cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13824572
title: Mapping Soil Organic Carbon in the World's Largest Arid Mangrove Forest (Indus Delta, Pakistan): A Multi-Sensor Remote Sensing and Machine Learning Approach

description: Mangrove forests play a crucial role in carbon sequestration, especially in arid regions where their ability to store carbon in soil is vital for mitigating climate change. The Indus Delta in Pakistan, the world’s largest arid mangrove forest system, lacks spatially explicit data on Soil Organic Carbon (SOC) despite its importance for conservation and carbon budgeting. This study aims to establish a baseline SOC map 2020 at 10 m spatial resolution using Sentinel-1 (Synthetic Aperture Radar) and Sentinel-2 (MultiSpectral Instrument) satellite imagery, integrated with in-situ soil sampling. SOC predictions were made using a Classification and Regression Tree (CART) machine learning model within the Google Earth Engine platform, leveraging 40 predictor variables, including spectral bands and derived indices. A total of 53 topsoil (0-10 cm) samples were collected in February 2020 across the Indus Delta, and SOC was analyzed using the Walkley-Black method. The results showed an average SOC value of 65.88 Mg C ha⁻¹ with substantial spatial variability, ranging from 15.06 Mg C ha⁻¹ to 138.03 Mg C ha⁻¹ with a total of 0.91 Pg C. The CART model demonstrated high accuracy, with an R² of 0.95 and an RMSE of 9.18 Mg C ha⁻¹. However, the region faces challenges such as seawater intrusion and salinity, which threaten its ability to sequester carbon. With the first high-resolution SOC map for the Indus Delta, this study provides valuable insights for ecosystem management, conservation planning, and carbon budgeting. These findings of this study have the potential to significantly influence initiatives like REDD+ and Blue Carbon projects, which aim to enhance carbon sequestration while addressing the ecological challenges facing Pakistan’s mangroves
DOI: 10.15468/dl.qf2ffn
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.29_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ligularia virgaurea (Maxim.) Mattf. ex Rehder & Kobuski"
 ]
}

 The dataset includes 23 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026452-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bjnf4m
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((147.16433 -41.46787,147.16844 -41.47319,147.17771 -41.46915,147.17771 -41.46901,147.17375 -41.46403,147.17351 -41.46398,147.17327 -41.46398,147.16433 -41.46787))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (EN, VU, NT)"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026453-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13337018
title: Exploring Protein Conformational Changes Using a Large-scale Biophysical Sampling Augmented Deep Learning Strategy
DOI: 10.5281/zenodo.13337019
title: Exploring Protein Conformational Changes Using a Large-scale Biophysical Sampling Augmented Deep Learning Strategy
DOI: 10.6084/m9.figshare.27087064
title: Statistics of histological parameters of chemosensory system in lizards with different foraging modes

description: At least 20 sections were prepared for each lizard, with approximately four consecutive tissue samples per section to ensure that the NOS and VNS tissues were completely cut. Paraffin sections were stained using Hematoxylin-Eosin (H.E) staining. The NOS and VNS of each lizard were photographed using a Motic BA210 digital microscope (Motic Industrial Group Limited, China). The thickness of the sensory epithelium in the middle of the NOS and VNS of each lizard was measured under 100X magnification using a Motic Images Plus 3.0 micrometry system (Motic Industrial Group Limited, China), and each visual field was randomly measured three times. Three consecutive sections from the middle part of the NOS and VNS were selected from each lizard. The number of olfactory sensory cells and vomeronasal sensory cells in a 60×60 μm area in similar parts of each lizard was counted under 400 X magnification using the cell counting tool in Adobe Photoshop (24.0.0), one complete cell was counted when half of the cells fell inside the square.
DOI: 10.15468/dl.24hgfe
title: Occurrence Download

description: A dataset containing 323 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Globodera rostochiensis (Wollenweber, 1923) Skarbilovich, 1959"
 ]
}

 The dataset includes 323 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026455-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27087484
title: Supplementary Material for: Primary Small Cell Carcinoma of left Maxillary Sinus: A Case Report of rare Tumor on rare location

description: Introduction: Primary extrapulmonary small cell carcinoma (EPSCC) is a rare and aggressive tumor with diverse clinical manifestations. In the realm of head and neck pathology, EPSCC most commonly presents in the larynx or oral cavity. Sinonasal small cell neuroendocrine carcinoma represents a particularly infrequent and aggressive neoplasm affecting the nasal cavity and paranasal sinuses. Case Presentation: Here in we are presenting a case of a 40-year-old non-smoking male with left maxillary sinus EPSCC, demonstrating extensive local invasion and regional lymphadenopathy. The patient presented with nasal obstruction, ocular swelling, visual loss, and multiple neck swellings. Diagnosis was challenging, requiring a multidisciplinary approach and histopathological confirmation. Immunohistochemistry revealed positive cytokeratin AE1/AE3 and synaptophysin markers validating the diagnosis of small cell carcinoma. Conclusion: This case underscores the diagnostic complexities and highlights the importance of swift intervention and a multidisciplinary treatment approach for optimizing patient outcomes in rare and aggressive tumors like EPSCC. Early detection and prompt management are crucial in resource-limited settings to mitigate morbidity and mortality.
DOI: 10.6084/m9.figshare.27087484.v1
title: Supplementary Material for: Primary Small Cell Carcinoma of left Maxillary Sinus: A Case Report of rare Tumor on rare location

