cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21568716.v2
title: Preferred Reporting Items for Systematic review and Meta-Analysis Protocols (PRISMA-P) checklist for: Pregnancy and birth complications and long-term adverse maternal mental health outcomes: a systematic review and meta-analysis protocol.

description: Pregnancy and birth complications and long-term adverse maternal mental outcomes: a systematic review and meta-analysis
DOI: 10.6084/m9.figshare.21568716.v3
title: Preferred Reporting Items for Systematic review and Meta-Analysis Protocols (PRISMA-P) checklist for: Pregnancy and birth complications and long-term adverse maternal mental health outcomes: a systematic review and meta-analysis protocol.

description: PRISMA-P Checklist PRISMA flow diagram
DOI: 10.6084/m9.figshare.21568716
title: Preferred Reporting Items for Systematic review and Meta-Analysis Protocols (PRISMA-P) checklist and flow diagram

description: PRISMA-P Checklist PRISMA flow diagram
DOI: 10.6084/m9.figshare.21568716.v4
title: Preferred Reporting Items for Systematic review and Meta-Analysis Protocols (PRISMA-P) checklist and flow diagram

description: PRISMA-P Checklist PRISMA flow diagram
DOI: 10.18712/ess10sc
title: ESS10 Self-completion - integrated file, edition 1.0
DOI: 10.5519/qd.ojnazm74
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (490 records)
DOI: 10.34740/kaggle/dsv/4660598
title: COVID Vaccination in World (updated daily)
DOI: 10.57841/casdc.0000032
title: 黄河三角洲
DOI: 10.5281/zenodo.6341761
title: Tara Pacific Pocillopora and Cladocopium gene expression levels

description: The tables in this dataset contain the expression levels of <em>Pocillopora </em>and <em>Cladocopium </em>genes of 102 <em>Pocillopora </em>coral colonies collected in the framework of Tara Pacific expedition.
description: Pocillopora fragments from 102 colonies were processed to extract then sequence RNA. Metatranscriptomic reads (Illumina-generated 150-bp, paired-end) were separately aligned to predicted coding sequences (CDS) of the Pocillopora meandrina coral host reference genome, the CDS of the Cladocopium goreaui genome, and a Durusdinium transcriptome using Burrows–Wheeler Transform Aligner (BWA-mem, v0.7.15) with the default settings. Host- and symbiont-mapped reads were then sorted and processed using SAMtools v1.10.282 to generate respective bam files. A read was considered a host contig if its sequence aligned to the P. meandrina predicted coding sequence with ≥ 95% of sequence identity and with ≥ 50% of the sequence aligned. Reads aligned to Cladocopium goreaui coding sequences with a cutoff of ≥ 98% of sequence identity over ≥ 80% of the read length were retained as symbiont reads. Reads were further filtered to remove those in which more than 75% of the read length was low complexity or less than 30% was high complexity. Read counts were normalized as transcript per million (TPM).
DOI: 10.57841/casdc.0000033
title: 黄河三角洲
DOI: 10.18712/ess10
title: ESS10 - integrated file, edition 2.0
DOI: 10.6084/m9.figshare.21674318
title: The seasonal effect of coastal current and upwelling on the dynamics of dissolved organic matter in the northwestern South China Sea

description: In this study, based on the examination of field data from two cruises (spring and summer), we present the absorption coefficients and fluorescence intensities of CDOM and FDOM, and other qualitative parameters (i.e., spectral slope and fluorescence indices) in the northwestern SCS.
DOI: 10.6084/m9.figshare.21674297
title: Terrorism, Budget Data APP.xlsx

description: The data collection contains the nubmers of budget expenditures for national economy, healthcare, social policy, uneployment rate compared with the number of terrrorist attacks in Dagestan, Ingushetia, and Kabardino-Balkaria (Russian Federation) from 2000 to 2019-20.
DOI: 10.6084/m9.figshare.21674297.v1
title: Terrorism, Budget Data APP.xlsx

description: The data collection contains the nubmers of budget expenditures for national economy, healthcare, social policy, uneployment rate compared with the number of terrrorist attacks in Dagestan, Ingushetia, and Kabardino-Balkaria (Russian Federation) from 2000 to 2019-20.
DOI: 10.5281/zenodo.7398395
title: Morpho-anatomical traits explain the effects of bacterial-feeding nematodes on soil bacterial community composition and plant growth and nutrition

