cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6662372.v1
title: The effectiveness of multi-dimensional resilience rehabilitation programs after traumatic physical injuries: a systematic review and meta-analysis

description: <b>Objective:</b> To synthesize evidence of the effectiveness of socio-ecological resilience rehabilitation programs on returning to work (RTW), self-efficacy, and stress mitigation following traumatic physical injuries. <b>Methods:</b> PubMed, Scopus, Proquest, Cinahl, Web of Science, Clinical Trials Database, and the Cochrane Central Register of Controlled Trials databases were searched. Methodological quality was assessed using the PEDro tool. <b>Study selection:</b> Randomized interventions aimed at promoting resilience. <b>Data extraction:</b> Twenty one studies were reviewed (11,904 participants). Data from 19 studies of high methodological quality were pooled using a random-effects meta-analysis. Mean differences for continuous outcomes and risk ratios for binary outcomes were calculated. <b>Data synthesis:</b> Resilience rehabilitation programs significantly increased the likelihood of ever RTW (OR 2.09, 95% CI 0.99–4.44, <i>p</i> = 0.05), decreased the number of days taken to return to work (mean difference –7.80, 95% CI –13.16 to –2.45, <i>p</i> ≤ 0.001), and increased total self-efficacy scores (mean difference 5.19, 95% CI 3.12–7.26, <i>p</i> &lt; 0.001). Subgroup analyses found that favorable return to work outcomes resulted from programs involving workplace support (<i>p</i> &lt; 0.001) and for people with musculoskeletal or orthopedic injuries (<i>p</i> = 0.02). <b>Conclusions:</b> Compared to rehabilitation programs providing standard care following injuries, programs aimed at developing resilience could improve reemployment outcomes and self-efficacy.Implications for rehabilitationIndividual resilience may be an important factor promoting functional recovery after traumatic injury.Resilience rehabilitation programs are effective in enabling patients’ return to work and increasing their self efficacy. In particular, programs involving the workplace are important components for enabling optimal work participation outcomes. Individual resilience may be an important factor promoting functional recovery after traumatic injury. Resilience rehabilitation programs are effective in enabling patients’ return to work and increasing their self efficacy. In particular, programs involving the workplace are important components for enabling optimal work participation outcomes.
DOI: 10.6084/m9.figshare.6662468.v1
title: LINC00152 promotes cell cycle progression in hepatocellular carcinoma via miR-193a/b-3p/CCND1 axis

description: Long intergenic non-coding RNA 00152 (LINC00152) is aberrantly expressed in various human malignancies and plays an important role in the pathogenesis. Here, we found that LINC00152 is upregulated in hepatocellular carcinoma (HCC) tissues as compared to adjacent non-neoplastic tissues; gain-and-loss-of-function analyses in vitro showed that LINC00152 facilitates HCC cell cycle progression through regulating the expression of CCND1. LINC00152 knockdown inhibits tumorigenesis in vivo. MS2-RIP analysis indicated that LINC00152 binds directly to miR-193a/b-3p, as confirmed by luciferase reporter assays. Furthermore, ectopic expression of LINC00152 partially halted the decrease in CCND1 expression and cell proliferation capacity induced by miR-193a/b-3p overexpression. Thus, LINC00152 acts as a competing endogenous RNA (ceRNA) by sponging miR-193a/b-3p to modulate its target gene, CCND1. Our findings establish a ceRNA mechanism regulating cell proliferation in HCC via the LINC00152/miR-193a/b-3p/CCND1 signalling axis, and identify LINC00152 as a potential therapeutic target for HCC.
DOI: 10.6084/m9.figshare.14526798
title: Tectonic-geomorphology and prehistoric earthquakes of the West Helanshan fault, West Ordos, and its implications for regional tectonics and seismic hazard

description: This data resposity includes two high-resolution digital elevation models (DEMs) derived from drone images using structure from motion (SfM) technique, a KMZ file showing detailed fault traces, and a 14C dating report created by Beta Analystic Radiocarbon Dating Laboratory.
DOI: 10.6084/m9.figshare.24126546.v1
title: Data

