cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26008/1912/bco-dmo.640007.2
title: Visual substrate classification along transects from the nearshore reefs in Guam during 2014 (Reef Resilience in Guam project)

description: Visual survey of substrate types along transects 10 m x 5 contiguous segments. Substrates were  classified along the transects at 50 cm intervals from the nearshore reefs in Guam during 2014.
DOI: 10.26008/1912/bco-dmo.836164.1
title: Growth rate of Peyssonnelid Algal Crusts on terracotta settlement tiles at five sites across Lameshur Bay, St. John, USVI from 2009 onward

description: Growth rate of Peyssonnelid Algal Crusts was measured using terracotta settlement tiles at five sites across Lameshur Bay, St. John, USVI. Unglazed terracotta tiles (15 × 15 × 1 cm) originally were deployed to measure coral recruitment, and photographs of the tiles were re-purposed to provide an additional measure of the planar growth of PAC. Years for which photographs of settlement tiles were available to be analyzed for growth rate include 2009, 2011-2012, and 2014-2019.
DOI: 10.26008/1912/bco-dmo.639865.1
title: List of coral species with codes from nearshore reefs in Guam in 2014 (Reef Resilience in Guam project)

description: List of coral species with codes surveyed at stations from nearshore reefs in Guam in 2014.
DOI: 10.26008/1912/bco-dmo.639879.1
title: Coral health survey from the nearshore reefs in Guam during 2014 (Reef Resilience in Guam project)

description: Coral health survey from the nearshore reefs in Guam during 2014.
DOI: 10.26008/1912/bco-dmo.639986.2
title: Underwater fluorescence on nearshore reefs in Guam during 2014 (Reef Resilience in Guam project)

description: Maximum excitation pressure of Symbiodinium assemblages was assessed as an indicator for holobiont photosynthetic performance of Pocillopora damicornis in shallow (1-2m), back reef and P. eydouxi in deeper fore reef (&gt;3m).
DOI: 10.26008/1912/bco-dmo.640026.2
title: Temperature and light intensity at 7 locations from the nearshore reefs in Guam during 2014 (Reef Resilience in Guam project)

description: Temperature and light intensity data from seven locations from the nearshore reefs in Guam, January to August 2014.
DOI: 10.26008/1912/bco-dmo.838914.1
title: Nitrate N and O isotopes from the GP12 (&quot;PANDORA&quot;) cruise in the South-West Pacific and Solomon Sea from June to August 2012 carried out as part of the international GEOTRACES program

description: Nitrate N and O isotopes from the GP12 (&quot;PANDORA&quot;) cruise in the South-West Pacific and Solomon Sea from June to August 2012 carried out as part of the international GEOTRACES program. This dataset was supported by NSF OCE-1060947, NSF OCE-1736652, NSF OCE-0960802, and the Grand Challenges Program of Princeton University.
DOI: 10.26008/1912/bco-dmo.710274.2
title: Oyster density in intertidal quadrats in Pamlico Sound, 2014-2015 (Estuarine Metapop Dynamics project)

description: Oyster density data on natural intertidal oyster reefs and hardened shorelines in Pamlico Sound, North Carolina. Reef sites from the ground-truthing survey that met a minimum density criterion (10 live oysters per m2) were revisited and continuously sampled in June, August, and October in 2014 and 2015.
DOI: 10.26008/1912/bco-dmo.710314.2
title: Intertidal oyster size frequency data from Pamlico Sound oyster reefs and hardened shoreline structures, North Carolina from 2014-2015 (EstuarineMetaDyn project)

description: Oyster size-frequency data on natural intertidal oyster reefs and hardened shorelines in Pamlico Sound, North Carolina. Reef sites from the ground-truthing survey that met a minimum density criterion (10 live oysters per m2) were revisited and continuously sampled in June, August, and October in 2014 and 2015.
DOI: 10.26008/1912/bco-dmo.816379.1
title: Microbial 16S OTU count data from staghorn coral health experiments with treatment with and without antibiotics

