cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5419408.v1
title: Aggregate data for the forthcoming PLOS ONE article "Beyond funding: Acknowledgement patterns in biomedical, natural and social sciences"

description: Aggregate data for the PLOS ONE article "Beyond funding: Acknowledgement patterns in biomedical, natural and social sciences."<br>Table 1. Explained and cumulative variance for each axis<br>Table 2. Relative contributions of the factor to the element for disciplines (expressed as a percentage)<br>Table 3. Number of papers indexed in WoS (all and with funding acknowledgements) and percentage of papers with funding acknowledgements, by discipline (2015)<br>For the purposes of the analysis presented in Fig 1 and 2, the dataset was partitioned by discipline and a Correspondence Analysis was applied to these subsets and using a MATLAB program.Fig 1. Bidimensional Correspondence Analysis for acknowledgements patterns by discipline (plane 1-2)<br>Fig 2. Bidimensional Correspondence Analysis for acknowledgements patterns by discipline (plane 3-4).<br>Supporting Information:S1 Fig. Frequency distribution of noun phrases found in acknowledgementsS1 Table. Frequency of the 214 most frequent noun phrases, by disciplineS2 Table. Quality of representation of the rows (cumulative contribution for each NP)S3 Table. Quality of representation of the columns (cumulative contribution for each discipline)
DOI: 10.6084/m9.figshare.5419360
title: Regeneration of <i>Cryptomeria japonica</i> seedlings on pine logs in a forest damaged by pine wilt disease: effects of wood decomposer fungi on seedling survival and growth

description: Evaluating the environmental factors that affect seedling regeneration on deadwood is important for predicting the forest recovery process after dieback events. Pine wilt disease (PWD) has killed many adult trees of <i>Pinus densiflora</i> in recent decades and consequently created a huge accumulation of deadwood in lowland forests in Japan. These deadwoods are now providing nice seedbeds for variety of tree species including <i>Cryptomeria japonica</i>, which is the most important timber species in Japan. In the present study, we tested the effects of various factors on <i>Cryptomeria</i> seedlings growing on decayed <i>Pinus</i> logs in Japan. In total, 126 individuals of <i>Cryptomeria</i> seedlings (height &lt;50 cm) colonizing on 22 pine logs were investigated. During a 5-month research period from May to October 2015, the survival rate of the seedlings was 87.3%, and the maximum height growth was 32.0 cm. Analysis using generalized linear mixed models revealed that delignified white-rot wood in the sapwood of the logs negatively affected seedling survival and growth. These results suggest that type of wood decay, reflecting fungal wood decomposer activity, would strongly affect survival and growth of <i>Cryptomeria</i> seedlings, although logs were important microsites for their establishment after pine wilt disease.
DOI: 10.6084/m9.figshare.5419366
title: Dental shape variation of Neogene Pachyrukhinae (Mammalia, Notoungulata, Hegetotheriidae): systematics and evolutionary implications for the late Miocene <i>Paedotherium</i> species

description: <i>Paedotherium</i> was the last representative of the pachyrukhines (Notoungulata, Hegetotheriidae), a small rabbit- or caviomorph rodent-like clade, with hypsodont and simplified dentition. In contrast to the Pliocene <i>Paedotherium</i> species, the Miocene species are less known and mainly represented by teeth. Different systematic studies of <i>Paedotherium</i> based on the same set of subtle trait variations of the cheek teeth have arrived at different proposals. With the aim of testing the validity and analysing the morphological variation of <i>Paedotherium</i> species, and assessing the definition and diagnostic value of teeth traits, we performed a dual approach: a traditional qualitative study and exploratory geometric morphometric analyses of the upper and lower cheek teeth (both, partial and complete series). In addition, the configurations of cheek tooth shape were used as landmark characters, in combination with traditional characters, to perform a phylogenetic analysis. We propose the validity of the late Miocene <i>P. borrelloi</i> Zetti, and the assignment of north-western Argentinian representatives of <i>Paedotherium</i> to <i>P.</i> aff. <i>minor</i>. <i>Paedotherium borrelloi</i> is morphologically more similar and phylogenetically more closely related to the Pliocene <i>P. bonaerense</i> than to other <i>Paedotherium</i> species. Our results suggest that during the late Miocene the coexistence of two <i>Paedotherium</i> lineages was already established, whose main morphological differences persisted or even intensified in Pliocene representatives, supporting a more complex evolutionary scenario than previously believed.
DOI: 10.6084/m9.figshare.5419384
title: Data for Shields stress 4.4

