cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3614780_d2
title: Additional file 2: of The prevalence of stroke and depression and factors associated with depression in elderly people with and without stroke

description: Study data. Contains the data that the present study is based on as a csv file. (CSV 287ย�kb)
DOI: 10.6084/m9.figshare.c.3614786_d1
title: MOESM1 of Protocol: a fast, comprehensive and reproducible one-step extraction method for the rapid preparation of polar and semi-polar metabolites, lipids, proteins, starch and cell wall polymers from a single sample

description: Additional file 1. Supplemental Figures and Tables.
DOI: 10.15468/dl.2q8vw7
title: Occurrence Download

description: A dataset listing the 895 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Nigeria Bird Atlas (Full Protocol Submissions)"
 ]
}

 The dataset's 895 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033501-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/435uub
title: Projeto Conexão Mata Atlântica - Monitoramento Ecossistêmico - Fauna e Flora - São Paulo - Campanha 04

description: Projeto Conexão Mata Atlântica - Monitoramento Ecossistêmico - Fauna e Flora - São Paulo - Campanha 04 (2023).
O Projeto Conexão Mata Atlântica - Recuperação de Serviços de Clima e Biodiversidade no Corredor Sudeste da Mata Atlântica Brasileira - é uma iniciativa do governo federal, por meio do Ministério da Ciência, Tecnologia e Inovações (MCTI), e dos governos dos estados de São Paulo, Minas Gerais e Rio de Janeiro, com apoio técnico e financeiro do GEF/BID. Tem como objetivo recuperar e preservar serviços ecossistêmicos associados à biodiversidade e captura de carbono da floresta, a partir de uma abordagem de manejo sustentável da paisagem na região da bacia do rio Paraíba do Sul. Atua na promoção de atividades de restauração ecológica de florestas nativas e regeneração natural, com benefícios de captura e manutenção de estoques de carbono relacionados ao uso da terra, mudança do uso do solo e silvicultura, para incremento da biodiversidade.
DOI: 10.6084/m9.figshare.c.3615005_d4
title: Additional file 1: Table S1. of Pinpointing genes underlying annual/perennial transitions with comparative genomics

description: Information on D. nemorosa, D. hispanica, A. parviflora, A. verna and A. montbretiana including their accession numbers, source locations and donor. (XLSX 186 kb)
DOI: 10.6084/m9.figshare.c.3615017_d1
title: Additional file 1: Table S1. of A metagenomic approach from aphid’s hemolymph sheds light on the potential roles of co-existing endosymbionts

description: List of primers used in this study. B: primers targeting Buchnera genus; W: primers targeting Wolbachia genus; wPn: specific primers for wPn. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3615017_d2
title: Additional file 5: Table S5. of A metagenomic approach from aphid’s hemolymph sheds light on the potential roles of co-existing endosymbionts

description: In situ hybridization probes used in this study. (XLSX 11.7 kb)
DOI: 10.17909/6ych-8r43
title: XUE-JWST
DOI: 10.6084/m9.figshare.c.3615017_d3
title: Additional file 2: Table S2. of A metagenomic approach from aphid’s hemolymph sheds light on the potential roles of co-existing endosymbionts

description: 16s rRNA gene sequences analysis. (XLSX 15.9 kb)
DOI: 10.6084/m9.figshare.c.3615059_d2
title: Additional file 1: Table S1. of Transcriptional profiling analysis of Penicillium digitatum, the causal agent of citrus green mold, unravels an inhibited ergosterol biosynthesis pathway in response to citral

description: Annotation of all Penicillium digitatum unigenes. (XLS 11070 kb)
DOI: 10.6084/m9.figshare.c.3615059_d3
title: Additional file 3: Table S3. of Transcriptional profiling analysis of Penicillium digitatum, the causal agent of citrus green mold, unravels an inhibited ergosterol biosynthesis pathway in response to citral

