cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.56asyb
title: Occurrence Download

description: A dataset containing 461 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ficus lyrata Warb."
 ]
}

 The dataset includes 461 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073712-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2mkasl
title: Occurrence Download

description: A dataset containing 942 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alnus Mill.",
 {
 "or" : [
 "Country is Uruguay",
 "Country is Chile",
 "Country is Paraguay",
 "Country is Colombia",
 "Country is Bolivia (Plurinational State of)",
 "Country is Venezuela (Bolivarian Republic of)",
 "Country is Brazil",
 "Country is Argentina",
 "Country is Guyana",
 "Country is Peru",
 "Country is Ecuador",
 "Country is French Guiana",
 "Country is Suriname"
 ]
 }
 ]
}

 The dataset includes 942 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001181-150805223722583/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ss77de
title: Occurrence Download

description: A dataset containing 510 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Glycine max (L.) Merr.",
 "Year 1000-2021"
 ]
}

 The dataset includes 510 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0249122-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9pz964
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-92.14723 -0.75579,-55.85277 -0.75579,-55.85277 13.75579,-92.14723 13.75579,-92.14723 -0.75579))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Caluromys lanatus cicur (Bangs, 1898)"
 ]
}

 The dataset includes 29 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0318282-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dbfu5z
title: Occurrence Download

description: A dataset containing 240 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Typhlichthys subterraneus Girard, 1859)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 240 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052187-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oqo73u
title: Occurrence Download

description: A dataset containing 139 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pyrrhura orcesi Ridgely & Robbins, 1988"
 ]
}

 The dataset includes 139 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007657-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bqqf4k
title: Occurrence Download

description: A dataset containing 232 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cynomys mexicanus Merriam, 1892",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 232 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001181-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.23j4fm
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Literature Occurrence"
 ]
 },
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Salvelinus fontinalis (Mitchill, 1814)"
 ]
}

 The dataset includes 37 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0250988-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.krhrc9
title: Occurrence Download

description: A dataset containing 365 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pteronemobius lineolatus (Brullé, 1835)"
 ]
}

 The dataset includes 365 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024621-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1n2j50
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brachytarsophrys feae (Boulenger, 1887)"
 ]
}

 The dataset includes 80 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001182-150811131857512/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jqm7yb
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coenonympha oedippus oedippus"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071517-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qhddez
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Distribution of Aureoboletus projectellus in Europe"
 ]
}

 The dataset includes 52 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015533-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.skmjy6
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.30_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aedes albopictus (Skuse, 1894)"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036245-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9kzzu4
title: Occurrence Download

description: A dataset containing 355 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dromiciops gliroides Thomas, 1894"
 ]
}

 The dataset includes 355 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001182-150912100344238/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xtc24h
title: Occurrence Download

description: A dataset containing 1561 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Convention GTM Bâtiment et le Service du patrimoine naturel du MNHN-Données d'expertise convention GTM Bâtiment et le Service du patrimoine naturel du MNHN"
 ]
}

 The dataset includes 1561 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0232447-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rhyu0n
title: Occurrence Download

description: A dataset containing 4042 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Astrocaryum faranae F.Kahn & E.Ferreira",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4042 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007658-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.saksx2
title: Occurrence Download

description: A dataset containing 68862 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bryum argenteum Hedw."
 ]
}

 The dataset includes 68862 records from 542 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0177693-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3g5ft6
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Trigonisca dobzhanskyi (Moure, 1950)"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092593-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.plrezv
title: Occurrence Download

description: A dataset containing 9792752 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "Year 1960-2020",
 "HasCoordinate is true",
 "TaxonKey is Aves",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 9792752 records from 855 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015027-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2jranp
title: Occurrence Download

description: A dataset containing 159 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pluteus exiguus (Pat.) Sacc.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 159 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0249604-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pr5bck
title: Occurrence Download

description: A dataset containing 2030 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is one of (Tanzania, United Republic of, Uganda, Kenya, Congo, Democratic Republic of the)",
 "OccurrenceStatus is Present",
 "TaxonKey is Aedes aegypti (Linnaeus, 1762)"
 ]
}

