cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8186838
title: coelogynopora_nodosa_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.8023745
title: An assessment of acd_lotus for the structural dereplication of natural products using 13C NMR spectroscopy data.

description: A method that relies on carbon-13 nuclear magnetic resonance (NMR) spectroscopy, elaborated in earlier works of the author's research group, requires the availability of a dedicated database that establishes relationships between chemical structures, biological and chemical taxonomy, and spectroscopy. The construction of such a database, called acd_lotus, was reported earlier and its usefulness was only illustrated by three examples. This dataset provides the results of structure searches carried out starting from 58 carbon-13 NMR data sets recorded on compounds selected in the metabolomics section of BMRB, the biological magnetic resonance bank.
description: This data set constitutes the Supplementary material of a preprint deposited in ChemRXiv by Jean-Marc Nuzillard, entitled "Identification of known natural products by querying a carbon-13 nuclear magnetic resonance database — an assessment".
DOI: 10.5281/zenodo.8109828
title: An assessment of acd_lotus for the structural dereplication of natural products using 13C NMR spectroscopy data.

description: A method that relies on carbon-13 nuclear magnetic resonance (NMR) spectroscopy, elaborated in earlier works of the author's research group, requires the availability of a dedicated database that establishes relationships between chemical structures, biological and chemical taxonomy, and spectroscopy. The construction of such a database, called acd_lotus, was reported earlier and its usefulness was only illustrated by three examples. This dataset provides the results of structure searches carried out starting from 58 carbon-13 NMR data sets recorded on compounds selected in the metabolomics section of BMRB, the biological magnetic resonance bank. Correction in the JSON file of ascochitin. Addition of a CSV file according to Schymanski and Bolton for the description of the selected compounds.
description: This data set constitutes the Supplementary material of a preprint deposited in ChemRXiv by Jean-Marc Nuzillard, entitled "Identification of known natural products by querying a carbon-13 nuclear magnetic resonance database — an assessment".
DOI: 10.5281/zenodo.8179438
title: An assessment of acd_lotus for the structural dereplication of natural products using 13C NMR spectroscopy data.

description: A method that relies on carbon-13 nuclear magnetic resonance (NMR) spectroscopy, elaborated in earlier works of the author's research group, requires the availability of a dedicated database that establishes relationships between chemical structures, biological and chemical taxonomy, and spectroscopy. The construction of such a database, called acd_lotus, was reported earlier and its usefulness was only illustrated by three examples. This dataset provides the results of structure searches carried out starting from 58 carbon-13 NMR data sets recorded on compounds selected in the metabolomics section of BMRB, the biological magnetic resonance bank. Correction in the JSON file of ascochitin. Addition of a CSV file according to Schymanski and Bolton for the description of the selected compounds. Better PNG drawings for compounds 28, 38, 46, and 57.
description: This data set constitutes the Supplementary material of a preprint deposited in ChemRXiv by Jean-Marc Nuzillard, entitled "Identification of known natural products by querying a carbon-13 nuclear magnetic resonance database — an assessment".
DOI: 10.5281/zenodo.8023744
title: An assessment of acd_lotus for the structural dereplication of natural products using 13C NMR spectroscopy data.

description: A method that relies on carbon-13 nuclear magnetic resonance (NMR) spectroscopy, elaborated in earlier works of the author's research group, requires the availability of a dedicated database that establishes relationships between chemical structures, biological and chemical taxonomy, and spectroscopy. The construction of such a database, called acd_lotus, was reported earlier and its usefulness was only illustrated by three examples. This dataset provides the results of structure searches carried out starting from 58 carbon-13 NMR data sets recorded on compounds selected in the metabolomics section of BMRB, the biological magnetic resonance bank. Correction in the JSON file of ascochitine. Addition of a CSV file according to Schymanski and Bolton for the description of the selected compounds. Better PNG drawings for compounds 28, 38, 46, and 57. Better PNG drawing for compounds 7 and 26.
description: This data set constitutes the Supplementary material of a preprint deposited in ChemRXiv by Jean-Marc Nuzillard, entitled "Use of carbon-13 NMR to identify known natural products by querying a nuclear magnetic resonance database— an assessment".
DOI: 10.5281/zenodo.8185820
title: An assessment of acd_lotus for the structural dereplication of natural products using 13C NMR spectroscopy data.

