cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34808/xqgx-pt42
title: Cerebral oedema - Male, 71 - Tissue image [12030630017641381]

description: This is the histopathological image of BRAIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 71Clinical description: Autopsy: Myocardial infarction. Liver cirrhosis.
Lung interstitial haemorrhages. Diffuse alveolar damage.Gender: MaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter VI - Diseases of the nervous systemDiagnosis: Cerebral oedemaResult of the histopathological examination: In a sample from the brain, passive congestion of the terminal circulatory system and a slight edema.Sample:Material: FFPECollecting method: Autopsy specimenTopography: EYE, BRAIN AND OTHER PARTS OF CENTRAL NERVOUS SYSTEMOrgan: BRAINTissue: CerebrumType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/c4g3-h784
title: Ganglioneuroma - Female, 32 - Tissue image [9270729565556151]

description: This is the histopathological image of RETROPERITONEUM AND PERITONEUM tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 32Clinical description: History of ganglioneuroma. Tumor of retroperitoneal space.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: NEUROEPITHELIOMATOUS NEOPLASMSDiagnosis: GanglioneuromaResult of the histopathological examination: Ganglioneuroma- intraoperative examination.Sample:Material: FFCollecting method: Surgical specimenTopography: RETROPERITONEUM AND PERITONEUMOrgan: RETROPERITONEUM AND PERITONEUMTissue: RetroperitoneumType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/grn6f8
title: Myodes glareolus - 51249, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1966-02-28, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/7exa-6h80
title: Embryonal carcinoma, NOS - Male, 30 - Tissue image [10100730045413791]

description: This is the histopathological image of SMALL INTESTINE tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 30Clinical description: History of seminoma.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: GERM CELL NEOPLASMSDiagnosis: Embryonal carcinoma, NOSResult of the histopathological examination: Metastasis of embryonal carcinoma to ileum (CKAE1/AE3+, CAM 5.2+, CD30+, OCT4+, CD117+, PLAP-).Sample:Material: FFPECollecting method: Surgical specimenTopography: DIGESTIVE ORGANSOrgan: SMALL INTESTINETissue: IleumType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/b8p1-gs17
title: Neuroblastoma, NOS - Female, 1 - Tissue image [5190730046622371]

description: This is the histopathological image of ADRENAL GLAND tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 1Clinical description: Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: NEUROEPITHELIOMATOUS NEOPLASMSDiagnosis: Neuroblastoma, NOSResult of the histopathological examination: Sample:Material: FFPECollecting method: Surgical specimenTopography: THYROID AND OTHER ENDOCRINE GLANDSOrgan: ADRENAL GLANDTissue: Adrenal gland, NOSType of staining: positive/IHCStaining: Not applicableAntibody: s100Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/r4we-hx23
title: Polyp of corpus uteri - Female, 36 - Tissue image [7260729594498441]

description: This is the histopathological image of CORPUS UTERI tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 36Clinical description: Endometrial polyp on ultrasound.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XIV - Diseases of the genitourinary systemDiagnosis: Polyp of corpus uteriResult of the histopathological examination: Polyp of corpus uteri- lesion composed of cystically dilated glands with fibrous stroma containing thick walled blood vessels.Sample:Material: FFPECollecting method: Excision of lesionsTopography: FEMALE GENITAL ORGANSOrgan: CORPUS UTERITissue: EndometriumType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/xx1252
title: Myodes glareolus - 28762, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1962-08-17, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/pmve-an74
title: Tubal pregnancy - Female, 30 - Tissue image [4080730008365541]

description: This is the histopathological image of OTHER AN UNSPECIFIED FEMALE GENITAL ORGANS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 30Clinical description: Tubal pregnancy.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XV - Pregnancy, childbirth and the puerperiumDiagnosis: Tubal pregnancyResult of the histopathological examination: Tubal pregnancy.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: OTHER AN UNSPECIFIED FEMALE GENITAL ORGANSTissue: Fallopian tubeType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/vres-5710
title: Oligodendroglioma, NOS - Unknown, 37 - Tissue image [3290730016641851]