description: The differentially expressed genes in untreated Penicillium digitatum (CK30) and citral-treated P. digitatum (T30) (Pâ
DOI: 10.6084/m9.figshare.c.3615257_d1
title: Additional file 1 of Modelling multiple thresholds in meta-analysis of diagnostic test accuracy studies

description: R code for the main function and auxiliary functions for the described method. (TXT 43 kb)
DOI: 10.6084/m9.figshare.c.3615263_d1
title: Additional file 7: of Enrichment of extracellular vesicles from tissues of the central nervous system by PROSPR

description: Dataset 6. List of proteins identified in PROSPR-CNS-EVs that were not previously reported in EV databases. (XLS 146Â kb)
DOI: 10.6084/m9.figshare.c.3615257_d2
title: Additional file 3 of Modelling multiple thresholds in meta-analysis of diagnostic test accuracy studies

description: First example data set in txt format. (TXT 1 kb)
DOI: 10.6084/m9.figshare.c.3615266_d1
title: Additional file 1: Table S1. of Genome-wide association study to identify potential genetic modifiers in a canine model for Duchenne muscular dystrophy

description: Primer and assay information for qPCR experiments. The Gene IDs and associated Gene Names are found on the left, followed by their CFA chromosomal locations (chromosome number), and start and end positions (in bp) based on CanFam3.2. The TaqMan assays or SybrGreen primer sequences used for qPCR are presented next, along with the associated UniGene ID (where available). The remaining columns indicate which mRNA and protein sequences are associated with the investigated genes, along with the locations of the qPCR assays themselves and size of the expected amplicon. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3615257_d3
title: Additional file 2 of Modelling multiple thresholds in meta-analysis of diagnostic test accuracy studies

description: R code for application of the method to the example data. (TXT 3 kb)
DOI: 10.6084/m9.figshare.c.3615263_d2
title: Additional file 6: of Enrichment of extracellular vesicles from tissues of the central nervous system by PROSPR

description: Dataset 5. List of 72 novel identified EV proteins from CNS tissue present in whole brain proteome. List of 54 novel identified EV proteins from CNS tissue only present in EV-enriched fractions. (XLS 322Â kb)
DOI: 10.6084/m9.figshare.c.3615266_d2
title: Additional file 3: Table S3. of Genome-wide association study to identify potential genetic modifiers in a canine model for Duchenne muscular dystrophy

description: Variant Effect Predictor output for 90 SNPs found to be significantly associated with phenotypes. The legend for the table is located at the bottom of the table, along with the count numbers for each of the different variants found by Ensemblâ  s Variant Effect Predictor. Rows for different SNPs and the genes they affect are colored differently, and the font of the gene names are formatted differently, to indicate the muscle types (if any) in which that gene was investigated. (XLSX 35 kb)
DOI: 10.48366/r789637
title: Harnessing Hyperspectral Data for Ecological and Agricultural Monitoring: A Focus on Hyperion

description: This collection highlights the use of hyperspectral and multispectral data, including Hyperion and Landsat, in environmental and agricultural applications. The studies cover diverse topics such as spectral unmixing for material classification, crop health assessment, chlorophyll content estimation, and multi-temporal classification techniques. These methodologies offer valuable insights for researchers, remote sensing professionals, and students in precision agriculture, environmental monitoring, and remote sensing. The papers present advanced techniques to enhance data analysis, offering practical tools for more accurate and efficient monitoring of crops and natural resources.
DOI: 10.6084/m9.figshare.c.3615257_d4
title: Additional file 4 of Modelling multiple thresholds in meta-analysis of diagnostic test accuracy studies

description: Second example data set in txt format. (TXT 1 kb)
DOI: 10.15468/fjjc73
title: Projeto Conexão Mata Atlântica - Monitoramento Ecossistêmico - Fauna e Flora - São Paulo - Campanha 05

