cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5683/sp3/6u0xj8
title: Floral phenology of an Andean bellflower and pollination by Buff-tailed Sicklebill

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p class="MsoNormal"&gt;&lt;span lang="EN-US"&gt;The Andean bellflowers comprise an explosive radiation correlated with shifts to specialized pollination. One diverse clade has evolved with extremely curved floral tubes and are predicted to be pollinated exclusively by one of two parapatric species of Sicklebill hummingbirds (&lt;em&gt;Eutoxeres&lt;/em&gt;). In this study we focused on the floral biology of &lt;em&gt;Centropogon granulosus&lt;/em&gt;, a bellflower thought to be specialized for pollination by &lt;em&gt;E. condamini&lt;/em&gt;, in a montane cloud forest site in southeastern Peru. Using camera traps and a pollination exclusion experiment, we documented &lt;em&gt;E. condamini&lt;/em&gt; as the sole pollinator of &lt;em&gt;C.granulosus&lt;/em&gt;. Visitation by &lt;em&gt;E. condamini&lt;/em&gt; was necessary for fruit development. Flowering rates were unequivocally linear and conformed to the ‘steady state’ phenological type. Over the course of &gt;1800 hours of monitoring we recorded 12 &lt;em&gt;E. condamini&lt;/em&gt; visits totaling 42 seconds, indicating traplining behaviour. As predicted by its curved flowers, &lt;em&gt;C. granulosus&lt;/em&gt; is exclusively pollinated by Buff-tailed Sicklebill within our study area. We present evidence for the congruence of phenology and visitation as a driver of specialization in this highly diverse clade of Andean bellflowers.&lt;/span&gt;&lt;/p&gt;
description: &lt;b&gt;Methods&lt;/b&gt;&lt;br /&gt;&lt;p&gt;This data was collected at the Cock-of-the-Rock Lodge situated at ~1350 m a.s.l. in the Kosñipata Valley, Department of Cusco, Peru (-13.055, -71.548 DD). Data in the 'raw_data' folder is not processed, and was used as-is in the analysis. Please refer to the accompanying publication for a detailed description of the methods used to collect this data.&lt;/p&gt;
description: &lt;b&gt;Usage notes&lt;/b&gt;&lt;br /&gt;&lt;p&gt;This dataset was analysed via R scripts in the accompanying Zenodo repository. To run the .R files, we recommend first opening the .RProj file in RStudio and installing the package `here`. This will allow you to run all of the .R scripts without changing any of the working directories.&lt;/p&gt;
description: <b>Dryad version number:</b> 4
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> https://datadryad.org/stash/share/1pg9ZoUfEE_XiyZ6lDBMmSve90cE7MBz7NMc4B_fRQ8
<b>Storage size:</b> 27084707
<b>Visibility:</b> public
DOI: 10.5683/sp3/vapxll
title: Search Strategy replication data for "Association of SARS-CoV-2 Infection with Neurological Symptoms and Neuroimaging Manifestations in the Pediatric Population: A Systematic Review"

description: The files in this dataset contains the full MEDLINE (Ovid), Embase (Ovid), PsycInfo (Ovid), CINAHL (EBSCO), AMED (Ovid), Cochrane Central, Scopus, and Global Index Medicus search strategies for covid-19, pediatrics, brain imaging, and brain structure/function. Original search date: (2021-12-22); Last run: (2022-03-15)
Another file includes the grey literature search strategy conducted. There is a separate file for the Peer Review of Electronic Search Strategies (PRESS) form.
DOI: 10.5683/sp3/omfzuw
title: Guidewire

description: Radiographs contain only guidewires as the retained foreign objects. Guidewires mainly occur in areas within close proximity to the chest and abdomen.
DOI: 10.5683/sp3/sz1odb
title: Retractor

description: Radiographs contain only retractors as the retained foreign objects. All retractors occur in the patients' abdomens.
DOI: 10.5683/sp3/7samqg
title: Pad

description: Radiographs contain only surgical pads as the retained foreign objects. Pads only occur in the patients' abdomens.
DOI: 10.5683/sp3/cbwhcv
title: Unidentified RFOs

