cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5pw7b
title: MassIVE MSV000084048 - Epithelial ovarian cancer biomarker
title: Protein biomarkers of early stages of disease are critical for managing the disease and improving outcomes. Unfortunately, discovery of protein biomarkers is hampered by the limited availability of assays for sensitive and reproducible quantification of proteins in complex biological matrices such as blood plasma. In the recent years, Selected Reaction Monitoring (SRM) has emerged as a robust mass spectrometric method, capable of overcoming this limitation. Here, we present a comprehensive SRM-based strategy for developing protein biomarkers for epithelial ovarian cancer, and illustrate the extent to which SRM platform, combined with sound experimental design and statistical analysis, results in robust detection of predictive analytes. First, the biomarker development was guided by a discovery-driven proteomic effort to detect potential N-glycoprotein biomarker candidates in tissue of a genetically stable ovarian cancer mouse model. Next, 65 candidate markers were reproducibly quantified with SRM assays across a large cohort of over 200 plasma samples from ovarian cancer patients and healthy controls. Finally, these measurements were used to derive 5-protein signatures for distinguishing individuals with epithelial ovarian cancer from healthy controls. The sensitivity of the candidate biomarker signature in combination with CA125 ELISA-based measurements currently used in clinic, exceeded that of CA125 ELISA-based measurements alone. The SRM-based strategy in this study is broadly applicable. It can be used in any study that requires accurate and reproducible quantification of selected proteins in a high-throughput and multiplexed fashion.
DOI: 10.25345/c5cd36
title: MassIVE MSV000084053 - GNPS - IIN - Pseudonocardia Extracts Gouping - Illumina
title: This MassIVE contains files for testing and evaluation of ion identity networking workflow. Samples were extracted with EtOAc from monocultures of Pseudonocardia symbionts of Attine ants (Genera Tchachymyrmex). Extracts were analyzed by LC-MS/MS performed in an UFLC Shimadzu system using a column C18 Phenomenex (250 mm x 4,6mm) and Q-TOF micro mass spectrometer (Waters) equipped with ESI source
DOI: 10.25345/c57q0x
title: MassIVE MSV000084054 - GNPS Workflow Fagonia Unhyrolyzed 2july2019
title: Fagonia GNPS unhyrolyzed 2 july 2019 stevens group wenbin
DOI: 10.25345/c53w8f
title: MassIVE MSV000084055 - GNPS Workflow Clinical Trial Hops 2July19
title: Hops Clinical Trial 2 july 2019 stevens group wenbin
DOI: 10.5281/zenodo.3266456
title: DWD European Weather 2

description: opendata.dwd.de - OpenData by Deutscher Wetter Dienst

Conditions: https://www.dwd.de/EN/service/copyright/copyright_node.html

dates and times are UTC.
DOI: 10.5523/bris.21w0xiagciryg2b1gcdaxn5z2q
title: Chemical Science Xiao et al

description: This project contains the structured data from the Perriman Group in CMM for a publication in Chemical Science
DOI: 10.21227/4n7b-9k38
title: BP Data-UNSW

description: This dataset includes beat-by-beat time-domain features extracted from 350 NIBP records which can be used to develop novel methods to estimatesystolic blood pressure (SBP) and diastolic blood pressure (DBP).
DOI: 10.7910/dvn/c9vcbx/mrxuvs
title: LCMS Lipid Analysis Data.tab

description: :unav
DOI: 10.5281/zenodo.3241807
title: Urban stormwater pond water quality and vegetation cover data

description: These data include measurements of water physical and chemical parameters and littoral vegetation measurements in urban stormwater ponds located in three different urban land use types in Orlando, Florida, USA.
DOI: 10.5281/zenodo.3241808
title: Urban stormwater pond water quality and vegetation cover data

description: These data include measurements of water physical and chemical parameters and littoral vegetation measurements in urban stormwater ponds located in three different urban land use types in Orlando, Florida, USA.
DOI: 10.25345/c5065g
title: MassIVE MSV000084056 - GNPS - IIN - Pseudonocardia Extracts Gouping - Illumina
title: This MassIVE contains files for testing and evaluation of ion identity networking workflow. Samples were extracted with EtOAc from monocultures of Pseudonocardia symbionts of Attine ants (Genera Tchachymyrmex). Extracts were analyzed by LC-MS/MS performed in an UFLC Shimadzu system using a column C18 Phenomenex (250 mm x 4,6mm) and Q-TOF micro mass spectrometer (Bruker) equipped with ESI source
DOI: 10.25548/16-e1wg
title: Gross and Histologic Assessment of a New Platform for Urinary Toxicological Testing

