cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.g9r36/14
title: Cissus populnea SRXTM DTS video

description: Video of digital SRXTM tomograms in transverse section through a herbarium fruit of Cissus populnea Guill. & Perr. (K Herbarium sheet collector no. 350)
DOI: 10.5061/dryad.g9r36/15
title: Cissus rondoensis SRXTM DTS video

description: Video of digital SRXTM tomograms in transverse section through a herbarium fruit of Cissus rondoensis Verdc. (K Herbarium sheet collector no. 523)
DOI: 10.5061/dryad.g9r36/8
title: Cissus oreophila SRXTM DTS video

description: Video of digital SRXTM tomograms in transverse section through a herbarium fruit of Cissus oreophila Gilg & M.Brandt (K Herbarium sheet collector no. 693)
DOI: 10.5061/dryad.g9r36/9
title: Cissus petiolata SRXTM DTS video

description: Video of digital SRXTM tomograms in transverse section through a herbarium fruit of Cissus petiolata Hook.f. (K Herbarium sheet collector no. 492)
DOI: 10.5061/dryad.gp3ng/1
title: development experiment data for dryad

description: Data from the development experiment.  Includes the number of focal lunges measured on days 1 and 2 for each individual (day1.focal.lunge and day2.focal.lunge), the number of times each focal male was attacked by stimulus males (day1.at.focal.lunge, day2.at.focal.lunge), and the amount of time the focal male spent on patch on day 2 (day2.time) as well as identifiers such as genotype.
DOI: 10.5061/dryad.gp3ng/2
title: preference data for dryad

description: Data from the group-size preference experiment.  Includes the number of observations that the focal male was observed on the food patches containing large or small groups, or elsewhere in the arena, plus identifiers such as genotype.
DOI: 10.5061/dryad.hb4jd/1
title: Lu_et_al_datamatrix

description: Data matrix of Qingmenodus
DOI: 10.5061/dryad.jp34d/1
title: St. Marks amphibian metacommunity encounter histories (2009-2014)

description: Amphibian metacommunity encounter histories, collected on St. Marks National Wildlife Refuge, 2009 to 2014. Fall and spring sampling occasions occurred each year during the months of September-October and March-April, respectively. Species codes are as follows: ATAL, Mole salamander (Ambystoma talpoideum); PORN, Ornate chorus frog (Pseudacris ornata); RGRY, Pig frog (Rana grylio); FISH, all fish species detected (see manuscript for further details).
DOI: 10.5061/dryad.m7340/1
title: R script for clustering specimens based on measurement data

description: Script for performing UPGMA hierarchical cluster analysis on the R platform.
DOI: 10.5061/dryad.m7340/2
title: R script for Principal Component Analysis (PCA): specimens on a morphometric ordination space

description: Script for performing Principal Component Analysis (PCA) on the R platform.
DOI: 10.5061/dryad.m7340/3
title: Script for mapping the distribution of Stigmatomma species in Madagascar and Seychelles

description: R code for making species distribution maps. Note: Our maps use the ecoregion outlines of Madagascar, which were based on the vector data disclosed by the Terrestrial Ecoregions of the World (available at the WWF website). However, the original outlines were slightly mismatching the relief of Madagascar. To solve this, we combined the original ecoregion data with data from the Remaining Primary Vegetation of Madagascar (available at the Kew Royal Botanic Gardens website), which has more natural outlines.
DOI: 10.5061/dryad.m7340/4
title: Linear morphometry of Stigmatomma species in the Malagasy bioregion – raw data set of measurements and indices

description: Measurements were taken on a Leica MZ APO stereomicroscope, rounded to the nearest 0.01 mm.          Head length (HL): in fullface view, straight line from the anterior clypeal margin to the midpoint of a straight imaginary line connecting posterior corners of the head.Head width (HW): maximum width of the head, including eyes when present.Head width 2 (HW2): width of the head immediately posterior to the posterolateral margin of the clypeus.Scape length (SL): length of the scape (first antennal segment), excluding its basal constriction or neck and condyle.Mandibular length (ML): outer length of the mandible.Weber’s length of mesosoma (WL): diagonal length of the mesosoma in profile, from base of anterior slope of pronotum to metapleural lobe.Propodeal posterior width (PPW): width of posterior margin of propodeal dorsal face, in dorsal view.Petiolar length (PtL): maximum length of petiole in dorsal view.Petiolar width (PtW): maximum width of petiole in dorsal view.Cephalic index (CI): HW/HL ×100.Scape index (SI): SL/HL ×100.Mandibular index (MI): ML/HL ×100.Petiolar index (PtI): PtL/PtW ×100.
DOI: 10.5061/dryad.pv910/1
title: Appendix S5 - Simulation source code

