cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.4cnsb5
title: Occurrence Download

description: A dataset containing 306 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Rhopalodontus strandi Lohse, 1969",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 306 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104049-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13208408
title: Data for Environmental and ecological drivers of eye size variation in a freshwater predator: a trade-off between foraging and predation risk

description: CodeZenodo contains code for the final analysis included in the publication along with the code to generate figures. 

Envt_vars contains information about the lakes

Fish_SI contains stable isotopes, eye size, and body length for each fish
DOI: 10.15468/dl.bdvxty
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Schendyla armata Brölemann, 1901",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 56 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104050-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8119069
title: Data for Environmental and ecological drivers of eye size variation in a freshwater predator: a trade-off between foraging and predation risk

description: CodeZenodo contains code for the final analysis included in the publication along with the code to generate figures. 

Envt_vars contains information about the lakes

Fish_SI contains stable isotopes, eye size, and body length for each fish
DOI: 10.15468/dl.r9j8f4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Mughiphantes carnicus (van Helsdingen, 1982)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104051-240626123714530/datasets/export for details.
DOI: 10.5281/zenodo.13380129
title: Metabolomics data associated with "Glial swip-10 controls systemic mitochondrial function, oxidative stress, and neuronal viability via copper ion homeostasis"

description: Raw feature tables used for metabolomic analysis of the Caenorhabditis elegans mutant swip-10. The data were generated using liquid chromatography coupled high-resolution mass spectrometry. Two different columns were used: HILIC (+ ESI) and C18 (-ESI), coupled to a Thermo Q-Exactive Orbitrap mass spectrometer. The feature tables were generated using open-source peak peaking and alignment R packages: apLCMS and xMAanalyzer. See more details in the associated manuscript.
DOI: 10.5281/zenodo.13380130
title: Metabolomics data associated with "Glial swip-10 controls systemic mitochondrial function, oxidative stress, and neuronal viability via copper ion homeostasis"

description: Raw feature tables used for metabolomic analysis of the Caenorhabditis elegans mutant swip-10. The data were generated using liquid chromatography coupled high-resolution mass spectrometry. Two different columns were used: HILIC (+ ESI) and C18 (-ESI), coupled to a Thermo Q-Exactive Orbitrap mass spectrometer. The feature tables were generated using open-source peak peaking and alignment R packages: apLCMS and xMAanalyzer. See more details in the associated manuscript.
DOI: 10.5281/zenodo.13375350
title: Microbiota Study Crohn's Disease AG Chang

description: We have investigated a Crohn’s disease (CD) cohort by our multi-parameter microbiota flow cytometry approach to characterise the microbiota on single-cell level for attributes of the disease. The microbiota is isolated from stool samples and stained according to the published protocol for (a) host immunoglobulins IgA1, IgA2, IgM, IgG and (b) agglutinin binding to mannose, galactose or N-Acetyl-glucosamine surface sugar moieties. For all samples we also determined the microbiome composition by 16S rRNA (V3-V4) sequencing on the illumina MiSeq platform. We provide the raw .fcs and FASTQ files of 64 CD patients distributed into two cohorts (55) individuals in cohort 1, 19 individuals in cohort 2). Cohort 2 has two samples for two timepoints.

For comparison we additionally analysed 55 healthy donors.

All .fcs files were generated on BD Influx®.

 

The metadata is collected in the provided meta.csv.

The staining parameters are summarized in provided panel.csv.
DOI: 10.5281/zenodo.13375351
title: Microbiota Study Crohn's Disease AG Chang

description: We have investigated a Crohn’s disease (CD) cohort by our multi-parameter microbiota flow cytometry approach to characterise the microbiota on single-cell level for attributes of the disease. The microbiota is isolated from stool samples and stained according to the published protocol for (a) host immunoglobulins IgA1, IgA2, IgM, IgG and (b) agglutinin binding to mannose, galactose or N-Acetyl-glucosamine surface sugar moieties. For all samples we also determined the microbiome composition by 16S rRNA (V3-V4) sequencing on the illumina MiSeq platform. We provide the raw .fcs and FASTQ files of 64 CD patients distributed into two cohorts (55) individuals in cohort 1, 19 individuals in cohort 2). Cohort 2 has two samples for two timepoints.

For comparison we additionally analysed 55 healthy donors.

All .fcs files were generated on BD Influx®.

 

The metadata is collected in the provided meta.csv.

The staining parameters are summarized in provided panel.csv.
DOI: 10.5281/zenodo.12732929
title: Serial synchrotron crystallography dataset and 3D-ED dataset - HEWL crystals obtained by instant crystallization with TbXo4

description: Data sets related to the publication "Nucleating Agent Crystallophore Induces Instant Protein Crystallization" by Sauter et al.

3D-Electron Diffraction data: The raw data obtained on the protein Hen Egg-White Lysozyme is contained in the file RAW-Data_3D-ED_deposition.tar.bz2.

Results of first rounds of model refinement are contained in 3D-ED-affi_4-5sets files

Synchrotron Serial Crystallography data: The raw SSX data obtained on the protein Hen Egg-White Lysozyme can be accessed through https://doi.org/10.15151/ESRF-DC-1823716276.

