cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26050/wdcc/viking20xjrashort
title: VIKING20X-JRA-short: daily to multi-decadal ocean dynamics under JRA55-do atmospheric forcing

description: Project: Simulations with the 1/20° nested Atlantic Ocean ocean-sea-ice model VIKING20X - This project provides output for simulations conducted with the 1/20° nested Atlantic Ocean model configuration VIKING20X. It is performed under atmospheric forcing of the past decades, simulating the Atlantic Ocean circulation and hydrography variability on daily to multi-decadal timescales with a spatial resolution sufficient to capture mesoscale processes up to subarctic latitudes.

The model configuration is based on the Nucleus for European Modelling of the Ocean (NEMO; https://doi.org/10.5281/zenodo.1464816) code version 3.6, in combination with the Louvain la Neuve Ice Model (LIM2; https://doi.org/10.1029/97JC00480). The global domain at 1/4° resolution (ORCA025; https://doi.org/10.1007/s10236-006-0082-1) embeds the eddy-rich 1/20° nest using the two-way nesting technique Adaptive Grid Refinement In Fortran (AGRIF; https://doi.org/10.1016/j.cageo.2007.01.009). The nest covers the Atlantic Ocean from 33.5°S to ∼65°N. The atmospheric forcing data are applied through bulk formulae.

Key scientific values:
The “eddy-rich” coverage and the atmospheric forcing provide a configuration that realistically simulates various key aspects of wind-driven and thermohaline ocean dynamics such as large-scale structure of the mean flow, the distribution and strength of mesoscale eddies, western boundary current structures, or the Atlantic Meridional Overturning Circulation.
This configuration allows the possibility to fill observational gaps for the benefit of an improved understanding of the ocean as well as to include or use the high-resolution model output in disciplines like marine biology, marine traffic, ocean health and their societal and economic implications.

A full description and evaluation of the large-scale circulation is given in:
Biastoch et al. 2021, Regional Imprints of Changes in the Atlantic Meridional Overturning Circulation in the Eddy-rich Ocean Model VIKING20X, Ocean. Sci., 17, 1177–1211, https://doi.org/10.5194/os-17-1177-2021.
Summary: VIKING20X-JRA-short (Biastoch et al., 2021) is part of a series of VIKING20X simulations under JRA55-do atmospheric forcing. It is based on a restart from a pre-spun experiment in 1980 (VIKING20X-CORE; see Biastoch et al., 2021) and integrated for the period 1980 to 2019 in the framework of the RACE–Synthesis: Regional Atlantic Circulation and Global Change (https://race-synthese.de).
The applied atmospheric forcing JRA55-do (Tsujino et al., 2020, http://doi.org/10.5194/gmd-13-3643-2020) builds on the Japanese reanalysis product JRA-55 with improvements through the implementation of satellite and several other reanalysis products.
DOI: 10.4121/17876240.v1
title: Data repository for: Dynamical polarization of the fermion parity in a nanowire Josephson junction

