cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19095617.v1
title: Supplementary Material for: Influences of vitamin D levels and vitamin D binding protein polymorphisms on non-alcoholic fatty liver disease risk in a Chinese population

description: Introduction: Vitamin D binding protein (VDBP) is correlated with non-alcoholic fatty liver disease (NAFLD) through the biological functions of regulating plasma vitamin D (VD) level and the inflammatory process. Objective: This study aims to investigate the effects of VD level and VDBP gene polymorphisms on the risk of NAFLD in a Chinese population. Methods: Plasma 25-hydroxyvitamin D3 [25(OH)D3] levels were measured and seven VDBP candidate genetic variants (rs222020, rs2282679, rs4588, rs1155563, rs7041, rs16847024, rs3733359) were genotyped among participants in this case-control study. The control group was frequency-matched to NAFLD case group by age and gender. Correlation analysis and multiple linear regression were used to screen determinants of 25(OH)D3 levels. Multivariable unconditional logistic regression was performed to estimate odds ratio (OR) and 95% confidence interval (95% CI). The prediction capability of models containing independent factors was estimated by the area under the receiver operating characteristic curve (AUROC) and Hosmer-Lemeshow test. Results: Age, BMI and TG were independent factors influencing VD levels. Participants with low VD levels had significantly higher prevalence of NAFLD compared to subjects with normal VD levels (P &lt; 0.001). A low VD level contributed to increased risk of NAFLD, independent of metabolic factors known to affect VD levels (adjusted OR = 2.282, 95% CI = 1.422-3.661, P = 0.001). Logistic regression analysis showed that individuals carrying rs7041-G allele had a significantly decreased risk of NAFLD occurrence compared to T allele (additive model: adjusted OR = 0.814, 95% CI = 0.713-0.929, P = 0.002; codominant model: adjusted OR = 0.623, 95% CI = 0.449-0.866, P = 0.005), after adjusting for age, gender, and overweight. Stratification by multiple metabolic disorders did not alter this relationship. Moreover, we developed a simple model including age, gender, metabolic disorders and VDBP SNP to assess NAFLD risk, an AUC of which being 0.817, significantly higher than the model not included VDBP SNP, with Hosmer-Lemeshow test fitting well (P = 0.182). Conclusions: Low plasma VD levels may increase susceptibility to NAFLD, while rs7041-G allele in VDBP contributed to a decreased NAFLD risk among Chinese population. The VDBP variant significantly improved the capability for NAFLD risk assessment, which could be used for early screening and management of NAFLD.
DOI: 10.6084/m9.figshare.21511530.v1
title: Data from "Influence of soil copper and zinc levels on the abundance of methanotrophic, nitrifying, and N<sub>2</sub>O‑reducing microorganisms in drylands worldwide"

description: There are three spreadsheets with data. The spreadsheet "Data" contain raw environmental data used and the pmoA, archaeal and bacterial amoA and nosZI genes abundance. The spreadsheet "Soil properties" contains other informative properties of the sampling sites. The spreadsheet "Metadata" contains the descripton of all variables and units.
DOI: 10.6084/m9.figshare.26072578.v1
title: Corpus data of Chinese news articles related to COVID-19 from 2020 t0 2022 on Xinhua Daily Telegraph

description: The highly contagious Covid-19 pandemic can bring panic and anxiety to the public, producing negative impact on the existing sociopolitical order as a national crisis. In order to maintain and restore national solidarity and cohesiveness in the troubled times, it is common for Chinese official media to mitigate and transform people’s traumatized feelings to emotions of attachment and belongingness to their nation-state. In this paper, corpus-based critical discourse analysis is adopted to analyze the how Chinese national identities are discursively constructed in official newspaper articles in two different stages during Covid-19. Focusing on how nationalism and national identity can be evoked from the portrayal of the US as a dichotomous counterparty of China, and the representation of major social actors in each stage, the paper finds that Chinese national identities are mainly constructed and perpetuated based on intra-national assimilation and inter-national dissimilation.
DOI: 10.6084/m9.figshare.28028162.v3
title: Annotation of Ctenoplusia agnata genome (GCA_041146325.1)

