cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5892775.v1
title: Supporting Information for: Imaging the Magmatic and Hydrothermal Systems of a Restless Rift Caldera at Aluto, Ethiopia

description: Here we provide an overview to:S1. The method used to constrain a local 1-Dimensional P- and S-wave seismic velocity model that is used for subsequent 3-D tomography and hypocenter relocations.S2. How optimum regularization parameters are chosen for FMTOMO inversions and the statistics related to the data fit of the solution models.S3. How 95% confidence regions are calculated for event relocations.S4. How synthetic ‘checkerboard’ resolution tests are used to assess the robustness and resolution of the recovered velocity models<br>The data files containing;The final velocity and velocity solution models:VpModel.outVsModel.outVpVsModel.outThe relocated hypocenters with uncertainties:EQ_Hypocenters.out<br>The Figures as outlined in the paper.<br>This supporting material supplements the research article: Imaging the Magmatic and Hydrothermal Systems of a Restless Rift Caldera at Aluto, Ethiopia. <br>It has been submitted to Geophysical Research Letters, Feb 2018.
DOI: 10.6084/m9.figshare.5892748.v1
title: ‘Best location’ OA classification tests

description: This data describes the hierarchical checks on data and attributes from the various OA web services used to derive a "best location" classification for scholarly works
DOI: 10.6084/m9.figshare.5892490
title: Testing the relative importance of intertidal seaweeds as ecosystem engineers across tidal heights

description: Backgound data pertaining preliminary trials and statistical analyses in the manuscript.
DOI: 10.6084/m9.figshare.5892490.v1
title: Testing the relative importance of intertidal seaweeds as ecosystem engineers across tidal heights

description: Backgound data pertaining preliminary trials and statistical analyses in the manuscript.
DOI: 10.6084/m9.figshare.5891962
title: Moderation of irrational beliefs in the relationship between changes in pain and changes in health

description: The dataset contains measures of pain intensity (numerical rating scale), health status (Short-Form 36), and irrational thinking (General Attitudes and Beliefs Scale) of patients with chronic pain. The data is longitudinal (6 months from assessments)
DOI: 10.6084/m9.figshare.5891962.v1
title: Moderation of irrational beliefs in the relationship between changes in pain and changes in health

description: The dataset contains measures of pain intensity (numerical rating scale), health status (Short-Form 36), and irrational thinking (General Attitudes and Beliefs Scale) of patients with chronic pain. The data is longitudinal (6 months from assessments)
DOI: 10.6084/m9.figshare.5891959
title: HuH-7 mRNA expression with/without treatment of exosomes

description: HuH-7AR mRNA expression with/without treatment of exosomes from HuH7
DOI: 10.6084/m9.figshare.5891959.v1
title: HuH-7 mRNA expression with/without treatment of exosomes

description: HuH-7AR mRNA expression with/without treatment of exosomes from HuH7
DOI: 10.5517/ccdc.csd.cc252v26
title: CCDC 1998727: Experimental Crystal Structure Determination

description: Related Article: Cem B. Yildiz, Kinga I. Leszczyńska, Sandra González-Gallardo, Michael Zimmer, Akin Azizoglu, Till Biskup, Christopher W. M. Kay, Volker Huch, Henry S. Rzepa, David Scheschkewitz|2020|Angew.Chem.,Int.Ed.|59|15087|doi:10.1002/anie.202006283
DOI: 10.5517/ccdc.csd.cc252v37
title: CCDC 1998728: Experimental Crystal Structure Determination

description: Related Article: Cem B. Yildiz, Kinga I. Leszczyńska, Sandra González-Gallardo, Michael Zimmer, Akin Azizoglu, Till Biskup, Christopher W. M. Kay, Volker Huch, Henry S. Rzepa, David Scheschkewitz|2020|Angew.Chem.,Int.Ed.|59|15087|doi:10.1002/anie.202006283
DOI: 10.5517/ccdc.csd.cc252v48
title: CCDC 1998729: Experimental Crystal Structure Determination

description: Related Article: Cem B. Yildiz, Kinga I. Leszczyńska, Sandra González-Gallardo, Michael Zimmer, Akin Azizoglu, Till Biskup, Christopher W. M. Kay, Volker Huch, Henry S. Rzepa, David Scheschkewitz|2020|Angew.Chem.,Int.Ed.|59|15087|doi:10.1002/anie.202006283
DOI: 10.5517/ccdc.csd.cc252v59
title: CCDC 1998730: Experimental Crystal Structure Determination