description: This dataset reports the number of reads of microbial 16S OTU's from a priority experiment with staghorn coral treated with and without antibiotics.
DOI: 10.26008/1912/bco-dmo.816316.1
title: Staghorn coral health following experimental treatment with and without antibiotics

description: This dataset reports results from a priority experiment with staghorn corals fragments from 10 genotypes. Antibiotic-treated and untreated tanks were sampled for DNA and exposed to disease or healthy slurries at two time points. Corals that developed disease were sampled and sacrificed. Health status of the coral fragments was scored every 12hrs.
DOI: 10.26008/1912/bco-dmo.816367.1
title: Microbial 16S OTU annotation information from staghorn coral health experiments with treatment with and without antibiotics

description: This dataset reports assigned taxonomy of microbial 16S OTU's from a priority experiment with staghorn coral treated with and without antibiotics.
DOI: 10.26008/1912/bco-dmo.780155.1
title: Fatty acid profiles by biovolume of replicate populations of Thalassiosira pseudonana, selected at 16 and 31C for ~500 generations and assayed at 4 temperatures

description: Fatty acid profiles by biovolume of replicate populations of Thalassiosira pseudonana, selected at 16 and 31C for ~500 generations and assayed at 4 temperatures.
DOI: 10.26008/1912/bco-dmo.780178.1
title: Fatty acid profiles per cell of replicate populations of Thalassiosira pseudonana, selected at 16 and 31C for ~500 generations and assayed at 4 temperatures

description: Fatty acid profiles per cell of replicate populations of Thalassiosira pseudonana, selected at 16 and 31C for ~500 generations and assayed at 4 temperatures
DOI: 10.26008/1912/bco-dmo.835227.1
title: Carbonate chemistry in Mission Aransas Estuary from May 2014 to Feb 2017 and Dec 2018 to Feb 2020

description: The Ecosystem Science and Modeling lab has been collecting water samples from five stations in the Mission-Aransas Estuary (MAE, Northwest Gulf of Mexico, Texas coast) for carbonate system characterization on a monthly to twice monthly basis since May 2014. This dataset includes temperature, salinity, dissolved inorganic carbon (DIC), total alkalinity (TA), calcium, and pH measurements from surface and bottom water samples in MAE from May 2014 – Feb 2017 and Dec 2018 – Feb 2020. Additional data for this estuary to fill in the Feb 2017 – Dec 2018 gap are also archived with BCO-DMO (http://www.bco-dmo.org/dataset/784673, doi:10.1575/1912/bco-dmo.784673.1).
DOI: 10.26008/1912/bco-dmo.710053.1
title: Mass flux, organic carbon, organic nitrogen, and biogenic silica flux data from sediment traps in the Ross Sea, 2001-2006 (IVARS project)

description: Mass flux, organic carbon, organic nitrogen, and biogenic silica flux data from sediment traps in the Ross Sea, 2001-2006.
DOI: 10.26008/1912/bco-dmo.710112.1
title: Bottle data including phosphate, nitrate, total nitrite and nitrate, ammonium, silicate, chlorophyll, particulate organic carbon and nitrogen (POC, PON), and biogenic silica from multiple cruises to the southern Ross Sea, 2001-2006 (IVARS project)

description: The IVARS project was a field effort to document the interannual variations in surface chemical and biological properties in the southern Ross Sea.  In involved placed sediment traps and moorings at two sites, and completing hydrographic analyses between the two locations.
DOI: 10.26008/1912/bco-dmo.535462.1
title: Settling and mortality measurements of brooded coral larvae at high and ambient temperature and pCO2, Taiwan, March 2011 (MCR LTER project, Climate_Coral_Larvae project)

description: The physiological development of brooded larvae from the pocilloporid corals Pocillopora damicornis in southern Taiwan under elevated temperature and pCO2 was examined. These data include settling and mortality rates of brooded coral larvae at high and ambient temperature and pCO2 conducted in March 2011. These data were published in Cumbo et al, JEMBE, 2013.
DOI: 10.26008/1912/bco-dmo.661175.1
title: Site code key for kelp forest community data collected along the coast of Monterey and Carmel, CA from 1999-2015 (Kelp Forest Resilience project)

