cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16864276.v1
title: AHOI v22.01

description: AHOI (Adjusted Hydrography Optimal Interpolation) is a simple physical-statistical model developed in the Thünen Institute of Sea Fisheries to produce monthly gridded in situ hydrography through various decades. The present version 22 includes not only the North Sea but almost the complete Baltic Sea as well. This run is from 1948 to 2020. The data is in netCDF format, one file per month. If you use these data, please quote them with a sentence like: <br><br>“Temperature and/or salinity were obtained from a recent run of the Adjusted Hydrography Objective Interpolation (AHOI; Núñez-Riboni and Akimova, 2015)".<br><br>Núñez-Riboni, I. and Akimova A, 2015. Monthly maps of optimally interpolated in situ hydrography in the North Sea from 1948 to 2013. Journal of Marine Systems 151:15-34.
DOI: 10.6084/m9.figshare.19358747.v1
title: Supplementation with N-carbamoylglutamate during the transition period improves the function of neutrophils and reduces inflammation and oxidative stress in dairy cows

description: The ingredients of the diets, incidence of several diseases and the primers of key genes
DOI: 10.6084/m9.figshare.21127795.v1
title: data.zip

description: The data explored the role of avoidance-motivational intensity in modulating the effect of negative affect on different processes of verbal and spatial working memory.
DOI: 10.6084/m9.figshare.22197751.v1
title: Supplementary Table 1 from Host shift and natural long-distance dispersal to an oceanic island of a host-specific parasite

description: The parasite divergence rates and associated 95% confidence intervals used in this study along with the observed nucleotide divergence for each mitochondrial gene assessed and the corresponding estimated divergence times and confidence intervals.
DOI: 10.6084/m9.figshare.24112359.v1
title: Diagnostic sites for human contamination test in great apes (updated version)

description: Diagnostic sites for a human contamination test (https://github.com/kuhlwilm/HuConTest). These are defined as sites in the genome (version hg19) where most high-coverage individuals from the three great ape species complexes (<i>Pan</i>, <i>Gorilla</i>, <i>Pongo</i>) differ from modern humans. The script for using it is listed in GitHub (https://github.com/kuhlwilm/HuConTest), a short report on the application in the GBE journal (https://doi.org/10.1093/gbe/evab117).
DOI: 10.6084/m9.figshare.17299142.v1
title: Data.zip

description: data from Bolkan, Stone, et al (2022). code to process and regenerate all figures can be found at: https://github.com/ssbolkan/BolkanStoneEtAl.git and https://github.com/irisstone/glmhmm.git<br><br><br>CONTENTS (12.8GB zipped, 21.9GB unzipped)<br>(1) DMS_AoE_GLMHMM_states.mat (multi-field structured arrays of concatenated trial-by-trial behavioral data for DMSD1 and DMSD2 mice performing accumulation of evidence task, including 3-state GLM-HMM state index and state probabilities)<br>(2) OffOn_TasksOrGroup_all.mat (multi-field structured arrays of concatenated trial-by-trial behavioral data for DMSD1, DMSD2, DMSCtrl, NACD1, NACD2, NACCtrl mice performing evidence accumulation (_aoe), no distractors (_nd) or permanent cues (_pc) tasks)<br>(3) rtPPdata.mat (real time conditioned place preference data)<br>(4) runningWheelSpikes.mat (multi-field structured array for 110 single-units recorded in DMS from D1R-Cre or D2R-Cre mice expressing AAV5-DIO-NpHR, receiving laser sweeps while head-fixed over a running wheel)<br>(5) taskShapingData.mat (summary of AoE, no distractors, or permanent cues task shaping, basic performance metrics x day)<br>(6) virtualCorridor.mat (multi-field structured arrays of concatenated trial-by-trial behavioral data for DMSD1, DMSD2 and DMSCtrl mice navigating a virtual corridor)<br>(7) four .xls files summarizing stereological quantification of D1R/D2R in situ hybridization expression in A2a/D2R/D1R-Cre mouse lines<br>*******************************************************************For a more detailed explanation of data files see: <br>https://github.com/ssbolkan/BolkanStoneEtAl/blob/main/Code/utility/logExplanation.m<br><br>https://github.com/ssbolkan/BolkanStoneEtAl/blob/main/Code/utility/spikeDataAll_Explanation.m<br><br>or contact: scott bolkansbolkan AT princeton DOT edu*******************************************************************
DOI: 10.6084/m9.figshare.23906130.v1
title: Phylogenetic analysis files for RNA viruses of parasitic nematodes.

