cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11452368.v1
title: ACHPA: A sensor based system for automatic environmental control in hydroponics

description: Abstract The trend towards tunnel farming and hydroponic systems is increasing owing to the climatic changes as well as the need to increase crop yield. Hydroponic is a technique of growing plants without soil. Tunnel farming and hydroponic system requires controlled environmental parameters like temperature, humidity and soil moisture for better production of crops. This paper presents an effective method, named, ACHPA (Automatically Controlled Hydro-Ponic Agriculture) scheme that monitor and controls environmental parameters using sensors and controller. ACHPA provides better environmental control over traditional manual monitoring and controlling, thus yield high-quality crops. Sensor based monitoring and control system regulates the temperature and humidity of the tunnel to yield better. For the sake of saving water, an efficient method of drip irrigation is implemented which delivers water directly to the plants rather than being sprayed on as in conventional farming method. The proposed system here is tested for controlled environment and observations recorded for crop analysis purpose. This makes an effective solution to growing highly efficient, good quality and disease free crop production.
DOI: 10.6084/m9.figshare.12800222.v1
title: Corydalis yanhusuo transcriptome annotation & expression pattern

description: Corydalis yanhusuo transcriptome annotation & expression patterns in leaf (L) and tuber (R) tissues with 3 replicas
DOI: 10.6084/m9.figshare.13177058.v1
title: China material stocks and flows accounts 1978-2018

description: We develop a Provincial Material Stocks and Flows (PMSF) model and present the Provincial Material Stocks and Flows Database (PMSFD) for China and its 31 provinces. This dataset describes material inputs, stocks accumulation, and end-of-life outflows in terms of 13 materials, including steel, aluminium, copper, rubber, plastic, glass, lime, asphalt, sand, gravel, brick, cement, and wood. The spatial scales and timeframes range from sectors, provinces to nation and 1978 to 2018. PMSFD contains 100,000+ data records with consistent system boundaries, data sources, modelling approaches, assumptions on missing data, and product categories. PMSFD offers a comprehensive basis and can be used to accumulate, structure, and enhance in the future. PMSFD facilitates an in-depth understanding of materials use and management, which are one of the key goals of sustainability science.
DOI: 10.6084/m9.figshare.18973025.v1
title: Supplementary Material for: Orientation of the atrial septum to the inferior vena cava may contribute to the persistent patency of the foramen ovale

description: Purpose: There is growing evidence that paradoxical embolism through patent foramen ovale (PFO) is a cause for cryptogenic stroke. However, it is still unclear why the foramen ovale fails to close after birth. We studied whether the 3D relations between the atrial septum and the inferior vena cava (IVC) are associated with PFO. Methods: We recruited 30 patients (18-49 years) with a first-ever cryptogenic stroke and 30 age- and sex-matched stroke-free controls. Using cardiac magnetic resonance (CMR), an approach to evaluate the 3D relations between the atrial septum and the IVC was developed. The presence of interatrial right-to-left shunt was evaluated with transesophageal echocardiography (TEE) in patients and transcranial Doppler in controls. Results: Of 30 patients, 29 underwent successful TEE, of which 12 (41%) had a shunt. Patients with a shunt had a greater mean 3D angle (γ) between the atrial septal plane and the vector from the orifice of the IVC to the middle of the atrial septum compared with patients without a shunt (45±9° vs. 36±8°, p=0.017). Of 30 controls, 12 (40%) had a shunt and a greater mean γ compared with controls without a shunt (47±8° vs. 37±10°, p=0.007). In a pooled analysis, 24 (41%) of 59 subjects with a shunt had a mean γ of 46±9° compared with subjects without a shunt of 37±9° (p&lt;0.001). Conclusions: More perpendicular orientation of the atrial septal plane to the orifice of the IVC is associated with PFO, possibly by directing the IVC flow to PFO.
DOI: 10.6084/m9.figshare.20553984.v1
title: Supplementary Material for: Mortality, Causes of Death, and Predictors of Death among Patients On and Off Opioid Agonist Treatment: Results from a 19-Year Cohort Study

