cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/f38s2rsn3t
title: Melodic Medicine: How Classical Turkish Music Soothes Stress and Eases Loneliness

description: This study investigated the impact of traditional classical Turkish music as a telehealth intervention on reducing stress and loneliness among elderly individuals. Elders were randomized into two main groups according to whether they lived alone or with someone. The experimental study design and sample selection were conducted according to the CONSORT model. The final sample comprised 70 elders who were divided into two randomized groups: control group (no intervention applied, n =34), and intervention group (livestream participation, n = 36). Because there was no comparable research study with a similar research sample and intervention, the representativeness of the sample group for the population was confirmed using Type 1-2 error and confidence level, as well as power analysis data obtained after collecting follow-up data. In a prior study in which experimental power analysis was pertinent, the calculated power of the research was 88% with a post hoc 95% confidence interval and a sampling error of d = 0.05. We used G*Power 3.1.9.7 software to conduct a power analysis based on a mixed design analysis of variance test. The analysis showed that the power value was 0.89, which indicates that the sample power was 99.0%.

Interactive livestream musical interventions were performed for four weeks, in total eight sessions. The data of the study were collected three times with the Perceived Stress Scale and UCLA Loneliness Scale III in a pretest-posttest-follow-up test design (12th week after the posttest). 
Significance of difference tests, repeated variance analyses, and strength of influence tests were performed in dependent and independent groups with and without normal distribution. 

Interactive livestream classical Turkish music with a group effectively decreased the total scores of the Perceived Stress Scale, including perceived insufficient self-efficacy, perceived distress, and UCLA Loneliness Scale III scores, among elderly individuals who experienced physical distancing measures during the pandemic period in a short amount of time (p<0,05). Musical interventions demonstrated a high level of effect size (ηp2= 0,897).
DOI: 10.17632/fnsvknd72c
title: LINF_080010700

description: eukaryotic translation initiation factor 2 beta subunit; Leishmania infantum
DOI: 10.17632/gjmr4d9w6h
title: Articles on Microfinance

description: The dataset includes bibliographic information of 3281 articles of the topic of Microfinance in the Scopus database
DOI: 10.17632/hc446bk7bd
title: The Impact of a Maternal and Offspring Obesogenic diet on Daughter’s Oocyte Mitochondrial Ultrastructure and Bioenergetic Responses. Insights from an Outbred Mouse Model.

description: Manuscript under review
DOI: 10.17632/k9vknrh988
title: Managerial capital in small business

description: It is a database of a survey in 2018 in the small businesses in La Mana (Ecuador).
DOI: 10.17632/nvc8bcf5jk
title: Vol. 15(1), 2022

description: For full text and other information, please visit: https://escs.birjand.ac.ir/issue_294_295.html?lang=en
DOI: 10.17632/r6hcbkp53n
title: Development of a spreadsheet-based model for transient groundwater modelling

description: The supplementary data consists of spreadsheet files for the four models assessed in the paper. Models included from the paper are K2005A, A2016 (for both confined and unconfined aquifers) and A2016STA (included in the A2016 unconfined model). In addition, K2005B, which uses average instead of harmonic mean to determine cell to cell hydraulic conductance is included. Data Set S1 (DS01). Spreadsheet model containing both K2005A and K2005B models. Both models use many of the same tabs, with the main differences being how hydraulic conductivity is averaged between cells. In K2005A the harmonic mean is used. K2005B uses the arithmetic mean. File: ds01_Transient Groundwater K2005A_K2005B Data Set S2 (DS02). Spreadsheet model containing both the K2005B model, and a modified version – K2005M – which incorporates an aquifer thickness variable and initial head values. Both models use many of the same sheets for their datasets. File: ds02_Transient Groundwater K2005M_K2005B Data Set S3 (DS03). Spreadsheet model A2016 for confined aquifers based on the mathematics and structure of Modflow and using macros for timestep control. File: ds03_Transient Groundwater A2016_confined Data Set S4 (DS04). Spreadsheet model A2016 for unconfined aquifers, based on the mathematics and structure of Modflow and using macros for timestep control. This spreadsheet also includes data to allow for the application of the specified thickness approximation. File: ds04_Transient Groundwater A2016_unconfined Updated: 30/07/2018 - Cleaned up some terminology and units. Removed redundant macro button. Updated: 8/8/18 - Added tutorial. Updated: 9/5/19 - Updated title to match the paper.
DOI: 10.17632/sp3xdygfxj
title: Proteome-wide quantitative RNA interactome capture (qRIC) identifies phosphorylation sites with regulatory potential in RBM20. Vieira-Vieira et al. Figure 5A. A10 RBM20

