cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6292058.v1
title: Data directory for NSPN manuscript "Adolescence is associated with genomically patterned consolidation of the hubs of the human brain connectome".

description: This zipped directory contains all the data required to reproduce the analyses in "Adolescence is associated with genomically patterned consolidation of the hubs of the human brain connectome".<br><br>
DOI: 10.6084/m9.figshare.20238807.v1
title: Dynamic changes in community structure and degradation performance of a lignocellulolytic bacterial consortium MMBC-1 during the subculturing revival

description: The 16S rRNA gene sequences dataset of MMBC-1 during the subculturing revival.
DOI: 10.6084/m9.figshare.28485476.v1
title: Data_Biarticular gastrocnemii muscles increase their joint energy transfer potential at high running speeds

description: Data belonging to the paper "Biarticular gastrocnemii muscles increase their joint energy transfer potential at high running speeds" published in the journal Royal Society Open Science 2025.
DOI: 10.6084/m9.figshare.5924077.v1
title: Data references from Reproducible big data science: A case study in continuous FAIRness

description: We provide here archival references to the Minids (https://github.com/ini-bdds/minid) listed in Tables 2 and 3 of the paper, "Reproducible big data science: A case study in continuous FAIRness." These references are organized as a BDBag and thus can be manipulated with the bdbag tools at https://github.com/ini-bdds/bdbag.
DOI: 10.6084/m9.figshare.28839068.v2
title: Multimodal-Sentiment-Analysis-main.zip

description: Multimodal-Sentiment-Analysis-main
DOI: 10.6084/m9.figshare.19729576.v1
title: Data

description: The Data and Features for the random forest classifier at https://github.com/dilangaem/semiconAI. The related paper is published at https://doi.org/10.26434/chemrxiv-2022-0gz3p.
DOI: 10.6084/m9.figshare.27933807.v1
title: MetaHIT "error-free" contigs from MetaBAT

description: We obtained this data from MetaHIT "error-free" contigs produced in Metabat [1]. The dataset was derived from raw read obtained obtained through 264 human gut sequencing runs conducted by the MetaHIT consortium [2]. The reads were mapped to 290 known genomes from the NCBI-database.To create the contigs, the reference genomes were shredded, resulting in 41 to 1617 contigs per genome. These contigs had 31 overlapping bases and lengths spanning 2.5K to 64.5K base pairs. The contigs are considered "error-free" as they were obtained directly from known genomes rather than being constructed fromby an assembly algorithm. We filtered contigs below 2.5k basepairs, resulting in a total of 177.146 contigs.See more in Metabat: https://bitbucket.org/berkeleylab/metabat/wiki/Home. <br>[1] Kang, Dongwan D., et al. "MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities." <i>PeerJ</i> 3 (2015): e1165.[2] Ehrlich, S. Dusko, and MetaHIT Consortium. "MetaHIT: The European Union Project on metagenomics of the human intestinal tract." <i>Metagenomics of the human body</i> (2011): 307-316.
DOI: 10.6084/m9.figshare.29037608.v1
title: <b>Unraveling the Proto-South China Sea Plate</b><b> in the Mantle</b><b>: N</b><b>ew</b><b> Insights from Seismic Tomography</b>

description: The file is the dataset for the manuscript entitled '<b>Unraveling the Proto-South China Sea Plate</b><b> in the Mantle</b><b>: N</b><b>ew</b><b> Insights from Seismic Tomography</b>' by Gou et al., including the P-wave local and teleseismic travel-time data and the information of seismic stations.
DOI: 10.6084/m9.figshare.11807097.v1
title: Data associated with 'Food web properties vary with climate and land use in South African streams'

description: Raw_iso = Carbon and Nitrogen stable isotope ratios for animals in 21 streams across South Africa, sample in 2014/2015.<br>final_binary = presence/absence data of animals in 29 streams in South Africa <br>site_info = site details for above data.
DOI: 10.6084/m9.figshare.28525724.v1
title: Supplementary Tables

