cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17499837
title: A Versatile GPMV-Imaging Platform for Quantitative Analysis of Receptor Binding and Membrane Fusion

description: Membrane fusion is central to biological processes such as viral entry, fertilization and cell-to-cell fusion. Gaining a mechanistic understanding of fusion requires the ability to visualize and quantify the dynamic interaction between two membranes and their associated protein machineries at high temporal and spatial resolution. However, studying these processes in live cells remains challenging due to the complexity of the cellular environment. Here we demonstrate a versatile cell-free platform based on giant plasma membrane vesicles (GPMVs) that enables controlled, quantitative analysis of receptor binding and membrane fusion kinetics in a native membrane context. As proof of concept, we reconstitute the SARS-CoV-1 Spike-ACE2 interaction, capturing specific receptor engagement and accumulation at the membrane interface using confocal microscopy and micropipette aspiration. Fusion was induced by proteolytic activation and quantified using both high-resolution microscopy and high-throughput Imaging Flow Cytometry. The platform also reveals the influence of membrane composition on fusion efficiency, demonstrated by the impact of cholesterol depletion. This approach provides a broadly applicable system for dissecting membrane fusion and protein-protein interactions across membranes, with compatibility for biophysical, imaging and structural analysis. It offers new opportunities for mechanistic studies and inhibitor screening in a biologically relevant yet experimentally accessible context.
DOI: 10.15468/dl.dhtv62
title: Occurrence Download

description: A dataset containing 2611175 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "TaxonKey is Plantae",
 "Year 1995-2025"
 ]
}

 The dataset includes 2611175 records from 396 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010612-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13574940
title: e-IPO Indonesia Data - Investment
DOI: 10.15468/dl.re2a9b
title: Occurrence Download

description: A dataset containing 3026726 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 3026726 records from 499 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010613-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/rkx8zz
title: Surface deposition of nanometer scale carbon structures on Bi2Sr2CaCu2O8+δ using a low-cost scanning electron microscope

description: In this study, we investigate optically active nanostructures on Bi₂Sr₂CaCu₂O₈₊δ (BSCCO). The nanostructures are constructed from carbon nanocrystals formed using the electron beam of a scanning electron microscope to locally decompose residual hydrocarbons at the BSCCO surface. Atomic force microscopy is used to characterize the dimensions of these structures as a function of beam exposure time. This technique has been used to induce localized intercalation to form carbon nanoparticles up to tens of nanometers into a variety of 2D materials. Cross-sectional scanning transmission electron microscopy in BSCCO shows the presence of these carbon deposits on the surface and beneath the first layer, but they do not penetrate further into the bulk. Therefore, this technique is not suitable for localized intercalation in BSCCO, it does have promise as a cost-effective approach to pattern nanometer scale etch stops.
DOI: 10.15468/dl.ga64rg
title: Occurrence Download

description: A dataset containing 68196 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "GadmGid is one of (COL.6.42_2, COL.6.43_2, COL.6.4_2)",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 68196 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014211-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xchmkr
title: Occurrence Download

description: A dataset containing 33583408 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 33583408 records from 4851 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014207-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30393475
title: MS3SEG Dataset

description: MS3SEG: Multiple sclerosis MRI segmentation dataset with tri-mask annotations distinguishing ventricles, normal white matter hyperintensities, and MS lesions. Features 100 patients, Toshiba scanner data, complete preprocessing pipeline, and baseline deep learning models. Enables cross-vendor generalizability research. Open dataset for AI research.
DOI: 10.6084/m9.figshare.30393475.v4
title: MS3SEG Dataset

description: MS3SEG: Multiple sclerosis MRI segmentation dataset with tri-mask annotations distinguishing ventricles, normal white matter hyperintensities, and MS lesions. Features 100 patients, Toshiba scanner data, complete preprocessing pipeline, and baseline deep learning models. Enables cross-vendor generalizability research. Open dataset for AI research.
DOI: 10.6084/m9.figshare.30393475.v3
title: MS3SEG Dataset

