cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.23641/asha.8233334.v1
title: Retrospective study of early characteristics (Overby et al., 2019)

description: <b>Purpose: </b>Studies of infants’ early vocalizations have proven helpful in describing the developmental characteristics of various communication disorders. However, few studies have addressed the early vocalizations of infants and toddlers who were later diagnosed, as older children, with childhood apraxia of speech (CAS). We refer to these infants and toddlers as <i>LCAS</i>. Extant studies also often lack a comparison group of infants and toddlers who were later diagnosed, as older children, with a speech sound disorder (SSD). We refer to these infants and toddlers as <i>LSSD</i>. We aimed to compare the volubility, consonant emergence, and syllabic structure from birth to age of 2 years, as observed in home videos, among 3 groups of infants and toddlers: LCAS, LSSD, and typically developing (TD).<b>Method:</b> We assessed the speech-language skills of 17 children (3.5–8.8 years old; 7 with CAS, 5 with SSD, and 5 TD) and transcribed home videos (obtained from parents) of these same children from birth to age of 2 years. Early vocalizations were coded as nonresonant or resonant. Nonresonant vocalizations could not be transcribed with the International Phonetic Alphabet. Resonant (speechlike) vocalizations were broadly transcribed, and resonant consonants were categorized by place, manner, and voicing.<b>Results:</b> Effect size comparisons revealed LCAS infants and toddlers were less voluble, used fewer resonant consonants, had a less diverse phonetic repertoire, and acquired resonant consonants later than either the LSSD or TD participants. For LSSD infants and toddlers, means for these dependent variables were lower than the means demonstrated by the TD group, but effect size were not strong due to LSSD variability.<b>Conclusions: </b>Findings imply there might be clinical “red flags” that could assist the identification of infants and toddlers at risk for later diagnosis of CAS. Data did not support red flags for identifying infants and toddlers at risk for later diagnosis of SSD. Because of significant study limitations, results obtained should be considered preliminary.<br><b>Supplemental Material S1.</b> Individual phonetic inventories by month from birth to age 24 months for LCAS participants. <br><b>Supplemental Material S2. </b>Individual phonetic inventories by month from birth to age 24 months for LSSD participants. <br><b>Supplemental Material S3.</b> Individual phonetic inventories by month from birth to age 24 months for TD participants. <br>Overby, M. S., Caspari, S. S., & Schreiber, J. (2019). Volubility, consonant emergence, and syllabic structure in infants and toddlers later diagnosed with childhood apraxia of speech, speech sound disorder, and typical development: A retrospective video analysis. <i>Journal of Speech, Language, and Hearing Research, 62, </i>1657–1675. https://doi.org/10.1044/2019_JSLHR-S-18-0046
DOI: 10.6084/m9.figshare.8233328
title: SURE2018.zip

description: This is location data for three plant species used for MaxEnt analysis
DOI: 10.6084/m9.figshare.8233328.v1
title: SURE2018.zip

description: This is location data for three plant species used for MaxEnt analysis
DOI: 10.6084/m9.figshare.8233175
title: Gene Expression Microarray Public Dataset Reanalysis in Chronic Obstructive Pulmonary Disease

description: Data accompanying manuscript "Gene Expression Microarray Public Dataset Reanalysis in Chronic Obstructive Pulmonary Disease" by L.R.K. Rogers, M. Verlinde and G. Mias
DOI: 10.6084/m9.figshare.8233175.v1
title: Meta-analysis of Gene Expression Microarray Datasets in Chronic Obstructive Pulmonary Disease

description: Data accompanying manuscript "Meta-analysis of Gene Expression Microarray Datasets in Chronic Obstructive Pulmonary Disease" by L.R.K. Rogers, M. Verlinde and G. Mias
DOI: 10.6084/m9.figshare.8233037
title: Co-Citation NET.txt

description: Co-Citation Expatraite <br>
DOI: 10.6084/m9.figshare.8233004
title: Co-Citation MAP.txt

description: Co-citation map of expatriate literature<br>
DOI: 10.6084/m9.figshare.8233004.v1
title: Co-Citation MAP.txt

description: Co-citation map of expatriate literature<br>
DOI: 10.6084/m9.figshare.8233037.v1
title: Co-Citation NET.txt

description: Co-Citation Expatraite <br>
DOI: 10.6084/m9.figshare.8232935
title: Curated Virulence Factor Database

