cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4121/69ef244e-673a-46c4-aecc-0d51ab8ac00f.v1
title: Data underlying the publication: Continuously Distributing Entanglement in Quantum Networks with Regular Topologies

description: The data is displayed and discussed in the paper 'Continuously Distributing Entanglement in Quantum Networks with Regular Topologies'. The data corresponds to simulations of quantum networks with a regular topology operating a protocol that continuously distributes entanglement. For further details, we refer to the README file. The (Python) code used to generate, process and plot the data can be found in this GitHub repository: https://github.com/lars-talsma/CD-regular-networks/.
DOI: 10.5281/zenodo.10610554
title: Transkribus Research Domains (2016-2020)

description: Dataset showing the entireity of Transkribus research domains (2016-2020), as well as the number of papers from each research field by year.
DOI: 10.5281/zenodo.10610555
title: Transkribus Research Domains (2016-2020)

description: Dataset showing the entireity of Transkribus research domains (2016-2020), as well as the number of papers from each research field by year.
DOI: 10.5281/zenodo.10610532
title: Assessment of the Psychometric Characteristics of the Italian Version of the Nurse Manager Actions Scale

description: Lommi M, Caruso R, Conte G, Magon A, Porcelli B, Stievano A, Rocco G, Notarnicola I, Sabatino L, Latina R, De Maria M, Di Simone E, De Benedictis A, Gualandi R, Tartaglini D, Ivziku D. Assessment of the Psychometric Characteristics of the Italian Version of the Nurse Manager Actions Scale. Nurs Rep. 2023 Sep 1;13(3):1185-1202. doi: 10.3390/nursrep13030102. PMID: 37755345; PMCID: PMC10534939.

Abstract



Nurse managers play a vital role in healthcare organizations, wielding the ability to substantially enhance work environments, foster nurses' autonomy, and bolster retention within workplaces. In this context, this study focuses on the Nurse Manager Actions scale, aiming to evaluate its items' scalability as well as the scale's validity and reliability among nurses and nurse managers operating within the Italian healthcare context. The study protocol was not registered. To ensure linguistic and cultural alignment, an iterative and collaborative translation process was undertaken. Subsequently, a multi-center cross-sectional design was adopted. Using a web-survey approach, data were collected among 683 nurses and 188 nurse managers between August 2022 and January 2023. The Nurse Manager Actions scale was found to be a valid and reliable instrument in Italian after a Mokken Scale Analysis. For nurses (HT= 0.630, Molenaar-Sijtsma rho = 0.890), the scale included 6 items, while 11 items were confirmed for nurse managers (HT= 0.620, Molenaar-Sijtsma rho = 0.830). Nurse Manager Actions scale scores were correlated with increased satisfaction and decreased intention to leave for both nurses and nurse managers. The employed validation process enhanced the scale validity for use in Italy and provided a model for other researchers to follow when assessing similar measures in different populations. Measuring and empowering nurse manager actions in work contexts is essential to improve the general well-being and retention of nurses, especially in the current nursing shortage.
DOI: 10.5281/zenodo.10610533
title: Assessment of the Psychometric Characteristics of the Italian Version of the Nurse Manager Actions Scale

description: Lommi M, Caruso R, Conte G, Magon A, Porcelli B, Stievano A, Rocco G, Notarnicola I, Sabatino L, Latina R, De Maria M, Di Simone E, De Benedictis A, Gualandi R, Tartaglini D, Ivziku D. Assessment of the Psychometric Characteristics of the Italian Version of the Nurse Manager Actions Scale. Nurs Rep. 2023 Sep 1;13(3):1185-1202. doi: 10.3390/nursrep13030102. PMID: 37755345; PMCID: PMC10534939.

