cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34943/f03126cf-eaef-451d-a0df-14c1baebf717
title: Strait of Georgia East Oxygen Sensor Deployed 2025-03-19

description: The Sea-Bird SBE 63 Dissolved Oxygen Sensor 630281 was deployed on 2025-03-19 at Strait of Georgia East. Strait of Georgia East refers to an eastern area of the Strait of Georgia. This device is a Oxygen Sensor. Oxygen sensors measure dissolved oxygen concentration in seawater. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/3ba8f2ec-ed72-4be6-8f70-523598b5713f
title: Strait of Georgia East Turbidity Meter Deployed 2025-03-19

description: The WET Labs ECO-NTUS 762 was deployed on 2025-03-19 at Strait of Georgia East. Strait of Georgia East refers to an eastern area of the Strait of Georgia. This device is a Turbidity Meter. Turbidity meters are sensors that detect scattered light from suspended particles in water. The amount of scattered light that reaches the detector is proportional to the turbidity or particle concentration in the water. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.15468/dl.myt7jr
title: Occurrence Download

description: A dataset containing 1082 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Nemoura arctica Esben-Petersen, 1910, Nemoura arctica mongolica, Nemoura trispinosa Claassen, 1923)"
 ]
}

 The dataset includes 1082 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002335-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15132359
title: ХИМИЧЕСКИЕ ДОБАВКИ В ТЕХНОЛОГИИ МОНОЛИТНОГО БЕТОНА
DOI: 10.5281/zenodo.15132360
title: ХИМИЧЕСКИЕ ДОБАВКИ В ТЕХНОЛОГИИ МОНОЛИТНОГО БЕТОНА
DOI: 10.5281/zenodo.10827585
title: Most human DNA replication initiation is dispersed throughout the genome with only a minority within previously identified initiation zones

description: File names indicate:



The cell lines used (HeLa-S3 denoted as HeLa; hTert-RPE1 denoted as RPE1) as the first four characters of the file name;

TE in the file name indicates that the sample was subjected to nCATS target enrichment sequencing (all other files are from genome-wide sequencing);

BAM files include both alignment (to the GRCh38 human genome assembly) and BrdU modification probabilities in the mod.bam format;

BED files list the location of left/right replication forks; initiation sites; termination sites as indicated.


 

Experimental protocol:



HeLa-S3 (adherent) and hTERT-RPE1 were maintained in DMEM Glutamax (HeLa-S3) or DMEM/F12 Glutamax (hTERT-RPE1, both Gibco), with the addition of 10% foetal bovine serum (Sigma) and 1% penicillin/streptomycin (Gibco). Cells were maintained at 70% confluency in 5% CO2 at 37 °C.

Cells were treated with sequential addition of 0.5 µM BrdU every 2.5 minutes until 12 µM, followed by incubated for a further 1 hr at 12 µM BrdU

High molecular weight genomic DNA extraction protocol

For the target enrichment (TE; via nCATS) samples genomic DNA was prepared for sequencing with this protocol: dx.doi.org/10.17504/protocols.io.bmi5k4g6

Libraries were prepared with ONT Ligation Sequencing Kit (SQK-LSK109 or SQK-ULK001) 


 

Data processing steps:



Basecalling was perform with guppy v6.1.5

Aligned reads to hg38 reference using minimap2 v2.17

Detected BrdU in reads using DNAscent v2.0.2

BrdU probabilities converted to mod.bam format with detect_to_modBAM script

BrdU gradients, replication fork directions, replication initiation and replication termination sites identified with a custom Rscript
DOI: 10.5281/zenodo.10827586
title: Most human DNA replication initiation is dispersed throughout the genome with only a minority within previously identified initiation zones

description: File names indicate:



The cell lines used (HeLa-S3 denoted as HeLa; hTert-RPE1 denoted as RPE1) as the first four characters of the file name;

TE in the file name indicates that the sample was subjected to nCATS target enrichment sequencing (all other files are from genome-wide sequencing);

BAM files include both alignment (to the GRCh38 human genome assembly) and BrdU modification probabilities in the mod.bam format;

BED files list the location of left/right replication forks; initiation sites; termination sites as indicated.


 

Experimental protocol:



HeLa-S3 (adherent) and hTERT-RPE1 were maintained in DMEM Glutamax (HeLa-S3) or DMEM/F12 Glutamax (hTERT-RPE1, both Gibco), with the addition of 10% foetal bovine serum (Sigma) and 1% penicillin/streptomycin (Gibco). Cells were maintained at 70% confluency in 5% CO2 at 37 °C.

