cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17617/3.f4ik6w
title: Rainbows in a bottle: Realizing microoptic effects by polymerizable multiple emulsion particle design

description: In nature, structural colour generation is based on discriminative light propagation associated with physical structures in the range of the wavelengths of light1. These iridescent structural colours are of immense significance2 but not easy to control experimentally and therefore difficult to exploit for applications. In this work, we employ microfluidics to produce polymerizable double emulsions that can not only induce the already known lensing effect3 but also result in the spectral separation of white light. Here, liquids of varying refractive in-dex that constitute the emulsions resulted in patterns of iridescent colours. After polymerization, the inner emulsion cores collapse and this results in curved concave surfaces on these polymeric microspheres. Interestingly, the light propagation along the curved surfaces undergo total internal reflection, followed by near-field interference along exit structures on the polymerized microspheres4. These structured polymeric particles that are able to generate colour dispersions can be exploited for optical devices, displays and even sensing technologies.
DOI: 10.17617/3.vygwhy
title: Supplementary data for Corr2Cause: "Can Large Language Models Infer Causation from Correlation?"

description: Paper: "Can Large Language Models Infer Causation from Correlation?" (2023) by Zhijing Jin, Jiarui Liu, Zhiheng Lyu, Spencer Poff, Mrinmaya Sachan, Rada Mihalcea, Mona Diab*, Bernhard Schölkopf*. (http://arxiv.org/abs/2306.05836)
&lt;br&gt;
&lt;br&gt;
Abstract: Causal inference is one of the hallmarks of human intelligence. While the field of CausalNLP has attracted much interest in the recent years, existing causal inference datasets in NLP primarily rely on discovering causality from empirical knowledge (e.g., commonsense knowledge). In this work, we propose the first benchmark dataset to test the pure causal inference skills of large language models (LLMs). Specifically, we formulate a novel task Corr2Cause, which takes a set of correlational statements and determines the causal relationship between the variables. We curate a large-scale dataset of more than 200K samples, on which we evaluate seventeen existing LLMs. Through our experiments, we identify a key shortcoming of LLMs in terms of their causal inference skills, and show that these models achieve almost close to random performance on the task. This shortcoming is somewhat mitigated when we try to re-purpose LLMs for this skill via finetuning, but we find that these models still fail to generalize -- they can only perform causal inference in in-distribution settings when variable names and textual expressions used in the queries are similar to those in the training set, but fail in out-of-distribution settings generated by perturbing these queries. Corr2Cause is a challenging task for LLMs, and would be helpful in guiding future research on improving LLMs' pure reasoning skills and generalizability. Our data is at https://huggingface.co/datasets/causalnlp/corr2cause. Our code is at https://github.com/causalNLP/corr2cause
DOI: 10.17617/3.1yiesh
title: Data for: An automated approach for counting groups of flying animals applied to one of the world’s largest bat colonies

description: Data that goes with paper entitled "An automated approach for counting groups of flying animals applied to one of the world’s largest bat colonies" published by the same authors as this dataset. Data is stored as .npy files containing the crossing information for each detected bat during the study.
DOI: 10.17617/3.1stijv
title: Atmospheric mixing ratios of CO2 and CH4 at Ambarchik, NE Siberia, 2014-2017

description: Ambarchik is located at the mouth of the Kolyma River, which opens to the East Siberian Sea (69.62N, 162.30E). The majority of the landscape in the immediate vicinity of the locality is wet tussock tundra. At the ecoregion scale, Ambarchik is bordered by Northeast Siberian Coastal Tundra ecoregion in the west, the Chukchi Peninsula Tundra ecoregion in the east, and the Northeast Siberian Taiga ecoregion in the south. Major components contributing to the net carbon exchange processes in the area are tundra landscapes including wetlands and lakes, as well as the Kolyma River and the East Siberian Arctic Shelf.

Ambarchik hosts a weather station operated by the Russian meteorological service, whose staff is the entire permanent population of the locality. The closest town is Chersky (∼ 100 km to the south, with a population of 2857 as of 2010), with no other larger permanent settlement closer than 240 km. Thus, the site does not have any major sources of anthropogenic greenhouse gas emissions in the nearby. The only regular anthropogenic CO2 and potential CH4 sources that may influence the measurements are from the facility itseöf, including the building that hosts the power generator and the inhabited building.

