cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15454/bneusm/ceyyhs
title: Metadata-ForeêtsAnciennesPyrenees_Inspire.pdf

description: Fiche de métadonnées conforme Inspire pour les forêts anciennes des Pyrénées
DOI: 10.15454/bneusm/ehwvx5
title: EMPyreneesValid_L93_CDDAudreyGrel_DYNAFOR_v24042013.lyr

description: Fichier de symbologie (format .lyr d'Arcgis) sur l'attribut "occ" de la couche vecteur polygone "EMPyreneesValid_L93_CDDAudreyGrel_DYNAFOR_v24042013.shp"
DOI: 10.15454/bneusm/o4juht
title: Metadata_EMPyreneesValid_L93_CDDAudreyGrel_DYNAFOR_v24042013.pdf

description: Fiche de métadonnées décrivant la couche vecteur polygone « EMPyreneesValid_L93_CDDAudreyGrel_DYNAFOR_v24042013.shp »
DOI: 10.15454/bneusm/oxlgwm
title: Manuel_digitalisation_EM_Favre_et_al_2012_v11 2.pdf

description: Manuel de digitalisation des cartes anciennes de Favre C., Granier E., Cosserat-Mangeot R., Bachacou J., Dupouey J.L., 2012, Digitalisation des cartes anciennes. Manuel pour la vectorisation de l’usage des sols et le géoréférencement des minutes 1:40 000 de la carte d’Etat-Major. Version 11.2, INRA, 41 p.
DOI: 10.15454/bneusm/wzcpjy
title: EMPyreneesValid_L93_CDDAudreyGrel_DYNAFOR_v24042013.zip

description: Dossier zippé contenant la couche vecteur polygone « EMPyreneesValid_L93_CDDAudreyGrel_DYNAFOR_v24042013.shp » de la carte de l'occupation ancienne des sols du massif des Pyrénées, obtenue sur les cartes minutes d’Etat-Major (1850 environ)
DOI: 10.15454/bnkfvc/kqhsur
title: DataSet_UT_feeding.tab
DOI: 10.15454/bnkfvc/nu5zmv
title: Feeding_and_GrainLegumes_WoS_Query.txt
DOI: 10.15454/bp9pbl/eungzu
title: FooSIN-WP3-Resultat-Enquete_2021-02-25.tab

description: Résultats de l'enquête
DOI: 10.15454/bp9pbl/hsgpfy
title: readme.txt

description: :unav
DOI: 10.15454/bp9pbl/iaty9p
title: FooSIN-WP3-Enquete-LimeSurvey_2021.lss

description: Questions de l'enquête
DOI: 10.15454/bpjvvy/fzozgt
title: rpg_complete_2019_d56.zip

description: :unav
DOI: 10.15454/bpn57s/2dkqkl
title: LISEZMOI.txt

description: file to read before using the data fichier à lire avant d'utiliser les données
DOI: 10.15454/bpn57s/445ywd
title: README.txt

description: file to read before using the data fichier à lire avant d'utiliser les données
DOI: 10.15454/bpn57s/cmma5f
title: dictiona.txt

description: dictionary file
DOI: 10.15454/bpn57s/dbt9rx
title: metadata.txt

description: metadata file fichier de métadonnées
DOI: 10.15454/bpn57s/ezmx5j
title: attricod.txt

description: list of codes used in the data base liste des codes utilisés dans la base de données
DOI: 10.15454/bpn57s/o0p7ju
title: 30169_L93.zip

description: zip archive containing the files in shapefile format for the graphical layer of the Soil Geographical Data base of France at 1:1,000,000 archive zip contenant les fichiers en format shapefile pour la couche graphique de la Base de Données Géographique des SDols de France à 1:1 000 000
DOI: 10.15454/bpn57s/q14tbe
title: stuorg.tab

description: File describing the relation between the Soil Typological Units and the Soil Mapping Units
DOI: 10.15454/bpn57s/qejhzr
title: smu.tab

description: file describing the Soil Mapping Units
DOI: 10.15454/bpn57s/qjgbo0
title: stu.tab

description: File describing the Soil Typological Units
DOI: 10.15454/bqhgr9/c5pown
title: 1H-NMR_Annotation-Quantification.xlsx

