cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.mw6m90679
title: Data from: Molecular evolution of sour tolerance in birds

description: Taste is crucial in shaping animals’ perception. Sourness, one of the
 primary tastes, is aversive in mammals, whereas many birds frequently
 consume acidic fruits, suggesting a potential tolerance. Our study
 uncovers a mechanism enabling sour tolerance in birds involving changes to
 the sour receptor (Otopetrin1, OTOP1). We demonstrate sour tolerance is a
 conserved trait in birds, with avian OTOP1 exhibiting acid-induced
 inhibition, and OTOP1 modulation affects sour perception and tolerance.
 Ancestral reconstruction reveals that the increase in acid tolerance
 evolved at the same point in the songbird phylogeny--before the last
 common ancestor of honeyeaters and other songbirds, and after the
 divergence of Australian treecreepers--as the regain of sweet sensing in
 this clade. We propose this shift might have enabled songbirds to feed on
 a wider range of fruits, expanding their ecological niches, and may play a
 role in the evolution and diversification of the songbird
 radiation. 
description: 68 <em>Otop1</em> gene sequences (51 birds, 9
 non-avian reptiles and 8 mammals, Table S1) were downloaded from GenBank,
 or obtained from NCBI via basic local alignment search tool (BLAST) using
 canary and mouse <em>Otop1</em> genes as queries. Sequences
 were then aligned using MACSE (v11.05) with the MAFFT algorithm. Ancestral
 reconstruction was conducted with FastML (v3.11) using the yang model of
 codon evolution, the sequence alignment and a tree topology representing
 relationships within amniotes derived from published
 phylogenies.
description: # Alignment of the ancestral reconstruction OTOP1 sequences
 [https://doi.org/10.5061/dryad.mw6m90679](https://doi.org/10.5061/dryad.mw6m90679) ## Description of the data and file structure Codon alignment of the ancestral reconstruction OTOP1 sequences ### Files and variables # File: Alignment\_of\_the\_ancestral\_reconstruction\_OTOP1\_sequences.fasta **Description:**   Codon alignment of the ancestral reconstruction OTOP1 sequences, including 71 *Otop1* gene sequences (51 birds, 9 non-avian reptiles and 8 mammals, and 2 ancestors).
DOI: 10.5061/dryad.jq2bvq8md
title: Variation in root hair traits in 75 xerophytic species: Constraints of phylogeny, trait trade-offs and environment

description: Root hairs play an important role in the acquisition of soil resources by
 increasing absorptive surface area. Yet, key factors driving the variation
 of root hair traits across different species along biogeographic gradients
 are still poorly quantified, limiting our understanding of the functional
 relevance of root hairs. We measured root hair length, diameter and areal
 density of 75 xerophytic species across a 1000-km, latitudinal gradient in
 a dry valley system. The influences of phylogeny, environment, and
 fine-root morpho-anatomical traits on root hairs were quantified. We found
 that 95% of sampled species had root hairs, total absorptive root area
 increased by roughly 0.3% for species with very few roots hairs, and up to
 a 180% for species with large and dense root hairs. Phylogeny did not
 appear to be a significant factor influencing root hair traits. Root hair
 diameter and length were positively related to root diameter and cortex
 thickness, while root hair densities were negatively related with cortex
 thickness and root diameter. Across latitudes, mean annual precipitation
 (MAP) was the main factor driving the variations in root hairs as hair
 density generally increased with higher MAP. Synthesis: Root hairs were
 prevalent in native species in these arid ecosystems. Variation in root
 hair traits was more directly dependent on root traits rather than
 phylogeny across species. Climate was main driver of biogeographic
 patterns of root hair density. These results provide a more comprehensive
 understanding of the fine-root foraging strategies and the role of root
 hairs within the root economics space.
description: # Variation in root hair traits in 75 xerophytic species: Constraints of
 phylogeny, trait trade-offs and environment
 [https://doi.org/10.5061/dryad.jq2bvq8md](https://doi.org/10.5061/dryad.jq2bvq8md) ## Description of the data and file structure The mean values of root hair traits of 75 species were showed in first subtable RHL: root hair length (um); RHD: root hair diameter (um); RHdn: root hair number density (um); RHds: root hair surface area density (mm2. mm−2). Data at species-site level along latitudinal gradient was showed in second subtable , including environmental factors. MAT: Mean annual temperature (°C); MAP: mean annual precipitation (mm); AI: aridity index; DOC: dissolved organic carbon (mg/kg); TP: total soil phosphorus (g/kg); TIN: total inorganic nitrogen (mg/kg). Environmental factor data are incomplete (marked as 'null') because some samples were missing.
DOI: 10.6084/m9.figshare.6265493.v1
title: Patient11

