cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.kx535v
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calidris alpina arcticola (Todd, 1953)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103168-220831081235567/datasets/export for details.
DOI: 10.15468/dl.ky9h89
title: Occurrence Download

description: A dataset containing 3469 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ulmus ×hollandica Mill."
 ]
}

 The dataset includes 3469 records from 144 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010883-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2j9wvf
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vepris dicarpella H.Perrier"
 ]
}

 The dataset includes 72 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134526-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4zkjnh
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Cerastium rivulare Cambess."
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 72 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012050-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bvhs4f
title: Occurrence Download

description: A dataset containing 106 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year is 1900",
 "TaxonKey is Vulpes vulpes (Linnaeus, 1758)"
 ]
}

 The dataset includes 106 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134527-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fxxfjr
title: Occurrence Download

description: A dataset containing 1012 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Leopardus wiedii (Schinz, 1821)"
 ]
}

 The dataset includes 1012 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031899-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.urcz5h
title: Occurrence Download

description: A dataset containing 2285 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Sweden",
 "TaxonKey is Neogobius melanostomus (Pallas, 1814)"
 ]
}

 The dataset includes 2285 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028102-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ptjgfx
title: Occurrence Download

description: A dataset listing the 16920806 species recorded in GBIF matching the query:
{
 "Country" : [
 "is Mexico"
 ]
}

 The dataset's 16920806 records were derived from 2422 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012050-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13853756
title: Supplementary data to the African Yam Bean Whole Genome Sequencing Project ENA Project_ID:PRJEB57813

description: The first chromosome-scale assembly of the African yam bean, Sphenostylis stenocarpa (Hochst. ex. A. Rich.) Harms, an original African tuberous legume producing both pods and protein-rich tubers.

ENA Project_ID: PRJEB57813

Genome Assembly Accession: GCA_963425845
DOI: 10.3886/e158022v1-157110
title: U.S. Census Bureau TIGER/Line Files, 1990, 2000-2002, 2004-2009

description: The U.S. Census Bureau TIGER/Line® files in this data collection were originally distributed by the Inter-university Consortium for Political and Social Research (ICPSR) through its TIGER/Line file web site, which was decommissioned in 2018 (archived version: https://web.archive.org/web/20090924181858/http://www.icpsr.umich.edu/TIGER/index.html). There, users could download various versions of the U.S. Census Bureau's TIGER (Topologically Integrated Geographic Encoding and Referencing) database. The TIGER/Line files do not include demographic data, but they do contain geographic information that can be linked to the Census Bureau’s demographic data. <br><br>Due to file number limitations in openICPSR, the original data collections have been bundled into single zip packages. A single TIGER_directory.txt file listing the original files and the original directory structure is included with the root directory. Documentation files are also included as standalone subdirectories in each collection so users do not need to download entire zip bundles to view documentation. <br><br>The TIGER/Line data are stored in compressed format in subdirectories by state name. There is one TIGER/Line file (in a compressed format) for each county or county equivalent. The file names consist of TGR + the 2-digit state FIPS (Federal Information Processing Standards) code + the 3-digit county FIPS code (i.e. TGR01031.ZIP for Coffee County, Alabama). Each state folder contains individual county files.<br>The individual county files include one file for each record type included for that county with the following name convention: tgr01031.rt1. The convention follows the order described above with each file having a suffix which includes 'rt' (record type) followed by its designation (in this case record type 1). Each county file also contains its own metadata record.<br>If present, documentation files for the TIGER/Line data are stored in a directory named '0docs' which is located in the 'Parent Directory'. This directory appears at the top of the index of state subdirectories for each edition of the TIGER/Line files. The documentation includes a complete list of FIPS state and county codes.
description: Smallest Geographic Unit: county or statistical equivalent entity
DOI: 10.21227/j56t-ww52
title: NANCY SNS JU Project - VR Video Streaming and iPerf3 Dataset

