cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gzqjib
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Festuca pseudodalmatica Krajina"
 ]
}

 The dataset includes 116 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012102-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h64fck
title: Occurrence Download

description: A dataset containing 3668 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Protea decurrens E.Phillips",
 "TaxonKey is Adansonia digitata L."
 ]
}

 The dataset includes 3668 records from 151 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015854-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qb54w9
title: Occurrence Download

description: A dataset containing 1705 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abatia Ruiz & Pav."
 ]
}

 The dataset includes 1705 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003110-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xvz0fo
title: Occurrence Download

description: A dataset containing 28002104 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Accipitriformes"
 ]
}

 The dataset includes 28002104 records from 1562 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002012-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25904/1912/3919
title: Asthma, allergic rhinitis and BVOCs from plants [Dataset]

description: Project data from Asthma Foundation of Qld grant 2000-2001; Asthma and allergic rhinitis symptoms and various BVOCS, pollution, pollen, fungi, and meteorological variables.
DOI: 10.15468/dl.2j6dsh
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is one of (RIO GRaNdE dO SUL, Rio Grande Do Sul)",
 "TaxonKey is Hydropsalis anomala (Gould, 1838)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000609-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.krx2ds
title: Occurrence Download

description: A dataset containing 36835 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (EOD – eBird Observation Dataset, iNaturalist Research-grade Observations)",
 "Geometry POLYGON((-68.04044 46.43233,-67.62413 46.43233,-67.62413 46.6956,-68.04044 46.6956,-68.04044 46.43233))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2007-2022"
 ]
}

 The dataset includes 36835 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000608-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9rddrh
title: Occurrence Download

description: A dataset containing 849 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "TaxonKey is Vulpes vulpes crucigera (Bechstein, 1789)"
 ]
}

 The dataset includes 849 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000610-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.za6afk
title: Occurrence Download

description: A dataset containing 1091 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lebeckia Thunb.)",
 "OccurrenceStatus is Present",
 "BasisOfRecord is Specimen",
 "Country is South Africa"
 ]
}

 The dataset includes 1091 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000611-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5zz8wu
title: Occurrence Download

description: A dataset containing 158644 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ailanthus altissima (Mill.) Swingle",
 "Year 1970-2025"
 ]
}

 The dataset includes 158644 records from 1223 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000603-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7z6tvr
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is one of (RIO GRaNdE dO SUL, Rio Grande Do Sul)",
 "TaxonKey is Hemitriccus orbitatus (Wied-Neuwied, 1831)"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000612-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3hewe9
title: Occurrence Download

description: A dataset containing 56094 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (EOD – eBird Observation Dataset, iNaturalist Research-grade Observations)",
 "Geometry POLYGON((-70.08478 44.85843,-69.33556 44.85843,-69.33556 45.29331,-70.08478 45.29331,-70.08478 44.85843))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2007-2022"
 ]
}

 The dataset includes 56094 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000613-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.46fqnq
title: Occurrence Download

description: A dataset containing 455 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epinephelus akaara (Temminck & Schlegel, 1842)"
 ]
}

 The dataset includes 455 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000614-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/74f675276213727571c2b3f6c197fa17
title: Free water metabolism (FWM) derived net ecosystem production (NEP) from lagoon sites along the Beaufort Sea Coast, Alaska, 2019-ongoing

description: Continuous measurements of dissolved oxygen (DO) in order to calculate daily values of free water metabolism (FWM) derived net ecosystem production (NEP) at several core Beaufort Lagoon Ecosystems LTER (BLE-LTER) stations. These deployments were done in addition to year-round core program BLE-LTER mooring deployments during the under ice sampling at surface and bottom depths (April/May), and during open water season in bottom depths (July/August). Gross primary production (GPP), ecosystem respiration (ER), and the sum of the two: net ecosystem production (NEP) are reported in mol C m-2 day-1.
DOI: 10.6075/j0571c7g
title: Data from: Prediction of Threonine-Tyrosine Kinase Receptor-Ligand Unbinding Kinetics with Multiscale Milestoning and Metadynamics

