cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/dtk86rjm86
title: Kernel Density Analyses of Coral and Sponge Catches from Research Vessel Survey Data for Use in Identification of Significant Benthic Areas

description: Kernel density estimation (KDE) utilizes spatially explicit data to model the distribution of a variable of interest. It is a simple non-parametric neighbour-based smoothing function that relies on few assumptions about the structure of the observed data. It has been used in ecology to identify hotspots, that is, areas of relatively high biomass/abundance, and in 2010 was used by Fisheries and Oceans Canada to delineate significant concentrations of corals and sponges. The same approach has been used successfully in the Northwest Atlantic Fisheries Organization (NAFO) Regulatory Area. Here, we update the previous analyses with the catch records from up to 5 additional years of trawl survey data from Eastern Canada, including the Gulf of St. Lawrence. We applied kernel density estimation to create a modelled biomass surface for each of sponges, small and large gorgonian corals, and sea pens, and applied an aerial expansion method to identify significant concentrations of theses taxa. We compared our results to those obtained previously and provided maps of significant concentrations as well as point data co-ordinates for catches above the threshold values used to construct the significant area polygons. The borders of the polygons can be refined using knowledge of null catches and species distribution models of species presence/absence and/or biomass.
DOI: 10.17632/yvwzvzvh4w
title: Data for: Isoscapes reveal patterns of δ13C and δ15N of pelagic forage fish and squid in the Northwest Pacific Ocean

description: Appendix Collection year, month, positions, genus, species, body mass, δ13C, δ15N, organisms and vertical habitat in the North western Pacific for estimating the isoscapes.
DOI: 10.6084/m9.figshare.24540925.v1
title: Supplementary Material for: Sitagliptin Extends Lifespan of Caenorhabditis elegans by Inhibiting IIS and Activating DR-like Signaling Pathways

description: Introduction: The discovery of longevity molecules that delay aging and prolong lifespan has always been a dream of humanity. Sitagliptin phosphate (SIT), an oral dipeptidyl peptidase-4 (DPP-4) inhibitor, is an oral drug commonly used in the treatment of type 2 diabetes (T2D). In addition to being anti-diabetic, previous studies have reported that SIT has shown potential to improve health. However, whether SIT plays a role in the amelioration of aging and the underlying molecular mechanism remain undetermined. Methods: Caenorhabditis elegans (C. elegans) was used as a model of aging. Lifespan assays were performed with adult-stage worms on NGM plates containing FUDR with or without the specific concentration of SIT. The period of fast body movement, body bending rates and pharyngeal pumping rates were recorded to assess the health-span of C. elegans. Gene expression was confirmed by GFP fluorescence signal of transgenic worms and qPCR. In addition, the intracellular ROS levels were measured using a free radical sensor H2DCF-DA. Results: We found that SIT significantly extended lifespan and health-span of C. elegans. Mechanistically, we found that several age-related pathways and genes were involved in SIT-induced lifespan extension. The transcription factors DAF-16/FOXO, SKN-1/NRF2 and HSF-1 played important roles in SIT-induced longevity. Moreover, our findings illustrated that SIT induced survival benefits by inhibiting the insulin/insulin-like signaling (IIS) pathway and activating the dietary restriction (DR)-related and mitochondrial function-related signaling pathways. Conclusion: Our work may provide a theoretical basis for the development of anti-T2D drugs as anti-aging drugs, especially for the treatment of age-related disease in diabetic patients.
DOI: 10.17632/z2549yvydn
title: Dataset guidelines for submitting academic or research papers

description: Adapt and standardize the APA style standard under this guide to the presentation of academic papers.
Adaptar y normalizar el estilo norma APA bajo esta guía para la presentación de trabajos académicos.
DOI: 10.6084/m9.figshare.3103072.v1
title: New draft item

description: Participants included 29 elementary/middle level education preservice teachers enrolled in a social studies methods course in their final semester prior to student internship. All participants were female. Of the participants in the course, 27 were eligible for social studies endorsements with their 21 hours of social studies course work.To assess their knowledge of primary sources, we asked the participants to define primary sources and to make a list of primary sources. One unexpected outcome of this was that our students did not see information posted on social media, particularly Twitter as a primary source. They viewed it as a secondary source. We thought this was interesting and important and dug deeper into their responses to see what impact this might have on their ability to teach history.
DOI: 10.6084/m9.figshare.25598469.v1
title: Social Safety Net (SSN).csv

