cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.60593/ur.d.27172986.v1
title: Using Virtual Reality to Study Spatial Mapping and Threat Learning

description: This data is from a virtual reality threat conditioning study comparing those that learned the contingencies of the paradigm (learners) and those who did not. Participants collected flowers in a virtual environment one at a time, and after collecting a flower, they rated on a scale (0-9) how likely they were to get a shock (9 being more likely). Unknown to participants, half of the environment predicted shock (at reinforcement rates 35%, 50%, and 60%), while the other half was "safe". Participants also collected and returned objects to their original location 4 times each. 2 objects were located in the "safe" half, two were located in the dangerous half. The distance between where the participant placed the object and it's original location was measured. State and trait anxiety scores were measured before (state and trait) and after (state only) the conditioning task. Participants also completed the Raven's Progressive Matrices before the task. During the task, skin conductance level was collected as participants approached a flower (SCL) and after they collected the flower and rated the likelihood of shock but before receiving a shock (SCR). At the end of the task, participants were asked to name the objects they collected and their locations. <br><b>Learner:</b> 1 - learner; 0 -non-learner<b>Reinforcement rate</b>: Shock reinforcement rate: 35%, 50%, 60%<b>Age:</b> Participant's age<b>Gender: </b>Participant's gender<b>STAI_State_Pre:</b> State Trait Anxiety Inventory score; State, before task<b>STAI_State_Post</b>: State Trait Anxiety Inventory score; State, after task<b>STAI_Trait</b>: State Trait Anxiety Inventory score; Trait<b>Raven</b>: Raven visual IQ score<b>Number_mem_obj</b>: Number of objects remembered<b>Number_mem_loc:</b> Number of object locations remembered<b>SCR_Safe_n:</b><b><strong> </strong></b>SCR (jitter period) for n'th safe trial; normalized and range-corrected<b>SCR_Dang_n: </b>SCR (jitter period) for n'th dangerous trial; normalized and range-corrected<b>SCL_Safe_n:</b> SCL (approaching flower) for n'th safe trial; normalized and range-corrected<b>SCL_Dang_n:</b> SCL (approaching flower) for n'th dangerous trial; normalized and range-corrected<b>Exp_Safe_n:</b> Shock expectation rating for n'th safe trial<b>Exp_Dang_n:</b> Shock expectation rating for n'th dangerous trial<b>Dist_n_k:</b> Distance of object n, iteration k<b>Condition</b> A - Dangerous objects: 1, 2; Safe objects: 3, 4; B - Dangerous objects: 3, 4; Safe objects: 1, 2;<br>
DOI: 10.17876/musewide/dr.1/18213
title: Object GUO_ID 18213 in candels-cdfs-40

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.
DOI: 10.60593/ur.d.27312471
title: Turkish Mothers Reasoning and Judgment around Autonomy

description: We surveyed 256 mostly well-educated mothers (<i>M</i> = 36.61 years, <i>SD</i> = 4.66) of 4- to 8-year-olds in Turkey about hypothetical and real-life personal, prudential, and conventional issues. In both contexts, Turkish mothers generally reported granting their children autonomy over personal issues while maintaining authority over prudential and conventional matters, based primarily on concerns about potential harm to the child or others. Higher SES mothers reported providing more autonomy, less control, and having less conflict with their child than lower SES mothers. Mothers reported little use of punitive strategies to resolve conflicts, but negotiation and persuasion were used predominantly by higher SES mothers. Boys were granted more decision-making autonomy than girls, and preschool girls were viewed as more attention-seeking than boys, a pattern that reversed at school age. Turkish mothers balanced granting autonomy and maintaining authority, with higher SES mothers more supportive of autonomy and negotiation in conflicts than lower SES mothers.
DOI: 10.60593/ur.d.27312471.v2
title: Turkish Mothers Reasoning and Judgment around Autonomy

description: We surveyed 256 mostly well-educated mothers (<i>M</i> = 36.61 years, <i>SD</i> = 4.66) of 4- to 8-year-olds in Turkey about hypothetical and real-life personal, prudential, and conventional issues. In both contexts, Turkish mothers generally reported granting their children autonomy over personal issues while maintaining authority over prudential and conventional matters, based primarily on concerns about potential harm to the child or others. Higher SES mothers reported providing more autonomy, less control, and having less conflict with their child than lower SES mothers. Mothers reported little use of punitive strategies to resolve conflicts, but negotiation and persuasion were used predominantly by higher SES mothers. Boys were granted more decision-making autonomy than girls, and preschool girls were viewed as more attention-seeking than boys, a pattern that reversed at school age. Turkish mothers balanced granting autonomy and maintaining authority, with higher SES mothers more supportive of autonomy and negotiation in conflicts than lower SES mothers.
DOI: 10.17876/musewide/dr.1/18214
title: Object GUO_ID 18214 in candels-cdfs-37

