cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3683095_d2
title: Additional file 2: of Care coordination for children with special health care needs: a cohort study

description: The dataset of the encounters and the codebook. â  SpeNK-FP records about activity performed by FPsâ  . (XLS 255 kb)
DOI: 10.6084/m9.figshare.c.3683095_d2.v1
title: Additional file 2: of Care coordination for children with special health care needs: a cohort study

description: The dataset of the encounters and the codebook. â  SpeNK-FP records about activity performed by FPsâ  . (XLS 255 kb)
DOI: 10.6084/m9.figshare.c.3683083_d5.v1
title: Additional file 3: of Diversity analysis of cotton (Gossypium hirsutum L.) germplasm using the CottonSNP63K Array

description: Individual matrices with numbers of different and identical SNPs for entries with the same name. These values were extracted directly from Additional file 5. Values above the diagonal represent the count of homozygous differences between pairs of samples. Values below the diagonal represent the number of identical SNPs genotyped between pairs. Heterozygous SNPs within samples were not counted in the number of differences between samples. SNP numbers were determined using all SNPs on the CottonSNP63K array. Five samples are included here that were identified as outliers and not used in the diversity analysis. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3683083_d5
title: Additional file 3: of Diversity analysis of cotton (Gossypium hirsutum L.) germplasm using the CottonSNP63K Array

description: Individual matrices with numbers of different and identical SNPs for entries with the same name. These values were extracted directly from Additional file 5. Values above the diagonal represent the count of homozygous differences between pairs of samples. Values below the diagonal represent the number of identical SNPs genotyped between pairs. Heterozygous SNPs within samples were not counted in the number of differences between samples. SNP numbers were determined using all SNPs on the CottonSNP63K array. Five samples are included here that were identified as outliers and not used in the diversity analysis. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3683155_d2.v1
title: Additional file 4: of Single-cell mRNA isoform diversity in the mouse brain

description: Contains all isoforms. (XLSX 793 kb)
DOI: 10.6084/m9.figshare.c.3683155_d2
title: Additional file 4: of Single-cell mRNA isoform diversity in the mouse brain

description: Contains all isoforms. (XLSX 793 kb)
DOI: 10.6084/m9.figshare.c.3683155_d3.v1
title: Additional file 5: of Single-cell mRNA isoform diversity in the mouse brain

description: Is a summary of additional file 4 that contains all genes, number of isoforms per sample and number of coding isoforms. (XLSX 177 kb)
DOI: 10.6084/m9.figshare.c.3683155_d3
title: Additional file 5: of Single-cell mRNA isoform diversity in the mouse brain

description: Is a summary of additional file 4 that contains all genes, number of isoforms per sample and number of coding isoforms. (XLSX 177 kb)
DOI: 10.6084/m9.figshare.c.3683155_d4.v1
title: Additional file 3: of Single-cell mRNA isoform diversity in the mouse brain

description: Contains a table with a summary of the six sequenced cDNA libraries and a comparison with the previously sequenced STRT libraries. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.c.3683155_d5.v1
title: Additional file 2: of Single-cell mRNA isoform diversity in the mouse brain

description: Contains a table with a summary of the long and short data sets. (XLSX 61 kb)
DOI: 10.6084/m9.figshare.c.3683155_d4
title: Additional file 3: of Single-cell mRNA isoform diversity in the mouse brain

description: Contains a table with a summary of the six sequenced cDNA libraries and a comparison with the previously sequenced STRT libraries. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.c.3683155_d5
title: Additional file 2: of Single-cell mRNA isoform diversity in the mouse brain

description: Contains a table with a summary of the long and short data sets. (XLSX 61 kb)
DOI: 10.15468/dl.p36sh6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acantholiparis opercularis Gilbert & Burke, 1912",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038105-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3684199_d2.v1
title: Additional file 4: Table S2. of Increased rates of protein evolution and asymmetric deceleration after the whole-genome duplication in yeasts

description: FOR data set analysis, including dN/dS data, likelihood-ratio tests' results for 462 orthogroups. (XLSX 57Â kb)
DOI: 10.6084/m9.figshare.c.3684199_d2
title: Additional file 4: Table S2. of Increased rates of protein evolution and asymmetric deceleration after the whole-genome duplication in yeasts

description: FOR data set analysis, including dN/dS data, likelihood-ratio tests' results for 462 orthogroups. (XLSX 57Â kb)
DOI: 10.6084/m9.figshare.c.3684211_d3
title: Additional file 18: R code. of Evaluation of logistic regression models and effect of covariates for caseâ  control study in RNA-Seq analysis

