cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.kj9zmz
title: Occurrence Download

description: A dataset containing 54323 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Diversidad de hormigas en ambientes urbanos de la ciudad de Santa Marta"
 ]
}

 The dataset includes 54323 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010702-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2d5dye
title: Occurrence Download

description: A dataset containing 224 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Grallaricula loricata (P.L.Sclater, 1857)"
 ]
}

 The dataset includes 224 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029858-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.o6kjqi
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Human Observation"
 ]
 },
 "Geometry POLYGON((71.89453 17.34896,136.58203 17.68422,135.52734 54.18713,72.59766 54.59651,71.89453 17.34896))",
 "TaxonKey is Ailanthus altissima (Mill.) Swingle",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029441-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fsyaqo
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 2012-2019",
 "TaxonKey is Gypsophila struthium subsp. struthium"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029441-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ysvkqe
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eugenia vrieseana (Miq.) Koord. & Valeton"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0153517-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fkv4p7
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "Geometry POLYGON((-105.44348 18.87718,-103.0968 18.87718,-103.0968 20.70474,-105.44348 20.70474,-105.44348 18.87718))",
 "HasGeospatialIssue is false",
 "PublishingOrg is ff90b050-c256-11db-b71b-b8a03c50a862",
 "TaxonKey is Agave angustifolia Haw."
 ]
}

 The dataset includes 80 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010688-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zpfa4b
title: Occurrence Download

description: A dataset containing 60705 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Anopheles collections in the health districts of Korhogo (Côte d'Ivoire) and Diébougou (Burkina Faso) (2016-2018)"
 ]
}

 The dataset includes 60705 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029831-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yxev0n
title: Occurrence Download

description: A dataset containing 4049 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panthera onca (Linnaeus, 1758)"
 ]
}

 The dataset includes 4049 records from 159 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029441-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7dc88s
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gynura integrifolia Gagnep."
 ]
}

 The dataset includes 33 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013494-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ta6wv2
title: Occurrence Download

description: A dataset containing 2743 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Suivi de l'expansion du Frelon asiatique (Vespa velutina) : données Frelon",
 "Geometry POLYGON((-16.64723 39.74421,19.64723 39.74421,19.64723 54.25579,-16.64723 54.25579,-16.64723 39.74421))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2004-2008"
 ]
}

 The dataset includes 2743 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0183411-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.coetyj
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Saprinus cupreus Erichson, 1834",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 104 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029442-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/df5cwl
title: PAN-00122564 - coin/coin-related, Filips de Schone (1482-1506), gulden

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00122564&lt;/p&gt;
description: Modified: 2025-10-24T08:22:12+02:00
DOI: 10.5281/zenodo.17861560
title: Using machine learning approaches to classify false positives generated by static analysis tools - An empirical study using small datasets - Replication Package

description: Static code analysis (SCA) tools are vital for software development to reduce the cost and time required for manual code reviews. It was established in our previous study that the best tools reported in the software engineering community return high false positive and false negative rates when used for code analysis. Several approaches have been taken in existing studies to identify false positive alarms generated by SCA tools, in helping to enhance the utility of these tools. However, existing studies reveal several limitations, chiefly among which is the tendency to focus on a limited number of alarm types or failing to evaluate a large breadth of machine-learning (ML) techniques comprehensively. This study has addressed this opportunity. We identified the best Code Representation Learning (CRL) techniques and ML algorithms for identifying false positives, where results show that performance outcomes vary based on the characteristics of the training datasets and the goal of the model building. Given the evidence established in this study, we recommend further investigations targeting specific configurations of advanced CRLs and ML Algorithms, including simple ML models.
DOI: 10.5281/zenodo.17861561
title: Using machine learning approaches to classify false positives generated by static analysis tools - An empirical study using small datasets - Replication Package

description: Static code analysis (SCA) tools are vital for software development to reduce the cost and time required for manual code reviews. It was established in our previous study that the best tools reported in the software engineering community return high false positive and false negative rates when used for code analysis. Several approaches have been taken in existing studies to identify false positive alarms generated by SCA tools, in helping to enhance the utility of these tools. However, existing studies reveal several limitations, chiefly among which is the tendency to focus on a limited number of alarm types or failing to evaluate a large breadth of machine-learning (ML) techniques comprehensively. This study has addressed this opportunity. We identified the best Code Representation Learning (CRL) techniques and ML algorithms for identifying false positives, where results show that performance outcomes vary based on the characteristics of the training datasets and the goal of the model building. Given the evidence established in this study, we recommend further investigations targeting specific configurations of advanced CRLs and ML Algorithms, including simple ML models.
DOI: 10.15468/dl.34jdzd
title: Occurrence Download

description: A dataset containing 7157 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Syllis armillaris",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7157 records from 133 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039730-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/ywffdi
title: PAN-00047006 - Roman lock-pin type D