description: Projeto Conexão Mata Atlântica - Monitoramento Ecossistêmico - Fauna e Flora - São Paulo - Campanha 05 (2023). O Projeto Conexão Mata Atlântica - Recuperação de Serviços de Clima e Biodiversidade no Corredor Sudeste da Mata Atlântica Brasileira - é uma iniciativa do governo federal, por meio do Ministério da Ciência, Tecnologia e Inovações (MCTI), e dos governos dos estados de São Paulo, Minas Gerais e Rio de Janeiro, com apoio técnico e financeiro do GEF/BID. Tem como objetivo recuperar e preservar serviços ecossistêmicos associados à biodiversidade e captura de carbono da floresta, a partir de uma abordagem de manejo sustentável da paisagem na região da bacia do rio Paraíba do Sul. Atua na promoção de atividades de restauração ecológica de florestas nativas e regeneração natural, com benefícios de captura e manutenção de estoques de carbono relacionados ao uso da terra, mudança do uso do solo e silvicultura, para incremento da biodiversidade.
DOI: 10.6084/m9.figshare.c.3615305_d2
title: Additional file 2: Table S1. of Deciphering the mode of action of a mutant Allium sativum Leaf Agglutinin (mASAL), a potent antifungal protein on Rhizoctonia solani

description: Excel spreadsheet showing total peptides fragments used to identify proteins. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3615290_d4
title: Additional file 7: Table S2. of Phylogenetic analyses reveal molecular signatures associated with functional divergence among Subtilisin like Serine Proteases are linked to lifestyle transitions in Hypocreales

description: Functional Divergence in Subtilisin (S08.005). (XLSX 39Â kb)
DOI: 10.6084/m9.figshare.c.3615476_d8
title: Additional file 11: S4. of High-throughput mRNA and miRNA profiling of epithelial-mesenchymal transition in MDCK cells

description: List of completely novel predicted miRNAs with the information about their respective mature, star and precursor sequences, genome coordinates and read counts. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.c.3615476_d10
title: Additional file 2: S1. of High-throughput mRNA and miRNA profiling of epithelial-mesenchymal transition in MDCK cells

description: Primer assays used for validation of RNA-Seq data. (XLSX 28 kb)
DOI: 10.15468/dl.wnkrwe
title: Occurrence Download

description: A dataset listing the 6 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Antarctic Penguin Biogeography Project: Database of abundance and distribution for the Adélie, chinstrap, gentoo, emperor, macaroni, and king penguin south of 60 S"
 ]
}

 The dataset's 6 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033506-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wnh8z7
title: Occurrence Download

description: A dataset containing 207 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes albifasciatus (Macquart, 1838)"
 ]
}

 The dataset includes 207 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033508-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dub2gk
title: Occurrence Download

description: A dataset containing 1123094 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Benin"
 ]
}

 The dataset includes 1123094 records from 510 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033494-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3615767_d6
title: Additional file 7: Table S4. of Axitinib and sorafenib are potent in tyrosine kinase inhibitor resistant chronic myeloid leukemia cells

description: Anti-GAB2 IP of Imatinib, Axitinib and Sorafenib vs DMSO treated cells. SILAC ratios are normalized to GAB2. Only sites with localization probabilities greater 0.75 and Andromeda scores greater 40 are shown. PEP: posterior error probability. (XLSX 12 kb)
DOI: 10.15468/dl.6ur5kt
title: Occurrence Download

description: A dataset containing 176 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Procambarus seminolae Hobbs, 1942"
 ]
}

 The dataset includes 176 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033509-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3615767_d7
title: Additional file 4: Table S1. of Axitinib and sorafenib are potent in tyrosine kinase inhibitor resistant chronic myeloid leukemia cells

description: Anti-GAB2 IP of Imatinib vs DMSO treated cells. Experiment 1 and 2 are averages of two replicates each. SILAC ratios are normalized to GAB2 and log2 transformed. Significant affected proteins are determined using Significance A (MaxQuant, p
DOI: 10.6084/m9.figshare.c.3616007_d2
title: Additional file 3: Table S3. of Functional elucidation of the non-coding RNAs of Kluyveromyces marxianus in the exponential growth phase

