cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/5zh-xsw-trz
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qt7-v0l-v9l
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0lv-raj-dl6
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sjj-3hk-wgd
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21926407.v1
title: Complex refractive index of crystalline quartz particles from UV to thermal infrared

description: Crystalline quartz is an important element of many materials and one of the major compounds of mineral dust. Thus, knowledge of its optical properties is essential for many applications, in particular for remote sensing techniques. However, despite the fact that crystalline quartz has been an object of study for many years using various experimental approaches, its optical properties and in particular its complex refractive indices (CRI) remain uncertain. The focus of this investigation is the determination of a new set of CRI of crystalline quartz particles retrieved from a methodology which has already demonstrated its efficiency on pure amorphous materials and volcanic ashes. The experimental set-up allows recording simultaneously size distribution (from 15 nm to 20 µm) of airborne particles and extinction spectra over a wide continuous spectral range from thermal infrared (650 cm<sup>−1</sup>) to UV (40,000 cm<sup>−1</sup>) with high spectral resolution (up to 0.5 cm<sup>−1</sup>). By associating these measurements and a numerical procedure coupling scattering theories, the single subtractive Kramers-Kronig relation, and an optimal estimation method in an iterative process, we precisely determine the real and imaginary parts of the CRI of crystalline SiO<sub>2</sub> with mean values of the uncertainties of 2.5% and 1.7%, respectively. Moreover, the use of these CRIs allows to simulate an extinction spectrum of another quartz sample very well, which shows their suitability as well as the good reproducibility of the whole process.
DOI: 10.3535/8dj-h1n-132
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qwe-emw-hs7
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12095010.v1
title: Geochemistry and δ11 B evolution of tourmaline from tourmalinite as a record of oceanic crust in the Tonian Ibaré ophiolite, southern Brasiliano Orogen

description: Abstract The isotopic and geochemical evolution of tourmaline constrain the processes of paleo-oceanic lithosphere in ophiolites. The Brasiliano Orogen is a major structure of South America and requires characterization for the understanding of Gondwana supercontinent evolution. We made a pioneering investigation of tourmaline from a tourmalinite in the Ibaré ophiolite by integrating field work with chemical analyses of tourmaline by electron microprobe (EPMA) and δ11B determinations via laser ablation inductively coupled plasma mass spectrometer (LA-ICP-MS). Remarkably massive tourmalinite (&gt;90 vol.% tourmaline, some chlorite) enclosed in serpentinite has homogeneous dravite in chemical and isotopic composition (δ11B = +3.5 to +5.2‰). These results indicate a geotectonic environment in the altered oceanic crust for the origin of the tourmalinite. This first δ11B characterization of tourmaline from tourmalinite sets limits to the evolution of the Neoproterozoic to Cambrian Brasiliano Orogen and Gondwana evolution.
DOI: 10.6084/m9.figshare.19165757.v1
title: Parental bonding in retrospect and adult attachment style: a comparative study between Spanish, Italian, and Japanese culture

description: Parental bonding in retrospect and adult attachment style: a comparative study between Spanish, Italian, and Japanese culture
DOI: 10.17632/y8wzfmcvtd
title: Geochemical Multi-element Database for Geotechnical Habitats

description: This study aims to explore the influence of parent rock mineral weathering on soil weathering processes and its intrinsic relationship with nutrient supply mechanisms through the regulation of soil physicochemical properties. The research indicates that the mineral composition of parent rocks significantly affects soil weathering intensity and nutrient characteristics. Specifically, the higher the ratio of easily weathered to resistant minerals (E/R) in the parent rock, the faster the weathering rate, the greater the soil weathering intensity, and the higher the clay content, leading to increased soil nutrient levels. There is a strong correlation between weathering characteristics and nutrient characteristics, with clay content being a core factor controlling soil nutrient supply.
DOI: 10.3535/d4s-p8c-c2c
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/v9v-txr-rwc
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28571141.v1
title: <b>Simplified 3D genome</b><b> and gap-less CC group </b><b><i>Oryza</i></b><b> genome reveal genetic dynamics of rice triploid lines from distant hybridization</b>

description: Intergeneric hybridization and domestication breeding is an efficient means for utilizing wild rice germplasm resources. In this study, we constructed gap-less genome assemblies for two CC, two BBCC and one CCDD wild rices to explore the role of the C subgenome in rice diversification. Furthermore, we assembled the genome of a cultivated rice (AA) and further developed A/C hybrids with enhanced resistance to BPH using an efficient hybrid embryo rescue system.
DOI: 10.3535/1cm-ffy-a3f
title: Chalcopyrite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nky-jp6-vja
title: Ilmenorutile