description: Related Article: Cem B. Yildiz, Kinga I. Leszczyńska, Sandra González-Gallardo, Michael Zimmer, Akin Azizoglu, Till Biskup, Christopher W. M. Kay, Volker Huch, Henry S. Rzepa, David Scheschkewitz|2020|Angew.Chem.,Int.Ed.|59|15087|doi:10.1002/anie.202006283
DOI: 10.5517/ccdc.csd.cc252v6b
title: CCDC 1998731: Experimental Crystal Structure Determination

description: Related Article: Cem B. Yildiz, Kinga I. Leszczyńska, Sandra González-Gallardo, Michael Zimmer, Akin Azizoglu, Till Biskup, Christopher W. M. Kay, Volker Huch, Henry S. Rzepa, David Scheschkewitz|2020|Angew.Chem.,Int.Ed.|59|15087|doi:10.1002/anie.202006283
DOI: 10.5517/ccdc.csd.cc253dvk
title: CCDC 1999278: Experimental Crystal Structure Determination

description: Related Article: Linli Zhang, Zheng Wang, Zhaobin Han, Kuiling Ding|2020|Angew.Chem.,Int.Ed.|59|15565|doi:10.1002/anie.202006383
DOI: 10.6084/m9.figshare.5891833
title: Future weather sorghum biogeochemistry data

description: DAYCENT model output for soil C, greenhouse gas flux and aboveground biomass for sorghum. Simulations performed based on soil data from eastern NM, and performed with downscaled future weather data.
DOI: 10.6084/m9.figshare.5891833.v1
title: Future weather sorghum biogeochemistry data

description: DAYCENT model output for soil C, greenhouse gas flux and aboveground biomass for sorghum. Simulations performed based on soil data from eastern NM, and performed with downscaled future weather data.
DOI: 10.6084/m9.figshare.5891623
title: Raw data Caudron et al PLOS One 2018 doi:10.1371/journal.pone.0193174Caudron S, Ceyte H, Barraud P-A, Cian C,Guerraz M (2018) Perception of body movementwhen real and simulated displacements arecombined. PLoS ONE 13(3): e0193174. https://doi.org/10.1371/journal.pone.0193174

description: Data set of the folowing publication :<br><br>Caudron S, Ceyte H, Barraud P-A, Cian C, Guerraz M. Perception of body movement when real and simulated displacements are combined. PLOS One 2018. <br><br>doi:10.1371/journal.pone.0193174
DOI: 10.6084/m9.figshare.5891623.v1
title: Raw data Caudron et al PLOS One 2018 doi:10.1371/journal.pone.0193174

description: Data set of the folowing publication :<br><br>Caudron S, Ceyte H, Barraud P-A, Cian C, Guerraz M. Perception of body movement when real and simulated displacements are combined. PLOS One 2018. <br><br>doi:10.1371/journal.pone.0193174
DOI: 10.6084/m9.figshare.5891509
title: Lichen associated bacteria 16S rRNA Illumina sequences

description: Demultiplexed paired read Illumina 16SrRNA tag sequencing data for bacteria associated with different lichen species or in seawater. The data also includes 1 mock bacterial community comprised of 20 bacterial species. The associated text file gives the correspondence between the illumina paired read file numbers and the lichen sample, seawater or mock community identity.<br>
DOI: 10.6084/m9.figshare.5891509.v1
title: Lichen associated bacteria 16S rRNA Illumina sequences

description: Demultiplexed paired read Illumina 16SrRNA tag sequencing data for bacteria associated with different lichen species or in seawater. The data also includes 1 mock bacterial community comprised of 20 bacterial species. The associated text file gives the correspondence between the illumina paired read file numbers and the lichen sample, seawater or mock community identity.<br>
DOI: 10.6084/m9.figshare.5891401
title: Supplementary Material for: miR-499 Ameliorates Podocyte Injury by Targeting Calcineurin in Minimal Change Disease

