cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.23642/usn.19387469.v1
title: input data for standardcurves to R-script: "LOD calculator"

description: Environmental DNA (eDNA) is an increasingly used non-invasive and cost-effective method for species detections in surveillance studies. The myxozoan endoparasite <i>Tetracapsuloides bryosalmonae</i> is the causative agent of proliferative kidney disease (PKD) in salmonid fish. PKD is a potential lethal disease of freshwater salmonids when water temperatures exceed 12-14<sup>o</sup>C for prolonged periods, and periodically high mortality and decline in farmed and wild salmonid populations in Europe and North America have been reported in the last decades. The aim of this study was to use eDNA as a method to detect <i>Tetracapsuloides bryosalmonae</i> from large, deep, dimictic Norwegian lakes. Such habitats are expected to become increasingly important for cold-water salmonids as climate warms. The samples were collected from five lakes in southeastern Norway, and parasite DNA was detected by qPCR. The limit of detection (LOD), the target DNA concentration needed to give a positive result in 9 of 10 reactions, was determined. eDNA from T<i>. bryosalmonae </i>was detected above the LOD-level in four of the five lakes surveyed. When including sub-LOD positive samples, results indicated presence of <i>T. bryosalmonae</i> in all five lakes. These findings corresponded with the detection of <i>T. bryosalmonae</i> DNA in salmonid-kidneys in four of the lakes in a previous survey. The detection of parasites from eDNA varied between years and stations within the same lake, revealing a changing and apparently stochastic spatial distribution of parasite DNA from year to year. Even with positive detections of <i>T. bryosalmonae</i> by eDNA, this method will not be able to reveal dynamics between the different parasite hosts or detect different susceptibility between salmonid species, as could be indicated from analyses of fish tissue. Strategies for eDNA sampling in deep, dimictic lakes are discussed.
DOI: 10.23642/usn.19387469.v2
title: Input data for standardcurves to R-script: "LOD calculator"

description: Article Abstract - Related PublicationEnvironmental DNA (eDNA) is an increasingly used non-invasive and cost-effective method for species detections in surveillance studies. The myxozoan endoparasite <i>Tetracapsuloides bryosalmonae</i> is the causative agent of proliferative kidney disease (PKD) in salmonid fish. PKD is a potential lethal disease of freshwater salmonids when water temperatures exceed 12-14<sup>o</sup>C for prolonged periods, and periodically high mortality and decline in farmed and wild salmonid populations in Europe and North America have been reported in the last decades. The aim of this study was to use eDNA as a method to detect <i>Tetracapsuloides bryosalmonae</i> from large, deep, dimictic Norwegian lakes. Such habitats are expected to become increasingly important for cold-water salmonids as climate warms. The samples were collected from five lakes in southeastern Norway, and parasite DNA was detected by qPCR. The limit of detection (LOD), the target DNA concentration needed to give a positive result in 9 of 10 reactions, was determined. eDNA from T<i>. bryosalmonae </i>was detected above the LOD-level in four of the five lakes surveyed. When including sub-LOD positive samples, results indicated presence of <i>T. bryosalmonae</i> in all five lakes. These findings corresponded with the detection of <i>T. bryosalmonae</i> DNA in salmonid-kidneys in four of the lakes in a previous survey. The detection of parasites from eDNA varied between years and stations within the same lake, revealing a changing and apparently stochastic spatial distribution of parasite DNA from year to year. Even with positive detections of <i>T. bryosalmonae</i> by eDNA, this method will not be able to reveal dynamics between the different parasite hosts or detect different susceptibility between salmonid species, as could be indicated from analyses of fish tissue. Strategies for eDNA sampling in deep, dimictic lakes are discussed.
DOI: 10.23642/usn.19387472.v1
title: Replication data for eDNA in deep lakes

