cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.d3fyew
title: Occurrence Download

description: A dataset containing 2776 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Atelerix algirus",
 "HasCoordinate is true",
 "Country is Spain"
 ]
}

 The dataset includes 2776 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008907-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30265795
title: De novo assembly of transcriptomes of ten ellobiid snails (Ellobiidae, Gastropoda)

description: Obtain transcriptome data of Ellobiidae
DOI: 10.6084/m9.figshare.30265795.v2
title: De novo assembly of transcriptomes of ten ellobiid snails (Ellobiidae, Gastropoda)

description: Obtain transcriptome data of Ellobiidae
DOI: 10.6084/m9.figshare.30265795.v1
title: The phylogeny of Ellobiidae

description: Obtain transcriptome data of Ellobiidae
DOI: 10.6075/j0183532
title: CIL:49001, Mus musculus, parietal cell, zymogen, mucus. In Cell Image Library

description: Light micrograph, toluidine blue staining.
description: Gender: Male
Age: 61 days
Subspecies: gastric, H,K, aATPase alpha -/-
Tissue: gastric mucosa, greater curvature
Preparation: Glutaraldehyde and paraformaldehyde in phosphate buffer
Stain: Toluidine blue
description: Item type: micrograph
Imaging mode: modes of light microscopy
DOI: 10.6075/j0jh3jsn
title: CIL:48811, Mus musculus, MC57-Cerulean. In Cell Image Library

description: Item type: confocal microscopy
description: To determine the origin (local vs. circulating) of tumor associated fibroblasts, a parabiotic pair of mice was created where only one mouse expressed EGFP under the control of the type I collagen alpha-1 promoter (COL-EGFP), and the other mouse expressed DsRed ubiquitously. On each mouse of the parabiotic pair, MC57-Cerulean cancer cells were injected on the distal flank. This folder contains images from the tumor grown in the COL-EGFP mouse, freshly explanted and analyzed ex vivo. The blue channel shows cancer cells, the red channel shows DsRed cells, the green channel shows COL-EGFP+ fibroblasts. 
 
Image name: 120513 Parabiot Rag MC57 COLEGFP tumor flank.lif - 4
 
Project: 20389
description: Mice were euthanized and tumors were freshly explanted. 1-2 mm thick sections were cut at different depths and kept in PBS during the imaging session. Fluorescent confocal microscopy was done using a Leica SP5 II TCS tandem scanner 2-photon spectral confocal microscope with XY motorized stage, using a 25X/NA 0.95 water lens from Leica.
DOI: 10.6075/j0bp01d7
title: CIL:48810, Mus musculus, MC57-Cerulean. In Cell Image Library

description: To determine the origin (local vs. circulating) of tumor associated fibroblasts, a parabiotic pair of mice was created where only one mouse expressed EGFP under the control of the type I collagen alpha-1 promoter (COL-EGFP), and the other mouse expressed DsRed ubiquitously. On each mouse of the parabiotic pair, MC57-Cerulean cancer cells were injected on the distal flank. This folder contains images from the tumor grown in the COL-EGFP mouse, freshly explanted and analyzed ex vivo. The blue channel shows cancer cells, the red channel shows DsRed cells, the green channel shows COL-EGFP+ fibroblasts. 
 
Image name: 120513 Parabiot Rag MC57 COLEGFP tumor flank.lif - 4
 
Project: 20389
description: Mice were euthanized and tumors were freshly explanted. 1-2 mm thick sections were cut at different depths and kept in PBS during the imaging session. Fluorescent confocal microscopy was done using a Leica SP5 II TCS tandem scanner 2-photon spectral confocal microscope with XY motorized stage, using a 25X/NA 0.95 water lens from Leica.
description: Item type: confocal microscopy
DOI: 10.15468/dl.xvt5xb
title: Occurrence Download

description: A dataset containing 289 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cephalorhynchus heavisidii"
 ]
}

