cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6214835.v1
title: Additional file 1: of Two independent proteomic approaches provide a comprehensive analysis of the synovial fluid proteome response to Autologous Chondrocyte Implantation

description: Table S1. Canonical pathways altered in the synovial fluid of clinical nonresponders at stage I compared with stage II of ACI, identified using Ingenuity Pathway Analysis based on proteins that were identified using iTRAQ proteomics (≥ 1.2-fold change). Significance was assessed using a right-sided Fisher’s exact test; therefore, the most significant canonical pathways represent those that are the least likely to have been identified because of molecules being in the canonical pathway by random chance. The z-score represents canonical pathways that are likely activated or inhibited (based on the pattern of differentially abundant proteins); NaN means no prediction could be made based on the number of differentially abundant proteins in the pathway. Table S2. Canonical pathways altered in the synovial fluid of clinical responders at stage I compared with stage II of ACI, identified using Ingenuity Pathway Analysis, based on proteins which were identified using iTRAQ proteomics (≥ 1.2-fold change). Significance was assessed using a right-sided Fisher’s exact test; therefore, the most significant canonical pathways represent those that are the least likely to have been identified because of molecules being in the canonical pathway by random chance. The z-score represents canonical pathways that are likely activated or inhibited (based on the pattern of differentially abundant proteins); NaN means no prediction could be made based on the number of differentially abundant proteins in the pathway. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.6214811
title: Additional file 9: of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S11. List of all genes within cluster 9. Average log2 transcriptions of individual probe sets under individual treatments are displayed as well as log2 FC of individual treatments against non-treated samples. Manufacturer annotation of individual IDs along with HarvEST annotation of individual AGIs is included. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6214811.v1
title: Additional file 9: of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S11. List of all genes within cluster 9. Average log2 transcriptions of individual probe sets under individual treatments are displayed as well as log2 FC of individual treatments against non-treated samples. Manufacturer annotation of individual IDs along with HarvEST annotation of individual AGIs is included. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6214796
title: Additional file 8: of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S10. List of all genes within cluster 8. Average log2 transcriptions of individual probe sets under individual treatments are displayed as well as log2 FC of individual treatments against non-treated samples. Manufacturer annotation of individual IDs along with HarvEST annotation of individual AGIs is included. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.6214796.v1
title: Additional file 8: of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S10. List of all genes within cluster 8. Average log2 transcriptions of individual probe sets under individual treatments are displayed as well as log2 FC of individual treatments against non-treated samples. Manufacturer annotation of individual IDs along with HarvEST annotation of individual AGIs is included. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.6214775
title: Additional file 7: of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S9. List of all genes within cluster 7. Average log2 transcriptions of individual probe sets under individual treatments are displayed as well as log2 FC of individual treatments against non-treated samples. Manufacturer annotation of individual IDs along with HarvEST annotation of individual AGIs is included. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.6214775.v1
title: Additional file 7: of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S9. List of all genes within cluster 7. Average log2 transcriptions of individual probe sets under individual treatments are displayed as well as log2 FC of individual treatments against non-treated samples. Manufacturer annotation of individual IDs along with HarvEST annotation of individual AGIs is included. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.6214772
title: Additional file 11: of Phylogenomics provides a robust topology of the major cnidarian lineages and insights on the origins of key organismal traits

description: Table of taxonomic distributions and taxon occupancy comparing the current and previous phylogenomic studies of Cnidaria. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.6214772.v1
title: Additional file 11: of Phylogenomics provides a robust topology of the major cnidarian lineages and insights on the origins of key organismal traits

