cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1304505.v5
title: Genes co-regulated with <i>LBD16</i> in nematode feeding sites inferred from <i>in silico</i> analysis show similarities to regulatory circuits mediated by the auxin/cytokinin balance in Arabidopsis

description: Plant endoparasitic nematodes, root-knot and cyst nematodes (RKNs and CNs) induce within the root vascular cylinder transfer cells used for nourishing, termed giant cells (GCs) and syncytia. Understanding the molecular mechanisms behind this process is essential to develop tools for nematode control. Based on the crucial role in gall development of <i>LBD16</i>, also a key component of the auxin pathway leading to the divisions in the xylem pole pericycle during lateral root (LR) formation, we investigated genes co-regulated with <i>LBD16</i> in different transcriptomes and analyzed their similarities and differences with those of RKNs and CNs feeding sites (FS). This analysis confirmed <i>LBD16</i> and its co-regulated genes, integrated in signaling cascades mediated by auxins during LR and callus formation, as a particular feature of RKN-FS distinct to CNs. However, <i>LBD16</i>, and its positively co-regulated genes, were repressed in syncytia, suggesting a selective down- regulation of the <i>LBD16</i> auxin mediated pathways in CNs-FS. Interestingly, cytokinin-induced genes are enriched in syncytia and we encountered similarities between the transcriptome of shoot regeneration from callus, modulated by cytokinins, and that of syncytia. These findings establish differences in the regulatory networks leading to both FS formation, probably modulated by the auxin/cytokinin balance.
DOI: 10.6084/m9.figshare.1304338
title: Drosophila_melanogaster_spitz_allelic_series_15Landmarks.txt

description: This is a small dataset for 3 alleles in the <em>spitz</em> gene of <em>Drosophila melanogaster</em>. All three mutant alleles were backcrossed into a common wild type strain (Samarkand) for 10 generations prior to rearing the flies (all at the same time), dissecting and imaging the wings. There are 15 landmarks used here (the ones advocated by Chris Klingenberg). I used Klingenberg's ImageJ macro to get the landmarks.
DOI: 10.6084/m9.figshare.1304342
title: spitz_alleles_complementation

description: This is just a simple table of results for the complementation analysis among alleles of spitz used for the allelic series of wing shape in Drosophila.
DOI: 10.6084/m9.figshare.1304392.v1
title: Online Data Supplement: Longevity is linked to mitochondrial mutation rates in rockfish: a test using Poisson regression

description: This is the online supplement for: Xia Hua, Peter Cowman, Dan Warren, and Lindell Bromham <em>Longevity is linked to mitochondrial mutation rates in rockfish: a test using Poisson regression.</em> Mol Biol Evol first published online June 5, 2015 doi:10.1093/molbev/msv137 It contains scripts, files and alignments assoicated with the paper to reproduce the branch length estimation analyses
DOI: 10.6084/m9.figshare.1304505.v4
title: Genes co-regulated with <i>LBD16</i> in nematode feeding sites inferred from <i>in silico</i> analysis show similarities to regulatory circuits mediated by the auxin/cytokinin balance in Arabidopsis

description: Plant endoparasitic nematodes, root-knot and cyst nematodes (RKNs and CNs) induce within the root vascular cylinder transfer cells used for nourishing, termed giant cells (GCs) and syncytia. Understanding the molecular mechanisms behind this process is essential to develop tools for nematode control. Based on the crucial role in gall development of <i>LBD16</i>, also a key component of the auxin pathway leading to the divisions in the xylem pole pericycle during lateral root (LR) formation, we investigated genes co-regulated with <i>LBD16</i> in different transcriptomes and analyzed their similarities and differences with those of RKNs and CNs feeding sites (FS). This analysis confirmed <i>LBD16</i> and its co-regulated genes, integrated in signaling cascades mediated by auxins during LR and callus formation, as a particular feature of RKN-FS distinct to CNs. However, <i>LBD16</i>, and its positively co-regulated genes, were repressed in syncytia, suggesting a selective down- regulation of the <i>LBD16</i> auxin mediated pathways in CNs-FS. Interestingly, cytokinin-induced genes are enriched in syncytia and we encountered similarities between the transcriptome of shoot regeneration from callus, modulated by cytokinins, and that of syncytia. These findings establish differences in the regulatory networks leading to both FS formation, probably modulated by the auxin/cytokinin balance.
DOI: 10.6084/m9.figshare.1304337
title: Thomsen 1986 dataset

