cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7282/00000503
title: Data set from allometry study on Norway maple branches

description: This dataset contains data collected during Dr. Gregory Dahle’s doctoral studies. Sampling occurred at Rutgers University Horticultural Farm III, located in East Brunswick, Middlesex County, New Jersey, USA. Four Acer platanoides trees growing on the perimeter of a mixed species plantation were randomly selected. A total of four trees were sampled during summers of 2005 and 2006. All sampling began after terminal bud set. Only branches growing on the exterior half of the trees were sampled encompassing the complete vertical height of the given tree. Branches were labeled as first order (arising from the central trunk), second order, or third order. The original dataset was analyzed and published as a dissertation (Dahle 2009) and a journal article (Dahle and Grabosky 2010). Additional analysis of the original data set took place in 2024 & 2025 by Chuck Price and a manuscript has been submitted for review in PLOS ONE (Price et al 2025 in review). The excel file contains seven worksheets. ‘Description’ contains the sheet metadata that defines the primary data set ‘Dahle Norway Maple 2005-2006’ contains the primary data set ‘Area Ratio’ contains Branch Area Ratios‘ForSMART’ data used in SMA regression analysis‘Sheet1’ data used for calculating area and volume‘Table1’ is table prepared for 2025 manuscript Price et al. 2025 in review ‘Figures’ figures prepared for 2025 manuscript Price et al. 2025 in review Citations Dahle, GA. 2009. How the hydraulic and mechanical properties of wood influence branch form in Norway maple (Acer platanoides L.). Doctorate of Philosophy Dissertation. Rutgers University, New Brunswick New Jersey, 156 pp Dahle, GA and JC Grabosky. 2010. Allometric patterns in Acer platanoides (Aceraceae) branches. Trees-Structure Function Price C, GA Dahle, J Grabosky. Flow similarity model predicts allometric relationships among Acer platanoides branches. PLOS One in review as: PONE-D-25-10084 Please contact Dr. Gregory Dahle gregory.dahle@mail.wvu.edu for more information
DOI: 10.5281/zenodo.15359632
title: CorGeS - The Corpus of German Suicide Notes

description: The Corpus of German Suicide Notes, short CorGeS (pronounced like the plural noun for the dog breed), is a collection of transcribed suicide notes from the 1910s to 1930s. The corpus comprises a total of 118 cases. All notes were collected by a police officer and were retyped or rewritten in the collection process. Some of the notes were left in relation to attempted suicides, while four notes are presumably not related to a suicide, but remain in the dataset for full disclosure. For some cases more than one note has been collected, so the full corpus contains 140 files/notes. The corpus comprises around 24000 tokens (not incuding the handwritten notes, which are currently being transcribed). The corpus is currently non-anonymised and available either as text files, PDF scans of letters, or the full physical folder containing the documents, and is only available by specific application as it contains personal information of the deceased.
DOI: 10.5281/zenodo.15359633
title: CorGeS - The Corpus of German Suicide Notes

description: The Corpus of German Suicide Notes, short CorGeS (pronounced like the plural noun for the dog breed), is a collection of transcribed suicide notes from the 1910s to 1930s. The corpus comprises a total of 118 cases. All notes were collected by a police officer and were retyped or rewritten in the collection process. Some of the notes were left in relation to attempted suicides, while four notes are presumably not related to a suicide, but remain in the dataset for full disclosure. For some cases more than one note has been collected, so the full corpus contains 140 files/notes. The corpus comprises around 24000 tokens (not incuding the handwritten notes, which are currently being transcribed). The corpus is currently non-anonymised and available either as text files, PDF scans of letters, or the full physical folder containing the documents, and is only available by specific application as it contains personal information of the deceased.
DOI: 10.60635/c3b896
title: Agua Salud, Celestino Tower_Precipitation

description: Agua Salud Celestino Tower.
 Two sensors: north and south
 Location 9.21142N, 79.72656W
 Precipitation, interval total
 Established in 2015 and is located at the eastern edge of the Soberania Nation Park, in an area of pastures and forest patches. The tower is 40ft (12.2m) tall.
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Agua_Salud_Celestino_Tower_Precipitation/10042565
DOI: 10.60635/c36k79
title: Agua Salud, Celestino Tower_Relative Humidity

