cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26617171
title: Additional file 2 of A systematic comparison of human mitochondrial genome assembly tools

description: Additional file 2. An Excel spreadsheet containing Tables S1–S6. Table S1. Computational metrics including run time, memory and CPU usage for simulated datasets. Table S2. Scores were calculated for the mitochondrial assemblies generated by all ten tools using the simulated dataset. Table S3. Information about sequencing depth and number of reads. Table S4. Scores were calculated for the mitochondrial assemblies based on publicly available datasets, including the down-sampled data. Table S5. Detailed information about True Positives, False Positives, Precision and other metrics. Table S6. Information about the Mitochondrial assemblers GitHub commits used in this benchmark study. Table S7. Comparison of perfect assemblies of all the sequencing depths for each assembler with the reference mitochondrial genome using QUAST.
DOI: 10.15468/dl.hs6g8p
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.945046 -32.905979, 147.940554 -32.905979, 147.940554 -32.926191, 147.938308 -32.926191, 147.938308 -32.928437, 147.945046 -32.928437, 147.945046 -32.932928, 147.940554 -32.932928, 147.940554 -32.93742, 147.938308 -32.93742, 147.938308 -32.950895, 147.940554 -32.950895, 147.940554 -32.948649, 147.945046 -32.948649, 147.945046 -32.955386, 147.9428 -32.955386, 147.9428 -32.957632, 147.945046 -32.957632, 147.945046 -32.962124, 147.947292 -32.962124, 147.947292 -32.944157, 147.940554 -32.944157, 147.940554 -32.941912, 147.947292 -32.941912, 147.947292 -32.917208, 147.951783 -32.917208, 147.951783 -32.91047, 147.954029 -32.91047, 147.954029 -32.905979, 147.951783 -32.905979, 147.951783 -32.899241, 147.945046 -32.899241, 147.945046 -32.905979), (147.945046 -32.905979, 147.947292 -32.905979, 147.947292 -32.91047, 147.945046 -32.91047, 147.945046 -32.905979))"
 ]
}

 The dataset includes 45 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067949-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f4tbu4
title: Occurrence Download

description: A dataset containing 223 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (CHN.31.1_1, CHN.31.3_1, CHN.31.2_1, CHN.31.8_1, CHN.31.6_1)",
 "TaxonKey is Mergus merganser Linnaeus, 1758"
 ]
}

 The dataset includes 223 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067950-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26617171.v1
title: Additional file 2 of A systematic comparison of human mitochondrial genome assembly tools

description: Additional file 2. An Excel spreadsheet containing Tables S1–S6. Table S1. Computational metrics including run time, memory and CPU usage for simulated datasets. Table S2. Scores were calculated for the mitochondrial assemblies generated by all ten tools using the simulated dataset. Table S3. Information about sequencing depth and number of reads. Table S4. Scores were calculated for the mitochondrial assemblies based on publicly available datasets, including the down-sampled data. Table S5. Detailed information about True Positives, False Positives, Precision and other metrics. Table S6. Information about the Mitochondrial assemblers GitHub commits used in this benchmark study. Table S7. Comparison of perfect assemblies of all the sequencing depths for each assembler with the reference mitochondrial genome using QUAST.
DOI: 10.5281/zenodo.13310210
title: Collective Asymmetric Synthesis of Thiosilvatins: raw NMR data

description: Raw fid files containing NMR data. The files are compressed as a single file in .zip format.
DOI: 10.5281/zenodo.13310211
title: Collective Asymmetric Synthesis of Thiosilvatins: raw NMR data

description: Raw fid files containing NMR data. The files are compressed as a single file in .zip format.
DOI: 10.6084/m9.figshare.26576162
title: Additional file 4 of TBX3 is dynamically expressed in pancreatic organogenesis and fine-tunes regeneration

description: Additional file 4. Includes individual values for quantitative data depicted in Supplementary Figures 2 and 6.
DOI: 10.6084/m9.figshare.26576162.v1
title: Additional file 4 of TBX3 is dynamically expressed in pancreatic organogenesis and fine-tunes regeneration

