cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7619545
title: The Long-term, High-accuracy and Seamless Soil Moisture (LHS-SM) dataset over the Qinghai-Tibet Plateau: part 1 (2001-2010)

description: Soil moisture (SM) is a vital variable in the water-energy cycle and characterizing its spatiotemporal dynamics is crucial for understanding the impacts of climate change. Although substantial efforts have been devoted to derive SM data at fine scale, there is still a research gap in obtaining the long-term, high-accuracy and high-resolution SM data over the Qinghai-Tibet Plateau (QTP) due to its complex topography. Therefore, this study generated the long-term, high-accuracy and seamless soil moisture (LHS-SM) dataset over the QTP during 2001-2020 using a two-step downscaling method. First the daily SM data from the Climate Change Initiative program of the European Space Agency (ESA CCI) was downscaled to 1km utilizing five machine learning approaches. Then a dynamic data merging method that considers the spatiotemporal nonstationary error was applied to derive the final LHS-SM data. Results indicated that LHS-SM data exhibited satisfying accuracy (mean R = 0.55, ubRMSE = 0.049 m³/m³) and certain improvement to the ESA CCI SM data both at station and network scales. The dataset can be used for various regional hydrology, meteorology, ecological analysis and modeling.
description: {"references": ["Shangguan, Y., Min, X., and Shi, Z.: Inter-comparison and integration of different soil moisture downscaling methods over the Qinghai-Tibet Plateau, Journal of Hydrology, 617, 129014, https://doi.org/10.1016/j.jhydrol.2022.129014, 2023."]}
DOI: 10.5281/zenodo.7619544
title: The Long-term, High-accuracy and Seamless Soil Moisture (LHS-SM) dataset over the Qinghai-Tibet Plateau: part 1 (2001-2010)

description: Soil moisture (SM) is a vital variable in the water-energy cycle and characterizing its spatiotemporal dynamics is crucial for understanding the impacts of climate change. Although substantial efforts have been devoted to derive SM data at fine scale, there is still a research gap in obtaining the long-term, high-accuracy and high-resolution SM data over the Qinghai-Tibet Plateau (QTP) due to its complex topography. Therefore, this study generated the long-term, high-accuracy and seamless soil moisture (LHS-SM) dataset over the QTP during 2001-2020 using a two-step downscaling method. First the daily SM data from the Climate Change Initiative program of the European Space Agency (ESA CCI) was downscaled to 1km utilizing five machine learning approaches. Then a dynamic data merging method that considers the spatiotemporal nonstationary error was applied to derive the final LHS-SM data. Results indicated that LHS-SM data exhibited satisfying accuracy (mean R = 0.55, ubRMSE = 0.049 m³/m³) and certain improvement to the ESA CCI SM data both at station and network scales. The dataset can be used for various regional hydrology, meteorology, ecological analysis and modeling.
description: {"references": ["Shangguan, Y., Min, X., and Shi, Z.: Inter-comparison and integration of different soil moisture downscaling methods over the Qinghai-Tibet Plateau, Journal of Hydrology, 617, 129014, https://doi.org/10.1016/j.jhydrol.2022.129014, 2023."]}
DOI: 10.5281/zenodo.8016135
title: The Long-term, High-accuracy and Seamless Soil Moisture (LHS-SM) dataset over the Qinghai-Tibet Plateau: part 2 (2011-2020)

description: Soil moisture (SM) is a vital variable in the water-energy cycle and characterizing its spatiotemporal dynamics is crucial for understanding the impacts of climate change. Although substantial efforts have been devoted to derive SM data at fine scale, there is still a research gap in obtaining the long-term, high-accuracy and high-resolution SM data over the Qinghai-Tibet Plateau (QTP) due to its complex topography. Therefore, this study generated the long-term, high-accuracy and seamless soil moisture (LHS-SM) dataset over the QTP during 2001-2020 using a two-step downscaling method. First the daily SM data from the Climate Change Initiative program of the European Space Agency (ESA CCI) was downscaled to 1km utilizing five machine learning approaches. Then a dynamic data merging method that considers the spatiotemporal nonstationary error was applied to derive the final LHS-SM data. Results indicated that LHS-SM data exhibited satisfying accuracy (mean R = 0.55, ubRMSE = 0.049 m³/m³) and certain improvement to the ESA CCI SM data both at station and network scales. The dataset can be used for various regional hydrology, meteorology, ecological analysis and modeling.
description: {"references": ["Shangguan, Y., Min, X., and Shi, Z.: Inter-comparison and integration of different soil moisture downscaling methods over the Qinghai-Tibet Plateau, Journal of Hydrology, 617, 129014, https://doi.org/10.1016/j.jhydrol.2022.129014, 2023."]}
DOI: 10.5281/zenodo.8016134
title: The Long-term, High-accuracy and Seamless Soil Moisture (LHS-SM) dataset over the Qinghai-Tibet Plateau: part 2 (2011-2020)

