cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25493/x0xe-7x0
title: Electrophysiological single electrode figure-ground modulation data from monkey superior colliculus

description: This dataset contains electrophysiological single cell activity recorded from cells from the different layers of the Superior Colliculus (SC) . One of the most important tasks of the visual system is to segregate objects from their backgrounds to guide behavior, a process called figure-ground segregation (FGS). Neural correlates of FGS have been found in visual areas as early as the primary visual cortex (V1) (i.e., Lamme, 1995). V1 neurons of macaque monkeys showed enhanced responses to figures (objects) compared to backgrounds, an effect known as figure-ground modulation (FGM). Furthermore, it has been shown that there was a relationship in V1 between FGM and eye movements that were made towards segregated figures, i.e. that activity in V1 correlated with behavior (Poort et al., 2012). What was yet unknown is how and where the FGM signal observed in visual areas was transformed into a motor response in order to make eye movements towards these segregated objects. Therefore, in this study we investigated the role of the subcortical superior colliculus (SC) in this sensory-motor transformation during FGS. SC is a multi-layer structure and consists of layers in which cells are responsive to visual stimuli and layers in which cells are responsive to movements, making it the ideal candidate to study this sensory-motor transformation. We trained two macaque monkeys on a textured figure-ground segregation task and subsequently we measured their SC activity from cells in the different layers in response to figures and backgrounds, and furthermore we measured the SC response when the monkeys made eye movements towards the figures.
DOI: 10.5525/gla.researchdata.953
title: Stability definitions for the Hospitals / Residents problem with Couples and Ties: Mathematical models and computational studies
DOI: 10.7910/dvn/o6o04o/4ztl6i
title: -SED -2-5h inc_5) PD1-T+JY PDL1_2_005.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/b8moib
title: Ir v HRP_8-FMO-APC HRP_008.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/ezksbl
title: PD1_Ir_FMO-PE_012.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/k014xj
title: Unstained_JY PDL1_017.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/mgrsdh
title: JY PDL1-T+Jurkat_Ir time course_PDL1-T 30sec_003.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/oabggq
title: Compensation Controls_APC Stained Control_014.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/r9pilw
title: Compensation Controls_Unstained Control_007.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/s7fq0r
title: Ir v HRP_Unst Jurkat PD1_009.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/wf1udr
title: Compensation Controls_APC Stained Control_014.fcs

description: :unav
DOI: 10.17632/d9f2gx56nm.1
title: Data for: Development and characterization of BODIPY-derived tracers for fluorescent labeling of the endoplasmic reticulum

description: Supplementary data
DOI: 10.7910/dvn/o6o04o/dgc2f2
title: Compensation Controls_PE Stained Control_013.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/edai50
title: JY PDL1-T+Jurkat_Ir time course_PDL1-T No light_001.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/gycxyj
title: PDL1-T HRP 30sec_Unst JY PDL1_005.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/jml2xg
title: -SED -2-5h inc_1) Iso-T+JY PDL1_1_001.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/nqsgen
title: Ir time course_4-JY PDL1 PDL1-T Ir 2min_004.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/nzzgip
title: Ir time course_3-JY PDL1-T Ir 30sec_003.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/wu0foa
title: 30sec_JY PDL1 PDL1-T+Jurkat 1_004.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/ymz3wc
title: -SED -2-5h inc_Unstained JY PDL1_014.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/88mluy
title: PD1_Ir_PD1 2min 3_006.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/cizwva
title: JY PDL1-T Ir 10min_JY PDL1 PDL1-T Ir No light_021.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/ejb5s9
title: Compensation Controls_PE Stained Control_019.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/euma4u
title: - -_Iso_3_003.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/iiccaz
title: Unst_JY PDL1_008.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/kwbi2a
title: Ir time course_3-JY PDL1 PDL1-T Ir 30sec_003.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/oka8yn
title: Specimen_001_Unst Jurkat PD1_009.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/tjgewj
title: -SED -2-5h inc_12) PD1-T+Jurkat WT_3_012.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/vhh46x
title: PD1_Ir_FMO-APC_011.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/25obnj
title: Ir time course_Unst Jurkat_009.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/ipwnsu
title: 30sec_JY PDL1-T FMO-AF488 CD3_007.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/jbttwy
title: PDL1-T HRP 30sec_1-Iso-T_001.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/ktlxef
title: -SED -2-5h inc_FMO-CD3_016.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/m0ugmn
title: - -_Iso_1_001.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/orjrxr
title: Specimen_001_3-Jurkat Iso-T+JY PDL1 HRP 30sec_003.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/pwmpie
title: Compensation Controls_Alexa Fluor 488 Stained Control_009.fcs

