cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5055283
title: In vitro protein and starch digestion kinetics of individual chickpea cells: from static to more complex in vitro digestion approaches

description: Attention has been given to more (semi-)dynamic <em>in vitro</em> digestion approaches ascertaining the consequences of dynamic <em>in vivo </em>aspects on <em>in vitro </em>digestion kinetics. As these often come with time and economical constraints, evaluating the consequence of stepwise increasing the complexity of static <em>in vitro </em>approaches using easy-to-handle digestion set-ups has been the center of our interest. Starting from the INFOGEST static <em>in vitro </em>protocol, we studied the influence of static gastric pH <em>versus </em>gradual gastric pH change (pH 6.3 to pH 2.5 in 2 h) on macronutrient digestion in individual cotyledon cells derived from chickpeas. Little effect on small intestinal proteolysis was observed comparing the applied digestion conditions. Contrary, the implementation of a gradual gastric pH change, with and without the addition of salivary α-amylase, altered starch digestion kinetics rates, and extents by 25%. The evaluation of starch and protein digestion, being co-embedded in cotyledon cells, did not only confirm but accounted for the interdependent digestion behavior. The insights generated in this study demonstrate the possibility of using a hypothesis-based approach to introduce dynamic factors to <em>in vitro</em> models while sticking to simple and cost-efficient set-ups. The data used for the graphs in the paper: K. Pälchen, D. Michels, D. Duijsens, S. T. Gwala, A. K. Pallares Pallares, M. Hendrickx, A. Van Loey and T. Grauwet, Food Funct., 2021, DOI: 10.1039/D1FO01123E
DOI: 10.6084/m9.figshare.14788881
title: Scripts used for data analysis and visualization

description: Scripts and software output used in "Genome-wide association study reveals putative bacterial risk factors for cavitary Mycobacterium avium complex lung disease" by Hirokazu Yano, Yukiko Nishiuchi, Kentaro Arikawa, Atsushi Ota, Mari Miki, Fumito Maruyama, Hiroshi Kida, Seigo Kitada, Tomotada Iwamoto<br>
DOI: 10.25910/vdvx-9k36
title: Australian Piano Music 1850-1950. Sample Recordings
DOI: 10.34740/kaggle/dsv/2387922
title: Dutch News Articles
DOI: 10.6084/m9.figshare.14805693.v2
title: Speedtest broadband performance by AUS Federal Electorate

description: This dataset analyses Speedtest Open Data by Australian Federal Electorate. Original dataset was Q1, 2020. Now updated (v.3) with Q1, 2021.<br>Analysis of GPS coordinates to Federal Electorate, thanks to E Helderop.<br>Jupyter analysis by Ferrers.<br>NB: There are a number of locations that don't match to an electorate. This is about 5% of the data. For 2020, 4195 rows (from total 87k rows). For 2021, 3875 rows (from total 79k rows). Rows are described in missingElectorate.csv file.See link to Google Map, showing missing Electorate points - they look like they are all in the water.<br>Changelog:v2. Upload missingElectorate.csv file.v1.4. Added graph for 2021 analysis, overall uplift, plus analysis by Regional Type. (v1.2 ipynb)v1.3. Added data for Q1-2021. Source: Helderop.v1.2. Added pics by Electorate type; rural/provincial/inner-outerUrban (source: AEC link below), added four sample electorates comparison graph - like four cities comparison. Added updated Jupyter v1.1.v1 Initial load, data, pics and jupyter.<br>Speedtest data is CC-BY-NC-SA, so this derived dataset is too. (Link below)<br>
DOI: 10.6084/m9.figshare.14898869
title: Complete raw dataset from The sex with the reduced sex chromosome dies earlier: a comparison across the tree of life

description: Complete raw dataset
DOI: 10.6084/m9.figshare.14898869.v1
title: Complete raw dataset from The sex with the reduced sex chromosome dies earlier: a comparison across the tree of life

