cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34847/nkl.45eakn6s
title: PACEA Histology - Histological details

description: Histological details on teeth thin section from PACEA Histological Collection
description: Capreolus capreolus_P2_Lower-Left_Actual_Longitudinal cut_Obj10X_Natural light_Root apex
description: Capreolus capreolus_P2_Lower-Left_Actual_Longitudinal cut_Obj50X_Natural light_Cross section of tubules
description: Capreolus capreolus_P2_Lower-Left_Actual_Longitudinal cut_Obj20X_Natural light_Interradicular cellular cementum
description: Capreolus capreolus_P2_Lower-Left_Actual_Longitudinal cut_Obj50X_Natural light_Osteocytes and canalicules
description: Capreolus capreolus_P2_Lower-Left_Actual_Longitudinal cut_Obj20X_Natural light_Alveolar bone
description: Capreolus capreolus_P2_Lower-Left_Actual_Longitudinal cut_Obj50X_Natural light_Alveolar bone (detail)
description: Capreolus capreolus_P2_Lower-Left_Actual_Longitudinal cut_Obj10X_Natural light_Peripheral enamel
description: Capreolus capreolus_P2_Lower-Left_Actual_Longitudinal cut_Obj50X_Natural light_Altered enamel and prisms
description: Capreolus capreolus_P2_Lower-Left_Actual_Longitudinal cut_Obj10X_Natural light_Root neck
description: Capreolus capreolus_P2_Lower-Left_Actual_Longitudinal cut_Obj50X_Natural light_Root neck (detail)
description: Capreolus capreolus_P2_Lower-Left_Actual_Longitudinal cut_Obj10X_Natural light_Acellular cementum
description: Capreolus capreolus_P2_Lower-Left_Actual_Longitudinal cut_Obj50X_Polarised light with lambda plate_Osteons
DOI: 10.15468/dl.36hjh6
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "Geometry POLYGON((76.35718 28.8827,80.83998 28.8827,80.83998 32.38538,76.35718 32.38538,76.35718 28.8827))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aconitum heterophyllum Wall. ex Royle"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076757-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34847/nkl.45ed61fz
title: Ruta PY09, Animita (1)
DOI: 10.5281/zenodo.15756205
title: Gene regulatory network analysis of somatic embryogenesis identifies morphogenic genes that increase maize transformation frequency

description: Somatic embryogenesis allows a somatic plant cell to develop into an embryo, and potentially into a fertile plant. Transcription factors such as BABY BOOM can induce somatic embryogenesis when ectopically expressed and are widely used for aiding regeneration in tissue culture for transformation and gene editing of crops. Nevertheless, regeneration remains a bottleneck and alternative morphogenic genes are highly desired. Here, we co-expressed BABY BOOM and WUSCHEL2 in zygotic maize (Zea mays L.) embryos and studied gene regulatory networks in induced somatic embryos at the single-cell level. By inferring cell-type-specific regulons, we prioritized candidate regulators and confirmed functionality of four transcription factors, bHLH48, EREB152, GRF4, and HB77, for enhanced maize transformation frequency, leading to fertile, transgenic plants. Interestingly, the basic helix-loop-helix and homeodomain-leucine zipper families had previously not been associated with induced somatic embryogenesis. Our work will contribute to more efficient transformation, much needed to deliver on the promise of gene editing for agriculture.

The provided files inlude:



mini-ex__input__priors.zip: list of priors used to perform MINI-EX runs

mini-ex__input__seurat.zip: scRNA-seq related inputs extracted from the Seurat object for the MINI-EX runs

mini-ex__output.zip: outputs provided by MINI-EX for the eight priors
DOI: 10.15468/dl.2fc2du
title: Occurrence Download

