cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5258737
title: Conformers of canonical 2'-deoxyribonucleotides, the model DNA monomers

description: The geometries and molecular properties (DFT energies, dipole moments, traceless quadrupole moments, APT charges, RESP charges) of conformers of the four canonical 2'-deoxyribonucleotide-5'-monophosphates (namely, 613 conformers of dCMP, 660 of dTMP, 726 of dAMP and 745 of dGMP), taken from the following studies:<br><br>* Nikolaienko, T. Yu.; Hovorun D. M. Quantum-mechanical conformational analysis of 2'-deoxycytidilic acid molecule – the DNA structural unit. Dopov. Nac. akad. nauk Ukr. 2010, 9, 173–184.<br><br>* Nikolaienko, T. Yu.; Bulavin, L. A.; Hovorun D. M. Quantum-mechanical conformational analysis of the 5'-thymidilic acid molecule. Ukr. Biokhim. Zh. 2010, 82(6), 76–86.<br><br>* Nikolaienko, T. Yu.; Bulavin, L. A.; Hovorun D. M. The 5'-deoxyadenylic acid molecule con formational capacity : Quantum-mechanical investigation using density functional theory (DFT). Ukr. Biokhim. Zh. 2011, 83(4), 16–28.<br><br>* Nikolaienko, T. Yu.; Bulavin, L. A.; Hovorun D. M. Conformational capacity of 5'-deoxyguanylic acid molecule investigated by quantum-mechanical methods. Biopolym. Cell. 2011, 27(4), 291-299.<br><br>The structures are optimized at B3LYP/6-31G(d,p) level of theory.<br><br>Please, cite the mentioned original research papers in case if any data from this dataset is used.<br>
DOI: 10.6084/m9.figshare.5258791
title: Saltugilia splendens subsp. splendens (GH) flower confocal images

description: Petal epidermal cells of Saltugilia splendens subsp. splendens grown in the greenhouse from seeds obtained from Rancho Santa Ana Botanical Garden. Flower material fixed in glutaraldehyde, followed by staining with aniline blue. Imaged on a Zeiss confocal microscope. Published in Frontiers in Plant Sciences in 2016, doi:10.3389/fpls.2015.01144<br>
DOI: 10.6084/m9.figshare.5258794.v1
title: Photos of slides from confocal imaging

description: Photos of slides used for confocal microscopy. Flower material fixed in glutaraldehyde, followed by staining with aniline blue. Imaged on a Zeiss confocal microscope. Published in Frontiers in Plant Sciences in 2016, doi:10.3389/fpls.2015.01144
DOI: 10.6084/m9.figshare.5258680
title: Saltugilia splendens subsp. splendens field sample flower confocal images

description: Petal epidermal cells of Saltugilia splendens subsp. splendens collected from Joshua Tree National Park. Flower material fixed in glutaraldehyde, followed by staining with aniline blue. Imaged on a Zeiss confocal microscope. Published in Frontiers in Plant Sciences in 2016, doi:10.3389/fpls.2015.01144<br>
DOI: 10.6084/m9.figshare.5258737.v1
title: Conformers of canonical 2'-deoxyribonucleotides, the model DNA monomers

description: The geometries and molecular properties (DFT energies, dipole moments, traceless quadrupole moments, APT charges, RESP charges) of conformers of the four canonical 2'-deoxyribonucleotide-5'-monophosphates (namely, 613 conformers of dCMP, 660 of dTMP, 726 of dAMP and 745 of dGMP), taken from the following studies:<br><br>* Nikolaienko, T. Yu.; Hovorun D. M. Quantum-mechanical conformational analysis of 2'-deoxycytidilic acid molecule – the DNA structural unit. Dopov. Nac. akad. nauk Ukr. 2010, 9, 173–184.<br><br>* Nikolaienko, T. Yu.; Bulavin, L. A.; Hovorun D. M. Quantum-mechanical conformational analysis of the 5'-thymidilic acid molecule. Ukr. Biokhim. Zh. 2010, 82(6), 76–86.<br><br>* Nikolaienko, T. Yu.; Bulavin, L. A.; Hovorun D. M. The 5'-deoxyadenylic acid molecule con formational capacity : Quantum-mechanical investigation using density functional theory (DFT). Ukr. Biokhim. Zh. 2011, 83(4), 16–28.<br><br>* Nikolaienko, T. Yu.; Bulavin, L. A.; Hovorun D. M. Conformational capacity of 5'-deoxyguanylic acid molecule investigated by quantum-mechanical methods. Biopolym. Cell. 2011, 27(4), 291-299.<br><br>The structures are optimized at B3LYP/6-31G(d,p) level of theory.<br><br>Please, cite the mentioned original research papers in case if any data from this dataset is used.<br>
DOI: 10.6084/m9.figshare.5258791.v1
title: Saltugilia splendens subsp. splendens (GH) flower confocal images