description: A method that relies on carbon-13 nuclear magnetic resonance (NMR) spectroscopy, elaborated in earlier works of the author's research group, requires the availability of a dedicated database that establishes relationships between chemical structures, biological and chemical taxonomy, and spectroscopy. The construction of such a database, called acd_lotus, was reported earlier and its usefulness was only illustrated by three examples. This dataset provides the results of structure searches carried out starting from 58 carbon-13 NMR data sets recorded on compounds selected in the metabolomics section of BMRB, the biological magnetic resonance bank. Correction in the JSON file of ascochitine. Addition of a CSV file according to Schymanski and Bolton for the description of the selected compounds. Better PNG drawings for compounds 28, 38, 46, and 57. Better PNG drawing for compound 7.
description: This data set constitutes the Supplementary material of a preprint deposited in ChemRXiv by Jean-Marc Nuzillard, entitled "Identification of known natural products by querying a carbon-13 nuclear magnetic resonance database — an assessment".
DOI: 10.5281/zenodo.8186827
title: An assessment of acd_lotus for the structural dereplication of natural products using 13C NMR spectroscopy data.

description: A method that relies on carbon-13 nuclear magnetic resonance (NMR) spectroscopy, elaborated in earlier works of the author's research group, requires the availability of a dedicated database that establishes relationships between chemical structures, biological and chemical taxonomy, and spectroscopy. The construction of such a database, called acd_lotus, was reported earlier and its usefulness was only illustrated by three examples. This dataset provides the results of structure searches carried out starting from 58 carbon-13 NMR data sets recorded on compounds selected in the metabolomics section of BMRB, the biological magnetic resonance bank. Correction in the JSON file of ascochitine. Addition of a CSV file according to Schymanski and Bolton for the description of the selected compounds. Better PNG drawings for compounds 28, 38, 46, and 57. Better PNG drawing for compounds 7 and 26.
description: This data set constitutes the Supplementary material of a preprint deposited in ChemRXiv by Jean-Marc Nuzillard, entitled "Use of carbon-13 NMR to identify known natural products by querying a nuclear magnetic resonance database— an assessment".
DOI: 10.5281/zenodo.8148589
title: ARMOR C-Band Radar Data for 2008-04-11

description: This data is provided as part of the AMS Radar Conference (2023) Open Radar Course. The data is originally provided by Dr. Larry Carey at the University of Alabama Huntsville. The data is gridded reflectivity on April 11th, 2008.
DOI: 10.5519/qd.bmi11hw5
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (66 records)
DOI: 10.5281/zenodo.8186821
title: vannuccia_rotundouncinata_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.8186820
title: vannuccia_rotundouncinata_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.8185065
title: To Preprint or Not to Preprint: A Global Researcher Survey

description: This data set contains the results of a survey about researchers’ adoption of and attitudes toward preprinting. The survey respondents are authors of journal articles published in 2021 and early 2022 and indexed in the Web of Science database. The questions in the survey are grouped into three sections: adoption of preprinting, attitudes toward preprinting, and demographic questions. The Word document contains the survey form. The Excel spreadsheet contains the raw survey data. Free-text responses are not included in the spreadsheet because they may reveal sensitive information. For more information about this data set, please see the paper "To Preprint or Not to Preprint: A Global Researcher Survey" by Rong Ni and Ludo Waltman. This paper will be published soon.
DOI: 10.5281/zenodo.8170966
title: DADA2 formatted Silva SSU taxonomic training data (Silva version 138.1) with emended description of the genus Lactobacillus Beijerinck 1901

description: These training fasta files are derived from the Silva 138.1 prokaryotic SSU taxonomic training data formatted for DADA2 (from https://zenodo.org/record/4587955). The species assignment file contains changes in species names according to Zheng et al. 2020 based on data from Lactotax (file 2023_05_30.xlsx). The script in R for making changes in species names is in the silva.R file. <br> Please cite one or both of the Silva references, the DADA2 paper (reference below), and the Zenodo record for this specific version in your Methods or published source code to record the specific taxonomic database files used in your analysis.
description: {"references": ["Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Gl\u00f6ckner FO (2013) The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucl. Acids Res. 41 (D1): D590-D596.", "Yilmaz P, Parfrey LW, Yarza P, Gerken J, Pruesse E, Quast C, Schweer T, Peplies J, Ludwig W, Gl\u00f6ckner FO (2014) The SILVA and \"All-species Living Tree Project (LTP)\" taxonomic frameworks. Nucl. Acids Res. 42:D643-D648.", "Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJA, Holmes SP. 2016. DADA2: High-resolution sample inference from Illumina amplicon data. Nat Methods 13:581\u2013583. doi:10.1038/nmeth.3869."]}
DOI: 10.5281/zenodo.8170965
title: DADA2 formatted Silva SSU taxonomic training data (Silva version 138.1) with emended description of the genus Lactobacillus Beijerinck 1901

