cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3607541_d6.v1
title: Additional file 4: Table S3. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

description: Excel file describing previously identified production or fertility trait QTL that overlap with the SNPs identified in this study for milk production (MILK), fat production (FAT), fat deviation (FATD), protein production (PROTD) and protein deviation (PROTD). (XLS 4775 kb)
DOI: 10.6084/m9.figshare.c.3608009_d6.v1
title: Additional file 4: of Comparative transcriptomics of anal fin pigmentation patterns in cichlid fishes

description: qPCR results for P. pulpican. (XLSX 257 kb)
DOI: 10.6084/m9.figshare.c.3607979_d12.v1
title: Additional file 7: of Genome sequence, population history, and pelage genetics of the endangered African wild dog (Lycaon pictus)

description: Autosomal BUSCO orthologs identified in the CanFam3.1 assembly. Scaffolds are identified by GenBank accession. (XLSX 182Â kb)
DOI: 10.6084/m9.figshare.c.3608018_d2.v1
title: Additional file 2: of Use of the Theoretical Domains Framework to evaluate factors driving successful implementation of the Accelerated Chest pain Risk Evaluation (ACRE) project

description: Collated survey responses. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3608021_d3.v1
title: Additional file 5: of Urinary metabolomics of young Italian autistic children supports abnormal tryptophan and purine metabolism

description: Summary statistics. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3608513_d14.v1
title: Additional file 2: of Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

description: Evaluating the efficiency of P-clouds and Red. This file describes data on the relaibility of P-clouds, Red and REPET for evaluating the numbers of repeats in a eukaryotic genome. A synthesis of results supports that the sequence diversity and distribution of minisatellites as well as the lack of repeated satellite DNAs in numerous microchromosomes might be a signature specific to avian genomes. (ODT 23 kb)
DOI: 10.6084/m9.figshare.c.3608513_d16.v1
title: Additional file 10: of Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

description: Features of 8 repeat models that cannot be assigned to a known eukaryotic TE. The sequence features of 27 consensuses gathered into 8 TE models were analysed. Results supported that none of them can be definitively considered as originating from LTR elements. (ODT 91 kb)
DOI: 10.6084/m9.figshare.c.3608561_d2.v1
title: MOESM7 of Associations between blood glucose level and outcomes of adult in-hospital cardiac arrest: a retrospective cohort study

description: Additional file 7.
DOI: 10.5281/zenodo.14510372
title: WHOW RML files

description: The RML file used for converting input datasets to the WHOW KG. he RDF Mapping language (RML) is a mapping language defined to express customized mapping rules from heterogeneous data structures and serializations to the RDF data model.
DOI: 10.6084/m9.figshare.c.3608513_d17.v1
title: Additional file 14: of Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

description: Origins of differences between ISB and [TE + DM] annotations. ISB and [TE + DM] annotations were samples in order to define the origins of differences. (ODT 101 kb)
DOI: 10.6084/m9.figshare.c.3608513_d18.v1
title: Additional file 13: of Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

description: The number of RM annotations that had no equivalent in the [TE + DM] annotation. Results are summarized within a table between both approaches. (ODS 36 kb)
DOI: 10.6084/m9.figshare.c.3608522_d12.v1
title: Additional file 7: of Polymorphisms and minihaplotypes in the VvNAC26 gene associate with berry size variation in grapevine

description: List of the 69 polymorphisms detected in the sequence of the VvNAC26 gene in the set of grapevine varieties analized in this study. (XLSX 14 kb)
DOI: 10.5281/zenodo.13935220
title: Data and code for "Vertical and temporal H3+ structure at the auroral footprint of Io"

description: Data and code for "Vertical and temporal H3+ structure at the auroral footprint of Io".

