cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4121/aaeff456-e221-4da8-9a36-fca0a2eaf514.v1
title: 20211109 20211215 Main deployment - GoPro 1 - Nearshore - RealDune/REFLEX

description: GoPro 1 (right from sea to dune) photographs of the main November - December deployment of the RealDune/REFLEX experiments at the Dutch coast in Autumn/Winter 2021/2022. This dataset is part of the data collection 'Nearshore coastal measurements of calm, moderate, and storm conditions at two artificial dunes along the Dutch Coast during the RealDune/REFLEX experiments'.
DOI: 10.4121/e1f993bb-5e0e-434b-b34c-a0e45f19cbee
title: 20211109 20211215 Main deployment - GoPro 2 - Nearshore - RealDune/REFLEX

description: GoPro 2 (left from sea to dune) photographs of the main November - December deployment of the RealDune/REFLEX experiments at the Dutch coast in Autumn/Winter 2021/2022. This dataset is part of the data collection 'Nearshore coastal measurements of calm, moderate, and storm conditions at two artificial dunes along the Dutch Coast during the RealDune/REFLEX experiments'.
DOI: 10.4121/e1f993bb-5e0e-434b-b34c-a0e45f19cbee.v1
title: 20211109 20211215 Main deployment - GoPro 2 - Nearshore - RealDune/REFLEX

description: GoPro 2 (left from sea to dune) photographs of the main November - December deployment of the RealDune/REFLEX experiments at the Dutch coast in Autumn/Winter 2021/2022. This dataset is part of the data collection 'Nearshore coastal measurements of calm, moderate, and storm conditions at two artificial dunes along the Dutch Coast during the RealDune/REFLEX experiments'.
DOI: 10.5519/qd.sfz284ll
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (3808 records)
DOI: 10.57841/casdc.0002898
title: 生物质发酵生产苹果酸
DOI: 10.34740/kaggle/dsv/6682062
title: Golf Play Dataset with Extended Features
DOI: 10.25345/c5ft8dw0g
title: MassIVE MSV000093095 - [SYPHU-SongLab] The Dataset of 5,6,5-guaiacolane-type sesquiterpenes from the daphne genus
title: The datasets for the 5,6,5-guaiacolane-type sesquiterpenes from the daphne genus. To support the further studies of plants of daphne genus.
DOI: 10.34740/kaggle/dsv/6682082
title: Golf Play Dataset with Extended Features
DOI: 10.25345/c5b27q25z
title: MassIVE MSV000093096 - [SYPHU-SongLab] The Dataset of 5,6,7-guaiacolane-type sesquiterpenes from the daphne genus
title: The datasets for the 5,6,7-guaiacolane-type sesquiterpenes from the daphne genus. To support the further studies of plants of daphne genus.
DOI: 10.6084/m9.figshare.24088194
title: Harmonisation_tables.zipApproaches to pollen taxonomic harmonisation in Quaternary palynologyApproaches to pollen taxonomic harmonisation in Quaternary palynology

description: Seven csv files for each of the harmonisation regions and the shapefile for the Birks et al. article on pollen harmonisation.Seven csv files for each of the harmonisation regions and the shapefile for Birks et al. (2023) Approaches to pollen taxonomic harmonisation in Quaternary palynology. Review pf Palaeobotany and Palynology 319: 104989.
DOI: 10.6084/m9.figshare.24088194.v1
title: Harmonisation_tables.zip

description: Seven csv files for each of the harmonisation regions and the shapefile for the Birks et al. article on pollen harmonisation.
DOI: 10.57906/y90h-8w02
title: Census 2011 100% Household and Individual - England and Wales
DOI: 10.25345/c56970816
title: MassIVE MSV000093097 - [SYPHU-SongLab] The Dataset of 5,6-type sesquiterpenes from the daphne genus
title: The datasets for the 5,6-type sesquiterpenes from the daphne genus. To support the further studies of plants of daphne genus.
DOI: 10.12770/72f13a1b-3770-4108-828c-b12aa4249987
title: Barcoding COI B.azoricus MoMARSAT

description: 6 DNA sequences of Bathymodiolus azoricus from COI barcode analysis, Capelinhos Lucky Strike area, Mid-Atlantic Ridge.
DOI: 10.25345/c52j68f7f
title: MassIVE MSV000093098 - [SYPHU-SongLab] The Dataset of acorane-type sesquiterpenes from the daphne genus
title: The datasets for the acorane-type sesquiterpenes from the daphne genus. To support the further studies of plants of daphne genus.
DOI: 10.6084/m9.figshare.24305398
title: G2AN_TM11.5_L_target_contour

