cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25794309
title: Supplementary Material for: Epidemiology and outcomes of neonatal sepsis – experience from a tertiary Australian NICU

description: Introduction: Neonatal sepsis is associated with significant mortality and morbidity. Low-middle-income countries are disproportionately affected, but late-onset sepsis (LOS) still occurs in up to 20% of infants &lt;28 weeks in high-income countries. Understanding site-specific data is vital to guide management.
Methods: A retrospective cohort study was conducted at King Edward Memorial Hospital (KEMH), Perth. Infants admitted between January 2012 and June 2022 were included. Data were extracted from routine electronic databases. Incidence and aetiology of sepsis were determined and the association of sepsis with neonatal outcomes analysed. 
Results: During the study period, 23,395 newborns were admitted with a median gestation of 37 weeks and birth weight 2800g. There were 370 sepsis episodes in 350 infants; 102 were early-onset sepsis (EOS) (1.6 per 1000 live births), predominantly S. agalactiae (35, 34.3%) and E. coli (27, 26.5%); 268 were LOS (0.9 per 1000 inpatient days), predominantly Coagulase-negative staphylococci (CONS) (156, 57.6%) and E. coli (30, 11.1%). The incidence of LOS declined from 2012 to 2022 (p=0.002). 
Infants with EOS had increased brain injury (25.7% vs 4.1%; p=0.002) and mortality (18.8% vs 1.6%; p&lt;0.001). Those with LOS had increased hospital stay (median 95 vs 15 days; p&lt;0.001), mortality (15.3% vs 1.6%; p=0.018), necrotising enterocolitis (NEC) (7.4% vs 0.5%; p&lt;0.001) and chronic lung disease (CLD) (58.1% vs 5.9%; p=0.005). Infants &lt;28 weeks with sepsis were at increased risk of neurodevelopmental impairment compared to those without infection (43.2% vs 30.9%, p=0.027).
Conclusions: While we observed a reduction in LOS incidence, sepsis remains associated with higher mortality, and in survivors with longer hospital stay and increased risk of brain injury, NEC, CLD and neurodevelopmental impairment.
DOI: 10.6084/m9.figshare.27965742
title: Supplementary Material for: Time to Loss of Disease Control Following Guselkumab Withdrawal in Relation to Initial Speed of Response: A Post-Hoc Analysis of the VOYAGE 2 Trial

description: Background: 
Psoriasis is a chronic inflammatory skin disorder typically requiring lifelong treatment. As such, patients may occasionally need treatment breaks. Understanding factors predicting maintenance of disease control during treatment breaks could improve long-term disease management. This post-hoc analysis of data from the Phase 3 VOYAGE 2 clinical trial evaluates how initial speed of response to guselkumab treatment affects time to loss of disease control following treatment withdrawal and identifies baseline characteristics corresponding with maintenance of disease control.

Methods: 
Patients with moderate-to-severe plaque psoriasis assigned to treatment withdrawal following achievement of a Psoriasis Area and Severity Index (PASI)90 response after two or four guselkumab doses. Loss of disease control was defined as time to PASI ≥3 and was assessed using Kaplan–Meier analysis. The relationship between baseline characteristics and maintenance of response was evaluated using a Cox proportional hazards model.

Results: 
Of patients who were randomized to placebo and switched to guselkumab at Week 16, 149/248 (60%) achieved PASI90 after two guselkumab doses (Week 28). Of patients who were randomized to guselkumab, 377/496 (76%) achieved PASI90 after four guselkumab doses (Week 28), of whom 182 were then re-randomized to withdrawal. Of these, 131 had achieved PASI90 after two guselkumab doses (Week 12) and 51 had achieved PASI90 after four guselkumab doses (Week 28). Maintenance of disease control following guselkumab withdrawal was longer in patients who achieved PASI90 after two versus four guselkumab doses. Lower body mass index, biologic naïve status, and shorter disease duration at baseline corresponded with a longer time to PASI ≥3 following withdrawal.

