cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.hqbzkh1bk
title: Data & Analysis for: Soil microbiome sequencing reveals pathogen accumulation and nutrient cycle changes, but not mycorrhizal suppression in naturally occurring invasion of garlic mustard

description: The disruption of soil microbial communities is thought to be an important
 contributor to range expansion of several invasive plants. Previous
 research has focused on identifying how invasive plants change soil
 microbial diversity and composition. However, it is also important to
 recognize the different functional roles of genetically distinct microbial
 taxa to understand the mechanism of plant invasion and its impact on
 nutrient cycling and other ecosystem services. We examine changes in soil
 microbial functional groups associated with the invasion of Alliaria
 petiolata. Laboratory experiments suggest that A. petiolata can suppress
 arbuscular mycorrhizal fungi (AMF) to disrupt native plant communities.
 Despite mounting evidence of AMF suppression under controlled laboratory
 and greenhouse experiments, it is less clear if allelochemicals persist
 under natural field conditions. To determine how A. petiolata invasion
 alters soil bacterial and fungal diversity and function in the field, we
 assigned taxonomic and functional classification to the 16S and ITS rRNA
 sequences present in edaphically matched soil samples inside and outside
 ten naturally occurring populations of A. petiolata.  We also
 measured root health of plants co-occurring with A. petiolata to test the
 effect of soil microbial functional groups on plant health. In contrast to
 controlled experiments, we found no changes in mycorrhizal diversity,
 suggesting that mycorrhizal suppression is not a particularly strong
 mechanism of A. petiolata invasion. Instead, we recorded changes in
 pathogen community composition and an increase in root lesions for plants
 grown in A. petiolata invaded soils. These results support the ‘Enemy of
 my Enemy Hypothesis’ which predicts pathogen accumulation and spillover,
 decreasing native plant performance. Synthesis We did not find support for
 the suppression of AMF as a mechanism of invasion by A. petiolata in
 invaded field soils. However, changes in the community composition of
 pathogen and nutrient cycling microbes may be important forces underlying
 the invasion of A. petiolata and its impact on ecosystem function.
description: Methods are described in the manuscript. Files include data and
 annotated analysis files to recreate the published results.
DOI: 10.5061/dryad.18931zcs3
title: Data from: Clothing color mediates lizard responses to humans in a tropical forest

description: Identifying how ecotourism affects wildlife can lower its environmental
 impact. Human presence is an inherent component of ecotourism, which can
 impact animal behavior because animals often perceive humans as predators
 and, consequently, spend more time on human-directed antipredator
 behaviors and less on other fitness-relevant activities. We tested whether
 human clothing color affects water anole (Anolis aquaticus) behavior at a
 popular ecotourism destination in Costa Rica, testing the hypothesis that
 animals are more tolerant of humans wearing their sexually selected
 signaling color. We examined if clothing resembling the primary signaling
 color (orange) of water anoles increases number of anole sightings and
 ease of capture. Research teams mimicked an ecotourism group by searching
 for anoles wearing one of three shirt treatments: orange, green, or blue.
 We conducted surveys at three different sites: a primary forest, secondary
 forest, and abandoned pasture. Wearing orange clothing resulted in more
 sightings and greater capture rates compared to blue or green. A higher
 proportion of males were captured when wearing orange whereas sex ratios
 of captured anoles were more equally proportional in the surveys when
 observers wore green or blue . We also found that capture success was
 greater when more people were present during a capture attempt. We
 demonstrate that colors “displayed” by perceived predators (i.e., humans)
 alter antipredator behaviors in water anoles. Clothing choice could have
 unintended impacts on wildlife, and wearing colors resembling the sexually
 selected signaling color might enhance tolerance toward
 humans.
DOI: 10.5061/dryad.s1rn8pk3r
title: Human-induced habitat fragmentation effects on connectivity, diversity and population persistence of an endemic fish, Percilia irwini, in the Biobío river basin (Chile)

