cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21516582
title: The palynology of the Permian succession in the CSDP-2 Well, South Yellow Sea, China

description: The fully cored CSDP-2 Well, drilled in the central uplift region of the South Yellow Sea, China, provides indispensable and very significant research opportunities to understand the evolution of life, paleoclimate, paleogeography, and tectonics during the Permian in the South Yellow Sea area of the Yangtze paleoblock. We here analyze 118 samples from 893.7 to 1798.8 m depth of the CSDP-2 borehole core and recognize three Permian palynological assemblages, <i>Laevigatosporites minimus</i> – <i>Florinites florini</i> (MF) for the Kungurian mid-lower Qixia Formation, <i>Crucisaccites quadratoides</i> – <i>Limitisporites rhombicorpus</i> (QR) for the Capitanian lower Longtan Formation and <i>Macrotoispora media</i> – <i>Anticapipollis tornatilis</i> (MT) for the Wuchiapingian upper Longtan Formation, in an ascending order. These palynological assemblages indicate a warm and semi-humid rainforest paleoenvironment and a drying tendency of the paleoclimate. The present study area belongs to the Yangtze paleoblock in paleogeography and is a part of the Cathaysia flora based on mega-plant fossil records. However, our palynological assemblages show similarities to those of both South China and North China subzones and, especially, their pollen contents with arid coniferous affinities highly similar to those in the north part of the South China subzone. The presence of conifers might suggest a more arid climate in the North China subzone had started to affect the Yellow Sea area in the Lopingian (Permian).
DOI: 10.6084/m9.figshare.21516362
title: Collapse Resistance Model and Deformation Mechanism of Shear Wall Replacement

description: Abstract Structural elements can be damaged or defective due to man-made and natural disasters, which will result in structural resistance below the design value. Component replacement can effectively improve the safety of the structure and does not affect its later use. However, this construction process must dismantle defective components. If the process is not properly operated, it will cause progressive collapse of the structure. There are few studies on progressive collapse resistance based on field tests. In this paper, the alternate load path method is used to study the deformation mechanism of reinforced concrete shear wall structures when partial members fail. The maximum vertical displacement and strain of the beam end near the failure walls are obtained, and load transfer laws are analyzed. Based on the component replacement construction of a high-rise shear wall structure, the progressive collapse resistance mechanism of the shear wall structure is verified, which provides theoretical guidance for component replacement construction.
DOI: 10.6084/m9.figshare.5787723
title: DNA barcoding for species identification in deep-sea clams (Mollusca: Bivalvia: Vesicomyidae)

description: Deep-sea clams (Bivalvia: Vesicomyidae) have been found in reduced environments over the world oceans, but taxonomy of this group remains confusing at species and supraspecific levels due to their high-morphological similarity and plasticity. In the present study, we collected mitochondrial COI sequences to evaluate the utility of DNA barcoding on identifying vesicomyid species. COI dataset identified 56 well-supported putative species/operational taxonomic units (OTUs), approximately covering half of the extant vesicomyid species. One species (OTU2) was first detected, and may represent a new species. Average distances between species ranged from 1.65 to 29.64%, generally higher than average intraspecific distances (0–1.41%) when excluding <i>Pliocardia</i> sp.10 cf. <i>venusta</i> (average intraspecific distance 1.91%). Local barcoding gap existed in 33 of the 35 species when comparing distances of maximum interspecific and minimum interspecific distances with two exceptions (<i>Abyssogena southwardae</i> and <i>Calyptogena rectimargo-starobogatovi</i>). The barcode index number (BIN) system determined 41 of the 56 species/OTUs, each with a unique BIN, indicating their validity. Three species were found to have two BINs, together with their high level of intraspecific variation, implying cryptic diversity within them. Although fewer 16 S sequences were collected, similar results were obtained. Nineteen putative species were determined and no overlap observed between intra- and inter-specific variation. Implications of DNA barcoding for the Vesicomyidae taxonomy were then discussed. Findings of this study will provide important evidence for taxonomic revision in this problematic clam group, and accelerate the discovery of new vesicomyid species in the future.
DOI: 10.17632/7wnvb2y8cm.1
title: Conjunto de dados Importância do coping religioso espiritual no diagnóstico e tratamento da doença renal