description: 1. General annotation information of Ctenoplusia agnata genome (GCA_041146325.1)2. Annotation of detoxification genes from Ctenoplusia agnata genome- Cytochrome P450s (CYPs), carboxyl/cholinesterases (CCEs), glutathione S-transferases (GSTs), UDP-glucuronosyltransferases (UGTs), and ATP-binding cassette (ABC) transporters<br>Gene Ontology (GO) resultsBLAST nr resultsInterProScan resultsPore-C resultsUsed files for orthovenn3
DOI: 10.6084/m9.figshare.28722146.v1
title: Table_S10.enr_immune_early.csv

description: <b>Table S10. </b>Gene Set Enrichment Analysis (GSEA) in brain tumor-associated immune cells at 7d, as shown in Figure 5I.
DOI: 10.6084/m9.figshare.27685209.v1
title: Cooperative Bargaining-Based Integrated Electricity and Gas System Planning with Carbon Capture, Utilization and Storage

description: dataset
DOI: 10.6084/m9.figshare.6843875.v1
title: Imaging through wavy water surface

description: These two image sequences are acquired through a submerged camera.
DOI: 10.6084/m9.figshare.28342160.v1
title: Cohort Study on food labelling since 1980s till now.

description: Addressing the radical changes in the food labelling industry since 1980s will give insights and recommendations about the future of food labels and how food policies and policymakers have to be in alignment with this critical public health industry. Especially that obesity prevalence has markedly escalated in the last few decades.Lab analysis showed that fat content in the 3 different commercial food product was more or less identical to that found on the labels. Nevertheless with secondary analysis, it has been statistically recorded that some products have higher quality of oils than the others, moreover some of them were vulnerable to rancidity when exposed to mild heat or environmental conditions, e.g. Humidity and Air.The nutritional Analysis revealed that certain products stand out to consumers in exchange to the rest of brands, in accordance to the total energy amounts, but also in terms of fat quality and balanced macronutrients. This to highlight the opportunity and the risks of the core ingredients of some commercial food products.
DOI: 10.6084/m9.figshare.8796449.v1
title: Table S1. Expression of wheat NLR-ID alternative splicing candidate genes available in Wheat Gene Expression Atlas and NCBI databases.

description: The 54 transcripts shown in <b>Figure 3</b> were acquired from the GSE106397 dataset in NCBI and the Wheat Gene Expression Atlas. Cells are colored by expression level, showing differential expression between alternative transcripts of the same gene.
DOI: 10.6084/m9.figshare.13292774.v1
title: Australian Microbiome (AMI) MAGs

description: AMI MAGs
DOI: 10.6084/m9.figshare.28302458.v1
title: GG_ STRINF&NONINF_2010-2021_Masari.xlsx

description: In sub-Saharan Africa (SSA), maize (<i>Zea mays</i> L.) is both a cash crop and an important staple crop. However, <i>Striga</i> <i>hermonthica</i> infection constrains its production and productivity. A total of 159 hybrids from 21 international trials were evaluated under <i>Striga</i>-infested (STRINF) and <i>S</i>triga-non-infested (STRNON) conditions at Mokwa and Abuja, Nigeria, from 2010 to 2021. Generally, substantial progress has been achieved with a good level of repeatability estimates for the early maturing maize hybrid trials evaluated under STRINF and STRNON conditions. The results obtained in the study demonstrated that the breeding strategies adopted during the 12-year breeding period have been effective and that the potential of the trials in the exploration of the genetic potential of the hybrids for commercialization in the SSA for food security and poverty alleviation.
DOI: 10.6084/m9.figshare.1154004.v3
title: Rat CNS Interactome (TF and coTFs)

description: To construct the CNS Interactome, ARACNe was applied to the Cleaner-normalized expression profile obtained from 8 brain regions believed to be relevant in alcohol’s reinforcing properties using the Affymetrix RN230.2 platform. Specifically, the following brain regions were microdissected and analyzed from nondependent and dependent alcohol self-administering rats as well as age-matched alcohol naive rats: (a) medial prefrontal cortex (MPF), (b) shell and (c) core NAc sub-regions, (d) central nucleus (CeA) and (e) basolateral nucleus of the amygdala (BLA), (f) dorsolateral and (g) ventral bed nucleus of the stria terminalis (BNST), and (h) ventral tegmental area (VTA). Transcription factors (TFs) were defined as rat genes annotated as “transcription factor activity” in Gene Ontology and the list of TFs from TRANSFAC. This produced a final list of 898 TFs, from which 898 were present on the Cleaner-mapped expression profile. ARACNe was run using the adaptive partitioning algorithm, which selects the optimal kernel width for calculating the MI threshold of a specified p-value. The MI threshold used by ARACNe (MI &gt;= 0.44068) corresponded to the p-value threshold of 10-8 after 100 bootstrap runs. The resulting CNS Interactome contained 244,276 statistically significant MIs between the 6,716 genes.
DOI: 10.6084/m9.figshare.26095435.v1
title: Supplementary Material for: Thromboelastography-guided antiplatelet therapy for patients with ischemic cerebrocardiovascular diseases: a systematic review and meta-analysis

