cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5285/60106614-ef32-43e2-e053-6c86abc04167
title: Observation consistent warming projections for 2081-2100 from the WASP model for the RCP4.5 scenario, and the corresponding earth system properties.

description: This dataset contains model data from a large ensemble of 32,615 simulations of an efficient Earth system model; the Warming Acidification and Sea-level Projector, WASP. The results were generated following historic forcing from year 1765 to 2005, followed by the RCP4.5 scenario until year 2100.  The WASP model was run 100 million times with different combinations of input parameters using a Monte Carlo approach. Each of these intitial 100 million simulations was tested against observational reconstructions of historic warming, heat uptake and carbon uptake. The 32,615 simulations that matched the historic observations were extracted and form this dataset. The data provides projected global mean surface warming above preindustrial during the period 2081-2100, the simulated historic constraints used to extract the simulations (warming, ocean heat uptake and carbon fluxes over set time intervals), and the corresponding Earth system properties for each of the 32,615 historic consistent WASP model simulations. This dataset was collected as part of a joint Natural Environment Research Council (NERC) and UK Government Department of Business, Energy and Industrial Strategy (BEIS) grant reference NE/P01495X/1 - ADJUST1.5, and a NERC standard grant reference NE/N009789/1 - Mechanistic controls of surface warming by ocean heat and carbon uptake.
DOI: 10.4225/25/5a4d783969e89
title: MODIS Derived Sea Surface Temperature dataset: Seasonal Means

description: The dataset measures the long-term seasonal means of the sea surface temperature (SST) of ocean surface waters. They are derived from MODIS (aqua) images using NASA's SeaDAS image processing software. The monthly SST images between July 2002 and December 2016 are used to calculate the means of the four austral seasons: winter (June, July, and August), spring (September, October and November), summer (December, January and February) and autumn (March, April and May). The extent of the dataset covers the entire Australian EEZ and surrounding waters (including the southern ocean). The unit of the dataset is Celsius degree.
DOI: 10.5281/zenodo.1135278
title: Theory Dataset For "Tunable Gamma-K Valley Populations In Trilayer Wse2"

description: Dataset for the theoretical analysis presented in the paper "Tunable Gamma-K Valley Populations in Trilayer WSe2". Details of the contents are described in README.md.
DOI: 10.5281/zenodo.1135279
title: Theory Dataset For "Tunable Gamma-K Valley Populations In Trilayer Wse2"

description: Dataset for the theoretical analysis presented in the paper "Tunable Gamma-K Valley Populations in Trilayer WSe2". Details of the contents are described in README.md.
DOI: 10.6073/pasta/9571446ac77f9ef60b33e607e4817e7d
title: Fish number, recap number, species, lengths, weights, sex and tissues sampled of fish captured in lakes near the Toolik Lake LTER site during the summer of 1987 (tagging data), Arctic LTER 1987.
DOI: 10.15468/ijdzkj
title: Three new species of the killifish genus Melanorivulus from the Rio Parana Basin, central Brazilian Cerrado (Cyprinodontiformes, Aplocheilidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Costa, Wilson J. E. M. (2018): Three new species of the killifish genus Melanorivulus from the Rio Parana Basin, central Brazilian Cerrado (Cyprinodontiformes, Aplocheilidae). Zoosystematics and Evolution 1: 17-27, DOI: http://dx.doi.org/10.3897/zse.94.21321, URL: http://dx.doi.org/10.3897/zse.94.21321
DOI: 10.5255/ukda-sn-8211-4
title: 1970 British Cohort Study: Ten-Year Follow-Up, 1980: Geographical Identifiers: Secure Access
DOI: 10.5255/ukda-sn-8212-4
title: 1970 British Cohort Study: Sixteen-Year Follow-Up, 1986: Geographical Identifiers: Secure Access
DOI: 10.5255/ukda-sn-8213-4
title: 1970 British Cohort Study: Twenty-Six-Year Follow-Up, 1996: Geographical Identifiers: Secure Access
DOI: 10.17632/dkdbb6gg6x.1
title: Data for: Energy Use Predictive Modeling using CBECS data: a Comparison of Machine Learning Algorithms for Commercial Office Buildings

