cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14839479
title: Data from: More milkweed in farmlands containing small, annual crop fields and many hedgerows

description: See Martin et al. (2021, Agriculture, Ecosystems and Environment 319: 107567, https://doi.org/10.1016/j.agee.2021.107567) for full description of methods.<br>Abstract: Milkweed has declined substantially, with over 80% declines in some agricultural regions. This threatens monarch butterfly (<i>Danaus plexippus</i>) persistence, because monarch larvae feed solely on milkweed. Thus conservation actions are needed to enhance the availability of milkweed, particularly in agricultural landscapes. Conservation actions to date have largely focused on reducing intensive agricultural practices, mainly use of herbicides. However, research suggests that landscape-scale alteration of the cropped portion of an agricultural landscape (the "farmland"), for example, to reduce crop field sizes, can benefit herbaceous plants such as milkweed. Here we collected data on milkweed occurrence and cover in agricultural landscapes in Ontario, Canada, capturing variability in milkweed from field edge to interior by sampling in the interior and along the edges of 68 crop fields. We used these data to evaluate the relative effects of farming practices within the sampled field (e.g. herbicide, fertilizer use) on milkweed versus the effects of mean field size, crop diversity, hedgerow cover, and the proportion of farmland in annual crops in the surrounding landscape. Additionally, we evaluated the effects of these variables on the cover of other herbaceous plants, to identify which—if any—could benefit milkweed without increasing overall weed cover. We found more milkweed at sites surrounded by landscapes with smaller crop fields, lower crop diversity, and higher cover of annual crops. Milkweed was more likely to occur at sites surrounded by landscapes with more hedgerows. These landscape-scale effects on milkweed were often larger than those of within-field farming practices. Importantly, we found that most variables had opposite effects on milkweed relative to other plants. Thus, altering the landscape to benefit milkweed does not imply an increase in weed cover.<br>
DOI: 10.25345/c5382z
title: MassIVE MSV000087874 - Contrasting proteomic responses of adult and larval coral to high temperatures
title: Raw data (61,375 spectra) were processed into peak lists by Proteome Discoverer 1.4 and distilled into a single MGF data file with Mascot Distiller (ver. 2.6.0; Matrix Sciences). Please note that, because the samples represented a meta-proteome (anthozoans, dinoflagellates, and likely other microbial constituents), we queried three separate sequence databases (see methods in appended document.) and combined the results in the supplemental data file ("McRae et al. OSDF"). For this reason, individuals interested in our findings should consult this file rather than the mzid file. Please note that the associated article (McRae et al.) was issued minor revisions by reviewers and will hopefully be published in August of 2021.
DOI: 10.5281/zenodo.5128438
title: Fragalysis Example Data (Mpro)

description: An example of data that can be used when developing the fragalysis (https://fragalysis.diamond.ac.uk) codebase. The contents should be unzipped and placed into the data directories as described: https://github.com/xchem/fragalysis-frontend
DOI: 10.34810/data72/1217
title: 01AC_1.MR.0004.0089.2013.03.10.14.06.27.296875.165384942.IMA
DOI: 10.6085/aa/rkpx00_xxxitv2xlsr03_20200310.50.1
title: PISCO: Intertidal: site temperature data: Rocky Point, Oregon, USA (RKPX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Rocky Point, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2020-03-10. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10.0 minute intervals.
DOI: 10.34810/data72/1218
title: 01AC_1.MR.0004.0079.2013.03.10.14.06.27.296875.165384762.IMA
DOI: 10.6085/aa/rkpx00_xxxitv2xlsr03_20191002.50.1
title: PISCO: Intertidal: site temperature data: Rocky Point, Oregon, USA (RKPX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Rocky Point, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2019-10-02. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10.0 minute intervals.
DOI: 10.6085/aa/rkpx00_xxxitv2xlsr01_20191002.50.1
title: PISCO: Intertidal: site temperature data: Rocky Point, Oregon, USA (RKPX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Rocky Point, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2019-10-02. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10.0 minute intervals.
DOI: 10.6085/aa/rkpx00_xxxitv2xlsr01_20200310.50.1
title: PISCO: Intertidal: site temperature data: Rocky Point, Oregon, USA (RKPX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Rocky Point, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2020-03-10. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10.0 minute intervals.
DOI: 10.6085/aa/rkpx00_xxxitv2xlsr02_20191002.50.1
title: PISCO: Intertidal: site temperature data: Rocky Point, Oregon, USA (RKPX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Rocky Point, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2019-10-02. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10.0 minute intervals.
DOI: 10.6085/aa/rkpx00_xxxitv2xlsr02_20200310.50.1
title: PISCO: Intertidal: site temperature data: Rocky Point, Oregon, USA (RKPX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Rocky Point, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2020-03-10. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10.0 minute intervals.
DOI: 10.6073/pasta/e49701c3d68da8e7e486d8da362327da
title: Long-term monitoring of ground-dwelling arthropods in central Arizona-Phoenix, ongoing since 1998 (Reformatted to the ecocomDP Design Pattern)