description: This database contains a curated version of the PATRIC VFDB with unique orthologs and proteins directly involved with virulence, excluding chaperones and ABC transporters.
DOI: 10.6084/m9.figshare.8231456
title: Novel protective and risk loci in hip dysplasia in German Shepherds

description: The dataset contains genotype (tped and tfam files) and phenotype data for two GWAS analyses: original (N=293) and meta-analysis (N=525). See README files for more information.
DOI: 10.6084/m9.figshare.8231456.v1
title: Novel protective and risk loci in hip dysplasia in German Shepherds

description: The dataset contains genotype (tped and tfam files) and phenotype data for two GWAS analyses: original (N=293) and meta-analysis (N=525). See README files for more information.
DOI: 10.6084/m9.figshare.8231273
title: WikiRank 05.2019 - quality, popularity and AI for Wikipedia articles

description: This dataset includes a list of over 39 million Wikipedia articles in 55 languages with quality scores by WikiRank (https://wikirank.net). Quality scores of articles are based on Wikipedia dumps from May, 2019. Popularity and Authors' Interest based on activity in April 2019.<br><strong>License</strong><br> All files included in this datasets are released under CC0: https://creativecommons.org/publicdomain/zero/1.0/<br><strong>Format</strong><br>• page_id -- The identifier of the Wikipedia article (int), e.g. <em>4519301</em><br><em><em></em></em><em>• </em>page_name -- The title of the Wikipedia article (utf-8), e.g.<em> General relativity<br></em><em>• </em>wikirank_quality -- quality score for Wikipedia article in a scale 0-100<em> (as of May 1, 2019)<br></em>• poularity -- miedian of daily number of page views of the Wikipedia article during April 2019<em><em><br></em></em>• authors_interest -- number of authors of the Wikipedia article during April 2019<em><em><em><em><br></em></em></em></em>
DOI: 10.6084/m9.figshare.8231240
title: Technical overview of nuclear microsatellites for <i>Fagus</i> sp., and their utility in <i>F. sylvatica</i> from the central Balkans (Serbia)

description: Selectively neutral nuclear microsatellites (SSRs) are available for <i>Fagus</i> sp., and have been used in <i>F. sylvatica</i>, an ecologically and economically most important European <i>Fagus</i> species. We provide a comprehensive technical overview of available <i>Fagus</i> sp. SSRs (185 loci), carry out meta-analysis of loci used in <i>F. sylvatica</i> (62 loci employed in 62 surveys), and validate a set of 16 loci in 45 individuals of this species from the central Balkans (Serbia). Erroneous usage of marker’s names/authors is rather frequent, and loci successfully used in a number of studies are characterized by other authors by high prevalence of null alleles and even multilocus amplification products. Frequent occurrence of null alleles at FS4-46, used in 26 surveys to date, most likely indicates a failure to record multiple alleles at this locus. Twelve loci are reliable/informative in <i>F. sylvatica</i> from the Balkans (5–18 alleles/locus, H<sub>E</sub> ranging from 0.523 to 0.850), while four loci are characterized by high prevalence of null alleles (sfc0161 and sfc1063) and multilocus amplification products (FS4-46 and Fagsyl_007038). Our findings are important for future population genetics and studies on adaptation of <i>F. sylvatica</i> to its environment, because the latter rely on both selectively neutral and adaptive markers under selection.
DOI: 10.6084/m9.figshare.8231273.v1
title: WikiRank 05.2019 - quality scores, popularity and AI for Wikipedia articles

description: This dataset includes a list of over 39 million Wikipedia articles in 55 languages with quality scores by WikiRank (https://wikirank.net). Quality scores of articles are based on Wikipedia dumps from May, 2019. Popularity and Authors' Interest based on activity in April 2019.<br><strong>License</strong><br> All files included in this datasets are released under CC0: https://creativecommons.org/publicdomain/zero/1.0/<br><strong>Format</strong><br>• page_id -- The identifier of the Wikipedia article (int), e.g. <em>4519301</em><br><em><em></em></em><em>• </em>page_name -- The title of the Wikipedia article (utf-8), e.g.<em> General relativity<br></em><em>• </em>wikirank_quality -- quality score for Wikipedia article in a scale 0-100<em> (as of May 1, 2019)<br></em>• poularity -- miedian of daily number of page views of the Wikipedia article during April 2019<em><em><br></em></em>• authors_interest -- number of authors of the Wikipedia article during April 2019<em><em><em><em><br></em></em></em></em>
DOI: 10.6084/m9.figshare.8231240.v1
title: Technical overview of nuclear microsatellites for <i>Fagus</i> sp., and their utility in <i>F. sylvatica</i> from the central Balkans (Serbia)

