cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.5nm01
title: Data from: Weapon allometry varies with latitude in the New Zealand giraffe weevil

description: Animal body size commonly shows a relationship with latitude to the degree
 that this phenomenon is one of the few ‘rules’ discussed in evolutionary
 ecology: Bergmann's rule. Although exaggerated secondary sexual
 traits frequently exhibit interesting relationships with body size
 (allometries) and are expected to evolve rapidly in response to
 environmental variation, the way in which allometry might interact with
 latitude has not been addressed. We present data showing latitudinal
 variation in body size and weapon allometry for the New Zealand giraffe
 weevil (Lasiorhynchus barbicornis). Males display an extremely elongated
 rostrum used as a weapon during fights for access to females. Consistent
 with Bergmann's rule, mean body size increased with latitude. More
 interestingly, weapon allometry also varied with latitude, such that lower
 latitude populations exhibited steeper allometric slopes between weapon
 and body size. To our knowledge, this is the first study to document a
 latitudinal cline in weapon allometry and is therefore a novel
 contribution to the collective work on Bergmann's rule and secondary
 sexual trait variation.
description: NZ Giraffe weevil
 measurements_raw dataThis file contains all
 of the body and weapon size measurements of Lasiorhynchus barbicornis from
 eleven different locations around the North Island of New
 Zealand.Painting et al_Lasiorhynchus
 barbicornis_raw data measurements.xlsx
DOI: 10.5061/dryad.dk310
title: Data from: Short-term changes in the structure of termite assemblages associated with slash-and-burn agriculture in Côte d'Ivoire

description: Termites are major decomposers in tropical regions and play critical roles
 in many soil-related processes. Studies conducted in Asia and the
 Neotropics suggest that habitat modification can strongly affect termite
 assemblages, but data on termite communities from forests in Africa,
 especially West Africa, are scarce. Here, we measured the short-term
 impact of slash-and-burn agriculture on termite assemblages in an
 agricultural region of central Côte d'Ivoire. We assessed termite
 diversity and relative abundance in four habitat types: secondary forest,
 cleared forest, burned forest, and crop fields. The secondary forest had
 higher species richness compared with the other habitats, but all habitat
 types had similar assemblage structures. Fungus-growing termites were the
 most abundant feeding group in all habitats. Soil feeders were most
 abundant in secondary forest, intermediately abundant in cleared and
 burned forests, and almost entirely absent in crop fields. Wood-feeding
 species showed clear responses to burning; their abundances decreased
 after fire. We conclude that slash-and-burn agriculture does not appear to
 severely erode the diversity of termite assemblages. This could be due to
 the dominance of ecologically versatile fungus growers or to the
 relatively long time between clearing and burning. However, forest
 clearing negatively affects soil feeders, with the Apicotermitinae most
 affected by canopy loss.
description: FIGURE
 S1Monthly precipitation
 and temperature in the study area over the previous decade (1999–2008) and
 during the two years of the study (2009 and 2010) (Data source: Station of
 Geophysics of Lamto)FIGURE
 S2Map
 of the study area showing the three villages where samplings were made.
 This picture was digitalized from a panchromatic picture of the SPOT 5
 with 5-m spatial resolution (Goetze & Koulibaly, unpublished
 data)
DOI: 10.5061/dryad.55jq5
title: Data from: Risks of postextraction bleeding after receiving direct oral anticoagulants or warfarin: a retrospective cohort study

description: Objective: The effect of direct oral anticoagulants (DOACs) on the risk of
 bleeding after tooth extraction remains unclear. This study aimed to
 evaluate the incidence of post-extraction bleeding among patients who
 received DOAC and vitamin K antagonists (VKAs), such as warfarin. Design:
 This study was a retrospective cohort analysis. Incidence rates and
 propensity score matched regression models were used to compare the risks
 of bleeding after tooth extractions involving DOACs and VKAs. Setting: The
 study took place in a single university hospital in Japan. Participants:
 Between April 2013 and April 2015, 543 patients underwent a total of 1,196
 simple tooth extractions. Primary outcome measure: The primary outcome
 measure was the occurrence of post-extraction bleeding, which was defined
 as bleeding that could not be stopped by biting down on gauze and required
 medical treatment between 30 minutes and 7 days after the extraction.
 Results: A total of 1,196 tooth extractions (634 procedures) in 541
 patients fulfilled the study criteria, with 72 extractions (41 procedures)
 involving DOACs, 100 extractions (50 procedures) involving VKAs, and 1,024
 extractions (543 procedures) involving no anticoagulants. The incidences
 of post-extraction bleeding per tooth for the DOAC, VKA, and no
 anticoagulant extractions were 10.4%, 12.0%, and 0.9%, respectively. The
 incidences of post-extraction bleeding per procedure for DOACs, VKAs, and
 no anticoagulants were 9.7%, 10.0%, and 1.1%, respectively. In comparison
 to the VKA extractions, the DOAC extractions did not significantly
 increase the risk of post-extraction bleeding (odds ratio: 0.69; 95%
 confidence intervals: 0.24–1.97; p=0.49). Conclusions: The risk of
 post-extraction bleeding was similar for DOAC and VKA extractions.
description: bmjopen-2017-015952R2data
DOI: 10.5061/dryad.2k462
title: Data from: Early warning signals and the prosecutor's fallacy

