cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7625742
title: Raw Data for the article: High-Resolution Secretome Analysis of Chemical Hypoxia Treated Cells Identifies Putative Biomarkers of Chondrosarcoma

description: Chondrosarcoma is the second most common bone tumor, accounting for 20% of all cases. Little is known about the pathology and molecular mechanisms involved in the development and in the metastatic process of chondrosarcoma. As a consequence, there are no approved therapies for this tumor and surgical resection is the only treatment currently available. Moreover, there are no available biomarkers for this type of tumor, and chondrosarcoma classification relies on operator-dependent histopathological assessment. Reliable biomarkers of chondrosarcoma are urgently needed, as well as greater understanding of the molecular mechanisms of its development for translational purposes. Hypoxia is a central feature of chondrosarcoma progression. The hypoxic tumor microenvironment of chondrosarcoma triggers a number of cellular events, culminating in increased invasiveness and migratory capability. Herein, we analyzed the effects of chemically-induced hypoxia on the secretome of SW 1353, a human chondrosarcoma cell line, using high-resolution quantitative proteomics. We found that hypoxia induced unconventional protein secretion and the release of proteins associated to exosomes. Among these proteins, which may be used to monitor chondrosarcoma development, we validated the increased secretion in response to hypoxia of glyceraldehyde 3-phosphate dehydrogenase (GAPDH), a glycolytic enzyme well-known for its different functional roles in a wide range of tumors. In conclusion, by analyzing the changes induced by hypoxia in the secretome of chondrosarcoma cells, we identified molecular mechanisms that can play a role in chondrosarcoma progression and pinpointed proteins, including GAPDH, that may be developed as potential biomarkers for the diagnosis and therapeutic management of chondrosarcoma.
DOI: 10.5281/zenodo.7625741
title: Raw Data for the article: High-Resolution Secretome Analysis of Chemical Hypoxia Treated Cells Identifies Putative Biomarkers of Chondrosarcoma

description: Chondrosarcoma is the second most common bone tumor, accounting for 20% of all cases. Little is known about the pathology and molecular mechanisms involved in the development and in the metastatic process of chondrosarcoma. As a consequence, there are no approved therapies for this tumor and surgical resection is the only treatment currently available. Moreover, there are no available biomarkers for this type of tumor, and chondrosarcoma classification relies on operator-dependent histopathological assessment. Reliable biomarkers of chondrosarcoma are urgently needed, as well as greater understanding of the molecular mechanisms of its development for translational purposes. Hypoxia is a central feature of chondrosarcoma progression. The hypoxic tumor microenvironment of chondrosarcoma triggers a number of cellular events, culminating in increased invasiveness and migratory capability. Herein, we analyzed the effects of chemically-induced hypoxia on the secretome of SW 1353, a human chondrosarcoma cell line, using high-resolution quantitative proteomics. We found that hypoxia induced unconventional protein secretion and the release of proteins associated to exosomes. Among these proteins, which may be used to monitor chondrosarcoma development, we validated the increased secretion in response to hypoxia of glyceraldehyde 3-phosphate dehydrogenase (GAPDH), a glycolytic enzyme well-known for its different functional roles in a wide range of tumors. In conclusion, by analyzing the changes induced by hypoxia in the secretome of chondrosarcoma cells, we identified molecular mechanisms that can play a role in chondrosarcoma progression and pinpointed proteins, including GAPDH, that may be developed as potential biomarkers for the diagnosis and therapeutic management of chondrosarcoma.
DOI: 10.6084/m9.figshare.22060238.v1
title: Higher productivity in forests with mixed mycorrhizal strategies

description: Dataset, readme, and r script used for "High productivity in forest with mixed mycorrhizal strategies" (Luo et al. Nature Communications) <br> This dataset includes 74,563 forest inventory plots, spanning 35 ecoregions in the contiguous USA. Total aboveground biomass, tree species richness, stand age, elevation, slope, and physiographic class were extracted from the FIA database. Climatic information and soil pH were added to each plot. <br>
DOI: 10.34740/kaggle/dsv/4971217
title: Mahanagar Yatayat Dataset
DOI: 10.6084/m9.figshare.19620573
title: Problematic Use of Social Media and Social Anxiety among Low Academic Secondary Students

