cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/2j56x4vr83
title: Biofilm responsive proteins of Candida albicans

description: Present study represents the peptide mass data of proteins expressed during biofilm form growth of Candida albicans ATCC10231. 
Growth: Candida albicans standard strain ATCC 10231 was collected from microbial test culture collection (MTCC), Chandigarh and gowned on YPD medium (1% yeast extract, 2% peptone and 2% dextrose) at 30ºC used for routine growth and maintenance of the Candida albicans strain. Biofilm were formed in liquid RPMI-1640 medium on Micro-titer plate. 
Treatment: Overnight grown cells were harvested and washed four times with sterile distilled water. Then, pellet was re-suspended in phosphate buffer saline and incubated at 37ºC for 90 min for adhesion. Phosphate buffer saline were used to wash out non adhered cell. After 3 times of wash, adhered cells were incubated in liquid RPMI-1640 medium at 37℃ for 24 hrs. Cells were collected after washing the RPMI-1640 medium in sterile phosphate buffer saline.
Extraction: Protein extraction from both biofilm and control were done using alkaline lysis method where cells were lysed under high alkaline condition of sodium hydroxide containing Protease inhibitor cocktail (PIC). This solution is neutralized by of 4 M acetic acid. Precipitation was done with Methanol: chloroform: water (4:1:3) in chilled condition. Then pellet was subjected to trypsin digestion and samples were prepared by reduction of proteins followed by alkylation with iodoacetamide and digestion into peptides, which were purified by means of Zip tip C18 chromatography (Millipore; Billerica, MA). 
Digestion: Protein digestion were done in AmBic at 370C is used for protein digestion for 18Hr with 600rpm. Digested protein samples were aspirated several times in equilibrated Zip-tip C18 Resin spin columns (Millipore; Billerica, MA), resin bound peptides were separated by washing thrice with 0.1% TFA and eluted twice with 50 % CAN. Finally peptides were eluted in 100% ACN and samples were concentrated using Eppendorf speed vac (Model 5301). Samples were reconstituted in 3% ACN and 0.1% Formic acid (1µg / µl) by continuous vortexing and finally injected in to LC MS column.
Separation: LC/MS of protein samples were done using Triple-TOF 5600 (AB Sciex; Concord, Canada) mass spectrometry coupled with Micro LC 200 (Eksigent; Dublin, CA) in high-sensitivity mode. Peptides were injected into a Eskigent C18- RP HPLC column (100 × 0.3 mm, 3 µm, 120Å) and then separated using a 90 min gradient of 3 % to 35 % mobile phase (Mobile phase A: 100 % water with 0.1 % (v/v) formic acid, Mobile Phase B: 100 % acetonitrile with 0.1 % (v/v) formic acid) at a flow rate of 8 µL/min.
Acquisition: Data is acquired on Micro LC 200 coupled to a Triple TOF 5600 MS (AB SCIEX) by SWATH in triplicate for both control and test sample. 
Informatics: Acquired data was analyzed with Marker View version 1.2.1 software after checking SWATH files for overlapping peaks with peak view version 2 software. 
Instruments: AB SCIEX Triple TOF 5600.
DOI: 10.17632/6v7pghpw34
title: Fallout radionuclides in cryoconite and proglacial sediments

description: These data describe fallout radionuclide (FRN) activity concentrations for glacial sites around the global cryosphere, including 137Cs, 241Am, and excess 210Pb. Mean, maximum, and minimum FRN activity concentrations are provided for cryoconite at each glacier site, and minimum and maximum FRN activity concentrations are provided for proglacial sediment samples at sites where this data is available. Loss-on-ignition and FRN data are also provided for a selection of individual cryoconite samples. FRN activity concentrations (all in Bq kg-1) are based on gamma and alpha spectrometry, and the methodological approach is described in detail in Clason et al. (2023, Science of the Total Environment) in addition to original data sources where applicable.
DOI: 10.17632/7pgkgd6bz5
title: Delgado et al. 2023 Microscopy Images Fig 1

description: [Folder] Figure 1D: Representative images from Delgado et al. 2023 Fig 1F. MDA-MB-231 tf-BNIP3 cells transduced with mito-BFP and treated with Baf-A1 or untreated. ------ [Folder] Figure 1F: Representative images from Delgado et al. 2023 Fig 1F. MDA-MB-231 tf-BNIP3 cells transduced with sgRNA targeting ATG9A with LAMP1 immunostaining. Annotations mJD66 - the MDA-MB-231 tf-BNIP3 cell line 136: sgRNA non-targeting control 99: sgRNA targeting ATG9A -----
DOI: 10.17632/fbgvfp9mnj
title: Theoretical study of submerged artificial manmade infrastructures. 