Cells were treated with sequential addition of 0.5 µM BrdU every 2.5 minutes until 12 µM, followed by incubated for a further 1 hr at 12 µM BrdU

High molecular weight genomic DNA extraction protocol

For the target enrichment (TE; via nCATS) samples genomic DNA was prepared for sequencing with this protocol: dx.doi.org/10.17504/protocols.io.bmi5k4g6

Libraries were prepared with ONT Ligation Sequencing Kit (SQK-LSK109 or SQK-ULK001) 


 

Data processing steps:



Basecalling was perform with guppy v6.1.5

Aligned reads to hg38 reference using minimap2 v2.17

Detected BrdU in reads using DNAscent v2.0.2

BrdU probabilities converted to mod.bam format with detect_to_modBAM script

BrdU gradients, replication fork directions, replication initiation and replication termination sites identified with a custom Rscript
DOI: 10.15468/dl.6tgvc4
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agrilus auriventris Saunders, 1873"
 ]
}

 The dataset includes 35 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002337-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13953084
title: Data and processing code for Depth-averaged Subtidal and Tidal Circulation off of a Rocky Shore

description: Data and code in order to recreate all figures in "Depth-averaged Subtidal and Tidal Circulation off of a Rocky Shore". 

JGR_data: all data to remake figures 

JGR_functions: all functions to remake figures 

Copy_of_make_JGR_figs.m: script to remake figures
DOI: 10.5281/zenodo.13953085
title: Data and processing code for Depth-averaged Subtidal and Tidal Circulation off of a Rocky Shore

description: Data and code in order to recreate all figures in "Depth-averaged Subtidal and Tidal Circulation off of a Rocky Shore". 

JGR_data: all data to remake figures 

JGR_functions: all functions to remake figures 

Copy_of_make_JGR_figs.m: script to remake figures
DOI: 10.15468/dl.bk7qhf
title: Occurrence Download

description: A dataset containing 3150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Santolina rosmarinifolia L.",
 "Continent is Europe",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 3150 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002339-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14285673
title: Stronger mean urban heat islands, smaller temperature variances, and enhanced temperature persistence lead to more heatwaves in cities — supporting data

description: Supporting data for “Stronger mean urban heat islands, smaller temperature variances, and enhanced temperature persistence lead to more heatwaves in cities”.

Included are outputs from the Geophysical Fluid Dynamics Laboratory (GFDL) land model LM4, coupled with a newly developed and evaluated urban canopy model (UCM), and the Community Land Model (CLM), which is the land component of the Community Earth System Model (CESM).

For the GFDL model, we conducted the simulations at 2 latitude by 2.5 longitude from 1700 to 2000, with the period of 1700-1948 for spin-up, and focused on the simulations of the latest 40-year period from 1961 to 2000 for our analysis. For the CLM model, we conducted the simulations (uncoupled to the atmospheric model) at 0.9 latitude by 1.25 longitude based on an initial condition provided by the CESM, which is spin-up by the Global Soil Wetness Project Phase 3 atmospheric forcing from 1970 to 2010. For the analysis, we focused on the simulations of the latest 40-year period from 1971 to 2010.

Analysis_codes.zip contains the analysis code. It is provided as-is with no guarantee of usability.
DOI: 10.5281/zenodo.15132290
title: Guía de procedimiento de cálculo interdisciplinario para Mini reactores de cuasi fusión nuclear de ZnO y SnO con interfases y pantallas de SmB6 de control electromagnético tipo radar cuántico Comparados con aprovechamientos hidrocinéticos Tipo confinados canalizados de vórtices simétricos de Rankine

description: Esta propuesta presenta una tecnología avanzada de confinamiento cuántico autoinducido basada en cápsulas helicoidales estructuradas y recubiertas con SmB₆. Se integran fenómenos QED, MHD y efectos topológicos para estabilizar emulsiones activas de óxidos de zinc o estaño.
DOI: 10.5281/zenodo.15132291
title: Guía de procedimiento de cálculo interdisciplinario para Mini reactores de cuasi fusión nuclear de ZnO y SnO con interfases y pantallas de SmB6 de control electromagnético tipo radar cuántico Comparados con aprovechamientos hidrocinéticos Tipo confinados canalizados de vórtices simétricos de Rankine

description: Esta propuesta presenta una tecnología avanzada de confinamiento cuántico autoinducido basada en cápsulas helicoidales estructuradas y recubiertas con SmB₆. Se integran fenómenos QED, MHD y efectos topológicos para estabilizar emulsiones activas de óxidos de zinc o estaño.
DOI: 10.15468/dl.44utzp
title: Occurrence Download

description: A dataset containing 1998 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sphaerophysa salsula (Pall.) DC."
 ]
}