description: Cellular mRNA-binding proteins (mRBPs) are major regulators of gene expression at the post-transcriptional level. While many posttranslational modification sites in mRBPs have been identified, little is known about how these modifications regulate mRBP function. Here, we developed quantitative RNA-interactome capture (qRIC) to quantify the fraction of cellular mRBPs pulled down with polyadenylated mRNAs. Combining qRIC with phosphoproteomics allowed us to systematically compare pull-down efficiencies of phosphorylated and non-phosphorylated forms of mRBPs. Almost 200 phosphorylation events increased or decreased pull-down efficiency compared to the unmodified mRBPs and thus have regulatory potential. Our data captures known regulatory phosphorylation sites in ELAVL1, SF3B1 and UPF1 and identifies new potentially regulatory sites. Follow-up experiments on the cardiac splicing regulator RBM20 revealed that multiple phosphorylation sites in the C-terminal disordered region affect nucleo-cytoplasmic localization, association with cytoplasmic ribonucleoprotein granules and alternative splicing. Together, we show that qRIC in conjunction with phosphoproteomics is a scalable method to identify functional posttranslational modification sites in mRBPs.
DOI: 10.17632/wn5282xz6v
title: The diet of Hylaeamys seuanezi (Weksler, Geise & Cerqueira, 1999) (Rodentia: Cricetidae) in forest formations: a comparison of methods and habitats

description: Coverage of vegetable and animal content and occurence of 17 itens consumed by Hylaeamys seuanezi in forest and agroforest sites, acquired from stomach and fecal contents.
"Diet_Hylaeamys_by sample" - isolated stomach and fecal samples 
"Diet_Hylaeamys_by individual" - stomach and fecal sample from the same individual pooled together
DOI: 10.17632/4sw99h374p
title: Robotics in marketing education

description: Dataset for an experiment following robotics competition
DOI: 10.17632/b6fzfnnkzj
title: Data for: The station blackout accident in a dual-cooled annular fuel of a VVER-1000 reactor with application of portable pumps for mitigating the accident

description: Results Data
DOI: 10.17632/drtddfyvzc
title: Supplemental materials for 'Study on the role of soot and heat fluxes in upward flame spread using a wall resolved large eddy simulation approach'

description: flameSpreadModelling.pdf: The description of flame spread modelling used in this study. In the paper, only updated sub-models are described. The PMMA wall size is 1 m in height, 0.3 m in width, and 0.01 m in thickness. The flame spreads to the top of the wall about 500 s. Giving incident radiative heat flux of 45 kW/m2 for 75 s triggered ignition. After that, a small flame was created by the combustion model based on infinitely fast chemistry at 0.005 ≤ x ≤ 0.05 m. The time was reset to 0 after the flame was sufficiently sustained. flameVolume.gif: This file is an animation of fire growth for the large-scale flame spread scenario. gasTemperature.gif: This file is an animation of gas temperature evolution. pyrolysisFront.gif: This file is an animation of progress of the pyrolysis front. The pyrolysis front is defined as Tsolid = 580 K at 0.5 mm from the interface. The contour line shows Tsolid = 580 K. At x &gt; 1 m, the temperature is higher owing to an inert wall with no pyrolysis. qtot.gif: This file is an animation of transient total heat flux. qconv.gif: This file is an animation of transient convective heat flux. qrad.gif: This file is an animation of transient radiative heat flux.
DOI: 10.17632/j5ss4th6dk
title: SCLC HTG Edge dataset fGSEA molecular pathways

description: Sequencing heatmaps broken down to GO pathway iterations in distinct SCLC tumor subsets. The dataset is based on the HTG Edge oncological RNAseq panel of the same 32-patient SCLC cohort: doi: 10.17632/7n6rk5zgjj.1
DOI: 10.17632/jvwgn9wptz
title: Glycosylation Analysis of Feline Small Intestine Following Toxoplasma gondii Infection- raw datas 2

description: Glycosylation Analysis of Feline Small Intestine Following Toxoplasma gondii Infection- raw datas, Rawdata_2.tar, Rawdata_5.tar, Rawdata_6.tar,
DOI: 10.17632/r8st928xrz
title: LINF_270012100

