cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/9627f25e2a6b9efc75f599e4b5f0d221
title: Assessing the use of bison for savanna restoration at Cedar Creek Ecosystem Science Reserve: Consumption

description: Oak savanna is the most threatened ecosystem in Minnesota and fire, alone, is not restoring and preserving it. Our savanna restoration research started more than a half century ago in what had once been native savanna at Cedar Creek. It has shown that burning about 4 to 7 times per decade eliminates shrubs and non-savanna tree species and restores prairie grassland species. However, our 50 years of research is also showing that these frequent and intense fires are preventing oaks from regenerating. Bison are now known to be a keystone species for restoring and preserving grasslands, but their roles in savanna ecosystems remain unknown. In grasslands, bison preferentially graze the dominant warm season grasses that would otherwise outcompete wildflowers, thereby promoting plant coexistence and enhancing plant diversity. Here we propose to test whether bison grazing might promote the growth and survivorship of oak seedlings in burned savannas by reducing grass fuel for fires and by knocking back dominant grass competitors. We will maintain the existing fire frequencies and the design of the long-term burning experiment, while adding bison grazing as an additional factor in part of several burn units on the southeast side of the property. Bison will graze during the summer and early fall seasons. Grazing exclosures will be established, and oak seedlings will be planted, to test effects of bison grazing on early oak growth and survivorship. The outcomes we plan to achieve are to: (1) discover better restoration and preservation practices for savanna ecosystems; (2) determine how these practices impact savanna biodiversity; and (3) educate Minnesotans about the ecological heritage of their state, including the roles that bison, fire and biodiversity play in the functioning of savannas and other Minnesota ecosystems. We will achieve these goals and outcomes by: (1) restoring bison grazing to 200 acres of oak savanna; (2) experimentally testing whether bison grazing promotes savanna biodiversity; and (3) disseminating results to K-12 students and visitors.
DOI: 10.5281/zenodo.5113912
title: Experimental and numerical study of the effect of model geometric distortion on laboratory modelling of urban flooding

description: The supporting datasets includes: (1) All the figures in the manuscript in .fig format (in case possible) - Figures in main text - Figure in Support Information (2) Datasets for generating the main outcomes of the manuscript - two files that explain detailed data content in three structure - 3 sub-repositories which contains the results for the three models - one repository contains the data for Figure 8
DOI: 10.5281/zenodo.4715266
title: Experimental and numerical study of the effect of model geometric distortion on laboratory modelling of urban flooding

description: The supporting datasets includes: (1) All the figures in the manuscript in .fig format (in case possible) - Figures in main text - Figure in Support Information (2) Datasets for generating the main outcomes of the manuscript - two files that explain detailed data content in three structure - 3 sub-repositories which contains the results for the three models - one repository contains the data for Figure 8
DOI: 10.5281/zenodo.5113924
title: On the impact of different templates on creating and understanding user stories - Supplemental Material

description: Here we include the supplementary material that may be used as a replication package for the quasi-experiment reported in the paper "On the impact of different templates on creating and understanding user stories", submitted to RE 2021 (International Requirements Engineering Conference).
DOI: 10.5281/zenodo.5113923
title: On the impact of different templates on creating and understanding user stories - Supplemental Material

description: Here we include the supplementary material that may be used as a replication package for the quasi-experiment reported in the paper "On the impact of different templates on creating and understanding user stories", submitted to RE 2021 (International Requirements Engineering Conference).
DOI: 10.5281/zenodo.5113914
title: Sampled Notebooks from Notebook Archaeology

description: A zip file containing the 100,000 Jupyter notebooks randomly sampled from GitHub notebooks published through February 2021. The notebook outputs have been stripped. This dataset was used in the publication "Notebook Archaeology: Inferring Provenance from Computational Notebooks", IPAW 2021.
DOI: 10.6073/pasta/ab2fd5349925a9d28b289566a7686905
title: Interagency Ecological Program: Water quality, fish, phytoplankton, clams and zooplankton monitoring to support the Summer-Fall Suisun Marsh Salinity Control Gates Action 2018-2020

