cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.h77450k
title: Data from: Dark ophiuroid biodiversity in a prospective abyssal mine field

description: The seafloor contains valuable mineral resources, including polymetallic
 (or manganese) nodules that form on offshore abyssal plains. The largest
 and most commercially attractive deposits are located in the Clarion
 Clipperton Fracture Zone (CCZ), in the eastern Pacific Ocean (EP) between
 Hawaii and Mexico, where testing of a mineral collection system is set to
 start soon [1]. The requirement to establish pre-mining environmental
 management plans has prompted numerous recent biodiversity and DNA
 barcoding surveys across these remote regions. Here we map DNA sequences
 from sampled ophiuroids (brittle-stars, including post-larvae) of the CCZ
 and Peru Basin onto a substantial tree-of-life to show unprecedented
 levels of abyssal ophiuroid phylogenetic diversity including at least
 three ancient (&gt;70 my), previously unknown clades. While
 substantial dark (unobserved) biodiversity has been reported from various
 microbial meta-barcoding projects [2, 3], our data shows that we have
 considerably under-estimated the biodiversity of even the most conspicuous
 mega-faunal invertebrates [4] of the EP abyssal plain.
description: CCZ_ophiuroid_biodiversity_ReadMe_v1Information on files in the package and the study they refer toCCZ_SMv4b_t994Main phylogenetic supermatrix data file, zippedCCZ_SMv4b_t249_bst2fBEAST 2.4 xml file, zippedCCZ_SMv4b_locus_listCCZ_SMv4b_t994_RAxMLNewick format RAxML tree used for figures 1 and DataS1ACCZ_SMv4b_t249_BEAST_mccTree Annotator format BEAST MCC treeCCZ_ophiuroid_biodiversity_FigS1A_v3PDF of RAxML tree (Figure DataS1A)CCZ_ophiuroid_biodiversity_FigS1BC_v3PDF of BEAST tree (Figure DataS1B and C)CCZ_ophiuroid_biodiversity_Table_S1_v3Excel table of sample/OTU information
DOI: 10.15468/dl.k6wp6k
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diabolotherium nordenskioldi"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001908-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17909/pf09-9s85
title: Updating test DOI in Basket
DOI: 10.5061/dryad.179t103
title: Predaceous Toxorhynchites mosquitoes require a living gut microbiota to develop

description: Most species of mosquitoes are detritivores that feed on decaying plant
 and animal materials in their aquatic environment. Studies of several
 detritivorous mosquito species indicate they host relatively low diversity
 communities of microbes that are acquired from the environment while
 feeding. Our recent results also indicate that detritivorous species
 require a living gut microbiota in order to grow beyond the first instar.
 Less well known is that some mosquitoes, including those belonging to the
 genus Toxorhynchites, are predators that feed on other species of
 mosquitoes and other nektonic prey. In this study, we asked whether
 predaceous Toxorhynchites amboinensis larvae still require living microbes
 in their gut in order to develop. Using the detritivorous mosquito Aedes
 aegypti as prey, we found that T. amboinensis larvae harbour bacterial
 communities that are highly similar to that of their prey. Functional
 assays showed that T. amboinensis first instars provided axenic (i.e.
 bacteria-free) prey failed to develop, while two bacterial species present
 in gnotobiotic (i.e. colonised by one or more known bacterial species)
 prey successfully colonised the T. amboinensis gut and rescued
 development. Axenic T. amboinensis larvae also displayed defects in growth
 consistent with previously identified roles for microbe-mediated gut
 hypoxia in nutrient acquisition and assimilation in A. aegypti.
 Collectively, these results support a conserved role for gut microbes in
 regulating development of mosquitoes with different feeding strategies.
description: QIIME input
 sequencesseqs.fastaQIIME metadata filesample-metadata.txtRaw data files and R scriptRaw Data Files and R Script.zip
DOI: 10.5061/dryad.3kc37bb
title: Data from: Look to seedling heights, rather than functional traits, to explain survival during extreme heat stress in the early stages of subtropical rainforest restoration

