cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25375/uct.11770374.v1
title: Kua Ruins Heritage Spatial Documentation Metadata Dataset

description: This master metadata spreadsheet documents all of the Kua ruins heritage items published by the Zamani Project. <br>The Kua ruins are all that remains of a medieval Swahili town located on Juani Island in the Mafia Archipelago. The ruins offer insights into an island civilization that saw Portuguese and Omani control as well as independence, enslavement, and eventual abandonment. Indicators of early settlement and trade—including Islamic and Chinese ceramics dating to the thirteenth and fourteenth centuries and currency from mainland Tanzania—have been found in the ruins, while Portuguese accounts from the sixteenth century note the great wealth of the Kua people. The Zamani Project spatially documented some of the Kua ruins in 2018.<br><br>The Zamani Project seeks to increase awareness and knowledge of tangible cultural heritage in Africa and internationally by creating metrically accurate digital representations of historical sites. Digital spatial data of cultural heritage sites can be used for research and education, for restoration and conservation and as a record for future generations. The Zamani Project operates as a non-profit organisation within the University of Cape Town.<br><br><i>This text has been adapted from the World Monuments Fund website</i> (https://www.wmf.org/project/kua-ruins).<br><br>All work was carried out as part of the <b>Kua Conservation Project:</b><br><b>Co-Directors:</b> Stephane Pradines (ISMC-AKU) and Pierre Blanchard (WMF).<br><b>Partner institutions:</b> Aga Khan University (AKU); Tanzanian Antiquities; World Monument Fund (WMF), Zamani Project (University of Cape Town)<br><br>Then Zamani Project contributed accurate 3D models and maps of the site and structures to the Kua Conservation Program.
DOI: 10.6084/m9.figshare.11770365.v1
title: Influence of pore structure on the properties of green concrete derived from natural pozzolan and nanosilica

description: The strength, pore structure, morphology and mineralogical composition of hydration products of natural pozzolan (NP) and nanosilica (nSiO<sub>2</sub>) based alkali activated binder (AAB) were examined. It was noted that AAB without nSiO<sub>2</sub> was relatively porous with the presence of micro-, meso- and macro-level pores. In contrast, as the proportion of nSiO<sub>2</sub> increased in the mixture, the pore structure started to refine with a reduction in the pore volume due to transformation of source material to polymeric compound, such as C-A-S-H with a higher Al absorption in the binder structure. The incorporation of 5% and 7.5% nSiO<sub>2</sub> resulted in the refinement of the pore structure due to enhanced polycondensation. Consequently, there was considerable improvement in the mechanical properties. The experimental data indicated that the pore structure evaluation through NMR has served as a tool to understand the relation between the micro- and macro-level performance of the developed AAC.
DOI: 10.17637/rh.11770269
title: CCS_2D_CSV.tar.gz

description: Data set containing .csv files for CaCO3 mass precipitated and concentrations.<br>
DOI: 10.17637/rh.11770269.v1
title: CCS_2D_CSV.tar.gz

description: Data set containing .csv files for CaCO3 mass precipitated and concentrations.<br>
DOI: 10.26180/5e3290da4fc61
title: Trade Facilitation in the Presence of Non-independent Impediments

description: Data used in paper by the same title.
DOI: 10.6084/m9.figshare.11769972
title: Predictive value of metabolomic biomarkers for cardiovascular disease risk: a systematic review and meta-analysis

description: <b>Background:</b> Metabolomic analysis aids in the identification of novel biomarkers by revealing the metabolic dysregulations underlying cardiovascular disease (CVD) aetiology. The aim of this study was to evaluate which metabolic biomarkers could add value for the prognosis of CVD events using meta-analysis. <b>Methods:</b> The PRISMA guideline was followed for the systematic review. For the meta-analysis, biomarkers were included if they were tested in multivariate prediction models for fatal CVD outcomes. We grouped the metabolites in biological classes for subgroup analysis. We evaluated the prediction performance of models which reported discrimination and/or reclassification statistics. <b>Results:</b> For the systematic review, there were 22 studies which met the inclusion/exclusion criteria. For the meta-analysis, there were 41 metabolites grouped into 8 classes from 19 studies (45,420 subjects, 5954 events). A total of 39 of the 41 metabolites were significant with a combined effect size of 1.14 (1.07–1.20). For the predictive performance assessment, there were 21 studies, 54,337 subjects, 6415 events. The average change in <i>c</i>-statistic after adding the biomarkers to a clinical model was 0.0417 (SE 0.008). <b>Conclusions:</b> This study provides evidence that metabolomic biomarkers, mainly lipid species, have the potential to provide additional prognostic value. Current data are promising, although approaches and results are heterogeneous.
DOI: 10.6084/m9.figshare.11769969
title: Alignment of LamB homologs

