cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3796915_d13
title: Additional file 7: Table S6. of Improved detection of gene-microbe interactions in the mouse skin microbiota using high-resolution QTL mapping of 16S rRNA transcripts

description: Estimates of proportions of explained variance by explanatory variables for genus- to phylum-level taxa (RNA). Estimates for random components (cage and residual) and fixed terms (gender and age) are calculated for each of the CMM taxa log10-relative abundances and alpha diversity indices as profiled based on RNA in G15 (n = 270). When taxa are redundant, only the lowest rank is shown. Un: unclassified. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3796915_d14
title: Additional file 8: Table S7. of Improved detection of gene-microbe interactions in the mouse skin microbiota using high-resolution QTL mapping of 16S rRNA transcripts

description: Estimates of proportions of explained variance by explanatory variables for OTUs (DNA). Estimates for random components (cage and residual) and fixed terms (gender and age) are calculated for each of the CMM OTUs log10-relative abundances and alpha diversity indices as profiled based on DNA in G15 (n = 270). When taxa are redundant, only the lowest rank is shown. Un: unclassified. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3796954_d6
title: Additional file 6: of Analysis of the lipid body proteome of the oleaginous alga Lobosphaera incisa

description: Hypocotyl measurements used for calculating the effect of transgenes on postgerminative growth. Individual hypocotyl lengths are listed along with calculations for Figs. 6 and 8. EVCÂ =Â Empty vector control. (XLSX 76Â kb)
DOI: 10.6084/m9.figshare.c.3796936_d10.v1
title: Additional file 9: of Symbionts in waiting: the dynamics of incipient endosymbiont complementation and replacement in minimal bacterial communities of psyllids

description: Normalised qPCR results (XLSX 14 kb).
DOI: 10.6084/m9.figshare.c.3796954_d7
title: Additional file 7: of Analysis of the lipid body proteome of the oleaginous alga Lobosphaera incisa

description: Quantification of total fatty acids in complemented A. thaliana lines. GC measurements of seeds and seedlings for Fig. 8c are shown. (XLSX 127Â kb)
DOI: 10.6084/m9.figshare.c.3796915_d15.v1
title: Additional file 9: Table S8. of Improved detection of gene-microbe interactions in the mouse skin microbiota using high-resolution QTL mapping of 16S rRNA transcripts

description: Estimates of proportions of explained variance by explanatory variables for OTUs (RNA). Estimates of proportions of explained variance by random components (cage and residual) and fixed terms (gender and age) are calculated for each of the CMM OTUs log10-relative abundances and alpha diversity indices as profiled based on RNA in G15 (n = 270). When taxa are redundant, only the lowest rank is shown. Un: unclassified. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3796915_d15
title: Additional file 9: Table S8. of Improved detection of gene-microbe interactions in the mouse skin microbiota using high-resolution QTL mapping of 16S rRNA transcripts

description: Estimates of proportions of explained variance by explanatory variables for OTUs (RNA). Estimates of proportions of explained variance by random components (cage and residual) and fixed terms (gender and age) are calculated for each of the CMM OTUs log10-relative abundances and alpha diversity indices as profiled based on RNA in G15 (n = 270). When taxa are redundant, only the lowest rank is shown. Un: unclassified. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3796936_d10
title: Additional file 9: of Symbionts in waiting: the dynamics of incipient endosymbiont complementation and replacement in minimal bacterial communities of psyllids

description: Normalised qPCR results (XLSX 14 kb).
DOI: 10.6084/m9.figshare.c.3796960_d1.v1
title: MOESM1 of The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching

description: Additional file 1. Zip file with the source code of the benchmarks.
DOI: 10.6084/m9.figshare.c.3796960_d1
title: MOESM1 of The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching

description: Additional file 1. Zip file with the source code of the benchmarks.
DOI: 10.6084/m9.figshare.c.3798070_d1
title: Additional file 1: of What's your neural function, visual narrative conjunction? Grammar, meaning, and fluency in sequential image processing