description: Submerged artificial infrastructures in Mediterranean coastal ecosystems.
DOI: 10.17632/kry5pdc7sp
title: LINF_360054400

description: 60S ribosomal protein L18; Leishmania infantum
DOI: 10.17632/n9btgjxyjg
title: Caledonian tick vaccine Antibody titers

description: These data present immune response of animals vaccinated with a Bm86 vaccine. Animals were in 9 farms (number 1- to 9- in the first column). Blood samples were collected on 25 cows the date of the first vaccination (d+0) and at each booster (d+30 ; 180 ; 360 ; 545). Samples were analysed with ELISA method and results are in %S/P = (100*(OD Sera/OD Positive control)), where OD is Optical Density.
DOI: 10.17632/rpm3hhm3r2
title: Data for: Half-Length and the FACT Framework: Distance-Decay and Citizen Opposition to Energy Facilities

description: Replication data for Half-Length and the FACT Framework: Distance-Decay and Citizen Opposition to Energy Facilities
DOI: 10.17632/xt3vgr89n9
title: Association between Inflammatory Bowel Disease and Henoch-Schönlein purpura: A Bidirectional Two-Sample Mendelian Randomization Study

description: We applied a bidirectional 2-sample Mendelian randomization (MR) analysis to explore the relationships between inflammatory bowel disease (IBD), Crohn’s disease (CD), ulcerative colitis (UC), and Henoch-Schönlein purpura (HSP). As a result, CD had a suggestive increased risk for HSP (OR: 1.12, 95% CI: 1.00 to 1. 25, P < 0.05). We did not find a significant causal relationship between IBD(OR: 1.10, 95% CI: 0.989 to 1.23, P > 0.05), UC(OR: 1.04, 95% CI: 0. 909 to 1.19, P > 0.05) and HSP.In this database, we show all detailed information about the genetic variables.
DOI: 10.17632/m58xk3dmgs
title: Infection leaves a genetic and functional mark on the gut population of a commensal bacterium 

description: Gastrointestinal infection changes microbiome composition and gene expression. In this study, we demonstrate that enteric infection also promotes rapid genetic adaptation in a gut commensal. Measurements of Bacteroides thetaiotaomicron population dynamics within gnotobiotic mice reveal that these populations are relatively stable in the absence of infection; introduction of the enteropathogen Citrobacter rodentium reproducibly promotes rapid selection for a single-nucleotide variant with increased fitness. This mutation promotes resistance to oxidative stress by altering the sequence of a protein, IctA, that is essential for fitness during infection. We identified commensals from multiple phyla that attenuate the selection of this variant during infection. These species increase the levels of vitamin B6 in the gut lumen; direct administration of this vitamin is sufficient to significantly reduce variant expansion in infected mice. Our work demonstrates that a self-limited enteric infection can leave a stable mark on resident commensal populations that increases fitness during infection. 
The deposited data consists of whole genome sequencing data of barcoded Bacteroides thetaiotaomicron strains isolated from mouse gut with or without Citrobacter rodentium infection and ancestral naive strains that have not been in mice.
DOI: 10.17632/sr4w8537t8
title: The levels and related factors of kinesiophobia among heart disease patients: a systematic review and meta-analysis

description: Supplementary material for the systematic review and meta-analysis "The levels and related factors of kinesiophobia among heart disease patients: a systematic review and meta-analysis"
DOI: 10.17632/xpbxbzy4th
title: EWS/FLI mediated reprogramming of 3D chromatin promotes an altered transcriptional state in Ewing sarcoma

description: Codes used to analyze NGS data used in the manuscript titled.
DOI: 10.17632/z5t5pf45bw
title: Program Evaluation Reflections

description: Data collected as part of normal classroom practices; later de-identified and prepped for analysis under Lamar University IRB approval. This data includes 452 qualitative reflections to weekly learning activities.  Data were collected over a period of five months from doctoral students in an EdD program who were registered for a "program evaluation in education" course. Data include columns for easy importing into MAXQDA. Data were collected through Kirkpatrick's (1994) level two evaluations embedded into an online learning management system.
DOI: 10.17632/zcv6fbzx6m
title: Panel data of offline sales and air pollution

description: The dataset contains daily offline sales data for facemasks (as a major protective measure against air pollution), throat drops (as a major curative measure for sore throats) and regular candy at local convenience chain stores located in seven cities of China (Urumqi, Xian, Changsha, Fuzhou, Linfen, Zhongshan, and Hengshui). It also contains daily PM2.5 levels from monitoring sites in the seven cities. We also collect product’s daily average price, meteorological factors such astemperature (℃), humidity (%rh), and wind speed (m/s) and weekend variable.
DOI: 10.17632/22jv8j5rx5
title: Data CDI Thesis Effie Leijten - Towards Holistic Science

description: This dataset contains the interview transcripts and coding of the CDI Thesis of Effie Leijten
DOI: 10.17632/54p8vnw2g8
title: Using a substitute species to inform translocation of an endangered territorial mammal.

