cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25387/g3.25968319
title: Supplemental Material for Heinz et al., 2024

description: Stony coral tissue loss disease (SCTLD) has devastated coral reefs off the coast of Florida and continues to spread throughout the Caribbean. Although a number of bacterial taxa have consistently been associated with SCTLD, no pathogen has been definitively implicated in the etiology of SCTLD. Previous studies have predominantly focused on the prokaryotic community through 16S rRNA sequencing of healthy and affected tissues. Here, we provide a different analytical approach by applying a bioinformatics pipeline to publicly available metagenomic sequencing samples of SCTLD lesions and healthy tissues from four stony coral species. To compensate for the lack of coral reference genomes, we used data from apparently healthy coral samples to approximate a host genome and healthy microbiome reference. These reads were then used as a reference to which we matched and removed reads from diseased lesion tissue samples, and the remaining reads associated only with disease lesions were taxonomically classified at the DNA and protein levels. For DNA classifications, we used a pathogen identification protocol originally designed to identify pathogens in human tissue samples, and for protein classifications, we used a fast protein sequence aligner. To assess the utility of our pipeline, a species-level analysis of a candidate genus, <i>Vibrio</i>, was used to demonstrate the pipeline's effectiveness. Our approach revealed both complementary and unique coral microbiome members compared to a prior metagenome analysis of the same dataset.
DOI: 10.25387/g3.25968319.v1
title: Supplemental Material for Heinz et al., 2024

description: Stony coral tissue loss disease (SCTLD) has devastated coral reefs off the coast of Florida and continues to spread throughout the Caribbean. Although a number of bacterial taxa have consistently been associated with SCTLD, no pathogen has been definitively implicated in the etiology of SCTLD. Previous studies have predominantly focused on the prokaryotic community through 16S rRNA sequencing of healthy and affected tissues. Here, we provide a different analytical approach by applying a bioinformatics pipeline to publicly available metagenomic sequencing samples of SCTLD lesions and healthy tissues from four stony coral species. To compensate for the lack of coral reference genomes, we used data from apparently healthy coral samples to approximate a host genome and healthy microbiome reference. These reads were then used as a reference to which we matched and removed reads from diseased lesion tissue samples, and the remaining reads associated only with disease lesions were taxonomically classified at the DNA and protein levels. For DNA classifications, we used a pathogen identification protocol originally designed to identify pathogens in human tissue samples, and for protein classifications, we used a fast protein sequence aligner. To assess the utility of our pipeline, a species-level analysis of a candidate genus, <i>Vibrio</i>, was used to demonstrate the pipeline's effectiveness. Our approach revealed both complementary and unique coral microbiome members compared to a prior metagenome analysis of the same dataset.
DOI: 10.15468/dl.ugr4wr
title: Occurrence Download

description: A dataset containing 467788707 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-180 -82,-180 82,180 82,180 -82,-180 -82))"
 ]
}

 The dataset includes 467788707 records from 11412 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000250-150204170955391/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kf6wta
title: Occurrence Download

description: A dataset containing 2727 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (IRL, GBR.2_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Usnea fragilescens, Stigmidium microspilum, Sticta sylvatica, Sticta limbata, Sticta fuliginosa, Sticta canariensis, Pyrenula occidentalis, Pyrenula macrospora, Pyrenula laevigata, Pseudocyphellaria citrina, Peltigera horizontalis, Pectenia atlantica, Parmeliella thriptophylla, Parmeliella parvula, Pannaria rubiginosa, Pannaria conoplea, Pectenia plumbea, Opegrapha thelotrematis, Nephroma parile, Nephroma laevigatum, Micarea alabastrites, Megalaria grossa, Lobaria virens, Lobaria pulmonaria, Lobaria amplissima, Leptogium cyanescens, Hypotrachyna sinuosa, Hypotrachyna laevigata, Gyalideopsis muscicola, Gomphillus calycioides, Collema subflaccidum, Bunodophoron melanocarpum, Bryoria fuscescens, Arthopyrenia nitescens, Arthopyrenia carneobrunneola, Arthonia vinosa, Arthonia ilicina)"
 ]
}

