cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5552979
title: Data for "Heat stress reduces the contribution of diazotrophs to coral holobiont nitrogen cycling"

description: Raw data associated with publication 'Heat stress reduces the importance of diazotrophs for coral holobiont nitrogen cycling'. "Rädecker_etal_16S.csv" contains sequence abundance data of annotated 16S rRNA ASVs for all five coral colonies during control or heat stress conditions at day 10 of the experiment. "Rädecker_etal_nifH.csv" contains sequence abundance data of annotated nifH rRNA ASVs for all five coral colonies during control or heat stress conditions at day 10 of the experiment. "Rädecker_etal_N2Fix.csv" contains bulk (acetylene reduction) as well as net (15N2 assimilation) measurements of microbial nitrogen fixation for all five coral colonies during control or heat stress conditions at day 10 of the experiment. "Rädecker_etal_NanoSIMS.csvv" contains raw mass count data of coral host and algal symbiont ROIs (15 images per treatment) for one coral colony during control or heat stress conditions at day 10 of the experiment.
DOI: 10.5281/zenodo.5585357
title: Whole Brain Drosophila Larval Glia

description: Example intact whole brains from female and male Drosophila larva expressing a glial marker associated with manuscript - <strong>Intact Drosophila Whole Brain Cellular Quantitation reveals Sexual Dimorphism</strong>. Wei Jiao, Gard Spreemann, Evelyne Ruchti, Soumya Banerjee, Ying Shi, R. Steven Stowers, Kathryn Hess and Brian D. McCabe Brain Mind Institute, EPFL - Swiss Federal Institute of Technology Lausanne, Switzerland https://mccabelab.org See ReadMe file for detailed genotype and methods.
DOI: 10.6084/m9.figshare.16825822
title: Supplementary Material for: FGFR4 and Klotho Polymorphisms Are Not Associated with Cardiovascular Outcomes in Chronic Kidney Disease

description: <b><i>Introduction:</i></b> High plasma fibroblast growth factor 23 (FGF-23) predicts cardiovascular events in chronic kidney disease (CKD) patients. Experimental evidence suggests FGF receptor 4 (FGFR4) activation by FGF-23, and deficiency of the soluble form of its co-receptor Klotho promotes left-ventricular hypertrophy (LVH). To evaluate the clinical relevance of these findings, a Mendelian randomization study analyzed the association of genetic variants of FGFR4 and Klotho with echocardiographic parameters and cardiac events in CKD patients. <b><i>Methods:</i></b> The prospective Cardiovascular and Renal Outcome in CKD 2–4 Patients–The Fourth Homburg Evaluation study recruited CKD G2–G4 patients, of whom 519 consented to SNP genotyping (FGFR4: rs351855; Klotho: rs9536314). Echocardiographic examinations at baseline and 5 years later assessed prevalence of LVH by measurement of left-ventricular mass index (LVMI). Patients were followed for 5.1 ± 2.1 years for the primary endpoints of cardiac decompensation and atherosclerotic cardiovascular disease (ASCVD). <b><i>Results:</i></b> Carriers of the different alleles did neither differ in baseline LVMI (rs351855: <i>p</i> = 0.861; rs9536314: <i>p</i> = 0.379) nor in LVMI changes between baseline and follow-up (rs351855: <i>p</i> = 0.181; rs9536314: <i>p</i> = 0.995). Hundred and four patients suffered cardiac decompensation, and 144 patients had ASCVD. Time to cardiac decompensation (rs351855: <i>p</i> = 0.316; rs9536314: <i>p</i> = 0.765) and ASCVD (<i>p</i> = 0.508 and <i>p</i> = 0.800, respectively) did not differ between carriers of different alleles. <b><i>Discussion/Conclusion:</i></b> rs351855 and rs9536314 were not associated with LVMI or cardiac events. These findings do not provide evidence for a relevant clinical role of either FGFR4 stimulation or soluble form of Klotho deficiency in LVH development.
DOI: 10.6084/m9.figshare.16825822.v1
title: Supplementary Material for: FGFR4 and Klotho Polymorphisms Are Not Associated with Cardiovascular Outcomes in Chronic Kidney Disease