description: We used a surrogate subspecies, Tamiasciurus fremonti fremonti to test different translocation techniques to inform on potential management actions with regards to the endangered Mt. Graham red squirrel (Tamiasciurus fremonti grahamensis). Individuals of both subspecies defend year-round territories in similar mixed conifer forests at elevations between 2650 - 2750 m, where they store cones to survive over winter. We fitted VHF radio collars to 54 animals, and we monitored their survival and movements until individuals settled on a new territory. We considered the effect of season, translocation technique (soft or hard release), and body mass on survival, distance moved after release, and time to settlement of translocated animals.
DOI: 10.17632/66tg6gjk94
title: Diagnostic accuracy of dermoscopy for onychomycosis: a systematic review and meta-analysis

description: Supplementary data
DOI: 10.17632/6k6ng65623
title: Generation of host-directed and virus-specific antivirals using targeted protein degradation promoted by small molecules and viral RNA mimics

description: Targeted protein degradation (TPD), as exemplified by proteolysis-targeting chimera (PROTAC) is an emerging drug discovery platform. PROTAC molecules, which typically contain a target protein ligand linked to an E3 ligase ligand, recruit a target protein to the E3 ligase to induce its ubiquitination and degradation. Here, we applied PROTAC approaches to develop broad-spectrum antivirals targeting key host factors for many viruses and virus-specific antivirals targeting unique viral proteins.
DOI: 10.17632/6kd6gb9td7
title: Depositional history of the subaqueous delta off the southeastern coast of Korea during the postglacial period

description: These datasets include original data of paper entitle "Depositional history of the subaqueous delta off the southeastern coast of Korea during the postglacial period".

Datasets consist of the following items:
Table 1 - Result data of grain size analysis and water content measurement for core sediments
Table 2 - Result data of GRA density measurement for core sediments
Figure 1 - Sparker(upper) and Chirp(lower) image related to profile of "Figure 3a" within paper
Figure 2 - Sparker(upper) and Chirp(lower) image related to profile of "Figure 3b" within paper
Figure 3 - Sparker image related to profile of "Figure 3c" within paper
Figure 4 - Sparker(upper) and Chirp(lower) image related to profile of "Figure 4" within paper
DOI: 10.17632/7r8sf2xmb9
title: The Effects of Currency Devaluation on Ethiopia’s Major Export Commodities: In Case of Coffee and Khat

description: this data is used in the research entitled "The Effects of Currency Devaluation on Ethiopia’s Major Export Commodities: In Case of Coffee and Khat: Evidence from Vector Error Correction Model and Johansen Co-Integration Test", so that any interested body can access and verify
DOI: 10.17632/hhncshpt33
title: RNA Seq of Spirodela, Pistia and Arabidopsis root versus shoot

description: RNASeq data for Ware et al., 2022
DOI: 10.17632/jsp4pphmxm
title: Raw data for establishing a mathematical model of atherosclerosis staging based on lipidomics

description: This data is the test results of serum lipid metabolites in ApoE-/- mice and C57BL/6 mice fed with normal diet at different ages (4W, 8W, 12W, 16W, 20W, 24W, 28W, 32W). 4WC57 represents the 4-week-old The peak area of C57BL/6mice lipid metabolites, 4WAP represents the peak area of lipid metabolites in 4-week-old ApoE-/- mice, with 10 replicates in each group, and other sample names are analogous. After pre-processing the raw mass spectrometric data by removing the background noise, peak extraction, deconvolution, peak alignment, alignment, merging, and noise removal after peak merging, gap filling, data export using the data mining software MZmine 2.10, we identified 732 lipid components. Area represents the peak area. The NAME line represents the name of the lipid metabolite. QC samples are quality control samples that are mixed with several samples as a constant standard, and 2 QCs are taken every 20 samples.
DOI: 10.17632/k2db92p4x9
title: LINF_260022100

description: sphingolipid delta 4 desaturase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/krgsm6h24w
title: LINF_330006400

