cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0110839.10fu
title: SH0110839.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive119101.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0110840.10fu
title: SH0110840.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive119102.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive119102.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0110841.10fu
title: SH0110841.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive119103.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive119103.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive119104.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive119104.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.fnqbyn
title: Occurrence Download

description: A dataset containing 11987 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Peromyscus maniculatus (Wagner, 1845)"
 ]
}

 The dataset includes 11987 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006299-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3711556_d2.v1
title: Additional file 11: Table S10. of Post-transcriptional regulation of fruit ripening and disease resistance in tomato by the vacuolar protease SlVPE3

description: Predicted RIN binding motifs within a 2000-bp upstream region starting from start ATG of the SlVPE3 gene coding sequence. (XLS 14Â kb)
DOI: 10.6084/m9.figshare.c.3711565_d2
title: Additional file 2: Table S3. of Genetic affinities among the historical provinces of Romania and Central Europe as revealed by an mtDNA analysis

description: List of absolute frequencies of mtDNA haplogroups and sub-haplogroups in the 24 populations and 45 populations used for the PCA and MDS analyses. (XLSX 63 kb)
DOI: 10.6084/m9.figshare.c.3711568_d1
title: MOESM1 of Selecting sequence variants to improve genomic predictions for dairy cattle

description: Additional file 1. List of variants from Run 5 of the 1000 Bull Genomes Project used in Tests 1, 2 and 3. All edited variants are listed with 1 or 0 in the final three columns indicating if the variant was used in Test 1, 2 or 3. Fields included are VariantName, Chromosome, Location, VariantType, Test_1, Test_2, and Test_3 in a space delimited file. Variant types use the 3-character codes EXN = exonic, SPL = splice site, UTR = untranslated region, UPS = upstream, DNS = downstream, SNP = other intronic or intergenic SNP, and IND = InDel.
DOI: 10.6084/m9.figshare.c.3711547_d3.v1
title: Additional file 3: Figure S2. of Syndecan-1 is a novel molecular marker for triple negative inflammatory breast cancer and modulates the cancer stem cell phenotype via the IL-6/STAT3, Notch and EGFR signaling pathways

description: Flow cytometric analysis of Syndecan-1 expression in control and Syndecan-1 siRNA transfected SUM-149 cells. 500,000 cells were stained for isotype control mouse IgG1-PE and mouse anti-human Syndecan-1 (CD138)-PE and the cells were subjected to flow cytometry. Each plot shows mouse IgG-PE control (dotted line) and CD138-PE-stained cells (solid line). The median fluorescence intensity (MFI) of events is given for each peak. Data are a single experiment representative of three independent experiments. (ZIP 281 kb)
DOI: 10.15468/dl.btmj4g
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calamus penna (Valenciennes, 1830)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 48 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039166-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3711571_d1.v1
title: Additional file 1: of 
                     â  Life at the River is a Living Hell:â   a qualitative study of trauma, mental health, substance use and HIV risk behavior among female fish traders from the Kafue Flatlands in Zambia

description: "Focus group quotes". "Interview and FG demographics". "Quotes from themes from analysis". (ZIP 60 kb)
DOI: 10.6084/m9.figshare.c.3711556_d2
title: Additional file 11: Table S10. of Post-transcriptional regulation of fruit ripening and disease resistance in tomato by the vacuolar protease SlVPE3

description: Predicted RIN binding motifs within a 2000-bp upstream region starting from start ATG of the SlVPE3 gene coding sequence. (XLS 14Â kb)
DOI: 10.6084/m9.figshare.c.3711565_d3.v1
title: Additional file 3: Table S2. of Genetic affinities among the historical provinces of Romania and Central Europe as revealed by an mtDNA analysis

description: Diversity indices and neutrality test for the Romanian historical provinces based on the HVSI and HVS II sequences. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3711547_d3
title: Additional file 3: Figure S2. of Syndecan-1 is a novel molecular marker for triple negative inflammatory breast cancer and modulates the cancer stem cell phenotype via the IL-6/STAT3, Notch and EGFR signaling pathways

