cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/z609d-k6f84
title: Agro Bald VirB8-GFP

description: the bald strain lacks flagellin 1-3 and is considered non-motile
description: <strong>Tilt Series Date:</strong> 2013-07-02</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> cells were grown at 19C and induced for T4SS</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-02-5/rawdata/</p>bald_gfp20006.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-02-5/rawdata/bald_gfp20006.mrc"
        > <i class="download icon"></i> Download </a></p>

        bald_gfp20006_part121_4.rec,  Reconstruction (Pixel Size 1.92 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-02-5/3dimage_27801/bald_gfp20006_part121_4.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ecpg8-n9h84
title: E. coli pED208

description: E. coli with plasmid pED208
description: <strong>Tilt Series Date:</strong> 2014-12-16</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Laura Frost</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells arrived dead.</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-12-16-31/rawdata/</p>pED2080023.mrc,  Tilt Series (Pixel Size 0.63 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-12-16-31/rawdata/pED2080023.mrc"
        > <i class="download icon"></i> Download </a></p>

        pED2080023_part121_7.rec,  Reconstruction (Pixel Size 2.52 nm), 356.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-12-16-31/3dimage_48838/pED2080023_part121_7.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.xpk2ut
title: Occurrence Download

description: A dataset containing 270 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Atoconeura kenya, Atoconeura, Atoconeura eudoxia, Atoconeura aethiopica, Atoconeura luxata, Atoconeura biordinata, Allocnemis cyanura, Allocnemis, Trithemis, Elattoneura villiersi, Elattoneura, Thermochoria equivocata, Thermochoria, Thermochoria jeanneli, Ischnura elegans, Ischnura, Selysiothemis nigra, Selysiothemis, Hemistigma affine, Hemistigma, Aciagrion, Sympetrum fonscolombii, Sympetrum, Micromacromia camerunica, Micromacromia, Micromacromia zygoptera, Aethiothemis erythromelas, Aethiothemis, Aciagrion gracile, Aciagrion dondoense, Trithetrum navasi, Trithetrum, Trithetrum congoense, Aciagrion africanum, Trithemis tropicana, Hadrothemis vrijdaghi, Hadrothemis, Hadrothemis scabrifrons, Hadrothemis defecta, Hadrothemis camarensis, Hadrothemis versuta, Hadrothemis infesta, Hadrothemis coacta, Hemicordulia, Diastatomma multilineatum, Diastatomma, Mastigogomphus chapini, Mastigogomphus, Crenigomphus kavangoensis, Crenigomphus, Pseudagrion merina, Pseudagrion, Allocnemis marshalli, Hemicordulia asiatica, Microgomphus, Cordulegaster boltonii algirica, Cordulegaster boltonii, Cordulegaster, Hemicordulia similis, Allocnemis elongata, Orthetrum malgassicum, Orthetrum, Lestinogomphus silkeae, Lestinogomphus, Hemicordulia virens, Microgomphus nyassicus, Paragomphus serrulatus, Paragomphus, Aeshna isoceles, Aeshna, Neurocordulia, Mortonagrion stygium, Mortonagrion, Pyrrhosoma nymphula, Pyrrhosoma, Proplatycnemis pseudalatipes, Proplatycnemis, Neophya rutherfordi, Neophya, Allocnemis superba, Elattoneura vittata, Onychogomphus nigrotibialis, Onychogomphus, Cordulia, Cordulia aenea, Stenocypha molindica, Stenocypha, Platycypha picta, Platycypha, Syncordulia venator, Syncordulia, Syncordulia gracilis, Crocothemis, Metacnemis valida, Metacnemis, Crocothemis sanguinolenta, Crocothemis erythraea, Platycypha rufitibia, Crocothemis saxicolor, Crocothemis striata)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((45.0245 -12.136,44.6652 -11.6088,43.9782 -11.7142,43.8575 -11.1854,43.5561 -10.9013,42.9255 -11.043,42.7331 -11.7654,43.2052 -12.6542,43.4803 -12.8847,44.5705 -12.8806,44.7256 -13.3177,45.1376 -13.5063,45.5464 -13.3432,45.7456 -13.0171,45.7852 -12.6623,45.638 -12.4031,45.0245 -12.136))"
 ]
}

