cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18681611
title: Intravenous injection of lipid-free apolipoprotein A-I dampens inflammation by reprogramming macrophage function

description: BACKGROUND: High-density lipoproteins (HDL) and their main protein apolipoprotein A-I (apoA-I) have been implicated as immunomodulators. However, their precise effects on vascular and immune cells during tissue homeostasis and responses to danger signals are incompletely understood. Here, we show that apoA-I may dampen inflammation by modulating perivascular macrophage (PVM) function.

METHODS: In the present study, a combination of intravital microscopy, flow cytometry, experimental ex vivo models, and bulk RNA sequencing was used to study the immunomodulatory capacity of apoA-I. Representative mouse models of acute inflammation and chronic arthritis were used to determine how apoA-I in vivo affects target tissue inflammation under various inflammatory settings.

RESULTS: Using intravital imaging, we observed specific uptake of intravenously injected lipid-free apoA-I by dermal PVMs. Supraphysiological doses of apoA-I altered key cellular pathways, directed by mTORC1 and IRF8 programs, in THP-1 derived macrophages. In LPS-induced cutaneous inflammation, pretreatment of mice with apoA-I resulted in enhanced fluid drainage from the dermis, decreased availability of inflammatory cues, and reduced immune cell trafficking in and out of the skin. Moreover, apoA-I reduced joint inflammation in human TNF-transgenic mice, a spontaneous model of polyarthritis that resembles rheumatoid arthritis (RA).

CONCLUSION: ApoA-I acts as an integrator of vascular–immune interactions by modulating macrophage function in the vicinity of blood vessels. These findings open avenues for HDL-targeting strategies in a broad spectrum of autoimmune disorders, including RA.
description: Illumina adaptors were trimmed from raw reads using Picard tools (GATK). Basic quality control of 50bp paired-end reads was performed with fastQC. Qualimap and fastqc-screen reports were screened for outlying samples in terms of multimapping reads, possible contaminations (rRNA, intronic RNA, eEcoli. etc.) and distribution of read coverage. Reads were then aligned to human genome build GRCh38 using STAR aligner with standard settings. Aligned reads were counted using the featureCounts function of Rsubread package. Resulting raw count matrix served as input for a limma-voom inspired differential expression analysis. We restricted the dataset to genes with at least 50 reads across all samples or a minimum number of reads per sample as determined by the edgeR “filterByExpr”function, followed by library size normalization of the dataset using the trimmed mean of M-values method.
DOI: 10.5281/zenodo.18681612
title: Intravenous injection of lipid-free apolipoprotein A-I dampens inflammation by reprogramming macrophage function

description: BACKGROUND: High-density lipoproteins (HDL) and their main protein apolipoprotein A-I (apoA-I) have been implicated as immunomodulators. However, their precise effects on vascular and immune cells during tissue homeostasis and responses to danger signals are incompletely understood. Here, we show that apoA-I may dampen inflammation by modulating perivascular macrophage (PVM) function.

METHODS: In the present study, a combination of intravital microscopy, flow cytometry, experimental ex vivo models, and bulk RNA sequencing was used to study the immunomodulatory capacity of apoA-I. Representative mouse models of acute inflammation and chronic arthritis were used to determine how apoA-I in vivo affects target tissue inflammation under various inflammatory settings.

RESULTS: Using intravital imaging, we observed specific uptake of intravenously injected lipid-free apoA-I by dermal PVMs. Supraphysiological doses of apoA-I altered key cellular pathways, directed by mTORC1 and IRF8 programs, in THP-1 derived macrophages. In LPS-induced cutaneous inflammation, pretreatment of mice with apoA-I resulted in enhanced fluid drainage from the dermis, decreased availability of inflammatory cues, and reduced immune cell trafficking in and out of the skin. Moreover, apoA-I reduced joint inflammation in human TNF-transgenic mice, a spontaneous model of polyarthritis that resembles rheumatoid arthritis (RA).