description: Additional file 4. Includes individual values for quantitative data depicted in Supplementary Figures 2 and 6.
DOI: 10.6084/m9.figshare.26576159
title: Additional file 3 of TBX3 is dynamically expressed in pancreatic organogenesis and fine-tunes regeneration

description: Additional file 3. Includes individual values for quantitative data depicted in Figs 3, 4 and 5.
DOI: 10.6084/m9.figshare.26576153.v1
title: Additional file 1 of TBX3 is dynamically expressed in pancreatic organogenesis and fine-tunes regeneration

description: Additional file 1: Fig. S1. Expression patterns of specific marker genes for cluster assignment in murine pancreata. Fig. S2. TBX3 is expressed during human pancreatic differentiation and in stellate cells of the adult pancreas. Fig. S3. Antibody and co-expression validation of TBX3 and Venus markers and validation of pancreatic recombination. Fig. S4. TBX2 expression in Ptf1a-Cre and Nkx3-2-Cre driven Tbx3-KO mice pancreata. Fig. S5. TBX3-knockdown does not impair the formation of human pancreatic tissue. Fig. S6. Tbx3 depletion does not alter T cell and macrophage infiltration during tissue regeneration after acute pancreatitis.
DOI: 10.6084/m9.figshare.26576159.v1
title: Additional file 3 of TBX3 is dynamically expressed in pancreatic organogenesis and fine-tunes regeneration

description: Additional file 3. Includes individual values for quantitative data depicted in Figs 3, 4 and 5.
DOI: 10.6084/m9.figshare.26576153
title: Additional file 1 of TBX3 is dynamically expressed in pancreatic organogenesis and fine-tunes regeneration

description: Additional file 1: Fig. S1. Expression patterns of specific marker genes for cluster assignment in murine pancreata. Fig. S2. TBX3 is expressed during human pancreatic differentiation and in stellate cells of the adult pancreas. Fig. S3. Antibody and co-expression validation of TBX3 and Venus markers and validation of pancreatic recombination. Fig. S4. TBX2 expression in Ptf1a-Cre and Nkx3-2-Cre driven Tbx3-KO mice pancreata. Fig. S5. TBX3-knockdown does not impair the formation of human pancreatic tissue. Fig. S6. Tbx3 depletion does not alter T cell and macrophage infiltration during tissue regeneration after acute pancreatitis.
DOI: 10.15468/dl.zk48dc
title: Occurrence Download

description: A dataset containing 40531 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is TRIAP Franklin 2008 Waterbirds - Marine records, Northern Australia (1900-2002)"
 ]
}

 The dataset includes 40531 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067951-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a2f7ss
title: Occurrence Download

description: A dataset containing 1607 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is NT Alligator Rivers Region Bird Ground Count, Northern Territory, Australia (1981-1983)"
 ]
}

 The dataset includes 1607 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067952-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q8avjf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.982605 -32.93742, 148.982605 -32.941912, 148.980359 -32.941912, 148.980359 -32.944157, 148.982605 -32.944157, 148.982605 -32.948649, 148.987097 -32.948649, 148.987097 -32.950895, 148.989342 -32.950895, 148.989342 -32.948649, 148.993834 -32.948649, 148.993834 -32.944157, 148.989342 -32.944157, 148.989342 -32.941912, 148.984851 -32.941912, 148.984851 -32.93742, 148.982605 -32.93742)), ((148.989342 -32.950895, 148.989342 -32.955386, 148.993834 -32.955386, 148.993834 -32.950895, 148.989342 -32.950895)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067953-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26576180
title: Additional file 1 of Use of machine learning-based integration to develop a monocyte differentiation-related signature for improving prognosis in patients with sepsis

description: Additional file 1: Table S1. The baseline information of the samples used in the study.
DOI: 10.6084/m9.figshare.26576180.v1
title: Additional file 1 of Use of machine learning-based integration to develop a monocyte differentiation-related signature for improving prognosis in patients with sepsis

description: Additional file 1: Table S1. The baseline information of the samples used in the study.
DOI: 10.15468/dl.fm3jad
title: Occurrence Download

description: A dataset containing 1138 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Senecio scandens Buch.-Ham. ex D.Don",
 "Year 2000-2024"
 ]
}

