cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive19947.20221219.7.1
title: Sporocytophaga myxococcoides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19948.20220920.7
title: Sporocytophaga myxococcoides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19948.20221219.7.1
title: Sporocytophaga myxococcoides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19949.20220920.7
title: Sporocytophaga myxococcoides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19949.20221219.7.1
title: Sporocytophaga myxococcoides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19950.20220920.7
title: Sporocytophaga myxococcoides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19950.20221219.7.1
title: Sporocytophaga myxococcoides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19951.20220920.7
title: Archangium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19951.20221219.7.1
title: Archangium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19952.20220920.7
title: Archangium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19952.20221219.7.1
title: Archangium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19953.20220920.7
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19953.20221219.7.1
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19954.20220920.7
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19954.20221219.7.1
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19955.20220920.7
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19955.20221219.7.1
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19956.20220920.7
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19956.20221219.7.1
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19957.20220920.7
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19957.20221219.7.1
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19958.20220920.7
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19958.20221219.7.1
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19959.20220920.7
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19959.20221219.7.1
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.34740/kaggle/dsv/4758387
title: COVID Vaccination in World (updated daily)
DOI: 10.13145/bacdive19960.20220920.7
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19960.20221219.7.1
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19961.20220920.7
title: Polyangium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19961.20221219.7.1
title: Polyangium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19962.20220920.7
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19962.20221219.7.1
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19963.20220920.7
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19963.20221219.7.1
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19964.20220920.7
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19964.20221219.7.1
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19965.20220920.7
title: Myxococcus fulvus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19965.20221219.7.1
title: Myxococcus fulvus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19966.20220920.7
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19966.20221219.7.1
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive19967.20220920.7
title: Myxococcus fulvus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.4382264
title: Weightlessness Sessile Drop dataset

description: Data set for Weightlessness Sessile Drop.
DOI: 10.5281/zenodo.4382238
title: Arabidobsis ATR7 2020 RNAseq

description: Oxidative stress can lead to plant growth retardation, yield loss, and death. The <em>atr7</em> mutant of <em>Arabidopsis thaliana</em> exhibits pronounced tolerance to oxidative stress. Using positional cloning, confirmed by knockout and RNA interference (RNAi) lines, we identified the <em>atr7</em> mutation and revealed that <em>ATR7</em> is a previously uncharacterized gene with orthologs in other seed plants but with no homology to genes in lower plants, fungi or animals. Expression of <em>ATR7</em>-<em>GFP</em> fusion shows that ATR7 is a nuclear-localized protein. RNA-seq analysis reveals that transcript levels of genes encoding abiotic- and oxidative stress-related transcription factors (<em>DREB19, HSFA2, ZAT10</em>), chromatin remodelers (<em>CHR34</em>), and unknown or uncharacterized proteins (<em>AT5G59390, AT1G30170, AT1G21520</em>) are elevated in <em>atr7</em>. This indicates that <em>atr7</em> is primed for an upcoming oxidative stress via pathways involving genes of unknown functions. Collectively, the data reveal <em>ATR7</em> as a novel seed plants-specific nuclear regulator of oxidative stress response.
DOI: 10.5281/zenodo.4382237
title: Arabidobsis ATR7 2020 RNAseq

description: Oxidative stress can lead to plant growth retardation, yield loss, and death. The <em>atr7</em> mutant of <em>Arabidopsis thaliana</em> exhibits pronounced tolerance to oxidative stress. Using positional cloning, confirmed by knockout and RNA interference (RNAi) lines, we identified the <em>atr7</em> mutation and revealed that <em>ATR7</em> is a previously uncharacterized gene with orthologs in other seed plants but with no homology to genes in lower plants, fungi or animals. Expression of <em>ATR7</em>-<em>GFP</em> fusion shows that ATR7 is a nuclear-localized protein. RNA-seq analysis reveals that transcript levels of genes encoding abiotic- and oxidative stress-related transcription factors (<em>DREB19, HSFA2, ZAT10</em>), chromatin remodelers (<em>CHR34</em>), and unknown or uncharacterized proteins (<em>AT5G59390, AT1G30170, AT1G21520</em>) are elevated in <em>atr7</em>. This indicates that <em>atr7</em> is primed for an upcoming oxidative stress via pathways involving genes of unknown functions. Collectively, the data reveal <em>ATR7</em> as a novel seed plants-specific nuclear regulator of oxidative stress response.
DOI: 10.5281/zenodo.4382227
title: Arabidobsis Super50 2020 RNAseq

