cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25021016.v1
title: Supplementary Material for: Immunogenicity and safety of the three-dose COVID-19 vaccine regimen in patients receiving renal replacement therapy: a systematic review and meta-analysis

description: Background 
A three-dose regimen is the current standard for COVID-19 vaccination, but systematic data on immunogenicity and safety in CKD patients remains limited. 

Objectives 
We conducted a meta-analysis on the immunogenicity and safety of three-dose COVID-19 vaccination in patients on renal replacement therapy (RRT).

Methods
Systematic literature search in four electronic databases yielded twenty eligible studies (2117 patients, 94% received mRNA vaccines) for meta-analysis. 

Results 
The overall seropositivity rate of anti-SARS-CoV-2 was 74.2% (95% CI: 65.0%-83.4%) after three-dose COVID-19 vaccination. The seropositivity rate of anti-SARS-CoV-2 in kidney transplant recipients (KTRs) was 64.6% (95% CI: 58.7%-70.5%), and 43.5% (95% CI: 38.5%-48.6%) of non-responders after second dose became seropositive after third dose. The seropositivity rate of anti-SARS-CoV-2 was 92.9% (95% CI: 89.5%-96.2%) in dialysis patients, and 64.6% (95% CI: 46.8%-82.3%) of non-responders after second dose became seropositive after third dose. In KTRs, each year increase in transplant vintage was associated with 35.6% increase in anti-SARS-CoV-2 seropositivity (95% CI: 15.9%-55.4%, p=0.01). There were no serious adverse events attributed to vaccination in KTRs and the commonest local and systemic adverse events were injection site pain and fatigue respectively.
DOI: 10.17630/b416d19a-a803-444d-853c-f5654b13b0f1
title: "Antibiotics under our feet" Public Engagement Project (dataset)

description: The attached data files are from the analysis of soil samples collected during the University of St Andrews "Antibiotics under our feet" public engagement activity in the form of a citizen science project funded by a ScotPEN Wellcome Engagement Award to Clarissa Melo Czekster, University of St Andrews. The following files types and formats are included: - Soil sample data ID, collection date and location and associated environmental data in .xlsx format (Excel spreadsheet); - Quantitative results from heavy metal analysis of soil samples in .xlsx format (Excel spreadsheet); - Raw sequence files; text-based format for representing nucleotide or amino acid sequence with quality data: .fastq (zipped, can be opened with a text editor); - Interactive Krona plot of DNA sequencing results in .html format. More details on the software required are provided in the Readme.txt file. This work was supported by a ScotPEN Wellcome Engagement Award: Phase 1 [grant number 1-SBS0-XCW045]
DOI: 10.17630/736bc89c-6e32-4a87-8b2e-8575172259f8
title: "Antibiotics under our feet" Full Bioinformatics Output (Batch 2)

description: The attached data files are the full bioinformatics output for the first six soil samples collected during the University of St Andrews "Antibiotics under our feet" citizen science project funded by a ScotPEN Wellcome Engagement Award to Clarissa Melo Czekster, University of St Andrews. The logFile gives further details. Files names starting "Pin" correspond to map pins placed on the interactive map on the project website at each soil sample collection location. Each map pin generates a unique ID number. These numbers have been used across the project for identifying soil samples and their associated data. This full dataset consists of the logFile and 14 .zip files. This batch contains the second 7 .zip files.
DOI: 10.5281/zenodo.10528858
title: Chelmon_rostratus_EPLATE_40_H10_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.10528859
title: Chelmon_rostratus_EPLATE_40_H10_spades_01.fasta.gz

description: .
DOI: 10.3886/e191911
title: Data and Code for: The Immigrant Next Door

description: We study how decades-long exposure to individuals of a given foreign descent shapes natives' attitudes and behavior toward that group. Using individualized donations data, we show that long-term exposure to a given foreign ancestry leads to more generous behavior specifically toward that group's ancestral country. Focusing on exposure to Arab-Muslims to examine mechanisms, we show that long-term exposure: i) decreases explicit and implicit prejudice against Arab-Muslims, ii) reduces support for policies and political candidates hostile toward Arab-Muslims, iii) increases charitable donations to Arab countries, iv) leads to more personal contact with Arab-Muslims, and v) increases knowledge of Arab-Muslims and Islam.
description: All counties in the US<br>. Smallest Geographic Unit: County
description: web-based survey;
DOI: 10.5281/zenodo.10526947
title: Data from: An Impact Assessment of Par-Baking and Storage on the Quality of Wheat, Whole Wheat, and Whole Rye Breads

description: This dataset is linked to the article by Celeste Verbeke, Els Debonne, Hannah Van Leirsberghe, Filip Van Bockstaele and Mia Eeckhout, published in Foods (January 2024):"An Impact Assessment of Par-Baking and Storage on the Quality of Wheat, Whole Wheat, and Whole Rye Breads" (DOI: https://doi.org/10.3390/foods13020224).

