cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.rd304/1
title: Tyler_et_al_genemapper_samples

description: Genemapper output for spermathecal and offspring samples from each triad. Female.ID:  A unique ID number given to each female, here used to identify triads.  Sample.type:  For each triad DNA from the spermatheca and offspring were extracted.  These are given as ‘sperm’ or ‘nymph’, respectively.  Plex: Samples were screened with either individual markers or as plexes (details of microsatellite screening conditions are given in the supporting information ‘S2_Suppinfo’).  Dye: The dyes used in the microsatellite screening. Blue (B), Green (G) or Yellow (Y).  Allele1 / Allele2: The unique allele identified for each male in the triad.  Size1 / Size2: Peak height of an allele.  Area1 / Area2: Peak area of an allele.
DOI: 10.5061/dryad.rr65n/4
title: Manual alignments of fragments within the 65KB window for H. erato and H. melpomene

description: This file is provided for visualization of the manual alignments used to extract the SNPs that went into the Bayesian analysis of H. erato and H. melpomene across the 65KB peak of association (515-580KB in H. erato; melperato_manalignSNPsD515to580Bayes_DATATREE.nex). It involves H. melpomene and H. erato aligned fragments from this region (see melperato_alignedfrags_D454to742KB_DATA.nex) that have been concatenated and manually aligned. The file is in nexus format.
DOI: 10.5061/dryad.s1092/12
title: P2.maur

description: Paternity and sperm count data for D. mauritiana. Variables: Block – for maur only, different experimental blocks, A and B; Treat – time after mating for which paternity and sperm numbers in the female reproductive tract were quantified; FirstM – transgenic line of first male by sperm label, GFP or RFP. Second male is automatically the reciprocal label; Remate – day after first mating (day 0) on which female remated; Cop1 – duration in minutes of the first copulation; Cop2 – duration in minutes of the second copulation; PriorProg – number of progeny produced by female before remating; P2.24 – proportion of progeny sired by the second male (P2) for the first 24 hrs after mating; P2.48 – P2 for the first 48 hrs after mating; P2.72 - P2 for the first 72 hrs after mating; P2 – P2 over entire time period; Bursa1 – number of first-male sperm in the bursa; Bursa2 – number of second-male sperm in the bursa; Prox1 – number of first-male sperm in the proximal half of the SR; Prox2 – number of second-male sperm in the proximal half of the SR; Dist1 – number of first-male sperm in the distal half of the SR; Dist1 – number of first-male sperm in the distal half of the SR; Dist2 – number of second-male sperm in the distal half of the SR; Caps1 – number of first-male sperm in the two spermathecal caps combined; Caps2 – number of second-male sperm in the two spermathecal caps combined; Ducts1 – number of first-male sperm in the two spermathecal ducts combined; Ducts2 – number of second-male sperm in the two spermathecal ducts combined; SR1 – number of first-male sperm in the entire SR; SR2 – number of second-male sperm in the entire SR; Sp1 – number of first-male sperm in both spermathecae combined; Sp2 – number of second-male sperm in both spermathecae combined
DOI: 10.5061/dryad.s1092/13
title: P2.mel

description: Paternity and sperm count data for D. melanogaster. Variables: Treat – time after mating for which paternity and sperm numbers in the female reproductive tract were quantified; P2 – P2 over entire time period; SR1 – number of first-male sperm in the entire SR; SR2 – number of second-male sperm in the entire SR; Sp1 – number of first-male sperm in both spermathecae combined; Sp2 – number of second-male sperm in both spermathecae combined
DOI: 10.5061/dryad.s5b62/2
title: ssd critical size
DOI: 10.5061/dryad.s5b62/3
title: growth rate data
DOI: 10.5061/dryad.sb432/7
title: helianthus root architecture

description: data sheet of root architecture measurements
DOI: 10.5061/dryad.v04g2/1
title: fungi_wp2_uniq_mcl

description: Fasta file containing unic sequences. The cluster number corresponds to MOTU number
DOI: 10.5061/dryad.00s51/1
title: Context-dependent male familiarity data

