cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/xtw693g279
title: LINF_090014200

description: Dynein heavy chain; Leishmania infantum (strain JPCM5)
DOI: 10.3535/dg2-rpd-qwp
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y1q-3p0-ezl
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gty-mw4-h64
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mvp-x13-brd
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/4d96x29xkp
title: MD_MAITcellLigands_MDvi_2020

description: The broadly designed study of molecular dynamics (MD) of receptor complexes of natural MAIT cell ligands, their ethinylated or fluorescence-labelled derivatives generated data that give insights beyond analysis of interactions observed in crystal structures of ternary ligand/MR1/TCR complexes. The data permit a MD weighted appreciation of the crystallographically observed interactions, thereby supporting drug design of MAIT cell ligand. They were notably generated from models of both, binary and ternary complexes of MAIT cell ligands to give insights into the formation of the ternary complexes. Analysis of torsional angles evinces induced-fit of the ligand in binary MR1 complexes upon formation of the corresponding ternary complexes. Radial distribution functions of water around the ethinylated ligands in binary MR1 complexes show that fluorescence labeling by copper(I)-catalyzed azide-alkyne cycloaddition can occur on covalently bound ligand. They also provide a first step to the risk assessment of photon-induced electron transfer (PET) in fluorophore-labelled ligand/MR1 complexes. The dataset contains: * Simulation Interactions Diagram Reports (pdf) and statistics of non-covalent interaction counts (xlsx) of molecular dynamics simulations of natural MAIT cell ligands and their ethinylated or fluorophore-reacted analogs in ternary and binary MR1/TCR and MR1 complexes, respectively. * Raw data of the molecular dynamics simulations: Desmond input and output files as generated by the implementation in Maestro molecular modelling package commercialized by Schrödinger Inc.; compressed; tar archives; The trajectory files found in the directories [MDsimulation_name]_trj have to be decompressed prior to visualization. The 4 simulations of the binary and ternary complexes of 5OERU and 5OPRU are found in archive_natural_ligands_5OERU.tar and archive_natural_ligands_5OPRU.tar. The 4 simulations of the ternary complexes of the R and S stereoisomers of their ethinylated analogues are contained in archive_ethinylated_ligands_SSRR_ternary.tar and archive_ethinylated_ligands_SSRS_ternary.tar while the simulations of the corresponding binary complexes are in archive_ethinylated_ligands_binary.tar. The 4 simulations of the binary complexes of the two stereoisomers of the fluorophore-reacted products are accessible in archive_fluorescent_ligands.tar. Links to other parts of the dataset: https://data.mendeley.com/drafts/txms2vk6jb http://dx.doi.org/10.17632/txms2vk6jb.1 (MD_MAITcellLigands_i_2020) https://data.mendeley.com/drafts/wwxnsj66ks http://dx.doi.org/10.17632/wwxnsj66ks.1 (MD_MAITcellLigands_ii_2020) https://data.mendeley.com/drafts/d9byds5hs6 http://dx.doi.org/10.17632/d9byds5hs6.1 (MD_MAITcellLigands_iii_2020) https://data.mendeley.com/drafts/kbvs2cdyjg http://dx.doi.org/10.17632/kbvs2cdyjg.1 (MD_MAITcellLigands_iv_2020) https://data.mendeley.com/drafts/tp62zb6rg4 http://dx.doi.org/10.17632/tp62zb6rg4.1 (MD_MAITcellLigands_v_2020)
DOI: 10.17632/bhg782hfjc
title: Supplementary data for off-axis plume contributes to iron isotope heterogeneity in the South Mid-Atlantic Ridge basalts

description: Supplementary data for off-axis plume contributes to iron isotope heterogeneity in the South Mid-Atlantic Ridge basalts
DOI: 10.3535/2jl-n9a-fqj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/56h-et5-6d7
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wnq-a2g-1td
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/p9zw6b735c
title: Determination of momentum expectation values for polyatomic molecules

description: Abstract The MOEXVA program implements the recent formulation for the evaluation of momentum expectation values of diatomic molecules (J.M. Garcia de la Vega et al., J. Math. Chem. 21 (1993) 211), adapting this formulation to the general problem of polyatomic molecules. The program uses as input the molecular orbital output of any Hartree-Fock or Density-Functional-Theory molecular calculation for Cartesian or spherical Gaussian functions. the program performs an accurate determination of the orbital ... Title of program: MOEXVA Catalogue Id: ADHJ_v1_0 Nature of problem Determination of the powers of momentum expectation values for polyatomic molecules. Versions of this program held in the CPC repository in Mendeley Data ADHJ_v1_0; MOEXVA; 10.1016/S0010-4655(97)00134-3 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.3535/01z-vew-73c
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0m9-w23-4el
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/p27-zbx-t9s
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.878253_d64
title: relative_humidity_pct_1cm_soil_75_shade.zip

description: Relative humidity (%) 1 cm above the ground assuming a soil substrate and 75% shade from vegetation. Each netCDF file contains 24 layers of global extent, one for each hour of the day (starting at 0:00 hrs) for a given month of the year, at ~15km resolution.
 