Content of this dataset



Pasting parameters.csv



Flour composition:



WF = wheat flour

WWM = whole wheat meal

WRM = whole rye meal

WWM:WF = 50:50 combination of whole wheat meal and wheat flour

WRM = 50:50 combination of whole rye meal and wheat flour



Parameters:



IV = initial viscosity [mPa∙s]

PaT = pasting temperature [°C]

PeV = peak viscosity [mPa∙s]

PeT = peak temperature [°C]

HS = holding strenght [mPa∙s]

FV = final viscosity [mPa∙s]

BD = breakdown [mPa∙s]

SBp = setback from peak [mPa∙s]

SBt = total setback [mPa∙s]





Pasting data WF.csv

Pasting data WWM.csv

Pasting data WWM-WF.csv

Pasting data WRM.csv

Pasting data WRM-WF.csv

Crumb core temperatures.csv







WB = wheat bread

WWB = whole wheat bread

WRB = whole rye bread





Bread characterstics.csv



Bread type:



WB = wheat bread

WWB = whole wheat bread

WRB = whole rye bread



Degree of PB (par-baking):



95% of normal full baking time

75% of normal full baking time

50% of normal full baking time



Evaluation moment:



PB0 (PB breads, after the par-bake step)

PB4 (PB breads, after four storage days)

FB0 (FB breads, after the full-bake step)

FB2 (FB breads, after two storage days)
DOI: 10.5281/zenodo.10526948
title: Data from: An Impact Assessment of Par-Baking and Storage on the Quality of Wheat, Whole Wheat, and Whole Rye Breads

description: This dataset is linked to the article by Celeste Verbeke, Els Debonne, Hannah Van Leirsberghe, Filip Van Bockstaele and Mia Eeckhout, published in Foods (January 2024):"An Impact Assessment of Par-Baking and Storage on the Quality of Wheat, Whole Wheat, and Whole Rye Breads" (DOI: https://doi.org/10.3390/foods13020224).

Content of this dataset



Pasting parameters.csv



Flour composition:



WF = wheat flour

WWM = whole wheat meal

WRM = whole rye meal

WWM:WF = 50:50 combination of whole wheat meal and wheat flour

WRM = 50:50 combination of whole rye meal and wheat flour



Parameters:



IV = initial viscosity [mPa∙s]

PaT = pasting temperature [°C]

PeV = peak viscosity [mPa∙s]

PeT = peak temperature [°C]

HS = holding strenght [mPa∙s]

FV = final viscosity [mPa∙s]

BD = breakdown [mPa∙s]

SBp = setback from peak [mPa∙s]

SBt = total setback [mPa∙s]





Pasting data WF.csv

Pasting data WWM.csv

Pasting data WWM-WF.csv

Pasting data WRM.csv

Pasting data WRM-WF.csv

Crumb core temperatures.csv







WB = wheat bread

WWB = whole wheat bread

WRB = whole rye bread





Bread characterstics.csv



Bread type:



WB = wheat bread

WWB = whole wheat bread

WRB = whole rye bread



Degree of PB (par-baking):



95% of normal full baking time

75% of normal full baking time

50% of normal full baking time



Evaluation moment:



PB0 (PB breads, after the par-bake step)

PB4 (PB breads, after four storage days)

FB0 (FB breads, after the full-bake step)