description: Soil moisture (SM) is a vital variable in the water-energy cycle and characterizing its spatiotemporal dynamics is crucial for understanding the impacts of climate change. Although substantial efforts have been devoted to derive SM data at fine scale, there is still a research gap in obtaining the long-term, high-accuracy and high-resolution SM data over the Qinghai-Tibet Plateau (QTP) due to its complex topography. Therefore, this study generated the long-term, high-accuracy and seamless soil moisture (LHS-SM) dataset over the QTP during 2001-2020 using a two-step downscaling method. First the daily SM data from the Climate Change Initiative program of the European Space Agency (ESA CCI) was downscaled to 1km utilizing five machine learning approaches. Then a dynamic data merging method that considers the spatiotemporal nonstationary error was applied to derive the final LHS-SM data. Results indicated that LHS-SM data exhibited satisfying accuracy (mean R = 0.55, ubRMSE = 0.049 m³/m³) and certain improvement to the ESA CCI SM data both at station and network scales. The dataset can be used for various regional hydrology, meteorology, ecological analysis and modeling.
description: {"references": ["Shangguan, Y., Min, X., and Shi, Z.: Inter-comparison and integration of different soil moisture downscaling methods over the Qinghai-Tibet Plateau, Journal of Hydrology, 617, 129014, https://doi.org/10.1016/j.jhydrol.2022.129014, 2023."]}
DOI: 10.6084/m9.figshare.23550259.v1
title: Additional file 3 of A genderful research world: rapid review, design, and pilot study of an interactive platform for curated sex and gender health research resources

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.23550259
title: Additional file 3 of A genderful research world: rapid review, design, and pilot study of an interactive platform for curated sex and gender health research resources

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.23550108
title: Fig 2 Raw data

description: Antigen identification of Ab 009
DOI: 10.6084/m9.figshare.23550272
title: Additional file 1 of Hemoglobinopathies, merozoite surface protein-2 gene polymorphisms, and acquisition of Epstein Barr virus among infants in Western Kenya

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.23550272.v1
title: Additional file 1 of Hemoglobinopathies, merozoite surface protein-2 gene polymorphisms, and acquisition of Epstein Barr virus among infants in Western Kenya

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.23550108.v3
title: Fig 2- Raw data

description: Antigen identification of Ab 009
DOI: 10.6084/m9.figshare.23550129
title: Fig 4 Raw data

description: In vivo and In vitro functional characterization of Ab 009
DOI: 10.6084/m9.figshare.23550129.v1
title: Fig 4 raw data

description: In vivo and In vitro functional characterization of Ab 009
DOI: 10.6084/m9.figshare.23550373
title: Additional file 1 of Victimization among adolescents of female sex workers: findings from the children of at-risk parents (CARP) study in Uganda

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.23550373.v1
title: Additional file 1 of Victimization among adolescents of female sex workers: findings from the children of at-risk parents (CARP) study in Uganda

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.23550394.v1
title: Additional file 2 of Eu(III) and Am(III) adsorption on aluminum (hydr)oxide minerals: surface complexation modeling

description: Additional file 2. Sorption Database
DOI: 10.6084/m9.figshare.23550394
title: Additional file 2 of Eu(III) and Am(III) adsorption on aluminum (hydr)oxide minerals: surface complexation modeling

description: Additional file 2. Sorption Database
DOI: 10.6084/m9.figshare.23550397
title: Additional file 3 of Eu(III) and Am(III) adsorption on aluminum (hydr)oxide minerals: surface complexation modeling

description: Additional file 3. Example Optimization File
DOI: 10.6084/m9.figshare.23550397.v1
title: Additional file 3 of Eu(III) and Am(III) adsorption on aluminum (hydr)oxide minerals: surface complexation modeling

description: Additional file 3. Example Optimization File
DOI: 10.6084/m9.figshare.23550171
title: Andrographolide Induces Protective Autophagy and Targeting DJ-1 Triggers ROS-induced Cell Death in Pancreatic Canceled Item

