cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5878/001737
title: Institutional Trust 2007
title: Förtroendebarometer 2007

description: Since 1997, MedieAkademin has carried out an annual survey titled The Institutional Trust. The survey has focused on major social institutions, such as the parliament, big business, the daily press, and TV/radio, as well as some specific companies such as Sveriges Television, TV4, IKEA, Skandia, and Volvo. The number of institutions included has varied somewhat over the years. Some of the institutions and companies have been measured every year while others have been investigated more irregularly.

The survey was carried out by TNS Gallup and involved 250 individuals who were interviewed by telephone and 750 individuals randomly selected from TNS Gallup’s Online Panel who answered a web survey between October 15 and 29, 2007. The survey comprised 27 institutions/companies/media companies and political parties. The 2007 survey also included questions about morality in different groups of people and how it has changed over time, as well as what responsibilities large corporations have and to what extent they live up to these responsibilities.

Purpose:

To study the trust that Swedish people have in social institutions, political parties, media, brands/companies, and leaders.
description: MedieAkademins förtroendebarometer har genomförts årligen sedan 1997. Undersökningen har varje år dels avsett ett urval viktiga samhällsinstitutioner som exempelvis riksdagen, storföretagen, dagspressen och radio-TV, dels ett antal konkreta medier, bl.a Sveriges Television och TV4, och specifika företag, som t ex IKEA, Skandia och Volvo. Antalet bedömda institutioner har varierat något mellan enskilda år. Vissa av institutionerna/medierna/företagen har mätts varje år, andra har studerats mer oregelbundet.

Undersökningen 2007 omfattade 250 personer intervjuade via telefon och 750 personer slumpvis utvalda från TNS Gallups On Line Panel som besvarat en nätenkät. Studien genomfördes 15/10 - 29/10 2007. Undersökningarna har genomförts av TNS Gallup i Göteborg och innefattade 27 institutioner/företag/medier/partier. I 2007 års undersökning ingick även frågor om olika gruppers moral och hur den har förändrats liksom frågor om storföretagens ansvar och hur de lever upp till dem.

Syfte:

Studera svenska folkets förtroende till samhällsinstitutioner, politiska partier, medier, varumärken/företag och ledare.
DOI: 10.5878/002116
title: Institutional Trust 2007 - telephone interviews
title: Förtroendebarometer 2007 - telefonintervju

description: Since 1997, MedieAkademin has carried out an annual survey titled The Institutional Trust. The survey has focused on major social institutions, such as the parliament, big business, the daily press, and TV/radio, as well as some specific companies such as Sveriges Television, TV4, IKEA, Skandia, and Volvo. The number of institutions included has varied somewhat over the years. Some of the institutions and companies have been measured every year while others have been investigated more irregularly.

The survey was carried out by TNS Gallup and involved 250 individuals who were interviewed by telephone and 750 individuals randomly selected from TNS Gallup’s Online Panel who answered a web survey between October 15 and 29, 2007. The survey comprised 27 institutions/companies/media companies and political parties. The 2007 survey also included questions about morality in different groups of people and how it has changed over time, as well as what responsibilities large corporations have and to what extent they live up to these responsibilities.

Purpose:

To study the trust that Swedish people have in social institutions, political parties, media, brands/companies, and leaders.
description: MedieAkademins förtroendebarometer har genomförts årligen sedan 1997. Undersökningen har varje år dels avsett ett urval viktiga samhällsinstitutioner som exempelvis riksdagen, storföretagen, dagspressen och radio-TV, dels ett antal konkreta medier, bl.a Sveriges Television och TV4, och specifika företag, som t ex IKEA, Skandia och Volvo. Antalet bedömda institutioner har varierat något mellan enskilda år. Vissa av institutionerna/medierna/företagen har mätts varje år, andra har studerats mer oregelbundet.

Undersökningen 2007 omfattade 250 personer intervjuade via telefon och 750 personer slumpvis utvalda från TNS Gallups On Line Panel som besvarat en nätenkät. Studien genomfördes 15/10 - 29/10 2007. Undersökningarna har genomförts av TNS Gallup i Göteborg och innefattade 27 institutioner/företag/medier/partier. I 2007 års undersökning ingick även frågor om olika gruppers moral och hur den har förändrats liksom frågor om storföretagens ansvar och hur de lever upp till dem.

