cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20424132
title: Supplementary Material for: Mapping the pattern of essential neuroendocrine cells related to puberty and VA opsin expression provides further insight in the photoreceptive regulation of the BPG axis in Atlantic salmon (Salmo salar)

description: In Atlantic salmon (Salmo salar) seasonal photoperiod is shown to regulate the onset of sexual maturation, yet which brain region(s) are involved and how light information impacts the neuroendocrine system are still not fully understood in teleosts. Detailed knowledge about the photoperiodic regulation of maturation in fish is still missing. In birds, it is shown that gonadotrophin releasing hormone (GNRH) is located in the same neurons as vertebrate ancient (VA) opsin suggesting a direct photoreceptive regulation for onset of sexual maturity. This study presents a comprehensive topographic mapping of gnrh2, gnrh3, kisspeptin 2 (kiss2) gonadotrophin inhibiting hormone (gnih) and VA opsin using in situ hybridization on mature Atlantic salmon brains. Neurons positive for gnrh3 are expressed in the olfactory bulb and ventral telencephalon while gnrh2 positive neurons are located dorsally in midbrain tegmentum. Gnih expressing cell bodies are present in the ventral thalamus and extend caudally to the hypothalamus with kiss2 expressing cells appearing in a lateral position. VA opsin positive cells are present in the telencephalon, the rostro-dorsal ring of left habenula, the ventral thalamus and the midbrain tegmentum. The results show no similar co-location as found in birds, hypothesizing that the photoreceptive modulation of Gnrh in salmon may interact through neuronal networks. The topography analyses of the essential neuroendocrine cells related to sexual maturation in Atlantic salmon brain show that diencephalic (thalamus, hypothalamus) and midbrain (tegmentum) regions seem central for controlling sexual maturation.
DOI: 10.5281/zenodo.6674370
title: Data and scripts for the manuscript of svaRetro and svaNUMT: modular packages for annotating retrotransposed transcripts and nuclear integration of mitochondrial DNA in genome sequencing data

description: This upload include data and scripts supporting the results described in the manuscript of <em>svaRetro and svaNUMT: modular packages for annotating retrotransposed transcripts and nuclear integration of mitochondrial DNA in genome sequencing data</em><em>. </em>Detailed description of the contents can be found in README.txt.
DOI: 10.5281/zenodo.7006177
title: Data and scripts for the manuscript of svaRetro and svaNUMT: modular packages for annotating retrotransposed transcripts and nuclear integration of mitochondrial DNA in genome sequencing data

description: This upload include data and scripts supporting the results described in the manuscript of <em>svaRetro and svaNUMT: modular packages for annotating retrotransposed transcripts and nuclear integration of mitochondrial DNA in genome sequencing data</em><em>. </em>Detailed description of the contents can be found in README.txt.
DOI: 10.5281/zenodo.7053530
title: Data and scripts for the manuscript of svaRetro and svaNUMT: modular packages for annotating retrotransposed transcripts and nuclear integration of mitochondrial DNA in genome sequencing data

description: This upload include data and scripts supporting the results described in the manuscript of <em>svaRetro and svaNUMT: modular packages for annotating retrotransposed transcripts and nuclear integration of mitochondrial DNA in genome sequencing data</em><em>. </em>Detailed description of the contents can be found in README.txt.
DOI: 10.5281/zenodo.5968028
title: Data and scripts for the manuscript of svaRetro and svaNUMT: modular packages for annotating retrotransposed transcripts and nuclear integration of mitochondrial DNA in genome sequencing data

description: This upload include data and scripts supporting the results described in the manuscript of <em>svaRetro and svaNUMT: modular packages for annotating retrotransposed transcripts and nuclear integration of mitochondrial DNA in genome sequencing data</em><em>. </em>Detailed description of the contents can be found in README.txt.
DOI: 10.5281/zenodo.7053557
title: Data and scripts for the manuscript of svaRetro and svaNUMT: modular packages for annotating retrotransposed transcripts and nuclear integration of mitochondrial DNA in genome sequencing data

description: This upload include data and scripts supporting the results described in the manuscript of <em>svaRetro and svaNUMT: modular packages for annotating retrotransposed transcripts and nuclear integration of mitochondrial DNA in genome sequencing data</em><em>. </em>Detailed description of the contents can be found in README.txt.
DOI: 10.6084/m9.figshare.20689786
title: Data 1.xlsx and Data 2.xlsx

description: the data of water content and H isotope compositions in silicate grains of lunar soils
DOI: 10.6084/m9.figshare.20689786.v2
title: Data 1.xlsx and Data 2.xlsx

description: the data of water content and H isotope compositions in silicate grains of lunar soils
DOI: 10.6084/m9.figshare.20689786.v1
title: Data 1.xlsx and Data 2.xlsx