description: <em>Background:</em> Andrographolide (Andro), an extract of Andrographis paniculate, possesses diverse biologically active properties. However, the precise mechanisms and effects of Andro on pancreatic cancer (PC) remain unclear. <em>Methods:</em> The cytotoxic potential of Andro and underlying mechanism towards PC cells was investigated through in vitro experiments and a xenograft mouse model. PC cells were first subjected to varying concentrations of Andro. The reactive oxygen species (ROS) was assessed using flow cytometry and DCFH-DA staining. The apoptosis rate was detected by flow cytometry. Additionally, western blot was applied to evaluate the expression levels of cleaved-caspase-3, DJ-1, LC3-I, LC3-II, and p62. To further elucidate the involvement of ROS accumulation and autophagy, we employed N-acetylcysteine as a scavenger of ROS and 3-Methyladenine as an inhibitor of autophagy. <em>Results:</em> Andro demonstrated potent anti-proliferative effects on PC cells and induced apoptosis, both in vitro and in vivo. The cytotoxicity of Andro on PC cells was counteracted by DJ-1 overexpression. The reduction in DJ-1 expression caused by Andro led to ROS accumulation, subsequently inhibiting the growth of PC cells. Furthermore, Andro stimulated cytoprotective autophagy, thus weakening the antitumor effect. Pharmacological blockade of autophagy further enhanced the antitumor efficacy of Andro. <em>Conclusion: </em>Our study indicated that ROS accumulation induced by the DJ-1 reduction played a key role in Andro-mediated PC cell inhibition. Furthermore, the protective autophagy induced by the Andro in PC cells is a mechanism that needs to be addressed in future studies.
DOI: 10.6084/m9.figshare.23550171.v1
title: Andrographolide Induces Protective Autophagy and Targeting DJ-1 Triggers ROS-induced Cell Death in Pancreatic Canceled Item

description: <em>Background:</em> Andrographolide (Andro), an extract of Andrographis paniculate, possesses diverse biologically active properties. However, the precise mechanisms and effects of Andro on pancreatic cancer (PC) remain unclear. <em>Methods:</em> The cytotoxic potential of Andro and underlying mechanism towards PC cells was investigated through in vitro experiments and a xenograft mouse model. PC cells were first subjected to varying concentrations of Andro. The reactive oxygen species (ROS) was assessed using flow cytometry and DCFH-DA staining. The apoptosis rate was detected by flow cytometry. Additionally, western blot was applied to evaluate the expression levels of cleaved-caspase-3, DJ-1, LC3-I, LC3-II, and p62. To further elucidate the involvement of ROS accumulation and autophagy, we employed N-acetylcysteine as a scavenger of ROS and 3-Methyladenine as an inhibitor of autophagy. <em>Results:</em> Andro demonstrated potent anti-proliferative effects on PC cells and induced apoptosis, both in vitro and in vivo. The cytotoxicity of Andro on PC cells was counteracted by DJ-1 overexpression. The reduction in DJ-1 expression caused by Andro led to ROS accumulation, subsequently inhibiting the growth of PC cells. Furthermore, Andro stimulated cytoprotective autophagy, thus weakening the antitumor effect. Pharmacological blockade of autophagy further enhanced the antitumor efficacy of Andro. <em>Conclusion: </em>Our study indicated that ROS accumulation induced by the DJ-1 reduction played a key role in Andro-mediated PC cell inhibition. Furthermore, the protective autophagy induced by the Andro in PC cells is a mechanism that needs to be addressed in future studies.
DOI: 10.6084/m9.figshare.23550552
title: Supplementary Material

description: supplementmaterials
DOI: 10.6084/m9.figshare.23550552.v2
title: Supplementary Material

description: supplementmaterials
DOI: 10.6084/m9.figshare.23550552.v1
title: Supplementary Material

description: supplementmaterials
DOI: 10.5281/zenodo.8058464
title: The hydrous mechanism changes in enstatite with Al incorporation studied by DFT calculations

description: The data are crystallographic information files used in submitted paper "The hydrous mechanism changes in enstatite with Al incorporation studied by DFT calculations" by Sakurai et al..
DOI: 10.5281/zenodo.8058463
title: The hydrous mechanism changes in enstatite with Al incorporation studied by DFT calculations

description: The data are crystallographic information files used in submitted paper "The hydrous mechanism changes in enstatite with Al incorporation studied by DFT calculations" by Sakurai et al..
DOI: 10.6084/m9.figshare.23550642
title: text file

description: text
DOI: 10.6084/m9.figshare.23550642.v1
title: text file

description: text
DOI: 10.5281/zenodo.8059334
title: Dataset for Measurement report: Ion clusters as indicator for local new particle formation