description: The NeuroGT (neurogenic tagging) database provides images of whole-brain sections of mice in which neurons that differentiated at a similar time have been genetically tagged. The images of brain sections are displayed in order from the anterior to the posterior end on a web-browser, and the regions containing tagged neurons can be visually confirmed. However, it has been difficult to grasp their location in three-dimensional (3D) space. As a first step toward quantitative analysis of neuronal location, we automatically detected regions of mouse brains containing tagged neurons by using image processing and integrated that information into 3D space. We confirmed that the proposed methods detected brain regions with an average precision of 88% and average recall of 99%. We achieved visualization of 3D reconstructed brain shapes and distribution of tagged neurons in the regions of the brain.
DOI: 10.6084/m9.figshare.24305398.v1
title: G2AN_TM11.5_L_target_contour

description: The NeuroGT (neurogenic tagging) database provides images of whole-brain sections of mice in which neurons that differentiated at a similar time have been genetically tagged. The images of brain sections are displayed in order from the anterior to the posterior end on a web-browser, and the regions containing tagged neurons can be visually confirmed. However, it has been difficult to grasp their location in three-dimensional (3D) space. As a first step toward quantitative analysis of neuronal location, we automatically detected regions of mouse brains containing tagged neurons by using image processing and integrated that information into 3D space. We confirmed that the proposed methods detected brain regions with an average precision of 88% and average recall of 99%. We achieved visualization of 3D reconstructed brain shapes and distribution of tagged neurons in the regions of the brain.
DOI: 10.6084/m9.figshare.24305392
title: Mge-cluster model to type ExPEC plasmid sequences

description: This item uploads all the files constituting the mge-cluster model used in the preprint 'Escherichia coli plasmidome maps the game of clones' to type the ExPEC plasmid sequences
DOI: 10.6084/m9.figshare.24305392.v1
title: Mge-cluster model to type ExPEC plasmid sequences

description: This item uploads all the files constituting the mge-cluster model used in the preprint 'Escherichia coli plasmidome maps the game of clones' to type the ExPEC plasmid sequences
DOI: 10.6084/m9.figshare.24305407
title: G2AN_TM11.5_L_rotate_contour

description: The NeuroGT (neurogenic tagging) database provides images of whole-brain sections of mice in which neurons that differentiated at a similar time have been genetically tagged. The images of brain sections are displayed in order from the anterior to the posterior end on a web-browser, and the regions containing tagged neurons can be visually confirmed. However, it has been difficult to grasp their location in three-dimensional (3D) space. As a first step toward quantitative analysis of neuronal location, we automatically detected regions of mouse brains containing tagged neurons by using image processing and integrated that information into 3D space. We confirmed that the proposed methods detected brain regions with an average precision of 88% and average recall of 99%. We achieved visualization of 3D reconstructed brain shapes and distribution of tagged neurons in the regions of the brain.
DOI: 10.6084/m9.figshare.24305407.v1
title: G2AN_TM11.5_L_rotate_contour

description: The NeuroGT (neurogenic tagging) database provides images of whole-brain sections of mice in which neurons that differentiated at a similar time have been genetically tagged. The images of brain sections are displayed in order from the anterior to the posterior end on a web-browser, and the regions containing tagged neurons can be visually confirmed. However, it has been difficult to grasp their location in three-dimensional (3D) space. As a first step toward quantitative analysis of neuronal location, we automatically detected regions of mouse brains containing tagged neurons by using image processing and integrated that information into 3D space. We confirmed that the proposed methods detected brain regions with an average precision of 88% and average recall of 99%. We achieved visualization of 3D reconstructed brain shapes and distribution of tagged neurons in the regions of the brain.
DOI: 10.25345/c5xs5jt3j
title: MassIVE MSV000093099 - [SYPHU-SongLab] The Dataset of split-ring guaiacolane-type sesquiterpenes from the daphne genus
title: The datasets for the split-ring guaiacolane-type sesquiterpenes from the daphne genus. To support the further studies of plants of daphne genus.
DOI: 10.6067/xcv83x8547
title: Peru Ceramics: Chemical and Descriptive Data
DOI: 10.6084/m9.figshare.19091474.v2
title: Data for Efficacy of vitamin D supplementation on the severity of atopic dermatitis in children: A systematic review and meta-analysis