description: Available data. (CSV 53Â kb)
DOI: 10.15468/dl.dud5fw
title: Occurrence Download

description: A dataset containing 21326 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carcharhinus limbatus (Müller & Henle, 1839)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 21326 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039216-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3798073_d1.v1
title: Additional file 1: of The influence of climatic factors on the development of hemorrhagic fever with renal syndrome and leptospirosis during the peak season in Korea: an ecologic study

description: Monthly sum of HFRS and leptospirosis cases with climate variables in Korea. (XLSX 658 kb)
DOI: 10.6084/m9.figshare.c.3798073_d1
title: Additional file 1: of The influence of climatic factors on the development of hemorrhagic fever with renal syndrome and leptospirosis during the peak season in Korea: an ecologic study

description: Monthly sum of HFRS and leptospirosis cases with climate variables in Korea. (XLSX 658 kb)
DOI: 10.6084/m9.figshare.c.3798088_d1.v1
title: Additional file 1: of Clinical safety and efficacy of vitamin D3 analog ointment for treatment of obstructive meibomian gland dysfunction

description: Detailed data of the subjects at pre-, one months after and two months after treatment with Vit D3. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3798088_d1
title: Additional file 1: of Clinical safety and efficacy of vitamin D3 analog ointment for treatment of obstructive meibomian gland dysfunction

description: Detailed data of the subjects at pre-, one months after and two months after treatment with Vit D3. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3798097_d1.v1
title: Additional file 1: of Custom-made foot orthoses: an analysis of prescription characteristics from an Australian commercial orthotic laboratory

description: Stereolithography (STL) file of cluster 1 orthosis. To view the 3D model, download the file and drag and drop at http://www.viewstl.com /. (STL 823Â kb)
DOI: 10.6084/m9.figshare.c.3798097_d1
title: Additional file 1: of Custom-made foot orthoses: an analysis of prescription characteristics from an Australian commercial orthotic laboratory

description: Stereolithography (STL) file of cluster 1 orthosis. To view the 3D model, download the file and drag and drop at http://www.viewstl.com /. (STL 823Â kb)
DOI: 10.6084/m9.figshare.c.3798097_d2.v1
title: Additional file 2: of Custom-made foot orthoses: an analysis of prescription characteristics from an Australian commercial orthotic laboratory

description: Stereolithography (STL) file of cluster 2 orthosis. To view the 3D model, download the file and drag and drop at http://www.viewstl.com /. (STL 634Â kb)
DOI: 10.6084/m9.figshare.c.3798205_d3.v1
title: Additional file 3: of 
                     Ixora (Rubiaceae) on the Philippines - crossroad or cradle?

description: Overview and detailed list of riboâ  /haplotypes resulting from the tree inferences and median-joining analyses (XLSX 103 kb)
DOI: 10.6084/m9.figshare.c.3798205_d3
title: Additional file 3: of 
                     Ixora (Rubiaceae) on the Philippines - crossroad or cradle?

description: Overview and detailed list of riboâ  /haplotypes resulting from the tree inferences and median-joining analyses (XLSX 103 kb)
DOI: 10.6084/m9.figshare.c.3799360_d2.v1
title: Additional file 2: of Distinct DNA methylation profiles in subtypes of orofacial cleft

description: Additional tables. Table S1: EWAS results for CpGs differentially methylated in the CPOvsCLO comparison with Bonferroni P value &lt;0.05. Table S2: EWAS results for CpGs differentially methylated in association with age at sampling with an uncorrected P value &lt;0.05. Table S3: Differentially methylated regions (DMRs). Table S4: Top 5 GO terms and KEGG pathways for CpGs in DMRs. Table S5: Genes that have previously been implicated in OFCs (in DisGeNET as of January 2017 and in a bioinformatics study by Funato et al., 2017). (XLSX 3061Â kb)
DOI: 10.6084/m9.figshare.c.3799360_d2
title: Additional file 2: of Distinct DNA methylation profiles in subtypes of orofacial cleft

