cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.js7q8b3/3
title: BirdTrack scripts 1-6

description: Zip file containing the full pipeline of R script files for analysing the provided BirdTrack data (see Readme for details).
DOI: 10.5061/dryad.js7q8b3/4
title: eBird_collated

description: Source files for analyses of eBird data from scratch (see Readme for details).
DOI: 10.5061/dryad.js7q8b3/5
title: eBird_obstimes_3hrs

description: Full eBird dataset that has been processed using 'obstimes' code of eBird script #1, but not subsetted per species (see Readme for details).
DOI: 10.5061/dryad.js7q8b3/6
title: All_eBird_spp_3hrs

description: Zipped folder of multiple eBird files subsetted by species using eBird script #2 (see Readme for details).
DOI: 10.5061/dryad.js7q8b3/7
title: All_eBird_spp_modeldata

description: Zipped folder of multiple eBird files containing model data for each species, produced using eBird script #3 (see Readme for details).
DOI: 10.5061/dryad.js7q8b3/8
title: Full_model_dataset_eBird

description: Rdata file of eBird model data for all species, produced using eBird script #4 (see Readme for details).
DOI: 10.5061/dryad.m40t6g7/1
title: Bacterial community, Bacterial Abundance, Bsal Infection, Cultured Isolate, and Metadata Associated with all Field Collection and Experiments

description: This file contains multiple tabs housing all data associated with Bacterial community, Bacterial Abundance, Bsal Infection, Cultured Isolate, and Metadata from all Field Collection and Experiments completed for this study.  The first tab within the Excel document contains a description of the tabs and the figures the data is associated within the manuscript.
DOI: 10.5061/dryad.pc548kj/1
title: Specimen Occurrence Records

description: These data are iDigBio specimen occurrence records downloaded from the iDigBio download API using the scripts found here: https://github.com/melanostomias/rstuff/tree/master/scripts 

Also found in this archive are intermediate data files used by the scripts to generate figures used in the preparation of this manuscript.
DOI: 10.5061/dryad.qm0bd40/1
title: Yewers et al 2018 Ecology and Evolution dataset

description: This file contains data on territory size, territory overlap and microsatellite genotypes of tawny dragon lizard male colour morphs.
DOI: 10.5061/dryad.tj30d/10
title: unique table post-filtration

description: Unique sequence table showing the OTUs (after removing water contaminants; see Methods and Results) identified in the MiSeq analysis of 107 samples analyzed by clustering identical (100%) sequences in mothur.
DOI: 10.5061/dryad.tj30d/11
title: unique_sequence_tabular_dryad

description: A table presenting all unique sequences identified in our study in both ant and ‘blank’ samples. From left to right (separated with tabs): a unique identifier, description of whether the sequence is a contaminant or ant specific (based on the 0.2 ratio), the number of times the sequence is present, the samples that the sequence is present (based on Table S1 in Supporting Information) and the nucleotide sequence.
DOI: 10.5061/dryad.tj30d/12
title: OTU97 table main ms filteredOTU97_84samples

description: A: OTU table showing the 2099 OTUs after rarefaction and removing ‘water’ contaminants (see Methods and Results) identified in the MiSeq analysis of the 84 samples that were amplified with standard PCR, analyzed by clustering 97% identical sequences in Mothur. As before, the table was rarefied at 8900 reads. only The 18 abundant OTUs according to our criterion of ≥10% prevalence in at least two samples, are highlighted with Bold print. B: The same OTU table before rarefaction. To facilitate reading and interpretation we have named the 98 OTUs of highest overall abundance (Fig. S3) using five letters that refer to their bacterial order followed by a specific number that identifies their overall prevalence rank. Six of them had previously been identified in the guts of three species of Acromyrmex leaf-cutting ants from the same sampling site, and retained their names from that study (ActAcro1, EntAcro1, EntAcro2, EntAcro10, RhiAcro1 and WolAcro1: Sapountzis et al. 2015).
DOI: 10.5061/dryad.tj30d/13
title: Supplementary Results 2

description: Examples of bacteria detected in various abdominal tissues, gut lumen and fat bodies of attine ant workers using confocal laser scanning FISH microscopy
DOI: 10.5061/dryad.tj30d/9
title: unique seqs pre-filtration blank_included

