cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4119/unibi/2962639
title: Contig sequences derived from selected ‘Börner’ BACs assigned to either of the two parental haplotypes *V. riparia* or *V. cinerea* of the *Vitis* rootstock ‘Börner’

description: BAC sequences from ‘Börner’ assigned to the haplotype derived from *V. riparia* or to the haplotype derived from *V. cinerea* are offered as a dataset. Haplotype assignment is based on read mapping with read data from both parents of ‘Börner’. The BAC sequences were produced in the frame of the project GrapeReSeq and are further described in the paper 'A fully phased interspecific Grapevine Rootstock Genome sequence representing *V. riparia* and *V. cinerea* and allele-aware annotation of the phylloxera resistance locus *Rdv1*'.
DOI: 10.5281/zenodo.6919643
title: Content Analysis on System Dynamics Modelling Application in Agriculture

description: The data is a compilation of journal articles retrieved from three databases - Scopus, Web of Science, and Science Direct, using this Boolean search string: ("system dynamics" OR "systems thinking" OR "causal loop diagram") AND ("Agri*" OR "Food" OR "Crop" OR "Meat" OR "Animal" OR "Livestock")).
DOI: 10.5281/zenodo.6919642
title: Content Analysis on System Dynamics Modelling Application in Agriculture

description: The data is a compilation of journal articles retrieved from three databases - Scopus, Web of Science, and Science Direct, using this Boolean search string: ("system dynamics" OR "systems thinking" OR "causal loop diagram") AND ("Agri*" OR "Food" OR "Crop" OR "Meat" OR "Animal" OR "Livestock")).
DOI: 10.6084/m9.figshare.20390694
title: Transplantation of washed microbiota improves symptoms and intestinal barrier function in patients with functional bowel disorders: propensity score-matched analyses

description: Compared with probiotics, washed microbiota transplantation (WMT) could be a promising treatment for functional bowel disorders (FBDs). We conducted retrospective evaluation of both treatments using propensity score-matched analysis (PSMA).
DOI: 10.6084/m9.figshare.20390694.v1
title: Transplantation of washed microbiota improves symptoms and intestinal barrier function in patients with functional bowel disorders: propensity score-matched analyses

description: Compared with probiotics, washed microbiota transplantation (WMT) could be a promising treatment for functional bowel disorders (FBDs). We conducted retrospective evaluation of both treatments using propensity score-matched analysis (PSMA).
DOI: 10.34740/kaggle/dsv/3995752
title: 1234567890
DOI: 10.21227/kwez-8979
title: IMAGE RECOGNITION PHASED ARRAY

description: This work utilized image recognition technology and beam forming technology to build a phased array with the target tracking and transmitting the microwave with a focused beam. The coordinate position of the target is obtained from the image recognition module and converted into phase information for the phased array. This system was constructed by a 1 × 4 5.764 GHz phased array with four 4-bit phase shifters. The phase shifters formed the focused beam, which requires not only the direction angle of the target but also the transmission distance. Using image recognition, the target position with direction and distance information was estimated. The tracking beam method was evaluated by simulation and actual measurement. The results showed that the focused beam can always be formed to follow the target in real-time. The transfer efficiency of the focused beam was improved greatly than the uniform phase beam within a distance of 50 cm. The response time of the automatic tracking power transmission system is about 100 ms.
DOI: 10.5281/zenodo.6919517
title: Core-shell structured chitosan-polyethylenimine nanoparticles for gene delivery: Improved stability, cellular uptake, and transfection efficiency