description: Female Patient with 217 slice of pulmonary embolism CT-Angiography.
DOI: 10.6084/m9.figshare.13128926.v1
title: A curated dataset of modern and ancient high-coverage shotgun human genomes (filtered vcf)

description: Compressed filtered vcf file (no missing data and not tri-allelic sites) containing a curated dataset of modern and ancient high-coverage shotgun human genomes
DOI: 10.6084/m9.figshare.25607601.v1
title: <i>Solanum tuberosum</i> peel and root derived extracellular vesicles proteome

description: Extracellular vesicles (EVs) facilitate inter and intraspecies/kingdom communication through biomolecule transfer, including proteins and small RNAs. Characteristics and the physiological role of plant EVs is a recent hot topic in the EV field. In the current study, we purified and characterized vesicles from hydroponically cultivated potato plants (<i>isolating</i>, cv. Laura), isolating root exudates and apoplastic wash from potato peels via vacuum infiltration. Biophysical and chemical analyses unveiled morphological similarities between EVs from potato roots and peels. Diameter of EVs from potato roots (164.6±7.3 nm) were significantly larger than those from peels (132.2±2.0 nm, p = 0.0039). Liquid chromatography-mass spectrometry (LC-MS) showed substantial protein enrichment in purified EVs compared to crude samples from both sources. Only 11.8% of identified proteins were common, with merely 2% significantly enriched proteins shared between potato root and peel EVs. Pathways associated with responses to biotic and abiotic stress factors were significantly enriched in potato peel and root EV proteomes, hinting at a defensive role played by EVs. With further experimentation to elucidate the specific methods of communications, these findings promise to enhance our understanding of plant EVs, aiding in sustainable agricultural waste utilization for large-scale EV production, aligning with "valorization."
DOI: 10.6084/m9.figshare.25859560.v4
title: SIGMA+DetrendInSAR DEMOs

description: <b>SIGMA</b>, Strain-model based InSAR for Geo-hazards' Monitoring Approach[1], aims to decrease the decorrelation noise in DInSAR interograms based on strain model, and to obtain high-quality InSAR phase time series.<b>DetrendInSAR</b>, DEcrease both the TRENd and Dem-correlated components in InSAR time series[2], aims to decrease the atmospheric delays and orbital errors in InSAR phase time series (SIGMA output) based on the spatiotemporal characteristics of different components, and to obtain high-quality InSAR displacement time series.These two methods serve as the post-processing procedure for InSAR displacement measurement based on unfiltered DInSAR interferograms (generated using other popular software). All processes are conducted in Matlab software, and these two methods can be used independently.Here are some DEMO cases for users better understanding how the code works,Reference:[1] Liu, J., Hu, J., Bürgmann, R., Li, Z., Sun, Q., & Ma, Z. (2021). A Strain-Model Based InSAR Time Series Method and Its Application to The Geysers Geothermal Field, California. Journal of Geophysical Research: Solid Earth, 126(8), e2021JB021939. https://doi.org/10.1029/2021JB021939[2] Liu J., Hu J., Bürgmann R., Li Z., & Jónsson S. (2024). Mitigating Atmospheric Delays in InSAR Time Series: The DetrendInSAR Method and Its Validation. Journal of Geophysical Research: Solid Earth, 129, e2024JB028920. https://doi.org/10.1029/2024JB028920Please feel free to contact me for any questions, email: liujihong@csu.edu.cn (be sure introducing yourself in the email).
DOI: 10.17632/2mw6w556yg
title: Model to determine the risk of LE-ST injury in male youth soccer players

description: Model proposed in the study "A novel machine learning approach to determine the risk of lower extremity soft tissue injury in male youth soccer players".
DOI: 10.17632/kgb87k7863
title: A Dermatologic Manifestation of COVID-19: Transient Livedo Reticularis