description: Soil Bacterial populations V3-V4, of the 16S rRNA gene using the primers 341F CCTAYGGGRBGCASCAG and 806R GGACTACNNGGGTATCTAAT.
description: V2 update adds additional metadata in .rdata file V3 update sequence data in tar.gz file V4 update : Adding OTU seeds .fasta file adding ANR grant
DOI: 10.5281/zenodo.7398396
title: Morpho-anatomical traits explain the effects of bacterial-feeding nematodes on soil bacterial community composition and plant growth and nutrition

description: Soil Bacterial populations V3-V4, of the 16S rRNA gene using the primers 341F CCTAYGGGRBGCASCAG and 806R GGACTACNNGGGTATCTAAT.
DOI: 10.5281/zenodo.7398663
title: Morpho-anatomical traits explain the effects of bacterial-feeding nematodes on soil bacterial community composition and plant growth and nutrition

description: Soil Bacterial populations V3-V4, of the 16S rRNA gene using the primers 341F CCTAYGGGRBGCASCAG and 806R GGACTACNNGGGTATCTAAT.
description: V2 update adds additional metadata in .rdata file
DOI: 10.5281/zenodo.7400249
title: Morpho-anatomical traits explain the effects of bacterial-feeding nematodes on soil bacterial community composition and plant growth and nutrition

description: Soil Bacterial populations V3-V4, of the 16S rRNA gene using the primers 341F CCTAYGGGRBGCASCAG and 806R GGACTACNNGGGTATCTAAT.
description: V2 update adds additional metadata in .rdata file V3 update sequence data in tar.gz file
DOI: 10.5281/zenodo.7400434
title: Morpho-anatomical traits explain the effects of bacterial-feeding nematodes on soil bacterial community composition and plant growth and nutrition

description: Soil Bacterial populations V3-V4, of the 16S rRNA gene using the primers 341F CCTAYGGGRBGCASCAG and 806R GGACTACNNGGGTATCTAAT.
description: V2 update adds additional metadata in .rdata file V3 update sequence data in tar.gz file V4 update : Adding OTU seeds .fasta file adding ANR grant
DOI: 10.6084/m9.figshare.21674249.v1
title: Supplementary Material for: Exploring the Heterogeneity of IgE-Mediated Food Allergy through Latent Class Analysis

description: <b><i>Introduction:</i></b> Food allergy (FA) is a heterogeneous disease with multiple morbidities and a huge burden for patients and healthcare systems. Variable manifestations, comorbidities (atopic dermatitis [AD], asthma, and/or allergic rhinitis [AR]), severity (anaphylaxis), and outcomes suggest the existence of different endotypes that cluster analyses may reveal. In this study, we aimed to investigate distinct subgroups among patients with FAs using data from 524 children/adolescents. <b><i>Methods:</i></b> 524 patients with IgE-mediated FA (353 male [67%]; median age 4.4 years [IQR:3.0–6.8]), 354 (68%) had multiple FA. The history of AD, asthma, AR, and anaphylaxis was recorded in 59.4%, 35.5%, 24.2%, and 51.2% of the patients, respectively. Latent class analysis was carried out to distinguish clinical FA phenotypes using five potential markers of allergy severity (single/multiple FA, never/inactive/current asthma and AD, AR, and anaphylaxis). <b><i>Results:</i></b> Three distinct phenotypes were identified: (1) <i>multiple FA with eczema and respiratory multimorbidity</i> (42%), (2) <i>multiple FA with persistent eczema</i> (34%), and (3) <i>single FA with respiratory multimorbidity without eczema</i> (24%). Compared with the single FA cluster, the prevalence of AD was significantly higher in multiple FA groups. Cluster 1 had the highest frequency of AR and allergic asthma, and the lowest rate of total tolerance of FA. <b><i>Discussion:</i></b> We put forward the hypothesis of underlying pathogenesis according to the clinical phenotypes. While skin barrier defect may play a dominant role in the pathogenesis in Cluster 2, immune dysregulation may be dominant in Cluster 3. In Cluster 1, the most severe group, a combination of both skin barrier defects and immune dysregulation may be responsible for the clinical features.
DOI: 10.6084/m9.figshare.21388128.v1
title: Supplementary Material for: Effect of Traditional Chinese Medicine on Psoriasis Vulgaris: A Meta Analysis and Systematic Review