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.
DOI: 10.60593/ur.d.27312471.v1
title: Turkish Mothers Reasoning and Judgment around Autonomy

description: We surveyed 256 mostly well-educated mothers (<i>M</i> = 36.61 years, <i>SD</i> = 4.66) of 4- to 8-year-olds in Turkey about hypothetical and real-life personal, prudential, and conventional issues. In both contexts, Turkish mothers generally reported granting their children autonomy over personal issues while maintaining authority over prudential and conventional matters, based primarily on concerns about potential harm to the child or others. Higher SES mothers reported providing more autonomy, less control, and having less conflict with their child than lower SES mothers. Mothers reported little use of punitive strategies to resolve conflicts, but negotiation and persuasion were used predominantly by higher SES mothers. Boys were granted more decision-making autonomy than girls, and preschool girls were viewed as more attention-seeking than boys, a pattern that reversed at school age. Turkish mothers balanced granting autonomy and maintaining authority, with higher SES mothers more supportive of autonomy and negotiation in conflicts than lower SES mothers.
DOI: 10.60593/ur.d.27460125.v1
title: Data and R Code for SARS-CoV-2 vaccination study in the Dominican Republic manuscript.

description: The global COVID-19 pandemic has resulted in approximately 7 million deaths and a historic vaccination effort, with over 13.6 billion doses administered. Despite this, understanding of immune responses in vulnerable populations, such as transplant recipients (TR) and hemodialysis patients (HD), remains limited, especially outside the US and Europe. To address this gap, we analyzed blood samples and deidentified data from the Instituto Nacional de Coordinación de Trasplante (INCORT) in The Dominican Republic, measuring antibody levels to SARS-CoV-2 post-infection and vaccination -BNT162b2 (Pfizer-BioNTech) and Sinovac-CoronaVac (Sinovac)- in TR, HD, and healthy controls (CO). Using a fluorescent multiplex assay (mPlex-CoV) and mixed-effects modeling, we assessed variations in anti-S, anti-RBD, and anti-N IgG antibodies. Results indicate that the CO group experienced an early peak in anti-S and anti-RBD antibodies, followed by stabilization. In contrast, the TR and HD groups showed a slower, gradual increase in antibodies. Despite fluctuations in the HD group, both TR and HD maintained high anti-S and anti-RBD IgG levels, indicating a back-boosting effect from vaccination. However, elevated anti-N IgG levels in TR and HD suggest potential reinfections. Additionally, prior SARS-CoV-2 infection led to higher anti-S IgG levels, with BNT162b2 associated with higher anti-S IgG and CoronaVac with higher anti-N IgG levels. These findings highlight the variability in antibody responses and the need for targeted public health strategies to diverse immunological profiles.
DOI: 10.17876/musewide/dr.1/18219
title: Object GUO_ID 18219 in candels-cdfs-39

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.
DOI: 10.60593/ur.d.27460125
title: Data and R Code for SARS-CoV-2 vaccination study in the Dominican Republic manuscript.

description: The global COVID-19 pandemic has resulted in approximately 7 million deaths and a historic vaccination effort, with over 13.6 billion doses administered. Despite this, understanding of immune responses in vulnerable populations, such as transplant recipients (TR) and hemodialysis patients (HD), remains limited, especially outside the US and Europe. To address this gap, we analyzed blood samples and deidentified data from the Instituto Nacional de Coordinación de Trasplante (INCORT) in The Dominican Republic, measuring antibody levels to SARS-CoV-2 post-infection and vaccination -BNT162b2 (Pfizer-BioNTech) and Sinovac-CoronaVac (Sinovac)- in TR, HD, and healthy controls (CO). Using a fluorescent multiplex assay (mPlex-CoV) and mixed-effects modeling, we assessed variations in anti-S, anti-RBD, and anti-N IgG antibodies. Results indicate that the CO group experienced an early peak in anti-S and anti-RBD antibodies, followed by stabilization. In contrast, the TR and HD groups showed a slower, gradual increase in antibodies. Despite fluctuations in the HD group, both TR and HD maintained high anti-S and anti-RBD IgG levels, indicating a back-boosting effect from vaccination. However, elevated anti-N IgG levels in TR and HD suggest potential reinfections. Additionally, prior SARS-CoV-2 infection led to higher anti-S IgG levels, with BNT162b2 associated with higher anti-S IgG and CoronaVac with higher anti-N IgG levels. These findings highlight the variability in antibody responses and the need for targeted public health strategies to diverse immunological profiles.
DOI: 10.60593/ur.d.27867219
title: Hiram Sibley Family Correspondence