description: This file contains the data for all three experiments in the paper: behaviour under predation threat, competing for food and competing for mates. Each experiment is in a separate tab of an Excel file. Column heading should be clear with reference to the manuscript. All data was collected experimentally using a lab-bred population.
DOI: 10.5061/dryad.01ph1/1
title: GTs_Individual level data_Royle et al_Proc B

description: Individual level data file
DOI: 10.5061/dryad.01ph1/3
title: GTs_Begging_Feeding_Royle et al_Proc B

description: Data file on social network structure, begging behaviour of nestlings in broods and feeding behaviour of parents
DOI: 10.5061/dryad.084g8/8
title: CDS data set - annotated tree
DOI: 10.5061/dryad.14fd6/1
title: All fitness experiments

description: All experiments measuring fitness components on the different PA treatments.
DOI: 10.5061/dryad.14fd6/2
title: PA content

description: PA content in adult moths reared on different PA concentrations
DOI: 10.5061/dryad.14fd6/3
title: qPCR

description: qPCr data on expression of PNO
DOI: 10.5061/dryad.1q88j/15
title: Cover_Shrub_Residual

description: Plot-level values of total (summed) cover over the study period (1979 to 2008) of residual shrub species (see Appendix A for species classification). Column headings are: Plot number (first digit is watershed number, 1 or 3); the remainining columns are sampling dates (1979, 1980, 1983, 1987, 1990, 1994, 1997, 2002, and 2008. Units are % (values can exceed 100%).
DOI: 10.5061/dryad.1q88j/21
title: Richness_Herb_Residual

description: Richness over the study period (1979 to 2008) of residual herbaceous species (see Appendix A for species classification). Column headings are: Plot number (first digit is watershed number, 1 or 3); the remainining columns are sampling dates (1979, 1980, 1983, 1987, 1990, 1994, 1997, 2002, and 2008. Units are number of species/plot.
DOI: 10.5061/dryad.20r9k/15
title: artibeus_reads

description: reads used to assemble Jamaican fruit bat
DOI: 10.5061/dryad.23vp5/2
title: Shorebird_Full_cDNA_Assembly.fasta

description: This file holds all transcript assemblies generated through the trinity package (version 2012-01-25) (Grabherr et al. 2011) in fasta format.
DOI: 10.5061/dryad.23vp5/4
title: Putative_Autosomal_SNP

description: Contains the VCF files for all the putative autosomal SNPs.
DOI: 10.5061/dryad.23vp5/5
title: Putative_Z_SNP

description: Contains the VCF files for all the putative Z-linked SNPs.
DOI: 10.5061/dryad.27q72/11
title: ND1 alignment

description: Alignment of sequence data for ND1 and ND1 flanking regions from all oplurine taxa included in this study.
DOI: 10.5061/dryad.2f1k3/1
title: Anas crecca mtDNA control region sequences.fas

description: FASTA file containing 144 mtDNA control region sequences (987 aligned sites) sampled from Common (Green-winged) Teal (Anas crecca). The first 58 sequences were sampled from Eurasia, and the next 86 sequences were sampled from North America.
DOI: 10.5061/dryad.3066j/2
title: Adaptation in the strong mutation regime

description: Results of simulations in a strong mutation regine (U~s), used for Fig. 3.
DOI: 10.5061/dryad.3066j/3
title: Competitions between mutational strategies

description: Simulations of competitions for Appendix F.
DOI: 10.5061/dryad.3066j/4
title: Adaptation in weak mutation regime restricted to unloaded individuals

description: Results of simulations in a weak mutation regine (U&lt;
DOI: 10.5061/dryad.3066j/5
title: Adaptation in the weak mutation regime with continuous SIM

description: Results of simulations in a weak mutation regine (U&lt;
DOI: 10.5061/dryad.5255n/5
title: Sander_spp_s7_wallout_aln_dryadsub

description: Nuclear s7 intron 1 DNA sequence alignment for all members of the genus Sander and outgroups
DOI: 10.5061/dryad.566n8/7
title: IMa2 input file for P. tabuliformis and P. yunnanensis

