cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/77971834a81d9acf1ea0a40278b843ec
title: Long-term monitoring of ground-dwelling arthropods in the greater Phoenix metropolitan area of central Arizona, USA (1998-2025)

description: The Central Arizona–Phoenix Long-Term Ecological Research (CAP LTER) program has been monitoring ground-dwelling arthropods (e.g., insects, ararchnids) at locations throughout the greater Phoenix metropolitan area (GPMA) and surrounding Sonoran desert region since 1998. Monitoring locations span a diversity of habitat types, including mesic and xeric residential yards, commercial areas, agricultural fields, desert locations within the GPMA (desert remnant), and undisturbed desert locations. Organisms are collected quarterly using unbaited pitfall traps, typically ten per location but with some variation, exposed for approximately seventy-two hours. Organisms are identified to the lowest practical taxonomic level and enumerated. Many of the sampling locations established at the beginning of the monitoring project were relocated in 2001-2002 to overlap with the CAP LTER's Ecological Survey of Central Arizona (ESCA; formerly named Survey200) long-term monitoring sites, although within the same general landscape categories.
DOI: 10.17909/p4qv-4p68
title: 3I/Atlas MIRI MRS

description: Observations of the third interstellar object, 3I/Atlas, with JWST MIRI MRS, taken on December 15/16 and December 27. Dataset contains on-target observations as well as associated backgrounds.
DOI: 10.5061/dryad.dncjsxm8c
title: Tissue-specific transcriptomics uncovers novel craniofacial genes underlying jaw divergence in specialist pupfishes

description: The regulation of gene expression is one of the key evolutionary processes
 driving phenotypic divergence among species. Here, we investigate the
 tissue-specific gene expression of a non-model adaptive radiation
 of Cyprinodon pupfishes, characterized by their
 divergent dietary niches and exceptionally fast rates of craniofacial
 evolution. By comparing tissue-specific gene expression in the most
 morphologically divergent skeletal structure, the oral jaws, with the
 relatively morphologically conserved caudal tail region, we identified
 genes that were differentially expressed exclusively in the developing
 jaws of each of the three trophic specialists at hatching (8 dpf) and not
 in any other species. We then assessed their overlap (as
 transcriptionally-regulated genes) with adaptive regulatory variants
 identified in previous genomic studies. Our analysis
 identified pycr3 and atp8a1 as the
 most promising for craniofacial evolution in the scale-eaters, both genes
 with no known previous craniofacial function. We functionally confirmed
 the craniofacial expression of these genes by in situ mRNA
 hybridization chain reaction and demonstrated their species-specific
 expression in branchial and muscle tissues between sister species of this
 young radiation. Our work underscores the power of integrating
 tissue-specific transcriptomics with speciation genomics to identify novel
 craniofacial candidate genes controlling divergent morphogenesis in a
 natural ‘evolutionary mutant’ system.
description: Description here https://github.com/fishfena/JAWesome_RNAproject and in the manuscript
description: # Tissue-specific transcriptomics uncovers novel craniofacial genes
 underlying jaw divergence in specialist pupfishes
 [https://doi.org/10.5061/dryad.dncjsxm8c](https://doi.org/10.5061/dryad.dncjsxm8c) ## Description of the data and file structure Counts for 7 tissue-specific pupfish transcriptomes at hatching (8 dpf) Tissues: Jaw (J), Tail (T). Populations: Crescent Pond (C), Osprey Lake (O), Little Lake (L), Chihuahua (F), North Carolina (N). Species: Cyprinodon desquamator (P), Cyprinodon variegatus (A), Cyprinodon brontotheroides (M), Cyprinodon fontinalis (F), Cyprinodon sp. 'wide-mouth' (S). Diet: Generalist (A), Scale-eater (P), Molluscivore (M), Intermediate scale-eater (S). ### Files and variables The file name is, First character: Pupfish population Second character: Pupfish Species Third character: Replicate Fifth character: Tissue ## Access information https://www.biorxiv.org/content/10.1101/2024.10.02.616385v1.full https://github.com/fishfena/JAWesome_RNAproject
DOI: 10.5061/dryad.tmpg4f57q
title: Supplementary data of chloroplast genome of a centennial olive tree from the Peruvian coast

