cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21557784
title: Supplementary Material for: Regulation of FOXO3 on neuronal ferroptosis after intracerebral hemorrhage via modulating NOX4 transcription

description: Introduction: Intracerebral hemorrhage (ICH) is known to trigger neuronal ferroptosis while forkhead box O3 (FOXO3) is implicated in ICH. This study aimed to determine the specific effect of FOXO3 on neuronal ferroptosis after ICH. Methods: The ICH mouse model was established through the injection of bacterial collagenase type IV and the cell model was established in Hemin-induced HT-22 cells. Subsequently, neurological functions, brain water content, and histopathological changes in mice were assessed. HT-22 cell activity was examined via cell counting kit-8 (CCK-8) method, and the levels of FOXO3, NADPH oxidase 4 (NOX4), and glutathione peroxidase 4 (GPX4) in brain tissues and HT-22 cells were measured. Fe2+ concentration and the levels of reactive oxygen species (ROS), malondialdehyde (MDA), and glutathione (GSH) in the tissues and cells were examined. The binding relationship between FOXO3 and the NOX4 promoter region was determined via chromatin-immunoprecipitation (Ch-IP). Rescue experiments were designed to probe the role of NOX4 in the regulation of FOXO3 on neuronal ferroptosis. Results: FOXO3 was highly-expressed in ICH models while silencing FOXO3 alleviated brain damage, edema, and inflammatory infiltration in ICH mice. Meanwhile, silencing FOXO3 enhanced cell activity, diminished ROS and MDA activities and Fe2+ concentration, and elevated GSH and GPX4 levels in the tissues or cells. FOXO3 could bind to the NOX4 promoter and upregulate NOX4 transcription. NOX4 overexpression partially neutralized the repressive role of silencing FOXO3 in neuronal ferroptosis. Conclusion: Silencing FOXO3 attenuated ICH-induced neuronal ferroptosis via down-regulating NOX4 transcription levels, thus ameliorating post-ICH brain damage.
DOI: 10.5281/zenodo.7322863
title: Odessa Papers

description: On May 2, 2014 in Odessa (Ukraine), six people died in riots between Russia-oriented supporters of Ukrainian federation and West-oriented supporters of Ukrainian unity. Some of the participants entered the House of the Trade Unions that later caught fire. Dozens of people died. There are numerous speculations about who set up the fire and why police and firefighters intervened with a delay of about 40 minutes. The events in Odessa have been used by media in different languages to picture Ukrainian people and authorities as nationalists and fascists. The narratives about this event have a strong relation to the geo-political developments in that region, in the decade following it. We collected a dataset of 68 online articles in four languages spoken by authors of this paper at native and near-native level (Russian, English, Polish and German) distributed over eight years (2014-2022). Russian-language sources include publications from Russian, Belorussian and Ukrainian venues. The dataset is useful for research on political bias, political manipulation, propaganda and text summarisation.
DOI: 10.5281/zenodo.7322862
title: Odessa Papers

description: On May 2, 2014 in Odessa (Ukraine), six people died in riots between Russia-oriented supporters of Ukrainian federation and West-oriented supporters of Ukrainian unity. Some of the participants entered the House of the Trade Unions that later caught fire. Dozens of people died. There are numerous speculations about who set up the fire and why police and firefighters intervened with a delay of about 40 minutes. The events in Odessa have been used by media in different languages to picture Ukrainian people and authorities as nationalists and fascists. The narratives about this event have a strong relation to the geo-political developments in that region, in the decade following it. We collected a dataset of 68 online articles in four languages spoken by authors of this paper at native and near-native level (Russian, English, Polish and German) distributed over eight years (2014-2022). Russian-language sources include publications from Russian, Belorussian and Ukrainian venues. The dataset is useful for research on political bias, political manipulation, propaganda and text summarisation.
DOI: 10.5281/zenodo.3549755
title: Feasible Alternatives to Green Growth