description: This R code regenerates the simulated data sets. (R 6 kb)
DOI: 10.6084/m9.figshare.c.3684217_d4.v1
title: Additional file 1: Table S1. of A machine learning classifier trained on cancer transcriptomes detects NF1 inactivation signal in glioblastoma

description: NF1 mutations in the TCGA GBM dataset (UCSS Xena, hg19). (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3684211_d5.v1
title: Additional file 14: Table S5. of Evaluation of logistic regression models and effect of covariates for case–control study in RNA-Seq analysis

description: All significant genes in FL regressions using the DA method. Mean.Exp.Case: Normalized mean expression value in cases, Mean.Exp.Cont: Normalized mean expression value in controls, Disp: Dispersion, NB, CL, BL, FL: P-values from negative binomial regression, classical logistic regression, Bayes logistic regression, Firth’s logistic regression. (XLS 1013 kb)
DOI: 10.6084/m9.figshare.c.3684211_d5
title: Additional file 14: Table S5. of Evaluation of logistic regression models and effect of covariates for case–control study in RNA-Seq analysis

description: All significant genes in FL regressions using the DA method. Mean.Exp.Case: Normalized mean expression value in cases, Mean.Exp.Cont: Normalized mean expression value in controls, Disp: Dispersion, NB, CL, BL, FL: P-values from negative binomial regression, classical logistic regression, Bayes logistic regression, Firth’s logistic regression. (XLS 1013 kb)
DOI: 10.6084/m9.figshare.c.3684217_d4
title: Additional file 1: Table S1. of A machine learning classifier trained on cancer transcriptomes detects NF1 inactivation signal in glioblastoma

description: NF1 mutations in the TCGA GBM dataset (UCSS Xena, hg19). (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.28050071
title: Scilla luciliae raw GC-MS files

description: Metabolite extraction from Scilla luciliae leaf tissue
DOI: 10.6084/m9.figshare.28050071.v1
title: Scilla luciliae raw GC-MS files

description: Metabolite extraction from Scilla luciliae leaf tissue
DOI: 10.6084/m9.figshare.c.3684247_d4.v1
title: Additional file 4: Table S3. of Pathogenic variant burden in the ExAC database: an empirical approach to evaluating population data for clinical variant interpretation

description: List of clinically relevant transcripts for hereditary cancer, PCD, and cardiology genes. For each gene examined, a single clinically relevant transcript was selected to make NMD predictions. PCD primary ciliary dyskinesia. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3684247_d4
title: Additional file 4: Table S3. of Pathogenic variant burden in the ExAC database: an empirical approach to evaluating population data for clinical variant interpretation

description: List of clinically relevant transcripts for hereditary cancer, PCD, and cardiology genes. For each gene examined, a single clinically relevant transcript was selected to make NMD predictions. PCD primary ciliary dyskinesia. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3684247_d5.v1
title: Additional file 5: Table S4. of Pathogenic variant burden in the ExAC database: an empirical approach to evaluating population data for clinical variant interpretation

description: List of ClinVar submitters. The analysis presented in this work were based on ClinVar entries from the listed submitters only. The submitter names are as they appear in the ClinVar XML file and may include multiple names from the same institution. (XLSX 9 kb)
DOI: 10.5281/zenodo.14511023
title: Data associated with publication titled "Jewels of the desert: Natural history and species-level phylogeny of Stiriinae (Lepidoptera, Noctuidae)"

description: Please read the "README.txt" file for information on the files in this archive.
DOI: 10.6084/m9.figshare.c.3684247_d5
title: Additional file 5: Table S4. of Pathogenic variant burden in the ExAC database: an empirical approach to evaluating population data for clinical variant interpretation

description: List of ClinVar submitters. The analysis presented in this work were based on ClinVar entries from the listed submitters only. The submitter names are as they appear in the ClinVar XML file and may include multiple names from the same institution. (XLSX 9 kb)
DOI: 10.34740/kaggle/dsv/10230426
title: German Restaurants List
DOI: 10.6084/m9.figshare.c.3684313_d1
title: Additional file 1: of Closely-related Borrelia burgdorferi (sensu stricto) strains exhibit similar fitness in single infections and asymmetric competition in multiple infections

description: Data from laboratory infections used in statistical analyses. (CSV 4 kb)
DOI: 10.6084/m9.figshare.c.3684316_d1.v1
title: Additional file 4: of Mechanism of action of trabectedin in desmoplastic small round cell tumor cells