description: Nitrogen stocks and explanatory variables among boreal wildfire chronosequences.
DOI: 10.6084/m9.figshare.9808601
title: Additional file 10: of Using a transcriptome sequencing approach to explore candidate resistance genes against stemphylium blight in the wild lentil species Lens ervoides

description: Table S8. Primer information for 16 genes used in qPCR validation. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.9808601.v1
title: Additional file 10: of Using a transcriptome sequencing approach to explore candidate resistance genes against stemphylium blight in the wild lentil species Lens ervoides

description: Table S8. Primer information for 16 genes used in qPCR validation. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.9808619
title: Additional file 2: of Using a transcriptome sequencing approach to explore candidate resistance genes against stemphylium blight in the wild lentil species Lens ervoides

description: Table S1. GO enrichment analysis of common stemphylium blight-responsive genes. (XLSX 216 kb)
DOI: 10.6084/m9.figshare.9808619.v1
title: Additional file 2: of Using a transcriptome sequencing approach to explore candidate resistance genes against stemphylium blight in the wild lentil species Lens ervoides

description: Table S1. GO enrichment analysis of common stemphylium blight-responsive genes. (XLSX 216 kb)
DOI: 10.6084/m9.figshare.16621765.v2
title: Transcriptome analysis and genetic diversity of <i>Allium victorialis</i> germplasms from the Changbai Mountains

description: The Changbai Mountains comprise one of the main distribution areas of <i>A. victorialis</i> in China, and this species is endangered owing to habitat changes and overexploitation. However, <i>A. victorialis</i> germplasms have not been systematically collected and studied. The aims of this study were to obtain some detailed genetic information, analyze the genetic diversity, and further promote the protection of <i>A. victorialis</i> germplasms from the Changbai Mountains. Transcriptomic analysis was performed with six <i>A. victorialis</i> samples collected from the Changbai Mountains. At least 146,759 genes for each sample were obtained after performing <i>de novo</i> assembly of the RNA-seq data, and at least 92% of these genes were found to have only one mRNA isoform. These sequences and their functional annotations provided a large-scale genetic resource of this species. Phylogenetic analysis showed that <i>A. victorialis</i> was genetically distant from some related species, e.g. <i>Allium sativum</i>, <i>Allium fistulosum</i>, and <i>Allium cepa</i>, but genetically close to <i>Allium tuberosum</i>. The two <i>A. victorialis</i> var. <i>listera</i> samples were phylogenetically separated from the other four samples, and these two samples should be regarded as <i>Allium listera</i>. In addition, two KASP markers for discriminating the Dongfeng samples from the other four <i>A</i>. <i>victorialis</i> samples were successfully developed. This study lays the foundation for future studies on the genetic diversity and evolution of <i>Allium</i> species, as well as for the conservation of <i>A. victorialis</i> germplasms from the Changbai Mountains and other populations of this species.
DOI: 10.6084/m9.figshare.9808628
title: Additional file 3: of Using a transcriptome sequencing approach to explore candidate resistance genes against stemphylium blight in the wild lentil species Lens ervoides

description: Table S2. Top enriched GO terms of common stemphylium blight-responsive genes. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.9808628.v1
title: Additional file 3: of Using a transcriptome sequencing approach to explore candidate resistance genes against stemphylium blight in the wild lentil species Lens ervoides

description: Table S2. Top enriched GO terms of common stemphylium blight-responsive genes. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.9808634
title: Additional file 4: of Using a transcriptome sequencing approach to explore candidate resistance genes against stemphylium blight in the wild lentil species Lens ervoides

description: Table S3. Information of 1284 DEGs identified between Lens ervoides RILs LR-66-637 and LR-66-577 across 48, 96 and 144 hpi with Stemphylium botryosum. (XLSX 157 kb)
DOI: 10.6084/m9.figshare.9808634.v1
title: Additional file 4: of Using a transcriptome sequencing approach to explore candidate resistance genes against stemphylium blight in the wild lentil species Lens ervoides

description: Table S3. Information of 1284 DEGs identified between Lens ervoides RILs LR-66-637 and LR-66-577 across 48, 96 and 144 hpi with Stemphylium botryosum. (XLSX 157 kb)
DOI: 10.6084/m9.figshare.9808640
title: Additional file 5: of Using a transcriptome sequencing approach to explore candidate resistance genes against stemphylium blight in the wild lentil species Lens ervoides

