cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1192460.v5
title: Origin of the balanomorph barnacles (Crustacea, Cirripedia, Thoracica): new evidence from the Late Cretaceous (Campanian) of Sweden

description: New material of thoracican cirripedes, traditionally assigned to Brachylepadomorpha and basal Balanomorpha, is described from abundant isolated plates collected from sediment deposited between boulders on a rocky coastline of Late Campanian age (<i>c</i>. 80 Ma) at Ivö Klack in Scania, southern Sweden. Two new genera, <i>Epibrachylepas</i> Gale gen. nov. and <i>Parabrachylepas</i> Gale gen. nov. (type species <i>P. ifoensis</i> Withers, 1935) are described, as is a new species, <i>Epibrachylepas newmani</i> Gale sp. nov<i>. Pachydiadema cretacea</i> Withers, 1935 and <i>Brachylepas guascoi</i> (Bosquet, 1857) are redescribed on the basis of extensive new material. It is concluded that the long-held homologies between lateral plates of pedunculate cirripedes and balanomorphs are incorrect, and a new nomenclature is proposed for the latter group. Cladistic analysis based on 40 morphological characters of 12 species yields a consensus tree showing successive <i>Brachylepas</i> species and <i>Pachydiadema</i> as sister taxa to the crown group balanomorphs, which are here called Neobalanomorpha Gale suborder nov. Both ‘Brachylepadomorpha’ and ‘Brachylepadidae’ are paraphyletic, and together with <i>P. cretacea</i> form a morphocline leading from pedunculate ancestors (<i>Pycnolepas articulata</i>), through to basal sessile forms (<i>B. naissanti</i>, <i>B. guascoi</i>) and on to taxa identified as basal balanomorphs (<i>Parabrachylepas</i>, <i>Epibrachylepas</i>, <i>Pachydiadema</i>). The functional significance of the progressive changes is discussed with reference to living taxa. It is suggested that the radiation of Neobalanomorpha, dominant shallow water thoracicans in the Cenozoic, postdated the K-Pg near-extinction of more basal sessile barnacle groups.http://zoobank.org/urn:lsid:zoobank.org:pub:BB41A405-C0AE-472D-AD09-77D39C6A32FC
DOI: 10.6084/m9.figshare.1190920
title: ecology lab 2

description: This experiment was done on Thursday sept25/2014, at york university keele campus. We went to the wood lot to gather the measurements of each tree. To start with we located a pair of tree almost close in proximity and measure the distance between two trees then we measured the dbh (width) of each trees and its condition. This was done ten times for each pair for a total of 20 tress being measured. Each pair of tree measured was in a straight line with the other pair of tree to be measured.
DOI: 10.6084/m9.figshare.1190933
title: PTBP_Nifti

description: Original nifti images for the pediatric template of brain perfusion: T1, PCASL, CBF, DWI, resting BOLD
DOI: 10.6084/m9.figshare.1190951.v2
title: Evaluating hypoxia-inducible factor-1α mRNA expression in a pelagic fish, Pacific herring Clupea pallasii, as a biomarker for hypoxia exposure

description: A hypoxia-specific responsive gene, hypoxia-inducible factor-1α (HIF-1α), was identified and tested as a potential biomarker for hypoxia exposure in Pacific Herring <em>Clupea pallasii</em>. <em>Lab experiments zip:</em> 'Threshold_data.CSV' HIF-1a expression data from Theshold experiement 'Timecourse_data.CSV' HIF-1a expression data from Time-Course experiement 'Mean_threshold_plot.CSV' Mean HIF-1a expression and SE from Threshold experiment for Fig. 5 'Mean_timecourse_plot.CSV' Mean HIF-1a expression and SE from Time-Course experiment for Fig. 6 'ANOVA_Threshold.R' code for two-way ANOVA and Fig.5 'ANOVA_Timecourse.R' code for two-way ANOVA and Fig.6 <em>Field data zip:</em> 'All_field_qPCR.CSV' is the HIF-1a expression from the field and binary data identifying significantly elevated levels of expression. 'GLM_Field.R' is the code for the generalized linear models run on the binary field data.
DOI: 10.6084/m9.figshare.1190934.v1
title: Woodlot Dataset 3

