cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/z8km7746tp
title: Mechanical signaling through membrane tension induces somal translocation during neuronal migration

description: Neurons migrate in a saltatory manner by repeating two distinct steps: extension of the leading process and translocation of the cell body. The former step is critical for determining the migratory route in response to extracellular guidance cues. In the latter step, neurons must generate robust forces that translocate the bulky soma against mechanical barriers of the surrounding three-dimensional environment. However, the link between the leading process extension and subsequent somal translocation remains unknown. By using scanning ion conductance microscopy, we show that leading process extension increases plasma membrane tension. The tension elevation activated mechanosensitive ion channels and triggered Ca2+ influx, leading to actomyosin activation at the rear of the cell. Blockade of this signaling pathway disturbed somal translocation, thereby inhibiting neuronal migration in three-dimensional environments. Thus, mechanical signaling through plasma membrane tension links the leading process extension to somal translocation, allowing rapid and saltatory neuronal migration.
DOI: 10.17632/zhrfjfzf39
title: Origins of International Factor Structures

description: Replication code and data for Origins of International Factor Structures by Zhenyang Jiang and Robert Richmond
DOI: 10.6084/m9.figshare.3557202.v1
title: Appendix C. Data and parameter estimates for 102 species of North American migratory birds that use powered flight.

description: Data and parameter estimates for 102 species of North American migratory birds that use powered flight.
DOI: 10.17632/5kp6h6ttx3
title: Codes and Data Package: A Counterfactual Economic Analysis of COVID-19 Using a Threshold Augmented Multi-Country Model

description: This package contains the data as well as the Matlab files needed to replicate the empirical findings in "A Counterfactual Economic Analysis of COVID-19 Using a Threshold Augmented Multi-Country Model", forthcoming in Journal of International Money and Finance. Abstract: This paper develops a threshold-augmented dynamic multi-country model (TGVAR) to quantify the macroeconomic effects of Covid-19. We show that there exist threshold effects in the relationship between output growth and excess global volatility at individual country levels in a significant majority of advanced economies and in the case of several emerging markets. We then estimate a more general multi-country model augmented with these threshold effects as well as long term interest rates, oil prices, exchange rates and equity returns to perform counterfactual analyses. We distinguish common global factors from trade-related spillovers, and identify the Covid-19 shock using GDP growth forecast revisions of the IMF in 2020Q1. We account for sample uncertainty by bootstrapping the multi-country model estimated over four decades of quarterly observations. Our results show that the Covid-19 pandemic will lead to a significant fall in world output that is most likely long-lasting, with outcomes that are quite heterogenous across countries and regions. While the impact on China and other emerging Asian economies are estimated to be less severe, the United States, the United Kingdom, and several other advanced economies may experience deeper and longer-lasting effects. Non-Asian emerging markets stand out for their vulnerability. We show that no country is immune to the economic fallout of the pandemic because of global interconnections as evidenced by the case of Sweden. We also find that long-term interest rates could fall significantly below their recent lows in core advanced economies, but this does not seem to be the case in emerging markets.
DOI: 10.17632/s62ycm698z
title: Bali Hotel Reviews Dataset

description: The dataset comprises a curated collection of hotel reviews obtained from multiple hotels in Bali, Indonesia. These reviews have been systematically labeled based on six distinct aspects of the hotels, namely Value, Accessibility, Service, Room, Cleanliness, and Sleep Quality. The primary objective of this dataset is to facilitate the classification of consumer reviews, thereby enabling the development of a recommendation system based on natural language processing (NLP). The data was acquired through a web scraping process using the Google Chrome's Web Scraper Extension on the Tripadvisor platform.  Researchers can utilize this dataset for various NLP tasks, including hotel reviews classification and related analyzes.
DOI: 10.6084/m9.figshare.5126896.v1
title: Supplementary Material for: Bifunctional T-Cell-Derived Cytokines for the Diagnosis of Tuberculosis and Treatment Monitoring