description: Codebook and R codes
DOI: 10.4225/25/5a4d7a8b03a96
title: MODIS Derived Sea Surface Temperature dataset: Seasonal Variations

description: The dataset measures the long-term seasonal variations of the sea surface temperature (SST) of ocean surface waters. They are derived from MODIS (aqua) images using NASA's SeaDAS image processing software. The monthly SST images between July 2002 and December 2016 are used to calculate the standard deviations of the four austral seasons: winter (June, July, and August), spring (September, October and November), summer (December, January and February) and autumn (March, April and May). The extent of the dataset covers the entire Australian EEZ and surrounding waters (including the southern ocean). The unit of the dataset is Celsius degree.
DOI: 10.5255/ukda-sn-8220-3
title: National Child Development Study: Sweep 4, 1981: Geographical Identifiers: Secure Access
DOI: 10.7267/n9gf0rp1
title: Benthic Habitat Mapping: eCognition Rule Set
DOI: 10.5255/ukda-sn-8221-3
title: National Child Development Study: Sweep 5, 1991: Geographical Identifiers: Secure Access
DOI: 10.5255/ukda-sn-852946
title: Eye movements in risky choice, experimental data
DOI: 10.7487/2018.3.1.1099
title: Joanna Harris

description: D3 and D4 cal hel and fin monthly means from 1958 to 2016
DOI: 10.4225/25/5a4d5951881cb
title: MODIS Derived Primary Productivity: Overall Hotspots

description: The dataset indicates the long-term overall primary productivity hotspots of ocean surface waters. They are derived from MODIS (aqua) images using NASA's SeaDAS image processing software. The monthly chlorophyll a images between July 2002 and August 2014 are used to identify the overall primary productivity hotspots. The extent of the dataset covers the entire Australian EEZ and surrounding waters (including the southern ocean). The value (between 0 and 1.0) of the dataset represents the likelihood of the location being a primary productivity hotspot.
DOI: 10.6073/pasta/1ea708120a93634ef108fc8b5971cbed
title: Fish number, recap number, species, lengths, weights, sex and tissues sampled of fish captured in lakes near the Toolik Lake LTER site during the summer of 1986 (tagging data), Arctic LTER 1986.
DOI: 10.15454/1.514986781126987e12
title: Strength and barrier properties of MFC films - Table O2 permeability
DOI: 10.5255/ukda-sn-852947
title: Eye movements in strategic choice, experimental data
DOI: 10.17632/66fr4vfbdz.1
title: A Study of conformational dynamics of Cas9 governing DNA cleavage revealed by single molecule FRET. Yang et al.

description: A Study of conformational dynamics of Cas9 governing DNA cleavage revealed by single molecule FRET
DOI: 10.17632/wbk8hk87r2.1
title: MC4C: Locus-Specific Enhancer Hubs And Architectural Loop Collisions Uncovered From Single Allele DNA Topologies

description: Chromatin folding is increasingly recognized as a regulator of genomic processes such as gene activity. Chromosome conformation capture (3C) methods have been developed to unravel genome topology through the analysis of pair-wise chromatin contacts and have identified many genes and regulatory sequences that, in populations of cells, are engaged in multiple DNA interactions. However, pair-wise methods cannot discern whether contacts occur simultaneously or in competition on the individual chromosome. We present a novel 3C method, Multi-Contact 4C (MC-4C), that applies Nanopore sequencing to study multi-way DNA conformations of tens of thousands individual alleles for distinction between cooperative, random and competing interactions. MC-4C can uncover previously missed structures in sub-populations of cells. It reveals unanticipated cooperative clustering between regulatory chromatin loops, anchored by enhancers and gene promoters, and CTCF and cohesin-bound architectural loops. For example, we show that the constituents of the active -globin super-enhancer cooperatively form an enhancer hub that can host two genes at a time. We also find cooperative interactions between further dispersed regulatory sequences of the active proto-cadherin locus. When applied to CTCF-bound domain boundaries, we find evidence that chromatin loops can collide, a process that is negatively regulated by the cohesin release factor WAPL. Loop collision is further pronounced in WAPL knockout cells, suggestive of a “cohesin traffic jam”. In summary, single molecule multi-contact analysis methods can reveal how the myriad of regulatory sequences spatially coordinate their actions on individual chromosomes. Insight into these single allele higher-order topological features will facilitate interpreting the consequences of natural and induced genetic variation and help uncovering the mechanisms shaping our genome.
DOI: 10.17632/5r24wkw8wh.1
title: Bologna et al. Mol Cell

description: Raw_data pdf file contains the entire set of original blots used to mount the panels in all the figures.
DOI: 10.17632/6wzdgfnkxv.1
title: Serum corticosterone and glucocorticoid receptor (GR) immunoreactivity in the hippocampal CA1, 24 hours following restraint stress.

