cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/rscbjbr9sj.3
title: Large Dataset of Labeled Optical Coherence Tomography (OCT) and Chest X-Ray Images

description: Be sure to download the most recent version of this dataset to maintain accuracy. This dataset contains thousands of validated OCT and Chest X-Ray images described and analyzed in "Identifying Medical Diagnoses and Treatable Diseases by Image-Based Deep Learning". The images are split into a training set and a testing set of independent patients. Images are labeled as (disease)-(randomized patient ID)-(image number by this patient) and split into 4 directories: CNV, DME, DRUSEN, and NORMAL. This repository of images is made available for use in research only. How to cite this data: Kermany D, Goldbaum M, Cai W et al. Identifying Medical Diagnoses and Treatable Diseases by Image-Based Deep Learning. Cell. 2018; 172(5):1122-1131. doi:10.1016/j.cell.2018.02.010.
DOI: 10.17910/b7cc74
title: Language, cognitive, and socio-emotional skills from 9 months until their transition to first grade in U.S. children from African-American, Dominican, Mexican, and Chinese backgrounds

description: This project is a longitudinal study of language, cognitive, social, emotional, and gender development from infants' birth through various critical transitions to schooling (preschool, kindergarten, 1st grade). Children came from diverse backgrounds (African-American, Dominican, Mexican, Chinese) and lived in the New York City metro area. Videos were recorded during various activities and tasks specific to each observation age (e.g., book reading, mother-child free play, novel toy, familiar toy at the 14-month visit) in children's homes or in the laboratory at 14, 24, 36, 52, 64, and 76 months of age.
DOI: 10.18434/m32189
title: NIST/SEMATECH e-Handbook of Statistical Methods (NIST Handbook 151)

description: The NIST/SEMATECH e-Handbook of Statistical Methods is a Web-based book written to help scientists and engineers incorporate statistical methods into their work as efficiently as possible. Ideally, it will serve as a reference which will help scientists and engineers design their own experiments and carry out the appropriate analyses when a statistician is not available to help. It is also hoped that it will serve as a useful educational tool that will help users of statistical methods and consumers of statistical information better understand statistical procedures and their underlying assumptions, and more clearly interpret scientific and engineering results stated in statistical terms.
DOI: 10.24381/cds.50ed0a73
title: Seasonal forecast subdaily data on pressure levels
DOI: 10.3886/e195487v1
title: Data and Code for: The Geography of Consumption and Local Economic Shocks: The Case of the Great Recession

description: We estimate across-county spending flows between firms and consumers for every county in the United States, providing a new consumption link that has not been studied previously. We highlight the importance of this link by estimating the effect of changes in local housing wealth on consumption and employment from 2001 to 2019. We generally find that the effect from changes in housing wealth crosses borders to affect consumption and employment in a pattern consistent with our spending flows. However, we find potential consumers who reside outside the local commuting zone disproportionately affect local spending and employment during the Great Recession.
DOI: 10.3886/e195882v1
title: Data and Code for: Wind of Change? Cultural Determinants of Maternal Labor Supply

description: We investigate the role of cultural norms in shaping women’s labor supply decisions after childbirth. Specifically, we are interested in the interplay between childhood socialization and adulthood environment. To that end, we leverage the setting of the German reunification when East Germany’s gender egalitarian culture induced by socialism and West Germany’s more traditional culture were brought together. We find that East German gender norms are persistent whereas West German ones are not. West German mothers adjust their behavior to that of their East German peers not only when immersed in East German environment but even after returning to the West.<br><br>This repository contains the code to generate the findings in the article.
description: Main data: Random sample of 50 percent of all women with German citizenship who were born between 1946 and 1994 and who ever held a job covered by the German social security system after 1975.<br><br>SOEP: Population of private households residing within the current boundaries of the Federal Republic of Germany.<br><br>European Values Study: Persons 18 years or older who are resident within private households. .
DOI: 10.3886/e197802v1
title: Code for: The Long-Term Effects of Career Guidance in High School and Student Financial Aid: Evidence from a Randomized Experiment

