cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6840533
title: Soil bacterial community is associated with high potato production and minimal water use

description: In agriculture, water consumption for crop production represents 69% of all water use. Precision irrigation systems based on available soil water have been developed to improve crop production, reducing water use. Besides the improvements in irrigation management, a better resolution of the optimal water level is required, and revealing the impact of soil matric potential on the soil microbial community may help. Here, the effect of four soil matric potential treatments (-15 kPa, -25 kPa, -30 kPa, and -45 kPa) was evaluated on the soil microbial community across three potato cultivars and two soil types (silt and sand). The results confirmed the soil matric potential with -25 kPa as the optimal irrigation level, which promoted high potato production using the minimal water use. The irrigation levels affected the composition, predicted functionality, and ecological network of soil bacterial community. Water excess (-15 kPa) and deficit (-30 kPa, and -45 kPa) promoted an increase in microbial interaction and alpha-diversity. The results suggested higher Positive/Negative ratio for phyla <i>Proteobacteria, Actinobacteria, </i>and <i>Acidobacteria </i>in optimal irrigation level (-25 kPa) than other irrigation levels. Also, correlation analyses revealed an interesting association between the irrigation levels, potato production, and bacterial functionality, especially in carbon cycle (fixation and emission). Therefore, this study proposed important associations between the soil bacterial community and water management, focusing on high potato production and minimal water use. The advancement of this knowledge may lead to a more comprehensive assessment of the optimal irrigation levels of others crop production systems. Furthermore, the inclusion of biological mechanisms, especially microbial interactions, in agriculture studies has the potential to contribute to the development of water management practices conducive to both increasing crop yield and maintaining a sustainable soil environment.
DOI: 10.6084/m9.figshare.6840575.v3
title: Confocal micrograph measurements of GRMD and WT canine nueromuscular junctions

description: Confocal micrographs were collected on either a Leica TPS II SP5 or a Zeiss LSM780 microscope using a 40X Oil objective (NA 1.4). Step size was set between 300-500 nm. Laser lines 405 nm, 458 nm, 488 nm, 563 nm, and 633 nm were used as necessary. Images were analyzed in ImageJ (ImageJ, RRID:SCR_003070) by creating maximum projection images from collected stacks. Junctional Area was calculated by thresholding the fluorescent bungarotoxin labeled channel and drawing a polygon around the object and measuring the shape’s area. Receptor Area was measured as the thresholded area of the BTX label within the circumscribed region of the AChR. Dispersion Index was calculated as Receptor Area/Junctional Area. The number of AChR fragments (fragmentation) was measured using the objects counter in ImageJ by setting the minimum area for counts as 5 μm2. tSC counts were made by counting only fluorescently labeled Schwann cells in proximity to the endplate having coincident nuclear label via DAPI. Axon branch points were measured by creating 3D rotations of the confocal images of fluorescently labeled motor neurons, and then counting the number of times the axon split. Small varicosities of the motor terminal were not counted as branches.<br>Included is a lif file of confocal collections. Best viewed in ImageJ
DOI: 10.6084/m9.figshare.6840575.v2
title: Confocal micrograph measurements of GRMD and WT canine nueromuscular junctions

description: Confocal micrographs were collected on either a Leica TPS II SP5 or a Zeiss LSM780 microscope using a 40X Oil objective (NA 1.4). Step size was set between 300-500 nm. Laser lines 405 nm, 458 nm, 488 nm, 563 nm, and 633 nm were used as necessary. Images were analyzed in ImageJ (ImageJ, RRID:SCR_003070) by creating maximum projection images from collected stacks. Junctional Area was calculated by thresholding the fluorescent bungarotoxin labeled channel and drawing a polygon around the object and measuring the shape’s area. Receptor Area was measured as the thresholded area of the BTX label within the circumscribed region of the AChR. Dispersion Index was calculated as Receptor Area/Junctional Area. The number of AChR fragments (fragmentation) was measured using the objects counter in ImageJ by setting the minimum area for counts as 5 μm2. tSC counts were made by counting only fluorescently labeled Schwann cells in proximity to the endplate having coincident nuclear label via DAPI. Axon branch points were measured by creating 3D rotations of the confocal images of fluorescently labeled motor neurons, and then counting the number of times the axon split. Small varicosities of the motor terminal were not counted as branches.<br>Included is a lif file of confocal collections. Best viewed in ImageJ
DOI: 10.6084/m9.figshare.6840533.v1
title: Soil bacterial community is associated with high potato production and minimal water use

