cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4878577
title: Pulumi TypeScript Projects Using Stack References

description: This dataset contains 64 distinct public repositories from GitHub, which were collected in February 2021. All of them are infrastructure as code (IaC) projects in Pulumi TypeScript that use stack references to connect with other Pulumi scripts. They create instance of pulumi.StackReference. Unfortunately, only 25 of the projects have a license that permits redistribution. Copies of them based on a snapshot at 2021-02-03 14:58 are included in this artifact. The remaining 39 projects can be downloaded based on the provided GitHub repository URL.


Contents



	
repos.txt: List of the 64 project repository URLs on GitHub.
	
repos.zip: Contains copies of the 25 repositories whose license permits redistribution.
DOI: 10.5281/zenodo.10221554
title: Dataset related to article "The impact of stereotactic ablative radiotherapy on oligoprogressive metastases from renal cell carcinoma"

description: This record contains raw data related to article "The impact of stereotactic ablative radiotherapy on oligoprogressive metastases from renal cell carcinoma"
 Abstract
Background: Renal cell carcinoma (RCC) represents 80-90% of all kidney tumors and about 15-25% of patients will develop distant metastases. Systemic therapy represents the standard of care for metastatic patients, but stereotactic ablative radiotherapy (SABR) may play a relevant role in the oligoprogressive setting, defined as the progression of few metastases during an ongoing systemic therapy on a background of otherwise stable disease. Aim of the present study was to analyze the outcome of RCC patients treated with SABR on oligoprogressive metastases.
Materials and methods: In this monocenter study, we analyzed patients affected by RCC treated with SABR on a maximum of 5 cranial or extracranial oligoprogressive sites of disease. Endpoints were overall survival (OS), progression-free survival (PFS), and toxicity.
Results: We included 74 oligoprogressions (26 intracranial and 48 extracranial) and 57 SABR treatments in 44 patients. Most common concomitant treatments were sunitinib (28, 49.1%), pazopanib (12, 21.0%) and nivolumab (11, 19.3%). Median follow-up was 19.0 months, and 1- and 2-year OS rates were 79.2% and 57.3%, respectively. Repeated SABR was a positive predictive factor for OS (p = 0.034). Median PFS was 9.8 months, with 1- and 2-year rates of 43.2% and 25.8%. At multivariable analysis, disease-free interval (p = 0.022) and number of treated metastases (p = 0.007) were significant for PFS. About 80% of patients continued the ongoing systemic therapy 1- and 2-years after SABR with no grade 3 or 4 toxicities.
Conclusions: we confirmed the efficacy and safety of SABR for oligoprogression from RCC, with the potential to ablate resistant metastases and to prolong the ongoing systemic therapy
DOI: 10.5281/zenodo.10221553
title: Dataset related to article "The impact of stereotactic ablative radiotherapy on oligoprogressive metastases from renal cell carcinoma"

description: This record contains raw data related to article "The impact of stereotactic ablative radiotherapy on oligoprogressive metastases from renal cell carcinoma"
 Abstract
Background: Renal cell carcinoma (RCC) represents 80-90% of all kidney tumors and about 15-25% of patients will develop distant metastases. Systemic therapy represents the standard of care for metastatic patients, but stereotactic ablative radiotherapy (SABR) may play a relevant role in the oligoprogressive setting, defined as the progression of few metastases during an ongoing systemic therapy on a background of otherwise stable disease. Aim of the present study was to analyze the outcome of RCC patients treated with SABR on oligoprogressive metastases.
Materials and methods: In this monocenter study, we analyzed patients affected by RCC treated with SABR on a maximum of 5 cranial or extracranial oligoprogressive sites of disease. Endpoints were overall survival (OS), progression-free survival (PFS), and toxicity.
Results: We included 74 oligoprogressions (26 intracranial and 48 extracranial) and 57 SABR treatments in 44 patients. Most common concomitant treatments were sunitinib (28, 49.1%), pazopanib (12, 21.0%) and nivolumab (11, 19.3%). Median follow-up was 19.0 months, and 1- and 2-year OS rates were 79.2% and 57.3%, respectively. Repeated SABR was a positive predictive factor for OS (p = 0.034). Median PFS was 9.8 months, with 1- and 2-year rates of 43.2% and 25.8%. At multivariable analysis, disease-free interval (p = 0.022) and number of treated metastases (p = 0.007) were significant for PFS. About 80% of patients continued the ongoing systemic therapy 1- and 2-years after SABR with no grade 3 or 4 toxicities.
Conclusions: we confirmed the efficacy and safety of SABR for oligoprogression from RCC, with the potential to ablate resistant metastases and to prolong the ongoing systemic therapy
DOI: 10.6084/m9.figshare.24658710
title: Supplemental Data Physiological Reports