description: A dataset containing 1312610 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Alnus lanata Duthie ex Bean, Alnus rhombifolia Nutt., Alnus oblongifolia Torr., Alnus lusitanica Vít, Douda & Mandák, Alnus sieboldiana Matsum., Alnus serrulata (Aiton) Willd., Alnus trabeculosa Hand.-Mazz., Alnus glutipes (Jarm. ex Czerpek) Vorosch., Alnus subcordata C.A.Mey., Alnus firma Siebold & Zucc., Alnus alnobetula (Ehrh.) K.Koch, Alnus formosana (Burkill) Makino, Alnus ferdinandi-coburgii C.K.Schneid., Alnus henryi C.K.Schneid., Alnus nepalensis D.Don, Alnus serrulatoides Callier, Alnus rohlenae Vít, Douda & Mandák, Alnus maritima (Marshall) Muhl. ex Nutt., Alnus glutinosa (L.) Gaertn., Alnus cremastogyne Burkill, Alnus matsumurae Callier, Alnus vermicularis Nakai, Alnus orientalis Decne., Alnus fauriei H.Lév. & Vaniot, Alnus djavanshirii H.Zare, Alnus cordata (Loisel.) Duby, Alnus jorullensis Kunth, Alnus incana (L.) Moench, Alnus hakkodensis Hayashi, Alnus nitida (Spach) Endl., Alnus japonica (Thunb.) Steud., Alnus acuminata Kunth, Alnus dolichocarpa H.Zare, Amini & Assadi, Alnus maximowiczii Callier, Alnus pendula Matsum., Alnus hirsuta (Spach) Rupr., Alnus rubra Bong.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1312610 records from 3248 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076747-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.82144/57ac4875
title: NEFSC Survey 1998 2

description: Original provider:
NOAA Northeast Fisheries Science Center (NEFSC)

Dataset credits:
NOAA Northeast Fisheries Science Center (NEFSC)

Abstract:
The survey was performed on the R/V Abel-J from 6 July to 4 August 1998 (Leg I), and from 8 August to 6 September 1998 (Leg II) starting and ending in Woods Hole, Massachusetts. The study areas in Leg I and Leg II, respectively, were from Cape Cod, Massachusetts to Virginia, and from Cape Cod, Massachusetts to Halifax, Nova Scotia, Canada. Both study areas extended from the 100 m depth contour to the Gulf Stream.
DOI: 10.82144/a255b66b
title: NEFSC Survey 1998 1

description: Original provider:
NOAA Northeast Fisheries Science Center (NEFSC)

Dataset credits:
NOAA Northeast Fisheries Science Center (NEFSC)

Abstract:
The survey was performed on the R/V Abel-J from 6 July to 4 August 1998 (Leg I), and from 8 August to 6 September 1998 (Leg II) starting and ending in Woods Hole, Massachusetts. The study areas in Leg I and Leg II, respectively, were from Cape Cod. Massachusetts to Virginia, and from Cape Cod, Massachusetts to Halifax, Nova Scotia, Canada. Both study areas extended from the 100 m depth contour to the Gulf Stream.
DOI: 10.15468/pecqmb
title: The occurrence of Bruguiera hainesii C.G.Rogers 1919 in Vietnam

description: Bruguiera hainesii has small flowers, usually clustered in groups of 2–3 on a single inflorescence. The flowers predominantly bloom from January to March and it is uncommon to encounter a tree bearing fruit. The average height of the individuals is 15 m, with a trunk diameter of 84 cm. This species has a distinctive aerial root system, which helps the tree resist erosion and stabilises the soil. The aerial roots typically develop robustly, forming a network of secondary roots that rise above the ground and water, aiding in oxygen absorption in the muddy environment.In Vietnam, this species primarily grows in mangrove forests on a small island (Hon Ba Island, part of the Con Dao Natural Park, Ba Ria-Vung Tau province). The habitat of Bruguiera hainesii here is characterised by saline water, partially submerged by tides, with seasonal variations in seawater levels. The mangrove forests where Bruguiera hainesii thrives are noted for their soft, thick mud layer and frequent inundation. The trees often grow in shallow water areas where there is an exchange of water between the sea and the land.Bruguiera hainesii is categorised as "Critically Endangered" by the IUCN Red List (Duke et al. 2010). This species has a very restricted distribution, found in Con Dao, Vietnam and a few neighbouring countries, such as Thailand, Malaysia, Singapore, Indonesia and Australia (GBIF). The conservation status of the species in Vietnam faces significant challenges, primarily due to the absence of fruiting in recent years, the lack of observed regenerating seedlings and the species' exposure to declining area and quality of habitat in mangrove forests. The main threats to this species include coastal erosion, sea level changes due to climate change and the expansion of tourism activities in the mangrove areas, which places additional pressure on its habitat.
DOI: 10.15468/dl.6uqs7j
title: Occurrence Download