description: This is the code accompanying the article "The Long-Term Effects of Career Guidance in High School and Student Financial Aid: Evidence from a Randomized Experiment." The paper studies the effects of a randomized control trial in which Canadian high school students were randomly invited to participate in a career guidance program during high school and/or made eligiblef or extra financial aid conditional on college enrollment. I use administrative records to examine the effects of the interventions on college enrollment, graduation, and income up to age 29. The guidance intervention increased students four-year college enrollment and graduation rates and had positive effects on individuals’ income in adulthood. The financial aid intervention had a significantly lower impact on individuals’ income in adulthood despite also increasing college enrollment.
DOI: 10.3886/e197964v1
title: Data and Code for: Childcare, labor supply, and business development: Experimental evidence from Uganda

description: We randomly offered a childcare subsidy, an equivalent cash grant, or both to mothers of three-to-five-year-old children. The childcare subsidy substantially increased labor supply and earnings of single mothers, highlighting the importance of time constraints for them. Among couples, childcare did not affect mothers’ labor market outcomes but instead increased fathers’ salaried employment. At the household level, childcare led to higher income, consumption and improved child development. Cash grants positively affected mothers’ labor supply and income irrespective of the household structure, suggesting the general importance of credit constraints for women’s business development.
description: Mothers and households of three-to-five-year-old children in 9 districts across Uganda. Smallest Geographic Unit: village
DOI: 10.5258/soton/d3433
title: Dataset for the paper 'THz-TDS: extracting complex conductivity of two-dimensional materials via neural networks trained on synthetic and experimental data'

description: Dataset for paper titled: "THz-TDS: extracting complex conductivity of two-dimensional materials via neural networks trained on synthetic and experimental data" Published in Optics Express
Training and validation data used for 4 networks:
 - Large synthetically trained network using 2e5 training sets 
Comparison networks for different training sets
 - Small synthetic network 1600 data sets 
 - Experimental network 800 data sets
 - Hybrid trained network with 1600 datasets (800 experimental sets, 800 synthetic sets)
DOI: 10.5281/zenodo.13259679
title: Human head models and populational framework for simulating brain stimulations: part 1

description: We share an organized computational model data collection for noninvasive brain stimulation (NIBS) modeling. This dataset includes a subset of the collection's 100 preprocessed, quality-assured, realistic head models based on imaging data from the Human Connectome Project (HCP) s1200 release (Van Essen et al., 2012). We provide verified finite-element meshes, underlying anatomical images, tissue segmentations, standard space co-registrations, quality metrics, and lead-field matrices. We suggest individual tissue conductivity values for each head model from a range of biologically plausible values (McCann et al., 2019). Additionally, we provide straightforward computer code for several use cases of the current dataset. 

 





McCann, H., Pisano, G., & Beltrachini, L. (2019). Variation in Reported Human Head Tissue Electrical Conductivity Values. Brain Topography, 32(5), 825–858. https://doi.org/10.1007/s10548-019-00710-2




Van Essen, D. C., Ugurbil, K., Auerbach, E., Barch, D., Behrens, T. E. J., Bucholz, R., Chang, A., Chen, L., Corbetta, M., Curtiss, S. W., Della Penna, S., Feinberg, D., Glasser, M. F., Harel, N., Heath, A. C., Larson-Prior, L., Marcus, D., Michalareas, G., Moeller, S., … WU-Minn HCP Consortium. (2012). The Human Connectome Project: A data acquisition perspective. NeuroImage, 62(4), 2222–2231. https://doi.org/10.1016/j.neuroimage.2012.02.018



 

This dataset is split into 6 parts, you are currently on part 1. All parts are linked below:

Dataset_1: https://zenodo.org/records/13259679

Dataset_2: https://zenodo.org/records/13259747

Dataset_3: https://zenodo.org/records/13259943

Dataset_4: https://zenodo.org/records/13260068

Dataset_5: https://zenodo.org/records/13259599

Dataset_6: https://zenodo.org/records/13260208
DOI: 10.5281/zenodo.13259943
title: Human head models and populational framework for simulating brain stimulations: part 3

description: We share an organized computational model data collection for noninvasive brain stimulation (NIBS) modeling. This dataset includes a subset of the collection's 100 preprocessed, quality-assured, realistic head models based on imaging data from the Human Connectome Project (HCP) s1200 release (Van Essen et al., 2012). We provide verified finite-element meshes, underlying anatomical images, tissue segmentations, standard space co-registrations, quality metrics, and lead-field matrices. We suggest individual tissue conductivity values for each head model from a range of biologically plausible values (McCann et al., 2019). Additionally, we provide straightforward computer code for several use cases of the current dataset. 