description: Access to Social Safety Nets (SSN): commonly referred to us 'Social Capital' is considered as an access to social support services either formal or informal types play essential element for poor households to resist food insecurity. According to the previous research recommendations and researchers experience of the study area, different variables were directly observed from respondent households. This data file included the variables used to compute index for household's 'Access to Social Safety Net".
DOI: 10.6084/m9.figshare.11709690.v1
title: 15-I2147-Pentaketide-24p

description: pentaketide docked in I2147A mutant ER model
DOI: 10.17632/rp6fgdrn7d
title: Serum bile acids

description: Circulating bile acid data measured by Metabolon in TwinsUK, Zoe-PREDICT 1 and in the Omega3 and fibre nutrional intervention study. Data is day median normalised and imputed to the day min.
DOI: 10.6084/m9.figshare.22352920.v1
title: Supplementary Material for: Molecular genetic analysis and growth hormone treatment in a three-generation Chinese family with Tricho-rhino-phalangeal syndrome I

description: Background: Tricho-rhino-phalangeal syndrome (TRPS) is a rare genetic disorder characterized by craniofacial and skeletal abnormalities, which is caused by variations in the TRPS1 gene. Methods: Clinical information and follow-up data were collected. Whole-exome sequencing (WES) was performed for variations and validated by Sanger sequencing. Bioinformatic analysis was performed to predict the pathogenicity of the identified variation. Moreover, wild-type and mutated TRPS1 vectors were constructed and transfected into human embryonic kidney (HEK) 293T cells. Immunofluorescence experiments were performed to assess the localization and expression of the mutated protein. Western blot analysis and RT-qPCR were used to detect the expression of downstream genes. Results: The affected family members had typical craniofacial phenotype including sparse lateral eyebrows, pear-shaped nasal tip, and large prominent ears, plus skeletal abnormalities including short stature and brachydactyly. WES and Sanger sequencing identified the TRPS1 c.880_882delAAG variation in affected family members. In vitro functional studies showed that the TRPS1 variation did not affect the cellular localization and the expression of TRPS1, but the transcriptional repression effect of the TRPS1 on the RUNX2 and STAT3 was disturbed. The proband and his brother have been treated with growth hormone (GH) for two years until now, and we observed the improvement of the linear growth in both. Conclusions: The variation of c.880_882delAAG in TRPS1 was responsible for the pathogenesis of the Chinese family with TRPS I. The treatment of GH could be beneficial for the height outcome in TRPS I patients, and earlier initiation and longer duration of the therapy in prepubertal or early pubertal stage could be associated with better height outcomes.
DOI: 10.17632/97tytghd47
title: Legal W2V: Legal Vocabulary Embedding

description: Legal W2V is a Legal domain-specific word embedding trained using more than 48,000 judgments from the Supreme Court of India, decided during the span period of January 1950 to December 2016 (76 years). It contains more than 34,000 Legal vocabulary words and their respective 100-dimensional vectors, which is trained using Continuous Bag of Word variant of Word2Vec, considering Gensim Library. Potential applications scope of this Legal Word embedding would be to explore various active research domains viz. Legal Information retrieval and Legal Informatics. Parameter Settings: Vector size: 100, Window size: 10, Number of iterations (iter): 10, Minimum count (min_count): 10.
DOI: 10.17632/m8kcmthfd2
title: Micropollutant screening of road and parking runoff in Paris conurbation