description: This study aims to find the level of problematic use of social media and social anxiety based on a number of variables (i.e. gender, age, economic status), and the relationship between these two variables among secondary students with low academic performance.
DOI: 10.6084/m9.figshare.19620573.v2
title: Problematic Use of Social Media and Social Anxiety among Low Academic Secondary Students

description: This study aims to find the level of problematic use of social media and social anxiety based on a number of variables (i.e. gender, age, economic status), and the relationship between these two variables among secondary students with low academic performance.
DOI: 10.6084/m9.figshare.19620573.v3
title: Problematic Use of Social Media and Social Anxiety among Low Academic Secondary Students

description: This study aims to find the level of problematic use of social media and social anxiety based on a number of variables (i.e. gender, age, economic status), and the relationship between these two variables among secondary students with low academic performance.
DOI: 10.6084/m9.figshare.21407943
title: Peritraumatic Stress Symptoms among COVID-19 Survivors in Iraq

description: the current study aims to explore peritraumatic stress symptoms among survivors of COVID-19 in Iraq. Moreover, group differences based on several variables and the associated factors with peritraumatic stress are also investigated.
DOI: 10.6084/m9.figshare.21407943.v1
title: Peritraumatic Stress Symptoms among COVID-19 Survivors in Iraq

description: the current study aims to explore peritraumatic stress symptoms among survivors of COVID-19 in Iraq. Moreover, group differences based on several variables and the associated factors with peritraumatic stress are also investigated.
DOI: 10.5281/zenodo.7625824
title: Adenosine concentration in patients with neurally-mediated syncope

description: <strong>Background.</strong> Either high or low values of adenosine blood level (ABL) can differentiate some forms of neurally-mediated syncope (NMS). A rapid method of measurement has recently been developed. The aim of the present study was: 1) to compare ABLs in an unselected population of consecutive patients referred for evaluation of suspected NMS syncope and in healthy controls; and 2) to assess the relative prevalence of low and high adenosine forms among an unselected syncope population <strong>Method.</strong> Whole blood was collected after finger puncture and its concentration was measured by liquid chromatography /mass spectrometry (LC-MS/MS). <strong>Results. </strong>Among 89 control subjects, the median ABL value was 0.54 µM (IQR 0.46-0.65). The lowest 5% and the upper 95% percentile were 0.40 and 0.80 µM respectively. Compared with healthy subjects, the 146 syncope patients showed on average a higher median ABL value (0.63 [IQR 0.45-0.73, p=0.04) and a larger distribution of values. Low ABL values below the 5<sup>th</sup> percentile were observed in 28 (19%) patients and in 5 controls, p=0.003 and high ABL values were observed in 26 (18%) patients and 5 controls, p=0.009. <strong>Conclusions. </strong>ABL is different in patients with suspected NMS than in healthy subjects. Patients with low and high adenosine values account for 19% and 18% of the general population. Thus, low and high ABL limits, as defined in this study, may help to define the purinergic profile of an unselected subjects with a clinical diagnosis of suspected NMS.
DOI: 10.5281/zenodo.7625823
title: Adenosine concentration in patients with neurally-mediated syncope

description: <strong>Background.</strong> Either high or low values of adenosine blood level (ABL) can differentiate some forms of neurally-mediated syncope (NMS). A rapid method of measurement has recently been developed. The aim of the present study was: 1) to compare ABLs in an unselected population of consecutive patients referred for evaluation of suspected NMS syncope and in healthy controls; and 2) to assess the relative prevalence of low and high adenosine forms among an unselected syncope population <strong>Method.</strong> Whole blood was collected after finger puncture and its concentration was measured by liquid chromatography /mass spectrometry (LC-MS/MS). <strong>Results. </strong>Among 89 control subjects, the median ABL value was 0.54 µM (IQR 0.46-0.65). The lowest 5% and the upper 95% percentile were 0.40 and 0.80 µM respectively. Compared with healthy subjects, the 146 syncope patients showed on average a higher median ABL value (0.63 [IQR 0.45-0.73, p=0.04) and a larger distribution of values. Low ABL values below the 5<sup>th</sup> percentile were observed in 28 (19%) patients and in 5 controls, p=0.003 and high ABL values were observed in 26 (18%) patients and 5 controls, p=0.009. <strong>Conclusions. </strong>ABL is different in patients with suspected NMS than in healthy subjects. Patients with low and high adenosine values account for 19% and 18% of the general population. Thus, low and high ABL limits, as defined in this study, may help to define the purinergic profile of an unselected subjects with a clinical diagnosis of suspected NMS.
DOI: 10.3886/e184221
title: Data and Code for: American Indian Casinos and Native American Self-Identification