description: Radiographs contain different types of RFOs. However, the specific types of RFOs in the radiographs and the URLs of the radiographs cannot be identified and obtained due to a lack of information and technological limitation. The radiographs in this dataset were downloaded through a python WebCrawler program designed by the team.
DOI: 10.5683/sp3/ect6l6
title: Data for Strong relationships between urbanization, landscape structure, and ecosystem service multifunctionality in urban forest fragments

description: Data on multiple ecosystem services provided by 21 forest fragments along an urban-to-rural gradient in Maple Ridge, British Columbia, Canada.
DOI: 10.5683/sp3/m0vo8n
title: Paravertebral vs. Epidural Analgesia for Liver Surgery (PEALS): protocol for a randomized controlled pilot study
title: PEALS

description: Perioperative thoracic epidural analgesia (TEA) is commonly used in hepatectomy patients since it is opioid-sparing and reduces cardiorespiratory complications. However, TEA has a high failure rate and is associated with potentially devastating complications (particularly spinal hematoma) and the risk is increased with hepatectomy. Thus, some centres favour systemic opioid-based modalities which, in turn, are associated with inferior analgesia and well-known risks/side-effects. Hence, alternative analgesic methods are desirable. Paravertebral block (PVB) has been used in liver resection with advantages including hemodynamic stability, low failure rates, and low risk of spinal hematoma. Our purpose is to conduct a blinded, pilot RCT with hepatectomy patients randomized to receive TEA or PVB for perioperative analgesia.
DOI: 10.5683/sp3/aibagi
title: Data for the paper entitled "Impact of organic matter of different origins on lanthanum speciation, bioavailability and toxicity toward a green alga".

description: This dataset includes measured total lanthanum concentrations and ultrafiltrable lanthanum concentrations in the presence and absence of natural organic matter. The amount of lanthanum taken up by the unicellular green alga Chlorella fusca as well as the 96-h growth inhibition are also provided.
DOI: 10.5683/sp3/vouuyo
title: Diagnosing Intramammary Infection: Meta-analysis and Mapping Review on Frequency and Udder Health Relevance of Microorganism Species Retrieved in Bovine Milk Samples

description: This is the supplementary materials, including the results from the meta-analyses for a peer reviewed article titled: Diagnosing Intramammary Infection: Meta-analysis and Mapping Review on Frequency and Udder-health Relevance of Microorganism Species Retrieved in Bovine Milk Samples
DOI: 10.5683/sp3/xlo82h
title: Replication data for: Canyon downwelling and water mass influences on winter zooplankton distributions in the coastal Northeast Pacific

description: Processed and quality controlled CTD, oxygen, and echosounder data along with other flight parameters from three underwater gliders from a 2017 deployment around Clayoquot Canyon.
DOI: 10.5683/sp3/p5kwyn
title: Supplementary materials for: A focus group study investigating Ontario dairy farmers' attitudes toward and perspectives of cull cow management

description: This study aimed to use focus groups to understand the motivations, perspectives, and sources of influence for dairy farmers to make culling decisions and complete management practices for these cows. A secondary objective was to explore farmers management of potential cull cows from described scenarios.
description: NVivo
DOI: 10.5683/sp3/gxyzku
title: Modelling the terrestrial nitrogen and phosphorus cycle in the UVic ESCM

description: Update files for N & P version of the University of Victoria Earth System Climate Model.
DOI: 10.5683/sp3/iutdkl
title: Employers & Newcomer Workforce Integration - Research Report

description: Employers & Newcomer Workforce Integration - Research Report
DOI: 10.5683/sp3/6ocrhr
title: Replication Data for "Brood sex ratios in Merlins reflect characteristics of the associated breeding male and population density"

description: Data collected during a 26 year study of Merlins (Falco columbarius) in the city of Saskatoon Saskatchewan Canada (52°07’ N, 106°38’ W) from 1971 through 1996.
DOI: 10.5683/sp3/plutej
title: Pleiotropic opposing dominance within a color gene block contributes to a nascent species boundary via its influence on hybrid male territorial behavior

