cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6953348.v1
title: Geochemistry and zircon U–Pb–Hf isotopes of the 780 Ma I-type granites in the western Yangtze Block: petrogenesis and crustal evolution

description: Neoproterozoic I-type granites could provide vital insights into the crust–mantle interaction and the crustal evolution along the western Yangtze Block, South China. This paper presents new zircon U–Pb ages, bulk-rock geochemistry, and <i>in situ</i> zircon Lu–Hf isotope on the Dalu I-type granites from the southwestern Yangtze Block. Zircon U–Pb dating show the crystallization ages of 781.1 ± 2.8 Ma for granodiorites and 779.8 ± 2.0 Ma for granites, respectively. The Dalu granodiorites are Na-rich, calc-alkaline, metaluminous to slightly peraluminous (A/CNK = 0.94–1.08). Zircons from granodiorite have positive <i>ε</i>Hf(<i>t</i>) values (+2.16 to +7.39) with crustal model ages of 1.21–1.54 Ga, indicating juvenile mafic lower crust source. The Dalu granites are high-K calc-alkaline, peraluminous rocks. They have variable zircon <i>ε</i>Hf(<i>t</i>) values (−4.65 to +5.80) with crustal model ages of 1.31–1.97 Ga, suggesting that they were derived from the mature metasediment-derived melts by the mixing of newly formed mafic lower crust-derived melts. The geochemical variations in Dalu pluton is dominated not only by the different source rocks but also by the different melting temperatures. Combining with the geochemistry and isotopic compositions of I-type granitoids and tectonic setting in the western Yangtze Block, we propose that the Dalu I-type granodiorites–granites associations are the magmatic response from different crustal levels, which were induced by the heat anomaly due to the asthenosphere upwelling in the subduction-related setting.
DOI: 10.6084/m9.figshare.20580962.v1
title: Additional file 17 of RNA sequencing reveals dynamic expression of lncRNAs and mRNAs in caprine endometrial epithelial cells induced by Neospora caninum infection

description: Additional file 17: Data S14. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis of all trans-target genes for the differentially expressed lncRNAs (DElncRNAs).
DOI: 10.6084/m9.figshare.12720275
title: Additional file 1 of Neuron-derived exosomes-transmitted miR-124-3p protect traumatically injured spinal cord by suppressing the activation of neurotoxic microglia and astrocytes

description: Additional file 1: Table S1. The primer sequences used in this work.
DOI: 10.18112/openneuro.ds004952.v1.0.2
title: Novel Reading
DOI: 10.6084/m9.figshare.20056655.v1
title: Additional file 5 of MicroRNA expression profile of chicken cecum in different stages during Histomonas meleagridis infection

description: Additional file 5: Table S5. Differentially expressed miRNAs induced by H. meleagridis at 10 DPI regulating the gene expression in Hedgehog signaling pathway
DOI: 10.6084/m9.figshare.20056658
title: Additional file 6 of MicroRNA expression profile of chicken cecum in different stages during Histomonas meleagridis infection

description: Additional file 6: Table S6. Differentially expressed miRNAs induced by H. meleagridis at 15 DPI regulating the gene expression in Endocytosis and Phagosome pathway
DOI: 10.15161/oar.it/143156
title: Carta Geologica d'Italia alla scala 1:50.000, F. 132-152-153 Bardonecchia

description: Foglio geologico alla scala 1:50.000 basato su rilevamenti alla scala 1:25.000 (eseguiti tra il 1995 e il 1998) comprensivo di legenda, schemi a cornice, sezioni geologiche.
DOI: 10.15161/oar.it/143155
title: Carta Geologica d'Italia alla scala 1:50.000, F. 132-152-153 Bardonecchia

description: Foglio geologico alla scala 1:50.000 basato su rilevamenti alla scala 1:25.000 (eseguiti tra il 1995 e il 1998) comprensivo di legenda, schemi a cornice, sezioni geologiche.
DOI: 10.6084/m9.figshare.20581014
title: Additional file 1 of A two-stage genome-wide association study to identify novel genetic loci associated with acute radiotherapy toxicity in nasopharyngeal carcinoma