description: This dataset is an index of correspondence drawn from the Hiram Sibley family papers collection (D.81) which is held by the University of Rochester, River Campus Libraries, Rare Books, Special Collections, and Preservation department. The index contains an identifier for each piece of correspondence, who wrote the letter, who received the letter, and the date of the letter. The dataset was originally provided in Excel Spreadsheet format but also converted into a CSV file.
DOI: 10.60593/ur.d.27867219.v1
title: Hiram Sibley Family Correspondence

description: This dataset is an index of correspondence drawn from the Hiram Sibley family papers collection (D.81) which is held by the University of Rochester, River Campus Libraries, Rare Books, Special Collections, and Preservation department. The index contains an identifier for each piece of correspondence, who wrote the letter, who received the letter, and the date of the letter. The dataset was originally provided in Excel Spreadsheet format but also converted into a CSV file.
DOI: 10.17876/musewide/dr.1/18221
title: Object GUO_ID 18221 in candels-cdfs-37

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.
DOI: 10.60593/ur.d.27880665
title: Supplemental Materials for "Future Sequon Finder - A novel approach for predicting future N-linked glycosylation sequons on viral surface proteins"

description: Java Program PackagesfutureSequonFinder— This program as the main program used to predict the emergence of sequons, and is thoroughly described in the manuscript.ifvDataCleaner - This is the program used to filter the HA nucleotide sequence datasets that were used for site-specific mutation frequency analysis.MultipleSequonFinder - This program was used to determine when specific glycosylation sequons first emerged in the H1N1 swine dataset.Phylogenetic TreesThis folder contains the newick files encoding phylogenetic trees for the human H1N1 and H3N2 analysis strains referenced in the manuscript. The H1N1 swine tree contains all swine analysis strains and an additional ≤25 strains per year for context.Supplementary PDB FilesThis folder contains all PDB files generated by Alpha Fold for the related strains immediately preceding glycosylation events that Future Sequon Finder would analyze. The human H1N1, H3N2, and swine H1N1 structures are included here.Influenza_Analysis_SequencesThis Excel spreadsheet contains details for all influenza analysis strains (those strains that either directly precede a sequon addition event or have obtained a new sequon). Their names, nucleotide sequences, database, phylogenetic group, analysis group, and host species are all included.
DOI: 10.60593/ur.d.27880665.v1
title: Supplemental Materials for "Future Sequon Finder - A novel approach for predicting future N-linked glycosylation sequons on viral surface proteins"

description: Java Program PackagesfutureSequonFinder— This program as the main program used to predict the emergence of sequons, and is thoroughly described in the manuscript.ifvDataCleaner - This is the program used to filter the HA nucleotide sequence datasets that were used for site-specific mutation frequency analysis.MultipleSequonFinder - This program was used to determine when specific glycosylation sequons first emerged in the H1N1 swine dataset.Phylogenetic TreesThis folder contains the newick files encoding phylogenetic trees for the human H1N1 and H3N2 analysis strains referenced in the manuscript. The H1N1 swine tree contains all swine analysis strains and an additional ≤25 strains per year for context.Supplementary PDB FilesThis folder contains all PDB files generated by Alpha Fold for the related strains immediately preceding glycosylation events that Future Sequon Finder would analyze. The human H1N1, H3N2, and swine H1N1 structures are included here.Influenza_Analysis_SequencesThis Excel spreadsheet contains details for all influenza analysis strains (those strains that either directly precede a sequon addition event or have obtained a new sequon). Their names, nucleotide sequences, database, phylogenetic group, analysis group, and host species are all included.
DOI: 10.17876/musewide/dr.1/18227
title: Object GUO_ID 18227 in candels-cdfs-37