description: This dataset was developed in the context of the NANCY project and it is the output of the experiments involving streaming a virtual reality (VR) video in a 5G coverage expansion scenario. Additionally, iPerf3 experiments in both TCP and UDP modes were carried out. The coverage expansion scenario involves a main operator and a micro-operator which extends the main operator’s coverage and can also provide additional services.The dataset includes network traffic, which was captured and stored in a .pcap files, as well as various performance metrics that were collected by an xApp running in the near-real-time Radio Access Network Intelligent Controller.
DOI: 10.15468/dl.9x4esz
title: Occurrence Download

description: A dataset containing 8021 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (Swiss National Databank of Vascular Plants, Floristic records from survey studies of the Bayerisches Landesamt für Umwelt, Occurrence Data of Vascular Plants collected or compiled for the Flora of Bavaria, INPN - Données flore des CBN agrégées par la FCBN, Biodiversitätsdatenbank Salzburg, Centralisation des observations floristiques - Observations floristiques floutées issues de la base de données flore du Conservatoire botanique national alpin)",
 "TaxonKey is Ranunculus alpestris L."
 ]
}

 The dataset includes 8021 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035948-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13863491
title: Great Lakes WRF-FVCOM model ensemble outputs: Summer 2018 daily LST and T2m

description: Postprocessed model data for the paper: "Coupled Lake-Atmosphere-Land Physics Uncertainties in a Great Lakes Regional Climate Model"

Perturbed Physics Ensemble outputs from a coupled lake-atmosphere-land Great Lakes regional model: - Time period: May, June, July of 2018 - Computational domain: Great Lakes region as contained within wrf_grid.nc (atmosphere-land) and fvcom_grid.nc (lake).- Quantities of interest: lake surface temperature and 2-m near-surface air temperature- Training set: "wfv_global_daily_temperature_training_set.pkl" [18 members]. Associated with "perturbation_matrix_9variables_korobov18.nc" input model configuration matrix.- Test set: "wfv_global_daily_temperature_test_set.pkl" [9 members]. Associated with "perturbation_matrix_9variables_latin_hypercube9.nc" input model configuration matrix.
DOI: 10.15468/dl.b5nr6w
title: Occurrence Download

description: A dataset containing 7685 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-70.76149 19.39926, -70.61948 19.39926, -70.61948 19.51506, -70.76149 19.51506, -70.76149 19.39926))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 7685 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035949-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25513153
title: Effects of temperature on fish aggression and the combined impact of temperature and turbidity on thermal tolerance

description: We compare effects of diel-fluctuating versus stable water temperature regimes on the behaviour and upper thermal tolerance (measured as Critical Thermal Maximum, CTmax) of the Bluntnose Minnow, Pimephales notatus. Fish were acclimated to either a static 18ºC, static 24ºC or a diel-fluctuating treatment of 18-24ºC for a total of 10 weeks. Activity level and aggression were measured for 6 consecutive weeks during the acclimation period. Following acclimation, upper thermal limits of fish from each treatment were measured under two conditions: clear water (&lt; 2 NTU) and turbid water (25 NTU). This was to evaluate effects of acute turbidity exposure that might arise with heavy rain on deforested streams
DOI: 10.6084/m9.figshare.25513153.v1
title: Effects of temperature on fish aggression and the combined impact of temperature and turbidity on thermal tolerance

description: We compare effects of diel-fluctuating versus stable water temperature regimes on the behaviour and upper thermal tolerance (measured as Critical Thermal Maximum, CTmax) of the Bluntnose Minnow, Pimephales notatus. Fish were acclimated to either a static 18ºC, static 24ºC or a diel-fluctuating treatment of 18-24ºC for a total of 10 weeks. Activity level and aggression were measured for 6 consecutive weeks during the acclimation period. Following acclimation, upper thermal limits of fish from each treatment were measured under two conditions: clear water (&lt; 2 NTU) and turbid water (25 NTU). This was to evaluate effects of acute turbidity exposure that might arise with heavy rain on deforested streams
DOI: 10.15468/dl.xftmb7
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Caenolestes caniventer Anthony, 1921"
 ]
}

