cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.941474
title: Seawater carbonate chemistry and competition for growth, photosynthetic performance and biochemical composition in Neopyropia yezoensis and Ulva prolifera

description: The occurrence of various marine macroalgae in the same niche will inevitably lead to interspecific competition due to similar environmental requirements. With the increasing global atmospheric CO2 concentration, the resulting ocean acidification can potentially influence competition among macroalgae in the future. Neopyropia yezoensis (Rhodophyta, formerly Pyropia yezoensis) and the epiphytic alga Ulva prolifera (Chlorophyta) were selected for investigating competition among macroalgae grown under different CO2 conditions. The results showed that when cultured with U. prolifera, N. yezoensis' growth rate was significantly inhibited along with a sharp decrease in net photosynthetic rate. Although CO2 decreased the growth rate of N. yezoensis, it enhanced the resistance of the alga to the allelopathic effect of U. prolifera. While no difference was found between U. prolifera grown in monoculture and biculture, strong competitive ability was observed. CO2 could enhance this ability with higher net photosynthetic rate. However, CO2 significantly inhibited the carotenoid synthesis in both plants. This inhibition in N. yezoensis was more pronounced in the presence of U. prolifera. Biculture promoted the accumulation of soluble protein in N. yezoensis while it inhibited the process in U. prolifera. In addition, it enhanced the inhibitory effect of acidification on soluble carbohydrates of both plants. Elevated CO2 levels alleviated the competition between N. yezoensis and U. prolifera, but the latter can become the more competitive epiphytic alga which can impact the future of nori culture.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-2-24.
DOI: 10.1594/pangaea.941521
title: Seawater carbonate chemistry and larval development in domesticated and naturalized stocks of the Pacific oyster Crassostrea gigas

description: Ocean acidification (OA) has had significant negative effects on oyster populations on the west coast of North America over the past decade. Many studies have focused on the physiological challenges experienced by young oyster larvae in high pCO2/low pH seawater with reduced aragonite saturation state (Omega arag), which is characteristic of OA. Relatively few, by contrast, have evaluated these impacts upon fitness traits across multiple larval stages and between discrete oyster populations. In this study, we conducted 2 replicated experiments, in 2015 and 2016, using larvae from naturalized 'wild' and selectively bred stocks of the Pacific oyster Crassostrea gigas from the US Pacific Northwest and reared them in ambient (~400 µatm) or high (1600 µatm) pCO2 seawater from fertilization through final metamorphosis to juvenile 'spat.' In each year, high pCO2 seawater inhibited early larval development and affected the timing, but not the magnitude, of mortality during this stage. The effects of acidified seawater on metamorphosis of pediveligers to spat were variable between years, with no effect of seawater pCO2 in the first experiment but a 42% reduction in spat in the second. Despite this variability, larvae from selectively bred oysters produced, on average, more (+ 55 and 37%) and larger (+ 5 and 23%) spat in ambient and high pCO2 seawater, respectively. These findings highlight the variable and stage-specific sensitivity of larval oysters to acidified seawater and the influence that genetic factors have in determining the larval performance of C. gigas exposed to high pCO2 seawater.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-2-24.
DOI: 10.1594/pangaea.941568
title: Seawater carbonate chemistry and plasticity of symbiont acquisition in new recruits of the massive coral Platygyra daedalea

description: Symbiosis establishment is a milestone in the life cycles of most broadcast-spawning corals; however, it remains largely unknown how initial symbiont infection is affected by ocean warming and acidification, particularly for massive corals. This study investigated the combined effects of elevated temperature (29 vs. 31 °C) and pCO2 (450 vs.  1000 μatm) on the recruits of a widespread massive coral, Platygyra daedalea. Results showed that geometric diameter and symbiosis establishment were unaffected by high pCO2, while elevated temperature significantly reduced successful symbiont infection by 50% and retarded the geometric diameter by 6%. Although neither increased temperature, pCO2, nor their interaction affected survival or algal pigmentation of recruits, there was an inverse relationship between symbiont infection rates and survivorship, especially at high temperatures, possibly as a result of oxidative stress caused by algal symbionts under increased temperature. Intriguingly, the proportion of Durusdinium did not increase in recruits at 31 °C, while recruits reared under high pCO2 hosted less Breviolum and more Durusdinium, indicating a high degree of plasticity of early symbiosis and contrasting to the previous finding that heat stress usually leads to the prevalence of thermally tolerant Durusdinium in coral recruits. These results suggest that ocean warming is likely to be more deleterious for the early success of P. daedalea than ocean acidification and provide insights into our understanding of coral-algal symbiotic partnerships under future climatic conditions.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-3-1.
DOI: 10.1594/pangaea.839887
title: Could the acid-base status of Antarctic sea urchins indicate a better-than-expected resilience to near-future ocean acidification?