description: Table 1 from Thomsen's classic paper, Weak elastic anisotropy, containing elastic properties for 58 rocks and minerals. Note: I am not the author or compiler of this dataset.
DOI: 10.6084/m9.figshare.1304303
title: Thamesdown Election Results

description: Thamesdown Borough Council (District) election results 1976 to 1995
DOI: 10.6084/m9.figshare.1304337.v1
title: Thomsen 1986 dataset

description: Table 1 from Thomsen's classic paper, Weak elastic anisotropy, containing elastic properties for 58 rocks and minerals. Note: I am not the author or compiler of this dataset.
DOI: 10.6084/m9.figshare.1304338.v1
title: Drosophila_melanogaster_spitz_allelic_series_15Landmarks.txt

description: This is a small dataset for 3 alleles in the <em>spitz</em> gene of <em>Drosophila melanogaster</em>. All three mutant alleles were backcrossed into a common wild type strain (Samarkand) for 10 generations prior to rearing the flies (all at the same time), dissecting and imaging the wings. There are 15 landmarks used here (the ones advocated by Chris Klingenberg). I used Klingenberg's ImageJ macro to get the landmarks.
DOI: 10.6084/m9.figshare.1304342.v1
title: spitz_alleles_complementation

description: This is just a simple table of results for the complementation analysis among alleles of spitz used for the allelic series of wing shape in Drosophila.
DOI: 10.6084/m9.figshare.1304277
title: pipeline with cracks

description: This is a 3d phantom generated by actual CT images. It's size is 128*128*12. That is, there are 12 slices of image in this dataset with the resolution of each slice is 128*128. The datatype in this file is unsigned char.
DOI: 10.6084/m9.figshare.1304289
title: Optimal stomatal behaviour around the world

description: This database accompanies the publication "Lin et al. (2015) Optimal stomatal behaviour around the world. Nature Climate Change, 5, 459–464. This database is a collection of published and unpublished data sets. For the list of the original source and data contributors, please see supplementary information Table S2 in the manuscript above. <strong>All users should cite the following manuscript:</strong> Lin et al. (2015) Optimal stomatal behaviour around the world. Nature Climate Change, 5, 459–464. DOI: 10.1038/NCLIMATE2550 <em><br></em> Contact: Yan-Shih Lin (yanshihL [at] gmail.com)<br>Belinda Medlyn (belinda.medlyn [at] mq.edu.au)<br>Remko Duursma (remkoduursma [at] gmail.com) VariableDescriptionUnits or allowed values Pathway Photosynthetic pathway C3, C4, CAM Type Gymnosperm or angiosperm 'gymnosperm', 'angiosperm' Plantform Plant life form 'tree', 'shrub', 'grass', 'crop', 'savanna' Leafspan Evergreen or Deciduous 'evergreen', 'deciduous' Tregion Biome 'arctic', 'boreal', 'temperate', 'tropical' Wregion Classification based on aridity index 'arid', 'semi-arid', 'dry sub-humid', 'humid' Wregion2 Moisture index (numerical) opt Growing under ambient or stressed condition 'opt' or 'non-opt' Species Species name (string) CO2S CO2 concentration at leaf surface ppm Datacontrib Name of the data contributor (string) Growthcond Growth condition 'Glasshouse', ' Field', 'Potted plant', 'Whole-tree chamber', etc. Trmmol Leaf transpiration mmol m-2 s-1 PARin Photosynthetically active radiation in cuvette umol m-2 s-1 Location Site location (string) latitude Site latitude Decimal degrees longitude Site longitude Decimal degrees Tleaf Leaf temperature degrees C Cond Stomatal conductance mol m-2 s-1 Photo Photosynthetic rate umol m-2 s-1 VPD Vapour pressure deficit kPa
DOI: 10.6084/m9.figshare.1304276
title: phantom of pipeline

description: This is a 3d phantom generated by simulation. It's size is 128*128*30. That is, there are 30slices of image in this dataset with the resolution of each slice is 128*128. The datatype in this file is unsigned char.
DOI: 10.6084/m9.figshare.1304303.v1
title: Thamesdown Election Results