description: The Suisun Marsh Salinity Control Gates (SMSCG) have the potential to increase low-salinity-zone habitat for endangered Delta Smelt (Hypomesus transpacificus, California Endangered Species Act listed as Endangered, Federal Endangered Species Act listed as Threatened), and to allow them to more frequently occupy Suisun Marsh, especially Montezuma Slough, one of their most important rearing habitats. Operation of the SMSCG in summer and fall to improve Delta Smelt habitat are called for in the Biological Opinion and Incidental Take permit for the Central Valley Project and State Water Project. To support the adaptive management of the action, the California Department of Water Resources monitored the change in water quality, phytoplankton, zooplankton, fishes, and clams resulting from the action in 2018. This data package includes data collected by the Interagency Ecological Program’s (IEP) long-term monitoring programs supplemented with targeted sample collection where existing surveys lack spatial or temporal coverage. This package also includes modeling the change in Delta Smelt habitat based on area of open water with appropriate temperature, salinity, and turbidity. Monitoring during no-action years (2019 and 2020) will be used as a baseline for comparison during action years. This data package will be updated annually during both action years and non-action years.
DOI: 10.25345/c56537
title: MassIVE MSV000087850 - Identification of protein interactors of an E3 ligase
title: This study was to identifiy proteins that interact with a TRIM E3 ligase. A GFP-tagged TRIM protein was expressed in HEK293 cells and immunoprecipitated using a GFP antibody. Proteins coimmunoprecipitated were identified via mass-spectrometry.
DOI: 10.15468/74skmh
title: A new species of Cymbospondylus (Diapsida, Ichthyosauria) from the Middle Triassic of Nevada and a re-evaluation of the skull osteology of the genus

description: This dataset contains the digitized treatments in Plazi based on the original journal article Fröbisch, Nadia B., Sander, P. Martin, Rieppel, Olivier (2006): A new species of Cymbospondylus (Diapsida, Ichthyosauria) from the Middle Triassic of Nevada and a re-evaluation of the skull osteology of the genus. Zoological Journal of the Linnean Society 147 (4): 515-538, DOI: 10.1111/j.1096-3642.2006.00225.x, URL: https://academic.oup.com/zoolinnean/article-lookup/doi/10.1111/j.1096-3642.2006.00225.x
DOI: 10.7284/143319
title: Expendable Probe data collected during research cruise LMG1109 using a Sippican MK21 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/143320
title: Expendable Probe data collected during research cruise LMG1109 using a Sippican MK21 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/143321
title: GNSS (Global Navigation Satellite System) data collected during research cruise LMG1109 using a Garmin 19x instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/143322
title: Gyrocompass data collected during research cruise LMG1109 using a SGB Meridian instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/143323
title: INS (Inertial Navigation System) data collected during research cruise LMG1109 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/143318
title: TSG (Thermosalinograph) data collected during research cruise LMG1109 using a Sea-Bird SBE-45 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.15468/y89jdv
title: A new species of the genus Lightiella: the first record of Cephalocarida (Crustacea) in Europe

description: This dataset contains the digitized treatments in Plazi based on the original journal article Carcupino, Marcella, Floris, Antonello, Addis, Alberto, Castelli, Alberto, Curini-Galletti, Marco (2006): A new species of the genus Lightiella: the first record of Cephalocarida (Crustacea) in Europe. Zoological Journal of the Linnean Society 148 (2): 209-220, DOI: 10.1111/j.1096-3642.2006.00237.x, URL: https://academic.oup.com/zoolinnean/article-lookup/doi/10.1111/j.1096-3642.2006.00237.x
DOI: 10.7284/143326
title: Fluorometer data collected during research cruise LMG1108 using a WET Labs ECO-FL instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/143336
title: GNSS (Global Navigation Satellite System) data collected during research cruise LMG1108 using a Garmin 19x instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/143337
title: Gyrocompass data collected during research cruise LMG1108 using a SGB Meridian instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/143338
title: INS (Inertial Navigation System) data collected during research cruise LMG1108 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.3886/e145422
title: Bringing Transparency to Predictive Analytics: A Systematic Comparison of Predictive Modeling Methods in Higher Education

