cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fsbgst
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Theloderma horridum (Boulenger, 1903)"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040129-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nxrgfp
title: Occurrence Download

description: A dataset containing 126 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dendrosenecio cheranganiensis (Cotton & Blakelock) E.B.Knox"
 ]
}

 The dataset includes 126 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021053-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1xhsm0
title: Occurrence Download

description: A dataset containing 87471 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-122.493438 37.811140,-122.493438 37.785096,-122.441940 37.785096,-122.441940 37.811140,-122.493438 37.811140))"
 ]
}

 The dataset includes 87471 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008922-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nq5bqc
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bulbophyllum bittnerianum Schltr."
 ]
}

 The dataset includes 23 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072151-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xmba5n
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dendrobium vandifolium Finet"
 ]
}

 The dataset includes 123 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021039-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.elqmq5
title: Occurrence Download

description: A dataset containing 1047 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus fabri Hance"
 ]
}

 The dataset includes 1047 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008922-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kf4dp7
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brandisia scandens Bonati"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072171-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x4u5q8
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dendrobium braianense Gagnep."
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021038-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8waz5u
title: Occurrence Download

description: A dataset containing 1078353 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Oreochromis niloticus (Linnaeus, 1758), Cyprinus carpio Linnaeus, 1758, Mugil cephalus Linnaeus, 1758, Clarias gariepinus (Burchell, 1822), Sparus aurata Linnaeus, 1758, Dicentrarchus labrax (Linnaeus, 1758), Argyrosomus regius (Asso, 1801), Bagrus bajad (Forsskål, 1775), Anguilla anguilla (Linnaeus, 1758))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1078353 records from 1046 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021049-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.obd7dq
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Limonium ovalifolium (Poir.) Kuntze",
 "DatasetKey is Cartografía de vegetación a escala de detalle 1:10.000 de la masa forestal de Andalucía"
 ]
}

 The dataset includes 31 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009687-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.axg746
title: Occurrence Download

description: A dataset containing 5754 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Achillea collina (Wirtg.) Becker ex Heimerl",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5754 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068791-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.deqvnn
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Inga unica Barneby & J.W.Grimes"
 ]
}

 The dataset includes 83 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0299366-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xpyg1n
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hypsiboas wavrini (Parker, 1936)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 25 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009687-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.35qekg
title: Occurrence Download

description: A dataset containing 379 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dichaea cogniauxiana Schltr."
 ]
}

 The dataset includes 379 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0156576-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xxp22g
title: Occurrence Download

description: A dataset containing 139 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Antidesma pleuricum Tul."
 ]
}

 The dataset includes 139 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008843-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ga2e7m
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Randia ciliolata C.Wright"
 ]
}

 The dataset includes 34 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004171-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gy207f
title: Occurrence Download

description: A dataset containing 1098925 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Larus marinus Linnaeus, 1758",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1098925 records from 213 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009687-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qwtv6c
title: Occurrence Download

description: A dataset containing 1871 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arenaria conimbricensis Brot."
 ]
}

 The dataset includes 1871 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012968-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e7kbek
title: Occurrence Download

description: A dataset containing 8247272 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Psittaciformes"
 ]
}

 The dataset includes 8247272 records from 662 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0251171-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kakofn
title: Occurrence Download

description: A dataset containing 2507584 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hirundo rustica"
 ]
}

 The dataset includes 2507584 records from 780 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009687-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dsg9cv
title: Occurrence Download

description: A dataset containing 313 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Observation.org, Nature data from around the World",
 "Geometry POLYGON((25.79812 37.42572,26.52306 37.42572,26.52306 37.77232,25.79812 37.77232,25.79812 37.42572))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 313 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005658-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jausu6
title: Occurrence Download

description: A dataset containing 180481 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-73.4697 6.82785,-73.35847 6.82785,-73.35847 6.92441,-73.4697 6.92441,-73.4697 6.82785))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 180481 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005651-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kppf2a
title: Occurrence Download

description: A dataset containing 14682 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Russula nobilis Velen."
 ]
}

 The dataset includes 14682 records from 227 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005657-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p9e6iziz
title: Geochemistry of ferromanganese crusts, nodules, and hydrothermally altered rocks from the Arctic Ocean

description: Ferromanganese crusts, nodules, and hydrothermally altered rocks were collected via dredge within the Amerasia Basin in the Arctic Ocean during USCGC icebreaker Healy cruises HLY0805, HLY0905, and HLY1202 in 2008, 2009, and 2012 respectively. Dredged samples were donated and sent to USGS for subsampling and major and trace element geochemical analyses. Major and trace element data as well as location information (latitude, longitude, depth) for each sample are provided here.
DOI: 10.15468/dl.h8ypy9
title: Occurrence Download

description: A dataset containing 85973 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tetrigidae",
 "Year 2010-2025"
 ]
}

