cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.yn6tcb
title: Occurrence Download

description: A dataset containing 10876 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ixodes scapularis Say, 1821"
 ]
}

 The dataset includes 10876 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002600-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.141742
title: Ostracon hiératique Ifao - ODM 1441_nu_2012_17564

description: Référence : nu_2012_17564<br />Site : Deir el-Médina<br />Secteur : Grand puits<br />Type : photographie<br />
DOI: 10.15468/dl.hdg775
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Telmatobius stephani Laurent, 1973"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0306749-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.141743
title: Ostracon hiératique Ifao - ODM 1441_nu_2012_17565

description: Référence : nu_2012_17565<br />Site : Deir el-Médina<br />Secteur : Grand puits<br />Type : photographie<br />
DOI: 10.34816/ifao.archives.141744
title: Ostracon hiératique Ifao - ODM 1441_nu_2012_17566

description: Référence : nu_2012_17566<br />Site : Deir el-Médina<br />Secteur : Grand puits<br />Type : photographie<br />
DOI: 10.34816/ifao.archives.141745
title: Ostracon hiératique Ifao - ODM 1441_nu_2012_17567

description: Référence : nu_2012_17567<br />Site : Deir el-Médina<br />Secteur : Grand puits<br />Type : photographie<br />
DOI: 10.15468/dl.nsz6pk
title: Occurrence Download

description: A dataset containing 1679 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Corchorus trilocularis L."
 ]
}

 The dataset includes 1679 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032070-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wcjqzc
title: Occurrence Download

description: A dataset containing 1066918 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Poland",
 "Country is Germany"
 ]
 },
 "DatasetKey is Observation.org, Nature data from around the World",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1066918 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0306754-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.34a247
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is United States of America",
 "OccurrenceStatus is Present",
 "StateProvince is Arizona & New Mexico"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0200320-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ke8nww
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Viola poetica Boiss. & Spruner"
 ]
}

 The dataset includes 25 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032081-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s2yhf5
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scymnus Kugelann, 1794",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 144 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0313477-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tzbemf
title: Occurrence Download

description: A dataset containing 874 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nyctanthes arbor-tristis L."
 ]
}

 The dataset includes 874 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032553-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.141746
title: Ostracon hiératique Ifao - ODM 1441_nu_2012_17568

description: Référence : nu_2012_17568<br />Site : Deir el-Médina<br />Secteur : Grand puits<br />Type : photographie<br />
DOI: 10.34816/ifao.archives.141747
title: Ostracon hiératique Ifao - ODM 1441_nu_2012_17569

description: Référence : nu_2012_17569<br />Site : Deir el-Médina<br />Secteur : Grand puits<br />Type : photographie<br />
DOI: 10.34816/ifao.archives.141748
title: Ostracon hiératique Ifao - ODM 1441_nu_2012_17570

description: Référence : nu_2012_17570<br />Site : Deir el-Médina<br />Secteur : Grand puits<br />Type : photographie<br />
DOI: 10.15468/dl.wgt62m
title: Occurrence Download

description: A dataset containing 46693 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Phlebia Fr."
 ]
}

 The dataset includes 46693 records from 288 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0428389-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.141749
title: Ostracon hiératique Ifao - ODM 1441_nu_2012_17571

description: Référence : nu_2012_17571<br />Site : Deir el-Médina<br />Secteur : Grand puits<br />Type : photographie<br />
DOI: 10.15468/dl.5qggf8
title: Occurrence Download

description: A dataset containing 966 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "TaxonKey is Rhizophora racemosa G.Mey."
 ]
}