description: A dataset listing the 1307 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Registros biológicos de especies de plantas del Bosque Seco en Colombia presentes en el Herbario JBGP"
 ]
}

 The dataset's 1307 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002533-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28574180
title: Comparison of different anchoring methods for seagrass (<i>Posidonia oceanica</i>) restoration

description: This two-year study evaluates the feasibility and effectiveness of various anchoring techniques for restoration with <i>Posidonia oceanica</i> using uprooted adult shoots, integrating ecological success with feasibility to identify optimal methodologies. Experiments were conducted in two bays in Mallorca characterized by historical <i>P. oceanica</i> presence. Four anchoring methods; big staples, small staples, bamboo sticks and calcite pegs, were tested using fragments with plagiotropic rhizomes
DOI: 10.6084/m9.figshare.28574180.v1
title: Comparison of different anchoring methods for seagrass (<i>Posidonia oceanica</i>) restoration

description: This two-year study evaluates the feasibility and effectiveness of various anchoring techniques for restoration with <i>Posidonia oceanica</i> using uprooted adult shoots, integrating ecological success with feasibility to identify optimal methodologies. Experiments were conducted in two bays in Mallorca characterized by historical <i>P. oceanica</i> presence. Four anchoring methods; big staples, small staples, bamboo sticks and calcite pegs, were tested using fragments with plagiotropic rhizomes
DOI: 10.15468/dl.f2mxun
title: Occurrence Download

description: A dataset containing 972 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Italy",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Calopteryx haemorrhoidalis (Vander Linden, 1825)"
 ]
}

 The dataset includes 972 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002548-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17028/rd.lboro.28532291
title: Supplementary information files for "Identifying early help referrals for local authorities with machine learning and bias analysis."

description: Supplementary files for article "Identifying early help referrals for local authorities with machine learning and bias analysis."Local authorities in England, such as Leicestershire County Council (LCC), provide Early Help services that can be offered at any point in a young person’s life when they experience difficulties that cannot be supported by universal services alone, such as schools. This paper investigates the utilisation of machine learning (ML) to assist experts in identifying families that may need to be referred for Early Help assessment and support. LCC provided an anonymised dataset comprising 14 360 records of young people under the age of 18. The dataset was pre-processed, ML models were developed, and experiments were conducted to validate and test the performance of the models. Bias-mitigation techniques were applied to improve the fairness of these models. During testing, while the models demonstrated the capability to identify young people requiring intervention or early help, they also produced a significant number of false positives, especially when constructed with imbalanced data, incorrectly identifying individuals who most likely did not need an Early Help referral. This paper empirically explores the suitability of data-driven ML models for identifying young people who may require Early Help services and discusses their appropriateness and limitations for this task.© The Author(s),. CC BY 4.0<br>
DOI: 10.17028/rd.lboro.28532291.v1
title: Supplementary information files for "Identifying early help referrals for local authorities with machine learning and bias analysis."

description: Supplementary files for article "Identifying early help referrals for local authorities with machine learning and bias analysis."Local authorities in England, such as Leicestershire County Council (LCC), provide Early Help services that can be offered at any point in a young person’s life when they experience difficulties that cannot be supported by universal services alone, such as schools. This paper investigates the utilisation of machine learning (ML) to assist experts in identifying families that may need to be referred for Early Help assessment and support. LCC provided an anonymised dataset comprising 14 360 records of young people under the age of 18. The dataset was pre-processed, ML models were developed, and experiments were conducted to validate and test the performance of the models. Bias-mitigation techniques were applied to improve the fairness of these models. During testing, while the models demonstrated the capability to identify young people requiring intervention or early help, they also produced a significant number of false positives, especially when constructed with imbalanced data, incorrectly identifying individuals who most likely did not need an Early Help referral. This paper empirically explores the suitability of data-driven ML models for identifying young people who may require Early Help services and discusses their appropriateness and limitations for this task.© The Author(s),. CC BY 4.0<br>
DOI: 10.5281/zenodo.14982575
title: Data for "High-resolution global climate simulations: Representation of cities"