description: Environmental DNA (eDNA) is an increasingly used non-invasive and cost-effective method for species detections in surveillance studies. The myxozoan endoparasite <i>Tetracapsuloides bryosalmonae</i> is the causative agent of proliferative kidney disease (PKD) in salmonid fish. PKD is a potential lethal disease of freshwater salmonids when water temperatures exceed 12-14<sup>o</sup>C for prolonged periods, and periodically high mortality and decline in farmed and wild salmonid populations in Europe and North America have been reported in the last decades. The aim of this study was to use eDNA as a method to detect <i>Tetracapsuloides bryosalmonae</i> from large, deep, dimictic Norwegian lakes. Such habitats are expected to become increasingly important for cold-water salmonids as climate warms. The samples were collected from five lakes in southeastern Norway, and parasite DNA was detected by qPCR. The limit of detection (LOD), the target DNA concentration needed to give a positive result in 9 of 10 reactions, was determined. eDNA from T<i>. bryosalmonae </i>was detected above the LOD-level in four of the five lakes surveyed. When including sub-LOD positive samples, results indicated presence of <i>T. bryosalmonae</i> in all five lakes. These findings corresponded with the detection of <i>T. bryosalmonae</i> DNA in salmonid-kidneys in four of the lakes in a previous survey. The detection of parasites from eDNA varied between years and stations within the same lake, revealing a changing and apparently stochastic spatial distribution of parasite DNA from year to year. Even with positive detections of <i>T. bryosalmonae</i> by eDNA, this method will not be able to reveal dynamics between the different parasite hosts or detect different susceptibility between salmonid species, as could be indicated from analyses of fish tissue. Strategies for eDNA sampling in deep, dimictic lakes are discussed.
DOI: 10.3535/122-7tg-5r6
title: Sagittaria sagittifolia L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.23642/usn.19387472.v2
title: Replication data for: Use of environmental DNA to detect the myxozoan endoparasite <i>Tetracapsuloides bryosalmonae</i> in large Norwegian lakes

description: Article Abstract - Related PublicationEnvironmental DNA (eDNA) is an increasingly used non-invasive and cost-effective method for species detections in surveillance studies. The myxozoan endoparasite <i>Tetracapsuloides bryosalmonae</i> is the causative agent of proliferative kidney disease (PKD) in salmonid fish. PKD is a potential lethal disease of freshwater salmonids when water temperatures exceed 12-14<sup>o</sup>C for prolonged periods, and periodically high mortality and decline in farmed and wild salmonid populations in Europe and North America have been reported in the last decades. The aim of this study was to use eDNA as a method to detect <i>Tetracapsuloides bryosalmonae</i> from large, deep, dimictic Norwegian lakes. Such habitats are expected to become increasingly important for cold-water salmonids as climate warms. The samples were collected from five lakes in southeastern Norway, and parasite DNA was detected by qPCR. The limit of detection (LOD), the target DNA concentration needed to give a positive result in 9 of 10 reactions, was determined. eDNA from T<i>. bryosalmonae </i>was detected above the LOD-level in four of the five lakes surveyed. When including sub-LOD positive samples, results indicated presence of <i>T. bryosalmonae</i> in all five lakes. These findings corresponded with the detection of <i>T. bryosalmonae</i> DNA in salmonid-kidneys in four of the lakes in a previous survey. The detection of parasites from eDNA varied between years and stations within the same lake, revealing a changing and apparently stochastic spatial distribution of parasite DNA from year to year. Even with positive detections of <i>T. bryosalmonae</i> by eDNA, this method will not be able to reveal dynamics between the different parasite hosts or detect different susceptibility between salmonid species, as could be indicated from analyses of fish tissue. Strategies for eDNA sampling in deep, dimictic lakes are discussed.
DOI: 10.3535/122-cxw-57t
title: Brachypodium pinnatum (L.) P.Beauv.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/122-gak-l2m
title: Vicia sylvatica L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.23642/usn.19425311.v1
title: Replication data for: Hazel dormouse in managed woodland select for young, dense, and species-rich tree stands

