cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13324219
title: Implementation and Results of a "Randomized Local Search for Two-Dimensional Bin Packing and a Negative Result for Frequency Fitness Assignment"

description: 1. Introduction

In this archive, we provide the implementation and experimental results of a Randomized Local Search (RLS) applied to the two-dimensional bin packing problem with and without orientation. As benchmark dataset, we use the beng, A, and class instances from 2DPackLib as well as the four non-trivial Almost Squares in Almost Squares (Asqas) instances

These are the data used in the paper below, which contains the exact specification of all algorithms, objective functions, and the encoding we applied.

Rui Zhao, Zhize Wu, Daan van den Berg, Matthias Thürer, Tianyu Liang, Ming Tan, and Thomas Weise. Randomized Local Search for Two-Dimensional Bin Packing and a Negative Result for Frequency Fitness Assignment. In 16th International Conference on Evolutionary Computation Theory and Applications (ECTA'24), part of the 16th International Joint Conference on Computational Intelligence (IJCCI'24). November 20-24, 2024. Porto, Portugal. Setúbal, Portugal: SciTePress.

To run the experiments, you need moptipyapps and moptipy, which contain the actual algorithm implementations. Both packages are available on GitHub and on PyPI. However, we include several versions of them in the folder source/packages, just in case.

2. Directory Structure

This archive contains the following directories:



source contains the Python source codes needed to run the experiment.

source/packages contains the source codes of the Python packages with the actual algorithm implementations.

source/experiment_execution_scripts contains the scripts to run the experiments.

results is the directory with the results, i.e., with the log files generated by the experiment.

evaluator is the folder containing Python scripts that were used to evaluate these results.

evaluation was generated using the evaluation scripts and contains tables and figures and a result summary in CSV format.


3. License

The files in this repository are under the Creative Commons Attribution 4.0 International, with the exception of the files of 2DPackLib and other benchmark datasets included, which are under copyright of their respective owner (we believe that they are in the public domain, as they are provided by many sources, included in many software packages under various open source licenses, and on many websites). The license is contained as file LICENSE.txt in this archive.

4. Contact

If you have any questions or suggestions, please contact

Mr. Rui ZHAO (赵睿) of the Institute of Applied Optimization (应用优化研究所, IAO) of the School of Artificial Intelligence and Big Data (人工智能与大数据学院) at Hefei University (合肥大学) in Hefei, Anhui, China (中国安徽省合肥市) via email to zr1329142665@163.com.
DOI: 10.15468/dl.tkrk8r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.966884 -32.899241, 148.966884 -32.903733, 148.971376 -32.903733, 148.971376 -32.899241, 148.966884 -32.899241)), ((148.966884 -32.899241, 148.966884 -32.896996, 148.964639 -32.896996, 148.964639 -32.899241, 148.966884 -32.899241)), ((148.971376 -32.899241, 148.973622 -32.899241, 148.973622 -32.896996, 148.971376 -32.896996, 148.971376 -32.899241)), ((148.973622 -32.896996, 148.980359 -32.896996, 148.980359 -32.903733, 148.989342 -32.903733, 148.989342 -32.908225, 148.993834 -32.908225, 148.993834 -32.905979, 148.99608 -32.905979, 148.99608 -32.903733, 148.993834 -32.903733, 148.993834 -32.899241, 148.982605 -32.899241, 148.982605 -32.89475, 148.99608 -32.89475, 148.99608 -32.888012, 148.987097 -32.888012, 148.987097 -32.883521, 148.982605 -32.883521, 148.982605 -32.881275, 148.980359 -32.881275, 148.980359 -32.89475, 148.975868 -32.89475, 148.975868 -32.883521, 148.973622 -32.883521, 148.973622 -32.890258, 148.971376 -32.890258, 148.971376 -32.89475, 148.973622 -32.89475, 148.973622 -32.896996)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067876-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26575544.v1
title: Additional file 5 of Unravelling the limb regeneration mechanisms of Polypedates maculatus, a sub-tropical frog, by transcriptomics

description: Additional file 5.
DOI: 10.6084/m9.figshare.26704785
title: Additional file 1 of Increased risk of psychiatric disorder in patients with hearing loss: a nationwide population-based cohort study

description: Additional file 1: Table S1. Abbreviations, ICD-9-CM codes, and definitions.
DOI: 10.6084/m9.figshare.26704785.v1
title: Additional file 1 of Increased risk of psychiatric disorder in patients with hearing loss: a nationwide population-based cohort study

description: Additional file 1: Table S1. Abbreviations, ICD-9-CM codes, and definitions.
DOI: 10.6084/m9.figshare.26704788
title: Additional file 2 of Increased risk of psychiatric disorder in patients with hearing loss: a nationwide population-based cohort study

