cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9276341
title: Molecular diversity in a germplasm collection of avocado accessions from the tropical and subtropical regions of China

description: Abstract Avocado is an economically important crop and widely cultivated in the tropical and subtropical regions of China, whereas little is known about its genetic diversification. Twenty-six EST-SSR markers were developed based on avocado EST sequences. Molecular characterization was applied to assess the genetic relationships among different accessions. In total, nine gSSRs and nine EST-SSRs were selected to illuminate the genetic relationships within the 92 samples. Diversity parameters associated to the selected markers indicated the relatively low genetic diversity and a certain degree of inbreeding in the 92 avocado accessions. Clustering method and principal coordinate analysis clearly distinguished the accessions in accordance to the botanical races and geographic regions by molecular characterization. Moreover, the botanical race or hybrids of some unknown race accessions from different geographic origins could be determined based on known genotypes in the same cluster..
DOI: 10.6084/m9.figshare.9276341.v1
title: Molecular diversity in a germplasm collection of avocado accessions from the tropical and subtropical regions of China

description: Abstract Avocado is an economically important crop and widely cultivated in the tropical and subtropical regions of China, whereas little is known about its genetic diversification. Twenty-six EST-SSR markers were developed based on avocado EST sequences. Molecular characterization was applied to assess the genetic relationships among different accessions. In total, nine gSSRs and nine EST-SSRs were selected to illuminate the genetic relationships within the 92 samples. Diversity parameters associated to the selected markers indicated the relatively low genetic diversity and a certain degree of inbreeding in the 92 avocado accessions. Clustering method and principal coordinate analysis clearly distinguished the accessions in accordance to the botanical races and geographic regions by molecular characterization. Moreover, the botanical race or hybrids of some unknown race accessions from different geographic origins could be determined based on known genotypes in the same cluster..
DOI: 10.6084/m9.figshare.4557754
title: Characterization of mitochondrial DNA polymorphisms in the Han population in Liaoning Province, Northeast China

description: This study characterized the genetic variations of mitochondrial DNA (mtDNA) to elucidate the maternal genetic structure of Liaoning Han Chinese. A total of 317 blood samples of unrelated individuals were collected for analysis in Liaoning Province. The mtDNA samples were analyzed using two distinct methods: sequencing of the hypervariable sequences I and II (HVSI and HVSII), and polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) analysis of the coding region. The results indicated a high gene diversity value (0.9997 ± 0.0003), a high polymorphism information content (0.99668) and a random match probability (0.00332). These samples were classified into 305 haplotypes, with 9 shared haplotypes. The most common haplogroup was D4 (12.93%). The principal component analysis map, the phylogenetic tree map, and the genetic distance matrix all indicated that the genetic distance of the Liaoning Han population from the Tibetan group was distant, whereas that from the Miao group was relatively close.
DOI: 10.6084/m9.figshare.4557754.v1
title: Characterization of mitochondrial DNA polymorphisms in the Han population in Liaoning Province, Northeast China

description: This study characterized the genetic variations of mitochondrial DNA (mtDNA) to elucidate the maternal genetic structure of Liaoning Han Chinese. A total of 317 blood samples of unrelated individuals were collected for analysis in Liaoning Province. The mtDNA samples were analyzed using two distinct methods: sequencing of the hypervariable sequences I and II (HVSI and HVSII), and polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) analysis of the coding region. The results indicated a high gene diversity value (0.9997 ± 0.0003), a high polymorphism information content (0.99668) and a random match probability (0.00332). These samples were classified into 305 haplotypes, with 9 shared haplotypes. The most common haplogroup was D4 (12.93%). The principal component analysis map, the phylogenetic tree map, and the genetic distance matrix all indicated that the genetic distance of the Liaoning Han population from the Tibetan group was distant, whereas that from the Miao group was relatively close.
DOI: 10.6084/m9.figshare.12421832.v1
title: Additional file 4 of QTL mapping of web blotch resistance in peanut by high-throughput genome-wide sequencing

description: Additional file 4: Table S3. The phenotypes and KASP genotyping results of 47 lines. * stands for missing data.
DOI: 10.6084/m9.figshare.12421823
title: Additional file 3 of QTL mapping of web blotch resistance in peanut by high-throughput genome-wide sequencing

description: Additional file 3: Table S2. Genotype and position of the bins in the peanut genetic linkage map obtained in this study. The letter A indicates the genotype of the parental line Zheng8903, and the letter B indicates the genotype of the parental line Yuhua4.
DOI: 10.6084/m9.figshare.12421832
title: Additional file 4 of QTL mapping of web blotch resistance in peanut by high-throughput genome-wide sequencing

