cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/3rnd9h4hgx
title: The SABR trial and mouse ILDR experiments

description: The SABR trial (NCT02992912): Patients with advanced colorectal cancer (CRC), renal cell carcinoma, non-small cell lung carcinoma (NSCLC) and sarcomas were enrolled in an phase 2 trial. Atezolizumab (anti-PD-L1 Ab) was delivered in combination with concurrent SABR (recommended dose of 45Gy in 3 fractions,) at the 2nd cycle of atezolizumab. Translational analyses were performed in the context of ONCOBIOTICS study in Gustave Roussy (NCT04567446). Thirty-two participants were enrolled in the translational part of this study. Serum samples were collected from these patients at baseline (V1), before the 2nd cycle of αPD-L1 (V2), after SABR (V3) or at 6 months since the 1st cycle of αPD-L1 (V4) and subjected to targeted metabolomic analysis. The relative abundance of metabolites was correlated with patients survival (OS12 and OS24). 

The mouse ILDR experiments: MC38 bearing C57BL/6J mice were subjected to intraperitoneal (i.p.) injections of αPD-L1 Ab with or without 1Gy intestinal low-dose irradiation (ILDR). Plasma samples were collected from these mice at 3 days after ILDR and subjected to targeted metabolomic analysis.
DOI: 10.6084/m9.figshare.19093760.v1
title: TableE13-Pseudo-bulk-of-scRNA-seq-EMT-differential-lncRNA-expression-list.xlsx

description: TableE13-Pseudo-bulk-of-scRNA-seq-EMT-differential-lncRNA-expression-list.xlsx
DOI: 10.6084/m9.figshare.1287365.v7
title: Effect of Roadside Vegetation Cutting on Moose Browsing

description: These datafiles are used in analyses contained in the manuscript Tanner, A.L., and Leroux, S.J. [submitted]. Effect of Roadside Vegetation Cutting on Moose Browsing. These data include information on the amount of moose browse on vegetation in roadside areas on the Avalon Peninsula and central Newfoundland, Canada as well as biophysical features associated with the areas. The file also includes information on the proportion of plants browsed by moose in order to determine what species were considered preferred or high quality by moose in Newfoundland. This file also contains the R code that we used to conduct the analysis as well as for the creation of figures for the manuscript. We have included comments throughout the code in order to understand the operations being performed. When importing a new dataset (either: vegdataperplantspp.csv, vegdataplantswilcox.csv, vegdatacorr.csv, or vegdataplants.csv) while running the R code, be sure to set the Please read Metadata file carefully before using any of this data.
DOI: 10.6084/m9.figshare.23629467.v1
title: NCLDV Genomes

description: Five recovered NCLDV genomes from the study. Also includes a file with statistics on the genomes.
DOI: 10.6084/m9.figshare.24015315.v1
title: Supplemental Table 1.pdf

description: <b>Supplemental Table 1 PCR primer sequences for experimental and references genes.</b>
DOI: 10.17632/x9nxffm2cz
title: Need based assessment study of mothers with pre-menarche daughters.

description: The present study titled “Needs based assessment study of mothers with pre-menarche daughters” is aimed at understanding the requirements of mothers of pre-menarche girls in North Bengaluru urban constituency. As a qualitative research technique, the study employed focus group discussion technique to procure data. It was a mixed group of mothers of pre-menarche girls speaking Tamil and Urdu language and practising Islam, Christianity and Hinduism. The themes and subthemes have delineated predisposing, reinforcing and enabling factors. The study has unveiled thoughts and feelings of mothers anticipating their daughter’s onset of menstruation. The study has shown the lack of biological information, misconception and misinformation that mothers have about menstruation, and as a result the inability to communicate about menstruation. Their understanding of period is based on their lived experience of menstruation, which is related to body discomfort and restrictions imposed on them at menarche and thereafter. The study displays cultural practices that will be introduced to their daughters at the time of menarche as tradition. The current study has also revealed that mothers will introduce healthy menstrual hygiene practices at menarche.
DOI: 10.6084/m9.figshare.23716170.v1
title: Values and Perfectionism