description: Identification of RNA genes using Rfam data. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3616010_d2
title: Additional file 5: Table S4. of Genome-wide analysis of DNA methylation and gene expression defines molecular characteristics of Crohnâ  s disease-associated fibrosis

description: Network gene associations for WNT2B. List of genes in RNA-seq data set (bold italics) and in GeneMANIA database (italics) that interact with WNT2B are shown. (XLSX 45Â kb)
DOI: 10.25810/rgf0-a192
title: FIRED Canada Nov 2000 - July 2024

description: This is event-level polygons for the fire event delineation (FIRED) product for CANADA from November 2000  to July 2024. It is derived from the MODIS MCD64A1 burned area product (see https://lpdaac.usgs.gov/products/mcd64a1v061/ for more details). The MCD64A1 is a monthly raster grid of estimated burned dates. Firedpy (https://github.com/earthlab/firedpy) is an algorithm that converts these rasters into events by stacking the entire time series into a spatial-temporal data cube, then uses an algorithm to assign event identification numbers to pixels that fit into the same 3-dimensional spatial temporal window. This particular dataset was created using a spatial parameter of 1 pixels and 5 days. Daily polygons are included and the event identification numbers are the same for both files, but the event-level product has only single polygons for each entire event, while the daily product has separate polygons for each date per event. See the associated paper for more details on the methods and more:

Balch, J.K.; St. Denis, L.A.; Mahood, A.L.; Mietkiewicz, N.P.; Williams, T.M.; McGlinchy, J.; Cook, M.C. FIRED (Fire Events Delineation): An Open, Flexible Algorithm and Database of US Fire Events Derived from the MODIS Burned Area Product (2001–2019). Remote Sens. 2020, 12, 3498. https://doi.org/10.3390/rs12213498
DOI: 10.5281/zenodo.8288457
title: Carbonic anhydrase IV in lizard chemical signals

description: The evolution of chemical signals is subject to environmental constraints. A multicomponent signal may combine semiochemical molecules with supporting compounds able to enhance communication efficacy. Carbonic anhydrases (CAs) are ubiquitous enzymes catalysing the reversible hydration of carbon dioxide, a reaction involved in a variety of physiological processes as it controls the chemical environment of the different tissues or cellular compartments, thus contributing to the overall system homeostasis. CA-IV isoform has been recently identified by mass spectrometry in the femoral gland secretions (FG) of the marine iguana, where it has been hypothesized to contribute to the chemical stability of the signal, by regulating blend pH. Lizards, indeed, use FG to communicate by delivering the waxy secretion on bare substrate, where it is exposed to environmental stressors. Therefore, we expect that some molecules in the mixture may play supporting functions, enhancing the stability of the chemical environment, or even conferring homeostatic properties to the blend. CA-IV may well represent an important candidate to this hypothesized supporting/homeostatic function, and, therefore, we can expect it to be common in FG secretions of other lizard species. To evaluate this prediction and definitely validate CA identity, we analysed FG secretions of eight species of wall lizards (genus Podarcis), combining mass spectrometry, immunoblotting, immunocytochemistry, and transmission electron microscopy. We demonstrate CA-IV to actually occur in the FG of seven out of the eight considered species, providing an immunochemistry validation of mass-spectrometry identifications, and localizing the enzyme within the secretion mass. The predicted structure of the identified CA is compatible with the known enzymatic activity of CA-IV, supporting the hypothesis that CA play a signal homeostasis function and opening to new perspective about the role of proteins in vertebrate chemical communication.
description: Data represent the raw output of Mass Spectrometry (.wiff and .wiff2 format), compressed to save space, one file for each species, according to the following acronyms:
Podboc = Podarcis bocagei
Podcar = Podarcis carbonelli
Poderh = Podarcis erhardii
Podgai = Podarcis gaigeae
Podmel = Podarcis melisellensis
Podmil = Podarcis milensis
Podmur = Podarcis muralis
DOI: 10.5281/zenodo.8288458
title: Carbonic anhydrase IV in lizard chemical signals