description: A: Unique sequence table showing the distribution of the sequences identified in the MiSeq analysis of 107 ant samples before filtering. B: Unique sequence table showing the sequences identified in the three ‘blank’/water samples, included in the MiSeq sequencing. To identify common sequences between ‘blank’ and ant samples we used local blast analyses. For the unique sequences that were present in both ant and ‘blank’ samples, we also show, at the right, the corresponding unique sequence numbers (IDs) in the ant sample table.
DOI: 10.5061/dryad.vh13401/1
title: Differential signaling Galr2 Spx Gal Fmoc-dA4-dQ14
DOI: 10.17632/37yh2r2v2t.1
title: Data for: Offsets in the early Danian recovery phase in carbon isotopes: evidence from the biometrics and phylogeny of the Cruciplacolithus lineage

description: Appendices 1 and 2 are biometric parameters (length, width, area, ellipticity) for early Danian coccoliths of Cruciplacolithus at the sections of Bidart and Elles. Appendix 3 is a Matlab script designed to draw density plots of such data. Appendix 4 is an example of how to organize the data for use in the script.
DOI: 10.17632/57bf5rcttm.1
title: Data for: Dispersion state of multi-walled carbon nanotubes in the UHMWPE matrix: Effects on the mechanical and tribological response

description: The data are used to characterise the influence of the MWCNTs state in the UHMWPE matrix, and in the tribological performance of the composites loaded with different concentrations of MWCNTs. The dispersion state of MWCNTs in the polymer matrix was assessed, along with the hardness and the wear performance. The tribological response was studied by evaluating the wear rate, fricition coefficient and wear debris.
DOI: 10.17632/dw4wkvfzkn.1
title: Data for: Load-Induced Seismicity near Tsaoling, Taiwan

description: supporting materials for a manuscript "Load-Induced Seismicity near Tsaoling, Taiwan" There are three files: The Central Weather Bureau seismicity catalog used in this manuscript; the three curves showing the bounds of crustal hydraulic diffusivity and permeability; and the focal mechanisms used for this study.
DOI: 10.17632/nbsxhf4mfm.1
title: Data for: Calcareous plankton and the Mid-Brunhes climate variability in the Alboran Sea (ODP Site 977)
DOI: 10.17632/v7vtr4j9k3.1
title: Data for: How Much Do Conditional Cash Transfers Increase the Utilization of Maternal and Child Health Care Services? New Evidence from Janani Suraksha Yojana in India

description: It should be noted that all data are analyzed in Stata 14. The data pack in rar contains data and do files.
DOI: 10.5061/dryad.19n37d1/1
title: Matlab code - Diel Vertical migration

description: This matlab code solves the replicator equation for two players (prey and predator) in a water column. Running the code with no modification will provide day-night positions for both prey and predator for a range of predator clearance rates.
DOI: 10.5061/dryad.1b776v2/1
title: Figure1Bmir181

description: Figure1Bmir181
DOI: 10.5061/dryad.1b776v2/2
title: Figure4Bmir181

description: Figure4Bmir181
DOI: 10.5061/dryad.1c9g5mm/10
title: min10.phy

description: Concatenated phylip alignment for the dataset containing minimum 10 samples per locus. See "params_Darter_m10_RAxML.txt" for more information on assembly parameters.
DOI: 10.5061/dryad.1c9g5mm/12
title: min30.phy

description: Concatenated phylip alignment for the dataset containing minimum 30 samples per locus. See "params_Darter_m30_RAxML.txt" for more information on assembly parameters.
DOI: 10.5061/dryad.1c9g5mm/5
title: min4.loci

description: Pyrad .loci file for the dataset containing minimum 4 samples per locus. See "params_Darter_m4_RAxML.txt" for more information on assembly parameters.
DOI: 10.5061/dryad.1c9g5mm/6
title: min10.loci

description: Pyrad .loci file for the dataset containing minimum 10 samples per locus. See "params_Darter_m10_RAxML.txt" for more information on assembly parameters.
DOI: 10.5061/dryad.1c9g5mm/7
title: min20.loci

description: Pyrad .loci file for the dataset containing minimum 20 samples per locus. See "params_Darter_m20_RAxML.txt" for more information on assembly parameters.
DOI: 10.5061/dryad.1c9g5mm/8
title: min30.loci

