cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/pcra-c14-233102
title: United National Auxiliary Convention, COGIC, syllabus, 1990

description: [description english/roman)] United National Auxiliary Convention, Church of God in Christ (COGIC), syllabus, "UNAC in training, vo. VI", San Francisco, California, 1990 July 2-7.
DOI: 10.15468/dl.ntagz9
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-96.79490 -40.14214,-26.20510 -40.14214,-26.20510 -11.85786,-96.79490 -11.85786,-96.79490 -40.14214))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bulnesia sarmientoi Lorentz ex Griseb."
 ]
}

 The dataset includes 96 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0248343-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.153170
title: TÔD_pv_2004_02771

description: Référence : pv_2004_02771<br />Site : Tôd<br />Secteur : Crypte I (Temple de Montou); Temple de Montou<br />Type : photographie<br />
DOI: 10.34816/ifao.archives.153171
title: TÔD_pv_2004_02772

description: Référence : pv_2004_02772<br />Site : Tôd<br />Secteur : Crypte I (Temple de Montou); Temple de Montou<br />Type : photographie<br />
DOI: 10.15468/dl.aac3hr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eucalyptus arborella Brooker & Hopper",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043553-191105090559680/datasets/export for details.
DOI: 10.25549/pcra-c14-231879
title: COGIC, Department of Women, leadership conference guidelines, 1997

description: [description english/roman)] Church of God in Christ (COGIC), Department of Women, leadership conference guidelines, "Empowering the church for worldwide ministry", Houston, Texas, 1997 January 7-9.
DOI: 10.15468/dl.n3f7en
title: Occurrence Download

description: A dataset containing 3467 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prosopis velutina Wooton"
 ]
}

 The dataset includes 3467 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001446-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6uqra4
title: Occurrence Download

description: A dataset containing 290684 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carex sylvatica Huds."
 ]
}

 The dataset includes 290684 records from 1250 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085741-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2gabpv
title: Occurrence Download

description: A dataset containing 123291 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Oman"
 ]
}

 The dataset includes 123291 records from 302 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015291-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n85xa3
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Balaenoptera acutorostrata Lacépède, 1804",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material sample, Machine Observation)"
 ]
 }
 },
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2022",
 "Geometry POLYGON ((3.248569 56.08599, 2.611864 56.59433, 1.481749 58.42938, -0.4906956 63.88707, -0.4879058 64.12009, 10.12268 64.12009, 11.3151 64.11496, 11.31827 64.11486, 11.35991 64.113, 11.37749 64.10983, 11.38382 64.10522, 11.49361 64.01577, 11.50647 63.7827, 11.47652 58.98427, 11.47338 58.98101, 10.03003 58.26144, 8.888333 57.69667, 5.033333 56.59167, 3.248569 56.08599))"
 ]
}

 The dataset includes 82 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031618-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wdasgn
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyphostemma eminii (Gilg) Desc."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015412-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h7baww
title: Occurrence Download

description: A dataset containing 244281 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Themidaceae",
 "TaxonKey is Xanthorrhoeaceae"
 ]
}

 The dataset includes 244281 records from 471 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015293-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.96y49u
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nitella leptostachys A.Braun"
 ]
}

 The dataset includes 72 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0218180-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ejc6wp
title: Occurrence Download

description: A dataset containing 2323 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anabasis articulata (Forssk.) Moq."
 ]
}

 The dataset includes 2323 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134346-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11095033
title: SAB_isolates_assembly_annotation

description: Four organisms were isolated from shelf waters of the South Atlantic Bight; a diatom and coccolithophore from the inner shelf (C. closterium UGA8 and G. oceanica) and the outer shelf (C. closterium UGA4 and G. huxleyi, formerly E. huxleyi). Isolates were grown in steady state high and low iron treatments, with an additional 24hr iron amendment treatment. A hybrid De Novo transcriptome was created with rnaSPAdes for each isolate using Illumina NextSeq and PacBio IsoSeq sequencing. Notebooks associated with this data are on GitHub. 

