cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21900735.v1
title: contig_annotations.zip

description: Atherosclerotic plaques form in the inner layer of arteries triggering heart attacks and strokes. Although T-cells have been detected in atherosclerosis, tolerance dysfunction as a disease driver remains unexplored. Here, we examined tolerance checkpoints in atherosclerotic plaques, artery tertiary lymphoid organs, and lymph nodes in mice burdened by advanced atherosclerosis, via single-cell RNA sequencing paired with single T-cell receptor sequencing. In this study, ApoE-/- mice on a C57BL/6 background and C57BL/6 WT mice were housed in the specific pathogen-free animal facilities of Munich University with a 12 h light/dark cycle, air-conditioned (23° C and 60% relative humidity). All mice were 78-85 weeks old and had been maintained on a standard rodent chow. Animal procedures were approved by the Regierung of Oberbayern according to the guidelines of the local Animal Use and Care Committee and the National Animal Welfare Laws. Mice were euthanized by ketamine hydrochloride and xylazine hydrochloride. Blood was collected by cardiac puncture. Perfusion was performed from the left ventricle with 10 ml 5 mM EDTA buffer, 20 ml PBS and 20 ml FACS buffer, respectively. RLNs were collected under a dissecting microscope. To collect plaques and ATLOs, adipose tissue and paraaortic LNs were carefully removed. The whole aorta was dissected and collected in cell culture dishes with pre-cooled FACS buffer. The aorta was opened in the longitudinal direction, the plaque tissues were carefully removed using curved forceps (Dumont #5/45, Fine Science Tools) under the dissecting microscope. The remaining aorta was collected as ATLOs. RLNs, ATLOs and plaques. Three separated cohorts of mice were used: (i) pools of 3 ApoE-/- and 3 WT mice were used to collect plaques, ATLOs, and RLNs, and pools of 5 ApoE-/- and 5 WT mice were used to collect blood in the first cohort; (ii) Cell hashtags (hashtags, Biolegend, TotalSeq™ C) were used to label 4 ApoE-/- and 4 WT mice individually to collect ATLOs and RLNs; (iii) Pools of 5 ApoE-/- mice to collect plaque tissues. Single cell suspensions are prepared and stained with fluorescent antibodies for single live leukocyte sorting Next, appropriate single cell suspension are loaded onto 10x Genomics chip to generate gel bead in emulsions.
DOI: 10.5281/zenodo.7540279
title: Paper Proximal fibula

description: Supplementary information: landmark coordinates, and materials
DOI: 10.5281/zenodo.7540278
title: Paper Proximal fibula

description: Supplementary information: landmark coordinates, and materials
DOI: 10.5517/ccdc.csd.cc13cv9m
title: CCDC 1024280: Experimental Crystal Structure Determination

description: Related Article: Di-Ming Chen, Xue-Jing Zhang|2022|CrystEngComm|25|467|doi:10.1039/D2CE01496C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc13cvbn
title: CCDC 1024281: Experimental Crystal Structure Determination

description: Related Article: Di-Ming Chen, Xue-Jing Zhang|2022|CrystEngComm|25|467|doi:10.1039/D2CE01496C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc254tw1
title: CCDC 2000643: Experimental Crystal Structure Determination

description: Related Article: Arezoo Saadati, Hadi Amiri Rudbari, Mahnaz Aryaeifar, Olivier Blacque, Isabel Correia, Mohammad Khairul Islam, Dennis Woschko, Takin Haj Hassani Sohi, Christoph Janiak, Mohammed Enamullah|2023|CrystEngComm|25|365|doi:10.1039/D2CE01311H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc254ty3
title: CCDC 2000645: Experimental Crystal Structure Determination

description: Related Article: Arezoo Saadati, Hadi Amiri Rudbari, Mahnaz Aryaeifar, Olivier Blacque, Isabel Correia, Mohammad Khairul Islam, Dennis Woschko, Takin Haj Hassani Sohi, Christoph Janiak, Mohammed Enamullah|2023|CrystEngComm|25|365|doi:10.1039/D2CE01311H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc254v06
title: CCDC 2000647: Experimental Crystal Structure Determination

description: Related Article: Arezoo Saadati, Hadi Amiri Rudbari, Mahnaz Aryaeifar, Olivier Blacque, Isabel Correia, Mohammad Khairul Islam, Dennis Woschko, Takin Haj Hassani Sohi, Christoph Janiak, Mohammed Enamullah|2023|CrystEngComm|25|365|doi:10.1039/D2CE01311H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc254v28
title: CCDC 2000649: Experimental Crystal Structure Determination

