cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4022509
title: Floral signals evolve in a predictable way under artificial and pollinator selection in Brassica rapa

description: You find here the R scripts and data necessary to reproduce the results published in "Floral signals evolve in a predictable way under artificial and pollinator selection in Brassica rapa" by Zu et al. 2020 BMC Evolutionary Biology. The whole analysis is in the script "G-analysis.R". The associated data is loaded from the ".Rdata" and ".txt" files associated. The scripts "randG...R" are required to generate bootstrap replicates of G-matrix estimates. This is best done on an HPC cluster. To avoid having to run those randomizations, we provide the summary data we have generated from randomizations to run the full analysis. In Zu et al., we used data from an artificial selection and a pollinator (bumblebee, hoverfly) evolution experiment with fast cycling <em>Brassica rapa </em>plants to predict evolutionary changes of 12 floral volatiles and 4 morphological floral traits in response to selection. Using the observed selection gradients and the genetic variance-covariance matrix (G-matrix) of the traits, we showed that the observed responses of most floral traits including volatiles were predicted in the right direction in both artificial- and bumblebee-selection experiment. Genetic covariance had a mix of constraining and facilitating effects on evolutionary responses. We further revealed that G-matrices also evolved in the selection processes. We are depositing here the raw phenotypic data used to estimate the G-matrices in the artificial selection experiment along with the R scripts used to run the analyses. The phenotypic data of the pollinator experimental evolution experiment have been published elsewehere (Gervasi & Schiestl, 2017, Nature Communications 8:14691; doi:10.1038/ncomms14691).
DOI: 10.6084/m9.figshare.12941684
title: Supplementary Material for: Oxytocin Receptor Gene DNA Methylation: A Biomarker of Treatment Response in Obsessive-Compulsive Disorder?

description: <b><i>Introduction:</i></b> Obsessive-compulsive disorder (OCD) is associated with high chronicity and treatment resistance, indicating the need for early therapy response markers enabling fast and personalized treatment adaptations. Although epigenetic mechanisms such as DNA methylation of the oxytocin receptor <i>(OXTR)</i> gene have previously been linked to OCD pathogenesis, epigenetic markers as predictors of treatment success have not yet been investigated in OCD. <b><i>Objective:</i></b> For the first time, this therapyepigenetic study aimed to investigate the role of <i>OXTR</i> methylation as a treatment response marker in OCD. <b><i>Methods:</i></b> In total, 113 inpatients with OCD (57 females) were compared to 113 age- and sex-matched healthy controls. Patients were investigated over a 10-week course of standardized, OCD-specific cognitive-behavioral psychotherapy. Clinical response was measured using the Yale-Brown Obsessive Compulsive Scale (Y-BOCS) at baseline, before in vivo exposure, and after therapy. <i>OXTR</i> exon III methylation was analyzed via direct sequencing of sodium bisulfite-treated DNA extracted from blood cells. <b><i>Results:</i></b> Relative <i>OXTR</i> hypermethylation was observed in OCD patients compared to healthy controls. In OCD, higher baseline <i>OXTR</i> methylation was found to predict impaired treatment response at both categorical (responders vs. nonresponders) and dimensional (relative Y-BOCS reduction) levels, whereas lower baseline methylation was related to treatment response and greater symptom improvements. Analysis of Y-BOCS subdimensions revealed that the association between <i>OXTR</i> hypermethylation with impaired treatment response applied especially to symptoms related to obsessions, but not compulsions. <b><i>Conclusions:</i></b> <i>OXTR</i> hypermethylation may constitute a predictive marker of impaired treatment response in OCD and thus carries great potential for future personalized treatment efforts in OCD.
DOI: 10.5281/zenodo.4022818
title: Latin embeddings

description: Lemma embeddings for Latin can be downloaded here. Embeddings have been evaluated on a novel benchmark for the synonym selection task available in the file <em>syn-selection-benchmark-Latin.tsv</em>. You can visually explore the embeddings online: https://embeddings.lila-erc.eu/. These resources are licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
description: {"references": ["Sprugnoli, R., Passarotti, M., & Moretti, G. (2019). Vir is to Moderatus as Mulier is to Intemperans-Lemma Embeddings for Latin. In Proceedings of the Sixth Italian Conference on Computational Linguistics (CLiC-it 2019)."]}
DOI: 10.5281/zenodo.4022817
title: Latin embeddings