Data  used to obtain the Figure 2 is in ascii format and has the following columns:

Date	
Time	
File name in PDS 
Average radiance in the ROI (mW m^-2 sr^-1)

Code can be executed in the MATLAB environment. The code can be executed as:

 

v=myfunc(D0,F0,t)

 

given the time t, the peak density of H3+ D0 at time t=0,  and the conversion factor from column density to radiance F0, gives the vertically-emitted radiance v (mW m^-2 sr^-1)
DOI: 10.6084/m9.figshare.c.3609050_d1.v1
title: Additional file 1: of Epigenetic changes mediated by polycomb repressive complex 2 and E2a are associated with drug resistance in a mouse model of lymphoma

description: Supplementary Results and Methods. All supplementary figures, tables, legends, results, methods, and references are contained in Additional file 1. (ZIP 2461 kb)
DOI: 10.6084/m9.figshare.c.3609032_d2.v1
title: Additional file 2: of Predictors of mortality in a cohort of tuberculosis/HIV co-infected patients in Southwest Ethiopia

description: Clinical and non-clinical data of Tb/HIV co-infectd patients attending in JUTH, Southwest Ethiopia. (SAV 17 kb)
DOI: 10.6084/m9.figshare.c.3609047_d4.v1
title: Additional file 11: Table S6. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

description: Annotation details and accession numbers of ATP-binding cassette family transporters. (XLSX 441 kb)
DOI: 10.6084/m9.figshare.c.3609062_d2.v1
title: Additional file 3: of Peer-instructed seminar attendance is associated with improved preparation, deeper learning and higher exam scores: a survey study

description: Raw data collected via questionnaires. (XLSX 72 kb)
DOI: 10.6084/m9.figshare.c.3609047_d5.v1
title: Additional file 7: Table S3. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

description: Annotation details and accession numbers of Cytochrome P450s. (XLSX 154 kb)
DOI: 10.5519/qd.tnmusht9
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (35 records)
DOI: 10.6084/m9.figshare.c.3609596_d1.v1
title: Additional file 3: of 
                     De-novo transcriptome assembly for gene identification, analysis, annotation, and molecular marker discovery in Onobrychis viciifolia

description: Annotation of the sainfoin assembly. Excel file with list of annotated contigs from Sainfoin Transcriptome 1.0. Contig names in green indicate transcripts encoding genes involved in the flavonoid biosynthesis pathway. Contigs in blue indicate transcripts with potential involvement in proanthocyanidin biosynthesis. (XLSX 1685Â kb)
DOI: 10.6084/m9.figshare.c.3609596_d2.v1
title: Additional file 2: of 
                     De-novo transcriptome assembly for gene identification, analysis, annotation, and molecular marker discovery in Onobrychis viciifolia

description: Transcriptomics assembly. FASTA file of 92772 sainfoin transcripts. (ZIP 26489Â kb)
DOI: 10.6084/m9.figshare.c.3609596_d3.v1
title: Additional file 7: of 
                     De-novo transcriptome assembly for gene identification, analysis, annotation, and molecular marker discovery in Onobrychis viciifolia

description: Experimentally validated SNPs. Excel file summarising the experimentally validated SNPs. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3610025_d8.v1
title: Additional file 2: Table S1. of The structure and diversity of human, animal and environmental resistomes

description: Relative abundance of antibiotic resistance genes in air samples. (XLSX 68Â kb)
DOI: 10.6084/m9.figshare.c.3610061_d1.v1
title: Additional file 5: of New data from basal Australian songbird lineages show that complex structure of MHC class II Î˛ genes has early evolutionary origins within passerines

description: Primer sequences trialled in this study. Standard International Union of Biochemistry (IUB) codes are used for degenerate primers. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3610043_d4.v1
title: Additional file 7: of Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana

description: Table S5. Normalised experimental data of metabolite, protein and phosphopeptide levels. (XLSX 1210 kb)
DOI: 10.6084/m9.figshare.c.3610064_d2.v1
title: Additional file 1: of Anchoring genome sequence to chromosomes of the central bearded dragon (Pogona vitticeps) enables reconstruction of ancestral squamate macrochromosomes and identifies sequence content of the Z chromosome

description: HSB, primer and BAC clone information. (XLSX 134Â kb)
DOI: 10.6084/m9.figshare.c.3610043_d5.v1
title: Additional file 6: of Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana

description: Table S4. Loadings of the phosphoprotein PCA shown in Fig.Â 2c of the main document. (XLS 66 kb)
DOI: 10.6084/m9.figshare.c.3610064_d3.v1
title: Additional file 4: of Anchoring genome sequence to chromosomes of the central bearded dragon (Pogona vitticeps) enables reconstruction of ancestral squamate macrochromosomes and identifies sequence content of the Z chromosome