description: Background: Periodontitis is a prevalent multifactorial, oral infectious disease and is considered a high-risk factor for pancreatic cancer. Nevertheless, there is limited understanding of the underlying epigenetic mechanisms governing this relationship. The aim of this study was to identify dysregulated miRNAs associated with periodontitis and pancreatic cancer, along with their related genes, signaling pathways, and compounds. Material and Methods: miRNA expression datasets for tissues affected by periodontitis and pancreatic cancer were obtained from the Gene Expression Omnibus database. Differentially expressed miRNAs relative to the normal tissues were detected, and differentially expressed miRNAs common to both datasets were determined. Further bioinformatics approaches were used to explore the association of common differentially expressed miRNAs with periodontitis and pancreatic cancer. Results: Twenty shared, differentially expressed miRNAs were identified; 14 exhibited similar expression patterns in both diseases. Among these common differentially expressed miRNAs,10 were found to be overexpressed. Hsa-miR-155, hsa-miR-186, hsa-miR-765, hsa-miR-211 and hsa-miR-375were the top miRNA nodes in the gene network, with hsa-mir-155being the sole miRNA node in the transcription factor network. Top candidate miRNA-dysregulated genes included Superoxide Dismutase 2 (SOD2), Nuclear FMR1 Interacting Protein 2 (NUFIP2), SFT2 Domain Containing 2 (SFT2D2), Thioredoxin Interacting Protein (TXNIP), and Cyclin D1 (CCND1), while top dysregulated transcription factors were Argonaute RISC Catalytic Component 2 (AGO2), AKT Serine/Threonine Kinase 1 (AKT1), B-Cell Lymphoma 6 (BCL6), Breakpoint Cluster Region (BCR), and BRCA1 DNA Repair Associated (BRCA1). Relevant compounds for targeting these emerged, including 5-fluorouracil, gemcitabine, doxorubicin, ascorbate, diethylstilbestrol, and temozolomide. Conclusion: Our study suggests candidate molecular mechanisms linking periodontitis to pancreatic cancer, highlighting potential compounds that may target both diseases. These findings provide a foundation for guiding future fundamental and clinical research.
DOI: 10.6084/m9.figshare.22626679.v1
title: Allopolyploid expression models

description: Provided are COPASI model files describing gene expression models for allopolyploid hybrids and their diploid progenitors. The included perl scripts sample these models in a range of the parameter space and produce files showing the expression bias observed in the hybrid.
DOI: 10.6084/m9.figshare.20291853.v1
title: Linker clinical case video on Myocardial infarction for integrated teaching module in the first professional phase of competency-based undergraduate medical curriculum.

description: A linker clinical case video on Myocardial infarction was developed and validated for a module in an aligned and integrated curriculum in the first professional phase of the competency-based undergraduate medical curriculum. The video used was developed by and is a copyrighted material of Manipal MedAce. This video is used with permission and may not be used or reproduced without the permission of the copyright owner. Please download the entire file and play the story.html file.
DOI: 10.6084/m9.figshare.21714266.v1
title: Traditional medicines, salt intake and the long-term behavior of the cardiovascular system: understanding arterial hypertension, fibromyalgia, chronic fatigue and many autoimmune and long COVID cases - Supplementary material (excel files)

description: These three spreadsheet (Excel) files provide all mathematical formulas and calculations concerning the model and the two simulations included in the article. Thus, the first one describes the characteristics of the model and shows how it can be solved and the other two explain in detail the simulations whose results are presented in Table 1 - Major functional hemodynamic systemic disorders simulation and Table 2 - Damp preHTA and HTA simulation.
DOI: 10.6084/m9.figshare.6661862.v2
title: Measured data of disturbances of reaction wheels

description: This dataset includes the measured data of reaction wheels:The two word documents named ‘Disturbances of reaction wheels over 0~500Hz’ and ‘Disturbances of reaction wheels over 35~300Hz’ summarize the waterfall plots of measured disturbing forces and torques of each reaction wheel together to give a more direct comprehension on the differences between the disturbances of different reaction wheels. The measured data are shown at 0~500Hz and 35~300Hz separately since the disturbances caused by radial rocking (&gt;350Hz), radial translation (&gt;350Hz) and the basic harmonic (&lt;33Hz) of the reaction wheels are so large that they cover the details of harmonics over 50~300Hz.
DOI: 10.6084/m9.figshare.4287263.v1
title: Discover DH: Introduction to Digital Humanities Theories and Methods

description: Florida State University Libraries presents an introductory workshop series in the Digital Humanities. These sessions are designed to teach students and faculty the basic theories and methods behind digital research in the humanities. The courses cover a broad range of topics, from larger issues in digital research in the academy to specific tools and research techniques. The weeks will be divided into “yack” sessions and “hack” sessions. The yack sessions will begin with a short presentation on an issue facing humanities scholars in the digital world. These will be followed by a discussion by all participants. For the hack sessions, we will begin learning a specific tool for humanities research. These sessions are hands-on and often require specific tools to be set up in advance.
DOI: 10.6084/m9.figshare.7358432.v1
title: Supplementary Material for: Evaluation of D<sub>1</sub>/D<sub>5</sub> Partial Agonist PF-06412562 in Parkinson’s Disease following Oral Administration