description: Pyrad .loci file for the dataset containing minimum 30 samples per locus. See "params_Darter_m30_RAxML.txt" for more information on assembly parameters.
DOI: 10.5061/dryad.1c9g5mm/9
title: min4.phy

description: Concatenated phylip alignment for the dataset containing minimum 4 samples per locus. See "params_Darter_m4_RAxML.txt" for more information on assembly parameters.
DOI: 10.5061/dryad.25kg375/1
title: ece-Sm-AFLP data

description: "ece-Sm-AFLP data" includes 0-1 matrix of entire loci, outliers and neutral dataset in different sheets for all individuals.
DOI: 10.5061/dryad.25kg375/2
title: ece-Sm-Mcheza

description: "ece-Sm-Mcheza" includes the list of potential loci under selection with MCHEZA, DFDIST and BAYESCAN software, respectively.
DOI: 10.5061/dryad.25kg375/3
title: ece-Sm-summary of FLOCK

description: This data includes the assignment test results from FLOCK analysis
DOI: 10.5061/dryad.421r174/1
title: Appendix S2

description: The raw data used in all meta-analyses for both survival and reproduction senescence rates models.
DOI: 10.5061/dryad.4467407/1
title: triseriatus75final

description: Concatenated alignment file of all 3384 loci.
DOI: 10.5061/dryad.4467407/2
title: UCE-loci

description: Zip file containing individual alignments for each UCE locus.
DOI: 10.5061/dryad.4467407/3
title: RAxML tree with support

description: ML tree inferred through concatenated analysis of all 3384 loci. Node values represent bootstrap values.
DOI: 10.5061/dryad.56g7v08/2
title: MATCONT_systems

description: Two systems were studied, numbered (2.4) and (3.19) in the paper. The codes for MATCONT6p10 for both systems are provided.
DOI: 10.5061/dryad.5d8k268/3
title: Reflectance data from flower species and strains used for the paper "Flower signal variability overwhelms receptor-noise and requires plastic color learning in bees" by Garcia et al. 2018

description: Zip file containing the reflectance spectra measured from Rosemarinus officinalis, Goodenia ovata and three strains of Antirrhinum majus used for the analyses. Data are stored as .csv files for each species/strain. Please refer to the README and the associated manuscript for details.
DOI: 10.5061/dryad.643r37b/1
title: Bd thermoregulation data and code Sauer_Erin

description: Metadata can be found in the first worksheet of the workbook.
DOI: 10.5061/dryad.821c3j3.1/1.1
title: Appendix S2
DOI: 10.5061/dryad.821c3j3.1/2.1
title: Appendix S1
DOI: 10.5061/dryad.821c3j3.1/3.1
title: Appendix S3 (2)
DOI: 10.5061/dryad.821c3j3.1/4.1
title: Appendix S4
DOI: 10.5061/dryad.821c3j3.1/5.1
title: Appendix S5
DOI: 10.5061/dryad.821c3j3.1/6.1
title: Appendix S6
DOI: 10.5061/dryad.83nj1.2
title: Data from: Spatiotemporal incidence of Zika and associated environmental drivers for the 2015-2016 epidemic in Colombia
DOI: 10.5061/dryad.83nj1.2/1.2
title: Weekly mean temperature at 2.5 arc-minutes

description: Raster brick of weekly mean temperature calculated as the average of the daily mean temperature (a total of 143 weeks between Jan 5, 2014 and Oct 1, 2016), in GRI format, at a resolution of 2.5 arc-minutes. Layer names indicate the date each week starts on. For example, the layer named tmean_wk151025 has mean temperature for the week that starts on October 25, 2015.
DOI: 10.5061/dryad.83nj1.2/2.2
title: Weekly minimum temperature at 2.5 arc-minutes

description: Raster brick of weekly minimum temperature calculated as the average of the daily minimum temperature (a total of 143 weeks between Jan 5, 2014 and Oct 1, 2016), in GRI format, at a resolution of 2.5 arc-minutes. Layer names indicate the date each week starts on. For example, the layer named tmin_wk151025 has minimum temperature for the week that starts on October 25, 2015.
DOI: 10.5061/dryad.83nj1.2/24.2
title: Weekly precipitation at 2.5 arc-minutes

