cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.prubnr
title: Occurrence Download

description: A dataset containing 3582 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Viburnum propinquum, Viburnum punctatum, Viburnum pyramidatum, Viburnum sempervirens, Viburnum squamulosum)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3582 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036724-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k4usew
title: Occurrence Download

description: A dataset containing 19553 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bernieridae)",
 "Geometry POLYGON((-25.3605576 -34.8220024,63.4957581 -34.8220024,63.4957581 37.3404121,-25.3605576 37.3404121,-25.3605576 -34.8220024))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Continent is one of (Africa)"
 ]
}

 The dataset includes 19553 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036725-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30818324
title: <b>Student Reflections on Problem-Based Learning and Structured Workflows in an IT Project Management Course in Botswana</b>

description: This study reports a qualitative, design-based case of a problem-based learning module that integrated structured project management workflows (roles, staged deliverables, meetings, decision logs) in an undergraduate IT Project Management course. Data comprised 23 student reflection reports and selected artefacts, analysed using thematic analysis. Students reported that structured workflows made expectations visible, supported communication, coordination, planning, and risk awareness, and helped them rehearse workplace behaviours and professional identity. They also highlighted constraints, including uneven participation, time pressure, and digital infrastructure issues. We propose context-sensitive design principles for implementing workflow-rich PBL in Global South computing programmes to strengthen employability-oriented learning outcomes and outline priorities for iterative design and evaluation.
DOI: 10.6084/m9.figshare.30818324.v1
title: <b>Student Reflections on Problem-Based Learning and Structured Workflows in an IT Project Management Course in Botswana</b>

description: This study reports a qualitative, design-based case of a problem-based learning module that integrated structured project management workflows (roles, staged deliverables, meetings, decision logs) in an undergraduate IT Project Management course. Data comprised 23 student reflection reports and selected artefacts, analysed using thematic analysis. Students reported that structured workflows made expectations visible, supported communication, coordination, planning, and risk awareness, and helped them rehearse workplace behaviours and professional identity. They also highlighted constraints, including uneven participation, time pressure, and digital infrastructure issues. We propose context-sensitive design principles for implementing workflow-rich PBL in Global South computing programmes to strengthen employability-oriented learning outcomes and outline priorities for iterative design and evaluation.
DOI: 10.15468/dl.s8rn46
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhinolophus canuti",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 35 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036727-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m7atj5
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paradoneis harpagonea",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036728-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12595240
title: Spatial cartography of human thymus enables the geopositioning of rare mimetic thymic epithelial cells

description: In this study, we applied the Stereo-seq spatial transcriptomics method to establish a high-resolution spatial atlas for the human fetal and pediatric thymus. We profiled fetal thymic tissues in the second trimester at 13, 14, 17, and 18 weeks post-conception, and in pediatric ages of 7 weeks and 2, 5, and 6 years. 




A01785D6.tissue.gef
Human fetal: 13w spatial transcriptomics count data


A01785C6.tissue.gef
Human fetal: 18w spatial transcriptomics count data


C02931A1B3.tissue.gef
Human pediatric: 7w spatial transcriptomics count data


B01809D6.tissue.gef
Human fetal: 14w spatial transcriptomics count data


D02672A5.tissue.gef
Human pediatric: 5y spatial transcriptomics count data


SS200000128BR_E1.gef
Human fetal: 17w spatial transcriptomics count data


C02935F5.tissue.gef
Human pediatric: 2y spatial transcriptomics count data


C04297D1.tissue.gef
Human pediatric: 6y spatial transcriptomics count data


B01809E3.tissue.gef
Mouse: 1-month spatial transcriptomics count data


SS200001298TL_F5.tissue.gef
Mouse: 3-month spatial transcriptomics count data


Data_manu_20250826.rds
Integrated ScRNA-seq data Seurat R object 


shinyApp_scRNA.zip
Web App files for viewing integrated scRNA-seq data in ShinyApp


Spatial_17week_fetal_bin50_ShinyApp.zip
Web App files for viewing integrated spatial fetal 17w data in ShinyApp


Spatial_shinyApp_Feta_14w_bin50_select.zip
Web App files for viewing integrated spatial fetal 14w data in ShinyApp


A03994E6.tissue.gef
Human pediatric: 7w spatial transcriptomics count data (Cite-Stereoseq)


A03994E6.protein.tissue.gef
Human pediatric: 7w spatial protein count data (Cite-Stereoseq)
DOI: 10.5281/zenodo.12595241
title: Spatial cartography of human thymus enables the geopositioning of rare mimetic thymic epithelial cells

description: In this study, we applied the Stereo-seq spatial transcriptomics method to establish a high-resolution spatial atlas for the human fetal and pediatric thymus. We profiled fetal thymic tissues in the second trimester at 13, 14, 17, and 18 weeks post-conception, and in pediatric ages of 7 weeks and 2, 5, and 6 years. 




