cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.bj5kg4
title: Occurrence Download

description: A dataset containing 9161 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stipa tenacissima L."
 ]
}

 The dataset includes 9161 records from 106 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0324309-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b4thqv
title: Occurrence Download

description: A dataset containing 16901 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Teucrium capitatum L."
 ]
}

 The dataset includes 16901 records from 162 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0324319-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fmkcjc
title: Occurrence Download

description: A dataset containing 1225 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Teucrium carolipaui Vicioso ex Pau"
 ]
}

 The dataset includes 1225 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0339812-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.necyex
title: Occurrence Download

description: A dataset containing 239 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Teucrium freynii E.Rev. ex Willk."
 ]
}

 The dataset includes 239 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0324323-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bn6kya
title: Occurrence Download

description: A dataset containing 15802 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thymelaea hirsuta (L.) Endl."
 ]
}

 The dataset includes 15802 records from 172 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0324329-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wtvf3z
title: Occurrence Download

description: A dataset containing 255 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Teucrium lanigerum Lag."
 ]
}

 The dataset includes 255 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0324325-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sqcry7
title: Occurrence Download

description: A dataset containing 52355 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thymus hyemalis Lange"
 ]
}

 The dataset includes 52355 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0324336-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15724239
title: Science Communication of Brazilian Software Engineering Research on LinkedIn (Research Artifacts)
DOI: 10.5281/zenodo.15724240
title: Science Communication of Brazilian Software Engineering Research on LinkedIn (Research Artifacts)
DOI: 10.5281/zenodo.14989732
title: TFBIcomp_repro_pack_p2

description: Reproducibility pack for Thermal Farley-Buneman Instability paper by the people listed as creators and contributors here. (Paper officially published to ApJ on June 3, 2025; see: https://doi.org/10.3847/1538-4357/adcd70.) This repro pack (combined with data from the original pack, see below) is sufficient to generate all plots and some (all?) computed values (discussed in the text of the paper) in the second submitted version of our paper.

This pack provides additional data, and a new Jupyter notebook. To use this repro pack, first download and follow installation instructions from the original TFBIcomp_repro_pack (https://doi.org/10.5281/zenodo.13935288). Then, run the new Jupyter notebook (from ...pack_p2) instead of the notebook from the original repro_pack.

More detailed description is available within the TFBIcomp_repro_pack.

See data_README.txt for detailed descriptions of the data contents within TFBIcomp_repro_pack_p2.

The plots_output_reference here shows the plots created when we ran the code here (after following the installation instructions above). Note that there is one plot missing from that folder due to a typo (commented-out the "savefig" command for the plot) however a version of the plot is visible within the Jupyter notebook. The missing plot is named "2d_density 2b_3a_3b.png". If you un-comment the savefig command and rerun the cell, that plot should be generated appropriately.
DOI: 10.5281/zenodo.14989733
title: TFBIcomp_repro_pack_p2

description: Reproducibility pack for Thermal Farley-Buneman Instability paper by the people listed as creators and contributors here. (Paper officially published to ApJ on June 3, 2025; see: https://doi.org/10.3847/1538-4357/adcd70.) This repro pack (combined with data from the original pack, see below) is sufficient to generate all plots and some (all?) computed values (discussed in the text of the paper) in the second submitted version of our paper.

This pack provides additional data, and a new Jupyter notebook. To use this repro pack, first download and follow installation instructions from the original TFBIcomp_repro_pack (https://doi.org/10.5281/zenodo.13935288). Then, run the new Jupyter notebook (from ...pack_p2) instead of the notebook from the original repro_pack.

More detailed description is available within the TFBIcomp_repro_pack.

See data_README.txt for detailed descriptions of the data contents within TFBIcomp_repro_pack_p2.