description: Background: Psoriasis is a chronic, inflammatory autoimmune skin disease that affects 2%–3% of the world’s population. Lesions are mainly found on the limbs, trunk, and scalp, but may also affect other parts of the body, and the cause is not yet known. The chronic and relapsing nature of psoriasis makes it one of the most complex and important diseases in current dermatology research. Methods: The search was conducted using PubMed, Embase, Cochrane Library, Web of Science, China National Knowledge Internet, Wanfang Data, VIP journals database, and Chinese biomedical literature database (CBM). The retrieval time limit was from the establishment of the database to January 2021. The quality of the selected literature were evaluated, and ReView Manager 5.3 was used for Meta-analysis after randomized controlled trials were filtered. Results: Finally, 16 randomized controlled trials involving 1967 patients were included. The total effective rate (OR =3.68,95% CI[2.73,4.95], P&lt;0.00001), cure rate (OR =2.01, 95% CI[1.62,2.49]c, P &lt;0.00001), and PASI score (OR =-1.83, 95% CI[-2.39, -1.26], P &lt;0.00001) of the traditional Chinese medicine (TCM) were superior than the Diyin tablet.. Conclusion: In the treatment of psoriasis, traditional Chinese medicine (TCM) shows higher efficacy than the Diyin tablet. However, due to the limitations of the included literature, we still need more double-blind, placebo-controlled trials with large samples and multiple centers to provide high-quality clinical evidence.
DOI: 10.57841/casdc.0000034
title: 黄河三角洲
DOI: 10.5281/zenodo.7361610
title: Fast measurement of the gradient system transfer function at 7 T

description: Measurement data complementing our publication "Fast measurement of the gradient system transfer function at 7 T" (DOI: https://doi.org/10.1002/mrm.29523). The corresponding MATLAB code is available at https://github.com/expRad/Fast_GIRF .
DOI: 10.5281/zenodo.7361609
title: Fast measurement of the gradient system transfer function at 7 T

description: Measurement data complementing our publication "Fast measurement of the gradient system transfer function at 7 T" (DOI: https://doi.org/10.1002/mrm.29523). The corresponding MATLAB code is available at https://github.com/expRad/Fast_GIRF .
DOI: 10.57841/casdc.0000035
title: 123
DOI: 10.25403/upresearchdata.21511740.v1
title: Millimeter accurate multi-view stereopsis reconstructions of railway profiles in Southern Africa

description: This dataset forms part of the thesis titled : Railway conditioning monitoring using a hybrid multi-view stereopsis and real-time kinematic geolocation pipeline for dense reconstruction: The "MVSNet.zip" archive contains the associated Spooroog software (Python) and trained neural networks that were developed to post-process the datasets, as described in Chapter 6 of the thesis. The "Experiments.zip" archive contains measurement and experimental data as described in Chapter 7 of the thesis, obtained from both the University of Pretoria's Test Track faciilty (LiDAR (Hovermap), Spooroog, digital level, UAV, structured light scanner (EinScan), geometry measurement system (KRAB) and real-time kinematic antenna surface mapping (RTK-ASM)) as well as in Ermelo, KwaZulu-Natal (Hovermap LiDAR and Spooroog). These measurements of railway profiles are subject to a variety of illumination and material conditions, represent both existing and novel measurement and instrumentation techniques investigated. The "Analysed results.zip" contains the processed data as presented in Chapter 8 of the thesis. These are subdivided into individual sub-chapters corresponding to the thesis. This also includes the Python scripts used to generate the graphs and composite visuals. Each file is a compressed archive (zip) that can be accessed using an archive manager after downloading.
DOI: 10.25403/upresearchdata.21511740
title: Millimeter accurate multi-view stereopsis reconstructions of railway profiles in Southern Africa