description: Lemma embeddings for Latin can be downloaded here. Embeddings have been evaluated on a novel benchmark for the synonym selection task available in the file <em>syn-selection-benchmark-Latin.tsv</em>. You can visually explore the embeddings online: https://embeddings.lila-erc.eu/. These resources are licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
description: {"references": ["Sprugnoli, R., Passarotti, M., & Moretti, G. (2019). Vir is to Moderatus as Mulier is to Intemperans-Lemma Embeddings for Latin. In Proceedings of the Sixth Italian Conference on Computational Linguistics (CLiC-it 2019)."]}
DOI: 10.5281/zenodo.4023844
title: UDante: First Release

description: This repository contains the Gold Standard (GS) created in the context of the UDante project that has the aim of developing a new treebank containing all of Dante Alighieri’s Latin works. The GS includes 33 sentences of increasing complexity manually annotated by an UD expert. Texts were taken from the DanteSearch corpus: the original TEI-XML files, which were already manually lemmatised and morphologically tagged, were converted into the CoNLL-U format and then syntactically annotated using ConlluEditor.
DOI: 10.5281/zenodo.4023843
title: UDante: First Release

description: This repository contains the Gold Standard (GS) created in the context of the UDante project that has the aim of developing a new treebank containing all of Dante Alighieri’s Latin works. The GS includes 33 sentences of increasing complexity manually annotated by an UD expert. Texts were taken from the DanteSearch corpus: the original TEI-XML files, which were already manually lemmatised and morphologically tagged, were converted into the CoNLL-U format and then syntactically annotated using ConlluEditor.
DOI: 10.7910/dvn/hrggne/1rgnmz
title: small business_cybersecurity_checklist-2020-2021.xls

description: :unav
DOI: 10.6084/m9.figshare.12941705
title: Dai and Karato Experimental Data.xlsx

description: Dai and Karato Experimental Data.xlsx
DOI: 10.6084/m9.figshare.12941714.v1
title: OCSCP

description: This is a set of spatial data sets which can use for discovering spatial co-location patterns.
DOI: 10.6084/m9.figshare.12941714
title: OCSCP

description: This is a set of spatial data sets which can use for discovering spatial co-location patterns.
DOI: 10.6084/m9.figshare.12941690.v1
title: A comparative genome centric analysis of hotspring cyanobacteria Mastigocladus laminosus UU774

description: Prokka annotation of hotspring cyanobacteria Mastigocladus laminosus UU774 (MLA UU774)<br>
DOI: 10.6084/m9.figshare.12941690
title: A comparative genome centric analysis of hotspring cyanobacteria Mastigocladus laminosus UU774

description: Prokka annotation of hotspring cyanobacteria Mastigocladus laminosus UU774 (MLA UU774)<br>
DOI: 10.21227/herz-xy41
title: Facial Masks and Respirators Database (FMR-DB)

description: Recently, the coronavirus pandemic has made the use of facial masks and respirators common, the former to reduce the likelihood of spreading saliva droplets and the latter as Personal Protective Equipment (PPE). As a result, this caused problems for the existing face detection algorithms. For this reason, and for the implementation of other more sophisticated systems, able to recognize the type of facial mask or respirator and to react given this information, we created the Facial Masks and Respirators Database (FMR-DB), that, unlike the other database released so far, also has an accurate classification of the most important types of facial masks and respirators.
DOI: 10.21227/p3gq-nw64
title: Facial Masks and Respirators Database (FMR-DB)

description: Recently, the coronavirus pandemic has made the use of facial masks and respirators common, the former to reduce the likelihood of spreading saliva droplets and the latter as Personal Protective Equipment (PPE). As a result, this caused problems for the existing face detection algorithms. For this reason, and for the implementation of other more sophisticated systems, able to recognize the type of facial mask or respirator and to react given this information, we created the Facial Masks and Respirators Database (FMR-DB), that, unlike the other database released so far, also has an accurate classification of the most important types of facial masks and respirators.
DOI: 10.7910/dvn/8gmguz/ki1lpz
title: small business_cybersecurity_checklist-2020-2021.xls

description: small business_cybersecurity_checklist-2020-2021.xls
DOI: 10.34740/kaggle/dsv/1479520
title: MI FitBit Dataset
DOI: 10.7910/dvn/2yvy5j/7bnszq
title: Brazil_candidates_replication.7z