description: Gene therapy has emerged as a promising treatment option for various acquired and inherited diseases. The delivery of nucleic acids relies on so-called vectors that condense and encapsulate their cargo, generating stable nano-sized particles. Especially non-viral gene delivery systems are of increasing interest. However, accomplishing therapeutic levels of transgene expression and limited tolerability of these systems remain a challenge. Therefore, we investigate in the present study the improvement of nucleic acid delivery using depolymerized chitosan – polyethylenimine DNA core complexes (dCS-PEI/DNA). These core complexes are further entrapped into a variety of dCS-based shells, functionalized with poly(ethylene glycol) (PEG) spacers conjugated to ionic moieties (amino or carboxylate groups) and cell penetrating peptides. This modular approach allowed to evaluate the effect of the shell functional components on the physico-chemical particle characteristics and biological effects <em>in vitro</em>. The optimized ternary complex combines a core-dCS-LPEI/DNA complex with a shell consisting of dCS-PEG-COOH, which resulted in improved encapsulation of nucleic acid, accelerated cellular uptake, enhanced transfection efficiency, and superior transfection potency in human hepatoma HuH-7 cells and mouse primary hepatocytes. Effects on transgene expression are confirmed <em>in vivo</em> in wild-type mice following retrograde intrabiliary infusion. After administration to mice of only 100 ng complexed nanovector DNA, ternary complexes induce a high reporter gene signal for three days. We conclude that ternary core-shell structured particles comprising functionalized chitosan are a promising gene delivery technology for both <em>in vitro</em> as well as <em>in vivo </em>applications. The modular design will facilitate the development of chemically modified derivatives.
DOI: 10.5281/zenodo.6919516
title: Core-shell structured chitosan-polyethylenimine nanoparticles for gene delivery: Improved stability, cellular uptake, and transfection efficiency

description: Gene therapy has emerged as a promising treatment option for various acquired and inherited diseases. The delivery of nucleic acids relies on so-called vectors that condense and encapsulate their cargo, generating stable nano-sized particles. Especially non-viral gene delivery systems are of increasing interest. However, accomplishing therapeutic levels of transgene expression and limited tolerability of these systems remain a challenge. Therefore, we investigate in the present study the improvement of nucleic acid delivery using depolymerized chitosan – polyethylenimine DNA core complexes (dCS-PEI/DNA). These core complexes are further entrapped into a variety of dCS-based shells, functionalized with poly(ethylene glycol) (PEG) spacers conjugated to ionic moieties (amino or carboxylate groups) and cell penetrating peptides. This modular approach allowed to evaluate the effect of the shell functional components on the physico-chemical particle characteristics and biological effects <em>in vitro</em>. The optimized ternary complex combines a core-dCS-LPEI/DNA complex with a shell consisting of dCS-PEG-COOH, which resulted in improved encapsulation of nucleic acid, accelerated cellular uptake, enhanced transfection efficiency, and superior transfection potency in human hepatoma HuH-7 cells and mouse primary hepatocytes. Effects on transgene expression are confirmed <em>in vivo</em> in wild-type mice following retrograde intrabiliary infusion. After administration to mice of only 100 ng complexed nanovector DNA, ternary complexes induce a high reporter gene signal for three days. We conclude that ternary core-shell structured particles comprising functionalized chitosan are a promising gene delivery technology for both <em>in vitro</em> as well as <em>in vivo </em>applications. The modular design will facilitate the development of chemically modified derivatives.
DOI: 10.21227/vshk-xa74
title: Fast Witness Generation for Readable GUI Test Scenarios via Generalized Experience Replay

description: FARLEAD2 receives a test scenario from the developer, and verifies a related functional behavior by witnessing the test scenario in the Application Under Test, on a real mobile device. The 'results.zip' file contains 204 Comma-Separated Values (CSV) files and a Perl script 'createtable.pl' that generates Table 2 in the manuscript. Each CSV file contains the results of ten runs of a witness generator for a test scenario under a given level of information. The experimental test scenarios are located in the 'scenarios.zip' file.
DOI: 10.6084/m9.figshare.20390796.v1
title: Additional file 1 of Proteomic and phosphoproteomic measurements enhance ability to predict ex vivo drug response in AML

description: Additional file1: Table S1: List of drugs and available samples. Table S2: All identified signatures and their functional enrichment (GSEA/KSEA). Table S3: GO enrichment of network in Figure 3B. Table S4: GO enrichment of network in Figure 3D.
DOI: 10.6084/m9.figshare.20390796
title: Additional file 1 of Proteomic and phosphoproteomic measurements enhance ability to predict ex vivo drug response in AML

description: Additional file1: Table S1: List of drugs and available samples. Table S2: All identified signatures and their functional enrichment (GSEA/KSEA). Table S3: GO enrichment of network in Figure 3B. Table S4: GO enrichment of network in Figure 3D.
DOI: 10.6084/m9.figshare.20390919.v1
title: Additional file 2 of What lies on macroalgal surface: diversity of polysaccharide degraders in culturable epiphytic bacteria

