cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/7ef1a57302ce17901adea578f7291499
title: Sediment and nutrient deposition and plant-soil phosphorus interactions associated with Hurricane Irma (2017) in mangroves of the Florida Coastal Everglades (FCE LTER), Florida

description: We quantified how Hurricane Irma influenced soil nutrient pools, vertical accretion, and plant phosphorus (P) uptake after its passage across the Florida Coastal Everglades in September 2017. Mangrove leaf litter data from three years (2008, 2014, 2018) were selected for each site at Shark River estuary to identify species-specific foliar P responses post-Wilma’s impact in 2005 and immediate post-Irma’s impact in 2017. We also monitored porewater SRP concentrations in the Shark River mangrove sites to evaluate the effect of Hurricane Irma on soil chemistry. The data in this data package were used in the following paper: Castañeda-Moya, E., V.H. Rivera-Monroy, R.M. Chambers, X. Zhao, L. Lamb-Wotton, A. Gorsky, E.E. Gaiser, T.G. Troxler, J.S. Kominoski, and M. Hiatt. 2020. Hurricanes fertilize mangrove forests in the Gulf of Mexico (Florida Everglades, USA). PNAS. In Press.
DOI: 10.17632/4tkhdx4jjx.2
title: DPFSP with due dates

description: This dataset is the extension of Naderi and Ruiz (2010) benchmark set for distributed permutation flowshop scheduling problem (DPFSP) with due dates. It can be utilized for DPFSP with total tardiness criterion.
DOI: 10.17632/5cw4fcc296.1
title: Dielctric functions calculated within LDA+U RPA framework using GPAW code

description: LDA+U approach allows to estimate dielectric functions of d-metals with high precision. The python script (*.py file) provides an example of calculation. Calculated dielectric functions are also uploaded as *.dat files. The *.cif files are the crystallographic data obtained from COD required to reproduce the calculations.
DOI: 10.17632/n3ywbm3y2t.1
title: Estimating ground-level PM2.5 using micro-satellite images by a convolutional neural network and random forest approach
DOI: 10.17632/n3ywbm3y2t.2
title: Estimating ground-level PM2.5 using micro-satellite images by a convolutional neural network and random forest approach
DOI: 10.17632/ct84dx5f5v.1
title: PBWS Questions for Survey and Semi-structured interviews

description: PBWS Questions for Survey and Semi-structured interviews
DOI: 10.17632/dmvkkh7gb2.3
title: Diversity and Structural Variability of Bacterial Microbial Communities in Rhizocompartments of Desert Leguminous Plants

description: By assessing diversity variations of bacterial communities under different rhizocompartment types (i.e., roots, rhizosphere soil, root zone soil, and inter-shrub bulk soil), we explore the structural variability of bacterial communities in different root microenvironments under desert leguminous plant shrubs. Results will enable the influence of niche differentiation of plant roots and root-soil on the structural stability of bacterial communities under three desert leguminous plant shrubs to be examined. High-throughput 16S rRNA genome sequencing was used to characterize diversity and structural differences of bacterial microbes in the rhizocompartments of three xeric leguminous plants.
DOI: 10.17632/dmvkkh7gb2.4
title: Diversity and Structural Variability of Bacterial Microbial Communities in Rhizocompartments of Desert Leguminous Plants

description: By assessing diversity variations of bacterial communities under different rhizocompartment types (i.e., roots, rhizosphere soil, root zone soil, and inter-shrub bulk soil), we explore the structural variability of bacterial communities in different root microenvironments under desert leguminous plant shrubs. Results will enable the influence of niche differentiation of plant roots and root-soil on the structural stability of bacterial communities under three desert leguminous plant shrubs to be examined. High-throughput 16S rRNA genome sequencing was used to characterize diversity and structural differences of bacterial microbes in the rhizocompartments of three xeric leguminous plants.
DOI: 10.17632/fv36z7hrz4.1
title: Neave and Zobel. Personality of dairy goats affects competitive feeding behaviour at different feeder heights - data sets and SAS code.