description: Climate change and increasing income inequality have emerged as twin threats to contemporary standards of living, peace and democracy. These two problems are usually tackled separately in the policy agenda. A new breed of radical proposals has been advanced to manage a fair low-carbon transition. In this spirit, we develop a dynamic macrosimulation model to investigate the long-run effects of three scenarios: Green Growth, Policies for Social Equity, and Degrowth. The Green Growth scenario, based on technological progress and environmental policies, achieves a significant reduction in greenhouse gas emissions at the cost of increasing income inequality and unemployment. The Policies for Social Equity scenario adds direct labour market interventions that result in an environmental performance similar to Green Growth while improving social conditions at the cost of increasing public deficit. The Degrowth scenario further adds a reduction in consumption and exports and achieves a greater reduction in emissions and inequality with higher public deficit despite the introduction of a wealth tax. This study argues that new radical social policies, although often deemed economically and politically unfeasible, can combine social prosperity and low-carbon emissions.
description: New data version with Vensim model: 10.5281/zenodo.7322875 DOI: https://doi.org/10.1038/s41893-020-0484-y
DOI: 10.5281/zenodo.7322875
title: Feasible Alternatives to Green Growth

description: Climate change and increasing income inequality have emerged as twin threats to contemporary standards of living, peace and democracy. These two problems are usually tackled separately in the policy agenda. A new breed of radical proposals has been advanced to manage a fair low-carbon transition. In this spirit, we develop a dynamic macrosimulation model to investigate the long-run effects of three scenarios: Green Growth, Policies for Social Equity, and Degrowth. The Green Growth scenario, based on technological progress and environmental policies, achieves a significant reduction in greenhouse gas emissions at the cost of increasing income inequality and unemployment. The Policies for Social Equity scenario adds direct labour market interventions that result in an environmental performance similar to Green Growth while improving social conditions at the cost of increasing public deficit. The Degrowth scenario further adds a reduction in consumption and exports and achieves a greater reduction in emissions and inequality with higher public deficit despite the introduction of a wealth tax. This study argues that new radical social policies, although often deemed economically and politically unfeasible, can combine social prosperity and low-carbon emissions.
description: New data version with Vensim model: 10.5281/zenodo.7322875 DOI: https://doi.org/10.1038/s41893-020-0484-y
DOI: 10.6084/m9.figshare.21202457
title: Hilsa_Muscle-transcriptome_Molbio

description: Hilsa Muscle transcriptome assembly.
DOI: 10.6084/m9.figshare.21202457.v1
title: Hilsa_Muscle-transcriptome_Molbio

description: Hilsa Muscle transcriptome assembly.
DOI: 10.6084/m9.figshare.20013392
title: Both age and social environment shape the phenotype of ant workers

description: The aim of this study was to disentangle the effect of caste and age on ant physiology by analysing their metabolome and proteome. For this purpose, we designed an experiment with four groups : young foragers (Y.F), old foragers (O.F), young nest-workers (Y.NW) and old nest-workers (O.NW). <br> We provide raw proteomics and metabolomics data, data after curation (as used for the statistical analyses); part of the statistical analysis and relevant references for the biologocial processes involved. <br> This dataset is associated with a research article :
DOI: 10.6084/m9.figshare.20013392.v3
title: Both age and social environment shape the phenotype of ant workers

description: The aim of this study was to disentangle the effect of caste and age on ant physiology by analysing their metabolome and proteome. For this purpose, we designed an experiment with four groups : young foragers (Y.F), old foragers (O.F), young nest-workers (Y.NW) and old nest-workers (O.NW). <br> We provide raw proteomics and metabolomics data, data after curation (as used for the statistical analyses); part of the statistical analysis and relevant references for the biologocial processes involved. <br> This dataset is associated with a research article :
DOI: 10.34740/kaggle/ds/2545712
title: ROST (ROmanian Stories and other Texts)
DOI: 10.6084/m9.figshare.21555414
title: Organisation, staffing and resources of critical care units in Kenya

