cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17882/107355
title: Data inventory of coastal platforms in In Situ Thematic Assembly Center (in situ TAC) from Copernicus Marine Service (CMEMS)

description: As part of the European Horizon Europe FOCCUS project (https://foccus-project.eu/), the metadata inventory of European coastal platforms has been extracted. The inventory was based on the following History and Latest products, downloaded from the CMEMS website (https://marine.copernicus.eu/fr/acces-donnees) at: 1) Global Ocean-In-Situ Near-Real-Time Observation, 2) Atlantic Iberian Biscay Irish Ocean-In-Situ Near Real Time Observations, 3) Mediterranean Sea-In-Situ Near Real Time Observations, 4) Atlantic-European North West Shelf-Ocean In-Situ Near Real Time Observations. To carry out this inventory, it was decided to target only coastal platforms, located less than 200km from the coast and at a depth of less than 400m. For mobile platforms, it was also decided to focus only on the first position in the file. This data must be located within 200 km of the coast and at a depth of less than 400 m. In this inventory, FerryBox platforms have all been considered as coastal platforms. The following platforms were extracted from the products: BO (Bottles), CT (CTD), DB (Drifting Buoys), FB (Ferry Box), GL (Gliders), HF (High Frequency Radar), MO (Mooring), PF (Profiling Float), TG (Tide Gauge) and XB (XBT). Once the metadata had been extracted from the files, duplicates were removed (files with the same names). Duplicate platforms of type _TS_ and _WS_ were merged (date and parameters). Latest‘ files have been merged with ’History" files. Missing metadata have been replaced in the Excel file by ‘Missing Data’. Some old dates were also revised by hand because they had been badly extracted, as well as some institution names that included special characters. Platforms located on estuaries/rivers/lakes/ponds have also been removed by hand. This inventory identified a total of 10,479 coastal platforms.
DOI: 10.17882/107572
title: Catalogs of P-phase and H-wave sources located by the MAHY Autonomous Hydrophones (AuH)

description: Close to Mayotte Island, a small volcano named Fani Maore was discovered in 2019. The sudden seismicity it triggered led to the creation of the REVOSIMA group and cruises, aiming at monitoring the activity of the volcano. Among the deployed sensors, MAHY, a network of four Autonomous Hydrophones (AuH), was deployed in 2020. Hydrophones enable to monitor many sources. Two signals of interest are the pupose of this dataset: P-phases, which are compressional seismic waves generated by earthquakes, and H-waves, which are in this case hydroacoustic signals generated by lava-seawater interaction.
Using the hydroacoustic picking model TiSSNet and the associator TAPAAs, a catalog was automaticaly created for each of these signal types.
DOI: 10.17611/dp/19331687
title: Moment Tensor for May 19, 2021 MW 5.0 (GCMT) SOUTHWEST OF AFRICA
DOI: 10.17882/107587
title: Ocean – sea ice hindcast of the Arctic with NEMO/Si3 at 12th of a degree: brittle versus viscous–plastic rheology, sea ice variables for viscous-plastic run

description: This 1-year long (Eulerian) twin-experiment (1997) has been performed with NEMO (OCE + SI3) version 4.2.2 at 12th of a degree of horizontal resolution and 75 levels for the 3D ocean. One experiment uses the BBM brittle rheology and the other the default aEVP viscous-plastic one. These simulations are forced with the 1-hourly near-surface atmospheric state of the ERA5 reanalysis (ECMWF). Lateral boundary conditions of the computational domain (northern North Atlantic + Arctic ocean) use monthly-averaged data of the GLORYS2v4 ocean reanalysis (CMEMS). 
See Brodeau et al 2024 (https://doi.org/10.5194/gmd-17-6051-2024) for more details about the implementation of the BBM rheology in the sea ice model SI3.
The tar file gathers monthly netcdf files that contains 3-hourly fields of sea-ice parameters, the headers are reproduced in the user manual for a complete description.
DOI: 10.17611/dp/19331693
title: Moment Tensor for May 19, 2021 MW 4.9 (GCMT) NORTH PACIFIC OCEAN
DOI: 10.17611/dp/19331699
title: Moment Tensor for May 19, 2021 MW 5.1 (GCMT) JUJUY PROVINCE, ARGENTINA
DOI: 10.17611/dp/19331705
title: Moment Tensor for May 19, 2021 MW 4.8 (GCMT) YUNNAN, CHINA
DOI: 10.17611/dp/19331711
title: Moment Tensor for May 19, 2021 MW 5.5 (GCMT) SOUTHEAST INDIAN RIDGE
DOI: 10.17611/dp/19331717
title: Moment Tensor for May 19, 2021 MW 5.5 (GCMT) SOUTHERN EAST PACIFIC RISE
DOI: 10.17882/107662
title: Acoustic dataset recorded during a technical trials campaign on the R/V L'Atalante, including numerous marine mammal sound emissions