description: IMa2 input file used in Pairwise IM analysis for P. tabuliformis and P. yunnanensis
DOI: 10.5061/dryad.5m8p3/1
title: Gryllus veletis Diet Study- Raw Data- Harrison et al (2014)

description: This file contains all raw data for experiments 1-3 for Harrison et al's (2014) study examining the effects of dietary protein, carbohydrates, and phosphorus on field cricket (Gryllus veletis) fitness traits and diet choice.
DOI: 10.5061/dryad.624k0/2
title: Parr sampling data

description: This is field-recorded data of the sex, maturity and measurements of 100 parr. Some parr were too small and could not be sexed in the field. Sampling occurred via electrofishing in collaboration with the Department of Fisheries and Oceans, St. John's, Newfoundland.
DOI: 10.5061/dryad.7137r/18
title: bird1401_pair6_son2_all_songs

description: sound file
DOI: 10.5061/dryad.7m6kg/50
title: Fig. 9c: ROM 59672 – Nectocaris pteryx from the Burgess Shale

description: Dark components of gills have thick edges, suggesting a cylindrical profile
DOI: 10.5061/dryad.8364h/1
title: possum_genotypes
DOI: 10.5061/dryad.8k0m3/1
title: Datasets
DOI: 10.5061/dryad.8k0m3/2
title: Code
DOI: 10.5061/dryad.8sb02/2
title: C code for simulations

description: Created in Xcode. Also includes a parameter file.
DOI: 10.5061/dryad.dr7b7/1
title: Cardoso&Gilbert.data

description: These data refer to experiments described in the material and methods section of the paper. Further details regarding columns headings and codes can de found in the ReadMe file.
DOI: 10.5061/dryad.dt910/1
title: Szucs et al 2014_Data_for_Dryad

description: The three sheets in the file contain all the data used to assess establishment success, population growth, and dispersal rates of the populations described in the methods section of the manuscript.
DOI: 10.5061/dryad.f1c5j/1
title: Complex consequences of herbivory and interplant cues in three annual plants

description: An excel file with comments on columns. The data file has information pertaining to damage, biomass and seedset of plants in the field as well as the results of palatability trials to potted plants.
DOI: 10.5061/dryad.f5t28/1
title: MUSK_aligned

description: FASTA file of aligned MUSK sequences
DOI: 10.5061/dryad.f5t28/2
title: IRF2_aligned

description: FASTA file of aligned IRF2 sequences
DOI: 10.5061/dryad.f5t28/3
title: Myo_aligned

description: FASTA file of aligned Myo2 sequences
DOI: 10.5061/dryad.f5t28/4
title: Cytb_aligned

description: FASTA file of aligned Cyt b sequences
DOI: 10.5061/dryad.f5t28/5
title: wing_chord_cline

description: ClineFit 2.0a input file for wing chord measurements
DOI: 10.5061/dryad.f5t28/6
title: tail_cline

description: ClineFit 2.0a input file for white tail tip measurements
DOI: 10.5061/dryad.f5t28/7
title: mass_cline

description: ClineFit 2.0a input file for mass measurements
DOI: 10.5061/dryad.g216n/4
title: Microsatellite genotypes

description: Genepop format; 000000 - missing data (may inbclude null homozygotes); 999999 - confirmed null homozygotes
DOI: 10.5061/dryad.g40n0/1
title: Data for Taborsky et al. Evolution, Fig. 5
DOI: 10.5061/dryad.h30t5/2
title: tera.gut

description: XML file used in the BEAST analysis to generate a sample of 450 trees.
DOI: 10.5061/dryad.h4070/1
title: Saxafragales_Supermatrix.phy

description: The file "Saxafragales_Supermatrix.phy" contains the full supermatrix data set in phylip format.
DOI: 10.5061/dryad.h9873/2
title: Santini_et_al_2013_115taxa_8genes

description: Pufferfish DNA alignment, Nexus format
DOI: 10.5061/dryad.jj68n/1
title: Quemere_gh_sequence_data

description: This file contains all unique sequences produced by G/H primers and occurring more than once. The sequences have been produced by the Illumina technology (GA IIx platform).
DOI: 10.5061/dryad.k3v35/1
title: WillowGrouse_SNP_data
DOI: 10.5061/dryad.nr353/3
title: README

