cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11555637.v1
title: Data independent acquisition mass spectrometry of irradiated mouse lung endothelial cells reveals a STAT-associated inflammatory response

description: <b>Purpose:</b> Pulmonary inflammation is an adverse consequence of radiation therapy in breast cancer. The aim of this study was to elucidate biological pathways leading to this pathology. <b>Materials and methods:</b> Lung endothelial cells were isolated 24 h after thorax-irradiation (sham or 10 Gy X-ray) from female C57Bl/6 mice and cultivated for 6 days. <b>Results:</b> Quantitative proteomic analysis of lung endothelial cells was done using data independent acquisition (DIA) mass spectrometry. The data were analyzed using Ingenuity Pathway Analysis and STRINGdb. In total, 4220 proteins were identified using DIA of which 60 were dysregulated in the irradiated samples (fold change ≥2.00 or ≤0.50; <i>q</i>-value &lt;0.05). Several (12/40) upregulated proteins formed a cluster of inflammatory proteins with STAT1 and IRF3 as predicted upstream regulators. The several-fold increased expression of STAT1 and STAT-associated ISG15 was confirmed by immunoblotting. The expression of antioxidant proteins SOD1 and PRXD5 was downregulated suggesting radiation-induced oxidative stress. Similarly, the phosphorylated (active) forms of STING and IRF3, both members of the cGAS/STING pathway, were downregulated. <b>Conclusions:</b> These data suggest the involvement of JAK/STAT and cGas/STING pathways in the genesis of radiation-induced lung inflammation. These pathways may be used as novel targets for the prevention of radiation-induced lung damage.
DOI: 10.6084/m9.figshare.1524247.v2
title: Anadenanthera colubrina

description: Pollen from Brazilian Savannah (Cerrado), Mato Grosso do Sul state. The images were used for training and test software based on computer vision and machine learning.
DOI: 10.6084/m9.figshare.23792385.v6
title: Underlying Data, Extended data and Total results

description: This file contains Underlying Data, Extended data and Total results of the article entitled "L2 Acquisition of <i>Wh-</i>interrogatives at the Syntax-discourse Interface: Interface Hypothesis again", by Mohammed Shormani
DOI: 10.6084/m9.figshare.23979342.v1
title: CryptoCEN data v1.0.0

description: Data forMJ O'Meara, JR Rapala, CB Nichols, C Alexandre, B Billmyre, JL Steenwyk, A Alspaugh, TR O'MearaCryptoCEN: A Co-Expression Network for <i>Cryptococcus neoformans </i>reveals novel proteins involved in DNA damage repairCode available at https://github.com/maomlab/CalCEN/tree/master/vignettes/CryptoCEN<b>h99_transcript_annotations.tsv</b><i>Cryptococcus neoforman</i> H99 (NCBI Taxon:235443) annotated protein features collected from FungiDB Release 49<b>top_coexp_hits.tsv</b>top 50 CrypoCEN associations for each gene<b>top_coexp_hits_0.05.tsv</b>top CrypoCEN associations for each gene filtered by score &gt; 0.95 and at most 50 per gene<b>Data/estimated_expression_meta.tsv</b>Metadata for RNAseq estimated expression runs<b>Data/estimated_expression.tsv</b>gene by RNA-seq run estimated expression<b>Data/sac_complex_interactions.tsv</b><i>C. neoformans</i> genes that are orthologous to <i>S. cerevisiae</i> genes who's proteins are involved in a protein complex<b>Networks/CryptoCEN_network.tsv</b>Co-expression network<b>Networks/BlastP_network.tsv</b>Protein sequence similarity network<b>Network/CoEvo_network.tsv</b>Co-evolution network
DOI: 10.6084/m9.figshare.4588516.v1
title: Supplementary Material for: Loneliness in Older Black Adults with Human Immunodeficiency Virus Is Associated with Poorer Cognition

