cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ahnfbq
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plecotus gaisleri Benda, Kiefer, Hanak & Veith, 2004",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006919-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uyhys7
title: Occurrence Download

description: A dataset containing 22254 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HostingOrganizationKey is 96710dc8-fecb-440d-ae3e-c34ae8a9616f",
 "PublishingCountry is Guatemala",
 "PublishingOrg is one of (bae69d55-51ab-4e97-a219-596ede861a55, 1eb0746b-24c4-40b7-9ed7-3381428e9648)"
 ]
}

 The dataset includes 22254 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006918-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.phjguy
title: Occurrence Download

description: A dataset containing 20557 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Continent is Oceania",
 "Country is Australia",
 "DatasetKey is iNaturalist Research-grade Observations",
 "OccurrenceStatus is Present",
 "TaxonKey is Phascolarctos cinereus (Goldfuss, 1817)"
 ]
}

 The dataset includes 20557 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006920-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14779315
title: Gene/Protein BridgeDb ID Mapping Database (Ensembl Fungi 56)

description: Mapping databases derived from Ensembl Fungi 56. These files can be used with BridgeDb.

The scripts that were used to create these databases based on Ensembl BioMart can be found at https://github.com/bridgedb/create-bridgedb-genedb.
DOI: 10.5281/zenodo.14779316
title: Gene/Protein BridgeDb ID Mapping Database (Ensembl Fungi 56)

description: Mapping databases derived from Ensembl Fungi 56. These files can be used with BridgeDb.

The scripts that were used to create these databases based on Ensembl BioMart can be found at https://github.com/bridgedb/create-bridgedb-genedb.
DOI: 10.5281/zenodo.14779362
title: Gene/Protein BridgeDb ID Mapping Database (Ensembl Metazoa 56)

description: Mapping databases derived from Ensembl Metazoa 56. These files can be used with BridgeDb.The scripts that were used to create these databases based on Ensembl BioMart can be found at https://github.com/bridgedb/create-bridgedb-genedb.
DOI: 10.5281/zenodo.14779363
title: Gene/Protein BridgeDb ID Mapping Database (Ensembl Metazoa 56)

description: Mapping databases derived from Ensembl Metazoa 56. These files can be used with BridgeDb.The scripts that were used to create these databases based on Ensembl BioMart can be found at https://github.com/bridgedb/create-bridgedb-genedb.
DOI: 10.5281/zenodo.14779267
title: Gene/Protein BridgeDb ID Mapping Database (Ensembl Plants 56)

description: Mapping databases derived from Ensembl Plants 56. These files can be used with BridgeDb.

The scripts that were used to create these databases based on Ensembl BioMart can be found at https://github.com/bridgedb/create-bridgedb-genedb.
DOI: 10.5281/zenodo.14779268
title: Gene/Protein BridgeDb ID Mapping Database (Ensembl Plants 56)

description: Mapping databases derived from Ensembl Plants 56. These files can be used with BridgeDb.

The scripts that were used to create these databases based on Ensembl BioMart can be found at https://github.com/bridgedb/create-bridgedb-genedb.
DOI: 10.5281/zenodo.14782249
title: Fiora: Source Data for Training and Testing

description: This repository contains source data for training and testing the Fiora model (see GitHub and DOI: 10.5281/zenodo.14651774). As part of the Fiora study (Nowatzky et al., 2025), which introduces a GNN-based fragmentation algorithm for simulating MS/MS spectra, this dataset enables the reproduction of the study’s findings and the training of new spectral prediction models.
DOI: 10.5281/zenodo.14782250
title: Fiora: Source Data for Training and Testing

description: This repository contains source data for training and testing the Fiora model (see GitHub and DOI: 10.5281/zenodo.14651774). As part of the Fiora study (Nowatzky et al., 2025), which introduces a GNN-based fragmentation algorithm for simulating MS/MS spectra, this dataset enables the reproduction of the study’s findings and the training of new spectral prediction models.
DOI: 10.5281/zenodo.10526311
title: E3PhysicsBasedGroundMotions

description: This material is based upon work supported by the U.S. National Science Foundation under Grants No. 1612843 and No. 2131111. Any opinions, findings, conclusions, or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the U.S. National Science Foundation.
DOI: 10.5281/zenodo.10526312
title: E3PhysicsBasedGroundMotions
DOI: 10.5281/zenodo.10993612
title: E3PhysicsBasedGroundMotions
DOI: 10.5281/zenodo.11089175
title: E3PhysicsBasedGroundMotions
DOI: 10.5281/zenodo.14782359
title: E3PhysicsBasedGroundMotions

description: This material is based upon work supported by the U.S. National Science Foundation under Grants No. 1612843 and No. 2131111. Any opinions, findings, conclusions, or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the U.S. National Science Foundation.
DOI: 10.5281/zenodo.11089208
title: E4OpenSeesPyFEM
DOI: 10.5281/zenodo.10526317
title: E4OpenSeesPyFEM

