cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fsw2ah
title: Occurrence Download

description: A dataset containing 3861097 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-30 18,62 18,62 82,-30 82,-30 18))",
 "TaxonKey is Pica pica (Linnaeus, 1758)"
 ]
}

 The dataset includes 3861097 records from 1609 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0179766-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28801274
title: Data of "Local and landscape features of urban fragments determine the occurrence of stingless bees"

description: These are the original data files used in the study: "Local and landscape features of urban fragments determine the occurrence of stingless bees"
DOI: 10.57934/0b01e41080353cd1
title: Productiestatistiek Energie
DOI: 10.15468/dl.j6496g
title: Occurrence Download

description: A dataset containing 6176 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Desmognathus conanti Rossman, 1958)"
 ]
}

 The dataset includes 6176 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001453-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7g8rwx
title: Occurrence Download

description: A dataset containing 178 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Indirana beddomii (Günther, 1876)"
 ]
}

 The dataset includes 178 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040569-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13785008
title: Dataset of the research article "Choline Oxidase and Choline Ionic Liquids in Biocatalytic Heme Peroxidase Cascades"

description: The dataset contains primary data related to the article entitled "Choline Oxidase and Choline Ionic Liquids in Biocatalytic Heme Peroxidase Cascades", published in ChemCatChem. The dataset contains spreadsheet data detailing kinetic measurements and calculations.
DOI: 10.5281/zenodo.13785009
title: Dataset of the research article "Choline Oxidase and Choline Ionic Liquids in Biocatalytic Heme Peroxidase Cascades"

description: The dataset contains primary data related to the article entitled "Choline Oxidase and Choline Ionic Liquids in Biocatalytic Heme Peroxidase Cascades", published in ChemCatChem. The dataset contains spreadsheet data detailing kinetic measurements and calculations.
DOI: 10.15468/dl.j64pgp
title: Occurrence Download

description: A dataset containing 261383 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-3.316079 55.89405, -3.012134 55.89405, -3.012134 55.9945, -3.316079 55.9945, -3.316079 55.89405))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 261383 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040566-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ksjnsm
title: Occurrence Download

description: A dataset containing 6137 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Syncerus caffer caffer"
 ]
}

 The dataset includes 6137 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040571-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cwdxce
title: Occurrence Download

description: A dataset containing 476 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Stipa purpurea Griseb.",
 "Year 1970-2024"
 ]
}

 The dataset includes 476 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040572-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.skbreu
title: Occurrence Download

description: A dataset containing 36315 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Algeria",
 "DatasetKey is one of (The vascular plants collection (P) at the Herbarium of the Muséum national d'Histoire Naturelle (MNHN - Paris), Meise Botanic Garden Herbarium (BR), Naturalis Biodiversity Center (NL) - Botany)"
 ]
}

 The dataset includes 36315 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040570-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k33zsb
title: Occurrence Download

description: A dataset containing 235 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Staurois tuberilinguis Boulenger, 1918"
 ]
}

 The dataset includes 235 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040573-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/aj33-hw25
title: Parkes observations for project P1327 semester 2024APRS_11

description: The radio radiation neutron star include objects with spin periods ranging from a few milliseconds to tens of seconds. In the past years, however, the discovery of ultra-long period radio transient sources has posed a new challenge to the classical theoretical framework of the neutron star magnetospheric dipole model. This proposal aims to study the unique characteristics of the radio emitting neutron star, PSR J0901-4046, and the similarity of its spectro-polarimetric features with fast radio bursts (FRBs). By observing its single-pulse structures and polarization profiles, we hope to understand the origin of radio emission from magnetars and establish the potential association between Galactic neutron stars and FRBs. Using the Parkes/Murriyang 64-m radio telescope equipped with the Ultra-Wideband Low-Frequency receiver (UWL), we propose to conduct a total of 24-hour observations to search for single pulses. The expected outcomes include detecting rich single pulses with unique characteristics and providing insights into neutron star populations and their connection to FRBs.
DOI: 10.25919/gtya-1c79
title: Parkes observations for project P1325 semester 2024APRS_05

