cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4019360
title: Wikidata Dump

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0
DOI: 10.5281/zenodo.4019359
title: Wikidata Dump

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0
DOI: 10.5439/1658610
title: Direct Aerosol Forcing: Calculation from Observables and Sensitivities to Inputs

description: Understanding sources of uncertainty in aerosol direct radiative forcing (DRF), the difference in a given radiative flux component with and without aerosol, is essential to quantifying changes in Earth's radiation budget. We examine the uncertainty in DRF due to measurement uncertainty in the quantities on which it depends: aerosol optical depth, single scattering albedo, asymmetry parameter, solar geometry, and surface albedo. Direct radiative forcing at the top of the atmosphere and at the surface as well as sensitivities, the changes in DRF in response to unit changes in individual aerosol or surface properties, are calculated at three locations representing distinct aerosol types and radiative environments. The uncertainty in DRF associated with a given property is computed as the product of the sensitivity and typical measurement uncertainty in the respective aerosol or surface property. Sensitivity and uncertainty values permit estimation of total uncertainty in calculated DRF and identification of properties that most limit accuracy in estimating forcing. Total uncertainties in modeled local diurnally averaged forcing range from 0.2 to 1.3 W m-2 (42 to 20%) depending on location (from tropical to polar sites), solar zenith angle, surface reflectance, aerosol type, and aerosol optical depth. The largest contributor to total uncertainty in DRF is usually single scattering albedo; however decreasing measurement uncertainties for any property would increase accuracy in DRF. Comparison of two radiative transfer models suggests the contribution of modeling error is small compared to the total uncertainty although comparable to uncertainty arising from some individual properties.
DOI: 10.6084/m9.figshare.12932666
title: Supplementary Material for: The Association of Introducing a Faecal Calprotectin Testing Pathway for Suspected Inflammatory Bowel Disease in Primary Care and Time to Diagnosis or Treatment

description: <b><i>Background:</i></b> Primary care faecal calprotectin (FC) was introduced in Leeds in 2014 to distinguish inflammatory bowel disease (IBD) from irritable bowel syndrome and with the hope that it may reduce time to IBD diagnosis and treatment. This study examines the association of FC with referral routes, time to diagnosis, and time to treatment. <b><i>Methods:</i></b> All patients newly referred to IBD clinics in 2013 and 2016 were studied. Data on referral routes and dates, FC, date of first treatment, and proxy outcomes for disease severity were collected. <b><i>Results:</i></b> In 248 patients, there were no differences between 2013 and 2016 cohorts regarding baseline data and disease severity. The number of direct referrals to gastroenterology rose from 3% (2013) to 17% (2016), whilst 10% were diagnosed during emergency admissions. Referrals via suspected cancer pathways remained high (38% in 2013, 28% in 2016), whilst many had initial investigations at independent centres (16% in 2013, 24% in 2016). Time from referral to diagnosis was similar between 2013 (0.77 month) and 2016 (1.10 months, <i>p</i> = 0.2). A total of 48 (33.3%) patients had FC checked prior to referral, and 37.5% of these were referred directly to gastroenterology. Time from diagnosis to treatment reduced from 1.37 months (2013) to 0.72 month (2016, <i>p</i> = 0.01). <b><i>Conclusion:</i></b> Patients present via a multitude of referral pathways, but FC was associated with increased direct referrals to gastroenterology. We found a variation in time to diagnosis and treatment depending on referral routes. Further work is required to ensure patients with suspected IBD get referred to IBD services in a timely manner.
DOI: 10.5281/zenodo.4013888
title: N-ASW: Molecular Dynamics Data

