cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/inscriptifact-ouc110846385
title: Persepolis Fortification Anepigraphic Tablet 0311.201, PFAnep 0311.201

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0311.201, PFUT 0311-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on left edge, obverse. ❧ [Physical Object Note:] Left side of tablet broken off, part of right edge. Breakage on upper and bottom edges. Damaged reverse. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110846383
title: Persepolis Fortification Anepigraphic Tablet 0311.201, PFAnep 0311.201

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0311.201, PFUT 0311-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on left edge, obverse. ❧ [Physical Object Note:] Left side of tablet broken off, part of right edge. Breakage on upper and bottom edges. Damaged reverse. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110846410
title: Persepolis Fortification Anepigraphic Tablet 0335.201, PFAnep 0335.201

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0335.201, PFUT 0335-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on obverse, reverse. ❧ [Physical Object Note:] Bottom edge broken off, as well as right edge. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110846351
title: Persepolis Fortification Anepigraphic Tablet 0335.201, PFAnep 0335.201

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0335.201, PFUT 0335-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on obverse, reverse. ❧ [Physical Object Note:] Bottom edge broken off, as well as right edge. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110849828
title: Persepolis Fortification Anepigraphic Tablet 0316.201, PFAnep 0316.201

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0316.201, PFUT 0316-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on left edge, obverse. ❧ [Physical Object Note:] Right edge broken off. (Upper and bottom edges may be reversed)
DOI: 10.15468/dl.aqk9pz
title: Occurrence Download

description: A dataset containing 28708 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Artibeus lituratus",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 28708 records from 429 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010045-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n4pxbd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Scaphopoda)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-70 80,-60 80,-60 90,-70 90,-70 80))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018924-251009101135966/datasets/export for details.
DOI: 10.5281/zenodo.18776893
title: hypsolebias_delucai_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.18776758
title: Processed single-cell RNA-seq data with inflammation treatment used in "Systematic Background Selection with BasCoD Enhances Contrastive Dimension Reduction in Single Cell Genomics"

description: This repository contains the processed single-cell RNA-seq data with inflammation treatment used in the study:Park K., Sun Z., Liao R., Bresnick E.H., Keleş S. Systematic Background Selection with BasCoD Enhances Contrastive Dimension Reduction in Single Cell Genomics.
DOI: 10.5281/zenodo.18776892
title: hypsolebias_delucai_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.18776757
title: Processed single-cell RNA-seq data with inflammation treatment used in "Systematic Background Selection with BasCoD Enhances Contrastive Dimension Reduction in Single Cell Genomics"

description: This repository contains the processed single-cell RNA-seq data with inflammation treatment used in the study:Park K., Sun Z., Liao R., Bresnick E.H., Keleş S. Systematic Background Selection with BasCoD Enhances Contrastive Dimension Reduction in Single Cell Genomics.
DOI: 10.15468/dl.4qkcwd
title: Occurrence Download

description: A dataset containing 1037794 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Nigeria",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Aves, Insecta, Plantae)"
 ]
}

 The dataset includes 1037794 records from 643 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000833-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dhbztt
title: Occurrence Download

description: A dataset containing 188 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.basisofrecord IN ('OBSERVATION', 'MACHINE_OBSERVATION', 'HUMAN_OBSERVATION', 'MATERIAL_SAMPLE', 'MATERIAL_CITATION', 'PRESERVED_SPECIMEN', 'LIVING_SPECIMEN', 'OCCURRENCE')
 AND occurrence."month" IN (1, 2, 3, 4, 12, 11, 10, 9, 7, 6, 5, 8)
 AND occurrence.occurrencestatus = 'PRESENT'
 AND GBIF_STRINGARRAYCONTAINS(occurrence.classifications['d7dddbf4-2cf0-4f39-9b2a-bb099caae36c'], '5285134', TRUE)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND (occurrence.classificationdetails['d7dddbf4-2cf0-4f39-9b2a-bb099caae36c']['specieskey'] &lt;&gt; '' AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 188 records were derived from 237 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000824-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31238702
title: <i>Streptococcus suis</i> Stk1 sensitizes epithelial cells to ferroptosis and exacerbates disruption of the respiratory epithelial barrier