description:   An understanding of how genetic variability is distributed in
 space is fundamental for the conservation and maintenance of diversity in
 spatially fragmented and vulnerable populations. While fragmentation can
 occur from natural barriers it can also be exacerbated by anthropogenic
 activities such as hydroelectric power plant development. Whatever the
 source, fragmentation can have significant ecological effects, including
 the disruptions of migratory processes and gene flow among populations. In
 Chile, the Biobío river basin exhibits a high degree of habitat
 fragmentation due to the numerous hydroelectric power plants in operation,
 the number of which is expected to increase following new renewable energy
 use strategies. Here, we assessed the effects of different kinds of
 barriers on the genetic structure of the endemic freshwater fish Percilia
 irwini, knowledge that is critically needed to inform conservation
 strategies in light of current and anticipated further fragmentation
 initiatives in the system. We identified 8 genetic units throughout the
 entire Biobío system with high effective sizes. A reduced effective size
 estimate was however observed in a single population located between two
 impassable barriers. Both natural waterfalls and human made dams were
 important drivers of population differentiation in this system, however,
 dams affect genetic diversity differentially depending on their mode of
 operation. Evidence of population extirpation was found in two river
 stretches limited by upstream and downstream dams. Significant gene flow
 in both directions was found among populations not separated by natural or
 anthropogenic barriers. Our results suggest a significant vulnerability of
 P. irwini populations to future dam development and demonstrate the
 importance of studying basin-wide data sets with genetic metrics to
 understand the strength and direction of anthropogenic impacts on fish
 populations.
DOI: 10.5061/dryad.73n5tb2sr
title: Data from: Growth hormone deficiency and excess alter the gut microbiome in adult male mice

description: The gut microbiome has been implicated in host metabolism, endocrinology,
 and pathophysiology. Furthermore, several studies have shown that gut
 bacteria impact host growth, partially mediated through the growth hormone
 (GH)/insulin-like growth factor-1 (IGF-1) axis. Yet, no study to date has
 examined the specific role of GH on the gut microbiome. Our study thus
 characterized the adult gut microbial profile and intestinal phenotype in
 GH gene-disrupted (GH-/-) mice (a model of GH deficiency) and bovine GH
 transgenic (bGH) mice (a model of chronic, excess GH action) at six months
 of age. Both the GH-/- and bGH mice had altered microbial signatures,
 which were in opposing directions at the phylum and genus levels. For
 example, GH-/- mice had significantly reduced abundance in Proteobacteria,
 Campylobacterota, and Actinobacteria phyla, whereas bGH mice exhibited a
 trending increase in those phyla compared to respective controls. Analysis
 of maturity of the microbial community demonstrated that lack of GH
 resulted in a significantly more immature microbiome while excess GH
 increases microbial maturity. Several common bacterial genera were shared,
 although in opposing directions, between the two mouse lines (e.g.
 decreased in GH-/- mice and increased in bGH mice), suggesting an
 association with GH. Likewise, metabolic pathways like acetate, butyrate,
 heme B and folate biosynthesis were predicted to be impacted by GH. This
 study is the first to characterize the gut microbiome in mouse lines with
 altered GH action and indicates that GH may play a role in the growth of
 certain microbiota thus impacting microbial maturation and metabolic
 function.
description: This data collection details the following supplemental figures
 and tables associated with the manuscript, examining the gut microbiome in
 mouse lines with altered growth hormone action.
 Supplemental Figure 1. Validation of abundance at the genus level
 in the GH-/- and bGH microbiome with quanitative PCR.
 Supplemental Figure 2. Distinct predictive metabolic function in
 GH-/- and bGH microbiome using partial least-squares discriminant analysis
 (PLS-DA) in Metacyc abundance pathways. Supplemental
 Table 1. Bacterial primers used for qPCR to validate 16S rRNA sequencing
 findings. Supplemental Table 2. Correlations between
 intestinal length/fecal weight to microbial diversity and abundance in
 GH-/- and bGH microbiomes. Supplemental Table 3.
 Generalized linear mixed models in GH-/- and bGH mouse lines examining the
 relationship among genotype, intestinal health, and microbial
 findings.
DOI: 10.5061/dryad.1g1jwstr3
title: Search Behavior can Affect Financial Decision Results: A Behavior Study of Google Trends Data and Linguistic Scale