 The dataset includes 966 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002596-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.141750
title: Ostracon hiératique Ifao - ODM 1441_nu_2012_17572

description: Référence : nu_2012_17572<br />Site : Deir el-Médina<br />Secteur : Grand puits<br />Type : photographie<br />
DOI: 10.34816/ifao.archives.141751
title: Ostracon hiératique Ifao - ODM 1291_nb_1997_05314

description: Référence : nb_1997_05314<br />Site : Deir el-Médina<br />Secteur : Village<br />Type : photographie<br />
DOI: 10.34816/ifao.archives.141752
title: Ostracon hiératique Ifao - ODM 1459_nu_2012_17593

description: Référence : nu_2012_17593<br />Site : Deir el-Médina<br />Type : photographie<br />
DOI: 10.34816/ifao.archives.141753
title: Ostracon hiératique Ifao - ODM 1448_nu_2012_17595

description: Référence : nu_2012_17595<br />Site : Deir el-Médina<br />Type : photographie<br />
DOI: 10.15468/dl.d4vma6
title: Occurrence Download

description: A dataset listing the 3421163 species recorded in GBIF matching the query:
{ }

 The dataset's 3421163 records were derived from 40722 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133526-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12745115
title: CO-Fun: A German Dataset on Company Outsourcing in Fund Prospectuses for Named Entity Recognition and Relation Extraction

description: The process of cyber mapping gives insights in relationships among financial entities and service providers. Centered around the outsourcing practices of companies within fund prospectuses in Germany, we introduce a dataset specifically designed for named entity recognition and relation extraction tasks. The labeling process on 948 sentences was carried out by three experts which yields to 5,969 annotations for four entity types (Outsourcing, Company, Location and Software) and 4,102 relation annotations (Outsourcing–Company, Company–Location). Furthermore, state-of-the-art deep learning models were trained on this dataset to recognize entities and extract relations. This repository is the anonymized version of the dataset, along with guidelines and the code used for model training. 

In the following the content of each file is explained:

CO-Fun-1.0-anonymized.jsonl file contains the raw data of CO-Fun consists of records formatted in JSON. Each entry has the annotated text which is present in form of HTML.  The annotation for each named entity in the text are specified with span tags. Below you can find an exmple of an entry in raw data:

{  "datetime": "2023-05-04T14:15:54.501875783",  "entities": [    {      "color": "rgb(255, 0, 0)",      "text": "Ermittlung der tÃ¤glichen und jÃ¤hrlichen Steuerdaten",      "id": "255c1d4a-d9b0-4fff-8779-6a68f803ce51",      "type": "Auslagerung"    },    {      "color": "rgb(0, 0, 255)",      "text": "tba - the beauty aside GmbH",      "id": "fad78727-1645-4b39-9478-daecb3b4bd2b",      "type": "Unternehmen"    }  ],  "text": "<html>                 <head></head>                 <body>                     • Die <span id=\"255c1d4a-d9b0-4fff-8779-6a68f803ce51\" type=\"Auslagerung\" class=\"annotation\" style=\"color: #ff0000\">Ermittlung der tÃ¤glichen und jÃ¤hrlichen Steuerdaten</span> fÃ¼r die Fonds wurde auf die <span id=\"fad78727-1645-4b39-9478-daecb3b4bd2b\" type=\"Unternehmen\" class=\"annotation\" style=\"color: #0000ff\">tba - the beauty aside GmbH</span> ausgelagert.                 </body>              </html>",  "relations": [    {      "src": {: "rgb(255, 0, 0)",        "text": "Ermittlung der tÃ¤glichen und jÃ¤hrlichen Steuerdaten",        "id": "255c1d4a-d9b0-4fff-8779-6a68f803ce51",        "type": "Auslagerung"      },        "color"      "trg": {        "color": "rgb(0, 0, 255)",        "text": "tba - the beauty aside GmbH",        "id": "fad78727-1645-4b39-9478-daecb3b4bd2b",        "type": "Unternehmen"      },      "type": "Auslagerung-Unternehmen"    }  ]}

CO-Fun_Annotation-Guideline-EN.pdf is a graphical user interface in German to annotate a sentence with named entities andrelations.

