cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13270922.v1
title: Contribution of new particle formation to cloud condensation nuclei concentrations at the top of Wudang Mountains in central China

description: This is a data set from a field campaign carried out during May and June at the top of Wudang Mountains in Hubei, central China. It includes particle number size distribution (PNSD), chemical composition, CCN concentration, wind direct, ozone concentration and sulfuric acid concentrations for June 4, 7, 11 on which new particle formation occurred.
DOI: 10.6084/m9.figshare.14378495.v1
title: 1111

description: 111111
DOI: 10.6084/m9.figshare.14378495
title: 1111

description: 111111
DOI: 10.15468/k94yg8
title: Description of a new species of the genus Nikkoaspis Kuwana, 1928 (Hemiptera Coccomorpha: Diaspididae) from China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Tian, Feng, Zheng, Xinyi, Xing, Jichun (2021): Description of a new species of the genus Nikkoaspis Kuwana, 1928 (Hemiptera Coccomorpha: Diaspididae) from China. Zootaxa 4949 (2): 363-370, DOI: https://doi.org/10.11646/zootaxa.4949.2.9
DOI: 10.25919/8s64-p849
title: Parkes observations for project P595 semester 2020OCTS_19

description: We propose to continue the PULSE@Parkes project in which high school students from Australia and around the World use the Parkes radio telescope in a remote observing model to observe and analyse pulsar data. The data from some PULSE@Parkes observations are used to support the FERMI Gamma ray mission, other observations supplement the P456 Pulsar Timing Array project and the remainder were chosen in order to make a detailed analysis of pulsar timing irregularities and intermittency.
DOI: 10.25386/genetics.14132609
title: Supplemental Material for Ollodart et al., 2021

description: Despite the fundamental importance of mutation rate as a driving force in evolution and disease risk, common methods to assay mutation rate are time consuming and tedious. Established methods such as fluctuation tests and mutation accumulation experiments are low-throughput and often require significant optimization to ensure accuracy. We established a new method to determine the mutation rate of many strains simultaneously by tracking mutation events in a chemostat continuous culture device and applying deep sequencing to link mutations to alleles of a DNA-repair gene. We applied this method to assay the mutation rate of hundreds of <i>Saccharomyces cerevisiae</i> strains carrying mutations in the gene encoding Msh2, a DNA repair enzyme in the mismatch repair pathway (MMR). Loss-of-function (LOF) mutations in <i>MSH2 </i>are associated with hereditary non-polyposis colorectal cancer (HNPCC), an inherited disorder that increases risk for many different cancers. However, the vast majority of <i>MSH2</i> variants found in human populations have insufficient evidence to be classified as either pathogenic or benign. We first benchmarked our method against Luria-Delbrück fluctuation tests using a collection of published <i>MSH2 </i>missense variants. Our pooled screen successfully identified previously characterized non-functional alleles as high mutators. We then created an additional 185 human missense variants in the yeast ortholog, including both characterized and uncharacterized alleles curated from ClinVar and other clinical testing data. In a set of alleles of known pathogenicity, our assay recapitulated ClinVar’s classification; we then estimated pathogenicity for 157 variants classified as uncertain or conflicting reports of significance. This method is capable of studying the mutation rate of many microbial species and can be applied to problems ranging from the generation of high-fidelity polymerases to measuring the frequency of antibiotic resistance emergence.
DOI: 10.25386/genetics.14132609.v1
title: Supplemental Material for Ollodart et al., 2021

description: Despite the fundamental importance of mutation rate as a driving force in evolution and disease risk, common methods to assay mutation rate are time consuming and tedious. Established methods such as fluctuation tests and mutation accumulation experiments are low-throughput and often require significant optimization to ensure accuracy. We established a new method to determine the mutation rate of many strains simultaneously by tracking mutation events in a chemostat continuous culture device and applying deep sequencing to link mutations to alleles of a DNA-repair gene. We applied this method to assay the mutation rate of hundreds of <i>Saccharomyces cerevisiae</i> strains carrying mutations in the gene encoding Msh2, a DNA repair enzyme in the mismatch repair pathway (MMR). Loss-of-function (LOF) mutations in <i>MSH2 </i>are associated with hereditary non-polyposis colorectal cancer (HNPCC), an inherited disorder that increases risk for many different cancers. However, the vast majority of <i>MSH2</i> variants found in human populations have insufficient evidence to be classified as either pathogenic or benign. We first benchmarked our method against Luria-Delbrück fluctuation tests using a collection of published <i>MSH2 </i>missense variants. Our pooled screen successfully identified previously characterized non-functional alleles as high mutators. We then created an additional 185 human missense variants in the yeast ortholog, including both characterized and uncharacterized alleles curated from ClinVar and other clinical testing data. In a set of alleles of known pathogenicity, our assay recapitulated ClinVar’s classification; we then estimated pathogenicity for 157 variants classified as uncertain or conflicting reports of significance. This method is capable of studying the mutation rate of many microbial species and can be applied to problems ranging from the generation of high-fidelity polymerases to measuring the frequency of antibiotic resistance emergence.
DOI: 10.6084/m9.figshare.14378477
title: Attacks Against Missions Database