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.
DOI: 10.17876/musewide/dr.1/18237
title: Object GUO_ID 18237 in candels-cdfs-40

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.
DOI: 10.60593/ur.d.27976623
title: Michigan Basin Methane Flux Data from "Natural Geologic Methane Emissions from Microseepage in the Michigan Basin are Negligible"

description: Natural geologic methane emissions are a significant and highly uncertain part of the atmospheric methane budget. The largest component of these emissions is from microseepage or the diffuse flux (&lt; 1000 mgCH4/m^2/day) of methane from soils across large areas of hydrocarbon basins. The flux measurements included in this dataset provide data for an area that has not been sampled previously in order to better constrain these emissions. The dataset includes methane, carbon dioxide, and ethane flux measurements across the state of Michigan. Flux measurements were collected with closed, dynamic flux chambers connected to online greenhouse gas analyzers (Picarro/Los Gatos Research). Auxiliary data such as air temperature, air pressure, soil temperature, soil moisture, and wind speed were also collected. Fluxes were calculated via Equation 1 from Kazemi et al., 2021. The d[CH4]/dt is found by taking the average of slopes of 1-minute segments of the concentration stepping every 10 seconds. The uncertainty associated with d[CH4]/dt is the standard error of these slopes. No natural geologic methane emissions were observed in these measurements in the Michigan Basin. The positive fluxes of methane are highly likely to be from modern, biological sources. The code used to produce these calculated fluxes is available at https://github.com/KatieHall1919/Flux-Calculation/tree/main. This work is associated with "Natural Geologic Methane Emissions from Microseepage in the Michigan Basin are Negligible" by Kathleen R. Hall, Thomas S. Weber, Marika Stock, Marc Buursink, Haoran Piao, Mingzhe Zhu, Katey Walter Anthony, and Vasilii Petrenko. References Kazemi, R., Schlageter, W., Hmiel, B., Weber, T.S., Murray, L.T., Petrenko, V.V., 2021. Investigating methane emissions from geologic microseepage in Western New York State, United States. Elem. Sci. Anthr. 9, 00066. https://doi.org/10.1525/elementa.2020.00066
DOI: 10.60593/ur.d.27976623.v1
title: Michigan Basin Methane Flux Data from "Natural Geologic Methane Emissions from Microseepage in the Michigan Basin are Negligible"

description: Natural geologic methane emissions are a significant and highly uncertain part of the atmospheric methane budget. The largest component of these emissions is from microseepage or the diffuse flux (&lt; 1000 mgCH4/m^2/day) of methane from soils across large areas of hydrocarbon basins. The flux measurements included in this dataset provide data for an area that has not been sampled previously in order to better constrain these emissions. The dataset includes methane, carbon dioxide, and ethane flux measurements across the state of Michigan. Flux measurements were collected with closed, dynamic flux chambers connected to online greenhouse gas analyzers (Picarro/Los Gatos Research). Auxiliary data such as air temperature, air pressure, soil temperature, soil moisture, and wind speed were also collected. Fluxes were calculated via Equation 1 from Kazemi et al., 2021. The d[CH4]/dt is found by taking the average of slopes of 1-minute segments of the concentration stepping every 10 seconds. The uncertainty associated with d[CH4]/dt is the standard error of these slopes. No natural geologic methane emissions were observed in these measurements in the Michigan Basin. The positive fluxes of methane are highly likely to be from modern, biological sources. The code used to produce these calculated fluxes is available at https://github.com/KatieHall1919/Flux-Calculation/tree/main. This work is associated with "Natural Geologic Methane Emissions from Microseepage in the Michigan Basin are Negligible" by Kathleen R. Hall, Thomas S. Weber, Marika Stock, Marc Buursink, Haoran Piao, Mingzhe Zhu, Katey Walter Anthony, and Vasilii Petrenko. References Kazemi, R., Schlageter, W., Hmiel, B., Weber, T.S., Murray, L.T., Petrenko, V.V., 2021. Investigating methane emissions from geologic microseepage in Western New York State, United States. Elem. Sci. Anthr. 9, 00066. https://doi.org/10.1525/elementa.2020.00066
DOI: 10.60593/ur.d.28029281
title: Intraoperative Blood Loss with Transexamic Acid in Metastatic Spine Tumor Surgery

description: Primary data regarding patients who received/did not receive transexamic acid during metastatic tumor surgery at single-center institute study. Also includes patient characteristics and tumor-type frequency.
DOI: 10.60593/ur.d.28029281.v2
title: Intraoperative Blood Loss with Transexamic Acid in Metastatic Spine Tumor Surgery

description: Primary data regarding patients who received/did not receive transexamic acid during metastatic tumor surgery at single-center institute study. Also includes patient characteristics and tumor-type frequency.
DOI: 10.17876/musewide/dr.1/18238
title: Object GUO_ID 18238 in candels-cdfs-40