description: Abiotic stresses cause oxidative damage in plants. Here, we demonstrate that foliar application of an extract from the seaweed Ascophyllum nodosum, SuperFifty (SF), largely prevents paraquat (PQ)-induced oxidative stress in Arabidopsis thaliana. While PQ-stressed plants develop necrotic lesions, plants pre-treated with SF (i.e., primed plants) were unaffected by PQ. Transcriptome analysis revealed induction of reactive oxygen species (ROS) marker genes, genes involved in ROS-induced programmed cell death, and autophagy-related genes after PQ treatment. These changes did not occur in PQ-stressed plants primed with SF. In contrast, upregulation of several carbohydrate metabolism genes, growth, and hormone signaling as well as antioxidant-related genes were specific to SF-primed plants. Metabolomic analyses revealed accumulation of the stress-protective metabolite maltose and the tricarboxylic acid cycle intermediates fumarate and malate in SF-primed plants. Lipidome analysis indicated that those lipids associated with oxidative stress-induced cell death and chloroplast degradation, such as triacylglycerols (TAGs), declined upon SF priming. Our study demonstrated that SF confers tolerance to PQ-induced oxidative stress in A. thaliana, an effect achieved by modulating a range of processes at the transcriptomic, metabolic, and lipid levels.
DOI: 10.5281/zenodo.4382226
title: Arabidobsis Super50 2020 RNAseq

description: Abiotic stresses cause oxidative damage in plants. Here, we demonstrate that foliar application of an extract from the seaweed Ascophyllum nodosum, SuperFifty (SF), largely prevents paraquat (PQ)-induced oxidative stress in Arabidopsis thaliana. While PQ-stressed plants develop necrotic lesions, plants pre-treated with SF (i.e., primed plants) were unaffected by PQ. Transcriptome analysis revealed induction of reactive oxygen species (ROS) marker genes, genes involved in ROS-induced programmed cell death, and autophagy-related genes after PQ treatment. These changes did not occur in PQ-stressed plants primed with SF. In contrast, upregulation of several carbohydrate metabolism genes, growth, and hormone signaling as well as antioxidant-related genes were specific to SF-primed plants. Metabolomic analyses revealed accumulation of the stress-protective metabolite maltose and the tricarboxylic acid cycle intermediates fumarate and malate in SF-primed plants. Lipidome analysis indicated that those lipids associated with oxidative stress-induced cell death and chloroplast degradation, such as triacylglycerols (TAGs), declined upon SF priming. Our study demonstrated that SF confers tolerance to PQ-induced oxidative stress in A. thaliana, an effect achieved by modulating a range of processes at the transcriptomic, metabolic, and lipid levels.
DOI: 10.21227/n42c-sx97
title: Baseline

description: Baseline
DOI: 10.5281/zenodo.4140513
title: Differential ADAR editing landscapes in major depressive disorder and suicide.