description: Selectively neutral nuclear microsatellites (SSRs) are available for <i>Fagus</i> sp., and have been used in <i>F. sylvatica</i>, an ecologically and economically most important European <i>Fagus</i> species. We provide a comprehensive technical overview of available <i>Fagus</i> sp. SSRs (185 loci), carry out meta-analysis of loci used in <i>F. sylvatica</i> (62 loci employed in 62 surveys), and validate a set of 16 loci in 45 individuals of this species from the central Balkans (Serbia). Erroneous usage of marker’s names/authors is rather frequent, and loci successfully used in a number of studies are characterized by other authors by high prevalence of null alleles and even multilocus amplification products. Frequent occurrence of null alleles at FS4-46, used in 26 surveys to date, most likely indicates a failure to record multiple alleles at this locus. Twelve loci are reliable/informative in <i>F. sylvatica</i> from the Balkans (5–18 alleles/locus, H<sub>E</sub> ranging from 0.523 to 0.850), while four loci are characterized by high prevalence of null alleles (sfc0161 and sfc1063) and multilocus amplification products (FS4-46 and Fagsyl_007038). Our findings are important for future population genetics and studies on adaptation of <i>F. sylvatica</i> to its environment, because the latter rely on both selectively neutral and adaptive markers under selection.
DOI: 10.6084/m9.figshare.8231105
title: source data for manuscript "Evaluation of pepper mild mottle virus removal by membrane filtration and slow sand filtration processes in full-scale drinking water treatment plants in Japan"

description: Source data for manuscript "Evaluation of pepper mild mottle virus removal by membrane filtration and slow sand filtration processes in full-scale drinking water treatment plants in Japan" by Vu Duc Canh, Hiroaki Furumai, and Hiroyuki Katayama published in the Journal of npj Clean Water.<br>data set contains the raw data to produce table 3 and figure 4
DOI: 10.6084/m9.figshare.8231105.v2
title: source data for manuscript "Evaluation of pepper mild mottle virus removal by membrane filtration and slow sand filtration processes in full-scale drinking water treatment plants in Japan"

description: Source data for manuscript "Evaluation of pepper mild mottle virus removal by membrane filtration and slow sand filtration processes in full-scale drinking water treatment plants in Japan" by Vu Duc Canh, Hiroaki Furumai, and Hiroyuki Katayama published in the Journal of npj Clean Water.<br>data set contains the raw data to produce table 3 and figure 4
DOI: 10.6084/m9.figshare.8231105.v1
title: Dataset.xlsx

description: dataset
DOI: 10.6084/m9.figshare.8231012
title: SI100.xyz

description: xyz file of Single Si 100 unit cell
DOI: 10.6084/m9.figshare.8230949
title: Exploring simulated driving performance among varsity male soccer players

description: <b>Background:</b> It is documented that male athletes display riskier behaviors while driving (as well as in life in general) than female athletes and nonathletes. However, the literature has reported that athletes show better driving ability than nonathletes. This paradox between behaviors and abilities motivated the present study to further understand the collision risk of varsity athletes. <b>Objective:</b> The current study estimates the performance differences between varsity male soccer players and male undergraduate nonathletes on (1) a driving task and (2) three perceptual–cognitive tasks (associated with collision risk prediction; i.e., Useful Field of View [UFOV] test). <b>Methods:</b> Thirty-five male undergraduate students (15 varsity soccer players, 20 undergraduate nonathletes) took part in this study. Driving performance was assessed during 14 min of urban commuting using a driving simulator. While completing the simulated driving task and UFOV test, the physiological responses were monitored using an electrocardiograph (ECG) to document heart rate variability (HRV). <b>Results:</b> Varsity soccer players showed more risky behaviors at the wheel compared to their nonathlete student peers. Varsity soccer players spent more time over the speed limit, committed more driving errors, and adopted fewer safe and legal behaviors. However, no difference was observed between both groups on driving skill variables (i.e., vehicle control, vehicle mobility, ecodriving). For subtests 1 and 2 of the UFOV (i.e., processing speed, divided attention), both groups performed identically (i.e., 17 ms). The nonathlete group tended to perform better on the selective attention task (i.e., subtest 3 of UFOV test; 63.2 ± 6.2 ms vs. 87.2 ± 10.7 ms, respectively; this difference was not significant, <i>P</i> = .76). <b>Conclusion:</b> Preventive driving measures should be enforced in this high-risk population to develop strategies for risk reduction in male team athletes.
DOI: 10.6084/m9.figshare.8230949.v1
title: Exploring simulated driving performance among varsity male soccer players

