cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17864/1947.74
title: Dataset supporting a project of developing a nanoHPLC-MALDI MS/MS workflow employing CID of multiply charged proteolytic peptides for bottom-up proteomics

description: Dataset contains two sets of LC-MALDI MS/MS runs performed on an in-house developed AP-MALDI source attached to a commercial mass spectrometer, as well as a complementary LC-ESI MS/MS dataset. Other data include experiments on AP-MALDI MS signal duration and MS/MS experiments.
description: The dataset contains data that was generated using a commercial mass spectrometer Synapt-G2Si (Waters) equipped with an in-house developed AP-MALDI ion source. Masslynx software (ver. 4.1; Waters) was used to collect and process the data. All data files contain a _HEADER file with relevant instrument settings and employed methods recorded. Manuscript in preparation at time of data deposit entitled 'A nanoHPLC-MALDI MS/MS workflow employing CID of multiply charged proteolytic peptides for bottom-up proteomics' by P.Ryumin, J.Brown, M.Morris, R.Cramer contains the methods section where the exact procedures of data acquisition are described.
description: Only the data starting with [ESI, FA, TFA] was processed to compensate systematic mass accuracy errors. For this the 'Modify Calibration' method within MassLynx software was used.
DOI: 10.48370/ofd/s30r0m/v3q3j1
title: IBL_coll_1821_ApodemusFlavicollis_1947_scan.jpg

description: :unav
DOI: 10.48370/ofd/s30r0m/rnct86
title: IBL_coll_1821_ApodemusFlavicollis_1947_scan_ct.swf

description: :unav
DOI: 10.17864/1947.40
title: TAMSAT Daily Rainfall Estimates

description: The dataset comprises high resolution (0.0375 degrees) satellite-derived daily rainfall estimates for all Africa from January 1983 to December 2015 (data from 2016 onwards can be downloaded from the TAMSAT website: http://www.met.reading.ac.uk/~tamsat). The dataset is derived from the TAMSAT African Rainfall Climatology And Time-series (TARCAT) dataset (1983-present). Further details can be found in the daily data guide for users, available from the TAMSAT website.
DOI: 10.48370/ofd/s30r0m
title: Apodemus flavicollis - IBL_1821, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute PAS. Collected 1947-08-21, in: Białowieża National Park, Poland. Material type: head
DOI: 10.17864/1947.50
title: Valuing insect pollinators for UK apple production

description: Data on the effectiveness of different pollinator taxa for apple pollination collected from flight cage manipulations record the effects of different numbers of floral visits by four pollinator species on fruit set and seed set in apples. Field data on flower visitation to different varieties of UK apple orchards in Kent are recorded as number of visits made by different pollinator taxa during transect walks or stationary observations. Data from experimental manipulations to determine the dependence on insect pollination of these apple varieties record fruit set, seed set and apple quality between open pollinated and pollinator-excluded treatments.
DOI: 10.17864/1947.51
title: Partial eclipse, 20 March 2015: Met Office Unified Model simulations

description: Simulations of the impact of the partial eclipse on 20 March 2015 on UK weather using the Met Office's UKV configuration of the MetUM forecast model. The data were generated using the 'UKV' variable resolution forecast model in precisely the configuration used by the Met Office on the day of the eclipse. The simulations are based on version 9.0 of the Met Office's Unified Model (MetUM http://www.metoffice.gov.uk/research/modelling-systems/unified-model). The precise configuration is designated in the Met Office as 'Parallel Suite 35' (PS35), which includes a new dynamical core (ENDGAME) based upon iterative solution, and a 'blended' version of the boundary-layer scheme (in the high-resolution model), the main impact of which, at these resolutions, is to use horizontal mixing based upon that diagnosed in the vertical direction within the boundary layer. Two runs were performed, detailed in the paper: Clark, P. (2016) Numerical simulations of the impact of the 20 March 2015 eclipse on UK weather. Philosophical Transactions of the Royal Society. Part A. ISSN 1364-503X (in press). Both use initial and boundary conditions used by the 03 UTC run of UKV on 20/03/2015. One run reproduces the operational run, taking no account of the eclipse, the second includes the simulated impact of the eclipse on n incoming solar radiation.
description: Numerical Model Output
DOI: 10.17864/1947.42
title: Analyses of the relationship between photoperiod sensitivity and flowering duration in wheat