The prepared-data-and-code folder consists of datasets and python code files for Named Entity Recognition (NER) and Relation Extraction tasks. The training, development and test sets in text format for the CRF model, as well as in text and SpaCy formats for the BERT and RoBERTa models.
DOI: 10.5281/zenodo.12745116
title: CO-Fun: A German Dataset on Company Outsourcing in Fund Prospectuses for Named Entity Recognition and Relation Extraction

description: The process of cyber mapping gives insights in relationships among financial entities and service providers. Centered around the outsourcing practices of companies within fund prospectuses in Germany, we introduce a dataset specifically designed for named entity recognition and relation extraction tasks. The labeling process on 948 sentences was carried out by three experts which yields to 5,969 annotations for four entity types (Outsourcing, Company, Location and Software) and 4,102 relation annotations (Outsourcing–Company, Company–Location). Furthermore, state-of-the-art deep learning models were trained on this dataset to recognize entities and extract relations. This repository is the anonymized version of the dataset, along with guidelines and the code used for model training. 

In the following the content of each file is explained:

CO-Fun-1.0-anonymized.jsonl file contains the raw data of CO-Fun consists of records formatted in JSON. Each entry has the annotated text which is present in form of HTML.  The annotation for each named entity in the text are specified with span tags. Below you can find an exmple of an entry in raw data:

{  "datetime": "2023-05-04T14:15:54.501875783",  "entities": [    {      "color": "rgb(255, 0, 0)",      "text": "Ermittlung der tÃ¤glichen und jÃ¤hrlichen Steuerdaten",      "id": "255c1d4a-d9b0-4fff-8779-6a68f803ce51",      "type": "Auslagerung"    },    {      "color": "rgb(0, 0, 255)",      "text": "tba - the beauty aside GmbH",      "id": "fad78727-1645-4b39-9478-daecb3b4bd2b",      "type": "Unternehmen"    }  ],  "text": "<html>                 <head></head>                 <body>                     • Die <span id=\"255c1d4a-d9b0-4fff-8779-6a68f803ce51\" type=\"Auslagerung\" class=\"annotation\" style=\"color: #ff0000\">Ermittlung der tÃ¤glichen und jÃ¤hrlichen Steuerdaten</span> fÃ¼r die Fonds wurde auf die <span id=\"fad78727-1645-4b39-9478-daecb3b4bd2b\" type=\"Unternehmen\" class=\"annotation\" style=\"color: #0000ff\">tba - the beauty aside GmbH</span> ausgelagert.                 </body>              </html>",  "relations": [    {      "src": {: "rgb(255, 0, 0)",        "text": "Ermittlung der tÃ¤glichen und jÃ¤hrlichen Steuerdaten",        "id": "255c1d4a-d9b0-4fff-8779-6a68f803ce51",        "type": "Auslagerung"      },        "color"      "trg": {        "color": "rgb(0, 0, 255)",        "text": "tba - the beauty aside GmbH",        "id": "fad78727-1645-4b39-9478-daecb3b4bd2b",        "type": "Unternehmen"      },      "type": "Auslagerung-Unternehmen"    }  ]}

CO-Fun_Annotation-Guideline-EN.pdf is a graphical user interface in German to annotate a sentence with named entities andrelations.

The prepared-data-and-code folder consists of datasets and python code files for Named Entity Recognition (NER) and Relation Extraction tasks. The training, development and test sets in text format for the CRF model, as well as in text and SpaCy formats for the BERT and RoBERTa models.
DOI: 10.48557/rs5zmg
title: Code for droplet shape representation using Fourier series and autoencoders

description: The dataset contains the code, training data, and readme file to map droplet shape contours onto minimal dimensional manifolds. Readme.txt file contains all the instructions.
DOI: 10.5281/zenodo.12750598
title: Geochronological and geochemical data of volcanic deposits of the Central Main Ethiopian Rift

description: This database represents a collection of geochronological data, geochemistry of bulk rocks and melt inclusions from a large set of samples collected in the framework of two field surveys (2019, 2020) in the Central Main Ethiopian Rift.

