cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.3s8yba
title: Occurrence Download

description: A dataset containing 233 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Panama",
 "GadmGid is PAN.5_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Anartia fatima"
 ]
}

 The dataset includes 233 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054668-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25921/gnw7-cp43
title: NCCOS Mapping: Geospatial products of water depth, acoustic backscatter, and ROV data collected from NOAA Ship Nancy Foster in the Dry Tortugas, Florida Keys National Marine Sanctuary from 2021-03-18 to 2021-04-10 (NCEI Accession 0290189)

description: Multibeam and acoustic backscatter data collected from NOAA Ship Nancy Foster from 2021-03-18 to 2021-04-10. Data was collected using a Kongsberg EM2040. Bathymetry grids were created using CARIS HIPS and SIPS software, and corrected to Mean Lower Low Water (MLLW). Backscatter mosaics were created using Fledermaus Geocoder Toolbox (FMGT). Data were acquired and processed to meet IHO Order 1 specifications. Survey depths vary from 40m to 190m. Data are available in one and two meter resolutions. During the field mission, a Mohawk 18 Remotely Operated Vehicle (ROV), operated by the University of North Carolina Undersea Vehicles Program collected HD photo and ground validation video. Video data is not included with this dataset.
DOI: 10.25921/hcam-r024
title: NCCOS Assessment: Fish and benthic communities in the East End Marine Park, St. Croix, U.S. Virgin Islands from 2022-04-25 to 2022-06-18 (NCEI Accession 0290374)

description: This dataset includes fish count and benthic cover data collected at 138 sites during 2022 in East End Marine Park (EEMP), St. Croix, U.S. Virgin Islands. Fish were counted, identified to species, and sized along a transect (Menza et al. 2006, Pittman et al. 2013). Biological benthic data was collected along the transect using the line point intercept method wherein cover types were identified on hard, soft, and rubble substrates (CRCP 2022).
DOI: 10.25921/hhxz-vm91
title: Cetacean visual observations using line-transect survey methods onboard the NOAA Ship Gordon Gunter (GU) during the Atlantic Marine Assessment Program for Protected Species (AMAPPS) in the Western North Atlantic Ocean (survey GU2301) from 2023-02-04 to 2023-04-27 (NCEI Accession 0290563)

description: As part of the Atlantic Marine Assessment Program for Protected Species (AMAPPS), the Southeast Fisheries Science Center (SEFSC) conducted a shipboard survey of the U.S. waters of the Western North Atlantic (WNA) from approximately the 200m isobath out to the U.S. Exclusive Economic Zone (EEZ). The survey was conducted between February 4 and April 27, 2023 onboard the NOAA Ship Gordon Gunter, for a total of 44 days at sea split into three survey legs. Multiple days were lost due to mechanical problems with the ship (Jan 23 to Feb 2) and unfavorable weather conditions (April 8 to 10). February 3 and April 28 were departure (start survey) and arrival (end survey) days, respectively. The survey was designed for a two-team independent visual observer approach with distance sampling to estimate the detection probabilities for marine mammal sightings. A sighting constituted of a single or group of marine mammals (whales and dolphins) seen at the same location and time. This dataset includes marine mammal visual observation data and effort points with surveying conditions that can be used in abundance and density modeling per visual line-transect survey protocols. This dataset also includes opportunistic marine mammal photographs and non-marine mammal sightings such as sea turtles.
DOI: 10.25921/ktp9-0s78
title: NCCOS Assessment: Fish tracking data from East End Marine Park in St. Croix, U.S. Virgin Islands from 2019-11-08 to 2022-09-27 (NCEI Accession 0290601)

description: This dataset includes detections of fish tagged with Vemco/Innovasea acoustic transmitters in East End Marine Park (EEMP), St. Croix, US Virgin Islands from 2019 through 2022. Detection data were obtained from an array of underwater dataloggers/receivers deployed across the study area which recorded transmissions from tagged fish. Data include identifying information for each fish tag/transmitter, species tagged, timestamp of detection, and positional information for the receiver that detected the tag.
DOI: 10.25921/zahv-5m85
title: Water temperature, salinity, chlorophyll fluorescence, oxygen, transmission, and others taken by CTD, 97 casts, from the fishing vessel Bristol Explorer, Arctic EIS research cruise BE1301, with participation from NOAA AFSC, Auke Bay Lab, PMEL, EcoFOCI from 2013-08-06 to 2013-09-27 (NCEI Accession 0290790)