description: Table of taxonomic distributions and taxon occupancy comparing the current and previous phylogenomic studies of Cnidaria. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.6214757
title: Additional file 6: of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S8. List of all genes within cluster 6. Average log2 transcriptions of individual probe sets under individual treatments are displayed as well as log2 FC of individual treatments against non-treated samples. Manufacturer annotation of individual IDs along with HarvEST annotation of individual AGIs is included. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.6214757.v1
title: Additional file 6: of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S8. List of all genes within cluster 6. Average log2 transcriptions of individual probe sets under individual treatments are displayed as well as log2 FC of individual treatments against non-treated samples. Manufacturer annotation of individual IDs along with HarvEST annotation of individual AGIs is included. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.6214730
title: Additional file 5: of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S7. List of all genes within cluster 5. Average log2 transcriptions of individual probe sets under individual treatments are displayed as well as log2 FC of individual treatments against non-treated samples. Manufacturer annotation of individual IDs along with HarvEST annotation of individual AGIs is included. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.6214730.v1
title: Additional file 5: of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S7. List of all genes within cluster 5. Average log2 transcriptions of individual probe sets under individual treatments are displayed as well as log2 FC of individual treatments against non-treated samples. Manufacturer annotation of individual IDs along with HarvEST annotation of individual AGIs is included. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.6214718
title: Additional file 4: of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S6. List of all genes within cluster 4. Average log2 transcriptions of individual probe sets under individual treatments are displayed as well as log2 FC of individual treatments against non-treated samples. Manufacturer annotation of individual IDs along with HarvEST annotation of individual AGIs is included. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.6214718.v1
title: Additional file 4: of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S6. List of all genes within cluster 4. Average log2 transcriptions of individual probe sets under individual treatments are displayed as well as log2 FC of individual treatments against non-treated samples. Manufacturer annotation of individual IDs along with HarvEST annotation of individual AGIs is included. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.6214697
title: Additional file 3: of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S5. List of all genes within cluster 3. Average log2 transcriptions of individual probe sets under individual treatments are displayed as well as log2 FC of individual treatments against non-treated samples. Manufacturer annotation of individual IDs along with HarvEST annotation of individual AGIs is included. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.6214697.v1
title: Additional file 3: of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S5. List of all genes within cluster 3. Average log2 transcriptions of individual probe sets under individual treatments are displayed as well as log2 FC of individual treatments against non-treated samples. Manufacturer annotation of individual IDs along with HarvEST annotation of individual AGIs is included. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.6214685
title: Additional file 2: of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S4. List of all genes within cluster 2. Average log2 transcriptions of individual probe sets under individual treatments are displayed as well as log2 FC of individual treatments against non-treated samples. Manufacturer annotation of individual IDs along with HarvEST annotation of individual AGIs is included. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.6214685.v1
title: Additional file 2: of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S4. List of all genes within cluster 2. Average log2 transcriptions of individual probe sets under individual treatments are displayed as well as log2 FC of individual treatments against non-treated samples. Manufacturer annotation of individual IDs along with HarvEST annotation of individual AGIs is included. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.6214664
title: Additional file 1: of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S3. List of all genes within cluster 1. Average log2 transcriptions of individual probe sets under individual treatments are displayed as well as log2 FC of individual treatments against non-treated samples. Manufacturer annotation of individual IDs along with HarvEST annotation of individual AGIs is included. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.6214664.v1
