cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3667493
title: A biomimetic approach to shielding from ionizing radiation: the case of melanized fungi

description: Experimental data and Jupyter notebooks supporting the article "A biomimetic approach to shielding from ionizing radiation: the case of melanized fungi". The repository folder: <strong>experiments</strong> contains the recordings from the shielding experiments. The directory name is the date the data was recorded. The files are ASCII text at the native output of WinSPEC for Inspectors format (see supplier website for more information). <strong>geant_apps</strong> contains the Geant4 applications and output files from the simulations. Any application can be compiled and installed using cmake, similar to the Geant4 examples. <strong>python</strong> contains the Jupyter notebooks to produce the figures and the tables on the aforementioned article. To compile the Geant4 applications, an installation of Geant4 is needed. The results in the repository were obtain using Geant4 10.5.
DOI: 10.15129/e6d04c87-6d09-453a-bb90-c81583c41c4d
title: Data for: "MicroLED waveguide for fluorescence applications"

description: The data was used for the IEEE photonics conference (2019) abstract entitled 'MicroLED waveguide for fluorescence applications'. An Origin2018 file containing the data for Fig. 1a and Fig 2a/b of the abstract. A micro-LED-coupled multimode slab waveguide is reported for fluorescence sensing. The device consists of a 1-dimensional micro-LED array coupled to a sub-mm polymeric slab for evanescent excitation of fluorescent analytes present on the surface. Proof-principle detection of semiconductor nanocrystals down to 0.2 pM/cm2 is demonstrated.
DOI: 10.5281/zenodo.3666097
title: Distinct locomotor precursors in newborn babies

description: Dataset from the manuscript: <strong>Distinct locomotor precursors in newborn babies</strong> Francesca Sylos-Labini, Valentina La Scaleia, Germana Cappellini, Adele Fabiano, Simonetta Picone, Elena S. Keshishian, Dmitry S. Zhvansky, Piermichele Paolillo, Irina A. Solopova, Andrea d’Avella, Yury Ivanenko, Francesco Lacquaniti <strong>Proceedings of the National Academy of Sciences</strong> Apr 2020, 201920984; DOI: 10.1073/pnas.1920984117 http://www.pnas.org/cgi/doi/10.1073/pnas.1920984117
DOI: 10.5281/zenodo.3666098
title: Distinct locomotor precursors in newborn babies

description: Dataset from the manuscript: <strong>Distinct locomotor precursors in newborn babies</strong> Francesca Sylos-Labini, Valentina La Scaleia, Germana Cappellini, Adele Fabiano, Simonetta Picone, Elena S. Keshishian, Dmitry S. Zhvansky, Piermichele Paolillo, Irina A. Solopova, Andrea d’Avella, Yury Ivanenko, Francesco Lacquaniti <strong>Proceedings of the National Academy of Sciences</strong> Apr 2020, 201920984; DOI: 10.1073/pnas.1920984117 http://www.pnas.org/cgi/doi/10.1073/pnas.1920984117
DOI: 10.17632/8ywzzzftgg.1
title: Data for: Improving postharvest storage of fresh artichoke bottoms by an edible coating of Cordia myxa gum
DOI: 10.15468/edhrz6
title: Morphological Redescriptions and Molecular Phylogeny of Three Stentor Species (Ciliophora: Heterotrichea: Stentoridae) from Korea

description: This dataset contains the digitized treatments in Plazi based on the original journal article Taher, Md Abu, Kabir, Ahmed Salahuddin, Shazib, Shahed Uddin Ahmed, Kim, Min Seok, Shin, Mann Kyoon (2020): Morphological Redescriptions and Molecular Phylogeny of Three Stentor Species (Ciliophora: Heterotrichea: Stentoridae) from Korea. Zootaxa 4732 (3): 435-452, DOI: https://doi.org/10.11646/zootaxa.4732.3.6
DOI: 10.21227/2a3d-q240
title: H2Arm - BSP vs PID experiments

description: Many different methods have been proposed in the control and robotics literature for the control of robotics arms. Our main aim is to provide a complete software and hardware platform which allow the statistical replication of our results and the experimentation of other more or less sophisticated control strategies and algorithms.In our work, in order to validate our reproducible research platform and provide a template methodology for its usage, we have thoroughly compared in a reproducible way the performance of simple BSP and PID controls when applied to a light-weight, low accuracy and compliant open source robot arm (H2Arm). BSP significantly outperforms PID on this platform, but not w.r.t. to all metrics.The findings are interesting by themselves. They also show how easily statistically weak results can lead to qualitatively wrong conclusions, if you cherry-pick results.The present dataset contains: i) CAD design to 3D-print the H2Arm; ii) experimental data of comparison BSP vs PID; iii) all the code used to perform the experiments (both BSP and PID).
DOI: 10.5281/zenodo.3667539
title: Sample dataset for the UNICAL use case - ASPIDE

