cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3597707_d1.v1
title: Additional file 1: of A genome-wide analysis in cluster headache points to neprilysin and PACAP receptor gene variants

description: Supplemental Methods. Table S1. list of selected candidate genes, GO terms annotations, number of rare protein altering variants (PAV) contained in each gene, and gene-level P-values obtained from SKAT analysis. Table S2. list of rare PAV (MAFâ
DOI: 10.5281/zenodo.14505094
title: Deep learning based earthquake and vehicle detection algorithm
DOI: 10.5281/zenodo.14505095
title: Deep learning based earthquake and vehicle detection algorithm
DOI: 10.6084/m9.figshare.c.3597656_d8.v1
title: Additional file 15: of A MAGIC population-based genome-wide association study reveals functional association of GhRBB1_A07 gene with superior fiber quality in cotton

description: Title: Annotated genes within 71 M bp and 76 M bp region of chromosome A07 and their RNA-seq data. Description of data: This table contains gene name and associated annotation near the detected loci on chromosome A07. The RNA-seq data from our previous studies for the gene are also included in this table. First column have the gene name followed by physical location, Arabidopsis ortholog gene, gene description and RPKM value of RNA-seq data for the different RNA libraries. (XLSX 75 kb)
DOI: 10.6084/m9.figshare.c.3597713_d2.v1
title: Additional file 1: Table S1. of The genome of newly classified Ochroconis mirabilis: Insights into fungal adaptation to different living conditions

description: List of genome sequences used in gene families analysis and phylogenomic tree construction. Table S2. Number of CAZyme modules predicted in UM 578 genome. Table S3. Plant cell wall and fungal cell wall degrading and modifying CAZyme families predicted in UM 578. Table S4. Number of peptidases predicted in UM 578. Table S5. Comparison of putative secreted proteases families which had been reported to be expanded in dermatophytes. Table S6. Gene families clusters shared among UM 578 with Trichophyton rubrum and T. verrucosum in this study. Table S7. Predicted lipases in the genomes of UM 578 with skin-inhabiting and non-skin inhabiting fungi. Table S8. Putative biosynthetic pathway genes involved in aflatoxin (AF), sterigmatocystin (ST) and dothistromin (DOT) production predicted in UM 578. Table S9. Putative biosynthetic pathway genes for trichothecene production predicted in UM 578. Table S10. Predicted gene involved in sexual reproduction in UM 578. Table S11. UM 578 specific gene families clusters compared to 16 publicly available fungal genomes. Table S12. Expansion and contraction of Pfam families from CAFE analysis. The P-value for whole family expansion/ contraction is shown as family wide P-value and the node specific for UM 578 is shown (Additional file 2: Figure S15). Only families with family wide P-value â ¤0.01 are shown. (XLS 307 kb)
DOI: 10.6084/m9.figshare.c.3597809_d2.v1
title: Additional file 4: of Maternal care in Acanthosomatinae (Insecta: Heteroptera: Acanthosomatidae)â  correlated evolution with morphological change

description: Format: nexus. Title: Data matrix of aligned sequences for Bayesian analysis. (NEX 130Â kb)
DOI: 10.6084/m9.figshare.c.3597809_d3.v1
title: Additional file 3: of Maternal care in Acanthosomatinae (Insecta: Heteroptera: Acanthosomatidae)—correlated evolution with morphological change

description: Format: XLS. Title: Species sequenced in the study, behavioral data, and condition of Pendergrast’s organ on the pregenital segments. Legend: Symbols: + (present), − (absent), R (reduced). 1This species is conspecific with Acanthosoma giganteum Matsumura, recently synonymized by Tsai & Rédei [53]; the junior synonymous name, A. giganteum, is frequently cited, and its mitochondrial gene of cytochrome oxidae subunit I (mtDNA-COI) is also available from GenBank (AB368853). 2An undescribed species closely related to S. javanensis Distant. Collection abbreviation: JFT– Jing-Fu Tsai’s coll. deposited in systematic laboratory of Hokkaido University, Sapporo, Japan; NKU– Department of Zoology and Developmental Biology, Nankai University, Tianjin, China. LC099108–LC099371: Genbank accession numbers. (XLS 56 kb)
DOI: 10.6084/m9.figshare.c.3597812_d2.v1
title: Additional file 2: of Tetrapod V1R-like ora genes in an early-diverging ray-finned fish species: the canonical six ora gene repertoire of teleost fish resulted from gene loss in a larger ancestral repertoire