description: pesquisa exploratória, de abordagem quantitativa, realizado com indivíduos portadores de doença renal, em tratamento hemodialítico, sendo 100 participantes no total.
DOI: 10.6084/m9.figshare.14700563.v1
title: Additional file 1 of 3D printing guide plate for accurate hemicortical bone tumor resection in metaphysis of distal femoral: a technical note

description: Additional file 1. Case 1. Case 2. Case 3. Case 4. Case 5 po 3 months.
DOI: 10.24403/jp.1329267
title: Friedrich August Ludwig von Burgsdorf 1747-1802, thüringisch-preußischer Forstmann, Forstpädagoge und Forstwissenschaftler. Kritische Anmerkungen zu seiner Biographie / S. Jost Casper
DOI: 10.17632/2w87n5fznt.2
title: Built environment and Physical Activity in adolescents: use of the Kernel Density Estimation and the Walkability Index

description: Was analyzed the association between the distribution density of places for physical activity (PA), walkability and PA of Brazilian adolescents. Was conducted analyses of the Kernel Density Estimation (KDE) and the Binary Logistic Regression to verify the association between the PA with the KDE and with the walkability. Was observed that in 1.200 and 1.600 meters radius adolescents from the quartile 3 and quartile 4 had greater chances of being active, as well as for the walkability in quartile 4. In conclusion, the adolescents that live in locations with better values of KDE and walkability values were more active.
DOI: 10.17632/2w87n5fznt.1
title: Built environment and Physical Activity in adolescents: use of the Kernel Density Estimation and the Walkability Index

description: Was analyzed the association between the distribution density of places for physical activity (PA), walkability and PA of Brazilian adolescents. Was conducted analyses of the Kernel Density Estimation (KDE) and the Binary Logistic Regression to verify the association between the PA with the KDE and with the walkability. Was observed that in 1.200 and 1.600 meters radius adolescents from the quartile 3 and quartile 4 had greater chances of being active, as well as for the walkability in quartile 4. In conclusion, the adolescents that live in locations with better values of KDE and walkability values were more active.
DOI: 10.17632/2w87n5fznt.3
title: Built environment and Physical Activity in adolescents: use of the Kernel Density Estimation and the Walkability Index

description: Was analyzed the association between the distribution density of places for physical activity (PA), walkability and PA of Brazilian adolescents. Was conducted analyses of the Kernel Density Estimation (KDE) and the Binary Logistic Regression to verify the association between the PA with the KDE and with the walkability. Was observed that in 1.200 and 1.600 meters radius adolescents from the quartile 3 and quartile 4 had greater chances of being active, as well as for the walkability in quartile 4. In conclusion, the adolescents that live in locations with better values of KDE and walkability values were more active.
DOI: 10.6084/m9.figshare.21516371
title: Ligustrazine suppresses platelet aggregation through inhibiting the activities of calcium sensors

description: Abstract Ligustrazine is widely used for the treatment of cardiovascular diseases in traditional Chinese medication. It has been reported that Ligustrazine decreases the concentration of intracellular calcium ions (Ca2+); however, the underlying mechanism remains unknown. In the present study, the effect of Ligustrazine on adenosine diphosphate (ADP)-induced platelet aggregation was evaluated using a turbidimetric approach. The changes in concentration of intracellular Ca2+ stimulated by ADP was measured using fluo-4, a fluorescent Ca2+ indicator dye. The mRNA expression of stromal interaction molecule l (STIM1) and Orai1, calcium sensor, was determined using real-time PCR. In addition, the protein expression of STIM1, Orai1, and serum/glucocorticoid-regulated protein kinase 1 (SGK1) was determined using Western blot analysis. The data demonstrated that Ligustrazine significantly suppressed platelet aggregation in a dose-dependent manner and reduced the concentration of intracellular Ca2+ triggered by ADP. Our data showed that Ligustrazine treatment inhibited the expression of STIM1 and Orai1 induced by ADP at both mRNA and protein levels, and suppressed the protein expression of SGK1. Taken together, our data indicated that Ligustrazine suppressed platelet aggregation by partly inhibiting the activities of calcium sensors, thereby suggesting that Ligustrazine may be a promising candidate for the treatment of platelet aggregation.
DOI: 10.6084/m9.figshare.14176226.v1
title: Additional file 3 of APE1 may influence CD4+ naïve T cells on recurrence free survival in early stage NSCLC