description: The csv file contains data on organisational, staffing, resources and service-evaluation features regarding 60 critical care units in Kenya. Organisational variables included number of beds in the unit compared to the hospital beds, unit type (ICU or HDU), ICU status (medical, surgical, COVID unit, etc.), model of care and use of quality related interventions. Staffing variables included nurse to bed ratio during daytime and night time, the availability of ICU physicians, specialities available for consultation, training status of critical care nurses. Resources variables included number of functioning ventilators and high flow nasal cannula machines, type of oxygen supply, availability of imaging and monitoring equipment, availability of point of care laboratory equipment; availability of infusion and syringe pumps, difficult airway trolley, defibrillator apparatus; availability of electronic medical record; visiting hours policy before and after COVID-19 pandemic. The survey also sought to capture existing service evaluation activities in the units, as morbidity and mortality meetings, quality improvement programs, root cause analysis meetings and continuous medical education events. The willingness to participate in a National ICU registry was also assessed.
DOI: 10.6084/m9.figshare.21557835
title: Stata. Malit- Ombati (1).dta

description: 3R project aquaculture production data
DOI: 10.6084/m9.figshare.21557835.v1
title: Stata. Malit- Ombati (1).dta

description: 3R project aquaculture production data
DOI: 10.5281/zenodo.7322850
title: Elevated energy costs of biomass production in mitochondrial-respiration deficient Saccharomyces cerevisiae

description: The <em>pcYeast8</em> model and data, required to reproduce the figures in the preprint "Elevated energy costs of biomass production in mitochondrial-respiration deficient <em>Saccharomyces cerevisiae</em>". Data bundle uploaded by Pranas Grigaitis, p.grigaitis [at] vu.nl. <em>Abstract</em> Microbial growth requires energy for maintaining the existing cells and producing components for the new ones. Microbes therefore invest a considerable amount of their resources into proteins needed for energy harvesting. Growth in different environments is associated with different energy demands for growth of yeast <em>Saccharomyces cerevisiae</em>, although the cross-condition differences remain poorly characterized. Furthermore, a direct comparison of the energy costs for the biosynthesis of the new biomass across conditions is not feasible experimentally; computational models, on the contrary, allow comparing the optimal metabolic strategies and quantify the respective costs of energy and nutrients. Thus in this study, we used a resource allocation model of <em>S. cerevisiae</em> to compare the optimal metabolic strategies between different conditions. We found that <em>S. cerevisiae</em> with respiratory-impaired mitochondria required additional energetic investments for growth, while growth on amino acid-rich media was not affected. Amino acid supplementation in anaerobic conditions also was predicted to rescue the growth reduction in mitochondrial respiratory shuttle-deficient mutants of <em>S. cerevisiae</em>. Collectively, these results point to elevated costs of resolving the redox imbalance caused by <em>de novo</em> biosynthesis of amino acids in mitochondria. To sum up, our study provides an example of how resource allocation modeling can be used to address and suggest explanations to open questions in microbial physiology.
description: PG and BT acknowledge the funding by Marie Skłodowska-Curie Actions ITN "SynCrop" (grant agreement No 764591). We thank SURFsara for the HPC resources through access to the Lisa Compute Cluster.
DOI: 10.5281/zenodo.7322849
title: Elevated energy costs of biomass production in mitochondrial-respiration deficient Saccharomyces cerevisiae

