cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6288139
title: AlphScore_final dataset

description: This file contains AlphScore_final as described in our associated publication. The file is based on dbNSFP 4.2a, contains a header and is tab-separated and compressed using bgzip. The columns contain the following content: #chr chromosome (hg38) pos(1-based) position (hg38) ref reference allele alt alternative allele aaref reference amino acid aaalt alternative amino acid rs_dbSNP rs number hg19_chr chromosome (hg19) hg19_pos(1-based) position (hg19) ID variant id in the format: chromosome:position:reference amino acid:alternative amino acid genename genename, taken from dbNSFP Uniprot_acc_split The Uniprot-IDs of the structural models that were used to create AlphScore_final (multiple entries separated by ; ) Uniprot_acc Uniprot_acc as provided by dbNSFP HGVSp_VEP_split The missense variant(s) as used to create AlphScore_final; these variant(s) correspond(s) to the Uniprot_acc_split HGVSp_VEP HGVSp_VEP as provided by dbNSFP CADD_raw CADD_raw as provided by dbNSFP REVEL_score REVEL_score as provided by dbNSFP DEOGEN2_score DEOGEN2_score as provided by dbNSFP b_factor AlphaFold's pLDDT-score of the residue (if a variant affects multiple proteins, the values of the proteins as indicated in Uniprot_acc_split are given separated by ; ). SOLVENT_ACCESSIBILITY_core Solvent accessibility of the residue as calculated for C-alpha by DSSP (if a variant affects multiple proteins, the values of the proteins as indicated in Uniprot_acc_split are given separated by ; ). in_gnomad_train TRUE if the variant was in the gnomAD set used for training in_clinvar_ds TRUE if the variant was in the ClinVar set used for validation / training of combined scores AlphScore This column corresponds to AlphScore_final glm_AlphCadd This column corresponds to AlphScore_final + CADD glm_AlphRevel This column corresponds to AlphScore_final + REVEL glm_RevelCadd This column corresponds to REVEL + CADD glm_AlphRevelCadd This column corresponds to AlphScore_final + REVEL + CADD glm_AlphDeogen This column corresponds to AlphScore_final + DEOGEN2 glm_CaddDeogen This column corresponds to CADD + DEOGEN2 glm_DeogenRevel This column corresponds to DEOGEN2 + REVEL glm_AlphDeogenRevel This column corresponds to AlphScore_final + DEOGEN2 + REVEL glm_AlphCaddDeogen This column corresponds to AlphScore_final + CADD + DEOGEN2 glm_CaddDeogenRevel This column corresponds to CADD + DEOGEN2 + REVEL Note that the Creative Commons license applies only to the values of AlphScore_final. REVEL and CADD scores as well as combined scores containing REVEL and CADD are not licensed for commercial use. The full list of references can be found in our manuscript.
DOI: 10.5281/zenodo.8283349
title: AlphScore_final dataset