description: Raw data for competitive feeding behaviour and behavioural responses during personality tests of dairy goats provided different feed bunk heights.
DOI: 10.21227/k10x-hv88
title: Supplementary materials of the paper titled "WILDetect: An intelligent platform to perform bird censuses automatically in maritime ecosystem"

description: Supplementary materials of the paper titled "WILDetect: An intelligent platform to perform birdcensuses automatically in maritime ecosystem"
DOI: 10.5286/isis.e.rb2010523
title: Domain Size and Purity in the active Layers of Vacuum deposited Organic Solar Cells

description: Organic photovoltaics (OPVs) offer a low-cost and environmentally friendly solution to the global energy transition given their scalable vacuum- or solution-based production processes and abundant inexpensive raw materials. Furthermore, their properties are highly tuneable due to wide range of possible organic molecules. Efficient OPVs consist of a photovoltaic active bulk hetero-junction (BHJ), i.e. a mix of donor molecules (D) and acceptor molecules (A). Their efficient operation relies on a particular microstructure in the BHJ, not too finely mixed, not to much phase separated, to reach high efficiencies. This microstructure depends on many factors, from molecular structure to processing. In this proposal, we plan to use the capabilities of ISIS to investigate how the microstructure forms and how we can influence it such that we can improve the efficiency of OPV further.
DOI: 10.5286/isis.e.rb2010523-1
title: Domain Size and Purity in the active Layers of Vacuum deposited Organic Solar Cells

description: Organic photovoltaics (OPVs) offer a low-cost and environmentally friendly solution to the global energy transition given their scalable vacuum- or solution-based production processes and abundant inexpensive raw materials. Furthermore, their properties are highly tuneable due to wide range of possible organic molecules. Efficient OPVs consist of a photovoltaic active bulk hetero-junction (BHJ), i.e. a mix of donor molecules (D) and acceptor molecules (A). Their efficient operation relies on a particular microstructure in the BHJ, not too finely mixed, not to much phase separated, to reach high efficiencies. This microstructure depends on many factors, from molecular structure to processing. In this proposal, we plan to use the capabilities of ISIS to investigate how the microstructure forms and how we can influence it such that we can improve the efficiency of OPV further.
DOI: 10.17632/ybpczvr8nw.2
title: Supplementary Tables I, II and III (Hu JZ, Billings SD, Yan D, Fernandez AP. Histological Comparison of TNF-α Inhibitor-Induced Psoriasis and Psoriasis Vulgaris. J Am Acad Dermatol 2020)

description: Table I - Histologic Characteristics of TNFI-Psoriasis based on Inciting TNFI Table I- Adjusted Residual Analysis for Acanthosis Table III- Histologic Characteristics of TNFI-Psoriasis Patients based on Response to Topical Treatment
DOI: 10.6073/pasta/5d98d20fe5038479cb06b014a3bc3a52
title: PBB03 Belowground Plot Experiment: Belowground plot experiment: biomass and nutrient content of Roots

description: To address the potential interactive effects of fire, aboveground biomass removal, and nutrient amendments on above- and belowground responses, a long-term field experiment was initiated in 1986 as part of the Konza Prairie Long-Term Ecological Research (LTER) program. The general goals of this experiment are: 1) to document both short- and long-term responses of plants and soils to fire, aboveground biomass removal (a surrogate for grazing in these small plots), and nutrient amendments (additions of N and/or P); and 2) to provide a better understanding of the mechanisms underlying tallgrass prairie responses to fire, aboveground biomass removal and nutrient enrichment. Standing crops of live and dead grass roots(0.1 sq. m2 x 20cm deep samples) are taken in late summer periodically from 64 belowground plots. N and P content are determined on live and dead grass roots. N and P concentrations for forb roots are available for some plots in some years.
DOI: 10.17632/g7msxkcg55.2
title: Russian Bank Data: Reasons of Bank Closure

description: For every closed Russian bank I collect its closure reasons. I divide these reasons into categories and report them in the form of tags. The data come from online sources. The dataset is further described in a Data in Brief article with the same title.
DOI: 10.17632/gkg6wjp844.1
title: Build instructions and design files for 'An affordable and miniature ice coring drill for rapid acquisition of small iceberg samples'

description: This dataset provides all the design files necessary to replicate the iceberg coring drill. Please refer to the manuscript published in HardwareX, as well as the instructions below. The 3D printed parts are printed in nylon using selective laser sintering (SLS). SLS 3D printing is not required, however, and 3D printed parts can also be printed using more traditional 3D printers and filaments (e.g., PLA, PETG, or ABS). The design files include .STL and .STEP files for the 3D printed and machined parts, respectively. There are no metal alloy requirements for the machined parts. The 3D printed parts were constructed using SLS nylon, though they can also be constructed using PLA, PETG, and/or ABS, and the metal parts are machined using aluminium, stainless steel, spring steel, and knife steel, as indicated in the bill of materials table.
DOI: 10.17632/gz75x2pzr7.1
title: German Flight Ticket Prices

