cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pzu99z
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hitchcockella",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 15 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001005-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18424405
title: Benchmarking AI-Based Co-Folding and Docking Models for Predicting Structures of Orthosteric and Allosteric Ligand–Protein Complexes

description: This Zenodo archive provides the datasets, model prediction outputs, evaluation results, figures, and scripts used in the study “Benchmarking AI-Based Co-Folding and Docking Models for Predicting Structures of Orthosteric and Allosteric Ligand–Protein Complexes: Decoding the Allosteric Blind Spot Using a Landscape-Guided Interpretable AI Framework.”

The archive mirrors the directory structure required by the analysis pipeline and contains two datasets: an Orthosteric (Main) Dataset derived from the DynamicBind benchmark and an Allosteric Dataset derived from the Dunbrack Lab’s KinCoRe resource. All results reported in the manuscript are derived from these datasets.

Protein and ligand structures are not included in this archive. All structures are publicly available from the RCSB Protein Data Bank and can be automatically downloaded using the provided scripts.
DOI: 10.5281/zenodo.18424406
title: Benchmarking AI-Based Co-Folding and Docking Models for Predicting Structures of Orthosteric and Allosteric Ligand–Protein Complexes

description: This Zenodo archive provides the datasets, model prediction outputs, evaluation results, figures, and scripts used in the study “Benchmarking AI-Based Co-Folding and Docking Models for Predicting Structures of Orthosteric and Allosteric Ligand–Protein Complexes: Decoding the Allosteric Blind Spot Using a Landscape-Guided Interpretable AI Framework.”

The archive mirrors the directory structure required by the analysis pipeline and contains two datasets: an Orthosteric (Main) Dataset derived from the DynamicBind benchmark and an Allosteric Dataset derived from the Dunbrack Lab’s KinCoRe resource. All results reported in the manuscript are derived from these datasets.

Protein and ligand structures are not included in this archive. All structures are publicly available from the RCSB Protein Data Bank and can be automatically downloaded using the provided scripts.
DOI: 10.17605/osf.io/3dy8v
title: Data on determinants of restrictive parental mediation in smartphone use among preschool children

description: This dataset contains survey responses from 445 parents of children aged 3–6 years in Surabaya, Indonesia. The study examines determinants of restrictive parental mediation in children’s smartphone use based on Social Cognitive Theory, including parenting style, negative parental attitudes toward media, family dynamics, and parental self-efficacy.
DOI: 10.5281/zenodo.18424374
title: Secure by Culture: A Vision for Transforming Security Culture Through Evidence-Based Understanding of Developer Behavior

description: Interview questions for the Research Paper: Secure by Culture: A Vision for Transforming Security Culture Through Evidence-Based Understanding of Developer Behavior
DOI: 10.5281/zenodo.18424375
title: Secure by Culture: A Vision for Transforming Security Culture Through Evidence-Based Understanding of Developer Behavior

description: Interview questions for the Research Paper: Secure by Culture: A Vision for Transforming Security Culture Through Evidence-Based Understanding of Developer Behavior
DOI: 10.15468/jhvcg3
title: Polystichum caucasicum sp. nov. (Dryopteridaceae), a new, surprisingly hexaploid fern species from the Caucasus

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ekrt, Libor, Jessen, Stefan, Novák, Pavel, Vejvodová, Kateřina, Kalníková, Veronika, Lustyk, Pavel, Fraser-Jenkins, Christopher R. (2025): Polystichum caucasicum sp. nov. (Dryopteridaceae), a new, surprisingly hexaploid fern species from the Caucasus. Phytotaxa 736 (3): 275-287, DOI: 10.11646/phytotaxa.736.3.4, URL: https://doi.org/10.11646/phytotaxa.736.3.4AbstractA new fern species, Polystichum caucasicum sp. nov., is described from the Caucasus region and adjacent areas of Georgia, Armenia, Turkey and Russia. The species was likely overlooked due to its morphological similarity to P. braunii and P. aculeatum, but it can be distinguished by a combination of characters, including a densely scaly rachis, enlarged basal acroscopic pinnules, and long-pointed pinnae. P. caucasicum could also be misidentified as P. kadyrovii in this region; however, a revision of the type material confirms that P. kadyrovii is conspecific with P. aculeatum and therefore not related to the newly described taxon. Genome size analyses (flow cytometry) of 20 individuals revealed an average 2C genome size of 44.7 pg, indicating a hexaploid cytotype, which is also supported by guard cell size measurements. In addition, a comprehensive comparative analysis of genome size characteristics was conducted across the majority of European and Caucasian Polystichum species, providing estimates of genome size, monoploid genome size (1Cx), and genomic GC content. The species produces well-developed fertile spores. Polystichum caucasicum appears to be an endemic of the Caucasus region and adjacent areas, growing in a wide ecological range in humus-rich and rocky beech, ravine or alluvial forests dominated by Acer, Fagus, Tilia and Alnus. Its habitat preferences are documented through four phytosociological relevés and realized climatic niche of the species at known locations was performed using the Chelsa Bioclim dataset.
DOI: 10.5281/zenodo.18396413
title: Chromosome-scale and nuclear haplotype-phased assemblies of Puccinia striiformis f. sp. tritici isolates Pst239E (PstS10) and PstS7

