cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh188882.07fu
title: SH188882.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.7414415.v1
title: Additional file 4: of Genome-wide differences in DNA methylation changes in caprine ovaries between oestrous and dioestrous phases

description: Table S4. Differentially methylated genes of the three types of methylated C bases. (XLSX 1582 kb)
DOI: 10.6084/m9.figshare.22618666
title: Additional file 1 of GAS6-AS1, a long noncoding RNA, functions as a key candidate gene in atrial fibrillation related stroke determined by ceRNA network analysis and WGCNA

description: Additional file 1. FigS1. Data distribution. (A) Data distribution of GSE66724 before normalization (B) Data distribution of GSE58294 before normalization (C) Data distribution of the merged dataset after data normalization.
DOI: 10.6084/m9.figshare.22618705
title: Additional file 14 of GAS6-AS1, a long noncoding RNA, functions as a key candidate gene in atrial fibrillation related stroke determined by ceRNA network analysis and WGCNA

description: Additional file 14. FigS6. CeRNA regulatory network. Red rhombuses represent lncRNAs, green triangles represent miRNAs and blue circles represent mRNAs, respectively.
DOI: 10.6084/m9.figshare.7414415
title: Additional file 4: of Genome-wide differences in DNA methylation changes in caprine ovaries between oestrous and dioestrous phases

description: Table S4. Differentially methylated genes of the three types of methylated C bases. (XLSX 1582 kb)
DOI: 10.6084/m9.figshare.7414370.v1
title: Additional file 1: of Genome-wide differences in DNA methylation changes in caprine ovaries between oestrous and dioestrous phases

description: Table S1. Distribution of WGBS reads in different chromosomes. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.7414370
title: Additional file 1: of Genome-wide differences in DNA methylation changes in caprine ovaries between oestrous and dioestrous phases

description: Table S1. Distribution of WGBS reads in different chromosomes. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.7414427.v1
title: Additional file 5: of Genome-wide differences in DNA methylation changes in caprine ovaries between oestrous and dioestrous phases

description: Table S5. Functional categorisation of methylated CpG related genes. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.10037723
title: Additional file 1: Table S1. of Erratum to: â Deregulation of the FOXM1 target gene network and its coregulatory partners in oesophageal adenocarcinomaâ

description: FOXM1 binding regions identified using ChIPseq in OE33 and U2OS cell lines. Data are shown according to classification as high confidence (found in both replicates) or high coverage (found when reads are combined from both replicates and binding regions recalled). (XLSX 519Â kb)
DOI: 10.6084/m9.figshare.22618678.v1
title: Additional file 5 of GAS6-AS1, a long noncoding RNA, functions as a key candidate gene in atrial fibrillation related stroke determined by ceRNA network analysis and WGCNA

description: Additional file 5. GO enrichment analysis of the DEMs.
DOI: 10.6084/m9.figshare.10037723.v1
title: Additional file 1: Table S1. of Erratum to: â Deregulation of the FOXM1 target gene network and its coregulatory partners in oesophageal adenocarcinomaâ

description: FOXM1 binding regions identified using ChIPseq in OE33 and U2OS cell lines. Data are shown according to classification as high confidence (found in both replicates) or high coverage (found when reads are combined from both replicates and binding regions recalled). (XLSX 519Â kb)
DOI: 10.6084/m9.figshare.11086301
title: MOESM1 of Bone microarchitectural parameters can detect oxytocin induced changes prior to bone density on mitigating bone deterioration in rabbit osteoporosis model using micro-CT

description: Additional file 1. Micro-CT raw data.
DOI: 10.6084/m9.figshare.11086301.v1
title: MOESM1 of Bone microarchitectural parameters can detect oxytocin induced changes prior to bone density on mitigating bone deterioration in rabbit osteoporosis model using micro-CT

description: Additional file 1. Micro-CT raw data.
DOI: 10.6084/m9.figshare.11086310
title: MOESM1 of Incomer, a DD36E family of Tc1/mariner transposons newly discovered in animals

description: Additional file 1: Table S1. Taxonomic distribution of Incomer.
DOI: 10.6084/m9.figshare.11086310.v1
title: MOESM1 of Incomer, a DD36E family of Tc1/mariner transposons newly discovered in animals

description: Additional file 1: Table S1. Taxonomic distribution of Incomer.
DOI: 10.6084/m9.figshare.22618681.v1
title: Additional file 6 of GAS6-AS1, a long noncoding RNA, functions as a key candidate gene in atrial fibrillation related stroke determined by ceRNA network analysis and WGCNA

