cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26583258
title: Additional file 4 of Restoration of aberrant gene expression of monocytes in systemic lupus erythematosus via a combined transcriptome-reversal and network-based drug repurposing strategy

description: Supplementary Table 4. List of Compounds that are predicted to reverse the monocytes signature in SLE, derived from the L1000CDS2 platform-based drug repurposing analysis.
DOI: 10.6084/m9.figshare.26583267.v1
title: Additional file 7 of Restoration of aberrant gene expression of monocytes in systemic lupus erythematosus via a combined transcriptome-reversal and network-based drug repurposing strategy

description: Supplementary Table 7. Topological analysis of the interaction network of Figure 3A
DOI: 10.6084/m9.figshare.26583273.v1
title: Additional file 9 of Restoration of aberrant gene expression of monocytes in systemic lupus erythematosus via a combined transcriptome-reversal and network-based drug repurposing strategy

description: Supplementary Table 9. Clinical parameters (including disease activity and concominant treatments) of the patients participated in the study. Abbreviations: MMF (mycophenolate-mofetil), AZA(azathioprine), GC(glucocorticoids), HCQ(hydroxychloroquine), CY(cyclophosphamide), ANA (anti-nuclear antibodies).
DOI: 10.6084/m9.figshare.26583255
title: Additional file 3 of Restoration of aberrant gene expression of monocytes in systemic lupus erythematosus via a combined transcriptome-reversal and network-based drug repurposing strategy

description: Supplementary Table 3. List of Compounds that are predicted to reverse the monocytes signature in SLE, derived from the CLUE platform-based drug repurposing analysis.
DOI: 10.6084/m9.figshare.26583273
title: Additional file 9 of Restoration of aberrant gene expression of monocytes in systemic lupus erythematosus via a combined transcriptome-reversal and network-based drug repurposing strategy

description: Supplementary Table 9. Clinical parameters (including disease activity and concominant treatments) of the patients participated in the study. Abbreviations: MMF (mycophenolate-mofetil), AZA(azathioprine), GC(glucocorticoids), HCQ(hydroxychloroquine), CY(cyclophosphamide), ANA (anti-nuclear antibodies).
DOI: 10.6084/m9.figshare.26583270
title: Additional file 8 of Restoration of aberrant gene expression of monocytes in systemic lupus erythematosus via a combined transcriptome-reversal and network-based drug repurposing strategy

description: Supplementary Table 8. Full list of DEGs of monocytes, derived from the comparison of SLE patients versus healthy control individuals, without cut-off values.
DOI: 10.6084/m9.figshare.26583276
title: Additional file 10 of Restoration of aberrant gene expression of monocytes in systemic lupus erythematosus via a combined transcriptome-reversal and network-based drug repurposing strategy

description: Supplementary Table 10. List of monocyte specific small molecule compounds, as identified via the iLINCS, CLUE io and L1000CDS2 platforms, in line with figure 1B.
DOI: 10.6084/m9.figshare.26583249
title: Additional file 1 of Restoration of aberrant gene expression of monocytes in systemic lupus erythematosus via a combined transcriptome-reversal and network-based drug repurposing strategy

description: Supplementary Table 1. List of the statistically significant differentially expressed genes (DEGs) resulting from the comparison of the monocytes from SLE patients versus healthy controls.
DOI: 10.6084/m9.figshare.26583255.v1
title: Additional file 3 of Restoration of aberrant gene expression of monocytes in systemic lupus erythematosus via a combined transcriptome-reversal and network-based drug repurposing strategy

description: Supplementary Table 3. List of Compounds that are predicted to reverse the monocytes signature in SLE, derived from the CLUE platform-based drug repurposing analysis.
DOI: 10.6084/m9.figshare.26583270.v1
title: Additional file 8 of Restoration of aberrant gene expression of monocytes in systemic lupus erythematosus via a combined transcriptome-reversal and network-based drug repurposing strategy

description: Supplementary Table 8. Full list of DEGs of monocytes, derived from the comparison of SLE patients versus healthy control individuals, without cut-off values.
DOI: 10.6084/m9.figshare.26583258.v1
title: Additional file 4 of Restoration of aberrant gene expression of monocytes in systemic lupus erythematosus via a combined transcriptome-reversal and network-based drug repurposing strategy