The atmospheric carbon observation station Ambarchik began operation in August 2014. It consists of a 27 m tall tower with two air inlets and meteorological measurements, while the majority of the instrumentation is hosted in a rack inside a building. Atmospheric mole fractions of CH4 , CO2 , and H2O are measured by an analyzer based on the cavity ring-down spectroscopy (CRDS) technique (G2301, Picarro Inc.), which is calibrated against WMO-traceable reference gases at regular intervals. The tower is located 260m from the shoreline, with a base elevation of 20 m a.s.l. 

For more detailed information on instrument setup and station characteristics, please refer to :
Reum, F., Göckede, M., Lavric, J. V., Kolle, O., Zimov, S., Zimov, N., Pallandt, M., and Heimann, M.: Accurate measurements of atmospheric carbon dioxide and methane mole fractions at the Siberian coastal site Ambarchik, Atmos. Meas. Tech., 12, 5717-5740, 2019.
DOI: 10.17617/3.rnichv
title: An unsupervised deep learning algorithm for single-site reconstruction in quantum gas microscopes

description: Data presented in the publication.
DOI: 10.17617/3.sqgwhl
title: Toxicity of Asclepias curassavica seeds
DOI: 10.17617/3.ejqgak
title: The Pile Roberta Large Index

description: The repository contains files for a nearest neighbor index of text embeddings for the entire Pile dataset.

For more information see:

https://github.com/socialfoundations/tttlm
DOI: 10.21233/q1rm-b128
title: Dixie Lime Cave #1 vertebrate fauna dataset

description: Raw data for the Dixie Lime Cave #1 vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.tynbeq
title: covid_twitter_data
DOI: 10.17617/3.njo672
title: Dataset underlying Doctoral Thesis by Pauline Buffard

description: This dataset contains all data underlying the studies contained in Pauline Buffard's doctoral thesis "A simple path to complexity: horizontal gene transfer in microbial communities" submitted on 08.06.2023 to the Faculty of Mathematics and Natural Sciences at Christian Albrechts University, Kiel in partial fulfillment of the requirements for earning the degree Dr. rer. nat..
DOI: 10.17617/3.plcjqe
title: Radiation as the Dominant Cause of High-temperature Extremes on the Eastern Tibetan Plateau. Datasets and figures

description: This depository contains PDF versions of the figures of the paper as well as the scripts and data used to create the plots and maps. Check the README file for description of individual files.
description: Python, 3.6
description: DataGraph
DOI: 10.17617/3.0y9q8n
title: Datasets for PICNIC
DOI: 10.17617/3.7kf4jr
title: Data for RSPB-2023-0496
DOI: 10.17617/3.ssryim
title: The Sun's differential rotation is controlled by high-latitude baroclinically unstable inertial modes

description: The simulation output data for reproducing the results reported in the publication "The Sun's differential rotation is controlled by high-latitude baroclinically unstable inertial modes" by Bekki, Cameron, and Gizon.
DOI: 10.15468/dl.6svxxa
title: Occurrence Download

description: A dataset containing 9825 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Morchella esculenta (L.) Pers.)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Geometry POLYGON ((-20 20, -20 75, 45 75, 45 20, -20 20))"
 ]
}

 The dataset includes 9825 records from 200 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021479-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17617/3.eprbfa
title: Supplementary material for "Efficient global sensitivity analysis of kinetic Monte Carlo simulations using Cramérs von Mises distance"

description: A complementary simple toy problem and sample code and datasets of 1p-kMC simulation results used for the manuscript. For details see the README.me file
DOI: 10.17617/3.diavnc
title: SHARK-dive supporting datasets

description: Supplementary datasets for SHARK-dive
DOI: 10.17617/3.bpngxa
title: Data, Materials: Rubber-like elasticity in laser-driven free surface flow of a Newtonian fluid

description: Data and Materials repository
DOI: 10.17617/3.czodiw
title: Drosophila Brain Model

