cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17134430.v1
title: Supplementary Material for: Cisplatin-Based versus Carboplatin-Based Chemotherapy for Extrapulmonary Neuroendocrine Carcinomas: A Real-World Study

description: <b><i>Objective:</i></b> This study aimed to assess the survival differences between cisplatin/etoposide versus carboplatin/etoposide chemotherapy regimens in the management of patients with extrapulmonary neuroendocrine carcinomas (NECs). <b><i>Methods:</i></b> Administrative cancer care databases in the province of Alberta, Canada, were reviewed, and patients with extrapulmonary NECs (including those with small cell and large cell neuroendocrine carcinomas) who were treated with either cisplatin/etoposide or carboplatin/etoposide, 2004–2019, were reviewed. Kaplan-Meier survival estimates were used to compare the survival outcomes according to the type of platinum agent, and multivariable Cox regression analysis was used to assess the impact of the type of platinum agent on overall survival outcomes. <b><i>Results:</i></b> A total of 263 eligible patients were included in this analysis. These include 176 patients who received cisplatin/etoposide and 87 patients who received carboplatin/etoposide. Using Kaplan-Meier survival estimates, patients treated with cisplatin had better overall survival compared to patients treated with carboplatin (<i>p</i> = 0.005). Multivariable Cox regression analysis suggested that the following factors were associated with worse overall survival: higher Charlson comorbidity index (HR: 1.17; 95% CI: 1.05–1.30), gastrointestinal primary site (HR: 1.55; 95% CI: 1.12–2.14), stage IV disease (HR: 1.75; 95% CI: 1.28–2.38), and use of carboplatin (HR: 1.40; 95% CI: 1.02–1.92). <b><i>Conclusions:</i></b> The current study suggested that cisplatin/etoposide might be associated with better overall survival compared to carboplatin/etoposide among patients with extrapulmonary NECs. It is unclear if this is related to differences in inherent responsiveness to the 2 platinum agents or due to differences in comorbidity burden between the 2 treatment groups.
DOI: 10.6084/m9.figshare.19197056.v1
title: Single cell analysis of gene expression in the substantia nigra pars compacta of a pesticide-induced mouse model of Parkinson’s disease

description: "Single cell analysis of gene expression in the substantia nigra pars compacta of a pesticide-induced mouse model of Parkinson’s disease"<br>Arshad H. Khan1, Lydia K. Lee2, Desmond J. Smith1,3<br>1 Department of Molecular and Medical PharmacologyDavid Geffen School of Medicine, UCLALos Angeles, CA 90095-1735<br>2 Department of Obstetrics and GynecologyDavid Geffen School of Medicine, UCLALos Angeles, CA 90095-6928<br>3 To whom correspondence should be addressed:Department of Molecular and Medical PharmacologyDavid Geffen School of Medicine, UCLABox 951735, 23-151A CHSLos Angeles, CA 90095-1735Email: DSmith@mednet.ucla.edu<br><br><br>"Words" folder contains pdfs of the Manuscript and Supplementary Data.<br>"Supplementary_Tables" folder contains results from single cell RNA-seq (scRNA-seq) analysis.<br>"Behavior" folder contains data from pole and dot removal tests.<br>"Single_cell_RNA_data" folder contains scRNA-seq data from substantia nigra pars compacta (SNpc) of mice treated with combined dosing of the pesticides maneb and paraquat (MNPQ) or saline. Raw and filtered output from 10X Genomics Cell Ranger pipeline provided.
DOI: 10.6084/m9.figshare.20972071.v1
title: WWF Spatial Regions

