cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.60712/si-id371054.2
title: StrainInfo SI-ID 371054.2

description: StrainInfo dataset 371054 about a strain of Hymenobacter elongatus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id371055.2
title: StrainInfo SI-ID 371055.2

description: StrainInfo dataset 371055 about a strain of Hymenobacter algoricola. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id371056.2
title: StrainInfo SI-ID 371056.2

description: StrainInfo dataset 371056 about a strain of Hymenobacter antarcticus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id37107.2
title: StrainInfo SI-ID 37107.2

description: StrainInfo dataset 37107 about a strain of Streptomyces globisporus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.5281/zenodo.11961219
title: Global bare soil, photosynthetic and non-photosynthetic vegetation fraction annual at 500 m resolution

description: Annual mean and std for (1) bare soil fraction, and (2) photosynthetic and (3) non-photosynthetic vegetation annual at 500 m resolution for 2001–2023. The dataset was obtained from: https://thredds.nci.org.au/thredds/catalog/tc43/modis-fc/v310/tiles/monthly/cover/catalog.html (monthly values; 320GB in total). Mean and std was derived using terra package in R using functions "mean" and "std" from 12 monthly values; missing values were ignored during derivation.

Note: the Global Vegetation Fractional Cover Product (GVFCP) v3.1 (Hill and Guerschman, 2022) is derived from spectral unmixing of all seven optical bands from the 500 m MODIS (Moderate Resolution Imaging Spectroradiometer) Nadir BRDF (Bidirectional Reflectance Distribution Function)-adjusted Reflectance Product (NBAR, MCD43A4 Collection 6). A similar dataset has been produced by Sun et al., (2024), covering period 2001–2022. Below is the sample code explaining how were the mean, max and std derived.

## Download from: https://thredds.nci.org.au/thredds/catalog/tc43/modis-fc/v310/tiles/monthly/cover/catalog.html
## wget -e robots=off -nH --cut-dirs 4 -nc -r -l5 -A '*.nc' -R 'catalog*' -I /thredds/fileServer/,/thredds/catalog/ 'https://thredds.nci.org.au/thredds/catalog/tc43/modis-fc/v310/tiles/monthly/cover/catalog.html'
## 6857 tiles
library(terra)
modis.tiles = list.files("/mnt/lacus/raw/modis-fc/v310/tiles/monthly/cover/", pattern = glob2rx("*.nc"))
mod.lst = unique(sapply(modis.tiles, function(i){strsplit(i, "\\.")[[1]][4]}))
str(mod.lst)
## 272

## aggregate per year per tile
nc_tile <- function(i, year, dir.x="/mnt/lacus/raw/modis-fc/v310/tiles/monthly/cover/", mc.cores=parallel::detectCores()){
   require(terra)
   if(year == 2023 | year == 2024){
      in.filename = paste0(dir.x, "FC_Monthly_Medoid.v310.MCD43A4.", i, ".", year, ".061.nc")
   } else {
      in.filename = paste0(dir.x, "FC_Monthly_Medoid.v310.MCD43A4.", i, ".", year, ".006.nc")
   }
   bs.filenames = paste0("./modis-fc/bs_", c("mean", "max", "std"), "/FC_Monthly_Medoid.v310.MCD43A4.", i, ".", year, ".006.tif")
   dg = terra::rast(in.filename)
   if(any(!file.exists(bs.filenames))){
      bs = dg["bare_soil"] ## 12 months
      dg.m = app(bs, fun=mean, na.rm=TRUE, 
                 filename=bs.filenames[1], 
                 wopt=list(gdal=c("COMPRESS=DEFLATE"), datatype='INT1S'), 
                 overwrite=TRUE, cores = mc.cores)
      dg.x = app(bs, fun=max, na.rm=TRUE, 
                 filename=bs.filenames[2], 
                 wopt=list(gdal=c("COMPRESS=DEFLATE"), datatype='INT1S'), 
                 overwrite=TRUE, cores = mc.cores)
      dg.s = app(bs, fun=sd, na.rm=TRUE, 
                 filename=bs.filenames[3], 
                 wopt=list(gdal=c("COMPRESS=DEFLATE"), datatype='INT1S'), 
                 overwrite=TRUE, cores = mc.cores)
   }
}
## run in parallel
for(year in 2001:2024){
   x = parallel::mclapply(sample(mod.lst), function(i){try( nc_tile(i, year=year, mc.cores = 2) )}, mc.cores = 40)
   tmpFiles(remove=TRUE)
}
DOI: 10.5281/zenodo.12071317
title: Global bare soil, photosynthetic and non-photosynthetic vegetation fraction annual at 500 m resolution

description: Annual mean and std for (1) bare soil fraction, and (2) photosynthetic and (3) non-photosynthetic vegetation annual at 500 m resolution for 2001–2023. The dataset was obtained from: https://thredds.nci.org.au/thredds/catalog/tc43/modis-fc/v310/tiles/monthly/cover/catalog.html (monthly values; 320GB in total). Mean and std was derived using terra package in R using functions "mean" and "std" from 12 monthly values; missing values were ignored during derivation.