description: Additional file 2: Table S1. Taxonomical identification of the isolates. The 16S rRNA gene for at least one representative of each ITS group was sequenced and taxonomic identification was attributed using Blastn against the NCBI public database. Table S2. Activity levels of all the isolates expressed as the ratio between the degradation halo diameter and the strain growth diameter. This table also contains information about the host species, the enrichment procedure, clustering in ITS groups and taxonomical identification of each isolate. Table S3. Activity levels of the strains showing the highest performance in at least one of the tested activities. Activity level is reported as the ratio between the degradation halo diameter and the strain growth diameter. Highest activity levels are highlighted in grey. Table S4. Summary of the functional potential of the collection on the basis of the isolate phylogeny. We reported the number of isolates (“N. Isol.”) belonging to each genus and the percentage of isolates active for each tested activity. In violet are highlighted the taxonomical groups that include more than 15 isolates. Table S5. PERMANOVA and Monte Carlo test performed on the whole isolate collection activity level. A) Main and B) pairwise comparisons. Pseudo F = pseudo-F ratio. P = permutation P-value. Unique perms = unique values of the test statistic. Pmc = P Monte Carlo value. Asterisk (*) indicates significant differences between samples (P &lt; 0.05). Table S6. PERMANOVA and Monte Carlo test performed on A. taxiformis sub-collection activity level. A) Main test and B) pairwise comparisons. Pseudo F = pseudo-F ratio. P = permutation P-value. 3 Unique perms = unique values of the test statistic. Pmc = P Monte Carlo value. Asterisk (*) indicates significant differences between samples (P &lt; 0.05). Table S7. PERMANOVA and Monte Carlo test performed on H. scoparia sub-collection activity level. A) Main test and B-C) pairwise comparisons according to B) classes and C) orders. Pseudo F = pseudo-F ratio. P = permutation P-value. Unique perms = unique values of the test statistic. Pmc = P Monte Carlo value. Asterisk (*) indicates significant differences between samples (P &lt; 0.05). Table S8. PERMANOVA and Monte Carlo test performed on S. coronopifolius sub-collection activity level. A) Main test and B-C) pairwise comparisons according to B) phyla and C) orders. Pseudo F = pseudo-F ratio. P = permutation P-value. Unique perms = unique values of the test statistic. Pmc = P Monte Carlo value. Asterisk (*) indicates significant differences between samples (P &lt; 0.05).
DOI: 10.6084/m9.figshare.20390919
title: Additional file 2 of What lies on macroalgal surface: diversity of polysaccharide degraders in culturable epiphytic bacteria

description: Additional file 2: Table S1. Taxonomical identification of the isolates. The 16S rRNA gene for at least one representative of each ITS group was sequenced and taxonomic identification was attributed using Blastn against the NCBI public database. Table S2. Activity levels of all the isolates expressed as the ratio between the degradation halo diameter and the strain growth diameter. This table also contains information about the host species, the enrichment procedure, clustering in ITS groups and taxonomical identification of each isolate. Table S3. Activity levels of the strains showing the highest performance in at least one of the tested activities. Activity level is reported as the ratio between the degradation halo diameter and the strain growth diameter. Highest activity levels are highlighted in grey. Table S4. Summary of the functional potential of the collection on the basis of the isolate phylogeny. We reported the number of isolates (“N. Isol.”) belonging to each genus and the percentage of isolates active for each tested activity. In violet are highlighted the taxonomical groups that include more than 15 isolates. Table S5. PERMANOVA and Monte Carlo test performed on the whole isolate collection activity level. A) Main and B) pairwise comparisons. Pseudo F = pseudo-F ratio. P = permutation P-value. Unique perms = unique values of the test statistic. Pmc = P Monte Carlo value. Asterisk (*) indicates significant differences between samples (P &lt; 0.05). Table S6. PERMANOVA and Monte Carlo test performed on A. taxiformis sub-collection activity level. A) Main test and B) pairwise comparisons. Pseudo F = pseudo-F ratio. P = permutation P-value. 3 Unique perms = unique values of the test statistic. Pmc = P Monte Carlo value. Asterisk (*) indicates significant differences between samples (P &lt; 0.05). Table S7. PERMANOVA and Monte Carlo test performed on H. scoparia sub-collection activity level. A) Main test and B-C) pairwise comparisons according to B) classes and C) orders. Pseudo F = pseudo-F ratio. P = permutation P-value. Unique perms = unique values of the test statistic. Pmc = P Monte Carlo value. Asterisk (*) indicates significant differences between samples (P &lt; 0.05). Table S8. PERMANOVA and Monte Carlo test performed on S. coronopifolius sub-collection activity level. A) Main test and B-C) pairwise comparisons according to B) phyla and C) orders. Pseudo F = pseudo-F ratio. P = permutation P-value. Unique perms = unique values of the test statistic. Pmc = P Monte Carlo value. Asterisk (*) indicates significant differences between samples (P &lt; 0.05).
DOI: 10.6084/m9.figshare.20390934
title: Additional file 1 of Examining patient flow in a tertiary hospital’s emergency department at a low coronavirus prevalence region