description: Complete raw dataset
DOI: 10.6084/m9.figshare.14898822
title: GWAS summary statistics from bone traits in commercial layer hens in two different housing systems

description: Summary statistics from genome-wide associations of bone traits in commercial crossbred laying hens in two different housing systems (furnished cages and floor pens).<br>Each row represents the summary statistic from a marker, with trait, chromosome, position, marker ID, estimate, likelihood ratio test statistic, p-value and whether it derives from the cage or pen environment.<br>For details see preprint: https://doi.org/10.1101/2021.06.21.449243
DOI: 10.6084/m9.figshare.14898822.v1
title: GWAS summary statistics from bone traits in commercial layer hens in two different housing systems

description: Summary statistics from genome-wide associations of bone traits in commercial crossbred laying hens in two different housing systems (furnished cages and floor pens).<br>Each row represents the summary statistic from a marker, with trait, chromosome, position, marker ID, estimate, likelihood ratio test statistic, p-value and whether it derives from the cage or pen environment.<br>For details see preprint: https://doi.org/10.1101/2021.06.21.449243
DOI: 10.6084/m9.figshare.14805693.v3
title: Speedtest broadband performance by AUS Federal Electorate

description: This dataset analyses Speedtest Open Data by Australian Federal Electorate. Original dataset was Q1, 2020. Now updated (v.3) with Q1, 2021.<br>Analysis of GPS coordinates to Federal Electorate, thanks to E Helderop.<br>Jupyter analysis by Ferrers.<br>NB: There are a number of locations that don't match to an electorate. This is about 5% of the data. For 2020, 4195 rows (from total 87k rows). For 2021, 3875 rows (from total 79k rows). Rows are described in missingElectorate.csv file.See link to Google Map, showing missing Electorate points - they look like they are all in the water.<br>Errata: noted missing data, when lowercase letters in electorate name, did not match with Electorate file eg Eden-Monaro, McPherson, McEwen, McMahon, O'Connor. Reload csv files updated with revised capitalisation. <br>Changelog:v3. Upload csv with capitals added per Errata. Affects about 4000 rows, approx 5% of file. Revise Regional Type 21 image v2.v2. Upload missingElectorate.csv file.v1.4. Added graph for 2021 analysis, overall uplift, plus analysis by Regional Type. (v1.2 ipynb)v1.3. Added data for Q1-2021. Source: Helderop.v1.2. Added pics by Electorate type; rural/provincial/inner-outerUrban (source: AEC link below), added four sample electorates comparison graph - like four cities comparison. Added updated Jupyter v1.1.v1 Initial load, data, pics and jupyter.<br>Speedtest data is CC-BY-NC-SA, so this derived dataset is too. (Link below)<br>
DOI: 10.5281/zenodo.5059841
title: Skin eruptions in acute hemorrhagic edema of young children: systematic review of the literature

description: <strong>Background:</strong> Acute hemorrhagic edema is a skin limited small-vessel leukocytoclastic vasculitis, which affects infants 4 weeks to 2 years of age and remits within 3 weeks. The diagnosis is made clinically in not-ill appearing children with acute onset of raised annular or nummular eruptions and edema. In this vasculitis, type, distribution and evolution of the rash have never been systemically investigated. To address this issue, we employed the data contained in the Acute Hemorrhagic Edema Bibliographic Database, which incorporates all reports on acute hemorrhagic edema. <strong>Summary:</strong> Key features of rash were documented in 383 children. Annular eruptions in strict sense, usually targetoid, were reported in 375 (98%) cases (many children also presented polycyclic or arciform eruptions). Nummular eruptions were also very common (N=358; 93%). Purpuric eruptions and ecchymoses were reported in the vast majority of cases. Macules and wheals were described in a minority of cases. Edema, detected in all cases, was mostly painful, indurated and non-pitting. Following regions were affected, in decreasing order, by annular or nummular eruptions: legs, feet, face, arms, ears, trunk, and genitals. With the exception of feet, which were very often affected, the same distribution was reported for edema. The initial eruption was often a wheal or a macule that evolved into a nummular or an annular eruption. Nummular eruptions successively evolved into annular ones<strong>. Key message</strong>: this study carefully characterizes type, distribution and evolution of skin eruption in acute hemorrhagic edema. The data help physicians to rapidly and noninvasively make the clinical diagnosis of this vasculitis.
DOI: 10.5281/zenodo.5059840
title: Skin eruptions in acute hemorrhagic edema of young children: systematic review of the literature