CONCLUSION: ApoA-I acts as an integrator of vascular–immune interactions by modulating macrophage function in the vicinity of blood vessels. These findings open avenues for HDL-targeting strategies in a broad spectrum of autoimmune disorders, including RA.
description: Illumina adaptors were trimmed from raw reads using Picard tools (GATK). Basic quality control of 50bp paired-end reads was performed with fastQC. Qualimap and fastqc-screen reports were screened for outlying samples in terms of multimapping reads, possible contaminations (rRNA, intronic RNA, eEcoli. etc.) and distribution of read coverage. Reads were then aligned to human genome build GRCh38 using STAR aligner with standard settings. Aligned reads were counted using the featureCounts function of Rsubread package. Resulting raw count matrix served as input for a limma-voom inspired differential expression analysis. We restricted the dataset to genes with at least 50 reads across all samples or a minimum number of reads per sample as determined by the edgeR “filterByExpr”function, followed by library size normalization of the dataset using the trimmed mean of M-values method.
DOI: 10.48580/dfkx.v194
title: National Checklist of all species occurring in Denmark
DOI: 10.48580/dgvjs.v12
title: Bird Checklist of Iran
DOI: 10.48580/dfxrb.v20
title: The FinBIF checklist of Finnish species
DOI: 10.15468/dl.6b2yxa
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Simothraulopsis demerara (Traver, 1947), Brasilocaenis irmleri Puthz, 1975)"
 ]
}

 The dataset includes 69 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036273-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tjqt27
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brasilocaenis irmleri Puthz, 1975"
 ]
}

 The dataset includes 13 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036271-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uuwqjg
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ulmeritoides flavopedes (Spieth, 1943)"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036281-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.71802/2pgwxklt
title: 2026_02_12 LA RICERCA NON VA IN GUERRA

description: L'evento si è proposto come momento di informazione, confronto e riflessione collettiva, per dare nuovo slancio a iniziative concrete, volte a contrastare la cultura e il sostegno alla guerra, rafforzando una ricerca orientata ai principi di pace e giustizia fra i popoli. L'organizzazione ha coinvolto decine di colleghe e colleghi in 15 sedi CNR in Italia.
DOI: 10.15468/dl.d989yb
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((104.18544 70.76905,142.59349 70.76905,142.59349 89.75435,104.18544 89.75435,104.18544 70.76905))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Metridia longa"
 ]
}

 The dataset's 1 records were derived from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027235-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.umg39s
title: Occurrence Download

description: A dataset containing 39189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ambrosia artemisiifolia",
 "Continent is Europe",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 100",
 "Year is greater than or equal to 1970",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Material citation"
 ]
 }
 }
 ]
}

 The dataset includes 39189 records from 153 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027259-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4h6bjt
title: Occurrence Download

description: A dataset containing 32505 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lysimachia arvensis",
 "Continent is Europe",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 100",
 "Year is greater than or equal to 1970",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Material citation"
 ]
 }
 }
 ]
}

 The dataset includes 32505 records from 264 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027260-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31362192
title: Associations of systemic inflammatory markers with cancer survival outcomes: a systematic umbrella review

description: The systemic immune-inflammation index (SII) and systemic inflammation response index (SIRI) have been associated with poor cancer outcomes; however, no comprehensive evaluation across various cancer types has been conducted. To assess the impact of SII/SIRI on survival outcomes in cancer patients. Meta-analyses up to May 10, 2025 were retrieved. Pooled hazard ratios were calculated using random-effects models, and evidence quality was evaluated with AMSTAR 2 and Ioannidis criteria. Seventy-four meta-analyses were included. Elevated SIRI was significantly associated with worse overall survival (HR=1.98), supported by Class I evidence. High SII was also linked to poor prognosis across multiple cancers, with consistent subgroup results. SII and SIRI are reliable prognostic biomarkers across cancers and may aid clinical decision-making.
DOI: 10.6084/m9.figshare.31362192.v1
title: Associations of systemic inflammatory markers with cancer survival outcomes: a systematic umbrella review

description: The systemic immune-inflammation index (SII) and systemic inflammation response index (SIRI) have been associated with poor cancer outcomes; however, no comprehensive evaluation across various cancer types has been conducted. To assess the impact of SII/SIRI on survival outcomes in cancer patients. Meta-analyses up to May 10, 2025 were retrieved. Pooled hazard ratios were calculated using random-effects models, and evidence quality was evaluated with AMSTAR 2 and Ioannidis criteria. Seventy-four meta-analyses were included. Elevated SIRI was significantly associated with worse overall survival (HR=1.98), supported by Class I evidence. High SII was also linked to poor prognosis across multiple cancers, with consistent subgroup results. SII and SIRI are reliable prognostic biomarkers across cancers and may aid clinical decision-making.
DOI: 10.82574/1q65-ga63
title: Verhältnis von individuellen und gemeinsamen Überzeugungen in deutschsprachigen Freikirchen der Schweiz 2024
title: Relationship between individual and shared beliefs in German-speaking free churches in Switzerland 2024
DOI: 10.82574/gkkz-t441
title: Verhältnis von individuellen und gemeinsamen Überzeugungen in deutschsprachigen Freikirchen der Schweiz 2024
title: Relationship between individual and shared beliefs in German-speaking free churches in Switzerland 2024
DOI: 10.5281/zenodo.18681650
title: Thermographic data for manuscript Mus.3356-P-513,1 (SLUB)