description: Additional file 3. APE1 expression and immune cell population in GEO database.
DOI: 10.6084/m9.figshare.21516371.v1
title: Ligustrazine suppresses platelet aggregation through inhibiting the activities of calcium sensors

description: Abstract Ligustrazine is widely used for the treatment of cardiovascular diseases in traditional Chinese medication. It has been reported that Ligustrazine decreases the concentration of intracellular calcium ions (Ca2+); however, the underlying mechanism remains unknown. In the present study, the effect of Ligustrazine on adenosine diphosphate (ADP)-induced platelet aggregation was evaluated using a turbidimetric approach. The changes in concentration of intracellular Ca2+ stimulated by ADP was measured using fluo-4, a fluorescent Ca2+ indicator dye. The mRNA expression of stromal interaction molecule l (STIM1) and Orai1, calcium sensor, was determined using real-time PCR. In addition, the protein expression of STIM1, Orai1, and serum/glucocorticoid-regulated protein kinase 1 (SGK1) was determined using Western blot analysis. The data demonstrated that Ligustrazine significantly suppressed platelet aggregation in a dose-dependent manner and reduced the concentration of intracellular Ca2+ triggered by ADP. Our data showed that Ligustrazine treatment inhibited the expression of STIM1 and Orai1 induced by ADP at both mRNA and protein levels, and suppressed the protein expression of SGK1. Taken together, our data indicated that Ligustrazine suppressed platelet aggregation by partly inhibiting the activities of calcium sensors, thereby suggesting that Ligustrazine may be a promising candidate for the treatment of platelet aggregation.
DOI: 10.6084/m9.figshare.14176226
title: Additional file 3 of APE1 may influence CD4+ naïve T cells on recurrence free survival in early stage NSCLC

description: Additional file 3. APE1 expression and immune cell population in GEO database.
DOI: 10.6084/m9.figshare.22041201.v2
title: Intraday Periodic Volatility Curves

description: The volatility of financial asset returns displays pronounced variation over the trading day. Our goal is nonparametric inference for the <i>average</i> intraday volatility pattern, viewed as a <i>function</i> of time-of-day. The functional inference is based on a long span of high-frequency return data. Our setup allows for general forms of volatility dynamics, including time-variation in the intraday pattern. The estimation is based on forming local volatility estimates from the high-frequency returns over overlapping blocks of asymptotically shrinking size, and then averaging these estimates across days in the sample. The block-based estimation of volatility renders the error in the estimation due to the martingale return innovation asymptotically negligible. As a result, the centered and scaled calendar volatility effect estimator converges to a Gaussian process determined by the empirical process error associated with estimating average volatility across the trading day. Feasible inference is obtained by consistently estimating the limiting covariance operator. Simulation results corroborate our theoretical findings. In an application to S&P 500 futures data, we find evidence for a shift in the intraday volatility pattern over time, including a more pronounced role for volatility outside U.S. trading hours in the latter part of the sample. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.14700563
title: Additional file 1 of 3D printing guide plate for accurate hemicortical bone tumor resection in metaphysis of distal femoral: a technical note

description: Additional file 1. Case 1. Case 2. Case 3. Case 4. Case 5 po 3 months.
DOI: 10.17632/rgm634p853.1
title: Distribution of atmospheric aerosols during the 2007 Mars dust storm (MY 28): Solar infrared occultation observations by SPICAM

description: Dataset for the publication "Distribution of atmospheric aerosols during the 2007 Mars dust storm (MY 28): Solar infrared occultation observations by SPICAM " by Fedorova et al.