description: This data package is formatted as an ecocomDP (Ecological Community Data Pattern). For more information on ecocomDP see https://github.com/EDIorg/ecocomDP. This Level 1 data package was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-cap/41/16. The abstract below was extracted from the Level 0 data package and is included for context: The Central Arizona–Phoenix Long-Term Ecological Research (CAP LTER) program has been monitoring ground-dwelling arthropods (e.g., insects, ararchnids) at locations throughout the greater Phoenix metropolitan area (GPMA) and surrounding Sonoran desert region since 1998. Monitoring locations span a diversity of habitat types, including mesic and xeric residential yards, commercial areas, agricultural fields, desert locations within the GPMA (desert remnant), and undisturbed desert locations. Organisms are collected quarterly using unbaited pitfall traps, typically ten per location but with some variation, exposed for approximately seventy-two hours. Organisms are identified to the lowest practical taxonomic level and enumerated. Many of the sampling locations established at the beginning of the monitoring project were relocated in 2001-2002 to overlap with the CAP LTER’s Ecological Survey of Central Arizona (ESCA; formerly named Survey200) long-term monitoring sites, although within the same general landscape categories.
DOI: 10.34810/data72/1219
title: 01AC_1.MR.0004.0042.2013.03.10.14.06.27.296875.165384096.IMA
DOI: 10.3886/e121121
title: Data and Code for: "Why Is Growth In Developing Countries So Hard To Measure?"

description: Occasional widely publicized controversies have led to the perception that growth statistics from developing countries are not to be trusted. Based on the comparison of several data sources and analysis of novel IMF audit data, we find no support for the view that growth is on average measured less accurately or manipulated more in developing than in developed countries. While developing countries face many challenges in measuring growth, so do higher-income countries, especially those with complex and sometimes rapidly changing economic structures. However, we find consistently higher dispersion of growth estimates from developing countries, lending support to the view that classical measurement error is more problematic in poorer countries and that a few outliers may have had a disproportionate effect on (mis)measurement perceptions. We identify several measurement challenges that are specific to poorer countries, namely limited statistical capacity, the use of outdated data and methods, the large share of the agricultural sector, the informal economy, and limited price data. We show that growth measurement based on the System of National Accounts (SNA) can be improved if supplemented with information from other data sources (e.g., satellite-based data on vegetation yields) that address some of the limitations of SNA.
DOI: 10.3886/e121121v1
title: Data and Code for: "Why Is Growth In Developing Countries So Hard To Measure?"

description: Occasional widely publicized controversies have led to the perception that growth statistics from developing countries are not to be trusted. Based on the comparison of several data sources and analysis of novel IMF audit data, we find no support for the view that growth is on average measured less accurately or manipulated more in developing than in developed countries. While developing countries face many challenges in measuring growth, so do higher-income countries, especially those with complex and sometimes rapidly changing economic structures. However, we find consistently higher dispersion of growth estimates from developing countries, lending support to the view that classical measurement error is more problematic in poorer countries and that a few outliers may have had a disproportionate effect on (mis)measurement perceptions. We identify several measurement challenges that are specific to poorer countries, namely limited statistical capacity, the use of outdated data and methods, the large share of the agricultural sector, the informal economy, and limited price data. We show that growth measurement based on the System of National Accounts (SNA) can be improved if supplemented with information from other data sources (e.g., satellite-based data on vegetation yields) that address some of the limitations of SNA.
DOI: 10.6084/m9.figshare.14599904
title: Earthquake Risk Embedded in Property Prices: Evidence From Five Japanese Cities