description: Additional file 2: Table S3. Factors of poor prognosis among different diagnosed department of hearing loss by using Cox regression and Bonferroni correction for multiple comparisons.
DOI: 10.6084/m9.figshare.26704788.v1
title: Additional file 2 of Increased risk of psychiatric disorder in patients with hearing loss: a nationwide population-based cohort study

description: Additional file 2: Table S3. Factors of poor prognosis among different diagnosed department of hearing loss by using Cox regression and Bonferroni correction for multiple comparisons.
DOI: 10.6084/m9.figshare.26704791
title: Additional file 3 of Increased risk of psychiatric disorder in patients with hearing loss: a nationwide population-based cohort study

description: Additional file 3: Table S4. Analysis of whether events had a short-, medium-, or long-term impact.
DOI: 10.6084/m9.figshare.26704791.v1
title: Additional file 3 of Increased risk of psychiatric disorder in patients with hearing loss: a nationwide population-based cohort study

description: Additional file 3: Table S4. Analysis of whether events had a short-, medium-, or long-term impact.
DOI: 10.6084/m9.figshare.26704794
title: Additional file 1 of Recombination analysis on the receptor switching event of MERS-CoV and its close relatives: implications for the emergence of MERS-CoV

description: Additional file 1: Table S1. Representative of merbecoviruses classified according to their strain name, GenBank accession number, host, country, group, and the representative sequences used in RDP5.
DOI: 10.6084/m9.figshare.26704794.v1
title: Additional file 1 of Recombination analysis on the receptor switching event of MERS-CoV and its close relatives: implications for the emergence of MERS-CoV

description: Additional file 1: Table S1. Representative of merbecoviruses classified according to their strain name, GenBank accession number, host, country, group, and the representative sequences used in RDP5.
DOI: 10.6084/m9.figshare.26704797
title: Additional file 2 of Recombination analysis on the receptor switching event of MERS-CoV and its close relatives: implications for the emergence of MERS-CoV

description: Additional file 2: Table S2. List of putative recombination events detected by at least six statistical methods implemented in RDP5.
DOI: 10.6084/m9.figshare.26704797.v1
title: Additional file 2 of Recombination analysis on the receptor switching event of MERS-CoV and its close relatives: implications for the emergence of MERS-CoV

description: Additional file 2: Table S2. List of putative recombination events detected by at least six statistical methods implemented in RDP5.
DOI: 10.6084/m9.figshare.26704800
title: Additional file 3 of Recombination analysis on the receptor switching event of MERS-CoV and its close relatives: implications for the emergence of MERS-CoV

description: Additional file 3: Table S3. One recombination event identified in the spike gene of HCoV-EMC/2012.
DOI: 10.6084/m9.figshare.26704800.v1
title: Additional file 3 of Recombination analysis on the receptor switching event of MERS-CoV and its close relatives: implications for the emergence of MERS-CoV

description: Additional file 3: Table S3. One recombination event identified in the spike gene of HCoV-EMC/2012.
DOI: 10.6084/m9.figshare.27368823.v2
title: <b>Symbiosis type in nitrogen fixing trees determines greenhouse gas emissions: a global meta-analysis</b>

description: 固氮树因其在改善土壤质量和固碳方面的优势而被广泛用于人工造林和农林业生态系统。然而，相对于非固定树，固氮树对 N<sub>2</sub>O、CH<sub>4</sub>和 CO<sub>2 </sub>通量的影响仍不确定。我们使用 meta 分析来发现这一重要的知识差距。附上了本研究的具体描述以及相关的数据集和代码。
DOI: 10.6084/m9.figshare.28380377
title: Supplementary Material for: Diversity in United States dementia prevention trials: An updated systematic review of eligibility criteria and recruitment strategies

description: Introduction: Given the elevated dementia risk in underrepresented demographic groups in the US—particularly in Latino and Non-Latino Black individuals compared to Non-Latino White individuals—it is vital that these groups are well-represented in dementia prevention research. Eligibility criteria and recruitment strategies may play a key role in promoting participant diversity. The aim of this review was to examine eligibility criteria and recruitment strategies in US dementia prevention trials in light of participant diversity.

Methods: A systematic review was conducted using Medline (including PubMed), Embase, Cochrane Library and CINAHL. We explored the percent White participants for trials using vs. not using a specific eligibility criterion or recruitment strategy using Hodges-Lehmann median difference estimation.