description: <i>Correlation table between pulmonary function test results and 1D computational outputs and QCT-based functional variables</i>
DOI: 10.6084/m9.figshare.24658710.v1
title: Supplemental Data Physiological Reports

description: <i>Correlation table between pulmonary function test results and 1D computational outputs and QCT-based functional variables</i>
DOI: 10.15468/zh7bvr
title: Forest Research Earthworm Records (UK)

description: This dataset includes earthworm records generated by research projects undertaken by Forest Research in England between 2016 and 2019.
DOI: 10.15468/38s6mv
title: Puntos de presencia en Baja California (Herps)

description: Puntos de presencia en Baja California (Herps) Reino: 1 Filo: 1 Clase: 2 Orden: 4 Familia: 18 Género: 32 Especie: 84
DOI: 10.25451/flinders.21709757.v1
title: <b>Dataset for a globally synthesised and flagged bee occurrence dataset and cleaning workflow</b>

description: Species occurrence data are foundational for research, conservation, and science communication, but the limited availability and accessibility of reliable data represents a major obstacle, particularly for insects, which face mounting pressures. We present <i>BeeBDC</i>, a new <i>R</i><i> </i>package, and a global bee occurrence dataset to address this issue. We combined &gt;18.3 million bee occurrence records from multiple public repositories (GBIF, SCAN, iDigBio, USGS, ALA) and smaller datasets, then standardised, flagged, deduplicated, and cleaned the data using the reproducible <i>BeeBDC</i><i>R</i>-workflow. Specifically, we harmonised species names (following established global taxonomy), country names, and collection dates and we added record-level flags for a series of potential quality issues. These data are provided in two formats, “cleaned” and “flagged-but-uncleaned”. The <i>BeeBDC</i> package with online documentation provides end users the ability to modify filtering parameters to address their research questions. By publishing reproducible <i>R</i><i> </i>workflows and globally cleaned datasets, we can increase the accessibility and reliability of downstream analyses. This workflow can be implemented for other taxa to support research and conservation.
DOI: 10.60508/12gh-qj87
title: The Human Burst Suppression Electroencephalogram of Deep Hypothermia

description: This repository contains the data and [code](https://github.com/bdsp-
core/Hypothermia-EEG/tree/main) to reproduce the results from "[The Human
Burst Suppression Electroencephalogram of Deep
Hypothermia](https://pubmed.ncbi.nlm.nih.gov/25649968/)". The paper
investigates the electroencephalogram (EEG) changes and burst suppression
patterns induced by deep hypothermia during cardiac surgery. The repository
includes the raw EEG recordings from 11 patients undergoing deep hypothermia,
as well as the code used for detection of bursts and suppression, spectral
analysis, and other analyses from the published manuscript. The results
support a model of cyclical metabolic depletion underlying burst suppression,
and suggest local micro-network dropout explains decreasing burst amplitudes
at lower temperatures.
DOI: 10.60508/gf89-y383
title: The Human Burst Suppression Electroencephalogram of Deep Hypothermia

