cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/th089093
title: TH089093
title: Austroeupatorium

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th089094
title: TH089094
title: Corynanthe

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th089095
title: TH089095
title: Neoaquastroma

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th089096
title: TH089096
title: Thysanothecium

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th089097
title: TH089097
title: Vaginatispora

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.6084/m9.figshare.14189637.v1
title: Additional file 12 of Identification of 11 candidate structured noncoding RNA motifs in humans by comparative genomics

description: Additional file 12. Motif MYH7_3778 Stockholm file.
DOI: 10.5281/zenodo.10623788
title: molecular data for Genetic Algorithm Mutations for Molecules with a Hybrid Language Model-Based GAN Architecture

description: moleclar data generated by the work titled 'Genetic Algorithm Mutations for Molecules with a Hybrid Language Model-Based GAN Architecture' as described in https://zenodo.org/records/8387351.
DOI: 10.5281/zenodo.10623789
title: molecular data for Genetic Algorithm Mutations for Molecules with a Hybrid Language Model-Based GAN Architecture

description: moleclar data generated by the work titled 'Genetic Algorithm Mutations for Molecules with a Hybrid Language Model-Based GAN Architecture' as described in https://zenodo.org/records/8387351.
DOI: 10.6084/m9.figshare.13662996
title: Additional file 2 of Integrative transcriptomic, proteomic, and machine learning approach to identifying feature genes of atrial fibrillation using atrial samples from patients with valvular heart disease

description: Additional file 2. Results of the microarray meta-analysis.
DOI: 10.6084/m9.figshare.14189888.v1
title: Additional file 10 of Conservation and trans-regulation of histone modification in the A and B subgenomes of polyploid wheat during domestication and ploidy transition

description: Additional file 10: Table S9. Gene Ontology (GO) enrichment terms and genes used for GO analysis of H3K4me3 modification in TAA10 → ETW → XX329 ploidy transition process.
DOI: 10.6084/m9.figshare.22619494
title: Additional file 7 of Comprehensive analysis of cuproptosis-related long noncoding RNA for predicting prognostic and diagnostic value and immune landscape in colorectal adenocarcinoma

description: Additional file 7: Table 6. The results of GSEA analysis in low-risk group
DOI: 10.6084/m9.figshare.6849743.v1
title: Table S5 MicroRNA target site analysis for differential expressed circRNAs from Identification and characterization of circular RNAs in Qinchuan cattle testis

description: Circular RNA (circRNA) is a new class of non-coding RNA that has recently attracted researchers' interest. Studies have demonstrated that circRNA can function as microRNA sponges or competing endogenous RNAs. Although circRNA has been explored in some species and tissues, the genetic basis of testis development and spermatogenesis in cattle remains unknown. We performed ribo-depleted total RNA-Seq to detect circRNA expression profiles of neonatal (one week old) and adult (4 years old) Qinchuan cattle testes. We obtained 91 112 596 and 80 485 868 clean reads and detected 21 753 circRNAs. A total of 4248 circRNAs were significantly differentially expressed between neonatal and adult cattle testes. Among these circRNAs, 2225 were upregulated, and 2023 were downregulated in adult cattle testis. Genomic feature, length distribution and other characteristics of the circRNAs in cattle testis were studied. Moreover, Gene Ontology and KEGG pathway analyses were performed for source genes of circRNAs. These source genes were mainly involved in tight junction, adherens junction, TGFβ signalling pathway and reproduction, such as <i>PIWIL1, DPY19L2, SLC26A8, IFT81, SMC1B, IQCG</i> and <i>TTLL5</i>. CircRNA expression patterns were validated by RT-qPCR. Our discoveries provide a solid foundation for the identification and characterization of key circRNAs involved in testis development or spermatogenesis.
DOI: 10.6084/m9.figshare.13663002.v1
title: Additional file 3 of Integrative transcriptomic, proteomic, and machine learning approach to identifying feature genes of atrial fibrillation using atrial samples from patients with valvular heart disease

description: Additional file 3. Results of the proteomic study.
DOI: 10.6084/m9.figshare.20479553
title: Additional file 2 of Maintenance versus replacement of medical equipment: a cost-minimization analysis among district hospitals in Nepal

description: Additional file 2. Full cost calculations and formatted data. Detailed steps of the cost calculation and all data needed for replication in pre-processed format.
DOI: 10.6084/m9.figshare.14189706.v1
title: Additional file 9 of Identification of 11 candidate structured noncoding RNA motifs in humans by comparative genomics

description: Additional file 9. Motif ICE2_92,051 Stockholm file.
DOI: 10.6084/m9.figshare.14189648
title: Additional file 6 of Genetic disruption of serine biosynthesis is a key driver of macular telangiectasia type 2 aetiology and progression