The plots_output_reference here shows the plots created when we ran the code here (after following the installation instructions above). Note that there is one plot missing from that folder due to a typo (commented-out the "savefig" command for the plot) however a version of the plot is visible within the Jupyter notebook. The missing plot is named "2d_density 2b_3a_3b.png". If you un-comment the savefig command and rerun the cell, that plot should be generated appropriately.
DOI: 10.5281/zenodo.15683434
title: Evaluating Search Quality and Article Choice in Evidence-Based Medicine Assignments of Preclinical Students

description: This dataset accompanies an upcoming article.

Background: This study aims to determine if the quality of literature searches is correlated with the quality of article selection in a whole-task Evidence-Based Medicine (EBM) assignment for preclinical medical students.

Case presentation: A capstone assignment was implemented for first-year medical students after a curriculum-integrated EBM course. In this assignment, students were given a clinical scenario and asked to report all EBM steps. For this project, we assessed their search strategy and article selection, which were scored using a rubric (1-4 scale). Spearman’s rank correlation coefficient was used to assess the relationship between these two variables. Eighty-two students completed the assignment. Fifty-nine percent received a score of 3 for their search strategy, while 77% received a score of 4 for article selection. Spearman’s rank correlation coefficient was 0.19 (p-value = 0.086).
DOI: 10.5281/zenodo.15683435
title: Evaluating Search Quality and Article Choice in Evidence-Based Medicine Assignments of Preclinical Students

description: This dataset accompanies an upcoming article.

Background: This study aims to determine if the quality of literature searches is correlated with the quality of article selection in a whole-task Evidence-Based Medicine (EBM) assignment for preclinical medical students.

Case presentation: A capstone assignment was implemented for first-year medical students after a curriculum-integrated EBM course. In this assignment, students were given a clinical scenario and asked to report all EBM steps. For this project, we assessed their search strategy and article selection, which were scored using a rubric (1-4 scale). Spearman’s rank correlation coefficient was used to assess the relationship between these two variables. Eighty-two students completed the assignment. Fifty-nine percent received a score of 3 for their search strategy, while 77% received a score of 4 for article selection. Spearman’s rank correlation coefficient was 0.19 (p-value = 0.086).
DOI: 10.5281/zenodo.13935186
title: TFBIcomp_repro_pack_3D_data

description: Subsampled versions of the 3D runs from Thermal Farley-Buneman Instability paper by the people listed as creators and contributors here. These runs are referred to as EPPIC-3a and EPPIC-3b in the paper. (Paper officially published to ApJ on June 3, 2025; see: https://doi.org/10.3847/1538-4357/adcd70.)

The data here is fully optional; all relevant plots and computed values in the paper should be created from the other relevant repro packs, without ever needing to download the TFBIcomp_repro_pack_3D_data. We thus provide little-to-no direct instructions on how to read or investigate the data here. The README.txt provides some description of the file contents. Each folder (EPPIC-3a.zip and EPPIC-3b.zip) is the output of a single EPPIC run. If you are interested in using this data, consider using PlasmaCalcs and following examples from the TFBIcomp_repro_pack. Also feel free to reach out to the authors with any questions.

See also:



(https://doi.org/10.5281/zenodo.13935288) which contains the original repro pack, for the first submitted version of our paper. It also contains a version of PlasmaCalcs and the code used to generate plots in the paper.

(https://doi.org/10.5281/zenodo.14989733) which contains an updated repro pack, for the second submitted version of our paper.

Updated versions of PlasmaCalcs:



installable via pip install PlasmaCalcs: pypi.org/project/PlasmaCalcs

most recent version of PlasmaCalcs: gitlab.com/Sevans7/plasmacalcs
DOI: 10.5281/zenodo.13935187
title: TFBIcomp_repro_pack_3D_data

description: Subsampled versions of the 3D runs from Thermal Farley-Buneman Instability paper by the people listed as creators and contributors here. These runs are referred to as EPPIC-3a and EPPIC-3b in the paper. (Paper officially published to ApJ on June 3, 2025; see: https://doi.org/10.3847/1538-4357/adcd70.)