description: Early warning signals have been proposed to forecast the possibility of a
 critical transition, such as the eutrophication of a lake, the collapse of
 a coral reef or the end of a glacial period. Because such transitions
 often unfold on temporal and spatial scales that can be difficult to
 approach by experimental manipulation, research has often relied on
 historical observations as a source of natural experiments. Here, we
 examine a critical difference between selecting systems for study based on
 the fact that we have observed a critical transition and those systems for
 which we wish to forecast the approach of a transition. This difference
 arises by conditionally selecting systems known to experience a transition
 of some sort and failing to account for the bias this introduces—a
 statistical error often known as the prosecutor's fallacy. By
 analysing simulated systems that have experienced transitions purely by
 chance, we reveal an elevated rate of false-positives in common warning
 signal statistics. We further demonstrate a model-based approach that is
 less subject to this bias than those more commonly used summary
 statistics. We note that experimental studies with replicates avoid this
 pitfall entirely.
description: Data for Figure 2 (part
 1)Figure2_dat.csvData for Figure 2 (part 2)Data for figure 2 (part 2), see README.RmdFigure2_nulldat.csvData for Figure 3 (part 1)See READMEFigure3_dat.csvData for Figure 3 (part 2)See ReadmeFigure3_nulldat.csvCode for Figure 1Code to reproduce Figure 1Figure1.RmdCode for Figure 2Written as a knitr dynamic document, contains both code and documentation.Figure2.RmdCode for Figure 3Written as a knitr dynamic document, contains both code and documentation.Figure3.Rmd
DOI: 10.5061/dryad.89pd54f
title: Data from: Autofertility and self-compatibility moderately benefit island colonization of plants

description: Aim: The current geographical distribution of species largely reflects
 colonization success after natural long‐distance dispersal or introduction
 by humans. Plants with selfing ability should have an advantage when
 establishing on islands where mates and pollinators are limited
 (Baker's law). However, high percentages of dioecious and
 self‐incompatible species have been reported for some islands, possibly
 resulting from post‐colonization evolution. Given that such evolution is
 less likely to apply to alien species recently introduced to islands by
 humans, tests of Baker's law on islands need to consider both native
 and naturalized alien species. Location: Global. Time period: Undefined.
 Major taxa studied: Angiosperms. Methods: To test whether the colonization
 of islands is associated with selfing ability (self‐compatibility and
 autofertility), we combined three comprehensive global databases: one on
 breeding systems of species, one on island and mainland distributions of
 native species and one on global naturalization of alien plants. We
 assigned each of a total of 1,752 species, from 161 angiosperm families,
 as mainland species, island colonists and/or island endemics (i.e.,
 species that are restricted to islands). To assess potential relationships
 between island occurrence and selfing ability of species, we used
 multinomial logistic regressions. Results: We found that species with high
 selfing ability were slightly more likely to be island colonist than
 mainland species. However, selfing ability did not increase the likelihood
 of being an island endemic in contrast to mainland species. Among island
 colonists, selfing ability did not differ between species on oceanic and
 on continental islands or between species native to islands and
 naturalized on islands. Main conclusions: We performed a comprehensive
 test of Baker's law by considering many angiosperm families, using
 continuous metrics of self‐compatibility and autofertility and including
 both native and naturalized species. We provide global evidence that high
 selfing ability may foster island colonization of angiosperms.
description: Data used to test
 whether selfing ability benefit island colonization of
 plantsRazanajatovo_Selfing_ability_and_islands_data.csv
DOI: 10.5061/dryad.k1jj600
title: Data from: Outcomes of systolic heart failure patients presenting with sepsis to the emergency department of a tertiary hospital: a retrospective chart review study from Lebanon