description: Additional tables. Table S1: EWAS results for CpGs differentially methylated in the CPOvsCLO comparison with Bonferroni P value &lt;0.05. Table S2: EWAS results for CpGs differentially methylated in association with age at sampling with an uncorrected P value &lt;0.05. Table S3: Differentially methylated regions (DMRs). Table S4: Top 5 GO terms and KEGG pathways for CpGs in DMRs. Table S5: Genes that have previously been implicated in OFCs (in DisGeNET as of January 2017 and in a bioinformatics study by Funato et al., 2017). (XLSX 3061Â kb)
DOI: 10.6084/m9.figshare.c.3799360_d3.v1
title: Additional file 3: of Distinct DNA methylation profiles in subtypes of orofacial cleft

description: Full EWAS results for CLOvsCLP in blood. (RDS 18.9 mb)
DOI: 10.6084/m9.figshare.c.3799360_d3
title: Additional file 3: of Distinct DNA methylation profiles in subtypes of orofacial cleft

description: Full EWAS results for CLOvsCLP in blood. (RDS 18.9 mb)
DOI: 10.6084/m9.figshare.c.3799360_d4.v1
title: Additional file 4: of Distinct DNA methylation profiles in subtypes of orofacial cleft

description: Full EWAS results for CPOvsCLP in blood. (RDS 18.9 mb)
DOI: 10.15468/dl.aefbrj
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anisandrus dispar Hulcr, Dole, Beaver & Cognato, 2007",
 "Year 2000-2024"
 ]
}

 The dataset includes 72 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039219-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nz3tc2
title: Occurrence Download

description: A dataset containing 21906 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carcharhinus plumbeus (Nardo, 1827)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 21906 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039217-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3801355_d7
title: MOESM6 of Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes

description: Additional file 7. Raw data contact frequencies over the entire genome.
DOI: 10.15468/dl.nmb4nq
title: Occurrence Download

description: A dataset containing 26572 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Asimina triloba (L.) Dunal"
 ]
}

 The dataset includes 26572 records from 135 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028346-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3802534_d1
title: Additional file 1: Table S1. of Multiple biomarkers predict disease severity, progression and mortality in COPD

description: Association Between Biomarkers and COPD Outcomes. Table S2. Statistical Models. Table S3. Demographics of Subjects at Baseline: COPDGene Cohort*. Table S4. Demographics of Subjects at Baseline: ECLIPSE Cohort*. Table S5. Analysis of COPDGene cohort. Grey shading indicates each model with lines for each biomarker in that model. Columns are beta coefficient in model (B), odds ratio, standard error (SE), correlation coefficient (R2) or pseudo R2 Cragg and Uhlerâ  s (CU) or R2m (the marginal portion of the R2), Akaike Information Criteria (AIC), and number of subjects analyzed (N). The type of model is listed on top right of table. The best model highlighted in yellow. Table S6. Analysis of ECLIPSE cohort. Best model in ECLIPSE cohort highlighted in yellow. Grey shading indicates each model with lines for each biomarker in that model. Columns are beta coefficient in model (B), odds ratio, standard error (SE), correlation coefficient (R2) or pseudo R2 Cragg and Uhlerâ  s (CU) or R2m (the marginal portion of the R2), Akaike Information Criteria (AIC), and number of subjects analyzed (N). The type of model is listed on top right of table. Best model in COPDGene cohort in red font. Table S7. Biomarkers Associated with FEV1/FVC. Table S8. Biomarkers Associated with (A) Total (Moderate and Severe) Exacerbations and (B) Severe Exacerbations in the Previous 12 Months. Table S9. Biomarkers Associated with (A) Prospective Total (Moderate and Severe) Exacerbations or (B) Prospective Severe Exacerbations. Table S10. Enrollment Centers. Table S11. Baseline Characteristics of Subjects with Biomarker Data Compared with Entire COPDGene Cohort. Table S12. Correlation Between Biomarkers. Table S13. Biomarkers Associated with Mortality. Analysis of COPDGene and ECLIPSE cohorts by C-statistic. Covariates were BODE, age, age2, gender, and severe exacerbations. (ZIP 485 kb)
DOI: 10.15468/dl.x469bf
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dendroctonus brevicomis LeConte, 1876",
 "Year 2000-2024"
 ]
}

