cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.nsrrph
title: Occurrence Download

description: A dataset containing 1435 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Androsace lactea L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 1435 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026302-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tp9cz2
title: Occurrence Download

description: A dataset containing 27277 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Colibri coruscans (Gould, 1846)"
 ]
}

 The dataset includes 27277 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026301-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.66wf5j
title: Occurrence Download

description: A dataset containing 172 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "PublishingOrg is one of (eac88d99-9f6c-4031-8fc4-8088f0e0dfe7)",
 "GadmGid is one of (COL.9_2)",
 "TaxonKey is one of (Lepidoptera)"
 ]
 }
 ]
}

 The dataset includes 172 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026303-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/0vlfyv
title: 190205_T1.xls
DOI: 10.57745/dr7kzz
title: 190205_T6.xls
DOI: 10.57745/f2k4sc
title: 190205_T2.xls
DOI: 10.57745/h8svzz
title: 190205_T5.xls
DOI: 10.57745/nuf5nb
title: 190206_T3.xls
DOI: 10.57745/oq5ean
title: 190205_T3.xls
DOI: 10.57745/oxomuv
title: 190206_T5.xls
DOI: 10.57745/pwjrvh
title: 190206_T6.xls
DOI: 10.57745/q7pkrr
title: data_read.py

description: script to read raw data
DOI: 10.57745/r6ftyc
title: README.txt
DOI: 10.57745/rcpclx
title: 190206_T4.xls
DOI: 10.57745/yuqcey
title: 190205_T4.xls
DOI: 10.15468/dl.d9ef4j
title: Occurrence Download

description: A dataset containing 3717 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Androsace obtusifolia All.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 3717 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026304-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/v3q2-b941
title: NANCY SNS-JU project "Italtel Italian in-lab testbed dataset 2"

description: This Dataset provides input data for the development of the B-RAN and attacks models for the NANCY framework, to model training and model inference functions. The data collected in the Italian in-lab testbed, namely “dataset 2”, focus on the Edge segment of the network and consider the presence of some of the NANCY components, to assess their impact with respect to the baseline defined through the first collected dataset (D6.6 “Italian in-lab testbed dataset 1”), assessment that will be carried out and completed, together with the technology evaluation, in subsequent project activities.          More specifically, the data collected in the Italtel Italian in-lab testbed, where a MEC assisted 5G network scenario with a video streaming application for generating traffic is provided, consider an Edge server based on ARMv8 CPU architecture, and some components specifically developed by the Partners for the NANCY project; these components are integrated in the Italtel environment and are part of the testbed topology set-up: ·        the “Anomaly detection application module”, provided by CRAT partner (Consortium for Research in Automation and Telecommunications) and focusing on detecting anomalous utilization of computing and network resources·        the” VOSySmonitor and vManager”, provided by VOS (Virtual Open Systems), a novel virtualization technology, designed by NANCY, to host offloaded VNFs, which can be deployed in a bare-metal fashion ensuring “application isolation”·        “Malicious traffic generation application” and “PAPI extension for ARM performance counter interaction”, provided by SSS (Sant'Anna Higher School of Pisa) for the technology validation in the context of the Italian testbed set-up·        “Italtel VTU application”, provided by ITL, which can convert audio and video streams from one format to another, at multiple encodings schemes, changing resolution, bitrate, and video parameters.The dataset contains time series, collected by transmitting video content through the Italtel VTU application.The collected dataset is representative resource-intensive video traffic that has the greatest impact on 5G/B5G network planning and provisioning. The video streaming dataset includes data directly measured while watching the video on the mobile devices and data directly measured while generating downstream video stream traversing the gNB (i.e., downstream scenario), and vice versa (i.e., upstream scenario). In each experiment, we fixed the location of the UE and the gNB.
DOI: 10.15468/dl.upwrg8
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Tiaris obscura (d'Orbigny & Lafresnaye, 1837)"
 ]
}