description: Additional file 6. KEGG enrichment analysis of the DEMs.
DOI: 10.6084/m9.figshare.22618684.v1
title: Additional file 7 of GAS6-AS1, a long noncoding RNA, functions as a key candidate gene in atrial fibrillation related stroke determined by ceRNA network analysis and WGCNA

description: Additional file 7. FigS3. GO terms plot of the DEMs, Colors in different plots indicate the level of significance. (A) Biological processes (B) Cellular components (C) Molecular functions.
DOI: 10.6084/m9.figshare.22618687
title: Additional file 8 of GAS6-AS1, a long noncoding RNA, functions as a key candidate gene in atrial fibrillation related stroke determined by ceRNA network analysis and WGCNA

description: Additional file 8. FigS4. Circle plot of the GO enrichment analysis. The left outer semicircle represents the logFC value of the genes, and the right semicircle corresponds to GO terms enriched.
DOI: 10.6084/m9.figshare.22618693.v1
title: Additional file 10 of GAS6-AS1, a long noncoding RNA, functions as a key candidate gene in atrial fibrillation related stroke determined by ceRNA network analysis and WGCNA

description: Additional file 10. Topological features of the nodes in the PPI network.
DOI: 10.6084/m9.figshare.22618696.v1
title: Additional file 11 of GAS6-AS1, a long noncoding RNA, functions as a key candidate gene in atrial fibrillation related stroke determined by ceRNA network analysis and WGCNA

description: Additional file 11. Genes in different cluster identified by MCODE.
DOI: 10.6084/m9.figshare.22618711.v1
title: Additional file 16 of GAS6-AS1, a long noncoding RNA, functions as a key candidate gene in atrial fibrillation related stroke determined by ceRNA network analysis and WGCNA

description: Additional file 16. FigS8. The receiver operator characteristic curves of GAS6-AS1, GOLGA8A, BACH2 and BCL7A for AFST.
DOI: 10.6084/m9.figshare.22617563.v1
title: Additional file 2 of Plant domestication shapes rhizosphere microbiome assembly and metabolic functions

description: Additional file 2: Table S1. Plant phenotypes of 44 Tetraploid wheat species after nine years cultivation. Table S2. Plant phenotypes of six selected Tetraploid wheat species, involving T. turgidum Espana (labelled “D1”), T. turgidum Mexicanos (labelled “D2”), T. turgidum Kazakhstan (labelled “D3”), T. turgidum Turkey III (labelled “W1”), T. turgidum Syria VI (labelled “W2”), and T. turgidum Jordan III (labelled “W3”). Five replicates of each wheat accessions were randomly chosen to measure the plant attributes, including plant height, ear length, sub-segment length, and tiller. Table S3. Effect of domestication status, genome type and niche compartment on the bacterial and fungal communities based on PERMANOVA analysis. Table S4. Analysis of ANOSIM testing microbial communities from rhizosphere and bulk soils based on the Bray-Curtis across different treatments. Significance levels of each predictor are as follows: *P&lt; 0.05, **P&lt; 0.01, and ***P&lt; 0.001. Table S5. Topological features of microbial interkingdom association networks in different domesticated status and their corresponding random networks. Table S6. Characteristics of metagenomics sequencing of rhizosphere microbiomes in wild and domesticated wheats. Table S7. Relative abundance of the metagenomics microbial function profiling (KEGG Orthology function category) in wild and domesticated wheats. Table S8. Root morphology trait of wild and domesticated wheat grown in Hogland nutrient solution and inoculation with rhizosphere microbiota. Table S9. Characteristics of soil samples in different plots for domesticated and whild wheats. Soil nutrients include total carbon (TC), total nitrogen (TN), total phosphorus (TP), total organic carbon (TOC), dissolved organic carbon (DOC), dissolved organic nitrogen (DON), nitrate (NO3-), ammonium (NH4+), soil available phosphorus (AP), soil available potassium (AK).
DOI: 10.6084/m9.figshare.11086325
title: MOESM3 of Incomer, a DD36E family of Tc1/mariner transposons newly discovered in animals

description: Additional file 3: Table S2. Distance of IC elements and RAG1 genes and divergence time of each species using pairwise comparisons. (XLS 52 kb)
DOI: 10.6084/m9.figshare.11086325.v1
title: MOESM3 of Incomer, a DD36E family of Tc1/mariner transposons newly discovered in animals

