cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/cct5z64
title: CCDC 750516: Experimental Crystal Structure Determination

description: Related Article: Zhenghua Guo, Lianzhi Li, Tao Xu, Jinghong Li, Daqi Wang|2009|Acta Crystallogr.,Sect.E:Struct.Rep.Online|65|m1158|doi:10.1107/S1600536809034278
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccsb49j
title: CCDC 724727: Experimental Crystal Structure Determination

description: Related Article: S.Hayami, D.Urakami, S.Sato, Y.Kojima, K.Inoue, M.Ohba|2009|Chem.Lett.|38|490|doi:10.1246/cl.2009.490
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.24303343
title: Additional file 1 of Comparative transcriptome analysis of high- and low-embryogenic Hevea brasiliensis genotypes reveals involvement of phytohormones in somatic embryogenesis

description: Additional file 1: Supplementary Table 1. Relative phytohormone based on UPLC-ESI-MS/MS in YT and HT genotypes at four stages of somatic embryogenesis of Hevea genotypes YT and RT.
DOI: 10.15468/dl.cn6cxb
title: Occurrence Download

description: A dataset containing 264 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ACD3091"
 ]
}

 The dataset includes 264 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068463-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26733666
title: Additional file 1 of Do fish gut microbiotas vary across spatial scales? A case study of Diplodus vulgaris in the Mediterranean Sea

description: Additional file1.
DOI: 10.6084/m9.figshare.26733666.v1
title: Additional file 1 of Do fish gut microbiotas vary across spatial scales? A case study of Diplodus vulgaris in the Mediterranean Sea

description: Additional file1.
DOI: 10.6084/m9.figshare.26729734
title: Raw data for Spatula tomato metabolome.xlsx

description: The raw data for the Spatula tomato metabolome comprises non-targeted metabolomic analysis of tomato fruit cuticles and stable loss-of-function tomato lines using CRISPR/Cas9 technology. The dataset contains putative annotations and unknowns reported as pairs of retention time (minutes)_<i>m/z</i> values. These were obtained using UPLC-Q-TOF Mass Spectrometry in positive and negative ionization modes. Samples are cuticles of Red Mature (RM) and Green Mature (GM) fruits extracted with methanol (80% aqueous). The spreadsheet cells contain normalized abundances of all metabolites detected. The dataset includes four groups of samples: RM Spat, RM wild type, GM Spat, and GM wild type; these were codified in five biological replicates noted as, e.g., RMSpat1, RMSpat2, RMSpat3, RMSpat4, RM Spat5, QC are quality control samples.
DOI: 10.6084/m9.figshare.26729734.v1
title: Raw data for Spatula tomato metabolome.xlsx

description: The raw data for the Spatula tomato metabolome comprises non-targeted metabolomic analysis of tomato fruit cuticles and stable loss-of-function tomato lines using CRISPR/Cas9 technology. The dataset contains putative annotations and unknowns reported as pairs of retention time (minutes)_<i>m/z</i> values. These were obtained using UPLC-Q-TOF Mass Spectrometry in positive and negative ionization modes. Samples are cuticles of Red Mature (RM) and Green Mature (GM) fruits extracted with methanol (80% aqueous). The spreadsheet cells contain normalized abundances of all metabolites detected. The dataset includes four groups of samples: RM Spat, RM wild type, GM Spat, and GM wild type; these were codified in five biological replicates noted as, e.g., RMSpat1, RMSpat2, RMSpat3, RMSpat4, RM Spat5, QC are quality control samples.
DOI: 10.6084/m9.figshare.24303310
title: Additional file 1 of Dynamic roles of small RNAs and DNA methylation associated with heterosis in allotetraploid cotton (Gossypium hirsutum L.)

description: Additional file 1: Table S1. Mean of mid and better parent heterosis observed for yield traits in two location and two-year field experimentation. Table S2. Statistics of RNA sequencing data production. Table S3. Overlapping differentially expressed genes among the in MH, SM, and 1DPA in hybrid. Table S4. Statistics of small RNA sequencing data production. Table S5.  Number of the non-additively expressed genes had siRNA clusters in coding regions or 2kb flanking regions in MH, SM, and 1DPA. Table S6a. List of known differentially expressed miRNA in F1 and its Parents. S6b. List of target prediction of known miRNAs. S6c. List of target prediction of novel miRNAs. Table S7. Alignment summary statistics of whole-genome bisulfite sequencing (WGBS). Table S8. List of common DMRs among parental lines and hybrids. Table S9. Association of DMRs and sRNA among hybrid and its parental lines. Table S10. REVIGO combines the biological process GO with hybrid MPV DEGs. The unified terms of REVIGO GO are organized by major groups. To make understanding the data even easier, clusters are grouped into "main clusters" with broad categories. Table S11. Details of the primers used to validate RNA-seq and bisulfite sequencing data.
DOI: 10.6084/m9.figshare.24303310.v1
title: Additional file 1 of Dynamic roles of small RNAs and DNA methylation associated with heterosis in allotetraploid cotton (Gossypium hirsutum L.)