description: trans-splicing factor
Leishmania infantum (strain JPCM5)
DOI: 10.17632/ryr3rfbcps
title: Data for: Childhood environmental unpredictability and experimentally primed uncertainty in relation to intuitive versus deliberate visual search as a cognitive life history 

description: The two datasets are for the paper entitled Childhood environmental unpredictability and experimentally primed uncertainty in relation to intuitive versus deliberate visual search as a cognitive life history.
The authors investigated the interaction between childhood unpredictability and the experimentally manipulated state of uncertainty on intuitive versus deliberate visual search strategies by conducting a simple visual search (Study 1) and a complex information search (Study 2). The eye-movements of the participants were used as indicators of intuitive strategies versus deliberate strategies during visual search tasks.
DOI: 10.17632/swt2pjbxt7
title: A low-cost, portable, open source, 3D-printed centrifuge that can be used for purification of saliva samples to detect SARS-CoV2

description: CAD files and video description of Mobilefuge
DOI: 10.17632/v7kdvzcrns
title: Data for: Childhood unpredictability, life history, and intuitive versus deliberate cognitive styles

description: The two datasets are for the paper entitled Childhood unpredictability, life history, and intuition versus deliberation cognitive styles. The authors investigated the relationships among childhood unpredictability, slow life history strategies, and self-report preference for deliberation (Study 1); and the interaction between childhood unpredictability and experimental conditions (mortality cues priming vs. control) on participants' performance on the Cognitive Reflection Test that was a behavioral indicator of intuitive vs. deliberate cognitive styles (Study 2).
DOI: 10.17632/xgr83xy8pm
title: Proteomics and RNA-seq of RIBOTAC treatment in MDA-MB-231 cells

description: C1-RIBOTAC is a small molecule RNA degrader developed in our lab that selectively binds to human pre-miR-155 in cells and recruits RnaseL to degrade the transcript. Some RNA-binding compounds were expected to elicit a biological response as they bind functional sites, but most binders would not be expected to affect biological function.  In these latter cases, an alternative way to modulate RNA biology is by cleaving the target via a ribonuclease targeting chimera, where an RNA-binding molecule is appended to a heterocycle that binds and locally activates RNase L.  Overlay of the substrate specificity for RNase L with the binding landscape of small molecules in this study revealed many favorable candidate binders that are inactive but could be potently bioactive when converted into a degrader.  We provide proof-of-concept by design of a degrader of the precursor to disease-associated microRNA-155 (pre-miR-155) in multiple cell lines and disease settings.  These studies illustrate that small molecule RNA-targeted degradation can be leveraged to convert avid, yet inactive, binding interactions into potent and specific modulators of RNA function. The uploaded datasets include global proteomics and total RNA-seq studies to evaluate the effect on C1-RIBOTAC on the proteome and transcriptome of MDA-MB-231 cells.
DOI: 10.17632/xs5j3ybd5w
title: Learning Attitudes of Junior High School Students Toward Home-Based Education

description: The data set assessing the learning attitudes of junior high school (JHS) students toward Home-Based Learning and the learning attitudes measured across gender, grade level, age, and socio-economic status. Students’ Learning Attitudes which are attributed to students’ feelings and behaviors in learning during Home-Based Education (HBE) is an important factor in students’ goal setting, beliefs toward learning, school adjustment, academic self-efficacy, intrinsic valuation of schoolwork, problem-solving skills, and motivations. The data collected examined the Students’ Learning Attitudes towards Home-Based Education. Data collection employed a descriptive - survey approach to determine the level of Students’ Learning Attitudes towards Home-Based Education measured in terms of Nature, Anxiety, Expectations, & Openness to Learning; and to assess Students’ Learning Attitudes measured in the four dimensions across gender, grade level, age, and socio-economic status.
DOI: 10.17632/4ymgt8tcpx
title: Natural frequency effect on the path of an elastically supported circular cylinder

