cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/bmg4f64bdz.2
title: Field-validated species distribution model of Canada Warbler (Cardellina canadensis) in Northwestern Ontario

description: The Canada Warbler (CAWA) is a species of conservation concern, but its ecological needs and distribution remain poorly understood. Additionally, contradictory findings exist regarding the impact of logging on CAWA abundance and habitat use. Furthermore, its habitat needs may be distorted by limitations in current habitat availability compared to historical conditions. We developed a predictive high-resolution (30 m) field-validated species distribution model (SDM) in Ecoregion 4W of Northwestern Ontario, Canada, where little field-derived information about the species is available. We aimed to assess how time since disturbance mainly due by logging affects CAWA occurrence and distribution and also the accuracy of the model by ground-truth validation. We used a desktop dataset from different sources, and due to limited number of observations (78 after filtered) we enhanced the dataset with field-collected data gathered in 2021 and 2022. We ran different models also to test the accuracy of the models using only desktop data and a datasete enhances with field-collected data. 
 
The SDM’s environmental covariates included a bare soil index (BASI), a normalized water index (NDWI) as an indicator of deciduos vegetation, an enhanced vegetation index (EVI), a digital elevation model (DEM), years since disturbance (DISTURB [usually by logging] 1-20 years since last disturbance happened, 21 value represent undisturbed or no disturbed more than 20 years ago), distance to mature coniferous forest (D_CONIF), tree canopy height (CAN) and distance to water (WATER) as indicator of riparian zones. The models that used field-collected data showed a moderate performance for both training and test data (AUC 0.7) while the model that used only desktop dataset showed a poor performance (AUC 0.6); NDWI, WATER, EVI and D_CONIF were the most influential covariates indicating high association of CAWA to deciduous vegetation, riparian areas, shrub cover and importance of coniferous stands. CAWA occurrence probability was high in undisturbed areas, but also it has a high predicted probability (&gt;0.6) in areas within six years since disturbance; CAWA may take advantage of regenerated forest depending on shrub density and retention of old-growth forest structure ( CAWA had a high prediction of occurrence areas with canopies higher than 10m tall).
DOI: 10.17632/g885pdr98z.1
title: Expression of foraging genes is associated with the division of labor among Western and Eastern honey bee adult workers

description: In the division of labor (DOL), individual bees exhibit varying behavioral responses to the same stimulus. Specifically, the response of adult worker bees to sucrose is highly variable and closely linked to differences in the behavioral decision-making. However, it is unclear whether patterns of gene-behavior interactions influence the DOL. In this study, we investigated the DOL mechanism in honeybee adult workers is associated with the sucrose responsiveness of bee foragers. First, we quantified the gustatory response scores (GRS) of the Western bee Apis mellifera and the Eastern bee Apis cerana under four tasks, that is, pollen foraging, nectar foraging, water foraging, and guarding. Second, we determined the mRNA levels of six forage-related genes in bees’ brains, namely the foraging genes Amfor and Acfor, which encode a cyclic guanosine monophosphate-dependent protein kinase, the dopamine receptor genes AmOct and AcOct, and the insulin receptor genes AmInR and AcInR. The results revealed that among Western bees, water and pollen foragers had the highest GRS. Among Eastern bees, water foragers had significantly higher GRS than nectar foragers. However, we observed no significant difference in the GRS between A. mellifera and A. cerana bee species under different tasks. The highest expression of foraging genes was detected in water foragers among A. mellifera species and guard bees among A. cerana species. Furthermore, we observed a significant positive correlation between foraging gene expressions and GRS in both Western and Eastern foragers. The results suggest that both bee species exhibit the same sensitivity in foraging for food in their ecological niches, and PKG signaling in the bees’ brain is directly linked to the DOL.
DOI: 10.17632/kwhvmd2mt8.1
title: LDHU3_16.1850

description: Kinesin; Leishmania donovani (HU3 strain)
DOI: 10.17632/jk6sbmjcfy.1
title: LDHU3_16.1880

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/tjd65gr93t.1
title: LDHU3_16.1860

description: Kinesin; Leishmania donovani (HU3 strain)
DOI: 10.17632/kybmgxfny5.1
title: LDHU3_16.1910

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/6xm78dbvc8.1
title: LDHU3_16.1900

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/k9f4nfb7bn.1
title: Molecular Statistics (MST) Source Codes

description: These files contain the source codes for the Molecular Statistics Framework. 