description: This material is based upon work supported by the U.S. National Science Foundation under Grants No. 1612843 and No. 2131111. Any opinions, findings, conclusions, or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the U.S. National Science Foundation.
DOI: 10.5281/zenodo.10526318
title: E4OpenSeesPyFEM
DOI: 10.5281/zenodo.10993617
title: E4OpenSeesPyFEM
DOI: 10.5281/zenodo.14782367
title: E4OpenSeesPyFEM

description: This material is based upon work supported by the U.S. National Science Foundation under Grants No. 1612843 and No. 2131111. Any opinions, findings, conclusions, or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the U.S. National Science Foundation.
DOI: 10.5281/zenodo.14777884
title: Comparing continuous and perfusion cultivation of microalgae on recirculating aquaculture system effluent water

description: Dataset of experimental data belonging to publication "Comparing continuous and perfusion cultivation of microalgae on recirculating aquaculture system effluent water".
DOI: 10.5281/zenodo.14777885
title: Comparing continuous and perfusion cultivation of microalgae on recirculating aquaculture system effluent water

description: Dataset of experimental data belonging to publication "Comparing continuous and perfusion cultivation of microalgae on recirculating aquaculture system effluent water".
DOI: 10.5281/zenodo.14782332
title: Table 12. Codebook for Document Analysis

description: This codebook provides a structured framework to systematically analyze a diverse set of documents—ranging from government policies and NASs (National AI Strategies) to academic papers and media reports—on AI governance in the GCC.

By applying these codes, researchers can compare and contrast policy priorities, ethical standards, regulatory frameworks, and cultural considerations across GCC states. The codebook ensures replicability (so multiple coders can identify the same themes) and depth (so the analysis captures both high-level policy visions and detailed regulatory or ethical nuances).
DOI: 10.5281/zenodo.14782333
title: Table 12. Codebook for Document Analysis

description: This codebook provides a structured framework to systematically analyze a diverse set of documents—ranging from government policies and NASs (National AI Strategies) to academic papers and media reports—on AI governance in the GCC.

By applying these codes, researchers can compare and contrast policy priorities, ethical standards, regulatory frameworks, and cultural considerations across GCC states. The codebook ensures replicability (so multiple coders can identify the same themes) and depth (so the analysis captures both high-level policy visions and detailed regulatory or ethical nuances).
DOI: 10.15468/dl.wbv44s
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bison bonasus (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 62 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006922-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6092/unibo/amsacta/8147
title: Database of indicators for vertical farming in Africa

description: The database has been elaborated with the aim of assessing the potential for vertical farming technology integration within the African continent, targeting the countries where a more sustainable approach could be achieved. A deep analysis of each territory’s major opportunities and challenges was built through an updated database of 147 development indicators from 54 African states. From the analysis of the database – included in the linked publication - countries such as South Africa, Seychelles, Egypt, Mauritius, Morocco, Tunisia, Algeria, Cape Verde, and Nigeria showed the best prospective for indoor vertical farming implementation. Moreover, Seychelles, South Africa, and Egypt resulted to be the countries where vertical indoor farming could be more sustainable.
DOI: 10.15468/dl.wh8eyv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rupicapra rupicapra tatrica Blahout, 1971",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006923-250127130748423/datasets/export for details.
DOI: 10.15468/dl.gnv7bh
title: Occurrence Download

description: A dataset containing 477 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Branchiobdella parasita (Braun, 1805)"
 ]
}

 The dataset includes 477 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006924-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.whgagk
title: Occurrence Download

description: A dataset containing 443 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alytes cisternasii Boscá, 1879",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 443 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006925-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28324367.v1
title: Supplementary Material for: A challenging case of recurrent cholangitis caused by isolated bile duct metastasis of colorectal adenocarcinoma – rescue therapy through EUS-guided hepaticoesophagostomy.

description: A 64-year-old male was admitted with fever, abdominal pain and jaundice. Medical history was relevant for colorectal adenocarcinoma eleven years before and right hepatectomy due to liver metastasis. MRCP revealed left hepatic duct stenosis without liver nodules. ERCP was performed for biliary drainage with plastic stents. After inconclusive brush cytology, cholangioscopy (Spyglass™DS2) was performed showing villous mucosa surrounded by irregular vessels suggestive of tumor neovascularization. Spybite™ biopsies confirmed biliary metastasis of colorectal origin.
The patient started palliative chemotherapy being readmitted six months later with acute cholangitis. Diffuse infiltrating intrabiliary lesion with 120mm was detected in control MRCP. Given its intraductal extension and gastric compression by the hypertrophied liver leading to duodenoscope mispositioning, transpapilar stents could not be deployed. Multiorgan dysfunction developed despite broad-spectrum antibiotics and EUS-guided biliary drainage was proposed. Although EUS access was limited by gastric bulging, puncture of a dilated intrahepatic duct was accomplished with a 19G needle. PCSEMS (GIOBOR™8x100mm) placement was only possible above the gastroesophageal junction with the proximal flare being incidentally deployed in a 3cm intraparietal esophageal tract. The misplaced stent was immediately recanalized and a stent-in-stent FCSEMS (Wallflex™80x10mm) allowed the hepaticoesophagostomy creation. Since the stent opening was orally oriented in esophageal lumen, parenteral nutrition was started to avoid contamination. Sepsis recovering and liver tests normalization were observed. 
Before hospital discharge stent reposition was planned to resume oral feeding. After placement of a third stent-in-stent NCSEMS (Wallflex™120x10mm) in the hepaticoesophagostomy to prevent migration, the proximal flare was oriented to the stomach gently pushing with the endoscope aiding by an inflated biliary balloon. The patient resumed chemotherapy but died 8 months after due to disease progression. 
Isolated bile duct metastasis is an uncommon complication of colorectal cancer. EUS-guided hepaticoesophagostomy is feasible when puncture through the esophagus was inevitable, especially in patients with liver hypertrophy.
DOI: 10.15468/dl.hz64sq
title: Occurrence Download