description: Introduction: Primary extrapulmonary small cell carcinoma (EPSCC) is a rare and aggressive tumor with diverse clinical manifestations. In the realm of head and neck pathology, EPSCC most commonly presents in the larynx or oral cavity. Sinonasal small cell neuroendocrine carcinoma represents a particularly infrequent and aggressive neoplasm affecting the nasal cavity and paranasal sinuses. Case Presentation: Here in we are presenting a case of a 40-year-old non-smoking male with left maxillary sinus EPSCC, demonstrating extensive local invasion and regional lymphadenopathy. The patient presented with nasal obstruction, ocular swelling, visual loss, and multiple neck swellings. Diagnosis was challenging, requiring a multidisciplinary approach and histopathological confirmation. Immunohistochemistry revealed positive cytokeratin AE1/AE3 and synaptophysin markers validating the diagnosis of small cell carcinoma. Conclusion: This case underscores the diagnostic complexities and highlights the importance of swift intervention and a multidisciplinary treatment approach for optimizing patient outcomes in rare and aggressive tumors like EPSCC. Early detection and prompt management are crucial in resource-limited settings to mitigate morbidity and mortality.
DOI: 10.15468/dl.cz6x5w
title: Occurrence Download

description: A dataset containing 93294 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Alytes obstetricans (Laurenti, 1768)"
 ]
}

 The dataset includes 93294 records from 1330 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026457-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nwj5pz
title: Occurrence Download

description: A dataset containing 854 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Piliocolobus badius (Kerr, 1792)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 854 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023781-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v7qpzc
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Labeo rubromaculatus Gilchrist & Thompson, 1913",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.5808 -24.13,35.5909 -24.0715,30.5701 -24.0715,30.5701 -28.5786,32.4847 -28.5786,32.55 -28.5222,33.0346 -26.8668,32.9741 -26.7838,33.0415 -26.059,32.9304 -26.0011,32.7994 -26.1281,32.6834 -26.0015,32.813 -25.8728,32.8513 -25.7166,33.3048 -25.3731,35.1489 -24.6699,35.5808 -24.13))"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023780-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15221911
title: Cellobiose dehydrogenase sequences analysis

description: Sequence alignments from different cellobiose dehydrogenase classes, coming from database mining and sequence similarity network analysis, as described in the published article: Giorgianni, A.; Zenone, A.; Sützl, L.; Csarman, F.; Ludwig, R. Exploring Class III Cellobiose Dehydrogenase: Sequence Analysis and Optimized Recombinant Expression. Microb. Cell Fact. 2024, 23, 146, doi: 10.1186/s12934-024-02420-2.

The dataset includes sequence alignments after the separation into different classes (e.g. Class_I.fasta), after the removal of all the sequences lacking a signal peptide (e.g. Class_I_noSP.fasta), and the removal of 99% redundancy (e.g. Class_I_noSP_red99.fasta). To remove sequences lacking the signal peptide we used Signal P 5.0 (https://services.healthtech.dtu.dk/services/SignalP-5.0/) [Almagro Armenteros JJ, Tsirigos KD, Sønderby CK, Petersen TN, Winther O, Brunak S, et al. SignalP 5.0 improves signal peptide predictions using deep neural networks. Nat Biotechnol. 2019;37(4):420–3].  Also included is the alignment of sequences trimmed and used for phylogenetic tree analysis as described in the published article. The alignments were obtained using MAFFT (G-INS-I algorithm) [Katoh K, Standley DM. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 2013;30(4):772–80].
DOI: 10.5281/zenodo.15221912
title: Cellobiose dehydrogenase sequences analysis

description: Sequence alignments from different cellobiose dehydrogenase classes, coming from database mining and sequence similarity network analysis, as described in the published article: Giorgianni, A.; Zenone, A.; Sützl, L.; Csarman, F.; Ludwig, R. Exploring Class III Cellobiose Dehydrogenase: Sequence Analysis and Optimized Recombinant Expression. Microb. Cell Fact. 2024, 23, 146, doi: 10.1186/s12934-024-02420-2.

