cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24773205.v1
title: Soil incubation data of fencing and grazing grasslands with <sup>13</sup>C-glucose addition

description: This dataset records basic soil information and its corresponding incubation data from five pairs of fencing and grazing sites in the temperate grasslands of northern China.Ten soil samples were collected from fencing and grazing sites of five temperate grasslands on the Inner Mongolian Plateau, China, in August 2021. Before sampling, plant aboveground biomass was measured using the dry weighing method. At each site, soils of the top 20 cm layer were sampled and passed through a 2 mm sieve to remove visible stones, roots, and other plant debris. After homogenization, soil texture, SOC, and MBC content were measured. All soil samples were stored at -20 °C until the incubation experiment started.During the incubation, <sup>13</sup>C-labeled glucose addition treatments were performed and four replicates were conducted. Soil samples equivalent to 20 g air-dried soil were added to 250 ml mason jars. All soils were incubated in the dark at 25 °C and a relative humidity of 60% for 102 days. After a 7-day pre-incubation, <sup>13</sup>C-labeled glucose (99 atom% <sup>13</sup>C) was added at a dose of 0.4 mg C g<sup>-1</sup> soil. On days 1, 3, 6, 12, 19, 34, 47, 78, and 102 of the incubation, each jar was flushed with CO<sub>2</sub>-free air for 3 minutes. After that, the CO<sub>2</sub> emission rate was measured using an infrared gas analyzer (Li-8100A; Li-COR, USA) within 3 minutes from the headspace. The average cumulative respiration of the four replicates and its standard error (SE) are provided in the dataset. After the last gas measurement, soils were destructively harvested and stored at -80℃ for the subsequent soil carbon (C) pools measurements.The chloroform-fumigation-extraction method was used to determine MBC contents. The POC and MAOC content were assessed through the particle size fractionation method. <sup>13</sup>C isotope of each C pool were analyzed using an Isotope Ratio Mass Spectrometer (Delta V Advantage, ThermoFisher Scientific, America). Further, the contributions of glucose-derived C to the MBC, POC, and MAOC pools were calculated using the isotopic mixing model.
DOI: 10.60707/g46s-yj58
title: X-ray CT data for Bennu aggregate sample OREX-800128-0
DOI: 10.60707/wswe-0f82
title: Biconical FTIR reflectance spectra of round and flat faces of a particle of aggregate OREX-803124-0.
DOI: 10.60707/5861-mv85
title: 3d scan of OREX-800087-0
DOI: 10.6084/m9.figshare.13225262.v1
title: Microarray data Table

description: Total RNAs were isolated from Eer I- and NMS-873-treated MDA-MB-231 cells and analyzed by Human OneArray Plus Microarray (Zhuoli Biotech, Shanghai, China).
DOI: 10.60707/brk7-px44
title: X-ray CT data for Bennu particle OREX-800073-0
DOI: 10.60707/z4yp-y044
title: X-ray CT data for Bennu particle OREX-800134-0
DOI: 10.60707/esk8-v556
title: P and S Wave Seismic Velocity Measurement Data Bundle for Bennu Particle OREX-800123-0
DOI: 10.6084/m9.figshare.20164013.v1
title: Raw date Matz et al. JES 2022 Hydrogen-powered Electrochemically-driven CO2 Removal from Air Containing 400 to 5,000 ppm CO2

description: Raw data supporting figures in Matz et al., Journal of the Electrochemical Society, "Hydrogen-powered Electrochemically-driven CO2 Removal from Air Containing 400 to 5,000 ppm CO2" (2022)
DOI: 10.60707/23z8-4438
title: 3d SLS scan of OREX-800021-0
DOI: 10.60707/s2qg-6q60
title: Bennu aggregate and QL bulk elemetal analysis
DOI: 10.6084/m9.figshare.28501961.v1
title: <b>Cerebral hemodynamic responses during exercise: A systematic review</b>

