cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.w4vune
title: Occurrence Download

description: A dataset containing 34669 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oeceoclades maculata (Lindl.) Lindl."
 ]
}

 The dataset includes 34669 records from 291 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000755-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2kzuxt
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-82.91658 35.26464,-82.76571 35.26464,-82.76571 35.37672,-82.91658 35.37672,-82.91658 35.26464))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus Latreille, 1802",
 "Year 2018-2018"
 ]
}

 The dataset includes 60 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000757-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.55m9p6
title: Occurrence Download

description: A dataset containing 380 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Apalis fuscigularis Moreau, 1938"
 ]
}

 The dataset includes 380 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000759-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p3zc57
title: Occurrence Download

description: A dataset containing 1261 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Yucca filifera Chabaud"
 ]
}

 The dataset includes 1261 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000758-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13285840
title: Identification of early genes in the pathophysiology of fibrotic interstitial lung disease in a new model of pulmonary fibrosis

description: Some interstitial lung diseases involve pulmonary fibrosis, which is a process that is characterized by the excessive and abnormal accumulation of extracellular matrix in the pulmonary interalveolar space. Although the current anti-fibrotic therapy aims at slowing down the progression of pulmonary fibrosis, it does not reverse it, and many of the drugs that were identified in basic-research studies failed in clinical phases, mainly because of the lack of a model that can recapitulate the pathophysiological mechanisms of human pulmonary fibrosis. We developed a novel experimental model of pulmonary fibrosis induced by a cocktail of molecules on an air/liquid interface culture of mouse embryonic lung explants. Histological analyses revealed a pattern of usual interstitial pneumonia, the worst-prognosis form of pulmonary fibrosis. We performed a transcriptomics analysis at the single-cell level after the induction of fibrosis and before any histological signs of fibrosis could be observed. The results revealed increased expression of several gene families that are involved in early inflammation, fibrosis and iron homeostasis, as well as potential new genetic targets.

This Zenodo repository includes original datasets of single cell RNA sequencing, analysis R scripts, final dataset/markers, and HTML codes for the interactive 3D UMAP and VolcanoPlot.
DOI: 10.5281/zenodo.13285841
title: Identification of early genes in the pathophysiology of fibrotic interstitial lung disease in a new model of pulmonary fibrosis

description: Some interstitial lung diseases involve pulmonary fibrosis, which is a process that is characterized by the excessive and abnormal accumulation of extracellular matrix in the pulmonary interalveolar space. Although the current anti-fibrotic therapy aims at slowing down the progression of pulmonary fibrosis, it does not reverse it, and many of the drugs that were identified in basic-research studies failed in clinical phases, mainly because of the lack of a model that can recapitulate the pathophysiological mechanisms of human pulmonary fibrosis. We developed a novel experimental model of pulmonary fibrosis induced by a cocktail of molecules on an air/liquid interface culture of mouse embryonic lung explants. Histological analyses revealed a pattern of usual interstitial pneumonia, the worst-prognosis form of pulmonary fibrosis. We performed a transcriptomics analysis at the single-cell level after the induction of fibrosis and before any histological signs of fibrosis could be observed. The results revealed increased expression of several gene families that are involved in early inflammation, fibrosis and iron homeostasis, as well as potential new genetic targets.

This Zenodo repository includes original datasets of single cell RNA sequencing, analysis R scripts, final dataset/markers, and HTML codes for the interactive 3D UMAP and VolcanoPlot.
DOI: 10.5281/zenodo.15079882
title: QuickFF forcefield files for metal organic frameworks, LAMMPS input format (Qff_forcefields.zip)

description: This zip file contains structures and flexible force field parameters for 5418 metal organic frameworks (MOFs). We sourced the MOF structures from the Quantum MOF (QMOF) database of Rosen et al. (https://doi.org/10.1016/j.matt.2021.02.015). The QMOF database contains 14204 DFT-optimized MOF structures (sourced previously from the Cambridge Structural Database). We performed DFT vibrational frequency calculations on the MOF structures using the Vienna Ab Initio Simulations Package (VASP). The parameters used for our DFT calculations were consistent with those used by Rosen et al.  We fit flexible force field parameters for each MOF using the QuickFF software (https://doi.org/10.1002/jcc.25173), based on the DFT Hessian obtained from vibrational frequency calculations. QuickFF fits the flexible bond terms while taking into account classical force field components, including electrostatic and Lennard Jones (LJ) potentials. Density Derived Electrostatic and Chemical 6 (DDEC6) partial atomic charges were used along with universal force field (UFF) van der Waals parameters for the MOF atoms. The TraPPE force field parameters were used for the CO2 atoms. Force fields were successfully obtained for 5418 MOFs and used to simulate CO2 sorption and self-diffusion.  The dataset deposited here contains the structures and QuickFF force field parameters for the MOFs (LAMMPS input files).
DOI: 10.5281/zenodo.15079883
title: QuickFF forcefield files for metal organic frameworks, LAMMPS input format (Qff_forcefields.zip)