description: CTD profile data (97 casts) were collected in the northeast Bering Sea and Chukchi Sea from the Fishing Vessel Bristol Explorer (cruise BE1301) during the Arctic Ecosystem Integrated Survey (Arctic EIS) pelagic fish survey, August 6 to September 27, 2013. CTD casts occurred at trawl survey stations and along transactions ~15 nm apart. Northern Bering Sea (NBS), stations were from 60°N and Bering Strait; Chukchi Sea stations sat between the Bering Strait and 72.5°N. The cruise was split into 3 legs, with leg 1 sampling in the southern Chukchi Sea, leg 2 in the northern Chukchi Sea and leg 3 in the NBS.

Profile data and water samples were collected by NOAA, Alaska Fisheries Science Center (AFSC) as a part of the Ecosystems & Fisheries-Oceanography Coordinated Investigations (EcoFOCI) program in collaboration with the Pacific Marine Environmental Laboratory (PMEL). Profile variables include temperature (°C), salinity, chlorophyll fluorescence (ugrams/l), oxygen concentration (umol/kg), transmission (percent), photosynthetic available radiation (PAR, microEinsteins/m^2 s) and calculated values Sigma-T (kg m-3) and oxygen percent saturation (percent). Fewer profile variables were collected on leg 1 due to failed primary CTD and use of backup that did not contain all sensors, limiting water sampling to 4 depth. The CTD issue was solved for legs 2 & 3. On leg 3 ship flooding caused damage to freezers and loss of some discrete nutrient samples and all discrete oxygen and chlorophyll samples (see included cruise report). This data set contains 1-meter-averaged water-column profile data. Profile data from CTD instruments were processed at NOAA/PMEL/EcoFOCI using standard techniques. CTD data contacts: Phyllis Stabeno, Jeanette Gann, Ryan McCabe, Calvin Mordy, Peggy Sullivan, Shaun Bell. Scientists with the National Oceanic and Atmospheric Administration (NOAA), Alaska Fisheries Science Center (AFSC); Auke Bay Laboratories Ecosystem Monitoring and Assessment (EMA); Arctic Ecosystem Integrated Survey (Arctic Eis); Pacific Marine Environmental Laboratory (PMEL) ; Ecosystems and Fisheries-Oceanography Coordinated Investigations (EcoFOCI); University of Washington, Cooperative Institute for Climate, Ocean and Ecosystem Studies (CICOES) participated. Data are in NetCDF. Longitudes are in degW.
DOI: 10.25921/mref-de23
title: Water temperature, salinity and others taken by CTD profile data and chlorophyll and nutrients from Niskin bottle samples from NOAA Ship Oscar Dyson, fall mooring cruise DY1908, in the Bering Sea from 2019-09-20 to 2019-09-30 for NOAA AFSC, PMEL and EcoFOCI (NCEI Accession 0290966)

description: CTD profiles and Niskin bottle samples were collected on the northeast Bering Sea shelf September 20 to September 30, 2019 from the NOAA vessel Oscar Dyson (DY1908). This data set contains 1-meter-averaged water-column profile data and discrete bottle-sample data from CTD Niskin bottles. Profile data include temperature, salinity, chlorophyll fluorescence, PAR, oxygen and turbidity. Bottle-sample data include chlorophyll, and nutrients (nitrate, nitrite, phosphorus, silicate, and ammonium). CTD cast locations include a subset of the established 70-meter isobath line stations between PMEL/EcoFOCI moorings M2 (56.87 N,164.05 W) and M8 (62.20 N,174.67 W), and across Unimak Pass at Unimak Island in the Aleutian Islands, and casts at other mooring stations (see Data at NOAA, EcoFOCI web site).

Chlorophyll data were processed by NOAA, Alaska Fisheries Science Center (AFSC) using standard techniques. Profiles were processed at NOAA/PMEL EcoFOCI program using SeaBird software and standard techniques; nutrient data were also processed at NOAA,PMEL (C.W.Mordy). Data contacts: Phyllis Stabeno, Calvin Mordy, Colleen Harpold, Shaun Bell, Peggy Sullivan. Related raw profile data and underway ship data are available from NOAA/NCEI (Accession 0206459) per NOAA ship R2R program contribution.