description: This file contains AlphScore_final as described in our associated publication. The file is based on dbNSFP 4.2a, contains a header and is tab-separated and compressed using bgzip. The columns contain the following content: #chr chromosome (hg38) pos(1-based) position (hg38) ref reference allele alt alternative allele aaref reference amino acid aaalt alternative amino acid rs_dbSNP rs number hg19_chr chromosome (hg19) hg19_pos(1-based) position (hg19) ID variant id in the format: chromosome:position:reference amino acid:alternative amino acid genename genename, taken from dbNSFP Uniprot_acc_split The Uniprot-IDs of the structural models that were used to create AlphScore_final (multiple entries separated by ; ) Uniprot_acc Uniprot_acc as provided by dbNSFP HGVSp_VEP_split The missense variant(s) as used to create AlphScore_final; these variant(s) correspond(s) to the Uniprot_acc_split HGVSp_VEP HGVSp_VEP as provided by dbNSFP CADD_raw CADD_raw as provided by dbNSFP REVEL_score REVEL_score as provided by dbNSFP DEOGEN2_score DEOGEN2_score as provided by dbNSFP b_factor AlphaFold's pLDDT-score of the residue (if a variant affects multiple proteins, the values of the proteins as indicated in Uniprot_acc_split are given separated by ; ). SOLVENT_ACCESSIBILITY_core Solvent accessibility of the residue as calculated for C-alpha by DSSP (if a variant affects multiple proteins, the values of the proteins as indicated in Uniprot_acc_split are given separated by ; ). in_gnomad_train TRUE if the variant was in the gnomAD set used for training in_clinvar_ds TRUE if the variant was in the ClinVar set used for validation / training of combined scores AlphScore This column corresponds to AlphScore_final glm_AlphCadd This column corresponds to AlphScore_final + CADD glm_AlphRevel This column corresponds to AlphScore_final + REVEL glm_RevelCadd This column corresponds to REVEL + CADD glm_AlphRevelCadd This column corresponds to AlphScore_final + REVEL + CADD glm_AlphDeogen This column corresponds to AlphScore_final + DEOGEN2 glm_CaddDeogen This column corresponds to CADD + DEOGEN2 glm_DeogenRevel This column corresponds to DEOGEN2 + REVEL glm_AlphDeogenRevel This column corresponds to AlphScore_final + DEOGEN2 + REVEL glm_AlphCaddDeogen This column corresponds to AlphScore_final + CADD + DEOGEN2 glm_CaddDeogenRevel This column corresponds to CADD + DEOGEN2 + REVEL Note that the Creative Commons license applies only to the values of AlphScore_final. REVEL and CADD scores as well as combined scores containing REVEL and CADD are not licensed for commercial use. The full list of references can be found in our manuscript.
description: These are updated files which include chromosome 22. In version 1 of the files, chromosome 22 did not exist. The ranges and interpretations of the scores are the same as in the first version of the files.
DOI: 10.48511/ma00-bk89
title: Delphine Creek Hydrometric

description: This dataset contains hydrometric and water temperature data for Delphine Creek hydrometric station. This site is part of the Living Lakes Canada Columbia Basin Water Monitoring Framework program. Delphine Creek was selected for monitoring a tributary of Toby Creek, which is an important water source for several uses. Delphine Creek is also a high elevation watershed. The data is being collected to track the impacts of climate change on Columbia Basin water supply and support community climate adaptation. Monitoring has been implemented on this site. Data will be added soon.

Province of BC, Healthy Watersheds Initiative partners (Stronger BC, Real Estate Foundation of BC, Watersheds BC), Province of BC, Columbia Basin Trust, Canada’s Digital Technology Supercluster partners (Carl Data Solutions, Teck Resources Ltd., Microsoft, Astra Smart Systems, i4C Innovation, the University of Victoria and Genome BC), MakeWay, RBC Tech for Nature, Regional District of Central Kootenay, Sitka Foundation, and the Vancouver Foundation.
DOI: 10.15482/usda.adc/1529441
title: Hyalella azteca Official Gene Set v1.2

description: This dataset presents the Hyalella azteca Official Gene Set OGSv1.2. The Hyalella azteca genome assembly was recently updated to assembly Hazt_2.0 (https://www.ncbi.nlm.nih.gov/assembly/GCF_000764305.1).  The Hyalella azteca Official Gene Set v1.0, originally generated from assembly Hyalella azteca Genome Assembly 1.0 (10.15482/USDA.ADC/1415994) was lifted over to Hazt_2.0 using the NCBI's remap service, the CrossMap software (http://crossmap.sourceforge.net/), and remap_gff3 (https://github.com/NAL-i5K/remap-gff3). This resulted in the unreleased OGSv1.1. OGSv1.1 received additional QA/QC during NCBI submission, generating Hyalella azteca OGSv1.2.
DOI: 10.5517/ccdc.csd.cc286g54
title: CCDC 2091575: Experimental Crystal Structure Determination

description: Related Article: Luis A. Ortiz-Rodríguez, Ye-Guang Fang, Germain Niogret, Kaivin Hadidi, Sean J. Hoehn, Heather J. Folkwein, Steffen Jockusch, Yitzhak Tor, Ganglong Cui, Liraz Levi, Carlos E. Crespo-Hernández|2023|Chemical Science|14|8831|doi:10.1039/D3SC02592F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28qmn9
title: CCDC 2107121: Experimental Crystal Structure Determination

description: Related Article: Di Yang, Shanshan Li, Xiaotian Wu, Wenzhi Wang, Zepeng Cai, Chen Ma|2023|J.Org.Chem.|88|11581|doi:10.1021/acs.joc.3c00888
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28ylrl
title: CCDC 2113820: Experimental Crystal Structure Determination