description: This is the histopathological image of BRAIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 37Clinical description: Tumor with the morphology of a high-differentiated glioma of the superior frontal cortex
Fragments measuring 4x3.5x2.8 cm of cream-colored, soft surface. The brain fragment is seen in the material. The tumor measures approximately 3x2x1 cm.Gender: UnknownDiagnosis:Classification: ICD-O_3.2Classification code: GLIOMASDiagnosis: Oligodendroglioma, NOSResult of the histopathological examination: Diffuse low glioma consistent with Oligodendroglioma(WHO G II).Immunohistochemically: GFAP (+), Olig2 (+), vimentin (-) in some cells, IDH1/R132H (+), p53 (-), Ki67 up to 5%. Molecular testing for the presence of 1p/19q codeletion is recommended.Sample:Material: FFPECollecting method: Surgical specimenTopography: EYE, BRAIN AND OTHER PARTS OF CENTRAL NERVOUS SYSTEMOrgan: BRAINTissue: Frontal lobeType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.6084/m9.figshare.19582069.v1
title: CSV version of CDCDB from 12.4.2022

description: CDCDB created on 12.4.2022, CSV version. These files contain the same information as the Sqlite file
DOI: 10.6084/m9.figshare.17081123
title: CDCDB description

description: Readme CDCDB is made of the following tables; the tables are visualized in the file CDCDB_schema.png: • aact_combs - drug combinations found in AACT, these drug combinations appeared in clinical trials: clinicalTrials.gov • aact_combs_with_identifiers - similar to aact_combs, but contains the identifiers of the drug in identifiers_entity column. In identifiers_entity, -1 indicates null, the first value is the drugbank_ID, and the second value is the PubChemID of the intervention. • all_combs_unormalized - Contains all of the drug combinations found in CDCDB from any of the sources. The table is an unnormalized version, which means that the combinations are represented in parenthesis. Multiple names which appear in the inner parenthesis of the 'drugs' column are different names used for the same intervention in the original data. The table also contains the identifiers of the interventions and their origin. • conditions - conditions associated with the clinical trials, the trials list can be found in the tables 'trials' • design_group - the design groups (arms ) of the clinical trials, the trials list can be found in the tables 'trials' • mesh_terms - mesh terms associated with the clinical trial, the trials list can be found in the tables 'trials'. This data is collected directly from AACT and not processed by CDCDB. • orangebook_combs - drug combinations curated from the FDA's orange book. The table also contains drug identifiers. • patents_ipc - list of patents and their International Patent Category (IPC) consisting CDCDB. • patents_metadata - metadata describing the patents. • References - references for the clinical trials used in CDCDB. This data is curated from AACT. • transformed_patents_drug - list of drug combinations that appeared in patents, including the drug identifiers. • trials - the list of clinical trails and metadata about them. It was collected from AACT. • web_preview - a simplified representation of CDCDB is provided in the table. Also available using non-programmatic access through our website. The table contains all of the combinations of drugs that appeared in any of the sources used to create CDCDB. The drugs are described using their name, DrugBank ID, and PubChem ID.
DOI: 10.6084/m9.figshare.17081123.v1
title: CDCDB description

