cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13913414
title: Single-molecule analysis of transcription activation: dynamics of SAGA co-activator recruitment

description: Source data for:

Single-molecule analysis of transcription activation: dynamics of SAGA co-activator recruitment

 

Jongcheol Jeon1, Larry J. Friedman2, Daniel H. Zhou2, Hogyu David Seo1, Oluwatobi A. Adeleke3, Bria Graham3, Emily F. Patteson3, Jeff Gelles2*, and Stephen Buratowski1,*

 

1Department of Biological Chemistry and Molecular Pharmacology,

Harvard Medical School, Boston, MA 02115

2 Department of Biochemistry, Brandeis University, Waltham, MA 02454

3 EpiCypher Inc., Durham NC 27709

 

*Corresponding authors

Lead author contact information:

steveb@hms.harvard.edu

 

 

The source data for the single molecule experiments are provided as "intervals" files and "CoSMoS parameters", which can be read and manipulated using the publicly available programs "Imscroll" and "Tapqir", respectively:

https://github.com/gelles-brandeis/CoSMoS_Analysis

https://github.com/gelles-brandeis/tapqir
DOI: 10.15468/dl.cspy38
title: Occurrence Download

description: A dataset containing 1616 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Panicum subalbidum Kunth",
 "Continent is Africa"
 ]
}

 The dataset includes 1616 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008572-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4htgwt
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Basilia manu Guerrero, 1996"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008574-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9bva2r
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atelopus tamaense La Marca, García-Pérez & Renjifo, 1990"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008575-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f5vj7d
title: Occurrence Download

description: A dataset containing 52961 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Vespa velutina nigrithorax Buysson, 1905"
 ]
}

 The dataset includes 52961 records from 162 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008573-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lmbk7h
title: Occurrence Download

description: A dataset containing 2259 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Panthera onca (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2259 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019217-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xobo9i
title: Occurrence Download

description: A dataset containing 387 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Suivi des oiseaux de passage : programme ACT - Programme ACT : Répartition Caille des blés 2011 - 2015 Coordonnées GPS Lambert 93"
 ]
}

 The dataset includes 387 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025737-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pg4tih
title: Occurrence Download

description: A dataset containing 376 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is United States of America",
 "TaxonKey is Urocitellus canus (Merriam, 1898)"
 ]
}

 The dataset includes 376 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008058-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.10srze
title: Occurrence Download

description: A dataset containing 11033603 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is iNaturalist Research-grade Observations"
 ]
}

 The dataset includes 11033603 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019204-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dzj1os
title: Occurrence Download

description: A dataset containing 540 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Suivi des oiseaux de passage : programme ACT - Programme ACT : Répartition Etourneau sansonnet 2008 - 2012 Coordonnées GPS Lambert 93"
 ]
}

 The dataset includes 540 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025753-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sy29a5
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is 6f3ccc65-0a54-4e65-ae7e-13b92d618e7c",
 "TaxonKey is Otanthus maritimus (L.) Hoffmanns. & Link"
 ]
}

 The dataset includes 49 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025086-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.65vbvl
title: Occurrence Download

description: A dataset containing 6659 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Estudio taxonómico y base de datos del género Muhlenbergia de México"
 ]
}

 The dataset includes 6659 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015249-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rozqh8
title: Occurrence Download

description: A dataset containing 742 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Suivi des oiseaux de passage : programme ACT - Programme ACT : Répartition Grive draine 2010 - 2014 Coordonnées GPS Lambert 93"
 ]
}

 The dataset includes 742 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025788-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xagae7
title: Occurrence Download

description: A dataset containing 4439 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Occurrence data set of Non-Timber Forest Products species for medicinal purposes in Zimbabwe’s biodiversity hotspots"
 ]
}

 The dataset includes 4439 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047411-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.icnhiy
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anomala robinsoni Potts, 1974"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027608-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.illkd0
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Uganda",
 "Country is Tanzania, United Republic of",
 "Country is Rwanda"
 ]
 },
 "Year 2000-2020",
 "HasCoordinate is true",
 "TaxonKey is Pan troglodytes schweinfurthii (Giglioli, 1872)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 61 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012680-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.iytay0
title: Occurrence Download

description: A dataset containing 724 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Suivi des oiseaux de passage : programme ACT - Programme ACT : Répartition Faisan commun 2009 - 2013 Coordonnées GPS Lambert 93"
 ]
}

 The dataset includes 724 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025763-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cz7pwt
title: Occurrence Download

description: A dataset containing 25333 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Western Palearctic migratory birds in continental Africa"
 ]
}

 The dataset includes 25333 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019225-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kg92cq
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"3859650","matchCase":false},{"type":"equals","key":"MEDIA_TYPE","value":"StillImage","matchCase":false},{"type":"equals","key":"BASIS_OF_RECORD","value":"HUMANOBSERVATION","matchCase":false}]}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010097-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s5leqn
title: Occurrence Download

description: A dataset containing 1807 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1699-2020",
 "Geometry POLYGON((-82.55181 -8.44823,-71.99395 -8.44823,-71.99395 -4.22948,-82.55181 -4.22948,-82.55181 -8.44823))",
 "HasCoordinate is true",
 "TaxonKey is Myrtaceae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1807 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049752-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sntr5n
title: Occurrence Download

description: A dataset containing 2429 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Liriope spicata Lour.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2429 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055758-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1slot2
title: Occurrence Download

description: A dataset containing 515 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Blastocerus dichotomus (Illiger, 1815)"
 ]
}