Conclusion: 
Faster initial response to guselkumab resulted in longer maintenance of disease control after treatment withdrawal. These findings may be used to inform personalized dosing strategies with guselkumab, which may increase patient compliance to treatment and improve long-term treatment outcomes.
DOI: 10.6084/m9.figshare.27966165
title: Supplementary Material for: Effects of roxadustat on thyroid profiles in patients and animals with chronic kidney disease

description: Background
Roxadustat, a hypoxia-inducible factor prolyl hydroxylase inhibitor used in renal anemia treatment, has been associated with thyroid hormone suppression. This study investigated the patterns of thyroid profile changes following roxadustat administration and their clinical implications.
Methods
In this retrospective study (2019-2023) at Shenzhen Second People's Hospital, patients were categorized based on TSH reduction during follow-up (≥50% decrease vs&lt;50% decrease). Thyroid profiles, clinical symptoms, and laboratory indicators were analyzed. Quality of life was assessed using EQ-5D-3L and ThyPRO questionnaires. Complementary animal experiments were conducted to verify the effects of roxadustat on thyroid function.
Results
A total of 118 patients were finally enrolled in our study. Among patients with initially normal thyroid function, 31 developed euthyroid sick syndrome post-roxadustat treatment. Treatment significantly decreased T3, FT3, FT4, and TSH levels, with TSH showing marked reduction within the first 10 weeks. Contrastingly, animal models exhibited decreased T3 but increased TSH levels, regardless of renal status. Blood lipid levels decreased in all patients, particularly in those with substantial TSH reduction. Despite thyroid alterations, quality of life scores remained unchanged between roxadustat-treated and untreated patients, with no overt clinical symptoms in either humans or animals. 
Conclusions
While roxadustat induces significant thyroid hormone suppression in patients, these alterations rarely manifest as clinical symptoms. Euthyroid sick syndrome is the predominant thyroid dysfunction pattern observed. Regular thyroid function monitoring is recommended during roxadustat therapy, particularly during the initial treatment phase when TSH changes are most pronounced.
DOI: 10.6084/m9.figshare.27966483
title: Supplementary Material for: Incidence and clinical outcomes of critically ill patients with augmented renal clearance: A retrospective cohort

description: Introduction: Although glomerular hyperfiltration in augmented renal clearance (ARC) results in suboptimal exposure to medications, its association with clinical outcomes is less clear. This study aimed to evaluate the incidence and clinical outcomes of ARC in an intensive care unit (ICU) population.
Methods: This retrospective cohort included all ICU patients admitted between July 1, 2018, and June 30, 2019. The primary outcome was the incidence of ARC, defined as a creatinine clearance  of 130 mL/min/1.73 m2, for at least one day. Secondary outcomes included mechanical ventilation (MV) duration, ICU length of stay (LOS), in-hospital and 30-day mortality, acute kidney injury (AKI), and development of a multidrug-resistant (MDR) pathogen.
Results: A total of 561 patients were included. The study population was 55% male (n=308), with a median age of 64 [IQR 53-74] years, a median baseline serum creatinine of 0.9 mg/dL [IQR 0.7-1.0], and primarily medical ICU population (n=396, 71%). The incidence of ARC was 25% (n=139). While there was no difference in MV duration, the ARC group had a longer ICU LOS (median [IQR] 6 [4-9] vs. 5 [4-8] days, p&lt;0.001), and more MDR pathogens (22% vs. 9%, p&lt;0.001). In-hospital mortality (6% vs. 12%, p=0.041), 30-day mortality (10% vs. 21%, p=0.005), and AKI (13% vs. 21%, p=0.027) were lower in patients with ARC. 
Conclusion: The incidence of ARC in this general ICU population was 25%. Differences in the clinical outcomes of patients with ARC should be further investigated.
DOI: 10.1285/i20705948v13n1p229
title: On The Weighted BurrXII Distribution: Theory and Practice