description: This folder contains the C++ source code as well as pre-compiled programs for the simulation model presented in the manuscript "Genetic Allee effects and their interaction with ecological Allee effects" by Meike J. Wittmann, Hanna Stuis & Dirk Metzler in Journal of Animal Ecology. To re-compile, run "make". The simulation program operates on an input file. See Appendix S6 for the R scripts that we used to generate the input files for our simulations. Please note that the simulation program contains some options that are not used in this paper and that it was only run on Linux machines and has not been tested on other platforms.
DOI: 10.5061/dryad.sp70m/1
title: Dainese_etal_2016_JAE

description: The excel file contains data regarding (1) landscape composition, (2) field margin structure, (3) predation index (cage experiment), (4) abundance of aphids, vegetation-dwelling predators (ladybirds, web spiders and lacewings), and parasitism rate, (5)                                                                                       abundance of ground-dwelling predators (carabids, rove beetles and cursorial spiders), (6) weed species richness and weed cover, (7) visitation rate (phytometer experiment), and (8) seed set (phytometer experiment).
DOI: 10.5061/dryad.01sd0/1
title: Seabird species richness and environmental data

description: This datafile contains the species richness and environmental data used by Grecian et al. to examine the drivers of seabird species richness in the Canary Current Large Marine Ecosystem. Species richness data was calculated across a network of 200 km tessellated hexagons; the Cartesian x and y coordinates of these are in the first two columns. The following columns include Species Richness; average sea surface temperature; average chlorophyll a; and a measure of null usage. The data were analysed using a GAM with a soap film smoother. For full details see Supplementary materials.
DOI: 10.5061/dryad.12pn2/1
title: Experimental data of coleoid decay

description: pH recordings over 14 day periods for octopus and squid carcasses and body parts. Ammonia readings for each experimental run.
DOI: 10.5061/dryad.2435k/11
title: Dryad LOCAL Baron Fork Eldon

description: Baron Fork of Illinois River, northeastern Oklahoma
DOI: 10.5061/dryad.2435k/3
title: Dryad GLOBAL Bread Ck 18April2016

description: Bread Creek, Ouachita Mountains, Arkansas
DOI: 10.5061/dryad.2435k/4
title: Dryad GLOBAL Brier Seine 1976-2012

description: Brier Creek, Marshall County, Oklahoma
DOI: 10.5061/dryad.2435k/5
title: Dryad GLOBAL Crooked Creek 18April2016

description: Crooked Creek, Ouachita Mountains, Arkansas
DOI: 10.5061/dryad.2435k/6
title: Dryad GLOBAL Crutcho-Kuhlman

description: Crutcho Creek, Oklahoma County, Oklahoma
DOI: 10.5061/dryad.2435k/7
title: Dryad GLOBAL Kiamichi 1981-2014

description: Kiamichi River, southeastern Oklahoma
DOI: 10.5061/dryad.2435k/8
title: Dryad GLOBAL Piney 1972-2012

description: Piney Creek, Izard County, Arkansas
DOI: 10.5061/dryad.2kg70/1
title: 1_Alignment
DOI: 10.5061/dryad.2kg70/2
title: 2_jModelTest
DOI: 10.5061/dryad.2kg70/3
title: 3_MrBayes
DOI: 10.5061/dryad.2kg70/4
title: 4_RAxML
DOI: 10.5061/dryad.2kg70/5
title: 5_BEAST
DOI: 10.5061/dryad.3n9r2/1
title: Ojima and Jiang Raw Data

description: Individual abundance data for each species collected in the lab, as well as calculated alpha and beta diversities.
DOI: 10.5061/dryad.488dk/1
title: Figure 1 Data