description: Additional file 6: Table S5. Endophenotypes analysis results.
DOI: 10.6084/m9.figshare.20479737
title: Additional file 2 of In silico-guided metabolic engineering of Bacillus subtilis for efficient biosynthesis of purine nucleosides by blocking the key backflow nodes

description: Additional file 2: Table S1. The production yield, productivity, and conversion rate of inosine engineered strains. Table S2. Genes and reactions used in the iBsu1103V2 model. Table S3. The lower bounds and upper bounds of reactions based on the 13C flux data. Table S4. The targets possible targets for overproduction of IMP and inosine predicted by OptForceMUST.
DOI: 10.6084/m9.figshare.7898492
title: Could semiquantitative analysis of real-time ultrasound elastography distinguish more liver parenchyma alterations of nonalcoholic fatty liver disease in patients with polycystic ovary syndrome?

description: ABSTRACT Objective: Nonalcoholic fatty liver disease is the commonest diffuse liver disease, of which women with polycystic ovary syndrome are at an increased risk. The aim of the present study was to assess the diagnostic value of the semiquantitative strain parameters of real-time ultrasound elastography for nonalcoholic fatty liver disease in patients with polycystic ovary syndrome. Subjects and methods: Thirty-five polycystic ovary syndrome patients with nonalcoholic fatty liver disease, 70 polycystic ovary syndrome patients without nonalcoholic fatty liver disease, and 70 healthy female controls of reproductive age were included. All participants underwent ultrasonic examination and semiquantitative analysis of real-time ultrasound elastography of the liver. Results: Main semi quantitative strain parameters, such as average strain value, differed significantly among groups polycystic ovary syndrome with nonalcoholic fatty liver disease, polycystic ovary syndrome without nonalcoholic fatty liver disease, and control (87.02 ± 10.16 vs. 96.31 ± 11.44 vs. 104.49 ± 7.28, p &lt; 0.001). Clinical and laboratory parameters differed significantly between the two subgroups with low or high average strain value. For diagnostic value of average strain value for elevated aminotransferase, the area under the curve was 0.808 (range 0.721-0.895). In multiple linear regression analysis, polycystic ovary syndrome, waist circumference, and metabolic syndrome were stand-alone independent factors associated with average strain value among subjects without nonalcoholic fatty liver disease. Conclusion: Semiquantitative real-time ultrasound elastography analysis could distinguish liver parenchyma alterations in patients with polycystic ovary syndrome more sensitively. The diagnostic value of the proposed method for nonalcoholic fatty liver disease need further research.
DOI: 10.6084/m9.figshare.7898504.v1
title: Diagnostic Performance of QFR for the Evaluation of Intermediate Coronary Artery Stenosis Confirmed by Fractional Flow Reserve

description: Abstract Introduction: Quantitative flow ratio (QFR) is a novel method enabling efficient computation of FFR from three-dimensional quantitative coronary angiography (3D QCA) and thrombolysis in myocardial infarction (TIMI) frame counting. We decided to perform a systematic review and quantitative meta-analysis of the literature to determine the correlation between the diagnosis of functionally significant stenosis obtained by QFR versus FFR and to determine the diagnostic accuracy of QFR for intermediate coronary artery stenosis. Methods: We searched PubMed, Embase, and Web of Science for studies concerning the diagnostic performance of QFR. Our meta-analysis was performed using the DerSimonian and Laird random effects model to determine sensitivity, specificity, positive likelihood ratio (LR+), negative likelihood ratio (LR-), and diagnostic odds ratio (DOR). The sROC was used to determine diagnostic test accuracy. Results: Nine studies consisting of 1175 vessels in 1047 patients were included in our study. The pooled sensitivity, specificity, LR+, LR-, and DOR for QFR were 0.89 (95% CI: 0.86-0.92), 0.88 (95% CI: 0.86-0.91), 6.86 (95% CI,: 5.22-9.02), 0.14 (95% CI: 0.10-0.21), and 53.05 (95% CI: 29.75-94.58), respectively. The area under the summary receiver operating characteristic (sROC) curve for QFR was 0.94. Conclusion: QFR is a simple, useful, and noninvasive modality for diagnosis of functional significance of intermediate coronary artery stenosis.
DOI: 10.6084/m9.figshare.14189640.v1
title: Additional file 13 of Identification of 11 candidate structured noncoding RNA motifs in humans by comparative genomics

description: Additional file 13. Motif ZNF516–12356 Stockholm file.
DOI: 10.6084/m9.figshare.20481436.v1
title: Visualizing fluid transport inside orally disintegrating tablets and changes in tablets using real-time X-ray radiography and X-ray computed tomography