description: Description The data set was generated from ab-initio molecular dynamics simulations and was used to study the adsorption and desorption dynamics of nitrogen atoms on top of amorphous solid water (ASW) [1]. The data set contains structures with 3 to 378 atoms which result in 28,715 structures in total. The atomization energies and atomic forces are calculated at the PBEh-3c/def2-mSVP level of theory [2]. For more details, see Ref. 1. Format The data is stored in python compressed array format (.npz) with the atomization energy in kcal/mol and atomic forces in kcal/mol/Ang. The data set contains five numpy arrays import numpy as np<br> data = np.load('N-ASW.npz')<br> data['R'] # Cartesian coordinates of nuclei (Ang.)<br> data['E'] # Total energy (kcal/mol)<br> data['F'] # Atomic forces (kcal/mol/Ang.)<br> data['N'] # Number of atoms in each structure<br> data['Z'] # Nuclear charges References [1] Molpeceres G.; Zaverkin V.; and Kästner J. Neural-Network Assisted Study of Nitrogen Atom Dynamics on Amorphous Solid Water. I. Adsorption & Desorption. Mon. Not. R. Astron. Soc. 2020, submitted<br> [2] Grimme S.; Brandenburg J. G.; Bannwarth C.; Hansen A. Consistent structures and interactions by density functional theory with small atomic orbital basis sets. J. Chem. Phys. 2015, 143, 054107.
DOI: 10.5281/zenodo.4020300
title: Validation of ESA CCI SM combined v05.2 vs ISMN 20191211 global

description: QA4SM validation of soil moisture data: ESA CCI SM combined v05.2 vs ISMN 20191211 global. URL: https://qa4sm.eu/result/1333c236-de5b-4835-be24-407b115c4980/. Produced on QA4SM (https://qa4sm.eu)
DOI: 10.5281/zenodo.4020299
title: Validation of ESA CCI SM combined v05.2 vs ISMN 20191211 global

description: QA4SM validation of soil moisture data: ESA CCI SM combined v05.2 vs ISMN 20191211 global. URL: https://qa4sm.eu/result/1333c236-de5b-4835-be24-407b115c4980/. Produced on QA4SM (https://qa4sm.eu)
DOI: 10.5281/zenodo.3749597
title: Preprocessed UC Berkeley Home IP Web Traces

description: This is a acommulated version of the UC Berkeley Home IP Web Traces. Unlike the original dataset this records are stored in plain text format. The source dataset was provided by Steven D. Gribble and the conversion was done by Florian Wörister. <strong>Acknowledgements</strong> Steven D. Gribble contributed the traces to the ITA. He also maintains the official UC Berkeley page dedicated to this tracing effort. For inquiries, contact Steve Gribble at <em>gribble [at] gmail [dot] com</em>. <em>These traces, documentation, and associated trace tools were created by Steve Gribble with the assistance of Armando Fox, Ian Goldberg, Eric Brewer, and Cliff Frost.</em> <strong>Restrictions</strong> Copyright (C) 1996-1997 by the Regents of the University of California. IN NO EVENT SHALL THE AUTHORS OR DISTRIBUTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OF THIS SOFTWARE, ITS DOCUMENTATION, OR ANY DERIVATIVES THEREOF, EVEN IF THE AUTHORS HAVE BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. THE AUTHORS AND DISTRIBUTORS SPECIFICALLY DISCLAIM ANY WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. THIS SOFTWARE IS PROVIDED ON AN "AS IS" BASIS, AND THE AUTHORS AND DISTRIBUTORS HAVE NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS. You have permission to use and redistribute these traces freely, as long as this Copyright and Disclaimer is distributed unmodified. If you publish any results based on these traces, please send us a copy of this publication (in electronic or print form) and give the following reference or attribution in your publication: Steven D. Gribble, "UC Berkeley Home IP HTTP Traces", July 1997. Available at http://www.acm.org/sigcomm/ITA/.
DOI: 10.6084/m9.figshare.5026643
title: New Triassic teleosts (Actinopterygii, Teleosteomorpha) from northern Italy and their phylogenetic relationships among the most basal teleosts