 The dataset includes 289 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009558-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6075/j0b56h9s
title: CIL:48809, Mus musculus, MC57-Cerulean. In Cell Image Library

description: Mice were euthanized and tumors were freshly explanted. 1-2 mm thick sections were cut at different depths and kept in PBS during the imaging session. Fluorescent confocal microscopy was done using a Leica SP5 II TCS tandem scanner 2-photon spectral confocal microscope with XY motorized stage, using a 25X/NA 0.95 water lens from Leica.
description: Item type: confocal microscopy
description: To determine the origin (local vs. circulating) of tumor associated fibroblasts, a parabiotic pair of mice was created where only one mouse expressed EGFP under the control of the type I collagen alpha-1 promoter (COL-EGFP), and the other mouse expressed DsRed ubiquitously. On each mouse of the parabiotic pair, MC38-Cerulean cancer cells were injected on the distal flank. This folder contains images from the tumor grown in the COL-EGFP mouse, freshly explanted and analyzed ex vivo. The blue channel shows cancer cells, the red channel shows DsRed cells, the green channel shows COL-EGFP+ fibroblasts.Image name: 120513 Parabiot Rag MC57 COLEGFP tumor flank.lif - 3

Project: 20389
DOI: 10.25345/c53t9dk73
title: MassIVE MSV000099704 - Delftia_deserti_DSM1621_Extracts_Marfey's_Metal-degradation
title: HRMS/MS spectra of Delftia deserti DSM1621 and Delftia acidovorans DSM39 extracts (used for derivative detection via GNPS), Marfey's assay of purified Delftichelin A and metal-based oxidative degradation of Delftichelin A. Samples were measured using the Orbitrap Exploris 120 mass spectrometer.
DOI: 10.6075/j0222scz
title: CIL:48805, Mus musculus, MC57-Cerulean. In Cell Image Library

description: Item type: confocal microscopy
description: Mice were euthanized and tumors were freshly explanted. 1-2 mm thick sections were cut at different depths and kept in PBS during the imaging session. Fluorescent confocal microscopy was done using a Leica SP5 II TCS tandem scanner 2-photon spectral confocal microscope with XY motorized stage, using a 25X/NA 0.95 water lens from Leica.
description: To determine the origin (local vs. circulating) of tumor associated fibroblasts, a parabiotic pair of mice was created where only one mouse expressed EGFP under the control of the type I collagen alpha-1 promoter (COL-EGFP), and the other mouse expressed DsRed ubiquitously. On each mouse of the parabiotic pair, MC57-Cerulean cancer cells were injected on the distal flank. This folder contains images from the tumor grown in the COL-EGFP mouse, freshly explanted and analyzed ex vivo. The blue channel shows cancer cells, the red channel shows DsRed cells, the green channel shows COL-EGFP+ fibroblasts
 
Image name: 120513 Parabiot Rag MC57 COLEGFP tumor flank.lif - 2 
 
Project ID: 20389
DOI: 10.6075/j04m934b
title: CIL:48804, Mus musculus, MC57-Cerulean. In Cell Image Library

description: Item type: confocal microscopy
description: To determine the origin (local vs. circulating) of tumor associated fibroblasts, a parabiotic pair of mice was created where only one mouse expressed EGFP under the control of the type I collagen alpha-1 promoter (COL-EGFP), and the other mouse expressed DsRed ubiquitously. On each mouse of the parabiotic pair, MC57-Cerulean cancer cells were injected on the distal flank. This folder contains images from the tumor grown in the COL-EGFP mouse, freshly explanted and analyzed ex vivo. The blue channel shows cancer cells, the red channel shows DsRed cells, the green channel shows COL-EGFP+ fibroblasts
 
Image name: 120513 Parabiot Rag MC57 COLEGFP tumor flank.lif - 2 
 
Project ID: 20389
description: Mice were euthanized and tumors were freshly explanted. 1-2 mm thick sections were cut at different depths and kept in PBS during the imaging session. Fluorescent confocal microscopy was done using a Leica SP5 II TCS tandem scanner 2-photon spectral confocal microscope with XY motorized stage, using a 25X/NA 0.95 water lens from Leica.
DOI: 10.6075/j0nv9hh9
title: CIL:761, Patiria miniata, sperm. In Cell Image Library