description: The Attacks Against Missions Database contains data about attacks against diplomatic and consular representations which occurred between 1945 and 2020.
DOI: 10.6084/m9.figshare.14213204
title: Invalid Dataset

description: Please donot use this dataset as this has been invalid.
DOI: 10.6084/m9.figshare.14213204.v2
title: Invalid Dataset

description: Please donot use this dataset as this has been invalid.
DOI: 10.6084/m9.figshare.14213204.v1
title: SAR 40 Dataset

description: This dataset contains EEG recording of students while performing different types of tasks such as Stroop Color Word test, recognizing mirror image symmetry in images , and correctly evaluating arithmetic problems within a specific time duration. The age of the students ranges from 18-25 years with a mean age of 21.5 years. EEG data were recorded from 32-channels using Emotiv Epoc Flex gel kit at a sampling frequency of 128Hz. Three trials were recorded from an individual subject.
DOI: 10.26208/41rm-q220
title: Shale Network database – A snapshot of the Entire Shale Network database as of March 2021

description: This data set is a snapshot copy of the entire Shale Network database (https://doi.org/10.4211/his-data-shalenetwork) as of March 3rd, 2021. The Shale Network (http://www.shalenetwork.org/) is a project funded by the National Science Foundation to help scientists and other stakeholders store data for water resources that may be affected by gas exploitation in shale in the U.S.A. Our primary focus currently is the northeastern U.S.A. We want to enable the generation of knowledge from water chemistry and flow data collected in areas of extraction of natural gas. The Shale Network is working with the Consortium of Universities for the Advancement of Hydrologic Sciences, Inc. (CUAHSI) to create this database (http://data.cuahsi.org/). Our goal is to find, organize, and upload data for water resources for online publication with attribution. The Shale Network is seeking organizations engaged in water quality monitoring or research to join our effort. Please contact us if you wish to learn more about becoming part of the Shale Network.
DOI: 10.5281/zenodo.4666540
title: Lista de las canciones mas oídas entre los años 2009 y 2020

description: Es una lista de las canciones mas oídas entre los años 2009 y 2020 esta estructurado por año, ranking dentro del año, nombre de canción, interprete y url para escuchar dicha canción
DOI: 10.5281/zenodo.4666539
title: Lista de las canciones mas oídas entre los años 2009 y 2020

description: Es una lista de las canciones mas oídas entre los años 2009 y 2020 esta estructurado por año, ranking dentro del año, nombre de canción, interprete y url para escuchar dicha canción
DOI: 10.5519/qd.wnaw4ffl
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (421 records)
DOI: 10.5281/zenodo.4664595
title: Datasets for "The climatic debt is growing in the understory of temperate forests: stand characteristics matter"

description: Datasets for the paper <strong>Richard, B.</strong> et al. The climatic debt is growing in the understory of temperate forests: stand characteristics matter. <em>Global Ecology and Biogeography</em>. The files provided here contain the data for CTI, the contributing factors in lags, the macroclimate temperatures, and the Species Indicator Values for temperature used in the analyses. A .rmd and .html files are provided and contained all the R scripts in Rmarkdown format to produce the main results and figures in R (R Core Team 2019). The .html file can be directly generated from the .rmd file in RStudio.
DOI: 10.5281/zenodo.4664594
title: Datasets for "The climatic debt is growing in the understory of temperate forests: stand characteristics matter"

description: Datasets for the paper <strong>Richard, B.</strong> et al. The climatic debt is growing in the understory of temperate forests: stand characteristics matter. <em>Global Ecology and Biogeography</em>. The files provided here contain the data for CTI, the contributing factors in lags, the macroclimate temperatures, and the Species Indicator Values for temperature used in the analyses. A .rmd and .html files are provided and contained all the R scripts in Rmarkdown format to produce the main results and figures in R (R Core Team 2019). The .html file can be directly generated from the .rmd file in RStudio.
DOI: 10.6084/m9.figshare.12955118
title: The results of post-hoc analyses for coordination of hip and spine to maintain equilibrium in unstable sitting

