cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13734717
title: Top-k comparison between spatial regions with respect to species occurrence

description: Abstract

Indicative species allow in their abundance the classification of biotopes, a spatially limited area with adapted species. However, because species interact between biotopes, it is also interesting to group biotopes together that are functionally or spatially related to each other, called biotop complexes, leading to implications for nature conservation measures. The classification of biotop complexes poses some challenges, as appropriate methods are still lacking. Building on existing studies from Edler et al. 2016 and Pang et al. 2023 this study presents a new framework that supports the objective identification of indicative species in biotop complexes and enables the searchability of biotop complexes using a localized search engine. This novel approach of using a search engine allows for a finer granularity of resolution, as biotop complexes were not sorted into rigid classes, but individually compared to each other based on a similar indicator species composition, which allow a more precise adaption of nature conservation measures. As a proof of concept, this thesis therefore attempts to answer the question whether biotop complexes with a similar indicator species composition produce similar indicative species in the framework. To support this study, an example dataset was created based on biotop locations in the National Park Kellerwald-Edersee and plant species records from Becker, Frede, and Lehmann 1996 of the national park area. For the implementation, the national park area was divided into cells and in each cell the indicative species were grouped and determined by an indicator species analysis. The indicative species were stored in the search engine and thus allowed the search of cells and therefore biotop complexes by their indicative species. The results showed that the predictions of indicative species by the framework depended on the cell size, as the cell size affected properties such as the biotopes intersecting with the cell or the number of plant species found by the framework. The number of biotop complexes with similar biotop compositions, as well as the similarity of their framework predicted indicative species, also depended on the cell size, while the overall similarity of the indicative species in these biotop complexes tended to be low. Additionally as the creation of the example dataset and the determination of the indicative species show a huge influence on the predictive capabilities of the framework, this thesis offers connection possibilities for future research. This thesis provides a solid foundation upon which future research can be built. The next steps to optimize the various customization options provided by the framework and to determine the optimal cell size to increase the significance of the framework's predictions allowing the framework to support future nature conservation management.
DOI: 10.5281/zenodo.13734718
title: Top-k comparison between spatial regions with respect to species occurrence

description: Abstract

Indicative species allow in their abundance the classification of biotopes, a spatially limited area with adapted species. However, because species interact between biotopes, it is also interesting to group biotopes together that are functionally or spatially related to each other, called biotop complexes, leading to implications for nature conservation measures. The classification of biotop complexes poses some challenges, as appropriate methods are still lacking. Building on existing studies from Edler et al. 2016 and Pang et al. 2023 this study presents a new framework that supports the objective identification of indicative species in biotop complexes and enables the searchability of biotop complexes using a localized search engine. This novel approach of using a search engine allows for a finer granularity of resolution, as biotop complexes were not sorted into rigid classes, but individually compared to each other based on a similar indicator species composition, which allow a more precise adaption of nature conservation measures. As a proof of concept, this thesis therefore attempts to answer the question whether biotop complexes with a similar indicator species composition produce similar indicative species in the framework. To support this study, an example dataset was created based on biotop locations in the National Park Kellerwald-Edersee and plant species records from Becker, Frede, and Lehmann 1996 of the national park area. For the implementation, the national park area was divided into cells and in each cell the indicative species were grouped and determined by an indicator species analysis. The indicative species were stored in the search engine and thus allowed the search of cells and therefore biotop complexes by their indicative species. The results showed that the predictions of indicative species by the framework depended on the cell size, as the cell size affected properties such as the biotopes intersecting with the cell or the number of plant species found by the framework. The number of biotop complexes with similar biotop compositions, as well as the similarity of their framework predicted indicative species, also depended on the cell size, while the overall similarity of the indicative species in these biotop complexes tended to be low. Additionally as the creation of the example dataset and the determination of the indicative species show a huge influence on the predictive capabilities of the framework, this thesis offers connection possibilities for future research. This thesis provides a solid foundation upon which future research can be built. The next steps to optimize the various customization options provided by the framework and to determine the optimal cell size to increase the significance of the framework's predictions allowing the framework to support future nature conservation management.
DOI: 10.15468/dl.k7cjrm
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Leiocephalus vinculum Cochran, 1928)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 43 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007273-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7m93jf
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Calumma hilleniusi (Brygoo, Blanc & Domergue, 1973))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007274-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.apd4km
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mitophis asbolepis (Thomas, Mcdiarmid & Thompson, 1985))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007275-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8gjz5p
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Uroplatus guentheri Mocquard, 1908)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 30 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007276-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/d55a-8b69
title: Air Quality Dataset for Shillong Region of Northeast India