description: This study provides new evidence of the diversity of Middle–Late Triassic teleosts with the description of new pholidophorids from Italy. The results of the phylogenetic analysis confirm the sister-group relationship [†Aspidorhynchiformes + †Pachycormiformes] as members of Teleosteomorpha and †<i>Prohalecites</i> as the oldest teleosteomorph. The apomorphy-based Teleostei includes a new interpretation of †Pholidophoriformes as a monophyletic group supported by numerous synapomorphies and comprising two families, †Pholidophoridae and †Eurycormidae, fam. nov. The latter is only known from the Upper Jurassic of Europe. The monophyletic family †Pholidophoridae is known by about a dozen European taxa and a Middle Triassic genus (†<i>Malingichthys</i>) from southern Asia, which is the oldest member of the family. The addition of new pholidophorids provides a new interpretation of the possible relationships and taxonomic arrangements within the family †Pholidophoridae. The genera †<i>Pholidorhynchodon</i> and †<i>Eopholidophorus</i> stand as pholidophorids with a unique morphology of the upper oral margin, including a median rostral bone bearing a few large conical teeth, laterodermethmoids armed with large teeth, and the premaxillae displaced from the middle region of the oral margin. This study confirms previous hypotheses of character evolution among basal members of Teleostei, with implications for holostean character evolution. The synapomorphies shared by crown-group Teleostei appeared stepwise more than 140 million years ago over many speciation events and did not arise in a single ancestral species. The analyses of character distribution reflect the gradual accumulation of features that diagnose the crown group. http://zoobank.org/urn:lsid:zoobank.org:pub:0CBDA307-1DD5-4D18-A539-F066E7BF13DC SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Arratia, G. 2017. New Triassic teleosts (Actinopterygii, Teleosteomorpha) from northern Italy and their phylogenetic relationships among the most basal teleosts. Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2017.1312690.
DOI: 10.6084/m9.figshare.5026643.v1
title: New Triassic teleosts (Actinopterygii, Teleosteomorpha) from northern Italy and their phylogenetic relationships among the most basal teleosts

description: This study provides new evidence of the diversity of Middle–Late Triassic teleosts with the description of new pholidophorids from Italy. The results of the phylogenetic analysis confirm the sister-group relationship [†Aspidorhynchiformes + †Pachycormiformes] as members of Teleosteomorpha and †<i>Prohalecites</i> as the oldest teleosteomorph. The apomorphy-based Teleostei includes a new interpretation of †Pholidophoriformes as a monophyletic group supported by numerous synapomorphies and comprising two families, †Pholidophoridae and †Eurycormidae, fam. nov. The latter is only known from the Upper Jurassic of Europe. The monophyletic family †Pholidophoridae is known by about a dozen European taxa and a Middle Triassic genus (†<i>Malingichthys</i>) from southern Asia, which is the oldest member of the family. The addition of new pholidophorids provides a new interpretation of the possible relationships and taxonomic arrangements within the family †Pholidophoridae. The genera †<i>Pholidorhynchodon</i> and †<i>Eopholidophorus</i> stand as pholidophorids with a unique morphology of the upper oral margin, including a median rostral bone bearing a few large conical teeth, laterodermethmoids armed with large teeth, and the premaxillae displaced from the middle region of the oral margin. This study confirms previous hypotheses of character evolution among basal members of Teleostei, with implications for holostean character evolution. The synapomorphies shared by crown-group Teleostei appeared stepwise more than 140 million years ago over many speciation events and did not arise in a single ancestral species. The analyses of character distribution reflect the gradual accumulation of features that diagnose the crown group. http://zoobank.org/urn:lsid:zoobank.org:pub:0CBDA307-1DD5-4D18-A539-F066E7BF13DC SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Arratia, G. 2017. New Triassic teleosts (Actinopterygii, Teleosteomorpha) from northern Italy and their phylogenetic relationships among the most basal teleosts. Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2017.1312690.
DOI: 10.6084/m9.figshare.4868759
title: A new elasmosaurid (sauropterygia, plesiosauria) from the bearpaw shale (late cretaceous, maastrichtian) of montana demonstrates multiple evolutionary reductions of neck length within elasmosauridae