description: <b><i>Background:</i></b> PF-06412562 is a moderately potent, highly selective oral D<sub>1</sub>/D<sub>5</sub> dopamine receptor partial agonist. <b><i>Objective:</i></b> To study the efficacy and safety of a single, oral, split dose of PF-06412562 in patients with Parkinson’s disease. <b><i>Methods:</i></b> Following overnight levodopa (L-dopa, Sinemet®) washout, subjects received a single dose of levodopa in open-label period 1. Periods 2 and 3 had a double-blinded, sponsor-open, randomized, 2-way cross-over, placebo-controlled design, during which subjects were randomized to PF-06412562 30 mg (+ 20 mg 4 h later) or placebo. Maximum percent improvement from baseline in finger-tapping speed (measure of bradykinesia) measured using Kinesia<sup>TM</sup> technology (as the primary end point) and change from baseline in the Movement Disorder Society’s Unified Parkinson’s Disease Rating Scale Part III (MDS-UPDRS-III) motor section scores (the preferred exploratory end point) were evaluated. <b><i>Results:</i></b> Nineteen subjects received levodopa; 13 met the period 2/3 entry criteria and received PF-06412562, 30 + 20 mg, or placebo. The prespecified primary efficacy criterion for significant improvement in finger-tapping was not met due to inconsistencies in the task leading to large between-period fluctuations of within-patient baseline values. Change from baseline in MDS-UPDRS-III score with PF-06412562 resulted in a placebo-adjusted point estimate of –10.59 with a one-sided 90% upper CI of PF-06412562 versus placebo model-based contrast of (–inf, –7.44) at 1.5–2.5 h after the dose (<i>p</i> &lt; 0.0001). All adverse events were mild-to-moderate. <b><i>Conclusions:</i></b> We report the first evidence of potential anti-parkinsonian efficacy of the oral selective D<sub>1</sub>/D<sub>5</sub> partial agonist PF-06412562 without the significant acute changes in cardiovascular parameters reported with previous D<sub>1</sub> agonists.
DOI: 10.15468/dl.ybwb8y
title: Occurrence Download

description: A dataset containing 3010616099 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3010616099 records from 63091 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013388-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/pghvyp
title: Replication Data for: "Like Two Pis in a Pod: Author Similarity Across Time in the Ancient Greek Corpus"

description: Code and data for reproducing results in "Like Two Pis in a Pod: Author Similarity Across Time in the Ancient Greek Corpus" by Grant Storey, Cultural Analytics 2020. textCounts.zip includes the token counts for all texts that were part of the analysis. All code is included at the top level (see https://github.com/twopis/twopis to download it all at once).
description: Code also available at https://github.com/twopis/twopis.
DOI: 10.7910/dvn/rauihg
title: Replication Data for: Not so Harmless After All: The Fixed-Effects Model

description: This file contains the STATA do-file for the Monte Carlo analysis
description: forthcoming
description: STATA, 14
DOI: 10.7910/dvn/ri9c54
title: A91_4250.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/78438eda-fee8-1abd-ce9d-727413929f7a'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/78438eda-fee8-1abd-ce9d-727413929f7a
DOI: 10.7910/dvn/v46hi2
title: Daily weather data for Ivory (Madagascar) from 2015 to 2017

description: Daily weather data owned or distributed by AfricaRice and available on &lt;a href="http://www.mlaxmel.com/weatherdata/query.php"&gt; http://www.mlaxmel.com/weatherdata/query.php &lt;/a&gt;
DOI: 10.7910/dvn/9stgwe
title: Harvard Dataverse Optional Feature Use Data

description: This dataset contains data, documentation, and code files associated with studies performed on snapshots of the contents of Harvard Dataverse taken on 28 and 29 October 2019.
description: The definitive project data file: final/dataset_data_subset.txt identifies 29,295 datasets in the Harvard Dataverse on and 383,685 files associated with these datasets. This final file is the result of performing manual cleaning processes using Excel, followed by a series of SQLite operations that are documented and executed via a Jupyter notebook.