description: This dataset presents raw acoustic data in WAV format (sampling frequency : 256 kHz) recorded onboard R/V L'Atalante on March 9, 2025, between 12:30 and 16:30 UTC, off the West coast of Guadeloupe (Cruise ESSTECH-AT-2025-1: ship radiated noise measurement).
Ambient noise data recorded on an acoustic recorder submerged 40m below the surface include numerous sound emissions from marine mammals (sperm whales observed visually in the area, other odontocetes and probably distant humpback whales).
DOI: 10.17882/107675
title: Dataset from an in situ mesocosm experiment testing the effects of a marine heatwave on a Mediterranean coastal plankton community

description: Marine heatwaves are projected to increase in frequency and intensity in the Mediterranean Sea under global warming. To assess their effects on the structure and functioning of plankton communities a 20-day in situ mesocosm experiment was conducted in May and June 2019 in the Mediterranean coastal Thau Lagoon (43°24’53’’N, 3°41’16’’E, south of France). A simulated heatwave was applied by increasing the temperature of three mesocosms (HW treatment) by +3 °C for the first 10 days of the experiment, then heating was then turned off for an additional 10 days and the HW mesocosms experienced the same temperature as three other mesocosms (control condition) which remained at natural ambient lagoon temperature for the entire experiment. High-frequency automated sensors in all mesocosms were used to measure dissolved oxygen concentrations and saturations, chlorophyll-a fluorescence, photosynthetically active radiation, salinity, and water temperature. These high-frequency monitoring were complemented by manual daily sampling for nutrients and phytoplankton pigment concentrations. These data allowed the estimation of key functional processes as oxygen concentrations were used to estimate gross primary production (GPP) and community respiration (R), while chlorophyll fluorescence data were used to estimate phytoplankton growth (μ) and loss (l) rates, using the methods of Soulié et al. (2021, 2022). Phytoplankton community composition was assessed based on chemotaxonomic pigment concentrations measured with high performance liquid chromatography and the method of Zapata et al. (2000).
DOI: 10.17611/dp/19331723
title: Moment Tensor for May 20, 2021 MW 5.1 (GCMT) TONGA ISLANDS
DOI: 10.17611/dp/19331729
title: Moment Tensor for May 20, 2021 MW 4.9 (GCMT) SOUTHERN EAST PACIFIC RISE
DOI: 10.17882/107806
title: Observing System Simulation Experiment (OSSE) around Hawai‘i for Sea Surface Height (SSH) reconstruction and separation of balanced motions and internal tides from Nadir and SWOT Altimeters

description: This dataset includes all files related to the Observing System Simulation Experiment (OSSE) around Hawai'i for the Sea Surface Height (SSH) Balanced Motions (BM) and Internal Tides reconstruction and separation using satellite altimetry data, including both SWOT and nadir altimeters. It contains SSH reconstruction results for BM and IT (when available), using the method described in Bellemin-Laponnaz et al. (in preparation), across the configurations: QG/SW (BM and IT separation and reconstruction), QG (BM reconstruction), and QG/SW N (BM and only coherent IT separation and reconstruction).
The SSH observations and reference fields were generated from the MITgcm LLC4320 high-resolution ocean simulation (dataset). 
For more details on the OSSE setup, filtering methodology, and the mapping techniques used for SSH reconstruction, see Bellemin-Laponnaz et al. (in preparation).
DOI: 10.17882/107818
title: ESMERALDAS 3D WAS dataset

description: Ocean Bottom Seismometers of the ESMERALDAS 3D wide-angle seismic experiment (García-Cano et al., 2014; https://agupubs.onlinelibrary.wiley.com/doi/full/10.1002/2012JB009978)
Record sections are in SGY format and reduced to 7 km/s.
Each OBS has individual sections for each geophysical transect of the experiment. File extension contains the transect number of each record at the end: obsdata.21.segy."_11".sgy
Channel 0 is the hydrophone
Channel 1 is the vertical component 
Navigation and receiver coordinates can be extracted from the headers sx,sy,gx,gy, respectively
DOI: 10.17882/107832
title: physical oceanography dataset from mooring line "Ligne Pilote" deployed on mount Stylaster south of New Caledonia