description: The aim of this systematic review is to summarize the acute cerebral hemodynamic responses to exercise. PubMed, Web of Science, Cochrane Library and Clinical Trials databases were searched from inception until September 2024 by two independent reviewers for cross-sectional, cross-over and/or parallel group trials of an acute bout of exercise in adults with/without chronic diseases compared/not to a bout of exercise or a parallel group, monitoring cerebral blood flow in one of the predefined arteries (i.e., middle [MCAv], posterior, internal carotid, anterior, vertebral cerebral arteries). Data (mean±standard deviation [SD]) were extracted and change scores from the peak values during exercise (Δ=peak–baseline) were calculated for further comparisons using independent samples t test (P&lt;0.05 significant). Ninety-seven studies (1718 participants) were included. Results indicated that aerobic exercise led to greater increases in MCAv compared to resistance exercise (Δ9.4±5.9cm/sec Aerobic vs. Δ4.5±7.0cm/sec Resistance; P=0.001), and young participants presented greater increases in MCAv compared to older participants (Δ9.1±6.6cm/sec Young vs. Δ5.2±3.9cm/sec Older; P=0.015), while changes in the other CBF parameters to exercise were similar (P&gt;0.05 for all). In conclusion, aerobic exercise induces greater increases in MCAv compared to resistance exercise, whilst young subjects present greater increases in MCAv during exercise compared to older participants.
DOI: 10.60707/mvcp-8z29
title: 3d scan of large quick-look particle
DOI: 10.6084/m9.figshare.22769239.v1
title: Structural implications of SARS-CoV-2 Surface Glycoprotein N501Y mutation within receptor-binding domain [499-505] – computational analysis of the most frequent Asn501 polar uncharged amino acid mutations

description: The aim of this study was to evaluate the impact of the most frequent Asn501 polar uncharged amino acid mutations upon important structural properties of SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) Surface Glycoprotein RBD – hACE2 (human angiotensin-converting enzyme 2) heterodimer. Mutations N501Y, N501T and N501S were considered and their impact upon complex solubility, secondary motifs formation and intermolecular hydrogen bonding interface was analyzed. Results and findings are reported based on 50 ns run in Gromacs molecular dynamics simulation software. Special attention is paid on the biomechanical shifts in the receptor-binding domain (RBD) [499-505]: ProThrAsn(Tyr)GlyValGlyTyr, having substituted Asparagine to Tyrosine at position 501. The main findings indicate that the N501S mutation increases SARS-CoV-2 S-protein RBD – hACE2 solubility over N501T, N501 (wild type): SASAN501S=364.66±3.2842 nm2, SASAN501T=360±3.4156 nm2, SASAN501=359.56±3.6473 nm2. The N501Y mutation shifts α-helix S-protein RBD [366-370]: SerValLeuTyrAsn into π-helix for <i>t</i> &gt; 38.5 ns. An S-protein RBD [503-505]: ValGlyTyr shift from 310-helix into a turn is observed due to the N501Y mutation in <i>t</i> &gt; 33 ns. An empirical proof for the presence of a Y501-binding pocket, based on RBD [499-505]: PTYGVGY Cα’s RMSF peak formation is presented. There is enhanced electrostatic interaction between Tyr505 (RBD) phenolic -OH group and Glu37 (hACE2) side chain oxygen atoms due to the N501Y mutation. The N501Y mutation shifts the Gly502S-ProteinN-H…O=CLys353hACE2 hydrogen bond into permanent polar contact; E(Gly502S-ProteinN-H…O=CLys353hACE2)N501Y=4.816210332kcal/mol; E(Gly502S-ProteinN-H…O=CLys353hACE2)N501=3.909532232kcal/mol.
DOI: 10.6084/m9.figshare.21087775.v1
title: gastritis-cancer transformation RNA-seq data

description: RNA-Seq data of blood and tissues during gastritis-carcinoma transformation.
DOI: 10.6084/m9.figshare.28494230.v1
title: FCS files (polyploidy of R. nasutus callus)

