cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/at4r4n
title: A revised taxonomy of Asian snail-eating snakes Pareas (Squamata, Pareidae): evidence from morphological comparison and molecular phylogeny

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wang, Ping, Che, Jing, Liu, Qin, Li, Ke, Jin, Jie Qiong, Jiang, Ke, Shi, Lei, Guo, Peng (2020): A revised taxonomy of Asian snail-eating snakes Pareas (Squamata, Pareidae): evidence from morphological comparison and molecular phylogeny. ZooKeys 939: 45-64, DOI: http://dx.doi.org/10.3897/zookeys.939.49309, URL: http://dx.doi.org/10.3897/zookeys.939.49309
DOI: 10.15468/gq5jxe
title: Notes on Macroteleia Westwood (Hymenoptera, Scelionidae) from China, with description of a new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Hong, Chun-Dan, Popovici, Ovidiu Alin, Chen, Hua-Yan (2020): Notes on Macroteleia Westwood (Hymenoptera, Scelionidae) from China, with description of a new species. ZooKeys 939: 29-43, DOI: http://dx.doi.org/10.3897/zookeys.939.51272, URL: http://dx.doi.org/10.3897/zookeys.939.51272
DOI: 10.15468/jd3kfz
title: Lectotypification of Abies fanjingshanensis (Pinaceae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Yang, Yong, Rushforth, Keith (2020): Lectotypification of Abies fanjingshanensis (Pinaceae). PhytoKeys 152: 105-110, DOI: http://dx.doi.org/10.3897/phytokeys.152.51494, URL: http://dx.doi.org/10.3897/phytokeys.152.51494
DOI: 10.15468/km2tpq
title: Taxonomy and phylogeny of Sidera (Hymenochaetales, Basidiomycota): four new species and keys to species of the genus

description: This dataset contains the digitized treatments in Plazi based on the original journal article Du, Rui, Wu, Fang, Gate, Genevieve M., Dai, Yu-Cheng, Tian, Xue-Mei (2020): Taxonomy and phylogeny of Sidera (Hymenochaetales, Basidiomycota): four new species and keys to species of the genus. MycoKeys 68: 115-135, DOI: http://dx.doi.org/10.3897/mycokeys.68.53561, URL: http://dx.doi.org/10.3897/mycokeys.68.53561
DOI: 10.15468/n3sjb5
title: Immature stages of Palearctic Mecinus species (Coleoptera, Curculionidae, Curculioninae): morphological characters diagnostic at genus and species levels

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gosik, Rafal, Skuhrovec, Jiri, Caldara, Roberto, Tosevski, Ivo (2020): Immature stages of Palearctic Mecinus species (Coleoptera, Curculionidae, Curculioninae): morphological characters diagnostic at genus and species levels. ZooKeys 939: 87-165, DOI: http://dx.doi.org/10.3897/zookeys.939.50612, URL: http://dx.doi.org/10.3897/zookeys.939.50612
DOI: 10.15468/nk72kb
title: Walaphyllium subgen. nov., the dancing leaf insects from Australia and Papua New Guinea with description of a new species (Phasmatodea, Phylliidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Cumming, Royce T., Thurman, Jessa H., Youngdale, Sam, Tirant, Stephane Le (2020): Walaphyllium subgen. nov., the dancing leaf insects from Australia and Papua New Guinea with description of a new species (Phasmatodea, Phylliidae). ZooKeys 939: 1-28, DOI: http://dx.doi.org/10.3897/zookeys.939.52071, URL: http://dx.doi.org/10.3897/zookeys.939.52071
DOI: 10.15468/yydev9
title: Taxonomic revision and phylogenetic position of the flying squirrel genus Biswamoyopterus (Mammalia, Rodentia, Sciuridae, Pteromyini) on the northern Indo-China peninsula

description: This dataset contains the digitized treatments in Plazi based on the original journal article Li, Guogang, Lwin, Ye Htet, Yang, Bin, Qin, Tao, Phothisath, Phouthong, Maung, Kyaw-Win, Quan, Rui-Chang, Li, Song (2020): Taxonomic revision and phylogenetic position of the flying squirrel genus Biswamoyopterus (Mammalia, Rodentia, Sciuridae, Pteromyini) on the northern Indo-China peninsula. ZooKeys 939: 65-85, DOI: http://dx.doi.org/10.3897/zookeys.939.31764, URL: http://dx.doi.org/10.3897/zookeys.939.31764
DOI: 10.24431/rw1k45r
title: Genetic data of Golden King Crab, Aleutian Islands, 1994-2017