 The dataset includes 60 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026305-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mt5udp
title: Occurrence Download

description: A dataset containing 142 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-101.72337 21.18909,-101.72826 21.18012,-101.7248 21.18033,-101.72178 21.17952,-101.72099 21.17865,-101.7207 21.17808,-101.7191 21.17816,-101.71823 21.17838,-101.71939 21.17987,-101.71933 21.18288,-101.71884 21.1837,-101.71887 21.18435,-101.71933 21.1853,-101.71933 21.18747,-101.72038 21.18733,-101.72015 21.18993,-101.72337 21.18909))",
 "Geometry POLYGON((-101.73655 21.19507,-101.73647 21.18652,-101.74319 21.17976,-101.72994 21.16942,-101.72966 21.17233,-101.71312 21.17622,-101.72049 21.18966,-101.72333 21.18944,-101.72557 21.19298,-101.72745 21.19336,-101.72946 21.19227,-101.73655 21.19507))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 142 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026307-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tnppsq
title: Occurrence Download

description: A dataset containing 265 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Anthemis chia L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 265 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026308-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27606382
title: Clinical results of helical tomotherapy for high-grade gliomas

description: Radiotherapy-related damage of normal tissue inevitably influences the treatment outcomes in the context of high-grade gliomas (HGGs) treatment. We reported the survival outcomes and toxicities of patients with HGG treated with helical tomotherapy (HT) and the prognostic factors were analyzed. A total of 67 patients (29 had grade III and 38 had grade IV HGGs) who received HT between January 2016 and June 2020 were analyzed. Overall survival (OS) and progression-free survival (PFS) from the beginning of HT and OS from surgery were assessed, and toxicity and disease control were described briefly. For patients with grade III HGGs, median OS (mOS) and median PFS (mPFS) from the beginning of HT were 68.933 and 62.967 months, respectively. For patients with grade IV HGGs, mOS and mPFS from the beginning of HT were 19.667 and 7.23 months, respectively. No grade ≥3 acute or late nonhematologic toxicities were observed. Multivariable Cox regression analysis showed that methylguanine methyltransferase (MGMT) methylated status, age, number of lesions, WHO grade, and monocyte count for PFS were significant. Age, monocyte count, and isocitrate dehydrogenase (IDH) status for OS. Treatment of HGGs with HT appears to be potentially effective and safe. HT is promising for glioblastomas (GBM), especially complex cases with infratentorial involvement or multiple lesions. This study highlighted the potential clinical significance of systemic inflammation indicators in predicting survival and disease progression.
DOI: 10.6084/m9.figshare.27606382.v1
title: Clinical results of helical tomotherapy for high-grade gliomas

description: Radiotherapy-related damage of normal tissue inevitably influences the treatment outcomes in the context of high-grade gliomas (HGGs) treatment. We reported the survival outcomes and toxicities of patients with HGG treated with helical tomotherapy (HT) and the prognostic factors were analyzed. A total of 67 patients (29 had grade III and 38 had grade IV HGGs) who received HT between January 2016 and June 2020 were analyzed. Overall survival (OS) and progression-free survival (PFS) from the beginning of HT and OS from surgery were assessed, and toxicity and disease control were described briefly. For patients with grade III HGGs, median OS (mOS) and median PFS (mPFS) from the beginning of HT were 68.933 and 62.967 months, respectively. For patients with grade IV HGGs, mOS and mPFS from the beginning of HT were 19.667 and 7.23 months, respectively. No grade ≥3 acute or late nonhematologic toxicities were observed. Multivariable Cox regression analysis showed that methylguanine methyltransferase (MGMT) methylated status, age, number of lesions, WHO grade, and monocyte count for PFS were significant. Age, monocyte count, and isocitrate dehydrogenase (IDH) status for OS. Treatment of HGGs with HT appears to be potentially effective and safe. HT is promising for glioblastomas (GBM), especially complex cases with infratentorial involvement or multiple lesions. This study highlighted the potential clinical significance of systemic inflammation indicators in predicting survival and disease progression.
DOI: 10.6084/m9.figshare.27149664
title: Combining clinostating and proton irradiation for modeling the space environment: a case study with a Chernobyl accession of <i>Arabidopsis thaliana</i>

