cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14079932
title: Microscopy Imaging Dataset: Trypanosoma brucei Bloodstream Form Classification Using Deep Learning

description: This dataset provides a comprehensive collection of microscopic images and associated labels, specifically designed to facilitate the automated classification of Trypanosoma brucei bloodstream forms—slender and stumpy. Accurate differentiation of these life cycle stages is vital for understanding the parasite's biology, transmission dynamics, and adaptation mechanisms in its mammalian host.

Contents:



Image Data: Microscopic images of T. brucei bloodstream forms captured under standard imaging conditions, encompassing a broad array of image quality, cellular arrangements, and morphological characteristics.

Label Data: Annotation files for each image, specifying cellular forms as slender or stumpy, essential for supervised machine learning applications.

Supplementary Files: Additional Excel files providing information on training, testing, and validation splits, alongside test results for model evaluation.


Purpose:

This dataset serves as a valuable resource for researchers in parasitology, machine learning, and computational biology. It supports investigations into the biology and life cycle of T. brucei, while also providing a robust testbed for developing, validating, and benchmarking image processing and classification algorithms tailored to parasite morphology.

Data Collection and Methodology:

The dataset was compiled using advanced deep learning techniques, integrating the Cellpose segmentation algorithm with a custom-trained Xception model optimized for classifying T. brucei forms. The model achieved 97% classification accuracy, demonstrating effective application in handling complex cell images and distinguishing between slender and stumpy forms in challenging imaging conditions.

Usage:

Researchers are encouraged to use this dataset to:



Analyze and classify the life cycle stages of T. brucei bloodstream forms in microscopic images.

Develop and test deep learning models for single-cell image segmentation and classification.

Explore cellular morphology patterns and refine machine learning approaches for other single-cell imaging applications.


Citation:

Please cite the original dataset if you utilize this resource in your research to acknowledge its contribution to the field.

Access and Availability:

This dataset is openly available through Zenodo, enabling researchers to download, explore, and apply it in various fields, from parasitology to advanced computational biology.
DOI: 10.5281/zenodo.15072493
title: Microscopy Imaging Dataset: Trypanosoma brucei Bloodstream Form Classification Using Deep Learning

description: This dataset provides a comprehensive collection of microscopic images and associated labels, specifically designed to facilitate the automated classification of Trypanosoma brucei bloodstream forms—slender and stumpy. Accurate differentiation of these life cycle stages is vital for understanding the parasite's biology, transmission dynamics, and adaptation mechanisms in its mammalian host.

Contents:



Image Data: Microscopic images of T. brucei bloodstream forms captured under standard imaging conditions, encompassing a broad array of image quality, cellular arrangements, and morphological characteristics.

Label Data: Annotation files for each image, specifying cellular forms as slender or stumpy, essential for supervised machine learning applications.

Supplementary Files: Additional Excel files providing information on training, testing, and validation splits, alongside test results for model evaluation.


Purpose:

This dataset serves as a valuable resource for researchers in parasitology, machine learning, and computational biology. It supports investigations into the biology and life cycle of T. brucei, while also providing a robust testbed for developing, validating, and benchmarking image processing and classification algorithms tailored to parasite morphology.

Data Collection and Methodology:

The dataset was compiled using advanced deep learning techniques, integrating the Cellpose segmentation algorithm with a custom-trained Xception model optimized for classifying T. brucei forms. The model achieved 97% classification accuracy, demonstrating effective application in handling complex cell images and distinguishing between slender and stumpy forms in challenging imaging conditions.

Usage:

Researchers are encouraged to use this dataset to:



Analyze and classify the life cycle stages of T. brucei bloodstream forms in microscopic images.

Develop and test deep learning models for single-cell image segmentation and classification.

Explore cellular morphology patterns and refine machine learning approaches for other single-cell imaging applications.


Citation:

Please cite the original dataset if you utilize this resource in your research to acknowledge its contribution to the field.

Access and Availability:

This dataset is openly available through Zenodo, enabling researchers to download, explore, and apply it in various fields, from parasitology to advanced computational biology.
DOI: 10.15468/dl.b5n82v
title: Occurrence Download

description: A dataset containing 482772 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rana temporaria Linnaeus, 1758",
 "Year 1995-2025"
 ]
}

 The dataset includes 482772 records from 1794 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023157-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n7ustn
title: Occurrence Download

description: A dataset containing 247230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Robinia pseudoacacia L."
 ]
}

 The dataset includes 247230 records from 736 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0143483-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.axpvsq
title: Occurrence Download

description: A dataset containing 772 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Freshwater Lamprey Survey Data"
 ]
}

 The dataset includes 772 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005827-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.grmxle
title: Occurrence Download

description: A dataset containing 11808 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 2016-2018",
 "Geometry POLYGON((-73.65315 45.49427,-73.59673 45.46543,-73.55576 45.51156,-73.61441 45.53825,-73.6375 45.50809,-73.65315 45.49427))",
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 11808 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043176-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bgjc92
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Atta laevigata (Smith, 1858)"
 ]
}

