cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25592/uhhfdm.1148
title: Aplastodiscus leucopygius USNM 208405, unstained CT volume

description: Species: <em>Aplastodiscus leucopygius</em>

Collection number: USNM 208405

Institution of origin: National Museum of Natural History, Washington, D.C.

Data: CT volume of unstained specimen

Coverage: partial specimen, right hindlimb cut

Scanner: Skyscan1172

Scanning paramters: 52 kV; 188 µA; filter: Al 0.5 mm

Voxel size: 21.07881 µmDataset used in:


 Engelkes, K., Kath, L., Kleinteich, T., Hammel, J. U., Beerlink, A., Haas, A. (2020) Ecomorphology of the pectoral girdle in anurans (Amphibia, Anura): Shape diversity and biomechanical considerations. Ecology and Evolution 10(20): 11467–11487. https://doi.org/10.1002/ece3.6784.
description: Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - 387723284 and the Wilhelm-Peters-Fonds of the Deutsche Gesellschaft für Herpetologie und Terrarienkunde e.V.
DOI: 10.25592/uhhfdm.1147
title: Aplastodiscus leucopygius USNM 208405, unstained CT volume

description: Species: <em>Aplastodiscus leucopygius</em>

Collection number: USNM 208405

Institution of origin: National Museum of Natural History, Washington, D.C.

Data: CT volume of unstained specimen

Coverage: partial specimen, right hindlimb cut

Scanner: Skyscan1172

Scanning paramters: 52 kV; 188 µA; filter: Al 0.5 mm

Voxel size: 21.07881 µmDataset used in:


 Engelkes, K., Kath, L., Kleinteich, T., Hammel, J. U., Beerlink, A., Haas, A. (2020) Ecomorphology of the pectoral girdle in anurans (Amphibia, Anura): Shape diversity and biomechanical considerations. Ecology and Evolution 10(20): 11467–11487. https://doi.org/10.1002/ece3.6784.
description: Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - 387723284 and the Wilhelm-Peters-Fonds of the Deutsche Gesellschaft für Herpetologie und Terrarienkunde e.V.
DOI: 10.25592/uhhfdm.1152
title: Aromobates nocturnus AMNH A130017, unstained CT volume

description: Species: <em>Aromobates nocturnus</em>

Collection number: AMNH A130017

Institution of origin: American Museum of Natural History, New York

Data: CT volume of unstained specimen

Coverage: partial specimen, snout cut

Scanner: Phoenix Nanotom S

Scanning paramters: 100 kV; 70 µA; filter: no filter

Voxel size: 29.99994 µmDataset used in:


 Engelkes, K., Kath, L., Kleinteich, T., Hammel, J. U., Beerlink, A., Haas, A. (2020) Ecomorphology of the pectoral girdle in anurans (Amphibia, Anura): Shape diversity and biomechanical considerations. Ecology and Evolution 10(20): 11467–11487. https://doi.org/10.1002/ece3.6784.
description: Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - 387723284.
DOI: 10.25592/uhhfdm.1151
title: Aromobates nocturnus AMNH A130017, unstained CT volume

description: Species: <em>Aromobates nocturnus</em>

Collection number: AMNH A130017

Institution of origin: American Museum of Natural History, New York

Data: CT volume of unstained specimen

Coverage: partial specimen, snout cut

Scanner: Phoenix Nanotom S

Scanning paramters: 100 kV; 70 µA; filter: no filter

Voxel size: 29.99994 µmDataset used in:


 Engelkes, K., Kath, L., Kleinteich, T., Hammel, J. U., Beerlink, A., Haas, A. (2020) Ecomorphology of the pectoral girdle in anurans (Amphibia, Anura): Shape diversity and biomechanical considerations. Ecology and Evolution 10(20): 11467–11487. https://doi.org/10.1002/ece3.6784.
description: Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - 387723284.
DOI: 10.25592/uhhfdm.1206
title: Crossodactylus caramaschii USNM 318234, unstained CT volume

description: Species: <em>Crossodactylus caramaschii</em>

Collection number: USNM 318234

Institution of origin: National Museum of Natural History, Washington, D.C.

