cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.947228
title: Zoobenthos and sediments time series at List Reede, Sylt, Germany, in 2009

description: A shallow subtidal area in the northern Wadden Sea was monitored for sediment parameters and macrobenthic fauna using stratified random sampling of a grid of 50 sampling positions. Samples were collected with a Reineck-type box-corer of 0.02 m² surface area. Granulometric sediment composition was analysed from a sub-sample of each box-core using a diffraction laser particle-size analyser. Macrobenthos (sieved through 1 mm square meshes and fixed in buffered formalin solution) was counted, identified to species level, and the size of hard-shelled individuals measured. The amount of shell detritus was quantified as wet-weight in the benthos samples. This dataset contains the results of the three sampling dates in 2009.
DOI: 10.1594/pangaea.947229
title: Zoobenthos and sediments time series at List Reede, Sylt, Germany, in 2010

description: A shallow subtidal area in the northern Wadden Sea was monitored for sediment parameters and macrobenthic fauna using stratified random sampling of a grid of 50 sampling positions. Samples were collected with a Reineck-type box-corer of 0.02 m² surface area. Granulometric sediment composition was analysed from a sub-sample of each box-core using a diffraction laser particle-size analyser. Macrobenthos (sieved through 1 mm square meshes and fixed in buffered formalin solution) was counted, identified to species level, and the size of hard-shelled individuals measured. The amount of shell detritus was quantified as wet-weight in the benthos samples. This dataset contains the results of the three sampling dates in 2010.
DOI: 10.1594/pangaea.947230
title: Zoobenthos and sediments time series at List Reede, Sylt, Germany, in 2011

description: A shallow subtidal area in the northern Wadden Sea was monitored for sediment parameters and macrobenthic fauna using stratified random sampling of a grid of 50 sampling positions. Samples were collected with a Reineck-type box-corer of 0.02 m² surface area. Granulometric sediment composition was analysed from a sub-sample of each box-core using a diffraction laser particle-size analyser. Macrobenthos (sieved through 1 mm square meshes and fixed in buffered formalin solution) was counted, identified to species level, and the size of hard-shelled individuals measured. The amount of shell detritus was quantified as wet-weight in the benthos samples. This dataset contains the results of the five sampling dates in 2011.
DOI: 10.1594/pangaea.947212
title: Zoobenthos and sediments time series at List Reede, Sylt, Germany, in 2006

description: A shallow subtidal area in the northern Wadden Sea was monitored for sediment parameters and macrobenthic fauna using stratified random sampling of a grid of 50 sampling positions. Samples were collected with a Reineck-type box-corer of 0.02 m² surface area. Granulometric sediment composition was analysed from a sub-sample of each box-core using a diffraction laser particle-size analyser. Macrobenthos (sieved through 1 mm square meshes and fixed in buffered formalin solution) was counted, identified to species level, and the size of hard-shelled individuals measured. The amount of shell detritus was quantified as wet-weight in the benthos samples. This dataset contains the results of the nine sampling dates in 2006.
DOI: 10.1594/pangaea.947311
title: Size of hard-shelled individuals in the zoobenthos time series at List Reede, Sylt, Germany, in 2003

description: A shallow subtidal area in the northern Wadden Sea was monitored for sediment parameters and macrobenthic fauna using stratified random sampling of a grid of 50 sampling positions. Samples were collected with a Reineck-type box-corer of 0.02 m² surface area, macrobenthos (sieved through 1 mm square meshes and fixed in buffered formalin solution) was counted, identified to species level, and the size of hard-shelled individuals measured. This dataset contains the size measurements of 1629 individuals from the four sampling dates in 2003.
DOI: 10.1594/pangaea.947314
title: Size of hard-shelled individuals in the zoobenthos time series at List Reede, Sylt, Germany, in 2005

description: A shallow subtidal area in the northern Wadden Sea was monitored for sediment parameters and macrobenthic fauna using stratified random sampling of a grid of 50 sampling positions. Samples were collected with a Reineck-type box-corer of 0.02 m² surface area, macrobenthos (sieved through 1 mm square meshes and fixed in buffered formalin solution) was counted, identified to species level, and the size of hard-shelled individuals measured. This dataset contains the size measurements of 15918 individuals from the 10 sampling dates in 2005.
DOI: 10.1594/pangaea.947320
title: Size of hard-shelled individuals in the zoobenthos time series at List Reede, Sylt, Germany, in 2009

