cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4797523
title: practice_move_data

description: movement data
DOI: 10.6084/m9.figshare.4797535.v1
title: New insight into hybridization and unidirectional introgression between Ammodytes japonicus and Ammodytes heian (Trachiniformes, Ammodytidae)

description: <strong>Table 5. The number of sand lance individuals in each location and proportion of individuals in two clusters inferred by STRUCTURE analysis based on seven microsatellite loci.</strong>
DOI: 10.6084/m9.figshare.4797523.v1
title: practice_move_data

description: movement data
DOI: 10.6084/m9.figshare.4797526.v2
title: Pairwise FST values in seven microsatellite loci.

description: Pairwise FST values between the five locations (below diagonal) and pairwise P values (above diagonal) in seven microsatellite loci.
DOI: 10.6084/m9.figshare.4797532.v1
title: New insight into hybridization and unidirectional introgression between Ammodytes japonicus and Ammodytes heian (Trachiniformes, Ammodytidae)

description: <strong>Table 4. Relative gene flow rate among five locations of sand lance based on seven microsatellite loci.</strong>
DOI: 10.6084/m9.figshare.4797520
title: Genetic variation at seven microsatellite loci in Korean and Japanese sand lances.

description: Genetic variations including total number of alleles (N), average number of alleles (Na), observed (HO) and expected (HE) heterozygosities, polymorphic information content (PIC), probability value estimates regarding deviation from Hardy–Weinberg equilibrium (P), inbreeding coefficient (FIS) and allelic richness.
DOI: 10.6084/m9.figshare.4797526.v1
title: New insight into hybridization and unidirectional introgression between Ammodytes japonicus and Ammodytes heian (Trachiniformes, Ammodytidae)

description: <strong>Table 3. Pairwise FST values between the five locations (below diagonal) and pairwise P values (above diagonal) in seven microsatellite loci.</strong>
DOI: 10.6084/m9.figshare.4797538.v3
title: Pairwise Fst values in seven microsatellite loci.

description: Pairwise Fst values between locations_lineages (below diagonal) and pairwise P values (above diagonal) in seven microsatellite loci.<br>
DOI: 10.6084/m9.figshare.4797538.v2
title: New insight into hybridization and unidirectional introgression between Ammodytes japonicus and Ammodytes heian (Trachiniformes, Ammodytidae)

description: <strong>S1 Table. Pairwise Fst values between locations_lineages (below diagonal) and pairwise P values (above diagonal) in seven microsatellite loci.</strong><br>
DOI: 10.6084/m9.figshare.4797520.v1
title: New insight into hybridization and unidirectional introgression between Ammodytes japonicus and Ammodytes heian (Trachiniformes, Ammodytidae)

description: <strong>Table 2. Genetic variation at seven microsatellite loci in Korean and Japanese sand lances.</strong>
DOI: 10.6084/m9.figshare.4797520.v3
title: Genetic variation at seven microsatellite loci in Korean and Japanese sand lances.

description: Genetic variations including total number of alleles (N), average number of alleles (Na), observed (HO) and expected (HE) heterozygosities, polymorphic information content (PIC), probability value estimates regarding deviation from Hardy–Weinberg equilibrium (P), inbreeding coefficient (FIS) and allelic richness.
DOI: 10.6084/m9.figshare.4797520.v2
title: New insight into hybridization and unidirectional introgression between Ammodytes japonicus and Ammodytes heian (Trachiniformes, Ammodytidae)

description: <strong>Table 2. Genetic variation at seven microsatellite loci in Korean and Japanese sand lances.</strong>
DOI: 10.6084/m9.figshare.4797367
title: Code for Attaching SF tips to LF backbone, and input code

description: The code in BindingSFandLF.R file copies mammal family branching pattern from SF phylogeny (Bininda-Emonds et al. 2007) and attaches it on the corresponding branch in the LF phylogeny (Meredith et al. 2011).<br><br>The two .in files are input files for BayesTraits analyses.<br>SUMMARY.R processes BayesTraits posteriors
DOI: 10.6084/m9.figshare.4797289
title: <i>Calanoides natalis</i> Brady, 1914 (Copepoda: Calanoida: Calanidae): identity and distribution in relation to coastal oceanography of the eastern Atlantic and western Indian Oceans