 The dataset includes 270 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045931-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/412sf-rf316
title: COS7 tfx pNL4GFP and VPS4B(E235Q)

description: Whole cell ECT of COS7 cell expressing pNLGFP and VPS4B(E235Q)
description: <strong>Tilt Series Date:</strong> 2012-03-15</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Cercopithecus aethiops (monkey, African green)</p>
<strong>Strain:</strong> COS-7 ATCC CRL-1651</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 1.5°, constant angular increment, dosage: 60.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> VPS4B (E235Q) expression construct provided by W.Sundquist (Utah); pNLGFP construct provided by I. Chen (UCLA)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> lipofectamine transfection</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-03-15-2/rawdata/</p>12mar15_c108_1_Cos7pNLDN_AT1bt10005.mrc,  Tilt Series (Pixel Size 0.9 nm), 561.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-03-15-2/rawdata/12mar15_c108_1_Cos7pNLDN_AT1bt10005.mrc"
        > <i class="download icon"></i> Download </a></p>

        12mar15_c108_1_Cos7pNLDN_AT1bt10005_full.rec,  Reconstruction (Pixel Size 1.8 nm), 722.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-03-15-2/3dimage_17707/12mar15_c108_1_Cos7pNLDN_AT1bt10005_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/2kpx8-jda48
title: Agro Bald VirB8-GFP

description: the bald strain lacks flagellin 1-3 and is considered non-motile
description: <strong>Tilt Series Date:</strong> 2013-07-02</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-30.0°, 30.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> cells were grown at 19C and induced for T4SS</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-02-24/rawdata/</p>bald_gfp20005.mrc,  Tilt Series (Pixel Size 0.48 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-02-24/rawdata/bald_gfp20005.mrc"
        > <i class="download icon"></i> Download </a></p>

        bald_gfp20005_full.rec,  Reconstruction (Pixel Size 1.92 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-02-24/3dimage_27836/bald_gfp20005_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/pr3v6-t3594
title: Agro C58 22C plate 16h

description: Raw data files of Agro C58 22C plate 16h
description: <strong>Tilt Series Date:</strong> 2014-11-10</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown at 22C and induced for T pili on a 2% agarose pad for 16 hours</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-11-10-25/rawdata/</p>c58_22_pl_16h20007.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-11-10-25/rawdata/c58_22_pl_16h20007.mrc"
        > <i class="download icon"></i> Download </a></p>

        c58_22_pl_16h20007_full.rec,  Reconstruction (Pixel Size 0.0 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-11-10-25/3dimage_49540/c58_22_pl_16h20007_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.dyfpds
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Alburnus baliki)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 20 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045932-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/gp00y-y8y73
title: Agro delta_rem 28C liq

description: apr-12-2014, confirmed virb2 by western
description: <strong>Tilt Series Date:</strong> 2014-04-12</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> autoPatch</p>
<strong>Collaborators and Roles:</strong> clay fuqua</p>
<strong>Purification / Growth Conditions / Treatment:</strong> AB media, +acetosyringone ~24 hrs</p>
  etl2014-04-12-10_slicer8117.jpg: Agrobacterium tumefaciens .  vesicle etl2014-04-12-10_slicer8118.jpg: Agrobacterium tumefaciens .  filament
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-04-12-10/rawdata/</p>agro_rem_28liq0010.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-04-12-10/rawdata/agro_rem_28liq0010.mrc"
        > <i class="download icon"></i> Download </a></p>

        agro_rem_28liq0010.rec,  Reconstruction (Pixel Size 1.92 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-04-12-10/3dimage_41389/agro_rem_28liq0010.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/487s2-q2b37
title: HUVECs infx pNLGFP

description: pNLGFP obtained from Irvin Chen (UCLA)
description: <strong>Tilt Series Date:</strong> 2013-10-22</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> HUVECs</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 26000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSFTomo</p>
<strong>Collaborators and Roles:</strong> pNLGFP obtained from Irvin Chen (UCLA)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Whole cells were grown on Au finder grids and infected with pNLGFP- VSVG. Sample frozen 36h post infection</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at ://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-10-22-8/rawdata/</p>C169-2_HUVECs_pNL36h_atlas3_0007.mrc,  Tilt Series (Pixel Size 0.42 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-10-22-8/rawdata/C169-2_HUVECs_pNL36h_atlas3_0007.mrc"
        > <i class="download icon"></i> Download </a></p>