Abstract



Nurse managers play a vital role in healthcare organizations, wielding the ability to substantially enhance work environments, foster nurses' autonomy, and bolster retention within workplaces. In this context, this study focuses on the Nurse Manager Actions scale, aiming to evaluate its items' scalability as well as the scale's validity and reliability among nurses and nurse managers operating within the Italian healthcare context. The study protocol was not registered. To ensure linguistic and cultural alignment, an iterative and collaborative translation process was undertaken. Subsequently, a multi-center cross-sectional design was adopted. Using a web-survey approach, data were collected among 683 nurses and 188 nurse managers between August 2022 and January 2023. The Nurse Manager Actions scale was found to be a valid and reliable instrument in Italian after a Mokken Scale Analysis. For nurses (HT= 0.630, Molenaar-Sijtsma rho = 0.890), the scale included 6 items, while 11 items were confirmed for nurse managers (HT= 0.620, Molenaar-Sijtsma rho = 0.830). Nurse Manager Actions scale scores were correlated with increased satisfaction and decreased intention to leave for both nurses and nurse managers. The employed validation process enhanced the scale validity for use in Italy and provided a model for other researchers to follow when assessing similar measures in different populations. Measuring and empowering nurse manager actions in work contexts is essential to improve the general well-being and retention of nurses, especially in the current nursing shortage.
DOI: 10.5281/zenodo.10610582
title: melanotaenia_goldiei_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.10610583
title: melanotaenia_goldiei_spades_01.fasta.gz

description: .
DOI: 10.17037/data.00003760
title: Data supporting: "The effect of BCG revaccination on the response to unrelated vaccines in urban Ugandan adolescents: results of the POPVAC C randomised, controlled trial"

description: This dataset comprises individual-level data from participants in the POPVAC C randomised controlled trial. POPVAC C was an open-label randomised controlled trial of Bacillus Calmette Guérin (BCG) revaccination versus no BCG among schoolchildren in Entebbe, Uganda (ISRCTN10482904). The aim of the trial was to comprehensively address the hypothesis that revaccination with BCG might enhance responses to unrelated vaccines. A portfolio of vaccines, of potential benefit to the children and comprising live, inert, oral and parenteral, was provided to enable a comprehensive assessment and comparison of effects of BCG revaccination on immune response to vaccines with different characteristics.
DOI: 10.5281/zenodo.10585717
title: Original Data in "Seeded Growth of Single-crystal Black Phosphorus Nanoribbons"
DOI: 10.5281/zenodo.10585718
title: Original Data in "Seeded Growth of Single-crystal Black Phosphorus Nanoribbons"
DOI: 10.5281/zenodo.10610515
title: Original Data in "Seeded Growth of Single-crystal Black Phosphorus Nanoribbons"
DOI: 10.3886/e198103
title: Replication package for "Inframarginal Travelers and Transportation Policy"

description: This replication package replicates the results in "Inframarginal Travelers and Transportation Policy" by Jonathan D. Hall. Please see README.html (or README.md) for more information.
DOI: 10.3886/e198103v1
title: Replication package for "Inframarginal Travelers and Transportation Policy"

description: This replication package replicates the results in "Inframarginal Travelers and Transportation Policy" by Jonathan D. Hall. Please see README.html (or README.md) for more information.
DOI: 10.57764/r62x-wb98
title: Canadian Community Health Survey Public Use Microdata File (CCHS-PUMF)

description: The Canadian Community Health Survey (CCHS) is a nationwide project initiated
by Statistics Canada, aimed at collecting information related to health
status, healthcare utilization, and health determinants among the Canadian
population. The survey's primary objective is to provide data for public
health planning and decision-making to improve the health and well-being of
Canadians. Employing a large, representative sample, the CCHS covers a wide
array of topics including chronic health conditions, mental health, and
lifestyle factors influencing health such as diet, physical activity, and
smoking habits.
DOI: 10.25934/pr00004815.1
title: Available IPD datapackage for study 'A Multicenter, Double-Blind, Randomized-Withdrawal Trial of Subcutaneous Golimumab, a Humanized Anti-TNFa Antibody, in Subjects With Active Polyarticular Juvenile Idiopathic Arthritis (JIA) Despite Standard Therapy'

description: The purpose of this study is to evaluate the efficacy and safety of golimumab (CNTO 148) in patients who have active juvenile idiopathic arthritis (JIA) and at least 5 joints with active arthritis that have poor response to methotrexate.
DOI: 10.5281/zenodo.10610586
title: Cardiorespiratory coupling is associated with exercise capacity in athletes: A cross-sectional study

description: Abreu RM, Cairo B, Rehder-Santos P, da Silva CD, Signini ÉF, Milan-Mattos JC, Sakaguchi CA, Catai AM, Porta A. Cardiorespiratory coupling is associated with exercise capacity in athletes: A cross-sectional study. Respir Physiol Neurobiol. 2024 Feb;320:104198. doi: 10.1016/j.resp.2023.104198. Epub 2023 Nov 11. PMID: 37956746.

Abstract



Purpose: To determine the association between exercise capacity based on peak oxygen uptake (VO2peak) and resting cardiorespiratory coupling (CRC) levels in athletes and non-athletes' subjects.