description: Raw data for "Polyploid induction of Rhinacanthus nasutus callus".<br>(T1 = 0.00% colchicine, 24 h; T2 = 0.00% colchicine, 48 h; T3 = 0.05% colchicine, 24 h; T4 = 0.05% colchicine, 48 h; T5 = 1.00% colchicine, 24 h; T6 = 1.00% colchicine, 48 h; T7 = 0.20% colchicine, 24 h; T8 = 0.20% colchicine, 48 h)
DOI: 10.6084/m9.figshare.3556527.v1
title: Appendix A. Experimental treatments and efficacy: intertidal physical stress, herbivores, and nutrients.

description: Experimental treatments and efficacy: intertidal physical stress, herbivores, and nutrients.
DOI: 10.60707/7h3b-xk29
title: EA-IRMS C and N isotopic analysis of Bennu Aggregate Water Extract sample OREX-803001-112 and Murchison control sample
DOI: 10.60707/czpn-w821
title: 3d scan of OREX-800087-0
DOI: 10.6084/m9.figshare.25209152.v2
title: Digital Compendium for: Herbicide alternatives in boreal and northern temperate forests of Ontario and Quebec: A compendium of studies

description: We present a digital compendium of studies assessing the effectiveness of vegetation management treatments in boreal and northern temperate forests of Ontario and Quebec, Canada. The compendium includes studies meeting specific criteria such as following responses for five years or longer, involving silvicultural experiments, and focusing on tree or vegetation-related metrics. The compendium, classified using a bioregional ecological framework, is open-access and aims to inform decision-making regarding herbicide alternatives and identify areas for further research.
DOI: 10.60707/3brh-2b78
title: LCMS Bundle - N-heterocycles in the Bennu sample OREX-800044-101
DOI: 10.60707/xggq-vm96
title: SEM/EDX of a 250 µm particle of Bennu (OREX-803141-0)
DOI: 10.60707/3092-eg50
title: OREX-803102-105 Olivine, magnetite, and carbonate analyses with EMPA
DOI: 10.60707/x6p7-h914
title: OREX-803085-0
DOI: 10.60707/zx53-g532
title: OREX-803088-0
DOI: 10.6084/m9.figshare.23681274.v1
title: Drive Test Logfile for MRT Putrajaya Line 06/04/2023

description: Logfile for drive test conducted along MRT Putrajaya Line Railway Track. Contain information on RSRP, RSRQ, RSSI, SNR, CQI and other contextual data
DOI: 10.60707/m26k-zg30
title: 40Ar/39Ar geochronology and thermochronology
DOI: 10.60707/m53m-r760
title: LCMS Bundle - N-heterocycles in the Bennu sample OREX-800044-101
DOI: 10.60707/b557-vf65
title: Thermal diffusivity measuremnts by Lock-in thermography technique of particle of interest OREX-803009-102 (polar distribution data)
DOI: 10.15468/dl.taktw5
title: Occurrence Download

description: A dataset containing 39577 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Litoria caerulea (White, 1790)"
 ]
}

 The dataset includes 39577 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001445-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60707/gd0s-h292
title: Thermal diffusivity measuremnts by Lock-in thermography technique of particle of interest OREX-803009-102 (polar distribution data)
DOI: 10.6084/m9.figshare.27210951.v1
title: Comprehensive analysis of human keratinocyte and opportunistic pathogenic <i>Candida</i> interactions

