cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14393190
title: Ranked members - Cos et al. 2024 - Near-Term Mediterranean Summer Temperature Climate Projections: A Comparison of Constraining Methods

description: Reference journal article: 

Cos, P., Marcos-Matamoros, R., Donat, M., Mahmood, R., & Doblas-Reyes, F. J. (2024). Near-Term Mediterranean Summer Temperature Climate Projections: A Comparison of Constraining Methods. Journal of Climate, 37(17), 4367-4388. https://doi.org/10.1175/JCLI-D-23-0494.1

 

Example of code to read the YAML files:

#######################################
################## R ##################
#######################################

# install.packages("yaml")
library(yaml)
file <- 'RankedMembers_accumyears9_constraintregionGlobal_ensemble209.yaml'
member_list <- yaml.load_file(file)
print(member_list[['s1970']][1:30])  # to get the best 30 members for the start date 1970

#######################################
################ Python ###############
#######################################

# pip install pyyaml
import yaml
file = 'RankedMembers_accumyears9_constraintregionGlobal_ensemble209.yaml'
with open(file, "r") as f:
  member_list = yaml.safe_load(f)
print(member_list['s1970'][0:30]) # to get the best 30 members for the start date 1970
DOI: 10.5281/zenodo.14393191
title: Ranked members - Cos et al. 2024 - Near-Term Mediterranean Summer Temperature Climate Projections: A Comparison of Constraining Methods

description: Reference journal article: 

Cos, P., Marcos-Matamoros, R., Donat, M., Mahmood, R., & Doblas-Reyes, F. J. (2024). Near-Term Mediterranean Summer Temperature Climate Projections: A Comparison of Constraining Methods. Journal of Climate, 37(17), 4367-4388. https://doi.org/10.1175/JCLI-D-23-0494.1

 

Example of code to read the YAML files:

#######################################
################## R ##################
#######################################

# install.packages("yaml")
library(yaml)
file <- 'RankedMembers_accumyears9_constraintregionGlobal_ensemble209.yaml'
member_list <- yaml.load_file(file)
print(member_list[['s1970']][1:30])  # to get the best 30 members for the start date 1970

#######################################
################ Python ###############
#######################################

# pip install pyyaml
import yaml
file = 'RankedMembers_accumyears9_constraintregionGlobal_ensemble209.yaml'
with open(file, "r") as f:
  member_list = yaml.safe_load(f)
print(member_list['s1970'][0:30]) # to get the best 30 members for the start date 1970
DOI: 10.6084/m9.figshare.c.3614186_d1
title: Additional file 1: Table S1. of Stool microbiota composition is associated with the prospective risk of Plasmodium falciparum infection

description: Taxonomic composition of Dirichlet components DC1 and DC2. Table S2. Fit of DMM modeling for various values of K (the number of Dirichlet components). Best fit is highlighted in red. Table S3. Taxonomic composition of Dirichlet components CC1 through CC9. Table S4. Distribution of samples from the four cohorts (Mali, HMP, Malawi, and MSD) in the 9 Dirichlet components (CC1 through CC9). Table S5. Fit of DMM modeling for various values of K (the number of Dirichlet components) for P. falciparum infection status analysis. Best fit is highlighted in red. Table S6. Taxonomic composition of Dirichlet components PP1, PP2, PN1, and PN2. Table S7. Taxonomic composition of Dirichlet components FM1 and FM2. Table S8. Cox model of DMM Component: Time to Infection. Figure S1. Increase in microbial taxa diversity with age in the Malian cohort. For each stool microbiota sample, the alpha diversity on the y-axis was plotted against the individual’s age in years (x-axis). The blue lines are the linear model fits and all of them have positive slope (P
DOI: 10.6084/m9.figshare.c.3614192_d1
title: Additional file 1: Table S1. of High-risk oral leukoplakia is associated with aberrant promoter methylation of multiple genes

description: List of primers for MSP. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.c.3614180_d5
title: Additional file 6: Figure S1. of Analysis of primary visual cortex in dementia with Lewy bodies indicates GABAergic involvement associated with recurrent complex visual hallucinations

