cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5073/20210531-152902
title: Data from: The draft chromosome-level genome assembly of tetraploid ground cherry (Prunus fruticosa Pall.) from long reads

description: Cherries are among the most popular fruits among consumers and are grown for industrial processing or fresh consumption. The cultivation and breeding of cherries faces new challenges in the future, not least due to climate change. Cultivation is becoming increasingly difficult due to changing climatic conditions, diseases and pests. Therefore, the market demands new varieties with high fruit quality and adaptation to locally changing conditions. Breeding for tree fruit is a long-term task, though, and tools to facilitate this process are unfortunately not yet available to a sufficient extent. Rapid progress in third-generation sequencing technologies enables breeders to explore and exploit the genomic information underlying economical important traits. We used Oxford Nanopore Technology PromethION platform and R10.3 pore type to sequence the genome of tetraploid ground cherry (Prunus fruticosa). The final sequence has been deposited at DDBJ/ENA/GenBank under the accession JAHHUK000000000. A specific description of the work can be viewed at https://biorxiv.org/cgi/content/short/2021.06.01.446499v1. The version described in this paper is version JAHHUK010000000.
The data on this platform includes 17 files, supports the assembling and annotation procedure, and provides insights into this challenging work. 
As a result, five assemblies (MiniasmMinimap.fasta, medaka.fasta, raconpolished.fasta, purged.fasta, purged2.fasta) have been processed to generate a draft genome assembly. 
The final genome sequence was masked (genome.fa.masked.gz, genome.fa.out, genome.fa.tbl) and annotated using Braker 1 and Braker 2, GeMoMa pipeline and eight reference datasets from other Prunus species. 
The final structural annotation, coding sequences and protein predictions are provided for future studies (GeMoMa_Annotation_filtered_predictions_8ref_RNAseq_Braker.gff, GeMoMa_Annotation_filtered_predictions_8ref_RNAseq_Braker_assignment.tabular, GeMoMa_Annotation_filtered_predictions_8ref_RNAseq_Braker_cds-parts.fasta, GeMoMa_Annotation_filtered_predictions_8ref_RNAseq_Braker_proteins.fasta). 
The functional prediction was performed with InterProScan (Results IPS.xlsx). 
In addition, the sequences and annotation of the chloroplast (Pf_chloroplast_1.0.fasta, GeSeqJob-20210201-124142_utg000088l_segment0_1_GFF3.gff3) and mitochondrion (Pf_mitochondria_1.0, GeSeqJob-20210202-114557_utg001396l_trimmed_GFF3.gff3) are presented.
DOI: 10.5281/zenodo.17933635
title: Texts and AI generated translations described in the presentation 'The New Face in the Scholars Study: AI Output in the Thesaurus Linguae Sericae'

description: This dataset contains the ai generated translations described in thepresentation /The New Face in the Scholars Study: AI Output in the Thesaurus Linguae Sericae/.

The texts that have been used to generate the translation are in the '/texts' folder, while the generated output is in '/ai-output'.  Both filesets are in XML following the TEI Guidelines.  The tei:seg elements of the output files have a an attribute '@corresp', which corresponds to the tei:seg element with this ID value in the text. The generic prompts used to generate the translation are in the tei:creation element. 

The translations are as of Dec 12, 2025 in the format generated from the responses of the AI vendors.  It is likely that the outputs displayed on the HXWD.org platform will be improved in the future.
DOI: 10.5281/zenodo.17933634
title: Texts and AI generated translations described in the presentation 'The New Face in the Scholars Study: AI Output in the Thesaurus Linguae Sericae'

description: This dataset contains the ai generated translations described in thepresentation /The New Face in the Scholars Study: AI Output in the Thesaurus Linguae Sericae/.

The texts that have been used to generate the translation are in the '/texts' folder, while the generated output is in '/ai-output'.  Both filesets are in XML following the TEI Guidelines.  The tei:seg elements of the output files have a an attribute '@corresp', which corresponds to the tei:seg element with this ID value in the text. The generic prompts used to generate the translation are in the tei:creation element. 

The translations are as of Dec 12, 2025 in the format generated from the responses of the AI vendors.  It is likely that the outputs displayed on the HXWD.org platform will be improved in the future.
DOI: 10.6084/m9.figshare.30866417
title: White et al Behavioral Ecology 2026 Diel effects on antipredator behavior

description: Response (activity) of terrestrial salamanders to chemical cues from predators is influenced by activity period of the predator and time of day of the encounter. Edge behavior (thigmotaxis) was influenced by time of day, with salamanders showing more edge behavior in the daytime than at night, as expected for a nocturnal prey species. Salamanders were Ozark Zigzag Salamanders (<i>Plethodon angusticlavius</i>) and snakes were Garter Snakes (<i>Thamnophis sirtalis</i>--diurnal predator) and Ring-necked Snakes (<i>Didophis punctatus</i>--nocturnal predator).
DOI: 10.6084/m9.figshare.30866417.v1
title: White et al Behavioral Ecology 2026 Diel effects on antipredator behavior