description: Introduction: We use mice to study male urinary dysfunction, including the role of environmental contaminants. However, little baseline data of mouse lower urinary tract exists. The goal of this study is to determine the impact of sex, androgens, and prostate size on gross morphology of mouse urinary tract and internal anatomy of the urethra. Methods: Androgens and prostate size were manipulated through exogenous testosterone supplementation, high dose finasteride (5-alpha-reductase inhibitor), and, in males, surgical castration and genetic ablation of prostatic luminal cells. We serially sectioned a control male mouse urethra in the transverse plane for H&E assessment. We performed IHC on a transverse section in our region of interest in order to quantify internal and external prostate gland characteristics. We also plan to compare the internal structure of the female urethra. Experimental Design: All mice were on a C57Bl6/J background and collected at 9-weeks-of-age (n=4-11 per group). Results: Our serial H&E sections of male mouse urethra created a complete map the internal structure of the prostatic urethra from bladder neck to pelvic urethra and allowed us to identify regions for further assessment. We have completed staining of various hormone and prostate size manipulations in male mice and are beginning quantitative analysis. Conclusions: Different prostate size and androgen manipulations (castration vs finasteride vs testosterone) have different impacts on the external and internal anatomy of the lower urinary tract. Impact: We provide key information for researchers using mouse models to study urinary function and established new urology-focused endpoints for toxicological testing.
DOI: 10.25548/16-qp8m
title: Prostate epithelial-specific expression of activated PI3K drives stromal collagen production and accumulation

description: Antibody validation data for the manuscript titled: Prostate epithelial-specific expression of activated PI3K drives stromal collagen production and accumulation
DOI: 10.21227/5s8f-ha92
title: One Year Submillisecond Fast Solar Database

description: This dataset includes gathering 18-month raw PV data at time intervals of about 200 µs (5 kHz sampling). A post-processing 365-day day-by-day downsampled version, converted to 10 ms intervals (100 Hz sampling), is also included. The end results are two databases: 1. The original, raw, data, including both fast (short circuit, 200 µs) and slow (sweep, 2.5-3.9 s) information for 18 months. These show intervals of missing points, but are provided to allow potential users to reproduce any new work. 2. Data provided at consistent 10 ms (short circuit) and 2.5-3.9 s (sweep) time bases for 365 days, after being corrected and recovered. The dataset includes short-circuit current, open-circuit voltage, and MPP voltage, current, and power extracted.
DOI: 10.21227/c24v-mm10
title: One Year Submillisecond Fast Solar Database

description: This dataset includes gathering 18-month raw PV data at time intervals of about 200 µs (5 kHz sampling). A post-processing 365-day day-by-day downsampled version, converted to 10 ms intervals (100 Hz sampling), is also included. The end results are two databases: 1. The original, raw, data, including both fast (short circuit, 200 µs) and slow (sweep, 2.5-3.9 s) information for 18 months. These show intervals of missing points, but are provided to allow potential users to reproduce any new work. 2. Data provided at consistent 10 ms (short circuit) and 2.5-3.9 s (sweep) time bases for 365 days, after being corrected and recovered. The dataset includes short-circuit current, open-circuit voltage, and MPP voltage, current, and power extracted.
DOI: 10.5519/qd.4h337fm3
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2 records)
DOI: 10.5519/qd.4xnnneyp
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (41 records)
DOI: 10.21227/73yq-tp74
title: A Passive Wireless Switching Array Based on MEMS Switches

description: Passive wireless actuators have advantages similar to passive wireless sensors, which is also suitable for use in human body or sealed spaces that require wireless operation or control. This paper proposes a passive wireless switching array based on MEMS switches. By inductive coupling, AC signals are used as power as well as control signals at the same time. The switching system includes four switching branches, each of which is composed of a receiving inductor, an AC-DC convert circuit, a MEMS switch, and a load. The detail designs of the circuit part and the MEMS switch are provided, respectively. The MEMS switches are driven by electrostatic combs and are fabricated based on the SOI process. The average measured actuation voltage of the fabricated MEMS switches is 20.4 V. The error between the average measured value and the design value is within 5%. The AC control signals are set to 7.8 MHz, 6 MHz, 4 MHz and 1.8 MHz corresponding to the resonant frequencies of the four switching branches, and their peak to peak voltages are all set to 8V. Experiments verify that each AC control signal can and only can turn on its corresponding switching branch.
DOI: 10.21227/jn6d-n686
title: A Passive Wireless Switching Array Based on MEMS Switches