description: Additional file 1: Fig. S1. Diagram of data processing flow. Bioinformatics tools utilized in each step were showed in blue in the brackets. Detailed parameters and quality control criteria were indicated with red. Fig. S2. Distribution of samples according to PCA analysis in discovery stage. The red and green spots represented two different groups of patients. The results showed that no stray samples appeared in all five toxicities. Fig. S3. Quantile–quantile (QQ) plot of observed association P values (y-axis) against expected P values (x-axis) in the discovery stage. Fig. S4. Establishment of prediction models for skin reaction (A and B) and dysphagia toxicities (C and D). For each toxicity, patients were firstly randomly divided into two groups, which used to establish (A and C) and test models (B and D) respectively. Then, three multivariable logistic regression models with genetic factors only, clinical factors only and combination of both genetic and clinical factors were established. The genetic model only involved genetic factors: rs6711678, rs4848597, rs4848598 and rs2091255 for skin reaction, and rs584547 for dysphagia. During the calculation, rs6711678, rs4848597, rs4848598 and rs2091255 were combined as polygenic risk scores. The clinical model involved clinical factors only, which include age, sex, BMI, smoking status, stage, EBV infection and radiotherapeutic regimen. The combined model integrated both genetic and clinical factors. BMI: body mass index, EBV: Epstein-Barr virus, AUC: area under curve. Fig. S5. The MAF of rs6711678, rs4848597, rs4848598, rs2091255 and rs584547 in different ethnic populations. AFR: African, EAS: East Asian, EUR: Europe, AMR: American, SAS: South Asian, LAM: Latin American. Table S1. Characteristics of NPC patients involved in skin reaction association analysis. Table S2. Characteristics of NPC patients involved in dysphagia association analysis. Table S3. Characteristics of NPC patients involved in oral mucositis association analysis. Table S4. Characteristics of NPC patients involved in salivary glands toxicity association analysis. Table S5. Characteristics of NPC patients involved in myelosuppression association analysis. Table S6. Stratified analysis of the association between skin reaction and chromosome 2q14.2 loci. Table S7. Association between therapeutic response and chromosome 2q14.2 loci in the stratified patients.
DOI: 10.6084/m9.figshare.14677127.v1
title: Additional file 8 of Characterization of structural variation in Tibetans reveals new evidence of high-altitude adaptation and introgression

description: Additional file 8: Table S13
DOI: 10.5281/zenodo.10649287
title: Gobiernos de coalición valencianos - El Botànic
DOI: 10.5281/zenodo.10649288
title: Gobiernos de coalición valencianos - El Botànic
DOI: 10.5281/zenodo.10649116
title: CORRECT NUTRITION IS DISEASE PREVENTION
DOI: 10.5281/zenodo.10649117
title: CORRECT NUTRITION IS DISEASE PREVENTION
DOI: 10.6084/m9.figshare.8002184.v1
title: Additional file 1: of Nonsynonymous, synonymous and nonsense mutations in human cancer-related genes undergo stronger purifying selections than expectation

description: Table S1. List of 719 human cancer-related genes. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.8002187
title: Additional file 2: of Nonsynonymous, synonymous and nonsense mutations in human cancer-related genes undergo stronger purifying selections than expectation

description: Table S2. Genes with at least one common SNP in CDS. (XLSX 220 kb)
DOI: 10.6084/m9.figshare.8002187.v1
title: Additional file 2: of Nonsynonymous, synonymous and nonsense mutations in human cancer-related genes undergo stronger purifying selections than expectation

description: Table S2. Genes with at least one common SNP in CDS. (XLSX 220 kb)
DOI: 10.6084/m9.figshare.12720275.v1
title: Additional file 1 of Neuron-derived exosomes-transmitted miR-124-3p protect traumatically injured spinal cord by suppressing the activation of neurotoxic microglia and astrocytes

description: Additional file 1: Table S1. The primer sequences used in this work.
DOI: 10.6084/m9.figshare.12720301
title: Additional file 6 of Microbiota from alginate oligosaccharide-dosed mice successfully mitigated small intestinal mucositis

