cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5151622
title: EVI MAIAC over the Amazon Forests filtered by Fourier Transform

description: Inter-annual monthly mean values of the enhanced vegetation index (EVI) over the Amazon forest obtained by the Moderate Resolution Imaging Spectroradiometer (MODIS) sensor, on board the Terra and Aqua satellites (EOS AM, NASA); processed with multiangle implementation of atmospheric correction algorithm (MAIAC) and filtered using the Fourier Transform (FT) to keep only the annual and bis-annual frequencies that compose the EVI signal.The image is a .tif with 12 bands corresponding to the month of the year (first is january)
DOI: 10.6084/m9.figshare.5153824
title: Normalized litterfall measurements for 16 Amazon forest studiy sites

description: Monthly litterfall productivity measurements (Normalized be the mean and standard deviation) for 16 study sites in the Amazon forest. The dataset contains Latitude (lat), Longitude (lon), site name (site), enhanced vegetaiton index, normalized by mean and SD (EVI) and smooth by a spline (EVI_spline); and litterfall, normalized by mean and SD (lit), and smoothed by a spline (lit_spline). For each site, there is 12 values corresponding to the monthly values of litterfall and EVI (the first is january)
DOI: 10.6084/m9.figshare.5154043
title: Data File 1: Calculation method for laser radar cross sections of rotationally symmetric targets

description: Monostatic LRCS of the four kinds of rotational symmetries. Originally published in Applied Optics on 01 July 2017 (ao-56-19-5520)
DOI: 10.6084/m9.figshare.5154046
title: Data File 2: Calculation method for laser radar cross sections of rotationally symmetric targets

description: Effect of incident angle on monostatic LRCS. Originally published in Applied Optics on 01 July 2017 (ao-56-19-5520)
DOI: 10.6084/m9.figshare.5154049
title: Data File 3: Calculation method for laser radar cross sections of rotationally symmetric targets

description: Effect of the five parameters considered on monostatic LRCS. Originally published in Applied Optics on 01 July 2017 (ao-56-19-5520)
DOI: 10.6084/m9.figshare.5154052
title: Data File 4: Calculation method for laser radar cross sections of rotationally symmetric targets

description: Comparisons between the triangular patch method and rotationally symmetric target method for LRCS. Originally published in Applied Optics on 01 July 2017 (ao-56-19-5520)
DOI: 10.6084/m9.figshare.5162089
title: Chemical camouflage: a key process in shaping an ant-treehopper and fig-fig wasp mutualistic network

description: <b>Digital appendi</b><b>x 1:</b> Tending
behavior of weaver ants, <i>Oecophylla smaragdina</i>,<i> </i>to treehoppers, <i>Tricentrus</i> sp.

<b>Digital appendi</b><b>x 2:</b> Predation by
weaver ants, <i>Oecophylla smaragdina</i>,<i> </i>of a non-pollinating fig wasp, <i>Platyneura mayri</i>.
DOI: 10.6084/m9.figshare.5162089.v1
title: Chemical camouflage and a trophic cascade are important processes in maintaining a complex network

description: Comparisons
of wasp and seed numbers among different levels of ant-treehopper abundances
DOI: 10.6084/m9.figshare.5172127
title: The Origin of Vertebrate RNA Viruses

description: Virus genome sequences, alignments, and phylogenies
DOI: 10.6084/m9.figshare.5175265
title: 2732125.csv

description: Underlying values of the phase transition diagrams and undersampling bounds for compressive digital holography with each of eleven wavelet transformations as sparsifying operator.
DOI: 10.6084/m9.figshare.5175265.v1
title: 2732125.csv

description: Underlying values of the phase transition diagrams and undersampling bounds for compressive digital holography with each of eleven wavelet transformations as sparsifying operator.
DOI: 10.6084/m9.figshare.5175271
title: 2732126.csv

