cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/y9rf4nj7rd
title: Three-dimensional loading vehicle routing problem with split pickups and time windows (3L-SPVRP-TW): instances and results

description: This folder provides instances for a three-dimensional loading vehicle routing problem with split pickups and time windows (3L-SPVRP-TW) as well as results obtained with a three-phase heuristic.

The 240 instances are built on the benchmark from Krebs et al. (2021) adding real features extracted from our survey among Belgian service providers. To have more information about the instances, please refer to the README file included in the "PracticalInstances" folder.

The folder "ResultsInstancesKrebs" contains the solutions provided by the three-phase heuristic on the instances from Krebs et al. (2021), while the folder "ResultsPracticalInstances" contains the solutions provided by the three-phase heuristic on the 240 practical instances presented hereabove.
In both folder, each solution starts with the name of the instance.
In "ResultsInstancesKrebs", we give the repetition identification (15 runs per instance, called “Rep”), and the constraint set as referenced by Krebs in her Github. In "ResultsPracticalInstances”, we write the information about the number of customer’s shifts (2 or 4), the constraints considered (split or not, reachability or sequential loading), the EPs’ selection criterion (TDLF or DBLF) and the speed during the peak and off-peak hours. 
In both files, we then provide the number of used vehicles in the solution, the total cost (penalty + travel distance), the computation time (in ms) as well as the number of iterations in the GVNS. Next, each route is described with the sequence of customers and the arrival and departure times associated to each of them. Finally, the loading pattern in the vehicle is given (customer id, box type, Boolean stating if the box is rotated, the location of the front left bottom, the characteristics of the box, namely the length, width, height and mass).

The file “SummaryResultsPracticalInstances.csv” contains the total travel distance, the number of vehicles in the solution and the computational time (in seconds) for the 240 practical instances.


Krebs C, Ehmke JF, (2021). Axle Weights in combined Vehicle Routing and Container Loading Problems. EURO Journal on Transportation and Logistics, Volume 10, ISSN 2192-4376, DOI: 10.1016/j.ejtl.2021.100043, URL https://www.sciencedirect.com/science/article/pii/S2192437621000157
DOI: 10.17632/zsv3bgp7t4
title: Facial Recognition Dataset FULL (part 4 of 4)

description: Includes face images of 11 subjects with 3 sets of images: one of the subject with no occlusion, one of them wearing a hat, and one of them wearing glasses. Each set consists of 5 subject positions (subject's two profile positions, one central position, and two positions angled between the profile and central positions), with 7 lighting angles for each position (completing a 180 degree arc around the subject), and 5 light settings for each angle (warm, cold, low, medium, and bright). Images are 5184 pixels tall by 3456 pixels wide and are saved in .JPG format.
DOI: 10.6084/m9.figshare.11384241.v3
title: DepMap 19Q4 Public

description: This dataset contains the results of Avana library CRISPR-Cas9 genome-scale knockout (prefixed with Achilles) as well as mutation, copy number and gene expression data (prefixed with CCLE) for cancer cell lines as part of the Broad Institute’s Cancer Dependency Map project. We have repackaged our fileset to include all quarterly-updating datasets produced by DepMap.<br>The Avana CRISPR-Cas9 genome-scale knockout data has expanded to include 689 cell lines, the RNAseq data includes 1249 cell lines, and the copy number data includes 1682 cell lines. Please see the README files for details regarding data processing pipeline procedures updates.<br>As our screening efforts continue, we will be releasing additional cancer dependency data on a quarterly basis for unrestricted use. For the latest datasets available, further analyses, and to subscribe to our mailing list visit https://depmap.org.<br>Descriptions of the experimental methods and the CERES algorithm are published in http://dx.doi.org/10.1038/ng.3984. Some cell lines were process using copy number data based on the Sanger Institute whole exome sequencing data (COSMIC: http://cancer.sanger.ac.uk.cell_lines, EGA accession number: EGAD00001001039) reprocessed using CCLE pipelines. A detailed description of the pipelines and tool versions for CCLE expression can be found here: https://github.com/broadinstitute/gtex-pipeline/blob/v9/TOPMed_RNAseq_pipeline.md.<br>## V2 ChangesCCLE_fusions.csv and CCLE_fusions_unfiltered.csv were swapped in v1, they are correct now.<br>## V3 ChangesUACC62_SKIN_CJ1_RESISTANT has been removed from Public 19Q4 Achilles files due to an issue with fingerprinting. Values for this cell line have been NAed in the following files: Achilles_gene_effect.csv, Achilles_gene_effect_unscaled.csv, Achilles_gene_dependency.csv, Achilles_logfold_change.csv, Achilles_raw_readcounts.csv.<br>
DOI: 10.6084/m9.figshare.17040458.v1
title: Supplementary Material for: The Prognostic Importance of Serum Sodium for Mortality among Critically Ill Patients Requiring Continuous Renal Replacement Therapy