description: A shallow subtidal area in the northern Wadden Sea was monitored for sediment parameters and macrobenthic fauna using stratified random sampling of a grid of 50 sampling positions. Samples were collected with a Reineck-type box-corer of 0.02 m² surface area, macrobenthos (sieved through 1 mm square meshes and fixed in buffered formalin solution) was counted, identified to species level, and the size of hard-shelled individuals measured. This dataset contains the size measurements of 734 individuals from the three sampling dates in 2009.
DOI: 10.1594/pangaea.947321
title: Size of hard-shelled individuals in the zoobenthos time series at List Reede, Sylt, Germany, in 2010

description: A shallow subtidal area in the northern Wadden Sea was monitored for sediment parameters and macrobenthic fauna using stratified random sampling of a grid of 50 sampling positions. Samples were collected with a Reineck-type box-corer of 0.02 m² surface area, macrobenthos (sieved through 1 mm square meshes and fixed in buffered formalin solution) was counted, identified to species level, and the size of hard-shelled individuals measured. This dataset contains the size measurements of 672 individuals from the three sampling dates in 2010.
DOI: 10.1594/pangaea.937847
title: Palaemon serratus in the Sylt Rømø bight in 2020

description: Due to changing temperature regimes in the North- and the Wadden Sea, a fish survey in the Sylt Rømø bight (SRB) was established in 2007 for at least ten years. The aim is to investigate the Wadden Sea fish fauna with special interest in changes of migration behavior, species composition and feeding habits. Seven stations are sampled monthly inside the SRB. Two additional stations, one outside the bight, one close to the Danish border are sampled as references four times a year. For sampling a mini bottom trawl, total length 17 m, trawl opening 7 m, height 3 m with a mesh size of 36 mm in the wings, 16 mm in the mid part and 6 mm in the cod end is used. At every station one haul in the water column and another at the bottom are sampled, for 15 minutes at a speed of approximately 2 knots. The data will help to give a more detailed picture of food chains and energy flows inside the Wadden Sea.
DOI: 10.1594/pangaea.947331
title: Size of hard-shelled individuals in the zoobenthos time series at List Reede, Sylt, Germany, in 2019

description: A shallow subtidal area in the northern Wadden Sea was monitored for sediment parameters and macrobenthic fauna using stratified random sampling of a grid of 50 sampling positions. Samples were collected with a Reineck-type box-corer of 0.02 m² surface area, macrobenthos (sieved through 1 mm square meshes and fixed in buffered formalin solution) was counted, identified to species level, and the size of hard-shelled individuals measured. This dataset contains the size measurements of 134 individuals from the 2019 sampling.
DOI: 10.1594/pangaea.947213
title: Zoobenthos and sediments time series at List Reede, Sylt, Germany, in 2007

description: A shallow subtidal area in the northern Wadden Sea was monitored for sediment parameters and macrobenthic fauna using stratified random sampling of a grid of 50 sampling positions. Samples were collected with a Reineck-type box-corer of 0.02 m² surface area. Granulometric sediment composition was analysed from a sub-sample of each box-core using a diffraction laser particle-size analyser. Macrobenthos (sieved through 1 mm square meshes and fixed in buffered formalin solution) was counted, identified to species level, and the size of hard-shelled individuals measured. The amount of shell detritus was quantified as wet-weight in the benthos samples. This dataset contains the results of the ten sampling dates in 2007.
DOI: 10.25442/hku.26889058
title: Supporting data for "Identification of Antiviral Drug Combinations Using Machine Learning Approaches"

