cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7274/29019200.v1
title: ClpX as a Tool for Assessing the Impact of Rate and Direction of Vectorial Protein Appearance on Folding Outcomes

description: In the cell, protein folding can start from N- to C-terminus, as a protein is synthesized by the ribosome. Vectorial appearance enables proteins to fold progressively, exploring an energy landscape that increases in size and complexity as the polypeptide chain length increases. However, little is known about the impact of vectorial appearance on protein folding mechanisms, including the extent to which vectorial appearance may favor the formation of folding intermediates that are more (or less) likely to fold to the native, functional structure, versus misfolding and aggregation. 
Most of our current understanding of protein folding mechanisms is derived from in vitro experiments initiated by diluting a full-length protein out of a chemical denaturant, a scenario that enables folding to begin with interactions formed between any two portions of the entire polypeptide chain. Currently, no method exists to directly compare the impact of initiating folding from the N- versus C-terminus. 
Here, I adapted the ring-shaped AAA+ translocase ClpX to induce vectorial protein appearance from either terminus via translocation through the central pore of ClpX and used this approach to study the impact of vectorial appearance on folding outcomes for two fluorescent proteins. 
In Chapter 3, I implement a competitive inhibition strategy to show that native proteins that are unfolded and translocated (from C- to N- terminus) by ClpX can refold after extrusion out of the central pore of the translocase. In Chapter 4, I tested covalent linkage strategies for the attachment of an N-terminal ClpX affinity tag, ultimately identifying a SpyCatcher-based approach as the most efficient strategy. Finally, in Chapter 5, I studied the effect that vectorial appearance in opposite directions has on folding outcomes of pre-unfolded proteins. I conclude that vectorial appearance significantly affects folding in a direction-specific manner, and the rate of chain appearance further influences folding outcomes. Moreover, although the fluorescent proteins have very similar native structures, their folding mechanisms were distinctly sensitive to vectorial appearance. In summary, this body of work highlights the ruggedness of protein folding energy landscapes, including unique features for structurally homologous proteins, and demonstrates directly that the success of protein folding is sensitive to how the protein is introduced to its folding energy landscape.
DOI: 10.17632/5r3chsd873
title: EEG-MI数据集

description: EEG-MI实验数据集
DOI: 10.6084/m9.figshare.25048673.v1
title: <b>Evaluating the effect of the addition of Nano-Cellulose fibers on certain properties of heat-cured acrylic resin denture base material</b>

description: In this paper, we improved the impact strength, transverse strength, surface hardness, surface roughness, and color stability of heat-cured acrylic denture base material when Nano-Cellulose fibers were added to it, this was benefits for the patient's quality of life. Throughout determine the appropriate percentage of cellulose Nano-fibers placement.
DOI: 10.17608/k6.auckland.19524733.v1
title: Raw Dataset in C3D

description: This package contains the raw datasets collected from the motion capture experiments in C3D format of both left and right limbs of walking and running during a pre 5k and post 5k run.
DOI: 10.6084/m9.figshare.20489916.v4
title: A plastid phylogenomic framework for the palm family (Arecaceae)

description: Sequence matrices and phylogenetic trees of the plams.
DOI: 10.6084/m9.figshare.25494955.v1
title: Core W03 in NYS

description: Datases of sediment core collected in north Yellow Sea.
DOI: 10.6084/m9.figshare.28147421.v1
title: Enhancing Healthcare Transparency: Leveraging Machine Learning, GIS Mapping and Power BI for Private Hospital Insurance Claims Analysis

description: This project focuses on developing a machine learning-driven system to classify hospital claims and treatment outcomes, offering a second opinion on healthcare costs and decision-making for insurance claims and treatment efficacy.Key Features and Tools:<b>Machine Learning Algorithms:</b> Leveraging <b>Python (pandas, numpy, scikit-learn)</b> for predictive modeling to assess claim validity and treatment outcomes.<b>APIs Integration:</b> Used <b>Google Maps API</b> to retrieve and map the <b>locations of private hospitals</b> in Malaysia.<b>GIS Mapping Dashboard:</b> Created a <b>GIS-enabled dashboard</b> in <b>Microsoft Power BI</b> to visualize private hospital distribution across Malaysia, aiding healthcare planning and analysis.<b>Advanced Analytics Tools:</b> Integrated <b>Microsoft Excel, Python</b>, and <b>Google Collab</b> for data processing and automation workflows.
DOI: 10.6084/m9.figshare.28660109.v1
title: Dataset - effects of sunlight on mortality.xlsx