description: We request observation time with the Parkes telescope to investigate the characteristics of three "spider" millisecond pulsars (MSPs): PSR J1242-4712, PSR J2101-4802, and PSR J2129-0429. Distinguished by their remarkably compact binary orbits, these spider MSPs have an orbital period of less than a day and harbor low-mass companions (below 0.9 solar mass), all belonging to the redback spider systems. The majority of spider MSPs exhibit frequency-dependent eclipses with linear depolarization observed near their eclipse boundaries. Using the wide bandwidth of the Parkes UWL telescope (700-4000 MHz), we aim to investigate variations in the duration of eclipses within these systems across different frequencies, while also examining the fundamental eclipse mechanism. Notably, the eclipse properties of spider MSPs remain uncharted within the frequency range accessible by the Parkes UWL receiver. Our proposal aims to investigate three spider MSPs, using the wide bandwidth of Parkes UWL, specifically by modeling eclipse phase spectra in the optically thick-to-thin transitioning regime (optical depth nearly 1). Additionally, a polarization study using the UWL receiver in full polar mode will help constrain magnetic field strength variation within the eclipse region. This includes probing changes in Dispersion Measure (DM) and Rotation Measure (RM) across the pulsar's orbit, offering crucial insights into the system's specific eclipse mechanism. Therefore, we request a total of 40 hours of observing time including setup, and calibration for the investigation of the eclipse mechanisms, polarization, profile evolution, and spectra in these spider MSPs.
DOI: 10.25919/t4wx-qz30
title: Parkes observations for project P1327 semester 2024APRS_10

description: The radio radiation neutron star include objects with spin periods ranging from a few milliseconds to tens of seconds. In the past years, however, the discovery of ultra-long period radio transient sources has posed a new challenge to the classical theoretical framework of the neutron star magnetospheric dipole model. This proposal aims to study the unique characteristics of the radio emitting neutron star, PSR J0901-4046, and the similarity of its spectro-polarimetric features with fast radio bursts (FRBs). By observing its single-pulse structures and polarization profiles, we hope to understand the origin of radio emission from magnetars and establish the potential association between Galactic neutron stars and FRBs. Using the Parkes/Murriyang 64-m radio telescope equipped with the Ultra-Wideband Low-Frequency receiver (UWL), we propose to conduct a total of 24-hour observations to search for single pulses. The expected outcomes include detecting rich single pulses with unique characteristics and providing insights into neutron star populations and their connection to FRBs.
DOI: 10.26180/27157746
title: International effort to advance systems change to address the needs of families where a parent has a mental illness: a Delphi Study. Round 1 Deidentified data set

description: This is the round 1 data set from an international comparative study of implementation support mechanisms for system change in family mental health. This study uses a Delphi method, with 91 participants from17 countries to identify systems change factors and to build consensus about key strategies required across internationally to support systems change in health, education, social welfare and mental health services.<br>
DOI: 10.26180/27157746.v1
title: International effort to advance systems change to address the needs of families where a parent has a mental illness: a Delphi Study. Round 1 Deidentified data set

description: This is the round 1 data set from an international comparative study of implementation support mechanisms for system change in family mental health. This study uses a Delphi method, with 91 participants from17 countries to identify systems change factors and to build consensus about key strategies required across internationally to support systems change in health, education, social welfare and mental health services.<br>
DOI: 10.5281/zenodo.10637727
title: The BenchStab dataset: a dataset for comparing mutational predictors of stability

description: This dataset is a part of BenchStab, a command-line tool for querying and benchmarking web-based protein stability predictors. We created the dataset to independently evaluate 18 structure-enabled and 4 sequence-based predictors of a stability change upon mutation. We suggest that this dataset should be excluded from training and validation of future stability predictors.

The dataset consists of single-point mutations and their experimentally determined ΔΔG from FireProtDB, utilizing only records with both a ΔΔG measurement and a PDB accession code available. We eliminated all records similar to the data used in the training set of any of the predictors considered in BenchStab using UniRef50 clusters. This resulted in 289 records for 36 proteins, of which 28 % display a stabilizing effect (negative value of ΔΔG; see DDG distribution.png for the exact distribution). We further confirmed, by employing SCOP fold-based structure clustering, that the folds of 25 of our proteins were not present in the training sets. 

The file dataset.csv contains specifications of mutations (including the chain) and the ground truth ΔΔG reported from the literature alongside accession codes from FireProtDB (experiment ID), UniProt and Protein Data Bank, and UniRef50 cluster IDs. The file benchstab_input.csv contains the same data in the input format of the BenchStab tool.

For more statistics and details about the dataset, please read the supplement of the paper or get in touch with us.
DOI: 10.5281/zenodo.10637728
title: The BenchStab dataset: a dataset for comparing mutational predictors of stability

description: This dataset is a part of BenchStab, a command-line tool for querying and benchmarking web-based protein stability predictors. We created the dataset to independently evaluate 18 structure-enabled and 4 sequence-based predictors of a stability change upon mutation. We suggest that this dataset should be excluded from training and validation of future stability predictors.