description: Wheat lines differing in photoperiod sensitive allele were grown in pots under controlled and under ambient environment conditions. Flowering assessments included records of individual floret phenotype throughout the course of anthesis for the first 5 spikes per plant for each genotype. The plants under the controlled environment conditions were grown under two temperature regimes: cool and warm. The start and end of flowering for each spike and plant for each of the replicates for each genotype are given in addition to flowering duration for 2011 and 2012 (pot based ambient) and for 2012 (controlled environment).
description: Counting of individual floret phenotype using the method stated in M. Lukac et al. (2012), 'Asynchronous flowering and within-plant flowering diversity in wheat and the implications for crop resilience to heat', Annals of Botany 109 (4): 843-850. doi: 10.1093/aob/mcr308. See Related resources for link.
DOI: 10.17864/1947.48
title: Responses of faba bean (Vicia faba L.) yield parameters to heat stress treatments for five days during floral development and anthesis

description: Experiments were conducted over two years to quantify the response of faba bean (Vicia faba L.) to heat stress. Potted winter faba bean plants (cv. Wizard) were exposed to temperature treatments (18/10; 22/14; 26/18; 30/22; 34/26°C day/night) for five days during floral development and anthesis. Developmental stages of all flowers were scored prior to stress, plants were grown in exclusion from insect pollinators to prevent pollen movement between flowers, and yield was harvested at an individual pod scale, enabling effects of heat stress to be investigated at a high resolution. Susceptibility to stress differed between floral stages, flowers were most affected during initial green-bud stages. Yield and pollen germination of flowers present before stress showed threshold relationships to stress, with lethal temperatures (t50) ~28°C and ~32°C, while whole plant yield showed a linear negative relationship to stress with high plasticity in yield allocation, such that yield lost at lower nodes was partially compensated at higher nodal positions. Faba bean has many beneficial attributes for sustainable modern cropping systems but these results suggest that yield will be limited by projected climate change, necessitating the development of heat tolerant cultivars, or improved resilience by other mechanisms such as earlier flowering times.
DOI: 10.17864/1947.5
title: On the detection of pressure perturbations during the March 2015 solar eclipse - supplementary data

description: A collection of data used in the paper: On the detection of pressure perturbations during the March 2015 solar eclipse. Includes surface measurement data from the University of Reading Atmospheric Observatory and data from the University of Reading research launches from the Met Office Observatory.
DOI: 10.17864/1947.49
title: Missing orographic drag leads to climate model biases in jet streams and storm tracks - Met Office Unified Model (UM) results

description: This dataset contains the UM experiments described and used in the paper 'Missing orographic drag leads to climate model biases in jet streams and storm tracks'. State-of-the art climate models generally struggle to represent important features of the large-scale circulation. Common model deficiencies include an equatorward bias in the location of the mid-latitude westerlies and an overly zonal orientation of the North Atlantic storm track. Orography is known to strongly affect the atmospheric circulation and is notoriously difficult to represent in coarse-resolution climate models. How the representation of orography affects circulation biases in current climate models is not understood. Here, we show that the effects of switching off the parameterisation of drag from low-level orographic blocking in one climate model resemble the biases of the CMIP5 ensemble: An equatorward shift in the Southern Hemispheric jet, an overly zonal wintertime North Atlantic storm track, and an increase in the Southern Annular Mode timescale. This suggests that the representation of the extratropical circulation in coarse-resolution climate models can be improved considerably by improving the parameterisation of low-level drag. In the file listing, 'UM std' refers to a 30-year AMIP-II run of the UM at N96 resolution with standard parameters. 'UM noblock' refers to an experiment in which the low-level drag scheme is effectively switched off by setting a tuning parameter to zero, all else being equal to 'UM std'.
DOI: 10.5281/zenodo.6523903
title: Classification of Mobile Application Reviews using Deep Language Models