description: Additional file 6: Table S1. Relative amounts of microbiota in small intestine samples after 2-weeks of AOS treatment.
DOI: 10.6084/m9.figshare.12720301.v1
title: Additional file 6 of Microbiota from alginate oligosaccharide-dosed mice successfully mitigated small intestinal mucositis

description: Additional file 6: Table S1. Relative amounts of microbiota in small intestine samples after 2-weeks of AOS treatment.
DOI: 10.6084/m9.figshare.14818049
title: Inversion of the sediment sound velocity in the Northern South China Sea

description: Acoustic models are effective methods for inverting the geo-acoustic properties of seafloor sediments. To investigate the main sediment types in the northern South China Sea, 221 sediment core samples containing three sediment types (clayey silt, silty clay, muddy sand) were collected, and the geo-acoustic properties of the sediments were measured and analyzed. The results show that the same sediment type, shows different acoustic properties for different sedimentary environments. To verify the applications of different acoustic models, three acoustic models (the BS, EDFM and VGS model) were used to invert the sound velocities. It was observed that when porosity is less than about 0.75, the predicted velocity values from the three models are close to the measured values. As the porosity increases, the variation trend of VGS model is more in line with the measured data, while the BS and EDFM model has a relatively large error with the measured data.It seems that the VGS model, which incorporates the properties of both fluids and elastic solids, has a relatively broader scope of application. while the BS and EDFM models are susceptible to the porosity and particle size of the sediment.
DOI: 10.6084/m9.figshare.20056784.v1
title: Additional file 3 of A model for genuineness detection in genetically and phenotypically similar maize variety seeds based on hyperspectral imaging and machine learning

description: Additional file 3: The training data of machine vision.
DOI: 10.6084/m9.figshare.23730842.v1
title: Additional file 6 of Integrated transcriptomic and metabolomic analysis reveals the effects of polyploidization on the lignin content and metabolic pathway in Eucalyptus

description: Additional file 6: Table S3. Correlation of lignin-related genes, metabolites and lignin content.
DOI: 10.6084/m9.figshare.23730839
title: Additional file 5 of Integrated transcriptomic and metabolomic analysis reveals the effects of polyploidization on the lignin content and metabolic pathway in Eucalyptus

description: Additional file 5: Table S2. Statistical analysis of each sample in the transcriptomic data.
DOI: 10.6084/m9.figshare.23730845
title: Additional file 7 of Integrated transcriptomic and metabolomic analysis reveals the effects of polyploidization on the lignin content and metabolic pathway in Eucalyptus

description: Additional file 7: Table S4. Degree of transcription factors in the co-expression network.
DOI: 10.6084/m9.figshare.23730842
title: Additional file 6 of Integrated transcriptomic and metabolomic analysis reveals the effects of polyploidization on the lignin content and metabolic pathway in Eucalyptus

description: Additional file 6: Table S3. Correlation of lignin-related genes, metabolites and lignin content.
DOI: 10.24403/jp.1323295
title: Buttler, K. P.: Orchideen : Die wildwachsenden Arten und Unterarten Europas, Vorderasiens und Nordafrikas. - München : Mosaik Verlag, 1986 / [rezensiert von] H. Manitz
DOI: 10.6084/m9.figshare.23730871
title: Additional file 2 of Causal effects of serum lipid biomarkers on early age-related macular degeneration using Mendelian randomization

description: Additional file 2: Tables S2 to S6.
DOI: 10.6084/m9.figshare.23730886
title: Additional file 2 of Identification and analysis of lipid metabolism-related genes in allergic rhinitis

description: Supplementary Materials 2: Table S2. List of 73 lipid metabolism-related differentially expressed genes (LMR DEGs)
DOI: 10.6084/m9.figshare.23730883.v1
title: Additional file 1 of Identification and analysis of lipid metabolism-related genes in allergic rhinitis

description: Supplementary Materials 1: Table S1. Primer sequences for real-time fluorescence quantitative polymerase chain reaction (RT-qPCR)
DOI: 10.6084/m9.figshare.23730892.v1
title: Additional file 4 of Identification and analysis of lipid metabolism-related genes in allergic rhinitis