description: <b><i>Background:</i></b> Podocyte injury is a hallmark of minimal change disease (MCD). Calcineurin inhibitors have been widely used in the current treatment of MCD, and miR-499 may target calcineurin. We aimed to study the function of miR-499 in MCD and test whether miR-499 delivery can improve MCD. <b><i>Methods:</i></b> An MCD mouse model was generated using puromycin aminonucleoside (PAN). MiR-499 was delivered using lentiviruses. Biochemical indicators including serum albumin, triglyceride, cholesterol, and 24-h urine protein were determined. Targets of miR-499 were confirmed using reporter gene activity assays. The ultrastructure of podocytes was analyzed using transmission electron microscopy. <b><i>Results:</i></b> MiR-499 significantly improved MCD-related symptoms and signs. Foot-process effacement was caused by PAN and partially reversed by miR-499. We identified that both CnAα and CnAβ were targets of miR-499, and were overexpressed in the presence of PAN. However, miR-499 reduced the expression of CnAα and CnAβ, leading to a decreased activity of calcineurin signaling in mouse podocytes in vitro and in vivo. In addition, miR-499 recovered PAN-induced reduction of cell viability. <b><i>Conclusions:</i></b> MiR-499 ameliorated podocyte injury by targeting CnAα and CnAβ in a PAN-induced MCD mouse model. Delivery of miR-499 can be a novel strategy for MCD treatment.
DOI: 10.6084/m9.figshare.5891401.v1
title: Supplementary Material for: miR-499 Ameliorates Podocyte Injury by Targeting Calcineurin in Minimal Change Disease

description: <b><i>Background:</i></b> Podocyte injury is a hallmark of minimal change disease (MCD). Calcineurin inhibitors have been widely used in the current treatment of MCD, and miR-499 may target calcineurin. We aimed to study the function of miR-499 in MCD and test whether miR-499 delivery can improve MCD. <b><i>Methods:</i></b> An MCD mouse model was generated using puromycin aminonucleoside (PAN). MiR-499 was delivered using lentiviruses. Biochemical indicators including serum albumin, triglyceride, cholesterol, and 24-h urine protein were determined. Targets of miR-499 were confirmed using reporter gene activity assays. The ultrastructure of podocytes was analyzed using transmission electron microscopy. <b><i>Results:</i></b> MiR-499 significantly improved MCD-related symptoms and signs. Foot-process effacement was caused by PAN and partially reversed by miR-499. We identified that both CnAα and CnAβ were targets of miR-499, and were overexpressed in the presence of PAN. However, miR-499 reduced the expression of CnAα and CnAβ, leading to a decreased activity of calcineurin signaling in mouse podocytes in vitro and in vivo. In addition, miR-499 recovered PAN-induced reduction of cell viability. <b><i>Conclusions:</i></b> MiR-499 ameliorated podocyte injury by targeting CnAα and CnAβ in a PAN-induced MCD mouse model. Delivery of miR-499 can be a novel strategy for MCD treatment.
DOI: 10.6084/m9.figshare.5891356
title: Bird species webpage representation using vernacular and scientific species names

description: The dataset contains a list of vernacular bird species names, scientific bird species names, other existing scientific synonyms and estimates of the number of webpages associated with each name. An associated file providing a description of the data and the methodology used to obtain is also provided.
DOI: 10.6084/m9.figshare.5891356.v2
title: Bird species webpage representation using vernacular and scientific species names

description: The dataset contains a list of vernacular bird species names, scientific bird species names, other existing scientific synonyms and estimates of the number of webpages associated with each name. An associated file providing a description of the data and the methodology used to obtain is also provided.
DOI: 10.6084/m9.figshare.5891356.v1
title: Webpage representation of bird species using vernacular and scientific species names

description: The dataset contains a list of vernacular bird species names, scientific bird species names, other existing scientific synonyms and estimates of the number of webpages associated with each name. An associated file providing a description of the data and the methodology used to obtain is also provided.
DOI: 10.6084/m9.figshare.5891260
title: Additional file 1: of Affinity proteomic profiling of plasma for proteins associated to area-based mammographic breast density

description: Tables S1-S2 Complete list of antibodies included in serum bead array (SBA) 1 and 2 (sheet 1 and 2). Table S7 Summary of antibody validation (sheet 3). (XLSX 71 kb)
DOI: 10.6084/m9.figshare.5891260.v1
title: Additional file 1: of Affinity proteomic profiling of plasma for proteins associated to area-based mammographic breast density

description: Tables S1-S2 Complete list of antibodies included in serum bead array (SBA) 1 and 2 (sheet 1 and 2). Table S7 Summary of antibody validation (sheet 3). (XLSX 71 kb)
DOI: 10.5519/qd.wtpob99l
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (995 records)
DOI: 10.6084/m9.figshare.5891146
title: MOESM2 of Rasch analysis of the Trypophobia Questionnaire

description: Additional file 2. Raw data from the survey. Dataset includes demographic data and responses to the Trypophobia Questionnaire from 582 healthy native Japanese speakers who were recruited via online.
DOI: 10.6084/m9.figshare.5891146.v1
title: MOESM2 of Rasch analysis of the Trypophobia Questionnaire