description: :unav
DOI: 10.6084/m9.figshare.12941750
title: CRKP C20 and C39

description: whole genome sequence of C20 and C39
DOI: 10.6084/m9.figshare.12941750.v1
title: CRKP C20 and C39

description: whole genome sequence of C20 and C39
DOI: 10.6084/m9.figshare.12941717
title: Supplementary Material for: Sensory Stimulation for Nursing-Home Residents: Systematic Review and Meta-Analysis of Its Effects on Sleep Quality and Rest-Activity Rhythm in Dementia

description: <b><i>Introduction:</i></b> Disrupted sleep-wake cycles might be associated with an exacerbation of behavioural disturbances and accelerate disease progression in dementia. The effect of sensory stimulation for improving sleep quality is unclear. <b><i>Methods:</i></b> A systematic literature search was performed and all studies examining the effects of a sensory stimulation intervention (i.e. bright light, massage, acupuncture, animal-assisted interventions) on rest-activity rhythm (RAR) and/or nocturnal restlessness in nursing-home residents with dementia were included. <b><i>Results:</i></b> Sensory stimulation was shown to improve nocturnal behavioural restlessness as well as sleep duration and continuation, but the effect on the number of awakenings, RAR, and daytime sleep was negligible. Notable was the high heterogeneity between studies regarding treatments and patients’ characteristics and sleep parameters. <b><i>Conclusion:</i></b> Sleep quality and nocturnal restlessness in nursing-home residents with dementia may benefit from sensory stimulation. An environment with sensory stimulation may prevent or improve sleep disturbances in nursing homes, and thereby contribute to a better quality of life for their patients.
DOI: 10.6084/m9.figshare.12941729
title: Data for the paper "A room with a view: the importance of nearby nature for mental health during the COVID-19 pandemic"

description: Complete data set used for the paper "A room with a view: the importance of nearby nature for mental health during the COVID-19 pandemic"
DOI: 10.6084/m9.figshare.12933239.v1
title: Final list of papers.xlsx

description: Final list of papers used in systematic literature review to create a process mining value framework.
DOI: 10.6084/m9.figshare.12933239
title: Final list of papers.xlsx

description: Final list of papers used in systematic literature review to create a process mining value framework.
DOI: 10.5439/1650568
title: ARM: camera for assessing skyrad performance (CAMSKYRAD)

description: caminst
DOI: 10.5281/zenodo.4023911
title: DNA methylation signatures in whole blood as predictors of breast cancer risk

description: Dataset contains normalized methylation ratios generated from RRBS sequences for the manuscript entitled "<strong>DNA methylation signatures in whole blood as predictors of breast cancer risk"</strong>. Data originating from tissue samples are stored in data files betas_cpgislands.csv, betas_genes.csv, betas_promoters.csv; while data originating from buffy coat samples are stored in data files betas_BC_cpgislands.csv, betas_BC_genes.csv, betas_BC_promoters.csv.
DOI: 10.5281/zenodo.4022842
title: DNA methylation signatures in whole blood as predictors of breast cancer risk

description: Dataset contains normalized methylation ratios generated from RRBS sequences for the manuscript entitled "<strong>DNA methylation signatures in whole blood as predictors of breast cancer risk"</strong>. Data originating from tissue samples are stored in data files betas_cpgislands.csv, betas_genes.csv, betas_promoters.csv; while data originating from buffy coat samples are stored in data files betas_BC_cpgislands.csv, betas_BC_genes.csv, betas_BC_promoters.csv.
DOI: 10.5439/1659117
title: NOAA PMEL Station Chemistry Data

description: Except for Barrow, submicron samples are collected on a daily basis and Supermicron samples are collected on a weekly basis. At Barrow sample periods change with season and aerosol loading. The submicron - supermicron split is made with a Berner-type cascade impactor having a D50,aero of 1.0 um at the RH of the sample stream. Hence, the submicron data is for particle sizes &lt; 1.0 um and the supermicron data is for particle sizes &gt; 1.0 um and &lt; 10 um. The RH of the sampled aerosol is &lt; 40% at all stations. All samples have been analyzed by ion chromatography for Cl-, NO3-, SO4-2, Na+, NH4+, K+, Mg2+, and Ca+2. Recently, the analysis of MSA-, Br-, and oxalate has been added to some stations. Samples also are analyzed for total mass by gravimetric analysis at 55 +/- 5% RH. All ion and mass concentrations are given as ug/m3 at STP. More details of the sampling and analysis methods can be found in Quinn et al., J. Geophys. Res., 105, 6785 - 6805, 2000. There are two separate files of data for each station: one for submicron data and one for supermicron data.
DOI: 10.5439/1659250
title: Surface Albedo/BRDF Parameters (Terra/Aqua MODIS)