Do not perform any subsequent analyzes on raw or cleaned data.
DOI: 10.7910/dvn/en03l3
title: Replication data for: HIV Status and Labor Market Participation in South Africa

description: Volume 95, Issue 1
DOI: 10.7910/dvn/m7agwj
title: Replication Data for: "Could Fiction Have an Information History? Statistical Probability and the Rise of the Novel"

description: Datasets to support "Could Fiction Have an Information History? 
Statistical Probability and the Rise of the Novel" by Dallas Liddle in Journal of Cultural Analytics (2019)
DOI: 10.7910/dvn/6l6jhg
title: Replication Code for: "The Gendered Nature of Liquefied Petroleum Gas Stove Adoption and Use in Rural India"

description: &lt;p&gt; &lt;strong&gt; Summary: &lt;/strong&gt;
This code supports the analysis and production of tables, and figures for the manuscript. &lt;/p&gt; 

&lt;p&gt; &lt;strong&gt; Instructions: &lt;/strong&gt;
First, download all codes and place them in the same folder. Then, download all data found in the Data Archive (&lt;a href="https://doi.org/10.7910/DVN/6L6JHG"&gt;https://doi.org/10.7910/DVN/6L6JHG&lt;/a&gt;) and place these in a folder titled "Dataverse_Files" in the same level as the "Code" folder. Then, open "1_GouldUrpelainen_Main_Replication_Code.R". Run the code to produce all tables and figures found in the manuscript. These tables in figures will pop up in the console. &lt;/p&gt; 

&lt;p&gt; 
The main code itself draws on other code files. Therefore, one does not have to run the entire code but rather can run snippets as desired. However, code "1_" contains relevant libraries needed and code "2_" must be run before any other analyses as it creates necessary variables and data subsets. The rest of the codes, labeled descriptively, are as follows: &lt;/p&gt; 

&lt;p&gt; &lt;strong&gt; Contents: &lt;/strong&gt; &lt;/p&gt; 
&lt;p&gt; 1) Main code that draws on the other codes. &lt;/p&gt; 
&lt;p&gt; 2) Creates variables and subsets. &lt;/p&gt; 
&lt;p&gt; 3) Makes descriptive tables. &lt;/p&gt; 
&lt;p&gt; 4) Makes descriptive figures. &lt;/p&gt; 
&lt;p&gt; 5) Makes map. &lt;/p&gt; 
&lt;p&gt; 6) Runs main regressions. &lt;/p&gt; 
&lt;p&gt; 7) Runs supporting regressions. &lt;/p&gt;

&lt;p&gt; &lt;strong&gt; Citation: &lt;/strong&gt;

Gould, Carlos, 2019, Urpelainen, Johannes, 2019, "Replication Code for: "The Gendered Nature of Liquefied Petroleum Gas Stove Adoption and Use in Rural India"", &lt;ahref="https://doi.org/10.7910/DVN/6L6JHG"&gt;https://doi.org/10.7910/DVN/6L6JHG&lt;/a&gt;, Harvard Dataverse, V1
description: R, 3.6.0
DOI: 10.7910/dvn/pamabu
title: Replication Data for: Fake It Til You Make It: A Natural Experiment to Identify European Politicians' Benefit from Twitter Bots

description: Social media giants stand accused of facilitating illegitimate interference with democratic political processes around the world. Part of this problem is malicious bots: automated fake accounts passing as humans. However, we lack a systematic understanding of which politicians benefit most from them. We tackle this question by leveraging a Twitter purge of malicious bots in July 2018 and a new dataset on Twitter activity by all members of national parliaments (MPs) in the EU in 2018. Since users had no influence on how and when Twitter purged millions of bots, it serves as an exogenous intervention to investigate whether some parties or politicians lost more followers. We find drops in follower counts concentrated among radical right politicians, in particular those with strong anti-EU discourse. This is the first set of empirical, causally-identified evidence supporting the idea that the radical right benefits more from malicious bots than other party families.
DOI: 10.7910/dvn/x3yl21
title: Replication Data for: The Relationship between Affective Polarization and Democratic Backsliding: Comparative Evidence

description: Replication Data for "The Relationship between Affective Polarization and Democratic Backsliding: Comparative Evidence (2021)" Democratization.
DOI: 10.7910/dvn/yas0f5
title: Replication data for Access to Guns in the Heat of the Moment: More Restrictive Gun Laws Mitigate the Effect of Temperature on Violence

description: Review of Economics and Statistics: Forthcoming
DOI: 10.7910/dvn/eoq2ly
title: Whale dataset

description: Whale dataset
DOI: 10.7910/dvn/n0pbq9
title: Replication Data for: Incumbency Advantage and Family Success in Local Elections

description: This contains all of the data, code and functions necessary to replicate the findings in "Incumbency Advantage and Family Success in Local Elections".
description: Open 'readMe.txt' for instructions and information about the data.
DOI: 10.7910/dvn/stuq1b
title: Mapas de la Universidad de Oregon
title: Place name translations for University of Oregon campus maps