description: Datasets used in Mortensen et al. 2022, "Hazel dormouse in managed woodland select for young, dense, and species-rich tree stands", Forest Ecology and Management, https://doi.org/10.1016/j.foreco.2022.120348. In the paper, we studied the habitat selection in hazel dormouse at two spatial scales and investigated differences in individuals' habitat selection within home ranges. Abstract In <sub>fragmented forest</sub> landscapes, population persistence of <sub>arboreal species</sub> with limited dispersal ability may strongly depend on the quality of the remaining <sub>forest habitat</sub>. Using the hazel dormouse (<em>Muscardinus avellanarius</em>) as a model species, we studied habitat selection at two spatial scales (home range and within home range) in intensely managed woodlands at its northern distributional range in Denmark. We modelled selection at home range level as the conditional probability of occupancy of 588 nest boxes and nest tubes in 15 managed forests relative to habitat variables measured within 25 m radius. Habitat selection within home ranges was modelled by comparing habitat variables within 3 m radius of triangulated locations by 19 radio-tracked individuals (12 M, 7 F) when active at night with regularly distributed available locations within their home ranges. At both spatial scales, hazel dormice strongly selected sites with high abundance-weighted species richness and high vegetation density of <sub>woody plants</sub>. On home range level, they furthermore selected for young tree vegetation, while they within home ranges selected for intermediate aged tree stands (maximum trunk circumference: 1.50 m). The predicted probability of presence in nest boxes or nest tubes varied from less than 1% to more than 99% as a combined function of three habitat variables. From May to October, selection for abundance-weighted species richness of woody plants of radio-tagged individuals decreased with date and body weight, suggesting that a diverse food base is particularly important early in their season of activity and for lean and small (growing) individuals. Selection for dense vegetation increased with body mass and mean available vegetation density within home ranges, indicating behavioural variability related to changes in energy expenditure and need for safety among individuals. The study demonstrates that the hazel dormouse has specific habitat requirements related to food and safety that can be accommodated with relatively simple means in managed forests.
DOI: 10.3535/122-h47-dl5
title: Saxifraga cernua L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/122-p2m-y8k
title: Ranunculus flammula subsp. flammula

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.23642/usn.19926224.v1
title: Search strategies for a systematic review article on joint attention intervention in autism spectrum disorders

description: This dataset consists of search documentation for a systematic review article on joint attention intervention in autism spectrum disorders. Contains search strategies for databases Medline (Ovid), Embase (Ovid), PsycINFO (Ovid), Eric (Ebsco), Cochrane, Cinahl Complete, Scopus, danish bibliotek.dk swedish Libris and Swepub
DOI: 10.23642/usn.20043662.v1
title: Replication data for: "Which simulator to use for maritime education and training? - An assessment using multi-criteria decision-making methods"

description: Description of data: The data files include preliminary survey responses from simulator experts to be used in combination with data scripts from MATLAB using JAGS for Best-Worst Method (Mohammadi & Rezaei, 2020). In this study, we investigated different types of maritime simulators and assessed their suitability of use based on 13 identified criteria. <br> <br> Abstract: Simulators have been an integral part of maritime education and training (MET). It has been implemented in different levels of seafarer training as mandated by both local and international regulations. State-of-the-art simulator technologies have evolved over the years making it possible to train in different modalities, i.e., in full-mission, desktop-based, cloud-based and virtual reality (VR) simulators. However, selecting an ideal type of simulator for the varying maritime training needs is a daunting task for the instructors, decision-makers in the institutions. This study adopts a hybrid multi-criteria decision-making approach to identify the most appropriate type of simulator based on training needs. The Bayesian Best-Worst Method is utilized to rank the 13 identified criteria that influence use of simulators in MET. The criteria weights from the ranking are then used to rank and assess the four types of simulators using the Preference Ranking Organization Method for Enrichment Evaluation (PROMETHEE). The results reveal that the full-mission simulators are the most preferable solution followed by VR simulators, cloud-based and desktop simulators considering the aggregated weight of identified criteria. In addition, regulatory compliance was identified as the most significant criterion while the cost of simulators remains the least significant consideration in the context of maritime simulator training. <br> <br>
DOI: 10.3535/122-vj4-xje
title: Comarum palustre L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/123-gtw-d0z
title: Elodea canadensis Michx.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.23642/usn.20192714.v1
title: Search strategies for a review article on learning and competence for the unforeseen and innovation

