cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13545967
title: Additional file 2 of Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria

description: Additional file 2: Table S1. List of differentially expressed genes in Le. gelidum.
DOI: 10.6084/m9.figshare.13545970
title: Additional file 3 of Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria

description: Additional file 3: Table S2. List of differentially expressed genes in Lc. piscium.
DOI: 10.6084/m9.figshare.13545931.v1
title: Additional file 10 of Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria

description: Additional file 10: Table S6. List of known motifs enriched within upstream regions of all genes in Le. gelidum, Lc. piscium, and P. oligofermentans based on analysis of motif enrichment.
DOI: 10.6084/m9.figshare.13545946
title: Additional file 15 of Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria

description: Additional file 15: Table S11. List of motifs with significant E-value discovered based on upstream regions of clustered genes in Lc. piscium.
DOI: 10.6084/m9.figshare.13545949.v1
title: Additional file 16 of Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria

description: Additional file 16: Table S12. List of motifs with significant E-value discovered based on upstream regions of clustered genes in P. oligofermentans.
DOI: 10.6084/m9.figshare.13545937
title: Additional file 12 of Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria

description: Additional file 12: Table S8. List of motifs with significant E-value discovered based on upstream regions of upregulated genes in Le. gelidum.
DOI: 10.6084/m9.figshare.13545946.v1
title: Additional file 15 of Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria

description: Additional file 15: Table S11. List of motifs with significant E-value discovered based on upstream regions of clustered genes in Lc. piscium.
DOI: 10.6084/m9.figshare.13545970.v1
title: Additional file 3 of Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria

description: Additional file 3: Table S2. List of differentially expressed genes in Lc. piscium.
DOI: 10.6084/m9.figshare.13545937.v1
title: Additional file 12 of Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria

description: Additional file 12: Table S8. List of motifs with significant E-value discovered based on upstream regions of upregulated genes in Le. gelidum.
DOI: 10.6084/m9.figshare.13545955.v1
title: Additional file 18 of Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria

description: Additional file 18: Table S14. List of spoilage-related genes and log2 fold changes in the three species.
DOI: 10.6084/m9.figshare.13545976.v1
title: Additional file 5 of Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria

description: Additional file 5: Table S4. List of enrichment GO terms for up- and downregulated genes in Le. gelidum, Lc. piscium, P. oligofermentans.
DOI: 10.6084/m9.figshare.13545955
title: Additional file 18 of Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria

description: Additional file 18: Table S14. List of spoilage-related genes and log2 fold changes in the three species.
DOI: 10.6084/m9.figshare.13545976
title: Additional file 5 of Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria

description: Additional file 5: Table S4. List of enrichment GO terms for up- and downregulated genes in Le. gelidum, Lc. piscium, P. oligofermentans.
DOI: 10.6084/m9.figshare.13545940
title: Additional file 13 of Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria

description: Additional file 13: Table S9. List of motifs with significant E-value discovered based on upstream regions of upregulated genes in Lc. piscium.
DOI: 10.6084/m9.figshare.13545940.v1
title: Additional file 13 of Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria

description: Additional file 13: Table S9. List of motifs with significant E-value discovered based on upstream regions of upregulated genes in Lc. piscium.
DOI: 10.6084/m9.figshare.13545931
title: Additional file 10 of Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria

description: Additional file 10: Table S6. List of known motifs enriched within upstream regions of all genes in Le. gelidum, Lc. piscium, and P. oligofermentans based on analysis of motif enrichment.
DOI: 10.6084/m9.figshare.13545943.v1
title: Additional file 14 of Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria

description: Additional file 14: Table S10. List of motifs with significant E-value discovered based on upstream regions of upregulated genes in P. oligofermentans.
DOI: 10.6084/m9.figshare.13545985.v1
title: Additional file 8 of Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria

description: Additional file 8: Table S5. List of gene clusters based on gene network inference analysis in Le. gelidum, Lc. piscium, and P. oligofermentans.
DOI: 10.6084/m9.figshare.13545985
title: Additional file 8 of Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria

description: Additional file 8: Table S5. List of gene clusters based on gene network inference analysis in Le. gelidum, Lc. piscium, and P. oligofermentans.
DOI: 10.6084/m9.figshare.13545934
title: Additional file 11 of Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria

description: Additional file 11: Table S7. List of genes with a CspA binding site motif in their upstream regions in Le. gelidum, Lc. piscium, and P. oligofermentans.
DOI: 10.6084/m9.figshare.13545967.v1
title: Additional file 2 of Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria

description: Additional file 2: Table S1. List of differentially expressed genes in Le. gelidum.
DOI: 10.6084/m9.figshare.13545943
title: Additional file 14 of Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria

description: Additional file 14: Table S10. List of motifs with significant E-value discovered based on upstream regions of upregulated genes in P. oligofermentans.
DOI: 10.6084/m9.figshare.13545973
title: Additional file 4 of Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria

description: Additional file 4: Table S3. List of differentially expressed genes in P. oligofermentans.
DOI: 10.6084/m9.figshare.13567343.v1
title: HFDPC_K4DT_HFDPC_K4DT_AR

description: immortalized parent human dermal papilla cell with mutant CDK4, cyclin D1, TERT and offspring AR expressing cells
DOI: 10.6084/m9.figshare.13567343
title: HFDPC_K4DT_HFDPC_K4DT_AR

description: immortalized parent human dermal papilla cell with mutant CDK4, cyclin D1, TERT and offspring AR expressing cells
DOI: 10.6084/m9.figshare.13546550
title: Additional file 2 of Nutrient-imbalanced conditions shift the interplay between zooplankton and gut microbiota

description: Additional file 2: Table S5.
DOI: 10.6084/m9.figshare.13560087
title: Additional file 1 of Bruchid beetle ovipositioning mediated defense responses in black gram pods

description: Additional file 1: Table S1: KEGG pathway annotation of 4322 CDSs of IC-8219 cultivar and 3551 CDSs of T-9 cultivar.
DOI: 10.6084/m9.figshare.13560093.v1
title: Additional file 3 of Bruchid beetle ovipositioning mediated defense responses in black gram pods

description: Additional file 3: Table S3: 630 DEGs in IC-8219 cultivar and 184 DEGs in T-9 cultivar
DOI: 10.6084/m9.figshare.13560096
title: Additional file 4 of Bruchid beetle ovipositioning mediated defense responses in black gram pods

description: Additional file 4: Table S4: Significantly enriched GO terms of IC-8219 and T-9 cultivar
DOI: 10.6084/m9.figshare.13546550.v1
title: Additional file 2 of Nutrient-imbalanced conditions shift the interplay between zooplankton and gut microbiota

description: Additional file 2: Table S5.
DOI: 10.6084/m9.figshare.13560087.v1
title: Additional file 1 of Bruchid beetle ovipositioning mediated defense responses in black gram pods

description: Additional file 1: Table S1: KEGG pathway annotation of 4322 CDSs of IC-8219 cultivar and 3551 CDSs of T-9 cultivar.
DOI: 10.6084/m9.figshare.13560093
title: Additional file 3 of Bruchid beetle ovipositioning mediated defense responses in black gram pods

description: Additional file 3: Table S3: 630 DEGs in IC-8219 cultivar and 184 DEGs in T-9 cultivar
DOI: 10.6084/m9.figshare.13560084.v1
title: Additional file 10 of Bruchid beetle ovipositioning mediated defense responses in black gram pods

description: Additional file 10: Table S10: List of qPCR primers used for validation of transcriptome data
DOI: 10.6084/m9.figshare.13560090
title: Additional file 2 of Bruchid beetle ovipositioning mediated defense responses in black gram pods