description: The data set was generated by web scraping and includes the ticket prices on 84 german connections over a period of 6 months. a total of 63,000 prices and connections are included in the data set. the present data set shows the structure and content as an example. If you are interested in the complete data set, please contact me.
DOI: 10.17632/hp3xftsrfx.2
title: Data For: Home health care routing and scheduling problem with multiple time windows and multiple synchronized services

description: The test instances have been generated randomly using benchmark instances from Mankowska et al(2014). Four sets of instances are generated: • Single Service and Single Time Window (SSSTW); • Single Service and Multiple Time Windows (SSMTW); • Multiple Services and Single Time Window (MSSTW); • Multiple Services and Multiple Time Windows (MSMTW).
DOI: 10.18112/openneuro.ds002508.v1.0.0
title: Auditory Visual Attention Shift
DOI: 10.25345/c5sd62
title: MassIVE MSV000084888 - Four Medium components applied Human gut microbiota metabolites data
title: Medium components altered the human gut metabolome significantly. Four different nutrients were tested and the metabolic profile of gut microbiota has been identified significantly different among the tested groups.
DOI: 10.17632/fxmn7p6fb4.1
title: Data for: Combination of numerical modelling and field measurments reveals strong regional control of slope on soil thickness and chemical weathering in subtropical Brazil

description: This data repository contains 3 main files: 1) Excel tables with: - Input and results of the synthetic model runs (Table S3) - Input and results of model applied to sampling locations (Table S4) - Soil profile description for each sampled location 2) Map with the coordinates of the sampling locations (.gpx and .shp format) 3) Text file containing the spectra of the scanned regional samples in the Mid- Infrared region (MIR). Spectra are given as absorbance and already corrected for possible drift by dividing by the background samples
DOI: 10.17632/h57dw54drx.1
title: Data for "Interaction between carbon partitioning and carbide nucleation inside austenite during a bainitic type transformation." Part 2
DOI: 10.17632/8nghtrdn4j.1
title: Data for "Interaction between carbon partitioning and carbide nucleation inside austenite during a bainitic type transformation." Part 1
DOI: 10.17632/gpsvsb563v.1
title: Neural network models to predict ulcerative colitis activity using standard clinico-biological parameters

description: R scripts for predicting ulcerative colitis endoscopic activity through standard clinico-biological parameters using three neural network models are found in the files provided. First binary model to predict active/inactive endoscopic disease using seven categorical and 13 continuous input variables is built and tested in UCDiseaseActivity_1stNNModel.R script. Console outputs for this script are shown in UCDiseaseActivity_1stNNModel_ConsoleOutput.txt. Second binary model to predict active/inactive endoscopic disease using 12 biological input variables is built and tested in UCDiseaseActivity_2ndNNModel.R script. Console outputs for this script are shown in UCDiseaseActivity_2ndNNModel_ConsoleOutput.txt. The multiclass model to predict Mayo endoscopic score using seven categorical and 13 continuous input variables is built and tested in UCDiseaseActivity_3rdNNModel.R script. Console outputs for this script are shown in UCDiseaseActivity_3rdNNModel_ConsoleOutput.txt.
DOI: 10.17632/85gy8ct4yn.1
title: 2019 Thames River (Canada) Cyanobacterial Bloom

description: In late September, 2019 a cyanobacterial bloom was observed in the lower reaches of the Thames River, a 273 km priority tributary of the Lake Erie watershed, as identified in Annex 4 of the Great Lakes Water Quality Agreement. The river flows into Lake St. Clair in southwestern Ontario with land use in the watershed dominated by row crop agriculture. This dataset includes biological and physico-chemical data acquired while sampling during before, and during the bloom.
DOI: 10.17632/vb86gjzvxk.1
title: Anonymized abstracts of publications in Economics for 18 years

description: Anonymized abstracts of publications in Economics for 18 years (1999-2017), cited in Scopus.
DOI: 10.3886/e117502
title: The Employment Effects of the Social Security Earnings Test