description: small and large grain number ratio time-series for Shields stress 4.4. Concentration map of large grains can be made using the following contour plot commands in MATLAB or other data analysis packages:<br>%%%%nlratio_tot = nlg./(nsm+nlg); for i=1:458 time_ts(i,:)=time; end y_pos = (1:1:458)*(25/458); for i=1:length(time) y_mesh(:,i)=y_pos; end [xq,yq] = meshgrid(0:0.0005:1,0:0.175:25); vq = griddata(time_ts(1:458,1:length(time)),25-y_mesh(1:458,1:length(time)),nlratio_tot(1:458,1:length(time)),xq,yq); figure; [C,h] = contourf(xq,yq,vq,'LineStyle', 'none','LevelStep', 0.01); colormap parula;%%%%
DOI: 10.6084/m9.figshare.5419408.v2
title: Aggregate data for the forthcoming PLOS ONE article "Beyond funding: Acknowledgement patterns in biomedical, natural and social sciences"

description: Aggregate data for the PLOS ONE article "Beyond funding: Acknowledgement patterns in biomedical, natural and social sciences."<br>Table 1. Explained and cumulative variance for each axis<br>Table 2. Relative contributions of the factor to the element for disciplines (expressed as a percentage)<br>Table 3. Number of papers indexed in WoS (all and with funding acknowledgements) and percentage of papers with funding acknowledgements, by discipline (2015)<br>For the purposes of the analysis presented in Fig 1 and 2, the dataset was partitioned by discipline and a Correspondence Analysis was applied to these subsets and using a MATLAB program.Fig 1. Bidimensional Correspondence Analysis for acknowledgements patterns by discipline (plane 1-2)<br>Fig 2. Bidimensional Correspondence Analysis for acknowledgements patterns by discipline (plane 3-4).<br>Supporting Information:S1 Fig. Frequency distribution of noun phrases found in acknowledgementsS1 Table. Frequency of the 214 most frequent noun phrases, by disciplineS2 Table. Quality of representation of the rows (cumulative contribution for each NP)S3 Table. Quality of representation of the columns (cumulative contribution for each discipline)
DOI: 10.6084/m9.figshare.5419360.v1
title: Regeneration of <i>Cryptomeria japonica</i> seedlings on pine logs in a forest damaged by pine wilt disease: effects of wood decomposer fungi on seedling survival and growth

description: Evaluating the environmental factors that affect seedling regeneration on deadwood is important for predicting the forest recovery process after dieback events. Pine wilt disease (PWD) has killed many adult trees of <i>Pinus densiflora</i> in recent decades and consequently created a huge accumulation of deadwood in lowland forests in Japan. These deadwoods are now providing nice seedbeds for variety of tree species including <i>Cryptomeria japonica</i>, which is the most important timber species in Japan. In the present study, we tested the effects of various factors on <i>Cryptomeria</i> seedlings growing on decayed <i>Pinus</i> logs in Japan. In total, 126 individuals of <i>Cryptomeria</i> seedlings (height &lt;50 cm) colonizing on 22 pine logs were investigated. During a 5-month research period from May to October 2015, the survival rate of the seedlings was 87.3%, and the maximum height growth was 32.0 cm. Analysis using generalized linear mixed models revealed that delignified white-rot wood in the sapwood of the logs negatively affected seedling survival and growth. These results suggest that type of wood decay, reflecting fungal wood decomposer activity, would strongly affect survival and growth of <i>Cryptomeria</i> seedlings, although logs were important microsites for their establishment after pine wilt disease.
DOI: 10.6084/m9.figshare.5419357
title: Improving the pedagogical effectiveness of medical videos