description: Raster brick of weekly total precipitation calculated as the total of the daily precipitation (a total of 143 weeks between Jan 5, 2014 and Oct 1, 2016), in GRI format, at a resolution of 2.5 arc-minutes. Layer names indicate the date each week starts on. For example, the layer named precip_wk151025 has precipitation for the week that starts on October 25, 2015.
DOI: 10.5061/dryad.83nj1.2/3.2
title: Weekly maximum temperature at 2.5 arc-minutes

description: Raster brick of weekly maximum temperature calculated as the average of the daily maximum temperature (a total of 143 weeks between Jan 5, 2014 and Oct 1, 2016), in GRI format, at a resolution of 2.5 arc-minutes. Layer names indicate the date each week starts on. For example, the layer named tmax_wk151025 has maximum temperature for the week that starts on October 25, 2015.
DOI: 10.5061/dryad.83nj1.2/4.2
title: Weekly relative humidity at 2.5 arc-minutes

description: Raster brick of weekly average relative humidity calculated as the average of the daily mean relative humidity (a total of 143 weeks between Jan 5, 2014 and Oct 1, 2016), in GRI format, at a resolution of 2.5 arc-minutes. Layer names indicate the date each week starts on. For example, the layer named rh_wk151025 has average relative humidity for the week that starts on October 25, 2015.
DOI: 10.5061/dryad.83nj1.2/5.2
title: Weekly MODIS Terra NDVI at 2.5 arc-minutes

description: Raster brick of weekly average NDVI from NASA's Terra satellite and MODIS sensor (a total of 143 weeks between Jan 5, 2014 and Oct 1, 2016), in GRI format, at a resolution of 2.5 arc-minutes. Layer names indicate the date each week starts on. For example, the layer named ndvi_modis_terra_wk151025 has the NDVI values for the week that starts on October 25, 2015.
DOI: 10.5061/dryad.83nj1.2/6.2
title: Weekly MODIS Aqua NDVI at 2.5 arc-minutes

description: Raster brick of weekly average NDVI from NASA's Aqua satellite and MODIS sensor (a total of 143 weeks between Jan 5, 2014 and Oct 1, 2016), in GRI format, at a resolution of 2.5 arc-minutes. Layer names indicate the date each week starts on. For example, the layer named ndvi_modis_aqua_wk151025 has average NDVI for the week starting on October 25, 2015.
DOI: 10.5061/dryad.83nj1.2/7.2
title: Aedes aegypti population at 2.5 arc-minutes

description: Raster brick of ratio of Aedes aegypti population to human population at each week of the year (a total of 52 weeks), in GRI format, at a resolution of 2.5 arc-minutes.
DOI: 10.5061/dryad.8b83gn8/1
title: 2018 Ellison Molecular Ecology Rana sierrae skin microbiome Illumina sequences

description: Metabarcoding sequences generated using an Illumina MiSeq. Paired-end reads have been joined and demultiplexed using QIIME (this file is equivalent to the "seqs.fna" file generated by the QIIME script "multiple_split_libraries_fastq.py").
DOI: 10.5061/dryad.8b83gn8/4
title: 2018 Ellison Molecular Ecology Rana sierrae CFS inhibition trial results

description: Results for the cell-free supernatant inhibition trials conducted using bacteria isolated from the skin of Rana sierrae.
DOI: 10.5061/dryad.8b83gn8/5
title: 2018 Ellison Molecular Ecology Rana sierrae CFS inhibition sequences

description: FASTA file containing DNA sequences for the bacterial isolates included in the cell-free supernatant inhibition trials.
DOI: 10.5061/dryad.8b83gn8/6
title: 2018 Ellison Molecular Ecology Rana sierrae Bd results

description: Bd results (qPCR) and associated metadata for all Rana sierrae included in the study.
DOI: 10.5061/dryad.8b83gn8/7
title: 2018 Ellison Molecular Ecology Rana sierrae microbiome QIIME mapping file