description: Additional file 1: Supplemental Table 1. Daily datasets of emergency department input, throughput, and output parameters from 2019 to 2020. DAMA: discharge against medical advice; IHCA: in-hospital cardiac arrest; LOS: length of stay; OHCA: out-of-hospital cardiac arrest.
DOI: 10.6084/m9.figshare.20390934.v1
title: Additional file 1 of Examining patient flow in a tertiary hospital’s emergency department at a low coronavirus prevalence region

description: Additional file 1: Supplemental Table 1. Daily datasets of emergency department input, throughput, and output parameters from 2019 to 2020. DAMA: discharge against medical advice; IHCA: in-hospital cardiac arrest; LOS: length of stay; OHCA: out-of-hospital cardiac arrest.
DOI: 10.6084/m9.figshare.20390937
title: Additional file 2 of Examining patient flow in a tertiary hospital’s emergency department at a low coronavirus prevalence region

description: Additional file 2: Supplemental Table 2. Monthly datasets of emergency department arrival modes, adverse outcomes, and admission numbers from February 2019 to December 2019, and from February 2020 to December 2020. ED: emergency department; EMS: emergency medical service; IHCA: in-hospital cardiac arrest; OHCA: out-of-hospital cardiac arrest.
DOI: 10.6084/m9.figshare.20390937.v1
title: Additional file 2 of Examining patient flow in a tertiary hospital’s emergency department at a low coronavirus prevalence region

description: Additional file 2: Supplemental Table 2. Monthly datasets of emergency department arrival modes, adverse outcomes, and admission numbers from February 2019 to December 2019, and from February 2020 to December 2020. ED: emergency department; EMS: emergency medical service; IHCA: in-hospital cardiac arrest; OHCA: out-of-hospital cardiac arrest.
DOI: 10.6084/m9.figshare.20390951
title: Additional file 1 of Application of chloroplast genome in the identification of Traditional Chinese Medicine Viola philippica

description: Additional file 1: Fig. S1. Comparisons of LSC, SSC, and IR region borders among 17 chloroplast genomes. Fig. S2. Repeat sequences analysis of 17 cp genomes. Fig. S3. Maximum Likelihood (ML) and Bayesian Inference (BI) phylogenetic trees are based on 16 highly diverged regions. Fig. S4. The variable sites in ndhF, rpl22, and ycf1 of Viola philippica. Fig. S5. Maximum Likelihood (ML) and Bayesian Inference (BI) phylogenetic trees are based on complete chloroplast genome. Fig. S6. Original electrophoretogram for four sequence fragments with unique variable sites in 14 newly sequenced Viola species.
DOI: 10.6084/m9.figshare.20390951.v1
title: Additional file 1 of Application of chloroplast genome in the identification of Traditional Chinese Medicine Viola philippica

description: Additional file 1: Fig. S1. Comparisons of LSC, SSC, and IR region borders among 17 chloroplast genomes. Fig. S2. Repeat sequences analysis of 17 cp genomes. Fig. S3. Maximum Likelihood (ML) and Bayesian Inference (BI) phylogenetic trees are based on 16 highly diverged regions. Fig. S4. The variable sites in ndhF, rpl22, and ycf1 of Viola philippica. Fig. S5. Maximum Likelihood (ML) and Bayesian Inference (BI) phylogenetic trees are based on complete chloroplast genome. Fig. S6. Original electrophoretogram for four sequence fragments with unique variable sites in 14 newly sequenced Viola species.
DOI: 10.21227/0xjv-xr11
title: Obtaining Tactile Information From EIT

description: The data includes the results obtained in the manuscript "Obtaining Enriched Tactile Information from Large Sensing Area Based on Electrical Impedance Tomography".
DOI: 10.6084/m9.figshare.20390715
title: Data : Past climate-driven range shifts structuring intraspecific biodiversity levels of the giant kelp (Macrocystis pyrifera) at global scales