description: Additional file 4: Table S3. The phenotypes and KASP genotyping results of 47 lines. * stands for missing data.
DOI: 10.6084/m9.figshare.12421823.v1
title: Additional file 3 of QTL mapping of web blotch resistance in peanut by high-throughput genome-wide sequencing

description: Additional file 3: Table S2. Genotype and position of the bins in the peanut genetic linkage map obtained in this study. The letter A indicates the genotype of the parental line Zheng8903, and the letter B indicates the genotype of the parental line Yuhua4.
DOI: 10.6084/m9.figshare.20286358.v1
title: Osteological and taxonomic reassessments of <i>Sahaliyania elunchunorum</i> (Dinosauria, Hadrosauridae) from the Upper Cretaceous Yuliangzi Formation, northeast China

description: The osteology and taxonomy of the lambeosaurine <i>Sahaliyania elunchunorum</i> from the upper Yuliangzi Formation (middle Maastrichtian) are reevaluated herein. Based on detailed morphological comparisons among hadrosauroids, we argue that Wulaga lambeosaurine specimens, most of which were previously ascribed to <i>S. elunchunorum</i>, display a combination of features that is typical of <i>Amurosaurus riabinini</i> from the upper Udurchukan Formation (middle Maastrichtian) at the Blagoveschensk locality. This combination includes several anterodorsally-posteroventrally oriented lateral foramina of the maxilla with a very large last one partially obscured by the ventral extremity of the jugal contact, a narrow infratemporal region of the jugal that is ∼70% as wide as the orbit, a relatively low anterior third of the strongly dorsally concave sagittal crest of the parietal, mesiodistally wide maxillary tooth crowns (∼1.2–1.3 teeth per cm), the sternal posterolateral process slightly shorter than the anteromedial plate, and a gently ventrally deflected preacetabular process of the ilium. Considering the osteological similarities and the fact that the Yuliangzi and Udurchukan formations were deposited synchronously in the same basin, <i>S. elunchunorum</i> is regarded here as a junior synonym of <i>A. riabinini</i>. Approximately 70% of the complete <i>Amurosaurus</i> fibulae from the Wulaga bonebed exhibit a total length of more than 85 cm that probably corresponds to the adult stages. Histological sections from these fibulae are moderately remodeled by dense secondary osteons, with poorly developed vascularization of primary osteons along fibrolamellar bone in the outer cortex. The phylogenetic analysis of Lambeosaurinae recovers a sister-taxon relationship between <i>Amurosaurus</i> and <i>Lambeosaurus</i>.
DOI: 10.6084/m9.figshare.24480883
title: <b>Revisiting the Global Methane Cycle Through Expert Opinion</b>

description: We developed the written survey questions using the Qualtrics Survey Tool with an enterprise license held by Yale University. We interactively revised background information, response formats, and survey questions based on our discussion with leading scientists in uncertainty quantification and expert opinion analyses. Survey respondents did not include experts involved in survey development or testing. From July to August 2021, the survey questions were further refined for readability, clarity, and scientific rigor following a pilot interview with several early-career scientists.All authors involved in the development of the survey completed human subjects’ protection training offered at Yale University. The survey was approved by the Yale University Institutional Review Board (Yale IRB) and included a risk statement as follows: “You will not directly benefit from participation in this research study, but we hope that the input we receive from all our experts will advance public policy in this area. Your responses will not be linked to your name. Your participation in this study is completely voluntary and the limited amount of personal information collected will be dissociated with your answers prior to data analysis. We are required to inform you that the only risk the Yale IRB review has identified is a possible loss of confidentiality of your answers.”The survey was finally distributed to experts through emails on 19 August 2021 with an accessible link and closed on 31 December 2021. To better help survey participants access all information and questions while filling out the survey, we also distributed a pdf document containing the questionnaires (Supplementary information). The final survey consists of three sections: Introduction, Pre-survey, and the Main Questionnaire containing 16 questions related to uncertainties in the global methane budget. The questionnaire includes a mix of quantitative survey questions to answer initial research and qualitative survey questions that are open-ended and designed to uncover thoughts and opinions. This Excel data sheet includes anonymous survey data
DOI: 10.6084/m9.figshare.12421730.v1
title: Additional file 1 of Application of diffusion tensor imaging and blood oxygenation level-dependent magnetic resonance imaging to assess bilateral renal function induced by Iohexol in rabbits