description: In agriculture, water consumption for crop production represents 69% of all water use. Precision irrigation systems based on available soil water have been developed to improve crop production, reducing water use. Besides the improvements in irrigation management, a better resolution of the optimal water level is required, and revealing the impact of soil matric potential on the soil microbial community may help. Here, the effect of four soil matric potential treatments (-15 kPa, -25 kPa, -30 kPa, and -45 kPa) was evaluated on the soil microbial community across three potato cultivars and two soil types (silt and sand). The results confirmed the soil matric potential with -25 kPa as the optimal irrigation level, which promoted high potato production using the minimal water use. The irrigation levels affected the composition, predicted functionality, and ecological network of soil bacterial community. Water excess (-15 kPa) and deficit (-30 kPa, and -45 kPa) promoted an increase in microbial interaction and alpha-diversity. The results suggested higher Positive/Negative ratio for phyla <i>Proteobacteria, Actinobacteria, </i>and <i>Acidobacteria </i>in optimal irrigation level (-25 kPa) than other irrigation levels. Also, correlation analyses revealed an interesting association between the irrigation levels, potato production, and bacterial functionality, especially in carbon cycle (fixation and emission). Therefore, this study proposed important associations between the soil bacterial community and water management, focusing on high potato production and minimal water use. The advancement of this knowledge may lead to a more comprehensive assessment of the optimal irrigation levels of others crop production systems. Furthermore, the inclusion of biological mechanisms, especially microbial interactions, in agriculture studies has the potential to contribute to the development of water management practices conducive to both increasing crop yield and maintaining a sustainable soil environment.
DOI: 10.6084/m9.figshare.6840530
title: Deck the walls by tunable energy fields for colloidal particles (Data)

description: pThe ability to dictate colloid motion is an important challenge in fields ranging from materials science to living systems. Here, by embedding energy landscapes in conned nematic liquid crystals, we design a versatile platform to dene colloidal migration. This is achieved by placing a wavy wall with alternating hills and wells in a nematic liquid crystal to impose a smooth elastic energy field with alternating splay and bend distortions. This domain generates (meta) stable loci that act as attractors and unstable loci that repel colloids over distances large compared to the colloid radius. Energy gradients in the vicinity of these loci are exploited to dictate colloid trajectories. We demonstrate several aspects of this control, by studying transitions between defect configurations, propelling particles along well defined paths and exploiting multistable systems to send particles to particular sites within the domain. Finally, we demonstrate the ability of a colloid in motion, like \Goldilocks", to select from wells of different sizes for preferred docking. Such tailored landscapes have promise in reconfigurable systems and in microrobotics applications./p
DOI: 10.6084/m9.figshare.6840461
title: Confocal micrograph measurements of mdx and WT mouse NMJs

description: Confocal micrographs were collected on either a Leica TPS II SP5 or a Zeiss LSM780 microscope using a 40X Oil objective (NA 1.4). Step size was set between 300-500 nm. Laser lines 405 nm, 458 nm, 488 nm, 563 nm, and 633 nm were used as necessary. Images were analyzed in ImageJ (ImageJ, RRID:SCR_003070) by creating maximum projection images from collected stacks. Junctional Area was calculated by thresholding the fluorescent bungartoxin labeled channel and drawing a polygon around the object and measuring the shape’s area. Receptor Area was measured as the thresholded area of the BTX label within the circumscribed region of the AChR. Dispersion Index was calculated as Receptor Area/Junctional Area. The number of AChR fragments (fragmentation) was measured using the objects counter in ImageJ by setting the minimum area for counts as 5 μm<sup>2</sup>. tSC counts were made by counting only fluorescently labeled Schwann cells in proximity to the endplate having coincident nuclear label via DAPI. Axon branch points were measured by creating 3D rotations of the confocal images of fluorescently labeled motor neurons, and then counting the number of times the axon split. Small varicosities of the motor terminal were not counted as branches. <br><br>Included is a compressed oib file of confocal collection. Best opened in ImageJ
DOI: 10.6084/m9.figshare.6840431
title: Accuracy of five systems for self-monitoring of blood glucose in the hands of adult lay-users and professionals applying ISO 15197:2013 accuracy criteria and potential insulin dosing errors