description: <b><i>Background:</i></b> Serum sodium derangement is common in critically ill patients requiring continuous renal replacement therapy (CRRT). We aimed to assess the association between serum sodium before and during CRRT with mortality. <b><i>Methods:</i></b> This is a historical cohort study of 1,520 critically ill patients receiving CRRT from December 2006 through November 2015 in a tertiary hospital in the United States. Using logistic regression analysis, we used serum sodium before CRRT, mean serum sodium, and serum sodium changes during CRRT to predict 90-day mortality after CRRT initiation. <b><i>Results:</i></b> Compared with the normal serum sodium levels, the odds ratio (OR) of 90-day mortality in patients with serum sodium before CRRT of 143–147 and ≥148 mmol/L were 1.45 (95% CI 1.03–2.05) and 2.24 (95% CI 1.33–3.87), respectively. There was no significant increase in 90-day mortality in serum sodium of ≤137 mmol/L. During CRRT, the mean serum sodium levels of ≤137 (OR 1.41; 95% CI 1.01–1.98) and ≥143 mmol/L (OR 1.52; 95% CI 1.14–2.03) were associated with higher 90-day mortality. The greater serum sodium changes during CRRT were associated with higher 90-mortality (OR 1.35; 95% CI 1.21–1.51 per 5-mmol/L increase). <b><i>Conclusion:</i></b> Before CRRT initiation, hypernatremia and during CRRT, hypo- and hypernatremia were associated with increased mortality.
DOI: 10.17632/8r24222wcc
title: Comprehensive Smartphone Image Dataset for Fish Species Identification in Bangladesh's Freshwater Ecosystems

description: This dataset comprises high-resolution smartphone images capturing various fish species commonly found in Bangladesh. The images were collected from local fish markets and labeled according to species. The dataset includes 20 folders representing different fish species, containing individual images. No preprocessing or normalization was applied to the images. There are a total of 50,000 images in the dataset (26,950 raw data and 23,050 augmented).

The Fish Species Identification dataset (6.67 GB) is packaged within the compressed zip file 'Fish Data.zip,' providing a structured framework for researchers to access and utilize the dataset efficiently. Upon extraction, researchers will find a main folder titled 'Fish Data', denoting the processed images. Inside this directory, 20 individual subfolders are meticulously organized, each corresponding to a distinct fish species prevalent in Bangladesh. This hierarchical organization facilitates easy navigation and retrieval of data, ensuring seamless integration into research endeavors focused on fish species recognition and conservation efforts.

The dataset is organized into 20 categories, each corresponding to a different fish species. Below is the list of fish species, along with the number of images available for each:

Aair (Long Whiskers Catfish) - 1804 Raw Images + 696 Augmented
Boal (Wallago) - 1651 Raw Images + 849 Augmented
Chapila (Indian River Shad) - 428 Raw Images + 2072 Augmented
DeshiPuti (Local Puti) - 412 Raw Images + 2088 Augmented
Foli (Spotted Snakehead) - 562 Raw Images + 1938 Augmented
Ilish (Hilsa) - 1031 Raw Images + 1469 Augmented
KalBaush (Orangefin Labeo) - 917 Raw Images + 1583 Augmented
Katla (Catla) - 1765 Raw Images + 735 Augmented
Koi (Climbing Perch) - 842 Raw Images + 1658 Augmented
Magur (Walking Catfish) - 574 Raw Images + 1926 Augmented
Mrigel (Mrigal) - 1808 Raw Images + 692 Augmented
Pabda (Pabdah Catfish) - 1764 Raw Images + 736 Augmented
Pangas (Pangas Catfish) - 934 Raw Images + 1566 Augmented
Puti (Puti) - 1560 Raw Images + 940 Augmented
Rui (Rohu) - 2500 Raw Images + 0 Augmented
Shol (Snakehead Murrel) - 1424 Raw Images + 1076 Augmented
Taki (Spotted Snakehead) - 2223 Raw Images + 277 Augmented
Tarabaim (Striped Snakehead) - 1262 Raw Images + 1238 Augmented
Telapiya (Tilapia) - 2058 Raw Images + 442 Augmented
Tengra (Tengra Catfish) - 1431 Raw Images + 1069 Augmented
DOI: 10.6084/m9.figshare.13194554.v1
title: Data and code for “A 23 m.y. record of low atmospheric CO2” comment

description: Data and R code for a Geology Forum comment on Cui et al., 2020, A 23 m.y. record of low atmospheric CO2: Geology, v. 48, no. 9, p. 888-892. The R code covers the re-analyses presented in the comment, as well as the code to reproduce the figures. The included data are from Lomax et al., 2019 GCA, which are used as an independent validation dataset.
DOI: 10.6084/m9.figshare.28469264.v5
title: Electrochemical measurement of E. coli

description: Data set belonging to:Decoding In-Cell Respiratory Enzyme Dynamics by Label-Free <i>In-situ</i> ElectrochemistryComplete List of Authors:Yoshihide Tokunou, Tomohiko Yamazaki , Takashi Fujikawa , Akihiro Okamoto<br><br>This folder contains the original data used for the Figure 6, Figure S15 and Figure S16.<br>
DOI: 10.6084/m9.figshare.7845167.v1
title: The global-scale distributions of soil protists and their contributions to belowground systems.

description: Associated files for analyses
DOI: 10.17632/f7rs6bzkbc
title: The Synthetic Fake Facial Emotion Recognition (FFER) dataset

description: The Synthetic Fake Facial Emotion Recognition (FFER) dataset created by Stable Diffusion model. The dataset includes 7 emotion categories: angry, disgust, fear, happy, sad, surprise, and neutral, each with over 3000 synthetic facial images with 64x64 pixels.
DOI: 10.17632/jbzsz92v23
title: p300 Is an Obligate Integrator of Combinatorial Transcription Factor Inputs. Ferrie et. al.

description: This dataset contains representative movies from the Fluorescence Recovery After Photobleaching (FRAP) and Single Molecule Tracking (SMT) experiments along with the unaltered Western Blot images and ChIP-seq data from Ferrie, J. J., Karr, J. P., Graham, T. G. W., Dailey, G. M., Zhang, G., Tjian, R., and Darzacq, X. "p300 is an Obligate Integrator of Combinatorial Transcription Factor Inputs."
DOI: 10.6084/m9.figshare.156862.v2
title: Number of animal species described each year

description: Data and graph of number of animal species described each year based on data from Taxatoy and Index of Organism Names (ION)
DOI: 10.17632/99vbcgnn5w
title: Data for: Discussion on Au transportation mechanism in melt-magma-fluid in porphyry Cu deposit – a case study from Jinchang porphyry Au (Cu) deposit, Heilongjiang province, China

description: This data includes the major and trace element compositions of siegenite and native gold from Jinchang porphyry Au(Cu) deposit, China.
DOI: 10.17632/gwyp5rv43h
title: An image dataset for classifying leather based on leather pattern

description: This dataset comprises 1436 images of cow and goat leather, highlighting the diverse patterns and textures found in different stages of leather processing. The collection is categorized into wet blue, cow crust, cow crust (opposite side),cow crust(rejected), cow finished leather, cow finished (opposite side), cow finished (rejected quality) and goat finished leather.
DOI: 10.17632/mkbbwtztzy
title: Operation Data from the UW Natural Circulation FLiBe Flow Loop