description: Comma-separated values formatted file containing data presented in Figure 1 of the manuscript. rep = replicate, tra = transfer number, spc = species (‘pf’ = Pseudomonas fluorescens SBW25, ‘pp’ = Pseudomonas putida KT2440), mrk = species markers, mer = mercury concentration (µg/g), cul = culture type (‘ss’ = single-species, ‘co’ = co-culture), type = PCR genotype (‘p+ t+’ = plasmid and transposon, ‘p- t+’ = transposon without plasmid, ‘p- t-‘ = neither plasmid nor transposon), num.cols = number of positive colonies, tot.cols = total number of colonies tested, type.dens = calculated density (cfu/g), tot.dens = calculated total density (cfu/g).
DOI: 10.5061/dryad.488dk/2
title: Figure 1 Data (endpoint)

description: Comma separated values formatted file containing data presented in Figure 1 of the manuscript. This table includes data obtained from spreading samples on KB agar containing mercury. spc = species (as above), cul = culture type (as above), mer = mercury concentration (as above), plasmid_survived = number of populations with plasmid-positive clones at transfer 65, plasmid_extinct = number of populations without plasmid-positive clones at transfer 65.
DOI: 10.5061/dryad.49m29/2
title: Growth_6months

description: Net growth in height and number of leaves, number of new leaves, and number of lost leaves, for Brosimum lactescens seedlings after six months.
DOI: 10.5061/dryad.49m29/3
title: Growth_11months

description: Net growth in height and number of leaves, number of new leaves, and number of lost leaves, for Brosimum lactescens seedlings after eleven months.
DOI: 10.5061/dryad.49m29/4
title: survival

description: Survival of Brosimum lactescens seedlings during a period of eleven months.
DOI: 10.5061/dryad.4j43c/1
title: Dryad_Meineke_ProcB2016

description: These are data describing street tree responses to urban warming. For more details, see associated manuscript.
DOI: 10.5061/dryad.56gn0/1
title: data for cuticle evolution

description: Data on patterns of distribution of eggshell cuticles composed of nanospheres across 296 species of birds in relation to nesting ecology parameters.
DOI: 10.5061/dryad.5b331/1
title: Data and MATLAB Scripts for reproducing figures

description: This ZIP archive contains the raw data and MATLAB scripts for reproducing the figures in the paper. To generate the figures, run Make_Cavanagh_figures.m. To find out more about the file contents, please read the Readme file.
DOI: 10.5061/dryad.b0314/1
title: Mason et al 2016 combined raw data

description: All raw data and metadata for Mason et al. 2016.
DOI: 10.5061/dryad.cs5th/1
title: TelegansThermalTolerance

description: Provides experimental data on ecological background, morphological measures, and physiological responses to different temperatures.  Used for all analyses in manuscript.
DOI: 10.5061/dryad.cs78t/1
title: Lobefinder_v1.0
DOI: 10.5061/dryad.dg27h/1
title: Field data_Smith et al. 2016

description: This file contains data obtained from thermal images and linearised and equalised photographs of lizards (combined dorsal regions) and immediate backgrounds taken in the wild. Luminance and chroma were calculated from RGB values as described in the paper.
DOI: 10.5061/dryad.dg27h/2
title: Laboratory data_Smith et al. 2016

description: This file shows average UV-Vis, NIR reflectance spectra, and calculated Standarised Differences measured for both dorsal and ventral body regions of lizards for the laboratory experiments.
DOI: 10.5061/dryad.g703s/1
title: Meep front end control file for FDTD calculation

description: This the scheme code written for calculating transmittance down biological fibers using Meep, the open source Finite Difference Time Domain (FDTD) software. The output of this code are absolute flux values through each defined flux plane determined using FDTD.
DOI: 10.5061/dryad.g703s/2
title: h5 files for input in eps3Dtrans3.ctl

description: These h5 files are files necessary for inputing arbitrary dielectric structure to front end code for meep. These files were generated from binary TEM images of biological light guides. Transmittance through fibers with these cross sections were described in the paper.
DOI: 10.5061/dryad.g703s/3
title: TEM images