description: Within the frame of the ROULÉPUR research project, road and parking runoff from four sites (Paris, Compans, Rosny-sous-Bois and Villeneuve-le-Roi) with contrasted trafic levels, all situated in Paris conurbation, have been studied for a very broad spectrum of molecules. A total of 128 micropollutants were monitored, including metallic (n = 41) and organic (n = 87) pollutants. Both dissolved and particulate phases were considered.
With the exception of a few molecules which have not been detected, a large majority of the pollutants sought have been detected in runoff, with concentrations ranging from a few ng/l for the least concentrated pollutants such as brominated flame retardants  (PBDE, HBCDD, TBBPA) to several tens of µg/l for certain metallic elements. 
Overall, the contamination profiles are quite similar between the sites; the differences between sites being most often on the levels of concentration. Despite a high inter-event variability on each site, it is observed, for many micropollutants, that the sites with the highest traffic densities (Paris and Compans) have the highest concentrations compared to the other two sites. The Villeneuve-le-Roi site appears for many substances as the least contaminated. Finally, the Rosny-sous-Bois site in most cases has intermediate concentration levels. This trend is clear for metallic elements, total hydrocarbons, PAHs, alkylphenols (APs) and BPA and to lesser extent for PBDE. For perfluoroalkylated compounds, the Rosny-sous-Bois site stands out from other sites with very high point concentrations, but also very different profiles. For a majority of pollutants, similar concentration levels are observed between suspended matter and sediment.

More information can be found in the following paper: 
Gasperi, J.; Le Roux, J.; Deshayes, S.; Ayrault, S.; Bordier, L.; Boudahmane, L.; Budzinski, H.; Caupos, E.; Caubriere, N.; Flanagan, K.; et al. Micropollutants in Urban Runoff from Traffic Areas: Target and Non-Target Screening on Four Contrasted Sites. Water 2022, 14, 394. https://doi.org/10.3390/w14030394
DOI: 10.5281/zenodo.15308448
title: Data associated with Dynamical theory of chiral-induced spin selectivity in electron donor–chiral  molecule–acceptor systems

description: Data used to produce the figures in the paper "Dynamical theory of chiral-induced spin selectivity in electron donor–chiral molecule–acceptor systems".
DOI: 10.5281/zenodo.15308449
title: Data associated with Dynamical theory of chiral-induced spin selectivity in electron donor–chiral  molecule–acceptor systems

description: Data used to produce the figures in the paper "Dynamical theory of chiral-induced spin selectivity in electron donor–chiral molecule–acceptor systems".
DOI: 10.6084/m9.figshare.28869284.v1
title: <b>A Quantitative Database of Scenarios for the Southwestern Amazon</b>

description: We developed and applied a scenario framework to explore potential future trajectories of regional agricultural development through a transdisciplinary co-design process involving regional stakeholders and international scientists. The framework was implemented in the MAP region of the Southwestern Amazon, which encompasses three neighboring subnational entities: Madre de Dios (Peru), Acre (Brazil), and Pando (Bolivia).In this dataset, we present the raw data generated through the quantified scenario trajectories. These data offer a valuable foundation for impact assessments and model-based simulation experiments aimed at understanding agricultural development and related social-environmental impacts in the Southwestern Amazon. The scenario development process, along with the resulting data and interpretations, is described in detail in the original research article.
DOI: 10.15468/dl.sgjpkp
title: Occurrence Download

description: A dataset containing 29151 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Avicennia marina (Forssk.) Vierh."
 ]
}

 The dataset includes 29151 records from 146 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009237-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/gsgkptkc67
title: Stable isotope equilibria in the dihydrogen-water-methane-ethane-propane system. Part 2: Experimental determination of hydrogen isotopic equilibrium for ethane-H2 from 30-200°C and propane-H2 from 75-200°C

description: Research data for Turner et al. (2025). Stable isotope equilibria in the dihydrogen-water-methane-ethane-propane system. Part 2: Experimental determination of hydrogen isotopic equilibrium for ethane-H2 from 30-200°C and propane-H2 from 75-200°C.
DOI: 10.17632/ggyh2g2mwj
title: Global online trade is driving poison dart frogs (family: Dendrobatidae) towards extinction

description: The datasets used to construct Figure 5 in the manuscript "Global online trade is driving poison dart frogs (family: Dendrobatidae) towards extinction" were written by me.
DOI: 10.6084/m9.figshare.5644951.v1
title: Floristic-functional variation of tree component along an altitudinal gradient in araucaria forest areas, in Southern Brazil

