cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gea6nu
title: Occurrence Download

description: A dataset containing 66771 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is Italy",
 "DatasetKey is one of (Geneva Herbarium – De Candolle's Prodromus (G-DC), Wikiplantbase #Liguria, Wikiplantbase #Italia, Wikiplantbase #Emilia-Romagna, Observation.org, Nature data from around the World, Segetal flora of Italy)",
 "Geometry POLYGON((8.31069 44.84508,8.31069 44.04708,9.56469 44.04708,9.56469 44.84508,8.31069 44.84508))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 66771 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000596-250221090833381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xanw5a
title: Occurrence Download

description: A dataset containing 13359 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diadema antillarum (Philippi, 1845)"
 ]
}

 The dataset includes 13359 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000597-250221090833381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18112/openneuro.ds005917.v1.0.0
title: NIMH Ketamine Mechanism of Action Study
DOI: 10.25318/1410043201-fra
title: Postes vacants, employés salariés et taux de postes vacants selon les provinces et territoires, données mensuelles désaisonnalisées

description: Nombre de postes vacants et d'employés salariés et taux de postes vacants selon la province et le territoire, 5 derniers mois.
DOI: 10.5281/zenodo.14736122
title: The effects of resistance based post-activation performance enhancement on reaction time and change of direction in basketball players
title: The effects of resistance based post-activation performance enhancement on reaction time and change of direction in basketball players
DOI: 10.5281/zenodo.14736123
title: The effects of resistance based post-activation performance enhancement on reaction time and change of direction in basketball players
title: The effects of resistance based post-activation performance enhancement on reaction time and change of direction in basketball players
DOI: 10.15468/dl.puqm3k
title: Occurrence Download

description: A dataset containing 731367 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mongolia",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 731367 records from 671 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000579-250221090833381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/gm6v653vpy
title: LINF_270022300

description: RNA polymerase II subunit | RPB11; Leishmania infantum (strain JPCM5)
DOI: 10.17632/gyjsdxdgc9
title: Data to replicate: The Geography of Mathematical (Dis)Opportunity

description: Abstract
Research has shown that mathematical proficiency gaps are related to students’ and schools’ indicators of poverty, with fewer studies on neighborhood effects on achievement gaps. Although this literature has accounted for students’ nesting within schools, so far methodological constraints have not allowed researchers to formally account for both multilevel and spatial effects. We contribute to this discussion by simultaneously considering test-takers own socioeconomic standing and the impact of their nesting school and neighborhood structures. Multilevel simultaneous autoregressive (MSAR) models and population-level data of 2.09 million test-takers, whose standardized performances were measured at grades 3 to 8 in New York State, revealed the presence of geography of mathematical (dis)opportunity. Since mathematical performance is spatially dependent across schools and neighborhoods, moving forward, applied researchers should rely on MSAR to account for sources of spatially driven bias that cannot be handled with multilevel models alone. Full replication code and data is provided https://cutt.ly/N4zRstL.
To be featured at AERA OPEN
DOI: 10.17632/38d25y22f5
title: LINF_210024800

description: NIMA-related kinase | NRKC; Leishmania infantum (strain JPCM5)
DOI: 10.15468/dl.6k6zn6
title: Occurrence Download

description: A dataset containing 1060 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "Country is Uruguay"
 ]
 },
 "TaxonKey is one of (Siluriformes)"
 ]
}

 The dataset includes 1060 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000599-250221090833381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/fcjsf59zpt
title: HLA-E Restricted SARS-CoV-2 Specific T Cells from Convalescent COVID19 Patients Suppress Virus Replication Despite HLA Class Ia Downregulation

description: Raw sequencing data (FASTQ files) of the HLA-E-restricted, SARS-CoV-2-specific T cells reported in Yang et al (2023) "HLA-E Restricted SARS-CoV-2 Specific T Cells from Convalescent COVID19 Patients Suppress Virus Replication Despite HLA Class Ia Downregulation" Science Immunology, In press

ABSTRACT
Pathogen specific CD8+ T cell responses restricted by the non-polymorphic non-classical class Ib molecule HLA-E are rarely reported in viral infections. The natural HLA-E ligand is a signal peptide derived from classical class Ia HLA molecules that interacts with the NKG2/CD94 receptors to regulate natural killer (NK) cell functions – but pathogen-derived peptides can also be presented by HLA-E. Here we describe five peptides from severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) that elicited HLA-E restricted CD8+ T cell responses in COVID-19 convalescent patients. These T cell responses were present in the blood at frequencies similar to those reported for classical HLA-Ia-restricted anti-SARS-CoV-2 CD8+ T cells. HLA-E-peptide specific CD8+ T cell clones, which expressed diverse T cell receptors, suppressed SARS-CoV-2 replication in Calu-3 human lung epithelial cells. SARS-CoV-2 infection markedly downregulated classical HLA class I expression in Calu-3 cells and primary reconstituted human airway epithelia cells whereas HLA-E expression was not affected, enabling T cell recognition. Thus HLA-E restricted T cells could contribute to the control of SARS-CoV-2 infection alongside classical T cells.