description: <b><i>Background:</i></b> Diagnosis and treatment monitoring of patients with tuberculosis remain challenging. <b><i>Objective:</i></b> We have evaluated whether <i>Mycobacterium</i>-specific interferon (IFN)-γ and interleukin (IL)-2 bifunctional cytokine immune response assays improve the diagnosis of and correlate to treatment response in pulmonary tuberculosis. <b><i>Methods:</i></b> Early secretory antigenic target (ESAT)6/culture filtrate protein 10 (CFP10), microsomal triglyceride transfer protein 65 (MTP65) and the purified protein derivative (PPD) tuberculin-specific immune profiles were investigated in peripheral blood mononuclear cells from 19 patients with culture-confirmed tuberculosis and 23 healthy community controls (HCCs; 82.6% with latent <i>M. tuberculosis</i> infection) using a novel fluorescence-based dual-colour enzyme-linked immunospot (EliSpot) technology (FluoroSpot). <b><i>Results:</i></b> The frequency of ESAT6/CFP10-induced IFN-γ+IL-2- producing cells was elevated (p &lt; 0.001), whereas the percentages of specific IFN-γ-IL-2+ (p = 0.002) and IFN-γ+IL-2+ double producing cells (p = 0.037) were diminished in tuberculosis patients in comparison to HCCs. A 3-host marker model using a combination of those IFN-γ and IL-2 single-cell responses showed 93.8% sensitivity and 77.8% specificity for tuberculosis. During tuberculosis treatment, the PPD-induced immune responses shifted from an IFN-γ+IL-2- dominated profile towards a balance of IFN-γ-IL-2+ and IFN-γ+IL-2+ double producing cells (all p ≤ 0.05). <b><i>Conclusions:</i></b> The addition of antigen-specific IL-2 production to IFN-γ responses by EliSpot in IFN-γ release assays increases diagnostic sensitivity for active tuberculosis.
DOI: 10.6084/m9.figshare.c.3918607_d4.v1
title: Additional file 4: Table S3. of Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection

description: qPCR additional data: minus RT values, standard curves. (XLSX 42 kb)
DOI: 10.17632/gmrbf9r7v6
title: Systems biology identifies that regulation of type I interferon signaling is involved in the anti-atherogenic effects of andrographis paniculata

description: Andrographis paniculata (Burm. f.) Wall. ex Nees is a medicinal herb widely used in many Asian countries. Currently, there is little information about the effects and underlying mechanisms of whole andrographis paniculata plant on the development of atherosclerosis. To address this question, we carried out experiments in mouse primary peritoneal macrophages treated with crude serum preparations isolated from normal rats receiving vehicle or andrographis decoction treatment. Genome-wide mRNA sequencing revealed that ~70% of the genes regulated by lipopolysaccharides were reversed by andrographis. Further bioinformatics analysis indicated that andrographis inhibited type I interferon signaling. Given the established pathogenic effects of type I interferons in atherosclerosis, our results suggest that regulation of the type I interferon signaling in macrophage cells is partly involved in the anti-atherogenic effects of andrographis paniculata.
DOI: 10.17632/ppgy5pg26c
title: Use of composted manure and pig slurry to replace mineral fertilisers in the basal fertilisation of maize: impacts on GHG emissions and yield

description: Portuguese farmers seek evidence that organic fertilisers, particularly manure-based ones, can be safely used as partial replacements for mineral fertilisers (MF), taking advantage of their nutrient and organic matter (OM) content. This study aimed to clarify the effects of applying organic fertilisers, especially under no-till practices in maize production. The experiment involved replacing 30% of basal mineral nitrogen (N) fertilisation with composted animal manure (CM) and pig slurry (PS) across three contrasting fields with varying soil characteristics, tillage techniques, and OM supplementation. Results indicated that site 1, which had the lowest clay and OM content, benefited the most from organic fertilisers, particularly in enhanced nutrient absorption in both leaves and grain. In this site, partial nutrient balance of N was significantly higher in the PS treatment (0.56 kg grain N exported kg N applied-1) compared with the treatment with only MF (0.44). The impacts on greenhouse gas (GHG) emissions depended on site characteristics. CM led to higher emissions at site 2 (CH4) and site 3 (N2O), while PS did not increase GHG emissions at any site. Under no-till practices at site 3, CM resulted in higher global warming potential (154 kg CO2-eq ha-1) compared with the PS (128 kg CO2-eq ha-1) and MF (109 kg CO2-eq ha-1) treatments. Overall, this study suggests that organic fertilisers, particularly pig slurry, can be a viable strategy for improving soil health and maintaining sustainable maize production in Portuguese agriculture, especially in soils with lower OM content and under no-till practices.
DOI: 10.6084/m9.figshare.19660587.v2
title: Figure 5 - calcium activity in the anterior constriction