description: Site code key for the kelp forest community percent cover and density datasets collected from 1999 to 2015 along the coast of Monterey and Carmel, California.
DOI: 10.26008/1912/bco-dmo.712843.1
title: Locations of fish surveys in the Monterey and Carmel nearshore from 1999-2015 (Larval Dispersal in Kelp Rockfish project)

description: This dataset contains locations for fish surveys conducted for the project on Larval Dispersal in Kelp Rockfish.
DOI: 10.26008/1912/bco-dmo.684453.1
title: Species, sample date, location individual size and sample disposition of juvenile fish surveyed near Carmel and Monterey Bays, CA, 2013-2016 (Larval Dispersal in Kelp Rockfish project)

description: This dataset contains sampling information for samples collected for genetic parentage analysis from juvenile rockfish – species, sample date, location individual size and sample disposition.
DOI: 10.26008/1912/bco-dmo.684484.1
title: Survey of fish species, number and size from transects near Carmel and Monterey Bays, CA, 1999-2015 (Larval Dispersal in Kelp Rockfish project)

description: This dataset contains fish survey component of the project. Fish sampling consists of recording the number and size of all non-cryptic fishes on &quot;transects&quot;. Ancillary data include the GPS location of each area, underwater visibility on the bottom, water temperature, and sea state (surge).
DOI: 10.26008/1912/bco-dmo.684426.2
title: Species, sample date, location individual size and sample disposition of adult fish surveyed near Carmel and Monterey Bays, CA, 2013-2016 (Larval Dispersal in Kelp Rockfish project)

description: This dataset contains sampling information for samples collected for genetic parentage analysis from adult rockfish – species, sample date, location, individual size, and sample disposition.
DOI: 10.26008/1912/bco-dmo.684512.1
title: Fish species code key for data collected along the shore of Monterey and Carmel from 1999-2015 (Larval Dispersal in Kelp Rockfish project)

description: This dataset contains the species code key for the adult and juvenile fish lengths and the fish survey datasets collected from 1999 to 2015 along the coast of Monterey and Carmel, California.
DOI: 10.26008/1912/bco-dmo.838088.1
title: Catalog numbers, GenBank accession numbers, and key details for specimens collected during cruises AT37-13 (2017), AT42-03 (2018), and FK190106 (2019) and vouchered in the Scripps Institution of Oceanography Benthic Invertebrate Collection

description: This dataset includes catalog numbers, GenBank accession numbers, and key details for specimens collected during cruises AT37-13 (2017), AT42-03 (2018), and FK190106 (2019) and vouchered in the Scripps Institution of Oceanography Benthic Invertebrate Collection.
DOI: 10.26008/1912/bco-dmo.640238.1
title: Acropora cervicornis population data during bleaching events from shoreside Florida_Coral_Reefs Coral_Bleaching_FRRP in the Florida Reef Tract from 2014-2015 (EMUCoReS project)

description: Regional Acropora cervicornis size, mortality, and health condition data during summer bleaching events in 2014 and 2015.
DOI: 10.26008/1912/bco-dmo.699988.1
title: Water temperatures from 3 regions of the Florida Reef Tract April 2014-April 2016 (EMUCoReS project)

description: This dataset includes temperature data from three sites in the Florida Reef Tract, one each in the upper, middle and lower Keys.
DOI: 10.26008/1912/bco-dmo.640108.1
title: Acropora cervicornis fragment growth during bleaching events in the Florida Reef Tract from 2014-2015 (EMUCoReS project)

description: Growth of Acropora cervicornis fragments were measured before and after three months during the summer bleaching events of 2014 and 2015.
DOI: 10.26008/1912/bco-dmo.640227.1
title: Coral nursery water temperature during bleaching events in the Florida Reef Tract from 2014-2015 (EMUCoReS project)

description: Coral nursery (&quot;the bowl&quot;) water temperatures during summer bleaching events in 2014 and 2015.
DOI: 10.26008/1912/bco-dmo.751028.1
title: Lipid content describing the behavior of coral larvae in high pCO2 within shallow tropical reefs in Okinawa, Japan from 2016-07 to 2016-08

description: Twelve colonies of Pocillopora damicornis (Linnaeus 1758) were collected in July and August 2016 from ~ 1-m depth on a patch reef on the northwest shore of Okinawa (26°40’18.24” N, 127°53’4.78” E). Colonies were collected prior to expected larval release in Okinawa in July and August (S. Harii, unpublished data on the study site), with peak release occurring ~ 7 days after the new moon.