description: <b><i>Introduction:</i></b> High plasma fibroblast growth factor 23 (FGF-23) predicts cardiovascular events in chronic kidney disease (CKD) patients. Experimental evidence suggests FGF receptor 4 (FGFR4) activation by FGF-23, and deficiency of the soluble form of its co-receptor Klotho promotes left-ventricular hypertrophy (LVH). To evaluate the clinical relevance of these findings, a Mendelian randomization study analyzed the association of genetic variants of FGFR4 and Klotho with echocardiographic parameters and cardiac events in CKD patients. <b><i>Methods:</i></b> The prospective Cardiovascular and Renal Outcome in CKD 2–4 Patients–The Fourth Homburg Evaluation study recruited CKD G2–G4 patients, of whom 519 consented to SNP genotyping (FGFR4: rs351855; Klotho: rs9536314). Echocardiographic examinations at baseline and 5 years later assessed prevalence of LVH by measurement of left-ventricular mass index (LVMI). Patients were followed for 5.1 ± 2.1 years for the primary endpoints of cardiac decompensation and atherosclerotic cardiovascular disease (ASCVD). <b><i>Results:</i></b> Carriers of the different alleles did neither differ in baseline LVMI (rs351855: <i>p</i> = 0.861; rs9536314: <i>p</i> = 0.379) nor in LVMI changes between baseline and follow-up (rs351855: <i>p</i> = 0.181; rs9536314: <i>p</i> = 0.995). Hundred and four patients suffered cardiac decompensation, and 144 patients had ASCVD. Time to cardiac decompensation (rs351855: <i>p</i> = 0.316; rs9536314: <i>p</i> = 0.765) and ASCVD (<i>p</i> = 0.508 and <i>p</i> = 0.800, respectively) did not differ between carriers of different alleles. <b><i>Discussion/Conclusion:</i></b> rs351855 and rs9536314 were not associated with LVMI or cardiac events. These findings do not provide evidence for a relevant clinical role of either FGFR4 stimulation or soluble form of Klotho deficiency in LVH development.
DOI: 10.25451/flinders.16545558
title: Australasian Heritage Software Database

description: The Australasian Heritage Software project is a publicly-compiled and accessible database documenting Australian and New Zealand software history. The field of software history is enormous and largely undocumented. Few repositories of software or documentation exist. This project aims to collect documentation from the public - and, where feasible, source code - in order to create a picture of the software written locally, and to present this online.<br><br>Why are you doing this?<br><br>Currently, there is no central repository of information about software written or published locally. Software does not easily fit into the collecting schema or taxonomies of many institutions. As such, it is generally individuals and various online communities who hold the knowledge about local software history. We want to provide a repository for this knowledge to be centrally collected, and will make this openly accessible so that it can be used for public good purposes.<br><br>Software history is a notoriously underdeveloped field, with many histories tending to chart only particular genres, or remembering just the commercial success stories and flops. Most of what makes it into history books are stories from the UK, US and parts of Asia. Australia and New Zealand have their own computer and software histories, of course, but it is difficult to write local software histories without comprehensive records. We are keen to see these stories recorded and told more often, and the products of local innovation documented and hopefully preserved. Making informed judgements about what is historically significant and what ought to be kept requires knowing what software existed in a particular period.<br><br>Given the lack of existing centralised records of locally developed software, we are throwing the net wide and asking people to enter information on local software from any historical period, from the birth of digital computing to the present day.<br><br>Time period: The Digital Computer Era<br>Locations:<br>- Australia<br>- New Zealand
DOI: 10.25451/flinders.16545558.v1
title: Australasian Heritage Software Database