description: Flow cytometric analysis of Syndecan-1 expression in control and Syndecan-1 siRNA transfected SUM-149 cells. 500,000 cells were stained for isotype control mouse IgG1-PE and mouse anti-human Syndecan-1 (CD138)-PE and the cells were subjected to flow cytometry. Each plot shows mouse IgG-PE control (dotted line) and CD138-PE-stained cells (solid line). The median fluorescence intensity (MFI) of events is given for each peak. Data are a single experiment representative of three independent experiments. (ZIP 281 kb)
DOI: 10.6084/m9.figshare.c.3711571_d1
title: Additional file 1: of 
                     â  Life at the River is a Living Hell:â   a qualitative study of trauma, mental health, substance use and HIV risk behavior among female fish traders from the Kafue Flatlands in Zambia

description: "Focus group quotes". "Interview and FG demographics". "Quotes from themes from analysis". (ZIP 60 kb)
DOI: 10.6084/m9.figshare.c.3711565_d3
title: Additional file 3: Table S2. of Genetic affinities among the historical provinces of Romania and Central Europe as revealed by an mtDNA analysis

description: Diversity indices and neutrality test for the Romanian historical provinces based on the HVSI and HVS II sequences. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3711562_d3.v1
title: Additional file 12: Table S9. of Machine learning classifier for identification of damaging missense mutations exclusive to human mitochondrial DNA-encoded polypeptides

description: Amino acid substitutions with no clear evidences of pathogenicity. Mutations are described by the polypeptide amino acid position (AA Position), wild type amino acid (WT AA), mutant amino acid (MUT AA) and affected gene (Gene). Predicted phenotype of Mitoclass.1 is included. The next four columns summarize the prediction result (P, positive/damaging; N, negative/neutral) for the four tested predictors. The last column (Count) indicates the number of predictors with the same damaging phenotype output. (XLS 31 kb)
DOI: 10.6084/m9.figshare.c.3711556_d3.v1
title: Additional file 12Table S11. of Post-transcriptional regulation of fruit ripening and disease resistance in tomato by the vacuolar protease SlVPE3

description: Primers used for quantitative RT-PCR analysis. (XLS 47Â kb)
DOI: 10.6084/m9.figshare.c.3711562_d3
title: Additional file 12: Table S9. of Machine learning classifier for identification of damaging missense mutations exclusive to human mitochondrial DNA-encoded polypeptides

description: Amino acid substitutions with no clear evidences of pathogenicity. Mutations are described by the polypeptide amino acid position (AA Position), wild type amino acid (WT AA), mutant amino acid (MUT AA) and affected gene (Gene). Predicted phenotype of Mitoclass.1 is included. The next four columns summarize the prediction result (P, positive/damaging; N, negative/neutral) for the four tested predictors. The last column (Count) indicates the number of predictors with the same damaging phenotype output. (XLS 31 kb)
DOI: 10.5522/04/28035386
title: Models and analyses for the cost-effectiveness of integrated maternal HIV, syphilis, and hepatitis B screening opt-out strategies in Nepal

