cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.qxsza8
title: Occurrence Download

description: A dataset containing 1212 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alnus rubra Bong."
 ]
}

 The dataset includes 1212 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055833-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kb9dq8
title: Occurrence Download

description: A dataset containing 476 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carpinus londoniana H.J.P.Winkl."
 ]
}

 The dataset includes 476 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0195834-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8jsnhz
title: Occurrence Download

description: A dataset containing 286 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brunsvigia gregaria R.A.Dyer"
 ]
}

 The dataset includes 286 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063606-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ijdaa4
title: Occurrence Download

description: A dataset containing 85 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myocastor coypus (Molina, 1782)",
 "Country is Italy"
 ]
}

 The dataset includes 85 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055834-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/examiner-c44-112939
title: General Smith at Camp Pendleton, 1952

description: 3 images. General Smith at Camp Pendleton, 18 December 1952. Paul Douglas; Jan Sterling (Mrs. Paul Douglas); Major General Oliver P. Smith (Commanding General, Camp Pendleton, Marine Barracks); Rory Calhoun; Lita Baron (Mrs. Rory Calhoun); Brigadier General Frank Dorn (Deputy Chief, Army Department of Information from Washington, D.C.). (Handout). ; Supplementary material reads: "No. 17, L to R: Rory Calhoun; Lita Baron (Mrs. Calhoun); and Brig. Gen. Frank Dorn, Deputy Chief, Army Dept. of Information, from Wash., D.C. No. 31, L to R: Paul Douglas; Jan Sterling (Mrs. Douglas); Maj. Gen. Oliver P. Smith, Commanding General, Camp Pendleton, Marine Barracks. No. 32, L to R: Paul Douglas; Jan Sterling (Mrs. Douglas); Maj. Gen. Oliver P. Smith, Commanding General, Camp Pendleton, Marine Barracks."
DOI: 10.48324/dandi.000689/0.240524.2012
title: Data supporting Neurotensin orchestrates valence  assignment in the amygdala

description: This dandiset contains the data used in the paper, Li, H., Namburi, P., Olson, J.M. et al. Neurotensin orchestrates valence assignment in the amygdala. Nature 608, 586–592 (2022). https://doi.org/10.1038/s41586-022-04964-y.  It includes in vivo electrophysiology recordings of experiments for valence assignment in the amygdala, corresponding behavioral videos during Pavlovian discrimination tasks, and histology.  A second cohort includes fiber photometry data.
DOI: 10.25549/examiner-c44-112907
title: Church meeting, 1952

description: 2 images. Church meeting, 16 December 1952. Judge Roger A. Pfaff; Right Reverend Donald J. Campbell; Reverend Walter W. Williams; William H. Sigmund.
DOI: 10.15468/dl.hnshrd
title: Occurrence Download

description: A dataset containing 72169743 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "OccurrenceStatus is Present",
 "Year 2010-2023"
 ]
}

 The dataset includes 72169743 records from 7188 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0195830-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gempkd
title: Occurrence Download

description: A dataset containing 1045 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to 64.085278",
 "DecimalLatitude is less than or equal to 69.085278",
 "DecimalLongitude is greater than or equal to 110.0",
 "DecimalLongitude is less than or equal to 115.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 1045 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038064-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/akxj1l
title: PAN-00161471 - smooth ware jug type St. 110

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00161471&lt;/p&gt;
description: Modified: 2025-11-06T12:07:37+01:00
DOI: 10.5281/zenodo.17154734
title: Unveiling Dopamine and Met-Enkephalin Dynamics: Simultaneous Co-Detection in Rat Striatum

description: Endogenous opioid peptides have been linked to numerous physiological functions, including pain perception and the motivational drive associated with substance use disorders, but many fundamental aspects of transmission remain ambiguous. The kinetics of endogenous opioid peptides are thought to be slower and to last longer than those of more classical small-molecule neurotransmitters, like dopamine; however, a direct comparison of the release and diffusive spread of these molecules in the brain is lacking. Here, fast-scan cyclic voltammetry was coupled with carbon microelectrodes for co-detection of dopamine and met-enkephalin (M-ENK) at single recording sites in rat striatal slices. The measurements used a voltammetric waveform that was specifically designed to minimize sensitivity to dopamine, maximize sensitivity to enkephalin, and to minimize biofouling. Both neurotransmitter (dopamine) and neuropeptide (M-ENK) release scaled with stimulation duration. Interestingly, ENK dynamics in striatum displayed a unique biphasic profile with a significant latency to peak that occurred ~30 seconds after stimulation, suggesting a sphere of influence that was ~3x larger than that of dopamine. Mathematical modeling of the evoked M-ENK concentration profile suggests that multiple forms of ENK were released at once, such that some of the five-amino-acid form of M-ENK was released in exocytosis, and some was generated in the extracellular space by enzymatic cleavage of a larger form of ENK. Finally, a series of experiments combined solid-phase extraction with liquid-chromatography mass spectrometry to independently verify ENK release. The findings provide direct evidence to support widely held assumptions regarding neuropeptide release, and they demonstrate how different classes of signaling molecules can potentially affect distinct cellular populations in striatum - even when released at the same site.
DOI: 10.5281/zenodo.17154733
title: Unveiling Dopamine and Met-Enkephalin Dynamics: Simultaneous Co-Detection in Rat Striatum