description: This includes the files necessary to produce the figures found in the article "Revising the global biogeography of plant life cycles" along with the code <em>Figures_Code.R.</em> <br> These files are obtained from "<strong>Terrestrial Ecoregions of the World: A New Map of Life on Earth: A new global map of terrestrial ecoregions provides an innovative tool for conserving biodiversity (2001)</strong>". <br> *<strong>IMPORTANT</strong>* These should NOT be used by themselves <br> *<strong>IMPORTANT</strong>* Any use of this data beyond producing the figures within <em>Figures_Code.R</em> should check the Licensing of the original article for its use policy.
DOI: 10.6084/m9.figshare.28582751.v1
title: Fungal diversity in the Neotropics: Update on the Diversity and Taxonomy of Hydnaceae in Costa Rica

description: Much progress documenting the diversity and relationships within the Hydnaceae has been made over the past decades. Nevertheless, the diversity of the family is far from completely known, especially in neotropical regions which remain underexplored. Concentrated fieldwork to document the diversity and distribution of macrofungi in Costa Rica began in the late 1980s and continued through early 2000s. As most of the studies were morphology based, some species were identified only to genus level, provisionally named or misidentified. This study provides morphological and molecular evidence of new species of Hydnaceae previously and newly collected in a neotropical <i>Quercus </i>dominated forests in Costa Rica. Molecular phylogenies support the proposal of five new species: a yellow chanterelle <i>Ca. neotropicalis</i>, three <i>Craterellus </i>species: <i>Cr. griseohymeninus </i>sp. nov., <i>Cr. minutibrunneus </i>sp. nov., and <i>Cr. lamelligracilis </i>sp. nov., and a <i>Hydnum repandum </i>lookalike: <i>Hydnum pallideflavum </i>sp. nov.
DOI: 10.6084/m9.figshare.28952606.v31
title: Logic innovation NEW

description: Logic innovation
DOI: 10.6084/m9.figshare.748838.v1
title: Educational multimedia

description: this the multimedia in teaching learner's in stagegies
DOI: 10.6084/m9.figshare.11550774.v6
title: Red links from Ukrainian Wikipedia, dump September 2018

description: Dataset of Wikipedia red links from Ukrainian Wikipedia edition (dump from 20th of September, 2018). Table 'ukredlinks_final.csv' is a dataset of the most frequent 3 171 Ukrainian red links. They occur in 20 or more articles which have corresponding articles in English Wikipedia.Table 'ukredlinks_pairs_final.csv' consists of 2 957 927 pairs which are red links and their candidate pages from English Wikipedia. The pairs are created as a dictionary for Named Entity Linking task. Tables 'redlinks_train_set_indexes.csv' and 'redlinks_test_set_indexes.csv' are indexes for train and test sets of red link & English candidate page pairs.
DOI: 10.6084/m9.figshare.20153087.v1
title: Figure8.xlsx

description: C.R infection aggravated the MPTP-induced nigrostriatal system lesions
DOI: 10.6084/m9.figshare.23744760.v1
title: Supplementary Material for: A Prospective Randomized Controlled Pilot Study to Assess the Response and Tolerability of Cold Atmospheric Plasma for Rosacea

description: Introduction: Rosacea is a common, facial, chronic inflammatory skin disease. Due to its complex pathogenesis, adequate therapy of rosacea can be challenging. An innovative recent therapeutic tool is cold atmospheric plasma (CAP), which is already established in the treatment of chronic wounds and promising in different other skin diseases. Methods: In a split-face pilot study we investigated dielectric-barrier-discharged CAP in erythemato-telangiectatic (ETR) and/or papulopustular rosacea (PPR). CAP treatment was applied on lesional skin of a randomized side once daily (90 seconds/area) for six weeks. The other untreated side served as control. Co-primary endpoints were ≥1 improvement of the Investigator Global Assessment (IGA) score on the treated side compared to control and a decline of the Dermatology Life Quality Index (DLQI) after six weeks. Secondary endpoints included inflammatory lesion count (papules and pustules), skin redness intensity and erythema size. Adverse events (AEs) were recorded constantly. Additionally, participants were weekly assessed for symptoms, skin condition, trigger factors, skin care, treatment success, and local tolerance parameters. All p-values were calculated using the Wilcoxon signed rank test. Results: Twelve subjects (ETR, n=3; ETR and PPR, n=9) completed the study. DLQI was significantly improved after six weeks (p=0.007). On the CAP-treated side, lesions (p=0.007) and erythema size (p=0.041) were significantly reduced compared to the control. IGA (p=0.2) and skin redness intensity (p=0.5) did not differ significantly between control and CAP-treated side. No serious AEs occurred and treatment was well tolerated. Conclusion: CAP is a promising new treatment of rosacea, especially for PPR.
DOI: 10.6084/m9.figshare.28107104.v1
title: The chromosome-level genome of <i>Lonicera caerulea</i>

