cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.rfj6q57d8
title: Data from: Wind turbines in managed forests partially displace common birds

description: Wind turbines are increasingly being installed in forests, which can lead
 to land use disputes between climate mitigation efforts and nature
 conservation. Environmental impact assessments precede the construction of
 wind turbines to ensure that wind turbines are installed only in managed
 or degraded forests that are of potentially low value for conservation. It
 is unknown, nevertheless, if animals deemed of minor relevance in
 environmental impact assessments are affected by wind turbines in managed
 forests. We investigated the impact of wind turbines on common forest
 birds, by counting birds along an impact-gradient of wind turbines in 24
 temperate forests in Hesse, Germany. During 860 point counts, we counted
 2,231 birds from 45 species. Bird communities were strongly related to
 forest structure, season and the rotor diameter of wind turbines, but were
 not related to wind turbine distance. For instance, bird abundance
 decreased in structure-poor (-38%) and monocultural (-41%) forests with
 wind turbines, and in young (-36%) deciduous forests with larger and more
 wind turbines (-24%). Overall, our findings suggest that wind turbines in
 managed forests partially displace common forest birds. If these birds are
 displaced to harsh environments, wind turbines might indirectly contribute
 to a decline of their populations. Yet, forest bird communities are
 locally more sensitive to forest quality than to wind turbine presence. To
 prevent further displacement of forest animals, forests of lowest quality
 for wildlife should be preferred in spatial planning for wind turbines,
 for instance small and structure-poor monocultures along highways.
description: See material and method section in the underlying study.
DOI: 10.22008/promice/data/ice_discharge/d/v02/0ewuhp
title: sector_err.csv

description: Sector error. Git hash: 0362770
DOI: 10.22008/promice/data/ice_discharge/d/v02/hkilzb
title: sector.nc

description: Sector discharge, coverage, and error. Git hash: 0362770
DOI: 10.22008/promice/data/ice_discharge/d/v02/02q37d
title: gate_coverage.csv

description: Gate coverage. Git hash: a5e30e4
DOI: 10.22008/promice/data/ice_discharge/d/v02/ei1kgz
title: gate_D.csv

description: Gate discharge. Git hash: a5e30e4
DOI: 10.22008/promice/data/ice_discharge/d/v02/jolcn9
title: gate_err.csv

description: Gate errors. Git hash: a5e30e4
DOI: 10.5061/dryad.9cnp5hqmp
title: Short-term effects of continuous cover forestry on forest biomass production and biodiversity: Applying single-tree selection in forests dominated by Picea abies

description: AbstractThe rotation forestry system provides high biomass production, but
 could also have a negative impact on species sensitive to disturbance.
 Continuous cover forestry (CCF) could contribute to solving these
 conflicting goals, but its feasibility in nutrient limited boreal forests
 is yet unresolved. In a unique experiment, we simultaneously assessed the
 short-term effect of single-tree selection on both biomass production and
 biodiversity (vascular plants, bryophytes, wood-inhabiting fungi), and
 tested fertilization as a way to mediate growth-biodiversity trade-offs.
 We found that unharvested stands and stands subjected to single-tree
 selection had a similar species assemblage of vascular plants, bryophytes,
 and wood-inhabiting fungi. Fertilization increased growth by 37% and
 induced shifts in two understory species (favoring the grass Avenella
 flexuosa and disfavoring the bryophyte Hylocomium splendens). We conclude
 that single-tree selection may become a useful tool to enhance
 biodiversity in managed forests.
DOI: 10.22008/promice/data/ice_discharge/d/v02/5voeex
title: GIS_coverage.csv

description: Greenland coverage. Git hash: a5e30e4
DOI: 10.22008/promice/data/ice_discharge/d/v02/rg7reu
title: gate.nc

description: Gate discharge, coverage, error, and metadata. Git hash: a5e30e4
DOI: 10.22008/promice/data/ice_discharge/d/v02/psb5fs
title: GIS_D.csv