description: This repository contains the data and [code](https://github.com/bdsp-
core/Hypothermia-EEG/tree/main) to reproduce the results from "[The Human
Burst Suppression Electroencephalogram of Deep
Hypothermia](https://pubmed.ncbi.nlm.nih.gov/25649968/)". The paper
investigates the electroencephalogram (EEG) changes and burst suppression
patterns induced by deep hypothermia during cardiac surgery. The repository
includes the raw EEG recordings from 11 patients undergoing deep hypothermia,
as well as the code used for detection of bursts and suppression, spectral
analysis, and other analyses from the published manuscript. The results
support a model of cyclical metabolic depletion underlying burst suppression,
and suggest local micro-network dropout explains decreasing burst amplitudes
at lower temperatures.
DOI: 10.5281/zenodo.10221780
title: Dataset related to article "Adaptive Volumetric-Modulated Arc Radiation Therapy for Head and Neck Cancer: Evaluation of Benefit on Target Coverage and Sparing of Organs at Risk"

description: This record contains raw data related to article "Adaptive Volumetric-Modulated Arc Radiation Therapy for Head and Neck Cancer: Evaluation of Benefit on Target Coverage and Sparing of Organs at Risk"
Abstract
Background: Radiotherapy is essential in the management of head-neck cancer. During the course of radiotherapy, patients may develop significant anatomical changes. Re-planning with adaptive radiotherapy may ensure adequate dose coverage and sparing of organs at risk. We investigated the consequences of adaptive radiotherapy on head-neck cancer patients treated with volumetric-modulated arc radiation therapy compared to simulated non-adaptive plans: Materials and methods: We included in this retrospective dosimetric analysis 56 patients treated with adaptive radiotherapy. The primary aim of the study was to analyze the dosimetric differences with and without an adaptive approach for targets and organs at risk, particularly the spinal cord, parotid glands, oral cavity and larynx. The original plan (OPLAN) was compared to the adaptive plan (APLAN) and to a simulated non-adaptive dosimetric plan (DPLAN).
Results: The non-adaptive DPLAN, when compared to OPLAN, showed an increased dose to all organs at risk. Spinal cord D2 increased from 27.91 (21.06-31.76) Gy to 31.39 (27.66-38.79) Gy (p = 0.00). V15, V30 and V45 of the DPLAN vs. the OPLAN increased by 20.6% (p = 0.00), 14.78% (p = 0.00) and 15.55% (p = 0.00) for right parotid; and 16.25% (p = 0.00), 18.7% (p = 0.00) and 20.19% (p = 0.00) for left parotid. A difference of 36.95% was observed in the oral cavity V40 (p = 0.00). Dose coverage was significantly reduced for both CTV (97.90% vs. 99.96%; p = 0.00) and PTV (94.70% vs. 98.72%; p = 0.00). The APLAN compared to the OPLAN had similar values for all organs at risk.
Conclusions: The adaptive strategy with re-planning is able to avoid an increase in dose to organs at risk and better target coverage in head-neck cancer patients, with potential benefits in terms of side effects and disease control.
DOI: 10.5281/zenodo.10221781
title: Dataset related to article "Adaptive Volumetric-Modulated Arc Radiation Therapy for Head and Neck Cancer: Evaluation of Benefit on Target Coverage and Sparing of Organs at Risk"

