cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17151950.v1
title: Supplementary Material for: The Association between Evidence-Based Healthcare Practices and Outcomes among Preterm Births in China

description: <b><i>Introduction:</i></b> Very preterm infants are at high risk of early death or severe brain injury, with potential for impaired long-term neurodevelopmental function and physical health. There are evidence-based healthcare practices that can reduce the incidence. <b><i>Materials and Methods:</i></b> Infants born at 24–31<sup>6</sup> weeks gestational age and admitted within 24 h to NICUs participating in the Chinese Neonatal Network in 2019 were included. We examined the association between 4 evidence-based practices: inborn (born in a tertiary hospital in the Chinese Neonatal Network), ACS (any antenatal corticosteroid), MgSO<sub>4</sub> (prenatal magnesium sulfate), and NT (normothermic temperature [36.0–37.5°C] at admission) and early death and/or severe brain injury in the study population. <b><i>Results:</i></b> Of 6,035 eligible infants, the incidence of early death and/or severe brain injury was 10.6%. Exposure to ACS only was associated with significant lower incidence of death and/or severe brain injury than none (aOR, 0.71; 95% CI: 0.57–0.88), but not MgSO<sub>4</sub> only (aOR, 0.97; 95% CI: 0.81–1.17), NT only (aOR, 0.91; 95% CI: 0.76–1.08), or inborn only (aOR, 0.91; 95% CI: 0.72–1.15). The association between number of practices and incidence of early death and/or severe brain injury is as follows: none = 23% (31/138), any 1 = 14% (84/592), any 2 = 12% (185/1,538), any 3 = 9% (202/2,285), and all 4 = 9% (140/1,482). <b><i>Discussion/Conclusion:</i></b> More comprehensive use of evidence-based practices was associated with improved survival without severe brain injury among very preterm infants born at &lt;32 weeks gestational age.
DOI: 10.17632/nwkpyr2nmh
title: Kinase assay - GRPR activation

description: A kinase assay was carried out using the STK pamgene kinase assay to understand what was the signaling induced by the activation of GRPR. 1057 mouse melanoma cells were stimulated for 15 minutes with 10 nM GRP and/or 1µM RC-3095 in F12 0.5% FBS. Proteins were extracted with M-Per buffer supplemented with Halt protease Inhibitor cocktail (Thermo Scientific #78430) and Halt phosphatase inhibitor cocktail (Thermo Fisher #78442) and immediatly snap-frozen. 1 µg of proteins were analysed using STK chips and ran according to the manufacturer recommendation.
Four biological replicates were generated
Groups: 
 - MOCK = 0.1% DMSO
 - GRP = 10nM GRP in 0.1% DMSO
 - RC = 1µM RC-3095 in 0.1% DMSO
 - MOCK = 10nM GRP + 1µM RC-3095 in 0.1% DMSO
DOI: 10.6084/m9.figshare.23607684.v1
title: patient54.rar

description: A Patient with fundus images that taken by Ret-cam.
DOI: 10.17632/smmf6zzvdz
title: (Dataset) Accessibility in PAR

description: he "Accessibility in PAR" dataset provides a comprehensive assessment of the PAR platform's accessibility from the perspective of physicians. This dataset includes detailed results from the evaluation conducted on 11 web pages of the platform, utilizing automated tools like WAVE and manual assessment by accessibility experts and physicians specialized in physical therapy. The data offers a holistic view of compliance with WCAG 2.2 accessibility standards, highlighting areas of robust compliance and those needing improvement.

Key metrics encompass compliance rates in fundamental principles such as Perceivable, Operable, Understandable, and Robust, delivering detailed insights into the platform's effectiveness concerning aspects like image descriptions, semantic structures, navigation, and assistive technology compatibility. Specific challenges, such as the ARIA category, are emphasized, pinpointing critical areas requiring attention for enhancing the user experience for individuals with disabilities.