description: The chromosome-level genome of <i>Lonicera caerulea</i>
DOI: 10.6084/m9.figshare.5332054.v1
title: 2898063.csv

description: The result of pressure calibration experiments
DOI: 10.6084/m9.figshare.7506950.v1
title: DIETARY SUPPLEMENTATION WITH PLANT OILS FROM COPAÍBA (Copaifera langsdorffii) AND SUCUPIRA (Pterodon emarginatus): QUALITY OF PHYSICAL ASPECTS OF EGGS STORED UNDER DIFFERENT TEMPERATURES

description: Abstract The aim of this study was to evaluate the effects of the dietary supplementation of laying hens with natural oils on the quality of fresh eggs stored under refrigeration ® and room temperature (RT). Hens were fed balanced corn-soybean diets supplemented with increasing levels of Copaifera langsdorffii (CP-0.03; 0.06 and 0.09%) or Pterodon emarginatus (SC-0.03 and 0.06%) oilresins plus a negative control (CN). Periodically, three eggs per treatments were evaluated for haugh unit (HU); yolk index (YI); yolk color (L*, a* e b*); yolk and albumen pH and percentages of shell (PS); albumen (PA) and yolk (PY). Statistical analysis was performed using a mixed model (SAS 9.3) and Tukey test. The supplementation of 0.06% CP and 0.03% SC preserved (p&lt;0.05) HU in eggs stored in RT during 14 days, similarly to results found in R. In addition, dietary supplementation of natural oils helped to control pH levels in yolks during RT storage. In conclusion, the dietary supplementation of copaiba and sucupira showed positive effects on albumen quality and yolk pH for eggs stored at room temperature, however, no additional effect was found for eggs stored chilled.
DOI: 10.17632/w8kms4g423
title: Data for: Fast methods of Debye-Hückel limiting slopes calculation and low-temperature extrapolation based on IAPWS equation of state of water

description: This dataset consists of two parts: 1) Tabulated values for the Debye-Hückel limiting slopes (Aphi, AH/(RT), AC/R, AV, AE, AK) obtained by means of IAPWS equations of state for water. They are stored in .csv files. 2) Software (IAPWS-DH library) that allows to calculate the Debye-Hückel limiting slopes using IAPWS95, IAPWS-IF97 equations. It also supports some other popular equations set (Archer-1990, Bradley&Pitzer-1979). This computer program is written in ANSI C and is cross-platform; at least MS Windows, GNU/Linux and DOS platforms are supported. The tables were calculated next way: * At T&gt;=273.15: direct usage of IAPWS95 equation. * At T&lt;273.15: usage of high-accurate approximation of IAPWS95 equation by means of 2D orthogonal polynomials (to overcome numerical differentiation accuracy problems). This approach allows to obtain the Debye-Hückel coefficients values for a very low temperature down to about 150 K that can be useful in thermodynamic modelling of very concentrated aqueous solutions using such models as Pitzer, eNRTL or eUNIQUAC models.
DOI: 10.6084/m9.figshare.16720621.v1
title: Unidirectional Kondo scattering in layered NbS2. Figure data.