description: Table S4. GO enrichment analysis of DEGs between Lens ervoides RILs. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.9808640.v1
title: Additional file 5: of Using a transcriptome sequencing approach to explore candidate resistance genes against stemphylium blight in the wild lentil species Lens ervoides

description: Table S4. GO enrichment analysis of DEGs between Lens ervoides RILs. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.9808646
title: Additional file 6: of Using a transcriptome sequencing approach to explore candidate resistance genes against stemphylium blight in the wild lentil species Lens ervoides

description: Table S5. Top enriched GO terms of DEGs between Lens ervoides RILs. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.9808646.v1
title: Additional file 6: of Using a transcriptome sequencing approach to explore candidate resistance genes against stemphylium blight in the wild lentil species Lens ervoides

description: Table S5. Top enriched GO terms of DEGs between Lens ervoides RILs. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.9808652
title: Additional file 7: of Using a transcriptome sequencing approach to explore candidate resistance genes against stemphylium blight in the wild lentil species Lens ervoides

description: Table S6. DEGs identified by RNA-Seq that co-localized with two stemphylium blight resistance QTL intervals on the genetic map of Lens ervoides. Genes were further explored through bulk segeragtion analysis.Â (XLSX 10 kb)
DOI: 10.6084/m9.figshare.9808652.v1
title: Additional file 7: of Using a transcriptome sequencing approach to explore candidate resistance genes against stemphylium blight in the wild lentil species Lens ervoides

description: Table S6. DEGs identified by RNA-Seq that co-localized with two stemphylium blight resistance QTL intervals on the genetic map of Lens ervoides. Genes were further explored through bulk segeragtion analysis.Â (XLSX 10 kb)
DOI: 10.6084/m9.figshare.9808658
title: Additional file 8: of Using a transcriptome sequencing approach to explore candidate resistance genes against stemphylium blight in the wild lentil species Lens ervoides

description: Table S7. Sequences and amplification efficiencies for Stemphylium botryosum and Lens ervoides-specific primers. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.9808658.v1
title: Additional file 8: of Using a transcriptome sequencing approach to explore candidate resistance genes against stemphylium blight in the wild lentil species Lens ervoides

description: Table S7. Sequences and amplification efficiencies for Stemphylium botryosum and Lens ervoides-specific primers. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.9808691
title: Additional file 3: of ACLY facilitates colon cancer cell metastasis by CTNNB1

description: The impacts of ACLY deficiency on CTNNB1. (ZIP 4296 kb)
DOI: 10.6084/m9.figshare.9808691.v1
title: Additional file 3: of ACLY facilitates colon cancer cell metastasis by CTNNB1

description: The impacts of ACLY deficiency on CTNNB1. (ZIP 4296 kb)
DOI: 10.6084/m9.figshare.9808697
title: Additional file 4: of The differences of gonadal hormones and uterine transcriptome during shell calcification of hens laying hard or weak-shelled eggs

description: DEGs in hen uterus during different period of calcification. Excel file describing the DEGs that were annotated and non-annotated. (XLS 580 kb)
DOI: 10.6084/m9.figshare.9808697.v1
title: Additional file 4: of The differences of gonadal hormones and uterine transcriptome during shell calcification of hens laying hard or weak-shelled eggs

description: DEGs in hen uterus during different period of calcification. Excel file describing the DEGs that were annotated and non-annotated. (XLS 580 kb)
DOI: 10.6084/m9.figshare.9808715
title: MOESM1 of Comparative proteomic analysis provides new insights into the specialization of shoots and stolons in bermudagrass (Cynodon dactylon L.)

description: Additional file 1: Table S1. Information on the 376 differentially accumulated protein species. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.9808715.v1
title: MOESM1 of Comparative proteomic analysis provides new insights into the specialization of shoots and stolons in bermudagrass (Cynodon dactylon L.)

description: Additional file 1: Table S1. Information on the 376 differentially accumulated protein species. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.9808724
title: MOESM2 of Comparative proteomic analysis provides new insights into the specialization of shoots and stolons in bermudagrass (Cynodon dactylon L.)