description: Each .mat file contains the processed GCaMP fluorescence activity from imaging calcium pulses in the anterior constriction of the midgut.<br> <br> Each dataset contains a kymograph for a particular embryo.<br> The position relative to the constriction location is stored as apGrid, and the timestamps for the kymograph are stored as timeGrid. sinterp gives the estimated background signal as a kymograph. dinterp gives the estimated transient activity, which is the difference between adjacent images, summed across the lateral axis (vertical axis in the images):<br> dinterp = (|I1-I2| + |I1-I3| + |I2-I3|)/3 - sinterp, <br> where sinterp is the estimated background taken as the minimum of each image difference min(|I1-I2|, |I1-I3|, |I2-I3|).<br> Here I1 would be the 1D measure of GCaMP fluorescence of the maximum intensity projection of the first of three rapidly-acquired confocal stacks parameterized by position along the AP axis of the organ. <br> <br> <br> In addition, xfixed is a parameterization of the AP axis for time-averaged activity measures activity00, activity05, activity10, activity15, etc. Here activityXX corresponds to the mean activity measured across the first XX minutes after the onset of constriction.
DOI: 10.17632/4p7yyg8zy3
title: IMEC8_Suvajit

description: Database construction for the IMEC ICIO model consisting of 8 countries and one rest of the world.
DOI: 10.17632/nwsbznpzx7
title: FISHERIES AND PLASTIC POLLUTION DATASET

description: The database comprises information on the impacts of marine plastic waste on the artisanal fishing sector. Data were collected through surveys administered to artisanal fishermen in Ecuador and Peru. The database and its coding are formatted in SPSS.
DOI: 10.17632/p4n85smvms
title: AI-Driven Wireless Network Anomaly Detection Dataset

description: This dataset is designed for machine learning-based anomaly detection in wireless communication networks. It contains channel measurement data collected from different propagation environments, including Rural Macro (RMa) and Urban Macro (UMa) scenarios with Line-of-Sight (LoS) and Non-Line-of-Sight (NLoS) conditions.

Source & Collection Process
Based on 3GPP TR 38.901 standard channel models.
Simulated using QuaDRiGa and real-world propagation conditions.
Feature extraction performed using Space-Alternating Generalized Expectation-Maximization (SAGE).
DOI: 10.17632/yr87kr8wbz
title: Data from Park et al. (2022) Current Biology

description: Confocal micrographs used for the quantitation of relocation of Golgi resident proteins to mitochondria.  The images can be opened in Fiji/ImageJ.  Images were used to obtain the data that is plotted in graphs in the Figures stated in the folder names.
DOI: 10.17632/zddmpj95rj
title: Clinical Practice Guidelines for the Management of Basal Cell Carcinoma in Gorlin Syndrome

description: Supplementary Tables and Figures
DOI: 10.17632/kx8p6rbxsj
title: Data for publication

description: Data for publication in Information and Software Technology
DOI: 10.17632/sgxmgf47sb
title: Using spatial capture-recapture models to estimate spotted hyaena (Crocuta crocuta) population density and assess the influence of sex-specific covariates on space use and detection probability.

