cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16689879
title: Additional file 16 of Transcriptome analysis of heterogeneity in mouse model of metastatic breast cancer

description: Additional file 16. Complete list of enriched GO-terms and upregulated genes from CD44high vs. CD44low lung-derived samples (Fig 3C).
DOI: 10.6084/m9.figshare.16689879.v1
title: Additional file 16 of Transcriptome analysis of heterogeneity in mouse model of metastatic breast cancer

description: Additional file 16. Complete list of enriched GO-terms and upregulated genes from CD44high vs. CD44low lung-derived samples (Fig 3C).
DOI: 10.6084/m9.figshare.16689882
title: Additional file 17 of Transcriptome analysis of heterogeneity in mouse model of metastatic breast cancer

description: Additional file 17. Complete list of enriched GO-terms and upregulated genes from CD44low vs. CD44high lung-derived samples (Fig 3C).
DOI: 10.6084/m9.figshare.16689882.v1
title: Additional file 17 of Transcriptome analysis of heterogeneity in mouse model of metastatic breast cancer

description: Additional file 17. Complete list of enriched GO-terms and upregulated genes from CD44low vs. CD44high lung-derived samples (Fig 3C).
DOI: 10.6084/m9.figshare.16689888
title: Additional file 2 of Transcriptome analysis of heterogeneity in mouse model of metastatic breast cancer

description: Additional file 2. Complete list of enriched GO-terms and genes from the enriched pathway analysis from Fig 1B.
DOI: 10.6084/m9.figshare.16689888.v1
title: Additional file 2 of Transcriptome analysis of heterogeneity in mouse model of metastatic breast cancer

description: Additional file 2. Complete list of enriched GO-terms and genes from the enriched pathway analysis from Fig 1B.
DOI: 10.6084/m9.figshare.16689891.v1
title: Additional file 3 of Transcriptome analysis of heterogeneity in mouse model of metastatic breast cancer

description: Additional file 3. Differential gene analysis comparing metastatic tissue-derived cell line (CD44high BM) against the MFP-derived cell line (primary tumor).
DOI: 10.6084/m9.figshare.16689894
title: Additional file 4 of Transcriptome analysis of heterogeneity in mouse model of metastatic breast cancer

description: Additional file 4. Differential gene analysis comparing metastatic tissue-derived cell line (CD44low BM) against the MFP-derived cell line (primary tumor).
DOI: 10.6084/m9.figshare.16689891
title: Additional file 3 of Transcriptome analysis of heterogeneity in mouse model of metastatic breast cancer

description: Additional file 3. Differential gene analysis comparing metastatic tissue-derived cell line (CD44high BM) against the MFP-derived cell line (primary tumor).
DOI: 10.6084/m9.figshare.16689894.v1
title: Additional file 4 of Transcriptome analysis of heterogeneity in mouse model of metastatic breast cancer

description: Additional file 4. Differential gene analysis comparing metastatic tissue-derived cell line (CD44low BM) against the MFP-derived cell line (primary tumor).
DOI: 10.6084/m9.figshare.16689897
title: Additional file 5 of Transcriptome analysis of heterogeneity in mouse model of metastatic breast cancer

description: Additional file 5. Differential gene analysis comparing metastatic tissue-derived cell line (CD44high lung) against the MFP-derived cell line (primary tumor).
DOI: 10.6084/m9.figshare.16689897.v1
title: Additional file 5 of Transcriptome analysis of heterogeneity in mouse model of metastatic breast cancer

description: Additional file 5. Differential gene analysis comparing metastatic tissue-derived cell line (CD44high lung) against the MFP-derived cell line (primary tumor).
DOI: 10.6084/m9.figshare.16689900
title: Additional file 6 of Transcriptome analysis of heterogeneity in mouse model of metastatic breast cancer

description: Additional file 6. Differential gene analysis comparing metastatic tissue-derived cell line (CD44low lung) against the MFP-derived cell line (primary tumor).
DOI: 10.6084/m9.figshare.16689900.v1
title: Additional file 6 of Transcriptome analysis of heterogeneity in mouse model of metastatic breast cancer

description: Additional file 6. Differential gene analysis comparing metastatic tissue-derived cell line (CD44low lung) against the MFP-derived cell line (primary tumor).
DOI: 10.6084/m9.figshare.16689906
title: Additional file 7 of Transcriptome analysis of heterogeneity in mouse model of metastatic breast cancer