description: 1H NMR Annotation and Quantification.
DOI: 10.15454/bqhgr9/d13b5b
title: Summary of the quantification by 1D 1H-NMR of polar extract of the fruit mixed-stage samples.tab

description: Table of metabolite contents (µmol/g DW) quantified by 1D 1H-NMR of polar extracts of the fruit mixed-stage samples of Apple, Clementine, Cucumber, Eggplant, Grape, Kiwifruit, Peach and Pepper.
DOI: 10.15454/bqhgr9/johiij
title: Summary of the NMR assignment of 1D 1H-NMR spectra of polar extract of the fruit mixed-stage samples.tab

description: 1H-NMR assignments table of metabolites detected at 500 MHz in polar extracts of the fruit mixed-stage samples of Apple, Clementine, Cucumber, Eggplant, Grape, Kiwifruit, Peach and Pepper - Frimouss project
DOI: 10.15454/bqhgr9/qii9vs
title: Description file Dataverse 1H-NMR profiling of 8 fleshy fruits _mixed-stage samples.pdf

description: Description of the 8 fleshy fruit species, their growth and harvest, of the extraction and NMR acquisition of the mixed-stage samples
DOI: 10.15454/bqhgr9/ucn9as
title: LRBBI_PMB_Mixed-stage fruit samples 1HNMR.zip

description: 8 NMR spectra directories in Bruker format
DOI: 10.15454/budu7e/wfnpwi
title: rpg_complete_2019_d30.zip

description: :unav
DOI: 10.15454/bujusx/4kzwle
title: Annecy_France_RawProfiles_Secchi.tab

description: Time series dataset of secchi depths profiles in Lake Annecy
DOI: 10.15454/bujusx/o7sblq
title: Geneva_France_RawProfiles_Secchi.tab

description: Time series dataset of secchi depths profiles in Lake Geneva
DOI: 10.6084/m9.figshare.16619773.v25
title: Data from "Notch-dependent and -independent transcription are modulated by tissue movements at gastrulation"

description: Data from "Levels of Notch-regulated transcription are modulated by tissue movements at gastrulation":<br>- raw MS2 Live imaging movies: 124 '.lif' files captured in a Leica SP8 confocal. Each is a 1-2h movie of a developing fly embryo in the genetic condition described in the file name. The metadata file contains the information linking each movie with parameters used for image analysis and identifier of the genetic condition ("nickname" column).<br>- data obtained from image analysis: '.mat' files obtained from MATLAB after image analysis for each movie. README contains information of the data structure and all variables stored in each.<br>- numerical data used for figures: text files containing data points used in all figures in the paper. "NumericalData.txt" contains the information about each plot, axes, figure where it's used and name of the file containing the numerical data.
DOI: 10.15454/bujusx/rdn3l7
title: Annecy_France_RawProfiles_Physico.tab

description: Time series dataset of dissolved oxygen, water temperature and total phosphorus concentrations profiles in Lake Annecy
DOI: 10.15454/bujusx/z2ewl7
title: Geneva_France_RawProfiles_Physico.tab

description: Time series dataset of dissolved oxygen, water temperature and total phosphorus concentrations profiles in Lake Geneva
DOI: 10.15454/bynehb/cy9lc0
title: RMD_Manuscript_Host_Range-1.Rmd

description: :unav
DOI: 10.15454/bynehb/mhcwgx
title: RMD_Manuscript_Host_Range-1.html

description: :unav
DOI: 10.15454/bynehb/oks5jt
title: PERFORMANCE-1.tab

description: :unav
DOI: 10.15454/bynehb/snn7hj
title: Data_compo_fruits_clean-1.tab

description: :unav
DOI: 10.15454/bynehb/tzwh8e
title: README-1.txt

description: :unav
DOI: 10.15454/bynehb/xfjnti
title: PREFERENCE_Eggs-1.tab

description: :unav
DOI: 10.15454/bzg0r7/0quhhi
title: DataSet_UT_allergy.tab
DOI: 10.15454/bzg0r7/zzlcin
title: Allergy_and_GrainLegumes_WoS_Query.txt
DOI: 10.15454/bzvxg0/evwp1i
title: rpg_complete_2018_d43.zip

description: :unav
DOI: 10.15454/c1vvv9/t18b2t
title: data used in D2_4.tab

description: :unav
DOI: 10.15454/c3qy4b/qyx1by
title: Root_dynamics_2009-2013.tab