description: supplementary material for ASE 2022 "Classification of Mobile Application Reviews using Deep Language Models"
DOI: 10.17864/1947.220
title: Dataset associated with the article 'Exploiting Open Source 3D printer architecture for laboratory robotics to automate high-throughput time-lapse imaging for analytical microbiology'

description: This dataset is for data analysis associated with the article 'Exploiting Open Source 3D printer architecture for laboratory robotics to automate high-throughput time-lapse imaging for analytical microbiology'. It contains the raw images and Excel analysis of microtitre plates (MTP) and microcapillary film (MCF) for milk matrix experiments, POLIR quantification, and first experiment testing fluorescence on POLIR.
DOI: 10.17864/1947.227
title: ERA5 derived time series of European country-aggregate electricity demand, wind power generation and solar power generation

description: The ERA5 reanalysis data (1979-2018) has been used to calculate the three-hourly country aggregated wind and solar power generation for 28 European countries based on a distribution of wind and solar farms which is considered to be representative of the current situation (2017). In addition a corresponding daily time series of nationally aggregated electricity demand is provided. The datasets have been produced to investigate the inter-annual variability of the three weather-dependent power system components. ** Issues with the timestamps in the 3-hourly wind and solar power in this dataset were identified, and a corrected version is available at http://dx.doi.org/10.17864/1947.273. **
DOI: 10.17864/1947.223
title: Simulations with the sea ice model CICE investigating the impact of sea ice floe size distribution on seasonal Arctic sea ice retreat.

description: This dataset has been generated by implementing a power law derived sea ice floe size distribution model within the CICE sea ice model. We use this dataset within the associated paper (Bateson et al., 2019) to investigate the impact of floe size on the seasonal fragmentation and melt of Arctic sea ice. We document several findings including that the floe size distribution model has a spatially and temporally dependent impact on the sea ice cover, in particular enhancing the role of the marginal ice zone in sea ice loss. We also show a strong model sensitivity to floe size distribution parameters within limits constrained by observations. We furthermore find that the impact of waves on floe size and the sea ice cover is strongly moderated by the wave attenuation rate.
description: This dataset has been generated by implementing a power law derived sea ice floe size distribution model within the CICE sea ice model. Full details are available from Bateson et al. (2019).
description: The data is stored in netCDF format. The dataset has been compressed into a tar.gz file.
DOI: 10.17864/1947.221
title: Dataset to support lipid profiling of bacteria using liquid AP-MALDI MS

description: This dataset contains mass spectrometry raw data files, multivariate models and cross-validation reports for principle component analysis. The samples used for data acquisition were bacterial extracts from 10 species including C. jejuni, E. coli, E. faecalis, E. hirae, K. pneumoniae, L. brevis, P. aeruginosa, S. aureus, S. epidermidis and S. pyogenes. The instrumental setup used to acquire the data was an in-house built atmospheric pressure MALDI source and all bacterial extracts were analysed as liquid samples. All data presented was obtained between March 2019 to August 2019.
DOI: 10.17864/1947.234
title: Climatological summaries of Thomas Hughes’ meteorological data, for Stroud, UK (1775-1813)

description: This submission provides tables of monthly meteorological and geophysical data from Gloucestershire 1771-1813, and obtained in Stroud specifically from 1775-1813. The data provide rainfall (amounts and number of rain days), surface pressure, thunderstorm days, snow days and auroral nights. The values have been extracted from the Weather diary of Thomas Hughes, a Gloucestershire surgeon and apothecary. The original diary belongs to the Royal Meteorological Society and is kept as three bound volumes in the National Meteorological Archive.
description: Manual observation and hand-recording by diligent observer
description: Data values transcribed from original meteorological diary, with monthly values derived or calculated.
DOI: 10.17864/1947.224
title: Royal Berkshire Hospital Maternity building temperature measurements (July-August 2018).

