cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gg296n
title: Occurrence Download

description: A dataset containing 10038 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Sericossypha albocristata (Lafresnaye, 1843)"
 ]
}

 The dataset includes 10038 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000646-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s8j4m6
title: Occurrence Download

description: A dataset containing 35283 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Piranga leucoptera Trudeau, 1840"
 ]
}

 The dataset includes 35283 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000648-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pd2ga7
title: Occurrence Download

description: A dataset containing 122992101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation)",
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 2012-2014"
 ]
}

 The dataset includes 122992101 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000611-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v6qwcf
title: Occurrence Download

description: A dataset containing 2915 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Specimen)",
 "TaxonKey is Balantiopteryx plicata Peters, 1867",
 "Year 1970-2025"
 ]
}

 The dataset includes 2915 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000649-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wp6arf
title: Occurrence Download

description: A dataset containing 8624 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Satyrus actaea Esper, 1781)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1981",
 "Geometry POLYGON((-30 25,50 25,50 75,-30 75,-30 25))"
 ]
}

 The dataset includes 8624 records from 192 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000650-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nm2rdh
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is Aedes aegypti (Linnaeus, 1762)",
 "Year 1900-2025"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000651-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14628295
title: Supplement data:  Mechanisms Driving the Extensive Antarctic Bottom Water in the Glacial Atlantic

description: Supplementary Data for "Mechanisms Driving the Extensive Antarctic Bottom Water in the Glacial Atlantic"The supplementary material includes the model output of Atlantic Meridional Overturning Circulation (AMOC) stream function, mixed layer depth (MLD) comparisons for the present day (PD) and Last Glacial Maximum (LGM) periods, as well as sea ice metrics—velocity, thickness, and concentration—under contrasting climatic conditions.
DOI: 10.5281/zenodo.14628296
title: Supplement data:  Mechanisms Driving the Extensive Antarctic Bottom Water in the Glacial Atlantic

description: Supplementary Data for "Mechanisms Driving the Extensive Antarctic Bottom Water in the Glacial Atlantic"The supplementary material includes the model output of Atlantic Meridional Overturning Circulation (AMOC) stream function, mixed layer depth (MLD) comparisons for the present day (PD) and Last Glacial Maximum (LGM) periods, as well as sea ice metrics—velocity, thickness, and concentration—under contrasting climatic conditions.
DOI: 10.5281/zenodo.15080037
title: Supplement data:  Mechanisms Driving the Extensive Antarctic Bottom Water in the Glacial Atlantic

description: Supplementary Data for "Mechanisms Driving the Extensive Antarctic Bottom Water in the Glacial Atlantic"The supplementary material includes the model output of Atlantic Meridional Overturning Circulation (AMOC) stream function, mixed layer depth (MLD) comparisons for the present day (PD) and Last Glacial Maximum (LGM) periods, as well as sea ice metrics—velocity, thickness, and concentration—under contrasting climatic conditions.
DOI: 10.15468/dl.mu82bv
title: Occurrence Download

description: A dataset containing 670 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mucuna sloanei Fawc. & Rendle)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 670 records from 118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000653-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jyukme
title: Occurrence Download

description: A dataset containing 18665 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Satyrus ferula Fabricius, 1793)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1981",
 "Geometry POLYGON((-30 25,50 25,50 75,-30 75,-30 25))"
 ]
}

 The dataset includes 18665 records from 290 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000652-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15080042
title: Rastreamento dos resultados da análise do Survey para a elaboração da última versão do catálogo de boas práticas

description: Demonstra as alterações aplicadas na terceira versão do catálogo de boas práticas para o aprimoramento na quarta e última versão do catálogo, utilizando os resultados coletados pela etapa de Survey da pesquisa.
DOI: 10.5281/zenodo.15080043
title: Rastreamento dos resultados da análise do Survey para a elaboração da última versão do catálogo de boas práticas

description: Demonstra as alterações aplicadas na terceira versão do catálogo de boas práticas para o aprimoramento na quarta e última versão do catálogo, utilizando os resultados coletados pela etapa de Survey da pesquisa.
DOI: 10.15468/dl.mgcyps
title: Occurrence Download

description: A dataset containing 6635 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Danaus chrysippus (Linnaeus, 1758))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1981",
 "Geometry POLYGON((-30 25,50 25,50 75,-30 75,-30 25))"
 ]
}

 The dataset includes 6635 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000655-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.twbkns
title: Occurrence Download

description: A dataset containing 1547 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Myrica cerifera Bigelow, Myrica cerifera L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1547 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000657-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7x8qvj
title: Occurrence Download

description: A dataset containing 6107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Specimen)",
 "TaxonKey is Peromyscus levipes Merriam, 1898",
 "Year 1970-2025"
 ]
}

