cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0997152.10fu
title: SH0997152.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.at2hjn
title: Occurrence Download

description: A dataset containing 44376 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "Country is one of (United States of America, United States Minor Outlying Islands, American Samoa, Micronesia (Federated States of), Guam, Marshall Islands, Northern Mariana Islands, Puerto Rico, Palau, Virgin Islands (U.S.))",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Phragmites australis (Cav.) Trin. ex Steud.)"
 ]
}

 The dataset includes 44376 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0109838-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/5942140
title: sharkdetector
DOI: 10.6085/aa/ialexx_xxxix03xmsr01_20201112.50.1
title: MARINe/PISCO: Intertidal: site temperature data: Alegria, California (IALEXX)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Alegria, California by MARINe/PISCO. Measurements were collected using HOBO Tidbit MX Water Temperature 400ft Data Logger (Onset Computer Corp. MX2203) beginning 2020-11-14. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10 or 15 minute intervals.
DOI: 10.6085/aa/ialexx_xxxix03xmsr01_20201112.40.1
title: (:unkn)
DOI: 10.6085/aa/ialexx_xxxix03xmsr01_20210623.50.1
title: MARINe/PISCO: Intertidal: site temperature data: Alegria, California (IALEXX)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Alegria, California by MARINe/PISCO. Measurements were collected using HOBO Tidbit MX Water Temperature 400ft Data Logger (Onset Computer Corp. MX2203) beginning 2021-07-08. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10 or 15 minute intervals.
DOI: 10.6085/aa/ialexx_xxxix03xmsr01_20210623.40.1
title: (:unkn)
DOI: 10.6085/aa/iarhxx_xxxix03xmsr01_20201016.50.1
title: MARINe/PISCO: Intertidal: site temperature data: Arroyo Hondo, California (IARHXX)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Arroyo Hondo, California by MARINe/PISCO. Measurements were collected using HOBO Tidbit MX Water Temperature 400ft Data Logger (Onset Computer Corp. MX2203) beginning 2020-10-20. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10 or 15 minute intervals.
DOI: 10.6085/aa/iarhxx_xxxix03xmsr01_20201016.40.1
title: (:unkn)
DOI: 10.34740/kaggle/dsv/3079587
title: Diacritic Restoration in Yoruba Language
DOI: 10.6085/aa/iarhxx_xxxix03xmsr01_20211108.50.1
title: MARINe/PISCO: Intertidal: site temperature data: Arroyo Hondo, California (IARHXX)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Arroyo Hondo, California by MARINe/PISCO. Measurements were collected using HOBO Tidbit MX Water Temperature 400ft Data Logger (Onset Computer Corp. MX2203) beginning 2021-11-12. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10 or 15 minute intervals.
DOI: 10.6085/aa/iarhxx_xxxix03xmsr01_20211108.40.1
title: (:unkn)
DOI: 10.6085/aa/icopxx_xxxix03xmsr01_20201020.50.1
title: MARINe/PISCO: Intertidal: site temperature data: Coal Oil Point, California (ICOPXX)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Coal Oil Point, California by MARINe/PISCO. Measurements were collected using HOBO Tidbit MX Water Temperature 400ft Data Logger (Onset Computer Corp. MX2203) beginning 2020-10-21. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10 or 15 minute intervals.
DOI: 10.6085/aa/icopxx_xxxix03xmsr01_20201020.40.1
title: (:unkn)
DOI: 10.6085/aa/icopxx_xxxix03xmsr01_20211109.50.1
title: MARINe/PISCO: Intertidal: site temperature data: Coal Oil Point, California (ICOPXX)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Coal Oil Point, California by MARINe/PISCO. Measurements were collected using HOBO Tidbit MX Water Temperature 400ft Data Logger (Onset Computer Corp. MX2203) beginning 2021-11-11. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10 or 15 minute intervals.
DOI: 10.6085/aa/icopxx_xxxix03xmsr01_20211109.40.1
title: (:unkn)
DOI: 10.6085/aa/icrpxx_xxxix03xmsr01_20211206.50.1
title: MARINe/PISCO: Intertidal: site temperature data: Carpinteria, California (ICRPXX)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Carpinteria, California by MARINe/PISCO. Measurements were collected using HOBO Tidbit MX Water Temperature 400ft Data Logger (Onset Computer Corp. MX2203) beginning 2021-12-17. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10 or 15 minute intervals.
DOI: 10.6085/aa/icrpxx_xxxix03xmsr01_20211206.40.1
title: (:unkn)
DOI: 10.6085/aa/imusxx_xxxix03xmsr01_20201117.50.1
title: MARINe/PISCO: Intertidal: site temperature data: Mussel Shoals, California (IMUSXX)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Mussel Shoals, California by MARINe/PISCO. Measurements were collected using HOBO Tidbit MX Water Temperature 400ft Data Logger (Onset Computer Corp. MX2203) beginning 2020-11-20. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10 or 15 minute intervals.
DOI: 10.6085/aa/imusxx_xxxix03xmsr01_20201117.40.1
title: (:unkn)
DOI: 10.6085/aa/imusxx_xxxix03xmsr01_20211207.50.1
title: MARINe/PISCO: Intertidal: site temperature data: Mussel Shoals, California (IMUSXX)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Mussel Shoals, California by MARINe/PISCO. Measurements were collected using HOBO Tidbit MX Water Temperature 400ft Data Logger (Onset Computer Corp. MX2203) beginning 2021-12-10. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10 or 15 minute intervals.
DOI: 10.6085/aa/imusxx_xxxix03xmsr01_20211207.40.1
title: (:unkn)
DOI: 10.6084/m9.figshare.23535423
title: Supplementary Tables for "Association of polygenic score with tumor molecular subtypes in papillary thyroid carcinoma"