description: Agua Salud Celestino Tower.
 Location 9.21142N, 79.72656W
 Relative Humidity, interval max/min/avg
 Established in 2015 and is located at the eastern edge of the Soberania Nation Park, in an area of pastures and forest patches. The tower is 40ft (12.2m) tall.
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Agua_Salud_Celestino_Tower_Relative_Humidity/10042589
DOI: 10.60635/c32s40
title: Agua Salud, Celestino Tower_Solar Radiation, PAR

description: Agua Salud Celestino Tower.
 Two sensors, North and South
 Location 9.21142N, 79.72656W
 Photosynthetically Active Radiation (PAR), interval average
 Established in 2015 and is located at the eastern edge of the Soberania Nation Park, in an area of pastures and forest patches. The tower is 40ft (12.2m) tall.
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Agua_Salud_Celestino_Tower_Solar_Radiation_PAR/10042580
DOI: 10.60635/c3z32d
title: Agua Salud, Celestino Tower_Solar Radiation, Pyranometer

description: Agua Salud Celestino Tower.
 Two sensors: North and South
 Location 9.21142N, 79.72656W
 Solar Radiation, Pyranometer, Interval average
 Established in 2015 and is located at the eastern edge of the Soberania Nation Park, in an area of pastures and forest patches. The tower is 40ft (12.2m) tall.
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Agua_Salud_Celestino_Tower_Solar_Radiation_Pyranometer/10042583
DOI: 10.15468/dl.fyu6ke
title: Occurrence Download

description: A dataset containing 2065 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (USA.7_1, USA.22_1, USA.40_1, USA.46_1, USA.30_1, USA.20_1)",
 "OccurrenceStatus is Present",
 "TaxonKey is Ficaria verna Huds."
 ]
}

 The dataset includes 2065 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020030-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h58mvf
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-71.27934 -18.11918,-68.64431 -16.93416,-71.35319 -14.34607,-76.17773 -15.38256,-71.27934 -18.11918))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Leucocarbo bougainvilliorum (Lesson, 1837)",
 "Year 2021-2025"
 ]
}

 The dataset includes 12 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020029-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60635/c3t89j
title: Agua Salud, Celestino Tower_Wind Direction

description: Agua Salud Celestino Tower.
 Location 9.21142N, 79.72656W
 Wind Direction, interval mean vector and standard deviation
 Established in 2015 and is located at the eastern edge of the Soberania Nation Park, in an area of pastures and forest patches. The tower is 40ft (12.2m) tall.
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Agua_Salud_Celestino_Tower_Wind_Direction/10042601
DOI: 10.5281/zenodo.14008356
title: SDDF Energy Dataset
title: SDDF-Energy-2025Q1

description: This conformational energy dataset, developed as part of the Smart Distributed Data Factory (SDDF) project, contains over 2.75 million molecular conformations based on drug-like molecules sourced from the ENAMINE database. Energies were calculated using DFT with the ωB97x density functional and the 6–31G(d) basis set. The conformations were generated from SMILES using RDKit, MMFF94 optimization, and molecular dynamics (MD) simulations, providing a diverse set of molecular structures and energy states.



RDKit Conformations: 1,123,693

RDKit + MMFF94 Optimized: 1,151,936

MD-Generated: 483,279


This dataset serves as a benchmark for energy prediction models, with training (638,617 examples), validation (134,732 examples), and test subsets (24,890 examples) created using a strict scaffold-based split to ensure no overlap and less than 70% similarity between the training and test sets.

Dataset contents:



data.tar.gz: contains the conformations in Structured Data File format, grouped into separate folders based on the molecule ID. Each conformation's label is provided within its SDF file as a property named "energy".

INDEX.smi: specifies the molecule IDs and their corresponding SMILES.

SOURCES.csv: specifies the conformation generation method for each conformation.

SDDF_train.tsv, SDDF_validation.tsv, and SDDF_test.tsv specify the molecule IDs and conformations for each subset of the benchmark.