description: <b><i>Background:</i></b> The human immunodeficiency virus (HIV) is associated with cognitive impairment, and loneliness is associated with cognitive decline in old age. Older Black adults with HIV may be at particular risk of loneliness due to stigma and lack of social resources. <b><i>Objective:</i></b> We tested the hypotheses that (1) older Black adults with HIV would show greater loneliness than older White adults with HIV, and (2) greater loneliness among older Black adults with HIV would be associated with poorer cognitive function. <b><i>Methods:</i></b> A total of 370 participants (177 with HIV, 193 without HIV; mean age 58.8 years, standard deviation 6.2 years; mean education 13.4 years, standard deviation 2.9 years; 73.9% male, 68.9% Black) in a community-based cross-sectional study of the Rush Center of Excellence on Disparities in HIV and Aging (CEDHA) completed a 5-item self-report scale used to measure emotional loneliness and a battery of cognitive measures. <b><i>Results:</i></b> Contrary to our expectations, older Black adults indicated less overall loneliness than White adults (β = -0.3893, SE = 0.1466, <i>p</i> = 0.0087) in models controlling for the effects of age, education, sex, global cognition, and income. However, in models with cognitive function as the outcome, an interaction between race and loneliness was observed, such that older Black adults who indicated greater loneliness showed poorer cognitive function relative to White adults (β = -0.2736, SE = 0.1138, <i>p</i> = 0.0174). <b><i>Conclusion:</i></b> Older Black adults with HIV reported less loneliness than older White adults; however, the inverse association between loneliness and cognitive function was stronger in Black than White older adults. Additional work is needed to elucidate the mechanisms underlying this interaction.
DOI: 10.6084/m9.figshare.8514155.v1
title: Supplementary Material for: Protocol for the Connected Speech Transcription of Children with Speech Disorders: An Example from Childhood Apraxia of Speech

description: <b><i>Objective:</i></b> While it is known that connected speech has different features to single-word speech, there are currently few recommendations regarding connected speech transcription. This research therefore aimed to develop a clinically feasible protocol for connected speech transcription. The protocol was then used to assist with description of the connected speech of children with childhood apraxia of speech (CAS), as little is known about their connected speech characteristics. <b><i>Participants and Methods:</i></b> Following a literature review, the Connected Speech Transcription Protocol (CoST-P) was iteratively developed and trialled. The CoST-P was then used to transcribe 50 connected utterances produced by 12 children (aged 6–13 years) with CAS. The characteristics of participants’ connected speech were analysed to capture independent and relational analyses. <b><i>Results:</i></b> The CoST-P was developed, trialled, and determined to have adequate reliability and fidelity. The frequency of inter-word segregation (mean = 29) was higher than intra-word segregation (mean = 4). Juncture accuracy was correlated with intelligibility metrics such as percentage of consonants correct. <b><i>Conclusion:</i></b> Connected speech transcription is challenging. The CoST-P may be a useful resource for speech-language pathologists and clinical researchers. Use of the CoST-P assisted in displaying CAS speech characteristics unique to connected speech (e.g., inter-word segregation and juncture).
DOI: 10.15468/dl.nk4afp
title: Occurrence Download

description: A dataset containing 9292 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Kummerowia striata (Thunb.) Schindl.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 9292 records from 205 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013257-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.10258253.v1
title: Comparison of total phenol content and antioxidant activity of herbal infusions with added Stevia reabaudiana Bertoni

description: Abstract Antioxidant capacity (AC) was determined by the ABTS method and DPPH, and total phenol content (TPC) in dehydrated plant material, in infusions and in residues (plant material after preparing the infusion) of white, black, red, green, spearmint, stevia, lemon grass and chamomile teas to which stevia leaves were added or not added; addition of processed stevia powder was also tested. Three independent experiments were set up: with dehydrated plant material, with infusions and with residues. For the case of dehydrated plant material, white tea had the highest TPC (10813.5 mg GAE/100g) and AC by the ABTS method (1183.3 µM TE/g) and DPPH method (1525.0 µM TE/g). In infusions, black tea had higher TPC (180.82 µg GAE/ml) and AC by the methods ABTS and DPPH (0.6114 and 2.5983 µM TE/ml, respectively). In residues, TPC was higher in white tea, while green tea had the highest AC values. AC of dehydrated plant material increased when stevia leaves were added, according to the DPPH and ABTS methods, but not in residues by ABTS. Addition of stevia leaves in infusions increased AC in white, lemon grass, chamomile and stevia teas by the ABTS method and in spearmint, black, red, and green teas with the DPPH method.
DOI: 10.6084/m9.figshare.17105351.v1
title: Study 1: Dataset and Syntax

description: Study 1<br>
DOI: 10.17632/dv3j9wc59v
title: Keyphrases CS&Math Russian

description: Dataset contains CS/Math articles abstracts (in Russian) obtained from two sources: mathnet.ru and cyberleninka.ru. For each article publication year, journal name, authors, title, keyphrases and abstract  are provided.
DOI: 10.6084/m9.figshare.14350553.v1
title: UX Evaluation Methods Mapping