Data: CT volume of unstained specimen

Coverage: full specimen

Scanner: Skyscan1172

Scanning paramters: 49 kV; 200 µA; filter: Al 0.5 mm

Voxel size: 11.86915 µmDataset used in:


 Engelkes, K., Kath, L., Kleinteich, T., Hammel, J. U., Beerlink, A., Haas, A. (2020) Ecomorphology of the pectoral girdle in anurans (Amphibia, Anura): Shape diversity and biomechanical considerations. Ecology and Evolution 10(20): 11467–11487. https://doi.org/10.1002/ece3.6784.
description: Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - 387723284 and the Wilhelm-Peters-Fonds of the Deutsche Gesellschaft für Herpetologie und Terrarienkunde e.V.
DOI: 10.25592/uhhfdm.1205
title: Crossodactylus caramaschii USNM 318234, unstained CT volume

description: Species: <em>Crossodactylus caramaschii</em>

Collection number: USNM 318234

Institution of origin: National Museum of Natural History, Washington, D.C.

Data: CT volume of unstained specimen

Coverage: full specimen

Scanner: Skyscan1172

Scanning paramters: 49 kV; 200 µA; filter: Al 0.5 mm

Voxel size: 11.86915 µmDataset used in:


 Engelkes, K., Kath, L., Kleinteich, T., Hammel, J. U., Beerlink, A., Haas, A. (2020) Ecomorphology of the pectoral girdle in anurans (Amphibia, Anura): Shape diversity and biomechanical considerations. Ecology and Evolution 10(20): 11467–11487. https://doi.org/10.1002/ece3.6784.
description: Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - 387723284 and the Wilhelm-Peters-Fonds of the Deutsche Gesellschaft für Herpetologie und Terrarienkunde e.V.
DOI: 10.25592/uhhfdm.940
title: Bombina variegata ZMH A06234, unstained CT volume

description: Species: <em>Bombina variegata</em>

Collection number: ZMH A06234

Institution of origin: Zoologisches Museum Hamburg

Data: CT volume of unstained specimen

Coverage: full specimen

Scanner: Skyscan1172

Scanning paramters: 49 kV; 200 µA; filter: Al 0.5 mm

Voxel size: 17.60223 µmDataset used in:


 Engelkes, K., Kath, L., Kleinteich, T., Hammel, J. U., Beerlink, A., Haas, A. (2020) Ecomorphology of the pectoral girdle in anurans (Amphibia, Anura): Shape diversity and biomechanical considerations. Ecology and Evolution 10(20): 11467–11487. https://doi.org/10.1002/ece3.6784.
description: Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - 387723284 and the Wilhelm-Peters-Fonds of the Deutsche Gesellschaft für Herpetologie und Terrarienkunde e.V.
DOI: 10.6075/j0z31ztw
title: Standard Operating Procedure Documents for Coral Reef Ecological Monitoring. In Center for Environmental Imaging Collection

description: This collection contains documents describing methods used by the Sandin Lab to collect standardized coral reef community ecology data. The methods documents and standard operating procedures have been designed to describe the key functional elements of the coral reef ecosystem: major flows of energy, major competitors for space, and principal contributors to biodiversity (with an emphasis on non-cryptic fishes and sessile benthic taxa). The research conducted by the Sandin Lab maintains attendance to detailed taxonomy, but the methods employed herein are not tailored for comprehensive biodiversity assessments. These methods are geared to track changes across space and through time based on insights from observational ecology. In an effort to investigate the mechanistic basis of variability within and among species, however, we also include methods designed to track changes in population densities and potential evidence of adaptation within species and communities.