description: PSNR and SNR values for the reconstructed computer-generated object wavefields as a function of the undersampling factor and the specific wavelet transformation.
DOI: 10.6084/m9.figshare.5175271.v1
title: 2732126.csv

description: PSNR and SNR values for the reconstructed computer-generated object wavefields as a function of the undersampling factor and the specific wavelet transformation.
DOI: 10.6084/m9.figshare.5176798
title: The complete mitogenome of <i>Parapoynx crisonalis</i> (Walker, 1859) (Lepidoptera: Crambidae), with phylogenetic relationships amongst three acentropine larval forms

description: The larvae of <i>Parapoynx crisonalis</i> (Walker, 1859) is an important pest in China, causing significant damage on the aquatic crops. To improve the management of <i>P. crisonalis</i> and demonstrate the phylogenetic relationships amongst Pyraloidea, the complete mitochondrial genome (mitogenome) sequences of four aquatic pyralid moths, which belong to three acentropine larval forms – Parapoynx-type, Nymphula-type and Potamomusa-type, and twenty-three terricolous pyralids were compared. The complete mitogenome <i>P. crisonalis</i>, a typical parapoynx larval species, was 15,374 base pairs in length and included 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and an A + T-rich region. The phylogenetic analysis revealed that all the aquatic acentropine moths formed a monophyletic clade with strong phylogenetic support via maximum likelihood and Bayesian methods with a bootstrap value of 100% and a posterior probability of 1.00. The Potamomusa-type was more closely related to the Nymphula-type than to the Parapoynx-type.
DOI: 10.6084/m9.figshare.5176798.v1
title: The complete mitogenome of <i>Parapoynx crisonalis</i> (Walker, 1859) (Lepidoptera: Crambidae), with phylogenetic relationships amongst three acentropine larval forms

description: The larvae of <i>Parapoynx crisonalis</i> (Walker, 1859) is an important pest in China, causing significant damage on the aquatic crops. To improve the management of <i>P. crisonalis</i> and demonstrate the phylogenetic relationships amongst Pyraloidea, the complete mitochondrial genome (mitogenome) sequences of four aquatic pyralid moths, which belong to three acentropine larval forms – Parapoynx-type, Nymphula-type and Potamomusa-type, and twenty-three terricolous pyralids were compared. The complete mitogenome <i>P. crisonalis</i>, a typical parapoynx larval species, was 15,374 base pairs in length and included 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and an A + T-rich region. The phylogenetic analysis revealed that all the aquatic acentropine moths formed a monophyletic clade with strong phylogenetic support via maximum likelihood and Bayesian methods with a bootstrap value of 100% and a posterior probability of 1.00. The Potamomusa-type was more closely related to the Nymphula-type than to the Parapoynx-type.
DOI: 10.6084/m9.figshare.5176993
title: Neighborhood characteristics influence DNA methylation of genes involved in stress response and inflammation: The Multi-Ethnic Study of Atherosclerosis

description: Living in a disadvantaged neighborhood is associated with poor health outcomes even after accounting for individual-level socioeconomic factors. The chronic stress of unfavorable neighborhood conditions may lead to dysregulation of the stress reactivity and inflammatory pathways, potentially mediated through epigenetic mechanisms such as DNA methylation. We used multi-level models to examine the relationship between 2 neighborhood conditions and methylation levels of 18 genes related to stress reactivity and inflammation in purified monocytes from 1,226 participants of the Multi-Ethnic Study of Atherosclerosis (MESA), a population-based sample of US adults. Neighborhood socioeconomic disadvantage, a summary of 16 census-based metrics, was associated with DNA methylation [False discovery rate (FDR) q-value ≤ 0.1] in 2 out of 7 stress-related genes evaluated (<i>CRF, SLC6A4</i>) and 2 out of 11 inflammation-related genes (<i>F8, TLR1</i>). Neighborhood social environment, a summary measure of aesthetic quality, safety, and social cohesion, was associated with methylation in 4 of the 7 stress-related genes (<i>AVP, BDNF, FKBP5, SLC6A4</i>) and 7 of the 11 inflammation-related genes (<i>CCL1, CD1D, F8, KLRG1, NLRP12, SLAMF7, TLR1</i>). High socioeconomic disadvantage and worse social environment were primarily associated with increased methylation. In 5 genes with significant associations between neighborhood and methylation (<i>FKBP5, CD1D, F8, KLRG1, NLRP12</i>), methylation was associated with gene expression of at least one transcript. These results demonstrate that multiple dimensions of neighborhood context may influence methylation levels and subsequent gene expression of stress- and inflammation-related genes, even after accounting for individual socioeconomic factors. Further elucidating the molecular mechanisms underlying these relationships will be important for understanding the etiology of health disparities.
DOI: 10.6084/m9.figshare.5176993.v1
title: Neighborhood characteristics influence DNA methylation of genes involved in stress response and inflammation: The Multi-Ethnic Study of Atherosclerosis