Results of first rounds of model refinement are contained in SSX-Xo4-supernatent files
DOI: 10.5281/zenodo.12732930
title: Serial synchrotron crystallography dataset and 3D-ED dataset - HEWL crystals obtained by instant crystallization with TbXo4

description: Data sets related to the publication "Nucleating Agent Crystallophore Induces Instant Protein Crystallization" by Sauter et al.

3D-Electron Diffraction data: The raw data obtained on the protein Hen Egg-White Lysozyme is contained in the file RAW-Data_3D-ED_deposition.tar.bz2.

Results of first rounds of model refinement are contained in 3D-ED-affi_4-5sets files

Synchrotron Serial Crystallography data: The raw SSX data obtained on the protein Hen Egg-White Lysozyme can be accessed through https://doi.org/10.15151/ESRF-DC-1823716276.

Results of first rounds of model refinement are contained in SSX-Xo4-supernatent files
DOI: 10.5281/zenodo.13379120
title: EWAS associations between DNAm and general cognitive score, perceptive performance score, and verbal score

description: Evaluating the association between placenta DNA methylation and cognitive functions in the offspring 

Placenta plays a crucial role protecting the foetus from environmental harm and supports the development of its brain. In fact, compromised placental function could predispose an individual to neurodevelopmental disorders. Placental epigenetic modifications, including DNA methylation, could be considered a proxy of placental function and thus plausible mediators of the association between intrauterine environmental exposures and genetics, and childhood and adult mental health. Although neurodevelopmental disorders such as autism spectrum disorder have been investigated in relation to placenta DNA methylation, no studies have addressed the association between placenta DNA methylation and child’s cognitive functions. Thus, our goal here was to investigate whether placental DNA methylation profile measured using the Illumina EPIC array is associated with three different cognitive domains (namely verbal score, perceptive performance score, and general cognitive score) assessed by the McCarthy Scales of Children’s functions in childhood at age 4. To this end, we conducted epigenome-wide association analyses including data from 255 mother-child pairs within the INMA project and performed a follow-up functional analysis to help the interpretation of the findings. After multiple-testing correction, we found that methylation at 4 CpGs (cg1548200, cg02986379, cg00866476 and cg14113931) was significantly associated with the general cognitive score, and 2 distinct differentially methylated regions (DMRs) (including 27 CpGs) were significantly associated with each cognitive dimension. Interestingly, the genes annotated to these CpGs, such as DAB2, CEP76, PSMG2, or MECOM, are involved in placenta, foetal, and brain development. Moreover, functional enrichment analyses of suggestive CpGs (p<1x10-4) revealed gene-sets involved in placenta development, foetus formation and brain growth. These findings suggest that placental DNAm could be a mechanism contributing to the alteration of important pathways in the placenta that have a consequence on the offspring’s brain development and cognitive function.
DOI: 10.5281/zenodo.13379121
title: EWAS associations between DNAm and general cognitive score, perceptive performance score, and verbal score

description: Evaluating the association between placenta DNA methylation and cognitive functions in the offspring 

Placenta plays a crucial role protecting the foetus from environmental harm and supports the development of its brain. In fact, compromised placental function could predispose an individual to neurodevelopmental disorders. Placental epigenetic modifications, including DNA methylation, could be considered a proxy of placental function and thus plausible mediators of the association between intrauterine environmental exposures and genetics, and childhood and adult mental health. Although neurodevelopmental disorders such as autism spectrum disorder have been investigated in relation to placenta DNA methylation, no studies have addressed the association between placenta DNA methylation and child’s cognitive functions. Thus, our goal here was to investigate whether placental DNA methylation profile measured using the Illumina EPIC array is associated with three different cognitive domains (namely verbal score, perceptive performance score, and general cognitive score) assessed by the McCarthy Scales of Children’s functions in childhood at age 4. To this end, we conducted epigenome-wide association analyses including data from 255 mother-child pairs within the INMA project and performed a follow-up functional analysis to help the interpretation of the findings. After multiple-testing correction, we found that methylation at 4 CpGs (cg1548200, cg02986379, cg00866476 and cg14113931) was significantly associated with the general cognitive score, and 2 distinct differentially methylated regions (DMRs) (including 27 CpGs) were significantly associated with each cognitive dimension. Interestingly, the genes annotated to these CpGs, such as DAB2, CEP76, PSMG2, or MECOM, are involved in placenta, foetal, and brain development. Moreover, functional enrichment analyses of suggestive CpGs (p<1x10-4) revealed gene-sets involved in placenta development, foetus formation and brain growth. These findings suggest that placental DNAm could be a mechanism contributing to the alteration of important pathways in the placenta that have a consequence on the offspring’s brain development and cognitive function.
DOI: 10.15468/dl.728jnh
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ixora delicatula Keay"
 ]
}

 The dataset includes 22 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104052-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13380202
title: Pocillopora Damicornis Fresh Sample

description: More information on the methods used to generate this model can be found in:



L. Gutierrez-Heredia, C. Keogh, E. G. Reynaud, Assessing the Capabilities of Additive Manufacturing Technologies for Coral Studies, Education, and Monitoring. Front. Mar. Sci. 5 (2018), doi:10.3389/fmars.2018.00278
DOI: 10.5281/zenodo.13380203
title: Pocillopora Damicornis Fresh Sample

description: More information on the methods used to generate this model can be found in:



L. Gutierrez-Heredia, C. Keogh, E. G. Reynaud, Assessing the Capabilities of Additive Manufacturing Technologies for Coral Studies, Education, and Monitoring. Front. Mar. Sci. 5 (2018), doi:10.3389/fmars.2018.00278
DOI: 10.3886/e187562
title: Data and Code for: Distortion by Audit: Evidence from Public Procurement

description: Public sector audits are a key element of state capacity. However, we find that they can create unintended distortions. Regression discontinuity analysis from Chile shows that audits lowered the use of auctions for public procurement, reduced supplier competition, and increased the likelihood of incumbent, small, and local firms winning contracts. Looking inside the black box of the audit process reveals that relative to comparable direct contracts, auctions underwent more than twice as many checks and led to twice as many detected infractions. Procurement officers perceive the consequences of such detected infractions as severe. These findings show that standard audit protocols can mechanically discourage the use of more regulated, complex and transparent procedures that involve more auditable steps.
description: N/A
description: Response Rates: <b>Online survey</b>. Of the total of 790 officers contacted, 213 responded to the survey, resulting in a response rate of 27%.
description: Presence of Common Scales: <b>Online survey</b>. Some questions in the online questionnaire have a finite list of responses, namely:<br>Severity. 1 to 10 scale, where 1 means "not serious at all" and 10 means "very serious".Likelihood. Never (1) A little likely (2) Very likely (3) Don't know (4).Never (1) Sometimes (2) Frequently (3)
description: <b>Online survey</b>. The sample frame was defined following a two-stage procedure. In the first stage, we identified the entities that have been audited for the period 2015-2021 using two different sources: (i) Information provided by the CGR (2015-2021), and (ii). Information scraped from the CGR webpage (2016-2020). We must highlight that both datasets only include audits for which a final report has been published. To define the sample frame at the entity level, we defined four eligibility criteria: <br>Include entities that have been audited in the past couple of years (2019-2020). Exclude entities audited in “Public Works” in the last 5 years Exclude entities audited in “Special Investigations” in the last 5 yearsExclude entities that couldn’t be uniquely identified in the ChileCompra system.213 out of 1,956 entities met these 4 eligibility criteria. For the second stage, procurement officers that belong to the 213 entities chosen in the first stage, were considered part of the final sample if they meet the following criteria:<br>Users that have been active for at least 2 years in the ChileCompra systemUsers whose last date of activity in the ChileCompra system is greater than or equal to January 2019.Users whose role in the ChileCompra system is “operator” or “supervisor”.The personal information and contact details of the procurement officers are publicly available on ChileCompra’s website. 790 out of 5,835 procurement officers met the eligibility criteria. The 790 procurement officials were contacted through email in 7 groups in two different survey rounds.
description: Chilean public entities. Chilean procurement officers. Smallest Geographic Unit: Chile
description: other; web-based survey; N/A
DOI: 10.15468/dl.fvajwu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rhizanthella gardneri R.S.Rogers)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104054-240626123714530/datasets/export for details.
DOI: 10.15468/dl.6h9scw
title: Occurrence Download

description: A dataset containing 337 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tradescantia fluminensis Vell.",
 "Country is Brazil",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 337 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104053-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.96ezsz
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Rhopalodontus baudueri Abeille de Perrin, 1874",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104055-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26831467
title: Source data and detailed statistics

description: Additional file 1: Source data and detailed statistics for manuscript entitled 'The basolateral amygdala and striatum propagate alpha-synuclein pathology causing increased fear response in a Parkinson's disease model
DOI: 10.15468/dl.vf7h7v
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Mughiphantes johannislupi (Denis, 1953)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104057-240626123714530/datasets/export for details.
DOI: 10.15468/dl.xjysud
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Schendyla monodi Brölemann, 1924",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104056-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21427/rr9x-ep08
title: Analysis of macular pigment carotenoids in human blood serum of glaucoma patients as a measure of ocular health: A Raman spectroscopic study
DOI: 10.15468/dl.jr85ke
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Thelymitra hygrophila R.J.Bates)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104059-240626123714530/datasets/export for details.
DOI: 10.15468/dl.tfecz9
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Specimen)",
 "Country is Belize",
 "OccurrenceStatus is Present",
 "TaxonKey is Ormosia macrocalyx Ducke"
 ]
}

 The dataset includes 19 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104061-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uf9gxr
title: Occurrence Download

description: A dataset containing 566 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tradescantia zebrina Bosse",
 "Country is Brazil",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 566 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104060-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fmp8dx
title: Occurrence Download

description: A dataset containing 14749 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Erebia alberganus von Prunner, 1798",
 "Year 1000-2024"
 ]
}

 The dataset includes 14749 records from 170 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104058-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.