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;The divergence of plumage color genes contributes to songbird radiation. However, the mechanisms by which color gene divergence counteracts gene flow to maintain reproductive isolation during the formation of new species boundaries remain elusive. The hybrid zone between Setophaga occidentalis (SOCC) and S. townsendi (STOW) in the Cascade Range provides a natural observatory to investigate potential behavioral mechanisms underlying divergent selection on color genes. Recently, we found that selection within a single gene block associated with plumage color variation has maintained a stable and narrow hybrid zone. Here, we investigated the potential role of plumage signals in moderating a behavioral mechanism of selection. Specifically, we assessed whether two plumage traits are associated with body size among breeding males and if trait mismatch predicted aggressive behavior within hybrid and parental individuals in response to simulated territorial intrusion. The two plumage signals, cheek and flank coloration, though associated with the same gene block, reflect opposing dominance of SOCC and STOW alleles. We found that both plumage traits significantly predict the body size in the territorial sex (i.e. males). The opposing dominance of the single color gene block resulted in plumage signal discordance in heterozygotes, which in turn was associated with reduced hybrid territorial performance, an important proxy of fitness in this system. Taken together, these observations point to a single-locus-two-alleles mechanism of incompatibility in shaping a natural species boundary in the early stage of speciation.&lt;/p&gt;
description: <b>Dryad version number:</b> 8
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> https://datadryad.org/stash/share/l3SfAuWer9Rjv80Lz-QmZj6h9xFG2HcmcilsUqbV6vE
<b>Storage size:</b> 182611
<b>Visibility:</b> public
DOI: 10.5683/sp3/yju5ml
title: Replication Data for: The effect of placement and group size on the use of a mechanical brush by groups of lactating dairy cattle

description: Mechanical brushes are often provided on dairy farms to facilitate grooming. However, current brush designs do not provide data on their use and little is known about the effects of group size and placement of brushes within the pen. The objectives of this study were to automatically detect brush use in cow groups and investigate the influence of (1) group size and the corresponding cow-to-brush ratio and (2) brush placement in relation to the lying stalls and the feeding and drinking areas. We measured brush use in groups of 60, 48, 36, and 24 cows with the brush placed either in the alley adjacent to the feed bunk and water trough or in the back alley. Cows used the brush longer when placed in the feed/water alley compared to when placed in the back alley. Average brush use per cow increased when cows were housed in smaller groups but the brush was never in use more than 50% of the day regardless of group size. We conclude that brush use in-creases when availability is increased and when the brush is placed closer to feed and water.
description: R, 4.2.0
DOI: 10.5683/sp3/c4uqcw
title: Insole sensor data for foot gestures

description: Laboratoire d'Automatique et de Robotique interactive, Université du Québec à Chicoutimi, Québec, Canada
LAR.i - UQAC, 16 août 2022

&lt;br&gt;This dataset presents sensor's signal acquired for foot gesture recognition.&lt;/br&gt; 

&lt;br&gt;This dataset was created after an ethic approbation (Research Ethic Board) at UQAC under the number 2022-837.&lt;/br&gt; 

&lt;br&gt;The dataset is composed of 5 participants. For each participant, a set of 11 classes is presented. For each classes, one .csv files are included and are composed of 13 column. Each colum refers to a signal acquisition described in the following list : &lt;/br&gt;

&lt;br&gt;gesture_participant_X_GY etZ.tab
&lt;li&gt;X: Participant Identification&lt;/li&gt;
&lt;li&gt;Y: Gesture number&lt;/li&gt;
&lt;li&gt;Z: Trial number&lt;/li&gt;
&lt;/br&gt;

See gesture dictionary (type and description) in:
&lt;br&gt;
Tchane Djogdom, G.V., Otis, M.JD. & Meziane, R. Dynamic time warping–based feature selection method for foot gesture cobot operation mode selection. Int J Adv Manuf Technol 126, 4521–4541 (2023). https://doi.org/10.1007/s00170-023-11280-w
&lt;/br&gt;

&lt;br&gt;
See video (real time application): Sharing_pHRI_iCDPM_RamyMeziane.mp4
&lt;/br&gt;

&lt;br&gt;Gesture crushing a cigarette (8 participants):
&lt;li&gt;Part X et Z.mat&lt;/li&gt;
&lt;li&gt;X: Participant identification&lt;/li&gt;
&lt;li&gt;Z: Trial number&lt;/li&gt;
&lt;/br&gt;