Scientists from the National Oceanic and Atmospheric Administration (NOAA), Pacific Marine Environmental Laboratory (PMEL); Alaska Fisheries Science Center (AFSC); Ecosystems and Fisheries-Oceanography Coordinated Investigations (EcoFOCI); University of Washington, Cooperative Institute for Climate, Ocean and Ecosystem Studies (CICOES) participated.

Data are in NetCDF. Chlorophyll data are in XLSX format.
DOI: 10.25921/zc88-yk50
title: Ocean currents velocity, temperature, salinity, oxygen, turbidity and other variables collected by PMEL, EcoFOCI with NOAA, NOS support, 2010-05-19 to 2010-08-20, from 10 Southeast Alaska mooring stations at Cross Sound, Glacier Bay and Inian and Icy Passes (NCEI Accession 0291783)

description: These time-series datasets consist of Acoustic Doppler Current Profiler (ADCP) and RCM-9 current observations, and additional data from SeaBird SBE37 moored instruments at 10 locations in Southeast Alaska: three in Cross Sound, Alaska (CS-1, CS-2 and CS-3), three in Glacier Bay, Alaska (GL-1, GL-2, GL-3), and four at Inian Pass and Icy Bay (SE-1, SE-2, SE-3, SE-4). Data include current speed and direction, calculated current components U and V, temperature, salinity, pressure, oxygen concentration, calculated oxygen percent saturation and turbidity. The cruise was funded by NOAA Pacific Marine Environmental Laboratory EcoFOCI program and NOAA National Ocean Service (NOS). Instruments were deployed on summer moorings May to August, 2010 from a contract fishing vessel, F/V Harmony, cruise number CR5-10. Deployment and recovery operations on this cruise were managed by EcoFOCI personnel from NOAA/PMEL. Mooring time series data were processed at NOAA/PMEL/EcoFOCI using standard techniques. Time is recorded as UTC. Data contacts: Phyllis Stabeno, Shaun Bell, Ryan McCabe, Peggy Sullivan. Data are in NetCDF.
DOI: 10.25921/m0f6-3b26
title: NCCOS Mapping: Characterizing Benthic Habitats West of Saipan, Commonwealth of the Northern Mariana Islands (CNMI), 2018-11-05 to 2022-04-29 (NCEI Accession 0291792)

description: This data package contains information and maps showing the geology and biology of select submerged lands (0 to 40 meters deep) offshore of western Saipan, Commonwealth of the Northern Mariana Islands (CNMI). This information and maps were developed using benthic information from underwater photographs, environmental predictor variables derived from satellite imagery and bathymetry, and machine learning modeling approaches. From this process, two types of map products were created. The first type describes the spatial distribution of 5 substrate and 14 biological cover types, where each grid cell denotes the probability (0 to 100%) that a given habitat is present. The second product was a classified map depicting the 7 most common combinations of substrate and cover types (plus artificial structures). The performance and accuracy of these products were evaluated using an independent of underwater photographs. The overall accuracy of the classified map was 91.5% with user’s accuracy of individual habitat classes between 84% and 100% correct. The substrate and cover predictions had little bias (𝑥̅ error = 0.01 ±0.01 SE), good to excellent ability to discriminate between presences and absences (𝑥̅ area under the curve = 0.82 ±0.02 SE) and they explained almost a quarter of the variation in the data (𝑥̅ percent deviance explained = 23.8% ±2.9 SE).

Over 95 square kilometers (km2) of seafloor was characterized west of Saipan, CNMI. Overall, ‘Live and Upright Dead Coral Reef, Mixed Algae’ was the most abundant habitat type mapped inside and outside the Lagoon, comprising 32% (31 km2) of the area. The largest, continuous patches were located outside the Lagoon north Susupe Point, as well as inside the lagoon on the reef crest and back reef north of the harbor channel. Most live coral (all species) observations were documented outside the Lagoon from the harbor channel to Agingan Point, as well as inside the Lagoon north of Garapan. Enhalus acoroides and Halodule uninervis seagrass were both located exclusively inside the Lagoon, from Tanapag Beach south to Oleai as well as north of Tanapag to Pau Beach and south of Garapan to Agingan Point, respectively.