 The dataset includes 85973 records from 1181 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005659-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34943/62a8ee4f-d9e8-4fb9-b967-9d52c9f1183b
title: Cascadia Basin Bottom Pressure Recorder Deployed 2011-09-17

description: The NRCan Bottom Pressure Recorder 8B was deployed on 2011-09-17 at Cascadia Basin. Cascadia Basin is located in the abyssal plain of the Pacific Ocean. At this location, hydrologic conditions in sediment-sealed igneous crust, Tsunami propagation, cool-water deep-sea microbes, and abyssal plain ecosystems are observed. This device is a Bottom Pressure Recorder. Bottom Pressure Recorders (BPR) are instruments that can detect small changes in pressure on the seafloor. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/083a3012-3bcf-49df-b1c8-194834585eb5
title: Cascadia Basin Bottom Pressure Recorder Deployed 2015-09-05

description: The NRCan Bottom Pressure Recorder 8B was deployed on 2015-09-05 at Cascadia Basin. Cascadia Basin is located in the abyssal plain of the Pacific Ocean. At this location, hydrologic conditions in sediment-sealed igneous crust, Tsunami propagation, cool-water deep-sea microbes, and abyssal plain ecosystems are observed. This device is a Bottom Pressure Recorder. Bottom Pressure Recorders (BPR) are instruments that can detect small changes in pressure on the seafloor. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.5281/zenodo.14773327
title: Boundary conditions for ED2 simulations for the Brazilian Amazon, initialised with airborne laser scanning

description: This data set contains a series of files to run the ED2 model for the configuration described in the following manuscript:

Longo, M., M. Keller, L. M. Kueppers, K. Bowman, O. Csillik, A. Ferraz, P. R. Moorcroft, J. P. Ometto, B. S. Soares-Filho, X. Xu, M. L. F. de Assis, E. B. Görgens, E. J. L. Larson, J. F. Needham, E. M. Ordway, F. R. S. Pereira, E. Rangel Pinagé, L. Sato, L. Xu and S. Saatchi. Degradation and deforestation increase the sensitivity of the Amazon Forest to climate extremes. In review.

The compressed files contains a folder structure containing the following sub-folders:



thermal_sums. This has information for cold-deciduous phenology. Not applied in tropical forest simulations, but the files are required

soil_data. These contain data sets used to describe texture (texture), depth to bedrock (depth), colour (colour) and a legacy data set temp+moist that is not used by ED2.

veget_data. This data set  used to define the land/sea mask in fully coupled ED2-BRAMS simulations. These are not used by ED2 in the analysis presented in the paper, they are provided here for completeness only.

lcluc_scenarios. This data set provides the transition matrices for the land cover and land use change scenario in the spin up of the Degradation simulation described in the manuscript.

met_driver. This data set provides the meteorological drivers for the simulations. Important. For using it, you must manually edit the paths in file WFDE5_SOUTHAM_CHIRPS_HEADER, located in met_driver/WFDE5/WFDE5_SOUTHAM_CHIRPS
DOI: 10.5281/zenodo.14773328
title: Boundary conditions for ED2 simulations for the Brazilian Amazon, initialised with airborne laser scanning

description: This data set contains a series of files to run the ED2 model for the configuration described in the following manuscript:

Longo, M., M. Keller, L. M. Kueppers, K. Bowman, O. Csillik, A. Ferraz, P. R. Moorcroft, J. P. Ometto, B. S. Soares-Filho, X. Xu, M. L. F. de Assis, E. B. Görgens, E. J. L. Larson, J. F. Needham, E. M. Ordway, F. R. S. Pereira, E. Rangel Pinagé, L. Sato, L. Xu and S. Saatchi. Degradation and deforestation increase the sensitivity of the Amazon Forest to climate extremes. In review.

The compressed files contains a folder structure containing the following sub-folders:



thermal_sums. This has information for cold-deciduous phenology. Not applied in tropical forest simulations, but the files are required

soil_data. These contain data sets used to describe texture (texture), depth to bedrock (depth), colour (colour) and a legacy data set temp+moist that is not used by ED2.

veget_data. This data set  used to define the land/sea mask in fully coupled ED2-BRAMS simulations. These are not used by ED2 in the analysis presented in the paper, they are provided here for completeness only.

lcluc_scenarios. This data set provides the transition matrices for the land cover and land use change scenario in the spin up of the Degradation simulation described in the manuscript.

