cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8304899
title: GPUB

description: The German Public Building Section Dataset contains multi-modal datasources (RGB,IR,DSM) along with single roof-level annotations of buildings.
DOI: 10.6084/m9.figshare.24064737
title: Data from: Plantation clear-fell patches benefit heathland arthropods

description: Spiders and carabid beetles recorded by pitfall trapping in heathland and plantation forests in Eastern England, UK in 2009. The dataset contains the abundance of each species recorded, conservation status in the UK (S41=Section 41 priority species, NT=Near Threatened, NR=Nationally Rare, NS=Nationally Scarce), as well as habitat associations.
DOI: 10.5281/zenodo.8300661
title: ood-adv-rob_cifar10_Linf_models_01

description: Pre-trained CIFAR-10 models with one of the adversarial training methods (Linf).
DOI: 10.5281/zenodo.8300660
title: ood-adv-rob_cifar10_Linf_models_01

description: Pre-trained CIFAR-10 models with one of the adversarial training methods (Linf).
DOI: 10.6084/m9.figshare.24064014
title: Genome sequences and gene anntation of Quercus dentata <i>Quercus variabilis</i>

description: We present a high-quality chromosomal genome assembly for <i>Quercus variabilis</i> with length of 791,89 Mb and 54,606 predicted genes. Comparative analysis of protein sequences of <i>Q. variabilis</i> with 11 other species revealed that specific and expanded gene families were significantly enriched in the "fatty acid biosynthesis" pathway in <i>Q. variabilis</i>, which may contribute to the formation of its unique cork.
DOI: 10.5281/zenodo.8304929
title: A revision of Coccothrinax, Hemithrinax, Leucothrinax, Thrinax, and Zombia (Arecaceae)

description: This Excel database is part of a publication: A revision of Coccothrinax, Hemithrinax, Leucothrinax, Thrinax, and Zombia (Arecaceae)
DOI: 10.5281/zenodo.8304928
title: A revision of Coccothrinax, Hemithrinax, Leucothrinax, Thrinax, and Zombia (Arecaceae)

description: This Excel database is part of a publication: A revision of Coccothrinax, Hemithrinax, Leucothrinax, Thrinax, and Zombia (Arecaceae)
DOI: 10.5281/zenodo.8301212
title: Impacts of grid-based green hydrogen production on redispatch emissions and costs

description: Input networks and results data of my master thesis project conducted at DTU in collaboration with CSEI.
DOI: 10.5281/zenodo.8301213
title: Impacts of grid-based green hydrogen production on redispatch emissions and costs

description: Input networks and results data of my master thesis project conducted at DTU in collaboration with CSEI.
DOI: 10.6084/m9.figshare.24039042
title: Motion-corrected calcium image files

description: Processed images from "Raw image files". For each raw image file, channel 2 (the GCaMP emission channel) was extracted and motion-corrected using the normcorre image registration pipeline (https://github.com/flatironinstitute/NoRMCorre). These files can be loaded into suite2p (https://www.suite2p.org/) for automatic cell segmentation, fluorescence extraction, and spike inference. Full details as to how these files were analyzed are available here: https://github.com/sn-lab/MouseGoggles/tree/main/Publication
DOI: 10.6084/m9.figshare.24039042.v1
title: Motion-corrected calcium image files

description: Processed images from "Raw image files". For each raw image file, channel 2 (the GCaMP emission channel) was extracted and motion-corrected using the normcorre image registration pipeline (https://github.com/flatironinstitute/NoRMCorre). These files can be loaded into suite2p (https://www.suite2p.org/) for automatic cell segmentation, fluorescence extraction, and spike inference. Full details as to how these files were analyzed are available here: https://github.com/sn-lab/MouseGoggles/tree/main/Publication
DOI: 10.6084/m9.figshare.19723102
title: Original data table-Trans-generational plasticity.xlsx

description: This data is the raw data describing the phenotypic plasticity of the <em><strong>Xanthium strumarium</strong></em> , including Plant height， Crown width ， Base diameter ， Total biomass ， Root to crown ratio ， Fresh to dry ratio ， Stem-leaf ratio ， Reproductive partitioning and Nutrient partitioning .
DOI: 10.6084/m9.figshare.24032796.v1
title: Supplementary Material for: Validation of an automated speech analysis of cognitive tasks within a semi-automated phone assessment

