cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/105034
title: Expendable Probe data collected during research cruise MGLN46MV using a Sippican MK21 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105032
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGLN46MV using a Furuno GP-90D instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453685
title: Additional file 2 of Regulatory motifs found in the small heat shock protein (sHSP) gene family in tomato

description: Protein IDs and output tables after STRING analysis. Protein IDs induced under similar experimental conditions of heat stress in (1) WT tomato plants (where HsfA2 is present), (2) tomato protoplasts (where HsfA2 was inhibited using RNAi) and (3) WT Arabidopsis plants, were used as input for STRING analysis. Overlapping nodes corresponding to HSP70, HSP90, HSP100 and sHSPs families, are indicated in bold in the output tables. (XLSX 123 kb)
DOI: 10.6084/m9.figshare.7453685.v1
title: Additional file 2 of Regulatory motifs found in the small heat shock protein (sHSP) gene family in tomato

description: Protein IDs and output tables after STRING analysis. Protein IDs induced under similar experimental conditions of heat stress in (1) WT tomato plants (where HsfA2 is present), (2) tomato protoplasts (where HsfA2 was inhibited using RNAi) and (3) WT Arabidopsis plants, were used as input for STRING analysis. Overlapping nodes corresponding to HSP70, HSP90, HSP100 and sHSPs families, are indicated in bold in the output tables. (XLSX 123 kb)
DOI: 10.7284/105033
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGLN46MV using a Trimble NT-200D instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453679
title: Additional file 1 of Regulatory motifs found in the small heat shock protein (sHSP) gene family in tomato

description: HSFA1E and HSF21 TFBS associated to heat stress and ripening in tomato: building, quality controls and scanning for the promoter regions of sHSP gene family. (1) Gene IDs used to build HSFA1E and HSF21 PWMs. (2) Positive hits obtained with XXmotif tool. (3) PWM of the found TFBS in tomato and the corresponding known in Arabidopsis for heat stress (HSF1AE) and ripening (HSF21). (4) RSAT matrix-distrib output with theoretical distribution of weight scores (left) and corresponding decreasing cumulative distribution functions (right), for HSF1AE and HSF21 PWMs. (5) RSAT matrix-scan output table and location of the HSFA1E (red-squares) and HSF21 (blue-squares) motifs found in the promoter regions of 33 sHSPs in tomato. Differential sHSP gene expression during ripening according to [14] is indicated for up-regulation (UP), down-regulation (DOWN), not differentially expressed (NDE) and not expressed (NE) genes. (XLSX 137 kb)
DOI: 10.6084/m9.figshare.7453682
title: Additional file 9: of Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae

description: Table S6. Esi3/RCI2/PMP3 tissue-specific expression assayed by microarray analysis. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7453679.v1
title: Additional file 1 of Regulatory motifs found in the small heat shock protein (sHSP) gene family in tomato

description: HSFA1E and HSF21 TFBS associated to heat stress and ripening in tomato: building, quality controls and scanning for the promoter regions of sHSP gene family. (1) Gene IDs used to build HSFA1E and HSF21 PWMs. (2) Positive hits obtained with XXmotif tool. (3) PWM of the found TFBS in tomato and the corresponding known in Arabidopsis for heat stress (HSF1AE) and ripening (HSF21). (4) RSAT matrix-distrib output with theoretical distribution of weight scores (left) and corresponding decreasing cumulative distribution functions (right), for HSF1AE and HSF21 PWMs. (5) RSAT matrix-scan output table and location of the HSFA1E (red-squares) and HSF21 (blue-squares) motifs found in the promoter regions of 33 sHSPs in tomato. Differential sHSP gene expression during ripening according to [14] is indicated for up-regulation (UP), down-regulation (DOWN), not differentially expressed (NDE) and not expressed (NE) genes. (XLSX 137 kb)
DOI: 10.6084/m9.figshare.7453682.v1
title: Additional file 9: of Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae

description: Table S6. Esi3/RCI2/PMP3 tissue-specific expression assayed by microarray analysis. (XLSX 13 kb)
DOI: 10.7284/105040
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGLN46MV using a Ashtech ADU2 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453670
title: Additional file 6 of Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae

description: Table S4. Esi3/RCI2/PMP3 gene expression levels in five tissue types of T. aestivum. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.7453673
title: Additional file 7: of Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae

description: Table S5. Esi3/RCI2/PMP3 expression in T. aestivum in seventy-one tissue types. (XLSX 63 kb)
DOI: 10.6084/m9.figshare.7453673.v1
title: Additional file 7: of Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae

description: Table S5. Esi3/RCI2/PMP3 expression in T. aestivum in seventy-one tissue types. (XLSX 63 kb)
DOI: 10.7284/105036
title: Gravimeter data collected during research cruise MGLN46MV using a Bell BGM-3 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453670.v1
title: Additional file 6 of Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae

description: Table S4. Esi3/RCI2/PMP3 gene expression levels in five tissue types of T. aestivum. (XLSX 18 kb)
DOI: 10.7284/105039
title: Meteorological Station data collected during research cruise MGLN46MV using a SIO MET-System instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453655
title: Additional file 3: of Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae

description: Table S3. Esi3/RCI2/PMP3 gene family members in eight species with NCBI accession numbers and comparisons to Ensembl Plants annotations. (XLSX 15 kb)
DOI: 10.7284/105035
title: Multibeam Echosounder data collected during research cruise MGLN46MV using a Kongsberg EM120 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453649
title: Additional file 2: of Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae

description: Table S2. Sequence identity matrix for nucleic acid and amino acid sequences among members of the Esi3/RCI2/PMP3 gene family in Triticum aestivum. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.7453655.v1
title: Additional file 3: of Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae

description: Table S3. Esi3/RCI2/PMP3 gene family members in eight species with NCBI accession numbers and comparisons to Ensembl Plants annotations. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7453646
title: Additional file 1: of Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae

description: Table S1. Esi3/RCI2/PMP3 identifiers from Ensembl Plants and amino acid sequence comparison with current annotations of Triticum aestivum. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7453649.v1
title: Additional file 2: of Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae

description: Table S2. Sequence identity matrix for nucleic acid and amino acid sequences among members of the Esi3/RCI2/PMP3 gene family in Triticum aestivum. (XLSX 18 kb)
DOI: 10.7284/105038
title: Singlebeam Echosounder data collected during research cruise MGLN46MV using a Knudsen 320B/R instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453640
title: Additional file 6: of Enhancers in the Peril lincRNA locus regulate distant but not local genes

description: RNA seq analysis code - R markdown file containing all code used in the RNA-sequencing analysis. (RMD 15 kb)
DOI: 10.6084/m9.figshare.7453643
title: Additional file 17: of Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae

description: Table S12. Triticum aestivum RNA-seq datasets used to compare Esi3/RCI2/PMP3 gene expression levels. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7453646.v1
title: Additional file 1: of Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae

description: Table S1. Esi3/RCI2/PMP3 identifiers from Ensembl Plants and amino acid sequence comparison with current annotations of Triticum aestivum. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7453643.v1
title: Additional file 17: of Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae

description: Table S12. Triticum aestivum RNA-seq datasets used to compare Esi3/RCI2/PMP3 gene expression levels. (XLSX 15 kb)
DOI: 10.7284/101378
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise MV0902 using a Hawaii UHDAS instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453634
title: Additional file 5: of Enhancers in the Peril lincRNA locus regulate distant but not local genes

description: Mouse master sheet - File containing description of mice used in this study, and information about generation of RNA sequencing libraries. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.7453628
title: Additional file 4: of Enhancers in the Peril lincRNA locus regulate distant but not local genes

description: MPRA analysis code - R markdown file containing all code used in the MPRA analysis. (RMD 38 kb)
DOI: 10.6084/m9.figshare.7453634.v1
title: Additional file 5: of Enhancers in the Peril lincRNA locus regulate distant but not local genes