description: Additional file 3: Table S2. Distance of IC elements and RAG1 genes and divergence time of each species using pairwise comparisons. (XLS 52 kb)
DOI: 10.6084/m9.figshare.11086334
title: MOESM4 of Incomer, a DD36E family of Tc1/mariner transposons newly discovered in animals

description: Additional file 4: Text S1. Sequence alignment of transposase DDE/D domains used to calculate the tree.
DOI: 10.6084/m9.figshare.11086334.v1
title: MOESM4 of Incomer, a DD36E family of Tc1/mariner transposons newly discovered in animals

description: Additional file 4: Text S1. Sequence alignment of transposase DDE/D domains used to calculate the tree.
DOI: 10.6084/m9.figshare.11086337
title: MOESM5 of Incomer, a DD36E family of Tc1/mariner transposons newly discovered in animals

description: Additional file 5: Text S2. Sequence alignment of full-length transposase used to calculate the tree.
DOI: 10.6084/m9.figshare.11086337.v1
title: MOESM5 of Incomer, a DD36E family of Tc1/mariner transposons newly discovered in animals

description: Additional file 5: Text S2. Sequence alignment of full-length transposase used to calculate the tree.
DOI: 10.6084/m9.figshare.11086352
title: MOESM7 of Incomer, a DD36E family of Tc1/mariner transposons newly discovered in animals

description: Additional file 7: Text S3. Alignment of CDS regions of RAG1 genes.
DOI: 10.6084/m9.figshare.11086352.v1
title: MOESM7 of Incomer, a DD36E family of Tc1/mariner transposons newly discovered in animals

description: Additional file 7: Text S3. Alignment of CDS regions of RAG1 genes.
DOI: 10.6084/m9.figshare.11086358
title: MOESM8 of Incomer, a DD36E family of Tc1/mariner transposons newly discovered in animals

description: Additional file 8: Text S4. Alignment of IC elements.
DOI: 10.6084/m9.figshare.11086358.v1
title: MOESM8 of Incomer, a DD36E family of Tc1/mariner transposons newly discovered in animals

description: Additional file 8: Text S4. Alignment of IC elements.
DOI: 10.6084/m9.figshare.11610651
title: MOESM5 of Identification of a small mutation panel of coding sequences to predict the efficacy of immunotherapy for lung adenocarcinoma

description: Additional file 5: Table S4. List of differently expressed genes between high-TMB and low-TMB groups predicted via the 106-CDS panel.
DOI: 10.6084/m9.figshare.11610651.v1
title: MOESM5 of Identification of a small mutation panel of coding sequences to predict the efficacy of immunotherapy for lung adenocarcinoma

description: Additional file 5: Table S4. List of differently expressed genes between high-TMB and low-TMB groups predicted via the 106-CDS panel.
DOI: 10.6084/m9.figshare.7414391
title: Additional file 2: of Genome-wide differences in DNA methylation changes in caprine ovaries between oestrous and dioestrous phases

description: Table S2. Distribution of three mC types in gene regions. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.22618727
title: Additional file 1 of Pharmacogenomic profiling reveals molecular features of chemotherapy resistance in IDH wild-type primary glioblastoma

description: Additional file 1: Table S1. Clinical annotations of 128 GBM samples used in the study. Table S2. Variants identified by WES and GliomaSCAN. Table S3. Copy number alteration by WES and/or RNA-seq. Table S4. EGFRvIII detection in RNA-seq available samples. Table S5. Input file used for machine learning training.
DOI: 10.6084/m9.figshare.22618727.v1
title: Additional file 1 of Pharmacogenomic profiling reveals molecular features of chemotherapy resistance in IDH wild-type primary glioblastoma

description: Additional file 1: Table S1. Clinical annotations of 128 GBM samples used in the study. Table S2. Variants identified by WES and GliomaSCAN. Table S3. Copy number alteration by WES and/or RNA-seq. Table S4. EGFRvIII detection in RNA-seq available samples. Table S5. Input file used for machine learning training.
DOI: 10.6084/m9.figshare.7414406.v1
title: Additional file 3: of Genome-wide differences in DNA methylation changes in caprine ovaries between oestrous and dioestrous phases

description: Table S3. Three types (CpG, CHG and CHH) of methylation characterisation of differentially methylated regions. The fold change of the average methylation level &gt; 2 and Pearson’s chi-square test (χ2) value P ≤ 0.05. H = A/T/C. (XLSX 4649 kb)
DOI: 10.6084/m9.figshare.20521601.v1
title: Additional file 3 of Circular RNA circFIRRE drives osteosarcoma progression and metastasis through tumorigenic-angiogenic coupling