description: As search engines have become the main information resources of our daily
 life, studies about search behavior on the internet have gained great
 popularity with the growing knowledge of how the search behavior itself
 can affect our daily decisions, e.g. what to purchase, where to travel and
 even how to define beauty. However, there is no consensus conclusion
 whether the search behavior itself or the linguistic meaning behind it
 that can affect their decision. After analyzing the linguistic meanings of
 13,915 English words obtained from Google Trends and its profit gained
 from the US house market by automatic transactions. It is found that
 linguistic meanings can affect financial decision results as word clusters
 with supervised machine learning methods.
DOI: 10.5061/dryad.nk98sf7pv
title: Plant functional traits differ in adaptability and are predicted to be differentially affected by climate change

description: 1. Climate change is testing the resilience of forests worldwide pushing
 physiological tolerance to climatic extremes. Plant functional traits have
 been shown to be adapted to climate, and have evolved patterns of trait
 correlations (similar patterns of distribution) and coordinations
 (mechanistic trade-off). We predicted that traits would differentiate
 between populations associated with climatic gradients, suggestive of
 adaptive variation, and correlated traits would adapt to future climate
 scenarios in similar ways. 2. We measured genetically determined trait
 variation and described patterns of correlation for seven traits:
 photochemical reflectance index (PRI), normalized difference vegetation
 index (NDVI), leaf size (LS), specific leaf area (SLA), δ13C (integrated
 water use efficiency, WUE), nitrogen concentration (NCONC), and wood
 density (WD). All measures were conducted in an experimental plantation on
 960 trees sourced from 12 populations of a key forest canopy species in
 southwestern Australia. 3. Significant differences were found between
 populations for all traits. Narrow-sense heritability was significant for
 five traits (0.15 to 0.21), indicating that natural selection can drive
 differentiation; however, SLA (0.08) and PRI (0.11) were not significantly
 heritable. Generalised additive models predicted trait values across the
 landscape for current and future climatic conditions (&gt;90%
 variance). The percent change differed markedly among traits between
 current and future predictions (differing as little as 1.5% (δ13C) or as
 much as 30% (PRI)). Some trait correlations were predicted to break down
 in the future (SLA:NCONC, δ13C:PRI, and NCONC:WD). 4. Synthesis: Our
 results suggest that traits have contrasting genotypic patterns and will
 be subjected to different climate selection pressures, which may lower the
 working optimum for functional traits. Further, traits are independently
 associated with different climate factors, indicating that some trait
 correlations may be disrupted in the future. Genetic constraints and trait
 correlations may limit the ability for functional traits to adapt to
 climate change.
DOI: 10.5061/dryad.1jwstqjqq
title: Wide sensitive area of small foreshocks

description: Scientists demystify stress changes within tens of days before a mainshock
 and often utilize its foreshock as an indicator.  Typically,
 foreshocks are detected near fault zones, which may be due to the
 distribution of seismometers.  This study investigates changes in
 seismicity far from mainshocks by examining tens of thousands of M
 &gt;= 2 quakes that were monitored by dense seismic arrays for more
 than 10 years in Taiwan and Japan.  The quakes occurred within
 epicentral distances ranging from 0 km to 400 km during a period of 60
 days before and after the mainshocks that are utilized to exhibit common
 behaviors of seismicity in the spatiotemporal domain.  The
 superimposition results show that wide areas exhibit increased seismicity
 associated with mainshocks being more than 50 times to areas of the fault
 rupture.  The seismicity increase initially concentrates in the
 fault zones, and gradually expands outward to over 50 km away from the
 epicenters approximately 40 days before the mainshocks.  The
 seismicity increases more rapidly around the fault zones approximately 20
 days before the mainshocks.  The stressed crust triggers
 resonance at frequencies varying from ~3×10-4 Hz to ~10-3 Hz (i.e.,
 variable frequency) along with earthquake-related stress that migrates
 from exterior areas to approach the fault zones.  The variable
 frequency is determined by the observation of continuous seismic waveforms
 through the superimposition processes and is further supported by the
 resonant frequency model.  These results suggest that the
 variable frequency of ground vibrations is a function of areas with
 increased seismicity leading to earthquakes.
DOI: 10.5061/dryad.3n5tb2rck
title: Data from: Multiple innate antibacterial immune defense elements are correlated in diverse ungulate species