Note: the Global Vegetation Fractional Cover Product (GVFCP) v3.1 (Hill and Guerschman, 2022) is derived from spectral unmixing of all seven optical bands from the 500 m MODIS (Moderate Resolution Imaging Spectroradiometer) Nadir BRDF (Bidirectional Reflectance Distribution Function)-adjusted Reflectance Product (NBAR, MCD43A4 Collection 6). A similar dataset has been produced by Sun et al., (2024), covering period 2001–2022. Below is the sample code explaining how were the mean, max and std derived.

## Download from: https://thredds.nci.org.au/thredds/catalog/tc43/modis-fc/v310/tiles/monthly/cover/catalog.html
## wget -e robots=off -nH --cut-dirs 4 -nc -r -l5 -A '*.nc' -R 'catalog*' -I /thredds/fileServer/,/thredds/catalog/ 'https://thredds.nci.org.au/thredds/catalog/tc43/modis-fc/v310/tiles/monthly/cover/catalog.html'
## 6857 tiles
library(terra)
modis.tiles = list.files("/mnt/lacus/raw/modis-fc/v310/tiles/monthly/cover/", pattern = glob2rx("*.nc"))
mod.lst = unique(sapply(modis.tiles, function(i){strsplit(i, "\\.")[[1]][4]}))
str(mod.lst)
## 272

## aggregate per year per tile
nc_tile <- function(i, year, dir.x="/mnt/lacus/raw/modis-fc/v310/tiles/monthly/cover/", mc.cores=parallel::detectCores()){
   require(terra)
   if(year == 2023 | year == 2024){
      in.filename = paste0(dir.x, "FC_Monthly_Medoid.v310.MCD43A4.", i, ".", year, ".061.nc")
   } else {
      in.filename = paste0(dir.x, "FC_Monthly_Medoid.v310.MCD43A4.", i, ".", year, ".006.nc")
   }
   bs.filenames = paste0("./modis-fc/bs_", c("mean", "max", "std"), "/FC_Monthly_Medoid.v310.MCD43A4.", i, ".", year, ".006.tif")
   dg = terra::rast(in.filename)
   if(any(!file.exists(bs.filenames))){
      bs = dg["bare_soil"] ## 12 months
      dg.m = app(bs, fun=mean, na.rm=TRUE, 
                 filename=bs.filenames[1], 
                 wopt=list(gdal=c("COMPRESS=DEFLATE"), datatype='INT1S'), 
                 overwrite=TRUE, cores = mc.cores)
      dg.x = app(bs, fun=max, na.rm=TRUE, 
                 filename=bs.filenames[2], 
                 wopt=list(gdal=c("COMPRESS=DEFLATE"), datatype='INT1S'), 
                 overwrite=TRUE, cores = mc.cores)
      dg.s = app(bs, fun=sd, na.rm=TRUE, 
                 filename=bs.filenames[3], 
                 wopt=list(gdal=c("COMPRESS=DEFLATE"), datatype='INT1S'), 
                 overwrite=TRUE, cores = mc.cores)
   }
}
## run in parallel
for(year in 2001:2024){
   x = parallel::mclapply(sample(mod.lst), function(i){try( nc_tile(i, year=year, mc.cores = 2) )}, mc.cores = 40)
   tmpFiles(remove=TRUE)
}
DOI: 10.60712/si-id37108.2
title: StrainInfo SI-ID 37108.2

description: StrainInfo dataset 37108 about a strain of Streptomyces violaceoruber. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id371081.2
title: StrainInfo SI-ID 371081.2

description: StrainInfo dataset 371081 about a strain of Bosea lupini. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id371082.2
title: StrainInfo SI-ID 371082.2

description: StrainInfo dataset 371082 about a strain of Bosea robiniae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id371088.2
title: StrainInfo SI-ID 371088.2