description: Passive wireless actuators have advantages similar to passive wireless sensors, which is also suitable for use in human body or sealed spaces that require wireless operation or control. This paper proposes a passive wireless switching array based on MEMS switches. By inductive coupling, AC signals are used as power as well as control signals at the same time. The switching system includes four switching branches, each of which is composed of a receiving inductor, an AC-DC convert circuit, a MEMS switch, and a load. The detail designs of the circuit part and the MEMS switch are provided, respectively. The MEMS switches are driven by electrostatic combs and are fabricated based on the SOI process. The average measured actuation voltage of the fabricated MEMS switches is 20.4 V. The error between the average measured value and the design value is within 5%. The AC control signals are set to 7.8 MHz, 6 MHz, 4 MHz and 1.8 MHz corresponding to the resonant frequencies of the four switching branches, and their peak to peak voltages are all set to 8V. Experiments verify that each AC control signal can and only can turn on its corresponding switching branch.
DOI: 10.15121/1530547
title: Utah FORGE: Final Topical Report 2018

description: This is the final topical report for the Phase 2B Utah FORGE project, which is located near Roosevelt Hot Springs, Utah. This PDF format report details results associated with the conceptual geologic model, deep well 58-32, rock geomechanics, reservoir temperatures, seismic surveys, seismic monitoring, certainty, and NEPA. The report also provides an overview of all of the deliverables which were used to produce the results and full appendices.
DOI: 10.7910/dvn/th5dpc/ppkugk
title: PDT neurointensivist HDN.tab

description: :unav
DOI: 10.5281/zenodo.3266825
title: Phylogenetic Inference of the Tibeto-Burman Languages

description: Cite the source dataset as Satterthwaite-Phillips, D. (2011) Phylogenetic inference of the Tibeto-Burman languages or on the usefuseful of lexicostatistics (and "megalo"-comparison) for the subgrouping of Tibeto-Burman. Stanford: Stanford University.
DOI: 10.5281/zenodo.3266826
title: Quantifying the spatial heterogeneity of forest conversion costs and how it relates to biodiversity, conservation and land use history

description: <b>Description: </b>Start and end dates of salvage logging activity at the SAFE Project experimental site<b>Project: </b>This dataset was collected as part of the following SAFE research project: <b>Quantifying the spatial heterogeneity of forest conversion costs and how it relates to biodiversity, conservation and land use history</b><b>Funding: </b>These data were collected as part of research funded by: Sime Darby (grant)This dataset is released under the CC-BY 4.0 licence, requiring that you cite the dataset in any outputs, but has the additional condition that you acknowledge the contribution of these funders in any outputs.<b>Permits: </b>These data were collected under permit from the following authorities:Sabah Biodiversity Council  (Research licence na)<b>XML metadata: </b>GEMINI compliant metadata for this dataset is available here<b>Files: </b>This dataset consists of 2 files: template_Symes.xlsx, SAFE_COUPE.zip<b>template_Symes.xlsx</b>This file contains dataset metadata and 1 data tables:<b>Salvage logging records</b> (described in worksheet Data)Description: Dates of earliest and latest known salvage logging activity in logging coupesNumber of fields: 10Number of data rows: 187Fields: <b>CoupeNumber</b>: Coupe number (Field type: Location)<b>StartDateTrack</b>: Earliest date of logging activity recorded through GPS loggers on bulldozers (Field type: Date)<b>EndDateTrack</b>: Last date of logging activity recorded through GPS loggers on bulldozers (Field type: Date)<b>StartDateLocation</b>: Earliest date of logging activity recorded through 'Location' method (Field type: Date)<b>EndDateLocation</b>: Last date of logging activity recorded through 'Location' method (Field type: Date)<b>StartDateMeasurement</b>: Earliest date of logging activity recorded through 'Measurement' method (Field type: Date)<b>EndDateMeasurement</b>: Last date of logging activity recorded through 'Measurement' method (Field type: Date)<b>Contractor</b>: Name of the contractor responsible for the coupe (Field type: ID)<b>GlobalStart</b>: Earliest date of any recorded salvage logging activity (Field type: Date)<b>GlobalEnd</b>: Last date of any recorded salvage logging activity (Field type: Date)<b>SAFE_COUPE.zip</b>Description: SAFE coupe data<b>Date range: </b>2013-01-02 to 2015-12-31<b>Latitudinal extent: </b>4.5000 to 5.0700<b>Longitudinal extent: </b>116.7500 to 117.8200
DOI: 10.5281/zenodo.3266827
title: Quantifying the spatial heterogeneity of forest conversion costs and how it relates to biodiversity, conservation and land use history

