cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7823778
title: Self Supervised Cloud Classification Data Supplement

description: Supplementary data for: "Self Supervised Cloud Classification" Geiss et al. 2023. Includes trained neural networks and a copy of the image chips extracted from the "SGFF" dataset that were used for evaluating the trained networks.
DOI: 10.15156/bio/sh1326292.09fu
title: SH1326292.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.14443092.v1
title: Additional file 6 of Chromatin accessibility landscapes of immune cells in rheumatoid arthritis nominate monocytes in disease pathogenesis

description: Additional file 6: Table S5. The list of significantly changed chromatin accessible regions and peak related genes in OA-patient-derived monocytes after CRP stimulation.
DOI: 10.6084/m9.figshare.12870242.v1
title: Additional file 6 of A member of wheat class III peroxidase gene family, TaPRX-2A, enhanced the tolerance of salt stress

description: Additional file 6: Table S4. The cDNA-level evidence performing by RNA-seq data from seven plants.
DOI: 10.6084/m9.figshare.14443083.v1
title: Additional file 3 of Chromatin accessibility landscapes of immune cells in rheumatoid arthritis nominate monocytes in disease pathogenesis

description: Additional file 3: Table S2. QC table for all analysed ATAC-seq samples.
DOI: 10.6084/m9.figshare.12870233
title: Additional file 3 of A member of wheat class III peroxidase gene family, TaPRX-2A, enhanced the tolerance of salt stress

description: Additional file 3: Table S3. List of atypical class III peroxidase in investigated plant genomes.
DOI: 10.6084/m9.figshare.14443083
title: Additional file 3 of Chromatin accessibility landscapes of immune cells in rheumatoid arthritis nominate monocytes in disease pathogenesis

description: Additional file 3: Table S2. QC table for all analysed ATAC-seq samples.
DOI: 10.6084/m9.figshare.14443089.v1
title: Additional file 5 of Chromatin accessibility landscapes of immune cells in rheumatoid arthritis nominate monocytes in disease pathogenesis

description: Additional file 5: Table S4. The list of C3 related genes.
DOI: 10.6084/m9.figshare.14443089
title: Additional file 5 of Chromatin accessibility landscapes of immune cells in rheumatoid arthritis nominate monocytes in disease pathogenesis

description: Additional file 5: Table S4. The list of C3 related genes.
DOI: 10.6084/m9.figshare.14443092
title: Additional file 6 of Chromatin accessibility landscapes of immune cells in rheumatoid arthritis nominate monocytes in disease pathogenesis

description: Additional file 6: Table S5. The list of significantly changed chromatin accessible regions and peak related genes in OA-patient-derived monocytes after CRP stimulation.
DOI: 10.6084/m9.figshare.14443095
title: Additional file 7 of Chromatin accessibility landscapes of immune cells in rheumatoid arthritis nominate monocytes in disease pathogenesis

description: Additional file 7: Table S6. The list of differential expressed genes in OA-patient-derived monocytes after CRP stimulation.
DOI: 10.6084/m9.figshare.14443095.v1
title: Additional file 7 of Chromatin accessibility landscapes of immune cells in rheumatoid arthritis nominate monocytes in disease pathogenesis

description: Additional file 7: Table S6. The list of differential expressed genes in OA-patient-derived monocytes after CRP stimulation.
DOI: 10.6084/m9.figshare.20208457.v1
title: Additional file 1 of Efficacy and safety of trans-sub-Tenon's retrobulbar anesthesia for pars plana vitrectomy: a randomized trial

description: Additional file 1.
DOI: 10.6084/m9.figshare.11298635
title: A tomato and tall fescue intercropping system controls tomato stem rot

description: Intercropping can effectively control some plant soil-borne diseases. However, few studies on intercropping have focused on forage grass as companion plants. In this experiment, <i>Festuca arundinacea</i> (tall fescue) was selected as the intercropping forage to explore whether it could control tomato stem rot. We found that: (1) tomato intercropped with tall fescue had a significantly lower disease incidence and disease index of tomato stem rot than sole tomato; (2) the antifungal activities of the root exudates of tomato and tall fescue in intercropping system were significantly higher than those of sole tomato or tall fescue. Meanwhile, it was inferred that the main allelochemicals might be cyclohexane-1, 2-diol and putrescine based on the GC-MS analysis of root exudates of tall fescue. (3) RNA-seq suggested that intercropping with tall fescue significantly upregulated the expression of genes related to pathogenesis-related proteins and hormone metabolism of tomato compared to those in sole tomato.
DOI: 10.6084/m9.figshare.11298635.v1
title: A tomato and tall fescue intercropping system controls tomato stem rot