description: A table containing gene names, protein sizes, genomic locations, Genbank IDs, NCBI reference sequences, first publications and previously reported names of ora/v1r genes of ray-finned fish, elephant shark and African coelacanth. (XLS 44 kb)
DOI: 10.6084/m9.figshare.c.3597803_d2.v1
title: Additional file 1: Table S1. of Immune genes and divergent antimicrobial peptides in flies of the subgenus Drosophila

description: PCR primers used in expression analyses and amplification of immune gene DNA from diverse Drosophila. (XLSX 39Â kb)
DOI: 10.6084/m9.figshare.c.3597809_d4.v1
title: Additional file 5: of Maternal care in Acanthosomatinae (Insecta: Heteroptera: Acanthosomatidae)—correlated evolution with morphological change

description: Format: XLS. Title: Data matrix for character evolution. Legend: Data matrix for character evolution. Character 1, egg-nymph guarding behaviour (maternal care) [0 = absent, 1 = present, ? = missing data]. Character 2, Pendergrast’s organ [0 = absent, 1 = present, 2 = reduced]. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3597803_d3.v1
title: Additional file 5: Table S2. of Immune genes and divergent antimicrobial peptides in flies of the subgenus Drosophila

description: Net charges of DptA or DptC domains from Drosophila diptericins. Net charges were calculated using Protein Calculator v3.4 (http://protcalc.sourceforge.net/), and are given for each domain. DptC shows extensive differences at the amino acid sequence level. These differences have resulted in more extreme charges on each domain in the DptC molecule. DptC molecules generally have more negative P domains (except for D. albomicans), and more positive G domains, resulting in relatively similar net charges to DptA (except for D. albomicans). (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.c.3597812_d4.v1
title: Additional file 5: of Tetrapod V1R-like ora genes in an early-diverging ray-finned fish species: the canonical six ora gene repertoire of teleost fish resulted from gene loss in a larger ancestral repertoire

description: Tables containing dN/dS values for all codons of ora1-6 genes of ray-finned fish. (XLS 207 kb)
DOI: 10.6084/m9.figshare.c.3597809_d5.v1
title: Additional file 8: of Maternal care in Acanthosomatinae (Insecta: Heteroptera: Acanthosomatidae)—correlated evolution with morphological change

description: Format: XLS. Title: Data matrix for correlation analysis. Legend: Data matrix for correlation analysis between maternal care and Pendergrast’s organ. Character 1, egg-nymph guarding behaviour (maternal care) [0 = absent, 1 = present]. Character two, Pendergrast’s organ [0 = absent or reduced, see explanation in Methods, 1 = present]. (XLS 31 kb)
DOI: 10.6084/m9.figshare.c.3597809_d7.v1
title: Additional file 6: of Maternal care in Acanthosomatinae (Insecta: Heteroptera: Acanthosomatidae)—correlated evolution with morphological change

description: Format: nexus. Title: Data matrix for parsimonious reconstruction of the two traits (maternal care and Pendegrast’s organ) on 53 species, including species with missing data. (NEX 20 kb)
DOI: 10.6084/m9.figshare.c.3597884_d6.v1
title: Additional file 2: of Initiator tRNA genes template the 3′ CCA end at high frequencies in bacteria

description: Structurally aligned data for subset of tRNAs with CAU anticodons, also containing TFAM scores with Silva model in “aligned FastA” format. (FAS 3 MB)
DOI: 10.6084/m9.figshare.c.3597884_d7.v1
title: Additional file 8: of Initiator tRNA genes template the 3â ˛ CCA end at high frequencies in bacteria

description: Perl script for structural reannotation of 3â  ends. (TXT 5 kb)
DOI: 10.6084/m9.figshare.c.3597884_d8.v1
title: Additional file 7: of Initiator tRNA genes template the 3′ CCA end at high frequencies in bacteria

description: TFAM model used to reannotate tRNA functions in COVE format. To use this model file with TFAM, give its name as an option argument to the “-m” option. (TXT 1 MB)
DOI: 10.6084/m9.figshare.c.3597884_d9.v1
title: Additional file 3: of Initiator tRNA genes template the 3â ˛ CCA end at high frequencies in bacteria

description: Expanded description of each additional file with usage. (TXT 3 kb)
DOI: 10.6084/m9.figshare.c.3597884_d10.v1
title: Additional file 12: of Initiator tRNA genes template the 3â ˛ CCA end at high frequencies in bacteria