description: the data of water content and H isotope compositions in silicate grains of lunar soils
DOI: 10.6084/m9.figshare.19188917.v1
title: Meta-analysis on the response bacterial and fungal alpha-diversity to the pollution of soil, rhizosphere and sediments with heavy metals

description: Data for the meta-analysis
DOI: 10.5517/ccdc.csd.cc2bpzxy
title: CCDC 2166091: Experimental Crystal Structure Determination

description: Related Article: Fuqing Yu|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bq4y5
title: CCDC 2166247: Experimental Crystal Structure Determination

description: Related Article: Svenja Stürmer, Gerrit A. Luinstra|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bq5hr
title: CCDC 2166264: Experimental Crystal Structure Determination

description: Related Article: Svenja Stürmer, Gerrit A. Luinstra|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bq5r0
title: CCDC 2166272: Experimental Crystal Structure Determination

description: Related Article: Svenja Stürmer, Gerrit A. Luinstra|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bq5v3
title: CCDC 2166275: Experimental Crystal Structure Determination

description: Related Article: Svenja Stürmer, Gerrit A. Luinstra|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c2nbg
title: CCDC 2177295: Experimental Crystal Structure Determination

description: Related Article: Tomoyuki Takeyama, Koichiro Takao|2022|RSC Advances|12|24260|doi:10.1039/D2RA04639C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c2nch
title: CCDC 2177296: Experimental Crystal Structure Determination

description: Related Article: Tomoyuki Takeyama, Koichiro Takao|2022|RSC Advances|12|24260|doi:10.1039/D2RA04639C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c2ndj
title: CCDC 2177297: Experimental Crystal Structure Determination

description: Related Article: Tomoyuki Takeyama, Koichiro Takao|2022|RSC Advances|12|24260|doi:10.1039/D2RA04639C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7053677
title: Identification of genomic regions and candidate genes associated with body weight and body conformation traits in Karachai goats

description: The objective of this study was to investigate the genomic regions and candidate genes related to body weight and body conformation traits in Karachai goats at age 8 months in Russia by using genome wide association study (GWAS), we genotyped 269 goats and 53347 informative SNPs. SNPs were identified for all traits studied at age 8 months: body weight (5 SNPs), withers height (7 SNPs), rump height (9 SNPs), body length (6 SNPs), chest perimeter (4 SNPs), chest witdth (30 SNPs), chest depth (1 SNPs) and Rump width (5 SNPs). The most significant number of candidate genes was identified at Chr13 (33 candidate genes for the 5 traits). The most significant genes for body weight are <em>CRADD, HMGA2, MSRB3, MAX, HACL1 and RAB15</em>, which are growth factors with high expression in cell growth and development in animal body. <em>APOB, PTPRK, BCAR1</em>, <em>AOAH and ASAH1</em> genes have been associated with withers height, rump height and body length, these genes regulate metabolism process in cells and are involved in various metabolic processes, including fatty acid metabolism and lipopolysaccharide catabolism. Also, <em>WDR70, ZBTB24 </em>and <em>SORCS3</em> genes were linked to chest width. <em>KCNG4</em> was associated with rump height, body length and chest perimeter. The identificated candidate genes can be used as a molecular marker for growth traits selection in goats, which increase genetic improvement in russian goat breeds.
DOI: 10.5281/zenodo.7053676
title: Identification of genomic regions and candidate genes associated with body weight and body conformation traits in Karachai goats

description: The objective of this study was to investigate the genomic regions and candidate genes related to body weight and body conformation traits in Karachai goats at age 8 months in Russia by using genome wide association study (GWAS), we genotyped 269 goats and 53347 informative SNPs. SNPs were identified for all traits studied at age 8 months: body weight (5 SNPs), withers height (7 SNPs), rump height (9 SNPs), body length (6 SNPs), chest perimeter (4 SNPs), chest witdth (30 SNPs), chest depth (1 SNPs) and Rump width (5 SNPs). The most significant number of candidate genes was identified at Chr13 (33 candidate genes for the 5 traits). The most significant genes for body weight are <em>CRADD, HMGA2, MSRB3, MAX, HACL1 and RAB15</em>, which are growth factors with high expression in cell growth and development in animal body. <em>APOB, PTPRK, BCAR1</em>, <em>AOAH and ASAH1</em> genes have been associated with withers height, rump height and body length, these genes regulate metabolism process in cells and are involved in various metabolic processes, including fatty acid metabolism and lipopolysaccharide catabolism. Also, <em>WDR70, ZBTB24 </em>and <em>SORCS3</em> genes were linked to chest width. <em>KCNG4</em> was associated with rump height, body length and chest perimeter. The identificated candidate genes can be used as a molecular marker for growth traits selection in goats, which increase genetic improvement in russian goat breeds.
DOI: 10.21350/iw216516
title: Meisingset et al. Data: Impacts of human disturbance on flight response and habitat use of red deer_Ecosphere