description: These are TEM images in tiff format described by the paper. These images were made binary and de-speckled for use in Meep FDTD code.
DOI: 10.5061/dryad.g9r36/16
title: Cissus sciaphila SRXTM DTS video

description: Video of digital SRXTM tomograms in transverse section through a herbarium fruit of Cissus sciaphila Gilg (K Herbarium sheet collector no. 101)
DOI: 10.5061/dryad.g9r36/17
title: Cissus smithiana SRXTM DTS video

description: Video of digital SRXTM tomograms in transverse section through a herbarium fruit of Cissus smithiana (Baker) Planch. (K Herbarium sheet collector no. 416)
DOI: 10.5061/dryad.g9r36/18
title: Cissus tiliifolia SRXTM DTS video

description: Video of digital SRXTM tomograms in transverse section through a herbarium fruit of Cissus tiliifolia Planch. (K Herbarium sheet collector no. 240)
DOI: 10.5061/dryad.g9r36/19
title: Cissus dinklagei µCT DTS video

description: Video of digital µCT tomograms in transverse section through a herbarium fruit of Cissus dinklagei Gilg & M.Brandt (K Herbarium sheet collector no. 5207)
DOI: 10.5061/dryad.g9r36/20
title: Cissus integrifolia 1 µCT DTS video

description: Video of digital µCT tomograms in transverse section through a herbarium fruit of Cissus integrifolia (Baker) Planch. (K Herbarium sheet collector no. 8517, a)
DOI: 10.5061/dryad.g9r36/21
title: Cissus integrifolia 2 µCT DTS video

description: Video of digital µCT tomograms in transverse section through a herbarium fruit of Cissus integrifolia (Baker) Planch. (K Herbarium sheet collector no. 8517, b)
DOI: 10.5061/dryad.g9r36/22
title: Cissus populnea µCT DTS video

description: Video of digital µCT tomograms in transverse section through a herbarium fruit of Cissus populnea Guill. & Perr. (K Herbarium sheet collector no. 350)
DOI: 10.5061/dryad.g9r36/23
title: Cissus crenulata µCT DTS video

description: Video of digital µCT tomograms in transverse section through a fossilized seed (the holotype) of Cissus crenulata Adams, Collinson, S.Y. Smith & Bamford comb. nov. (NHMUK specimen V33753)
DOI: 10.5061/dryad.g9r36/24
title: Cissus andrewsii µCT DTS video

description: Video of digital µCT tomograms in transverse section through a fossilized seed (the holotype) of Cissus andrewsii Adams, Collinson, S.Y. Smith & Bamford sp. nov. (NHMUK specimen V68501)
DOI: 10.5061/dryad.g9r36/25
title: Cissus rusingensis (holotype) µCT DTS video

description: Video of digital µCT tomograms in transverse section through a fossilized seed (the holotype) of Cissus rusingensis Adams, Collinson, S.Y. Smith & Bamford sp. nov. (KNM specimen R117.1981.314)
DOI: 10.5061/dryad.h5b45/1
title: Cleaned taxonomic occurrences of Cenozoic marine invertebrates

description: Table of occurrences of Cenozoic marine invertebrate species, which are found in at least two consecutive time intervals (bins).
DOI: 10.5061/dryad.j5sf2/1
title: Sampling locations, time-since-last-fire, and microsatellite genotypes for Six-lined Racerunner samples from Highlands Co Florida USA
DOI: 10.5061/dryad.m4r46/1
title: meanheights1

description: Nexus file of maximum clade credibility tree.
DOI: 10.5061/dryad.m4r46/2
title: MechData

description: Dimensionally size-corrected, log10-transformed data file.
DOI: 10.5061/dryad.m4r46/3
title: DFAmorpho

description: Dimensionally size-corrected, log10 transformed data file for discriminant analysis.
DOI: 10.5061/dryad.m4r46/4
title: BurnsShultzMechDataAnalysis

description: R script for all phylogenetic comparative analysis.
DOI: 10.5061/dryad.mg529/2
title: Madliger Love_EAP 2016_Clipped Females

description: Baseline corticosterone (CORT), fitness, and other environmental and reproductive variables associated with feather-clipped female tree swallows (2011).
DOI: 10.5061/dryad.n8bm9/1
title: Mycorrhizal state information for reconstruction of the mycorrhizal symbiosis in seed plants.