description: The skin provides extensive protection against several pathogens. On its surface epithelial cells, or keratinocytes, respond to microbial stimuli primarily through the secretion of antimicrobial peptides and inflammatory cytokines. However, their alarming function is restricted to invading pathogenic organisms. Recent microbiome studies suggest that <i>Candida</i> species are natural colonisers of the human skin. However, discrepancies are present regarding the presence of <i>C. albicans</i> on the healthy skin, that is also frequently associated with cutaneous candidiasis. Therefore, here we aimed to investigate human keratinocyte responses to <i>C. albicans</i> and to another <i>Candida</i> species, <i>C. parapsilosis</i> - that is more likely to resemble skin commensals - in order to assess and compare the nature of skin epithelial cell responses to <i>Candida</i> species. Our results indicate that humoral, cellular and metabolic activities are more pronounced in the presence of <i>C. albicans</i>, than <i>C. parapsilosis</i>, suggesting a naturally occurring alarming response against this species.
DOI: 10.60707/k0dp-cp12
title: AIVA image of OSIRIS-REx avionics deck, TAGSAM, & lid from north window
DOI: 10.6084/m9.figshare.22215658.v1
title: Data_Patent_Delphi.xlsx

description: Consensus definition: For clinical scenarios, consensus is achieved if ≥ 75% of the experts proposed the same treatment strategy. For decision criteria, consensus is achieved if ≥ 75% of the experts voted concordant on the 5-point Likert scale, i.e., disagreed (1 or 2) or agreed (4 or 5).
DOI: 10.6084/m9.figshare.4630165.v1
title: scripts B

description: Movie scripts starting with B
DOI: 10.6084/m9.figshare.24807780.v1
title: <b>Supplemental Table S2. </b>The values of <i>Me</i> and significance threshold for all chromosomes.

description: The values of <i>Me</i> and significance threshold for all chromosomes.
DOI: 10.6084/m9.figshare.27908325.v1
title: Source Data: Bumblebees flexibly adjust learning and decision strategies to sensory information content in a multi-cue foraging task

description: Source Data for the manuscript: <b>Bumblebees flexibly adjust learning and decision strategies to sensory information content in a multi-cue foraging task</b>The data is split into separate groups:1) Spectral measurements and calculations of colour stimuli: 2) .csv files with l<b>earningCurves </b>of animals in all conditions, organised in blocks (fraction of correct choices, out of 5 correct and as many uncorrect choices as were made to obtain 5 correct ones). The suffix _col denotes training in single attribute conditions, the suffic _shape denotes all experiments with cue combinations in which shapes were used, and no suffix contains all experiments with cue combinations in which patterns were used. The respective colours in the cue combination experiments are provided in the title of the files.3) .csv <b>conflictChoices</b> contain the choices for either colour or pattern / shape attributes in the conflict tests, as well as the second attribute in the second test. The suffix _single denotes training in single attribute conditions, the suffic _shape denotes all experiments with cue combinations in which shapes were used, and no suffix contains all experiments with cue combinations in which patterns were used. In the single conditions, no conflict tests were performed, but simple tests with one attribute, though following the same methodology.3) .csv <b>naiveChoices</b> contain the choices for one of the two combinations of colour and shape / pattern in the naive tests, or either colour or type of shape / pattern in the single attribute tests. The suffix _single denotes training in single attribute conditions, the suffic _shape denotes all experiments with cue combinations in which shapes were used, and no suffix contains all experiments with cue combinations in which patterns were used. <br>
DOI: 10.6084/m9.figshare.27619785.v1
title: Appendix 2: Diversity of critical minerals deposits in the North American Cordilleran alkaline-igneous belt in southern Colorado, New Mexico, Texas and Mexico

description: Chemical analyses
DOI: 10.6084/m9.figshare.25567977.v1
title: CNH4+ trajectories, MLatom

description: CNH<sub>4</sub><sup>+</sup> Landau-Zener NAMD trajectories ran in MLatom:1) AIQM1/LZSH2)CASSCF/LZSH
DOI: 10.6084/m9.figshare.3562443.v1
title: Supplement 1. Code samples.