description: This repository contains a sample of the data used for the urban computing use-case of the ASPIDE project. The dataset contains about 56,000 geotagged items published in Flickr from January 2006 to May 2016 in the center of Rome.
DOI: 10.15468/evorqv
title: Notes on the tribe Petrognathini Blanchard, 1845 from China, with description of a new species from Yunnan (Coleoptera, Cerambycidae, Lamiinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bi, Wen-Xuan, Chen, Chang-Chin, Lin, Mei-Ying (2020): Notes on the tribe Petrognathini Blanchard, 1845 from China, with description of a new species from Yunnan (Coleoptera, Cerambycidae, Lamiinae). Zootaxa 4732 (3): 453-460, DOI: https://doi.org/10.11646/zootaxa.4732.3.7
DOI: 10.17632/gbn66cpg4s.1
title: Cephalometric measures correlate with polysomnography parameters in individuals with midface deficiency

description: To determine whether the cephalometric measurements studied could correlate with the polysomnographic parameters in order to provide a positive or negative predictive value for association with OSAS.
DOI: 10.17632/kcwrk7xztp.3
title: experimental data of

description: we carried out a series of experiments about breakdown performance of multi channel multi gap gas switch for linear transformer driver by using several different kind of insulation gases. we publish the results of our test which has been finished in 2019.
DOI: 10.5281/zenodo.3667538
title: Sample dataset for the UNICAL use case - ASPIDE

description: This repository contains a sample of the data used for the urban computing use-case of the ASPIDE project. The dataset contains about 56,000 geotagged items published in Flickr from January 2006 to May 2016 in the center of Rome.
DOI: 10.15468/7lizvt
title: Revision of the elegans-group of Alona s. lato and its status as a subgenus of Coronatella Dybowski & Grochowski, 1894 (Cladocera: Anomopoda Chydoridae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Sinev, Artem Y. (2020): Revision of the elegans-group of Alona s. lato and its status as a subgenus of Coronatella Dybowski & Grochowski, 1894 (Cladocera: Anomopoda Chydoridae). Zootaxa 4732 (4): 501-526, DOI: https://doi.org/10.11646/zootaxa.4732.4.1
DOI: 10.15468/hd4cex
title: Species of the genus Allothrips (Thysanoptera, Idolothripinae) from Southeast Asia, with one new species from Yunnan, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mound, Laurence, Li, Yajin, Zhang, Hongrui (2020): Species of the genus Allothrips (Thysanoptera, Idolothripinae) from Southeast Asia, with one new species from Yunnan, China. Zootaxa 4732 (4): 593-595, DOI: https://doi.org/10.11646/zootaxa.4732.4.10
DOI: 10.17632/ddjtwhhrcj.1
title: Formação docente em tecnologias sociais na Rede Federal de Ensino

description: Documentos de apoio a construção e aplicação do produto educacional da dissertação: Formação docente em tecnologias sociais na Rede Federal de Ensino
DOI: 10.17632/ddjtwhhrcj.2
title: Formação docente em tecnologias sociais na Rede Federal de Ensino

description: Documentos de apoio a construção e aplicação do produto educacional da dissertação: Formação docente em tecnologias sociais na Rede Federal de Ensino
DOI: 10.17632/ddjtwhhrcj.3
title: Formação docente em tecnologias sociais na Rede Federal de Ensino

description: Documentos de apoio a construção e aplicação do produto educacional da dissertação: Formação docente em tecnologias sociais na Rede Federal de Ensino
DOI: 10.17632/kcwrk7xztp.1
title: experimental data of

description: we carried out a series of experiments about breakdown performance of multi channel multi gap gas switch for linear transformer driver by using several different kind of insulation gases. we publish the results of our test which has been finished in 2019.
DOI: 10.17632/kcwrk7xztp.2
title: experimental data of

description: we carried out a series of experiments about breakdown performance of multi channel multi gap gas switch for linear transformer driver by using several different kind of insulation gases. we publish the results of our test which has been finished in 2019.
DOI: 10.15468/pkniat
title: Rediscovery of Southern Barbed-wire Bush-cricket, Onconotus servillei Fischer von Waldheim (Orthoptera: Tettigoniidae: Tettigoniinae: Onconotini) in Serbia, with notes on species’ calling song at the westernmost border of its distribution area