description: The table has been developed within the Meet-AI project. It presents a wide-range critical analysis of 129 UX evaluation methods (both qualitative and quantitative). These are retrieved from articles published in the ACM Digital Library and Springer Link between 2000 and 2020. The results have then been confronted with the largest repository of UX evaluation methods available at the time of the study, namely All About UX website, to integrate methods eventually missed by the researchers. The evaluation methods are analyzed according to various criteria. Among them: the assessed UX dimension(s); the descriptors within the dimensions - here intended as the items describing the nuances of the overarching dimensions; the collection method(s); and the object(s) of analysis.
DOI: 10.6084/m9.figshare.15046632.v1
title: 2021 Roberson lab SSc all gene overlapping reads

description: Data relevant to a 2021 study of SSc transcriptomes. This file contains counts of all sequencing reads that overlap at least a single base with the start and end of a known gene on the correct strand.<br>
DOI: 10.6084/m9.figshare.16866736.v2
title: cpd_data.csv

description: This dataset includes the surveied occurence ratio of crop pests and diseases at provincial scale in China from 1970 to 2016.
DOI: 10.6084/m9.figshare.25097684.v3
title: <b>10m winter wheat harvested area and planted area distribution map of China for five years (2018-2022)</b>

description: ------ 1. Introductory information ------Title: Mapping 10-m harvested area in the major winter wheat-producing regions of China from 2018 to 2022Format: TIFNaming convention: " ChinaWheatMap10_P_2018.tif" means winter wheat planted area map of 2018, and “ChinaWheatMap10_H_2018.tif" means winter wheat harvested area map of 2018.Authors: Jinkang Hu, Bing Zhang, Dailiang Peng, Jianxi Huang, Wenjuan Zhang, Bin Zhao, Enhui Cheng, Zihang Lou, Shengwei Liu, Songlin Yang, Yunlong Tan, and Yulong LvKey Laboratory of Digital Earth Science, Aerospace Information Research Institute, Chinese Academy of SciencesCorresponding author: Bing ZhangContact Information: hujinkang21@mails.ucas.ac.cn (JK.H.); zhangbing@aircas.ac.cn (B.Z.)------ 2. Data specific information ------The dataset contains winter wheat maps of harvested area and planted area with 10m spatial resolution for five years (2018-2022) over eight provinces. In the datasets, the values equal to one means winter wheat.Software: ArcGIS, QGIS or ENVI are needed to read the dataset.
DOI: 10.6084/m9.figshare.28469018.v1
title: Geochemistry and Foraminifera Databases (Suances Estuary, N Spain) - Irabien et al

description: The files uploaded to this online repository correspond to the manuscript entitled: "<b>Tracing pollution legacies in coastal sedimentary archives after mine closure: Insights from the Suances Estuary, Northern Spain</b>" submitted to <i>Marine Geology</i> and written by María Jesús Irabien, Alejandro Cearreta, José Gómez-Arozamena, Ane García-Artola, Humberto Serrano-García, and Jon Gardoki
DOI: 10.6084/m9.figshare.28930238.v1
title: Dane dla powiatu Chrzanowskiego w latach 2018-2023

description: Wskaźnikowa analiza rozwoju społeczno-gospodarczego gmin powiatu Chrzanowskiego z uwzględnieniem uwarunkowań kulturowych  <br>
DOI: 10.6084/m9.figshare.28986983.v1
title: <b>Bioenergetics of behavioural strategies in desert income and capital breeders</b>

description: Income and capital breeders adopt distinct reproductive strategies based on available resources. Income breeders rely on resources currently accessible in the environment, while capital breeders rely on stored resources. Bioenergetic performance and trade-off models offer predictions about how energy turnover determines animal energy budgets and behavioural decisions.The performance model proposes that high maintenance cost signals high energy turnover, supporting behaviours with high energy demands.Trade-off models,on the other hand, are focused on allocation and compensation between costly behaviours and physiological maintenance. We studied bioenergetics and personality traits of two sympatric rodent species representing distinct reproductive strategies in a harsh desert environment. We found that putative income breeder, roaming forager African hammada jerboa, may operate under performance bioenergetic mechanisms, where high maintenance costs correlate positively with repeatable exploratory behaviour. In contrast, a capital breeder, sedentary hoarder Shaw’s jird, operates under allocation bioenergetic mechanisms, where maintenance cost negatively correlates with the same behaviour. Integrating bioenergetics into the the income-capital breeder concept provides proximate and adaptive predictions about how diversity of reproductive strategies is maintained in resource-limited environments.
DOI: 10.6084/m9.figshare.29046428.v1
title: Matbench discovery test file.