description: Greenland discharge. Git hash: a5e30e4
DOI: 10.22008/promice/data/ice_discharge/d/v02/qqikt6
title: GIS_err.csv

description: Greenland error. Git hash: a5e30e4
DOI: 10.22008/promice/data/ice_discharge/d/v02/r2csrj
title: GIS.nc

description: Greenland discharge, coverage, and error. Git hash: a5e30e4
DOI: 10.5061/dryad.6q573n61h
title: Subarctic afforestation: effects of forest plantations on ground-nesting birds in lowland Iceland

description: Planting forests is a commonly suggested measure to mitigate climate
 change. The resulting changes in habitat structure can greatly influence
 the diversity and abundance of pre-existing wildlife. Understanding these
 consequences is key for avoiding unintended impacts of afforestation on
 habitats and populations of conservation concern. Afforestation in lowland
 Iceland has been gaining momentum in recent years and further increases
 are planned. Iceland supports internationally important breeding
 populations of several ground-nesting, migratory bird species that mostly
 breed in open habitats. If afforestation impacts the distribution and
 abundance of these species, the consequences may be apparent throughout
 their non-breeding ranges across Europe and Africa. To quantify the
 effects of plantation forests on the abundance and distribution of
 ground-nesting birds (in particular waders, Charadriiformes), surveys were
 conducted on 161 transects (surrounding 118 plantations) perpendicular to
 forest edges throughout Iceland. The resulting variation in density with
 distance from plantation was used to estimate the likely changes in bird
 numbers resulting from future afforestation plans, and to explore the
 potential effects of different planting configuration (size and number of
 forest patches) scenarios. Of seven wader species, densities of five
 (golden plover (Pluvialis apricaria), whimbrel (Numenius phaeopus),
 oystercatcher (Haematopus ostralegus), dunlin (Calidris alpina) and
 black-tailed godwit (Limosa limosa)) in the 200 m surrounding plantations
 were just over half of those further away (up to 700 m). Redshank (Tringa
 totanus) densities were lowest &lt;150 m from the plantation edge
 while snipe (Gallinago gallinago) densities were 50% higher close to
 plantations (0-50 m) than further away (51-700 m), and no consistent
 effects of plantation height, diameter, density or type were identified.
 Plantations are typically small and widespread, and simulated scenarios
 indicated that total declines in bird abundance resulting from planting
 trees in one large block (1000 ha) could result in only ~11% of the
 declines predicted from planting multiple small blocks (1 ha) in similar
 habitats. Synthesis and application: The severe impact that planting
 forests in open landscapes can have on populations of ground-nesting birds
 emphasises the need for strategic planning of tree-planting schemes. Given
 Iceland’s statutory commitments to species protection and the huge
 contribution of Iceland to global migratory bird flyways, these are
 challenges that must be addressed quickly, before population-level impacts
 are observed across migratory ranges.
DOI: 10.22008/promice/data/ice_discharge/d/v02/uiwc2b
title: README.txt

description: README. Git hash: a5e30e4
DOI: 10.22008/promice/data/ice_discharge/d/v02/kqlxla
title: region_coverage.csv

description: Regional coverage. Git hash: a5e30e4
DOI: 10.22008/promice/data/ice_discharge/d/v02/r88i7q
title: region_D.csv

description: Regional discharge. Git hash: a5e30e4
DOI: 10.22008/promice/data/ice_discharge/d/v02/ffpyqr
title: region.nc

description: Regional discharge, coverage, and error. Git hash: a5e30e4
DOI: 10.22008/promice/data/ice_discharge/d/v02/k0mjle
title: region_err.csv

description: Regional error. Git hash: a5e30e4
DOI: 10.5061/dryad.5mkkwh787
title: First large-scale quantification study of DNA preservation in insects from natural history collections using genome-wide sequencing

