cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.vm3stz
title: Occurrence Download

description: A dataset containing 4870 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bleda syndactylus (Swainson, 1837)"
 ]
}

 The dataset includes 4870 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051059-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9yutfr
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lysimachia breviflora C.M.Hu"
 ]
}

 The dataset includes 9 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051061-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ay5m87
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melanochyla bracteata King"
 ]
}

 The dataset includes 30 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051062-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zwr42a
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Meconopsis atrovinosa Tosh.Yoshida & H.Sun"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051063-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eryhe6
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Macrotyloma prostratum Verdc."
 ]
}

 The dataset includes 17 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051064-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u4fh73
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Malaxis longipedunculata Ames"
 ]
}

 The dataset includes 20 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051065-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d8navs
title: Occurrence Download

description: A dataset containing 737 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pavonia malacophylla (Link & Otto) Hemsl."
 ]
}

 The dataset includes 737 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051066-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.5031386
title: Acetonitrile Solvent Box

description: The acetonitrile solvent boxed used in this study in a .xyz and .pdb file format
DOI: 10.6084/m9.figshare.5031410.v1
title: Data_Repository_Eastern_Alps.xlsx

description: 40Ar/39Ar data from 19 modern river sand samples within the Eastern Alps
DOI: 10.6084/m9.figshare.5031362
title: Water-soluble nitrogen and organic carbon for DWP, FL soils collected in 2014

description: Water soluble organic carbon and nitrogen (WSOC, WSN) analyzed by Li-Jung at PNNL-Sequim from soil pore water collected from intact and homogenized cores collected at the Disney Wilderness Preserve, Florida 2014. Cores collected for a Terrestrial Ecosystem Science project, lead by Vanessa Bailey at PNNL-Richland. Data linked to two separate manuscripts in revision and in prep. 22 May 2017
DOI: 10.6084/m9.figshare.5031284
title: R statistics Yunes Plos article

description: Statistic analises of a questionnaire survey about public views on animal production systems in Brazil
DOI: 10.6084/m9.figshare.5031362.v1
title: Water-soluble nitrogen and organic carbon for DWP, FL soils collected in 2014

description: Water soluble organic carbon and nitrogen (WSOC, WSN) analyzed by Li-Jung at PNNL-Sequim from soil pore water collected from intact and homogenized cores collected at the Disney Wilderness Preserve, Florida 2014. Cores collected for a Terrestrial Ecosystem Science project, lead by Vanessa Bailey at PNNL-Richland. Data linked to two separate manuscripts in revision and in prep. 22 May 2017
DOI: 10.6084/m9.figshare.5028860
title: PDB files used to generate .mol and .pot files

description: Structures in .pdb format of the terrein and isoterrein molecule immersed in explicit acetonitrile extracted from QM/MM MD simulations
DOI: 10.6084/m9.figshare.5031137
title: MXL/MESSy model data for the MEGAPOLI case

description: Model datasets of all experiments for a case study of the diurnal organic aerosol evolution at the SIRTA site during the MEGAPOLI campaign in Paris<br>
DOI: 10.6084/m9.figshare.5031284.v2
title: R statistics Yunes Plos article

description: Statistic analises of a questionnaire survey about public views on animal production systems in Brazil
DOI: 10.6084/m9.figshare.5028860.v1
title: PDB files used to generate .mol and .pot files

description: Structures in .pdb format of the terrein and isoterrein molecule immersed in explicit acetonitrile extracted from QM/MM MD simulations
DOI: 10.6084/m9.figshare.5028848
title: Spectral data for each snapshot

description: Here are four archives with raw data extracted from the log-files of PE-EFF-B3LYP/pcseg-2 calculations.<br><b>m1</b>: (+)-isoterrein<br><b>m2</b>: (-)-terrein<br><b>m3</b>: (+)-isoterrein<br><b>m4</b>: (-)-terrein<br><br>The snapshots are numbered according to the following (not so obvious scheme):<br>Files within the archives that are:<br>ending in *0.dat are extracted at 500ns<br>ending in *9.dat are extracted at 1000 ns<br>ending in *8.dat are extracted at 1500 ns<br>ending in *7.dat are extracted at 2000 ns<br>ending in *6.dat are extracted at 1250 ns<br>ending in *5.dat are extracted at 1750 ns<br>
DOI: 10.6084/m9.figshare.5028857
title: Input and output from DALTON calculations