description: Additional file 3: Table S1. 163 differentially expressed circRNAs met the screening criteria in RNA sequencing.
DOI: 10.6084/m9.figshare.20521601
title: Additional file 3 of Circular RNA circFIRRE drives osteosarcoma progression and metastasis through tumorigenic-angiogenic coupling

description: Additional file 3: Table S1. 163 differentially expressed circRNAs met the screening criteria in RNA sequencing.
DOI: 10.6084/m9.figshare.24717867
title: Liang-Data Description.docx

description: Earthquake risk assessments of faults often overlook the influence of intermediate principal stress on faults. However, recent studies have shown that intermediate principal stress can alter the internal friction angle, which in turn affects the friction coefficient and strength of rocks. In this study, we conducted slip experiments on granitic faults to investigate the effect of intermediate principal stress (5MPa, 10MPa, 15MPa, 20MPa, 25MPa) on the maximum static friction coefficient. Meanwhile, direct shear tests with varying intermediate principal stress also have been conducted. The DEM method have been used to simulate the the contact properties of fault planes under different intermediate principal stress. Herein, we compile the processed data obtained from the experiments in following files:
DOI: 10.6084/m9.figshare.16853670
title: Data from A portable exotendon assisting hip and knee joints reduces muscular burden during walking

description: Data from A portable exotendon assisting hip and knee joints reduces muscular burden during walking
DOI: 10.6084/m9.figshare.25163684.v2
title: BTR dataset

description: This spreadsheet contains a portion of the PRECISE and MAS datasets utilized in our article "Exploring the Link between Brain Topological Resilience and Cognitive Performance in the Context of Aging and Vascular Risk Factors: A Cross-Ethnicity Population-Based Study." The data include the sample IDs used and the BTR values after our processing. Data of models are also included here. Due to data ethical restrictions, the full datasets can only be accessed via the following link:PRECISE dataset: http://paper.ncrcnd.ttctrc.com/default/project-detail?id=297&lang=enMAS dataset: https://cheba.unsw.edu.au/research-projects/sydney-memory-and-ageing-study
DOI: 10.6084/m9.figshare.25163684.v3
title: BTR dataset

description: This spreadsheet contains a portion of the PRECISE and MAS datasets utilized in our article "Exploring the Link between Brain Topological Resilience and Cognitive Performance in the Context of Aging and Vascular Risk Factors: A Cross-Ethnicity Population-Based Study." The data include the sample IDs used and the BTR values after our processing. Data of models are also included here. Due to data ethical restrictions, the full datasets can only be accessed via the following link:PRECISE dataset: http://paper.ncrcnd.ttctrc.com/default/project-detail?id=297&lang=enMAS dataset: https://cheba.unsw.edu.au/research-projects/sydney-memory-and-ageing-study
DOI: 10.6084/m9.figshare.7414427
title: Additional file 5: of Genome-wide differences in DNA methylation changes in caprine ovaries between oestrous and dioestrous phases

description: Table S5. Functional categorisation of methylated CpG related genes. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.22618744
title: Additional file 4 of Protein disulfide-isomerase A4 confers glioblastoma angiogenesis promotion capacity and resistance to anti-angiogenic therapy

description: Additional file 4: Supplementary Table 1. Secretory protein identified in Tao et al.'s work
DOI: 10.6084/m9.figshare.22618744.v1
title: Additional file 4 of Protein disulfide-isomerase A4 confers glioblastoma angiogenesis promotion capacity and resistance to anti-angiogenic therapy

description: Additional file 4: Supplementary Table 1. Secretory protein identified in Tao et al.'s work
DOI: 10.6084/m9.figshare.22618747
title: Additional file 5 of Protein disulfide-isomerase A4 confers glioblastoma angiogenesis promotion capacity and resistance to anti-angiogenic therapy

description: Additional file 5: Supplementary Table 2. The substrate proteins of PDIA4 we identified
DOI: 10.6084/m9.figshare.7414391.v1
title: Additional file 2: of Genome-wide differences in DNA methylation changes in caprine ovaries between oestrous and dioestrous phases

description: Table S2. Distribution of three mC types in gene regions. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.22618786.v1
title: Additional file 6 of LINP1 represses unfolded protein response by directly inhibiting eIF2α phosphorylation to promote cutaneous squamous cell carcinoma

