cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12286838.v1
title: Supplementary Material for: Does YouTube Provide Reliable and High-Quality Information? Assessment of Pap Smear Test Videos

description: <b><i>Aim:</i></b> YouTube is one of the most popular video-sharing platforms and is used by many people as a source of information regarding health conditions. Although there are many studies examining YouTube health-related videos in terms of quality, content and accuracy, there is not any study observing the content of YouTube videos about the “Pap smear test.” Therefore, we intended to evaluate YouTube videos related to the Pap smear test. <b><i>Methods:</i></b> We made a search by typing “Pap smear test” and observed the first 100 videos. According to our selection criteria, only 42 videos were reviewed. We used 3 different questionnaires to rate the videos. The videos were independently rated by 2 gynecologists in terms of technical aspects, follow-up protocol, and video quality. <b><i>Results:</i></b> Our study showed that clarity of the technical aspects of Pap smear testing (Q1) was 40% and that of the follow-up protocol (Q2) was only 11%. In terms of video quality (Q3), the adequacy rate was 34%. There was a statistically significant negative correlation between search rank and the video power index (which increased as the ranking decreased to rank 1, <i>r</i>: −0.481). <b><i>Conclusion:</i></b> We did not find quality and reliable information on YouTube videos about the Pap smear test, which is important for early detection of cervical cancers. While preparing health-related videos for YouTube and similar websites, the support of professional healthcare workers will help provide more accurate content.
DOI: 10.6084/m9.figshare.17087765.v1
title: spatialRNAseq_ileum_raw_suppdata.zip

description: High resolution H&E images (TIF) and manual spot alignment (JOSN) files for 10x Genomics Visium spatial transcriptomics experiments for reovirus-infected mice ileum tissues. These files are raw files which can be used with raw sequencing data to generate count matrices for spatial transcriptomics analysis. If you want processed files ready for analysis, please download the processed_suppdata (ZIP) instead.
DOI: 10.6084/m9.figshare.25348321.v3
title: <b>Identification of biomarkers and therapy targets for diabetic kidney disease by integrating proteome with genome</b>

description: Supplementary Data
DOI: 10.17632/j6hn2ptym2
title: AIoT-Driven Business Intelligence and Supply Chain Optimization: Real-Time Insights for Strategic Decision-Making and Sustainable Operations

description: This research introduces a comprehensive framework for integrating Artificial Intelligence of Things (AIoT) into modern supply chain management. We examine five AIoT-enabled applications: dynamic fleet routing, supplier risk monitoring, autonomous inventory replenishment, Just-in-Time (JIT) delivery optimization, and warehouse robotics coordination. Synthetic datasets and machine learning models—ranging from regression to classification and reinforcement learning—simulate predictive scenarios for each domain. Our findings underscore measurable improvements in delivery efficiency, risk mitigation, and sustainability. This study demonstrates how AIoT facilitates real-time decision-making, enhances resilience, and fosters eco-conscious operations in complex supply chain ecosystems.
DOI: 10.6084/m9.figshare.11616831.v1
title: A Systems Survey of Progressive Host-Cell Reorganization during Rotavirus Infection

description: Single cell data extracted from a genome-wide siRNA screen of HCT116 colon cancer cells. Extracted features quantify nuclear and rotavirus infection phenotypes based on DAPI and Viral Protein 6 markers. These include nuclear and cell shape, texture values, intensity values and infection values.<br>Example script for retrieving measurements from this dataset in MatLab<br>% To get the list of available data namesstrFilePath = 'HDF_SingleCell.hdf';<br>hinfo= hdf5info(strFilePath)hinfo.GroupHierarchy.Groups.Name<br>% A dataset is available for each well. Plate number character 3-4,% plate replicate character 7, followed by the row and column numberwellName = 'T810r2iR11C16';<br>% Read specific dataseth5read(strFilePath,strcat('/', wellName, '/matCompleteData'))<br>% Get feature names: 168 features are available for each single cellallfeatures = h5read(stFilePath,'/ProbModelData/strFinalFieldName');<br>
DOI: 10.6084/m9.figshare.12793595.v1
title: Chromosome-level genome assembly of Poropuntius huangchuchieni

description: The genome annotation (genomic features, GFF) of <i>Poropuntius huangchuchieni</i>, <i>Poropuntius</i> genus, Barbinae subfamily, Cyprinid family.<br>
DOI: 10.6084/m9.figshare.21437292.v1
title: Froth Images generated by Magotteaux Cell