description: Colleges have increasingly turned to predictive analytics to target at-risk students for additional support. Most of the predictive analytic applications in higher education are proprietary, with private companies offering little transparency about their underlying models. We address this lack of transparency by systematically comparing two important dimensions: (1) different approaches to sample and variable construction and how these affect model accuracy; and (2) how the selection of predictive modeling approaches, ranging from methods many institutional researchers would be familiar with to more complex machine learning methods, impacts model performance and the stability of predicted scores. The relative ranking of students’ predicted probability of completing college varies substantially across modeling approaches. While we observe substantial gains in performance from models trained on a sample structured to represent the typical enrollment spells of students and with a robust set of predictors, we observe similar performance between the simplest and most complex models.
DOI: 10.3886/e145422v1
title: Bringing Transparency to Predictive Analytics: A Systematic Comparison of Predictive Modeling Methods in Higher Education

description: Colleges have increasingly turned to predictive analytics to target at-risk students for additional support. Most of the predictive analytic applications in higher education are proprietary, with private companies offering little transparency about their underlying models. We address this lack of transparency by systematically comparing two important dimensions: (1) different approaches to sample and variable construction and how these affect model accuracy; and (2) how the selection of predictive modeling approaches, ranging from methods many institutional researchers would be familiar with to more complex machine learning methods, impacts model performance and the stability of predicted scores. The relative ranking of students’ predicted probability of completing college varies substantially across modeling approaches. While we observe substantial gains in performance from models trained on a sample structured to represent the typical enrollment spells of students and with a robust set of predictors, we observe similar performance between the simplest and most complex models.
DOI: 10.6084/m9.figshare.17120279
title: Additional file 5 of Identification and expression analysis of the glycosyltransferase GT43 family members in bamboo reveal their potential function in xylan biosynthesis during rapid growth

description: Additional file 5: Table S5. The expression of PeGT43s in different tissues based on transcriptome data.
DOI: 10.6084/m9.figshare.17120279.v1
title: Additional file 5 of Identification and expression analysis of the glycosyltransferase GT43 family members in bamboo reveal their potential function in xylan biosynthesis during rapid growth

description: Additional file 5: Table S5. The expression of PeGT43s in different tissues based on transcriptome data.
DOI: 10.6084/m9.figshare.17120249.v1
title: Additional file 10 of Identification and expression analysis of the glycosyltransferase GT43 family members in bamboo reveal their potential function in xylan biosynthesis during rapid growth

description: Additional file 10: Table S7. Primers used for RT-qPCR.
DOI: 10.15468/i32i5a
title: Caracterización vegetal de una zona de alta montaña (litoral de San Juan) como herramienta de proyección para el establecimiento de una figura de conservación en el chocó biogeográfico

description: La flora establecida en el páramo del Duende corresponde a especies vegetales que revisten de suma importancia para el establecimiento y colonización de una serie de diferentes formas de vida dentro de este ecosistema, lugar donde un gran número de organismos han encontrado el hábitat propicio para un óptimo desarrollo.

En este conjunto de datos se presenta la diversidad de vegetación de este páramo y se da a conocer un significativo grupo de plantas nunca antes publicadas para la región, que revisten de mucha importancia para el conocimiento, uso y conservación del ecosistema.

Esperamos que con esta información puesta a su disposición, se contribuya a la conservación del estado actual de este importante ecosistema y de igual manera sirva de base a las autoridades ambientales para tomar decisiones encaminadas al conocimiento, manejo y conservación del ecosistema paramuno en su jurisdicción.
DOI: 10.6084/m9.figshare.12923324
title: Additional file 1 of LncRNA PSMB8-AS1 contributes to pancreatic cancer progression via modulating miR-382-3p/STAT1/PD-L1 axis

description: Additional file 1: Table 1. Association of PSMB8-AS1 expression with clinicopathological features of the PC patients.
DOI: 10.15468/rp0b8u
title: Biodiversidad en las propuestas para declaratoria de Áreas Protegidas en los Municipios de Dagua, Restrepo, La Cumbre y Vijes y un Grupo de Reservas Naturales de la Sociedad Civil