description: Data repository for Dynamical polarization of the fermion parity in a nanowire Josephson junction.<br><br>Josephson junctions in InAs nanowires proximitized with an Al shell can host gate-tunable Andreev bound states. Depending on the bound state occupation, the fermion parity of the junction can be even or odd. Coherent control of Andreev bound states has recently been achieved within each parity sector, but it is impeded by incoherent parity switches due to excess quasiparticles in the superconducting environment. Here, we show that we can polarize the fermion parity dynamically using microwave pulses by embedding the junction in a superconducting LC resonator. We demonstrate polarization up to 94% ± 1% (89% ± 1%) for the even (odd) parity as verified by single shot parity-readout. Finally, we apply this scheme to probe the flux-dependent transition spectrum of the even or odd parity sector selectively, without any post-processing or heralding. <br><br><br><br><br>README CONTENTS (also included in the .ZIP)---------------------------------------------------------------------------# Data repository for Dynamical polarization of the fermion parity in a nanowire Josephson junction.<br>Manuscript located at https://arxiv.org/abs/2112.01936 <br><br>Authors: J.J. Wesdorp, L. Grunhaupt, A. Vaartjes, M. Pita-Vidal, A. Bargerbos, L.J. Splitthoff, P. Krogstrup, B. van Heck and G. de Lange.<br><br><br>This is a self-contained repository with the code that analyses the raw data (exported to .nc format).<br>Required packages are:<br>* matplotlib<br>* xarray <br>* h5py<br>* h5netcdf <br>* lmfit <br>* scipy<br>* numpy<br>* jupyter-notebook<br>* cv2 (only for figure S6)<br>* jupyter_contrib_nbextensions (recommended to see the table of content per notebook)<br><br>*An environment.yaml file is provided for conda based installations. The exact versions are denoted there.*<br><br><br>Folder structure:<br>- data : All data files used to generate the figures in the paper. The data is stored in netcdf format with h5netcdf as engine for loading with xarray. <br> - data/raw is the unprocessed data extracted from the qcodes measurement databases and converted to xarray file format. <br> - data/processed is where intermediate analysis results are stored<br>- figures : All figures used in the manuscript. <br> - figures/.../img: The raw output (separate panels) of the figure generation code is stored in the img folder <br>- figure generation : All code to generate the figures in self-contained jupyter notebooks<br> - figure generation/lib: custom code used for analysis and plotting of the data<br>
DOI: 10.15468/dl.rzhh9s
title: Occurrence Download

description: A dataset containing 631 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scotinella Banks, 1911"
 ]
}

 The dataset includes 631 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025320-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.btejpf
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bupleurum flavicans Boiss. & Heldr."
 ]
}

 The dataset includes 62 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072659-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8cjhpz
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Caprimulgus hirundinaceus von Spix, 1825"
 ]
}

 The dataset includes 22 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025320-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vhxq4g
title: Occurrence Download

description: A dataset containing 899 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Artibeus fraterculus Anthony, 1924"
 ]
}

 The dataset includes 899 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072682-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ursxht
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liophrurillus Wunderlich, 1992"
 ]
}

 The dataset includes 24 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025322-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2uqy34
title: Occurrence Download

description: A dataset containing 555 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Psidium guajava L."
 ]
}

 The dataset includes 555 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019292-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6c6znw
title: Occurrence Download

description: A dataset containing 157157 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taxus L."
 ]
}

 The dataset includes 157157 records from 1134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033247-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yscayy
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Robsonella fontaniana (d'Orbigny, 1835)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 63 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072651-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pmsqc8
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Physarum echinosporum Lister, 1899",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 109 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025322-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.45tggk
title: Occurrence Download

description: A dataset containing 1537 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chaunax pictus Lowe, 1846"
 ]
}

 The dataset includes 1537 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011695-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dg5qdg
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Romanchella perrieri (Caullery & Mesnil, 1897)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 15 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072722-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6ra1l4
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Drassinella Banks, 1904"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025323-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.44k4a8
title: Occurrence Download

description: A dataset containing 173 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acacia debilis Tindale"
 ]
}

 The dataset includes 173 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005377-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rv5jrt
title: Occurrence Download

description: A dataset containing 5408 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neotoma mexicana Baird, 1855"
 ]
}

 The dataset includes 5408 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025323-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7wmkgm
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gnidia virescens Wikstr."
 ]
}

 The dataset includes 125 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015338-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n3e25p
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Symplocos cernua Bonpl."
 ]
}

 The dataset includes 9 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064707-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zgyzjs
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Cheracebus torquatus (Hoffmannsegg, 1807)"
 ]
}

 The dataset includes 66 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072708-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yw3om1
title: Occurrence Download

description: A dataset containing 1084 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Adansonia digitata L."
 ]
}

 The dataset includes 1084 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025375-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jz7bfp
title: Occurrence Download

description: A dataset containing 227473 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Specimen)",
 "Country is Australia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Phalangeridae"
 ]
}