description: Sequence alignment of the Brugia malayi RNA Virus 1 and Onchocerca volvulus RNA Virus 1 groups, using the "Hepe-Virga" and "Mono-Chu" clade alignments from Shi et al. 2016 as a base respectively. Both alignments were supplemented by sequences from Dheilly et al. 2022. The identified RdRP sequences from this study were then added to these alignments based on their putative virus orders. Additional RdRP sequences from viruses of flatworms that were more than 50% complete (less than 50% of identified amino acids were ‘X’) were also added for completeness, with all sequences re-aligned using MAFFT (v.7.505) using the E-INS-I strategy. Uninformative parts of the sequence were then removed using Trimal (v1.2rev59), with the gappyout strategy specified. The final alignment was then used for phylogenetic analysis using IQTree (v.1.6.1) at 1000 non-parametric bootstraps. ModelFinder was also used to identify the best evolutionary model for BMRV1 and OVRV1 (LG+F+I+G4 for all).The above method was also used to generate full phylogenetic trees for viruses identified as part of the Bunyavirales (best-determined evolutionary model LG+F+I+G4), Durnavirales (LG+F+G4), Flavivirus (LG+I+G4), Ghabrivirales (LG+G4), Jingchu-Monovirales (LG+F+I+G4), Martellivrales (LG+F+I+G4), Picornavirales (LG+F+I+G4), Qinviridae (LG+I+G4), and Reovirales (LG+F+I+G4) groups.The uploaded sequence alignments (fasta file format) are those used by IQTree to build the final phylogenetic tree. The newick-formatted treefiles for all aforementioned viruses are also available (nwk file format).
DOI: 10.6084/m9.figshare.27245517.v1
title: IMU Data

description: The IMU data section contains raw data obtained from inertial measurement units (IMUs) placed on different body segments of individuals during walking trials. The data is organized into sub-folders corresponding to each subject, and within each sub-folder, there are multiple files representing the IMU data captured from various sensor locations. These files typically include measurements of:Orientation Quaternions: Representing the orientation of the IMU in 3D space.Acceleration: Linear acceleration in three axes (x, y, z) Angular Velocity: Rotational velocity around three axes (x, y, z) Magnetic Field: Readings from the magnetometer.The specific files and sensor locations may vary depending on the experimental setup and research objectives. The IMU data serves as the primary input for subsequent processing and analysis, including gait event detection, kinematic calculations, and developing machine learning models for gait analysis.
DOI: 10.6084/m9.figshare.726148.v1
title: Gaussian Job Archive for C26H22N2O4Pd2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.8183063.v1
title: S1 File. BOLD and GenBank output for samples used in statistical analyses (insects, n=17; macro-fungi, n=14; plants 2-loci, n=53; plants 4-loci, n=28).

description: BOLD and GenBank output for samples used in statistical analyses (insects, n=17; macro-fungi, n=14; plants 2-loci, n=53; plants 4-loci, n=28). <br>
DOI: 10.17632/b4wpjbttbh
title: From Cultural Self-Awareness to New Liberal Arts: The Development of Cultural Awareness Scale Based on Chinese Graphic Design Education

description: This study developed the Cultural Self-Awareness Scale (CSAS) based on graphic design to address the lack of cultural awareness assessment tools in art and design field, providing a reference for the cultivation and evaluation of cultural awareness in the field. This instrument consists of two parts, the first part is cultural understanding and learning characteristics with single-choice questions. The first part involves Part A: Basic Status (A01-A07) and Part B: Learning Status (B08-B14). The second part is the Cultural Self-Awareness Scale (CSAS), a 5-point Likert scale according to the level of agreement (1 = strongly disagree; 5 = strongly agree). The scale (C15-C41) is constructed based on Fei Xiaotong's theory of Cultural Self-Awareness (CSA) and involves five dimensions: Cultural Cognition, Cultural Identity, Cultural Reflection, Cultural Comparison, and Cultural Innovation. The file is the original data for the above two parts of the survey instrument.
DOI: 10.17632/p63pgr2hb9
title: PCM mechanical properties