description: <b>Objective:</b> In this study, accuracy in the hands of intended users was evaluated for five self-monitoring of blood glucose (SMBG) systems based on ISO 15197:2013, and possibly related insulin dosing errors were calculated. In addition, accuracy was assessed in the hands of study personnel. <b>Methods:</b> For each system (Accu-Chek<sup>1</sup> Aviva Connect [A], Contour<sup>2</sup> Next One [B], FreeStyle Freedom Lite<sup>3</sup> [C], GlucoMen<sup>4</sup> areo [D] and OneTouch Verio<sup>5</sup> [E]) one test strip lot was evaluated as required by ISO 15197:2013, clause 8. Number and percentage of SMBG measurements within ±15 mg/dl and ±15% of the comparison measurements at glucose concentrations &lt;100 mg/dl and ≥100 mg/dl, respectively, were calculated. In addition, data is presented in surveillance error grids, and insulin dosing errors were modeled. The study was registered at ClinicalTrials.gov (NCT03033849). <b>Results:</b> Four systems (A, B, C, D) fulfilled the tested reagent system lot ISO 15197:2013 accuracy criteria with the tested reagent system lot with at least 95% (lay-users) and 99.5% (study personnel) of results within the defined limits. Measurements with all five systems were within the clinically acceptable zones of the consensus error grid and the surveillance error grid. Median modeled insulin dosing errors were between -0.8 and +0.6 units for measurements performed by lay-users and between -0.7 and +0.8 units for study personnel. Frequent lay-user errors were not checking the test strips’ expiry date, applying blood incorrectly and handling the device incorrectly. <b>Conclusion:</b> In this study, the systems showed slight differences in the number of results within ISO 15197:2013 accuracy limits. Inaccurate SMBG measurements can result in insulin dosing errors and adversely affect glycemic control.
DOI: 10.6084/m9.figshare.6840431.v1
title: Accuracy of five systems for self-monitoring of blood glucose in the hands of adult lay-users and professionals applying ISO 15197:2013 accuracy criteria and potential insulin dosing errors

description: <b>Objective:</b> In this study, accuracy in the hands of intended users was evaluated for five self-monitoring of blood glucose (SMBG) systems based on ISO 15197:2013, and possibly related insulin dosing errors were calculated. In addition, accuracy was assessed in the hands of study personnel. <b>Methods:</b> For each system (Accu-Chek<sup>1</sup> Aviva Connect [A], Contour<sup>2</sup> Next One [B], FreeStyle Freedom Lite<sup>3</sup> [C], GlucoMen<sup>4</sup> areo [D] and OneTouch Verio<sup>5</sup> [E]) one test strip lot was evaluated as required by ISO 15197:2013, clause 8. Number and percentage of SMBG measurements within ±15 mg/dl and ±15% of the comparison measurements at glucose concentrations &lt;100 mg/dl and ≥100 mg/dl, respectively, were calculated. In addition, data is presented in surveillance error grids, and insulin dosing errors were modeled. The study was registered at ClinicalTrials.gov (NCT03033849). <b>Results:</b> Four systems (A, B, C, D) fulfilled the tested reagent system lot ISO 15197:2013 accuracy criteria with the tested reagent system lot with at least 95% (lay-users) and 99.5% (study personnel) of results within the defined limits. Measurements with all five systems were within the clinically acceptable zones of the consensus error grid and the surveillance error grid. Median modeled insulin dosing errors were between -0.8 and +0.6 units for measurements performed by lay-users and between -0.7 and +0.8 units for study personnel. Frequent lay-user errors were not checking the test strips’ expiry date, applying blood incorrectly and handling the device incorrectly. <b>Conclusion:</b> In this study, the systems showed slight differences in the number of results within ISO 15197:2013 accuracy limits. Inaccurate SMBG measurements can result in insulin dosing errors and adversely affect glycemic control.
DOI: 10.6084/m9.figshare.6840365
title: Primary Descemet’s Membrane Endothelial Keratoplasty for Fuchs Endothelial Dystrophy versus Bullous Keratopathy: Histopathology and Clinical Results