description: Olive (Olea europaea Linaeus 1753) is one of the valuable fruit trees and
 very important edible oil plant in the world. The chloroplast (cp) genome
 of an olive tree (Olea europaea) from the southern Peruvian arid coast was
 obtained for the first time. Genomic DNA of high quality was used to
 generate librarieswith Illumina Hiseq paired-end methods. The cp genome is
 155,886 pb in length and contains a large single-copy region (LSC) of
 86,610 pb and a small single copy region (SSC) of 17,790 pb separated by
 two inverted repeat (IR) regions (25,741bp). The cp genome of olive
 contains 124 genes that consists of 80 protein-coding genes, 36 tRNA,
 eight rRNA. Phylogenetic analysis showed this olive tree is sister to O.
 europaea subsp. maroccana (Oleeae tribe). This study presents the first
 overview of the chloroplast genome organization and phylogenetics of O.
 europaea, offering valuable insights for genetic and evolutionary research
 in the genus Olea.
description: We submitted the following: * Data. Aligned dataset (187,111 bp) used for
 phylogenetic analysis.  * Supplementary Figure 1. Average depth of
 coverage. * Supplementary Figure 2. Cis-splicing genes. * Supplementary
 Figure 3. Trans-splicing genes. Descriptions To understand the
 phylogenetic position of Olea europaea, a maximum likelihood (ML) tree of
 19 genomes retrieved from GenBank was reconstructed. First, we employed
 MAFFT v.7.475 to align those genomes. Then, with a GTR + GAMMA model of
 evolution, we obtained the best-scoring ML tree, considering 1,000
 bootstrap (BS) inferences with RAxML v8.2.11. We employed capirona
 (*Calycophyllum spruceanum*) cp genome as an outgroup (OK326865). The
 aligned data that was employed for the phylogenetic analysis consists of
 187,111 bp.
DOI: 10.5061/dryad.bzkh189kk
title: PacBio whole-genome sequencing and draft assembly of Stentor coeruleus

description: Stentor coeruleus is a giant, regenerating unicellular ciliate.
 These cells reach lengths upwards of 1 mm in length, and the
 compartmentalized macronucleus extends along the anterior-posterior axis
 of the cell. The reference genome for this species (Slabodnick et al 2017)
 was sequenced using short-read Illumina sequencing. Here, we are sharing
 raw PacBio sequencing data as well as a draft genome assembly. These data
 will be used to update the Stentor coeruleus reference genome and
 aid in future studies.
description: <em>Stentor husbandry</em>
 <em>Stentor coeruleus </em>cultures are kept in glass
 Pyrex tupperware dishes in approximately 200 mL of Pasteurized Spring
 Water (Carolina Biological), hereafter referred to as ciliate water. Cells
 are fed a lentil-sized amount of solid wild-type <em>Chlamydomonas
 reinhardtii </em>(Chlamy) two or three times a week as
 needed.  <em>DNA </em>extraction 
 Several hundred <em>Stentor coeruleus </em>were
 hand-picked from the culture with a micropipette and transferred to 3
 different tissue culture plate wells containing ciliate water to rid the
 cells of algae and debris. Cells were starved overnight and washed again
 to ensure that no remaining Chlamy will contaminate the extraction. Cells
 were transferred into an eppendorf tube, allowed to settle, and as much
 ciliate water as possible was removed. DNA was phenol-chloroform extracted
 according to a PacBio protocol: https://www.pacb.com/wp-content/uploads/2015/09/SharedProtocol-Extracting-DNA-usinig-Phenol-Chloroform.pdf <em>Sequencing</em> Genewiz (formerly) Azenta prepared libraries for two runs on a PacBio Sequel II.  <em>Assembly</em> Flye command: <em>flye combined.fastq --out-dir 20240503_flye_out --genome-size 80m --threads 16</em>
description: # PacBio whole-genome sequencing and draft assembly of Stentor coeruleus
 [https://doi.org/10.5061/dryad.bzkh189kk](https://doi.org/10.5061/dryad.bzkh189kk) ## Description of the data and file structure We combined both replicates into one fastq file and assembled the genome using Flye. This project is ongoing, thus we have not trimmed any sequences and are working to improve the assembly and add gene annotations.  Assembly information (12/12/2024 upload): Total length: 62416934 Fragments: 371 Fragments N50: 373482 Largest frg: 1584040 Scaffolds: 1 Mean coverage: 66### Files and variables #### File: 1\_scoelr001.hifireads.fastq.gz **Description:** PacBio Sequel II raw reads replicate 1 #### File: 2\_scoelr001.hifireads.fastq.gz **Description:** PacBio Sequel II raw reads replicate 2 #### File: assembly.fasta **Description:** Draft genome assembly with Flye
DOI: 10.15468/dl.qnvbec
title: Occurrence Download