description: This record contains raw data related to article "Adaptive Volumetric-Modulated Arc Radiation Therapy for Head and Neck Cancer: Evaluation of Benefit on Target Coverage and Sparing of Organs at Risk"
Abstract
Background: Radiotherapy is essential in the management of head-neck cancer. During the course of radiotherapy, patients may develop significant anatomical changes. Re-planning with adaptive radiotherapy may ensure adequate dose coverage and sparing of organs at risk. We investigated the consequences of adaptive radiotherapy on head-neck cancer patients treated with volumetric-modulated arc radiation therapy compared to simulated non-adaptive plans: Materials and methods: We included in this retrospective dosimetric analysis 56 patients treated with adaptive radiotherapy. The primary aim of the study was to analyze the dosimetric differences with and without an adaptive approach for targets and organs at risk, particularly the spinal cord, parotid glands, oral cavity and larynx. The original plan (OPLAN) was compared to the adaptive plan (APLAN) and to a simulated non-adaptive dosimetric plan (DPLAN).
Results: The non-adaptive DPLAN, when compared to OPLAN, showed an increased dose to all organs at risk. Spinal cord D2 increased from 27.91 (21.06-31.76) Gy to 31.39 (27.66-38.79) Gy (p = 0.00). V15, V30 and V45 of the DPLAN vs. the OPLAN increased by 20.6% (p = 0.00), 14.78% (p = 0.00) and 15.55% (p = 0.00) for right parotid; and 16.25% (p = 0.00), 18.7% (p = 0.00) and 20.19% (p = 0.00) for left parotid. A difference of 36.95% was observed in the oral cavity V40 (p = 0.00). Dose coverage was significantly reduced for both CTV (97.90% vs. 99.96%; p = 0.00) and PTV (94.70% vs. 98.72%; p = 0.00). The APLAN compared to the OPLAN had similar values for all organs at risk.
Conclusions: The adaptive strategy with re-planning is able to avoid an increase in dose to organs at risk and better target coverage in head-neck cancer patients, with potential benefits in terms of side effects and disease control.
DOI: 10.6084/m9.figshare.24658830
title: Data forearm fractures

description: Excel files of data used to quantify forearm and elbow fractures.
DOI: 10.6084/m9.figshare.24658830.v1
title: Data forearm fractures

description: Excel files of data used to quantify forearm and elbow fractures.
DOI: 10.6084/m9.figshare.21027921
title: Reduction of PAPR in OTFS using rooting companding techniques

description: Peak-to-average power ratio (PAPR) is one of the major limitations of an orthogonal time frequency space (OTFS) system. To reduce the PAPR, this paper proposes three companding techniques, namely, logarithmic rooting companding, rooting companding, and rooting-based μ-law companding. This paper also presents the preferable range of rooting parameter through the analysis of variation of PAPR and bit error rate (BER) with respect to the rooting parameter. To assess the performance of the proposed companding techniques, simulations are carried out by considering various number of delay and Doppler bins. The simulation results reveal that all the proposed techniques provide better PAPR performance than the existing μ-law companding.
DOI: 10.6084/m9.figshare.21027921.v1
title: Reduction of PAPR in OTFS using rooting companding techniques

description: Peak-to-average power ratio (PAPR) is one of the major limitations of an orthogonal time frequency space (OTFS) system. To reduce the PAPR, this paper proposes three companding techniques, namely, logarithmic rooting companding, rooting companding, and rooting-based μ-law companding. This paper also presents the preferable range of rooting parameter through the analysis of variation of PAPR and bit error rate (BER) with respect to the rooting parameter. To assess the performance of the proposed companding techniques, simulations are carried out by considering various number of delay and Doppler bins. The simulation results reveal that all the proposed techniques provide better PAPR performance than the existing μ-law companding.
DOI: 10.5281/zenodo.10221744
title: Source Data for the paper: "The nature of carotenoid S* state and its role in the nonphotochemical quenching of plants"

