cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10801191
title: MatSeg DataSet and Benchmark For Zero-Shot Material States Segmentation From images

description: This is an old version for the new version see https://zenodo.org/records/11331618

 

A Dataset and Benchmark for zero-shot segmentation of materials states described in: “Learning Zero-Shot Material States Segmentation, by Implanting Natural Image Patterns in Synthetic Data” Described in https://arxiv.org/pdf/2403.03309.pdf 

See ReadMe in the zip file for technical details.

 

MatSeg Benchmark 

A benchmark for zero-shot material state segmentation. The benchmark contains 820 real-world images with a wide range of material states and settings. For example: food states (cooked/burned..), plants (infected/dry.), to rocks/soil (minerals/sediment),  construction/metals (rusted, worn),  liquids  (foam/sediment), and many other states in a class-agnostic manner.  The goal is to evaluate the segmentation of material materials without knowledge or pretraining on the material or setting. The focus is on materials with complex scattered boundaries, and gradual transition  (like the level of wetness of the surface). The annotation of the benchmark is point-based and similarity-based. Hence, for each image, we select several points and regions (Figure 4). We group the points of the same materials into the same label, we also define a group of points that have partial similarity. For example points in group A are more similar to points in group B than to points in group C (In case materials A and B are similar to each other but not identical). This approach allows us to capture the complexity of gradual transition and partial similarities in the world. While also enabling dealing with complex scattered and blurry shapes without needing to annotate the full shape which in many cases is unclear or very hard.

Files MatSegBenchmark*.zip

MatSeg synthetic Dataset Samples 

Synthethic dataset of images of materials spread on object surfaces and their segmentation map.

The synthetic dataset is a very big, sample of the dataset as been uploaded.

Files:       MatSegSynthehticDataSample*.zip

The full dataset can be found in this URLS:

https://e.pcloud.link/publink/show?code=kZHCcnZOfzqInb3anSl7xzFBoqCDmkr2JKV

https://icedrive.net/s/SBb3g9WzQ5wZuxX9892Z3R4bW8jw

 

Generation Script for the synthetic data:

https://github.com/sagieppel/MatSeg-Synthethic-Dataset-Generation-Script

https://zenodo.org/records/10822596
DOI: 10.60712/si-id252227.1
title: StrainInfo SI-ID 252227.1

description: StrainInfo dataset 252227 about a strain of Aspergillus aureolatus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252228.1
title: StrainInfo SI-ID 252228.1

description: StrainInfo dataset 252228 about a strain of Ophiostoma distortum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252229.1
title: StrainInfo SI-ID 252229.1

description: StrainInfo dataset 252229 about a strain of Sporothrix stenoceras. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252302.1
title: StrainInfo SI-ID 252302.1

description: StrainInfo dataset 252302 about a strain of Pleurothecium recurvatum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252303.1
title: StrainInfo SI-ID 252303.1

description: StrainInfo dataset 252303 about a strain of Spizellomyces punctatus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252304.1
title: StrainInfo SI-ID 252304.1

description: StrainInfo dataset 252304 about a strain of Beauveria bassiana. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252195.1
title: StrainInfo SI-ID 252195.1

description: StrainInfo dataset 252195 about a strain of Microbotryum violaceum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/zs4mdj
title: Hartland Nature Club Lepidoptera Collection

description: The Hartland Nature Club in Hartland, Vermont, USA houses historic specimens from the town and beyond. There are 6 drawers of Lepidoptera (mostly butterflies with some giant silkmoths)in sealed Riker mounts. The collection was examined and digitized as part of the Vermont Butterfly Atlas in 2003. For more information about the collection, visit https://hartland.govoffice.com/index.asp?SEC=389E026F-C3E7-4EE7-B792-8DDE5B4097F4&Type=B_BASIC.
DOI: 10.60712/si-id252196.1
title: StrainInfo SI-ID 252196.1

description: StrainInfo dataset 252196 about a strain of Zopfiella latipes. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252197.1
title: StrainInfo SI-ID 252197.1

description: StrainInfo dataset 252197 about a strain of Cirrenalia macrocephala. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252198.1
title: StrainInfo SI-ID 252198.1

description: StrainInfo dataset 252198 about a strain of Coniochaeta leucoplaca. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.5281/zenodo.10801190
title: MatSeg DataSet and Benchmark For Zero-Shot Material States Segmentation From images

description: This is an old version for the new version see https://zenodo.org/records/11331618

 

A Dataset and Benchmark for zero-shot segmentation of materials states described in: “Learning Zero-Shot Material States Segmentation, by Implanting Natural Image Patterns in Synthetic Data” Described in https://arxiv.org/pdf/2403.03309.pdf 

See ReadMe in the zip file for technical details.

 

MatSeg Benchmark 

A benchmark for zero-shot material state segmentation. The benchmark contains 820 real-world images with a wide range of material states and settings. For example: food states (cooked/burned..), plants (infected/dry.), to rocks/soil (minerals/sediment),  construction/metals (rusted, worn),  liquids  (foam/sediment), and many other states in a class-agnostic manner.  The goal is to evaluate the segmentation of material materials without knowledge or pretraining on the material or setting. The focus is on materials with complex scattered boundaries, and gradual transition  (like the level of wetness of the surface). The annotation of the benchmark is point-based and similarity-based. Hence, for each image, we select several points and regions (Figure 4). We group the points of the same materials into the same label, we also define a group of points that have partial similarity. For example points in group A are more similar to points in group B than to points in group C (In case materials A and B are similar to each other but not identical). This approach allows us to capture the complexity of gradual transition and partial similarities in the world. While also enabling dealing with complex scattered and blurry shapes without needing to annotate the full shape which in many cases is unclear or very hard.

Files MatSegBenchmark*.zip

MatSeg synthetic Dataset Samples 

Synthethic dataset of images of materials spread on object surfaces and their segmentation map.

The synthetic dataset is a very big, sample of the dataset as been uploaded.

Files:       MatSegSynthehticDataSample*.zip

The full dataset can be found in this URLS:

https://e.pcloud.link/publink/show?code=kZHCcnZOfzqInb3anSl7xzFBoqCDmkr2JKV

https://icedrive.net/s/SBb3g9WzQ5wZuxX9892Z3R4bW8jw

 

Generation Script for the synthetic data:

https://github.com/sagieppel/MatSeg-Synthethic-Dataset-Generation-Script

https://zenodo.org/records/10822596
DOI: 10.60712/si-id252230.1
title: StrainInfo SI-ID 252230.1

description: StrainInfo dataset 252230 about a strain of Nakazawaea ernobii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252231.1
title: StrainInfo SI-ID 252231.1

description: StrainInfo dataset 252231 about a strain of Candida tropicalis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252232.1
title: StrainInfo SI-ID 252232.1

description: StrainInfo dataset 252232 about a strain of Yarrowia lipolytica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252233.1
title: StrainInfo SI-ID 252233.1

description: StrainInfo dataset 252233 about a strain of Myriococcum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252305.1
title: StrainInfo SI-ID 252305.1

description: StrainInfo dataset 252305 about a strain of Candida tropicalis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252306.1
title: StrainInfo SI-ID 252306.1

description: StrainInfo dataset 252306 about a strain of Candida albicans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252199.1
title: StrainInfo SI-ID 252199.1

description: StrainInfo dataset 252199 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252307.1
title: StrainInfo SI-ID 252307.1

description: StrainInfo dataset 252307 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252200.1
title: StrainInfo SI-ID 252200.1

description: StrainInfo dataset 252200 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252234.1
title: StrainInfo SI-ID 252234.1

description: StrainInfo dataset 252234 about a strain of Pseudofusarium fusarioideum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252235.1
title: StrainInfo SI-ID 252235.1

description: StrainInfo dataset 252235 about a strain of Phialomyces macrosporus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252236.1
title: StrainInfo SI-ID 252236.1

description: StrainInfo dataset 252236 about a strain of Leptosphaerulina australis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252237.1
title: StrainInfo SI-ID 252237.1

description: StrainInfo dataset 252237 about a strain of Robillarda. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252308.1
title: StrainInfo SI-ID 252308.1

description: StrainInfo dataset 252308 about a strain of Gliocephalotrichum bulbilium. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252309.1
title: StrainInfo SI-ID 252309.1

description: StrainInfo dataset 252309 about a strain of Sordaria fimicola. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252310.1
title: StrainInfo SI-ID 252310.1

description: StrainInfo dataset 252310 about a strain of Sordaria fimicola. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252311.1
title: StrainInfo SI-ID 252311.1

description: StrainInfo dataset 252311 about a strain of Sordaria fimicola. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252238.1
title: StrainInfo SI-ID 252238.1

description: StrainInfo dataset 252238 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252403.1
title: StrainInfo SI-ID 252403.1

description: StrainInfo dataset 252403 about a strain of Cryptococcus neoformans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252239.1
title: StrainInfo SI-ID 252239.1

description: StrainInfo dataset 252239 about a strain of Yarrowia lipolytica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252240.1
title: StrainInfo SI-ID 252240.1

description: StrainInfo dataset 252240 about a strain of Candida parapsilosis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252241.1
title: StrainInfo SI-ID 252241.1

description: StrainInfo dataset 252241 about a strain of Candida viswanathii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252312.1
title: StrainInfo SI-ID 252312.1

description: StrainInfo dataset 252312 about a strain of Corollospora maritima. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252313.1
title: StrainInfo SI-ID 252313.1

description: StrainInfo dataset 252313 about a strain of Melanocephala australiensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252314.1
title: StrainInfo SI-ID 252314.1

description: StrainInfo dataset 252314 about a strain of Colletotrichum dematium. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252315.1
title: StrainInfo SI-ID 252315.1

description: StrainInfo dataset 252315 about a strain of Epicoccum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252404.1
title: StrainInfo SI-ID 252404.1

description: StrainInfo dataset 252404 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252405.1
title: StrainInfo SI-ID 252405.1

description: StrainInfo dataset 252405 about a strain of Paecilomyces niveus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252406.1
title: StrainInfo SI-ID 252406.1

description: StrainInfo dataset 252406 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252242.1
title: StrainInfo SI-ID 252242.1

description: StrainInfo dataset 252242 about a strain of Aspergillus sojae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252407.1
title: StrainInfo SI-ID 252407.1

description: StrainInfo dataset 252407 about a strain of Myriococcum praecox. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252243.1
title: StrainInfo SI-ID 252243.1

description: StrainInfo dataset 252243 about a strain of Aspergillus sojae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252244.1
title: StrainInfo SI-ID 252244.1

description: StrainInfo dataset 252244 about a strain of Yarrowia lipolytica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252245.1
title: StrainInfo SI-ID 252245.1

description: StrainInfo dataset 252245 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252316.1
title: StrainInfo SI-ID 252316.1

description: StrainInfo dataset 252316 about a strain of Tuberculina maxima. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252317.1
title: StrainInfo SI-ID 252317.1

description: StrainInfo dataset 252317 about a strain of Aphanoascus fulvescens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252318.1
title: StrainInfo SI-ID 252318.1

description: StrainInfo dataset 252318 about a strain of Pichia membranifaciens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252319.1
title: StrainInfo SI-ID 252319.1

description: StrainInfo dataset 252319 about a strain of Aspergillus niger. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252408.1
title: StrainInfo SI-ID 252408.1

description: StrainInfo dataset 252408 about a strain of Thielaviopsis paradoxa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252409.1
title: StrainInfo SI-ID 252409.1

description: StrainInfo dataset 252409 about a strain of Escherichia coli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id252410.1
title: StrainInfo SI-ID 252410.1

description: StrainInfo dataset 252410 about a strain of Basidiobolus haptosporus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.