The dataset consists of single-point mutations and their experimentally determined ΔΔG from FireProtDB, utilizing only records with both a ΔΔG measurement and a PDB accession code available. We eliminated all records similar to the data used in the training set of any of the predictors considered in BenchStab using UniRef50 clusters. This resulted in 289 records for 36 proteins, of which 28 % display a stabilizing effect (negative value of ΔΔG; see DDG distribution.png for the exact distribution). We further confirmed, by employing SCOP fold-based structure clustering, that the folds of 25 of our proteins were not present in the training sets. 

The file dataset.csv contains specifications of mutations (including the chain) and the ground truth ΔΔG reported from the literature alongside accession codes from FireProtDB (experiment ID), UniProt and Protein Data Bank, and UniRef50 cluster IDs. The file benchstab_input.csv contains the same data in the input format of the BenchStab tool.

For more statistics and details about the dataset, please read the supplement of the paper or get in touch with us.
DOI: 10.15468/dl.p2xcxu
title: Occurrence Download

description: A dataset containing 233 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Staurois parvus Inger & Haile, 1959"
 ]
}

 The dataset includes 233 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040575-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/39dx-1s55
title: Parkes observations for project P1322 semester 2024APRS_08

description: Pulsars are critical for probing fundamental questions in various domains of physics and astrophysics. Traditional pulsar search methods, focusing on periodicity analysis of time series data, have cataloged over 3,400 pulsars. However, these methods face challenges in detecting millisecond pulsars (MSPs) and binary pulsars due to dispersion measure smearing and the modulation in spin period due to Doppler smearing effect. An alternative way to overcome these challenges has been the use of all-sky imaging surveys at radio wavelengths, enabling the discovery of pulsars through imaging rather than traditional searches. This approach, which detects phase-averaged emission from pulsars, overcomes the limitations of traditional methods. Imaging surveys, such as those conducted by the Australian Square Kilometre Array Pathfinder (ASKAP), are particularly effective in identifying pulsars without prior knowledge of their pulse width, dispersion measure, or binarity. The Rapid ASKAP Continuum Survey (RACS) has identified 25 steep spectrum sources with a spectral index consistent with pulsars. To confirm the pulsar nature of these sources, in this proposal, we will use the Ultra-Wide-low (UWL) receiver of the Parkes radio telescope. Due to a large bandwidth coverage, the UWL receiver of Parkes is an ideal instrument to achieve this goal.
DOI: 10.6084/m9.figshare.27169095
title: Microscopic analysis of low but stable perovskite solar cell device performance using electron spin resonance

description: The text data for the paper "Microscopic analysis of low but stable perovskite solar cell device performance using electron spin resonance",
DOI: 10.6084/m9.figshare.27169095.v1
title: Microscopic analysis of low but stable perovskite solar cell device performance using electron spin resonance

description: The text data for the paper "Microscopic analysis of low but stable perovskite solar cell device performance using electron spin resonance",
DOI: 10.22002/d1.1876
title: Genomic references

description: Genomic references (genome.fa, genes.gtf, transcriptome.fa, t2g.txt) for 

arabidopsis-tair10
fly-dm6
human-grch38
human_mouse-hg19_mm10
mouse-mm10
rat-rnor6
worm-ws260
zebrafish-dr82

Also included are the 10xv2 and 10xv3 barcode whitelists and GO/ENSEMBL ID's and gene descriptions for the corresponding organism.
DOI: 10.26133/nea1
title: Confirmed Planets Table

description: The Confirmed Planets table contains physical and orbital parameters for the planet and the host star, as available from the default literature reference for each planet. This table has been retired as of 2021 and it has been replaced by the Planetary Systems table (10.26133/NEA12).

This dataset or service is made available by the NASA Exoplanet Science Institute at IPAC, which is operated by the California Institute of Technology under contract with the National Aeronautics and Space Administration.
DOI: 10.48577/jpl.2ktvw5
title: Dataset for “Identifying and Characterizing Motile and Fluorescent Microorganisms in Microscopy Data Using Onboard Science Autonomy”

description: The Ocean Worlds Life Surveyor is a life-detection instrument suite for ocean worlds. This dataset contains recordings from two instruments from the Extant Life Volume Imaging System (ELVIS): the Digital Holographic Microscope (DHM) and the Volumetric Fluorescent Imager (VFI, also referred to as FLFM). These datasets were used to train and optimize the Onboard Science Instrument Autonomy (OSIA) software, the Holographic Examination of Life-like Motility (HELM) for the DHM and the FLFM Autonomous Motility Evaluation (FAME) for the VFI. This dataset is being published to support a paper in preparation: "Identifying and Characterizing Motile and Fluorescent Microorganisms in Microscopy Data Using Onboard Science Autonomy"
DOI: 10.5281/zenodo.10871038
title: The Seasonal Variability in the Semidiurnal Internal Tide; A Comparison between Sea Surface Height and Energetics