description: :unav
DOI: 10.15454/c3xh6h/hr0s7k
title: Data S1.txt

description: Data S1. Homoeologous gene data
DOI: 10.15454/c4jrpp/f9kr7f
title: Villain et al_anticipation_pseudo_social_context_acoustics_spectral.txt

description: spectral parameters of grunts
DOI: 10.15454/c4jrpp/fpkrho
title: Villain et al_anticipation_pseudo_social_context_behaviour.txt

description: behavioural data
DOI: 10.15454/c4jrpp/lvxxbk
title: Villain et al_anticipation_pseudo_social_context_acoustics_temporal.txt

description: temporal parameters of grunts
DOI: 10.15454/c8ipii/4k3obw
title: 02b_apple241_Tree_values_multispectral_imaging.tab

description: This file contains the raw phenotypic data, with one value per individual tree, for vegetation indices computed in the orchard on the apple tree core-collection and issued from airborne multispectral imaging. The first column is the variety identifier “MUNQ”. It also contains the following columns: -Date: the date of measurements – X: X position (rank) of the tree in the orchard – Y: Y position (within the rank) of the tree in the orchard – Scenario: watering scenario of the tree (WW for well-watered, WD for water deficit) – Flight: drone flight number within each day of measurements (3 consecutive flights were necessary to cover the whole orchard) – NDVI, GNDVI, MCARI2: multispectral-based vegetation indices values. Multispectral-based index values (NDVI, GNDVI, and MCARI2) were extracted for each pixel within the buffer zone. Mean of pixels values was calculated inside a 0.70m radius zone (buffer zone) delineated around tree centers, considering all the pixels.
DOI: 10.15454/c8ipii/6lfrew
title: 01_apple241_varieties_final.tab

description: This file contains the description of the 241 varieties of an apple tree core-collection planted and phenotyped at Diascope INRAE experimental unit in Mauguio near Montpellier (South of France). It follows the assignment of MUNQ (Malus UNiQue genotype) codes to a large set of apple accessions genotyped with common SSR (microsatellite) markers as described in Denancé et al. 2020 (https://doi.org/10.15454/HKGMAS). It contains the following columns: - Accession_Number: Unique identifier of the accession in the collection - Accession_Name: Name of the accession as submitted from the original collection - MUNQ: Malus UNiQue genotype code assigned according to duplicate group (or singleton) - MUNQ_Preferred_Name: The preferred name attributed to the MUNQ - Country: Country of the organisation owning the accession - Institute_Acronym: Acronym of the organisation owning the accession. The Comment column indicates if an accession different from the one planted and phenotyped in Montpellier, but with the same MUNQ, was used for genotyping with the 480K Axiom© array.
DOI: 10.15454/c8ipii/eswl47
title: 02a_apple241_Tree_values_thermal_imaging.tab

description: This file contains the raw phenotypic data, with one value per individual tree, for canopy surface temperature -related traits measured in the orchard on the apple tree core-collection from airborne thermal imaging. The first column is the variety identifier “MUNQ”. It also contains the following columns: -Date: the date of measurements – X: X position (rank) of the tree in the orchard – Y: Y position (within the rank) of the tree in the orchard – Scenario: watering scenario of the tree (WW for well-watered, WD for water deficit) – Flight: drone flight number within each day of measurements (3 consecutive flights were necessary to cover the whole orchard) – Tair: average air temperature over the measurement period (°C) – Ts: canopy surface temperature (°C) within a 0.70m radius zone (buffer zone) delineated around the individual tree centre; the leaf multispectral signature was used to classify images and discard soil pixels , and mean of pixels values was calculated inside the buffer zone considering the tree vegetation pixels only – TSTA: difference between surface and air temperature (Ts – Tair in °C).
DOI: 10.15454/c8ipii/nz9huw
title: 03_apple241_BLUPs_values.tab