description: Objectives: Congestive heart failure (CHF) patients may be at a higher
 risk of mortality from sepsis than patients without CHF due to
 insufficient cardiovascular reserves during systemic infections. . The aim
 of this study is to compare sepsis-related mortality between CHF and
 non-CHF patients in patients presenting to a tertiary medical center.
 Design: A single centre, retrospective, cohort study. Setting: Conducted
 in an academic ED between January 2010 and January 2015. Patients’ charts
 were queried via the hospital’s electronic system. Patients with a
 diagnosis of sepsis were included. Descriptive analysis was performed on
 the demographics, characteristics, and outcomes of septic patients of the
 study population. Participants: A total of 174 patients, of which 87 (50%)
 were CHF patients. Primary and secondary outcomes: The primary outcome of
 the study was in-hospital mortality. Secondary outcomes included intensive
 care unit (ICU), and hospital lengths of stay, and differences in
 interventions between the two groups. Results: CHF patients had a higher
 in-hospital mortality (57.5% vs 34.5%). Septic CHF patients had higher
 odds of death as compared to the control population (OR, 2.45; 95% CI,
 1.22-4.88). Secondary analyses showed that CHF patients had lower
 instances of bacteremia upon presentation to the ED (31.8% vs 46.4%). They
 had less IV fluid requirements in first 24 hours (2.75 ± 2.28 L vs 3.67 ±
 2.82 L, p-value=0.038), had a higher rate of intubation in the ED (24.2%
 vs 10.6%, p-value=0.025) and required more dobutamine in the first 24
 hours (16.1% vs 1.1%, p-value&lt;0.001). Emergency department length
 of stay was found to be lower in CHF patients (15.12 ± 24.45 hours vs
 18.17 ± 26.13 hours, p-value=0.418) and they were more likely to be
 admitted to the ICU (59.8% vs 48.8%, p-value=0.149). Conclusion: Septic
 patients with CHF experienced an increased hospital mortality compared to
 patients without CHF.
description: Data_heart_failureRaw data of the systolic heart failure and sepsis
DOI: 10.5061/dryad.ss0k19q
title: Data from: Subsistence practices, past biodiversity, and anthropogenic impacts revealed by New Zealand-wide ancient DNA survey

description: New Zealand’s geographic isolation, lack of native terrestrial mammals,
 and Gondwanan origins make it an ideal location to study evolutionary
 processes. However, since the archipelago was first settled by humans (c.
 1280 AD), its unique biodiversity has been under pressure, and today an
 estimated 49% of the terrestrial avifauna is extinct. Current efforts to
 conserve the remaining fauna rely on a better understanding of the
 composition of past ecosystems, as well as the causes and timing of past
 extinctions. The exact temporal and spatial dynamics of New Zealand’s
 extinct fauna, however, can be difficult to interpret, as only a small
 proportion of animals are preserved as morphologically identifiable
 fossils. Here, we conduct the first large-scale genetic survey of
 sub-fossil bone assemblages to elucidate the impact of humans on the
 environment in New Zealand. By genetically identifying over 5000
 non-diagnostic bone fragments from archaeological and palaeontological
 sites, we reconstruct a rich faunal record of 111 species of birds, fish,
 reptiles, amphibians, and marine mammals. We report evidence of five whale
 species rarely reported from New Zealand archaeological middens, and
 characterise new extinct lineages of leiopelmatid frog (Leiopelma sp.) and
 kākāpō (Strigops habroptilus) haplotypes lost from the gene pool. Taken
 together, this molecular audit of New Zealand’s sub-fossil record not only
 contributes to our understanding of past biodiversity and pre-contact
 Māori subsistence practices, but also provides a more nuanced snapshot of
 anthropogenic impacts on native fauna following first human arrival.
description: Seersholm2018_NZ_BBMObitools style filtered OTUs, assigned to the lowest possible taxonomic node based Blast hits. Reads with a best hit below 95% similarity to the database have not been assigned to a node (taxon_name=NA).
DOI: 10.5061/dryad.705
title: Data from: Unraveling the evolutionary radiation of the families of the Zingiberales using morphological and molecular evidence