description: Data for Measurement report: Ion clusters as indicator for local new particle formation. There are two files, negative_ion_concentrations.csv and positive_ion_concentrations.csv. The former (latter) includes absolute number concentrations for 1.87, 2.16, 2.49, and 2.88 nm negative (positive) ions. The unit for these concentrations is #/cm<sup>-3</sup>. Contact Santeri Tuovinen (santeri.tuovinen@helsinki.fi) for more details.
DOI: 10.5281/zenodo.8033284
title: Data for "Noise-induced servo errors in optical clocks utilizing Rabi interrogation"

description: Numerical simulation data used for figures in "Noise-induced servo errors in optical clocks utilizing Rabi interrogation" (Metrologia, DOI 10.1088/1681-7575/acdfd4). For some figures, also the analytical results are given. For description of data, see header rows. For details, see the corresponding figure captions in the article.
description: This work was supported by the project 20FUN01 TSCAC, which has received funding from the EMPIR programme co-financed by the Participating States and from the European Union's Horizon 2020 research and innovation programme. It was also supported by the Academy of Finland (REASON, decision 339821) and is part of the Academy of Finland Flagship Programme "Photonics Research and Innovation" (PREIN, decision 320168).
DOI: 10.5281/zenodo.8033283
title: Data for "Noise-induced servo errors in optical clocks utilizing Rabi interrogation"

description: Numerical simulation data used for figures in "Noise-induced servo errors in optical clocks utilizing Rabi interrogation" (Metrologia, DOI 10.1088/1681-7575/acdfd4). For some figures, also the analytical results are given. For description of data, see header rows. For details, see the corresponding figure captions in the article.
description: This work was supported by the project 20FUN01 TSCAC, which has received funding from the EMPIR programme co-financed by the Participating States and from the European Union's Horizon 2020 research and innovation programme. It was also supported by the Academy of Finland (REASON, decision 339821) and is part of the Academy of Finland Flagship Programme "Photonics Research and Innovation" (PREIN, decision 320168).
DOI: 10.5281/zenodo.6970451
title: Models and data

description: The content is no longer available.
DOI: 10.5281/zenodo.6970452
title: Models and data

description: The content is no longer available.
DOI: 10.18112/openneuro.ds004488.v1.1.1
title: A large-scale fMRI dataset for human action recognition
DOI: 10.6084/m9.figshare.23551287
title: Data for <strong>Alzheimer’s disease Interferonopathies.</strong>

description: The origin of Alzheimer's disease
DOI: 10.5281/zenodo.8062302
title: cattle rectum microbiome assembly after tall fescue treatment

description: We sequenced the 16 metagenomes using the whole-genome shotgun approach and generated 157 Gbp of metagenomic sequences. Through de novo assembly and annotation, we obtained a 13.1 Gbp reference contig assembly and identified 22 million microbial genes for cattle rectum microbiota. We discovered a significant reduction of microbial diversity after toxic seed treatment (P &lt; 0.01), suggesting dysbiosis of the microbiome. Six bacterial families and 31 species are significantly increased in the fecal microbiota (P-adjusted &lt; 0.05), including members of the top abundant rumen core taxa. This global elevation of rumen microbes in the rectum microbiota suggests a potential impairment of rumen microbiota under fescue toxicosis. Among these, Ruminococcaceae bacterium P7, an important species accounting for ~2% of rumen microbiota, was the most impacted with a 16-fold increase from 0.17% to 2.8% in feces (P &lt; 0.01). Functional enrichment analysis revealed that the overrepresented pathways shifted from energy metabolism to antimicrobial resistance and DNA replication after the consumption of toxic fescue seeds.
DOI: 10.5281/zenodo.8062301
title: cattle rectum microbiome assembly after tall fescue treatment

description: We sequenced the 16 metagenomes using the whole-genome shotgun approach and generated 157 Gbp of metagenomic sequences. Through de novo assembly and annotation, we obtained a 13.1 Gbp reference contig assembly and identified 22 million microbial genes for cattle rectum microbiota. We discovered a significant reduction of microbial diversity after toxic seed treatment (P &lt; 0.01), suggesting dysbiosis of the microbiome. Six bacterial families and 31 species are significantly increased in the fecal microbiota (P-adjusted &lt; 0.05), including members of the top abundant rumen core taxa. This global elevation of rumen microbes in the rectum microbiota suggests a potential impairment of rumen microbiota under fescue toxicosis. Among these, Ruminococcaceae bacterium P7, an important species accounting for ~2% of rumen microbiota, was the most impacted with a 16-fold increase from 0.17% to 2.8% in feces (P &lt; 0.01). Functional enrichment analysis revealed that the overrepresented pathways shifted from energy metabolism to antimicrobial resistance and DNA replication after the consumption of toxic fescue seeds.
DOI: 10.5281/zenodo.7602173
title: Chiral Phosphoric Acid Catalyzed Asymmetric Hydrolysis of Biaryl Oxazepines for the Synthesis of Axially Chiral Biaryl Amino Phenol Derivatives