description: Search strategies for a review article on learning and competence for the unforeseen and innovation are described. Contains strategies for the databases PsycInfo, ERIC and Web of Science. See the readme.txt for further documentation.
DOI: 10.23642/usn.20525676.v1
title: Search strategies for a review article on work engagement in professional nursing in long-term care settings

description: Search strategies for a review article on work engagement in professional nursing in long-term care facilities are described. Contains strategies for the databases PsycInfo, Academic Search Premier, Cinahl, Medline and Scopus. See the readme.txt for further documentation.
DOI: 10.3535/123-hf8-5p7
title: Rumex obtusifolius subsp. transiens (Simonk.) Rech. fil.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.23642/usn.20525676.v2
title: Search strategies for a review article on work engagement in professional nursing in long-term care settings

description: Search strategies for a review article on work engagement in professional nursing in long-term care facilities are described. Contains strategies for the databases PsycInfo, Academic Search Premier, Cinahl, Medline and Scopus. See the readme.txt for further documentation.
DOI: 10.23642/usn.21629552.v1
title: Search strategies for a scoping review article "Leadership in home care in Scandinavia"

description: This dataset consists of the search documentation for a scoping review article on nursing leadership in home care in Scandinavia (2010-2023). Contains strategies for the databases CINAHL, Medline, EMBASE, Scopus, SveMed+, Scandinavian library catalogues and research archives.
DOI: 10.23642/usn.21629552.v2
title: Search strategies for a scoping review article "Leadership in home care in Scandinavia"

description: This dataset consists of the search documentation for a scoping review article on nursing leadership in home care in Scandinavia (2010-2023). Contains strategies for the databases CINAHL, Medline, EMBASE, Scopus, SveMed+, Scandinavian library catalogues and research archives.
DOI: 10.23642/usn.21724193.v1
title: Search strategies for a scoping review article on learning and usefulness in evaluation of disaster exercises

description: Search strategies for a scoping review article on learning and usefulness in evaluation of disaster exercises are described. Contains strategies for the databases Medline, PsycInfo, Academic Search Premier, Business Source Elite, ERIC, Web of Science and Scopus. See the readme.txt for further documentation.
DOI: 10.3535/123-v1m-7zz
title: Typha latifolia L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.23642/usn.21769406.v1
title: Search strategies for the umbrella review article "Best practice for organizing nursing education in rural areas"

description: This dataset consistes of the serach documentation for an umbrella review article on nursing education in rural areas. It contains strategies for the databases Medline, Embase, Cinahl, ERIC, Web of Science, SveMed+, Libris, Swepub, bibliotek.dk and Oria.
DOI: 10.23642/usn.21904242.v1
title: Replication data for: Rod and cone dark adaptation in congenital aniridia and its association with retinal structure