description: This dataset contains raw temperature measurements of the internal temperatures measured during pre-heatwave conditions around the Maternity and Gynaecology building of the Royal Berkshire Hospital. The work was a pilot scheme to understand the overheating occurring within the department and what could be done to prevent it and to improve patient safety. Sensors were deployed for 2 months (July-Aug 2018). Full details can be found in Gough et al, in review: 'Assessment of overheating risk in gynaecology scanning rooms during near-heatwave conditions: a case study of Royal Berkshire Hospital in the UK', in International Journal of Environmental Research and Public Health. This data collection would not have been possible without the help of the Royal Berkshire Hospital and its staff.
description: This work would not have been possible without the permission, help and guidance of the Royal Berkshire Hospital and its staff. Tinytag instruments were deployed in various locations around level 2 of the Royal Berkshire Hosptiral (RBH) Maternity and Gynaecology building at floor and desk level in order to determine indoor temperatures during a pre-heatwave event. Temperature and humidity were measured using nine Gemini Tinytag Ultra 2 TGU-4017 temperature loggers (temperature range -40 to 85 °C). Where possible, sensors were positioned out of direct sunlight (only a problem for the Staff Offices), away from windows or heat-sources. Temperature was logged every 5 minutes, with the instruments being left unattended and data downloaded at the end of the observation period.
description: All data has been formatted to be the same and as is came off the instrument. Instruments have been calibrated against each other - this has been undertaken prior to upload.
DOI: 10.17864/1947.230
title: Dataset to support AP-MALDI native ion mobility-mass spectrometry using liquid samples

description: The dataset contains ion mobility-mass spectrometry data used for figures in the article, 'Atmospheric pressure ultraviolet laser desorption and ionization from liquid samples for native mass spectrometry', submitted for review in Summer 2019 by Hale and Cramer. Files in the root of the folder relate to figures 1 (native and denatured HEWL ions) and 2 (arrival time distribution plots for the ions shown in figure 1) in the article. Files in the 'HEWL CIU' folder were used for the CIU figures (showcasing unfolding of folded HEWL ions) in the supporting information. Data in 'Data_Sep_2019' were collected in September 2019 after initial review of the article. Data were collected for the proteins ubiquitin (Ubi), myoglobin (Myo) and concanavalin A (ConA) under native conditions. Ubiquitin and myoglobin data were also acquired under denaturing conditions for calibration of the TWIMS device.
description: Data are provided as Waters .raw mass spectrometry data files. The spreadsheet contains extracted drift time values for specific m/z values.
DOI: 10.17864/1947.231
title: Data for 'Infrared radiative performance of urban trees: spatial distribution and interspecific comparison among ten species in the UK by in-situ spectroscopy'

description: The datasets include 1) Leaf reflectance spectra of 9 common tree species (carpinus betulus, acer campestre, quercus robur, platanus x acerifolia, tilia platyphyllos, acer x freemanii, betula pendula, acer platanoides, aesculus hippocastanum) in the UK over the full wavelength range of 400 - 2500 nm. The leaf reflectance spectrum of each species was sampled from 5 to 10 individual trees with 10 leaves randomly collected from each tree. The collected leaves were measured promptly in the laboratory. Statistical mean leaf reflectance spectra and the spectral standard errors of the 9 tree species were estimated by the measuring samples within species. 2) Tree crown transflectance spectra samples of 10 tree species (sequoiadendron giganteum, carpinus betulus, acer campestre, quercus robur, platanus x acerifolia, tilia platyphyllos, acer x freemanii, betula pendula, acer platanoides, aesculus hippocastanum) in the frontal sunlit area of the trees, with a wavelength range of 350 - 1000 nm. The tree crown transflectance spectra were sampled in the sunlit side of trees by in-situ spectroscopy measurements using a vertical reference plane perpendicular to the transient solar azimuth direction. For each tree species, at least 5 trees were sampled at the crown level with visibly dense foliage (no obvious gaps in foliage and no concave crown contours). Statistical mean transflectance spectra of multiple tree species were determined in terms of intraspecific transflectance spectra in the frontal sunlit area, by converting transflectance spectra samples to the equivalent spectra at a solar altitude of 45° (benchmark condition). 3) Interspecific comparison of radiative performance levels across 10 species on sunny days determined in the benchmark conditions of 45° solar altitude. The statistical mean transflectance spectra and the standard mean errors of the 10 tree species implied interspecific difference of the radiative performance levels.
DOI: 10.17864/1947.222
title: Pro-L*: probabilistic hourly L* values, with associated McIlwain Lm, magnetic field intensity B, and Cartesian coordinates for 7 global magnetic field models in the Northern Hemisphere in the period 2006-2016