description: Petal epidermal cells of Saltugilia splendens subsp. splendens grown in the greenhouse from seeds obtained from Rancho Santa Ana Botanical Garden. Flower material fixed in glutaraldehyde, followed by staining with aniline blue. Imaged on a Zeiss confocal microscope. Published in Frontiers in Plant Sciences in 2016, doi:10.3389/fpls.2015.01144<br>
DOI: 10.6084/m9.figshare.5258677
title: Saltugilia splendens subsp. grantii flower confocal images

description: Petal epidermal cells of Saltugilia splendens subsp. grantii. Flower material fixed in glutaraldehyde, followed by staining with aniline blue. Imaged on a Zeiss confocal microscope. Published in Frontiers in Plant Sciences in 2016, doi:10.3389/fpls.2015.01144<br>
DOI: 10.6084/m9.figshare.5258680.v1
title: Saltugilia splendens subsp. splendens field sample flower confocal images

description: Petal epidermal cells of Saltugilia splendens subsp. splendens collected from Joshua Tree National Park. Flower material fixed in glutaraldehyde, followed by staining with aniline blue. Imaged on a Zeiss confocal microscope. Published in Frontiers in Plant Sciences in 2016, doi:10.3389/fpls.2015.01144<br>
DOI: 10.6084/m9.figshare.5258668
title: Saltugilia australis flower confocal images

description: Petal epidermal cells of Saltugilia australis. Flower material fixed in glutaraldehyde, followed by staining with aniline blue. Imaged on a Zeiss confocal microscope. Published in Frontiers in Plant Sciences in 2016, doi:10.3389/fpls.2015.01144<br>
DOI: 10.6084/m9.figshare.5258674
title: Saltugilia latimeri flower confocal images

description: Petal epidermal cells of Saltugilia latimeri. Flower material fixed in glutaraldehyde, followed by staining with aniline blue. Imaged on a Zeiss confocal microscope. Published in Frontiers in Plant Sciences in 2016, doi:10.3389/fpls.2015.01144<br>
DOI: 10.6084/m9.figshare.5258677.v1
title: Saltugilia splendens subsp. grantii flower confocal images

description: Petal epidermal cells of Saltugilia splendens subsp. grantii. Flower material fixed in glutaraldehyde, followed by staining with aniline blue. Imaged on a Zeiss confocal microscope. Published in Frontiers in Plant Sciences in 2016, doi:10.3389/fpls.2015.01144<br>
DOI: 10.6084/m9.figshare.5258668.v1
title: Saltugilia australis flower confocal images

description: Petal epidermal cells of Saltugilia australis. Flower material fixed in glutaraldehyde, followed by staining with aniline blue. Imaged on a Zeiss confocal microscope. Published in Frontiers in Plant Sciences in 2016, doi:10.3389/fpls.2015.01144<br>
DOI: 10.6084/m9.figshare.5258671
title: Saltugilia caruifolia corolla confocal images

description: Petal epidermal cells of Saltugilia caurifolia. Flower material fixed in glutaraldehyde, followed by staining with aniline blue. Imaged on a Zeiss confocal microscope. Published in Frontiers in Plant Sciences in 2016, doi:10.3389/fpls.2015.01144<br>
DOI: 10.6084/m9.figshare.5258671.v1
title: Saltugilia caruifolia corolla confocal images