description: Increasing atmospheric carbon dioxide concentration alters the chemistry of the oceans towards more acidic conditions. Polar oceans are particularly affected due to their low temperature, low carbonate content and mixing patterns, for instance upwellings. Calcifying organisms are expected to be highly impacted by the decrease in the oceans' pH and carbonate ions concentration. In particular, sea urchins, members of the phylum Echinodermata, are hypothesized to be at risk due to their high-magnesium calcite skeleton. However, tolerance to ocean acidification in metazoans is first linked to acid-base regulation capacities of the extracellular fluids. No information on this is available to date for Antarctic echinoderms and inference from temperate and tropical studies needs support. In this study, we investigated the acid-base status of 9 species of sea urchins (3 cidaroids, 2 regular euechinoids and 4 irregular echinoids). It appears that Antarctic regular euechinoids seem equipped with similar acid-base regulation systems as tropical and temperate regular euechinoids but could rely on more passive ion transfer systems, minimizing energy requirements. Cidaroids have an acid-base status similar to that of tropical cidaroids. Therefore Antarctic cidaroids will most probably not be affected by decreasing seawater pH, the pH drop linked to ocean acidification being negligible in comparison of the naturally low pH of the coelomic fluid. Irregular echinoids might not suffer from reduced seawater pH if acidosis of the coelomic fluid pH does not occur but more data on their acid-base regulation are needed. Combining these results with the resilience of Antarctic sea urchin larvae strongly suggests that these organisms might not be the expected victims of ocean acidification. However, data on the impact of other global stressors such as temperature and of the combination of the different stressors needs to be acquired to assess the sensitivity of these organisms to global change.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne et al, 2014) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2014-12-01.
description: Supplement to: Collard, Marie; De Ridder, Chantal; David, Bruno; Dehairs, Frank; Dubois, Philippe (2014): Could the acid-base status of Antarctic sea urchins indicate a better-than-expected resilience to near-future ocean acidification? Global Change Biology
DOI: 10.1594/pangaea.721770
title: Seawater carbonate chemistry during experiments with Stylophora pistillata, 2008

description: The decrease in the saturation state of seawater, following seawater acidification, is believed to be the main factor leading to a decrease in the calcification of marine organisms. To provide a physiological explanation for this phenomenon, the effect of seawater acidification was studied on the calcification and photosynthesis of the scleractinian tropical coral Stylophora pistillata. Coral nubbins were incubated for 8 days at three different pH (7.6, 8.0, and 8.2). To differentiate between the effects of the various components of the carbonate chemistry (pH, CO32, HCO3, CO2), tanks were also maintained under similar pH, but with 2-mM HCO3 added to the seawater. The addition of 2-mM bicarbonate significantly increased the photosynthesis in S. pistillata, suggesting carbon-limited conditions. Conversely, photosynthesis was insensitive to changes in pH and pCO2. Seawater acidification decreased coral calcification by ca. 0.1-mg CaCO3 g-1 d-1 for a decrease of 0.1 pH units. This correlation suggested that seawater acidification affected coral calcification by decreasing the availability of the CO32 substrate for calcification. However, the decrease in coral calcification could also be attributed either to a decrease in extra- or intracellular pH or to a change in the buffering capacity of the medium, impairing supply of CO32 from HCO3.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
description: Supplement to: Marubini, Francesca; Ferrier-Pagès, Christine; Furla, Paola; Allemand, Denis (2008): Coral calcification responds to seawater acidification: a working hypothesis towards a physiological mechanism. Coral Reefs, 27(3), 491-499
DOI: 10.1594/pangaea.914200
title: Seawater carbonate chemistry and survival, calcification rate of 4 species of coral over a 93-day ocean acidification and warming laboratory experiment