description: <i>Background</i>The World Health Organisation (WHO) developed a comprehensive framework encouraging an integrated approach to achieve triple elimination of vertical transmission of HIV, syphilis, and hepatitis B in Asia. Current screening practices in Nepal show significantly lower coverage for syphilis and hepatitis B compared to HIV suggesting potential for integration. In this study, we aimed to model the cost-effectiveness of triple screening during antenatal care in Nepal.<i>Methods</i>We modelled maternal HIV, hepatitis B and syphilis cascade of care and their corresponding disease states using disease-specific Markov models over a 20-year horizon with a cycle length of one year. We compared dual integrated screening for HIV and syphilis and triple integrated screening for HIV, syphilis and hepatitis B with HIV screening only. Costs were estimated from a provider’s perspective. Results were presented as incremental cost-effectiveness ratios (ICERs). Univariable and probabilistic sensitivity analyses were conducted.<i>Findings</i>Our modelling analysis showed that dual-integrated screening for HIV and syphilis was highly cost-effective when compared to current strategy of screening for HIV only (ICERs of US$18). Triple-integrated antenatal screening for HIV, syphilis and hepatitis B was highly cost-effective compared with dual-integrated strategy with an ICER of US$114. Moreover, 100% and 98% of the probabilistic sensitivity analysis estimates for dual- and triple-integrated screening were proven cost-effective, compared to HIV-only screening.<i>Interpretation</i>Our results support WHO recommendations for implementing integrated triple antenatal screening in Nepal and Asia more broadly, aiming to reduce maternal and neonatal morbidity through early detection and intervention.
DOI: 10.5522/04/28035386.v1
title: Models and analyses for the cost-effectiveness of integrated maternal HIV, syphilis, and hepatitis B screening opt-out strategies in Nepal

description: <i>Background</i>The World Health Organisation (WHO) developed a comprehensive framework encouraging an integrated approach to achieve triple elimination of vertical transmission of HIV, syphilis, and hepatitis B in Asia. Current screening practices in Nepal show significantly lower coverage for syphilis and hepatitis B compared to HIV suggesting potential for integration. In this study, we aimed to model the cost-effectiveness of triple screening during antenatal care in Nepal.<i>Methods</i>We modelled maternal HIV, hepatitis B and syphilis cascade of care and their corresponding disease states using disease-specific Markov models over a 20-year horizon with a cycle length of one year. We compared dual integrated screening for HIV and syphilis and triple integrated screening for HIV, syphilis and hepatitis B with HIV screening only. Costs were estimated from a provider’s perspective. Results were presented as incremental cost-effectiveness ratios (ICERs). Univariable and probabilistic sensitivity analyses were conducted.<i>Findings</i>Our modelling analysis showed that dual-integrated screening for HIV and syphilis was highly cost-effective when compared to current strategy of screening for HIV only (ICERs of US$18). Triple-integrated antenatal screening for HIV, syphilis and hepatitis B was highly cost-effective compared with dual-integrated strategy with an ICER of US$114. Moreover, 100% and 98% of the probabilistic sensitivity analysis estimates for dual- and triple-integrated screening were proven cost-effective, compared to HIV-only screening.<i>Interpretation</i>Our results support WHO recommendations for implementing integrated triple antenatal screening in Nepal and Asia more broadly, aiming to reduce maternal and neonatal morbidity through early detection and intervention.
DOI: 10.6084/m9.figshare.c.3711556_d3
title: Additional file 12Table S11. of Post-transcriptional regulation of fruit ripening and disease resistance in tomato by the vacuolar protease SlVPE3

description: Primers used for quantitative RT-PCR analysis. (XLS 47Â kb)
DOI: 10.6084/m9.figshare.c.3711565_d5.v1
title: Additional file 5: Table S4. of Genetic affinities among the historical provinces of Romania and Central Europe as revealed by an mtDNA analysis

description: The Fst analyses based on the populations of Europe and Near East analyses. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.c.3712726_d9.v1
title: Additional file 8: of Analysis of triglyceride synthesis unveils a green algal soluble diacylglycerol acyltransferase and provides clues to potential enzymatic components of the chloroplast pathway

description: Phylogenetic analysis of the DGAT2 family in algae and other representative taxa. (TXT 63 kb)
DOI: 10.6084/m9.figshare.c.3712726_d9
title: Additional file 8: of Analysis of triglyceride synthesis unveils a green algal soluble diacylglycerol acyltransferase and provides clues to potential enzymatic components of the chloroplast pathway