description: Additional file 2. Raw data from the survey. Dataset includes demographic data and responses to the Trypophobia Questionnaire from 582 healthy native Japanese speakers who were recruited via online.
DOI: 10.6084/m9.figshare.5891140
title: MOESM1 of Current and future distribution of Aedes aegypti and Aedes albopictus (Diptera: Culicidae) in WHO Eastern Mediterranean Region

description: Additional file 1. Presence of Aedes aegypti and Aedes albopictus and case data of Dengue, chikungunya and yellow fever in the EMR.
DOI: 10.6084/m9.figshare.5891140.v1
title: MOESM1 of Current and future distribution of Aedes aegypti and Aedes albopictus (Diptera: Culicidae) in WHO Eastern Mediterranean Region

description: Additional file 1. Presence of Aedes aegypti and Aedes albopictus and case data of Dengue, chikungunya and yellow fever in the EMR.
DOI: 10.6084/m9.figshare.5891065
title: Additional file 6: Table S6. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

description: Relative transcript levels of a set of isoforms corresponding to five genes expressed in the gluteus medius muscle of HIGH and LOW pigs identified with the CLC Bio and STAR/RSEM/DESeq2 pipelines. (XLSX 160 kb)
DOI: 10.6084/m9.figshare.5891065.v1
title: Additional file 6: Table S6. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

description: Relative transcript levels of a set of isoforms corresponding to five genes expressed in the gluteus medius muscle of HIGH and LOW pigs identified with the CLC Bio and STAR/RSEM/DESeq2 pipelines. (XLSX 160 kb)
DOI: 10.6084/m9.figshare.5891047
title: Additional file 5: Table S5. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

description: Differentially expressed (P-value
DOI: 10.6084/m9.figshare.5891047.v1
title: Additional file 5: Table S5. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

description: Differentially expressed (P-value
DOI: 10.6084/m9.figshare.5891029
title: Additional file 4: Table S4. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

description: Classification of alternative splicing (AS) events detected in the porcine gluteus medius muscle with the SUPPA and Splicing Express softwares. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.5891029.v1
title: Additional file 4: Table S4. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

description: Classification of alternative splicing (AS) events detected in the porcine gluteus medius muscle with the SUPPA and Splicing Express softwares. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.5891005
title: Additional file 3: Table S3. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

description: Alternatively spliced mRNA isoforms identified in the porcine gluteus medius muscle of Duroc pigs by CLC Bio and/or STAR/RSEM/ DESEq2. (XLSX 569 kb)
DOI: 10.6084/m9.figshare.5891005.v1
title: Additional file 3: Table S3. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

description: Alternatively spliced mRNA isoforms identified in the porcine gluteus medius muscle of Duroc pigs by CLC Bio and/or STAR/RSEM/ DESEq2. (XLSX 569 kb)
DOI: 10.6084/m9.figshare.5890987
title: Additional file 2: Table S2. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

description: Primers employed in the validation of four differentially expressed isoforms by RT-qPCR. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.5890987.v1
title: Additional file 2: Table S2. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

description: Primers employed in the validation of four differentially expressed isoforms by RT-qPCR. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.5890978
title: Additional file 1: of Monitoring of mechanical errors and their dosimetric impact throughout the course of non-coplanar continuous volumetric-modulated arc therapy

description: Dataset supporting our findings. (XLSX 108Â kb)
DOI: 10.6084/m9.figshare.5890978.v1
title: Additional file 1: of Monitoring of mechanical errors and their dosimetric impact throughout the course of non-coplanar continuous volumetric-modulated arc therapy

description: Dataset supporting our findings. (XLSX 108Â kb)
DOI: 10.6084/m9.figshare.5890969
title: Additional file 1: Table S1. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

description: Distribution of the 56 animals sequenced by RNA-seq in the 5 half-sib families reported by Gallardo et al. [13]. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.5890969.v1
title: Additional file 1: Table S1. of Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles

description: Distribution of the 56 animals sequenced by RNA-seq in the 5 half-sib families reported by Gallardo et al. [13]. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.5890951
title: MOESM2 of Clinical proteomic analysis of scrub typhus infection

description: Additional file 2: Table 1. Total list of identified proteins.
DOI: 10.6084/m9.figshare.5890951.v1
title: MOESM2 of Clinical proteomic analysis of scrub typhus infection

description: Additional file 2: Table 1. Total list of identified proteins.
DOI: 10.6084/m9.figshare.5890918
title: Distribution: NuGetTest.uninstallOk duration