description: Data in this study is based on analyses of 22 samples from the Aleutian Archipelago and southeastern Alaska collected from 1994 to 2017. Microsatellite and mitochondrial (mt) DNA data samples were collected during commercial pot harvests, research cruises, and at harvest landing locations to support a study of genetic variability among populations. Archived samples (1994-1996) consisted of muscle tissue and later samples (2011-2017) consisted of hemolymph. We used molecular markers to resolve the genetic stock structure of Golden King Crab (GKC), which were used to help define population production units across Gulf of Alaska. Data in the file: 1526-GKC-Sample locations.csv lists the names of sample locations, dates of collection and latitude-longitude coordinates. Small samples were pooled by area to provide statistical power to detect microsatellite allele-frequency and mtDNA-haplotype frequency differences on spatial scales of about 100 kilometers. The data file: 1526-GKC-microsatellite genotypes.txt contains genotypes for 14 microsatellite loci in GENEPOP format. These data are summarized in two files: 1) 1626-GCK-microsatellite allelic counts by sample.csv: contains allelic counts for the 14 microsatellite loci in the 22 samples, 2) 1526-GKC-microsatellite number of alleles.csv: contains the number of alleles by sample and locus. Mitochondrial DNA Sanger sequences are listed in two files; 1) 1526-GKC-mtDNA-COI-sequences.fas which contains sequences for mtDNA cytochrome oxidase I (N = 734) in standard Fasta format and 2) 1526-GKC-mtDNA-ND5-sequences.fas contains sequences for mtDNA NADH dehydrogenase subunit 5 (N = 717) also in standard Fasta format. These data were examined with standard genetic statistics to test for genetic differences between populations and to describe the distribution of gene diversity among populations.
DOI: 10.6073/pasta/3e6ddb8d02be4314c0d040df852e4703
title: Alaskan Peatland Experiment (APEX): Ammonium Uptake Experiment II - Size Characteristics of Carex aquatilis Plants Harvested in 2016 from Thermokast Features Located in the Bonanza Creek Experimental Forest near Fairbanks, Alaska

description: This dataset contains data from an ammonium uptake experiment conducted at the APEX Beta site in the BCEF. Data includes size characteristics of Carex aquatilis plants harvested from the edge and centre of thermokarst features.
DOI: 10.6073/pasta/b9f9198e33483df8d58912e3e75cea27
title: Giant Kelp Microbiome Altered in the Presence of Epiphytes

description: This data package includes data tables documenting microbial community on kelp blades as well as surrounding water column, and R script that analyzes diversity of the microbiomes in kelp forests. Samples were collected using stand up paddle boards at two kelp beds in the Santa Barbara Channel: Arroyo Quemado (AQ: 34° 28.127′ N, 120° 07.285′ W) and Mohawk Reef (MR; 34° 23.660′ N, 119° 43.800′ W) from May to August, 2018. Seawater samples were also collected as part of this project and to compare kelp microbiomes to microbial communities in the surrounding water column. The raw sequencing reads were archived in the Sequence Read Archive data repository through NCBI (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA612503) This work was conducted by AK James, CJ English, N Nidzieko, CA Carlson, and EG Wilbanks. This data package is a mirror of a GitHub project: https://github.com/ajamesk10/KELP_SBC_16S_2018
DOI: 10.6073/pasta/f91edcd2552aad2c5c3dad6454bb2f07
title: Alaskan Peatland Experiment (APEX): Ammonium Uptake Experiment I - Uptake Data Collected in 2016 at Lowland Bog Sites in the Bonanza Creek Experimental Forest near Fairbanks, Alaska

description: This dataset contains data from an ammonium uptake experiment conducted at the APEX Beta site in the BCEF. Data includes ammonium uptake of Carex aquatilis roots from porewater spiked with (NH4)2SO4 for 4 and 8 hours after excavation from thermokarst bogs. Comparisons involve deep vs shallow roots and roots excavated from the edge and centre of thermokarst bogs.
DOI: 10.15468/a5rmzq
title: Synopsis of the carpenter bee subgenus Xylocopa (Schonnherria) Lepeletier, 1841 (Hymenoptera: Apidae) in Colombia, with designation of lectotypes and the description of two new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Villamizar, Germ?n, Fern?ndez, Fernando, Vivallo, Felipe (2020): Synopsis of the carpenter bee subgenus Xylocopa (Schonnherria) Lepeletier, 1841 (Hymenoptera: Apidae) in Colombia, with designation of lectotypes and the description of two new species. Zootaxa 4789 (2): 301-347, DOI: https://doi.org/10.11646/zootaxa.4789.2.1
DOI: 10.15468/c6s9yc
title: The concluding chapter: recircumscription of Goodenia (Goodeniaceae) to include four allied genera with an updated infrageneric classification