description: Until recently, <i>Calanoides carinatus</i> s.l. was assumed to be very widespread in the upwelling systems of the Atlantic, Indian and western Pacific Oceans. Molecular data, reported here, show that <i>Calanoides</i> from the eastern Atlantic and Arabian Sea are one species and distinct from <i>C. carinatus</i> s.s. The name <i>Calanoides natalis</i> Brady, 1914 is available for this species, which is fully re-described. The illustration by Brady of the male fifth leg and the currently reported genetic data lead us to conclude that <i>C. natalis</i> is distributed from the Bay of Biscay southwards along the eastern Atlantic, around the Cape of Good Hope, and northwards along the western boundary of the Indian Ocean as far as the Arabian Sea. A by-product of this study is the recognition that <i>Calanoides macrocarinatus</i> is a junior synonym of <i>Calanoides brevicornis</i>. Females of <i>C. </i><i>natalis</i> are easy to distinguish morphologically from <i>C. carinatus</i> s.s. but are more similar to <i>C. brevicornis</i>, apart from size differences. From physical oceanographic evidence we conclude that the Indian Ocean is currently the upstream part of the distribution of <i>C. natalis. Calanoides philippinensis</i> is known to extend into the eastern Indian Ocean at tropical latitudes. It is not known if it is <i>C. philippinensis</i> that has been recorded along the western coast of Australia. An apparently undescribed species of <i>Calanoides</i> occurs on the eastern Australian coast.
DOI: 10.6084/m9.figshare.4797271
title: Collection information of Korean and Japanese sand lance.

description: Collection information of sand lance specimens used in this study.
DOI: 10.6084/m9.figshare.4797286
title: Inhibition of hepatitis B viral entry by nucleic acid polymers in HepaRG cells and primary human hepatocytes

description: All data are presented as percentage relative to control of each independent experiment.<br><br><br>
DOI: 10.6084/m9.figshare.4797289.v1
title: <i>Calanoides natalis</i> Brady, 1914 (Copepoda: Calanoida: Calanidae): identity and distribution in relation to coastal oceanography of the eastern Atlantic and western Indian Oceans

description: Until recently, <i>Calanoides carinatus</i> s.l. was assumed to be very widespread in the upwelling systems of the Atlantic, Indian and western Pacific Oceans. Molecular data, reported here, show that <i>Calanoides</i> from the eastern Atlantic and Arabian Sea are one species and distinct from <i>C. carinatus</i> s.s. The name <i>Calanoides natalis</i> Brady, 1914 is available for this species, which is fully re-described. The illustration by Brady of the male fifth leg and the currently reported genetic data lead us to conclude that <i>C. natalis</i> is distributed from the Bay of Biscay southwards along the eastern Atlantic, around the Cape of Good Hope, and northwards along the western boundary of the Indian Ocean as far as the Arabian Sea. A by-product of this study is the recognition that <i>Calanoides macrocarinatus</i> is a junior synonym of <i>Calanoides brevicornis</i>. Females of <i>C. </i><i>natalis</i> are easy to distinguish morphologically from <i>C. carinatus</i> s.s. but are more similar to <i>C. brevicornis</i>, apart from size differences. From physical oceanographic evidence we conclude that the Indian Ocean is currently the upstream part of the distribution of <i>C. natalis. Calanoides philippinensis</i> is known to extend into the eastern Indian Ocean at tropical latitudes. It is not known if it is <i>C. philippinensis</i> that has been recorded along the western coast of Australia. An apparently undescribed species of <i>Calanoides</i> occurs on the eastern Australian coast.
DOI: 10.6084/m9.figshare.4797367.v1
title: Code for Attaching SF tips to LF backbone, and input code

description: The code in BindingSFandLF.R file copies mammal family branching pattern from SF phylogeny (Bininda-Emonds et al. 2007) and attaches it on the corresponding branch in the LF phylogeny (Meredith et al. 2011).<br><br>The two .in files are input files for BayesTraits analyses.<br>SUMMARY.R processes BayesTraits posteriors
DOI: 10.6084/m9.figshare.4797271.v1
title: New insight into hybridization and unidirectional introgression between Ammodytes japonicus and Ammodytes heian (Trachiniformes, Ammodytidae)

description: <strong>Table 1. Collection infromation of sand lance specimens used in this study.</strong>
DOI: 10.6084/m9.figshare.4797271.v3
title: Collection information of Korean and Japanese sand lance.