met_driver. This data set provides the meteorological drivers for the simulations. Important. For using it, you must manually edit the paths in file WFDE5_SOUTHAM_CHIRPS_HEADER, located in met_driver/WFDE5/WFDE5_SOUTHAM_CHIRPS
DOI: 10.5066/p95pgqz2
title: Biogeochemical Data from Field Samples and Laboratory Experiments, Boulder Creek Watershed, Colorado (2019-2023)

description: Biogeochemical processes are key drivers of chemical solubility and mobilization. Understanding these processes will lead to improved predictive capabilities and may aid with watershed management decisions. This data release presents results from the Boulder Creek, Colorado watershed, including analyses of water and sediment. From April to August 2019, water samples were collected weekly at 2 sites along Boulder Creek and 4 tributary sites draining into Boulder Creek. In August 2022, water samples were collected every 2 hours for 34 hours at 2 sites on Boulder Creek (upstream and downstream of the city of Boulder). Samples for both studies were analyzed for major cations and anions, dissolved organic carbon, UV absorbance, total dissolved nitrogen, ammonium, nitrate, alkalinity, trace metals, water isotopes, and field parameters including dissolved oxygen, pH, water temperature, and specific conductance. In August 2022, bed sediment (0-3 cm depth) samples were collected at 8 sites along Boulder Creek. The sediment was dried, sieved, pulverized, digested, and then analyzed for metals, total carbon, sulfur, and carbonate. In 2021 and 2022, laboratory incubations of sediment and stream water were conducted to assess how different oxidation-reduction conditions affect metal and nutrient concentrations. Sediment cores (0-5 cm and 5-10 cm depth) and surface water were collected from Boulder Creek at three sites upstream, within, and downstream of the city of Boulder. Samples were collected from incubation reactors over time and analyzed for major cations and anions, dissolved organic carbon, UV absorbance, total dissolved nitrogen, ammonium, nitrate, trace metals, total arsenic, pH, and specific conductance. Sediments used for the incubations were further characterized by sequential extractions with hydroxylamine and dithionite and analyzed for major cations and trace metals.

Site information, soil characterization details, incubation preparation and biogeochemical nutrient data, sediment sequential extraction data, and water-quality data are presented in this data release as ten comma-separated values (.csv) formatted tables. A data dictionary file describes the data found in the .csv files. Method details and references are located in the metadata file Boulder Creek Watershed Data (2019-2023).xml.
DOI: 10.5281/zenodo.13905545
title: Examination of 6 and 12 Month Follow-up of Calcium Hydroxide and Calcium Silicate Materials Used in Direct and Indirect Pulp Capping

description: This dataset includes data evaluating the clinical and radiographic 6 and 12-month treatment success of calcium hydroxide and calcium silicate materials in indirect pulp therapy (IPT) and direct pulp capping (DPC) applications in teeth with deep dentin caries.
description: Supplementary Figure 1. Figure 1 presents the flow diagram for patient recruitment and selection.
description: Supplementary Table 1. Comparison of mean age according to groups of patients.
description: Supplementary Table 2. Success Rates in Indirect Pulp Treatment.
description: Supplementary Table 3. Comparison of treatments applied to patients in 2 different time periods.

 
description: Supplementary Table 4. Success rates of different pulp capping materials applied to DPC.
DOI: 10.5281/zenodo.13905546
title: Examination of 6 and 12 Month Follow-up of Calcium Hydroxide and Calcium Silicate Materials Used in Direct and Indirect Pulp Capping

description: This dataset includes data evaluating the clinical and radiographic 6 and 12-month treatment success of calcium hydroxide and calcium silicate materials in indirect pulp therapy (IPT) and direct pulp capping (DPC) applications in teeth with deep dentin caries.
DOI: 10.5281/zenodo.13919768
title: Examination of 6 and 12 Month Follow-up of Calcium Hydroxide and Calcium Silicate Materials Used in Direct and Indirect Pulp Capping

description: This dataset includes data evaluating the clinical and radiographic 6 and 12-month treatment success of calcium hydroxide and calcium silicate materials in indirect pulp therapy (IPT) and direct pulp capping (DPC) applications in teeth with deep dentin caries.
DOI: 10.5281/zenodo.13937997
title: Examination of 6 and 12 Month Follow-up of Calcium Hydroxide and Calcium Silicate Materials Used in Direct and Indirect Pulp Capping

description: This dataset includes data evaluating the clinical and radiographic 6 and 12-month treatment success of calcium hydroxide and calcium silicate materials in indirect pulp therapy (IPT) and direct pulp capping (DPC) applications in teeth with deep dentin caries.
description: Supplementary Figure 1. Figure 1 presents the flow diagram for patient recruitment and selection.
description: Supplementary Table 1. Comparison of mean age according to groups of patients.
description: Supplementary Table 2. Success Rates in Indirect Pulp Treatment.
description: Supplementary Table 3. Success Rates in Direct Pulp CappingTreatment.
description: Supplementary Table 4. Comparison of treatments applied in different time periods.