description: Contains 3 datasets used in Meisingset et al. 2022. Impacts of human disturbance on flight response and habitat use of red deer published in Ecosphere.
DOI: 10.6084/m9.figshare.20975584
title: The Source data of small molecule-assisted assembly of multifunctional ceria nanozymes for the synergistic treatment of atherosclerosis

description: Summary of data collected by UV-vis, IR, spectrofluorometer, ICP-MS, and flow cytometry in this study
DOI: 10.6084/m9.figshare.20975584.v1
title: The Source data of small molecule-assisted assembly of multifunctional ceria nanozymes for the synergistic treatment of atherosclerosis

description: Summary of data collected by UV-vis, IR, spectrofluorometer, ICP-MS, and flow cytometry in this study
DOI: 10.6084/m9.figshare.16531512
title: Opium use and type 2 diabetes: a systematic review and meta-analysis

description: For many years, people and even some doctors believed that opium has beneficial effects on cardiovascular disease and diabetes. The effect of opium as a stimulator or inhibitor on the metabolic regulation system is challenging. This study aimed to investigate the relationship between opium and type 2 diabetes by meta-analysis. The present study was conducted based on the PRISMA checklist for systematic review and meta-analysis studies. Two researchers independently searched for standard keywords from international databases, Scopus, PubMed, ProQuest, Embase, and Web of Science without any time limits until 2019. The Joanna Briggs Institute (JBI) checklist was used for quality assessment of included studies. Data were analyzed using the random-effects model and CMA software. Twenty-four studies met our inclusion criteria. The meta-analysis results revealed no significant negative relationship between increased opium intake and decreased fasting blood sugar (<i>P</i>= ns). There was a statistically significant positive relationship between opium consumption and HbA1C increase in patients with type 2 diabetes (<i>P</i>&lt; .05). Unlike past beliefs, opium consumption not only reduces fasting blood sugar but on the contrary, consumption of opium increases the level of glycosylated hemoglobin in patients with type 2 diabetes.
DOI: 10.6084/m9.figshare.16531512.v1
title: Opium use and type 2 diabetes: a systematic review and meta-analysis

description: For many years, people and even some doctors believed that opium has beneficial effects on cardiovascular disease and diabetes. The effect of opium as a stimulator or inhibitor on the metabolic regulation system is challenging. This study aimed to investigate the relationship between opium and type 2 diabetes by meta-analysis. The present study was conducted based on the PRISMA checklist for systematic review and meta-analysis studies. Two researchers independently searched for standard keywords from international databases, Scopus, PubMed, ProQuest, Embase, and Web of Science without any time limits until 2019. The Joanna Briggs Institute (JBI) checklist was used for quality assessment of included studies. Data were analyzed using the random-effects model and CMA software. Twenty-four studies met our inclusion criteria. The meta-analysis results revealed no significant negative relationship between increased opium intake and decreased fasting blood sugar (<i>P</i>= ns). There was a statistically significant positive relationship between opium consumption and HbA1C increase in patients with type 2 diabetes (<i>P</i>&lt; .05). Unlike past beliefs, opium consumption not only reduces fasting blood sugar but on the contrary, consumption of opium increases the level of glycosylated hemoglobin in patients with type 2 diabetes.
DOI: 10.5281/zenodo.7053728
title: 1H, 11B and 1H-11B HSQC spectra for the paper "The assignment of 11B and 1H resonances in the post-reaction mixture from the dry synthesis of Li(BH3NH2BH2NH2BH3)"

description: Complete NMR datasets (Varian format) for the paper Nawrocka et al. "The assignment of 11B and 1H resonances in the post-reaction mixture from the dry synthesis of Li(BH3NH2BH2NH2BH3)" (DOI: 10.1002/mrc.5309)
DOI: 10.5281/zenodo.7053727
title: 1H, 11B and 1H-11B HSQC spectra for the paper "The assignment of 11B and 1H resonances in the post-reaction mixture from the dry synthesis of Li(BH3NH2BH2NH2BH3)"

description: Complete NMR datasets (Varian format) for the paper Nawrocka et al. "The assignment of 11B and 1H resonances in the post-reaction mixture from the dry synthesis of Li(BH3NH2BH2NH2BH3)" (DOI: 10.1002/mrc.5309)
DOI: 10.5519/qd.1saxbs1w
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1001 records)
DOI: 10.6084/m9.figshare.20976832
title: Supplementary Material for: Rediscovering Allergic Rhinitis: The Use of a Novel mHealth Solution to Describe and Monitor Health-Related Quality of Life in Elderly Patients