description: The lab was conducted by myself and 3 peers: Hassan, Enrique and Brad. The objective of woodlot data set 3 portion of the lab, was to observe the trees at close proximity of eachother and look at the conditions of the trees. It is hypothesized that the same species of trees, will exhibit similar conditions in terms of distance at breast height and appearance due to the close proximity and similar environmental conditions the trees are all exposed to. For woodlot dataset 3, Hassan and I walked to the edge of the woodlot, attached the transect measuring tape to a branch to keep it firm, and walked straight with the tape towards the centre of the woodlot up to 30m. We then layed the measuring tape on the floor and walked back to the edge from where we started. Every instance we encountered a tree while walking from the edge to the centre, we measured and recorded the distance of the tree and the distance of the subsequent tree. The distances were subtracted to get the distance from tree 1 to tree 2 in meters. We also measured and recorded diameter at breast height by wrapping the tape around the tree horizontally and measuring it in centimeters. Lastly, we observed the condition of the tree visually and ranked it from 0-3, where 0 was considered dead and decaying and 3 was healthy with an abundant canopy of leaves. 10 pairs of tree were used for this experiment. After all recordings were made, the transect measuring tape was retreived.
DOI: 10.6084/m9.figshare.1190919
title: Ecology Lab 2

description: Quadrats were dropped across the grasslands and the species within the quadrat were observerd. The quadrats were dropped at random. The species and the number of the individuals within that specie were documented. Furthermore, the richness within the quadrat and the how much of the space a certain specie covers within the quadrat was also documented.
DOI: 10.6084/m9.figshare.1190920.v1
title: ecology lab 2

description: This experiment was done on Thursday sept25/2014, at york university keele campus. We went to the wood lot to gather the measurements of each tree. To start with we located a pair of tree almost close in proximity and measure the distance between two trees then we measured the dbh (width) of each trees and its condition. This was done ten times for each pair for a total of 20 tress being measured. Each pair of tree measured was in a straight line with the other pair of tree to be measured.
DOI: 10.6084/m9.figshare.1190951.v3
title: Hypoxia-inducible factor-1α mRNA expression in Pacific herring Clupea pallasii

description: A hypoxia-specific responsive gene, hypoxia-inducible factor-1α (HIF-1α), was identified and tested as a potential biomarker for hypoxia exposure in Pacific Herring <em>Clupea pallasii</em>. <em>Lab experiments zip:</em> 'Threshold_data.CSV' HIF-1a expression data from Theshold experiement 'Timecourse_data.CSV' HIF-1a expression data from Time-Course experiement 'Mean_threshold_plot.CSV' Mean HIF-1a expression and SE from Threshold experiment for Fig. 5 'Mean_timecourse_plot.CSV' Mean HIF-1a expression and SE from Time-Course experiment for Fig. 6 'ANOVA_Threshold.R' code for two-way ANOVA and Fig.5 'ANOVA_Timecourse.R' code for two-way ANOVA and Fig.6 <em>Field data zip:</em> 'All_field_qPCR.CSV' is the HIF-1a expression from the field and binary data identifying significantly elevated levels of expression. 'GLM_Field.R' is the code for the generalized linear models for the binary field data.
DOI: 10.6084/m9.figshare.1190916
title: Grassland Plant Specie Sampling

description: Description and Methods: Data was collected, with the help of Arlene Tran, in a York University grassland abundant with different species of insects, plants, trees, and grass. Data was collected on a hot and sunny September afternoon, in areas exposed to both sun and shade. A target plant specie that was both visible and abundant in the grassland was selected as the specie to be examined. Transects were used in order to collect the data; the transect was randomly laid down in the grassland. When the target plant specie was observed along the transect tape, the distance on the transect tape it appeared at, the height of the plant, the number of leaves and flowers on the plant, and the rate of abundance of other species around that plant was observed and recorded. 50 plant individuals were observed. This data was collected in order to explore the different plant populations and communities within the grassland.
DOI: 10.6084/m9.figshare.1190917
title: Lab 2

description: The experiment was conducted in York University grassland on Thursday, Sep.25.2014 to measure the abundance and diversity of various plant species/ genus in the campus grassland.In order to estimate local flora populations an experiment was conducted by placing a 1 square meter grid on the ground and surveying the plant species within it by abundance, richness, and cover. The plant classification was done by genus or species where appropriate. The abundance was measured by subdividing the grid into 4 sub-quadrats and counted the number or plants per species within it. The richness was counted as the number of different plants within each quadrat. Finally, the cover for each quadrat was estimated visually. The experiment was repeated 20 times by placing the quadrat arbitrarily in the field.
DOI: 10.6084/m9.figshare.1190933.v14
title: PTBP_Nifti

description: Original nifti images for the pediatric template of brain perfusion: T1, PCASL, CBF, DWI, resting BOLD
DOI: 10.6084/m9.figshare.1190919.v2
title: Ecology Lab 2