This dataset is valuable for developers, designers, and healthcare professionals seeking to comprehend and enhance accessibility in digital healthcare platforms, fostering an inclusive and equitable approach to healthcare services delivery.
DOI: 10.6084/m9.figshare.22828355.v1
title: Danger under wheels: mammal roadkills in the threaten lowland Atlantic Forest in southeast Brazil

description: ABSTRACT Understanding the ecological impacts of roads on mammals requires periodic monitoring of roads, and identification of both temporal and spatial distribution of roadkills (i.e., roadkill hotspots). The main aim of the study was to identify the most roadkilled mammals and evaluate the temporal and spatial distribution of roadkills in the RJ-122, a highway that crosses the threaten lowland Atlantic Forest in the state of Rio de Janeiro, southeast Brazil. Between October 2017 and January 2020, an intense monitoring study was conducted, with the carcasses of the roadkilled mammals being collected three times a week. Overall, we recorded 295 roadkilled mammals belonging to 22 species, resulting in 11 roadkills per month for the RJ-122 highway. The black-eared opossum, Didelphis aurita (N=149, 51%) stood out as the most roadkilled mammal, followed by porcupine, Coendou spinosus (N= 24, 8%), crab-eating fox, Cerdocyon thous (N= 23, 8), nine-banded armadillo, Dasypus novemcinctus (N= 23, 8%), and white-tufted marmoset, Callithrix jacchus (N= 20, 7%). Roadkills on the RJ-122 varied throughout the year, being more frequent in the rainy season (N=180) than in the dry season (N=115), and were concentrated in two hotspots, indicating some critical points with high roadkill frequency. Hotspots were associated with areas with dense natural vegetation, which can function as forest corridors in this fragmented landscape. Based on our results, several mitigation measures are recommended for the RJ-122 highway.
DOI: 10.6084/m9.figshare.25163666.v1
title: Osseointegrative and antimicrobial properties of graphene oxide nano coated dental implants: A systematic review

description: Osseointegration stands as a pivotal concept within the realm of dental implants, signifying the intricate process through which a dental implant integrates with the adjoining bone tissue. Graphene oxide (GO) has been shown to promote osseointegration, the process by which the implant fuses with the surrounding bone. The objective of this study was to assess the osseointegrative and antimicrobial properties of GO nano coated dental implants. A systematic search was conducted using electronic databases (e.g., PubMed, Scopus, Web of Science) to identify relevant studies published. Inclusion criteria encompassed studies that evaluated the effects of GO nano coating on osseointegrative and antimicrobial characteristics of dental implants. Studies not written in English and published before 2012 were excluded.Results: The initial search yielded a total of 127 potential studies, of which six met the inclusion criteria and five were included in the review. These studies provided data on GO nano coated dental implants and their osseointegrative and antimicrobial properties. All the included studies showed moderate risk of bias. None of the studies provided information related to sample size calculation or sampling technique.The findings from the included studies demonstrated that GO nano coating had a positive impact on osseointegrative properties of dental implants. Enhanced bone-implant contact and increased bone density were observed in animals and humans receiving GO nano coated implants. Furthermore, the antimicrobial properties of GO nano coating were found to inhibit bacterial colonization and biofilm formation on the implant surface, reducing the risk of implant-associated infections.The findings indicate that GO nano coating holds promise in enhancing the success rate and longevity of dental implants. However, more studies with larger sample sizes, are needed to further strengthen the evidence and determine the long-term effects of GO nano coated dental implants.
DOI: 10.17632/wrcydst96z
title: Supplementary Tables and Sequence Alignment: Symmetric and asymmetric components of shape variation in the diatom genus Frustulia (Bacillariophyta)

description: Table S1: Size ranges of the strains under study and sizes of morphospecies from publications. Table S2: GenBank accession numbers. Table S3: Matrix of Mann–Whitney pairwise comparisons of all components of asymmetry. Table S4: Results from the analysis of trait evolution. A concatenated alignment based on four molecular markers.
DOI: 10.6084/m9.figshare.784942.v1
title: blur - camera control software using the GenICam interface

description: blur is a set of programs used by the Mount Erebus Volcano Observatory (MEVO) to control a thermal camera system for year-round monitoring of the Erebus lava lake. Written in a mixture of C and C++, the software uses the open source Aravis library to interface with the thermal camera (which supports the GenICam interface). Although it is designed to run on embedded ARM systems, it will run on any Linux based system. It also includes a real-time image viewer written in Python. See the README file for more details. More details about the software and the camera system that it was designed to run can be found in the article "Autonomous thermal camera system for monitoring the active lava lake at Erebus volcano, Antarctica" published in Geoscientific Instrumentation, Methods and Data Systems (the DOI for this article is in the links below).
DOI: 10.17632/htskytjh6v
title: Structural basis for plasmid restriction by SMC JET nuclease