A01785D6.tissue.gef
Human fetal: 13w spatial transcriptomics count data


A01785C6.tissue.gef
Human fetal: 18w spatial transcriptomics count data


C02931A1B3.tissue.gef
Human pediatric: 7w spatial transcriptomics count data


B01809D6.tissue.gef
Human fetal: 14w spatial transcriptomics count data


D02672A5.tissue.gef
Human pediatric: 5y spatial transcriptomics count data


SS200000128BR_E1.gef
Human fetal: 17w spatial transcriptomics count data


C02935F5.tissue.gef
Human pediatric: 2y spatial transcriptomics count data


C04297D1.tissue.gef
Human pediatric: 6y spatial transcriptomics count data


B01809E3.tissue.gef
Mouse: 1-month spatial transcriptomics count data


SS200001298TL_F5.tissue.gef
Mouse: 3-month spatial transcriptomics count data


Data_manu_20250826.rds
Integrated ScRNA-seq data Seurat R object 


shinyApp_scRNA.zip
Web App files for viewing integrated scRNA-seq data in ShinyApp


Spatial_17week_fetal_bin50_ShinyApp.zip
Web App files for viewing integrated spatial fetal 17w data in ShinyApp


Spatial_shinyApp_Feta_14w_bin50_select.zip
Web App files for viewing integrated spatial fetal 14w data in ShinyApp


A03994E6.tissue.gef
Human pediatric: 7w spatial transcriptomics count data (Cite-Stereoseq)


A03994E6.protein.tissue.gef
Human pediatric: 7w spatial protein count data (Cite-Stereoseq)
DOI: 10.15468/dl.c9hexb
title: Occurrence Download

description: A dataset containing 3595431 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plantae, Undaria pinnatifida, Lindavia intermedia)",
 "Country is New Zealand",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 0",
 "DecimalLongitude is greater than or equal to -180",
 "DecimalLatitude is greater than or equal to -90",
 {
 "not" : {
 "or" : [
 "Issue is Zero coordinate",
 "Issue is Coordinate out of range",
 "Issue is Country coordinate mismatch"
 ]
 }
 }
 ]
}

 The dataset includes 3595431 records from 299 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036690-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rfez6m
title: Occurrence Download

description: A dataset containing 1709 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Viburnum sympodiale, Viburnum tengyuehense, Viburnum ternatum, Viburnum trabeculosum, Viburnum yunnanense)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1709 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036732-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wby98j
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bombycillidae)",
 "Geometry POLYGON((-25.3605576 -34.8220024,63.4957581 -34.8220024,63.4957581 37.3404121,-25.3605576 37.3404121,-25.3605576 -34.8220024))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Continent is one of (Africa)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036733-251120083545085/datasets/export for details.
DOI: 10.5281/zenodo.17851992
title: SEM Withered Plant (BSE, 2025-12-08) — Kikoh Matsuura (Art–Science Archive)

description: SEM Withered Plant (BSE, 2025-12-08) is a child dataset within the series SEM Withered Plant (BSE Series) by Kikoh Matsuura.

It contains raw, uncompressed BMP images (without embedded scale bars) and JPG preview images (with overlaid scale bars), acquired on 2025-12-08 with a personally owned TECHNEX TinySEM M3-i using the BSE detector under high-vacuum conditions.

This dataset constitutes the primary observation data underlying the art–science work Withered Plant.The images capture the hidden microstructures of a dried plant fragment, prepared with an Au sputter coating and observed at an accelerating voltage of 17 kV with a label magnification of 60×.

By preserving both raw scientific evidence and its artistic context, this record stands as a unique trace at the boundary between art and science.

It links to the parent series record via the “Related works” field (IsPartOf) and contributes to the long-term archival of observation as both scientific evidence and a cultural record.
DOI: 10.5281/zenodo.17851991
title: SEM Withered Plant (BSE, 2025-12-08) — Kikoh Matsuura (Art–Science Archive)

description: SEM Withered Plant (BSE, 2025-12-08) is a child dataset within the series SEM Withered Plant (BSE Series) by Kikoh Matsuura.