description: <b><i>Background:</i></b> Mortality is increased among people with opioid use disorder but reduced while on opioid agonist treatment (OAT). However, the impact of patient and treatment characteristics on mortality and causes of death is insufficiently studied. <b><i>Objectives:</i></b> The objective of this study was to explore mortality and causes of death and examine the impact of patient and treatment characteristics on mortality in an OAT cohort with high retention in treatment. <b><i>Methods:</i></b> <i>Design</i>: longitudinal cohort study. <i>Setting</i>: Norway. <i>Observation period</i>: time from OAT start as of 1998 until death or end of 2016, 2,508 person-years (PY) in total. <i>Sample</i>: 200 persons starting OAT 1998–2007. <i>Data sources</i>: hospital records, interviews, the Norwegian Cause of Death Registry, Statistics Norway. <b><i>Results:</i></b> Retention: 86.4% of the observation period was on OAT, 9.0% off, 4.6% unknown OAT status. All-cause crude mortality rate per 100 PY during the whole observation period was 1.64 (95% CI: 1.19–2.20), for deaths of somatic cause 0.88 (0.56–1.31), for drug-induced deaths 0.44 (0.23–0.76), and traumatic deaths 0.24 (0.10–0.50). Off-versus-on-OAT all-cause mortality ratio was 2.31 (1.00–4.85). On OAT, 58% of the deaths were of somatic cause and 21% drug-induced; off OAT, 38% of somatic cause and 50% drug-induced. Increasing baseline age and rate of somatic hospital treatment episodes were independently associated with <i>increased</i> all-cause mortality risk, while increasing rate of in-patient psychiatric treatment episodes was associated with <i>reduced</i> risk. Increasing duration of nicotine and cannabis use and alcohol dependence as well as increasing severity of polydrug use were associated with increased all-cause and somatic mortality adjusted for age and sex. <b><i>Conclusion:</i></b> The long observation period made it possible to demonstrate the importance of long-term retention in OAT to reduce mortality. Further, the preponderance of somatic and reduction of drug-induced causes of death during OAT underlines the need for follow-up of chronic diseases and health-promoting lifestyle changes. These findings add to the knowledge about long-term OAT effects, not least in ageing OAT populations.
DOI: 10.6084/m9.figshare.7837931.v1
title: Supplementary Material 2 The sequences of the 84 new transcripts

description: The sequences of the 84 new transcripts.
DOI: 10.6084/m9.figshare.10007330.v2
title: patients-MEFV-20180510.xlsx

description: MEFV muations in sJIA patients
DOI: 10.6084/m9.figshare.20222163.v1
title: Supplementary Material for: Considerations for Conducting Bring Your Own “Device” (BYOD) Clinical Studies

description: <b><i>Background:</i></b> Digital health technologies are attracting attention as novel tools for data collection in clinical research. They present alternative methods compared to in-clinic data collection, which often yields snapshots of the participants’ physiology, behavior, and function that may be prone to biases and artifacts, e.g., white coat hypertension, and not representative of the data in free-living conditions. Modern digital health technologies equipped with multi-modal sensors combine different data streams to derive comprehensive endpoints that are important to study participants and are clinically meaningful. Used for data collection in clinical trials, they can be deployed as provisioned products where technology is given at study start or in a bring your own “device” (BYOD) manner where participants use their technologies to generate study data. <b><i>Summary:</i></b> The BYOD option has the potential to be more user-friendly, allowing participants to use technologies that they are familiar with, ensuring better participant compliance, and potentially reducing the bias that comes with introducing new technologies. However, this approach presents different technical, operational, regulatory, and ethical challenges to study teams. For example, BYOD data can be more heterogeneous, and recruiting historically underrepresented populations with limited access to technology and the internet can be challenging. Despite the rapid increase in digital health technologies for clinical and healthcare research, BYOD use in clinical trials is limited, and regulatory guidance is still evolving. <b><i>Key Messages:</i></b> We offer considerations for academic researchers, drug developers, and patient advocacy organizations on the design and deployment of BYOD models in clinical research. These considerations address: (1) early identification and engagement with internal and external stakeholders; (2) study design including informed consent and recruitment strategies; (3) outcome, endpoint, and technology selection; (4) data management including compliance and data monitoring; (5) statistical considerations to meet regulatory requirements. We believe that this article acts as a primer, providing insights into study design and operational requirements to ensure the successful implementation of BYOD clinical studies.
DOI: 10.6084/m9.figshare.3525767.v1
title: Appendix E. A figure illustrating the increased effect of forest composition in years with more extreme fire weather.