Following collection, colonies were transferred to Sesoko Station, part of the Tropical Biosphere Research Center University of the Ryukyus, where they were incubated outdoors in individual containers exposed to natural irradiance in flow-through seawater. Ambient seawater was pumped at 3.0 L min-1 (AC Flowmeter, Tokyo Keiso Co., Japan) from 4–5 m depth and stored in two 10 L reservoirs. Air was bubbled constantly in to the reservoirs at 3.0 L min-1 to maintain ambient seawater pCO2 (i.e., the control conditions). Seawater temperature was measured hourly at 1–2-m depth near the collection site prior to, and during, the experiment (HOBO Pro v2, Onset Computer Corporation, USA), and was 29.9 ± 0.2°C (mean ± SE, n = 45 days), with a daily minimum of 28.3°C and daily maximum of 31.8°C (R. Prasetia & S. Harii, unpublished data) that reflects summertime diurnal warming in this location. Temperature in the containers holding the corals was maintained within this range during the experiment (29.8 ± &lt; 0.2°C, mean ± SE, n = 31) using a chiller (ZR-130E, Zensui, Japan).

Planulae released from P. damicornis during the first quarter moon of July and August were collected at ~ 05:00 hrs following their release at ~ 03:00 hrs, using containers lined with 110 µm plankton mesh. As larvae from P. damicornis are physiologically dissimilar among days of release, larvae were collected from the inferred day of peak release and pooled among colonies releasing larvae on this day. Larvae from July and August were used to test the effects of pCO2 (two levels) and depths (two levels) on larval behavior, and the experiment was conducted in two parts. The first part (July 2016) tested the effects of two pCO2 regimes on larval behavior with the tubes positioned with their upper opening adjacent to the air-water interface of the seawater (hereafter “shallow” tubes), and the second part (August 2016) tested the effects of the same two pCO2 regimes on larval behavior with the tubes positioned with their upper opening ~3–4 m below the surface (hereafter “deep” tubes).
DOI: 10.26008/1912/bco-dmo.817797.1
title: Sediment geochemistry from push cores collected during HOV Alvin dives during the R/V Atlantis cruise AT42-05 in Guaymas Basin, Gulf of California (27 00.00 N, -111 20.00 W) in November 2018

description: Sediment geochemistry from push cores obtained using the human-occupied deep-diving vehicle (HOV) Alvin dives 4991-5000 during the R/V Atlantis cruise AT42-05 in Guaymas Basin, Gulf of California (27 00.00 N, -111 20.00 W) in November 2018.
DOI: 10.26008/1912/bco-dmo.835533.1
title: Dissolved REE concentrations from the US GEOTRACES Arctic cruise (GN01, HLY1502) from August to October 2015

description: Dissolved REE concentrations from the US GEOTRACES Arctic cruise (GN01, HLY1502) from August to October 2015. These samples were analyzed at Lamont-Doherty Earth Observatory (LDEO).
DOI: 10.26008/1912/bco-dmo.751232.1
title: Developmental morphology data of mussel larvae grown in static and fluctuating pH treatments

description: Mussel larvae of Mytilus galloprovincialis were grown in static and fluctuating pH treatments in a flow-through seawater system. pH was modified with CO2 gas. Larvae were collected on day 3 (D-veliger stage) and staged for developmental success and morphology, using microscope photography.
DOI: 10.26008/1912/bco-dmo.751258.1
title: Biological data of mussel larvae treated with fluorescent dyes and grown in two pH treatments.