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00047006&lt;/p&gt;
description: Modified: 2025-11-03T12:02:57+01:00
DOI: 10.15468/dl.cq7weq
title: Occurrence Download

description: A dataset containing 246048 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rosa pricei, Rosa roxburghii, Rosa rubus, Rosa rugosa, Ridsdalea daweishanensis)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 246048 records from 566 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039725-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xqk9w3
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Syllis bouvieri",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039731-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30828266
title: Supplementary Material for: Frontline pembrolizumab or methotrexate in elderly, frail, or cisplatin-ineligible patients with relapsed or metastatic squamous cell carcinoma of the head and neck (RM-HNSCC) – results of the randomized phase 2 study ELDORANDO (AIO-KHT-0115)

description: Background Elderly, frail, or cisplatin-ineligible patients with recurrent or metastatic squamous cell carcinoma of the head and neck (R/M HNSCC) have a poor prognosis. To date, no standard of care has been defined for this population.
Methods The randomised, open-label phase 2 study was conducted to determine whether first-line treatment with pembrolizumab (PEM) is superior to methotrexate (MTX) in elderly, frail, or cisplatin-ineligible patients with R/M HNSCC not amenable to local therapies. Patients were randomized 1:1 to receive PEM 200 mg q3w or MTX 40 mg/m2 IV weekly until disease progression or unacceptable toxicity. The primary end point was overall survival after 1 year (1YOS); secondary endpoints were time to failure of strategy (TTFS) at 1-year, objective response rate (ORR), progression free survival (PFS), and OS.
Results Of 100 planned participants, 47 (23 in the PEM and 24 in the MTX group) were enrolled. The trial was terminated prematurely. Efficacy did not differ between the treatment arms (1YOS 17.4% for PEM vs. 37.5% for MTX (p=0.12). ORR was 17.4% with PEM vs. 12.5% with MTX (p=0.70), TTFS at 1 year 91% vs. 100% (p=0.47), median PFS 1.8 vs. 2.7 months (p=0.83), and median OS 6.1 vs. 9.7 months (p=0.50), respectively. PD-L1 expression did not impact primary and secondary endpoints. Safety parameters favored PEM. 
Conclusion ELDORANDO failed to demonstrate benefit of PEM over MTX regarding 1YOS, ORR, PFS, or OS. The optimal treatment strategy for fragile patients remains to be determined.
DOI: 10.6084/m9.figshare.30828266.v1
title: Supplementary Material for: Frontline pembrolizumab or methotrexate in elderly, frail, or cisplatin-ineligible patients with relapsed or metastatic squamous cell carcinoma of the head and neck (RM-HNSCC) – results of the randomized phase 2 study ELDORANDO (AIO-KHT-0115)

description: Background Elderly, frail, or cisplatin-ineligible patients with recurrent or metastatic squamous cell carcinoma of the head and neck (R/M HNSCC) have a poor prognosis. To date, no standard of care has been defined for this population.
Methods The randomised, open-label phase 2 study was conducted to determine whether first-line treatment with pembrolizumab (PEM) is superior to methotrexate (MTX) in elderly, frail, or cisplatin-ineligible patients with R/M HNSCC not amenable to local therapies. Patients were randomized 1:1 to receive PEM 200 mg q3w or MTX 40 mg/m2 IV weekly until disease progression or unacceptable toxicity. The primary end point was overall survival after 1 year (1YOS); secondary endpoints were time to failure of strategy (TTFS) at 1-year, objective response rate (ORR), progression free survival (PFS), and OS.
Results Of 100 planned participants, 47 (23 in the PEM and 24 in the MTX group) were enrolled. The trial was terminated prematurely. Efficacy did not differ between the treatment arms (1YOS 17.4% for PEM vs. 37.5% for MTX (p=0.12). ORR was 17.4% with PEM vs. 12.5% with MTX (p=0.70), TTFS at 1 year 91% vs. 100% (p=0.47), median PFS 1.8 vs. 2.7 months (p=0.83), and median OS 6.1 vs. 9.7 months (p=0.50), respectively. PD-L1 expression did not impact primary and secondary endpoints. Safety parameters favored PEM. 
Conclusion ELDORANDO failed to demonstrate benefit of PEM over MTX regarding 1YOS, ORR, PFS, or OS. The optimal treatment strategy for fragile patients remains to be determined.
DOI: 10.15468/dl.krdvrg
title: Occurrence Download