description: This folder /DFT_structures/ contains the DFT-optimized geometries (in .xyz format together with the gas-phase energy, E) accompanying the paper "Chiral Phosphoric Acid Catalyzed Asymmetric Hydrolysis of Biaryl Oxazepines for the Synthesis of Axially Chiral Biaryl Amino Phenol Derivatives" Where conformers occur, they are always named from the lowest Gibbs energy to the highest in ascending order from c1 (sometimes omitted), c2, c3, ... This folder contains the following sub-folders: - /irc_movies/ contains movies of the IRC analyses for the rotational barrier TSs; - /structures/ contains the DFT-optimized structures
DOI: 10.5281/zenodo.7602163
title: Chiral Phosphoric Acid Catalyzed Asymmetric Hydrolysis of Biaryl Oxazepines for the Synthesis of Axially Chiral Biaryl Amino Phenol Derivatives

description: This folder /DFT_structures/ contains the DFT-optimized geometries (in .xyz format together with the gas-phase energy, E) accompanying the paper "Chiral Phosphoric Acid Catalyzed Asymmetric Hydrolysis of Biaryl Oxazepines for the Synthesis of Axially Chiral Biaryl Amino Phenol Derivatives" Where conformers occur, they are always named from the lowest Gibbs energy to the highest in ascending order from c1 (sometimes omitted), c2, c3, ... This folder contains the following sub-folders: - /irc_movies/ contains movies of the IRC analyses for the rotational barrier TSs; - /structures/ contains the DFT-optimized structures
DOI: 10.26036/cnp0002230
title: Dissecting aneuploidy phenotype by the synthesis and SCRaMbLE of synthetic disomic yeast

description: Aneuploidy compromises genomic stability, often leads to embryo viability, and is frequently associated with tumorigenesis and aging. Different aneuploid chromosome stoichiometry could lead to distinct transcriptomic and phenotypic changes, it is necessary to study aneuploidy in a tightly controlled genetic background. By exploiting the engineered SCRaMbLE system to the newly synthesized Sc2.0 chromosome VII (synVII), we built a synthetic disomic yeast and screened hundreds of SCRaMbLEd disomic yeasts with diverse chromosomal rearrangements of the megabase synVII. Phenotypic characterization and multi-omics analysis revealed that the fitness defect associated with aneuploidy could be restored by removing most extra copies of chromosome contents, or modifying specific regions in the target chromosome. These findings indicate that both chromosome copy number and chromosomal regions contribute to the aneuploidy-related phenotype.
DOI: 10.34740/kaggle/dsv/5985379
title: TS-EAMCET-LAST-RANK
DOI: 10.6084/m9.figshare.22179919.v2
title: ayu_dataset

description: Here is the data from 80 patients with SLE. This data serves as predictors to estimate the post-therapy SLEDAI with methylprednisolone pulse dose.
DOI: 10.34740/kaggle/dsv/5985423
title: TS-EAMCET-LAST-RANK
DOI: 10.34740/kaggle/dsv/5985621
title: Bigbasket Customer Analytics
DOI: 10.34740/kaggle/dsv/5985628
title: Natural Questions Answering
DOI: 10.15151/esrf-es-1252060953
title: XRF measurement of fixed, frozen hydrated mouse brain tissue

description: X-ray fluorescence imaging of vitrified sections of mouse brain tissue
DOI: 10.15151/esrf-es-1117958334
title: Crystallographic projects at Structural Biology Core Facility, JU - bringing the state of art support to the users in need.

description: Structural biology is very informative discipline providing strong support to virtually any biochemistry related project, however in many cases a lack of expertise is a barrier limiting application of structural biology techniques in the most exciting projects. Foundation of Structural Biology Core Facility (SBCF) at Jagiellonian University (JU, Krakow, Poland) was motivated by a need of providing a support of local experts to biochemists who could potentially benefit from detailed knowledge of their proteins of interest. SBCF is based on two pillars - cryo-EM and macromolecular crystallography. The later being conducted with the use of state-of-art beamlines at European synchrotron radiation sources. Since 2019 SBCF assisted in over 30 peer-reviewed publications. With this proposal we'd like to apply for an access to state of the art crystallographic bemlines at ESRF to help our user community to benefit from the brightest and most advanced X-ray sources in Europe.