description: Mapping file containing sample metadata for all microbiome samples included in the study. Used to analyze microbial communities in QIIME.
DOI: 10.5061/dryad.940m2.1
title: Data from: Invasive cane toads are unique in shape but overlap in ecological niche compared to Australian native frogs
DOI: 10.5061/dryad.940m2.2
title: Data from: Invasive cane toads are unique in shape but overlap in ecological niche compared to Australian native frogs
DOI: 10.5061/dryad.940m2.2/2.2
title: Phylo_morpho_dataset_Vidal-Garcia_Keogh_EcolEvol2017
DOI: 10.5061/dryad.940m2.2/3.2
title: Means_raw_morpho_dataset_Vidal-Garcia_Keogh_EcolEvol2017
DOI: 10.5061/dryad.b3d257g/1
title: Region-wise radiomic & histomorphometric features from 2 sites
DOI: 10.5061/dryad.cq5h55f/1
title: Dry Matter Yield

description: please see Readme file
DOI: 10.5061/dryad.fr88s7f/2
title: GGP HD150K SNP data for 5 breeds of Asian origin

description: This set includes autosomal genotypes for 3 Russian breeds of Asian origin on the GeneSeek HD150K SNP array (MAF&lt;0.05): Kalmyk, Yakut, and Buryat combined with the sequence-based genotypes of Hanwoo and Illumina HD based genotypes of Japanese Black breeds.
DOI: 10.5061/dryad.fr88s7f/3
title: GGP HD150K SNP data for 10 breeds of European origin

description: This set includes autosomal genotyping data for 6 Russian breeds of European origin genotyped on the GeneSeeek HD150K SNP array (MAF&lt;0.05):  Bestuzhev, Black Pied, Kazakh Whiteheaded, Kholmogory, Kostroma, and Yaroslavl combined with sequence-based genotypes of Angus, Holstein, Jersey, and Fleckvieh from the 1000 bull genome project.
DOI: 10.5061/dryad.fs6kv67/1
title: SARBB SIM data (Dryad)

description: Microsoft Access raw data file. Raw statistical data generated by the Stat-A-Rama proprietary baseball simulation application during the 162 game simulation.
DOI: 10.5061/dryad.fs6kv67/2
title: RRPI data (Dryad)

description: This Excel data file contains:
[1] Compiled aggregate batting and pitching statistics for the Stat-A-Rama 162 game simulation
[2] Win/Loss matchup data for the simulation
[3] Pitching and batting data by game for the simulation
[4] Linescores for all 162 games of the simulation
[5] Raw residual base-state data as generated after each at-bat for the 162 game simulation
[6] Simulation vs Real ARRP and RRPI values as complied for each player utilized during the 162 game simulation
[7] RRPI calculation tool and instructions
DOI: 10.5061/dryad.g05350g/5
title: TGA plot

description: The TGA measurement referred to in the paper (alkali loss observed at elevated temperatures), plotted.
DOI: 10.5061/dryad.g05350g/6
title: TEM image of plate-like grains

description: TEM image of plate-like grains at the surface of the KNN-ES-100 thin film, as referred to in the paper.
DOI: 10.5061/dryad.g69c080/1
title: Upstream swimming

description: Recorded data for upstream swimming across various flow trails
DOI: 10.5061/dryad.g69c080/2
title: PushBack

description: Recorded data for when fish were pushed backwards by flow across various flow trails
DOI: 10.5061/dryad.g69c080/3
title: StationHolding

description: Recorded data for station holding across various flow trails
DOI: 10.5061/dryad.g69c080/4
title: Downstream

description: Recorded data for downstream swimming across various flow trails
DOI: 10.5061/dryad.g69c080/5
title: c-start

description: c-start raw data across all trials
DOI: 10.5061/dryad.g69c080/8
title: Proportianal analysis

description: Time fish spent in various areas of the flume as a proportion
DOI: 10.5061/dryad.gq2756n/1
title: Marchini et al 2018 Measured Traits

description: Spreadsheet of phenotypic trait data. Column definitions included on sheet 2.
DOI: 10.5061/dryad.h3390h5/1
title: Furnariides MCC tree

description: MCC phylogenetic tree for the Furnariides infraorder
DOI: 10.5061/dryad.h3390h5/2
title: Table S1

description: This dataset is a presence-absence or incidence matrix for the 120 assemblages used in this study.
DOI: 10.5061/dryad.js446q8/1
title: Data files, Brask et al 2018