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ivković, Slobodan, Horvat, Laslo, Iorgu, Ștefan (2020): Rediscovery of Southern Barbed-wire Bush-cricket, Onconotus servillei Fischer von Waldheim (Orthoptera: Tettigoniidae: Tettigoniinae: Onconotini) in Serbia, with notes on species’ calling song at the westernmost border of its distribution area. Zootaxa 4732 (4): 596-600, DOI: https://doi.org/10.11646/zootaxa.4732.4.11
DOI: 10.17632/ftwbtw9nmx.1
title: Montgat library consumption and temperatures

description: This data set contains data from the Montgat library (Spain) in the period October 2017 to October 2018. In particular it contains the hourly total energy consumption, the hourly consumption from the HVAC system, the hourly external temperature (From 24 October 2017), the 5-minutes internal temperature and the set-point temperature.
DOI: 10.17632/ftwbtw9nmx.2
title: Montgat library consumption and temperatures

description: This data set contains data from the Montgat library (Spain) in the period October 2017 to October 2018. In particular it contains the hourly total energy consumption, the hourly consumption from the HVAC system, the hourly external temperature (From 24 October 2017), the 5-minutes internal temperature and the set-point temperature.
DOI: 10.15468/udbf8f
title: Taxonomy and bioacoustics of Meconematinae (Orthoptera: Tettigoniidae) from Laguna (Philippines: Luzon)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Tan, Ming Kai, Jin, Xing-Bao, Baroga-Barbecho, Jessica B., Yap, Sheryl A. (2020): Taxonomy and bioacoustics of Meconematinae (Orthoptera: Tettigoniidae) from Laguna (Philippines: Luzon). Zootaxa 4732 (4): 527-544, DOI: https://doi.org/10.11646/zootaxa.4732.4.2
DOI: 10.7910/dvn/uyaubo/fjpmsl
title: Figure_1f.tab

description: :unav
DOI: 10.7910/dvn/uyaubo/ztbwmf
title: DR+CSA_2.jdf

description: Activity of DR_CSAD with CSA substrates after 5 minutes.
DOI: 10.15468/iw51fw
title: A new mud shrimp of the genus Pugnatrypaea from outer continental shelf waters of the northern Gulf of Mexico, commonly associated with hydrocarbon seeps (Crustacea: Decapoda: Callianassidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Felder, Darryl L., Robles, Rafael (2020): A new mud shrimp of the genus Pugnatrypaea from outer continental shelf waters of the northern Gulf of Mexico, commonly associated with hydrocarbon seeps (Crustacea: Decapoda: Callianassidae). Zootaxa 4732 (4): 545-555, DOI: https://doi.org/10.11646/zootaxa.4732.4.3
DOI: 10.7910/dvn/uyaubo/fosbmy
title: DR+CSA_3.jdf

description: Activity of DR_CSAD with CSA substrates after 5 minutes.
DOI: 10.7910/dvn/uyaubo/g9yg4u
title: Figure_1j.CSV

description: Data and fitted curves for CAD activity with CA and CSA substrates in tabular form
DOI: 10.7910/dvn/uyaubo/tvbxqx
title: Figure_1i.tab

description: :unav
DOI: 10.7910/dvn/uyaubo/wusf3o
title: DR+CA_1.jdf

description: Activity of DR_CSAD with CSA substrates after 5 minutes.
DOI: 10.15468/rvqybm
title: A new species of Flavoperla Chu, 1929 (Plecoptera: Perlidae) from Guangxi Zhuang Autonomous Region of southern China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mo, Raorao, Wang, Guoquan, Li, Weihai (2020): A new species of Flavoperla Chu, 1929 (Plecoptera: Perlidae) from Guangxi Zhuang Autonomous Region of southern China. Zootaxa 4732 (4): 565-572, DOI: https://doi.org/10.11646/zootaxa.4732.4.5
DOI: 10.15468/4iplph
title: Systematic notes on Sinacroneuria Yang & Yang, 1995 (Plecoptera: Perlidae), with descriptions of two new species from China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Sivec, Ignac, Stark, Bill P. (2020): Systematic notes on Sinacroneuria Yang & Yang, 1995 (Plecoptera: Perlidae), with descriptions of two new species from China. Zootaxa 4732 (4): 580-584, DOI: https://doi.org/10.11646/zootaxa.4732.4.7
DOI: 10.15468/apiz7m
title: A new species of the genus Goera Stephens (Trichoptera, Goeridae) found in madicolous habitats in Amami-Oshima, southwestern Japan

