cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6405259
title: I2K2022 GliaMorph: A Tool to Quantify Glia Morphology in 3D

description: Dataset for the I2K2022 Workshop "<strong>GliaMorph: A Tool to Quantify Glia Morphology in 3D</strong>" presented by Elisabeth Kugler, Sara Beqiri, Karim Nizam, Eva-Maria Breitenbach, and Ryan B MacDonald. <strong>Code</strong>. The code used for the analysis is the GliaMorph toolkit (https://github.com/ElisabethKugler/GliaMorph). <strong>Samples</strong>. Experiments performed at UCL conformed to UK Home Office regulations and were performed under Home Office Project Licence PP2133797 held by RM. Maintenance of adult <em>Tg(TP1bglob:VenusPest)<sup>s940</sup></em> zebrafish in the fish facilities was conducted according to previously described husbandry standard protocols at 28°C with a 14:10 hours (h) light:dark cycle. Embryos, obtained from controlled pair- or group-mating, were incubated in E3 buffer with methylene blue and 0.1% PTU applied between 10-24hpf and refreshed at a minimum of every 24h. <strong>Acquisition</strong>. Zeiss LSM 900 with a 40x water-immersion LD C-Apochromat (NA 1.1). Laser lines 488 nm. <strong>Data</strong>. Three example tiffs of Muller Glia in the retina of 3 day old zebrafish. Folder contains data analysed with the GliaMorph toolkit. Data used for training/teaching purposes.
DOI: 10.5281/zenodo.6405258
title: I2K2022 GliaMorph: A Tool to Quantify Glia Morphology in 3D

description: Dataset for the I2K2022 Workshop "<strong>GliaMorph: A Tool to Quantify Glia Morphology in 3D</strong>" presented by Elisabeth Kugler, Sara Beqiri, Karim Nizam, Eva-Maria Breitenbach, and Ryan B MacDonald. <strong>Code</strong>. The code used for the analysis is the GliaMorph toolkit (https://github.com/ElisabethKugler/GliaMorph). <strong>Samples</strong>. Experiments performed at UCL conformed to UK Home Office regulations and were performed under Home Office Project Licence PP2133797 held by RM. Maintenance of adult <em>Tg(TP1bglob:VenusPest)<sup>s940</sup></em> zebrafish in the fish facilities was conducted according to previously described husbandry standard protocols at 28°C with a 14:10 hours (h) light:dark cycle. Embryos, obtained from controlled pair- or group-mating, were incubated in E3 buffer with methylene blue and 0.1% PTU applied between 10-24hpf and refreshed at a minimum of every 24h. <strong>Acquisition</strong>. Zeiss LSM 900 with a 40x water-immersion LD C-Apochromat (NA 1.1). Laser lines 488 nm. <strong>Data</strong>. Three example tiffs of Muller Glia in the retina of 3 day old zebrafish. Folder contains data analysed with the GliaMorph toolkit. Data used for training/teaching purposes.
DOI: 10.34740/kaggle/dsv/3391773
title: AutoXGB
DOI: 10.5281/zenodo.4432939
title: Mining API Interactions to Analyze SoftwareRevisions for the Evolution of Energy Consumption (MSR'2021 Dataset)

description: <strong>Motivation</strong> This repository contains the data-set used as a basis for our MSR'2021 paper <em>Mining API Interactions to Analyze Software Revisions for the Evolution of Energy Consumption</em>. <strong>Description of the dataset</strong> The dataset is stored in a file <em>msr_2021_dataset.csv</em> and contains the following data: id - an individual identifier sampleNr - a number identifying the group this sample relates to name - the name of the library examined className - the class name as an abbreviation method - the name of the executed method duration - duration of method execution durationAdjusted - duration after alignment between method trace and energy profile energyConsumption - computed energy consumption watts - recorded wattage `package-names` - per package uAPI profile uApi - the computed uAPI profile value The files <em>joule_anova_posthoc_result.csv</em> and <em>uAPI_anova_posthoc_result.csv</em> contain the results of the ANOVA and Tukey HSD posthoc analysis to determine accuracy and F1-score of the presented approach. <strong>License</strong> Creative Commons CC-BY
DOI: 10.5281/zenodo.4432938
title: Mining API Interactions to Analyze SoftwareRevisions for the Evolution of Energy Consumption (MSR'2021 Dataset)

