cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5711960
title: Supplementary Data for: Human pathogenic RNA viruses establish non-competing lineages by occupying independent niches

description: <strong>Alignments</strong> ORFeome alignments (excluding stop codons) with the exception of SARS-CoV-2. <strong>Correlated Subtrees</strong> Subtrees representing all correlated-clades (genealogical lineages; GL) in Newick format. <strong>Diversity TMRCA and Skyline Plots</strong> .png files. <strong>e/d/n/o Subtrees</strong> EVA and H3N2 subtrees, evenly and diversely sampled as well as “early” and “late” subtrees for H3N2. <strong>Genealogical Trees</strong> Including global topologies (.main), subtrees, and grafted trees (.grafted). <strong>ORF References</strong> The first and last nucleotide of each ORF in the reference sequence. <strong>Redundancy Tables</strong> List of all redundant isolates and the corresponding representative in the ORFeome-unique alignment. <strong>Reference Sequences</strong> Genbank page for all reference sequences. <strong>Rooted Trees</strong> Global topologies for each virus. <strong>Ultrametric Trees </strong>For each global topology.
DOI: 10.25810/19a1-yf14
title: FIRED AUSTRALIA: South Australia

description:         This is event- and daily-level polygons for the Fire event delineation (FIRED) product for FIRED AUSTRALIA: South Australia from November 2000 to July 2021. It is derived from the MODIS MCD64A1 burned area product (see https://lpdaac.usgs.gov/products/mcd64a1v006/ for more details). The MCD64A1 is a monthly raster grid of estimated burned dates. Firedpy (www.github.com/earthlab/firedpy) is an algorithm that converts these rasters into events by stacking the entire time series into a spatial-temporal data cube, then uses an algorithm to assign event identification numbers to pixels that fit into the same 3-dimensional spatial temporal window. This particular dataset was created using a spatial parameter of 5 pixels and 11 days. The primary benefit to this dataset over others is the ability to calculate fire spread rate. For each of these products (events and daily) the event identification numbers are the same, but the event-level product has only single polygons for each entire event,
DOI: 10.5281/zenodo.4916176
title: Helsinki Deblur Challenge 2021 open photographic dataset

description: This dataset was primarily designed and captured to be used for the Helsinki Deblur Challenge 2021 but it can be used for any testing and benchmarking purposes of image deblurring algorithms. The dataset contains photographs of random strings of text with varying levels of blur caused by misfocusing the camera. Each photo has both a blurred and sharp version. Why strings of text as targets? This is to enable quantitative measurement of deconvolution quality using an Optical Characted Recognition (OCR) algorithm in the Helsinki Deblur Challenge 2021. The images are split into 20 separate zip files according to the level of blur. Each one of the zip files contains two folders, one for each of the different fonts used (Verdana and Times). In both font folders you find one folder named CAM1 (Camera 1) with the sharp images and one named CAM2 (Camera 2) with the blurred images. Each one of the CAM folders holds 100 images of the text targets and 3 images of technical targets for estimating the point spread function (PSF). Each one of the text target images is accompanied by a text file (same file name but .txt extension) containing the correct transcription of that particular text target. An example image with one sharp-blurred pair of each one of the focus steps is also provided here for preview. A more detailed description of the dataset can be found here: http://arxiv.org/abs/2105.10233 And the test dataset used for the HDC2021 can be found here: https://doi.org/10.5281/zenodo.5713637 Here is a link to the official webpage of the Helsinki Deblur Challenge 2021: https://www.fips.fi/HDC2021.php
DOI: 10.5281/zenodo.4772279
title: Helsinki Deblur Challenge 2021 open photographic dataset

description: This dataset was primarily designed and captured to be used for the Helsinki Deblur Challenge 2021 but it can be used for any testing and benchmarking purposes of image deblurring algorithms. The dataset contains photographs of random strings of text with varying levels of blur caused by misfocusing the camera. Each photo has both a blurred and sharp version. Why strings of text as targets? This is to enable quantitative measurement of deconvolution quality using an Optical Characted Recognition (OCR) algorithm in the Helsinki Deblur Challenge 2021. The images are split into 20 separate zip files according to the level of blur. Each one of the zip files contains two folders, one for each of the different fonts used (Verdana and Times). In both font folders you find one folder named CAM1 (Camera 1) with the sharp images and one named CAM2 (Camera 2) with the blurred images. Each one of the CAM folders holds 100 images of the text targets and 3 images of technical targets for estimating the point spread function (PSF). Each one of the text target images is accompanied by a text file (same file name but .txt extension) containing the correct transcription of that particular text target. An example image with one sharp-blurred pair of each one of the focus steps is also provided here for preview. A more detailed description of the dataset can be found here: http://arxiv.org/abs/2105.10233 And the test dataset used for the HDC2021 can be found here: https://doi.org/10.5281/zenodo.5713637 Here is a link to the official webpage of the Helsinki Deblur Challenge 2021: https://www.fips.fi/HDC2021.php
DOI: 10.25810/hpxc-qx41
title: FIRED BURUNDI