description: This dataset contains the digitized treatments in Plazi based on the original journal article Shepherd, Kelly A., Lepschi, Brendan J., Johnson, Eden A., Gardner, Andrew G., Sessa, Emily B., Jabaily, Rachel S. (2020): The concluding chapter: recircumscription of Goodenia (Goodeniaceae) to include four allied genera with an updated infrageneric classification. PhytoKeys 152: 27-104, DOI: http://dx.doi.org/10.3897/phytokeys.152.49604, URL: http://dx.doi.org/10.3897/phytokeys.152.49604
DOI: 10.15468/qa9rrq
title: Primulina hochiensis var. ochroleuca (Gesneriaceae), a new variety from a limestone area of Guangxi, China, and errata on five new species of Primulina

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ge, Yu-Zhen, Xin, Zi-Bing, Fu, Long-Fei, Chou, Wei-Chuen, Huang, Yi, Huang, Zhang-Jie, Maciejewski, Stephen, Wen, Fang (2020): Primulina hochiensis var. ochroleuca (Gesneriaceae), a new variety from a limestone area of Guangxi, China, and errata on five new species of Primulina. PhytoKeys 152: 111-120, DOI: http://dx.doi.org/10.3897/phytokeys.152.50968, URL: http://dx.doi.org/10.3897/phytokeys.152.50968
DOI: 10.15468/qcegbm
title: Splitting the Pisonia birdcatcher trees: re-establishment of Ceodes and Rockia (Nyctaginaceae, Pisonieae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Rossetto, Elson Felipe Sandoli, Caraballo-Ortiz, Marcos A. (2020): Splitting the Pisonia birdcatcher trees: re-establishment of Ceodes and Rockia (Nyctaginaceae, Pisonieae). PhytoKeys 152: 121-136, DOI: http://dx.doi.org/10.3897/phytokeys.152.50611, URL: http://dx.doi.org/10.3897/phytokeys.152.50611
DOI: 10.6073/pasta/2e4a9eddbc6998679502d0a1696be346
title: Soil Inorganic Nitrogen on the Main Cropping System Experiment at the Kellogg Biological Station, Hickory Corners, MI (1989 to 2018)

description: Dataset Abstract Measurement of soil inorganic nitrogen began in 1989 for all treatments on the LTER Main Site and 1993 on the Successional and Forest sites. Ammonium and nitrate are analyzed twice monthly or monthly during the growing season on baseline soil samplings. Additional datasets from the Baseline Soil Samplings include soil moisture, total N and total C. original data source http://lter.kbs.msu.edu/datasets/24
DOI: 10.6073/pasta/85c852cf202609a4391f34c4384f8f68
title: Eight Mile Lake Research Watershed, Thaw Gradient: Seasonal water table depth from 2004-2019

description: In this larger study, we are asking the question: Is old carbon that comprises the bulk of the soil organic matter pool released in response to thawing of permafrost? We are answering this question by using a combination of field and laboratory experiments to measure radiocarbon isotope ratios in soil organic matter, soil respiration, and dissolved organic carbon, in tundra ecosystems. The objective of these proposed measurements is to develop a mechanistic understanding of the SOM sources contributing to C losses following permafrost thawing. We are making these measurements at an established tundra field site near Healy, Alaska in the foothills of the Alaska Range. Field measurements center on a natural experiment where permafrost has been observed to warm and thaw over the past several decades. This area represents a gradient of sites each with a different degree of change due to permafrost thawing. As such, this area is unique for addressing questions at the time and spatial scales relevant for change in arctic ecosystems.
DOI: 10.6073/pasta/922f98e5134c24fa233f23b8a14e1ac3
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating Research (CiPEHR): Seasonal water table depth data, 2012-2019

description: The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions: 1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C, that comprises the bulk of the soil C pool, influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange? We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. This data includes water table depth measurements collected from winter warming and control treatment plots at CiPEHR for the ice-free period of 2012-2019.
DOI: 10.6073/pasta/d901eaddc06cfdebde8853d8a26d6c64
title: Interagency Ecological Program San Francisco Estuary 20mm Survey 1995 – 2019