description: A protein-level alignment of homologs of LamB obtained from NCBI BLAST.
DOI: 10.6084/m9.figshare.11769966
title: Wild type and lamB- growth assays

description: These are spectrometer-based readings of cell growth, related to Figure 1 of the manuscript. They demonstrate that LamB expression is essential for growth in M9+maltodextrin but has a large fitness cost in LB+lambda
DOI: 10.6084/m9.figshare.11769966.v1
title: Wild type and lamB- growth assays

description: These are spectrometer-based readings of cell growth, related to Figure 1 of the manuscript. They demonstrate that LamB expression is essential for growth in M9+maltodextrin but has a large fitness cost in LB+lambda
DOI: 10.6084/m9.figshare.11769969.v1
title: Alignment of LamB homologs

description: A protein-level alignment of homologs of LamB obtained from NCBI BLAST.
DOI: 10.6084/m9.figshare.11769954
title: Sequencing alignment files

description: These are the raw sequence alignment files used to generate the counts in the raw counts files.
DOI: 10.6084/m9.figshare.11769954.v1
title: Sequencing alignment files

description: These are the raw sequence alignment files used to generate the counts in the raw counts files.
DOI: 10.6084/m9.figshare.11769948
title: Raw counts files

description: Raw counts files on which scores from the lambda selection and maltodextrin selection are based. Counts are produced by aligning fragments called from Nextera sequencing data to a wild type template and counting mismatches on a per-position basis.
DOI: 10.6084/m9.figshare.11769942
title: Individual growth assays

description: Individual growth assays for variants that were identified in the pooled sequencing assay as putatively both lambda resistant and maltodextrin competent
DOI: 10.6084/m9.figshare.11769942.v1
title: Individual growth assays

description: Individual growth assays for variants that were identified in the pooled sequencing assay as putatively both lambda resistant and maltodextrin competent
DOI: 10.6084/m9.figshare.11769939
title: Combined selection results

description: Combined results from the maltodextrin and lambda selections
DOI: 10.6084/m9.figshare.11769939.v1
title: Combined selection results

description: Combined results from the maltodextrin and lambda selections
DOI: 10.6084/m9.figshare.11769936
title: Cophylogenetic analysis of the relationship between anemonefish <i>Amphiprion</i> (Perciformes: Pomacentridae) and their symbiotic host anemones (Anthozoa: Actiniaria)

description: The association between anemonefish and anemone is a classical example of mutualism in coral reefs. Although mutualism is probably the key innovation that triggered the adaptive radiation of anemonefish into a wide range of habitats, the coevolutionary history between the groups has not been thoroughly tested in a phylogenetic framework. We examined the evolutionary history of the association via distance-based (Parafit and PACo) and event-based methods (Core-PA, Jane). Mitochondrial DNA sequences (COI mtDNA, Cytb, 16S rDNA and 12S rDNA) were used to reconstruct the phylogenies of tropical <i>Amphiprion</i> species and their host anemones by using maximum likelihood with best-fit models selected. Neither distance-based analyses nor event-based analyses revealed global significant congruence between the phylogenies of the hosts and the symbionts, and thus no evidence for coevolution between anemone-anemonefish. However, at the individual pair level, the fish showed some dependence on anemone hosts. Even though living in close association and benefiting from each other, the change of genetic composition of one species (anemonefish) does not always evolve in response to changes in the other (anemones). These findings expand our understanding of the pattern and the role of evolutionary events to allow a better prediction of the future of the anemonefish-anemone relationship.
DOI: 10.6084/m9.figshare.11769927
title: Relationship between empirical water temperature and spring characteristics of swordtip squid (<i>Uroteuthis eduli</i>s) caught in the eastern Tsushima Strait