description: Phylogenetic analysis of the DGAT2 family in algae and other representative taxa. (TXT 63 kb)
DOI: 10.6084/m9.figshare.c.3712726_d10.v1
title: Additional file 9: of Analysis of triglyceride synthesis unveils a green algal soluble diacylglycerol acyltransferase and provides clues to potential enzymatic components of the chloroplast pathway

description: Phylogenetic analysis of thiorredoxin-like ferredoxin domains in algae and other representative taxa. (TXT 101 kb)
DOI: 10.6084/m9.figshare.c.3712726_d10
title: Additional file 9: of Analysis of triglyceride synthesis unveils a green algal soluble diacylglycerol acyltransferase and provides clues to potential enzymatic components of the chloroplast pathway

description: Phylogenetic analysis of thiorredoxin-like ferredoxin domains in algae and other representative taxa. (TXT 101 kb)
DOI: 10.6084/m9.figshare.c.3712765_d1.v1
title: Additional file 10: Table S9. of Whole exome sequencing coupled with unbiased functional analysis reveals new Hirschsprung disease genes

description: Sequences and dosages of antisense morpholinos. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3712765_d1
title: Additional file 10: Table S9. of Whole exome sequencing coupled with unbiased functional analysis reveals new Hirschsprung disease genes

description: Sequences and dosages of antisense morpholinos. (XLSX 10 kb)
DOI: 10.15468/dl.w4y7up
title: Occurrence Download

description: A dataset containing 2323 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Striga hermonthica (Delile) Benth."
 ]
}

 The dataset includes 2323 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039168-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3714226_d1.v1
title: Additional file 10: of Integrated analysis of genetic, behavioral, and biochemical data implicates neural stem cell-induced changes in immunity, neurotransmission and mitochondrial function in Dementia with Lewy Body mice

description: ModuleAnnotation_enrichR_M1. Annotation result of M1 performed in enrichR. EnrichR currently contains annotated gene sets from 102 gene set libraries organized in 8 categories. Details of the gene set libraries in EnrichrR can be found in publications [25, 56]. Each tab of the file contains gene sets of a particular library that was found to be enriched in the module. The first column represent the gene set (Term), the second column shows the ratio of overlapping module genes with the gene set (Overlap), the following four columns are related to statistics (P-value, Adjusted P-value, Z-score, Combined Score) and the fifth column shows the symbols of the overlapping genes. The gene sets are ranked by combined score. (XLSX 2936Â kb)
DOI: 10.15468/dl.6xcqrw
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calamus pennatula Guichenot, 1868",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 57 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039169-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14512201
title: Data complementing the Avian influenza overview September - December 2024

description: Data complementing the Avian influenza overview September - December 2024

 

Annex A – Data on birds

The annex contains figures and tables on HPAI virus detections in birds in Europe and worldwide.

Annex B – Characteristics of the HPAI-affected poultry establishments

The annex contains a table with the characteristics of the HPAI-affected poultry establishments by affected European country submitted to ADIS between 11 September and 22 November 2024.

Annex C – Data on virus sequences

The annex contains information on authors, originating and submitting laboratories of the sequences from GISAID's EpiFlu™ Database on which this research is based. All data submitters may be contacted directly via www.gisaid.org.
description: EU; en; xlsx; BIOHAW@efsa.europa.eu
DOI: 10.5281/zenodo.14512202
title: Data complementing the Avian influenza overview September - December 2024

description: Data complementing the Avian influenza overview September - December 2024

 

Annex A – Data on birds

The annex contains figures and tables on HPAI virus detections in birds in Europe and worldwide.

Annex B – Characteristics of the HPAI-affected poultry establishments

The annex contains a table with the characteristics of the HPAI-affected poultry establishments by affected European country submitted to ADIS between 11 September and 22 November 2024.

Annex C – Data on virus sequences

The annex contains information on authors, originating and submitting laboratories of the sequences from GISAID's EpiFlu™ Database on which this research is based. All data submitters may be contacted directly via www.gisaid.org.
description: EU; en; xlsx; BIOHAW@efsa.europa.eu