description: Additional file 1. Raw data of R2*, ADC and FA values of bilateral renal cortex, outer medulla and inner medulla (n = 6).
DOI: 10.6084/m9.figshare.20286358
title: Osteological and taxonomic reassessments of <i>Sahaliyania elunchunorum</i> (Dinosauria, Hadrosauridae) from the Upper Cretaceous Yuliangzi Formation, northeast China

description: The osteology and taxonomy of the lambeosaurine <i>Sahaliyania elunchunorum</i> from the upper Yuliangzi Formation (middle Maastrichtian) are reevaluated herein. Based on detailed morphological comparisons among hadrosauroids, we argue that Wulaga lambeosaurine specimens, most of which were previously ascribed to <i>S. elunchunorum</i>, display a combination of features that is typical of <i>Amurosaurus riabinini</i> from the upper Udurchukan Formation (middle Maastrichtian) at the Blagoveschensk locality. This combination includes several anterodorsally-posteroventrally oriented lateral foramina of the maxilla with a very large last one partially obscured by the ventral extremity of the jugal contact, a narrow infratemporal region of the jugal that is ∼70% as wide as the orbit, a relatively low anterior third of the strongly dorsally concave sagittal crest of the parietal, mesiodistally wide maxillary tooth crowns (∼1.2–1.3 teeth per cm), the sternal posterolateral process slightly shorter than the anteromedial plate, and a gently ventrally deflected preacetabular process of the ilium. Considering the osteological similarities and the fact that the Yuliangzi and Udurchukan formations were deposited synchronously in the same basin, <i>S. elunchunorum</i> is regarded here as a junior synonym of <i>A. riabinini</i>. Approximately 70% of the complete <i>Amurosaurus</i> fibulae from the Wulaga bonebed exhibit a total length of more than 85 cm that probably corresponds to the adult stages. Histological sections from these fibulae are moderately remodeled by dense secondary osteons, with poorly developed vascularization of primary osteons along fibrolamellar bone in the outer cortex. The phylogenetic analysis of Lambeosaurinae recovers a sister-taxon relationship between <i>Amurosaurus</i> and <i>Lambeosaurus</i>.
DOI: 10.6084/m9.figshare.12421808
title: Additional file 1 of QTL mapping of web blotch resistance in peanut by high-throughput genome-wide sequencing

description: Additional file 1: Table S1. The summary information of the sequencing and alignment results.
DOI: 10.6084/m9.figshare.17140507
title: Additional file 4 of MicroRNA signatures in plasma and plasma exosome during window of implantation for implantation failure following in-vitro fertilization and embryo transfer

description: Additional file 4: Supplementary Table 3. KEGG pathway enrichment analysis of target genes of the 12 known differently expressed miRNAs.
DOI: 10.6084/m9.figshare.17140693.v1
title: Additional file 5 of High expression of eIF4E is associated with tumor macrophage infiltration and leads to poor prognosis in breast cancer

description: Additional file 5: Table S2. eIF4E co expressed differential genes.
DOI: 10.6084/m9.figshare.17140702.v1
title: Additional file 7 of High expression of eIF4E is associated with tumor macrophage infiltration and leads to poor prognosis in breast cancer

description: Additional file 7: Table S4. Enrichment analysis of eIF4E co-expression gene KEGG.
DOI: 10.6084/m9.figshare.17140708.v1
title: Additional file 8 of High expression of eIF4E is associated with tumor macrophage infiltration and leads to poor prognosis in breast cancer

description: Additional file 8: Table S5. eIF4E co-expression of PPI network in breast.
DOI: 10.6084/m9.figshare.17140711
title: Additional file 9 of High expression of eIF4E is associated with tumor macrophage infiltration and leads to poor prognosis in breast cancer

description: Additional file 9: Table S6. eIF4E co-expression TF-miRNA network.
DOI: 10.6084/m9.figshare.17140687
title: Additional file 4 of High expression of eIF4E is associated with tumor macrophage infiltration and leads to poor prognosis in breast cancer

description: Additional file 4: Table S1. Geo database data set GSE109169 differentially expressed genes.
DOI: 10.6084/m9.figshare.17140702
title: Additional file 7 of High expression of eIF4E is associated with tumor macrophage infiltration and leads to poor prognosis in breast cancer

description: Additional file 7: Table S4. Enrichment analysis of eIF4E co-expression gene KEGG.
DOI: 10.6084/m9.figshare.17140501
title: Additional file 3 of MicroRNA signatures in plasma and plasma exosome during window of implantation for implantation failure following in-vitro fertilization and embryo transfer