description: Collection information of sand lance specimens used in this study.
DOI: 10.6084/m9.figshare.4797247
title: Nucleos(t)ide analogues for preventing HBV reactivation in immunosuppressed patients with hematological malignancies: a network meta-analysis

description: <b>Background</b>: We aimed to evaluate the efficacy of five oral nucleos(t)ide analogues (NAs), including lamivudine, entecavir, adefovir, telbivudine and tenofovir, for the prevention of hepatitis B virus (HBV) reactivation and HBV-related complications in chronic hepatitis B virus (CHB) infected patients with hematological malignancies receiving chemotherapy or hematopoietic stem cell transplantation (HSCT) by network meta-analysis. <b>Methods</b>: The search identified 28 articles involving 5 different prophylactic regimens covering 1478 participants. <b>Results</b>: Among five prophylactic regimes, tenofovir (predicted probability, 90%), was the most effective intervention followed by entecavir (88%) in preventing HBV reactivation. There was no significant difference between tenofovir and entecavir for preventing HBV reactivation. With regards to other outcomes, tenofovir and telbivudine was not included to evaluate due to lack of relevant studies. Entecavir was the most effective intervention in reducing the risk of HBV related hepatitis (100%), HBV related death (61%) and all other causes of hepatitis (98%). <b>Conclusion</b>: Tenofovir and entecavir might be the most potent regimes in prevention of HBV reactivation for CHB infected patients with hematological malignancies undergoing chemotherapy or HSCT.
DOI: 10.6084/m9.figshare.4797271.v2
title: Collection information of Korean and Japanese sand lance

description: Collection information of sand lance specimens used in this study.
DOI: 10.6084/m9.figshare.4797247.v1
title: Nucleos(t)ide analogues for preventing HBV reactivation in immunosuppressed patients with hematological malignancies: a network meta-analysis

description: <b>Background</b>: We aimed to evaluate the efficacy of five oral nucleos(t)ide analogues (NAs), including lamivudine, entecavir, adefovir, telbivudine and tenofovir, for the prevention of hepatitis B virus (HBV) reactivation and HBV-related complications in chronic hepatitis B virus (CHB) infected patients with hematological malignancies receiving chemotherapy or hematopoietic stem cell transplantation (HSCT) by network meta-analysis. <b>Methods</b>: The search identified 28 articles involving 5 different prophylactic regimens covering 1478 participants. <b>Results</b>: Among five prophylactic regimes, tenofovir (predicted probability, 90%), was the most effective intervention followed by entecavir (88%) in preventing HBV reactivation. There was no significant difference between tenofovir and entecavir for preventing HBV reactivation. With regards to other outcomes, tenofovir and telbivudine was not included to evaluate due to lack of relevant studies. Entecavir was the most effective intervention in reducing the risk of HBV related hepatitis (100%), HBV related death (61%) and all other causes of hepatitis (98%). <b>Conclusion</b>: Tenofovir and entecavir might be the most potent regimes in prevention of HBV reactivation for CHB infected patients with hematological malignancies undergoing chemotherapy or HSCT.
DOI: 10.6084/m9.figshare.4796791
title: Data

description: Dataset for a manuscript submitted to PLoS ONE
DOI: 10.6084/m9.figshare.4796734
title: Identification and detoxification of glycolaldehyde, an unattended bioethanol fermentation inhibitor