description:                 This is event- and daily-level polygons for the Fire event delineation (FIRED) product for Burundi from November 2000 to July 2021. It is derived from the MODIS MCD64A1 burned area product (see https://lpdaac.usgs.gov/products/mcd64a1v006/ for more details). The MCD64A1 is a monthly raster grid of estimated burned dates. Firedpy (www.github.com/earthlab/firedpy) is an algorithm that converts these rasters into events by stacking the entire time series into a spatial-temporal data cube, then uses an algorithm to assign event identification numbers to pixels that fit into the same 3-dimensional spatial temporal window. This particular dataset was created using a spatial parameter of 5 pixels and 11 days. The primary benefit to this dataset over others is the ability to calculate fire spread rate. For each of these products (events and daily) the event identification numbers are the same, but the event-level product has only single polygons for each entire event,
DOI: 10.6084/m9.figshare.16992013
title: Supplemental Data_Exercise Reduces the Protein Abundance of TXNIP and Its Interacting Partner REDD1 in Skeletal Muscle: Potential Role for a PKA-Mediated Mechanism

description: Supplemental Data for the Manuscript entitled, "Exercise Reduces the Protein Abundance of TXNIP and Its Interacting Partner REDD1 in Skeletal Muscle: Potential Role for a PKA-Mediated Mechanism".
DOI: 10.6084/m9.figshare.16992013.v5
title: Supplemental Data_Exercise Reduces the Protein Abundance of TXNIP and Its Interacting Partner REDD1 in Skeletal Muscle: Potential Role for a PKA-Mediated Mechanism

description: Supplemental Data for the Manuscript entitled, "Exercise Reduces the Protein Abundance of TXNIP and Its Interacting Partner REDD1 in Skeletal Muscle: Potential Role for a PKA-Mediated Mechanism".
DOI: 10.6084/m9.figshare.16992013.v4
title: Supplemental Data_Exercise Reduces the Protein Abundance of TXNIP and Its Interacting Partner REDD1 in Skeletal Muscle: Potential Role for a PKA-Mediated Mechanism

description: Supplemental Data for the Manuscript entitled, "Exercise Reduces the Protein Abundance of TXNIP and Its Interacting Partner REDD1 in Skeletal Muscle: Potential Role for a PKA-Mediated Mechanism".
DOI: 10.5281/zenodo.5714555
title: Impact of heat stress on the fitness outcomes of symbiotic infection in aphids: a meta-analysis

description: This is the dataset for the article "<em><strong>Impact of heat stress on the fitness outcomes of symbiotic infection in aphids: a meta-analysis</strong></em>". Beneficial symbiosis shape their host eco-evolutionary responses. Here we show how the responses of insect-microbe associations may be modulated by rising temperatures. The outcome of the symbiotic association is therefore temperature-dependent, but also trait-dependent. We show the importance of better understanding the cost-benefits balance of insect-microbe associations faced with climate change.
DOI: 10.5281/zenodo.5714554
title: Impact of heat stress on the fitness outcomes of symbiotic infection in aphids: a meta-analysis