description: The Interagency Ecological Program San Francisco Estuary 20-mm Survey was initiated by the California Department of Fish and Wildlife (CDFW) in 1995 to monitor the distribution and abundance of post-larval and juvenile Delta Smelt (Hypomesus transpacificus). Delta Smelt are considered to be an annual fish endemic to the upper San Francisco Estuary that spawn in early spring and rear through the summer and fall in fresh to brackish water. Young of the Year (YOY) Delta Smelt are considered juveniles at sizes greater than or equal to 20-mm, and this survey targets those Delta Smelt. The 20-mm Survey currently samples 47 stations at fixed locations from San Pablo Bay through Suisun Bay and into the Sacramento-San Joaquin River Delta every other week from March to July. During high outflow years, 5 additional stations are sampled in San Pablo Bay to provide greater spatial coverage of potential Delta Smelt habitat. The survey has historically sampled between 41 and 55 stations. At each station, three 10-minute stepped oblique tows are conducted for fish. Each stepped oblique tow follows a tow schedule to sample the entire water column, and the volume of water sampled is estimated using a General Oceanics flowmeter. The net is a cone shaped plankton net composed of 1600μm mesh and measuring 5.5 meters in length with a mouth area of 1.51m2 lashed onto a rigid D-frame with skis. Post-larval and juvenile fish samples are preserved in the field in 10% Formalin dyed with Rose Bengal and brought back to the CDFW Stockton Lab for identification to species and enumeration under a microscope. At each station, environmental and water quality data are also collected, and include: top temperature, top and bottom electrical conductivity (normalized at 25degreeC), water clarity, and tidal condition.
DOI: 10.6073/pasta/e790941c0052e4eb1053536c81a6cd40
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating and Drying Research (DryPEHR): Seasonal water table depth data, 2011-2019

description: This drying and warming experiment addresses the following questions: 1) Does ecosystem drying, warming and permafrost thaw cause a net release or uptake of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C that comprises the bulk of the soil C pool influence ecosystem C loss? 3) How do drying and warming affect plant communities and ecosystem properties? We are answering these questions using a combined warming and drying experiment (DryPEHR), which is situated with the Carbon in Permafrost Experimental Heating Research (CiPEHR) project and located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. Warming treatment here refers to growing season air temperature warming (~1C) using open top chambers (OTC) combined with soil 'warming' using snow fences during the snow covered months. Drying is achieved using an automated pumping system that lowers the water table in the dry plots. Soil warming began in 2008; OTCs and drying in 2011. This data includes water table depth measurements collected from the drying experiment (dry and control) at DryPEHR and winter warming and control treatment plots at CiPEHR for the ice-free period of 2011-2019.
DOI: 10.15468/vb3egj
title: Hygrophorus subsection Hygrophorus (Hygrophoraceae, Agaricales) in China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wang, Chao-Qun, Li, Tai-Hui, Zhang, Ming, He, Xiao-Lan, Qin, Wei-Qiang, Liu, Tie-Zhi, Zeng, Nian-Kai, Wang, Xiang-Hua, Liu, Jian-Wei, Wei, Tie-Zheng, Xu, Jiang, Li, Yue-Qiu, Shen, Ya-Heng (2020): Hygrophorus subsection Hygrophorus (Hygrophoraceae, Agaricales) in China. MycoKeys 68: 49-73, DOI: http://dx.doi.org/10.3897/mycokeys.68.53264, URL: http://dx.doi.org/10.3897/mycokeys.68.53264
DOI: 10.15468/w38ndd
title: Pseudonannolene canastra sp. nov. (Diplopoda, Spirostreptida) - a new troglobitic millipede from the southwestern state of Minas Gerais, Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gallo, Jessica Scaglione, Bichuette, Maria Elina (2020): Pseudonannolene canastra sp. nov. (Diplopoda, Spirostreptida) - a new troglobitic millipede from the southwestern state of Minas Gerais, Brazil. Subterranean Biology 35: 33-47, DOI: http://dx.doi.org/10.3897/subtbiol.35.51183, URL: http://dx.doi.org/10.3897/subtbiol.35.51183
DOI: 10.15468/wejbsr
title: A new species of Dugesia (Platyhelminthes, Tricladida, Dugesiidae) from China, with an account on the histochemical structure of its major nervous system

