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DOI: 10.17171/1-3-6033-13
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title: Data from JPL data

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DOI: 10.17171/1-3-6034-0
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title: Data from JPL data

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DOI: 10.17171/1-3-6036-5
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title: Data from JPL data

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title: Data from JPL data

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title: Data from JPL data

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DOI: 10.17171/1-3-6038-0
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title: Data from JPL data

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title: Data from JPL data

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title: Data from JPL data

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title: 6038
title: Data from JPL data

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DOI: 10.17171/1-3-6038-35
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title: Data from JPL data

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title: Data from JPL data

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title: Data from JPL data

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title: Data from JPL data

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DOI: 10.17171/1-3-6040-5
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title: Data from JPL data

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DOI: 10.17171/1-3-6040-6
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title: Data from JPL data

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DOI: 10.17171/1-3-6040-7
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DOI: 10.17171/1-3-6040-8
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title: Data from JPL data

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DOI: 10.17171/1-3-6042-2
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title: Data from JPL data

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title: Data from JPL data

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DOI: 10.17171/1-3-6042-4
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title: Data from JPL data

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DOI: 10.17171/1-3-6042-5
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title: Data from JPL data

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DOI: 10.17171/1-3-6042-6
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title: Data from JPL data

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DOI: 10.17171/1-3-6043-0
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DOI: 10.17171/1-3-6043-12
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title: 6043
title: Data from JPL data

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DOI: 10.17171/1-3-6043-100
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title: Data from JPL data

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DOI: 10.17171/1-3-6043-102
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DOI: 10.17171/1-3-6043-104
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title: Data from JPL data

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title: Data from JPL data

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DOI: 10.17171/1-3-6043-118
title: 6043
title: Data from JPL data

description: Babylonian Diaries
DOI: 10.17171/1-3-6043-120
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DOI: 10.17171/1-3-6043-122
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title: Data from JPL data

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title: Data from JPL data

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title: 6043
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title: Data from JPL data

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DOI: 10.17171/1-3-6043-18
title: 6043
title: Data from JPL data

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title: Data from JPL data

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DOI: 10.17171/1-3-6043-28
title: 6043
title: Data from JPL data

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DOI: 10.17171/1-3-6043-30
title: 6043
title: Data from JPL data

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DOI: 10.17171/1-3-6043-40
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DOI: 10.17171/1-3-6043-42
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title: Data from JPL data

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DOI: 10.17171/1-3-6043-105
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DOI: 10.17171/1-3-6043-110
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title: Data from JPL data

description: Babylonian Diaries
DOI: 10.17171/1-3-6047-6
title: 6047
title: Data from JPL data

description: Babylonian Diaries
DOI: 10.17171/1-3-6048-36
title: 6048
title: Data from JPL data

description: Babylonian Diaries
DOI: 10.17171/1-3-6048-56
title: 6048
title: Data from JPL data

description: Babylonian Diaries
DOI: 10.17171/1-3-6048-68
title: 6048
title: Data from JPL data

description: Babylonian Diaries
DOI: 10.6084/m9.figshare.9929054.v1
title: Agricultural intensification drives the evolution of host specialism in the ecological generalist bacterium Campylobacter jejuni

description: Modern agriculture has dramatically changed the distribution of animal species on earth. Changes to host ecology have a major impact on the microbiota, potentially increasing the risk of zoonotic pathogens being transmitted to humans, but the impact of intensive livestock production on host-associated bacteria has rarely been studied. Here we use large isolate collections and comparative genomics techniques, linked to phenotype studies, to understand the time-scale and genomic adaptations that promote proliferation of the most common food-born bacterial pathogen (<i>C. jejuni</i>) in the most extensively farmed agricultural mammal (cattle). Our findings reveal the emergence of cattle specialist <i>C. jejuni </i>lineages from a background of host generalist strains that coincided with the dramatic rise in cattle numbers in the 20<sup>th</sup> century. Cattle adaptation was facilitated by horizontal gene transfer and significant gene gain and loss, related to differences in host diet, anatomy and histology, leading to the proliferation of globally disseminated cattle specialists of major public health importance. This work highlights how genomic plasticity can allow important zoonotic pathogens to exploit altered niches in the face of anthropogenic change and provides information for mitigating some of the risks posed by modern agricultural systems.
DOI: 10.6084/m9.figshare.9929009
title: Data from Capo et al (2019) Plos ONE "Droplet digital PCR assays for the quantification of brown trout (Salmo trutta) and Arctic char (Salvelinus alpinus) from environmental DNA collected in the water of mountain lakes"

description: This data include the .glp files generated by the QX200 droplet digital PCR reader (and associated software) and a description of the samples analyses in each ddPCR run (README.txt file). This data corresponds to the multixplex ddPCR amplification of two targets : brown trout (St1 molecular tools) and arctic char (Sa1 molecular tools) cytB mitochondrial DNA. <br>
DOI: 10.15131/shef.data.9928994
title: Suspect loci BED files

description: Suspect loci identified in datasets 1, 2 and 3 in our Genome Research article.
DOI: 10.6084/m9.figshare.9929009.v1
title: Data from manuscript "Droplet digital PCR assays for the quantification of brown trout (Salmo trutta) and Arctic char (Salvelinus alpinus) from environmental DNA collected in mountain lakes"

description: This data include the .glp files generated by the QX200 droplet digital PCR reader (and associated software) and a description of the samples analyses in each ddPCR run (README.txt file). This data corresponds to the multixplex ddPCR amplification of two targets : brown trout (St1 molecular tools) and arctic char (Sa1 molecular tools) cytB mitochondrial DNA. <br>
DOI: 10.6084/m9.figshare.9929009.v2
title: Data from Capo et al (2019) Plos ONE "Droplet digital PCR assays for the quantification of brown trout (Salmo trutta) and Arctic char (Salvelinus alpinus) from environmental DNA collected in the water of mountain lakes"

description: This data include the .glp files generated by the QX200 droplet digital PCR reader (and associated software) and a description of the samples analyses in each ddPCR run (README.txt file). This data corresponds to the multixplex ddPCR amplification of two targets : brown trout (St1 molecular tools) and arctic char (Sa1 molecular tools) cytB mitochondrial DNA. <br>
DOI: 10.15131/shef.data.9928994.v1
title: Suspect loci BED files

description: Suspect loci identified in datasets 1, 2 and 3 in our Genome Research article.
DOI: 10.6084/m9.figshare.9928949
title: Raw electron microscopy datasets

description: All the raw data used in the DenoisEM paper
DOI: 10.6084/m9.figshare.9928949.v1
title: Raw electron microscopy datasets

description: All the raw data used in the DenoisEM paper