cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/009ce09d2f20a639e9e20de2d2074660
title: Water, Soil, Floc, Plant Total Phosphorus, Total Carbon, and BD data (FCE) from Everglades Protection Area (EPA) from 2004 to 2016

description: These data are a compillation of data from multiple sources including South Florida Water Management District (SFWMD) DBhydro web database, United States Environment Protection Agency Regional, Environmental Monitoring and Assessment (REMAP), Everglades Soil Mapping (ESM), and Florida Coastal Everglades Long Term Ecological Research (FCE-LTER). The matrix of these data were compiled for soil, surface water, floc, and plants where the nutrients are counted for total phosphorus, total carbon, and bulk density. When downloading the data from DBhydro, only regularly collected samples (SAMP) were included these data. As per DBhydro metadata, the regular samples were collected monthly by grab method throughout the year from 2004 to 2016 for SFWMD monitoring stations across the EPA. All flagged and field quality controlled values were excluded to avoid the duplication of data. In order to maintain the quality assurance/ quality control (QA/QC) the method detection limit for water TP was fixed at 2 µg/L by the SFWMD. This data set were used to assess the decadal trend of TP concentration in surface water and soil in EPA. Available data from 2004 to 2014 was collected for soils and from 2004 to 2016 for water to understand a decade of trends. Both Geographic Information System (GIS) and statistical data analysis were applied to determine changes in water quality and soil chemistry.  These data are the basis for Shishir Sarker's Master's thesis.
DOI: 10.6078/m78050pq
title: Images Documenting Ethnoarchaeology in the Environs of Tell Halif, Israel
DOI: 10.17632/bmbh82z98y.1
title: Data for: Effects of stickwater hydrolysates on growth performance of yellow catfish (Pelteobagrus fulvidraco)

description: there are the metadata of our manuscript
DOI: 10.17632/nwbghyz872.1
title: Data for: Synthesis of copper nanoclusters stabilized by 2-amino-5-mercapto-1, 3, 4 -thiadiazole and acetate simultaneously and as a sensitive sensor for detecting trace water in organic solvents

description: Copper nanoclusters as a sensor for detecting the water in organic solvents
DOI: 10.17632/zp6htkt78s.1
title: Data for: Ring Cracks at the Surface of a Half-Space

description: This file contains the influence functions (kernels) for radial and axial circular dislocations in a half-space implemented in MATLAB. Since the radial dislocation is not of Volterra type, the kernels are implemented for four different path cuts.
DOI: 10.17632/zp6htkt78s.2
title: Data for: Ring Cracks at the Surface of a Half-Space

description: This file contains the influence functions (kernels) for radial and axial circular dislocations in a half-space implemented in MATLAB. Since the radial dislocation is not of Volterra type, the kernels are implemented for four different path cuts.
DOI: 10.5281/zenodo.1241103
title: Supporting Data For "Hyperfine-Phonon Spin Relaxation In A Single-Electron Gaas Quantum Dot"

description: Supporting data for<br>
"Hyperfine-phonon spin relaxation in a single-electron GaAs quantum dot"<br>
Leon C. Camenzind, Liuqi Yu, Peter Stano, Jeramy D. Zimmerman, Arthur C. Gossard, Daniel Loss & Dominik M. Zumbühl

<em>Nature Communications <strong>Volume 9</strong></em>, Article number: 3454 (2018)
DOI: 10.5281/zenodo.1241104
title: Supporting Data For "Hyperfine-Phonon Spin Relaxation In A Single-Electron Gaas Quantum Dot"

description: Supporting data for<br>
"Hyperfine-phonon spin relaxation in a single-electron GaAs quantum dot"<br>
Leon C. Camenzind, Liuqi Yu, Peter Stano, Jeramy D. Zimmerman, Arthur C. Gossard, Daniel Loss & Dominik M. Zumbühl

<em>Nature Communications <strong>Volume 9</strong></em>, Article number: 3454 (2018)
DOI: 10.17632/436m8s3bpm.1
title: Mesocosm electromotive potential and pore network data
DOI: 10.17632/6wtd46ry6s.1
title: Data for: Severity and duration of menopausal symptoms after risk-reducing salpingo-oophorectomy
DOI: 10.17632/cr7kdh5wjg.1
title: Data for: Sclerosing Angiomatoid Nodular Transformation of the Spleen in a Four-Year-Old with Anemia

description: Ultrasound and CT images of SANT of the spleen along with histopathological imaging characteristic
DOI: 10.17632/t2y8s77ghp.1
title: Data for: Rapid precipitation changes in the tropical West Pacific linked to North Atlantic climate forcing during the last deglaciation