description: Quadrats were dropped across the grasslands and the species within the quadrat were observerd. The quadrats were dropped at random. The species and the number of the individuals within that specie were documented. Furthermore, the richness within the quadrat and the how much of the space a certain specie covers within the quadrat was also documented.
DOI: 10.6084/m9.figshare.1190951.v4
title: Hypoxia-inducible factor-1α mRNA expression in Pacific herring Clupea pallasii

description: A hypoxia-specific responsive gene, hypoxia-inducible factor-1α (HIF-1α), was identified and tested as a potential biomarker for hypoxia exposure in Pacific Herring <em>Clupea pallasii</em>. <em>Lab experiments zip:</em> 'Threshold_data.CSV' HIF-1a expression data from Theshold experiement 'Timecourse_data.CSV' HIF-1a expression data from Time-Course experiement 'Mean_threshold_plot.CSV' Mean HIF-1a expression and SE from Threshold experiment for Fig. 5 'Mean_timecourse_plot.CSV' Mean HIF-1a expression and SE from Time-Course experiment for Fig. 6 'ANOVA_Threshold.R' code for two-way ANOVA and Fig.5 'ANOVA_Timecourse.R' code for two-way ANOVA and Fig.6 <em>Field data zip:</em> 'All_field_qPCR.CSV' is the HIF-1a expression from the field and binary data identifying significantly elevated levels of expression. 'GLM_Field.R' is the code for the generalized linear models for the binary field data.
DOI: 10.6084/m9.figshare.1190917.v1
title: Lab 2

description: The experiment was conducted in York University grassland on Thursday, Sep.25.2014 to measure the abundance and diversity of various plant species/ genus in the campus grassland.In order to estimate local flora populations an experiment was conducted by placing a 1 square meter grid on the ground and surveying the plant species within it by abundance, richness, and cover. The plant classification was done by genus or species where appropriate. The abundance was measured by subdividing the grid into 4 sub-quadrats and counted the number or plants per species within it. The richness was counted as the number of different plants within each quadrat. Finally, the cover for each quadrat was estimated visually. The experiment was repeated 20 times by placing the quadrat arbitrarily in the field.
DOI: 10.6084/m9.figshare.1190919.v1
title: Ecology Lab 3

description: Quadrats were dropped across the grasslands and the species within the quadrat were observerd. The quadrats were dropped at random. The species and the number of the individuals within that specie were documented. Furthermore, the richness within the quadrat and the how much of the space a certain specie covers within the quadrat was also documented.
DOI: 10.6084/m9.figshare.1190933.v15
title: PTBP_Nifti

description: Original nifti images for the pediatric template of brain perfusion: T1, PCASL, CBF, DWI, resting BOLD
DOI: 10.6084/m9.figshare.1190951.v5
title: Hypoxia-inducible factor-1α mRNA expression in Pacific herring Clupea pallasii

description: A hypoxia-specific responsive gene, hypoxia-inducible factor-1α (HIF-1α), was identified and tested as a potential biomarker for hypoxia exposure in Pacific Herring <em>Clupea pallasii</em>. <em>Lab experiments zip:</em> 'Threshold_data.CSV' HIF-1a expression data from Theshold experiement 'Timecourse_data.CSV' HIF-1a expression data from Time-Course experiement 'Mean_threshold_plot.CSV' Mean HIF-1a expression and SE from Threshold experiment for Fig. 5 'Mean_timecourse_plot.CSV' Mean HIF-1a expression and SE from Time-Course experiment for Fig. 6 'ANOVA_Threshold.R' code for two-way ANOVA and Fig.5 'ANOVA_Timecourse.R' code for two-way ANOVA and Fig.6 <em>Field data zip:</em> 'All_field_qPCR.CSV' is the HIF-1a expression from the field and binary data identifying significantly elevated levels of expression. 'GLM_Field.R' is the code for the generalized linear models for the binary field data.
DOI: 10.6084/m9.figshare.1190889
title: Ecology Lab 2

description: This lab was conducted in the grasslands at York University. The quadrant was placed around the grasslands at different random locations. Withing each quadrant, the different number of plant species was eyeballed and listed. Along with their abudnace, richness and percent cover. Abundance was calculated by counting the number of individuals of one species in the quadrant. Richness was the total number of different species in the quadrant. Percent cover of each species in a quadrant was estimated by eyeballing or by calculating it of smaller region withing the quadrant.
DOI: 10.6084/m9.figshare.1190880
title: Biol2050 lab2