 The dataset includes 1138 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067954-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26706655
title: Source data of the manuscript titled “Decreasing trend in destructive potential of tropical cyclones in the South Indian Ocean since the mid-1990s”

description: This file provides the source data for all the FIGURES in Manuscript titled "Decreasing trend in destructive potential of tropical cyclones in the South Indian Ocean since the mid-1990s"
DOI: 10.15468/dl.gxzuca
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brachypelma hamorii Tesmoingt, Cleton & Verdez, 1997"
 ]
}

 The dataset includes 88 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067956-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cu7zej
title: Occurrence Download

description: A dataset containing 11250 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is El Censo Neotropical de Aves Acuáticas en Colombia (CNAA): 2002 - 2011"
 ]
}

 The dataset includes 11250 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067955-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26576222
title: Additional file 1 of Ancient lineages of the keratin-associated protein (KRTAP) genes and their co-option in the evolution of the hair follicle

description: Additional file 1. BLAST strategy and results.
DOI: 10.6084/m9.figshare.26708408
title: Additional file 1 of Overexpression of wheat spermidine synthase gene enhances wheat resistance to Fusarium head blight

description: Additional file 1: Table S1. SPDS/SPMS protein sequences from different plant species used for phylogenetic tree. Table S2. Primers used in this study.
DOI: 10.6084/m9.figshare.26708408.v1
title: Additional file 1 of Overexpression of wheat spermidine synthase gene enhances wheat resistance to Fusarium head blight

description: Additional file 1: Table S1. SPDS/SPMS protein sequences from different plant species used for phylogenetic tree. Table S2. Primers used in this study.
DOI: 10.6084/m9.figshare.26617180
title: Additional file 1 of Molecular detection of pathogens from ticks collected from dogs and cats at veterinary clinics in Finland

description: Additional file 1: Table S1. Comparison between qPCR and 16S next-generation sequencing results.
DOI: 10.15468/dl.6rqvzz
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.742304 -32.935174, 148.742304 -32.941912, 148.737813 -32.941912, 148.737813 -32.948649, 148.735567 -32.948649, 148.735567 -32.941912, 148.72883 -32.941912, 148.72883 -32.948649, 148.733321 -32.948649, 148.733321 -32.950895, 148.737813 -32.950895, 148.737813 -32.957632, 148.742304 -32.957632, 148.742304 -32.955386, 148.74455 -32.955386, 148.74455 -32.93742, 148.751288 -32.93742, 148.751288 -32.935174, 148.742304 -32.935174)), ((148.751288 -32.93742, 148.751288 -32.941912, 148.758025 -32.941912, 148.758025 -32.93742, 148.751288 -32.93742)), ((148.751288 -32.941912, 148.749042 -32.941912, 148.749042 -32.944157, 148.751288 -32.944157, 148.751288 -32.941912)))"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067957-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13315689
title: GO-SHIP Easy Ocean: Formatted and gridded ship-based hydrographic section data

description: GO-SHIP (The Global Ocean Ship-based Hydrographic Investigations Program) has developed the protocols and methods to generate a data product that concatenates all occupations of individual sections into a time-series; the GO-SHIP Easy Ocean. Here we provide access to the analysis-ready gridded GO-SHIP Easy Ocean product that enhances the accessibility of this unique data set that spans four decades, comprised of more than 40 cross-ocean transects, many with multiple repeats.

This product, of uniformly calibrated CTD (temperature, salinity and oxygen) data, provides easy access to and use of the high-quality hydrographic temperature and salinity data that span more than 40 years. The GO-SHIP Easy Ocean product will underpin the quality control of autonomous platforms, provide a ready assessment of ocean-only and coupled climate model simulations, and be used in specific research projects. The GO-SHIP Easy Oceanis a companion to the GLODAP inorganic and carbon product. The section data are available from Zenodo in two standard arrangements: Uninterpolated (reported) and interpolated (gridded). For both arrangements, five quantities are recorded; in situ temperature in ITS-90 scale, in situ salinity in PSS-78 scale, the dissolved oxygen concentration in μmol/kg, Conservative Temperature in °C, and Absolute Salinity in g/kg. The data are available in various formats.