description: Petal epidermal cells of Saltugilia caurifolia. Flower material fixed in glutaraldehyde, followed by staining with aniline blue. Imaged on a Zeiss confocal microscope. Published in Frontiers in Plant Sciences in 2016, doi:10.3389/fpls.2015.01144<br>
DOI: 10.6084/m9.figshare.5258674.v1
title: Saltugilia latimeri flower confocal images

description: Petal epidermal cells of Saltugilia latimeri. Flower material fixed in glutaraldehyde, followed by staining with aniline blue. Imaged on a Zeiss confocal microscope. Published in Frontiers in Plant Sciences in 2016, doi:10.3389/fpls.2015.01144<br>
DOI: 10.6084/m9.figshare.5258662
title: Gilia stellata flower confocal images

description: Petal epidermal cells of Gilia stellata. Flower material fixed in glutaraldehyde, followed by staining with aniline blue. Imaged on a Zeiss confocal microscope. Published in Frontiers in Plant Sciences in 2016, doi:10.3389/fpls.2015.01144<br>
DOI: 10.6084/m9.figshare.5258662.v1
title: Gilia stellata flower confocal images

description: Petal epidermal cells of Gilia stellata. Flower material fixed in glutaraldehyde, followed by staining with aniline blue. Imaged on a Zeiss confocal microscope. Published in Frontiers in Plant Sciences in 2016, doi:10.3389/fpls.2015.01144<br>
DOI: 10.6084/m9.figshare.5258557
title: Tree Canopy Change, 2009-2014, Montgomery County, MD

description: <pre>This layer is a high-resolution tree canopy change-detection layer for Montgomery County, Maryland. It contains three tree-canopy classes for the period 2009-2014: (1) No Change; (2) Gain; and (3) Loss. It was created by extracting tree canopy from an existing high-resolution land-cover map for 2009 and a high resolution tree canopy map for 2014 and then comparing the mapped trees directly. Tree canopy that existed during both time periods was assigned to the No Change category while trees removed by development, storms, or disease were assigned to the Loss class. Trees planted during the interval were assigned to the Gain category, as were the edges of existing trees that expanded noticeably. Direct comparison was possible because both the 2009 and 2014 maps were created using object-based image analysis (OBIA) and included similar source datasets (LiDAR-derived surface models, multispectral imagery, and thematic GIS inputs). No accuracy assessment was conducted, but the dataset was subjected to thorough manual review and correction.</pre>
DOI: 10.6084/m9.figshare.5258533
title: Treatment with the WNT5A-mimicking Peptide Foxy-5 Effectively Reduces the Metastatic Spread of WNT5A-low Prostate Cancer Cells in an Orthotopic Mouse Model

description: The raw data behind the figures of the published paper
DOI: 10.6084/m9.figshare.5258545
title: Tree Canopy Change, 2009-2014, Prince George's County, MD

description: <pre>This layer is a high-resolution tree canopy change-detection layer for Prince Georges County, Maryland. It contains three tree-canopy classes for the period 2009-2014: (1) No Change; (2) Gain; and (3) Loss. It was created by first mapping tree canopy in 2014 using LiDAR and multispectral data and then comparing the new map directly to an existing tree-canopy map for the year 2009. Tree canopy that existed during both time periods was assigned to the No Change category while trees removed by development, storms, or disease were assigned to the Loss class. Trees planted during the interval were assigned to the Gain category, as were the edges of existing trees that expanded noticeably. Direct comparison was possible because both the 2009 and 2014 maps were created using object-based image analysis (OBIA) and included similar source datasets (LiDAR-derived surface models, multispectral imagery, and thematic GIS inputs). No accuracy assessment was conducted, but the dataset was subjected to comprehensive manual review and correction.</pre>
DOI: 10.6084/m9.figshare.5258545.v1
title: Tree Canopy Change, 2009-2014, Prince George's County, MD