description: This is the dataset for the article "<em><strong>Impact of heat stress on the fitness outcomes of symbiotic infection in aphids: a meta-analysis</strong></em>". Beneficial symbiosis shape their host eco-evolutionary responses. Here we show how the responses of insect-microbe associations may be modulated by rising temperatures. The outcome of the symbiotic association is therefore temperature-dependent, but also trait-dependent. We show the importance of better understanding the cost-benefits balance of insect-microbe associations faced with climate change.
DOI: 10.15468/fz53ta
title: New species of flea-toad, genus Brachycephalus (Anura: Brachycephalidae) from the Atlantic Forest of Espírito Santo, Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Almeida-Silva, Diego, Silva-Soares, Thiago, Rodrigues, Miguel Trefaut, Verdade, Vanessa Kruth (2021): New species of flea-toad, genus Brachycephalus (Anura: Brachycephalidae) from the Atlantic Forest of Espírito Santo, Brazil. Zootaxa 5068 (4): 517-532, DOI: https://doi.org/10.11646/zootaxa.5068.4.3
DOI: 10.15468/kknmnd
title: Review of the millipede tribe Polydrepanini, with the description of a new species from Kerala state, southern India (Diplopoda, Polydesmida, Paradoxosomatidae, Alogolykinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Golovatch, Sergei I., Aswathy, Mathilakath Dasan, Bhagirathan, Usha, Sudhikumar, Ambalaparambil Vasu (2021): Review of the millipede tribe Polydrepanini, with the description of a new species from Kerala state, southern India (Diplopoda, Polydesmida, Paradoxosomatidae, Alogolykinae). Zootaxa 5068 (4): 485-516, DOI: https://doi.org/10.11646/zootaxa.5068.4.2
DOI: 10.15468/p8nj9w
title: Viverridae

description: This dataset contains the digitized treatments in Plazi based on the original book chapter Don E. Wilson, Russell A. Mittermeier (2009): Viverridae. In: Handbook of the Mammals of the World – Volume 1 Carnivores. Barcelona: Lynx Edicions: 174-232, DOI: http://doi.org/10.5281/zenodo.5714564
DOI: 10.15468/58yjm6
title: New combinations and re-lectotypification in the genus Imbralyx (Fabaceae: Millettieae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Song, Zhu-Qiu (2021): New combinations and re-lectotypification in the genus Imbralyx (Fabaceae: Millettieae). Phytotaxa 525 (3): 223-231, DOI: 10.11646/phytotaxa.525.3.4
DOI: 10.17638/datacat.liverpool.ac.uk/1536
title: Data for "Subject-specific muscle properties from diffusion tensor imaging significantly improve the accuracy of musculoskeletal models"
DOI: 10.5281/zenodo.5668387
title: GeoERA RESOURCE CHAKA data set which contains time series of precipitation and discharge of springs in the CHAKA pilot areas (D5.5)

description: Dataset which contains time series of precipitation and discharge of springs in the pilot areas of the CHAKA work package of the GeoERA RESOURCE project. The file contains precipitation and spring discharge data of 16 pilot areas in the Karst & Chalk work package. A description of the application of the dataset for the characterisation of the typology of karst systems in given in the D5.3 deliverable of GeoERA RESOURCE of which the pdf is provided. Further information about the CHAKA results can be assessed though the webservices of the European Geological Data Infrastructure (EGDI).
DOI: 10.5281/zenodo.5668386
title: GeoERA RESOURCE CHAKA data set which contains time series of precipitation and discharge of springs in the CHAKA pilot areas (D5.5)

description: Dataset which contains time series of precipitation and discharge of springs in the pilot areas of the CHAKA work package of the GeoERA RESOURCE project. The file contains precipitation and spring discharge data of 16 pilot areas in the Karst & Chalk work package. A description of the application of the dataset for the characterisation of the typology of karst systems in given in the D5.3 deliverable of GeoERA RESOURCE of which the pdf is provided. Further information about the CHAKA results can be assessed though the webservices of the European Geological Data Infrastructure (EGDI).
DOI: 10.23728/b2share.a1b9e55e087b45da8bc3982b0be9422e
title: Participant dataset submitted by Phylomedb_v5

description: Participant dataset submitted by participant Phylomedb_v5 for 'Quest for Orthologs - 2020 Reference Proteomes' benchmarking event.
DOI: 10.15468/u2ww3x
title: Anatomical study of two previously undescribed specimens of Clevosaurus hudsoni (Lepidosauria: Rhynchocephalia) from Cromhall Quarry, UK, aided by computed tomography, yields additional information on the skeleton and hitherto undescribed bones

description: This dataset contains the digitized treatments in Plazi based on the original journal article O, Aileen, Brien, Whiteside, David I., Marshall, John E. A. (2018): Anatomical study of two previously undescribed specimens of Clevosaurus hudsoni (Lepidosauria: Rhynchocephalia) from Cromhall Quarry, UK, aided by computed tomography, yields additional information on the skeleton and hitherto undescribed bones. Zoological Journal of the Linnean Society 183: 163-195, DOI: 10.1093/zoolinnean/zlx087
DOI: 10.5281/zenodo.5530440
title: Apotheker/in Arends, Johannes

description: Questionnaire/s and index cards, partly selected enclosures regarding the history of a German pharmacy (Fragebogen und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope).
DOI: 10.5066/f7n29w5m
title: Data tables summarizing the source-specific estimated water withdrawals in Florida by category, county, and water management district, 2015.