description: Despite being resident or reintroduced to multiple South African protected areas, spotted hyaena (Crocuta crocuta) have been subject to limited population monitoring and are not managed in the same intensive way as other large carnivores. Considering the species’ significant influence on ecosystem processes, robust estimates of population density are necessary to inform conservation management. In this study, we ran a single-season camera trap survey in the Main Camp section of Addo Elephant National Park (Addo), South Africa, and used spatial capture-recapture (SCR) models to estimate spotted hyaena population density. Spotted hyaena density was estimated to be 11.13 (± SE 1.96) individuals/100 km2, with an estimated abundance of 37 (± SE 6.44). Using our database of sexed spotted hyaena individuals, we found no significant difference for sex-specific SCR parameters (baseline encounter probability and spatial scale parameter), suggesting the incorporation of sex-specific information may not be as necessary for spotted hyaena as it is for territorial felids and other species with more pronounced differences in range size. Spotted hyaena density in Addo was comparable to previous SCR studies and towards the higher end of known densities. Our estimate provides an important baseline for monitoring reintroduction success in Addo, and we advocate for increased SCR monitoring of spotted hyaena in South African protected areas to inform a metapopulation approach to the species’ management. These data include spotted hyaena capture histories and metadata (_edf and _tdf files) for SCR analysis of spotted hyaena density in Addo Elephant National Park, South Africa. We test the effects of distance to den site, camera type and sex on baseline encounter probability and space use. We include R code which covers step by step analysis and associated instructions. GPS locations of camera traps can be obtained by contacting the authors directly with prior written permission from SANParks due to the sensitivity of such locations in their priority species monitoring program. Original R Code supplied by author Dr Robert S. Davis
DOI: 10.6084/m9.figshare.4698166.v1
title: cf_driving_style_measures

description: Car following dataset and analysis source code for article "Trade-Off Between Jerk and Time Headway as an Indicator<br>of Driving Style"
DOI: 10.17632/4rh76gsxms
title: Data for: Fluvial flood inundation modeling: a comparative assessment of 1D and 2D hydraulic approach using MIKE+

description: Input and resulting data for flood extent and flow depth modeling via MIKE+ 1D and 2D hydraulic models.
DOI: 10.17632/c3kvmfsmdk
title: Data Set for In vivo Estimates of Liver Metabolic Flux Assessed by [13C3]Propionate and [13C3]Lactate are Impacted by Peripheral Tracer Recycling and Equilibrium Assumptions

description: Enrichment MIDs for 2H/13C Propionate studies, 2H/13C Lactate studies and 13C Lactate only studies.
DOI: 10.17632/kr5wzkzs58
title: Data for: The relationship between colostrum quality, passive transfer of immunity and birth weight in neonatal calves

description: Dataset as requested by reviewer.
DOI: 10.17632/wwbj4xnnmw
title: ISLME (Indonesian Seas Large Marine Ecosystem) Delineation 

description: This data contains the latitude and longitude of ISLME boundaries. The data can be opened in QGIS and ArcGIS software. The Indonesian Sea Large Marine Ecosystem (ISLME) includes the world’s largest archipelagic nation, Indonesia, with a coastline exceeding 54,716 km and an estimated 17,805 islands covering an area of 2.49 million km2, of which 1.49% is protected. The ISLME covers an approximate total of 2,329,816 km² (232 million hectares), with 98% within Indonesia’s territorial waters, and approximately 2% located within the territorial waters of Timor-Leste.
DOI: 10.17632/xwddjfn665
title: Review of mass distribution of wind turbine blades

description: A .csv file containing the mass distribution for 21 wind turbine blade models. Each mass distribution consists of 101 positions. Another .csv file include data related to blade length, rotor hub, mass/inertia/CoG as provided by manufacturer
A script file is accompanied that can be used to extract these data.
If you use it, please cite it as "Unveiling inertia constants by  exploring mass distribution in wind turbine blades and review of the drive train parameters", Angel Gaspar Gonzalez-Rodriguez, in Machines,
DOI: 10.6084/m9.figshare.28931690.v1
title: MDR-TB Dataset

description: Risk Factors associated with MDR-TB
DOI: 10.17632/bp4vdd53w3
title: [Dataset] A comparison of working conditions and workers’ perception among on-site, telework, and hybrid workers in Ecuador during the COVID-19 pandemic 

description: A self-administered close-ended questionnaire was conducted online to asses working conditions during the COVID-19 pandemic, workers´ perceptions of self-performance, and to gather sociodemographic characteristics of Ecuadorian workers. This anonymized database includes a total of 542 entries where nominal data is codified for analysis. Relevant data shows a statistically significant difference between the modalities according to educational levels, gross monthly salary, perceived change in the number of hours per workday, management time ability, and perceived productivity. Participation was voluntary and data was collected using a snowball method.
DOI: 10.17632/ptgxdphzw3
title: Load dataset