Includes a list of orbits, and extinction profiles at 1152 nm in km-1, effective radius in mum, number density in cm-3, mass mixing ratio in kg/kg for dust and H2O ice aerosols from SPICAM/Mars-Express solar occultation observations from Ls=255 to Ls 305 of MY28 in the period of the Global Dust Storm of 2007. The nature of aerosol can't be distinguished by SPICAM IR. The Martian Climate Model and MCS/MRO observations were considered to determine the H2O ice for detached layers detected during observations. If the nature of aerosol was doubt, both H2O ice and dust properties were included in the files. If the MCD + MCS preferred ice but there was no a detached layer, both H2O ice and dust retrieved parameters were included in the files. 

Data contains folders with the list of orbits and aerosol properties and extinction profiles
for each occultation of MEX where SPICAM IR had measurements.
Effective radius, variance, MMRs data files are named "SPICAM_XXXXAY_aerosol_profiles.txt",
extinction data files are named "SPICAM_XXXXAY_extinction_profiles.txt",
where XXXX is the decimal orbit number,
Y is the occultation number in orbit.
DOI: 10.6084/m9.figshare.21516582.v1
title: The palynology of the Permian succession in the CSDP-2 Well, South Yellow Sea, China

description: The fully cored CSDP-2 Well, drilled in the central uplift region of the South Yellow Sea, China, provides indispensable and very significant research opportunities to understand the evolution of life, paleoclimate, paleogeography, and tectonics during the Permian in the South Yellow Sea area of the Yangtze paleoblock. We here analyze 118 samples from 893.7 to 1798.8 m depth of the CSDP-2 borehole core and recognize three Permian palynological assemblages, <i>Laevigatosporites minimus</i> – <i>Florinites florini</i> (MF) for the Kungurian mid-lower Qixia Formation, <i>Crucisaccites quadratoides</i> – <i>Limitisporites rhombicorpus</i> (QR) for the Capitanian lower Longtan Formation and <i>Macrotoispora media</i> – <i>Anticapipollis tornatilis</i> (MT) for the Wuchiapingian upper Longtan Formation, in an ascending order. These palynological assemblages indicate a warm and semi-humid rainforest paleoenvironment and a drying tendency of the paleoclimate. The present study area belongs to the Yangtze paleoblock in paleogeography and is a part of the Cathaysia flora based on mega-plant fossil records. However, our palynological assemblages show similarities to those of both South China and North China subzones and, especially, their pollen contents with arid coniferous affinities highly similar to those in the north part of the South China subzone. The presence of conifers might suggest a more arid climate in the North China subzone had started to affect the Yellow Sea area in the Lopingian (Permian).
DOI: 10.6084/m9.figshare.14700519
title: Additional file 1 of CsLAZY1 mediates shoot gravitropism and branch angle in tea plants (Camellia sinensis)

description: Additional file 1. The relevant primers
DOI: 10.17632/kpbkwd39tn.1
title: Construction Labour

description: This data we have collected from laborers who are working on construction sites.
DOI: 10.17632/y5stjsnp8s.1
title: HornBase - A Car Horns Dataset

description: To provide data for machine learning models capable of classifying car horns in a traffic environment, we created HornBase, a dataset comprising 1080 audio files of exactly one-second duration each, manually labeled and balanced into two classes: horn and not horn. The audio excerpts were collected in ten specific situational scenarios in which the audio signals can be received in the car where the horn will be analyzed, as well as three different horn styles: a short honk, a long one, and an intermittent sequence of three consecutive short honks. For each possible audio segment, three temporal windows are cut, with the first containing the initial half of a horn, the second containing the entire horn, and the third containing the final half of a horn.
DOI: 10.6084/m9.figshare.13126487.v1
title: Additional file 3 of Considerations for feature selection using gene pairs and applications in large-scale dataset integration, novel oncogene discovery, and interpretable cancer screening