Results: Of forty-four studies meeting the inclusion criteria, twenty-seven reported on racial/ethnic diversity. Analyses demonstrated that criteria regarding cardiovascular disease, pulmonary disease, hearing impairment, and sedentary lifestyle were associated with relatively high participant diversity, while gastro-intestinal/liver disease, motivation to participate, and language proficiency criteria were associated with relatively little diversity. Information on recruitment strategies was often lacking. Three studies described recruitment efforts explicitly aimed at increasing diversity. Recruitment strategies associated with relatively high racial/ethnic diversity included recruitment via referral/word-of-mouth, television/radio advertising, and recruitment at church.

Conclusion: Eligibility criteria could be improved by revisiting and revising how they are defined (e.g. motivation to participate). Regarding recruitment, several recommendations are provided, including 1) lifting barriers to study participation (e.g. through reimbursement), 2) collaborating with community partners, and 3) formally studying the effectiveness of recruitment strategies.
DOI: 10.15468/dl.nsy4s5
title: Occurrence Download

description: A dataset containing 1597 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Primula sikkimensis Hook."
 ]
}

 The dataset includes 1597 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022206-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wzw2qf
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gastrolobium ilicifolium Meisn."
 ]
}

 The dataset includes 108 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022207-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc28wwfh
title: CCDC 2112167: Experimental Crystal Structure Determination

description: Related Article: Yazhou Li, Yu Zhang, Tao Yu, Qiangqiang Chen, Hong Liu, Jiang Wang|2025|Org.Lett.|27|874|doi:10.1021/acs.orglett.4c04610
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2czl54
title: CCDC 2204136: Experimental Crystal Structure Determination

description: Related Article: Yazhou Li, Yu Zhang, Tao Yu, Qiangqiang Chen, Hong Liu, Jiang Wang|2025|Org.Lett.|27|874|doi:10.1021/acs.orglett.4c04610
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f43wl
title: CCDC 2238289: Experimental Crystal Structure Determination

description: Related Article: Ze-Le Chen, Claire Empel, Yang Xie, Rene M. Koenigs, Jun Xuan|2025|Org.Lett.|27|892|doi:10.1021/acs.orglett.4c04667
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f43xm
title: CCDC 2238290: Experimental Crystal Structure Determination

description: Related Article: Ze-Le Chen, Claire Empel, Yang Xie, Rene M. Koenigs, Jun Xuan|2025|Org.Lett.|27|892|doi:10.1021/acs.orglett.4c04667
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f43yn
title: CCDC 2238291: Experimental Crystal Structure Determination

description: Related Article: Ze-Le Chen, Claire Empel, Yang Xie, Rene M. Koenigs, Jun Xuan|2025|Org.Lett.|27|892|doi:10.1021/acs.orglett.4c04667
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h8t1n
title: CCDC 2302371: Experimental Crystal Structure Determination

description: Related Article: Jiahua Wang, Na Ji, Zifeng Gao, Xiang-Ying Tang, Long Wang|2025|Org.Lett.|27|821|doi:10.1021/acs.orglett.4c04374
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kmh5w
title: CCDC 2372218: Experimental Crystal Structure Determination

description: Related Article: Yao Xiao, Dong-Wei Huang, Jie Liao, Bei Wang, Yu-Long Li, Ji-Yu Wang|2025|Org.Lett.|27|814|doi:10.1021/acs.orglett.4c04492
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.5z7zad
title: Occurrence Download

description: A dataset containing 176 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Pomacea canaliculata (Lamarck, 1822)"
 ]
}

 The dataset includes 176 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022208-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2l0sm1
title: CCDC 2384043: Experimental Crystal Structure Determination

description: Related Article: Sayan Ray, Deepak Behera, Mahesh Singh Harariya, Subrata Das, Pradip K. Tarafdar, Santanu Mukherjee|2025|J.Am.Chem.Soc.|147|2523|doi:10.1021/jacs.4c13713
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l0sn2
title: CCDC 2384044: Experimental Crystal Structure Determination

description: Related Article: Sayan Ray, Deepak Behera, Mahesh Singh Harariya, Subrata Das, Pradip K. Tarafdar, Santanu Mukherjee|2025|J.Am.Chem.Soc.|147|2523|doi:10.1021/jacs.4c13713
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.14198151
title: Antimycobacterial Activities of the Zanthoxylum leprieurii Metabolite Adubangoamide and non-natural Fagaramide Analogs

description: Record contains primary NMR files (FID) for all compounds
DOI: 10.5281/zenodo.14198152
title: Antimycobacterial Activities of the Zanthoxylum leprieurii Metabolite Adubangoamide and non-natural Fagaramide Analogs

description: Record contains primary NMR files (FID) for all compounds
DOI: 10.5281/zenodo.12158294
title: [PART 3] How to fit a round peg in a square hole: Pseudomonas aeruginosa acyl-CoA dehydrogenases and structure-guided inversion of their substrate specificity.