description: Living in a disadvantaged neighborhood is associated with poor health outcomes even after accounting for individual-level socioeconomic factors. The chronic stress of unfavorable neighborhood conditions may lead to dysregulation of the stress reactivity and inflammatory pathways, potentially mediated through epigenetic mechanisms such as DNA methylation. We used multi-level models to examine the relationship between 2 neighborhood conditions and methylation levels of 18 genes related to stress reactivity and inflammation in purified monocytes from 1,226 participants of the Multi-Ethnic Study of Atherosclerosis (MESA), a population-based sample of US adults. Neighborhood socioeconomic disadvantage, a summary of 16 census-based metrics, was associated with DNA methylation [False discovery rate (FDR) q-value ≤ 0.1] in 2 out of 7 stress-related genes evaluated (<i>CRF, SLC6A4</i>) and 2 out of 11 inflammation-related genes (<i>F8, TLR1</i>). Neighborhood social environment, a summary measure of aesthetic quality, safety, and social cohesion, was associated with methylation in 4 of the 7 stress-related genes (<i>AVP, BDNF, FKBP5, SLC6A4</i>) and 7 of the 11 inflammation-related genes (<i>CCL1, CD1D, F8, KLRG1, NLRP12, SLAMF7, TLR1</i>). High socioeconomic disadvantage and worse social environment were primarily associated with increased methylation. In 5 genes with significant associations between neighborhood and methylation (<i>FKBP5, CD1D, F8, KLRG1, NLRP12</i>), methylation was associated with gene expression of at least one transcript. These results demonstrate that multiple dimensions of neighborhood context may influence methylation levels and subsequent gene expression of stress- and inflammation-related genes, even after accounting for individual socioeconomic factors. Further elucidating the molecular mechanisms underlying these relationships will be important for understanding the etiology of health disparities.
DOI: 10.6084/m9.figshare.25467658
title: <b>Variation in Wound incidence across the UK Drosophila Genus</b>- Date and R code

description: Data set and R code used in the "<b>Variation in wild wound incidence across the UK Drosophila genus" </b>Dissertation paper Complete Drosophila collection data setComplete R code for statistical analysis CSV files made from main data set, used for statistical analysis, in order listed on R code
DOI: 10.6084/m9.figshare.25467658.v1
title: <b>Variation in Wound incidence across the UK Drosophila Genus</b>- Date and R code

description: Data set and R code used in the "<b>Variation in wild wound incidence across the UK Drosophila genus" </b>Dissertation paper Complete Drosophila collection data setComplete R code for statistical analysis CSV files made from main data set, used for statistical analysis, in order listed on R code
DOI: 10.6084/m9.figshare.5178199
title: Effectiveness and safety of endoscopic resection for gastric GISTs: a systematic review