description: This data set contains thermographic images for the visualisation of watermarks. An IRCAM Equus 327k with Watermark Imager software (Fraunhofer) version 8.416 (R2016b) was used.
DOI: 10.5281/zenodo.18681651
title: Thermographic data for manuscript Mus.3356-P-513,1 (SLUB)

description: This data set contains thermographic images for the visualisation of watermarks. An IRCAM Equus 327k with Watermark Imager software (Fraunhofer) version 8.416 (R2016b) was used.
DOI: 10.57996/cran.ceres-2817
title: Dataset: Cladding fragment impact prediction using material properties

description: Terrorist attacks involving improvised explosive devices (IEDs) have more recently included fragmentation such as nuts, bolts and ball bearings. Under theTerrorism (Protection of Premises) Act 2025, building owners must incorporate public protection procedures and to do so correctly they must understand how the building would perform against an attack. As more external cladding products come onto the market ranging from ceramics and timber products tofibre cement boards and high-pressure laminates, there is a risk that not all cladding will protect occupants from blast driven fragmentation. This research assesses the suitability of standard laboratory material tests to predict the V50 ballistic limit, a measure of penetration resistance. Plastic impact testing wasnot suitable for the full set of materials, flexural strength showed moderate correlation and two types of hardness testing Mohs and Shore D were the most accurate predicters when combined with material groupings (ceramic, fibrous and non-fibrous). A validation exercise with seven additional non-ceramic products demonstrated Shore D prediction errors of up to 26%. This supports the potential utility of the simple test for comparing and estimating penetration resistance of external cladding products. It is recommended that further testing on a wider variety of materials is completed to build the dataset and refine the regression equations.
DOI: 10.15468/dl.ymc7da
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Magnolia polyhypsophylla"
 ]
}

 The dataset includes 49 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027263-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18361232
title: Population Data and Demographic Vulnerability Index – NUTS3 Level (ELSTAT, 2023)

description: Population data for 2023 obtained from ELSTAT at NUTS3 level, including total and age-disaggregated population (0–14, 15–64, 65+). A demographic vulnerability index was constructed as (children + elderly) / total population per region. Outputs include intermediate processing files and final normalized vulnerability rasters used in the wildfire risk workflow.
DOI: 10.5281/zenodo.18361231
title: Population Data and Demographic Vulnerability Index – NUTS3 Level (ELSTAT, 2023)

description: Population data for 2023 obtained from ELSTAT at NUTS3 level, including total and age-disaggregated population (0–14, 15–64, 65+). A demographic vulnerability index was constructed as (children + elderly) / total population per region. Outputs include intermediate processing files and final normalized vulnerability rasters used in the wildfire risk workflow.
DOI: 10.15468/dl.drnvbx
title: Occurrence Download

description: A dataset containing 308 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is bd42f57d-c7c2-4b59-a12c-550e01b2ebcc"
 ]
}

 The dataset includes 308 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000002-260129131029165/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ew7mmr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lepidoptera",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025",
 "Month is one of (April, May, June, July, August, September)",
 "HasCoordinate is true",
 "Geometry GEOMETRYCOLLECTION EMPTY",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027188-260208012135463/datasets/export for details.
DOI: 10.15468/dl.qr877z
title: Occurrence Download

description: A dataset containing 31244 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anchusa officinalis",
 "Continent is Europe",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 100",
 "Year is greater than or equal to 1970",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Material citation"
 ]
 }
 }
 ]
}