description: Este recurso corresponde a la información biológica generada en la ejecución de tres proyectos, los cuales fueron desarrollados en el marco de la convocatoria Conserva Colombia 5 para la declaratoria de nuevas áreas protegidas en el Valle del Cauca. Con el apoyo del Fondo Para la Acción Ambiental y la Niñez, La Corporación Autónoma Regional del Valle del Cauca (CVC), La Fundación Gaia y la Corporación Ambiental y Forestal de Pacifico (CORFOPAL).  Para el proyecto desarrollado en el municipio de Dagua se cuenta con un total de 823 registros repartidos en los 4 grupos biológicos (Aves, Plantas, Mamíferos y Herpetos) de las cuales se destacan especies de importancia para la comunidad como la Marteja y el Otobo. Por su parte para el proyecto desarrollado en Restrepo, La Cumbre y Vijes se cuenta con 1023 registros para los mismos grupos biológicos. Sobresale la presencia de especies como la Oncilla y algunos arbustos propios de Bosque Seco.
DOI: 10.48328/tudatalib-1350
title: GNOSIS Flugzeugmodelle

description: Diese zusätzlichen Informationen dokumentieren den Umsetzungsprozess der GNOSIS Fallstudie anhand des Frameworks in den drei Methodenteilen ex-post Sachbilanz, ex-ante Sachbilanz und prospektive Sachbilanz. Die Nachbildung erfolgt für die drei 19-Sitzer Flugzeugvarianten konventionelles, hybridelektrisches und brennstoffzellenelektrisches Flugzeug auf Basis der Beechcraft 1900D. Mit der Methodenanwendung folgt aus dem Flugzeugvorentwurf die Ausbildung von einem Transportmodell des CA, zwei Transformationsmodellen von HEA und FCEA sowie sechs Zukunftsveränderungsmodellen aller Flugzeuge.
DOI: 10.6084/m9.figshare.17122091
title: Supplementary tables from Distinct gene regulatory signatures of dominance rank and social bond strength in wild baboons

description: This file contains all supplementary tables relevant to this work.
DOI: 10.6084/m9.figshare.17122254
title: Rotigotine protects against oxidized low-density lipoprotein(ox-LDL)-induced damages in human umbilical vein endothelial cells(HUVECs)

description: Rotigotine is a non-ergoline dopamine agonist that has been licensed for the treatment of Parkinson’s disease. Cardiovascular diseases are the world’s leading cause of death. Ox-LDL- induced endothelial damages are involved in the initiation and progression of cardiovascular diseases. In this study, we assessed the beneficial properties of Rotigotine on ox-LDL-induced insults to HUVECs to highlight its potential use in the treatment of cardiovascular diseases. Our findings show that Rotigotine suppresses the expressions of low-density lipoprotein receptor (LDL-R), proprotein convertase subtilisin/kexin type 9 (PCSK-9), and sterol regulatory element-binding protein (SREBP-2). It also inhibits ox-LDL-induced cholesterol accumulation in endothelial cells (ECs), improves U937 monocytes adhesion, and decreases the representation of NADPH oxidase (NOX-4) and generation of reactive oxygen species (ROS) in endothelial cells (ECs). Furthermore, Rotigotine inhibited the expressions of both vascular cellular adhesion molecule-1 (VCAM-1) and intercellular adhesion molecule-1 (ICAM-1) in HUVECs and had anti-inflammatory efficacy in ox-LDL-induced cells by inhibiting the expressions of pro-inflammatory cytokines. Notably, Rotigotine inhibits the activation of nuclear factor-kappaB (NF-κB) by preventing nuclear translocation of NF-κB p65 and reducing the luciferase activity of NF-κB reporter. We, therefore, conclude that these effects of Rotigotine on HUVECs suggest that it may play a therapeutic role in cardiovascular diseases.
DOI: 10.6084/m9.figshare.21316572
title: Oral bacteriome and mycobiome across stages of oral carcinogenesis