description: Introduction. We studied the accuracy of the automatic speech recognition (ASR) software by comparing ASR scores with manual scores from a Verbal Learning Test (VLT) and a Semantic Verbal Fluency task (SVF) in a semi-automated phone assessment in a memory clinic population. Furthermore, we examined the differentiating value of these tests between participants with Subjective Cognitive Decline (SCD) and Mild Cognitive Impairment (MCI). We also investigated whether the automatically calculated speech and linguistic features had an additional value compared to the commonly used total scores in a semi-automated phone assessment. Methods. We included 94 participants from the memory clinic of the Maastricht University Medical Center+ (SCD N=56 and MCI N=38). The test leader guided the participant through a semi-automated phone assessment. The VLT and SVF were audio recorded and processed via a mobile application. The recall count and speech and linguistic features were automatically extracted. The diagnostic groups were classified by training machine learning classifiers to differentiate SCD and MCI participants. Results. The intraclass correlation for inter-rater reliability between the manual and the ASR total word count was 0.89 (95% CI 0.09-0.97) for the VLT immediate recall, 0.94 (95% CI 0.68-0.98) for the VLT delayed recall, and 0.93 (95% CI 0.56-0.97) for the SVF. The full model including the total word count and speech and linguistic features had an Area Under the Curve of 0.81 and 0.77 for the VLT immediate and delayed recall, respectively, and 0.61 for the SVF. Conclusion. There was a high agreement between the ASR and manual scores, keeping the broad confidence intervals in mind. The phone based VLT was able to differentiate between SCD and MCI and can have opportunities for clinical trial screening
DOI: 10.6084/m9.figshare.23834703.v1
title: Supplementary Material for: THE MANAGEMENT OF ACARDIAC TWINNING - TRAP SEQUENCE: AN INTERNATIONAL SURVEY

description: Introduction: The optimal approach and therapy method for the acardiac twin with a reverse arterial perfusion sequence has not yet been established. The aim of this study is to determine the clinical practice patterns amongst international fetal therapy units in their management of these cases. Methods: A survey was sent to fetal centers across the world via email between December 2020 and December 2021. Results: Responses were obtained from 77% contacted centers. The most frequent ultrasound variables used in the evaluation of TRAP sequence include echocardiographic assessment of the pump twin and umbilical artery Doppler waveforms in the acardiac and pump twins, in 90% and 80% of the centers respectively. Most centers in Europe and Latin America propose an in-utero intervention in all cases. Most centers in Europe and Latin America prefer interstitial laser ablation, whereas radiofrequency ablation is preferred in North America. The earliest gestational age for an intervention is on mean 13 weeks in Europe, which is earlier than the other geographic areas (p = 0.001). Conclusions: Most centers agreed that antenatal evaluation should include echocardiography along with the UA Doppler waveform measurements, and the most frequently used interventions were interstitial laser ablation or RFA at a median between 14 to 26 weeks.
DOI: 10.5281/zenodo.7965677
title: Data for: Microstructure evolution and texture development during production of homogeneous fine-grained aluminum wire by friction extrusion

description: This dataset contains the data for paper “Microstructure evolution and texture development during production of homogeneous fine-grained aluminum wire by friction extrusion” published in Materials Characterization. Abstract: This study aims to understand the microstructure evolution and texture development during friction extrusion of aluminium alloys, focusing on AA7075 as exemplary alloy system. Electron backscatter diffraction technique has been employed to obtain crystallographic data from various regions in front of the die and in the wire. It can be deduced that the combination of continuous dynamic recrystallization and geometric dynamic recrystallization mainly govern the formation of a fine-grained structure, however discontinuous dynamic recrystallization may also play a role at high temperature. The global shear deformation during the process was characterized as a simple shear deformation with dominant \(B/\overline{B}\) simple shear texture components. The material flow is mainly driven by the in-plane shear strain and the extrusion-induced shear strain that are determined by die rotational speed and extrusion force, respectively. The in-plane shear strain strongly affects the formation of a homogeneous fine-grained microstructure in the aluminum wire. In this regard, a novel material flow model for friction extrusion has been proposed.
DOI: 10.5281/zenodo.7965676
title: Data for: Microstructure evolution and texture development during production of homogeneous fine-grained aluminum wire by friction extrusion

