cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26698838.v1
title: Additional file 10 of Phenology and ecological role of aerobic anoxygenic phototrophs in freshwaters

description: Additional file 10: Supplementary file S1. Nucleotide pufM gene sequence of the database in fasta format. Supplementary file S2. ID of the pufM gene sequences from the database and their environment of origin. Supplementary file S3. File containing all the information from the amplicon sequence analysis. Reference ASVs (IDs and sequences), ASV table (ID and abundance on each sample) and Taxa (ID and taxonomic assignation of each ASV). Supplementary file S4. Primer coverage comparison of the most commonly used pufM gene primer pairs and the newly designed one with 0, 1, 2 and 3 mismatches (MM). Numbers represent the percentage of sequences from the pufM gene database covered for different phyla and classes. Supplementary file S5. Sample identification number (Sample name) and all the environmental and biological variables measured. Supplementary file S6. Draftsman plot correlation of the environmental and biological variables, samples removed due to lack of environmental variables, marginal and sequential test for DistLM for 3 years and 2 years (includes also nutrients). Supplementary file S7. Positive log fold change (lfc) values, standard error (SE) at genus and ASV levels for the spring and autumn AAP abundance peaks with the p- and q-values (p, q).
DOI: 10.6084/m9.figshare.25495282
title: Additional file 2 of Systematic immune cell dysregulation and molecular subtypes revealed by single-cell RNA-seq of subjects with type 1 diabetes

description: Additional file 2: Table S1. Clinical information of samples used for scRNA-seq. Table S2. Clinical information of samples used for FACS symphony. Table S3. Cell type-specific T1D DEGs. Table S4. Gene Ontology (GO) over-representaion results of T1D DEGs modules. Table S5. GSEA results of T1D DEGs across 13 immune cell types. Table S6. Filtered GSEA results (cell type-specific and top three GO terms in each cell types). Table S7. GO over-representaion results of T1D and SLE overlaping PBMC DEGs. Table S8. GO over-representaion results of overlaping T1D up-DEGs with prognostic expression signatures and transcriptome changes in T1D pancreas. Table S9. Cell type-specific T1D DARs. Table S10. List of antibodies used in this study.
DOI: 10.6084/m9.figshare.25495282.v1
title: Additional file 2 of Systematic immune cell dysregulation and molecular subtypes revealed by single-cell RNA-seq of subjects with type 1 diabetes

description: Additional file 2: Table S1. Clinical information of samples used for scRNA-seq. Table S2. Clinical information of samples used for FACS symphony. Table S3. Cell type-specific T1D DEGs. Table S4. Gene Ontology (GO) over-representaion results of T1D DEGs modules. Table S5. GSEA results of T1D DEGs across 13 immune cell types. Table S6. Filtered GSEA results (cell type-specific and top three GO terms in each cell types). Table S7. GO over-representaion results of T1D and SLE overlaping PBMC DEGs. Table S8. GO over-representaion results of overlaping T1D up-DEGs with prognostic expression signatures and transcriptome changes in T1D pancreas. Table S9. Cell type-specific T1D DARs. Table S10. List of antibodies used in this study.
DOI: 10.15468/dl.hjkxgw
title: Occurrence Download

description: A dataset containing 98964 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-180 -90, 180 -90, 180 90, -180 90, -180 -90))",
 "Depth is greater than or equal to 0m",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "TaxonKey is Cheloniidae",
 "CoordinateUncertaintyInMeters is less than 1e+05"
 ]
}

 The dataset includes 98964 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072886-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2526a5
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bullockus varai (Bullock, 1970)"
 ]
}

 The dataset includes 14 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079961-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7gq6er
title: Occurrence Download

description: A dataset containing 1534 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Viet Nam",
 "TaxonKey is Ericaceae"
 ]
}