description: DEGs after trabectedin treatment of JN-DSRCT-1 cells. Differentially expressed genes for the three time points of JN-DSCRT-1 treatment with trabectedin (6 h, 12 h, 24 h). logFC, log2-fold change; AveExpr, average expression across the samples; t and B, results from the statistical test; P. Value, raw p-value from the statistical test; adj.P.Val, FDR adjusted p-values. (XLSX 318 kb)
DOI: 10.6084/m9.figshare.c.3684316_d1
title: Additional file 4: of Mechanism of action of trabectedin in desmoplastic small round cell tumor cells

description: DEGs after trabectedin treatment of JN-DSRCT-1 cells. Differentially expressed genes for the three time points of JN-DSCRT-1 treatment with trabectedin (6 h, 12 h, 24 h). logFC, log2-fold change; AveExpr, average expression across the samples; t and B, results from the statistical test; P. Value, raw p-value from the statistical test; adj.P.Val, FDR adjusted p-values. (XLSX 318 kb)
DOI: 10.5281/zenodo.14511028
title: ESTRATEGIA DE TRANSMEDIACIÓN EN VIOLENCIAS BASADAS EN GÉNERO (VBG) Y DISCRIMINACIÓN

description: Descripción de la innovación, A través de la transmediación se generan contenidos en una página web fundamentada en los estudios de género, pero siendo una plataforma que actualmente está centrada en las violencias basadas en género (VBG) e información sobre las rutas a las que podría acudir una persona para recibir orientación y atención ante hechos de este tipo, así como estrategias para afrontar la problemática. Proceso de implementación, Esta estrategia de transmediación que inicio por los aportes narrativos y artículos de investigación, fue diseñada por integrantes del semillero de investigación: Hacia Nuevas Construcciones de Género y Sexualidad y se dispuso su acceso abierto a la comunidad educativa  con el interés de brindar  información para  casos de violencias basadas en género (VBG) en la Institución Universitaria Politécnico Grancolombiano y que estudiantes, docentes y colaboradores  tuvieran la opción de compartir los contenidos de la página web con personas cercanas que consideraran que la información sintetizada, les podría ser útil. Igualmente, se ha difundido por redes sociales. Evaluación de resultados, es un producto narrativo y de transmedia digital que se encuentra en proceso de cimentación y expansión con alcance inicial de los estudiantes de psicología de la modalidad presencial en Bogotá, Medellín y Modalidad Virtual, por medio de los comentarios en el área del blog, se puede obtener referencias cualitativas de quienes la visiten. Además, como transmediación hay aportes del semillero de revisión literaria, reseña crítica y podcast que también pueden reflejar los resultados. Conclusiones, Las violencias basadas en genero son una problemática social, con los medios digitales y la transmedia se puede informar y explicar a las personas como pueden afrontarla.
DOI: 10.5281/zenodo.14511029
title: ESTRATEGIA DE TRANSMEDIACIÓN EN VIOLENCIAS BASADAS EN GÉNERO (VBG) Y DISCRIMINACIÓN

description: Descripción de la innovación, A través de la transmediación se generan contenidos en una página web fundamentada en los estudios de género, pero siendo una plataforma que actualmente está centrada en las violencias basadas en género (VBG) e información sobre las rutas a las que podría acudir una persona para recibir orientación y atención ante hechos de este tipo, así como estrategias para afrontar la problemática. Proceso de implementación, Esta estrategia de transmediación que inicio por los aportes narrativos y artículos de investigación, fue diseñada por integrantes del semillero de investigación: Hacia Nuevas Construcciones de Género y Sexualidad y se dispuso su acceso abierto a la comunidad educativa  con el interés de brindar  información para  casos de violencias basadas en género (VBG) en la Institución Universitaria Politécnico Grancolombiano y que estudiantes, docentes y colaboradores  tuvieran la opción de compartir los contenidos de la página web con personas cercanas que consideraran que la información sintetizada, les podría ser útil. Igualmente, se ha difundido por redes sociales. Evaluación de resultados, es un producto narrativo y de transmedia digital que se encuentra en proceso de cimentación y expansión con alcance inicial de los estudiantes de psicología de la modalidad presencial en Bogotá, Medellín y Modalidad Virtual, por medio de los comentarios en el área del blog, se puede obtener referencias cualitativas de quienes la visiten. Además, como transmediación hay aportes del semillero de revisión literaria, reseña crítica y podcast que también pueden reflejar los resultados. Conclusiones, Las violencias basadas en genero son una problemática social, con los medios digitales y la transmedia se puede informar y explicar a las personas como pueden afrontarla.
DOI: 10.6084/m9.figshare.c.3684313_d2.v1
title: Additional file 2: of Closely-related Borrelia burgdorferi (sensu stricto) strains exhibit similar fitness in single infections and asymmetric competition in multiple infections

