrophoresis image that we used the primers of jmtv segment 2 to verify the jmtv carrying ticks.
DOI: 10.6084/m9.figshare.27088186.v1
title: Chromosome-level genome assembly and transcriptome analysis of Chinese wingnut provides insights into its genome evolution and the gene regulation of starch and sucrose metabolism in wingnut

description: <i>Pterocarya stenoptera</i> belongs to the walnut family (Juglandaceae), is an ecologically important, wind pollinated, woody deciduous tree<i>. </i>We assembled a high-quality, chromosome-level de novo genome of <i>P. stenoptera. </i>The genome size was 555.2 Mb, with a scaffold N50 size of 28.82 Mb.
DOI: 10.17632/j39vyvp8ny
title: Imaging the retinal and choroidal vasculature using Spatio-Temporal Optical Coherence Tomography (STOC-T)

description: Spatio-Temporal Optical Coherence Tomography (STOC-T) is a novel imaging technique using light with controlled spatial and temporal coherence. Retinal images obtained using the STOC-T system maintain high resolution in all three dimensions, on a sample of about 700 μm, without the need for mechanical scanning. In the present work, we use known data processing algorithms for optical coherence tomography angiography (OCTA) and modify them to improve the rendering of the vasculature in the human retina at different depths by introducing the angio STOC-T method. The algorithms are primarily sensitive to the strong signal phase variance corresponding to the appearance of a wide Doppler band in STOC-T signals obtained for millisecond exposure times. After using STOC-T angiography, we can render high contrast images of the choroid.
DOI: 10.17632/jymf63zccx
title: Spatter Coupons

description: This dataset contains the in-process data collected from a print of 6 spatter-contaminated coupons, printed using a Renishaw AM500Q machine. The data has been downsampled to 25kHz. The lower half of all 6 coupons was printed using spatter-contaminated powder from a large spatter-producing block printed upwind of the gas flow. This block was switched off for the upper half, so the coupons were printed with fresh powder. The dataset is intended to be used for the development of in-situ monitoring data analysis methods that are capable of identifying spatter using just the on-axis photodiode within the machine. The porosity for each of the samples was extracted by CT, and is also available.

This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No 956401.
DOI: 10.6084/m9.figshare.19641777.v1
title: PROCESSED DATA .nc (NetCDF Files)

description: This dataset is a processed data in NetCDF (.nc) files, that used in our study. We used the SPI to determine meteorological drought conditions in the study area, that calculated by using the open-source module Climate and Drought Indices in Python.
DOI: 10.6084/m9.figshare.23301881.v1
title: EVBattery: A Large-Scale Electric Vehicle Dataset for Battery Health and Capacity Estimation

description: Electric vehicles (EVs) play an important role in reducing carbon emissions. As EV adoption accelerates, safety issues caused by EV batteries have become an important research topic. In order to benchmark and develop data-driven methods for this task, we introduce a large and comprehensive dataset of EV batteries. Our dataset includes charging records collected from hundreds of EVs from three manufacturers over several years. <br> Meanwhile, our dataset features two types of labels, corresponding to two key tasks - battery health estimation and battery capacity estimation. We hope that this public dataset provides valuable resources for researchers, policymakers, and industry professionals to better understand the dynamics of EV battery aging and support the transition toward a sustainable transportation system.
DOI: 10.6084/m9.figshare.23823496.v1
title: The interaction of macrophages and CD8 T cells in bronchoalveolar lavage fluid is associated with latent tuberculosis infection

description: Mycobacterium tuberculosis (Mtb) infection, including active tuberculosis (TB) and latent Mtb infection (LTBI), leads to diverse outcomes owing to different host immune responses. However, the immune mechanisms that govern the progression from LTBI to TB remain poorly defined in humans. Here, we profiled the lung immune cell populations within the bronchoalveolar lavage fluid (BALF) from patients with LTBI or TB using single-cell RNA sequencing (scRNA-seq). We found that Mtb infection substantially changed the immune cell compartments in the BALF, especially for the three subsets of macrophages, monocyte macrophage (MM)-CCL23, MM-FCN1, and MM-SPP1, which were found to be associated with the disease status of TB infection. Notably, MM-CCL23 cells derived from monocytes after stimulation with Mtb were characterized by high levels of chemokine (<i>CCL23</i> and <i>CXCL5</i>) production and might serve as a marker for Mtb infection. The MM-CCL23 population mainly recruited CD8-CCR6 T cells through CCL20/CCR6, which was a prominent feature associated with protection immunity in LTBI. This study improves our understanding of the lung immune landscape during Mtb infection, which may inform future vaccine design for protective immunity.
DOI: 10.6084/m9.figshare.29069330.v1
title: Ecological impacts of climate change and ecological adaptation