description: :unav
DOI: 10.7910/dvn/o6o04o/qhfbf5
title: 30sec_JY PDL1 PDL1-T+Jurkat 3_006.fcs

description: :unav
DOI: 10.17632/2pkhbdgjys.1
title: Validation of Critical Ages in MRI Aging Data

description: Various forms of nonlinear maturation likely reflect different biological mechanisms such that theoretical distinctions between maturation patterns ought to be considered. Code is provided to simulate data with known maturation patterns to establish the level of reliability and validity of a nonparametric fitting method, the smoothing spline. Three categories of maturation patterns are explored: U-shaped, with a change in direction across the life span; sigmoidal, with a period of change preceded and followed by no change in volume; accelerating, with changes in amplitude but not direction. As noise is a limiting factor in curve fitting, smoothing splines were fit to data with idealized low noise levels and higher, more realistic noise levels. Using the included analysis code, the smoothing spline can be shown to contain the relevant information to extract the critical ages of all maturation patterns in the form of derivative zero points, but each derivative zero point is only information for certain maturation patterns. Therefore, an additional classification step was included to first determine the category of maturation pattern. The code can be adapted to analyze actual biological data if it is put into the proper format. Run the demo code to see how the code works.
DOI: 10.17632/4f6vjxbfwv.1
title: GP-Net: A toolbox to solve the water flow problem

description: This open source code solves the network water flow problem for any water distribution network. Examples are included
DOI: 10.17632/72463rvd77.1
title: TELENEO: Teledermatology of actinic keratosis and field cancerization

description: Dataset of 636 patient swith 1000 keratotic lesions and diagnosis of three teledermatologists in three stages. Stage 1: First evaluation of the 3 teledermatologists Stage 2: Second evaluation of the 3 teledermatologists Stage 3: Face-to-face diagnosis of the 3 teledermatologists (separately and final consensus or diagnosis by biopsy).
DOI: 10.17632/nxfg536kg3.1
title: Effect of inclusions on hydrogen diffusion and trapping in X70 pipeline steel

description: The inclusions in the mid-layer from the centre segregation zone of pipeline steels had an important in hydrogen diffusion and accumulation in pipeline steel. This detailed study is made after obtaining ambiguous results from the literature.
DOI: 10.17632/z4gxnhchky.2
title: Supporting documentation for time-dependent concrete material models in OpenSees

description: This dataset contains supporting documentation explaining the use of time-dependent concrete material models TDConcrete, TDConcreteEXP, TDConcreteMC, and TDConcreteMC10NL in OpenSees. The dataset contains a manual explaining the use and features of the models, an Excel table for calculating model input parameters and example files using the material model TDConcreteMC10NL on a specific example.
DOI: 10.17632/cp2hdhkys3.1
title: Data of: Integration of handheld NIR and machine learning for the development of a “Measure & Monitor” technology for chicken meat authenticity

description: Near Infrared (NIR) spectroscopy data of chicken meat (fillets) from multiple growth conditions and origin countries (Netherlands and Ireland)
DOI: 10.17632/cp2hdhkys3.2
title: Data of: Integration of handheld NIR and machine learning for the development of a “Measure & Monitor” technology for chicken meat authenticity

description: Near Infrared spectroscopy data of chicken meat (fillets) from multiple growth conditions and countries of origin (Netherlands and Ireland).
DOI: 10.17632/wwgw5vsfg3.3
title: Data set of users’ perceptions about the services provided by a Library

description: The following question is alive: how to evaluate the users’ satisfaction regarding the services provided by a library? Duarte and Costa [1] proposed and applied a framework evaluating the satisfaction of the users of a library, regarding the library services. That proposal was organized into three steps: a systematized literature review that has supported the construction of a questionnaire; a data collection though applying the questionnaire to a sample; and, the analysis of the data collected. The results from the literature review were the input for defining the questionnaire for evaluating the users’ satisfaction. Here we describe ta full dataset containing the perceptions of users about the services provided by a library specialized in the field of nuclear technology, sited in Rio de Janeiro Brazil. The sample was composed of 117 respondents of whom 94 returned forms. This data was also used in Costa and Duarte [2] to support the validation of use of ELECTRE ME as a method to evaluate quality of services in a multicriteria and multiple evaluator environment.
DOI: 10.17632/xb3f5jrbwv.1
title: Pectin homogalacturonan nanofilament expansion drives morphogenesis in plant epidermal cells