description: .mol and .pot input files and logs to use with DALTON to reproduce the numbers used in this study<br><b>m1</b>: (+)-isoterrein<br><b>m2</b>: (-)-terrein<br><b>m3</b>: (+)-isoterrein<br><b>m4</b>: (-)-terrein<br><br>The snapshots are numbered according to the following (not so obvious scheme):<br>File structure is:m?/m?_XXXX_pcseg-2.mol<br>where m? refers to either m1, m2, m3 or m4 and XXXX is the snapshot number used. The snapshot number uses the following not-so-obvious naming convention:<br>ending in XXX0 are extracted at 500ns<br>ending in XXX9 are extracted at 1000 nsending in XXX8 are extracted at 1500 nsending in XXX7 are extracted at 2000 nsending in XXX6 are extracted at 1250 nsending in XXX5 are extracted at 1750 ns
DOI: 10.6084/m9.figshare.5031137.v1
title: MXL/MESSy model data for the MEGAPOLI case

description: Model datasets of all experiments for a case study of the diurnal organic aerosol evolution at the SIRTA site during the MEGAPOLI campaign in Paris<br>
DOI: 10.6084/m9.figshare.5031284.v1
title: R statistics Yunes Plos article

description: Statistic analises of a questionnaire survey about public views on animal production systems in Brazil
DOI: 10.6084/m9.figshare.5028845
title: GP_Geometries_AA.zip

description: 50,000 .xyz files corresponding to the same number of physically-plausible multi-chromopore structures. We generated the structures through rigidly displacing and rotating the chromophores from their positions in the naturally occurring Fenna-Matthews-Olson pigment-protein complex. The unperturbed structure is the first in this set Geometry_00001.xyz . <br>The files each list the position vectors of 608 atoms that define the structure. The units are Angstroms. We recommend viewing these files in vmd (free software available at http://www.ks.uiuc.edu/Research/vmd/ ). <br>The structures were constrained geometrically. Please see the linked paper for more information (also https://arxiv.org/abs/1704.01795 ).
DOI: 10.6084/m9.figshare.5028848.v1
title: Spectral data for each snapshot

description: Here are four archives with raw data extracted from the log-files of PE-EFF-B3LYP/pcseg-2 calculations.<br><b>m1</b>: (+)-isoterrein<br><b>m2</b>: (-)-terrein<br><b>m3</b>: (+)-isoterrein<br><b>m4</b>: (-)-terrein<br><br>The snapshots are numbered according to the following (not so obvious scheme):<br>Files within the archives that are:<br>ending in *0.dat are extracted at 500ns<br>ending in *9.dat are extracted at 1000 ns<br>ending in *8.dat are extracted at 1500 ns<br>ending in *7.dat are extracted at 2000 ns<br>ending in *6.dat are extracted at 1250 ns<br>ending in *5.dat are extracted at 1750 ns<br>
DOI: 10.6084/m9.figshare.5028824.v1
title: Figure of (S)-cyclohexa-2,4-dien-1-ol

description: The structure of (S)-cyclohexa-2,4-dien-1-ol with and without labels
DOI: 10.6084/m9.figshare.5028845.v1
title: GP_Geometries_AA.zip

description: 50,000 .xyz files corresponding to the same number of physically-plausible multi-chromopore structures. We generated the structures through rigidly displacing and rotating the chromophores from their positions in the naturally occurring Fenna-Matthews-Olson pigment-protein complex. The unperturbed structure is the first in this set Geometry_00001.xyz . <br>The files each list the position vectors of 608 atoms that define the structure. The units are Angstroms. We recommend viewing these files in vmd (free software available at http://www.ks.uiuc.edu/Research/vmd/ ). <br>The structures were constrained geometrically. Please see the linked paper for more information (also https://arxiv.org/abs/1704.01795 ).
DOI: 10.6084/m9.figshare.5028770
title: Supplementary material for "A Design-Build-Test cycle using modeling and experiments reveals interdependencies between upper glycolysis and xylose uptake in recombinant S. cerevisiae and improves predictive capabilities of large-scale kinetic models" by Miskovic et al.