description: Ecological impacts of climate change and ecological adaptation
DOI: 10.17028/rd.lboro.6969806.v1
title: 100uL Mould LS

description: Mould for the creation of tissue engineered skeletal muscle in 100uL construct volumes. To be 3D printed using Laser Sintering (LS).<br>
DOI: 10.17632/83g4khjzs6
title: Data for: The evolution of terrestrial latitudinal temperature gradient from the latest Cretaceous through the Present

description: The global marine/terrestrial temperature data from different proxies were collected for the latest Cretaceous (~72-66 Ma), Late Paleocene-Early Eocene (~60-48 Ma), Early Oligocene (~34-28 Ma), and Pliocene (5.3-2.6 Ma). The terrestrial proxies include plant fossils, membrane lipids from soils (MBT/CBT), δ18O of tooth enamel, and clumped isotopes (Δ47) of inorganic and organic carbonates. The marine proxies include membrane lipids of marine sediments (TEX86), UK’37, the Mg/Ca of planktonic foraminifera, clumped isotopes (Δ47) of shell carbonates, and the δ18O of diverse fossils, including fish tooth enamel (phosphate), mollusk shells and fish otoliths (aragonite), exceptionally well-preserved planktonic foraminifera (calcite), and well-preserved rudists and other mollusks (calcite).
DOI: 10.17632/pfgpvykyym
title: NMR dataset for indole alkaloids isolated from Brucea javanica extract

description: This dataset describes the characterization of six indole alkaloids isolated from Brucea javanica extract. For each compound, one-dimensional (1H and 13C) and two-dimensional NMR (COSY, HMBC, HMQC) are provided.
DOI: 10.17632/yg3fmrfdb7
title: The particle size distribution data of ultrafine potassium bicarbonate and ammonium dihydrogen phosphate particles.

description: In this work, we developed an improved method, namely bubble-assisted freeze-dissolving in antisolvent (B-FDas), which enhances the production of ultrafine particles in two systems: potassium bicarbonate and ammonium dihydrogen phosphate. This improvement is achieved by introducing a continuous stream of bubbles during the freeze-dissolving process. The initial concentration of the particles ranged from 0.02 g/g to 0.10 g/g, and the volume of the frozen ice particles varied from 0.01 to 0.08 cm3. The tables presented herein illustrate the particle size distribution of the two types of particles under different conditions, including comparisons between different methods, the same volume but different concentrations, and the same concentration but different volumes.
DOI: 10.6084/m9.figshare.12213749.v2
title: Association between latent toxoplasmosis and fertility parameters of men

description: We studied the prevalence of toxoplasmosis in men with fertility disorders and fertile controls and investigated the possible effect of <i>Toxoplasma</i> infection on semen volume, sperm number, motility, and morphology. The dataset contains variables age, toxoplasma examination results, type of pathology, semen volume, sperm concentration, total sperm count, concentration of progressively motile sperm, concentration of non-progressively motile sperm, concentration of immotile sperm, percentage of sperms with normal form and proportion of progressively motile sperm. It also contains data for testing of <i>Toxoplasma</i> prevalence in groups of men with different types of disorders and averaged sperm parameters in men with more than one sperm analysis.
DOI: 10.6084/m9.figshare.19521970.v1
title: Maximum stand density index for the United States

description: Maximum stand density index estimates for all US Forest Service, Forest Inventory & Analysis plots in the continental United States.
DOI: 10.6084/m9.figshare.23544741.v1
title: IRBP HGT trees

description: Full phylogenetic reanalyses of Dataset S2 and S3 from Kalluraya et al. 2023, PNAS. <br> Kalluraya_S2.fas_JTTC50FIG4.contree: Consensus tree and full ultrafast bootstrap supports inferred under best-fitting JTT+C50+F+I+G4 model for Dataset S2 from Kalluraya et al. <br> Kalluraya_S3.fas_EXEHOG4.contree: Consensus tree and full ultrafast bootstrap supports inferred under best-fitting EX_EHO+G4 model for Dataset S3 from Kalluraya et al..
DOI: 10.6084/m9.figshare.27280872.v1
title: butadiene.xyz

