cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/4zj3kz34c5
title: cisplatin-damaged gene locus-analysis results

description: Cisplatin is a DNA-targeting chemotherapeutic, yet its damaged gene loci are largely unexplored. We utilized a forward chemical genetics strategy to map 7578 cisplatin-damaged genes (CDGs) with &gt;12 fold-enrichment from A549 human lung cancer cells, of which the highly associated signalling pathways include sperm motility, molecular mechanism of cancer, and protein kinase A signalling. The three most frequently cisplatinated penta-nucleotide motifs and genomic region are CTGGG, CCAGG and GCTGG, and promoter, respectively. Among the CDGs are 1330 enzyme, 747 transcription regulator and 486 transporter genes. Importantly, cisplatin targeted 306 protein kinase genes, accounting for 59% of putative protein kinase genes in the human genome, and 92 protein phosphatase genes. This indicates that cisplatin genome-wide disturbs protein phosphorylation. This data set contains the original sequencing data of two biological replicates, matching results to the hg38 genome, and the analysis results of the distribution of the damage areas identified by the two sequencing results.
DOI: 10.17632/6kch68byyn
title: Iterative Parallel Crank-Nicolson Method

description: We demonstrate the rapid convergence of an iterative approximation that enables the Crank-Nicolson method for solving partial differential equations to be parallelized with arbitrarily small error, so long as the temporal step size is kept sufficiently small compared to the square of the spatial step size. Unlike the original Crank-Nicolson method, our method can handle non-linear terms. We apply the new method specifically to linear and non-linear 1-D Schrödinger equations, but it can be applied to any parabolic partial differential equation, such as those used to describe heat flow, diffusion, or dynamics of financial markets. The extension of the method to handle cyclic boundary conditions or 3-D wavefunctions is straightforward. Example code is given in C++. Included is the [iterative_parallel_CN.cpp] code file, which can be compiled with $ g++ -fopenmp iterative_parallel_CN.cpp -std=c++11 -lm -Wall -O3 -o iterative_parallel_CN.exe The input file [iterative_parallel_CN.inp] contains the variables to be given to the program when run: $ ./iterative_parallel_CN.exe The results are written to multiple raw files [iterative_parallel_CN_Xiterations_XXXXXX.dat], and one summary file [iterative_parallel_CN_summary.dat]. The raw files can be turned into an animation with gnuplot using the file animate.gpi: $ gnuplot animate.gpi This will produce a GIF of whatever scenario you put into the .inp file (by default, a Gaussian oscillating in a harmonic trap).
DOI: 10.17632/6krw94s442
title: Data for: Riverine Mg isotopes response to glacial weathering within the Muztag catchment of the eastern Pamir Plateau

description: Data set 1: Major ions, Mg isotopes, 87Sr/86Sr, saturation indices of calcite (CSI) and dolomite (DSI) of river and spring water samples collected during the high and low water discharge (Qw) periods within the Muztag catchment. Data of glacial rivers in Iceland, Greenland and South Island, New Zealand are from Wimpenny et al. (2010, 2011), Pogge von Strandmann et al. (2019a, b) and Hindshaw et al. (2019). Data set 2: Chemical compositions, Mg and Sr isotopic ratios in river sediment, eolian deposit, and typical rock samples collected within the Muztag catchment. Mg isotopic data for typical silicate and carbonate rocks (prefixed by ett) from Tipper et al. (2006a, b) are also listed.
DOI: 10.17632/733fwpsrfb
title: Data for: Turbidity increases risk perception but constrains collective behaviour during foraging by fish shoals

description: Data per trial for study presented in: Turbidity increases risk perception but constrains collective behaviour during foraging by fish shoals
DOI: 10.17632/7x7x9fygwt
title: LINF_020010600

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/8gx4p2x5vw
title: The row data  presented in Data of combination effect of atovaquone, mefloquine and 3-bromopyruvic acid against Echinococcus multilocularis protoscoleces.