description: 1. Ecological restoration is urgently needed to arrest and reverse land
 degradation, reinstate ecosystem services and recover threatened species.
 Tree planting is a commonly used strategy to restore forests, however
 planted seedlings often experience low survival and slow growth during the
 establishment period. Critical evaluation of factors that lead to poor
 establishment is vital to improve practice but is often constrained by a
 lack of monitoring and reporting. 2. We took advantage of a large
 monitoring dataset (~7,000 native trees from 23 species) to interrogate an
 extensive suite of environmental conditions and plant characteristics that
 potentially contributed to poor survival and growth of seedlings in a
 restoration planting in southeast Queensland, Australia. 3. The initial
 height of planted seedlings strongly influenced survival and growth.
 Intermediate heights generally performed best and the optimal heights for
 different species were significantly but weakly modulated by functional
 traits including SLA, lamina area and leaf structure (compound vs.
 simple). Survival was lowest when seedlings were planted in
 high-bulk-density soils on hot days, and growth was fastest in plots with
 higher average elevation. 4. Synthesis and applications. In this large
 restoration experiment in Australia’s subtropics, initial seedling height
 was a much better predictor of rainforest seedling survival than plant
 functional traits. We recommend planting rainforest seedlings between 25
 and 35 cm tall, especially in restoration projects facing a high
 likelihood of hot weather during planting and establishment.
description: Oxley Project
 1R
 Project executed in RStudio with sub-folders 'Data' (raw data
 files), 'Outputs' (figure and table outputs from R) and
 'R' (custom R functions used in the
 analyses).
DOI: 10.5061/dryad.67c92vm
title: Data from: Simultaneous measurement of excitation-contraction coupling parameters identifies mechanisms underlying contractile responses of hiPSC-derived cardiomyocytes

description: Cardiomyocytes from human induced pluripotent stem cells (hiPSC-CMs) are
 increasingly recognized as valuable for determining the effects of drugs
 on ion channels but they do not always accurately predict contractile
 responses of the human heart. This is in part attributable to their
 immaturity but the sensitivity of measurement tools may also be limiting.
 Measuring action potential, calcium flux or contraction individually
 misses critical information that is captured when interrogating the
 complete excitation-contraction coupling cascade simultaneously. Here, we
 develop an hypothesis-based statistical algorithm that identifies
 mechanisms of action. We design and build a high-speed optical system to
 measure action potential, cytosolic calcium and contraction simultaneously
 using fluorescent sensors. These measurements are automatically processed,
 quantified and then assessed by the algorithm. Multiplexing these three
 critical physical features of hiPSC-CMs allows identification of all major
 drug classes affecting contractility with detection sensitivities higher
 than individual measurement of action potential, cytosolic calcium or
 contraction.
description: Source
 Data
DOI: 10.5061/dryad.1b58p8m
title: Data from: Effect of culling on individual badger Meles meles behaviour: potential implications for bovine tuberculosis transmission

description: 1. Culling wildlife as a form of disease management can have unexpected
 and sometimes counterproductive outcomes. In the UK, badgers (Meles meles)
 are culled in efforts to reduce badger-to-cattle transmission of
 Mycobacterium bovis, the causative agent of bovine tuberculosis (TB).
 However, culling has previously been associated with both increased and
 decreased incidence of M. bovis infection in cattle. 2. The adverse
 effects of culling have been linked to cull-induced changes in badger
 ranging, but such changes are not well documented at the individual level.
 Using GPS-collars, we characterised individual badger behaviour within an
 area subjected to widespread industry-led culling, comparing it with the
 same area before culling and with three unculled areas. 3. Culling was
 associated with a 61% increase (95% CI 27-103%) in monthly home range
 size, a 39% increase (95% CI 28-51%) in nightly maximum distance from the
 sett, and a 17% increase (95% CI 11-24%) in displacement between
 successive GPS-collar locations recorded at 20-minute intervals. Despite
 travelling further, we found a 91.2 minute (95% CI 67.1-115.3 minute)
 reduction in the nightly activity time of individual badgers associated
 with culling. These changes became apparent while culls were ongoing and
 persisted after culling ended. 4. Expanded ranging in culled areas was
 associated with individual badgers visiting 45% (95% CI 15-80%) more
 fields each month, suggesting that surviving individuals had the
 opportunity to contact more cattle. Moreover, surviving badgers showed a
 19.9-fold increase (95% CI 10.8-36.4 increase) in the odds of trespassing
 into neighbouring group territories, increasing opportunities for
 intergroup contact. 5. Synthesis and Applications: Badger culling was
 associated with behavioural changes among surviving badgers which
 potentially increased opportunities for both badger-to-badger and
 badger-to-cattle transmission of M. bovis. Furthermore, by reducing the
 time badgers spent active, culling may have reduced badgers’ accessibility
 to shooters, potentially undermining subsequent population control
 efforts. Our results specifically illustrate the challenges posed by
 badger behaviour to cull-based TB control strategies and furthermore, they
 highlight the negative impacts culling can have on integrated disease
 control strategies.
description: Effects of culling on
 individual badger behaviourData files for the
 analysis of individual badger: home range area, nightly distance
 travelled, 20-minute step-length, emergence time, return time, nightly
 activity time, maximum distance travelled from the sett and
 trespassing.EffectsOfBadgerCulling_23Aug19.zip
DOI: 10.15468/dl.2zn9qz
title: Occurrence Download

