cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13332735
title: Input data and R code to generate area of habitat (AOH) for inland wetland species

description: This pipeline reproduces the analysis of Ridley et al. (2025). Cons Bio

Please cite this work as: 

Ridley, F.A., Sayer, C.A., Mair, L., Baisero, D., Böhm, M., Brooks, T.M., Butchart, S.H., Clausnitzer, V., Freyhof, J., Grill, G. and Harrison, I., 2025. Mapping area of habitat for inland wetland species. Conservation Biology, p.e70163.

 

Data and Rscripts to accompany the submission of the manuscript titled 'Mapping Area of Habitat (AOH) for inland wetland species' for publication.

Abstract:

1.           Area of Habitat (AOH) maps enable a high resolution representation of the habitat available within a species’ range, and can support various conservation policy and planning processes. However, until recently, there was insufficient knowledge on the distribution of inland wetland habitats and freshwater biodiversity to develop AOH mapping methods specifically tailored to inland wetland habitats.

2.           We used a combined empirical and thematic approach to translate inland wetland habitat classes in the IUCN Habitats Classification Scheme into spatially explicit wetland cover using the Global Lakes and Wetlands Database (GLWD) version 2 and the World Karst Aquifer Map (WOKAM). AOH was subsequently estimated as the area within the mapped range that corresponded to each species’ habitat and elevation associations. The method was developed and tested using IUCN Red List assessment data, range maps and point locality data for four taxonomic groups: 22,876 species of fishes, odonates, decapod crustaceans and molluscs.

3.           The method performed well in comparison to similar methods already developed for terrestrial mammals, birds, amphibians, and reptiles. The mean map prevalence (proportion of area within a species’ range that was AOH) was between 18% and 32% for each taxonomic group. Using data on known localities of occurrence, between 78% and 100% of species per taxonomic group had a higher classification accuracy than expected if AOH were distributed within the range at random. This represents an increased accuracy in our understanding of wetland species’ distributions.

4.      This study represents the first attempt to distinguish between inland wetland habitat sub-classes, and to include subterranean habitats in an AOH mapping method. Our method will facilitate the inclusion of previously under-represented taxa in key conservation tools and analyses, and is expected to increase the accuracy of AOH mapping for any species associated with inland wetland habitats.
DOI: 10.5281/zenodo.13332736
title: Input data and R code to generate area of habitat (AOH) for inland wetland species

description: This pipeline reproduces the analysis of Ridley et al. (2025). Cons Bio

Please cite this work as: 

Ridley, F.A., Sayer, C.A., Mair, L., Baisero, D., Böhm, M., Brooks, T.M., Butchart, S.H., Clausnitzer, V., Freyhof, J., Grill, G. and Harrison, I., 2025. Mapping area of habitat for inland wetland species. Conservation Biology, p.e70163.

 

Data and Rscripts to accompany the submission of the manuscript titled 'Mapping Area of Habitat (AOH) for inland wetland species' for publication.

Abstract:

1.           Area of Habitat (AOH) maps enable a high resolution representation of the habitat available within a species’ range, and can support various conservation policy and planning processes. However, until recently, there was insufficient knowledge on the distribution of inland wetland habitats and freshwater biodiversity to develop AOH mapping methods specifically tailored to inland wetland habitats.

2.           We used a combined empirical and thematic approach to translate inland wetland habitat classes in the IUCN Habitats Classification Scheme into spatially explicit wetland cover using the Global Lakes and Wetlands Database (GLWD) version 2 and the World Karst Aquifer Map (WOKAM). AOH was subsequently estimated as the area within the mapped range that corresponded to each species’ habitat and elevation associations. The method was developed and tested using IUCN Red List assessment data, range maps and point locality data for four taxonomic groups: 22,876 species of fishes, odonates, decapod crustaceans and molluscs.

3.           The method performed well in comparison to similar methods already developed for terrestrial mammals, birds, amphibians, and reptiles. The mean map prevalence (proportion of area within a species’ range that was AOH) was between 18% and 32% for each taxonomic group. Using data on known localities of occurrence, between 78% and 100% of species per taxonomic group had a higher classification accuracy than expected if AOH were distributed within the range at random. This represents an increased accuracy in our understanding of wetland species’ distributions.