description: A dataset containing 3735 records in GBIF matching the query:
SELECT
 '499' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 51.21395264452012
 AND decimalLatitude &lt;= 56.135291543055025
 AND decimalLongitude &gt;= -100.73714263693424
 AND decimalLongitude &lt;= -86.85869421308222
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 3735 records were derived from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004148-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.mw6m9065r
title: Data from: Stable directional sexual selection and repeatable choosiness for song preference in the Pacific field cricket Teleogryllus oceanicus

description: Choosiness, or how picky an individual is in mate choice, is key to both
 sexual selection and speciation. Yet the amount of phenotypic variation in
 choosiness and how that variation is partitioned among individuals remains
 largely unexplored. Here, using the Pacific field cricket Teleogryllus
 oceanicus, we dissect preference for two song traits, proportion of long
 chirp and interpulse interval. We subsequently quantify phenotypic
 variation in choosiness and investigate whether there is consistent
 individual variation in choosiness and whether choosiness for different
 song traits covaries. Strikingly, we found that the overall shape and peak
 preference for the proportion of long chirps remained similar to those
 reported in an earlier study from the same population more than a decade
 ago, providing evidence that directional sexual selection can be
 relatively stable over long time frames in wild populations. Further, we
 found moderate levels of within-individual repeatability in choosiness for
 both song traits, suggesting a substantial level of individual variation
 in choosiness. Interestingly, choosiness for the two song traits
 positively covaries, indicating that there may exist overall choosier and
 more permissive females in song preference.
description: # Teleogryllus choosiness data
 [https://doi.org/10.5061/dryad.mw6m9065r](https://doi.org/10.5061/dryad.mw6m9065r) ## Description of the data and file structure * **The Excel file (Teleo_pref_resp_all_12-18-24)** contains original behavioral data (in which missing data is represented as "." and not determined data is given as n/a) and the metadata from the experiment. This file includes two tabs: **Data**: include all original data **Header decoder**: contains an explanation for the columns in the data tab - **Teleogryllus choosiness supplementary Material v.2.pdf** contains supplementary methods and figures * **Table S1** contains parameter values for the simulated songs used in the behavioral trials * **Table S2** contains number of females and trials included in the two methods of analyses - **Table S3** contains repeatability as measured by intraclass correlation (ICC) coefficient and standard error of female response at each stimulus for two song traits using the permissive datasets (all estimations significant unless noted otherwise) - the **two .rtf files** contain R code for running all the analyses. "preforiginal.rtf" contains scripts for analyses using the original dataset and "pref_permissive.rtf" contains scripts for analyses using the permissive dataset. For explanation of the two datasets, please refer to the Methods section
DOI: 10.15139/s3/0bly5p
title: Data Management and Sharing Plan for: An exploration of Black residents' resilience and mental health in the face of climate change

description: The Data Management and Sharing Plan describes the scientific data to be generated and/or used in the research and outlines a strategy for managing and sharing project data.
description: Data Management and Sharing Plan
DOI: 10.15468/dl.qpthpr
title: Occurrence Download

description: A dataset containing 6338 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sebastes oculatus",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 6338 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004163-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/mblrzw
title: Replication data for: Arras, S. and J. Beyers (2019) Access to European Union agencies. Usual suspects or balanced interest representation in open and closed consultations? Journal of Common Market Studies (in press)