description: Chromosome-scale and nuclear haplotype-phased assemblies of two Puccinia striiformis f. sp. tritici isolates, Pst239E (PstS10) and PstS7

The fully haplotype-phased reference genome for an Australian sampled Pst239E isolate, which belongs to the PstS10 lineage, was generated using PacBio HiFi and Oxford Nanopore Technology (ONT) R10.4-based long-reads and Hi-C as input for Verkko hybrid genome assembler (Rautiainen et al., 2023). The haplotype-phased reference genome of PstS7 used ONT R10.4.1 simplex reads and Hi-C with hifiasm --ont (Cheng et al., 2025). Please see the assembly quality statistics table in the manuscript. 

The assemblies have also been submitted to NCBI with the following accession, waiting to be processed and released. 

Pst239E (PstS10)



PRJNA1260730 : Puccinia striiformis f. sp. tritici haplotype 1 genome sequencing  (haplotype A)

PRJNA1260729 : Puccinia striiformis f. sp. tritici haplotype 2 genome sequencing  (haplotype B)


PstS7



PRJNA1260732 : Puccinia striiformis f. sp. tritici haplotype 1 genome sequencing  (haplotype A)

PRJNA1260731 : Puccinia striiformis f. sp. tritici haplotype 2 genome sequencing  (haplotype B)
DOI: 10.5281/zenodo.18396412
title: Chromosome-scale and nuclear haplotype-phased assemblies of Puccinia striiformis f. sp. tritici isolates Pst239E (PstS10) and PstS7

description: Chromosome-scale and nuclear haplotype-phased assemblies of two Puccinia striiformis f. sp. tritici isolates, Pst239E (PstS10) and PstS7

The fully haplotype-phased reference genome for an Australian sampled Pst239E isolate, which belongs to the PstS10 lineage, was generated using PacBio HiFi and Oxford Nanopore Technology (ONT) R10.4-based long-reads and Hi-C as input for Verkko hybrid genome assembler (Rautiainen et al., 2023). The haplotype-phased reference genome of PstS7 used ONT R10.4.1 simplex reads and Hi-C with hifiasm --ont (Cheng et al., 2025). Please see the assembly quality statistics table in the manuscript. 

The assemblies have also been submitted to NCBI with the following accession, waiting to be processed and released. 

Pst239E (PstS10)



PRJNA1260730 : Puccinia striiformis f. sp. tritici haplotype 1 genome sequencing  (haplotype A)

PRJNA1260729 : Puccinia striiformis f. sp. tritici haplotype 2 genome sequencing  (haplotype B)


PstS7



PRJNA1260732 : Puccinia striiformis f. sp. tritici haplotype 1 genome sequencing  (haplotype A)

PRJNA1260731 : Puccinia striiformis f. sp. tritici haplotype 2 genome sequencing  (haplotype B)
DOI: 10.15468/dl.4r4yte
title: Occurrence Download

description: A dataset containing 13711 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Sapajus nigritus, Sapajus xanthosternos, Sapajus cucullatus, Sapajus apella, Sapajus libidinosus, Sapajus macrocephalus, Sapajus cay, Sapajus robustus)"
 ]
}

 The dataset includes 13711 records from 228 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001006-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4v5bqf
title: Occurrence Download

description: A dataset containing 225 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prionotus albirostris"
 ]
}

 The dataset includes 225 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001007-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t797bp
title: Occurrence Download

description: A dataset listing the 109 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "Geometry POLYGON((-74.19162 4.19339,-74.17807 4.18277,-74.13658 4.21593,-74.15272 4.22543,-74.19162 4.19339))"
 ]
}