description: Gene synteny between chicken and dragon (XLSX 2298Â kb)
DOI: 10.6084/m9.figshare.c.3610061_d3.v1
title: Additional file 1: of New data from basal Australian songbird lineages show that complex structure of MHC class II Î˛ genes has early evolutionary origins within passerines

description: MHC class II Î˛ exon 2 alleles identified through cloning and 454 sequencing methods. Sample size, range and total number of alleles per species, and putative number of loci per species are given. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.c.3610043_d6.v1
title: Additional file 13: of Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana

description: Table S11. Proteomics minimal information for reproducibility of experiments. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3610064_d4.v1
title: Additional file 7: of Anchoring genome sequence to chromosomes of the central bearded dragon (Pogona vitticeps) enables reconstruction of ancestral squamate macrochromosomes and identifies sequence content of the Z chromosome

description: Script A2 to take output from synteny_pairwise.cgi and simultaneously combine species information. (CGI 9Â kb)
DOI: 10.6084/m9.figshare.c.3610043_d7.v1
title: Additional file 5: of Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana

description: Table S3. Cold-induced effects on protein levels of components of the 40S and 60S ribosomal subunits. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3610043_d8.v1
title: Additional file 1: of Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana

description: Table S1. Loadings of the metabolite PCA shown in Fig.Â 2a of the main document. (XLS 38 kb)
DOI: 10.6084/m9.figshare.c.3610607_d6.v1
title: Additional file 5: of Transcriptomic analysis reveals specific osmoregulatory adaptive responses in gill mitochondria-rich cells and pavement cells of the Japanese eel

description: Gene ontology of DEGs identified from FW PVCs and SW PVCs. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.c.3610607_d7.v1
title: Additional file 11: of Transcriptomic analysis reveals specific osmoregulatory adaptive responses in gill mitochondria-rich cells and pavement cells of the Japanese eel

description: Primers for real-time PCR of selected genes. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3610649_d1.v1
title: Additional file 1: Table S1. of Association of pre-operative medication use with post-operative delirium in surgical oncology patients receiving comprehensive geriatric assessment

description: Raw data for the study of association between pre-operative medication use and post-operative delirium in surgical oncology patients receiving comprehensive geriatric assessment. (XLSX 129 kb)
DOI: 10.6084/m9.figshare.c.3610628_d5.v1
title: Additional file 7: of Identification of the novel activity-driven interaction between synaptotagmin 1 and presenilin 1 links calcium, synapse, and amyloid beta

description: Supporting data values. The file presents individual values recorded in the experiments where nâ
DOI: 10.6084/m9.figshare.c.3610628_d6.v1
title: Additional file 2: of Identification of the novel activity-driven interaction between synaptotagmin 1 and presenilin 1 links calcium, synapse, and amyloid beta

description: Proteins identified in mass spectrometry screen of mouse brain lysates for novel PS1 calcium-dependent interactors. Synaptotagmin 1 (Syt1) was detected in high calcium condition (calcium +) when GST-PS1 L6-7 and GST-PS1 NT recombinant peptides were used for pull-down. Excised band size and protein matches are indicated. (nâ  =â  3; Data from one representative experiment is shown). (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3610643_d4.v1
title: Additional file 4: of Small area synthetic estimates of smoking prevalence during pregnancy in England

description: Point estimates and 95Â % credible intervals for the prevalence of smoking ever during pregnancy and at delivery by PCT. (XLSX 49Â kb)
DOI: 10.6084/m9.figshare.c.3610607_d10.v1
title: Additional file 2: of Transcriptomic analysis reveals specific osmoregulatory adaptive responses in gill mitochondria-rich cells and pavement cells of the Japanese eel

description: Taxonomic distribution of the 12,003 identified eel gill transcripts. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3610607_d11.v1
title: Additional file 1: of Transcriptomic analysis reveals specific osmoregulatory adaptive responses in gill mitochondria-rich cells and pavement cells of the Japanese eel

