cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29447083.v1
title: LASSO-based Survival Prediction Modelling with Multiply Imputed Data: A Case Study in Tuberculosis Mortality Prediction

description: Utilizing health administrative datasets for developing prediction models is always challenging due to missing values in key predictors. Multiple imputation has been recommended to deal with missing predictor values. However, predicting survival outcomes using regularized regression, e.g., Cox-LASSO, faces limitations as these methods are incompatible with pooling model outputs from multiple imputed data using Rubin’s rule. In this study, we explored the performance of three statistical methods in developing prediction models with Cox-LASSO on multiply imputed data: prediction average, performance average, and stacked. We considered two hyperparameter selection techniques: minimum-lambda that gives the minimum cross-validated prediction error and 1SE-lambda that selects more parsimonious models. We also conducted plasmode simulations with varying the events per parameter. The stacked approach provided the most robust predictions in our case study of predicting tuberculosis mortality and simulations, producing a time-dependent c-statistic of 0.93 and a well-calibrated calibration plot. The 1SE-lambda technique resulted in underfitting of the models in most scenarios, both in case study and simulation. Our findings advocate the stacked method with minimum-lambda as an effective technique for combining LASSO-based prediction outputs from multiply imputed data. We shared reproducible R codes for future researchers to facilitate the adoption of these methodologies in their research.
DOI: 10.15468/dl.yjphkv
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argemone mexicana",
 "Country is Sierra Leone",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010027-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16737831
title: 3D RTI and 3D KHRTI
DOI: 10.5281/zenodo.16737832
title: 3D RTI and 3D KHRTI
DOI: 10.15468/dl.cnajpb
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Silene aucheriana",
 "Geometry POLYGON ((26.04335 1.226334, 135.0263 1.226334, 135.0263 55.38525, 26.04335 55.38525, 26.04335 1.226334))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 25 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010029-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kzgqyx
title: Occurrence Download

description: A dataset containing 16799 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((4.109118660561522 43.5538997718163, 4.109118660561522 43.59016156647035, 4.034440962331202 43.59016156647035, 4.034440962331202 43.5538997718163, 4.109118660561522 43.5538997718163))",
 "EventDate is 2014-12-31,2024-12-31"
 ]
}

 The dataset includes 16799 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010028-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pzpgcu
title: Occurrence Download

description: A dataset containing 835 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Italy",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lanius senator",
 "Year 1970-2020"
 ]
}

 The dataset includes 835 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010031-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m4d8uj
title: Occurrence Download

description: A dataset containing 991 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plestiodon japonicus",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 991 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010030-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ka7wf8
title: Occurrence Download

description: A dataset containing 22506610 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 PRINTF('%04d-%02d', "year", "month") yearmonth,
 GBIF_EEARGCODE(10000, decimallatitude, decimallongitude, COALESCE(coordinateuncertaintyinmeters, 1000)) eeacellcode,
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, GBIF_EEARGCODE(10000, decimallatitude, decimallongitude, COALESCE(coordinateuncertaintyinmeters, 1000)), PRINTF('%04d-%02d', "year", "month"))) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, GBIF_EEARGCODE(10000, decimallatitude, decimallongitude, COALESCE(coordinateuncertaintyinmeters, 1000)), PRINTF('%04d-%02d', "year", "month"))) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, GBIF_EEARGCODE(10000, decimallatitude, decimallongitude, COALESCE(coordinateuncertaintyinmeters, 1000)), PRINTF('%04d-%02d', "year", "month"))) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, GBIF_EEARGCODE(10000, decimallatitude, decimallongitude, COALESCE(coordinateuncertaintyinmeters, 1000)), PRINTF('%04d-%02d', "year", "month"))) ordercount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.countrycode = 'SE'
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.familykey IS NOT NULL AND occurrence."year" IS NOT NULL AND occurrence."month" IS NOT NULL AND occurrence.hascoordinate = TRUE)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 PRINTF('%04d-%02d', "year", "month"),
 GBIF_EEARGCODE(10000, decimallatitude, decimallongitude, COALESCE(coordinateuncertaintyinmeters, 1000))