description: Data and analysis scripts for 

Hertwig D, Ng M, Grimmond S, Vidale PL, McGuire PC, 2021. High-resolution global climate simulations: Representation of cities. International Journal of Climatology 41, 3266–3285. https://doi.org/10.1002/joc.7018





Data archive overview in Hertwig_IJC_2021_HadGEM3_overview.xlsx

Decompress zipped data archives with:  $ tar -zxvf <archive>.tar.gz or 7-zip

Format of HadGEM3 model output: netCDF (.nc)
DOI: 10.5281/zenodo.14982576
title: Data for "High-resolution global climate simulations: Representation of cities"

description: Data and analysis scripts for 

Hertwig D, Ng M, Grimmond S, Vidale PL, McGuire PC, 2021. High-resolution global climate simulations: Representation of cities. International Journal of Climatology 41, 3266–3285. https://doi.org/10.1002/joc.7018





Data archive overview in Hertwig_IJC_2021_HadGEM3_overview.xlsx

Decompress zipped data archives with:  $ tar -zxvf <archive>.tar.gz or 7-zip

Format of HadGEM3 model output: netCDF (.nc)
DOI: 10.15468/dl.jy5h2f
title: Occurrence Download

description: A dataset listing the 164350 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "MediaType is Image",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset's 164350 records were derived from 152 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002522-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bf7myk
title: Occurrence Download

description: A dataset containing 2798 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "DatasetKey is INPN - Données flore des CBN agrégées par la FCBN",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sedum sexangulare L.",
 "Year 1990-2025"
 ]
}

 The dataset includes 2798 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002552-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.5295868
title: Philosophy [IO Islamic 2205] Glosses on الرسالة الشمسية

description: Philosophy.

This manuscript is now IO Islamic 2205 in the India Office collections.

[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 508 here with notations and hyperlinks].


508.

2205. Size 71/4 in. by 4 in. ; foll. 99. Fifteen Lines in a page.

Another copy of the same Glosses.

Neatly written in Nasta’lîḳ, with numerous notes. Fol. 75 should stand after 83, fol. 84 after 77, and fol. 99 after 95. The last fol. Is wanting.

Seal of Nuṣrat Jang.

 

[College of Fort William, 1825]
DOI: 10.5281/zenodo.5295869
title: Philosophy [IO Islamic 2205] Glosses on الرسالة الشمسية

description: Philosophy.

This manuscript is now IO Islamic 2205 in the India Office collections.

[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 508 here with notations and hyperlinks].


508.

2205. Size 71/4 in. by 4 in. ; foll. 99. Fifteen Lines in a page.

Another copy of the same Glosses.

Neatly written in Nasta’lîḳ, with numerous notes. Fol. 75 should stand after 83, fol. 84 after 77, and fol. 99 after 95. The last fol. Is wanting.

Seal of Nuṣrat Jang.

 

[College of Fort William, 1825]
DOI: 10.15468/dl.dhrpws
title: Occurrence Download

description: A dataset containing 152288 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Borago officinalis L."
 ]
}

 The dataset includes 152288 records from 989 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002504-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11090786
title: Supplementary material for "Demographic assessment of reintroduced bearded vultures in the Alps: success in the core, challenges in the periphery"

description: Abstract



 Regular assessment of reintroduced populations is essential to guide management and provide lessons for other reintroduction projects. Bearded vulture Gypaetus barbatus reintroduction in the Alps began in 1986 with the release of the first fledglings, the first successful reproduction was recorded in 1997, and the population has grown steadily since. A previous assessment suggested that no further releases would be required to establish a self-sustaining population from a demographic point of view. However, this conclusion was based on a small sample size and spatially homogeneous demographic rates of released individuals, which may differ from and be spatially variable among wild-hatched individuals.