description: <strong>Motivation</strong> This repository contains the data-set used as a basis for our MSR'2021 paper <em>Mining API Interactions to Analyze Software Revisions for the Evolution of Energy Consumption</em>. <strong>Description of the dataset</strong> The dataset is stored in a file <em>msr_2021_dataset.csv</em> and contains the following data: id - an individual identifier sampleNr - a number identifying the group this sample relates to name - the name of the library examined className - the class name as an abbreviation method - the name of the executed method duration - duration of method execution durationAdjusted - duration after alignment between method trace and energy profile energyConsumption - computed energy consumption watts - recorded wattage `package-names` - per package uAPI profile uApi - the computed uAPI profile value The files <em>joule_anova_posthoc_result.csv</em> and <em>uAPI_anova_posthoc_result.csv</em> contain the results of the ANOVA and Tukey HSD posthoc analysis to determine accuracy and F1-score of the presented approach. <strong>License</strong> Creative Commons CC-BY
DOI: 10.34740/kaggle/ds/2026269
title: Breast Cancer CT (Fully Preprocessed)
DOI: 10.5519/qd.gt3smxzu
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.34740/kaggle/dsv/3391762
title: Price data of sh50 in 2014
DOI: 10.5281/zenodo.6400611
title: Factors determining distributions of rainforest Drosophila shift from interspecific competition to high temperature with decreasing elevation (original datasets)

description: This repository provides the data for the manuscript "Factors determining distributions of rainforest Drosophila shift from interspecific competition to high temperature with decreasing elevation" We investigated thermal tolerances and interspecific competition as causes of species turnover in the nine most abundant species of <em>Drosophila</em> along elevational gradients in the Australian Wet Tropics. Specifically, we 1) analyzed the distribution patterns of the studies <em>Drosophila</em> species; 2) fitted thermal performance curves; 3) tested the correlation between multiple thermal traits and distribution patterns; 4) fitted the Beverton-Holt model to describe the single-generation intra- and inter-specific competition effect; 5) examined the long-term effect of competition and temperature on the population size of a pair of Drosophila species. More details are provided in the README file.
DOI: 10.5281/zenodo.6400610
title: Factors determining distributions of rainforest Drosophila shift from interspecific competition to high temperature with decreasing elevation (original datasets)

description: This repository provides the data for the manuscript "Factors determining distributions of rainforest Drosophila shift from interspecific competition to high temperature with decreasing elevation" We investigated thermal tolerances and interspecific competition as causes of species turnover in the nine most abundant species of <em>Drosophila</em> along elevational gradients in the Australian Wet Tropics. Specifically, we 1) analyzed the distribution patterns of the studies <em>Drosophila</em> species; 2) fitted thermal performance curves; 3) tested the correlation between multiple thermal traits and distribution patterns; 4) fitted the Beverton-Holt model to describe the single-generation intra- and inter-specific competition effect; 5) examined the long-term effect of competition and temperature on the population size of a pair of Drosophila species. More details are provided in the README file.
DOI: 10.6084/m9.figshare.18319116
title: How do voice-assisted digital maps influence human wayfinding in pedestrian navigation?

description: Voice-assisted digital maps have become mainstream navigation aids for pedestrian navigation. Although these maps are widely studied and applied, it is still unclear how they affect human behavior and spatial knowledge acquisition. In this study, we recruited thirty-three college students to carry out an outdoor wayfinding experiment. We compared the effects of voice-assisted digital maps with those of digital maps without voice instructions and paper maps by using eye tracking, sketch maps, questionnaires and interviews. The results show that, compared to the other map types, voice-assisted digital maps can help users reach their destinations more quickly and pay more attention to moving objects, thereby increasing the comfort levels of participants. However, the efficiency of voice-assisted maps on route memory tasks does not rival that of paper maps. Overall, the use of voice-assisted digital maps saves time but may reduce pedestrians’ spatial knowledge acquisition. The results of this study reveal the influence of voice on pedestrian wayfinding and deepen the scientific understanding of the multimedia navigation mode in shaping human spatial ability.
DOI: 10.6084/m9.figshare.18319116.v1
title: How do voice-assisted digital maps influence human wayfinding in pedestrian navigation?