 The dataset includes 108 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0348542-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2hdknu
title: Occurrence Download

description: A dataset containing 2640 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Phenology and biological traits of migrating river lamprey sampled by electrofishing in the Oir river (France)."
 ]
}

 The dataset includes 2640 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005803-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pyafvb
title: Occurrence Download

description: A dataset containing 805 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Agrostis nevadensis Boiss."
 ]
}

 The dataset includes 805 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043178-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fj9d67
title: Occurrence Download

description: A dataset containing 7543 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cyanocorax cristatellus (Temminck, 1823)",
 "Year 1990-2020"
 ]
}

 The dataset includes 7543 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140341-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xk6j9r
title: Occurrence Download

description: A dataset containing 772 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Freshwater Lamprey Survey Data"
 ]
}

 The dataset includes 772 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005847-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gtrjuv
title: Occurrence Download

description: A dataset containing 131 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Bruchela rufipes (A.G.Olivier, 1790)"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 131 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043180-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3j2kys
title: Occurrence Download

description: A dataset containing 12143 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amaranthus spinosus L."
 ]
}

 The dataset includes 12143 records from 621 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005856-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y6awjr
title: Occurrence Download

description: A dataset containing 1610 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Anthyllis vulneraria subsp. alpestris (Kit.) Asch. & Graebn."
 ]
}

 The dataset includes 1610 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0145025-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cwh5cw
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 2017-2019",
 "TaxonKey is Doricha eliza (R.Lesson & Delattre, 1839)"
 ]
}

 The dataset includes 40 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043180-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d5kyxk
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Lampetra soljani, a new brook lamprey from the southern Adriatic Sea basin (Petromyzontiformes: Petromyzontidae)"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005817-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4cwcwr
title: Occurrence Download

description: A dataset containing 1518 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "TaxonKey is Ardea alba Linnaeus, 1758"
 ]
}

 The dataset includes 1518 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0345878-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bnz7gb
title: Occurrence Download

description: A dataset containing 6604 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Heteropoda venatoria (Linnaeus, 1767))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6604 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044794-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2mown3
title: Occurrence Download

description: A dataset containing 350 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Synsepalum dulcificum (Schumach. & Thonn.) Daniell"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 350 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043181-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.85ur57
title: Occurrence Download

description: A dataset containing 1552 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lathyrus saxatilis (Vent.) Vis.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1552 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005846-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/0vx-j6m-c9d
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ffv-nz3-j0n
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-z9t-75ty
title: PAN-00048968 - coin/coin-related, Philips IV (1621-1665), kwart patagon

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00048968&lt;/p&gt;
description: Modified: 2019-10-28T08:56:58+01:00
DOI: 10.3535/5hk-gah-1l0
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cqf-sl8-jnp
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n0h-wjg-10k
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-z9t-7832
title: Transect-rapport 1722: Een archeologisch bureauonderzoek en inventariserend veldonderzoek, verkennende en karterende fase. Rosmalen, Zandstraat (ong.), gemeente 's-Hertogenbosch (NB).

description: &lt;p&gt;In januari 2018 is een archeologisch vooronderzoek uitgevoerd in een plangebied aan de Zandstraat in Rosmalen, op twee adresloze &lt;br&gt;percelen (G4305 en G4307; gemeente ‘s-Hertogenbosch). De aanleiding van het onderzoek is de voorgenomen bouw van een woning in het plangebied. Voor deze werkzaamheden is een omgevingsvergunning noodzakelijk. Ten behoeve van de voorgenomen ingrepen in het plangebied zal grondverzet plaatsvinden, waardoor de oorspronkelijke bodem en daarmee eventueel aanwezige archeologische resten in het gebied kunnen worden verstoord. Om de voorgenomen ontwikkelingen te kunnen laten plaatsvinden is een omgevingsvergunning noodzakelijk. Als onderdeel van de vergunningsaanvraag is conform het bestemmingsplan Molenhoek-Sparrenburg-A59 (2012) een archeologisch vooronderzoek nodig. Dit rapport beschrijft de resultaten van het archeologisch vooronderzoek in het plangebied en voorziet in die plicht.&lt;/p&gt;
DOI: 10.3535/amf-rfw-0a8
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wn3-w6l-a3v
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cwq-8xe-ft9
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fv2-sa3-d8p
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-z9t-7chb
title: Resten van ongewervelde dieren uit de vulling van de beerput onder Dijkstraat 30 te Appingedam
title: Scarab 011

description: &lt;p&gt;Op grond van de verdeling van de gevonden oecologische groepen mosmijten kan geconcludeerd worden dat het landschap rond Appingedam tijdens de gebruiksperiode van de beerput zeer open en nat was en dat de zee daarin zeker nog een aantoonbare invloed had.&lt;/p&gt;
DOI: 10.3535/4de-raq-rwn
title: Pieridae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/61v-n6e-65a
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nlv-x61-3py
title: Lasiocampidae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-z9t-7ww9
title: PAN-00004561 - open plain arm ring with single knobbed terminals

