cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/gzkjj-34h17
title: YB5017

description: Unfinished
description: <strong>Tilt Series Date:</strong> 2007-05-14</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 183.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2007-05-14-3/rawdata/</p>YB50175140760w1d54000cts12u002.mrc,  Tilt Series (Pixel Size 1.2 nm), 688.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.34740/kaggle/dsv/12881637
title: BITCOIN Historical Datasets 2018-2025 Binance API
DOI: 10.22002/fgj3t-21h93
title: FtsZG109S

description: Raw data files of FtsZG109S
description: <strong>Tilt Series Date:</strong> 2007-09-25</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2007-09-25-7/rawdata/</p>FtsZ109926734k12u200e000.mrc,  Tilt Series (Pixel Size 0.644 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/c0bxq-sx557
title: in vitro assembled CA-NC cone

description: data taken by leginon
description: <strong>Tilt Series Date:</strong> 2008-06-12</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> in vitro assembled HIV CA-NC cones</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-70.0°, 70.0°), step: 2°, constant angular increment, dosage: 70.0 eV/Å²,  defocus: 12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2008-06-12-2/rawdata/</p>08jun12a_00008hlh_v02_00002tomo_stack.mrc,  Tilt Series (Pixel Size 0.52 nm), 587.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/cgvy3-qg707
title: in vitro assembled CA-NC cone

description: Raw data files of in vitro assembled CA-NC cone
description: <strong>Tilt Series Date:</strong> 2008-06-30</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> in vitro assembled HIV CA-NC cones</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 66.0°), step: 2°, constant angular increment, dosage: 80.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2008-06-30-4/rawdata/</p>cone080630sam1sq01h05_41k.mrc,  Tilt Series (Pixel Size 0.52 nm), 570.6 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/s5nwz-3v198
title: Ty3 virus like particles

description: Protease mutant
description: <strong>Tilt Series Date:</strong> 2007-11-12</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> Ty3</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 2°, constant angular increment, dosage: 75.0 eV/Å²,  defocus: 8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2007-11-12-4/rawdata/</p>Ty3_071112_sam4_sq09_h01_41k.mrc,  Tilt Series (Pixel Size 0.52 nm), 604.1 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.tqxxzy
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caragana ussuriensis"
 ]
}

 The dataset includes 68 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048503-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/4zc6m-myz43
title: in vitro assembled CA-NC cone

description: data taken by leginon
description: <strong>Tilt Series Date:</strong> 2008-06-12</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> in vitro assembled HIV CA-NC cones</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-70.0°, 70.0°), step: 2°, constant angular increment, dosage: 70.0 eV/Å²,  defocus: 12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2008-06-12-3/rawdata/</p>08jun12a_00007hlh_v02_00002tomo_stack.mrc,  Tilt Series (Pixel Size 0.52 nm), 587.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.unv79n
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Dechacona missionum"
 ]
}

 The dataset includes 48 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048504-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/gfvs4-w3647
title: Caulobacter crescentus

description: Raw data files of Caulobacter crescentus
description: <strong>Tilt Series Date:</strong> 2008-01-20</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-01-20-2/rawdata/</p>mrebgfpbx290x6601dot57255cts12u001a.mrc,  Tilt Series (Pixel Size 1.259 nm), 688.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/v0h1x-r5308
title: FzlC

description: Raw data files of FzlC
description: <strong>Tilt Series Date:</strong> 2008-11-21</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-11-21-15/rawdata/</p>08nov21a_box507_1_015.st,  Tilt Series (Pixel Size 0.644 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.w6f2a6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alburnus macedonicus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-6.6 29.26705, -6.6 50.94, 40.81373 50.94, 40.81373 29.26705, -6.6 29.26705))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048505-250811113504898/datasets/export for details.
DOI: 10.22002/wzqy9-v2z71
title: in vitro assembled CA-NC cone

description: Raw data files of in vitro assembled CA-NC cone
description: <strong>Tilt Series Date:</strong> 2008-06-30</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> in vitro assembled HIV CA-NC cones</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 66.0°), step: 2°, constant angular increment, dosage: 80.0 eV/Å²,  defocus: 12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2008-06-30-5/rawdata/</p>cone080630sam1sq01h07_41k.mrc,  Tilt Series (Pixel Size 0.52 nm), 587.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/f1dwg-7e685
title: Caulobacter crescentus