description: Insect declines are a global issue with significant ecological and
 economic ramifications. Yet we have a poor understanding of the genomic
 impact these losses can have. Genome-wide data from historical specimens
 has the potential to provide baselines of population genetic measures to
 study population change, with natural history collections representing
 large repositories of such specimens. However, an initial challenge in
 conducting historical DNA data analyses, is to understand how molecular
 preservation varies between specimens. Here, we highlight how Next
 Generation Sequencing methods developed for studying archaeological
 samples can be applied to determine DNA preservation from only a single
 leg taken from entomological museum specimens, some of which are more than
 a century old. An analysis of genome-wide data from a set of 113
 red-tailed bumblebee (Bombus lapidarius) specimens, from five British
 museum collections, was used to quantify DNA preservation over time.
 Additionally, to improve our analysis and further enable future research
 we generated a novel assembly of the red-tailed bumblebee genome. Our
 approach shows that museum entomological specimens are comprised of short
 DNA fragments with mean lengths below 100 base pairs (BP), suggesting a
 rapid and large-scale post-mortem reduction in DNA fragment size. After
 this initial decline, however, we find a relatively consistent rate of DNA
 decay in our dataset, and estimate a mean reduction in fragment length of
 1.9bp per decade. The proportion of quality filtered reads mapping our
 assembled reference genome was around 50 %, and decreased by 1.1 % per
 decade. We demonstrate that historical insects have significant potential
 to act as sources of DNA to create valuable genetic baselines. The
 relatively consistent rate of DNA degradation, both across collections and
 through time, mean that population level analyses - for example for
 conservation or evolutionary studies - are entirely feasible, as long as
 the degraded nature of DNA is accounted for. 
description: This study used an individual leg per specimen for 113 pinned B.
 lapidarius drones collected from 1891 to 2004. All samples were treated as
 degraded DNA and processed through an aDNA pipeline. Data sequenced on a
 NextSeq 500 and data aligned and prcoessed through bwa, samtools and
 picard. Linear Regression models in R.
DOI: 10.22008/promice/data/ice_discharge/d/v02/pntvsq
title: sector_coverage.csv

description: Sector coverage. Git hash: a5e30e4
DOI: 10.22008/promice/data/ice_discharge/d/v02/7bee3v
title: sector_D.csv

description: Sector discharge. Git hash: a5e30e4
DOI: 10.22008/promice/data/ice_discharge/d/v02/ywwl1b
title: sector_err.csv

description: Sector error. Git hash: a5e30e4
DOI: 10.22008/promice/data/ice_discharge/d/v02/btjwp4
title: sector.nc

description: Sector discharge, coverage, and error. Git hash: a5e30e4
DOI: 10.5061/dryad.dv41ns21k
title: Historical context modifies plant diversity–community productivity relationships in alpine grassland

description: While most studies yield positive relationships between biodiversity (B)
 and ecosystem functioning (EF), awareness is growing that BEF
 relationships can vary with ecological context. The awareness has led to
 increased efforts to understand how contemporary environmental context
 modifies BEF relationships, but the role of historical context, and the
 mechanisms by which it may influence biodiversity effects, remains poorly
 understood. We examined how historical context alters plant
 diversity‒community productivity relationships via plant species
 interactions in alpine grassland. We also tested how historical context
 modifies interactions between plants and arbuscular mycorrhizal (AM)
 fungi, which can potentially mediate the above processes. We studied
 biodiversity effects on plant community productivity at two grassland
 sites with different histories related to grazing intensity — heavy versus
 light livestock grazing — but similar current management. We assembled
 experimental communities of identical species composition with plants from
 each of the two sites in disturbed soil from a contemporary heavily grazed
 grassland, ranging in species richness from one to two, three and six
 species. Moreover, we carried out a mycorrhizal hyphae-exclusion
 experiment to test how plant interactions with AM fungi influence plant
 responses to historical context. We detected a significantly positive
 diversity‒productivity relationship that was driven by complementarity
 effects in communities composed of plants from the site without
 heavy-grazing history, but no such relationship in plant communities
 composed of plants from the site with heavy-grazing history. Plants from
 the site with heavy-grazing history had increased competitive ability and
 increased yields in low-diversity communities but disrupted
 complementarity effects in high-diversity communities. Moreover, plants of
 one species from the site with heavy-grazing history benefitted more from
 AM fungal communities than did plants from the site without such history.
 Synthesis: Using the same experimental design and species, communities
 assembled by plants from two sites with different historical contexts
 showed different plant diversity‒community productivity relationships. Our
 results suggest that historical context can alter plant
 diversity‒community productivity relationships via plant species
 interactions and potentially plant‒soil interactions. Therefore,
 considering historical contexts of ecological communities is of importance
 for advancing our understanding of long-term impacts of anthropogenic
 disturbance on ecosystem functioning.
DOI: 10.22008/promice/data/ice_discharge/d/v02/7uqjwt
title: gate_D.csv