description: The dataset presented here is related to a previous research article titled “Mitochondrial Complex III in Larval Stage of Echinococcus multilocularis as a Potential Chemotherapeutic Target and in vivo Efficacy of Atovaquone Against Primary Hydatid Cysts”[1]. In this report, data were collected by aerobic and anaerobic culture assay of E. multilocularis protscoleces in the presence of 3 anti-echinococcal drug candidates (atovaquone, mefloquine and 3-bromopropionic acid). The data were analyzed by viability of the protoscoleces between day 0 to day 7 from adding drug candidates. In aerobic condition, all drug candidates gave damage to the protoscoleces as described previously [1, 2, 3, 4]. Mefroquine alone and combination use of atovaquone with mefloquine immediately eliminated the protoscoleces while combination of atovaquone with 3-bromopyruvic acid did not showed clear synergy effect. In anaerobic condition, mefloquine alone and combination of atovaquone with mefloquine eliminated protoscoleces immadiately. 3-bromopyruvic acid showed stronger efficacy than that of aerobic condition. Furthermore, combination of atvaquone with 3-bromopruvic acid eliminated the protoscoleces, indicated synergy effect appeared under only anaerobic condition. The data clarified combination use of these three drug eliminated protoscoleces in both aerobic- and anaerobic conditon, which suggested that these could inhibit Echinococcus multilocularis aerobic and anaerobic respiration pathways in vivo. The data would be useful for the development of new drug dosing method for alveolar echinococosis.
DOI: 10.17632/9f7v545xcw
title: E. coli and total coliform quantities before and after anaerobic digestion

description: This data shows the quantities of E. coli and total coliforms before and after anaerobic digestion. The six digesters used were ambient temperature fixed-dome household-scale digesters in Bishoftu, Ethiopia, 2020. Testing took place over five sampling dates at nine days apart i.e. over 36 days. Membrane lactose glucuronide agar (MLGA) was used as a plating media, with plates incubated at 30 ˚C for four hours and at 37 ˚C for 14 hours before enumeration.
DOI: 10.17632/9sjd7nmdr8
title: HARMONIZING WORK SAFETY AND HEALTH PRACTICES TOWARDS TECHNICIANS PRODUCTIVITY IN THE WORKPLACE: A MODIFIED THEORY OF PLANNED BEHAVIOUR

description: The dataset combines the theory of planned behaviour and safety management as it enhance safety performance
DOI: 10.17632/gryttgptsg
title: SDCDTP

description: The instances at hand were used for the computational experiments in "Wolfinger, D., Gansterer, M., Doerner, K. F. (2023). Solving the Stochastic Dynamic Contagious Disease Testing Problem. (submitted)."
DOI: 10.17632/hwmm8bsjpd
title: Global horizontal irradiation data in Brazilian typical meteorological years

description: Global horizontal irradiation data and building performance simulation results derived from the research "Assessment of solar radiation data quality in typical meteorological years and its influence on the building performance simulation".
DOI: 10.17632/hwz9256y2r
title: Innovative Capabilities and Competitive Advantage in the Era of Industry 4.0 a Study in Trucking Industry

description: Survey data from 423 truck companies in Indonesia
DOI: 10.17632/hykfngryv9
title: 2020WR028983

description: The file folder (Fig5) is the observed and the simulated water levels of Tangyin, Xinzi and Duchang stations from 2010 to 2011. The file folder (Fig6) is the raster of landscape from the remote sensing and the simulated results of landscape type by using the MCE–CA–Markov model. The file folder (Fig7) is the spatial distribution raster of water body distance and landscape type with and without sluice. The file folder (Fig8) is the distribution raster of the habitat suitability for Grus leucogeranus without and with sluice operation in Rules 1 and 2.
DOI: 10.17632/jmgng9dbc3
title: Health professions faculty's perception of teaching and learning during the COVID-19 pandemic

description: Data cleaning and analysis. Questionnaire design
DOI: 10.17632/pfs8vpt9zs
title: Supplementary Information - Muscle Fiber Morphometric Analysis (MusMA): a Simple and Objective Tool to Assess the Size and Shape of Striated Muscle Fibers 

description: Here, we tested for the association between MusMA data and skeletal striated muscle functioning, which suggests that MusMA can complement and make the diagnosis of skeletal muscle alterations more complete. To striated cardiac muscle, we also showed that data from MusMA strongly correlated with markers of cardiovascular risk, suggesting that MusMA has the potential to be used in the prognosis of heart conditions.
DOI: 10.17632/pfwkzxn25p
title: LINF_310024300