description:   
<strong>Supplementary Table 1.</strong> Baseline information of the HC, OPL and OSCC groups.
<strong>Supplementary Table 2. </strong>Differentially abundant bacterial phyla of buccal mucosal samples among three groups.
<strong>Supplementary Table 3. </strong>Differentially abundant bacterial phyla of plaque samples among three groups.
<strong>Supplementary Table 4. </strong>Differentially abundant bacterial phyla of saliva samples among three groups.
<strong>Supplementary Table 5. </strong>Differentially abundant fungal phyla of buccal mucosal samples among three groups.
<strong>Supplementary Table 6. </strong>Differentially abundant fungal phyla of plaque samples among three groups.
<strong>Supplementary Table 7. </strong>Differentially abundant fungal phyla of saliva samples among three groups.
<strong>Supplementary Table 8. </strong>Differentially abundant bacterial genera of buccal mucosal samples among three groups.
<strong>Supplementary Table 9. </strong>Differentially abundant bacterial genera of plaque samples among three groups.
<strong>Supplementary Table 10. </strong>Differentially abundant bacterial genera of saliva samples among three groups.
<strong>Supplementary Table 11. </strong>Differentially abundant fungal genera of buccal mucosal samples among three groups.
<strong>Supplementary Table 12. </strong>Differentially abundant fungal genera of plaque samples among three groups.
<strong>Supplementary Table 13. </strong>Differentially abundant fungal genera of saliva samples among three groups.
DOI: 10.6084/m9.figshare.17122277
title: Rock magnetic data of core MD01-2444 at 26.74 m depth

description: These files contain the original data of rock-magnetic measurements on core MD01-2444 sample at 26.74 m depth.
DOI: 10.6084/m9.figshare.8207324
title: Additional file 3: of Phylogeny, Divergent Evolution, and Speciation of Sulfur-Oxidizing Acidithiobacillus Populations

description: Table S5. Statistics for puative transposases in Acidithiobacillus genomes using the online tool ISFinder. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.8207330
title: Additional file 4: of Phylogeny, Divergent Evolution, and Speciation of Sulfur-Oxidizing Acidithiobacillus Populations

description: Table S6. Prediction of putative phage-associated genes in the genomes of Acidithiobacillus strains, including A. caldus strains SM-1, MTH-04, and ATCC 51756, A. ferrooxidans ATCC 23270, and A. thiooxidans DSM 14366. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.12925928
title: Additional file 11 of The U2AF2 /circRNA ARF1/miR-342–3p/ISL2 feedback loop regulates angiogenesis in glioma stem cells

description: Additional file 11.
DOI: 10.6084/m9.figshare.17120261
title: Additional file 1 of Identification and expression analysis of the glycosyltransferase GT43 family members in bamboo reveal their potential function in xylan biosynthesis during rapid growth

description: Additional file 1: Table S1. Basic characteristics of proteins encoded by GT43 genes in five bamboo species.
DOI: 10.57764/jm3w-3p65
title: Test

description: test
DOI: 10.57764/2zkc-wv36
title: Test

description: test
DOI: 10.6084/m9.figshare.8209487
title: Modeling and Change Detection for Count-Weighted Multilayer Networks

description: In a typical network with a set of individuals, it is common to have multiple types of interactions between two individuals. In practice, these interactions are usually sparse and correlated, which is not sufficiently accounted for in the literature. This article proposes a multilayer weighted stochastic block model (MZIP-SBM) based on a multivariate zero-inflated Poisson (MZIP) distribution to characterize the sparse and correlated multilayer interactions of individuals. A variational-EM algorithm is developed to estimate the parameters in this model. We further propose a monitoring statistic based on the score test of MZIP-SBM model parameters for change detection in multilayer networks. The proposed model and monitoring scheme are validated using extensive simulation studies and the case study from Enron E-mail network.
DOI: 10.6084/m9.figshare.9782513
title: Additional file 1: of Genetic variants in Forkhead box O1 associated with predisposition to sepsis in a Chinese Han population

description: Table S1. The detail information of sepsis special SNPs after initial screening. After whole exome sequencing, synonymous mutations were removed. SNPs only existed in more than 5 sepsis patients and quality score of these SNPs were higher than 95% were selected. The excel file of Table S1 has been submitted as a separate supplementary dataset. (XLS 119 kb)