description: We analysed the data of swordtip squid <i>Uroteuthis edulis</i> caught in the eastern Tsushima Strait, from April to September between 2012 and 2018, to consider the relationships among mantle length and body and gonad weights, associated with the estimated seasonal migratory routes and itineraries improved by the quantitative results of the tracer experiments. Our analyses have enabled us to reveal the characteristics of kensaki-type squid and the reasons for their appearance. We identified the kensaki-type <i>U. edulis</i> as male individuals, caught mainly in April–June, with long slender bodies, probably adapted to empirical duration of the cold sea water temperature in the Sea of Amakusa. Researchers and fishermen have referred to the seasonal migrating group including such males as a spring-migrating group. However, the females belonging to the spring-migrating group had no kensaki-type characteristics. Moreover, contrary to that achieved by the males, the female squid had acquired greater maturation in the spring than in any other seasons. These data demonstrated that the females continued to grow to maturation even in the cold sea waters, implying a different female strategy for reproduction from that of male squid. We are concerned that the commercially valuable kensaki-type squid may decrease in the future because the water temperature in the northern East China Sea is gradually rising, probably due to global climate change.
DOI: 10.6084/m9.figshare.11769936.v1
title: Cophylogenetic analysis of the relationship between anemonefish <i>Amphiprion</i> (Perciformes: Pomacentridae) and their symbiotic host anemones (Anthozoa: Actiniaria)

description: The association between anemonefish and anemone is a classical example of mutualism in coral reefs. Although mutualism is probably the key innovation that triggered the adaptive radiation of anemonefish into a wide range of habitats, the coevolutionary history between the groups has not been thoroughly tested in a phylogenetic framework. We examined the evolutionary history of the association via distance-based (Parafit and PACo) and event-based methods (Core-PA, Jane). Mitochondrial DNA sequences (COI mtDNA, Cytb, 16S rDNA and 12S rDNA) were used to reconstruct the phylogenies of tropical <i>Amphiprion</i> species and their host anemones by using maximum likelihood with best-fit models selected. Neither distance-based analyses nor event-based analyses revealed global significant congruence between the phylogenies of the hosts and the symbionts, and thus no evidence for coevolution between anemone-anemonefish. However, at the individual pair level, the fish showed some dependence on anemone hosts. Even though living in close association and benefiting from each other, the change of genetic composition of one species (anemonefish) does not always evolve in response to changes in the other (anemones). These findings expand our understanding of the pattern and the role of evolutionary events to allow a better prediction of the future of the anemonefish-anemone relationship.
DOI: 10.6084/m9.figshare.11769924
title: Lambda selection results

description: Processed scores from selecting a random mutational library of lamB in the presence and absence of phage lambda
DOI: 10.6084/m9.figshare.11769927.v1
title: Relationship between empirical water temperature and spring characteristics of swordtip squid (<i>Uroteuthis eduli</i>s) caught in the eastern Tsushima Strait

description: We analysed the data of swordtip squid <i>Uroteuthis edulis</i> caught in the eastern Tsushima Strait, from April to September between 2012 and 2018, to consider the relationships among mantle length and body and gonad weights, associated with the estimated seasonal migratory routes and itineraries improved by the quantitative results of the tracer experiments. Our analyses have enabled us to reveal the characteristics of kensaki-type squid and the reasons for their appearance. We identified the kensaki-type <i>U. edulis</i> as male individuals, caught mainly in April–June, with long slender bodies, probably adapted to empirical duration of the cold sea water temperature in the Sea of Amakusa. Researchers and fishermen have referred to the seasonal migrating group including such males as a spring-migrating group. However, the females belonging to the spring-migrating group had no kensaki-type characteristics. Moreover, contrary to that achieved by the males, the female squid had acquired greater maturation in the spring than in any other seasons. These data demonstrated that the females continued to grow to maturation even in the cold sea waters, implying a different female strategy for reproduction from that of male squid. We are concerned that the commercially valuable kensaki-type squid may decrease in the future because the water temperature in the northern East China Sea is gradually rising, probably due to global climate change.
DOI: 10.6084/m9.figshare.11769921
title: Maltodextrin Selection Results

description: Results of selecting a random mutational library of LamB for ability to grow in M9+maltodextin
DOI: 10.6084/m9.figshare.11769921.v1
title: Maltodextrin Selection Results

description: Results of selecting a random mutational library of LamB for ability to grow in M9+maltodextin
DOI: 10.6084/m9.figshare.11769924.v1
title: Lambda selection results