description: This repository contains underlying data for <b>Efficacy of vitamin D supplementation on the severity of atopic dermatitis in children: A systematic review and meta-analysis</b>, including dataset, figures and software related to our study.
DOI: 10.6084/m9.figshare.22277572
title: Supplementary Material for: Right hepatic and portal vein embolization before right hepatectomy for colorectal cancer liver metastases

description: Colon cancer has had a significant increase in its incidence in recent years. Many of the cases are diagnosed late it is not unusual that a large number of cases present metastatic disease at the time of diagnosis and liver is the main organ where these lesions occur. Surgical approach to this condition has undergone many advances which have allowed a better approach to them. Local techniques such as embolization have gained momentum in recent years and are a great help to the surgical planning. We present the case of a 72-year-old female patient diagnosed with colorectal cancer and metastatic disease. Multiple liver tumors were demonstrated by imaging studies. A staged resection of the primary tumor and the metastatic hepatic tumors was planned. It was decided to perform an embolization of the hepatic artery to cause hypertrophy of the left lobe before the second stage of the surgical approach. With good clinical and laboratorial findings after the surgery. Follow-up with adjuvant chemotherapy, imaging studies and tumor markers is planned. Several publications state that surgical approach of metastatic disease is still controversial, decisions should be made under the context of each patient. Many techniques have shown good results; embolization of the hepatic tumors have a good outcome in the survival rate in selected patients. Hepatic volume and future liver remnant should be always assessed with imaging studies. Each case has to be individualized for the approach of the metastatic disease, always in a coordinated teamwork for maximum benefit of the patient.
DOI: 10.6084/m9.figshare.23634072
title: Supplementary Material for: Clinical course of a rare Epstein–Barr virus-associated smooth muscle tumor and its genomic analysis

description: Epstein–Barr virus (EBV) can rarely induce smooth muscle tumors (SMTs). A 20-year-old female patient underwent kidney transplantation for renal failure. Since then, she has been treated with immunosuppressants, including a calcineurin inhibitor, tacrolimus, and prednisolone, owing to the immunological rejection. Three years later, she developed large liver tumors (diameter &gt; 5 cm) and multiple small lung tumors that were identified as EBV-SMTs based on the results of liver biopsy/histopathology. No intervention was performed, except for the addition of an mTOR inhibitor, everolimus, which inhibits both immune reaction and SMT growth. Finally, after 8 years, the transplanted kidney became nonfunctional and immunosuppressant administration became unnecessary as urinary dialysis was started. Under these circumstances, SMT growth was observed despite the absence of immunosuppressant administration. Three months after the cessation of the immunosuppressants, EBV-SMTs in the liver and lungs shrank slightly. To the best of our knowledge, this is the first report on the genomic profile of this rare tumor. The clinical course of our patient indicates that EBV can induce SMTs, and immunological suppression of EBV may inhibit the activity of these tumors.
DOI: 10.6084/m9.figshare.23704209
title: Supplementary Material for: Cryptosporidiosis, an uncommon complication after allogeneic stem-cell transplantation

description: Parasitic infections by Cryptosporidium species are rare but can be life-threatening disease after allogeneic stem-cell transplantation (allo-SCT). Here, we reported a case of cryptosporidiosis occurring after a reduced-intensity conditioning (RIC) and allo-SCT in a 64-year-old-farmer with diffuse large B-cell lymphoma (DLBCL). Around Day 70 after allo-SCT, he presented diarrhea attributed to Graft-versus-Host Disease (GvHD) and was treated by immunosuppressive therapy. Due to the patient’s worsening clinical condition, a biopsy review was performed, revealing evidence of cryptosporiosis. Therefore, immunosuppressive therapy was progressively decreased, and antimicrobial therapy including paromomycin and azithromycin was initiated. Following an increase in diarrhea, a second-line treatment with nitazoxanide was administered, resulting in gradual improvement of symptoms. However, recurrence of cryptosporidiosis occurred despite treatment with paromomycin at 6 months after transplant and after an episode of GvHD recurrence and colic cytomegalovirus (CMV) reactivation. Antiparasitic treatment was stopped and azithromycin and rifaximine were started. Immunosuppressive therapy was also reduced. The good clinical evolution allowed for the cessation of all medications. In conclusion, Cryptosporidium infection can complicate allo-SCT and be mistaken for GvHD at the clinical and histologic level. Early and accurate diagnosis is all the more important as the therapeutic approach for the two conditions is opposite: reduction versus intensification of immunosuppressive therapy. Nitazoxamide, paromomycin and azithromycin are the first therapeutic options.
DOI: 10.6084/m9.figshare.23884986
title: Supplementary Material for: Cardiac troponin T and NT-proBNP for prediction of 30-day readmission or death in patients with acute dyspnea: Data from the Akershus Cardiac Examination 2 Study

