cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3608873_d14.v1
title: Additional file 14: Table S11. of Preliminary analysis of Psoroptes ovis transcriptome in different developmental stages

description: Allergen genes which resulted in Blast hits with genes from other mites and ticks among the unigenes of P. ovis in the two developmental stages. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.c.3608933_d2.v1
title: Additional file 1: of Complete genome sequence of and proposal of Thermofilum uzonense sp. nov. a novel hyperthermophilic crenarchaeon and emended description of the genus Thermofilum

description: Thermofilaceae representatives. List of all, according to the latest releases of RDP (Release 11, Update 3) and Silva (SSU r122) databases, Thermofilaceae isolates and clones and their isolation sources. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3608909_d6.v1
title: Additional file 4: of A nonsense mutation in B3GALNT2 is concordant with hydrocephalus in Friesian horses

description: Coding exons selected for Next Generation Sequencing in Friesian horses with hydrocephalus. A .bed file describing the targeted regions, including chromosome number, start and end position (in base pair; Equus caballus EquCab2.0 reference genome [29]). (TXT 34Â kb)
DOI: 10.6084/m9.figshare.c.3608873_d15.v1
title: Additional file 5: Table S5. of Preliminary analysis of Psoroptes ovis transcriptome in different developmental stages

description: Detailed KEGG pathway categories of the P. ovis unigenes. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3608873_d16.v1
title: Additional file 4: Table S4. of Preliminary analysis of Psoroptes ovis transcriptome in different developmental stages

description: The distribution of splice length. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3608933_d4.v1
title: Additional file 5: of Complete genome sequence of and proposal of Thermofilum uzonense sp. nov. a novel hyperthermophilic crenarchaeon and emended description of the genus Thermofilum

description: Thermoproteaceae sequences. List of 13 Thermoproteaceae sequences, collapsed in a triangle on the Fig.Â  2. (TXT 601 bytes)
DOI: 10.6084/m9.figshare.c.3608933_d5.v1
title: Additional file 4: of Complete genome sequence of and proposal of Thermofilum uzonense sp. nov. a novel hyperthermophilic crenarchaeon and emended description of the genus Thermofilum

description: COGs distribution by functional groups. Distribution of Thermofilum representatives COGs by functional groups (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3608873_d18.v1
title: Additional file 19: Table S16. of Preliminary analysis of Psoroptes ovis transcriptome in different developmental stages

description: Allergen genes which did not result in Blast hits with genes from other mites or ticks among the downregulated DEGs. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3608954_d6.v1
title: Additional file 3: of Evolutionary patterns of Toll-like receptor signaling pathway genes in the Suidae

description: Multiple sequence alignments of the TLR signaling pathway orthologs across the suid species. Asteriks indicate same nucleotide and â  -â   represents missing nucleotide. (TXT 1867Â kb)
DOI: 10.6084/m9.figshare.c.3609002_d1.v1
title: Additional file 1: Table S1. of CAP protein superfamily members in Toxocara canis

description: CAP protein-encoding genes of Toxocara canis. For each predicted protein, the genomic scaffolds to which they map, including the length of the inferred amino acid sequences and InterProScan matches (including domains, motifs and signal peptides), are shown. Table S2. Pairwise comparisons of 28 predicted Toxocara canis CAP protein sequences with homologs in Caenorhabditis elegans and parasitic nematodes including Ascaris lumbricoides (Al), Anisakis simplex (As), Ascaris suum (Asu), Brugia malayi (Bm), Caenorhabditis japonica (Cj), Caenorhabditis sinica (Cs), Dirofilaria immitis (Di), Dracunculus medinensis (Dm), Elaeophora elaphi (Ee), Enterobius vermicularis (Ev), Loa loa (Ll), Litomosoides sigmodontis (Ls), Oesophagostomum dentatum (Od), Onchocerca ochengi (Oo), Onchocerca volvulus (Ov), Parascaris equorum (Pe), Panagrellus redivivus (Pr), Steinernema carpocapsae (Sc), Steinernema feltiae (Sf), Steinernema glaseri (Sg), Syphacia muris (Sm), Steinernema monticolum (Smo), Steinernema scapterisci (Ss) and Thelazia callipaeda (Tc), with gene identification (ID) and identity (%) indicated in brackets. Table S3. Toxocara canis cap genes (Tc-cap) differentially transcribed (upregulated; log2-fold change: &gt; 2) in individual life stages/sexes/tissues (pairwise comparisons). Table S4. Transcription of Toxocara canis cap genes (Tc-cap) in different life stages/sexes/tissues. Values are transcripts per million (TPM). (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.c.3609026_d1.v1
title: Additional file 1: Table S1. of Transcriptional regulatory networks controlling woolliness in peach in response to preharvest gibberellin application and cold storage