description: Polymer composite materials (PCMs) are multi-component materials whose reinforcing and binding fillers possess significantly different physical and chemical properties. Mechanical properties are one of the most important indicators that can affect the entire life cycle of PCMs. Experimental measurements are the most common and classical approach to studying the mechanical properties of PCMs; however, they require significant time and money. Considering the resource intensity and duration of the empirical measurement processes of PCM properties, as well as the necessity to determine such properties to meet the high requirements of PCM production, the aim of this work was to create a method for predicting the main properties of PCMs based on machine learning algorithms.
During the study, a dataset was obtained, including information about empirically measured mechanical properties of PCMs, manufacturing technology, binding properties, main fabric properties, main thread properties (warp), and main thread properties (weft). Using the obtained dataset, a machine learning model based on the LASSO algorithm was trained to predict the mechanical properties of PCM using information about manufacturing technology, binding properties, main fabric properties, main thread properties (warp), and main thread properties (weft). The LASSO algorithm demonstrated a high R2 value, reaching 96%. These results indicate the potential application of this algorithm in further research and its important practical significance for improving the processes and quality of manufacturing new PCMs.
DOI: 10.6084/m9.figshare.19783591.v1
title: GOR-Source data.zip

description: The data that support the findings of the study of promoting biomass electrooxidation via modulating proton and oxygen anion (de)intercalation in hydroxide
DOI: 10.6084/m9.figshare.21257547.v1
title: Raw Data for Nature manuscript 2022-05-07139B

description: <strong>Raw Data for Nature manuscript 2022-05-07139B</strong>
DOI: 10.6084/m9.figshare.22348063.v2
title: Haplotype of the tRNAleu-COII intergenic mitochondrial DNA locus in Apis mellifera populations in Russia

description: DNA sequences of tRNAleu-COII locus of mtDNA in Russian Apis mellifera populations. All haplotypes M belong to haplogroups M17 and M4'.
DOI: 10.6084/m9.figshare.23460812.v1
title: SELF-THINNING_IDENT_MTL

description: The data set is associated with the publication "<strong>Functional diversity and identity influence the self-thinning process in young forest communities</strong>" by Urgoiti, Messier, Keeton, Belluau, and Paquette. It provides data regarding the basal area, stand density, mortality, and quadratic mean diameter, at plot level per year from the IDENT experiment of Montreal from 2009 to 2019. Information about block, plot, and species richness is also given.
DOI: 10.6084/m9.figshare.28714355.v1
title: Results of the determination of the PI curve for <i>Chlorella vulgaris</i> NIES 227 in exponential growth phase

description: This folder contains data sets recording dissolved oxygen concentration evolution accoring to time and light during oxymetric experiments of Chlorella vulgaris NIES 227 in exponential growth phase.The experiment is decribed in the publication "<i>Toward a scalable modelling of photosynthetic carbon assimilation and partition during nitrogen starvation for the microalga </i><i>Chlorella vulgaris</i><i> NIES 227</i>".The R code associated to the analysis of this dataset as described in the publication aforementioned is available at the URL <i>https://github.com/pchambonn/Toward-a-scalable-modelling-of-photosynthetic-carbon-assimilation-and-partition/tree/main</i>.
DOI: 10.6084/m9.figshare.3528830.v1
title: Appendix A. Tables with parameter values and equations used for the physiologically structured population model of perch (Perca fluviatilis) and its resource.

description: Tables with parameter values and equations used for the physiologically structured population model of perch (Perca fluviatilis) and its resource.
DOI: 10.6084/m9.figshare.805146.v15
title: P.ISSST 2013 - Proceedings of the International Symposium Sustainable Systems and Technologies, v1 (2013)

description: Proceedings of the International Symposium on Sustainable Systems and Technologies (ISSN 2329-9169) is published annually by the Sustainable Conoscente Network. Melissa Bilec and Jun-ki Choi, co-editors. ISSSTNetwork@gmail.com. ISSN 2329-9169
DOI: 10.6084/m9.figshare.9114722.v1
title: Clinical impairment scores and sagittal plane kinematics of children with cerebral palsy