description: <i>Streptococcus suis</i> serotype 2 (SS2), a significant zoonotic pathogen, initiates systemic infection by breaching the respiratory epithelial barrier. Ferroptosis, an iron-dependent form of regulated cell death driven by lipid peroxidation, is increasingly implicated in the pathogenesis of various infectious diseases, yet its role in SS2-induced epithelial barrier dysfunction remains unknown. Here, we demonstrate SS2 infection sensitizes airway epithelial cells to ferroptosis, leading to the accumulation of lipid peroxides, upregulation of the transcriptional repressor Snail1, and subsequent downregulation of intercellular junction proteins. This cascade compromises epithelial integrity and promotes bacterial translocation. Mechanistically, we found SS2 overwhelms the cellular redox defense system and identified bacterial eukaryotic-like serine/threonine kinase 1 (Stk1) as the key mediator of this process. Stk1 directly interacts with host protein Keap1, which stabilizes the Keap1-Nrf2 complex. This stabilization enhances the ubiquitination and subsequent proteasomal degradation of Nrf2, the master regulator of antioxidant response, thereby crippling cell’s ability to neutralize lipid peroxides. In summary, this study unveils a novel virulence mechanism wherein SS2 effector Stk1 promotes Nrf2 degradation to trigger ferroptosis, ultimately leading to the disruption of respiratory epithelial barrier. These findings suggest that inhibiting ferroptosis could represent a promising therapeutic strategy for clinical prevention and treatment of SS2 infections.
DOI: 10.6084/m9.figshare.31238702.v3
title: <i>Streptococcus suis</i> Stk1 sensitizes epithelial cells to ferroptosis and exacerbates disruption of the respiratory epithelial barrier

description: <i>Streptococcus suis</i> serotype 2 (SS2), a significant zoonotic pathogen, initiates systemic infection by breaching the respiratory epithelial barrier. Ferroptosis, an iron-dependent form of regulated cell death driven by lipid peroxidation, is increasingly implicated in the pathogenesis of various infectious diseases, yet its role in SS2-induced epithelial barrier dysfunction remains unknown. Here, we demonstrate SS2 infection sensitizes airway epithelial cells to ferroptosis, leading to the accumulation of lipid peroxides, upregulation of the transcriptional repressor Snail1, and subsequent downregulation of intercellular junction proteins. This cascade compromises epithelial integrity and promotes bacterial translocation. Mechanistically, we found SS2 overwhelms the cellular redox defense system and identified bacterial eukaryotic-like serine/threonine kinase 1 (Stk1) as the key mediator of this process. Stk1 directly interacts with host protein Keap1, which stabilizes the Keap1-Nrf2 complex. This stabilization enhances the ubiquitination and subsequent proteasomal degradation of Nrf2, the master regulator of antioxidant response, thereby crippling cell’s ability to neutralize lipid peroxides. In summary, this study unveils a novel virulence mechanism wherein SS2 effector Stk1 promotes Nrf2 degradation to trigger ferroptosis, ultimately leading to the disruption of respiratory epithelial barrier. These findings suggest that inhibiting ferroptosis could represent a promising therapeutic strategy for clinical prevention and treatment of SS2 infections.
DOI: 10.6084/m9.figshare.31238702.v2
title: <i>Streptococcus suis</i> Stk1 sensitizes epithelial cells to ferroptosis and exacerbates disruption of the respiratory epithelial barrier

description: <i>Streptococcus suis</i> serotype 2 (SS2), a significant zoonotic pathogen, initiates systemic infection by breaching the respiratory epithelial barrier. Ferroptosis, an iron-dependent form of regulated cell death driven by lipid peroxidation, is increasingly implicated in the pathogenesis of various infectious diseases, yet its role in SS2-induced epithelial barrier dysfunction remains unknown. Here, we demonstrate SS2 infection sensitizes airway epithelial cells to ferroptosis, leading to the accumulation of lipid peroxides, upregulation of the transcriptional repressor Snail1, and subsequent downregulation of intercellular junction proteins. This cascade compromises epithelial integrity and promotes bacterial translocation. Mechanistically, we found SS2 overwhelms the cellular redox defense system and identified bacterial eukaryotic-like serine/threonine kinase 1 (Stk1) as the key mediator of this process. Stk1 directly interacts with host protein Keap1, which stabilizes the Keap1-Nrf2 complex. This stabilization enhances the ubiquitination and subsequent proteasomal degradation of Nrf2, the master regulator of antioxidant response, thereby crippling cell’s ability to neutralize lipid peroxides. In summary, this study unveils a novel virulence mechanism wherein SS2 effector Stk1 promotes Nrf2 degradation to trigger ferroptosis, ultimately leading to the disruption of respiratory epithelial barrier. These findings suggest that inhibiting ferroptosis could represent a promising therapeutic strategy for clinical prevention and treatment of SS2 infections.
DOI: 10.6084/m9.figshare.31415621
title: Epiplastic microhabitats for epibenthic organisms: a new inland water frontier for diatoms