description: Thamesdown Borough Council (District) election results 1976 to 1995
DOI: 10.6084/m9.figshare.1304303.v2
title: Thamesdown Election Results

description: Thamesdown Borough Council (District) election results 1976 to 1995
DOI: 10.6084/m9.figshare.1304275
title: reference pipeline witout cracks

description: This is a 3d phantom generated by actual CT images. It's size is 128*128*12. That is, there are 12 slices of image in this dataset with the resolution of each slice is 128*128. The datatype in this file is unsigned char.It is noted that the model is free from cracks.
DOI: 10.6084/m9.figshare.1304274
title: piepeline phantom without cracks

description: This is a 3d phantom generated by actual CT images. It's size is 128*128*30 That is, there are 30 slices of image in this dataset with the resolution of each slice is 128*128. The datatype in this file is unsigned char.It is noted that the model is free from cracks.
DOI: 10.6084/m9.figshare.1304289.v1
title: Optimal stomatal behaviour around the world

description: This database accompanies the publication "Lin et al. (2015) Optimal stomatal behaviour around the world. Nature Climate Change (<em>in press</em>). This database is a collection of published and unpublished data sets. For the list of the original source and data contributors, please see supplementary information Table S2 in the manuscript above. <strong>All users should cite the following manuscript:</strong> Lin et al. (2015) Optimal stomatal behaviour around the world. Nature Climate Change (<em>in press</em>)<br>DOI: 10.1038/NCLIMATE2550 *<em>full citation will be updated soon!</em> <em><br></em> Contact: Yan-Shih Lin (yanshihL [at] gmail.com)<br>Belinda Medlyn (belinda.medlyn [at] mq.edu.au)<br>Remko Duursma (remkoduursma [at] gmail.com) VariableDescriptionUnits or allowed values Pathway Photosynthetic pathway C3, C4, CAM Type Gymnosperm or angiosperm 'gymnosperm', 'angiosperm' Plantform Plant life form 'tree', 'shrub', 'grass', 'crop', 'savanna' Leafspan Evergreen or Deciduous 'evergreen', 'deciduous' Tregion Biome 'arctic', 'boreal', 'temperate', 'tropical' Wregion Classification based on aridity index 'arid', 'semi-arid', 'dry sub-humid', 'humid' Wregion2 Moisture index (numerical) opt Growing under ambient or stressed condition 'opt' or 'non-opt' Species Species name (string) CO2S CO2 concentration at leaf surface ppm Datacontrib Name of the data contributor (string) Growthcond Growth condition 'Glasshouse', ' Field', 'Potted plant', 'Whole-tree chamber', etc. Trmmol Leaf transpiration mmol m-2 s-1 PARin Photosynthetically active radiation in cuvette umol m-2 s-1 Location Site location (string) latitude Site latitude Decimal degrees longitude Site longitude Decimal degrees Tleaf Leaf temperature degrees C Cond Stomatal conductance mol m-2 s-1 Photo Photosynthetic rate umol m-2 s-1 VPD Vapour pressure deficit kPa
DOI: 10.6084/m9.figshare.1304274.v1
title: piepeline phantom without cracks

description: This is a 3d phantom generated by actual CT images. It's size is 128*128*30 That is, there are 30 slices of image in this dataset with the resolution of each slice is 128*128. The datatype in this file is unsigned char.It is noted that the model is free from cracks.
DOI: 10.6084/m9.figshare.1304202
title: Carausius morosus in San Diego

description: List of hostplants for <em>Carausius morosus</em> from San Diego Zoo.
DOI: 10.6084/m9.figshare.1304256
title: A lab package for TDD experiment replication

description: The package contains the questionnaires, tasks and training material used to run the study
DOI: 10.6084/m9.figshare.1304173
title: Klout Score-ranking of the top 15 science stars of Twitter

description: The Klout scores of the top fifteen scientists using Twitter (based on the number of Twitter followers; source: http://news.sciencemag.org/scientific-community/2014/09/top-50-science-stars-twitter) was retrieved (on 7th of February, 2015; source: https://klout.com/home) and used for ranking in ascending order (with number one corresponding to the highest Klout score).
DOI: 10.6084/m9.figshare.1304256.v1
title: A lab package for TDD experiment replication