It contains raw, uncompressed BMP images (without embedded scale bars) and JPG preview images (with overlaid scale bars), acquired on 2025-12-08 with a personally owned TECHNEX TinySEM M3-i using the BSE detector under high-vacuum conditions.

This dataset constitutes the primary observation data underlying the art–science work Withered Plant.The images capture the hidden microstructures of a dried plant fragment, prepared with an Au sputter coating and observed at an accelerating voltage of 17 kV with a label magnification of 60×.

By preserving both raw scientific evidence and its artistic context, this record stands as a unique trace at the boundary between art and science.

It links to the parent series record via the “Related works” field (IsPartOf) and contributes to the long-term archival of observation as both scientific evidence and a cultural record.
DOI: 10.15468/dl.s9wgum
title: Occurrence Download

description: A dataset containing 1191 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Setipinna tenuifilis"
 ]
}

 The dataset includes 1191 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036734-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30818420
title: <b>Data and code: In-house Computational Infrastructure and Carbon Disclosure Quality: Evidence from Internet Data Center Licensing of Chinese Listed Firms</b>

description: The empirical analysis is based on authoritative data sources, primarily obtained from the CSMAR database. This study employs panel data of Chinese A-share listed companies over the period 2017-2023 to investigate how in-house computational infrastructure influences the quality of corporate carbon disclosure. The key identification variable is whether a firm possesses an Internet Data Center (IDC) operating license approved by the Ministry of Industry and Information Technology (MIIT), which reflects the establishment of proprietary computational capacity rather than reliance on third-party cloud services.
DOI: 10.6084/m9.figshare.30818420.v1
title: <b>Data and code: In-house Computational Infrastructure and Carbon Disclosure Quality: Evidence from Internet Data Center Licensing of Chinese Listed Firms</b>

description: The empirical analysis is based on authoritative data sources, primarily obtained from the CSMAR database. This study employs panel data of Chinese A-share listed companies over the period 2017-2023 to investigate how in-house computational infrastructure influences the quality of corporate carbon disclosure. The key identification variable is whether a firm possesses an Internet Data Center (IDC) operating license approved by the Ministry of Industry and Information Technology (MIIT), which reflects the establishment of proprietary computational capacity rather than reliance on third-party cloud services.
DOI: 10.6084/m9.figshare.30818479
title: Final Biomarker Confirmation from New collagen peptide markers from New Guinea fauna: Identifying archaeological bone in the tropics

description: The final confirmed markers for each of the 24 taxa after LC-MS/MS analyses
DOI: 10.6084/m9.figshare.30818479.v1
title: Final Biomarker Confirmation from New collagen peptide markers from New Guinea fauna: Identifying archaeological bone in the tropics

description: The final confirmed markers for each of the 24 taxa after LC-MS/MS analyses
DOI: 10.6084/m9.figshare.30818485
title: Reference Fauna data from New collagen peptide markers from New Guinea fauna: Identifying archaeological bone in the tropics

description: Details for each of the archaeological and modern reference specimens used in the study
DOI: 10.6084/m9.figshare.30818485.v1
title: Reference Fauna data from New collagen peptide markers from New Guinea fauna: Identifying archaeological bone in the tropics

description: Details for each of the archaeological and modern reference specimens used in the study
DOI: 10.15468/dl.e4uwbj
title: Occurrence Download

description: A dataset containing 37309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Vulpes vulpes"
 ]
}

 The dataset includes 37309 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036730-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30818491
title: ZooMS all samples results from New collagen peptide markers from New Guinea fauna: Identifying archaeological bone in the tropics

description: Raw data of all ZooMS sample results with identified markers
DOI: 10.6084/m9.figshare.30818491.v1
title: ZooMS all samples results from New collagen peptide markers from New Guinea fauna: Identifying archaeological bone in the tropics

description: Raw data of all ZooMS sample results with identified markers
DOI: 10.5281/zenodo.13947395
title: IMC and scRNA-seq raw data of paired lung adenocarcinoma and healthy lung samples

description: Deposition of raw and processed data used in the publication:

CD4⁺-CD8⁺ T Cell Interaction via AICL-KLRF1 Sustains Cytokine Production in Pre-exhausted T Cells

 

The deposition includes:



IMC: raw TMA-wise .mcd and .txt output files from Hyperion, TMA zipped into "OT3 - Lung TMA block 1.zip"

IMC: All masks generated via Ilastik - CellProfiler (Bodenmiller route with CellProfiler v3) zipped into "masks.zip"

IMC: metadata file listing each ROI, TMA ("OT"), mouse_ID and condition as excel file "meta_IMlungpanel_CD3polygon.xlsx"

IMC: processed raw data at single-cell resolution zipped into "IMC_cell.data.zip"

scRNA-seq: processed anndata to create panels in Figure 6 and related Supplemental Figures zipped into "Fig6_processed_scRNAseq.zip"


 

IMC:

The data has been processed with a heavily adapted version of the Spectre code written in R language. Singe-cell data is both available here and in the Sawitzki github repo, where the code can be found. Here, "IMC_cell.data.zip" only contains the entire data set as .csv file "all.cells.csv". Be aware that this .csv file contains the positive controls of each TMA and is not gated for any immune cell types, nor does it include lymph node masks or spatial distances to tumor tissue.