description: <strong>Background:</strong> Acute hemorrhagic edema is a skin limited small-vessel leukocytoclastic vasculitis, which affects infants 4 weeks to 2 years of age and remits within 3 weeks. The diagnosis is made clinically in not-ill appearing children with acute onset of raised annular or nummular eruptions and edema. In this vasculitis, type, distribution and evolution of the rash have never been systemically investigated. To address this issue, we employed the data contained in the Acute Hemorrhagic Edema Bibliographic Database, which incorporates all reports on acute hemorrhagic edema. <strong>Summary:</strong> Key features of rash were documented in 383 children. Annular eruptions in strict sense, usually targetoid, were reported in 375 (98%) cases (many children also presented polycyclic or arciform eruptions). Nummular eruptions were also very common (N=358; 93%). Purpuric eruptions and ecchymoses were reported in the vast majority of cases. Macules and wheals were described in a minority of cases. Edema, detected in all cases, was mostly painful, indurated and non-pitting. Following regions were affected, in decreasing order, by annular or nummular eruptions: legs, feet, face, arms, ears, trunk, and genitals. With the exception of feet, which were very often affected, the same distribution was reported for edema. The initial eruption was often a wheal or a macule that evolved into a nummular or an annular eruption. Nummular eruptions successively evolved into annular ones<strong>. Key message</strong>: this study carefully characterizes type, distribution and evolution of skin eruption in acute hemorrhagic edema. The data help physicians to rapidly and noninvasively make the clinical diagnosis of this vasculitis.
DOI: 10.5281/zenodo.5052691
title: Molecular Dynamics Simulation of SARS-CoV-2 Spike Protein

description: Trajectory data corresponding to the manuscript, tentatively titled "Distant Residues Modulate the Conformational Opening in SARS-CoV-2 Spike Protein" Authors: Dhiman Ray, Ly Le, Ioan Andricioaei Affiliation: University of California Irvine, USA Description: Multiple unbiased simulations of 40 ns were performed for the SARS-CoV-2 spike protein. Frames are saved at 50 ps interval. The initial structures were generated from umbrella sampling simulation starting from PDB ID: 6VSB and 6VXX. The index at the end of filename stands for the umbrella sampling window from which the trajectory was initiated. The indices are not continuous as not all the umbrella sampling windows were used to start trajectories. Additionally 3 trajectories, each of length 80 ns, are included for the closed, partially open and fully open state. The topology is provided as a PDB file ("spike_dry.pdb"). The trajectories are for the spike head only structure obtained from the CHARMM-GUI Covid-19 archive. No solvent or ions are included in the trajectory or the topology. Update: Additional trajectories and PDB files for D614G mutant added. Each trajectory is 40 ns long. The PDB files are named 6VXX_mutant_dry.pdb and 6VSB_mutant_dry.pdb for the closed and partially open state. Pre-print available: https://doi.org/10.1101/2020.12.07.415596
description: Grants: NSF (USA) MCB 2028443, NSF (USA) OAC-1547580
DOI: 10.5281/zenodo.4310268
title: Molecular Dynamics Simulation of SARS-CoV-2 Spike Protein