description: This dataset forms part of the thesis titled : Railway conditioning monitoring using a hybrid multi-view stereopsis and real-time kinematic geolocation pipeline for dense reconstruction: The "MVSNet.zip" archive contains the associated Spooroog software (Python) and trained neural networks that were developed to post-process the datasets, as described in Chapter 6 of the thesis. The "Experiments.zip" archive contains measurement and experimental data as described in Chapter 7 of the thesis, obtained from both the University of Pretoria's Test Track faciilty (LiDAR (Hovermap), Spooroog, digital level, UAV, structured light scanner (EinScan), geometry measurement system (KRAB) and real-time kinematic antenna surface mapping (RTK-ASM)) as well as in Ermelo, KwaZulu-Natal (Hovermap LiDAR and Spooroog). These measurements of railway profiles are subject to a variety of illumination and material conditions, represent both existing and novel measurement and instrumentation techniques investigated. The "Analysed results.zip" contains the processed data as presented in Chapter 8 of the thesis. These are subdivided into individual sub-chapters corresponding to the thesis. This also includes the Python scripts used to generate the graphs and composite visuals. Each file is a compressed archive (zip) that can be accessed using an archive manager after downloading.
DOI: 10.5281/zenodo.7381002
title: Citizen science project descriptions as science communication texts - the good, the bad, and the ugly

description: This study aimed to determine to what extent do CS project descriptions actually contain the kinds of information relevant to prospective participants and whether this information is conveyed in a comprehensible and attractive manner. To this end, we conducted a qualitative content analysis of a random sample of 120 English-language project descriptions stored in the CS Track database. The coding rubric used for this study is based on the ten-step template for writing engaging project descriptions we recently designed and published. The sample was produced as follows: After creating a dataset containing only English-language project descriptions, we excluded all descriptions which consist of less than 100 or more than 500 words. Texts of less than 100 words cannot be expected to contain a significant amount of information. Project descriptions of more than 500 words are less likely to be read in their entirety than shorter texts and thus ill-suited to the task of capturing the readers’ interest and prompting them to join the project in question. Finally, we applied the ‘random’ function of RStudio to randomly select 120 texts from the resulting dataset of 1283 descriptions. The qualitative content analysis was performed in two consecutive steps. First, in order to ensure that the coding rubric is fit for purpose and all categories within it well-defined and demarcated, all three members of the research team independently coded 40 project descriptions. After discussing the results and making slight modifications to the coding rubric, each team member coded roughly one third of the remaining 80 descriptions. Preliminary results suggest that the majority of project descriptions in our sample fail to mention how citizen scientists will benefit from participating, what kind of training they will receive, how their contributions will be acknowledged, and whether they will have access to project results. Furthermore, the project’s goals, its target audience, and the tasks volunteers will be expected to complete are very often not described explicitly and clearly enough. For instance, very few project descriptions contain concrete information on required skills and equipment or on the time commitment associated with participation. This dataset contains the coding rubric used to analyse project descriptions and a visualisation of preliminary results.
DOI: 10.5281/zenodo.7381001
title: Citizen science project descriptions as science communication texts - the good, the bad, and the ugly

description: This study aimed to determine to what extent do CS project descriptions actually contain the kinds of information relevant to prospective participants and whether this information is conveyed in a comprehensible and attractive manner. To this end, we conducted a qualitative content analysis of a random sample of 120 English-language project descriptions stored in the CS Track database. The coding rubric used for this study is based on the ten-step template for writing engaging project descriptions we recently designed and published. The sample was produced as follows: After creating a dataset containing only English-language project descriptions, we excluded all descriptions which consist of less than 100 or more than 500 words. Texts of less than 100 words cannot be expected to contain a significant amount of information. Project descriptions of more than 500 words are less likely to be read in their entirety than shorter texts and thus ill-suited to the task of capturing the readers’ interest and prompting them to join the project in question. Finally, we applied the ‘random’ function of RStudio to randomly select 120 texts from the resulting dataset of 1283 descriptions. The qualitative content analysis was performed in two consecutive steps. First, in order to ensure that the coding rubric is fit for purpose and all categories within it well-defined and demarcated, all three members of the research team independently coded 40 project descriptions. After discussing the results and making slight modifications to the coding rubric, each team member coded roughly one third of the remaining 80 descriptions. Preliminary results suggest that the majority of project descriptions in our sample fail to mention how citizen scientists will benefit from participating, what kind of training they will receive, how their contributions will be acknowledged, and whether they will have access to project results. Furthermore, the project’s goals, its target audience, and the tasks volunteers will be expected to complete are very often not described explicitly and clearly enough. For instance, very few project descriptions contain concrete information on required skills and equipment or on the time commitment associated with participation. This dataset contains the coding rubric used to analyse project descriptions and a visualisation of preliminary results.
DOI: 10.18712/ess10sccf
title: ESS10 Self-completion - data from Contact forms, edition 1.0
DOI: 10.5517/ccdc.csd.cc29141k
title: CCDC 2116247: Experimental Crystal Structure Determination