description: Neurodegenerative Disease Pathology in the Occipital Lobe in (A) Control and (B) Alzheimer’s disease cases. Representative staining for α-synuclein, Aβ (4G8), and hyperphosphorylated tau (AT8) in primary visual cortex (BA17), secondary visual cortex (BA18), and lateral occipital cortex (BA37) in A) elderly normal control or in B) AD individuals. An absence of α-synuclein pathology was seen in BA17 in either AD or controls cases. Similarly, an absence of AT8 (hyperphosphorylated tau) staining was seen in BA17 in controls, but increasing levels were seen in BA17, BA18 and BA37 in AD. Aβ (4G8 antibody) pathology was present in all cortical regions examined with high levels seen in BA17 in AD cases and in other cortical regions examined. Photomicrographs were taken at x2.5 magnification (upper rows) or at x40 magnification (lower rows) with scale bars at 1000 μm (upper rows) or 50 μm (lower rows). (ZIP 1315 kb)
DOI: 10.6084/m9.figshare.c.3614192_d2
title: Additional file 2: Table S2. of High-risk oral leukoplakia is associated with aberrant promoter methylation of multiple genes

description: Clinicopathological information of OL and OSCC cases. (XLSB 33 kb)
DOI: 10.6084/m9.figshare.c.3614204_d1
title: Additional file 1: of Morphometrics and stable isotopes differentiate wintering populations of a migratory bird

description: Wheatears Africa. (CSV 12 kb)
DOI: 10.6084/m9.figshare.c.3614234_d3
title: Additional file 7: of Identification and expression analysis of genes related to calyx persistence in Korla fragrant pear

description: The top 20 KEGG pathways enrichment of DEGs in SC_zf vs TL_zf. (XLS 1Â kb)
DOI: 10.6084/m9.figshare.c.3614207_d5
title: Additional file 1 of Improving cell mixture deconvolution by identifying optimal DNA methylation libraries (IDOL)

description: Table S1. Summary of cell distribution measurements/cell mixture adjustment, among random sample of EWAS published in 2015. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3614234_d4
title: Additional file 1: of Identification and expression analysis of genes related to calyx persistence in Korla fragrant pear

description: GO enrichment of DEGs in SC_hua vs TL_hua. GO_accession: The ID of nodal point. Description: GO description. Term_type: The category of GO. Over_represented_pValue: The pValue of enrichment. Corrected_pValue: The pValue is after correction. DEG_item: The DEGs related to this GO. DEG_list: All the DEGs annotated in GO. Bg_item: The background genes related to this GO. Bg_list: The background genes annoted in this GO. Gene_names: The DEGsâ   ID related to this GO. (XLS 130Â kb)
DOI: 10.4228/zalf.1994.113
title: Weather Data 1994, Muencheberg, Germany

description: The automatic weather station Müncheberg was installed in 1991 by the Leibniz-Centre for Agricultural Landscape Research (ZALF) e.V. and is managed by the Institute of Landscape System Analysis. The station is located within the municipality Müncheberg, district Märkisch-Oderland, state Brandenburg, Germany. Altitude in meter: 62 NN, Geographic latitude: 52,517681 N, Geographic longitude: 14,123200 E,Type: FMA 86. In 2001, the station was replaced by a new system of the same type. In 1994, data have been collected for: leaf wetness (%); soil temperatur in 20cm depth (°C); soil temperatur in 5cm depth (°C); soil temperatur in 50cm depth (°C); global radiation (J/cm²); relative humidity (%); air temperature, 20cm above ground (°C); air temperature, 2m above ground (°C); precipitation (mm); wind velocity(m/s); evaporation (mm)
DOI: 10.6084/m9.figshare.c.3614273_d8
title: Additional file 4: of The Mycobacterium tuberculosis transcriptional landscape under genotoxic stress

description: Functional prediction of DE hypothetical proteins. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3614360_d3
title: Additional file 3: Figure S3. of T cells in multiple myeloma display features of exhaustion and senescence at the tumor site

description: Differential expression of exhaustion and senescent markers in T cells in myeloma BM and PB of newly diagnosed and treated patients. Expression on CD4+ T cells in the bone marrow (Figure S3a), CD4+ T cells in PB (Figure S3b), and CD8+ T cells in PB (Figure S3c). (ZIP 192 kb)
DOI: 10.6084/m9.figshare.c.3614432_d1
title: Additional file 1: Table S1. of Cross-sectional study of Fasciola gigantica and other trematode infections of cattle in Edu Local Government Area, Kwara State, north-central Nigeria

description: General characterisitics of households surveyed in Edu LGA, Kwara State. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3614429_d3
title: Additional file 5: Table S3. of Genome-wide identification of Drosophila dorso-ventral enhancers by differential histone acetylation analysis