description: Sub mice demonstrated markedly elevated serum corticosterone levels in response to restraint stress (A), while PRS-exposed Sub Dom mice effectively recruit hippocampal GR to the CA1 in response to restraint (B). At the same time, GR immunoreactivity in the BLA and the PVN was not found to be significantly different between strains, nor to be altered 24 hours following restraint.
DOI: 10.17632/7m56nw5zx4.1
title: Prenatally stressed Submissive offspring develop long-term HPA axis dysregualtion.

description: Sub offspring of PRS pregnancies demonstrated elevated basal serum corticosterone levels (A), alongside reduced hippocampal GR expression (B), while MR expression was reduced among Sub PRS offspring, relative to Dom counterparts (C). GR DNA-binding factor 1 (GRLF1) expression was unchanged by PRS (D).
DOI: 10.17632/v2rfnr5vrr.1
title: Dose calculation

description: Drug doses calculation for each experimental week.
DOI: 10.17632/x45ywkdxv6.1
title: Prenatal Stress (PRS) exposure strengthened depressive- and anxiety-like behavior of Submissive (Sub) offspring

description: Sub PRS mice spent less time drinking sweetened milk when placed in the DSR test against their naïve counterparts (A), while Dom PRS mice display stable competition for food, in competition with Dom naïve (B). Sub PRS mice exhibited heightened immobility in the FST (C), relative to both Sub naïve and Dom PRS mice, without altered locomotion in the Open Field (D). In the EPM, open time: total time indexes of Sub PRS mice were significantly lower than those of Dom PRS (E), without changes in the proportion of mice’s entries to open arms (F).
DOI: 10.17632/4dwzvcdsv3.1
title: Facebook wall post processed data

description: his dataset contains user’s wall post activity information during 14 October 2004 to 21st January 2009. It contains 46951 users and their wall post activity.
DOI: 10.17632/66fr4vfbdz.2
title: A Study of conformational dynamics of Cas9 governing DNA cleavage revealed by single molecule FRET. Yang et al.

description: A Study of conformational dynamics of Cas9 governing DNA cleavage revealed by single molecule FRET
DOI: 10.17632/csm9vrmhzd.1
title: Arxiv HEP citation data set processed time as month

description: Arxiv-HePh data set contains 30500 number of papers and 347185 edges from January 1993 to April 2003.
DOI: 10.17632/s4pdm23fkd.1
title: Scalable Manufacturing of Immiscible Al-Bi Alloy by Self-Assembled Nanoparticles

description: Include: (1) Raw data of measured Bi phase size in Al-20Bi-1Cu-2vol.%TiC alloy under cooling rate of 10 K/s, 28 K/s, 50 K/s, 200 K/s and 400 K/s. (2) EDS line scan data along the interface of Al-Bi (3) HV microhardness data of pure Al-20Bi, Al-20Bi-1Cu-2vol.%TiC and cold rolled Al-20Bi-1Cu-2vol.%TiC (4) Tensile tests data of Al-20Bi-1Cu-2vol.%TiC and cold rolled Al-20Bi-1Cu-2vol.%TiC
DOI: 10.17632/k9xjcg2mdx.1
title: Evaluation result of PSSCRYPT

description: We measure the performance in six different categories according to each situation, including AES for large-sized binary encryption, a hash for message digest, an RSA asymmetric cipher for a digital signature, and the salt length of RSA-PSS.
DOI: 10.5255/ukda-sn-853008
title: Cooperation in small groups: The effect of group size
DOI: 10.7487/2018.3.1.1100
title: Nicola Woodley