description: A dataset containing 168 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Etmopterus bullisi"
 ]
}

 The dataset includes 168 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001909-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.26ps7m4
title: Data from: Predation drives the evolution of brain cell proliferation and brain allometry in male Trinidadian killifish, Rivulus hartii

description: The external environment influences brain cell proliferation, and this
 might contribute to brain plasticity underlying adaptive behavioural
 changes. Additionally, internal genetic factors influence brain cell
 proliferation rate. However, to date, researchers have not examined the
 importance of environmental vs. genetic factors in causing natural
 variation in brain cell proliferation. Here, we examine brain cell
 proliferation and brain growth trajectories in free-living populations of
 Trinidadian killifish, Rivulus hartii, exposed to contrasting predation
 environments. Compared to populations without predators, populations in
 high predation environments exhibited higher rates of brain cell
 proliferation and a steeper brain growth trajectory (relative to body
 size). To test whether these differences in the wild persist in a common
 garden environment, we reared first generation fish originating from both
 predation environments in uniform laboratory conditions. Just as in the
 wild, brain cell proliferation and brain growth in the common garden were
 greater in high predation populations than in no predation populations.
 The similar results in field and common garden studies indicate that
 population differences in these brain features are intrinsic, probably
 genetic, differences arising from natural selection acting on overall
 brain growth and life history rather than differences arising through
 phenotypic plasticity.
description: Rivulus Brain Allometry
 FieldBody mass and brain mass
 from six populations of Rivulus that differ in predation
 pressure.Dunlap Rivulus Brain
 Allometry.xlsxRivulus Brain Allometry
 CaptiveBody mass and brain mass
 from 4 Rivulus captive populations that differ in predation
 pressureDunlap Captive
 Allometry.xlsxCell proliferation-
 FieldBrain cell proliferation
 (PCNA+ cells/mm3) in wild populations that differ in predation
 pressureDunlap-Walsh-Rivulus-PCNA
 Data-Field Pop.xlsxCell proliferation-
 CaptiveCell proliferation
 (PCNA+ cells/mm3) in 4 captive Rivulus populations that differ in
 predation pressure.Dunlap-Walsh Rivulus-PCNA
 Data-Captive.xlsx
DOI: 10.5061/dryad.803qk45
title: Data from: Positive allosteric modulation of the α7 nicotinic acetylcholine receptor as a treatment for cognitive deficits after traumatic brain injury