description: Spatially and temporally complete surface spectral albedo/BRDF products over the ARM SGP area were generated using data from two Moderate Resolution Imaging Spectroradiometer (MODIS) sensors on Terra and Aqua satellites. A landcover-based fitting (LBF) algorithm is developed to derive the BRDF model parameters and albedo product (Luo et al., 2004a). The approach employs a landcover map and multi-day clearsky composites of directional surface reflectance. The landcover map is derived from the Landsat TM 30-meter data set (Trishchenko et al., 2004a), and the surface reflectances are from MODIS 500m-resolution 8-day composite products (MOD09/MYD09). The MOD09/MYD09 data are re-arranged into 10-day intervals for compatibility with other satellite products, such as those from the NOVA/AVHRR and SPOT/VGT sensors. The LBF method increases the success rate of the BRDF fitting process and enables more accurate monitoring of surface temporal changes during periods of rapid spring vegetation green-up and autumn leaf-fall, as well as changes due to agricultural practices and snowcover variations (Luo et al., 2004b, Trishchenko et al., 2004b). Albedo/BRDF products for MODIS on Terra and MODIS on Aqua, as well as for Terra/Aqua combined dataset, are generated at 500m spatial resolution and every 10-day since March 2000 (Terra) and July 2002 (Aqua and combined), respectively. The purpose for the latter product is to obtain a more comprehensive dataset that takes advantages of multi-sensor observations (Trishchenko et al., 2002). To fill data gaps due to cloud presence, various interpolation procedures are applied based on a multi-year observation database and referring to results from other locations with similar landcover property. Special seasonal smoothing procedure is also applied to further remove outliers and artifacts in data series.
DOI: 10.15468/nrubzx
title: AIRI Desert Locust Monitoring, Forecasting and Assement in Africa and Southwest Asia Archive 2018-01-01 to 2020-02-20

description: Integrated with multi-source Earth Observation data, e.g. meteorological data, field data, and remote sensing data (such as GF series in China, MODIS and Landsat series in US, Sentinel series in EU), and self- developed models and algorithms for Desert Locust monitoring and forecasting, the research team at the Aerospace Information Research Institute CAS constructed the ‘Crop pests and diseases monitoring and forecasting system’, which could regularly release thematical maps and reports on Desert Locust. The Desert Locust has ravaged the Horn of Africa and Southwest Asia, posing serious threats on agricultural production and food security of the inflicted regions. The Food and Agriculture Organization of the United nations (FAO)has issued a worldwide Desert Locust warning, calling for joint efforts from multiple countries in prevention and control of the pest to ensure food security and regional stability. The migration path of the Desert Locust and make a detailed analysis on the possibility of the Desert Locust invasion of China has been tracked.
DOI: 10.15468/cxnph6
title: Emberiza pallasi

description: Discovered and saved by CBCGDF volunteers Xing Shijie and Wang Xiaoye (13081125118, 13582713369). Occurrence data on Emberiza pallas created by CBCGDF Linda Wong and Jinfeng Zhou on August 31,2020.
DOI: 10.15468/bn2uce
title: Platalea Minor 0827

description: 4 nests of black-faced spoonbill (20 total) found North of Huanxiling. The nesting form is completely different from the known breeding places. It's on land instead of islands, on trees instead of on rocks.
DOI: 10.15468/ggtrvj
title: Otis tarda

description: Jinzhou in Liaoning province China is the wintering place of the Great Bustard. This is the observation record of the largest group of Great Bustard in Jinzhou. Data contributed by CBCGDF on August 19, 2020.
DOI: 10.15468/8qzqs2
title: Grus leucogeranus

description: Jinzhou is an important stop for the migration of snow cranes. There is a young bird in this observation record. Every year in spring and autumn, we have a large number of observation records of snow crane migration and stopovers.
DOI: 10.15468/45nq4g
title: Phoca largha

description: Observation of spotted seal by CBCGDF team on 28 March 2020
DOI: 10.15468/59cmnt
title: Manidae