description: butadiene molecule
DOI: 10.6084/m9.figshare.28969595.v1
title: Baza danych na rok 2018 oraz 2023 dla powiatu łańcuckiego

description: Baza danych na rok 2018 oraz 2023 dla powiatu łańcuckiego
DOI: 10.17632/pxbdbwtvw2
title: Data for: Binge-viewing, escapism and immersion in the narrative world: The effect of media consumption on travel intentions

description: We used different scales and self-developed scales to study media consumption, escapism, media immersion and travel intention to the filming location. The research aimed to analyse the impact of the Game of Thrones TV-series on viewers' travel intentions.
DOI: 10.17632/sbjnsv2shj
title: SAT: A free software for semi-automated analysis of rodent brain slices with TTC staining

description: Including the software of SAT and a movie of guideline of the sofeware.
DOI: 10.6084/m9.figshare.28051373.v2
title: Supplemental Files

description: Raw transcriptomic sequencing data from AGS cell lines with stable BNC1 overexpression
DOI: 10.6084/m9.figshare.28782260.v1
title: Assessing Temporal Causal Effects of Climate on Dengue Incidence in Peninsular Malaysia

description: This study explores how climate factors specifically temperature, humidity, and rainfall, affect dengue cases in Peninsular Malaysia. Using data from 2013 to 2020, we applied time-series methods to understand both delayed (lagged) and immediate effects of climate on dengue outbreaks. A Vector Autoregressive (VAR) model showed that past dengue cases and temperature four months earlier influenced current case numbers. Granger causality analysis confirmed that temperature can predict future dengue trends, while humidity and rainfall did not show strong temporal effects. However, all three climate factors showed strong immediate impacts on dengue incidence. The findings highlight the importance of temperature in both predicting and responding to dengue outbreaks, supporting its inclusion in early warning systems.
DOI: 10.17632/3spfk55nk2
title: Coded & edited data

description: The study is driven to understand the factors influencing teacher educators to unable to use ICT tools in their classroom practices. Plenty of studies have previously investigated and are being investigated, too on the same. The government has been vigorously trying to implement ICT into teaching for decades but still focusing on the affective factors shows the unintentional failure of effective implementation of the policies. Therefore, the author is motivated to examine the functional barriers affecting the effective implementation of ICT in the teaching-learning process at the teacher-education level. Therefore, this research emerged with the following questions, 1). Does the inadequate ICT infrastructure significantly hampers the ICT integration in teacher education classroom in the Pondicherry region? 2). Does lack of training significantly hinders the effective integration of ICT into teacher education classroom in the Pondicherry region? 3). Does, negative attitude towards technology among teachers significantly hinder the practical adoption of ICT in teacher education? 4). Does lack of institutional leaders support significantly hinders effective ICT integration in the teacher education classroom still in this digital era. Effective, implementation of anything, such as policies, methodologies, etc., are in the hands of teachers because teachers are the ground-level workers. Hence, the study employed teacher educators as the sample, derived from the population of teacher educators working in both Government and Private teacher education institutions in the Pondicherry region. The population of the study is 120. Since the study is a census in nature, all the 120 teacher educators working in the teacher education institutions considered as a sample. This study conducted descriptive survey under the quantitative research method to lead the study. The researcher developed a survey tool to gather the data from the selected sample. The survey questionnaire consisted of 12 items in four significant factors affecting integrating ICT in classroom teaching.
DOI: 10.6084/m9.figshare.17212307.v1
title: penicillins

description: Archive of penicillins containing sub-folders named after each compound and its net charge. Every compound's folder contains a total of 20 files distributed into three sub-directories reporting QM (QM/), FF (FF/), and MD (MD/) data.
DOI: 10.6084/m9.figshare.21397254.v2
title: Haniffa

description: Processed input data for ScRAT from Muzlifah Haniffa's datasets. For original h5ad please see https://covid19.cog.sanger.ac.uk/submissions/release1/haniffa21.processed.h5ad
DOI: 10.6084/m9.figshare.21836589.v4
title: Dataset 1.000 images DPChallenge