description: Data used in Parkhouse et al. The effects of sunlight exposure on mortality: a systematic review of epidemiological studies.
DOI: 10.6084/m9.figshare.29149625.v1
title: Material Suplementario 1: Detalle de Imágenes Médicas Utilizadas

description: Material Suplementario 1: Detalle de Imágenes Médicas Utilizadas
DOI: 10.6084/m9.figshare.25930405.v1
title: Kuisioner Penerimaan Vaksin Booster COVID-19 dan Hasil Uji Validasinya

description: The file contains the questionnaire for assessing the acceptance of COVID-19 booster vaccine in Indonesian population and the results of its validation.
DOI: 10.6084/m9.figshare.5127595.v1
title: Supplementary Material for: Recombinant Human Growth Hormone Plus Recombinant Human Insulin-Like Growth Factor-1 Coadministration Therapy in Short Children with Low Insulin-Like Growth Factor-1 and Growth Hormone Sufficiency: Results from a Randomized, Multicenter, Open-Label, Parallel-Group, Active Treatment-Controlled Trial

description: <b><i>Background/Aims:</i></b> Growth hormone (GH) and insulin-like growth factor-1 (IGF-1) both contribute to growth. To determine if recombinant human (rh)GH + rhIGF-1 therapy is more effective than rhGH alone to treat short stature, we assessed the efficacy and safety of coadministered rhGH + rhIGF-1 in short children with GH sufficiency and low IGF-1. <b><i>Methods:</i></b> In a 3-year, randomized, multicenter, open-label trial, patients with height SD score ≤−2.0 and IGF-1 SD score ≤−1.0 for age and sex, and with stimulated GH ≥10 ng/ml for age and sex, were randomized to receive (all doses in µg/kg/day): 45 rhGH alone (group A), 45 rhGH + 50 rhIGF-1 (group B), 45 rhGH + 100 rhIGF-1 (group C) or 45 rhGH + 150 rhIGF-1 (group D). Height velocity (HV) and Δ height SD score were measured. <b><i>Results:</i></b> The first-year HV (modified intention-to-treat population) was 9.3 ± 1.7 cm/year (group A), 10.1 ± 1.3 cm/year (group B), 9.7 ± 2.5 cm/year (group C) and 11.2 ± 2.1 cm/year (group D) (p = 0.001 for groups A vs. D). This effect was sustained, resulting in a height SD score improvement during the second and third years. Most treatment-emergent adverse events were mild and transient. <b><i>Conclusion:</i></b> In children with short stature, GH sufficiency and low IGF-1, coadministration of rhGH/rhIGF-1 (45/150 µg/kg) significantly accelerated linear growth compared with rhGH alone, with a safety profile similar to the individual monotherapies.
DOI: 10.17632/6mgjdby536
title: MoSC_ComMaterSci_processed

description: *.dat files that were used to plot the graphs
DOI: 10.17632/79shk8f79t
title: Data for: Co-simulation of Electricity Distribution Networks and Peer to Peer Energy Trading Platforms

description: This contains the data from our paper submitted to IJEPES: "Co-simulation of Electricity Distribution Networks and Peer to Peer Energy Trading Platforms" B. P. Hayes, S. Thakur, J. G. Breslin The network data is taken from the IEEE European LV Test Feeder See here for details: http://sites.ieee.org/pes-testfeeders/resources/ "demand_profiles" contain the demand profiles for each individual residential user connected at LV "EV_profiles" contains the electric vehicle demands for each user "PV_profiles" contains the photovoltaic panel generation profiles for each user "transactions_final" contains a record of the P2P trading platform buy/sell transactions, after solving the distributed double auction described in the paper.
DOI: 10.17632/nn6tj4md78
title: Table of articles on economic-ecological decoupling 1990-2019