 
Fileset Description:
The microclim dataset provides microclimate estimates of conditions above and below ground for each hour of the day for the middle day of each month based on a long-term average climatology. Details of this dataset are presented in [Kearney et al. 2014].
The dataset comprises a set of NetCDF files with one file per variable per month, each file comprising 24 layers (one for each hour of the day from 0:00 hrs to 23:00 hrs, so layer 13 is 12:00 midday) for the globe (852 rows, 2159 columns, latitudinal extents -58.57 to 83.43 degrees, longitudinal extents -180.00 to 180.00 degrees). For the naming convention, mon is month of the year (1 to 12, where 1 = Jan, 12 = Dec), shd is shade level in % (0, 25, 50, 75, 90, 100), and sub is substrate (soil, rock, sand).
To facilitate downloading the data, the NetCDF files are grouped into compressed (zipped) files, one per variable per shade and substrate type, each comprising all monthly values and, for the substrate temperatures, all depths. Note that not all variables are shade or substrate specific, specifically zenith angle, wind speeds, solar radiation, and 120 cm air temperature and relative humidity.
DOI: 10.6084/m9.figshare.9929054.v2
title: Agricultural intensification drives the evolution of host specialism in the ecological generalist bacterium Campylobacter jejuni

description: Modern agriculture has dramatically changed the distribution of animal species on earth. Changes to host ecology have a major impact on the microbiota, potentially increasing the risk of zoonotic pathogens being transmitted to humans, but the impact of intensive livestock production on host-associated bacteria has rarely been studied. Here we use large isolate collections and comparative genomics techniques, linked to phenotype studies, to understand the time-scale and genomic adaptations that promote proliferation of the most common food-born bacterial pathogen (<i>C. jejuni</i>) in the most extensively farmed agricultural mammal (cattle). Our findings reveal the emergence of cattle specialist <i>C. jejuni </i>lineages from a background of host generalist strains that coincided with the dramatic rise in cattle numbers in the 20<sup>th</sup> century. Cattle adaptation was facilitated by horizontal gene transfer and significant gene gain and loss, related to differences in host diet, anatomy and histology, leading to the proliferation of globally disseminated cattle specialists of major public health importance. This work highlights how genomic plasticity can allow important zoonotic pathogens to exploit altered niches in the face of anthropogenic change and provides information for mitigating some of the risks posed by modern agricultural systems.
DOI: 10.3535/1js-5w3-hg7
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/drc-w1l-nyb
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7bb-6g4-4np
title: Crossopterygii

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7cc-43w-7j0
title: Crossopterygii

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/j19-2vl-r06
title: Crossopterygii

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25246198.v1
title: Noh_rawdata_v20240214.xlsx

description: This dataset contains raw data used for a paper published at Journal of Geophysical Research – Biogeosciences, titled “Reconciling top-down and bottom-up estimates of ecosystem respiration in a mature eucalypt forest”. The paper was co-authored by Nam Jin Noh, Alexandre A. Renchon, Jürgen Knauer, Vanessa Haverd, Jinquan Li, Anne Griebel, Craig V.M. Barton, Jinyan Yang, Debjani Sihi, Stefan K. Arndt, Eric A. Davidson, Mark G. Tjoelker, and Elise Pendall.This study investigated seasonal patterns in field measurements, flux tower observations, and model-based components of ecosystem respiration and compared their responses to temperature changes in a dry eucalypt woodland near Sydney, Australia. This study highlights that concurrent, scaled chamber measurements validated flux tower observations to within 10%; implementing a substrate function into a land-surface model improved representation of heterotrophic respiration; and discrepancies between observations and simulations were largest for apparent temperature sensitivity of canopy and root respiration. Inconsistencies in the apparent (emergent) Q10 of Rroot, Rcanopy and Rstem between field measurements and modeled CABLE-POP outputs indicated a need for improving these components. By comparing component respiration rates between observations and model estimates, this study provides mechanistic insights that are relevant to model development.
DOI: 10.3535/cmf-ar7-3lv
title: Crossopterygii

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/k7w-3ne-qn6
title: Crossopterygii

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/khf-a5z-ffq
title: Crossopterygii

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/9es-2sr-frf
title: Crossopterygii

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hxy-314-p1f
title: Crossopterygii

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/nrm6jgyg4b
title: LINF_090017600

description: CDC50-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.3535/6jy-h64-yds
title: Sarcopterygii