Abstract:
This study presents Molecular Statistics (MST): a novel computational methodology designed to simulate thermodynamic properties of solid materials from room temperature to melting point with high efficiency. MST combines principles of statistical mechanics with molecular potentials, employing position distribution functions to generate atomic oscillations. Unlike conventional methods, MST enables fully independent and parallel calculations on small atomic sub-assemblies, reducing the computational load by orders of magnitude relative to molecular dynamics (MD) and Monte Carlo (MC) simulations. This approach bypasses the need for thermodynamic integration, directly sampling the Helmholtz free energy, which further minimizes computational expense. To validate MST, we benchmark its performance against state-of-the-art methods, including nonequilibrium molecular dynamics (NEMD), and the local harmonic approximation (LHA), a rapid yet less precise method. The evaluation demonstrates MST’s accuracy in predicting key thermodynamic properties, such as Gibbs free energy, entropy, and heat capacity, for several transition metals, aligning closely with experimental data. Furthermore, MST achieves these calculations within seconds, competitive with NEMD in both runtime and accuracy, underscoring its potential as an efficient alternative for high-temperature thermodynamic simulations. The MST framework thus emerges as a promising tool for materials science applications, particularly for complex systems where traditional methods become computationally prohibitive.

Please cite the following article, when using the codes: 
Vincent Feyen, Nele Moelans,
Molecular statistics: A novel computationally efficient modeling approach to simulate thermodynamic properties of solid materials up to the melting point,
Computational Materials Science,
Volume 248,
2025,
113558,
ISSN 0927-0256,
https://doi.org/10.1016/j.commatsci.2024.113558.
(https://www.sciencedirect.com/science/article/pii/S0927025624007791)
DOI: 10.17632/dcwpc2y7cy.1
title: Latin American bioethical principles

description: This data set is the construction of twenty-three bioethical principles selected from a Latin American perspective, based on a review carried out since 2018, in which it is desired to correlate twenty-three categories of analysis, applicable to legal sciences. In such a way that, different and different positions and bioethical theories have been reviewed, selecting only three currents of these, taken as theoretical categories, which were: principialist bioethics; Latin American bioethics; and, personal bioethics. All with the intention of building a description of each of the bioethical principles chosen.
DOI: 10.17632/8rgh56jjyy.1
title: Evolutionary study of Metalloproteinases

description: This dataset is the product of the article entitled Metalloproteinases in restorative dentistry: an in silico study for an ideal animal model.
Abstract: 
Dentin degradation, providing restorative procedures with greater longevity. Among MMPs, collagenases and gelatinases are intrinsic constituents of the fibrillar network of the organic matrix of human dentin and are the most abundant MMPs in this tissue. In this study, we were able to obtain 176,077 sequences of mammalian MMPs from the UNIPROT database. After data curation, 3,178 sequences were aligned and used in phylogenetic reconstruction to search for the model organism evolutionarily closest to humans. We were also able to annotate (n=235) and re-annotate (n=27) several MMP sequences. In our results we were able to infer the most appropriate model organisms for studies in restorative dentistry for collagenases and gelatinases.
DOI: 10.17632/dm7h8d7jcx.1
title: Evaluating Cultural Heritage Vulnerability and Flood Exposure in the Vesdre Valley, Belgium: A Dataset from the 2021 Flood Event