description: A figure illustrating the increased effect of forest composition in years with more extreme fire weather.
DOI: 10.6084/m9.figshare.4914902.v1
title: Dataset for Blackwell et al. 2017

description: Analysis dataset in comma-delimited text format (.csv file extension). This dataset accompanies the manuscript submitted in 2017 to PLOS ONE for publication:<br> Blackwell, S.B., C.S. Nations, M.E. Kauffman, A.M. Thode, A.S. Conrad, R.G. Norman, and K.H. Kim. Effects of tones associated with drilling activities on bowhead whale calling rates.<br>There are six fields in the dataset: DASAR, Site, DateTime, Calls, Airguns, and Tones.<br>
DOI: 10.17632/3tt6m5nhhj
title: A transmissibility-based procedure to estimate the modal properties of an on-board Tuned Mass Damper

description: These files contain the dataset and code (Matlab) used to develop the work described in the article named "A transmissibility-based procedure to estimate the modal properties of an on-board Tuned Mass Damper". Some tests have been carried out to support the theoretical background presented in that article, and they are shown here. The aim of the article is to present a procedure based on transmissibility (acceleration) recordings to estimate the properties of a TMD once it is installed on the structure. The recordings of the tests carried out to validate the methodology are included in this dataset together with the code files containing the whole methodology described in the article, finishing by providing an estimation of the TMD properties. More information can be found in the published paper: https://doi.org/10.1016/j.ymssp.2019.106378
DOI: 10.17632/kpnzpm6vd8
title: LINF_150023800

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/ss9yfdmk87
title: The data used for the manuscript prepared under the name of "Deep neural networks for estimating S-wave velocity in tight sandstone reservoirs from log data" are lised here.

description: The data correspond to five wells of tight-gas sandstone reservoirs (named wells 1-5) and three wells of tight-oil sandstone reservoirs (named wells A-C).
DOI: 10.6084/m9.figshare.23896632.v1
title: MLZilla_Case_Data.csv

description: This dataset consist of credit risk analysis data which could be used for both, analysis and prediction.
DOI: 10.17632/88rtjf79hg
title: Aflatoxin M1 in Raw Milk, Pasteurized Milk and Cottage Cheese Collected along Value Chain Actors from Three  Regions of Ethiopia

description: ELISA RAW DATA SET for AFM1 in Milk and Cottage Cheese Collected along Value Chain Actors from Three  Regions of Ethiopia
DOI: 10.17632/t3rmh8hgzk
title: Mental Health and Capitalism 

description: This article is a brief and yet sufficient introduction to the subject of Mental Health and Capitalism. It's main goal is to find out the source of our mental illnesses, whether it's caused by our socioeconomic system or it's caused by a simple biological misfunction. I talk about the housing situation under capitalism, the inequality under capitalism, the workplaces under capitalism and last but not least I talk about politicizing mental illness.
DOI: 10.17632/ynwykbwcrj
title: Data for: Syncollisional Gabbro in the Irtysh Shear Zone, Eastern Kazakhstan: Compositions, Geochronology, and Geodynamic Implications

description: Petrographical, mineralogical, geochemical, and geochronological studies reveal three mineralogically and chemically different types of gabbro intrusions in the Irtysh shear zone in Eastern Kazakhstan: (1) gabbrodolerite and dolerite, (2) enriched biotite-bearing gabbro, and (3) layered peridotite-gabbro (largest intrusion). The rocks formed by fractional crystallization from two types of parent magmas, with their compositions (a) similar to tholeiitic subalkaline basalt (gabbro of types 1 and 2) and (b) intermediate between tholeiitic and calc-alkaline series being relatively depleted and more magnesian (type 3 gabbro). Geochemical and isotopic data indicate a sublithospheric subduction-related mantle source for the two types of primary magmas, which were produced, respectively, by low- and high-degree partial melting of depleted mantle material (spinel lherzolite). The obtained U-Pb and Ar-Ar ages of the gabbro samples (317-313 Ma) fall within the time of a collisional orogenic event. As predicted by geodynamic models, ascending mafic melts from a mantle wedge may intrude through windows in the sublithospheric mantle in the presence of slab discontinuity at the transform boundary of colliding plates along the Irtysh shear zone.
DOI: 10.6084/m9.figshare.11889015.v3
title: Data File 2_Candidatus Afipia apatlaquensis.OGRI.pdf

description: <b>Overall genome relatedness index for “<i>Candidatus</i> Afipia apatlaquensis” sp. nov., strain IBT-C3 with close phylogenetic neighbors</b>
DOI: 10.17632/xcs7y2wcph
title: Example dataset for SoundTrap array