description: Additional file 2: Table S2. Origin of the Cynodon dactylon cultivars and wild accessions. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.9808724.v1
title: MOESM2 of Comparative proteomic analysis provides new insights into the specialization of shoots and stolons in bermudagrass (Cynodon dactylon L.)

description: Additional file 2: Table S2. Origin of the Cynodon dactylon cultivars and wild accessions. (XLSX 9 kb)
DOI: 10.15131/shef.data.25245589
title: Clinical trial grant data extraction form with specification: final version 3.0

description: This dataset holds the data extracted from the systematic review of clinical trial grant applications and protocols
DOI: 10.15131/shef.data.25245589.v1
title: Clinical trial grant data extraction form with specification: final version 3.0

description: This dataset holds the data extracted from the systematic review of clinical trial grant applications and protocols
DOI: 10.6084/m9.figshare.9808733
title: MOESM3 of Comparative proteomic analysis provides new insights into the specialization of shoots and stolons in bermudagrass (Cynodon dactylon L.)

description: Additional file 3: Table S3. Primers used for RT-qPCR. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.9808733.v1
title: MOESM3 of Comparative proteomic analysis provides new insights into the specialization of shoots and stolons in bermudagrass (Cynodon dactylon L.)

description: Additional file 3: Table S3. Primers used for RT-qPCR. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.14524480
title: Additional file 1 of Genome-wide variant-based study of genetic effects with the largest neuroanatomic coverage

description: Additional file 1. The pearson correlation of SNPs, SNP pair or SNP sets and 3168 features.
DOI: 10.6084/m9.figshare.15048921
title: Immune implication of FAM83D gene in hepatocellular carcinoma

description: FAM83D has been demonstrated to contribute to tumorigenesis. However, its immune effects in hepatocellular carcinoma (HCC) have not been reported. This study aimed to identify the immune role of FAM83D in HCC. FAM83D was over-expressed in HCC and contributed to poor prognosis according to the results of data analysis based on The Cancer Genome Atlas (TCGA). Afterward, the levels of immune cells infiltration were found to be correlated with the expression level of FAM83D in HCC. Through TISIDB and cBioPortal network tools, a total of 82 FAM83D-associated genes were screened out, including 12 immunoinhibitors, 20 immunostimulators and 50 tightly co-expressed genes. TCGA cohort was divided into train set and test set on the basis of the proportion of 7:3. According to FAM83D-associated immunomodulators, a four gene predicted model was established using train set via the Cox regression analysis. Survival analysis demonstrated that the overall survival (OS) of high-risk HCC patients was poor compared with the patients in low-risk group. The reliability and predicted power of the risk-score model were identified by a receiver operating characteristic (ROC) curve. A risk-score based nomogram as well as a calibration curve, which were created could be used to anticipate patient’s 1-year, 3-year and 5-year survival probabilities. The test set was used to validate these results. Our findings showed that the FAM83D gene was related with HCC immunity. The immune marker chosen could be a promising biomarker for HCC prognosis.
DOI: 10.6084/m9.figshare.15048921.v1
title: Immune implication of FAM83D gene in hepatocellular carcinoma

description: FAM83D has been demonstrated to contribute to tumorigenesis. However, its immune effects in hepatocellular carcinoma (HCC) have not been reported. This study aimed to identify the immune role of FAM83D in HCC. FAM83D was over-expressed in HCC and contributed to poor prognosis according to the results of data analysis based on The Cancer Genome Atlas (TCGA). Afterward, the levels of immune cells infiltration were found to be correlated with the expression level of FAM83D in HCC. Through TISIDB and cBioPortal network tools, a total of 82 FAM83D-associated genes were screened out, including 12 immunoinhibitors, 20 immunostimulators and 50 tightly co-expressed genes. TCGA cohort was divided into train set and test set on the basis of the proportion of 7:3. According to FAM83D-associated immunomodulators, a four gene predicted model was established using train set via the Cox regression analysis. Survival analysis demonstrated that the overall survival (OS) of high-risk HCC patients was poor compared with the patients in low-risk group. The reliability and predicted power of the risk-score model were identified by a receiver operating characteristic (ROC) curve. A risk-score based nomogram as well as a calibration curve, which were created could be used to anticipate patient’s 1-year, 3-year and 5-year survival probabilities. The test set was used to validate these results. Our findings showed that the FAM83D gene was related with HCC immunity. The immune marker chosen could be a promising biomarker for HCC prognosis.
DOI: 10.5281/zenodo.10680717
title: Supplementary material - Genetic transformation with fluorescence gene reveals endophytic-plant interaction of the fungus Colletotrichum sp. isolated from Serjania laruotteana