description: Data : Past climate-driven range shifts structuring intraspecific biodiversity levels of the giant kelp (Macrocystis pyrifera) at global scales
DOI: 10.34740/kaggle/dsv/3995850
title: AutoXGB
DOI: 10.6084/m9.figshare.20391035.v1
title: Additional file 1 of Tandem repeats ubiquitously flank and contribute to translation initiation sites

description: Additional file 1 Additional Table 1. The number of genes, transcripts and extracted TRs for each species. The rows of the table are sorted from large to small, based on the ratio of the number of TRs to the number of genes and transcripts in each species.
DOI: 10.6084/m9.figshare.20391041
title: Additional file 3 of Tandem repeats ubiquitously flank and contribute to translation initiation sites

description: Additional file 3 Additional Table 3. The list of all human genes and their Ensembl gene ID, which contained human-specific TRs in their TIS-flanking sequence for TR categories 1, 2, 3, and 4.
DOI: 10.6084/m9.figshare.20391044
title: Additional file 4 of Tandem repeats ubiquitously flank and contribute to translation initiation sites

description: Additional file 4 Additional Table 4. The list of all human specific TRs and their abundance.
DOI: 10.6084/m9.figshare.20391035
title: Additional file 1 of Tandem repeats ubiquitously flank and contribute to translation initiation sites

description: Additional file 1 Additional Table 1. The number of genes, transcripts and extracted TRs for each species. The rows of the table are sorted from large to small, based on the ratio of the number of TRs to the number of genes and transcripts in each species.
DOI: 10.6084/m9.figshare.20391041.v1
title: Additional file 3 of Tandem repeats ubiquitously flank and contribute to translation initiation sites

description: Additional file 3 Additional Table 3. The list of all human genes and their Ensembl gene ID, which contained human-specific TRs in their TIS-flanking sequence for TR categories 1, 2, 3, and 4.
DOI: 10.25415/ujhb.20390595
title: Insight into the relationship of redox ability and separation efficiency via the case of α-Bi2O3/Bi5NO3O7

description: Constructing heterostructured photocatalysts will generally improve the separation efficiency of photo-induced carriers; however, the change in the energy band position that affects their redox ability has received little attention. In this work, α-Bi2O3/Bi5NO3O7 heterojunctions are prepared <em>via</em> solution combustion synthesis and characterized by UV-vis DRS, Mott–Schottky and Kelvin probes, and the band structures of α-Bi2O3 and Bi5NO3O7 before and after the formation of the heterojunction are obtained. The results of the degradation of rhodamine B and tetracycline indicate that the main active species are holes and superoxide anion radicals, respectively. Although separation efficiency over heterojunctions is higher than that over individual Bi5NO3O7 and α-Bi2O3, lower degradation ability is observed. The reason is that the heterojunction formation causes an upward shift of the valence band of Bi5NO3O7 and a downward shift of the conduction band of α-Bi2O3, which reduces the oxidation ability of holes and the ability to activate molecular oxygen, respectively. The decrease in the redox ability outweighs the positive impact of enhanced separation efficiency.
DOI: 10.25415/ujhb.20390595.v1
title: Insight into the relationship of redox ability and separation efficiency via the case of α-Bi2O3/Bi5NO3O7

description: Constructing heterostructured photocatalysts will generally improve the separation efficiency of photo-induced carriers; however, the change in the energy band position that affects their redox ability has received little attention. In this work, α-Bi2O3/Bi5NO3O7 heterojunctions are prepared <em>via</em> solution combustion synthesis and characterized by UV-vis DRS, Mott–Schottky and Kelvin probes, and the band structures of α-Bi2O3 and Bi5NO3O7 before and after the formation of the heterojunction are obtained. The results of the degradation of rhodamine B and tetracycline indicate that the main active species are holes and superoxide anion radicals, respectively. Although separation efficiency over heterojunctions is higher than that over individual Bi5NO3O7 and α-Bi2O3, lower degradation ability is observed. The reason is that the heterojunction formation causes an upward shift of the valence band of Bi5NO3O7 and a downward shift of the conduction band of α-Bi2O3, which reduces the oxidation ability of holes and the ability to activate molecular oxygen, respectively. The decrease in the redox ability outweighs the positive impact of enhanced separation efficiency.