cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.31168070
title: “It feels like I’m stepping on pebbles”: a qualitative exploration of people’s lived experiences with plantar heel pain

description: Plantar heel pain (PHP) is a prevalent musculoskeletal condition that substantially affects physical function and quality of life. Research has described the clinical features of PHP, but limited research has explored people lived experiences with PHP, especially within Saudi Arabia contexts. This study aims to explore the experiences and perceptions of individuals with PHP in central region of Saudi Arabia. A qualitative study was conducted using semi-structured interviews with individuals with PHP. Interviews were audio-recorded, transcribed verbatim, and thematically analyzed. Participants reviewed the themes to ensure their accuracy and relevance. Twenty-three participants (14 females, 9 males; mean age 43 years) completed this study. Six main themes were identified from the thematic analysis of the interview data: Morning pain is a key feature of living with PHP; Beyond pain, there are other symptoms associated with PHP; PHP has negative impacts on people everyday activity; PHP has psychosocial consequences; Coping strategies with PHP; Personal attributions and understandings of PHP. Participants ensured that the identified themes reflected their lived experiences with PHP. This study findings reveal that PHP affects not only physical function but also emotional well-being and social participation. These findings highlight the need for patient-centred rehabilitation approaches. Individuals with plantar heel pain (PHP) experience a wide range of functional and psychosocial challenges that extend beyond the local heel symptoms.For holistic management of individuals with PHP, healthcare practitioners should adopt a person-centered approach that addresses not only the physical impairments but also the emotional, social, and psychological aspects of PHP.Clinicians should have conversations with those with PHP about the impact of PHP on their daily life and use appropriate, validated outcome measures to capture the full impact of the condition on function, participation, and overall well-being. Individuals with plantar heel pain (PHP) experience a wide range of functional and psychosocial challenges that extend beyond the local heel symptoms. For holistic management of individuals with PHP, healthcare practitioners should adopt a person-centered approach that addresses not only the physical impairments but also the emotional, social, and psychological aspects of PHP. Clinicians should have conversations with those with PHP about the impact of PHP on their daily life and use appropriate, validated outcome measures to capture the full impact of the condition on function, participation, and overall well-being.
DOI: 10.6084/m9.figshare.31168070.v1
title: “It feels like I’m stepping on pebbles”: a qualitative exploration of people’s lived experiences with plantar heel pain

description: Plantar heel pain (PHP) is a prevalent musculoskeletal condition that substantially affects physical function and quality of life. Research has described the clinical features of PHP, but limited research has explored people lived experiences with PHP, especially within Saudi Arabia contexts. This study aims to explore the experiences and perceptions of individuals with PHP in central region of Saudi Arabia. A qualitative study was conducted using semi-structured interviews with individuals with PHP. Interviews were audio-recorded, transcribed verbatim, and thematically analyzed. Participants reviewed the themes to ensure their accuracy and relevance. Twenty-three participants (14 females, 9 males; mean age 43 years) completed this study. Six main themes were identified from the thematic analysis of the interview data: Morning pain is a key feature of living with PHP; Beyond pain, there are other symptoms associated with PHP; PHP has negative impacts on people everyday activity; PHP has psychosocial consequences; Coping strategies with PHP; Personal attributions and understandings of PHP. Participants ensured that the identified themes reflected their lived experiences with PHP. This study findings reveal that PHP affects not only physical function but also emotional well-being and social participation. These findings highlight the need for patient-centred rehabilitation approaches. Individuals with plantar heel pain (PHP) experience a wide range of functional and psychosocial challenges that extend beyond the local heel symptoms.For holistic management of individuals with PHP, healthcare practitioners should adopt a person-centered approach that addresses not only the physical impairments but also the emotional, social, and psychological aspects of PHP.Clinicians should have conversations with those with PHP about the impact of PHP on their daily life and use appropriate, validated outcome measures to capture the full impact of the condition on function, participation, and overall well-being. Individuals with plantar heel pain (PHP) experience a wide range of functional and psychosocial challenges that extend beyond the local heel symptoms. For holistic management of individuals with PHP, healthcare practitioners should adopt a person-centered approach that addresses not only the physical impairments but also the emotional, social, and psychological aspects of PHP. Clinicians should have conversations with those with PHP about the impact of PHP on their daily life and use appropriate, validated outcome measures to capture the full impact of the condition on function, participation, and overall well-being.
DOI: 10.5061/dryad.h18931znt
title: Random Point Sampling (2007-2018) for Three U.S. Cities