description: Voice-assisted digital maps have become mainstream navigation aids for pedestrian navigation. Although these maps are widely studied and applied, it is still unclear how they affect human behavior and spatial knowledge acquisition. In this study, we recruited thirty-three college students to carry out an outdoor wayfinding experiment. We compared the effects of voice-assisted digital maps with those of digital maps without voice instructions and paper maps by using eye tracking, sketch maps, questionnaires and interviews. The results show that, compared to the other map types, voice-assisted digital maps can help users reach their destinations more quickly and pay more attention to moving objects, thereby increasing the comfort levels of participants. However, the efficiency of voice-assisted maps on route memory tasks does not rival that of paper maps. Overall, the use of voice-assisted digital maps saves time but may reduce pedestrians’ spatial knowledge acquisition. The results of this study reveal the influence of voice on pedestrian wayfinding and deepen the scientific understanding of the multimedia navigation mode in shaping human spatial ability.
DOI: 10.6084/m9.figshare.18987360
title: Proxemic maps for immersive visualization

description: In human computer interaction, proxemics describes the ways that people use space to interact with other people or objects. We focus on proxemic maps, which are virtual maps in immersive environments that react to proxemic interaction. Proxemic maps take advantage of new opportunities brought about by immersive visualization, where virtual maps can be freely positioned in virtual or physical space and adapt themselves relative to the spatial position of the viewer. We discuss proxemic interactions that alter the content and type of maps, including changing scale, symbolization, type of visualization and geometry. We propose a novel transformation that changes the geometry of maps based on their proximity to users. Users move the map back and forth and the map transitions between ring, horizontal, vertical and cylindrical geometries. The ring geometry surrounds the user and aligns features on the map with features in the real world. We implemented the map transformation in virtual reality and conducted a user study to evaluate it. The results of the user study indicate that participants preferred the ring and horizontal geometries. The ring geometry is useful because it simplifies connecting virtual features on the map with real features in the landscape, while the horizontal geometry provides an overall view of the landscape. We further found that combination of different geometries helped the study participants to overcome the limitations of each geometry.
DOI: 10.6084/m9.figshare.18987360.v1
title: Proxemic maps for immersive visualization

description: In human computer interaction, proxemics describes the ways that people use space to interact with other people or objects. We focus on proxemic maps, which are virtual maps in immersive environments that react to proxemic interaction. Proxemic maps take advantage of new opportunities brought about by immersive visualization, where virtual maps can be freely positioned in virtual or physical space and adapt themselves relative to the spatial position of the viewer. We discuss proxemic interactions that alter the content and type of maps, including changing scale, symbolization, type of visualization and geometry. We propose a novel transformation that changes the geometry of maps based on their proximity to users. Users move the map back and forth and the map transitions between ring, horizontal, vertical and cylindrical geometries. The ring geometry surrounds the user and aligns features on the map with features in the real world. We implemented the map transformation in virtual reality and conducted a user study to evaluate it. The results of the user study indicate that participants preferred the ring and horizontal geometries. The ring geometry is useful because it simplifies connecting virtual features on the map with real features in the landscape, while the horizontal geometry provides an overall view of the landscape. We further found that combination of different geometries helped the study participants to overcome the limitations of each geometry.
DOI: 10.5519/qd.3txk3vzl
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (45 records)
DOI: 10.3886/e120462v1-113941
title: National Neighborhood Data Archive (NaNDA): Socioeconomic Status and Demographic Characteristics of ZIP Code Tabulation Areas, United States, 2008-2017

