cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.8vj2au
title: Occurrence Download

description: A dataset containing 19360 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pastor roseus (Linnaeus, 1758)",
 "BasisOfRecord is one of (Human Observation, Observation)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "Country is one of (Finland, Ireland, Sweden, Cyprus, Portugal, Netherlands, France, Bulgaria, Romania, Spain, Poland, Czechia, Malta, United Kingdom of Great Britain and Northern Ireland, Austria, Croatia, Slovenia, Slovakia, Germany, Denmark, Italy, Belgium, Gibraltar, Lithuania, Greece, Luxembourg, Latvia, Estonia, Hungary)"
 ]
}

 The dataset includes 19360 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036875-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/eec55cbc3dbfc56428629773737ab3e5
title: Plant Pollinator data at HJ Andrews Experimental Forest, 2011 to 2021

description: Despite the importance of plant-pollinator interactions for ecological communities, few long-term observational studies have been conducted of plant-pollinator networks. This study involves the annual collection of plant-pollinator interaction data from up to 18 meadows in the Willamette National Forest, Oregon, including 12 meadows in the HJ Andrews Forest. This study addresses how meadow size, the amount of nearby meadow habitat, weather, degree days, and soil moisture are related to the flowering of meadow plants and the frequency of plant-pollinator interactions.
DOI: 10.15468/dl.wj939y
title: Occurrence Download

description: A dataset containing 337 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((63.37109 0.67867,95.77773 0.67867,95.77773 38.00569,63.37109 38.00569,63.37109 0.67867))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Python molurus (Linnaeus, 1758)"
 ]
}

 The dataset includes 337 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036876-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fmrjzy
title: Occurrence Download

description: A dataset containing 1730 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chimaera monstrosa Linnaeus, 1758"
 ]
}

 The dataset includes 1730 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036877-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cfh9qh
title: Occurrence Download

description: A dataset containing 6767 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Eupithecia abietaria (Goeze, 1781))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6767 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036878-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.385tmd
title: Occurrence Download

description: A dataset containing 39706 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aplocera plagiata (Linnaeus, 1758))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 39706 records from 344 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036881-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3t7zmu
title: Occurrence Download

description: A dataset containing 2139 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centroscymnus coelolepis Barbosa du Bocage & de Brito Capello, 1864"
 ]
}

 The dataset includes 2139 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036883-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25893928
title: Germline missense MUTYH Benign variants

description: Molecular dynamics simulation of the benign variants based on the ClinVar, COSMIC, and various in silico methods, the simulation is up to 100 ns.
DOI: 10.15468/dl.dcrep4
title: Occurrence Download

description: A dataset containing 8553 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Xanthorhoe biriviata (Borkhausen, 1794))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8553 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036884-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25894675
title: Germline missense MUTYH Pathogenic variants

description: Molecular dynamics simulation of the pathogenic variants based on the ClinVar, COSMIC, and various in silico methods, the simulation is up to 100 ns.
DOI: 10.5281/zenodo.11267529
title: Elution profiles and protein interaction data accompanying "Ancient eukaryotic protein interactions illuminate modern genetic disorders"

description:  






DESCRIPTION



FILENAME



LOCATION





LECA 10K OG set



leca_ogs_annotated.xlsx



Paper, Table S1

Zenodo





Summary of biological resources



resource_summary.xlsx



Paper, Table S2

Zenodo





LECA interactome (complexes)



leca_ppis_fdr10_clustered_annotated.xlsx



Paper, Table S3

Zenodo





CFMS - ref proteomes



cfms_ref_proteomes.xlsx



Paper, Table S4

Zenodo





ML - top algorithms



tpot_top_algorithms.xlsx



Paper, Table S5

Zenodo





LECA interactome (pairwise)