description: Spreadsheet showing all identified DV enhancers that overlap a geneâ  s TSS, the assigned gene and its expression in the DV mutants, H3K27ac and transcription factor ChIP enrichment, and overlap with known DV enhancers and Vienna Tiles. (XLSX 147 kb)
DOI: 10.6084/m9.figshare.c.3614432_d2
title: Additional file 2: Table S2. of Cross-sectional study of Fasciola gigantica and other trematode infections of cattle in Edu Local Government Area, Kwara State, north-central Nigeria

description: Univariate analysis of trematode infections in cattle based on household and cattle data in Edu, Kwara State, Nigeria. (XLSX 16 kb)
DOI: 10.15468/dl.u86hme
title: Occurrence Download

description: A dataset containing 1383 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Pachliopta hector (Linnaeus, 1758)"
 ]
}

 The dataset includes 1383 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033163-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3614438_d1
title: Additional file 9: of Distinct transcriptome responses to water limitation in isohydric and anisohydric grapevine cultivars

description: List of the 11,389 genes significantly modulated in berries under our experimental conditions. (XLSX 4896 kb)
DOI: 10.6084/m9.figshare.c.3614429_d5
title: Additional file 4: Table S2. of Genome-wide identification of Drosophila dorso-ventral enhancers by differential histone acetylation analysis

description: Spreadsheet of all distal identified DV enhancers, the assigned gene and its expression in the DV mutants, H3K27ac and transcription factor ChIP enrichment, overlap with known DV enhancers and Vienna Tiles, enrichment for transcription factor motifs, and classification as high confidence enhancers (used in Fig.5). (XLSX 256 kb)
DOI: 10.6084/m9.figshare.c.3614438_d2
title: Additional file 5: of Distinct transcriptome responses to water limitation in isohydric and anisohydric grapevine cultivars

description: List of the differentially modulated genes clustered by time points (T1, T2 and T3). (XLSX 251 kb)
DOI: 10.6084/m9.figshare.c.3614429_d6
title: Additional file 2: Table S1. of Genome-wide identification of Drosophila dorso-ventral enhancers by differential histone acetylation analysis

description: Spreadsheet showing known DV enhancers assembled from the literature that were used in this study. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3614441_d3
title: Additional file 1: of C/D box sRNA-guided 2′-O-methylation patterns of archaeal rRNA molecules

description: Identified archaeal C/D box sRNAs and predicted rRNA target sites. (Sheet 1) The identified C/D box sRNAs are listed for each of the seven archaeal species along with their genomic coordinates and orientation. The box C/C′ and box D/D′ sequences are in red and green respectively. (Sheet 2) The predicted sites of 2′-O-ribose methylation in 16S and 23S rRNA for the sRNAs are listed. Predictions are based on the criteria stated in the methods section. Some guides are predicted to have more than one target. Guides that did not meet the prediction criteria are indicated by NP (No Prediction); many of these have predicted targets in tRNAs or 5S rRNA that are not catalogued. Predictions followed by an asterisk (*) indicate that there is a mismatch base pair at the target site in the region of guide-target complementarity; in these instances the second guide in the sRNA has a predicted target that is within 100 nts of the mismatch site. (XLSX 104 kb)
DOI: 10.6084/m9.figshare.c.3614438_d3
title: Additional file 8: of Distinct transcriptome responses to water limitation in isohydric and anisohydric grapevine cultivars

description: List of genes differentially modulated in leaves during recovery from water stress (RWS). (XLSX 318 kb)
DOI: 10.6084/m9.figshare.c.3614447_d1
title: Additional file 1: of Clam focal and systemic immune responses to QPX infection revealed by RNA-seq technology

description: Sequence summary of M. mercenaria de novo assembled transcriptome. This is a Microsoft Excel worksheet that contains descriptions and annotation information of individual transcript sequences. (XLSX 6600 kb)
DOI: 10.6084/m9.figshare.c.3614474_d2
title: Additional file 16: Table S10. of A systematic comparison of copy number alterations in four types of female cancer

description: Top bio functions and top canonical pathways of the Venn diagram. Table S10 exhibits the list of top bio functions or pathways of the Venn diagram for four different cancer types. Grey cells show the most significant functions/pathways at 5% FDR. (XLSX 18 kb)
DOI: 10.5281/zenodo.14393338
title: Ranked members - Donat et al. 2024 - Improving the forecast quality of near-term climate projections by constraining internal variability based on decadal predictions and observations

description: Reference journal article:

Donat, M. G., Mahmood, R., Cos, P., Ortega, P., & Doblas-Reyes, F. (2024). Improving the forecast quality of near-term climate projections by constraining internal variability based on decadal predictions and observations. Environmental Research: Climate, 3(3), 035013. https://doi.org/10.1088/2752-5295/AD5463

 

Example of code to read the YAML files:

#######################################
################## R ##################
#######################################

# install.packages("yaml")
library(yaml)
file <- 'RankedMembers_accumyears9_constraintregionGlobal_ensemble209.yaml'
member_list <- yaml.load_file(file)
print(member_list[['s1970']][1:30])  # to get the best 30 members for the start date 1970

#######################################
################ Python ###############
#######################################

# pip install pyyaml
import yaml
file = 'RankedMembers_accumyears9_constraintregionGlobal_ensemble209.yaml'
with open(file, "r") as f:
  member_list = yaml.safe_load(f)
print(member_list['s1970'][0:30]) # to get the best 30 members for the start date 1970
DOI: 10.5281/zenodo.14393337
title: Ranked members - Donat et al. 2024 - Improving the forecast quality of near-term climate projections by constraining internal variability based on decadal predictions and observations

description: Reference journal article:

Donat, M. G., Mahmood, R., Cos, P., Ortega, P., & Doblas-Reyes, F. (2024). Improving the forecast quality of near-term climate projections by constraining internal variability based on decadal predictions and observations. Environmental Research: Climate, 3(3), 035013. https://doi.org/10.1088/2752-5295/AD5463

 

Example of code to read the YAML files:

#######################################
################## R ##################
#######################################

# install.packages("yaml")
library(yaml)
file <- 'RankedMembers_accumyears9_constraintregionGlobal_ensemble209.yaml'
member_list <- yaml.load_file(file)
print(member_list[['s1970']][1:30])  # to get the best 30 members for the start date 1970

#######################################
################ Python ###############
#######################################

# pip install pyyaml
import yaml
file = 'RankedMembers_accumyears9_constraintregionGlobal_ensemble209.yaml'
with open(file, "r") as f:
  member_list = yaml.safe_load(f)
print(member_list['s1970'][0:30]) # to get the best 30 members for the start date 1970
DOI: 10.6084/m9.figshare.c.3614549_d2
title: Additional file 5: of Genetic dissection of the fatty liver QTL Fl1sa by using congenic mice and identification of candidate genes in the liver and epididymal fat

description: Allelle variants on chromosome 12 (Centromere-46.75Â Mb) in SM/J strain versus C57BL/6 strain. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3614549_d3
title: Additional file 4: of Genetic dissection of the fatty liver QTL Fl1sa by using congenic mice and identification of candidate genes in the liver and epididymal fat

description: Allelle variants on chromosome 12 (Centromere-46.75Â Mb) in A/J strain versus C57BL/6 strain. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3614585_d2
title: Additional file 1: of Investigating the pertussis resurgence in England and Wales, and options for future control

description: Pertussis notification data and pertussis vaccination coverage between 1954 and 2013 in England and Wales in an EXCEL file. (XLSX 12 kb)
DOI: 10.15468/dl.jsxhqx
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-5.70341 36.06573,-5.69762 36.06621,-5.69477 36.06788,-5.69866 36.06866,-5.70341 36.06573))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 57 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033165-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4228/zalf.1995.114
title: Weather Data 1995, Muencheberg, Germany

description: The automatic weather station Müncheberg was installed in 1991 by the Leibniz-Centre for Agricultural Landscape Research (ZALF) e.V. and is managed by the Institute of Landscape System Analysis. The station is located within the municipality Müncheberg, district Märkisch-Oderland, state Brandenburg, Germany. Altitude in meter: 62 NN, Geographic latitude: 52,517681 N, Geographic longitude: 14,123200 E,Type: FMA 86. In 2001, the station was replaced by a new system of the same type. In 1995, data have been collected for: leaf wetness (%); soil temperatur in 20cm depth (°C); soil temperatur in 5cm depth (°C); soil temperatur in 50cm depth (°C); global radiation (J/cm²); relative humidity (%); air temperature, 20cm above ground (°C); air temperature, 2m above ground (°C); precipitation (mm); wind velocity (m/s); evaporation (mm)
DOI: 10.6084/m9.figshare.c.3614690_d1
title: Additional file 4: Table S4. of Transcriptomic profiling of Melon necrotic spot virus-infected melon plants revealed virus strain and plant cultivar-specific alterations