description: StrainInfo dataset 371088 about a strain of Bosea lathyri. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id371092.2
title: StrainInfo SI-ID 371092.2

description: StrainInfo dataset 371092 about a strain of Tardiphaga robiniae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.48597/u7ya-3uwc
title: Measurement of Sulphur_dioxide at Starina

description: Measurement of Sulphur_dioxide at Starina
DOI: 10.60712/si-id371104.2
title: StrainInfo SI-ID 371104.2

description: StrainInfo dataset 371104 about a strain of Riemerella columbipharyngis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id371117.2
title: StrainInfo SI-ID 371117.2

description: StrainInfo dataset 371117 about a strain of Marisediminicola antarctica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id371118.2
title: StrainInfo SI-ID 371118.2

description: StrainInfo dataset 371118 about a strain of Microbacterium lindanitolerans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id371119.2
title: StrainInfo SI-ID 371119.2

description: StrainInfo dataset 371119 about a strain of Phytohabitans suffuscus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id371120.2
title: StrainInfo SI-ID 371120.2

description: StrainInfo dataset 371120 about a strain of Sphingopyxis bauzanensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id371121.2
title: StrainInfo SI-ID 371121.2

description: StrainInfo dataset 371121 about a strain of Siphonobacter aquaeclarae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/gglngk
title: Marine and Coastal Management - Linefish Dataset (First Semester of 2003) (AfrOBIS)

description: Marine and Coastal Management (MCM) is one of four branches of the Department of Environmental Affairs and Tourism. It is the regulatory authority responsible for managing all marine and coastal activities. The linefish dataset is collected around the South African Coast, and currently contains 2759599 records of 63 families. For ease of extraction the dataset has been divided into 42 smaller datasets - one per semester for each year from 1985 to 2005.
DOI: 10.48597/rspz-pd8e
title: Measurement of Inorganics in air and particle phase at Starina

description: Measurement of Inorganics in air and particle phase at Starina
DOI: 10.60712/si-id371122.2
title: StrainInfo SI-ID 371122.2

description: StrainInfo dataset 371122 about a strain of Albibacterium bauzanense. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id371126.2
title: StrainInfo SI-ID 371126.2

description: StrainInfo dataset 371126 about a strain of Paraburkholderia diazotrophica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.48597/7pcv-v3kf
title: Measurement of Ammonia at Starina

description: Measurement of Ammonia at Starina
DOI: 10.60712/si-id371127.2
title: StrainInfo SI-ID 371127.2

description: StrainInfo dataset 371127 about a strain of Acinetobacter rudis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.5281/zenodo.10776786
title: ChemoDOTS web server data files

description: This archive contains files related to the ChemoDOTS web server (https://chemodots.marseille.inserm.fr/)

ChemoDOTS_list_of_chemical_functions.xlsx: List of chemical functions recognized by the ChemoDOTS web server and corresponding SMILES.

ChemoDOTS_list_of_chemical_reactions.xlsx: List of chemical reactions rimplemented in the ChemoDOTS web server and corresponding SMARTS.

ChemoDOTS_list_of_chemical_reactions_2024.pdf: List of chemical reactions implemented in the ChemoDOTS web server

ChemoDOTS_list_of_chemical_reactions_by-functions_2024.pdf: List of chemical reactions implemented in the ChemoDOTS web server sorted by chemical functions.

ChemoDOTS_MolPort_BBs.smi: Building Blocks from MolPort used in ChemoDOTS (version 2024-03-01)

ChemoDOTS_Enamine_BBs.smi: Building Blocks from Enamine used in ChemoDOTS (version 2024-03-01)
DOI: 10.5281/zenodo.12093823
title: ChemoDOTS web server data files

description: This archive contains files related to the ChemoDOTS web server (https://chemodots.marseille.inserm.fr/)

ChemoDOTS_list_of_chemical_functions.xlsx: List of chemical functions recognized by the ChemoDOTS web server and corresponding SMILES.

ChemoDOTS_list_of_chemical_reactions.xlsx: List of chemical reactions rimplemented in the ChemoDOTS web server and corresponding SMARTS.

ChemoDOTS_list_of_chemical_reactions_2024.pdf: List of chemical reactions implemented in the ChemoDOTS web server

ChemoDOTS_list_of_chemical_reactions_by-functions_2024.pdf: List of chemical reactions implemented in the ChemoDOTS web server sorted by chemical functions.

