cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17866/rd.salford.12951581.v1
title: Data associated with Prince M et al. A pin-array method for capturing tissue deformation under defined pressure distributions and its application to prosthetic socket design

description: This is the data associated with: Prince
M, Kenney L, Howard D. A pin-array method for
capturing tissue deformation under defined pressure distributions and its
application to prosthetic socket design. Med Eng Phys. 2020; 84: 136-143.The Excel file is structured as follows:Tab 1: Raw data for figure 2Tab 2: Time series data used to generate figure 4aTab 3: Time series data used to generate figure 4bTab 4: Pad forces for study 2 (force required to push the pad down to the datum level)<br><br>
DOI: 10.15468/dl.e9e9h8
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Penaeus semisulcatus De Haan, 1844",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000354-250213122211068/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17866/rd.salford.12994106
title: Worsley

description: Documents relating to the heritage of Worsley, Salford, Greater Manchester including archaeological reports and photographs
DOI: 10.17866/rd.salford.12994106.v1
title: Worsley

description: Documents relating to the heritage of Worsley, Salford, Greater Manchester including archaeological reports and photographs
DOI: 10.15468/dl.tgjs29
title: Occurrence Download

description: A dataset containing 515 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Vigna multinervis Hutch. & Dalziel"
 ]
}

 The dataset includes 515 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000356-250213122211068/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sxu5k8
title: Occurrence Download

description: A dataset containing 150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "PublishingOrg is 95cb537c-74c5-4c1e-ae24-32e7ea08f380",
 "TaxonKey is one of (Dryopteris aemula (Aiton) Kuntze, Dryopteris oreades Fomin, Dryopteris carthusiana (Vill.) H.P.Fuchs, Dryopteris guanchica Gibby & Jermy, Dryopteris dilatata (Hoffm.) A.Gray, Dryopteris ×fraser-jenkinsii Gibby & Widén, Dryopteris ×asturiensis Fraser-Jenk. & Gibby, Dryopteris glabra (Brack.) Kuntze, Dryopteris hawaiiensis (Hillebr.) W.J.Rob., Dryopteris affinis (Lowe) Fraser-Jenk., Dryopteris corleyi Fraser-Jenk., Dryopteris pseudomas (Woll.) Holub & Pouzar)"
 ]
}

 The dataset includes 150 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000355-250213122211068/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17866/rd.salford.12990680
title: KRONA plot of microbiomes of pooled samples from mouths, skin and Wastewater

description: Unpublished data. To view the data, please download the file.<br>A KRONA plot displaying the relative abundance of bacteria identified in three pooled samples (Select the sample in the top left):<br><br>Pooled mouth samples from volunteers donating samples at Latitude Music Festival (mouth.fastq.out.cut).<br>Pooled skin samples from volunteers donating samples at Latitude Music Festival (skin.fastq.out.cut).<br>A pooled sample of sludge, mid-treatment, and treated wastewater from Bolton wastewater treatment plant (United Utilities); (wastewater.fastq.out.cut).<br>In each case, DNA from the samples was extracted using commercial DNA extraction kits (Qiagen) and the 16S gene amplified by Polymerase Chain Reaction (PCR) and sequenced using Oxford Nanopore reagents and MinION device. Further details can be found at: https://nanoporetech.com/applications/environmental-research
DOI: 10.17866/rd.salford.12990680.v1
title: KRONA plot of microbiomes of pooled samples from mouths, skin and Wastewater

description: Unpublished data. To view the data, please download the file.<br>A KRONA plot displaying the relative abundance of bacteria identified in three pooled samples (Select the sample in the top left):<br><br>Pooled mouth samples from volunteers donating samples at Latitude Music Festival (mouth.fastq.out.cut).<br>Pooled skin samples from volunteers donating samples at Latitude Music Festival (skin.fastq.out.cut).<br>A pooled sample of sludge, mid-treatment, and treated wastewater from Bolton wastewater treatment plant (United Utilities); (wastewater.fastq.out.cut).<br>In each case, DNA from the samples was extracted using commercial DNA extraction kits (Qiagen) and the 16S gene amplified by Polymerase Chain Reaction (PCR) and sequenced using Oxford Nanopore reagents and MinION device. Further details can be found at: https://nanoporetech.com/applications/environmental-research
DOI: 10.5281/zenodo.14866381
title: IODP Expedition 372B/375 P-wave velocity caliper (discrete)