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00004561&lt;/p&gt;
description: Modified: 2019-04-25T10:33:44+02:00
DOI: 10.3535/31v-sfv-ba1
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/eqq-wk3-bpw
title: Lasiocampidae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1j9-ye7-djz
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h1m-mgj-c3m
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-z9t-8sg9
title: Analecta Praehistorica Leidensia 35-36
title: Beyond the site: The Saalian archaeological record at Maastricht-Belvédère (The Netherlands)

description: &lt;p&gt;Proefschrift van D. de Loecker over ruimtelijke verspreidingspatronen van artefacten uit het Saalien bij Maastricht-Belvédère.&lt;/p&gt;
DOI: 10.3535/sja-1g9-4lx
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c42-3bn-dcx
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-z9t-ak9g
title: Uiterwaarden bij de stad Rhenen, locaties 7 en 8
title: Een Inventariserend Veldonderzoek in de vorm van een verkennend booronderzoek

description: &lt;p&gt;ADC ArcheoProjecten heeft in maart 2015 een Inventariserend Veldonderzoek uitgevoerd op de locatie Uiterwaarden bij de stad Rhenen, deellocaties 7 en 8 (afb. 1 en 2). Aanleiding is de voorgenomen herontwikkeling van het gebied.&lt;/p&gt;&lt;p&gt;Op basis van het bureauonderzoek bleek dat in de Palmerswaard eind 20e eeuw grootschalige kleiwinning had plaatsgevonden, waardoor een groot aantal diepe putten en plassen in dit gebied zijn ontstaan. Als gevolg hiervan is in een groot deel van het deelgebied de natuurlijke bodemopbouw verstoord geraakt. Toch moest binnen deellocaties 7 en 8 nog rekening worden gehouden met archeologische vondsten en sporen in nog niet recent verstoorde lagen. Het gaat daarbij dan met name om archeologische resten uit de periode Late Middeleeuwen – Nieuwe tijd.&lt;/p&gt;&lt;p&gt;Teneinde deze verwachting te toetsen en aan te vullen werd in het plangebied een verkennend booronderzoek uitgevoerd. Hieruit bleek dat in deellocatie 7 de diepst aangeboorde laag bestond uit beddingafzettingen van de Nederrijn (Formatie van Echteld). Deze gingen in het gebied geleidelijk over naar zandige oever- en vervolgens siltige oeverafzettingen van hetzelfde systeem.&lt;br&gt;Tevens leek, gezien de geringe dikte van de bouwvoor en het grillige verloop van de maaiveldhoogte, de top van de oeverafzettingen te zijn afgegraven. Eventueel aanwezige archeologische resten, die zich vanaf het oorspronkelijke maaiveld zouden bevinden, zijn door deze werkzaamheden aangetast. Tijdens het booronderzoek zijn in de intacte oeverafzettingen geen aanwijzingen aangetroffen, zoals ontkalkte en/of humeus gevormde niveaus, die duiden op een potentieel bewoonbaar oppervlak.&lt;/p&gt;&lt;p&gt;De ondergrond in deellocatie 8 werd vanaf 35 tot 70 cm -mv gevormd door de intacte beddingafzettingen van de Nederrijn. Deze gaan met een scherpe grens over naar een omgewerkte laag beddingafzettingen. De bovenste 10 cm betreft een recentelijk gevormde bouwvoor. Op locatie 8 heeft afgraving van de oever- en deels de beddingafzettingen plaatsgevonden. Eventueel aanwezige archeologische resten zijn hierdoor verdwenen. In de beddingafzettingen zelf worden geen archeologische resten verwacht.&lt;/p&gt;&lt;p&gt;Gezien de afgravingen in de deellocaties en het gebrek aan aanwijzingen voor mogelijke bewoning, worden in de gebieden geen archeologische resten meer verwacht. ADC ArcheoProjecten adviseert derhalve om het terrein vrij te geven voor de voorgenomen ontwikkeling. Het is echter niet volledig uit te sluiten dat binnen het onderzochte gebied toch nog archeologische resten voorkomen.&lt;/p&gt;
DOI: 10.3535/rd0-adf-0lq
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xyt-90y-6l0
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kwg-86g-ad8
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pak-6xf-9mp
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-z9t-bem9
title: PAN-00084614 - D-shaped single looped buckle

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00084614&lt;/p&gt;
description: Modified: 2021-12-15T15:04:52+01:00
DOI: 10.3535/dcn-9lk-3jj
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pb4-8gn-5qn
title: Arhopala epimuta (Moore, 1857)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v0e-q00-gm5
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.