cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26673555
title: Additional file 2 of Effects of n-3 polyunsaturated fatty acid supplementation on appetite: a systematic review and meta-analysis of controlled clinical trials

description: Additional file 2: Table S2. Dose of DHA for intervention (studies used for Meta-analysis).
DOI: 10.6084/m9.figshare.26673555.v1
title: Additional file 2 of Effects of n-3 polyunsaturated fatty acid supplementation on appetite: a systematic review and meta-analysis of controlled clinical trials

description: Additional file 2: Table S2. Dose of DHA for intervention (studies used for Meta-analysis).
DOI: 10.6084/m9.figshare.26605699.v1
title: Additional file 1 of Starvar: symptom-based tool for automatic ranking of variants using evidence from literature and genomes

description: Additional file 1. This file contains the source code (in python) of STARVar.
DOI: 10.15468/dl.a6zhkh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.439122 -32.609533, 148.439122 -32.611779, 148.441367 -32.611779, 148.441367 -32.609533, 148.439122 -32.609533))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067131-240626123714530/datasets/export for details.
DOI: 10.15468/dl.d4cdwy
title: Occurrence Download

description: A dataset listing the 37756 species recorded in GBIF matching the query:
{
 "and" : [
 "GadmGid is GBR.4_1",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 37756 records were derived from 763 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067109-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3njcf5
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Leandrites deschampsi (Nobili, 1903), Leandrites Holthuis, 1950)"
 ]
}

 The dataset includes 119 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021036-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ctdax
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Arachnochium mirabile (Kemp, 1917), Leandrites deschampsi (Nobili, 1903))"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021037-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ytua5
title: Occurrence Download

description: A dataset containing 786375 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aves)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-71.7466870203874 -13.335575452516,-70.8425032116414 -13.335575452516,-70.8425032116414 -12.2264196517971,-71.7466870203874 -12.2264196517971,-71.7466870203874 -13.335575452516))"
 ]
}

 The dataset includes 786375 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021031-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h2yztz
title: Occurrence Download

description: A dataset containing 560 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bitis gabonica Duméril, Bibron & Duméril, 1854"
 ]
}

 The dataset includes 560 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021038-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tqvdvu
title: Occurrence Download

description: A dataset containing 4632 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anopheles albimanus Wiedemann, 1820"
 ]
}

 The dataset includes 4632 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021039-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14838012
title: CO2-CO2 Collision-Induced Absorption: binary absorption coefficients (1100 cm-1 to 1800 cm-1) from 300 K to 500 K

description: A set of measurements has been carried out to investigate the temperature dependence of the CO2-CO2 collision-induced absorption from 1100 cm−1 to 1800 cm−1 (Fermi dyad) above room temperature (from 300 K to 500 K, at step of 25 K). The binary absorption coefficients are reported here. Data are formatted according to the CIA section of the HITRAN database (https://hitran.org/cia/).
DOI: 10.5281/zenodo.14838013
title: CO2-CO2 Collision-Induced Absorption: binary absorption coefficients (1100 cm-1 to 1800 cm-1) from 300 K to 500 K

description: A set of measurements has been carried out to investigate the temperature dependence of the CO2-CO2 collision-induced absorption from 1100 cm−1 to 1800 cm−1 (Fermi dyad) above room temperature (from 300 K to 500 K, at step of 25 K). The binary absorption coefficients are reported here. Data are formatted according to the CIA section of the HITRAN database (https://hitran.org/cia/).
DOI: 10.15468/dl.r56gyc
title: Occurrence Download

description: A dataset containing 118096 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Observation, Specimen)",
 "Geometry POLYGON((-129.67 38.44,-114.54 38.44,-114.54 42.28,-129.67 42.28,-129.67 38.44))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Fungi"
 ]
}

 The dataset includes 118096 records from 141 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021035-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u3un8s
title: Occurrence Download

description: A dataset containing 7151 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Observation, Specimen)",
 "Geometry POLYGON((-129.67 38.44,-114.54 38.44,-114.54 42.28,-129.67 42.28,-129.67 38.44))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Ochrophyta"
 ]
}

 The dataset includes 7151 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021042-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9xwgab
title: Occurrence Download

description: A dataset containing 53422 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cariamiformes"
 ]
}

 The dataset includes 53422 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021043-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14837250
title: Investigating the Role of Onchocerca ochengi in Epilepsy Development: A Gerbil Model Study

description: Abstract 

Background: Onchocerca volvulus infection is linked to onchocerciasis-associated epilepsy (OAE) in humans, but the role of Onchocerca ochengi in epilepsy development remains unexplored. This study aimed to investigate whether O. ochengi infection contributes to epilepsy development.