 The dataset includes 2030 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097816-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-56046
title: Redemption tidings, vol. 37, nos. 1-52, 1 Jan. - 22 Dec. 1961

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.tl4h7g
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "License is CC-BY 4.0",
 "TaxonKey is Niviventer confucianus (Milne-Edwards, 1871)"
 ]
}

 The dataset includes 45 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017180-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.apayfc
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ompok supernus Ng, 2008"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0322370-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w3kgpw
title: Occurrence Download

description: A dataset containing 1127 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Aves de San Andrés y Providencia - Expedición Sea Flower Plus 2021"
 ]
}

 The dataset includes 1127 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038168-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7lbvzw
title: Occurrence Download

description: A dataset containing 6108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hibbertia aspera DC.",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6108 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045568-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bfemqr
title: Occurrence Download

description: A dataset containing 6703 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lycopodium complanatum L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6703 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010063-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-55635
title: Redemption tidings, vol. 36, nos. 1-52, 1 Jan. - 23 Dec. 1960

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.mkarph
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Trigonisca nataliae (Moure, 1950)"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092596-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ngl7q0
title: Occurrence Download

description: A dataset containing 1128753 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Sweden",
 "Country is Denmark",
 "Country is Belgium",
 "Country is Norway",
 "Country is Finland",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Country is Netherlands",
 "Country is France",
 "Country is Germany",
 "Country is Spain"
 ]
 },
 "Year 1990-2020",
 "HasCoordinate is true",
 "TaxonKey is Accipiter nisus (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1128753 records from 611 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017173-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/one-ouc17550643
title: Mattachine Society, correspondence, Dwight "B.D." Huggins (1956-1957)
DOI: 10.25549/one-ouc17554650
title: Mattachine Society, Police-Community Relations, San Francisco (1967)
DOI: 10.6084/m9.figshare.16544095
title: Additional file 1 of Anterior reduction and C1-ring osteosynthesis with Jefferson-fracture reduction plate (JeRP) via transoral approach for unstable atlas fractures

description: Additional file 1.
DOI: 10.25549/one-ouc17554651
title: Mattachine Society, Police-Community Relations, San Francisco (1967)
DOI: 10.25549/one-ouc17555904
title: Mattachine Society, Long Beach (Harbor) Area Council correspondence and memoranda (1953-1956)
DOI: 10.25549/one-ouc17556010
title: Mattachine Society, Long Beach (Harbor) Area Council correspondence and memoranda (1953-1956)
DOI: 10.25549/one-ouc17556011
title: Mattachine Society, Long Beach (Harbor) area council meeting minutes (1954-1955)
DOI: 10.25549/one-ouc17555905
title: Mattachine Society, Tavern Guild (1964-1967)
DOI: 10.57745/8u8xmw
title: suptable6_hmr_dmr_cond_lrfi.bed

description: Genomic coordinates of the differentially methylated regions between fasted and fed LRFI pigs.
DOI: 10.57745/spd2xj
title: suptable7_hmr_dmr_cond_hrfi.bed

description: Genomic coordinates of the differentially methylated regions between fasted and fed HRFI pigs.
DOI: 10.57745/hd2uym
title: suptable2_gene_expressions_TPM.tab

description: Gene expression in Transcript per million, used for visualisations.
DOI: 10.57745/lxkaoc
title: suptable3_gene_expressions_pseudocounts_lengthScaledTPM.tab

description: Gene expression in pseudo-counts (length-scaled TPM), used differential analysis.
DOI: 10.57745/mf5rbw
title: suptable8_hmr_dmr_line_deg_annotated.tab

description: Line DMRs within 20kb of a differentially expressed gene between LRFI and HRFI pigs.
DOI: 10.57745/rcri0u
title: suptable5_hmr_dmr_line.bed

description: Genomic coordinates of the differentially methylated regions between lines.
DOI: 10.57745/x4s34y
title: suptable4_differentially_expressed_genes.tab

