cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5124898.v1
title: Supplementary Material for: CD300c is an Activating Receptor Expressed on Human Monocytes

description: Human CD300 molecules comprise a family of receptors that regulate many immune cell processes. They are mostly expressed on myeloid cells, although expression of two members, CD300a and CD300c, has also been described on lymphocytes. However, due to the lack of specific antibodies that distinguish between these two receptors, it has been difficult to determine the expression pattern and function of CD300a and CD300c in primary cells. Here, we have identified a specific monoclonal antibody, clone TX45, that recognizes only CD300c and show that within freshly isolated blood leukocytes, monocytes are the only cells that express CD300c on the cell surface. In vitro differentiation experiments revealed that CD300c is differentially expressed on different monocyte-derived cells, including macrophages and dendritic cells. Furthermore, TLR ligands LPS and flagellin dynamically regulate the expression of CD300c. Cross-linking of this receptor with clone TX45 monoclonal antibody induced calcium mobilization, upregulation of the costimulatory molecule CD86 and the production of inflammatory cytokines. Importantly, LPS-mediated production of inflammatory cytokines by monocytes was further enhanced if CD300c was simultaneously engaged by the agonist antibody. Altogether, our results show that human CD300c is an activating receptor expressed on monocytes and that it has a potential role in inflammatory responses.
DOI: 10.6084/m9.figshare.5172991.v1
title: Supplementary Material for: High-Performance Membrane Dialyzers and Mortality in Hemodialysis Patients: A 2-Year Cohort Study from the Annual Survey of the Japanese Renal Data Registry

description: <b><i>Background:</i></b> Little information is available regarding the type of dialyzer which results in good prognosis. This study is aimed at investigating the association between 7 types of dialyzers and 2-year mortality. <b><i>Methods:</i></b> We conducted a cohort study using data from a nationwide registry of the Japanese Society for Dialysis Therapy. Subjects were 136,676 patients on maintenance hemodialysis (HD) between 2009 and 2011 who underwent maintenance HD for at least 2 years and were treated with one of the following 7 types of high-performance membrane dialyzers: cellulose triacetate (CTA), ethylene vinyl alcohol (EVAL), polyacrylonitrile (PAN), polyester polymer alloy (PEPA), polyethersulfone (PES), polymethylmethacrylate (PMMA), and polysulfone (PS). Cox regression was used to estimate the association between baseline dialyzers and all-cause 2-year mortality, adjusting for potential confounders. <b><i>Results:</i></b> Data were adjusted using basic factors, with PS as a reference group, and the hazard ratio (HR) was significantly higher in CTA, PMMA, PAN, and EVAL groups. Further data adjustment for Kt/V yielded the same results as were obtained from data adjusted for basic factors. After further adjustment for nutrition- and inflammation-related factors, HR was significantly lowered for the PES and PMMA groups compared with the PS group (HR 0.88; 95% CI 0.82-0.94 and HR 0.84 95% CI 0.76-0.93, respectively). After propensity score matching, HR for the PES and PMMA groups was significantly lowered compared with the PS group. <b><i>Conclusions:</i></b> The use of different membrane types may affect mortality. Further long-term prospective studies are needed to clarify whether the PES and PMMA membranes can improve prognosis.
DOI: 10.6084/m9.figshare.28184648.v2
title: Recent Tectonic Deformation of the Lunar Farside Mare and South Pole-Aitken Basin (Dataset)

description: These data correspond to Nypaver et al., 2024 (Recent Tectonic Deformation of the Lunar Farside Mare and South Pole–Aitken Basin).
DOI: 10.17632/j38whndhhy
title: Comparison of isolation methods using commercially available kits for obtaining extracellular vesicles from cow milk (supplementary files)

description: Supplementary Figure 1. Measurement of EV counts and protein concentrations in each fraction from qEV. (A) Combination of centrifugation-based casein removal and qEV. Black circles represent EV counts/mL; squares represent the protein concentration at Abs = 280 nm. Values are means ± SEM (n = 3). (B) Combination acetic acid precipitation-mediated casein removal and qEV. Black circles represent EV counts/mL; squares represent the protein concentration at Abs = 280 nm. Values are means ± SEM (n = 3). (C) Combination of EDTA precipitation-mediated casein removal and qEV. Black circles represent EV counts/mL; squares represent the protein concentration at Abs = 280 nm. Values are means ± SEM (n = 3). Supplementary Figure 2. Measurement of EV counts and protein concentration in each fraction from EVSecond L70. (A) Combination of centrifugation-mediated casein removal and EVSecond L70. Black circles represent EV counts/mL; squares represent the protein concentration at Abs = 280 nm. Values are means ± SEM (n = 3); (B) Combination of acetic acid precipitation-mediated casein removal and an EVSecond L70. Black circles represent EV counts/mL; squares represent the protein concentration at Abs = 280 nm. Values are means ± SEM (n = 3). (C) Combination of EDTA precipitation-mediated casein removal and EVSecond L70. Black circles EV counts/mL; squares represent the protein concentration at Abs = 280 nm. Values are means ± SEM (n = 3).
DOI: 10.6084/m9.figshare.11618316.v1
title: Simulated significant wave height (monthly, 2015.01-2100.12) from FIO-ESM v2.0 ssp126 experiment r1i1p1f1

description: Simulated significant wave height (monthly, 2015.01-2100.12) from FIO-ESM v2.0 ssp126 experiment (one of future scenarios) r1i1p1f1. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.6084/m9.figshare.13883765.v2
title: Forensics_FORCAS

description: Dataset for paper - Forensic Coding Patterns to Development Supervised Learning-based Projects
DOI: 10.6084/m9.figshare.22134191.v1
title: Male 10wk CBA_A tibial epiphysis

description: 3D .tif of a healthy CBA mouse (male, 10 weeks old) tibial epiphysis.
DOI: 10.6084/m9.figshare.26411242.v1
title: Supplementary Material for: Is cholecystectomy necessary after choledocholithiasis treatment for the elderly or patients with many comorbidities?

description: Introduction: We evaluated the prognosis after endoscopic treatment for choledocholithiasis, particularly in patients with borderline tolerance to surgery. Stone removal and cholecystectomy are generally recommended for patients with choledocholithiasis combined with gallstones to prevent recurrent biliary events. However, the prognosis after choledocholithiasis treatment in patients with borderline tolerance to surgery, such as the elderly or those with many comorbidities, remains controversial. 
Methods: We retrospectively analyzed data from patients with choledocholithiasis treated at our facility between January 2012 and December 2021. Patients who underwent endoscopic sphincterotomy were dichotomized into the cholecystectomy (CHOLE) and conservation (CONS) groups depending on whether cholecystectomy was performed, and their prognoses were subsequently compared. Furthermore, we performed a logistic regression analysis of the factors contributing to recurrent biliary events in patients with high age-adjusted Charlson Comorbidity Index (aCCI) scores.
Results: Of 169 participants, 110 had gallstones and were divided into the CHOLE (n=56) and CONS (n=54) groups. The CONS group was significantly ordered, had more comorbidities, and higher aCCI scores, whereas the CHOLE group had fewer recurrent biliary events, although not significant (P= 0.122). No difference was observed in the recurrent incidence of grade ≥ 2 biliary infections and mortality related to biliary events between the groups. In patients with aCCI scores ≥ 5, conservation without cholecystectomy was not an independent risk factor for recurrent biliary events.
Conclusion: Cholecystectomy after choledocholithiasis treatment prevents recurrent biliary events, but conservation without cholecystectomy is a feasible option for patients with high aCCI scores.
DOI: 10.6084/m9.figshare.27620076.v1
title: MERFISH_Aging

description: processed mouse aging brain dataset from Allen et al. (<i>Cell</i>, 2023), containing 31 slices with the tissue labels. The data has been normalized and scaled by the original authors, and the PCA results are also provided.
DOI: 10.17632/9k3bf6ksnd
title: Bag Damage Detection Dataset

description: The "Bag Damage Detection" dataset focuses on damages in bag, providing a specialized collection of 700 images captured using an iPhone 13 12MP rear camera. This dataset was gathered between October and December 2023, from the India Innovation Centre Vanderlande in Pune, as well as from platforms like Roboflow, YouTube, iStock, and Shutterstock. The images capture various scales and angles, simulating real-world conditions encountered in baggage handling systems. Each image is annotated with segmented bounding boxes marking the precise locations of damages such as tears, rips, and punctures, labeled with the classes "damage" and "bag." This detailed labeling will support the development of instance segmentation models using the latest algorithm. The dataset undergoes preprocessing steps including orientation, resizing to 640x640 pixels, and augmentation techniques like flips, rotations, and noise addition to enhance the model's robustness and generalization capabilities. This dataset is critical for applications in automated baggage handling, quality control, and security screening, aiding in the development of systems that can accurately assess the condition of luggage, thereby improving operational efficiency and reducing manual inspection efforts.
DOI: 10.17632/jyvbffbjky
title: TPB Data Rwanda

description: This data set contains that data collected in Rwanda in 2021 in order to understand farmers' intentions to adopt agroforestry practices in the country.
DOI: 10.17632/zfxty2pxd8
title: Supplementary Material to: Can a gradual weaning and separation process reduce weaning distress in dam-reared dairy calves? A comparison with the two-step method.

description: Supplementary data to the following publication: Vogt, A., Barth, K., Waiblinger, S. & König von Borstel, U. (TBC). Can a gradual weaning and separation process reduce weaning distress in dam-reared dairy calves? A comparison with the two-step method. Journal of Dairy Science. https://doi.org/10.3168/jds.2023-23809 or https://doi.org/10.3168/jds.2024-23809


Abstract 
The weaning and separation phase remains one of the biggest challenges for cow-calf-contact systems, but a gradual process that better mimics the naturally occurring reduction in milk intake has not yet been scientifically investigated. Therefore, the aim of our study was to compare behavioral and physiological indicators of distress in 3-months-old dam-reared dairy calves (with previous full-time cow-calf contact) weaned and separated either via gradual reduction of contact time with the dam (GR, 1 week half day contact, 1 week morning contact, 1 week fence-line contact before complete separation, n=18) or via two-step weaning using a nose flap (NF, 2 weeks access to dam with a nose flap, 1 week fence-line contact before complete separation, n=18). Behavior was recorded 1 week before (or for lying 3 weeks before) weaning start and during the 3 week weaning and separation period with direct observations on 4 days per week or via accelerometers (locomotor play, lying behavior). Blood and fecal samples were taken twice per week from weaning start until 3 weeks after weaning start. Calves were weighed weekly. Statistical analysis was conducted using (generalized) linear mixed models. Over the whole weaning and separation phase, NF calves showed a stronger decrease in the number of lying bouts, amount of locomotor play and average daily weight gains, as well as a higher increase in total mixed ration feeding time compared to GR calves, whereas GR calves vocalized more often and showed more searching behavior than NF calves. Also, the neutrophil:lymphocyte ratio of NF calves was elevated on day 3 after insertion of the nose flaps compared to baseline, but showed no change for GR calves on any sampling day. Overall, results point towards a favorable effect of a gradual weaning strategy on reduction of weaning and separation distress in dam-reared dairy calves, but the method requires further improvement from the protocol used in our study.
DOI: 10.6084/m9.figshare.17087111.v1
title: Search strategy and authors role

description: This is the process of how authors search the study articles and conduted the review.
DOI: 10.6084/m9.figshare.22664647.v1
title: Supplementary Material for: Regulation of macrophage cell surface GAPDH alters LL-37 internalization and downstream effects in the cell

description: Mycobacterium tuberculosis (M.tb), the major causative agent of tuberculosis (TB), has evolved mechanisms to evade host defenses and persist within host cells. Host directed therapies (HDTs) against infected cells are emerging as an effective option. Cationic host defense peptide LL-37 is known to internalize into cells and induce autophagy resulting in intracellular killing of M.tb. This peptide also regulates the immune system and interacts with the multifunctional protein Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), inside macrophages. Our investigations revealed that GAPDH moonlights as a mononuclear cell surface receptor that internalizes LL-37. We confirmed that the surface levels of P2X7, the receptor previously reported for this peptide remained unaltered on M.tb infected macrophages. Upon infection or cellular activation with IFNγ, surface recruited GAPDH bound to and internalized LL-37 into endocytic compartments via a lipid raft dependent process. We also discovered a role for GAPDH in LL-37 mediated autophagy induction and clearance of intracellular pathogen. In infected macrophages wherein GAPDH had been knocked down, we observed an inhibition of LL-37 mediated autophagy which was rescued by GAPDH over expression. This process was dependent on intracellular calcium and P38 MAPK pathways. Our findings reveal a previously unknown process by which macrophages internalize an antimicrobial peptide via cell surface GAPDH and suggests a moonlighting role of GAPDH in regulating cellular phenotypic responses of LL-37 resulting in reduction of M.tb burden.
DOI: 10.6084/m9.figshare.3512327.v1
title: Appendix A. A comparison of general linear models explaining bird mean abundances.

description: A comparison of general linear models explaining bird mean abundances.
DOI: 10.17632/c6c9tjvy8g
title: Experimental stability boundary for a three-flute 20 mm indexable end mill in slot machining of aluminium 7075-T651

description: Chatter test Results along with impact test results on the tool mounted on the spindle of the DMC160 machine tool, in the stationary condition. The chatter tests spans 7500-9500 rev/min and depth of cuts of 0.25 to 1.2 mm.
DOI: 10.6084/m9.figshare.27633726.v1
title: The genome sequence of African cultivated rice, <i>O. glaberrima</i> (IRGC104165)

description: This is the whole genome sequence of O. glaberrima with 12 chromosomes.
DOI: 10.17632/yznd2ky9r6
title: IrRep: Symmetry eigenvalues and irreducible representations of ab initio band structures

description: We present IrRep – a Python code that calculates the symmetry eigenvalues of electronic Bloch states in crystalline solids and the irreducible representations under which they transform. As input it receives bandstructures computed with state-of-the-art Density Functional Theory codes such as VASP, Quantum Espresso, or Abinit, as well as any other code that has an interface to Wannier90. Our code is applicable to materials in any of the 230 space groups and double groups preserving time-reversal symmetry with or without spin-orbit coupling included, for primitive or conventional unit cells. This makes IrRep a powerful tool to systematically analyze the connectivity and topological classification of bands, as well as to detect insulators with non-trivial topology, following the Topological Quantum Chemistry formalism: IrRep can generate the input files needed to calculate the (physical) elementary band representations and the symmetry-based indicators using the CheckTopologicalMat routine of the Bilbao Crystallographic Server. It is also particularly suitable for interfaces with other plane-waves based codes, due to its flexible structure.
DOI: 10.6084/m9.figshare.19499240.v1
title: patches and local annotations, slide 159, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.22207714.v1
title: Level_3_protein_data_normalized_and_scaled

description: This dataset contains scaled level 3 (protein level) data obtained from calculating the mean intensities of level 2 normalized peptide data.
DOI: 10.6084/m9.figshare.23937123.v1
title: A Review of Sustainable Investing in Commercial Real Estate

description: This is an Excel summary of the key papers resulting from a structured literature search for ESG investing in commercial real estate (CRE).
DOI: 10.6084/m9.figshare.6715940.v4
title: Compilation of process-based embodied flows for Chilean building materials

description: Compilation of publicly available environmental flows for Chilean building materials extracted from various sources. Work in progress, more data and details to be published.
DOI: 10.15468/dl.s4zxrh
title: Occurrence Download

description: A dataset containing 1828 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Perizoma flavofasciata (Thunberg, 1792)"
 ]
}

 The dataset includes 1828 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009316-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/chrzcxtfbb
title: Expansion Potential Metrics Correlation Heatmap

description: General Description of the Dataset
The dataset data_expansion is designed to simulate key metrics that are essential for evaluating a company's potential for expansion. It consists of four primary variables, each representing a different dimension of expansion strategy and operational capacity:
Adoption Rate: This variable quantifies the percentage of customers or users who adopt a new product or service. It is generated using a normal distribution with a mean of 40 and a standard deviation of 12. This indicates that while many observations will cluster around the average adoption rate, there is variability reflecting differences in market acceptance and consumer willingness to engage with new offerings.
Adaptability: This metric assesses how well a company can adjust to changes in the market or its operational environment. Simulated using a uniform distribution ranging from 1 to 5, where higher values indicate greater adaptability, this score helps evaluate a company's responsiveness to evolving consumer needs and market dynamics.
Expansion Cost: This variable represents the financial investment required for expansion efforts, generated from a normal distribution with a mean of $100,000 and a standard deviation of $20,000. This reflects the typical costs associated with scaling operations, including expenses related to marketing, infrastructure development, and workforce expansion.
Scalability: This metric evaluates how easily a business can grow its operations without being hindered by its existing structure or resource limitations. Like adaptability, scalability is generated using a uniform distribution from 1 to 5, where higher scores indicate better potential for scaling operations effectively.
The dataset contains 100 observations for each variable, providing a robust foundation for analysis.
DOI: 10.17632/dsngw3zsnz
title: Rhythmic Auditory Stimulation after stroke

description: The purpose was to evaluate the effect of rhythmic auditory stimulation in combination with conventional physiotherapy on gait parameters and walking ability in subacute stroke. Database is in Catalan language. Persons from year 2018 (n=27) were assigned as historical control group, and in year 2019 persons (n=28) received rhythmical auditory stimulation three times a week. Primary outcomes were gait parameters (Tinetti test and Timed Up&Go test), and walking ability (Functional Ambulation Category scale). Secondary outcomes were trunk control, assistive devices, functional independence (Functional Independence Measure, Barthel index), and stroke severity and disability (modified Rankin scale, National Institutes of Health Stroke Scale). Outcomes were measured at hospitals admissions and at discharge. Results: Baseline demographic and clinical characteristics were comparable between the two groups. No between-group differences were identified for gait parameters nor for secondary outcomes. Significant between-group differences were observed in walking ability with the Functional Ambulation Category.
DOI: 10.6084/m9.figshare.12623960.v1
title: Medicago sativa genome and annotation files

description: Cultivated alfalfa "Zhongmu No.1" genome sequence, CDS sequence, protein sequence and gff files.
DOI: 10.17632/ztpk2nwzg5
title: Mapping the substrate landscape of protein phosphatase 2A catalytic subunit PPP2CA

description: Unmodified data relating to the iScience manuscript titled "Mapping the substrate landscape of protein phosphatase 2A catalytic subunit PPP2CA"
DOI: 10.6084/m9.figshare.25702254.v1
title: Cancelculturetextdata

description: This dataset was obtained from the Twitter platform. It contains metadata of tweets made in the context of cancel culture, between 2018 and 2022. The search terms used for creating the scraping script used to obtain it is "cancel culture" and "#cancelculture".
DOI: 10.6084/m9.figshare.28760846.v1
title: Biocrust effects on biodiversity and ecosystem multifunctionality.

description: The data file includes a database of collected biological crust studies, data from impact factor analyses, and data from mixed effects modeling analyses. The folder includes the code to be used.
DOI: 10.17632/4fyym7dhxg
title: Data for: Robust cross-country analysis of inequality of opportunity
DOI: 10.17632/mxt72n2dvv
title: Distributional Justice of Solar Energy and the Role of Solar Policy

description: Annual trend of utility-scale solar from 2009 to 2019; Race/income/education/solar policy data and relative levels based on Jenks Natural Breaks Classification method; Kernel density analysis of solar power plants in this research; Solar power plants data in SHP files; details of solar power plants analyzed in the research; GeoDetector model tool; Geodetector analysis result; input data for GeoDetector analysis.
DOI: 10.6084/m9.figshare.16546500.v1
title: Supplementary Material for: Dental caries occurrence in Inflammatory Bowel Disease patients. A systematic review and meta-analysis

description: Medicine