description: cal hel and fin d3, PCI for c1,c2,d1,d2 and d3. All monthly means 1958 to 2016
DOI: 10.17632/7mnprnv5dy.3
title: Data for: Magnetic helices as metastable states of finite XY ferromagnetic chains: an analytical study

description: This pdf file contains supplementary materials for the manuscript "Magnetic helices as metastable states of finite XY ferromagnetic chains: an analytical study" by A. P. Popov and M. G. Pini. They are aimed at providing mathematical details about the theoretical calculations.
DOI: 10.5281/zenodo.1134820
title: Zenith: A Radiosonde Detector For Rapid-Response Ionising Atmospheric Radiation Measurements During Solar Particle Events

description: Supporting data for journal paper titled "Zenith: A Radiosonde detector for Rapid-Response Ionising Atmospheric Radiation Measurements during Solar Particle Events" published in the AGU journal Space Weather.
DOI: 10.5281/zenodo.1134821
title: Zenith: A Radiosonde Detector For Rapid-Response Ionising Atmospheric Radiation Measurements During Solar Particle Events

description: Supporting data for journal paper titled "Zenith: A Radiosonde detector for Rapid-Response Ionising Atmospheric Radiation Measurements during Solar Particle Events" published in the AGU journal Space Weather.
DOI: 10.17632/57phrpx66n.1
title: Data for: A novel solid-liquid route for synthesizing cubic garnet Al-substituted Li7La3Zr2O12

description: Inorganic synthetic chemistry prepared inorganic oxide polycrystalline powder XRD crystallographic data
DOI: 10.5281/zenodo.1101066
title: Pergola: Boosting Visualization And Analysis Of Longitudinal Data By Unlocking Genomic Analysis Tools - C. Elegans Unc-16 And N2 Motion Behavior Dataset

description: Dataset contains <em>Caenorhabditis</em> <em>elegans </em>motor behaviors originally used in this publication 10.1038/nmeth.2560 and downloaded from the available DB which points to Zenodo. The dataset consists in two worm strains, 20 individuals from a mutant unc-16 strain with reduced mobility and 40 individuals from a control N2 strain. The behavioral measures derived from each individual worm trajectory were available in a HDF5-formatted file (Hierarchical Data Format Version 5) that has been included in this dataset.

The data set consist in:

- a "mappings" folder containing all the mappings used by the pergola in the pipeline to convert data.

- a "N2" folder containing the 40 HDF5 files with the measures derived from the N2 worms.

- a "N2" folder containing the 20 HDF5 files with the measures derived from the unc-16 worms.
DOI: 10.5281/zenodo.1101067
title: Pergola: Boosting Visualization And Analysis Of Longitudinal Data By Unlocking Genomic Analysis Tools - C. Elegans Unc-16 And N2 Motion Behavior Dataset

description: Dataset contains <em>Caenorhabditis</em> <em>elegans </em>motor behaviors originally used in this publication 10.1038/nmeth.2560 and downloaded from the available DB which points to Zenodo. The dataset consists in two worm strains, 20 individuals from a mutant unc-16 strain with reduced mobility and 40 individuals from a control N2 strain. The behavioral measures derived from each individual worm trajectory were available in a HDF5-formatted file (Hierarchical Data Format Version 5) that has been included in this dataset.

The data set consist in:

- a "mappings" folder containing all the mappings used by the pergola in the pipeline to convert data.

- a "N2" folder containing the 40 HDF5 files with the measures derived from the N2 worms.

- a "N2" folder containing the 20 HDF5 files with the measures derived from the unc-16 worms.
DOI: 10.17632/2m7rnfg2k9.1
title: Data for: Three-step interferometric method with blind phase shifts by use of interframe correlation between interferograms

description: Flow-graf of the three-step interferometry method with blind phase shifts
DOI: 10.17632/8ghhz3kf68.1
title: Data for: Oxytocin and the Warm Outer Glow: Thermoregulatory Deficits Cause Huddling Abnormalities in Oxytocin-Deficient Mouse Pups
DOI: 10.17632/xmk3v8ty37.1
title: Data for: Determination of Trace elements and Lanthanide (REE) signatures in uranium mine products in South Africa by means of Inductively Coupled Plasma Mass Spectrometry

description: Raw data for the REE Patterns
DOI: 10.5281/zenodo.1135141
title: Molecular Dynamics Simulation Trajectory Of An Anionic Lipid Bilayer: 100 Mol% Dops With Na+ Counterions Using Ff99 Ions

description: <strong>System: </strong>Symmetric bilayer of anionic DOPS (1,2-Dioleoyl-<em>sn</em>-glycero-3-phosphoserine 100 mol-%) lipids with sodium (Na<sup>+</sup>) counter ions.

