cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19944601.v1
title: Occurrence and molecular analysis of quarantine virus in lily cultivation areas in Brazil

description: Abstract: The objective of this work was to describe the occurrence of quarantine Tulip breaking virus (TBV, synonym Lily mottle virus - LMoV) and Lily symptomless virus (LSV), and their respective molecular analyses, to provide data for supporting TBV removal from the Brazilian A1 quarantine pest list, since this virus has spread among the main commercial lily crops in Brazil. The occurrence of these viruses was detected in 12 cultivation areas through multiplex reverse transcription (RT-PCR), using specific primers to genes encoding the respective coat proteins (CP). Eight fragments of 800 nucleotides (nt) obtained from the LMoV-infected lilies and nine fragments of 600 nt from LSV-infected lilies were sequenced. Phylogenetic tree reconstruction showed a robust branch containing the LMoV Brazilian sequences, other LMoV isolates, TBV, and Tulip band breaking virus, suggesting that all are LMoV isolates, although they are clustered into two subgroups. Phylogenetic analysis also showed a robust branch supporting all Brazilian and other LSV sequences, except for an LSV Japanese isolate. Recombination analyses also showed an LMoV recombinant isolate, whereas no recombination events were found among LSV isolates. Lily mottle virus is the prevalent virus in lily crops in Brazil, in single and mixed infections with LSV or Cucumber mosaic virus (CMV).
DOI: 10.6084/m9.figshare.19944601
title: Occurrence and molecular analysis of quarantine virus in lily cultivation areas in Brazil

description: Abstract: The objective of this work was to describe the occurrence of quarantine Tulip breaking virus (TBV, synonym Lily mottle virus - LMoV) and Lily symptomless virus (LSV), and their respective molecular analyses, to provide data for supporting TBV removal from the Brazilian A1 quarantine pest list, since this virus has spread among the main commercial lily crops in Brazil. The occurrence of these viruses was detected in 12 cultivation areas through multiplex reverse transcription (RT-PCR), using specific primers to genes encoding the respective coat proteins (CP). Eight fragments of 800 nucleotides (nt) obtained from the LMoV-infected lilies and nine fragments of 600 nt from LSV-infected lilies were sequenced. Phylogenetic tree reconstruction showed a robust branch containing the LMoV Brazilian sequences, other LMoV isolates, TBV, and Tulip band breaking virus, suggesting that all are LMoV isolates, although they are clustered into two subgroups. Phylogenetic analysis also showed a robust branch supporting all Brazilian and other LSV sequences, except for an LSV Japanese isolate. Recombination analyses also showed an LMoV recombinant isolate, whereas no recombination events were found among LSV isolates. Lily mottle virus is the prevalent virus in lily crops in Brazil, in single and mixed infections with LSV or Cucumber mosaic virus (CMV).
DOI: 10.6084/m9.figshare.19944602
title: Susceptibility of cedar to pest attack in seasonally deciduous forest

description: Abstract: The objective of this work was to evaluate the characteristics of cedar plants (Cedrela fissilis) attacked by pests, the resultant damages, and the conditions in which the damage was more pronounced. A census of cedar individuals was conducted by going through a total area of 5.55 hectares of native forest in the municipality of Silveira Martins, in the state of Rio Grande do Sul, Brazil. Cedars with total height greater than 15 cm and collar diameter less than 12 cm were measured, and their pest status was evaluated. Frequency histograms of the collar diameter were made, and the hypsometric relationship of attacked and healthy trees was evaluated by analysis of covariance. For the spatial analysis of individuals, maps of cedar density and maps for risk assessment of sawyer beetle and moth were made. Trees with the greatest probability of being attacked were those with collar diameter between 2 and 6 cm. The clearings and areas with low total density of trees were the most susceptible ones to attacks of the Hypsipyla grandella caterpillar, and locations with high density of individuals whose collar diameter is between 8 and 12 cm are the most susceptible ones to the attacks of Oncideres sp. larvae.
DOI: 10.6084/m9.figshare.19944602.v1
title: Susceptibility of cedar to pest attack in seasonally deciduous forest