Methods: A cross-sectional study was carried out in 42 apparently healthy male subjects, aged between 20 and 40 years old. The participants were allocated into athletes (n = 21) and non-athletes (n = 21) groups. Resting electrocardiogram and respiratory movement (RESP) were simultaneously acquired during 15 min in supine position and quiet breathing. The beat-to-beat heart period (HP) and RESP series were determined from the recorded signals. Traditional analysis of HP based on frequency domain indexes was performed considering the high-frequency (0.15 - 0.45 Hz) components. To compute the CRC, the linear association between HP and RESP series was determined via squared coherence function and directionality of interaction was investigated through the causal extension of this approach. The exercise capacity was assessed through incremental cardiopulmonary exercise testing in order to determine the VO2peak.

Results: Traditional analysis of HP based on high-frequency index was not correlated with exercise capacity in the athletes (r = -0.1, p = 0.5) and non-athletes (r = -0.1, p = 0.3) cohorts. However, resting CRC values was associated with exercise capacity in athletes (r = 0.4, p = 0.03), but not in the non-athletes group (r = -0.2, p = 0.3).

Conclusion: These results suggest that improved resting values of CRC is associated with higher exercise capacity (VO2peak) in endurance athletes. Moreover, frequency domain of HP was not sensitive to identifying this relationship, probably because effects of training on parasympathetic modulation might be affected by respiratory dynamics, and this influence has a directionality (i.e., from RESP to HP).
DOI: 10.5281/zenodo.10610587
title: Cardiorespiratory coupling is associated with exercise capacity in athletes: A cross-sectional study

description: Abreu RM, Cairo B, Rehder-Santos P, da Silva CD, Signini ÉF, Milan-Mattos JC, Sakaguchi CA, Catai AM, Porta A. Cardiorespiratory coupling is associated with exercise capacity in athletes: A cross-sectional study. Respir Physiol Neurobiol. 2024 Feb;320:104198. doi: 10.1016/j.resp.2023.104198. Epub 2023 Nov 11. PMID: 37956746.

Abstract



Purpose: To determine the association between exercise capacity based on peak oxygen uptake (VO2peak) and resting cardiorespiratory coupling (CRC) levels in athletes and non-athletes' subjects.

Methods: A cross-sectional study was carried out in 42 apparently healthy male subjects, aged between 20 and 40 years old. The participants were allocated into athletes (n = 21) and non-athletes (n = 21) groups. Resting electrocardiogram and respiratory movement (RESP) were simultaneously acquired during 15 min in supine position and quiet breathing. The beat-to-beat heart period (HP) and RESP series were determined from the recorded signals. Traditional analysis of HP based on frequency domain indexes was performed considering the high-frequency (0.15 - 0.45 Hz) components. To compute the CRC, the linear association between HP and RESP series was determined via squared coherence function and directionality of interaction was investigated through the causal extension of this approach. The exercise capacity was assessed through incremental cardiopulmonary exercise testing in order to determine the VO2peak.

Results: Traditional analysis of HP based on high-frequency index was not correlated with exercise capacity in the athletes (r = -0.1, p = 0.5) and non-athletes (r = -0.1, p = 0.3) cohorts. However, resting CRC values was associated with exercise capacity in athletes (r = 0.4, p = 0.03), but not in the non-athletes group (r = -0.2, p = 0.3).

Conclusion: These results suggest that improved resting values of CRC is associated with higher exercise capacity (VO2peak) in endurance athletes. Moreover, frequency domain of HP was not sensitive to identifying this relationship, probably because effects of training on parasympathetic modulation might be affected by respiratory dynamics, and this influence has a directionality (i.e., from RESP to HP).
DOI: 10.5281/zenodo.7056534
title: Nucleosomal and subnucleosomal organization of transcription cis-regulatory elements in mouse embryonic stem cells