Methodology/Principal Findings: Gerbils were implanted with O. ochengi worm masses (test group) or underwent sham surgery (control group). Behavioral and physical assessments were performed between days 15–19 using multiple tests, including the elevated plus maze, open-field, object recognition, and hanging wire tests. On day 21, gerbils were sacrificed, and body/organ weights were recorded, along with worm mass survival. Implantation of 15 worm masses resulted in 100% mortality in the test group, while implantation of 10 worm masses resulted in 53.3% mortality, with all control animals surviving. At day 21, worm mass survival averaged 1.4 out of 10, with a viability score of 93.3%. Test animals showed significant reductions in body weight and increased spleen weight compared to controls, but no significant behavioral differences were observed.

Conclusions/Significance: While O. ochengi infection caused notable physical effects, including high mortality and changes in body/organ weights, no behavioral evidence of epilepsy was observed. The high mortality rate and limited observation period restrict the interpretation of these findings. Further studies with larger cohorts and longer observation periods are needed to assess the potential role of Onchocerca spp. in epilepsy development. To the best of our knowledge, this study represents the first attempt to establish an animal model for OAE.
DOI: 10.5281/zenodo.14837251
title: Investigating the Role of Onchocerca ochengi in Epilepsy Development: A Gerbil Model Study

description: Abstract 

Background: Onchocerca volvulus infection is linked to onchocerciasis-associated epilepsy (OAE) in humans, but the role of Onchocerca ochengi in epilepsy development remains unexplored. This study aimed to investigate whether O. ochengi infection contributes to epilepsy development.

Methodology/Principal Findings: Gerbils were implanted with O. ochengi worm masses (test group) or underwent sham surgery (control group). Behavioral and physical assessments were performed between days 15–19 using multiple tests, including the elevated plus maze, open-field, object recognition, and hanging wire tests. On day 21, gerbils were sacrificed, and body/organ weights were recorded, along with worm mass survival. Implantation of 15 worm masses resulted in 100% mortality in the test group, while implantation of 10 worm masses resulted in 53.3% mortality, with all control animals surviving. At day 21, worm mass survival averaged 1.4 out of 10, with a viability score of 93.3%. Test animals showed significant reductions in body weight and increased spleen weight compared to controls, but no significant behavioral differences were observed.

Conclusions/Significance: While O. ochengi infection caused notable physical effects, including high mortality and changes in body/organ weights, no behavioral evidence of epilepsy was observed. The high mortality rate and limited observation period restrict the interpretation of these findings. Further studies with larger cohorts and longer observation periods are needed to assess the potential role of Onchocerca spp. in epilepsy development. To the best of our knowledge, this study represents the first attempt to establish an animal model for OAE.
DOI: 10.15468/dl.ygq36p
title: Occurrence Download

description: A dataset containing 131797 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Aedes albopictus (Skuse, 1894), Anopheles albimanus Wiedemann, 1820)"
 ]
}

 The dataset includes 131797 records from 208 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021041-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14838037
title: Results of LA-ICP-MS U-Pb dating and Hf isotope measurements in zircon from volcanic and intrusive hypabyssal rocks, Chortomlyk greenstone structure

description: Data file
DOI: 10.5281/zenodo.14838038
title: Results of LA-ICP-MS U-Pb dating and Hf isotope measurements in zircon from volcanic and intrusive hypabyssal rocks, Chortomlyk greenstone structure

description: Data file
DOI: 10.15468/dl.2cw4zg
title: Occurrence Download

description: A dataset containing 53422 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cariamiformes"
 ]
}

 The dataset includes 53422 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021045-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14838050
title: Top10
DOI: 10.5281/zenodo.14838051
title: Top10
DOI: 10.15468/dl.ub82v4
title: Occurrence Download

description: A dataset containing 110616 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aves)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-71.746256473748 -12.8187294533239,-70.8425032116414 -12.8187294533239,-70.8425032116414 -12.2264196517971,-71.746256473748 -12.2264196517971,-71.746256473748 -12.8187294533239))"
 ]
}

 The dataset includes 110616 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021044-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.da3w27
title: Occurrence Download

description: A dataset containing 1094 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Geositta saxicolina Taczanowski, 1875"
 ]
}