description: This dataset provides comprehensive data on cultural heritage (CH) vulnerability and flood risk analysis for the Vesdre Valley in Belgium. The study area covers approximately 700 km², with the River Vesdre flowing 70 km through the region. The dataset includes information on the impacts of the July 2021 flood event, specifically the low-pressure system ‘Bernd,’ which caused severe flooding in several European regions, including the Vesdre Valley.
Data Sources:
• Spatial Data: Official flood hazard map updated on 7 July 2022, based on field surveys, drone imagery, and spatial interpolation. Data available from the Wallonia geoportal WalOnMap and the local statistical information portal WalStat.
• Statistical Units: The dataset is organized by 531 statistical units, with varying sizes from 4 to 5851 ha. Key statistics include the number of households and areas affected by the flood.
Data Processing and Analysis:
• Software Used: QGIS for data processing and visualization, RStudio for statistical analysis.
• Analytical Framework: Includes CH concentration mapping, vulnerability classification using principal component analysis (PCA), socio-economic disparity assessment, and household exposure analysis.
• Metrics Calculated: Gross and net concentration of CH assets, area-based vulnerability, socio-economic deprivation index, and comparative environmental risk index (CERI).
Methodology:
1. Gross and Net Concentration: Calculation of CH concentration by statistical unit, considering both point data (designated heritage) and area-based data (heritage sites).
2. Vulnerability Analysis: Assessment of CH and area-based vulnerabilities using spatial and statistical methods.
3. Socio-economic Disparity: Analysis based on 23 indicators of socio-economic status.
4. Exposure to Flooding: Calculation of household exposure and correlation with CH vulnerability.
5. Comparative Environmental Risk Index: Analysis of the relationship between socio-economic deprivation, CH vulnerability, and flood exposure.
Results:
• Concentration of CH: Spatial distribution of built and natural heritage assets in the Vesdre Valley, highlighting areas with high concentration and vulnerability.
• Flood Impact: Analysis of flood effects on CH assets and socio-economically deprived populations, with a focus on areas requiring targeted interventions.
• Multidimensional Vulnerability: Integration of CH vulnerability, area-based vulnerability, and socio-economic deprivation to identify high-risk zones.
Contact Information:
For any queries regarding the dataset, please contact:
GINZARLY Manal
University of Liège
Manal.Ginzarly@uliege.be
ORCID iD 0000-0003-3693-9258
DOI: 10.17632/r8hc54x6bf.1
title: Glycometabolic reprogramming-mediated XRCC1 lactylation confers therapeutic resistance in high ALDH1A3-expressing glioblastomas

description: This dataset supports the submitted article "Glycometabolic reprogramming-mediated XRCC1 lactylation confers therapeutic resistance in high ALDH1A3-expressing glioblastomas". It includes one text file of mRNA sequencing for glioblastoma stem cells (GSCs), one text file for non-targeted metabolomics analyses in GSCs and two text files to show the immunoprecipitation-mass spectrometry (IP-MS) analysis in GSCs.
DOI: 10.17632/f6hwnnw63g.1
title: Dataset of Received Optical Power Measurements on Pork Meat Sample for Optical-Based In-Body Communications Studies Conducted on a Free Space

description: This dataset allows researchers to conduct optical-based in-body communication experiments in a free-space environment using single-beam Near Infrared (NIR) LED 810 nm 375 mW (maximum). The LED current settings in the dataset have been standardized to maintain consistent optical power levels similar to those used in experiments involving biological tissue. The measurements on the pork meat samples were conducted at LED current levels of 100 mA, 200 mA, 300 mA, 400 mA, and 500 mA. The dataset includes measurements from six pork meat samples with varying thickness and fat/muscle composition and comparable measurements on free space. The file (.xls) contains two sheets: one visualizing the samples ("Sample photograph") and the other presenting the measurements ("Results-pork meat & free space"). The second sheet presents six tables, with different colors used to differentiate between measurements taken from the samples (white) and measurements in free space (yellow). If you need further questions, please do not hesitate to contact us at syifaul.fuada@oulu.fi
DOI: 10.17632/fwv5rcd6hh.1
title: Non-Invasive Investigation of Gold Nanoparticle Transport and Fate in Soil

description: Here you can find the raw data used to create all figures of the manuscript "Non-Invasive Investigation of Gold Nanoparticle Transport and Fate in Soil" in Excel format.
DOI: 10.17632/mgwwth625t.1
title: LDHU3_16.1950