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27759558.v1
title: 从 2000 年到 2020 年，全球红树林以 1 公里的分辨率积累了碳储量

description: 该数据集以 1 公里的分辨率捕获了 2000 年至 2020 年全球红树林累积碳储量，并以世界墨卡托投影的单波段 GeoTIFF 格式公开提供。数据遵循标准化的命名约定：“input_name_yr.tif”、“process_name_yr.tif”和“out-put_name_yr.tif”。关于这些文件名，'input' 是指准备好的 input data;'process' 表示计算过程中生成的中间数据;”产出”是指全球红树林的累积碳储存量;'Name' 表示数据类型，'yr' 指定数据的年份。例如，“input_agb_2000.tif”对应于 Simard 等人（1 年）在 2000 年为红树林提供的 2019 公里分辨率全球地上生物量数据;”process_G_0007.tif“表示 2000 年至 2007 年全球红树林的总累积生物量（分辨率为 1 公里）;”output_carbon_0020.tif“代表本研究的成果，以 2000 公里的分辨率表示 2020-1 年全球红树林累积碳储存量。<br>
DOI: 10.3535/ngn-z6w-5c4
title: Magnetite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qtl-t1t-den
title: Limonite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/v5c-y0x-m8a
title: Minerals

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22705726.v1
title: Figure_5_replicates

description: <em>(G-I) Viral RNA was extracted from viral stocks (G), Xrn1 knock out A549 cells 16 hours post-infection (H), or 48-hour supernatants from infected MDCK cells (H). Viruses analyzed: </em> <em>WT PR8 and PR8-PA(∆X) strains with no insert, or PR8 with WT or mutant </em>STOML2<em> sequences inserted in the WT PR8 or PR8-PA(∆X) background. Mutant </em>STOML2<em> sequences contain the GCUG to UAGC mutation preventing PA-X cleavage. Viral RNA was reverse-transcribed and PCR-amplified using primers shown as black arrows in F-G to determine whether the </em>STOML2<em> sequences were retained.</em> <em>R# --&gt; replicate number; LG### --&gt; experiment number</em> <em>.sgd are the original source files obtained with the Syngene Imager</em>
DOI: 10.6084/m9.figshare.24347102.v2
title: Efficient Model-Free Subsampling Method for Massive Data

description: Subsampling plays a crucial role in tackling problems associated with the storage and statistical learning of massive datasets. However, most existing subsampling methods are model-based, which means their performances can drop significantly when the underlying model is misspecified. Such an issue calls for model-free subsampling methods that are robust under diverse model specifications. Recently, several model-free subsampling methods have been developed. However, the computing time of these methods grows explosively with the sample size, making them impractical for handling massive data. In this article, an efficient model-free subsampling method is proposed, which segments the original data into some regular data blocks and obtains subsamples from each data block by the data-driven subsampling method. Compared with existing model-free subsampling methods, the proposed method has a significant speed advantage and performs more robustly for datasets with complex underlying distributions. As demonstrated in simulation experiments, the proposed method is an order of magnitude faster than other commonly used model-free subsampling methods when the sample size of the original dataset reaches the order of 10<sup>7</sup>. Moreover, simulation experiments and case studies show that the proposed method is more robust than other model-free subsampling methods under diverse model specifications and subsample sizes.
DOI: 10.6084/m9.figshare.4308716.v1
title: Harmonized Tariff Schedule of the United States

description: Harmonized Tariff Schedule of the United States
DOI: 10.3535/9h2-7f5-y65
title: Minerals

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/j3h-5zh-v2y
title: Epsomite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25562913.v1
title: Opsin sequences

description: All the opsin sequences used in the study (Complete, Incomplete or Pseudogene). Subfamily of each sequence can be retrieved in the csv file 'ALL_opsins_classification'
DOI: 10.3535/2y8-kh4-s6e
title: Minerals

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xqb-nrs-esg
title: Hornblende

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19406720.v1
title: Data and Analysis Scripts

description: This collection contains the data and analysis scripts for the southbound migration quantile analysis performed in "Quantifying phenological landmarks of migration shows non-uniform use of the Caribbean by shorebirds" in Ecology and Evolution by Cañizares, Edwards, and Reed. <br> Please see readme.txt for full details. <br> Current methods are insufficient to characterize phenology of passage migrants with potentially complex migration curves, particularly when some individuals may be present outside of the migration periods. Here we present a novel method that leverages a well-established statistical approach (generalized additive models) to systematically identify migration phenology for complex passage migrant species with individuals that remain beyond migration. Our method identifies the active migration period using derivatives of a fitted GAM, and then calculates phenology metrics based on quantiles of that migration period. This enabled us to estimate dates of migration landmarks and identify patterns of southbound migration in a suite of North American shorebird species as they travel through different regions in the Caribbean.
DOI: 10.6084/m9.figshare.6179060.v3
title: Data & analysis script for "Reward associations do not explain transitive inference performance in monkeys" preprint

description: Event counts for Experiments 1 and 2, as well as the R script that analyzes the data using Stan.
DOI: 10.3535/6ff-zch-6ww
title: Annabergite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/lm0-7gh-18m
title: Quartz