description: Background: The effectiveness of thromboelastography (TEG)-guided antiplatelet therapy in patients with ischemic cerebrocardiovascular diseases is not well-established. This systematic review evaluates the efficacy and safety of TEG-guided antiplatelet therapy compared to standard treatment in patients with ischemic cerebrocardiovascular diseases.
Methods: Randomized controlled trials (RCTs) and observational studies comparing TEG-guided antiplatelet therapy with standard therapy in patients suffering from ischemic stroke (IS) or coronary artery disease (CAD) were identified. The primary efficacy measure was a composite of ischemic and hemorrhagic events. Secondary efficacy measures included any ischemic events, while safety was assessed by the occurrence of bleeding events.
Results: 10 studies involving 4 RCTs and 6 observational studies with a total of 1,678 patients were included. When considering a composite of ischemic and hemorrhagic events in RCTs, a significant reduction was observed in IS or CAD patients under TEG-guided therapy compared to standard therapy (OR 0.45, 95% CI 0.27 to 0.75, P=0.002). After pooling RCTs and observational studies together, compared to standard antiplatelet therapy, TEG-guided therapy significantly reduced the risk of a composite of ischemic and hemorrhagic events (OR 0.26, 95% CI 0.19 to 0.37; P&lt;0.00001), ischemic events (OR 0.28, 95% CI 0.19 to 0.41; P&lt;0.00001), and bleeding events (OR 0.31, 95% CI 0.16 to 0.62; P=0.0009) in patients with IS or CAD.
Conclusions: TEG-guided antiplatelet therapy appears to be both effective and safe for patients with IS or CAD. These findings support the use of TEG testing to tailor antiplatelet therapy in individuals with ischemic cerebrocardiovascular diseases.
DOI: 10.6084/m9.figshare.3528647.v1
title: Appendix B. Parameter fitting.

description: Parameter fitting.
DOI: 10.6084/m9.figshare.8269736.v1
title: Cleaned Files

description: The results of running the cleandata() function on the raw files. Because the Carelink 670G report includes a limited amount of data, the cleaned file has been manually edited so that only dates 10/17/18 - 10/30/18 are included. <br><br>To compare the function cgmvariables() to the iPro 2 report, parameters aboveexcursionlength = 15 and belowexcursionlength = 15 must be used. <br><br>
DOI: 10.6084/m9.figshare.1559937.v4
title: Discovering Homo naledi

description: Paleoanthropologist Lee Berger recruited geologist Pedro Boshoff to find fossils in well-explored, South African caves. When recreational cavers Rick Hunter and Steven Tucker joined the team and entered the Rising Star cave system, it sparked a new kind of collaborative scientific exploration. ------------------------------------------------------------------------- This file set contains several sizes of an infographic describing the discovery of the species <em>Homo naledi</em>. These posters and materials are available for download, print etc. as long as they are properly attributed to Unbox Science (www.unbox.science). As long as the poster is not altered in any way, no additional attribution is required. All print-related materials are print-ready in PDF format with full bleed included where necessary. Let us know if you'd like any additional paper sizes or layouts. We'd love to hear what you think about the project! Email us at info@unbox.science
DOI: 10.6084/m9.figshare.9891995.v1
title: Metadata record for: flEECe, an energy use and occupant behavior dataset for net-zero energy affordable senior residential buildings

description: This dataset contains key characteristics about the data described in the Data Descriptor flEECe, an energy use and occupant behavior dataset for net-zero energy affordable senior residential buildings. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.27303840.v4
title: data for patients participated to fill questionnaire that evaluate the knowledge and perceptions regarding third molar extraction.