 The dataset includes 2727 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020001-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vbscps
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senna siamea",
 "Country is Solomon Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020002-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16734510
title: Images and data of fine particle migration and clogging
DOI: 10.5281/zenodo.16734511
title: Images and data of fine particle migration and clogging
DOI: 10.15468/dl.cukatg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Pternistis ochropectus)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020006-250802193616735/datasets/export for details.
DOI: 10.14466/cefasdatahub.135
title: Goose barnacle growth rates measured from specimens collected in Celtic Sea in April 2018

description: This data resulted from an opportunistic interception of biofouled marine litter floating off the coast of Cornwall. A colony of goose barnacles (Lepas anatifera) and a neustonic isopod Idotea metallica were found attached to the drifting litter.  Both these species are not native to the UK. The interception was used as a case study to model the path of the drifting litter to a probable origin in the Western Atlantic, using the biological traits of the attached animals. This data contains photographic images, location map, and text describing the specimens collected from the litter, along with photos of the litter object. The floating litter was intercepted at 50.145 N 6.019 W between Cornwall and the Isles of Scilly on the 11/04/18 by the RV Cefas Endeavour. Forty-five individuals of goose barnacles were retained along with one specimen of the Isopod. Descriptions of each species are given. Measurements of the length of three goose barnacle plates (Capitellum, Scutum, and Carina) are included. By comparing total plate length against different growth rates, we could derive probable growth durations for each of the goose barnacle specimens and this was used to paramaterize our model. The litter object was collected opportunistically onboard the Cefas Endeavour, off the coast of Cornwall (50.145 N, 6.019 W). Photographs were taken on the deck after collection, and later on the quayside in Lowestoft. Goose barnacles (Lepas anatifera) and the single individual of Idotea metallica was photographed in the benthic laboratory in Cefas. A subset of 45 individuals of goose barnacle were measured along the long axis of each of three plates: Capitellum, Scutum, and Carina. These measurements were then divided by daily growth rates (taken from literature of oceanic daily growth rates for the species) for both Capitellum and Scutum to produce a likely growth period duration needed to reach that size. This estimate for how long it took both the Capitellum and Scutum to attain their size at the time of interception was used to inform how long to run our drifting litter model. For a full explanation see: https://www.sciencedirect.com/science/article/pii/S0025326X22010700
DOI: 10.15468/dl.b9he9w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Pternistis ochropectus)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020007-250802193616735/datasets/export for details.
DOI: 10.15468/dl.t5hata
title: Occurrence Download

description: A dataset containing 20396 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Philesturnus carunculatus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 20396 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020004-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22000/v6xz4wsadaj3tjk4
title: Alkali Metal Complexes of a Phosphine−Functionalized Cyclooctatetraene
DOI: 10.15468/dl.8pqxsr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Pternistis ochropectus)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020005-250802193616735/datasets/export for details.
DOI: 10.15468/dl.srk82z
title: Occurrence Download

description: A dataset containing 653 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Odorrana schmackeri",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 653 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020008-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wdhccn
title: Occurrence Download

description: A dataset containing 272 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Nematalosa come)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 272 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020011-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14466/cefasdatahub.136
title: Modelled projections of coral species presences/absences at reef locations worldwide, under warming and acidification

description: Global projection of coral species with suitable/non-suitable habitat at coral reef locations around the world until the end of the century, derived from environmental niche modelling. The projections are decadal, for the "training" period (circa 1990s) and for every decade from 2020s to 2080s, under two different emission scenarios: the Shared Socio-economic Pathways "SSP1-2.6" and "SSP5-8.5" (see Meinshausen et al., 2020 for details). The data is provided as two separate csv files (which have been added to a .zip file due to the large file sizes), each corresponding to one emission scenario. 
The data is based on the output of individual Maximum Entropy models (MaxEnt; Phillips, Anderson, & Schapire, 2006) for 684 Scleractinian coral species. Each model was trained to capture the environmental requirements of individual coral species, with variables such as Sea Surface Temperature (SST), aragonite saturation, salinity, nutrient levels, photosynthetically active radiation (PAR) levels, attenuation coefficient at a wavelength of 490 nanometers, light penetration depth and dust. For many of these, annual averages were considered alongside monthly extremes and other measures of inter-annual variability.

Once the models were trained, they were used to study future habitat suitability within a species-specific study area, reflecting the current range of the species and the areas it could potentially reach as larvae carried by ocean currents. Future SST, salinity and aragonite saturation values were based on model output from the UK Earth System Model version 1 (UKESM1; Sellar et al., 2019), a next-generation Earth System Model developed jointly by the UK’s Natural Environment Research Council (NERC) and the Met Office.