description: This database is associated with the following publication: Pectin homogalacturonan nanofilament expansion drives morphogenesis in plant epidermal cells. It includes dSTORM single-molecule localization data, digital microscope time-lapse imaging data, cryo-fracture SEM imaging data, and confocal microscopy imaging data. STORMdata Haas et al 2020 Molecular Lists.7z These data were acquired using the Nikon N STORM microscope. The single-molecule detection was performed using Nikon NIS elements software. This dataset contains the dSTORM microscopy data presented in Fig. 1 and 2, figs. S3, S5, S8, and S9 and movies 1 to 6. It can be analyzed with Matlab based program associated with this publication, Grafeo_v2, and freely available for download at GitHub or Zenodo: DOI: 10.5281/zenodo.3581144 or https://zenodo.org/badge/latestdoi/114145546. Each folder corresponds to independent experimental preparation and it contains subfolders with names corresponding to the condition, antibody, and fluorophore tag used, e.g., WT - wild type, PME, and PMEI mutant plants; 2F4 and LM20 are the primary antibodies used to tag low and highly methylesterified homogalacturonan, respectively. Each STORM data set has two channels corresponding to CF568 and Alexa 647 dye. E.g. the folder: 2015_05_20_00631 contains a subfolder: WT_2F4-568_LM20-647, corresponding to WT plant condition where demethylated pectins were detected with 2F4 antibody revealed with secondary antibody conjugated to CF568 fluorophore, etc. The files A647-3d_1.txt, and CF568-3d_1.txt contain the list of the localized single molecules and their attributes (described in the column headers) for two imaging channels, Alexa 647 and CF568 separately. Low-resolution images for both channels are also provided, as well as overall cell wall labeling with CalcoFluor fluorophore (405 nm). CryoSEMData.7z This dataset contains Cryo-fracture SEM images presented in Figs. 1, 3 and 4, and fig. S6. These data can be analyzed using Matlab based scripts (SEMfilaments) associated with this publication and available for the download at GitHub or Zenodo : DOI: 10.5281/zenodo.3581097 or: https://zenodo.org/badge/latestdoi/221728265 DigitalMicroscopeTimelapseData.7z The data were using Keyence VHX-5000 (KEYENCE (UK) LIMITED Milton Keynes, U.K.) digital microscope and are presented in Fig. 3 and fig. S1 and S10. These data can be analyzed using the Matlab based scripts (ShapeSpectraAnalysis) associated with this publication and available for the download at GitHub or Zenodo : DOI: 10.5281/zenodo.3581129 or: https://zenodo.org/badge/latestdoi/197577846 TissueExpansion.7z The data were acquired using Zeiss LSM 710 laser scanning confocal microscope (Zeiss Oberkochen Germany). This dataset includes representative confocal microscopy images presented in Fig. 4 and fig. S10 and the .xls file with analyzed data. If you need any further details, please do not hesitate to contact Kalina Haas: inakuflers@wp.pl
DOI: 10.17632/5sfsxjg9wj.1
title: Data for: Multi-source time reversal focusing for airborne sound

description: The attachment contains thousands pictures demonstrating the results of the multi-source time reversal focusing methods in frequency domain. Meanwhile,it provides direct references for the analysis in Chapter 4.2 in the paper. More details could be obtained in the attachment files.
DOI: 10.6084/m9.figshare.11719470.v3
title: Simulated significant wave height (3-hourly, 150a) from FIO-ESM v2.0 abrupt-4xCO2 experiment r1i1p1f1

description: Simulated significant wave height (3-hourly, 150a) from FIO-ESM v2.0 abrupt-4xCO2 experiment (CO2 abruptly quadrupled and then held constant) r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.25345/c5339w
title: MassIVE MSV000084837 - Phase separation by the membrane protein LEM2 governs ESCRT-mediated nuclear envelope reformation
title: Quantitative crosslinking analysis to probe in vitro conformational dynamics governing ESCRT-mediated nuclear envelope formation. CHMP7 was crosslinked with D12-BS3 while CHMP7 in the presence of LEM2 winged helix domain was crosslinked with H12-BS3. Samples were mixed after crosslinking and analyzed according to standard procedures. The raw files included here correspond to four SEC fractions from a single experiment that contain crosslinked peptides.
DOI: 10.17632/388cpp5h5h.2
title: Supplementary Tables for "The proteomic skin profile of moderate-to-severe atopic dermatitis shows an inflammatory and cardiovascular signature"