description: Metadynamics data for the PaFADE1

1320- PaFadE1 8PNS noCoA +FAD + G129M A295E - metadynamics, 10A3 OPLS4 T3P1321- PaFadE1 8PNS noCoA +FAD WT - metadynamics, 10A3 OPLS4 T3P
DOI: 10.5281/zenodo.12158295
title: [PART 3] How to fit a round peg in a square hole: Pseudomonas aeruginosa acyl-CoA dehydrogenases and structure-guided inversion of their substrate specificity.

description: Metadynamics data for the PaFADE1

1320- PaFadE1 8PNS noCoA +FAD + G129M A295E - metadynamics, 10A3 OPLS4 T3P1321- PaFadE1 8PNS noCoA +FAD WT - metadynamics, 10A3 OPLS4 T3P
DOI: 10.5281/zenodo.12085843
title: [PART 2] How to fit a round peg in a square hole: Pseudomonas aeruginosa acyl-CoA dehydrogenases and structure-guided inversion of their substrate specificity.

description: Classical unbiased molecular dynamics dataset generated with Maestro 2023.4

1320- PaFadE1 8PNS noCoA +FAD + G129M A295E, 10A3 OPLS4 T3P1321- PaFadE1 8PNS noCoA +FAD WT, 10A3 OPLS4 T3P
DOI: 10.5281/zenodo.12085844
title: [PART 2] How to fit a round peg in a square hole: Pseudomonas aeruginosa acyl-CoA dehydrogenases and structure-guided inversion of their substrate specificity.

description: Classical unbiased molecular dynamics dataset generated with Maestro 2023.4

1320- PaFadE1 8PNS noCoA +FAD + G129M A295E, 10A3 OPLS4 T3P1321- PaFadE1 8PNS noCoA +FAD WT, 10A3 OPLS4 T3P
DOI: 10.15468/dl.x9j2hs
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hexastylis virginica (L.) Small, Asarum virginianum Crantz, Homotropa macranthum Schuttl. ex Small, Asarum memmingeri Ashe, Asarum maculosum Stokes, Homotropa macranthum Schuttl., Asarum macanthum Small, Asarum virginicum L., Asarum grandiflorum Klotzsch, Hexastylis memmingeri (Ashe) Small, Heterotropa virginica (L.) A.Gray)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 32 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022209-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6s4gn4
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((6.35779 44.48039,6.39593 44.4505,6.45262 44.4273,6.50416 44.43168,6.54075 44.46055,6.54281 44.52368,6.53096 44.54481,6.47968 44.54558,6.43355 44.5412,6.39103 44.52136,6.35779 44.48039))",
 "TaxonKey is Lacerta agilis Linnaeus, 1758"
 ]
}

 The dataset includes 14 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022210-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14836287
title: Riverine Inherent Optical Properties

description: Bulk Inherent Optical Properties (IOPs): absorption (a; m^−1), backscattering (bb; m^−1) and water turbidity (FNU) at Pontelagoscuro (from S2-MSI) and Ca’Zuliani (from S2-MSI) to be compared with IOPs off the river mouth from S2-MSI and S3-OLCI
DOI: 10.5281/zenodo.14836288
title: Riverine Inherent Optical Properties

description: Bulk Inherent Optical Properties (IOPs): absorption (a; m^−1), backscattering (bb; m^−1) and water turbidity (FNU) at Pontelagoscuro (from S2-MSI) and Ca’Zuliani (from S2-MSI) to be compared with IOPs off the river mouth from S2-MSI and S3-OLCI
DOI: 10.5281/zenodo.14842890
title: Data on soil-microbial carbon, nitrogen, and phosphorus within soil profiles at different reclamation years in mining areas
DOI: 10.5281/zenodo.14842891
title: Data on soil-microbial carbon, nitrogen, and phosphorus within soil profiles at different reclamation years in mining areas
DOI: 10.15468/dl.t4en3q
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is White shark tagging off New Zealand"
 ]
}

 The dataset's 1 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022202-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.scfvvq
title: Occurrence Download

description: A dataset containing 11743 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Anredera cordifolia (Ten.) Steenis, Boussingaultia gracilis Miers, Boussingaultia gracilis f. pseudobaselloides Hauman, Boussingaultia cordata Spreng., Anredera americana J.St.-Hil., Boussingaultia gracilis f. typica Hauman, Boussingaultia baselloides Hook., Boussingaultia cordifolia Ten., Anredera cordifolia subsp. gracilis (Miers) Xifreda & Argimón, Boussingaultia gracilis var. pseudobaselloides (Hauman) L.H.Bailey, Boussingaultia gracilis subsp. pseudobaselloides (Hauman) Bailey, Andredera cordifolia (Ten.) Steenis)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 11743 records from 189 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022211-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.