description: Data Collection Period: Both datasets cover the period from July 1, 2022, to July 31, 2023. This one-year span captures a full cycle of seasonal variations, which are critical for understanding and forecasting air quality trends. Data Characteristics- Temporal Resolution: The data is recorded at 15-minute intervals, offering detailed temporal resolution.- Missing Data: Both datasets contain missing values due to sensor malfunctions or communication issues. These missing values were handled using imputation techniques as part of the preprocessing phase.- Pollutants Measured: The datasets include the following pollutants:  - NO2 (Nitrogen Dioxide)  - O3 (Ozone)  - CO (Carbon Monoxide)  - SO2 (Sulfur Dioxide)  - PM2.5 (Particulate Matter ≤ 2.5 micrometers)  - PM10 (Particulate Matter ≤ 10 micrometers)
DOI: 10.6084/m9.figshare.26968807
title: Fluid/melt partitioning of tin betwen aqueous fluid and granitic melt

description: This data set describes experiments on the partitioning of tin between granitic melts and saline aqueous fluids at 150 MPa and 800 ˚C. Experiments were carried out in rapid-quench cold seal pressure vessels using double capsules to control oxygen fugacity. Fluid/melt partition coefficients were measured by laser-ablation ICP-MS of adjacent fluid inclusions and quenched melt.
DOI: 10.6084/m9.figshare.26968807.v1
title: Fluid/melt partitioning of tin betwen aqueous fluid and granitic melt

description: This data set describes experiments on the partitioning of tin between granitic melts and saline aqueous fluids at 150 MPa and 800 ˚C. Experiments were carried out in rapid-quench cold seal pressure vessels using double capsules to control oxygen fugacity. Fluid/melt partition coefficients were measured by laser-ablation ICP-MS of adjacent fluid inclusions and quenched melt.
DOI: 10.15468/dl.gj3u3a
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mitophis calypso (Thomas, Mcdiarmid & Thompson, 1985))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007277-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y8ccux
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Paroedura tanjaka Nussbaum & Raxworthy, 2000)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007278-240906103802322/datasets/export for details.
DOI: 10.5517/ccdc.csd.cc2dgpq9
title: CCDC 2218661: Experimental Crystal Structure Determination

description: Related Article: Wenjie Xie, Yongjiang Liu, Mi Zhou, Ping Yin, Siping Pang|2024|Chem.Eng.Journal|488|150974|doi:10.1016/j.cej.2024.150974
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fvwz5
title: CCDC 2260178: Experimental Crystal Structure Determination

description: Related Article: Wenjie Xie, Yongjiang Liu, Mi Zhou, Ping Yin, Siping Pang|2024|Chem.Eng.Journal|488|150974|doi:10.1016/j.cej.2024.150974
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ghmp9
title: CCDC 2279141: Experimental Crystal Structure Determination

description: Related Article: Wenjie Xie, Yongjiang Liu, Mi Zhou, Ping Yin, Siping Pang|2024|Chem.Eng.Journal|488|150974|doi:10.1016/j.cej.2024.150974
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hzqqy
title: CCDC 2323441: Experimental Crystal Structure Determination

description: Related Article: Wenjie Xie, Yongjiang Liu, Mi Zhou, Ping Yin, Siping Pang|2024|Chem.Eng.Journal|488|150974|doi:10.1016/j.cej.2024.150974
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.wxq9v2
title: Occurrence Download

description: A dataset containing 7950 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ciconia boyciana Swinhoe, 1873"
 ]
}