description: Genes exhibiting significant differential expression in peach. Analyses were performed as a factorial 2 Ă  2 design, using the LIMMA (Linear Models for Microarray and RNAseq Data) package (Smyth, 2005) at Bioconductor. (XLSX 4527 kb)
DOI: 10.6084/m9.figshare.c.3609029_d1.v1
title: Additional file 1: of The gut microbiome as a target for regulatory T cell-based immunotherapy: induction of regulatory lymphocytes by oral administration of anti-LPS enriched colostrum alleviates immune mediated colitis

description: Supplemenatry file with data of experiments. (XLS 116 kb)
DOI: 10.6084/m9.figshare.c.3609047_d6.v1
title: Additional file 18: Table S10. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

description: Differentially expressed contigs in the P. ulmi PSR-TK strain with a BLASTx (E-value treshold e-15) hit against amino acid translations of differentially expressed genes in SR-VP and SR-TK, two spirodiclofen resistant T. urticae strains [20]. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3609047_d8.v1
title: Additional file 17: Table S9. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

description: Differentially expressed contigs in the P. ulmi PSR-TK strain relative to the HS strain (Benjamini-Hochberg adjusted p-value ≤ 0.05 and │FC│ &gt; 2). (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3609092_d1.v1
title: MOESM1 of The spatial structure of chronic morbidity: evidence from UK census returns

description: Additional file 1. R syntax. This syntax contains commands to download Office for National Statistics internal migrations datasets, process them and compute an interaction matrix of size 348 $$\times$$ Ă  348 following methods $$\cdot$$ Âˇ .Ck and $$\cdot$$ Âˇ .Dk (see Table 1). The output can be used as a spatial weights matrix in spatial analyses.
DOI: 10.6084/m9.figshare.c.3609095_d1.v1
title: Additional file 1: of Comparative genome analysis and genome evolution of members of the magnaporthaceae family of fungi

description: List of genomes analyzed by OrthoMCL. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3609047_d9.v1
title: Additional file 4: Table S2. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

description: BLAST2GO analysis of P. ulmi transcriptome. (XLSX 12041 kb)
DOI: 10.6084/m9.figshare.c.3609095_d2.v1
title: Additional file 3: of Comparative genome analysis and genome evolution of members of the magnaporthaceae family of fungi

description: OrthoMCL clusters. (TXT 8405Â kb)
DOI: 10.6084/m9.figshare.c.3609047_d10.v1
title: Additional file 9: Table S4. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

description: Annotation details and accession numbers of the carboxylcholinesterases. (XLSX 171 kb)
DOI: 10.6084/m9.figshare.c.3609047_d11.v1
title: Additional file 12: Table S7. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

description: Annotation details and accession numbers of HTGs. (XLSX 159 kb)
DOI: 10.15468/dl.8phy97
title: Occurrence Download

description: A dataset containing 564 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Honduras",
 "TaxonKey is Peromyscus Gloger, 1841"
 ]
}