description: The database consist in a set of froth images, obtained using a special laboratory cell, designed to emulate the conditions seen in an industrial flotation cell. The database contains 2250 images, distributed in 45 categories. Each category was created with a specific combination of testing conditions. <br> The database also includes a spreadsheet file named ImagesCatalog.xlsx, which contains the flotation operational conditions under which each category was obtained, and information about the visual properties, which is seen in the images corresponding to each category, including the perceived quality of the froth.
DOI: 10.6084/m9.figshare.24787458.v1
title: <b>Single cell lineage tracing reveals clonal dynamics of anti-EGFR therapy resistance in triple negative breast cancer.</b>

description: Seurat object of scRNA-seq data and associated metadata
DOI: 10.17632/d2vnj5vc5y
title: Demostracion de tesis y articulo cienifico que se asemeja a mi tema de proyecto

description: Un ejemplo de tesis y articulo cientifico
DOI: 10.6084/m9.figshare.28689917.v1
title: Innovative work behaviour

description: This study addresses a significant gap in the literature by investigating the intricate mechanisms linking High Performance Work Systems (HPWS) and innovative work behaviour (IWB) in Nigerian higher education institutions. Our research presents a moderated mediation model, highlighting the pivotal roles of employee creativity and knowledge sharing in fostering innovation within academic environments. Using a quantitative approach and SmartPLS 4 analysis, our findings provide new insights into HRM strategies that can enhance creativity and innovation among university staff.
DOI: 10.17632/nc2v8bdjnv
title: Buried but preserved: the Proterozoic Arubiddy Ophiolite, Madura Province, Western Australia

description: U-Pb geochronology and whole-rock geochemical and Nd isotope data are used to determine ophiolite type and age, and to interpret its relationships to the Archean–Proterozoic continental margin that it overlies. We describe a previously unidentified Proterozoic ophiolite complex situated in the Madura Province in southeastern Western Australia. The Madura Province is almost entirely covered by Mesozoic to Cenozoic basin rocks but new basement drillcores have revealed oceanic crustal assemblages that record continental marginal basin formation followed by oceanic subduction and basin closure. The Pinto Basalt has E-MORB/OIB chemical affinity and ɛNd (1600 Ma) from 2.54 to + 3.3. It formed by mantle upwelling beneath extending crust in an ocean-continent transition zone and must be considerably older than c. 1389 Ma adakite that intrudes it. The Sleeper Camp Formation comprises mafic metavolcaniclastic schist intruded by metadolerite and plagiogranite veins. Zircon crystals from the metavolcaniclastic schist yield a dominant age component and maximum depositional age of 1536 ± 13 Ma. The metadolerite and plagiogranite veins have zircon crystallization ages of 1479 ± 8 Ma and 1471 ± 5 Ma, respectively. Interlayered basalt and sediments of the Malcolm Metamorphics have a maximum depositional age of c. 1470 Ma and were metamorphosed at 1315 ± 11 Ma. The mafic rocks from both units are tholeiitic, with MORB-like HFSE ratios that point to a depleted mantle source similar to N-MORB, but with trace element patterns that indicate subduction enrichment. V/Ti ratio trends suggest the Sleeper Camp Formation marks oceanic subduction initiation at c. 1479 Ma. The progression to oceanic arc formation is recorded by the Malcolm Metamorphics after c. 1470 Ma, and the Haig Cave Supersuite from 1415 to 1389 Ma. The majority of these rocks occur within the hanging wall of the Rodona Shear Zone and were structurally emplaced above the continental margin of the West Australian Craton between 1389 and 1330 Ma during oceanic arc–continent collision, forming the Arubiddy Ophiolite Complex. The occurrence of oceanic crustal assemblages behind the accreted ophiolite complex frozen by the emplacement of voluminous 1192–1125 Ma Moodini Supersuite ferrogabbros and granites demonstrates that continental collision did not occur between the West Australian and South Australian Cratons. The preservation of rocks of oceanic affinity behind ophiolites could be a hallmark of other Proterozoic terranes that have escaped full continent-continent collision.
DOI: 10.6084/m9.figshare.13669969.v1
title: COVID19-CTset part2