description: Mussel larvae of Mytilus galloprovincialis were grown in two pH treatments (pH 8.1 and 7.4). Larvae were collected for biological measurements of shell field development and calcification at 35 hours post-fertilization (hpf, trochophore stage). Calcein dye was added to the cultures prior to the start of calcification. Calcofluor is live dye and so was added to sampled larvae at 35 hpf for immediate imaging. Confocal microscopy was used for 3D imaging of larvae. Images were processed in ImageJ. Shell field area was determined as the area stained by calcofluor, on one valve. Calcification area was determined as the area stained by calcein, on one valve.
DOI: 10.26008/1912/bco-dmo.837617.1
title: Pyrosome total colony lengths from samples collected off the Oregon Coast on three cruises aboard NOAA Ship Bell M. Shimada during 2018

description: Pyrosome total colony lengths from samples collected off the Oregon Coast on three cruises aboard NOAA Ship Bell M. Shimada during 2018.
DOI: 10.26008/1912/bco-dmo.837640.1
title: Pyrosome gut pigment contents from samples collected off the Oregon Coast on two cruises aboard NOAA Ship Bell M. Shimada during 2018

description: Pyrosome gut pigment contents from samples collected off the Oregon Coast on two cruises aboard NOAA Ship Bell M. Shimada during 2018.
DOI: 10.26008/1912/bco-dmo.837652.1
title: Pyrosome abundances from samples collected off the Oregon Coast on three cruises aboard NOAA Ship Bell M. Shimada during 2018

description: Pyrosome abundances from samples collected off the Oregon Coast on three cruises aboard NOAA Ship Bell M. Shimada during 2018.
DOI: 10.26008/1912/bco-dmo.715706.2
title: Inventory of push cores taken on Alvin dives on RV/Atlantis cruise AT37-13 and AT42-03 at methane seeps off the Pacific coast of Costa Rica (Costa Rica Seeps project)

description: This dataset is an inventory of push corer samples collected by HOV/Alvin on the RV/Atlantis cruises AT/37-13 and AT42-03 to the Costa Rica Margin (Mound 12, Quepos landslide, Jaco Scar) during May/June 2017 and Oct./Nov 2018. It includes a description of the sampling locations and information on the types of analyses that were to be performed on the samples.
DOI: 10.26008/1912/bco-dmo.837256.1
title: CTD data collected off the Oregon Coast on three cruises aboard NOAA Ship Bell M. Shimada during 2018

description: CTD data collected off the Oregon Coast on three cruises aboard NOAA Ship Bell M. Shimada during 2018.
DOI: 10.26008/1912/bco-dmo.837587.1
title: Chlorophyll and phaeopigment data collected off the Oregon Coast on two cruises aboard NOAA Ship Bell M. Shimada during 2018

description: Chlorophyll and phaeopigment data collected off the Oregon Coast on two cruises aboard NOAA Ship Bell M. Shimada during 2018.
DOI: 10.26008/1912/bco-dmo.716480.1
title: Iodine 129 levels from R/V Ka`imikai-O-Kanaloa KOK1108 from June 2011 (Fukushima Radionuclide Levels project)

description: Iodine 129 data collected using paired Niskin-CTD rosette from R/V Ka`imikai-O-Kanaloa KOK1108 in June 2011
DOI: 10.26008/1912/bco-dmo.836975.1
title: Skeletal density for crustose coralline algae reared in natural and experimental temperature and pCO2 conditions

description: This dataset contains skeletal density for crustose coralline algae reared in natural and experimental conditions (factorially crossed temperature (~6.5, 8.5, and 12.5 °C) and pCO2 (~350, 490, 890, and 3200 µatm)). Skeletal density was quantified using a micro-CT scanner.
DOI: 10.26008/1912/bco-dmo.751282.1
title: Shell length data of mussel larvae grown in static and fluctuating pH treatments

description: Mussel larvae of Mytilus galloprovincialis were grown in static and fluctuating pH treatments in a flow-through seawater system. pH was modified with CO2 gas. D-veliger larvae were collected for shell length measurements on various days per experiment. Shell length was determined using microscope photography and analysis in ImageJ.
DOI: 10.26008/1912/bco-dmo.836954.1
title: Carbonate chemistry and CTD data collected along a North Pacific transect between Hawaii and Alaska on R/V Kilo Moana cruise KM1712 in August 2017