description: The Australasian Heritage Software project is a publicly-compiled and accessible database documenting Australian and New Zealand software history. The field of software history is enormous and largely undocumented. Few repositories of software or documentation exist. This project aims to collect documentation from the public - and, where feasible, source code - in order to create a picture of the software written locally, and to present this online.<br><br>Why are you doing this?<br><br>Currently, there is no central repository of information about software written or published locally. Software does not easily fit into the collecting schema or taxonomies of many institutions. As such, it is generally individuals and various online communities who hold the knowledge about local software history. We want to provide a repository for this knowledge to be centrally collected, and will make this openly accessible so that it can be used for public good purposes.<br><br>Software history is a notoriously underdeveloped field, with many histories tending to chart only particular genres, or remembering just the commercial success stories and flops. Most of what makes it into history books are stories from the UK, US and parts of Asia. Australia and New Zealand have their own computer and software histories, of course, but it is difficult to write local software histories without comprehensive records. We are keen to see these stories recorded and told more often, and the products of local innovation documented and hopefully preserved. Making informed judgements about what is historically significant and what ought to be kept requires knowing what software existed in a particular period.<br><br>Given the lack of existing centralised records of locally developed software, we are throwing the net wide and asking people to enter information on local software from any historical period, from the birth of digital computing to the present day.<br><br>Time period: The Digital Computer Era<br>Locations:<br>- Australia<br>- New Zealand
DOI: 10.25957/5bab10eb0deef
title: Embryonic heart rates and numbers of song elements of superb fairy-wrens recorded at Cleland Wildlife Park and Newland Head Conservation Park (South Australia) between 2012 and 2014
DOI: 10.6084/m9.figshare.16843164
title: Source Code from Goal-directed graph construction using reinforcement learning

description: Contains all source code used to obtain the results reported in the manuscript.
DOI: 10.6084/m9.figshare.16843170.v1
title: Real-World Network Data from Goal-directed graph construction using reinforcement learning

description: Contains the raw data for the real-world networks used in the experiments (Euroroad and Scigrid).
DOI: 10.6084/m9.figshare.16843170
title: Real-World Network Data from Goal-directed graph construction using reinforcement learning

description: Contains the raw data for the real-world networks used in the experiments (Euroroad and Scigrid).
DOI: 10.6084/m9.figshare.16843164.v1
title: Source Code from Goal-directed graph construction using reinforcement learning

description: Contains all source code used to obtain the results reported in the manuscript.
DOI: 10.25451/flinders.16545597
title: Datasets accompanying thesis 'Gimme Shelter: Archaeology and the Social History of Structural Defence in Adelaide 1941-1943' by Martin Wimmer.

description: This dataset contains data relating to Appendices 4, 5, 6 & 7 of the doctoral thesis of Martin Wimmer 'Gimme Shelter: Archaeology and the Social History of Structural Defence in Adelaide 1941-1943' conferred in 2014 by Flinders University of South Australia.<br><br><br>Appendix 4 contains a Shelter Database (excel spreadsheet). This database relates to 547 shelters that were recorded across the six distinct types of structural defence which had been identified and characterised in Adelaide. An additional 39 were recorded in country areas. These types were classified by form, differing levels of sophistication and the quality of protection provided by each.<br><br><br>Appendix 5 contains Oral History Transcripts (pdf) from: Norm Chapman (14 July 2010, Peterborough, SA); Milton (Jack) Felstead (2 April 2008, Malvern, SA); Evan Holt (26 September 2007, Repat Hospital, SA); Jan Leaver (15 August 2008, Stirling, SA); Robert Morrell (21 August 2007, Fulham, SA); Ron Praite (8 August 2007, Unley Museum, SA); Margaret & Ian Stafford (22 September 2007, Repat. Hospital, SA).<br><br><br>Appendix 6 contains Additional Shelter Data. Collection of images and floor plans from 20 sites including: Chapman Type V, Freeman Type II (includes home movie), Geophysics (Soutar Park, Wallkerville Boys School), Glenelg Sub-Control Stn, Glover Playground pipes, Griff Type V (Millswood), Harley Type V, Jackson Type V, Kilburn Type IV rainwater tanks (Garland Avenue), Laffer Type II, Lamberton Type V, Marshmallow Park Pipes, Mitcham Primary Type IV, Norwood Oval Type V, Pierce Type V, Prospect Sub-Control Station, Therbarton Sub-Control Stn, Trowse Type III, Unley Oxford Tce Type V, Willis Type V (Beverley Shelter).<br><br><br>Appendix 7 is a pdf containing information on additional sources.<br><br>Date coverage: 1941 - 1943<br>Time period: WWII, World War II<br>Location: Adelaide, South Australia, Australia
DOI: 10.25451/flinders.16545597.v1
title: Datasets accompanying thesis 'Gimme Shelter: Archaeology and the Social History of Structural Defence in Adelaide 1941-1943' by Martin Wimmer.