description: Multi-tilt EM tomogram of primary human small airway epithelial cell (SAEC) in interphase state. The tomogram refers to the SAEC in figure S7 of the published manuscript: http://science.sciencemag.org/content/357/6349/eaag0025http://science.sciencemag.org/content/357/6349/eaag0025.
description: Preparation: glutaraldehyde fixed tissue; freeze substitution in Lowicryl
Relation to intact cell: sectioned tissue
Item type: recorded image
Imaging mode: microscopy with lenses; transmission electron microscopy (TEM)
Parameter imaged: modes of electron microscopy; EELS imaging
Source of contrast: electron scattering
Visualization methods: electron energy loss window
Processing history: unprocessed raw data
DOI: 10.6075/j0n29w1n
title: CIL:7455, Opercularia [NCBITaxon:168247], Opercularia coarctata, cell by organism, eukaryotic cell, Eukaryotic Protist, Ciliated Protist. In Cell Image Library

description: High resolution image of the extracellular, non-contractile stalk of Opercularia coarctata that is formed from the scopula. Cylinders ('straws') of fibrous material in the lumen of the stalk are surrounded by an outer membrane-like sheath. The fibrous cylinders have diameters similar to those of basal bodies. TEM taken on 6/10/69 by R. Allen with Philips 300 operating at 60kV. Neg. 14,800X. The raw film was scanned with an Epson Perfection V750 Pro. This image is suitable for quantitative analysis.

Standard glutaraldehyde fixation followed by osmium tetroxide, dehydrated in alcohol and embedded in an epoxy resin. Microtome sections prepared at approximately 75nm thickness.

Additional information available at (http://www5.pbrc.hawaii.edu/allen/).
description: Preparation: glutaraldehyde fixed tissue; osmium tetroxide fixed tissue; tissue in epoxy resin embedment; microtome-sectioned tissue
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM); illumination by electrons
Imaging mode: detection of electrons; film
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: stain with broad specificity; osmium tetroxide; uranyl salt; lead salt
Processing history: recorded image; film; unprocessed raw data
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
DOI: 10.6075/j0zg6r7g
title: CIL:7505, gallus gallus, erythrocyte. In Cell Image Library

description: Preparation: glutaraldehyde fixed tissue
Relation to intact cell: spread nucleus
Item type: film
Imaging mode: transmission electron microscopy (TEM); illumination by electrons; detection of electrons
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: negative staining; tungsten compound
Processing history: unprocessed raw data
description: A drop of a preparation of chicken erythrocyte nuclei was exposed to low ionic strength and centrifuged onto a formvar-carbon film, fixed with paraformaldehyde and negatively stained with sodium phosphotungstate. Images were recorded at 40KX and accelerating voltage of 1MeV at the University of Wisconsin HVEM facility.This image was taken with a specimen tilt of 40 degrees. A grouped image of the same field at a 60 degree tilt provides an oblique stereo view of the tangle of chromatin fibers in the dispersed nucleus.
DOI: 10.6075/j0g1603r
title: CIL:750, Necturus maculosus, nucleate erythrocyte. In Cell Image Library

description: X-ray analysis shows that the nucleated erythrocytes of the amphibian Necturus maculosus (Mud Puppy) contains more ordered chromatin than most nuclei. Here, chromatin fibers were isolated from N. maculosus erythrocyte nuclei using mild micrococcal nuclease digestion, fixed briefly with glutaraldehyde, applied to thin carbon films and negatively stained with aurothioglucose. ~30 nm fibers are seen, some exhibiting short regions with apparent structural order.
description: Preparation: unembedded tissue; glutaraldehyde fixed tissue
Relation to intact cell: isolated subcellular component
Item type: transmission electron microscopy (TEM)
Imaging mode: illumination by electrons; detection of electrons
Parameter imaged: electron density
Source of contrast: elastic scattering
Visualization methods: other negative stain
Processing history: raw unprocessed data
DOI: 10.6075/j0ks6qsx
title: CIL:749, Necturus maculosus, nucleate erythrocyte. In Cell Image Library