 The dataset includes 6107 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000656-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aeckrn
title: Occurrence Download

description: A dataset containing 10197 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Danaus plexippus (Linnaeus, 1758))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1981",
 "Geometry POLYGON((-30 25,50 25,50 75,-30 75,-30 25))"
 ]
}

 The dataset includes 10197 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000658-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ujxqhd
title: Occurrence Download

description: A dataset containing 118107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Brenthis ino (von Rottemburg, 1775))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1981",
 "Geometry POLYGON((-30 25,50 25,50 75,-30 75,-30 25))"
 ]
}

 The dataset includes 118107 records from 416 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000641-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00009088.1
title: Available datapackage for study 'Effect of Passive Immunization on the Progression of Mild Alzheimer's Disease: Solanezumab (LY2062430) Versus Placebo'

description: To test the idea that solanezumab will slow the cognitive decline of Alzheimer's Disease (AD) as compared with placebo in participants with mild AD.
DOI: 10.15468/dl.ad5jq6
title: Occurrence Download

description: A dataset containing 909 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Necturus punctatus (Gibbes, 1850))"
 ]
}

 The dataset includes 909 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040557-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qwt2g8
title: Occurrence Download

description: A dataset containing 366 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Notophthalmus meridionalis (Cope, 1880))"
 ]
}

 The dataset includes 366 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040560-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ek6c3j
title: Occurrence Download

description: A dataset containing 914 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rodolia cardinalis (Mulsant, 1850)"
 ]
}

 The dataset includes 914 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040559-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00009086.1
title: Available datapackage for study 'Effect of Passive Immunization on the Progression of Alzheimer's Disease: LY2062430 Versus Placebo'

description: Alzheimer's disease (AD) is an age-related degenerative disorder of the brain, characterized by progressive decline in cognitive function and ability to perform activities of daily living, and ultimately can lead to death due to complications of the disease. AD is thought to be caused by an excess of A-Beta amyloid, a sticky protein in the brain that forms amyloid plaques. Treatments that slow the synthesis or deposition of A-Beta amyloid, or that increase clearance, might be expected to slow the progression of AD. LY2062430 (solanezumab) is a humanized anti-A Beta peptide immunoglobulin G-1 (IgG1) monoclonal antibody being developed for the treatment of AD. The primary hypothesis being tested is that LY2062430 will slow cognitive and functional decline in AD as compared with placebo. Each patient's participation will last approximately 19 months. Patients taking approved AD medications may participate in this study and continue taking these medications during the study.
DOI: 10.15468/dl.drazbd
title: Occurrence Download

description: A dataset containing 366 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Notophthalmus meridionalis (Cope, 1880))"
 ]
}

 The dataset includes 366 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040562-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ng5gvh
title: Occurrence Download

description: A dataset containing 162 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Physocarpus amurensis (Maxim.) Maxim."
 ]
}

 The dataset includes 162 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040563-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10650921
title: Single-cell transcriptomic analyses reveal distinct immune cell contributions to epithelial barrier dysfunction in checkpoint inhibitor colitis

description: Abstract

Therapeutic immune checkpoint blockade has revolutionized oncology, but treatments are limited by immune-related adverse events, including checkpoint inhibitor colitis (irColitis). To define molecular drivers of irColitis, we profiled ~300,000 cells from the colon mucosa and blood of 29 patients and controls. Patients with irColitis showed expanded mucosal Tregs, ITGAEHi CD8 tissue-resident memory T cells expressing CXCL13 and Th17 gene programs, and circulating ITGB2Hi CD8 T cells recruited by ICAM and CXCR3 ligands. Cytotoxic GNLYHi CD4 T cells, ITGB2Hi CD8 T cells from circulation, and endothelial cells associated with hypoxia gene programs were further expanded in colitis associated with anti-PD-1/CTLA-4 compared to anti-PD-1 therapy. Luminal epithelial cells in irColitis patients expressed PD-L1 and interferon-induced signatures associated with apoptosis, increased cell turnover, and malabsorption. Together, we highlight novel roles for circulating T cells and epithelial-immune crosstalk critical to PD-1/CTLA-4-dependent tolerance and barrier function and nominate novel irColitis therapeutic targets.

---

This Zenodo page provides download links for the code we developed for the analysis and the website, as well as the files containing analysis results.

To get started, download the zip file shown below. For analysis results, look for the analysis/output folder and read our tutorial for how to access the expression data in R and Python.