description: Matbench discovery test file of new version AlphaNet.
DOI: 10.17632/frv3g4z8n4
title: Experimental data of lignin recovery from coconut husk using response surface methodology (RSM) through thermal pretreatment process

description: This investigation examines the impact of low nitric acid concentration, temperature, and residue time on the recovery of lignin from coconut husk through a thermal pretreatment process under optimal conditions. Additionally, the RSM response surface methodology is employed to determine the optimal conditions for lignin recovery. The results of the statistical analysis of independent variables, including temperature, time, and nitric acid concentration, indicate that these parameters had a substantial effect on the recovery of lignin. The ANOVA analysis indicates that all independent parameters and the model were statistically significant at the 95% confidence level. The current study's results demonstrated that the highest lignin recovery yield was 85.31%. This was achieved by processing coconut under optimal conditions, which included a low nitric acid concentration of 0.010 M and a temperature of 200 °C for 30 minutes. Furthermore, the thermal pretreatment procedure resulted in the complete conversion of the crystalline cellulose present in the coconut husk to an amorphous form, as demonstrated by the scanning electron microscope (SEM) analysis. Meanwhile, the crystallinity index of solid residue following thermal pretreatment demonstrated a substantial increase of 76.65% in comparison to that of native coconut husk (64.12%). Nevertheless, the lignin that is recovered is utilized as a precursor for the production of high-value products. Consequently, it is crucial to implement a thermal pretreatment process in order to enhance the efficiency of the chemical conversion process.
DOI: 10.17632/k5pp237b98
title: Dreams of Ukrainian female refugees to Poland

description: The data concern the dreams of Ukrainian female refugees to Poland after February 24, 2022. 50 participants of face-to-face interviews answered questions about the content of their dreams from the period of their stay in Poland, especially their most recent dreams, dreams about war, and adaptive dreams. They were also asked about their potential symptoms of Posttraumatic Stress Disorder (PTSD) as defined in DSM-5, as well as demographic information - age, education, and marital status. In the dataset, the symptoms of dissociative specification (depersonalization and derealization) and the occurrence of nightmares were indicated additionally, as they are helpful in assessing the level of the participants' traumatization. This dataset of quantitative findings enables detecting several kinds of relationship between the Ukrainian women's dream types, their posttraumatic symptoms, and their demographic situation.
DOI: 10.6084/m9.figshare.12839240.v6
title: A band-gap database for semiconducting inorganic materials calculated with hybrid functional

description: Highly accurate band-gap database for 10,481 inorganic compounds with <i>E</i><sub>g</sub> ranging from 0 to 5 eV
DOI: 10.6084/m9.figshare.21972482.v1
title: Lilium tsingtauense，the first complete mitochondrial genome of Lilium

description: <em>Lilium</em> is a horticultural flower with significant commercial value that combines ornamental, edible and medicinal values. The <em>Lilium</em> chloroplast genome has been reported; however, the sequence of its mitochondrial genome is still lacking. Since the origin of the endosymbiotic event, mitochondria have diverged during the evolution of the eukaryotic lineage. Unlike other eukaryotes, the plant mitogenome exhibits a striking diversity of differences in many features, especially the discovery of its multichromosomal structure, making it one of the genomes of greatest interest to molecular biologists. The absence of resources for mitogenomics has limited the study of the evolution of multichromosomal mitochondrial genomes. We sequenced and assembled annotated the mitogenome of<em> Lilium tsingtauense </em>based on BGI short reads and Nanopore long reads, characterized the first complete mitogenome of <em>Lilium</em>, and analyzed it in comparison with those of other angiosperms.
DOI: 10.6084/m9.figshare.28694729.v2
title: Dataset_Self-concept_self-esteem