description: Raw data files of Caulobacter crescentus
description: <strong>Tilt Series Date:</strong> 2008-11-22</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-11-22-6/rawdata/</p>08nov22a_box282_006.st,  Tilt Series (Pixel Size 0.644 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/9saxd-amj95
title: FzlC

description: Raw data files of FzlC
description: <strong>Tilt Series Date:</strong> 2008-11-21</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-11-21-16/rawdata/</p>08nov21a_box507_1_016.st,  Tilt Series (Pixel Size 0.644 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/73na4-afx54
title: in vitro assembled CA-NC cone

description: Raw data files of in vitro assembled CA-NC cone
description: <strong>Tilt Series Date:</strong> 2008-06-30</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> in vitro assembled HIV CA-NC cones</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 66.0°), step: 2°, constant angular increment, dosage: 80.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2008-06-30-6/rawdata/</p>cone080630sam1sq01h09_41k.mrc,  Tilt Series (Pixel Size 0.52 nm), 578.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.88dz4j
title: Occurrence Download

description: A dataset containing 1261 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is Tremarctos ornatus"
 ]
}

 The dataset includes 1261 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048506-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/2a74y-ect79
title: Ty3 virus like particles

description: Protease mutant
description: <strong>Tilt Series Date:</strong> 2007-11-12</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> Ty3</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 2°, constant angular increment, dosage: 140.0 eV/Å²,  defocus: 7.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2007-11-12-10/rawdata/</p>Ty3_071112_sam2_sq01_h01_41k.mrc,  Tilt Series (Pixel Size 0.52 nm), 587.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/xbs74-zbs67
title: Ty3 virus like particles

description: Protease mutant
description: <strong>Tilt Series Date:</strong> 2007-11-12</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> Ty3</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 2°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: 8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2007-11-12-6/rawdata/</p>Ty3_071112_sam2_sq04_h01_50k.mrc,  Tilt Series (Pixel Size 0.52 nm), 595.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.djxc58
title: Occurrence Download

description: A dataset containing 1003 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lobelia erinus",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1003 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048507-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/jek3d-cd271
title: Ty3 virus like particle

description: reverse transcriptase (RT) mutant, elongation less severe than PR mutant and w.t.
description: <strong>Tilt Series Date:</strong> 2008-05-19</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> Ty3</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 2°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: 8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2008-05-19-24/rawdata/</p>Ty3_sam5_sq02_h01_41k.mrc,  Tilt Series (Pixel Size 0.52 nm), 570.6 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.p8vtys
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lobelia erinus",
 "Country is Bosnia and Herzegovina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048508-250811113504898/datasets/export for details.
DOI: 10.22002/02z76-bkv89
title: Pseudomonas_aeruginosa_DfliP

description: This sample was imaged to check for the presence of the tentative flagellar inner-membrane- .  embedded structures in FliP knockout
description: <strong>Tilt Series Date:</strong> 2019-05-25</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -8.0 μm,  magnification: 19500x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> I obtained these cells from Dianne Newman lab from the transposon library (mutant 10239 from . the full library excel file). Shannon Park helped me to get the cells.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were first grown on LB plate with 100 ug/ml gentamicin over night (from -80 C stock). . Next dat, one colony was inoculated in 2 ml of LB (with 100 ug/ml gentamicin) and incubated . for 16 hours at 37 C with 175 rpm. After cells were mixed with gold beads (coated with BSA), . 4 ul were added to the grids, blotted and plunge frozen.</p>
<strong>Sample Preparation:</strong> Different plunge-freezing parameters: 1) blot force 6, blot time 3s, drain time 1s. 2) blot force 3, . blot time 2s, drain time 1s. 3) blot force -5, blot time 4s, drain time 1s. 4) blot force -3, blot time . 2s, drain time 1s. All conditions were at room temperature with 100 % humidity.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2019-05-25-23/rawdata/</p>P_aeruginosa_DfliP15.mrc,  Tilt Series (Pixel Size 0.449 nm), 2.9 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        P_aeruginosa_DfliP15_full.rec,  Reconstruction (Pixel Size 1.796 nm), 737.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        P_aeruginosa_DfliP15.mrc.mdoc,  32.2 kB  
        
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