description: The evolution of chemical signals is subject to environmental constraints. A multicomponent signal may combine semiochemical molecules with supporting compounds able to enhance communication efficacy. Carbonic anhydrases (CAs) are ubiquitous enzymes catalysing the reversible hydration of carbon dioxide, a reaction involved in a variety of physiological processes as it controls the chemical environment of the different tissues or cellular compartments, thus contributing to the overall system homeostasis. CA-IV isoform has been recently identified by mass spectrometry in the femoral gland secretions (FG) of the marine iguana, where it has been hypothesized to contribute to the chemical stability of the signal, by regulating blend pH. Lizards, indeed, use FG to communicate by delivering the waxy secretion on bare substrate, where it is exposed to environmental stressors. Therefore, we expect that some molecules in the mixture may play supporting functions, enhancing the stability of the chemical environment, or even conferring homeostatic properties to the blend. CA-IV may well represent an important candidate to this hypothesized supporting/homeostatic function, and, therefore, we can expect it to be common in FG secretions of other lizard species. To evaluate this prediction and definitely validate CA identity, we analysed FG secretions of eight species of wall lizards (genus Podarcis), combining mass spectrometry, immunoblotting, immunocytochemistry, and transmission electron microscopy. We demonstrate CA-IV to actually occur in the FG of seven out of the eight considered species, providing an immunochemistry validation of mass-spectrometry identifications, and localizing the enzyme within the secretion mass. The predicted structure of the identified CA is compatible with the known enzymatic activity of CA-IV, supporting the hypothesis that CA play a signal homeostasis function and opening to new perspective about the role of proteins in vertebrate chemical communication.
description: Data represent the raw output of Mass Spectrometry (.wiff and .wiff2 format), compressed to save space, one file for each species, according to the following acronyms:
Podboc = Podarcis bocagei
Podcar = Podarcis carbonelli
Poderh = Podarcis erhardii
Podgai = Podarcis gaigeae
Podmel = Podarcis melisellensis
Podmil = Podarcis milensis
Podmur = Podarcis muralis
DOI: 10.6084/m9.figshare.28025027
title: Supplementary File F (EPHPP Checklist).xlsx

description: <b>Purpose: </b>To update the evidence on the effects of financial incentives (FI) on physical activity (PA) in adults. <b>Design:</b> Systematic review and meta-analysis. Data sources: Medline, EMBASE, PsychINFO, Scopus, Web of Science, CINAHL, EconLit, SPORTDiscus, and Cochrane. <b>Methods: </b>‘Vote counting' and random-effects meta-analyses assessed short- (&lt;6 months) and long-term (&gt;6 months) FI effects, as well as impact during follow-up (incentive withdrawal). Meta-regressions examined moderator effects. Eligibility criteria for selecting studies: Randomised controlled trials (RCTs) and pilot RCTs published between June 1, 2018 and March 31, 2024 examining FI-for-PA interventions. <b>Results:</b> Twenty-nine studies (n=21 RCT, n=8 pilot RCTs; median FI size=$1.19 USD/day) involving 9604 participants were included (60.8% female, mean age=42.7 years). 17 of 21 studies reported positive short-term effects. 5 of 5 and 3 of 8 studies, respectively, reported positive long-term and follow-up effects. Among the 15 studies included in daily step count meta-analyses (most commonly reported PA outcome), FI had a moderate effect during short-term interventions (standardized mean difference [SMD] [95% CI]=0.52 [0.25-0.78], p&lt;0.001) and a small effect in follow-up (SMD [95% CI]=0.20 [0.01-0.40], p=0.04). Too few long-term studies reported daily step count to conduct pooled analyses (n=1). Meta-regressions suggest study length, incentive size, wearable device-use, and goal setting moderate FI effects (p&lt;0.05). <b>Conclusion:</b> Twenty-nine studies were identified over a 6-year span. Short-term FI interventions increase PA. The impact on daily step count is clinically significant (&gt;1000 steps/day). Key contextual factors moderate effects. Evidence is limited regarding long-term and follow-up effects.