description: Gate discharge. Git hash: a78c342
DOI: 10.22008/promice/data/ice_discharge/d/v02/celild
title: gate_coverage.csv

description: Gate coverage. Git hash: a78c342
DOI: 10.22008/promice/data/ice_discharge/d/v02/lvoynv
title: gate_meta.csv

description: Gate metadata. Git hash: a78c342
DOI: 10.22008/promice/data/ice_discharge/d/v02/uxiauo
title: gate_err.csv

description: Gate errors. Git hash: a78c342
DOI: 10.22008/promice/data/ice_discharge/d/v02/txxxrk
title: gate.nc

description: Gate discharge, coverage, error, and metadata. Git hash: a78c342
DOI: 10.22008/promice/data/ice_discharge/d/v02/vep8ul
title: GIS_coverage.csv

description: Greenland coverage. Git hash: a78c342
DOI: 10.22008/promice/data/ice_discharge/d/v02/ydxs8l
title: GIS_D.csv

description: Greenland discharge. Git hash: a78c342
DOI: 10.22008/promice/data/ice_discharge/d/v02/q6aeys
title: GIS_err.csv

description: Greenland error. Git hash: a78c342
DOI: 10.22008/promice/data/ice_discharge/d/v02/7dpuqr
title: GIS.nc

description: Greenland discharge, coverage, and error. Git hash: a78c342
DOI: 10.22008/promice/data/ice_discharge/d/v02/kd8hhb
title: README.txt

description: README. Git hash: a78c342
DOI: 10.22008/promice/data/ice_discharge/d/v02/xvg3fr
title: region_coverage.csv

description: Regional coverage. Git hash: a78c342
DOI: 10.22008/promice/data/ice_discharge/d/v02/gggxw4
title: region_err.csv

description: Regional error. Git hash: a78c342
DOI: 10.22008/promice/data/ice_discharge/d/v02/h2ilue
title: region_D.csv

description: Regional discharge. Git hash: a78c342
DOI: 10.22008/promice/data/ice_discharge/d/v02/kngbha
title: region.nc

description: Regional discharge, coverage, and error. Git hash: a78c342
DOI: 10.22008/promice/data/ice_discharge/d/v02/pci9lq
title: sector_coverage.csv

description: Sector coverage. Git hash: a78c342
DOI: 10.22008/promice/data/ice_discharge/d/v02/bubdrs
title: sector_D.csv

description: Sector discharge. Git hash: a78c342
DOI: 10.22008/promice/data/ice_discharge/d/v02/s7s5t6
title: sector_err.csv

description: Sector error. Git hash: a78c342
DOI: 10.22008/promice/data/ice_discharge/d/v02/corjac
title: sector.nc

description: Sector discharge, coverage, and error. Git hash: a78c342
DOI: 10.5061/dryad.dbrv15f3w
title: The evolutionary history and mechanistic basis of female ornamentation in a tropical songbird