description: These are the data used in the manuscript.
DOI: 10.6084/m9.figshare.24312352.v1
title: Audit Quality, Audit committee characteristics and Earnings management

description: The data were extracted from selected universal banks in Ghana audited annual reports
DOI: 10.17608/k6.auckland.4668247.v1
title: SCoA Master Excel

description: The SCoA Excel spreadsheet contains all items from all six versions and shows the history of items as they were added, deleted, or carried through. It also shows the factor to which each items was aligned.
DOI: 10.6084/m9.figshare.25370527.v2
title: DUO

description: Aiming at the problem of low underwater recognition accuracy caused by dense and fuzzy targets in underwater target detection, an underwater target detection algorithm combining attention mechanism and downsampling is proposed.For the experimental evaluation, the DetectingUnderwater Objects (DUO) dataset was used,which was collected and re-annotated based onthe corresponding dataset. The dataset containsa total of 7782 images, including 6671 images fortraining and 1111 images for testing. The totalnumber of targets in the dataset is 74,515, ofwhich the number of holothurians, echinus, scal?lops, and starfish are 7,887, 50,156, 1,924, and14,548, respectively.
DOI: 10.6084/m9.figshare.3413869.v2
title: Encuesta sobre el uso de Internet, servicios sociales y herramientas tecnológicas de los estudiantes de la carrera de ingeniería en sistemas y computación en la Facultad de Ingeniería de la UNACH

description: Encuesta sobre el uso de Internet, servicios sociales y herramientas tecnológicas de los estudiantes de la carrera de ingeniería en sistemas y computación en la Facultad de Ingeniería de la UNACH
DOI: 10.6084/m9.figshare.3397603.v13
title: Custom toolbars and mini applications with Action Bar

description: The Action Bar ImageJ plugin facilitates creation of additional custom toolbars, using simple macro-like toolbar description file. Readers will learn how to setup a basic action bar, and how to use the latest features of this plugin. Button actions are basically macro programs, so action bars can interact with all standard ImageJ components. Primary use of these custom toolbars is to keep at hand often used commands, plugins and macros, but toolbars sets can be turned into mini applications with minimal effort. With these highly task-oriented applications, end users can focus on just using a simple system with absolutely no prior knowledge of ImageJ. This paper is aimed at ImageJ users with some previous experience with the macro language. First version was published in June 2006, and this is the support material for a workshop I first gave at the 2008 ImageJ conference in Luxembourg.
DOI: 10.17632/nb46s9trx3
title: Tumour Infiltrating Lymphocytes in Follicular Lymphoma -Nuclear annotations

description: Annotations ------------- In a follicular lymphoma dataset, annotations are provided for nuclear segmentation. In a set of 41 small patches the outlines have been drawn manually for 69780 nuclei. A patch from the DAPI channel and corresponding label are given as .tif images. Labels are 16-bit integer mask arrays where all pixels belonging to each nucleus are randomly assigned an integer number. Some patches contain no stained nuclei, as negative controls. Additional information on preparation of this data is provided in the dataset linked below.
DOI: 10.17632/vrf9zdw4dr
title: Dataset: Effect of chronic heat stress and inactive Salmonella Enteritidis on the immune-neuroendocrine interface of adult Japanese quail.