description: Response (activity) of terrestrial salamanders to chemical cues from predators is influenced by activity period of the predator and time of day of the encounter. Edge behavior (thigmotaxis) was influenced by time of day, with salamanders showing more edge behavior in the daytime than at night, as expected for a nocturnal prey species. Salamanders were Ozark Zigzag Salamanders (<i>Plethodon angusticlavius</i>) and snakes were Garter Snakes (<i>Thamnophis sirtalis</i>--diurnal predator) and Ring-necked Snakes (<i>Didophis punctatus</i>--nocturnal predator).
DOI: 10.17605/osf.io/u5pjv
title: Supplemental materials for paper: Affect, emotions, and crime decision making: Emerging insights from immersive 360° video experiments

description: Accepted at Journal of Experimental Criminology (01/29/2024)
DOI: 10.15468/dl.m7dqa5
title: Occurrence Download

description: A dataset containing 379197 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vespa velutina"
 ]
}

 The dataset includes 379197 records from 883 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054126-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3q9rbq
title: Occurrence Download

description: A dataset containing 194 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xanthomonas populi",
 "OccurrenceStatus is Present",
 "Country is not null",
 "Year is not null"
 ]
}

 The dataset includes 194 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018542-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qckgus
title: Occurrence Download

description: A dataset containing 238 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Bolitobius castaneus (Stephens, 1832)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 238 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018543-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9nn9ce
title: Occurrence Download

description: A dataset containing 4739 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xiphinema Cobb, 1913",
 "OccurrenceStatus is Present",
 "Country is not null",
 "Year is not null"
 ]
}

 The dataset includes 4739 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018544-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2kj1y3
title: CCDC 2368925: Experimental Crystal Structure Determination

description: Related Article: Jiu-Yang Liu, Ming Zhu, Feng-Wen Zhang, Hao-Fei Ni, Zhi-Long Li, Bo Zhuang, Kun Ding, Da-Wei Fu, Hai-Feng Lu, Meng-Meng Lun|2024|Inorg.Chem.Front.|11|6418|doi:10.1039/D4QI01774A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hhy21
title: CCDC 2309223: Experimental Crystal Structure Determination

description: Related Article: Kseniia Boidachenko, Michal Liberka, Junhao Wang, Hiroko Tokoro, Shin-ichi Ohkoshi, Szymon Chorazy|2024|J.Mater.Chem.C|12|14964|doi:10.1039/D4TC01042F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hhy32
title: CCDC 2309224: Experimental Crystal Structure Determination

description: Related Article: Kseniia Boidachenko, Michal Liberka, Junhao Wang, Hiroko Tokoro, Shin-ichi Ohkoshi, Szymon Chorazy|2024|J.Mater.Chem.C|12|14964|doi:10.1039/D4TC01042F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hhy43
title: CCDC 2309225: Experimental Crystal Structure Determination

description: Related Article: Kseniia Boidachenko, Michal Liberka, Junhao Wang, Hiroko Tokoro, Shin-ichi Ohkoshi, Szymon Chorazy|2024|J.Mater.Chem.C|12|14964|doi:10.1039/D4TC01042F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hhy54
title: CCDC 2309226: Experimental Crystal Structure Determination

description: Related Article: Kseniia Boidachenko, Michal Liberka, Junhao Wang, Hiroko Tokoro, Shin-ichi Ohkoshi, Szymon Chorazy|2024|J.Mater.Chem.C|12|14964|doi:10.1039/D4TC01042F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hhy65
title: CCDC 2309227: Experimental Crystal Structure Determination

description: Related Article: Kseniia Boidachenko, Michal Liberka, Junhao Wang, Hiroko Tokoro, Shin-ichi Ohkoshi, Szymon Chorazy|2024|J.Mater.Chem.C|12|14964|doi:10.1039/D4TC01042F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hhy76
title: CCDC 2309228: Experimental Crystal Structure Determination

description: Related Article: Kseniia Boidachenko, Michal Liberka, Junhao Wang, Hiroko Tokoro, Shin-ichi Ohkoshi, Szymon Chorazy|2024|J.Mater.Chem.C|12|14964|doi:10.1039/D4TC01042F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hhy87
title: CCDC 2309229: Experimental Crystal Structure Determination

description: Related Article: Kseniia Boidachenko, Michal Liberka, Junhao Wang, Hiroko Tokoro, Shin-ichi Ohkoshi, Szymon Chorazy|2024|J.Mater.Chem.C|12|14964|doi:10.1039/D4TC01042F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hhy98
title: CCDC 2309230: Experimental Crystal Structure Determination

description: Related Article: Kseniia Boidachenko, Michal Liberka, Junhao Wang, Hiroko Tokoro, Shin-ichi Ohkoshi, Szymon Chorazy|2024|J.Mater.Chem.C|12|14964|doi:10.1039/D4TC01042F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.wrvctt
title: Occurrence Download

description: A dataset containing 1767278 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "TaxonKey is Plantae",
 "Year 2015-2020"
 ]
}