description: To investigate the disintegration of wet- and dry-compressed orally disintegrating (OD) tablets, with synchrotron radiation as the X-ray source. Pharmaceutical tablets are vital for the treatment of various diseases. Therefore, they are constantly developed to ensure desirable characteristics. In particular, OD tablets need to disintegrate immediately after absorbing saliva. How these tablets absorb saliva is key to enhancing rapid product development. Recently, absorption processes have been investigated using various noninvasive techniques, including X-ray radiography and X-ray computed tomography. However, X-ray radiography studies on how water without a contrast agent is absorbed, moves, and causes a tablet to swell are scarce. The use of a contrast agent is associated with some shortcomings, including complex data analysis in some instances, alterations in the viscosity of water, and potential influence on fluid transport inside the tablet, thus possibly affecting the disintegration process. Real-time X-ray radiography was used to monitor the disintegration of various tablets, while X-ray computed tomography and software were used to create 3 D images. We demonstrated how pure water penetrated the wet-compressed tablet faster than inside the dry-compressed tablet, and how the latter swelled more. X-ray computed tomography showed the presence of voids in the tablets following water absorption. Our methods are promising for nondestructive fluid absorption and transport investigations inside OD tablets.
DOI: 10.6084/m9.figshare.13663002
title: Additional file 3 of Integrative transcriptomic, proteomic, and machine learning approach to identifying feature genes of atrial fibrillation using atrial samples from patients with valvular heart disease

description: Additional file 3. Results of the proteomic study.
DOI: 10.5281/zenodo.10619660
title: Source data for "A Wireless Battery-free Eye Modulation Patch for High Myopia Therapy"

description: Source data for "A Wireless Battery-free Eye Modulation Patch for High Myopia Therapy".
DOI: 10.5281/zenodo.10619661
title: Source data for "A Wireless Battery-free Eye Modulation Patch for High Myopia Therapy"

description: Source data for "A Wireless Battery-free Eye Modulation Patch for High Myopia Therapy".
DOI: 10.6084/m9.figshare.23625528
title: Additional file 3 of Reduced intestinal lipid absorption improves glucose metabolism in aged G2-Terc knockout mice

description: Additional file 3.
DOI: 10.6084/m9.figshare.23625387
title: Additional file 2 of Characterization of large-scale genomic differences in the first complete human genome

description: Additional file 2: Table S1. The large-scale SVs discovered by whole-genome alignment (PAV). Table S2. The large-scale SVs discovered by graph-based (minigraph). Table S3. The large-scale SVs discovered by read-mapping (PBSV). Table S4. The 238 validated large SVs. Table S5. The summary table of the disease-related or gene-related discrepant regions. Table S6. The gene differences between the two human reference genomes in 155 validated insertion and deletion large SVs. Table S7. Genotyping insertions and deletions on HPRC and HGSVC assemblies. Table S8. The GO enrichment of the genes in the 27 disease-related discrepant regions. Table S9. The three KLRC haplotypes identified from the 94 long-read genome assemblies. Table S10. The frequency of KLRC haplotype in the 94 long-read assemblies and in the inferred 1KG dataset. Table S11.The frequency of KLRC-haps in the different populations. Table S12.The frequency of the six SNVs in GnomAD and 1KG database. Table S13. The likelihood of the branch/branch-site models in PAML. Table S14. Copy number difference of protein-coding and SV-affected genes between human and non-human primates. Table S15. GC content of KLRC2&3 in different species. Table S16. The selection test on small sample size model.
DOI: 10.5281/zenodo.10623643
title: Brain–heart dynamics during emotional processing under uncertain conditions

description: Time series of heart rate (HR), heart rate variability (HRV)

The csv files labeled HR_PP, HR_PU, HR_UP, and HR_UU detail changes in HR during the period of -1 to 12 s for each participant in the PP, PU, UP, and UU conditions, respectively. Correspondingly, the csv files named HRV_PP, HRV_PU, HRV_UP, and HRV_UU detail the changes in HRV during the period of -1 to 20 s for each participant in the PP, PU, UP, and UU conditions, respectively.

Time series of heartbeat-evoked potentials (HEPs) 

Within the HEP folder, each csv file details the HEP of an individual participant in a specific condition during the cue or pic phase. Additionally, the HEP_sur folder includes the surrogate HEP data. The spatial neighbors of EEG electrodes are stored in the csv file named adj_matrix.

Participants’ information

The gender, age, and BDI scores of participants are in the csv file named subject_info.