description: <b>Description: </b>Start and end dates of salvage logging activity at the SAFE Project experimental site<b>Project: </b>This dataset was collected as part of the following SAFE research project: <b>Quantifying the spatial heterogeneity of forest conversion costs and how it relates to biodiversity, conservation and land use history</b><b>Funding: </b>These data were collected as part of research funded by: Sime Darby (grant)This dataset is released under the CC-BY 4.0 licence, requiring that you cite the dataset in any outputs, but has the additional condition that you acknowledge the contribution of these funders in any outputs.<b>Permits: </b>These data were collected under permit from the following authorities:Sabah Biodiversity Council  (Research licence na)<b>XML metadata: </b>GEMINI compliant metadata for this dataset is available here<b>Files: </b>This dataset consists of 2 files: template_Symes.xlsx, SAFE_COUPE.zip<b>template_Symes.xlsx</b>This file contains dataset metadata and 1 data tables:<b>Salvage logging records</b> (described in worksheet Data)Description: Dates of earliest and latest known salvage logging activity in logging coupesNumber of fields: 10Number of data rows: 187Fields: <b>CoupeNumber</b>: Coupe number (Field type: Location)<b>StartDateTrack</b>: Earliest date of logging activity recorded through GPS loggers on bulldozers (Field type: Date)<b>EndDateTrack</b>: Last date of logging activity recorded through GPS loggers on bulldozers (Field type: Date)<b>StartDateLocation</b>: Earliest date of logging activity recorded through 'Location' method (Field type: Date)<b>EndDateLocation</b>: Last date of logging activity recorded through 'Location' method (Field type: Date)<b>StartDateMeasurement</b>: Earliest date of logging activity recorded through 'Measurement' method (Field type: Date)<b>EndDateMeasurement</b>: Last date of logging activity recorded through 'Measurement' method (Field type: Date)<b>Contractor</b>: Name of the contractor responsible for the coupe (Field type: ID)<b>GlobalStart</b>: Earliest date of any recorded salvage logging activity (Field type: Date)<b>GlobalEnd</b>: Last date of any recorded salvage logging activity (Field type: Date)<b>SAFE_COUPE.zip</b>Description: SAFE coupe data<b>Date range: </b>2013-01-02 to 2015-12-31<b>Latitudinal extent: </b>4.5000 to 5.0700<b>Longitudinal extent: </b>116.7500 to 117.8200
DOI: 10.5525/gla.researchdata.666
title: New BODIPY derivatives with near infra-red absorption as small molecule donors for bulk heterojunction solar cells
DOI: 10.5281/zenodo.3266152
title: Meta-analysis summary-level results of histology GWAS -- males, visceral

description: MarkerName -- name of the SNP
	Allele1 -- first allele
	Allele2 -- second allele
	Freq1 -- frequency of Allele1
	FreqSE -- standard error of the freq estimate
	MinFreq -- lower confidence bound of the freq estimate
	MaxFreq -- upper confidence bound of the freq estimate
	Weight -- sample size weight
	Zscore -- z-score of the SNP
	P-value -- p-value of the SNP
	Direction -- directions of the betas in the cohorts, in the order the cohorts are listed in the corresponding *.metalParams.txt file
	HetISq -- I-squared estimate for heterogeneity test
	HetChiSq -- Chi-Square estimate for heterogeneity test
	HetDf -- degrees of freedom for heterogeneity test
	HetPVal -- p-value for heterogeneity test
DOI: 10.21421/d2/fatvht
title: Productivity and water use efficiency of Sorghum [Sorghum bicolor (L.) Moench] grown under different nitrogen applications in Sudan Savanna Zone, Nigeria

description: Nitrogen (N) is an essential nutrient for sorghum growth and development but often becomes limiting due to low availability and loss. The effects of N fertilization on water use efficiency (WUE) and physiological and yield traits of sorghum were investigated in two locations over two cropping seasons (2014 and 2015) in the Sudan Savanna zone of Nigeria. Three sorghum varieties were evaluated under six (6) N-levels (0, 20, 40, 60, 80, and 100 kg ha−1) at a constant phosphorus and potassium level of 30 kg ha−1. Results showed that N increased grain yield by 35–64% at the Bayero University Kano (BUK) and 23–78% at Minjibir. The highest mean grain yield in the N-fertilizer treatments (2709 kg ha−1 and 1852 kg ha−1 at BUK and Minjibir, resp.) was recorded at 80 kg N ha−1. ICSV400 produced the highest mean grain yields (2677 kg ha−1 and 1848 kg ha−1 at BUK and Minjibir, resp.). Significant differences were observed among the N-levels as well as among the sorghum varieties for estimated water use efficiency (WUE).To review the nutrient needs, especially N of some of selected sorghum varieties and their water use efficiency on marginal land    Experimental location on Google Map
DOI: 10.5281/zenodo.3266151
title: Meta-analysis summary-level results of histology GWAS -- males, visceral