description: The Zingiberales are a tropical group of monocotyledons that includes the
 bananas, gingers and their relatives. The phylogenetic relationships among
 the currently recognized eight families are investigated here using
 parsimony and maximum likelihood analyses of four character sets: 1)
 morphological features; and sequence data of the 2) chloroplast rbcL gene;
 3) chloroplast atpB gene; and 4) nuclear 18S rDNA gene. Outgroups for the
 analyses include the closely related Commelinaceae + Philydraceae +
 Haemodoraceae + Pontederiaceae + Hanguanaceae as well as seven more
 distantly related monocots and paleoherbs. Only slightly different
 estimates of evolutionary relationships result from the analysis of each
 character set. The morphological data yield a single fully resolved most
 parsimonious tree. None of the molecular data sets alone completely
 resolves interfamilial relationships. The analyses of the combined
 molecular data set provide more resolution than individual genes and the
 addition of the morphological data provides a well-supported estimate of
 phylogenetic relationships: (Musaceae ((Strelitziaceae, Lowiaceae)
 (Heliconiaceae ((Zingiberaceae, Costaceae) (Cannaceae, Marantaceae))))).
 Evidence from branch lengths in the parsimony analyses and from the fossil
 record suggest that the Zingiberales originated in the early Cretaceous
 and underwent a rapid radiation in the mid-Cretaceous by which time most
 extant family lineages had diverged.
description: Kress et al Data
 SetatpB, rbcL, 18S, and
 morphology for Zingiberales.Kress.nexus
DOI: 10.5061/dryad.jf7sn
title: Data from: Short-term variations in gene flow related to cyclic density fluctuations in the common vole

description: In highly fluctuating populations with complex social systems genetic
 patterns are likely to vary in space and time due to demographic and
 behavioural processes. Cyclic rodents are extreme examples of
 demographically instable populations that often exhibit strong social
 organisation. In such populations, kin structure and spacing behaviour may
 vary with density fluctuations and impact both the composition and spatial
 structure of genetic diversity. In this study, we analysed the multiannual
 genetic structure of a cyclic rodent, Microtus arvalis, using a sample of
 875 individuals trapped over three complete cycles (from 1999 to 2007) and
 genotyped at 10 microsatellite loci. We tested the predictions that
 genetic diversity and gene flow intensity vary with density fluctuations.
 We found evidences for both spatial scale-dependant variations in genetic
 diversity and higher gene flow during high density. Moreover,
 investigation of sex-specific relatedness patterns revealed that, although
 dispersal is biased toward males in this species, distances moved by both
 sexes were lengthened during high density. Altogether, these results
 suggest that an increase of migration with density allows to restore the
 local loss of genetic diversity occurring during low density. We then
 postulate that this change in migration results from local competition,
 which enhances female colonisation of empty spaces and male dispersal
 among colonies.
description: genotypic_dataGenotypic data (genepop format) of the 875 individuals sampled in the course of the study. Spatial coordinates (Lambert II), sector of origin, year of sampling and sex are provided for each individualvole-abundance_dataRaw data of common vole abundance (number of caught per trap line)
DOI: 10.5061/dryad.sn559
title: Data from: The contrasting role of male relatedness in different mechanisms of sexual selection in red junglefowl