description: Matlab files containing sets of computed flux and concentration control coefficients together with sampled concentrations, steady-state reference flux profile and stoichiometric matrix used for computations in the manuscript " A Design-Build-Test cycle using modeling and experiments reveals interdependencies between upper glycolysis and xylose uptake in recombinant <i>S. cerevisiae </i>and improves predictive capabilities of large-scale kinetic models" by Miskovic et al.
DOI: 10.6084/m9.figshare.5028755
title: Data Repository - Combining robotic training and inactivation of the healthy hemisphere restores pre-stroke motor patterns in mice

description: Data Repository - The excel data files are renamed following the order of the figure names, as they appear on the main text.
DOI: 10.6084/m9.figshare.5028770.v2
title: Supplementary material for "A Design-Build-Test cycle using modeling and experiments reveals interdependencies between upper glycolysis and xylose uptake in recombinant S. cerevisiae and improves predictive capabilities of large-scale kinetic models" by Miskovic et al.

description: Matlab files containing sets of computed flux and concentration control coefficients together with sampled concentrations, steady-state reference flux profile and stoichiometric matrix used for computations in the manuscript " A Design-Build-Test cycle using modeling and experiments reveals interdependencies between upper glycolysis and xylose uptake in recombinant <i>S. cerevisiae </i>and improves predictive capabilities of large-scale kinetic models" by Miskovic et al.
DOI: 10.6084/m9.figshare.5028773
title: GP_library_eV.zip

description: 50,000 Hamiltonian matrices describing FMO-like multi-chromophore systems. These are represented as 8x8 matrices, stored as comma separated values in electronvolts. Each matrix has been calculated with an atomic transition charge method, and relates to a structure obtained from the canonical Fenna-Matthews-Olson complex through rigid geometric perturbations of the chromophores. <br>Please see linked paper for more information.The off-diagonal entries should be scaled by a dielectric factor f=0.8, and the diagonal entries replaced with [1.43198,1.4150,1.40496,1.41797,1.41797,1.42802,1.42591,1.42405] to make them consistent with our paper.
DOI: 10.6084/m9.figshare.5028755.v1
title: Data Repository - Combining robotic training and inactivation of the healthy hemisphere restores pre-stroke motor patterns in mice

description: Data Repository - The excel data files are renamed following the order of the figure names, as they appear on the main text.
DOI: 10.6084/m9.figshare.5028770.v1
title: SupplementaryMaterial for "A Design-Build-Test cycle using modeling and experiments reveals interdependencies between upper glycolysis and xylose uptake in recombinant S. cerevisiae and improves predictive capabilities of large-scale kinetic models" by Miskovic et al.

description: Matlab files containing sets of computed flux and concentration control coefficients together with sampled concentrations, steady-state reference flux profile and stoichiometric matrix used for computations in the manuscript " A Design-Build-Test cycle using modeling and experiments reveals interdependencies between upper glycolysis and xylose uptake in recombinant S. cerevisiae and improves predictive capabilities of large-scale kinetic models" by Miskovic et al.
DOI: 10.6084/m9.figshare.5028704.v1
title: raw data- scientific report.xlsx

description: This file is the total raw data All positive data are recorded as 1; negative as 0All the sheets of excel are classified as all tables presented in the paper
DOI: 10.6084/m9.figshare.5028494
title: Supplementary tables from Collective foraging in spatially complex nutritional environments

description: Tables S1-S4
DOI: 10.6084/m9.figshare.5028494.v1
title: Supplementary tables from Collective foraging in spatially complex nutritional environments

description: Tables S1-S4
DOI: 10.6084/m9.figshare.5028410
title: Data from Motorboat noise impacts parental behaviour and offspring survival in a reef fish