description: Endogenous opioid peptides have been linked to numerous physiological functions, including pain perception and the motivational drive associated with substance use disorders, but many fundamental aspects of transmission remain ambiguous. The kinetics of endogenous opioid peptides are thought to be slower and to last longer than those of more classical small-molecule neurotransmitters, like dopamine; however, a direct comparison of the release and diffusive spread of these molecules in the brain is lacking. Here, fast-scan cyclic voltammetry was coupled with carbon microelectrodes for co-detection of dopamine and met-enkephalin (M-ENK) at single recording sites in rat striatal slices. The measurements used a voltammetric waveform that was specifically designed to minimize sensitivity to dopamine, maximize sensitivity to enkephalin, and to minimize biofouling. Both neurotransmitter (dopamine) and neuropeptide (M-ENK) release scaled with stimulation duration. Interestingly, ENK dynamics in striatum displayed a unique biphasic profile with a significant latency to peak that occurred ~30 seconds after stimulation, suggesting a sphere of influence that was ~3x larger than that of dopamine. Mathematical modeling of the evoked M-ENK concentration profile suggests that multiple forms of ENK were released at once, such that some of the five-amino-acid form of M-ENK was released in exocytosis, and some was generated in the extracellular space by enzymatic cleavage of a larger form of ENK. Finally, a series of experiments combined solid-phase extraction with liquid-chromatography mass spectrometry to independently verify ENK release. The findings provide direct evidence to support widely held assumptions regarding neuropeptide release, and they demonstrate how different classes of signaling molecules can potentially affect distinct cellular populations in striatum - even when released at the same site.
DOI: 10.5281/zenodo.14553599
title: PARAGON 2 - KM2209 - trace metals data

description: This dataset contains measurements of trace metal data collected from the PARAGON 2 cruise. Dissolved Fe, Suspended particulate Fe, Al, and Sinking particulate Fe and Al data are reported in this dataset. This data will be published in the article "Surface water iron deposition histories and the initiation of phytoplankton blooms in the North Pacific Subtropical Gyre" in Global Biogeochemical Cycles.
DOI: 10.5281/zenodo.17857911
title: PARAGON 2 - KM2209 - trace metals data

description: This dataset contains measurements of trace metal data collected from the PARAGON 2 cruise. Dissolved Fe, Suspended particulate Fe, Al, and Sinking particulate Fe and Al data are reported in this dataset. This data will be published in the article "Surface water iron deposition histories and the initiation of phytoplankton blooms in the North Pacific Subtropical Gyre" in Global Biogeochemical Cycles.
DOI: 10.5281/zenodo.17393388
title: The Influence of Ligands on AlphaFold3 Prediction of Cryptic Pockets
DOI: 10.5281/zenodo.17393389
title: The Influence of Ligands on AlphaFold3 Prediction of Cryptic Pockets
DOI: 10.15468/dl.h7t44g
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((109.3 0.086185, 109.229737 0.080618, 109.161204 0.064054, 109.096088 0.036901, 109.035994 -0.000172, 108.982399 -0.046253, 108.936625 -0.100207, 108.899797 -0.160705, 108.872823 -0.226258, 108.856366 -0.295252, 108.850833 -0.365989, 108.85636 -0.436725, 108.87281 -0.505721, 108.899779 -0.571277, 108.936603 -0.631778, 108.982377 -0.685735, 109.035972 -0.73182, 109.09607 -0.768896, 109.161191 -0.796051, 109.22973 -0.812617, 109.3 -0.818184, 109.37027 -0.812617, 109.438809 -0.796051, 109.50393 -0.768896, 109.564028 -0.73182, 109.617623 -0.685735, 109.663397 -0.631778, 109.700221 -0.571277, 109.72719 -0.505721, 109.74364 -0.436725, 109.749167 -0.365989, 109.743634 -0.295252, 109.727177 -0.226258, 109.700203 -0.160705, 109.663375 -0.100207, 109.617601 -0.046253, 109.564006 -0.000172, 109.503912 0.036901, 109.438796 0.064054, 109.370263 0.080618, 109.3 0.086185))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038065-251120083545085/datasets/export for details.
DOI: 10.18112/openneuro.ds005250.v1.1.6
title: Single-echo/multi-echo comparison pilot
DOI: 10.7266/3t17a0wx
title: Data validating radiocarbon aging in sea turtle hatchling eye lens samples obtained from Nassau to Volusia Counties in north Florida, 1992 and 2019-2021
DOI: 10.15468/dl.sjyken
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trachypithecus laotum",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 12 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038067-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ch5re
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gaultheria linifolia, Gaultheria nubigena, Gaultheria renjifoana)",
 "BasisOfRecord is Specimen",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038068-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18112/openneuro.ds006169.v1.0.4
title: Longitudinal-Trajectories-Early-Brain-Development-Language
DOI: 10.5281/zenodo.17525635
title: Long-term trends in aquatic communities of mesotrophic lakes along a land-use gradient in eastern Canada