description: Abstract: Birds integrate challenging situations into the Immuno-neuroendocrine (INE) system to maintain homeostasis, but multiple challenges can compromise their response, impairing welfare. Global warming and climate change have created new scenarios increasing the chances for chronic heat stress (CHS) exposures. Although immunosuppression caused by CHS can be reversed when conditions normalize, it may impair abilities to cope with new/successive immune challenges. We evaluated in adult Japanese quail (Coturnix coturnix), the effect of the succession of CHS and an immune challenge on the INE interface. Quails were exposed to 9 days of CHS. Then, we applied an immune challenge with Salmonella ser. Enteritidis antigen (ICH). Ten quail pairs (1 male and 1 female) were used for each combination treatment (non-CHS/non-ICH, non-CHS/ICH, CHS/non-ICH, and CHS/ICH), totalizing n = 80. Inflammatory and humoral immune responses, heterophils/lymphocytes (H/L) ratio, blood glucose concentration, malondialdehyde (MDA) levels, and superoxide dismutase (SOD) activity were assessed 14 days after the challenges ended. No differences were found in inflammatory or humoral immune responses. The H/L ratio was lower in males and, regardless of sex, birds submitted to CHS showed decreased responses. CHS-males exhibited lower glucose levels, while females kept them unchanged. Females showed greater MDA levels than males regardless of treatments. Female antioxidant (SOD) capacity showed higher values when going through CHS or ICH than CHS/Non-ICH males. No differences were found in total blood proteins among treatments. In conclusion, sequential challenges did not negatively affect humoral responses or pro-inflammatory potential in quail. The observed sex disparities in the basal H/L ratio, energy balance/sterile inflammation potential, and oxidative status following the CHS and ICH challenges, suggest that males are more susceptible than females. If confirmed, focus should be primary on males when aiming on strategies to mitigate welfare-related challenges.
DOI: 10.6084/m9.figshare.21125797.v1
title: Table 2. References analyzed in the systematic review of the literature

description: References analyzed in the systematic review of the literature
DOI: 10.6084/m9.figshare.24312694.v1
title: Data file for Song et al. 2023 <i>PLOS One</i> paper

description: Data file for Song et al. (2013) Acoustic correlates of perceived personality from Korean utterances in a formal communicative setting, <i>PLOS One</i>
DOI: 10.6084/m9.figshare.26895724.v1
title: Data, statistical analysis and graphics.

description: We developed a model of MMAE-induced CIPN and CICI and used behavior and sensory tests to analyze these conditions. We also evaluated calcium signaling in neuropathic tissues and tumor progression upon treatments with lithium and MMAE. <b>Results:</b> We found that MMAE administration leads to loss of peripheral sensitivity and cognitive impairment and lithium prevents both central and peripheral neuropathies induced by chemotherapy, without affecting the antitumor activity of MMAE.
DOI: 10.6084/m9.figshare.28184603.v1
title: Citation database.xlsx

description: Citation database - contain citations for the following publication: "A taxonomy has been developed for outcomes in medical research to help improve knowledge discovery".
DOI: 10.6084/m9.figshare.23309459.v1
title: Fig_S6_OscillatoryRheology_SourceData

description: Amplitude sweeps and frequency sweeps of 1% (w/v) <strong>P5</strong> hydrogels crosslinked by CCL-1; CCL-4; CCL-16; CCL-64; CCL-256; or without CCL.
DOI: 10.6084/m9.figshare.9764942.v2
title: MACCROBAT

description: This ZIP-compressed file contains 200 source documents (in plain text, on sentence per line) and 200 annotation documents (in <i>brat </i>standoff format). Documents are named using PubMed document IDs, e.g. "15939911.txt" contains text from the document "A young man with palpitations and Ebstein's anomaly of the tricuspid valve" by Marcu and Donohue. Text is from PubMed Central full-text documents but has been edited to include only clinical case report details. All annotations were created manually.<br>"MACCROBAT2020" is the second release of this dataset, following "MACCROBAT2018". The consistency and format of annotations has been improved in the newest version.
DOI: 10.6084/m9.figshare.19425656.v1
title: COMSOL project file for CED simulation - Catheter tip outside tumour

description: Baseline tumour microenvironment conditions (Hydraulic conductivity of the tumour interstitial space, k=2×10<sup>-13</sup> m<sup>2</sup>/(Pa.s); Diameter of vessel wall pores, Do=100 nm).Catheter tip is located outside the tumour region.<br>
DOI: 10.6084/m9.figshare.26525734.v2
title: Meta-synthesis reveals interconnections among apparent drivers of insect biodiversity loss - Data and code

description: Here you will find all the data files and the R script needed to reproduce the figures in the article "Meta-synthesis reveals interconnections among drivers of insect biodiversity loss." R scripts, data for figures and analysis are contained in the zip folder "data_share.zip."Code and data for shiny app are found in "shiny.zip."
DOI: 10.15468/dl.nede3w
title: Occurrence Download

description: A dataset containing 2492080 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Curculionidae"
 ]
}