description: Calculations were performed using SEEKR 2.1.6-beta, AmberTools 18, OpenMM 8.1, Browndye 2, Numpy 1.26.4, Scipy 1.13.0, MatPlotLib 3.8.4
description: This collection contains a set of full Simulation Enable Estimation of Kinetic Rates (SEEKR) simulations and calculation results for eight inhibitors of the threonine tyrosine kinase (TTK) target. For each of these systems, starting structures were generated with metadynamics and steered molecular dynamics for generating starting structures in order to compare the two methods. Full simulation files as well as milestoning analysis results are included, as well as convergence outputs and plots.
DOI: 10.15468/dl.8hnxgn
title: Occurrence Download

description: A dataset containing 8610 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Colletes inaequalis Say, 1837"
 ]
}

 The dataset includes 8610 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000615-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.np8d7y
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Geometry POLYGON((-91.39561 17.14865,-90.04666 15.67406,-85.25405 16.77404,-85.25405 22.00042,-92.63337 22.00042,-91.51465 18.65722,-91.39561 17.14865))",
 "HasGeospatialIssue is false",
 "TaxonKey is Casearia aculeata Jacq."
 ]
}

 The dataset includes 61 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000616-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14831388
title: Data regarding the manuscript "Out-Of-Plane Metal Coordination for a True Solvent-Free Building with Molecular Bricks: Dodging the Surface Ligand Effect for On-Surface Vacuum Self-Assembly"
DOI: 10.5281/zenodo.14831389
title: Data regarding the manuscript "Out-Of-Plane Metal Coordination for a True Solvent-Free Building with Molecular Bricks: Dodging the Surface Ligand Effect for On-Surface Vacuum Self-Assembly"
DOI: 10.15468/dl.5gscgz
title: Occurrence Download

description: A dataset containing 14818 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Emberiza spodocephala Pallas, 1776",
 "Year 2010-2020"
 ]
}

 The dataset includes 14818 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000617-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7924/r4sq94q1d
title: Data from: Release and reuptake sites for norepinephrine are differently distributed across layers of the primary visual cortex in macaque monkeys

description: Quantitative data representing counts, angle of orientation measurements, length estimates, and brain area volume estimates. Counts, angles, and lengths are for axons from the locus coeruleus visualized using antibodies directed against dopamine beta-hydroxylase or the norepinephrine transporter, with 3,3'-diaminobenzidine HCl as a chromogren. Data was collected from tissue sections containing the primary and secondary visual cortices of adult macaque monkeys. Stereological data were collected using the StereoInvestigator software suite from MBF Biosciences (versions 2019 and 2020).
DOI: 10.5517/ccdc.csd.cc2mddr6
title: CCDC 2424998: Experimental Crystal Structure Determination

description: Related Article: Peiyao Pan|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.tnteyx
title: Occurrence Download

description: A dataset containing 6878 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Hemixos castanonotus Swinhoe, 1870",
 "Year 2010-2020"
 ]
}

 The dataset includes 6878 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000618-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14524523
title: Reduced order modeling with shallow recurrent decoder networks

description: Overview

SHallow REcurrent Decoder-based Reduced Order Model (SHRED-ROM) is an ultra-hyperreduced order modeling framework aiming at reconstructing high-dimensional data from limited sensor measurements in multiple scenarios. Thanks to the composition of a Long-Short Term Memory network (LSTM) and a Shallow Decoder Network (SDN), SHRED-ROM is capable of



Reconstructing high-dimensional data (such as synthetic or video data) from sparse sensor measurements in new scenarios unseen during training, regardless of sensor placement,

Dealing with both physical, geometrical and time-dependent parametric dependencies, while being agnostic to the paraemter values,

Estimating unknown parameters,

Coping with both fixed or mobile sensors.


Importantly, computational efficiency and memory usage are enhanced by reducing the dimensionality of full-order snapshots, allowing for compressive training of the networks, with minimal hyperparameter tuning and laptop-level computing.