Abbreviations:



BDI: Beck Depression Inventory

PP: predictably pleasant

PU: predictably unpleasant

UP: unpredictably pleasant

UU: unpredictably unpleasant
DOI: 10.5281/zenodo.10623644
title: Brain–heart dynamics during emotional processing under uncertain conditions

description: Time series of heart rate (HR), heart rate variability (HRV)

The csv files labeled HR_PP, HR_PU, HR_UP, and HR_UU detail changes in HR during the period of -1 to 12 s for each participant in the PP, PU, UP, and UU conditions, respectively. Correspondingly, the csv files named HRV_PP, HRV_PU, HRV_UP, and HRV_UU detail the changes in HRV during the period of -1 to 20 s for each participant in the PP, PU, UP, and UU conditions, respectively.

Time series of heartbeat-evoked potentials (HEPs) 

Within the HEP folder, each csv file details the HEP of an individual participant in a specific condition during the cue or pic phase. Additionally, the HEP_sur folder includes the surrogate HEP data. The spatial neighbors of EEG electrodes are stored in the csv file named adj_matrix.

Participants’ information

The gender, age, and BDI scores of participants are in the csv file named subject_info.

Abbreviations:



BDI: Beck Depression Inventory

PP: predictably pleasant

PU: predictably unpleasant

UP: unpredictably pleasant

UU: unpredictably unpleasant
DOI: 10.21954/ou.rd.25118078
title: Multi-view table tennis video sequence for ball detection purposes

description: This video database contains 3 multi-view table tennis sequences which were captured during local league matches. The sequences were filmed using up to 4 high speed cameras (Casio EX-F1). The original purpose of these sequences is for ball tracking research. A ground truth, which contains the ball location in each frame identified by human volunteers, is also available for some of the sequences. These sequences can be used for non-commercial research purposes only.If you use these data files for your research, please cite the following paper of ours:Wong, Patrick; Myint, Hnin; Dooley, Laurence and Hopgood, Adrian (2023).A multi-view automatic table tennis umpiring framework. <i>Proceedings of the Institution of Mechanical Engineers, Part P: Journal of Sports Engineering and Technology</i> (early access).DOI: https://doi.org/10.1177/17543371231171433<br>
DOI: 10.6084/m9.figshare.23625387.v1
title: Additional file 2 of Characterization of large-scale genomic differences in the first complete human genome

description: Additional file 2: Table S1. The large-scale SVs discovered by whole-genome alignment (PAV). Table S2. The large-scale SVs discovered by graph-based (minigraph). Table S3. The large-scale SVs discovered by read-mapping (PBSV). Table S4. The 238 validated large SVs. Table S5. The summary table of the disease-related or gene-related discrepant regions. Table S6. The gene differences between the two human reference genomes in 155 validated insertion and deletion large SVs. Table S7. Genotyping insertions and deletions on HPRC and HGSVC assemblies. Table S8. The GO enrichment of the genes in the 27 disease-related discrepant regions. Table S9. The three KLRC haplotypes identified from the 94 long-read genome assemblies. Table S10. The frequency of KLRC haplotype in the 94 long-read assemblies and in the inferred 1KG dataset. Table S11.The frequency of KLRC-haps in the different populations. Table S12.The frequency of the six SNVs in GnomAD and 1KG database. Table S13. The likelihood of the branch/branch-site models in PAML. Table S14. Copy number difference of protein-coding and SV-affected genes between human and non-human primates. Table S15. GC content of KLRC2&3 in different species. Table S16. The selection test on small sample size model.
DOI: 10.5281/zenodo.10162632
title: An integrated glaciological and meteorological dataset for Yulong Snow Mountain

description: Data Introduction

The dataset presented here offers a comprehensive insight into the dynamics of Yulong Snow Mountain (YSM), situated in a low latitude and high altitude region in the Northern Hemisphere (27.106°N, 100.205°E). The glaciers of YSM, characterized as temperate (warm) glaciers, exhibit a notable response to global environmental changes. Baishui River Glacier No. 1 (BGR1) stands as the largest and most renowned glacier on Yulong Snow Mountain. 

To reveal the glacier and climate change situation on the YSM, an alpine glacier and meteorological monitoring network has been established between 3,046 m and 4,700 m a.s.l. since 2006. This monitoring system comprises a glacier observation field and four automatic weather stations (AWSs), generating a long-term series of glacier and meteorological datasets that are the closest to the equator in the Northern Hemisphere. The dataset offers fundamental information for research on glaciers, climate, and hydrology, as well as for data collection and processing in regions of low latitude and high altitude. Moreover, it holds significant theoretical importance for the coordinated comparison of glaciers and meteorology in global hotspots.

File Names and Variable Descriptions

YSM: Yulong Snow Mountain

BRG1: Baishui River Glacier No.1

GHZ: Ganhaizi

MNP: Maoniuping

UC: Upper Cableway

UG: Upper Glacier

Ta: air temperature (℃)

RH: relative humidity (%)

Ws: wind speed (m/s)

Ppt: precipitation (mm)

P: air pressure (hPa)