description: Increased human development since the Industrial Era has intensified toxic cyanobacterial blooms, which pose significant risks to public health and can cause detrimental effects on lake ecosystems. Mesotrophic lakes are particularly sensitive to nutrient shifts, making them critical systems for understanding bloom dynamics. Sedimentary DNA from paleolimnological archives provides valuable insights into community structure by situating contemporary data within the context of historical dynamics. We analyzed sediment cores from six mesotrophic lakes in Québec and Ontario (Canada) that span a modern human land-use gradient. Cores were analyzed using sedimentary DNA techniques targeting specific cyanobacteria marker genes, including quantitative (q)PCR and 16S rRNA gene sequencing. Cladoceran assemblages from the same cores provided complementary food web data. We detected widespread increases in cyanobacteria abundance across all lakes, with a higher magnitude of increase in lakes located in high intensity land-use catchments. Bloom-forming orders (Nostocales, Chroococcales, Oscillatoriales) increased in relative abundance in some lakes, often replacing unicellular Synechococcales, which tended to dominate less-impacted systems. These cyanobacterial shifts often coincided with compositional changes in cladoceran assemblages, favoring small-bodied and ecologically flexible taxa such as Bosmina and Chydorus brevilabris. Overall, the analyses of paleogenetic records demonstrate that climate change, land-use intensity, and lake-specific traits have driven century-scale cyanobacterial increases and food-web shifts in mesotrophic lakes, with impacts on both bloom dynamics and cladoceran communities. Such long-term analyses are essential for revealing how interacting human and climatic pressures reshape aquatic ecosystems and guiding more effective management.
DOI: 10.5281/zenodo.17525636
title: Long-term trends in aquatic communities of mesotrophic lakes along a land-use gradient in eastern Canada

description: Increased human development since the Industrial Era has intensified toxic cyanobacterial blooms, which pose significant risks to public health and can cause detrimental effects on lake ecosystems. Mesotrophic lakes are particularly sensitive to nutrient shifts, making them critical systems for understanding bloom dynamics. Sedimentary DNA from paleolimnological archives provides valuable insights into community structure by situating contemporary data within the context of historical dynamics. We analyzed sediment cores from six mesotrophic lakes in Québec and Ontario (Canada) that span a modern human land-use gradient. Cores were analyzed using sedimentary DNA techniques targeting specific cyanobacteria marker genes, including quantitative (q)PCR and 16S rRNA gene sequencing. Cladoceran assemblages from the same cores provided complementary food web data. We detected widespread increases in cyanobacteria abundance across all lakes, with a higher magnitude of increase in lakes located in high intensity land-use catchments. Bloom-forming orders (Nostocales, Chroococcales, Oscillatoriales) increased in relative abundance in some lakes, often replacing unicellular Synechococcales, which tended to dominate less-impacted systems. These cyanobacterial shifts often coincided with compositional changes in cladoceran assemblages, favoring small-bodied and ecologically flexible taxa such as Bosmina and Chydorus brevilabris. Overall, the analyses of paleogenetic records demonstrate that climate change, land-use intensity, and lake-specific traits have driven century-scale cyanobacterial increases and food-web shifts in mesotrophic lakes, with impacts on both bloom dynamics and cladoceran communities. Such long-term analyses are essential for revealing how interacting human and climatic pressures reshape aquatic ecosystems and guiding more effective management.
DOI: 10.6084/m9.figshare.30822977
title: Supplemental Tables S1 and S2 for Combining structural modeling and deep learning to calculate the E. coli protein interactome and functional networks