leca_ppis_fdr10_pairwise.csv



Zenodo





UniProt Subcellular Localization IDs



uniprot_localization_codes.xlsx



Zenodo





Dollo parsimony - ref proteomes



dollo_parsimony_ref_proteomes.xlsx



Zenodo





Dollo parsimony - input trait matrix



dollo_parsimony_count_matrix.tsv



Zenodo





CFMS - raw elution profiles



amorphea_raw_elution_vectors.csv

excavata_raw_elution_vectors.csv

tsar_raw_elution_vectors.csv

archaeplastida_raw_elution_vectors.csv



Zenodo





CFMS - normalized elution profiles



amorphea_norm_elution_vectors.csv

excavata_norm_elution_vectors.csv

tsar_norm_elution_vectors.csv

archaeplastida_norm_elution_vectors.csv



Zenodo





CFMS/APMS - complete feature matrix



feature_matrix.csv



Zenodo





ML - top features



linearsvc_top_100_features.xlsx



Zenodo





OMIM disease propagation, statistics



omim_disease_propagation_stats.xlsx



Zenodo





OMIM disease propagation, top 20 hits per disease



omim_disease_propagation_top20hits_per_disease.xlsx



Zenodo





Curated OMIM gene-disease relationships for LECA OGs



omim_disease_network.tsv



Zenodo



Curated OMIM gene-disease relationships for human UniProt IDs
omim_disease_groups.csv
Zenodo
DOI: 10.15468/dl.8mj6en
title: Occurrence Download

description: A dataset containing 1738 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lamna nasus (Bonnaterre, 1788)"
 ]
}

 The dataset includes 1738 records from 123 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036885-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2pfkuh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Haplochromis lacrimosus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047472-250827131500795/datasets/export for details.
DOI: 10.15468/dl.4pdahw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oenothera mollissima",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047474-250827131500795/datasets/export for details.
DOI: 10.15468/dl.gfmhgy
title: Occurrence Download

description: A dataset containing 289 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oenothera mollissima",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 289 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047473-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wdhrb8
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oenothera mollissima",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047475-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kku77b
title: Occurrence Download

description: A dataset containing 2137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cecropia pachystachya",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2025",
 "DecimalLatitude is greater than or equal to -90.0",
 "DecimalLatitude is less than or equal to 90.0",
 "DecimalLongitude is greater than or equal to -180.0",
 "DecimalLongitude is less than or equal to 180.0",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2137 records from 149 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047477-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30090760
title: Root Tensile Strength Data from Mississippi River Delta Plain Sites

description: This dataset contains tensile strength (TS) measurements of live <i>Spartina</i> roots collected from four marsh sites in the Mississippi River Delta Plain (MRDP), spanning active and inactive basins under saline and brackish conditions. Roots were tested using a motorized tensile tester, and tensile strength was normalized to cross-sectional area (MPa) to enable comparisons across diameter classes and soil depths.
DOI: 10.6084/m9.figshare.30090760.v1
title: Root Tensile Strength Data from Mississippi River Delta Plain Sites

description: This dataset contains tensile strength (TS) measurements of live <i>Spartina</i> roots collected from four marsh sites in the Mississippi River Delta Plain (MRDP), spanning active and inactive basins under saline and brackish conditions. Roots were tested using a motorized tensile tester, and tensile strength was normalized to cross-sectional area (MPa) to enable comparisons across diameter classes and soil depths.
DOI: 10.15468/dl.9ex6v5
title: Occurrence Download

description: A dataset containing 2264 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nothofagus antarctica"
 ]
}

 The dataset includes 2264 records from 160 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047476-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/zyqvlr
title: Replication Data for: Differences in thermal tolerance and locomotion capacity support distinct dispersal strategies in larvae Halarachnidae mites

description: Data of the experiments of thermal tolerance and locomotion activity of Halarachnidae mites infesting Arctocephalus australis.
DOI: 10.15468/dl.8t9kr4
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Saturniidae",
 "Geometry POLYGON ((-71.49608110813226 -12.91107802069860, \n -71.34654743497030 -12.91107802069860, \n -71.34654743497030 -12.80531091717124, \n -71.49608110813226 -12.80531091717124, \n -71.49608110813226 -12.91107802069860))",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 57 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047478-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.276k65
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oenothera rosea",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047480-250827131500795/datasets/export for details.
DOI: 10.15468/dl.ejsm2a
title: Occurrence Download

description: A dataset containing 61874 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Fish Specimens of Graduate School of Bioresources Mie University"
 ]
}