description: This dataset contains the raw data for the results shown in the paper.
description: For each figure in the paper, one directory with data file(s) is provided. The complete list of data files is as follows: 
- fig_2/Fig_2a-data.txt
- fig_2/Fig_2b-data.txt
- fig_3/Fig_3a-data.txt
- fig_3/Fig_3b-data.txt
- fig_3/Fig_3c-data.txt
- fig_3/Fig_3d-data.txt
- fig_3/Fig_3e-data.txt
- fig_3/Fig_3f-data.txt
- fig_4/Fig_4a-data.txt
- fig_4/Fig_4b-data.txt
- fig_4/Fig_4c-data.txt
- fig_4/Fig_4d-data.txt
- fig_5/Fig_5a-data.txt
- fig_5/Fig_5b-data.txt
- fig_5/Fig_5c-data.txt
- fig_5/Fig_5d-data.txt
- fig_6/Fig_6a-data.txt
- fig_6/Fig_6b-data.txt
- fig_6/Fig_6c-data.txt
- fig_6/Fig_6d-data.txt
- fig_6/Fig_6e-data.txt
- fig_6/Fig_6f-data.txt
- fig_S3/Fig_S3a-data.txt
- fig_S3/Fig_S3b-data.txt
- fig_S4/Fig_S4ab-data.txt
- fig_S4/Fig_S4cd-data.txt
- fig_S4/Fig_S4ef-data.txt
- fig_S4/Fig_S4gh-data.txt
- fig_S5/Fig_S5a-data.txt
- fig_S5/Fig_S5b-data.txt
- fig_S5/Fig_S5c-data.txt
- fig_S5/Fig_S5d-data.txt
- fig_S6/Fig_S6-data.txt
- fig_S7/Fig_S7-data.txt
- fig_S8/Fig_S8-data.txt
- fig_S9/Fig_S9a-data.txt
- fig_S9/Fig_S9b-data.txt
- fig_S9/Fig_S9c-data.txt
- fig_S9/Fig_S9d-data.txt
- fig_S10/Fig_S10-data.txt
- fig_S11/Fig_S11-data.txt
- fig_S12/Fig_S12-data.txt
- fig_S13/Fig_S13-data.txt
- fig_S14/Fig_S14-data.txt
- fig_S15/Fig_S15-data.txt
DOI: 10.5281/zenodo.10221745
title: Source Data for the paper: "The nature of carotenoid S* state and its role in the nonphotochemical quenching of plants"

description: This dataset contains the raw data for the results shown in the paper.
description: For each figure in the paper, one directory with data file(s) is provided. The complete list of data files is as follows: 
- fig_2/Fig_2a-data.txt
- fig_2/Fig_2b-data.txt
- fig_3/Fig_3a-data.txt
- fig_3/Fig_3b-data.txt
- fig_3/Fig_3c-data.txt
- fig_3/Fig_3d-data.txt
- fig_3/Fig_3e-data.txt
- fig_3/Fig_3f-data.txt
- fig_4/Fig_4a-data.txt
- fig_4/Fig_4b-data.txt
- fig_4/Fig_4c-data.txt
- fig_4/Fig_4d-data.txt
- fig_5/Fig_5a-data.txt
- fig_5/Fig_5b-data.txt
- fig_5/Fig_5c-data.txt
- fig_5/Fig_5d-data.txt
- fig_6/Fig_6a-data.txt
- fig_6/Fig_6b-data.txt
- fig_6/Fig_6c-data.txt
- fig_6/Fig_6d-data.txt
- fig_6/Fig_6e-data.txt
- fig_6/Fig_6f-data.txt
- fig_S3/Fig_S3a-data.txt
- fig_S3/Fig_S3b-data.txt
- fig_S4/Fig_S4ab-data.txt
- fig_S4/Fig_S4cd-data.txt
- fig_S4/Fig_S4ef-data.txt
- fig_S4/Fig_S4gh-data.txt
- fig_S5/Fig_S5a-data.txt
- fig_S5/Fig_S5b-data.txt
- fig_S5/Fig_S5c-data.txt
- fig_S5/Fig_S5d-data.txt
- fig_S6/Fig_S6-data.txt
- fig_S7/Fig_S7-data.txt
- fig_S8/Fig_S8-data.txt
- fig_S9/Fig_S9a-data.txt
- fig_S9/Fig_S9b-data.txt
- fig_S9/Fig_S9c-data.txt
- fig_S9/Fig_S9d-data.txt
- fig_S10/Fig_S10-data.txt
- fig_S11/Fig_S11-data.txt
- fig_S12/Fig_S12-data.txt
- fig_S13/Fig_S13-data.txt
- fig_S14/Fig_S14-data.txt
- fig_S15/Fig_S15-data.txt
DOI: 10.5281/zenodo.10221652
title: Namelist files and settings for multi-year km-scale nextGEMS Cycle 3 simulations with IFS-FESOM/NEMO