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21130729.v1
title: query-validation-2023-internal

description: internal
DOI: 10.6084/m9.figshare.28553657.v1
title: In vitro data

description: Calcium mobilisation and intra-cellular cyclic AMP
DOI: 10.17608/k6.auckland.4529831.v1
title: taup seismic wave arrival time predictions

description: jupyter notebook that reads waveforms, and event info to make P- and S-wave arrival time predictions based on a spherically symmetric earth. The code is taup, wrapped in obspy.
DOI: 10.3535/2yw-x3q-xxb
title: Protitanichthys

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hpl-0br-gfr
title: Protitanichthys

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/sh55g2j48n
title: Supplementary Data Tables for "Strain partitioning in a flattening shear zone: re-evaluation of a Cycladic-style detachment" (Tectonics, 2024)

description: Contains all data tables, including mineral chemistry data and complete 40Ar/39Ar and 87Rb/87Sr geochronology data, for the article "Strain partitioning in a flattening shear zone: re-evaluation of a Cycladic-style detachment" in Wiley-AGU Tectonics.
DOI: 10.3535/aer-h1m-t41
title: Protitanichthys

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jsb-gbw-7rx
title: Protitanichthys

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sap-wl4-dpq
title: Protitanichthys

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/6gt7rv3k6x
title: ARTHUR SCHOPENHAUER’S CONCEPT OF SUFFERING IN RELATION TO CHRISTIANITY AND DISCIPLESHIP

description: This study examined the relationship between Arthur Schopenhauer’s notion of suffering, and Christian concept of suffering and discipleship. The researchers provided the reader a better connection of suffering with the idea of discipleship and Schopenhauer’s concept of suffering through his book The World as Will and Representation (1818/1819, revised 1844), for it presented a metaphysical framework where suffering is integral to existence. His philosophy centers on the dichotomy of the "Will" and the "Representation," which he sees as two aspects of the same reality. Therefore, discussions specifically revolved around the suffering which was analyzed and applied to the context of following Jesus as the challenge to every Christian.
DOI: 10.3535/w67-ax0-jvt
title: Protitanichthys

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.4121/19580806.v2
title: AmsterTime: A Visual Place Recognition Benchmark Dataset for Severe Domain Shift

description: <strong>AmsterTime</strong> dataset offers a collection of 2,500 well-curated images matching the same scene from a street view matched to historical archival image data from Amsterdam city. The image pairs capture the same place with different cameras, viewpoints, and appearances. Unlike existing benchmark datasets, AmsterTime is directly crowdsourced in a GIS navigation platform (Mapillary). In turn, all the matching pairs are verified by a human expert to verify the correct matches and evaluate the human competence in the Visual Place Recognition (VPR) task for further references. <br> The properties of the dataset are summarized as: 1200+ license-free images from the Amsterdam City Archive, representing urban places in the city of Amsterdam, captured in the past century by many photographers. All archival queries are matched with street view images from Mapillary. All matches are verified by architectural historians and Amsterdam inhabitants. Image pairs are archival and street views capturing the same place with different cameras, time lags, structural changes, occlusion, viewpoint, appearance, and illuminations. The dataset exhibits a domain shift between query and the gallery due to significant difference between scanned archival and street view images. Two sub-tasks are created on the dataset: <strong>Verification</strong> is a binary classification (auxiliary) task to detect a pair of archival and street-view images of the same place. The verification task for AmsterTime dataset has all of the crowdsourced image pairs as positive labeled, where the same number of negative samples are generated by randomly pairing archival and street-view images summing up to a total of 2,462 pairs in the verification task. <strong>Retrieval</strong> is the main task corresponding to VPR, in which a given query image is matched with a set of gallery images. For the retrieval task, AmsterTime dataset offers 1231 query images where the leave-one-out set serves as the gallery images for each query.
DOI: 10.3535/n2v-75z-h0f
title: Glyptolepis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/r8h-3z2-lya
title: Protitanichthys

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13675816.v1
title: Data and plotting routines for figures in "Advancing Artificial Neural Network Parameterisation for Atmospheric Turbulence using a Variational Multiscale Model"

description: This publication contains the data and plotting routines that underpin the manuscript "Advancing Artificial Neural Network Parameterisation for Atmospheric Turbulence using a Variational Multiscale Model", submitted to the Journal of Advances in Modeling Earth Systems. The data is organised in sub-directories per figure in the manuscript, with each folder containing the Python code and uncompressed simulation output data required to reproduce each figure.
DOI: 10.6084/m9.figshare.24941790.v2
title: Investigating the interaction between transboundary haze and planetary boundary layer in Singapore