Cite Katsumata et al (2022) when using this product and include the following acknowledgment statement in any publication or derived product:

Data were collected and made publicly available by the International Global Ship-based Hydrographic Investigations Program GO-SHIP (https://www.go-ship.org/) and the national programs that contribute to it.
description: Update History

2024 August Update bugfix



Gridded NetCDF version had a bug. Only gridded_netcdf.zip is updated. Other output files remain the same as 2024 August Update.


2024 August Update



New additions



P14N (2023)

P13 (2018)

P04 (2015)

I08S (2024) under I08S-I09N/

I05 (2023)



Reprocessed



A05 -- reason




2023 October Update



New additions



A25 (OVIDE) section

P02 (2022)

P03 (2021)

P09 (2022)



Reprocessed with newly identified Standard Sea Water correction



AR07W (1992, 1993)

SR04 (1990)



All gridded NetCDF files updated with new citation


2023 February Emergency Update



A bug was found in the gridding program. The bug affects small-scale features in the gridded product, The bug does not affect the reported product. All gridded files (ASCII, binary, Matlab, NetCDF) on this CCHDO archive have been updated.


2022 October Update



New cruises added:



P01 (2021)

AR07W (2015)

SR03 (2018)

SR01 (2018)

SR01 (2021)

P10 (2014)

P03 (2013)



New section added:



A9.5




2021 October Update



New cruises added:



A20 (2021)

A22 (2021)




2020 September



First publication
DOI: 10.5281/zenodo.13261286
title: GO-SHIP Easy Ocean: Formatted and gridded ship-based hydrographic section data

description: GO-SHIP (The Global Ocean Ship-based Hydrographic Investigations Program) has developed the protocols and methods to generate a data product that concatenates all occupations of individual sections into a time-series; the GO-SHIP Easy Ocean. Here we provide access to the analysis-ready gridded GO-SHIP Easy Ocean product that enhances the accessibility of this unique data set that spans four decades, comprised of more than 40 cross-ocean transects, many with multiple repeats.

This product, of uniformly calibrated CTD (temperature, salinity and oxygen) data, provides easy access to and use of the high-quality hydrographic temperature and salinity data that span more than 40 years. The GO-SHIP Easy Ocean product will underpin the quality control of autonomous platforms, provide a ready assessment of ocean-only and coupled climate model simulations, and be used in specific research projects. The GO-SHIP Easy Oceanis a companion to the GLODAP inorganic and carbon product. The section data are available from Zenodo in two standard arrangements: Uninterpolated (reported) and interpolated (gridded). For both arrangements, five quantities are recorded; in situ temperature in ITS-90 scale, in situ salinity in PSS-78 scale, the dissolved oxygen concentration in μmol/kg, Conservative Temperature in °C, and Absolute Salinity in g/kg. The data are available in various formats.

Cite Katsumata et al (2022) when using this product and include the following acknowledgment statement in any publication or derived product:

Data were collected and made publicly available by the International Global Ship-based Hydrographic Investigations Program GO-SHIP (https://www.go-ship.org/) and the national programs that contribute to it.
description: Update History

2024 August Update



New additions



P14N (2023)

P13 (2018)

P04 (2015)

I08S (2024) under I08S-I09N/

I05 (2023)



Reprocessed



A05 -- reason




2023 October Update



New additions



A25 (OVIDE) section

P02 (2022)

P03 (2021)

P09 (2022)



Reprocessed with newly identified Standard Sea Water correction



AR07W (1992, 1993)

SR04 (1990)



All gridded NetCDF files updated with new citation


2023 February Emergency Update



A bug was found in the gridding program. The bug affects small-scale features in the gridded product, The bug does not affect the reported product. All gridded files (ASCII, binary, Matlab, NetCDF) on this CCHDO archive have been updated.