description: To facilitate stakeholder representation, European Union (EU) agencies use a range of procedures, including closed consultation or advisory committees and open or public consultations. For analysing what kind of stakeholders gain access to advisory committees, we compare these two particular procedures. Two theoretical perspectives guide this analysis. The first is a resource-based account, which emphasizes informational needs and leads to the expectation that not only regulated interests but also EU-level associations and European Commission expert group members will gain representation through closed consultations. The second is a norm-based perspective that stresses the importance for agencies to establish a credible reputation, leading them to balance interest representation. A systematic comparison of stakeholders represented in agency committee with those participating in open consultations demonstrates that regulated interests have no systematic advantage in gaining access to closed consultations. Instead, closed consultations may diversify interest representation and facilitate the involvement of non-business interests.
DOI: 10.7910/dvn/qqq9iu
title: Replication Data for: Automated detection and monitoring of methane super-emitters using satellite data

description: GHGSat methane plume data for: Automated detection and monitoring of methane super-emitters using satellite data
DOI: 10.7910/dvn/vjuoov
title: Replication Data for: Labor Unions and White Racial Politics

description: Scholars and political observers point to declining labor unions on the one hand, and rising white identity politics on the other, as profound changes in American politics. However, there has been little attention to the potential feedback between these forces. In this article, we investigate the role of union membership in shaping white racial attitudes. We draw upon research in history and American political development to generate a theory of interracial labor politics, in which union membership reduces racial resentment. Cross-sectional analyses consistently show that white union members have lower racial resentment and greater support for policies that benefit African Americans. More importantly, our panel analysis suggests that gaining union membership between 2010 and 2016 reduced racial resentment among white workers. The findings highlight the important role of labor unions in mass politics, and, more broadly, the importance of organizational membership for political attitudes and behavior.
description: This dataset underwent an independent verification process that replicated the tables and figures in the primary article. For the supplementary materials, verification was performed solely for the successful execution of code. The verification process was carried out by the Odum Institute for Research in Social Science at the University of North Carolina at Chapel Hill. 
<br>
The associated article has been awarded Open Materials and Open Data Badges. Learn more about the Open Practice Badges from the Center for Open Science.<br>
DOI: 10.7910/dvn/wemj8r
title: Replication Data for: Evolution of Metastable Structures at Bimetallic Surfaces from Microscopy and Machine-Learning Molecular Dynamics

description: The data underlying this published work have been made publicly available in this repository as part of the IMASC Data Management Plan. This work was supported as part of the Integrated Mesoscale Architectures for Sustainable Catalysis (IMASC), an Energy Frontier Research Center funded by the U.S. Department of Energy, Office of Science, Basic Energy Sciences under Award # DE-SC0012573.
DOI: 10.7910/dvn/3qm00p
title: Executive Agreements Database, Statement Regarding Agreement Between The United States and The United Kingdom Concerning the Cooperative Outboard Logistics Update (and/SSQ-108-V) (COBLU) Project Signed At London and Washington June 7 and July 1, 1994

description: TIAS 12258

cover memo
DOI: 10.7910/dvn/g4tt0l
title: Post-processing data of plastic waste trade, 2010-2019

description: Post-processing data of plastic waste trade, 2010-2019
DOI: 10.7910/dvn/hjq9s8
title: CFL2 Vertical scotoma

description: Reaction time data for study in press at PLoS One entitled "Driving with Central Visual Field Loss II: How Scotomas Above or Below the Preferred Retinal Locus (PRL) 
Affect Hazard Detection in a Driving Simulator".
DOI: 10.7910/dvn/l3ycr
title: Senate Unpassed Legislation 1816, Docket 5299, SC1/series 231, Petition of Phebe Gould