&lt;br&gt;
&lt;ol&gt;
&lt;li&gt;AccX -------- Accelaration on X axis&lt;/li&gt;
&lt;li&gt;AccY -------- Accelaration on Y axis&lt;/li&gt;
&lt;li&gt;AccZ -------- Accelaration on Z axis&lt;/li&gt;
&lt;li&gt;P -------- Euler angle Pitch&lt;/li&gt;
&lt;li&gt;R -------- Euler angle Roll&lt;/li&gt;
&lt;li&gt;Y -------- Euler angle Yaw&lt;/li&gt;
&lt;li&gt;FSR1 -------- Force sensor in forefoot (left side)&lt;/li&gt;
&lt;li&gt;FSR2 -------- Force sensor in forefoot (right side)&lt;/li&gt;
&lt;li&gt;FSR3 -------- Force sensor in heel or rearfoot (left side)&lt;/li&gt;
&lt;li&gt;FSR4 -------- Force sensor in heel or rearfoot (right side)&lt;/li&gt;
&lt;li&gt;GyX -------- Gyroscope on X axis&lt;/li&gt;
&lt;li&gt;GyY -------- Gyroscope on Y axis&lt;/li&gt;
&lt;li&gt;GyZ -------- Gyroscope on Z axis&lt;/li&gt;
&lt;/ol&gt;
&lt;/br&gt;
DOI: 10.5683/sp3/a6silr
title: Evaluating models for classifying movement of whale-watching vessels data

description: Automatic Identification System (AIS) marine vessel data used in partial completion of Andrea Nesdoly's Master of Science in Geography thesis titled: Modelling Marine Vessels Engaged in Wildlife-viewing Behaviour using Automatic Identification Systems (AIS). 

The data in this repository includes cleaned AIS data for a marine vessel stationed out of the Victoria Harbour, all unique vessel identifiers have been removed, and the results of various classification models for model comparison.

These data were collected for the Whale-watching AIS vessel movement evaluation (WAVE) project through the CORAL group at the University of Victoria, and provided by Ocean Networks Canada and the Canadian Coast Guard, and University of Victoria graduate Molly Fraser (2021).
DOI: 10.5683/sp3/y5nknt
title: The effect of air purifiers and curtains on aerosol dispersion and removal in multi-patient hospital rooms
title: Supporting data
title: Delta Hospital Air Purifier Study

description: &lt;p&gt;
Airborne transmission of disease is of concern in many indoor spaces. Here, aerosol dispersion and removal in an unoccupied 4-bed hospital room was characterized using a transient aerosol tracer experiment for 38 experiments covering 4 configurations of air purifiers and 3 configurations of curtains. NaCl particle (mass mean aerodynamic diameter ∼3μm) concentrations were measured around the room following an aerosol release. Particle transport across the room was 1.5 - 4 minutes which overlaps with the characteristic times for significant viral deactivation and gravitational settling of larger particles. Concentrations were close to spatially uniform except very near the source. Short curtains had no consistent effects on concentrations at the non-source patient locations while floor-length curtains reduced concentrations slightly depending on the purifier configuration. The aerosol decay rate was in most cases higher than expected from the clean air delivery rate, but the reduction in steady-state concentrations resulting from air purifiers was less than suggested by the decay rates. Apparently a substantial (and configuration-dependent) fraction of the aerosol is removed immediately and this effect is not captured by the decay rate. Overall, the combination of curtains and purifiers is likely to reduce disease transmission in multipatient hospital rooms. 
&lt;/p&gt;
description: Raw data and matlab analysis scripts for NaCl tracer aerosol experiments.


Supporting text, author list and dates of collection at https://arxiv.org/abs/2105.12731
DOI: 10.5683/sp3/wnukgm
title: Interactions between Sitka alder and lodgepole pine in the BC central interior

description: This dataset consists of files containing measurements of lodgepole pine and Sitka alder, pine foliage chemistry, and soil properties collected in 2020 and earlier for a silvicultural experiment conducted jointly by Paul Sanborn (UNBC) and research staff of the BC Ministry of Forests. The study was initiated in 1994 and treatments were implemented in 1995 at a site approximately 60 km southwest of Prince George. 

The project is identified as Experimental Project (EP) 1185 of the Ministry of Forests, which has a duplicate backup of these data files in its own archiving system.
description: Full descriptions of the treatments and data collection methods are given in the cited publications.