title: Additional file 1: of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S3. List of all genes within cluster 1. Average log2 transcriptions of individual probe sets under individual treatments are displayed as well as log2 FC of individual treatments against non-treated samples. Manufacturer annotation of individual IDs along with HarvEST annotation of individual AGIs is included. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.6214634
title: Additional file 13: of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S2. Ranking of candidate reference genes according to used algorithms (GeNorm, NormFinder, BestKeeper and RefFinder). (XLSX 9 kb)
DOI: 10.6084/m9.figshare.6214634.v1
title: Additional file 13: of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S2. Ranking of candidate reference genes according to used algorithms (GeNorm, NormFinder, BestKeeper and RefFinder). (XLSX 9 kb)
DOI: 10.6084/m9.figshare.6214622
title: Additional file 12: of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S1. Comparison of qRT-PCR and Microarray results for selected set of genes. Comparison of qRT-PCR and Microarray results for selected set of genes. Transcription fold changes between treated samples (2, 4.5 and 8 h of dehydration) and non-treated samples (0 h of dehydration) were calculated for both qRT-PCR and Microarray data. qRT-PCR values were obtained by delta Ct method and normalized to selected reference genes. Microarray data were normalized and Log2 fold change values were transformed to non-logarithmic scale for the comparison. Values of transcription fold change bellow 1 depicts the gene down-regulation under particular treatment, while the fold changes above 1 shows the up-regulation of gene under particular treatment. NPH4 - Transcriptional factor B3 family protein, PIP – PIP aquaporin, PI3PK - phosphatidylinositol-3P 5-kinase -,LTPG5 – glycosylphosphatidylinositol-anchored lipid transfer protein 5, PGLAC - phospholipid/glycerol acyltransferase, WSI76 – galactinol synthase, PRMT10 - histone-arginine-N-methyltransferase, ABC - ABC transporter, NCED - 9-cis-epoxycarotenoid dioxygenase, DHN6 – Dehydrin DHN6, GLTP – glycolipid transfer protein, WRAB1 - ABA-inducible protein WRAB1, DHN9 – dehydrin DHN9, CEK4 - choline/ethanolamine kinase 4, TIP1;3 – tonoplast intrinsic protein 1;3, HB16 - homeobox protein 16. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.6214622.v1
title: Additional file 12: of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S1. Comparison of qRT-PCR and Microarray results for selected set of genes. Comparison of qRT-PCR and Microarray results for selected set of genes. Transcription fold changes between treated samples (2, 4.5 and 8 h of dehydration) and non-treated samples (0 h of dehydration) were calculated for both qRT-PCR and Microarray data. qRT-PCR values were obtained by delta Ct method and normalized to selected reference genes. Microarray data were normalized and Log2 fold change values were transformed to non-logarithmic scale for the comparison. Values of transcription fold change bellow 1 depicts the gene down-regulation under particular treatment, while the fold changes above 1 shows the up-regulation of gene under particular treatment. NPH4 - Transcriptional factor B3 family protein, PIP – PIP aquaporin, PI3PK - phosphatidylinositol-3P 5-kinase -,LTPG5 – glycosylphosphatidylinositol-anchored lipid transfer protein 5, PGLAC - phospholipid/glycerol acyltransferase, WSI76 – galactinol synthase, PRMT10 - histone-arginine-N-methyltransferase, ABC - ABC transporter, NCED - 9-cis-epoxycarotenoid dioxygenase, DHN6 – Dehydrin DHN6, GLTP – glycolipid transfer protein, WRAB1 - ABA-inducible protein WRAB1, DHN9 – dehydrin DHN9, CEK4 - choline/ethanolamine kinase 4, TIP1;3 – tonoplast intrinsic protein 1;3, HB16 - homeobox protein 16. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.6214595
title: Additional file 11: of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S13. List of all DTGs (810) specific to Couch Grass treated samples. Log2 FC of individual treatments against non-treated samples are displayed along with. Manufacturer annotation of individual IDs and HarvEST annotation of individual AGIs. (XLSX 122 kb)
DOI: 10.6084/m9.figshare.6214595.v1
title: Additional file 11: of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S13. List of all DTGs (810) specific to Couch Grass treated samples. Log2 FC of individual treatments against non-treated samples are displayed along with. Manufacturer annotation of individual IDs and HarvEST annotation of individual AGIs. (XLSX 122 kb)
DOI: 10.6084/m9.figshare.6214574
title: Additional file 10 of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S12. List of all genes within cluster 10. Average log2 transcriptions of individual probe sets under individual treatments are displayed as well as log2 FC of individual treatments against non-treated samples. Manufacturer annotation of individual IDs along with HarvEST annotation of individual AGIs is included. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.6214574.v1
title: Additional file 10 of The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

