DOI: 10.5281/zenodo.6778154
title: TreeSatAI Benchmark Archive for Deep Learning in Forest Applications

description: <strong>Context and Aim</strong> Deep learning in Earth Observation requires large image archives with highly reliable labels for model training and testing. However, a preferable quality standard for forest applications in Europe has not yet been determined. The <em>TreeSatAI </em>consortium investigated numerous sources for annotated datasets as an alternative to manually labeled training datasets. We found the federal forest inventory of Lower Saxony, Germany represents an unseen treasure of annotated samples for training data generation. The respective 20-cm Color-infrared (CIR) imagery, which is used for forestry management through visual interpretation, constitutes an excellent baseline for deep learning tasks such as image segmentation and classification. <strong>Description</strong> The data archive is highly suitable for benchmarking as it represents the <em>real-world</em> data situation of many German forest management services. One the one hand, it has a high number of samples which are supported by the high-resolution aerial imagery. On the other hand, this data archive presents challenges, including class label imbalances between the different forest stand types. The <em>TreeSatAI Benchmark Archive </em>contains: 50,381 image triplets (aerial, Sentinel-1, Sentinel-2) synchronized time steps and locations all original spectral bands/polarizations from the sensors 20 species classes (single labels) 12 age classes (single labels) 15 genus classes (multi labels) 60 m and 200 m patches fixed split for train (90%) and test (10%) data additional single labels such as English species name, genus, forest stand type, foliage type, land cover The geoTIFF and GeoJSON files are readable in any GIS software, such as QGIS. For further information, we refer to the PDF document in the archive and publications in the reference section. <strong>Version history</strong> v.1.0.1 - Minor bug fixes in multi label JSON file and description file v1.0.0 - First release <strong>Citation</strong> Ahlswede et al. (in prep.) <strong>GitHub</strong> Full code examples and pre-trained models from the dataset article (Ahlswede et al. 2022) using the <em>TreeSatAI Benchmark Archive</em> are published on the GitHub repositories of the Remote Sensing Image Analysis (RSiM) Group (https://git.tu-berlin.de/rsim/treesat_benchmark). Code examples for the sampling strategy can be made available by Christian Schulz via email request. <strong>Folder structure</strong> We refer to the proposed folder structure in the PDF file. Folder “aerial” contains the aerial imagery patches derived from summertime orthophotos of the years 2011 to 2020. Patches are available in 60 x 60 m (304 x 304 pixels). Band order is near-infrared, red, green, and blue. Spatial resolution is 20 cm. Folder “s1” contains the Sentinel-1 imagery patches derived from summertime mosaics of the years 2015 to 2020. Patches are available in 60 x 60 m (6 x 6 pixels) and 200 x 200 m (20 x 20 pixels). Band order is VV, VH, and VV/VH ratio. Spatial resolution is 10 m. Folder “s2” contains the Sentinel-2 imagery patches derived from summertime mosaics of the years 2015 to 2020. Patches are available in 60 x 60 m (6 x 6 pixels) and 200 x 200 m (20 x 20 pixels). Band order is B02, B03, B04, B08, B05, B06, B07, B8A, B11, B12, B01, and B09. Spatial resolution is 10 m. The folder “labels” contains a JSON string which was used for multi-labeling of the training patches. Code example of an image sample with respective proportions of 94% for Abies and 6% for Larix is: "Abies_alba_3_834_WEFL_NLF.tif": [["Abies", 0.93771], ["Larix", 0.06229]] The two files “test_filesnames.lst” and “train_filenames.lst” define the filenames used for train (90%) and test (10%) split. We refer to this fixed split for better reproducibility and comparability. The folder “geojson” contains geoJSON files with all the samples chosen for the derivation of training patch generation (point, 60 m bounding box, 200 m bounding box). CAUTION: As we could not upload the aerial patches as a single zip file on Zenodo, you need to download the 20 single species files (aerial_60m_…zip) separately. Then, unzip them into a folder named “aerial” with a subfolder named “60m”. This structure is recommended for better reproducibility and comparability to the experimental results of Ahlswede et al. (2022), <strong>Join the archive</strong> Model training, benchmarking, algorithm development… many applications are possible! Feel free to add samples from other regions in Europe or even worldwide. Additional remote sensing data from Lidar, UAVs or aerial imagery from different time steps are very welcome. This helps the research community in development of better deep learning and machine learning models for forest applications. You might have questions or want to share code/results/publications using that archive? Feel free to contact the authors. <strong>Project description</strong> This work was part of the project <em>TreeSatAI </em>(Artificial Intelligence with Satellite data and Multi-Source Geodata for Monitoring of Trees at Infrastructures, Nature Conservation Sites and Forests). Its overall aim is the development of AI methods for the monitoring of forests and woody features on a local, regional and global scale. Based on freely available geodata from different sources (e.g., remote sensing, administration maps, and social media), prototypes will be developed for the deep learning-based extraction and classification of tree- and tree stand features. These prototypes deal with real cases from the monitoring of managed forests, nature conservation and infrastructures. The development of the resulting services by three enterprises (liveEO, Vision Impulse and LUP Potsdam) will be supported by three research institutes (German Research Center for Artificial Intelligence, TU Remote Sensing Image Analysis Group, TUB Geoinformation in Environmental Planning Lab). <strong>Publications</strong> Ahlswede et al. (2022, in prep.): TreeSatAI Dataset Publication Ahlswede S., Nimisha, T.M., and Demir, B. (2022, in revision): Embedded Self-Enhancement Maps for Weakly Supervised Tree Species Mapping in Remote Sensing Images. IEEE Trans Geosci Remote Sens Schulz et al. (2022, in prep.): Phenoprofiling <strong>Conference contributions</strong> S. Ahlswede, N. T. Madam, C. Schulz, B. Kleinschmit and B. Demіr, "Weakly Supervised Semantic Segmentation of Remote Sensing Images for Tree Species Classification Based on Explanation Methods", IEEE International Geoscience and Remote Sensing Symposium, Kuala Lumpur, Malaysia, 2022. C. Schulz, M. Förster, S. Vulova, T. Gränzig and B. Kleinschmit, “Exploring the temporal fingerprints of mid-European forest types from Sentinel-1 RVI and Sentinel-2 NDVI time series”, IEEE International Geoscience and Remote Sensing Symposium, Kuala Lumpur, Malaysia, 2022. C. Schulz, M. Förster, S. Vulova and B. Kleinschmit, “The temporal fingerprints of common European forest types from SAR and optical remote sensing data”, AGU Fall Meeting, New Orleans, USA, 2021. B. Kleinschmit, M. Förster, C. Schulz, F. Arias, B. Demir, S. Ahlswede, A. K. Aksoy, T. Ha Minh, J. Hees, C. Gava, P. Helber, B. Bischke, P. Habelitz, A. Frick, R. Klinke, S. Gey, D. Seidel, S. Przywarra, R. Zondag and B. Odermatt, “Artificial Intelligence with Satellite data and Multi-Source Geodata for Monitoring of Trees and Forests”, Living Planet Symposium, Bonn, Germany, 2022. C. Schulz, M. Förster, S. Vulova, T. Gränzig and B. Kleinschmit, (2022, submitted): “Exploring the temporal fingerprints of sixteen mid-European forest types from Sentinel-1 and Sentinel-2 time series”, ForestSAT, Berlin, Germany, 2022.
description: Acknowledgements TreeSatAI was funded by the Bundesministerium für Bildung und Forschung (BMBF) under the grant number 01IS20014A. We are grateful to the Niedersächsische Landesforsten for providing the forest management data, the inventory data and the aerial imagery.