description: This dataset includes LiDAR measurements of a recent transboundary haze episode (06-07 Oct, 2023) in Singapore. It includes the records from both Stare and VAD modes, which have been used in the analysis of PBL height, turbulence, and Low-level Jet in the study.
DOI: 10.17632/pb8zdxzkxx
title: Programs for the evaluation of overlap integrals with B functions

description: Abstract Programs for the evaluation of overlap integrals and some related integrals with certain exponential-type orbitals (ETO's), the B functions [E. Filter and E.O. Steinborn, Phys. Rev. A 18 (1978) 1] are presented. B functions possess a very simple Fourier transform which results in relatively compact general formulas for molecular integrals derivable using the Fourier transform method. In addition, molecular integrals for the more common Slater-type orbitals (STO's) and other ETO's can be writt... Title of program: S_INT Catalogue Id: ACJU_v1_0 Nature of problem Overlap integrals and matrix elements of the kinetic energy operator have to be computed in ab initio and semi-empirical quantum chemical calculations using any basis set. A basis set of B functions offers the advantage that these functions - being expotential-type orbitals (ETO's) - can represent the nuclear cusp and the correct large-distance behaviour of the wavefunctions. Consequently smaller basis sets are required than for Gaussian-type orbitals. As compared to other types of ETO's, B func ... Versions of this program held in the CPC repository in Mendeley Data ACJU_v1_0; S_INT; 10.1016/0010-4655(92)90154-Q This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/pvns9j5r6z
title: Data for: Iron-bound carbon increases along a freshwater−oligohaline gradient in a subtropical tidal wetland

description: Soil properties and plant biomass: salinity, pH, bulk density, moisture content, ORP; aboveground and belowground biomass; root Fe piaque;
Enzyme activity and bacterial abundance: cellobiohydrolase, phenol oxidase, Geobacter and Gallionella;
Solid-phase Fe species: non-sulfidic Fe(II), Fe sulfides, amorphous Fe(III), crystalline Fe(III) and molar Fe(II):Fe(III) ratios;
Soil C and Fe-bound C pool: SOC pool, molar OC:Fe ratio, Fe-bound C pool and the ratio of Fe-bound C pool to SOC pool.
DOI: 10.3535/29w-yfp-f7h
title: Glyptolepis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zj1-w44-c9r
title: Protitanichthys

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/7vrsy9f2fx
title: Phase Separation in Innate Immunity: Teleost IL6Ra's Evolutionary Leap Against Viruses. Yinjie zhao et al
DOI: 10.3535/nhj-crj-mzd
title: Glyptolepis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xe1-pm4-fg8
title: Holonema J.E. Areschoug, 1855

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/59rk7j2cfj
title: The Aesthetic Theories of Minor White - Revised

description: The paper The Aesthetic Theories of Minor White has been revised to include important articles that Minor White had published which enhance the research paper substantially. Additionally, I create a cover portrait of Minor with the title of the paper.
DOI: 10.3535/hbw-3h0-dd1
title: Holonema J.E. Areschoug, 1855

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zyw-3a1-16b
title: Holonema J.E. Areschoug, 1855

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/crr449brdg
title: Technology Pearl: Utilizing Dermatoscope Adapter to Obtain High-Resolution Histopathologic Photographs with Modern Multi-lens Smartphone Cameras - Supplemental Video

description: In this video, the MCC adapter placement onto an iPhone 13 Pro Max is demonstrated. Once tightened and held up to the microscope eyepiece, a focused/magnified image can then be captured.
DOI: 10.3535/eg8-at7-h0c
title: Holonema J.E. Areschoug, 1855

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25962187.v1
title: Orchard Oriole Syllable Library and Categorization

description: Library of Orchard Oriole syllable types, categorized by Moreland et al. (in prep). Categorized from 3 songs each from 30 males and 15 females Orchard Orioles. For recording methods, see Moyer et al. 2022.Sheet 1 shows the syllable library, with a spectrogram showing the first usage of each syllable type. Sheet 2 shows the assigned categorization for each individual Orchard Oriole song and calculations of syllable variability within song and within individual.
DOI: 10.3535/f57-zc6-c6v
title: Holonema J.E. Areschoug, 1855

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/k92-d97-k9v
title: Holonema J.E. Areschoug, 1855

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/xhm3x845tg
title: Machine learning methods for unveiling the potential of antioxidant short peptides in goat milk-derived proteins during in vitro gastrointestinal digestion

description: SUPPLEMENTARY MATERIALS
DOI: 10.3535/4x9-17s-el6
title: Holonema J.E. Areschoug, 1855

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jxx-1kd-x03
title: Holonema J.E. Areschoug, 1855

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1gl-tqk-621
title: Holonema J.E. Areschoug, 1855

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.