description: Trajectory data corresponding to the manuscript, tentatively titled "Distant Residues Modulate the Conformational Opening in SARS-CoV-2 Spike Protein" Authors: Dhiman Ray, Ly Le, Ioan Andricioaei Affiliation: University of California Irvine, USA Description: Multiple unbiased simulations of 40 ns were performed for the SARS-CoV-2 spike protein. Frames are saved at 50 ps interval. The initial structures were generated from umbrella sampling simulation starting from PDB ID: 6VSB and 6VXX. The index at the end of filename stands for the umbrella sampling window from which the trajectory was initiated. The indices are not continuous as not all the umbrella sampling windows were used to start trajectories. Additionally 3 trajectories, each of length 80 ns, are included for the closed, partially open and fully open state. The topology is provided as a PDB file ("spike_dry.pdb"). The trajectories are for the spike head only structure obtained from the CHARMM-GUI Covid-19 archive. No solvent or ions are included in the trajectory or the topology. Update: Additional trajectories and PDB files for D614G mutant added. Each trajectory is 40 ns long. The PDB files are named 6VXX_mutant_dry.pdb and 6VSB_mutant_dry.pdb for the closed and partially open state. Pre-print available: https://doi.org/10.1101/2020.12.07.415596
description: Grants: NSF (USA) MCB 2028443, NSF (USA) OAC-1547580
DOI: 10.6084/m9.figshare.14898921
title: Supplementary Material for: The Effect of Different Administration Time and Dosage of Vitamin D Supplementation in Patients with Multiple Sclerosis: A Meta-Analysis of Randomized Controlled Trials

description: <b><i>Background:</i></b> Despite the vitamin D treatment in patients with multiple sclerosis (MS), there continues to be controversial discrepancy in outcomes according to the current research. Many systematic reviews have evaluated the effect of vitamin D as an adjuvant treatment in patients with MS; however, there is no consensus on the optimum administration time and dosage of vitamin D intake. A meta-analysis for exploring the different administration time and dosage of vitamin D is warranted. <b><i>Methods:</i></b> Randomized controlled trials (RCTs) on the effect of different administration time and dosage of vitamin D in patients with MS were recorded within 7 databases. This meta-analysis was performed with 2 clinical outcomes: EDSS (Expanded Disability Status Scale) and relapses during research. <b><i>Results:</i></b> The pooled results indicated that receiving different administration time and dosage of vitamin D as an adjuvant treatment had no significant therapeutic effect on MS according to the EDSS scores and relapses during research. <b><i>Conclusion:</i></b> According to our meta-analysis, the administration of vitamin D in different dosages (ranging from 2,857 to 14,007 IU/day) and treatment period (ranging from 6 to 24 months) did not affect the clinical outcomes (EDSS and relapses during research) in patients with MS. Additional RCTs should be conducted to explore whether a longer duration and a larger dosage of vitamin D without serious adverse effects might produce therapeutic effects in patients with MS.
DOI: 10.5517/ccdc.csd.cc1pn90n
title: CCDC 1568631: Experimental Crystal Structure Determination

description: Related Article: SHANKAR MANI|2017|CSD Communication|||
description: Related Article: M. Shankar, K. Thirupugalmani, K. Nehru, S. Athimoolam, V. Tamilmani, Potheher I. Vetha|2021|J.Mol.Struct.|1243|130905|doi:10.1016/j.molstruc.2021.130905
DOI: 10.5517/ccdc.csd.cc2154v7
title: CCDC 1881788: Experimental Crystal Structure Determination

description: Related Article: Qing-Dong Wang, Ya-Wen Wang, Ting Xie, Yan-Ying Cui, Mengtao Ma, Zhi-Liang Shen, Xue-Qiang Chu|2021|J.Org.Chem.|86|8236|doi:10.1021/acs.joc.1c00695
DOI: 10.5517/ccdc.csd.cc23v7rz
title: CCDC 1961641: Experimental Crystal Structure Determination

description: Related Article: Jinsong Chai, Sha Yang, Tao Chen, Qinzhen Li, Shuxin Wang, Manzhou Zhu|2021|Inorg.Chem.|60|9050|doi:10.1021/acs.inorgchem.1c01049
DOI: 10.5517/ccdc.csd.cc23t144
title: CCDC 1960475: Experimental Crystal Structure Determination