description: Introduction: N-terminal pro-B-type natriuretic peptide (NT-proBNP) and cardiac troponin T (cTnT) measurements are recommended in patients with acute dyspnea. We aimed to assess the prognostic merit of cTnT compared to NT-proBNP for 30-day readmission or death in patients hospitalized with acute dyspnea. Methods: We measured cTnT and NT-proBNP within 24 hours in 314 patients hospitalized with acute dyspnea and adjudicated the cause of the index admission. Time to first event of readmission or death ≤30 days after hospital discharge was recorded and cTnT and NT-proBNP measurements were compared head-to-head. Results: Five patients died during the index admission and were excluded from the study. Patients who died (7/309) or were readmitted (71/309) within 30 days had higher cTnT concentrations (median 29.1, Q1-Q3 18.2-73.9 ng/L) compared to patient who survived and were not readmitted (median 19.4, Q1-Q3 8.4-36.1 ng/L; p &lt;0.001). There were no statistically significant differences in NT proBNP concentrations when stratifying patients according to readmission or death within 30 days: median 1540.6, Q1-Q3 424-5571 ng/L vs. median 984, Q1-Q3 201-3600 (p = 0.07). cTnT concentrations separated patients with poor and favorable outcomes, both for the total cohort and for patients with adjudicated heart failure (HF). cTnT concentrations were associated with readmission or death within 30 days after discharge, both in the total cohort (adjusted hazard ratio [aHR] 1.65, 95% CI 1.30-2.08) and in patients with HF (aHR 1.60, 95% CI 1.15-2.24). In contrast, NT-proBNP concentrations were not associated with prognosis in the total cohort (aHR 1.11, 95% CI 0.94-1.31) or in patients with adjudicated HF (aHR 1.03, 95% CI 0.78-1.37). In the subgroup analysis of HF patients, where patients with acute HF were grouped according to LVEF (HFpEF and HFrEF), cTnT and NT proBNP did not predict short-term outcomes for HFrEF, but cTnT predicted short-term outcomes in HFpEF patients. Conclusions: cTnT concentrations associate with post-discharge 30-day readmission or death in patients hospitalized with acute dyspnea, as well as in in patients adjudicated HF. The association of cTnT with outcomes in HF appears driven by strong associations of cTnT in patients with HFpEF.
DOI: 10.6084/m9.figshare.23998329
title: Supplementary Material for: Assessment of the needs of nephrology divisions to implement return of clinically significant research genetic results: a survey of Nephrotic Syndrome Study Network (NEPTUNE) investigators

description: Introduction: There is an increasing need to return genetic testing results to patients with kidney disease who first were genotyped on a research basis. Operationalizing this process in nephrology clinics is challenged by a limited number of genetic providers with whom to partner and a general lack of support services for all clinicians. Methods: We administered a survey in March 2022 to assess the current ability and ongoing needs of nephrology divisions to return clinically significant research genetic results to patients and to implement clinical genetic testing. This survey was distributed to institutions within the Nephrotic Syndrome Study Network (NEPTUNE) as part of the planning process for return of research genetic results to participants with pathogenic variants in Mendelian nephrotic syndrome genes. Results: 27 of 28 sites (96%) completed the survey. 59% (n= 16) of sites said they could handle return of research genetic results independently, with the rest expressing hesitation about the volume and complexity of patients and the limited resources and access to genetics services. 81% (n=22) of these institutions did have a genetics clinic and 26% (n=7) have a nephrology genetics clinic. However, 70% (n= 10) of these clinics have a waiting time over one month. 89% of divisions (n=24) are conducting genetic testing and 96% of those (n=23) use a kidney multi-gene panel. In 46% of divisions (n=11), nephrologists are handling logistics of obtaining genetic testing samples themselves. Conclusion: We identified specific areas of support needed for return of clinically significant genetic results from research studies. While the surveyed nephrologists are conducting genetic testing, there are limitations in the support services available. This survey will help guide other research studies that wish to return genetic results to participants and also highlights the need for increasing support to effectively operationalize genetic testing in nephrology clinics.
DOI: 10.6084/m9.figshare.21968315
title: Supplementary Material for: Progression of Recurrent Pancreatitis to Chronic Pancreatitis within 3 Years due to <i>SPINK1</i> Mutation IVS3+2T&gt;C