description: The <em>pcYeast8</em> model and data, required to reproduce the figures in the preprint "Elevated energy costs of biomass production in mitochondrial-respiration deficient <em>Saccharomyces cerevisiae</em>". Data bundle uploaded by Pranas Grigaitis, p.grigaitis [at] vu.nl. <em>Abstract</em> Microbial growth requires energy for maintaining the existing cells and producing components for the new ones. Microbes therefore invest a considerable amount of their resources into proteins needed for energy harvesting. Growth in different environments is associated with different energy demands for growth of yeast <em>Saccharomyces cerevisiae</em>, although the cross-condition differences remain poorly characterized. Furthermore, a direct comparison of the energy costs for the biosynthesis of the new biomass across conditions is not feasible experimentally; computational models, on the contrary, allow comparing the optimal metabolic strategies and quantify the respective costs of energy and nutrients. Thus in this study, we used a resource allocation model of <em>S. cerevisiae</em> to compare the optimal metabolic strategies between different conditions. We found that <em>S. cerevisiae</em> with respiratory-impaired mitochondria required additional energetic investments for growth, while growth on amino acid-rich media was not affected. Amino acid supplementation in anaerobic conditions also was predicted to rescue the growth reduction in mitochondrial respiratory shuttle-deficient mutants of <em>S. cerevisiae</em>. Collectively, these results point to elevated costs of resolving the redox imbalance caused by <em>de novo</em> biosynthesis of amino acids in mitochondria. To sum up, our study provides an example of how resource allocation modeling can be used to address and suggest explanations to open questions in microbial physiology.
description: PG and BT acknowledge the funding by Marie Skłodowska-Curie Actions ITN "SynCrop" (grant agreement No 764591). We thank SURFsara for the HPC resources through access to the Lisa Compute Cluster.
DOI: 10.5281/zenodo.7319327
title: Dataset Literature Review Cyberlaw Security-trends

description: merupakan dataset dan literature review tentang hukum cyber dan cyber-security trends
DOI: 10.5281/zenodo.7319326
title: Dataset Literature Review Cyberlaw Security-trends

description: merupakan dataset dan literature review tentang hukum cyber dan cyber-security trends
DOI: 10.5281/zenodo.7320350
title: Dataset Literature Review Cyberlaw Security-trends

description: merupakan dataset dan literature review tentang hukum cyber dan cyber-security trends
DOI: 10.5281/zenodo.7319358
title: Padding Ain't Enough: Assessing the Privacy Guarantees of Encrypted DNS – Web Scans

description: This dataset contains the main data set of our FOCI 2020 paper "Padding Ain’t Enough: Assessing the Privacy Guarantees of Encrypted DNS". https://www.usenix.org/conference/foci20/presentation/bushart You can find the source code for this project on GitHub: https://github.com/jonasbb/padding-aint-enough When using this software or our dataset, please cite our FOCI 20 paper. <pre>@inproceedings {PaddingAintEnough, author = {Jonas Bushart and Christian Rossow}, booktitle = {10th {USENIX} Workshop on Free and Open Communications on the Internet ({FOCI} 20)}, month = aug, publisher = {{USENIX} Association}, title = {Padding Ain{\textquoteright}t Enough: Assessing the Privacy Guarantees of Encrypted {DNS}}, year = {2020}, }</pre>
DOI: 10.5281/zenodo.7319357
title: Padding Ain't Enough: Assessing the Privacy Guarantees of Encrypted DNS – Web Scans

description: This dataset contains the main data set of our FOCI 2020 paper "Padding Ain’t Enough: Assessing the Privacy Guarantees of Encrypted DNS". https://www.usenix.org/conference/foci20/presentation/bushart You can find the source code for this project on GitHub: https://github.com/jonasbb/padding-aint-enough When using this software or our dataset, please cite our FOCI 20 paper. <pre>@inproceedings {PaddingAintEnough, author = {Jonas Bushart and Christian Rossow}, booktitle = {10th {USENIX} Workshop on Free and Open Communications on the Internet ({FOCI} 20)}, month = aug, publisher = {{USENIX} Association}, title = {Padding Ain{\textquoteright}t Enough: Assessing the Privacy Guarantees of Encrypted {DNS}}, year = {2020}, }</pre>
DOI: 10.5281/zenodo.7319364
title: Padding Ain't Enough: Assessing the Privacy Guarantees of Encrypted DNS – Subpage-Agnostic Domain Classification Firefox