 The dataset includes 1998 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002340-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uyb3gh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Database of Vascular Plants of Canada (VASCAN)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002342-250402121839773/datasets/export for details.
DOI: 10.6084/m9.figshare.28724240
title: Supplementary Material for: Radiologically Assessed Stapes Footplate Thickness and Audiologic Outcomes in Patients with Otosclerosis

description: Introduction
Otosclerosis is a known cause of particularly conductive hearing loss of variable extent. Radiological examination reveals footplate thickening in addition to heterogeneously distributed hypodense foci. The objective of this study is to investigate the correlation between a thickened stapes footplate and its association with perioperative audiometric findings and postoperative complications. 
Methods
This was a retrospective data analysis conducted at a single tertiary referral center on 63 surgical confirmed otosclerotic ears from 56 patients. Stapes footplate thickness was measured in the stapes axial plane of a preoperative computed tomography scan. Measured stapes footplate thickness was assessed regarding its relationship between pre- and postoperative audiometric data and vestibulocochlear complications associated with stapedotomy.
Results
Radiological assessment of stapes footplate thickness demonstrated a considerable variation between otosclerotic ears, with a mean value of 0.85 mm (range 0.5 to 1.37 mm). No statistically significant correlation was identified between pre- and postoperative audiometric data for air-bone-gap, air- and bone-conduction in the overall population or within subgroups. One case of postoperative inner ear hearing loss (PTA BC 26.3 to 37.5 dB HL), resulting in severe combined hearing loss, occurred 40 days after uneventful surgery (footplate thickness 0.79). Regardless of footplate thickness, no further cases of postoperative sensorineural hearing loss were reported. Postoperative vertigo was observed in 20 patients, none of whom showed pathological findings in clinical head impulse testing or exhibited spontaneous nystagmus, without association with footplate thickness (t(61) = 0.83, p = 0.41). Significant improvements regarding the air-bone-gap (26.45 dB HL, SD 9.24 to 7.70 dB HL, SD 5.69, p &lt; 0.0001), as well as air- (48.65 dB HL, SD 14.24 to 26.29 dB HL, SD 10.24, p &lt; 0.0001) and bone-conduction (22.20 dB HL, SD 9.20 to 18.13 dB HL, SD 10.11, p &lt; 0.0001) pure tone average thresholds was observed from last pre- to last postoperative audiometric data after stapedotomy. Comparison of first to last postoperative audiometric data revealed significant improvement in air-bone-gap (10,74 dB HL, SD 7.20 to 7.70 dB HL, SD 5.691, p = 0.0002) as well as air- (31.63 dB HL, SD 12.30 to 26.29 dB HL, SD 10.24, p &lt; 0.0001) and bone-conduction (20.08 dB HL, SD 10.26 to 18.13 dB HL, SD 20.11, p = 0.011) at a mean postoperative follow-up time of 12.6 months, SD 9 months (2.4 to 37.3 months). 
Conclusion: 
Stapes footplate thickness in otosclerosis cases is not correlated with presurgical or postoperative hearing, nor with the incidence of postoperative complications. Stapedotomy can be performed safely regardless of the thickness of the stapes footplate.
DOI: 10.6084/m9.figshare.28724240.v1
title: Supplementary Material for: Radiologically Assessed Stapes Footplate Thickness and Audiologic Outcomes in Patients with Otosclerosis

description: Introduction
Otosclerosis is a known cause of particularly conductive hearing loss of variable extent. Radiological examination reveals footplate thickening in addition to heterogeneously distributed hypodense foci. The objective of this study is to investigate the correlation between a thickened stapes footplate and its association with perioperative audiometric findings and postoperative complications. 
Methods
This was a retrospective data analysis conducted at a single tertiary referral center on 63 surgical confirmed otosclerotic ears from 56 patients. Stapes footplate thickness was measured in the stapes axial plane of a preoperative computed tomography scan. Measured stapes footplate thickness was assessed regarding its relationship between pre- and postoperative audiometric data and vestibulocochlear complications associated with stapedotomy.
Results
Radiological assessment of stapes footplate thickness demonstrated a considerable variation between otosclerotic ears, with a mean value of 0.85 mm (range 0.5 to 1.37 mm). No statistically significant correlation was identified between pre- and postoperative audiometric data for air-bone-gap, air- and bone-conduction in the overall population or within subgroups. One case of postoperative inner ear hearing loss (PTA BC 26.3 to 37.5 dB HL), resulting in severe combined hearing loss, occurred 40 days after uneventful surgery (footplate thickness 0.79). Regardless of footplate thickness, no further cases of postoperative sensorineural hearing loss were reported. Postoperative vertigo was observed in 20 patients, none of whom showed pathological findings in clinical head impulse testing or exhibited spontaneous nystagmus, without association with footplate thickness (t(61) = 0.83, p = 0.41). Significant improvements regarding the air-bone-gap (26.45 dB HL, SD 9.24 to 7.70 dB HL, SD 5.69, p &lt; 0.0001), as well as air- (48.65 dB HL, SD 14.24 to 26.29 dB HL, SD 10.24, p &lt; 0.0001) and bone-conduction (22.20 dB HL, SD 9.20 to 18.13 dB HL, SD 10.11, p &lt; 0.0001) pure tone average thresholds was observed from last pre- to last postoperative audiometric data after stapedotomy. Comparison of first to last postoperative audiometric data revealed significant improvement in air-bone-gap (10,74 dB HL, SD 7.20 to 7.70 dB HL, SD 5.691, p = 0.0002) as well as air- (31.63 dB HL, SD 12.30 to 26.29 dB HL, SD 10.24, p &lt; 0.0001) and bone-conduction (20.08 dB HL, SD 10.26 to 18.13 dB HL, SD 20.11, p = 0.011) at a mean postoperative follow-up time of 12.6 months, SD 9 months (2.4 to 37.3 months). 
Conclusion: 
Stapes footplate thickness in otosclerosis cases is not correlated with presurgical or postoperative hearing, nor with the incidence of postoperative complications. Stapedotomy can be performed safely regardless of the thickness of the stapes footplate.
DOI: 10.15468/dl.gv4yst
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euwallacea interjectus Wood & Bright, 1992",
 "HasCoordinate is true"
 ]
}