FB2 (FB breads, after two storage days)
DOI: 10.7927/fjr9-a973
title: Documentation for the U.S. Social Vulnerability Index Grids
title: Documentation for the U.S. Social Vulnerability Index, v1 (2000, 2010, 2014, 2016, 2018)

description: The U.S. Social Vulnerability Index Grids data set contains gridded layers for the overall Centers for Disease Control and Prevention (CDC) Social Vulnerability Index (SVI) using four sub-category themes (Socioeconomic, Household Composition & Disability, Minority Status & Language, and Housing Type & Transportation) based on census tract level inputs from 15 variables for the years 2000, 2010, 2014, 2016, and 2018. SVI values range between 0 and 1 based on their percentile position among all census tracts in the U.S., with 0 representing lowest vulnerability census tracts and 1 representing highest vulnerability census tracts. SEDAC has gridded these vector inputs to create 1 km spatial resolution raster surfaces allowing users to obtain vulnerability metrics for any user defined area within the U.S. Utilizing inputs from CIESIN's Gridded Population of the World, Version 4 (GPWv4) Revision 11 data sets, a mask is applied for water, and optionally, for no population. The data are provided in two different projection formats, NAD83 as a U.S. specific standard, and WGS84 as a global standard. The goal of the SVI is to help identify vulnerable communities by ranking them on these inputs across the U.S.
DOI: 10.5281/zenodo.10513380
title: Maintal Blackout simulation model and input data

description: Input data and results of the simulation of blackout scenarios.

Raw data for the creation of electrical load profiles for the blackout simulation.
DOI: 10.5281/zenodo.10513381
title: Maintal Blackout simulation model and input data

description: Input data and results of the simulation of blackout scenarios.

Raw data for the creation of electrical load profiles for the blackout simulation.
DOI: 10.6084/m9.figshare.25021043
title: Raw results of ‘truvari bench’ for a comparison between PanPop and other software.

description: Raw results of ‘truvari bench’ for a comparison between PanPop and other software.
DOI: 10.6084/m9.figshare.25021073.v1
title: 20240119_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.25021073
title: 20240119_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.17630/f2143101-255b-43f4-ab4e-1e0037319f9e
title: Surface functionalized metal-organic frameworks for binding coronavirus proteins (dataset)
DOI: 10.6084/m9.figshare.25021082
title: Supplement Material for: Prospective Study Confirms Oxandrolone-Associated Improvement in Height in Growth Hormone-Treated Adolescent Girls with Turner Syndrome

description:  <em>Background/Aims:</em> Untreated girls with Turner syndrome (TS) have growth failure, and adult height is, on average, 20 cm less than predicted height. Treatment with growth hormone (GH) is now standard of care. The objective of this study was to investigate the benefit of adding oxandrolone (Ox) to GH in a long-term, randomized, placebo (Pl)-controlled prospective trial to near adult height in TS. <em>Methods:</em> Prospective, randomized, Pl-controlled study: 76 girls with TS (ages 10–14.9 years) were randomized to receive Ox (0.06 mg/kg/day) or Pl in combination with GH (0.35 mg/kg/week, daily) over 2 years. Auxologic data, breast and pubic hair Tanner stages, and hormone and lipid levels were measured. Subjects who chose to continue were followed in a 2-year double-blind extension, also received estrogen therapy (years 3, 4), and had dual-energy X-ray absorptiometry evaluation of bone density (years 3, 4). <em>Results:</em> At year 4, the change in absolute height and height SDS was greater in the GH/Ox versus GH/Pl group [26.2 ± 6.7 vs. 22.2 ± 5.1 cm, analysis of covariance (ANCOVA) p &lt; 0.001; 1.8 ± 0.9 vs. 1.2 ± 0.7 standard deviation scores, ANCOVA p &lt; 0.001]. Bone mineral density (BMD) of the wrist (0.51 ± 0.17 vs. 0.54 ± 0.05 g/cm2) and spine (0.91 ± 0.34 vs. 0.96 ± 0.13 g/cm2) in the GH/Ox versus GH/Pl groups was similar after 4 years. Breast development was slower in the GH/Ox versus GH/Pl group [year 4: Tanner stage 2.9 ±1.3 (Ox) vs. 4.1 ± 1.3 (Pl), p = 0.003], and menarche was approximately 1 year later. <em>Conclusions:</em> The addition of Ox to GH at mean age 12.0 ± 1.7 year augmented height gain after 4 years of treatment, slowed breast development and did not affect BMD in girls with TS. Whether initiation of Ox prior to initiation of pubertal development would optimize height gain without impeding breast development will require further study.
DOI: 10.6084/m9.figshare.25021082.v1
title: Supplement Material for: Prospective Study Confirms Oxandrolone-Associated Improvement in Height in Growth Hormone-Treated Adolescent Girls with Turner Syndrome