description: Additional file 1: Table S1. Mean of mid and better parent heterosis observed for yield traits in two location and two-year field experimentation. Table S2. Statistics of RNA sequencing data production. Table S3. Overlapping differentially expressed genes among the in MH, SM, and 1DPA in hybrid. Table S4. Statistics of small RNA sequencing data production. Table S5.  Number of the non-additively expressed genes had siRNA clusters in coding regions or 2kb flanking regions in MH, SM, and 1DPA. Table S6a. List of known differentially expressed miRNA in F1 and its Parents. S6b. List of target prediction of known miRNAs. S6c. List of target prediction of novel miRNAs. Table S7. Alignment summary statistics of whole-genome bisulfite sequencing (WGBS). Table S8. List of common DMRs among parental lines and hybrids. Table S9. Association of DMRs and sRNA among hybrid and its parental lines. Table S10. REVIGO combines the biological process GO with hybrid MPV DEGs. The unified terms of REVIGO GO are organized by major groups. To make understanding the data even easier, clusters are grouped into "main clusters" with broad categories. Table S11. Details of the primers used to validate RNA-seq and bisulfite sequencing data.
DOI: 10.6084/m9.figshare.24303454
title: Additional file 2 of Robotic ureteral reconstruction for benign ureteral strictures: a systematic review of surgical techniques, complications and outcomes

description: Supplementary Material 2
DOI: 10.25934/pr00010430
title: AMR Data Challenge: Molecular epidemiology of beta-lactamase producing pathogens in Sub-Saharan Africa

description: We are writing to express our interest in the AMR Data challenge to unravel solutions to the burden of antimicrobial resistance (AMR), especially in Sub-Saharan Africa through molecular epidemiology. Molecular epidemiology has emerged as an innovative, highly precise and accurate surveillance approach to track the occurrence and spread of resistant pathogens at the genomic level. This will shed light on the genetic and structural evolution of beta-lactamase in pathogens of public health concern, hence guiding the development of contextualized interventions to curb them. 
Beta-lactamases are enzymes that confer antibiotic resistance by digesting the beta-lactam antibiotics, rendering them ineffective. This has been highly attributable to antibiotic-resistant gram-negative bacteria, which have significantly impacted public health security. Several studies indicate that SSA is the most highly hit region by antibiotic resistance due to a myriad of challenges such as inadequate surveillance and monitoring. This study will generate more data that will support clinical and epidemiological decision-making as well as the formulation and implementation of relevant policies.
The main goal of this study is to identify the most prevalent beta-lactamase-producing pathogens in Sub-Saharan Africa (SSA), and devise innovative and effective strategies to combat them. The study also intends to establish the commonest biomarker(s) and their expression pathways in beta-lactamase-producing bacteria prevalent in SSA, which will support research and development of multi-strain vaccines, therapeutics, and diagnostics. This study will utilize the data in the antibiotics and pathogens ATLAS database from Pfizer in combination with additional genomic pathogen datasets from the National Center for Biotechnology Information (NCBI). An artificial intelligence-assisted bioinformatics pipeline will be developed to analyze the data and interpret the findings. We believe that our study will generate useful insights for the understanding and mitigation of beta-lactamase-positive pathogens in SSA and beyond.
DOI: 10.6084/m9.figshare.26626504.v1
title: Additional file 2 of Panicle transcriptome of high-yield mutant indica rice reveals physiological mechanisms and novel candidate regulatory genes for yield under reproductive stage drought stress

description: Additional file 2: Table S1A. Field evaluations of MTU1010 and 5 mutants (MM11, MM151, MM152, MM155 and MM73) for Yield attributes. Table S1B. Field evaluations of MTU1010 and MM11 under drought stress during winter 2018-19. TableS1C. Pot culture evaluations of MTU1010 and MM11 under drought stress. Table S2A. Summary of filtered and mapped reads for RNA seq sample. Table S2B. DEGs in response to Drought stress in MTU1010 (WT) and MM11 (Mutant). Table S2C. GO term annotation and categorization of biological processes for DEGs. Table S2D. GO enrichment of drought (D), yield under drought (YD) and yield (Y) DEGs. Table S3A. Tuxnet RTP-STAR output for Yield, drought and yield under drought DEGs. Table S3B. Overlapping TF-target interactions between tuxnet RTP-STAR output and MEME-AME analysis. Table S4A. Statistical calculations for RT-qPCR data assesment. Table S4B. Chromosomal locations and identifiers of each QTL analysed. Table S4C. List of primer sequences used for RT-qPCR analysis. The F and R represents forward and reverse primer sequences of each gene.
DOI: 10.6084/m9.figshare.24303346.v1
title: Additional file 1 of Comparative analysis of flavonoid metabolites from different parts of Hemerocallis citrina