description: We conducted a 93-day experiment investigating the independent and combined effects of acidification (280−3300 µatm pCO2) and warming (28°C and 31°C) on calcification and linear extension rates of four key Caribbean coral species (Siderastrea siderea, Pseudodiploria strigosa, Porites astreoides, Undaria tenuifolia) from inshore and offshore reefs on the Belize Mesoamerican Barrier Reef System. All species exhibited nonlinear declines in calcification rate with increasing pCO2. Warming only reduced calcification in Ps. strigosa. Of the species tested, only S. siderea maintained positive calcification in the aragonite-undersaturated treatment. Temperature and pCO2 had no effect on the linear extension of S. siderea and Po. astreoides, and natal reef environment did not impact any parameter examined. Results suggest that S. siderea is the most resilient of these corals to warming and acidification owing to its ability to maintain positive calcification in all treatments, Ps. strigosa and U. tenuifolia are the least resilient, and Po. astreoides falls in the middle. These results highlight the diversity of calcification responses of Caribbean corals to projected global change.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-03-18.
DOI: 10.1594/pangaea.954754
title: Carbonate chemistry of ambient (∼380 μatm) and high (∼850 μatm) CO2 sites off a volcanic CO2 vent in Vulcano island, Italy

description: Carbonate chemistry measured at two CO2 sites characterized by different pCO2 regimes (high pCO2 and ambient pCO2) of Vulcano Island (year 2019). Multiple measurements of salinity, temperature (T °C) and pH were carried out daily in each experimental site (between 10:00-17:00 h) on the same day the behavioural trials were performed. A multi- parametric probe (YSI 556 MPS, YSI Inc. Yellow Springs, OH) was used to measure salinity and pH and temperature (°C). A fixed Total Alkalinity of 2500 μmol kg− 1 (assumed for this study), pHNBS temperature and salinity were used to calculate the pCO2 levels using the software CO2SYS (Pierrot et al., 2006) with dissociation constants for carbonate from Mehrbach et al. (1973) refitted by Dickson and Millero (1987), and for KSO4 from Dickson (1990).
description: Support was provided by the Japan Society for the Promotion of Science (日本学術振興会) as core-to-core funding (Advanced Research Network, https://www.jsps.go.jp/english/e-c2c/adopted_a.html) for 2021-2026.
DOI: 10.1594/pangaea.848035
title: Ocean acidification has multiple modes of action on bivalve larvae

description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2015-07-09.
DOI: 10.1594/pangaea.913488
title: Seawater carbonate chemistry and sea urchin reproductive performance

description: Ocean acidification (OA) is predicted to be a major driver of ocean biodiversity change. At projected rates of change, sensitive marine taxa may not have time to adapt. Their persistence may depend on pre-existing inter-individual variability. We investigated individual male reproductive performance under present-day and OA conditions using two representative broadcast spawners, the sea urchins Lytechinus pictus and Heliocidaris erythrogramma. Under the non-competitive individual ejaculate scenario, we examined sperm functional parameters (e.g. swimming speed, motility) and their relationship with fertilization success under current and near-future OA conditions. Significant inter-individual differences in almost every parameter measured were identified. Importantly, we observed strong inverse relationships between individual fertilization success rate under current conditions and change in fertilization success under OA. Individuals with a high fertilization success under current conditions had reduced fertilization under OA, while individuals with a low fertilization success under current conditions improved. Change in fertilization success ranged from −67% to +114% across individuals. Our results demonstrate that while average population fertilization rates remain similar under OA and present-day conditions, the contribution by different males to the population significantly shifts, with implications for how selection will operate in a future ocean.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-03-06.
DOI: 10.1594/pangaea.839072
title: Vertical profiles of environmental parameters measured on discrete water samples collected with Niskin bottles at station TARA_074 during the Tara Oceans expedition 2009-2013