 The dataset includes 31244 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027264-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60893/figshare.apl.31229584
title: Supplementary Information

description: detailed description of this study
DOI: 10.60893/figshare.apl.31229584.v1
title: Supplementary Information

description: detailed description of this study
DOI: 10.5281/zenodo.18352459
title: Heatwave risk output
DOI: 10.60893/figshare.apl.31132456
title: Supplement Number 1

description: Details on experimental and material characterization
DOI: 10.60893/figshare.apl.31132456.v1
title: Supplement Number 1

description: Details on experimental and material characterization
DOI: 10.5281/zenodo.18136140
title: Confusion, Humor, and Attribution: A Micro-Dataset of Audience Sensemaking Responses to Non-Instructional AI Media

description: This dataset documents a short sequence of public audience responses to experimental AI-adjacent media on YouTube, captured as three timestamped screenshots of comment threads. The comments exhibit recurring sensemaking strategies—expressions of confusion, humor, attribution to altered mental states, and conversational collapse—when viewers encounter content that resists clear genre classification or explanatory framing. Rather than treating such responses as noise, the dataset preserves them as ethnographic artifacts illustrating how platform users manage interpretive uncertainty in public settings. The author’s minimal, non-corrective replies are included as part of the interactional context. The dataset is intended for researchers studying digital ethnography, AI discourse, online sensemaking, and the social dynamics of ambiguity in algorithmic media environments.
DOI: 10.60893/figshare.apl.31230799
title: Supplementary Material

description: Supplementary Material with additional XRD
DOI: 10.60893/figshare.apl.31230799.v1
title: Supplementary Material

description: Supplementary Material with additional XRD
DOI: 10.5281/zenodo.18143327
title: Recursive Engagement After Disclosure A Longitudinal Human Control Case Under Semantic Austerity Conditions (Single Image Artifact)

description: This dataset consists of a single image documenting a post-publication continuation of engagement behavior by the same human participant analyzed in The Engagement Trap: How Humans and AI React to Online Boredom.

The image captures a YouTube comment made after the participant’s behavior had already been explicitly framed, archived, and DOI-registered as part of a digital ethnographic study. Despite this disclosure, the participant continues engagement through ironic dismissal and explicit metric enumeration, reinforcing the original findings.

This artifact functions as a within-subject longitudinal human control case under Semantic Austerity Testing (SAT) conditions. It demonstrates that awareness of algorithmic capture and research framing does not reliably restore disengagement or silence. Instead, engagement persists recursively, even when its futility and instrumental absorption are acknowledged.

By isolating this behavior into a single, timestamped visual artifact, the dataset preserves temporal clarity and evidentiary restraint while strengthening the comparative parallel between human participants and large language models subjected to the AI Boredom Test.
description: This single-image dataset is a post-publication longitudinal extension of the digital ethnographic study published as:



The Engagement Trap: How Humans and AI React to Online BoredomZenodo DOI: 10.5281/zenodo.18143278


The artifact documents continued engagement behavior by the same human participant after explicit disclosure that their prior interaction had been archived and DOI-registered. It is published as a separate record to preserve temporal ordering and prevent retroactive modification of the parent dataset.

This record should be read as a within-subject addendum that strengthens the original findings by demonstrating recursive engagement persistence under Semantic Austerity conditions, even when the governing dynamics are made explicit to the participant.
DOI: 10.5517/ccdc.csd.cc2n27bb
title: CCDC 2445011: Experimental Crystal Structure Determination

description: Related Article: Elena Catania, Marco Bazi, Luca Bellucci, Massimo Guelfi, Luca Labella, Maria Luisa Di Paolo, Federica Silvestri, Francesco Piazzola, Simona Samaritani, Lisa Dalla Via|2026|ChemMedChem|21|e202500654|doi:10.1002/cmdc.202500654
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.18140937
title: Proxy Figures and Semantic Swarms: A Two-Phase Digital Ethnography of Attention Convergence During Geopolitical Stress

description: This deposit contains a formal academic paper and an accompanying dataset of 21 ethnographic image specimens documenting a two-phase attention convergence phenomenon on the social media platform X (formerly Twitter).

The study analyzes how a highly visible political streamer became a stabilized symbolic proxy through which broader geopolitical anxieties, moral positioning, authenticity audits, and identity enforcement were negotiated during a period of global stress. Rather than evaluating the truth or falsity of claims made about any individual, the research focuses on how meaning, attention, and narrative roles evolve under conditions of uncertainty.

The dataset consists of timestamped screenshots captured in situ via keyword-anchored sampling and is organized into two analytical phases:





Phase I (Batch A): Immediate semantic convergence following geopolitical shocks




Phase II (Batch B): Narrative crystallization, identity fixation, and normalization of symbolic hostility



A supplemental single-image ethnograph illustrates the emergence of authenticity audits and audience-legitimacy contests within ideologically adjacent actors.

This work contributes to digital ethnography and platform studies by demonstrating how social media systems transform individuals into proxy figures that absorb collective anxiety, enabling rapid moral simplification during periods of institutional and geopolitical instability.