cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25377/sussex.25118383.v1
title: Stanmer Park outdoor navigational data

description: This dataset contains omnidirectional 1440✕1440 resolution images taken using a Kodak Pixpro SP360 camera paired with RTK GPS information obtained using a simple RTK2B - 4G NTRIP kit and fused yaw, pitch and roll data recorded from a BNO055 IMU. The data was collected using a 4 wheel ground robot that was manually controlled by a human operator. The robot was driven 15 times along a route at Stanmer Park (shown in map.png). The route consists mostly of open fields and a narrow path through a forest and is approximately 700m long. The recordings took place at various days and times starting in March 2021, with the date and time indicated by the filename. For example ‘20210420_135721.zip’ corresponds to a route driven on 20/03/2021 starting at 13:57:21 GMT. During the recordings the weather varied from clear skies and sunny days to overcast and low light conditions. Each recording consists of an mp4 video of the camera footage for the route, and a database_entries.csv file with the following columns:Timestamp of video frame (in ms)X, Y and Z coordinate (in mm) and zone representing location in UTM coordinates from GPSHeading, pitch and roll (in degrees) from IMU. In some early routes, the IMU failed and when this occurs these values are recorded as “NaN”.Speed and Steering angle commands being sent to robot at that timeGPS quality (1=GPS, 2=DGNSS, 4=RTK Fixed and 5=RTK Float)X, Y and Z coordinates (in mm) fitted to a degree one polynomial to smooth out GPS noiseHeading (in degrees) derived from smoothed GPS coordinatesIMU heading (in degrees) with discontinuities resulting from IMU issues fixedFor completeness, each folder also contains a database_entries_original.csv containing the data before pre-processing. The pre-processing is documented in more detail in pre_processing_notes.pdf.
DOI: 10.6084/m9.figshare.c.3615749_d1.v1
title: Additional file 1: Table S1. of DNA-binding sequence specificity of DUX4

description: Oligos used in this study. (XLS 32.5 KB)
DOI: 10.6084/m9.figshare.5131519.v3
title: 1-D Nanoslit and 2-D Squarehole periodic array optical properties - Coupled Mode Theory - Matab GUI

description: Matlab User Interface for the Coupled Mode Theory for Transmission and Reflection spectra of Nanohole arrays for any dimension of the structure and refractive index and metal. Also included is the field distribution around the structure.
DOI: 10.6084/m9.figshare.6741173.v1
title: Supplementary Material for: Effects of Initiation Time of Glycemic Control on Skin Collagen Recovery in Streptozotocin-Induced Diabetic Rats

description: <b><i>Background:</i></b> Diabetes damages the collagen in the skin. No study has investigated the relationship between the treatment initiation time and the degree of collagen recovery. This study aimed to evaluate the effects of the initiation time of glycemic control on collagen recovery and to determine the basic molecules mediating the process. <b><i>Methods:</i></b> Streptozotocin-induced diabetic rats were divided into five groups: normal controls (C), those with untreated diabetes (DM), and those with diabetes treated with daily insulin injections from 7 weeks (7W), 10 weeks (10W), and 13 weeks (13W) after diabetes induction. The levels of collagen and several molecules were compared among skin tissues collected at 14 weeks. <b><i>Results:</i></b> The amounts of total collagen, collagen 1, and collagen 3 were significantly lower in DM than in C. Among the treated groups, recovery reaching normal levels was only observed in 7W and 10W. The earlier the treatment began, the greater was the collagen recovery. Similar to that of collagen, the expression of transforming growth factor-β1 (TGF-β1), vascular endothelial growth factor (VEGF), and insulin-like growth factor 1 receptor (IGF-1R) significantly decreased in DM compared with that in C. Higher recovery of TGF-β1 and VEGF was detected in groups with earlier treatment, whereas the IGF-1R level was identically elevated in all treated groups. The results suggest that these molecules affect collagen recovery at different time points during glycemic control. <b><i>Conclusion:</i></b> The initiation time of glycemic control is expected to have a considerable effect on collagen recovery in the diabetic skin through modulation of TGF-β1, VEGF, and IGF-1R.
DOI: 10.6084/m9.figshare.1434634.v1
title: Database for Verbs in the Dead Sea Scrolls

description: In this volume, Ken M. Penner uses an empirical method to establish that the Qumran authors’ selection of finite verb forms is determined not by aspect, but by tense or modality.
DOI: 10.6084/m9.figshare.5124049.v1
title: Supplementary Material for: Carotid Plaque, Carotid Intima-Media Thickness, and Coronary Calcification Equally Discriminate Prevalent Cardiovascular Disease in Kidney Disease

description: <b><i>Background:</i></b> Despite the significant morbidity and mortality attributable to cardiovascular disease (CVD), risk stratification remains an important challenge in the chronic kidney disease (CKD) population. We examined the discriminative ability of noninvasive measures of atherosclerosis, including carotid intima-media thickness (cIMT), carotid plaque, coronary artery calcification (CAC) and ascending and descending thoracic aorta calcification (TCAC), and Framingham risk score (FRS) to predict self-reported prevalent CVD. <b><i>Methods and Results:</i></b> Participants were enrolled in the cIMT ancillary study of the Chronic Renal Insufficiency Cohort (CRIC) study and also had all of the above measures within an 18-month period. CVD was present in 21% of study participants. C-statistics were used to ascertain the discriminatory power of each measure of atherosclerosis. The study population (n = 220) was 64% male; 51% black and 45% white. The proportion of individuals with estimated glomerular filtration rate ≥60, 45–59, 30–44, and &lt;30 ml/min/1.73 m<sup>2</sup> was 21, 41, 28, and 11%, respectively. In multivariable analyses adjusting for demographic factors, we failed to find a difference between CAC, carotid plaque, and cIMT as predictors of self-reported prevalent CVD (C-statistic 0.70, 95% CI: 0.62–0.78; C-statistic 0.68, 95% CI: 0.60–0.75, and C-statistic 0.64, CI: 0.56–0.72, respectively). CAC was statistically better than FRS. FRS was the weakest discriminator of self-reported prevalent CVD (C-statistic 0.58). <b><i>Conclusions:</i></b> There was a significant burden of atherosclerosis among individuals with CKD, ascertained by several different imaging modalities. We were unable to find a difference in the ability of CAC, carotid plaque, and cIMT to predict self-reported prevalent CVD.
DOI: 10.6084/m9.figshare.1449217.v1
title: Diversity in the deep sea

description: Supporting data for the paper: Mindel, B.L., Neat, F.C., Trueman, C.T., Webb, T.J. & Blanchard, J.L. (2016) Functional, size and taxonomic diversity of fish along a depth gradient in the deep sea. PeerJ, 4:e2387; DOI 10.7717/peerj.2387<br><br>Datasets have been summarised to enable replication of figures and analyses from this paper. Data are provided by Marine Scotland Science from their ongoing deepwater trawl survey. <br><br>Calculate size diversity:<br>Input needed in order to calculate size diversity for each station using the Leinster-Cobbold measure of diversity. 'Class number' and 'Class midpoint' are based on length of individuals. 'Proportional abundance' is the proportion of biomass (based on the previous column 'Kg per hr') that that class accounts for within the station. The method of calculating size diversity (final column) can be found in the main manuscript.<br><br>Diversity and trait values:<br>Data needed to produce Figures 4, 5 and 6 from the paper. Includes values of all measures of diversity examined, plus means and standard deviations of continuous morphological traits as described in the manuscript.<br><br>Guild biomass: <br>Data needed to produce Figure 7 from the paper. Percentage of biomass accounted for in each depth band by each feeding guild.<br><br>Species codes: <br>Translation of species codes to Latin names.<br><br>Species site matrix:<br>One input into the calculation of functional diversity - biomass of each species in each station. The column names are species codes, and their translation to Latin names can be found in 'Species codes'.<br><br><br>
DOI: 10.6084/m9.figshare.5126032.v1
title: Supplementary Material for: A<b><i> Staphylococcus aureus</i></b> TIR Domain Protein Virulence Factor Blocks TLR2-Mediated NF-κB Signaling

description: Signaling through Toll-like receptors (TLRs), crucial molecules in the induction of host defense responses, requires adaptor proteins that contain a Toll/interleukin-1 receptor (TIR) domain. The pathogen <i>Staphylococcus aureus</i> produces several innate immune-evasion molecules that interfere with the host's innate immune response. A database search analysis suggested the presence of a gene encoding a homologue of the human TIR domain in <i>S. aureus</i> MSSA476 which was named staphylococcal TIR domain protein (TirS). Ectopic expression of TirS in human embryonic kidney, macrophage and keratinocyte cell lines interfered with signaling through TLR2, including MyD88 and TIRAP, NF-κB and/or mitogen-activated protein kinase pathways. Moreover, the presence of TirS reduced the levels of cytokines MCP-1 and G-CSF secreted in response to<i> S. aureus</i>. The effects on NF-κB pathway were confirmed using <i>S. aureus</i> MSSA476 wild type, an isogenic mutant MSSA476Δ<i>tirS</i>, and complemented MSSA476Δ<i>tirS +</i>pTirS in a Transwell system where bacteria and host cells were physically separated. Finally, in a systematic mouse infection model, TirS promoted bacterial accumulation in several organs 4 days postinfection. The results of this study reveal a new <i>S. aureus</i> virulence factor that can interfere with PAMP-induced innate immune signaling in vitro and bacterial survival in vivo.
DOI: 10.6084/m9.figshare.28844936.v1
title: Qualitative study on Educator Perception on LLM

description: A study focusing on educators perception on LLMs
DOI: 10.6084/m9.figshare.16649695.v3
title: Network: lter, Domain: mcmurdo

description: MacroSheds timeseries data, shapefiles, and metadata for domain: mcmurdo, within network: lter
DOI: 10.5281/zenodo.15315519
title: Models and dataset for antibody transformer
DOI: 10.5281/zenodo.15315520
title: Models and dataset for antibody transformer
DOI: 10.6084/m9.figshare.19428821.v1
title: Dataset of Positive Politeness Strategies by the Main Characters in <i>The Greatest Showman<i> Movie</i></i>

description: This is the data repository for an undergraduate thesis entitled Politeness Strategies in Main Characters <em>The Greatest Showman </em>Movie. If you use the data in this repository for your research, please cite this work as follows: Aspitasari, Febri; Budiarsa, I Made; Rajeg, Gede Primahadi Wijaya (2022): Dataset of Positive Politeness Strategies in Main Characters The Greatest Showman Movie. figshare. Dataset. https://doi.org/10.6084/m9.figshare.19428821 First Supervisor: Prof. Dr. I Made Budiarsa, M.A. Second Supervisor: Gede Primahadi Wijaya Rajeg, S.S., M.Hum., Ph.D.
DOI: 10.6084/m9.figshare.7418735.v1
title: Moving Average and the Phillips Curve: forecasts for the inflation rate in a sample of developed and developing countries

description: Abstract This study evaluates the inflation forecasts produced by Phillips curve models with and without ARMA modeling of their errors, considering a sample that contains developed and developing countries. The aim of this study is to provide empirical evidence that this simple reformulation of the Phillips curve can serve as a benchmark for studies that propose econometric or time series models more elaborated to predict the rate of inflation. The results show that the use of ARMA components in the Phillips curve decrease considerably its mean square error of forecast for all countries in the sample.
DOI: 10.6084/m9.figshare.23041847.v1
title: Hibiscus syriacus cv. Gangneung Draft Genome

description: Draft genome assembly of Hibiscus syriacus var. Gangneung
DOI: 10.6084/m9.figshare.21804768.v1
title: Data.docx

description: Adolescent mental health
DOI: 10.6084/m9.figshare.13157594.v2
title: personality and cognition_data.xlsx

description: Personality and cognition data - Morris water maze, Active allothetic place avoidance, Open field test, Elevated plus maze test, T-maze test
DOI: 10.6084/m9.figshare.20004335.v6
title: Water availability creates global thresholds in multidimensional soil biodiversity and functions

description: Global field survey to investigate the environmental thresholds of soil biodiversity (bacteria, fungi, protists and invertebrates) and functions (water regulation, plant productivity, nutrient cycling, organic matter decomposition, and plant-microbe interactions).
DOI: 10.6084/m9.figshare.17152610.v1
title: HERD-OUTPUT

description: A comparative study was undertaken to survey nurses working in an acute care nursing unit before and after moving to a new hospital to investigate the impact of a nursing unit designed utilizing Planetree build criteria. <br>
DOI: 10.6084/m9.figshare.25233796.v1
title: Supplementary Material for: Hydroxychloroquine-Induced Renal Phospholipidosis: Case Report and Review of Differential Diagnoses

description: <b><i>Introduction:</i></b> Renal phospholipidosis describes the accumulation of phospholipids in the lysosomes of kidney cells, in particular podocytes. Originally, this was described primarily in the context of the lysosomal storage disorder Fabry disease. It is now known that a variety of drugs can lead to the accumulation of lysosomal phospholipids. <b><i>Case Presentation:</i></b> We present the case of a 69-year-old female patient suffering chronic kidney disease and systemic lupus erythematosus who underwent a kidney biopsy because of a further increase in serum creatinine levels. There was no evidence of lupus nephritis, but electron microscopy showed zebra bodies as a morphological sign of phospholipidosis. This was most likely drug-induced after 25 years of continuous medication with hydroxychloroquine. A renal biopsy 2 years and 6 months earlier, when the renal function of the patient was distinctively better, showed no signs of renal phospholipidosis. Afterward, medication with hydroxychloroquine was discontinued, and renal function parameters remained stable in the 1-year course. <b><i>Conclusion:</i></b> This case raises the question of how severely impaired renal function affects the risk of hydroxychloroquine-induced renal phospholipidosis and underlines that hydroxychloroquine should be administered with caution in patients with kidney insufficiency. Moreover, we provide a review of the causes of renal phospholipidosis, which have been described in the literature and give an overview of possible differential diagnoses in cases with histologically proven phospholipidosis in renal biopsies.
DOI: 10.6084/m9.figshare.21776072.v1
title: Supplementary Material for: Novel Variant in the <b><i>USP9X</i></b> Gene Is Associated with Congenital Heart Disease in a Male Patient: A Case Report and Literature Review

description: <b><i>Introduction:</i></b> The X-chromosomal <i>USP9X</i> gene encodes a deubiquitylating enzyme involved in protein turnover and TGF-β signaling during fetal and neuronal development. <i>USP9X</i> variants in females are primarily associated with complete loss-of-function (LOF) alleles, leading to neurodevelopmental delay and intellectual disability, as well as a wide range of congenital anomalies. In contrast, <i>USP9X</i> missense variants in males often result in partial rather than complete LOF, specifically affecting neuronal migration and development. <i>USP9X</i> variants in males are associated with intellectual disability, behavioral disorders, global developmental delay, speech delay, and structural CNS defects. Facial dysmorphisms are found in almost all patients. <b><i>Case Presentation:</i></b> We report the case of an Italian boy presenting dysmorphism, intellectual disability, structural brain anomalies, and congenital heart disease. Using next-generation sequencing analysis, we identified a hemizygous de novo variant in the <i>USP9X</i> gene (c.5470A&gt;G, p.Met1824Val) that was never reported in the literature. <b><i>Conclusion:</i></b> We provide an overview of the available literature on <i>USP9X</i> variants in males, in order to further expand the genotypic and phenotypic landscape of male-restricted X-linked mental retardation syndrome. Our findings confirm the involvement of <i>USP9X</i> variants in neuronal development and corroborate the possible association between the novel <i>USP9X</i> variant and congenital heart malformation.
DOI: 10.6084/m9.figshare.28747649.v1
title: InterPro data

description: Sequences of the bacterial and eukaryotic ribosomal proteins uL4, uL22 and uL23 (eL39) for MSA studies
DOI: 10.6084/m9.figshare.3833058.v1
title: Potential Correlation Between Hair Color and Gender.csv

description: Method: In order to assess the relationship between hair color and gender, a verbal study was conducted among 24 human subjects who self identified their hair color and gender<br>study site: In a York University Keele Campus classroom<br>Hypothesis: There isn't any correlation between hair color and gender<br>Predictions supprt or reject hypothesis1. There will not be any correlation between hair color and gender may be because genes that correspond to hair color and gender do not correlate.<br><br>group members:Brenda Espin,Shunelle Prasad
DOI: 10.25405/data.ncl.26797480.v1
title: Simulations of bubble nucleation in a cold atom gas

description: The data comes from simulations of bubble nucleation in a cold atom gas for the two main figures in the paper "Seeding Decay of the False Vacuum". The paper abstract reads:"We present a theory of false vacuum decay induced by spherical seeds.The type of seed considered has a boundary characterised by surface energy terms. The theory applies to false vacuum decay at zero and finite temperatures. Seeded nucleation maybe important for enabling future false vacuum decay experiments on analogue systems using Bose Einstein Condensates (BEC). We show that our theory of seeded nucleation at finite temperature applied to a potassium BEC in two spatial dimensions agrees with numerical, real-time, simulations."
DOI: 10.25381/cput.25438444.v1
title: Implementation of an adaptive protection scheme for an hybrid microgrid system with distributed generations

description: Power system data used for the modelling and simulation of the modified IEEE 14-bus system in DIgSILENT PowerFactory and RSCAD simulation environments. The modified IEEE 14-bus system is used as a case study, with a 50 MW wind farm as a distributed generation.
DOI: 10.6084/m9.figshare.12334577.v1
title: AiZynthFinder: a fast, robust and flexible open-source software for retrosynthetic planning

description: This is public data to be used with the aizynthfinder tool for retrosynthesis planning (https://github.com/MolecularAI/aizynthfinder)<br>There are three files available:* full_uspto_03_05_19_rollout_policy.hdf5 - the Keras neural network model used as rollout policy* full_uspto_03_05_19_unique_templates.hdf5 - unique template codes that are used together with the policy to generate new precursors in the tree search* zinc_stock_17_04_20.hdf - stock file made from the ZINC database on 17:th of april 2020.
DOI: 10.6084/m9.figshare.24885036.v1
title: Supplementary Material for: Exploring the relationship between lesion morphology and pathogenesis in acute small subcortical infarction

description: Introduction
Acute small subcortical infarctions (SSIs) result from occlusions of small penetrating arteries, and the underlying pathological factors can have different clinical implications. The objective of this study was to assess the clinical relevance of acute SSIs based on their sizes and morphologies.
Methods 
This retrospective case-control study analyzed clinical and imaging data of stroke patients with acute SSIs in penetrating artery territories who underwent MRI within 5 days of stroke onset, registered between 2016 and 2020. We categorized these patients into three groups based on size and morphology: diameter &lt; 20mm, diameter ≧ 20mm, and separated lesions. We then evaluated their clinical characteristics and outcomes.
Results 
We analyzed 726 stroke patients with SSIs, among whom 573 had a diameter &lt;20mm, 99 had a diameter ≥20mm, and 54 had separated lesions. The patients had a median age of 70 years and a median National Institutes of Health Stroke Scale (NIHSS) score of 4 on arrival. Patients who experienced early neurological deterioration (END) had a significantly lower chance of good functional outcomes (27.3% vs. 64.4%, p&lt;0.001). Patients with a diameter ≧20mm had the most severe NIHSS on arrival and at day 3, the highest rate of END, and the lowest rate of good outcome at 3 months. The incidence of cardioembolism did not differ between patients with diameters of ≥20mm and &lt;20mm. However, multiple logistic regression analysis revealed that separated lesions were more likely to be associated with cardioembolic stroke (adjusted odds ratio [aOR], 7.6; 95% confidence interval [CI], 2.0–28.5) and parent artery stenosis &gt;50% (aOR, 3.8; 95% CI, 2.1–7.0) than a diameter of &lt;20mm. Moreover, SSIs with a diameter of ≥20mm was found to be associated with an increased risk of END compared to that with a diameter of &lt;20mm (aOR, 2.9; 95% CI, 1.7–5.2).
Conclusion
Our study suggests that the sizes and morphologies of acute SSIs may indicate different underlying pathologies and be linked to diverse clinical outcomes. Our findings also challenge the current imaging criteria for embolic stroke of undetermined source, as we did not find a link between large subcortical infarction and cardioembolic stroke.
DOI: 10.17608/k6.auckland.28079666.v1
title: List of articles for a systematic review on student explanations in tertiary mathematics and statistics education (2014-2024)

description: List of peer-reviewed articles included in the systematic literature review on student-generated explanation in tertiary mathematics and statistics education
DOI: 10.6084/m9.figshare.25907752.v1
title: Analysis of the heterogeneity and complexity of murine extraorbital lacrimal gland via single-cell RNA sequencing

description: Our findings reveal the diversity of cell types in the lacrimal gland and their transcriptomic profiles. More importantly, this study provides a dataset that serves as a resource, deepening our understanding of the development, composition, and function of the lacrimal glands, as well as the pathogenesis of lacrimal gland diseases. Over 37 subclasses of cells were identified, including seven types of glandular epithelial cells, three types of fibroblasts, ten types of myeloid-derived immune cells, at least eleven types of lymphoid-derived immune cells, and five types of vascular-associated cell subsets. The cell-cell communication network analysis revealed that fibroblasts and immune cells play a pivotal role in the dense intercellular communication network within the mouse ELG.
DOI: 10.6084/m9.figshare.27058474.v2
title: Heterochronic development of the perception of different types of visual illusions - DATABASE

description: Dataset for article: Development of the perception of different types of visual illusions, published in Developmental Neuroscience.