description: This dataset contains data from global HYCOM simulations with realistic atmospheric and tidal forcings. The horizontal resolution is 8 km. Data is stored as netcdf4 classic.
DOI: 10.6084/m9.figshare.25092971
title: Supplementary Material for: Prognostic value of pathological response for patients with unresectable hepatocellular carcinoma undergoing conversion surgery

description: Introduction: Transarterial chemoembolization combined with lenvatinib and PD-1 inhibitor (triple therapy) has displayed encouraging clinical outcomes for unresectable hepatocellular carcinoma (uHCC). We aim to explore the prognostic value of pathologic response (PR) in patients with initially uHCC who underwent conversion surgery following triple therapy, and identify predictors of major pathologic response (MPR).
Methods: A total of 76 patients with initially uHCC who underwent conversion surgery following triple therapy were retrospectively analyzed. PR was calculated as the proportion of non-viable tumor cell surface area of the whole tumor bed surface area. MPR was identified when PR was ≥ 90%. Pathological complete response (pCR) was defined as the absence of viable tumor cells.
Results: MPR and pCR were identified in 53 (69.7%) and 25 (32.9%) patients, respectively. The 1- and 2-year overall survival in patients with MPR was significantly higher than in those without MPR (100.0% and 91.3% vs. 67.7 % and 19.4%; p &lt;0.001). The corresponding recurrence-free survival was also improved in patients with MPR compared to those without (75.9% and 50.8% vs. 22.3 and 11.2%; p &lt; 0.001). Similar results were observed among patients with pCR and those without. Patients who achieved MPR without pCR exhibited survival rates comparable to those of patients who achieved pCR. Baseline neutrophil-to-lymphocyte ratio ≥ 2.6 (p = 0.016) and preoperative alpha-fetoprotein ≥ 400 ng/mL (p = 0.015) were independent predictors of MPR.
Conclusion: The presence of MPR or pCR could improve prognosis in patients with initially uHCC who underwent conversion surgery following triple therapy. The PR may become a surrogate marker for predicting the prognosis of these patients.
DOI: 10.5281/zenodo.8154833
title: Supplementary material of the study "Help! I need somebody. A Mapping Study about Expert Identification in Software Development"

description: <strong>Supplementary Material</strong> <em><strong>Context</strong></em>: Software development is a knowledge-intensive activity, and its success in an organization relies deeply on knowledge sharing. Knowledge management challenges are often increased in agile environments, which involve a lot of tacit knowledge, commonly acquired through experiences and hard to be made explicit. Therefore, knowledge sharing among practitioners is crucial. However, identifying suitable experts to share specific knowledge is not trivial. It involves not only discovering the individuals with the desired knowledge but also considering other factors that may improve the expert responsiveness, such as social connections and availability. <em><strong>Objective</strong></em>: Considering the important role experts play in knowledge sharing, we decided to investigate approaches that help identify experts that can share knowledge in software development. Our goal is to provide a panorama of the existing approaches and shine a light on research opportunities. <em><strong>Method</strong></em>: We carried out a systematic literature mapping and analyzed 17 publications. <em><strong>Results</strong></em>: The results show that most approaches have relied on code repositories as a source of evidence for identifying experts and, consequently, focus on supporting developers and aiding in the codification activity. Additionally, expert identification has been mostly automated, and factors beyond possessing the desired knowledge have often been disregarded. <em><strong>Conclusion</strong></em>: Although there are several expert identification approaches, there has been a lack of concern with factors that influence reaching the most suitable expert for a specific situation (e.g., considering the characteristics of the person seeking knowledge). Moreover, there is a need for deeper reflection on how to better explore different artifacts as sources of expert evidence and how to combine them to improve expert identification. This package contains supplementary material of the study performed to investigate approaches that help identify experts that can share knowledge in software development. It contains: A spreadsheet containing raw data (research protocol, considered and selected publications, and research questions answers).
description: This research is funded in part by the Espírito Santo Research and Innovation Support Foundation (FAPES).
DOI: 10.5066/p975ph68
title: Supporting files for particle tracking simulations of the Upper Missouri River near Wolf Point, MT

description: This dataset contains supporting files for particle tracking simulations of the Upper Missouri River near Wolf Point, MT.