description: <b>Aims:</b> To evaluate the effectiveness and safety of endoscopic resection for gastric gastrointestinal stromal tumors (GISTs). <b>Material and methods:</b> The effectiveness and safety of endoscopic resection were mainly assessed by complete resection rate, postoperative adverse event rate, and recurrence rate. Moreover, a comparison of endoscopic with laparoscopic resection for gastric GISTs was made through weighted mean difference by STATA 12.0 with regard to operation time, blood loss, and length of stay after including patients who underwent endoscopic or laparoscopic resection for gastric GISTs in the comparative studies. <b>Results:</b> Eleven studies investigating endoscopic resection for GISTs were included. For stromal tumors &lt;2 cm in average diameters the pooled rates of complete resection, postoperative adverse events and recurrence were 0.97, 0.08, and 0.03, respectively. Only five retrospective studies directly compared endoscopic with laparoscopic resection for gastric GISTs with average diameters from 1.1 cm to 3.8 cm, and endoscopic resection had a shorter operation time than laparoscopic resection, but there were no significant differences in intraoperative blood loss, length of stay, postoperative complications, and postoperative recurrence rates between the two approaches. <b>Conclusions:</b> Endoscopic resection is predominantly tried for gastric GISTs of relatively small size. It seems effective and safe for gastric GISTs &lt;2 cm in average diameter, with relatively short operation times.
DOI: 10.6084/m9.figshare.5178199.v1
title: Effectiveness and safety of endoscopic resection for gastric GISTs: a systematic review

description: <b>Aims:</b> To evaluate the effectiveness and safety of endoscopic resection for gastric gastrointestinal stromal tumors (GISTs). <b>Material and methods:</b> The effectiveness and safety of endoscopic resection were mainly assessed by complete resection rate, postoperative adverse event rate, and recurrence rate. Moreover, a comparison of endoscopic with laparoscopic resection for gastric GISTs was made through weighted mean difference by STATA 12.0 with regard to operation time, blood loss, and length of stay after including patients who underwent endoscopic or laparoscopic resection for gastric GISTs in the comparative studies. <b>Results:</b> Eleven studies investigating endoscopic resection for GISTs were included. For stromal tumors &lt;2 cm in average diameters the pooled rates of complete resection, postoperative adverse events and recurrence were 0.97, 0.08, and 0.03, respectively. Only five retrospective studies directly compared endoscopic with laparoscopic resection for gastric GISTs with average diameters from 1.1 cm to 3.8 cm, and endoscopic resection had a shorter operation time than laparoscopic resection, but there were no significant differences in intraoperative blood loss, length of stay, postoperative complications, and postoperative recurrence rates between the two approaches. <b>Conclusions:</b> Endoscopic resection is predominantly tried for gastric GISTs of relatively small size. It seems effective and safe for gastric GISTs &lt;2 cm in average diameter, with relatively short operation times.
DOI: 10.6084/m9.figshare.5178313
title: Estimation of low-dose radiation-responsive proteins in the absence of genomic instability in normal human fibroblast cells

description: <b>Purpose:</b> Low-dose radiation has various biological effects such as adaptive responses, low-dose hypersensitivity, as well as beneficial effects. However, little is known about the particular proteins involved in these effects. Here, we sought to identify low-dose radiation-responsive phosphoproteins in normal fibroblast cells. <b>Materials and methods:</b> We assessed genomic instability and proliferation of fibroblast cells after γ-irradiation by γ-H2AX foci and micronucleus formation analyses and BrdU incorporation assay, respectively. We screened fibroblast cells 8 h after low-dose (0.05 Gy) γ-irradiation using Phospho Explorer Antibody Microarray and validated two differentially expressed phosphoproteins using Western blotting. <b>Results:</b> Cell proliferation proceeded normally in the absence of genomic instability after low-dose γ-irradiation. Phospho antibody microarray analysis and Western blotting revealed increased expression of two phosphoproteins, phospho-NFκB (Ser536) and phospho-P70S6K (Ser418), 8 h after low-dose radiation. <b>Conclusions:</b> Our findings suggest that low-dose radiation of normal fibroblast cells activates the expression of phospho-NFκB (Ser536) and phospho-P70S6K (Ser418) in the absence of genomic instability. Therefore, these proteins may be involved in DNA damage repair processes.
DOI: 10.6084/m9.figshare.5178313.v2
title: Estimation of low-dose radiation-responsive proteins in the absence of genomic instability in normal human fibroblast cells