description: Operating measurements from three multi-week test campaigns of the natural circulation FLiBe loop. This system is investigating thermal hydraulic behavior of the molten salt BeF_2 -LiF (33 - 67 mol %). The system behaves in a stable fashion, but shows unusual local transients, such as flow break-down in the riser and thermal jumps at the cooler exit. Heat transfer shows promising trends that FLiBe will behave as a normal heat transfer fluid, as long as salt purity can be maintained. The most recent test shows heat transfer degradation that is likely a result of oxides and impurities. The data archive contains as-built dimensions, Matlab analysis codes, and the raw data files.
DOI: 10.17632/tcs9wmdht7
title: Postmortem investigation of Onnagawa shale by X-ray computed tomography

description: These data were collected by deforming a sample in a high-pressure gas rig and performing a post mortem analysis in a commercially available X-ray CT scanner. An overview of the data is provided in the README.dox file.
DOI: 10.6084/m9.figshare.24558607.v2
title: Annotation information and source data

description: The genome annotation file and source data for the chromosome-level assembly of <i>Chrysosplenium </i><i>sinicum.</i>The dataset includes the whole genome annotation information (Csi_v1.gff3), cds sequence (Csi_v1_cds.fasta), protein sequence (Csi_v1_peps.fasta), repeat sequence (Csi_repeat_element.gff3), mitochondria genome sequence and genome annotation (Mitochondrial_genome.zip), source data for Fig. 4a (Number of repetitive elements of photosynthesis genes.xlsx), Fig. 4b (Number of repetitive elements near gene.txt), Fig. 4d (Chloroplast and mitochondrial DNA distribution.xlsx), Fig. 4e (Blast between nuclear genes with chloroplast gene.blast), Fig. 7b (Annotation enrichment of alternatively spliced genes.xlsx).
DOI: 10.6084/m9.figshare.28978574.v1
title: A Critical Analysis of Reincarnation from an Islamic Perspective: A Comparative Study with Other Religions

description: This article critically examines the concept of reincarnation from an Islamic theological perspective, refuting its validity through Quranic verses, Islamic scholarship, and philosophical reasoning. It highlights the incompatibility of reincarnation with Islamic doctrines of the afterlife, divine justice, and the soul’s singular journey. The study includes a comparative analysis with other religions, notably Hinduism and Buddhism, where reincarnation is a core belief, and Judaism and Christianity, which generally reject it. By exploring theological, philosophical, and psychological dimensions, the article elucidates differences and similarities across these faiths. It also critiques the spiritual appeal of reincarnation and its implications from an Islamic viewpoint. This work contributes to interreligious dialogue and offers a comprehensive Islamic critique of reincarnation for scholars and students of comparative religion.<br>Authored by Khashayar Sharifinia for the Islamic Thought 1 course at Azad University, Nowshahr Branch, this article was registered on Figshare to ensure intellectual property protection.
DOI: 10.17632/2gmd83f6wd
title: Technology Position of Manufacturing in Global Value Chains

description: The dataset provides measurements of the reliance on imported intermediate goods and the technological position of manufacturing within global value chains.
DOI: 10.17632/36x37gvx7z
title: Dataset of EFFECTIVENESS OF MINDFULNESS-BASED COGNITIVE THERAPY FOR CANCER (MBCT-Ca) TO REDUCE SYMPTOMS OF ANXIETY, DEPRESSION AND IMPROVE QUALITY OF LIFE of CERVICAL CANCER PATIENTS

description: The .pdf file comprises the data sheets and questionnaires utilised in the research. This dataset comprises personal identity and demographic forms, disease diagnosis forms, current treatment information, the HADS (Hospital Anxiety and Depression Scale) questionnaire, and the EORTC QLQ C30 (European Organisation for Research and Treatment of Cancer Quality of Life Questionnaire C-30) questionnaire.
DOI: 10.17632/4shm59rkzj
title: Performance evaluation and shape optimization of a novel vertical axis autorotation current turbine