description: Evaluation of Knowledge and Perception of the Third Molar Extraction Procedure Among Patients in the Eastern Province, Saudi Arabia: A Cross-Sectional Study. the data illustrate 409 responses for patients participated to fill translated Arabic questionnaire that assessing the knowledge and perceptions of patients regarding third molar extraction.
DOI: 10.6084/m9.figshare.1528209.v1
title: Urban pollinator project

description: This is a project whose goal was to provide the City of Iowa City, IA with information about how urban bee diversity compares across neighborhoods and public sites and how bee diversity is related to floral diversity. Pan trapping and sweep netting were adopted to collect bees in the field followed by lab observation on genus and gender. Bee diversity was correlated to floral diversity along urban-rural gradient.
DOI: 10.6084/m9.figshare.19165082.v1
title: Data files for a scRNA-seq project of rat testicular cells

description: This dataset contains 2 data files. 1) a Zip file containing 5 mtx data files processed from a scRNA-seq study of rat testis; 2) an Excel file containing differentially expressed gene (DEG) list of 7 cell types.
DOI: 10.6084/m9.figshare.26114503.v1
title: Raw data

description: Background: Matrix metalloproteinases (MMPs) play an important role in the pathophysiology of atherosclerosis. Reportedly, statins can decrease MMP activity in patients with atherosclerotic cardiovascular disease, but this effect has not been studied in healthy individuals. Methods: MMPs 2, 7, and 9 and several other parameters were measured before and after a four-week course of moderate-dose atorvastatin (20mg/day) in 21 healthy individuals. Results: Atorvastatin treatment resulted in lower total cholesterol, LDL-cholesterol, non-HDL-cholesterol, and triglycerides (p&lt;0.001 for all), but higher levels of plasma enzymes AST, ALT, CK, and LDH (p&lt;0.05 for all). No effect of atorvastatin on plasma MMPs median concentrations was recorded. Before treatment, moderate positive significant correlations were found between MMP-7 and age, blood lipids, and blood count-derived inflammatory markers. Pre-treatment MMP-7 was best predicted by the total cholesterol-to-HDL cholesterol ratio in a remnant cholesterol-weighted least squares regression model. After atorvastatin treatment, MMP-7 no longer correlated with these markers. Conclusions: While the effect of statins on plasma MMPs in atherosclerosis is controversial, short-term moderate-dose atorvastatin treatment does not seem to affect levels of MMPs 2, 7, and 9 in healthy individuals. However, an intriguing correlation between MMP-7 and atherosclerosis-related lipid and inflammatory biomarkers seems to be disrupted by atorvastatin, possibly via pleiotropic effects.
DOI: 10.6084/m9.figshare.28577492.v1
title: MERRA2 Daily AR Dataset

description: MERRA2 Daily AR Dataset
DOI: 10.6084/m9.figshare.5688622.v1
title: Mozdeh gender detection accuracy and bias for YouTube commenters

description: This file estimates the accuracy of gender detection by the software Mozdeh, which uses a list of first names recorded at least 90% by males or females in the 1990 US census. The document shows that Mozdeh finds more males than females, introducing a small bias into the results.<br>The results are based on the names of school age children, probably dominated by the UK and English-speaking countries. Different biases can be expected for other countries and demographics.
DOI: 10.6084/m9.figshare.27013480.v1
title: A dataset of allele genes of <i>Salix brachista</i>

description: Allele genes list of high-quality haplotype genome <i>Salix brachista</i>.
DOI: 10.6084/m9.figshare.5008286.v1
title: Seed Entities

description: This is the list of seed entities. <br>
DOI: 10.6084/m9.figshare.12134619.v1
title: Atmospheric circulation variations in southern central Asia since 800 ka revealed by loess-paleosol sequences in Tajikistan

description: This dataset includes the depth and age sequences of loess grain size &gt;25 mm fraction (GT25), Lightness and frequency-dependent magnetic susceptibility (χ<sub>fd</sub>) in Darri Kalon (DK) section of Tajikistan.
DOI: 10.6084/m9.figshare.23800497.v2
title: Metropolitan-and-rural-health-districts-COVID-19-data-for-NSW-Australia

description: Dataset used for the paper "Modelling COVID-19 pandemic control strategies in metropolitan and rural health districts in New South Wales, Australia" published in the journal 'Scientific Reports'.
DOI: 10.6084/m9.figshare.25124807.v2
title: Supplementary Material for: Practical requirements for the development of an advanced cardiorenal unit