description: <b>Purpose:</b> Low-dose radiation has various biological effects such as adaptive responses, low-dose hypersensitivity, as well as beneficial effects. However, little is known about the particular proteins involved in these effects. Here, we sought to identify low-dose radiation-responsive phosphoproteins in normal fibroblast cells. <b>Materials and methods:</b> We assessed genomic instability and proliferation of fibroblast cells after γ-irradiation by γ-H2AX foci and micronucleus formation analyses and BrdU incorporation assay, respectively. We screened fibroblast cells 8 h after low-dose (0.05 Gy) γ-irradiation using Phospho Explorer Antibody Microarray and validated two differentially expressed phosphoproteins using Western blotting. <b>Results:</b> Cell proliferation proceeded normally in the absence of genomic instability after low-dose γ-irradiation. Phospho antibody microarray analysis and Western blotting revealed increased expression of two phosphoproteins, phospho-NFκB (Ser536) and phospho-P70S6K (Ser418), 8 h after low-dose radiation. <b>Conclusions:</b> Our findings suggest that low-dose radiation of normal fibroblast cells activates the expression of phospho-NFκB (Ser536) and phospho-P70S6K (Ser418) in the absence of genomic instability. Therefore, these proteins may be involved in DNA damage repair processes.
DOI: 10.6084/m9.figshare.5178313.v1
title: Estimation of low-dose radiation-responsive proteins in the absence of genomic instability in normal human fibroblast cells

description: <i>Purpose</i>: Low-dose radiation has various biological effects such as adaptive responses, low-dose hypersensitivity, as well as beneficial effects. However, little is known about the particular proteins involved in these effects. Here, we sought to identify low-dose radiation-responsive phosphoproteins in normal fibroblast cells. <i>Materials and Methods</i>: We assessed genomic instability and proliferation of fibroblast cells after γ-irradiation by γ-H2AX foci and micronucleus formation analyses and BrdU incorporation assay, respectively. We screened fibroblast cells 8 h after low-dose (0.05 Gy) γ-irradiation using Phospho Explorer Antibody Microarray and validated two differentially expressed phosphoproteins using western blotting. <i>Results</i>: Cell proliferation proceeded normally in the absence of genomic instability after low-dose γ-irradiation. Phospho antibody microarray analysis and western blotting revealed increased expression of two phosphoproteins, phospho-NFκB (Ser536) and phospho-P70S6K (Ser418), 8 h after low-dose radiation. <i>Conclusions</i>: Our findings suggest that low-dose radiation of normal fibroblast cells activates the expression of phospho-NFκB (Ser536) and phospho-P70S6K (Ser418) in the absence of genomic instability. Therefore, these proteins may be involved in DNA damage repair processes.
DOI: 10.6084/m9.figshare.5181154
title: Early Carboniferous ophiolite in central Qiangtang, northern Tibet: record of an oceanic back-arc system in the Palaeo-Tethys Ocean

