cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.722rx8
title: Occurrence Download

description: A dataset containing 554 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Erysimum gorbeanum Polatschek"
 ]
}

 The dataset includes 554 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0270600-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.by4x1f
title: Occurrence Download

description: A dataset containing 904 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Pusa caspica (Gmelin, 1788)",
 "TaxonKey is Phodopus sungorus (Pallas, 1773)",
 "TaxonKey is Phoenix sylvestris (L.) Roxb.",
 "TaxonKey is Phyllanthus rotundifolius J.G.Klein ex Willd.",
 "TaxonKey is Physalis grisea (Waterf.) M.Martínez",
 "TaxonKey is Physalis nicandroides Schltdl."
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 904 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040448-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cfpemp
title: Occurrence Download

description: A dataset containing 812 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudognaphalium undulatum (L.) Hilliard & B.L.Burtt",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 812 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001895-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e6sfdr
title: Occurrence Download

description: A dataset containing 5552045 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is China"
 ]
}

 The dataset includes 5552045 records from 3098 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0270604-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-41618
title: Redemption tidings, vol. 7, nos. 1-12, Jan.-Dec. 1931

description: [description english/roman)] Issued monthly. "A full gospel magazine for all believers" -- subtitle. Bound with vol. 8-9. Includes Missionary supplement to Redemption tidings in each issue (Jan.-Dec. 1931).
DOI: 10.15468/dl.264n9z
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-78.9183325999999994 40.2913537000000019, -78.9183325999999994 40.2937867300000008, -78.9183325999999994 40.2962197499999988, -78.9183325999999994 40.2982686200000018, -78.9183325999999994 40.3012138599999972, -78.9183325999999994 40.3041590999999997, -78.9165465399999988 40.3041590999999997, -78.9132305400000007 40.3041590999999997, -78.9110623800000042 40.3041590999999997, -78.9083840699999968 40.3041590999999997, -78.9064709900000025 40.3041590999999997, -78.9039197000000030 40.3041590999999997, -78.9039197000000030 40.3013419099999979, -78.9039197000000030 40.2991649900000013, -78.9039197000000030 40.2978844499999980, -78.9039197000000030 40.2958355900000029, -78.9039197000000030 40.2936586699999992, -78.9039197000000030 40.2913537000000019, -78.9071086799999932 40.2913537000000019, -78.9108073000000019 40.2913537000000019, -78.9127203799999961 40.2913537000000019, -78.9148885400000069 40.2913537000000019, -78.9183325999999994 40.2913537000000019))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 32 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0099409-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/gshr-3fzk
title: Measurement of PM mass at Gual Pahari

description: Measurement of PM mass at Gual Pahari
DOI: 10.48597/s4zc-4eeh
title: Aerosol light scattering at Bondville

description: Measurement of Aerosol light scattering at Bondville
DOI: 10.48597/dee2-d9sq
title: Measurement of PM mass at Gual Pahari

description: Measurement of PM mass at Gual Pahari
DOI: 10.48597/xzjw-ak72
title: Measurement of Aerosol light scattering at Bondville

description: Measurement of Aerosol light scattering at Bondville
DOI: 10.15468/dl.4ep6fa
title: Occurrence Download

description: A dataset containing 479731 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Apis mellifera Linnaeus, 1758"
 ]
}

 The dataset includes 479731 records from 910 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0189600-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xjf947
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ochotona alpina (Pallas, 1773))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 136 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063205-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/vv95-7x2s
title: Measurement of Aerosol light scattering at Bondville

description: Measurement of Aerosol light scattering at Bondville
DOI: 10.25549/pcra-c14-41634
title: Redemption tidings, vol. 7, nos. 1-12, Jan.-Dec. 1931

description: [description english/roman)] Issued monthly. "A full gospel magazine for all believers" -- subtitle. Bound with vol. 8-9. Includes Missionary supplement to Redemption tidings in each issue (Jan.-Dec. 1931).
DOI: 10.48597/cnmt-xbvq
title: Measurement of Aerosol light scattering at Bondville

description: Measurement of Aerosol light scattering at Bondville
DOI: 10.15468/dl.gxycmh
title: Occurrence Download

description: A dataset containing 1328 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atherinomorus duodecimalis (Valenciennes, 1835)"
 ]
}