description: Supplemental Tables S1-S12 show the detailed results of post-hoc analyses for coordination of hip and spine to maintain equilibrium in unstable sitting.<br>
DOI: 10.6084/m9.figshare.12955118.v1
title: The results of post-hoc analyses for coordination of hip and spine to maintain equilibrium in unstable sitting

description: Supplemental Tables S1-S12 show the detailed results of post-hoc analyses for coordination of hip and spine to maintain equilibrium in unstable sitting.<br>
DOI: 10.15131/shef.data.13140086.v2
title: Synaesthesia for reading written musical keys

description: This study is the first empirical demonstration of synaesthesia for reading written musical keys. Nine music-colour synaesthetes and nine controls took part in six experiments that aimed to confirm the authenticity of synaesthesia for reading musical keys, and to demonstrate that this type of synaesthesia is linked to conceptual rather than to purely perceptual processing of the inducing stimulus. First, the existence of a synaesthetic association with written musical keys was validated in an objective manner by employing two measures of consistency as diagnostic criteria. Second, the automaticity of the synaesthetes’ responses was tested by demonstrating the presence of interference when naming synaesthetic colours for incongruent pairings of colour and musical key. To test whether a change in form altered the concept of the musical key, stimuli were randomly presented in three separate modes (words, treble clef or bass clef). Last, the congruency effect on reaction times was tested when exposure to the stimulus was significantly curtailed; separate groups of synaesthetes and controls were tested as the explicit naming of synaesthetic colour was not required.<b> </b>Findings showed synaesthesia for written musical keys to be a genuine form of synaesthesia elicited from the concept, or the idea, of the key. The software package SPSS Statistics V25 was used to carry out the analysis of the data collected which has been deposited here.
DOI: 10.5517/ccdc.csd.cc225bby
title: CCDC 1911749: Experimental Crystal Structure Determination

description: Related Article: Shengnan Zhang|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc225bd0
title: CCDC 1911751: Experimental Crystal Structure Determination

description: Related Article: Shengnan Zhang|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc225bg2
title: CCDC 1911753: Experimental Crystal Structure Determination

description: Related Article: Shengnan Zhang|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc265ndg
title: CCDC 2031225: Experimental Crystal Structure Determination

description: Related Article: Kesatebrhan Haile Asressu, Chieh-Kai Chan, Cheng-Chung Wang|2021|ACS Omega|6|7296|doi:10.1021/acsomega.0c05328
DOI: 10.5517/ccdc.csd.cc265npr
title: CCDC 2031234: Experimental Crystal Structure Determination

description: Related Article: Kesatebrhan Haile Asressu, Chieh-Kai Chan, Cheng-Chung Wang|2021|ACS Omega|6|7296|doi:10.1021/acsomega.0c05328
DOI: 10.5517/ccdc.csd.cc265ny0
title: CCDC 2031242: Experimental Crystal Structure Determination

description: Related Article: Kesatebrhan Haile Asressu, Chieh-Kai Chan, Cheng-Chung Wang|2021|ACS Omega|6|7296|doi:10.1021/acsomega.0c05328
DOI: 10.5517/ccdc.csd.cc265p14
title: CCDC 2031245: Experimental Crystal Structure Determination

description: Related Article: Kesatebrhan Haile Asressu, Chieh-Kai Chan, Cheng-Chung Wang|2021|ACS Omega|6|7296|doi:10.1021/acsomega.0c05328
DOI: 10.5517/ccdc.csd.cc265p25
title: CCDC 2031246: Experimental Crystal Structure Determination

description: Related Article: Kesatebrhan Haile Asressu, Chieh-Kai Chan, Cheng-Chung Wang|2021|ACS Omega|6|7296|doi:10.1021/acsomega.0c05328
DOI: 10.5517/ccdc.csd.cc26c47z
title: CCDC 2036490: Experimental Crystal Structure Determination

description: Related Article: Dinesh Paymode,  Indrajeet Sharma|2021|Eur.J.Org.Chem.|2021|2034|doi:10.1002/ejoc.202100186
DOI: 10.5517/ccdc.csd.cc26gtcw
title: CCDC 2040028: Experimental Crystal Structure Determination

description: Related Article: Rubén Prieto-Díaz|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc26pfmz
title: CCDC 2046391: Experimental Crystal Structure Determination

