cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19665471
title: Data from: FunAndes – A functional trait database of Andean plants

description: We introduce the FunAndes database, a compilation of functional trait data for the Andean flora spanning six countries. FunAndes contains data on 24 traits across 2,694 taxa, for a total of 105,466 entries. The database features plant-morphological attributes including growth form, and leaf, stem, and wood traits measured at the species or individual level, together with geographic metadata (i.e., coordinates and elevation). FunAndes follows the field names, trait descriptions and units of measurement of the TRY database. It is currently available in open access in the FIGSHARE data repository, and will be part of TRY’s next release. Open access trait data from Andean plants will contribute to ecological research in the region, the most species rich terrestrial biodiversity hotspot.
DOI: 10.6084/m9.figshare.19809052
title: Strong ground motion datasets of the Mw7.8 2015 Gorkha earthquake aftershocks obtained at the seismograph array in the Kathmandu Valley, Nepal

description: These datasets contain the strong ground motion for 18 aftershocks (5.0 &lt; <em>M</em> &lt; 7.3) of the <em>M</em><sub>w</sub> 7.8 2015 Gorkha earthquake collected at the seismograph array in the Kathmandu Valley, Nepal. If you use this data, please cite the following paper: Michiko Shigefuji, Nobuo Takai, Subeg Bijukchhen, Masayoshi Ichiyanagi, Sudhir Rajaure, Megh Raj Dhital, Lalu Prasad Paudel, Tsutomu Sasatani. Strong ground motion data of the 2015 Gorkha Nepal earthquake sequence in the Kathmandu Valley. <em>Sci. Data</em> <strong>9</strong>, 513 (2022) . https://doi.org/10.1038/s41597-022-01634-6 <br> <br> <br>
DOI: 10.6084/m9.figshare.20527419
title: Supplementary Material for: Cognitive Screening via Comprehensive Geriatric Assessment of Older Patients for the Risk Factors of Hospital Revisit/Readmission after Emergency Department Visit at 3-Month Follow-Up

description: <b><i>Introduction:</i></b> Cognitive impairment (COIM) is a major challenge for healthcare systems and is associated with an increased risk of adverse outcomes in older people visiting emergency departments (EDs). Owing to global aging, both cognitive screening and comprehensive geriatric assessment (CGA) application in ED settings are developing areas of geriatric emergency medicine. Meanwhile, the association between clinical outcomes of COIM; cognitive impairment, no dementia (CIND); and dementia in the ED could be better investigated. Our study aims to identify individuals with COIM from older patients in the ED via CGA and to describe the association of CIND and dementia with prognosis in ED visits. <b><i>Methods:</i></b> A prospective cross-sectional study was conducted in the ED of the Taipei Veterans General Hospital, a medical center located in Taipei, Taiwan, from August 2018 to November 2020. Patients aged ≥75 years with and without COIM were compared using data obtained from the CGAs conducted by trained nurses. <b><i>Results:</i></b> A total of 823 older patients were enrolled in the study and underwent CGA. Of these, 463 (56.3%) were diagnosed with COIM, of which 292 (35.5%) were diagnosed with dementia; and 171 (20.8%), CIND. Between the no-COIM and COIM groups, the COIM group had a higher rate of hospital admission (<i>p</i> = 0.002) and mortality at 3 months (<i>p</i> &lt; 0.05). Among the no-COIM, CIND, and dementia groups, ED disposition (<i>p</i> = 0.001) and the rate of revisit/readmission (<i>p</i> &lt; 0.05) showed significant differences. In particular, the dementia group had a significantly higher rate of revisit/readmission as compared to the CIND group among the three groups. <b><i>Discussion/Conclusion:</i></b> Older patients with COIM had a higher rate of hospital admission and mortality at the 3-month follow-up than older patients without COIM. Among the no-COIM, CIND, and dementia groups, patients with dementia had significantly increased risks of hospital admission and revisit/readmission. The early detection of COIM, and even dementia, could help ED physicians formulate strategies with geriatric specialists to improve mortality outcomes and revisit/readmission.
DOI: 10.6084/m9.figshare.20529015
title: Supplementary Material for: Perceived Stress and Coping Strategies among Nursing Students during the COVID-19 Pandemic: A Systematic Review