description: We report an in-depth analysis of nucleosomal and subnucleosomal organization at cis-regulatory elements (CREs) in mouse embryonic stem (ES) cells. We used chromatin fragmented by a moderate dose of micrococcal nuclease (MNase) as input for ChIP-seq with antibodies against histones and transcription factors, and high-coverage deep-sequencing. Centrifugation of chromatin through sucrose gradients, followed by ChIP-seq, allowed the characterization of different subclasses of subnucleosomal particles having distribution patterns specific to enhancers, gene promoters and CTCF binding sites. We also provide datasets showing that this particular chromatin organization of CREs is conserved in the human melanoma 501Mel cell line.
description: The bigwig was created with deeptools from the replicate's fusion. Used parameters for bamCoverage : --outFileFormat bigwig --binSize 1 --blackListFileName http://mitra.stanford.edu/kundaje/akundaje/release/blacklists/mm9-mouse/mm9-blacklist.bed.gz --effectiveGenomeSize 2701495761 --normalizeUsing RPKM --ignoreForNormalization chrX chrY chrM --skipNonCoveredRegions --MNase --minFragmentLength 10 --extendReads --centerReads --maxFragmentLength 500 We realized a liftover to convert from mm9 to mm10 genome version for both bed and bigwig with Crossmap (v0.2.8) and http://hgdownload.cse.ucsc.edu/goldenPath/mm9/liftOver/mm9ToMm10.over.chain.gz For human datas, hg38 was used. For the coverage, we removed fragment in the black list (http://mitra.stanford.edu/kundaje/akundaje/release/blacklists/hg38-human/hg38.blacklist.bed.gz)
DOI: 10.5281/zenodo.10609917
title: cBAF generates subnucleosomes that expand OCT4 binding and function beyond DNA motifs at enhancers

description: The canonical BAF complex (cBAF) is essential for chromatin opening at enhancers. However, the nature of the open chromatin remains unclear. Here we show that in addition to producing histone-free DNA, cBAF generates stable hemisome-like subnucleosomal particles containing the four core histones associated with 50-80 base pairs of DNA. Our genome-wide analysis indicates that cBAF makes these particles by targeting and splitting fragile nucleosomes. In mouse embryonic stem cells, these subnucleosomes become an in vivo binding substrate for the master transcription factor OCT4 independently of the presence of OCT4 DNA motifs. At enhancers, the OCT4-subnucleosome interaction increases OCT4 occupancy and amplifies the genomic interval bound by OCT4 by up to one order of magnitude, compared to the region occupied on histone-free DNA. We propose that cBAF-dependent subnucleosomes orchestrate a molecular mechanism that projects OCT4 function in chromatin opening beyond its DNA motifs.
description: The bigwig was created with deeptools from the replicate's fusion. Used parameters for bamCoverage : --outFileFormat bigwig --binSize 1 --blackListFileName http://mitra.stanford.edu/kundaje/akundaje/release/blacklists/mm9-mouse/mm9-blacklist.bed.gz --effectiveGenomeSize 2701495761 --normalizeUsing RPKM --ignoreForNormalization chrX chrY chrM --skipNonCoveredRegions --MNase --minFragmentLength 10 --extendReads --centerReads --maxFragmentLength 500 We realized a liftover to convert from mm9 to mm10 genome version for both bed and bigwig with Crossmap (v0.2.8) and http://hgdownload.cse.ucsc.edu/goldenPath/mm9/liftOver/mm9ToMm10.over.chain.gz For human datas, hg38 was used. For the coverage, we removed fragment in the black list (http://mitra.stanford.edu/kundaje/akundaje/release/blacklists/hg38-human/hg38.blacklist.bed.gz). For the low100 files, we used a limit of 100 for the value of the max fragment length.
DOI: 10.5284/1053682
title: Archaeologia Aeliana - Journal of the Society of Antiquaries of Newcastle

description: Archaeologia Aeliana is the journal of the Society of Antiquaries of Newcastle upon Tyne, which is the oldest provincial antiquarian society in the country, founded in 1813. The Society has always had an interest in archaeology and antiquities generally. Its particular focus, however, from the beginning, has been the North East of England (the historic counties of Northumberland and Durham), centred on Newcastle upon Tyne. It has also always had a special interest in Hadrian's Wall, and the journal has carried many important papers and reports on the Wall.

The Society probably started collecting letters and other items for publication in Archaeologia Aeliana as soon as it (the Society) came into existence. Throughout the nineteenth century, Archaeologia Aeliana was published in parts, which subscribers (i.e. members of the Society) were meant to bind into complete volumes once the last part for the volume had been issued. The very first part had the imprint-date '1816', but seems not to have been issued till 1817. The first volume was completed in 1822, the date on the volume's title-page. (The PDFs for the first volume include the title-page of the very first part of 1816 or 1817.)