description: Over the last two decades, the number of people who practice activities in the natural environment has increased and the demand for teachers for these activities has grown. It is necessary to analyze the impact of different psychosocial and emotional factors such as self-concept, self-esteem, satisfaction with life and well-being, in teachers of special regime sports education, as regulated training in the spanish educational system. The purpose of this study is to analyze the relationship between physical, emotional and social self-concept and self-esteem; and to study the influence of self-esteem between self-concept and life satisfaction in teachers. The participants of the study were 788 teachers of special regime sports education, from the regulated training educational system of Spain. The instruments used were the Self-Concept-Scale-AF5, the Rosenberg Self-Esteem Questionnaire and the Satisfaction with Life Scale. To present the results of the study, a structural equation model PLS-SEM was developed based on the theoretical framework analyzed, with an explanatory-predictive approach. The evidence showed the coefficients of determination Self-esteem (<i>R</i><sup>2</sup>=0.395; <i>Q</i>²=0.268) and Life Satisfaction (<i>R</i><sup>2</sup>=0.334; <i>Q</i>²=0.237), being the appropriate adjustment. The acquisition of an adequate self-concept and correct self-esteem allows practitioners of sports disciplines in the natural environment to have greater life satisfaction.
DOI: 10.17632/237462r82r
title: Economic complexity, shadow economy, and income inequality: fresh evidence from panel data

description: Panel dataset for examining the relationship between economic complexity, shadow economy, and income inequality
DOI: 10.17632/byww6nrp2z
title: FTIR Spectroscopy (2500-4000 nm) dataset for adulteration coconut milk

description: This dataset results from measurements using FTIR Spectroscopy at a wavelength of 2500-4000 nm on a coconut milk sample. Infrared spectral data of coconut milk ware acquired using a compact FTIR instrument (Bruker alpha II). FTIR Spectra data and adulteration coconut milk were collected at the Research Center for Appropriate Technology, Indonesian Institute of Sciences (LIPI), Subang, Indonesia
DOI: 10.17632/wr8hpryyk9
title: Anthropogenic particle concentrations and fluxes in an urban river are temporally variable and impacted by storm events

description: This dataset reports anthropogenic particle (AP) concentrations and fluxes in an urban river during storms. We used automated, high-resolution sampling to collect water samples before, during, and after four storm events in the Milwaukee River. AP concentrations and fluxes varied significantly across the four storm events, highlighting the temporal variability of AP dynamics. When data from the sampling periods were pooled, there were increases in particle concentration and flux during the early phases of the storms, suggesting that floods may flush AP into the river and/or resuspend particles from the benthic zone. AP flux was closely linked to river discharge, suggesting large loads of AP are delivered downstream during storms. Unexpectedly, AP concentrations were not correlated with other simultaneously measured water quality metrics, including total suspended solids, fecal coliforms, chloride, nitrate, and sulfate, indicating that these metrics cannot be used to estimate AP. These data will contribute to more accurate models of particle dynamics in rivers and global plastic export to oceans.
DOI: 10.6084/m9.figshare.12250970.v1
title: Supplementary Material for: Fallseminare in der klinischen Psychologie und Psychotherapie

description: Wir stellen das Konzept für Fallseminare vor, wie sie seit 2009 an der Universität Marburg und seit 2018 an der Universität Koblenz-Landau erfolgreich durchgeführt werden. Die Seminare folgen dem Prinzip der problemorientierten Lernumgebung. Etwa 12 Studierende behandeln dabei gemeinsam eine PatientIn unter der Anleitung einer psychologischen PsychotherapeutIn. Neuste wissenschaftliche Erkenntnisse werden dabei stets einbezogen. Die Studierenden lernen außerdem Fallberichte zu verfassen, die eine Grundlage für die Benotung des Seminars darstellen. Die im Fallseminar gelehrten diagnostischen und therapeutischen Kompetenzen werden mit den in der Approbationsordnung gemäß Psychotherapeutengesetz (PsychTh-ApprO) geforderten zukünftig zu lehrenden Kompetenzen abgeglichen.
DOI: 10.6084/m9.figshare.26367550.v1
title: Flow cytometry of sunitinib-tolerance 786-O cell

description: Cells (2×10<sup>5</sup>) were cultured in 6-well plates, and then were incubated with sunitinib for 24 hr. Necrosis was analyzed using the Annexin V-FITC/PI Apoptosis Detection Kit (40302ES50, Yeasen Biotechnology, Shanghai, China), following the manufacturer’s instruction. The harvested cells were washed twice with PBS, and were re-suspended in 100 μL 1×binding buffer. Subsequently, the mixture was incubated with 5 μL Annexin V-FITC and 10 μL PI Staining Solution at room temperature for 10-15 min in the dark. Finally, the apoptosis was analyzed by flow cytometry (Bechman, CytoFLEX, USA).