description: In this study, we acquire approximately 14,000 variables per compound. The individual drug compound features and corresponding average cell survival rates are randomly split into a training set and a test set, making up 70% and 30%, respectively. We employ algorithms such as RF, Enet, GBM to train the ML models. Additionally, we use the Pearson correlation coefficient to filter variables for training the machine learning models and conduct area under the AUC assessments to evaluate model performance. This enables us to select the top five models with the highest R values to establish predictive machine learning models against H1N1. This is a crucial first step in building our single drug machine learning models.To progress towards dual drug predictive machine learning models, we use eight anti-H1N1 drugs as inputs. These drugs are clinically used to treat influenza viruses. Subsequently, we consolidate the final valuable data from the features of these eight anti-H1N1 drugs and 1,612 compounds and their related cell survival rates to feed into the top five models. This allows us to derive the predictive values of each drug combination and ultimately find 148 combinations among the top 200 ranked by efficacy across all models.To validate the synergistic anti-H1N1 effects of these predictive drug combinations, we first conduct wet experiments of IC50 detection for the eight anti-H1N1 drugs and procure the cell survival rates of 1,184 drug combinations (148 x 8 drugs) via the CellTiter-Glo® luminescent assay. Based on the results of the wet experiments, we use the experimental average values as the true values for evaluating the efficacy of the drug combinations against H1N1. Then, we assess the AUC between the true values and the predictive values of the top five models. The Enet models demonstrated the best performance.To examine drug synergism, we use the Bliss and HSA methods to calculate the CI values.<br>
DOI: 10.25442/hku.26889058.v1
title: Supporting data for "Identification of Antiviral Drug Combinations Using Machine Learning Approaches"

description: In this study, we acquire approximately 14,000 variables per compound. The individual drug compound features and corresponding average cell survival rates are randomly split into a training set and a test set, making up 70% and 30%, respectively. We employ algorithms such as RF, Enet, GBM to train the ML models. Additionally, we use the Pearson correlation coefficient to filter variables for training the machine learning models and conduct area under the AUC assessments to evaluate model performance. This enables us to select the top five models with the highest R values to establish predictive machine learning models against H1N1. This is a crucial first step in building our single drug machine learning models.To progress towards dual drug predictive machine learning models, we use eight anti-H1N1 drugs as inputs. These drugs are clinically used to treat influenza viruses. Subsequently, we consolidate the final valuable data from the features of these eight anti-H1N1 drugs and 1,612 compounds and their related cell survival rates to feed into the top five models. This allows us to derive the predictive values of each drug combination and ultimately find 148 combinations among the top 200 ranked by efficacy across all models.To validate the synergistic anti-H1N1 effects of these predictive drug combinations, we first conduct wet experiments of IC50 detection for the eight anti-H1N1 drugs and procure the cell survival rates of 1,184 drug combinations (148 x 8 drugs) via the CellTiter-Glo® luminescent assay. Based on the results of the wet experiments, we use the experimental average values as the true values for evaluating the efficacy of the drug combinations against H1N1. Then, we assess the AUC between the true values and the predictive values of the top five models. The Enet models demonstrated the best performance.To examine drug synergism, we use the Bliss and HSA methods to calculate the CI values.<br>
DOI: 10.1594/pangaea.947227
title: Zoobenthos and sediments time series at List Reede, Sylt, Germany, in 2008

description: A shallow subtidal area in the northern Wadden Sea was monitored for sediment parameters and macrobenthic fauna using stratified random sampling of a grid of 50 sampling positions. Samples were collected with a Reineck-type box-corer of 0.02 m² surface area. Granulometric sediment composition was analysed from a sub-sample of each box-core using a diffraction laser particle-size analyser. Macrobenthos (sieved through 1 mm square meshes and fixed in buffered formalin solution) was counted, identified to species level, and the size of hard-shelled individuals measured. The amount of shell detritus was quantified as wet-weight in the benthos samples. This dataset contains the results of the five sampling dates in 2008.
DOI: 10.1594/pangaea.911332
title: Myoxocephalus scorpius in the Sylt Rømø bight in 2019

description: Due to changing temperature regimes in the North- and the Wadden Sea, a fish survey in the Sylt Rømø bight (SRB) was established in 2007 for at least ten years. The aim is to investigate the Wadden Sea fish fauna with special interest in changes of migration behavior, species composition and feeding habits. Seven stations are sampled monthly inside the SRB. Two additional stations, one outside the bight, one close to the Danish border are sampled as references four times a year. For sampling a mini bottom trawl, total length 17 m, trawl opening 7 m, height 3 m with a mesh size of 36 mm in the wings, 16 mm in the mid part and 6 mm in the cod end is used. At every station one haul in the water column and another at the bottom are sampled, for 15 minutes at a speed of approximately 2 knots. The data will help to give a more detailed picture of food chains and energy flows inside the Wadden Sea.
DOI: 10.1594/pangaea.911340
title: Pleuronectes platessa in the Sylt Rømø bight in 2019