METHODS
Total RNA of CD8 clones was extracted using a RNeasy Plus Mini Kit (Qiagen). TCR libraries using 100ng RNA were prepared using a SMARTer Human TCR a/b Profiling Kit (Takara Bio) according to the manufacturer instructions. Full length TCR alpha and beta chains were sequenced using a Miseq Reagent Kit v3 (600-cycle) on an Miseq sequencer (Illumina). Raw BCL files were converted to FASTQ format using bcl2fastq (v2.20.0.422). TCR sequences were reconstructed using MiXCR (v3.0.13) 57, using the mixcr analyze amplicon command, and only productive TCRs were included. MiXCR output files were parsed into R (v4.0.1) using tcR (v2.3.2). TCRs were filtered based on clone counts to retain only 1α1β or 2α1β paired TCRs for each clone. Clonality was confirmed by the uniqueness of TCR sequences, where each clone showed only one TCR β chain

NOTE:
Data files are named by Patient ID, Clone ID, and whether the data is alpha or beta chain. Fastq format, compressed by GZIP.
DOI: 10.17632/j3d64mnz6x
title: LINF_360060400

description: Casein kinase II subunit beta | CKB1
Leishmania infantum (strain JPCM5)
DOI: 10.17632/2gsf3y3df5
title: LINF_350045400

description: mitochondrial carrier protein | MCP3
Leishmania infantum (strain JPCM5)
DOI: 10.17632/khs6xyzzd7
title: LINF_250017500

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/vnpvt8n5gv
title: LINF_280018100

description: Calcium-dependent phosphotriesterase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/s64mvk8v7k
title: Drivers of geophagy in red brocket deer (Mazama americana) at Amazonian interior forest mineral licks

description: Mineral licks are key ecological components of the Amazon rainforest, providing critical dietary functions for herbivorous and frugivorous mammals, which help maintain the structure and function of the forest itself through seed and nutrient dispersal. One of the most frequent visitors of interior forest mineral licks in the Amazon is the red brocket deer (Mazama americana), a large-bodied ruminant frugivore and seed predator. While several hypotheses for the drivers of geophagy exist, including mineral supplementation, toxin adsorption, and habitat selection, robust data on geophagy for the red brocket deer for large numbers of mineral licks is nonexistent. We used soil data from 83 mineral licks in conjunction with camera trap data from 52 of those mineral licks and a mixed-effects modeling approach to test the three proposed hypotheses of geophagy for the red brocket deer. We found that consumed soils at mineral licks had elevated concentrations of almost all major and minor biologically active minerals measured, including Ca, Na, Mg, K, Cu, Zn, and Mn. Model results suggest that all three hypotheses hold true to some extent for the red brocket deer, with the greatest support for the mineral supplementation hypothesis, in particular with respect to Mg, Ca, Na, Cu, and Zn. This study provides critical information on the feeding ecology of the red brocket deer in the wild, and the first robust analysis of geophagy of an Amazonian mammal involving a large sample size of interior forest mineral licks.
DOI: 10.17632/zw26g4737g
title: The black-legged tick Ixodes scapularis detects CO₂ without the Haller’s organ

description: This repository contains the raw data for the following publication:

Städele Carola (2023), The black-legged tick Ixodes scapularis detects CO2 without the Haller’s organ


DATA INFO:
**********************************************
Due to storage limitations, we are providing tab delimited .txt files that contain the raw x-y position data of tracked ticks.
Each .txt file contains data from a single tick. The columns are:
 (1) time information in seconds 
 (2) x positions in cm 
 (3) y positions in cm
Further details about each data set can be found in the description of each folder. 

ANALYSIS SCRIPTS:
**********************************************
For analysis, we used custom written MATLAB scripts. The analysis codes are not included in the repository. Requests for access to analysis codes should be directed to the lead contact, Carola Städele (carola@neurobiologie.de).
DOI: 10.17632/drnw3zztr7
title: LINF_210013700

description: ras-related protein Rab21; Leishmania infantum (strain JPCM5)
DOI: 10.17632/9y236v53m4
title: Data for the paper - Sex peptide regulates female receptivity through serotoninergic neurons in Drosophila

description: Data for Y.T. Yang#, S.W. Hu#, X. Li, Y. Sun, P. He, K.A. Kohlmeier, and Y. Zhu, Sex peptide regulates female receptivity through serotoninergic neurons in Drosophila
DOI: 10.17632/j7cjkc9snx
title: Micropolar and micromorphic elastoplastic data

description: CamClay micropolar and micromorphic dataset

Created by Zeyu Xiong, zx2312@columbia.edu on Aug 1, 2023

The dataset consists of the elastoplastic micropolar/micromorphic stress vs. deformation data. 