 





McCann, H., Pisano, G., & Beltrachini, L. (2019). Variation in Reported Human Head Tissue Electrical Conductivity Values. Brain Topography, 32(5), 825–858. https://doi.org/10.1007/s10548-019-00710-2




Van Essen, D. C., Ugurbil, K., Auerbach, E., Barch, D., Behrens, T. E. J., Bucholz, R., Chang, A., Chen, L., Corbetta, M., Curtiss, S. W., Della Penna, S., Feinberg, D., Glasser, M. F., Harel, N., Heath, A. C., Larson-Prior, L., Marcus, D., Michalareas, G., Moeller, S., … WU-Minn HCP Consortium. (2012). The Human Connectome Project: A data acquisition perspective. NeuroImage, 62(4), 2222–2231. https://doi.org/10.1016/j.neuroimage.2012.02.018



 

This dataset is split into 6 parts, you are currently on part 3. All parts are linked below:

Dataset_1: https://zenodo.org/records/13259679

Dataset_2: https://zenodo.org/records/13259747

Dataset_3: https://zenodo.org/records/13259943

Dataset_4: https://zenodo.org/records/13260068

Dataset_5: https://zenodo.org/records/13259599

Dataset_6: https://zenodo.org/records/13260208
DOI: 10.5281/zenodo.13260208
title: Human head models and populational framework for simulating brain stimulations: part 6

description: We share an organized computational model data collection for noninvasive brain stimulation (NIBS) modeling. This dataset includes a subset of the collection's 100 preprocessed, quality-assured, realistic head models based on imaging data from the Human Connectome Project (HCP) s1200 release (Van Essen et al., 2012). We provide verified finite-element meshes, underlying anatomical images, tissue segmentations, standard space co-registrations, quality metrics, and lead-field matrices. We suggest individual tissue conductivity values for each head model from a range of biologically plausible values (McCann et al., 2019). Additionally, we provide straightforward computer code for several use cases of the current dataset. 

 





McCann, H., Pisano, G., & Beltrachini, L. (2019). Variation in Reported Human Head Tissue Electrical Conductivity Values. Brain Topography, 32(5), 825–858. https://doi.org/10.1007/s10548-019-00710-2




Van Essen, D. C., Ugurbil, K., Auerbach, E., Barch, D., Behrens, T. E. J., Bucholz, R., Chang, A., Chen, L., Corbetta, M., Curtiss, S. W., Della Penna, S., Feinberg, D., Glasser, M. F., Harel, N., Heath, A. C., Larson-Prior, L., Marcus, D., Michalareas, G., Moeller, S., … WU-Minn HCP Consortium. (2012). The Human Connectome Project: A data acquisition perspective. NeuroImage, 62(4), 2222–2231. https://doi.org/10.1016/j.neuroimage.2012.02.018



 

This dataset is split into 6 parts, you are currently on part 6. All parts are linked below:

Dataset_1: https://zenodo.org/records/13259679

Dataset_2: https://zenodo.org/records/13259747

Dataset_3: https://zenodo.org/records/13259943

Dataset_4: https://zenodo.org/records/13260068

Dataset_5: https://zenodo.org/records/13259599

Dataset_6: https://zenodo.org/records/13260208
DOI: 10.5281/zenodo.13756825
title: Measurement report: The variation properties of aerosol hygroscopic growth related to chemical composition during new particle formation days in a coastal city of southeast China