description: Flow around a freely vibrating circular cylinder in two-degrees-of-freedom is investigated at low Reynolds numbers using two-dimensional numerical simulation. Systematic computations are carried out to investigate the effect of cylinder’s natural frequency fN on the oscillation amplitudes and aerodynamic force coefficients. The mass ratio and the structural damping coefficient values are fixed at m*=10 and ζ=0, respectively.
In addition to the typical distorted figure-eight motion, a raindrop-shaped path is also found whose range widens with increasing fN. Within this range the streamwise cylinder oscillation amplitude reaches higher values compared to figure-eight motions and the curves shift upwards with increasing fN. Sudden switches in the vortex structure occur near the upper boundaries separating the raindrop-shaped and distorted figure-eight motion domains. The root-mean-square (rms) values of lift plotted against U*St0 shift upwards in the raindrop-shaped motion range and downwards in the figure-eight motion range, while the rms of drag shifts to higher values in both regimes with increasing fN. The time-mean of lift coefficient jumps abruptly between two solutions. Using pre- and post-jump analysis it is shown that these solutions are mirror images of each other. Chaotic cylinder paths are observed when increasing the natural frequency over a critical value.
DOI: 10.17632/86g3w9vhbn
title: Detoxification of aflatoxin B1 by essential oils of medicinal herbs

description: The essential oils (EO) extracted from the medicinal plants viz., Heliotropium bacciferum, Ocimum dhofarense and Zataria multiflora were diluted with methanol (1:10, v/v) and 250 μl of EO was mixed with AFB1 (50 μg/l) in a microcentrifuge. Following a 24-h incubation at 25°C, AFB1 in the mixture was extracted with 250 μl of chloroform. The chloroform fraction was evaporated at 60°C using a water bath and the residue was quantified by enzyme-linked immunosorbent assay using a commercial kit (RIDASCREEN Aflatoxin B1; R-Biopharm AG, Darmstadt, Germany).
DOI: 10.17632/kvp9p9z2jp
title: Comparison of Lakes with Hypersaline, Heliothermic, sub-surface Oxygen Maxima

description: The data set is a comparison of Meromictic Lakes which exhibit at least few characteristics among hyper-salinity, sub-surface temperature maxima (heliothermic) ,sub-surface oxygen maxima(metalimnitic) and oxygen supersaturation. Very few such lakes are reported so far with about thirty (30) lakes world wide which are meromictic and heliothermic. . Meromictic lakes are highly stratified which exhibit meromixis, a condition in which a lake does not mix completely. Nine such lakes are reported in Asia and this data reports first time from India, Pulicat lake which has all these characteristics. Interestingly, the embedded meromixis still sustains some species withstanding the large ranges of temperature and salinity in this region of Pulicat. the Pulicat Lake in southern India that attracts various aquatic, migratory birds like Greater & Lesser Flamingoes, Pelicans, Terns, Teals, Grey heron, Open Bill Stork, Black-Headed Ibis, spot-Billed ducks, painted stork and little Egret. The lake is a habitat 88 species of birds which include more than 5 endangered and threatened species. The salinity of the lagoon is extremely fluctuating, shifting regimes from fresh to hypersaline on seasonal scales. recording a maximum of 191 ppt. Such high salinity in the Pulicat have so far not been reported.
DOI: 10.17632/tp6v9xn84n
title: LINF_240024500

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/278g5nk5v7
title: Encuesta TD-Workshop 4.

description: El actual dataset, soporta los archivos de la encuesta realizada a la organización energética seleccionada, se compone de un archivo pdf, que consolida los resultados a través de graficos. Un archivo en formato Excel, el cual aloja las respuestas obtenidas por los colaboradores en una tabla. Finalmente el documentos de análisis en pdf.
DOI: 10.17632/4mhtbpsmd8
title: Spinors on CP2 ⊗S2 example and counter-example

description: We argue that the Cartesian product CP2 ⊗ S2 is a six dimensional CalabiYau
Manifold with the Euler characteristic six that corresponds to three families of fermions.
It is a counter-example of a single generation of fermion one gets by putting a spinc
structure on CP2, by including a gauge field of SU(2) that is isomorphic to S2.
DOI: 10.17632/c58ngv5mm7
title: Germinal center responses to SARS-CoV-2 mRNA vaccines in healthy and immunocompromised individuals. Lederer et al.

description: Supplementary Table 4. Cell populations from FNA and PBMC samples, related to Figures 1-5 and S1-6.
Data are displayed as a percentage of lymphocytes.
DOI: 10.17632/cn4h5ydx6h
title: Women passengers' opinion on transportation scenarios, challenges, ride hailing services and taxis in Nepal

description: The dataset includes survey data and interview data from the study area, Kathmandu, Nepal. The survey data is collected through a close ended questionnaire using 5-point Likert scale. The sample group contained students, working women, elderly women and homemakers. Both online forms and paper forms were used to collect the data. Interview data was collected from practitioners and academicians in transportation, travel and hospitality and food delivery business. Transcripts were generated for recordings. 4 interviews were conducted in English and 2 interviews conducted in a mix of English and Nepalese language was translated to English. The contents were categorised into themes.