description: File List code_samples.zip (MD5: e24ebd7be118a93db3bf96330a0cc727) Description Code to simulate and fit many of the extensions discussed in our paper.
DOI: 10.6084/m9.figshare.4154271.v1
title: Supplementary data from Goffin's cockatoos make the same tool type from different materials

description: This excel file contains raw data of the experiment
DOI: 10.6084/m9.figshare.22730415.v1
title: “Razors always speak louder”: the topic of self-harm in online communities

description: This study aims to understand how Brazilian online communities portray the topic of self-harm, discussing its particularities, the narratives produced, the interactions established, and the purpose of the digital space. It was based on qualitative research in the digital environment from the silent observation of Facebook online communities, which were selected considering the number of participants and their interaction. The observation followed a previous script and posts were recorded by screenshots. Publications were organized in the following categories: characterization and functioning of the community; self-directed violence (self-harm and suicide); motivations for the act; strategies to prevent the act; and loving experience. Results showed that the communities were positively guided and defended self-harm without any regulation, which guaranteed the free expression of their participants and detailed reports describing the methods and objects used, the level of efficiency, and how to hide the wounds. Although participants shared the fear of being discovered, they published images of their own scars and wounds, materializing discourses of suffering on the Internet and glamorizing the cuts, the feeling of pleasure, and the sense of belonging, since they are also identity marks. Our findings show that young people who harm themselves share their suffering experiences with other young people without the mediation of a professional, therefore, considering its possible effects on mental health is necessary.
DOI: 10.6084/m9.figshare.28424838.v1
title: Additional file 1 of Utilization of mental health services and associated factors among residents of southern Ethiopia; a community based cross-sectional study

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.19188443.v1
title: Respiration rate and thermal limits of acclimated Andrias davidianus

description: Temperature and diet acclimation modify the acute thermal performance of the largest extant amphibian
DOI: 10.6084/m9.figshare.4479476.v1
title: Cardisoma carnifex population density data

description: The first file lists the number of crabs per quadrat along the transect meter for all eight sites. The second file consolidates the information into total number of crabs per site.<br>
DOI: 10.6084/m9.figshare.28505435.v1
title: Assemblies

description: This study investigates the presence and spread of antibiotic-resistant <i>E. coli</i> in a Swedish urban water system, with much higher levels near a wastewater treatment plant (WWTP), suggesting its role in spreading these bacteria. All tested bacterial strains were resistant to multiple antibiotics, with many strains assigned to lineages linked to human infections. This highlights the need for better wastewater treatment to reduce environmental and public health risks.
DOI: 10.6084/m9.figshare.24175503.v1
title: The PSV models and age controls for the east African Lake composites from Lake Chala, Lake Victoria and Lake Malawi

description: The excel file contains the following datasetsPage 1: Summary of the lake datasets used in this work, and their key attributesPage 2: Summary of the PSV composites with the age model attached from the original work and that generated using BChronPage 3: List of the age control points used in generating the age models for these datasets<br>
DOI: 10.6084/m9.figshare.22362874.v1
title: Dataset on floral resources in Swedish grasslands, as part of an experiment studying the effects of drought, soil amendments and mowing (May-August 2021)

description: This dataset is part of the manuscript “Floral resources in Swedish grasslands remain relatively stable under an experimental drought and are enhanced by soil amendments if regularly mown” (Ecological Solutions and Evidence) by Nina Roth, Adam Kimberley, Daniela Guasconi, Gustaf Hugelius and Sara A. O. Cousins. Detailed information on the methods can be found in the manuscript and supplementary material.
DOI: 10.6084/m9.figshare.13477077.v5
title: Feng_CheCastaldo_2021_S1Data.zip

description: eBird data from the eBird Basic Dataset (May 2019 Update) and 50-stop data from the North American Breeding Bird Survey Dataset (BBS, version 2018.0) filtered to the US state of Massachusetts during the breeding seasons of 2005-2018. R-script covers the modeling methods and comparative analysis of four indices of annual relative abundance derived from these BBS and eBird datasets.
DOI: 10.6084/m9.figshare.26045674.v4
title: Rural-urban transformation data of China.xlsx