description: Full description can be found in : https://github.com/mr7495/COVID-CTset This part contains CT images of 252 normal persons. If you use our data, please cite our paper: The pre-prints is available at: https://doi.org/10.1101/2020.06.08.20121541 https://www.researchgate.net/publication/341804692_A_Fully_Automated_Deep_Learning-based_Network_For_Detecting_COVID-from_a_New_And_Large_Lung_CT_Scan_Dataset https://www.preprints.org/manuscript/202006.0031/v3
DOI: 10.6084/m9.figshare.21529557.v1
title: SMF and SCRM

description: Sequences of SMF and SCRM genes in bryophytes
DOI: 10.6084/m9.figshare.5125456.v1
title: Supplementary Material for: Preoperative Protective Stenting of the Internal Carotid Artery in the Management of Complex Head and Neck Paragangliomas: Long-Term Results

description: <b><i>Objectives:</i></b> To investigate the long-term results of preoperative stenting of the internal carotid artery (ICA) in complex head and neck paragangliomas (HNP) as well as to report on indications and technical details of the procedure. <b><i>Method:</i></b> A comprehensive retrospective review of patients affected by HNP, consecutively operated on and preoperatively treated with stenting of the ICA in a quaternary referral skull base center, was performed. <b><i>Results:</i></b> Nineteen patients affected by complex HNP were identified, on whom 21 preoperative stenting procedures were performed. The mean follow-up period after stent insertion was 53.8 months; the patients' age ranged from 33 to 56 years. Fourteen patients were affected by tympanojugular paragangliomas, 4 by vagal paragangliomas and 1 by bilateral carotid body tumors. Five patients presented with recurrent tumors, while 7 presented with multiple or bilateral HNP. There were no complications associated with endovascular procedures. Total tumor removal was accomplished in 52.4% of the cases with 1 recurrence. An advanced stage was the main factor conditioning total removal. Clinical control was obtained in 80% of the patients with residual disease. Total tumor removal from and around the ICA was obtained in 95.2% of the cases. Long-term stent patency was evident in 20 of 21 cases. <b><i>Conclusions:</i></b> Preoperative stenting of the ICA represents a safe and effective procedure in selected cases, obviating the need for balloon occlusion or bypass procedures and reducing the risk of intraoperative vascular injury.
DOI: 10.6084/m9.figshare.8969135.v1
title: Additional file 14: of Discovery and characterization of the evolution, variation and functions of diversity-generating retroelements using thousands of genomes and metagenomes

description: Table S9. Matching result of target genes in nr database. URL: http://cgm.sjtu.edu.cn/index/pub/software/MetaCSST/supplementary/Supplementary_Table_9.xlsx (XLSX 542 kb)
DOI: 10.15468/dl.njxayg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina silus (Ascanius, 1775)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((44.9096 1.1987,44.9648 1.2321,44.9648 1.8496,35.9648 1.8496,35.9648 -7.1504,40.3029 -7.1504,40.4263 -6.8134,40.0733 -6.4249,39.9535 -5.9102,40.3587 -5.2718,40.3515 -4.7573,40.0702 -4.4392,40.3811 -3.7186,40.7402 -3.0348,41.8195 -2.1723,43.8399 0.2902,44.9096 1.1987))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013311-250525065834625/datasets/export for details.
DOI: 10.17632/65mz2szz5t
title: Semtex: A spectral element–Fourier solver for the incompressible Navier–Stokes equations in cylindrical or Cartesian coordinates

description: Semtex enables direct numerical simulation (DNS) of the incompressible Navier–Stokes equations by coupling continuous-Galerkin nodal spectral element–Fourier spatial discretisation with semi-implicit temporal integration via a time-splitting scheme. Transport of a scalar quantity may be included. The analyst has a choice of Cartesian or cylindrical coordinate systems. Domain geometries and solutions may be two-dimensional with spectral element decomposition of arbitrary planar shapes, or made three-dimensional by extrusion along a spatially homogeneous direction in which Fourier expansions are employed. For three-dimensional solutions, MPI may be used to support parallel execution. Various body forces, including Boussinesq buoyancy and Coriolis terms may be added to the momentum equation to simulate e.g. the effects of stratification and thermal expansion or reference frame rotation. Parallel decomposition is performed in the Fourier dimension only, and two-dimensional elliptic systems in the plane are solved for the spectral element discretisation using direct (Cholesky) or iterative (conjugate-gradient) methods. Semtex includes a suite of additional tools for generating initial conditions and model configurations, for post processing and for analysis of model output.
DOI: 10.17632/cp3352x5kr
title: Programming effects of intrauterine hyperthermia on adrenal gland development

description: Animals and Adrenal Gland Collection Procedures.