 The dataset includes 1328 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0338275-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6xsq5m
title: Occurrence Download

description: A dataset containing 46580 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Weed and native flora data for the Swan Coastal Plain"
 ]
}

 The dataset includes 46580 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0189607-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-41401
title: Redemption tidings, vol. 6, nos. 1-12, Jan.-Dec. 1930

description: [description english/roman)] Issued monthly. "A full gospel magazine for all believers" -- subtitle. Bound with vol. 5. Includes Missionary supplement to Redemption tidings in each issue (Jan.-Dec. 1930).
DOI: 10.48597/e6ka-63er
title: Measurement of Aerosol light scattering at Bondville

description: Measurement of Aerosol light scattering at Bondville
DOI: 10.15468/dl.gay3tn
title: Occurrence Download

description: A dataset containing 2004 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "TaxonKey is Quercus robur L."
 ]
}

 The dataset includes 2004 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106863-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/r6km-7ggd
title: Measurement of PM mass at Birkenes

description: Measurement of PM mass at Birkenes
DOI: 10.15468/dl.aetwqa
title: Occurrence Download

description: A dataset containing 1134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hyphoderma roseocremeum (Bres.) Donk, Hyphoderma transiens (Bres.) Parmasto, Hyphodontia abieticola (Bourdot & Galzin) J.Erikss.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 1134 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0319931-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/4gpp-9med
title: Measurement of Aerosol light scattering at Bondville

description: Measurement of Aerosol light scattering at Bondville
DOI: 10.48597/p9rq-weeh
title: PM mass at Birkenes

description: Measurement of PM mass at Birkenes
DOI: 10.48597/r3u4-z24v
title: Measurement of Aerosol light scattering at Bondville

description: Measurement of Aerosol light scattering at Bondville
DOI: 10.15468/dl.gasbeh
title: Occurrence Download

description: A dataset containing 95006 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Occurrence evidence"
 ]
 },
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 95006 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0157257-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-41343
title: Redemption tidings, vol. 6, nos. 1-12, Jan.-Dec. 1930

description: [description english/roman)] Issued monthly. "A full gospel magazine for all believers" -- subtitle. Bound with vol. 5. Includes Missionary supplement to Redemption tidings in each issue (Jan.-Dec. 1930).
DOI: 10.48597/8rat-p848
title: Aerosol light scattering at Summit

description: Measurement of Aerosol light scattering at Summit
DOI: 10.48597/unan-jnsv
title: Measurement of PM mass at Birkenes

description: Measurement of PM mass at Birkenes
DOI: 10.48597/qfqt-h5nc
title: Measurement of Aerosol light scattering at Summit

description: Measurement of Aerosol light scattering at Summit
DOI: 10.48597/yzyt-na6n
title: Measurement of PM mass at Birkenes

description: Measurement of PM mass at Birkenes
DOI: 10.15468/dl.uajgbb
title: Occurrence Download

description: A dataset containing 350 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xanthoceras sorbifolia Bunge",
 "HasCoordinate is true",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 350 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063193-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/ca7p-jz7t
title: Measurement of Aerosol light scattering at Summit

description: Measurement of Aerosol light scattering at Summit
DOI: 10.15468/dl.ucpf6n
title: Occurrence Download

description: A dataset containing 216849 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hypnum cupressiforme Hedw., Hypnum jutlandicum Holmen & E.Warncke)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 216849 records from 385 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0319963-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-41477
title: Redemption tidings, vol. 6, nos. 1-12, Jan.-Dec. 1930

description: [description english/roman)] Issued monthly. "A full gospel magazine for all believers" -- subtitle. Bound with vol. 5. Includes Missionary supplement to Redemption tidings in each issue (Jan.-Dec. 1930).
DOI: 10.48597/3zph-ycjg
title: Pm10_mass at Finokalia

description: Measurement of Pm10_mass at Finokalia
DOI: 10.5281/zenodo.15182025
title: [old] Relate selection example

description: This repository contains a fully contained example of running Relate on CEU samples of the 1000 Genomes Project dataset. We include data a few Mb around the LCT gene and construct Relate trees and subsequently compute selection p-values using the module RelateSelection. 