description: Mouse master sheet - File containing description of mice used in this study, and information about generation of RNA sequencing libraries. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.7453622
title: Additional file 14: of Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae

description: Table S11. Esi3/RCI2/PMP3 gene expression in wheat spikes in response to Fusarium graminearum inoculation. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.7453628.v1
title: Additional file 4: of Enhancers in the Peril lincRNA locus regulate distant but not local genes

description: MPRA analysis code - R markdown file containing all code used in the MPRA analysis. (RMD 38 kb)
DOI: 10.7284/102115
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise MV0902 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453622.v1
title: Additional file 14: of Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae

description: Table S11. Esi3/RCI2/PMP3 gene expression in wheat spikes in response to Fusarium graminearum inoculation. (XLSX 22 kb)
DOI: 10.7284/100588
title: Expendable Probe data collected during research cruise MV0902 using a Sippican MK21 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453613
title: Additional file 13: of Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae

description: Table S10. Esi3/RCI2/PMP3 gene expression in cold treated wheat seedlings. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7453613.v1
title: Additional file 13: of Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae

description: Table S10. Esi3/RCI2/PMP3 gene expression in cold treated wheat seedlings. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7453604
title: Additional file 1: of Enhancers in the Peril lincRNA locus regulate distant but not local genes

description: MPRA oligo annotation - File containing annotation information used to associate unique barcode tags to synthesized genomic elements in the MPRA experiment. (TXT 7035 kb)
DOI: 10.6084/m9.figshare.7453607
title: Additional file 12: of Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae

description: Table S9. Esi3/RCI2/PMP3 response to drought in the hexaploid Chinese Spring, the tetraploid Creso, and a Chinese Spring chromosome deletion line. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7453610
title: Additional file 2: of Enhancers in the Peril lincRNA locus regulate distant but not local genes

description: TSS annotation â File containing gencode TSS information for loci used in this study. (TXT 891 bytes)
DOI: 10.6084/m9.figshare.7453610.v1
title: Additional file 2: of Enhancers in the Peril lincRNA locus regulate distant but not local genes

description: TSS annotation â File containing gencode TSS information for loci used in this study. (TXT 891 bytes)
DOI: 10.7284/100589
title: GNSS (Global Navigation Satellite System) data collected during research cruise MV0902 using a Furuno GP-90D instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453604.v1
title: Additional file 1: of Enhancers in the Peril lincRNA locus regulate distant but not local genes

description: MPRA oligo annotation - File containing annotation information used to associate unique barcode tags to synthesized genomic elements in the MPRA experiment. (TXT 7035 kb)
DOI: 10.6084/m9.figshare.7453607.v1
title: Additional file 12: of Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae

description: Table S9. Esi3/RCI2/PMP3 response to drought in the hexaploid Chinese Spring, the tetraploid Creso, and a Chinese Spring chromosome deletion line. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7453595
title: Additional file 10: of Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae

description: Table S7. Esi3/RCI2/PMP3 gene expression in T. aestivum in response to drought and heat stress. (XLSX 15 kb)
DOI: 10.7284/100590
title: GNSS (Global Navigation Satellite System) data collected during research cruise MV0902 using a Trimble NT-200D instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453595.v1
title: Additional file 10: of Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae

description: Table S7. Esi3/RCI2/PMP3 gene expression in T. aestivum in response to drought and heat stress. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7453598
title: Additional file 11: of Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae

description: Table S8. Esi3/RCI2/PMP3 expression in response to drought in Cappelli, a water use efficient line, and Ofanto, a water use inefficient line of T. turgidum. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7453598.v1
title: Additional file 11: of Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae

description: Table S8. Esi3/RCI2/PMP3 expression in response to drought in Cappelli, a water use efficient line, and Ofanto, a water use inefficient line of T. turgidum. (XLSX 12 kb)
DOI: 10.7284/100591
title: GNSS (Global Navigation Satellite System) data collected during research cruise MV0902 using a Ashtech ADU2 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/100592
title: Gravimeter data collected during research cruise MV0902 using a Bell BGM-3 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/100593
title: Meteorological Station data collected during research cruise MV0902 using a SIO MET-System instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/100594
title: Multibeam Echosounder data collected during research cruise MV0902 using a Kongsberg EM120 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/100596
title: Singlebeam Echosounder data collected during research cruise MV0902 using a Knudsen 320B/R instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/101681
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise MV0903 using a Hawaii UHDAS instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102116
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise MV0903 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/100599
title: Expendable Probe data collected during research cruise MV0903 using a Sippican MK21 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453526
title: Additional file 2: of Structure, clustering and functional insights of repeats configurations in the upstream promoter region of the human coding genes

description: List of Repeat configurations in the upstream promoter region of the human genes, full list. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.7453520
title: Additional file 1: of Structure, clustering and functional insights of repeats configurations in the upstream promoter region of the human coding genes

description: List of genes with configurations of Repeats in the upstream promoter region of the human genes. (XLSX 321 kb)
DOI: 10.6084/m9.figshare.7453526.v1
title: Additional file 2: of Structure, clustering and functional insights of repeats configurations in the upstream promoter region of the human coding genes

description: List of Repeat configurations in the upstream promoter region of the human genes, full list. (XLSX 55 kb)
DOI: 10.7284/100600
title: GNSS (Global Navigation Satellite System) data collected during research cruise MV0903 using a Furuno GP-90D instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453520.v1
title: Additional file 1: of Structure, clustering and functional insights of repeats configurations in the upstream promoter region of the human coding genes

description: List of genes with configurations of Repeats in the upstream promoter region of the human genes. (XLSX 321 kb)
DOI: 10.7284/100601
title: GNSS (Global Navigation Satellite System) data collected during research cruise MV0903 using a Trimble NT-200D instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/100602
title: GNSS (Global Navigation Satellite System) data collected during research cruise MV0903 using a Ashtech ADU2 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/100603
title: Gravimeter data collected during research cruise MV0903 using a Bell BGM-3 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453292
title: Evolution of the Medical Education Research and Scholarship Unit at LKCMedicine

description: Excellence in medical education is one of LKCMedicine’s key mission. Combined with the evidence-based standards and best practices developed by the global medical education community, LKCMedicine strives to be a centre for transformative research and a model for innovative medical education. The Medical Education Research and Scholarship Unit (MERSU), established in 2014, plays a central role in enhancing the theories and practice of medical education in LKCMedicine, enacted through: (i) creating new knowledge through research, scholarship and informed innovation; (ii) building capacity through the development of a strong research environment and (iii) fostering a culture of collaborative and scholarly thinking in medical education and aligned with the ethos of LKCMedicine We will share the key milestones of MERSU the last three years (2016-2018) that have led to the establishment of an inclusive medical education research and scholarship ecosystem at LKCMedicine. Housed previously within a shared office space, MERSU has since grew and moved to the newly completed Clinical Sciences Building at Mandalay Road, occupying a dedicated environment optimised for building an inclusive community of practice and inquiry. It is composed of an ‘idea incubator and accelerator’ space hosting scholarship activities like seminars, journal clubs, brainstorming sessions and experiments. The Wall of MedEd acknowledges the contributions of staff and students. Within LKCMedicine, knowledge and expertise on medical education are constantly shared through the supervision of Year 4 medical students’ scholarly projects by MERSU. Collaborations with our partners e.g. research projects with CRADLE@NTU, joint exhibition booth at AMEE conferences with Imperial College London - Medical Education Research Unit and National Healthcare Group - HOMER further enhance the reputation and ecosystem of medical education in Singapore. The latest development with medical education research in LKCMedicine is a strategic research plan that outlines three programmatic research directions: Emerging Technologies (ET), Team-Based Learning (TBL); and Diagnostic Reasoning. Through an effective organisational alignment that allows both needs-driven scholarship efforts and globally relevant research and innovation, MERSU aims to become a Centre for Excellence in Medical Education.
DOI: 10.7284/100604
title: Meteorological Station data collected during research cruise MV0903 using a SIO MET-System instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition