cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/bcrvd4mdsf.1
title: Biological Implementation of a Braitenberg Vehicle 

description: In a small seminal book titled Vehicles: Experiments in Synthetic Psychology, Valentino Braitenberg (1926–2011) describes a set of thought experiments in which agents with simple structure behave in human-like ways; Braitenberg blatantly put forward the hypothesis that the primitives for realizing such machines are cellular and synaptic processes that are amenable for physiological characterization. The reasoning and results presented in Shahaf et al (2008) make the realization of a Braitenberg's vehicle that classifies objects in its visual field (using a large-scale network of biological neurons) a trivial matter. Such a Braitenberg's vehicle is demonstrated in the above video clip that was prepared in Marom's group by Danny Eytan, David Ben Shimol and Lior Lev-Tov.  A low resolution movie was published in the 'supporting information' section of the 2008 paper.

The main text and data of Shahaf et al (2008) show that the physical loci wherefrom stimuli are delivered to a recurrent, large scale random network of cortical neurons, albeit causing "noisy" neuronal responses, may be fully classified using the temporal order at which neurons are recruited by the different stimuli. Here, an application of this idea, in the form of a Braitenberg vehicle, is demonstrated: Inputs from the two (Right and Left) ultrasonic "eyes" of a Lego Mindstorms vehicle are sampled at 0.2 Hz and translated into stimulation of a large random network of cortical neurons at two different sites. The side corresponding to the nearest visual object (relative to vehicle's longitudinal axis) is classified using an Edit (Levenshtein)-distance metric based on the recruitment order of 8 neurons; these 8 neurons equally respond to stimuli from each of the two eyes, but their recruitment order is unique to the stimulus side. Based on the classified activity, a command is sent to the appropriate motor attached to one of the wheels. The red trace on the left side of the movie frame represents the total network activity (points depict evoked activity); the blue numbers in front of vehicle's “eyes” show distances (in cm) from the right and left sensed objects; the Edit distance of the evoked recruitment orders, from a predefined internal representation of the Right and Left objects, is shown in red numbers. Top left: time in seconds.

In Marom et al 2009, we have used the above vehicle to provide a sobering example for the limits of reverse engineering in neuroscience. We demonstrate that application of reverse engineering to the study of the design principle of this functional neuro-system, may result in a perfectly valid but wrong induction of the system’s design principle.  If in the very simple setup we bring here (static environment, primitive task and practically unlimited access to every piece of relevant information), it is difficult to induce a design principle, what are our chances of exposing biological design principles when more realistic conditions are examined?
DOI: 10.17632/c64h244vs8.2
title: Transient glycolytic complexation of arsenate enhances resistance in the enteropathogen Vibrio cholerae

description: TIS analysis (underrepresented Tn mutants)
DOI: 10.17632/rhp3fs33yy.2
title: Transient glycolytic complexation of arsenate enhances resistance in the enteropathogen Vibrio cholerae

description: TIS and TPP analysis
DOI: 10.17632/xgxwzsnnbp.1
title: LINF_300010400

description: ALG14 | UDP-N-acetylglucosaminyltransferase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/tbfyx9gzr3.1
title: LINF_300010300

description: N-acetyltransferase B complex (NatB) non catalytic subunit
Leishmania infantum (strain JPCM5)
DOI: 10.17632/vs25wcj6sy.1
title: LINF_300009900

description: ENP1
Leishmania infantum (strain JPCM5)
DOI: 10.17632/73skrvrvs4.1
title: LINF_300009700

description: aspartyl-tRNA synthetase | AspRS
Leishmania infantum (strain JPCM5)
DOI: 10.17632/mttnp9v4zt.1
title: LINF_300009600

description: Eukaryotic translation initiation factor 4E-4 | eIF4E4
Leishmania infantum (strain JPCM5)
DOI: 10.17632/gxbx87bg77.2
title: URF_BC patterns

description: Recombination patterns of HIV-1 BC samples classified as URFs used in frequency data of study: GENOMIC CHARACTERIZATION OF HIV-1 BC RECOMBINANT VIRUSES. Oliveira, R. C. and Monteiro-Cunha, J. P. (2021).
The mosaics were generated by JphMM online tool
DOI: 10.17632/d6mm8zmzmg.1
title: URF_BC patterns

description: Recombination patterns of HIV-1 BC samples classified as URFs used in frequency data of study: GENOMIC CHARACTERIZATION OF HIV-1 BC RECOMBINANT VIRUSES. Oliveira, R. C. and Monteiro-Cunha, J. P. (2021).
The mosaics were generated by JphMM online tool
DOI: 10.17632/kh6wt83x7n.1
title: Supplementary data

description: Subgroup KM-analysis of clinical characteristic of gastric cancer with the expresion of PSAP mRNA; Correlation of PSAP with immunomodulatory genes
DOI: 10.5281/zenodo.6818510
title: Data subset from Sorbie, Jimenez and Benakis, iScience, 2022

description: This dataset is a subset of the raw fastq files from Sorbie, Jimenez and Benakis, iScience, 2022, used to test the associated data processing and analysis pipeline.
DOI: 10.17632/txygpjpzbj.1
title: RAW DATA 

description: This study found that after spinal cord injury, macrophages phagocytize myelin debris to form foamy macrophages, while microglia do not form foamy cells, which may be because microglia can effectively clear myelin debris in a relatively short time, whereas macrophages cannot. In addition, we found that ACAT1 did not mediate the formation of foamy macrophages after spinal cord injury, which was different from atherosclerosis. This study demonstrates that microglia have a stronger ability to clear myelin debris than macrophages and may contribute to the development of novel therapeutic strategies to remove myelin debris more effectively, reduce inflammatory responses, promote remyelination, and accelerate functional recovery after spinal cord injury.
DOI: 10.17632/m5d7r2rjx6.3
title: LAI Estimations of Coffee Hedges through different methods.

description: The attached excel file has the datasets for the process described on the paper submitted by Castro-Pacheco et al, with the title "Visual Assessment of Leaf Area Index in Coffee (Coffea arabica L.) Fields."

Two datasets are shown and described. 

First, a main dataset containing the results from the the first experimentations done, in which the Leaf Area Index (LAI) was estimated with three different approaches on 80 different sampling points. These approaches were: direct defoliation, visual assesment from trained persons, and through the use of specialized equipment (LICOR LAI-2200C  or Accupar LP-80 Ceptometer).

The second -supplementary- dataset corresponds to a second experimentation done, which included 40 sampling points. In these points, LAI was still estimated with the  same three approaches, but two different protocols were tested with the instruments.
DOI: 10.17632/mbzpjp4rz6.1
title: Impact Marginal farmer family financial statements

description: Financial analysis of a marginal farmer with Debits and Credits of Income from banks and Bankers with Financial services charges. This has been impacting their family & children's education and Family health on their financial income. however, this has been leading to the homeless farmers being rental household farmers. Understanding those banking charges by the name of additional charges and Household data yet Government GIS data outdated it should be real-time for PMAYG- PMGAY/ 'Prime Minister's Rural Housing Scheme'
0000-0001-9896-1464
099-59-374-124
DOI: 10.17632/5j95wxc69v.1
title: A comprehensive assessment of four whole blood stabilisers for flow-cytometric analysis of leukocyte populations

description: We evaluated and compared head-to-head the performance of four commercial whole blood cryopreservation kits for conventional flow cytometry; 1) Cytodelics, 2) Stable-Lyse V2 and Stable-Store V2 (SLSS-V2), 3) Proteomic stabiliser (PROT-1), and 4) Transfix. We compared the stabilizers' performance to BD FACS lysing solution - treated samples and/or isolated PBMCs using the identical staining panels (table: flow_panels) and instrument settings. We used three panels to evaluate how well cryopreservation maintains the proportions of main leucocyte lineages (immune cell lineage), how well granulocyte activation markers are preserved after activation (with N-Formylmethionyl-leucyl-phenylalanine and lipopolysaccharides) (granulocyte stimulation data), and how well main T cell maturation stages can be studied after whole blood cryopreservation (T cell data).  

Anonymous healthy donors were used for the testing of the stabilizers. Donors (DN): n=10, age mean 29 [range 22 - 40], female 6 (60%) / male 4 (40%).

Data was generated by Ngoc Anh Nguyen at Translational Immunology Research Program, University of Helsinki in years 2020-22.
DOI: 10.17632/mr87bjfhx2.1
title: The interfacial reaction between diamond (100) surface and CuNi-based filler alloys containing Cr by first-principles calculations

description: In this work, calculations were performed by the functional principles of density functional theory (DFT). The adsorption and reactions of Cu, Ni, Cr, and C of commonly used filler alloys on the diamond (100) surface were systematically investigated. First, preferential adsorption sites of Cu, Ni, Cr, or C on the diamond (100) surface and their interactions were investigated to reveal the differences in the adsorption capacities and mechanisms of these elements in combination with their electronic structures. Meanwhile, the subsequent interfacial reactions were analyzed based on the adsorption of Cu, Ni, Cr, and C. The results of this work are expected to provide theoretical guidance for the optimization and design of filler alloys, thus improving the performance of brazed diamond tools.
DOI: 10.17632/kkk7ckvhcw.1
title: MultiFractal Detrented Fluctuations Analysis on Cosmic Rays Time Series

description: The following dataset corresponds to the application of MultiFractal Detrented Fluctuations Analysis (MFDFA) for the Cosmic Ray case using the Izmiran network detectors (http://cr0.izmiran.ru/common/links.htm). The data sets are:
1. a Table of the neutron monitors with their corresponding properties and characteristics; 2. a Table of the neutron monitors with their corresponding properties and characteristics.
2. A table for Hurst exponents in the context of MFDFA for all the monitors and stations considered.
3. Three files corresponding to the calculated values of the analysis parameters for the Moscow station (http://cr0.izmiran.ru/mosc/main.htm).
4. A dataset corresponding to the counts of the monitoring stations in hourly resolution. Each column contains information for the normalized counts and also for a filter using the median for the smoothed curve.

These data have been used for the manuscript: 
Linking cosmic ray intensities to cutoff rigidity through Multifractal Detrended Fluctuation Analysis. D. Sierra-Porta (orcid=0000-0003-3461-1347) and A. Domínguez-Monterroza (orcid=0000-0002-5274-7443). Submitted to Physica A: Statistical Mechanics and its Applications - Elsevier (2022).
DOI: 10.17632/hdb93dwt2x.2
title: An open design for a low-cost open-loop subsonic wind tunnel for aerodynamic measurement and characterization 

description: A wind tunnel is an essential device for aerodynamic modeling and measurement. High cost and relatively huge size with no open market design hinder the wind tunnel from being widely available in laboratory design for universities and small R&D companies, particularly in a developed country with limited research funding. Thus, most aerodynamic modeling and measurement are done by simulating through computer software which leads to high deviation as the nature of wind is unpredictable. This project aims to provide an open design for a relatively low-cost wind tunnel that universities and R&D companies can quickly adapt. An open design for an open-loop wind tunnel is presented in this article. The proposed wind tunnel design is specifically intended to help the researcher with the aerodynamic measurement with minimum cost for building, customizable design, and reliable measurement. The components, parts, and equipment use the widely available part, which can be obtained across the globe. Validation and characterization are done using software simulation and actual measurement through the device. The proposed design can meet the criteria for aerodynamic measurement and can help the researcher provide a better analysis by combining the actual measurement and software simulation.
DOI: 10.17632/hbmc8yhf7y.5
title: Proteomic characterization of collagen-based animal glues for restoration.

description: Animal glues are widely used in restoration, serving as adhesives, binders, and consolidants for organic and inorganic materials. Their variable performances are intrinsically linked to the adhesive properties of collagen, which determines the glue's chemical, physical, and mechanical properties. We have molecularly characterized the protein components of a range of homemade and commercial glues using mass spectrometry techniques. A shotgun proteomic analysis provided animal origin, even when blended, and made it allowed to distinguish between hide and bone glue on the basis of the presence of collagen type III, which is present abundant in connective skin/leather tissues and poorly synthesized absent in bones. Furthermore, chemical modifications, which arose as a consequence of the preparation protocols from the original animal tissue, where thoroughly evaluated. Deamidation, methionine oxidation and backbone cleavage have been systematically analyzed as significant collagen signatures modifications, demonstrating their variability of collagen modifications among different glues and showing that, on average, bone glues are on average less deamidated than hide glues, but more fragmented, and mixed-collagen glues are overall less deamidated than pure glues. We believe that these data may be of general analytical interest in the characterization of collagen-based materials and may properly guide help restorers in the selection of the most appropriate materials to be used in conservation treatments.
DOI: 10.17632/bv4k59vzkz.1
title: Election Results in Vojvodina (Serbia) - national and regional vote difference 2008-2020

description: Party vote difference in Vojvodina for elections on national (2008-2020), regional (2008-2020) and polling station level (2020).
DOI: 10.17632/n5x7bvkbnb.1
title: Mitochondrial double-stranded RNAs govern the stress response in chondrocytes to promote osteoarthritis development. Kim et al

description: Unprocessed gel and image data for "Mitochondrial double-stranded RNAs govern the stress response in chondrocytes to promote osteoarthritis development" by Kim et al.
DOI: 10.17632/szcxkggf2f.1
title: MBBS WALA is  No. 1 Medical Education Consultant in India. We provide a professional platform for students seeking career assistance, guidance and support

description: MBBS WALA is  No. 1 Medical Education Consultant in India. We provide a professional platform for students seeking career assistance, guidance and support. Our consultant assists students in taking admission in a medical course in India and Abroad. All over India, we have 7 branches.With the experience of 10 years in the field of medical science, we have the expertise and professional shrewdness and we shape & pave the way for students seeking a new avenue for higher studies.We provide admission guidance abroad also. Countries in which we deal are the United Kingdom, USA, Canada, New Zealand, Australia, Georgia, Ukraine, China, Russia, Kyrgyzstan, Nepal, Bangladesh, Armenia and Kazakhstan And Many More Countries.For the students, we as a team are dedicated to exploring various study abroad options. MBBS WALA consultants are specialized in medical education and have many universities of repute as our partners

We offer those universities which are recognized by MCI, WHO, ECFMG, WFE, AMEE, FAIMER, IMED and the degrees are valid not only in India but also in 142 countries.We keep transparency in our work and help to solve all queries, providing personal guidance to the students for the right program and the right institution as per their choice, financial profile & future career plans, etc. We also assist parents and students with educational planning.We have an experienced and professional team of counselors and they would help the students choose their field of interest. Our team tends to look out for everything, obtaining medical admissions abroad, the visa and all other formalities, travel arrangements, forex & day to day requirements within the institute.One more thing our consultant takes responsibility for all necessary help as and when required till completion of the complete program.
DOI: 10.17632/z6wtdbkc5b.1
title: Air Quality Bogota.

description: The following data set has the information for the measurement of air quality at monitoring stations for the city of Bogota-Colombia (http://iboca.ambientebogota.gov.co/mapa/).

The Bogotá Air Quality Monitoring Network - RMCAB (https://ambientebogota.gov.co/red-de-monitoreo-de-calidad-del-aire-de-bogota-rmcab) has been operating since 1997. It is in charge of monitoring concentrations of criteria pollutants (particulate matter smaller than 10 and 2.5 microns in diameter - PM10 and PM2.5, ozone - O3, sulfur dioxide - SO2 and nitrogen dioxide - NO2 and carbon monoxide - CO), black carbon (or black carbon) and meteorological variables (precipitation, temperature, atmospheric pressure, solar radiation, wind speed and direction), through twenty (20) stations installed in different parts of the city.
 
The monitoring stations are made up of monitors, analyzers, and automatic sensors that collect hourly data on the state of air quality in Bogotá. This information is stored and sent via the Internet to the central server of the Secretariat of the Environment. The information is then stored and sent via the Internet to the central server of the Secretariat of the Environment, where it is pre-filled and published in real time on the entity's web page.
 
The network's monitors and analyzers operate under specific measurement methods established in Title 40 of the CFR (Code of Federal Regulations), which are approved by the U.S. Environmental Protection Agency (EPA). For each pollutant a specific reference method is defined, according to the equivalent technique for the operation of each monitor, also established in the appendices of Part 50 of Title 40 of the CFR.
DOI: 10.17632/mmjyvz7kgh.1
title: The Interaction between Framing and Timing

description: (1) The experimental conditions were framing and timing.
(2) The outcome of participants' security decision-making was measured in terms of a binary choice on whether to set a game password, password guesses, and the time spent on the security warnings.
DOI: 10.17632/ctdzyt6v6v.2
title: Data and code for: rumor sharing behavior during the COVID-19 pandemic

description: Data and code for: rumor sharing behavior during the COVID-19 pandemic
DOI: 10.17632/g4m7y2gd33.1
title: Association between serum lipids and apolipoproteins level and chronic subdural hematoma a case-control study

description: There are 137 cases of chronic subdural hematoma and a 3-fold matched control group (411) in this study. Controls, matched for age (±2 years) and gender, were randomly selected from the patients who come from Department of Emergency Surgery in our hospital, and were excluded if they had stroke, coronary heart disease or treated with lipid-lowering agents. The data included demographic characteristics (age, gender, marital status), past medical history (including a history of hypertension, diabetes mellitus, malignant tumor, kidney failure and dementia), smoking habits, alcohol consumption, head trauma within 3mouth, anticoagulant.
DOI: 10.17632/g49bw7tk2x.2
title: LC-QTOF dataset on antibacterial activity extract of Dryopteris lacera (Thunb.) Kuntze and Dryopteris bissetiana (Baker) C. Chr.

description: The leaves of Dryopteris sp. were extracted with 70 % EtOH, and the chemical compounds were analyzed by UPLC-QTOF-MS system. The mobile phase was a gradient elution using solvent A (DW + 0.1 % formic acid) and solvent B (ACN + 0.1 % formic acid). The capillary voltage was 2.5 kV,  mass range was 50-1500 m/z. The antibacterial effect on pathogenic microorganisms (E. coli, Salmonella enteritidis, Staphylococcus aureus, Streptococcus mutans, Candida albicans).
DOI: 10.17632/3bb2253gtp.1
title: Original data of "Galectin-1 deletion in mice causes bone loss via impaired osteogenic differentiation potential of BMSCs"

description: Original data of "Galectin-1 deletion in mice causes bone loss via impaired osteogenic differentiation potential of BMSCs"
DOI: 10.17632/t8hpjvgp8y.1
title: Datasets PM2.5 simulated using WRF-Chem model

description: Data Statement

 
Number of vehicles dateset in Lima were obtained from a report by the Instituto Nacional de Estadistica e Informatica (INEI; translated as “National Institute of Statistics and Informatics”).



The vertical variation of potential (θ), equivalent potential (θe), and virtual (θV) temperatures, the atmospheric soundings dataset at the Jorge Chavez airport (JCAi; location: 12° S, 77°11' W; altitude: 13 MASL) in Lima were obtained from University Wyomin website: http://weather.uwyo.edu/upperair/sounding.html. The maximum (Tmax), minimum (Tmin) air temperature dataset measured at the Jorge Chavez airport (JCAi) in Lima were obtained from the Iowa State University website:
https://mesonet.agron.iastate.edu/sites/obhistory.php?station=SPJC&network=PE__ASOS&metar=0&madis=0&year=2016&month=2&day=2

Spatial-temporal simulations of hourly measurements of air pollutants and meteorological variables dataset were carried out, for both vehicular emission gasses and aerosols in the WRF-Chem (version 4.0) model in Lima, which was used as the simulation control case.

Spatial-temporal simulations of vehicular gas emissions, without considering vehicular aerosol-emissions in the WRF-Chem (version 4.0) model in Lima, which was used as the sensitivity experiment.


The control case in the WRF-Chem model results hourly variations in the PM2.5 concentration dataset for the same site of the four automatic air-quality monitoring stations (AAQMS) in the Metropolitan Area of Lima and Callao (MALC).

The sensitivity scenario in the WRF-Chem model results hourly variations in the PM2.5 concentration dataset for the same site of the four automatic air-quality monitoring stations (AAQMS) in the Metropolitan Area of Lima and Callao (MALC).
DOI: 10.17632/nvrdxn35tb.1
title: Multiplexed LNP-mRNA vaccination against pathogenic coronavirus species. Peng et al

description: Original data of flow cytometry to check the characterization of  mRNA-LNP particles
DOI: 10.17632/ztn5h4f9w7.1
title: Association between hypoglycemia and risk of dementia in patients with type 2 diabetes mellitus: a systematic review and meta-analysis

description: Association between hypoglycemia and risk of dementia in patients with type 2 diabetes mellitus: a systematic review and meta-analysis
DOI: 10.17632/rpf33vkjcd.1
title: Supplementary Material 1

description: Example of entries from the SmartPhrases curriculum.
DOI: 10.17632/dd3ztck72t.1
title: Head Morphology of Human Spermatozoa in Sri Lankan Population (HMHSSP)

description: One hundred Vindana Reproductive Healthcare Center patients donated sperm samples. To fix and stain the sperm samples, Dr. Danajaya Rathruwan Perera's staining technique was used. 690 photographs were taken with a Nikon eclipse microscope with a 100 magnification. Each image was 1840 by 1240 pixels in size. The sperm heads in these photographs were cropped and separated into five groups. Pyriform, Amorphous, Tapered, Normal, and Others are the classifications. After classification, only samples whose classification was decided by consensus were kept in the data-set. Dr. Dananjaya Rathruwan Perera validated this data set (Scientist - Reproductive Healthcare). Nadun Nissanka is in charge of developing the data-set.