description: Additional file 2: Table S2: Total number of CDSs of IC-8219 (C), IC-8219 (T), T-9 (C), and T-9 (T) samples under 23 identified KEGG pathway
DOI: 10.6084/m9.figshare.13560090.v1
title: Additional file 2 of Bruchid beetle ovipositioning mediated defense responses in black gram pods

description: Additional file 2: Table S2: Total number of CDSs of IC-8219 (C), IC-8219 (T), T-9 (C), and T-9 (T) samples under 23 identified KEGG pathway
DOI: 10.6084/m9.figshare.13560096.v1
title: Additional file 4 of Bruchid beetle ovipositioning mediated defense responses in black gram pods

description: Additional file 4: Table S4: Significantly enriched GO terms of IC-8219 and T-9 cultivar
DOI: 10.6084/m9.figshare.13560084
title: Additional file 10 of Bruchid beetle ovipositioning mediated defense responses in black gram pods

description: Additional file 10: Table S10: List of qPCR primers used for validation of transcriptome data
DOI: 10.6084/m9.figshare.13560102.v1
title: Additional file 6 of Bruchid beetle ovipositioning mediated defense responses in black gram pods

description: Additional file 6: Table S6: List of DEGs in the T-9 and IC-8219 cultivars under a different category
DOI: 10.6084/m9.figshare.13560099
title: Additional file 5 of Bruchid beetle ovipositioning mediated defense responses in black gram pods

description: Additional file 5: Table S5: Significantly enriched KEGG pathways in both IC-8219 and T-9 cultivars
DOI: 10.6084/m9.figshare.13560099.v1
title: Additional file 5 of Bruchid beetle ovipositioning mediated defense responses in black gram pods

description: Additional file 5: Table S5: Significantly enriched KEGG pathways in both IC-8219 and T-9 cultivars
DOI: 10.6084/m9.figshare.13560102
title: Additional file 6 of Bruchid beetle ovipositioning mediated defense responses in black gram pods

description: Additional file 6: Table S6: List of DEGs in the T-9 and IC-8219 cultivars under a different category
DOI: 10.6084/m9.figshare.13560111.v1
title: Additional file 9 of Bruchid beetle ovipositioning mediated defense responses in black gram pods

description: Additional file 9: Table S9: 2 down-regulated primary metabolic genes in the T-9 cultivar in response bruchid oviposition
DOI: 10.6084/m9.figshare.13560105
title: Additional file 7 of Bruchid beetle ovipositioning mediated defense responses in black gram pods

description: Additional file 7: Table S7: 29 down-regulated genes of a primary metabolic pathway in the IC-8219 cultivar in response to bruchid oviposition
DOI: 10.6084/m9.figshare.13560105.v1
title: Additional file 7 of Bruchid beetle ovipositioning mediated defense responses in black gram pods

description: Additional file 7: Table S7: 29 down-regulated genes of a primary metabolic pathway in the IC-8219 cultivar in response to bruchid oviposition
DOI: 10.6084/m9.figshare.13560108.v1
title: Additional file 8 of Bruchid beetle ovipositioning mediated defense responses in black gram pods

description: Additional file 8:. Table S8: 16 down-regulated genes of lipid metabolic pathway in the IC-8219 cultivar in response to bruchid oviposition
DOI: 10.6084/m9.figshare.13560111
title: Additional file 9 of Bruchid beetle ovipositioning mediated defense responses in black gram pods

description: Additional file 9: Table S9: 2 down-regulated primary metabolic genes in the T-9 cultivar in response bruchid oviposition
DOI: 10.6084/m9.figshare.13560108
title: Additional file 8 of Bruchid beetle ovipositioning mediated defense responses in black gram pods

description: Additional file 8:. Table S8: 16 down-regulated genes of lipid metabolic pathway in the IC-8219 cultivar in response to bruchid oviposition
DOI: 10.13145/bacdive10459.20191129.4.1
title: Formivibrio citricus Tanaka et al. 1991

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10460.20191129.4.1
title: Iodobacter fluviatilis (Moss et al. 1981) Logan 1989