description: Additional file 3: Supplementary Table 2. Differentially expressed miRNAs in plasma exosomes between the IF group and CP group.
DOI: 10.6084/m9.figshare.17140687.v1
title: Additional file 4 of High expression of eIF4E is associated with tumor macrophage infiltration and leads to poor prognosis in breast cancer

description: Additional file 4: Table S1. Geo database data set GSE109169 differentially expressed genes.
DOI: 10.6084/m9.figshare.17140510.v1
title: Additional file 5 of MicroRNA signatures in plasma and plasma exosome during window of implantation for implantation failure following in-vitro fertilization and embryo transfer

description: Additional file 5: Supplementary Table 4. Result of hub genes in pink module.
DOI: 10.6084/m9.figshare.17140711.v1
title: Additional file 9 of High expression of eIF4E is associated with tumor macrophage infiltration and leads to poor prognosis in breast cancer

description: Additional file 9: Table S6. eIF4E co-expression TF-miRNA network.
DOI: 10.6084/m9.figshare.17140699
title: Additional file 6 of High expression of eIF4E is associated with tumor macrophage infiltration and leads to poor prognosis in breast cancer

description: Additional file 6: Table S3. eIF4E co-expression gene GO_BP enrichment analysis.
DOI: 10.6084/m9.figshare.17140699.v1
title: Additional file 6 of High expression of eIF4E is associated with tumor macrophage infiltration and leads to poor prognosis in breast cancer

description: Additional file 6: Table S3. eIF4E co-expression gene GO_BP enrichment analysis.
DOI: 10.6084/m9.figshare.12421808.v1
title: Additional file 1 of QTL mapping of web blotch resistance in peanut by high-throughput genome-wide sequencing

description: Additional file 1: Table S1. The summary information of the sequencing and alignment results.
DOI: 10.6084/m9.figshare.16616659
title: Processed data and R program

description: a flux calculator of the non-steady-state chamber method, which can be used to estimate fluxes of three major greenhouse gases (CH4、CO2、N2O).
DOI: 10.6084/m9.figshare.8228075
title: MOESM5 of Proteome analysis of xylose metabolism in Rhodotorula toruloides during lipid production

description: Additional file 5. Relative levels of differentially expressed proteins in R. toruloides cultivated on either glucose or xylose during early exponential growth phase.
DOI: 10.6084/m9.figshare.8228096
title: MOESM8 of Proteome analysis of xylose metabolism in Rhodotorula toruloides during lipid production

description: Additional file 8. Relative levels of proteins involved in central carbon metabolism of R. toruloides.
DOI: 10.6084/m9.figshare.12422243.v1
title: Additional file 1 of iTRAQ-based quantitative proteomics analysis of cantaloupe (Cucumis melo var. saccharinus) after cold storage

description: Additional file 1: Table S1. Proteins in GE and JS identified by iTRAQ labeling.
DOI: 10.5281/zenodo.10682909
title: Paper-based Electrochemical Device for Early Detection of Integrin αvβ6 Expressing Tumors
DOI: 10.5281/zenodo.10682910
title: Paper-based Electrochemical Device for Early Detection of Integrin αvβ6 Expressing Tumors
DOI: 10.6084/m9.figshare.15567654
title: Additional file 2 of Mechanism of interaction between virus and host is inferred from the changes of gene expression in macrophages infected with African swine fever virus CN/GS/2018 strain

description: Additional file 2. ASFV 12h vs. MOCK 12h. Information of differentially expressed genes at 12 hpi.
DOI: 10.6084/m9.figshare.17140693
title: Additional file 5 of High expression of eIF4E is associated with tumor macrophage infiltration and leads to poor prognosis in breast cancer

description: Additional file 5: Table S2. eIF4E co expressed differential genes.
DOI: 10.6084/m9.figshare.12422243
title: Additional file 1 of iTRAQ-based quantitative proteomics analysis of cantaloupe (Cucumis melo var. saccharinus) after cold storage

description: Additional file 1: Table S1. Proteins in GE and JS identified by iTRAQ labeling.
DOI: 10.6084/m9.figshare.17140708
title: Additional file 8 of High expression of eIF4E is associated with tumor macrophage infiltration and leads to poor prognosis in breast cancer

description: Additional file 8: Table S5. eIF4E co-expression of PPI network in breast.
DOI: 10.6084/m9.figshare.12422252
title: Additional file 3 of iTRAQ-based quantitative proteomics analysis of cantaloupe (Cucumis melo var. saccharinus) after cold storage