description: The table shows the results from a bibliometric survey conducted in two phases. Both surveys were done using a boolean search in Web of Science. The survey structure was: terms “decoupling”, “economic” and “environment” appear in the Title or Topic (Topic includes search within Title, Abstract, Author Keywords, and Keywords Plus®). The search was restricted to a period between years 1990–2019. The first survey was done on March 5th, 2019. The survey returned a total of 423 articles. As we were looking for empirical evidence, we left out of scope articles presenting scenarios, models and extrapolations, and articles presenting deeper analyses of previously presented empirical material. Out of the 423 articles 282 were out of scope, which left 141 articles to be reviewed. In order to complete the results for 2019, a second survey with the same parameters was conducted on January 2nd, 2020 and the search included the rest of 2019. It returned a total of 78 articles, out of which 35 were out of scope (3 articles from conference proceedings were not found and 3 articles were duplicates with first survey), which left 37 articles to be reviewed. In total 179 articles were reviewed. The table presents these 179 articles as follows. In sheet ”search results”, each line presents one article: column A – year of publication column B – title of article column C – publication column D – DOI or other web-link column E – author(s) column F – geographical scope of article (International – National – Local) column G – location studied in the article (if applicable) column H – economic scope (Economy-wide – Several sectors – One sector) column I – economic sector (if applicable) column J – years studied in the article (if applicable) column K – evidence of decoupling found (Yes – No) column L – evidence of absolute decoupling found (Yes/No; if Yes, also brief description of between which indicators decoupling found) In addition, sheet ”absolute” presents a list of articles with findings of absolute decoupling, sheet ”absolute impact” a list of articles with findings of absolute impact decoupling, and sheet ”absolute resource” a list of articles with findings of absolute resource decoupling. The sheet ”absolute resource” also further indicates articles limited to a sectoral study (column M) and to a geographical location (column N).
DOI: 10.6084/m9.figshare.12154233.v1
title: Supplementary Data for Bennu gravity field analysis

description: This dataset contains supporting information for the paper: Scheeres et al., Heterogenous mass distribution of the rubble-pile asteroid (101955) Bennu, submitted to Science (4/2020). <br><br>It includes the Bennu shape model used to perform our analysis in *.obj format, consisting of vertices and face definitions. <br>It includes a Matlab file giving the spacecraft-derived gravity field for asteroid Bennu. This file was created by the OSIRIS-REx Radio Science Working Group Team, based on analysis performed at the Jet Propulsion Laboratory. In addition to the gravity field coefficients, the file also contains the associated covariance and other data related to the gravity field solution.
DOI: 10.25452/figshare.plus.25330501.v1
title: A dataset of over one thousand computed tomography scans of battery cells

description: 1015 commercially available batteries were scanned using a X-ray computed tomography system. These scans were processed into a set of images that capture the major axes of the battery. For cylindrical cells, these are radial and axial views of the battery. For pouch and prismatic cells, these are x-y, x-z, and y-z views of the battery.This dataset is available under a CC-BY-NC-SA-4.0 license.<br><b>500</b> 2170 cylindrical cells (114GB)<b>400</b> 18650 cylindrical cells (85GB)<b>50</b> 18650 sodium-ion cylindrical cells (10.4GB)<b>25</b> 2170 high-energy density cylindrical cells (5.8GB)<b>25</b> 4680 cells (4.4GB)<b>10</b> Pouch cells (2.0GB)<b>5</b> Prismatic cells (2.2GB)<i>For additional details about this dataset, including the directory structure of the dataset and details of our methods, see our data paper "A dataset of over one thousand computed tomography scans of battery cells" at </i><i>https://doi.org/10.48550/</i><i>arXiv.2403.02527</i>
DOI: 10.6084/m9.figshare.1408803.v1
title: Bouba Kiki et al over several samples from different populations

description: data set from across cultures. Data collected via lab based research and via MTurk.
DOI: 10.6084/m9.figshare.24146556.v1
title: cinema-ot example dataset

description: Example dataset for CINEMA-OT. Obtained from https://github.com/vandijklab/CINEMA-OT
DOI: 10.6084/m9.figshare.3565434.v1
title: Appendix A. A list of sources of literature for compiling the present-day fish species list of the Colorado River Basin.