 The dataset includes 61874 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047466-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bqbst2
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oenothera rosea",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 137 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047479-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e6gyd9
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oenothera rosea",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047481-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.637p2x
title: Occurrence Download

description: A dataset containing 23947 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ostrya carpinifolia"
 ]
}

 The dataset includes 23947 records from 260 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047482-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.szwfnq
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bathyaethiops breuseghemi)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047483-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zrna7n
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oenothera rosea",
 "Country is Chile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 82 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047484-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k4qm8y
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oenothera rosea",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 101 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047485-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.baj4we
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oenothera rosea",
 "Country is Comoros",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047486-250827131500795/datasets/export for details.
DOI: 10.15468/dl.f5swjk
title: Occurrence Download

description: A dataset containing 29663 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ostrya virginiana"
 ]
}

 The dataset includes 29663 records from 369 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047487-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30090796
title: SEM and Machine Learning Root Porosity Dataset from Mississippi River Delta Plain Sites

description: This dataset contains scanning electron microscopy (SEM) images and machine learning (ML)-based segmentation results for quantifying internal porosity of <i>Spartina</i> roots collected from four marsh sites in the Mississippi River Delta Plain (MRDP). The dataset supports analysis of biomechanical trade-offs between tensile strength and porosity in wetland plant roots. The workflow combined high-resolution SEM imaging with a Random Forest classifier trained on manually labeled images to segment root cross-sections into background, voids, and tissue. Post-processing included pore size filtering (removing small speckle noise and retaining the largest, structurally relevant voids above the 98th percentile).
DOI: 10.6084/m9.figshare.30090796.v1
title: SEM and Machine Learning Root Porosity Dataset from Mississippi River Delta Plain Sites

description: This dataset contains scanning electron microscopy (SEM) images and machine learning (ML)-based segmentation results for quantifying internal porosity of <i>Spartina</i> roots collected from four marsh sites in the Mississippi River Delta Plain (MRDP). The dataset supports analysis of biomechanical trade-offs between tensile strength and porosity in wetland plant roots. The workflow combined high-resolution SEM imaging with a Random Forest classifier trained on manually labeled images to segment root cross-sections into background, voids, and tissue. Post-processing included pore size filtering (removing small speckle noise and retaining the largest, structurally relevant voids above the 98th percentile).
DOI: 10.15468/dl.vx5598
title: Occurrence Download

description: A dataset containing 346 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bangsia flavovirens",
 "Year 2010-2025"
 ]
}

 The dataset includes 346 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047488-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bbtqcx
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Oryza nivara"
 ]
}

 The dataset includes 44 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047489-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.523d8g
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oenothera rosea",
 "Country is Eswatini",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047490-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qu7999
title: Occurrence Download

description: A dataset containing 1578 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oenothera rosea",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1578 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047491-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x2rhde
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oenothera rosea",
 "Country is Guatemala",
 "HasCoordinate is true"
 ]
}

 The dataset includes 53 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047492-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xabfuz
title: Occurrence Download

description: A dataset containing 1400 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parrotia persica"
 ]
}

 The dataset includes 1400 records from 128 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047493-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17084497
title: Thermodynamic origin of the phonon  Hall effect in a honeycomb antiferromagnet
DOI: 10.5281/zenodo.17084498
title: Thermodynamic origin of the phonon  Hall effect in a honeycomb antiferromagnet
DOI: 10.15468/dl.e83sya
title: Occurrence Download

description: A dataset containing 222 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Eriocnemis nigrivestis",
 "Year 2023-2025"
 ]
}

 The dataset includes 222 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047495-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.