Efforts have been made to design methods that are accessible, comparable and transferable across a broad user base, including individuals from resource management and research communities. Wherever possible, these methods have incorporated technologically expedited and enhanced methods. Importantly, in order to maximize adoptability of these methods, efforts have been made to optimize the technologies that have been employed throughout so that they are cost effective, precise and easily implemented under a wide range of environmental conditions.

These methods have been developed by the Sandin Lab and partners who are identified within each document along with the suggested citation and DOI. Where appropriate, author correspondence contacts are also provided, and interested parties are encouraged to send inquiries to these contacts directly. As the research portfolio of the Sandin Lab and its collaborators continues to develop and the existing approaches evolve (e.g., with the incorporation of new technologies), many of these methods will be updated, and this collection will grow accordingly. We encourage visitors to refer to this page in the future to access the most up to date methodologies.
DOI: 10.25592/uhhfdm.939
title: Bombina variegata ZMH A06234, unstained CT volume

description: Species: <em>Bombina variegata</em>

Collection number: ZMH A06234

Institution of origin: Zoologisches Museum Hamburg

Data: CT volume of unstained specimen

Coverage: full specimen

Scanner: Skyscan1172

Scanning paramters: 49 kV; 200 µA; filter: Al 0.5 mm

Voxel size: 17.60223 µmDataset used in:


 Engelkes, K., Kath, L., Kleinteich, T., Hammel, J. U., Beerlink, A., Haas, A. (2020) Ecomorphology of the pectoral girdle in anurans (Amphibia, Anura): Shape diversity and biomechanical considerations. Ecology and Evolution 10(20): 11467–11487. https://doi.org/10.1002/ece3.6784.
description: Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - 387723284 and the Wilhelm-Peters-Fonds of the Deutsche Gesellschaft für Herpetologie und Terrarienkunde e.V.
DOI: 10.6075/j0dv1hdr
title: 100 Island Challenge Collection. In Center for Environmental Imaging Collection

description: The goal of this study is to conduct a large-scale natural experiment, investigating the independent and interactive effects of oceanography and human activities in affecting the structure and dynamics of coral reef communities. The natural experimental design uses islands as statistical replicates, as we select focal islands and reefs to span a diversity of combinations of human activity, oceanographic conditions (principally temperature and nutrient delivery), and island geomorphology. Critically, we are controlling for within-island variables by conducting the core surveys within the same habitat type – leeward, forereef habitat at 7-15m depth. 

We employ a collection of standardized approaches to quantify the structure and the workings of each coral reef community. A summary of the methodology follows:

Fishes. We use underwater visual census approaches to enumerate the density, size structure, and species composition of the fish assemblage at each reef. The surveys enable us to quantify critical elements of the size structure, trophic structure, and species diversity. Further, by using techniques of ecological and fisheries science, we provide estimates of potential fisheries production, building off complementary efforts of life history analysis. 

Corals and algae. We use photographic survey techniques to describe the benthic composition from each reef. Photoquadrats are collected to provide raw data on the percent coverage, species composition, and physiological health of corals, algae, and other benthic taxa. Further, we employ novel approaches of underwater large-area ‘photomosaic’ technology to document the spatial structure and competitive dynamics of benthic taxa. This approach generates multiple digital products, including images collected in the field, composite 3D models, 2D orthorectified images of the 3D models, and annotations of the 2D orthorectified images. Our design includes two surveys (separated by 2-3 years) for each site. By re-visiting exact locations and replicating mosaic photography, we have the unprecedented opportunity to track the dynamics of individual corals and patches of algae. In particular, with advanced image analysis we can track how a reef community changes, addressing questions of coral growth, death, and competition that are currently unresolved. 