 The dataset includes 227473 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064713-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zv9xsu
title: Occurrence Download

description: A dataset containing 189 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Helichrysum monticola Hilliard"
 ]
}

 The dataset includes 189 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015349-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qw8iha
title: Occurrence Download

description: A dataset containing 1912 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crassostrea gigas (Thunberg, 1793)"
 ]
}

 The dataset includes 1912 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025325-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.92rsp5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthroleptis wageri FitzSimons, 1930",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.5808 -24.13,35.5909 -24.0715,30.5701 -24.0715,30.5701 -28.5786,32.4847 -28.5786,32.55 -28.5222,33.0346 -26.8668,32.9741 -26.7838,33.0415 -26.059,32.9304 -26.0011,32.7994 -26.1281,32.6834 -26.0015,32.813 -25.8728,32.8513 -25.7166,33.3048 -25.3731,35.1489 -24.6699,35.5808 -24.13))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031289-250525065834625/datasets/export for details.
DOI: 10.34740/kaggle/dsv/12111456
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.g9wpgq
title: Occurrence Download

description: A dataset containing 1065 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhogeessa parvula H.Allen, 1866"
 ]
}

 The dataset includes 1065 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031290-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q7qhqw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthroleptis wageri FitzSimons, 1930",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((31.8862 -21.3285,30.5701 -20.3186,30.5701 -24.0715,35.5909 -24.0715,35.6007 -24.0157,35.6007 -23.8125,35.4969 -23.7035,35.6007 -23.165,35.6007 -22.9702,35.227 -22.2482,34.6862 -21.6944,34.013 -21.3095,33.5 -21.1593,32.9675 -21.1092,32.4352 -21.1612,31.8862 -21.3285))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031291-250525065834625/datasets/export for details.
DOI: 10.15468/dl.hrzets
title: Occurrence Download

description: A dataset containing 1989 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Saltator cinctus J.T.Zimmer, 1943"
 ]
}

 The dataset includes 1989 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031293-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ccdtwj
title: Occurrence Download

description: A dataset containing 10284 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Habia cristata (Lawrence, 1875)"
 ]
}

 The dataset includes 10284 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031292-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hg48yp
title: Occurrence Download

description: A dataset containing 3441 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Urothraupis stolzmanni Taczanowski & Berlepsch, 1885"
 ]
}

 The dataset includes 3441 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031294-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bxf3b9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthroleptis wageri FitzSimons, 1930",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((27.1586 -33.5889,28.2048 -32.9007,25.5395 -32.9007,25.5395 -34.1098,25.6468 -34.1222,25.7787 -34.0734,25.7098 -33.9109,25.8639 -33.797,26.4806 -33.8473,27.1586 -33.5889))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031295-250525065834625/datasets/export for details.
DOI: 10.15468/dl.2p9t4v
title: Occurrence Download

description: A dataset containing 9202 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year is greater than or equal to 2000",
 "TaxonKey is Crotalus horridus Linnaeus, 1758"
 ]
}

 The dataset includes 9202 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031296-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10845611
title: Episode Metadata

description: This dataset is produced by Madison Bombardier in association with an article (10.1029/2024JB029159) published in Journal of Geophysical Research: Solid Earth. Please cite this repository and associated publication if any information therein is used.

Note that there is an updated version of this dataset (version v2) that resolves a minor error where two column labels were swapped.

Contact mlbombardier@protonmail.com for comments or questions.
DOI: 10.5281/zenodo.10845610
title: Episode Metadata

description: This dataset is produced by Madison Bombardier published in Journal of Geophysical Research: Solid Earth (https://doi.org/10.1029/2024JB029159)

Please contact mlbombardier@protonmail.com with comments or questions.

 

Update notes:

 13 April 2025 "episode_metadata_updated.csv" was uploaded. This corrects an error that swapped the headings of the 'startdis' and 'enddis' colums. As such, data in these columns remains the same but are associated with different headings now.