cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.24435/materialscloud:b7-xq
title: FlashMD: long-stride, universal prediction of molecular dynamics

description: Molecular dynamics (MD) provides insights into atomic-scale processes by integrating over time the equations that describe the motion of atoms under the action of interatomic forces. Machine learning models have substantially accelerated MD by providing inexpensive predictions of the forces, but they remain constrained to minuscule time integration steps, which are required by the fast time scale of atomic motion. In this work, we propose FlashMD, a method to predict the evolution of positions and momenta over strides that are between one and two orders of magnitude longer than typical MD time steps. We incorporate considerations on the mathematical and physical properties of Hamiltonian dynamics in the architecture, generalize the approach to allow the simulation of any thermodynamic ensemble, and carefully assess the possible failure modes of such a long-stride MD approach. We validate FlashMD's accuracy in reproducing equilibrium and time-dependent properties, using both system-specific and general-purpose models, extending the ability of MD simulation to reach the long time scales needed to model microscopic processes of high scientific and technological relevance. 

This repository contains the scripts used for the training and analysis of the FlashMD models presented in the associated paper/preprint.
DOI: 10.17605/osf.io/kn6u5
title: The psychosocial implication of childhood constipation on the children and family: A scoping review protocol

description: Extended Data to ensure Data Availability for Submission of Scoping Review Protocol to HRB Open
DOI: 10.15468/dl.qazmbk
title: Occurrence Download

description: A dataset containing 94778 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Phoronida"
 ]
}

 The dataset includes 94778 records from 353 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011601-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15046658
title: YouTube Dataset on climate change discussions: COP27, IPCC, climate refugees and Doñana

description: CLINT Data

This repository contains the YouTube data used in the project CLINT and the paper  "A cross-platform analysis of polarization and echo chambers in climate change discussions"  

The YouTube video ids were extracted from the Tweets related to four different datasets: COP27, IPCC, Climate Refugees and Doñana (https://zenodo.org/records/14095218).

 




 
IPCC
Doñana
Climate Refugees
COP27


Number of videos
154
31
213
610
DOI: 10.5281/zenodo.15046657
title: YouTube Dataset on climate change discussions: COP27, IPCC, climate refugees and Doñana

description: CLINT Data

This repository contains the YouTube data used in the project CLINT and the paper  "A cross-platform analysis of polarization and echo chambers in climate change discussions"  

The YouTube video ids were extracted from the Tweets related to four different datasets: COP27, IPCC, Climate Refugees and Doñana (https://zenodo.org/records/14095218).

 




 
IPCC
Doñana
Climate Refugees
COP27


Number of videos
154
31
213
610
DOI: 10.15468/dl.p4me8d
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Dioscorea stellaris"
 ]
}

 The dataset includes 16 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011620-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dhr64r
title: Occurrence Download

description: A dataset containing 12514 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gastrotricha"
 ]
}

 The dataset includes 12514 records from 210 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011619-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30731921
title: Supplementary Material for: Nationwide Epidemiology and Genetic Background of Persistent Nonsyndromic Congenital Hyperinsulinism in Slovakia

description: Introduction. Congenital hyperinsulinism (CHI) is the most common cause of persistent hypoglycaemia in children. At least 10 monogenic causes and 28 syndromes have been reported to be associated with CHI. The aim of this study was to evaluate epidemiologic data and genetic background of persistent nonsyndromic CHI in Slovakia.
Methods. Based on data from the nationwide DIABGENE database of children with persistent hyperinsulinemic hypoglycaemia, 28 children were diagnosed with nonsyndromic CHI during the years 2005 – 2024. DNA analysis of the most common CHI genes was performed. Epidemiology of CHI was calculated using Slovak demographic data.
Results. The overall incidence of nonsyndromic CHI in Slovakia over the last 20 years was 1:39,804 live births. In 2024, the prevalence was 1:161,802 children younger than 19 years. A genetic cause was identified in 9 children (32%), the most common was CHI due to mutation in ABCC8 gene (n=4), followed by the KCNJ11 (n=2), HNF4A (n=2) and HK1 (n=1) genes. In diazoxide-unresponsive CHI (n=6), 5 children had a mutation in the ABCC8 or KCNJ11 genes and one in the HK1 gene. Four children had the focal form based on the paternally inherited recessive mutation and underwent pancreatic surgery. 
Conclusion. Nonsyndromic CHI is a rare disease with nation-wide incidence in Slovakia of 1:39,804. Diazoxide-unresponsive CHI accounts for 21% of all the cases. A genetic cause was identified in 32% (100% in diazoxide-unresponsive) of children; mutations in the ABCC8 gene were the most prevalent. The type of mutation determines the most appropriate management strategy, including pancreatic surgery.
DOI: 10.6084/m9.figshare.30731921.v1
title: Supplementary Material for: Nationwide Epidemiology and Genetic Background of Persistent Nonsyndromic Congenital Hyperinsulinism in Slovakia