description: Videos are often employed in medical cursus, yet few guidelines are available to help with their production. Mayer’s cognitive theory of multimedia learning is the most cited evidence-based framework for improving pedagogical effectiveness of multimedia content. Based on this framework, we identified four workflow interventions to improve the effectiveness of video content in the context of medical education: (1) choosing appropriate content; (2) optimizing the voiceover; (3) optimizing the supporting visuals and (4) planning the shooting schedule in advance. Content creators should think about pedagogical effectiveness and aim to improve their work by applying evidence-based principles.
DOI: 10.6084/m9.figshare.5419339
title: Movie block for calculating velocity profile at Shields stress 4.7

description: Movie block at the beginning of experiemnt for calculating velocity profile at Shields stress 4.7
DOI: 10.6084/m9.figshare.5419357.v2
title: Improving the pedagogical effectiveness of medical videos

description: Videos are often employed in medical cursus, yet few guidelines are available to help with their production. Mayer’s cognitive theory of multimedia learning is the most cited evidence-based framework for improving pedagogical effectiveness of multimedia content. Based on this framework, we identified four workflow interventions to improve the effectiveness of video content in the context of medical education: (1) choosing appropriate content; (2) optimizing the voiceover; (3) optimizing the supporting visuals and (4) planning the shooting schedule in advance. Content creators should think about pedagogical effectiveness and aim to improve their work by applying evidence-based principles.
DOI: 10.6084/m9.figshare.5419366.v2
title: Dental shape variation of Neogene Pachyrukhinae (Mammalia, Notoungulata, Hegetotheriidae): systematics and evolutionary implications for the late Miocene <i>Paedotherium</i> species

description: <i>Paedotherium</i> was the last representative of the pachyrukhines (Notoungulata, Hegetotheriidae), a small rabbit- or caviomorph rodent-like clade, with hypsodont and simplified dentition. In contrast to the Pliocene <i>Paedotherium</i> species, the Miocene species are less known and mainly represented by teeth. Different systematic studies of <i>Paedotherium</i> based on the same set of subtle trait variations of the cheek teeth have arrived at different proposals. With the aim of testing the validity and analysing the morphological variation of <i>Paedotherium</i> species, and assessing the definition and diagnostic value of teeth traits, we performed a dual approach: a traditional qualitative study and exploratory geometric morphometric analyses of the upper and lower cheek teeth (both, partial and complete series). In addition, the configurations of cheek tooth shape were used as landmark characters, in combination with traditional characters, to perform a phylogenetic analysis. We propose the validity of the late Miocene <i>P. borrelloi</i> Zetti, and the assignment of north-western Argentinian representatives of <i>Paedotherium</i> to <i>P.</i> aff. <i>minor</i>. <i>Paedotherium borrelloi</i> is morphologically more similar and phylogenetically more closely related to the Pliocene <i>P. bonaerense</i> than to other <i>Paedotherium</i> species. Our results suggest that during the late Miocene the coexistence of two <i>Paedotherium</i> lineages was already established, whose main morphological differences persisted or even intensified in Pliocene representatives, supporting a more complex evolutionary scenario than previously believed.
DOI: 10.6084/m9.figshare.5419366.v1
title: Dental shape variation of Neogene Pachyrukhinae (Mammalia, Notoungulata, Hegetotheriidae): systematics and evolutionary implications for the late Miocene <i>Paedotherium</i> species

description: <i>Paedotherium</i> was the last representative of the pachyrukhines (Notoungulata, Hegetotheriidae), a small rabbit- or caviomorph rodent-like clade, with hypsodont and simplified dentition. In contrast to the Pliocene <i>Paedotherium</i> species, the Miocene species are less known and mainly represented by teeth. Different systematic studies of <i>Paedotherium</i> based on the same set of subtle trait variations of the cheek teeth have arrived at different proposals. With the aim of testing the validity and analysing the morphological variation of <i>Paedotherium</i> species, and assessing the definition and diagnostic value of teeth traits, we performed a dual approach: a traditional qualitative study and exploratory geometric morphometric analyses of the upper and lower cheek teeth (both, partial and complete series). In addition, the configurations of cheek tooth shape were used as landmark characters, in combination with traditional characters, to perform a phylogenetic analysis. We propose the validity of the late Miocene <i>P. borrelloi</i> Zetti, and the assignment of north-western Argentinian representatives of <i>Paedotherium</i> to <i>P.</i> aff. <i>minor</i>. <i>Paedotherium borrelloi</i> is morphologically more similar and phylogenetically more closely related to the Pliocene <i>P. bonaerense</i> than to other <i>Paedotherium</i> species. Our results suggest that during the late Miocene the coexistence of two <i>Paedotherium</i> lineages was already established, whose main morphological differences persisted or even intensified in Pliocene representatives, supporting a more complex evolutionary scenario than previously believed.
DOI: 10.6084/m9.figshare.5419300
title: DOI list for text mining

