cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.7kf4ud
title: Occurrence Download

description: A dataset listing the 520 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is University of Amsterdam (NL) - Páramo Vegetation Research, Sumapaz-Bocagrande-Chisaca paramo complex, Colombia"
 ]
}

 The dataset's 520 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037345-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.33cqx7
title: Occurrence Download

description: A dataset listing the 801 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Unknown evidence"
 ]
 },
 "Country is Djibouti",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 801 records were derived from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059629-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qnfi6f
title: Occurrence Download

description: A dataset containing 4986 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Norway",
 "Year 2009-2019",
 "TaxonKey is Crex crex (Linnaeus, 1758)"
 ]
}

 The dataset includes 4986 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012995-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9e4rdf
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-4.20639 40.45303,-3.30002 40.45303,-3.30002 41.16989,-4.20639 41.16989,-4.20639 40.45303))",
 "HasCoordinate is true",
 "TaxonKey is Crepis albida Vill."
 ]
}

 The dataset includes 19 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037372-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n8rye9
title: Occurrence Download

description: A dataset containing 230 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhinolophus thomasi K.Andersen, 1905"
 ]
}

 The dataset includes 230 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051879-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.55t7dk
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Venezuela (Bolivarian Republic of)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Saldidae"
 ]
}

 The dataset includes 86 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0333510-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j8vdyq
title: Occurrence Download

description: A dataset containing 23187 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Odonata",
 {
 "or" : [
 {
 "and" : [
 "Year is 2020",
 "Month is August"
 ]
 },
 {
 "and" : [
 "Year is 2020",
 "Month is September"
 ]
 }
 ]
 }
 ]
}

 The dataset includes 23187 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055942-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m2jvyn
title: Occurrence Download

description: A dataset containing 1909 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Noturus exilis Nelson, 1876"
 ]
}

 The dataset includes 1909 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0333506-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mkuabp
title: Occurrence Download

description: A dataset containing 1183 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Living Specimen"
 ]
 },
 "TaxonKey is Carya illinoiensis (Wangenh.) K.Koch"
 ]
}

 The dataset includes 1183 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002225-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11261614
title: Predicting metal-protein interactions using cofolding methods: Status quo

description: Metals play important roles for  enzyme function and many therapeutically relevant proteins. Despite the fact that the first drugs developed via computer aided drug design were metalloprotein inhibitors, many computational pipelines still discard metalloproteins due to the difficulties of modelling them computationally. New "cofolding" methods such as AlphaFold3 (AF3) and RoseTTAfold-AllAtom (RFAA) promise to improve this issue by being able to dock small molecules in presence of multiple complex cofactors including metals or covalent modifications. Here, we analyze the current status for metal ion prediction using these methods. We find that currently only AF3 provides realistic predictions for metal ions, RFAA in contrast does perform worse than more specialized models such as AllMetal3D in predicting the location of metal ions accurately. We find that AF3 predictions are consistent with expected physico-chemical trends/intuition whereas RFAA often also predicts unrealistic metal ion locations.
DOI: 10.5281/zenodo.11261615
title: Predicting metal-protein interactions using cofolding methods: Status quo

description: Metals play important roles for  enzyme function and many therapeutically relevant proteins. Despite the fact that the first drugs developed via computer aided drug design were metalloprotein inhibitors, many computational pipelines still discard metalloproteins due to the difficulties of modelling them computationally. New "cofolding" methods such as AlphaFold3 (AF3) and RoseTTAfold-AllAtom (RFAA) promise to improve this issue by being able to dock small molecules in presence of multiple complex cofactors including metals or covalent modifications. Here, we analyze the current status for metal ion prediction using these methods. We find that currently only AF3 provides realistic predictions for metal ions, RFAA in contrast does perform worse than more specialized models such as AllMetal3D in predicting the location of metal ions accurately. We find that AF3 predictions are consistent with expected physico-chemical trends/intuition whereas RFAA often also predicts unrealistic metal ion locations.
DOI: 10.15468/dl.bdlgcr
title: Occurrence Download

description: A dataset containing 235809 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "not" : {
 "PublishingCountry" : [
 "is Norway"
 ]
 }
 },
 "Country is Svalbard and Jan Mayen"
 ]
}

 The dataset includes 235809 records from 494 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012985-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hfs5lh
title: Occurrence Download

description: A dataset containing 392 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Saposhnikovia divaricata (Turcz.) Schischk."
 ]
}

 The dataset includes 392 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022665-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mq2n2w
title: Occurrence Download

description: A dataset containing 314 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Pinguicula dertosensis (Cañig.) Mateo & M.B.Crespo"
 ]
}

 The dataset includes 314 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219670-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v6efw7
title: Occurrence Download

description: A dataset containing 2613 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is Mexico",
 "TaxonKey is Persea americana Mill."
 ]
}

 The dataset includes 2613 records from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0153387-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bghbxf
title: Occurrence Download

description: A dataset containing 12214 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euthamia graminifolia (L.) Nutt.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 12214 records from 180 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083612-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.igzy2q
title: Occurrence Download

description: A dataset containing 8737 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tridax procumbens L."
 ]
}