description: This zip file contains structures and flexible force field parameters for 5418 metal organic frameworks (MOFs). We sourced the MOF structures from the Quantum MOF (QMOF) database of Rosen et al. (https://doi.org/10.1016/j.matt.2021.02.015). The QMOF database contains 14204 DFT-optimized MOF structures (sourced previously from the Cambridge Structural Database). We performed DFT vibrational frequency calculations on the MOF structures using the Vienna Ab Initio Simulations Package (VASP). The parameters used for our DFT calculations were consistent with those used by Rosen et al.  We fit flexible force field parameters for each MOF using the QuickFF software (https://doi.org/10.1002/jcc.25173), based on the DFT Hessian obtained from vibrational frequency calculations. QuickFF fits the flexible bond terms while taking into account classical force field components, including electrostatic and Lennard Jones (LJ) potentials. Density Derived Electrostatic and Chemical 6 (DDEC6) partial atomic charges were used along with universal force field (UFF) van der Waals parameters for the MOF atoms. The TraPPE force field parameters were used for the CO2 atoms. Force fields were successfully obtained for 5418 MOFs and used to simulate CO2 sorption and self-diffusion.  The dataset deposited here contains the structures and QuickFF force field parameters for the MOFs (LAMMPS input files).
DOI: 10.15468/dl.2k65dn
title: Occurrence Download

description: A dataset containing 132 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dioscorea membranacea Pierre ex Prain & Burkill"
 ]
}

 The dataset includes 132 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000760-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15085027
title: SUPPLEMENTARY MATERIAL for High operational functionality nanofluids from choline chloride, ethylene glycol, and multi-walled carbon nanotubes – economical substitutes for ionanofluids

description: Supplementary Material for High operational functionality nanofluids from choline chloride, ethylene glycol, and multi-walled carbon nanotubes – economical substitutes for ionanofluids, Journal of Molecular Liquids 2024, 409, 125551. DOI: 10.1016/j.molliq.2024.125551.

Supplementary Material contains 3 figures, 5 tables, and 7 equations: # Figures S1–S3, # Tables S1–S5, # Equations (S1)–(S7).
DOI: 10.5281/zenodo.15085028
title: SUPPLEMENTARY MATERIAL for High operational functionality nanofluids from choline chloride, ethylene glycol, and multi-walled carbon nanotubes – economical substitutes for ionanofluids

description: Supplementary Material for High operational functionality nanofluids from choline chloride, ethylene glycol, and multi-walled carbon nanotubes – economical substitutes for ionanofluids, Journal of Molecular Liquids 2024, 409, 125551. DOI: 10.1016/j.molliq.2024.125551.

Supplementary Material contains 3 figures, 5 tables, and 7 equations: # Figures S1–S3, # Tables S1–S5, # Equations (S1)–(S7).
DOI: 10.15468/dl.x8h99e
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polybia occidentalis grenadensis Richards, 1951"
 ]
}

 The dataset's 1 records were derived from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000751-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15784/601916
title: Gonad and skin histology of Trematomus loennbergii infected by Notoxcellia sp.

description: Gonad and skin histology of Trematomus loennbergii infected by Notoxcellia sp.
DOI: 10.15468/dl.v6kmqb
title: Occurrence Download

description: A dataset containing 126 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Periophthalmus waltoni Koumans, 1941"
 ]
}

 The dataset includes 126 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000762-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.76ye7y
title: Occurrence Download

description: A dataset containing 8548 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Brosimum alicastrum Sw."
 ]
}

 The dataset includes 8548 records from 132 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000763-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gf5jhn
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CAN.12_1",
 "TaxonKey is Diporeia hoyi (S.I.Smith, 1874)"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000765-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y5p8hk
title: Occurrence Download

description: A dataset containing 37757985 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-116.02405 25.20962,-107.38996 25.20962,-107.38996 34.87032,-116.02405 34.87032,-116.02405 25.20962))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 37757985 records from 1639 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000739-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111326200
title: Codex Climaci Rescriptus: Ladder of Ascent by John Climacus, MS.000149.1-.86

description: [Text Description:] Codex Climaci Rescriptus: Syriac translation of Ladder of Divine Ascent by John Climacus, upper text ❧ [Text or Publication Number Note:] MS.000149.1-.86 ❧ [Excavation Description:] Found at St. Catherine's Monastery ❧ [Medium:] Parchment ❧ [Script Note:] Syriac ❧ [Physical Object Description:] 137 folios; 9.06 x 14.56 in. (23 x 37 cm); vellum with ink ❧ [Physical Object Note:] Palimpsest
DOI: 10.25549/inscriptifact-ouc111326237
title: Codex Climaci Rescriptus: Ladder of Ascent by John Climacus, MS.000149.1-.86

description: [Text Description:] Codex Climaci Rescriptus: Syriac translation of Ladder of Divine Ascent by John Climacus, upper text ❧ [Text or Publication Number Note:] MS.000149.1-.86 ❧ [Excavation Description:] Found at St. Catherine's Monastery ❧ [Medium:] Parchment ❧ [Script Note:] Syriac ❧ [Physical Object Description:] 137 folios; 9.06 x 14.56 in. (23 x 37 cm); vellum with ink ❧ [Physical Object Note:] Palimpsest
DOI: 10.15468/dl.f65dxt
title: Occurrence Download

description: A dataset containing 616 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euglyphis libnites (Druce, 1897)"
 ]
}