description: We investigate the impact of the Social Security Annual Earnings Test (AET) on the employment decisions of older Americans. The AET reduces Social Security benefits by one dollar for every two dollars earned above the exempt amount. Using a differences-in-differences design, we find that the employment rate of those predicted to become subject to the AET decreases substantially relative to those not predicted to become subject to it. The point estimates suggest that the AET reduces the employment rate of Americans aged 63-64 by at least 1.2 percentage points.
DOI: 10.3886/e117502v1
title: The Employment Effects of the Social Security Earnings Test

description: We investigate the impact of the Social Security Annual Earnings Test (AET) on the employment decisions of older Americans. The AET reduces Social Security benefits by one dollar for every two dollars earned above the exempt amount. Using a differences-in-differences design, we find that the employment rate of those predicted to become subject to the AET decreases substantially relative to those not predicted to become subject to it. The point estimates suggest that the AET reduces the employment rate of Americans aged 63-64 by at least 1.2 percentage points.
DOI: 10.17632/3r7388bhz7.1
title: Data for: Impact of salt retention on true batch reverse osmosis energy consumption: experiments and model validation

description: This dataset contains measurements from true batch RO experiments as well as the code use for data analysis. For more info, please see the accompanying paper.
DOI: 10.7910/dvn/5xyhjd/mbokio
title: Labussière and Vink 2020 - Data construction.pdf

description: Synthesis for the data construction of the using dataset (6_final_addvar.dta)
DOI: 10.7910/dvn/5xyhjd/vs0lrv
title: Labussière and Vink 2020 - Codebook of variables.pdf

description: Codebook of the variables for the using dataset (6_final_addvar.dta)
DOI: 10.5281/zenodo.3634028
title: SVXplorer: three-tier approach to identification of structural variants via sequential recombination of discordant cluster signatures

description: This repository contains the bgzipped variants calls in VCF format for CHM1, NA12878 and AJ trio dataset that are used in the SVXplorer manuscript. The names of the files contain the name of the sample (CHM1/NA12878/HG002/HG003/HG004), the name of the method (SVXplorer/DELLY/LUMPY/TIDDIT/TARDIS/MANTA) used to call the variants. There are three separate files for the DELLY calls which have the deletions, duplications and the inversion calls made by DELLY for each of the samples. For NA12878, there are two sets of calls, one for each of the libraries (ERR194147/SRR505885)
DOI: 10.25345/c5d68b
title: MassIVE MSV000084892 - Mass spectrometry-based proteomic characterization of cutaneous melanoma ectosomes reveals the presence of cancer-related molecules
title: Cutaneous melanoma (CM) is an aggressive type of skin cancer for which effective biomarkers are still needed. Due to the development of protocols for their successful isolation, protein content of extracellular vesicles (EVs) (including ectosomes and exosomes) became increasingly investigated in terms of its functional role in CM and as a source of novel biomarkers. The data concerning the proteome of CM-derived EVs is, however, very limited. The present study used shotgun nanoLC-MS/MS approach to profile protein content of ectosomes from primary (WM115 and WM793) and metastatic (WM266-4 and WM1205Lu) CM cell lines. Also, cancer-promoting effect exerted by CM ectosomes on recipient cells was assessed in terms of cell proliferation (Alamar Blue assay) and migratory properties (wound healing assay). A total of 1507 unique proteins were identified, with many of them involved in cancer cell proliferation, migration, escape from apoptosis, epithelial-mesenchymal transition and angiogenesis. Isolated ectosomes significantly increased proliferation and motility of recipient cells, most likely due to ectosomal transfer of different cancer-promoting molecules. Taken together, these results confirm the significant role of ectosomes in several biological processes leading to CM development and progression, and might be used as a starting point for further studies exploring their diagnostic and prognostic potential.
DOI: 10.5281/zenodo.3634027
title: SVXplorer: three-tier approach to identification of structural variants via sequential recombination of discordant cluster signatures

description: This repository contains the bgzipped variants calls in VCF format for CHM1, NA12878 and AJ trio dataset that are used in the SVXplorer manuscript. The names of the files contain the name of the sample (CHM1/NA12878/HG002/HG003/HG004), the name of the method (SVXplorer/DELLY/LUMPY/TIDDIT/TARDIS/MANTA) used to call the variants. There are three separate files for the DELLY calls which have the deletions, duplications and the inversion calls made by DELLY for each of the samples. For NA12878, there are two sets of calls, one for each of the libraries (ERR194147/SRR505885)
DOI: 10.5281/zenodo.3635062
title: A-ERT and ground temperature data- 2010- Deception Island/Antarctica