description: Preparation: unembedded tissue; glutaraldehyde fixed tissue
Relation to intact cell: isolated subcellular component
Item type: transmission electron microscopy (TEM)
Imaging mode: illumination by electrons; detection of electrons
Parameter imaged: electron density
Source of contrast: elastic scattering
Visualization methods: other negative stain
Processing history: raw unprocessed data
description: X-ray analysis shows that the nucleated erythrocytes of the amphibian Necturus maculosus (Mud Puppy) contains more ordered chromatin than most nuclei. Here, chromatin fibers were isolated from N. maculosus erythrocyte nuclei using mild micrococcal nuclease digestion, fixed briefly with glutaraldehyde, applied to thin carbon films and negatively stained with aurothioglucose. ~30 nm fibers are seen, some exhibiting short regions with apparent structural order.
DOI: 10.6075/j0bc3xmq
title: CIL:7600, Halteria grandinella, cell by organism, eukaryotic cell, Eukaryotic Protist, Ciliated Protist. In Cell Image Library

description: TEM taken on 3/12/71 by R. Allen with Hitachi HU11A operating at 75kV. Neg. 13,750X. The raw film was scanned with a Nikon Coolscan 9000ED. This image is available for quantitative analysis. Standard glutaraldehyde fixation followed by osmium tetroxide, dehydrated in alcohol and embedded in an epoxy resin. Microtome sections prepared at approximately 75nm thickness.

Additional information available at (http://www5.pbrc.hawaii.edu/allen/).
description: Preparation: glutaraldehyde fixed tissue; osmium tetroxide fixed tissue; tissue in epoxy resin embedment; microtome-sectioned tissue
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM); illumination by electrons
Imaging mode: detection of electrons; film
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: stain with broad specificity; osmium tetroxide; uranyl salt; lead salt
Processing history: recorded image; film; unprocessed raw data
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
description: High resolution transmission electron micrograph of Halteria showing both the large macronucleus with nuclear pores, dense heterochromatin bodies and nucleolus, and the small micronucleus.
DOI: 10.6075/j0vd6xq6
title: CIL:760, Patiria miniata, sperm. In Cell Image Library

description: Preparation: glutaraldehyde fixed tissue; freeze substitution in Lowicryl
Relation to intact cell: sectioned tissue
Item type: recorded image
Imaging mode: microscopy with lenses; transmission electron microscopy (TEM)
Parameter imaged: modes of electron microscopy; EELS imaging
Source of contrast: electron scattering
Visualization methods: electron energy loss window
Processing history: unprocessed raw data
description: Multi-tilt EM tomogram of primary human small airway epithelial cell (SAEC) in interphase state. The tomogram refers to the SAEC in figure S7 of the published manuscript: http://science.sciencemag.org/content/357/6349/eaag0025http://science.sciencemag.org/content/357/6349/eaag0025.
DOI: 10.6075/j0p26wt4
title: CIL:7599, Cavia porcellus, hepatocyte. In Cell Image Library

description: Pieces of liver tissue were removed directly from anesthetized animals and immersed in a drop of fixative of 1% osmium tetroxide buffered at pH 7.6 with phosphate buffer. Tissue blocks were embedded in Epon. Sections were stained with uranyl acetate and lead hydroxide. Micrograph was taken at original magnification of 65,000 X with a Siemens Elmiskop I, operating at 60 or 80 kv, with a double condenser, and a 50 µ objective aperture. Digitization process: Lantern slide scanned at 1200 dpi in TIFF format, then reduced to 600 dpi TIFF file (3500 x 3067 pixels) prior to conversion to JPEG2000 format. Original resource provided as a 3.25 x 4 inch lantern slide by George E. Palade; original is in the Palade Collection, University of California, San Diego.
description: This is a view of apical domains of two adjacent hepatocytes in the guinea pig liver, showing the junctional complexes that attach cells to one another. The bile canaliculus (BC) is defined by the cell membranes (CM) of two adjacent liver cells. At the level of the tight junctions (also known as zonula occludens, ZO) the intercellular spaces are sealed, thereby preventing leakage of bile from the canaliculus. Two adherens junctions (also known as zonula adherens, ZA) and two desmosomes (D) are seen distal (relative to the canaliculus) to each tight junction. Glycogen (gly) particles are apparent in the cytoplasm of the liver cells.This was part of the first description of tight junctions and junctional complexes between epithelial cells from many tissues. Identical unlabeled image available as CIL# 7598. Image published as Figure 13 in Farquhar and Palade, 1963.
description: Preparation: osmium tetroxide fixed tissue
Relation to intact cell: microtome-sectioned tissue
Item type: film
Imaging mode: transmission electron microscopy (TEM); illumination by electrons; detection of electrons
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: lead salt; uranyl salt
Processing history: digitized lantern slide
Data qualification: Processed;spatialmeasurements;intensitiesquantitation
DOI: 10.6075/j01j98tr
title: CIL:7662, Opercularia [NCBITaxon:168247], Opercularia coarctata, cell by organism, eukaryotic cell, Eukaryotic Protist, Ciliated Protist. In Cell Image Library