description: Supplementary Materials 4: Table S4. Results of the 33 Kyoto Encyclopedia of Genes and Genomes (KEGG) enriched terms using GSEA
DOI: 10.6084/m9.figshare.8002301
title: Additional file 3: of Unprecedented bacterial community richness in soybean nodules vary with cultivar and water status

description: Dataset 1. Subset of the nifH database that was used to assign taxonomy and build the phylogenetic tree. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.14818049.v2
title: Inversion of the sediment sound velocity in the Northern South China Sea

description: Acoustic models are effective methods for inverting the geo-acoustic properties of seafloor sediments. To investigate the main sediment types in the northern South China Sea, 221 sediment core samples containing three sediment types (clayey silt, silty clay, muddy sand) were collected, and the geo-acoustic properties of the sediments were measured and analyzed. The results show that the same sediment type, shows different acoustic properties for different sedimentary environments. To verify the applications of different acoustic models, three acoustic models (the BS, EDFM and VGS model) were used to invert the sound velocities. It was observed that when porosity is less than about 0.75, the predicted velocity values from the three models are close to the measured values. As the porosity increases, the variation trend of VGS model is more in line with the measured data, while the BS and EDFM model has a relatively large error with the measured data.It seems that the VGS model, which incorporates the properties of both fluids and elastic solids, has a relatively broader scope of application. while the BS and EDFM models are susceptible to the porosity and particle size of the sediment.
DOI: 10.6084/m9.figshare.20581005.v1
title: Additional file 1 of Genome-wide identification and characterization of active ingredients related β-Glucosidases in Dendrobium catenatum

description: Additional file 1.
DOI: 10.6084/m9.figshare.6953768.v1
title: Additional file 2: of TSSC3 promotes autophagy via inactivating the Src-mediated PI3K/Akt/mTOR pathway to suppress tumorigenesis and metastasis in osteosarcoma, and predicts a favorable prognosis

description: Supplementary Tables. Table S1. shRNA target sequence used in the experiments. Table S2. Primers used for qRT-PCR in this study. Table S3. Correlation between TSSC3 expression and ATG5 or P62 expression in patients with osteosarcoma. Table S4. Univariate Cox proportional hazard regression analysis for overall survival in patients with osteosarcoma. Table S5. Correlations between ATG5 expression and the metastasis or recurrence of positive-TSSC3 expression osteosarcoma. (RTF 137 kb)
DOI: 10.6084/m9.figshare.14818100.v1
title: Circular RNA circHIPK3 promotes breast cancer progression via sponging MiR-326

description: <b>Background</b>: This study investigated the potential molecular mechanism of circular RNA HIPK3 (circHIPK3) in breast cancer (BCa). <b>Methods</b>: BCa cells were transfected with miR-326 mimic, miR-326 inhibitor, circHIPK3, sicircHIPK3. The expressions of circHIPK3 and miR-326 in BCa tissues and BCa cell lines were determined by RT-qPCR. Cell viability, colony formation, migration, invasion, and apoptosis of the cells were detected by CCK-8 and colony formation, wound-healing, transwell and flow cytometric assays, respectively. The relationship between circHIPK3 and miR-326 was analyzed and confirmed by circInteractome, dual-luciferase reporter, RT-qPCR, Pearson’s correlation assays. Western blot and RT-qPCR were performed to determine the expressions of apoptosis-related molecules (Bcl-2, Bax, and cleaved Caspase-3) and EMT-related molecules (E-cadherin, N-cadherin, and Vimentin) in the BCa cells and tumor tissues. The tumor growth in mice was examined in a xenograft tumor model in which Ki-67 expression was determined by immunohistochemistry (IHC). <b>Results</b>: In BCa, the expression of circHIPK3 was up-regulated and that of miR-326 was down-regulated. CircHIPK3 knockdown inhibited the cell proliferation, invasion, and migration. MiR-326 was the direct target of circHIPK3, and was inversely correlated with circHIPK3 expression. CircHIPK3 overexpression promoted proliferation, migration, invasion, apoptosis resistance, and tumor growth and up-regulated Ki-67 expression, at the same time, the expressions of Bcl-2, N-cadherin, Vimentin were up-regulated, and those of Bax, cleaved Caspase-3 and E-cadherin were inhibited. These above expressions were partially reversed by miR-326 overexpression. <b>Conclusion</b>: CircHIPK3 sponges miR-326 to promote BCa growth and metastasis. The current findings provide a novel therapeutic target for treating BCa.
DOI: 10.6084/m9.figshare.20581008
title: Additional file 2 of Genome-wide identification and characterization of active ingredients related β-Glucosidases in Dendrobium catenatum