description:  <em>Background/Aims:</em> Untreated girls with Turner syndrome (TS) have growth failure, and adult height is, on average, 20 cm less than predicted height. Treatment with growth hormone (GH) is now standard of care. The objective of this study was to investigate the benefit of adding oxandrolone (Ox) to GH in a long-term, randomized, placebo (Pl)-controlled prospective trial to near adult height in TS. <em>Methods:</em> Prospective, randomized, Pl-controlled study: 76 girls with TS (ages 10–14.9 years) were randomized to receive Ox (0.06 mg/kg/day) or Pl in combination with GH (0.35 mg/kg/week, daily) over 2 years. Auxologic data, breast and pubic hair Tanner stages, and hormone and lipid levels were measured. Subjects who chose to continue were followed in a 2-year double-blind extension, also received estrogen therapy (years 3, 4), and had dual-energy X-ray absorptiometry evaluation of bone density (years 3, 4). <em>Results:</em> At year 4, the change in absolute height and height SDS was greater in the GH/Ox versus GH/Pl group [26.2 ± 6.7 vs. 22.2 ± 5.1 cm, analysis of covariance (ANCOVA) p &lt; 0.001; 1.8 ± 0.9 vs. 1.2 ± 0.7 standard deviation scores, ANCOVA p &lt; 0.001]. Bone mineral density (BMD) of the wrist (0.51 ± 0.17 vs. 0.54 ± 0.05 g/cm2) and spine (0.91 ± 0.34 vs. 0.96 ± 0.13 g/cm2) in the GH/Ox versus GH/Pl groups was similar after 4 years. Breast development was slower in the GH/Ox versus GH/Pl group [year 4: Tanner stage 2.9 ±1.3 (Ox) vs. 4.1 ± 1.3 (Pl), p = 0.003], and menarche was approximately 1 year later. <em>Conclusions:</em> The addition of Ox to GH at mean age 12.0 ± 1.7 year augmented height gain after 4 years of treatment, slowed breast development and did not affect BMD in girls with TS. Whether initiation of Ox prior to initiation of pubertal development would optimize height gain without impeding breast development will require further study.
DOI: 10.5281/zenodo.10528596
title: A Dataset from Collected News through the INCENTIVE Community Insider

description: This dataset contains the collected news items related to Citizen Science and public engagement, harvested from trusted online sources worldwide and provided by the Community Insider of the INCENTIVE Digital Toolkit.
description: The INCENTIVE project has received funding from the European Union's Horizon 2020 Research and Innovation Programme under Grant Agreement No. 101005330 . The following INCENTIVE consortium partners, namely ARISTOTELIO PANEPISTIMIO THESSALONIKIS (GREECE), UNIVERSIDAD AUTONOMA DE BARCELONA (SPAIN), UNIVERSITEIT TWENTE (THE NETHERLANDS), VILNIAUS GEDIMINO TECHNIKOS UNIVERSITETAS (LITHUANIA), have contributed in the deployment of the surveys in their respective CSHs.
DOI: 10.5281/zenodo.10528597
title: A Dataset from Collected News through the INCENTIVE Community Insider

description: This dataset contains the collected news items related to Citizen Science and public engagement, harvested from trusted online sources worldwide and provided by the Community Insider of the INCENTIVE Digital Toolkit.
description: The INCENTIVE project has received funding from the European Union's Horizon 2020 Research and Innovation Programme under Grant Agreement No. 101005330 . The following INCENTIVE consortium partners, namely ARISTOTELIO PANEPISTIMIO THESSALONIKIS (GREECE), UNIVERSIDAD AUTONOMA DE BARCELONA (SPAIN), UNIVERSITEIT TWENTE (THE NETHERLANDS), VILNIAUS GEDIMINO TECHNIKOS UNIVERSITETAS (LITHUANIA), have contributed in the deployment of the surveys in their respective CSHs.
DOI: 10.3886/e192844
title: Data and Code for: "The Nurture of Nature and the Nature of Nurture: How Genes and Investments Interact in the Formation of Skills"