description: Supplementary data associated with the revised manuscripts.
DOI: 10.17632/y4hw4rg7zp.1
title: Data for: Credit Crunches, Individual Heterogeneity and the Labor Wedge
DOI: 10.18112/openneuro.ds001302.v1.0.1
title: Inverse Base Rate
DOI: 10.25919/5b8861aa54b8b
title: Source data for the Prober et al manuscript: Shifting the conservation paradigm - a synthesis of options for renovating nature under climate change

description: This data collection is the source data for the manuscript "Shifting the conservation paradigm - a synthesis of options for renovating nature under climate change" by Suzanne M. Prober, Veronica A. J. Doerr, Linda M. Broadhurst, Kristen J. Williams, Fiona Dickson and published in the peer-reviewed journal "Ecological Monographs" in 2018.  The data are provided as an excel spreadsheet with three sheets. The results are provided in "SourceData_Prober_etal_EcolMono" including the cited references (peer-reviewed journal articles). The full citation of each reference is given in Appendix S1 of the manuscript (and on tab 3).
DOI: 10.5281/zenodo.1404658
title: Pan-Cancer Inference Of Intra-Tumor Heterogeneity Reveals Associations With Different Forms Of Genomic Instability

description: "Pan-cancer inference of intra-tumor heterogeneity reveals associations with different forms of genomic instability", F. Raynaud, M. Mina, D. Tavernari and G. Ciriello

These files are necessary to generate the supplementary table containing:

#Sample_name #Cancer_type #Cancer_subtype #Mean_reads_per_mutations #Number_of_mutations #Number_of_altered_segments #Number_of_clones #TreeScore #Number_of_mutations_first_clone #Number_of_mutations_other_clones

REQUIREMENTS

Phylogenies generated by PhyloWGS (PhyloWGS: Reconstructing subclonal composition and evolution from whole-genome sequencing of tumors](http://genomebiology.com/2015/16/1/35), Deshwar et al.)

Output files from PhyloWGS for each sample:


	
	top_k_trees which contains the best phylogenies (50 by default) with the label of each clone, the population frequency of each clone, the number of children of each clone, number of mutations in the clone, the labels of the mutations
	
	
	top_k_trees1, top_k_trees2, ... , top_k_treesN output file for the best k trees (50 by default)
	


FILES

*Molecular data for the tumor types: CESC, UCEC, UVM, THCA, KICH, BRCA, SKCM, ACC, CRC, STAD, BLCA, LUAD, KIRP, PRAD, LIHC; has been collected in July 2015 *Molecular data for the tumor types: SARC, PAAD, MESO, LGG, GBM, DLBC, UCS, THYM, TGCT, PCPG, OV, LUSC, LAML, KIRC, HNSC, ESCA, CHOL; has been collected in 2018

from the FireHose (https://gdac.broadinstitute.org/) and cBioPortal (Cerami et al., 2012) (http://www.cbioportal.org/) data repositories for The Cancer Genome Atlas (TCGA). Only TCGA datasets publicly available at that time were used in our study.

-Mutation files (MAF format): combined_2015_2018_MAF.maf.bz2

-Copy number segmentation files: combined_seg_2015_2018.seg.bz2

-analyze_public.py: Python file to generate the Supplementary Table run: python2.7 analyze_public.py

- All input data and results from PhyloWGS: PhyloWGS_input_output.tar.bz2
DOI: 10.5287/bodleian:5rjwgd8nv
title: Objectives and key results in the classroom: a framework for practice development on goal-setting
DOI: 10.5287/bodleian:eynyvpq8n
title: Advanced_Materials_2018_RwDATA
DOI: 10.5517/ccdc.csd.cc1yvwqd
title: CCDC 1813305: Experimental Crystal Structure Determination

description: Related Article: Jeffrey Bruffaerts, David Pierrot, Ilan Marek|2018|Nature Chemistry|10|1164|doi:10.1038/s41557-018-0123-7
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/tnjxrz64fc.1
title: Data for: Prevalence of prediabetes and diabetes mellitus among adults residing in Cameroon: a systematic review and meta-analysis

description: Individual characteristics of all included studies
DOI: 10.5281/zenodo.1404657
title: Pan-Cancer Inference Of Intra-Tumor Heterogeneity Reveals Associations With Different Forms Of Genomic Instability

description: "Pan-cancer inference of intra-tumor heterogeneity reveals associations with different forms of genomic instability", F. Raynaud, M. Mina, D. Tavernari and G. Ciriello

These files are necessary to generate the supplementary table containing:

#Sample_name #Cancer_type #Cancer_subtype #Mean_reads_per_mutations #Number_of_mutations #Number_of_altered_segments #Number_of_clones #TreeScore #Number_of_mutations_first_clone #Number_of_mutations_other_clones

REQUIREMENTS

Phylogenies generated by PhyloWGS (PhyloWGS: Reconstructing subclonal composition and evolution from whole-genome sequencing of tumors](http://genomebiology.com/2015/16/1/35), Deshwar et al.)