description: Supplementary material: Genetic transformation with fluorescence gene reveals endophytic-plant interaction of the fungus Colletotrichum sp. isolated from Serjania laruotteana
DOI: 10.5281/zenodo.10680718
title: Supplementary material - Genetic transformation with fluorescence gene reveals endophytic-plant interaction of the fungus Colletotrichum sp. isolated from Serjania laruotteana

description: Supplementary material: Genetic transformation with fluorescence gene reveals endophytic-plant interaction of the fungus Colletotrichum sp. isolated from Serjania laruotteana
DOI: 10.6084/m9.figshare.15048924
title: Identification of the RP11-21C4.1/SVEP1 gene pair associated with FAT2 mutations as a potential biomarker in gastric cancer

description: Gastric cancer (GC) is one of the most common malignancies worldwide. Despite rapid advances in systemic therapy, GC remains the third leading cause of cancer-related deaths. We aimed to identify a novel prognostic signature associated with FAT2 mutations in GC. We analyzed the expression levels of FAT2-mutant and FAT2-wildtype GC samples obtained from The Cancer Genome Atlas (TCGA). The Kaplan–Meier survival curve showed that patients with FAT2 mutations showed better prognosis than those without the mutation. Sixteen long non-coding RNAs (lncRNAs) and 62 messenger RNAs (mRNAs) associated with FAT2 mutations were correlated with the prognosis of GC. We then constructed a 4-mRNA signature and a 5-lncRNA signature for GC. Finally, we identified the most relevant <i>RP11-21 C4.1/SVEP1</i> gene pair as a prognostic signature of GC that exhibited superior predictive performance in comparison with the 4-mRNA or 5-lncRNA signature by weighted gene correlation network analysis (WGCNA) and Cox proportional hazards regression analysis. In this study, we constructed a prognostic signature of GC by integrative genomics analysis, which also provided insights into the molecular mechanisms linked to FAT2 mutations in GC.
DOI: 10.6084/m9.figshare.9809018
title: Additional file 11: of Identification of heat-tolerance QTLs and high-temperature stress-responsive genes through conventional QTL mapping, QTL-seq and RNA-seq in tomato

description: Table S11. GO and KEGG analysis of 12 candidates genes selected by RNA-seq and qRT-PCR. (XLSX 11.0â kb) (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9809018.v1
title: Additional file 11: of Identification of heat-tolerance QTLs and high-temperature stress-responsive genes through conventional QTL mapping, QTL-seq and RNA-seq in tomato

description: Table S11. GO and KEGG analysis of 12 candidates genes selected by RNA-seq and qRT-PCR. (XLSX 11.0â kb) (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9809042
title: Additional file 17: of NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice

description: Table S1. All DEGs between TQ and nal8 in RNA-seq. The numbers are log2FC values. (XLSX 780 kb)
DOI: 10.6084/m9.figshare.9809042.v1
title: Additional file 17: of NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice

description: Table S1. All DEGs between TQ and nal8 in RNA-seq. The numbers are log2FC values. (XLSX 780 kb)
DOI: 10.6084/m9.figshare.9809048
title: Additional file 18: of NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice

description: Table S2. All proteins identified by proteomics analysis. (XLSX 680 kb)
DOI: 10.6084/m9.figshare.9809048.v1
title: Additional file 18: of NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice

description: Table S2. All proteins identified by proteomics analysis. (XLSX 680 kb)
DOI: 10.6084/m9.figshare.9809054
title: Additional file 19: of NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice

description: Table S3. Differentiated expressed proteins identified by proteomics analysis. (XLSX 271 kb)
DOI: 10.6084/m9.figshare.9809054.v1
title: Additional file 19: of NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice

description: Table S3. Differentiated expressed proteins identified by proteomics analysis. (XLSX 271 kb)