A detailed description is provided in the accompanying paper.
DOI: 10.5281/zenodo.14008357
title: SDDF Energy Dataset
title: SDDF-Energy-2024Q3

description: This conformational energy dataset, developed as part of the Smart Distributed Data Factory (SDDF) project, contains over 2.17 million molecular conformations based on drug-like molecules sourced from the ENAMINE database. Energies were calculated using DFT with the ωB97x density functional and the 6–31G(d) basis set. The conformations were generated from SMILES using RDKit, MMFF94 optimization, and molecular dynamics (MD) simulations, providing a diverse set of molecular structures and energy states.



RDKit Conformations: 535,338

RDKit + MMFF94 Optimized: 1,151,936

MD-Generated: 483,279


This dataset serves as a benchmark for energy prediction models, with training (638,617 examples), validation (134,732 examples), and test subsets (24,890 examples) created using a strict scaffold-based split to ensure no overlap and less than 70% similarity between the training and test sets.

Dataset contents:



data.tar.gz: contains the conformations in Structured Data File format, grouped into separate folders based on the molecule ID. Each conformation's label is provided within its SDF file as a property named "energy".

INDEX.smi: specifies the molecule IDs and their corresponding SMILES.

SOURCES.csv: specifies the conformation generation method for each conformation.

SDDF_train.tsv, SDDF_validation.tsv, and SDDF_test.tsv specify the molecule IDs and conformations for each subset of the benchmark.


A detailed description is provided in the accompanying paper.
DOI: 10.5281/zenodo.15359529
title: SDDF Energy Dataset
title: SDDF-Energy-2025Q1

description: This conformational energy dataset, developed as part of the Smart Distributed Data Factory (SDDF) project, contains over 2.75 million molecular conformations based on drug-like molecules sourced from the ENAMINE database. Energies were calculated using DFT with the ωB97x density functional and the 6–31G(d) basis set. The conformations were generated from SMILES using RDKit, MMFF94 optimization, and molecular dynamics (MD) simulations, providing a diverse set of molecular structures and energy states.



RDKit Conformations: 1,123,693

RDKit + MMFF94 Optimized: 1,151,936

MD-Generated: 483,279


This dataset serves as a benchmark for energy prediction models, with training (638,617 examples), validation (134,732 examples), and test subsets (24,890 examples) created using a strict scaffold-based split to ensure no overlap and less than 70% similarity between the training and test sets.

Dataset contents:



data.tar.gz: contains the conformations in Structured Data File format, grouped into separate folders based on the molecule ID. Each conformation's label is provided within its SDF file as a property named "energy".

INDEX.smi: specifies the molecule IDs and their corresponding SMILES.

SOURCES.csv: specifies the conformation generation method for each conformation.

SDDF_train.tsv, SDDF_validation.tsv, and SDDF_test.tsv specify the molecule IDs and conformations for each subset of the benchmark.


A detailed description is provided in the accompanying paper.
DOI: 10.6084/m9.figshare.28734815
title: Supplementary Data

description: Supplementary data including PCR primer sequences, RNAscope probe catalog numbers, and snRNAseq data.
DOI: 10.6084/m9.figshare.28726565
title: UMAP_Males_AGPCRs.pdf

description: UMAP for snRNAseq of male mouse kidneys
DOI: 10.6084/m9.figshare.28726577
title: UMAP_Females_AGPCRS.pdf

description: UMAP for snRNAseq of female mouse kidneys
DOI: 10.6084/m9.figshare.28726586
title: MaleFinalGeneList_VlnPlot.pdf

description: Violin plot to support cluster generation for snRNAseq of male mouse kidneys
DOI: 10.6084/m9.figshare.28726586.v1
title: MaleFinalGeneList_VlnPlot.pdf

description: Violin plot to support cluster generation for snRNAseq of male mouse kidneys
DOI: 10.6084/m9.figshare.28726595
title: FemaleFinalGeneList_VlnPlot.pdf

description: Violin plot to support cluster generation for snRNAseq of female mouse kidneys
DOI: 10.60635/c3pk7n
title: Agua Salud, Celestino Tower_Wind Speed

description: Agua Salud Celestino Tower.
 Location 9.21142N, 79.72656W
 Wind Speed, Interval max/min/avg
 Established in 2015 and is located at the eastern edge of the Soberania Nation Park, in an area of pastures and forest patches. The tower is 40ft (12.2m) tall.
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Agua_Salud_Celestino_Tower_Wind_Speed/10042571
DOI: 10.15468/dl.f363ce
title: Occurrence Download

description: A dataset containing 1215 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "GadmGid is ESP.12_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Arctotheca calendula (L.) Levyns"
 ]
}