description: RUTD, CDθ, PU, LU, and EU by prefectures in 1990, 2000, 2010, and 2020;Rural-urban transformation patterns by prefectures in 1990 , 2000, 2010, and 2020;The relationship of DWBI to RUTD, CDθ, and RUTP at the provincial scale.
DOI: 10.6084/m9.figshare.13619309.v1
title: Supplementary Material files of G3

description: Supplementary Material files of G3 article, including Figire S1 and Genetype and Phenotype data.
DOI: 10.6084/m9.figshare.1566849.v1
title: Dataset on optimizing Semantic Pointer representations

description: Raw simulation data used in the paper "Optimizing Semantic Pointer Representations for Symbol-like Processing in Spiking Neural Networks".
DOI: 10.6084/m9.figshare.23709072.v1
title: Data and code for: <em>Understanding the chemodiversity of plants: Quantification, variation and ecological function</em>

description: Data and R-code for: <em>Understanding the chemodiversity of plants: Quantification, variation and ecological function.</em>
<br>
Two main files are associated with this. PetrenEtalData.csv is a csv-file that contains the dataset from the from the systematic literature review part of the paper. PetrenEtalScript.R is an R-script with code for producing figures of the dataset.
<br>
The third file, README.txt, contains more details of the data and code.
DOI: 10.6084/m9.figshare.28505879.v1
title: Raw data and project questionnaires

description: <b>Abstract:</b>Introduction:<br>The global COVID-19 pandemic drove significant interest in alternative options for infection prevention and treatment. Among these alternatives, natural remedies (NR) gained considerable attention. This study aims to explore the prevalence, usage patterns, and perceptions regarding NRs for the prevention and treatment of COVID-19 among adults in the United Arab Emirates.Methods:<br>A cross-sectional study was conducted between February and March 2021 using a self-administered questionnaire distributed through social media platforms. The study targeted UAE residents aged 18 and above. Data collected from the questionnaires were analysed using SPSS version 26.Results:<br>A total of 382 responses were analyzed. Before the pandemic, 74.6% (n = 285) used NRs for disease prevention and/or treatment, but only 27.7% (n = 106) used them for COVID-19 prevention, 3.9% (n =15) for treatment, and 11.8% (n =45) for both. Gender (p = 0.011), and age (p = 0.045) were significantly associated with NR use against COVID-19. Most participants believed that NRs had low efficacy in preventing (41.6%, n = 159) or treating (52.9%, n = 202) COVID-19. Among those with a COVID-19 history, 42.9% (n = 24) believed NRs made quarantine unnecessary, compared to 25.6% (n = 79) without such a history. No significant difference in perceived risk was found between NR users and non-users.Conclusion:<br>The low prevalence of NR use for COVID-19 prevention and/or treatment in the UAE emphasizes the need for public health campaigns to promote their use as adjunct therapy and for further research to evaluate their efficacy and safety.
DOI: 10.6084/m9.figshare.1272803.v1
title: All True Bugs

description: Spread sheet contains presence/absence data of true bugs (Hemiptera: Heteroptera) assessed using flight-interception traps (FITs) on 121 oak trees in Bavaria, Germany.
DOI: 10.6084/m9.figshare.28067108.v1
title: FLIM dataset for GSLab

description: FLIM experimental data used for figure 2 of the manuscript.
DOI: 10.6084/m9.figshare.12791765.v1
title: Gene trees

description: Bootstrapped gene trees for all nitrogen-cycling genes included in this study. Trees were generated using RAxML-NG with at least 1000 bootstraps or until bootstraps converged, as determined using an MRE-based convergence test as implemented within RAxML-NG, using a cutoff of 0.03.
DOI: 10.6084/m9.figshare.17091293.v1
title: Assembly FASTA Files

description: FASTA sequences of Pilot HATUA isolates from Kenya and Uganda.