description: Model code for simulation of strain persistence. (R 3 kb)
DOI: 10.6084/m9.figshare.c.3684313_d2
title: Additional file 2: of Closely-related Borrelia burgdorferi (sensu stricto) strains exhibit similar fitness in single infections and asymmetric competition in multiple infections

description: Model code for simulation of strain persistence. (R 3 kb)
DOI: 10.6084/m9.figshare.c.3684316_d2.v1
title: Additional file 5: of Mechanism of action of trabectedin in desmoplastic small round cell tumor cells

description: Pathway analysis after trabectedin treatment of JN-DSRCT-1 cells. Pathway analysis for the differentially expressed genes 6 h after trabectedin wash-out. pSize, number of genes belonging to the pathway; tA, statistical measurement of pathway activation (if greater than 0) or inhibition (if lower than 0), pGFdr, FDR adjusted p-value. (XLSX 39 kb)
DOI: 10.25910/h5wr-j662
title: Claims Submitted to the Multilateral Development Bank Accountability Mechanisms – 1994-2019

description: The dataset represents a summary depiction of grievance cases brought to the Accountability Mechanisms (AMs) of the six Multilateral Development Banks (MDBs) from 1994 to 2018: The Asian Development Bank, the African Development Bank, the Inter-American Development Bank, the European Bank for Reconstruction and Development, the World Bank (IBRD/IDA) and the World Bank Group (IFC and MIGA). These Accountability Mechanisms were created to enable people adversely or potentially adversely affected by a project or program financed by the MDBs to take their concerns to the Banks for recourse. The Accountability Mechanisms generally do not stop the project or provide material reparations. They seek to stop or prevent harm and mitigate the negative aspects of a development project. The objective of the database is to be able to garner a quick qualitative snapshot of any given case, as well as to be able to aggregate quantitative data for each AM as a whole and to identify trends over time. Each of the grievance mechanisms has a specific name, which may have changed over time. It may also be comprised of more than one office with separate functions (i.e. consulting with affected people versus a compliance investigation). Most of the Accountability Mechanisms now have separate functions, with the consultation process also called problem solving. The compliance phase is to investigate whether the MDBs have complied with their environmental and social policies and whether this has led to harm. The Accountability Mechanisms are detailed below. The dataset includes cases received by the AMs from the beginning of each mechanism until 03 July 2019. The last update for cases is 3 July 2019. Access note: Please notify Susan Park for any changes made to the data set. Contact email: susan.park@sydney.edu.au
DOI: 10.6084/m9.figshare.c.3684316_d5
title: Additional file 2: of Mechanism of action of trabectedin in desmoplastic small round cell tumor cells

description: RT-Q-PCR primers. Table of RT-Q-PCR primers used. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3684355_d1
title: MOESM1 of Comparative genomic analysis of Shiga toxin-producing and non-Shiga toxin-producing Escherichia coli O157 isolated from outbreaks in Korea

description: Additional file 1: Table S1. Selected genes from NCCP15739 and NCCP15738 for functional annotation clustering.
DOI: 10.6084/m9.figshare.c.3684355_d2.v1
title: MOESM2 of Comparative genomic analysis of Shiga toxin-producing and non-Shiga toxin-producing Escherichia coli O157 isolated from outbreaks in Korea

description: Additional file 2: Table S2. Metabolic pathway comparison of NCCP15739 and NCCP15738.
DOI: 10.6084/m9.figshare.28050077
title: Styphnolobium japonicum raw GC-MS files

description: Metabolite extraction from Styphnolobium japonicum leaf tissue
DOI: 10.6084/m9.figshare.28050077.v1
title: Styphnolobium japonicum raw GC-MS files

description: Metabolite extraction from Styphnolobium japonicum leaf tissue
DOI: 10.6084/m9.figshare.c.3684355_d2
title: MOESM2 of Comparative genomic analysis of Shiga toxin-producing and non-Shiga toxin-producing Escherichia coli O157 isolated from outbreaks in Korea

description: Additional file 2: Table S2. Metabolic pathway comparison of NCCP15739 and NCCP15738.
DOI: 10.6084/m9.figshare.c.3684355_d3.v1
title: MOESM5 of Comparative genomic analysis of Shiga toxin-producing and non-Shiga toxin-producing Escherichia coli O157 isolated from outbreaks in Korea