description: <b>Purpose</b>: To investigate functional and anatomical results up to 12 months after Descemet’s membrane endothelial keratoplasty (DMEK) for Fuchs’ endothelial dystrophy (FED) versus bullous keratopathy (BK) in consideration of morphologic characteristics on host’s endothelium-Descemet’s membranes (EDM). <b>Methods</b>: In a prospective consecutive case series, 119 eyes underwent a primary DMEK for FED or BK. Intraoperatively obtained EDM were investigated immunohistologically. Clinical and morphological parameters were compared between FED and BK. <b>Results</b>: Overall, the 12-months best-corrected visual acuity (BCVA) was 0.14 logMAR, and 0.10 logMAR in eyes without vision-limiting comorbidities; thereby no differences were revealed between eyes with FED and BK up to 12 months postoperative (<i>p</i> = 0.186 and <i>p</i> = 0.095, respectively). Correspondingly, the mean central corneal thickness (CCT) measured 520 vs. 529 µm and the mean endothelial cell density (ECD) was 1743 vs. 1457 cells/mm<sup>2</sup> for FED and BK, 12 months postoperative. Regarding CCT and ECD, no differences were observed between the groups (<i>p</i> = 0.181 and <i>p</i> = 0.112, respectively). The overall detachment rate was 40% (48/119). Comparing FED and BK the detachment rates did not differ, which were 41% vs. 39% and 43% vs. 35%, in pseudophakic eyes (<i>p</i> = 0.554 and <i>p</i> = 0.601, respectively). Yet, the distribution of recurring graft detachments differed between FED and BK; secondary re-detachments were more frequent in the FED group (7 cases). Regarding histologic investigations, a lower ECD was found in specimens with BK, no differences were revealed for EDM and anterior banded layer thicknesses. Immunohistologically, differences in the distribution of fibronectin and cytokeratin were observed. A rarification of matrix proteins was found in EDM complexes with FED. <b>Conclusions</b>: DMEK produces similar results for FED and BK. However, the postoperative course may differ with regard to the recurrence of secondary graft detachments that may be associated by histopathologic particularities.
DOI: 10.6084/m9.figshare.6840365.v1
title: Primary Descemet’s Membrane Endothelial Keratoplasty for Fuchs Endothelial Dystrophy versus Bullous Keratopathy: Histopathology and Clinical Results

description: <b>Purpose</b>: To investigate functional and anatomical results up to 12 months after Descemet’s membrane endothelial keratoplasty (DMEK) for Fuchs’ endothelial dystrophy (FED) versus bullous keratopathy (BK) in consideration of morphologic characteristics on host’s endothelium-Descemet’s membranes (EDM). <b>Methods</b>: In a prospective consecutive case series, 119 eyes underwent a primary DMEK for FED or BK. Intraoperatively obtained EDM were investigated immunohistologically. Clinical and morphological parameters were compared between FED and BK. <b>Results</b>: Overall, the 12-months best-corrected visual acuity (BCVA) was 0.14 logMAR, and 0.10 logMAR in eyes without vision-limiting comorbidities; thereby no differences were revealed between eyes with FED and BK up to 12 months postoperative (<i>p</i> = 0.186 and <i>p</i> = 0.095, respectively). Correspondingly, the mean central corneal thickness (CCT) measured 520 vs. 529 µm and the mean endothelial cell density (ECD) was 1743 vs. 1457 cells/mm<sup>2</sup> for FED and BK, 12 months postoperative. Regarding CCT and ECD, no differences were observed between the groups (<i>p</i> = 0.181 and <i>p</i> = 0.112, respectively). The overall detachment rate was 40% (48/119). Comparing FED and BK the detachment rates did not differ, which were 41% vs. 39% and 43% vs. 35%, in pseudophakic eyes (<i>p</i> = 0.554 and <i>p</i> = 0.601, respectively). Yet, the distribution of recurring graft detachments differed between FED and BK; secondary re-detachments were more frequent in the FED group (7 cases). Regarding histologic investigations, a lower ECD was found in specimens with BK, no differences were revealed for EDM and anterior banded layer thicknesses. Immunohistologically, differences in the distribution of fibronectin and cytokeratin were observed. A rarification of matrix proteins was found in EDM complexes with FED. <b>Conclusions</b>: DMEK produces similar results for FED and BK. However, the postoperative course may differ with regard to the recurrence of secondary graft detachments that may be associated by histopathologic particularities.
DOI: 10.6084/m9.figshare.6840281
title: DBLP-derived labeled data for author name disambiguation