description: List of Digital Object Identifiers used for text mining.
DOI: 10.6084/m9.figshare.5419315
title: Transcription-driven DNA methylation setting on the mouse <i>Peg3</i> locus

description: The imprinting of the mouse <i>Peg3</i> domain is controlled through the Peg3-DMR, which obtains its maternal-specific DNA methylation during oogenesis. In the current study, we deleted an oocyte-specific alternative promoter, termed U1, which is localized 20 kb upstream of the Peg3-DMR. Deletion of this alternative promoter resulted in complete removal of the maternal-specific DNA methylation on the Peg3-DMR. Consequently, the imprinted genes in the <i>Peg3</i> domain become biallelic in the mutants with maternal transmission of the deletion. Expression levels of the imprinted genes were also affected in the mutants: 2-fold upregulation of <i>Peg3</i> and <i>Usp29</i> and downregulation of <i>Zim1</i> to basal levels. Breeding experiments further indicated under-representation of females among the surviving mutants, a potential sex-biased outcome from the biallelic expression of the <i>Peg3</i> domain. Overall, the results suggest that U1-driven transcription may be required for establishing oocyte-specific DNA methylation on the <i>Peg3</i> domain.
DOI: 10.6084/m9.figshare.5419315.v1
title: Transcription-driven DNA methylation setting on the mouse <i>Peg3</i> locus

description: The imprinting of the mouse <i>Peg3</i> domain is controlled through the Peg3-DMR, which obtains its maternal-specific DNA methylation during oogenesis. In the current study, we deleted an oocyte-specific alternative promoter, termed U1, which is localized 20 kb upstream of the Peg3-DMR. Deletion of this alternative promoter resulted in complete removal of the maternal-specific DNA methylation on the Peg3-DMR. Consequently, the imprinted genes in the <i>Peg3</i> domain become biallelic in the mutants with maternal transmission of the deletion. Expression levels of the imprinted genes were also affected in the mutants: 2-fold upregulation of <i>Peg3</i> and <i>Usp29</i> and downregulation of <i>Zim1</i> to basal levels. Breeding experiments further indicated under-representation of females among the surviving mutants, a potential sex-biased outcome from the biallelic expression of the <i>Peg3</i> domain. Overall, the results suggest that U1-driven transcription may be required for establishing oocyte-specific DNA methylation on the <i>Peg3</i> domain.
DOI: 10.6084/m9.figshare.5419339.v1
title: Movie block for calculating velocity profile at Shields stress 4.7

description: Movie block at the beginning of experiemnt for calculating velocity profile at Shields stress 4.7
DOI: 10.6084/m9.figshare.5419357.v1
title: Improving the pedagogical effectiveness of medical videos

description: Videos are often employed in medical cursus, yet few guidelines are available to help with their production. Mayer’s cognitive theory of multimedia learning is the most cited evidence-based framework for improving pedagogical effectiveness of multimedia content. Based on this framework, we identified four workflow interventions to improve the effectiveness of video content in the context of medical education: (1) choosing appropriate content; (2) optimizing the voiceover; (3) optimizing the supporting visuals and (4) planning the shooting schedule in advance. Content creators should think about pedagogical effectiveness and aim to improve their work by applying evidence-based principles.
DOI: 10.6084/m9.figshare.5419195
title: LaserDiodeStabilizerCircuit

description: Electronical circuit with a STM microcomputer, Nucleo-L152RE, for stabilizing laser diode outputs. Code for the microcomputer is available in Github page (https://github.com/yuichi-takeuchi/LaserDiodeStabilizer).
DOI: 10.6084/m9.figshare.5419210
title: RAWDATA_Figshare.xlsx