By combining these image-based data with reliable information about the composition of the fish community, the general oceanography, and the human population dynamics at each location, we can elucidate the conditions that are more (or less) conducive to the maintenance of growing and so-called “healthy” coral reefs.
DOI: 10.6084/m9.figshare.21434024
title: Additional file 5 of MED12 mutation as a potential predictive biomarker for immune checkpoint inhibitors in pan-cancer

description: Additional file 5: Table S1. Detailed clinical information of the five WES cohorts and the MSKCC cohort.
DOI: 10.6084/m9.figshare.21434024.v1
title: Additional file 5 of MED12 mutation as a potential predictive biomarker for immune checkpoint inhibitors in pan-cancer

description: Additional file 5: Table S1. Detailed clinical information of the five WES cohorts and the MSKCC cohort.
DOI: 10.6084/m9.figshare.25308721
title: Prisma-P Checklist for "Does Sex affect Antipsychotic Associated Weight Gain in Patients Being Treated for Psychotic disorders; A Protocol for a Systematic Review"

description: Prisma-P checklist for a systematic review aiming to address the gap in understanding the sex-specific impact of antipsychotic-related weight gain in patients with psychotic disorders.
DOI: 10.6084/m9.figshare.25308721.v1
title: Prisma-P Checklist for "Does Sex affect Antipsychotic Associated Weight Gain in Patients Being Treated for Psychotic disorders; A Protocol for a Systematic Review"

description: Prisma-P checklist for a systematic review aiming to address the gap in understanding the sex-specific impact of antipsychotic-related weight gain in patients with psychotic disorders.
DOI: 10.15468/7hqgz3
title: Suivi Avifaune 2021 - Parc éolien de Piroy

description: Etude de l'avifaune dans le cadre du suivi environnemental du parc éolien de Piroy en 2021.
DOI: 10.15468/e5gkx7
title: Parc éolien de la Forterre-Suivi de l'activité de la Grue cendrée sur le parc éolien de la Forterre

description: Suivi des migrations pré et postnuptiales
DOI: 10.15468/7dqf92
title: DECLARATION DE PROJET EMPORTANT LA MISE EN COMPATIBILITE DU PLUm POUR LA CONSTRUCTION DU COLLEGE DE LEVENS - Oiseaux - Inventaire non protocolé

description: Listes des oiseaux contactés dans le cadre des prospections de terrain réalisées au niveau de l'aire d'étude du projet de collège sur la commune de Levens (06)
DOI: 10.15468/uc4uq4
title: Projet photovoltaïque BA 217-JDD_Faune_DEPOBIO_NEOEN-ANOVA_L93_20230407

description: Relevé Faune / Neoen est lauréat en mars 2021 de l’Appel à Manifestation d’Intérêt lancé par l’ESID d’Ile-de-France dans le cadre du plan gouvernemental « Place au Soleil » visant à augmenter les capacités de production d’énergie électrique d’origine solaire en France. Le Ministère des Armées s’est engagé à mettre à disposition, d’ici la fin de l’année 2022, 2 000 hectares de terrains pour y développer des projets de production d’électricité d’origine photovoltaïque. Le projet photovoltaïque s'implante sur la base arienne 217 et prévoit de se raccorder (sous réserve de l'étude en cours d'Enedis) sur les postes sources proches de Liers (4,5km) ou Loges (5km). Le projet est identifié et soutenu par l'agglomération Coeur d'Essonne et permettrait d'atteindre 35% de l'objectif de développement du photovoltaïque prévu par l'agglomération à horizon 2030. Il permettrait également d'atteindre une production annuelle équivalente à 4 fois la consommation en électricité des communes du Plessis-Pâté, 60% de la consommation de Bretigny-sur-Orge et 8% de la consommation totale de Coeur d'Essonne. En complément du soutien des différentes communes, ce projet assure des retombées environnementales et économiques positives, avec entre autres : un entretien assuré par un pâturage ovin, des mesures environnementales en faveur de la faune et la flore, des créations d'emploi.
DOI: 10.15468/6tmmay
title: Données Ligue pour la protection des oiseaux Centre-Val de Loire-LPO Centre-Val de Loire - Données avifaune ENS Limère (45) - 2021