description: Web-browser based navigator of full dataset of results on frequencies of CCA-templating by tRNA functional class, organized by clades in NCBI taxonomy. (ZIP 548 kb)
DOI: 10.6084/m9.figshare.c.3597884_d11.v1
title: Additional file 14: of Initiator tRNA genes template the 3â ˛ CCA end at high frequencies in bacteria

description: List of FAST commands to reproduce frequency data shown in TablesÂ 1, 2, 3 and 4. (TXT 4 kb)
DOI: 10.6084/m9.figshare.c.3597884_d12.v1
title: Additional file 5: of Initiator tRNA genes template the 3â ˛ CCA end at high frequencies in bacteria

description: NCBI taxonomy data required by compute_heatmap.pl (GZ 14 MB)
DOI: 10.6084/m9.figshare.c.3598052_d1.v1
title: Additional file 3: Table S2. of DAPPER: a data-mining resource for protein-protein interactions

description: List of unique CGIDs in DAPPER. Uniprot ID is shown where CGID was not available. (XLSX 92Â kb)
DOI: 10.6084/m9.figshare.c.3598052_d2.v1
title: Additional file 2: Table S1. of DAPPER: a data-mining resource for protein-protein interactions

description: List of unique Baits in DAPPER. (XLSX 31Â kb)
DOI: 10.15468/dl.cfvw4z
title: Occurrence Download

description: A dataset containing 1578 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eucalyptus deglupta Blume"
 ]
}

 The dataset includes 1578 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037504-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3598079_d1.v1
title: Additional file 1: of Health-related quality of life in stroke patients questionnaire, short version (HRQOLISP-40): validation for its use in Colombia

description: Data base HRQOLISP-40 Colombia. Description of data: Acces date base. (ACCDB 1828 kb)
DOI: 10.6084/m9.figshare.c.3598127_d1.v1
title: Additional file 1: of Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease

description: Microbiome samples sequencing and analysis summary. Contains a table that summarizes total reads, reads passing QC, and reads successfully classified under closed and de novo OTU-picking approaches for each sample. Also provided are the dysbiosis and Shannon index values for samples under the aforementioned approaches along with median values after 10,000 rarefactions (subsamplings) of the closed-reference.biom table. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3598112_d7.v1
title: Additional file 6: of Distinct polymer physics principles govern chromatin dynamics in mouse and Drosophila topological domains

description: Quantitative 3C primer sequences. (XLS 56Â kb)
DOI: 10.5281/zenodo.14503621
title: Replication package for: "To Defer or to Differ: Experimental Evidence on the Role of Cash Transfers in Nigerian Couples' Decision–making"

description: This is the data collected, analyzed and described in the publication, "To Defer or to Differ: Experimental Evidence on the Role of Cash Transfers in Nigerian Couples’ Decision–making" accepted for publication in The Economic Journal. 

The do files to replicate all of the tables and the code used to develop the appendicies, are included.
DOI: 10.5281/zenodo.14503622
title: Replication package for: "To Defer or to Differ: Experimental Evidence on the Role of Cash Transfers in Nigerian Couples' Decision–making"

description: This is the data collected, analyzed and described in the publication, "To Defer or to Differ: Experimental Evidence on the Role of Cash Transfers in Nigerian Couples’ Decision–making" accepted for publication in The Economic Journal. 

The do files to replicate all of the tables and the code used to develop the appendicies, are included.
DOI: 10.6084/m9.figshare.c.3598127_d3.v1
title: Additional file 3: of Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease

description: De novo and rarefy analysis. Contains a table that compares results from the generalized estimating equation (GEE) analysis performed in the paper (using closed-reference OTU picking) to de novo OTU picking and rarefied closed-reference approaches. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3598136_d1.v1
title: Additional file 5: of Untargeted metabolomics unravels functionalities of phosphorylation sites in Saccharomyces cerevisiae

description: Results correlation analysis phosphomutants within one condition. (XLSX 70Â kb)
DOI: 10.6084/m9.figshare.c.3598136_d2.v1
title: Additional file 3: of Untargeted metabolomics unravels functionalities of phosphorylation sites in Saccharomyces cerevisiae

description: Results on growth rates and maximal cell densities from growth experiments. (XLSX 30Â kb)
DOI: 10.6084/m9.figshare.c.3598136_d3.v1
title: Additional file 8: of Untargeted metabolomics unravels functionalities of phosphorylation sites in Saccharomyces cerevisiae

description: Corrected p-values from untargeted metabolomics. (XLSX 1258Â kb)
DOI: 10.6084/m9.figshare.c.3598088_d18.v1
title: Additional file 3: of Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