The data here is fully optional; all relevant plots and computed values in the paper should be created from the other relevant repro packs, without ever needing to download the TFBIcomp_repro_pack_3D_data. We thus provide little-to-no direct instructions on how to read or investigate the data here. The README.txt provides some description of the file contents. Each folder (EPPIC-3a.zip and EPPIC-3b.zip) is the output of a single EPPIC run. If you are interested in using this data, consider using PlasmaCalcs and following examples from the TFBIcomp_repro_pack. Also feel free to reach out to the authors with any questions.

See also:



(https://doi.org/10.5281/zenodo.13935288) which contains the original repro pack, for the first submitted version of our paper. It also contains a version of PlasmaCalcs and the code used to generate plots in the paper.

(https://doi.org/10.5281/zenodo.14989733) which contains an updated repro pack, for the second submitted version of our paper.

Updated versions of PlasmaCalcs:



installable via pip install PlasmaCalcs: pypi.org/project/PlasmaCalcs

most recent version of PlasmaCalcs: gitlab.com/Sevans7/plasmacalcs
DOI: 10.5281/zenodo.15724120
title: Sequence alignments for: Pylogenomic insights and recircumscription of the perennial endemic North American clade of Apiaceae (Apioideae, Selineae)
DOI: 10.5281/zenodo.15724121
title: Sequence alignments for: Pylogenomic insights and recircumscription of the perennial endemic North American clade of Apiaceae (Apioideae, Selineae)
DOI: 10.6084/m9.figshare.29042975.v1
title: Genotype VCFs for single-cell dataset demultiplexing

description: VCF genotypes of Duan_024, Duan_025, Duan_029, and Duan_030 libraries
DOI: 10.15468/dl.8wq3gk
title: Occurrence Download

description: A dataset containing 588 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Sus scrofa Linnaeus, 1758"
 ]
}

 The dataset includes 588 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065981-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t7r2ue
title: Occurrence Download

description: A dataset containing 701 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Phrynosoma asio Cope, 1864"
 ]
}

 The dataset includes 701 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065991-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6x83yd
title: Occurrence Download

description: A dataset containing 3315 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "TaxonKey is one of (Ulex europaeus L., Ulex europaeus L.)"
 ]
}

 The dataset includes 3315 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065985-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.enw8r7
title: Occurrence Download

description: A dataset containing 701 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Phrynosoma asio Cope, 1864"
 ]
}

 The dataset includes 701 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065988-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.njmgd3
title: Occurrence Download

description: A dataset containing 6779 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Clanga pomarina (C.L.Brehm, 1831)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 6779 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065975-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g522c2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Frustulia L.Rabenhorst, 1853",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((20.529 -24.0715,20.509 -24.0455,20.509 -24.0715,20.529 -24.0715))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065976-250525065834625/datasets/export for details.
DOI: 10.26093/cds/vizier.36790057
title: CRIRES-POP III. 10 Leo line identification

description: VizieR online Data Catalogue associated with article published in journal Astronomy and Astrophysics with title ' CRIRES-POP: A library of high resolution spectra in the near-infrared. III. Line identification in the K giant 10 Leo.' (bibcode: 2023A&A...679A..57Z)
DOI: 10.26093/cds/vizier.36870084
title: Core to UCHII region evolution in W49A

description: VizieR online Data Catalogue associated with article published in journal Astronomy and Astrophysics with title ' Core to ultracompact HII region evolution in the W49A massive protocluster.' (bibcode: 2024A&A...687A..84N)
DOI: 10.25345/c5ms3kd7z
title: MassIVE MSV000098287 - Metabolic barriers controlling root microbiota assembly
title: Plant roots are an essential plant organ, which is functionally related to nutrient and water uptake. These functions are conditioned by their morphology since water and nutrients infiltrate the root from the soil through different tissue layers to reach the central vasculature. We have revealed that microbial composition affects root morphology complexity. Importantly, we also found that the presence of the microbiota changes morphological traits in the root under low nutrient conditions, suggesting an unexplored coordination between root morphology complexity and microbial communities with consequences for plant health. Using Synthetic Communities (Syncom), we identified three bacteria that are capable of modifying plant root morphogenesis. So, in this experiment, we exposed duckweed plants to a bacterial Syncom as well as three alternative Syncoms, each of which excludedimportant bacteria. Additionally, we also exposed the plants to single bacteria. The work (proposal:https://doi.org/10.46936/10.25585/60012307) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.
DOI: 10.15468/dl.59u7gs
title: Occurrence Download

description: A dataset containing 3315 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "TaxonKey is one of (Ulex europaeus L., Ulex europaeus L.)"
 ]
}