description: Related Article: chao wei|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc26qqb0
title: CCDC 2047622: Experimental Crystal Structure Determination

description: Related Article: Geoffrey S. Sinclair, Robert C. M. Claridge, Andrew J. Kukor, W. Scott Hopkins, Derek J. Schipper|2020|CSD Communication|||
description: Related Article: Geoffrey S. Sinclair, Robert C. M. Claridge, Andrew J. Kukor, W. Scott Hopkins, Derek J. Schipper|2021|Chemical Science|12|2304|doi:10.1039/D0SC06583H
DOI: 10.6084/m9.figshare.14374151
title: Perrig et al. 2021_Supporting Data

description: δ<sup>13</sup>C and δ<sup>15</sup>N isotopic ratios of individually identified molted feathers of adult Andean condors (<i>Vultur gryphus</i>) and their potential prey items in 6 sites of central Argentina. Further details of the data can be found in the associated publication: <br>Perrig et al. 2021. Limited sexual segregation in a dimorphic avian scavenger, the Andean condor. https://doi.org/10.1007/s00442-021-04909-8<br>
DOI: 10.5281/zenodo.4666862
title: Usefulness of the open data catalogue for the elaboration of a crime map: the case of Spain

description: This dataset contains data which, in terms of security, are provided by the open data catalogue of Spain, datos.gob.es, and which could bring together the information elements required for the creation of the intended cartographic resource.
DOI: 10.6084/m9.figshare.12851366.v1
title: Lysosomal degradation ensures accurate chromosomal segregation to prevent chromosomal instability

description: Lysosomes, as primary degradative organelles, are the endpoint of different converging pathways, including macroautophagy. To date, lysosome degradative function has been mainly studied in interphase cells, while their role during mitosis remains controversial. Mitosis dictates the faithful transmission of genetic material among generations, and perturbations of mitotic division lead to chromosomal instability, a hallmark of cancer. Heretofore, correct mitotic progression relies on the orchestrated degradation of mitotic factors, which was mainly attributed to ubiquitin-triggered proteasome-dependent degradation. Here, we show that mitotic transition also relies on lysosome-dependent degradation, as impairment of lysosomes increases mitotic timing and leads to mitotic errors, thus promoting chromosomal instability. Furthermore, we identified several putative lysosomal targets in mitotic cells. Among them, WAPL, a cohesin regulatory protein, emerged as a novel SQSTM1-interacting protein for targeted lysosomal degradation. Finally, we characterized an atypical nuclear phenotype, the toroidal nucleus, as a novel biomarker for genotoxic screenings. Our results establish lysosome-dependent degradation as an essential event to prevent chromosomal instability. <b>Abbreviations:</b> 3D: three-dimensional; APC/C: anaphase-promoting complex; ARL8B: ADP ribosylation factor like GTPase 8B; ATG: autophagy-related; BORC: BLOC-one-related complex; CDK: cyclin-dependent kinase; CENPE: centromere protein E; CIN: chromosomal instability; ConcA: concanamycin A; CQ: chloroquine; DAPI: 4,6-diamidino-2-penylinole; FTI: farnesyltransferase inhibitors; GFP: green fluorescent protein; H2B: histone 2B; KIF: kinesin family member; LAMP2: lysosomal associated membrane protein 2; MAP1LC3/LC3: microtubule associated protein 1 light chain 3; MEF: mouse embryonic fibroblast; MTOR: mechanistic target of rapamycin kinase; PDS5B: PDS5 cohesin associated factor B; SAC: spindle assembly checkpoint; PLEKHM2: pleckstrin homology and RUN domain containing M2; SQSTM1: sequestosome 1; TEM: transmission electron microscopy; ULK1: unc-51 like autophagy activating kinase 1; UPS: ubiquitin-proteasome system; v-ATPase: vacuolar-type H<sup>+</sup>-translocating ATPase; WAPL: WAPL cohesion release factor.
DOI: 10.6084/m9.figshare.12851366
title: Lysosomal degradation ensures accurate chromosomal segregation to prevent chromosomal instability