description: This paper links Native American racial self-identification with the rise in tribal gaming across the United States. We find that state policy changes allowing tribes to open casinos are associated with an increase in the probability that individuals with American Indian ancestors will self-identify as Native American and a decrease in the probability that individuals with no American Indian ancestry will self-identify as Native American. Moreover, we find that the magnitudes of the impacts are increasing in the strength of American Indian ancestral ties. Similar results hold when causal identification comes from American Indian casino openings across states over time and suggestive evidence shows stronger impacts if casinos are likely to pay per capita dividend payments to their members. These results are consistent with a conceptual framework in which we tie racial identification to economic motivations as well as social stigma associated with affiliating with a racial group for those without documented ancestral ties. Our results underscore the importance of economic incentives and social factors underlying the individual choice of racial identity.
description: U.S. born in the in the 1990-2000 Census and 2001-2018 American Community Survey microdata.
description: All data was obtained from ipums.org
DOI: 10.3886/e184221v1
title: Data and Code for: American Indian Casinos and Native American Self-Identification

description: This paper links Native American racial self-identification with the rise in tribal gaming across the United States. We find that state policy changes allowing tribes to open casinos are associated with an increase in the probability that individuals with American Indian ancestors will self-identify as Native American and a decrease in the probability that individuals with no American Indian ancestry will self-identify as Native American. Moreover, we find that the magnitudes of the impacts are increasing in the strength of American Indian ancestral ties. Similar results hold when causal identification comes from American Indian casino openings across states over time and suggestive evidence shows stronger impacts if casinos are likely to pay per capita dividend payments to their members. These results are consistent with a conceptual framework in which we tie racial identification to economic motivations as well as social stigma associated with affiliating with a racial group for those without documented ancestral ties. Our results underscore the importance of economic incentives and social factors underlying the individual choice of racial identity.
description: U.S. born in the in the 1990-2000 Census and 2001-2018 American Community Survey microdata.
description: All data was obtained from ipums.org
DOI: 10.6084/m9.figshare.22060745
title: Appendix A

description: Appendix of the article Supply Chain Sustainability: A Model to Assess the <br> Maturity Level
DOI: 10.6084/m9.figshare.22060745.v1
title: Appendix A

description: Appendix of the article Supply Chain Sustainability: A Model to Assess the <br> Maturity Level
DOI: 10.15783/c7388c
title: CRAWDAD dataset upmc/content (v. 2006-11-17)

description: This data includes a number of traces of Bluetooth sightings 
by groups of users carrying small devices (iMotes) at locations around the city 
of Cambridge, UK.
description: Changelog: the initial version
DOI: 10.5281/zenodo.7625808
title: Hyperpolarized [15N]nitrate as a potential long lived hyperpolarized contrast agent for MRI

description: Primary data for DOI: 10.1016/j.jmr.2019.01.001 Title: Hyperpolarized [<sup>15</sup>N]nitrate as a potential long lived hyperpolarized contrast agent for MRI Authors: Ayelet Gamliel, Sivaranjan Uppala, Gal Sapir, Talia Harris, Atara Nardi-Schreiber, David Shaul, Jacob Sosna, J. Moshe Gomori, Rachel Katz-Brull Description: The primary datasets in this archive contain data presented in the above publication and consist of <sup>15</sup>N-NMR spectra in solutions. Please consult the Archive Guide.
description: Archive publication in progress
DOI: 10.5281/zenodo.3633788
title: Hyperpolarized [15N]nitrate as a potential long lived hyperpolarized contrast agent for MRI