description: P-wave velocity data were measured on undisturbed section halves (JRSO-defined x-axis) and/or discrete cube and cylinder samples (x, y, or z-axis) using pairs of piezoelectric transducers mounted on a caliper system. Report includes P-wave velocity in x, y, and/or z-direction, caliper separation, traveltime between transucers, and first arrival picks.
DOI: 10.5281/zenodo.14866382
title: IODP Expedition 372B/375 P-wave velocity caliper (discrete)

description: P-wave velocity data were measured on undisturbed section halves (JRSO-defined x-axis) and/or discrete cube and cylinder samples (x, y, or z-axis) using pairs of piezoelectric transducers mounted on a caliper system. Report includes P-wave velocity in x, y, and/or z-direction, caliper separation, traveltime between transucers, and first arrival picks.
DOI: 10.15468/dl.7zmdzn
title: Occurrence Download

description: A dataset containing 12951 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Roadkill"
 ]
}

 The dataset includes 12951 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000357-250213122211068/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kk5s6w
title: Occurrence Download

description: A dataset containing 216 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "OccurrenceStatus is Present",
 "TaxonKey is Vigna laurentii De Wild."
 ]
}

 The dataset includes 216 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000358-250213122211068/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28409786
title: Historical Data for Risk-adjusted DRL.zip

description: The dataset contains the historical data used for the four stock market used for experiment.
DOI: 10.6084/m9.figshare.28409786.v1
title: Historical Data for Risk-adjusted DRL.zip

description: The dataset contains the historical data used for the four stock market used for experiment.
DOI: 10.15468/dl.5t8dpp
title: Occurrence Download

description: A dataset containing 162 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Penaeus japonicus Spence Bate, 1888",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 162 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000360-250213122211068/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rxstcs
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Vigna ambacensis Welw."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000361-250213122211068/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25318/3610055201-eng
title: National balance sheet, total chartered banks and quasi-banks, quarterly, 1990 - 2012

description: This table contains 64 series, with data for years 1990 - 2012 (not all combinations necessarily have data for all years), and is no longer being released. This table contains data described by the following dimensions (Not all combinations are available): Geography (1 item: Canada);  Valuation (2 items: Book value; Market value);  Categories (32 items: Total assets; Non-financial assets; Non-residential structures; Machinery and equipment; ...).
DOI: 10.15468/dl.uwp36h
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is one of (Paraguay, Bolivia (Plurinational State of), Venezuela (Bolivarian Republic of), Chile, Peru, Ecuador, Argentina, Colombia, Brazil, Uruguay)",
 "DatasetKey is one of (NMNH Extant Specimen Records (USNM, US), KUBI Herpetology Collection, ZUEC-AMP - Coleção de Anfíbios do Museu de Zoologia da UNICAMP, FNJV - Fonoteca Neotropical Jacques Vielliard, TNHC Herpetology Collection, INSDC Sequences, Museum of Comparative Zoology, Harvard University, University of Michigan Museum of Zoology, Division of Reptiles & Amphibians, CM Herps Collection)",
 "PublishingOrg is one of (c1da06f0-580e-11dc-8a9e-b8a03c50a862, b4640710-8e03-11d8-b956-b8a03c50a862, 6ea87510-0561-11d8-b851-b8a03c50a862, 3c6ad080-bdbe-11da-ac59-b8a03c50a862, b554c320-0560-11d8-b851-b8a03c50a862, d073b448-6b80-4364-8c38-18d08b88797f, bc092ff0-02e4-11dc-991f-b8a03c50a862)",
 "TaxonKey is Aplastodiscus albofrenatus (Lutz, 1924)"
 ]
}

 The dataset includes 74 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000362-250213122211068/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25318/3610055201-fra
title: Comptes du bilan national, total banques à charte et quasi-banques, trimestriel, 1990 - 2012

description: Ce tableau contient 64 séries, avec des données pour les années 1990 - 2012 (il n'y a pas nécessairement de données pour toutes les années pour l'ensemble des combinaisons), et sa mise à jour n'a plus lieu. Ce tableau contient des données telles que décrites par les dimensions suivantes (Les combinaisons ne sont pas toutes disponibles) : Géographie (1 élément : Canada) ; Valuation (2 éléments : Valeur comptable; Valeur marchande) ; Catégories (32 éléments : Total des actifs; Actifs non financiers; Construction non résidentielle; Machines et matériel; ...).
DOI: 10.15468/dl.uq27am
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Vigna ambacensis var. pubigera (Baker) Maréchal, Mascherpa & Stainier"
 ]
}