description: Neuropsychiatric disorders including depression and suicide are becoming an increasing public health concern. The current COVID19 pandemic by contributing to the rising rates of both depression and suicide has only hastened our need for objective and reliable diagnostic biomarkers. These can aide clinicians in not only diagnosing, but also in development of treatment plans for depression and suicide. While differential gene expression analysis has highlighted the serotonin signaling cascadeamong other critical neurotransmitter pathways to underly the pathology of depression and suicide, the biological mechanisms remain elusive. Well studied adenosine deaminase action on RNA (ADAR) editing sites such as serotonin and glutamate receptors have been examined individually one at a time. Here we propose a novel approach to better understand molecular underpinnings of neuropsychiatric disorders. We take advantage of publically available RNA-seq datasets to map ADAR editing landscapes in a more global gene-centric view. We use a unique combination of Guttman scaling and random forest classification modeling to create, describe and compare ADAR editing profiles focusing on both temporal and biological sex differences. We use a subset of experimentally confirmed ADAR editing sites located in known protein coding regions, the excitome, to map ADAR editing profiles in Major Depressive Disorder (MDD) and suicide. Using Guttman scaling, we were able to describe significant changes in editing profiles across brain regions in males and females with respect to cause of death (COD) and MDD diagnosis. The temporal distribution of editing sites may provide insight into biological mechanisms under-pinning clinical symptoms associated with MDD and suicidal behavior. Additionally, we use random forest modeling including these differential profiles among other markers of global editing patterns in order to highlight potential biomarkers providing insight into changes in synaptic plasticity. Together these models identify potential prognostic, diagnostic and therapeutic biomarkers for MDD diagnosis and/or suicide.
DOI: 10.5281/zenodo.4140512
title: Differential ADAR editing landscapes in major depressive disorder and suicide.

description: Neuropsychiatric disorders including depression and suicide are becoming an increasing public health concern. The current COVID19 pandemic by contributing to the rising rates of both depression and suicide has only hastened our need for objective and reliable diagnostic biomarkers. These can aide clinicians in not only diagnosing, but also in development of treatment plans for depression and suicide. While differential gene expression analysis has highlighted the serotonin signaling cascadeamong other critical neurotransmitter pathways to underly the pathology of depression and suicide, the biological mechanisms remain elusive. Well studied adenosine deaminase action on RNA (ADAR) editing sites such as serotonin and glutamate receptors have been examined individually one at a time. Here we propose a novel approach to better understand molecular underpinnings of neuropsychiatric disorders. We take advantage of publically available RNA-seq datasets to map ADAR editing landscapes in a more global gene-centric view. We use a unique combination of Guttman scaling and random forest classification modeling to create, describe and compare ADAR editing profiles focusing on both temporal and biological sex differences. We use a subset of experimentally confirmed ADAR editing sites located in known protein coding regions, the excitome, to map ADAR editing profiles in Major Depressive Disorder (MDD) and suicide. Using Guttman scaling, we were able to describe significant changes in editing profiles across brain regions in males and females with respect to cause of death (COD) and MDD diagnosis. The temporal distribution of editing sites may provide insight into biological mechanisms under-pinning clinical symptoms associated with MDD and suicidal behavior. Additionally, we use random forest modeling including these differential profiles among other markers of global editing patterns in order to highlight potential biomarkers providing insight into changes in synaptic plasticity. Together these models identify potential prognostic, diagnostic and therapeutic biomarkers for MDD diagnosis and/or suicide.
DOI: 10.15468/3egdzq
title: The scorpions from the Mitaraka Massif in French Guiana (Scorpiones: Buthidae, Chactidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lourenço, Wilson R. (2018): The scorpions from the Mitaraka Massif in French Guiana (Scorpiones: Buthidae, Chactidae). Zoosystema 40 (14): 367-374, DOI: 10.5252/zoosystema2018v40a14
DOI: 10.5517/ccdc.csd.cc23jjz5
title: CCDC 1952317: Experimental Crystal Structure Determination

description: Related Article: Nuria Álvarez-Pazos, Jorge Bravo, Ana M. Graña, Soledad García-Fontán|2020|Polyhedron|176|114288|doi:10.1016/j.poly.2019.114288
DOI: 10.5517/ccdc.csd.cc247d3x
title: CCDC 1973308: Experimental Crystal Structure Determination

description: Related Article: Kmendashisha Wanniang, O. Risuklang Shangpliang, Ibakyntiew D. Marpna, Tyrchain Mitre Lipon, Badaker M. Laloo, Bekington Myrboh|2020|J.Org.Chem.|85|15652|doi:10.1021/acs.joc.0c02028
DOI: 10.5517/ccdc.csd.cc2555cx
title: CCDC 2000968: Experimental Crystal Structure Determination