description: Zircon U–Pb dating of two samples of metagabbro from the Riwanchaka ophiolite yielded early Carboniferous ages of 354.4 ± 2.3 Ma and 356.7 ± 1.9 Ma. Their positive zircon <i>ε</i>Hf(<i>t</i>) values (+7.9 to +9.9) indicate that these rocks were derived from a relatively depleted mantle. The metagabbros can be considered as two types: R1 and R2. Both types are tholeiitic, with depletion of high-field-strength elements (HFSE) and enrichment of large-ion lithophile elements (LILE) similar to those of typical back-arc basin basalts (BABB), such as Mariana BABB and East Scotia Ridge BABB. Geochemical and isotopic characteristics indicate that the R1 metagabbro originated from a back-arc basin spreading ridge with addition of slab-derived fluids, whereas the R2 metagabbro was derived from a back-arc basin mantle source, with involvement of melts and fluids from subducted ocean crust. The Riwanchaka ophiolite exhibits both mid-ocean ridge basalts- and arc-like geochemical affinities, consistent with coeval ophiolites from central Qiangtang. Observations indicate that the Qiangtang ophiolites developed during the Late Devonian–early Carboniferous (D<sub>3</sub>–C<sub>1</sub>) in a back-arc spreading ridge above an intra-oceanic subduction zone. Based on our data and previous studies, we propose that an oceanic back-arc basin system existed in the Longmuco–Shuanghu–Lancang Palaeo-Tethys Ocean during the D<sub>3</sub>–C<sub>1</sub> period.
DOI: 10.6084/m9.figshare.5181154.v1
title: Early Carboniferous ophiolite in central Qiangtang, northern Tibet: record of an oceanic back-arc system in the Palaeo-Tethys Ocean

description: Zircon U–Pb dating of two samples of metagabbro from the Riwanchaka ophiolite yielded early Carboniferous ages of 354.4 ± 2.3 Ma and 356.7 ± 1.9 Ma. Their positive zircon <i>ε</i>Hf(<i>t</i>) values (+7.9 to +9.9) indicate that these rocks were derived from a relatively depleted mantle. The metagabbros can be considered as two types: R1 and R2. Both types are tholeiitic, with depletion of high-field-strength elements (HFSE) and enrichment of large-ion lithophile elements (LILE) similar to those of typical back-arc basin basalts (BABB), such as Mariana BABB and East Scotia Ridge BABB. Geochemical and isotopic characteristics indicate that the R1 metagabbro originated from a back-arc basin spreading ridge with addition of slab-derived fluids, whereas the R2 metagabbro was derived from a back-arc basin mantle source, with involvement of melts and fluids from subducted ocean crust. The Riwanchaka ophiolite exhibits both mid-ocean ridge basalts- and arc-like geochemical affinities, consistent with coeval ophiolites from central Qiangtang. Observations indicate that the Qiangtang ophiolites developed during the Late Devonian–early Carboniferous (D<sub>3</sub>–C<sub>1</sub>) in a back-arc spreading ridge above an intra-oceanic subduction zone. Based on our data and previous studies, we propose that an oceanic back-arc basin system existed in the Longmuco–Shuanghu–Lancang Palaeo-Tethys Ocean during the D<sub>3</sub>–C<sub>1</sub> period.
DOI: 10.6084/m9.figshare.5182984
title: 2724332.csv

description: Data file for Figure 3
DOI: 10.6084/m9.figshare.5182984.v1
title: 2724332.csv

description: Data file for Figure 3
DOI: 10.6084/m9.figshare.5182987
title: 2724333.csv

description: Data file for Figure 5(a)
DOI: 10.6084/m9.figshare.5182987.v1
title: 2724333.csv

description: Data file for Figure 5(a)
DOI: 10.6084/m9.figshare.5182990
title: 2724334.csv

description: Data file for Figure 5(b)
DOI: 10.6084/m9.figshare.5182990.v1
title: 2724334.csv

description: Data file for Figure 5(b)
DOI: 10.6084/m9.figshare.5182993
title: 2724335.csv

description: Data file for Figure 6(a)
DOI: 10.6084/m9.figshare.5182993.v1
title: 2724335.csv

description: Data file for Figure 6(a)
DOI: 10.6084/m9.figshare.5182996
title: 2724336.csv

description: Data file for Figure 6(b)
DOI: 10.6084/m9.figshare.5182996.v1
title: 2724336.csv

description: Data file for Figure 6(b)