description: <b><i>Introduction:</i></b> Allergic rhinitis (AR) is a disease characterized by IgE-mediated hypersensitivity responses akin to allergic asthma. Although common in children and young adults, AR can be particularly vexing in the elderly: several studies have underlined its impact on the patient’s self-perceived health-related quality of life (HR-QoL). Available literature data on AR-affected elderly patients remain sparse and often focused on specific characteristics. mHealth solutions such as MASK-air® can be used in assessing salient clinical characteristics and unique shifts in self-perceived HR-QoL in old age people. With this pilot study, we aim to assess these variables in two cohorts of AR-affected elderly patients – one actively involved in the daily use of mHealth applications and the other having never used such a solution – by applying a widespread, validated, and standardized tool. <b><i>Methods:</i></b> AR-affected patients aged ≥65 years accessing the outpatient clinic of the Bari Geriatric Immuno-allergology Unit between March and July 2021 were enrolled and assigned to “mHealth” (MASK-air®) and “non-mHealth” cohorts accordingly. Each participant was given a 19-item questionnaire delivered via a custom software solution, with the EuroQoL EQ-5D-5L used to assess HR-QoL. <b><i>Results:</i></b> 93 patients (51 mHealth users, 43 non-mHealth users) were enrolled. AR was often either standalone or associated with asthma and conjunctivitis, and 57.4% of the participants reported a negative influence of AR on daily activities. Analysis of HR-QoL showed significantly worse scores in mobility and anxiety/depression dimensions for female patients regardless of app usage, while male non-mHealth users had worse self-care scores. Female mHealth users had worse scores for the self-care and activity dimensions, whereas female non-mHealth users showed worse scores on the pain scale. In general, mHealth users showed a greater degree of anxiety/depression when compared to non-mHealth users, relating to a greater awareness of their health status. <b><i>Conclusion:</i></b> The use of an mHealth solution, along with a concise, clinically-validated, comprehensive HR-QoL assessment toolset such as the EQ-5D, can prove beneficial in defining the unique characteristics of AR in the elderly. It can enable a detailed exploration of the impact on specific aspects of quality of life in old age. Raising patient awareness towards a health condition can improve compliance to treatment as well as follow-up. A lack of uniformity in approach, along with missing data pertaining to the general population are critical issues that require further studies. A more thorough diffusion of mHealth usage is also necessary among the geriatric population.
DOI: 10.5281/zenodo.7052345
title: 3D scanning data of the tooth surface of Japanese macaque (NMNS PV 6166-7) and the silicone impression molds of it

description: 3D scanning data of the tooth surface of Japanese macaque (NMNS PV 6166-7) and the silicone impression molds of it are saved in ".vk3", ".mnt", and ".sur" format, which are analyzed in: Sawaura, R., Kimura, Y., and Kubo, M. O. "Accuracy of Dental Microwear Impressions by Physical Properties of Silicone Materials" submitted to Frontiers in Ecology and Evolution. For details, please see the information in the paper.
DOI: 10.5281/zenodo.7052344
title: 3D scanning data of the tooth surface of Japanese macaque (NMNS PV 6166-7) and the silicone impression molds of it

description: 3D scanning data of the tooth surface of Japanese macaque (NMNS PV 6166-7) and the silicone impression molds of it are saved in ".vk3", ".mnt", and ".sur" format, which are analyzed in: Sawaura, R., Kimura, Y., and Kubo, M. O. "Accuracy of Dental Microwear Impressions by Physical Properties of Silicone Materials" submitted to Frontiers in Ecology and Evolution. For details, please see the information in the paper.
DOI: 10.34740/kaggle/dsv/4167983
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.6084/m9.figshare.20977168
title: Immunostaing HCV protocol

description: Immunostaining HCV on Huh7 cells
DOI: 10.5517/ccdc.csd.cc2c3nsy
title: CCDC 2178270: Experimental Crystal Structure Determination

description: Related Article: Nadir Ghichi, Amel Djedouani, Douniazed Hannachi, Chawki Bensouici, Ali Benboudiaf, Hocine Merazig, Helen Stoeckli-Evans|2023|J.Mol.Struct.|1271|134014|doi:10.1016/j.molstruc.2022.134014
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.20977714.v1
title: In vitro activity of A. mangium against HCV

description: In vitro activity of <em>A. mangium </em>against HCV <br>
DOI: 10.25573/serc.14346257
title: Dendrometer Data for Macrosystems Transcriptomic Research

description: These data contain the dendrometer band growth of five species of trees at two Forest Global Earth Observatory plots (and environs). ~250 trees at The Smithsonian Environmental Research Institute and Harvard Forest had dendrometer bands installed on them. At each site there were approximately 50 trees of five species: American beech, red maple, black cherry, red oak, and green ash. The data contain the weekly measurements of these trees from 2017-2019 excepting trees that died (a number of ash).