description: A point sampling methodology was employed using imagery available through
 Google Earth Pro to assess land cover changes in Buffalo, NY, Denver, CO,
 and San Diego, CA. Analysis began during the Great Recession and concluded
 in 2018. Point sampling was used to classify land cover using 11 land
 cover classes. Further, point pattern analysis was employed to determine
 the existance (or lack thereof) of patterns associated with land cover
 change in each city.
DOI: 10.6084/m9.figshare.31167376
title: Not valid

description: not valid
DOI: 10.6084/m9.figshare.31167376.v2
title: Not valid

description: not valid
DOI: 10.6084/m9.figshare.31168071
title: Occupation-centred intervention for age-related dysphagia: A proof-of-concept study

description: Rehabilitation of age-related dysphagia in older adults remains a complex clinical challenge. The Danish occupational therapy intervention ACTING (ACTivity-based Skill Training of INGestion) was developed employing an occupation-centred approach. Before large-scale evaluation, a proof-of-concept study is needed to explore its potential in real-world practice. To evaluate clinically meaningful outcomes of ACTING and assess implementation fidelity in municipal occupational therapy for dysphagia rehabilitation. A proof-of-concept case-series (<i>N</i> = 5) with pre–post outcome assessment was employed. Primary outcomes included mealtime task performance, dietary variety and perceived change. Secondary outcomes included dysphagia severity, ingestion-related muscle function, nutritional status, interference with joy of life, quality of life, and aspiration pneumonia. Structural and process fidelity data were collected. All participants increased dietary variety, and four achieved clinically meaningful improvements in mealtime performance, accompanied by perceived improvements in eating and drinking. Secondary outcomes showed trends towards improvement. However, outcome variability and inconsistent fidelity were observed, and intervention delivery was influenced by context, resources, and clinician training. ACTING shows promise as a potential occupation-centred approach to dysphagia rehabilitation in municipal practice. Findings support further development, with attention to strengthening implementation fidelity and clinician training before larger-scale testing.
DOI: 10.6084/m9.figshare.31168071.v1
title: Occupation-centred intervention for age-related dysphagia: A proof-of-concept study

description: Rehabilitation of age-related dysphagia in older adults remains a complex clinical challenge. The Danish occupational therapy intervention ACTING (ACTivity-based Skill Training of INGestion) was developed employing an occupation-centred approach. Before large-scale evaluation, a proof-of-concept study is needed to explore its potential in real-world practice. To evaluate clinically meaningful outcomes of ACTING and assess implementation fidelity in municipal occupational therapy for dysphagia rehabilitation. A proof-of-concept case-series (<i>N</i> = 5) with pre–post outcome assessment was employed. Primary outcomes included mealtime task performance, dietary variety and perceived change. Secondary outcomes included dysphagia severity, ingestion-related muscle function, nutritional status, interference with joy of life, quality of life, and aspiration pneumonia. Structural and process fidelity data were collected. All participants increased dietary variety, and four achieved clinically meaningful improvements in mealtime performance, accompanied by perceived improvements in eating and drinking. Secondary outcomes showed trends towards improvement. However, outcome variability and inconsistent fidelity were observed, and intervention delivery was influenced by context, resources, and clinician training. ACTING shows promise as a potential occupation-centred approach to dysphagia rehabilitation in municipal practice. Findings support further development, with attention to strengthening implementation fidelity and clinician training before larger-scale testing.
DOI: 10.6084/m9.figshare.31167376.v1
title: Data and code related to CH<sub>4</sub> emissions