description: ABSTRACT We aimed to investigate the taxonomic and functional variations of tree component of Araucaria Forest (AF) areas located along an altitudinal gradient (700, 900 and 1,600 m asl), in the southern region of Brazil. The functional traits determined were leaf area, specific leaf area, wood density, maximum potential height and dispersal syndromes and deciduousness. The data were analyzed through a functional and taxonomic dissimilarity dendrograms, community-weighted mean trait values, parametric and nonparametric tests, and Principal Component Analysis. The largest floristic-structural similarity was observed between the lower altitude areas (700 and 900 m asl), whose Bray-Curtis distance was 0.63. The area at 700 m asl was characterized by a predominance of deciduous and semi-deciduous species, with a high number of self- and wind-dispersed species, whereas the area at 1,600 m asl exhibited a predominance of animal-dispersed and evergreen species. It was also observed that there were significant variations for leaf traits, basic wood density and maximum potential height. Over all altitudinal gradient, the ordinations indicated that there was no evidence of functional differentiation among dispersal and deciduousness groups. In conclusion, the evaluated Araucaria Forest areas presented high floristic-functional variation of the tree component along the altitudinal gradient.
DOI: 10.6084/m9.figshare.9936926.v1
title: Assessment of cerebral autoregulation indices – a modelling perspective

description: Various methodologies to assess cerebral autoregulation (CA) have been developed, including model - based methods (e.g. autoregulation index, ARI), correlation coefficient - based methods (e.g. mean flow index, Mx), and frequency domain - based methods (e.g. transfer function analysis, TF). Our understanding of relationships among CA indices remains limited, partly due to disagreement of different studies by using real physiological signals, which introduce confounding factors. The influence of exogenous noise on CA parameters needs further investigation. Using a set of artificial cerebral blood flow velocities (CBFV) generated from a well-known CA model, this study aims to cross-validate the relationship among CA indices in a more controlled environment. Real arterial blood pressure (ABP) measurements from 34 traumatic brain injury patients were applied to create artificial CBFVs. Each ABP recording was used to create 10 CBFVs corresponding to 10 CA levels (ARI from 0 to 9). Mx, TF phase, gain and coherence in low frequency (LF) and very low frequency (VLF) were calculated. The influence of exogenous noise was investigated by adding three levels of colored noise to the artificial CBFVs. The result showed a significant negative relationship between Mx and ARI (r=-0.95, p&lt;0.001), and it became almost purely linear when ARI is between 3 to 6. For transfer function parameters, ARI positively related with phase (r=0.986 at VLF and 0.93 at LF, p&lt;0.001) and negatively related with gain_VLF(r = -0.977, p&lt;0.001). Exogenous noise changed the actual values of the CA parameters and increased the standard deviation. Our results validated the interchangeability of various CA indexes (under ARI= 3 to 6 and their corresponding Mxa and TF phase/ gain values) from a theoretical level. They also highlighted the importance of exogenous noise, showing that even the same CA value might correspond to different CA levels under different ‘noise’ conditions.
DOI: 10.17632/tcj2btw63r
title: NNAIMQ-DATA

description: Repository collecting the data employed for the training and validation of the NNAIMQ NN model.
DOI: 10.6084/m9.figshare.6199271.v1
title: Introducing a Precast Moment Resistant Beam-to-column Concrete Connection Comparable with In-situ One

description: In this study it was attempted to introduce a type of precast beam-to-column connection which in spite of being simple is of the same efficiency and performance as in-situ beam-to-column connection. For this purpose, the performance of proposed precast beam-to-column connection at exterior joint of a four story structure was analysed by pseudo dynamic analysis and compared with that of in-situ beam-to-column connection. The force-displacement data of proposed precast (SP1) and equivalent in-situ connection (SP2) with verification analysis result are shown here.
DOI: 10.17632/5kbjrgsncf
title: Medical Imagining (CT scan, MRI, X-ray, and Microscopic Imagery) Data

description: The respective data is comprised of 5 different datasets of medical images collected by the contributors, which can be used for classifying Lung Cancer, Bone Fracture, Brain tumor, Skin Lesions, and Renal Malignancy, respectively. The data also includes multiple disease and malignancy images for the respective dataset. 
The classification for the diseases can be done by using ResNet50 CNN architecture and other DCNN models. This data is also been used in a research article by the contributor.
DOI: 10.17632/mm7ygtx8vh
title: UCLA_1 Dataset (Locally Linear Embedding and fMRI feature selection for psychiatric classification)