description: This data extends the “inflammation map” of atopic dermatitis, which has been created largely through gene expression profiling. It suggests that risk proteins found in blood are primarily derived from skin. Early treatment of skin inflammation may lower systemic immune or cardiovascular-risk mediators in blood, potentially modulating disease co-morbidities.
DOI: 10.6084/m9.figshare.11664015.v12
title: Simulated significant wave height (3-hourly, 150a) from FIO-ESM v2.0 1pctCO2 experiment r1i1p1f1

description: Simulated significant wave height (3-hourly, 150a) from FIO-ESM v2.0 1pctCO2 experiment (CO2 prescribed to increase at 1% per year) r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.7910/dvn/8xt86f/0p4aol
title: 01_01_main_estimates_point_estimates.R

description: replication script for i) point estimates and standard errors in table 1 column 1, and table 2 column 1 and 2, ii) point estimates in table 2, column 3, and iii) table A1.
DOI: 10.7910/dvn/8xt86f/7qc6ds
title: 01_02_heterogeneity_point_estimates.R

description: replication script for point estimates in table 3.
DOI: 10.7910/dvn/8xt86f/a3jhr8
title: 01_04_heterogeneity_appendix_point_estimates.R

description: replication script for point estimates in table A5.
DOI: 10.7910/dvn/8xt86f/snmhzh
title: 01_05_different_stages_point_estimates.R

description: replication script for point estimates in table A7.
DOI: 10.7910/dvn/8xt86f/yvd6bk
title: 01_03_robustness_checks_point_estimates.R

description: replication script for point estimates in table A2.
DOI: 10.17632/95mr7pr8rj.2
title: Two Daily Weather Datasets: Chiang Mai International Airport and Theodore Francis Green State Airport

description: Two daily weather datasets for experimenting data-driven models on two different weather types: 1. Chiang Mai International Airport, Chiang Mai, Thailand from January 1st 1998 to July 31st 2019. The data were acquired from the station via personal communication. The following files are provided: - chiang_mai_1998-2019_raw.csv : the raw data without any preprocessing. Note that some of the data are missing. - chiang_mai_1998-2019.csv : the preprocessed data: the dates and redundant variables were removed, the missing data were imputed with MICE algorithm and all units were changed to SI units. 2. Theodore Francis Green State Airport, Providence, RI from January 1st 2006 to October 31st 2019. The data were acquired from the National Oceanic and Atmospheric Administration (https://www.ncdc.noaa.gov/cdo-web/datatools/lcd). The following files are provided: - providence_2006-2019_raw.csv : the raw data with redundant variables removed. Some of the data are missing. -providence_2006-2019.csv : the preprocessed data: the dates were removed, the missing data were imputed with MICE algorithm and all units were changed to SI units.
DOI: 10.7910/dvn/8xt86f/42ujen
title: network_strong_weak_ties.rda

description: a network object used for an extension of the main model. A detailed description is contained in the file codebook.pdf.
DOI: 10.7910/dvn/8xt86f/afbuqc
title: 03_01_ergm.R

description: replication script for figure 2 and table A8.
DOI: 10.7910/dvn/8xt86f/dpj5ys
title: 05_ranking.R

description: replication script for table A4.
DOI: 10.7910/dvn/8xt86f/f4oran
title: 02_02_horse_race_point_estimates.R

description: replication script for i) point estimates and standard errors in table A3 columns from 1 to 8, and ii) point estimates in table A3, column 9.
DOI: 10.7910/dvn/8xt86f/g3mk3m
title: network.rda

description: a network object used for an extension of the main model. A detailed description is contained in the file codebook.pdf.
DOI: 10.7910/dvn/8xt86f/lbujg4
title: 06_figure1.R

description: replication script for figure 1.
DOI: 10.7910/dvn/8xt86f/xs2qbx
title: 02_01_main_estimates_school_fixed_effects_point_estimates.R

description: replication script for i) point estimates and standard errors in table 1 column 2, and ii) point estimates in table 2, column 4.
DOI: 10.5281/zenodo.3627187
title: weecology/portalPredictions 2020-01-24

description: Using various models to forecast abundances at Portal
DOI: 10.7910/dvn/8xt86f/283fio
title: 04_01_2_main_estimates_tab_2_col_4_boot_st_err.R

description: replication script for bootstrapped standard errors in table 2, column 4.
DOI: 10.7910/dvn/8xt86f/8h7vyz
title: layout_figure_1.tab

description: layout coordinates to replicate figure 1. A detailed description is contained in the file codebook.pdf.
DOI: 10.7910/dvn/8xt86f/bobqo8
title: 04_01_1_main_estimates_tab_2_col_3_boot_st_err.R