These datasets were produced for the study in the article "Paris Agreement could prevent regional mass extinctions of coral species", by Elena Couce, Benjamin Cowburn, David Clare and Joanna K. Bluemel, Global Change Biology (2023; https://doi.org/10.1111/gcb.16690). See also the R code and associated dataset available at CefasRepRes/Training_MaxEnt_model_for_a_coral_species_with_connectivity (github.com; DOI: 10.5281/zenodo.7788469)
DOI: 10.6084/m9.figshare.29839544
title: Global dataset of leaf area and mycorrhizal type

description: Global leaf area response of plants of different mycorrhizal types to climate and soil
DOI: 10.6084/m9.figshare.29839544.v1
title: Global dataset of leaf area and mycorrhizal type

description: Global leaf area response of plants of different mycorrhizal types to climate and soil
DOI: 10.6084/m9.figshare.28070105
title: Data for "Bridging the polarimetric structure and lightning activity of isolated thunderstorm cells during the cloud life cycle"

description: In a manuscript entitled "Bridging the polarimetric structure and lightning activity of isolated thunderstorm cells during the cloud life cycle". The data of our results are including in the Data_for_Fig_x.fig. These files can be opened by MATLAB R2020b(or later). The data supports the aforementioned manuscript and can be used freely for scientific purposes with appropriate citation.
DOI: 10.6084/m9.figshare.28070105.v3
title: Data for "Bridging the polarimetric structure and lightning activity of isolated thunderstorm cells during the cloud life cycle"

description: In a manuscript entitled "Bridging the polarimetric structure and lightning activity of isolated thunderstorm cells during the cloud life cycle". The data of our results are including in the Data_for_Fig_x.fig. These files can be opened by MATLAB R2020b(or later). The data supports the aforementioned manuscript and can be used freely for scientific purposes with appropriate citation.
DOI: 10.15468/dl.t9fu88
title: Occurrence Download

description: A dataset containing 16734 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is Human Observation",
 "Year is greater than or equal to 2009",
 "Year is less than or equal to 2025",
 "Country is one of (United States of America)",
 "StateProvince is California",
 "TaxonKey is Ammodramus savannarum"
 ]
}

 The dataset includes 16734 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020012-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28070105.v2
title: Data for "Bridging the polarimetric structure and lightning activity of isolated thunderstorm cells during the cloud life cycle"

description: In a manuscript entitled "Bridging the polarimetric structure and lightning activity of isolated thunderstorm cells during the cloud life cycle". The data of our results are including in the Data_for_Fig_x.fig. These files can be opened by MATLAB R2020b(or later). The data supports the aforementioned manuscript and can be used freely for scientific purposes with appropriate citation.
DOI: 10.15468/dl.b9ajfh
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senna siamea",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020015-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hsdahq
title: Occurrence Download

description: A dataset containing 28602 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Philetairus socius)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 28602 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020018-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.76mamq
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ABA7730"
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020019-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17639/nott.7579
title: Resting-State fMRI cortical intranetwork, internetwork and network to limbic connectivities associated with resilience in youth from the ABCD study

description: A study protocol for the analysis of ABCD cohort data.
DOI: 10.15468/dl.y8jg35
title: Occurrence Download

description: A dataset containing 17565 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Philesturnus rufusater)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 17565 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020013-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18128/d070.v7.4
title: IPUMS Health Surveys: National Health Interview Survey, Version 7.4

description: The IPUMS NHIS is a harmonized set of data for over 50 years (1963-present) of the National Health Interview Survey (NHIS). The NHIS is the principal source of information on the health of the U.S. population, covering such topics as general health status, the distribution of acute and chronic illness, functional limitations, access to and use of medical services, insurance coverage, and health behaviors (such as exercise, diet, and tobacco and alcohol consumption). On average, the survey covers 40,000 persons each year. IPUMS NHIS facilitates cross-time comparisons of these invaluable survey data by coding variables identically across time and providing detailed documentation covering comparability issues for harmonized variables. IPUMS NHIS data are distributed for free through an online data access system (nhis.ipums.org) to any person who agrees to follow the responsible use guidelines set by the National Center for Health Statistics.
DOI: 10.15468/dl.w7vdt2
title: Occurrence Download

description: A dataset containing 265 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Redunca fulvorufula fulvorufula"
 ]
}

 The dataset includes 265 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020020-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16753324
title: Supporting information - Manuscript: "Fast and spatially heterogeneous cooling rates at amphibolite-facies conditions in the Lepontine Alps (Switzerland)"

description: Supporting information for the manuscript: 

“Fast and spatially heterogeneous cooling rates at amphibolite-facies conditions in the Lepontine Alps (Switzerland)” by Tagliaferri, A., Moulas, E., Schmalholz, S. M., & Schenker, F. L.

Submitted to Geochemistry, Geophysics, Geosystems.
DOI: 10.15468/dl.d2f89s
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Pternistis ochropectus)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020026-250802193616735/datasets/export for details.