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10461.20191129.4.1
title: Kingella kingae (Henriksen and Bøvre 1968) Henriksen and Bøvre 1976

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10462.20191129.4.1
title: Kingella denitrificans Snell and Lapage 1976

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10463.20191129.4.1
title: Kingella oralis Dewhirst et al. 1993

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10464.20191129.4.1
title: Kingella potus Lawson et al. 2005

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10465.20191129.4.1
title: Laribacter hongkongensis Yuen et al. 2002

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10466.20191129.4.1
title: Neisseria cinerea (von Lingelsheim 1906) Murray 1939

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10467.20191129.4.1
title: Neisseria lactamica Hollis et al. 1969

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10468.20191129.4.1
title: Neisseria sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10469.20191129.4.1
title: Neisseria mucosa Véron et al. 1959

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10470.20191129.4.1
title: Neisseria gonorrhoeae (Zopf 1885) Trevisan 1885

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10471.20191129.4.1
title: Neisseria gonorrhoeae (Zopf 1885) Trevisan 1885

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10472.20191129.4.1
title: Neisseria gonorrhoeae (Zopf 1885) Trevisan 1885

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10473.20191129.4.1
title: Neisseria meningitidis (Albrecht and Ghon 1901) Murray 1929

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10474.20191129.4.1
title: Neisseria meningitidis (Albrecht and Ghon 1901) Murray 1929

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10475.20191129.4.1
title: Neisseria meningitidis (Albrecht and Ghon 1901) Murray 1929

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10476.20191129.4.1
title: Neisseria meningitidis (Albrecht and Ghon 1901) Murray 1929

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10477.20191129.4.1
title: Neisseria meningitidis (Albrecht and Ghon 1901) Murray 1929

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10478.20191129.4.1
title: Neisseria subflava (Flügge 1886) Trevisan 1889

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10479.20191129.4.1
title: Neisseria elongata subsp. nitroreducens Grant et al. 1991

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10480.20191129.4.1
title: Neisseria flavescens Branham 1930

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10481.20191129.4.1
title: Neisseria weaveri Holmes et al. 1993 emend. Yi and Chun 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10482.20191129.4.1
title: Neisseria elongata Bøvre and Holten 1970

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10483.20191129.4.1
title: Neisseria sicca (von Lingelsheim 1908) Bergey et al. 1923

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10484.20191129.4.1
title: Neisseria sicca (von Lingelsheim 1908) Bergey et al. 1923

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10485.20191129.4.1
title: Neisseria canis Berger 1962

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10486.20191129.4.1
title: Neisseria perflava Bergey et al. 1923

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10487.20191129.4.1
title: Neisseria animalis Berger 1960

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10488.20191129.4.1
title: Neisseria elongata subsp. glycolytica Henriksen and Holten 1976

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10489.20191129.4.1
title: Neisseria macacae Vedros et al. 1983

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10490.20191129.4.1
title: Neisseria polysaccharea Riou and Guibourdenche 1987

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10491.20191129.4.1
title: Neisseria dentiae Sneath and Barrett 1997

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10492.20191129.4.1
title: Neisseria bacilliformis Han et al. 2006

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10493.20191129.4.1
title: Neisseria animaloris Vandamme et al. 2006

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10494.20191129.4.1
title: Neisseria zoodegmatis Vandamme et al. 2006

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10495.20191129.4.1
title: Neisseria shayeganii Wolfgang et al. 2011

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10496.20191129.4.1
title: Neisseria shayeganii Wolfgang et al. 2011

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10497.20191129.4.1
title: Neisseria wadsworthii Wolfgang et al. 2011

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10498.20191129.4.1
title: Neisseria wadsworthii Wolfgang et al. 2011

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10499.20191129.4.1
title: Andreprevotia chitinilytica Weon et al. 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10500.20191129.4.1
title: Andreprevotia lacus Sheu et al. 2009

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10501.20191129.4.1
title: Silvimonas terrae Yang et al. 2005

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.