description: A list of sources of literature for compiling the present-day fish species list of the Colorado River Basin.
DOI: 10.17632/fx29crw2fv
title: Resilience to chronic stress is characterized by circadian brain-liver coordination

description: Background: Chronic stress has a profound impact on circadian regulation of physiology. In turn, disruption of circadian rhythms increases the risk of developing both psychiatric and metabolic disorders. To explore the role of chronic stress in modulating the links between neural and metabolic rhythms, we characterized the circadian transcriptional regulation across different brain regions and liver as well as serum metabolomics in mice exposed to chronic social defeat stress, a validated model to study depressive-like behaviors.
Methods: Male C57BL/6J mice underwent chronic social defeat stress, and subsequent social interaction screening identified distinct behavioral phenotypes associated with stress resilience and susceptiblility. Stressed mice and their control litermates were sacrificed every 4 hr over the circadian cycle for comprehensive analyses of the circadian transcriptome in the hypothalamus, hippocampus, prefrontal cortex, and liver, alongside assessments of the circadian circulatory metabolome.
Results: Our data demonstrates that stress adaptation is characterized by reprogramming of the brain as well as hepatic circadian transcriptome. Stress resiliency is associated with an increase in cyclic transcription in the hypothalamus, hippocampus, and liver. Furthermore, cross-tissue analyses unveiled that resilient mice have enhanced transcriptional coordination of circadian pathways between the brain and the liver. Conversely, susceptibility to social stress resulted in a loss of cross tissue coordination. Circadian serum metabolomic profiles corroborate the transcriptome data, highlighting that stress-resilient mice gain circadian rhythmicity of circulating metabolites, including bile acids and sphingomyelins. 
Conclusion: This study reveals that resilience to stress is characterized by enhanced metabolic rhythms and circadian brain-liver transcriptional coordination.
DOI: 10.6084/m9.figshare.12179925.v1
title: LinkPhinder benchmarking splits

description: Benchmarking splits used to evaluate the LinkPhinder and other protein phosphorylation prediction models. <br>The XY numbers in the benchmark folder names reflect the train-test data ratio (e.g. 'benchmark9010' means the training and testing data are 90% and 10%, respectively, of the benchmark dataset). The nZ number then means the number of negatives per each positive (e.g. 'benchmark7030n10' means a 70/30 train/test split with ten negatives per each positive). PhosphoSitePlus (https://doi.org/10.1093/nar/gku1267) was used as the benchmark dataset in most cases, with the exception of folders tagged with 'cutillas20' (this is based on the kinase-substrate interaction dataset published in https://doi.org/10.1038/s41587-019-0391-9). The columns in the training and testing split files correspond to the kinase, site, and substrate respectively. The columns in the scores files correspond to the kinase uniprot accession id, the site, the substrate uniprot accession id and the LinkPhinder score respectively.
DOI: 10.6084/m9.figshare.22220698.v1
title: UV supplement

description: Statistical supplement for " <strong>Cellular metabolic pathways of aging in dogs: could p53 and SIRT1 be at play?"</strong>
DOI: 10.6084/m9.figshare.3529652.v1
title: Appendix B. Figures showing trait correlations between mortality rate and functional traits of tree species at five Neotropical forest sites.

description: Figures showing trait correlations between mortality rate and functional traits of tree species at five Neotropical forest sites.
DOI: 10.6084/m9.figshare.5418577.v1
title: Playbacks and response to modified feathers

description: Audio files of the playbacks used in our experiment testing the role of the P8 feather in communicating alarm, along with a datasheet tracking the response to the playback and associated variables. We also include R code parts of which were used in the analysis of results and the generation of figures.
DOI: 10.17632/kk5z4hdzh3
title: Indonesia's Rational Choice in the Nickel Ore Export Ban Policy

description: The dataset utilized in this research primarily consists of official economic and trade statistics related to Indonesia's nickel industry. It includes data from various sources such as the Ministry of Energy and Mineral Resources. These datasets encompass information on nickel production, export volumes, and values both before and after the implementation of the nickel ore export ban. Additionally, the dataset integrates global nickel market trends and pricing data obtained from international financial institutions and market analysis reports. This comprehensive dataset allows for a detailed examination of the economic impacts of the export ban, facilitating an understanding of how changes in policy have influenced both the domestic and global nickel markets.
DOI: 10.17632/y8n4mbmk6x
title: Rome, Italy: social, demographic, economic and political indicators

description: An original dataset concerning about 100 variables was appositely built for 132 urban districts (zone urbanistiche) with polling stations, out of 155, by which sub-municipal territories are further partitioned (Lelo et al., 2018; Tomassi, 2013). Data were collected by merging a number of sources: electoral files, the annual civil registry, the national census, transit databases, and in-depth surveys on public areas, local services, urbanization, and real estate
DOI: 10.6084/m9.figshare.13160351.v1
title: Litterfall and standing litter of Australian woody ecosystems