description: <b>Background:</b> It is documented that male athletes display riskier behaviors while driving (as well as in life in general) than female athletes and nonathletes. However, the literature has reported that athletes show better driving ability than nonathletes. This paradox between behaviors and abilities motivated the present study to further understand the collision risk of varsity athletes. <b>Objective:</b> The current study estimates the performance differences between varsity male soccer players and male undergraduate nonathletes on (1) a driving task and (2) three perceptual–cognitive tasks (associated with collision risk prediction; i.e., Useful Field of View [UFOV] test). <b>Methods:</b> Thirty-five male undergraduate students (15 varsity soccer players, 20 undergraduate nonathletes) took part in this study. Driving performance was assessed during 14 min of urban commuting using a driving simulator. While completing the simulated driving task and UFOV test, the physiological responses were monitored using an electrocardiograph (ECG) to document heart rate variability (HRV). <b>Results:</b> Varsity soccer players showed more risky behaviors at the wheel compared to their nonathlete student peers. Varsity soccer players spent more time over the speed limit, committed more driving errors, and adopted fewer safe and legal behaviors. However, no difference was observed between both groups on driving skill variables (i.e., vehicle control, vehicle mobility, ecodriving). For subtests 1 and 2 of the UFOV (i.e., processing speed, divided attention), both groups performed identically (i.e., 17 ms). The nonathlete group tended to perform better on the selective attention task (i.e., subtest 3 of UFOV test; 63.2 ± 6.2 ms vs. 87.2 ± 10.7 ms, respectively; this difference was not significant, <i>P</i> = .76). <b>Conclusion:</b> Preventive driving measures should be enforced in this high-risk population to develop strategies for risk reduction in male team athletes.
DOI: 10.6084/m9.figshare.8230880
title: Supplementary Material for: Fatigue in Nondialysis Chronic Kidney Disease: Correlates and Association with Kidney Outcomes

description: <b><i>Background:</i></b> Fatigue, although common and associated with outcomes in dialysis-dependent chronic kidney disease (CKD), has not been studied in nondialysis chronic kidney disease (CKD-ND) patients. <b><i>Methods:</i></b> In this longitudinal cohort of 266 outpatients with CKD-ND stages 2–5, we measured self-reported fatigue on 3 scales-Quick Inventory of Depression Symptomatology-Self Report (QIDS-SR<sub>16</sub>), Beck Depression Inventory-I (BDI-I), and short form 12 health survey (SF-12) questionnaires and evaluated the prespecified composite of progression to dialysis initiation, death, or hospitalization after 12 months. Logistic and linear regression assessed characteristics associated with fatigue. Survival analysis measured associations of fatigue with outcomes. <b><i>Results:</i></b> Mean age was 64.4 ± 12.0 years, and mean estimated glomerular filtration rate (eGFR) was 31.6 ± 16.7 mL/min/1.73 m<sup>2</sup>. Fatigue was common, with 69.2% reporting fatigue on QIDS-SR<sub>16</sub> and 77.7% on BDI-I. Unemployment, comorbidities, use of antidepressant medications, and lower hemoglobin correlated with fatigue. There were 126 outcome events. Participants that reported any versus no fatigue on QIDS-SR<sub>16</sub> were more likely to reach the composite, hazard ratio (HR) 1.70 (95% CI 1.11–2.59), which persisted after adjusting for demographics, comorbidities, substance abuse, hemoglobin, albumin, eGFR, and calcium-phosphorus product, HR 1.63 (1.05–2.55). Fatigue severity by the SF-12 was also associated with outcomes independent of demographics, comorbidities, and substance abuse, HR per unit increase 1.18 (1.03–1.35). No association was observed with fatigue on the BDI-I. <b><i>Conclusion:</i></b> Fatigue affected about 2/3 of CKD-ND patients and associated with unemployment, comorbidities, antidepressant medication use, and anemia. Fatigue measured by the QIDS-SR<sub>16</sub> and SF-12 independently predicted outcomes in CKD patients. Eliciting the presence of fatigue may be a clinically significant prognostic assessment in CKD patients.
DOI: 10.6084/m9.figshare.8230877
title: Supplementary Material for: Histological Evidence of Diabetic Kidney Disease Precede Clinical Diagnosis

