cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.2ykqyx
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lonchocarpus benthamianus Pittier"
 ]
}

 The dataset includes 31 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0151486-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.klzgey
title: Occurrence Download

description: A dataset containing 5265 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acacia saligna (Labill.) H.L.Wendl."
 ]
}

 The dataset includes 5265 records from 138 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009055-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gswoyv
title: Occurrence Download

description: A dataset containing 425 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-109.66553 33.28857,-110.74219 33.17871,-110.39062 30.98145,-104.63379 30.98145,-104.89746 32.51953,-109.66553 33.28857))",
 "HasCoordinate is true",
 "TaxonKey is Anaxyrus debilis (Girard, 1854)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 425 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009286-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d7g7bh
title: Occurrence Download

description: A dataset containing 260526 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lamprotornis nitens (Linnaeus, 1766))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 260526 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058364-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kye3gp
title: Occurrence Download

description: A dataset containing 127 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Hydroelectric Environmental Impact Assessment Bird Data for Mount Coffee"
 ]
}

 The dataset includes 127 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032553-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vrra3p
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chaetoceros peruvianus",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 22 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032555-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p9etn7
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chaetoceros peruvianus",
 "Country is Oman",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032557-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fwt2e7
title: Occurrence Download

description: A dataset containing 472 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chaetoceros peruvianus",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 472 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032556-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.exh2h4
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Strobilanthes kunthianus"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032560-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5twkw5
title: Occurrence Download

description: A dataset containing 1985 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Indonesia",
 "OccurrenceStatus is Present",
 "TaxonKey is Persicaria"
 ]
}

 The dataset includes 1985 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032562-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48437/c598d3-52647b
title: Wurzeln einer Weidenspreitlage im Testbecken 2021 - Roots of willow bush mattress in a test basin in 2021
title: Wurzeln zur Ufersicherung

description: Im Jahr 2021 wurde im Versuchsbecken der BAW eine Weidenspreitlage eingebaut. Nach einer 23-wöchigen Wachstumsphase wurden Zugversuche an Einzelwurzeln und Wurzelbündeln und Wurzelaufgrabungen durchgeführt.
 
 In 2021, a willow bush mattress was installed in a test basin. After a 23-week growth phase, tensile tests were carried out on individual roots and root bundles, and roots were excavated.
DOI: 10.15468/dl.3w5vmg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arborophila rufogularis",
 "Country is one of (Brunei Darussalam, Indonesia, Philippines, Timor-Leste, Singapore)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032563-250920141307145/datasets/export for details.
DOI: 10.15468/dl.mk5stg
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Protozoa Abundance_Microbial Parameters"
 ]
}

 The dataset includes 92 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032564-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17231969
title: NoisyAG-News: A Benchmark for Addressing Instance-Dependent Noise in Text Classification

description: Real-world text classification is challenged by instance-dependent noise (IDN), yet Learning with Noisy Labels (LNL) research predominantly relies on simplistic synthetic models, creating a critical disconnect between academic evaluation and practice. To bridge this gap, we introduce NoisyAG-News, a large-scale benchmark with controllable, real-world IDN. Constructed via a meticulous multi-annotator process on 50,000 samples, our benchmark embodies the genuine cognitive biases inherent in human annotation. Our analysis of this benchmark yields two fundamental insights. First, we reveal why realistic IDN is substantially more destructive than synthetic noise: unlike the initial resistance models show to synthetic errors, it causes immediate learning contamination that leads to a catastrophic, generalizable "Short-Plank Effect." Second, we identify the distinct causal mechanisms of realistic noise sources: a top-down, semantic "Fallback" for human errors versus a bottom-up, feature-driven "Collapse" for LLM biases. NoisyAG-News provides a crucial testbed and a deeper understanding of noise to accelerate the development of LNL algorithms that are genuinely robust to real-world challenges.
DOI: 10.5281/zenodo.17231970
title: NoisyAG-News: A Benchmark for Addressing Instance-Dependent Noise in Text Classification

description: Real-world text classification is challenged by instance-dependent noise (IDN), yet Learning with Noisy Labels (LNL) research predominantly relies on simplistic synthetic models, creating a critical disconnect between academic evaluation and practice. To bridge this gap, we introduce NoisyAG-News, a large-scale benchmark with controllable, real-world IDN. Constructed via a meticulous multi-annotator process on 50,000 samples, our benchmark embodies the genuine cognitive biases inherent in human annotation. Our analysis of this benchmark yields two fundamental insights. First, we reveal why realistic IDN is substantially more destructive than synthetic noise: unlike the initial resistance models show to synthetic errors, it causes immediate learning contamination that leads to a catastrophic, generalizable "Short-Plank Effect." Second, we identify the distinct causal mechanisms of realistic noise sources: a top-down, semantic "Fallback" for human errors versus a bottom-up, feature-driven "Collapse" for LLM biases. NoisyAG-News provides a crucial testbed and a deeper understanding of noise to accelerate the development of LNL algorithms that are genuinely robust to real-world challenges.
DOI: 10.15468/dl.am7xqv
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Asterionellopsis glacialis",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032565-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kjk2dh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Asterionellopsis glacialis",
 "Country is Colombia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032566-250920141307145/datasets/export for details.
DOI: 10.15468/dl.g2rezb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Asterionellopsis glacialis",
 "Country is Ukraine",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032568-250920141307145/datasets/export for details.
DOI: 10.15468/dl.kf6hmf
title: Occurrence Download

description: A dataset containing 4067 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Benthic communities and environmental parameters in three Mediterranean ports (Sardinia, Crete, Tunisia)"
 ]
}