description: When the etiology of pancreatitis cannot be determined despite sufficient investigation, recurrence and progression to chronic pancreatitis often involve genetic mutations. Herein, we describe a case of recurrent pancreatitis with the IVS3+2T&gt;C mutation in the serine protease inhibitor Kazal type 1 (<i>SPINK1</i>) gene that progressed to chronic pancreatitis in only 3 years. A 35-year-old man was referred to our hospital, where he was diagnosed with mild pancreatitis and was treated conservatively. However, the patient experienced recurrent episodes of pancreatitis, which progressed to become chronic pancreatitis with a pancreatic calcification 1 year later. After 3 years, the patient developed pancreatic duct stenosis and required a pancreatic duct stent placement. Regarding the cause of chronic pancreatitis, alcohol abuse was ruled out based on history taking. Considering the course of treatment, autoimmune pancreatitis and obstructive pancreatitis, such as pancreatic divisum, were also ruled out. Finally, a germline genetic test was performed to determine the etiology of pancreatitis, which revealed the IVS3+2T&gt;C mutation in <i>SPINK1</i>. This case shows the importance of genetic testing in patients with idiopathic pancreatitis to determine their etiology and is a rare incident that can report the progression of the disease from acute to chronic pancreatitis.
DOI: 10.6084/m9.figshare.23275823
title: Supplementary Material for: Gastric Metastasis 5 Years after Primary Invasive Lobular Adenocarcinoma of the Breast

description: Breast cancers metastasize most commonly to the bone, brain, liver, and lungs, but rarely to the gastrointestinal tract. Although metastatic breast carcinomas in the stomach can be confused with primary gastric cancers due to their nonspecific presentation and rare incidence, it is important to differentiate the two since the treatment is different. Clinical suspicion is imperative for a prompt endoscopic evaluation and a definitive diagnosis that will lead to appropriate treatment. Therefore, it is important for clinicians to be aware of the possibility of gastric metastasis of breast cancers, especially in those with a history of invasive lobular breast carcinoma and a new onset of gastrointestinal symptoms.
DOI: 10.6084/m9.figshare.23500974
title: Supplementary Material for: Gastrointestinal Eosinophilic Granulomatosis with Polyangiitis following a <i>Clostridium difficile</i> Infection

description: Eosinophilic granulomatosis with polyangiitis (EGPA), historically named Churg-Strauss syndrome, is a rare vasculitis affecting small- and medium-sized blood vessels. The disease has a predilection for numerous organs including the lungs, sinuses, kidneys, heart, nerves, and gastrointestinal tract but is prominently associated with asthma, rhinosinusitis, and eosinophilia. Gastrointestinal involvement is common; however, a gastrointestinal manifestation as the cardinal symptom following an infection is atypical. Here, we present a case of a 61-year-old male who presented with persistent diarrhea following a toxigenic <i>Clostridium difficile</i> infection despite multiple antibiotic courses. Repeat testing confirmed eradication of the infection, and further evaluation with colon biopsy revealed small and medium-sized vasculitis with eosinophilic infiltration and granulomas. Treatment with prednisone and cyclophosphamide resulted in rapid improvement of his diarrhea. Gastrointestinal symptoms in EGPA are associated with worse prognosis, so prompt identification and treatment of the disease is crucial. EGPA is rarely documented in histopathological samples from the gastrointestinal tract as endoscopic biopsies are typically too superficial to sample the submucosal layer containing the affected vessels. Additionally, the link between EGPA and infections as a potential trigger has not been clearly established, but gastrointestinal EGPA manifesting after a colonic infection raises concerns that this may have been a triggering event. Ultimately, further study is needed to understand, diagnose, and treat gastrointestinal and postinfection EGPA.