description: Readme CDCDB is made of the following tables; the tables are visualized in the file CDCDB_schema.png: • aact_combs - drug combinations found in AACT, these drug combinations appeared in clinical trials: clinicalTrials.gov • aact_combs_with_identifiers - similar to aact_combs, but contains the identifiers of the drug in identifiers_entity column. In identifiers_entity, -1 indicates null, the first value is the drugbank_ID, and the second value is the PubChemID of the intervention. • all_combs_unormalized - Contains all of the drug combinations found in CDCDB from any of the sources. The table is an unnormalized version, which means that the combinations are represented in parenthesis. Multiple names which appear in the inner parenthesis of the 'drugs' column are different names used for the same intervention in the original data. The table also contains the identifiers of the interventions and their origin. • conditions - conditions associated with the clinical trials, the trials list can be found in the tables 'trials' • design_group - the design groups (arms ) of the clinical trials, the trials list can be found in the tables 'trials' • mesh_terms - mesh terms associated with the clinical trial, the trials list can be found in the tables 'trials'. This data is collected directly from AACT and not processed by CDCDB. • orangebook_combs - drug combinations curated from the FDA's orange book. The table also contains drug identifiers. • patents_ipc - list of patents and their International Patent Category (IPC) consisting CDCDB. • patents_metadata - metadata describing the patents. • References - references for the clinical trials used in CDCDB. This data is curated from AACT. • transformed_patents_drug - list of drug combinations that appeared in patents, including the drug identifiers. • trials - the list of clinical trails and metadata about them. It was collected from AACT. • web_preview - a simplified representation of CDCDB is provided in the table. Also available using non-programmatic access through our website. The table contains all of the combinations of drugs that appeared in any of the sources used to create CDCDB. The drugs are described using their name, DrugBank ID, and PubChem ID.
DOI: 10.6084/m9.figshare.19582069
title: CSV version of CDCDB from 12.4.2022

description: CDCDB created on 12.4.2022, CSV version. These files contain the same information as the Sqlite file
DOI: 10.6084/m9.figshare.19582072
title: Sqlite version of CDCDB from 12.4.2022

description: CDCDB created on 12.4.2022, Sqlite version. This file contains the same information as the CSV files
DOI: 10.6084/m9.figshare.19582072.v1
title: Sqlite version of CDCDB from 12.4.2022

description: CDCDB created on 12.4.2022, Sqlite version. This file contains the same information as the CSV files
DOI: 10.34808/a9pr-pe89
title: Bronchus or lung, unspecified - Male, 72 - Tissue image [12020630021662591]

description: This is the histopathological image of BRONCHUS AND LUNG tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 72Clinical description: Autopsy. Lung cancer. Pneumonia. Myocardial infarction. Shock.Gender: MaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter II - NeoplasmsDiagnosis: Bronchus or lung, unspecifiedResult of the histopathological examination: Non-small cell lung  adenocarcinoma with pleomorphism, with numerous giant cells. Moreover, the lung exhibits diffuse purulent pleumonia with partial organization, accompanied by severe intra-alveolar edema and emphysema. Local lymphnode free of metastasis, but with signs of anthracosis.Sample:Material: FFPECollecting method: Autopsy specimenTopography: RESPIRATORY SYSTEM AND INTRATORACIC ORGANSOrgan: BRONCHUS AND LUNGTissue: Lung, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/ayoqad
title: Myodes glareolus - 150522, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1985-05-25, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/5fxa-7102
title: Lobular carcinoma, NOS - Female, 64 - Tissue image [4160730022768461]

description: This is the histopathological image of BREAST tissue sample obtained in University of Warmia and Mazury in Olsztyn and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 64Clinical description: Breast tumor.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: DUCTAL AND LOBULAR NEOPLASMSDiagnosis: Lobular carcinoma, NOSResult of the histopathological examination: Lobular carcinoma of the breast G2.Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Upper-outer quadrant of breastType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: University of Warmia and Mazury in Olsztyn
DOI: 10.48370/ofd/i5ij1n
title: Myodes glareolus - 93762, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1970-09-18, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/epvg-y622
title: Neuroendocrine tumor, grade 2 - Female, 41 - Tissue image [8150730005222561]

description: This is the histopathological image of PANCREAS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 41Clinical description: Tumor of pancreas.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Neuroendocrine tumor, grade 2Result of the histopathological examination: Neuroendocrine tumor G2: Mitotic index: 2 mitoses per 10 HPF. Ki-67 1%. SYN+, CHR+, CK7-.
Lymph node with NET metastasis is present.
Synaptophysin: positive cytoplasmic reaction.Sample:Material: FFPECollecting method: Surgical specimenTopography: DIGESTIVE ORGANSOrgan: PANCREASTissue: Head of pancreasType of staining: positive/IHCStaining: Not applicableAntibody: SynaptophysinTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.5281/zenodo.6573588
title: Magnetic Induced Injection on a UAV Recorded using HEIST