This dataset provides supporting information to the paper:Franceschini Z., Cioni R., Scaillet S., Prouteau G., Corti G., Sani F., Mondanaro A., Frascerra D., Melaku A.A., Scaillet B., Oppenheimer C., Duval F. (2024) "Pulsatory volcanism in the Main Ethiopian Rift and its environmental consequences", Nature Communications Earth and Environment.

The samples have been prepared for the different analyses at the Department of Earth Sciences of the University of Florence. The geochronological analyses building up the dataset have been performed at the Argon facility at the Institut des Sciences de la Terre d'Orléans (ISTO), in France. The analythical methods related to the 40Ar/39Ar analyses are described in detail in the above mentioned paper.The geochemical dataset contains the results of major and trace elements concentrations on whole rock samples (performed at the Service d'Anlayse des Roches et des Mineraux -CNRS - CRPG of Nancy, in France) and major elements and volatile concentrations of melt inclusions belonging to four ignimbrite samples (analysed with an Electron Micro Probe Analyzer housed at the laboratories of the Institut des Sciences de la Terre d'Orléans, in France).

These datasets have been performed in the frame of a PhD fellowship (granted to Zara Franceschini) funded by the Università Italo Francese (Bando Vinci 2018, n. C3-1717) and also partially supported by the Italian Ministero dell'Università e della Ricerca (MiUR) through PRIN grant 2017P9AT72.
DOI: 10.5281/zenodo.12750599
title: Geochronological and geochemical data of volcanic deposits of the Central Main Ethiopian Rift

description: This database represents a collection of geochronological data, geochemistry of bulk rocks and melt inclusions from a large set of samples collected in the framework of two field surveys (2019, 2020) in the Central Main Ethiopian Rift.

This dataset provides supporting information to the paper:Franceschini Z., Cioni R., Scaillet S., Prouteau G., Corti G., Sani F., Mondanaro A., Frascerra D., Melaku A.A., Scaillet B., Oppenheimer C., Duval F. (2024) "Pulsatory volcanism in the Main Ethiopian Rift and its environmental consequences", Nature Communications Earth and Environment.

The samples have been prepared for the different analyses at the Department of Earth Sciences of the University of Florence. The geochronological analyses building up the dataset have been performed at the Argon facility at the Institut des Sciences de la Terre d'Orléans (ISTO), in France. The analythical methods related to the 40Ar/39Ar analyses are described in detail in the above mentioned paper.The geochemical dataset contains the results of major and trace elements concentrations on whole rock samples (performed at the Service d'Anlayse des Roches et des Mineraux -CNRS - CRPG of Nancy, in France) and major elements and volatile concentrations of melt inclusions belonging to four ignimbrite samples (analysed with an Electron Micro Probe Analyzer housed at the laboratories of the Institut des Sciences de la Terre d'Orléans, in France).

These datasets have been performed in the frame of a PhD fellowship (granted to Zara Franceschini) funded by the Università Italo Francese (Bando Vinci 2018, n. C3-1717) and also partially supported by the Italian Ministero dell'Università e della Ricerca (MiUR) through PRIN grant 2017P9AT72.
DOI: 10.15468/dl.bbnkeh
title: Occurrence Download

description: A dataset containing 2179 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Benin",
 "TaxonKey is Vitex doniana Sweet",
 "Year 2000-2024"
 ]
}

 The dataset includes 2179 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028950-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s84cyz
title: Occurrence Download

description: A dataset containing 4451 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Penaeus monodon Fabricius, 1798"
 ]
}