description: The package contains the questionnaires, tasks and training material used to run the study
DOI: 10.6084/m9.figshare.1302029
title: UNH RM2 tow tank experiment: Raw data

description: This fileset contains the raw data from the UNH RM2 tow tank experiment. See link below for processing code, which will download this data as needed.
DOI: 10.6084/m9.figshare.1304144.v2
title: Prospective Statistical Power in Frontiers in Psychology 2014

description: Database of all Original Research papers published in Frontiers in Psychology in 2014 with the list of those which applied a Prospective Statistical Power
DOI: 10.6084/m9.figshare.1304173.v2
title: Klout Score-ranking of the top 15 science stars of Twitter

description: The Klout scores of the top fifteen scientists using Twitter (based on the number of Twitter followers; source: http://news.sciencemag.org/scientific-community/2014/09/top-50-science-stars-twitter) was retrieved (on 7th of February, 2015; source: https://klout.com/home) and used for ranking in ascending order (with number one corresponding to the highest Klout score).
DOI: 10.6084/m9.figshare.1301998
title: raw data for a Drosophila self-learning expriment in the torque meter: 8_HS_test

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.1301999
title: raw data for a Drosophila self-learning expriment in the torque meter: 9_PKC53_putativemutant_mi

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.1301996
title: raw data for a Drosophila self-learning expriment in the torque meter: 6_HS_test

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.1301997
title: raw data for a Drosophila self-learning expriment in the torque meter: 7_HS_test

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.1301998.v3
title: raw data for a Drosophila self-learning expriment in the torque meter: 8_HS_test

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.1301999.v3
title: raw data for a Drosophila self-learning expriment in the torque meter: 9_PKC53_putativemutant_mi

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.1301998.v2
title: raw data for a Drosophila self-learning expriment in the torque meter: 8_HS_test

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.1301999.v2
title: raw data for a Drosophila self-learning expriment in the torque meter: 9_PKC53_putativemutant_mi

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.1301994
title: raw data for a Drosophila self-learning expriment in the torque meter: 4_PKC53_RNAi

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.1301995
title: raw data for a Drosophila self-learning expriment in the torque meter: 5_HS_test

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.1301996.v3
title: raw data for a Drosophila self-learning expriment in the torque meter: 6_HS_test

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.1301997.v3
title: raw data for a Drosophila self-learning expriment in the torque meter: 7_HS_test

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.1304173.v3
title: Klout Score-ranking of the top 15 science stars of Twitter

description: The Klout scores of the top fifteen scientists using Twitter (based on the number of Twitter followers; source: http://news.sciencemag.org/scientific-community/2014/09/top-50-science-stars-twitter) was retrieved (on 7th of February, 2015; source: https://klout.com/home) and used for ranking in ascending order (with number one corresponding to the highest Klout score).
DOI: 10.6084/m9.figshare.1301993
title: raw data for a Drosophila self-learning expriment in the torque meter: 3_FoxPdicerRNAi

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.1301997.v2
title: raw data for a Drosophila self-learning expriment in the torque meter: 7_HS_test

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.1301995.v3
title: raw data for a Drosophila self-learning expriment in the torque meter: 5_HS_test

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.1301996.v2
title: raw data for a Drosophila self-learning expriment in the torque meter: 6_HS_test

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.1301993.v3
title: raw data for a Drosophila self-learning expriment in the torque meter: 3_FoxPdicerRNAi

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.1301994.v3
title: raw data for a Drosophila self-learning expriment in the torque meter: 4_PKC53_RNAi

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.1301992
title: raw data for a Drosophila self-learning expriment in the torque meter: 21_THG4_TdcG4_TrpA

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.1301994.v2
title: raw data for a Drosophila self-learning expriment in the torque meter: 4_PKC53_RNAi

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.1301991
title: raw data for a Drosophila self-learning expriment in the torque meter: 20_PKCRNAI

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.1301993.v2
title: raw data for a Drosophila self-learning expriment in the torque meter: 3_FoxPdicerRNAi

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.1301995.v2
title: raw data for a Drosophila self-learning expriment in the torque meter: 5_HS_test

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.1301989
title: raw data for a Drosophila self-learning expriment in the torque meter: 19_TNT_c232_c105_fliesgenotypenotcertain

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.1301990
title: raw data for a Drosophila self-learning expriment in the torque meter: 2_PKC53emutant_outcrossed

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).