description: This dataset includes carbonate chemistry and general measurements from CTD casts at 6 stations between Hawaii and Alaska. Data were collected in August 2017 onboard R/V Kilo Moana.
DOI: 10.26008/1912/bco-dmo.712293.1
title: Copepods Parvocalanus crassirostris and Bestiolina similis naupliar ingestion and clearance rates on natural prey assemblages from Kaneohe Bay, Oahu, 2013 (MEPS 2017) (EAGER: Copepod nauplii project)

description: This dataset reports naupliar prey ingestion, clearance rates, and biomass ingestion rates by two species of calanoid copepods, Parvocalanus crassirostris and Bestiolina similis. These data are published in Jungbluth et al., (2017) and are the result of M. Jungbluth's Ph.D. thesis work.
DOI: 10.26008/1912/bco-dmo.712626.1
title: Initial prey abundances for copepod grazing experiments in the Kaneohe Bay, HI, May-June 2013 (MEPS 2017) (EAGER: Copepod nauplii project)

description: This dataset reports initial abundance and biomass of size classes of prey items as measured by Coulter Counter, flow cytometer, inverted and epi-fluorescence microscopes and as chlorophyll concentration. These data are published in MEPS (2017) and are the result of M. Jungbluth's Ph.D. thesis work.
DOI: 10.26008/1912/bco-dmo.752550.1
title: Histological analysis of Caribbean acroporid corals collected in September 2014 before and after exposure to thermal stress in St. Thomas, U.S. Virgin Islands.

description: Histological analysis of Caribbean acroporid corals collected in September 2014 before and after exposure to thermal stress in St. Thomas, U.S. Virgin Islands.
DOI: 10.26008/1912/bco-dmo.637695.1
title: Field conditions during grazing experiments in Kaneohe Bay, HI during 2012-2013 (EAGER: Copepod nauplii project)

description: Environmental conditions in the field during each paired naupliar grazing and community grazing dilution experiment. Copepod nauplii can be a dominant component of the microzooplankton, and are present year-round in subtropical ecosystems. However, little is known about species-level differences in grazing rates and trophic impacts across the naupliar assemblage. Our goals were to measure ingestion by two species of mid-stage (N3-N4) copepod nauplii in a subtropical embayment, evaluate species’ differences in prey preferences, and estimate the trophic impact of naupliar grazing by each species.
DOI: 10.26008/1912/bco-dmo.712344.1
title: Initial field conditions at Kane‘ohe Bay, Oahu, Hawaii and abundances of Parvocalanus crassirostris and Bestilina similis nauplii, May/June 2013 (EAGER: Copepod nauplii project)

description: This dataset reports initial community conditions in Kane'ohe Bay including temperature, salinity, chlorophyll and naupliar abundance of two species of calanoid copepods, Parvocalanus crassirostris and Bestiolina similis as measured by microscopic counts and qPCR. These data are published in MEPS (2017) and are the result of M. Jungbluth's Ph.D. thesis work.
DOI: 10.26008/1912/bco-dmo.714278.1
title: Initial prey abundances for copepod grazing experiments in the Kaneohe Bay, HI, March-April 2015 (JEMBE 2017) (EAGER: Copepod nauplii project)

description: This dataset reports initial abundance and biomass of size classes of prey items as measured by Coulter Counter. These data are published in JEMBE (2017) and are the result of M. Jungbluth's Ph.D. thesis work.
DOI: 10.26008/1912/bco-dmo.714300.1
title: Copepods Parvocalanus crassirostris naupliar ingestion and clearance rates on natural prey assemblages from Kaneohe Bay, Oahu, 2015 (JEMBE 2017) (EAGER: Copepod nauplii project)

description: This dataset reports ingestion and clearance rates of 5 size classes of prey items as measured by Coulter Counter. These data are published in JEMBE (2017) and are the result of M. Jungbluth's Ph.D. thesis work.
DOI: 10.26008/1912/bco-dmo.753430.1
title: Nearshore pH and temperature at mooring sites in McMurdo Sound, Antarctica, Overwinter 2011-2012

description: false