description: This paper studies the interplay between genetics and family investments in the process of skill formation. We model and estimate the joint evolution of skills and parental investments throughout early childhood. We document three genetic mechanisms: the direct effect of child genes on skills, the indirect effect of child genes via parental investments, and family genetic influences captured by parental genes. We show that genetic effects are dynamic, increase over time and operate via environmental channels. Our paper highlights the value of integrating biological and social perspectives into a single unified framework.<br><br>
DOI: 10.6073/pasta/06954751c87ea7695dd043844e2745f9
title: Projected climate and canopy change lead to thermophilization and homogenization of forest floor vegetation in a hotspot of plant species richness, Berchtesgaden National Park, Bavaria, Germany

description: Mountain forests are plant diversity hotspots, but changing climate and increasing forest disturbances will likely lead to far-reaching plant community change. Projecting future change, however, is challenging for forest understory plants, which respond to forest structure and composition as well as climate. Here, we jointly assessed effects of both climate and forest change, including wind and bark beetle disturbances, using the process-based simulation model iLand in a protected landscape in the northern Alps (Berchtesgaden National Park, Germany), asking: (1) How do understory plant communities respond to 21st-century change in a topographically complex mountain landscape, representing a hotspot of plant species richness? (2) How important are climatic changes (i.e., direct climate effects) versus forest structure and composition changes (i.e., indirect climate effects and recovery from past land use) in driving understory responses at landscape scales? Stacked individual species distribution models fit with climate, forest, and soil predictors (248 species currently present in the landscape, derived from 150 field plots stratified by elevation and forest development, overall AUC = 0.86) were driven with projected climate (RCP4.5 and RCP8.5) and modeled forest variables to predict plant community change. Nearly all species persisted in the landscape in 2050, but on average 8% of the species pool was lost by the end of the century. By 2100, landscape mean species richness and understory cover declined (-13% and -8%, respectively), warm-adapted species increasingly dominated plant communities (i.e., thermophilization, +12%), and plot-level turnover was high (62%). Subalpine forests experienced the greatest richness declines (-16%), most thermophilization (+17%), and highest turnover (67%), resulting in plant community homogenization across elevation zones. Climate rather than forest change was the dominant driver of understory responses. The magnitude of unabated 21st-century change is likely to erode plant diversity in a species richness hotspot, calling for stronger conservation and climate mitigation efforts.
DOI: 10.17630/e4405284-4aa6-43b7-9074-744935ef3ccf
title: Investigating native metal ion binding sites in mammalian histidine-rich glycoprotein (dataset)
DOI: 10.5517/ccdc.csd.cc2c4m16
title: CCDC 2179177: Experimental Crystal Structure Determination

description: Related Article: Priyanka Adhikari, Nitumoni Hazarika, Kalishankar Bhattacharyya, Animesh Das|2024|Org.Lett.|26|286|doi:10.1021/acs.orglett.3c03960
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d50p9
title: CCDC 2209360: Experimental Crystal Structure Determination

description: Related Article: Rahman Bikas, Neda Heydari, Pegah Asadollahi, Tadeusz Lis |2023|Catal.Lett|154|116|doi:10.1007/s10562-023-04300-7
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d50qb
title: CCDC 2209361: Experimental Crystal Structure Determination

description: Related Article: Rahman Bikas, Neda Heydari, Pegah Asadollahi, Tadeusz Lis |2023|Catal.Lett|154|116|doi:10.1007/s10562-023-04300-7
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25405/data.ncl.24711657
title: NCL-IMV

description: Tissue sections stained for mitochondrial markers
DOI: 10.25405/data.ncl.24711657.v1
title: NCL-IMV

description: Tissue sections stained for mitochondrial markers
DOI: 10.5517/ccdc.csd.cc2f4vp4
title: CCDC 2238996: Experimental Crystal Structure Determination

description: Related Article: Reinald Fischer, Helmar Görls, Philipp Schüler, Regina Suxdorf, Matthias Westerhausen|2024|J.Mol.Struct.|1297|136921|doi:10.1016/j.molstruc.2023.136921
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f4vq5
title: CCDC 2238997: Experimental Crystal Structure Determination

description: Related Article: Reinald Fischer, Helmar Görls, Philipp Schüler, Regina Suxdorf, Matthias Westerhausen|2024|J.Mol.Struct.|1297|136921|doi:10.1016/j.molstruc.2023.136921
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.