description: Related Article: Millena P. Ferreira, Caio B. Castro, João Honorato, Sheng He, Walber Gonçalves Guimarães Júnior, Charlene Esmieu, Eduardo E. Castellano, André F. de Moura, Daniela R. Truzzi, Otaciro R. Nascimento, Antoine Simonneau, Caterina G. C. Marques Netto|2023|Dalton Trans.|52|11254|doi:10.1039/D3DT01091K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28ylsm
title: CCDC 2113821: Experimental Crystal Structure Determination

description: Related Article: Millena P. Ferreira, Caio B. Castro, João Honorato, Sheng He, Walber Gonçalves Guimarães Júnior, Charlene Esmieu, Eduardo E. Castellano, André F. de Moura, Daniela R. Truzzi, Otaciro R. Nascimento, Antoine Simonneau, Caterina G. C. Marques Netto|2023|Dalton Trans.|52|11254|doi:10.1039/D3DT01091K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29gs2n
title: CCDC 2129361: Experimental Crystal Structure Determination

description: Related Article: Shuo Sun, Danna Chen, Hai Guo, Yinghui Liu, Xia Liu, Wenjin Yan, Jinqi Huang|2023|Eur.J.Org.Chem.|26|e202300586|doi:10.1002/ejoc.202300586
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.48511/11jf-d969
title: Bugaboo Creek Hydrometric

description: This dataset contains hydrometric and water temperature data for Bugaboo Creek hydrometric station. This site is part of the Living Lakes Canada Columbia Basin Water Monitoring Framework program. Bugaboo Creek was selected for monitoring a glacier fed watershed with a wide range of uses. Bugaboo Creek was identified as a priority by the Local Reference Group. The data is being collected to track the impacts of climate change on Columbia Basin water supply and support community climate adaptation. Monitoring has been implemented on this site. Data will be added soon.

Province of BC, Healthy Watersheds Initiative partners (Stronger BC, Real Estate Foundation of BC, Watersheds BC), Province of BC, Columbia Basin Trust, Canada’s Digital Technology Supercluster partners (Carl Data Solutions, Teck Resources Ltd., Microsoft, Astra Smart Systems, i4C Innovation, the University of Victoria and Genome BC), MakeWay, RBC Tech for Nature, Regional District of Central Kootenay, Sitka Foundation, and the Vancouver Foundation.
DOI: 10.6084/m9.figshare.23906118.v1
title: Data for diversity effects

description: Data and R codes for global biodiversity effects
DOI: 10.48511/axsy-1t26
title: Bruce Creek Hydrometric

description: This dataset contains hydrometric and water temperature data for Bruce Creek hydrometric station. This site is part of the Living Lakes Canada Columbia Basin Water Monitoring Framework program. Bruce Creek was selected to build on the historic Water Survey of Canada record available for this location. The data is being collected to track the impacts of climate change on Columbia Basin water supply and support community climate adaptation. Monitoring has been implemented on this site. Data will be added soon.

Province of BC, Healthy Watersheds Initiative partners (Stronger BC, Real Estate Foundation of BC, Watersheds BC), Province of BC, Columbia Basin Trust, Canada’s Digital Technology Supercluster partners (Carl Data Solutions, Teck Resources Ltd., Microsoft, Astra Smart Systems, i4C Innovation, the University of Victoria and Genome BC), MakeWay, RBC Tech for Nature, Regional District of Central Kootenay, Sitka Foundation, and the Vancouver Foundation.
DOI: 10.34943/3fc0738e-d40e-486c-8e9d-8fd5f2947d2c
title: Westshore Coal Terminal Oceanographic Radar System Deployed 2011-11-24

description: The CODAR SeaSonde 25MHz VCOL was deployed on 2011-11-24 at Westshore Coal Terminal. The Westshore Coal Terminal CODAR station contributes to an array of CODARs to monitor surface currents in Strait of Georgia. This device is a Oceanographic Radar System. Oceanographic radars measure the ocean surface currents and waves in near real-time, by timing reflected radio waves, and contribute to an accurate prediction of severe weather conditions. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.6073/pasta/82241094a5e6770560012076c7d71c11
title: Long-term species richness and evenness trends in response to N addition and elevated CO2 in BioCON