Syfte:

Studera svenska folkets förtroende till samhällsinstitutioner, politiska partier, medier, varumärken/företag och ledare.
DOI: 10.6084/m9.figshare.29401835
title: A selection-based knockout method for a choanoflagellate reveals regulation of multicellular development by Hippo signaling

description: This dataset contains all intermediate results, analysis reports and figures made for the RNA-seq analysis of the paper <i>A selection-based knockout method for a choanoflagellate reveals regulation of multicellular development by Hippo signaling</i>.RNA sequencing data were analyzed using Sequana rnadiff and SARTools pipeline. Raw sequencing data (fastq and BAM files) are available in SRA: PRJNA1285803 (https://www.ncbi.nlm.nih.gov/search/all/?term=PRJNA1285803).All R scripts and further information concerning the overall analysis can be found in the associated GitHub: https://github.com/MylanAnsel/RNAseq-analyses-of-S.rosetta-mutants-for-Hippo-pathway<br>
DOI: 10.6084/m9.figshare.29401835.v1
title: A selection-based knockout method for a choanoflagellate reveals regulation of multicellular development by Hippo signaling

description: This dataset contains all intermediate results, analysis reports and figures made for the RNA-seq analysis of the paper <i>A selection-based knockout method for a choanoflagellate reveals regulation of multicellular development by Hippo signaling</i>.RNA sequencing data were analyzed using Sequana rnadiff and SARTools pipeline. Raw sequencing data (fastq and BAM files) are available in SRA: PRJNA1285803 (https://www.ncbi.nlm.nih.gov/search/all/?term=PRJNA1285803).All R scripts and further information concerning the overall analysis can be found in the associated GitHub: https://github.com/MylanAnsel/RNAseq-analyses-of-S.rosetta-mutants-for-Hippo-pathway<br>
DOI: 10.22002/6tecx-x3s12
title: Hpylori_dFliF_FISE

description: These are H_pylori cells that are lacking FliP protein. In these cells, FliF protein was knocked out  .  to examine its relation to the hat-like complex.
description: <strong>Tilt Series Date:</strong> 2020-10-08</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Helicobacter pylori</p>
<strong>Strain:</strong> 26695</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -8.0 μm,  magnification: 19500x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> The cells were prepared and sent by Carrie Schaffer from the university of Kentucky. The cells were grown at 37C with 5% CO2 on sheep blood agar plates for 2 days from a -80C. No growth was seen . on the plates after 24 hr therefore the plates were kept in the . incubator for another 24Hr.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The samples were prepared with Vitrobot IV. Blotting conditions were either: blot force 6, blot . time 3, drain time 1 OR blot force -3, blot time 4, drain time 1, 100%  humidity. Cu grids. 10 nm . gold</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-10-08-454/rawdata/</p>Hpylori_DFliF_FISE_459.mrc,  Tilt Series (Pixel Size 0.452 nm), 1.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-10-08-454/rawdata/Hpylori_DFliF_FISE_459.mrc"
        > <i class="download icon"></i> Download </a></p>

        Hpylori_DFliF_FISE_459_full.rec,  Reconstruction (Pixel Size 1.808 nm), 737.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-10-08-454/3dimage_114348/Hpylori_DFliF_FISE_459_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/k3jpx-fk944
title: JV9082_Janelia42k

description: DotF-sfGFP fusion
description: <strong>Tilt Series Date:</strong> 2018-08-29</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-54.0°, 54.0°), step: 3.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -7.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Joseph P. Vogel, Washington University School of Medicine. Data collected and processed by Debnath Ghosal. Janelia Krios.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in AYE liquid culture with following supplements: ferric nitrate, cysteine hydrochloride and thymidine.</p>
<strong>Sample Preparation:</strong> 6 grids were frozen for the JV9082 strain (2x concentrated culture); Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 4.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-29-29/rawdata/</p>JV9082_201808290015.mrc,  Tilt Series (Pixel Size 0.26 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-29-29/rawdata/JV9082_201808290015.mrc"
        > <i class="download icon"></i> Download </a></p>