 The dataset includes 8737 records from 303 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012014-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9rndzw
title: Occurrence Download

description: A dataset containing 6666 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nestor notabilis Gould, 1856"
 ]
}

 The dataset includes 6666 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008186-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dknyen
title: Occurrence Download

description: A dataset containing 4014 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-92.09337 32.96458,-63.96974 37.34449,-59.99211 49.53464,-90.59279 49.53464,-92.09337 32.96458))",
 "Geometry POLYGON((102.23632 20.97746,151.10689 22.59111,144.12347 53.91339,99.9311 38.26658,102.23632 20.97746))"
 ]
 },
 "HasGeospatialIssue is false",
 "TaxonKey is Celastrus orbiculatus Thunb.",
 "Year 1000-2010"
 ]
}

 The dataset includes 4014 records from 129 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083611-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b4t9gf
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Croton leptophyllus Müll.Arg."
 ]
}

 The dataset includes 34 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0153388-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pkmgqp
title: Occurrence Download

description: A dataset containing 240 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "Year 2009-2019",
 "TaxonKey is Bactris gasipaes Kunth"
 ]
}

 The dataset includes 240 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012026-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8s64fe
title: Occurrence Download

description: A dataset containing 849 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Abarema abbottii (Rose & Leonard) Barneby & J.W.Grimes, Abarema acreana (J.F.Macbr.) L.Rico, Abarema adenophora (Ducke) Barneby & J.W.Grimes, Abarema alexandri (Urb.) Barneby & J.W.Grimes, Abarema asplenifolia (Griseb.) Barneby & J.W.Grimes, Abarema auriculata (Benth.) Barneby & J.W.Grimes, Abarema barbouriana (Standl.) Barneby & J.W.Grimes, Abarema barnebyana Iganci & M.P.Lima, Abarema brachystachya (DC.) Barneby & J.W.Grimes, Abarema callejasii Barneby & J.W.Grimes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 849 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083598-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8wu97e
title: Occurrence Download

description: A dataset containing 11937 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-106.52344 -58.26329,-20.74219 -58.26329,-20.74219 8.05923,-106.52344 8.05923,-106.52344 -58.26329))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Merganetta armata Gould, 1842"
 ]
}

 The dataset includes 11937 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0268047-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ph9bfu
title: Occurrence Download

description: A dataset containing 135 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dasylirion durangense Trel."
 ]
}

 The dataset includes 135 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0153389-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2svcbv
title: Occurrence Download

description: A dataset containing 12886 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Castor canadensis Kuhl, 1820"
 ]
}

 The dataset includes 12886 records from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003506-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v3kcdc
title: Occurrence Download

description: A dataset containing 344 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Facchinia cherlerioides (Sieber) Dillenb. & Kadereit",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 344 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083623-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t28gyc
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "TaxonKey is Hedychium gardnerianum Sheph. ex Ker Gawl."
 ]
}

 The dataset includes 44 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0275397-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lvqvmb
title: Occurrence Download

description: A dataset containing 2155 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Choeronycteris mexicana Tschudi, 1844"
 ]
}

 The dataset includes 2155 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003512-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2aakwj
title: Occurrence Download

description: A dataset containing 8365 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Moehringia lateriflora (L.) Fenzl",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8365 records from 219 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002485-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gtfs40
title: Occurrence Download

description: A dataset containing 1059 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thamnophis rufipunctatus (Cope, 1875)"
 ]
}

 The dataset includes 1059 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002901-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tq5fjn
title: Occurrence Download

description: A dataset containing 117126 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is New Zealand Freshwater Fish Database"
 ]
}

 The dataset includes 117126 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012063-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wszjq8
title: Occurrence Download

description: A dataset containing 510 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Quercus scytophylla Liebm."
 ]
}

 The dataset includes 510 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012565-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zk22hu
title: Occurrence Download

description: A dataset containing 6815 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Afzelia africana Sm. ex Pers."
 ]
}

 The dataset includes 6815 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003153-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t2wg3k
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium britannicoides P.D.Sell"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023982-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2023-05.2815295/2364913
title: Data for EMSL Project 51287 from May 2023
DOI: 10.15468/dl.jy6szf
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Trachypithecus mauritius (Griffith, 1821)",
 "Year 2000-2024"
 ]
}

 The dataset includes 23 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009096-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rsy2tq
title: Occurrence Download

description: A dataset containing 246 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Algyroides marchi Valverde, 1958"
 ]
}

 The dataset includes 246 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012543-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2023-05.2815094/2364914
title: Data for EMSL Project 51287 from May 2023
DOI: 10.15468/dl.4thw9k
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agapetes nutans Dunn"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019829-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7zmx7t
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Saara hardwickii (Gray, 1827)"
 ]
}

 The dataset includes 91 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0091874-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.khzwlb
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pristimantis sobetes (Lynch, 1980)"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012543-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2023-05.2815044/2364915
title: Data for EMSL Project 51287 from May 2023
DOI: 10.15468/dl.33hwdd
title: Occurrence Download

description: A dataset containing 226537 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anacamptis Rich.",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 226537 records from 1027 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009093-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2023-05.2815239/2364916
title: Data for EMSL Project 51287 from May 2023