 The dataset includes 1094 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021046-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13317712
title: National Checklists 2019: Sweden Species List

description: Lists of taxa for each country and a few other administrative zones harvested from effechecka using simplified versions of geonames polygons. See https://github.com/diatomsRcool/checklists for details.
A list of species from Sweden collected using effechecka and geonames polygons
DOI: 10.6084/m9.figshare.28377056
title: Eye Contact & Virtual Interview Outcomes

description: In this study, we examined how an applicant’s eye gaze during a virtual interview influences interviewer evaluations and hiring decisions. A total of 194 participants recruited from Prolific were randomly assigned to one of two conditions: in the Camera Focus Condition, the applicant maintained eye contact with a camera positioned above the monitor, whereas in the Monitor Focus Condition, the applicant looked directly at the center of the monitor. All other aspects of the interview, including the script, actor, and setting, were kept identical. After watching the interview video and reading a brief job description, participants rated their experience of eye contact, the likability of the applicant, and the applicant's estimated intelligence, and made hiring-related decisions such as recommending a starting salary, assessing the applicant’s suitability, and indicating the likelihood of further interview or selection. Additionally, demographic information and attention-check responses were collected to ensure the integrity of the data.
DOI: 10.34740/kaggle/dsv/10698756
title: Top Spotify Songs in 73 Countries (Daily Updated)
DOI: 10.5281/zenodo.10775513
title: Data and models for "An image-computable model of speeded decision-making"

description: Lost in Migration gameplay data and trained models for:

Jaffe, P. I., Gustavo, X. S. R., Schafer, R. J., Bissett, P. G., Poldrack, R. A. An image-computable model of speeded decision-making. eLife 13, RP98351 (2024).

 

This dataset can be used to reproduce all of the results of the manuscript, following the instructions in the code repository for the paper: https://github.com/pauljaffe/vam.

The dataset includes the following components:

gameplay_data.zip: Trial-level gameplay metadata for Lost in Migration. Lost in Migration is a variant of the flanker task offered as a part of the Lumosity cognitive training platform (Lumos Labs, Inc.). The .zip file includes a separate .csv file for each of the 75 Lumosity users (participants) that we trained models on. Each .csv file has one row per trial with the following fields/columns: "anon_id", numerical identifier for the Lumosity user; "nth_play", the nth gameplay of Lost in Migration for this user; "trial", the nth trial for the current gameplay; "xpos", the signed horizontal distance from the center of the target bird to the left edge of the game window (pixels, non-negative); "ypos", the signed vertical distance from the center of the target bird to the bottom edge of the game window (pixels, non-negative); "flanker_direction", (L/R/U/D); "response_direction", (L/R/U/D); "target_direction", (L/R/U/D); "response_time", (ms); "stimulus_layout", numerical code for the layout of the bird flock for the current trial (0: horizontal line, 1: vertical line, 2: cross, 3: <, 4: >, 5: v, 6: ^).

vam_models.zip: Parameters for the 75 visual accumulator models (VAMs) analyzed in the manuscript.

task_opt_models.zip: Parameters for the 75 task-optimized models analyzed in the manuscript.

metadata.csv: Metadata for each Lumosity user that a VAM/task-optimized model was trained on. The .csv file has one row per user with the following fields/columns: "user_id", numerical identifier for the Lumosity user (same as "anon_id" in gameplay_data.zip); "gender", self-reported gender ('m', 'f', or null, indicating no response was given); "binned_age", age bucketed into decade-long bins (20-29, 30-39... 80-89).

derivatives.zip: The RTs/choices generated by the trained models, organized into separate folders by model type (vam/task_opt/binned_rt) and user ID.  Also includes a "summary_stats" folder with analysis products of the model activations and outputs.

graphics.zip: Image files used to create the visual stimuli from the gameplay metadata.

example_model_inputs.zip: The processed visual stimuli and gameplay data used as inputs to train one model (user ID 182). Note we provide instructions to recreate the stimuli and other model inputs for all models in the code repository.
description: For general inquiries about the data, please contact Paul Jaffe (pauljaffe7@gmail.com).
DOI: 10.5281/zenodo.14838065
title: Data and models for "An image-computable model of speeded decision-making"

description: Lost in Migration gameplay data and trained models for:

Jaffe, P. I., Gustavo, X. S. R., Schafer, R. J., Bissett, P. G., Poldrack, R. A. An image-computable model of speeded decision-making. eLife 13, RP98351 (2024).

 

This dataset can be used to reproduce all of the results of the manuscript, following the instructions in the code repository for the paper: https://github.com/pauljaffe/vam.