description: Primary data for DOI: 10.1016/j.jmr.2019.01.001 Title: Hyperpolarized [<sup>15</sup>N]nitrate as a potential long lived hyperpolarized contrast agent for MRI Authors: Ayelet Gamliel, Sivaranjan Uppala, Gal Sapir, Talia Harris, Atara Nardi-Schreiber, David Shaul, Jacob Sosna, J. Moshe Gomori, Rachel Katz-Brull Description: The primary datasets in this archive contain data presented in the above publication and consist of <sup>15</sup>N-NMR spectra in solutions. Please consult the Archive Guide.
description: Archive publication in progress
DOI: 10.15783/c7730v
title: CRAWDAD dataset upb/mobility2011 (v. 2012-06-18)

description: This is the data from an Android Bluetooth tracing experiment performed for a
period of 35 days in an academic environment (University Politehnica of
Bucharest) between November 18 and December 22 2011.
description: Changelog: the initial version
DOI: 10.15783/c7bs3t
title: CRAWDAD dataset unimi/pmtr (v. 2008-12-01)

description: This dataset contains mobility traces from 44 mobile devices at University of 
Milano. The data was collected in November 2008.
description: Changelog: the initial version
DOI: 10.15783/c7r30h
title: CRAWDAD dataset umich/rss (v. 2011-08-10)

description: This is a dataset of RSS measurements collected by Mica2 sensor nodes deployed 
inside and outside a lab room, with anomaly patterns occurring when students
walked into and out of the lab. A web camera recorded the activity that could 
be matched with detected anomalies.
description: Changelog: the initial version
DOI: 10.15783/c70k5d
title: CRAWDAD dataset umass/long_distance (v. 2007-06-01)

description: Our experiments consisted of 802.11g wireless network throughput
measurements in various overlapping ad-hoc node configurations
in order to better understand interference when using yagi
antennas to extend the range of the wireless transmission.
description: Changelog: the initial version
DOI: 10.25573/data.22060751
title: Database

description: See https://github.com/silviajusti/publications/edit/2023_update/SCO_pipeline.md
DOI: 10.25573/data.22060751.v1
title: Database

description: See https://github.com/silviajusti/publications/edit/2023_update/SCO_pipeline.md
DOI: 10.5281/zenodo.7625680
title: mopalia_swanii_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.7625679
title: mopalia_swanii_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.15783/c78305
title: CRAWDAD dataset umass/diesel (v. 2007-12-02)

description: This dataset includes the real mobility and real transfers of the bus-based 
DTN (Disruption-tolerant-network) testbed, called UMassDieselNet, 
operating from the UMass Amherst campus and the surrounding county.
description: Changelog: The following traces have been added: 
transfer/spring2006, transfer/spring2007, transfer/ap_connectivity, and 
throwbox/summer2006.
DOI: 10.6084/m9.figshare.22060778
title: Appendix A. Maturity levels for each area of the Maturity Model

description: Appendix of the article Supply Chain Sustainability: A Model to Assess the <br> Maturity Level
DOI: 10.5281/zenodo.7424587
title: MD Simulation data for a pure DOPC bilayer (1000 mM NaCl) with AMOEBA force field + OpenMM

description: MD simulation data for the DOPC bilayer + 1000 mM NaCl with the AMOEBA-based force field developed by Li (https://doi.org/10.1080/00268976.2018.1436201). The simulation contains 72 DOPC lipids, 35 NaCl ions, and 2880 water molecules. The trajectory is 201,61 ns long (20161 frames with 10 ps saving frequency).
DOI: 10.5281/zenodo.7604785
title: MD Simulation data for a pure DOPC bilayer (1000 mM NaCl) with AMOEBA force field + OpenMM

description: MD simulation data for the DOPC bilayer + 1000 mM NaCl with the AMOEBA-based force field developed by Li (https://doi.org/10.1080/00268976.2018.1436201). The simulation contains 72 DOPC lipids, 35 NaCl ions, and 2880 water molecules. The trajectory is 201,61 ns long (20161 frames with 10 ps saving frequency). <strong>It has been discovered that (https://github.com/NMRLipids/Databank/issues/2#issuecomment-1357871243) the previously uploaded trajectory did not have the correct timestamp: the timestep between two consecutive simulation frames was not correctly embedded into the trajectory information. Therefore, with the latest version we are uploading the "unwrapped_all_fixed_dt.xtc" which has the correct timestamp. The frame saving frequency in this trajectory is 10 ps. </strong> <strong>This new update should not invalidate any previous calculations that did not explicitly read the timestamp information from the trajectory.</strong> <strong>This simulation consists of 12 sub-trajectories, each of which starts from the last frame of the previous one. These trajectories (originally in dcd format) were concatenated and saved in xtc format with MDAnalysis.</strong>
DOI: 10.5281/zenodo.7424586
title: MD Simulation data for a pure DOPC bilayer (1000 mM NaCl) with AMOEBA force field + OpenMM