description: Abstract <strong>Purpose:</strong> To characterize the association between dark-adapted rod and cone sensitivity and retinal structure in <em>PAX6-</em>related aniridia. <strong>Methods:</strong> Dark-adaptation curves were measured after 5 minutes exposure to bright light with red (625 nm) and green (527 nm) 2°circular light stimuli presented at ≈20 degrees temporal retinal eccentricity in 27 participants with aniridia (9 males; 11–66 years) and 38 age-matched healthy controls. A two-stage exponential model was fitted to each participant’s responses to determine their cone and rod thresholds over time. The thicknesses of macular inner and outer retinal layers were obtained from optical coherence tomography images in 20 aniridia patients and the 38 healthy controls. Aniridia associated keratopathy (AAK) grade (0­–3) and lens opacities were quantified by clinical examination of the anterior segment. <strong>Results:</strong> The rod-cone break time was similar between aniridia patients and healthy controls. Dark-adapted cone and the rod thresholds were higher in aniridia compared with healthy controls. In aniridia, foveal outer retinal layer thickness correlated with both final cone- and rod-thresholds. A multiple regression model indicated that foveal outer retinal layer thickness and age were the main explanatory variables to predict both final cone- and rod-thresholds in aniridia when the AAK grade was 2 or less. <strong>Conclusions:</strong> The results show that both rod and cone-related function are affected in <em>PAX6-</em>related aniridia and implies that retinal anatomical and physiological changes extend beyond the area commonly studied in this condition: the central macula.
DOI: 10.3535/123-wj2-eh5
title: Vicia tetrasperma (L.) Schreb.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/124-0f7-j5h
title: Potentilla crantzii (Crantz) Beck ex Fritsch

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.23642/usn.21909591.v1
title: Replication data for: Comparing ocular biometry and autorefraction measurements from the Myopia Master with the IOLMaster 700 and the Huvitz HRK-8000A autorefractor

description: Ocular biometry and autorefraction measured during cycloplegia with the three instruments: Myopia Master, IOLMaster 700 and Huvitz HRK-8000A. <br> Abstract Purpose: To compare axial length (AL) and corneal radius (CR) measured with the OCULUS Myopia Master and the Zeiss IOLMaster 700, and cycloplegic refractive error measured with the Myopia Master and the Huvitz Auto Ref/Keratometer (HRK-8000A). Methods: The study included both eyes of 74 participants (16 males), with a mean age of 22.8 (3.7) years. Eyes were measured, during cycloplegia, with the three instruments: Myopia Master (AL, CR and refractive error), IOLMaster 700 (AL and CR) and HRK-8000A (CR and refractive error). Bland-Altman plots with mixed effects 95% limits of agreement (LoA) and corresponding 95% confidence intervals were used to assess the agreement in ocular biometry between the Myopia Master and the IOLMaster 700, and in refractive error between the Myopia Master and the HRK-8000A. Results: The analysis included 139 eyes, of which 52 were myopic (spherical equivalent refractive error, SER ≤ -0.50 D), 32 emmetropic and 55 hyperopic (SER ≥ 0.50 D). The 95% LoA for AL between the Myopia Master and IOLMaster 700 was -0.097–0.089 mm. There was no mean difference in AL [mean (SD) = -0.004 (0.047) mm, p = 0.34]. There was a significant difference in mean CR, with that measured with the Myopia Master being flatter than that measured with the IOLMaster 700 [0.035 (0.028) mm, p &lt; 0.001]. The 95% LoA for CR was -0.02–0.09 mm. Compared with HRK-8000A, the Myopia Master measured a significantly more negative SER [-0.19 (0.33) D, p &lt; 0.001], with 95% LoA of -0.86–0.46 D. Conclusion: The limits agreement in measurements of SER, CR, and AL when comparing the Myopia Master with HRK-8000A and the IOLMaster 700 were wider than deemed acceptable for making direct comparisons. This indicates that the instruments cannot be used interchangeably in clinical practice or research. <br> <br>
DOI: 10.3535/124-0rd-g03
title: Sparganium glomeratum (Laest. ex Beurl.) Beurl.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/124-0y8-bnk
title: Salix glauca L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.23642/usn.21939563.v1
title: The REMOTE Panel: A four wave longitudinal dataset of experiences with remote working arrangements during 2022

description: The REMOTE Panel is a four wave longitudinal dataset collected from over 3500 Norwegian employees over the course of 2022 to capture their experiences with remote and hybrid work arrangements.