description: Distribution: NuGetTest.uninstallOk duration<br>Windows 10<br>1000 runs
DOI: 10.6084/m9.figshare.5890918.v1
title: Distribution: NuGetTest.uninstallOk duration

description: Distribution: NuGetTest.uninstallOk duration<br>Windows 10<br>1000 runs
DOI: 10.6084/m9.figshare.5890888
title: Events detected by the Global Flood Monitor

description: This dataset shows the events found by the detection algorithm . The dataset includes the the area in which the event is detected including its geonameid, the event onset and the event end.<br>
DOI: 10.6084/m9.figshare.5890879
title: Supplementary Material for: Altered Long Noncoding RNA and Messenger RNA Expression in Experimental Intracerebral Hemorrhage - a Preliminary Study

description: <b><i>Background/Aims:</i></b> Functional recovery in the chronic phase is a difficult problem in intracerebral hemorrhage (ICH) treatment. Long noncoding RNAs (lncRNAs) are demonstrated to be involved in central nervous system (CNS) disorders. However, the roles of lncRNAs in post-ICH injury and repair are poorly understood, especially those that may be attributed to long-term neurological deficit. The present study depicted the lncRNA and messenger RNA (mRNA) profile by microarray at late stage after an experimental ICH. <b><i>Methods:</i></b> LncRNA and mRNA microarray was used to first identify differentially expressed genes. Gene ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were performed to determine bio-functions and signaling pathways, with which differentially expressed genes are most closely related. Quantitative real-time polymerase chain reaction (PCR) was used to validate the results of microarray. Finally, the lncRNA-mRNA co-expression network was constructed to find the interaction of genes. <b><i>Results:</i></b> A total of 625 differentially expressed lncRNAs and 826 expressed mRNAs were identified. Altered genes were enriched in mitochon-drial matrix, G-protein coupled receptor signaling pathway, and olfactory transduction, which may be associated with ICH-induced pathophysiologic changes in the long term. A co-expression network profile based on 5 validated differentially expressed lncRNAs and 205 interacted mRNAs was composed of 210 nodes and 298 connections. <b><i>Conclusion:</i></b> Mitochondrial matrix, reduced G-protein coupled receptor activity, and impaired olfactory transduction may be involved in the sequelae following ICH. Further, these dysregulated lncRNAs and mRNAs may be the promising therapeutic targets to overcome obstacles in functional recovery following ICH.
DOI: 10.6084/m9.figshare.5890870
title: Supplementary Material for: The LncRNA EPEL Promotes Lung Cancer Cell Proliferation Through E2F Target Activation

description: <b><i>Background/Aims:</i></b> Recent studies have revealed that many long non-coding RNAs (lncRNAs) play oncogenic or tumor-suppressive roles in various cancers. Lung cancer is the leading cause of cancer-related death worldwide, and many lung cancer patients frequently relapse after surgery, even those in the early stages. However, the oncogenic or tumor-suppressive roles and clinical implications of lncRNAs in lung cancer have not been fully elucidated. <b><i>Methods:</i></b> The association between an E2F-mediated cell proliferation enhancing lncRNA (EPEL) expression and lung cancer patient survival was accessed using public microarray data with clinical information. Cancer-related phenotypes were analyzed by the siRNA knockdown of EPEL in two lung cancer cell lines. Gene set analysis of gene expression data were performed to identify pathways regulated by EPEL. RNA immunoprecipitation, RT-qPCR, and ChIP assays were performed to explore the functions of selected target genes regulated by EPEL. <b><i>Results:</i></b> EPEL, known as LOC90768 and MGC45800, was associated with the relapse and survival of lung cancer patients and promoted lung cancer cell proliferation through the activation of E2F target genes. EPEL knockdown specifically down-regulated the expression of cell cycle-related E2F target genes, including Cyclin B1 (CCNB1), in lung cancer cells but not that of apoptosis- or metabolism-related E2F target genes. EPEL interacted with E2F1 and regulated the expression of the E2F target genes by changing the binding efficiency of E2F1 to the E2F target promoters. Moreover, the expression levels of EPEL and CCNB1 both alone and in combination were robust prognostic markers for lung cancer. <b><i>Conclusions:</i></b> Considering its specific effects on cell cycle-related E2F target genes and its significant association with the prognosis of lung cancer patients, we suggest that the transcriptional regulation of EPEL through E2F target genes is potentially a target for the development of novel therapeutic strategies for lung cancer patients.