 The dataset includes 2492080 records from 2672 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009410-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/78q-8hn-5fz
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tg4-dwq-3y9
title: †Tentaculites Schlotheim, 1820

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h4g-d1d-f2t
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sxc-wmf-l8a
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/04t-exq-4r4
title: Tubipora rubeola Quoy & Gaimard, 1833

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vsx-hk3-flh
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jtn-hac-lej
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l2w-kvp-0jx
title: †Didymites angustilobatus (Hauer, 1846)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tcn-3zf-krm
title: Arcestes

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/92y-h1d-m40
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t58-be0-vzf
title: Anthozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2sn-ap1-waw
title: Distichites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/axj-wdl-k99
title: †Anasibirites multiformis Welter, 1922

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m9d-8mf-m3v
title: †Polymesoda convexa (Brongniart, 1822)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/205-1r1-kss
title: Rhynchonellata Williams, Carlson, Brunton, Holmer & Popov, 1996

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4v6-x9a-h6m
title: †Gryphaea Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7az-pga-94g
title: Capulus Montfort, 1810

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pjv-yny-w07
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gqe-sxt-y5b
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nef-6qj-v2n
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0sp-b03-nb5
title: Cardita Bruguière, 1792

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w1g-lmc-1q3
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6hn-4bf-4d5
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m6a-le7-nmc
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tp9-471-1aj
title: †Ancilla paeteli K. Martin, 1914

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4lc-wle-9bg
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qpe-lxl-p75
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vk0-ll8-nvh
title: Oppelia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/81h-jx9-hka
title: †Elrathia kingi (Meek, 1870)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vgj-pd9-kdz
title: †Dosinia boettgeri K. Martin, 1879

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b6k-3b7-hlq
title: †Rhynchonella Fischer de Waldheim, 1809

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dsh-n8m-qn8
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wjl-fz6-vjj
title: Arcestes

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w0h-1wh-3l8
title: †Cyrtospirifer Nalivkin in Fredericks, 1924

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wnf-jjj-db1
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p57-7hp-2e6
title: †Spirifer Sowerby, 1818

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pvb-alh-byt
title: Idmonea Lamouroux, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.amkmrr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eucalyptus camaldulensis",
 "Country is Albania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018240-250811113504898/datasets/export for details.
DOI: 10.3535/tc1-9aq-wz4
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/twj-l0f-zln
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.6xzrca
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eucalyptus camaldulensis",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 16 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018242-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/hjd-npm-tkq
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rq5-naq-erp
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ae2-6mx-afd
title: Sirenites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.rnpzq9
title: Occurrence Download

description: A dataset containing 13105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "TaxonKey is Apatura iris"
 ]
}

 The dataset includes 13105 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017693-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30491150.v1
title: A molecular docking and glycoinformatics approach reveals viral NS4A–human Sec61G interaction in Zika/Dengue infections

description: Zika (ZIKV) and Dengue virus (DENV) are transmitted to humans via Aedes mosquitoes, collectively infecting approximately 400 million individuals annually. Both viruses replicate on the endoplasmic reticulum membrane, where the NS4A protein serves as a key component of the viral replication complex and mediates interactions with the host Sec61G protein. Although host glycosylation enzymes have been reported to interact with NS4A, the three-dimensional structure of NS4A, potential glycosylation sites, precise interaction interfaces with Sec61G, and the functional role of glycosylation in these interactions remain largely unknown. This study aims to characterize the molecular determinants of NS4A – Sec61G interactions to provide insights into virus-host interactions. Structures of NS4A proteins were predicted via molecular modeling. Glycosylation sites were identified using glycoinformatics analyses, and NS4A – Sec61G interactions were assessed using three distinct molecular docking programs to ensure reliability and cross-validation of predicted binding modes. Glycosylation analysis revealed that only NS4A from ZIKV contains O-glycosylation sites. Docking simulations highlighted Arg127 in NS4A ZIKV, and Arg76 and Glu124 in NS4A DENV as critical residues potentially mediating stable interactions with Sec61G. These residues likely play essential roles in NS4A – Sec61G interactions, and their identification may contribute to the development of effective therapeutic strategies targeting both viral and host factors.