 The dataset includes 515 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000662-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.auts1u
title: Occurrence Download

description: A dataset containing 4066 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carpinus caroliniana Walter",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4066 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000829-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.udcvrp
title: Occurrence Download

description: A dataset containing 7500 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia auriculiformis A.Cunn. ex Benth.",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 7500 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001283-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oo4wat
title: Occurrence Download

description: A dataset containing 1463 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is United States of America",
 "Country is Mexico"
 ]
 },
 {
 "or" : [
 "Issue is Zero coordinate",
 "Issue is Coordinate out of range",
 "Issue is Coordinate rounded",
 "Issue is Geodetic datum invalid",
 "Issue is Geodetic datum assumed WGS84",
 "Issue is Coordinate reprojected",
 "Issue is Coordinate reprojection failed",
 "Issue is Coordinate reprojection suspicious",
 "Issue is Coordinate accuracy invalid",
 "Issue is Coordinate precision invalid",
 "Issue is Coordinate uncertainty meters invalid",
 "Issue is Coordinate precision/uncertainty mismatch",
 "Issue is Country coordinate mismatch",
 "Issue is Country mismatch",
 "Issue is Country invalid",
 "Issue is Country derived from coordinates",
 "Issue is Continent country mismatch",
 "Issue is Continent invalid",
 "Issue is Continent derived from coordinates",
 "Issue is Presumed swapped coordinate",
 "Issue is Presumed negated longitude",
 "Issue is Presumed negated latitude",
 "Issue is Recorded date mismatch",
 "Issue is Recorded date invalid",
 "Issue is Recorded date unlikely",
 "Issue is Taxon match fuzzy",
 "Issue is Taxon match higher rank",
 "Issue is Taxon match none",
 "Issue is Depth not metric",
 "Issue is Depth unlikely",
 "Issue is Depth min max swapped",
 "Issue is Depth non numeric",
 "Issue is Elevation unlikely",
 "Issue is Elevation min max swapped",
 "Issue is Elevation not metric",
 "Issue is Elevation non numeric",
 "Issue is Modified date invalid",
 "Issue is Modified date unlikely",
 "Issue is Identified date unlikely",
 "Issue is Identified date invalid",
 "Issue is Basis of record invalid",
 "Issue is Type status invalid",
 "Issue is Multimedia date invalid",
 "Issue is Multimedia URI invalid",
 "Issue is References URI invalid",
 "Issue is Error during interpretation",
 "Issue is Individual count invalid"
 ]
 },
 "TaxonKey is Helianthus petiolaris Nutt."
 ]
}

 The dataset includes 1463 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000662-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hrorls
title: Occurrence Download

description: A dataset containing 4180 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elaeis guineensis Jacq."
 ]
}

 The dataset includes 4180 records from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001453-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7fzhte
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Herpestes fuscus Waterhouse, 1838"
 ]
}

 The dataset includes 38 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002773-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ngveq
title: Occurrence Download

description: A dataset containing 37695 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Canis latrans Say, 1823"
 ]
}

 The dataset includes 37695 records from 168 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094556-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c0outi
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"3866733","matchCase":false},{"type":"equals","key":"MEDIA_TYPE","value":"StillImage","matchCase":false},{"type":"equals","key":"BASIS_OF_RECORD","value":"HUMANOBSERVATION","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010104-200221144449610/datasets/export for details.
DOI: 10.15468/dl.nh7zqa
title: Occurrence Download

description: A dataset containing 610 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leipomeles Möbius, 1856"
 ]
}

 The dataset includes 610 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028712-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5qp2z6
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tolypeutes tricinctus (Linnaeus, 1758)"
 ]
}

 The dataset includes 36 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094575-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mwfqvp
title: Occurrence Download

description: A dataset containing 8474604 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Bird tracking - GPS tracking of Lesser Black-backed Gulls and Herring Gulls breeding at the southern North Sea coast"
 ]
}

 The dataset includes 8474604 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037809-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v9q6aw
title: Occurrence Download

description: A dataset containing 7447 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Amphibia",
 "TaxonKey is Aves",
 "TaxonKey is Insecta",
 "TaxonKey is Reptilia",
 "TaxonKey is Mammalia",
 "TaxonKey is Chilopoda",
 "TaxonKey is Diplopoda",
 "TaxonKey is Arachnida"
 ]
 },
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation"
 ]
 },
 "HasCoordinate is true",
 "DecimalLongitude is greater than or equal to 15.000000",
 "DecimalLongitude is less than 20.000000",
 "DecimalLatitude is greater than or equal to 35.000000",
 "DecimalLatitude is less than 40.000000",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2018"
 ]
}

 The dataset includes 7447 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001283-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1enjb6
title: Occurrence Download

description: A dataset containing 17553804 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Mexico"
 ]
}

 The dataset includes 17553804 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008059-200127171203522/datasets/export for details.
DOI: 10.15468/dl.ev18cr
title: Occurrence Download

description: A dataset containing 327 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Baikiaea plurijuga Harms"
 ]
}

 The dataset includes 327 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094592-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oh3fb2
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "DatasetKey is Museo Argentino de Ciencias Naturales \"Bernardino Rivadavia\" (MACN). Ichthyology National Collection (MACNIct)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001283-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nvwmu7
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Symphytum davisii Wickens"
 ]
}

 The dataset includes 39 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047412-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bldmup
title: Occurrence Download

description: A dataset containing 574 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pterocarpus angolensis DC."
 ]
}

 The dataset includes 574 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094594-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ifysll
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"3859786","matchCase":false},{"type":"equals","key":"MEDIA_TYPE","value":"StillImage","matchCase":false},{"type":"equals","key":"BASIS_OF_RECORD","value":"HUMANOBSERVATION","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010121-200221144449610/datasets/export for details.
DOI: 10.15468/dl.a5gyri
title: Occurrence Download

description: A dataset containing 63547 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ciconia nigra (Linnaeus, 1758)"
 ]
}

 The dataset includes 63547 records from 227 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001283-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.