 The dataset includes 1215 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020031-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15359623
title: upplementary Data for Benthic Diatoms Study, Iraq and R script

description: This deposit contains supplementary materials for the manuscript titled “Benthic Diatoms as Indicators of River Restoration Success”, submitted to Web Ecology. The Excel file includes water quality parameters and Diatom Index of Biotic Integrity (DIBI) scores collected from restored and unrestored sites along the Shatt Al-Hillah River, Iraq. The accompanying R script provides reproducible code for statistical analyses including ANOVA, PCA, and boxplots used in the study. These resources support transparency and reproducibility of ecological assessments in semi-arid river systems.
DOI: 10.5281/zenodo.15359624
title: upplementary Data for Benthic Diatoms Study, Iraq and R script

description: This deposit contains supplementary materials for the manuscript titled “Benthic Diatoms as Indicators of River Restoration Success”, submitted to Web Ecology. The Excel file includes water quality parameters and Diatom Index of Biotic Integrity (DIBI) scores collected from restored and unrestored sites along the Shatt Al-Hillah River, Iraq. The accompanying R script provides reproducible code for statistical analyses including ANOVA, PCA, and boxplots used in the study. These resources support transparency and reproducibility of ecological assessments in semi-arid river systems.
DOI: 10.60635/c3js5q
title: Fortuna, Clearing_Relative Humidity, Electronic

description: Fortuna station (Centro de Investigaciones Jorge L. Arauz)Relative Humidity, Electronic, Daily value max/min/averageTower station, 18mLocation: 8° 43.340'N, 82° 14.241'WLocated in the highlands of the Chiriqui Province, in western Panama.
DOI: 10.57745/5r4isa
title: tableau_tee_multiplication.tab

description: :unav
DOI: 10.57745/cwxtad
title: tableau_tee_addition.tab

description: :unav
DOI: 10.57745/eekxdn
title: tableau_eduthes_addition.pdf

description: :unav
DOI: 10.57745/g49bzt
title: tableau_tee_multiplication.pdf

description: :unav
DOI: 10.57745/np0atb
title: tableau_eduthes_multiplication.tab

description: :unav
DOI: 10.57745/rlaa5d
title: tableau_eduthes_addition.tab

description: :unav
DOI: 10.57745/wmzxyy
title: tableau_tee_addition.pdf

description: :unav
DOI: 10.57745/xopqvt
title: tableau_eduthes_multiplication.pdf

description: :unav
DOI: 10.60635/c3f31c
title: Fortuna Clearing Air Temperature; Manual

description: Fortuna station (Centro de Investigaciones Jorge L. Arauz)Air Temperature, Manual, Daily max/minNorth & South ClearingLocation: 8° 43.340'N, 82° 14.241'WLocated in the highlands of the Chiriqui Province, in western Panama.
DOI: 10.15468/dl.2mn453
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eugenia dombeyi (Spreng.) Skeels",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Occurrence evidence)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020033-250426092105405/datasets/export for details.
DOI: 10.60635/c3990t
title: Fortuna, Clearing_Air Temperature

description: Air Temperature, Interval value
 Fortuna station (Centro de Investigaciones Jorge L. Arauz)
 North Clearing shelter
 Location: 8° 43.340'N, 82° 14.241'W
 Located in the highlands of the Chiriqui Province, in western Panama.
 There are three sensor locations: north clearing, south clearing, and a 15m tower.
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Fortuna_Clearing_Air_Temperature/10042607
DOI: 10.25545/zcxqmo
title: Transforming Aluminium Waste: Sustainable Conversion to Commercial MOFs, Hydrogen Fuel, and Essential Aluminium Feedstocks