description: The aerosol scattering hygroscopic growth factor (f(RH)), along with conventional air pollutants and meteorological parameters were simultaneously observed from February to April 2022 in Xiamen, a coastal city of southeast China.
DOI: 10.5281/zenodo.14184379
title: AlphaFold Structures for: A wheat tandem kinase activates an NLR to trigger immunity

description: AlphaFold Predictions used for analysis in "A wheat tandem kinase activates an NLR to trigger immunity".
DOI: 10.5281/zenodo.14576897
title: Moored CTD measurements in the Southern Adriatic Sea at mooring site BB and FF, June 2020 - March 2022

description: This data set comprises 6 files in NetCDF format, containing observational data from two mooring sites, designated as BB and FF, located in the Southern Adriatic Sea. The data covers the period from June 2020 to March 2022. The stand-alone moorings are equipped with Conductivity-Temperature-Depth (CTD) systems that measure biogeochemical properties within the last 100 meters of the water column. These moorings have been configured and maintained for continuous long-term monitoring. As of 2021, the moorings have been integrated into the Southern Adriatic Submarine Observatory of the EMSO-ERIC European Consortium and remain operational. The metadata associated with this dataset comply with EMSO metadata specifications (available at: https://github.com/emso-eric/emso-metadata-specifications/blob/develop/EMSO_metadata.md). The data management plan is detailed in the document titled "Southern Adriatic BB and FF Mooring Data Management Plan for EMSO-ERIC" which can be accessed at https://doi.org/10.5281/zenodo.10412751. The moorings are supported by a grant from Istituto Nazionale di Geofisica e Vulcanologia within the framework of the Joint Research Unit EMSO Italia.  This funding is part of the resources allocated by the Italian Ministry of University and Research for international activities related to the European Research Infrastructure EMSO, as well as a grant from the Ufficio Programmazione e Grant Office of CNR-Italy (CNR-UPGO). This version maintains clarity and precision while adhering to scientific conventions.
DOI: 10.5281/zenodo.1460596
title: Dataset And Code Of Nemo-Pisces-Apecosm

description: This repository makes available the model output as well as the code used in the manuscript entitled "Evaluating the potential impacts of the diurnal vertical migration by marine organisms on marine biogeochemistry" by Aumont et al. Additional files are required to run the model that can be obtained from the official NEMO website or from Olivier Aumont. The output files are in netcdf formats and the variables are documented as metadata in the files. Any supplementary informations can be obtained by contacting Olivier Aumont. Furthermore, the data files used in the figures are provided as ASCII files. data_migrant_pub.csv includes the proportion of migratory organisms and active_flux.txt corresponds to the ratio of active flux over passive flux.
DOI: 10.5281/zenodo.14750279
title: eDNAjoint: an R package for interpreting paired or semi-paired environmental DNA and traditional survey data in a Bayesian framework
DOI: 10.5281/zenodo.14763826
title: Supporting data for manuscript "What does the impurity variability at the microscale represent in ice cores? Insights from a conceptual approach"

description: This dataset comprises the experimental data that is discussed in the manuscript "What does the impurity variability at the microscale represent in ice cores? Insights from a conceptual approach" submitted to The Cryosphere. These data were collected using the cryo laser ablation inductively coupled plasma mass spectrometry setup at Ca’Foscari University of Venice. Each csv file contains the variation in the sodium intensity on the surface of the sample denoted before the underscore in each file's title. Files that end with 'profile' are 1D line profiles, while those that end with 'map' are 2D maps, with all measurements conducted with a 40 micron laser spot and therefore 40 micron resolution.
DOI: 10.5281/zenodo.5908005
title: Aphidinae comparative genomics resource