description: A dataset containing 198674 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-64.30515 -31.28589, -64.31615 -31.28589, -64.31979 -31.29447, -64.30879 -31.29447, -64.31973 -31.32023, -64.30873 -31.32023, -64.32334 -31.35458, -64.31234 -31.35458, -64.31599 -31.36317, -64.29399 -31.36317, -64.29764 -31.37176, -64.28664 -31.37176, -64.29029 -31.38035, -64.27929 -31.38035, -64.28295 -31.38894, -64.27194 -31.38894, -64.2756 -31.39753, -64.26459 -31.39753, -64.27924 -31.43189, -64.26823 -31.43189, -64.2719 -31.44048, -64.26089 -31.44048, -64.26456 -31.44907, -64.25355 -31.44907, -64.25721 -31.45767, -64.2462 -31.45767, -64.25721 -31.48344, -64.2462 -31.48344, -64.24987 -31.49203, -64.20582 -31.49203, -64.20215 -31.48344, -64.16911 -31.48344, -64.17278 -31.49203, -64.15076 -31.49203, -64.14709 -31.48344, -64.13608 -31.48344, -64.13241 -31.47485, -64.1214 -31.47485, -64.11774 -31.46626, -64.09572 -31.46626, -64.09938 -31.47485, -64.08836 -31.47485, -64.07735 -31.47485, -64.07004 -31.45767, -64.10307 -31.45767, -64.09941 -31.44907, -64.11042 -31.44907, -64.09945 -31.4233, -64.11046 -31.4233, -64.10681 -31.41471, -64.11781 -31.41471, -64.10321 -31.38035, -64.12522 -31.38035, -64.12157 -31.37176, -64.13258 -31.37176, -64.12893 -31.36317, -64.13994 -31.36317, -64.13629 -31.35458, -64.14729 -31.35458, -64.14001 -31.33741, -64.16201 -31.33741, -64.15837 -31.32882, -64.16937 -31.32882, -64.16573 -31.32023, -64.17673 -31.32023, -64.18037 -31.32882, -64.23537 -31.32882, -64.23173 -31.32023, -64.24273 -31.32023, -64.23544 -31.30306, -64.26844 -31.30306, -64.2648 -31.29447, -64.2758 -31.29447, -64.27215 -31.28589, -64.28315 -31.28589, -64.27951 -31.2773, -64.30151 -31.2773, -64.30515 -31.28589))",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 198674 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039720-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/dcxe5s
title: PAN-00180899 - non-military uniform button

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00180899&lt;/p&gt;
description: Modified: 2025-10-13T12:50:05+02:00
DOI: 10.6084/m9.figshare.30818603
title: Chromosome-level genome assembly and annotation of largemouth bronze gudgeon (Coreius guichenoti)

description: <i>Coreius guichenoti</i>, mainly distributed in the upstream regions of the Yangtze River China, is currently on the brink of extinction and listed as national secondary protected animal. In this study, we aimed to obtain the chromosome-level genome of <i>C. guichenoti </i>using PacBio and Hi-C techniques. According to the PacBio sequencing, <i>C. guichenoti</i> genome was successfully assembled to 1100.1 Mb size, with a Contig N50 size of 25.0 Mb, and containing 731.0 Mb of repeats. Hi-C sequencing data was utilized for chromosome assembly and 25 chromosome sequences were ultimately yielded, with a total length of 1076.8 Mb. Moreover, a total of 22,506 protein-coding genes were predicted with average intron length of 2293 bp. Evolutionary analysis and divergence time prediction revealed that <i>C. guichenoti</i> was closely related to <i>C. heterodon</i> and they phylogenetically diverged from common ancestor ~20.7 million years ago (Mya), following the separation of Cyprinidae at 28.3 Mya. In the future, the utilization of comparative genomics research is important in elucidating the molecular mechanisms of Ichthyophthirius disease and ensuring the conservation of biological resources.
DOI: 10.6084/m9.figshare.30818603.v1
title: Chromosome-level genome assembly and annotation of largemouth bronze gudgeon (Coreius guichenoti)