description: This is a DBLP-derived labeled data originally created by Dr. C. Lee Giles at Penn State University and filtered for duplicate removal and error correction by Dr. Jinseok Kim at University of Michigan. For more details, see references below.<br>1. Kim, Jinseok (2018). Evaluating author name disambiguation for digital libraries: a case of DBLP. Scientometrics. doi:10.1007/s11192-018-2824-5 <br>2. Kim, Jinseok & Kim, Jenna (2018). The impact of imbalanced training data on machine learning for author name disambiguation. Scientometrics. doi: 10.1007/s11192-018-2865-9<br>Each row refers to an author name instance with following feature information separated by tab.<br>author name: full name string extracted from DBLPunique author id: labels assigned manually by Dr. C. Lee Giles's teampaper id: assigned by Dr. Jinseok Kimauthor list: names of authors in the byline of the paperyear: publication yearvenue: conference or journal namestitle: stopwords removed and stemmed by the Porter's stemmer<br>If you want to use this dataset, please consider to cite papers below.<br>For the original dataset: Han, H., Giles, L., Zha, H., Li, C., & Tsioutsiouliklis, K. (2004). Two Supervised Learning Approaches for Name Disambiguation in Author Citations. JCDL 2004: Proceedings of the Fourth ACM/IEEE Joint Conference on Digital Libraries, 296-305. doi:10.1145/996350.996419<br><br>For the filtered dataset: 1. Kim, Jinseok (2018). Evaluating author name disambiguation for digital libraries: a case of DBLP. Scientometrics. doi:10.1007/s11192-018-2824-5 <br>or<br>2. Kim, Jinseok & Kim, Jenna (2018). The impact of imbalanced training data on machine learning for author name disambiguation. Scientometrics. doi: 10.1007/s11192-018-2865-9<br>
DOI: 10.6084/m9.figshare.6840245
title: Reynolds et al Kostënki 21/III lithic data

description: These files contain descriptive data and metadata for Anosovka points and shouldered points from the Upper Palaeolithic sites of Kostënki 21/III, Kostënki 11/II and Gagarino (Russia), used in the paper:<br>Reynolds, N., Germonpré, M., Bessudnov, A. A. & Sablin, M. V. (2019) The Late Gravettian Site of Kostënki 21 Layer III, Russia: a Chronocultural Reassessment Based on a New Interpretation of the Significance of Intra-site Spatial Patterning. <i>Journal of Paleolithic Archaeology</i> 2 (2): 160–210. <br><br>R code used in the paper is also included.
DOI: 10.6084/m9.figshare.6840281.v1
title: DBLP-derived labeled data for author name disambiguation

description: This is a DBLP-derived labeled data originally created by Dr. C. Lee Giles at Penn State University and filtered for duplicate removal and error correction by Dr. Jinseok Kim at University of Michigan. For more details, see references below.<br>1. Kim, Jinseok (2018). Evaluating author name disambiguation for digital libraries: a case of DBLP. Scientometrics. doi:10.1007/s11192-018-2824-5 <br>2. Kim, Jinseok & Kim, Jenna (2018). The impact of imbalanced training data on machine learning for author name disambiguation. Scientometrics. doi: 10.1007/s11192-018-2865-9<br>Each row refers to an author name instance with following feature information separated by tab.<br>author name: full name string extracted from DBLPunique author id: labels assigned manually by Dr. C. Lee Giles's teampaper id: assigned by Dr. Jinseok Kimauthor list: names of authors in the byline of the paperyear: publication yearvenue: conference or journal namestitle: stopwords removed and stemmed by the Porter's stemmer<br>If you want to use this dataset, please consider to cite papers below.<br>For the original dataset: Han, H., Giles, L., Zha, H., Li, C., & Tsioutsiouliklis, K. (2004). Two Supervised Learning Approaches for Name Disambiguation in Author Citations. JCDL 2004: Proceedings of the Fourth ACM/IEEE Joint Conference on Digital Libraries, 296-305. doi:10.1145/996350.996419<br><br>For the filtered dataset: 1. Kim, Jinseok (2018). Evaluating author name disambiguation for digital libraries: a case of DBLP. Scientometrics. doi:10.1007/s11192-018-2824-5 <br>or<br>2. Kim, Jinseok & Kim, Jenna (2018). The impact of imbalanced training data on machine learning for author name disambiguation. Scientometrics. doi: 10.1007/s11192-018-2865-9<br>
DOI: 10.6084/m9.figshare.6840179
title: data from "Dispersers are more likely to follow mucus trails in the land snail Cornu aspersum"

description: data from an experiment studying the link between dispersal status and trail following propensity in a snail. See metadata file for details about the content of the other two files.<br>
DOI: 10.6084/m9.figshare.6840179.v1
title: data from "Dispersers are more likely to follow mucus trails in the land snail Cornu aspersum"

description: data from an experiment studying the link between dispersal status and trail following propensity in a snail. See metadata file for details about the content of the other two files.<br>