description: Related Article: Jinsong Chai, Sha Yang, Tao Chen, Qinzhen Li, Shuxin Wang, Manzhou Zhu|2021|Inorg.Chem.|60|9050|doi:10.1021/acs.inorgchem.1c01049
DOI: 10.5517/ccdc.csd.cc25dyk3
title: CCDC 2008445: Experimental Crystal Structure Determination

description: Related Article: Qing-Dong Wang, Ya-Wen Wang, Ting Xie, Yan-Ying Cui, Mengtao Ma, Zhi-Liang Shen, Xue-Qiang Chu|2021|J.Org.Chem.|86|8236|doi:10.1021/acs.joc.1c00695
DOI: 10.5517/ccdc.csd.cc25g0j6
title: CCDC 2009467: Experimental Crystal Structure Determination

description: Related Article: Zhao Wei, Wei Sun, Pingshan Wang, Die Liu, Haisheng Han|2021|Chem.Eng.Journal|426|130853|doi:10.1016/j.cej.2021.130853
DOI: 10.5517/ccdc.csd.cc25mwvk
title: CCDC 2015119: Experimental Crystal Structure Determination

description: Related Article: Ofelia Hernández-Negrete, Rogerio R. Sotelo-Mundo, Hilda E. Esparza-Ponce, Javier Hernández-Paredes|2021|J.Mol.Struct.|1243|130911|doi:10.1016/j.molstruc.2021.130911
DOI: 10.5517/ccdc.csd.cc25xmtk
title: CCDC 2023519: Experimental Crystal Structure Determination

description: Related Article: Reike Clauss, Aleksandr Kazimir, Axel Straube, Evamarie Hey-Hawkins|2021|Inorg.Chem.|60|8722|doi:10.1021/acs.inorgchem.1c00694
DOI: 10.5517/ccdc.csd.cc2615r6
title: CCDC 2026927: Experimental Crystal Structure Determination

description: Related Article: Reike Clauss, Aleksandr Kazimir, Axel Straube, Evamarie Hey-Hawkins|2021|Inorg.Chem.|60|8722|doi:10.1021/acs.inorgchem.1c00694
DOI: 10.5517/ccdc.csd.cc2615v9
title: CCDC 2026930: Experimental Crystal Structure Determination

description: Related Article: Reike Clauss, Aleksandr Kazimir, Axel Straube, Evamarie Hey-Hawkins|2021|Inorg.Chem.|60|8722|doi:10.1021/acs.inorgchem.1c00694
DOI: 10.5517/ccdc.csd.cc2615xc
title: CCDC 2026932: Experimental Crystal Structure Determination

description: Related Article: Reike Clauss, Aleksandr Kazimir, Axel Straube, Evamarie Hey-Hawkins|2021|Inorg.Chem.|60|8722|doi:10.1021/acs.inorgchem.1c00694
DOI: 10.5517/ccdc.csd.cc2615zf
title: CCDC 2026934: Experimental Crystal Structure Determination

description: Related Article: Reike Clauss, Aleksandr Kazimir, Axel Straube, Evamarie Hey-Hawkins|2021|Inorg.Chem.|60|8722|doi:10.1021/acs.inorgchem.1c00694
DOI: 10.5517/ccdc.csd.cc2616n4
title: CCDC 2026955: Experimental Crystal Structure Determination

description: Related Article: Reike Clauss, Aleksandr Kazimir, Axel Straube, Evamarie Hey-Hawkins|2021|Inorg.Chem.|60|8722|doi:10.1021/acs.inorgchem.1c00694
DOI: 10.5517/ccdc.csd.cc26w4gq
title: CCDC 2051873: Experimental Crystal Structure Determination

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DOI: 10.5517/ccdc.csd.cc26wrf9
title: CCDC 2052461: Experimental Crystal Structure Determination