The v3 release adds cell cluster marker data for Luoma CD4 T cells and Luoma CD8 T cells to the file analysis/output/de-ova.tsv.gz.
DOI: 10.5281/zenodo.8088435
title: Single-cell transcriptomic analyses reveal distinct immune cell contributions to epithelial barrier dysfunction in checkpoint inhibitor colitis

description: Abstract

Therapeutic immune checkpoint blockade has revolutionized oncology, but treatments are limited by immune-related adverse events, including checkpoint inhibitor colitis (irColitis). To define molecular drivers of irColitis, we profiled ~300,000 cells from the colon mucosa and blood of 29 patients and controls. Patients with irColitis showed expanded mucosal Tregs, ITGAEHi CD8 tissue-resident memory T cells expressing CXCL13 and Th17 gene programs, and circulating ITGB2Hi CD8 T cells recruited by ICAM and CXCR3 ligands. Cytotoxic GNLYHi CD4 T cells, ITGB2Hi CD8 T cells from circulation, and endothelial cells associated with hypoxia gene programs were further expanded in colitis associated with anti-PD-1/CTLA-4 compared to anti-PD-1 therapy. Luminal epithelial cells in irColitis patients expressed PD-L1 and interferon-induced signatures associated with apoptosis, increased cell turnover, and malabsorption. Together, we highlight novel roles for circulating T cells and epithelial-immune crosstalk critical to PD-1/CTLA-4-dependent tolerance and barrier function and nominate novel irColitis therapeutic targets.

---

This Zenodo page provides download links for the code we developed for the analysis and the website, as well as the files containing analysis results.

To get started, download the zip file shown below. For analysis results, look for the analysis/output folder and read our tutorial for how to access the expression data in R and Python.

The v3 release adds cell cluster marker data for Luoma CD4 T cells and Luoma CD8 T cells to the file analysis/output/de-ova.tsv.gz.
DOI: 10.15468/dl.75nd6v
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Notophthalmus meridionalis meridionalis)"
 ]
}

 The dataset includes 19 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040564-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cfh8wf
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Notophthalmus meridionalis meridionalis)"
 ]
}

 The dataset includes 19 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040566-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14501697
title: Dataset and code_Litter decomposition in Global Drylands

description: Dataset and R code related to the publication of "Patterns and Driving Factors of Litter Decomposition Rates in Global Dryland Ecosystems".The file contains two subfiles: one is the global dryland litter decomposition database, and the other is the R code corresponding to the results generated in the article. Additionally, a list of references for the data sources is included.If you discover a bug, artifact, or inconsistency, or if you have a question please contact with: ydzhao_st@rcees.ac.cn
DOI: 10.5281/zenodo.14501698
title: Dataset and code_Litter decomposition in Drylands

description: Dataset and R code related to the publication of "Patterns and Driving Factors of Litter Decomposition Rates in Global Dryland Ecosystems".The file contains two subfiles: one is the global dryland litter decomposition database, and the other is the R code corresponding to the results generated in the article. Additionally, a list of references for the data sources is included.If you discover a bug, artifact, or inconsistency, or if you have a question please contact with: ydzhao_st@rcees.ac.cn
DOI: 10.5281/zenodo.14522906
title: Dataset and code_Litter decomposition in Global Drylands

description: Dataset and R code related to the publication of "Patterns and Driving Factors of Litter Decomposition Rates in Global Dryland Ecosystems".The file contains two subfiles: one is the global dryland litter decomposition database, and the other is the R code corresponding to the results generated in the article. Additionally, a list of references for the data sources is included.If you discover a bug, artifact, or inconsistency, or if you have a question please contact with: ydzhao_st@rcees.ac.cn
DOI: 10.15468/dl.x6z5w6
title: Occurrence Download

description: A dataset containing 134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Notophthalmus perstriatus (Bishop, 1941))"
 ]
}

 The dataset includes 134 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040567-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ej2r2
title: Occurrence Download

description: A dataset containing 134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Notophthalmus perstriatus (Bishop, 1941))"
 ]
}

 The dataset includes 134 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040568-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26780239
title: <sup>Cell-to-Cell Natural Transformation-mediated Efficient Plasmid Transfer between </sup><sup><em>Bacillus</em></sup><sup> Species</sup> data

description: 16srDNA sequence of wild bacilli in the study, sequeced by primers pair listed in supplementary materials. TrpC of 48 transformants in Fig. 4 and Fig. S3 fasta sequence material.
DOI: 10.6084/m9.figshare.26780239.v1
title: <sup>Cell-to-Cell Natural Transformation-mediated Efficient Plasmid Transfer between </sup><sup><em>Bacillus</em></sup><sup> Species</sup> data

description: 16srDNA sequence of wild bacilli in the study, sequeced by primers pair listed in supplementary materials. TrpC of 48 transformants in Fig. 4 and Fig. S3 fasta sequence material.
DOI: 10.15468/dl.mxv64f
title: Occurrence Download

description: A dataset containing 189674 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "GadmGid is ARE.1.1_1",
 "TaxonKey is Passeriformes",
 "Year 1992-2023"
 ]
}

 The dataset includes 189674 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040561-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vhbxvv
title: Occurrence Download

description: A dataset containing 63652 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Notophthalmus viridescens (Rafinesque, 1820))"
 ]
}

 The dataset includes 63652 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040569-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.