 The dataset includes 66 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000363-250213122211068/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28409699
title: GRID IDs of institutions in present-day Germany that published between 1920 and 1989 -- categorised by East and West

description: Additional data for GRID (https://figshare.com/collections/GRID/3812929 -- latest official update).
DOI: 10.15468/dl.x5sgbk
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Marsupenaeus japonicus (Spence Bate, 1888)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 62 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000365-250213122211068/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6tbqg5
title: Occurrence Download

description: A dataset containing 2159 species occurrences available in GBIF matching the query:
{
 "or" : [
 "ScientificName is Asclepias brachystephana Engelm. ex Torr.",
 "ScientificName is Asclepias macrotis Torr.",
 "ScientificName is Asclepias scaposa Vail"
 ]
}

 The dataset includes 2159 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000364-250213122211068/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1971014669
title: Macromolecular Crystallography in Lyon/Toulouse/Bordeaux / IBCP-MMSB ICBMS / IPBS LMGM / IECB IBGC CBMN

description: The different research teams who are part of this BAG are located in Lyon, Toulouse and Bordeaux. They are mainly working on worldwide health concerns
or biotechnological relevant projects. In more details, infectiology, molecular assemblies, biosynthetic pathways or glycobiology are their main research axises.
Important results have been obtained so far regarding the development of new therapeutic strategies against several infectious diseases or regarding plastic
bioremediation. In order to go further into details of all these studies, access to ESRF facilities is a requirement.
DOI: 10.25318/3610059901-eng
title: Cannabis industry production account

description: Cannabis production by industry and medical and non-medical use, Canada, provinces and territories, annual.
DOI: 10.15468/dl.aye4uu
title: Occurrence Download

description: A dataset containing 229 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "OccurrenceStatus is Present",
 "TaxonKey is Vigna hosei (Craib) Backer"
 ]
}

 The dataset includes 229 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000367-250213122211068/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bzkbqn
title: Occurrence Download

description: A dataset containing 1474154 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Edinburgh (E) Herbarium Specimens"
 ]
}

 The dataset includes 1474154 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000353-250213122211068/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25318/3610059901-fra
title: Compte de production de l’industrie du cannabis

description: Production du cannabis par industrie et par l'utilisation à des fins médicales et non médicales, Canada, provinces et territoires, annuel.
DOI: 10.15468/dl.bns7y2
title: Occurrence Download

description: A dataset containing 3912 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phoebastria nigripes (Audubon, 1839)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3912 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000368-250213122211068/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v2rqpd
title: Occurrence Download

description: A dataset containing 9399958 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "DatasetKey is one of (EOD – eBird Observation Dataset, Colección de Anfibios del Museo de Zoología QCAZ, Galapagos Subtidal Biodiversity, Registro de trampas cámara del monitoreo a escala de paisajes, Observation.org, Nature data from around the World, KUBI Herpetology Collection, Xeno-canto - Bird sounds from around the world, NMNH Extant Specimen Records (USNM, US), AMNH Bird Collection)",
 "TaxonKey is Chordata"
 ]
}

 The dataset includes 9399958 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000330-250213122211068/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14866596
title: Psychoacoustical measurements and subjective soundscape evaluations of two studies regarding soundscape design approach

description: This dataset corresponds to the analyses carried out in the article "Louwers, G., Pont, S., Gommers, D., van der Heide, E., & Özcan, E. (2024). Sonic ambiances through fundamental needs: An approach on soundscape interventions for intensive care patients. The Journal of the Acoustical Society of America, 156(4), 2376-2394." as part of the PhD dissertation "Positive listening experiences for intensive care patients: A listener-centric, need-based approach to ICU soundscape design".
DOI: 10.5281/zenodo.14866597
title: Psychoacoustical measurements and subjective soundscape evaluations of two studies regarding soundscape design approach

description: This dataset corresponds to the analyses carried out in the article "Louwers, G., Pont, S., Gommers, D., van der Heide, E., & Özcan, E. (2024). Sonic ambiances through fundamental needs: An approach on soundscape interventions for intensive care patients. The Journal of the Acoustical Society of America, 156(4), 2376-2394." as part of the PhD dissertation "Positive listening experiences for intensive care patients: A listener-centric, need-based approach to ICU soundscape design".
DOI: 10.5281/zenodo.11219861
title: Custom genome used in Rouco et al. 2024

description: This dataset contains the custom genome generated to analyse sequencing data in the manuscript titled "Temporal constraints on enhancer usage shape the regulation of limb gene transcription" by Rouco et al. 2024. For more information see Materials and Methods section. 