description: Cognitive impairments are a common consequence of traumatic brain injury
 (TBI). The hippocampus is a subcortical structure that plays a key role in
 the formation of declarative memories and is highly vulnerable to TBI. The
 α7 nicotinic acetylcholine receptor (nAChR) is highly expressed in the
 hippocampus and reduced expression and function of this receptor are
 linked with cognitive impairments in Alzheimer’s disease and
 schizophrenia. Positive allosteric modulation of α7 nAChRs with AVL-3288
 enhances receptor currents and improves cognitive functioning in naïve
 animals and healthy human subjects. Therefore, we hypothesized that
 targeting the α7 nAChR with the positive allosteric modulator AVL-3288
 would enhance cognitive functioning in the chronic recovery period of TBI.
 To test this hypothesis, adult male Sprague Dawley rats received moderate
 parasagittal fluid-percussion brain injury or sham surgery. At 3 months
 after recovery, animals were treated with vehicle or AVL-3288 at 30 min
 prior to cue and contextual fear conditioning and the water maze task.
 Treatment of TBI animals with AVL-3288 rescued learning and memory
 deficits in water maze retention and working memory. AVL-3288 treatment
 also improved cue and contextual fear memory when tested at 24 hr and 1
 month after training, when TBI animals were treated acutely just during
 fear conditioning at 3 months post-TBI. Hippocampal atrophy but not
 cortical atrophy was reduced with AVL-3288 treatment in the chronic
 recovery phase of TBI. AVL-3288 application to acute hippocampal slices
 from animals at 3 months after TBI rescued basal synaptic transmission
 deficits and long-term potentiation (LTP) in area CA1. Our results
 demonstrate that AVL-3288 improves hippocampal synaptic plasticity, and
 learning and memory performance after TBI in the chronic recovery period.
 Enhancing cholinergic transmission through positive allosteric modulation
 of the α7 nAChR may be a novel therapeutic to improve cognition after TBI.
description: Data from PLOS ONE
 PONE-D-10-14787 Raw data in excel
 format Data
 PONE-D-10-14787.xlsx
DOI: 10.5281/zenodo.18393590
title: STRATEGIK BOSHQARUV VA PEDAGOGIK LIDERLIK UYG'UNLIGI OLIY TA'LIM MUASSASALAR SAMARADORLIGINI OSHIRISH OMILLARI

description: Ushbu maqolada oliy ta’lim muassasalarida strategik boshqaruv va pedagogik liderlikning o‘zaro uyg‘unlashuvi, ularning ta’lim sifati hamda boshqaruv samaradorligini oshirishdagi muhim o‘rni yoritiladi. Shuningdek, Oliy ta’lim muassasalari rivojida liderlik kompetensiyalarini kuchaytirish, innovatsion boshqaruvni qo‘llash va strategik maqsadlarni amaliyotga tatbiq etish bo‘yicha aniq tavsiyalar beriladi.
DOI: 10.5281/zenodo.18393591
title: STRATEGIK BOSHQARUV VA PEDAGOGIK LIDERLIK UYG'UNLIGI OLIY TA'LIM MUASSASALAR SAMARADORLIGINI OSHIRISH OMILLARI

description: Ushbu maqolada oliy ta’lim muassasalarida strategik boshqaruv va pedagogik liderlikning o‘zaro uyg‘unlashuvi, ularning ta’lim sifati hamda boshqaruv samaradorligini oshirishdagi muhim o‘rni yoritiladi. Shuningdek, Oliy ta’lim muassasalari rivojida liderlik kompetensiyalarini kuchaytirish, innovatsion boshqaruvni qo‘llash va strategik maqsadlarni amaliyotga tatbiq etish bo‘yicha aniq tavsiyalar beriladi.
DOI: 10.5061/dryad.ns674vd
title: Data from: Defining a spectrum of integrative trait-based vegetation canopy structural types

description: Vegetation canopy structure is a fundamental characteristic of terrestrial
 ecosystems that defines vegetation types and drives ecosystem functioning.
 We use the multivariate structural trait composition of vegetation
 canopies to classify ecosystems within a global canopy structure spectrum.
 Across the temperate forest subset of this spectrum we assess gradients in
 canopy structural traits, characterize canopy structural types (CST), and
 evaluate drivers and functional consequences of canopy structural
 variation. We derive CSTs from multivariate canopy structure data,
 illustrating variation along three primary structural axes and resolution
 into six largely distinct and functionally relevant CSTs. Our results
 illustrate that within-ecosystem successional processes and disturbance
 legacies can produce variation in canopy structure similar to that
 associated with sub-continental variation in forest types and ecoclimatic
 zones. The potential to classify ecosystems into CSTs based on suites of
 structural traits represents an important advance in understanding and
 modeling structure-function relationships in vegetated ecosystems.
description: Data Repository
 FilesData files and code used
 in analysis of forest canopy structure and derivation of canopy structural
 types.Fahey_et_al_Data.zip
DOI: 10.5061/dryad.j9r1j26
title: Data from: Methylmercury induces metabolic alterations in Caenorhabditis elegans: role for C/EBP transcription factor