 The dataset includes 4451 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028951-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10034518
title: Ebullition drives high methane emissions from a eutrophic coastal basin

description: Dataset used in the article: "Ebullition drives high methane emissions from a eutrophic coastal basin".
DOI: 10.5281/zenodo.10034519
title: High methane emissions from a eutrophic marine coastal basin driven by bubble release from the sediment - dataset

description: Dataset used in the article: "High methane emissions from a eutrophic marine coastal basin driven by bubble release from the sediment".
DOI: 10.5281/zenodo.10651019
title: High methane emissions from a eutrophic marine coastal basin driven by bubble release from the sediment - dataset

description: Dataset used in the article: "High methane emissions from a eutrophic marine coastal basin driven by bubble release from the sediment".
DOI: 10.5281/zenodo.12772551
title: Ebullition drives high methane emissions from a eutrophic coastal basin

description: Dataset used in the article: "Ebullition drives high methane emissions from a eutrophic coastal basin".
DOI: 10.15468/dl.qrez62
title: Occurrence Download

description: A dataset containing 2012765 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "InstitutionCode is BDBCV"
 ]
}

 The dataset includes 2012765 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028941-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24080521
title: Role of Dectin-1 in immune response of macrophages induced by <i>Fonsecaea monophora</i> wild strain and melanin-deficient mutant strain

description: Chromoblastomycosis is a chronic granulomatous subcutaneous fungal disease caused mainly by <i>Fonsecaea monophora</i> in southern China. Melanin is an important virulence factor in wild strain (Mel+), and the strains lack of the polyketide synthase gene is a melanin-deficient mutant strain (Mel-). We investigated the effect of melanin in <i>F. monophora</i> on Dectin-1 receptor-mediated immune responses in macrophages. Conidia and tiny hyphae of Mel+ and Mel- were co-cultured with THP-1 macrophages expressing normal or low levels of Dectin-1. Compare the killing rate, phagocytosis rate, and expression levels of the inflammatory cytokines tumour necrosis factor-α, interleukin-1β, interleukin-6, and nitric oxide in each group. The results showed that the killing rate, phagocytosis rate, and pro-inflammatory factor levels of Mel+ infected macrophages with normal expression of Dectin-1 were lower than those of Mel-. And the knockdown of Dectin-1 inhibited the phagocytic rate, killing rate, and proinflammatory factor expression in macrophages infected with Mel+ and Mel-. And there was no significant difference in the above indexes between Mel+ and Mel- groups in Dectin-1 knockdown macrophages. In summary, the study reveals that melanin of <i>F. monophora</i> inhibits the immune response effect of the host by hindering its binding to Dectin-1 on the surface of macrophage, which may lead to persistent fungal infections.
DOI: 10.6084/m9.figshare.24080521.v1
title: Role of Dectin-1 in immune response of macrophages induced by <i>Fonsecaea monophora</i> wild strain and melanin-deficient mutant strain

description: Chromoblastomycosis is a chronic granulomatous subcutaneous fungal disease caused mainly by <i>Fonsecaea monophora</i> in southern China. Melanin is an important virulence factor in wild strain (Mel+), and the strains lack of the polyketide synthase gene is a melanin-deficient mutant strain (Mel-). We investigated the effect of melanin in <i>F. monophora</i> on Dectin-1 receptor-mediated immune responses in macrophages. Conidia and tiny hyphae of Mel+ and Mel- were co-cultured with THP-1 macrophages expressing normal or low levels of Dectin-1. Compare the killing rate, phagocytosis rate, and expression levels of the inflammatory cytokines tumour necrosis factor-α, interleukin-1β, interleukin-6, and nitric oxide in each group. The results showed that the killing rate, phagocytosis rate, and pro-inflammatory factor levels of Mel+ infected macrophages with normal expression of Dectin-1 were lower than those of Mel-. And the knockdown of Dectin-1 inhibited the phagocytic rate, killing rate, and proinflammatory factor expression in macrophages infected with Mel+ and Mel-. And there was no significant difference in the above indexes between Mel+ and Mel- groups in Dectin-1 knockdown macrophages. In summary, the study reveals that melanin of <i>F. monophora</i> inhibits the immune response effect of the host by hindering its binding to Dectin-1 on the surface of macrophage, which may lead to persistent fungal infections.