description: Experimental and numerical simulation data in the paper “Performance evaluation and shape optimization of a novel vertical axis autorotation current turbine”
DOI: 10.17632/97fvwbwwbh
title: Biodiversity in residential gardens

description: Dataset that corresponds to the Biodiversity in residential gardens: a review of the evidence base paper.
DOI: 10.17632/z42c97sw4c
title: Experiments dataset for "Barchan dunes on bidispersed granular beds"

description: This dataset contains information from experiments about the paper "Barchan dunes on bidispersed granular beds". The files contain information about Matlab scripts for extracting images from the .MOV files, and then to process those images to obtain dunes' information such as centroid of the dunes, detection and tracking the particles. Also, we present some videos from the experiments which are related to the results shown in the article.
DOI: 10.6084/m9.figshare.27241386.v1
title: NAACL'2025 Artifact

description: Large Language Models (LLMs) have shown impressive capabilities in generating code, yet they often produce hallucinations—unfounded or incorrect outputs—that compromise the functionality of the generated code. This study investigates the application of local uncertainty quantification methods to detect hallucinations at the line level in code generated by LLMs. We focus on evaluating these methods in the context of two prominent code generation tasks, HumanEval and MBPP. We experiment with both open-source and black-box models. For each model, we generate code, calculate line-level uncertainty scores using various uncertainty quantification methods, and assess the correlation of these scores with the presence of hallucinations as identified by test case failures. Our empirical results are evaluated using metrics such as AUROC and AUPR to determine the effectiveness of these methods in detecting hallucinations, providing insights into their reliability and practical utility in enhancing the accuracy of code generation by LLMs.
DOI: 10.6084/m9.figshare.27901884.v1
title: <b>饮食管理根据肠道微生物群和代谢物改善多囊卵巢合并肥胖</b>

description: 背景多囊卵巢综合征 （PCOS） 是常见的代谢性疾病。患有 PCOS 的女性经常超重或肥胖。本研究旨在基于肠道菌群探讨生酮饮食在肥胖多囊卵巢综合征 （PCOS） 中的机制。<br>方法为了诱导肥胖的 PCOS，C57BL/6 小鼠皮下注射含有 10 mg 二氢睾酮 （DHT）剂。进行 90% 脂肪和 10% 蛋白质的生酮饮食 3 周。收集新鲜粪便样本进行 16S rRNA。使用 LC-MS 使用血样进行代谢组学分析。使用假不育小鼠验证生酮饮食在 PCOS 合并肥胖中的作用。<br>结果与对照组小鼠相比，接受 DHT 刺激的小鼠体重和睾酮增加，促卵泡激素减少，卵巢组织发生严重变化。生酮饮食显著抑制小鼠的肥胖和 PCOS 样症状。DHT 和/或生酮饮食显着改变了肠道微生物群的组成。α。在β多样性方面，各群体之间存在巨大的距离。<i>中支原体</i>、 <i>埃格菌 、</i> <i>肠 隐</i> 和 <i>贝里氏菌</i> 是 PCOS 和肥胖小鼠的生物标志物。<i>粪杆菌属 （Faecalibaculum</i> 和<i>双歧杆菌属 （Bifidobacterium</i>） 是 DHT+饮食组中的显著属。代谢物群落也显示出巨大的变化。特征代谢物在精氨酸和脯氨酸代谢途径以及赖氨酸降解途径中高度富集。假不育小鼠验证了生酮饮食在 PCOS 合并肥胖中的作用。<br>结论饮食结构能够通过调节微生物群的组成和功能来改善 PCOS 小鼠的肥胖样症状。
DOI: 10.6084/m9.figshare.29151992.v2
title: Supplementary Materials – THE EROSION OF THE NONDELEGATION DOCTRINE AND THE ARCHITECTURE OF DEMOCRATIC ACCOUNTABILITY

description: This file contains supplementary data and structured reference materials supporting the article "The Erosion of the Nondelegation Doctrine and the Architecture of Democratic Accountability," including precedent tables, doctrinal framework, and source annotations.
DOI: 10.6084/m9.figshare.5113366.v1
title: Data.xlsx