description: Gene Ontology terms (GO terms) of the different clusters obtained in Planters Jumbo cotyledons. Significant GO terms from the different clusters obtained according to the differentially expressed gene pattern in Planters Jumbo cotyledons infected with MNSV-Mα5/3’264 in comparison to Tendral cotyledons infected with the same virus. % enrichment means the representation of the GO term in relation to the complete array. Genes belonging to each cluster are listed in contiguous spread sheets. A selection of genes from cluster 2 that had expression levels above 10 times as compared to their control (FC ≥ 10) is also listed in contiguous spreadsheets. (XLSX 263 kb)
DOI: 10.6084/m9.figshare.c.3614690_d2
title: Additional file 2: Table S2. of Transcriptomic profiling of Melon necrotic spot virus-infected melon plants revealed virus strain and plant cultivar-specific alterations

description: Gene Ontology terms (GO terms) of the different clusters obtained in Tendral cotyledons. Significant GO terms from the different clusters obtained according to the differentially expressed gene pattern in Tendral cotyledons infected with MNSV-Mα5 and MNSV-Mα5/3’264. % enrichment means the representation of the GO term in relation to the complete array. Genes belonging to each cluster are listed in contiguous spread sheets. A selection of genes from clusters 2 and 11 that had expression levels above 10 times as compared to their control (FC ≥ 10) is also listed. (XLSX 347 kb)
DOI: 10.15468/dl.a5jvyt
title: Occurrence Download

description: A dataset containing 8297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-9.07639 42.50427,-8.96922 42.50427,-8.96922 42.54712,-9.07639 42.54712,-9.07639 42.50427))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 8297 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033166-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3614690_d3
title: Additional file 5: Table S5. of Transcriptomic profiling of Melon necrotic spot virus-infected melon plants revealed virus strain and plant cultivar-specific alterations

description: List of differentially expressed genes by MNSV, CMV and WMV in Tendral cotyledons at 3dpi. The significant GO terms among each list of differential-expressed genes are also listed in different Excel spread sheets. (XLSX 212 kb)
DOI: 10.6084/m9.figshare.c.3614804_d5
title: Additional file 2: Table S1. of High-density P300 enhancers control cell state transitions

description: Publicly available datasets used to curate SE catalogs.(XLSX 51Â kb)
DOI: 10.6084/m9.figshare.c.3614804_d6
title: Additional file 3: Table S2. of High-density P300 enhancers control cell state transitions

description: A summary of datasets used in this study.(XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3614804_d7
title: Additional file 5: Table S3. of High-density P300 enhancers control cell state transitions

description: Cell-specific SE-associated genes in T helper cells.(XLSX 74Â kb)
DOI: 10.6084/m9.figshare.c.3614843_d1
title: Additional file 1: of Graph mining for next generation sequencing: leveraging the assembly graph for biological insights

description: Taxonomic read assignments. This file is a spreadsheet that contains the raw read counts assigned to the genera present in Human Microbiome Reference Genomes. (XLSX 230 kb)
DOI: 10.6084/m9.figshare.c.3614846_d5
title: Additional file 6: Table S6. of The transcriptome of Candida albicans mitochondria and the evolution of organellar transcription units in yeasts

description: Mitochondrial genome sequences used in the evolutionary comparisons. Genome size, accession numbers, number of introns, and references are provided. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3614867_d1
title: Additional file 1: of Can ventilator settings reduce the negative effects of endotracheal suctioning? Investigations in a mechanical lung model

description: RR (Ventilator frequency), Vti (insp.tidal volume), Vte (exp. tidal volume), MVe (minute ventilaton), Pinsp (= PPEAK ventilator), Pmean (= PMEAN ventilator), Ventilator PEEP (= PEEP ventilator), Distal transducer Pinsp (= PPEAK model airways), Distal transducer PEEP (= PEEP model airways). Data are presented for each of the permutations listed in the methods section; before scope/catheter insertion (30 sec), after insertion (30 sec), during suctioning (30 sec) and after removal of the device (30 sec). Calculations are also listed in separate columns. (XLSX 522 kb)