 The dataset includes 104 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035950-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18739/a29s1kn0t
title: Aerosol, Cloud, and Meteorological Data Over Arctic Sea Ice (May-September, 2008-2010, 2012-2015)

description: The amount of liquid and ice in clouds affects how much they warm or cool the surface in the rapidly warming Arctic. Dust aerosols cause cloud droplets to freeze and may be why clouds at similar temperatures are substantially icier over the Arctic than over the cleaner Antarctic. This data set includes data underlying the figures in Zamora and Kahn (2024), "Dust-driven cloud glaciation over summertime Arctic sea ice" (submitted). We used satellite, reanalysis, and model information to better understand how clouds containing dust were different from other clouds in similar meteorological conditions over summertime sea ice and how this might affect cloud radiative effects. We also assessed which meteorological and aerosol variables were most predictive of cloud changes associated with dust. The data from this study are taken between May to September from the years 2008-2010 and 2012-2015.
 This data set specifically includes information on cloud phases over sea ice between 0.6 to 8.5 kilometers (km) (fC.csv). The rest of the data focuses on clouds at 3 km over sea ice. It includes information on estimated dust-driven increases in cloud glaciation in different meteorological conditions (del2.csv), and whether these changes are significant based on a Wilcoxon rank test (del2p.csv). There are also data on changes in cloud, aerosol, and meteorological properties in different 400 square kilometer (km2) grids within different meteorological conditions that are associated with dust levels that are enhanced from background levels (tog.csv). Lastly, there is information on single-layer clouds at least partially overlapping with 2.5-3.5 km elevation, including the change in cloud radiative effect associated with dust aerosols and associated uncertainties for these clouds, the average FLEXible PARTicle dispersion model (FLEXPART) and Modern-Era Retrospective analysis for Research and Applications, Version 2 (MERRA-2) reanalysis dust concentrations associated with the clouds, the average percent (%) of time that the clouds were at temperatures below -10 degrees Celsius (℃), and the average solar zenith angle for the clouds at the time of measurement (fig2.csv). 
 Supplemental data are also included. The file SFig1.csv includes information on the relationship between MERRA-2 dust or FLEXPART dust and CALIPSO satellite aerosol layers at different altitudes. The file tog_SF3.csv includes information similar to tog.csv, but focuses on cloud differences related to sulfate aerosols instead of dust aerosols.
DOI: 10.15468/dl.w8fx45
title: Occurrence Download

description: A dataset containing 2648 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Material citation, Material sample)",
 "DatasetKey is one of (Arizona State University Herpetology Collection, Anfibios y reptiles de las regiones 30 (Parque Natural Sierra Maderas del Carmen); 31 (Sierra El Burro-Río San Rodrigo); 36 (Sierra La Encantada); y 37 (Sierra El Pino), Coahuila, Anfibios y reptiles de las regiones 30 (Parque Natural Sierra Maderas del Carmen); 31 (Sierra El Burro-Río San Rodrigo); 36 (Sierra La Encantada); y 37 (Sierra El Pino), Coahuila, Computarización de las colecciones de vertebrados terrestres de la Escuela Nacional de Ciencias Biológicas, IPN Fase 4 (Anfibios y reptiles), MSB Amphibian and Reptile Collection (Arctos), LACM Vertebrate Collection, MVZ Herp Collection (Arctos), CAS Herpetology (HERP), UTEP Herpetology (Arctos), KUBI Herpetology Collection)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is one of (ff90b050-c256-11db-b71b-b8a03c50a862, 814cdfb5-d4f8-4453-815f-ea5df98e76bf, 939ed180-aa7b-11db-8edf-b8a03c50a862, 493fe050-055d-11d8-b84f-b8a03c50a862, 8edbbde0-055e-11d8-b850-b8a03c50a862, 66522820-055c-11d8-b84e-b8a03c50a862, 52c8f620-1816-11da-9544-b8a03c50a862, b554c320-0560-11d8-b851-b8a03c50a862)",
 "TaxonKey is Dryophytes arenicolor (Cope, 1866)",
 "Year 1950-2024"
 ]
}

 The dataset includes 2648 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035951-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2fk4nh
title: Occurrence Download

description: A dataset containing 1840 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-70.28427 -18.078, -70.21031 -18.078, -70.21031 -17.97082, -70.28427 -17.97082, -70.28427 -18.078))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 1840 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035953-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7gdv3q
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Caenolestes caniventer Anthony, 1921"
 ]
}