description: Additional file 5: Table S5. Antibiotic resistance genes of NCCP15739 and NCCP15738.
DOI: 10.6084/m9.figshare.c.3684355_d3
title: MOESM5 of Comparative genomic analysis of Shiga toxin-producing and non-Shiga toxin-producing Escherichia coli O157 isolated from outbreaks in Korea

description: Additional file 5: Table S5. Antibiotic resistance genes of NCCP15739 and NCCP15738.
DOI: 10.6084/m9.figshare.c.3684340_d6.v1
title: Additional file 5: of 
                     De novo transcriptome assembly analysis of weed Apera spica-venti from seven tissues and growth stages

description: Alignment of cytochrome P450s CYP89A2 protein sequences from Apera, Lolium, Triticum, and Aegilops. (RTF 1753 kb)
DOI: 10.6084/m9.figshare.c.3684340_d6
title: Additional file 5: of 
                     De novo transcriptome assembly analysis of weed Apera spica-venti from seven tissues and growth stages

description: Alignment of cytochrome P450s CYP89A2 protein sequences from Apera, Lolium, Triticum, and Aegilops. (RTF 1753 kb)
DOI: 10.6084/m9.figshare.c.3684355_d4.v1
title: MOESM4 of Comparative genomic analysis of Shiga toxin-producing and non-Shiga toxin-producing Escherichia coli O157 isolated from outbreaks in Korea

description: Additional file 4: Table S4. Phage-associated regions in NCCP15739 and the reference strains.
DOI: 10.6084/m9.figshare.c.3684355_d4
title: MOESM4 of Comparative genomic analysis of Shiga toxin-producing and non-Shiga toxin-producing Escherichia coli O157 isolated from outbreaks in Korea

description: Additional file 4: Table S4. Phage-associated regions in NCCP15739 and the reference strains.
DOI: 10.6084/m9.figshare.c.3684355_d5
title: MOESM3 of Comparative genomic analysis of Shiga toxin-producing and non-Shiga toxin-producing Escherichia coli O157 isolated from outbreaks in Korea

description: Additional file 3: Table S3. Virulence genes of NCCP15739 and the reference strains.
DOI: 10.6084/m9.figshare.c.3684355_d5.v1
title: MOESM3 of Comparative genomic analysis of Shiga toxin-producing and non-Shiga toxin-producing Escherichia coli O157 isolated from outbreaks in Korea

description: Additional file 3: Table S3. Virulence genes of NCCP15739 and the reference strains.
DOI: 10.6084/m9.figshare.c.3685273_d1.v1
title: Additional file 1 of The importance of selection in the evolution of blindness in cavefish

description: Mathematica notebook verifying the analysis of our deterministic model. (NB 115 kb)
DOI: 10.6084/m9.figshare.c.3685273_d1
title: Additional file 1 of The importance of selection in the evolution of blindness in cavefish

description: Mathematica notebook verifying the analysis of our deterministic model. (NB 115 kb)
DOI: 10.6084/m9.figshare.c.3685279_d4
title: Additional file 5: of Algorithm and software to automatically identify latency and amplitude features of local field potentials recorded in electrophysiological investigation

description: A function that is called by main_script.m to compute the smoothing of the signal and its first-time derivative. Also the functions that guarantee the correct running of main_script.m. To test the algorithm, invoking only main_script.m is necessary (all the other functions must be contained in the same folder). (M 1Â kb)
DOI: 10.6084/m9.figshare.c.3685291_d2
title: Additional file 2: Table S2. of Melanoma genome evolution across species

description: ZMEL1 validation primers for MiSeq run. This file contains all of the PCR primer sequences used to validate the subset of 384 called mutations that were validated in the ZMEL1 line via MiSeq. (XLSX 58Â kb)
DOI: 10.6084/m9.figshare.c.3685279_d5.v1
title: Additional file 6: of Algorithm and software to automatically identify latency and amplitude features of local field potentials recorded in electrophysiological investigation

description: A function that is called by main_script.m to compute the signal second-time derivative. Also the functions that guarantee the correct running of main_script.m. To test the algorithm, invoking only main_script.m is necessary (all the other functions must be contained in the same folder). (M 1Â kb)
DOI: 10.6084/m9.figshare.c.3685291_d3.v1
title: Additional file 1: Table S1. of Melanoma genome evolution across species

description: ZMEL1 whole-genome sequencing. This file contains all of the mutations called by MuTect and Shimmer, along with their associated quality scores and overlapping mutations. (XLSX 6276Â kb)