description: MS3SEG: Multiple sclerosis MRI segmentation dataset with tri-mask annotations distinguishing ventricles, normal white matter hyperintensities, and MS lesions. Features 100 patients, Toshiba scanner data, complete preprocessing pipeline, and baseline deep learning models. Enables cross-vendor generalizability research. Open dataset for AI research.
DOI: 10.15468/dl.pm7jhj
title: Occurrence Download

description: A dataset containing 349 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nymphaea immutabilis",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 349 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018347-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.43e26r
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lachnostachys ferruginea",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 84 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018348-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31324981
title: <b>Coexistence of Predators and Prey: Spatio-Temporal Niche Partitioning in Bengal Tiger Landscapes of the Terai Wetlands</b>

description: This dataset contains activity patterns, temporal overlap, and predator–prey interactions in Shuklaphanta National Park, Nepal. It includes camera trap records for predators (Bengal tiger, common leopard, smooth-coated otter, fishing cat, mugger crocodile) and herbivores/prey species (deer species, wild boar, primates, peacock), along with processed data for activity density, overlap estimates (D̂), bootstrap confidence intervals, and plots of diel activity patterns. The analyses employ circular statistics using the <code>overlap</code> R package, covering predator–predator, predator–prey, and herbivore–herbivore interactions. Figures include multi-panel visualizations of activity densities and overlaps by species and site.
DOI: 10.6084/m9.figshare.31324981.v1
title: <b>Coexistence of Predators and Prey: Spatio-Temporal Niche Partitioning in Bengal Tiger Landscapes of the Terai Wetlands</b>

description: This dataset contains activity patterns, temporal overlap, and predator–prey interactions in Shuklaphanta National Park, Nepal. It includes camera trap records for predators (Bengal tiger, common leopard, smooth-coated otter, fishing cat, mugger crocodile) and herbivores/prey species (deer species, wild boar, primates, peacock), along with processed data for activity density, overlap estimates (D̂), bootstrap confidence intervals, and plots of diel activity patterns. The analyses employ circular statistics using the <code>overlap</code> R package, covering predator–predator, predator–prey, and herbivore–herbivore interactions. Figures include multi-panel visualizations of activity densities and overlaps by species and site.
DOI: 10.15468/dl.uu9p5h
title: Occurrence Download

description: A dataset containing 123284 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE",
 "TaxonKey is Muntiacus reevesi",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 123284 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018305-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18642283
title: LINF_330018100

description: Chloride channel protein | VCL2; Leishmania infantum (strain JPCM5)
DOI: 10.5281/zenodo.18642282
title: LINF_330018100

description: Chloride channel protein | VCL2; Leishmania infantum (strain JPCM5)
DOI: 10.15468/dl.rmfn68
title: Occurrence Download

description: A dataset containing 11596 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "OccurrenceStatus is Present",
 "TaxonKey is Carex brizoides"
 ]
}

 The dataset includes 11596 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018350-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6yrgrv
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nymphaea lukei",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 46 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018351-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qkkr3r
title: Occurrence Download

description: A dataset containing 120159 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE",
 "TaxonKey is Odocoileus hemionus",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 120159 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018315-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w3maff
title: Occurrence Download

description: A dataset containing 733 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lagopsis supina",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 733 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018352-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8u7kx8
title: Occurrence Download

description: A dataset containing 772 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE",
 "TaxonKey is Ozotoceros bezoarticus",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 772 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018353-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18460278
title: Genome-wide single-cell perturbation screens with VIPerturb-seq

description: These files represent new datasets generated in the preprint "Genome-wide single-cell perturbation screens with VIPerturb-seq". See below for the description of the files, and the preprint for full details. 

multimodal_cell_line_mixing_pilot.rds - A Seurat object containing transcriptome, guide-barcodes, protein (ADT), and hashing (HTO) data for the cell line mixing VIPerturb-seq pilot described in Figure 2 of the preprint.

genome_wide_screen_binX.rds - 3 Seurat objects containing transcriptome and guide-barcodes data for the genome-wide VIPerturb-seq experiment described in Figure 3 of the preprint. Each object contains all non-targeting cells in the dataset and a random subset of perturbations, as described in genome_wide_manifest.txt .