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/rfpsg6939c
title: GID E3 ligase supramolecular chelate assembly configures multipronged ubiquitin targeting of an oligomeric metabolic enzyme. Sherpa et al.
DOI: 10.17632/sckwd9jgnc
title: A surge of DNA damage links transcriptional reprogramming and hematopoietic deficit in Fanconi anemia

description: Impaired DNA crosslink repair leads to Fanconi anemia (FA), characterized by a unique manifestation of bone marrow failure and pancytopenia among diseases caused by DNA damage response defects. As a recessive germline disorder, why the hematopoietic hierarchy is specifically affected is not fully understood. We find that reprogramming transcription during hematopoietic differentiation results in an overload of genotoxic stress, which causes aborted differentiation and depletion of FA mutant progenitor cells. The onset of DNA damage most likely arises from formaldehyde, an obligate by-product of oxidative protein demethylation during transcription regulation. Our results demonstrate that rapid and extensive transcription reprogramming associated with hematopoietic differentiation poses a major threat to genome stability and cell viability in the absence of the FA pathway. The connection between differentiation and DNA damage accumulation reveals a novel mechanism of genome scarring and is critical to exploring therapies to counteract the aplastic anemia for the treatment of FA patients.
DOI: 10.17632/sydmxykh6w
title: Teknik Informatika, Program Studi Bagi Peminat Teknologi Informasi dan Sosial Media

description: Teknik Informatika adalah salah satu program studi yang banyak diminati di perguruan tinggi. Program studi ini membahas tentang pengembangan teknologi informasi, mulai dari desain, pengembangan, implementasi, hingga pengelolaan sistem informasi. 

Selain itu, lulusan program studi Teknik Informatika juga mampu mengembangkan aplikasi dan perangkat lunak yang berkualitas tinggi. Dalam bidang teknologi informasi, keahlian dalam mengembangkan aplikasi dan perangkat lunak merupakan hal yang sangat penting. 

Program studi Teknik Informatika mempersiapkan mahasiswanya untuk memiliki pengetahuan dan keterampilan yang dibutuhkan dalam mengembangkan aplikasi dan perangkat lunak yang berkualitas tinggi. 

Mahasiswa Teknik Informatika juga diajarkan untuk memahami prinsip-prinsip dasar dalam desain dan pengembangan sistem informasi, sehingga mereka mampu menghasilkan sistem informasi yang efektif dan efisien. 

Selain itu, program studi Teknik Informatika juga menawarkan potensi karir yang menjanjikan di masa depan. Karena perkembangan teknologi informasi yang semakin pesat, kebutuhan akan tenaga ahli di bidang ini juga semakin tinggi. 

Lulusan program studi Teknik Informatika memiliki peluang karir yang luas, baik sebagai pengembang aplikasi dan perangkat lunak, konsultan sistem informasi, analis sistem, atau bahkan menjadi pengusaha yang sukses di bidang teknologi informasi. 

Namun, untuk menjadi seorang ahli di bidang teknologi informasi, mahasiswa Teknik Informatika perlu memiliki dedikasi dan semangat yang tinggi dalam mengembangkan keterampilan dan keahlian. 

Mereka juga perlu terus mengikuti perkembangan terbaru dalam bidang teknologi informasi, sehingga mereka mampu menghasilkan solusi yang inovatif dan kreatif. Selain itu, mahasiswa Teknik Informatika juga perlu memiliki kemampuan berkomunikasi dan bekerja dalam tim, karena dalam mengembangkan sistem informasi, kolaborasi dan kerjasama antara tim sangatlah penting.

Dalam kesimpulannya, Teknik Informatika merupakan program studi yang menarik bagi mereka yang tertarik dengan teknologi informasi. Semisal tentang ChatGPT, Sosial Media, Facebook, Instagram, Script, Kecerdasan Buatan / Artificial Intelligence, dan masih banyak lagi.

Program studi ini menawarkan banyak peluang karir yang menjanjikan di masa depan, tetapi juga membutuhkan dedikasi dan semangat yang tinggi dalam mengembangkan keterampilan dan keahlian di bidang teknologi informasi. 

Mahasiswa Teknik Informatika juga perlu terus mengikuti perkembangan terbaru dalam bidang ini dan memiliki kemampuan berkomunikasi dan bekerja dalam tim untuk menjadi ahli yang sukses di bidang teknologi informasi.
DOI: 10.17632/tfb7t74fsk
title: Data for: Render Unto Caesar: Taxes, Charity, and Political Islam

description: Data and Replication do files
DOI: 10.17632/tj6v63vr8r
title: The effects of grass silage additive type and barley grain preservation in dairy cows; Supplemental material

description: Supplemental material regarding "The effects of grass silage additive type and barley grain preservation method on rumen function, microbial ecology, and energy metabolism of dairy cows"
DOI: 10.17632/vpx8mhgwdb
title: Comparing Efficacy of Dry Needling and Myofascial Release on Pain Pressure Sensitivity, Mobility, Impairment and Health Related Quality of life in patients with Tension-type Headache.