description: This dataset contains the data for paper “Microstructure evolution and texture development during production of homogeneous fine-grained aluminum wire by friction extrusion” published in Materials Characterization. Abstract: This study aims to understand the microstructure evolution and texture development during friction extrusion of aluminium alloys, focusing on AA7075 as exemplary alloy system. Electron backscatter diffraction technique has been employed to obtain crystallographic data from various regions in front of the die and in the wire. It can be deduced that the combination of continuous dynamic recrystallization and geometric dynamic recrystallization mainly govern the formation of a fine-grained structure, however discontinuous dynamic recrystallization may also play a role at high temperature. The global shear deformation during the process was characterized as a simple shear deformation with dominant \(B/\overline{B}\) simple shear texture components. The material flow is mainly driven by the in-plane shear strain and the extrusion-induced shear strain that are determined by die rotational speed and extrusion force, respectively. The in-plane shear strain strongly affects the formation of a homogeneous fine-grained microstructure in the aluminum wire. In this regard, a novel material flow model for friction extrusion has been proposed.
DOI: 10.48366/r609226
title: A Catalog of EleutherAI's Large Language Models

description: Starting in early 2022, EleutherAI released open-sourced high-performing models built after GPT-2/GPT-3 with an intent to open-source strong LLMs. With its Pythia series, its initiative to open-source LLMs continues, which now extends into releasing the largest collection of 16 total open-source models at different parameter sizes to study the effects of scale on LLMs. This comparison showcases EleutherAI's models released so far in terms of their salient properties.
DOI: 10.20394/16b6mb29
title: iMCD household survey and travel diary

description: Part of the overall collection is the iMCD Household Survey, which is available in anonymised form. The iMCD Household Survey interviewed a representative sample of adults (2095 people from 1508 household) in the Glasgow and Clyde Valley Planning area between April and November 2015. The Survey has a unique combination of questions covering detailed information about each household and their attitudes and behaviours to transport, education, computer and mobile phone usage, and sustainability. These data would be of interest to planners, researchers or individuals wanting to gain a better understanding of these topics and their interactions.
DOI: 10.5281/zenodo.8266233
title: A Genetic Algorithm Optimization for Fracture Length to Prevent Subsurface Interference during drilled cuttings reinjection Files

description: The files associated with the publication.
DOI: 10.5281/zenodo.8266232
title: A Genetic Algorithm Optimization for Fracture Length to Prevent Subsurface Interference during drilled cuttings reinjection Files

description: The files associated with the publication.
DOI: 10.34740/kaggle/dsv/6394246
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.5281/zenodo.6539516
title: Supplementary data files for Manzano-Marín et. al. 2023 "Evolution of an alternative genetic code in the Providencia symbiont of the haematophagous leech Haementeria acuecueyetzin"

description: The data set consists of siz folders: <strong>1)</strong> "genome_data": GenBank-formatted annotation files for newly sequenced <em>Providencia siddallii</em> endosymbionts. <strong>2)</strong> "orthoMCL_data": Flat-text output files from the OrthoMCL pipeline. <strong>3)</strong> "phylongey": MrBayes run files for <em>Providencia</em> spp. Bayesian phylogenetic inference. <strong>4)</strong> "UGA_proteins_and_genes": FASTA-formatted alignments of UGA-containing protein-coding gene sequences from figure 3 and table 3. <strong>5)</strong> "RepeatModeler_Prsiddallii": Log files for RepeatModeler runs of <em>P. siddallii</em> genomes. <strong>6)</strong> "checkM2_Psiddallii": checkM2 input and output files for <em>P. siddallii</em> protein sets. <strong>7)</strong> "breseq_runs": breseq output folders for variant calling on newly assembled genomes. <strong>8)</strong> "GSAlign_Prsiddallii_GTOCOR": output files of variant calling using GSAlign between <em>P. siddallii</em> strain GTOCOR1 (sampled in 2015 and reported in Manzano-Marín <em>et. al.</em> 2015 <em>GBE</em>) and GTOCOR2 (sampled in 2019 and reported in the associated work).
description: Version 1.2.0 added the "breseq_runs" and "GSAlign_Prsiddallii_GTOCOR" folders, following reviewer's comments of the second version of the manuscript.
DOI: 10.5281/zenodo.6539517
title: Supplementary data files for Manzano-Marín et. al. 2023 "Evolution of an alternative genetic code in the Providencia symbiont of the haematophagous leech Haementeria acuecueyetzin"