description: We analyze the impact of short-run (90 days) and long-run (30 years) earthquake risk on real estate transaction prices in five Japanese cities (Tokyo, Osaka, Nagoya, Fukuoka, and Sapporo), using quarterly data over the period 2006–2015. We exploit a rich panel dataset (331,343 observations) with property characteristics, ward attractiveness information, macroeconomic variables, and long-run seismic hazard data, supplemented with short-run earthquake probabilities generated from a seismic excitation model using historical earthquake occurrences. We design a hedonic property price model that allows for subjective probability weighting, employ a multivariate error components structure, and develop associated maximum likelihood estimation and variance computation procedures. Our approach enables us to identify the total compensation for earthquake risk embedded in property prices, to decompose this into pieces stemming from short-run and long-run risk, and to distinguish between objective and subjectively weighted (“distorted”) earthquake probabilities. We find that objective long-run earthquake probabilities have a statistically significant negative impact on property prices, whereas short-run earthquake probabilities become statistically significant only when we allow them to be distorted. The total compensation for earthquake risk amounts to an average –2.0% of log property prices, slightly more than the annual income of a middle-income Japanese household. Supplementary materials for this article, including a standardized description of the materials available for reproducing the work, are available as an online supplement.
DOI: 10.6085/aa/khlx00_xxxitv2xlsr01_20190928.40.1
title: (:unkn)
DOI: 10.6084/m9.figshare.14599904.v2
title: Earthquake Risk Embedded in Property Prices: Evidence From Five Japanese Cities

description: We analyze the impact of short-run (90 days) and long-run (30 years) earthquake risk on real estate transaction prices in five Japanese cities (Tokyo, Osaka, Nagoya, Fukuoka, and Sapporo), using quarterly data over the period 2006–2015. We exploit a rich panel dataset (331,343 observations) with property characteristics, ward attractiveness information, macroeconomic variables, and long-run seismic hazard data, supplemented with short-run earthquake probabilities generated from a seismic excitation model using historical earthquake occurrences. We design a hedonic property price model that allows for subjective probability weighting, employ a multivariate error components structure, and develop associated maximum likelihood estimation and variance computation procedures. Our approach enables us to identify the total compensation for earthquake risk embedded in property prices, to decompose this into pieces stemming from short-run and long-run risk, and to distinguish between objective and subjectively weighted (“distorted”) earthquake probabilities. We find that objective long-run earthquake probabilities have a statistically significant negative impact on property prices, whereas short-run earthquake probabilities become statistically significant only when we allow them to be distorted. The total compensation for earthquake risk amounts to an average –2.0% of log property prices, slightly more than the annual income of a middle-income Japanese household. Supplementary materials for this article, including a standardized description of the materials available for reproducing the work, are available as an online supplement.
DOI: 10.6085/aa/khlx00_xxxitv2xlsr01_20190928.50.1
title: PISCO: Intertidal: site temperature data: Kibesillah Hill, California, USA (KHLX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Kibesillah Hill, California, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2019-09-28. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10.0 minute intervals.
DOI: 10.6084/m9.figshare.14599904.v1
title: Earthquake Risk Embedded in Property Prices: Evidence from Five Japanese Cities*

description: We analyze the impact of short-run (90 days) and long-run (30 years) earthquake risk on real estate transaction prices in five Japanese cities (Tokyo, Osaka, Nagoya, Fukuoka, and Sapporo), using quarterly data over the period 2006–2015. We exploit a rich panel data set (331,343 observations) with property characteristics, ward attractiveness information, macroeconomic variables, and long-run seismic hazard data, supplemented with short-run earthquake probabilities generated from a seismic excitation model using historical earthquake occurrences. We design a hedonic property price model that allows for subjective probability weighting, employ a multivariate error components structure, and develop associated maximum likelihood estimation and variance computation procedures. Our approach enables us to identify the total compensation for earthquake risk embedded in property prices, to decompose this into pieces stemming from short-run and long-run risk, and to distinguish between objective and subjectively weighted (‘distorted’) earthquake probabilities. We find that objective long-run earthquake probabilities have a statistically significant negative impact on property prices, whereas short-run earthquake probabilities become statistically significant only when we allow them to be distorted. The total compensation for earthquake risk amounts to an average –2.0% of log property prices, slightly more than the annual income of a middle-income Japanese household.
DOI: 10.6073/pasta/1ac234d6756aeb627349f7d04f675bb3
title: Long-term fish size data for Wisconsin Lakes Department of Natural Resources and North Temperate Lakes LTER 1944 - 2012 (Reformatted to the ecocomDP Design Pattern)

description: This data package is formatted as an ecocomDP (Ecological Community Data Pattern). For more information on ecocomDP see https://github.com/EDIorg/ecocomDP. This Level 1 data package was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-ntl/357/2. The abstract below was extracted from the Level 0 data package and is included for context: This dataset describes long-term (1944-2012) variations in individual fish total lengths from Wisconsin lakes. The dataset includes information on 1.9 million individual fish, representing 19 species. Data were collected by Wisconsin Department of Natural Resource fisheries biologists as part of routine lake fisheries assessments. Individual survey methodologies varied over space and time and are described in more detail by Rypel, A. et al., 2016. Seventy-Year Retrospective on Size-Structure Changes in the Recreational Fisheries of Wisconsin. Fisheries, 41, pp.230-243. Available at: http://afs.tandfonline.com/doi/abs/10.1080/03632415.2016.1160894
DOI: 10.34810/data72/1220
title: 01AC_1.MR.0004.0240.2013.03.10.14.06.27.296875.165387667.IMA
DOI: 10.5281/zenodo.5129246
title: Data to accompany "Stable isotope ratios in seawater nitrate reflect the influence of Pacific water along the northwest Atlantic margin".