 The dataset's 109 records were derived from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001021-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hz9vr8
title: Occurrence Download

description: A dataset containing 13319 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gattyana",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 13319 records from 202 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001010-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.67fj3n
title: Occurrence Download

description: A dataset containing 36 records in GBIF matching the query:
SELECT
 '630' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 72.77152049497572
 AND decimalLatitude &lt;= 79.58564306880243
 AND decimalLongitude &gt;= -59.63252642948289
 AND decimalLongitude &lt;= -32.399858100975436
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 36 records were derived from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001025-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ekn82a
title: Occurrence Download

description: A dataset containing 246 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Wallago attu",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 246 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001011-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18422663
title: Data for PhD thesis

description: Data for PhD thesis. 

 

Please see https://github.com/sungsushi/phd_code
DOI: 10.5281/zenodo.18422662
title: Data for PhD thesis

description: Data for PhD thesis. 

 

Please see https://github.com/sungsushi/phd_code
DOI: 10.15468/dl.67ecfh
title: Occurrence Download

description: A dataset containing 1476 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ferrisia virgata)"
 ]
}

 The dataset includes 1476 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001014-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18424521
title: HOT-304 KOK1807 Optics - LISST, C-Star, AC-S, ECO

description: These Simons Collaboration on Ocean Processes and Ecology (SCOPE) data products were produced by the University of Hawaiʻi at Mānoa with support from the Simons Foundation. 

Four biooptical instruments were plumbed to the underway uncontaminated seawater on the R/V KOK for the HOT-304 cruise to Station ALOHA in the north Pacific Ocean.  Data for each instrument were averaged to the minute and matched to a timestamp on the minute.  LISST:  Filtered values (<0.2 um) removed from all data. The summed volume concentration of particles (in uL/L) are converted to carbon concentrations (umol C /L) using Mender-Deuer and Lessard (2000) conversion factor and is presented for 3 size ranges: 1.35-2 µm, 2-20 µm, and 20-100 µm. Particle volume concentration can be converted to particle concentration by assuming spherical particles. The total particle concentration (#/L) is calculated for particles with a diameter between 1.35 and 100 um. Larger size classes are excluded due to low detection limits and scattering at density gradients. Note that data have not been processed to remove outliers. C-star: beam attenuation coefficient at 650 nm with filtered values (<0.2 um) removed. AC-S: Filtered values (<0.2 um) removed from all data (see White et al., 2017, GRL); data corrected for residual temperature and scattering; AC-S chl a concentrations obtained from a Gaussian fit over absorbance spectra in the red portion of the spectrum, assuming in vivo chl-a specific absorption of 0.0203 m2/mg at 674 nm. Beam attenuation coefficient is presented from 650nm. ECO: filtered values (<0.2 um) removed from chl and volume scattering data; chl fluorescence converted to mg/m3 using factory calibrations. The volume scattering is converted to particle backscattering coefficient following Boss and Pegau (2001).  The timestamp is in UTC.
DOI: 10.5281/zenodo.18424522
title: HOT-304 KOK1807 Optics - LISST, C-Star, AC-S, ECO

description: These Simons Collaboration on Ocean Processes and Ecology (SCOPE) data products were produced by the University of Hawaiʻi at Mānoa with support from the Simons Foundation. 

Four biooptical instruments were plumbed to the underway uncontaminated seawater on the R/V KOK for the HOT-304 cruise to Station ALOHA in the north Pacific Ocean.  Data for each instrument were averaged to the minute and matched to a timestamp on the minute.  LISST:  Filtered values (<0.2 um) removed from all data. The summed volume concentration of particles (in uL/L) are converted to carbon concentrations (umol C /L) using Mender-Deuer and Lessard (2000) conversion factor and is presented for 3 size ranges: 1.35-2 µm, 2-20 µm, and 20-100 µm. Particle volume concentration can be converted to particle concentration by assuming spherical particles. The total particle concentration (#/L) is calculated for particles with a diameter between 1.35 and 100 um. Larger size classes are excluded due to low detection limits and scattering at density gradients. Note that data have not been processed to remove outliers. C-star: beam attenuation coefficient at 650 nm with filtered values (<0.2 um) removed. AC-S: Filtered values (<0.2 um) removed from all data (see White et al., 2017, GRL); data corrected for residual temperature and scattering; AC-S chl a concentrations obtained from a Gaussian fit over absorbance spectra in the red portion of the spectrum, assuming in vivo chl-a specific absorption of 0.0203 m2/mg at 674 nm. Beam attenuation coefficient is presented from 650nm. ECO: filtered values (<0.2 um) removed from chl and volume scattering data; chl fluorescence converted to mg/m3 using factory calibrations. The volume scattering is converted to particle backscattering coefficient following Boss and Pegau (2001).  The timestamp is in UTC.
DOI: 10.15468/dl.vkf5vz
title: Occurrence Download