description: This dataset contains data relating to Appendices 4, 5, 6 & 7 of the doctoral thesis of Martin Wimmer 'Gimme Shelter: Archaeology and the Social History of Structural Defence in Adelaide 1941-1943' conferred in 2014 by Flinders University of South Australia.<br><br><br>Appendix 4 contains a Shelter Database (excel spreadsheet). This database relates to 547 shelters that were recorded across the six distinct types of structural defence which had been identified and characterised in Adelaide. An additional 39 were recorded in country areas. These types were classified by form, differing levels of sophistication and the quality of protection provided by each.<br><br><br>Appendix 5 contains Oral History Transcripts (pdf) from: Norm Chapman (14 July 2010, Peterborough, SA); Milton (Jack) Felstead (2 April 2008, Malvern, SA); Evan Holt (26 September 2007, Repat Hospital, SA); Jan Leaver (15 August 2008, Stirling, SA); Robert Morrell (21 August 2007, Fulham, SA); Ron Praite (8 August 2007, Unley Museum, SA); Margaret & Ian Stafford (22 September 2007, Repat. Hospital, SA).<br><br><br>Appendix 6 contains Additional Shelter Data. Collection of images and floor plans from 20 sites including: Chapman Type V, Freeman Type II (includes home movie), Geophysics (Soutar Park, Wallkerville Boys School), Glenelg Sub-Control Stn, Glover Playground pipes, Griff Type V (Millswood), Harley Type V, Jackson Type V, Kilburn Type IV rainwater tanks (Garland Avenue), Laffer Type II, Lamberton Type V, Marshmallow Park Pipes, Mitcham Primary Type IV, Norwood Oval Type V, Pierce Type V, Prospect Sub-Control Station, Therbarton Sub-Control Stn, Trowse Type III, Unley Oxford Tce Type V, Willis Type V (Beverley Shelter).<br><br><br>Appendix 7 is a pdf containing information on additional sources.<br><br>Date coverage: 1941 - 1943<br>Time period: WWII, World War II<br>Location: Adelaide, South Australia, Australia
DOI: 10.5517/ccdc.csd.cc28kz72
title: CCDC 2102644: Experimental Crystal Structure Determination

description: Related Article: Weichuan Zhang, Maochun Hong, Junhua Luo|2021|J.Am.Chem.Soc.|143|16758|doi:10.1021/jacs.1c08281
DOI: 10.5517/ccdc.csd.cc28kz83
title: CCDC 2102645: Experimental Crystal Structure Determination

description: Related Article: Weichuan Zhang, Maochun Hong, Junhua Luo|2021|J.Am.Chem.Soc.|143|16758|doi:10.1021/jacs.1c08281
DOI: 10.5517/ccdc.csd.cc28lffr
title: CCDC 2103084: Experimental Crystal Structure Determination

description: Related Article: Emma N. Cook, Diane A. Dickie, Charles W. Machan|2021|J.Am.Chem.Soc.|143|16411|doi:10.1021/jacs.1c04572
DOI: 10.5517/ccdc.csd.cc26xqwr
title: CCDC 2053405: Experimental Crystal Structure Determination

description: Related Article: Buddhadeb Chakraborty, Sumit Sahoo, Raja Narayansamy, Dandamudi Usharani, Harapriya Rath|2021|Dalton Trans.|50|14421|doi:10.1039/D1DT02385C
DOI: 10.6084/m9.figshare.15059562
title: The amyloid proteome: a systematic review and proposal of a protein classification system

description: Amyloidosis is a disease caused by pathological fibril aggregation and deposition of proteins in different tissues and organs. Thirty-six fibril-forming proteins have been identified. So far, proteomic evaluation of amyloid focused on the detection and characterization of fibril proteins mainly for diagnostic purposes or to find novel fibril-forming proteins. However, amyloid deposits are a complex mixture of constituents that show organ-, tissue-, and amyloid-type specific patterns, that is the amyloid proteome. We carried out a comprehensive literature review on publications investigating amyloid via liquid chromatography coupled to tandem mass spectrometry, including but not limited to sample preparation by laser microdissection. Our review confirms the complexity and dynamics of the amyloid proteome, which can be divided into four functional categories: amyloid proteome-category 1 (APC1) includes exclusively fibrillary proteins found in the patient; APC2 includes potential fibril-forming proteins found in other types of amyloid; and APC3 and APC4 summarizes non-fibril proteins–some being amyloid signature proteins. Our categorization may help to systemically explore the nature and role of the amyloid proteome in the manifestation, progression, and clearance of disease. Further exploration of the amyloid proteome may form the basis for the development of novel diagnostic tools, thereby enabling the development of novel therapeutic targets.
DOI: 10.6084/m9.figshare.15059562.v2
title: The amyloid proteome: a systematic review and proposal of a protein classification system

description: Amyloidosis is a disease caused by pathological fibril aggregation and deposition of proteins in different tissues and organs. Thirty-six fibril-forming proteins have been identified. So far, proteomic evaluation of amyloid focused on the detection and characterization of fibril proteins mainly for diagnostic purposes or to find novel fibril-forming proteins. However, amyloid deposits are a complex mixture of constituents that show organ-, tissue-, and amyloid-type specific patterns, that is the amyloid proteome. We carried out a comprehensive literature review on publications investigating amyloid via liquid chromatography coupled to tandem mass spectrometry, including but not limited to sample preparation by laser microdissection. Our review confirms the complexity and dynamics of the amyloid proteome, which can be divided into four functional categories: amyloid proteome-category 1 (APC1) includes exclusively fibrillary proteins found in the patient; APC2 includes potential fibril-forming proteins found in other types of amyloid; and APC3 and APC4 summarizes non-fibril proteins–some being amyloid signature proteins. Our categorization may help to systemically explore the nature and role of the amyloid proteome in the manifestation, progression, and clearance of disease. Further exploration of the amyloid proteome may form the basis for the development of novel diagnostic tools, thereby enabling the development of novel therapeutic targets.
DOI: 10.6084/m9.figshare.15059562.v1
title: The amyloid proteome: a systematic review and proposal of a protein classification system