description: A computational model of the Drosophila brain (&lt;a href="https://doi.org/10.1101/2023.05.02.539144l"&gt;bioRxiv&lt;/a&gt;, &lt;a href="https://github.com/philshiu/Drosophila_brain_model"&gt;Github&lt;/a&gt;)
description: Brian 2 Simulator, 2.5.1
DOI: 10.17617/3.p6sevc
title: Structural Insights into the Iron Nitrogenase Complex

description: Experimental data of the manuscript "Structural insights into the Iron Nitrogenase Complex" including SDS-PAGEs, activity assay raw data, mass photometry data, size exclusion chromatography data, ICP-OES data
DOI: 10.17617/3.6x6jxr
title: Methane formation driven by light and heat prior to the origin of life and beyond

description: Methane is a potent greenhouse gas, which likely enabled the evolution of life by keeping the early Earth warm. Here, we demonstrate new routes towards abiotic methane and ethane formation under early-earth conditions from methylated sulfur and nitrogen compounds with prebiotic origin. These compounds are demethylated in Fenton reactions governed by ferrous iron and reactive oxygen species (ROS) produced by light and heat in aqueous environments. After the emergence of life, this phenomenon would have greatly intensified in the anoxic Archean by providing methylated sulfur and nitrogen substrates. This ROS-driven Fenton chemistry can occur delocalized from serpentinization across Earth’s humid realm and thereby substantially differs from previously suggested methane formation routes that are spatially restricted. Here, we report that Fenton reactions driven by light and heat release hydrocarbons and might have shaped the chemical evolution of the atmosphere prior to the origin of life and beyond.
DOI: 10.17617/3.9s0o4q
title: Data set: A multifunctional soft robotic shape display with high-speed actuation, sensing, and control

description: Dataset used to generate plots and additional data for the manuscript "A multifunctional soft robotic shape display with high-speed actuation, sensing, and control." The dataset contains several subdirectories with readme files describing the format and structure of the data for each experiment.
DOI: 10.17617/3.ogrunx
title: Characterization of innexins (gap junctions) in D. melanogaster antennae
DOI: 10.17617/3.vpuios
title: Data underlying the doctoral Thesis of Lavisha Parab

description: Studying phage resistance evolution through surface modifications
Chapters on antibiotic susceptibility changes, and effect of adaptation and community presence on phage resistance evolution
DOI: 10.17617/3.3zloat
title: Microscope raw images for "Globally occurring pelagiphage infections create ribosome-deprived zombie cells"

description: This repository contains raw data (images) from an automatic microscope that were used to quantify the amount of phage-infected cells in environmental samples.
DOI: 10.17617/3.pidvut
title: Chloramphenicol and gentamicin reduce the evolution of resistance to phage ΦX174 by suppressing a subset of E. coli LPS mutants

description: This dataset contains antibiotic plate images and fastq sequencing data of the fluctuation experiment. 
Please refer to README file for details on the filenames
DOI: 10.21233/6ghx-sg20
title: Sidney Bog testate amoebae surface sample dataset

description: Raw data for the Sidney Bog testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.hndich
title: Codes and Data for "Radiative controls by clouds and thermodynamics shape surface temperatures and turbulent fluxes over land"

description: This file contains the netcdf file derived from NASA-CERES and the codes illustrating data processing and development of maximum power model.
DOI: 10.17617/3.vwauye
title: Immunofluorescence of Loxodes ciliate nuclei for histones, histone marks and 6mA

description: Localization of histones, histone modifications, and 6mA base modification to specific nuclei types in Loxodes ciliates by immunofluorescence and imaging of whole cells. This serves to verify results from Western blotting of isolated nuclei populations sorted by FACS. 

See README.md for more details
DOI: 10.17617/3.0dvgmu
title: Western blots of Loxodes ciliate nuclei for histones and histone modifications

description: See README.md for more information
DOI: 10.17617/3.bofmws
title: Shortlists of conserved domains for searches of key genes in Loxodes

description: Shortlists of conserved protein domains for different groups of genes of
interest in the ciliate Loxodes magnus. Lists use InterPro domain identifiers,
and were searched against InterProScan annotations.