description: quadrant was placed on the grass field randomly. name, number of species and number of individuals of each species were recorded. same procedure was repeated 20 times and data was recorded.
DOI: 10.6084/m9.figshare.1190889.v1
title: Ecology Lab 2

description: This lab was conducted in the grasslands at York University. The quadrant was placed around the grasslands at different random locations. Withing each quadrant, the different number of plant species was eyeballed and listed. Along with their abudnace, richness and percent cover. Abundance was calculated by counting the number of individuals of one species in the quadrant. Richness was the total number of different species in the quadrant. Percent cover of each species in a quadrant was estimated by eyeballing or by calculating it of smaller region withing the quadrant.
DOI: 10.6084/m9.figshare.1190933.v16
title: PTBP_Nifti

description: Original nifti images for the pediatric template of brain perfusion: T1, PCASL, CBF, DWI, resting BOLD
DOI: 10.6084/m9.figshare.1190880.v1
title: Biol2050 lab2

description: quadrant was placed on the grass field randomly. name, number of species and number of individuals of each species were recorded. same procedure was repeated 20 times and data was recorded.
DOI: 10.6084/m9.figshare.1190887
title: Rocky intertidal zonation pattern in Antofagasta, Chile: invasive species and shellfish gathering

description: Biological invasions affecting rocky intertidal zonation patterns, communities and/or food-webs, yield information on species interactions and help in understanding ecosystem functioning. In the Bay of Antofagasta, northern Chile, the non-indigenous barrel-shaped tunicate Pyura praeputialis, originally from Australia, has invaded (in the past century or so) and monopolized a major portion of the mid-intertidal rocky shore, displacing upshore the ecological center of the native dominant mussel P. purpuratus. Unlike in Australia, in Antofagasta the sea squirt is consumed and subjected to intensive artisan exploitation. Long-term monitoring protocols show that in the past 10 years Antofagasta’s tunicate population has experienced a drastic decline, affecting the intertidal zonation pattern and that at the same time a deterioration of ecosystem services has occurred.
DOI: 10.6084/m9.figshare.1190951.v6
title: Hypoxia-inducible factor-1α mRNA expression in Pacific herring Clupea pallasii

description: A hypoxia-specific responsive gene, hypoxia-inducible factor-1α (HIF-1α), was identified and tested as a potential biomarker for hypoxia exposure in Pacific Herring <em>Clupea pallasii</em>. <em>Lab experiments:</em> 'Threshold_data.CSV' HIF-1a expression data from Theshold experiment 'Timecourse_data.CSV' HIF-1a expression data from Time-Course experiment 'Mean_threshold_plot.CSV' Mean HIF-1a expression and SE from Threshold experiment for Fig. 5 'Mean_timecourse_plot.CSV' Mean HIF-1a expression and SE from Time-Course experiment for Fig. 6 'ANOVA_Threshold.R' code for two-way ANOVA and Fig.5 'ANOVA_Timecourse.R' code for two-way ANOVA and Fig.6 <em>Field data:</em> 'All_field_qPCR.CSV' is the HIF-1a expression from the field and binary data identifying significantly elevated levels of expression. 'GLM_Field.R' is the code for the generalized linear models for the binary field data.
DOI: 10.6084/m9.figshare.1190933.v17
title: PTBP_Nifti

description: Original nifti images for the pediatric template of brain perfusion: T1, PCASL, CBF, DWI, resting BOLD
DOI: 10.6084/m9.figshare.1190856
title: Data from: Increasing modularity when downscaling networks from species to individuals

description: This fileset contains all data and scripts used in the article: C Tur, JM Olesen & A Traveset. (2014) Increasing modularity when downscaling networks from species to individuals doi:10.1111/oik.01668 Article summary: Downscaling networks from species to individuals is a useful approach to incorporate inter-individual variation and to investigate whether topology of species-based networks results from processes acting at the scale of individuals, such as foraging behaviour. Here, we analyzed pollen-transport networks at two scales, i.e. pollinator species-plant species (sp-sp) and pollinator individuals-plant species (i-sp), and assessed whether modularity – a prevalent pattern in most pollination networks – is consistent across both scales. To test this we use three different algorithms developed for the calculation of modularity (unipartite, bipartite and weighted bipartite modularity) and compare the results obtained. Downscaling networks revealed a higher modular structure in i-sp networks than in sp-sp networks, regardless of the modular metric used. Using a null model approach, we show that modularity at the individual scale is originated by the existence of a high heterogeneity and specialization in the partition of pollen resources among conspecific individuals, a pattern which obviously cannot be observed at the species level. Modules in i-sp networks consisted of individuals sometimes neither taxonomically nor functionally related, but sharing common pollen resources at different moments of the flowering season. Interestingly, conspecific individuals may belong to different modules. Both plant and insect phenologies were important drivers of the modularity detected in individual-based networks, even determining the topological roles of nodes in the networks. A temporal turnover of modules was identified, i.e. modules of individuals assembled and disassembled over time as species modify their foraging choices throughout the flowering season adjusting to ecological conditions. Downscaling from species to individual-based networks is a promising approach to study the interplay among structural patterns and processes at different, but interdependent organizational levels.
DOI: 10.6084/m9.figshare.1190951.v7
title: Hypoxia-inducible factor-1α mRNA expression in Pacific herring Clupea pallasii