description: This study uses CH<sub>4</sub> emission data to build models and perform simulations to quantify the natural baseline of methane emissions from global rice paddies.
DOI: 10.5061/dryad.q573n5tm0
title: The limits of convergence in the collective behavior of competing marine taxa

description: Collective behaviors in biological systems, such as coordinated movements,
 have important ecological and evolutionary consequences. While many
 studies examine within-species variation in collective behavior, explicit
 comparisons between functionally similar species from different taxonomic
 groups are rare. Therefore, a fundamental question remains: how do
 collective behaviors compare between taxa with morphological and
 physiological convergence, and how might this relate to functional ecology
 and niche partitioning? We examined the collective motion of two
 ecologically similar species from unrelated clades that have competed for
 pelagic predatory niches for over 500 million years—California market
 squid, Doryteuthis opalescens (Mollusca) and Pacific sardine, Sardinops
 sagax (Chordata). We (1) found similarities in how groups of individuals
 from each species collectively aligned, measured by angular deviation, the
 difference between individual orientation and average group heading. We
 also (2) show that conspecific attraction, which we approximated using
 nearest neighbor distance, was greater in sardine than squid. Finally, we
 (3) found that individuals of each species explicitly matched the
 orientation of groupmates, but that these matching responses were less
 rapid in squid than sardine. Based on these results, we hypothesize that
 information sharing is a comparably important function of social grouping
 for both taxa. On the other hand, some capabilities, including
 hydrodynamically conferred energy savings and defense against predators,
 could stem from taxon-specific biology.
description: See manuscript.
DOI: 10.15468/dl.gzf6re
title: Occurrence Download

description: A dataset containing 18987 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Baetis fuscatus"
 ]
}

 The dataset includes 18987 records from 128 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003074-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.rxwdbrvbc
title: Community leaf dry matter content predicts grassland production

description: Plant growth correlates with values of collinear (covarying) traits from
 the leaf economics spectrum.  Environmental variation and
 differences in community composition may alter contributions of these
 traits to plant production and thereby limit the consistency of
 trait-based growth predictions among years and plant
 communities.  We tested effects of interannual variation in
 precipitation and differences in grassland community composition (planted
 monoculture of switchgrass, Panicum virgatum, and mixture of perennial
 herbaceous species) on the utility of two traits from the leaf economics
 spectrum (leaf dry matter content [LDMC] and plant [N]) to predict
 aboveground net primary production (ANP) during spring of 6
 years.  Spatial and temporal variation in spring production
 correlated with community-scale (species-abundance weighted) values of
 both traits, but community LDMC explained 66% of the variance in
 production and accounted for ≥89% of the variance in ANP explained by the
 two traits combined.  The ANP response to trait variation and the
 variance in ANP explained by trait values differed with precipitation and
 between communities.  Greater precipitation increased the
 production response to trait variation by increasing slopes of ANP-trait
 regression relationships and increased the variance in ANP explained by
 trait values.  Communities differed in response to precipitation
 variation and in the role of annual variation in the [N]-LDMC relationship
 in explaining variance in ANP.  Results indicate that mean trends
 in grassland production can be predicted using community-scale values of
 LDMC.  Trait-based predictions of grassland production could be
 improved, however, by accommodating precipitation and community effects on
 production-trait relationships.
description: Data were derived using remote measurements of surface
 reflectance of sunlight from grassland.  The parameters analyzed (ANP,
 LDMC, [N]) were calculated using calibrated relationships between
 reflectance and parameter values.  SAS 9.4 was used to analyze regression
 relationships among calculated parameters.  ANP was analyzed as a function
 of community leaf dry matter content (LDMC) and independent effects of
 community [N], the latter defined as the variation in community [N] not
 accounted for by LDMC.
description: No additional knowledge is required.  Data and their derivation
 should be clear on reading the associated manuscript.
DOI: 10.6086/d11m43
title: Lane-level localization and map matching for advanced CAV applications