description: Additional file 6: Table S5. Oligonucleotides used for qRT-PCR, knockout, knockdown and ISH detection
DOI: 10.6084/m9.figshare.7414451
title: Additional file 6: of Genome-wide differences in DNA methylation changes in caprine ovaries between oestrous and dioestrous phases

description: Table S6. KEGG pathways of differentially methylated genes in DS versus ES. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.22618783
title: Additional file 5 of LINP1 represses unfolded protein response by directly inhibiting eIF2α phosphorylation to promote cutaneous squamous cell carcinoma

description: Additional file 5: Table S4. KEGG annotation clustering of regulated proteins specifically associating with LINP1 identified by RNA pulldown followed by HPLC-MS
DOI: 10.6084/m9.figshare.22618777
title: Additional file 3 of LINP1 represses unfolded protein response by directly inhibiting eIF2α phosphorylation to promote cutaneous squamous cell carcinoma

description: Additional file 3: Table S2. KEGG and GO annotation clustering of regulated genes in LINP1-depleted cells
DOI: 10.6084/m9.figshare.22618777.v1
title: Additional file 3 of LINP1 represses unfolded protein response by directly inhibiting eIF2α phosphorylation to promote cutaneous squamous cell carcinoma

description: Additional file 3: Table S2. KEGG and GO annotation clustering of regulated genes in LINP1-depleted cells
DOI: 10.6084/m9.figshare.22618808.v1
title: Additional file 1 of Comparative analysis of Fusarium crown rot resistance in synthetic hexaploid wheats and their parental genotypes

description: Additional file 1: Table S1. Primers for real-time quantitative PCR. Table S2. RNA-seq read information and mapping statistics of 2 SHWs and their tetraploid and diploid parents. Table S3. Differentially expressed gene (DEGs) of 2 SHWs and their tetraploid and diploid parents. Table S4. GO terms enriched by up-regulated DEGs of 2 SHWs and their tetraploid and diploid parents. Table S5. GO terms enriched by down-regulated DEGs of 2 SHWs and their tetraploid and diploid parents. Table S6. PAL activity, chitinase activity, SA content, JA content and ABA content of the stem base in 5 SHWs and their parents following FCR infection. Table S7. Total lignin content of the stem base of 10 SHWs and their tetraploid parents at the seedling and heading stage.
DOI: 10.6084/m9.figshare.22618774.v1
title: Additional file 2 of LINP1 represses unfolded protein response by directly inhibiting eIF2α phosphorylation to promote cutaneous squamous cell carcinoma

description: Additional file 2: Table S1. Differentially expressed genes in response to LINP1 depletion
DOI: 10.6084/m9.figshare.22618780
title: Additional file 4 of LINP1 represses unfolded protein response by directly inhibiting eIF2α phosphorylation to promote cutaneous squamous cell carcinoma

description: Additional file 4: Table S3. List of proteins specifically associating with LINP1 identified by RNA pulldown followed by HPLC-MS
DOI: 10.6084/m9.figshare.22618808
title: Additional file 1 of Comparative analysis of Fusarium crown rot resistance in synthetic hexaploid wheats and their parental genotypes

description: Additional file 1: Table S1. Primers for real-time quantitative PCR. Table S2. RNA-seq read information and mapping statistics of 2 SHWs and their tetraploid and diploid parents. Table S3. Differentially expressed gene (DEGs) of 2 SHWs and their tetraploid and diploid parents. Table S4. GO terms enriched by up-regulated DEGs of 2 SHWs and their tetraploid and diploid parents. Table S5. GO terms enriched by down-regulated DEGs of 2 SHWs and their tetraploid and diploid parents. Table S6. PAL activity, chitinase activity, SA content, JA content and ABA content of the stem base in 5 SHWs and their parents following FCR infection. Table S7. Total lignin content of the stem base of 10 SHWs and their tetraploid parents at the seedling and heading stage.
DOI: 10.6084/m9.figshare.7414469
title: Additional file 7: of Genome-wide differences in DNA methylation changes in caprine ovaries between oestrous and dioestrous phases

description: Table S7. KEGG pathway of hypermethylated and hypomethylated genes in DS versus ES. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.22618786
title: Additional file 6 of LINP1 represses unfolded protein response by directly inhibiting eIF2α phosphorylation to promote cutaneous squamous cell carcinoma

description: Additional file 6: Table S5. Oligonucleotides used for qRT-PCR, knockout, knockdown and ISH detection