description: ABIDE dataset collected at the University of California Los Angeles Ahmanson Lovelace Brain Mapping Centre
DOI: 10.17632/xxjh8yrnmj
title: Observations of Flipped Learning and Feedforward Pedagogical Teaching Methods and their Impact on Learning

description: The importance of using Feedforward and Flipped learning as a pedagogical teaching and learning methods were assessed. It was observed that learners made progress irrespective of the approach used. However, it was evident from the observations that even though both methods improved the learning of all learners, there were slight differences in preferred approach based on the ability of the learners. While high-attaining learners preferred Flipped learning approach, the low-attaining learners, on the other hand, favoured the feedforward approach. The results suggest that, in an inclusive class, both approaches become essential in the teaching and learning processes.
DOI: 10.17632/62zrbmgh2v
title: mid-IR raw spectra from low molecular weight permeate of ultra filtrated spent sulfite liquor (UF-SSL) including sugar reference measurements

description: Raw mid-IR spectra including reference measurements of up to 5 sugars. The datasets include 2 case studies with indipendant datasets for calibration, validation and in-line usage (including reference measurements at sample times with respective spectra as well as all spectra over ~250h of continous in-line application). Low Complexity (LC) case study consists of 1 batch af UF-SSL diluted to 25% with ultra pure water with the three most abundant sugars in UF-SSL (mannose, xylose, glucose) spiked. High Complexity (HC) case study consists of 2 batches of UF-SSL, diluted to 25/50/75% with ultra pure water with the 5 most abundant sugars in UF-SSL (LC + galactose, arabinose).
DOI: 10.17632/j9x7yhcvd4
title: Data for: Higher flood-frequency periods linked to human activities, increased erosion, and rejuvenation of soils in a subalpine catchment

description: This data set concerns the analysis performed on Lake Gers sediment sequence and includes its age-depth model, data from the short-lived radionuclides, data of the grain-size of the sediments, loss-on-ignition, magnetic susceptibility, XRF geochemistry, the list of the instantaneous deposits, the erosion, the flood-frequency and the data of the DNA of mammals on trees.
DOI: 10.6084/m9.figshare.1311752
title: Positive correlation between ADAR expression and its targets suggests a complex regulation mediated by RNA editing in the human brain

description: A-to-I RNA editing by adenosine deaminases acting on RNA is a post-transcriptional modification that is crucial for normal life and development in vertebrates. RNA editing has been shown to be very abundant in the human transcriptome, specifically at the primate-specific Alu elements. The functional role of this wide-spread effect is still not clear; it is believed that editing of transcripts is a mechanism for their down-regulation via processes such as nuclear retention or RNA degradation. Here we combine 2 neural gene expression datasets with genome-level editing information to examine the relation between the expression of ADAR genes with the expression of their target genes. Specifically, we computed the spatial correlation across structures of post-mortem human brains between ADAR and a large set of targets that were found to be edited in their Alu repeats. Surprisingly, we found that a large fraction of the edited genes are positively correlated with ADAR, opposing the assumption that editing would reduce expression. When considering the correlations between ADAR and its targets over development, 2 gene subsets emerge, positively correlated and negatively correlated with ADAR expression. Specifically, in embryonic time points, ADAR is positively correlated with many genes related to RNA processing and regulation of gene expression. These findings imply that the suggested mechanism of regulation of expression by editing is probably not a global one; ADAR expression does not have a genome wide effect reducing the expression of editing targets. It is possible, however, that RNA editing by ADAR in non-coding regions of the gene might be a part of a more complex expression regulation mechanism.
DOI: 10.17632/b7kxnbw3bb
title: Data for: Vivianite Oxidation is Not Photocatalyzed

description: Raw data for all figures in the manuscript "Vivianite Oxidation is Not Photocatalyzed".
DOI: 10.17632/6f2x25fyyz
title: Decoding Fish Origins new

description: These results correspond to those presented in the paper entitled Decoding Fish Origins: How Metals and Metabolites Differentiate Wild, Cultured, and Escaped Specimens.
(Warda Badaoui, Kilian Toledo-Guedes, Juan Manuel Valero-Rodriguez, Adrian Villar-Montalt, and Frutos C. Marhuenda-Egea)