description: This dataset contains the digitized treatments in Plazi based on the original journal article Song, Xiao-Yu, Li, Wei-Xuan, Sluys, Ronald, Huang, Shu-Xin, Li, Shuang-Fei, Wang, An-Tai (2020): A new species of Dugesia (Platyhelminthes, Tricladida, Dugesiidae) from China, with an account on the histochemical structure of its major nervous system. Zoosystematics and Evolution 96 (2): 431-447, DOI: http://dx.doi.org/10.3897/zse.96.52484, URL: http://dx.doi.org/10.3897/zse.96.52484
DOI: 10.15784/601337
title: WAIS Divide Ice Core Marine Isotope Stage 3 CO2 record

description: CO2 concentrations in trapped air from the WAIS Divide ice core for Marine Isotope Stage 3 (age range for data 23-67 ka). Methods described in Marcott et al. (2014; Nature, 515, 616-619) and Ahn et al. (2009; Journal of Glaciology, 55, 499-506).
DOI: 10.24431/rw1k45s
title: Adapting to Environmental Change: Shifts in Values, Beliefs and Practices in Three Aleutian Island Communities, 2015-2016

description: This study seeks to understand the ecological and sociocultural changes impacting small Aleutian subsistence communities, how community residents are adapting their perceptions and practices to these changes, and how the communities themselves and institutions can better assess and improve personal and community viability with knowledge of these adaptations. This ethnographic research project in the communities of Akutan, Nikolski and Atka will: 1) document and compare resident’s perceptions, values and use of the local environment and compare observations with instrumented measurements of climate and resource abundance, 2) document current subsistence harvesting and processing practices, 3) determine the most important ecological, economic, and socio-cultural factors associated with observed changes in the use and relationship people have with the environment, 4) analyze the role of institutions in the observed changes in resource availability and environment change, perceived value, and use of subsistence resources, and 5) develop a model which illustrates the interrelations between subsistence use, resource availability, climactic and environmental change, socio-cultural and economic change, and institutional action. Drawing on the long-term research experience that the Principle Investigators have in rural Alaska communities, this project will allow for the opportunity to explore how residents perceive, experience and value their environment and how they have adapted these aspects as well as their subsistence practices to account for environmental change. This mixed-methods study combines semi-structured, in-depth interviews, detailed current and historical mapping of subsistence use areas, participant observation of subsistence practices, a review of literature, and collection and post-processing of relevant instrument data for the scope of this project. The results of the study will lend insight into how residents of small rural communities in the Aleutians interact with their changing environment, as well as how other communities may be experiencing and adapting to changing environments across the state.
DOI: 10.24431/rw1k45t
title: Connectivity of Prince William Sound Pacific cod (Gadus macrocephalus) populations, 2013-2016

description: This project used passive acoustic telemetry tracking methods to quantify Pacific cod (Gadus macrocephalus) movements from Prince William Sound to the Gulf of Alaska during December 2013 – May 2016. Additionally, this project examined spawning site fidelity, residency, and seasonal behavior of cod within Prince William Sound. Acoustic receiver arrays were deployed and a total of 123 cod were acoustic-tagged at Lower Herring and West Twin bays, both located in western Prince William Sound. At Port Gravina in northeast Prince William Sound, 3 cod were tagged as part of a pilot project in April 2013 that utilized both temporary (April-May 2013) and permanent receiver arrays deployed as part of other projects. Receiver arrays located at the boundary of the Gulf of Alaska/Prince William Sound and owned by the Ocean Tracking Network were used to determine if fish were moving into the Gulf of Alaska. Data included with this final report consist of 13 files: a) Pacific cod tagging log (.xlsx); b) (acoustic) Receiver locations (.xlsx); and, c) 11 files with acoustic tagged cod detections (.csv). Note that multiple csv files were required because of the amount of detections (&gt;10 million detections). The Pacific cod tagging log details the catch methods (pot or longline), date of capture, and locations of cod captured during this study along with biological information (sex, length, mass), tag series and serial number information, and release locations. Data for receiver locations includes the location, dates, and depths of deployments. There is additional information including receiver and acoustic release serial numbers, along with whether or not a receiver was downloaded or recovered. The cod detections data were read from the receivers into VUE (VEMCO proprietary software) then exported into an access database, queried, and exported again into .csv files. These files were screened for false detections, and tagging and handling-related mortalities, and then compiled into the current .csv files included in this submission. This dataset was generated under NPRB project 1306.