description: In this study, we aimed to evaluate to what extent different assays of
 innate immunity reveal similar patterns of variation across ungulate
 species. We compared several measures of innate antibacterial immune
 function across seven different ungulate species using blood samples
 obtained from captive animals maintained in a zoological park. 
 We measured mRNA expression of two receptors involved in innate pathogen
 detection, toll-like receptors 2 and 5 (TLR2 and 5), the bactericidal
 capacity of plasma, as well as the number of neutrophils and
 lymphocytes.  Species examined included aoudad (Ammotragus
 lervia), American bison (Bison bison bison), yak (Bos grunniens),
 Roosevelt elk (Cervus canadensis roosevelti), fallow deer (Dama dama),
 sika deer (Cervus nippon), and Damara zebra (Equus quagga burchellii).
 Innate immunity varied among ungulate species. However, we detected
 strong, positive correlations between the different measures of innate
 immunity – specifically, TLR2 and TLR5 were correlated, and the neutrophil
 to lymphocyte ratio was positively associated with TLR2, TLR5, and
 bacterial killing ability. Our results suggest that ecoimmunological study
 results may be quite robust to the choice of assays, at least for
 antibacterial innate immunity; and that, despite the complexity of the
 immune system, important sources of variation in immunity in natural
 populations may be discoverable with comparatively simple tools.
DOI: 10.5061/dryad.hdr7sqvd1
title: Flower–visitor specimens preserved in the Kyoto University Museum

description: This is a modified dataset of flower-visitors published by three
 papers (Inoue et al. 1990, Kakutani et al. 1990, Kato et al. 1990).
 Authors and their students of Kyoto University collected
 flower-visiting insects as part of a practical seminar at three
 research sites in Kyoto, Japan in the 1980s. They also
 recorded the name of the plant species where visitor
 insects were collected. Specimens of collected insects have been
 preserved in the Kyoto University museum. We checked the preserved status
 of each specimen and modified the data list. References: Inoue T,
 Kato M, Kakutani T, Suka T, Itino T. 1990. Insect-flower relationship in
 the temperate deciduous forest of Kibune, Kyoto: an overview of the
 flowering phenology and the seasonal pattern of insect visits. Contr.
 Biol. Lab. Kyoto Univ. 27, 377–463. Kakutani T, Inoue T, Kato M, Ichihashi
 H. 1990. Insect-flower relationship in the campus of Kyoto University,
 Kyoto: an overview of the flowering phenology and the seasonal pattern of
 insect visits. Contr. Biol. Lab. Kyoto Univ. 27, 465–521. Kato M, Kakutani
 T, Inoue T, Itino T. 1990. Insect-flower relationship in the primary beech
 forest of Ashu, Kyoto: an overview of the flowering phenology and the
 seasonal pattern of insect visits. Contr. Biol. Lab. Kyoto Univ. 27,
 309–375.
description: Researchers and their students
 collected flower-visiting insects as part of a practical seminar at three
 study sites in Kyoto, Japan in the 1980s: Ashu (35°20’34”N, 135°45’32”E),
 1984 to 1987 (Kato et al., 1990), Kibune (35°08’04’’N, 135°45’51”E), 1984
 to 1987 (Inoue et al., 1990), and the Yoshida campus of Kyoto university
 (35°01’50’’N, 135°47’13”E), 1985 to 1987 (Kakutani et al., 1990). Insect
 collections were conducted on sunny days, 8–19 times at Ashu, 5–10 times
 at Kibune, and 32–49 times at the campus of Kyoto University from April to
 Novermber, by using insect nets for 10 minutes at a location in front of
 flowering plants along census routes (Kato et al. 1990). When collecting
 insects, they also recorded the name of the plant species visited by
 collected insects. Specimens of collected insects have been preserved in
 the Kyoto University museum. Detailed information may be found in those
 papers (Inoue et al., 1990; Kakutani et al., 1990; Kato et al.,
 1990). We checked the preserved status of
 each insect specimen and modified the dataset. If specimens were missed,
 ill-conditioned, and sex-unknown, we removed the data from the dataset and
 revised classification of misidentified specimens. We then generated a
 modified dataset that contains reference number, collection date,
 collection year, collection site, insect order, family, genus, species (or
 sp.), its sex and plant species.
DOI: 10.5061/dryad.qnk98sfbt
title: Vegetation structure and ground cover attributes describe the occurrence of a newly discovered carnivorous marsupial on the Tweed Shield Volcano caldera, the endangered black-tailed dusky antechinus (Antechinus arktos).