description: Test on for inducing 13.56 MHz EMI into a UAV. The noise is recorded using HEIST. https://github.com/MaSkr09/heist_datalog.git
DOI: 10.34808/8dep-xn77
title: Non-invasive follicular thyroid neoplasm with papillary-like nuclear features (NIFTP) - Female, 67 - Tissue image [11010630088569271]

description: This is the histopathological image of THYROID GLAND tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 67Clinical description: 6 x 7 mm hypoechoic tumor in right thyroid lobe. FNAB: suspicion of papillary thyroid carcinoma (Bethesda V).Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Non-invasive follicular thyroid neoplasm with papillary-like nuclear features (NIFTP)Result of the histopathological examination: Non-invasive follicular thyroid neoplasm with papillary-like nuclear features (NIFTP): CK19+ in some cells, HBME1+, thyreoglobulin +, Galectin 3+ in some cells, CD56-.Sample:Material: FFPECollecting method: Surgical specimenTopography: THYROID AND OTHER ENDOCRINE GLANDSOrgan: THYROID GLANDTissue: Thyroid, NOSType of staining: positive/IHCStaining: Not applicableAntibody: THYTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.5281/zenodo.6573587
title: Magnetic Induced Injection on a UAV Recorded using HEIST

description: Test on for inducing 13.56 MHz EMI into a UAV. The noise is recorded using HEIST. https://github.com/MaSkr09/heist_datalog.git
DOI: 10.34808/b88x-1e78
title: Neuroendocrine tumor, grade 2 - Male, 74 - Tissue image [8160730027006281]

description: This is the histopathological image of SMALL INTESTINE tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 74Clinical description: 1,0 x 0,8 x 0,4 cm polyp of duodenum.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Neuroendocrine tumor, grade 2Result of the histopathological examination: NET G2: Mitotic index: 1 mitosis per 10 HPF. Ki-67 3%. SYN+, CHR+. CKAE1/AE3+. Incomplete excision.Sample:Material: FFPECollecting method: Excision of lesionsTopography: DIGESTIVE ORGANSOrgan: SMALL INTESTINETissue: DuodenumType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/dnvb6i/amca6q
title: FMW Botryobasidium subcoronatum (Hӧhn. & Litsch.) Donk. M-3393 (2).JPG

description: :unav
DOI: 10.34808/kfkp-s145
title: Sinonasal papilloma, inverted - Male, 61 - Tissue image [8160730027018751]

description: This is the histopathological image of ACCESSORY SINUSES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 61Clinical description: Tumor of nasal cavity and left maxillary sinus.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: TRANSITIONAL CELL PAPILLOMAS AND CARCINOMASDiagnosis: Sinonasal papilloma, invertedResult of the histopathological examination: Sinonasal papilloma, inverted: endophytic growth of epithelial nests with smooth outer contour. Hyperplastic epithelium. Transmigrating neutrophils and neutrophilic microabscesses are present. Stroma with focal edema and chronic inflammation.Sample:Material: FFPECollecting method: Surgical specimenTopography: RESPIRATORY SYSTEM AND INTRATORACIC ORGANSOrgan: ACCESSORY SINUSESTissue: Maxillary sinusType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/8juizd
title: Myodes glareolus - 3865, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1953-10-06, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/09rm-yb26
title: Liver cell carcinoma - Male, 8 - Tissue image [9070730015337531]

description: This is the histopathological image of LIVER AND INTRAHEPATIC BILE DUCTS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 8Clinical description: Tumour of the liver  left lobeGender: MaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter II - NeoplasmsDiagnosis: Liver cell carcinomaResult of the histopathological examination: Tumor of the left lobe of the liver after chemotherapy with weaving a Hepatocellular Neoplasm-NOS. Within the tumor the presence of diffuse areas of necrotic-resorptive lesions, granulation, fibrosis and hyalinisation of the stroma.Sample:Material: FFPECollecting method: Surgical specimenTopography: DIGESTIVE ORGANSOrgan: LIVER AND INTRAHEPATIC BILE DUCTSTissue: LiverType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk