cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.talxaz
title: Occurrence Download

description: A dataset containing 25216 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DecimalLatitude is greater than 31.6354383071941",
 "DecimalLatitude is less than 32.3809440923395",
 "DecimalLongitude is greater than -113.297620559315",
 "DecimalLongitude is less than -112.396355129485"
 ]
}

 The dataset includes 25216 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008074-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ahzx68
title: Occurrence Download

description: A dataset containing 264 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phoronis australis"
 ]
}

 The dataset includes 264 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004508-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/e4aj17
title: Replication Data for: Productivity, Place, and Plants

description: Replication Package for Productivity, Place, and Plants
DOI: 10.6084/m9.figshare.c.3605501_d6
title: MOESM2 of Defining rules of CD8+ T cell expansion against pre-erythrocytic Plasmodium antigens in sporozoite-immunized mice

description: Additional file 2. Title: Proteins subjected to bioinformatics analysis and listing of all syntenic orthologue pairs. This file provides multiple worksheets listing species-by-species protein identifiers (PlasmoDB gene ID) as well as worksheets listing the syntenic orthologue pairs for P. yoelii 17XNL/P. berghei ANKA and P. falciparum 3D7/P. vivax Sal1. These pairings were used as input pairings for Additional files 3 and 4.
DOI: 10.6084/m9.figshare.c.3605534_d1
title: Additional file 1: Table S1. of Identification of TTAGGG-binding proteins in Neurospora crassa, a fungus with vertebrate-like telomere repeats

description: MaxQuant output table containing protein identification and LFQ quantification data for the neurospora telomere pull-downs. Table S2. Sequence of the cloned coding sequences from N. crassa by cDNA synthesis of its mRNA. Table S3. Primers used in this study. (XLSX 126 kb)
DOI: 10.6084/m9.figshare.c.3605525_d4
title: Additional file 8: of Improved DNase-seq protocol facilitates high resolution mapping of DNase I hypersensitive sites in roots in Arabidopsis thaliana

description: Detailed list of DNase I SIM changes. Side-by-side spreadsheet of differences at each step found between DNase I SIM and the DNase-seq protocols in [6] and [10].
DOI: 10.6084/m9.figshare.c.3605570_d2
title: Additional file 2: of Supervising international students in clinical placements: perceptions of experiences and factors influencing competency development

description: Thematic analysis dataset. (XLSX 130Â kb)
DOI: 10.6084/m9.figshare.c.3605567_d2
title: MOESM2 of Collapse of an iconic conifer: long-term changes in the demography of Widdringtonia cedarbergensis using repeat photography

description: Additional file 2: Table S2. Source, spatial and temporal resolution, and unit of measurement of environmental variables.
DOI: 10.15468/dl.4a2t4u
title: Occurrence Download

description: A dataset containing 558 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Viola dissecta Ledeb."
 ]
}

 The dataset includes 558 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032921-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fa54w7
title: Occurrence Download

description: A dataset containing 12626 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Europe, Africa)",
 "TaxonKey is Callitriche brutia Petagna"
 ]
}

 The dataset includes 12626 records from 269 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032920-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3605663_d3
title: Additional file 3: Table S3. of Genetic diversity of Plasmodium falciparum isolates from uncomplicated malaria cases in Ghana over a decade

description: Allele sizes and number of genotypes per infection for isolates collected in 2003â  2004. (XLS 87Â kb)
DOI: 10.15468/dl.73ss5t
title: Occurrence Download

description: A dataset containing 596 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stichopodidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 596 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032922-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3605702_d3
title: MOESM1 of Derivation of induced pluripotent stem cells from orangutan skin fibroblasts

description: Additional file 1. Log-transformed gene expression scores from orangutan fibroblasts and iPSCs. A complete list of log-transformed gene expression scores from orangutan fibroblasts and iPSCs is provided along with their percentile rank within a given samples. Differentially expressed genes (1.5-fold change FDR&lt;0.05) are also provided.
DOI: 10.6084/m9.figshare.c.3605711_d2
title: Additional file 3: Table S3. of The rumen microbial metagenome associated with high methane production in cattle

description: KEGG dataset in order of average gene abundance. (XLSX 1400 kb)
DOI: 10.6084/m9.figshare.c.3605717_d1
title: Additional file 1: Table S1. of A pleiotropic interaction between vision loss and hypermelanism in Astyanax mexicanus cave x surface hybrids

description: Genotypes of hybrid F2 individuals demonstrating dark pigmentation and small eyes (data reanalyzed from Protas et al. 2007). (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3605759_d11
title: Additional file 8: Table S6. of Post-weaning blood transcriptomic differences between Yorkshire pigs divergently selected for residual feed intake

description: Summary of IPAD-based pathway and disease enrichment analyses. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.c.3605759_d12
title: Additional file 1: Table S1. of Post-weaning blood transcriptomic differences between Yorkshire pigs divergently selected for residual feed intake

description: Meta data for RNA-seq and RT-qPCR assays. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3605759_d13
title: Additional file 12: Table S10. of Post-weaning blood transcriptomic differences between Yorkshire pigs divergently selected for residual feed intake

description: GO-BP terms enriched in the WGCNA modules. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3605795_d1
title: Additional file 1: Table S1. of Effects of dietary fat subtypes on glucose homeostasis during pregnancy in rats

description: Fatty acid composition in skeletal muscle and liver. This dataset included individual fatty acid profile in red quadriceps, soleus and liver of each animal. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3605810_d1
title: MOESM2 of Plasma preparation to measure FDA-approved protein markers by selected reaction monitoring

description: Additional file 2: Table S1. The summary of all obtained SRM spectra with q-values â ¤ 0.01.
DOI: 10.6084/m9.figshare.c.3605831_d1
title: Additional file 1: of High-risk HPV is not associated with epithelial ovarian cancer in a Caucasian population

description: Dataset containing information on individual samples and PCR reactions. (XLSM 26Â kb)
DOI: 10.6084/m9.figshare.c.3605834_d1
title: Additional file 2: of Genome wide characterization of simple sequence repeats in watermelon genome and their application in comparative mapping and genetic diversity analysis

description: Table S1. Watermelon Plant introduction accessions (PIs) used in the present study. Table S2. Genome wide SSR primers developed in the watermelon genome. Table S3. List of cross-species SSR markers between watermelon and cucumber identified by in silico PCR. Table S4. List of cross-species SSR markers between watermelon and melon identified by in silico PCR. Table S5. List of conserved SSR markers among watermelon, melon and cucumber genomes. Table S6. Syntenic blocks shared for cucumber, melon and watermelon genomes. Table S7. Information of fosmid clones used in fluorescence in situ hybridization (FISH). Table S8. List of 192 SSR primers used for polymorphism screening in watermelon. Table S9. Statistic of observed (Na) and effective number of alleles (Ne), observed (Ho) and expected heterozygosity (He), polymorphic information content (PIC) and Shannonâ  s information index (I) for 32 SSR markers. (XLSX 3673Â kb)
DOI: 10.6084/m9.figshare.c.3605978_d2
title: Additional file 5: Figure S2. of Transcription analysis of neonicotinoid resistance in Mediterranean (MED) populations of B. tabaci reveal novel cytochrome P450s, but no nAChR mutations associated with the phenotype

description: Amino acid alignment of nAChR subunits from B. tabaci transcriptome with available protein sequences from 7 insect species. List of species in the alignment: D. Melanogaster (Dmel), A. mellifera (Amel), T. castaneum (Tcas), A. gambiae (Agamb), B. mori (Bmori), A. pisum (Apisum), B. tabaci (Btab). (Examination of this file requires the BioEdit program ( http://www.mbio.ncsu.edu/bioedit/bioedit.html )). (ALI 135 kb)
DOI: 10.6084/m9.figshare.c.3605978_d4
title: Additional file 10: Table S5. of Transcription analysis of neonicotinoid resistance in Mediterranean (MED) populations of B. tabaci reveal novel cytochrome P450s, but no nAChR mutations associated with the phenotype

description: GO enrichment analysis of all strains vs full transcriptome. The file consists separate sheets of up and down regulated GO enrichment terms of each resistant strain (GR4-AP, GR4-AS, GR9-IS) vs susceptible strain S-GR6 and of GR4-AS vs GR4-AP against full transcriptome. (XLS 621 kb)
DOI: 10.5281/zenodo.14437388
title: Very important pharmacogene variants in the Pumi population

description:  Eighty-two genetic variants in 43 genes were genotyped in 200 unrelated Pumi individuals using the Agena MassARRAY Assay.
DOI: 10.5281/zenodo.14437389
title: Very important pharmacogene variants in the Pumi population

description:  Eighty-two genetic variants in 43 genes were genotyped in 200 unrelated Pumi individuals using the Agena MassARRAY Assay.
DOI: 10.6084/m9.figshare.c.3605990_d1
title: Additional file 5: Table S4. of Novel equine tissue miRNAs and breed-related miRNA expressed in serum

description: Differentially expressed miRNAs in pony serum compare to Warmbloods. An Excel table with log 2 fold changes and false discovery rates of genes significantly differentially expressed in serum derived from 4 Shetland and one Welsh pony in comparison to 44 Warmbloods. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3605996_d1
title: Additional file 3: of The neurotranscriptome of the Aedes aegypti mosquito

description: Is an annotation table for all genes in AaegL.RU, including OrthoDB orthologue groups shared with D. melanogaster. (XLSX 841 kb)
DOI: 10.6084/m9.figshare.c.3605990_d2
title: Additional file 3: Table S2. of Novel equine tissue miRNAs and breed-related miRNA expressed in serum

description: Known and novel miRNAs expression values. An Excel table with normalized count per million values (cpm) for each of the known and novel miRNAs expressed at &gt; 1 cpm in 90 % of samples. (XLSX 519 kb)
DOI: 10.6084/m9.figshare.c.3605996_d2
title: Additional file 8: of The neurotranscriptome of the Aedes aegypti mosquito

description: Is a spreadsheet describing the DESeq2 differential expression statistics of sexually dimorphic transcripts for all applicable tissues. (XLSX 1366 kb)
DOI: 10.6084/m9.figshare.c.3605993_d3
title: Additional file 5: Table S12. of A machine learning strategy for predicting localization of post-translational modification sites in protein-protein interacting regions

description: Lists of sequences in the validation datasets. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3605996_d3
title: Additional file 6: of The neurotranscriptome of the Aedes aegypti mosquito

description: Is a table of transcript abundance (in units of TPM) for all non-blood-fed and male tissues, AaegL3.3 annotation. (XLSX 21243 kb)
DOI: 10.6084/m9.figshare.c.3605990_d4
title: Additional file 1: Table S1. of Novel equine tissue miRNAs and breed-related miRNA expressed in serum

description: RNA sample description. An Excel table with details on RNA samples used for library preparation. For each library horse ID, tissue, breed, age, sex, and absorbance at 414Â nm (only serum samples) are given. (XLSX 17 kb)
DOI: 10.15468/dl.qkjxf5
title: Occurrence Download

description: A dataset containing 1833 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Callionymidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1833 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032923-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3606038_d5
title: Additional file 2 of Molecular characterization of Gleason patterns 3 and 4 prostate cancer using reverse Warburg effect-associated genes

description: Gene/accession numbers. Table S2. RWE code-set accession numbers. (XLSX 46.8 kb)
DOI: 10.6084/m9.figshare.c.3606032_d9
title: Additional file 4: Table S3. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

description: Enriched GO terms in low CCC genes. GO terms containing similar genes are colored similarly. Additional tabs contain a list of GO annotated low CCC genes belonging to the GO terms mentioned in Fig.Â 4 and a list of all the corresponding GO terms associated with each gene. (XLSX 575Â kb)
DOI: 10.6084/m9.figshare.c.3606032_d10
title: Additional file 14: Table S10. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

description: A list of the primers that were used for qRT-PCR experiments. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3606044_d4
title: MOESM3 of Penicillin binding protein 3 of Staphylococcus aureus NCTC 8325-4 binds and activates human plasminogen

description: Additional file 3. Primary data of Plg binding by recombinant proteins (Fig. 4).
DOI: 10.6084/m9.figshare.c.3606032_d11
title: Additional file 1: Table S1. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

description: The differentially expressed (DE) genes of the regeneration screen. The list contains the gene id, followed by Uniprot or Blast2GO annotation and FDR adjusted p-value of the time effect. This is followed by the average reads for each time point, DESeq normalized read count per each duplicate time point and raw read count per each duplicate time point. The annotation (â  â  ) appears when Blast2GO did not retrieve any blast hit in the RefSeq protein database. (XLSX 2933Â kb)
DOI: 10.6084/m9.figshare.c.3606050_d3
title: Additional file 6: of The intron-enriched HERV-K(HML-10) family suppresses apoptosis, an indicator of malignant transformation

description: Sequences of ASOs. Asterisks denote phosphorothioate bonds. (XLS 39 kb)
DOI: 10.6084/m9.figshare.c.3606032_d12
title: Additional file 12: Table S8. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

description: Time course graphs of the major DE tubulin and cilia associated genes. (XLSX 40Â kb)
DOI: 10.6084/m9.figshare.c.3606032_d13
title: Additional file 8: Table S6. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

description: Wnt family genes clusters. A list of the cluster groups of the Wnt family genes and a list of the genes in each cluster shown in Fig.Â 5a. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3606050_d4
title: Additional file 4: of The intron-enriched HERV-K(HML-10) family suppresses apoptosis, an indicator of malignant transformation

description: Protein fasta sequences of Pol proteins of different endogenous and exogenous betaretroviruses. (TXT 11 kb)
DOI: 10.6084/m9.figshare.c.3606032_d14
title: Additional file 9: Figure S4. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

description: Time course graphs of the major DE Wnt factors and Wnt pathway members. (XLSX 81Â kb)
DOI: 10.6084/m9.figshare.c.3606050_d5
title: Additional file 5: of The intron-enriched HERV-K(HML-10) family suppresses apoptosis, an indicator of malignant transformation

description: Primer sequences. (XLS 42 kb)
DOI: 10.6084/m9.figshare.c.3606128_d10
title: Additional file 14: of CellMapper: rapid and accurate inference of gene expression in difficult-to-isolate cell types

description: Table of genes within GWAS loci predicted for expression in relevant cell types, focusing on loci associated with red blood cell phenotypes, platelet phenotypes, or inflammatory bowel disease (IBD). (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3606128_d11
title: Additional file 7: of CellMapper: rapid and accurate inference of gene expression in difficult-to-isolate cell types

description: CellMapper predictions for each of the 30 cell types. (XLSX 2677 kb)
DOI: 10.6084/m9.figshare.c.3606173_d2
title: Additional file 3: of Topological analysis of metabolic networks integrating co-segregating transcriptomes and metabolomes in type 2 diabetic rat congenic series

description: Supplementary Tables 4-6. (XLSX 28452 kb)
DOI: 10.6084/m9.figshare.c.3606278_d1
title: Additional file 1: Table S1. of Development of a gene synthesis platform for the efficient large scale production of small genes encoding animal toxins

description: Sequences properties of genes A, B and C used to optimize the PCR conditions. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3606278_d2
title: Additional file 5: Table S5. of Development of a gene synthesis platform for the efficient large scale production of small genes encoding animal toxins

description: Sequence properties of 96 genes synthesised using the HTP gene synthesis platform. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3606278_d3
title: Additional file 2: Table S2. of Development of a gene synthesis platform for the efficient large scale production of small genes encoding animal toxins

description: Primer sequences used to assembly of gene A using different approaches for gene synthesis. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3606278_d4
title: Additional file 4: Table S4. of Development of a gene synthesis platform for the efficient large scale production of small genes encoding animal toxins

description: PCR programs used to optimize the PCR profile of a PCR-assembly reaction. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3606278_d5
title: Additional file 6: Table S6. of Development of a gene synthesis platform for the efficient large scale production of small genes encoding animal toxins

description: Mutation types identified in the genes produced. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3606278_d6
title: Additional file 3: Table S3. of Development of a gene synthesis platform for the efficient large scale production of small genes encoding animal toxins

description: Primer sequences used to assembly of genes B and C. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3606437_d1
title: Additional file 1: Table S1. of Integrating interdisciplinary methodologies for One Health: goat farm re-implicated as the probable source of an urban Q fever outbreak, the Netherlands, 2009

description: Attack rates and relative risks per potential source farm. Number of cases, number of total inhabitants, attack rates (AR) per 100,000 inhabitants, and relative risks (RR) per concentric 1Â km ring around each potential source farm A â   Q. (XLS 29Â kb)
DOI: 10.6084/m9.figshare.c.3606440_d1
title: MOESM2 of Gut microbiome alterations in patients with stage 4 hepatitis C

description: Additional file 2: Table S2. Number 16S reads assigned to different operational taxonomic units (OTUs).
DOI: 10.6084/m9.figshare.c.3606440_d3
title: MOESM1 of Gut microbiome alterations in patients with stage 4 hepatitis C

description: Additional file 1: Table S1. Information collected about patients and healthy volunteers from whom stool samples were collected.
DOI: 10.15468/dl.ctf245
title: Occurrence Download

description: A dataset containing 55254 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gobiidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 55254 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032925-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3606545_d2
title: MOESM1 of Production of para-aminobenzoic acid from different carbon-sources in engineered Saccharomyces cerevisiae

description: Additional file 1. Sequence analysis & discussion of ABZ1 & ABZ2. XLS-file containing sequence alignments & codon usage analysis of the different examined ABZ1 and ABZ2 genes.
DOI: 10.6084/m9.figshare.c.3606494_d16
title: Additional file 15: Table S8. of Functional characterisation of long intergenic non-coding RNAs through genetic interaction profiling in Saccharomyces cerevisiae

description: List of all analysed Gene Ontology Slim terms. (XLSX 10 kb)
DOI: 10.15468/dl.3p587w
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Coilia grayii Richardson, 1845",
 "Year 1900-2024"
 ]
}

 The dataset includes 29 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032926-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3606545_d3
title: MOESM2 of Production of para-aminobenzoic acid from different carbon-sources in engineered Saccharomyces cerevisiae

description: Additional file 2. EMA networks & EFM plots for pABA production from different carbon-sources. XLS-file containing stoichiometric models for elementary mode analysis & result figures of product vs. biomass yield plots.
DOI: 10.6084/m9.figshare.c.3606551_d1
title: Additional file 4: Table S4. of Small RNA profiles in soybean primary root tips under water deficit

description: The enriched GO terms of predicted targets for ten deregulated miRNAs in water-stress conditions. (XLSX 149 kb)
DOI: 10.6084/m9.figshare.c.3606551_d2
title: Additional file 6: Table S6. of Small RNA profiles in soybean primary root tips under water deficit

description: The normalized abundances of novel miRNAs. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3606554_d2
title: MOESM2 of Conserved expression of vertebrate microvillar gene homologs in choanocytes of freshwater sponges

description: Additional file 2: Supplemental Table 1. Expression data for microvillar genes homologs in both Ephydatia species. Summary of gene expression results for microvillar genes in Ephydatia muelleri and Ephydatia fluviatilis [data from 49].