description: MarkerName -- name of the SNP
	Allele1 -- first allele
	Allele2 -- second allele
	Freq1 -- frequency of Allele1
	FreqSE -- standard error of the freq estimate
	MinFreq -- lower confidence bound of the freq estimate
	MaxFreq -- upper confidence bound of the freq estimate
	Weight -- sample size weight
	Zscore -- z-score of the SNP
	P-value -- p-value of the SNP
	Direction -- directions of the betas in the cohorts, in the order the cohorts are listed in the corresponding *.metalParams.txt file
	HetISq -- I-squared estimate for heterogeneity test
	HetChiSq -- Chi-Square estimate for heterogeneity test
	HetDf -- degrees of freedom for heterogeneity test
	HetPVal -- p-value for heterogeneity test
DOI: 10.5281/zenodo.3266934
title: Human Kalirin/RAC1 GEF/GTPase Complex

description: We have cloned, expressed, purified and crystallised the first DH GEF domain of Kalirin (gene: KALRN) in complex with RAC1 (gene: RAC1) as part of a programme to explore a new way of targeting GTPases.  Fragment screening and X-ray crystallography has identified binders within the orthosteric binding site. A nucleotide exchange assay has been developed and GEF activity established.
description: Future versions of this document will contain experimental data about the KALRN/RAC1 TEP.
DOI: 10.5281/zenodo.3252379
title: Data of Listening Experiments for Azimuthal Localisation in (Local) Sound Field Synthesis

description: Data of two listening experiments conducted at University of Rostock, Germany. The study investigated the four (Local) Sound Field Synthesis techniques


	Wave Field Synthesis
	Near-Field-Compensated Higher-Order Ambisonics
	Local Wave Field Synthesis using Spatial Bandwidth Limitation
	Local Wave Field Synthesis using Virtual Secondary Sources


The corresponding binaural room scanning (BRS) files for the binaural simulation can be found in the directory `brs`. The employed noise stimulus is contained in `stimuli`. The localisation results are stored in `results`.  The `analysis` directory includes scripts for parsing the data.
DOI: 10.5281/zenodo.3252380
title: Data of Listening Experiments for Azimuthal Localisation in (Local) Sound Field Synthesis

description: Data of two listening experiments conducted at University of Rostock, Germany. The study investigated the four (Local) Sound Field Synthesis techniques


	Wave Field Synthesis
	Near-Field-Compensated Higher-Order Ambisonics
	Local Wave Field Synthesis using Spatial Bandwidth Limitation
	Local Wave Field Synthesis using Virtual Secondary Sources


The corresponding binaural room scanning (BRS) files for the binaural simulation can be found in the directory `brs`. The employed noise stimulus is contained in `stimuli`. The localisation results are stored in `results`.  The `analysis` directory includes scripts for parsing the data.
DOI: 10.5281/zenodo.3267223
title: NEDD4L Purification

description: As a result of a BioID experiment done to identify possible interaction partners of Huntingtin, NEDD4L was flagged. This purification aims to provide a NEDD4L sample for future experiments to confirm the possible interaction between these proteins.
description: The SGC is a registered charity (number 1097737) that receives funds from AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada through Ontario Genomics Institute [OGI-055], Innovative Medicines Initiative (EU/EFPIA) [ULTRA-DD grant no. 115766], Janssen, Merck KGaA, Darmstadt, Germany, MSD, Novartis Pharma AG, Ontario Ministry of Research, Innovation and Science (MRIS), Pfizer, São Paulo Research Foundation-FAPESP, Takeda, and Wellcome.
DOI: 10.5281/zenodo.3267224
title: NEDD4L Purification

description: As a result of a BioID experiment done to identify possible interaction partners of Huntingtin, NEDD4L was flagged. This purification aims to provide a NEDD4L sample for future experiments to confirm the possible interaction between these proteins.
description: The SGC is a registered charity (number 1097737) that receives funds from AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada through Ontario Genomics Institute [OGI-055], Innovative Medicines Initiative (EU/EFPIA) [ULTRA-DD grant no. 115766], Janssen, Merck KGaA, Darmstadt, Germany, MSD, Novartis Pharma AG, Ontario Ministry of Research, Innovation and Science (MRIS), Pfizer, São Paulo Research Foundation-FAPESP, Takeda, and Wellcome.