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DOI: 10.6084/m9.figshare.14837838
title: CmaxVideoAnalysis_2019_dutycycled_MW.xlsx

description: Towed cameras were programmed to record video data at 1080p resolution at 50 frames per second until either the memory or power were exhausted. Video recording was continuous in 2018, but a duty cycle of 30 seconds of recording every 5 minutes was used in 2019 to extend the recording duration. The 2018 continuous video data were therefore sub-sampled to 30-second video sequences every 5 minutes to match the duty cycling used in 2019. We also compared habitat use and behaviours revealed using the duty-cycled video with the continuous video data (collected in 2018), to understand what may have been missed in the duty-cycled data.<br>All video data were observed in VLC Media Player (Version 3.0.8). Initial assessment of all data was undertaken by viewing each 30-second video file at twice the native speed to ascertain information on the following: (i) ambient lighting conditions (more than 50% of video data gathered in dark conditions, termed ‘blackout’, separated into day and night) and (ii) seabed presence and habitat type (whether seabed was visible in more than 50% of data and dominant habitat type). Seabed habitats were classified following the European Nature Information System (EUNIS; https://eunis.eea.europa.eu) habitat classification system, and also included surface and mid-water swimming where neither the seabed nor surface were visible. The frequency and extent of other behaviours, including feeding behaviour (when the shark’s mouths was open for more than 50% of the video duration, i.e. &gt;15 seconds), presence of conspecifics and other species were recorded, and species were identified to the finest possible taxonomic level. Where necessary, video data were watched at native or slowed to half speed to ascertain behaviour changes or other events.<br><br>To investigate the initial responses of basking sharks to tagging, Tail Beat Frequency (TBF) was calculated as the number of lateral undulatory movements visible in the video data. Using data collected in 2018, where video recording was continuous, TBF was estimated every minute (using 30 second of data), and every five minutes for the 2019 duty cycled data for the first 30 minutes following tagging. TBF was also estimated for each 30-second video sequence of surface feeding behaviour
DOI: 10.6084/m9.figshare.14837838.v1
title: CmaxVideoAnalysis_2019_dutycycled_MW.xlsx

description: Towed cameras were programmed to record video data at 1080p resolution at 50 frames per second until either the memory or power were exhausted. Video recording was continuous in 2018, but a duty cycle of 30 seconds of recording every 5 minutes was used in 2019 to extend the recording duration. The 2018 continuous video data were therefore sub-sampled to 30-second video sequences every 5 minutes to match the duty cycling used in 2019. We also compared habitat use and behaviours revealed using the duty-cycled video with the continuous video data (collected in 2018), to understand what may have been missed in the duty-cycled data.<br>All video data were observed in VLC Media Player (Version 3.0.8). Initial assessment of all data was undertaken by viewing each 30-second video file at twice the native speed to ascertain information on the following: (i) ambient lighting conditions (more than 50% of video data gathered in dark conditions, termed ‘blackout’, separated into day and night) and (ii) seabed presence and habitat type (whether seabed was visible in more than 50% of data and dominant habitat type). Seabed habitats were classified following the European Nature Information System (EUNIS; https://eunis.eea.europa.eu) habitat classification system, and also included surface and mid-water swimming where neither the seabed nor surface were visible. The frequency and extent of other behaviours, including feeding behaviour (when the shark’s mouths was open for more than 50% of the video duration, i.e. &gt;15 seconds), presence of conspecifics and other species were recorded, and species were identified to the finest possible taxonomic level. Where necessary, video data were watched at native or slowed to half speed to ascertain behaviour changes or other events.<br><br>To investigate the initial responses of basking sharks to tagging, Tail Beat Frequency (TBF) was calculated as the number of lateral undulatory movements visible in the video data. Using data collected in 2018, where video recording was continuous, TBF was estimated every minute (using 30 second of data), and every five minutes for the 2019 duty cycled data for the first 30 minutes following tagging. TBF was also estimated for each 30-second video sequence of surface feeding behaviour