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.
DOI: 10.60593/ur.d.28029281.v1
title: Intraoperative Blood Loss with Transexamic Acid in Metastatic Spine TUmor Surgery

description: Primary data regarding patients who received/did not receive transexamic acid during metastatic tumor surgery at single-center institute study. Also includes patient characteristics and tumor-type frequency.
DOI: 10.17876/musewide/dr.1/18240
title: Object GUO_ID 18240 in candels-cdfs-37

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.
DOI: 10.60593/ur.d.28241174
title: Data and code for "Waterfalls enhance regional methane emissions by enabling dissolved methane to bypass microbial oxidation"

description: A complete description of the data including sampling locations, analytical procedures, and data interpretation can be found in: Rust, R. L., A. Frizzell, and J. D. Kessler (2025). Waterfalls enhance regional methane emissions by enabling dissolved methane to bypass microbial oxidation. Communications Earth & Environment. This record includes all data and code used in the aforementioned article.
DOI: 10.60593/ur.d.28241174.v2
title: Data and code for "Waterfalls enhance regional methane emissions by enabling dissolved methane to bypass microbial oxidation"

description: A complete description of the data including sampling locations, analytical procedures, and data interpretation can be found in: Rust, R. L., A. Frizzell, and J. D. Kessler (2025). Waterfalls enhance regional methane emissions by enabling dissolved methane to bypass microbial oxidation. Communications Earth & Environment. This record includes all data and code used in the aforementioned article.
DOI: 10.60593/ur.d.28241174.v1
title: Data and code for "Waterfalls enhance regional methane emissions by enabling dissolved methane to bypass microbial oxidation"

description: A complete description of the data including sampling locations, analytical procedures, and data interpretation can be found in: Rust, R. L., A. Frizzell, and J. D. Kessler (2025). Waterfalls enhance regional methane emissions by enabling dissolved methane to bypass microbial oxidation. Communications Earth & Environment. https://doi.org/xxxxx.This record includes all data and code used in the aforementioned article.
DOI: 10.17876/musewide/dr.1/18249
title: Object GUO_ID 18249 in candels-cdfs-42

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.
DOI: 10.60593/ur.d.28464302
title: Figure 1 Dataset - Manufactured flow insert development and validation

description: The dataset includes the raw image and cell viability data for the validation of a manufactured microfluidic component. The prism file includes the final figure outline as well as the raw cell viability values in table format.This dataset supports Fluid flow impacts endothelial-monocyte interactions in a model of vascular inflammatory fibrosis, published in <i>Scientific Reports</i><i>,</i><i> </i>Vol. 15, Iss. 3227, January 2025.
DOI: 10.60593/ur.d.28464302.v1
title: Figure 1 Dataset - Manufactured flow insert development and validation

description: The dataset includes the raw image and cell viability data for the validation of a manufactured microfluidic component. The prism file includes the final figure outline as well as the raw cell viability values in table format.This dataset supports Fluid flow impacts endothelial-monocyte interactions in a model of vascular inflammatory fibrosis, published in <i>Scientific Reports</i><i>,</i><i> </i>Vol. 15, Iss. 3227, January 2025.
DOI: 10.17876/musewide/dr.1/18252
title: Object GUO_ID 18252 in candels-cdfs-32

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.
DOI: 10.60593/ur.d.28464347
title: Figure 2 Dataset - The manufacturable flow insert is biocompatible with endothelial culture and reproduces physiological cytoskeletal remodeling with fluidic shear stress

description: The dataset includes raw images, endothelial cell viability data, and cell alignment data for the validation of a manufactured microfluidic component. The prism file includes the final figure outline as well as the raw tabulated data.This dataset supports Fluid flow impacts endothelial-monocyte interactions in a model of vascular inflammatory fibrosis, published in <i>Scientific Reports</i><i>,</i><i> </i>Vol. 15, Iss. 3227, January 2025.