4.      This study represents the first attempt to distinguish between inland wetland habitat sub-classes, and to include subterranean habitats in an AOH mapping method. Our method will facilitate the inclusion of previously under-represented taxa in key conservation tools and analyses, and is expected to increase the accuracy of AOH mapping for any species associated with inland wetland habitats.
DOI: 10.3535/06s-qtm-try
title: Agrostis capillaris L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06t-fyl-57a
title: Juncus bulbosus L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06t-k3l-8qr
title: Carex loliacea L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06t-kd2-wyc
title: Trifolium montanum L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06t-q4g-ysn
title: Dactylorhiza incarnata subsp. incarnata

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06t-snv-nh9
title: Cerastium fontanum subsp. fontanum

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06t-xx2-pp3
title: Carex bohemica Schreb.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06v-08g-7s2
title: Erodium cicutarium (L.) L'Hér.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06v-41w-9a5
title: Atriplex patula L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06v-g34-qz7
title: Salix repens var. ssp. repens var. repens

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06v-hjq-y6a
title: Rumex acetosella subsp. acetosella

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06v-hy6-jn5
title: Trifolium arvense L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06v-k4w-rgv
title: Anthoxanthum australe (Schrad.) Veldkamp

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06v-pf5-5hb
title: Rosa L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06v-qfn-k55
title: Salix phylicifolia L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06v-vyd-5tn
title: Carex vaginata Tausch

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06w-9ac-93q
title: Leymus arenarius (L.) Hochst.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06w-9sx-aap
title: Sisymbrium altissimum L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06w-axd-vsj
title: Gagea minima (L.) Ker Gawl.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06w-gkh-2a6
title: Carex L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06w-z35-2lz
title: Lepidium ruderale L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06x-3pa-fyj
title: Sparganium emersum Rehmann

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06x-55n-kzw
title: Poa trivialis L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06x-7xe-q58
title: Ranunculus flammula L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06x-c5x-seh
title: Dryopteris cristata (L.) A. Gray

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06x-csj-4jm
title: Potamogeton praelongus Wulfen

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06x-gh1-yr6
title: Silene L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06x-jea-2cq
title: Woodsia ilvensis (L.) R. Br.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06x-lgr-kv8
title: Alchemilla monticola Opiz

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06x-pgs-p0f
title: Luzula multiflora subsp. frigida (Buchenau) V. I. Krecz.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06x-pna-vdw
title: Eriophorum gracile Roth

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06x-tjt-4jk
title: Plantae

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06x-vl1-mts
title: Rabelera holostea (L.) M. T. Sharples & E. A. Tripp

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06x-vms-sm5
title: Carex brunnescens subsp. brunnescens

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06x-yj0-xwn
title: Cerastium arvense L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/06y-6qj-xfr
title: Alchemilla hirsuticaulis H. Lindb.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15468/dl.acqxt2
title: Occurrence Download

description: A dataset containing 8477 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (ARG, CHL, PRY, URY, FLK, BRA.21_1, BRA.16_1, BRA.24_1)",
 "TaxonKey is Rhamnaceae"
 ]
}

 The dataset includes 8477 records from 170 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060672-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nvmkms
title: Occurrence Download

description: A dataset containing 939 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Chinese Taipei",
 "HasCoordinate is true",
 "TaxonKey is Trimeresurus stejnegeri Schmidt, 1925",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 939 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007552-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7g79yd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calceolaria corymbosa Ruiz & Pav.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0193013-220831081235567/datasets/export for details.
DOI: 10.15468/dl.jvhf4t
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tetradenia riparia (Hochst.) Codd",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0193014-220831081235567/datasets/export for details.
DOI: 10.15468/dl.a2q6nh
title: Occurrence Download

description: A dataset containing 35226 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Trogon rufus",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 35226 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087824-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ak1cqj
title: Occurrence Download

description: A dataset containing 428 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Ecología y biología de la conservación de la guacamaya escarlata (Ara macao) en la selva Lancandona, Chiapas, México"
 ]
}

 The dataset includes 428 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007552-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uvynq3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aquilegia ecalcarata Maxim.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0194141-220831081235567/datasets/export for details.
DOI: 10.15468/dl.pyeksw
title: Occurrence Download

description: A dataset containing 242 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Penstemon eximius D.D.Keck"
 ]
}