Using longitudinal data and breeding site survey data, we constructed an integrated population model to examine the demography of the entire Alpine population, spatially stratified into a core and a periphery. We performed retrospective population analyses to identify demographic reasons of spatial differences in population growth, and conducted population viability analyses to assess the impact of future threats and reintroduction options.

In 2021, an estimated 173 (CRI: 149-199) females were present in the Alps, of which 65 (CRI: 63-67) were breeders. Adult survival and productivity were higher in the core than in the periphery, so the population grew more strongly in the core than in the periphery. Differences in adult survival contributed most to the differences in population growth between the two areas.

The population viability analysis predicts that the Alpine population will double in 10 years but that an increase in the mortality hazard above 0.055 will lead to a population decline. Unlike the population in the core, the population in the periphery is dependent on further releases at this stage.

Bearded vulture reintroductions in the Alps have succeeded in creating a self-sustaining population with higher reproductive success and similar survival probabilities to the autochthonous Pyrenean population. In general, management should focus on preventing further mortality risks. In the periphery, reducing current mortality and increasing reproductive success are essential to make the population independent of releases.


 

Readme

Data files and code for all analyses and figures presented in the paper. The two data files are provided in csv format (SightingData.csv, OccupancyData.csv). There are five code files written for R, but some the main analysis requires software JAGS. The main code (IPM_Code.txt) contains a description of the data, code for loading and managing the data, and for fitting the integrated population model. The other files contain custom written functions (Functions.txt), code for the density dependence test (DensityDependence_Code.txt), code for the retrospective analyses (tLTRE_Code.txt) and code for miscellaneous statistics and figure generation (Figure_Code.txt).
DOI: 10.58132/0k9xf5
title: Identifying heavy neutrinos at lepton colliders

description: Dataset contains data related to the study of the prospects for identifying the nature of the heavy neutral lepton (heavy neutrino) in future lepton collider experiments described in the publication "Discriminating Majorana and Dirac heavy neutrinos at lepton colliders" published in J. High Energ. Phys. 2024, 75 (2024).This research was part of the project "Realistic simulations of exotic processes at future e+e- colliders" funded by National Science Centre, Poland, under grant agreement nr 2021/43/B/ST2/01778.MethodologyThe study was based on large event samples of different particle scattering processes, which can be observed at future lepton collider experiments. Considered collider projects are International Linear Collider (ILC) running at 250 GeV, 500 GeV and 1 TeV centre-of-mass energy, Compact Linear Collider (CLIC) running at 3 TeV, and Muon Collider (MuC) running at 3 TeV and 10 TeV. Samples were generated with the WHIZARD program. Considered signal process of heavy neutral lepton production was simulated according to the HeavyN model. Outputs from the WHIZARD program (lists of produced particles with their parameters) were then processed with the DELPHES framework to model detector performance for considered experiments. Event samples from detector simulation were stored in root format.Signal samples used for the analysis are too large to be stored. Included in the dataset are example control scripts of the WHIZARD program which can be used to reproduce them. These are "pseudo-data" reflecting our current assumptions about how the future lepton collider experiment will perform. Also included are final numerical results on the analysis: expected 95% CL exclusion limits, expected 95% CL discrimination range between two neutrino nature hypotheses: Dirac and Majorana, and 5 σ discovery range.Files:example WHIZARD scripts for generating signal samples for production of heavy neutrino at ILC, CLIC and MuC,CSV files with final analysis results: expected exclusion limits on the heavy neutrino coupling parameter V2lN as a function of its mass, 95% CL discrimination limits between Dirac and Majorana netrino, and expected 5 σ discovery range.PDF and PNG files of the figures showing these limits (Fig. 1 and Fig. 5 from the paper).Software tools usedHeavyN model webpage: https://feynrules.irmp.ucl.ac.be/wiki/HeavyNWHIZARD Event Generator web page: https://whizard.hepforge.org/DELPHES: https://github.com/delphes/delphes