description: Abstract: The objective of this work was to evaluate the characteristics of cedar plants (Cedrela fissilis) attacked by pests, the resultant damages, and the conditions in which the damage was more pronounced. A census of cedar individuals was conducted by going through a total area of 5.55 hectares of native forest in the municipality of Silveira Martins, in the state of Rio Grande do Sul, Brazil. Cedars with total height greater than 15 cm and collar diameter less than 12 cm were measured, and their pest status was evaluated. Frequency histograms of the collar diameter were made, and the hypsometric relationship of attacked and healthy trees was evaluated by analysis of covariance. For the spatial analysis of individuals, maps of cedar density and maps for risk assessment of sawyer beetle and moth were made. Trees with the greatest probability of being attacked were those with collar diameter between 2 and 6 cm. The clearings and areas with low total density of trees were the most susceptible ones to attacks of the Hypsipyla grandella caterpillar, and locations with high density of individuals whose collar diameter is between 8 and 12 cm are the most susceptible ones to the attacks of Oncideres sp. larvae.
DOI: 10.6084/m9.figshare.19944604.v1
title: Amblyseius largoensis in controlling red palm mite under semi-field conditions

description: Abstract: The objective of this work was to evaluate the efficiency of two Amblyseius largoensis (Acari: Phytoseiidae) populations in controlling Raoiella indica (Acari: Tenuipalpidae). The treatments were: release of A. largoensis from the island of La Réunion; release of A. largoensis from the state of Roraima, Brazil; and a control, without predator release. Initially, 20 predators were released per plant; three other releases were done at a rate of ten adults per plant, at 46, 135, and 156 days after the first release. The population densities were estimated every 20 days, during six months. Both A. largoensis populations evaluated are not sufficiently efficient to control the R. indica population.
DOI: 10.6084/m9.figshare.19944604
title: Amblyseius largoensis in controlling red palm mite under semi-field conditions

description: Abstract: The objective of this work was to evaluate the efficiency of two Amblyseius largoensis (Acari: Phytoseiidae) populations in controlling Raoiella indica (Acari: Tenuipalpidae). The treatments were: release of A. largoensis from the island of La Réunion; release of A. largoensis from the state of Roraima, Brazil; and a control, without predator release. Initially, 20 predators were released per plant; three other releases were done at a rate of ten adults per plant, at 46, 135, and 156 days after the first release. The population densities were estimated every 20 days, during six months. Both A. largoensis populations evaluated are not sufficiently efficient to control the R. indica population.
DOI: 10.6084/m9.figshare.19944607
title: Sarsina violascens spatial and temporal distributions affected by native vegetation strips in eucalyptus plantations

description: Abstract: The objective of this work was to evaluate spatial and temporal distributions of Sarsina violascens (Lepidoptera: Noctuidae: Lymantriinae) in two Eucalyptus cloeziana plantations, one with native vegetation strips (WNVS) and another without them (ONVS). Adults were collected with light traps, which were installed: inside an area of native vegetation (Cerrado), 100 m from the edge; at the contact zone between the native vegetation area and the E. cloeziana plantation; inside the E. cloeziana plantation, 250 m from the edge; at the central part of the native vegetation strip, around 500 m from the edge (WNVS) or in the contact zone between two E. cloeziana compartments (ONVS); and inside the E. cloeziana plantation, 500 m from the edge. The number of S. violascens adults collected was 240 in the system WNVS and 1,378 in the system ONVS. The lower number of individuals in the system WNVS was probably due to favored biological control provided by higher species richness with the use of native vegetation strips. These strips, intermingled with E. cloeziana plantations, allow a higher proportion of native forest in the landscape and can help to reduce S. violascens infestations.
DOI: 10.6084/m9.figshare.19944607.v1
title: Sarsina violascens spatial and temporal distributions affected by native vegetation strips in eucalyptus plantations

description: Abstract: The objective of this work was to evaluate spatial and temporal distributions of Sarsina violascens (Lepidoptera: Noctuidae: Lymantriinae) in two Eucalyptus cloeziana plantations, one with native vegetation strips (WNVS) and another without them (ONVS). Adults were collected with light traps, which were installed: inside an area of native vegetation (Cerrado), 100 m from the edge; at the contact zone between the native vegetation area and the E. cloeziana plantation; inside the E. cloeziana plantation, 250 m from the edge; at the central part of the native vegetation strip, around 500 m from the edge (WNVS) or in the contact zone between two E. cloeziana compartments (ONVS); and inside the E. cloeziana plantation, 500 m from the edge. The number of S. violascens adults collected was 240 in the system WNVS and 1,378 in the system ONVS. The lower number of individuals in the system WNVS was probably due to favored biological control provided by higher species richness with the use of native vegetation strips. These strips, intermingled with E. cloeziana plantations, allow a higher proportion of native forest in the landscape and can help to reduce S. violascens infestations.
DOI: 10.6084/m9.figshare.19944608
title: Adaptive value and competitive ability of ryegrass resistant and susceptible to iodosulfuron in competition with wheat