description: Introduction. Congenital hyperinsulinism (CHI) is the most common cause of persistent hypoglycaemia in children. At least 10 monogenic causes and 28 syndromes have been reported to be associated with CHI. The aim of this study was to evaluate epidemiologic data and genetic background of persistent nonsyndromic CHI in Slovakia.
Methods. Based on data from the nationwide DIABGENE database of children with persistent hyperinsulinemic hypoglycaemia, 28 children were diagnosed with nonsyndromic CHI during the years 2005 – 2024. DNA analysis of the most common CHI genes was performed. Epidemiology of CHI was calculated using Slovak demographic data.
Results. The overall incidence of nonsyndromic CHI in Slovakia over the last 20 years was 1:39,804 live births. In 2024, the prevalence was 1:161,802 children younger than 19 years. A genetic cause was identified in 9 children (32%), the most common was CHI due to mutation in ABCC8 gene (n=4), followed by the KCNJ11 (n=2), HNF4A (n=2) and HK1 (n=1) genes. In diazoxide-unresponsive CHI (n=6), 5 children had a mutation in the ABCC8 or KCNJ11 genes and one in the HK1 gene. Four children had the focal form based on the paternally inherited recessive mutation and underwent pancreatic surgery. 
Conclusion. Nonsyndromic CHI is a rare disease with nation-wide incidence in Slovakia of 1:39,804. Diazoxide-unresponsive CHI accounts for 21% of all the cases. A genetic cause was identified in 32% (100% in diazoxide-unresponsive) of children; mutations in the ABCC8 gene were the most prevalent. The type of mutation determines the most appropriate management strategy, including pancreatic surgery.
DOI: 10.6084/m9.figshare.30731924
title: Supplementary Material for: Bathrocephaly and serpentine fibula as underrated features of Osteogenesis Imperfecta type I: a case report

description: Introduction: Osteogenesis imperfecta (OI) comprises a heterogeneous group of skeletal dysplasias characterized mainly by bone fragility and propensity to fractures. The most common forms include classic types I, II, III, and IV, according to the classification of Sillence, caused by variants in the COL1A1 or COL1A2 genes. This report describes a case series of patients with OI type I confirmed by whole genome sequencing, highlighting the clinical and radiological manifestations of one atypical family.
Case Presentation: Six individuals (1M:5F), aged 8 months to 34 years at their first consultation, were enrolled. All were clinically classified as OI type I due to the presence of osteopenia associated with blue sclerae and bone fractures; four presented with short stature, two with hearing loss, and one with fragile teeth; molecular testing confirmed that all presented with heterozygous pathogenic or likely-pathogenic variants in the COL1A1 gene. In one family, an unusual presentation was observed in the patient and her daughter, both of whom presented with severe short stature (Z-score &lt; -6), abnormal skull shape (bathrocephaly), codfish vertebrae, bowing of the long bones in the lower limbs, and serpentine fibulas.
Conclusion: Bathrocephaly and serpentine fibula are rarely reported in classical OI types and are more frequently associated with other skeletal dysplasias, such as Hajdu-Cheney syndrome. This case report highlights the importance of recognizing underrated manifestations in OI and underscores the need for molecular confirmation.
DOI: 10.6084/m9.figshare.30731924.v1
title: Supplementary Material for: Bathrocephaly and serpentine fibula as underrated features of Osteogenesis Imperfecta type I: a case report