 The dataset includes 34 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002344-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h22xt8
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xyleborinus andrewesi Wood & Bright, 1992",
 "HasCoordinate is true"
 ]
}

 The dataset includes 16 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002345-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5rz59e
title: Occurrence Download

description: A dataset containing 27320 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Loxechinus albus (Molina, 1782)"
 ]
}

 The dataset includes 27320 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002346-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10972973
title: Data for "Structure, short-range order, and phase stability of the Al$_x$CrFeCoNi high-entropy alloy: Insights from a perturbative, DFT-based analysis"

description: Data associated with "Structure, short-range order, and phase stability of the AlxCrFeCoNi high-entropy alloy: Insights from a perturbative, DFT-based analysis", published in npj Comput. Mater. 10, 271 (2024).
DOI: 10.5281/zenodo.10972974
title: Data for "Structure, short-range order, and phase stability of the Al$_x$CrFeCoNi high-entropy alloy: Insights from a perturbative, DFT-based analysis"

description: Data associated with "Structure, short-range order, and phase stability of the AlxCrFeCoNi high-entropy alloy: Insights from a perturbative, DFT-based analysis", published in npj Comput. Mater. 10, 271 (2024).
DOI: 10.71646/ftwx0p
title: Surface Water Quality

description: Provides data on surface water quality, flow, and levels across major rivers and reservoirs in India. The Water Resources Information System, popularly known as India-WRIS, was initiated through a Memorandum of Understanding signed on December 3rd, 2008, between the Central Water Commission (CWC), Ministry of Water Resources, River Development, and Ganga Rejuvenation (now the Ministry of Jal Shakti), and the Indian Space Research Organization (ISRO), Department of Space. The aim of India-WRIS is to serve as a repository of nationwide water resources data, providing a 'Single Window' source of updated information on water resources and allied themes. It offers valuable insights into surface water, groundwater, land resources, and more. Data on the flow and level of surface water are collected across 4824 river point stations spanning all states and Union Territories in India by the Central Water Commission (CWC). This information is accessible through the Water Resources Information Systems portal. The data is categorized at administrative entities (up to districts), basin and river levels, and is presented across daily, monthly, and annual time-series since 1959. This data is particularly valuable for studies involving floods and hydrological droughts.
description: Open Access
DOI: 10.6084/m9.figshare.28724213
title: Free shots data.docx

description: Comparison of basketball shooting success rates for three groups.
DOI: 10.15468/dl.buqpcw
title: Occurrence Download

description: A dataset containing 134060 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Living Specimen, Occurrence evidence)",
 "Geometry POLYGON((-34.64571 12.81217,133.64571 12.81217,133.64571 80.18783,-34.64571 80.18783,-34.64571 12.81217))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Martes foina (Erxleben, 1777)",
 "Year 1900-2025"
 ]
}

 The dataset includes 134060 records from 1262 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002306-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.acg6sp
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eurytoma caraganae Nikol'skaya, 1952",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019530-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.64xthd
title: Occurrence Download

description: A dataset containing 1004 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Trifolium rueppellianum Fresen.)"
 ]
}

 The dataset includes 1004 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019531-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mxk44c
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-135.95228 59.45423,-132.74343 60.70514,-139.92255 69.82407,-144.16476 67.82987,-141.68107 59.52675,-135.95228 59.45423))",
 "TaxonKey is Schoenomyza dorsalis Loew, 1872"
 ]
}

 The dataset includes 75 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019532-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8nuvpz
title: Occurrence Download

description: A dataset containing 44412 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Trifolium scabrum L.)"
 ]
}

 The dataset includes 44412 records from 795 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019533-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.