description: Anthropogenic noise is a pollutant of international concern, with mounting evidence of disturbance and impacts on animal behaviour and physiology. However, empirical studies measuring survival consequences are rare. We use a field experiment to investigate how repeated motorboat-noise playback affects parental behaviour and offspring survival in the spiny chromis (<i>Acanthochromis polyacanthus</i>), a brooding coral reef fish. Repeated observations were made for 12 days at 38 natural nests with broods of young. Exposure to motorboat-noise playback compared to ambient-sound playback increased defensive acts, and reduced both feeding and offspring interactions by brood-guarding males. Anthropogenic noise did not affect the growth of developing offspring, but reduced the likelihood of offspring survival; while offspring survived at all 19 nests exposed to ambient-sound playback, six of the 19 nests exposed to motorboat-noise playback suffered complete brood mortality. Our study, providing field-based experimental evidence of the consequences of anthropogenic noise, suggests potential fitness consequences of this global pollutant.
DOI: 10.6084/m9.figshare.5028410.v1
title: Data from Motorboat noise impacts parental behaviour and offspring survival in a reef fish

description: Anthropogenic noise is a pollutant of international concern, with mounting evidence of disturbance and impacts on animal behaviour and physiology. However, empirical studies measuring survival consequences are rare. We use a field experiment to investigate how repeated motorboat-noise playback affects parental behaviour and offspring survival in the spiny chromis (<i>Acanthochromis polyacanthus</i>), a brooding coral reef fish. Repeated observations were made for 12 days at 38 natural nests with broods of young. Exposure to motorboat-noise playback compared to ambient-sound playback increased defensive acts, and reduced both feeding and offspring interactions by brood-guarding males. Anthropogenic noise did not affect the growth of developing offspring, but reduced the likelihood of offspring survival; while offspring survived at all 19 nests exposed to ambient-sound playback, six of the 19 nests exposed to motorboat-noise playback suffered complete brood mortality. Our study, providing field-based experimental evidence of the consequences of anthropogenic noise, suggests potential fitness consequences of this global pollutant.
DOI: 10.6084/m9.figshare.5028407
title: Supplementary Table 1 from Global biogeography since Pangaea

description: Summary of Palaeomagnetic Geological Data
DOI: 10.6084/m9.figshare.5028401
title: Supplementary Table 3 from Global biogeography since Pangaea

description: Average of Palaeomagnetic and Phylogenetic Data
DOI: 10.6084/m9.figshare.5028407.v1
title: Supplementary Table 1 from Global biogeography since Pangaea

description: Summary of Palaeomagnetic Geological Data
DOI: 10.6084/m9.figshare.5028389
title: Supplementary Table 2 from Global biogeography since Pangaea

description: Summary of Phylogenetic Biological Data
DOI: 10.6084/m9.figshare.5028401.v1
title: Supplementary Table 3 from Global biogeography since Pangaea

description: Average of Palaeomagnetic and Phylogenetic Data
DOI: 10.6084/m9.figshare.5028383
title: ESM_2 from Yolk vitamin E prevents oxidative damage in gull hatchlings

description: Complete Data set
DOI: 10.6084/m9.figshare.5028374
title: Dataset of platanistoid crest measurements from A new fossil dolphin <i>Dilophodelphis fordycei</i> provides insight into the evolution of supraorbital crests in Platanistoidea (Mammalia, Cetacea)

description: Table of crest measurements from platanistoids used in relative crest size analysis (figure 7)
DOI: 10.6084/m9.figshare.5028380
title: Data from Motorboat noise impacts parental behaviour and offspring survival in a reef fish

description: Anthropogenic noise is a pollutant of international concern, with mounting evidence of disturbance and impacts on animal behaviour and physiology. However, empirical studies measuring survival consequences are rare. We use a field experiment to investigate how repeated motorboat-noise playback affects parental behaviour and offspring survival in the spiny chromis (<i>Acanthochromis polyacanthus</i>), a brooding coral reef fish. Repeated observations were made for 12 days at 38 natural nests with broods of young. Exposure to motorboat-noise playback compared to ambient-sound playback increased defensive acts, and reduced both feeding and offspring interactions by brood-guarding males. Anthropogenic noise did not affect the growth of developing offspring, but reduced the likelihood of offspring survival; while offspring survived at all 19 nests exposed to ambient-sound playback, six of the 19 nests exposed to motorboat-noise playback suffered complete brood mortality. Our study, providing field-based experimental evidence of the consequences of anthropogenic noise, suggests potential fitness consequences of this global pollutant.
DOI: 10.6084/m9.figshare.5028383.v1
title: ESM_2 from Yolk vitamin E prevents oxidative damage in gull hatchlings