description: pangolin discovered by CBCGDF in China a total of 7 records, Chinese pangolin and Malayan pangolin distributed in Zhejiang, Yunan, Jiangxi, Fujian and Guangdong
DOI: 10.15468/gg9y9e
title: Acer pentaphyllum Diels

description: Acer pentaphyllum Diels published by CBCGDF on July 20th
DOI: 10.15468/yu3bwh
title: Neophocaena asiaeorientalis subsp. Asiaeorientalis

description: Little Hope found by China Biodiversity Conservation and Green Development Foundation Tangshan Hebei province, China
DOI: 10.15468/egy2gn
title: Eumetopias jubatus

description: Great Little found by China Biodiversity Conservation and Green Development Foundation Yantai Shandong province, China
DOI: 10.15468/92yvr5
title: CCAfa for Acer pentaphyllum Diels

description: CBCGDF Community Conservation Area for Acer pentaphyllum Diels in Tianshui Gansu province, China
DOI: 10.15468/7rsevy
title: Libellula angelina Selys was found in Tianjin China recently

description: Libellula angelina Selys assessed as one of critically endangered species by IUCN was found in Tianjin China recently.That species was recorded in South Korea only,which means Tianjin China might be included in their distribution areas.
DOI: 10.15468/metmwe
title: Manis pentadactyla were found in China

description: From the end of 2019 to the beginning of 2020, volunteers of CBCGDF found one Malayan Pangolin in Yunnan Province, and two Chinese Pangolins respectively in Guangdong Province and Jiangxi Province.
DOI: 10.15468/rhbsus
title: dongfangbaiguan

description: Volunteers have found 17 Ciconia boyciana that died of poisoning between November and December 2019.Their discovery sites are in Tianjin and Caofeidian wetland reserve respectively.13 of them were confirmed as Furadan poisoning.
DOI: 10.21227/kd1k-td45
title: Facial Masks and Respirators Database (FMR-DB)

description: Recently, the coronavirus pandemic has made the use of facial masks and respirators common, the former to reduce the likelihood of spreading saliva droplets and the latter as Personal Protective Equipment (PPE). As a result, this caused problems for the existing face detection algorithms. For this reason, and for the implementation of other more sophisticated systems, able to recognize the type of facial mask or respirator and to react given this information, we created the Facial Masks and Respirators Database (FMR-DB), that, unlike the other database released so far, also has an accurate classification of the most important types of facial masks and respirators.
DOI: 10.5281/zenodo.4022282
title: JET-ILW Linear Pedestal ETG Data

description: Data associated with paper 'Toroidal and slab ETG instability dominance in the linear spectrum of JET-ILW pedestals.' See attached Readme file for instructions.
description: JFP is supported by EPSRC Scholarship No 3000207032. FIP and MB are supported in part by the Engineering and Physical Sciences Research Council (EPSRC) [Grant Number EP/R034737/1]. CMR is supported in part by the RCUK Energy-Programme (grant number EP/EPI501045). PGI is supported by an EU H2020 grant, agreement No 3000207035. Computational time provided by Plasma HEC Consortium EPSRC (grant number EP/L000237/1). This work has been carried out within the framework of the EUROfusion Consortium and has received funding from the Euratom research and training programme 2014-2018 and 2019-2020 under grant agreement No 633053 and from the RCUK Energy Programme (grant number EP/T012250/1 and EP/P012450/1). Withal, this work has been carried out within the framework of the Contract for the Operation of the JET Facilities and has received funding from the European Union's Horizon 2020 research and innovation programme. The views and opinions expressed herein do not necessarily reflect those of the European Commission. The authors acknowledge EUROfusion, the EUROfusion High Performance Computer (Marconi-Fusion), the use of ARCHER through the Plasma HEC Consortium EPSRC grant numbers EP/L000237/1 and EP/R029148/1 under the projects e281-gs2, and software support from Joseph Parker through the Plasma-CCP Network under EPSRC grant number EP/M022463/1. This work also received computational support from Joseph Parker of CoSeC (the Computational Science Centre for Research Communities), funded through CCP-Plasma/Plasma-HEC EPSRC grants EP/R029148/1 and EP/M022463/1. This work was supported by the US Department of Energy through grant DE-FG02-93ER-54197. JFP acknowledges travel support from Merton College, Oxford. We are grateful for the hospitality of the Wolfgang Pauli Institute, University of Vienna.