description: Related Article: Arezoo Saadati, Hadi Amiri Rudbari, Mahnaz Aryaeifar, Olivier Blacque, Isabel Correia, Mohammad Khairul Islam, Dennis Woschko, Takin Haj Hassani Sohi, Christoph Janiak, Mohammed Enamullah|2023|CrystEngComm|25|365|doi:10.1039/D2CE01311H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc254v4b
title: CCDC 2000651: Experimental Crystal Structure Determination

description: Related Article: Arezoo Saadati, Hadi Amiri Rudbari, Mahnaz Aryaeifar, Olivier Blacque, Isabel Correia, Mohammad Khairul Islam, Dennis Woschko, Takin Haj Hassani Sohi, Christoph Janiak, Mohammed Enamullah|2023|CrystEngComm|25|365|doi:10.1039/D2CE01311H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29gj0b
title: CCDC 2129111: Experimental Crystal Structure Determination

description: Related Article: Mei Zhu, Shuqi Ma, Huiyang Dong, Qing Zhong, Yi Liu|2023|CrystEngComm|25|403|doi:10.1039/D2CE01200F
description: Related Article: Zhu Mei Dong HuiYang Ma ShuQi Zhong Qing|2021|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29gj1c
title: CCDC 2129112: Experimental Crystal Structure Determination

description: Related Article: Mei Zhu, Shuqi Ma, Huiyang Dong, Qing Zhong, Yi Liu|2023|CrystEngComm|25|403|doi:10.1039/D2CE01200F
description: Related Article: Zhu Mei Dong HuiYang Ma ShuQi Zhong Qing|2021|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29gj2d
title: CCDC 2129113: Experimental Crystal Structure Determination

description: Related Article: Mei Zhu, Shuqi Ma, Huiyang Dong, Qing Zhong, Yi Liu|2023|CrystEngComm|25|403|doi:10.1039/D2CE01200F
description: Related Article: Zhu Mei Dong HuiYang Ma ShuQi Zhong Qing|2021|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29gj3f
title: CCDC 2129114: Experimental Crystal Structure Determination

description: Related Article: Mei Zhu, Shuqi Ma, Huiyang Dong, Qing Zhong, Yi Liu|2023|CrystEngComm|25|403|doi:10.1039/D2CE01200F
description: Related Article: Zhu mei Dong HuiYang Ma shuqi Zhong qing|2021|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29gj4g
title: CCDC 2129115: Experimental Crystal Structure Determination

description: Related Article: Mei Zhu, Shuqi Ma, Huiyang Dong, Qing Zhong, Yi Liu|2023|CrystEngComm|25|403|doi:10.1039/D2CE01200F
description: Related Article: Dong HuiYang|2021|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29gj5h
title: CCDC 2129116: Experimental Crystal Structure Determination

description: Related Article: Mei Zhu, Shuqi Ma, Huiyang Dong, Qing Zhong, Yi Liu|2023|CrystEngComm|25|403|doi:10.1039/D2CE01200F
description: Related Article: Dong HuiYang|2021|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b4x8p
title: CCDC 2149672: Experimental Crystal Structure Determination

description: Related Article: Arezoo Saadati, Hadi Amiri Rudbari, Mahnaz Aryaeifar, Olivier Blacque, Isabel Correia, Mohammad Khairul Islam, Dennis Woschko, Takin Haj Hassani Sohi, Christoph Janiak, Mohammed Enamullah|2023|CrystEngComm|25|365|doi:10.1039/D2CE01311H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ckz86
title: CCDC 2192018: Experimental Crystal Structure Determination

description: Related Article: Elena A. Chulanova, Ekaterina A. Radiush, Yaser Balmohammadi, Jens Beckmann, Simon Grabowsky, Andrey V. Zibarev|2022|CrystEngComm|25|391|doi:10.1039/D2CE01385A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ckz97
title: CCDC 2192019: Experimental Crystal Structure Determination

description: Related Article: Elena A. Chulanova, Ekaterina A. Radiush, Yaser Balmohammadi, Jens Beckmann, Simon Grabowsky, Andrey V. Zibarev|2022|CrystEngComm|25|391|doi:10.1039/D2CE01385A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ckzb8
title: CCDC 2192020: Experimental Crystal Structure Determination

description: Related Article: Elena A. Chulanova, Ekaterina A. Radiush, Yaser Balmohammadi, Jens Beckmann, Simon Grabowsky, Andrey V. Zibarev|2022|CrystEngComm|25|391|doi:10.1039/D2CE01385A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ckzc9
title: CCDC 2192021: Experimental Crystal Structure Determination

description: Related Article: Elena A. Chulanova, Ekaterina A. Radiush, Yaser Balmohammadi, Jens Beckmann, Simon Grabowsky, Andrey V. Zibarev|2022|CrystEngComm|25|391|doi:10.1039/D2CE01385A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ckzdb
title: CCDC 2192022: Experimental Crystal Structure Determination