        JV9082_201808290015_full.rec,  Reconstruction (Pixel Size 1.04 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-29-29/3dimage_96370/JV9082_201808290015_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/7n41z-9z249
title: JV9082_Janelia42k

description: DotF-sfGFP fusion
description: <strong>Tilt Series Date:</strong> 2018-08-29</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-54.0°, 54.0°), step: 3.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -7.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Joseph P. Vogel, Washington University School of Medicine. Data collected and processed by Debnath Ghosal. Janelia Krios.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in AYE liquid culture with following supplements: ferric nitrate, cysteine hydrochloride and thymidine.</p>
<strong>Sample Preparation:</strong> 6 grids were frozen for the JV9082 strain (2x concentrated culture); Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 4.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-29-212/rawdata/</p>JV9082_201808290212.mrc,  Tilt Series (Pixel Size 0.26 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-29-212/rawdata/JV9082_201808290212.mrc"
        > <i class="download icon"></i> Download </a></p>

        JV9082_201808290212_full.rec,  Reconstruction (Pixel Size 1.04 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-29-212/3dimage_96819/JV9082_201808290212_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/6zn3e-5wv05
title: BacillusSubtilis_328_4hr

description: Bacillus subtitles strain 328 overexpressing ymdB.
description: <strong>Tilt Series Date:</strong> 2020-02-26</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Bacillus subtilis</p>
<strong>Strain:</strong> AB328, ΔponA ΔymdB amyE::ymdB Δhag</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 19500x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Samples were prepared with Ritesh and Amit from Ilan Rosenshine and Sigal ben Yehuda labs at . the Hebrew university. See tomograms mka2020-02-08-x.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Samples were prepared as mentioned in Bacillus subtitles tomograms taken on 8th of February . 2020.</p>
<strong>Sample Preparation:</strong> Samples were prepared as mentioned in Bacillus subtitles tomograms taken on 8th of February . 2020. See tomograms mka2020-02-08-x.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-02-26-77/rawdata/</p>Bsubtilis_328_077.mrc,  Tilt Series (Pixel Size 0.449 nm), 1.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-02-26-77/rawdata/Bsubtilis_328_077.mrc"
        > <i class="download icon"></i> Download </a></p>

        Bsubtilis_328_077_full.rec,  Reconstruction (Pixel Size 1.796 nm), 737.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-02-26-77/3dimage_111884/Bsubtilis_328_077_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.2ymxby
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Baileychromis centropomoides, Barboides gracilis, Barbopsis devecchii, Barbus hondeensis, Enteromius manicensis, Barbus kamaia, Enteromius motebensis, Barbus microbarbis, Labeobarbus microbarbis, Barbus microterolepis, Labeobarbus microterolepis, Barbus myersi, Enteromius radiatus, Barbus paucisquamatus, Labeobarbus paucisquamatus, Barbus tetraspilus, Barilius shariensis, Raiamas shariensis, Bathyaethiops breuseghemi, Bathyaethiops caudomaculatus, Bathyaethiops greeni, Bathybagrus grandis, Bathybagrus graueri, Bathybagrus platycephalus, Bathybagrus sianenna, Bathybagrus stappersii, Bathybagrus tetranema, Bathybates fasciatus, Bathybates ferox, Bathybates graueri, Bathybates hornii, Bathybates leo, Bathybates minor, Bathybates vittatus, Bathyclarias atribranchus, Bathyclarias euryodon, Bathyclarias filicibarbis, Bathyclarias foveolatus, Bathyclarias longibarbis, Bathyclarias nyasensis, Bathyclarias rotundifrons, Bathyclarias worthingtoni, Bathygobius casamancus, Bathygobius fuscus, Bathygobius petrophilus, Bathygobius samberanoensis, Bathygobius soporator, Bedotia albomarginata, Bedotia alveyi, Bedotia geayi, Bedotia leucopteron, Bedotia longianalis, Bedotia madagascariensis, Bedotia marojejy, Bedotia masoala, Bedotia tricolor, Belonoglanis brieni, Belonoglanis tenuis, Belonophago hutsebouti, Belonophago tinanti, Benitochromis batesii, Benitochromis conjunctus, Benitochromis finleyi, Benitochromis nigrodorsalis, Benitochromis riomuniensis, Benitochromis ufermanni, Benthochromis melanoides, Benthochromis tricoti, Boleophthalmus boddarti, Bostrychus africanus, Boulengerochromis microlepis, Boulengeromyrus knoepffleri, Brachyalestes bimaculatus, Brachyalestes carolinae, Brachyalestes comptus, Brachyalestes fwaensis, Brachyalestes imberi, Brycinus imberi, Brachyalestes jacksonii, Brachyalestes kingsleyae, Brachyalestes nurse, Brachypetersius altus, Brachypetersius cadwaladeri, Brachypetersius gabonensis, Brachypetersius huloti, Brachypetersius pseudonummifer, Brevimyrus niger, Brienomyrus brachyistius)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((14.0551 -24.7971,14.1824 -24.9401,19.1382 -24.9401,19.1382 -15.9401,11.232 -15.9401,11.1685 -16.5532,11.3443 -18.2026,12.161 -19.3946,13.5014 -21.9972,13.9613 -22.5582,13.9546 -24.0815,14.0551 -24.7971))"
 ]
}