description: Endoplasmic reticulum oxidoreductin; Leishmania donovani (HU3 strain)
DOI: 10.17632/7bsjsbdcg7.1
title: A study of Identification and verification of the role of key metabolites and metabolic pathways on ASFV replication, Zunji shi et.al

description: African swine fever (ASF), one of the most harmful diseases prevalent in pig farms nowadays, caused by the African swine fever virus (ASFV) that cause enormous economic losses. Viremia usually develops within a few days after ASFV infection. However, the metabolic changes in pig serum after ASFV infection remain unclear. In this study, serum samples collected from ASFV-infected pig at different times were analyzed using pseudotargeted metabolomics method. Metabolomic analysis revealed 225 metabolites decreased and 65 metabolites increased in serum collected in ASFV infected 5 days post-infection (dpi), 254 metabolites decreased and 58 metabolites increased in serum collected ASFV infected 10 dpi. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis of the significant changed metabolites indicated that dopaminergic synapse has the highest rich factor in both ASFV5 (ASFV infected 5 dpi) VS ASFV0 (ASFV infected 0 dpi) and ASFV10 (ASFV infected 10 dpi) VS ASFV0.
DOI: 10.15468/dl.f5f4jj
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "TaxonKey is Locusta migratoria (Linnaeus, 1758)"
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0384500-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/ndvh4whc6n.1
title: LINF_260024500

description: TLC domain containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/t9ss34h3w8.1
title: LINF_260025000

description: Thioredoxin-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/k2db92p4x9.1
title: LINF_260022100

description: sphingolipid delta 4 desaturase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/db8p7ryc2n.1
title: Supplemental material: Varied treatment patterns among patients with palmoplantar pustulosis (PPP): A claims-based cohort study using data from two large US databases

description: Supplemental material for JAAD International research letter "Varied treatment patterns among patients with palmoplantar pustulosis (PPP): A claims-based cohort study using data from two large US databases"
DOI: 10.17632/d9p6s6pjbx.1
title: LDHU3_16.1970

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/y55hcrkf65.1
title: LDHU3_16.1960

description: DNA polymerase I alpha catalytic subunit; Leishmania donovani (HU3 strain)
DOI: 10.17632/kpkgytbztj.1
title: Hydrogeochemistry Characteristics and Formation-Evolution Mechanism of Certain Solid-Tidal Sensitive Geothermal Waters from Maoming-Yulin Region in Southern China_Huang

description: This dataset is related to figures in manuscript entitled “Hydrogeochemistry Characteristics and 
Formation-Evolution Mechanism of Certain Solid-Tidal Sensitive Geothermal Waters from 
Maoming-Yulin Region in Southern China”
DOI: 10.17632/kpkgytbztj.2
title: Hydrogeochemistry Characteristics and Formation-Evolution Mechanism of Certain Solid-Tidal Sensitive Geothermal Waters from Maoming-Yulin Region in Southern China_Huang

description: This dataset is related to figures in manuscript entitled “Hydrogeochemistry Characteristics and 
Formation-Evolution Mechanism of Certain Solid-Tidal Sensitive Geothermal Waters from 
Maoming-Yulin Region in Southern China”
DOI: 10.17632/6z9nkzys4v.1
title: Ultrasound Mediated Microbubble Sonoporation

description: CEUS examination of 20L5: enhance from CEUS timer 00:00:22, wash out at 00:00:50.
DOI: 10.17632/tcrfh22jv5.1
title: Tautomerism and Rotamerism of Favipiravir and Halogenated Analogues in Solution and in the Solid State

description: FID data for new compound and all NMR tautomeric/rotameric-analysis
DOI: 10.17632/vb686txspg.1
title: LDHU3_16.2040

description: Prohibitin 1 | PHB1; Leishmania donovani (HU3 strain)
DOI: 10.17632/kvcrr94573.1
title: LINF_260030800

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/6mg3z97j27.1
title: LDHU3_16.2010

description: U1-70K | RBP2 | 4U1 small nuclear ribonucleoprotein; Leishmania donovani (HU3 strain)
DOI: 10.17632/gzbzmhy6x8.1
title: LINF_260026100