 The dataset includes 7950 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007279-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wt4db8
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mitophis leptepileptus (Thomas, Mcdiarmid & Thompson, 1985))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 51 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007280-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4uea9f
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phelsuma serraticauda Mertens, 1963)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007281-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13734863
title: Data and code from: Species interactions drive continuous assembly of freshwater communities in stochastic environments

description: Understanding the factors driving the maintenance of long-term biodiversity in changing environments is essential for improving restoration and sustainability strategies in the face of global environmental change. Biodiversity is shaped by both niche and stochastic processes, however the strength of deterministic processes in unpredictable environmental regimes is highly debated. Since communities continuously change over time and space -- species persist, disappear or (re)appear -- understanding the drivers of species gains and losses from communities should inform us about whether niche or stochastic processes dominate community dynamics.Applying a nonparametric causal discovery approach to a 30-year time series containing annual abundances of benthic invertebrates across 66 locations in New Zealand rivers, we found a strong \hl{negative} causal relationship between species gains and losses directly driven by predation indicating that niche processes dominate community dynamics. Despite the unpredictable nature of these system, environmental noise was only indirectly related to species gains and losses through altering life history trait distribution. Using a stochastic birth-death framework, we demonstrate that the negative relationship between species gains and losses can not emerge without strong niche processes. Our results showed that even in systems that are dominated by unpredictable environmental variability, species interactions drive continuous community assembly.
DOI: 10.5281/zenodo.13734864
title: Data and code from: Species interactions drive continuous assembly of freshwater communities in stochastic environments

description: Understanding the factors driving the maintenance of long-term biodiversity in changing environments is essential for improving restoration and sustainability strategies in the face of global environmental change. Biodiversity is shaped by both niche and stochastic processes, however the strength of deterministic processes in unpredictable environmental regimes is highly debated. Since communities continuously change over time and space -- species persist, disappear or (re)appear -- understanding the drivers of species gains and losses from communities should inform us about whether niche or stochastic processes dominate community dynamics.Applying a nonparametric causal discovery approach to a 30-year time series containing annual abundances of benthic invertebrates across 66 locations in New Zealand rivers, we found a strong \hl{negative} causal relationship between species gains and losses directly driven by predation indicating that niche processes dominate community dynamics. Despite the unpredictable nature of these system, environmental noise was only indirectly related to species gains and losses through altering life history trait distribution. Using a stochastic birth-death framework, we demonstrate that the negative relationship between species gains and losses can not emerge without strong niche processes. Our results showed that even in systems that are dominated by unpredictable environmental variability, species interactions drive continuous community assembly.
DOI: 10.15468/dl.fhmaje
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Côte d’Ivoire",
 "TaxonKey is Terminalia ivorensis A.Chev."
 ]
}

 The dataset includes 122 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007282-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ubhuh4
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phyllodactylus hispaniolae Schwartz, 1979)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007283-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5stw4s
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Voeltzkowia yamagishii (Sakata & Hikida, 2003))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007284-240906103802322/datasets/export for details.
DOI: 10.6084/m9.figshare.26299045.v1
title: BPOC data August 2023 Clinical data unstructured

description: The study assessed the outcome of BPOC intervention on dental caries status, knowledge and behaviuors related to caries among adolescents
DOI: 10.15468/dl.2pfbwm
title: Occurrence Download

description: A dataset containing 2974 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salix brachycarpa Nutt."
 ]
}

 The dataset includes 2974 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007285-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jcjjma
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Calumma jejy Raxworthy & Nussbaum, 2006)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007286-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.chekhj
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phyllodactylus sommeri Schwartz, 1979)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007287-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s74pcw
title: Occurrence Download

description: A dataset containing 9175 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Procambarus clarkii (Girard, 1852), Procambarus virginalis Lyko, 2017, Procambarus acutus (Girard, 1852), Faxonius limosus (Rafinesque, 1817), Pacifastacus leniusculus (Dana, 1852), Faxonius virilis (Hagen, 1870), Faxonius immunis (Hagen, 1870), Faxonius juvenilis (Hagen, 1870), Faxonius rusticus (Girard, 1852), Astacus astacus (Linnaeus, 1758), Pontastacus leptodactylus (Eschscholtz, 1823), Cherax destructor Clark, 1936, Cherax quadricarinatus (von Martens, 1868))",
 "Country is one of (Belgium)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 9175 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007288-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.