description: Field measurements of litterfall and standing litter collated for a continental metaanalysis of Australian necromass.<br>When using this dataset, please cite the relevant references and the following journal paper:<br>Neumann, M., Turner, L., Lewis, T., McCaw, L., Cook, G., Adams, M.A. 2021, Dynamics of necromass in woody Australian Ecosystems. Ecosphere, in press<br><b></b> <br>
DOI: 10.6084/m9.figshare.19560301.v2
title: S3.PDF

description: The results of PPI analysis are listed in S3
DOI: 10.17632/k3t9h984s5
title: FDI - Fractal Dimension Index

description: FDI is a MATLAB tool for computing the Fractal Dimension Index of reconstructed sources (dipoles) obtained from EEG data. The fractal dimension (FD) is a valuable tool for analysing the complexity of neural structures and functions in the human brain. To assess the spatiotemporal complexity of brain activations derived from electroencephalogram (EEG) signals, the fractal dimension index (FDI) was developed. This measure integrates two distinct complexity metrics: 1) integration FD, which calculates the FD of the spatiotemporal coordinates of all significantly active EEG sources (4DFD); and 2) differentiation FD, determined by the complexity of the temporal evolution of the spatial distribution of cortical activations (3DFD), estimated via the Higuchi FD [HFD(3DFD)]. The final FDI value is the product of these two measurements: 4DFD × HFD(3DFD). We introduce an open-source MATLAB software named FDI for measuring FDI values in EEG datasets. By using CUDA for leveraging the GPU massive parallelism to optimize performance, our software facilitates efficient processing of large-scale EEG data while ensuring compatibility with pre-processed data from widely used tools such as Brainstorm and EEGLab. The FDI toolbox allows neuroscientists to readily apply FDI to investigate cortical activity complexity within their own studies.
DOI: 10.17632/z2s7f9xysy
title: Work Addiction Predictors and Adverse Psychological Effects

description: Workaholism negatively impacts individuals' personal and social well-being. This study examined predictors of workaholism and differences between work-addicted and non-addicted managers and entrepreneurs using eight psychological measures. Of 200 participants, 29% were classified as workaholics based on the Bergen Work Addiction Scale (BWAS). Workaholics differed significantly from non-addicted individuals on all psychological measures, with poorer physical and mental health and sleep quality. The findings suggest that using tools like the BWAS can aid in identifying workaholism and guiding prevention efforts by addressing its predictors.
DOI: 10.6084/m9.figshare.1285313.v1
title: RDM Support - basic training course for information specialists

description: RDM Support is a basic training course in research data management (support) for information specialists. The training course was developed by Mariëtte van Selm for the information specialists of the Library of the University of Amsterdam (UvA), within the framework of the RDM Support project (2013-2015). The training course was held from January to April 2014.
DOI: 10.6084/m9.figshare.19336364.v1
title: [UPDATE] Voice changes across the menstrual cycle in response to masculinized and feminized man and woman

description: <b>Objective:</b> Research has demonstrated that men prefer women’s voices with higher pitch and that women’s voices recorded at high compared to low fertility phases of the menstrual cycle are rated as more attractive. These findings suggest that voice conveys information relevant to reproductive success. Because voice attractiveness is higher during the high fertility phase and voice pitch positively predicts attractiveness ratings, it has been hypothesised that cyclical changes in vocal attractiveness are driven by changes in voice pitch. However, attempts to detect acoustic changes have produced mixed results. With the higher degree of ecological validity achieved by including social context (simulated interactions with men and women) and by recording voice in the three phases of menstrual cycles, the present study addresses limitations of previous research. <b>Methods:</b> Forty-eight naturally cycling women were recorded during the menstrual, late follicular (high fertility), and luteal phases while leaving voice messages to masculinized and femininized man and woman. <b>Results:</b> No cycle-related changes in pitch and pitch variability for the recordings directed to masculinized and femininized man and woman were detected. By including relationship status as predictor in additional models, higher-order interaction effects showed that single and partnered women displayed opposite cycle-related pitch changes directed only to women, but not men. <b>Conclusion:</b> The cycle-related voice changes found in the present study do not support the hypothesis that cyclic pitch variations represent an adaptive mechanism for attracting partners. We discuss cyclic changes in voice pitch in relation to intrasexual competition by taking into an account that the present study is likely underpowered for adequate testing the complex higher-order interactions.