description: Thyroid cancer molecular subtypes and polygenic score
DOI: 10.5281/zenodo.8048486
title: anas_bernieri_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8048485
title: anas_bernieri_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8048513
title: anablepsoides_cearensis_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8048512
title: anablepsoides_cearensis_zanfona_1.fasta.gz

description: .
DOI: 10.6084/m9.figshare.21440952
title: Atollgen pipeline outputs

description: This dataset contains the AtollGen pipeline results, including : - README.md : an extended description of the figshare dataset - annotation_results : a collection of all the analysed GIs with their annotations as json files. - base / base_with_overlaps : summarises all output information in 1 row per island in tabular form (as a collection of csv files in zip archive) - grouped / grouped_with_overlaps : aggregates base information in tabular form (as a collection of csv files in zip archive). Aggregation groups include among others : GI classification (by_label), host genome taxonomy (by_phylum), GI genomic environment (integ_site) - all_islands_with_overlaps_data : all GIs basic information including overlap information in 1 row per island in tabular form
DOI: 10.6084/m9.figshare.21440952.v1
title: Atollgen pipeline outputs

description: This dataset contains the AtollGen pipeline results, including : - README.md : an extended description of the figshare dataset - annotation_results : a collection of all the analysed GIs with their annotations as json files. - base / base_with_overlaps : summarises all output information in 1 row per island in tabular form (as a collection of csv files in tar archive) - grouped / grouped_with_overlaps : aggregates base information in tabular form (as a collection of csv files in tar archive and as xlsx workbooks). Aggregation groups include among others : GI classification (by_label), host genome taxonomy (by_phylum), GI genomic environment (integ_site) - all_islands_with_overlaps_data : all GIs basic information including overlap information in 1 row per island in tabular form
DOI: 10.22002/kzz6v-r4r86
title: Caulobacter crescentus ftsE del

description: Caulobacter crescentus, ftsE, FtsZ, Long cell, PYE
description: <strong>Tilt Series Date:</strong> 2017-01-17</p>
<strong>Data Taken By:</strong> Qing Yao</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 1.0°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -12.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSFTOMO</p>
<strong>Collaborators and Roles:</strong> Goley ED at Johns Hopkins University School of Medicine</p>
description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/qya2017-01-17-1</p>montage100001.mrc,  Tilt Series (Pixel Size 0.48 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/qya2017-01-17-1/rawdata/montage100001.mrc"
        > <i class="download icon"></i> Download </a></p>