Contents

GoPro_video*.gif  -->  videos of flows around an oscillating cylinder at different inflow conditions

KuramotoSivashinsky_data.npz  -->  time-dependent state, whose dynamics is described by the 1D Kuramoto-Sivashinsky equation, for different viscosity and initial condition frequencies. The corresponding parameters are also provided

Pinball_data.npz  -->  time-dependent densities, whose dynamics is described by the advection-diffusion partial differential equation, for different velocities of the rotating cylinders. The corresponding parameters and the transport term, which is computed through steady Navier-Stokes equations, are also provided

FlowAroundObstacle_data.npz  -->  time-dependent velocities and pressures, whose dynamics is described in terms of unsteady Navier-Stokes equations, for different obstacle geometries, inflow intensities and constant angles of attack. The corresponding parameters are also provided

FlowAroundObstacle_UnsteadyParam_data.npz  -->  time-dependent velocities and pressures, whose dynamics is described in terms of unsteady Navier-Stokes equations, for different obstacle geometries, inflow intensities and time-dependent angles of attack. The corresponding parameters are also provided

*.zip  -->  mesh, sensor indices and trained neural networks for code reproducibility
DOI: 10.5281/zenodo.14524524
title: Reduced order modeling with shallow recurrent decoder networks

description: Overview

SHallow REcurrent Decoder-based Reduced Order Model (SHRED-ROM) is an ultra-hyperreduced order modeling framework aiming at reconstructing high-dimensional data from limited sensor measurements in multiple scenarios. Thanks to the composition of a Long-Short Term Memory network (LSTM) and a Shallow Decoder Network (SDN), SHRED-ROM is capable of



Reconstructing high-dimensional data (such as synthetic or video data) from sparse sensor measurements in new scenarios unseen during training, regardless of sensor placement,

Dealing with both physical, geometrical and time-dependent parametric dependencies, while being agnostic to the paraemter values,

Estimating unknown parameters,

Coping with both fixed or mobile sensors.


Importantly, computational efficiency and memory usage are enhanced by reducing the dimensionality of full-order snapshots, allowing for compressive training of the networks, with minimal hyperparameter tuning and laptop-level computing.

Contents

GoPro_video*.gif  -->  videos of flows around an oscillating cylinder at different inflow conditions

KuramotoSivashinsky_data.npz  -->  time-dependent state, whose dynamics is described by the 1D Kuramoto-Sivashinsky equation, for different viscosity and initial condition frequencies. The corresponding parameters are also provided

Pinball_data.npz  -->  time-dependent densities, whose dynamics is described by the advection-diffusion partial differential equation, for different velocities of the rotating cylinders. The corresponding parameters and the transport term, which is computed through steady Navier-Stokes equations, are also provided

FlowAroundObstacle_data.npz  -->  time-dependent velocities and pressures, whose dynamics is described in terms of unsteady Navier-Stokes equations, for different obstacle geometries, inflow intensities and constant angles of attack. The corresponding parameters are also provided

FlowAroundObstacle_UnsteadyParam_data.npz  -->  time-dependent velocities and pressures, whose dynamics is described in terms of unsteady Navier-Stokes equations, for different obstacle geometries, inflow intensities and time-dependent angles of attack. The corresponding parameters are also provided

*.zip  -->  mesh, sensor indices and trained neural networks for code reproducibility
DOI: 10.6084/m9.figshare.28355789
title: MorPhiC Hackathon San-Fransisco 2025 TF-target data

description: This repository contains the data related to the MorPhiC Hackathon San-Fransisco 2025 task 1:<b>TF - target inference (from single-cell data).</b>The h5ad file is a file that can be loaded with Scanpy and contains <i>3</i>5,799 wild-type (WT) cells and 80,544 TF knockout (KO) cells spanning nine cell types involved in the differentiation of endocrine cell types from precursors within the pancreas and 27 TFs.The cell metadatas are available directly within the anndata (anndata.obs) and in the meta.all.tsv file included in the dataset.The index_H1.main_type.tsv indicates the WT cells used for the analysis<b>TF-target Gene Regulation Networks (GRNs)</b>The GRN files contain the inferred GRNs for 4 approaches and each of the 9 endocrine cell types: GRNboost2, SCENIC, CellOracle, and Inferelator.In addition, GRNs inferred only from biomedical corpuses (LLM) or databases are available in the grn.llm file.<b>TF-&gt;target small scale interaction formatted for LLM training</b>llm_target_question.tar.gz contains 3 json files (training, test, validation) used to train a LLM model.<br>
DOI: 10.6084/m9.figshare.28355789.v2
title: MorPhiC Hackathon San-Fransisco 2025 TF-target data