See README.md for details
DOI: 10.17617/3.uovu6o
title: Giant lattice softening at a Lifshitz transition in Sr2RuO4 (dataset & code)

description: Figure data and code supporting the publication "Giant lattice softening at a Lifshitz transition in Sr2RuO4."
DOI: 10.17617/3.zcmekj
title: Data and codes from "Delineating the seasonality of varicella and its association with climate in the tropical country of Colombia"

description: Data and R codes associated with the manuscript "Delineating the seasonality of varicella and its association with climate in the tropical country of Colombia"
description: R, Software, Version: 4.1.2
DOI: 10.17617/3.4nhkph
title: Earth system modeling on Modular Supercomputing Architectures: coupled atmosphere-ocean simulations with ICON 2.6.6-rc

description: This dataset provides the model source code for the simulations described in the publication "Earth system modeling on Modular Supercomputing Architectures:
coupled atmosphere-ocean simulations with ICON 2.6.6-rc" to be submitted.
description: ICON, 2.6.6
DOI: 10.17617/3.cshrsx
title: Collective chess dataset

description: This dataset contains all the experimental data collected during our collective chess experiments. It contains demographic information about the 8954 participants, and all the moves that were played during the 500 games of the experiment (including individual votes). The dataset is formatted as a Matlab data file.
description: Matlab, R2018a
DOI: 10.48804/20hb9v
title: Time Sharing - A Novel Approach to Low-Latency Masking

description: This repository contains the supplementary materials corresponding to the paper "Time Sharing - A Novel Approach to Low-Latency Masking" accepted for publication in CHES 2024. 
We include the HDL source code(Verilog), corresponding netlists and formal verification results for the S-Boxes of PRINCE and AES.
The source code can be used as a reference for the the novel masking technique to construct implementations of other ciphers.
DOI: 10.15468/dl.jxyeh2
title: Occurrence Download

description: A dataset containing 671 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Athyrium crenulatoserrulatum Makino",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 671 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021480-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17617/3.pilcpq
title: Controllable orbital angular momentum monopoles in chiral topological semimetals

description: Accompanying dataset for the paper 'Controllable orbital angular momentum monopoles in chiral topological semimetals'. https://arxiv.org/abs/2311.13217
DOI: 10.17617/3.z10mpa
title: Code for "Effects of vertical grid spacing on the climate simulated in the ICON-Sapphire global storm-resolving model"

description: This dataset provides the model source code for the simulations described in the publication "Effects of vertical grid spacing on the climate simulated in the ICON-Sapphire global storm-resolving model" submitted to Geoscientific Model Development (GMD)
DOI: 10.17617/3.upwt1q
title: Data for “Closing the Loop in Minimally Supervised Human-Robot Interaction: Formative and Summative Feedback"

description: This Excel file provides the data required to perform the statistical analyses presented in the manuscript: "Closing the Loop in Minimally Supervised Human-Robot Interaction: Formative and Summative Feedback". Each of the nine included sheets contains a different subset of the collected data.
DOI: 10.17617/3.fm4ejc
title: Energy landscape Ontogeny
DOI: 10.17617/3.ja8zw4
title: Training checkpoints for the TriFinger Cube Push and Lift tasks

description: Training checkpoints for policies trained in Isaac Gym simulation of the TriFinger robotics platform. Checkpoints are available for two tasks: (i) Push a cube to a goal position on the ground, (ii) Lift a cube to goal position and orientation in the air. The checkpoints can be used with the following repository: https://github.com/rr-learning/trifinger-rl-example
description: Isaac Gym, Preview 3
DOI: 10.17617/3.rrvhkq
title: Source data for "Controlling the assembly of cellulose-based oligosaccharides through sequence modifications"

description: Source data for "Controlling the assembly of cellulose-based oligosaccharides through sequence modifications"
DOI: 10.17617/3.2cpisw
title: Menstrual cycle brain plasticity: Ultra-high field 7T MRI reveals changes in human medical temporal lobe volume in female adults
DOI: 10.17617/3.p9gm9z
title: Data for Upside down: an open-source motion platform for highly dynamic movement

description: Dataset contains simulation model, control program, and CAD model of the motion platform. Publication link: https://doi.org/10.48550/arXiv.2303.17974
DOI: 10.17617/3.lcuaor
title: Data S1-3 from the manuscript Optimal control pulses for the 1.2 GHz (28.2 T) NMR spectrometers
DOI: 10.17617/3.zbolu8
title: ISWI1 complex proteins facilitate developmental genome editing in Paramecium
DOI: 10.17617/3.nev8c1
title: Loxodes magnus indel polymorphisms and variant calling

description: Indel and variant calling in Loxodes magnus nuclear genomes for detection of putative IESs.