description: Data used for generating plots in the manuscript "Unidirectional Kondo scattering in layered NbS<sub>2</sub>" by E. Martino et al., published in npj 2D Materials and Applications. The data cover all the plots in the main text and most of the plots in the Supplementary Information.<br>
DOI: 10.6084/m9.figshare.20006121.v1
title: Brazilian Loneliness Scale: Evidence of Validity Based on Relations to Depression, Anxiety and Stress

description: Abstract This paper aimed mainly to investigate the relationships between Brazilian Loneliness Scale (UCLA-BR) and the levels of depression, anxiety and stress in Brazilian college students. These concepts were assessed using validated scales (Patient Health Questionnaire - PHQ-9, Depression, Anxiety and Stress Scale - DASS-21, Beck Anxiety Inventory - BAI and Lipp Stress Symptom Inventory - ISSL). A total of 325 college students participated and responded all the instruments. Descriptive, correlational and group differences analyzes were conducted. The prevalence of depression, anxiety and stress varied depending on the instrument used. UCLA-BR presented evidence of validity based on relationships with depression, anxiety and stress, especially depression (assessed by DASS-21). Analysis of measurement scales can help to understand aspects of college students’ mental health.
DOI: 10.6084/m9.figshare.23971599.v1
title: Reproductive individuality of clonal fish raised in identical environments and its link to early-life behavioral individuality

description: Genetic and environmental differences are by far the most studied drivers underlying phenotypic variation. However, a growing number of studies finds among-individual variation that is unexplained by genetic or apparent environmental differences. Up to now, it remains an open question whether such seemingly stochastic variation has fitness consequences. To address this question, we performed a tightly controlled long-term life-history experiment with naturally clonal fish (Poecilia formosa) separated directly after birth into near-identical environments. Maintaining highly standardized conditions for 280 days, we first recorded individuals for 10 hours per day over the first 28 days of their lives, characterizing early-life behavioral profiles (activity and feeding behavior). We then measured the complete reproductive profiles of these individuals over an average of 4.5 successive broods per individual, quantifying in total 2522 offspring from 152 broods. Standard lengths of focal individuals were measured once a week. We estimated the growth coefficient (K), maximum predicted (i.e., asymptotic) size (Linf), and predicted size at parturition for each focal individual by fitting individual von Bertalanffy growth curves.
DOI: 10.6084/m9.figshare.26426038.v1
title: Large White Population SNP Genotypes Using GBS Technology

description: Genotyping using GBS technology: the genomic DNA was digested with the restriction endonucleases EcoRI and MspI; P1 and P2 barcode adapters that recognize EcoRI-MspI-compatible sequences were ligated to the digested DNA fragments; selectively amplified enzyme digestion products and Agilent 2100 were used to detect the library insert fragment size, and in the row reads, barcode sequences were removed; using 4 bp as a sliding window, the average base mass was calculated, and if it was lower than 20, the four bases and their subsequent sequences were removed; the length removed was less than 85 bp of reads. The clean data were aligned to the pig reference genome (Sscrofa11.1, Ensembl) using TASSEL5.0.
DOI: 10.6084/m9.figshare.9331748.v1
title: Data set for readers of International Journal of Circumpolar Health

description: Includes measurements of UV radiation, happiness, Human Development Index, genetic distance from South Africa, rule of law, government effectiveness, and economic freedom for 71 countries
DOI: 10.17632/664k9g9zr7
title: MiTMoJCo: Microscopic Tunneling Model for Josephson Contacts

description: MiTMoJCo (Microscopic Tunneling Model for Josephson Contacts) is C code which aims to assist modeling of superconducting Josephson contacts based on the microscopic tunneling theory. The code offers implementation of a computationally demanding part of this calculation, that is evaluation of superconducting pair and quasiparticle tunnel currents from the given tunnel current amplitudes (TCAs) which characterize the junction material. MiTMoJCo comes with a library of pre-calculated TCAs for frequently used Nb-AlOx-Nb and Nb-AlN-NbN junctions, a Python module for developing custom TCAs, supplementary optimum filtration module for extraction of a constant component of a sinusoidal signal and examples of modeling few common cases of superconducting Josephson contacts.
DOI: 10.6084/m9.figshare.3521975.v1
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.12248735.v1
title: Global and regional drivers of land-use emissions in 1961-2017