description: Lysosomes, as primary degradative organelles, are the endpoint of different converging pathways, including macroautophagy. To date, lysosome degradative function has been mainly studied in interphase cells, while their role during mitosis remains controversial. Mitosis dictates the faithful transmission of genetic material among generations, and perturbations of mitotic division lead to chromosomal instability, a hallmark of cancer. Heretofore, correct mitotic progression relies on the orchestrated degradation of mitotic factors, which was mainly attributed to ubiquitin-triggered proteasome-dependent degradation. Here, we show that mitotic transition also relies on lysosome-dependent degradation, as impairment of lysosomes increases mitotic timing and leads to mitotic errors, thus promoting chromosomal instability. Furthermore, we identified several putative lysosomal targets in mitotic cells. Among them, WAPL, a cohesin regulatory protein, emerged as a novel SQSTM1-interacting protein for targeted lysosomal degradation. Finally, we characterized an atypical nuclear phenotype, the toroidal nucleus, as a novel biomarker for genotoxic screenings. Our results establish lysosome-dependent degradation as an essential event to prevent chromosomal instability. <b>Abbreviations:</b> 3D: three-dimensional; APC/C: anaphase-promoting complex; ARL8B: ADP ribosylation factor like GTPase 8B; ATG: autophagy-related; BORC: BLOC-one-related complex; CDK: cyclin-dependent kinase; CENPE: centromere protein E; CIN: chromosomal instability; ConcA: concanamycin A; CQ: chloroquine; DAPI: 4,6-diamidino-2-penylinole; FTI: farnesyltransferase inhibitors; GFP: green fluorescent protein; H2B: histone 2B; KIF: kinesin family member; LAMP2: lysosomal associated membrane protein 2; MAP1LC3/LC3: microtubule associated protein 1 light chain 3; MEF: mouse embryonic fibroblast; MTOR: mechanistic target of rapamycin kinase; PDS5B: PDS5 cohesin associated factor B; SAC: spindle assembly checkpoint; PLEKHM2: pleckstrin homology and RUN domain containing M2; SQSTM1: sequestosome 1; TEM: transmission electron microscopy; ULK1: unc-51 like autophagy activating kinase 1; UPS: ubiquitin-proteasome system; v-ATPase: vacuolar-type H<sup>+</sup>-translocating ATPase; WAPL: WAPL cohesion release factor.
DOI: 10.6084/m9.figshare.11919576
title: The proppin Bcas3 and its interactor KinkyA localize to the early phagophore and regulate autophagy

description: To resolve the signaling mechanisms that mediate the starvation-induced processes of <i>Dictyostelium</i> sporulation and encystation, we performed insertional mutagenesis on cells harboring an mRFP-tagged spore gene. We isolated a mutant in <i>kinkyA</i> (<i>knkA</i>), a gene without known function, which formed fruiting bodies with a kinked stalk and lacking viable spores. Immunoprecipitation of lysates of KnkA-YFP-transformed <i>knkA<sup>−</sup></i> cells yielded a mammalian BCAS3 homolog as a KnkA interactor. <i>bcas3<sup>−</sup></i> phenocopied <i>knkA<sup>−</sup></i> and Bcas3 colocalized with KnkA to puncta. Bcas3 shares sequence similarity with proppins (beta-propellors that bind phosphoinositides). Mutation of 2 Bcas3 residues that are essential for PtdIns3P binding in proppins prevented Bcas3 binding to PtdIns3P as well as punctate Bcas3 and KnkA localization. KnkA puncta also colocalized with small but not large vesicles that contain the autophagy protein Atg8 and were contiguous with the endoplasmic reticulum. <i>knkA<sup>−</sup></i> and <i>bcas3<sup>−</sup></i> cells showed a pronounced decrease of RFP-GFP-Atg8 in neutral early autophagosomes, indicating that KnkA and Bcas3 are required for macroautophagy/autophagy. Knockouts in <i>atg7, atg5</i> or <i>atg9</i> substantiated this finding by showing similar sporulation defects as <i>knkA<sup>−</sup></i> and <i>bcas3<sup>−</sup></i>. Defective <i>Dictyostelium</i> sporulation is evidently a useful diagnostic tool for the discovery of novel autophagy genes. <b>Abbreviations:</b> Atg: Autophagy-related; BCAS3: BCAS3 microtubule associated cell migration factor; cAMP: 3ʹ,5ʹ-cyclic adenosine monophosphate; ER: endoplasmic reticulum; GFP: green fluorescent protein; PAS: phagophore assembly site; PRKA/PKA: protein kinase cAMP-dependent; Proppin: beta‐propellers that bind phosphoinositides; PtdIns3P: phosphatidylinositol 3-phosphate; REMI: restriction enzyme-mediated insertional mutagenesis; RFP: red fluorescent protein; RT-qPCR: reverse transcriptase - quantitative polymerase chain reaction; WIPI: WD repeat domain, phosphoinositide interacting; YFP: yellow fluorescent protein