There are 5 folders containing perfect plastic and hardening data.

 CamClay_mpol_init1: perfect plastic data of Cauchy deformation.

 CamClay_mpol_init2: perfect plastic data of micropolar deformation.

 CamClay_mpol_init3: perfect plastic data of micromorphic deformation.

 DNS2_H: hardening data of micropolar deformation. The micromorphic_ex4_RVE1.csv presents the unseen stress history data for testing purpose.

 DNS3_H: hardening data of micromorphic deformation. The micromorphic_ex5_RVE1.csv presents the unseen stress history data for testing purpose.


Learning tasks:

In each folder, the "data_csv" folder contains all the available sequential stress-strain data in the .csv format and the yield_stress.csv contains the yield stress points sampled from the initial and evolving yield surface.

 Task 1: In "CamClay_init1_mpol", "CamClay_init2_mpol", and "CamClay_init3_mpol", the task is to reconstruct the initial yield surfaces given "yield_stress.csv".

 Task 2: In "DNS2_H" and "DNS3_H", the task is to learn from the sequential data in "data_csv" and produce the test sequential data in "micromorphic_ex4_RVE1.csv" and "micromorphic_ex5_RVE1.csv". The inputs (features) of the sequential data are ('eps11','eps22','eps12', 'k31','k32', 'G111', 'G222', 'Gsym121', 'Gsym212') while the outputs (labels) are ('sig11','sig22','sig12','m13','m23', 'zeta111', 'zeta222', 'zetasym121', 'zetasym212')
DOI: 10.17632/t9976rytct
title: LINF_210022900

description: 2-oxoisovalerate dehydrogenase alpha subunit; Leishmania infantum (strain JPCM5)
DOI: 10.17632/wkcxdk27p2
title: LINF_350049600

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/pfyvjcbj9s
title: LINF_040008500

description: ADP-ribosylation factor
Leishmania infantum (strain JPCM5)
DOI: 10.17632/nvsv8gnrts
title: LINF_130018300

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/4gdh3brdkk
title: LINF_210026900

description: cytochrome c oxidase subunit VI | COX6; Leishmania infantum (strain JPCM5)
DOI: 10.17632/bftm8g926x
title: Low-Carbon Accommodation in Island Tourism Destination: Data on Hotel’s Scrutiny in Implementation of Green Communication Action in Langkawi Island, Malaysia.

description: This dataset presented a low-carbon approach examination and commitment of hotel operators towards green communication action in order to mitigate climate change. The data set provides useful information about the survey on current practices of low-carbon approach among hotels, managers, and hotel staff. The data is useful as a referral among hotel operators in reducing carbon emissions with green communication action. For example, low-carbon behavior in hotel management can be promoted, and the use of electricity, water, and waste consumption can be reduced. In fact, the data can be tested for hotel operators entirely in order to transform conventional hotels into low-carbon hotels.
DOI: 10.17632/98x8pmrsrp
title: Approximate Straight-Line Mechanism with Instantaneous Center at Infinity

description: According to the synthesis method proposed in the paper, the solution region data is obtained by the mechanism synthesis under the conditions given in the example.
DOI: 10.17632/4gnkhfrxc9
title: LINF_350032300

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/46cc2w6dpm
title: LINF_260021900

description: sphingolipid delta 4 desaturase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/x2nh7bvr76
title: Task allocation Dinoponera quadriceps

description: We are providing the Gross Data (Excel spreadsheet) used in the analysis, in addition to the codes/script used in R language.
DOI: 10.17632/66vpmz4hd9
title: LINF_310015650

description: hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/j9zyh6tyj4
title: LINF_210024700

description: choline dehydrogenase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/dwhtwh4dj7
title: Thermal proteome profiling of childhood ALL cell lines for proteoform detection

description: The complexity of the functional proteome extends significantly beyond the protein coding genome resulting in millions of proteoforms. Investigation of proteoforms and their functional roles is important to understand cellular physiology and its deregulation in diseases, but challenging to perform systematically. Here, we apply thermal proteome profiling with deep peptide coverage to detect functional proteoforms in acute lymphoblastic leukemia cell lines with different cytogenetic aberrations. We detect 15,846 proteoforms, capturing differently spliced, post-translationally modified, and cleaved proteins expressed from 9,290 genes. We identify differential coaggregation of proteoform pairs and establish links to disease biology and drug sensitivity specific biomarkers. This approach provides a powerful and unique tool for systematic detection and functional annotation of proteoform groups.
DOI: 10.17632/gvbjvbp7w9
title: Small selective ungulate species differ in habitat use within transformed landscapes of the Overberg, South Africa