description: Additional file 7. Differential gene analysis comparing metastatic tissue-derived cell line (CD44high LN) against the MFP-derived cell line (primary tumor).
DOI: 10.6084/m9.figshare.16689906.v1
title: Additional file 7 of Transcriptome analysis of heterogeneity in mouse model of metastatic breast cancer

description: Additional file 7. Differential gene analysis comparing metastatic tissue-derived cell line (CD44high LN) against the MFP-derived cell line (primary tumor).
DOI: 10.6084/m9.figshare.16689909
title: Additional file 8 of Transcriptome analysis of heterogeneity in mouse model of metastatic breast cancer

description: Additional file 8. Differential gene analysis comparing metastatic tissue-derived cell line (CD44low LN) against the MFP-derived cell line (primary tumor)
DOI: 10.6084/m9.figshare.16689912
title: Additional file 9 of Transcriptome analysis of heterogeneity in mouse model of metastatic breast cancer

description: Additional file 9. Differentially expressed gene analysis comparing CD44low and CD44high samples derived from bone marrow.
DOI: 10.6084/m9.figshare.16689909.v1
title: Additional file 8 of Transcriptome analysis of heterogeneity in mouse model of metastatic breast cancer

description: Additional file 8. Differential gene analysis comparing metastatic tissue-derived cell line (CD44low LN) against the MFP-derived cell line (primary tumor)
DOI: 10.6084/m9.figshare.16689912.v1
title: Additional file 9 of Transcriptome analysis of heterogeneity in mouse model of metastatic breast cancer