description: Related Article: Elena A. Chulanova, Ekaterina A. Radiush, Yaser Balmohammadi, Jens Beckmann, Simon Grabowsky, Andrey V. Zibarev|2022|CrystEngComm|25|391|doi:10.1039/D2CE01385A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cmgl2
title: CCDC 2193454: Experimental Crystal Structure Determination

description: Related Article: Yuping Li, Yang Tao, Yunping Zhoujin, Fang Zhao, Peng-Yu Liang, Sean Parkin, Tonglei Li, Pan-Pan Zhou, Sihui Long|2022|CrystEngComm|25|432|doi:10.1039/D2CE01233B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cmgn4
title: CCDC 2193456: Experimental Crystal Structure Determination

description: Related Article: Yuping Li, Yang Tao, Yunping Zhoujin, Fang Zhao, Peng-Yu Liang, Sean Parkin, Tonglei Li, Pan-Pan Zhou, Sihui Long|2022|CrystEngComm|25|432|doi:10.1039/D2CE01233B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cmgp5
title: CCDC 2193457: Experimental Crystal Structure Determination

description: Related Article: Yuping Li, Yang Tao, Yunping Zhoujin, Fang Zhao, Peng-Yu Liang, Sean Parkin, Tonglei Li, Pan-Pan Zhou, Sihui Long|2022|CrystEngComm|25|432|doi:10.1039/D2CE01233B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cmhk2
title: CCDC 2193484: Experimental Crystal Structure Determination

description: Related Article: Yuping Li, Yang Tao, Yunping Zhoujin, Fang Zhao, Peng-Yu Liang, Sean Parkin, Tonglei Li, Pan-Pan Zhou, Sihui Long|2022|CrystEngComm|25|432|doi:10.1039/D2CE01233B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cmhn5
title: CCDC 2193487: Experimental Crystal Structure Determination

description: Related Article: Yuping Li, Yang Tao, Yunping Zhoujin, Fang Zhao, Peng-Yu Liang, Sean Parkin, Tonglei Li, Pan-Pan Zhou, Sihui Long|2022|CrystEngComm|25|432|doi:10.1039/D2CE01233B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cmhq7
title: CCDC 2193489: Experimental Crystal Structure Determination

description: Related Article: Yuping Li, Yang Tao, Yunping Zhoujin, Fang Zhao, Peng-Yu Liang, Sean Parkin, Tonglei Li, Pan-Pan Zhou, Sihui Long|2022|CrystEngComm|25|432|doi:10.1039/D2CE01233B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d2j56
title: CCDC 2206957: Experimental Crystal Structure Determination

description: Related Article: Parthasarathy Gayathri, Sasikala Ravi, Subramanian Karthikeyan, Mehboobali Pannipara, Abdullah G. Al-Sehemi, Dohyun Moon, Savarimuthu Philip Anthony|2022|CrystEngComm|25|460|doi:10.1039/D2CE01361D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d2j67
title: CCDC 2206958: Experimental Crystal Structure Determination

description: Related Article: Parthasarathy Gayathri, Sasikala Ravi, Subramanian Karthikeyan, Mehboobali Pannipara, Abdullah G. Al-Sehemi, Dohyun Moon, Savarimuthu Philip Anthony|2022|CrystEngComm|25|460|doi:10.1039/D2CE01361D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dd7xz
title: CCDC 2216311: Experimental Crystal Structure Determination

description: Related Article: Ping Tang, Xue-Xian Xie, Zi-Yuan Huang, Zhi-Yang Kuang, Song-Liang Cai, Wei-Guang Zhang, Sheng-Run Zheng|2022|CrystEngComm|25|417|doi:10.1039/D2CE01497A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d3mrx
title: CCDC 2208029: Experimental Crystal Structure Determination

description: Related Article: Yu-Hang Liu, Wen-Qi Wang, Bing-Lin Zhang, Yu-Jiao Wang, Meng-Ping Ren, Zhihong Jing, Cheng-Yang Yue|2022|CrystEngComm|25|444|doi:10.1039/D2CE01342H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dd7y0
title: CCDC 2216312: Experimental Crystal Structure Determination

description: Related Article: Ping Tang, Xue-Xian Xie, Zi-Yuan Huang, Zhi-Yang Kuang, Song-Liang Cai, Wei-Guang Zhang, Sheng-Run Zheng|2022|CrystEngComm|25|417|doi:10.1039/D2CE01497A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dfq0l
title: CCDC 2217709: Experimental Crystal Structure Determination

description: Related Article: Xue-Zhi Wang, Chuang-Wei Zhou, Bei Wang, Ya-Liang Lai, Zhao-Xia Lian, Yi-Tong Liu, Yan Yan Li, Xiao-Ping Zhou|2022|CrystEngComm|25|484|doi:10.1039/D2CE01530G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.