description: The Renosterveld vegetation in the Overberg, Western Cape (South Africa) is listed as critically endangered with more than 80% of Renosterveld transformed for agricultural purposes. Remaining natural vegetation consists mostly of small patches that are situated far apart. The landscape between these patches is filled with agricultural land used for grain crops, vineyards, indigenous flower crops and livestock farming. The remaining patches of natural vegetation is being conserved providing the wildlife in the area with corridors and small protected areas. The objective of this study was to determine how the habitat use of five small specialist browser species are affected by anthropogenic land use. These species were bushbuck (Tragelaphus sylvaticus), Cape grysbok (Rhaphicerus melanotis), common duiker (Sylvicapra grimmia), grey rhebok (Pelea capreolus) and steenbok (Rhaphicerus campestris). To determine which site-specific characteristics were the strongest drivers of habitat use during each season we ran occupancy models using camera trap data and covariate data collected around camera trap sites to run single species, single season occupancy models. The results suggest that some species appear dependent on the anthropogenic landscape, while still relying on the natural vegetation for cover and resources. In contrast, other species however appear to be more dependent on the natural landscape and occasionally use the anthropogenic landscape to their advantage.
DOI: 10.17632/ck366d84rt
title: LINF_360064300

description: L-2-hydroxyglutarate dehydrogenase - mitochondrial
Leishmania infantum (strain JPCM5)
DOI: 10.17632/pyx62v29h3
title: Data for - "Lugar de mulher é...na política: Reflexões sobre micro e macroagressões de identidades" published by RAC-Revista de Administração Contemporânea

description: Este arquivo contém os dados qualitativos utilizados no artigo intitulado "Lugar de mulher é...na política: Reflexões sobre micro e macroagressões de identidades".
DOI: 10.17632/9xw92zrnyp
title: LINF_360035100

description: Transportin 2-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/nv63m5z3dr
title: LINF_350028400

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/b69dj53t8g
title: LINF_260008400

description: Nucleoside hydrolase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/pvhs2z5bb7
title: LINF_290019400

description: Amastin surface glycoprotein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/vwtcj4x84r
title: Nanoindentation_WJF

description: The original data to draw the figures for the paper.
DOI: 10.17632/5yczk9nkfx
title: Nd isotopes of the Carboniferous shallow-water carbonates, southern Kazakhstan

description: Shallow-water carbonates were collected in 2017 in the Karatau Mountains, southern Kazakhstan from the Carboniferous succession at Ushozen. Sediments were dissolved to separate and remove terrigenous fractions. Neodymium and samarium were isolated using column chromatography and analyzed by multi-collector mass spectrometer (TIMS). The data span three shallowing-upward cycles in the Serpukhovian of the Ushozen section, which were deposited during interglacial periods.
DOI: 10.17632/gsr4hyzg87
title: Gravity Wave Activity at 100 km baseline in the Mars’ Lower Atmosphere from MGS–TES Nadir Observations.

description: This dataset contains results of the study of gravity wave activity in the lower atmosphere of Mars using spectra collected by Thermal Emission Spectrometer (TES) on Mars Global Surveyor (MGS) spacecraft. See accompanying document 'document.pdf' for description of the data on this dataset.
DOI: 10.17632/22mjwknhww
title: LINF_310024500

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/gs5kw9hmz8
title: DOML instances for optimizing Infrastructure-as-Code deployment configurations

description: This dataset is composed of 12 different DOML instances for solving the problem of optimizing Infrastructure-as-Code deployment configurations.
DOI: 10.15468/dl.bnjrab
title: Occurrence Download

description: A dataset containing 346 species occurrences available in GBIF matching the query:
{
 "GadmGid" : [
 "is DZA.42_1"
 ]
}

 The dataset includes 346 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000600-250221090833381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/vwgxrjkhhm
title: Supplementary materials: Singularity Distance Computations for 3-RPR Manipulators Using Extrinsic Metrics

description: This .zip folder contains additional material for the paper titled "Singularity Distance Computations for 3-RPR Manipulators Using Extrinsic Metrics".
The animations that correspond to Fig . 9, Fig. 11, Fig. 13 Fig. 15 (Incircle radius performance index), Fig. 16, and Fig. 17 of the paper. The paper deals with finding the closest singular configuration along the 1-parametric motion of a 3-RPR manipulator using distance functions for different interpretations of the 3-RPR manipulator. Furthermore, in the paper the performance of existing kinematic pose independent performance indices are compared with the distance function in identifying the closest singular configuration. The computational procedure is based on homotopy continuation algorithms. Please see Fig. 8 for the flow chart for the computational procedure.