description: The black-tailed dusky antechinus (Antechinus arktos) is a recently
 discovered, endangered, carnivorous marsupial mammal endemic to the Tweed
 Shield Volcano caldera, straddling the border between Queensland and New
 South Wales in eastern Australia. The species’ preference for cool, high
 altitude habitats makes it particularly vulnerable to a shifting climate
 as these habitats recede. Aside from basic breeding ecology and dietary
 patterns the species’ biology is largely unknown. Understanding fine scale
 habitat attributes preferred by this endangered mammal is critical to
 employ successful conservation management. Here, we assess vegetation
 attributes of known habitats over three sites at Springbrook and Border
 Ranges National Parks, including detailed structure data and broad
 floristic assessment. Floristic compositional assessment of the
 high-altitude, cloud rainforest indicated broad similarities. However,
 only 22% of species were shared between all sites indicating a high level
 of local endemism. This suggests a diverse assemblage of vegetation across
 A. arktos habitats. Habitat characteristics were related to capture
 records of A. arktos to determine potential fine-scale structural habitat
 requirements. Percentage of rock cover and leaf litter were the strongest
 predictors of A. arktos captures across survey sites suggesting a need for
 foraging substrate and cover. Habitat characteristics described here will
 inform predictive species distribution models of this federally endangered
 species and are applicable to other mammal conservation programs.
DOI: 10.5061/dryad.t1g1jwsz4
title: Ordered phylogenomic subsampling enables diagnosis of systematic errors in the placement of the enigmatic arachnid order Palpigradi

description: The miniaturized arachnid order Palpigradi has ambiguous phylogenetic
 affinities, due to its odd combination of plesiomorphic and derived
 morphological traits. This lineage has never been sampled in phylogenomic
 datasets because of its small body size and fragility of most species, a
 sampling gap of immediate concern to recent disputes over arachnid
 monophyly. To redress this gap, we sampled a population of the
 cave-inhabiting species Eukoenenia spelaea from Slovakia
 and inferred its placement in the phylogeny of Chelicerata using dense
 phylogenomic matrices of up to 1450 loci, drawn from high-quality
 transcriptomic libraries and complete genomes. The complete matrix
 included exemplars of all extant orders of Chelicerata. Analyses of the
 complete matrix recovered palpigrades as the sister group of the
 long-branch order Parasitiformes (ticks) with high support. However,
 sequential deletion of long-branch taxa revealed that the position of
 palpigrades is prone to topological instability. Phylogenomic subsampling
 approaches that maximized taxon or dataset completeness recovered
 palpigrades as the sister group of camel spiders (Solifugae), with modest
 support. While this relationship is congruent with the location and
 architecture of the coxal glands, a long-forgotten character system that
 opens in the pedipalpal segments only in palpigrades and solifuges, we
 show that nodal support values in concatenated supermatrices can mask high
 levels of underlying topological conflict in the placement of the
 enigmatic Palpigradi.
DOI: 10.82294/dvnhkwgwo
title: Entrevistas semiestructuradas. Territorio: Cartagena. Sector: Educación. Año: 2025

description: A partir de un proceso de acompañamiento situado, se recopilaron testimonios por medio de entrevistas semiestructuradas durante el año 2025, las cuales indagaron sobre 4 categorías que describían la práctica en educación artística de docentes, cultores, sabedores de la enseñanza del arte, que hacían parte de los programas de formación en educación artística y cultural del sector Educación (educación formal) en la ciudad de Cartagena.