description: Abstract: The objective of this work was to identify and compare adaptive values of ryegrass (Lolium multiflorum) biotypes resistant and susceptible to the herbicide iodosulfuron and to evaluate their competitive ability with wheat (Triticum aestivum). To evaluate the adaptive value, the biotypes were sown in pots and collected every 10 days after emergence, up to 80 days. At each collection, height, leaf area, and dry matter of shoots were assessed, and, from these evaluations, indirect variables were calculated to compare the growth between the biotypes. The competitive ability was determined in a replacement series experiment, varying the proportion of the culture and of the competitor. The proportions tested were: 100:0 (wheat in pure stand), 75:25, 50:50, 25:75, and 0:100% (resistant or susceptible ryegrass biotype under pure stand); the evaluated variables were leaf area and dry matter. The results of the comparative studies of growth showed similarity between ryegrass biotypes resistant and susceptible to iodosulfuron, which does not characterize pleitropic effect due to resistance. Regarding competitive ability, interspecific competition is harmful to the resistant biotype, whereas, for the susceptible biotype, there is no effect of the competitor. The wheat crop shows greater competitive ability than resistant and susceptible ryegrass biotypes.
DOI: 10.6084/m9.figshare.19944608.v1
title: Adaptive value and competitive ability of ryegrass resistant and susceptible to iodosulfuron in competition with wheat

description: Abstract: The objective of this work was to identify and compare adaptive values of ryegrass (Lolium multiflorum) biotypes resistant and susceptible to the herbicide iodosulfuron and to evaluate their competitive ability with wheat (Triticum aestivum). To evaluate the adaptive value, the biotypes were sown in pots and collected every 10 days after emergence, up to 80 days. At each collection, height, leaf area, and dry matter of shoots were assessed, and, from these evaluations, indirect variables were calculated to compare the growth between the biotypes. The competitive ability was determined in a replacement series experiment, varying the proportion of the culture and of the competitor. The proportions tested were: 100:0 (wheat in pure stand), 75:25, 50:50, 25:75, and 0:100% (resistant or susceptible ryegrass biotype under pure stand); the evaluated variables were leaf area and dry matter. The results of the comparative studies of growth showed similarity between ryegrass biotypes resistant and susceptible to iodosulfuron, which does not characterize pleitropic effect due to resistance. Regarding competitive ability, interspecific competition is harmful to the resistant biotype, whereas, for the susceptible biotype, there is no effect of the competitor. The wheat crop shows greater competitive ability than resistant and susceptible ryegrass biotypes.
DOI: 10.6084/m9.figshare.19944610
title: Degree of phosphorus saturation threshold for minimizing P losses by runoff in cropland soils of Southern Brazil

description: Abstract The objective of this work was to assess the risk of phosphorus losses by runoff through an index based on the degree of P saturation (DPS), in cropland soils of Southern Brazil. Sixty-five highly representative cropland soils from the region were evaluated. Three labile P forms were measured (Mehlich-1, Mehlich-3, and ammonium oxalate), and four P sorption indexes were tested (phosphorus single sorption point and Fe+Al determined with the three extractors). Water-extractable P (WEP) was used as an index of P susceptibility to losses by surface runoff. The DPS was determined from the ratio between labile P and each sorption index. DPS values obtained from the ratio between Mehlich-1 P and the single P sorption point ranged from 1 to 25%, whereas those from Mehlich-1 P and Fe+Al (ammonium oxalate) ranged from 1 to 55%. All DPS types were highly correlated with WEP. From a practical stand point, the DPS obtained with both P and Fe+Al extracted with Mehlich-1 can be used to estimate the risk of P losses by runoff in soils of Southern Brazil.
DOI: 10.6084/m9.figshare.19944610.v1
title: Degree of phosphorus saturation threshold for minimizing P losses by runoff in cropland soils of Southern Brazil