 

scRNA-seq:

the data is originally published in Bischoff et al. but the samples were re-sequenced for 100 immune-targeted genes and re-analyzed. The code to reproduce the figure panels of the scRNA-seq data can be found on the Sawitzki github repo KLRF1-Tpex in "Figure Panels/Fig6"
DOI: 10.5281/zenodo.13947394
title: IMC and scRNA-seq raw data of paired lung adenocarcinoma and healthy lung samples

description: Deposition of raw and processed data used in the publication:

CD4⁺-CD8⁺ T Cell Interaction via AICL-KLRF1 Sustains Cytokine Production in Pre-exhausted T Cells

 

The deposition includes:



IMC: raw TMA-wise .mcd and .txt output files from Hyperion, TMA zipped into "OT3 - Lung TMA block 1.zip"

IMC: All masks generated via Ilastik - CellProfiler (Bodenmiller route with CellProfiler v3) zipped into "masks.zip"

IMC: metadata file listing each ROI, TMA ("OT"), mouse_ID and condition as excel file "meta_IMlungpanel_CD3polygon.xlsx"

IMC: processed raw data at single-cell resolution zipped into "IMC_cell.data.zip"

scRNA-seq: processed anndata to create panels in Figure 6 and related Supplemental Figures zipped into "Fig6_processed_scRNAseq.zip"


 

IMC:

The data has been processed with a heavily adapted version of the Spectre code written in R language. Singe-cell data is both available here and in the Sawitzki github repo, where the code can be found. Here, "IMC_cell.data.zip" only contains the entire data set as .csv file "all.cells.csv". Be aware that this .csv file contains the positive controls of each TMA and is not gated for any immune cell types, nor does it include lymph node masks or spatial distances to tumor tissue.

 

scRNA-seq:

the data is originally published in Bischoff et al. but the samples were re-sequenced for 100 immune-targeted genes and re-analyzed. The code to reproduce the figure panels of the scRNA-seq data can be found on the Sawitzki github repo KLRF1-Tpex in "Figure Panels/Fig6"
DOI: 10.15468/dl.hrw5p8
title: Occurrence Download

description: A dataset containing 301 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paradoneis ilvana",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 301 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036736-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rmbv6g
title: Occurrence Download

description: A dataset containing 5462455 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "KingdomKey is Plantae",
 "BasisOfRecord is one of (Fossil, Material sample, Material citation, Specimen)"
 ]
}

 The dataset includes 5462455 records from 1285 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036702-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u998v3
title: Occurrence Download

description: A dataset containing 3818 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Alchemilla filicaulis Buser"
 ]
}

 The dataset includes 3818 records from 141 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073725-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-34976
title: Correspondence book No.5 of Pentecostal Missionary Union [PMU], 1923-1925

description: [description english/roman)] Pentecostal Missionary Union [PMU] Correspondence book No. 5 including 57 pages of subject index; 2042 pages of PMU outgoing correspondence.
DOI: 10.15468/dl.ek9g86
title: Occurrence Download

description: A dataset containing 151 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Julidochromis dickfeldi Staeck, 1975"
 ]
}

 The dataset includes 151 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0336421-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k7se9q
title: Occurrence Download

description: A dataset containing 16073 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-73.92975 11.02629,-73.90778 10.56224,-73.4848 10.50283,-73.17169 10.64863,-73.13324 10.9508,-73.47931 11.05325,-73.92975 11.02629))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 16073 records from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0147187-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nap9pm
title: Occurrence Download

description: A dataset containing 1347 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Caiman latirostris (Daudin, 1801)"
 ]
}

 The dataset includes 1347 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073740-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-35088
title: Correspondence book No.5 of Pentecostal Missionary Union [PMU], 1923-1925

description: [description english/roman)] Pentecostal Missionary Union [PMU] Correspondence book No. 5 including 57 pages of subject index; 2042 pages of PMU outgoing correspondence.