description: This dataset contains the digitized treatments in Plazi based on the original journal article Nozaki, Takao, Shimura, Noriyoshi (2020): A new species of the genus Goera Stephens (Trichoptera, Goeridae) found in madicolous habitats in Amami-Oshima, southwestern Japan. Zootaxa 4732 (4): 573-579, DOI: https://doi.org/10.11646/zootaxa.4732.4.6
DOI: 10.17632/vj5469pmv6.2
title: Data for: Sleeve Gastrectomy Ameliorates Endothelial Function and Prevents Lung Cancer by Normalizing Endothelin-1 Axis and Reduces DNA damage in Obese and Diabetic Rats
DOI: 10.17632/rm56h9msym.3
title: Localized inhibition of protein phosphatase 1 by NUAK1 promotes spliceosome activity and reveals a MYC-sensitive feedback control of transcription

description: Deregulated expression of MYC induces a dependence on the NUAK1 kinase, but the molecular mechanisms underlying this dependence have not been fully clarified. Here we show that NUAK1 is a predominantly nuclear protein that associates with a network of nuclear protein phosphatase 1 (PP1) interactors and that PNUTS, a nuclear regulatory subunit of PP1, is phosphorylated by NUAK1. Both NUAK1 and PNUTS associate with the splicing machinery. Inhibition of NUAK1 abolishes chromatin association of PNUTS, reduces spliceosome activity and suppresses nascent RNA synthesis. Activation of MYC does not bypass the requirement for NUAK1 for spliceosome activity, but significantly attenuates transcription inhibition. Consequently, NUAK1 inhibition in MYC-transformed cells induces global accumulation of RNAPII both at the pause-site and at the first exon/intron boundary, but does not increase mRNA synthesis. We suggest that NUAK1 inhibition in the presence of deregulated MYC traps non-productive RNAPII due to the absence of correctly assembled spliceosomes.
DOI: 10.17632/vj5469pmv6.3
title: Data for: Sleeve Gastrectomy Ameliorates Endothelial Function and Prevents Lung Cancer by Normalizing Endothelin-1 Axis and Reduces DNA damage in Obese and Diabetic Rats
DOI: 10.15468/3qk8d9
title: First record of the dobsonfly genus Protohermes van der Weele, 1907 from Pakistan (Megaloptera: Corydalidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Hassan, Muhammad Asghar, Hayashi, Fumio, Liu, Xingyue (2020): First record of the dobsonfly genus Protohermes van der Weele, 1907 from Pakistan (Megaloptera: Corydalidae). Zootaxa 4732 (3): 422-434, DOI: https://doi.org/10.11646/zootaxa.4732.3.5
DOI: 10.17632/hk3837k7kv.1
title: Montagu's Harrier GPS telemetry in Eastern Poland

description: Krupiński et al. 2020. Ranging behaviour and habitat use in Montagu’s Harrier in extensive farmland of Eastern Poland. Dataset
DOI: 10.15468/1k62km
title: The genus Obrium Dejean, 1821 (Coleoptera: Cerambycidae: Cerambycinae Obriini) in Argentina: new species, distributions and host plant

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zubarán, Gastón E. (2020): The genus Obrium Dejean, 1821 (Coleoptera: Cerambycidae: Cerambycinae Obriini) in Argentina: new species, distributions and host plant. Zootaxa 4732 (4): 556-564, DOI: https://doi.org/10.11646/zootaxa.4732.4.4
DOI: 10.17632/st2grwnhmv.1
title: High-resolution data on mesoscale dynamics of the Caspian Sea upper layer, obtained in a numerical reconstruction

description: The dataset contains information on the currents in the upper 15-meter layer of the Caspian Sea in 2003-2005. The velocity fields were reconstructed in an eddy-resolving ocean general circulation model SZ-COMPAS using a realistic forcing. The data arrays have a very high resolution: ~2 km in space and 4 hours in time. This is sufficient to resolve most of the mesoscale features of sea dynamics as well as a wide range of their temporal spectrum, including inertial oscillations, synoptic and seasonal variability. The NetCDF files are: 3 files with instantaneous currents and 3 files with monthly mean currents (suffix “mm” in the file names). Each file corresponds to one of the three horizons (depths): 1 m, 7 m, and 15 m. In the horizontal plane the data are defined on a uniform geographical grid (46.7625–54.2125°E, 36.5092–47.2892°N), dimensions of all of the arrays are 299 by 589. The period covered by the instantaneous data is 2003, time step is 4 hours; the first record corresponds to 2003-01-01 04:00:00 GMT. The period covered by the monthly mean data is 2003-2005 with one vector field for every month, defined on the last day of the month. All data dimension is cm/s. It should be noted that the model describes the upper 30-meter layer of the sea in sigma-coordinate, so the data values are actually defined on the 1st, 4th, and 8th sigma-horizons, rather than 1 m, 7 m, and 15 m depths. This means that, in the sea cells with bottom depth less than 30 m, the actual depth of the data nodes is ~3%, ~23% and 50% of real water column height, while in the rest of cells (with bottom depth greater than 30 m), the data nodes are located at ~1 m, ~7 m, and ~15 m of depth (± few centimeters depending on the local sea level).
DOI: 10.5281/zenodo.3667385
title: Distinct roles for H4 and H2A.Z acetylation in RNA transcription in African trypanosomes