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/sprh8jxns5
title: Chromosomal identification of aneuploidy in oysters

description: Identification of extra or missing chromosomes in banded aneuploid karyotypes of the pearl oyster Pinctada imbricata, to assess if the gain/loss is random or if there are chromosomal pairs more prone to loss/gain of chromosomes.
DOI: 10.17632/4rvsy65stz
title: 3D reconstruction of seawater micro-droplets on cleaved calcite in n-decane measured with AFM

description: The data-set contains the 3D reconstruction of seawater micro-droplets on cleaved calcite in n-decane measured with AFM which can be used for the assessment of pinning effects along the three-phase contact line. The reconstruction was created from force-distance curves obtained at each pixel of the AFM image following the description in the referenced paper. The reconstruction has the dimensions 1024x1024x1024 and a voxel size of 0.0383 μm × 0.0383 μm × 0.0383 μm with the values 0,1,2 representing n-decane, calcite and seawater respectively. Further, the data-set contains the original height map of the calcite surface underneath the droplet with greater accuracy with the dimensions 128 x 128, a pixel size of 0.29 μm x 0.29 μm. We recommend applying a median filter to remove instrumental artefacts. In combination, the reconstruction allows for small scale contact angle measurements and to correlate these measurements to the natural roughness of cleaved calcite.
DOI: 10.17632/54cb62zsnb
title: Hohl et al., Rabaul volcanic Complex major, trace element and Sr-Hf-Nd-Fe isotope data

description: Table 1: Petrography of sampled Lavas of the Rabaul volcanic system Table 2: Major element concentrations of Rabaul lavas Table 3: Trace element concentrations of Rabaul lavas and reference materials Table 4: HSFE element concentrations of Rabaul lavas obtained by isotope dilution method Table 5: Compositions of radiogenic Hf, Nd, Sr and stable Fe isotopes in Rabaul lavas
DOI: 10.17632/5y4hb7jzth
title: LINF_320040400

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/6w768v767n
title: LINF_340009000

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/d6792247k5
title: Violet phosphorene nanosheets and cold atmospheric plasma for synergetic cancer therapy

description: Metabolomic raw data
DOI: 10.17632/fhr3yf226z
title: Influence of universities and agglomeration economies on regional innovation performance

description: The dataset aims to analyze the influence of agglomeration economies and universities on the performance of regional innovation. The data covers all 133 regions of Brazil and a 9-year cross-section. It is noteworthy that, the analysis data were extracted through the application of technical fda synthetic indicators, more specifically obtained through the application of the DP2 technique.
DOI: 10.17632/gg6zz53rhj
title: Data for Figures 2 B, C, D
DOI: 10.17632/gs8j93pct8
title: Establishment of dsDNA-dsDNA interactions by the condensin complex. Tang et al

description: SDS-PAGE Coomassie staining and fluorescence scanning of condensin purification fractions. Condensin loading assays using either condensin immunoprecipitation or DNA immunoprecipitation.
DOI: 10.17632/jbwfm2vs7d
title: ACHIEVING VIROLOGICAL CONTROL IN PAN-RESISTANT HIV-1 INFECTION: A CASE SERIES 

description: We report findings from heavily treatment-experienced PLWH with a pan-resistant HIV-1 infection, who achieved virological control once introduced injections of ibalizumab, that is free from cross-resistance with all the antiretroviral drugs available and ensures patient adherence due to a close monitoring attributable to the route of administration, combined with recycled enfuvirtide and an optimized background regimen, selected on the basis of an accurate evaluation of resistance mutations.
Please refer to DOI: https://doi.org/10.1016/j.ebiom.2022.103906
DOI: 10.17632/rktf8xt7v4
title: Arthrospira_16S

description: The dataset of  92 16S rRNA gene sequences (1294 characters) of Arthrospira platensis and some related taxa retrieved from the NCBI (>99% identity, 100% coverage, >1250 bp) and the datasets of Choi et al. (2012) and Papapanagiotou and Gkelis (2019) used to access affinity of the strain Arthrospira platensis IBSS-31.
DOI: 10.17632/tmhyptg3xy
title: Combination of cattle urine and dung patches synergically increased nitrous oxide emissions from temperate grassland under wet conditions

description: It contains experimental data from the study "Combination of cattle urine, and dung patches synergically increased nitrous oxide emissions from temperate grassland under wet conditions".
Abstract: Separate and combined cattle urine and dung patches were applied on a grassland. Nitrous oxide and methane emissions were monitored for 98 days in two seasons (dry and wet). Emission factors were determined. Ammonium (NH4), nitrate (NO3) and water full pore space (%WFPS) was monitored.