 The dataset includes 1534 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071459-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vfd7hh
title: Occurrence Download

description: A dataset containing 10342 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-85.4199693999999994 40.1896287000000001, -85.4199693999999994 40.1919119000000009, -85.4199693999999994 40.1932818200000028, -85.4199693999999994 40.1953366999999986, -85.4199693999999994 40.1970491000000010, -85.4199693999999994 40.1984190200000029, -85.4199693999999994 40.2010446999999971, -85.4170044499999932 40.2010446999999971, -85.4148378499999978 40.2010446999999971, -85.4117590000000035 40.2010446999999971, -85.4090222500000067 40.2010446999999971, -85.4073117800000006 40.2010446999999971, -85.4045750199999958 40.2010446999999971, -85.4025224500000064 40.2010446999999971, -85.4004698899999966 40.2010446999999971, -85.3988734499999964 40.2010446999999971, -85.3965928199999951 40.2010446999999971, -85.3948823500000032 40.2010446999999971, -85.3930578399999973 40.2010446999999971, -85.3897508000000016 40.2010446999999971, -85.3897508000000016 40.1986473400000008, -85.3897508000000016 40.1967066200000005, -85.3897508000000016 40.1947659000000002, -85.3897508000000016 40.1924826999999993, -85.3897508000000016 40.1907702999999970, -85.3897508000000016 40.1896287000000001, -85.3924876800000021 40.1896287000000001, -85.3951104100000009 40.1896287000000001, -85.3983032900000012 40.1896287000000001, -85.4000137599999931 40.1896287000000001, -85.4021803600000027 40.1896287000000001, -85.4051451800000052 40.1896287000000001, -85.4073117800000006 40.1896287000000001, -85.4094783799999959 40.1896287000000001, -85.4123291599999988 40.1896287000000001, -85.4142676999999964 40.1896287000000001, -85.4168904200000014 40.1896287000000001, -85.4199693999999994 40.1896287000000001))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 10342 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090011-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ap2gz
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tamolanica tamolana Brancsik, 1897"
 ]
}

 The dataset includes 38 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089096-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mmav4a
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Eleocharis nudipes (Kunth) Palla"
 ]
}

 The dataset includes 47 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101935-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wmgxm8
title: Occurrence Download

description: A dataset containing 1160942 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((35.62496433333334 48.88410666666667, 35.62496433333334 65.37073733333334, 2.179608666666667 65.37073733333334, 2.179608666666667 48.88410666666667, 35.62496433333334 48.88410666666667))",
 "EventDate is 2021-11-01,2021-11-30"
 ]
}

 The dataset includes 1160942 records from 181 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014402-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.56dk2x
title: Occurrence Download

description: A dataset containing 494627 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Tyto alba (Scopoli, 1769)"
 ]
}

 The dataset includes 494627 records from 1331 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0109084-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.grnt99
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Madagascar",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Mantidactylus katae Scherz, Crottini, Hutter, Hildenbrand, Andreone, Fulgence, Köhler, Ndriantsoa, Ohler, Preick, Rakotoarison, Rancilhac, Raselimanana, Riemann, Rödel, Rosa, Streicher, Vieites, Köhler, Hofreiter, Glaw & Vences, 2022"
 ]
}

 The dataset includes 18 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008403-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e76jnw
title: Occurrence Download

description: A dataset containing 6322 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sison segetum L."
 ]
}

 The dataset includes 6322 records from 217 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071461-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ybohiu
title: Occurrence Download

description: A dataset containing 18513 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 {
 "or" : [
 "Month is May",
 "Month is June",
 "Month is July",
 "Month is August",
 "Month is April"
 ]
 },
 "Year 2010-2010",
 "DatasetKey is EOD – eBird Observation Dataset",
 "TaxonKey is Falco sparverius Linnaeus, 1758"
 ]
}

 The dataset includes 18513 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014991-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.83h7tu
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetKey is CSIC-Real Jardín Botánico-Anthos. Sistema de Información de las Plantas de España",
 "TaxonKey is Centaurea lagascana Graells"
 ]
}

 The dataset's 1 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015848-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tiqyuv
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Zambia",
 "TaxonKey is Aloe L."
 ]
}