description: MD simulation data for the DOPC bilayer + 1000 mM NaCl with the AMOEBA-based force field developed by Li (https://doi.org/10.1080/00268976.2018.1436201). The simulation contains 72 DOPC lipids, 35 NaCl ions, and 2880 water molecules. The trajectory is 201,61 ns long (20161 frames with 10 ps saving frequency). <strong>It has been discovered that (https://github.com/NMRLipids/Databank/issues/2#issuecomment-1357871243) the previously uploaded trajectory did not have the correct timestamp: the timestep between two consecutive simulation frames was not correctly embedded into the trajectory information. Therefore, with the latest version we are uploading the "unwrapped_all_fixed_dt.xtc" which has the correct timestamp. The frame saving frequency in this trajectory is 10 ps. </strong> <strong>This new update should not invalidate any previous calculations that did not explicitly read the timestamp information from the trajectory.</strong> <strong>This simulation consists of 12 sub-trajectories, each of which starts from the last frame of the previous one. These trajectories (originally in dcd format) were concatenated and saved in xtc format with MDAnalysis.</strong>
DOI: 10.15783/c7hg6d
title: CRAWDAD dataset uiuc/uim (v. 2012-01-24)

description: This is the dataset of MACs of Bluetooth and Wi-Fi access points collected by 
the University of Illinois Movement (UIM) framework using Google Android phones.
description: Changelog: the initial version
DOI: 10.12754/data-2023-0001
title: Datasets for the publication “Multidecadal climate variability dominated past trends in the water balance of the Baltic Sea catchment area” by H. E. Markus Meier, Leonie Barghorn, Florian Börgel, Matthias Gröger, Lev Naumov, and Hagen Radtke“

description: The results of the publication “Multidecadal climate variability dominated past trends in the water balance of the Baltic Sea catchment area” by H. E. Markus Meier, Leonie Barghorn, Florian Börgel, Matthias Gröger, Lev Naumov, and Hagen Radtke” are based on the here presented model and observational datasets. Baltic Sea salinity is characterised by a pronounced multidecadal variability, with a period of about 30 years. The authors propose that these fluctuations are caused by the combination of the Atlantic Multidecadal Variability and the North Atlantic Oscillation. A positive feedback mechanism amplifies the salinity variations. The datasets are sorted according to the figures showing the analysis results and summarised in the README.pdf file.
DOI: 10.15783/c7s015
title: CRAWDAD dataset ucsd/cse (v. 2008-08-25)

description: To characterize the sources of delay in 802.11 production network, 
we collected comprehensive traces of wireless activity in the UCSD 
Computer Science building.
description: Changelog: the initial version
DOI: 10.5517/ccdc.csd.cc218kws
title: CCDC 1885075: Experimental Crystal Structure Determination

description: Related Article: Xi Chen|2022|CSD Communication|||
description: Related Article: Xi Chen, Hongliu Zhang, Miguel A. Maria-Solano, Weidong Liu, Juan Li, Jinhui Feng, Xiangtao Liu, Sílvia Osuna, Rey-Ting Guo, Qiaqing Wu, Dunming Zhu, Yanhe Ma |2019|Nat. Catal.|2|931|doi:10.1038/s41929-019-0347-y
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc23s1fd
title: CCDC 1959523: Experimental Crystal Structure Determination

description: Related Article: Aleksandra Bjelosevic,  Jennette Sakoff,  Jayne Gilbert,  Yingjie Zhang,  Christopher Gordon,  Janice R. Aldrich-Wright|2020|Aust.J.Chem.|73|956|doi:10.1071/CH19528
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc23s1gf
title: CCDC 1959524: Experimental Crystal Structure Determination

description: Related Article: Aleksandra Bjelosevic,  Jennette Sakoff,  Jayne Gilbert,  Yingjie Zhang,  Christopher Gordon,  Janice R. Aldrich-Wright|2020|Aust.J.Chem.|73|956|doi:10.1071/CH19528
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.