description: These files accompany the article entitled "Are spasticity, weakness, selectivity, and passive range of motion related to gait deviations in children with spastic cerebral palsy? A statistical parametric mapping study" with DOI:10.1371/journal.pone.0223363. They contain retrospective data, acquired through the Clinical Motion Analysis Laboratory of the University Hospitals Leuven (Medical Ethical Committee of University Hospitals Leuven - s56036). This research project provided permission to use retrospective patient data that have been acquired during standard medical care, under the condition that all data would have been anonymized a priori, unless the patients had specifically asked to not be included in any study. Two different datasets are included from: a) children with unilateral cerebral palsy (uCP - n=167) and b) bilateral cerebral palsy (bCP - n=200). These datasets contain clinical impairment scores of spasticity, weakness, selectivity and passive range of motion measured at the level of the hip, knee and ankle joints for muscles acting in the sagittal plane, as well as the sagittal plane kinematic curves of these patients (i.e. pelvis, hip, knee and ankle joint motions). The impairment scores were inspected at a total level (i.e. composite scores, as sum of all individual impairments) or at a joint level. Statistical non-parametric mapping was used to assess: a) the relationships between the composite impairment scores and the vector of the four joints, as well as the individual joint motions and b) the relationships between the joint impairment scores and the individual joint motions. All analyses were performed separately for children with uCP and bCP. <br>
DOI: 10.17632/gpcj4b3wtk
title: Disseminated intravascular coagulation in Stevens-Johnson syndrome and toxic epidermal necrolysis

description: Supplemental information Tables: 2 Figures: 3 Supplement Table 1. Demographic data of patients with SJS/TEN enrolled in this study (n=150) Supplement Table 2. Microorganisms in SJS/TEN patients with DIC (n=32) Supplement Fig 1. Flow chart of patient enrollment in the study. Supplement Fig 2. Clinical presentation of two toxic epidermal necrolysis (TEN) patients with and without disseminated intravascular coagulation (DIC) Supplement Fig 3. Demonstration of the disseminated intravascular coagulation score in 7 deceased and 7 survived Stevens-Johnson syndrome/toxic epidermal necrolysis patients.
DOI: 10.6084/m9.figshare.19341974.v2
title: OCIM2-48L abiotic ocean carbon cycle model output

description: This dataset contains output from the OCIM2-48L model abiotic ocean carbon cycle simulations, as presented in "Atmospheric CO2 and sea surface temperature variability cannot explain recent decadal variability of the ocean CO2 sink", published by the author in Geophysical Research Letters (2022). Any use of this dataset should cite that publication. The matlab script example_figures.m loads this data and creates figures of the global air-sea CO2 flux over time and the anthropogenic CO2 column inventory in 2020.<br>
DOI: 10.6084/m9.figshare.23702478.v1
title: Exploration and Verification of Tunnel Stability Evolution Law under Jointed Rock Mass with Various Attitudes

description: This data is a numerical simulation result obtained by using Midas GTS/NX software to investigate the displacement and force pattern of surrounding rock and tunnel structure in various attitudes of joints in the background of Linpanshan Tunnel, focusing on two factors, namely, joint inclination and spacing.
DOI: 10.6084/m9.figshare.28079462.v2
title: Quality of Life Score for Experimental and Control Group (Pre and Post)

description: Due to its combination of speed, tactics and accuracy, table tennis is becoming one of the sport exercises that is suitable for the older adult. Casual play is fun and relaxing, and more serious table tennis might further skill development through focused practice. The randomized controlled trial (RCT) aimed to determine how the practice of competition compared to leisure playing affects the Quality of life (QoL) of people aged 40-70. Selecting subjects at random, one group of subjects undertook a structured competitive regimen while the other group was given time to play recreationally without any structured competition. QoL was measured before and after the intervention using WHOQOL-BREF, measuring their physical, psychological, social, and environmental domains. Data were analyzed using paired and independent t-tests. The group which received structured competition reported a marked improvement in their QoL indicators especially in physical health (p &lt; 0.001), psychological health (p &lt; 0.001), social relationships (p = 0.001) when compared to the control group that was not structured which showed few improvements. No significant differences were observed in the environmental domain for either group.
DOI: 10.60893/figshare.pof.28129601.v1
title: Datasets

description: The package contains four files : OCAE _ INPUT.pkl, OCAE _ OUTPUT.pkl, OCG _ INPUT.pkl and OCG _ OUTPUT.pkl. The first two files and the last two files are used for open channel flow with an abrupt expansion and open channel flow with a groin, respectively.
DOI: 10.6084/m9.figshare.11594691.v1
title: hour.csv