description: This dataset contains measures of socioeconomic and demographic characteristics by US ZIP code tabulation area (ZCTA) for the years 2008-2017. Example measures include population density; population distribution by race, ethnicity, age, and income; and proportion of population living below the poverty level, receiving public assistance, and female-headed families. The dataset also contains a set of index variables to represent neighborhood disadvantage and affluence.
description: ZCTAs in the United States. Smallest Geographic Unit: ZIP code tabulation area
description: A ZIP code to ZCTA crosswalk must be used to combine this dataset with ZIP code geocoded data. Such a crosswalk is available on the UDS Mapper website at https://udsmapper.org/zip-code-to-zcta-crosswalk/. Sample code for merging the UDS Mapper crosswalk with NaNDA datasets is available on the NaNDA repository at https://www.openicpsr.org/openicpsr/project/120088/.
DOI: 10.5258/soton/d2105
title: Dataset for "Coherent generation of arbitrary first-order Poincar&eacute; sphere beams on a Si chip"

description: This dataset, supports the manuscript entitled "Coherent generation of arbitrary first-order Poincaré sphere beams on a Si chip", which has a DOI of 10.1364/OE.438695. The dataset contains all the numerical data in the manuscript.
DOI: 10.5519/qd.81oh1r7w
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (45 records)
DOI: 10.6084/m9.figshare.19493897
title: data.zip

description: Relevant data of the article
DOI: 10.6084/m9.figshare.19493897.v1
title: data.zip

description: Relevant data of the article
DOI: 10.5281/zenodo.6405362
title: Dataset of the soil CO2 collected at Vulcano in 2021

description: Dataset of the soil gas survey performed at Vulcano in 2021. The CO2 flux was measured in agreement with the "Dynamic Concentration" Method (Gurrieri and Valenza, 1988: Camarda et al., 2006). The δ<sup>13</sup>C-CO<sub>2</sub> values were against V-PDB international standard (<sup>13</sup>C/<sup>12</sup>C = 0.0111802). Figure shows the Island of Vulcano (Aeolian Island, Italy) and its location in the Mediterranean.
DOI: 10.5281/zenodo.5749736
title: Data supporting: "Trends in Europe storm surge extremes match the rate of sea-level rise"

description: <strong>Data supporting the paper:</strong> <strong>Calafat, F. M., T. Wahl, M. G. Tadesse, & S. Sparrow. Trends in Europe storm surge extremes match the rate of sea-level rise. <em>Nature</em> 603, 841-845.</strong> Please cite the paper above when using this data set. <em>Data description:</em> <strong>Bayesian_solutions_historical_total.nc</strong>: Bayesian estimates (posterior draws) of the GEV parameters, including trends in the GEV location parameter, at both tide gauge sites and prediction locations. This file also contains the observed surge annual maxima from tide gauge records on which these estimates are conditioned. <strong>Bayesian_solutions_historical_contributions.nc</strong>: Bayesian estimates (posterior draws) of the contributions from external forcing and internal climate variability to the trends in the GEV location parameter. <strong>Surge_annual_max_ensemble.nc</strong>: ensemble of surge annual maxima used to extract the pattern of response to external forcing.
DOI: 10.5281/zenodo.5749735
title: Data supporting: "Trends in Europe storm surge extremes match the rate of sea-level rise"

description: <strong>Data supporting the paper:</strong> <strong>Calafat, F. M., T. Wahl, M. G. Tadesse, & S. Sparrow. Trends in Europe storm surge extremes match the rate of sea-level rise. <em>Nature</em> 603, 841-845.</strong> Please cite the paper above when using this data set. <em>Data description:</em> <strong>Bayesian_solutions_historical_total.nc</strong>: Bayesian estimates (posterior draws) of the GEV parameters, including trends in the GEV location parameter, at both tide gauge sites and prediction locations. This file also contains the observed surge annual maxima from tide gauge records on which these estimates are conditioned. <strong>Bayesian_solutions_historical_contributions.nc</strong>: Bayesian estimates (posterior draws) of the contributions from external forcing and internal climate variability to the trends in the GEV location parameter. <strong>Surge_annual_max_ensemble.nc</strong>: ensemble of surge annual maxima used to extract the pattern of response to external forcing.
DOI: 10.5281/zenodo.6397473
title: Laboratory-measured and X-ray CT-derived volumetric composition of a permafrost core