description: This repository contains the run scripts for this publication. <strong>Complete data download</strong><br> http://resources-molpara.vetmed.lmu.de/Kraus_et_al_2019_sequencing_analysis.tar.gz <strong>Contents of the tar.gz archive:</strong><br> upload_sequencing/<br> ├── bin/<br> │ ├── scripts necessary to run the pipeline<br> ├── input/<br> │ ├── input files<br> ├── output/<br> │ ├── output files for ChIP and RNA-seq<br> └── output2/<br> └── output files for ATAC-seq <strong>Abstract</strong><br> Despite histone H2A variants and acetylation of histones occurring in almost every eukaryotic organism, it has been difficult to establish direct functional links between canonical histone or H2A variant acetylation, deposition of H2A variants and transcription. To disentangle these complex interdependent processes, we devised a highly sensitive strategy for quantifying histone acetylation levels at specific genomic loci. Taking advantage of the unusual genome organization in <em>Trypanosoma brucei</em>, we identify 58 histone modifications enriched at transcription start sites (TSSs). Furthermore, we find TSS-associated H4 and H2A.Z acetylation to be mediated by two different histone acetyltransferases, HAT2 and HAT1, respectively. Whereas depletion of HAT2 decreases H2A.Z deposition and shifts the site of transcription initiation, depletion of HAT1 does not affect H2A.Z deposition but reduces total mRNA levels by 50%. Thus, specifically reducing H4 or H2A.Z acetylation levels enabled us to reveal distinct roles for these modifications in H2A.Z deposition and RNA transcription.
description: We thank all current and former members of the Siegel and Janzen laboratories for valuable discussions and for assistance with experiments. We thank Joana Correia-Faria for sharing protocols for the isolation of the chromatin-associated protein fractions. We thank Felix Müller-Planitz, Stan Gorski, Kirsty McWilliam and Raúl Cosentino for critically reading the manuscript. We thank Konrad U. Förstner and Raúl O. Cosentino for suggestions regarding data analysis and the Core Unit Systems Medicine of the University of Würzburg for the high-throughput sequencing. We acknowledge the support and resources from the Bioinformatics Core Facility at the Biomedical Center Munich. We thank Beate Vogt and Christiane Winkler for their help in sample preparation for FIPQuant. This work was funded by the Young Investigator Program of the Research Center for Infectious Diseases (ZINF) at the University of Würzburg, Germany, a grant from the German Research Foundation (SI 1610/2-1) and an ERC Starting Grant (3D_Tryps 715466).
DOI: 10.23729/6e255530-dd8a-41c6-b8b2-2925695a3899
title: SMEAR I Värriö tree gas exchange

description: This dataset contains continuous measurements of tree gas exchange with chambers at SMEAR I research station in Värriö, Salla, Finland during years 1999–2018.
DOI: 10.5281/zenodo.3667465
title: Data for "A systematic evaluation of interneuron morphology representations for cell type discrimination"

description: data_v1.1 contains all the data to reproduce the figures of the publication <em>A systematic evaluation of interneuron morphology representations for cell type discrimination (</em>https://doi.org/10.1101/591370<em>).</em> statistic_descriptions.csv : links each feature's statistic_id with a short description classification: This folder holds the multi-class and the pairwise classification performances of all feature representations (relevant for figure 4 and figure 5). It also holds the pickled multi-class models trained on morphometric statistics which coefficients are visualized in figure S5. embedding_data: This folder holds all the data used for the t-SNE visualizations of figure 8 and S4. features: This folder holds all computed feature representations of each data set and each modality (full, axon, dendrite). Features are indexed by a statistic id. Some example features are shown in figure 2. Careful, this folder is large (~6GB)! reconstructions: This folder contains all the neural reconstructions used for figure 1. final morphologies: contains all pre-processed reconstructions used in this study.
description: {"references": ["Laturnus et al, 2019: https://www.biorxiv.org/content/10.1101/591370v2"]}