description: The data and code in this package are associated with the analysis for a manuscript titled "Elevated CO2 first dampens but then amplifies diversity loss due to N enrichment over 24 years". The files include 24 years of data on species cover, total aboveground biomass, species richness, evenness and environmental variables from the BioCON experiment. The complete BioCON (Biodiversity, CO2, and N) experiment includes 371 2 x 2 m plots in six circular 20-meter diameter rings, located at the Cedar Creek Ecosystem Science Reserve in Minnesota, USA. Plots were established on secondary successional grassland on a sandy outwash soil after removing the prior vegetation. The BioCON project includes several overlapping and nested experiments.
DOI: 10.5281/zenodo.5680950
title: Context-Aware Activity Recognition in Logistics (CAARL) – A optical marker-based Motion Capture Dataset

description: <strong>CAARL </strong>is a freely accessible logistics-dataset for human activity recognition, which contains human movement and context information from two subjects. The context information includes the positions of objects such as two picking carts, a packaging table, different racks, a base and three entrances. In the ’Innovationlab Hybrid Services in Logistics’ at TU Dortmund University, two picking and one packing scenarios were recorded using an optical marker based motion capture system. Each subject and object is equipped with several markers. 140 minutes of human movements have been labelled and categorised into 8 activity classes and 19 binary coarse-semantic descriptions, also called attributes. The labelled human movements are synchronised with the context information. They have exactly the same sampling rate (same start and end). The oMoCap data is in csv format. Further formats (e.g. C3D) are available on request. CAARL is based on the set-up and scenarios of the LARa dataset, which contains only human movements. Information about LARa can be found in the dataset and the associated paper: Dataset: “Logistic Activity Recognition Challenge (LARa) – A Motion Capture and Inertial Measurement Dataset”, Zenodo 2020, DOI: 10.5281/zenodo.3862782 Paper: “LARa: Creating a Dataset for Human Activity Recognition in Logistics Using Semantic Attributes”, Sensors 2020, DOI: 10.3390/s20154083 <strong>If you use the CAARL dataset for research, please cite the following paper: “Context-Aware Human Activity Recognition in Industrial Processes”, Sensors 2021, DOI: 10.3390/s22010134</strong>
description: Acknowledgement: This research was funded by the German Research Foundation (grant numbers: Fi799/10-2, HO2403/14-2) and the Federal Ministry of Transport and Digital Infrastructure (grant number: 45KI02B021).
description: {"references": ["Niemann, Friedrich et al. (2020). Journal article: \"LARa: Creating a Dataset for Human Activity Recognition in Logistics Using Semantic Attributes\", Sensors 2020, DOI: 10.3390/s20154083", "Niemann, Friedrich et al. (2020). Dataset: \"Logistic Activity Recognition Challenge (LARa) \u2013 A Motion Capture and Inertial Measurement Dataset\", Zenodo 2020, DOI: 10.5281/zenodo.3862782"]}
DOI: 10.48511/tzgt-sq87
title: Assiniboine Creek Hydrometric

description: This dataset contains hydrometric and water temperature data for Assiniboine Creek hydrometric station. This site is part of the Living Lakes Canada Columbia Basin Water Monitoring Framework program. Assiniboine Creek was selected to monitor the poorly represented northern portion of the The data is being collected to track the impacts of climate change on Columbia Basin water supply and support community climate adaptation. Monitoring has been implemented on this site. Data will be added soon.

Province of BC, Healthy Watersheds Initiative partners (Stronger BC, Real Estate Foundation of BC, Watersheds BC), Province of BC, Columbia Basin Trust, Canada’s Digital Technology Supercluster partners (Carl Data Solutions, Teck Resources Ltd., Microsoft, Astra Smart Systems, i4C Innovation, the University of Victoria and Genome BC), MakeWay, RBC Tech for Nature, Regional District of Central Kootenay, Sitka Foundation, and the Vancouver Foundation.
DOI: 10.5517/ccdc.csd.cc2ftsqs
title: CCDC 2259116: Experimental Crystal Structure Determination

description: Related Article: Qin Wang, Laura Abella, Yang-Rong Yao, Yingjing Yan, Daniel Torrens, Qingyu Meng, Shangfeng Yang, Josep M. Poblet, Antonio Rodríguez-Fortea, Ning Chen|2023|Inorg.Chem.|62|12976|doi:10.1021/acs.inorgchem.3c01764
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17909/158e-8q57
title: Observations of the Ultraviolet-Bright Star ZNG 1 in the Globular Cluster M5 (NGC 5904)