Endangered Species Act (ESA) protected corals (i.e., Acropora globiceps) were documented at 4 sites outside the Lagoon, located seaward of the reef crest between Susupe and Agingan Points. No nuisance species (i.e., C. vieillardi) or crown of thorns sea star (COTS) were photographed outside the Lagoon. The prevalence of coral bleaching and marine debris were also very low outside the Lagoon (&lt;0.7% and &lt;0.9%, respectively). Theses maps mark the first time that the seafloor area outside the Lagoon has been mapped since 2005, providing an updated inventory of marine resources and new baseline for future monitoring and management decisions in the region.
DOI: 10.25921/mphx-nf92
title: Nutrient, chlorophyll and other data from CTD water samples in the Bering Sea, from a NOAA Ship Oscar Dyson research cruise, DY1708, conducted for NOAA AFSC, PMEL, EcoFOCI from 2017-09-23 to 2017-10-04 (NCEI Accession 0291864)

description: This dataset contains discrete bottle-sample data from CTD casts collected for a NOAA, PMEL, EcoFOCI Fall mooring research cruise on board NOAA Ship Oscar Dyson (DY1708). The cruise spanned September 22 - October 7, 2017. CTD data collection occurred September 23 through October 4, 2017. These data are a companion set to CTD profile data from the same cruise (NCEI Accession 0211794, DOI https://doi.org/10.25921/gez4-yh74). CTD and sample locations include a subset of the established 70-meter isobath line stations between PMEL/EcoFOCI moorings M2 (56.87 N,164.05 W) and M8 (62.20 N,174.67 W), the defined "Unimak Box" at Unimak Island in the Aleutian Islands, and casts at other mooring stations including NOAA, National Marine Mammal Lab moorings and within the defined Distributed Biological Observatory (DBO-1). See NOAA DBO site for further information on DBO sampling areas, and NOAA EcoFOCI site for information on established CTD lines. Chlorophyll data were processed by NOAA, Alaska Fisheries Science Center (AFSC) using standard techniques. Nutrient data were processed at NOAA, PMEL (C.Mordy) and include nitrate, nitrite, phosphorus, silicate, and ammonium. Nutrient and chlorophyll data contacts: Calvin Mordy, Phyllis Stabeno, Colleet Harpold, Peggy Sullivan, Shaun Bell. Scientists from the National Oceanic and Atmospheric Administration (NOAA), Pacific Marine Environmental Laboratory (PMEL); Alaska Fisheries Science Center (AFSC); Ecosystems and Fisheries-Oceanography Coordinated Investigations (EcoFOCI); University of Washington, Cooperative Institute for Climate, Ocean and Ecosystem Studies (CICOES) participated in the cruise. Data are in CSV format.
DOI: 10.25921/wg96-cq17
title: NCCOS Mapping: Characterizing Submerged Lands Around Naval Base Guam, Mariana Islands, 2016-01-11 to 2022-05-13 (NCEI Accession 0292018)

description: This data package contains information and maps showing the geology and biology of select submerged lands (0 to 50 meters deep) around Navy Base Guam (NBG) and Haputo Ecological Reserve Area (ERA) Guam, Mariana Islands. This information and maps were developed using benthic information from underwater photographs, environmental predictor variables derived from satellite imagery and bathymetry, and machine learning modeling approaches. From this process, two types of map products were created. The first type describes the spatial distribution of 7 substrate and 12 biological cover types, where each grid cell denotes the probability that a given habitat is present (0 to 100%). The second product was a classified map depicting the 7 most common combinations of substrate and cover types. The performance and accuracy of these products were evaluated by local experts and by using an independent of underwater photographs. The overall accuracy of the classified map was 86.6%. The substrate and cover predictions had little bias (𝑥𝑥̅ error = ‐2% ±1% SE), good to excellent ability to discriminate between presences and absences (𝑥𝑥̅ area under the curve = 0.86 ±0.02 SE) and explained over a quarter of the variation in the data (𝑥𝑥̅ percent deviance explained = 26.9% ±5.1 SE).