description: Related Article: Zhou Wu, Isabell Nußbruch, Simon Nier, Stefanie Dehnen|2022|JACS Au|2|204|doi:10.1021/jacsau.1c00473
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc298csr
title: CCDC 2123214: Experimental Crystal Structure Determination

description: Related Article: Zhou Wu, Isabell Nußbruch, Simon Nier, Stefanie Dehnen|2022|JACS Au|2|204|doi:10.1021/jacsau.1c00473
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29144n
title: CCDC 2116250: Experimental Crystal Structure Determination

description: Related Article: Zhou Wu, Isabell Nußbruch, Simon Nier, Stefanie Dehnen|2022|JACS Au|2|204|doi:10.1021/jacsau.1c00473
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.21586238
title: Meristics Data from Hidden species diversity in an iconic living fossil vertebrate

description: Ancient, species-poor lineages persistently occur across the Tree of Life. These unique lineages are likely to contain unrecognized species diversity masked by the low rates of morphological evolution that characterize living fossils. Halecomorphi is a lineage of ray-finned fishes that diverged from its closest relatives over 200 Ma and is represented by only one living species in eastern North America, the Bowfin <i>Amia calva</i> Linnaeus. We use double digest restriction-site associated DNA sequencing and morphology to illuminate recent speciation in bowfins. Our results support the delimitation of a second living species of <i>Amia</i> with the timing of diversification dating to the Plio-Pleistocene. This delimitation expands the species diversity of an ancient lineage that is integral to studies of vertebrate genomics and development, yet is facing growing conservation threats driven by the caviar fishery.
DOI: 10.6084/m9.figshare.21586238.v1
title: Meristics Data from Hidden species diversity in an iconic living fossil vertebrate

description: Ancient, species-poor lineages persistently occur across the Tree of Life. These unique lineages are likely to contain unrecognized species diversity masked by the low rates of morphological evolution that characterize living fossils. Halecomorphi is a lineage of ray-finned fishes that diverged from its closest relatives over 200 Ma and is represented by only one living species in eastern North America, the Bowfin <i>Amia calva</i> Linnaeus. We use double digest restriction-site associated DNA sequencing and morphology to illuminate recent speciation in bowfins. Our results support the delimitation of a second living species of <i>Amia</i> with the timing of diversification dating to the Plio-Pleistocene. This delimitation expands the species diversity of an ancient lineage that is integral to studies of vertebrate genomics and development, yet is facing growing conservation threats driven by the caviar fishery.
DOI: 10.6084/m9.figshare.21586241
title: Morphological data from Hidden species diversity in an iconic living fossil vertebrate

description: Ancient, species-poor lineages persistently occur across the Tree of Life. These unique lineages are likely to contain unrecognized species diversity masked by the low rates of morphological evolution that characterize living fossils. Halecomorphi is a lineage of ray-finned fishes that diverged from its closest relatives over 200 Ma and is represented by only one living species in eastern North America, the Bowfin <i>Amia calva</i> Linnaeus. We use double digest restriction-site associated DNA sequencing and morphology to illuminate recent speciation in bowfins. Our results support the delimitation of a second living species of <i>Amia</i> with the timing of diversification dating to the Plio-Pleistocene. This delimitation expands the species diversity of an ancient lineage that is integral to studies of vertebrate genomics and development, yet is facing growing conservation threats driven by the caviar fishery.