description: Abstract The objective of this work was to assess the risk of phosphorus losses by runoff through an index based on the degree of P saturation (DPS), in cropland soils of Southern Brazil. Sixty-five highly representative cropland soils from the region were evaluated. Three labile P forms were measured (Mehlich-1, Mehlich-3, and ammonium oxalate), and four P sorption indexes were tested (phosphorus single sorption point and Fe+Al determined with the three extractors). Water-extractable P (WEP) was used as an index of P susceptibility to losses by surface runoff. The DPS was determined from the ratio between labile P and each sorption index. DPS values obtained from the ratio between Mehlich-1 P and the single P sorption point ranged from 1 to 25%, whereas those from Mehlich-1 P and Fe+Al (ammonium oxalate) ranged from 1 to 55%. All DPS types were highly correlated with WEP. From a practical stand point, the DPS obtained with both P and Fe+Al extracted with Mehlich-1 can be used to estimate the risk of P losses by runoff in soils of Southern Brazil.
DOI: 10.6084/m9.figshare.19944611
title: Indicators of water quality and land usage patterns in watersheds in the state of Paraná, Brazil

description: Abstract The objective of this work was to determine the relationship of water quality indicators with rainfall regime and land use patterns. Four watersheds and their respective permanent protected areas (APPs), sources of the Alagados reservoir, in the state of Paraná, Brazil were evaluated. Land use at basin level and in the APPs were mapped in a geographic information system environment, and the resulting patterns were evaluated as to their relation with the water quality index (IQA) and rainfall regime. Water quality decreased in the summer periods, when higher average rainfall and more intensive land management were present, with larger cultivated areas in the landscape. Total cultivated area in the APPs had negative effect on water quality. Differences in topography, geomorphology, and soil types, as well as their effect on land use patterns, were discussed as a potential explanation for the observed values of the IQA in each basin. The variability of the IQA patterns among watersheds, as well as the extreme values observed according to the season, highlights the demand for land use planning, particularly within the APPs, in order to ensure desirable patterns of water flow and quality in the wellspring.
DOI: 10.6084/m9.figshare.19944611.v1
title: Indicators of water quality and land usage patterns in watersheds in the state of Paraná, Brazil

description: Abstract The objective of this work was to determine the relationship of water quality indicators with rainfall regime and land use patterns. Four watersheds and their respective permanent protected areas (APPs), sources of the Alagados reservoir, in the state of Paraná, Brazil were evaluated. Land use at basin level and in the APPs were mapped in a geographic information system environment, and the resulting patterns were evaluated as to their relation with the water quality index (IQA) and rainfall regime. Water quality decreased in the summer periods, when higher average rainfall and more intensive land management were present, with larger cultivated areas in the landscape. Total cultivated area in the APPs had negative effect on water quality. Differences in topography, geomorphology, and soil types, as well as their effect on land use patterns, were discussed as a potential explanation for the observed values of the IQA in each basin. The variability of the IQA patterns among watersheds, as well as the extreme values observed according to the season, highlights the demand for land use planning, particularly within the APPs, in order to ensure desirable patterns of water flow and quality in the wellspring.
DOI: 10.6084/m9.figshare.19944616
title: Decomposition of sugarcane straw collected at different rates after mechanical harvest

description: Abstract The objective of this work was to determine the effect of collecting different levels of sugarcane straw on its decomposition on soil surface, after consecutive ratoons. The trial was conducted for two consecutive ratoons, using the sugarcane variety RB845210, testing four amounts of remaining straw after harvest: 11.3, 8.5, 5.7, and 2.8 Mg ha-1. Decomposition rates of biomass, carbon, nitrogen, cellulose, hemicellulose, and lignin were evaluated, as well as the C/N ratio and the mineralized quantities of C and N from the straw. The distinct levels of sugarcane straw aboveground do not alter decomposition rates, neither do they alter the mineralization of carbon, hemicellulose, cellulose, and lignin within the same ratoon. The straw decomposition process persists along the two ratoon cycles, regardless of the initial amount of straw on soil surface. The C/N ratio and lignin decay are adequate indicators for detecting differences of straw decomposition rates between the evaluated levels of straw, while hemicellulose and cellulose decay detects only differences in rates over time. In absolute terms, the lower the initial aboveground straw level, the higher the amounts of carbon and nitrogen mineralized, even if there are no differences in decomposition rates.
DOI: 10.6084/m9.figshare.19944616.v1
title: Decomposition of sugarcane straw collected at different rates after mechanical harvest