description: This dataset contains data on the volumetric composition of a permafrost core which has been drilled in a Yedoma upland in northeast Siberia (72.36613 N, 126.27272 E) in September 2017. This dataset supplements a research article to be submitted to the scientific journal <em>The Cryosphere</em>. It contains the following files: <strong><em>volumetric_contents_sampleRes_lab+CT.csv</em> </strong><br> Contains the volumetric contents of total ice, organic, and mineral measured in the laboratory at AWI Potsdam at a coarse resolution. It further contains the volumetric contents of gas, excess ice, and two sediment phases (A,B) derived from a CT scan at UFZ Halle, downsampled to the resolution of the laboratory samples. <em><strong>volumetric_contents_highRes_CT.csv</strong></em><br> Contains the volumetric contents of gas, excess ice, and two sediment phases (A,B) derived from a CT scan at UFZ Halle at the original resolution of 50µm. <em><strong>regression analysis_paper.py</strong></em><br> This pyhton script uses the above listed input files to perform and evaluate a regression analysis<strong><em> </em></strong>of the CT data against the laboratory data. The regression result is the composition of the CT-derived sediment phases (A,B) in terms of pore ice, organic, and mineral. The script furthermore computes evaluation metrics of the lab-CT comparison, and computes volumetric contents of pore ice, total ice, organic, and mineral at the high resolution of the original CT data. <em><strong>volumetric_contents_sampleRes_all.csv</strong></em><br> This file can be reproduced by the files listed above and contains, in addition to the data contained in <em>volumetric_contents_sampleRes_lab+CT.csv</em>, the volumetric contents of pore ice, total ice, mineral, and organic as predicted by the regression model at the same (coarse) resolution as the laboratory samples. <em><strong>volumetric_contents_highRes_all.csv</strong></em><br> This file can be reproduced by the files listed above and contains, in addition to the data contained in <em>volumetric_contents_highRes_CT.csv</em>, the volumetric contents of pore ice, total ice, mineral, and organic as predicted by the regression model at the same (high) resolution as the original CT data. More details can be found in the article describing the study.
DOI: 10.6084/m9.figshare.19114355.v1
title: Supplementary Material for: Neonatal Screening for Congenital Adrenal Hyperplasia in Denmark: 10 Years of Experience

description: Introduction: Early detection of salt-wasting congenital adrenal hyperplasia (SW-CAH) is important to reduce CAH related morbidity. However, neonatal screening has shown to have a low positive predictive value (PPV), especially among preterm newborns. Here, the Danish CAH screening is evaluated by comparing incidence and morbidity of SW-CAH ten years before and after introduction of screening. Furthermore, sensitivity, specificity and PPV are determined. Methods: All newborns in Denmark born during 1999-2018 and diagnosed with SW-CAH were identified in the Danish National Patient Registry and/or at the Department of Clinical Genetics, Rigshospitalet. Newborns with a positive neonatal CAH screening were identified at Statens Serum Institut. Correct diagnosis was evaluated by medical record review. Results: A total of 65 newborns with SW-CAH were identified. The incidence of SW-CAH was 5:100,000 both before and after introduction of screening. Performance of sensitivity and specificity of the screening were 97% and 100%, respectively, and the PPV was 55% for the given period. Stratified according to gestational age, the PPV was 33% and 61% for pre -and fullterm newborns, respectively. Though not significant the proportion of newborns presenting with salt-wasting crisis decreased after introduction of screening from 29% vs. 10% (p=0.07). Discussion and Conclusion: Neonatal screening for SW-CAH has not led to an increase in the incidence of newborns diagnosed with SW-CAH. The screening algorithm has effectively identified newborns with SW-CAH. After 2009, there was a tendency towards a lower proportion of newborns with salt-wasting crisis at diagnosis. Finally, the study emphasizes the benefits of using second-tier screening as well as repeated screening of premature newborns.