description: This file contains the BLUPs (Best Linear Unbiased Predictors) of genotypic means, with one value per variety, for the tree architecture, canopy shape, vegetation indices and canopy surface temperature -related traits measured in the orchard on the apple tree core-collection. The first column is the variety identifier “MUNQ”. It also contains in the following columns: (1) BLUPs of architecture-related traits derived from T-LiDAR scans - a_volume: alpha hull volume (m3) – c_volume: convex hull volume (m3) – ci: convexity index calculated as the ratio a_volume/c_volume – STAR: silhouette to total leaf area ratio – height: tree height (m) – nb_axes: number of axes – total_length: total cumulative axis length (m). (2) Manual measurements - TCSA: trunk cross sectional area (cm²). (3) BLUPs of integrative variables calculated from a PCA on traits from (1) and (2) – Dim.1: first dimension of the PCA, representative of vegetative development – Dim.2: second dimension of the PCA, representative of light interception capacity. (4) BLUPs of difference between canopy surface and air temperature (TSTA) obtained from thermal imaging (°C) – TSTA.WW.07_05, TSTA.WW.07_12, TSTA.WW.07_17, TSTA.WW.07_27: BLUPs of TSTA for well-watered trees respectively on 5th, 12th, 17th and 27th July 2017- TSTA.WW.all_dates: BLUP of TSTA for well-watered trees calculated using data collected on the four dates - TSTA.WD.07_05, TSTA.WD.07_12, TSTA.WD.07_17, TSTA.WD.07_27: BLUP of TSTA for water deficit trees respectively on 5th, 12th, 17th and 27th July 2017 - resp.TSTA.07_05, resp.TSTA.07_12, resp.TSTA.07_17, resp.TSTA.07_27: difference between BLUPs of TSTA.WD and of TSTA.WW at each date respectively. (5) BLUPs of of vegetation indices obtained from multispectral imaging - NDVI.WW.07_05, NDVI.WW.07_12, NDVI.WW.07_17, NDVI.WW.07_27, NDVI.WW.all_dates: BLUPs of NDVI for well-watered trees respectively on 5th, 12th, 17th and 27th July 2017, and using data collected on the four dates - NDVI.WD.07_05, NDVI.WD.07_12, NDVI.WD.07_17, NDVI.WD.07_27, NDVI.WD.all_dates: BLUPs of NDVI for water deficit trees respectively on 5th, 12th, 17th and 27th July 2017, and using data collected on the four dates - NDVI.all_dates: BLUPs of NDVI calculated using data collected on the four dates and both watering scenarios –Following columns: same as described for NDVI, for GNDVI and MCARI2.
DOI: 10.15454/c8ipii/xde1qd
title: 02c_apple241_Tree_values_LiDAR.tab

description: This file contains the raw phenotypic data, with one value per individual tree, for the tree architecture and canopy shape -related traits measured in the orchard on the apple tree core-collection from T-LiDAR and manual measurements. Notice that these traits can be considered as constitutive as they do not correspond to responses to water scenarios. The first column is the variety identifier “MUNQ”. It also contains the following columns: X: X position (rank) of the tree in the orchard – Y: Y position (within the rank) of the tree in the orchard – Scenario: watering scenario of the tree (WW for well-watered, WD for water deficit). Architecture-related variables (from winter T-LiDAR scans): nb_axes: number of axes – total_length: total cumulative axis length (m). Canopy shape-related variables (from summer T-LiDAR scans): c_volume: convex hull volume that represents the maximal space occupation of the tree (m3) - a_volume: alpha hull volume that represents the volume filled by leaves within this convex hull (m3) – ci: convexity index computed as the ratio a_volume/c_volume – height: plant height (m) – STAR: Silhouette to Leaf Area Ratio. Manual measurements: TCSA: Trunk cross sectional area (cm²), computed from the trunk circumference measured with a tape measure. Integrative variables calculated from a PCA on architectural traits – Dim.1: first dimension of the PCA, representative of vegetative development – Dim.2: second dimension of the PCA, representative of light interception capacity.
DOI: 10.15454/c8ipii/zkcref
title: 00_Data_outline.pdf

description: Overview of the experimental setup and of the files contained in this dataset.
DOI: 10.15454/c9laef/0ddxmq
title: ODAM_install_VirtualBox.pdf

description: ODAM Installation Guide - This document describes how to install a virtual machine embedding the ODAM software suite on Oracle VM VirtualBox
DOI: 10.15454/c9laef/fepb77
title: ODAM_install_VirtualBox.pdf

description: ODAM Installation Guide
DOI: 10.15454/c9laef/v0nxws
title: odam_vbox_vdi_x64.7z