description: Raw data that underpins our work: Transforming Aluminium Waste: Sustainable Conversion to Commercial MOFs, Hydrogen Fuel, and Essential Aluminium Feedstocks
DOI: 10.25545/zcxqmo/c2nrgo
title: RawDataH2-Dross-MOFs.rar

description: RawDataH2-Dross-MOFs
DOI: 10.60635/c35k6m
title: Fortuna, Clearing_Precipitation

description: Precipitation, Daily total
 Fortuna station (Centro de Investigaciones Jorge L. Arauz)
 Location: 8° 43.340'N, 82° 14.241'W
 Located in the highlands of the Chiriqui Province, in western Panama.
 There are three sensor locations: north clearing, south clearing, and a 15m tower.
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Fortuna_Clearing_Precipitation/10042619
DOI: 10.60635/c31s52
title: Fortuna, Clearing_Relative Humidity, Manual

description: Relative Humidity, Manual, Daily wet/dry bulb temperature/Relative Humidity
 Fortuna station (Centro de Investigaciones Jorge L. Arauz)
 Location: 8° 43.340'N, 82° 14.241'W
 Located in the highlands of the Chiriqui Province, in western Panama.
 There are three sensor locations: north clearing, south clearing, and a 15m tower.
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Fortuna_Clearing_Relative_Humidity_Manual/10042613
DOI: 10.15468/dl.635pgu
title: Occurrence Download

description: A dataset containing 311 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sphenostylis stenocarpa (Hochst. ex A.Rich.) Harms",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Occurrence evidence)"
 ]
}

 The dataset includes 311 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020034-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60635/c3x31q
title: Fortuna, Tower_Air Temperature

description: Air temperature, Electronic sensor, Interval value
 Fortuna station (Centro de Investigaciones Jorge L. Arauz)
 Location: 8° 43.340'N, 82° 14.241'W
 Located in the highlands of the Chiriqui Province, in western Panama.
 There are three sensor locations: north clearing, south clearing, and a 15m tower.
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Fortuna_Tower_Air_Temperature/10042628
DOI: 10.60635/c3sc8w
title: Fortuna, Tower_Solar Radiation, Pyranometer

description: Solar Radiation, Pyranometer, Interval max/min/avg
 Fortuna station (Centro de Investigaciones Jorge L. Arauz)
 Tower 15m
 Location: 8° 43.340'N, 82° 14.241'W
 Located in the highlands of the Chiriqui Province, in western Panama.
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Fortuna_Tower_Solar_Radiation_Pyranometer/10042616
DOI: 10.5281/zenodo.15359710
title: trichosanthes_kinabaluensis_spades_01.fasta.gz
DOI: 10.5281/zenodo.15359711
title: trichosanthes_kinabaluensis_spades_01.fasta.gz
DOI: 10.15468/dl.46mmfs
title: Occurrence Download

description: A dataset containing 2310 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepus saxatilis F.Cuvier, 1823"
 ]
}

 The dataset includes 2310 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020035-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60635/c3nk6z
title: Fortuna, Tower_Wind Direction

description: Wind Direction, Interval mean vector and standard deviation
 Fortuna station (Centro de Investigaciones Jorge L. Arauz)
 Tower 15m
 Location: 8° 43.340'N, 82° 14.241'W
 Located in the highlands of the Chiriqui Province, in western Panama.
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Fortuna_Tower_Wind_Direction/10042646
DOI: 10.15468/dl.st4hyu
title: Occurrence Download

description: A dataset containing 56726 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-2000.0",
 "GadmGid is USA.3.3_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 56726 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020032-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc5bgzx
title: CCDC 159029: Experimental Crystal Structure Determination

description: Related Article: S.W.Schweiger, D.L.Tillison, M.G.Thorn, P.E.Fanwick, I.P.Rothwell|2001|J.Chem.Soc.,Dalton Trans.||2401|doi:10.1039/b101723n
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5bh0z
title: CCDC 159030: Experimental Crystal Structure Determination

description: Related Article: S.W.Schweiger, D.L.Tillison, M.G.Thorn, P.E.Fanwick, I.P.Rothwell|2001|J.Chem.Soc.,Dalton Trans.||2401|doi:10.1039/b101723n
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.