description: Plesiosauria is a diverse clade of marine reptiles that have been studied since the early 19th century. However, phylogenetic relationships within the group have been contentious due to limited taxon sampling and a misunderstanding of how ontogeny and interspecific and intraspecific variation affect character states. This is particularly true for elasmosaurids, a Cretaceous clade of long-necked plesiosaurians. In 2010, a new, nearly complete skeleton, MOR 3072, was collected from the Late Cretaceous (Campanian–Maastrichtian) Bearpaw Shale of northeast Montana. The specimen provides detailed morphological information rarely observed within Elasmosauridae, including a complete skull, the anterior 23 cervical vertebrae, a partial dorsal and caudal vertebral column, incomplete pectoral and pelvic girdles, elements of both fore- and hind limbs, ribs, and gastralia. Being early Maastrichtian in age, MOR 3072 is the stratigraphically youngest elasmosaurid known from the Western Interior Seaway and is recognized as a new genus and species, <i>Nakonanectes bradti</i>. We present a description of <i>Nakonanectes bradti</i> and conduct an extended phylogenetic analysis of Elasmosauridae. <i>N. bradti</i> is found to be deeply nested within the clade of large-bodied, long-necked, Western Interior Styxosaurinae. However, MOR 3072 is one of the smallest adult elasmosaurids ever recovered (5.1–5.6 m) and exhibits a reduced neck length compared with other North American elasmosaurids, resulting from a reduction in both centrum length and number of cervical vertebrae (39–42 were originally present). These features are convergent with the Southern Hemisphere clade of short-necked Maastrichtian elasmosaurids, Aristonectinae, and demonstrate multiple origins of short-necked body proportions from longer-necked ancestors within Elasmosauridae. http://zoobank.org/urn:lsid:zoobank.org:pub:85731F4A-EA70-4C9A-B595-792EDBC096C0 SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Serratos, D. J., P. Druckenmiller, and R. B. J. Benson. 2017. A new elasmosaurid (Sauropterygia, Plesiosauria) from the Bearpaw Shale (Late Cretaceous, Maastrichtian) of Montana demonstrates multiple evolutionary reductions of neck length within Elasmosauridae. Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2017.1278608.
DOI: 10.6084/m9.figshare.4868759.v1
title: A new elasmosaurid (Sauropterygia, Plesiosauria) from the Bearpaw Shale (Late Cretaceous, Maastrichtian) of Montana demonstrates multiple evolutionary reductions of neck length within Elasmosauridae

description: Plesiosauria is a diverse clade of marine reptiles that have been studied since the early 19th century. However, phylogenetic relationships within the group have been contentious due to limited taxon sampling and a misunderstanding of how ontogeny and interspecific and intraspecific variation affect character states. This is particularly true for elasmosaurids, a Cretaceous clade of long-necked plesiosaurians. In 2010, a new, nearly complete skeleton, MOR 3072, was collected from the Late Cretaceous (Campanian–Maastrichtian) Bearpaw Shale of northeast Montana. The specimen provides detailed morphological information rarely observed within Elasmosauridae, including a complete skull, the anterior 23 cervical vertebrae, a partial dorsal and caudal vertebral column, incomplete pectoral and pelvic girdles, elements of both fore- and hind limbs, ribs, and gastralia. Being early Maastrichtian in age, MOR 3072 is the stratigraphically youngest elasmosaurid known from the Western Interior Seaway and is recognized as a new genus and species, <i>Nakonanectes bradti</i>. We present a description of <i>Nakonanectes bradti</i> and conduct an extended phylogenetic analysis of Elasmosauridae. <i>N. bradti</i> is found to be deeply nested within the clade of large-bodied, long-necked, Western Interior Styxosaurinae. However, MOR 3072 is one of the smallest adult elasmosaurids ever recovered (5.1–5.6 m) and exhibits a reduced neck length compared with other North American elasmosaurids, resulting from a reduction in both centrum length and number of cervical vertebrae (39–42 were originally present). These features are convergent with the Southern Hemisphere clade of short-necked Maastrichtian elasmosaurids, Aristonectinae, and demonstrate multiple origins of short-necked body proportions from longer-necked ancestors within Elasmosauridae. http://zoobank.org/urn:lsid:zoobank.org:pub:85731F4A-EA70-4C9A-B595-792EDBC096C0 SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Serratos, D. J., P. Druckenmiller, and R. B. J. Benson. 2017. A new elasmosaurid (Sauropterygia, Plesiosauria) from the Bearpaw Shale (Late Cretaceous, Maastrichtian) of Montana demonstrates multiple evolutionary reductions of neck length within Elasmosauridae. Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2017.1278608.
DOI: 10.6084/m9.figshare.4896854
title: <i>Bonapartesaurus rionegrensis</i>, a new hadrosaurine dinosaur from South America: implications for phylogenetic and biogeographic relations with North America