Organism codes: 



08 : Inner shelf C. closterium UGA8

06: Inner shelf G. oceanica

04: Outer shelf C. closterium UGA4

13: Outher shelf G. huxleyi


Treatment codes:



pFe19: High Iron

pFe21_9: Low Iron

add_back: Iron amendment


File descriptions:



transcriptome_assemblies :  zip folder of hybrid assemblies for each isolate using rnaSPAdes





assembly04.fasta - C. closterium UGA4

assembly06.fasta - G. oceanica

assembly08.fasta - C. closterium UGA8

assembly13.fasta - G. huxleyi



predictORFs : zip folder of predicted open reading frames from each assembly using TransDecoder. .pep files are amino acids and .fasta are nucleotide sequences for each predicted ORF 



predict_orfs_04.pep, predict_orfs_04.fasta - C. closterium UGA4

predict_orfs_06.pep, predict_orfs_06.fasta - G. oceanica

predict_orfs_08.pep, predict_orfs_08.fasta - C. closterium UGA8

predict_orfs_13.pep, predict_orfs_13.fasta - G. huxleyi



orf_count : zip folder of salmon quantified predicted open reading frames named by isolate code, treatment, replicate.



C. closterium UGA4:



04add_backA_quant.sf, 04add_backB_quant.sf 

04pFe21_9A_quant.sf, 04pFe21_9B_quant.sf, 04pFe21_9C_quant.sf



G. oceanica:



06add_backA_quant.sf, 06add_backB_quant.sf, 06add_backC_quant.sf

06pFe19A_quant.sf, 06pFe19B_quant.sf, 06pFe19C_quant.sf

06pFe21_9A_quant.sf, 06pFe21_9B_quant.sf, 06pFe21_9C_quant.sf    



C. closterium UGA8:



08add_backB_quant.sf, 08add_backC_quant.sf

08pFe19A_quant.sf, 08pFe19B_quant.sf, 08pFe19C_quant.sf

08pFe21_9A_quant.sf, 08pFe21_9B_quant.sf, 08pFe21_9C_quant.sf



G. huxleyi:



13add_backA_quant.sf, 13add_backB_quant.sf, 13add_backC_quant.sf

13pFe19A_quant.sf, 13pFe19B_quant.sf, 13pFe19C_quant.sf

13pFe21_9A_quant.sf, 13pFe21_9B_quant.sf, 13pFe21_9C_quant.sf





annootations : zip folder of eggNOG-mapper functional annotations for each transcriptome



eggnog_anno_04 - C. closterium UGA4

eggnog_anno_06 - G. oceanica

eggnog_anno_08 - C. closterium UGA8

eggnog_anno_13 - G. huxleyi
DOI: 10.5281/zenodo.11095034
title: SAB_isolates_assembly_annotation

description: Four organisms were isolated from shelf waters of the South Atlantic Bight; a diatom and coccolithophore from the inner shelf (C. closterium UGA8 and G. oceanica) and the outer shelf (C. closterium UGA4 and G. huxleyi, formerly E. huxleyi). Isolates were grown in steady state high and low iron treatments, with an additional 24hr iron amendment treatment. A hybrid De Novo transcriptome was created with rnaSPAdes for each isolate using Illumina NextSeq and PacBio IsoSeq sequencing. Notebooks associated with this data are on GitHub. 

Organism codes: 



08 : Inner shelf C. closterium UGA8

06: Inner shelf G. oceanica

04: Outer shelf C. closterium UGA4

13: Outher shelf G. huxleyi


Treatment codes:



pFe19: High Iron

pFe21_9: Low Iron

add_back: Iron amendment


File descriptions:



transcriptome_assemblies :  zip folder of hybrid assemblies for each isolate using rnaSPAdes





assembly04.fasta - C. closterium UGA4

assembly06.fasta - G. oceanica

assembly08.fasta - C. closterium UGA8

assembly13.fasta - G. huxleyi



predictORFs : zip folder of predicted open reading frames from each assembly using TransDecoder. .pep files are amino acids and .fasta are nucleotide sequences for each predicted ORF 



predict_orfs_04.pep, predict_orfs_04.fasta - C. closterium UGA4

predict_orfs_06.pep, predict_orfs_06.fasta - G. oceanica

predict_orfs_08.pep, predict_orfs_08.fasta - C. closterium UGA8

predict_orfs_13.pep, predict_orfs_13.fasta - G. huxleyi



orf_count : zip folder of salmon quantified predicted open reading frames named by isolate code, treatment, replicate.