 The dataset includes 4067 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032567-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.58132/8wypqc
title: Theoretical predictions of spectral properties of multilayer boron nitride introduced by point defects

description: This dataset contains data for the manuscript "Theoretical predictions of spectral properties of multilayer boron nitride introduced by point defects".Selected point defects of boron nitride and various stacking types for di- and trilayers (plus one pentalayer) were studied by theoretical methods, like DFT and TD-DFT, as well as GFN2-xT and ZINDO within the finite-cluster approach.Optimized geometries, spectral data, and raw output files are provided. In addition, natural transition orbitals in the molden format are available.Please consult the README file for additional information (including the structure of the dataset and software recommended for opening files).
DOI: 10.6084/m9.figshare.30244276
title: Supplementary Material for: Evolution of growth following anti-TNF-α therapy in paediatric Crohn’s disease: data from the Swiss IBD Cohort Study

description: Objectives: Up to 85% of paediatric patients affected by Crohn’s disease experience growth failure. This study aims to elucidate the effects of anti-TNF biologics on patient growth. 
Methods: This retrospective analysis examined height, height velocity and weight in paediatric patients with Crohn’s disease from the Swiss Inflammatory Bowel Disease Cohort Study between 2007 and 2020 (n=97). Z-scores were determined according to age and gender of a healthy paediatric population. Growth of patients treated with anti-TNF biologics and immunomodulators was analyzed by linear regression over 5 years and compared within each subgroup by paired Student t-tests 1 year (T1), 2 years (T2) and 5 years (T5) after treatment initiation. 
Results: Mean height and weight z-scores at diagnosis were -0.3±1.3 and -1.0±1.6 respectively (age at diagnosis 11.1±2.7 years, 52.0% male). Initial treatment was led by azathioprine (58.3%) and infliximab (19.8%). Patients treated with biologics exhibited significant height increase at T1 (p=0.022), with an overall flat height evolution (y=0.00x-0.31), whereas significant weight increase was maintained at T5 (p=0.0005, y=0.13x-0.50). Patients on immunomodulators showed a height increase (y=0.15x-0.20) and a significant weight increase at T2 (p=0.0047, y=0.10x-0.41). Height velocity z-scores showed a significant increase across both genders. Factors contributing to a decreased height z-score included male sex, age 10 and below at diagnosis, a concomitant corticosteroid treatment and a top-down treatment strategy. 
Conclusions: Our findings indicate that anti-TNF biologics are associated with significant short-term height and long-term weight gains in paediatric patients with Crohn’s disease, similar to those observed with immunomodulators.
DOI: 10.6084/m9.figshare.30244276.v1
title: Supplementary Material for: Evolution of growth following anti-TNF-α therapy in paediatric Crohn’s disease: data from the Swiss IBD Cohort Study

description: Objectives: Up to 85% of paediatric patients affected by Crohn’s disease experience growth failure. This study aims to elucidate the effects of anti-TNF biologics on patient growth. 
Methods: This retrospective analysis examined height, height velocity and weight in paediatric patients with Crohn’s disease from the Swiss Inflammatory Bowel Disease Cohort Study between 2007 and 2020 (n=97). Z-scores were determined according to age and gender of a healthy paediatric population. Growth of patients treated with anti-TNF biologics and immunomodulators was analyzed by linear regression over 5 years and compared within each subgroup by paired Student t-tests 1 year (T1), 2 years (T2) and 5 years (T5) after treatment initiation. 
Results: Mean height and weight z-scores at diagnosis were -0.3±1.3 and -1.0±1.6 respectively (age at diagnosis 11.1±2.7 years, 52.0% male). Initial treatment was led by azathioprine (58.3%) and infliximab (19.8%). Patients treated with biologics exhibited significant height increase at T1 (p=0.022), with an overall flat height evolution (y=0.00x-0.31), whereas significant weight increase was maintained at T5 (p=0.0005, y=0.13x-0.50). Patients on immunomodulators showed a height increase (y=0.15x-0.20) and a significant weight increase at T2 (p=0.0047, y=0.10x-0.41). Height velocity z-scores showed a significant increase across both genders. Factors contributing to a decreased height z-score included male sex, age 10 and below at diagnosis, a concomitant corticosteroid treatment and a top-down treatment strategy. 
Conclusions: Our findings indicate that anti-TNF biologics are associated with significant short-term height and long-term weight gains in paediatric patients with Crohn’s disease, similar to those observed with immunomodulators.
DOI: 10.15468/dl.99duks
title: Occurrence Download