description: Due to changing temperature regimes in the North- and the Wadden Sea, a fish survey in the Sylt Rømø bight (SRB) was established in 2007 for at least ten years. The aim is to investigate the Wadden Sea fish fauna with special interest in changes of migration behavior, species composition and feeding habits. Seven stations are sampled monthly inside the SRB. Two additional stations, one outside the bight, one close to the Danish border are sampled as references four times a year. For sampling a mini bottom trawl, total length 17 m, trawl opening 7 m, height 3 m with a mesh size of 36 mm in the wings, 16 mm in the mid part and 6 mm in the cod end is used. At every station one haul in the water column and another at the bottom are sampled, for 15 minutes at a speed of approximately 2 knots. The data will help to give a more detailed picture of food chains and energy flows inside the Wadden Sea.
DOI: 10.1594/pangaea.937838
title: Gasterosteus aculeatus in the Sylt Rømø bight in 2020

description: Due to changing temperature regimes in the North- and the Wadden Sea, a fish survey in the Sylt Rømø bight (SRB) was established in 2007 for at least ten years. The aim is to investigate the Wadden Sea fish fauna with special interest in changes of migration behavior, species composition and feeding habits. Seven stations are sampled monthly inside the SRB. Two additional stations, one outside the bight, one close to the Danish border are sampled as references four times a year. For sampling a mini bottom trawl, total length 17 m, trawl opening 7 m, height 3 m with a mesh size of 36 mm in the wings, 16 mm in the mid part and 6 mm in the cod end is used. At every station one haul in the water column and another at the bottom are sampled, for 15 minutes at a speed of approximately 2 knots. The data will help to give a more detailed picture of food chains and energy flows inside the Wadden Sea.
DOI: 10.1594/pangaea.937840
title: Jellyfish in the Sylt Rømø bight in 2020

description: Due to changing temperature regimes in the North- and the Wadden Sea, a fish survey in the Sylt Rømø bight (SRB) was established in 2007 for at least ten years. The aim is to investigate the Wadden Sea fish fauna with special interest in changes of migration behavior, species composition and feeding habits. Seven stations are sampled monthly inside the SRB. Two additional stations, one outside the bight, one close to the Danish border are sampled as references four times a year. For sampling a mini bottom trawl, total length 17 m, trawl opening 7 m, height 3 m with a mesh size of 36 mm in the wings, 16 mm in the mid part and 6 mm in the cod end is used. At every station one haul in the water column and another at the bottom are sampled, for 15 minutes at a speed of approximately 2 knots. The data will help to give a more detailed picture of food chains and energy flows inside the Wadden Sea.
DOI: 10.1594/pangaea.937842
title: Loligo vulgaris in the Sylt Rømø bight in 2020

description: Due to changing temperature regimes in the North- and the Wadden Sea, a fish survey in the Sylt Rømø bight (SRB) was established in 2007 for at least ten years. The aim is to investigate the Wadden Sea fish fauna with special interest in changes of migration behavior, species composition and feeding habits. Seven stations are sampled monthly inside the SRB. Two additional stations, one outside the bight, one close to the Danish border are sampled as references four times a year. For sampling a mini bottom trawl, total length 17 m, trawl opening 7 m, height 3 m with a mesh size of 36 mm in the wings, 16 mm in the mid part and 6 mm in the cod end is used. At every station one haul in the water column and another at the bottom are sampled, for 15 minutes at a speed of approximately 2 knots. The data will help to give a more detailed picture of food chains and energy flows inside the Wadden Sea.
DOI: 10.1594/pangaea.755072
title: Biomass of Green algae in the northern Wadden Sea at station Sylt_Tonnenleger-Bucht in 2000