description: The Comprehensive Accounting of Land-Use Emissions (CALUE) database includes historical estimates of country-, process-, GHG- and product-specific land-use emissions (from both agricultural and land-use change emissions) from 1961 to 2017. <br><br>For methods and discussion, see the recommended citation: Chaopeng Hong, Jennifer A. Burney, Julia Pongratz, Julia E.M.S. Nabel, Nathaniel D. Mueller, Robert B. Jackson, and Steven J. Davis. Global and regional drivers of land-use emissions in 1961-2017, <i>Nature</i>, v. xx, p. xxx-xxx, doi: 10.1038/s41586-020-03138-y. <br>
DOI: 10.6084/m9.figshare.c.3611075_d8.v1
title: Additional file 1: Table S1. of Measure transcript integrity using RNA-seq data

description: Twelve RNA-seq datasets generated from human brain Glioblastoma (GBM) cell line2. Accession number, RNA Integrity Numbers (RIN), the median Transcript Integrity Numbers (medTIN), total read pairs, read pairs with mapping qualityâ  &gt;â  30, and number of genes with at least 10 reads are listed. (XLS 7 kb)
DOI: 10.6084/m9.figshare.28429064.v1
title: Validation reports + pdb files + map files of PDB ID 9LK4 and PDB ID 9LK5

description: Validation reports + pdb files + map files of PDB ID 9LK4 (EMD-63167) and PDB ID 9LK5 (EMD-63168)
DOI: 10.6084/m9.figshare.28920701.v2
title: Bacterial community raw data used in the article "<i>Land use interacts with climate to influence microbial diversity-to-biomass ratios across Europe via soil organic carbon and nitrogen</i>"

description: This dataset contains raw data on bacterial biomass, bacterial richness, and richness-to-biomass ratios used in the article <i>'Land use interacts with climate to influence microbial diversity-to-biomass ratios across Europe via soil organic carbon and nitrogen</i>". Metadata characterizing each soil sample in the bacterial dataset are also included.
DOI: 10.6084/m9.figshare.26045857.v1
title: Improved CAMS-EGG4 XCO<sub>2</sub> Dataset from 2003 to 2020

description: The dataset contains global 3-hourly XCO<sub>2</sub> estimates from 2003 to 2020. The dataset was generated by improving the CAMS-EGG4 XCO<sub>2</sub> measurements using a deep learning-based model. The unit of the data is ppm.
DOI: 10.6084/m9.figshare.28271294.v1
title: MatraGenoa3M.tar.gz

description: MatraGenoa3M, a dataset with 3 million structures generated by Matra-Genoa-MPAS.<br>Structures provided as CIF files.
DOI: 10.6084/m9.figshare.5128747.v1
title: Supplementary Material for: Are Anti-TNF-α Agents Safe for Treating Psoriasis in Hepatitis C Virus Patients with Advanced Liver Disease? Case Reports and Review of the Literature

description: Tumor necrosis factor-alpha (TNF-α) inhibitors represent an effective treatment for severe psoriasis in hepatitis C virus (HCV) patients. The literature reports mainly on short-term treatment in patients with chronic hepatitis with minimum-to-moderate activity with an acceptable safety profile. We report the first 2 cases of hepatocellular carcinoma (HCC) arising in HCV psoriatic patients with advanced liver disease during long-term treatment with etanercept. Our first patient, known to have had HCV infection for 41 years, developed an HCC after 21 months of therapy with etanercept (50 mg/week). The second patient, HCV+ for 20 years, was treated for 58 months with the same therapy, and despite no signs of liver function impairment was diagnosed with HCC. Both of them presented with cirrhosis, which was diagnosed 9 and 5 years earlier, respectively. It remains to be clarified whether there is any connection between psoriasis treatment with anti-TNF-α agents and the development of HCC in HCV-infected patients. Further long-term, follow-up studies and registries of HCV patients with mild/moderate activity may contribute to clarify this issue.
DOI: 10.6084/m9.figshare.7447982.v1
title: Supplementary Material for: The Effectiveness of a Virtual Reality-Based Tai Chi Exercise on Cognitive and Physical Function in Older Adults with Cognitive Impairment