description: In 2015, the total amount of water withdrawn in Florida was estimated at 15,319 million gallons per day (Mgal/d). This includes 9,598 Mgal/d of saline water and 5,721 Mgal/d of fresh water. Groundwater accounted for 3,604 Mgal/d and surface water accounted for 2,117 Mgal/d of the fresh water withdrawals. Surface water accounted for 9,400 Mgal/d and groundwater 198 Mgal/d of the saline water withdrawals. Water withdrawals are also tabulated by category (public supply, domestic self-supplied, commercial-industrial-mining self-supplied, agricultural irrigation, recreational-landscape irrigation, and power generation) and water management district (Northwest Florida, St Johns River, South Florida, Southwest Florida, and Suwannee River).
DOI: 10.15468/hps74n
title: Virotia azurea (Proteaceae: Macadamieae), a striking new species endemic to New Caledonia and notes on V. francii and V. leptophylla

description: This dataset contains the digitized treatments in Plazi based on the original journal article Hopkins, Helen C. F., Pillon, Yohan (2020): Virotia azurea (Proteaceae: Macadamieae), a striking new species endemic to New Caledonia and notes on V. francii and V. leptophylla. Candollea 75 (1): 89-98, DOI: 10.15553/c2020v751a9
DOI: 10.5281/zenodo.5552652
title: Anonymous repo hosting code and data for our submission

description: Anonymous repository hosting code and data.
DOI: 10.5281/zenodo.5552651
title: Anonymous repo hosting code and data for our submission

description: Anonymous repository hosting code and data.
DOI: 10.5281/zenodo.5714729
title: Apotheker/in Agner, Gertrud

description: Questionnaire/s and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Fragebogen und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/
DOI: 10.25810/q9z9-6r30
title: FIRED ESWATINI

description:  This is event- and daily-level polygons for the Fire event delineation (FIRED) product for Eswatini from November 2000 to July 2021. It is derived from the MODIS MCD64A1 burned area product (see https://lpdaac.usgs.gov/products/mcd64a1v006/ for more details). The MCD64A1 is a monthly raster grid of estimated burned dates. Firedpy (www.github.com/earthlab/firedpy) is an algorithm that converts these rasters into events by stacking the entire time series into a spatial-temporal data cube, then uses an algorithm to assign event identification numbers to pixels that fit into the same 3-dimensional spatial temporal window. This particular dataset was created using a spatial parameter of 5 pixels and 11 days. The primary benefit to this dataset over others is the ability to calculate fire spread rate. For each of these products (events and daily) the event identification numbers are the same, but the event-level product has only single polygons for each entire event,
DOI: 10.15468/brrvyu
title: Three new species of the genus Aemene Walker (Lepidoptera: Erebidae: Arctiinae) from the Himalayas

description: This dataset contains the digitized treatments in Plazi based on the original journal article Volynkin, Anton V. (2021): Three new species of the genus Aemene Walker (Lepidoptera: Erebidae: Arctiinae) from the Himalayas. Zootaxa 5068 (4): 533-546, DOI: https://doi.org/10.11646/zootaxa.5068.4.4
DOI: 10.5281/zenodo.5532515
title: Apotheker/in Agner, Gertrud

description: Questionnaire/s and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Fragebogen und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/
DOI: 10.25810/kqcw-db61
title: FIRED MALAWI

description: This is event- and daily-level polygons for the Fire event delineation (FIRED) product for Malawi from November 2000  to July 2021. It is derived from the MODIS MCD64A1 burned area product (see https://lpdaac.usgs.gov/products/mcd64a1v006/ for more details). The MCD64A1 is a monthly raster grid of estimated burned dates. Firedpy (www.github.com/earthlab/firedpy) is an algorithm that converts these rasters into events by stacking the entire time series into a spatial-temporal data cube, then uses an algorithm to assign event identification numbers to pixels that fit into the same 3-dimensional spatial temporal window. This particular dataset was created using a spatial parameter of 5 pixels and 11 days. The primary benefit to this dataset over others is the ability to calculate fire spread rate. For each of these products (events and daily) the event identification numbers are the same, but the event-level product has only single polygons for each entire event, while the daily product has separate polygons for each date per event.  See the accompanying metadata files for the statistics provided by each data set. See the associated paper for more details on the methods and more:

Balch, J.K.; St. Denis, L.A.; Mahood, A.L.; Mietkiewicz, N.P.; Williams, T.M.; McGlinchy, J.; Cook, M.C. FIRED (Fire Events Delineation): An Open, Flexible Algorithm and Database of US Fire Events Derived from the MODIS Burned Area Product (2001–2019). Remote Sens. 2020, 12, 3498. https://doi.org/10.3390/rs12213498
DOI: 10.5281/zenodo.5713544
title: Data to reproduce the results presented in Lake et al. 2021. Journal of Soils and Sediments, https://doi.org/10.1007/s11368-021-03107-6 ("High frequency un-mixing of soil samples using a submerged spectrophotometer in a laboratory setting – implications for sediment fingerprinting")

description: This repository contains data on (1) the absorbance data and (2) the measured concentrations, to reproduce computational results as presented in:<br> "High frequency un-mixing of soil samples using a submerged spectrophotometer in a laboratory setting – implications for sediment fingerprinting". <br> 1. Absorbance data (200-730 nm wavelengths): * Average absorbance compensated for measured concentrations (average absorbance value per concentration)<br> * Average absorbance compensated for theoretical concentrations (average absorbance value per concentration)<br> * Average raw absorbance measured (average absorbance value per concentration)<br> * Raw absorbance measured (all absorbance values for all concentrations) Data in all 3 files is indicated per soil sample / mixture, with corresponding fraction(s) of soil sample(s) and corresponding (theoretical) input concentration.<br> <br> 2. Measured concentration data: * Measured concentration (average concentrations, tested for all experiments and for all theoretical input concentrations)
description: This research was funded by the Luxembourg National Research Fund (FNR) (PAINLESS project C17/SR/11699372).
description: {"references": ["Lake et al. 2021. High frequency un-mixing of soil samples using a submerged spectrophotometer in a laboratory setting \u2013 implications for sediment fingerprinting. Journal of Soils and Sediments. (https://doi.org/10.1007/s11368-021-03107-6)"]}
DOI: 10.5281/zenodo.5713543
title: Data to reproduce the results presented in Lake et al. 2021. Journal of Soils and Sediments, https://doi.org/10.1007/s11368-021-03107-6 ("High frequency un-mixing of soil samples using a submerged spectrophotometer in a laboratory setting – implications for sediment fingerprinting")

description: This repository contains data on (1) the absorbance data and (2) the measured concentrations, to reproduce computational results as presented in:<br> "High frequency un-mixing of soil samples using a submerged spectrophotometer in a laboratory setting – implications for sediment fingerprinting". <br> 1. Absorbance data (200-730 nm wavelengths): * Average absorbance compensated for measured concentrations (average absorbance value per concentration)<br> * Average absorbance compensated for theoretical concentrations (average absorbance value per concentration)<br> * Average raw absorbance measured (average absorbance value per concentration)<br> * Raw absorbance measured (all absorbance values for all concentrations) Data in all 3 files is indicated per soil sample / mixture, with corresponding fraction(s) of soil sample(s) and corresponding (theoretical) input concentration.<br> <br> 2. Measured concentration data: * Measured concentration (average concentrations, tested for all experiments and for all theoretical input concentrations)
description: This research was funded by the Luxembourg National Research Fund (FNR) (PAINLESS project C17/SR/11699372).
description: {"references": ["Lake et al. 2021. High frequency un-mixing of soil samples using a submerged spectrophotometer in a laboratory setting \u2013 implications for sediment fingerprinting. Journal of Soils and Sediments. (https://doi.org/10.1007/s11368-021-03107-6)"]}
DOI: 10.5281/zenodo.5714740
title: Düsseldorf, Hansa-Apotheke: Loewe, Hugo

description: Questionnaire/s and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Fragebogen und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/
DOI: 10.15468/5js7rz
title: Morphology of the lectotype of Chelodina oblonga Gray 1841 (Testudines: Chelidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Smales, Ian (2021): Morphology of the lectotype of Chelodina oblonga Gray 1841 (Testudines: Chelidae). Zootaxa 5068 (4): 547-571, DOI: https://doi.org/10.11646/zootaxa.5068.4.5