description: Behaviour of long duration (e.g. lying, sitting) was recorded instantaneously every 5 s, while behaviour of short duration (e.g. clawing, body shaking) was recorded using one-zero sampling every 5 s. Lip licking, which is easy to count, was recorded using continuous sampling (frequency). If the cat was out of range of the camera, vocalisations were still recorded.
DOI: 10.6084/m9.figshare.5419216
title: Painters network

description: Data associated with paper: "Community detection with metadata in a network of influence between painters"
DOI: 10.6084/m9.figshare.5419171
title: Supplementary Material for: Intracellular Signaling Pathways Regulate Hormone-Dependent Kallikrein Gene Expression

description: <i>Objectives:</i> Our aim was to examine how certain signal transduction pathways influence the regulation of hormone-dependent kallikrein <i>(KLK) </i>gene expression in androgen-sensitive breast cancer cell lines. <i>Methods:</i> We used the breast cancer cell lines T47D and BT474, treated with steroid hormones or various pathway inhibitors. KLKs were quantified by ELISA. RT-PCR, Western blots and immunoprecipitations were used to assess transcript and protein levels. <i>Results:</i><i>PSA, KLK10, KLK11, KLK13</i> and <i>KLK14</i> are upregulated upon androgen stimulation in the T47D cell line. The expression of <i>PSA, KLK10 </i>and <i>KLK11 </i>was repressed by the MEK1/2 inhibitor U0126 and the PI3K inhibitor Wortmannin in the presence of the hormone, thus implicating the RAS/MEK/ERK and PI3K/AKT signaling pathways in regulating hormone-dependent <i>KLK</i> gene activation. Analysis of inhibitor-treated cells revealed changes in c-MYC expression with a pattern parallel to <i>KLK</i> gene expression. Chromatin immunoprecipitations identified androgen-dependent recruitment of specific transcription factors to the KLK proximal promoters, including c-MYC binding to <i>PSA</i> and <i>KLK11</i>. <i>Conclusion:</i> The hormone-specific upregulation of <i>PSA, KLK10</i> and <i>KLK11</i> in the breast cancer cell line T47D is dependent on major intracellular signaling pathways. This work provides a new dimension to the regulation of these cancer-related genes and the potential for new therapeutic targeting strategies.
DOI: 10.6084/m9.figshare.5419216.v1
title: Painters network

description: Data associated with paper: "Community detection with metadata in a network of influence between painters"
DOI: 10.6084/m9.figshare.5419216.v2
title: Painters network

description: Data associated with paper: "Community detection with metadata in a network of influence between painters"
DOI: 10.6084/m9.figshare.5419216.v3
title: Painters network

description: Data associated with paper: "Community detection with metadata in a network of influence between painters"
DOI: 10.6084/m9.figshare.5419102
title: Assessments for Measuring Young Children's Long-Term Relationships with Social Robots

description: Social robots are being increasingly developed for long-term interactions with children. However, there are few validated assessments for measuring young children's relationships with social robots. We provide several social/relational assessments for measuring young children's relationships with social robots. <br>These assessments were pilot-tested in the spring of 2017. The following paper presents the results of the pilot study for the Inclusion of Other in Self (IOS) task, the Social-Relational Interview, the Narrative Description task, and the Targeted Self-disclosure task with children aged 4-7 years. The results showed that children could appropriately respond to these assessments and that they had high internal reliability. You are free to use or adapt these assessments. If you do, please cite the following paper:Kory Westlund, J. M., Park, H., Williams, R., & Breazeal, C. (2018). <strong>Measuring Young Children's Long-term Relationships with Social Robots. </strong> <em>Proceedings of the 17th ACM Interaction Design and Children Conference (IDC)</em> ACM: New York, NY.
DOI: 10.17028/rd.lboro.5418961
title: Systematic Literature Review for "Design Language" 1990-2015

description: Systematic Literature Review using Elsevier Scopus and Design and Applied Arts Index (DAAI) databases for search terms related to 'Design Language' within the context of a brand's product portfolio.