description: Here we provide early access to 18 new genome assemblies, including 8 assembled to chromosome-scale, for aphids from the subfamily Aphidinae. For consistency and to aid comparative analysis, all genomes have been annotated using the same repeat masking and RNA-seq-based gene prediction pipeline. Using this pipeline we also provide new annotations for three previously published genome assemblies. The genome assemblies and annotations are made freely available without restriction, we only request that this Zenodo resource is cited when using the data. Raw sequence data upload to NCBI is underway and full details of all accessions will be given in an updated version of this resource. Manuscripts are in preparation describing the individual genome assemblies in detail and larger comparative genome analyses and we will update this resource with additional citation information as papers are published. Full details of all genome assemblies and annotations included in this release are given in the attached "Data_Description.pdf" document. <strong>Aphid species included in this release (bold type = chromosome-scale assembly):</strong> <em><strong>Aphis fabae</strong><br> Aphis glycines </em>(updated annotation)<br> <em><strong>Aphis gossypii</strong><br> Aphis thalictri<br> Aphis rumicis<br> Brachycaudus cardui<br> Brachycaudus helichrysi<br> Brachycaudus klugkisti<br> <strong>Brevicoryne brassicae</strong><br> Diuraphis noxia<br> <strong>Macrosiphum albifrons</strong><br> Metopolophium dirhodum<br> Myzus cerasi </em>(updated annotation)<br> <em>Myzus ligustri<br> Myzus lythri<br> Myzus varians<br> Pentalonia nigronervosa </em>(updated annotation)<br> <em><strong>Phorodon humuli</strong><br> <strong>Rhopalosiphum padi<br> Sitobion avenae<br> Sitobion miscanthi</strong></em>
DOI: 10.5281/zenodo.7503986
title: Supplementary Data for "Internal gonopod reconstruction in an amber-preserved millipede from the Cretaceous: Laeviglyphiulus patrickmuelleri n. gen., n. sp. (Diplopoda, Spirostreptida, Cambalopsidae)"

description: This dataset contains the Supplementary Data for

Rühr, P.T. & Wesener, T. (xxx): Internal gonopod reconstruction in an amber-preserved millipede from the Cretaceous: Laeviglyphiulus patrickmuelleri n. gen., n. sp. (Diplopoda, Spirostreptida, Cambalopsidae). XXX XXX(xxx): xxx-xxx. doi: xxx.



μCT-Scanner: SKYSCAN 1272 (Brucker microCT, Kontich, Belgium) with Bruker Control Software 1.1.7

Reconstruction: Bruker NRecon v.1.7.3.1

Rotation and Cropping: Bruker DataViewer v.1.5.6.2

Resolution: 1.3 µm/pixel

The enhancement of local contrast (CLAHE) was done using Stefan Fischer's ImageJ macro:



http://stefischer.de/2019/06/12/apply-clahe-filter-on-a-stack-in-fiji/
DOI: 10.5517/cc1jky56
title: CCDC 1417418: Experimental Crystal Structure Determination

description: Related Article: Tanaji T. Talele, Frank R. Fronczek|2015|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.28503419
title: Supplementary Material for: Streptococcus pyogenes activates human platelets via streptolysin S-mediated calcium ion influx

description: Introduction: Streptococcus pyogenes (group A streptococcus, GAS) is an exclusively human pathogen. It causes a wide spectrum of diseases, ranging from mild infections such as pharyngitis to severe life-threatening conditions such as streptococcal toxic shock syndrome (STSS). Thrombocytopenia is a common feature of STSS and is associated with severe outcome. GAS produce a plethora of virulence factors, including streptolysin S (SLS), which has lytic as well as immuno-modulatory properties. However, its role in platelet activation remains unclear.
Methods: Washed human platelets were infected with GAS wild-type and SLS-deficient mutant (ΔsagA) strains. Platelet activation was assessed by measuring degranulation (CD62P expression). The role of calcium influx and the involvement of purinergic type 2 receptors (P2R) in platelet activation by GAS were assessed using chemical antagonists and calcium chelators.
Results: GAS activate human platelets via SLS-mediated calcium influx, marked by increased surface expression of CD62P. IVIG treatment improved platelet viability in wild-type infections but failed to prevent SLS-mediated activation. Blocking of P2 receptors via suramin or NF449 as well as the use of calcium chelators reduced SLS-mediated platelet activation.
Conclusion: This study identified SLS as an M-protein and consequently serotype-independent activator of human platelets. While IVIG partially improved platelet viability in GAS infections, its inability to prevent excessive platelet activation underscores the need for additional treatment options in severe GAS infections.