The journal has changed format on four occasions so far. Each time this happened, the volume-numbering was re-started at '1'. This means that references to individual volumes have to specify the series-number as well as the volume-number (e.g. 'Second Series, vol. 21', or 'Fifth Series, vol. 36'). The changes of format probably reflect the views and personalities of the very small number of unstoppable, workaholic, and rather autocratic Editors that the journal had between 1856 and 1995. These included the major local antiquaries W.H.D. Longstaffe (1856-1881), Robert Blair (1883-1923), C.H. Hunter Blair (1924-1961) and John Philipson (1962-1995). The First Series (1822-1855) was 'edited by a committee', which included (in the early years) John Hodgson, the great historian of Northumberland.

The word 'Aeliana' in the journal's title (usually pronounced 'Eeliahner') is a Latin-style adjective meaning '[of] Newcastle'. It comes from the name of the Hadrian's Wall fort at Newcastle, 'Pons Aelius' (or 'Pons Aelii'), which means 'Aelius Bridge'. The fort was built c. AD 200, about 80 years later than Hadrian's Wall itself, and later than the bridge across the Tyne (the 'Pons Aelius' itself), whose position was fairly certainly overlooked by the fort. 'Aelius' was the family-name of the Emperor Hadrian. This association with the emperor himself would probably have meant a lot to the founders of the Society in 1813, who seem to have regarded 'Pons Aelius' as an appropriate synonym for 'Newcastle'.

The digitisation of Archaeologia Aeliana was generously supported by the Sir James Knott Trust and the Marc Fitch Fund, to both of whom the Society is very much indebted.
DOI: 10.23634/mmu.00633828
title: Ido Service project - work package one data

description: The IDoService project aimed to develop a special service to allow people living with mild to moderate dementia to plan, connect with and participate in tailored opportunities to realise themselves and continue to be fully part of society. It is made up of three stages, called Work Package 1, 2 and 3. This Open Access folder relates to Work Package 1.

Work Package one (WP1) contains interviews and focus groups with the community. We conducted individual and group interviews with people living with mild to moderate dementia, their family and friends, and with other stakeholders in the field of dementia and meaningful activities. We discussed the availability, accessibility, needs, and wishes regarding social and leisure opportunities for people at early stages of dementia.

The interviews were complimented by a literature review and an overview of local services offer and access support to them (e.g., financial support, specific transportation offer) regarding activities for people living with dementia in the Greater Manchester.

The data collection provided a clear overview of the available opportunities regarding meaningful activities, and a working basis for the co-design workshops (work package 2).
DOI: 10.25934/pr00004863.1
title: Available IPD datapackage for study 'A Golimumab Phase 3b, Multicenter, Assessment of Intravenous Efficacy in Rheumatoid Arthritis Subjects Who Have Diminished Disease Control Despite Treatment With Infliximab (REMICADE®)'

description: This is a Phase 3b, multicenter study of the efficacy of golimumab 2 mg/kg IV in subjects with active rheumatoid arthritis who are receiving methotrexate and have inadequate disease control (defined as an erythrocyte sedimentation rate [ESR]-based Disease Activity Score in 28 joints [DAS28] ≥ 3.2 and ≥ 4 swollen and ≥ 4 tender joints) despite current anti-TNFα therapy with infliximab 2 - 4 mg/kg every 4 weeks, 2 - 5 mg/kg every 5 weeks, 3 - 6 mg/kg every 6 weeks, 3 - 7mg/kg every 7 weeks, or 4 - 8 mg/kg every 8 weeks. To be eligible for participation, subjects must have previously demonstrated initial and/or temporary improvement in disease signs and symptoms, who have since exhibited a diminished response despite continued treatment. It is estimated that 200 subjects will be enrolled in the study at approximately 85 global sites.
DOI: 10.17037/data.00003761
title: Data supporting "Does schistosome or malaria exposure contribute to urban-rural differences in vaccine responses in Uganda? A causal mediation analysis using data from three linked randomised controlled trials."

description: This dataset comprises individual-level data from participants in the POPVAC series of three randomised controlled trials. POPVAC A was conducted among schoolchildren from Koome islands, Uganda (a schistosomiasis-endemic setting), POPVAC B was conducted among schoolchildren from Jinja district, Uganda (a malaria-endemic setting), POPVAC C was conducted among schoolchildren from Entebbe, Uganda (a lower infection prevalence setting).
DOI: 10.17043/blichner-2023-bvoc-aerosol-2
title: Earth system model simulations of 2012 to 2018 for studying vegetation-aerosol-cloud feedback