description: This readme file contains instructions of how to execute the other two scripts and other components necessary for the execution.
DOI: 10.5061/dryad.ns905/1
title: Data from a transplant experiment involving hybridized and non-hybridized populations of brook trout

description: This data file contains field, genetic and morphological data from a transplant experiment in which brook trout from two hybridized (Welcome and Charles Lakes), one non-hybridized (Dickson Lake) and one hatchery population (Hills Lake strain) were match planted into three experimental study lakes. A 5th population (Shallnot Lake) is included in the data but was not included in the publication due to its uncertain genetic background.
DOI: 10.5061/dryad.q8758/2
title: DV_measurements

description: Measurements of dorsal, ventral and total eye areas from D. mauritiana (TAM16), D. simulans (yvf), and D. melanogaster (M36).
DOI: 10.5061/dryad.q8758/3
title: Eye_size_measurements_ext

description: Head, eye, face and wing measurements from extended data set of D. mauritiana and D. simulans strains.
DOI: 10.5061/dryad.r4026/1
title: Colletotrichum_gloeosporioides_Nara_gc5_1_assembly

description: Genome assembly of Colletotrichum gloeosporioides Nara gc5 isolated from strawberry plants. Files include SOAP denovo assembled Colletotrichum gloeosporioides scaffolds and contigs, all predicted proteins and all predicted  transcripts in fasta format.
DOI: 10.5061/dryad.r70n0/1
title: Gingins-Bshary_power-temptation_PROCB2013

description: Results of laboratory experiments involving Labroides dimidiatus and Halichoeres melanurus. Individuals of both species were tested in a foraging experiments designed to be ecologically relevant for Labroides dimidiatus.
DOI: 10.5061/dryad.rr65n/10
title: Likelihood scores for geographic and color-based trees for Heliconius erato across the red pattern interval

description: Sequence data of Heliconius erato across the red color pattern interval and scripts used to obtain scores of the likelihood of two alternative phylogenetic tree topologies (geographic - GEO; color-pattern based - D) explaining the data across 15KB sliding windows. The file includes sequences, trees used to compute likelihood scores, and the script run in PAUP* to calculate the likelihood scores for each tree.
DOI: 10.5061/dryad.rr65n/11
title: Phylogenetic trees from the 15KB sliding window analysis of H. erato along the red pattern interval

description: Distance based neighbor-joining trees across the sliding window derived from Hera_D_15KBsliding njtreesDATA.nex. Trees are ordered by position along the d-interval, staggered every 5KB. The file is in nexus format.
DOI: 10.5061/dryad.rr65n/18
title: Sequence data and Bayesian phylogenetic tree of Heliconius erato from the 65 KB peak of association in the red pattern interval

description: The sequence data and Bayesian consensus tree generated of H. erato from the 65KB region (515 to 580 KB) of highest association in the red pattern interval. The data excludes sites with &gt;20% missing data or that were invariant. This is the same data file as for Splitstree except sites variable only in heterozygotes are removed as these are considered as missing data in the analysis and are effectively constant. The file also includes the Bayes block for running in MrBayes.
DOI: 10.5061/dryad.rr65n/5
title: Sequence alignments from across the red pattern interval of Heliconius erato

description: This nexus file includes all SNP data for each individual of Heliconius erato sequenced across the four hybrid zones aligned against the full red color pattern interval (D interval). Ns represent missing or excluded data from low quality sequence calls.
DOI: 10.5061/dryad.rr65n/6
title: Aligned sequences of Heliconius erato from across the color pattern unlinked BAC including cinnabar

description: This nexus file includes all SNP data for each individual of Heliconius erato sequenced across the four hybrid zones aligned against the color pattern-unlinked BAC region that includes the gene cinnabar. Ns represent missing or excluded data from low quality sequence calls.
DOI: 10.5061/dryad.rr65n/7
title: Aligned sequences of Heliconius erato across the color pattern-unlinked BAC 46F09