description: This file contains 1.000 available images collected in 2012 DPChallenge in the dataset https://figshare.com/articles/dataset/DPChallenge_Aesthetic_Dataset/6127295/1. It has the evaluations of groups of humans (DPChallenge, Spain and USA) and the metrics given by computational systems (BRISQUE, NIMA, Diffusion Aesthetics and PhotoILike).
DOI: 10.6084/m9.figshare.21915585.v1
title: Egg weights.xlsx

description: SAS data for MSc trial Egg production Egg quality Mn Zn Cu Organic source Inorganic source
DOI: 10.6084/m9.figshare.26793379.v1
title: <b>Chromosome-level genome assembly and annotation of</b><b> pawak croaker</b><b> (</b><b><i>Pennahia pawak</i></b><b>)</b>

description: Files of chromosome assembly, genome annotation and software settings for the manuscript entitled “ <b>Chromosome-level genome assembly and annotation of pawak croaker (</b><b><i>Pennahia pawak</i></b><b>)</b> ”
DOI: 10.17632/2fcyxgk77f
title: The exploratory dataset of isotopic composition of different water sources across Kazakhstan.

description: The presented dataset contains results of stable water isotope composition of water samples collected during 2017-2023 across Kazakhstan with one lake sample from Kyrgyzstan (Issyk-kul Lake). The dataset has the oxygen and hydrogen isotopic ratios (δ2H and δ18O) expressed in per mil (‰) after normalization of raw measurements with international accepted reference standards (i.e VSMOW2 and SLAP2) along with measurements error reported as one standard deviation. The dataset (n=399) consist of following water source types: precipitation (n=130) - event precipitation (n=108), monthly cumulative (n=22); surface water (n=175) – rivers (n=69), brooks (n=19), channels (n=7), lakes (n=78), reservoirs (n=2); groundwater (n=85) - shallow groundwater (n=76), artesian (free-flowing) groundwater (n=8), a spring (n=1); tap water (n=9. The Excel spreadsheet containing data has five tabs: 1) Precipitation events; 2) Precipitation monthly; 3) Surface water; 4) Groundwater; 5) Tap water. The tabs have the following columns: Sample no, Sample ID, Sample type, Sample subtype, Event type (for event precipitation), Sample description, Date, Location, Coordinate 1, (Lat N), Coordinate 2, (Lon E), Comment, Measurement method, δ18O, ‰, 1σ (standard deviation for oxygen), δ2H, ‰, 1σ (standard deviation for hydrogen).
DOI: 10.17632/h5cp7s67h2
title: Preliminary dataset for enhancing biomass productivity using chemical modulators in Synechococcus elongatus PCC 7942

description: This dataset contains preliminary investigations on using chemical modulators for enhancing biomass productivity of Synechococcus elongatus PCC 7942. The analysis showed that some of the modulators could be effective biomass triggers and can act at very low concentrations (20 - 1000 nM). Moreover, a basic economic feasibility also indicated some potential modulators that could be carried forward. The dataset could potentially be useful for targeted algal farming, especially for biomass.
DOI: 10.17632/jbxghh27fh
title: Data for: 3270500

description: This interview study investigates how managers/associates of a failed distributed large-scale Research Infrastructures perceived their brand and the role mindsharing played in light of the organisation’s ultimate failure. Specifically, the study looks at BioBanking and Molecular Resource Infrastructure in Sweden (BBMRI.se), an organisation that involved collaboration between several medical and technical universities and sought to harmonise biobanking in Sweden. The aim was to discern the respondents’ degree of mindsharing in regards to their perception of the organisational brand. The four stages the branding process investigated were: Brand Strategic Analysis, Brand Identity, Brand Operationalising, and Post-Implementation Reflections. The results indicated that the mindsharing was present at the initial two stages, but dissipated throughout the ensuing two final stages, resulting in a fragmented brand perception, thereby forgoing the ability of generating a “pull-effect” for the BBMRI.se brand. The study’s implication is for branding to account more for social and individual motivations and less for instrumental motivations, e.g. mission statements.
DOI: 10.6084/m9.figshare.16924132.v1
title: DepMap 21Q4 Public

description: This DepMap release contains data from CRISPR knockout screens from project Achilles, as well as genomic characterization data from the CCLE project.<br>For more information, please see README.txt.
DOI: 10.6084/m9.figshare.27612528.v2
title: The data and code of "Groundwater Quality Evolution Across China"

description: This repository contains the main code and source data used in the analysis and modeling for our paper, "Groundwater Quality Evolution Across China", submitted to Nature Communications.