description: We take an in-depth look at the weighted Burr-XII distribution. This distribu-tion generalizes Burr-XII, Lomax, and log-logistic distributions. We discuss the dis-tributional characteristics of the probability density function, the failure rate function,and mean residual lifetime of this distribution. Moreover, we obtain various statisti-cal properties of this distribution such as moment generating function, entropies, meandeviations, order statistics and stochastic ordering. The estimation of the distributionparameters via maximum likelihood method and the observed Fisher information ma-trix are discussed. We further employ a simulation study to investigate the behavior ofthe maximum likelihood estimates (MLEs). A test concerning the existence of size-biasin the sample is provided. In the end, a real data is presented and is analyzed usingthis distribution along with some existing distributions for illustrative purposes.
DOI: 10.1285/i24212113v6i2-1p56
title: Perceived procedural justice, group identification, and support for economic equality: a test of the Group Engagement Model

description: This research explores the relationship between perceived procedural justice, group identification and support for economic equality at the national (Italian) and supranational (European and global) levels. The aim is to test the assumptions of the Group Engagement Model (GEM), stating that procedural justice encourages group identification, which in turn increases pro-group behaviour towards reaching shared goals. In addition, we also aim to challenge GEM with research on system-justification that shows how perceived justice is intertwined with the higher need to secure boundaries of group membership limiting expectations of extended social solidarity. The data represents a sample (N = 222) of Italian adults obtained via social medias using a self-report questionnaire. Perceived procedural justice accounted for higher group identification and support for inequality at all three levels, suggesting the occurrence of system-justifying dynamics. Namely, subjects who perceived higher levels of procedural justice in the Italian national, European and global contexts supported less economic equality for members of these three communities respectively. However, this relationship was not mediated by their group identification. The results are discussed from a global perspective towards the reduction of economic inequality.
DOI: 10.15468/hc7epr
title: An updated checklist of fishes of Dongsha Island, Taiwan, northern South China Sea

description: Dongsha Atoll, situated in the northern part of the South China Sea, is surrounded by coral reefs and deep-sea habitats. The coastal areas of the atoll, a marine protected area, serve as important nursery habitats for many reef fish species. At the same time, the offshore deep-sea continental slopes are historically important fishing grounds. Although previous inventories primarily focused on coral reef fishes within the atolls listing 340 species in 99 families, comprehensive surveys of fishes from deeper waters have been incomplete. In this study, we aim to update the species composition of fish fauna around Dongsha Island by analyzing large volumes of frozen bycatch from commercial deep-sea trawlers operating in the area for three years and reviewing the existing literature. We updated the new occurrences of 137 species belonging to 90 families, including potentially undescribed species. This dataset will assist further taxonomic works and significantly enhance the understanding of marine biodiversity in the South China Sea.
DOI: 10.15480/882.9645
title: Dataset of Simulated Cofferdam Models for Parameteric Study

description: This dataset includes the numerical results of a cofferdam box considering a parameter variation. The simulations have all been conducted using the Finite Element Method with the commercial software PLAXIS 2D. The investigated cofferdams represent a cofferdam box used as an excavation enclosure. The Hardening Soil Model with Small-Strain Stiffness is used as the material model. The results show the wall deformations, vertical stress distributions, and earth pressures on the cofferdam walls for different cofferdam dimensions and various parameter combinations.
DOI: 10.1594/pangaea.855412
title: A global seasonal surface ocean climatology of phytoplankton types based on CHEMTAX analysis of HPLC pigments