description: Background: Heart failure is frequently associated with kidney disease, and patients with kidney disease are at increased risk of heart failure. The co-occurrence of both entities not only significantly increases morbidity and mortality, but also complicates therapy. 
Summary: Cardiorenal syndrome often requires a broad, comprehensive, and multidisciplinary approach. As a result, a need has arisen to create specialized cardiorenal units that allow for rigorous and personalized management of this condition. Moreover, in some cases, cardiorenal syndrome is more complex owing to an acute and critical situation that requires the concept of cardiorenal unit to be extended towards advanced diagnostic and therapeutic positions, thus confirming the need for an advanced cardiorenal unit. The creation of these units constitutes a real challenge, necessitating a specific multilevel action plan, covering governance and management, type of patient, personnel requirements, service portfolio, care process, information systems, and other resources. Specific lines of action must be proposed for each of the relevant points in order to facilitate development of these units, together with continuous evaluation of unit activity through specific indicators, and to detect areas for improvement.
DOI: 10.6084/m9.figshare.22525099.v4
title: Figures

description: Data and code to recreate main figures in Identifying Properties of Pattern Completion Neurons in a Computational Model of the Visual Cortex
DOI: 10.6084/m9.figshare.27186189.v1
title: Enhancing Effects of Future Orientation and Construal Level on Green Consumption

description: Enhancing Effects of Future Orientation and Construal Level on Green Consumption
DOI: 10.6084/m9.figshare.20647452.v2
title: Genome assembly and gene annotations of Cinnamomum camphora

description: Genome assembly and gene annotations of a 500-year-old Cinnamomum camphora from Wuxue city, Hubei Province, China
DOI: 10.6084/m9.figshare.24866841.v1
title: DREP

description: a set of non-redundant dereplicated genomes from the zebrafish intestine
DOI: 10.6084/m9.figshare.13851263.v1
title: Supplementary Material for: Fibroblast Growth Factor 21 Predicts and Promotes Vascular Calcification in Haemodialysis Patients

description: <b><i>Background:</i></b> Cardiovascular disease (CVD) is the leading cause of death in haemodialysis (HD) patients. Vascular calcification (VC) is dramatically accelerated and is strongly associated with CVD events and mortality in HD patients. VC coexists with osteoporosis in many studies. Fibroblast growth factor 21 (FGF21) which is known as an adipocytokine is a new hypoglycemic strategy and is inversely related to bone mineral density. <b><i>Methods:</i></b> To evaluate the contribution of FGF21 to VC in HD patients, we detected circulating FGF21 levels and measured the whole thoracic aorta calcification scores (TACS) and calcification scores of the 3 segments of thoracic aorta, including ascending thoracic aorta (ATACS), aortic arch (AoACS), and descending thoracic aorta (DTACS) of our HD patients in this cross-sectional study. In addition, we pre-incubated human aortic endothelial cells (HAECs) with FGF21 in the presence or absence of parathyroid hormone (PTH) in vitro. <b><i>Results:</i></b> The median serum FGF21 level in HD patients was 11-fold higher than that in healthy controls. Ln(FGF21) was positively correlated with Ln(TACS+1), Ln(ATACS+1), Ln(AoACS+1), and Ln(DTACS+1), respectively, in HD patients. Serum FGF21 was independently associated with TACS and ATACS, AoACS, and DTACS. FGF21 which was combined with age, calcium, and intact PTH demonstrated a high area under the curve of 0.84 with optimal sensitivity (84%) and specificity (71%) for the prediction of VC in HD patients. Our vitro results showed that FGF21 enhanced the calcification effect of PTH on HAECs by increasing calcium deposition and endothelial-to-mesenchymal transition. <b><i>Conclusions:</i></b> Circulating FGF21 was notably higher and was a potential predictor and promoter of VC in HD patients.
DOI: 10.6084/m9.figshare.26636854.v1
title: <b>Differences in Emu diet driven by C3: C4 abundance</b>

description: Stable isotopes of emus and geographic patterns
DOI: 10.6084/m9.figshare.28557746.v1
title: CF-2023-I-2253_Estudio1a.csv

description: This dataset comes from a Study comparing a generalization task with diagrams and tables
DOI: 10.15468/dl.qg6rdu
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sindora coriacea (Baker) Prain"
 ]
}

 The dataset includes 75 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034354-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zgs2t6
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sindora velutina Baker"
 ]
}

 The dataset includes 84 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034369-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24218622.v1
title: Body weight

description: Comparing CFA (complete freund adjuvant) and MIA (monosodium iodoacetate) to induce arthritis