description: This randomized clinical study aims to compare efficacy of two interventions Dry needling and Myofascial release. Patient age between 20-40 years are recruited. Outcome measures used are Visual analogue Scale (VAS), Digital Algometer and two questionnaires (HDI and HIT-6). Total Intervention period is of 2 weeks and each intervention is given for 3 days in a week for consecutive 2 weeks.
DOI: 10.17632/wr9wsvjkh3
title: LINF_230005800

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/zdmpdkb2wv
title: Table and figure

description: The supplementary tables and figures in this document facilitate the interpretation of the results obtained. The growth kinetics of Limosilactobacillus fermentum UCO-979C in modified MRS broth were determined. The figures and tables contain the results obtained for the mathematical modeling and growth curves of the strain under the study culture conditions.
DOI: 10.17632/2chc5kgx7y
title: Data for "Mild uncoupling of mitochondria synergistically enhances senolytic specificity and sensitivity of BH3 mimetics"

description: Original data for the main and supplementary figures for "Mild uncoupling of mitochondria synergistically enhances senolytic specificity and sensitivity of BH3 mimetics" by Fielder et al.
DOI: 10.17632/4mgywtcj9j
title: Questionnaire of the pilot study on Digital Mathematical Discussion

description: This dataset includes the questions asked to the pre-service teachers involved in the pilot study on Digital Mathematical Discussion carried out in December 2022
DOI: 10.17632/4rdpbdrssz
title: Database - Psychometric properties of the Peruvian version of the Gross Motor Development Test - Third Edition

description: Psychometric properties of the Peruvian version of the Gross Motor Development Test - Third Edition
DOI: 10.17632/8f66v4vzj8
title: LINF_330017600

description: PSP1-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/f2ff77b9pk
title: Data of “First-Principles Study of the Tensile Properties and Failure Mechanism of the Al/Al3Ti Interface”

description: In this paper, the most stable interface model was determined by calculating the interface adhesion work of Al(111)/Al3Ti(112). Based on this, the tensile model of the Al/Al3Ti interface was established and the first-principles tensile experiment was carried out. The stress-strain curve, deformation energy-strain curve, bond length, bond angle, lattice constant and charge distribution of the Al/Al3Ti interface during tensile process were calculated, and the mechanism of the Al/Al3Ti interface deformation and failure under tensile stress was revealed.
DOI: 10.17632/f9h2n4yckv
title: A renewed approach for checking programming code cloning

description: This code is used for building and implementing  a novel clone detection approach over existing software and applications. This code is extracting the files from a pre-processed code database.  The features of the code has been extracted and stored in matrix.  Eventually, To extract the clones a lazy machine learning algorithm has been applied. This code has been used  to construct two layer meta-classifier and optimize for maximum accuracy.
DOI: 10.17632/hr3j3yztxb
title: Programming Cell-Free Biosensors with DNA Strand Displacement Circuits

description: Cell-free biosensors are emerging as powerful platforms for monitoring human and environmental health. Here, we expand the capabilities of biosensors by interfacing their outputs with toehold-mediated strand displacement, a dynamic DNA nanotechnology that enables molecular computation through programmable interactions between nucleic acid strands. We develop design rules for interfacing small molecule sensing allosteric transcription factor biosensors with strand displacement circuits as well as for constructing hybrid RNA-DNA circuits that allow fine-tuning of reaction kinetics. We then use these design rules to build twelve different circuits that implement a range of logic functions (NOT, OR, AND, IMPLY, NIMPLY, NAND). Finally, we demonstrate a circuit that acts like an analog-to-digital converter to create a series of binary outputs that encode the concentration range of the molecule being detected. We believe this work establishes a pathway to create “smart” diagnostics that use molecular computations to enhance the speed and utility of biosensors.