description: Much advancement has been made in recent years in field data assimilation, remote sensing and ecosystem modeling, yet our global view of phytoplankton biogeography beyond chlorophyll biomass is still a cursory taxonomic picture with vast areas of the open ocean requiring field validations. High performance liquid chromatography (HPLC) pigment data combined with inverse methods offer an advantage over many other phytoplankton quantification measures by way of providing an immediate perspective of the whole phytoplankton community in a sample as a function of chlorophyll biomass. Historically, such chemotaxonomic analysis has been conducted mainly at local spatial and temporal scales in the ocean. Here, we apply a widely tested inverse approach, CHEMTAX, to a global climatology of pigment observations from HPLC. This study marks the first systematic and objective global application of CHEMTAX, yielding a seasonal climatology comprised of ~1500 1°x1° global grid points of the major phytoplankton pigment types in the ocean characterizing cyanobacteria, haptophytes, chlorophytes, cryptophytes, dinoflagellates, and diatoms, with results validated against prior regional studies where possible. Key findings from this new global view of specific phytoplankton abundances from pigments are a) the large global proportion of marine haptophytes (comprising 32 ± 5% of total chlorophyll), whose biogeochemical functional roles are relatively unknown, and b) the contrasting spatial scales of complexity in global community structure that can be explained in part by regional oceanographic conditions. These publicly accessible results will guide future parameterizations of marine ecosystem models exploring the link between phytoplankton community structure and marine biogeochemical cycles.
description: The attached zip file contains two NetCDF files submitted by the authors: One with absolute and one with relative values of phytoplankton-specific abundance in terms of total chlorophyll a (mg/m3).
description: Supplement to: Swan, Chantal; Vogt, Meike; Gruber, Nicolas; Laufkoetter, Charlotte (2015): A global seasonal surface ocean climatology of phytoplankton types based on CHEMTAX analysis of HPLC pigments. Deep Sea Research Part I: Oceanographic Research Papers
DOI: 10.1594/pangaea.971873
title: Diatom boron isotope data from ODP Site 882 over the intensification of Northern Hemisphere Glaciation

description: Diatom boron and boron isotope data from ODP Site 882 in the subarctic Pacific Ocean over the intensification of Northern Hemisphere glaciation (iNHG) at 2.73 Ma.
DOI: 10.1594/wdcc/nsbclim_v1.1
title: North Sea Biogeochemical Climatology (Version 1.1)

description: Project: North Sea Biogeochemical Climatology - Biogeochemical and hydrographic observational data of the Northwest-European Shelf represent one of the most detailed sets of information available for the world shelf seas. This statement was true in 1996 (Laane et al., 1996) but still holds in these days. Since the late 1990ies a large amount of new data were collected in different data centers. In this first stage of this climatology we concentrate on observations of the nutrients nitrate, ammonium, phosphate and silicate as well as of oxygen and chlorophyll. These six parameters describe the condition of the lower trophic marine ecosystem which shows significant spatial and temporal variations due to global changes and direct anthropogenic impact. Observations of temperature and salinity are also considered if recorded simultaneously with the biogeochemical parameters. In a second stage, carbonate system species and suspended matter will be added. The idea of the existing data collection is to soundly represent the chosen parameters in space and time. Outliers in the observations originating, for example, from difficulties of the measurement equipment are caught by an extensive quality control procedure and ignored to the best of knowledge. Real outliers describing only a marginal phenomenon are also ignored by our methods. The sampling density of the observations directly defines the temporal and spatial resolution to which mapping of the parameters seems reasonable. This implies a trade-off between temporal and spatial coverage. At the moment, the climatology made available for the scientific community consists of maps of monthly, climatological monthly and all data mean parameter values for the period 1960-2014. This work was partly funded by the Cluster of Excellenc3 ‘CliSAP’ (EXC177), Universität Hamburg, funded by the German Science Foundation (DFG). Summary: This is Version 1.1 of a biogeochemical climatology in the wider North Sea region. It is an expansion of the NOWESP data base („North Western European Shelf Programme“; Laane et al., 1996) and the KLIWAS North Sea Climatology of Hydrographic Data (Bersch et al., 2013). The data collection comprises observations of the parameters ammonium, chlorophyll-a, nitrate(+nitrite), phosphate, oxygen and silicate for the time period 1960-2014. If accompanying the biogeochemical parameters, temperature and salinity were also included in the collection.
DOI: 10.17632/5y9wdsg2zt.2
title: Concrete Crack Images for Classification