description: Processed scores from selecting a random mutational library of lamB in the presence and absence of phage lambda
DOI: 10.6084/m9.figshare.11769909
title: Precipitation of Palau

description: Row data of the paper entitled " K factor for soil erosion in Palau should be measured locally"
DOI: 10.6084/m9.figshare.11769894
title: DATA_FOR_PAPER_JGR_2.zip

description: This dataset includes the data for all the figures except for the figure 1 in the article and in the support information. For each of the figures, the data can be found in the corresponding directory. If one figure contains its subfigures, the data files are available for the corresponding subfigures. The quantities and units for each data line can be usually seen in the corresponding figures and captions. Note that each data line gives time (yr.), averaged monthly mass changes (Gt), and uncertainties (Gt) for Figure 4 and Figure 5.
DOI: 10.6084/m9.figshare.11769894.v1
title: DATA_FOR_PAPER_JGR_2.zip

description: This dataset includes the data for all the figures except for the figure 1 in the article and in the support information. For each of the figures, the data can be found in the corresponding directory. If one figure contains its subfigures, the data files are available for the corresponding subfigures. The quantities and units for each data line can be usually seen in the corresponding figures and captions. Note that each data line gives time (yr.), averaged monthly mass changes (Gt), and uncertainties (Gt) for Figure 4 and Figure 5.
DOI: 10.6084/m9.figshare.11769888
title: Achieving extraordinary structural efficiency in a wrought magnesium rare earth alloy

description: The opportunities for wrought magnesium products in a wide range of structural and functional materials for transportation, energy generation, energy storage and propulsion are increasing due to their light-weighting benefits, high specific strength and ease of recyclability. However, the current uses of wrought magnesium alloys for structural applications are limited due to comparatively low strength, high yield strength asymmetry and poor formability & superplasticity. In the present work, we developed an ultrafine-grained magnesium alloy with an extraordinary strength and ductility combination, exceptional high specific strength, zero yield strength asymmetry and excellent high strain rate superplasticity. We have developed friction stir processed UFG microstructure in a rare-earth containing magnesium alloy and achieved exceptional strength-ductility combination along with no yield asymmetry and extraordinary high strain rate superplasticity.
DOI: 10.6084/m9.figshare.11769879
title: Simulated significant wave height (3-hourly, 2015.01-2100.12) from FIO-ESM v2.0 ssp245 experiment r1i1p1f1

description: Simulated significant wave height (3-hourly, 2015.01-2100.12) from FIO-ESM v2.0 ssp245 experiment (one of future scenarios) r1i1p1f1. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.6073/pasta/5b9116a15e1b2b47177ac835b6652596
title: SBC LTER: Long-term experiment: Kelp Removal: Transect depth data

description: These data summarize depth information (mean, standard deviation and coefficient of variation) for all of the transects surveyed as part of the SBC LTER Long Term Kelp Removal Experiment. All data are expressed in meters, referenced to mean lower low water (MLLW). Each value is the result of 160 observations, four at each meter (n=160). The sampling locations in this dataset are 40 meter transects at four reef sites along the mainland coast of the Santa Barbara Channel, California, USA. These data were recorded in 2010.
DOI: 10.6084/m9.figshare.11769798
title: Additional file 2 of Climatic and anthropogenic factors explain the variability of Fagus sylvatica treeline elevation in fifteen mountain groups across the Apennines

description: Additional file 2: Table S1. List of the 224 mountain peaks, distributed across the Apennines, where treeline boundaries were digitized, with mountain group, peak elevation, geographical coordinates, average peak elevation and substrates.
DOI: 10.6084/m9.figshare.11769798.v1
title: Additional file 2 of Climatic and anthropogenic factors explain the variability of Fagus sylvatica treeline elevation in fifteen mountain groups across the Apennines

description: Additional file 2: Table S1. List of the 224 mountain peaks, distributed across the Apennines, where treeline boundaries were digitized, with mountain group, peak elevation, geographical coordinates, average peak elevation and substrates.
DOI: 10.6084/m9.figshare.11769711
title: Additional file 1 of The burden of chronic diseases across Europe: what policies and programs to address diabetes? A SWOT analysis