 The dataset includes 96 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039221-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ahu64b
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Careproctus colletti Gilbert, 1896",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039222-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3803623_d2.v1
title: MOESM2 of Comparative evaluation of atom mapping algorithms for balanced metabolic reactions: application to Recon 3D

description: Additional file 2. Contains the full comparison after the algorithmic and manual check of the of reactions. Full-atom mapping comparison table. With all standardised reactions, RXN file atom identifiers were extracted as an array and processed in MATLAB where they were compared if the reaction was present in the database. Comparisons were made with the following order: 1) cured reactions, 2) DREAM, 3) AutoMapper, 4) CLCA 5) MWED, and 6) ICMAP. In the curated reactions column, there are only two values, 1 or NaN if there was no file. DREAM columncould have 3 values 1 if equal than the curated reactions, 2 if are not equal and NaN if the le does not exist. AutoMapper column has 4 values, 1–3 and NaN. 1 if is equal to curated files, 2 if the mappings are equal to DREAM and 3 if they are not equal to the curated DREAM reactions and NaN if not file existed. So CLCA 1–4 and NaN, MWED 1–5 and NaN, and NaN ICMAP 1–6. If all reactions are equal, all columns 1 values obtained. With the matrix containing all the comparisons similarity of all algorithms was calculated.
DOI: 10.6084/m9.figshare.c.3803626_d2.v1
title: Additional file 2: of CRISPR/Cas9-mediated genome editing induces exon skipping by alternative splicing or exon deletion

description: Supplemental Table 4. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3803629_d2.v1
title: Additional file 2: of Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification

description: Phylogenomic analysis. Full data associated with the 383 ohnologue gene trees used to define LORe and AORe regions, including: (i) NCBI accession number and gene/protein details for sequence capture probes, (ii) genomic location of ohnologues in the Atlantic salmon genome, (iii) the length of each sequence alignment, (iv) the substitution model used for Bayesian phylogenetic analysis, (iv) the number of inferred rediploidization events (v), each gene tree (nexus format), and (vi) alignments used to generate each gene tree (fasta format). (XLSX 1984 kb)
DOI: 10.6084/m9.figshare.c.3803623_d2
title: MOESM2 of Comparative evaluation of atom mapping algorithms for balanced metabolic reactions: application to Recon 3D

description: Additional file 2. Contains the full comparison after the algorithmic and manual check of the of reactions. Full-atom mapping comparison table. With all standardised reactions, RXN file atom identifiers were extracted as an array and processed in MATLAB where they were compared if the reaction was present in the database. Comparisons were made with the following order: 1) cured reactions, 2) DREAM, 3) AutoMapper, 4) CLCA 5) MWED, and 6) ICMAP. In the curated reactions column, there are only two values, 1 or NaN if there was no file. DREAM columncould have 3 values 1 if equal than the curated reactions, 2 if are not equal and NaN if the le does not exist. AutoMapper column has 4 values, 1–3 and NaN. 1 if is equal to curated files, 2 if the mappings are equal to DREAM and 3 if they are not equal to the curated DREAM reactions and NaN if not file existed. So CLCA 1–4 and NaN, MWED 1–5 and NaN, and NaN ICMAP 1–6. If all reactions are equal, all columns 1 values obtained. With the matrix containing all the comparisons similarity of all algorithms was calculated.
DOI: 10.6084/m9.figshare.c.3803629_d2
title: Additional file 2: of Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification

description: Phylogenomic analysis. Full data associated with the 383 ohnologue gene trees used to define LORe and AORe regions, including: (i) NCBI accession number and gene/protein details for sequence capture probes, (ii) genomic location of ohnologues in the Atlantic salmon genome, (iii) the length of each sequence alignment, (iv) the substitution model used for Bayesian phylogenetic analysis, (iv) the number of inferred rediploidization events (v), each gene tree (nexus format), and (vi) alignments used to generate each gene tree (fasta format). (XLSX 1984 kb)
DOI: 10.6084/m9.figshare.c.3803626_d2
title: Additional file 2: of CRISPR/Cas9-mediated genome editing induces exon skipping by alternative splicing or exon deletion