description: Related Article: Zhiqiang Liu, Yudha P. Budiman, Yaming Tian, Alexandra Friedrich, Mingming Huang, Stephen A. Westcott, Udo Radius, Todd B. Marder|2020|Chem.-Eur.J.|26|17267|doi:10.1002/chem.202002888
DOI: 10.5517/ccdc.csd.cc2555fz
title: CCDC 2000970: Experimental Crystal Structure Determination

description: Related Article: Zhiqiang Liu, Yudha P. Budiman, Yaming Tian, Alexandra Friedrich, Mingming Huang, Stephen A. Westcott, Udo Radius, Todd B. Marder|2020|Chem.-Eur.J.|26|17267|doi:10.1002/chem.202002888
DOI: 10.5517/ccdc.csd.cc25lvj5
title: CCDC 2014117: Experimental Crystal Structure Determination

description: Related Article: Róbert Gyepes, Peter Schwendt, Jozef Tatiersky, Michal Sivák, Ján Šimunek, Silvia Pacigová, Lukáš Krivosudský|2020|Inorg.Chem.|59|17162|doi:10.1021/acs.inorgchem.0c02430
DOI: 10.5517/ccdc.csd.cc25nmbt
title: CCDC 2015816: Experimental Crystal Structure Determination

description: Related Article: Heiko Ruppert, Lutz Greb|2020|Organometallics|39|4340|doi:10.1021/acs.organomet.0c00473
DOI: 10.5517/ccdc.csd.cc25nmcv
title: CCDC 2015817: Experimental Crystal Structure Determination

description: Related Article: Heiko Ruppert, Lutz Greb|2020|Organometallics|39|4340|doi:10.1021/acs.organomet.0c00473
DOI: 10.5517/ccdc.csd.cc25nmdw
title: CCDC 2015818: Experimental Crystal Structure Determination

description: Related Article: Heiko Ruppert, Lutz Greb|2020|Organometallics|39|4340|doi:10.1021/acs.organomet.0c00473
DOI: 10.5517/ccdc.csd.cc25t1bd
title: CCDC 2020063: Experimental Crystal Structure Determination

description: Related Article: Jimin Han, Jongwon Kim, Jaehoo Lee, Younghun Kim, Sarah Yunmi Lee|2020|J.Org.Chem.|85|15476|doi:10.1021/acs.joc.0c02246
DOI: 10.15468/kzcqah
title: Brentidae Acratini du massif du Mitaraka, en Guyane: une synthèse des données (Insecta, Coleoptera, Curculionoidea)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mantilleri, Antoine (2018): Brentidae Acratini du massif du Mitaraka, en Guyane: une synthèse des données (Insecta, Coleoptera, Curculionoidea). Zoosystema 40 (15): 375-388, DOI: 10.5252/zoosystema2018v40a15
DOI: 10.5281/zenodo.4382343
title: Raw data for the paper on biological autoluminescence from yeast cells culture

description: raw data of the paper on biological autoluminescence from yeast cells culture
DOI: 10.5281/zenodo.4382342
title: Raw data for the paper on biological autoluminescence from yeast cells culture

description: raw data of the paper on biological autoluminescence from yeast cells culture
DOI: 10.5281/zenodo.4382271
title: Flexible metagenome analysis using the MGX framework -- Benchmark data

description: Synthetic benchmark metagenomes and annotations used to benchmark taxonomic classification approaches in https://doi.org/10.1186/s40168-018-0460-1
description: {"references": ["Jaenicke, S., Albaum, S., Blumenkamp, P. et al. Flexible metagenome analysis using the MGX framework. Microbiome 6, 76 (2018)."]}
DOI: 10.5281/zenodo.4382270
title: Flexible metagenome analysis using the MGX framework -- Benchmark data

description: Synthetic benchmark metagenomes and annotations used to benchmark taxonomic classification approaches in https://doi.org/10.1186/s40168-018-0460-1
description: {"references": ["Jaenicke, S., Albaum, S., Blumenkamp, P. et al. Flexible metagenome analysis using the MGX framework. Microbiome 6, 76 (2018)."]}