description: Complete Data set
DOI: 10.6084/m9.figshare.5028374.v1
title: Dataset of platanistoid crest measurements from A new fossil dolphin <i>Dilophodelphis fordycei</i> provides insight into the evolution of supraorbital crests in Platanistoidea (Mammalia, Cetacea)

description: Table of crest measurements from platanistoids used in relative crest size analysis (figure 7)
DOI: 10.6084/m9.figshare.5028239
title: U–Pb zircon geochronology of Cretaceous arc magmatism in eastern Chukotka, NE Russia, with implications for Pacific plate subduction and the opening of the Amerasia Basin

description: Geochemistry data table.
DOI: 10.6084/m9.figshare.5028242
title: U–Pb zircon geochronology of Cretaceous arc magmatism in eastern Chukotka, NE Russia, with implications for Pacific plate subduction and the opening of the Amerasia Basin

description: SIMS U–Pb data table.
DOI: 10.6084/m9.figshare.5028239.v1
title: U–Pb zircon geochronology of Cretaceous arc magmatism in eastern Chukotka, NE Russia, with implications for Pacific plate subduction and the opening of the Amerasia Basin

description: Geochemistry data table.
DOI: 10.6084/m9.figshare.5028242.v1
title: U–Pb zircon geochronology of Cretaceous arc magmatism in eastern Chukotka, NE Russia, with implications for Pacific plate subduction and the opening of the Amerasia Basin

description: SIMS U–Pb data table.
DOI: 10.6084/m9.figshare.5028212
title: Springer Nature 2017_Social Media Survey

description: Data linked to the Springer Nature 2017 social media and scholarly collaboration network survey
DOI: 10.6084/m9.figshare.5028191
title: How predation shapes the social interaction rules of shoaling fish

description: Variables measured for the groups of 8 and pairs of fish
DOI: 10.6084/m9.figshare.5028173
title: The model outputs and the CoupModel source code used for simulating a high arctic heath tundra ecosystem

description: These data sets are in support of the manuscript "Long-term carbon budget and ecosystem response to climate variability for a high arctic tundra ecosystem", which is submitted to Journal of Geophysical Research: Biogeosciences. <b></b>The data sets consist of module outputs from an ensemble of 27 accepted runs in the CoupModel. The files are organized in binary format, and should be open using the software "CoupModel". <br>The CoupModel source code refers to the version of CoupModel used in the manuscript. <br>The CoupModel is free downloadable in the website (www.coupmodel.com).
DOI: 10.6084/m9.figshare.5028173.v1
title: The CoupModel Ensemble for Zackenberg Heath Simulation

description: This data sets are in support for the manuscript "Long-term carbon budget and ecosystem response to climate variability for a high arctic tundra ecosystem", which is submiited to Journal of Geophysical Research: Biogeosciences. <b></b>The data sets consist of an ensemble of 27 accepted runs in the CoupModel. The file is in binary format, and should be open by the software "CoupModel". <br>The CoupModel is free downloadable in the website (www.coupmodel.com).
DOI: 10.6084/m9.figshare.5028116
title: African Orussidae 2017

description: A morphological data matrix for the parasitoid wasp family Orussidae used for exploring the phylogeny and biogeography of the african fauna of the family in particular<br>
DOI: 10.6084/m9.figshare.5028116.v1
title: African Orussidae 2017

description: A morphological data matrix for the parasitoid wasp family Orussidae used for exploring the phylogeny and biogeography of the african fauna of the family in particular<br>
DOI: 10.6084/m9.figshare.5028173.v2
title: The model outputs of the CoupModel in simulating a high arctic heath tundra ecosystem

description: These data sets are in support of the manuscript "Long-term carbon budget and ecosystem response to climate variability for a high arctic tundra ecosystem", which is submitted to Journal of Geophysical Research: Biogeosciences. <b></b>The data sets consist of module outputs from an ensemble of 27 accepted runs in the CoupModel. The files are organized in binary format, and should be open using the software "CoupModel". <br>The CoupModel is free downloadable in the website (www.coupmodel.com).
DOI: 10.6084/m9.figshare.5028074
title: PDFExtractor_from_PDF_management_system_source.zip

description: test