 The dataset includes 242 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068628-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jyrevw
title: Occurrence Download

description: A dataset containing 8212 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Anaxyrus boreas (Baird & Girard, 1852)",
 "Year 1979-2020"
 ]
}

 The dataset includes 8212 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051443-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a258pe
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ardisia densilepidotula Merr."
 ]
}

 The dataset includes 81 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120787-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qtqp7c
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is incertae sedis",
 "Year is greater than 2013",
 "Geometry MULTIPOLYGON (((11.191379 42.466449,11.185717 42.468056,11.185983 42.468426,11.185991 42.46865,11.186152 42.468909,11.186175 42.469583,11.186675 42.470847,11.186681 42.471035,11.18706 42.471739,11.187185 42.472411,11.1874 42.472782,11.187787 42.473711,11.188207 42.475613,11.188546 42.476618,11.189302 42.479451,11.189336 42.480424,11.18955 42.480757,11.189584 42.481731,11.189835 42.482382,11.190127 42.4835,11.190147 42.484061,11.19032 42.484695,11.190244 42.485408,11.19058 42.486338,11.190606 42.487087,11.190775 42.487571,11.190688 42.487985,11.190805 42.488432,11.190772 42.48892,11.190854 42.489817,11.19107 42.490225,11.191085 42.490637,11.191084 42.49206,11.191338 42.493554,11.19127 42.494492,11.191226 42.496141,11.190997 42.498281,11.190581 42.499413,11.190846 42.499745,11.191565 42.500031,11.192246 42.500692,11.193074 42.501201,11.193236 42.501497,11.193545 42.501641,11.195115 42.503109,11.195369 42.503142,11.195682 42.503398,11.195593 42.503737,11.196225 42.504437,11.196627 42.504354,11.198309 42.503236,11.201801 42.500849,11.202292 42.500638,11.203474 42.499754,11.20438 42.499306,11.204671 42.4993,11.206926 42.49721,11.208804 42.495451,11.20945 42.494505,11.210182 42.493234,11.21112 42.492318,11.212668 42.490817,11.213327 42.490265,11.214298 42.488918,11.216181 42.486834,11.216311 42.486833,11.218502 42.484349,11.219953 42.482849,11.223396 42.48009,11.224193 42.47932,11.224619 42.479025,11.229769 42.476555,11.228543 42.474784,11.216457 42.466259,11.191379 42.466449)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027857-230530130749713/datasets/export for details.
DOI: 10.15468/dl.wqzxrb
title: Occurrence Download

description: A dataset containing 2361 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Patterns of widespread decline in North American bumble bees",
 {
 "or" : [
 "Month is May",
 "Month is June",
 "Month is July",
 "Month is August"
 ]
 },
 "Year 2000-2001"
 ]
}

 The dataset includes 2361 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069293-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cgxq56
title: Occurrence Download

description: A dataset containing 613 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carpesium glossophyllum Maxim.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 613 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0191257-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ece297
title: Occurrence Download

description: A dataset containing 131 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stigmaphyllon echitoides Triana & Planch."
 ]
}

 The dataset includes 131 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022364-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.twtp34
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Giraffa camelopardalis peralta Thomas, 1898"
 ]
}

 The dataset includes 52 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007553-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jg74nf
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tyrolimnas anthraconesa Meyrick, 1934",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0189100-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.epysep
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Culicidae",
 "Country is Norfolk Island"
 ]
}

 The dataset includes 18 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027872-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qe56br
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Triportheus venezuelensis Malabarba, 2004"
 ]
}

 The dataset includes 109 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069300-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tsepmr
title: Occurrence Download

description: A dataset containing 1536 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rudgea jasminoides (Cham.) Müll.Arg."
 ]
}

 The dataset includes 1536 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0189097-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.739ybp
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nidularium rubens Mez"
 ]
}

 The dataset includes 47 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048039-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6qthgj
title: Occurrence Download

description: A dataset containing 88762 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((118.5 -18.5,120.5 -18.5,120.5 -16.5,118.5 -16.5,118.5 -18.5))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 88762 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0364045-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7n4wy4
title: Occurrence Download

description: A dataset containing 1878 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Taxodium mucronatum Ten."
 ]
}

 The dataset includes 1878 records from 151 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0189092-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.