 The dataset includes 564 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005506-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3609047_d18.v1
title: Additional file 16: Table S8. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

description: The number of mapped RNA reads per contig for both P. ulmi strains (HS and PSR-TK). Mapped reads were counted using htseq-count, included in the HTSeq python package [92]. (XLSX 2544 kb)
DOI: 10.6084/m9.figshare.c.3609047_d19.v1
title: Additional file 2: File S1. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

description: Complete transcriptome assembly of P. citri reassembled from raw reads data [33]. (Format: FASTA, examination of this file requires the BioEdit program available at http://www.mbio.ncsu.edu/bioedit/bioedit.html . (FAS 19163 kb)
DOI: 10.6084/m9.figshare.c.3609047_d20.v1
title: Additional file 1: Table S1. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

description: Alignment summary for the CLC and Velvet/Oases assemblies. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3609149_d5.v1
title: Additional file 7 of Systematic noise degrades gene co-expression signals but can be corrected

description: Table of arrays removed during preprocessing in each study. (CSV 2.80 kb)
DOI: 10.6084/m9.figshare.c.3609224_d2.v1
title: Additional file 5: of The protective role of autophagy in experimental osteoarthritis, and the therapeutic effects of Torin 1 on osteoarthritis by activating autophagy

description: LC3 in SW1353 cellsR2. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3609218_d3.v1
title: Additional file 7: Table S1. of RNA-seq based transcriptomic map reveals new insights into mouse salivary gland development and maturation

description: Developmental gene signature. Table S2. Common genes expressed between salivary gland, pancreas, skin, bladder and placenta. Table S3. Common genes expressed between salivary gland and pancreas. Table S4. Adult gene signature. Table S5. HPA data. Table S6. Human CAGE data. (XLSX 80 kb)
DOI: 10.6084/m9.figshare.c.3609224_d3.v1
title: Additional file 4: of The protective role of autophagy in experimental osteoarthritis, and the therapeutic effects of Torin 1 on osteoarthritis by activating autophagy

description: Beclin-1 in SW1353 cellsR2. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3609197_d6.v1
title: Additional file 2: of Differential expression of small RNAs under chemical stress and fed-batch fermentation in E. coli

description: Novel intergenic small RNAs detected in this study. (XLSX 130 kb)
DOI: 10.6084/m9.figshare.c.3609224_d4.v1
title: Additional file 7: of The protective role of autophagy in experimental osteoarthritis, and the therapeutic effects of Torin 1 on osteoarthritis by activating autophagy

description: Beclin-1 in rabbit OA modelR2. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3609224_d5.v1
title: Additional file 3: of The protective role of autophagy in experimental osteoarthritis, and the therapeutic effects of Torin 1 on osteoarthritis by activating autophagy

description: TIMP-1R2. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3609245_d1.v1
title: MOESM2 of Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak

description: Additional file 2: Table S2. Gene-by-gene information for DT8 and DT30 variants.
DOI: 10.6084/m9.figshare.c.3609245_d2.v1
title: MOESM5 of Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak

description: Additional file 5: Table S5. Annotation of the integrative and conjugative element of the DT30 isolate.
DOI: 10.6084/m9.figshare.c.3609224_d6.v1
title: Additional file 6: of The protective role of autophagy in experimental osteoarthritis, and the therapeutic effects of Torin 1 on osteoarthritis by activating autophagy

description: The Mankin ScoresR2. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3609224_d7.v1
title: Additional file 8: of The protective role of autophagy in experimental osteoarthritis, and the therapeutic effects of Torin 1 on osteoarthritis by activating autophagy

description: LC3 in rabbit OA modelR2. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3609245_d3.v1
title: MOESM3 of Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak

description: Additional file 3: Table S3. SNPs within the chromosome (excluding prophages) of DT8 and DT30 isolates.
DOI: 10.6084/m9.figshare.c.3609281_d3.v1
title: Additional file 3: of Impact of the primary care curriculum and its teaching formats on medical students’ perception of primary care: a cross-sectional study