description: This dataset accompanies the article by Owen A. Sherwood, Samuel H. Davin, Nadine Lehmann, Carolyn Buchwald, Evan N. Edinger, Moritz F. Lehmann, and Markus Kienast: "Stable isotope ratios in seawater nitrate reflect the influence of Pacific water along the northwest Atlantic margin", Biogeosciences, 18, 1–20, 2021. https://doi.org/10.5194/bg-2021-45. The dataset comprises nutrient concentrations and nitrate isotope ratios for “bottle” samples of seawater collected by CTD/Rosette from 25 stations along the northwest Atlantic Ocean, from the Labrador shelf to northern Baffin Bay. Seawater physical properties measured by CTD are also provided for the depths at which bottle samples were collected. The complete sampling and analytical methods are provided in the accompanying article.
DOI: 10.5281/zenodo.5129245
title: Data to accompany "Stable isotope ratios in seawater nitrate reflect the influence of Pacific water along the northwest Atlantic margin".

description: This dataset accompanies the article by Owen A. Sherwood, Samuel H. Davin, Nadine Lehmann, Carolyn Buchwald, Evan N. Edinger, Moritz F. Lehmann, and Markus Kienast: "Stable isotope ratios in seawater nitrate reflect the influence of Pacific water along the northwest Atlantic margin", Biogeosciences, 18, 1–20, 2021. https://doi.org/10.5194/bg-2021-45. The dataset comprises nutrient concentrations and nitrate isotope ratios for “bottle” samples of seawater collected by CTD/Rosette from 25 stations along the northwest Atlantic Ocean, from the Labrador shelf to northern Baffin Bay. Seawater physical properties measured by CTD are also provided for the depths at which bottle samples were collected. The complete sampling and analytical methods are provided in the accompanying article.
DOI: 10.34810/data72/1221
title: 01AC_1.MR.0004.0231.2013.03.10.14.06.27.296875.165387505.IMA
DOI: 10.34740/kaggle/dsv/2456012
title: EU recovery and resilience facility current status
DOI: 10.34810/data72/1222
title: 01AC_1.MR.0004.0198.2013.03.10.14.06.27.296875.165386911.IMA
DOI: 10.6084/m9.figshare.669703
title: Density experiment in Negev Desert Israel

description: 1 Few experiments directly test the role of density dependence in natural plant communities.<br>2 We tested (i) whether different initial seed densities of the entire seed bank of an annual plant community affected performance (emergence, mean plant biomass and survival) and (ii) whether density-dependent processes were operating within the communities. We also tested whether life-stage, year and soil moisture (both on a topographic gradient and in an experimental manipulation) influenced the effects of seed density. 3 We considered two distinct phases: seed to emergent seedlings, and emergent seed- lings to established plants.<br>4 The seed bank was collected from a semistabilized sand dune in the Negev Desert, Israel. This was added to sieved sand in plots at the same site at four different initial seed densities: 1/16×, 1/4×, 1× (natural seed density) and 2×. The experiment was repeated for three consecutive growing seasons. 5 Emergence of seedlings was significantly influenced by initial seed density in all 3 years, with higher initial seed densities having lower rates of emergence.<br>6 Mean final plant size was negatively density dependent and consistently unaffected by the initial seed density sown. 7 In general, there were no strong interactions of topographic position with initial seed density, processes within the vegetation were not density dependent and the experi- mental addition of water did not influence any of the performance measures tested. Density-dependent processes vary from year to year, while moisture effects do not. 8 We conclude that seedling emergence and some processes in the established plant community are density dependent, but the established plant community is also affected by other processes, such as resource limitation.
DOI: 10.34810/data72/1223
title: 01AC_1.MR.0004.0131.2013.03.10.14.06.27.296875.165385705.IMA
DOI: 10.6084/m9.figshare.13497219.v4
title: Sampling techniques for rumen microbial analysis

description: The purpose of this study was to compare the microbial composition of samples retrieved by different techniques at different timepoints post-feeding and rumen fractions (whole, liquid, and solid) to identify an appropriate non-invasive sampling method to serve as a proxy for cannula-derived rumen samples for microbial analysis. <br>