description: SNPs with Bonferroni corrected p-values higher than 0.05 (−log10(p) ≥ 8.50) for the milk yield. Columns on table: SNP = marker name, CHR, position on bp, alleles, Beta = variation effect, SE = standard error for effect, P = p-value, minuslog10 = (−log10(p)-values), Bonferroni corrected p-value. For the rest of the columns, see explanation from http://www.ensembl.org/common/Help/Glossary?db=core . (XLSX 209 kb)
DOI: 10.6084/m9.figshare.c.3598151_d1.v1
title: Additional file 4: of GOexpress: an R/Bioconductor package for the identification and visualisation of robust gene ontology signatures through supervised learning of gene expression data

description: Compressed ZIP archive containing a sample Shiny application built on the data demonstrated in the paper. The archive also includes serialised R objects saved to files, such as the ExpressionSet described in the paper. (ZIP 7908Â kb)
DOI: 10.6084/m9.figshare.c.3598136_d4.v1
title: Additional file 6: of Untargeted metabolomics unravels functionalities of phosphorylation sites in Saccharomyces cerevisiae

description: Results self-correlation analysis phosphomutants across condition. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3598136_d5.v1
title: Additional file 10: of Untargeted metabolomics unravels functionalities of phosphorylation sites in Saccharomyces cerevisiae

description: Detailed annotation from untargeted metabolomics. (XLSX 303Â kb)
DOI: 10.6084/m9.figshare.c.3598151_d2.v1
title: Additional file 7: of GOexpress: an R/Bioconductor package for the identification and visualisation of robust gene ontology signatures through supervised learning of gene expression data

description: Scoring table for GO terms produced by GOexpress using the ExpressionSet described in the paper (see Additional file 1). (XLSX 871Â kb)
DOI: 10.6084/m9.figshare.c.3598136_d6.v1
title: Additional file 1: of Untargeted metabolomics unravels functionalities of phosphorylation sites in Saccharomyces cerevisiae

description: Additional information on mutated phosphosites. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3598256_d1.v1
title: Additional file 2: of Exploration of alternative splicing events in ten different grapevine cultivars

description: Table with all AS predicted by FindAS software. First row (beginning with '#') hold the column labels. (ZIP 1893 kb)
DOI: 10.6084/m9.figshare.c.3598325_d9.v1
title: Additional file 2: of Monoamine oxidase B gene variants associated with attention deficit hyperactivity disorder in the Indo-Caucasoid population from West Bengal

description: Protocol followed for analysis of MAOB target regions. Description: The table summarizes the protocol followed for analysis of target sites. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3598346_d12.v1
title: Additional file 12 of Changes in correlation between promoter methylation and gene expression in cancer

description: Top genes regulated by methylation for breast normal tissues, lung normal and cancerous tissues and colon cancerous tissues. (CSV 3.48 kb)
DOI: 10.6084/m9.figshare.c.3598394_d1.v1
title: Additional file 2: of Serum depletion induces changes in protein expression in the trophoblast-derived cell line HTR-8/SVneo

description: Table S3. DIGE analysis: proteins identified via MS and bioinformatics analysis from 0.5 % serum culture. HTR-8/SVneo cells were grown in medium with 10 or 0.5 % FBS for 24 h. Total protein extracts (40 μg) were labeled with either Cy2 or Cy3 and analyzed using 2D–DIGE technology in triplicate, as previously described. Protein spots were analyzed via MALDI TOF and identified using the MASCOT search engine. MW (kDa) – theoretical and experimental molecular weight in kDalton; pI ~ – theoretical pI; MS score – protein score given by Mascot; % Seq – percentage sequence coverage; Pep match – number of peptides assigned to protein; Fold FBS 0.5 %/10 % – fold optical density of protein spot (expression) of 0.5 % serum proteomes (0.5 % FBS) compared to control proteomes (10 % FBS). Relevant GO terms for molecular function and biological process, retrieved by Nextprot database and DAVID tool. (XLS 90 kb)
DOI: 10.23668/psycharchives.3008
title: Dataset for: CS as an Effect: Action-Based Evaluative Conditioning Depends on Temporal Contiguity