Multiparous pregnant Holstein cows, in their dry period (preceding lactation), were exposed to environmental heat stress (Temperature-Humidity Index &gt; 68) with access to shade and natural ventilation (HS, n = 41), or provided active cooling (CL) via access to shade plus fans, and water soakers (n = 41) to maintain thermoneutrality. The treatments of heifers born to these cows were reflected by their treatment during the dry period. Thus, female calves (heifers) born to HS dams were considered HS, and heifers born to CL dams were considered CL. Unless assigned to euthanasia at birth (d 0), heifers were fed 3.78 L if high-quality colostrum (protein concentration &gt; 21%) within 2 h of birth (0.8 ± 0.5 h). Prophylactic interventions and vaccinations were performed according to the farm standard operating protocols and are available at Dado-Senn et al. (2021). 

Six heifers from each treatment were euthanized at birth (day 0). The remaining heifers were raised as a cohort, receiving the same postnatal management and nutrition, to isolate the in utero effects. A second subset of six heifers per group was euthanized one week after weaning (day 63). Adrenal glands were located above the kidneys and carefully dissected and washed in sterile PBS. The right adrenal was fixed in 10% NBF, and the left adrenal was bisected and snap-frozen in liquid nitrogen for RNA-sequencing.
DOI: 10.17632/tt8j3bhy5w
title: Data for: Cerebellar Repetitive Transcranial Magnetic Stimulation (rTMS) for Essential Tremor: a double-blind, sham-controlled, crossover, add-on clinical trial

description: Data is owned by Mashhad University of Medical Sciences, Deputy of Research. Website: www.mums.ac.ir
DOI: 10.6084/m9.figshare.12919208.v2
title: Caulobacter crescentus operon annotation

description: An improved annotation of <i>C. crescentus</i> operons generated from an integrated transcriptome analysis using 5’ Global RACE, Rend-seq, and RNA-seq data. A summary of this data is included as an excel file.<br>NA1000_8_20_20.gb is the gene annotation for C. crescentus downloaded from genbank on 8/20/2020. NA1000_operons.gb is a genbank file containing the operon annotation. Artemis loadable data files were included for the 5' global RACE, Rend-seq, and rifseq datasets. To load these files into artemis, first load the NA1000 genome genbank file (NA1000_8_20_20.gb). Next, under file, select "Read an Entry .." and load the NA1000_operons.gb. To visualize each raw dataset, under graph select "add user plot .." and select the desired raw datafiles.
DOI: 10.6084/m9.figshare.22678759.v6
title: Priming effect stimulates carbon release from thawed permafrost

description: This dataset is composed of two datasets. Dataset1 includes geographic location, soil layer thickness, soil organic carbon, bulk density, soil organic carbon density, basal mirobial respiration, cumulative priming effect and relative priming effect across 24 sampling sites on the Tibetan Plateau. Dataset2 includes CO2 emission rate and δ13C values across 24 sampling sites during the 60-day incubation. At each site, both CO2 emission rate and δ13C values of three parallel samples were measured for 9 times on days 1, 2, 4, 9, 15, 22, 30, 45, and 60.
DOI: 10.6084/m9.figshare.24829965.v1
title: <b>A</b><b>symmetric and parallel subgenome selection</b><b> co-shape common carp domestication</b>

description: We detected selection sweeps and genome-wide genetic variations associated with scale reduction, vibrant skin color, and high growth rate in common carp domestication through utilizing integrated population genetics approaches.
DOI: 10.17632/39xmcn87d9
title: Using OMOPSO & MMOPSO algorithms on water distribution systems design.