description: This data repository is for the "Lane-Level Localization and Map
 Matching for Advanced Connected and Automated Vehicle (CAV)
 Applications" project. This project investigated and
 demonstrated the utility of lane-level map-matching and
 localization. In this project, data were collected in support of
 three folders for Tasks 2, 5, and 6. Task 2: Lane-Level Mapping.
 Experimental data were acquired to assess the accuracy of the USDOT
 Mapping Tool. The data analysis used 39 feature points within about 200
 meters of the intersection verified point and 55 feature points
 distributed over longer distances from the verified point (94 points
 total). Along with the data files, the repository includes a README file
 and two Matlab scripts that process the data. Task 5: Demonstration.
 Experimental data were acquired to assess the probability of correct lane
 determination. Three road tests were performed. The data for each test is
 organized into its own subdirectory. The main directory contains a README
 file that discusses the file contents and how to process them using the
 included Matlab scripts. Task 6: Simulation Study. Each
 simulation run created 4 .csv files: Chicago Intersection Queue
 information, Cranford Intersection Queue information, Iowa Intersection
 Queue information, and general vehicle information. Queue information
 consisted of the estimated queue information and actual queue information
 for each lane versus time. General vehicle information consisted of
 simulation time, vehicle id, vehicle speed, vehicle position, perturbed
 vehicle position, and vehicle direction. Each .csv file has column headers
 for distinction. In total there were 1200 .csv files: 4 .csv files for
 each simulation, 10 simulations for each scenario, and for the 30
 scenarios described in the Simulation Scenario Section.
DOI: 10.5061/dryad.cvdncjt67
title: Multispecies colour polymorphisms associated with contrasting microhabitats in two Mediterranean wrasse radiations

description: Intraspecific colour polymorphisms present unique opportunities to study
 fundamental evolutionary questions, such as the link between ecology and
 phenotype, mechanisms maintaining genetic diversity and their putative
 role in speciation. Wrasses are highly diverse in ecology and morphology
 and harbour a variety of colour polymorphic species. In the Mediterranean
 Sea, wrasses of the tribe Labrini evolved two species radiations each
 harbouring several species with a brown and a green morph. The colour
 morphs occur in complete sympatry in mosaic habitats with rocky outcrops
 and Neptune grass patches. Morph-specific differences had not been
 characterized yet and the evolutionary forces maintaining them remained
 unknown. With genome-wide data for almost all Labrini species, we show
 that species with colour polymorphisms are distributed across the
 phylogeny, but show evidence of hybridization. This suggests that the
 colour morphs are either ancient and have been lost repeatedly, that they
 have evolved repeatedly or have been shared via hybridisation. Focusing on
 two polymorphic species, we find that each colour morph is more common in
 the microhabitat providing the best colour match and that the morphs
 exhibit additional behavioural and morphological differences further
 improving crypsis in their respective microhabitat. We find little
 evidence for genetic differentiation between the morphs in either species.
 Therefore, we propose that these colour morphs represent a multi-niche
 polymorphism as an adaptation to the highly heterogeneous habitat. Our
 study highlights how colour polymorphism can be advantageous in mosaic
 habitats and that Mediterranean wrasses are an ideal system to study
 trans-species polymorphisms, i.e. polymorphisms maintained across several
 species, in adaptive radiations.
description: Phylogeny based on RAD sequencing data and scripts to produce the
 figures and analyses shown in the paper by Fark et al., 2022,
 JEB.
DOI: 10.5061/dryad.fqz612jv8
title: Consuming sunflower pollen reduced pathogen infection but did not alter measures of immunity in bumble bees