description: ODAM Virtual Disk Image (VDI) for Oracle VM VirtualBox - Zipped with 7zip.
DOI: 10.15454/c9laef/x3xtf3
title: ODAM_install_VirtualBox.pdf

description: ODAM Installation Guide - This document describes how to install a virtual machine embedding the ODAM framework software on Oracle VM VirtualBox
DOI: 10.15454/cac5cp/9iq3mx
title: CIRCASA_D1.2_RequirementsKIS.pdf
DOI: 10.15454/cafqk9/efocgu
title: 1-ARPgrid2011_WGS84.zip
DOI: 10.15454/cafqk9/zuht8p
title: README_resistivites spatialisees.odt
DOI: 10.15454/cdukml/0qirgv
title: methane_6852_corn.txt

description: :unav
DOI: 10.15454/cdukml/3bop1x
title: conc_6842wheat.txt

description: :unav
DOI: 10.15454/cdukml/3dazqr
title: conc_6841corn.txt

description: :unav
DOI: 10.15454/cdukml/3v28yk
title: conc_6852wheat.txt

description: :unav
DOI: 10.15454/cdukml/4ow4pf
title: conc_6874wheat.txt

description: :unav
DOI: 10.15454/cdukml/6jo0te
title: methane_6841_corn.txt

description: :unav
DOI: 10.15454/cdukml/7nzrxw
title: WMI_6874_wheat.txt

description: :unav
DOI: 10.15454/cdukml/7sgqyh
title: WMI_6842_corn.txt

description: :unav
DOI: 10.15454/cdukml/8zrknn
title: WMI_6879_corn.txt

description: :unav
DOI: 10.15454/cdukml/aw9fx6
title: conc_6879corn.txt

description: :unav
DOI: 10.6084/m9.figshare.12062022
title: Additional file 3 of Dafachronic acid and temperature regulate canonical dauer pathways during Nippostrongylus brasiliensis infectious larvae activation

description: Additional file 3: Data S3.Nippostrongylus brasiliensis dauer homolog predicted protein sequences.
DOI: 10.6084/m9.figshare.12062022.v1
title: Additional file 3 of Dafachronic acid and temperature regulate canonical dauer pathways during Nippostrongylus brasiliensis infectious larvae activation

description: Additional file 3: Data S3.Nippostrongylus brasiliensis dauer homolog predicted protein sequences.
DOI: 10.6084/m9.figshare.21499209
title: Repeat annotaion of Megalurothrips usitatus

description:  Repeat sequences of <em>M. usitatus</em> were annotated using the commonly used automated pipeline of the Extensive de-novo TE Annotator
DOI: 10.6084/m9.figshare.21499212
title: Function annotaion of Megalurothrips usitatus

description: function annotation of Megalurothrips usitatus genomes,   including NR, Gene Ortholog (GO) , Cluster of Orthologous Groups of proteins (COG) , Kyoto Encyclopedia of Genes and Genomes (KEGG) ,Swiss-Prot  and Pfam
DOI: 10.6084/m9.figshare.12062028
title: Additional file 4 of Dafachronic acid and temperature regulate canonical dauer pathways during Nippostrongylus brasiliensis infectious larvae activation

description: Additional file 4: Data S4. Primer sequences.
DOI: 10.6084/m9.figshare.12062028.v1
title: Additional file 4 of Dafachronic acid and temperature regulate canonical dauer pathways during Nippostrongylus brasiliensis infectious larvae activation

description: Additional file 4: Data S4. Primer sequences.
DOI: 10.6084/m9.figshare.12062031
title: Additional file 5 of Dafachronic acid and temperature regulate canonical dauer pathways during Nippostrongylus brasiliensis infectious larvae activation

description: Additional file 5: Data S5.Nippostrongylus brasiliensis StringTie-predicted transcript genome annotations.
DOI: 10.6084/m9.figshare.12062031.v1
title: Additional file 5 of Dafachronic acid and temperature regulate canonical dauer pathways during Nippostrongylus brasiliensis infectious larvae activation

description: Additional file 5: Data S5.Nippostrongylus brasiliensis StringTie-predicted transcript genome annotations.
DOI: 10.6084/m9.figshare.21499227
title: Multiple tissue-specific epigenetic alterations regulate persistent gene expression changes following developmental DES exposure in mouse reproductive tissues