description: These training fasta files are derived from the Silva 138.1 prokaryotic SSU taxonomic training data formatted for DADA2 (from https://zenodo.org/record/4587955). The species assignment file contains changes in species names according to Zheng et al. 2020 based on data from Lactotax (file 2023_05_30.xlsx). The script in R for making changes in species names is in the silva.R file. <br> Please cite one or both of the Silva references, the DADA2 paper (reference below), and the Zenodo record for this specific version in your Methods or published source code to record the specific taxonomic database files used in your analysis.
description: {"references": ["Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Gl\u00f6ckner FO (2013) The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucl. Acids Res. 41 (D1): D590-D596.", "Yilmaz P, Parfrey LW, Yarza P, Gerken J, Pruesse E, Quast C, Schweer T, Peplies J, Ludwig W, Gl\u00f6ckner FO (2014) The SILVA and \"All-species Living Tree Project (LTP)\" taxonomic frameworks. Nucl. Acids Res. 42:D643-D648.", "Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJA, Holmes SP. 2016. DADA2: High-resolution sample inference from Illumina amplicon data. Nat Methods 13:581\u2013583. doi:10.1038/nmeth.3869."]}
DOI: 10.6084/m9.figshare.23775711
title: Data Phase 3 Experiment.sav

description: Dataset of preregistered experiment https://doi.org/10.17605/OSF.IO/Q5UTN <br> Published in Boerman, S.C., Rozendaal, E., & Van Reijmersdal, E.A. (2023). The development and testing of a pictogram signaling advertising in online videos. <em>International Journal of Advertising</em>
DOI: 10.5281/zenodo.8186862
title: rhynchotus_rufescens_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.8186861
title: rhynchotus_rufescens_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.8029926
title: FESOM-REcoM model data: A regime shift on Weddell Sea continental shelves with local and remote physical-biogeochemical implications is avoidable in a 2°C scenario

description: This data set includes the minimal data necessary to reproduce the findings of Nissen et al. (2023). Output of model simulations with the global ocean biogeochemical model FESOM1.4-REcoM2 is provided. In particular, besides information on the model grid, the data set includes annual mean water mass properties (temperature, salinity, density, oxygen, pH) and freshwater fluxes from sea ice and ice shelves and decadal averages of air-sea CO2 fluxes and deep-ocean carbon accumulation rates. Model results are provided from 1980-2100 for the four emission scenarios SSP1-2.6, SSP2-4.5, SSP3-7.0, and SSP5-8.5 (sorted from low emission to high emission). Please see README for more information on the individual files. Data set belongs to: Nissen, C., R. Timmermann, M. Hoppema, and J. Hauck, 2023: A regime shift on Weddell Sea continental shelves with local and remote physical-biogeochemical implications is avoidable in a 2°C scenario. <em>J. Climate</em>, https://doi.org/10.1175/JCLI-D-22-0926.1, in press.
DOI: 10.6084/m9.figshare.23775648
title: Phase 2 Survey

description: Dataset of survey published in Boerman, S.C., Rozendaal, E., & Van Reijmersdal, E.A. (2023). The development and testing of a pictogram signaling advertising in online videos. <em>International Journal of Advertising</em>
DOI: 10.18120/09qr-q805
title: Wireless Implantable COrtical Neuroprosthetic System (W-ICONS)
DOI: 10.6084/m9.figshare.22557379
title: Data for Distinct modes of aged soil carbon export in a large tropical lake basin identified using bulk and compound-specific radiocarbon analyses of fluvial and lacustrine sediment

description: We analyzed <sup>14</sup>C in bulk organic matter, palmitic acid (C<sub>16</sub>), and long-chain n-alkanoic acids (C<sub>24</sub>, C<sub>26</sub>, C<sub>28</sub>), within fluvial and lake sediments in the catchment of Lake Izabal, a large tectonic lake basin in Guatemala. We combined these measurements with bulk and compound-specific delta<sup>13</sup>C measurements, as well as sediment OC:N ratios, to understand the source and age of sedimentary organic matter in different regions of the lake catchment.
DOI: 10.6084/m9.figshare.22557379.v1
title: Data for Distinct modes of aged soil carbon export in a large tropical lake basin identified using bulk and compound-specific radiocarbon analyses of fluvial and lacustrine sediment