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26626504
title: Additional file 2 of Panicle transcriptome of high-yield mutant indica rice reveals physiological mechanisms and novel candidate regulatory genes for yield under reproductive stage drought stress

description: Additional file 2: Table S1A. Field evaluations of MTU1010 and 5 mutants (MM11, MM151, MM152, MM155 and MM73) for Yield attributes. Table S1B. Field evaluations of MTU1010 and MM11 under drought stress during winter 2018-19. TableS1C. Pot culture evaluations of MTU1010 and MM11 under drought stress. Table S2A. Summary of filtered and mapped reads for RNA seq sample. Table S2B. DEGs in response to Drought stress in MTU1010 (WT) and MM11 (Mutant). Table S2C. GO term annotation and categorization of biological processes for DEGs. Table S2D. GO enrichment of drought (D), yield under drought (YD) and yield (Y) DEGs. Table S3A. Tuxnet RTP-STAR output for Yield, drought and yield under drought DEGs. Table S3B. Overlapping TF-target interactions between tuxnet RTP-STAR output and MEME-AME analysis. Table S4A. Statistical calculations for RT-qPCR data assesment. Table S4B. Chromosomal locations and identifiers of each QTL analysed. Table S4C. List of primer sequences used for RT-qPCR analysis. The F and R represents forward and reverse primer sequences of each gene.
DOI: 10.6084/m9.figshare.24303454.v1
title: Additional file 2 of Robotic ureteral reconstruction for benign ureteral strictures: a systematic review of surgical techniques, complications and outcomes

description: Supplementary Material 2
DOI: 10.15468/dl.n7pcdq
title: Occurrence Download

description: A dataset containing 287 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Canada",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Poa pratensis subsp. alpigena (Lindm.) Hiitonen"
 ]
}

 The dataset includes 287 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068465-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24303346
title: Additional file 1 of Comparative analysis of flavonoid metabolites from different parts of Hemerocallis citrina

description: Supplementary Material 1
DOI: 10.15468/dl.j6n568
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.237 -33.164246, 148.243737 -33.164246, 148.243737 -33.157508, 148.239245 -33.157508, 148.239245 -33.159754, 148.237 -33.159754, 148.237 -33.164246)), ((148.237 -33.164246, 148.234754 -33.164246, 148.234754 -33.173229, 148.230262 -33.173229, 148.230262 -33.177721, 148.228016 -33.177721, 148.228016 -33.186704, 148.223525 -33.186704, 148.223525 -33.18895, 148.221279 -33.18895, 148.221279 -33.193441, 148.223525 -33.193441, 148.223525 -33.195687, 148.228016 -33.195687, 148.228016 -33.193441, 148.230262 -33.193441, 148.230262 -33.186704, 148.234754 -33.186704, 148.234754 -33.182212, 148.237 -33.182212, 148.237 -33.179966, 148.239245 -33.179966, 148.239245 -33.166492, 148.237 -33.166492, 148.237 -33.164246)))"
 ]
}

 The dataset includes 50 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068464-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26580545
title: Additional file 3 of Whole genome sequencing to study antimicrobial resistance and RTX virulence genes in equine Actinobacillus isolates

description: Additional file 3. Overview of available MLST schemes for some members of the Pasteurellaceae family.
DOI: 10.6084/m9.figshare.26580548
title: Additional file 4 of Whole genome sequencing to study antimicrobial resistance and RTX virulence genes in equine Actinobacillus isolates

description: Additional file 4. Overview of identified RTX and RTX toxin-related proteins from all used WGS genomes. Percentages represent protein homologies.
DOI: 10.6084/m9.figshare.26580539
title: Additional file 1 of Whole genome sequencing to study antimicrobial resistance and RTX virulence genes in equine Actinobacillus isolates

description: Additional file 1. Overview of used WGS data for Actinobacillus spp. strains, including accessions, genome QC, and excluded strains based on divergence.
DOI: 10.6084/m9.figshare.26580542.v1
title: Additional file 2 of Whole genome sequencing to study antimicrobial resistance and RTX virulence genes in equine Actinobacillus isolates

description: Additional file 2. Overview of rMLST analysis results for all used WGS genomes. Whenever percentages do not add up to 100%, not all ribosomal gene sequences could be proper classified or identified in the used genome.
DOI: 10.15468/dl.t2mrzx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.872561 -33.186704, 148.872561 -33.193441, 148.874807 -33.193441, 148.874807 -33.186704, 148.872561 -33.186704)), ((148.874807 -33.193441, 148.874807 -33.195687, 148.881544 -33.195687, 148.881544 -33.193441, 148.874807 -33.193441)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068467-240626123714530/datasets/export for details.
DOI: 10.15468/dl.fry38z
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alcockpenaeopsis hungerfordii (Alcock, 1905)"
 ]
}