 The dataset includes 33 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035952-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ath3xg
title: Occurrence Download

description: A dataset containing 116 records in GBIF matching the query:
SELECT datasetKey, license, COUNT(*) AS n FROM occurrence WHERE iucnRedListCategory IN ('NT','VU','EN','CR','EW','EX','LC') AND occurrenceStatus = 'PRESENT' AND countryCode = 'ES' AND "year" &gt;= 1980 AND classKey IN (212) AND hasCoordinate = TRUE AND (coordinateUncertaintyInMeters &lt;= 1000 OR coordinateUncertaintyInMeters IS NULL) AND speciesKey IS NOT NULL AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID') AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH') AND "month" IS NOT NULL GROUP BY datasetKey, license

 The dataset's 116 records were derived from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035914-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13291236
title: A transposase-derived gene responsible for human brain development

description: DNA transposable elements and transposase-derived genes are present in most living organisms, including vertebrates, but their function is largely unknown. PiggyBac Transposable Element Derived 5 (PGBD5) is an evolutionarily conserved vertebrate DNA transposase-derived gene with retained nuclease activity in cells. Vertebrate brain development is known to be associated with prominent neuronal cell death and DNA breaks, but their causes and functions are not well understood. Here, we show that PGBD5 contributes to normal brain development in mice and humans, where its deficiency causes disorder of intellectual disability, movement, and seizures. In mice, Pgbd5 is required for the developmental induction of post-mitotic DNA breaks and recurrent somatic genome rearrangements. In the mouse cortex, loss of Pgbd5 leads to aberrant differentiation and gene expression of distinct neuronal populations, including multiple types of glutamatergic neurons, which may explain the features of PGBD5 deficiency in humans. Together, these studies nominate PGBD5 as the long-hypothesized neuronal transposase-derived DNA nuclease required for brain function in mammals.
DOI: 10.5281/zenodo.13294558
title: A transposase-derived gene responsible for human brain development

description: DNA transposable elements and transposase-derived genes are present in most living organisms, including vertebrates, but their function is largely unknown. PiggyBac Transposable Element Derived 5 (PGBD5) is an evolutionarily conserved vertebrate DNA transposase-derived gene with retained nuclease activity in cells. Vertebrate brain development is known to be associated with prominent neuronal cell death and DNA breaks, but their causes and functions are not well understood. Here, we show that PGBD5 contributes to normal brain development in mice and humans, where its deficiency causes disorder of intellectual disability, movement, and seizures. In mice, Pgbd5 is required for the developmental induction of post-mitotic DNA breaks and recurrent somatic genome rearrangements. In the mouse cortex, loss of Pgbd5 leads to aberrant differentiation and gene expression of distinct neuronal populations, including multiple types of glutamatergic neurons, which may explain the features of PGBD5 deficiency in humans. Together, these studies nominate PGBD5 as the long-hypothesized neuronal transposase-derived DNA nuclease required for brain function in mammals.
DOI: 10.5281/zenodo.13863641
title: A transposase-derived gene responsible for human brain development

description: Vertebrate brain development is associated with prominent neuronal cell death and DNA breaks, but their causes and functions are not well understood. DNA transposable elements and transposase-derived genes could contribute to DNA breaks and somatic genome rearrangements, however their contributions to brain development are largely unknown. PiggyBac Transposable Element Derived 5 (PGBD5) is an evolutionarily conserved vertebrate DNA transposase-derived gene with retained nuclease activity in human cells. Here, we show that PGBD5 contributes to normal brain development in mice and humans, and its deficiency causes disorder of intellectual disability, movement, and seizures. In mice, Pgbd5 is required for the developmental induction of post-mitotic DNA breaks and recurrent somatic brain genome rearrangements. In the cerebral cortex, loss of Pgbd5 leads to aberrant differentiation and gene expression of distinct neuronal populations, including specific types of glutamatergic neurons, which can explain the features of PGBD5 deficiency in humans. Thus, PGBD5 is a transposase-derived gene required for brain development in mammals.