description: We analyzed <sup>14</sup>C in bulk organic matter, palmitic acid (C<sub>16</sub>), and long-chain n-alkanoic acids (C<sub>24</sub>, C<sub>26</sub>, C<sub>28</sub>), within fluvial and lake sediments in the catchment of Lake Izabal, a large tectonic lake basin in Guatemala. We combined these measurements with bulk and compound-specific delta<sup>13</sup>C measurements, as well as sediment OC:N ratios, to understand the source and age of sedimentary organic matter in different regions of the lake catchment.
DOI: 10.4121/78c6aa4e-d1b3-4399-bfd6-fbd10ceeb3b1
title: Data underlying: Fourier mode analysis for effective diffusion in coarse porous media via direct numerical simulations

description: This package contains a code for 3D resolved simulations of diffusion-reaction in randomized coarse porous media and the associated data. Throughout the simulations, the Fourier modes with n = 1-5 are determined and stored.
DOI: 10.4121/78c6aa4e-d1b3-4399-bfd6-fbd10ceeb3b1.v1
title: Data underlying: Fourier mode analysis for effective diffusion in coarse porous media via direct numerical simulations

description: This package contains a code for 3D resolved simulations of diffusion-reaction in randomized coarse porous media and the associated data. Throughout the simulations, the Fourier modes with n = 1-5 are determined and stored.
DOI: 10.5281/zenodo.8186891
title: hypsolebias_coamazonicus_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.8186890
title: hypsolebias_coamazonicus_spades_01.fasta.gz

description: .
DOI: 10.6084/m9.figshare.23774586.v1
title: Main dataset for colour analysis

description: Main dataset for colour analysis to be used with R script.
DOI: 10.6084/m9.figshare.23739435
title: Mnova Organic Chemistry Example Problem Sets

description: Example problem sets for teaching organic chemistry using Mnova Spectroscopy Database.
DOI: 10.6084/m9.figshare.23739492
title: Mnova Spectroscopy Database by Compound

description: Spectroscopy Database organized by compound. To accompany Journal of Chemical Education paper "Spectroscopy Data for Undergraduate Teaching" by Van Bramer and Bastin. Data files are all in Mestre file format.
DOI: 10.6084/m9.figshare.23748966
title: Mnova Spectroscopy Database by Lecture

description: Spectroscopy Database organized by lecture topic. To accompany Journal of Chemical Education paper "Spectroscopy Data for Undergraduate Teaching" by Van Bramer and Bastin. Data files are all in Mnova file format.
DOI: 10.6084/m9.figshare.23776773
title: GWAS summary data of hypothalamus in UKB white british population, adjusting for 4 brain lobes.

description: GWAS summary data of hypothalamus in UKB white british population, adjusting for 4 brain lobes.
DOI: 10.57979/siffwz
title: Projeto REP - Representatividade dos Parceiros Sociais e Impacto da Governança Económica

description: Um dos objetivos do projeto REP - https://rep.ics.ulisboa.pt/ - era descrever em extensão a representatividade de sindicatos e associações de empregadores portugueses a partir de um conceito multifacetado de representação, que previsse uma dimensão descritiva (por exemplo discriminando quem são os dirigentes) e uma dimensão substantiva (contemplando questões como o procedimento de auscultação dos associados). Neste sentido, foi criado um inquérito por questionário «online», em 2021, e dirigido a todos os sindicatos e associações de empregadores, de base, registados na Direção Geral de Emprego e Relações de Trabalho do Ministério do Trabalho, Solidariedade e Segurança Social. Este questionário operacionalizou ainda questões de perceção sobre o atual sistema de aferição de representatividade. Não sendo uma amostra estatisticamente representativa, a taxa de resposta foi de 44% e as suas caraterísticas seguem de perto as do universo, nomeadamente na maior concentração das sedes na capital e na existência de mais associações de empregadores do que sindicais.
DOI: 10.5281/zenodo.8121660
title: Data: Collective excitations of a Bose-Einstein condensate of hard-core bosons and their mediated interactions: from two-body bound states to mediated superfluidity

description: Data set for the manuscript: Collective excitations of a Bose-Einstein condensate of hard-core bosons and their mediated interactions: from two-body bound states to mediated superfluidity
DOI: 10.5281/zenodo.8121661
title: Data: Collective excitations of a Bose-Einstein condensate of hard-core bosons and their mediated interactions: from two-body bound states to mediated superfluidity