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0kr-0qg-sb7
title: Braunite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hbx-fw0-3k5
title: Manganite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/azs-6tp-bzx
title: Paragneiss

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/lz6-94l-dmg
title: Boulangerite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/9np-ys9-mwm
title: Hornfels

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z7p-e4k-n65
title: Paragneiss

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19351700.v1
title: Untrimmed and trimmed alignments (and selected alignments depicting N-terminal extensions) and phylogenetic trees in nexus and pdf format for plastid-associated and other proteins in eleftherids, Ichthyodinida and psammosids.

description: The dataset contains alignments (untrimmed and trimmed) and the corresponding phylogenetic trees (in nexus and pdf format) for plastid metabolic pathways (isoprenoid and FeS cluster biosynthesis; heme biosynthesis) and the lysine biosynthesis pathway enzyme DapL in eleftherids, Ichthyodinida and psammosids. For proteins with N-terminal extensions in eleftherids and/or Ichthyodinida, manually curated alignments to showcase putative plastid-targeting sequences are included. For selected heme proteins, curated alignments for the plastidial and cytosolic clades are included. The file names include the name of the protein and, in case of alignment (*.fasta) files, it is indicated whether the alignment is untrimmed or trimmed; for the tree files (*.tre and *.tre.pdf) the file name contains the protein name and the name of the model used for tree reconstruction.The untrimmed alignments have been filtered using PREQUAL with default options, before being aligned with MAFFT G-INS-i using the VSM option (--unalignlevel 0.6). The alignments were then subjected to Divvier using the -mincol 4 and the -divvygap option before trimming with trimAl (-gt 0.01). Trees were calculated with IQ-TREE, using the -mset option to restrict model selection to LG for ModelFinder, while branch support was assessed with 1000 ultrafast bootstrap replicates.
DOI: 10.3535/lw9-psk-bbq
title: Gneiss

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zc7-yfr-6ml
title: Minerals

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.6803885.v1
title: De novo assembled contigs from metatranscriptomes of pools of dog whelk, starfish, sea anemone, sponge, earthworm and Fucus species.gz

description: Raw de novo-assembled contigs from the metatranscriptomes of each of six species pools; Nucella lapillus (Dog whelk), Lumbricus and Amynthas spps. (Earthworms), Asterias rubens (Common starfish) Halichondria panacea (Breadcrumb sponge), Actinia equina (beadlet anemone), Fucus serratus (Serrated wrack).<br><br>From https://www.biorxiv.org/content/early/2017/07/21/166488<br>
DOI: 10.3535/bph-y9h-b8p
title: Minerals

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/keh-283-1fw
title: Greenschist

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5jx-c3z-kdz
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/k1j-fp2-ct1
title: Hornblende schist

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19387442.v4
title: Murray et al 2022 - Antibacterial effects of propolis and brood comb extracts on the causative agent of European Foulbrood (Melissococcus plutonius) in honey bees (Apis mellifera) - Supplemental Data and Figures

description: "Murray et al 2022 - Suppl. data": OD<sub>600</sub> readings of wells containing bacteria and treatment (od) or bacteria and solvent (od_solvent) at the mid-growth phase (tmid; as determined by a standard growth control) over a 12-hour period. The difference between these two OD600 readings was recorded (od_diff) to account for the bacterial inhibition by the 70% ethanol solvent. Controls for each replicate included the aforementioned solvent control (solv.ctrl), untreated standard growth control (avg.std), and a positive control of antibiotic oxytetracycline hydrochloride (avg.otc). Each treatment extract was subject to a series of eight two-fold dilutions. Diluted treatments are indicated by numbers, where honey.1 would be the crude extract and honey.8 would be the most dilute. <br> "Murray et al 2022 - ecoli analysis; ssaprophyticus analysis; mplutonius analysis": R scripts for MIC analysis of honey comb extract, brood comb extract, and propolis ectract on three bacterial species: E. coli, S. saprophyticus, and M. plutonius. <br> "Raw data" zip files: Zip files for each bacterium tested. Files contain raw data for all 96-well plates in which bacteria were treated with honey comb extract, brood comb extract, or propolis extract. Files also contain associated R scripts in which the mid-log phase was determined for each plate. <br> "Murray et al 2022 - Suppl. - Ecoli; Ssaprophyticus; Mplutonius raw curves": Each pdf file contains raw growth curves for either E. coli, S. saprophyticus, or M. plutonius when treated with honey comb extract, brood com extract, propolis extract, as well as controls (positive control, solvent control, standard growth control, and sterility control).
DOI: 10.6084/m9.figshare.21316623.v3
title: Table1-Table 6.xlsx