description: Abstract The objective of this work was to determine the effect of collecting different levels of sugarcane straw on its decomposition on soil surface, after consecutive ratoons. The trial was conducted for two consecutive ratoons, using the sugarcane variety RB845210, testing four amounts of remaining straw after harvest: 11.3, 8.5, 5.7, and 2.8 Mg ha-1. Decomposition rates of biomass, carbon, nitrogen, cellulose, hemicellulose, and lignin were evaluated, as well as the C/N ratio and the mineralized quantities of C and N from the straw. The distinct levels of sugarcane straw aboveground do not alter decomposition rates, neither do they alter the mineralization of carbon, hemicellulose, cellulose, and lignin within the same ratoon. The straw decomposition process persists along the two ratoon cycles, regardless of the initial amount of straw on soil surface. The C/N ratio and lignin decay are adequate indicators for detecting differences of straw decomposition rates between the evaluated levels of straw, while hemicellulose and cellulose decay detects only differences in rates over time. In absolute terms, the lower the initial aboveground straw level, the higher the amounts of carbon and nitrogen mineralized, even if there are no differences in decomposition rates.
DOI: 10.6084/m9.figshare.19944619.v1
title: Physical quality and organic matter fractions of an Alfisol under no-tillage

description: Abstract The objective of this work was to evaluate the physical quality and the organic matter fractions of an Alfisol soil under no-tillage (NT) with different deployment times in Southern Brazil. Soil samples were taken at the 0.00-0.03, 0.03-0.06, 0.06-0.10, and 0.10-0.20-m depths, for determining: total porosity (Pt); macroporosity (Ma); microporosity (Mi); soil penetration resistance (Rp); bulk density (Ds); macro- and microaggregates; mean weight diameter (MWD) of soil aggregates; total organic carbon content (TOC); the free light (FLL), light occluded (FLO), and heavy (FP) carbon fractions; carbon stocks (EstC); and the lability (ILC), stock (IEC), and carbon management (IMC) indexes. SPD deployment time increased Pt, Ma, and EstC, and decreased Mi, RP, Ds. NT promotes MWD, ILC, IEC, and IMC after five years of deployment, and, therefore, it improves soil physical quality.
DOI: 10.6084/m9.figshare.19944619
title: Physical quality and organic matter fractions of an Alfisol under no-tillage

description: Abstract The objective of this work was to evaluate the physical quality and the organic matter fractions of an Alfisol soil under no-tillage (NT) with different deployment times in Southern Brazil. Soil samples were taken at the 0.00-0.03, 0.03-0.06, 0.06-0.10, and 0.10-0.20-m depths, for determining: total porosity (Pt); macroporosity (Ma); microporosity (Mi); soil penetration resistance (Rp); bulk density (Ds); macro- and microaggregates; mean weight diameter (MWD) of soil aggregates; total organic carbon content (TOC); the free light (FLL), light occluded (FLO), and heavy (FP) carbon fractions; carbon stocks (EstC); and the lability (ILC), stock (IEC), and carbon management (IMC) indexes. SPD deployment time increased Pt, Ma, and EstC, and decreased Mi, RP, Ds. NT promotes MWD, ILC, IEC, and IMC after five years of deployment, and, therefore, it improves soil physical quality.
DOI: 10.5281/zenodo.5847180
title: Model data and namelists for Sterzinger et al. (2022) - "Do arctic mixed-phase clouds sometimes dissipate due to insufficient aerosol? Evidence from comparisons between observations and idealized simulations"

description: Model data and namelists for "Do arctic mixed-phase clouds sometimes dissipate due to insufficient aerosol? Evidence from comparisons between observations and idealized simulations" Horizontally averaged data is provided in NetCDF4 files (oliktok.nc, ascos.nc, summit.nc) for all output variables. Horizontally averaged vertical momentum flux is provided in a separate file for each simulation (*_vert_momentum_flux.nc files). Info on variables is provided by the RAMS model variable guide PDF available here. Model namelists are provided for each simulation (*_RAMSIN files). ASCOS initialization sounding info is provided within the ASCOS_RAMSIN file - initialization soundings are provided in SOUND_IN files.