description: Although there have been approximately 60 chemical compounds identified as potent fermentation inhibitors in lignocellulose hydrolysate, our research group recently discovered glycolaldehyde as a key fermentation inhibitor during second generation biofuel production. Accordingly, we have developed a yeast <i>S. cerevisiae</i> strain exhibiting tolerance to glycolaldehyde. During this glycolaldehyde study, we established novel approaches for rational engineering of inhibitor-tolerant <i>S. cerevisiae</i> strains, including engineering redox cofactors and engineering the SUMOylation pathway. These new technical dimensions provide a novel platform for engineering <i>S. cerevisiae</i> strains to overcome one of the key barriers for industrialization of lignocellulosic ethanol production. As such, this review discusses novel biochemical insight of glycolaldehyde in the context of the biofuel industry.
DOI: 10.6084/m9.figshare.4796791.v1
title: Data

description: Dataset for a manuscript submitted to PLoS ONE
DOI: 10.4225/03/58db417642745
title: Why background colour matters to bees and flowers

description: This text comma separated value file (.csv) contains data relating to the publication Bukovac et al. 2017 J Comp Physiol A.
DOI: 10.6084/m9.figshare.4796638
title: Supporting Information: The mediating role of rumination in the relation between attentional bias towards thin female bodies and eating disorder symptomatology

description: This is the data set as supporting information, provided as .sav file. Further information is available on request.
DOI: 10.6084/m9.figshare.4796734.v1
title: Identification and detoxification of glycolaldehyde, an unattended bioethanol fermentation inhibitor

description: Although there have been approximately 60 chemical compounds identified as potent fermentation inhibitors in lignocellulose hydrolysate, our research group recently discovered glycolaldehyde as a key fermentation inhibitor during second generation biofuel production. Accordingly, we have developed a yeast <i>S. cerevisiae</i> strain exhibiting tolerance to glycolaldehyde. During this glycolaldehyde study, we established novel approaches for rational engineering of inhibitor-tolerant <i>S. cerevisiae</i> strains, including engineering redox cofactors and engineering the SUMOylation pathway. These new technical dimensions provide a novel platform for engineering <i>S. cerevisiae</i> strains to overcome one of the key barriers for industrialization of lignocellulosic ethanol production. As such, this review discusses novel biochemical insight of glycolaldehyde in the context of the biofuel industry.
DOI: 10.6084/m9.figshare.4796569
title: 3D_print_mount_NikonXT225.stl

description: 3D printed mount to fit 5mm diameter tube. Interfaces with Nikon XT 225 CT scanner.
DOI: 10.6084/m9.figshare.4796569.v1
title: 3D_print_mount_NikonXT225.stl

description: 3D printed mount to fit 5mm diameter tube. Interfaces with Nikon XT 225 CT scanner.
DOI: 10.6084/m9.figshare.4796560
title: Sharpe, Varela, Beckstead PLOS One 2017

description: Effects of systemic PD149163 on METH (i.v.) self-administration in mice (DBA2J)
DOI: 10.6084/m9.figshare.4796560.v1
title: Sharpe, Varela, Beckstead PLOS One 2017

description: Effects of systemic PD149163 on METH (i.v.) self-administration in mice (DBA2J)
DOI: 10.6084/m9.figshare.4796548.v1
title: Which types of research are newsworthy? An analysis of UK newspapers citing Web of Science journals

description: Newspapers sometimes write about research that they believe will interest the public. Nevertheless, little is known about the types of research and the academic journals that are covered in the news. In response, ProQuest was searched for citations to 9,639 Science and 3,412 Social Science journals from eight UK daily newspapers during 2006-2015. A small percentage of Science (5.2%) and Social Science (5.7%) journals were cited at least once by the newspapers. About half of the Science journals with at least one newspaper citation covered medial or health-related topics, whereas in the Social Sciences 43% were from <i>Psychiatry/Psychology</i>. These findings confirm the importance of health issues in the news, although <i>Nature</i>, and <i>Science </i>magazines<i> </i>were also highly cited and there were differences between newspapers, with some citing more journals related to political issues. There was no general trend for coverage of science to increase or decrease over time. A content analysis of the citing news stories found that almost all (94%) mentioned Science journals to report research findings. From these, 60% described research extensively and most (53%) used more than one source. There were variations in the extent to which the newspapers reported good or bad news and most news stories had no conclusions about the quality of the reported research. Finally, research from a small number of prestigious British journals (e.g., BMJ journals) were particularly well covered in UK newspapers.
DOI: 10.6084/m9.figshare.4794025
title: Hallmarks of Cancer Gene Set Annotation

description: AACR poster presentation on the strategy to annotate genes to the Hallmarks of Cancer. Text file and a gene set .gmt file of the final annotated gene sets are provided.
DOI: 10.6084/m9.figshare.4794010
title: Acute effects of cinacalcet on arterial stiffness and ventricular function in hemodialysis patients: a randomized double-blinded crossover study.