description: <b><i>Background and Objective:</i></b> Stress is common among nursing students, especially during COVID-19, because of direct contact with patients, so they need to cope with the stressors. The aim of this systematic review was to assess the level of perceived stress and coping strategies by nursing students during the COVID-19 pandemic. <b><i>Material and Methods:</i></b> Databases such as MEDLINE, PubMed, ScienceDirect, Cochrane Library, and Web of Science were searched using keywords. The authors used keywords (perceived stress, coping strategies or resilience, and nursing students). The language was restricted to English. The studies, conducted between December 2019 and December 2021, were included. The full articles were checked for eligibility. The reference manager software EndNote X4 was used for sorting and managing studies. This systematic review was registered on PROSPERO with a number: CRD42021267791. <b><i>Results:</i></b> Five studies were included in this review: the first study, from the Philippines, showed that levels of stress and coping strategies were estimated to be 79% and 76.8%, respectively; the second study, from Saudi Arabia, found that the rate of stress among nursing students was 30.9% with several strategies for coping, while the other study from Saudi Arabia showed that the stress level is 1.32 (low stress) and 1.95 (moderate stress) with different coping strategies (avoidance 1.47, problem solving 2.09, stay optimistic 2.06, and transference 1.87); the fourth study from the USA showed that the rate of stress is high 24.7%, with high levels of resilience among nursing students; and the fifth study showed that the rate of stress is 20.94 in the UK and 21.54 in China, with a resilience of 26.70 in the UK and 25.18 in China. <b><i>Conclusion:</i></b> The current systematic review showed that nursing students have a high level of stress in all included countries (the Philippines, Saudi Arabia, the USA, the UK, and China), and they developed appropriate coping strategies to face the situation.
DOI: 10.7295/w9cil54845
title: CIL:54845, Danio rerio, Whole larva
DOI: 10.7295/w9cil54848
title: CIL:54848, Danio rerio, Whole larva
DOI: 10.5066/p9mm82ur
title: Summary of proposed changes to geologic inputs for the U.S. National Seismic Hazard Model (NSHM) 2023, version 1.0

description: This data release documents proposed updates to geologic inputs (faults) for the upcoming 2023 National Seismic Hazard Model (NSHM). This version (1.0) conveys differences between 2014 NSHM fault sources and those recently released in the earthquake geology inputs for the U.S. National Seismic Hazard Model (NSHM) 2023, version 1.0 data release by Hatem et al. (2021). A notable difference between the 2014 and 2023 datasets is that slip rates are provided at points for 2023 instead of generalized along the entire fault section length as in 2014; consequently, slip rates are not provided for fault sections in the draft 2023 dataset. Geospatial data (shapefile, kml and geojson) are provided in this data release with each fault distinguished as either ?addition? for newly added faults, "revised" for faults that have undergone geometry changes, or "no change" for fault geometries that have remained the same as in the 2014 NSHM.
DOI: 10.6084/m9.figshare.14741508
title: Factors influencing COVID-19 vaccine acceptance in Indonesia: An adoption of Technology Acceptance Model (TAM)

description: Data of the submission to F1000Reseach entitle Factors influencing COVID-19 vaccine acceptance in Indonesia: An adoption of Technology Acceptance Model (TAM) submitted by Fururohman et al from Institut Teknologi Bandung, Indonesia
DOI: 10.6084/m9.figshare.15029001
title: Bostjancic_et_al_Data_set_2_Data_note

description: Raw and post pre-processing Illumina sequence data statistics for the noble crayfish and the marbled crayfish RNA sequencing datasets
DOI: 10.6084/m9.figshare.15031776
title: Bostjancic_et_al_Data_set_8_Data_note.pdf

description: Detailed description of the applied materials and methods.
DOI: 10.6084/m9.figshare.20129684
title: Supplementary Material for: Utilization of Cystatin C in the Outpatient Setting

description: <b><i>Introduction:</i></b> Serum creatinine is the traditional biomarker for estimating glomerular filtration rate (eGFR). Cystatin C is an alternative biomarker for which estimating equations exist. The use of cystatin C testing, and the interrelationships among the recently revised Chronic Kidney Disease Epidemiology (CKD-EPI) 2021 estimating equations, was evaluated in a national outpatient laboratory dataset. <b><i>Methods:</i></b> Cystatin C results reported on adults between November 2011 and June 2018 by Laboratory Corporation of America Holdings were examined, with classification of ordering providers and diagnostic codes. Updated eGFR results were calculated using the CKD-EPI 2021 equations for each sample with both cystatin C and creatinine values available. The Spearman correlation coefficients were calculated. Reclassification at clinically relevant cut-off values was examined. <b><i>Results:</i></b> There were 87,803 serum cystatin C levels among 55,360 patients; mean age 58 ± 17 years; 50% women. Cystatin C usage increased over time and was ordered for many indications. Among 73,367 samples with simultaneous creatinine and cystatin C, <i>r</i> = 0.84 between eGFR-creatinine and eGFR-cystatin. Correlations of eGFR-creatinine, eGFR-cystatin, and the averaged result of the two equations to the new combined equation were <i>r</i> = 0.94, <i>r</i> = 0.97, and <i>r</i> = 0.998, respectively (<i>p</i> &lt; 0.001 for all). Use of combined/averaged equations tended to result in a higher eGFR and upclassification, compared to eGFR-creatinine. <b><i>Conclusion/Discussion:</i></b> Use of Cystatin C is increasing and has moved beyond the nephrology community and the original indications from the 2012 KDIGO guidelines. Community utilization of cystatin C measurement is likely to expand, and understanding of the relationships between estimating equations will help clinicians optimize their use in the outpatient setting.
DOI: 10.6084/m9.figshare.20509005
title: Supplementary Material for: Cytogenetic Mapping of Cattle BAC Probes for the Hypothetical Ancestral Karyotype of the Family Cervidae