description: Amyloidosis is a disease caused by pathological fibril aggregation and deposition of proteins in different tissues and organs. Thirty-six fibril-forming proteins have been identified. So far, proteomic evaluation of amyloid focused on the detection and characterization of fibril proteins mainly for diagnostic purposes or to find novel fibril-forming proteins. However, amyloid deposits are a complex mixture of constituents that show organ-, tissue-, and amyloid-type specific patterns, that is the amyloid proteome. We carried out a comprehensive literature review on publications investigating amyloid via liquid chromatography coupled to tandem mass spectrometry, including but not limited to sample preparation by laser microdissection. Our review confirms the complexity and dynamics of the amyloid proteome, which can be divided into four functional categories: amyloid proteome-category 1 (APC1) includes exclusively fibrillary proteins found in the patient; APC2 includes potential fibril-forming proteins found in other types of amyloid; and APC3 and APC4 summarizes non-fibril proteins–some being amyloid signature proteins. Our categorization may help to systemically explore the nature and role of the amyloid proteome in the manifestation, progression, and clearance of disease. Further exploration of the amyloid proteome may form the basis for the development of novel diagnostic tools, thereby enabling the development of novel therapeutic targets.
DOI: 10.6084/m9.figshare.16821439
title: Genotyping data and population location for Quercus aliena and Quercus dentata

description: "Population location.xlsx" is the geographical location of the Quercus aliena and Quercus dentata. "SSR_ALL.txt" is the genotyping data for all 778 samples scored using Genemarker v. 2.2, then normalzed the score by FlexiBinv2 in TXT format.
DOI: 10.6084/m9.figshare.16821439.v4
title: Genotyping data and population location for Quercus aliena and Quercus dentata

description: "Population location.xlsx" is the geographical location of the Quercus aliena and Quercus dentata. "SSR_ALL.txt" is the genotyping data for all 778 samples scored using Genemarker v. 2.2, then normalzed the score by FlexiBinv2 in TXT format.
DOI: 10.6084/m9.figshare.14046344
title: Dataset 2.txt

description: AFLP binary matrix in fasta format
DOI: 10.6084/m9.figshare.14046344.v1
title: Dataset 2.txt

description: AFLP binary matrix in fasta format
DOI: 10.6084/m9.figshare.14046323
title: Dataset 1.txt

description: AFLP binary matrix in fasta format
DOI: 10.6084/m9.figshare.14046323.v1
title: Dataset 1.txt

description: AFLP binary matrix in fasta format
DOI: 10.25721/27ks-m860
title: Cinquième figure de quadrille : finale (biguine)
DOI: 10.25721/jy9f-cj08
title: La Pastourelle
DOI: 10.25957/5c871efe36f70
title: Abiotic and biotic drivers of fatty acid tracers in ecology: a global analysis of chondrichthyan profiles

description: This dataset includes the mean fatty acid profiles for 6 shark, ray and chimaeras.
DOI: 10.25375/uct.15089883
title: Impact of cryoprotectants during freeze drying on Lactobacillus plantarum viability and their role in enhancing probiotic storage stability

description: This research investigated the prebiotic potential of various cryoprotectants and the protective effect of 10% (m/v) of skimmed milk, inulin, maltodextrin and sucrose as cryoprotectants on <i>Lactobacillus plantarum </i>during freeze drying<i>.</i> Improved survival of L. plantarum during freeze drying was observed with all cryoprotectants. Skimmed milk demonstrated the highest protection after freeze drying, with a survival rate of 91% and viable cell counts of 9.1 ×10^8 (CFU/ml) from an initial cell count prior to drying of 1.0×10^9 (CFU/ml). Inulin demonstrated high protective efficiency, with 85% viability maintained during freeze drying which resulted in final cell counts of 1.1×10^9 (CFU/ml) from an initial cell count of 1.3 ×10^9 (CFU/ml).<br><br>The data set contains:<br>1. OD and pH reading measured during the growth of <i>Lactobacillus plantarum in media, each supplemented with various concentrations of glucose, inulin, maltodextrin and sucrose respectively</i><br><i>2. CFU counts and respective viabilities of L. plantarum after freeze drying and during storage periods, using various cryoprotectants.</i><i>3. O</i>D and pH reading measured during the re- growth of <i>Lactobacillus plantarum in media before freeze drying, after freeze during and over storage </i><i>4. SEM and TEM images of freeze dried L.plantarum in various cryoprotectants</i>