description: Case 1: A 67-year-old Caucasian male was hospitalized for COVID-19 (nasopharyngeal swab PCR-confirmed) management. His symptoms began 10 days prior with low-grade fever, nasal congestion, post-nasal drip, and cough without shortness of breath. Seven days into his symptoms, he noted a transient non-pruritic blanching unilateral livedoid patch on the right anterior thigh resembling LR (Figure 1). The eruption lasted for 19 hours and resolved by the time dermatology evaluated the patient; thus no biopsy was taken. Concurrent with the lacy patches on the leg, the patient also noted gross hematuria and generalized weakness. In concert with the netlike exanthem, the hematuria resolved within 24 hours. He was eventually discharged home stable on supplemental oxygen. Case 2: A 47-year-old Caucasian female with history of Celiac disease, Hashimoto’s thyroiditis, and portal vein thrombosis in 2017 with negative work-up for a hypercoagulable state (attributed to a long plane flight combined with prior oral contraceptive) tested COVID-19-positive. Symptoms began with a mild headache, sinus pressure, anosmia, and fever, with highest recorded temperature of 37.9°C. Ten days after testing positive, and with complete clinical convalescence of COVID-19 symptoms, she was sitting outside in long pants under direct sunlight for approximately 20-30 minutes. A unilateral asymptomatic rash on her right leg resembling LR was noticed incidentally immediately upon moving indoors (Figure 2) despite an equal amount of sun exposure on both legs. The rash lasted approximately 20 minutes and did not recur upon re-challenge with sun exposure the following day. Discussion Livedo reticularis is caused by conditions, including disseminated intravascular coagulation (DIC), that reduce blood flow through the cutaneous microvasculature system leading to deoxygenated blood accumulation in the venous plexus.3 We hypothesize that the microthromboses that manifest in other organs (e.g. cardiopulmonary)4 and as DIC2,5 in critically ill COVID-19 patients are the most plausible etiology to our patients' LR presentations. We postulate that manifestations can vary from transient LR in mild-moderate cases to acrocyanosis in critically ill patients. Because our patients were not critically ill, perhaps they had transient low-grade DIC, and the concurrent hematuria in Patient 1 could be explained by a possible micro-embolic event causing glomerulonephritis or cystitis. However, due to the evanescent nature of their LR-like eruptions, they were not biopsied. Interestingly, exanthems have not been described for other coronaviruses such as SARS-CoV and MERS-CoV. In the future, histopathology of active exanthema may be helpful in elucidating the underlying pathology of the cutaneous and perhaps systemic manifestations of COVID-19 infection. Additionally, platelet count, coagulation studies, and fibrin degradation products assessments in these patients would be enlightening.
DOI: 10.6084/m9.figshare.1226041.v6
title: Presentations

description: Powerpoint slides from research presentations, starting in 2001.
DOI: 10.6084/m9.figshare.15156267.v1
title: Supplementary Material for: Use of the HAVOC Score to Identify Patients at Highest Risk of Developing Atrial Fibrillation

description: <b><i>Background:</i></b> Recent studies using insertable cardiac monitors (ICMs) show a high incidence of atrial fibrillation (AF). Further identifying subsets of patients who could benefit most from ICMs is desirable. We evaluated whether the HAVOC risk score which predicts AF in patients with cryptogenic stroke also predicts AF detection by ICMs in those without recent stroke. <b><i>Methods:</i></b> Participants were included from the prospective, industry-sponsored REVEAL AF study assessing AF incidence in patients with CHADS<sub>2</sub> scores ≥3 or =2 with 1 or more additional AF risk factors, who had ICM data and were not receiving anti-arrhythmic drugs. Ischemic stroke occurring less than 1 year prior to enrollment or documented AF were exclusion criteria. AF was defined as an adjudicated ICM-detected episode ≥6 min in duration. HAVOC scores were calculated by assigning 4 points for congestive heart failure, 2 points for each of hypertension, age ≥75 years, valvular disease, and coronary artery disease, and 1 point for each of peripheral vascular disease and obesity (body mass index &gt;30). Scores classified risk as low (0–4), intermediate (5–9), or high (10–14); corresponding AF detection rates were compared using the log-rank test. AF incidence rates in patients with and without a history of remote stroke at baseline were also compared. <b><i>Results:</i></b> Among 391 participants, the mean age was 71.5 ± 9.8 years and 186 (47.6%) were women. In total, 130 (33.2%) developed AF over 18 months. Stratification by HAVOC risk score was: 95 (24%) low, 241 (62%) intermediate, and 55 (14%) high. At 18 months, AF incidence in patients with low HAVOC scores (19.5%) was lower than in those with intermediate (32.1%) or high (34.2%) scores. AF incidence was similar among those with (<i>n</i> = 78) versus without (<i>n</i> = 313) remote stroke (27.3% vs. 29.8%; median time from stroke to ICM insertion was 4.2 [2.2–8.2] years). <b><i>Conclusions:</i></b> The HAVOC risk score identified a subset of individuals at greatest risk of developing AF, while AF incidence rates were similar among those with and without remote stroke. The use of the HAVOC score could help identify those at greatest likelihood of manifesting AF during long-term monitoring.
DOI: 10.6084/m9.figshare.5590852.v1
title: GRID release 2017-11-09