Output files from PhyloWGS for each sample:


	
	top_k_trees which contains the best phylogenies (50 by default) with the label of each clone, the population frequency of each clone, the number of children of each clone, number of mutations in the clone, the labels of the mutations
	
	
	top_k_trees1, top_k_trees2, ... , top_k_treesN output file for the best k trees (50 by default)
	


FILES

*Molecular data for the tumor types: CESC, UCEC, UVM, THCA, KICH, BRCA, SKCM, ACC, CRC, STAD, BLCA, LUAD, KIRP, PRAD, LIHC; has been collected in July 2015 *Molecular data for the tumor types: SARC, PAAD, MESO, LGG, GBM, DLBC, UCS, THYM, TGCT, PCPG, OV, LUSC, LAML, KIRC, HNSC, ESCA, CHOL; has been collected in 2018

from the FireHose (https://gdac.broadinstitute.org/) and cBioPortal (Cerami et al., 2012) (http://www.cbioportal.org/) data repositories for The Cancer Genome Atlas (TCGA). Only TCGA datasets publicly available at that time were used in our study.

-Mutation files (MAF format): combined_2015_2018_MAF.maf.bz2

-Copy number segmentation files: combined_seg_2015_2018.seg.bz2

-analyze_public.py: Python file to generate the Supplementary Table run: python2.7 analyze_public.py

- All input data and results from PhyloWGS: PhyloWGS_input_output.tar.bz2
DOI: 10.5517/ccdc.csd.cc1q6h3j
title: CCDC 1585157: Experimental Crystal Structure Determination

description: Related Article: Dominik Lomjanský, Cyril Rajnák, Ján Titiš, Ján Moncoľ, Lukáš Smolko, Roman Boča|2018|Inorg.Chim.Acta|483|352|doi:10.1016/j.ica.2018.08.029
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1yvwym
title: CCDC 1813312: Experimental Crystal Structure Determination

description: Related Article: Jeffrey Bruffaerts, David Pierrot, Ilan Marek|2018|Nature Chemistry|10|1164|doi:10.1038/s41557-018-0123-7
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1yz6y2
title: CCDC 1816505: Experimental Crystal Structure Determination

description: Related Article: Qi-Pin Qin, Bi-Qun Zou, Ming-Xiong Tan, Shu-Long Wang, Yan-Cheng Liu, Hong Liang|2018|New J.Chem.|42|15479|doi:10.1039/C8NJ03005G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1yz6z3
title: CCDC 1816506: Experimental Crystal Structure Determination

description: Related Article: Qi-Pin Qin, Bi-Qun Zou, Ming-Xiong Tan, Shu-Long Wang, Yan-Cheng Liu, Hong Liang|2018|New J.Chem.|42|15479|doi:10.1039/C8NJ03005G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5287/bodleian:aopqad7d0
title: The magnetic structures of rare-earth quadruple perovskite manganites RMn7O12: Data archive
DOI: 10.5517/ccdc.csd.cc1zcbpc
title: CCDC 1828153: Experimental Crystal Structure Determination

description: Related Article: Richard C. Knighton, Vijyesh K. Vyas, Luke H. Mailey, Bhalchandra M. Bhanage, Martin Wills|2018|J.Organomet.Chem.|875|72|doi:10.1016/j.jorganchem.2018.08.020
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zcbqd
title: CCDC 1828154: Experimental Crystal Structure Determination

description: Related Article: Richard C. Knighton, Vijyesh K. Vyas, Luke H. Mailey, Bhalchandra M. Bhanage, Martin Wills|2018|J.Organomet.Chem.|875|72|doi:10.1016/j.jorganchem.2018.08.020
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zgg41
title: CCDC 1831143: Experimental Crystal Structure Determination

description: Related Article: Ruikai Wu, Yifan Wang, Randi Zhang, Cun-Yue Guo, Zygmunt Flisak, Yang Sun, Wen-Hua Sun|2018|Polymer|153|574|doi:10.1016/j.polymer.2018.08.056
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zh35r
title: CCDC 1831764: Experimental Crystal Structure Determination

description: Related Article: Binmiao Yang, Xuejie Zhai, Shubo Feng, Zhihui Shao|2018|Org.Chem.Front.|5|2794|doi:10.1039/C8QO00783G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/r9cczzrn7j.1
title: Data for: Effect of Insulation Melting and Dripping on Opposed Flame Spread over Laboratory Simulated Electrical Wires

description: Videos of flame spread over 8-mm and 9-mm thick research wires with copper (Cu) and stainless steel (SS) cores and low-density polyethylene (LDPE). The wire is positioned vertically and horizontally under various opposed flow velocity in the wind tunnel. The flame spread rate is measured from the video.
DOI: 10.5281/zenodo.1406586
title: Scrna-Subsets Processed Data Files