 The dataset includes 19 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006042-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/nd269-51s77
title: JV9082_K3_janelia

description: JV9082:DotF-sfGFP fusion
description: <strong>Tilt Series Date:</strong> 2019-12-02</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-54.0°, 54.0°), step: 3.0°, constant angular increment, dosage: 90.0 eV/Å²,  defocus: -2.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Joseph P. Vogel, Washington University School of Medicine. Data collected and processed by Debnath Ghosal.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in AYE liquid culture with following supplements: ferric nitrate, cysteine hydrochloride and thymidine.</p>
<strong>Sample Preparation:</strong> Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 4.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Data collected at Janelia Krios (K3 camera). Mag: 26000, pixel size: 2.61A. Defocus range -2 to -4 um.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-12-02-93/rawdata/</p>9082_Box1_No1_S83.mrc,  Tilt Series (Pixel Size 0.261 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-12-02-93/rawdata/9082_Box1_No1_S83.mrc"
        > <i class="download icon"></i> Download </a></p>

        9082_Box1_No1_S83_full.rec,  Reconstruction (Pixel Size 1.044 nm), 737.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-12-02-93/3dimage_112632/9082_Box1_No1_S83_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/e2bj5-r2a47
title: Exp phase S. acidocaldarius

description: Grid box 85 - grid1. Located dividing cells using projection images in a previous TEM session.
description: <strong>Tilt Series Date:</strong> 2018-02-04</p>
<strong>Data Taken By:</strong> Shrawan kumar Mageswaran</p>
<strong>Species / Specimen:</strong> Sulfolobus acidocaldarius</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -10.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD for backprojection, tomo3d for SIRT</p>
<strong>Collaborators and Roles:</strong> Megan Dobro's stock of cells</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were harvested at 0.1 OD and kept at 4 C for further steps until freezing. Spun cells at 6000 xg for 3 min to concentrated cells to ~1 OD.</p>
<strong>Sample Preparation:</strong> Cu finder grids - glow discharged. Coated with 4 µL of 10 nm Au beads resuspended in 0.01 % BSA (7 µL of 10 nm Au + 93 µL of 0.01 % BSA) and dried. Added 3.5 µL of suspension and blotted for 2-3 sec from behind manually.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2018-02-04-7/rawdata/</p>TS7_408.mrc,  Tilt Series (Pixel Size 0.541 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2018-02-04-7/rawdata/TS7_408.mrc"
        > <i class="download icon"></i> Download </a></p>

        TS7_4bin_SIRT_rotx.rec,  Reconstruction (Pixel Size 0.0 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2018-02-04-7/3dimage_102310/TS7_4bin_SIRT_rotx.rec"
        > <i class="download icon"></i> Download </a></p>