description: The data set consists of three folders: <strong>1)</strong> "genome_data": GenBank-formatted annotation files for newly sequenced <em>Providencia siddallii</em> endosymbionts. <strong>2)</strong> "orthoMCL_data": Flat-text output files from the OrthoMCL pipeline. <strong>3)</strong> "UGA_proteins_and_genes": FASTA-formatted alignments of UGA-containing protein-coding gene sequences from figure 3 and table 3.
DOI: 10.5281/zenodo.8021899
title: Supplementary data files for Manzano-Marín et. al. 2023 "Evolution of an alternative genetic code in the Providencia symbiont of the haematophagous leech Haementeria acuecueyetzin"

description: The data set consists of siz folders: <strong>1)</strong> "genome_data": GenBank-formatted annotation files for newly sequenced <em>Providencia siddallii</em> endosymbionts. <strong>2)</strong> "orthoMCL_data": Flat-text output files from the OrthoMCL pipeline. <strong>3)</strong> "phylongey": MrBayes run files for <em>Providencia</em> spp. Bayesian phylogenetic inference. <strong>4)</strong> "UGA_proteins_and_genes": FASTA-formatted alignments of UGA-containing protein-coding gene sequences from figure 3 and table 3. <strong>5)</strong> "RepeatModeler_Prsiddallii": FLog files for RepeatModeler runs of <em>P. siddallii</em> genomes. <strong>6)</strong> "checkM2_Psiddallii": checkM2 input and output files for <em>P. siddallii</em> protein sets.
DOI: 10.5281/zenodo.8305003
title: Supplementary data files for Manzano-Marín et. al. 2023 "Evolution of an alternative genetic code in the Providencia symbiont of the haematophagous leech Haementeria acuecueyetzin"

description: The data set consists of siz folders: <strong>1)</strong> "genome_data": GenBank-formatted annotation files for newly sequenced <em>Providencia siddallii</em> endosymbionts. <strong>2)</strong> "orthoMCL_data": Flat-text output files from the OrthoMCL pipeline. <strong>3)</strong> "phylongey": MrBayes run files for <em>Providencia</em> spp. Bayesian phylogenetic inference. <strong>4)</strong> "UGA_proteins_and_genes": FASTA-formatted alignments of UGA-containing protein-coding gene sequences from figure 3 and table 3. <strong>5)</strong> "RepeatModeler_Prsiddallii": Log files for RepeatModeler runs of <em>P. siddallii</em> genomes. <strong>6)</strong> "checkM2_Psiddallii": checkM2 input and output files for <em>P. siddallii</em> protein sets. <strong>7)</strong> "breseq_runs": breseq output folders for variant calling on newly assembled genomes. <strong>8)</strong> "GSAlign_Prsiddallii_GTOCOR": output files of variant calling using GSAlign between <em>P. siddallii</em> strain GTOCOR1 (sampled in 2015 and reported in Manzano-Marín <em>et. al.</em> 2015 <em>GBE</em>) and GTOCOR2 (sampled in 2019 and reported in the associated work).
description: Version 1.2.0 added the "breseq_runs" and "GSAlign_Prsiddallii_GTOCOR" folders, following reviewer's comments of the second version of the manuscript.
DOI: 10.4121/d3455b3c-54d8-4ef8-8501-a70936a51dad.v1
title: Supplementary Information: RNA-Seq analysis of Brassicaceae species under different irradiances

description: This package contains supplementary information supporting conclusions from an RNA-Seq experiment conducted on Brassicaceae species grown under different irradiances. In this study, co-authors and I aimed to comprehend the genetic and physiological underpinnings of photosynthetic light-use efficiency (LUE) under high irradiance conditions, focusing on the plant species <em>Hirschfeldia incana</em>. We performed a comparison of the transcriptional signature associated to very high, "supernatural" irradiance in <em>H. incana </em>with three other Brassicaceae plants (<em>Arabidopsis thaliana</em>, <em>Brassica rapa</em>, and <em>Brassica nigra</em>), which previously demonstrated lower photosynthetic LUE. By utilizing a panproteome, we assessed gene expression patterns in response to high irradiance across the four species. Our findings reveal that all species actively regulate genes linked to photosynthesis. Analyzing genes associated with three key photosynthetic pathways, we observed a consistent pattern of reduced gene expression under high irradiance conditions. Notably, specific genes exhibited differential expression exclusively in <em>H. incana</em>, while in other instances, transcript abundance was consistently higher in<em> H. incana </em>regardless of light intensity. In conclusion, the study this software supports presents the first comparative transcriptome analysis of plant species grown entirely under prolonged high irradiance, rather than just briefly exposed to it. We demonstrate that, in contrast to other Brassicaceae species, <em>H. incana </em>subjected to intense irradiance displays enhanced gene expression related to photosynthesis through distinct mechanisms: canonical differential expression, inherent elevated expression of single-copy genes, and cumulative elevated expression via simultaneous expression of multiple gene copies. This research establishes a crucial groundwork for future endeavors aimed at comprehending elevated photosynthetic light-use efficiency and ultimately achieving highly effective photosynthesis in agricultural crops.
DOI: 10.6084/m9.figshare.24064950
title: Sanskrit Synonyms Evaluation