The dataset includes the following components:

gameplay_data.zip: Trial-level gameplay metadata for Lost in Migration. Lost in Migration is a variant of the flanker task offered as a part of the Lumosity cognitive training platform (Lumos Labs, Inc.). The .zip file includes a separate .csv file for each of the 75 Lumosity users (participants) that we trained models on. Each .csv file has one row per trial with the following fields/columns: "anon_id", numerical identifier for the Lumosity user; "nth_play", the nth gameplay of Lost in Migration for this user; "trial", the nth trial for the current gameplay; "xpos", the signed horizontal distance from the center of the target bird to the left edge of the game window (pixels, non-negative); "ypos", the signed vertical distance from the center of the target bird to the bottom edge of the game window (pixels, non-negative); "flanker_direction", (L/R/U/D); "response_direction", (L/R/U/D); "target_direction", (L/R/U/D); "response_time", (ms); "stimulus_layout", numerical code for the layout of the bird flock for the current trial (0: horizontal line, 1: vertical line, 2: cross, 3: <, 4: >, 5: v, 6: ^).

vam_models.zip: Parameters for the 75 visual accumulator models (VAMs) analyzed in the manuscript.

task_opt_models.zip: Parameters for the 75 task-optimized models analyzed in the manuscript.

metadata.csv: Metadata for each Lumosity user that a VAM/task-optimized model was trained on. The .csv file has one row per user with the following fields/columns: "user_id", numerical identifier for the Lumosity user (same as "anon_id" in gameplay_data.zip); "gender", self-reported gender ('m', 'f', or null, indicating no response was given); "binned_age", age bucketed into decade-long bins (20-29, 30-39... 80-89).

derivatives.zip: The RTs/choices generated by the trained models, organized into separate folders by model type (vam/task_opt/binned_rt) and user ID.  Also includes a "summary_stats" folder with analysis products of the model activations and outputs.

graphics.zip: Image files used to create the visual stimuli from the gameplay metadata.

example_model_inputs.zip: The processed visual stimuli and gameplay data used as inputs to train one model (user ID 182). Note we provide instructions to recreate the stimuli and other model inputs for all models in the code repository.
description: For general inquiries about the data, please contact Paul Jaffe (pauljaffe7@gmail.com).
DOI: 10.5281/zenodo.10532690
title: The data for new theoretical Fe II templates for bright quasars

description: The compressed '.tar.gz' files contain new theoretical Fe II templates that can be used for fitting UV to near-IR (1000-10000 Angstrom) spectra of quasars. The templates were developed using the latest Fe II atomic database of Smyth et al. (2019) within the CLOUDY C23.0 photoionization code with the following set of parameters.



H-ionizing photons flux: 17 ≤ log ΦH (cm−2 s−1) ≤ 22, and

Gas density: 9≤ log nH (cm−3) ≤ 14, 

Step size: 0.25 on log scale.

A fixed Hydrogen column density: 10^24 cm−2 

Abundance: solar 

SED shapes:


(1) Standard "agn.sed", a continuum similar to Mathews & Ferland (1987)

(2) Intermediate SED of (Jin et al., 2012)                         



The Fe II template is available for the microturbulence values 0, 20, 50 and 100 km/s.


(Note: The Fe II templates are also available in the GitHub link: https://github.com/Ashwani-88/Fe2_template)

Each tar.gz file consists of Fe II templates for different SED shapes. For each SED shape;

The new Fe II templates are available in the directory "Templates_including_only_total_Fe2". 

Additionally, we provide templates for the outward and inward Fe II emissions in the directory "Templates_including_outward_Fe2"

The directory for Fe II templates for a microturbulence velocity is named as

turb_vn

where n is the microturbulence velocity in km/s. The files within each directory are named as follows:

phia_nHb_mc.dat

where  a =  log value of the H-ionizing photon flux in cm−2 s−1,b = log value of the Hydrogen gas density in cm−3, andc =  the value of microturbulence in km/s.

Each template file in ``Templates_including_only_total_Fe2'' has two columns  

 First column: wavelength in Angstrom with 2 Angstrom binning    Second column: Fe II line intensity (in erg cm-2 s-1 A-1)

Templates in ``Templates_including_outward_Fe2'' has four columns.

First column: wavelength in Angstrom with 1000 logarithmic bins, each ~ 584 km/s wide,  between 1000 and 7000 Angstrom.     Second column: Total Fe II line intensity (in erg cm-2 s-1 A-1)      Third column:  Inward Fe II line intensity (in erg cm-2 s-1 A-1)       Fourth column: Outward Fe II line intensity (in erg cm-2 s-1 A-1)       

The Fe II line intensity includes a covering factor of 30 % and is scaled for our test object RM 102.