description: Certain diets can benefit bee health by reducing pathogens, but the
 mechanism(s) driving these medicinal effects are largely unexplored.
 Recent research found that sunflower (Helianthus annuus) pollen reduces
 the gut pathogen Crithidia bombi in the common eastern bumble bee (Bombus
 impatiens). Here, we tested the effects of sunflower pollen and infection
 on two bee immune metrics to determine if sunflower pollen diet drives
 changes in host immunity that can explain this medicinal effect. Bees were
 infected with C. bombi or not and given either sunflower or wildflower
 pollen. Subsequently, bees received a benign immune challenge or were left
 naïve to test the induced and constitutive immune responses, respectively.
 We measured hemolymph phenoloxidase activity, involved in the melanization
 cascade, and antibacterial activity. Sunflower pollen reduced C. bombi
 infection, but we found no significant pollen diet effect on either immune
 measure. Phenoloxidase activity was also not affected by C. bombi
 infection status; however, uninfected bees were more likely to have
 measurable constitutive antibacterial activity, while infected bees had
 higher induced antibacterial activity. Overall, we found that sunflower
 pollen does not significantly affect the immune responses we measured,
 suggesting that the mechanisms underlying its medicinal effect do not
 involve these bee immune parameters.
DOI: 10.5061/dryad.bcc2fqzf1
title: Gene augmentation prevents retinal degeneration in a CRISPR/Cas9-based mouse model of PRPF31 retinitis pigmentosa

description: Mutations in PRPF31 cause autosomal dominant retinitis pigmentosa, an
 untreatable form of blindness. Gene therapy is a promising treatment for
 PRPF31-retinitis pigmentosa, however, there are currently no suitable
 animal models in which to develop AAV-mediated gene augmentation. Here we
 establish Prpf31 mutant mouse models using AAV-mediated CRISPR/Cas9
 knockout, and characterize the resulting retinal degeneration phenotype.
 Mouse models with early-onset morphological and functional impairments
 like those in patients were established, providing new platforms in which
 to investigate pathogenetic mechanisms and develop therapeutic methods.
 AAV-mediated PRPF31 gene augmentation restored the retinal structure and
 function in a rapidly degenerating mouse model, demonstrating the first in
 vivo proof-of-concept for AAV-mediated gene therapy to treat
 PRPF31-retinitis pigmentosa. AAV-CRISPR/Cas9-PRPF31 knockout constructs
 also mediated efficient PRPF31 knockout in human and non-human primate
 retinal explants, laying a foundation for establishing non-human primate
 models using the method developed here.
DOI: 10.5061/dryad.cz8w9gj5f
title: Data for: Herbivores disrupt the flow of food resources to termites in dryland ecosystems

description: Irruption of herbivore populations due to the extirpation of predators has
 led to dramatic changes in ecosystem functioning worldwide. Herbivores
 compete with other species for their primary source of nutrition, plant
 biomass. Such competition is typically considered to occur between species
 in closely related clades and functional groups but could also occur with
 detritivores that consume senescent plant biomass. Here, we test
 predictions that herbivores’ indirect impacts on dead vegetation increase
 with primary productivity and extend to termites which feed on senescent
 vegetation. We compared dead vegetation cover and termite activity in
 herbivore exclosures and associated grazed plots at 3 locations situated
 along a rainfall gradient in arid Australia where kangaroo populations
 have irrupted. Dead vegetation cover and termite activity
 increased with rainfall in ungrazed plots but showed a negligible response
 to rainfall in grazed plots. Our results suggest that grazing can disrupt
 the flow of energy to detritivores and decouple the relationship between
 termite activity and primary productivity. Such disruption could have
 far-reaching impacts on arid ecosystems because many organisms sit within
 “brown food webs” that are sustained by energy derived from decomposition
 of senescent plant-tissues. 
description: We compared dead vegetation cover and termite activity in
 herbivore exclosures and associated grazed plots at 3 locations situated
 along a rainfall gradient in arid Australia where kangaroo populations
 have irrupted. We used R software to run linear regression models and
 linear anlayses to compare differences in vegetation biomass, termite
 activity, and termite community composition across the exclosures and the
 controls. 
description: R software