description: The dataset contains concrete images having cracks. The data is collected from various METU Campus Buildings. The dataset is divided into two as negative and positive crack images for image classification. Each class has 20000images with a total of 40000 images with 227 x 227 pixels with RGB channels. The dataset is generated from 458 high-resolution images (4032x3024 pixel) with the method proposed by Zhang et al (2016). High-resolution images have variance in terms of surface finish and illumination conditions. No data augmentation in terms of random rotation or flipping is applied. If you use this dataset please cite: 2018 – Özgenel, Ç.F., Gönenç Sorguç, A. “Performance Comparison of Pretrained Convolutional Neural Networks on Crack Detection in Buildings”, ISARC 2018, Berlin. Lei Zhang , Fan Yang , Yimin Daniel Zhang, and Y. J. Z., Zhang, L., Yang, F., Zhang, Y. D., & Zhu, Y. J. (2016). Road Crack Detection Using Deep Convolutional Neural Network. In 2016 IEEE International Conference on Image Processing (ICIP). http://doi.org/10.1109/ICIP.2016.7533052
DOI: 10.17632/kcc2nwskb9.2
title: Smart Capital City 

description: New Administrative Capital maps and data, Smart cities data
DOI: 10.17632/t295mpnhk4.1
title: Data for "Analysis of Power in Preprocessing Methodologies for Datasets with Missing Values"

description: Results generated by the CPLEX branch-and-bound algorithm. The first column indicates the benchmark instance name, while the second column denotes the MIP emphasis switch. The third and fourth columns respectively give the number of columns and rows in the linear programming problem associated with the instance. The fifth and sixth columns present the dual and the primal values obtained by the CPLEX branch-and-bound, which were employed to compute the optimality gap reported in the seventh column. The eighth column states the final status of the algorithm. Finally, the last column gives the number of nodes evaluated in the branch-and-bound tree.

The status of the algorithm may be "Unknown", "Feasible", or "Optimal".
Unknown refers to the run that did not find a result. Therefore, it indicates missing data.
Feasible refers to instances with a non-optimal solution that ended in 60 seconds.
Optimal are those instances with an optimal value within the 60 seconds time span.

In our original analysis, we rounded the time of all instances with a "Feasible" status to 60 seconds
DOI: 10.17632/x9mv4krnm2.3
title: United States Surface Urban Heat Island database

description: This dataset contains urban and rural LST, DEM, and NDVI data for annual, summer, and winter daytime and nighttime for all census tracts in US urbanized areas, as well as the mean values for the entire urbanized area. METADATA DEM: Digital Elevation Model NDVI: Normalized Difference Vegetation Index LST: Land Surface Temperature _urb: Urban values (all urban pixels within urbanized areas) _rur: Rural reference (Spatial mean of the non-urban, non-water pixels within the region of interest) Regions of Interest: _CT: Spatial mean of pixels intersecting the Census Tract clipped to the urbanized area (one value per census tract). This should be equal to the _CT for census tracts that are completely within the urbanized areas (the census tracts with the green dots in the image below) _all: Spatial mean of all pixels intersecting the urbanized area, as defined by the US census (one value for one urbanized area) _CT_act: Spatial mean of all available pixels intersecting the Census Tract (one value per census tract) [This should be equal to the previous values I calculated] For the UHI: The ideal configuration is LST_urb_all-LST_rur for the entire urbanized area and LST_urb_CT_act-LST_rur for individual census tracts within the urbanized areas For the equity analysis: Either _CT or CT_act can be used if we are only concerned with spatial variation. Using CT_act leads to mismatch between census data for the tracts crossing the urban boundary and the remotely sensed data. Using _CT leads to mismatch between the UHI analysis and the equity analysis.
DOI: 10.17909/t9g593
title: Outer Planet Atmospheres Legacy ("OPAL")

description: OPAL is a project to obtain long time baseline observations of the outer planets in order to understand their atmospheric dynamics and evolution as gas giants. The yearly observations from OPAL throughout the remainder of Hubble's operation will provide a legacy of time-domain images for use by planetary scientists. The project will ultimately observe all of the giant planets in the solar system (Jupiter, Saturn, Uranus, and Neptune) in a wide range of filters. The images are processed using an ellipsoid limb-fitting technique, with an additional fringe correction applied to the narrow-band filters only (e.g., FQ889N for Jupiter 2014-2015), which amounts to a few percent correction. Mosaics are created for each observed filter in a projection that spans 360 degrees of longitude.