 The dataset includes 3315 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065984-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vq3kcn
title: Occurrence Download

description: A dataset containing 990 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Clytospiza monteiri (Hartlaub, 1860)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 990 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065995-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dzehnz
title: Occurrence Download

description: A dataset containing 432 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "DatasetKey is Fauna asociada a plantaciones de palma de aceite en Guatemala",
 "OccurrenceStatus is Present",
 "Year 2022-2025"
 ]
}

 The dataset includes 432 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065979-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29042975
title: Genotype VCFs for single-cell dataset demultiplexing

description: VCF genotypes of Duan_024, Duan_025, Duan_029, and Duan_030 libraries
DOI: 10.25345/c5h12vm34
title: MassIVE MSV000098288 - The influence of nutrients on microbial interactions and secondary metabolites in toxic cyanobacterial blooms
title: We describe metabolomics from microbial communities of western Lake Erie, a valuable model system for the impacts of nutrient cycling and microbial interactions on cyanobacterial blooms and secondary metabolites in freshwater ecosystems. We will assess the role of associated bacteria and viruses in cycling nutrients, exchanging metabolites, and influencing secondary metabolite production of these cyanobacteria. The work (proposal:https://doi.org/10.46936/10.25585/60008110) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.
DOI: 10.6084/m9.figshare.29042975.v3
title: Genotype VCFs for single-cell dataset demultiplexing

description: VCF genotypes of Duan_024, Duan_025, Duan_029, and Duan_030 libraries
DOI: 10.6084/m9.figshare.29042975.v2
title: Genotype VCFs for single-cell dataset demultiplexing

description: VCF genotypes of Duan_024, Duan_025, Duan_029, and Duan_030 libraries
DOI: 10.25345/c57m04c6c
title: MassIVE MSV000098289 - Decoding the specificity between MCP chemotaxis receptors and root exudates of plants
title: 33 total samples. * 1 is seed exudates (30 sprouts in nutrient water, 24 hours, ~30 mL). * 28 are from EcoFabs (14, 15, 16 and 17 days with 7 total individual plant replicates, ~8-10 mL each) * 4 are from "magenta box" hydroponics plants grown to 42 days old (2 replicates) and 48 days old (2 replicates). All of them were collected in sterile nutrient water, replaced 24 hours before I harvested, filter sterilized and flash frozen. The work (proposal:https://doi.org/10.46936/10.25585/60008098) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.
DOI: 10.25345/c5c824t0v
title: MassIVE MSV000098290 - Heat sensitivity in the Antarctic green alga Chlamydomonas priscui
title: Chlamydomonas priscui (previously sp. UWO241) is a green alga isolated from the ice-covered Antarctic Lake Bonney, where it thrives in a permanently cold, low light and hypersaline environment. We propose a multi-omics approach to investigate how this obligate cold extremophile (psychrophile) responds to high temperature stress stress. We will examine the role of salinity and light intensity on temperature resilience in C. priscui. We have shown that C. priscuii acclimated to high salinity and low light (HS-LL; similar to its natural habitat) exhibits significantly slower rates of heat-induced cell death, when compared to cultures acclimated to predicted climate change conditions accompanied with increased light or decreased salinity. We will examine the molecular basis of this response. Algae will be grown photoautotrophically at 4°C with continuous light to mimic the polar day and acclimated to the four defined conditions, adjusting salinity and light. Mid-log phase cultures will be exposed to short-term stress at 24°C for 12h, followed by 24h recovery at 4°C. The work (proposal:https://doi.org/10.46936/10.25585/60008464) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.