 The dataset's 22506610 records were derived from 995 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010009-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/olw8pa
title: accessibilite_IDN_CNIG.gpkg

description: Original dataset in geospatial format
DOI: 10.57745/efkihn
title: Données « Accessibilité » de l'Île de Nantes

description: Ce jeu de données est un extrait des données de la métropole de Nantes, au format défini par le standard « Accessibilité » du Conseil national de l'information géographique. Destiné à des expérimentations dans le cadre du LabCom Inmob, il ne couvre que le périmètre de l'Île de Nantes. Il est constitué du fichier accessibilite_IDN_CNIG.gpkg qui contient 7 couches : bridge.adm_quartier_s(1 entité) escalier (29 entités) stationnement_pmr (62 entités) traversee (383 entités) noeud_cheminement (1058 entités) obstacle (1788 entités) troncon_cheminement (1795 entités)
DOI: 10.57745/o4wuvs
title: Readme_EFKIHN_2025.md

description: README file with dataset description
DOI: 10.15468/dl.t65q8p
title: Occurrence Download

description: A dataset containing 2913 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phrynium"
 ]
}

 The dataset includes 2913 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010032-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16738335
title: PreLiverT
DOI: 10.5281/zenodo.16738336
title: PreLiverT
DOI: 10.15468/dl.ryw9y3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Nanochromis minor)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010034-250802193616735/datasets/export for details.
DOI: 10.15468/dl.ssxcvz
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAV7998"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010033-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qhcs22
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Costa Rica",
 "TaxonKey is Inga laurina"
 ]
}

 The dataset includes 47 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010035-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cp9uar
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argemone mexicana",
 "Country is Somalia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010036-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16658429
title: Apêndice1

description: Apêndice associado ao Relatório Técnico: Análise de risco e gestão da biodiversidade pela supressão de ecossistemas de cangas na Serra Norte, Carajás, PA. IP.100.2025. Belo Horizonte, 31 de julho de 2025.
DOI: 10.5281/zenodo.16658430
title: Apêndice1

description: Apêndice associado ao Relatório Técnico: Análise de risco e gestão da biodiversidade pela supressão de ecossistemas de cangas na Serra Norte, Carajás, PA. IP.100.2025. Belo Horizonte, 31 de julho de 2025.
DOI: 10.15468/dl.jvt6uq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Polioptila melanura)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010037-250802193616735/datasets/export for details.
DOI: 10.15468/dl.znnwsf
title: Occurrence Download

description: A dataset containing 216 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argemone mexicana",
 "Country is Spain",
 "HasCoordinate is true"
 ]
}

 The dataset includes 216 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010039-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d3rehe
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Polioptila melanura)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010038-250802193616735/datasets/export for details.
DOI: 10.15468/dl.fzfgae
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Protobothrops elegans",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 108 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010041-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ntcfk3
title: Occurrence Download

description: A dataset containing 762671 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rumex acetosa",
 "Year 1981-2020"
 ]
}

 The dataset includes 762671 records from 2533 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010004-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30364189
title: <b>Study on the suitable area of ratoon rice in China under climate change</b>

description: Ratoon rice is a special cultivation system developed based on the regenerative capacity of rice axillary buds. Its core mechanism lies in regulating the regeneration potential of stubble axillary buds through agronomic practices. After harvesting the main-season rice, dormant buds are induced to sprout and form secondary tillers, which eventually develop into effective panicles, thereby achieving “one planting with two harvests.” In this study, 167 occurrence records of ratoon rice, nine environmental variables, and three future climate scenarios proposed in CMIP6 (SSP1-2.6, SSP2-4.5, and SSP5-8.5) were used to predict the suitable cultivation area of ratoon rice in China using the MaxEnt model.
DOI: 10.6084/m9.figshare.30364189.v1
title: <b>Study on the suitable area of ratoon rice in China under climate change</b>