description: <pre>This layer is a high-resolution tree canopy change-detection layer for Prince Georges County, Maryland. It contains three tree-canopy classes for the period 2009-2014: (1) No Change; (2) Gain; and (3) Loss. It was created by first mapping tree canopy in 2014 using LiDAR and multispectral data and then comparing the new map directly to an existing tree-canopy map for the year 2009. Tree canopy that existed during both time periods was assigned to the No Change category while trees removed by development, storms, or disease were assigned to the Loss class. Trees planted during the interval were assigned to the Gain category, as were the edges of existing trees that expanded noticeably. Direct comparison was possible because both the 2009 and 2014 maps were created using object-based image analysis (OBIA) and included similar source datasets (LiDAR-derived surface models, multispectral imagery, and thematic GIS inputs). No accuracy assessment was conducted, but the dataset was subjected to comprehensive manual review and correction.</pre>
DOI: 10.6084/m9.figshare.5258533.v1
title: Treatment with the WNT5A-mimicking Peptide Foxy-5 Effectively Reduces the Metastatic Spread of WNT5A-low Prostate Cancer Cells in an Orthotopic Mouse Model

description: The raw data behind the figures of the published paper
DOI: 10.6084/m9.figshare.5258500
title: Gilia brecciarum subsp. brecciarum flower confocal images

description: Petal epidermal cells of Gilia brecciarum subsp. brecciarum. Flower material fixed in glutaraldehyde, followed by staining with aniline blue. Imaged on a Zeiss confocal microscopy. Published in Frontiers in Plant Sciences in 2016, doi:10.3389/fpls.2015.01144
DOI: 10.6084/m9.figshare.11865021
title: Hair cortisol levels in posttraumatic stress disorder and metabolic syndrome

description: Individuals with post-traumatic stress disorder (PTSD) evidence increased rates of metabolic syndrome (MetS), and both PTSD and MetS are associated with alterations in hypothalamic–pituitary–adrenal (HPA) axis function. Few investigations have examined the possible role of HPA-axis dysfunction in the co-occurrence of PTSD and MetS. In a case-control study, we aimed to determine whether hair cortisol concentrations (HCC) were associated with (i) PTSD caseness and severity and (ii) PTSD and MetS co-occurrence. We used the Clinician-Administered PTSD Scale for DSM-5 (CAPS-5) to determine PTSD diagnoses and severity scores in 216 females of mixed ancestry aged between 20 and 79 years (<i>M</i> = 43.8, SD =13.3). Hair samples, representing a three-month retrospective window of cortisol levels, were obtained and analyzed utilizing liquid chromatography-tandem mass spectrometry. We constructed multivariate linear regression models to evaluate whether PTSD diagnosis, PTSD severity, and MetS comorbidity were associated with HCC, controlling for potential confounders. HCC were significantly higher (adj <i>β</i> = 0.154, <i>p</i> = .033; Cohen’s <i>d</i> = 0.44) in PTSD patients (<i>n</i> = 110) than trauma-exposed controls (<i>n</i> = 106) and CAPS severity scores (adj <i>β</i> = 0.207, <i>p</i> = .005) were significantly associated with HCC. MetS was not associated with HCC and there were no significant interactions between PTSD and MetS on HCC. This study provides evidence of a chronically dysregulated neuroendocrine mediated stress response in PTSD, with a clear dose-response relationship. HCC do not, however, appear to have specificity for the comorbidity of PTSD and MetS in this sample.LAY SUMMARYWe found that levels of the stress hormone, cortisol, measured in hair samples were significantly higher in South African women with post-traumatic stress disorder (PTSD) than in women who had also experienced trauma but did not have PTSD. Hair cortisol levels were, however, not associated with metabolic syndrome, a cluster of risk factors for heart disease, in the women studied. We thus show that South African women with PTSD have elevated long-term stress hormone levels and that this effect is related to PTSD and not solely due to trauma exposure. We found that levels of the stress hormone, cortisol, measured in hair samples were significantly higher in South African women with post-traumatic stress disorder (PTSD) than in women who had also experienced trauma but did not have PTSD. Hair cortisol levels were, however, not associated with metabolic syndrome, a cluster of risk factors for heart disease, in the women studied. We thus show that South African women with PTSD have elevated long-term stress hormone levels and that this effect is related to PTSD and not solely due to trauma exposure.
DOI: 10.6084/m9.figshare.11865021.v1
title: Hair cortisol levels in posttraumatic stress disorder and metabolic syndrome