 The dataset includes 44 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068468-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00010431
title: Surveillance of colistin resistance among clinical isolates in low middle income countries and challenge of data utilization to inform decision makers under umbrella of one health approach

description: Antimicrobial resistance (AMR) is an urgent global public health threat to human, animal and environmental health.The inappropriate use of antimicrobials in human health care and animal production is a major driver of AMR.Colistin has regained importance as a last-resort treatment against multi-drug-resistant Gram-negative bacteria. However, colistin resistance has been reported in various Enterobacteriaceae species isolated from several sources. It is caused by expression of plasmid-encoded MCR enzymes that spread worldwide.). So, our study aimed to investigate the characterization and incidence of the colistin resistance, and corrective actions should be taken.
DOI: 10.6084/m9.figshare.26733798
title: Additional file 1 of Transcriptome analysis reveals the key role of overdominant expression of photosynthetic and respiration-related genes in the formation of tobacco(Nicotiana tabacum L.) biomass heterosis

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26733798.v1
title: Additional file 1 of Transcriptome analysis reveals the key role of overdominant expression of photosynthetic and respiration-related genes in the formation of tobacco(Nicotiana tabacum L.) biomass heterosis

description: Supplementary Material 1
DOI: 10.15468/dl.snh3s5
title: Occurrence Download

description: A dataset containing 146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Canada",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Poa pratensis subsp. colpodea (Fr.) Tzvelev"
 ]
}

 The dataset includes 146 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068469-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5518/146
title: Data associated with 'Frequency tunability and spectral control in terahertz quantum cascade lasers with phase-adjusted finite-defect-site photonic lattices’

description: This dataset contains experimental data presented in the paper titled 'Frequency tunability and spectral control in terahertz quantum cascade lasers with phase-adjusted finite-defect-site photonic lattices'. The effect of finite-defect-site photonic lattices (PLs) on the spectral emission of terahertz (THz) frequency quantum cascade lasers (QCLs), is studied both theoretically and experimentally. A central π-phase adjusted defect is incorporated into the PL to slectively favor emission within the photonic bandgap. The effect of the PL duty cycle and the longitudinal position of such PLs relative the QCL cavity is also investigated, and is used to demonstrate three distinct spectral behaviors: single mode emission from QCLs in the range 2.2−5 THz, with a side-mode suppression ratio of 40 dB and exhibiting continuous frequency tuning over &gt;8 GHz; discrete tuning between two engineered emission modes separated by ~40 GHz; and multiple-mode emission with an engineered logitudinal frequency spacing between the emission lines.
DOI: 10.15468/dl.uzstua
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.859705 -33.18895, 147.859705 -33.195687, 147.866443 -33.195687, 147.866443 -33.193441, 147.861951 -33.193441, 147.861951 -33.18895, 147.859705 -33.18895))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068470-240626123714530/datasets/export for details.
DOI: 10.15468/dl.zvgu8t
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhododendron dasycladoides Hand.-Mazz."
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068471-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26733843
title: Additional file 1 of Prognostic value of red blood cell distribution width to albumin ratio for predicting mortality in adult patients meeting sepsis-3 criteria in intensive care units

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26733843.v1
title: Additional file 1 of Prognostic value of red blood cell distribution width to albumin ratio for predicting mortality in adult patients meeting sepsis-3 criteria in intensive care units

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26733858
title: Additional file 6 of Prognostic value of red blood cell distribution width to albumin ratio for predicting mortality in adult patients meeting sepsis-3 criteria in intensive care units

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.26733858.v1
title: Additional file 6 of Prognostic value of red blood cell distribution width to albumin ratio for predicting mortality in adult patients meeting sepsis-3 criteria in intensive care units

description: Supplementary Material 6
DOI: 10.5281/zenodo.12807080
title: Electrocatalytic Nitrogen Reduction in Continuous-Flow Cell via Water Oxidation at Ambient Conditions: Promising for Ammonia or Diazene?
DOI: 10.5281/zenodo.12807081
title: Electrocatalytic Nitrogen Reduction in Continuous-Flow Cell via Water Oxidation at Ambient Conditions: Promising for Ammonia or Diazene?