 The dataset includes 83 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017143-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lkyfti
title: Occurrence Download

description: A dataset containing 24599 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 {
 "or" : [
 "Month is May",
 "Month is June",
 "Month is July",
 "Month is August",
 "Month is April"
 ]
 },
 "Year 2011-2011",
 "DatasetKey is EOD – eBird Observation Dataset",
 "TaxonKey is Falco sparverius Linnaeus, 1758"
 ]
}

 The dataset includes 24599 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014993-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4oqw75
title: Occurrence Download

description: A dataset containing 18624 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cenchrus ciliaris L."
 ]
}

 The dataset includes 18624 records from 261 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017143-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c7prvm
title: Occurrence Download

description: A dataset containing 13099 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Iguana iguana (Linnaeus, 1758)"
 ]
}

 The dataset includes 13099 records from 210 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042013-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.krodcr
title: Occurrence Download

description: A dataset containing 453 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thalurania watertonii (Bourcier, 1847)"
 ]
}

 The dataset includes 453 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014993-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fretig
title: Occurrence Download

description: A dataset containing 1644 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Boyeria irene (Fonscolombe, 1838)"
 ]
}

 The dataset includes 1644 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017144-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ghha4r
title: Occurrence Download

description: A dataset containing 772 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Living Specimen, Occurrence evidence)",
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Myrmecophagidae"
 ]
}

 The dataset includes 772 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0205038-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pfstrl
title: Occurrence Download

description: A dataset containing 69309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Vicia tetrasperma (L.) Schreb.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 69309 records from 346 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014994-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kk6cwd
title: Occurrence Download

description: A dataset containing 5412 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maculinea teleius (Bergstrasser, 1779)"
 ]
}

 The dataset includes 5412 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001734-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ls2hh2
title: Occurrence Download

description: A dataset containing 19185 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Carassius auratus (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 19185 records from 194 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017144-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v0emkr
title: Occurrence Download

description: A dataset containing 3567864 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Colombia"
 ]
}

 The dataset includes 3567864 records from 967 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014993-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/adje63
title: Morphology-based phylogeny of oval palm and flower beetles (Coleoptera: Mycteridae: Eurypinae), with descriptions of new genera and species from Australia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Hsiao, Yun, Pollock, Darren A. (2022): Morphology-based phylogeny of oval palm and flower beetles (Coleoptera: Mycteridae: Eurypinae), with descriptions of new genera and species from Australia. Zoological Journal of the Linnean Society 196: 677-703, DOI: 10.1093/zoolinnean/zlab122
DOI: 10.15468/ne2t4h
title: Order Dermoptera - Family Cynocephalidae

description: This dataset contains the digitized treatments in Plazi based on the original book chapter Wilson, Don E., Reeder, DeeAnn (2005): Order Dermoptera - Family Cynocephalidae. In: Mammal Species of the World: a Taxonomic and Geographic Reference (3 rd Edition), Volume 1. Baltimore: The Johns Hopkins University Press: 110, ISBN: 0-8018-8221-4, DOI: 10.5281/zenodo.7316519
DOI: 10.15468/hgddks
title: The species of the bee genus Centris Fabricius (Hymenoptera: Apidae) described by Giovanni Gribodo

description: This dataset contains the digitized treatments in Plazi based on the original journal article Vivallo, Felipe (2020): The species of the bee genus Centris Fabricius (Hymenoptera: Apidae) described by Giovanni Gribodo. Revista Chilena de Entomología (Rev. Chil. Entomol.) 46 (1): 51-59, DOI: 10.35249/rche.46.1.20.07, URL: http://dx.doi.org/10.35249/rche.46.1.20.07Abstract. In this paper the primary types of Centris bees described by the Italian entomologist Giovanni Gribodo were studied. The type specimens of C. citrotaeniata, C. deiopeia, C. denudans var. rubida, C. proserpina, C. quartinae, Anthophora plumigera, and A. virgo were analyzed, providing notes on their current status and depository. To stabilize the application of the name C. citrotaeniata it was designating a lectotype for the species. Notes and photographs of the primary types are also provided.
DOI: 10.15468/9vff8q
title: Taxonomic studies of the ground beetle subgenus Falcinebria Ledoux & Roux, 2005 (Coleoptera, Carabidae, Nebria) from the Japanese Alps (central Honshu), Shikoku, and Kyushu, Japan