description: Results of the differential gene expression analysis.
DOI: 10.25549/one-ouc17555491
title: Mattachine Society, Long Beach (Harbor) Area Council correspondence and memoranda (1953-1956)
DOI: 10.57745/03rutv
title: suptable9_hmr_dmr_lrfi_deg_annotated.tab

description: Fasted vs fed LRFI DMRs within 20kb of a differentially expressed gene between fasted and fed LRFI pigs.
DOI: 10.57745/fzmuvm
title: suptable1_samples_metadata.tab

description: Sample metadata.
DOI: 10.57745/ul1i1w
title: sup_fig1.png

description: Supplementary figure 1: Low DNA methylation at the promoter of expressed genes. In each MeDP-seq sample, we sorted genes according to expression levels from their corresponding RNA-seq sample, from top (high expression) to bottom (low expression). Genes were binned in three groups of equal size : light green (high expression), dark green (low to no expression), and purple (no expression). For each gene, DNA methylation ratio is represented in the -2.5kb +2.5kb window surrounding their Transcription Start Site (TSS). Bottom panels display the expression values in each bin of genes, as well as their average DNA methylation ratio around TSS. A. LRFI samples in the fasted condition. B. LRFI samples in the fed condition (one sample failed during library preparation). C. HRFI samples in the fasted condition. D. HRFI samples in the fed condition.
DOI: 10.25549/one-ouc17555906
title: Mattachine Society, Long Beach (Harbor) Area Council correspondence and memoranda (1953-1956)
DOI: 10.25549/one-ouc17555494
title: Mattachine Society, Long Beach (Harbor) Area Council correspondence and memoranda (1953-1956)
DOI: 10.25549/one-ouc17555908
title: Mattachine Society, Long Beach (Harbor) Area Council correspondence and memoranda (1953-1956)
DOI: 10.25549/one-ouc17556012
title: Mattachine Society, Long Beach (Harbor) area council constitution and bylaws (1953-1954)
DOI: 10.5281/zenodo.10667056
title: Dataset related to article "Unveiling the HER2-low phenomenon: exploring immunohistochemistry and gene expression to characterise HR-positive HER2-negative early breast cancer "

description: This record contains raw data related to article “Unveiling the HER2-low phenomenon: exploring immunohistochemistry and gene expression to characterise HR-positive HER2-negative early breast cancer "

Abstract



 Purpose:  HER2-low breast cancer (BC) is a novel entity with relevant therapeutic implications, especially in hormone receptor (HR) positive BC. This study examines whether HER2 mRNA through the 21-gene assay, Oncotype DX (ODX), can refine the diagnosis of HER2-low and HER2-zero, obtained by immunohistochemistry (IHC).

 Methods:  Between Jan 2021 and Jan 2023, 229 consecutive HR-positive HER2-negative early BC (T1-3 N0-1) have been characterised by IHC and ODX. HER2 status by IHC was either zero (IHC-0) or low (IHC-1 + and IHC-2 + /ISH-negative) while HER2-zero was further divided into HER2-null (IHC-0) and HER2-ultralow (IHC-1-10%). HER2 gene expression by ODX was negative if lower 10.7.

 Results:  The distribution of HER2 IHC was as follows: 53.3% HER2-0, 29.25% HER2-1 + , and 17.5% HER2-2 + . The clinicopathological characteristics were similar in the three groups, with higher PgR-negative rate in HER2-zero (13.9% vs 3% vs 5%). The distribution of RS was homogeneous in the three groups with the median HER2 gene expression of 9.20 [IQR: 8.70-9.60]. HER2 gene expression gradually increased as the IHC score, with substantial overlap. After adjusting for confounders, HER2-1 + and HER2 2 + had a significant positive correlation between HER2 gene expression and IHC [OR 1.42, 95% CI 1.21 to 1.68, p < 0.001; OR 1.96, 95% CI 1.61 to 2.37, p < 0.001] compared to the HER2-zero group. HER2 gene expression did not differ between HER2-null and HER2-ultralow subgroups.

 Conclusion:  Due to the substantial overlap, the HER2 gene expression is unable to properly distinguish HER2-low and HER2-zero IHC whose accurate identification is critical in the context of HER2-negative BC.