description: This repository contains the data related to the MorPhiC Hackathon San-Fransisco 2025 task 1:<b>TF - target inference (from single-cell data).</b>The h5ad file is a file that can be loaded with Scanpy and contains <i>3</i>5,799 wild-type (WT) cells and 80,544 TF knockout (KO) cells spanning nine cell types involved in the differentiation of endocrine cell types from precursors within the pancreas and 27 TFs.The cell metadatas are available directly within the anndata (anndata.obs) and in the meta.all.tsv file included in the dataset.The index_H1.main_type.tsv indicates the WT cells used for the analysis<b>TF-target Gene Regulation Networks (GRNs)</b>The GRN files contain the inferred GRNs for 4 approaches and each of the 9 endocrine cell types: GRNboost2, SCENIC, CellOracle, and Inferelator.In addition, GRNs inferred only from biomedical corpuses (LLM) or databases are available in the grn.llm file.<b>TF-&gt;target small scale interaction formatted for LLM training</b>llm_target_question.tar.gz contains 3 json files (training, test, validation) used to train a LLM model.<br>
DOI: 10.6084/m9.figshare.28355789.v1
title: MorPhiC Hackathon San-Fransisco 2025 TF-target data

description: This repository contains the data related to the MorPhiC Hackathon San-Fransisco 2025 task 1:<b>TF - target inference (from single-cell data).</b>The h5ad file is a file that can be loaded with Scanpy and contains <i>3</i>5,799 wild-type (WT) cells and 80,544 TF knockout (KO) cells spanning nine cell types involved in the differentiation of endocrine cell types from precursors within the pancreas and 27 TFs.The cell metadatas are available directly within the anndata (anndata.obs) and in the meta.all.tsv file included in the dataset.The index_H1.main_type.tsv indicates the WT cells used for the analysis<b>TF-target Gene Regulation Networks (GRNs)</b>The GRN files contain the inferred GRNs for 4 approaches and each of the 9 endocrine cell types: GRNboost2, SCENIC, CellOracle, and Inferelator.In addition, GRNs inferred only from biomedical corpuses (LLM) or databases are available in the grn.llm file.<b>TF-&gt;target small scale interaction formatted for LLM training</b>llm_target_question.tar.gz contains 3 json files (training, test, validation) used to train a LLM model.<br>
DOI: 10.15468/dl.abt64d
title: Occurrence Download

description: A dataset containing 10842 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (EOD – eBird Observation Dataset, iNaturalist Research-grade Observations)",
 "Geometry POLYGON((-70.76196 45.21987,-70.34884 45.21987,-70.34884 45.49329,-70.76196 45.49329,-70.76196 45.21987))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2007-2022"
 ]
}

 The dataset includes 10842 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000619-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28438265
title: Dynamic XS Citywide Gent Data

description: Data supporting the construction of two citywide gentrification measures: the Dynamic Measure of Citywide Gentrification and the Cross-Sectional Measure of Citywide Gentrification.
DOI: 10.6084/m9.figshare.28438265.v1
title: Dynamic XS Citywide Gent Data

description: Data supporting the construction of two citywide gentrification measures: the Dynamic Measure of Citywide Gentrification and the Cross-Sectional Measure of Citywide Gentrification.
DOI: 10.15468/dl.nm3jnp
title: Occurrence Download

description: A dataset containing 3275 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Habropoda laboriosa (Fabricius, 1804)"
 ]
}

 The dataset includes 3275 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000620-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5q84ar
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is RIO GRaNdE dO SUL",
 "TaxonKey is Gubernatrix cristata (Vieillot, 1817)"
 ]
}

 The dataset includes 60 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000621-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.