The dataset includes sequence alignments after the separation into different classes (e.g. Class_I.fasta), after the removal of all the sequences lacking a signal peptide (e.g. Class_I_noSP.fasta), and the removal of 99% redundancy (e.g. Class_I_noSP_red99.fasta). To remove sequences lacking the signal peptide we used Signal P 5.0 (https://services.healthtech.dtu.dk/services/SignalP-5.0/) [Almagro Armenteros JJ, Tsirigos KD, Sønderby CK, Petersen TN, Winther O, Brunak S, et al. SignalP 5.0 improves signal peptide predictions using deep neural networks. Nat Biotechnol. 2019;37(4):420–3].  Also included is the alignment of sequences trimmed and used for phylogenetic tree analysis as described in the published article. The alignments were obtained using MAFFT (G-INS-I algorithm) [Katoh K, Standley DM. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 2013;30(4):772–80].
DOI: 10.13144/lil-0586
title: Enquête mensuelle de conjoncture auprès des ménages - 1996

description: Les enquêtes de conjoncture auprès des ménages ont lieu tous les mois auprès d'un échantillon aléatoire d'environ 2000 ménages, renouvelé par tiers à chaque enquête. Le questionnement concerne les opinions du ménage sur leur perception du niveau de vie et son évolution estimée en France, sur la situation de l'emploi, le nombre de chômeurs, l'évolution des prix, l'opportunité de faire des achats importants (meubles, machine à laver, télévision...), l'épargne. Les ménages sont interrogés sur leur situation financière et leurs intentions d'achat en matière de biens d'équipement, de logement, de voiture. Les caractéristiques socio-démographiques du ménage sont brièvement décrites. En 1996, apparaissent les micro-plateformes qui portent sur des questions particulières : vacances, équipement du ménage, recours à un avocat, animaux familiers
DOI: 10.15468/dl.pzqar2
title: Occurrence Download

description: A dataset containing 150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Machaeranthera pinnatifida (Hook.) Shinners",
 "Geometry POLYGON((-111 37, -99 37, -99 46, -111 46, -111 37))"
 ]
}

 The dataset includes 150 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000509-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kjsf3v
title: Occurrence Download

description: A dataset containing 199 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kuepferia otophora (Franch.) Adr.Favre"
 ]
}

 The dataset includes 199 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038955-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qeq0po
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Drosera spilos N.Marchant & Lowrie"
 ]
}

 The dataset includes 64 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009826-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hrt37c
title: Occurrence Download

description: A dataset containing 1304952 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-161.86195 10.16548,-45.13805 10.16548,-45.13805 56.83452,-161.86195 56.83452,-161.86195 10.16548))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aphelocoma californica (Vigors, 1839)"
 ]
}

 The dataset includes 1304952 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102045-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9nd43c
title: Occurrence Download

description: A dataset containing 7329 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Geometry POLYGON((-118.24169 14.37394,-85.02504 14.37394,-85.02504 33.61764,-118.24169 33.61764,-118.24169 14.37394))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Odocoileus virginianus (Zimmermann, 1780)"
 ]
}

 The dataset includes 7329 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038967-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.czh7id
title: Occurrence Download

description: A dataset containing 204 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Year 1990-2018",
 "HasCoordinate is true",
 "TaxonKey is Bothrops asper (Garman, 1883)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 204 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009827-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25572852.v1
title: hydride_content_images_240409.zip

description: Hydride content prediction by image-based machine learning
DOI: 10.15468/dl.6v3hrw
title: Occurrence Download

description: A dataset containing 155289 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coregonus albula (Linnaeus, 1758)"
 ]
}

 The dataset includes 155289 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111493-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6286td
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Uvaria lamponga Scheff."
 ]
}

 The dataset includes 16 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133060-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tyuewd
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kuepferia sichitoensis (C.Marquand) Adr.Favre"
 ]
}

 The dataset includes 19 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038960-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nec5ex
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Korea, Republic of",
 "TaxonKey is Dryocopus martius (Linnaeus, 1758)"
 ]
}

 The dataset includes 43 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009827-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ccacjp
title: Occurrence Download

description: A dataset containing 678392 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dacelo novaeguineae (Hermann, 1783)"
 ]
}

 The dataset includes 678392 records from 139 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000719-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tyguvf
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vernonia saigonensis Gagnep."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133061-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mpedb2
title: Occurrence Download

description: A dataset containing 39048 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aedes aegypti (Linnaeus, 1762)"
 ]
}

 The dataset includes 39048 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009827-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xbsez9
title: Occurrence Download

description: A dataset containing 154 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lecanopteris pumila Blume ex Copel."
 ]
}

 The dataset includes 154 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038979-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.da343h
title: Occurrence Download

description: A dataset containing 1122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nardus stricta L.",
 "MediaType is Image",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 1122 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0408617-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.365dwq
title: Occurrence Download

description: A dataset containing 1124 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ambystoma altamirani Dugès, 1895"
 ]
}

 The dataset includes 1124 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038963-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bkejrw
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-76.65444 5.70584,-76.66114 5.70584,-76.6608 5.69559,-76.66158 5.68929,-76.662 5.68585,-76.66268 5.67373,-76.64294 5.66928,-76.63659 5.67133,-76.63659 5.67133,-76.63093 5.67356,-76.63264 5.68158,-76.63985 5.70037,-76.65444 5.70584))",
 "DatasetKey is EOD – eBird Observation Dataset",
 "TaxonKey is Psittaciformes",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009827-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r68rww
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-4.57545 53.29661,43.15016 53.29661,43.15016 72.37846,-4.57545 72.37846,-4.57545 53.29661))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gulo gulo (Linnaeus, 1758)"
 ]
}

 The dataset's 3 records were derived from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134691-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.