description: Cervids are characterized by their greatest karyotypic diversity among mammals. A great diversity of chromosome numbers in notably similar morphological groups leads to the existence of several complexes of cryptic species and taxonomic uncertainties. Some deer lineages, such as those of Neotropical deer, stand out for a rapid chromosomal reorganization and intraspecific chromosome polymorphisms, which have not been properly explored yet. For that reason, we contribute to the study of deer karyotype diversity and taxonomy by producing and characterizing new molecular cytogenetic markers for the gray brocket deer (<i>Subulo gouazoubira</i>), a deer species that retained the hypothetical ancestral karyotype of Cervidae. We used bacterial artificial chromosome (BAC) clones derived from the cattle genome (<i>Bos taurus</i>) as markers, which were hybridized on <i>S. gouazoubira</i> metaphase chromosomes. In total, we mapped 108 markers, encompassing all gray brocket deer chromosomes, except the Y chromosome. The detailed analysis of fluorescent in situ hybridization results showed 6 fissions and 1 fusion as interchromosomal rearrangements that have separated cattle and gray brocket deer karyotypes. Each group of BAC probes derived from bovine chromosome pairs 1, 2, 5, 6, 8, and 9 showed hybridization signals on 2 different chromosomes, while pairs 28 and 26 are fused in tandem in a single acrocentric chromosome in <i>S. gouazoubira</i>. Furthermore, the BAC markers detected the occurrence of intrachromosomal rearrangements in the <i>S. gouazoubira</i> chromosomes homologous to pair 1 and the X chromosome of cattle. We present a karyotypic map of the 108 new markers, which will be of great importance for future karyotypic evolution studies in cervids and, consequently, help in their conservation and taxonomy resolution.
DOI: 10.5281/zenodo.6519158
title: Tweezer-programmable 2D quantum walks in a Hubbard-regime lattice

description: Accompanying data and code for<em> </em><em>Tweezer-programmable 2D quantum walks in a Hubbard-regime lattice</em>.
DOI: 10.5281/zenodo.6675912
title: Dataset: Halving of Swiss glacier volume since 1931 observed from terrestrial image photogrammetry

description: This is supplementary data for the article currently in review for The Cryosphere, titled "Halving of Swiss glacier volume since 1931 observed from terrestrial image photogrammetry". See the preprint here
DOI: 10.5281/zenodo.6903521
title: TOMCAT model data & IASI satellite data of O3, CO, H2O, CH4 and OH/derived OH for 2010 and 2017

description: Monthly mean data of ozone (O3), carbon monoxide (CO), water vapour (H2O), methane (CH4) and the hydroxyl radical (OH) for 2010 and 2017. Model data is from the 3D chemical transport model TOMCAT (Chipperfield, 2006). Satellite observations are from the Infrared Atmospheric Sounding Interferometer (IASI) on the MetOp-A satellite and retrieved using schemes developed by the Rutherford Appleton Laboratory (RAL). The Ch4 is from RAL's CH4 retrieval scheme (Siddans et al. 2020) and the O3, CO and H2O retrievals are from the extended version of RAL’s Infrared and Microwave Sounding (IMS-extended) scheme (Pope et al. 2021). Full description of the data can be found in Pimlott et al. (2022) (preprint: https://doi.org/10.5194/acp-2022-79) which has now been accepted for publication in ACP.
description: {"references": ["Siddans, R., Knappett, D., Kerridge, B., Latter, B., and Waterfall, A.: STFC RAL methane retrievals from IASI on 30 board MetOp-A, version 2.0, CEDA Archive [data set], https://doi.org/10.5285/f717a8ea622f495397f4e76f777349d1, 2020.", "Chipperfield, M. P.: New version of the TOMCAT/SLIMCAT offline chemical transport model: Intercomparison of stratospheric tracer experiments, Q. J. R. Meteorol. Soc., 132, 1179\u20131203, https://doi.org/10.1256/qj.05.51, 2006.", "Pope, R. J., Kerridge, B. J., Siddans, R., Latter, B. G., Chipperfield, M. P., Arnold, S. R., Ventress, L. J., Pimlott, M. A., Graham, A. M., Knappett, D. S., and Rigby, R.: Large enhancements in southern hemisphere satellite-observed trace gases due to the 2019/2020 Australian wildfires, J. Geophys. Res. Atmos.,126, e2021JD034892, https://doi.org/10.1029/2021jd034892, 2021"]}
DOI: 10.5281/zenodo.7005320
title: Supplementary files for paper: "Design and fabrication of an electrostatic precipitator for infrared spectroscopy" in Atmospheric Measurement Techniques, 2022.