description: DNA loop-extruding SMC complexes play crucial roles in chromosome folding and DNA immunity. Prokaryotic SMC Wadjet (JET) complexes limit the spread of plasmids through DNA cleavage, yet the mechanisms for plasmid recognition are unresolved. We show that artificial DNA circularization renders linear DNA susceptible to JET nuclease cleavage. Unlike free DNA, JET cleaves immobilized plasmid DNA at a specific
site, the plasmid-anchoring point, showing that the anchor hinders DNA extrusion but not DNA cleavage. Structures of plasmid-bound JetABC reveal two presumably stalled SMC motor units that are drastically rearranged from the resting state, together entrapping a U-shaped DNA segment, which is further converted to kinked V-shaped cleavage substrate by JetD nuclease binding. Our findings uncover mechanical bending of
residual unextruded DNA as molecular signature for plasmid recognition and non-self DNA elimination. We moreover elucidate key elements of SMC loop extrusion, including motor directionality and the structure of a DNA-holding state.
DOI: 10.6084/m9.figshare.24501742.v1
title: kartawik_data.xlsx

description: Fungal communities are intricate components of the natural world, comprising numerous species that interact simultaneously. The complexity of these communities increases proportionally with the emergence of additional taxa and the formation of mutual interactions among species. The composition of fungal communities changes over time and space, driven by the influence of abiotic factors and the pool of potential colonizing species available in the substrate. With shifting climatic conditions and the growing occurrence of extreme weather events, the frequency and magnitude of damages caused by strong winds are on the rise. The objectives of this study are: (I) qualitative and quantitative analysis of fungal community composition inhabiting pine wood (a) one year, three years, and five years after damage; (b) undamaged and damaged pine wood (due to windbreaks and windthrows) resulting from a hurricane (II) analysis of changes in the proportion of trophic groups (pathogens, saprotrophs, endotrophs, mycorrhizal fungi) inhabiting damaged pine wood<br>(a) one year, three years, and five years after damage; (b) undamaged and damaged pine wood (due to windbreaks and windthrows) resulting from a hurricane. An additional objective was to analyze changes in the content of biogenic elements (nitrogen, carbon, hydrogen) in hurricane-damaged pine wood at the initial stages of decomposition. The research area was delineated in a forest stand in the Gniezno Forest District. In each research plot, three trees were selected, varying in the manner of wind-induced damage: undamaged trees, trees without crowns (windbreaks), and trees lying above ground with their root systems intact (windthrows). In November of the years 2018, 2020, and 2022, wood samples were collected in the form of drillings. Commu nity analysis was conducted based on the ITS1 region using Illumina sequencing. Fungal communities at the initial stages of pine wood decomposition exhibited high quantitative and qualitative richness. The most abundant species included <i>Armillaria</i> spp<i>, Coniophora arida, Diplodia </i>spp, <i>Postia </i>spp., <i>Trichoderma </i>spp, <i>Xylodon flaviporus </i>and <i>Xylodon </i>spp. Although the presence of various trophic groups was demonstrated, saprotrophs dominated the fungal communities. Each year, there was an increasing representation of <i>Basidiomycota</i> taxa responsible for brown wood rot.
DOI: 10.6084/m9.figshare.5128966.v1
title: Supplementary Material for: A Randomised Crossover Trial: The Effect of Inulin on Glucose Homeostasis in Subtypes of Prediabetes

description: <b><i>Background:</i></b> Fermentable carbohydrates (FCHO) have been shown to improve insulin sensitivity in normoglycaemic and insulin-resistant subjects. However, there are no data on subjects with prediabetes. We aimed to investigate the effect of the FCHO inulin, on glucose homeostasis in subjects with prediabetes. <b><i>Methods:</i></b> In a double-blind and placebo-controlled crossover study, 40 volunteers with prediabetes were randomly allocated to take 30 g/day of inulin or cellulose for 2 weeks in a crossover trial, following a 4-week dose-escalation run-in. Fasting insulin and glucose were measured for all subjects. Fifteen of the 40 subjects also underwent a meal tolerance test to assess insulin sensitivity, free fatty acids and glucagon-like peptide-1 concentrations. A subanalysis was carried out to examine any differences between the prediabetes subtypes. <b><i>Results:</i></b> Inulin was associated with a significant increase in <sub>(0-30 min)</sub>incremental AUC (iAUC) for insulin (treatment: p &lt; 0.04) and <sub>(0-60 min)</sub>iAUC for insulin (treatment: p &lt; 0.04) compared to control. There was a significant reduction in insulin resistance measured by the homeostatic model assessment in the isolated-impaired fasting glucose (p &lt; 0.05) but not in the isolated-impaired glucose tolerance groups (p = 0.59). <b><i>Conclusion:</i></b> The FCHO, inulin, may have unique metabolic effects that are of particular benefit to people at risk of diabetes, which warrant further investigation.
DOI: 10.6084/m9.figshare.6990314.v1
title: Oa_3_bend micro-CT scan