description: The particle swarm optimization, PSO, was firstly developed by Kennedy & Eberhart (1995) to solve simple single-objective continuous optimization problems. This algorithm depends mainly on imitating the concept of swarm intelligence which is extensively found in birds flocks or fish schools. The algorithm initiates a prespecified number of flying particles that are led by a leader which moves towards the area of the global optimum solution with the most reasonable direction and flying speed. The algorithm keeps iterating while improving the positions and flying speeds for all the particles by following the particles’ leader. Eventually, the algorithm may reach the global optimum or may fall in local optima (if any). Coello Coello & Lechuga (2002) extended the usage of the PSO algorithm to adapt with multi-objective optimization problems by providing an external archive to store the set of non-dominated solutions that may be found during the search. The original multi-objective particle swarm optimization, OMOPSO, algorithm usually suffers from some difficulties when it is applied in the problem of designing water distribution systems (WDSs) since this problem is a combinatorial discrete NP-hard optimization problem (Montalvo et al., 2010; Surco et al., 2017). The algorithm frequently falls in local minima during the search and fails to capture the whole set of non-dominated feasible solutions after the end of search especially in medium to large search space problems. Therefore, a trial is made to improve the performance of the OMOPSO in designing WDSs by developing a modified multi-objective particle swarm optimization, MMOPSO. The modifications include using some strategies to improve the overall convergence and diversity of the final non-dominated feasible set of solutions such as; the self-adaptive PSO parameters strategy, the selection strategy of the external archive members, the regeneration-on-collision strategy, and the adaptive population size strategy. In the subsequent sections, the pseudo-codes of the OMOPSO and MMOPSO are presented, the explanations of using both algorithms are provided, and an example of using both algorithms is illustrated.
DOI: 10.17632/wyjy6pr445
title: Code for FEBrNet

description: The research on AI-assisted breast diagnosis has primarily been based on static images. It is unclear whether it represents the best diagnostic image. To explore the method of capturing complementary responsible frames from breast ultrasound screening, we developed a feature entropy breast network (FEBrNet) to select responsible frames from breast ultrasound screenings. This repository contains the code for FEBrNet and the necessary ultrasound screening demos.
DOI: 10.6084/m9.figshare.22592380.v1
title: mitomiRdb database

description: mitomiRdb database. SQLite format.
DOI: 10.17632/bh98k2rjd4
title: Raw data used for regression analysis  within stata format

description: This is data used for regression model in Stata format
DOI: 10.17632/nbc9xpwv96
title: Ground Based SAR Data Obtained With Different Polarizations

description: The dataset consists of 150 pairs of Ground Based SAR data recorded using horizontal and vertical polarization. 
All data is recorded using GBSAR-Pi. GBSAR-Pi works in stop-and-go mode. GBSAR sensor is FMCW (Frequency Modulated Continuous Wave) radar with central frequency at 24 GHz. Total GBSAR aperture is 60 cm with 1 cm step size (60 steps). FMCW radar periodically transmits sawtooth signal every 155 ms. 

Scene
GBSARP-Pi recorded scenes which contained three equally spaced objects. The objects were set approximately 30 cm away from the radar. Resulting matrix obtained after one recording has dimensions of 1024x60. 1024 represents the number of frequency points, while 60 is the number of GBSAR steps. That matrix is split into three segments each of which covered one object. The dimensions of one segment are 1024x20. 
Given dataset includes 300 examples of such segments. Each scene is recorded with horizontal (HH) and vertical (VV) polarization. Therefore, the dataset contains 150 pairs of the same segment observed with different polarizations. 

Classes
The observed objects were approximately of same size but made of different materials (aluminum, glass, plastic) and had different shapes (cylinder and cuboid). Each of the six combinations of materials and shapes are represented by one object and each object stands for one class. Six classes and their marks are:
PR - plastic cylinder 
PS - plastic cuboid
GR - glass cylinder 
GS - glass cuboid
AR - aluminum cylinder
AS - aluminum cuboid

Naming of the files
Class mark is based on the material of the object and its shape. The rest of the filename is following:
{class mark}_{position in the scene (1, 2 or 3)}_{polarization}_{recording id}.npy

Therefore, 'AR_1_hh_21' and 'AR_1_vv_21' represent the same object recorded in the same scene conditions (recording id) but with different polarizations (horizontal and vertical, respectively).

Data format
GBSAR matrices are given in .npy format. The dimensions of the matrices are 1024x20.

This work was supported in part by Croatian Science Foundation (HRZZ) under the project number IP-2019-04-1064.

[1] Kačan M, Turčinović F, Bojanjac D, Bosiljevac M. Deep Learning Approach for Object Classification on Raw and Reconstructed GBSAR Data. Remote Sensing. 2022; 14(22):5673. https://doi.org/10.3390/rs14225673
DOI: 10.6084/m9.figshare.11894661.v2
title: Processed bulk naive CD4 T cell RNA-seq, SingleCellExperiment & DESeqDataSet objects

description: Processed naive CD4 T cell RNAseq data from human samples. The contents are two .rds files, which can be read into R using readRDS(). One represents a SingleCellExperiment class object, and the other a DESeqDataSet object. These files were generated using the raw data of similar name in this project, as well as the code stored here: https://github.com/dtm2451/ProgressiveHematopoiesis