description: Clinically, developmental exposure to the endocrine disrupting chemical, diethylstilboestrol (DES), results in long-term male and female infertility. Experimentally, developmental exposure to DES results in abnormal reproductive tract phenotypes in male and female mice. Previously, we reported that neonatal DES exposure causes ERα-mediated aberrations in the transcriptome and in DNA methylation in seminal vesicles (SVs) of adult mice. However, only a subset of DES-altered genes could be explained by changes in DNA methylation. We hypothesized that alterations in histone modification may also contribute to the altered transcriptome during SV development. To test this idea, we performed a series of genome-wide analyses of mouse SVs at pubertal and adult developmental stages in control and DES-exposed wild-type and ERα knockout mice. Neonatal DES exposure altered ERα-mediated mRNA and lncRNA expression in adult SV, including genes encoding chromatin-modifying proteins that can impact histone H3K27ac modification. H3K27ac patterns, particularly at enhancers, and DNA methylation were reprogrammed over time during normal SV development and after DES exposure. Some of these reprogramming changes were ERα-dependent, but others were ERα-independent. A substantial number of DES-altered genes had differential H3K27ac peaks at nearby enhancers. Comparison of gene expression changes, H3K27ac marks and DNA methylation marks between adult SV and adult uterine tissue from ovariectomized mice neonatally exposed to DES revealed that most of the epigenetic changes and altered genes were distinct in the two tissues. These findings indicate that the effects of developmental DES exposure cause reprogramming of reproductive tract tissue differentiation through multiple epigenetic mechanisms.
DOI: 10.6084/m9.figshare.21499227.v1
title: Multiple tissue-specific epigenetic alterations regulate persistent gene expression changes following developmental DES exposure in mouse reproductive tissues

description: Clinically, developmental exposure to the endocrine disrupting chemical, diethylstilboestrol (DES), results in long-term male and female infertility. Experimentally, developmental exposure to DES results in abnormal reproductive tract phenotypes in male and female mice. Previously, we reported that neonatal DES exposure causes ERα-mediated aberrations in the transcriptome and in DNA methylation in seminal vesicles (SVs) of adult mice. However, only a subset of DES-altered genes could be explained by changes in DNA methylation. We hypothesized that alterations in histone modification may also contribute to the altered transcriptome during SV development. To test this idea, we performed a series of genome-wide analyses of mouse SVs at pubertal and adult developmental stages in control and DES-exposed wild-type and ERα knockout mice. Neonatal DES exposure altered ERα-mediated mRNA and lncRNA expression in adult SV, including genes encoding chromatin-modifying proteins that can impact histone H3K27ac modification. H3K27ac patterns, particularly at enhancers, and DNA methylation were reprogrammed over time during normal SV development and after DES exposure. Some of these reprogramming changes were ERα-dependent, but others were ERα-independent. A substantial number of DES-altered genes had differential H3K27ac peaks at nearby enhancers. Comparison of gene expression changes, H3K27ac marks and DNA methylation marks between adult SV and adult uterine tissue from ovariectomized mice neonatally exposed to DES revealed that most of the epigenetic changes and altered genes were distinct in the two tissues. These findings indicate that the effects of developmental DES exposure cause reprogramming of reproductive tract tissue differentiation through multiple epigenetic mechanisms.
DOI: 10.6084/m9.figshare.12586339
title: Additional file 1 of Epidemiologically characteristics of human brucellosis and antimicrobial susceptibility pattern of Brucella melitensis in Hinggan League of the Inner Mongolia Autonomous Region, China

description: Additional file 1: Table S1. Table representing strain identification codes (Key), GT (MLVA-16), MLVA-8, MLVA-11, biovars, host, regions, and year of isolation for 54 B. melitensis isolates.
DOI: 10.6084/m9.figshare.12586339.v1
title: Additional file 1 of Epidemiologically characteristics of human brucellosis and antimicrobial susceptibility pattern of Brucella melitensis in Hinggan League of the Inner Mongolia Autonomous Region, China

description: Additional file 1: Table S1. Table representing strain identification codes (Key), GT (MLVA-16), MLVA-8, MLVA-11, biovars, host, regions, and year of isolation for 54 B. melitensis isolates.