description: Ornamentation, such as the showy plumage of birds, is widespread among
 female vertebrates, yet the evolutionary pressures shaping female
 ornamentation remain uncertain. In part this is due to a poor
 understanding of the mechanistic route to ornamentation in females. To
 address this issue, we evaluated the evolutionary history of ornament
 expression in a tropical passerine bird, the White-shouldered Fairywren,
 whose females, but not males, strongly vary between populations in
 occurrence of ornamented black-and-white plumage. We first use
 phylogenomic analysis to demonstrate that female ornamentation is derived
 and that female ornamentation evolves independently of changes in male
 plumage. We then use exogenous testosterone in a field experiment to
 induce partial ornamentation in naturally unornamented females. By
 sequencing the transcriptome of experimentally induced ornamented and
 natural feathers, we identify genes expressed during ornament production
 and evaluate the degree to which female ornamentation in this system is
 associated with elevated testosterone, as is common in males. We reveal
 that some ornamentation in females is linked to testosterone and that
 sexes differ in ornament-linked gene expression. Lastly, using
 genomic-outlier analysis we identify a candidate melanogenesis gene that
 lies in a region of high genomic divergence among populations that is also
 differentially expressed in feather follicles of different female
 plumages. Taken together, these findings are consistent with sex-specific
 selection favoring the evolution of female ornaments and demonstrate a key
 role for testosterone in generating population divergence in female
 ornamentation through gene regulation. More broadly, our work highlights
 similarities and differences in how ornamentation evolves in the sexes.
description: Supplemental tables, code, and gene expression data associated
 with the published manuscript. Please see the main manuscript for a
 detailed description of methods.
DOI: 10.22008/promice/data/ice_discharge/d/v02/tcdc10
title: gate_coverage.csv

description: Gate coverage. Git hash: 7356b27
DOI: 10.22008/promice/data/ice_discharge/d/v02/xzpiur
title: gate_D.csv

description: Gate discharge. Git hash: 7356b27
DOI: 10.22008/promice/data/ice_discharge/d/v02/7kynbb
title: gate_err.csv

description: Gate errors. Git hash: 7356b27
DOI: 10.22008/promice/data/ice_discharge/d/v02/sqrjao
title: gate.nc

description: Gate discharge, coverage, error, and metadata. Git hash: 7356b27
DOI: 10.22008/promice/data/ice_discharge/d/v02/i46ldt
title: GIS_coverage.csv

description: Greenland coverage. Git hash: 7356b27
DOI: 10.5061/dryad.h44j0zpnx
title: Model output of: Excitation of an MJO event in response to a transient sea surface warming in Super-Parameterized CAM

description: Recent studies have suggested that the Madden-Julian Oscillation (MJO)
 could be generated in the atmospheric adjustment to equatorial heating
 anomalies in models properly resolving moist convection. Here we use
 Super-Parameterized CAM to simulate atmospheric response to transient sea
 surface warming in the equatorial Indian Ocean, which leads to the
 excitation of an MJO event, robust across different ensemble members, in
 addition to the much-expected equatorial Rossby and Kelvin waves. A moist
 static energy (MSE) budget analysis suggests that longwave and surface
 turbulent latent heat flux anomalies are predominantly responsible for the
 MJO excitation; however, these terms oppose its eastward propagation. In
 contrast, advection of MSE generally weakens the MJO amplitude, but
 contributes to its eastward propagation. These results highlight the role
 of the MJO in the moist atmospheric adjustment to equatorial heating, with
 implications for the MJO mechanisms and prediction.
description: The dataset was generated by Super-Parameterized CAM
 (SPCAM).
DOI: 10.22008/promice/data/ice_discharge/d/v02/mctbqa
title: GIS_err.csv

description: Greenland error. Git hash: 7356b27
DOI: 10.22008/promice/data/ice_discharge/d/v02/yessfc
title: GIS_D.csv