description: List of 12,003 identified transcripts in eel gill cells. (XLSX 28990 kb)
DOI: 10.25574/62743
title: Chandra X-ray Observatory ObsId 62743
DOI: 10.6084/m9.figshare.c.3611087_d12.v1
title: Additional file 5: Table S4. of Overlapping cell population expression profiling and regulatory inference in C. elegans

description: Reads per million for each gene. (XLSX 6277Â kb)
DOI: 10.6084/m9.figshare.c.3611087_d13.v1
title: Additional file 16: Table S13. of Overlapping cell population expression profiling and regulatory inference in C. elegans

description: Expression annotation in clustered genes. (XLSX 105Â kb)
DOI: 10.6084/m9.figshare.c.3611126_d6.v1
title: Additional file 6: Table S4. of Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome

description: Description of the FANTOM5 monocyte and macrophage libraries. Table contains a summary description for each of the 55 FANTOM5 monocyte and macrophage librariesÂ - as provided by the FANTOM5 consortium. (CSV 5 kb)
DOI: 10.6084/m9.figshare.c.3611126_d7.v1
title: Additional file 4: Table S3. of Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome

description: Table S3A: Locations of FANTOM5 mouse promoters mapped to the pig genome. Table contains the following columns (left to right): FANTOM5 mouse promoter ID, Ensembl gene ID associated with the FANTOM5 mouse promoter, mapping locations to the pig genome (Sscrofa10.2), the nearest pig Ensembl ID to the mapped promoter (strand-specific) and the number of pig CAGE CTSS and/or RNA-Seq signal (assembled transcripts from pooled macrophage libraries) located within a 20 Kb window from the 3â  -end of the mapped promoter. Table S3B: Locations of FANTOM5 mouse promoters mapped to the human genome. Table contains the following columns (left to right): FANTOM5 mouse promoter ID, Ensembl gene ID associated with the FANTOM5 mouse promoter, mapping locations to the human genome (hg19), the nearest human Ensembl ID to the mapped promoter (strand-specific). (ZIP 2981 kb)
DOI: 10.6084/m9.figshare.c.3611126_d8.v1
title: Additional file 5: Figure S2. of Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome

description: Distribution of FANTOM5 human promotersâ   expression â   mappings proximal or distant from pig CAGE CTSS clusters. S2A: FANTOM5 human promoter mapped with proximal (&lt;=2 Kb) pig CAGE CTSS cluster. S2B: FANTOM5 human promoter mapped without a nearby pig CAGE CTSS cluster (&gt;2 Kb). The y-axis shows the FPKM expression values; the x-axis shows the number corresponding to each of the 55 FANTOM5 monocyte and macrophage libraries as described in the Additional file 6: Table S4. (ZIP 282 kb)
DOI: 10.6084/m9.figshare.c.3611087_d15.v1
title: Additional file 18: Table S15. of Overlapping cell population expression profiling and regulatory inference in C. elegans

description: Motifs enriched upstream of clustered genes. (XLSX 3423Â kb)
DOI: 10.15468/dl.mc8xej
title: Occurrence Download

description: A dataset containing 825 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-100.293 21.279,-100.178 21.279,-100.178 21.388,-100.293 21.388,-100.293 21.279))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 825 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037934-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3611126_d9.v1
title: Additional file 14: Table S10. of Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome

description: Mapping locations of the pig CAGE CTSS to the pig genome: multimapped subset (BED). Table contains the following columns (left to right): chromosome, start, end, pig CAGE CTSS ID (strand-specific), number of tags in the CTSS and strand. The first three and sixth columns refer to the mapped locations of the pig CAGE CTSS (as identified by the ID in column 4) onto the pig genome. The set of pig CAGE CTSS reported includes only the multimapped pig CAGE tags. (TSV 5734 kb)
DOI: 10.6084/m9.figshare.c.3611087_d16.v1
title: Additional file 10: Table S8. of Overlapping cell population expression profiling and regulatory inference in C. elegans

description: Gene ontology terms enriched in FACS-sorted samples. (XLSX 93Â kb)
DOI: 10.6084/m9.figshare.c.3611126_d10.v1
title: Additional file 10: Table S6. of Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome

description: List of enriched GO terms for the set of human genes associated with high-confidence mapped FANTOM5 human promoters to the pig genome. List of enriched GO terms for the target set of 3794 human genes which are associated with FANTOM5 human promoters mapped with high confidence to the pig genome (i.e. supported by pig CAGE and RNA-Seq expression signal) versus the background set of human genes with FANTOM5 human promoter. GO enrichment analysis was performed using GOrilla [54]. See Additional file 3: Table S1 for the description of each column. (XLS 4622 kb)
DOI: 10.6084/m9.figshare.c.3611126_d11.v1
title: Additional file 2: Table S2. of Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome

description: Table S2A â   Locations of FANTOM5 human promoters mapped to the pig genome. Table contains the following columns (left to right): FANTOM5 human promoter ID, Ensembl gene ID associated with the FANTOM5 human promoter, mapping locations to the pig genome (Sscrofa10.2), the nearest pig Ensembl ID to the mapped promoter (strand-specific) and the number of pig CAGE CTSS and/or RNA-Seq signal (assembled transcripts from pooled macrophage libraries) located within a 20 Kb window from the 3â  -end of the mapped promoter. Table S2B â   Locations of FANTOM5 human promoters mapped to the mouse genome. Table contains the following columns (left to right): FANTOM5 human promoter ID, Ensembl gene ID associated with the FANTOM5 human promoter, mapping locations to the mouse genome (mm9), the nearest mouse Ensembl ID to the mapped promoter (strand-specific). (ZIP 5853 kb)
DOI: 10.6084/m9.figshare.c.3611087_d18.v1
title: Additional file 11: Table S9. of Overlapping cell population expression profiling and regulatory inference in C. elegans

description: Motifs enriched upstream of genes in FACS-sorted samples. (XLSX 5512Â kb)
DOI: 10.6084/m9.figshare.c.3611126_d12.v1
title: Additional file 3: Table S1. of Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome

description: GO enrichment analysis for the human genes with FANTOM5 human TSS unmapped to the pig genome. Table shows the list of GO terms enriched for two sets of human genes: (i) for which at least one FANTOM5 human TSS was not mapped to the pig genome (class referred to as genes_tss) and (ii) for which all the associated FANTOM5 human TSS were not mapped to the pig genome (class referred to as genes_none). GO enrichment analysis was performed against a background set consisting of all the human genes with a known associated FANTOM5 human TSS using GOrilla [54]. The columns from left to right indicate: GO terms ID; description of the GO term; P-value; FDR adjusted q-value (i.e. P-value corrected for multiple testing using the Benjamini and Hochbergâ  s method); Enrichment; total number of genes (N); total number of genes associated with a specific GO term (B); number of genes in the target set (n); number of genes in the intersection (b). Enrichment is defined as (b/n)/(B/N) [54]. The last column (Genes) displays the list of associated genes that appear in the optimal top of the list â   each gene name is shown with its gene symbol followed by a short description of the gene. (XLS 1049 kb)
DOI: 10.6084/m9.figshare.c.3611609_d2.v1
title: Additional file 2: Table S1. of A sensitive bacterial-growth-based test reveals how intestinal Bacteroides meet their porphyrin requirement

description: Heme-PPIX-Screen detection of pure heme or in biological samples. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.c.3611585_d7.v1
title: Additional file 7: of Mapping the genomic mosaic of two ‘Afro-Bolivians’ from the isolated Yungas valleys

description: Ancestry memberships as computed using the unsupervised clustering algorithm from ADMIXTURE and a large dataset representing main sub-continental African regions and the Tocaña, for an optimum value of K = 12. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3611597_d4.v1
title: Additional file 8: Table S2. of Pangenome analysis of Bifidobacterium longum and site-directed mutagenesis through by-pass of restriction-modification systems

description: Primers used in this study. An .xls document with a list of primer used in this study and sequences of restriction sites are indicated in bold text. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3611633_d1.v1
title: MOESM1 of No filters, no fridges: a method for preservation of water samples for eDNA analysis

description: Additional file 1. Sample ID and treatment with measured DNA concentration (qPCR) and days of degradation.