description: Ophiothrix angulata specimen Oa_3 scanned with arm flexed dorsally
DOI: 10.6084/m9.figshare.26780110.v1
title: Optimized phase functions and Zernike coefficients (Fig2).xlsx

description: This dataset includes optimization results for both CCAM and CCBM configurations, i.e., the Zernike coefficients and corresponding composed phase functions.
DOI: 10.6084/m9.figshare.27154224.v1
title: Differentially expressed gene (DEG) analysis from GEO database (GSE11151, GSE40435, and GSE53757)

description: Three microarray datasets of ccRCC and normal kidney tissues, including GSE11151, GSE40435, and GSE53757, were obtained from the GEO database (https://www.ncbi.nlm.nih.gov/geo/).
DOI: 10.6084/m9.figshare.28246451.v2
title: Improving carbon budgets by accounting for inorganic carbon in seagrass ecosystems

description: Inorganic Carbon's Role in Seagrass Carbon Budgets
DOI: 10.17632/r6v7yktxnt
title: Spatial Transcriptomic changes in mouse iWAT with exercise training

description: The spatial transcriptomics data deposited herein are included in the manuscript by Nigro P. & Vamvini M., et al., with the title " Exercise Training Remodels Inguinal White Adipose Tissue Through Adaptations in Innervation, Vascularization and the Extracellular Matrix". These data were generated by using inguinal subcutaneous white adipose tissue from wild type and PRDM16AKO C57BL6n male mice with and without exercise training. The spatial transcriptomics data were generated using FPPE samples using the Visium platform from 10x genomics.
DOI: 10.17632/jv6cbg8m3s
title: Dataset Local Government Financial Performance, Capital Expenditure and Economic Growth

description: This data is secondary data for research on regional financial performance on capital expenditure and its impact on economic growth in Banten Province Indonesia. The data used consists of independence ratio data, effectiveness ratio data, fiscal decentralization ratio data, dependency data, efficiency data, compatibility data, capital expenditure data, and economic growth data. the study took a sample of cities and districts in Banten Province Indonesia.
DOI: 10.6084/m9.figshare.29119499.v1
title: FIGURES_Structural and Functional Insights into the Role of Laminin G Domains of Protein S in Factor IXa Inhibition

description: These findings highlight the critical role of LG domains in the anticoagulant function of Protein S and we elucidate the structural contribution of these domains in FIXa binding and inhibition.
DOI: 10.17632/dm6m5cw7vn
title: Metabolomic profiling of primary leukemia samples

description: Metabolomic profiling results of flash frozen bone marrow samples from a cohort of T-cell acute leukemia samples (n = 22, including ETP-ALL (n = 9) and T-ALL (n = 13), categorized by immunophenotype and genetic alterations) by chromatography-tandem mass spectrometry. Quantitative profiling of 403 named cellular metabolites normalized for sample weight and protein content.
DOI: 10.17632/pht9s48shp
title: Legal Restrictions and International Currencies: An Experimental Approach: Data set and codes

description: We include data, codes and instructions to help readers understand the data and reproduce the results in our article. The read me file provides details on how to proceed to reproduce the results in our article.
DOI: 10.17632/ywdtdzb99t
title: ADEKCURR-DB

description: Dataset of all BankNotes of Nigeria. Presented in this article is a dataset of all currency denominations in Nigeria.The presented denomination are yet to be preprocessed. There are a total of 580 banknote images. The currency denomination in the images are made up of 5 naira, 10 naira, 20 naira, 50 naira, 100 naira, 200 naira, 500 naira and 1000 naira. 10.34% of the image is 5 Naira, 11.38% of the image is 10 naira, 6.55% of the image is 20 naira, 8.62% of the image is 50 naira, 17.93% of the image is 100 naira, 8.62% of the image is 200 naira, 12.76% of the image is 500 naira and 10% of the image is 1000 naira. The currency images vary in size as no preprocessing has been performed on them. The images are coloured RGB format and saved in JPEG format.
DOI: 10.6084/m9.figshare.11346854.v5
title: Database of confusion matrices (Microsoft Access)