description: Detailled Geneva students’ perception of the extent to which five key aspects of primary care were covered in the curriculum on a 4-point Likert scale from 1: “strongly disagree” to 4 “strongly agree”. Detailed Geneva students’ likelihood of becoming a primary care physician on a 4-point Likert scale from 1:”very unlikely” to 4: “very likely”, with an additional option 5: “no option”. CHAR1: Providing comprehensive care to patients of all ages, CHAR2: Psychosocial aspects, CHAR3: Clinical reasoning and decision analysis in an outpatient context, CHAR4: Managing uncertainty with ambulatory diagnostic resources, CHAR5: Coordinating different healthcare professionals, PCP: likelihood of becoming a primary care physician. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3609281_d4.v1
title: Additional file 4: of Impact of the primary care curriculum and its teaching formats on medical students’ perception of primary care: a cross-sectional study

description: Detailled Lausanne students’ perception of the extent to which five key aspects of primary care were covered in the curriculum on a 4-point Likert scale from 1: “strongly disagree” to 4 “strongly agree”. Detailed Lausanne students’ likelihood of becoming a primary care physician on a 4-point Likert scale from 1:”very unlikely” to 4: “very likely”, with an additional option 5: “no option”. CHAR1: Providing comprehensive care to patients of all ages, CHAR2: Psychosocial aspects, CHAR3: Clinical reasoning and decision analysis in an outpatient context, CHAR4: Managing uncertainty with ambulatory diagnostic resources, CHAR5: Coordinating different healthcare professionals, PCP: likelihood of becoming a primary care physician. (XLSX 9 kb)
DOI: 10.15468/dl.zdgmje
title: Occurrence Download

description: A dataset containing 224419 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Ocean Salmon Program - Barkley Sound Juvenile Salmon Study from 1987 to 1994"
 ]
}

 The dataset includes 224419 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037535-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3609323_d2.v1
title: Additional file 3: of The mysterious orphans of Mycoplasmataceae

description: Description of selected bacterial genomes. Difference between COGs and ORFans. (XLSX 314 kb)
DOI: 10.15468/dl.sy9pun
title: Occurrence Download

description: A dataset containing 542 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lasius neglectus Van Loon, Boomsma & Andrasfalvy, 1990"
 ]
}

 The dataset includes 542 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037539-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3609380_d1.v1
title: Additional file 3: of Computational recognition and analysis of hitherto uncharacterized nucleotide cyclase-like proteins in bacteria

description: A) Description of proteins used in the study. B) Description of proteins excluded from the study. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3609377_d2.v1
title: Additional file 1: Table S1. of Molecular cloning and characterization of a flavonoid-O-methyltransferase with broad substrate specificity and regioselectivity from Citrus depressa

description: Primers for cloning CdFOMT-coding genes from Citrus depressa. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3609380_d2.v1
title: Additional file 2: of Computational recognition and analysis of hitherto uncharacterized nucleotide cyclase-like proteins in bacteria

description: Detailed list of gene IDs of established nucleotide cyclases from eukaryotes and bacteria used in Fig.Â 4. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3609383_d1.v1
title: Additional file 3: Table S2. of Transcriptome profiling of wheat glumes in wild emmer, hulled landraces and modern cultivars

description: DEGs in landrace compared to wild wheat. (XLSX 184 kb)
DOI: 10.6084/m9.figshare.c.3609383_d2.v1
title: Additional file 4: Table S3. of Transcriptome profiling of wheat glumes in wild emmer, hulled landraces and modern cultivars

description: DEGs in domesticated compared to wild wheat. (XLSX 90 kb)
DOI: 10.6084/m9.figshare.c.3609404_d1.v1
title: Additional file 6: Table S1. of Crystal structure and DNA binding activity of a PadR family transcription regulator from hypervirulent Clostridium difficile R20291

description: Full list of oligonucleotides that were annealed and used in EMSA studies with cdPadR1. TheÂ .xlsx file includes the arbitrary number assigned to each oligonucleotide (column A); the genomic placement of the minimum nucleotide (column B); length in base pairs (bp, column C); indication of binding (+) or no binding detected (-) (column D); locus tag associated with the gene downstream of the oligonucleotide (column E); the annotated gene downstream of the oligonucleotide (column F); and the oligonucleotide sequence 5â ˛ to 3â ˛ (column G). (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3609410_d1.v1
title: Additional file 2: of 
                     In silico metabolic network analysis of Arabidopsis leaves

description: SBML file of full network. (XML 647 kb)
DOI: 10.15468/dl.fnwckb
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platacanthomys lasiurus Blyth, 1859"
 ]
}