description: Additional file 3: Table S3. Clusters of Orthologous Groups of proteins (COG) annotation of DEPs in GE and JS after cold treatment.
DOI: 10.6084/m9.figshare.12422255.v1
title: Additional file 4 of iTRAQ-based quantitative proteomics analysis of cantaloupe (Cucumis melo var. saccharinus) after cold storage

description: Additional file 4: Table S4. Gene Ontology (GO) annotation of DEPs in GE and JS after cold treatment.
DOI: 10.6084/m9.figshare.12422249.v1
title: Additional file 2 of iTRAQ-based quantitative proteomics analysis of cantaloupe (Cucumis melo var. saccharinus) after cold storage

description: Additional file 2: Table S2. Identified DEPs from GE and JS after cold treatment (P &lt; 0.05).
DOI: 10.6084/m9.figshare.12422270
title: Additional file 7 of iTRAQ-based quantitative proteomics analysis of cantaloupe (Cucumis melo var. saccharinus) after cold storage

description: Additional file 7: Table S6. The list of identified differentially expressed metabolites in GE and JS after cold treatment.
DOI: 10.6084/m9.figshare.15567654.v1
title: Additional file 2 of Mechanism of interaction between virus and host is inferred from the changes of gene expression in macrophages infected with African swine fever virus CN/GS/2018 strain

description: Additional file 2. ASFV 12h vs. MOCK 12h. Information of differentially expressed genes at 12 hpi.
DOI: 10.6084/m9.figshare.17140918
title: Additional file 10 of Repression of the expression of proinflammatory genes by mitochondrial transcription factor A is linked to its alternative splicing regulation in human lung epithelial cells

description: Additional file 10. The motif analysis.
DOI: 10.6084/m9.figshare.12422258
title: Additional file 5 of iTRAQ-based quantitative proteomics analysis of cantaloupe (Cucumis melo var. saccharinus) after cold storage

description: Additional file 5: Table S5. Kyoto Encyclopedia of Genes and Genomes (KEGG) annotation of DEPs in GE and JS after cold treatment.
DOI: 10.6084/m9.figshare.17140945.v1
title: Additional file 7 of Repression of the expression of proinflammatory genes by mitochondrial transcription factor A is linked to its alternative splicing regulation in human lung epithelial cells

description: Additional file 7. Statistics and classification of known and novel alternative splcing events.
DOI: 10.6084/m9.figshare.12422249
title: Additional file 2 of iTRAQ-based quantitative proteomics analysis of cantaloupe (Cucumis melo var. saccharinus) after cold storage

description: Additional file 2: Table S2. Identified DEPs from GE and JS after cold treatment (P &lt; 0.05).
DOI: 10.6084/m9.figshare.12422258.v1
title: Additional file 5 of iTRAQ-based quantitative proteomics analysis of cantaloupe (Cucumis melo var. saccharinus) after cold storage

description: Additional file 5: Table S5. Kyoto Encyclopedia of Genes and Genomes (KEGG) annotation of DEPs in GE and JS after cold treatment.
DOI: 10.6084/m9.figshare.12422252.v1
title: Additional file 3 of iTRAQ-based quantitative proteomics analysis of cantaloupe (Cucumis melo var. saccharinus) after cold storage

description: Additional file 3: Table S3. Clusters of Orthologous Groups of proteins (COG) annotation of DEPs in GE and JS after cold treatment.
DOI: 10.6084/m9.figshare.12422255
title: Additional file 4 of iTRAQ-based quantitative proteomics analysis of cantaloupe (Cucumis melo var. saccharinus) after cold storage

description: Additional file 4: Table S4. Gene Ontology (GO) annotation of DEPs in GE and JS after cold treatment.
DOI: 10.6084/m9.figshare.15567675.v1
title: Additional file 3 of Mechanism of interaction between virus and host is inferred from the changes of gene expression in macrophages infected with African swine fever virus CN/GS/2018 strain

description: Additional file 3. ASFV 24h vs. MOCK 24h. Information of differentially expressed genes at 24 hpi.
DOI: 10.6084/m9.figshare.17140927.v1
title: Additional file 2 of Repression of the expression of proinflammatory genes by mitochondrial transcription factor A is linked to its alternative splicing regulation in human lung epithelial cells

description: Additional file 2. Primers of the genes validated by RT-qPCR.
DOI: 10.6084/m9.figshare.12422333
title: Additional file 2 of Adipose mesenchymal stem cell transplantation alleviates spinal cord injury-induced neuroinflammation partly by suppressing the Jagged1/Notch pathway

description: Additional file 2: Figure S1. The effect of Jagged1/Notch pathway on inflammation and apoptosis in ADSC co-cultured with neuronal cells.