description: <i>Coreius guichenoti</i>, mainly distributed in the upstream regions of the Yangtze River China, is currently on the brink of extinction and listed as national secondary protected animal. In this study, we aimed to obtain the chromosome-level genome of <i>C. guichenoti </i>using PacBio and Hi-C techniques. According to the PacBio sequencing, <i>C. guichenoti</i> genome was successfully assembled to 1100.1 Mb size, with a Contig N50 size of 25.0 Mb, and containing 731.0 Mb of repeats. Hi-C sequencing data was utilized for chromosome assembly and 25 chromosome sequences were ultimately yielded, with a total length of 1076.8 Mb. Moreover, a total of 22,506 protein-coding genes were predicted with average intron length of 2293 bp. Evolutionary analysis and divergence time prediction revealed that <i>C. guichenoti</i> was closely related to <i>C. heterodon</i> and they phylogenetically diverged from common ancestor ~20.7 million years ago (Mya), following the separation of Cyprinidae at 28.3 Mya. In the future, the utilization of comparative genomics research is important in elucidating the molecular mechanisms of Ichthyophthirius disease and ensuring the conservation of biological resources.
DOI: 10.15468/dl.cr9z8j
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Syllis columbretensis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 95 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039733-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uqdecf
title: Occurrence Download

description: A dataset containing 135585 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mauritania",
 "ClassKey is Aves",
 "HasCoordinate is true",
 "Year is greater than or equal to 2007",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 135585 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039723-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/fibwtp
title: PAN-00129059 - coin/coin-related, Constantinus I (306-337), voor Constantius II, nummus

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00129059&lt;/p&gt;
description: Modified: 2025-10-21T09:02:34+02:00
DOI: 10.25345/c5bz61n7v
title: MassIVE MSV000100156 - Phosphoproteomic analysis of Shank2 knock-in mouse model
title: Autism spectrum disorder (ASD) is a neurodevelopmental condition characterized by impaired social interaction and communication, and repetitive behaviors and restricted interests. A key unresolved question in ASD research is whether core pathological features remain reversible in adulthood. Several SHANK2 de novo mutations were discovered in ASD patients, and Shank2 has been identified as one of ASD risk genes with high confidence. It has been reported that Shank2 deficient mice display ASD like behaviors accompanied by NMDA receptor dysfunction. Here we newly generated a Shank2 knock in mouse model (expressed as "Shank2 FLEx") in which the timepoint of expression of Shank2 gene can be controlled with Cre recombinase. Shank2 deficient mice exhibited reduced social interaction and repetitive jumping. And adult restoration of Shank2 successfully rescued the social deficits and partially alleviated repetitive behaviors. At the synapse level, NMDAR hypofunction observed in mPFC pyramidal neurons of Shank2 deficient mice was normalized after adult Shank2 reinstatement. Proteomic analysis revealed a reversal of ASD-like patterns and robust recovery of synaptic alterations, including those associated with glutamatergic synaptic transmission. Phosphoproteomic profiling further demonstrated restoration of synapse related changes, particularly within postsynaptic proteins. At the systems level, Shank2 deficient mice showed reduced functional connectivity along with increased cerebral blood volume, most prominently within the PFC PTLp circuit. Adult Shank2 restoration ameliorated these network level abnormalities. Together, these findings demonstrate that behavioral, synaptic and network deficits in Shank2-deficient mice can be restored in adulthood through genetic intervention. This work provides strong evidence for the reversibility of ASD-related deficits and informs the potential therapeutic window for targeted genetic approaches in ASD.
DOI: 10.17026/ar/quvt63
title: PAN-00127704 - coin/coin-related, ?, nummus/aes II

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00127704&lt;/p&gt;
description: Modified: 2025-10-21T11:29:43+02:00