description: data from our library for advance python class
DOI: 10.6084/m9.figshare.1594697.v1
title: The 391 CELJs in China

description: The 391 CELJs are collected from various sources, and there may be few missing. Hope everyone can help me.
DOI: 10.6084/m9.figshare.24526756.v1
title: <i>Starmerella guilliamiae </i>f.a, sp. nov. and <i>Starmerella monicapupoiae </i>f.a., sp. nov. de novo assemblies

description: Four yeast isolates collected from flowers in different ecosystems in Brazil, one from fruit of <i>Nothofagus alpina </i>in Argentina, two from pods of <i>Neltuma chilensis</i> in Chile, and one obtained from the proventriculus a of female bumblebee in Canada were shown by the analysis of the sequences of the ITS region and D1/D2 domains of the large subunit of the rRNA gene to represent two novel species belonging to the genus <i>Starmerella. </i>These species are described here as <i>Starmerella gilliamiae </i>f.a, sp. nov. (CBS16166<sup>T</sup>), and <i>Starmerella monicapupoiae </i>f.a.,<i> </i>sp. nov. (CBS16165<sup>T</sup>). A phylogenomic analysis showed that <i>S. guilliamiae </i>belongs to a subclade that contains <i>S. opuntiae, S. aceti, </i>and <i>S. apicola</i>. The same analyses showed that <i>Starmerella monicapupoiae</i> is phylogenetically related to <i>S. riodocensis</i>. The two isolates of <i>Starmerella monicapupoiae </i>were obtained from flowers in Brazil and are probably vectored by insects that visit these substrates. <i>Starmerella guilliamae </i>has a wide geographical distribution having been isolated in flowers in Brazil, fruit in Argentina, plant tissues in Chile, and a bumblebee in Canada.
DOI: 10.6084/m9.figshare.25796806.v1
title: extratropical and tropical eruptions simualtion

description: WACCM simulations
DOI: 10.6084/m9.figshare.26359624.v1
title: ciac

description: Summary statistics from the Psychiatric Genomics Consortium.
DOI: 10.17632/6sfvffhtxs
title: A methyltransferase-independent role for METTL1 in tRNA aminoacylation and oncogenic transformation

description: This submission is raw imaging data for our manuscript describing the following: Amplification of chromosomal material derived from 12q13-15 is common in human cancer, and believed to result in overexpression of multiple collaborating oncogenes. To define oncogenes involved, we overexpressed genes recurrently amplified in human liposarcoma using a zebrafish model of the disease. We found several genes whose overexpression collaborated with AKT in sarcomagenesis, including the tRNA methyltransferase METTL1. This was surprising because AKT phosphorylates METTL1 to inactivate its enzymatic activity. Indeed, phosphomimetic S27D or catalytically dead alleles phenocopied the oncogenic activity of wild-type METTL1. We found that METTL1 binds the multi-tRNA synthetase complex, which contains many of the cellular aminoacyl-tRNA synthetases, and promotes tRNA aminoacylation, polysome formation and protein synthesis independent of its methyltransferase activity. METTL1-amplified liposarcomas were hypersensitive to actinomycin D, a clinical inhibitor of ribosome biogenesis. Thus, METTL1 stimulates tRNA aminoacylation and protein synthesis independent of its methyltransferase activity, and this tumor-promoting function confers susceptibility to inhibition of ribosome biogenesis.
DOI: 10.4121/uuid:6e19e9b2-4a2d-40b5-8dd3-a660bf3c0a31
title: Loophole-free Bell-inequality violation using electron spins separated by 1.3 kilometres

description: Dataset underlying the article "Loophole-free Bell-inequality violation using electron spins separated by 1.3 kilometres", published online in Nature (2015), doi:10.1038/nature15759 [Notes: Present address H. Bernien: Department of Physics, Harvard University, Cambridge, Massachusetts 02138, USA; Correspondence R. Hanson to: R.Hanson@tudelft.nl]
DOI: 10.6084/m9.figshare.12290696.v2
title: Figshare document.xlsx

description: This data is associated with the manuscript '<b>ChAdOx1 nCoV-19 vaccination prevents SARS-CoV-2 pneumonia in rhesus macaques'</b>