description: Intercropping can effectively control some plant soil-borne diseases. However, few studies on intercropping have focused on forage grass as companion plants. In this experiment, <i>Festuca arundinacea</i> (tall fescue) was selected as the intercropping forage to explore whether it could control tomato stem rot. We found that: (1) tomato intercropped with tall fescue had a significantly lower disease incidence and disease index of tomato stem rot than sole tomato; (2) the antifungal activities of the root exudates of tomato and tall fescue in intercropping system were significantly higher than those of sole tomato or tall fescue. Meanwhile, it was inferred that the main allelochemicals might be cyclohexane-1, 2-diol and putrescine based on the GC-MS analysis of root exudates of tall fescue. (3) RNA-seq suggested that intercropping with tall fescue significantly upregulated the expression of genes related to pathogenesis-related proteins and hormone metabolism of tomato compared to those in sole tomato.
DOI: 10.6084/m9.figshare.12871522
title: Development and Validation of Prognostic Nomograms to Predict Overall and Cancer-Specific Survival for Patients with Adenocarcinoma of the Urinary Bladder: A Population-Based Study

description: Adenocarcinoma of the bladder (ACB) rarely occurs but is associated with poor outcome. We aim to establish reliable nomograms for estimating cancer-specific survival (CSS) and overall survival (OS) of ACB patients. ACB patients were retrieved from the Surveillance, Epidemiology, and End Results (SEER) database (2004–2015). A total of 1,149 patients were randomly divided into training cohort (<i>n</i> = 692) and validation cohort (<i>n</i> = 457). Multivariate Cox proportional hazards regression models were employed to identify independent prognostic factors. Nomograms predicting OS and CSS were constructed utilizing screened factors. The performance of nomograms was internally and externally validated by calibration curves, the receiver operating characteristic (ROC) curves, concordance index (C-index), and decision curve analysis (DCA). OS nomogram incorporated age, race, histologic grade, American Joint Committee of Cancer (AJCC) stage, metastasis, surgery, chemotherapy, and tumor size. The C-indices were 0.754 (95% CI: 0.732–0.775) for training set and 0.743 (95% CI: 0.712–0.767) for validation set. Meanwhile, the calibration plots for 3- and 5-year OS displayed fine concordance between actual and predicted outcomes. In addition, higher areas under the curve (AUCs) were seen in training cohort (3-year: 0.799 vs. 0.630; 5-year: 0.797 vs. 0.648) and validation cohort (3-year: 0.802 vs. 0.662; 5-year: 0.752 vs. 0.660). Finally, DCA curves of the nomograms exhibited larger net benefits than AJCC stage. CSS nomogram showed similar results. Our study constructed and validated nomograms with improved discriminative abilities and clinical benefits to predict the survival outcomes of ACB patients. The models might assist clinicians in optimizing therapeutic management on individual levels.
DOI: 10.6084/m9.figshare.17065939
title: Additional file 2 of Integrative transcriptomic and metabolomic analysis of D-leaf of seven pineapple varieties differing in N-P-K% contents

description: Additional file 2.
DOI: 10.6084/m9.figshare.8153054
title: Effects of exercise training on cardiovascular risk factors in kidney transplant recipients: a systematic review and meta-analysis

description: <b>Background:</b> Whether exercise can improve cardiovascular health in kidney transplant recipients (KTRs) is unclear. Therefore, we performed a systematic review of the effects of exercise on cardiovascular risk factors in this population setting. <b>Methods:</b> Randomized control trials (RCTs) evaluating the impact of exercise on major clinical outcomes in KTRs were identified by searches in Cochrane CENTRAL, PubMed, EMBASE, OVID and CBM updated to December 2018. The main outcomes of interest were blood pressure, lipid profile, blood glucose level, arterial stiffness, kidney function, body weight, body mass index, exercise tolerance (VO<sub>2</sub> peak) and quality of life (QOL). <b>Results:</b> After screening 445 studies in the database, we included 12 RCTs in the review and 11 RCTs for further qualitative analysis. The results indicate a significant improvement in small arterial stiffness [mean difference (MD): −1.14, 95% confidence interval (CI): −2.19–0.08, <i>p</i> = .03], VO<sub>2</sub> peak (MD: 2.25, 95% CI: 0.54–3.69, <i>p</i> = .01), and QOL (MD: 12.87, 95% CI: 6.80–18.94, <i>p</i> &lt; .01) after exercise intervention in KTRs. However, there is no evidence for an improvement in blood pressure, lipid profile, blood glucose level, kidney function, body weight or body mass index. <b>Conclusion:</b> Exercise intervention in KTRs improves arterial stiffness but does not consistently contribute to the modification of other CVD risk factors like hypertension, dyslipidemia, hyperglycemia, decreased kidney function and obesity. Exercise also improves exercise tolerance and QOL in KTRs.
DOI: 10.6084/m9.figshare.8153054.v1
title: Effects of exercise training on cardiovascular risk factors in kidney transplant recipients: a systematic review and meta-analysis