        C169-2_HUVECs_pNL36h_atlas3_0007_part121_2.rec,  Reconstruction (Pixel Size 1.68 nm), 516.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-10-22-8/3dimage_33648/C169-2_HUVECs_pNL36h_atlas3_0007_part121_2.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/v36wz-f1245
title: Agrobacterium tumefaciens A139

description: Bald strain with GFP tagged VirB8
description: <strong>Tilt Series Date:</strong> 2014-01-27</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> cells grown on plate, scraped off and grown o/n in a drop</p>
<strong>Sample Preparation:</strong> Vitrobot manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-01-27-8/rawdata/</p>A139_drop0008.mrc,  Tilt Series (Pixel Size 0.4 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-01-27-8/rawdata/A139_drop0008.mrc"
        > <i class="download icon"></i> Download </a></p>

        A139_drop0008_full.rec,  Reconstruction (Pixel Size 0.0 nm), 623.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-01-27-8/3dimage_49308/A139_drop0008_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.sxytf9
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Poterium sanguisorba",
 "Country is Uzbekistan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045933-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/5szbd-pgp05
title: HUVECs infx pNLGFP

description: Raw data files of HUVECs infx pNLGFP
description: <strong>Tilt Series Date:</strong> 2013-09-12</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Unspecified</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 26000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSFTomo</p>
<strong>Collaborators and Roles:</strong> pNLGFP obtained from Irvin Chen (UCLA)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Whole cells were grown on Au finder grids and infected with pNLGFP- VSVG. Sample frozen 24h post infection</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at ://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-09-12-2/rawdata/</p>13sep11_C167-1_HUVECspnl24hPI_montage27X27_0010.mrc,  Tilt Series (Pixel Size 0.42 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-09-12-2/rawdata/13sep11_C167-1_HUVECspnl24hPI_montage27X27_0010.mrc"
        > <i class="download icon"></i> Download </a></p>

        13sep11_C167-1_HUVECspnl24hPI_montage27X27_0010_full.rec,  Reconstruction (Pixel Size 1.68 nm), 430.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-09-12-2/3dimage_30872/13sep11_C167-1_HUVECspnl24hPI_montage27X27_0010_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/9v7re-dy086
title: COS7 VPS4DN+pNLGFP

description: Cos7 cells transfected with VPS4DN (0.5 ug) and pNLGFP provirus construct (4 ug). Sample #C126
description: <strong>Tilt Series Date:</strong> 2012-04-28</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Cercopithecus aethiops (monkey, African green)</p>
<strong>Strain:</strong> COS-7 ATCC CRL-1651</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> VPS4DN construct provided by Wes Sundquist. pNLGFP construct provided by Irvin Chen, UCLA. Cells transfected, frozen and imaged at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> whole cells grown on grids and transfected with lipofectamine</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-04-28-14/3dimage_68600/</p>12apr28_C126_1_pNLDN_COS7_AT2BT3_0024_full.rec,  Reconstruction (Pixel Size 2.0 nm), 619.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-04-28-14/3dimage_68600/12apr28_C126_1_pNLDN_COS7_AT2BT3_0024_full.rec"
        > <i class="download icon"></i> Download </a></p>

        12apr28_C126_1_pNLDN_COS7_AT2BT3_0024.mrc,  Tilt Series (Pixel Size 0.5 nm), 677.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.cysups
title: Occurrence Download

description: A dataset containing 4717 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Türkiye",
 "OccurrenceStatus is Present",
 "TaxonKey is Quercus"
 ]
}

 The dataset includes 4717 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045934-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/334hx-08t47
title: Ori5 MA

description: Raw data files of Ori5 MA
description: <strong>Tilt Series Date:</strong> 2014-02-12</p>
<strong>Data Taken By:</strong> Songye Chen</p>
<strong>Species / Specimen:</strong> Methylomicrobium alcaliphilum</p>
<strong>Strain:</strong> 20Z-ori5</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -12.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Marina Kalyuzhnaya @ Univ. Washington provided the culture</p>
<strong>Purification / Growth Conditions / Treatment:</strong> P-medium, 3% NaCl, supplemented with 0.2% methylacetate (3rd transfer from methyalcetate plate)</p>
  scy2014-02-12-5_slicer3923.jpg: intra-cytoplasmic membranes
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2014-02-12-5/3dimage_42596/</p>at105_1k.rec,  Reconstruction (Pixel Size 1.92 nm), 226.6 MB  
        
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        atlas10005.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
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