        montage100001.rec,  Reconstruction (Pixel Size 1.92 nm), 622.3 MB  
        
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/qya2017-01-17-1/3dimage_81205/montage100001.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/zsn7m-w0k80
title: T5_504Cys_Aumalemaide_5nm

description: This is a sample in which N terminus residue 504 has been mutated to Cys residue. Mini cells have been isolated by high speed centrifugation and cells are Au malemaide labelled. No fiducials added.
description: <strong>Tilt Series Date:</strong> 2017-02-17</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> EC93 stick, UPEC536</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 125.0 eV/Å²,  defocus: -10.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> autoPatch</p>
<strong>Collaborators and Roles:</strong> Zach Ruhe and Chris Hayes</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Freezing in vitrobot. Humidifier was not working. I wouldn't really trust the conditions.See pages 104-105</p>
<strong>Sample Preparation:</strong> Sample prepared by Taylor Steven</p>
description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2017-02-17-14</p>sq90006.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.7 GB  
        
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2017-02-17-14/rawdata/sq90006.mrc"
        > <i class="download icon"></i> Download </a></p>

        sq90006.rec,  Reconstruction (Pixel Size 1.56 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2017-02-17-14/3dimage_82464/sq90006.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.6084/m9.figshare.14955708
title: Data and code for: What’s in a book exchange: Examining contents in relation to steward intentions, geography, and public library collections

description: Data and code for research on Little Free Libraries (LFL) in Seattle. These files are archived from a GitHub repository linked in the references field. <br> The peer reviewed paper is here: <strong>https://doi.org/10.1177/0961000622112433</strong> <br> We interviewed stewards from a random sample of LFLs in Seattle, WA and documented the contents of each LFL. The files here support a publication examining what is found in LFLs and how stewards manage their LFLs.<br> <strong>Abstract:</strong> In the last decade, book exchanges, most prominently those registered with the Little Free Library® network, have attracted the interest of researchers and media alike. Very little is known about what types of books are available in these book exchanges and how their collections compare to those in public libraries. To address this gap in knowledge, we selected a random sample of 42 Little Free Libraries across eight Seattle neighborhoods to inventory their contents. We interviewed the stewards about their stocking and weeding practices. Our inventory shows that most of the books available in Little Free Libraries are children’s, mystery, suspense, self-help/health, and scifi/fantasy books published in the last 10–30 years. Neighborhoods in our sample ranged in socioeconomic and racial diversity measures, but there were no significant differences in LFL contents related to those measures. We also compared our inventory to the collections of nearby public library branches and found Little Free Libraries offer a complementary rather than competitive selection scenario: books in LFLs are generally older, with a lesser proportion of children’s books and higher proportion of fiction books.
DOI: 10.17632/3jxmmfzhyp.1
title: Mindfulness and Economic Preferences

description: Survey data collected in the spring of 2022 on mindfulness measures and meditation practices of 650 U.S. adults. Data also collected on demographics, risk and time preferences, financial literacy, impulsivity, trust, and personality traits.
DOI: 10.6084/m9.figshare.14955708.v1
title: Data and code for: What’s in a book exchange: Examining contents in relation to steward intentions, geography, and public library collections

description: Data and code for research on Little Free Libraries (LFL) in Seattle. These files are archived from a GitHub repository linked in the references field. <br> The peer reviewed paper is here: <strong>https://doi.org/10.1177/0961000622112433</strong> <br> We interviewed stewards from a random sample of LFLs in Seattle, WA and documented the contents of each LFL. The files here support a publication examining what is found in LFLs and how stewards manage their LFLs.<br> <strong>Abstract:</strong> In the last decade, book exchanges, most prominently those registered with the Little Free Library® network, have attracted the interest of researchers and media alike. Very little is known about what types of books are available in these book exchanges and how their collections compare to those in public libraries. To address this gap in knowledge, we selected a random sample of 42 Little Free Libraries across eight Seattle neighborhoods to inventory their contents. We interviewed the stewards about their stocking and weeding practices. Our inventory shows that most of the books available in Little Free Libraries are children’s, mystery, suspense, self-help/health, and scifi/fantasy books published in the last 10–30 years. Neighborhoods in our sample ranged in socioeconomic and racial diversity measures, but there were no significant differences in LFL contents related to those measures. We also compared our inventory to the collections of nearby public library branches and found Little Free Libraries offer a complementary rather than competitive selection scenario: books in LFLs are generally older, with a lesser proportion of children’s books and higher proportion of fiction books.
DOI: 10.22002/1ptv5-w7v73
title: Xanthomonas (-B7) vs Caulobacter