description: <b><i>Background:</i></b> Tai Chi (TC) is a Chinese mind-body exercise with proven physical and psychological benefits. A modified TC via virtual reality (VR) may be suitable for the elderly owing to the immediate guidance and feedback regarding movement accuracy. This study explored the cognitive and physical effects of a VR-based TC (VRTC) exercise program on older adults with cognitive impairment (CI). <b><i>Methods:</i></b> Sixty older adults with CI were cluster-assigned to either the VRTC or the control group; the intervention was conducted twice weekly for 6 months. Outcomes included cognitive and physical functions. The movement accuracy score and attendance were recorded. Generalized estimating equation (GEE) and multiple regression analyses were performed. <b><i>Results:</i></b> Adjusted GEE analysis showed significant interaction effects in the 6-min walk test, 30-s sit-to-stand test, functional reach, 5-m gait speed, and abstract thinking and judgment. Overall, medium to large effect sizes (<i>d</i> = 0.50–0.82) were found in favor of the VRTC group. The average movement accuracy score in the first 3 months significantly predicted improvement in cognitive performance (<i>p</i> = 0.011). <b><i>Conclusions:</i></b> The VRTC exercise posed a protective effect for some cognitive and physical functions in older adults with CI. The more engaging the program, the greater the improvement in the cognitive performance.
DOI: 10.17632/jpmfgn6gmr
title: Precise Coulomb wave functions for a wide range of complex ℓ, η and z

description: Abstract A new algorithm to calculate Coulomb wave functions with all of its arguments complex is proposed. For that purpose, standard methods such as continued fractions and power/asymptotic series are combined with direct integrations of the Schrödinger equation in order to provide very stable calculations, even for large values of | η | or | ℑ (ℓ) |. Moreover, a simple analytic continuation for R (z) &lt; 0 is introduced, so that this zone of the complex z-plane does not pose any problem. This code is... Title of program: cwfcomplex Catalogue Id: ADYO_v1_0 Nature of problem The calculation of Coulomb wave functions with all of their arguments complex is revisited. The new methods introduced allow to greatly augment the range of accessible ell, Η, and z. Versions of this program held in the CPC repository in Mendeley Data ADYO_v1_0; cwfcomplex; 10.1016/j.cpc.2006.10.004 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.6084/m9.figshare.21430371.v1
title: Increased heat risk in wet climate induced by urban humid heat

description: Data and code in support of paper "Increased heat risk in wet climate induced by urban humid heat".
DOI: 10.6084/m9.figshare.21679035.v5
title: EEG datasets of stroke patients

description: This data set consists of electroencephalography (EEG) data from 50 (Subject1 – Subject50) participants with acute ischemic stroke aged between 30 and 77 years. The participants included 39 male and 11 female. The time after stroke ranged from 1 days to 30 days. 22 participants had right hemisphere hemiplegia and 28 participants had left hemisphere hemiplegia. All participants were originally right-handed. Each of the participants sat in front of a computer screen with an arm resting on a pillow on their lap or on a table and they carried out the instructions given on the computer screen. At the trial start, a picture with text description which was circulated with left right hand, were presented for 2s. We asked the participants to focus their mind on the hand motor imagery which was instructed, at the same time, the video of ipsilateral hand movement is displayed on the computer screen and lasts for 4s. Next, take a 2s break.