description: Data for seven figures.
DOI: 10.17632/ch6hbh6ybs
title: Supplemental Figure 1

description: Exo-endophytic tumor debulk histological slide from case No 28 (H&E 20X)
DOI: 10.6084/m9.figshare.16543602.v1
title: East Brazil Benthic Type Reference Sample

description: This benthic reference data is intended for use as a calibration and/or validation data for global scale remote sensing image based classification of coral reef areas. The data is in a vector shapefile format consisting of polygons labelled with one of seven coral reef benthic classes that include Microalgal Mats, Coral/Algae, Rubble, Rock, Seagrass Dense, Seagrass Sparse, Sand. <b>Please cite data as:</b> Borrego-Acevedo, R., Canto, R., Harris, D., Kennedy, E., Kovacs, E., Lyons, M., Markey, K., Murray, N., Ordonez Alvarez, A., Phinn, S., Roe, M., Roelfsema, C., Say, C., Tudman, P., C., Wolff, J., Yuwono, D., Bambric, B., Fox, H., Lieb, Z., Asner , G., Knapp , D., Li, J., Harris, B., Larsen, K. & Rice, K. 2021. East Brazil Benthic Type Reference Sample. University of Queensland. DOI: https://doi.org/10.6084/m9.figshare.16543602 <b>Links to supplementary information:</b> Mapping methods overview (https://allencoralatlas.org/methods/) UQ mapping team web site (https://www.rsrc.org.au/globalreef) Detailed mapping methods description by Lyons et al. (https://doi.org/10.1002/rse2.157) Detailed classification scheme description by Kennedy et al. (https://doi.org/10.1038/s41597-021-00958-z) Detailed reference creation description workflow by Roelfsema et al. (https://doi.org/10.3389/fmars.2021.643381) <b>Funding:</b> Vulcan Inc., (https://vulcan.com) Great Barrier Reef Foundation (https://www.barrierreef.org/) <b>Acknowledgement:</b> This work was initiated and funded primarily through Paul Allen Philanthropies and Vulcan Inc. as part of the Allen Coral Atlas. We acknowledge the late Paul Allen and Ruth Gates for their fundamental vision and drive to enable us to work together on this critical reef mapping problem. Project partners providing financial, service and personnel include: Planet Inc., National Geographic, University of Queensland, Arizona State University, and University of Hawai'i. Significant support has also been provided by Google Inc., Great Barrier Reef Foundation, and Trimble (Ecognition). Contributors to establishing and running the project include: Vulcan Inc. [James Deutsch, Lauren Kickam, Paulina Gerstner, Charlie Whiton, Kirk Larsen, Sarah Frias Torres, Kyle Rice, Eldan Goldenberg, Janet Greenlee]; Planet Inc. [Andrew Zolli, Trevor McDonald, Joe Mascaro, Joe Kington]; University of Queensland [Chris Roelfsema, Stuart Phinn, Emma Kennedy, Mitch Lyons, Nicholas Murray, Doddy Yuwono, Dan Harris, Eva Kovacs, Rodney Borrego, Meredith Roe, Jeremy Wolff, Kathryn Markey, Alexandra Ordonez, Chantal Say, Paul Tudman]; Arizona State University [Greg Asner, Dave Knapp, Jiwei Li, Yaping Xu, Nick Fabina, Heather D'Angelo]; and National Geographic [Helen Fox, Brianna Bambic, Brian Free, Zoe Lieb] and Great Barrier Reef Foundation [Petra Lundgren, Kirsty Bevan, Sarah Castine]. Attributions of contributed field data or maps for the reference sample creation are available at: https://allencoralatlas.org/attribution/
DOI: 10.6084/m9.figshare.26396404.v1
title: PRISMA-P-checklist Systematic Review Protocol - patient satisfaction and infection prevention and control measures

description: This document is a PRISMA-P Checklist for a systematic review protocol entitled:<br><br>"Patient satisfaction with infection prevention control practices in the acute hospital setting: a systematic review and meta-analysis protocol".<br>This checklist illustrates that the protocol and systematic review will be conducted in accordance with the PRISMA guidelines (Moher et al., 2015)