description: Ratoon rice is a special cultivation system developed based on the regenerative capacity of rice axillary buds. Its core mechanism lies in regulating the regeneration potential of stubble axillary buds through agronomic practices. After harvesting the main-season rice, dormant buds are induced to sprout and form secondary tillers, which eventually develop into effective panicles, thereby achieving “one planting with two harvests.” In this study, 167 occurrence records of ratoon rice, nine environmental variables, and three future climate scenarios proposed in CMIP6 (SSP1-2.6, SSP2-4.5, and SSP5-8.5) were used to predict the suitable cultivation area of ratoon rice in China using the MaxEnt model.
DOI: 10.5517/cc9dldn
title: CCDC 280221: Experimental Crystal Structure Determination

description: Related Article: A.Dey, M.T.Kirchner, V.R.Vangala, G.R.Desiraju, R.Mondal, J.A.K.Howard|2005|J.Am.Chem.Soc.|127|10545|doi:10.1021/ja042738c
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc9dlfp
title: CCDC 280222: Experimental Crystal Structure Determination

description: Related Article: A.Dey, M.T.Kirchner, V.R.Vangala, G.R.Desiraju, R.Mondal, J.A.K.Howard|2005|J.Am.Chem.Soc.|127|10545|doi:10.1021/ja042738c
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc9dlgq
title: CCDC 280223: Experimental Crystal Structure Determination

description: Related Article: A.Dey, M.T.Kirchner, V.R.Vangala, G.R.Desiraju, R.Mondal, J.A.K.Howard|2005|J.Am.Chem.Soc.|127|10545|doi:10.1021/ja042738c
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc9dlhr
title: CCDC 280224: Experimental Crystal Structure Determination

description: Related Article: A.Dey, M.T.Kirchner, V.R.Vangala, G.R.Desiraju, R.Mondal, J.A.K.Howard|2005|J.Am.Chem.Soc.|127|10545|doi:10.1021/ja042738c
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc9dljs
title: CCDC 280225: Experimental Crystal Structure Determination

description: Related Article: A.Dey, M.T.Kirchner, V.R.Vangala, G.R.Desiraju, R.Mondal, J.A.K.Howard|2005|J.Am.Chem.Soc.|127|10545|doi:10.1021/ja042738c
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc9dlkt
title: CCDC 280226: Experimental Crystal Structure Determination

description: Related Article: A.Dey, M.T.Kirchner, V.R.Vangala, G.R.Desiraju, R.Mondal, J.A.K.Howard|2005|J.Am.Chem.Soc.|127|10545|doi:10.1021/ja042738c
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc9dllv
title: CCDC 280227: Experimental Crystal Structure Determination

description: Related Article: A.Dey, M.T.Kirchner, V.R.Vangala, G.R.Desiraju, R.Mondal, J.A.K.Howard|2005|J.Am.Chem.Soc.|127|10545|doi:10.1021/ja042738c
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc9dlmw
title: CCDC 280228: Experimental Crystal Structure Determination

description: Related Article: A.Dey, M.T.Kirchner, V.R.Vangala, G.R.Desiraju, R.Mondal, J.A.K.Howard|2005|J.Am.Chem.Soc.|127|10545|doi:10.1021/ja042738c
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8868z
title: CCDC 246210: Experimental Crystal Structure Determination

description: Related Article: A.H.Ilkhechi, J.M.Mercero, I.Silanes, M.Bolte, M.Scheibitz, H.-W.Lerner, J.M.Ugalde, M.Wagner|2005|J.Am.Chem.Soc.|127|10656|doi:10.1021/ja051544+
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc886c2
title: CCDC 246213: Experimental Crystal Structure Determination

description: Related Article: A.H.Ilkhechi, J.M.Mercero, I.Silanes, M.Bolte, M.Scheibitz, H.-W.Lerner, J.M.Ugalde, M.Wagner|2005|J.Am.Chem.Soc.|127|10656|doi:10.1021/ja051544+
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.5f5b36
title: Occurrence Download

description: A dataset containing 34258 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Animal Sound Archive"
 ]
}

 The dataset includes 34258 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023282-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc88690
title: CCDC 246211: Experimental Crystal Structure Determination

description: Related Article: A.H.Ilkhechi, J.M.Mercero, I.Silanes, M.Bolte, M.Scheibitz, H.-W.Lerner, J.M.Ugalde, M.Wagner|2005|J.Am.Chem.Soc.|127|10656|doi:10.1021/ja051544+
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.