description: Individuals with post-traumatic stress disorder (PTSD) evidence increased rates of metabolic syndrome (MetS), and both PTSD and MetS are associated with alterations in hypothalamic–pituitary–adrenal (HPA) axis function. Few investigations have examined the possible role of HPA-axis dysfunction in the co-occurrence of PTSD and MetS. In a case-control study, we aimed to determine whether hair cortisol concentrations (HCC) were associated with (i) PTSD caseness and severity and (ii) PTSD and MetS co-occurrence. We used the Clinician-Administered PTSD Scale for DSM-5 (CAPS-5) to determine PTSD diagnoses and severity scores in 216 females of mixed ancestry aged between 20 and 79 years (<i>M</i> = 43.8, SD =13.3). Hair samples, representing a three-month retrospective window of cortisol levels, were obtained and analyzed utilizing liquid chromatography-tandem mass spectrometry. We constructed multivariate linear regression models to evaluate whether PTSD diagnosis, PTSD severity, and MetS comorbidity were associated with HCC, controlling for potential confounders. HCC were significantly higher (adj <i>β</i> = 0.154, <i>p</i> = .033; Cohen’s <i>d</i> = 0.44) in PTSD patients (<i>n</i> = 110) than trauma-exposed controls (<i>n</i> = 106) and CAPS severity scores (adj <i>β</i> = 0.207, <i>p</i> = .005) were significantly associated with HCC. MetS was not associated with HCC and there were no significant interactions between PTSD and MetS on HCC. This study provides evidence of a chronically dysregulated neuroendocrine mediated stress response in PTSD, with a clear dose-response relationship. HCC do not, however, appear to have specificity for the comorbidity of PTSD and MetS in this sample.LAY SUMMARYWe found that levels of the stress hormone, cortisol, measured in hair samples were significantly higher in South African women with post-traumatic stress disorder (PTSD) than in women who had also experienced trauma but did not have PTSD. Hair cortisol levels were, however, not associated with metabolic syndrome, a cluster of risk factors for heart disease, in the women studied. We thus show that South African women with PTSD have elevated long-term stress hormone levels and that this effect is related to PTSD and not solely due to trauma exposure. We found that levels of the stress hormone, cortisol, measured in hair samples were significantly higher in South African women with post-traumatic stress disorder (PTSD) than in women who had also experienced trauma but did not have PTSD. Hair cortisol levels were, however, not associated with metabolic syndrome, a cluster of risk factors for heart disease, in the women studied. We thus show that South African women with PTSD have elevated long-term stress hormone levels and that this effect is related to PTSD and not solely due to trauma exposure.
DOI: 10.17632/8zxc3kzwxj.2
title: Layer for regionalized LCA data (LCI) and characterization factors (LCIA)