description: A sample dataset of a 3-element SoundTrap array, as recorded on the bench is available here. This is supplementary research data to accompany the following article: Malinka CE, Atkins J, Johnson MP, Tonnesen PH, Dunn CA, Claridge DE, Aguilar de Soto N, Madsen PT. "An autonomous hydrophone array to study the acoustic ecology of deep-water toothed whales." Deep Sea Research I. https://doi.org/10.​1016/​j.​dsr.​2020.​103233 This data is included to allow for testing of the MATLAB library (github.com/cemalinka/SoundTrapArray) for the time synchronisation of all channels on the SoundTrap array. 1678024710 is the transmitter, and the other two SoundTraps are receivers. Upon using this software and data, taps of both receivers against the transmitter at the end of the ~2.5 h long deployment will be accurately time-aligned in the resulting multi-channel WAV files.
DOI: 10.6084/m9.figshare.7710389.v2
title: cosmic_ccle

description: cell linebioinformatics
DOI: 10.6084/m9.figshare.13489629.v1
title: Inter-spike intervals of Purkinje Cells

description: Inter-spike times for synthetically generated neural dynamics of Purkinje Cells when a current of I=0.1, 0.5, 0.7, 1, 2, 2.5, 3, 3.3, 3.5 nA was injected in the soma. Data was generated using a multi-compartmental model developed by Miyasho et at, 2001.<br><br>This data was used to inferred phenomenological models of Purkinje Cells in C. Rivera, D. Hofmann, I. Nemenman, submitted 2020<br>Names in data:SpikeTimes: Inter-spike times UTimes: unique times of SpikeTimesnf: Frequencies corresponding of unique timesDt= 0.025 ms time resolution
DOI: 10.6084/m9.figshare.15145020.v1
title: Raw Measurements

description: Raw measurements
DOI: 10.6084/m9.figshare.3505856.v1
title: Reinforced Go/No-go task

description: Reinforced go/no-task adapted from Crockett et al. (2009) J. Neuroscience, 29 (38). Calls functions: 'KeyPressFunction' & 'randCheckerboard'. Requires the .txt instruction files to be put in a folder 'Instructions', four images (two happy/fearful faces) in .bmp format in a folder named 'CrockettStim' and .csv trial files in a folder named 'Trials'. Alternatively, change the code calling the instructions, images and trials in the CrockettExp.m script.
DOI: 10.6084/m9.figshare.14170952.v1
title: data - Canuel et al. - Costs of Biomass Procurement

description: We studied forest harvest operations for biomass in the form of trees and tree sections, along with wood for sawtimber and pulp, by evaluating and comparing harvest costs and quantifying the relationship between stand characteristics, harvest costs and harvested volume. We tested four increasing clearcut intensities (from harvesting sawtimber only to harvesting sawtimber, pulpwood and a maximum of biomass) within three sites in eastern Canada.<br>
DOI: 10.6084/m9.figshare.5548594.v2
title: Capacitated Competitive Facility Location Problem

description: Data set for Capacitated Competitive Facility Location Problem including seven problem instances with different sizes
DOI: 10.6084/m9.figshare.23993748.v4
title: A Dynamic Social Network of Characters Appeared in the French Novel "Les Liaisons Dangereuses"

description: Social networks for fictional characters offer valuable insights for quantitatively examining narrative elements. These networks highlight the importance, roles, and groupings of characters. This dataset showcases a social network of characters from the epistolary French novel, "Les Liaisons Dangereuses," penned by Pierre Choderlos de Laclos in 1782. The relationships between characters are gauged by the frequency of letter exchanges, resulting in an asymmetric, directed graph representation. While static social networks provide significant insights into literature, monitoring the dynamic shifts in character relationships can elucidate plot developments, such as rising tensions or emerging conflicts. Consequently, we've mapped the dynamic social network of these characters across four intervals corresponding to the novel's four chapters. Each interval captures interaction rates from the novel's outset to the conclusion of that specific chapter. Comparing these four intervals reveals the evolving dynamics of character relationships throughout the narrative.
DOI: 10.6084/m9.figshare.28750601.v1
title: Easily Parallelising Python Across Nodes Using MPI

description: One of the key benefits of large-scale cluster computing is the ability to run massively parallelised computing tasks for orders of magnitude gains in completion times. Yet, custom scripts often cannot suitably exploit multi-core/multi-node clusters. While interpreted languages, such as python, can readily support parallelisation across multiple CPU cores, parallelisation across cluster nodes is typically more complex and implemented in lower level languages such as C. <br>The ubiquity of Python in life science research presents the opportunity for large improvements in compute times, should parallelisation techniques be deployed by researchers. This is a brief introduction to the mpi4py library and a novel tool that exemplifies strategic use of mpi4py to straightforwardly parallelise custom python scripts not only across multiple cores but simultaneously across multiple nodes at OSC.
DOI: 10.17632/hms3sjzt7f
title: AneRBC dataset: a benchmark dataset for computer-aided anemia diagnosis using RBC images. https://doi.org/10.1093/database/baae120