description: Additional file 1: Figure S1. Policies and programmes on diabetes across Europe: challenges and potentials.
DOI: 10.6084/m9.figshare.11769711.v1
title: Additional file 1 of The burden of chronic diseases across Europe: what policies and programs to address diabetes? A SWOT analysis

description: Additional file 1: Figure S1. Policies and programmes on diabetes across Europe: challenges and potentials.
DOI: 10.6084/m9.figshare.11769696
title: Additional file 9 of Dissecting the control of shoot development in grapevine: genetics and genomics identify potential regulators

description: Additional file 9: Table S5. Presence of the deletion within the genome of fifty-one grapevine cultivars. -, absence of deletion. +, presence of deletion
DOI: 10.6084/m9.figshare.11769696.v1
title: Additional file 9 of Dissecting the control of shoot development in grapevine: genetics and genomics identify potential regulators

description: Additional file 9: Table S5. Presence of the deletion within the genome of fifty-one grapevine cultivars. -, absence of deletion. +, presence of deletion
DOI: 10.6084/m9.figshare.11769681
title: Additional file 7 of Dissecting the control of shoot development in grapevine: genetics and genomics identify potential regulators

description: Additional file 7: Table S4. Alignment of VVCS1H018A11 insert BAC sequence to the chromosome 7 sequence. MUMmer4 software was used to align insert BAC sequence to the chromosome 7 sequence from the 12X.v2 genome
DOI: 10.6084/m9.figshare.11769681.v1
title: Additional file 7 of Dissecting the control of shoot development in grapevine: genetics and genomics identify potential regulators

description: Additional file 7: Table S4. Alignment of VVCS1H018A11 insert BAC sequence to the chromosome 7 sequence. MUMmer4 software was used to align insert BAC sequence to the chromosome 7 sequence from the 12X.v2 genome
DOI: 10.6084/m9.figshare.11769675
title: Additional file 6 of Dissecting the control of shoot development in grapevine: genetics and genomics identify potential regulators

description: Additional file 6: Table S3. Alignment of VVCS1H006A20 insert BAC sequence to the chromosome 7 sequence. MUMmer4 software was used to align insert BAC sequence to the chromosome 7 sequence from the 12X.v2 genome
DOI: 10.6084/m9.figshare.11769675.v1
title: Additional file 6 of Dissecting the control of shoot development in grapevine: genetics and genomics identify potential regulators

description: Additional file 6: Table S3. Alignment of VVCS1H006A20 insert BAC sequence to the chromosome 7 sequence. MUMmer4 software was used to align insert BAC sequence to the chromosome 7 sequence from the 12X.v2 genome
DOI: 10.6084/m9.figshare.11769654
title: Additional file 3 of Dissecting the control of shoot development in grapevine: genetics and genomics identify potential regulators

description: Additional file 3: Table S2. Characteristics of the CS x RGM_F2 linkage map
DOI: 10.6084/m9.figshare.11769654.v1
title: Additional file 3 of Dissecting the control of shoot development in grapevine: genetics and genomics identify potential regulators

description: Additional file 3: Table S2. Characteristics of the CS x RGM_F2 linkage map
DOI: 10.6084/m9.figshare.11769636
title: Additional file 1 of Dissecting the control of shoot development in grapevine: genetics and genomics identify potential regulators

description: Additional file 1: Table S1. New SSR markers developed
DOI: 10.6084/m9.figshare.11769636.v1
title: Additional file 1 of Dissecting the control of shoot development in grapevine: genetics and genomics identify potential regulators

description: Additional file 1: Table S1. New SSR markers developed
DOI: 10.6084/m9.figshare.11769621
title: Additional file 10 of Dissecting the control of shoot development in grapevine: genetics and genomics identify potential regulators

description: Additional file 10: Table S6. Sequence and mean PCR efficiency of primers used for qPCR analysis
DOI: 10.6084/m9.figshare.11769621.v1
title: Additional file 10 of Dissecting the control of shoot development in grapevine: genetics and genomics identify potential regulators

description: Additional file 10: Table S6. Sequence and mean PCR efficiency of primers used for qPCR analysis
DOI: 10.6084/m9.figshare.11769600
title: Additional file 1 of New insights on intercontinental origins of paternal lineages in Northeast Brazil

description: Additional file 1. Genotypic and SNP data. All genotypes found for the samples analysed in this study as well as chosen SNP information can be found in Additional file 1.