description: The data file consists for 4 spreadsheet tabs:                    Table A1: A list of species records for mycorrhizal state from literature sources. Scrubbed names represent records from the taxonomic name resolution service (TNRS). Citations for each source are provided in the main manuscript. Published records that contained mutiple observations are indicated by multiple state identifiers (i.e., AM AM EM).                          Table A2: Species level list of mycorrhizal states derived from Table A1.                                                                            Table A3: For those species that matched the Zanne et al. (2013) phylogeny, the number of literature observations for the state of each species is indicated, along with the consensus state used in the analysis.Table A4: The final list of species matched with the phylogeny, along with the consensus mycorrhizal state.
DOI: 10.5061/dryad.pv910/2
title: Appendix S6 - R scripts to start and analyze simulations

description: see ReadMe file
DOI: 10.5061/dryad.qf2t8/1
title: Data for Main Figures and Supporting Figures

description: This file contains datasheets for Fig 1, Fig 2, Fig 3, Fig 4, Fig 5, S2 Fig, S3 Fig, S4 Fig, S5 Fig and S6 Fig.
DOI: 10.5061/dryad.s2692/1
title: Data from: Mycorrhizal feedback is not associated with the outcome of competition in old-field perennial plants

description: This file contains biomass, root colonization, and root diameter data used to test hypotheses described in Stanescu S., Maherali H. 2016. Mycorrhizal feedback is not associated with the outcome of competition in old-field perennial plants. Oikos 10.1111/oik.03580
DOI: 10.5061/dryad.tj693/1
title: Individual calling data

description: Calling effort data: each row represents an observation for one night's calling (in seconds) for an individual male. Variables include individual ID, Group (males were sacrificed at different timepoints), Diet_cen (diet treatment, centred with single-unit deviations), Mating_num (female-access treatment, not centred, single-unit deviations), callDay (days post-eclosion for the recording), sumSecs (number of seconds the male spent calling), Lifespan, F_presence (whether a female was present or not), F_history (how many previous night's a male had had access to females).
DOI: 10.5061/dryad.tj693/2
title: Individual life history data

description: Data on individual morphology, energy storage, lifespan, treatment groups, etc. Also includes flags for energy storage where the measurements were outside the normal range. Scaled mass index (SMI) is given for eclosion (0), and end of weeks 1 and 2 post-eclosion.
DOI: 10.5061/dryad.128jr/1
title: SuppIementary data set 1-4

description: The Supplementary data set 1-4 includes material referred to the newly introduced species Kaupitherium gruelli n. gen. and n. sp. and Kaupitherium bronni (Krauss, 1858) as well as cranial, mandibular, dental, and postcranial measurements of the respective species.
DOI: 10.5061/dryad.22782/1
title: Run 1

description: Compressed file containing: 1) Forward sequence file 2) Reverse sequence file 3) File with experiment name, sample name and the tags, the forward primer and the reverse primer sequence associated.
DOI: 10.5061/dryad.22782/2
title: Run 2

description: Compressed file containing: 1) Forward sequence file 2) Reverse sequence file 3) File with experiment name, sample name and the tags, the forward primer and the reverse primer sequence associated.
DOI: 10.5061/dryad.2435k/10
title: Dryad LOCAL Ballard Creek 1981-2010

description: Ballard Creek, Adair County, Oklahoma
DOI: 10.5061/dryad.2435k/12
title: Dryad LOCAL Blue River

description: Blue River, south central Oklahoma
DOI: 10.5061/dryad.2435k/13
title: Dryad LOCAL Borrows US70

description: Borrow Pits along US70 south of Broken Bow, Oklahoma
DOI: 10.5061/dryad.2435k/14
title: Dryad LOCAL Chigley Sandy Creek

description: Chigley Sandy Creek, Murray County, Oklahoma
DOI: 10.5061/dryad.2435k/15
title: Dryad LOCAL Choctaw 2 Local

description: Choctaw Creek, central Oklahoma
DOI: 10.5061/dryad.2435k/16
title: Dryad LOCAL Coal Creek 2005-2014