description: We have analyzed archival spectra of the hot UV-bright star ZNG 1 in the globular cluster M5 (NGC 5904) obtained with the Far Ultraviolet Spectroscopic Explorer (FUSE) and the Space Telescope Imaging Spectrograph (STIS).  From these data, we derive an effective temperature Teff = $43,000 \pm 1400$ K, a surface gravity log g = $4.47 \pm 0.08$, a rotational velocity v_rot = $157 \pm 12$ \kms, and a mass $M = 0.92 \pm 0.17$ \msun.  The atmosphere is helium-rich (Y = 0.99) and enhanced in CNO (relative to the cluster).  The spectrum exhibits wind features with a terminal velocity near 1400 \kms\ and strong discrete absorptions components (DACs).  The high helium abundance, stellar mass, and rotational velocity suggest that the star is a merger remnant, and its parameters are consistent with models of a pair of merging He-core white dwarfs.
DOI: 10.48511/v606-dy73
title: Summit Lake Level

description: This dataset contains lake level data for Summit Lake level logger. This site is part of the Living Lakes Canada Columbia Basin Water Monitoring Framework program. Summit Lake was selected for monitoring because it is important habitat for the Western Toad, a Schedule 1 Species at Risk under SARA. The data is being collected to track the impacts of climate change on Columbia Basin water supply and support community climate adaptation. Monitoring has been implemented on this site. Data will be added soon.

Funding provided by the Province of BC, Healthy Watersheds Initiative partners (Stronger BC, Real Estate Foundation of BC, Watersheds BC), Province of BC, Columbia Basin Trust, Canada’s Digital Technology Supercluster partners (Carl Data Solutions, Teck Resources Ltd., Microsoft, Astra Smart Systems, i4C Innovation, the University of Victoria and Genome BC), MakeWay, RBC Tech for Nature, Regional District of Central Kootenay, Sitka Foundation, Slocan Valley Legacy Fund, and the Vancouver Foundation.
DOI: 10.15139/s3/cpalhs
title: National Center for Health Statistics (NCHS)

description: NCHS collects, analyzes, and disseminates timely, relevant, and accurate health data and statistics. Our products and services inform the public and guide program and policy decisions to improve our nation's health.
DOI: 10.15139/s3/jvwpwz
title: National Health and Nutrition Examination Survey (NHANES)

description: NHANES is a program of studies designed to assess the health and nutritional status of adults and children in the United States. The survey is unique in that it combines interviews and physical examinations. The National Health and Nutrition Examination Survey (NHANES) is a program of studies designed to assess the health and nutritional status of adults and children in the United States. The survey is unique in that it combines interviews and physical examinations. NHANES is a major program of the National Center for Health Statistics (NCHS). NCHS is part of the Centers for Disease Control and Prevention (CDC) and has the responsibility for producing vital and health statistics for the Nation.
DOI: 10.15139/s3/tfezju
title: National Health Interview Survey (NHIS)

description: NHIS is the principal source of information on the health of the civilian noninstitutionalized population of the United States. The main objective of the NHIS is to monitor the health of the United States population through the collection and analysis of data on a broad range of health topics. A major strength of this survey lies in the ability to categorize these health characteristics by many demographic and socioeconomic characteristics. NHIS data are used widely throughout the Department of Health and Human Services (HHS) to monitor trends in illness and disability and to track progress toward achieving national health objectives. The data are also used by the public health research community for epidemiologic and policy analysis of such timely issues as characterizing those with various health problems, determining barriers to accessing and using appropriate health care, and evaluating Federal health programs.
DOI: 10.15139/s3/itgqpf
title: National Vital Statistics System

description: The National Vital Statistics System (NVSS) an inter-governmental data sharing in Public Health provides the most complete data on births and deaths in the United States. The National Vital Statistics System is the oldest and most successful example of inter-governmental data sharing in Public Health and the shared relationships, standards, and procedures form the mechanism by which NCHS collects and disseminates the Nation's official vital statistics. These data are provided through contracts between NCHS and vital registration systems operated in the various jurisdictions legally responsible for the registration of vital events- births, deaths, marriages, divorces, and fetal deaths. Vital statistics data are also available online.