 The dataset includes 18 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037540-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3609446_d1.v1
title: Additional file 2: of Plasma lipid profiling of different types of hepatic fibrosis induced by carbon tetrachloride and lomustine in rats

description: Supplementary tables. Table S1. Class, m/z, retention time, ion of detected and identified lipid molecules, and determined their fatty side chains. Table S2. Normalized levels of lipid molecules in individual samples. Table S3. Fold change and p-value of the levels of lipid molecules. (XLSX 317 kb)
DOI: 10.6084/m9.figshare.c.3609425_d5.v1
title: Additional file 1: Table S1. of Developmental transcriptome of resting cell formation in Mycobacterium smegmatis

description: List of Mycobacterium smegmatis mc2155 genes with statistically significant differential expression (log2 fold change &gt; 1, p
DOI: 10.15468/dl.xt48zr
title: Occurrence Download

description: A dataset containing 2782 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Brachyponera chinensis (Emery, 1895)"
 ]
}

 The dataset includes 2782 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037541-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3609500_d1.v1
title: Additional file 1: of A knowledge synthesis of culturally- and spiritually-sensitive end-of-life care: findings from a scoping review

description: A body of data consisting of key features, characteristics and summaries of all included studies. The file is entitled, â  CS_EoL_Data_Charting_Form_12Jan2015_FINALâ  . (XLS 605Â kb)
DOI: 10.6084/m9.figshare.c.3609458_d9.v1
title: Additional file 10: Table S3. of A global analysis of the complex landscape of isoforms and regulatory networks of p63 in human cells and tissues

description: Biological functions enriched in Î Np63 and TAp63 networks by IPA. Column A provides the diseases/biological functions, column B provides the p value of enrichment for the functions (calculated by Fisherâ  s exact test) and columns C and D provide the number and details of molecules that are involved in that function. (CSV 2 kb)
DOI: 10.6084/m9.figshare.28043525
title: ITN-corpus

description: ITN corpus from Wikipedia
DOI: 10.6084/m9.figshare.28043525.v1
title: ITN-corpus

description: ITN corpus from Wikipedia
DOI: 10.6084/m9.figshare.c.3609506_d2.v1
title: Additional file 3: of Systematic protein-protein interaction and pathway analyses in the idiopathic inflammatory myopathies

description: DAPPLE output. Excel file of the output provided by http://www.broadinstitute.org/mpg/dapple/dappleTMP.php from each DAPPLE analysis on SNPs, autoantibody targets, a subset of autoantibody targets and SNPs and autoantibody target subset combined (XLSX 6162 kb)
DOI: 10.5281/zenodo.13338189
title: MAR2PROTECT. Development and validation of an adsorption process for phosphate removal and recovery from municipal wastewater based on hydrotalcite-related materials

description: This dataset contains the data underlying the following publication: C. Maggetti, D. Pinelli, V. Di Federico, L. Sisti, T. Tabanelli, F. Cavani, D. Frascari, 2024. Development and validation of an adsorption process for phosphate removal and recovery from municipal wastewater based on hydrotalcite-related materials. Science of the Total Environment, 175509. https://doi.org/10.1016/j.scitotenv.2024.175509
DOI: 10.5281/zenodo.13338190
title: MAR2PROTECT. Development and validation of an adsorption process for phosphate removal and recovery from municipal wastewater based on hydrotalcite-related materials

description: This dataset contains the data underlying the following publication: C. Maggetti, D. Pinelli, V. Di Federico, L. Sisti, T. Tabanelli, F. Cavani, D. Frascari, 2024. Development and validation of an adsorption process for phosphate removal and recovery from municipal wastewater based on hydrotalcite-related materials. Science of the Total Environment, 175509. https://doi.org/10.1016/j.scitotenv.2024.175509