description: The present dataset is the combined details of hourly load variation along with the hourly varying weather parameters. The load dataset has been obtained from one of the substations (location Ahmedabad) and weather parameters dataset has been extracted from the NASA open-source website.
DOI: 10.17632/kdr3b4srbv
title: Data for: Effects of repetitive transcranial magnetic stimulation in combination with a low-carbohydrate diet in overweight or obese patients. A randomized controlled trial.

description: Patient's record for changes on weight after repetitive transcanail magnetic stimulaton + diet.
DOI: 10.17632/ms44g3222t
title: Risk of stillbirth following in vitro methods

description: This systematic review and meta-analysis assessed the risk of stillbirth following in vitro methods of conception (IVF, ICSI, with fresh or frozen embryo transfer) in comparison to non-in vitro methods of conception (which could include spontaneous conceptions, IUI, ovarian stimulation). Multiple subgroup analyses were completed to further define and explore this risk. Definitions of stillbirth after 20 weeks' gestational age were included. The main finding was an increased risk of stillbirth following in vitro methods compared to non-in vitro methods. This risk persisted when assessing in vitro methods vs. spontaneous conceptions only. The risk did NOT persist when assessing in vitro methods vs. patient with a history of infertility, but conceiving without in vitro methods (i.e. conceiving spontaneously with a history of infertility, IUI, ovarian stimulation). This data set includes descriptions of included studies, as well as data extracted from studies. The main estimate of effect was the odds ratio, which was chosen because adjusted odds ratio (from multiple logistic regression) account for important confounders such as maternal age, parity, and other obstetrical or medical conditions that increase the risk of stillbirth. Where adjusted odds ratio were not provided by studies, the numbers of total birth, live births, and stillbirths were extracted to calculate odds ratios. Studies were selected for inclusion in meta-analysis to avoid duplication of data i.e. in studies that overlapped in time and place (i.e. country), the study with the largest number of pregnancies was included in the analysis only.
DOI: 10.17632/w3dm6m942v
title: Music Score Data of Nine-Colored Deer: Rondo Sonata for Q1-Quantum Synthesizer and Piano

description: "Nine-Colored Deer" is an atonal rondo sonata composed for the Q1 – Quantum Synthesizer and piano, whose score was inspired by the "Deer King Jataka" mural from Cave 257 of the Mogao Grottoes in Dunhuang. In constructing the score, the Q1 – Quantum Synthesizer is used to generate nine distinct timbres, each corresponding to the colors of the Dunhuang murals—for example, the scene in which the Deer King rescues drowning people corresponds to the color red. The timbre-associated HMM-generated pitch sequences produce specific note sequences; in this case, the scene corresponds to pitches such as C, C#, E, G, G#, and so on. By computing the Ford number for each of the nine pitch sequences and deriving a rich variety of melodic material variations based on set prototype theory—with 4-note and 5-note sequences as the core material and an overall inclination toward a pentatonic mode—the work retains traditional Chinese musical characteristics while employing modern atonal compositional ideas.

It adopts a rondo sonata form: the exposition presents the "struggle" narrative through the first four sequence motives, with the Q1 – Quantum Synthesizer adding color to the music; the development section expands the melodic material, with the piano part becoming increasingly complex to depict "confrontation"; and the recapitulation, through a dominant relationship descending by a fifth, reintroduces variations from the exposition to convey "tranquility." In the musical arrangement, the tempo starts at an allegro moderato and undergoes various changes, with time signatures including 4/4, 6/8, and 3/4. By coupling a quantum random walk algorithm with an HMM music generation module, a three-dimensional randomized system of timbres and pitch sequences is realized, allowing the music to progress in an orderly manner amid complex variations, vividly narrating the story, and effectively translating the visual art of the mural into auditory musical art.

The database PDF comprises three parts: the score, a sequence design table, and the Allen Ford pitch-class set sequence table.