Please see Readme for more information.
description: bleties, 0.1.11
DOI: 10.17617/3.3y67p3
title: Dataset for the manuscript entitled "Babbling opens the sensory phase for imitative vocal learning".

description: This dataset comprises experimental data, sound files used for the analyses and spreadsheets corresponding to each figure presented in this study
DOI: 10.17617/3.3f5jpu
title: STM images and DFT structures of glycoconjugates

description: Raw STM images of glycans and glycoconjugates were given in the SXM format outputted directly from the Nanonis control software, which can be opened using WSXM or Gwyddion. Computed structures were given in XYZ format, which can be opened by common molecular modeling software such as VMD, VESTA, Avogadro, ChimeraX, etc.
DOI: 10.17617/3.hmabq2
title: Supplementary videos for "Cytosolic sorting platform complexes serve as a shuttle for effectors of the type III secretion system"

description: Examplary raw microscopy data of single particle tracking photoactivated localization microscopy for PAmCherry-SctQ:
(i) strain delta-effectors, non-secreting conditions (d_eff_nscr.tif)
(ii) wild-type strain, non-secreting conditions (WT_nscr.tif)
(iii) wild-type strain, secreting conditions (WT_scr.tif)
DOI: 10.17617/3.axlvk0
title: Atmospheric flask sampling program of MPI-BGC, version 2023.4

description: This dataset contains the quality controlled, calibrated measurements of atmospheric greenhouse gas concentration and isotopic composition from air flask samples collected at a global network of stations. Version 2023.4 contains the observations from 2004 until early 2023. Sampling and measurement procedures, quality control, data screening and data format are described in the included report "The atmospheric flask sampling program of MPI-BGC, version 13".
DOI: 10.17617/3.3ceybm
title: Nutrient supplementation by genome-eroded Burkholderia symbionts of scale insects

description: Phylogenomic analysis, genome assemblies and annotations for the intracellular symbionts (Burkholderia endosymbiotica) of the sap-feeding insects Acanthococcus aceris and Gossyparia spuria (Hemiptera, Eriococcidae).
DOI: 10.17617/3.5s5xuv
title: Dataset: "Decoding the Relationship Between Cloud Electrification, Downdrafts, and Surface Ozone in the Amazon Basin"

description: The dataset used to generate plots for the manuscript "Decoding the Relationship Between Cloud Electrification, Downdrafts, and Surface Ozone in the Amazon Basin." It contains data of the electric field, downdrafts, ozone, GLM events, and cloud top height. All files are in CSV format.
DOI: 10.17617/3.d5pcqk
title: Code and data for the manuscript 'A numerical compass for experiment design in chemical kinetics and molecular property estimation'

description: The numerical compass (NC) method integrates kinetic models, global optimization, ensemble methods, and machine learning to identify experimental conditions with the greatest potential to constrain kinetic parameters. The approach is based on the quantification of model output variance in an ensemble of solutions that agree with experimental data. The utility of the NC method is demonstrated for the kinetic parameters in a multi-layer model describing the heterogeneous ozonolysis of oleic acid aerosols.
description: Python, 3.10
DOI: 10.17617/3.6jlofx
title: Genome differences between SIJ488 and MG1655

description: The comparison between SIJ488 (CP132594) and MG1655 (U00096) genomes.
DOI: 10.21233/ea6b-4682
title: Ray Ranch Pond pollen surface sample dataset

description: Raw data for the Ray Ranch Pond pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.cwozqo
title: Photomanipulation of minimal synthetic cells: area increase, softening and interleaflet coupling of membrane models doped with azobenzene-lipid photoswitches

description: Supporting data (simulation files, movies) for Aleksanyan et al. (2023) Advanced Science
description: GROMACS, 5.1.2
DOI: 10.17617/3.veiri1
title: Thermodynamics and fractal dynamics of nematic spin ice