Research Data includes the following variables over the sampled periods:
- N2O and CH4 fluxes, cumulative emissions and EF.
- NH4 and NO3 soil content and WFPS in soil
DOI: 10.17632/v8sxysdhfb
title: A proteome dataset for TLR4 & IL1R activation & inhibition via FDA /EMA -approved drugs in chondrocytes, osteoblasts and synoviocytes

description: Mendely Data associated with:
Title: A transcriptome & proteome dataset for TLR4 & IL1R activation & inhibition in chondrocytes, osteoblasts and synoviocytes
Journal Title: Data in Brief
Corresponding Author: Dr. Rodolfo Gomez
All Authors: Eloi Franco-Trepat; María Guillán-Fresco; Ana Alonso-Pérez; Miriam López-Fagúndez; Andrés Pazos-Pérez; Antia Crespo-Golmar; Oreste Gualillo; Alberto Jorge-Mora; Susana Belén Bravo; Rodolfo Gomez
DOI: PENDING

The data provided is also associated as Supplementary Data to
Title: Repurposing drugs to inhibit innate immune responses associated with TLR4, IL1, and NLRP3 signaling in joint cells
Journal Title: Biomedicine & Pharmacotherapy
Corresponding Author: Dr. Rodolfo Gomez
All Authors: Eloi Franco-Trepat; María Guillán-Fresco; Ana Alonso-Pérez; Miriam López-Fagúndez; Andrés Pazos-Pérez; Antia Crespo-Golmar; Oreste Gualillo; Alberto Jorge-Mora; Susana Belén Bravo; Rodolfo Gomez
DOI: doi.org/10.1016/j.biopha.2022.113671

Data Description
Table 1
Merged dataset of approved drugs by the Federal Drugs Agency (FDA) & European Medicine Agency (EMA). Synonyms, formulations, and doses were included as individual entries.
Table 2
Merged dataset of approved active compounds by the Federal Drugs Agency (FDA) & European Medicine Agency (EMA). Synonyms, formulations, and doses were included as individual entries.
Table 3
List of all primers used in the manuscript including sequence, melting temperature and RefSeq. All primers were purchased as “KiCqStart® SYBR® Green Primers” ref. KSPQ12012 (Merck; USA).  
Table 4
Cellular proteome & secretome qualitative DDA data (n3) obtained by MALDI-TOFF of primary human OA chondrocytes (Control, TLR4 agonist LPS [100ng/ml] and IL1R agonist IL1β [0.1ng/ml]).
Table 5
Cellular proteome quantitative SWATH data (n=3) obtained by MALDI-TOFF of primary human OA chondrocytes (Control, TLR4 agonist LPS [100ng/ml] and IL1R agonist IL1β [0.1ng/ml]).
DOI: 10.17632/wbprcvz6h2
title: Centrality measures and H-bond clustering in proteins

description: Dataset includes : 1. MATLAB workflow to compute and plot centrality measures in protein structures, 2. Tcl script to visualize centrality measures in protein structures in VMD, 3. Matlab workflow to compute H-bond clusters in protein structures, 4. Tcl script to visualize clusters in protein structures in VMD, 5. Folder sample_folder contains output results after running the scripts in folders centrality_measures & hbond_clusters for SARS-CoV-2 spike glycoprotein in closed conformation (PDB ID: 6VXX). Workflow is generated and tested in MATLAB R2017b and VMD 1.9.3. Guidelines for running the scripts are in README text file in the analysis_code folder. "When using these scripts, please cite: Karathanou, K., Lazaratos, M., Bertalan, É., Siemers, M., Buzar, K., Schertler, G.F., Del Val, C. and Bondar, A.N., 2020. A graph-based approach identifies dynamic H-bond communication networks in spike protein S of SARS-CoV-2. Journal of structural biology, p.107617." ################################################################################################# Betweenness & Degree centrality measures: The Betweenness Centrality (BC) of a node ni gives the number of shortest-distance paths between any two other nodes nj and nk that pass via node ni divided by the total number of shortest paths that connect nj and nk irrespective of whether they pass via node ni. The normalized BC value of node ni is computed by dividing its BC by the number of pairs of nodes not including ni. The Degree Centrality (DC) of a node ni gives the number of edges of the node. The normalized DC value of node ni is computed by dividing its DC by the maximum possible edges to ni (which is N-1, where N is the number of nodes in the graph). References: Freeman LC: A set of measures of centrality based on betweenness. Sociometry 1977, 40:35-41. Freeman LC: Centrality in social networks. Conceptual clarification. Social Networks 1979, 1:215-239. Brandes U: A faster algorithm for betweenness centrality. Journal of Mathematical Sociology 2001, 25:163-177. ################################################################################################# The Connected Component search gives a sub-graph of H bonds, in which at least two nodes are connected to each other by H-bond pathways and no other nodes are connected in the sub-graph. We denote those sub-graphs as H-bond clusters. The cluster size is given by the total number of nodes (H-bonding amino-acid residues) of each cluster. References: Cormen TH, Leiserson CE, Rivest RL, Sten C (2009). Introduction to algorithms, 3rd edn. Massachusetts Institute of Technology
DOI: 10.17632/zh3yfd2vyf
title: Data 1 Vegetable lipid sources influence the growth of Japanese quails during the rearing phase 1