description: The data contains a shapefile with IDs in "Regionalization shapefile.zip" and a respective KML layer (for Google Earth) in "regionalization_layer_v1.kmz". It is meant to be used to aggregate, store and share regionalized results from LCA and LCIA, as the layer covers the main features for impact assessment and policy level. It contains 50’626 units (48’612 terrestrial and 2'014 marine regions). The ID description and correspondance to the original layer are provided in "Description shapefile layer.xlsx", incl. some additional information from the original layers. The information related to countries is in yellow, ecoregions in green, urban in grey and watersheds in light blue. Coastal marine ecoregions are in marked dark blue and fisheries purple. Through the information in this layer, existing regionalized LCIA results such as recommended methods for land and water use can be directly linked. However, they can also be linked just based on ecoregions, watersheds, countries or urban areas using the original shapefiles used to compile this dataset through respective IDs. The following 6 layers have been used: - Urban areas: Natural Earth, Urban Areas, version 4.0.0, 11877 Urban areas Schneider, A., M. A. Friedl and D. Potere (2009) A new map of global urban extent from MODIS data. Environmental Research Letters, volume 4, article 044003. - Country boundaries (subunits) Natural Earth, Admin 0 – Details, version 4.1.0, 197 countries https://www.naturalearthdata.com/downloads/10m-cultural-vectors/10m-admin-0-details/ - Ecoregions Terrestrial Ecoregions of the World, WWF (2012), 867 terrestrial ecoregions Olson, D. M., Dinerstein, E., Wikramanayake, E. D., Burgess, N. D., Powell, G. V. N., Underwood, E. C., D'Amico, J. A., Itoua, I., Strand, H. E., Morrison, J. C., Loucks, C. J., Allnutt, T. F., Ricketts, T. H., Kura, Y., Lamoreux, J. F., Wettengel, W. W., Hedao, P., Kassem, K. R. 2001. Terrestrial ecoregions of the world: a new map of life on Earth. Bioscience 51(11):933-938. - Watersheds Aware method: Input data (WaterGAP), 11049 watersheds; http://www.wulca-waterlca.org/aware.html Müller Schmied, H., Eisner, S., Franz, D., Wattenbach, M., Portmann, F. T., Flörke, M., and Döll, P.: Sensitivity of simulated global-scale freshwater fluxes and storages to input data, hydrological model structure, human water use and calibration, Hydrol. Earth Syst. Sci., 18, 3511-3538, doi:10.5194/hess-18-3511-2014, 2014 - Marine ecosystems: Marine Ecoregions of the World, WWF (2007) Marine Ecoregions of the World: A Bioregionalization of Coastal and Shelf Areas (2007) Spalding M Fox H Allen G Davidson N Ferdaña Z et. al. BioScience 2007 vol: 57 (7) pp: 573-583 - Fishing areas: FAO Statistical Areas for Fishery Purposes - FAO Statistical areas (Marine ) - No coastline (for use with custom coastline resolutions) - GIS data (WFS - SHP). FAO (2019). FAO Statistical Areas for Fishery Purposes. In: FAO Fisheries and Aquaculture Department [online]. Rome.
DOI: 10.17632/zp9p6sr2fk.1
title: An Inexpensive Modular Gravimetric Robotic Gantry Soil Moisture Screener and Controller

description: Support Files for An Inexpensive Modular Gravimetric Robotic Gantry Soil Moisture Screener and Controller
DOI: 10.6084/m9.figshare.5258077
title: Thesis: Multiscale simulation of slip flow and adsorption in carbon nanopores (supplementary materials)

description: Supplementary materials for Thesis: Multiscale simulation of slip flow and adsorption in carbon nanopores.
DOI: 10.6084/m9.figshare.5258020
title: Bondi accretion, numerical hydrodynamic simulations

description: Spherically symmetric hydrodynamical simulations of Bondi accretion, performed in two and three dimensions, using the PLUTO code. <br>These simulations reproduce the B1 and G3 cases of Ruffert et al. 1994 ApJ.<br>Part of MsC dissertation work of Henrique Gubolin, under the supervision of Prof. Rodrigo Nemmen.<br>Included are:• DBL datasets with grids, density, velocities and pressure fields• initial and boundary condition information necessary to reproduce the simulations with Pluto• movies showing the evolution of some fields
DOI: 10.6084/m9.figshare.5257936
title: McManamay_PNAS_data.zip

description: <b>Data from: </b><b>McManamay et al. (2017) US cities can manage national hydrology and biodiversity using local infrastructure policy. PNAS, </b><i><b>DOI: 10.1073/pnas.1706201114 </b>(full citation provided below)</i>The data include hydrologic alteration and associated biodiversity impacts across the entire US related to city infrastructures: urban land transformation and electricity production sectors. Hydrologic and biodiversity impacts of individual city infrastructures are also provided and include: Atlanta, Knoxville, Las Vegas, Phoenix, and Tucson. If data are used, please use the following citation:<br> <br> <b><i>McManamay R.A., S. Surendran Nair, C.R. DeRolph, B.L. Ruddell, A.M. Morton, R.N. Stewart, M.J. Troia, L. Tran, H. Kim, B.L. Bhaduri. (2017) US cities can manage national hydrology and biodiversity using local infrastructure policy. Proceedings of the National Academy of Sciences, DOI: 10.1073/pnas.1706201114</i></b> Please refer to the paper and SI for methods and background. Meta-data is provided.