In Haputo ERA, ‘Pavement, Mixed Algae’ was the most abundant habitat type, comprising 54.5% (1.1 km2) of the area. The largest, continuous patches were located on the forereef along the coastline. Live coral was distributed throughout the ERA, with encrusting corals being most prevalent. No seagrass or mangroves were present. Around NBG, ‘Sand, Bare’ was the most abundant habitat type, comprising 42.3% (8.2 km2) of the area. The largest, continuous patches were in the eastern portion of Outer Apra Harbor, including Sasa Bay and south of Cabras Island. Live coral was common and most prevalent from San Luis Point around Point Udall to Acapa Point. Halodule uninervis seagrass was only documented outside Apra Harbor at 2 sites approximately 500 m north of Acapa Point. Mangroves were found only in nearshore areas in Sasa Bay and Inner Apra Harbor. No Endangered Species Act (ESA) protected corals or nuisance species (i.e., C. vieillardi) were photographed in either project areas. One crown of thorns sea star was photographed in Haputo ERA. The prevalence of coral bleaching, COTS scarring and marine debris were low (&lt;1%, 0% and &lt;4%, respectively). Theses maps mark the first time that these locations have been mapped since 2010, providing an updated inventory of marine resources and new baseline for future monitoring and management decisions in the region.
DOI: 10.25921/98zn-f138
title: Ocean current velocity, and biophysical measurements, temperature, salinity, oxygen, turbidity, chlorophyll-a and other variables, taken by CTD during GOAA IERP by NOAA, PMEL, EcoFOCI 2013-02-01 to 2013-10-31, from 6 Southeast Alaska mooring locations at or near Cross Sound, Alaska (NCEI Accession 0292419)

description: These time-series datasets consist of Current Profiler (Teledyne ADCP and WCP, Aanderaa RCM-9) observations, and data from biophysical moorings at 6 locations in Southeast Alaska, near Cross Sound: CS1, CS2, CS3, and CS11 (ADCP and WCP locations); CS11 and CS13 (biophysical locations). Data were collected as part of the GOA IERP lower-trophic-level research effort, and include current speed and direction, calculated current components U and V, temperature, conductivity, salinity, pressure, water depth, oxygen concentration, calculated oxygen percent saturation, turbidity, raw chlorophyll fluorescence and chlorophyll a. Instrumentation included Aanderaa RCM-9 current meter, Teledyne RDI Workhorse Sentinel ADCP (WCP), Teledyne-RDI Long-Ranger 75khz ADCP (LRCP), SeaBird SBE-37 and SBE-30 profilers and WetLabs EcoFluorometers. The cruise was funded by NOAA, Pacific Marine Environmental Laboratory EcoFOCI program and the North Pacific Research Board (NPRB). Instruments were deployed in January, 2013 and recovered at the end of October, 2013 from NOAA Ship Oscar Dyson (DY1301 and DY1309, leg 2, respectively). Deployment and recovery operations on this cruise were managed by EcoFOCI personnel from NOAA/PMEL. Mooring time series data were processed at NOAA/PMEL/EcoFOCI using standard techniques. Time is recorded as UTC. Data contacts: Phyllis Stabeno, Shaun Bell, Ryan McCabe, Peggy Sullivan. Data were taken with participation from National Oceanic and Atmospheric Administration (NOAA), Pacific Marine Environmental Laboratory (PMEL), ; Ecosystems and Fisheries-Oceanography Coordinated Investigations (EcoFOCI); University of Washington, Cooperative Institute for Climate, Ocean, and Ecosystem Studies (CICOES); North Pacific Research Board (NPRB). Data are in NetCDF.
DOI: 10.25921/fw39-5g91
title: NCCOS Assessment: Chronic Turbidity Differentially Affects Physiological Processes in Two Threatened Caribbean, Atlantic Stony Coral Species from 2022-09-09 to 2022-12-06 (NCEI Accession 0292544)

description: This dataset contains results from 12-week laboratory turbidity exposures on two species of threatened stony corals, Acropora cervicornis (ACER) and Orbicella faveolata (OFAV). Experiments were conducted between 9/13/2022 and 12/6/2022. We measured endpoints (tissue regeneration, total lipids, total soluble protein, dry weight, symbiont chlorophyll a fluorescence and zooxanthellae numbers in gastrodermal tissues) and compared corals exposed to artificial seawater (control) to artificial seawater with sediment at 15 nephelometric turbidity units (NTU). We also measured sediment particle sizes within the treatment solutions. Corals were imaged throughout the exposure trials to document changes over time. Raw data are in image (.tif) format with results documented in spreadsheet format.