The pdf file has descriptions of the individual data files, including identification of variables.
DOI: 10.5683/sp3/bd9amb
title: Replication Data for: Nutrition in Disguise: Effects of Food Neophobia, Healthy Eating Interests and Provision of Health Information on Liking and Perceptions of Nutrient-Dense Foods in Older Adults

description: The primary objective of this study was to investigate the liking and sensory perceptions of ten nutrient-dense foods tailored for older adults to determine their feasibility for improving the nutrient quality of older adults’ diets. A second objective was to observe the impacts of food neophobia and healthy eating interest segmentation on liking scores and perceptions of the foods. The final objective was to examine the influence of health information on sensory evaluations for both the overall participant sample and the food neophobia and healthy eating interest segmented groups.
DOI: 10.5683/sp3/rgpi9r
title: Sediment resuspension and transport by fission of nonlinear internal waves over a mild slope

description: This dataset includes ADVP collected data for the runs presented in the paper: Sediment resuspension and transport by fission of nonlinear internal waves over a mild slope.
DOI: 10.5683/sp3/xlbjqx
title: Data for: Phenotypic extremes or extreme phenotypes? On the use of large and small-bodied 'phenocopied' Drosophila melanogaster males in studies of sexual selection and conflict

description: In the fruit fly, &lt;i&gt;Drosophila melanogaster&lt;/i&gt;, variation in body size is influenced by a number of different factors and may be strongly associated with individual condition, performance and success in reproductive competitions. Consequently, intra-sexual variation in size in this model species has been frequently explored in order to better understand how sexual selection and sexual conflict may operate and shape evolutionary trajectories. However, measuring individual flies can often be logistically complicated and inefficient, which can result in limited sample sizes. Instead, many experiments use large and/or small body sizes that are created by manipulating the developmental conditions experienced during the larval stages, resulting in “phenocopied” flies whose phenotypes resemble what is seen at the extremes of a population’s size distribution. While this practice is fairly common, there has been remarkedly few direct tests to empirically compare the behaviour or performance of phenocopied flies to similarly-sized individuals that grew up under typical developmental conditions. Contrary to assumptions that phenocopied flies are reasonable approximations, we found that both large and small-bodied phenocopied males frequently differed from their standard development equivalents in their mating frequencies, their lifetime reproductive successes, and in their effects on the fecundity of the females they interacted with. Our results highlight the complicated contributions of environment and genotype to the expression of body size phenotypes and lead us to strongly urge caution in the interpretation of studies solely replying upon phenocopied individuals.
 
 The datasets archived here contain the observations on mating rates and offpring production that were obtained in our two experiments.
DOI: 10.5683/sp3/sigtun
title: Supporting information for "HormonomicsDB: A novel workflow for the untargeted analysis of plant growth regulators and hormones"

description: Metabolomics allows for the simultaneous determination of all metabolites in a
system. Despite significant advances in the field, compound identification remains a
challenge. Prior knowledge of the compound classes of interest which are appropriate
to a system can help to can help to improve metabolite identification. Hormones are a
small signaling molecules, which function in coordination to direct all aspects of
development, function and reproduction in living systems and which also pose challenges as environmental contaminants. By nature of their function, hormones are
present at low levels in tissues, stored in many forms and mobilized rapidly in response
to a stimulus making them difficult to measure, identify and quantify. Hormonomics is
a new method for identification of all known and predicted hormones, their precursors,
storage forms and metabolites in a biological system. We developed HormonomicsDB a tool which can be used to query an untargeted mass spectrometry (MS) dataset against a database of more than 200 known hormones, their precursors and metabolites. The protocol encompasses sample preparation, analysis, and data processing and is designed to minimize degradation of labile hormones. The plant system is used a model to illustrate the workflow and data acquisition and interpretation. Analytical conditions were standardized to a 30 min analysis time using a common solvent system to allow for easy transfer by a researcher with basic knowledge of MS. Incorporation of synthetic biotransformations algorithms allows for prediction of novel metabolites and conjugates. We performed a meta-analysis of 14 liquid chromatography-MS plant metabolomics studies using our HormonomicsDB web-tool. This protocol is suitable for use on any liquid chromatography-MS based system with compatible column and buffer system and enables the characterization of the known hormonome across a diversity of samples, as well as hypothesis generation to reveal knew insights into hormone signaling networks.

Contained in this repository is the supporting information for this publication, including the summary list of all hormones archived in HormonomicsDB, and information from the meta-analysis described in this publication.