genome_wide_manifest.txt - A table describing which perturbations are included in which objects for the genome-wide experiment. 

genome_wide_filtered.rds - A Seurat object containing transcriptome and guide-barcodes for a subset of 6,724 perturbations from the genome-wide experiment with fingerprints passing filtering. 

vimentin_screen.rds - A Seurat object containing transcriptome and guide-barcodes data for VIPerturb-seq screen for regulators of vimentin described in Figure 4 of the preprint.
DOI: 10.5281/zenodo.18460279
title: Genome-wide single-cell perturbation screens with VIPerturb-seq

description: These files represent new datasets generated in the preprint "Genome-wide single-cell perturbation screens with VIPerturb-seq". See below for the description of the files, and the preprint for full details. 

multimodal_cell_line_mixing_pilot.rds - A Seurat object containing transcriptome, guide-barcodes, protein (ADT), and hashing (HTO) data for the cell line mixing VIPerturb-seq pilot described in Figure 2 of the preprint.

genome_wide_screen_binX.rds - 3 Seurat objects containing transcriptome and guide-barcodes data for the genome-wide VIPerturb-seq experiment described in Figure 3 of the preprint. Each object contains all non-targeting cells in the dataset and a random subset of perturbations, as described in genome_wide_manifest.txt .

genome_wide_manifest.txt - A table describing which perturbations are included in which objects for the genome-wide experiment. 

genome_wide_filtered.rds - A Seurat object containing transcriptome and guide-barcodes for a subset of 6,724 perturbations from the genome-wide experiment with fingerprints passing filtering. 

vimentin_screen.rds - A Seurat object containing transcriptome and guide-barcodes data for VIPerturb-seq screen for regulators of vimentin described in Figure 4 of the preprint.
DOI: 10.15468/dl.hfwv7m
title: Occurrence Download

description: A dataset containing 234 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nymphaea macrosperma",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 234 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018354-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rprns9
title: Occurrence Download

description: A dataset containing 378 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anopheles lesteri"
 ]
}

 The dataset includes 378 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018355-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nm3rj8
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE",
 "TaxonKey is Pudu mephistophiles",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 56 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018356-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q74xg6
title: Occurrence Download

description: A dataset containing 7513 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lamium album",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 7513 records from 302 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018357-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x8896h
title: Occurrence Download

description: A dataset containing 13838 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE",
 "TaxonKey is Pudu puda",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 13838 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018358-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.phsk97
title: Occurrence Download

description: A dataset containing 27541 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE",
 "TaxonKey is Rangifer tarandus",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 27541 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018360-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cmcftx
title: Occurrence Download

description: A dataset containing 4544 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ficus virens",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 4544 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018361-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tzxgvm
title: Occurrence Download

description: A dataset containing 292 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE",
 "TaxonKey is Rucervus duvaucelii",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 292 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018364-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m8aug9
title: Occurrence Download

description: A dataset containing 1554 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lavandula angustifolia",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1554 records from 207 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018363-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dgd6et
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sternochetus mangiferae",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 119 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018365-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fzhbtt
title: Occurrence Download

description: A dataset containing 273206 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE",
 "TaxonKey is Odocoileus virginianus",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 273206 records from 235 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018322-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqzhfp
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE",
 "TaxonKey is Rucervus eldii",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 77 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018366-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57967/hf/7820
title: Sentiment-Analysis-Complex
DOI: 10.15468/dl.jaf84u
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE",
 "TaxonKey is Rucervus schomburgki",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018367-260208012135463/datasets/export for details.
DOI: 10.5281/zenodo.18642375
title: calloselasma_rhodostoma_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.18642374
title: calloselasma_rhodostoma_decontaminated_FSCR.fasta.gz
DOI: 10.15468/dl.a83t68
title: Occurrence Download

description: A dataset containing 4050 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rottboellia cochinchinensis",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 4050 records from 249 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018368-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.