description: This dataset contains one part for the "Subpage-Agnostic Domain Classification" section of our FOCI 2020 paper "Padding Ain’t Enough: Assessing the Privacy Guarantees of Encrypted DNS". https://www.usenix.org/conference/foci20/presentation/bushart You can find the source code for this project on GitHub: https://github.com/jonasbb/padding-aint-enough When using this software or our dataset, please cite our FOCI 20 paper. <pre>@inproceedings {PaddingAintEnough, author = {Jonas Bushart and Christian Rossow}, booktitle = {10th {USENIX} Workshop on Free and Open Communications on the Internet ({FOCI} 20)}, month = aug, publisher = {{USENIX} Association}, title = {Padding Ain{\textquoteright}t Enough: Assessing the Privacy Guarantees of Encrypted {DNS}}, year = {2020}, }</pre>
DOI: 10.5281/zenodo.7319363
title: Padding Ain't Enough: Assessing the Privacy Guarantees of Encrypted DNS – Subpage-Agnostic Domain Classification Firefox

description: This dataset contains one part for the "Subpage-Agnostic Domain Classification" section of our FOCI 2020 paper "Padding Ain’t Enough: Assessing the Privacy Guarantees of Encrypted DNS". https://www.usenix.org/conference/foci20/presentation/bushart You can find the source code for this project on GitHub: https://github.com/jonasbb/padding-aint-enough When using this software or our dataset, please cite our FOCI 20 paper. <pre>@inproceedings {PaddingAintEnough, author = {Jonas Bushart and Christian Rossow}, booktitle = {10th {USENIX} Workshop on Free and Open Communications on the Internet ({FOCI} 20)}, month = aug, publisher = {{USENIX} Association}, title = {Padding Ain{\textquoteright}t Enough: Assessing the Privacy Guarantees of Encrypted {DNS}}, year = {2020}, }</pre>
DOI: 10.5281/zenodo.7319380
title: Padding Ain't Enough: Assessing the Privacy Guarantees of Encrypted DNS – Subpage-Agnostic Domain Classification Tor Browser

description: This dataset contains the second part of the "Subpage-Agnostic Domain Classification" section of our FOCI 2020 paper "Padding Ain’t Enough: Assessing the Privacy Guarantees of Encrypted DNS". https://www.usenix.org/conference/foci20/presentation/bushart You can find the source code for this project on GitHub: https://github.com/jonasbb/padding-aint-enough When using this software or our dataset, please cite our FOCI 20 paper. <pre>@inproceedings {PaddingAintEnough, author = {Jonas Bushart and Christian Rossow}, booktitle = {10th {USENIX} Workshop on Free and Open Communications on the Internet ({FOCI} 20)}, month = aug, publisher = {{USENIX} Association}, title = {Padding Ain{\textquoteright}t Enough: Assessing the Privacy Guarantees of Encrypted {DNS}}, year = {2020}, }</pre>
DOI: 10.5281/zenodo.7319379
title: Padding Ain't Enough: Assessing the Privacy Guarantees of Encrypted DNS – Subpage-Agnostic Domain Classification Tor Browser

description: This dataset contains the second part of the "Subpage-Agnostic Domain Classification" section of our FOCI 2020 paper "Padding Ain’t Enough: Assessing the Privacy Guarantees of Encrypted DNS". https://www.usenix.org/conference/foci20/presentation/bushart You can find the source code for this project on GitHub: https://github.com/jonasbb/padding-aint-enough When using this software or our dataset, please cite our FOCI 20 paper. <pre>@inproceedings {PaddingAintEnough, author = {Jonas Bushart and Christian Rossow}, booktitle = {10th {USENIX} Workshop on Free and Open Communications on the Internet ({FOCI} 20)}, month = aug, publisher = {{USENIX} Association}, title = {Padding Ain{\textquoteright}t Enough: Assessing the Privacy Guarantees of Encrypted {DNS}}, year = {2020}, }</pre>
DOI: 10.5281/zenodo.6322736
title: Connectome of memristive nanowire networks through graph theory - Dataset

description: This is the dataset of "Connectome of memristive nanowire networks through graph theory"
description: Part of this work was supported by the European project MEMQuD, code 20FUN06, funder ID: 10.13039/100014132. This project (EMPIR 20FUN06 MEMQuD) has received funding from the EMPIR programme co-financed by the Participating States and from the European Union's Horizon 2020 research and innovation programme.
DOI: 10.5281/zenodo.6322735
title: Connectome of memristive nanowire networks through graph theory - Dataset