description: This dataset contains the digitized treatments in Plazi based on the original journal article Sasakawa, Kôji (2025): Taxonomic studies of the ground beetle subgenus Falcinebria Ledoux & Roux, 2005 (Coleoptera, Carabidae, Nebria) from the Japanese Alps (central Honshu), Shikoku, and Kyushu, Japan. ZooKeys 1254: 131-148, DOI: 10.3897/zookeys.1254.157095AbstractNebria (Falcinebria) reflexa Bates and its relatives are among the most diverse groups of the genus in Japan, but their diversity has not yet been fully elucidated. In this study, specimens from three regions that had not been covered previously — the Japanese Alps (central Honshu), Shikoku, and Kyushu — were examined. Descriptions of Nebria dracocephala sp. nov. (type locality: Honshu, Mount Ryûtô-san) and Nebria elephanta sp. nov. (type locality: Shikoku, Mount Tsurugi-san), a redescription of Nebria hikosana Habu (type locality: Kyushu, Mount Hiko-san), and new distribution records for N. niohozana Bates (Honshu, Mount Teraji-yama), N. furcata Sasakawa (Honshu, Mount Kurai-yama), Nebria dichotoma Sasakawa (Honshu, Hiraya-tôge Pass), and N. hikosana (Kyushu, Mount Seburi-san) are presented. Species identification was based on the morphology of the male genital endophallus, a membranous inner sac everted from the aedeagus. For N. dracocephala, N. elephanta, and N. hikosana, the endophallus morphology exhibited several notable features — marked intraspecific variation in the size and shape of the surface structures, such as lobes in N. dracocephala, and significant morphological modifications of the gonopore protrusion in N. elephanta and N. hikosana. These findings, together with information on related species from previous studies, provide new insights into the processes of differentiation and morphological evolution of N. reflexa and related species. A checklist and updated key to all Japanese species of Nebria (Falcinebria) are provided.
DOI: 10.6084/m9.figshare.29818797
title: Clinical efficacy and safety evaluation of drug therapies for the treatment of progressive fibrotic-interstitial lung diseases (PF-ILDs): a network meta-analysis of randomized controlled trials

description: This network meta-analysis (NMA) of randomized controlled trials (RCTs) aimed to evaluate the efficacy and safety of pharmacotherapies for progressive fibrotic-interstitial lung diseases (PF-ILDs) to identify optimal treatments. We searched for RCTs on PF-ILD [idiopathic pulmonary fibrosis (IPF), connective tissue disease-ILD (CTD-ILD), chronic hypersensitivity pneumonitis (CHP), and pulmonary sarcoidosis] pharmacotherapies until 5 June 2025. NMA assessed efficacy [forced vital capacity, diffusing capacity of lungs for carbon monoxide, 6-minute-walk distance] and safety [serious adverse events (SAEs) and all-cause mortality] (PROSPERO: CRD42024554475). We included 65 studies (13,521 participants) for 48 drugs in IPF, 10 studies (1,508 participants) for eight drugs in CTD-ILD, four studies (259 participants) for three drugs in CHP, and nine studies (525 participants) for nine drugs in pulmonary sarcoidosis. In IPF, pirfenidone, nintedanib, and IFNγ-1b slowed lung function decline and reduced mortality. In CTD-ILD, pirfenidone, nintedanib, tocilizumab, and cyclophosphamide improved lung function and reduced mortality, with higher SAEs for nintedanib and cyclophosphamide. Pirfenidone and prednisolone benefited CHP, while budesonide improved lung function in pulmonary sarcoidosis. Anti-fibrotic drugs – Pirfenidone and nintedanib effectively slow disease progression and reduce mortality in PF-ILDs. Emerging therapies like IFNγ-1b warrant further research, underscoring the need for large, high-quality RCTs.