description: This nexus file includes all SNP data for each individual of Heliconius erato sequenced across the four hybrid zones aligned against the color pattern-unlinked BAC region 46F09. Ns represent missing or excluded data from low quality sequence calls.
DOI: 10.5061/dryad.rr65n/9
title: Sequence data used for performing 15KB sliding window phylogenetic analysis of the H. erato red pattern interval

description: Sequence data of Heliconius erato used to perform 15KB sliding window distance-based (neighbor-joining) phylogenetic analysis across the red pattern interval. The file includes the script that generated the trees using PAUP*4b10.
DOI: 10.5061/dryad.s903c/9
title: Giese et al 2013_suppl_image_sheep fold

description: image of a fold where sheep are kept over night and during part of the winter
DOI: 10.5061/dryad.0g0fs/2
title: Lohse_et_al_2012_Analysis

description: Mathematica notebook implementing the likelihood calculation. The summary files provided in Lohse_2012_data.tar are used as input.
DOI: 10.5061/dryad.11p01/2
title: DNA sequences (COI) of limited quality and not deposited in GenBank (FASTA format).

description: Supplement S2. DNA sequences (COI) of limited quality and not deposited in GenBank (FASTA format). Sequences in this supplement were included in the analyses as they successfully identified individuals to the species level with 100% confidence. Numbers at the beginning of each sequence represent collection numbers. Information for each collection was included in Supplement S1.
DOI: 10.5061/dryad.1b736/2
title: R Code For Analyses
DOI: 10.5061/dryad.1q88j/23
title: Richness_Shrub_Colonist

description: Richness over the study period (1979 to 2008) of colonizing shrub species (see Appendix A for species classification). Column headings are: Plot number (first digit is watershed number, 1 or 3); the remainining columns are sampling dates (1979, 1980, 1983, 1987, 1990, 1994, 1997, 2002, and 2008. Units are number of species/plot.
DOI: 10.5061/dryad.1q88j/24
title: Richness_Shrub_Residual

description: Richness over the study period (1979 to 2008) of residual shrub species (see Appendix A for species classification). Column headings are: Plot number (first digit is watershed number, 1 or 3); the remainining columns are sampling dates (1979, 1980, 1983, 1987, 1990, 1994, 1997, 2002, and 2008. Units are number of species/plot.
DOI: 10.5061/dryad.1q88j/26
title: Richness_Total

description: Richness over the study period (1979 to 2008) of all understory species. Column headings are: Plot number (first digit is watershed number, 1 or 3); the remainining columns are sampling dates (1979, 1980, 1983, 1987, 1990, 1994, 1997, 2002, and 2008. Units are number of species/plot.
DOI: 10.5061/dryad.1q88j/31
title: Overstory_Bole_Biomass

description: Plot-level estimates of tree (&gt;1.4 m tall) bole biomass over the study period (1980 to 2007). Column headings are: Plot number (first digit is watershed number, 1 or 3); the remainining columns are sampling dates (1980, 1984, 1988, 1991, 1995, 2001, and 2007. Units are Mg/ha.
DOI: 10.5061/dryad.1tv93/3
title: Structure Data File

description: Data in STRUCTURE format
DOI: 10.5061/dryad.23vp5/1
title: README
DOI: 10.5061/dryad.24k0s/1
title: Andersson2013_AmNat
DOI: 10.5061/dryad.292h7/2
title: Complete dataset of bumblebee transitions in monospecific sites.

description: This xlsb datasheet (created with Microsoft excel 2008 for Mac, version 12.3.2) contains the bumblebee behavior data collected in monospecific sites of Rhinanthus angustifolius and Rhinanthus minor (refered as to "context" in the publication). The file contains several sheets, the last sheet "Notes"  describes each sheet separately. The sheet TD shows the transitions datas collected in the field, and the other TD... sheets are the transition data transformed in order to obtain a correct format for data analysis. The TDComptor sheet is a kind of resume that has been used for statistical analysis of the data using mainly JMP and R, and BI & ERI Analysor (B) contains all the informations for the BI analysis. See further explanations in the publication and in the Note sheet. All the statistical analysis, graphs and data presented in the publication comes from this file and its Sympatric equivalent. Note that this file is active, please be careful with the formulae.
DOI: 10.5061/dryad.2f1k3/3
title: Anas crecca CRYAB alleles.fas