description: Additional file 2: Fig. S1. Transient expression of DcBGLUs in leaves of D. catenatum. Fig. S2. Amino acid sequence alignment of 22 DcBGLU enzymes in D. catenatum. Fig. S3. Analysis of the numbers and types of cis-acting elements in DcBGLU genes. Table S1. Accession numbers for proteins used in the phylogenetic tree. Table S2. Primers used for qRT-PCR validation. Table S3. Primers used for gene cloning. Table S4. Abbreviations.
DOI: 10.6084/m9.figshare.8002301.v1
title: Additional file 3: of Unprecedented bacterial community richness in soybean nodules vary with cultivar and water status

description: Dataset 1. Subset of the nifH database that was used to assign taxonomy and build the phylogenetic tree. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.8002382
title: MOESM3 of Abnormal level of CUL4B-mediated histone H2A ubiquitination causes disruptive HOX gene expression

description: Additional file 3: Table S2. GO CUL4B PPI _interations.
DOI: 10.5281/zenodo.10649152
title: ХАРАКТЕРИСТИКА КОМОРБИДНОСТИ КАРДИОЛОГИЧЕСКИХ БОЛЬНЫХ В УСЛОВИЯХ МНОГОПРОФИЛЬНОГО СТАЦИОНАРА
DOI: 10.5281/zenodo.10649153
title: ХАРАКТЕРИСТИКА КОМОРБИДНОСТИ КАРДИОЛОГИЧЕСКИХ БОЛЬНЫХ В УСЛОВИЯХ МНОГОПРОФИЛЬНОГО СТАЦИОНАРА
DOI: 10.6084/m9.figshare.6953753
title: Additional file 1: of TSSC3 promotes autophagy via inactivating the Src-mediated PI3K/Akt/mTOR pathway to suppress tumorigenesis and metastasis in osteosarcoma, and predicts a favorable prognosis

description: Supplementary Materials and Methods. (RTF 91 kb)
DOI: 10.6084/m9.figshare.20581008.v1
title: Additional file 2 of Genome-wide identification and characterization of active ingredients related β-Glucosidases in Dendrobium catenatum

description: Additional file 2: Fig. S1. Transient expression of DcBGLUs in leaves of D. catenatum. Fig. S2. Amino acid sequence alignment of 22 DcBGLU enzymes in D. catenatum. Fig. S3. Analysis of the numbers and types of cis-acting elements in DcBGLU genes. Table S1. Accession numbers for proteins used in the phylogenetic tree. Table S2. Primers used for qRT-PCR validation. Table S3. Primers used for gene cloning. Table S4. Abbreviations.
DOI: 10.6084/m9.figshare.12721018.v1
title: Additional file 1 of Genome-wide identification and expression analysis of YTH domain-containing RNA-binding protein family in common wheat

description: Additional file 1. Sequences of TaYTHs.
DOI: 10.6084/m9.figshare.20056708
title: Additional file 1 of Incidence and Risk Factors Associated with Technique Failure in the First Year of Peritoneal Dialysis: A Single Center Retrospective Cohort Study in Southern China

description: Additional file 1.
DOI: 10.6084/m9.figshare.20056708.v1
title: Additional file 1 of Incidence and Risk Factors Associated with Technique Failure in the First Year of Peritoneal Dialysis: A Single Center Retrospective Cohort Study in Southern China