<strong>Number of DOPS:</strong> 128.<br>
<strong>Number of Na<sup>+</sup>-ions:</strong> 128.<br>
<strong>Number of waters:</strong> 4480.

<strong>Lipid model:</strong> Amber Lipid 17 [IR Gould, AA Skjevik, CJ Dickson, BD Madej, RC Walker: "Lipid17: A Comprehensive AMBER Force Field for the Simulation of Zwitterionic and Anionic Lipids" in prep. (2018)].

<strong>Ion models: </strong> Amber ff99 [J Åqvist <em>J. Phys. Chem.</em> <strong>94</strong> 8021 (1990)].

<strong>Water model:</strong> TIP3P [WL Jorgensen, J Chandrasekhar, JD Madura, RW Impey, ML Klein <em>J. Chem. Phys.</em> <strong>79</strong> 926 (1983)].

<strong>Simulation engine:</strong> Amber16 [DA Case et al. <em>AMBER 2017</em> UCSF (2017)].

<strong>Number of independent repeats per setup: </strong>2.<br>
<strong>Trajectory lengths per repeat:</strong> 400 ns + 100 ns.<br>
<strong>Previously equilibrated for:</strong> 100 ns.<br>
<strong>Sampling rate:</strong> every 10 ps.

<strong>Time integration step:</strong> 2 fs.

<strong>Thermodynamic ensemble:</strong> NpT. <br>
<strong>Temperature coupling:</strong> 'Langevin' at T = 303 K.<br>
<strong>Pressure coupling: '</strong>Berendsen' [<em>J. Chem. Phys.</em> <strong>81</strong> 3684 (1984); <em>J. Chem. Phys.</em> <strong>103</strong> 10252 (1995)] with xy and z coupled separately at p = 1.0 bar with no surface tension.

<strong>Electrostatics: </strong>PME [<em>J. Chem. Phys.</em> <strong>98</strong> 10089 (1993);<em> J. Chem. Theory Comput.</em> <strong>9</strong> 3878 (2013)].<br>
<strong>Van der Waals:</strong> Turned off between 1.0 nm and 1.5 nm.

<strong>Constraints: </strong>Lengths of covalent bonds involving Hydrogens in lipids using SHAKE [<em>J. Comput. Phys.</em> <strong>23</strong> 327 (1977)], in water using SETTLE [<em>J. Comput. Chem. </em><strong>13</strong> 952 (1992)].

<strong>Used in publications: </strong>OHS Ollila et al. "NMRlipids IV: Headgroup & glycerol backbone structures, and cation binding in bilayers with PS lipids" in prep (2018).
description: B.K acknowledges financial support from International Max Planck Research School on Multiscale Bio-Systems
DOI: 10.5281/zenodo.1135142
title: Molecular Dynamics Simulation Trajectory Of An Anionic Lipid Bilayer: 100 Mol% Dops With Na+ Counterions Using Ff99 Ions

description: <strong>System: </strong>Symmetric bilayer of anionic DOPS (1,2-Dioleoyl-<em>sn</em>-glycero-3-phosphoserine 100 mol-%) lipids with sodium (Na<sup>+</sup>) counter ions.

<strong>Number of DOPS:</strong> 128.<br>
<strong>Number of Na<sup>+</sup>-ions:</strong> 128.<br>
<strong>Number of waters:</strong> 4480.

<strong>Lipid model:</strong> Amber Lipid 17 [IR Gould, AA Skjevik, CJ Dickson, BD Madej, RC Walker: "Lipid17: A Comprehensive AMBER Force Field for the Simulation of Zwitterionic and Anionic Lipids" in prep. (2018)].

<strong>Ion models: </strong> Amber ff99 [J Åqvist <em>J. Phys. Chem.</em> <strong>94</strong> 8021 (1990)].