description: Sanskrit Synonyms Evaluation
DOI: 10.6084/m9.figshare.24064950.v1
title: Sanskrit Synonyms Evaluation

description: Sanskrit Synonyms Evaluation
DOI: 10.5281/zenodo.7794495
title: The advantage of being a synesthete: The behavioral benefits of ticker-tape synesthesia

description: Ticker-tape synesthetes and matched controls were tested on 5 behavioral experiments. Here are included .csv and .txt summarizing their results.
DOI: 10.5281/zenodo.7794494
title: The advantage of being a synesthete: The behavioral benefits of ticker-tape synesthesia

description: Ticker-tape synesthetes and matched controls were tested on 5 behavioral experiments. Here are included .csv and .txt summarizing their results.
DOI: 10.5281/zenodo.8251710
title: The advantage of being a synesthete: The behavioral benefits of ticker-tape synesthesia

description: Ticker-tape synesthetes and matched controls were tested on 5 behavioral experiments. Here are included .csv and .txt summarizing their results.
DOI: 10.5281/zenodo.8305023
title: The advantage of being a synesthete: The behavioral benefits of ticker-tape synesthesia

description: Ticker-tape synesthetes and matched controls were tested on 5 behavioral experiments. Here are included .csv and .txt summarizing their results.
DOI: 10.25919/s1dd-k106
title: Parkes observations for project P1168 semester 2023APRS_10

description: We discovered seven pulsars in the globular cluster Terzan 1 with the Green Bank Telescope (GBT), the first pulsars to be found in this cluster. The discoveries include five fully-recycled millisecond pulsars (MSPs) with spin periods between 3 and 6 ms, an 11-ms MSP, and a pulsar with an unusually long spin period of 134 ms. Our preliminary timing suggested that all seven are likely isolated pulsars, consistent with Terzan 1 being a core-collapsed globular cluster. The 134-ms pulsar is an especially interesting discovery in the context of pulsar formation via electron-capture rather than core-collapse supernovae. We observed Terzan 1 at Parkes with the UWL receiver in 2022OCT to test whether the pulsars could be detected and thus timed at Parkes. All seven pulsars are significantly detected in both observations. We propose a year-long timing campaign with Parkes/UWL to obtain phase-connected timing solutions for these pulsars; we request continuing status to continue these timing observations through 2023OCT. To refine the timing parameters and probe the pulsars' acceleration in the cluster potential, we will extend phase connection beyond one year using the 2022OCT observations, and we will attempt to phase connect back to the original GBT discovery pointings. In addition to timing, we will probe the pulsars' polarization properties and the Galactic magnetic field in the direction of Terzan 1; and the proposed observations will also be searched for new pulsars that may have been missed in previous observations.
DOI: 10.5517/ccdc.csd.cc2fthg7
title: CCDC 2258829: Experimental Crystal Structure Determination

description: Related Article: Toshio Nishino, Masafumi Fukumura, Shohei Katao, Kazuma Yasuhara, Gwénaël Rapenne|2023|Dalton Trans.|52|11797|doi:10.1039/D3DT02443A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ghfxb
title: CCDC 2278962: Experimental Crystal Structure Determination

description: Related Article: Judit E. Šponer, Jiří Šponer, Jakub Výravský, Roman Matyášek, Aleš Kovařík, Wojciech Dudziak, Katarzyna Ślepokura|2023|iScience|26|107600|doi:10.1016/j.isci.2023.107600
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.