description: Data from wild guppies (Poecilia reticulata) used in the analysis described in the article entitled "Evolution of non-kin cooperation: social assortment by cooperative phenotype in guppies" by J. B. Brask et al.
DOI: 10.5061/dryad.js7q8b3/10
title: All_BirdTrack_spp_3hrs

description: Zipped folder of multiple BirdTrack files subsetted by species, obstimed using BirdTrack script #1 (see Readme for details).
DOI: 10.5061/dryad.js7q8b3/11
title: All_BirdTrack_spp_modeldata

description: Zipped folder of multiple BirdTrack files containing model data for each species, produced using BirdTrack script #3 (see Readme for details).
DOI: 10.5061/dryad.js7q8b3/12
title: Full_model_dataset_BirdTrack

description: Rdata file of BirdTrack model data for all species, produced using BirdTrack script #4 (see Readme for details).
DOI: 10.5061/dryad.js7q8b3/9
title: BirdTrack_Source

description: Zipped folder of cleaned BirdTrack source csv files (see Readme for details).
DOI: 10.5061/dryad.m574rq8/1
title: DATA from Fox et al (2018) Good parenting may not increase reproductive success under environmental extremes

description: Excel file containing raw data underlying the analyses conducted in Fox et al (2018) Good parenting may not increase reproductive success under environmental extremes
DOI: 10.5061/dryad.r67hd7t/1
title: Data and analysis scripts

description: This .zip file contains folders for reproducing the results, figures, and evaluations for the manuscript. Once unzipped, see the README file for more information.
DOI: 10.5061/dryad.t5sd8c8.2
title: Data from: Phylogenetics of moth-like butterflies (Papilionoidea: Hedylidae) based on a new 13-locus target capture probe set
DOI: 10.5061/dryad.t5sd8c8.2/1.2
title: All supplemental files and figures referenced in publication

description: Folder contains the following supplemental files:                         SuppFile1.Catalog.pdf
Fig.S6.ASR_Diel_parsimony.pdf
Fig.S5.ASR_Diel_Phytools.pdf
Table.S2.Extraction_loci.xlsx
Table.S1.Sample_localities.xlsx
Table.S3.Quantification.xlsx
Fig.S3.ML_supports.pdf
Fig.S4.Astral_probeonly.pdf
Table.S4.PartModels.xlsx
Fig.S1.MLbest_probe+flank.pdf
Fig.S2.MLbest_probeonly.pdf
DOI: 10.5061/dryad.t5sd8c8.2/2.2
title: Concatenated supermatrix of probe and flanking sequences for all loci and specimens

description: Concatenated supermatrix of probe and flanking sequences for all loci and specimens. This matrix was use to build the phylogeny in the paper.
DOI: 10.5061/dryad.t5sd8c8.2/3.2
title: README
DOI: 10.5061/dryad.t5sd8c8.2/4.2
title: BUTTERFLY2.0_kit

description: Specification file for the BUTTERFLY2.0 probe set used to order probes from Agilent Technologies (http://www.agilent.com/)
DOI: 10.5061/dryad.t8s1227/1
title: Appendix e-1. List of Principal Investigators

description: List of principal investigators who participated in the REGAIN study.
DOI: 10.5061/dryad.tc736qr/1
title: When males outlive females Archive Data

description: Lifespan (LS) data for D. magna clones (K), (T) and (B), for males (M) and females (F), recorded at temperature (16) and (20) degrees. The death of an individual was either observed (fin=1), or an individual lived to the end of the experiment (fin=0).
DOI: 10.5061/dryad.tc736qr/2
title: When males outlive females Archive Code

description: Analysis code for the published results
DOI: 10.5061/dryad.tm575v4/1
title: Raw data from flower visitation observations

description: Raw data from flower visitation observations performed in a high-elevation dryland ecosystem on Hawaii Island from March 2015-May 2016.
DOI: 10.5061/dryad.tp24j18/2
title: Data from: Response to short-term deprivation of the human adult visual cortex measured with 7T BOLD

description: large .mat file (readable from matlab) holding all the fMRI and psychophysical data reported in the manuscript. see readme file for details on how variables are formatted and what information is stored in each of them