description: <b>Background:</b> Whether exercise can improve cardiovascular health in kidney transplant recipients (KTRs) is unclear. Therefore, we performed a systematic review of the effects of exercise on cardiovascular risk factors in this population setting. <b>Methods:</b> Randomized control trials (RCTs) evaluating the impact of exercise on major clinical outcomes in KTRs were identified by searches in Cochrane CENTRAL, PubMed, EMBASE, OVID and CBM updated to December 2018. The main outcomes of interest were blood pressure, lipid profile, blood glucose level, arterial stiffness, kidney function, body weight, body mass index, exercise tolerance (VO<sub>2</sub> peak) and quality of life (QOL). <b>Results:</b> After screening 445 studies in the database, we included 12 RCTs in the review and 11 RCTs for further qualitative analysis. The results indicate a significant improvement in small arterial stiffness [mean difference (MD): −1.14, 95% confidence interval (CI): −2.19–0.08, <i>p</i> = .03], VO<sub>2</sub> peak (MD: 2.25, 95% CI: 0.54–3.69, <i>p</i> = .01), and QOL (MD: 12.87, 95% CI: 6.80–18.94, <i>p</i> &lt; .01) after exercise intervention in KTRs. However, there is no evidence for an improvement in blood pressure, lipid profile, blood glucose level, kidney function, body weight or body mass index. <b>Conclusion:</b> Exercise intervention in KTRs improves arterial stiffness but does not consistently contribute to the modification of other CVD risk factors like hypertension, dyslipidemia, hyperglycemia, decreased kidney function and obesity. Exercise also improves exercise tolerance and QOL in KTRs.
DOI: 10.6084/m9.figshare.21258882.v1
title: Additional file 2 of Sex differences in clinical cognitive impairment with Lewy bodies: a Chinese multicenter study

description: Additional file 2: Onset age groups (years old) and Age at last visit groups (years old).
DOI: 10.6084/m9.figshare.21258882
title: Additional file 2 of Sex differences in clinical cognitive impairment with Lewy bodies: a Chinese multicenter study

description: Additional file 2: Onset age groups (years old) and Age at last visit groups (years old).
DOI: 10.6084/m9.figshare.21258911
title: Additional file 10 of Genomic Architecture of Yield Performance of an Elite Rice Hybrid Revealed by its Derived Recombinant Inbred Line and Their Backcross Hybrid Populations

description: Additional file 10: Table S6. Allele frequencies of Q9311B and WSSM in 1946 accessions from 3 K-RG.
DOI: 10.6084/m9.figshare.21258917.v1
title: Additional file 12 of Genomic Architecture of Yield Performance of an Elite Rice Hybrid Revealed by its Derived Recombinant Inbred Line and Their Backcross Hybrid Populations

description: Additional file 12: Table S7. The function of 45 cloned yield related genes identified as the candidate genes for determining the performance of hybrid rice variety QYSM.
DOI: 10.6084/m9.figshare.21258917
title: Additional file 12 of Genomic Architecture of Yield Performance of an Elite Rice Hybrid Revealed by its Derived Recombinant Inbred Line and Their Backcross Hybrid Populations

description: Additional file 12: Table S7. The function of 45 cloned yield related genes identified as the candidate genes for determining the performance of hybrid rice variety QYSM.
DOI: 10.5281/zenodo.10666846
title: ОСЛОЖНЕНИЯ, ПРИЗНАКИ И СИМПТОМЫ САХАРНОГО ДИАБЕТА
DOI: 10.5281/zenodo.10666847
title: ОСЛОЖНЕНИЯ, ПРИЗНАКИ И СИМПТОМЫ САХАРНОГО ДИАБЕТА
DOI: 10.6084/m9.figshare.21258944.v1
title: Additional file 8 of Genomic Architecture of Yield Performance of an Elite Rice Hybrid Revealed by its Derived Recombinant Inbred Line and Their Backcross Hybrid Populations

description: Additional file 8: Table S5. Classification of 2,736 epistatic QTL pairs into 13 types according to their gene actions identified in the Q9311/WSSM combined population.
DOI: 10.6084/m9.figshare.21258938
title: Additional file 6 of Genomic Architecture of Yield Performance of an Elite Rice Hybrid Revealed by its Derived Recombinant Inbred Line and Their Backcross Hybrid Populations

description: Additional file 6: Table S3. Summary of 639 main-effect QTL affecting 12 traits identified in the combined population across three environments by inclusive composite interval mapping.
DOI: 10.6084/m9.figshare.21258938.v1
title: Additional file 6 of Genomic Architecture of Yield Performance of an Elite Rice Hybrid Revealed by its Derived Recombinant Inbred Line and Their Backcross Hybrid Populations