description: Inventaire avifaunistique de l'ENS des Dolines de Limère, à Ardon (Loiret), réalisé par la LPO Centre-Val de Loire en 2021 pour le compte du Conseil départemental du Loiret.
DOI: 10.15468/8wbqfc
title: Metabarcoding survey of Chironomids and Oligochaetes in Lake Maggiore

description: This data set includes the identified chironomids and oligochaetes in Lake Maggiore and their respective GenBank accession number (AccNumGenBank=the unique identifier for a sequence record). Each row contains a record of a macroinvertebrate taxon from a sample from Lake Maggiore that were proceeded for DNA extraction. All sequences were checked in GenBank through Blast searches to check their identity at the high taxonomic level and confirm that they indeed were from chironomids and oligochaetes. Tha data sheet includes columns with the following labels:<br> 1) eventide, occurrenceID, eventDate, scientificName, taxonRank, kingdom, phylum, subphylum, class, order, family, family, subfamily, tribe, genus, species, decimalLatitude, decimalLongitude, geodeticDatum, countryCode, organismQuantity, organismQuantityType, DNA_sequence (=AccNumGenBank), preparations, target_gene.
DOI: 10.15468/zmmaxh
title: Centrale solaire au sol d'Epierre-Biotope_OISEAU_INV

description: Inventaire des oiseaux / Centrale solaire au sol sur la commune d'Epierre (73) pour une emprise de 3,46 hectares et une puissance attendue de 2298 MWh/an.
DOI: 10.15468/f8vqf8
title: DECLARATION DE PROJET EMPORTANT LA MISE EN COMPATIBILITE DU PLUm POUR LA CONSTRUCTION DU COLLEGE DE LEVENS - Mammifères - Inventaire non standardisé

description: Listes des mammifères contactés dans le cadre des prospections de terrain réalisées au niveau de l'aire d'étude du projet de collège sur la commune de Levens (06)
DOI: 10.15468/vv6b2m
title: 2022_Commune de Correns_1

description: 2022_Commune_Correns_ABC:Commune de Correns
DOI: 10.15468/mmsvsh
title: Projet de serres-tunnels au lieu-dit « Les Malançons» à Sarrians (84)-Inventaire Amphibiens

description: Recueil de données, observations directes, comptage visuel, écoutes sonores
DOI: 10.15468/n24kad
title: Suivi de chantier de la ligne du Revermont (39) - Oiseaux_inventaire

description: Inventaire des oiseaux dans le cadre du suivi de chantier de la ligne du Revermont (39)
DOI: 10.15468/humjkf
title: Parc éolien Eole de la Plaine d'Osne-le-Val - 2021/2022 - AVIFAUNE

description: Suivi environmental de parc éolien (suivi d'activité de l'avifaune et des chiroptères + suivi de la mortalité)
DOI: 10.15468/v5f5n9
title: Parc éolien Provencialis (83) - Suivi mortalité 2022

description: Le jeu de données correspond aux observations de mortalité réalisées lors du suivi spécifique en 2022 par la LPO PACA
DOI: 10.6084/m9.figshare.24055542
title: Predictors of Stigma toward Alcohol Misuse in Mexico

description: <i>Objective</i>: This study explored factors associated with public stigma toward individuals misusing alcohol in Mexico. <i>Methods</i>: A randomized experimental vignette methodology was used to assess multiple domains of substance use-related stigma and their relationship to the gender of the vignette subject and the sociodemographic characteristics of respondents. <i>Results</i>: Although levels of stigma toward women who were misusing alcohol did not differ significantly from stigma toward men misusing alcohol, stigma levels and type of stigma reported varied with the sociodemographic characteristics of respondents. Education level, gender, self-stigma and openness to seeking mental health services were differentially associated with the three stigma domains. <i>Conclusions</i>: Accordingly, targeted community based stigma reduction efforts are needed to decrease stigma toward those misusing alcohol, and to support treatment initiation, ongoing treatment engagement and long term recovery efforts. Suggestions for future research on the relationship between substance use and stigma are offered.
DOI: 10.6084/m9.figshare.24055542.v1
title: Predictors of Stigma toward Alcohol Misuse in Mexico