description: Methylmercury (MeHg) is a well-known neurotoxicant; however, its role in
 metabolic diseases has been gaining wider attention. We have previously
 shown that MeHg causes metabolic alterations in Caenorhabditis elegans (C.
 elegans), leading to decreased nicotinamide adenine dinucleotide cofactor,
 mitochondrial dysfunction, and oxidative stress. We were therefore
 interested in whether MeHg also affects nutrient metabolism, particularly
 lipid homeostasis, which may contribute to the development of metabolic
 conditions such as obesity or metabolic syndrome (MS). RNA from wild-type
 worms exposed to MeHg was collected immediately after treatment, and used
 for gene expression analysis by DNA microarray. MeHg differentially
 regulated 215 genes, 46 were metabolic genes, 18 genes involved in lipid
 homeostasis, and 12 genes involved in carbohydrate homeostasis. Of
 particular interest was cebp-1, the worm ortholog to human C/EBP, a
 pro-adipogenic transcription factor implicated in MS. MeHg increased the
 expression of cebp-1 as well as pro-adipogenic transcription factors sbp-1
 and nhr-49, triglyceride synthesis enzyme acl-6, and lipid transport
 proteins vit-2 and vit-6. Concurrent with the altered gene expression,
 MeHg increased triglyceride levels, lipid storage, and feeding behaviors.
 Worms expressing mutant cebp-1 were protected from MeHg-induced
 alterations in lipid content, feeding behaviors, and gene expression,
 highlighting the importance of this transcription factor in the worm’s
 response to MeHg. Taken together, our data demonstrate that MeHg induces
 biochemical, metabolic, and behavioral changes in C. elegans that can lead
 to metabolic dysfunction.
description: Caito et al.
 supplemental genes upregulated and
 down-regulated by Methylmercury treatment   Caito et al.
 Supplemental.xlsx
DOI: 10.5281/zenodo.17324978
title: fabianriml/materialien-masterarbeit: Version 1.0

description: Materialien zur Masterarbeit: "Die Unterstützung des Lerngeschehens durch aktuelle KI-Technologien im Informatikunterricht der Sekundarstufe"

Die Masterarbeit ist abrufbar unter: https://bibsearch.uibk.ac.at/AC17750148

Autor: Fabian Riml (Universität Innsbruck, 2025)

Betreuer: Thomas Ströhle, MSc PhD

Lizenz: CC BY 4.0
DOI: 10.5281/zenodo.17324979
title: fabianriml/materialien-masterarbeit: Version 1.0

description: Materialien zur Masterarbeit: "Die Unterstützung des Lerngeschehens durch aktuelle KI-Technologien im Informatikunterricht der Sekundarstufe"

Die Masterarbeit ist abrufbar unter: https://bibsearch.uibk.ac.at/AC17750148

Autor: Fabian Riml (Universität Innsbruck, 2025)

Betreuer: Thomas Ströhle, MSc PhD

Lizenz: CC BY 4.0
DOI: 10.5061/dryad.k45541j
title: Data from: Environmental filtering structures fungal endophyte communities in tree bark

description: The factors that control the assembly and composition of endophyte
 communities across plant hosts remains poorly understood. This is
 especially true for endophyte communities inhabiting inner tree bark, one
 of the least studied components of the plant microbiome. Here, we test the
 hypothesis that bark of different tree species acts as an environmental
 filter structuring endophyte communities, as well as the alternative
 hypothesis, that bark acts as a passive reservoir that accumulates a
 diverse assemblage of spores and latent fungal life stages. We develop a
 means of extracting high‐quality DNA from surface sterilized tree bark to
 compile the first culture‐independent study of inner bark fungal
 communities. We sampled a total of 120 trees, spanning five dominant
 overstorey species across multiple sites in a mixed temperate hardwood
 forest. We find that each of the five tree species harbour unique
 assemblages of inner bark fungi and that angiosperm and gymnosperm hosts
 harbour significantly different fungal communities. Chemical components of
 tree bark (pH, total phenolic content) structure some of the differences
 detected among fungal communities residing in particular tree species.
 Inner bark fungal communities were highly diverse (mean of 117–171
 operational taxonomic units per tree) and dominated by a range of
 Ascomycete fungi living asymptomatically as putative endophytes. Together,
 our evidence supports the hypothesis that tree bark acts as an
 environmental filter structuring inner bark fungal communities. The role
 of these potentially ubiquitous and plant‐specific fungal communities
 remains uncertain and merits further study.
description: Dryad_Environmental.dataUD1, UD2, and PC, refer to the three site names studied. Please refer to map located in supplementary files with coordinates. WP, WO, BO, RP, RM refer to plant names, see manuscript for description.