description: Introduction: Osteogenesis imperfecta (OI) comprises a heterogeneous group of skeletal dysplasias characterized mainly by bone fragility and propensity to fractures. The most common forms include classic types I, II, III, and IV, according to the classification of Sillence, caused by variants in the COL1A1 or COL1A2 genes. This report describes a case series of patients with OI type I confirmed by whole genome sequencing, highlighting the clinical and radiological manifestations of one atypical family.
Case Presentation: Six individuals (1M:5F), aged 8 months to 34 years at their first consultation, were enrolled. All were clinically classified as OI type I due to the presence of osteopenia associated with blue sclerae and bone fractures; four presented with short stature, two with hearing loss, and one with fragile teeth; molecular testing confirmed that all presented with heterozygous pathogenic or likely-pathogenic variants in the COL1A1 gene. In one family, an unusual presentation was observed in the patient and her daughter, both of whom presented with severe short stature (Z-score &lt; -6), abnormal skull shape (bathrocephaly), codfish vertebrae, bowing of the long bones in the lower limbs, and serpentine fibulas.
Conclusion: Bathrocephaly and serpentine fibula are rarely reported in classical OI types and are more frequently associated with other skeletal dysplasias, such as Hajdu-Cheney syndrome. This case report highlights the importance of recognizing underrated manifestations in OI and underscores the need for molecular confirmation.
DOI: 10.6084/m9.figshare.30731927
title: Supplementary Material for: Do fluoride-releasing restorative materials prevent the development of caries around restorations in deciduous and permanent teeth? A systematic review and meta-analysis

description: Introduction: The main cause of failure in restorations is the development of caries around restorations (CAR). Therefore, the aim of this study was to assess the evidence related to the development of CAR with fluoride-releasing restorative materials compared to non-fluoride releasing in deciduous and permanent teeth. Methods: Randomized clinical trials were included. Literature searches were conducted without language/data restrictions in 6 databases and in the grey literature in June 2024. ROB2 tool assessed the risk of bias. Through meta-analyses, expressed by the risk difference (RD) with a 95% confidence interval, the outcome was evaluated considering the follow-up period (12, 18-24 and ≥36 months), type of dentition and fluoride-releasing restorative materials, number of surfaces treated, and the type of dental isolation performed. Meta-regression models were applied with the above variables as moderators. The certainty of the evidence was assessed by GRADE. Results: Forty-six studies were selected. Among them, 29 presented some concerns and 9 showed high risk of bias. The type of dentition and dental materials, number of surfaces, and dental isolation did not influence the outcome (p&gt;0.05). Although after 36 months of follow-up, deciduous and permanent teeth restored with fluoride-releasing materials had a lower risk of CAR (RD -0.015 [-0.024, -0.006] p=0.002 I2=0%), the moderators did not influence this effect by meta-regression models. The certainty of the evidence ranged from low to moderate. Conclusion: Fluoride-releasing restorative materials were more effective in preventing CAR after 36 months of follow-up. However, this result should be interpreted with caution, considering the low to moderate certainty of the evidence, the included studies’ risk of bias, and the small risk difference.
DOI: 10.6084/m9.figshare.30731927.v1
title: Supplementary Material for: Do fluoride-releasing restorative materials prevent the development of caries around restorations in deciduous and permanent teeth? A systematic review and meta-analysis

description: Introduction: The main cause of failure in restorations is the development of caries around restorations (CAR). Therefore, the aim of this study was to assess the evidence related to the development of CAR with fluoride-releasing restorative materials compared to non-fluoride releasing in deciduous and permanent teeth. Methods: Randomized clinical trials were included. Literature searches were conducted without language/data restrictions in 6 databases and in the grey literature in June 2024. ROB2 tool assessed the risk of bias. Through meta-analyses, expressed by the risk difference (RD) with a 95% confidence interval, the outcome was evaluated considering the follow-up period (12, 18-24 and ≥36 months), type of dentition and fluoride-releasing restorative materials, number of surfaces treated, and the type of dental isolation performed. Meta-regression models were applied with the above variables as moderators. The certainty of the evidence was assessed by GRADE. Results: Forty-six studies were selected. Among them, 29 presented some concerns and 9 showed high risk of bias. The type of dentition and dental materials, number of surfaces, and dental isolation did not influence the outcome (p&gt;0.05). Although after 36 months of follow-up, deciduous and permanent teeth restored with fluoride-releasing materials had a lower risk of CAR (RD -0.015 [-0.024, -0.006] p=0.002 I2=0%), the moderators did not influence this effect by meta-regression models. The certainty of the evidence ranged from low to moderate. Conclusion: Fluoride-releasing restorative materials were more effective in preventing CAR after 36 months of follow-up. However, this result should be interpreted with caution, considering the low to moderate certainty of the evidence, the included studies’ risk of bias, and the small risk difference.
DOI: 10.5281/zenodo.17660928
title: Dataset of composts from the North Sea Region
title: Dataset of characteristics of 119 composts from the North Sea Region