description: In radiation belt physics radial distance is often thought of by L*, which approximates the distance from the Earth’s centre to an equatorial point (if we were to assume a dipole magnetic field). Global magnetic field models allow a subset of locations on the ground to be mapped along field lines to a location in space and transformed into L*, provided that location maps to a closed drift path. This allows observations from ground, or low-altitude space-based platforms to be mapped into space in order to inform radiation belt modelling. In current modelling efforts a decision must therefore be made for the global magnetic field model to implement. Many data-based magnetic field models exist; however these models can significantly disagree on mapped L* values for a single point on the ground, during both quiet times and storms. We present a state of the art probabilistic L* mapping tool, Pro-L*, which produces probability distributions for L* corresponding to a given ground location. Pro-L* is an extensive dataset comprising 11 years worth of hourly L* values for 7 global magnetic field models, spanning a high resolution grid in the Northern Hemisphere where ground instruments for radiation belt studies are mostly located. Accompanying each L* approximation, the McIlwain L, magnetic field amplitude and Cartesian location are also stored. Data was generated using the International Radiation Belt Environment Modelling library (IRBEM-Lib), a collection of FORTRAN 77 processes for radiation belt modelling which compute magnetic coordinates and drift shells using various external magnetic field models, hosted in the Python package Spacepy. The data is formatted in yearly compressed csv files, with each row a particular hour containing all of the mentioned variables for each magnetic field model, the corresponding grid points’ magnetic latitude, magnetic longitude, and magnetic local time (MLT). Therefore, each hour index appears for each grid point.
DOI: 10.48370/ofd/m1e0w9/pphlms
title: IBL_coll_2385_ApodemusFlavicollis_1947_scan.jpg

description: :unav
DOI: 10.17864/1947.229
title: A new multi-variable benchmark for Last Glacial Maximum climate simulations

description: Reconstruction of climate anomalies for the Last Glacial Maximum (LGM, ca 21,000 years ago), made by combining pollen based reconstructions (from Bartlein et al. 2011) and averaged outputs of LGM simulations from the 3rd round of the Palaeoclimate Model Intercomparison Project (PMIP, Braconnot et al. 2011), under a variational data assimilation technique. This reconstruction is designed to be used for data-model comparison, specifically against the results of PMIP4. The dataset consists of 6 variables: moisture index (the ratio precipitation and equilibrium evapotranspiration), mean annual precipitation (mm), mean annual temperature (degrees C), mean temperature of the coldest month (degrees C), mean temperature of the warmest month (degrees C), growing degree days above 5 degrees C (day degrees C). The standard deviation of these variables is also given. This dataset supersedes the version published at http://dx.doi.org/10.17864/1947.206, where the spatial and temporal correlations used with the PMIP data were based on a Gaussian function, instead of a Bessel function.
description: This dataset is made by combining site-based pollen reconstructions with aggregated outputs of PMIP3. The possible climates are varied and the most likely climate is found under a 3D-Variational data assimilation scheme. The uncertainty from this process is then used to screen out areas where the pollen reconstructions have had a minimal effect. By using a vegetation model, the effect of changing CO_2 concentrations on pollen reconstructions is also accounted for. The error of the resulting reconstruction is also calculated and given as 1 standard deviation from the variables. The individual fields are: grid cell centre latitude grid cell centre longitude moisture index mean annual precipitation (mm) mean annual temperature (degrees C) mean temperature of the coldest month (degrees C) mean temperature of the warmest month (degrees C) growing degree days above 5 degrees C (days degrees C) moisture index standard deviation mean annual precipitation standard deviation (mm) mean annual temperature standard deviation (degrees C) mean temperature of the coldest month standard deviation (degrees C) mean temperature of the warmest month standard deviation (degrees C) growing degree days above 5 degrees C standard deviation (days degrees C).
DOI: 10.48370/ofd/m1e0w9/23y7qv
title: IBL_coll_2385_ApodemusFlavicollis_1947_scan_ct.swf

description: :unav