description: <b><i>Background:</i></b> In the absence of a histological diagnosis, persistent albuminuria is globally accepted as the main diagnostic criteria for diabetic kidney disease (DKD). <b><i>Methods:</i></b> In the present retrospective study, we evaluated data from an Italian cohort of 42 deceased diabetic donors (mainly with type 2 diabetes). Using the kidney biopsies obtained at the time of donation to evaluate single or double allocation based on Karpinski score, we determined the prevalence of histological lesions attributable to diabetes. <b><i>Results:</i></b> All 42 donors presented with proteinuria in the normal range and an estimated glomerular filtration rate (eGFR) (chronic kidney disease [CKD]-EPI) &gt;60 mL/min/1.73 m<sup>2</sup>. A kidney biopsy was available for 36 patients; of these, one was not interpretable and 32 showed histopathological lesions consistent with DKD and encompassing all histological classes. Thus, we found a relatively high proportion of histologically proven DKD that had been clinically undiagnosed, as none of the patient had significant proteinuria and eGFR &lt;60 mL/min/1.73 m<sup>2</sup>. <b><i>Conclusions:</i></b> The data we present here support the need to implement routine kidney biopsies in normoalbuminuric diabetic subjects in the early stages of CKD. Such strategy may help to improve risk stratification in diabetic patients and guide therapeutic decisions during the early stages of the disease.
DOI: 10.6084/m9.figshare.8230877.v1
title: Supplementary Material for: Histological Evidence of Diabetic Kidney Disease Precede Clinical Diagnosis

description: <b><i>Background:</i></b> In the absence of a histological diagnosis, persistent albuminuria is globally accepted as the main diagnostic criteria for diabetic kidney disease (DKD). <b><i>Methods:</i></b> In the present retrospective study, we evaluated data from an Italian cohort of 42 deceased diabetic donors (mainly with type 2 diabetes). Using the kidney biopsies obtained at the time of donation to evaluate single or double allocation based on Karpinski score, we determined the prevalence of histological lesions attributable to diabetes. <b><i>Results:</i></b> All 42 donors presented with proteinuria in the normal range and an estimated glomerular filtration rate (eGFR) (chronic kidney disease [CKD]-EPI) &gt;60 mL/min/1.73 m<sup>2</sup>. A kidney biopsy was available for 36 patients; of these, one was not interpretable and 32 showed histopathological lesions consistent with DKD and encompassing all histological classes. Thus, we found a relatively high proportion of histologically proven DKD that had been clinically undiagnosed, as none of the patient had significant proteinuria and eGFR &lt;60 mL/min/1.73 m<sup>2</sup>. <b><i>Conclusions:</i></b> The data we present here support the need to implement routine kidney biopsies in normoalbuminuric diabetic subjects in the early stages of CKD. Such strategy may help to improve risk stratification in diabetic patients and guide therapeutic decisions during the early stages of the disease.
DOI: 10.6084/m9.figshare.8230874
title: Supplementary Material for: Environmental Factors and the Risk of Brain Tumours in Young People: A Systematic Review

description: <b><i>Background:</i></b> Brain tumours (BT) are one of the most frequent tumour types in young people, although little is known about their risk factors. <b><i>Objective:</i></b> The objective of the current work was to review and summarize the scientific literature concerning exposure to environmental factors and BT risk in young people (&lt;25 years old). <b><i>Methods:</i></b> PUBMED, Embase, Cochrane Library, Scopus, IME-Biomedina (bibliographic database of Consejo Superior de Investigaciones Científicas) and Web of science databases were searched. A score to assess the quality of the methodological information was created. <b><i>Results:</i></b> Some possible associations between BT risk in young people were reported for cadmium, consumption of well water, presence of nitrate or nitrate-nitrogen in tap water, mother’s passive smoking, air pollution, parental handling of pesticides at home and/or professional pesticide treatment within houses, living on a farm and/or with farm animals, some parental occupations and high amount of meat consumption. <b><i>Conclusions:</i></b> Although many of the studies reviewed suggest associations between the environmental exposures and BT in children and young adults, at present no reliable conclusion can be drawn as most results are based on small number of cases and exposure assessment is limited. Large-scale studies with better exposure assessment are needed to shed light on these possible associations, especially on exposure to heavy metals, tab water consumption, pesticides and parental smoking.