description: File of absorbance spectra and hypothetical thickness for each sample. MATLAB function to perform clean crystal spectrum subtraction and baseline correction (described in the paper).
DOI: 10.5281/zenodo.854730
title: Basic Graben Geomodeller Model And Relevant Mcue Outputs

description: Companion dataset to the paper:

<em>Monte Carlo Simulations for Uncertainty Estimation in 3D Geological Modeling, A Guide for Disturbance Distribution Selection and Parameterization, </em>Evren Pakyuz-Charrier, Mark Lindsay, Vitaliy Ogarko, Jeremie Giraud, Mark Jessell

This dataset contains three archives pertaining to Monte Carlo Uncertainty Estimation (MCUE) in implicit 3D geological models:


	<strong><em>Graben_base.7z</em></strong> is a GeoModeller three dimensional model of the Mansfield syncline area (Victoria, Australia). This model is natively available in every GeoModeller install under the name of "Tutorial case study H".
	<strong><em>MCUE_Graben_nopoletransform.7z</em></strong> is the MCUE output for non pole transfomed foliations.
	<strong><em>MCUE_Graben_poletransform.7z</em></strong> is the MCUE output for non transfomed foliations.


In the output archive files:


	xml files are the GeoModeller project saves, these can be opened with Intrepid's free viewer for GeoModeller 3.3 3.4 (available @: http://www.intrepid-geophysics.com/ig/index.php?page=geomodeller-update)
	.vo, .isi and .vop1 files are the lithological voxet exports in binary GOCAD format, these can be opened with the aforementionned viewer or Geocando (available @: https://sourceforge.net/projects/geocando)
	.vtk files are the MCUE uncertainty indexes outputs, these can be opened with Paraview (available @: https://www.paraview.org/download)
	.csv file is the MCUE probabilistic model output, it can be opened with any text editor /spreadsheet
DOI: 10.6084/m9.figshare.20046821
title: Supplementary Material for: Initial eGFR Changes with Ertugliflozin and Associations with Clinical Parameters: Analyses from the VERTIS CV Trial

description: <b><i>Introduction:</i></b> Using data from the ertugliflozin cardiovascular outcomes trial in patients with type 2 diabetes mellitus (VERTIS CV; NCT01986881), associations between the initial estimated glomerular filtration rate (eGFR) “dip” with eGFR slope, glucosuria/natriuresis-related measures, and safety were investigated. <b><i>Methods:</i></b> Patients were categorized into tertiles based on change in eGFR at week 6: &gt;+1.00 mL/min/1.73 m<sup>2</sup> (tertile 1), &gt;−5.99 and ≤+1.00 (tertile 2), and ≤−6.00 (tertile 3). eGFR slope after week 6 and week 18 was assessed by tertile. Glucosuria/natriuresis-related measures were also determined. Adverse events (AEs) were analyzed in the acute (baseline–week 6) and chronic periods (week 6–30 days after last dose of trial medication). <b><i>Results:</i></b> In the ertugliflozin group, chronic eGFR slopes (95% CI, mL/min/1.73 m<sup>2</sup>/year; weeks 6–156) were −0.76 (−1.03, −0.50), −0.29 (−0.51, −0.07), and −0.05 (−0.26, 0.17) in tertiles 1, 2, and 3, respectively (<i>p</i> value &lt;0.001), and approximately −1.5 mL/min/1.73 m<sup>2</sup>/year across tertiles in the placebo group (<i>p</i> value = 0.79). At week 18, least squares mean (LSM) changes from baseline in glycated hemoglobin (%) were −0.77, −0.71, and −0.67 in tertiles 1, 2, and 3, respectively, in the ertugliflozin group; a similar tertile-associated trend was observed for uric acid. At week 18, LSM changes from baseline in hematocrit (%) were 2.07, 2.33, and 2.55 in tertiles 1, 2, and 3, respectively, in the ertugliflozin group; similar tertile-associated trends were observed for blood pressure. All <i>p</i><sub>interaction</sub> values were &lt;0.0001 for glucosuria- and natriuresis-related measures. Kidney-related AEs were reported more frequently in tertiles 3 and 2 in the chronic period for both placebo- and ertugliflozin-treated groups. In both periods and in all tertiles, incidences of AEs did not differ between placebo- and ertugliflozin-treated groups. <b><i>Conclusion:</i></b> With ertugliflozin, the tertile with the largest initial dip in eGFR had a slower rate of chronic eGFR decline. Initial eGFR changes were associated with changes in both glucosuria- and natriuresis-related measures.
DOI: 10.6084/m9.figshare.20236845
title: Supplementary Material for: Fetal Echocardiographic Predictors of Postnatal Surgical Strategies in Critical Pulmonary Stenosis or Atresia with Intact Ventricular Septum: A Meta-Analysis