description: In structured populations, competition for reproductive opportunities
 should be relaxed among related males. The few tests of this prediction
 often neglect the fact that sexual selection acts through multiple
 mechanisms, both before and after mating. We performed experiments to
 study the role of within-group male relatedness across pre- and
 postcopulatory mechanisms of sexual selection in social groups of red
 junglefowl, Gallus gallus, in which two related males and one unrelated
 male competed over females unrelated to all the males. We confirm
 theoretical expectations that, after controlling for male social status,
 competition over mating was reduced among related males. However, this
 effect was contrasted by other sexual selection mechanisms. First, females
 biased male mating in favor of the unrelated male, and might also favor
 his inseminations after mating. Second, males invested more -rather than
 fewer- sperm in postcopulatory competition with relatives. A number of
 factors may contribute to explain this counterintuitive pattern of sperm
 allocation, including trade-offs between male investment in pre- vs
 postcopulatory competition, differences in the relative relatedness of
 pre- vs. postcopulatory competitors, and female bias in sperm utilization
 in response to male relatedness. Collectively, these results reveal that
 within-group male relatedness may have contrasting effects in different
 mechanisms of sexual selection.
description: 1ia Proportion of
 Attempts InterruptedDatasheet names follow
 that of the results Table: 1ia Proportion of Attempts
 Interrupted1ib Interruption
 AggressionDatasheet names follow
 that of the results Table: 1ib Interruption Aggression1ic No. of Aggressive
 EventsDatasheet names follow
 that of the results Table: 1ic No. of Aggressive Events1id Courtship Counts and
 1ii Female SolicitationDatasheet names follow
 that of the results Table: 1id Courtship Counts and 1ii Female
 Solicitation1ie Mating
 AttemptsDatasheet names follow
 that of the results Table: 1ie Mating Attempts1ii Female Resistence
 and Proportion resistedDatasheet names follow
 that of the results Table: 1ii Female Resistence and Proportion
 resisted1iii Mating
 SuccessDatasheet names follow
 that of the results Table: 1iii Mating Success2ia - c Male
 Postcopulatory ResponseDatasheet names follow
 that of the results Table: 2ia - c Male Postcopulatory
 Response2i
 a-c Male Postcopulatory
 Response.csv2iia & b Sperm
 EjectionDatasheet names follow
 that of the results Table: 2iia & b Sperm Ejection2iia & 2iib Sperm
 Ejection.csv2iic PVL
 CountsDatasheet names follow
 that of the results Table: 2iic PVL Counts
DOI: 10.15468/5g58yt
title: A new species of Bactrocera Macquart reared from Solanum khasianum Clarke in northern India and a new synonym

description: This dataset contains the digitized treatments in Plazi based on the original journal article Singh, Maneesh Pal, Gupta, Divender, Hancock, David Lawrence, Sharma, Isha, Sharma, Prem Lal (2023): A new species of Bactrocera Macquart reared from Solanum khasianum Clarke in northern India and a new synonym. Zootaxa 5380 (6): 526-540, DOI: 10.11646/zootaxa.5380.6.2, URL: https://www.mapress.com/zt/article/download/zootaxa.5380.6.2/52406AbstractA new species of genus Bactrocera Macquart, Bactrocera (Bactrocera) prabhakari Maneesh, Gupta & Hancock, sp. n., is described from Himachal Pradesh, Northern India, reared from Solanum khasianum Clarke commonly known as medicinal solanum or Dutch eggplant. This species resembles Bactrocera latifrons (Hendel) and an updated key to Indian fruit flies of subgenus Bactrocera Macquart is provided. Bactrocera yoshimotoi (Hardy) (= B. luteicinctuta Ito, syn. nov.) in newly recorded from Himachal Pradesh in northern India and variability in B. scutellaris (Bezzi) is discussed together with illustrations.
DOI: 10.5061/dryad.br874
title: Data from: Context-dependent expression of sexual dimorphism in island populations of the common wall lizard (Podarcis muralis)

description: The condition-dependent sexual dimorphism model explains the evolution and
 maintenance of sexual dimorphism in traits targeted by sexual selection,
 and predicts that the magnitude of sexual dimorphism depends on the
 variability of individual condition, male traits being more variable than
 female corresponding traits. Most convincing examples concern insects,
 while studies among vertebrates are scanty because manipulating condition
 often is not possible, and the time to reach sexual maturity may be too
 long. Islands offer a unique opportunity to compare how the environment
 affects the expression of sexual dimorphism, since they represent ‘natural
 experimental sets’ in which different populations of the same species may
 experience alternative environmental constraints. We investigated the
 occurrence of context-dependent expression in sexual dimorphism of head
 shape in insular populations of the common wall lizards (Podarcis muralis)
 inhabiting the Tuscan Archipelago (Tyrrhenian Sea). Alternative models
 were formulated: H0 assumes that the sexual dimorphism is uninfluenced by
 islands, H1 assumes the only effect of phylogeny, H2A and H2B account for
 the biogeography of the archipelago (island size and distance from the
 mainland), while H3 assumes island-specific effects on sexual dimorphism.
 Models were compared using Akaike's information criterion adjusted
 for multivariate analyses. All hypotheses performed better than H0, but H3
 largely outperformed all other alternative hypotheses, indicating that
 environmental features of islands play an additive effect to ontogenetic,
 biogeographic and genetic factors in defining variation in head shape
 sexual dimorphism. Our results support the hypothesis of a
 context-dependent sexual dimorphism in common wall lizards
description: island_habitatHabitat features of each islandLandmark configurations of specimensRough landmark configurations of all specimensdorsotot.TPSdorso_covariate