description: Additional file 9. Differentially expressed gene analysis comparing CD44low and CD44high samples derived from bone marrow.
DOI: 10.6084/m9.figshare.16689866
title: Additional file 10 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 9: Table S5. AB genome characteristics.
DOI: 10.6084/m9.figshare.16689866.v1
title: Additional file 10 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 9: Table S5. AB genome characteristics.
DOI: 10.6084/m9.figshare.16689869
title: Additional file 11 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 10: Table S6. Kaiju core species according to various read counts cut-off.
DOI: 10.6084/m9.figshare.16689869.v1
title: Additional file 11 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 10: Table S6. Kaiju core species according to various read counts cut-off.
DOI: 10.6084/m9.figshare.16689872.v1
title: Additional file 12 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 11: Table S7. dbRDA and PERMANOVA results.
DOI: 10.6084/m9.figshare.16689872
title: Additional file 12 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 11: Table S7. dbRDA and PERMANOVA results.
DOI: 10.6084/m9.figshare.16689875
title: Additional file 13 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 12: Table S8. (A) PERMANOVA and (B) Phylosymbiosis results both based on the microbial community composition that includes assembled and non-assembled taxa.
DOI: 10.6084/m9.figshare.16689875.v1
title: Additional file 13 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 12: Table S8. (A) PERMANOVA and (B) Phylosymbiosis results both based on the microbial community composition that includes assembled and non-assembled taxa.
DOI: 10.6084/m9.figshare.16689878
title: Additional file 14 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 13: Table S9. Single-copy taxonomic marker genes for MIDAS analysis.
DOI: 10.6084/m9.figshare.16689878.v1
title: Additional file 14 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 13: Table S9. Single-copy taxonomic marker genes for MIDAS analysis.
DOI: 10.6084/m9.figshare.16689881
title: Additional file 15 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 14: Table S10. Spearman and SparCC correlations.
DOI: 10.6084/m9.figshare.16689881.v1
title: Additional file 15 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 14: Table S10. Spearman and SparCC correlations.
DOI: 10.6084/m9.figshare.16689884
title: Additional file 16 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 15: Table S11. Gene families involved in HGT using Metachip. The table shows the genes identified with Metachip, and 31 genes families that were also identified with an additional method.
DOI: 10.6084/m9.figshare.16689884.v1
title: Additional file 16 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 15: Table S11. Gene families involved in HGT using Metachip. The table shows the genes identified with Metachip, and 31 genes families that were also identified with an additional method.
DOI: 10.6084/m9.figshare.16689887
title: Additional file 17 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 16: Table S12. Presence/absence of certain metabolic pathways involved in the biosynthesis of biotin, cobalamin, thiamin and carotenoid, and nitrogen assimilation.
DOI: 10.6084/m9.figshare.16689887.v1
title: Additional file 17 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 16: Table S12. Presence/absence of certain metabolic pathways involved in the biosynthesis of biotin, cobalamin, thiamin and carotenoid, and nitrogen assimilation.
DOI: 10.6084/m9.figshare.16689890.v1
title: Additional file 18 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 17: Table S13. KEGG modules present in AB.
DOI: 10.6084/m9.figshare.16689890
title: Additional file 18 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 17: Table S13. KEGG modules present in AB.
DOI: 10.6084/m9.figshare.16689893
title: Additional file 19 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 18: Table S14. Metabolic exchange analysis. (A) SMETANA output from a modeled community of Microcystis genotype G01 (M007S1) and the five members of its microbiome in minimal media. (B) Pairwise SMETANA analysis of Microcystis and five members of its microbiome in complete media. (C)Negative control pairwise SMETANA analysis of Microcystis and three non-associated bacteria in complete media.
DOI: 10.6084/m9.figshare.16689893.v1
title: Additional file 19 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 18: Table S14. Metabolic exchange analysis. (A) SMETANA output from a modeled community of Microcystis genotype G01 (M007S1) and the five members of its microbiome in minimal media. (B) Pairwise SMETANA analysis of Microcystis and five members of its microbiome in complete media. (C)Negative control pairwise SMETANA analysis of Microcystis and three non-associated bacteria in complete media.
DOI: 10.6084/m9.figshare.16689902
title: Additional file 21 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 20: Table S16. Read quality scores for the Microcystis colonies and the environmental metagenomes. Quality scores for the colonies (A and B) and for the lake metagenomes (C and D).
DOI: 10.6084/m9.figshare.16689905
title: Additional file 22 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 21: Table S17. ANIm between AB genomes.
DOI: 10.6084/m9.figshare.16689905.v1
title: Additional file 22 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 21: Table S17. ANIm between AB genomes.
DOI: 10.6084/m9.figshare.16689902.v1
title: Additional file 21 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 20: Table S16. Read quality scores for the Microcystis colonies and the environmental metagenomes. Quality scores for the colonies (A and B) and for the lake metagenomes (C and D).
DOI: 10.6084/m9.figshare.16689911
title: Additional file 23 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 22: Table S18. Taxonomical classification of contigs in uncomplete MAGs based on CAT analysis.
DOI: 10.6084/m9.figshare.16689911.v1
title: Additional file 23 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 22: Table S18. Taxonomical classification of contigs in uncomplete MAGs based on CAT analysis.
DOI: 10.6084/m9.figshare.16689914.v1
title: Additional file 24 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 23: Table S19. Reference genomes.
DOI: 10.6084/m9.figshare.16689914
title: Additional file 24 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 23: Table S19. Reference genomes.
DOI: 10.6084/m9.figshare.16689920.v1
title: Additional file 3 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 2. Supplementary methods. dbRDA phylosymbiosis (R script).
DOI: 10.6084/m9.figshare.16689923
title: Additional file 4 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 3. Supplementary methods. Co-phylogeny (R script).
DOI: 10.6084/m9.figshare.16689920
title: Additional file 3 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 2. Supplementary methods. dbRDA phylosymbiosis (R script).
DOI: 10.6084/m9.figshare.16689923.v1
title: Additional file 4 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 3. Supplementary methods. Co-phylogeny (R script).
DOI: 10.6084/m9.figshare.16689929.v1
title: Additional file 6 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 5: Table S1. Microcystis genome characteristics.
DOI: 10.6084/m9.figshare.16689929
title: Additional file 6 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 5: Table S1. Microcystis genome characteristics.
DOI: 10.6084/m9.figshare.16689932
title: Additional file 7 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 6: Table S2. ANIm and ANIb values.
DOI: 10.6084/m9.figshare.16689932.v1
title: Additional file 7 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 6: Table S2. ANIm and ANIb values.
DOI: 10.6084/m9.figshare.16689935
title: Additional file 8 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 7: Table S3. Metadata for metagenomic samples from Lake Champlain and Pampulha Reservoir.
DOI: 10.6084/m9.figshare.16689935.v1
title: Additional file 8 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 7: Table S3. Metadata for metagenomic samples from Lake Champlain and Pampulha Reservoir.
DOI: 10.6084/m9.figshare.16689938.v1
title: Additional file 9 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 8: Table S4. SNVs within and between Microcystis colonies. SNVs accumulated in 19 Microcystis laboratory cultures after ~6 years of culture are also included.
DOI: 10.6084/m9.figshare.16689938
title: Additional file 9 of Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria

description: Additional file 8: Table S4. SNVs within and between Microcystis colonies. SNVs accumulated in 19 Microcystis laboratory cultures after ~6 years of culture are also included.
DOI: 10.6084/m9.figshare.16689936.v1
title: Additional file 3 of Analyzing the demographic, spatial, and temporal factors influencing social contact patterns in U.S. and implications for infectious disease spread

description: Additional file 3. Dataset 1. Excel file containing additional information (95% confidence intervals, standard deviation, and coefficient of variation) for age pattern figures.
DOI: 10.6084/m9.figshare.16689939
title: Additional file 4 of Analyzing the demographic, spatial, and temporal factors influencing social contact patterns in U.S. and implications for infectious disease spread

description: Additional file 4. Dataset 2. Excel file containing additional information (95% confidence intervals, standard deviation) for age-structured contact matrices figures.
DOI: 10.6084/m9.figshare.16689936
title: Additional file 3 of Analyzing the demographic, spatial, and temporal factors influencing social contact patterns in U.S. and implications for infectious disease spread

description: Additional file 3. Dataset 1. Excel file containing additional information (95% confidence intervals, standard deviation, and coefficient of variation) for age pattern figures.
DOI: 10.6084/m9.figshare.16689939.v1
title: Additional file 4 of Analyzing the demographic, spatial, and temporal factors influencing social contact patterns in U.S. and implications for infectious disease spread

description: Additional file 4. Dataset 2. Excel file containing additional information (95% confidence intervals, standard deviation) for age-structured contact matrices figures.
DOI: 10.6084/m9.figshare.16689950.v1
title: Additional file 1 of Feline thymidine kinase 1: molecular characterization and evaluation of its serum form as a diagnostic biomarker

description: Additional file 1.
DOI: 10.6084/m9.figshare.16689950
title: Additional file 1 of Feline thymidine kinase 1: molecular characterization and evaluation of its serum form as a diagnostic biomarker

description: Additional file 1.
DOI: 10.6084/m9.figshare.16689562
title: Ministerial Power data for Papua New Guinea

description: This data set is from Papua New Guinea.<br><br>The data set is a simple data set linking electoral outcomes for incumbent MPs to the ministerial roles they held in the term prior to the election in question.
DOI: 10.5281/zenodo.5533126
title: Modeling the economic and environmental impacts of land scarcity under deep uncertainty

description: Code and input files for the Dolan et al. 2021 paper "Modeling the economic and environmental impacts of land scarcity under deep uncertainty"
DOI: 10.25919/z3j0-gj97
title: Parkes observations for project P1068 semester 2021APRS_22

description: In the fast-moving world of Fast Radio Bursts (FRBs), the critical question of what fraction of FRBs emit repeat bursts remains unanswered. Of order 20 repeating FRBs are now known, and their spectro-temporal properties hint at differences with apparently non-repeating bursts - the poor statistics preclude a definitive diagnosis. FRB 180301 is a promising source for further study for multiple reasons: it is an active repeater similar to the FRB 121102 and the most active FRB source visible to Parkes, and it shows diverse polarization properties across the repeat bursts. We have detected multiple repeat bursts from this source in our campaign last semester. The signal-to-noise ratio (S/N) of these detections are not sufficiently significant to measure their spectro-polarimetric properties. We request Parkes observations with the UWL receiver to continue the monitoring of this FRB source in order to characterize the broadband emission properties. Some of the key goals for these future observations are: to constrain the repetition rate, identify any variation of pulse characteristics over time, measure the polarimetric properties and provide insight into the emission mechanisms. The diverse polarization angle swings in the FAST detections and significant circular polarization in the original Parkes detection indicate the progenitor is embedded in an extreme magneto-ionic environment with complex field structure that has not been seen before. Understanding these diverse polarization properties from this source could be the key to distinguish repeater sources from the apparent non-repeaters ones.
DOI: 10.6084/m9.figshare.16684870
title: G4RP-qPCR raw data for VEGFA_NRAS_MALAT.xlsx

description: G4RP qPCR dataset in MCF7 breast cancer cells either treated with vehicle (non-treated), BRACO-19 or RHPS4. Genes of interest, VEGFA, NRAS and MALAT1, were quantified. This dataset also include the formula for normalization against he control
DOI: 10.6084/m9.figshare.16684870.v1
title: G4RP-qPCR raw data for VEGFA_NRAS_MALAT.xlsx

description: G4RP qPCR dataset in MCF7 breast cancer cells either treated with vehicle (non-treated), BRACO-19 or RHPS4. Genes of interest, VEGFA, NRAS and MALAT1, were quantified. This dataset also include the formula for normalization against he control