description: <i>Objective</i>: This study explored factors associated with public stigma toward individuals misusing alcohol in Mexico. <i>Methods</i>: A randomized experimental vignette methodology was used to assess multiple domains of substance use-related stigma and their relationship to the gender of the vignette subject and the sociodemographic characteristics of respondents. <i>Results</i>: Although levels of stigma toward women who were misusing alcohol did not differ significantly from stigma toward men misusing alcohol, stigma levels and type of stigma reported varied with the sociodemographic characteristics of respondents. Education level, gender, self-stigma and openness to seeking mental health services were differentially associated with the three stigma domains. <i>Conclusions</i>: Accordingly, targeted community based stigma reduction efforts are needed to decrease stigma toward those misusing alcohol, and to support treatment initiation, ongoing treatment engagement and long term recovery efforts. Suggestions for future research on the relationship between substance use and stigma are offered.
DOI: 10.15472/04sevj
title: Observaciones de mamíferos de la Universidad del Valle

description: El presente conjunto de datos corresponde a la observación de mamíferos de la Universidad del Valle, estos son de carácter científico y su función es generar, organizar y difundir información referente a la mastofauna, con énfasis en el sur occidente colombiano. En esta publicación se incluyen las observaciones (sin espécimen preservado) que estaban incluidas dentro de la publicación de la colección biológica iniciada en 1979, por el mastozoólogo estadounidense Michael S. Alberico.
DOI: 10.6084/m9.figshare.23531303
title: Supplementary Tables from 300 Million years of coral treaders (Insecta: Heteroptera: Hermatobatidae) back to ocean in the phylogenetic context of Arthropoda

description: Among hundreds of insect families, Hermatobatidae (commonly known as coral treaders) is one of the most unique. They are small, wingless predaceous bugs in the suborder Heteroptera. Adults are almost black in colour, measuring about 5 mm in body length and 3 mm in width. Thirteen species are known from tropical coral reefs or rocky shores, but their origin and evolutionary adaptation to their unusual marine habitat were unexplored. We report here the genome and metagenome of <i>Hermatobates lingyangjiaoensis</i>, hitherto known only from its type locality in the South China Sea. We further reconstructed the evolutionary history and origin of these marine bugs in the broader context of Arthropoda. The dated phylogeny indicates that Hexapoda diverged from their marine sister groups approximately 498 Ma and that Hermatobatidae originated 192 Ma, indicating that they returned to an oceanic life some 300 Myr after their ancestors became terrestrial. Their origin is consistent with the recovery of tropical reef ecosystems after the End-Triassic mass extinction, which might have provided new and open niches for them to occupy and thrive. Our analyses also revealed that both the genome changes and the symbiotic bacteria might have contributed to adaptations necessary for life in the sea.
DOI: 10.6084/m9.figshare.7802675
title: Additional file 1: of Genome wide association study identifies SNPs associated with fatty acid composition in Chinese Wagyu cattle

description: Table S1. Estimates of phenotypic correlations (upper diagonals) and genetic correlation (lower diagonals) between 21 phenotypes in Chinese Wagyu beef cattle. (XLSX 199 kb)
DOI: 10.6084/m9.figshare.7802675.v1
title: Additional file 1: of Genome wide association study identifies SNPs associated with fatty acid composition in Chinese Wagyu cattle

description: Table S1. Estimates of phenotypic correlations (upper diagonals) and genetic correlation (lower diagonals) between 21 phenotypes in Chinese Wagyu beef cattle. (XLSX 199 kb)