description: A dataset containing 837 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is South America",
 "Country is one of (Brazil, Argentina, Colombia, Guyana, Bolivia (Plurinational State of), Peru, Venezuela (Bolivarian Republic of), Ecuador, Paraguay, French Guiana)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Utricularia foliosa L."
 ]
}

 The dataset includes 837 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006926-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vgjmuj
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nyctalus azoreum (Thomas, 1901)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 14 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006927-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zs72zn
title: Occurrence Download

description: A dataset containing 112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Museum of Comparative Zoology, Harvard University",
 "TaxonKey is one of (Lygophis Fitzinger, 1843, Liophis Wagler, 1830)"
 ]
}

 The dataset includes 112 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006928-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4yuwm2
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "InstitutionKey is 586ee56e-b0fe-4dff-b7f9-aeb104f3308a",
 {
 "and" : [
 "Geometry POLYGON((31.537531054871323 6.302067690603181,31.537531054871323 3.3734950119359866,36.56134500885727 3.3734950119359866,36.56134500885727 6.302067690603181,31.537531054871323 6.302067690603181))",
 "TaxonKey is one of (Artiodactyla, Perissodactyla)"
 ]
 }
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006929-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10526348
title: E10SiteResponse

description: This material is based upon work supported by the U.S. National Science Foundation under Grants No. 1612843 and No. 2131111. Any opinions, findings, conclusions, or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the U.S. National Science Foundation.
DOI: 10.5281/zenodo.10526349
title: E10SiteResponse
DOI: 10.5281/zenodo.10993646
title: E10SiteResponse
DOI: 10.5281/zenodo.11089411
title: E10SiteResponse
DOI: 10.5281/zenodo.14782416
title: E10SiteResponse

description: This material is based upon work supported by the U.S. National Science Foundation under Grants No. 1612843 and No. 2131111. Any opinions, findings, conclusions, or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the U.S. National Science Foundation.
DOI: 10.15468/dl.v4hn6p
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fallicambarus houstonensis Johnson, 2008"
 ]
}

 The dataset includes 54 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006930-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ffu48u
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Triturus vulgaris ampelensis Fuhn, 1951",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006931-250127130748423/datasets/export for details.
DOI: 10.15468/dl.7hw3jg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Microtus tatricus Kratochvíl, 1952",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006932-250127130748423/datasets/export for details.
DOI: 10.15468/dl.bpd4tx
title: Occurrence Download

description: A dataset containing 672055 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Danaus plexippus (Linnaeus, 1758)"
 ]
}

 The dataset includes 672055 records from 359 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006898-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jpvkd7
title: Occurrence Download

description: A dataset containing 892 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is South America",
 "Country is one of (Brazil, Argentina, Colombia, Guyana, Bolivia (Plurinational State of), Peru, Venezuela (Bolivarian Republic of), Ecuador, Paraguay, French Guiana)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Utricularia gibba L."
 ]
}

 The dataset includes 892 records from 106 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006933-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10608046
title: Supporting data for "Musical scales optimize pitch spacing: A global analysis of traditional vocal music"

description: Fundamental frequency (f0) of singers, and the GMM parameters (means, weights, variances) of the fitted scale models, for 411 vocal songs. This data is based on the same set of recordings used to produce another study, for which the data is hosted separately on OSF. The previous study used manual scale annotations, and a method for estimating "vocal imprecision". The manual scale annotations were used as the starting point for the semi-automated scale annotations provided here.

"scale_data.csv" contains the metadata for the scales, including the manual scale annotations and the semi-automated scale annotations (GMM means). For each scale, the scale degrees are reported together in single CSV cells, in JSON string format. Additional information is provided to help with mapping between this data and the previous version hosted on OSF. In cases where semi-automated analyses led to updated manual annotations, these new annotations are not recorded here (but one can infer the closest manual annotation given the semi-automated scale annotations).

"GMM_parameters.csv" contains the parameters used for filtering the f0 data, in order to get a clean GMM that best matches the perceived scale (perception here includes listening to the original recording, and visually examining the f0 melograph).

"README" contains descriptions of the columns in CSV files.

"SupplementaryData" contains the f0 data (F0), the GMM parameters (Scales), and visualizations of the f0 and fitted GMM (PitchTraceFigures). For help in understanding the figures in PitchTraceFigures, please check the caption for Figure 2 in the main text of the related paper, or Supplementary Figure 6 in the associated supplementary information file.