description: Table1 Samples for geochemical,Sr-Nd isotopic and mineral analysis. Tbale 2 Major,trace elements and Sr-Nd isotopic analysis data. Table 3. Composition analyses of plagioclase phenocryst and the glass of Laofangzi black bands Table 4. Composition analyses of Pyroxene and Olivine phenocrysts Table 5. Pre-eruptive temperature and pressure of Laofangzi scoria cone and Laohudong lava flow Table 6. Pre-eruptive temperature and pressure of Laofangzi scoria cone and Laohudong lava flow
DOI: 10.3535/7ep-j8c-aqj
title: Quartzite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jpd-tn9-g4s
title: Muscovite schist

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19368146.v2
title: Native RNA sequencing in fission yeast reveals frequent alternative splicing isoforms

description: Spom_dRNA_cleanreads.fa.gz: Reads of dRNA after cleaning with Illumina reads and TranscriptClean. <br> Spom_dRNA_sorted.bam: Alignment of clean reads to S. pombe genome. <br> Spom_dRNA_Stringtie_transcriptome.gtf: Transcript assemblies and genomic coordinates generated by StringTie from dRNA reads. <br> Spom_dRNA_Stringtie_transcriptome.fa: Sequences extracted from the annotation file generated by StringTie from dRNA reads. <br> Spom_isoforms.gtf: Annotation file for genes with alternative isoforms not annotated in Pombase. <br> Spom_novel_transcripts.gtf: Annotation file for novel transcripts not annotated in Pombase. <br> Supplemental_Table_S9.tsv: Information of translated ORFs in ncRNAs. <br> Spom_dRNA_5UTR_Stringtie.gtf: Genomic coordinates of new 5'UTR regions in S. pombe. <br> Spom_dRNA_5UTR_Stringtie.fa: Sequences extracted from the annotation files of 5'UTR regions. <br> Spom_dRNA_3UTR_Stringtie.gtf: Genomic coordinates of new 3'UTR regions in S. pombe. <br> Spom_dRNA_3UTR_Stringtie.fa: Sequences extracted from the annotation files of 3'UTR regions. <br> Supplemental_Table_S8.xlsx: Information on the transcripts identified with dRNA, new isoforms, novel transcripts and new UTR regions.
DOI: 10.3535/ngl-be2-wxe
title: Agate

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19294649.v1
title: EFR_sequences_aa_muscle.fa

description: Amino acid sequences of EFR homologs aligned using MUSCLE
DOI: 10.6084/m9.figshare.22900337.v1
title: Modelling Debt to GDP Ratios for Canada, Japan and The U.K.

description: With the global impact of the 2020 Novel Coronavirus (COVID-19), there has been a surge in public debt and uncertainty in the global economy. As the likelihood of a recession and a higher debt for Canada increases, the utility of a forecasting model is a realistic choice to both predict and determine optimal fiscal decisions for the government. This paper seeks to ratify existing historical trends in three developed economies (Canada, Japan, and the U.K.) as well as offer a time series forecast for the proceeding five years’ debt to GDP ratio. As per the International Monetary Fund (IMF), a limit of 60% in debt to GDP ratio was employed to measure how far off these three countries were from a considerably recoverable amount of debt. The time series forecast that the U.K. will drop to 65.436% by 2025, however, Japan and Canada will continue to accumulate debt to 254.3851% and 80.107% respectively.
DOI: 10.3535/6ac-lw7-w48
title: marble

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zme-4br-c90
title: Dunite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22591558.v2
title: whey protein of yak milk

description: A total of 632 proteins were found, and detailed information of these quantified proteins is shown in Supplemental Table S1. The detail of DEP is shown in Supplemental Table S2.<br> <br>
DOI: 10.3535/g94-3hk-76b
title: Hornblende

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tqb-ytf-k23
title: Pitchstone

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11793816.v2
title: Metadata record for: China CO2 emission accounts 2016-2017

description: This dataset contains key characteristics about the data described in the Data Descriptor China CO2 emission accounts 2016-2017. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.4272506.v1
title: Tissue Classification Data

description: This data is part of the DIPY (Diffusion Imaging in Python) Tissue Classification project. It is a T1-weighted MRI image used as an example file to perform tissue classification and separate between tissue types. The T1-weighted image comes in a raw and a denoised version. It also contains an Anisotropic Power map from the same subject for the purpose of also testing segmentation algorithms on it. Total of three nifti images.
DOI: 10.3535/7e9-x4l-53y
title: Amphibole schist

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/c1x-690-nwn
title: Muscovite gneiss

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.