The output is a p-value for every SNP in the dataset. These p-values are computed by first extracting the number of lineages remaining in the tree when the mutation was carried by two lineages. We then compute the probability of a mutation spreading to at least its present-day observed frequency. The p-value therefore quantifies to what extend the mutation has outcompeted other lineages in the tree. We can also condition on other time points in the tree, such as when around half the lineages remaining carry the focal mutation.

Running the scripts

Please download Relate binaries from https://myersgroup.github.io/relate/ and then run the script run.sh included in this repository.
DOI: 10.5281/zenodo.15182026
title: Relate example for quantifying positive selection

description: This repository contains a fully contained example of running Relate on CEU samples of the 1000 Genomes Project dataset. We include data a few Mb around the LCT gene and construct Relate trees and subsequently compute selection p-values using the module RelateSelection. 

The output is a p-value for every SNP in the dataset. These p-values are computed by first extracting the number of lineages remaining in the tree when the mutation was carried by two lineages. We then compute the probability of a mutation spreading to at least its present-day observed frequency. The p-value therefore quantifies to what extend the mutation has outcompeted other lineages in the tree. We can also condition on other time points in the tree, such as when around half the lineages remaining carry the focal mutation.

Running the scripts

Please download Relate binaries from https://myersgroup.github.io/relate/ and then run the script run.sh included in this repository.
DOI: 10.5281/zenodo.15183999
title: [old] Relate selection example

description: This repository contains a fully contained example of running Relate on CEU samples of the 1000 Genomes Project dataset. We include data a few Mb around the LCT gene and construct Relate trees and subsequently compute selection p-values using the module RelateSelection. 

The output is a p-value for every SNP in the dataset. These p-values are computed by first extracting the number of lineages remaining in the tree when the mutation was carried by two lineages. We then compute the probability of a mutation spreading to at least its present-day observed frequency. The p-value therefore quantifies to what extend the mutation has outcompeted other lineages in the tree. We can also condition on other time points in the tree, such as when around half the lineages remaining carry the focal mutation.

Running the scripts

Please download Relate binaries from https://myersgroup.github.io/relate/ and then run the script run.sh included in this repository.
DOI: 10.15468/dl.f7ag79
title: Occurrence Download

description: A dataset containing 460 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Chionanthus trichotomus (Vell.) P.S.Green, Linociera arborea Eichler, Linociera glaziovii Gilg, Linociera glaziovii var. lanceolata Gilg, Linociera glomerata Pohl, Mayepea pohliana Kuntze, Minutia trichotoma Vell., Mayepea arborea (Eichler) Kuntze)"
 ]
}

 The dataset includes 460 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016692-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wrseno
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Haliotis iris Gmelin, 1791",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 115 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033059-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mwpf76
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Helcogramma ellioti (Herre, 1944)",
 "Country is India"
 ]
}

 The dataset includes 23 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032302-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5mvdno
title: Occurrence Download

description: A dataset containing 192 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Synodontidae",
 "Country is India"
 ]
}

 The dataset includes 192 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032298-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9nhw4n
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Octopus sinensis d'Orbigny, 1834",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016693-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jujx2c
title: Occurrence Download

description: A dataset containing 1120 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Panthera onca (Linnaeus, 1758)",
 "TaxonKey is Leopardus pardalis (Linnaeus, 1758)"
 ]
 },
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1120 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053539-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fxfclf
title: Occurrence Download

description: A dataset containing 258 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fungi",
 "Country is Togo"
 ]
}

 The dataset includes 258 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034432-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uxsvhe
title: Occurrence Download

description: A dataset containing 258 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fungi",
 "Country is Togo"
 ]
}

 The dataset includes 258 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034425-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.