description: The Gondwanan hadrosaurid dinosaur record is relatively poorly known and very complicated. A new hadrosaurid, <i>Bonapartesaurus rionegrensis</i>, gen. et sp. nov., from the late Campanian–early Maastrichtian of the Salitral Moreno site, Argentina, is characterized by the following combination of characters: the ratio between the height of the neural spines and that of the centrum of the sacral vertebrae greater than 3.5; neural spines of the anterior section of the caudal vertebrae extremely long and evenly expanding distally; a preacetabular process of the ilium slightly deflected ventrally, with the angle greater than 150°; the ratio between the maximum dorsoventral depth of the posterior end of the preacetabular process and the dorsoventral distance from the pubic peduncle to the dorsal margin of the ilium less than 0.50; the ratio between the dorsoventral height and anteroposterior length of the iliac blade 0.8 or greater; asymmetrical lateral profile of the supraacetabular process; the posterior portion of the postacetabular process markedly thicker mediolaterally as a result of the dorsomedial twist of the postacetabular process; an anteriorly expanded cnemial crest restricted to the proximal end of the tibia; and articular surface of the astragalus for the internal malleolus of the tibia moderately expanded medially, articulating with only part of the ventral surface of the tibial internal malleolus. Our phylogenetic analysis indicates that <i>Bonapartesaurus</i> is located within the Tribe Saurolophini. Paleobiogeographically, its presence suggests at least two saurolophine dispersal events from North America, one toward South America and another toward Asia, no later than the late Campanian. http://zoobank.org/urn:lsid:zoobank.org:pub:1ADEDB71-1FD6-4081-915D-6C73D8389408 SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Cruzado-Caballero, P., and J. Powell. 2017. <i>Bonapartesaurus rionegrensis</i>, a new hadrosaurine dinosaur from South America: implications for phylogenetic and biogeographic relations with North America. Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2017.1289381.
DOI: 10.6084/m9.figshare.4896845
title: A new specimen of <i>Lariosaurus xingyiensis</i> (Reptilia, Sauropterygia) from the Ladinian (Middle Triassic) Zhuganpo Member, Falang Formation, Guizhou, China

description: A new specimen of <i>Lariosaurus xingyiensis</i> is described and provides new information on the dermal palate of the skull and the postcranial skeleton. Based on a comprehensive comparison with the holotype specimen, an amended diagnosis of <i>L. xingyiensis</i> is given on the basis of the following features: a medium-sized species of <i>Lariosaurus</i> with jugal absent, longitudinal diameter of upper temporal fenestra about 1.7 times longitudinal diameter of orbit, retroarticular process elongate, clavicles without anterolaterally expanded corners, posterior scapular process (blade) slender and elongate, humerus distinctly shorter than femur, and dorsal process of ilium with distinct tubercular ornamentation. Two phylogenetic analyses of Nothosauridae demonstrate that <i>Nothosaurus</i> as previously conceived is not monophyletic whereas <i>Lariosaurus</i> is a monophylum. Three species previously referred to <i>Nothosaurus</i> are more closely related to <i>Lariosaurus</i> and are hereby reassigned to <i>Lariosaurus</i>, namely, <i>L. juvenilis, L. youngi</i>, and <i>L. winkelhorsti</i>. SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Lin, W.-B., D.-Y. Jiang, O. Rieppel, R. Motani, C. Ji, A. Tintori, Z.-Y. Sun, and M. Zhou. 2017. A new specimen of <i>Lariosaurus xingyiensis</i> (Reptilia, Sauropterygia) from the Ladinian (Middle Triassic) Zhuganpo Member, Falang Formation, Guizhou, China. Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2017.1278703.
DOI: 10.6084/m9.figshare.5039731
title: Redescription of <i>Szelepis</i> Liu, 1981 (Placodermi, Arthrodira), from the Lower Devonian of China

description: The skull roof of the species <i>Szelepis yunnanensis</i> (Liu, 1979) from the Early Devonian of Yunnan is redescribed, as well as other <i>Szelepis</i> material previously published. It appears that only the holotype of <i>S. yunnanensis</i> can be confidently assigned to this genus. The fusion of the preorbital plates into one plate strongly suggests the assignment of <i>Szelepis yunnanensis</i> to the monophyletic family Actinolepididae Gross, 1940, sensu stricto (comprising <i>Actinolepis</i> Agassiz, 1884, and <i>Bollandaspis</i> Schmidt, 1979). This is confirmed by a phylogenetic analysis. Hence, <i>Szelepis</i> constitutes the most ancient occurrence of the family but not the sister group to the remaining members. SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Dupret, V., M. Zhu, and J.-Q. Wang. 2017. Redescription of <i>Szelepis</i> Liu, 1981 (Placodermi, Arthrodira), from the Lower Devonian of China. Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2017.1312422.