2022 October Update



New cruises added:



P01 (2021)

AR07W (2015)

SR03 (2018)

SR01 (2018)

SR01 (2021)

P10 (2014)

P03 (2013)



New section added:



A9.5




2021 October Update



New cruises added:



A20 (2021)

A22 (2021)




2020 September



First publication
DOI: 10.6084/m9.figshare.26617207
title: Additional file 2 of The dynamics of deltamethrin resistance evolution in Aedes albopictus has an impact on fitness and dengue virus type-2 vectorial capacity

description: Additional file 2: Data S1. Excel spreadsheet containing, in separate sheets, the numerical values that were used to generate graphs, histograms etc. for Figure panels 1C, 2A-K, 3G, 3H, 3J, 3K, 4A-F, 5B, S1A and S2B-L.
DOI: 10.6084/m9.figshare.26617267
title: Additional file 3 of Effectiveness of creative story therapy for dementia: a systematic review and meta-analysis

description: Additional file 3: Original data of creative expression story therapy included in the literature.
DOI: 10.6084/m9.figshare.24143769.v1
title: Additional file 2 of Wild ungulates as sentinels of flaviviruses and tick-borne zoonotic pathogen circulation: an Italian perspective

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.24143766
title: Additional file 1 of Wild ungulates as sentinels of flaviviruses and tick-borne zoonotic pathogen circulation: an Italian perspective

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.24143769
title: Additional file 2 of Wild ungulates as sentinels of flaviviruses and tick-borne zoonotic pathogen circulation: an Italian perspective

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26617267.v1
title: Additional file 3 of Effectiveness of creative story therapy for dementia: a systematic review and meta-analysis

description: Additional file 3: Original data of creative expression story therapy included in the literature.
DOI: 10.15468/dl.33s5d6
title: Occurrence Download

description: A dataset containing 736 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (CHN.31.1_1, CHN.31.3_1, CHN.31.2_1, CHN.31.8_1, CHN.31.6_1)",
 "TaxonKey is Podiceps cristatus (Linnaeus, 1758)"
 ]
}

 The dataset includes 736 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067958-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26708480
title: Additional file 1 of Girdling behavior of the longhorn beetle modulates the host plant to enhance larval performance

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26708480.v1
title: Additional file 1 of Girdling behavior of the longhorn beetle modulates the host plant to enhance larval performance

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26708281
title: <b>Supplementary Table 1</b>

description: <b>Mean (</b><b>±</b><b> SD</b><b>) accuracy and area under the curve (AUC) of the logistic regression models in classifying cows with poor or good likelihood of conception at first insemination</b>
DOI: 10.6084/m9.figshare.26708281.v1
title: <b>Supplementary Table 1</b>

description: <b>Mean (</b><b>±</b><b> SD</b><b>) accuracy and area under the curve (AUC) of the logistic regression models in classifying cows with poor or good likelihood of conception at first insemination</b>
DOI: 10.15468/dl.tqarhk
title: Occurrence Download

description: A dataset containing 9526 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Senecio vulgaris L.",
 "Year 2024-2024"
 ]
}

 The dataset includes 9526 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067960-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26708513
title: Additional file 1 of Proteo-transcriptomic profiles reveal key regulatory pathways and functions of LDHA in the ovulation of domestic chickens (Gallus gallus)

description: Additional file 1. Egg laying records of all animals.
DOI: 10.6084/m9.figshare.26708513.v1
title: Additional file 1 of Proteo-transcriptomic profiles reveal key regulatory pathways and functions of LDHA in the ovulation of domestic chickens (Gallus gallus)

description: Additional file 1. Egg laying records of all animals.
DOI: 10.25346/s6eecgix/tfynwa
title: Qt6Network.dll
DOI: 10.25346/s6eecgix/klimer
title: qt_nl.qm
DOI: 10.25346/s6eecgix/wmwrku
title: qt_fa.qm
DOI: 10.25346/s6eecgix/53wbgz
title: qt_sk.qm
DOI: 10.25346/s6eecgix/popepp
title: qt_pt_BR.qm
DOI: 10.25346/s6eecgix/mpvyxx
title: jpeg62.dll
DOI: 10.25346/s6eecgix/rh4oyc
title: qt_it.qm
DOI: 10.25346/s6eecgix/t5rtcm
title: qt_bg.qm
DOI: 10.25346/s6eecgix/asgo8d
title: qt_nn.qm