The customized genome and index were generated based on the GRCm39/mm39 (Cunningham et al., 2022) incorporating the dmCherry-P2A-CRE and floxed-SV40pASTOP-EYFP cassettes as artificial chromosomes, therefore we termed it as GRCmm39/ mm39_dsmCherry_P2A_CRE_EYFP genome:

mm39_dsmCherry_P2A_CRE_EYFP.fa

mm39_dsmCherry_P2A_CRE_EYFP.fa.fai

These files were used to build a custom reference for different downstream analyses using the following pipelines:CellRanger: cellranger_mm39_dsmCherry_P2A_CRE_EYFP.sh  

Bowtie2: bowtie2_mm39_dsmCherry_P2A_CRE_EYFP.sh

Star: star_mm39_dsmCherry_P2A_CRE_EYFP.sh

For annotation, GTF files sourced from ENSEMBL GRCm39 release 104 (Cunningham et al., 2022) were used, with a filtering process applied to exclude read-through/overlapping transcripts. Only transcripts annotated as 'protein-coding' for their respective genes were retained, while those flagged as 'retained_intron', 'nonsense-mediated decay', etc., were discarded. This filtration aimed to retain only unambiguous exons, mitigating potential quantitative biases during data analysis conducted using STAR/Cufflinks (Amandio et al., 2016).

mergeOverlapGenesOfFilteredTranscriptsOfMus_musculus.GRCm39.104_ExonsOnly_UCSC_dsmCherry_P2A_CRE_EYFP.gtf
DOI: 10.5281/zenodo.11219860
title: Custom genome used in Rouco et al. 2024/2025

description: This dataset contains the custom genomes generated to analyse sequencing data in the manuscript titled "Temporal constraints on enhancer usage shape the regulation of limb gene transcription" by Rouco et al. 2024_2025. For more information see Materials and Methods section. 

The main customized genome and index used across the manuscript were generated based on the GRCm39/mm39 (Cunningham et al., 2022) incorporating the dmCherry-P2A-CRE and floxed-SV40pASTOP-EYFP cassettes as artificial chromosomes, therefore we termed it as GRCmm39/ mm39_dsmCherry_P2A_CRE_EYFP genome:

mm39_dsmCherry_P2A_CRE_EYFP.fa

mm39_dsmCherry_P2A_CRE_EYFP.fa.fai

These files were used to build a custom reference for different downstream analyses using the following pipelines:CellRanger: cellranger_mm39_dsmCherry_P2A_CRE_EYFP.sh  

Bowtie2: bowtie2_mm39_dsmCherry_P2A_CRE_EYFP.sh

Star: star_mm39_dsmCherry_P2A_CRE_EYFP.sh

For annotation, GTF files sourced from ENSEMBL GRCm39 release 104 (Cunningham et al., 2022) were used, with a filtering process applied to exclude read-through/overlapping transcripts. Only transcripts annotated as 'protein-coding' for their respective genes were retained, while those flagged as 'retained_intron', 'nonsense-mediated decay', etc., were discarded. This filtration aimed to retain only unambiguous exons, mitigating potential quantitative biases during data analysis conducted using STAR/Cufflinks (Amandio et al., 2016).

mergeOverlapGenesOfFilteredTranscriptsOfMus_musculus.GRCm39.104_ExonsOnly_UCSC_dsmCherry_P2A_CRE_EYFP.gtf

The second customized genome and index used in this manuscript, for precise genotype characterization, was generated based on the GRCm39/mm39 (Cunningham et al., 2022) incorporating the dmCherry-P2A-CRE cassette at the Shox2 locus, therefore we termed it as GRCmm39/ mm39_Shox2_dsmCherry_P2A_CRE_bGHpA_KI genome:

mm39_Shox2_dsmCherry_P2A_CRE_bGHpA_KI.fa

mm39_Shox2_dsmCherry_P2A_CRE_bGHpA_KI.fa.fai

These files were used to build a custom reference for different downstream analyses using the following pipeline:

bowtie2_mm39_Shox2_dsmCherry_P2A_CRE_bGHpA_KI.sh

The following GTF with the shifted coordinates accounting for the insertion of the cassette was also created:

shifted_completed_mm39_Shox2_dsmCherry_P2A_CRE_KI.gtf

Files with shifted coordinates following the pipeline described in: https://github.com/lldelisle/howCanYou/tree/main/NGS/mutant_genome#shift-annotations-to-work-on-your-mutant-genome