description: This dataset contains the used atmosphere, land, wave, and ocean model namelist files and settings for the multi-year km-scale nextGEMS Cycle 3 simulations with IFS-FESOM (TCo2559 atmosphere at 4.4km resolution + 5km ocean; TCo1279 atmosphere at 9km resolution + 5km ocean) and IFS-NEMO (TCo1279 atmosphere at 9km resolution, 0.25 degree ocean) as described in the study
Rackow, Pedruzo-Bagazgoitia, Becker, Milinski, Sandu et al. : Multi-year simulations at kilometre scale with the Integrated Forecasting System coupled to FESOM2.5/NEMOV3.4
This work was supported by the European Union's Horizon 2020 collaborative project NextGEMS (grant number 101003470). For more infos about the nextGEMS project, see https://nextgems-h2020.eu (last access: 29.11.2023)
DOI: 10.5281/zenodo.10221651
title: Namelist files and settings for multi-year km-scale nextGEMS Cycle 3 simulations with IFS-FESOM/NEMO

description: This dataset contains the used atmosphere, land, wave, and ocean model namelist files and settings for the multi-year km-scale nextGEMS Cycle 3 simulations with IFS-FESOM (TCo2559 atmosphere at 4.4km resolution + 5km ocean; TCo1279 atmosphere at 9km resolution + 5km ocean) and IFS-NEMO (TCo1279 atmosphere at 9km resolution, 0.25 degree ocean) as described in the study
Rackow, Pedruzo-Bagazgoitia, Becker, Milinski, Sandu et al. : Multi-year simulations at kilometre scale with the Integrated Forecasting System coupled to FESOM2.5/NEMOV3.4
This work was supported by the European Union's Horizon 2020 collaborative project NextGEMS (grant number 101003470). For more infos about the nextGEMS project, see https://nextgems-h2020.eu (last access: 29.11.2023)
DOI: 10.5281/zenodo.10221964
title: Dataset related to article "Total tumor volume as a predictor of survival in patients with multiple oligometastases treated with stereotactic ablative radiotherapy (SABR)"

description: This record contains raw data related to article "Total tumor volume as a predictor of survival in patients with multiple oligometastases treated with stereotactic ablative radiotherapy (SABR)"
Abstract
Background: Delivering stereotactic ablative radiotherapy (SABR) in patients with multiple oligometastases represents a challenge for clinical and technical reasons. We aimed to evaluate the outcome of patients affected by multiple oligometastases treated with SABR and the impact of tumor volume on survival.
Materials and methods: We included all the patients treated with single course SABR for 3 to 5 extracranial oligometastases. All patients were treated with the volumetric modulated arc therapy (VMAT) technique with ablative intent. End-points of the analysis were overall survival (OS), progression free survival (PFS), local control (LC) and toxicity.
Results: 136 patients were treated from 2012 to 2020 on 451 oligometastases. Most common primary tumor was colorectal cancer (44.1%) followed by lung cancer (11.8%). A total of 3, 4 and 5 lesions were simultaneously treated in 102 (75.0%), 26 (19.1%), and 8 (5.9%) patients, respectively. Median total tumor volume (TTV) was 19.1 cc (range 0.6-245.1). With a median follow-up of 25.0 months, OS at 1 and 3 years was 88.4% and 50.2%, respectively. Increasing TTV was independent predictive factor of worse OS (HR 2.37, 95% CI 1.18-4.78, p = 0.014) and PFS (HR 1.63, 95% CI 1.05-2.54; p = 0.028). Median OS was 80.6 months if tumor volume was ≤ 10 cc (1 and 3 years OS rate 93.6% and 77.5%, respectively), and 31.1 months if TTV was higher than 10 cc (1 and 3 years OS rate 86.7% and 42.3%, respectively). Rates of LC at 1 and 3 years were 89.3% and 76.5%. In terms of toxicity, no grade 3 or higher toxicity was reported both in the acute and late settings.
Conclusion: We demonstrated the impact of tumor volume on survival and disease control of patients affected by multiple oligometastases treated with single course SABR