description: A dataset containing 563 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arborophila rubrirostris",
 "Country is one of (Brunei Darussalam, Indonesia, Philippines, Timor-Leste, Singapore)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 563 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032570-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30244183
title: Atmospheric Chlorine Wet Deposition in China: National Decreases but Localized Increases in Urban Agglomerations

description: We compiled data from the network and 246 published studies to establish China's first long-term dataset of atmospheric Cl wet deposition from 1990 to 2020. Utilizing an optimized random forest model incorporating multi-source environmental factors, we generated a national Cl wet deposition grid dataset at 0.1° × 0.1° resolution for 2000–2020.
DOI: 10.6084/m9.figshare.30244183.v1
title: Atmospheric Chlorine Wet Deposition in China: National Decreases but Localized Increases in Urban Agglomerations

description: We compiled data from the network and 246 published studies to establish China's first long-term dataset of atmospheric Cl wet deposition from 1990 to 2020. Utilizing an optimized random forest model incorporating multi-source environmental factors, we generated a national Cl wet deposition grid dataset at 0.1° × 0.1° resolution for 2000–2020.
DOI: 10.15468/dl.7x489q
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Strobilanthes kunthianus"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032572-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ghzjdn
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hemiaulus sinensis",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032571-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qe6ryk
title: Occurrence Download

description: A dataset containing 46175 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is FRA.11_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Cupressaceae"
 ]
}

 The dataset includes 46175 records from 327 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032569-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.69tq48
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arborophila cambodiana",
 "Country is one of (Brunei Darussalam, Indonesia, Philippines, Timor-Leste, Singapore)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032573-250920141307145/datasets/export for details.
DOI: 10.15468/dl.auzu62
title: Occurrence Download

description: A dataset containing 1906911 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Korea, Republic of",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 1906911 records from 297 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032538-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a75rmb
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ommastrephes bartramii)",
 "HasCoordinate is true",
 "Geometry POLYGON((20.000000 -50.000000, 120.000000 -50.000000, 120.000000 30.000000, 20.000000 30.000000, 20.000000 -50.000000))"
 ]
}

 The dataset includes 12 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032574-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.byss63
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leptocylindrus danicus",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 57 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032575-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17143815
title: Pseudotime reconstruction of cytokinesis - examples

description: These two dataset represent a subset of the raw data that was acquired for pseudotime reconstruction of the intercellular bridge development in 6 cytokinetic steps.

The data are fluorescence images of expanded NRK49F cells, undergoing cytokinesis. The images were acquired as z-stacks with 1 µm spacing and a x/y-pixel size of 90 nm on a spinning disk confocal microscope. Septin2-GFP, tubulin, a variable target and DAPI are visualized in 4 channels. 

The dataset is related to Zach Marin's 'Cytokinesis Pseudotime Analysis' package https://github.com/zacsimile/cytokinesis-pseudotime-analysis

In order to test run the code, two different targets (MKLP1 and actin) are provided in /...example and /...example_2. Each target includes images of 6 differet stages (RC, CS, RS, SM, BA, A).

The included xlsx-files provide the necessary information (length, X, Y) for aligning the intercellular bridges.

A more detailed instruction for the use of this datset can be found on the Github page for 'Cytokinesis Pseudotime Analysis'.

 

This version includes the targets.yaml file, which simplifies the integration of the example data with the script looped_images_over_pseudotime copy.ipynb.
DOI: 10.5281/zenodo.17151188
title: Pseudotime reconstruction of cytokinesis - examples

description: These two dataset represent a subset of the raw data that was acquired for pseudotime reconstruction of the intercellular bridge development in 6 cytokinetic steps.

The data are fluorescence images of expanded NRK49F cells, undergoing cytokinesis. The images were acquired as z-stacks with 1 µm spacing and a x/y-pixel size of 90 nm on a spinning disk confocal microscope. Septin2-GFP, tubulin, a variable target and DAPI are visualized in 4 channels. 

The dataset is related to Zach Marin's 'Cytokinesis Pseudotime Analysis' package https://github.com/zacsimile/cytokinesis-pseudotime-analysis

In order to test run the code, two different targets (MKLP1 and actin) are provided in /...example and /...example_2. Each target includes images of 6 differet stages (RC, CS, RS, SM, BA, A).

The included xlsx-files provide the necessary information (length, X, Y) for aligning the intercellular bridges.

A more detailed instruction for the use of this datset can be found on the Github page for 'Cytokinesis Pseudotime Analysis'.

 

This version includes the targets.yaml file, which simplifies the integration of the example data with the script looped_images_over_pseudotime copy.ipynb.