description: Supplementary Table 4. List of Compounds that are predicted to reverse the monocytes signature in SLE, derived from the L1000CDS2 platform-based drug repurposing analysis.
DOI: 10.6084/m9.figshare.26562034.v1
title: Additional file 9 of Genomic and immunogenomic analysis of three prognostic signature genes in LUAD

description: Additional file 9. Supplementary table 9. Gene expression and pathway activity result from GSCA.
DOI: 10.15468/dl.ugrhyq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((149.371128 -32.054821, 149.377866 -32.054821, 149.377866 -32.052575, 149.371128 -32.052575, 149.371128 -32.054821)), ((149.371128 -32.054821, 149.362145 -32.054821, 149.362145 -32.059313, 149.371128 -32.059313, 149.371128 -32.054821)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065424-240626123714530/datasets/export for details.
DOI: 10.15468/dl.jqj94p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((146.244976 -36.22527, 146.244976 -36.227516, 146.247222 -36.227516, 146.247222 -36.22527, 146.244976 -36.22527))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065425-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26562040
title: Additional file 11 of Genomic and immunogenomic analysis of three prognostic signature genes in LUAD

description: Additional file 11. Supplementary table 11. GDSC drug IC50 and expression table.
DOI: 10.6084/m9.figshare.26562022.v1
title: Additional file 5 of Genomic and immunogenomic analysis of three prognostic signature genes in LUAD

description: Additional file 5. Supplementary table 5. The gene expression survival and rickscore results of GSE11969.
DOI: 10.6084/m9.figshare.26562022
title: Additional file 5 of Genomic and immunogenomic analysis of three prognostic signature genes in LUAD

description: Additional file 5. Supplementary table 5. The gene expression survival and rickscore results of GSE11969.
DOI: 10.6084/m9.figshare.26562025
title: Additional file 6 of Genomic and immunogenomic analysis of three prognostic signature genes in LUAD

description: Additional file 6. Supplementary table 6. The gene expression survival and rickscore results of GSE42127.
DOI: 10.15468/dl.4hb3hk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.386849 -32.054821, 149.386849 -32.059313, 149.393586 -32.059313, 149.393586 -32.054821, 149.386849 -32.054821))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065426-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26562028.v1
title: Additional file 7 of Genomic and immunogenomic analysis of three prognostic signature genes in LUAD

description: Additional file 7. Supplementary table 7. The correlation between immune infiltration and rickscore.
DOI: 10.6084/m9.figshare.26562034
title: Additional file 9 of Genomic and immunogenomic analysis of three prognostic signature genes in LUAD

description: Additional file 9. Supplementary table 9. Gene expression and pathway activity result from GSCA.
DOI: 10.6084/m9.figshare.26562040.v1
title: Additional file 11 of Genomic and immunogenomic analysis of three prognostic signature genes in LUAD

description: Additional file 11. Supplementary table 11. GDSC drug IC50 and expression table.
DOI: 10.6084/m9.figshare.26562043
title: Additional file 12 of Genomic and immunogenomic analysis of three prognostic signature genes in LUAD

description: Additional file 12. Supplementary table 12. CCLE IC50 and MMP12 exprression table.
DOI: 10.6084/m9.figshare.26562049
title: Additional file 14 of Genomic and immunogenomic analysis of three prognostic signature genes in LUAD

description: Additional file 14. Supplementary table 14. Correlation between immunity and mRNA of target genes.
DOI: 10.15468/dl.qu796e
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((149.240872 -36.229761, 149.240872 -36.232007, 149.243118 -36.232007, 149.243118 -36.234253, 149.247609 -36.234253, 149.247609 -36.229761, 149.240872 -36.229761)), ((149.247609 -36.234253, 149.247609 -36.238745, 149.249855 -36.238745, 149.249855 -36.234253, 149.247609 -36.234253)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065427-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26562055
title: Additional file 16 of Genomic and immunogenomic analysis of three prognostic signature genes in LUAD