 The dataset includes 1767278 records from 873 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018440-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2hhyb9
title: CCDC 2309231: Experimental Crystal Structure Determination

description: Related Article: Kseniia Boidachenko, Michal Liberka, Junhao Wang, Hiroko Tokoro, Shin-ichi Ohkoshi, Szymon Chorazy|2024|J.Mater.Chem.C|12|14964|doi:10.1039/D4TC01042F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hhycb
title: CCDC 2309232: Experimental Crystal Structure Determination

description: Related Article: Kseniia Boidachenko, Michal Liberka, Junhao Wang, Hiroko Tokoro, Shin-ichi Ohkoshi, Szymon Chorazy|2024|J.Mater.Chem.C|12|14964|doi:10.1039/D4TC01042F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c5d10
title: CCDC 2179921: Experimental Crystal Structure Determination

description: Related Article: Monika Trzebiatowska, Dorota A. Kowalska, Agnieszka Ciżman, Natalia A. Wójcik, Ryszard J. Barczyński, Adam Pikul, Jan K. Zaręba, Marcin Palewicz, Tomasz Piasecki, Krystian Roleder, Marek Gusowski, Mirosław Mączka|2024|J.Mater.Chem.C|12|15119|doi:10.1039/D4TC02745K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c5d21
title: CCDC 2179922: Experimental Crystal Structure Determination

description: Related Article: Monika Trzebiatowska, Dorota A. Kowalska, Agnieszka Ciżman, Natalia A. Wójcik, Ryszard J. Barczyński, Adam Pikul, Jan K. Zaręba, Marcin Palewicz, Tomasz Piasecki, Krystian Roleder, Marek Gusowski, Mirosław Mączka|2024|J.Mater.Chem.C|12|15119|doi:10.1039/D4TC02745K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.n3u27t
title: Occurrence Download

description: A dataset containing 1872 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Sepedophilus littoreus (Linnaeus, 1758)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 1872 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018546-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2c5d32
title: CCDC 2179923: Experimental Crystal Structure Determination

description: Related Article: Monika Trzebiatowska, Dorota A. Kowalska, Agnieszka Ciżman, Natalia A. Wójcik, Ryszard J. Barczyński, Adam Pikul, Jan K. Zaręba, Marcin Palewicz, Tomasz Piasecki, Krystian Roleder, Marek Gusowski, Mirosław Mączka|2024|J.Mater.Chem.C|12|15119|doi:10.1039/D4TC02745K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c5d43
title: CCDC 2179924: Experimental Crystal Structure Determination

description: Related Article: Monika Trzebiatowska, Dorota A. Kowalska, Agnieszka Ciżman, Natalia A. Wójcik, Ryszard J. Barczyński, Adam Pikul, Jan K. Zaręba, Marcin Palewicz, Tomasz Piasecki, Krystian Roleder, Marek Gusowski, Mirosław Mączka|2024|J.Mater.Chem.C|12|15119|doi:10.1039/D4TC02745K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gsrpq
title: CCDC 2287914: Experimental Crystal Structure Determination

description: Related Article: Monika Trzebiatowska, Dorota A. Kowalska, Agnieszka Ciżman, Natalia A. Wójcik, Ryszard J. Barczyński, Adam Pikul, Jan K. Zaręba, Marcin Palewicz, Tomasz Piasecki, Krystian Roleder, Marek Gusowski, Mirosław Mączka|2024|J.Mater.Chem.C|12|15119|doi:10.1039/D4TC02745K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.zh3vsx
title: Occurrence Download

description: A dataset containing 60032 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Acer saccharinum L."
 ]
 },
 "HasCoordinate is TRUE",
 "Year is greater than or equal to 1990",
 "Year is less than or equal to 2022",
 "DecimalLatitude is greater than or equal to 24.1271113347408",
 "DecimalLatitude is less than or equal to 56.57271678546475",
 "DecimalLongitude is greater than or equal to -89.31544323258166",
 "DecimalLongitude is less than or equal to -51.736362059213945",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 60032 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018545-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2kp5v9
title: CCDC 2373851: Experimental Crystal Structure Determination

description: Related Article: Daniela Maggioni, Pierluigi Mercandelli, Lucia Carlucci|2025|Inorg.Chim.Acta|574|122384|doi:10.1016/j.ica.2024.122384
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.ksrswz
title: Occurrence Download

description: A dataset containing 805 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xylella fastidiosa Wells et al., 1987",
 "OccurrenceStatus is Present",
 "Country is not null",
 "Year is not null"
 ]
}

 The dataset includes 805 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018547-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8y8b9j
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Ceroxylon ventricosum Burret"
 ]
}

 The dataset includes 51 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018548-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5jvpw5
title: Occurrence Download

description: A dataset containing 242 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pristimantis festae (Peracca, 1904)"
 ]
}

 The dataset includes 242 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018549-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.