description: Additional file 1.
DOI: 10.24403/jp.1323297
title: Klapp, E. und Opitz von Boberfeld, W.: Gräserbestimmungsschlüssel für die häufigsten Grünland- und Rasengräser. -3. Aufl. - Berlin und Hamburg : Verlag Paul Parey, 1988 / [rezensiert von] H. Manitz
DOI: 10.6084/m9.figshare.20581005
title: Additional file 1 of Genome-wide identification and characterization of active ingredients related β-Glucosidases in Dendrobium catenatum

description: Additional file 1.
DOI: 10.24403/jp.1323298
title: Klapp, E. und Opitz von Boberfeld, W.: Kräuterbestimmungsschlüssel für die häufigsten Grünland- und Rasenkräuter : Zur Ansprache im blütenlosen Zustand. - 2. Aufl. - Berlin und Hamburg : Verlag Paul Parey, 1988 / [rezensiert von] H. Manitz
DOI: 10.24403/jp.1323299
title: Verzeichnis der Lebermoose von Ascension Island nebst Beschreibung von Cheilolejeunea ascensionis (HOOK. f. et TAYL.) GROLLE, comb. nov. / Riclef Grolle
DOI: 10.6084/m9.figshare.24512656.v2
title: Data for "Extra-pair paternity variation in two passerine birds breeding in a gradient of urbanisation"

description: "nests_warsaw.xlsx" contains nest data for blue tits and great tits."nestlings_warsaw.xlsx" contains nestling data for blue tits and great tits."genotypes_blue_tits_warsaw.csv" and "genotypes_great_tits_warsaw.csv" contain genotypes.
DOI: 10.6084/m9.figshare.6953768
title: Additional file 2: of TSSC3 promotes autophagy via inactivating the Src-mediated PI3K/Akt/mTOR pathway to suppress tumorigenesis and metastasis in osteosarcoma, and predicts a favorable prognosis

description: Supplementary Tables. Table S1. shRNA target sequence used in the experiments. Table S2. Primers used for qRT-PCR in this study. Table S3. Correlation between TSSC3 expression and ATG5 or P62 expression in patients with osteosarcoma. Table S4. Univariate Cox proportional hazard regression analysis for overall survival in patients with osteosarcoma. Table S5. Correlations between ATG5 expression and the metastasis or recurrence of positive-TSSC3 expression osteosarcoma. (RTF 137 kb)
DOI: 10.6084/m9.figshare.8002310.v1
title: Additional file 4: of Unprecedented bacterial community richness in soybean nodules vary with cultivar and water status

description: Dataset 2. Raw data of amino acid profiling. (CSV 14 kb)
DOI: 10.6084/m9.figshare.8002379.v1
title: MOESM2 of Abnormal level of CUL4B-mediated histone H2A ubiquitination causes disruptive HOX gene expression

description: Additional file 2: Table S1. CUL4B PPI_interactions new.
DOI: 10.24403/jp.1323300
title: Kohstall, H.: So schmückt man Gärten mit immergrünen Laubgehölzen, Rhododendron und Heide. - Berlin und Hamburg : Verlag Paul Parey, 1987 / [reserviert von] H. Manitz
DOI: 10.5281/zenodo.10649109
title: Dinoflagellate cyst assemblage data from core JM09-020

description: Absolute abundances (cysts g-1) of dinoflagellate cysts (dinocysts) species, total dinocyst abundance (cysts g-1), relative abundance of dinocysts produced by auto- and heterotrophic dinoflagellate species (%), and dry bulk density (g cm-3) for flux calculation in core JM09-020.
description: This study was supported by grant no. 2020/39/B/ST10/01698 funded by the National Science Centre, Poland.
DOI: 10.5281/zenodo.8322504
title: Dinoflagellate cyst assemblage data from core JM09-020

description: Absolute abundances (cysts g-1) of dinoflagellate cysts (dinocysts) species, total dinocyst abundance (cysts g-1), relative abundance of dinocysts produced by auto- and heterotrophic dinoflagellate species (%), and dry bulk density (g cm-3) for flux calculation in core JM09-020.
description: This study was supported by grant no. 2020/39/B/ST10/01698 funded by the National Science Centre, Poland.