description: Additional file 16. Supplementary table 16. Correlation between immunity and methylation of target genes.
DOI: 10.15468/dl.drqm82
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((149.350916 -32.061558, 149.355408 -32.061558, 149.355408 -32.054821, 149.350916 -32.054821, 149.350916 -32.061558)), ((149.350916 -32.061558, 149.34867 -32.061558, 149.34867 -32.059313, 149.346424 -32.059313, 149.346424 -32.061558, 149.344179 -32.061558, 149.344179 -32.06605, 149.346424 -32.06605, 149.346424 -32.068296, 149.34867 -32.068296, 149.34867 -32.06605, 149.350916 -32.06605, 149.350916 -32.061558)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065428-240626123714530/datasets/export for details.
DOI: 10.15468/dl.vu8pw6
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Puya weberbaueri Mez"
 ]
}

 The dataset includes 69 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065429-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ftngfm
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.195956 -36.232007, 149.195956 -36.234253, 149.202693 -36.234253, 149.202693 -36.232007, 149.195956 -36.232007))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065430-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26562130
title: Additional file 3 of Artificially Selected Grain Shape Gene Combinations in Guangdong Simiao Varieties of Rice (Oryza sativa L.)

description: Additional file 3: Table S3. The allelic combinations of international indica accessions.
DOI: 10.6084/m9.figshare.26562133.v1
title: Additional file 4 of Artificially Selected Grain Shape Gene Combinations in Guangdong Simiao Varieties of Rice (Oryza sativa L.)

description: Additional file 4: Table S4. The allelic combinations of Guangdong Simiao varieties.
DOI: 10.6084/m9.figshare.26583384.v1
title: Additional file 1 of Identification of gametocyte-associated pir genes in the rodent malaria parasite, Plasmodium chabaudi chabaudi AS

description: Additional file 1: Table S1. Promoter sequences. Table S2. Integration primers. Table S3. QPCR primer sets. Table S4. QRTPCR.
DOI: 10.5518/191
title: Dataset associated with 'Simulation of photo-excited adenine in water with a hierarchy of equations of motion approach'

description: Simulation data of two- and three-level models of adenine in solution with a hierarchy of equations of motion approach.
DOI: 10.5517/ccdc.csd.cc20gkkm
title: CCDC 1861040: Experimental Crystal Structure Determination

description: Related Article: Papri Bhattacharya,  Zachariah M Heiden,  Geoffrey M Chambers,  Samantha I Johnson,  R. Morris Bullock,  Michael Thomas Mock|2019|Angew.Chem.,Int.Ed.|58|11618|doi:10.1002/anie.201903221
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dd.fk8xtz
title: GBIF derived dataset used in ‘Ceccarelli et al (2024). Vulnerability to climate change of cultivated and wild cacao in Ecuador. Climatic Change’

description: GBIF derived dataset used in ‘Ceccarelli et al (2024). Vulnerability to climate change of cultivated and wild cacao in Ecuador. Climatic Change’. This dataset was used together with other non-GBIF datasets to produce the full occurrence dataset for all tree and shrub species in Ecuador used in the target group approach for the suitability modelling in the article.
DOI: 10.6084/m9.figshare.26583399.v1
title: Additional file 3 of Integrated microbiome and metabolome analysis reveals novel urinary microenvironmental signatures in interstitial cystitis/bladder pain syndrome patients

description: Additional file 3: Table S3. Qualitative and Quantitative results of urinary metabolites in IC/BPS group and control group by positive ion mode.
DOI: 10.6084/m9.figshare.26583402
title: Additional file 4 of Integrated microbiome and metabolome analysis reveals novel urinary microenvironmental signatures in interstitial cystitis/bladder pain syndrome patients

description: Additional file 4: Table S4. Qualitative and Quantitative results of urinary metabolites in IC/BPS group and control group by negative ion mode.
DOI: 10.15468/dl.ghnw4h
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.404815 -32.054821, 149.404815 -32.059313, 149.395832 -32.059313, 149.395832 -32.061558, 149.400324 -32.061558, 149.400324 -32.06605, 149.407061 -32.06605, 149.407061 -32.054821, 149.404815 -32.054821))"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065431-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26562178.v1
title: Additional file 6 of Novel context-specific genome-scale modelling explores the potential of triacylglycerol production by Chlamydomonas reinhardtii

description: Additional file 6: Tables S1 to S3 for results section.
DOI: 10.15468/dl.zmmquj
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.23638 -36.24099, 149.23638 -36.247728, 149.240872 -36.247728, 149.240872 -36.24099, 149.23638 -36.24099))"
 ]
}

 The dataset includes 36 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065432-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2g5njv
title: CCDC 2269557: Experimental Crystal Structure Determination

description: Related Article: Manik Lal Maity, Samyadeb Mahato, Subhajit Bandyopadhyay|2023|Angew.Chem.,Int.Ed.|62|e202311551|doi:10.1002/anie.202311551
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.wc54gr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.526088 -32.068296, 149.526088 -32.070542, 149.532826 -32.070542, 149.532826 -32.068296, 149.526088 -32.068296))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065433-240626123714530/datasets/export for details.
DOI: 10.15468/dl.7w3fxp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((146.438115 -36.243236, 146.438115 -36.245482, 146.44036 -36.245482, 146.44036 -36.243236, 146.438115 -36.243236))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065434-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26562127
title: Additional file 2 of Artificially Selected Grain Shape Gene Combinations in Guangdong Simiao Varieties of Rice (Oryza sativa L.)

description: Additional file 2: Table S2. The fixation index of genomic regions harboring sixteen rice grain shape genes.
DOI: 10.6084/m9.figshare.26562019
title: Additional file 4 of Genomic and immunogenomic analysis of three prognostic signature genes in LUAD

description: Additional file 4. Supplementary table 4. The gene expression survival and rickscore results of GSE50081.
DOI: 10.15468/dl.4jn6bd
title: Occurrence Download

description: A dataset containing 31656 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Diapensiaceae)"
 ]
}

 The dataset includes 31656 records from 359 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027916-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.69v56x
title: Occurrence Download

description: A dataset containing 308197 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Oryctolagus cuniculus (Linnaeus, 1758)",
 "TaxonKey is Pheidole megacephala (Fabricius, 1793)"
 ]
}

 The dataset includes 308197 records from 503 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015586-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g8x9nm
title: Occurrence Download

description: A dataset containing 5638 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Pennisetum polystachion (L.) Schult."
 ]
}

 The dataset includes 5638 records from 178 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049123-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y7mj67
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dombeya acuminatissima Hochr."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027952-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hnfv2n
title: Occurrence Download

description: A dataset containing 217026 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is American Samoa"
 ]
}

 The dataset includes 217026 records from 249 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015597-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k8qdbg
title: Occurrence Download

description: A dataset containing 5836 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Digitonthophagus gazella (Fabricius, 1787)",
 "Year 1970-2023"
 ]
}

 The dataset includes 5836 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049120-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fh8ekm
title: Occurrence Download

description: A dataset containing 220 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diplolophium zambesianum Hiern"
 ]
}

 The dataset includes 220 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027927-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bc1o97
title: Occurrence Download

description: A dataset containing 4297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((26.31908 -24.58328,27.61303 -22.90731,25.91625 -22.87357,25.07397 -24.18302,26.31908 -24.58328))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4297 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015594-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pmhr5t
title: Occurrence Download

description: A dataset containing 3321 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ventenata dubia (Leers) Coss. & Durieu"
 ]
}

 The dataset includes 3321 records from 229 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049138-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pogzcs
title: Occurrence Download

description: A dataset listing the 1577487 species recorded in GBIF matching the query:
{
 "Year" : [
 "1754-1858"
 ]
}

 The dataset's 1577487 records were derived from 1169 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007691-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pw68g5
title: Occurrence Download

description: A dataset containing 3025822 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is United States of America",
 "Country is Mexico",
 "Country is Canada"
 ]
 },
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Apidae",
 "TaxonKey is Megachilidae",
 "TaxonKey is Colletidae",
 "TaxonKey is Andrenidae",
 "TaxonKey is Halictidae",
 "TaxonKey is Mellitidae"
 ]
 }
 ]
}

 The dataset includes 3025822 records from 333 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0424620-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.