description: The Tara Oceans Expedition (2009-2013) was a global survey of ocean ecosystems aboard the Sailing Vessel Tara. It carried out extensive measurements of evironmental conditions and collected plankton (viruses, bacteria, protists and metazoans) for later analysis using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set includes properties of seawater, particulate matter and dissolved matter that were measured from discrete water samples collected with Niskin bottles during the 2009-2013 Tara Oceans expedition. Properties include pigment concentrations from HPLC analysis (10 depths per vertical profile, 25 pigments per depth), the carbonate system (Surface and 400m; pH (total scale), CO2, pCO2, fCO2, HCO3, CO3, Total alkalinity, Total carbon, OmegaAragonite, OmegaCalcite, and dosage Flags), nutrients (10 depths per vertical profile; NO2, PO4, N02/NO3, SI, quality Flags), DOC, CDOM, and dissolved oxygen isotopes. The Service National d'Analyse des Paramètres Océaniques du CO2, at the Université Pierre et Marie Curie, determined CT and AT potentiometrically. More than 200 vertical profiles of these properties were made across the world ocean. DOC, CDOM and dissolved oxygen isotopes are available only for the Arctic Ocean and Arctic Seas (2013).
description: marc.picheral@obs-vlfr.fr&gt;2014-10-03T13:23:32&gt;D:\process_ctd_data\Tara_validated_CTD_data_20121011\Tara_Oceans_Data_RVSS-NISKIN_2009-2013_20141003&gt;
DOI: 10.1594/pangaea.923759
title: Seawater carbonate chemistry and calcification and survival of the pteropod Limacina helicina

description: The pteropod Limacina helicina frequently experiences seasonal exposure to corrosive conditions (Omega arag  &lt; 1) along the US West Coast and is recognized as one of the species most susceptible to ocean acidification (OA). Yet, little is known about their capacity to acclimatize to such conditions. We collected pteropods in the California Current Ecosystem (CCE) that differed in the severity of exposure to Omega arag conditions in the natural environment. Combining field observations, high-CO2 perturbation experiment results, and retrospective ocean transport simulations, we investigated biological responses based on histories of magnitude and duration of exposure to Omega arag  &lt; 1. Our results suggest that both exposure magnitude and duration affect pteropod responses in the natural environment. However, observed declines in calcification performance and survival probability under high CO2 experimental conditions do not show acclimatization capacity or physiological tolerance related to history of exposure to corrosive conditions. Pteropods from the coastal CCE appear to be at or near the limit of their physiological capacity, and consequently, are already at extinction risk under projected acceleration of OA over the next 30 years. Our results demonstrate that Omega arag  exposure history largely determines pteropod response to experimental conditions and is essential to the interpretation of biological observations and experimental results.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-09-27.
DOI: 10.1594/pangaea.924086
title: Seawater carbonate chemistry and biogenic dimethylated sulfur compounds cycling

description: Ocean acidification (OA) affects marine primary productivity and community structure. Therefore, OA may influence the biogeochemical cycles of volatile biogenic dimethyl sulfide (DMS), and its precursor dimethylsulfoniopropionate (DMSP) and photochemical oxidation product dimethyl sulfoxide (DMSO). A 23-day shipboard incubation experiment investigated the short-term response of the production and cycling of biogenic sulfur compounds to OA in the Changjiang River Estuary to understand the effects of OA on biogenic sulfur compounds. Phytoplankton abundance and community composition showed a marked difference at three different pH levels at the late stage of the experiment. Significant reductions in chlorophyll a (Chl-a), DMS, particulate DMSP (DMSPp) and dissolved DMSO (DMSOd) concentrations were identified under high CO2 levels. Moreover, minimal changes were observed in the productions of dissolved DMSP (DMSPd) and particulate DMSO (DMSOp) among the treatments. The ratios of DMS, total DMSP (DMSPt) and total DMSO (DMSOt) to Chl-a were not affected by a change in pH. Furthermore, the concentrations of DMS and DMSOd were closely related to the mean bacterial abundance at the three pH levels. Additional short-term (8 h) incubation experiments on the light and temperature effects showed that the influence of pH on the production of dimethylated sulfur compounds also depended on solar radiation and temperature. Under natural and UVB light, DMS photodegradation rates increased by 1.6 to 4.2 times at low pH levels. Thus, OA may lead to decreasing DMS concentrations in surface seawater. Light and temperature conditions also play important roles in the production and cycling of biogenic sulfur compounds.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-10-20.