description: FASTA file containing 78 resolved alleles from intron 1 of the alpha-B crystallin (CRYAB) gene sampled from 50 Common (Green-winged) Teal (Anas crecca). The first 50 alleles were sampled from Eurasia, and the next 50 were sampled from North America.
DOI: 10.5061/dryad.2gq14/1
title: AP_DRYAD

description: This contains input and output files generated using BEAST, *BEAST, and MrBayes.  "*BEAST Calibration" contains XML files, log files, and species tree posterior distributions generated using a calibrated root for Ambystoma.  "*BEAST MCC Trees" contains all MCC trees generated for all non-calibrated analyses using *BEAST.  "*BEAST nexus and XML files" contains all XML files and nexus files associated with all non-calibrated analyses using *BEAST.  "BEAST (for STEM) XML files" contains the XML files used for tree reconstruction of each locus using BEAST for downstream use in STEM.  "BEAST MCC Trees (for STEM)" contains all MCC trees generated in BEAST for downstream use in STEM.  "MrBayes Consensus Trees" contains all consensus trees generated using MrBayes.  "MrBayes nexus Files" contains all nexus files used for analyses in MrBayes.
DOI: 10.5061/dryad.53bp0/1
title: HDY-12-OR0207 data
DOI: 10.5061/dryad.5j192/1
title: Data on wild captured Myotis daubentonii
DOI: 10.5061/dryad.5j192/2
title: Results from the host-choice experiment
DOI: 10.5061/dryad.5j192/3
title: Results from the bat fly survival experiment
DOI: 10.5061/dryad.5q35k/1
title: Microsatellite genotypes Amitermes meridionalis

description: These are the microsatellite genotypes of all A. meridionalis individuals included in the corresponding study, collected between 2005 and 2007 in Northern Australia. The sample locations of the colonies are found in the file: Sample locations Amitermes meridionalis.
DOI: 10.5061/dryad.60630/1
title: Song features, scores and ranks
DOI: 10.5061/dryad.6bs31/3
title: Vines_et_al_Rcode_4th_Jan

description: The R code used in the statistical analyses
DOI: 10.5061/dryad.6j9r7/2
title: matrix

description: Alignment of the plastid markers rbcL, ndhF and matK used for phylogenetic analyses, in nexus format.
DOI: 10.5061/dryad.6j9r7/3
title: phylogeny

description: Calibrated phylogenetic tree inferred with Beast based on the three plastid markers rbcL, ndhF and matK.
DOI: 10.5061/dryad.7137r/19
title: bird975_pair7_tutor_all_songs

description: sound file
DOI: 10.5061/dryad.7137r/20
title: bird1419_pair7_son1_all_songs

description: sound file
DOI: 10.5061/dryad.7137r/21
title: bird1418_pair7_son2_all_songs
DOI: 10.5061/dryad.7137r/22
title: bird1170_pair8_tutor_all_songs
DOI: 10.5061/dryad.7137r/23
title: bird1448_pair8_son1_all_songs
DOI: 10.5061/dryad.7137r/24
title: bird1445_pair8_son2_all_songs
DOI: 10.5061/dryad.7137r/25
title: bird1206_pair9_tutor_all_songs
DOI: 10.5061/dryad.76dc8/9
title: Export sites shape file .dbf

description: This .dbf file supports the export sites shape file that shows the six additionally sampled sites for the export parentage analyses.
DOI: 10.5061/dryad.8h022/1
title: Supplementary Archive

description: This archive consists of a single tarball holding a file hierarchy that contains our images, data, and processing scripts. See the associated readme file for more detail.
DOI: 10.5061/dryad.9sj49/1
title: Amblyopsis

description: File contains all raw data from auditory evoked potentials as well as all worksheet files compiled in TDT BioSig from all Amblyopsis trials
DOI: 10.5061/dryad.c0kt5/1
title: Supplemental Table 1

description: Mean convexity values for PPCP1 and PPCP3 in all examined species of Agaricocrinus.