ChemoDOTS_MolPort_BBs.smi: Building Blocks from MolPort used in ChemoDOTS (version 2024-03-01)

ChemoDOTS_Enamine_BBs.smi: Building Blocks from Enamine used in ChemoDOTS (version 2024-03-01)
DOI: 10.60712/si-id371135.2
title: StrainInfo SI-ID 371135.2

description: StrainInfo dataset 371135 about a strain of Trinickia symbiotica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id37114.2
title: StrainInfo SI-ID 37114.2

description: StrainInfo dataset 37114 about a strain of Streptomyces helvaticus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id371152.2
title: StrainInfo SI-ID 371152.2

description: StrainInfo dataset 371152 about a strain of Rosenbergiella nectarea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id371184.2
title: StrainInfo SI-ID 371184.2

description: StrainInfo dataset 371184 about a strain of Halarchaeum acidiphilum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id371195.2
title: StrainInfo SI-ID 371195.2

description: StrainInfo dataset 371195 about a strain of Natronoarchaeum mannanilyticum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id371197.2
title: StrainInfo SI-ID 371197.2

description: StrainInfo dataset 371197 about a strain of Paenibacillus camelliae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.48597/8n5g-9aas
title: Measurement of Sulphur_dioxide at Starina

description: Measurement of Sulphur_dioxide at Starina
DOI: 10.60712/si-id371222.2
title: StrainInfo SI-ID 371222.2

description: StrainInfo dataset 371222 about a strain of Euzebyella saccharophila. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id371225.2
title: StrainInfo SI-ID 371225.2

description: StrainInfo dataset 371225 about a strain of Pseudomonas arsenicoxydans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id371245.2
title: StrainInfo SI-ID 371245.2

description: StrainInfo dataset 371245 about a strain of Malassezia cuniculi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id37131.2
title: StrainInfo SI-ID 37131.2

description: StrainInfo dataset 37131 about a strain of Streptomyces. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id37133.2
title: StrainInfo SI-ID 37133.2

description: StrainInfo dataset 37133 about a strain of Mycoplasmopsis bovigenitalium. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id371362.2
title: StrainInfo SI-ID 371362.2

description: StrainInfo dataset 371362 about a strain of Bartonella australis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.3886/e161342
title: Data and Code for Boomtowns: Local Shocks and Inequality in 1920s California

description: This paper provides the first
stylized facts on the growth of real estate values and inequality within and
across cities during the Roaring Twenties. We link the high variation in the
average increase in property values across California cities during the 1920s
to labor market exposure to 4 booms: automobiles, oil, stocks, and electricity.
Electricity had the largest positive effect on property values and in reducing
inequality, because it increased manufacturing wages. The stock-market boom benefited
mostly those working in that sector, while the gains from oil were realized
more generally across sectors within that local area. 

<br><br><br><br><br>
DOI: 10.3886/e161342v1
title: Data and Code for Boomtowns: Local Shocks and Inequality in 1920s California

description: This paper provides the first
stylized facts on the growth of real estate values and inequality within and
across cities during the Roaring Twenties. We link the high variation in the
average increase in property values across California cities during the 1920s
to labor market exposure to 4 booms: automobiles, oil, stocks, and electricity.
Electricity had the largest positive effect on property values and in reducing
inequality, because it increased manufacturing wages. The stock-market boom benefited
mostly those working in that sector, while the gains from oil were realized
more generally across sectors within that local area. 

<br><br><br><br><br>
DOI: 10.48597/g9tp-zc92
title: Measurement of Sulphur_dioxide at Starina

description: Measurement of Sulphur_dioxide at Starina
DOI: 10.60712/si-id37146.2
title: StrainInfo SI-ID 37146.2

description: StrainInfo dataset 37146 about a strain of Streptomyces coerulescens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id371485.2
title: StrainInfo SI-ID 371485.2

description: StrainInfo dataset 371485 about a strain of Limnobacter litoralis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id371486.2
title: StrainInfo SI-ID 371486.2

description: StrainInfo dataset 371486 about a strain of Limnohabitans parvus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id371487.2
title: StrainInfo SI-ID 371487.2

description: StrainInfo dataset 371487 about a strain of Limnohabitans planktonicus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id371496.2
title: StrainInfo SI-ID 371496.2

description: StrainInfo dataset 371496 about a strain of Neisseria shayeganii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id371500.2
title: StrainInfo SI-ID 371500.2

description: StrainInfo dataset 371500 about a strain of Neisseria wadsworthii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.