Supplementary data file 2 includes all unprocessed, uncropped polyacrylamide gel images shown in the manuscript and supplementary data file 3 includes all source data presented in this study generated by plate reader measurements, Qubit measurements and Fiji-ImageJ analysis. Supplementary data file 2 is provided as a zip file with each image annotated with a text file. All gel images shown in this file are urea-PAGE-TBE-gels that were stained with SYBR gold and imaged using a BioRad ChemiDoc imaging system.
DOI: 10.17632/k585z4sddm
title: Compact Raman Lidar VORTEX_SE 2018

description: This data set contains the observations from the Compact Raman Lidar (CRL) that was deployed on the NOAA P-3 aircraft for VORTEX-SE 2018. The CRL provided water vapor, temperature, and aerosol profiles along the NOAA P-3 aircraft flight track. The P-3 flew at locations around the Southeast United States during VORTEX-SE 2018 observing periods. This data set includes the CRL data for each flight and quicklook imagery for each flight.
DOI: 10.17632/s3j4r332yc
title: LINF_030007900

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/tbm8tv27z7
title: Synthetic Datasets on the Product Portfolio Planning (PPP) Problem

description: This repository contains 135 synthetic datasets of different sizes for the product portfolio planning (PPP) problem. The synthetic datasets were first used to verify a novel probability-based discrete particle swarm optimization (PSO) algorithm for the PPP problem. Please refer to the following paper for more information about the PSO algorithm and the PPP problem datasets:

Liu X, Li A. An improved probability-based discrete particle swarm optimization algorithm for solving the product portfolio planning problem. Research Square; 2022. DOI: 10.21203/rs.3.rs-1860671/v1.

Each dataset is contained in a folder named “AXX-LXX-SXX-CXX-RXX”. “A” denotes the number of attributes (including price), “L” denotes the number of levels of each attribute, “S” denotes the number of segments, and “C” denotes the number of competitive products in the market. For a “AXX-LXX-SXX-CXX”, 5 datasets are generated. “R” is used as ID for datasets with the same “AXX-LXX-SXX-CXX”. 

In each folder, two CSV files named “probinfo.csv” and “data.csv” are included. The descriptions of the two files are shown below.

1. probinfo.csv
This file provides related information for the dataset.

LSL: The lower specification limit in the process capability index (PCI) (can be changed).
beta: A constant (the average cost per variation of process capabilities) (can be changed).
maxProdNum: The maximum number of potential products (can be changed). (In the paper, it is set as J=5 or J=8.) 
muP: A scale parameter in the multinomial logit (MNL) choice model (can be changed).
AttrNum: The number of attributes.
numLevels: The number of levels of each attribute.
Prices: possible prices for a product (can be changed, but the number of prices should be equal to numLevels).
numSeg: The number of segments.
SegSize: The size of each segment.
Competitive Product Num: The number of competitive products.
Product 1: The setting of the first competitive product.
Product 2: The setting of the second competitive product.
AttrIndex: Just Used to generate the dataset, can be neglected during using the dataset. 

Other parameters used for solving the PPP problem should be given by researchers in their programs.

2. data.csv
The part-worth utilities and standard times are stored in this file.

AttribeteLevel: ID to show different attribute levels. A1-1 means the first level for the first attribute.
s1-s4: Part-worth utilities for each attribute level for each segment (segments 1 to 4). 
time: Mean value of the part-worth standard time for each attribute level
variance_time: Standard deviation of the part-worth standard time for each attribute level
utility_weight: Weight for each attribute level, which is used to calculate the overall utility for a product.
cost_weight: Weight for the time of each attribute level, which is used to estimate the overall cost for a product.
DOI: 10.17632/txxt8f4n8j
title: LINF_340010000

description: calcium channel protein
Leishmania infantum (strain JPCM5)
DOI: 10.17632/vw5g5b6bw5
title: The cpDNA sequence

description: Fragments of cpDNA sequence from S. tonkinensis
DOI: 10.17632/vzsx6k32zw
title: LINF_270013700

description: Dimeric α-β barrel domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/wkfjr833rn
title: Outcomes of patients with ST-segment myocardial infarction admitted during the COVID-19 pandemic – a prospective, observational cohort study from a tertiary care centre in Germany

description: Outcomes of Patients With ST-Segment Elevation Myocardial Infarction Admitted During COVID-19 Pandemic Lockdown in Germany – Results of a Single Center Prospective Cohort Study, Data supplement
DOI: 10.17632/4n4rjp9pdk
title: Synergistic interactions between tocol and phenolic extracts from different tree nut species against human cancer cell lines

description: The phenolic compounds and tocols from tree nuts have an effect to reduce cell viability, however the combination of both extracts of pecan nut, walnut and emory oak acorn showed a synergistic pharmacological interaction that significantly reduced the viability of cancer cells such as MCF7 and HeLa
DOI: 10.17632/5c84d33vjh
title: Data for: Playbacks of Asian honey bee stop signals demonstrate referential inhibitory communication

description: Data set for the paper, "Playbacks of Asian honey bee stop signals demonstrate referential inhibitory communication"