description: The mooring line “Ligne Pilote” was deployed during KASEAOPE-1 (R/V Antea, 2023) and recovered during KASEAOPE-2 (R/V Antea, 2024). This archive contains physical oceanography data from ADCPs, CTDs and Temperature-Pressure sensors.
DOI: 10.17611/dp/19331735
title: Moment Tensor for May 20, 2021 MW 5.6 (GCMT) CROZET ISLANDS REGION
DOI: 10.17611/dp/19331741
title: Moment Tensor for May 20, 2021 MW 5.0 (GCMT) NEW BRITAIN REGION, P.N.G.
DOI: 10.17611/dp/19331747
title: Moment Tensor for May 20, 2021 MW 5.2 (GCMT) NORTHERN CHILE
DOI: 10.17611/dp/19331753
title: Moment Tensor for May 20, 2021 MW 5.0 (GCMT) WEST CHILE RISE
DOI: 10.17611/dp/19331759
title: Moment Tensor for May 20, 2021 MW 5.0 (GCMT) MID-INDIAN RIDGE
DOI: 10.17611/dp/19331765
title: Moment Tensor for May 21, 2021 MW 5.5 (GCMT) SOLOMON ISLANDS
DOI: 10.15468/dl.stn8zy
title: Occurrence Download

description: A dataset containing 580503 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Oxalis acetosella"
 ]
}

 The dataset includes 580503 records from 1392 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004228-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/y4vqh-4j146
title: Bsubtilis_wildtype_168_sacculi

description: Bsubtilis_168_sacculi_withTA
description: <strong>Tilt Series Date:</strong> 2012-09-01</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis</p>
<strong>Strain:</strong> subsp. subtilis str. 168</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> strain from Kit Pogliano at UCSD</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulation media</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
  etl2012-09-01-13_slicer4934.jpg: Unknown filament etl2012-09-01-13_slicer4935.jpg: Unknown etl2012-09-01-13_slicer4936.jpg: Unknown (Chemoreceptor?) etl2012-09-01-13_slicer4938.jpg: REZ etl2012-09-01-13_slicer4940.jpg: Unknown filament
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-09-01-13/rawdata/</p>mj_thin0003.mrc,  Tilt Series (Pixel Size 0.5 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-09-01-13/rawdata/mj_thin0003.mrc"
        > <i class="download icon"></i> Download </a></p>

        mj_thin3_full.rec,  Reconstruction (Pixel Size 2.0 nm), 604.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-09-01-13/3dimage_25659/mj_thin3_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/0ymse-v0e25
title: Hylemonella gracilis

description: flagellar motor
description: <strong>Tilt Series Date:</strong> 2012-09-23</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Hylemonella gracilis</p>
<strong>Strain:</strong> ATCC 19624</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 75.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> RAPTOR</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cell grown 48 hr in Broth 233 at 26°C without antibiotics, Final OD600 < 0.1, Spun down by 1000 rcf for 5 min and concentrated by ~10x for plunge freezing</p>
<strong>Sample Preparation:</strong> Vitrobot setting: 100% humidity, 4 ul sample, 10 nm BSA treated gold, -3 offset, 4 s blot time, no drain, ethane/propane mix</p>
  ycw2012-09-23-20_slicer4529.jpg: Flagella motor ycw2012-09-23-20_slicer4530.jpg: Extracellular vesicles ycw2012-09-23-20_slicer4532.jpg: Nucleoid
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2012-09-23-20/rawdata/</p>20120923_Hylemonella_10004.mrc,  Tilt Series (Pixel Size 0.49 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2012-09-23-20/rawdata/20120923_Hylemonella_10004.mrc"
        > <i class="download icon"></i> Download </a></p>