description: Greenland discharge. Git hash: 7356b27
DOI: 10.22008/promice/data/ice_discharge/d/v02/jleste
title: README.txt

description: README. Git hash: 7356b27
DOI: 10.22008/promice/data/ice_discharge/d/v02/qed9nb
title: GIS.nc

description: Greenland discharge, coverage, and error. Git hash: 7356b27
DOI: 10.5061/dryad.66t1g1k4j
title: Post-ACL reconstruction surgery rehabilitation dataset using isokinetic dynamometer and wearable IMUs

description: Rehabilitation post-ACL reconstruction surgery is a lengthy process that
 involves a variety of exercises, with the goal of achieving leg symmetry.
 Testing for leg symmetry generally involves a series of tests, which may
 include walking gait analysis, isokinetic dynamometry, and single leg hop,
 if able. Isokinetic dynamometry readings have proven useful in
 understanding leg symmetry by providing a reading of muscle torque during
 a specific motion. However, the use of surface electromyography (sEMG) may
 provide further insight into the rehabilitation state of a patient's
 leg when placed on the mid thigh, by measuring the electrical muscle
 activity during an exercise. In a cohort of 22 participants (10 healthy,
 12 patients), we collected sEMG data during isokinetic dynamometry leg
 extensions at 90 and 180 degrees. One sEMG sensor was placed on each
 vastus lateralis, in line with the muscle fiber orientation at the distal
 1/3 of the measured distance from the greater trochanter to the
 superior-lateral pole of the patella. In combination, measuring muscle
 activity and muscle strength can aid in characterizing leg symmetry,
 leading to more accurate return-to-sport timelines.
DOI: 10.22008/promice/data/ice_discharge/d/v02/6h9i1k
title: region_coverage.csv

description: Regional coverage. Git hash: 7356b27
DOI: 10.22008/promice/data/ice_discharge/d/v02/f1s26p
title: region_err.csv

description: Regional error. Git hash: 7356b27
DOI: 10.22008/promice/data/ice_discharge/d/v02/oumpzx
title: region_D.csv

description: Regional discharge. Git hash: 7356b27
DOI: 10.22008/promice/data/ice_discharge/d/v02/fyteij
title: region.nc

description: Regional discharge, coverage, and error. Git hash: 7356b27
DOI: 10.22008/promice/data/ice_discharge/d/v02/kdxneh
title: sector_coverage.csv

description: Sector coverage. Git hash: 7356b27
DOI: 10.6078/d1bb16
title: The statistics of gaze during VR gaming

description: We present a dataset of eye-movement recordings obtained in virtual
 reality during videogame play. 10 observers played 4 different videogames
 which were modeled after popular virtual reality games. These games
 included a first-person shooter game, a rhythm game, an action rhythm game
 and an environmental simulation game. The games were presented using the
 HTC Vive Pro Eye virtual reality head-mounted display (HMD) which has an
 eye tracker built-in. The dataset includes eye position (in pixel
 coordinates) and depth buffer data collected during videogame play. This
 allows eye position to be mapped to depth buffers of the videogame
 environment. This data has been used to compute the statistics of
 binocular disparity, gaze direction, gaze distance, and the vergence
 accommodation conflict. This dataset represents the first attempt to track
 gaze during complex videogame play in virtual reality head-mounted
 displays. This work is published: Aizenman, A.M., Koulieris,
 G.A., Gibaldi, A., Sehgal, V., Levi, D.M., Banks, M.S. (2022). The
 statistics of eye movements and binocular disparities during VR gaming:
 Implications for headset design. Transactions on Graphics.
description: The files included are .txt and .png files which can be opened
 using any text editing and image processing software.
DOI: 10.22008/promice/data/ice_discharge/d/v02/q0nud4
title: sector_D.csv

description: Sector discharge. Git hash: 7356b27
DOI: 10.22008/promice/data/ice_discharge/d/v02/fqa2xo
title: sector_err.csv

description: Sector error. Git hash: 7356b27