description: Additional file 3. Top gene pairs (HER2 status). This file contains raw calculated data of the top 100 gene pairs and feature selection scores for the HER2-positive and HER2-negative comparison.
DOI: 10.6084/m9.figshare.16798174
title: Monitoring protein conformational changes using fluorescent nanoantennas

description: Fluorescent nanoantennas generated a transient fluorescence "spike" during the hydrolysis of a substrate by calf intestinal alkaline phosphatase (AP). With AP, these fluorescent nanoantennas were used to characterize:1) the hydrolysis of 15 substrates2) the hydrolysis of one substrate in the presence of six effectors<br>The substrates were <i>p­</i>-nitrophenylphosphate (pNPP), 4-methylumbelliferylphosphate (4MUP), pyrophosphate (PPi), β-glycerophosphate (BGP), phosphoenolpyruvate (PEP), L-phosphoserine (PSer), pyridoxal 5'-phosphate (PLP), D-glucose-6-phosphate (G6P), D-fructose-6-phosphate (F6P), adenosine 5'-monophosphate (AMP), adenosine 5'-diphosphate (ADP), adenosine 5'-triphosphate (ATP), guanosine 5'-triphosphate (GTP), phosphocreatine (PCr), and amifostine.<br>The effectors were the competitive inhibitors phosphate, molybdate, tungstate, arsenate, and vanadate, as well as magnesium ion. These were used with the substrate amifostine.<br>The 12-nucleotide nanoantenna used here has biotin at 5′ and fluorescein (FAM) at 3′. The excitation (λ<sub>ex</sub>) and emission (λ<sub>em</sub>) wavelengths were 498 nm and 520 nm, respectively. Conditions were [nanoantenna] = 150 nM, [streptavidin] = 50 nM, [biotinylated AP] = 20 nM, [substrate] = 300 μM, and as applicable, [inhibitor] = 30 μM or [Mg<sup>2+</sup>] = 5 mM. The buffer was 100 mM Tris, 10 mM NaCl, pH = 8.0, and temperature = 37 °C. All measurements were recorded in triplicate.<br>See associated paper for details about the procedure and reagents.
DOI: 10.6084/m9.figshare.13126724.v1
title: Additional file 6 of Stage-specific protein-domain mutational profile of invasive ductal breast cancer

description: Additional file 6 Table S4: (Related to Fig. 2) Functional annotation of the identified 22 protein domains.
DOI: 10.6084/m9.figshare.16798113.v1
title: <i>In situ</i> characterization of tensile behavior of laser rapid solidified Al–Si heterogeneous microstructures

description: Heterogeneous Al–Si microstructure comprising of sub-micron-scale Al dendrites and nanoscale Al–Si fibrous eutectic was fabricated by processing as-cast Al-20wt.%Si alloy using laser rapid solidification. <i>In situ</i> tension tests explored high tensile strength (∼600 MPa) and ductility (∼10%) and high strain hardening rate (∼7 GPa). Microstructural characterization revealed the plastic co-deformation mechanisms between soft Al dendrites and hard nanoscale Al–Si eutectic. The progression of plasticity in nanoscale Al–Si eutectic with increasing applied strain is accommodated by dislocation plasticity in the nano-Al channels and cracking Si nanofibers. The propagation of nano-cracks is suppressed by surrounding Al, retaining good ductility of the sample. <i>In situ</i> tension tests revealed the role of heterogeneous Al–Si microstructure in enhancing strain hardening rate and producing large back stresses and plasticity in sample even after fracture of nanoscale Si fibers.
DOI: 10.6084/m9.figshare.13126577.v1
title: Additional file 4 of Pan-cancer analysis of differential DNA methylation patterns

description: Additional file 4 Table S5B. Enrichment results of functional analysis using the GREAT tool for the remaining 36 PanDM clusters (FDRs are smaller than 0.05; folds of enrichment are larger than 2 for both the binomial and hypergeometric-distribution-based tests). (Excel)
DOI: 10.15156/bio/sh3300730.08fu
title: SH3300730.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3300731.08fu
title: SH3300731.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.