description: This is the dataset of a study evaluating the acute effects of cinacalcet on arterial stiffness, central pressure wave form and cardiac functions in a group of hemodialysis patients.
DOI: 10.6084/m9.figshare.4793992
title: Malignancies in transplanted patients: Multidisciplinary evaluation and switch to mTOR inhibitors after kidney transplantation – experiences from a prospective, clinical, observational study

description: <b>Background</b> Solid organ transplant recipients are at increased risk of developing malignancies. The objective of this prospective, observational, one-armed study was to study the feasibility to add a mammalian target of rapamycin (mTOR) inhibitor to the immunosuppressive regimen in transplanted patients with post-transplant malignancies. During the trial the need to improve identification of post-transplant malignancies and to reassure adequate oncological treatment of these patients became evident. Multidisciplinary team (MDT) evaluation of oncological and immunosuppressive treatments was implemented for all patients with malignancies after renal or combined renal and pancreas transplantation because of the trial. <b>Material and methods</b> At Uppsala University Hospital, Sweden, a MDT consisting of transplant surgeons, nephrologists, oncologists and dermatologists evaluated 120 renal or combined renal and pancreas-transplanted recipients diagnosed with malignancies from September 2006 to July 2012. To identify all malignancies, the population was linked to the Regional Tumor Registry (RTR). We recorded to which extent a switch to mTOR inhibitors was possible and how often the originally planned oncological managements were adjusted. All patients were followed for three years. (ClinicalTrials.gov: NCT02241564). <b>Results</b> In 76 of 120 patients (63%) a switch to mTOR inhibitors was possible. Immunosuppression was interrupted in seven patients (6%), reduced in three patients (2%) and remained unchanged in 34 of 120 patients (28%). Identification of post-transplant malignancies increased significantly after linkage to RTR (<i>p</i> = 0.015). The initially recommended oncological treatment was adjusted in 23 of 44 patients (52%) with solid or hematological malignancies; 36 of these patients (82%) were treated according to national guidelines. <b>Conclusion</b> In two thirds of the patients the immunosuppressive treatment could be changed to an mTOR inhibitor with anti-tumor effects in transplanted patients with post-transplant malignancies. The use of regional tumor registers considerably improved the identification of patients with post-transplant malignancies indicating that post-transplant malignancies might be timely underreported in transplant registers.
DOI: 10.6084/m9.figshare.4796548.v2
title: Which types of research are newsworthy? UK newspapers 2006-2015 citing Web of Science journals

description: This paper introduces a citation-based method to obtain updated and extended information about news coverage of research. ProQuest was used to search for citations to 9,639 Science and 3,412 Social Science journals from eight UK daily newspapers during 2006-2015. Most Science (95%) and Social Science (94%) journals were never cited by these newspapers. Half of the cited Science journals covered medical or health-related topics, whereas 43% of the Social Sciences journals were related to psychiatry or psychology. There was no general trend for news coverage to increase or decrease over time. A content analysis of the citing news stories found that 94% mentioned journals to report research findings. From these, 60% described research extensively and 53% used more than one source. There were variations in the extent to which newspapers reported good or bad news and most news stories had no comments about the quality of the reported research. Finally, a small number of prestigious British journals were cited particularly often. In conclusion, whilst it is challenging to attract press coverage for non-health research, it is less difficult than previously thought for the social sciences and researchers should be encouraged to promote health-related studies and those in prestigious journals. <br>
DOI: 10.6084/m9.figshare.4794010.v1
title: Acute effects of cinacalcet on arterial stiffness and ventricular function in hemodialysis patients: a randomized double-blinded crossover study.

description: This is the dataset of a study evaluating the acute effects of cinacalcet on arterial stiffness, central pressure wave form and cardiac functions in a group of hemodialysis patients.