description: Data set for the manuscript: Collective excitations of a Bose-Einstein condensate of hard-core bosons and their mediated interactions: from two-body bound states to mediated superfluidity
DOI: 10.13140/rg.2.2.16471.04003
title: 1857 -How the Rebellion Spread like wild fire but only in a certain region
DOI: 10.5281/zenodo.8186664
title: Pepper-mini

description: The Pepp-mini dataset contains 1235 images and corresponding annotation files. LabelImg tool is used for matrix annotation to obtain XML files with labeled data. The XML file is then converted to PASCAL VOC 2007 data format.
DOI: 10.5281/zenodo.8186663
title: Pepper-mini

description: The Pepp-mini dataset contains 1235 images and corresponding annotation files. LabelImg tool is used for matrix annotation to obtain XML files with labeled data. The XML file is then converted to PASCAL VOC 2007 data format.
DOI: 10.5281/zenodo.8186914
title: Test clustered weather dataset for s2spy workflow

description: This dataset contains sea surface temperature (SST) over the Pacific and clustered 2 meter temperature (T2M) over North America. It is used in the example workflow of s2spy/lilio packages. The fields used here are processed outputs from the original ERA5 dataset. More details about how this dataset was generated can be found via this link: https://github.com/AI4S2S/cookbook/tree/main/data About the usage of this dataset in the example machine learning workflow of s2spy/lilio, check this link:https://github.com/AI4S2S/cookbook Data used here is generated using Copernicus Climate Change Service information and for more information about licensing, please check the Licence Agreement (https://cds.climate.copernicus.eu/cdsapp/#!/terms/licence-to-use-copernicus-products) for Copernicus Products.
DOI: 10.5281/zenodo.8186913
title: Test clustered weather dataset for s2spy workflow

description: This dataset contains sea surface temperature (SST) over the Pacific and clustered 2 meter temperature (T2M) over North America. It is used in the example workflow of s2spy/lilio packages. The fields used here are processed outputs from the original ERA5 dataset. More details about how this dataset was generated can be found via this link: https://github.com/AI4S2S/cookbook/tree/main/data About the usage of this dataset in the example machine learning workflow of s2spy/lilio, check this link:https://github.com/AI4S2S/cookbook Data used here is generated using Copernicus Climate Change Service information and for more information about licensing, please check the Licence Agreement (https://cds.climate.copernicus.eu/cdsapp/#!/terms/licence-to-use-copernicus-products) for Copernicus Products.
DOI: 10.5281/zenodo.5655521
title: Data for "A Shifting Lens: Urban Evolution Brings Exaptation into Focus"

description: Data from literature search of number of citations per year including terms related to adaptation.
DOI: 10.5281/zenodo.5655520
title: Data for "A Shifting Lens: Urban Evolution Brings Exaptation into Focus"

description: Data from literature search of number of citations per year including terms related to adaptation.
DOI: 10.5281/zenodo.8155337
title: Microarray analysis of Quail Embryo Pharyngeal Pouch Endoderm

description: Anterior endoderm region was isolated from Coturnix japonica embryos at qE3 and 2PP and 3/4PP endoderm separated from central pharynx. Total RNA was isolated from two biological replicate of 2PP and 3/4PP endoderm samples. Transcription profiles were obtained using GeneChip® Chicken Genome Array.
DOI: 10.5281/zenodo.8155336
title: Microarray analysis of Quail Embryo Pharyngeal Pouch Endoderm

description: Anterior endoderm region was isolated from Coturnix japonica embryos at qE3 and 2PP and 3/4PP endoderm separated from central pharynx. Total RNA was isolated from two biological replicate of 2PP and 3/4PP endoderm samples. Transcription profiles were obtained using GeneChip® Chicken Genome Array.
DOI: 10.26302/sshade/experiment_zed_20230626_01
title: MIR reflectance spectra of Mercury minerals analogs heated up to 673 K

description: MIR reflectance spectra of Mercury minerals analogs (anorthite 80 and synthetic volcanic glasses) heated by 50K step up to 673 K..
DOI: 10.26302/sshade/experiment_zed_20230704_01
title: NIR reflectance spectra of Mercury minerals analogs heated up to 673 K

description: NIR reflectance spectra of Mercury minerals analogs (anorthite 80 and synthetic volcanic glasses) heated by 50K step up to 673 K.
DOI: 10.6084/m9.figshare.23778174.v1
title: Untitled Item

description: data
DOI: 10.6084/m9.figshare.23778174
title: Untitled Item

description: data