description: Plastic pollution is widespread in each type of ecosystems. However, the colonization events of microorganisms on plastics seem to be neglected in inland waters. Therefore, in this study we analyze the possible colonization on the surface (hereafter epiplastic microhabitats) of two typology of plastic supports by diatom community. Specifically, we located 20 supports in expanded polystyrene and 20 in polyethylene terephthalate both floating and dipped (~ 1 m) in a central Italian shallow water pond, in order to evaluate the diachronic colonization of diatoms from November 2019 to August 2020. Our result showed the tendency in colonizing both epiplastic microhabitats without significant differences in number of species; additionally, depth does not appear to affect the number of species. As regard the temporal colonization, the number of species tends to increase over time from autumn-winter to spring-summer in both types of epiplastic microhabitats and depth. Instead, increase in dominance of some species over time has been demonstrated: only a few species keep a high number of individuals compared to the others; therefore, the number of individuals within the species is not uniformly distributed. These results suggest the tendency of diatom community to colonize plastic supports in lentic waters, and this evidence can be very important because artificial supports can increase the surface available for the settlement of the algae community with an increase of productivity and the colonization of new communities of different taxa. Further studies are mandatory to investigate the possible effects on the epiplastic community and the ecological implications in freshwater environments.
DOI: 10.6084/m9.figshare.31415621.v1
title: Epiplastic microhabitats for epibenthic organisms: a new inland water frontier for diatoms

description: Plastic pollution is widespread in each type of ecosystems. However, the colonization events of microorganisms on plastics seem to be neglected in inland waters. Therefore, in this study we analyze the possible colonization on the surface (hereafter epiplastic microhabitats) of two typology of plastic supports by diatom community. Specifically, we located 20 supports in expanded polystyrene and 20 in polyethylene terephthalate both floating and dipped (~ 1 m) in a central Italian shallow water pond, in order to evaluate the diachronic colonization of diatoms from November 2019 to August 2020. Our result showed the tendency in colonizing both epiplastic microhabitats without significant differences in number of species; additionally, depth does not appear to affect the number of species. As regard the temporal colonization, the number of species tends to increase over time from autumn-winter to spring-summer in both types of epiplastic microhabitats and depth. Instead, increase in dominance of some species over time has been demonstrated: only a few species keep a high number of individuals compared to the others; therefore, the number of individuals within the species is not uniformly distributed. These results suggest the tendency of diatom community to colonize plastic supports in lentic waters, and this evidence can be very important because artificial supports can increase the surface available for the settlement of the algae community with an increase of productivity and the colonization of new communities of different taxa. Further studies are mandatory to investigate the possible effects on the epiplastic community and the ecological implications in freshwater environments.
DOI: 10.15468/dl.km2gfm
title: Occurrence Download

description: A dataset containing 97026 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudorasbora parva",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 97026 records from 295 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000841-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.19838.45125
title: Python Codes for Modeling and Visualization: "Simple hurricane model: asymmetry and dynamics" (Mendes et al., 2022)
DOI: 10.3886/e246323
title: PromptTensor Prompt Bank (v1.0.1)

description: PromptTensor Prompt Bank (v1.0.1) is an English prompt dataset for LLM research and prompt-engineering experiments. It contains structured prompts labeled by domain/subdomain/intent, provided in JSONL format for easy loading and filtering.Mirrors/DOIs: Zenodo (doi:10.5281/zenodo.18665254). Additional mirrors: Hugging Face, Kaggle, and GitHub.<br>Canonical page: https://prompttensor.com/datasets/prompttensor-promptbank-v1
description: <pre>Not applicable (non-survey text dataset). Prompts were curated/created and then filtered and deduplicated.</pre>
description: <pre>English-language prompts for LLM research and prompt-engineering tasks.</pre>
.
description: other; Unit of data: one prompt per record (JSONL).Each record includes the prompt text and structured labels (domain/subdomain/intent) to support filtering and benchmarking.
DOI: 10.3886/e246323v1
title: PromptTensor Prompt Bank (v1.0.1)

description: PromptTensor Prompt Bank (v1.0.1) is an English prompt dataset for LLM research and prompt-engineering experiments. It contains structured prompts labeled by domain/subdomain/intent, provided in JSONL format for easy loading and filtering.Mirrors/DOIs: Zenodo (doi:10.5281/zenodo.18665254). Additional mirrors: Hugging Face, Kaggle, and GitHub.<br>Canonical page: https://prompttensor.com/datasets/prompttensor-promptbank-v1
description: <pre>Not applicable (non-survey text dataset). Prompts were curated/created and then filtered and deduplicated.</pre>
description: <pre>English-language prompts for LLM research and prompt-engineering tasks.</pre>
.
description: other; Unit of data: one prompt per record (JSONL).Each record includes the prompt text and structured labels (domain/subdomain/intent) to support filtering and benchmarking.
DOI: 10.15468/dl.cutyju
title: Occurrence Download

description: A dataset containing 168 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mobula hypostoma"
 ]
}

 The dataset includes 168 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000885-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cjhpv6
title: Occurrence Download

description: A dataset containing 539 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Episesarma chentongense"
 ]
}

 The dataset includes 539 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000886-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nq7q6a
title: Occurrence Download

description: A dataset containing 50208 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Spondias"
 ]
}

 The dataset includes 50208 records from 780 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000840-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nnjrcx
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002287-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sl93vu
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002288-150512124619364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vtlin1
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002298-150221044754056/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.