description: Processed data files for regenerating figures from upcoming manuscript.
DOI: 10.5517/ccdc.csd.cc14521f
title: CCDC 1047553: Experimental Crystal Structure Determination

description: Related Article: Abdul Malik P. Peedikakkal, Hong Sheng Quah, Stacey Chia, Almaz S. Jalilov, Abdul Rajjak Shaikh, Hasan Ali Al-Mohsin, Khushboo Yadava, Wei Ji, Jagadese J. Vittal|2018|Inorg.Chem.|57|11341|doi:10.1021/acs.inorgchem.8b00637
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc14522g
title: CCDC 1047554: Experimental Crystal Structure Determination

description: Related Article: Abdul Malik P. Peedikakkal, Hong Sheng Quah, Stacey Chia, Almaz S. Jalilov, Abdul Rajjak Shaikh, Hasan Ali Al-Mohsin, Khushboo Yadava, Wei Ji, Jagadese J. Vittal|2018|Inorg.Chem.|57|11341|doi:10.1021/acs.inorgchem.8b00637
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zm9vr
title: CCDC 1835815: Experimental Crystal Structure Determination

description: Related Article: Zhen-Zhen Shi, Sheng-Tao Fang, Feng-Ping Miao, Xiu-Li Yin, Nai-Yun Ji|2018|Bioorg.Chem.|81|319|doi:10.1016/j.bioorg.2018.08.027
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zmmfn
title: CCDC 1836112: Experimental Crystal Structure Determination

description: Related Article: Javier Cepeda, Manuel Pérez-Mendoza, Antonio J. Calahorro, Nicola Casati, José Manuel Seco, Marta Aragones-Anglada, Peyman Z. Moghadam, David Fairen-Jimenez, Antonio Rodríguez-Diéguez|2018|J.Mater.Chem.A|6|17409|doi:10.1039/C8TA04316G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zmmgp
title: CCDC 1836113: Experimental Crystal Structure Determination

description: Related Article: Javier Cepeda, Manuel Pérez-Mendoza, Antonio J. Calahorro, Nicola Casati, José Manuel Seco, Marta Aragones-Anglada, Peyman Z. Moghadam, David Fairen-Jimenez, Antonio Rodríguez-Diéguez|2018|J.Mater.Chem.A|6|17409|doi:10.1039/C8TA04316G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zmmhq
title: CCDC 1836114: Experimental Crystal Structure Determination

description: Related Article: Javier Cepeda, Manuel Pérez-Mendoza, Antonio J. Calahorro, Nicola Casati, José Manuel Seco, Marta Aragones-Anglada, Peyman Z. Moghadam, David Fairen-Jimenez, Antonio Rodríguez-Diéguez|2018|J.Mater.Chem.A|6|17409|doi:10.1039/C8TA04316G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zmmjr
title: CCDC 1836115: Experimental Crystal Structure Determination

description: Related Article: Javier Cepeda, Manuel Pérez-Mendoza, Antonio J. Calahorro, Nicola Casati, José Manuel Seco, Marta Aragones-Anglada, Peyman Z. Moghadam, David Fairen-Jimenez, Antonio Rodríguez-Diéguez|2018|J.Mater.Chem.A|6|17409|doi:10.1039/C8TA04316G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/2fx6b76ks7.2
title: Data for: Antimicrobial photodynamic therapy (aPDT) and photobiomodulation (PBM - 660 nm) in a dog with chronic gingivostomatitis.
DOI: 10.5517/ccdc.csd.cc14523h
title: CCDC 1047555: Experimental Crystal Structure Determination

description: Related Article: Abdul Malik P. Peedikakkal, Hong Sheng Quah, Stacey Chia, Almaz S. Jalilov, Abdul Rajjak Shaikh, Hasan Ali Al-Mohsin, Khushboo Yadava, Wei Ji, Jagadese J. Vittal|2018|Inorg.Chem.|57|11341|doi:10.1021/acs.inorgchem.8b00637
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1mkcn6
title: CCDC 1506248: Experimental Crystal Structure Determination

description: Related Article: Xiao-Na Wu, Zhi-Hao You, Yan-Kai Liu|2018|Org.Biomol.Chem.|16|6507|doi:10.1039/C8OB01743C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1npwz6
title: CCDC 1540389: Experimental Crystal Structure Determination

description: Related Article: Tushar S. Basu Baul, Dhrubajyoti Dutta, Andrew Duthie, Bruno G. M. Rocha, M. Fátima C. Guedes da Silva, Shashank Saurav, Sunil K. Manna|2018|Organometallics|37|2961|doi:10.1021/acs.organomet.8b00278
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.