description: Climate induced warming of permafrost soils is a global phenomenon, with regional and site-specific variations, which are not fully understood. In this context, a 2D automated electrical resistivity tomography (A-ERT) system was installed for the first time in Antarctica at Deception Island, associated to the existing Crater Lake site of the Circumpolar Active Layer Monitoring Network (CALM-S). This set-up aims to I) monitor subsurface freezing and thawing processes on a daily and seasonal basis and to map the spatial and temporal variability of thaw depth, and to II) study the impact of short-lived extreme meteorological events on active layer dynamics. In addition, the feasibility of installing and running autonomous ERT monitoring stations in remote and extreme environments such as Antarctica was evaluated for the first time. Measurements were repeated at 4-hour intervals during a full year, enabling the detection of seasonal trends, as well as short-lived resistivity changes reflecting individual meteorological events. The latter is important to distinguish between (1) long-term climatic trends and (2) the impact of anomalous seasons on the ground thermal regime.<br> The A-ERT.txt file contains all ERT surveys which were performed using Wenner electrode configuration. 20 copper plates, which are connected by buried cables to the active boxes, with an electrode spacing of 0.5 m were used in this experiment. This setup yields 56 individual data points for each monitoring data set at six data levels. All data were saved in the Res2Dinv format.<br> The temperature. xlsx file contains air and ground temperatures data during the experiment period. The Air temperature was measured at 160 cm above the surface and ground temperatures in the shallow borehole S3,3 were measured with ibutton-sensors at depths 2.5, 5, 10, 20, 40, 80 and 160 cm.
DOI: 10.5281/zenodo.3635063
title: A-ERT and ground temperature data- 2010- Deception Island/Antarctica

description: Climate induced warming of permafrost soils is a global phenomenon, with regional and site-specific variations, which are not fully understood. In this context, a 2D automated electrical resistivity tomography (A-ERT) system was installed for the first time in Antarctica at Deception Island, associated to the existing Crater Lake site of the Circumpolar Active Layer Monitoring Network (CALM-S). This set-up aims to I) monitor subsurface freezing and thawing processes on a daily and seasonal basis and to map the spatial and temporal variability of thaw depth, and to II) study the impact of short-lived extreme meteorological events on active layer dynamics. In addition, the feasibility of installing and running autonomous ERT monitoring stations in remote and extreme environments such as Antarctica was evaluated for the first time. Measurements were repeated at 4-hour intervals during a full year, enabling the detection of seasonal trends, as well as short-lived resistivity changes reflecting individual meteorological events. The latter is important to distinguish between (1) long-term climatic trends and (2) the impact of anomalous seasons on the ground thermal regime.<br> The A-ERT.txt file contains all ERT surveys which were performed using Wenner electrode configuration. 20 copper plates, which are connected by buried cables to the active boxes, with an electrode spacing of 0.5 m were used in this experiment. This setup yields 56 individual data points for each monitoring data set at six data levels. All data were saved in the Res2Dinv format.<br> The temperature. xlsx file contains air and ground temperatures data during the experiment period. The Air temperature was measured at 160 cm above the surface and ground temperatures in the shallow borehole S3,3 were measured with ibutton-sensors at depths 2.5, 5, 10, 20, 40, 80 and 160 cm.
DOI: 10.6073/pasta/1be621ce275d0a3950e6dfb50093cb65
title: PEB01 Aboveground Net Primary Productivity of Tallgrass Prairie Based on Accumulated Plant Biomass in Grazing Exclsoures on Bison-Grazed Watersheds

description: Data set contains estimates of end-of-season standing crop biomass (grams per square meter) of live graminoids, forbs, woody plants, and previous year's dead vegetation in grazing exclosures. Date from exclosures is used to determine long-term effects of bison grazing on aboveground net primary productivity.
DOI: 10.5281/zenodo.3634877
title: CEA weights and sensitivities for Emilia-Romagna Region Case Study

description: CEA Weights and Sensitivities for Emilia-Romagna Region Case Study
DOI: 10.5281/zenodo.3634878
title: CEA weights and sensitivities for Emilia-Romagna Region Case Study

description: CEA Weights and Sensitivities for Emilia-Romagna Region Case Study