description: <b>Summary: </b>Database of confusion matrices retrieved from scientific literature. Suitable for research on the creation and explotation of the confusion matrix that remain as interestint topics, such as new tools, sampling design, indices derived from the matrix, proposals in testing statistical hypotheses and so on.<b><br></b><b>Format:</b> Microsoft Access
DOI: 10.6084/m9.figshare.26265050.v8
title: Late-Copernican smooth deposits sampled by Chang’E-6

description: Data generated in this work, including the high-resolution digital elevation model, entrope map, phase ratio map, and shape files for boundaries of smooth deposits, regions used to extract reflectance spectra, phase ratio, radar and thermophysical properties, and crater statistics areas and collected craters.
DOI: 10.17632/xkry6rjtjg
title: 2014-2019 Systematic Reviews and Meta-Analyses Data: Evidence-Based Biomedical Publications in MEDLINE with authors from Sub-Saharan Africa

description: Bibliographic data of biomedical systematic reviews and meta-analysis studies published between 2014 and 2019, where at least one author is affiliated with an institution in Sub-Saharan Africa was retrieved from MEDLINE via the PubMed search engine. All forty-six (46) countries in Sub-Saharan Africa were included in the search query as affiliation. The search strategy are decripted in four steps: Step #1: Nigeria[Affiliation] OR South Africa[Affiliation] OR Ghana[Affiliation] OR Tanzania[Affiliation] OR Kenya[Affiliation] OR Rwanda[Affiliation] OR Botswana[Affiliation] OR Cameroun[Affiliation] OR Senegal[Affiliation] OR Angola[Affiliation] OR Uganda[Affiliation] OR Mali[Affiliation] OR Sierra Leone[Affiliation] OR Ivory Coast[Affiliation] OR Ethiopia[Affiliation] OR Lesotho[Affiliation] OR Zambia[Affiliation] OR Zimbabwe[Affiliation] OR Namibia[Affiliation] OR Guinea[Affiliation] OR Mauritius[Affiliation] OR Mozambique[Affiliation] OR Niger[Affiliation] OR Seychelles[Affiliation] OR Burkina Faso[Affiliation] OR Burundi[Affiliation] OR Cape Verde[Affiliation] OR Cameroon[Affiliation] OR Central African Republic[Affiliation] OR Chad[Affiliation] OR Comoros[Affiliation] OR Democratic Republic of Congo[Affiliation] OR DR Congo[Affiliation] OR Djibouti[Affiliation] OR Cote D'ivoire[Affiliation] OR Congo[Affiliation] OR Equatorial Guinea[Affiliation] OR Eritrea[Affiliation] OR Gabon[Affiliation] OR Guinea-Bissau[Affiliation] OR Madagascar[Affiliation] OR Congo Republic[Affiliation] OR Sao Tome and Principe[Affiliation] OR Swaziland[Affiliation] OR Togo[Affiliation] OR Benin[Affiliation] OR Liberia[Affiliation] OR Namibia[Affiliation] OR Gambia[Affiliation] OR (Cent Afr Republ[Affiliation]) OR (Equat Guinea[Affiliation]) OR (Papua N Guinea[Affiliation]) OR (Sao Tome E Prin[Affiliation]) OR Principe[Affiliation] OR Sao Tome E Principe[Affiliation] Step #2 The filter was set to Meta-Analysis[ptyp] OR systematic[sb] Step #3: Text word search systematic review[Text Word] OR meta-analysis[Text Word] OR meta analysis[Text Word] Step #4: Set publication date to: "2014/01/01"[PDAT] : "2019/12/31"[PDAT] The search which was done on April 2nd, 2020 returned 3,171 results. The bibliographic data collected with the queries posed to PubMed were cleaned, duplicates were removed and articles that were not meta-analysis or systematic reviews were removed. MEDLINE is an authoritative and specialized biomedical database for indexing biomedical publications. Query: (Step #1) AND (Step #2 OR Step #3) AND (Step #4)
DOI: 10.6084/m9.figshare.25805215.v1
title: rpS3 gene sequences from microbes in springs from Kamchatka

description: All rpS3 genes were predicted from the metagenomic dataset of KAM3811 (ExploCarb_3811S) and KAM3808 (ExploCarb_3808S). The data is linked to the publication "Environmental activity-based protein profiling for function-driven enzyme discovery from natural communities" by Ninck <i>et al.</i> 2024 in Environmental Microbiome.