description: Background: Critical pulmonary stenosis or atresia with intact ventricular septum (PSAIVS) may be managed either by biventricular repair or univentricular palliation. This systematic review and meta-analysis aims to synthesize the evidence for the role of fetal echocardiography in predicting the postnatal treatment pathway. Methods: PubMed/MEDLINE, CINHAL, Cochrane Library, Academic Search Complete, Web of Science, and Trip Pro were searched for observational studies published before July 2021. Random-effects meta-analysis was performed to identify factors associated with biventricular repair. Results: Eleven individual studies published between 2006 and 2021, including a total of 285 participants (159 biventricular repair; 126 univentricular palliation), met our eligibility criteria. The pooled estimated prevalence of biventricular repair among patients with PSAIVS was 55.6% (95% confidence interval 48.5-62.5%). Those who underwent biventricular repair had greater right to left ventricle (RV/LV) and tricuspid to mitral valve (TV/MV) dimension ratios, greater TV z score, and longer TV inflow duration / cardiac cycle length by fetal echocardiography. They were also more likely to have significant tricuspid regurgitation, and less likely to have ventriculo-coronary connections (VCC). Conclusions: Commonly obtained fetal echocardiographic measurements have strong associations with treatment pathway choice for patients with PSAIVS. Greater RV growth appears to favor biventricular repair, whereas patients with VCC almost invariably undergo univentricular palliation. Future studies should aim to establish how these fetal echocardiographic parameters might predict outcomes for the two treatment pathways.
DOI: 10.6084/m9.figshare.20437134.v4
title: Li, J., Effects of OH radical and SO2 concentrations on photochemical reactions of mixed anthropogenic organic gases

description: Original data have been included
DOI: 10.6084/m9.figshare.20496564
title: Supplementary Material for: Ablation Surgeries for Treatment-Resistant Depression: A Meta-Analysis and Systematic Review of Reported Case Series

description: <b><i>Background and Objectives:</i></b> Ablative lesion procedures remain as the last option in treatment of refractory depression. Contemporary ablative psychosurgeries involve producing lesions in the anterior limb of the internal capsule (bilateral anterior capsulotomy – BAC), the supragenual anterior cingulate gyrus and cingulum (bilateral anterior cingulotomy – BACING), and subgenual anterior cingulate gyrus and subcortical orbitofrontal white matter (bilateral subcaudate tractotomy – BST). A combination of BACING and BST is known as limbic leukotomy (bilateral limbic leukotomy – BLL). All procedures claim some success, but cohorts are small, depression assessment instruments differ, and inclusion and outcome criteria and follow-up duration vary. In some cohorts, more than one type of surgery was performed in several patients, further confounding interpreting the available data. Current evidence is equivocal on which surgical target works best. <b><i>Method and Aim:</i></b> This systematic review and meta-analysis using the Preferred Reporting Items for Systematic Reviews and Meta-Analysis (PRISMA) standard on published cohorts was conducted to review and identify which is the best standalone ablative procedure for treatment-resistant depression (TRD) based on response rate (event rate) and adverse-effect profile using the Comprehensive Meta-Analysis software. <b><i>Results and Conclusion:</i></b> As a standalone neurosurgical procedure, we found that BAC appears to be the most effective and safest of all the ablative targets for TRD. A major limitation of this conclusion is the paucity of published case series where sample sizes are small and all are open label.
DOI: 10.6084/m9.figshare.20501796.v1
title: MCM datasets

description: MCM datasets