description: A dataset containing 16059 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Alosa sapidissima"
 ]
}

 The dataset includes 16059 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001015-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2fxqm5
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phestilla minor",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 53 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001016-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21979/n9/l0lnd2
title: Replication Data for: Lifetime Mapping Using Femtosecond Time-Resolved Photoemission Electron Microscopy

description: Replication Data for: Lifetime Mapping Using Femtosecond Time-Resolved Photoemission Electron Microscopy
DOI: 10.15468/dl.nafenc
title: Occurrence Download

description: A dataset containing 842 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Peucedanum japonicum"
 ]
}

 The dataset includes 842 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001017-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00012567.0
title: Available datapackage for study '2183 SARS-CoV-2 Rapid Antigen Test'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.21227/xhvj-fp09
title: "Soil Moisture Fall 2007 Casselman Canada"

description: "This is a dataset of surface volumetric soil moisture collected using ThetaProbes. Measurements were taken on bare agricultural fields near Casselman, Ontario, Canada. Data collection occurred in the Fall of 2007 (October 31 and November 16) after fall harvest."
DOI: 10.34740/kaggle/dsv/14666685
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.18419372
title: • धार Dhār (District Dhār, Madhya Pradesh). Inscription of the time of Bhoja on an image of the Jain goddess Ambikā dated saṃvat 1091 (translation).

description: धार Dhār (District Dhār, Madhya Pradesh). Inscription of the time of Bhoja on an image of the Jain goddess Ambikā dated saṃvat 1091 (translation).
DOI: 10.15468/dl.e6cgre
title: Occurrence Download

description: A dataset listing the 283 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Aves de México I"
 ]
}

 The dataset's 283 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000467-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xwrn8d
title: Occurrence Download

description: A dataset containing 12696 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (United States of America, Canada)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bombus affinis"
 ]
}

 The dataset includes 12696 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000460-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.teszpv
title: Occurrence Download

description: A dataset containing 285 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Schizodon borellii"
 ]
}

 The dataset includes 285 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000459-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/7w2g82
title: Two new species of freshwater ostracods (Crustacea: Ostracoda) from the northeast of Thailand, with notes on sexually reproducing populations of Chrissia and Strandesia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Savatenalinton, Sukonthip (2025): Two new species of freshwater ostracods (Crustacea: Ostracoda) from the northeast of Thailand, with notes on sexually reproducing populations of Chrissia and Strandesia. Zootaxa 5717 (2): 235-257, DOI: 10.11646/zootaxa.5717.2.4, URL: https://doi.org/10.11646/zootaxa.5717.2.4AbstractTwo new species of freshwater ostracods (Chrissia ueluenakarati sp. nov. and Strandesia buengkanensis sp. nov.) were discovered from a marshy area next to a weir in Bueng Kan Province, northeast Thailand, and the descriptions are provided here. Both were sexual populations and thus reproductive organs were compared within their genera. Chrissia ueluenakarati sp. nov. is the first sexual population of the genus in Southeast Asia. Chrissia species with sexual populations are also listed here. Strandesia buengkanensis sp. nov. belongs to a group with S. kraepelini (Müller, 1906) and S. karanovicae Savatenalinton, 2024, based on the absence of the subapical dorsal seta on the first segment of the antennule, which is endemic to Southeast Asia. A list of the species of Strandesia recorded in Southeast Asia is provided with indications of sexual populations. The presence of the new species in the present contribution, together with previous records, are evidence illustrating the high diversity of the Thai ostracod fauna.
DOI: 10.5281/zenodo.17203765
title: Graph Neural Network models to predict redox potentials, and Iron(II) complexes redox dataset
DOI: 10.5281/zenodo.18419091
title: Graph Neural Network models to predict redox potentials, and Iron(II) complexes redox dataset