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/xcmdr8j6xc.1
title: LDHU3_16.1980

description: mt-SAF7 | KRIPP10; Leishmania donovani (HU3 strain)
DOI: 10.17632/hwz54s535n.1
title: Data for:Improved Population Mapping for China Using the 3D Build-ing, Nighttime Light, Points-of-interest, and Land Use/Cover Data Within a Multiscale Geographically Weighted Regression Model

description: Auxiliary Data.gdb:
Land_use: original land use data
POI_name: interests-point-data from the Amap platform (name indicates category)

New_gridded_population_dataset(.gdb): experimental result data, i.e., a gridded population map of mainland China with a resolution of 100 meters

New_minus_WorldPop_PopulationResidual(.gdb): pixel-level residuals of the new gridded population dataset with the Worldpop dataset

POI_Correlation_Coefficient:
Zonal statistical output of POI kernel density values: summary of various POI kernel densities in residential areas of administrative units
Summary of POI Pearson correlation coefficients: sum of Pearson's correlation coefficients for 13 types of POIs at a certain bandwidth

PopulationData_AdministrativeUnitLevel.gdb:
Population_data_mainlandChina_level3: population data at the district and county level in mainland China
Population_data_Name_level4_Table: township and street-level population data for provinces and municipalities

Note: 
Due to the storage space limitation, 3D building, nighttime light, and WorldPop datasets have not been uploaded. To access these publicly available data, please visit the official website via the "Related links" at the bottom. In addition, we are not authorized to share data for the fourth level of administrative boundaries, so we only share the corresponding population data in tabular form.
DOI: 10.17632/d87tmr6td3.2
title: The influence of devulcanization and revulcanization on sulfur crosslink types: Recycling of ground tyre rubber

description: Devulcanized rubber could be a valuable material feedstock to help manufacture sustainable rubber products. However, the differences in chemistry and structure of devulcanized rubber have limited industrial uptake. This work demonstrates how devulcanization affects the concentration and ratios of mono-, di- and poly- sulfidic crosslinks. These residual crosslinks make devulcanized rubber chemically dissimilar from virgin rubber, affecting (re)vulcanization. The hypothesis that sulfur rank of revulcanized material can be modified by sulfur/accelerator ratio was evaluated by two different cure packages. Despite substantial differences in accelerator/sulfur ratio, both recycled rubber compounds favoured formation of poly-sulfidic crosslinks.
DOI: 10.17632/vk79373zvm.1
title: Supplementary Materials for the manuscript entitled "A global resilience analysis-based benchmark framework for comparing reliability surrogate measures of water distribution systems"

description: The document provides the supporting information for the manuscript entitled "A global resilience analysis-based benchmark framework for comparing reliability surrogate measures of water distribution systems", which has been submitted to MDPI's Sustainablity journal.
DOI: 10.17632/j95hc7bm7m.1
title: Comet 81P/Wild 2 dust impactors of Stardust turnip-like tracks analogous to cluster IDPs

description: Raw and processed data related to the research, including (1) Kohler beam sputtering tests on a SC-Ol grain; (2) Application of the analytical procedure developed for subsurface cometary samples to a simulant mount of 7244-Aug; (3) Low beam current FE-EPMA measurements of olivine and pyroxene reference materials; (4) BSE and SE images of Wild 2 silicate fragments analyzed; and (5) EPMA and oxygen isotope data produced in this study.
DOI: 10.17632/j95hc7bm7m.2
title: Comet 81P/Wild 2 dust impactors of Stardust turnip-like tracks analogous to cluster IDPs

description: Raw and processed data related to the research, including (1) Kohler beam sputtering tests on a SC-Ol grain; (2) Application of the analytical procedure developed for subsurface cometary samples to a simulant mount of 7244-Aug; (3) Low beam current FE-EPMA measurements of olivine and pyroxene reference materials; (4) BSE and SE images of Wild 2 silicate fragments analyzed; and (5) EPMA and oxygen isotope data produced in this study.