description: These are the data belonging to a study, in which we analyzed Evaluative Conditioning (EC) with a recently introduced S-R paradigm (Blask, Frings, & Walther, 2016). In this paradigm valence first transfers from an affective US to a response and then from this valence-laden response to a novel CS. Based on action control research, the CS in this procedure could be interpreted as an effect of the response. Hence, temporal contiguity of the valence-laden response and the CS should determine whether EC occurs. We tested this hypothesis in an experiment, in which we varied the time interval between the response and the subsequent CS. Results show that EC effects occurred only under conditions of high temporal contiguity thus supporting our assumptions. This finding sheds light on the processes underlying action-based EC in particular and evaluative learning in general.
description: In this study, we analysed Evaluative Conditioning (EC) with a recently introduced S-R paradigm [Blask et al., 2016. Doing is for feeling. Journal of Experimental Psychology: General, 145(10), 1263–1268], in which valence first transfers from an affective US to a response and then from this valence-laden response to a novel CS. Based on action control research, the CS in this procedure could be interpreted as an effect of the response. Hence, temporal contiguity of the valence-laden response and the CS should determine whether EC occurs. We tested this hypothesis in an experiment, in which we varied the time interval between the response and the subsequent CS. Results show that EC effects occurred only under conditions of high temporal contiguity thus supporting our assumptions. This finding sheds light on the processes underlying action-based EC in particular and evaluative learning in general.
description: Dataset for: Blask, K., Frings, C., & Walther, E. (2020). CS as an effect: action-based evaluative conditioning depends on temporal contiguity. Journal of Cognitive Psychology, 32(7), 661–667. https://doi.org/10.1080/20445911.2020.1810057
DOI: 10.6084/m9.figshare.c.3598394_d3.v1
title: Additional file 1: of Serum depletion induces changes in protein expression in the trophoblast-derived cell line HTR-8/SVneo

description: Table S2. Preliminary assay: proteins identified via MS and bioinformatics analysis from 0.5 % serum culture. HTR-8/SVneo cells were grown in medium with 10 or 0.5 % FBS for 24 h. Total protein extracts (0.15 mg) were separated by 7 cm 2DE gels as previously described. Protein spots were analyzed via MALDI TOF and identified using the MASCOT search engine. MW (kDa) – theoretical and experimental molecular weight in kDalton; pI ~ – theoretical pI; MS score – protein score given by Mascot; % Seq – percentage sequence coverage; Pep match – number of peptides assigned to protein; Fold FBS 0.5 %/10 % – fold optical density of protein spot (expression) of 0.5 % serum proteomes (0.5 % FBS) compared to control proteomes (10 % FBS). Relevant GO terms for molecular function and biological process, retrieved by Nextprot database and DAVID tool. (XLS 57 kb)
DOI: 10.23668/psycharchives.3009
title: Data for: The learnability consequences of Zipfian distributions: Word Segmentation is Facilitated in More Predictable Distributions

description: Data of Hebrew speaking children and adults on an auditory statistical learning experiment looking at the effect of distribution predictability on segmentation.
description: While the languages of the world differ in many respects, they share certain commonalties, which can provide insight on our shared cognition. Here, we explore the learnability consequences of one of the striking commonalities between languages. Across languages, word frequencies follow a Zipfian distribution, showing a power law relation between a word's frequency and its rank. While their source in language has been studied extensively, less work has explored the learnability consequences of such distributions for language learners. We propose that the greater predictability of words in this distribution (relative to less skewed distributions) can facilitate word segmentation, a crucial aspect of early language acquisition. To explore this, we quantify word predictability using unigram entropy, assess it across languages using naturalistic corpora of child-directed speech and then ask whether similar unigram predictability facilitates word segmentation in the lab. We find similar unigram entropy in child-directed speech across 15 languages. We then use an auditory word segmentation task to show that the unigram predictability levels found in natural language are uniquely facilitative for word segmentation for both children and adults. These findings illustrate the facilitative impact of skewed input distributions on learning and raise questions about the possible role of cognitive pressures in the prevalence of Zipfian distributions in language.
description: Dataset for: Lavi-Rotbain, O. & Arnon, I. (2022). The learnability consequences of Zipfian distributions in language. Cognition, 223. https://doi.org/10.1016/j.cognition.2022.105038
DOI: 10.6084/m9.figshare.c.3598448_d7.v1
title: Additional file 19 of Multicopy gene family evolution on primate Y chromosomes

description: XKRY maximum clade credibility tree. Summary of 95 % high posterior density interval information for tree shown in Additional file 1: Figure S7. (TREE 52.4 KB)
DOI: 10.6084/m9.figshare.c.3598448_d8.v1
title: Additional file 4 of Multicopy gene family evolution on primate Y chromosomes

description: DAZ BEAST input file. Alignment, calibration nodes, nucleotide substitution model, and specification of priors for tree shown in Additional file 1: Figure S2. (XML 139 kb)