description: A database of over 80,000 research institutes with persistent identifiers.<br>New institutes added from:- Various sources from the United States, European Union, China and New Zealand<br>QA:- Review of funding programs in the database<br>Note: the geonames information is from geonames.org and licensed as CC-BY 3.0.
DOI: 10.60893/figshare.apl.28008686.v1
title: Electronic Supplementary Information

description: Electronic Supplementary Information
DOI: 10.6084/m9.figshare.17914088.v1
title: Code for analyzing the ECG records and dataset splitting

description: This file contains the python code for reading the ECG data, attributes and diagnostic code dictionary, evaluating the signal quality, and dataset splitting.
DOI: 10.6084/m9.figshare.28659989.v1
title: Casing Treatment Data

description: This work performs numerical investigations on effect of different casing treatments such as, triangular and rectangular slots on the performance of a transonic rotor, NASA Rotor 67.
DOI: 10.6084/m9.figshare.28853297.v1
title: Supplementary Material for: Protocol for the development of a Core Outcome Set for Inherited Ichthyosis (COSII)

description: Introduction
Inherited ichthyosis comprise a group of rare keratinization disorders caused by abnormal epidermal barrier function. Ichthyosis is yet incurable and current treatments mainly focus on alleviating symptoms such as scaling, erythema and pruritus. Recent developments show promising results for interventions based on the immune-phenotype like biologicals or pathogenesis-based therapies such as gene therapy. However, the lack of uniform reporting and variety of treatment outcomes may complicate performing and comparing efficacy studies. The core outcome set for inherited ichthyosis (COSII) aims to develop a core outcome set (COS), i.e. the minimum of outcomes that should be measured and reported in effectiveness research, including a minimum set of baseline characteristics. 

Methods 
The COSII project will follow the guidelines from the Core Outcome Measures in Effectiveness Trials (COMET) initiative including the Core Outcome Set-STAndards for Development (COS-STAD) recommendations and the Core Outcome Set Standardised Protocol (COS-STAP) checklist. The COS development methodology, including this protocol, follows guidance of the CHORD COUSIN Collaboration ‘C3’. The first stage of this project involves identifying a possible list of outcomes through performing a scoping literature review and conducting interviews with patient(s) (representatives). This list will be presented to five different stakeholders groups: healthcare professionals, researchers, patient(s) (representatives), industry representatives and regulators. All stakeholders will rate the importance of each outcome in a three-round eDelphi survey. Ultimately, a virtual consensus meeting will be convened to finalize the COS. Ethical approval was obtained prior to the start of this project from the Medical Ethics Committee board at Maastricht University Medical Centre (METC 2022-3192). Informed consent will be asked prior to enrolment in the eDelphi. This study is registered with the COMET. The results will be distributed via a peer-reviewed journal, communicated to all relevant parties and showcased at national and international conferences.

Conclusion
This will be the first COS for inherited ichthyosis research in accordance with the Core Outcome Measures in Effectiveness Trials initiative. The development of a COS aims to improve consistency of reporting and the heterogeneity of outcomes in ichthyosis research.
DOI: 10.6084/m9.figshare.5742132.v1
title: Raw data: The mechanism of short-term monocular deprivation is not simple: separate effects on parallel and cross-oriented dichoptic masking

description: Data for paper submitted to Scientific Reports:<i>The mechanism of short-term monocular deprivation is not simple: separate effects on parallel and cross-oriented dichoptic masking</i>
DOI: 10.6084/m9.figshare.6263972.v1
title: ASSESSMENT DALAM PENDIDIKAN ANAK USIA DINI