description: replication script for bootstrapped standard errors in table 2, column 3.
DOI: 10.7910/dvn/8xt86f/hjnj0a
title: replication_data_first_step_school_fe.rda

description: additional dataset used for an extension of the main model. A detailed description is contained in the file codebook.pdf.
DOI: 10.7910/dvn/8xt86f/ikj8pa
title: plot_my_gof.R

description: a function used to produce figure A1.
DOI: 10.7910/dvn/8xt86f/mutn4c
title: replication_data.RData

description: main dataset. A detailed description is contained in the file codebook.pdf.
DOI: 10.7910/dvn/8xt86f/qjpezs
title: replication_data_first_step_united.rda

description: additional dataset used for an extension of the main model. A detailed description is contained in the file codebook.pdf.
DOI: 10.7910/dvn/8xt86f/ttwsmd
title: 02_03_party_effects_ties_effects_timing_point_estimates.R

description: replication script for point estimates in table A6.
DOI: 10.17632/95mr7pr8rj.1
title: Two Daily Weather Datasets: Chiang Mai International Airport and Theodore Francis Green State Airport

description: Two daily weather datasets for experimenting data-driven models on two different weather types: 1. Chiang Mai International Airport, Chiang Mai, Thailand from January 1st 1998 to July 31st 2019. The data were acquired from the station via personal communication. The following files are provided: - chiang_mai_1998-2019_raw.csv : the raw data without any preprocessing. Note that some of the data are missing. - chiang_mai_1998-2019.csv : the preprocessed data: the dates and redundant variables were removed, the missing data were imputed with MICE algorithm and all units were changed to SI units. 2. Theodore Francis Green State Airport from January 1st 1998 to July 31st 2019. The data were acquired from the National Oceanic and Atmospheric Administration (https://www.ncdc.noaa.gov/cdo-web/datatools/lcd). The following files are provided: - providence_2006-2019_raw.csv : the raw data with redundant variables removed. Some of the data are missing. -providence_2006-2019.csv : the preprocessed data: the dates were removed, the missing data were imputed with MICE algorithm and all units were changed to SI units.
DOI: 10.25387/g3.11339765
title: Supplemental Material for Best and Leptin, 2020

description: <b>Table S1</b>: Raw counts per larva of phenotypes related to dorsal branch<b>Table S2</b>: Raw counts per terminal cell of phenotypes related to terminal branches<b>Table S3</b>: Sequences of genotyping primers used to confirm N-terminal insertion of YFP in each Rab locus by PCR<br><br>Phenotypes were counted manually in heat-fixed third-instar wandering larvae homozygous for an endogenously YFP-tagged Rab and additionally expressing the transgenic elements in the "Background" column. Usually the mothers used for the cross were also homozygous for the YFP-tagged allele, but for some Rabs this was not possible (indicated in the "Maternal genotype" column).<br>
DOI: 10.25387/g3.11339765.v1
title: Supplemental Material for Best and Leptin, 2020

description: <b>Table S1</b>: Raw counts per larva of phenotypes related to dorsal branch<b>Table S2</b>: Raw counts per terminal cell of phenotypes related to terminal branches<b>Table S3</b>: Sequences of genotyping primers used to confirm N-terminal insertion of YFP in each Rab locus by PCR<br><br>Phenotypes were counted manually in heat-fixed third-instar wandering larvae homozygous for an endogenously YFP-tagged Rab and additionally expressing the transgenic elements in the "Background" column. Usually the mothers used for the cross were also homozygous for the YFP-tagged allele, but for some Rabs this was not possible (indicated in the "Maternal genotype" column).<br>
DOI: 10.7910/dvn/8xt86f/20janc
title: 04_03_1_robustness_checks_tab_A2_col_1_boot_st_err.R

description: replication script for bootstrapped standard errors in table A2, column 1.
DOI: 10.7910/dvn/8xt86f/4lvyyq
title: 04_03_4_robustness_checks_tab_A2_col_4_boot_st_err.R

description: replication script for bootstrapped standard errors in table A2, column 4.
DOI: 10.7910/dvn/8xt86f/fzjiwn
title: 04_03_2_robustness_checks_tab_A2_col_2_boot_st_err.R

description: replication script for bootstrapped standard errors in table A2, column 2.
DOI: 10.7910/dvn/8xt86f/lc2dpp
title: 04_02_6_heterogeneity_tab_3_col_6_boot_st_err.R

description: replication script for bootstrapped standard errors in table 3, column 6.