description: Supplemental Table 4. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3803623_d3
title: MOESM3 of Comparative evaluation of atom mapping algorithms for balanced metabolic reactions: application to Recon 3D

description: Additional file 3. Contains two folders, one contains the predictions obtained from each algorithm in RXN format (Folder: algorithmicPredictions), the other contains manually curated atom mappings, (Folder:standardisedPredictions).
DOI: 10.6084/m9.figshare.c.3803629_d4.v1
title: Additional file 4: of Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification

description: Ohnologue GO enrichment analyses. Full enrichment data for GO terms belonging to the sub-ontology â  biological processâ  , done comparing protein-coding ohnologues located in LORe and AORe regions. (XLSX 7524 kb)
DOI: 10.6084/m9.figshare.c.3804547_d1.v1
title: Additional file 1: of Molecular typing of Leptospira interrogans serovar Hardjo isolates from leptospirosis outbreaks in Brazilian livestock

description: Leptospira spp. strains used in MAT and PCR analysis. (XLS 34 kb)
DOI: 10.6084/m9.figshare.c.3804547_d1
title: Additional file 1: of Molecular typing of Leptospira interrogans serovar Hardjo isolates from leptospirosis outbreaks in Brazilian livestock

description: Leptospira spp. strains used in MAT and PCR analysis. (XLS 34 kb)
DOI: 10.6084/m9.figshare.c.3804565_d1.v1
title: Additional file 1: Table S1. of Environmental isolation explains Iberian genetic diversity in the highly homozygous model grass Brachypodium distachyon

description: Genotypes of the studied Spanish Brachypodium distachyon individuals based on nSSR analysis (TXT 12 kb)
DOI: 10.6084/m9.figshare.c.3804625_d1.v1
title: Additional file 1: Table S1. of HGPEC: a Cytoscape app for prediction of novel disease-gene and disease-disease associations and evidence collection based on a random walk on heterogeneous network

description: All collected annotations and evidences for associations between top 20 ranked candidate genes and breast cancer. (TXT 622 kb)
DOI: 10.6084/m9.figshare.c.3804625_d2.v1
title: Additional file 2: Table S2. of HGPEC: a Cytoscape app for prediction of novel disease-gene and disease-disease associations and evidence collection based on a random walk on heterogeneous network

description: All collected annotations and evidences for associations between top 20 ranked candidate diseases and breast cancer. (TXT 278 kb)
DOI: 10.6084/m9.figshare.c.3804625_d1
title: Additional file 1: Table S1. of HGPEC: a Cytoscape app for prediction of novel disease-gene and disease-disease associations and evidence collection based on a random walk on heterogeneous network

description: All collected annotations and evidences for associations between top 20 ranked candidate genes and breast cancer. (TXT 622 kb)
DOI: 10.6084/m9.figshare.c.3804625_d2
title: Additional file 2: Table S2. of HGPEC: a Cytoscape app for prediction of novel disease-gene and disease-disease associations and evidence collection based on a random walk on heterogeneous network

description: All collected annotations and evidences for associations between top 20 ranked candidate diseases and breast cancer. (TXT 278 kb)
DOI: 10.15468/dl.67zn6g
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Careproctus cypselurus (Jordan & Gilbert, 1898)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039223-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3804685_d1.v1
title: MOESM1 of A multiplex PCR for rapid identification of Brassica species in the triangle of U

description: Additional file 1: Table S1. Genebank passport information and genotyping results for 120 Brassica accessions.
DOI: 10.6084/m9.figshare.c.3804685_d1
title: MOESM1 of A multiplex PCR for rapid identification of Brassica species in the triangle of U

description: Additional file 1: Table S1. Genebank passport information and genotyping results for 120 Brassica accessions.