description: Xanthomonas ΔVirB7 Vs Caulobacter competition
description: <strong>Tilt Series Date:</strong> 2017-03-17</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Xanthomonas citri</p>
<strong>Strain:</strong> pv citri 306</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Chuck Farah lab made the strains, data collected by Debnath Ghosal.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> 4 µL mixture of Xac (-VirB7) and Caulobacter cells were pipetted on top of Au-Finder grids. These grids were glow discharged in advance and kept on top of Agar pads. Carbon side up. These were then kept at the BSL-II hood and left for about 10 min before freezing.</p>
<strong>Sample Preparation:</strong> Freezing conditions: Blot force 6, wait time=0, drain time =1 sec, blot time= 9 sec</p>
description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-03-17-7</p>DeltaVirB7_Cc_20170316na20011.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.5 GB  
        
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-03-17-7/rawdata/DeltaVirB7_Cc_20170316na20011.mrc"
        > <i class="download icon"></i> Download </a></p>

        DeltaVirB7_Cc_20170316na20011.rec,  Reconstruction (Pixel Size 1.56 nm), 889.0 MB  
        
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-03-17-7/3dimage_83229/DeltaVirB7_Cc_20170316na20011.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/e9vy4-vnd62
title: P. aeruginosa T6SS minicell

description: Pseudomonas JT1599Grid box YWC247
description: <strong>Tilt Series Date:</strong> 2017-04-14</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain from Jonida Toska at John Mekalanos lab</p>
description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-04-14-47</p>20170414_YWC247_10056.mrc,  Tilt Series (Pixel Size 0.39 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-04-14-47/rawdata/20170414_YWC247_10056.mrc"
        > <i class="download icon"></i> Download </a></p>

        20170414_YWC247_10056_part81_4.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-04-14-47/3dimage_83736/20170414_YWC247_10056_part81_4.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.34740/kaggle/dsv/5826841
title: Coronary Artery Diseaes DataSet Normal || Abnormal
DOI: 10.17632/sdc8gs2zc2.1
title: ChickFrogCB1RPaper

description: Cannabinoid Receptor Type 1 regulates sequential stages of migration and morphogenesis of neural crest and derivatives in chicken and frog embryos
DOI: 10.17632/sdc8gs2zc2.2
title: ChickFrogCB1RPaper

description: Cannabinoid Receptor Type 1 regulates sequential stages of migration and morphogenesis of neural crest and derivatives in chicken and frog embryos
DOI: 10.25739/v648-e929
title: Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_Mo17_CAU_1.0_May_2023_v2.r1

description: This dataset generated by GOMAP is a high-coverage and reproducible functional annotation set based on Gene Ontology (GO) term assignments that covers all gene models in Zea mays Mo17 genome annotation with a median of 10 annotations per gene model with 99.99% coverage. This dataset is an updated version of the previously generated dataset https://doi.org/10.25739/m634-cn58 . It was created in May of 2023.
DOI: 10.25739/ge76-f042
title: Carolyn_Lawrence_Dill_GOMAP_Maize_MaizeGDB_Mo17_CAU_1.0_May_2023_v2.r1

description: This dataset generated by GOMAP is a high-coverage and reproducible functional annotation set based on Gene Ontology (GO) term assignments that covers all gene models in Zea mays Mo17 genome annotation with a median of 10 annotations per gene model with 99.99% coverage. This dataset is an updated version of the previously generated dataset https://doi.org/10.25739/m634-cn58 . It was created in May of 2023.