        20120923_Hylemonella_10004_full.rec,  Reconstruction (Pixel Size 1.96 nm), 441.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2012-09-23-20/3dimage_20897/20120923_Hylemonella_10004_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/exxgv-qd558
title: Myxococcus xanthus delta-tsaP

description: grid box YWC065
description: <strong>Tilt Series Date:</strong> 2013-12-27</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Myxococcus xanthus</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain form Lotte Sogaard-Andersen</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown 48 hr in shaking CTT medium at 30 degrees without antibiotics. OD600=0.7</p>
<strong>Sample Preparation:</strong> Vitrobot settings: 100% humidity, 3µl sample, 10 mg/ml BSA treated gold. -4 offset, 4 sec blot time, 1s drain. Ethane/propane mix. Grid: Quantifoil Cu 2/2 Finder. 10 nm gold beads.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2013-12-27-26/rawdata/</p>20131227_YWC065_10028.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2013-12-27-26/rawdata/20131227_YWC065_10028.mrc"
        > <i class="download icon"></i> Download </a></p>

        20131227_YWC065_10028_part131_20.rec,  Reconstruction (Pixel Size 1.56 nm), 712.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/5sf77-2mg09
title: Myxococcus xanthus DK1622 wt

description: For T4P averaging
description: <strong>Tilt Series Date:</strong> 2013-08-26</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Myxococcus xanthus</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain from Martin Thanbichler</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown 48 hr in CTT medium at 30 degrees without antibiotics. OD600=0.7</p>
<strong>Sample Preparation:</strong> Vitrobot settings: 100% humidity, 3µl sample, 10 mg/ml BSA treated gold. -3 offset, 4 sec blot time, no drain. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2013-08-26-68/rawdata/</p>20130826_DK1622_WT_30009.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2013-08-26-68/rawdata/20130826_DK1622_WT_30009.mrc"
        > <i class="download icon"></i> Download </a></p>

        20130826_DK1622_WT_30009.rec,  Reconstruction (Pixel Size 1.56 nm), 1.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2013-08-26-68/3dimage_30250/20130826_DK1622_WT_30009.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/317t6-sch78
title: SS214

description: SS214: Caulobacter stalkband mutant (overexpression of StpAB)CB15N CC2476::CC2476-mcherry) pPxyl-CC2477-CC2476, kanR
description: <strong>Tilt Series Date:</strong> 2012-06-08</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -12.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Martin Thanbichler</p>
<strong>Purification / Growth Conditions / Treatment:</strong> grown overnight in PYE. Diluted 1/20 in M2G-P + 0.3% and grown for 76 hours at 30 degrees.</p>
<strong>Sample Preparation:</strong> COncentrated at 4000 x G for 5 min.Plunge frozen in ethane propane mix.</p>
  aba2012-06-08-1_slicer10102.jpg: Caulobacter crescentus .  filament
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2012-06-08-1/rawdata/</p>SS214_1.mrc,  Tilt Series (Pixel Size 0.78 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2012-06-08-1/rawdata/SS214_1.mrc"
        > <i class="download icon"></i> Download </a></p>

        SS214_1_part122_4.rec,  Reconstruction (Pixel Size 1.56 nm), 516.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2012-06-08-1/3dimage_18981/SS214_1_part122_4.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/6egyr-1ta81
title: Hylemonella gracilis

description: nucleoid filament, flagellar motor, chemoreceptor array
description: <strong>Tilt Series Date:</strong> 2012-09-23</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Hylemonella gracilis</p>
<strong>Strain:</strong> ATCC 19624</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 75.0 eV/Å²,  defocus: -15.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> RAPTOR</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cell grown 48 hr in Broth 233 at 26°C without antibiotics, Final OD600 < 0.1, Spun down by 1000 rcf for 5 min and concentrated by ~10x for plunge freezing</p>
<strong>Sample Preparation:</strong> Vitrobot setting: 100% humidity, 4 ul sample, 10 nm BSA treated gold, -3 offset, 4 s blot time, no drain, ethane/propane mix</p>
  ycw2012-09-23-36_slicer4939.jpg: chemoreceptor array ycw2012-09-23-36_slicer4943.jpg: Nucleoid
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2012-09-23-36/rawdata/</p>20120923_Hylemonella_20009.mrc,  Tilt Series (Pixel Size 0.49 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2012-09-23-36/rawdata/20120923_Hylemonella_20009.mrc"
        > <i class="download icon"></i> Download </a></p>

        20120923_Hylemonella_20009_full.rec,  Reconstruction (Pixel Size 1.96 nm), 441.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2012-09-23-36/3dimage_20925/20120923_Hylemonella_20009_full.rec"
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DOI: 10.5281/zenodo.16990534
title: code
DOI: 10.5281/zenodo.16990535
title: code