description: Additional file 6: Table S3. Summary of 639 main-effect QTL affecting 12 traits identified in the combined population across three environments by inclusive composite interval mapping.
DOI: 10.6084/m9.figshare.21258911.v1
title: Additional file 10 of Genomic Architecture of Yield Performance of an Elite Rice Hybrid Revealed by its Derived Recombinant Inbred Line and Their Backcross Hybrid Populations

description: Additional file 10: Table S6. Allele frequencies of Q9311B and WSSM in 1946 accessions from 3 K-RG.
DOI: 10.6084/m9.figshare.12870341
title: Additional file 4 of Development of simultaneous interaction prediction approach (SiPA) for the expansion of interaction network of traditional Chinese medicine

description: Additional file 4: Table S4. Compound-target interactions related to Compound Salvia miltiorrhiza.
DOI: 10.6084/m9.figshare.21258920
title: Additional file 13 of Genomic Architecture of Yield Performance of an Elite Rice Hybrid Revealed by its Derived Recombinant Inbred Line and Their Backcross Hybrid Populations

description: Additional file 13: Table S8. The genotypic and phenotypic matrix of the population in ICIMapping format.
DOI: 10.6084/m9.figshare.12870347.v1
title: Additional file 6 of Development of simultaneous interaction prediction approach (SiPA) for the expansion of interaction network of traditional Chinese medicine

description: Additional file 6: Table S6. Cardiovascular disease-protein interactions related to compound Salvia miltiorrhiza.
DOI: 10.6084/m9.figshare.12870347
title: Additional file 6 of Development of simultaneous interaction prediction approach (SiPA) for the expansion of interaction network of traditional Chinese medicine

description: Additional file 6: Table S6. Cardiovascular disease-protein interactions related to compound Salvia miltiorrhiza.
DOI: 10.6084/m9.figshare.12870353.v1
title: Additional file 8 of Development of simultaneous interaction prediction approach (SiPA) for the expansion of interaction network of traditional Chinese medicine

description: Additional file 8: Table S8. Compound-cardiovascular disease interactions predicted based on simple inference model.
DOI: 10.6084/m9.figshare.21258941
title: Additional file 7 of Genomic Architecture of Yield Performance of an Elite Rice Hybrid Revealed by its Derived Recombinant Inbred Line and Their Backcross Hybrid Populations

description: Additional file 7: Table S4. Epistasis QTLs for 12 traits in the three environments.
DOI: 10.15468/dl.mpx8m4
title: Occurrence Download

description: A dataset containing 3477 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Aves laguna El Tinije"
 ]
}

 The dataset includes 3477 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001135-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kymunn
title: Occurrence Download

description: A dataset containing 689 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is CSIC-Real Jardín Botánico-Anthos. Sistema de Información de las Plantas de España",
 "TaxonKey is Pinus canariensis C.Sm."
 ]
}

 The dataset includes 689 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007640-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pux8x4
title: Occurrence Download

description: A dataset containing 5457 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((5.025 52.425,5.075 52.425,5.075 52.475,5.025 52.475,5.025 52.425))",
 "DatasetKey is Observation.org, Nature data from around the World",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 5457 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0305691-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vuj93e
title: Occurrence Download

description: A dataset containing 1493 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is CardObs : Observations naturalistes issues de l'outil CardObs-Données naturalistes de Pierre-Yves NOEL"
 ]
}

 The dataset includes 1493 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0232421-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c4d5b9
title: Occurrence Download

description: A dataset containing 718 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acacia berlandieri Benth."
 ]
}

 The dataset includes 718 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001136-150311145101897/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hqtdgk
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((24.49219 52.62528,24.02344 22.59371,93.39844 16.4115,91.52344 49.38236,24.49219 52.62528))",
 "HasCoordinate is true",
 "TaxonKey is Prunus dulcis (Mill.) D.A.Webb",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 25 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007640-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r7wfdb
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Tanzania, United Republic of",
 "TaxonKey is Lestes Leach, 1815"
 ]
}

 The dataset includes 33 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0318257-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cwdnxe
title: Occurrence Download

description: A dataset containing 815 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "TaxonKey is Ailanthus altissima (Mill.) Swingle"
 ]
}

 The dataset includes 815 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240945-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ympths
title: Occurrence Download

description: A dataset containing 3297586 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bacillariophyceae"
 ]
}

 The dataset includes 3297586 records from 1267 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076141-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pp0yqj
title: Occurrence Download

description: A dataset containing 1394 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Avifauna de la Isla de Cozumel, Quintana Roo"
 ]
}

 The dataset includes 1394 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001136-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dtk2dp
title: Occurrence Download

description: A dataset containing 918587 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Corvus corax Linnaeus, 1758",
 "Year 2019-2021"
 ]
}

 The dataset includes 918587 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0232395-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.