description: High resolution overview of Opercularia coarctata with macronucleus, cytoplasm, and section of the oral area. Specialized rough endoplasmic reticulum with modification into decorated tubules that lie on the surface of myonemes. The composition and function of the decorations have not been determined but they may be calcium pumps or calcium channels. TEM taken on 6/6/69 by R. Allen with Philips 300 operating at 60kV. Neg. 11,800X. The raw film was scanned with an Epson Perfection V750 Pro. This image is suitable for quantitative analysis. Standard glutaraldehyde fixation followed by osmium tetroxide, dehydrated in alcohol and embedded in an epoxy resin. Microtome sections prepared at approximately 75nm thickness. Additional information available at (http://www5.pbrc.hawaii.edu/allen/).
description: Preparation: glutaraldehyde fixed tissue; osmium tetroxide fixed tissue; tissue in epoxy resin embedment; microtome-sectioned tissue
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM); illumination by electrons
Imaging mode: detection of electrons; film
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: stain with broad specificity; osmium tetroxide; uranyl salt; lead salt
Processing history: recorded image; film; unprocessed raw data
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
DOI: 10.6075/j0930sg2
title: CIL:766, Patiria miniata, sperm. In Cell Image Library

description: Phosphorus has a characteristic electron energy loss with an edge at 160 eV. The Zeiss 902 electron microscope permits images to be recorded at different energy losses which can be digitized and processed to yield a net phosphorus image. For nuclear chromatin, phosphorus is primarily located in DNA, allowing its distribution in chromatin fibers to be mapped. Electron energy loss (EELS) imaging is also known as electron spectroscopic imaging (ESI) and electron energy filtering TEM (EFTEM).
Starfish sperm chromatin, which has clearly defined chromatin fibers was fixed, embedded in Lowicryl at low temperature, thin sections prepared and imaged unstained. The 4 grouped images were recorded with a Zeiss 902 energy filtered TEM at 80KV using 5eV windows centered on energy loss valuesof 170, 160, 120 (this image), and 104eV.
description: Preparation: glutaraldehyde fixed tissue; Low temperature embedding
Relation to intact cell: microtome-sectioned tissue
Item type: recorded image
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: modes of electron microscopy; EELS imaging
Source of contrast: electron scattering
Visualization methods: EELS window
Processing history: unprocessed raw data
DOI: 10.60712/si-id352984.1
title: StrainInfo SI-ID 352984.1

description: StrainInfo dataset 352984 about a strain of Microcystis aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id352985.1
title: StrainInfo SI-ID 352985.1

description: StrainInfo dataset 352985 about a strain of Microcystis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id352986.1
title: StrainInfo SI-ID 352986.1

description: StrainInfo dataset 352986 about a strain of Microcystis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id352987.1
title: StrainInfo SI-ID 352987.1

description: StrainInfo dataset 352987 about a strain of Klebsormidium. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id353008.1
title: StrainInfo SI-ID 353008.1

description: StrainInfo dataset 353008 about a strain of Chromochloris zofingiensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id353009.1
title: StrainInfo SI-ID 353009.1

description: StrainInfo dataset 353009 about a strain of Mychonastes homosphaera. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id353010.1
title: StrainInfo SI-ID 353010.1

description: StrainInfo dataset 353010 about a strain of Myrmecia biatorellae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.9vz1wj
title: Occurrence Download

description: A dataset containing 71580 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cerastium glomeratum Thuill."
 ]
}

 The dataset includes 71580 records from 316 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000522-131106143450413/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.