description: We report on the integration of three methods that are computationally efficient enough to predict, on a proteome-wide scale, whether two proteins are likely to form a binary complex. The methods include PrePPI, which uses three-dimensional structure information as a basis for predictions, Topsy-Turvy, which analyzes sequences using a protein language model, and ZEPPI, which uses evolutionary information to evaluate protein-protein interfaces. We demonstrate how these methods can be integrated and validate the performance of the integrated method and its separate components at predicting <i>E. coli</i> protein-protein interactions (PPIs) through testing on the HINT high-quality literature-curated database of binary PPIs. The integrated method has better performance and identifies more high-confidence interactions than any of the component methods. The AF3Complex algorithm was used to predict the structures of 374 PPIs with a large fraction having at least partially overlapping interfaces with PrePPI models of the same complex. Finally, we clustered the high-confidence <i>E. coli</i> interactome and obtained 385 subnetworks which have high functional coherence defined by enrichment of Gene Ontology Biological Process terms, thus, illustrating that our methods, which contain no explicit functional information, provide biologically meaningful PPIs. Biological insights derived from the subnetworks, including the annotation of proteins of unknown function, are discussed in detail. The functional insights obtained from structure-based PPI predictions highlight the applicability of the comprehensive <i>E. coli</i> interactome presented here.
DOI: 10.6084/m9.figshare.30822977.v1
title: Supplemental Tables S1 and S2 for Combining structural modeling and deep learning to calculate the E. coli protein interactome and functional networks

description: We report on the integration of three methods that are computationally efficient enough to predict, on a proteome-wide scale, whether two proteins are likely to form a binary complex. The methods include PrePPI, which uses three-dimensional structure information as a basis for predictions, Topsy-Turvy, which analyzes sequences using a protein language model, and ZEPPI, which uses evolutionary information to evaluate protein-protein interfaces. We demonstrate how these methods can be integrated and validate the performance of the integrated method and its separate components at predicting <i>E. coli</i> protein-protein interactions (PPIs) through testing on the HINT high-quality literature-curated database of binary PPIs. The integrated method has better performance and identifies more high-confidence interactions than any of the component methods. The AF3Complex algorithm was used to predict the structures of 374 PPIs with a large fraction having at least partially overlapping interfaces with PrePPI models of the same complex. Finally, we clustered the high-confidence <i>E. coli</i> interactome and obtained 385 subnetworks which have high functional coherence defined by enrichment of Gene Ontology Biological Process terms, thus, illustrating that our methods, which contain no explicit functional information, provide biologically meaningful PPIs. Biological insights derived from the subnetworks, including the annotation of proteins of unknown function, are discussed in detail. The functional insights obtained from structure-based PPI predictions highlight the applicability of the comprehensive <i>E. coli</i> interactome presented here.
DOI: 10.15468/dl.khzzn8
title: Occurrence Download

description: A dataset containing 154 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Catch data from New Zealand research trawls since 2008",
 "Geometry POLYGON((174.15435 -42.98231,174.15435 -43.88071,174.765 -43.88071,174.765 -42.98231,174.15435 -42.98231))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cephalopoda"
 ]
}

 The dataset includes 154 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038069-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v6yn4s
title: Occurrence Download

description: A dataset containing 8282 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is one of (Mexico, United States of America, Honduras, Guatemala, El Salvador, Belize, Costa Rica, Nicaragua, Panama)",
 "OccurrenceStatus is Present",
 "TaxonKey is Prosthechea",
 "Year 1980-2025"
 ]
}

 The dataset includes 8282 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038066-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5qzeup
title: Occurrence Download

description: A dataset containing 10392 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (iNaturalist Research-grade Observations)",
 "Geometry POLYGON(( -123.517678884873 39.4373040777211 , -122.543147590988 39.4373040777211 , -122.543147590988 40.4429899961914 , -123.517678884873 40.4429899961914 , -123.517678884873 39.4373040777211 ))",
 "Year is greater than or equal to 2016"
 ]
}

 The dataset includes 10392 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038070-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57783/8pvf-ny67
title: LibreChat