description: cite as: 
Muhammad Shahzad, Syed Hamad Shirazi, Muhammad Yaqoob, Zakir Khan, Assad Rasheed, Israr Ahmed Sheikh, Asad Hayat, Huiyu Zhou, AneRBC dataset: a benchmark dataset for computer-aided anemia diagnosis using RBC images, Database, Volume 2024, 2024, baae120, https://doi.org/10.1093/database/baae120
DOI: 10.6084/m9.figshare.14216162.v1
title: Dataset HIV Clinic Screening tool pilot study

description: Dataset containing the 40 initial items of a new patient-reported measure developed by the team: The HIV Clinic Screening Tool (CST-HIV). The dataset also includes several brief validated tools to assess the CST-HIV criterion validity. This dataset was used to analyze the psychometric propierties and preliminary evidence of construct and criterion validity of the
DOI: 10.6084/m9.figshare.23768061.v2
title: Four years of climate warming reduced dark carbon fixation in coastal wetlands

description: Supplementary Datasets
DOI: 10.6084/m9.figshare.24081966.v1
title: rawdata.vcf.gz

description: VCF with unfiltered SNPs. Distinct list of SNPs can be used to generate datasets used in the manuscript.
DOI: 10.6084/m9.figshare.27175326.v1
title: Molecules 2024 - In-situ raman microscopy

description: DSC data in TXT, IRM data as raw group files from OMNIC software
DOI: 10.6084/m9.figshare.25689237.v1
title: Per-gene model summaries (9-species analysis) from Bacterial sepsis triggers stronger transcriptomic immune responses in larger primates

description: Interspecific betas for allometry model estimates and credible intervals for each individual gene tested. Identified by ENSEMBL and HGNC names, with Deschamps et al. immune function annotations.
DOI: 10.6084/m9.figshare.28328417.v1
title: Table 3 Experimental parameters and weld seam geometry.xlsx

description: Experimental parameters and weld seam geometry
DOI: 10.6084/m9.figshare.28525877.v1
title: Objective Structured Teaching Encounter (OSTE) implementation feedback survey responses

description: This project highlights the successful implementation of OSTE in Georgian medical education and its impact on faculty development and teaching quality. The project involved establishing OSTE stations at the Clinical Skills Training Center of the Higher Medical Institute and conducting training of trainers (ToT) exercises led by international experts. Standardized scripts and rubrics were developed to objectively evaluate teaching effectiveness, and this approach was later expanded to other universities in Georgia. A survey was conducted after each workshop to collect feedback from participants.
DOI: 10.17035/cardiff.27691971.v1
title: Impact of water availability on <i>Plantago lanceolata </i>and <i>Tanacetum parthenium</i>: Data

description: Dataset from a manipulative/glasshouse experiment to examine the effects of water availability on growth, performance and metabolite production of two common plant species in the UK (<i>Plantago lanceolata</i> and <i>Tanacetum parthenium</i>)
DOI: 10.17605/osf.io/hsyrj
title: Smart Farming Durian Data
DOI: 10.17632/bbtfbhsp3t
title: DLD Andalucía

description: Los archivos de este dataset permiten la reproducción íntegra de la investigación realizada. Desempleo de Larga Duración en Andalucía 2015 a 2023. Cálculos propios a partir de registros del Instituto de Estadística y Cartografía de Andalucía (IECA) y Observatorio ARGOS (Servicio Andaluz de Empleo, Junta de Andalucía). Imágenes y producción realizados con Geoda. No se incluye la matriz de pesos espaciales.
DOI: 10.6084/m9.figshare.19776004.v1
title: EEG Dataset for RSVP and P300 Speller Brain-Computer Interfaces

description: BIDS-EEG format for the entire dataset
DOI: 10.6084/m9.figshare.20553603.v1
title: Supplemetal Table S1.pdf

description: <em>Treatment b</em>y<em> week interaction for dry matter intake in Holstein </em>cows fed TMR supplemented with 0 (Control) 0.3 mg/kg of Se from selenium yeast (SY-0.3), 0.1 or 0.3 mg/kg from hydroxy-selenomethionine (OH-SeMet-0.1 or OH-SeMet-0.3) during twelve weeks.
DOI: 10.17632/4sxbcz2wnn
title: A Direct Statistic Mapping Approach for Multiple Driving Force Analysis of Urban Water Quality under Multi-Time Scales

description: The data aims to reproduce results in a manuscript.