description: &lt;p&gt;Petition subject: Property &lt;/p&gt; &lt;p&gt;Original: &lt;a href="http://nrs.harvard.edu/urn-3:FHCL:13448934"&gt;http://nrs.harvard.edu/urn-3:FHCL:13448934&lt;/a&gt; &lt;/p&gt; &lt;p&gt;Date of creation: 1816-06-11 &lt;/p&gt; &lt;p&gt;Petition location: Middleborough &lt;/p&gt; &lt;p&gt;Selected signatures:&lt;ol&gt;&lt;li&gt;Phebe Gould&lt;/li&gt;&lt;li&gt;Zerviah Johnson&lt;/li&gt;&lt;/ol&gt; &lt;/p&gt; &lt;p&gt;Total signatures: 2 &lt;/p&gt; &lt;p&gt;Females of color signatures: 2 &lt;/p&gt; &lt;p&gt;Female only signatures: Yes &lt;/p&gt; &lt;p&gt;Identifications of signatories: daughters and sole heirs in land of Lydia Squin late of Middleborough in the county of Plymouth in said Commonwealth Indian woman, [females of color] &lt;/p&gt; &lt;p&gt;Prayer format was &lt;a href="http://en.wikipedia.org/wiki/Printing"&gt;printed&lt;/a&gt; vs. &lt;a href="http://en.wikipedia.org/wiki/Manuscript"&gt;manuscript&lt;/a&gt;: Manuscript &lt;/p&gt; &lt;p&gt;Additional non-petition or unrelated documents available at archive: no additional documents &lt;/p&gt; &lt;p&gt;Additional archivist notes: Phebe Goold, Troy, Bristol county, lands, debts, sale, property, deeds, estate, includes note "Judith Bradbury and others" [possibly for the sale of lands?] &lt;/p&gt; &lt;p&gt;Location of the petition at the Massachusetts Archives of the Commonwealth: Senate Unpassed 1816, Docket 5299 &lt;/p&gt; &lt;p&gt;Acknowledgements: Supported by the National Endowment for the Humanities (PW-5105612), Massachusetts Archives of the Commonwealth, Radcliffe Institute for Advanced Study at Harvard University, Center for American Political Studies at Harvard University, Institutional Development Initiative at Harvard University, and Harvard University Library.&lt;/p&gt;
DOI: 10.7910/dvn/lof8kw
title: CCES 2018, Team Module of Duke University (1)

description: This dataverse contains the data and supporting documents for the CCES 2018 Duke University (1) team module. This project was supported by the National Science Foundation, Grant Number SES-1756447.
DOI: 10.7910/dvn/xrnumo
title: A91_3904.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/dc5050cd-70ad-f614-7f84-519f3c1fe40d'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/dc5050cd-70ad-f614-7f84-519f3c1fe40d
DOI: 10.7910/dvn/3yainm
title: A15_27134.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/b5cf5a2c-ab68-4756-a88c-b069f43a02ba'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/b5cf5a2c-ab68-4756-a88c-b069f43a02ba
DOI: 10.7910/dvn/9dsoal
title: A14_26382.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/657a4d99-b490-4a2a-a878-70ef00f9e0d4'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/657a4d99-b490-4a2a-a878-70ef00f9e0d4
DOI: 10.7910/dvn/fveqhe
title: Factors related to the Depression of Regular and Shift Women Workers : Using the Korea National Health and Nutrition Examination Survey (KNHANES) 2018

description: Purpose: This study examined health behaviors, use of health services, and depression among women who perform daytime and shift work in South Korea, as well as factors related to depression. 
Methods: We conducted a secondary analysis using data from the 7th Korea National Health and Nutrition Examination Survey conducted in 2018. Data on women, 1,493 regular daytime workers and 322 shift workers, were analyzed. 
Results: Shift workers were younger (χ2=43.97, p&lt;.001), had a lower education level (χ2=45.56, p&lt;.001), and lower personal income (χ2=16.85, p=.030) than daytime workers. A higher proportion of shift workers were unmarried (χ2=37.47, p&lt;.001) and they typically worked fewer than 40 hours per week (χ2=69.94, p&lt;.001). The depression score of shift workers was higher than that of daytime workers (t=2.85, p=.005). A higher proportion of shift workers also drank alcohol (χ2=6.49, p=.032) and smoked (χ2=30.79, p&lt;.001). Over 8% of shift workers typically slept fewer than 5 hours per night (χ2=14.17, p=.024). It was confirmed that depression in women shift workers was affected by age, personal income, marital status, health status, and smoking status, in addition to cancer screening participation, unmet medical care needs, and unmet dental care needs. 
Conclusion: More attention should be given to the health needs of women working shifts. Health promotion programs specific for women shift workers are needed to improve their physical and mental health, encourage use of medical care services, and improve public health policies and systems.