description: Abstrak Pendidikan merupakan suatu upaya untuk memanusiakan manusia. Artinya, melalui proses pendidikan diharapkan terlahir manusia-manusia yang baik. Standar manusia yang “baik” berbeda pada setiap masyarakat, bangsa atau negara. Hal tersebut disebabkan oleh perbedaan pandangan filsafah yang menjadi keyakinannya.Perbedaan filsafah yang dianut dari suatu bangsa akan membawaperbedaan dalam orientasi atau tujuan pendidikannya. Anak usia dini merupakan anak-anak yang berusia 0-8 tahun, di mana pada periode itu jiwa anak-anak masih bersifat utuh bulat atau total dan belum nampak diferensiasi tri sakti manusia yaitu pikiran, rasa dan kemauan. Pada masa kanak-kanak segala dorongan, nafsu diperlukan untuk memenuhi segala keinginannnya. Selain adanya kekuatan yang ada dalam jiwanya, anak-anak juga memiliki pancaindera yang merupakan sumber kekuatan untuk memasukkan alam luar ke dalam jiwanya . Penyusunan perencanaan, pelaksanaan proses, dan penilaian merupakan rangkaian program pendidikan yang utuh, dan merupakan satu kesatuan yang tidak bisa dipisahkan satu dengan yang lainnya. Dalam hal ini, penilaian dapat juga sebagai Assessment. Assessment dibuat untuk mengetahui kemajuan belajar anak dan sebagai teknik pelaporan. Assessment merupakan cara untuk memantau perkembangan belajar anak melalui pemantauan terus menerus dalam berbagai konteks dan berdasarkan apa yang dapat dekerjakan dan dihasilkan. <br>
DOI: 10.6084/m9.figshare.7180796.v1
title: Data of modeling NOx emission.xlsx

description: The data includes total 150 cases of modeling NOx emission <b> </b> for a coal-fired boiler, The first 23 variables are the input variables of the model, and the last variable is the model output variables.<b></b> <br>
DOI: 10.6084/m9.figshare.7237925.v1
title: Tracking Data Visuomotor Task GVS

description: Tracking data of participants performing visuomotor tracking task while receiving sham or pink noise GVS.<br>First column is the target trajectory, second column is user's data.
DOI: 10.6084/m9.figshare.27934938.v3
title: manta-tiny

description: manta-tiny
DOI: 10.6084/m9.figshare.28218101.v3
title: <b>A 0.1</b><b>° </b><b>gridded dataset of forest biological hazards in China from 1900 to 2000 based on integrated learning</b>

description: A gridded dataset of forest biohazard occurrence area in China at 0.1° resolution for the period of 1900-2000 with one period of 20 years and a total of six periods was generated by using superimposed integrated learning and geospatial data of longer time series and Chinese municipal forest biohazard statistics for the period of 2003-2017. Municipal FBHs statistics in China from 2003-2017 were first collected as the dependent variables for model inputs, and 10 proxy variables were used as the independent variables for model inputs. Subsequently, three machine learning algorithms (RF, XGBoost and LightGBM) were selected as the basic models to create and train the stacked integrated learning model. Then, 10 proxy variables for six years, namely 1900, 1920, 1940, 1960, 1980 and 2000, were introduced into the trained integrated learning model to generate a gridded forest biohazard occurrence area dataset (0.1° × 0.1°) for China from 1900 to 2000. Finally, we collected forest biohazard record points from historical literature and reports to compare with them, and the average incidence area grids of forest biohazards in China for the years 1900-1950 and 1950-2000 overlapped with the historical occurrence points by 81.82% and 83.33%, respectively.
DOI: 10.6084/m9.figshare.3833079.v1
title: Relationship between hair Colour and Gender

description: Methods: Participants from York University Ecology laboratory were used in the study. The experimenter collected the gender and hair colour of each participant via self-report. A gender binary of male and female was used. Hair colour was categorized as black, red, blonde, and brown.<br>Hypothesis: There will be a higher frequency of males with dark hair colours in the general population than females with dark hair colour. Evolutionary, the males who survived were those who were stronger and dominant, who could collect more resources. Males with darker hair colour were viewed as more attractive to females because it reflected their ability to acquire resources.<br>Predictions: I predict that in the laboratory the number of males with a dark hair colour will outnumber the number of females with a dark hair colour.<br><br>
DOI: 10.17632/3ygsm93gyc
title: SRI Testing Stage in Cyprus Dataset

description: The SRI test phase in Cyprus is led by the Ministry of Energy, Commerce and Industry. The technical work is undertaken by a cluster of four partners, consisting of Cyprus Energy Agency, Frederick University, CyRIC Ltd, and Euphyia Tech Ltd, all participating in LIFE projects. The dataset includes a representative sample of 20 buildings in Cyprus assessed using the Smart-Ready-Go tool, a cloud-based platform designed to evaluate SRI under EU specifications. The dataset provides the results, figures, final SRI reports for each case study, and the corresponding JSON file.
DOI: 10.17632/845wbjbhmg
title: Temporal and Spatial Variations and Genesis Models of Temporal and Spatial Variations and Genesis Models of Hydrogeochemical Characteristics in the Central Tianshan Mountains, China

description: Date of hydrogeochemical characteristics in the Central Tianshan Mountains, China