description: This is a set of translations of the names of places (buildings, street names, bodies of water, etc.) used in the UO interactive map available at https://map.uoregon.edu. It was created by University of Oregon Spanish Heritage Language Program (SHLUO) Spanish 228 students including Karla Díaz-Miranda, Royce Flores, Tito Flores, Gisselle Garay, Edwin Gutierrez, Anthony Hanson, Ricardo Mendoza, Amanda Murphy, Kevin Neri, Roxanne Orta, and Isaias Torres with UO Librarian Bronwen Maxson and SHL Faculty Heather Quarles. Acknowledgments: UO Dreamers Working Group (DWG) Community Engagement Subcommittee for starting the conversation, UO Libraries and SHLUO for supporting faculty in community engagement and student research projects that think outside the box, the Campus GIS and Mapping Program for sharing data that helped get the project started and translating our data into a publishable map.
DOI: 10.7910/dvn/tqian4
title: Replication Data for: Efficacy and safety of boric acid as a preventive treatment against Saprolegnia infection in Nile tilapia (Oreochromis niloticus)

description: Saprolegniosis is a worldwide fungal-like infection affecting freshwater fishes and their eggs. Reports show high mortalities and subsequent economic losses annually from Saprolegnia infections. Most therapeutants against Saprolegnia spp. infections are inefficient and some have negative impact on the environment. In this study, we have investigated the ability of boric acid (BA) to prevent Saprolegniainfection in Nile tilapia (Oreochromis niloticus). BA inhibited radial growth of Saprolegnia hyphae in vitro. Complete in vitro growth inhibition was found at a concentration of ≥0.6 g/L. Inhibitory effects were also observed in vivo when Nile tilapia were experimentally challenged with Saprolegniaspores and followed over 10 days post challenge and under continuous exposure to different BA concentrations. No signs of saprolegniosis were observed in fish treated with BA at concentrations of 0.4 g/L and above. Comet assay revealed that BA has low toxicity in tilapia continuously exposed to concentrations of 0.2–0.6 g/L for 96 h. Additionally, no significant histomorphological changes were observed in BA-treated fish compared to non-treated controls. Alanine Aminotransferase (ALT) and Aspartate Aminotransferase (AST) enzyme levels indicated reduction in systemic tissue damage associated with Saprolegnia infection. This study demonstrates the potential of BA as a prophylactic measure against Saprolegnia infection in tilapia, and we recommend additional studies on environmental impact.
description: GraphPad prism 8
DOI: 10.7910/dvn/trobcf
title: Pigeonpea Productivity and Parameters

description: &lt;p&gt;This data study contains data on pigeonpea and soybean intensification through phosphorous fertilization. It contains data on cropping system, phosphorous level, treatments and variety of pigeonpea, and yields among many others.&lt;/p&gt;
&lt;p&gt;&lt;h4&gt;About the project &lt;/h4&gt;&lt;/p&gt;
&lt;p&gt;&lt;b&gt;Project title: AfricaRISING - Sustainable Intensification of Maize-Legume-Livestock Integrated Farming Systems in East and Southern Africa&lt;/b&gt;&lt;/p&gt;
&lt;p&gt;&lt;b&gt; Project abstract &lt;/b&gt;&lt;/p&gt;
&lt;p&gt; The Malawi project has local theme 'Agro-ecological intensification in Malawi through action research with smallholder farmers' with a lot of emphasis on co-learning with farmers and other stakeholders.The purpose of the Africa RISING Malawi component is to enhance farmer knowledge and support sustainable intensification (SI) pathways for productivity gains in maize-legume diversified systems, that also integrates livestock-related enterprises such as improved fodder for intensified dairy production. The project is setting up a research approach that systematically assesses SI best-bet options that appropriately respond to the needs of resource-poor farmers - particularly female headed households. Building on successful examples of participatory action research and experiences from biophysical research on smallholder farms in Malawi over the past two decades, the research team has begun taping into these products of agricultural research to move towards more sustainable smallholder production systems. We envisage that farm-scale production strategies employed by different farm/farmer typologies will be further distilled through scenario analyses using farming systems simulation modeling approaches. The project works with an alliance of actors (agro-dealers, extension services, NGOs, local government structures, etc) as R4D platforms for the two districts.&lt;/p&gt;
&lt;p&gt;&lt;b&gt;Project website&lt;/b&gt;: &lt;a href="http://africa-rising.net"&gt; http://africa-rising.net&lt;/a&gt;&lt;/p&gt;
&lt;p&gt; &lt;b&gt;Project start date&lt;/b&gt;: 01/01/2012 &lt;/p&gt;
&lt;p&gt;&lt;b&gt; Project end date &lt;/b&gt;: 09/30/2016 &lt;/p&gt;
description: EXCEL, 2016
description: Experimanetal Data