C. closterium UGA4:



04add_backA_quant.sf, 04add_backB_quant.sf 

04pFe21_9A_quant.sf, 04pFe21_9B_quant.sf, 04pFe21_9C_quant.sf



G. oceanica:



06add_backA_quant.sf, 06add_backB_quant.sf, 06add_backC_quant.sf

06pFe19A_quant.sf, 06pFe19B_quant.sf, 06pFe19C_quant.sf

06pFe21_9A_quant.sf, 06pFe21_9B_quant.sf, 06pFe21_9C_quant.sf    



C. closterium UGA8:



08add_backB_quant.sf, 08add_backC_quant.sf

08pFe19A_quant.sf, 08pFe19B_quant.sf, 08pFe19C_quant.sf

08pFe21_9A_quant.sf, 08pFe21_9B_quant.sf, 08pFe21_9C_quant.sf



G. huxleyi:



13add_backA_quant.sf, 13add_backB_quant.sf, 13add_backC_quant.sf

13pFe19A_quant.sf, 13pFe19B_quant.sf, 13pFe19C_quant.sf

13pFe21_9A_quant.sf, 13pFe21_9B_quant.sf, 13pFe21_9C_quant.sf





annootations : zip folder of eggNOG-mapper functional annotations for each transcriptome



eggnog_anno_04 - C. closterium UGA4

eggnog_anno_06 - G. oceanica

eggnog_anno_08 - C. closterium UGA8

eggnog_anno_13 - G. huxleyi
DOI: 10.15468/dl.3kh87w
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-90.17596 14.71473,-90.07182 15.00633,-90.77305 15.15213,-91.75892 15.17296,-92.03664 14.97162,-92.02969 14.64531,-91.74504 14.20791,-90.29399 14.11071,-90.17596 14.71473))",
 "TaxonKey is Plectrohyla sagorum Hartweg, 1941"
 ]
}

 The dataset includes 28 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0212297-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8p9xej
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chamaesium viridiflorum (Franch.) H.Wolff ex R.H.Shan"
 ]
}

 The dataset includes 72 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134209-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.92arrw
title: Occurrence Download

description: A dataset containing 2797 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material citation",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Occurrence evidence"
 ]
 },
 "Continent is South America",
 "Geometry POLYGON((-74.52164 -13.50906,-74.21951 -13.76999,-73.4642 -13.80844,-72.8627 -13.56125,-73.27332 -13.1995,-73.97644 -12.15984,-75.0531 -12.95337,-74.67819 -13.33054,-74.52164 -13.50906))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 2797 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0218178-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u9rgdc
title: Occurrence Download

description: A dataset containing 78 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chamaesphacos ilicifolius Schrenk"
 ]
}

 The dataset includes 78 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134213-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.az5ewq
title: Occurrence Download

description: A dataset containing 678 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Passerina rositae (Lawrence, 1874)",
 "Year 1970-2022"
 ]
}

 The dataset includes 678 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0218205-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.scj7ew
title: Occurrence Download

description: A dataset containing 14184 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((106.31934 13.44527,106.31554 12.0238,107.85483 12.07701,107.87004 13.45668,106.31934 13.44527))",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (EW, CR, EN, VU, NT, DD, NE)",
 "OccurrenceStatus is Present",
 "Year 1990-2023"
 ]
}

 The dataset includes 14184 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134223-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.me5dtc
title: Occurrence Download

description: A dataset containing 578 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia inaequilatera Sond."
 ]
}

 The dataset includes 578 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134222-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ruqymm
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is List of the specimens of the Vanuatu National Herbarium (PVNH)",
 "TaxonKey is Elatostema nemorosum Seem."
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0218251-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n9ujkj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Orthosia garmani Grote, 1879",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is Switzerland",
 "Country is Switzerland"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0396005-210914110416597/datasets/export for details.
DOI: 10.15468/dl.r6fpm5
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chamaexeros longicaulis T.D.Macfarl."
 ]
}

 The dataset includes 33 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134227-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uykr9q
title: Occurrence Download

description: A dataset containing 6233 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Caiman crocodilus (Linnaeus, 1758)"
 ]
}

 The dataset includes 6233 records from 171 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0218206-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zhrat7
title: Occurrence Download

description: A dataset containing 55907 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crithmum maritimum L."
 ]
}

 The dataset includes 55907 records from 348 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134355-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pcgrx7
title: Occurrence Download

description: A dataset containing 937 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Limonium cossonianum Kuntze"
 ]
}

 The dataset includes 937 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134364-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ka3myv
title: Occurrence Download

description: A dataset containing 378 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Occurrence evidence"
 ]
 },
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Eophona personata (Temminck & Schlegel, 1848)",
 "Year 1972-2022"
 ]
}

 The dataset includes 378 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0278843-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zwguub
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chaptalia oblonga D.Don"
 ]
}

 The dataset includes 11 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134377-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3p8gdr
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Metapenaeus lysianassa (De Man, 1888)"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0422091-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aha533
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chascanum insulare Moldenke"
 ]
}

 The dataset includes 66 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134512-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.