description: At each site species community and algal percent coverage of an area of 50x50 m is determined. To determine biomass, ten replicates samples per site (10x10 cm) are taken by removing the algae from the sediment surface. In the laboratory, biomass (ash free dry weight) of each species within the samples is determined by drying the algae at 75°C for three days followed by ashing at 500°C for six hours.
DOI: 10.1594/pangaea.948882
title: Asterias rubens in the Sylt Rømø bight in 2021

description: Due to changing temperature regimes in the North- and the Wadden Sea, a fish survey in the Sylt Rømø bight (SRB) was established in 2007 for at least ten years. The aim is to investigate the Wadden Sea fish fauna with special interest in changes of migration behavior, species composition and feeding habits. Since 2021 an assessment of the epibenthic species in the net hauls was included. Seven stations are sampled monthly inside the SRB. Two additional stations, one outside the bight, one close to the Danish border are sampled as references four times a year. For sampling a mini bottom trawl, total length 17 m, trawl opening 7 m, height 3 m with a mesh size of 36 mm in the wings, 16 mm in the mid part and 6 mm in the cod end is used. At every station one haul in the water column and another at the bottom are sampled, for 15 minutes at a speed of approximately 2 knots. The data will help to give a more detailed picture of food chains and energy flows inside the Wadden Sea.
DOI: 10.1594/pangaea.948884
title: Carcinus maenas in the Sylt Rømø bight in 2021

description: Due to changing temperature regimes in the North- and the Wadden Sea, a fish survey in the Sylt Rømø bight (SRB) was established in 2007 for at least ten years. The aim is to investigate the Wadden Sea fish fauna with special interest in changes of migration behavior, species composition and feeding habits. Since 2021 an assessment of the epibenthic species in the net hauls was included. Seven stations are sampled monthly inside the SRB. Two additional stations, one outside the bight, one close to the Danish border are sampled as references four times a year. For sampling a mini bottom trawl, total length 17 m, trawl opening 7 m, height 3 m with a mesh size of 36 mm in the wings, 16 mm in the mid part and 6 mm in the cod end is used. At every station one haul in the water column and another at the bottom are sampled, for 15 minutes at a speed of approximately 2 knots. The data will help to give a more detailed picture of food chains and energy flows inside the Wadden Sea.
DOI: 10.1594/pangaea.948892
title: Clupeidae larvae in the Sylt Rømø bight in 2021

description: Due to changing temperature regimes in the North- and the Wadden Sea, a fish survey in the Sylt Rømø bight (SRB) was established in 2007 for at least ten years. The aim is to investigate the Wadden Sea fish fauna with special interest in changes of migration behavior, species composition and feeding habits. Since 2021 an assessment of the epibenthic species in the net hauls was included. Seven stations are sampled monthly inside the SRB. Two additional stations, one outside the bight, one close to the Danish border are sampled as references four times a year. For sampling a mini bottom trawl, total length 17 m, trawl opening 7 m, height 3 m with a mesh size of 36 mm in the wings, 16 mm in the mid part and 6 mm in the cod end is used. At every station one haul in the water column and another at the bottom are sampled, for 15 minutes at a speed of approximately 2 knots. The data will help to give a more detailed picture of food chains and energy flows inside the Wadden Sea.
DOI: 10.1594/pangaea.948935
title: Sprattus sprattus in the Sylt Rømø bight in 2021

description: Due to changing temperature regimes in the North- and the Wadden Sea, a fish survey in the Sylt Rømø bight (SRB) was established in 2007 for at least ten years. The aim is to investigate the Wadden Sea fish fauna with special interest in changes of migration behavior, species composition and feeding habits. Since 2021 an assessment of the epibenthic species in the net hauls was included. Seven stations are sampled monthly inside the SRB. Two additional stations, one outside the bight, one close to the Danish border are sampled as references four times a year. For sampling a mini bottom trawl, total length 17 m, trawl opening 7 m, height 3 m with a mesh size of 36 mm in the wings, 16 mm in the mid part and 6 mm in the cod end is used. At every station one haul in the water column and another at the bottom are sampled, for 15 minutes at a speed of approximately 2 knots. The data will help to give a more detailed picture of food chains and energy flows inside the Wadden Sea.