<strong>Water model:</strong> TIP3P [WL Jorgensen, J Chandrasekhar, JD Madura, RW Impey, ML Klein <em>J. Chem. Phys.</em> <strong>79</strong> 926 (1983)].

<strong>Simulation engine:</strong> Amber16 [DA Case et al. <em>AMBER 2017</em> UCSF (2017)].

<strong>Number of independent repeats per setup: </strong>2.<br>
<strong>Trajectory lengths per repeat:</strong> 400 ns + 100 ns.<br>
<strong>Previously equilibrated for:</strong> 100 ns.<br>
<strong>Sampling rate:</strong> every 10 ps.

<strong>Time integration step:</strong> 2 fs.

<strong>Thermodynamic ensemble:</strong> NpT. <br>
<strong>Temperature coupling:</strong> 'Langevin' at T = 303 K.<br>
<strong>Pressure coupling: '</strong>Berendsen' [<em>J. Chem. Phys.</em> <strong>81</strong> 3684 (1984); <em>J. Chem. Phys.</em> <strong>103</strong> 10252 (1995)] with xy and z coupled separately at p = 1.0 bar with no surface tension.

<strong>Electrostatics: </strong>PME [<em>J. Chem. Phys.</em> <strong>98</strong> 10089 (1993);<em> J. Chem. Theory Comput.</em> <strong>9</strong> 3878 (2013)].<br>
<strong>Van der Waals:</strong> Turned off between 1.0 nm and 1.5 nm.

<strong>Constraints: </strong>Lengths of covalent bonds involving Hydrogens in lipids using SHAKE [<em>J. Comput. Phys.</em> <strong>23</strong> 327 (1977)], in water using SETTLE [<em>J. Comput. Chem. </em><strong>13</strong> 952 (1992)].

<strong>Used in publications: </strong>OHS Ollila et al. "NMRlipids IV: Headgroup & glycerol backbone structures, and cation binding in bilayers with PS lipids" in prep (2018).
description: B.K acknowledges financial support from International Max Planck Research School on Multiscale Bio-Systems
DOI: 10.21947/1415460
title: Provider - regional - Raw Data

description: This data set includes wind farm power output and wind speed data for input and validation.
DOI: 10.7289/v5br8qfb
title: Raw multibeam bathymetry data collected in the Central Pacific Ocean on cruise KM1718 of RV Kilo Moana for the U.S. Extended Continental Shelf Project
DOI: 10.17632/5jc9cr8xch.1
title: Data for: Neurophysiological study on the effect of short time durations on deep breathing: a randomized controlled trial

description: Here is the raw EEG data for each group: Control (Con), deep breathing for 5 minutes (DB5), deep breathing for 7 minutes (DB7), and deep breathing for 9 minutes (DB9). The time sections are as follow: R1 - baseline; INT - during deep breathing; R2 - after deep breathing; R3 - follow-up session after 7 days. The data are analyzed using EEGLAB and FASTER, extracting the relative mean power for the theta, alpha, and beta bands and plotting their topographies.
DOI: 10.5523/bris.3brgj8rdhx552285lcuv189esy
title: TEM data from residual casting regions in an ex-service and subsequently aged AISI Type 316H stainless steel

description: Transmission electron microscopy data for secondary phase evolution in Cr rich residual casting regions in an ex-service (67000 hrs at 490-530 degC) and subsequently heat treated (+22000 hrs at 550 degC) large AISI Type 316H Austenitic Stainless Steel casting.
DOI: 10.6073/pasta/0f857ea07543b4ddfcca921f583a2e6e
title: Compiled long-term community composition datasets of primary producers and consumers in
      both freshwater and terrestrial communities
DOI: 10.5061/dryad.h2c0c/1
title: photosynthesis_alldays_alltraits_fordryad

description: File containing data for all traits measured for all days of the experiment. Column names are as follows: batch_ID indicates a unique batch ID that contains the date; flat_ID indicates a unique flat ID; camera indicates which camera recorded the data; genotype indicates the RIL (numeric) or parental (It = Italy; Sw = Sweden) genotype ID; replicate identifies different replicates of an individual genotype within a batch; the 9 day columns represent daily means (individual values for Fv/Fm) for each of the days of the DEPI experiment (day0 was in the initial warm conditions, subsequent days were at 4C).