description: Article dataset Vegetable lipid sources influence the growth of Japanese quails during the rearing phase
DOI: 10.17632/3p997fsrc6
title: Multiple Perspectives with Online EFL Practicum Technology Learning: Case Study on a Cloud

description: This set of supplementary data is related to the article “Multiple Perspectives with Online EFL Practicum Technology Learning: Case Study on a Cloud.” It contains 1) survey data, 2) data collection methods, 3) sample screenshots of field notes, and 4) sample screenshots of online practicum. The participants’ interview content and reflection entries cannot be exposed to the public under the ethics guidelines of National Cheng Kung University Human Research Ethics Committee in Taiwan.
DOI: 10.17632/45w7hv53yr
title: MINERVA: A facile strategy for SARS-CoV-2 whole genome deep sequencing of clinical samples (Chen et al)

description: related article: MINERVA: A facile strategy for SARS-CoV-2 whole genome deep sequencing of clinical samples
DOI: 10.17632/6m4jz3ywhc
title: Composition of bacterial communities in the intestine, skin and spleen of farmed rainbow trout infected with Vibrio anguillarum

description: Vibrio anguillarum infection in cultured trout, besides its own harmful effects, can also make the fish more susceptible to other infections, both by swamping the host immune system and by creating the skin lesions that serve as a direct gateway for opportunistic bacteria. Samples of tissue were taken from gut, spleen, and mucus from skin lesions of cage-grown rainbow trout suffering from natural Vibrio infections of varying severity. The fish were caught by a net randomly from four neighboring cages. The animals in these cages were from the same full-sibling family batch, the same age, average weight, and were kept with the same stocking density and feeding regime. In addition, a sample of water was taken to document the planktonic bacteria inhabiting the fish farm at the time of study. Total DNA was isolated from these samples and used to produce v3-v4 SSU rRNA amplicons, which were then sequenced on Illumina MiSeq (2x300 bp) and assembled into 97% identity OTUs. Raw sequencing data deposited at NCBI SRA (project ID PRJNA828372, sequencing run IDs SRR18828104 to SRR18828151) and resulted OTU tables deposited here. Table "OTUs" provides data on the composition of bacterial communities in the spleen, skin and intestines of farmed rainbow trout infected with Vibrio anguillarum (SL-heavy infected, IP-moderately infected, AS-asymptomatic). 
The "Taxonomy" table contains a decryption of the taxonomy of these unique OTUs. The obtained 16S rRNA gene sequencing dataset allows analyzing bacteria co-colonizing skin and intestine of the infected fishes along with the pathogenic Vibrio anguillarum, as well as generally providing knowledge on the spread of bacteria between various bodily compartments in infected trout.
DOI: 10.17632/7jy4jrjhxz
title: TURKISH PRESCHOOL TEACHERS' PERCEPTIONS

description: TURKISH PRESCHOOL TEACHERS' PERCEPTIONS
DOI: 10.17632/9j2wngpdg3
title: Vehicle-bridge dynamics simulation considering inherent variability in structural properties

description: This dataset contains three sets of numerical simulations for the response of a bridge due to moving loads. The first set, named "Validation", comprises a simplified dataset to work for validation purposes. It is defined by the multiplication of axle weights and the theoretical influence line for a simply supported single girder bridge. An additive noise is added to the resulting signal. The second dataset, named "ValidationQoIVariability" , includes an inherent variability to some bridge properties (the product between elastic and section modulus is assumed to follow a lognormal distribution). Both examples are simulated considering just a single vehicle, moving at distinct speeds. Finally, the dataset named as "BridgeModel" presents a set of vehicle-bridge interaction dynamic simulation for a 15m simply supported single girder bridge according to the Euler-Bernoulli beam model. A total of 8 distinct vehicles are simulated, with 50 simulations at distinct speeds for each of them . Again, an inherent variability is considered for the bridge properties, however employing a normal distribution. The midpoint strains are available for each simulation. The units of all values are in SI.
DOI: 10.17632/b6fhzcvzmp
title: Supplementary Material: Trends and biases in peer-reviewed literature based on the relationship between South African traditional cultures and biodiversity

description: Study review sample (arranged in chronological order).