description: Table S12. List of all genes within cluster 10. Average log2 transcriptions of individual probe sets under individual treatments are displayed as well as log2 FC of individual treatments against non-treated samples. Manufacturer annotation of individual IDs along with HarvEST annotation of individual AGIs is included. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.6214538
title: MOESM3 of Joining the dots: reconstructing 3D environments and movement paths using animal-borne devices

description: Additional file 3. The RANSAC labelled tree trunks are again displayed in green (83 in total). An elevation filter was applied to the ground returns, highlighting the vertical decline (8.70 m). Note that an additional voxel grid filter (leaf size 0.045 m) was applied to the ground segment in order to improve rendering performance. Extract the .ZIP archive and open `index.htmlâ in a WebGL supporting web browser (e.g. FireFox 4.0+ or chrome 9.0+) to view in 3D with rotation and zoom options.
DOI: 10.6084/m9.figshare.6214538.v1
title: MOESM3 of Joining the dots: reconstructing 3D environments and movement paths using animal-borne devices

description: Additional file 3. The RANSAC labelled tree trunks are again displayed in green (83 in total). An elevation filter was applied to the ground returns, highlighting the vertical decline (8.70 m). Note that an additional voxel grid filter (leaf size 0.045 m) was applied to the ground segment in order to improve rendering performance. Extract the .ZIP archive and open `index.htmlâ in a WebGL supporting web browser (e.g. FireFox 4.0+ or chrome 9.0+) to view in 3D with rotation and zoom options.
DOI: 10.6084/m9.figshare.6214517
title: MOESM2 of Joining the dots: reconstructing 3D environments and movement paths using animal-borne devices

description: Additional file 2. The RANSAC labelled tree trunks are displayed in green (28 of 30). An elevation filter was applied to the ground returns. Extract the .ZIP archive and open `index.htmlâ in a WebGL supporting web browser (e.g. FireFox 4.0+ or chrome 9.0+) to view in 3D with rotation and zoom options.
DOI: 10.6084/m9.figshare.6214517.v1
title: MOESM2 of Joining the dots: reconstructing 3D environments and movement paths using animal-borne devices

description: Additional file 2. The RANSAC labelled tree trunks are displayed in green (28 of 30). An elevation filter was applied to the ground returns. Extract the .ZIP archive and open `index.htmlâ in a WebGL supporting web browser (e.g. FireFox 4.0+ or chrome 9.0+) to view in 3D with rotation and zoom options.
DOI: 10.6084/m9.figshare.6214478
title: Additional file 2: of A novel mutation in the TG gene (G2322S) causing congenital hypothyroidism in a Sudanese family: a case report

description: Table S2. Exonic variants in the TG gene identified in the proposita by whole exome sequencing. All exonic variants in the TG gene identified in the proposita. (XLSX 41Â kb)
DOI: 10.6084/m9.figshare.6214478.v1
title: Additional file 2: of A novel mutation in the TG gene (G2322S) causing congenital hypothyroidism in a Sudanese family: a case report

description: Table S2. Exonic variants in the TG gene identified in the proposita by whole exome sequencing. All exonic variants in the TG gene identified in the proposita. (XLSX 41Â kb)
DOI: 10.6084/m9.figshare.6214457
title: Additional file 1: of A novel mutation in the TG gene (G2322S) causing congenital hypothyroidism in a Sudanese family: a case report

description: Table S1. Genes related to thyroid disorder. 50 genes related to thyroid development, function, serum and cell TH transport and hormone synthesis. (XLSX 30Â kb)
DOI: 10.6084/m9.figshare.6214457.v1
title: Additional file 1: of A novel mutation in the TG gene (G2322S) causing congenital hypothyroidism in a Sudanese family: a case report

description: Table S1. Genes related to thyroid disorder. 50 genes related to thyroid development, function, serum and cell TH transport and hormone synthesis. (XLSX 30Â kb)
DOI: 10.6084/m9.figshare.6214451
title: Additional file 1: of Nature experience promotes preference for and willingness to coexist with wild animals among urban and suburban residents in Malaysia

description: Nature experience promotes preference for and willingness to coexist with wild animals among urban and suburban residents in Malaysia. (CSV 36Â kb)
DOI: 10.6084/m9.figshare.6214451.v1
title: Additional file 1: of Nature experience promotes preference for and willingness to coexist with wild animals among urban and suburban residents in Malaysia

description: Nature experience promotes preference for and willingness to coexist with wild animals among urban and suburban residents in Malaysia. (CSV 36Â kb)