description: Coal Creek, Ottawa County, Oklahoma
DOI: 10.5061/dryad.2435k/17
title: Dryad LOCAL Cow Creek 2005-2014

description: Cow Creek, Ottawa County, Oklahoma
DOI: 10.5061/dryad.2435k/18
title: Dryad LOCAL Gar Creek 1 Local

description: Gar Creek, central Oklahoma
DOI: 10.5061/dryad.2435k/9
title: Dryad GLOBAL Roanoke 1978-1979

description: Roanoke River, Virginia
DOI: 10.5061/dryad.2kg70/6
title: 6_GMYC
DOI: 10.5061/dryad.3m774/1
title: Microsatellite data

description: Sample description, Sample name, microsatellite alleles for 2SG08, 2SG17, 2SG55x, 2SG13b and 2SG21 loci, reconstructed female ID and notes for parentage analyses of two spotted gobies.
DOI: 10.5061/dryad.488dk/10
title: summarySE

description: summarySE R function used to analyse data. Reproduced from http://www.cookbookr.com/Manipulating_data/Summarizing_data/
DOI: 10.5061/dryad.488dk/11
title: Halletal.SInb1

description: Mathematica Worksheet 1
DOI: 10.5061/dryad.488dk/3
title: Figure 2 Data (alpha and K estimation)

description: Comma separated values formatted file containing data used to estimate alpha1, alpha2, K1 and K2 (used to produce Figure 3 and SI Figures 1, 2 and 3). Columns as Figure1Data.csv, except time = time of sampling (h).
DOI: 10.5061/dryad.488dk/4
title: Figure 2 Data (beta estimation)

description: Comma separated values formatted file containing data used to estimate beta1 and beta2 (used to produce Figure 3 and SI Figures 1, 2 and 3). Columns as Figure1Data.csv, except mrk = marker of plasmid-bearing strain, start.gm.dens = starting density of Gm-labelled strain (cfu/g), start.sm.dens = starting density of Sm-labelled strain (cfu/g), end.gm.dens = final density of Gm-labelled strain (cfu/g), end.sm.dens = final density of Sm-labelled strain (cfu/g), fitness.w.gm = relative fitness W of Gm-labelled strain (calculated as described in SI Text).
DOI: 10.5061/dryad.488dk/5
title: Figure 2 Data (gamma estimation)

description: Comma separated values formatted file containing data used to estimate gamma11, gamma12, gamma21 and gamma22. Columns as Figure1Data.csv, except donor = donor species ('pf' or 'pp', codes as Figure1Data.csv), recipient = recipient species, type = description of conjugation experiment ('donor - recipient'), donor_marker = marker of plasmid donor, rate = log10 transformation of calculated conjugation rate gamma (Simonsen et al. (1990), J. Gen Microbiol 136:2319-2325).
DOI: 10.5061/dryad.488dk/6
title: Figure 3 Data

description: Comma separated values formatted file containing data presented in Figure 3 of the manuscript. Columns as Figure1Data.csv, except src.mrk = marker of source species, trt = treatment (source.sink), hgr = calculated density of mercury resistant cfu/g from replica plating colonies onto 100 µM Hg(II), tot = total density (cfu/g), src.snk = source or sink (src = source, snk = sink).
DOI: 10.5061/dryad.488dk/7
title: Figure 3 Data (endpoint)

description: Comma separated values formatted file containing data presented in Figure 3 of the manuscript. This table includes data obtained from spreading samples on KB agar containing mercury. As Figure3Data.csv except selection = selective agents in KB agar, spread = volume spread on plate (µl), dilution = log[10] dilution of sample spread on plate, count = number of colonies, total = calculated density.
DOI: 10.5061/dryad.488dk/8
title: Plasmid Dynamics (parameter estimation)

description: R code used to analyse the data presented, and selected output.
DOI: 10.5061/dryad.488dk/9
title: Plasmid Dynamics (analysis)

description: R code used to analyse the data presented, and selected output.
DOI: 10.5061/dryad.540bt/1
title: Mountain pine beetle genotype information

description: This file contains genotype information for mountain pine beetle individuals samples from 62 different sites across Canada and the USA.