description: A hypoxia-specific responsive gene, hypoxia-inducible factor-1α (HIF-1α), was identified and tested as a potential biomarker for hypoxia exposure in Pacific Herring <em>Clupea pallasii</em>. <em>Lab experiments:</em> 'Threshold_data.CSV' HIF-1a expression data from Theshold experiment 'Timecourse_data.CSV' HIF-1a expression data from Time-Course experiment 'Mean_threshold_plot.CSV' Mean HIF-1a expression and SE from Threshold experiment for Fig. 5 'Mean_timecourse_plot.CSV' Mean HIF-1a expression and SE from Time-Course experiment for Fig. 6 'ANOVA_Threshold.R' code for two-way ANOVA and Fig.5 'ANOVA_Timecourse.R' code for two-way ANOVA and Fig.6 <em>Field data:</em> 'All_field_qPCR.CSV' is the HIF-1a expression from the field and binary data identifying significantly elevated levels of expression. 'GLM_Field.R' is the code for the generalized linear models for the binary field data.
DOI: 10.6084/m9.figshare.1190933.v18
title: PTBP_Nifti

description: Original nifti images for the pediatric template of brain perfusion: T1, PCASL, CBF, DWI, resting BOLD
DOI: 10.6084/m9.figshare.1190797
title: A pharmacophore of Ebola active compounds

description: results from searching the microsource library with a pharmacophore based on compounds active vs Ebola in vitro and in vivo
DOI: 10.6084/m9.figshare.1190951.v8
title: Hypoxia-inducible factor-1α mRNA expression in Pacific herring Clupea pallasii

description: A hypoxia-specific responsive gene, hypoxia-inducible factor-1α (HIF-1α), was identified and tested as a potential biomarker for hypoxia exposure in Pacific Herring <em>Clupea pallasii</em>. <em>Lab experiments:</em> 'Threshold_data.CSV' HIF-1a expression data from Theshold experiment 'Timecourse_data.CSV' HIF-1a expression data from Time-Course experiment 'Mean_threshold_plot.CSV' Mean HIF-1a expression and SE from Threshold experiment for Fig. 5 'Mean_timecourse_plot.CSV' Mean HIF-1a expression and SE from Time-Course experiment for Fig. 6 'ANOVA_Threshold.R' code for two-way ANOVA and Fig.5 'ANOVA_Timecourse.R' code for two-way ANOVA and Fig.6 <em>Field data:</em> 'All_field_qPCR.CSV' is the HIF-1a expression from the field and binary data identifying significantly elevated levels of expression. 'GLM_Field.R' is the code for the generalized linear models for the binary field data.
DOI: 10.6084/m9.figshare.1190789
title: second ecology lab: quadrant and transect measurements

description: This environmental experiment was done in the woodlot area. During this part of the experiment 10 pairs of trees were chosen. Each pair has one adult tree and one sapling tree. The distance between each pair was measured using a transect tape. The other measurement that was done was the diameter breast height (DBH) for both trees of each pair. This type of measurement was done using the transect tape that was placed around half of the tree trunk. The last measurement that had to be done was the percentage estimation of the leaf(s) coverage on each quadrant. This was accomplished by forming a square that was considered as the quadrant using your fingers, then placing the fingers on the area of the leaf(s) that must be estimated.
DOI: 10.6084/m9.figshare.1190796
title: A pharmacophore of Ebola active compounds

description: results from searching a set of over 2000 drugs from CDD with the pharmacophore for in vitro / in vivo Ebola active compounds
DOI: 10.6084/m9.figshare.1190797.v1
title: A pharmacophore of Ebola active compounds

description: results from searching the microsource library with a pharmacophore based on compounds active vs Ebola in vitro and in vivo