 The dataset includes 616 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013936-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oie8ra
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Japan",
 "Geometry POLYGON((124.88089 27.14986,158.04499 27.14986,158.04499 40.40811,124.88089 40.40811,124.88089 27.14986))",
 "HasCoordinate is true",
 "TaxonKey is Argyreus hyperbius (Linnaeus, 1763)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018044-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111325532
title: Latin Manuscript with Illuminations, MS.000136

description: [Text Description:] Latin Manuscript with Illuminations ❧ [Text or Publication Number Note:] MS.000136 ❧ [Medium:] Parchment ❧ [Script Note:] Latin ❧ [Physical Object Description:] Folios approx. 24 x 35 cm ❧ [Physical Object Note:] Vellum with ink, red and black (now oxidized to brown). ❧ [Physical Object Note:] Many small illuminated capital letters on each page. Some larger, more ornate illuminations.
DOI: 10.15468/dl.bne2x6
title: Occurrence Download

description: A dataset containing 473 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Lunella cinerea (Born, 1778)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 473 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068723-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s2us67
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is India",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is NE",
 "PublishingOrg is one of (da86174a-a605-43a4-a5e8-53d484152cd3, 28eb1a3f-1c15-4a95-931a-4af90ecb574d, 43a26bbf-466a-4335-96cc-01d0656c614a, b9ae0aa9-7f74-4f8c-b335-960d1f2f76bc, 62431bdf-fa0c-452b-afce-be14884a47ff, 4a19e429-8f13-478e-86d7-93adb7534524, 0870a77b-587c-4369-a8ed-bc3d347b8e1c, f50525ea-b8c7-44ba-8d50-149b24421dda, 98e934b0-5f31-11de-b67e-b8a03c50a862, 17726825-3aa2-4fbc-b0e3-303d3fc5702f)",
 "TaxonKey is Andrographis paniculata (Burm.fil.) Nees"
 ]
}

 The dataset's 1 records were derived from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0142506-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qfh37t
title: Occurrence Download

description: A dataset containing 3136 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lindera communis Hemsl."
 ]
}

 The dataset includes 3136 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0142520-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zecutk
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crocus cartwrightianus Herb."
 ]
}

 The dataset includes 68 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053939-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111324956
title: Cuneiform Tablet

description: [Text Description:] Cuneiform Tablet, Administrative Tag, with Seal Impressions ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Clay tablet with cuneiform script, roughly triangular In shape.
DOI: 10.15468/dl.yu64t5
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Piptadenia uliginosa Britton & Killip"
 ]
}

 The dataset includes 13 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005957-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.362rxh
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Olgaea leucophylla (Turcz.) Iljin"
 ]
}

 The dataset includes 66 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237103-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e6f4jg
title: Occurrence Download

description: A dataset containing 690725 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 690725 records from 251 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033289-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d7b7t8
title: Occurrence Download

description: A dataset containing 37900 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Ampullaceana balthica (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 37900 records from 217 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068717-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111330495
title: Wycliffite New Testament, MS.000340

description: [Text Description:] New Testament translation by John Wycliffe ❧ [Text or Publication Number Note:] MS.000340 ❧ [Medium:] Parchment ❧ [Script Note:] Gothic ❧ [Physical Object Description:] 218 folios; 9 x 6.1 x 3.1 in. (22.9 x 15.5 x 8 cm) ❧ [Physical Object Note:] Vellum with ink. Two columns of 36 lines, visible ruler lines. Leather binding with brass corner pieces and center bosses, letters "A C" stamped on either side. ❧ [Physical Object Note:] Illuminated initials in burnished gold at beginning of each book of the New Testament.
DOI: 10.15468/dl.8nbwhg
title: Occurrence Download

description: A dataset containing 8817 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dasypus novemcinctus Linnaeus, 1758"
 ]
}

 The dataset includes 8817 records from 249 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007883-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g8b9uh
title: Occurrence Download

description: A dataset containing 226 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centaurea rhaetica Moritzi",
 "HasCoordinate is true"
 ]
}

 The dataset includes 226 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098570-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9utemu
title: Occurrence Download

description: A dataset containing 311484 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Impatiens L.",
 "HasCoordinate is True",
 "BasisOfRecord is one of (Fossil, Human Observation, Machine Observation, Observation, Specimen)"
 ]
}

 The dataset includes 311484 records from 967 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068734-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qxk6q6
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rumex alpinus × obtusifolius"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042761-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.52uts4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pilosella dichotoma × officinarum subsp. peleteriana"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042762-241126133413365/datasets/export for details.
DOI: 10.15468/dl.q4hcyr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rumex alpinus × aquaticus"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042763-241126133413365/datasets/export for details.