description: This dataset compiles data of sixty-seven physical, chemical and biological characteristics measured by one single laboratory per characteristic, on 119 composts from the North Sea Region. The composts were collected from different projects, made by different composting practices and started from different feedstocks. The characteristics can offer valuable information for addition of the composts to soil or growing media. More information can be found in the different sheets of the files and in the manuscript "Amery, F., Quataert, P., Vandaele, E., Smeets, H., Kristensen, H.L., Loades, K., Körner, I., Willekens, K., 2026. Compost organic matter content varied five-fold and determined compost quality across 107 composts of the North Sea Region. Waste Manage. 210, 115259, https://doi.org/10.1016/j.wasman.2025.115259".
DOI: 10.5281/zenodo.17660929
title: Dataset of composts from the North Sea Region
title: Dataset of characteristics of 119 composts from the North Sea Region

description: This dataset compiles data of sixty-seven physical, chemical and biological characteristics measured by one single laboratory per characteristic, on 119 composts from the North Sea Region. The composts were collected from different projects, made by different composting practices and started from different feedstocks. The characteristics can offer valuable information for addition of the composts to soil or growing media. More information can be found in the different sheets of the files and in the manuscript "Amery, F., Quataert, P., Vandaele, E., Smeets, H., Kristensen, H.L., Loades, K., Körner, I., Willekens, K., 2026. Compost organic matter content varied five-fold and determined compost quality across 107 composts of the North Sea Region. Waste Manage. 210, 115259, https://doi.org/10.1016/j.wasman.2025.115259".
DOI: 10.5281/zenodo.17734912
title: Sandstone strength
DOI: 10.5281/zenodo.17734913
title: Sandstone strength
DOI: 10.15468/dl.gruh8s
title: Occurrence Download

description: A dataset containing 3530 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "OccurrenceStatus is Present",
 "TaxonKey is Hydrocotyle ranunculoides"
 ]
}

 The dataset includes 3530 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011622-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fqvsj5
title: Occurrence Download

description: A dataset containing 14048363 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((61.52487 35.25806,62.13574 32.8192,65.43525 30.98288,64.25106 30.30649,61.1454 30.71859,59.8759 29.24475,61.67247 27.61076,60.74092 25.57456,61.68271 24.80799,65.41545 24.6437,67.90727 25.52982,68.39312 27.68685,70.49363 28.57444,72.44407 32.8567,80.98744 27.14283,86.16975 25.62307,89.04903 26.0095,88.74933 24.82891,90.52724 24.3422,90.06478 23.29551,91.03887 20.66572,93.42061 17.87605,93.1616 15.96719,93.89526 15.18054,95.83251 16.49895,95.81423 18.88373,96.39316 18.47345,98.87368 18.96896,101.47837 20.55262,102.27374 21.94828,100.49257 22.85578,100.53278 23.67343,103.96621 24.93764,104.54136 25.56759,104.73085 26.17354,104.10241 27.30708,105.00753 29.39687,104.11397 30.60069,105.42037 32.20441,106.1748 34.7684,103.30227 38.41545,100.08066 39.85855,93.00629 39.97377,89.9109 39.03537,88.85681 38.17749,89.10603 37.31957,84.21138 36.22857,80.10264 36.84447,78.05782 36.35705,75.71181 38.18624,72.78709 38.03729,72.40386 39.0425,70.94208 39.27737,68.69605 37.98985,66.20038 38.42204,64.59397 37.89534,61.52487 35.25806),(95.12017 22.31185,95.43108 21.76189,95.15338 20.81699,95.12017 22.31185))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 14048363 records from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011604-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7vkmyw
title: Occurrence Download

description: A dataset containing 1095695545 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1095695545 records from 29790 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011562-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sdfbc6
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pavonia patuliloba Hochr."
 ]
}

 The dataset includes 57 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064883-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y8vvjs
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eviota korechika Shibukawa & Suzuki, 2005"
 ]
}

 The dataset includes 102 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068094-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qaetsk
title: Occurrence Download

description: A dataset containing 839 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Quercus glauca Thunb.",
 "HasGeospatialIssue is FALSE",
 "Year is 2000,2022",
 "HasCoordinate is TRUE",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 839 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140484-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vn8z6b
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Kerivoula whiteheadi Thomas, 1894)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 81 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068934-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-11688
title: Put' = Voie = [The way], no. 26 (February 1931)

description: [description english/roman)] Irregular frequency
DOI: 10.15468/dl.8u4h93
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Thorius pinicola Parra-Olea, Rovito, García-París, Maisano, Wake & Hanken, 2016)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 48 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068912-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.