description: This is the dataset of "Connectome of memristive nanowire networks through graph theory"
description: Part of this work was supported by the European project MEMQuD, code 20FUN06, funder ID: 10.13039/100014132. This project (EMPIR 20FUN06 MEMQuD) has received funding from the EMPIR programme co-financed by the Participating States and from the European Union's Horizon 2020 research and innovation programme.
DOI: 10.25625/1wftoe/5cgv5d
title: Plot_25_DATTUTDUT

description: :unav
DOI: 10.25625/1wftoe/5xgwwr
title: Plot_16_DATTUTDUT

description: :unav
DOI: 10.25625/1wftoe/dhjlkf
title: Plot_13_DATTUTDUT.aux.xml

description: :unav
DOI: 10.25625/1wftoe/fwprlx
title: Plot_10_DATTUTDUT

description: :unav
DOI: 10.25625/1wftoe/ilaicd
title: Plot_51_DATTUTDUT.aux.xml

description: :unav
DOI: 10.25625/1wftoe/owdlap
title: Plot_38_DATTUTDUT.aux.xml

description: :unav
DOI: 10.25625/1wftoe/67dsof
title: Plot_38_DATTUTDUT

description: :unav
DOI: 10.25625/1wftoe/7g8f1e
title: Plot_02_DATTUTDUT

description: :unav
DOI: 10.25625/1wftoe/gngbyo
title: Plot_53_DATTUTDUT.aux.xml

description: :unav
DOI: 10.25625/1wftoe/hgowuk
title: Plot_06_DATTUTDUT

description: :unav
DOI: 10.25625/1wftoe/tt7zoz
title: Plot_52_DATTUTDUT

description: :unav
DOI: 10.25625/1wftoe/tzsrqb
title: Plot_22_DATTUTDUT

description: :unav
DOI: 10.25625/1wftoe/0rodow
title: Plot_22_DATTUTDUT.aux.xml

description: :unav
DOI: 10.25625/1wftoe/3yalkq
title: Plot_13_DATTUTDUT

description: :unav
DOI: 10.25625/1wftoe/4dxdyg
title: Plot_49_DATTUTDUT.aux.xml

description: :unav
DOI: 10.25625/1wftoe/g1vsqt
title: Plot_49_DATTUTDUT

description: :unav
DOI: 10.25625/1wftoe/hcaobj
title: Plot_14_DATTUTDUT.aux.xml

description: :unav
DOI: 10.25625/1wftoe/6jfohs
title: Plot_17_DATTUTDUT.aux.xml

description: :unav
DOI: 10.25625/1wftoe/hy9jzb
title: Plot_21_DATTUTDUT.aux.xml

description: :unav
DOI: 10.25625/1wftoe/q2x6gd
title: Plot_52_DATTUTDUT.aux.xml

description: :unav
DOI: 10.25625/1wftoe/s6x446
title: Plot_11_DATTUTDUT

description: :unav
DOI: 10.25625/1wftoe/ylpxmy
title: Plot_47_DATTUTDUT

description: :unav
DOI: 10.25625/1wftoe/zchcg1
title: Plot_56_DATTUTDUT.aux.xml

description: :unav
DOI: 10.25625/1wftoe/ahd9rx
title: Plot_33_DATTUTDUT.aux.xml

description: :unav
DOI: 10.25625/1wftoe/akfoiy
title: Plot_44_DATTUTDUT.aux.xml

description: :unav
DOI: 10.25625/1wftoe/mmotez
title: Plot_06_DATTUTDUT.aux.xml

description: :unav
DOI: 10.25625/1wftoe/wzfzkt
title: Plot_34_DATTUTDUT

description: :unav
DOI: 10.25625/1wftoe/yriha6
title: Plot_43_DATTUTDUT.aux.xml

description: :unav