description: The study of mechanisms of plant responses to extreme conditions, particularly, microgravity and ionizing radiation, is crucial for space exploration. Modern space biology of plants focuses on increasing plant tolerance to harsh conditions of space environment. Given the limited access to the International Space Station, we designed and assembled the 3D clinostat for mimicking microgravity, which, in combination with proton irradiation, allows simulating space conditions. As a case study for testing the device, we studied the effect of clinostating on <i>Arabidopsis thaliana</i> accession originating from the Chernobyl exclusion zone. Using the combined clinostating and proton irradiation, we simulated the conditions of long-term space flight for <i>Arabidopsis thaliana</i> plants of the Chernobyl accession – progeny of chronically irradiated plants, grown from field-collected (Masa-0) and laboratory-cultivated (Masa-0-1) seeds, and for wild-type Col-8. The clinostating and irradiation of plants were also carried out separately. Plant responses were studied as photosynthetic and phenotypic endpoints of seedlings. Parameters of chlorophyll fluorescence estimated immediately after exposure showed that Masa-0-1 plants were resistant to the simulated space conditions, while Masa-0 demonstrated modulation of non-photochemical fluorescence quenching. Proton irradiation generally inhibited photosynthesis of Masa-0, Masa-0-1, and Col-8 seedlings. The combined effect of irradiation and clinostating modulated the photosynthetic activity of Col-8 seedlings. The leaf area of seedlings did not change after exposure to simulated conditions. The 3D clinostat model and software are published along with this article for researchers interested in the field of space biology.
DOI: 10.6084/m9.figshare.27149664.v2
title: Combining clinostating and proton irradiation for modeling the space environment: a case study with a Chernobyl accession of <i>Arabidopsis thaliana</i>

description: The study of mechanisms of plant responses to extreme conditions, particularly, microgravity and ionizing radiation, is crucial for space exploration. Modern space biology of plants focuses on increasing plant tolerance to harsh conditions of space environment. Given the limited access to the International Space Station, we designed and assembled the 3D clinostat for mimicking microgravity, which, in combination with proton irradiation, allows simulating space conditions. As a case study for testing the device, we studied the effect of clinostating on <i>Arabidopsis thaliana</i> accession originating from the Chernobyl exclusion zone. Using the combined clinostating and proton irradiation, we simulated the conditions of long-term space flight for <i>Arabidopsis thaliana</i> plants of the Chernobyl accession – progeny of chronically irradiated plants, grown from field-collected (Masa-0) and laboratory-cultivated (Masa-0-1) seeds, and for wild-type Col-8. The clinostating and irradiation of plants were also carried out separately. Plant responses were studied as photosynthetic and phenotypic endpoints of seedlings. Parameters of chlorophyll fluorescence estimated immediately after exposure showed that Masa-0-1 plants were resistant to the simulated space conditions, while Masa-0 demonstrated modulation of non-photochemical fluorescence quenching. Proton irradiation generally inhibited photosynthesis of Masa-0, Masa-0-1, and Col-8 seedlings. The combined effect of irradiation and clinostating modulated the photosynthetic activity of Col-8 seedlings. The leaf area of seedlings did not change after exposure to simulated conditions. The 3D clinostat model and software are published along with this article for researchers interested in the field of space biology.
DOI: 10.6084/m9.figshare.27149664.v1
title: Combining clinostating and proton irradiation for modeling the space environment: a case study with a Chernobyl accession of <i>Arabidopsis thaliana</i>

description: The study of mechanisms of plant responses to extreme conditions, particularly, microgravity and ionizing radiation, is crucial for space exploration. Modern space biology of plants focuses on increasing plant tolerance to harsh conditions of space environment. Given the limited access to the International Space Station, we designed and assembled the 3D clinostat for mimicking microgravity, which, in combination with proton irradiation, allows simulating space conditions. As a case study for testing the device, we studied the effect of clinostating on <i>Arabidopsis thaliana</i> accession originating from the Chernobyl exclusion zone. Using the combined clinostating and proton irradiation, we simulated the conditions of long-term space flight for <i>Arabidopsis thaliana</i> plants of the Chernobyl accession – progeny of chronically irradiated plants, grown from field-collected (Masa-0) and laboratory-cultivated (Masa-0-1) seeds, and for wild-type Col-8. The clinostating and irradiation of plants were also carried out separately. Plant responses were studied as photosynthetic and phenotypic endpoints of seedlings. Parameters of chlorophyll fluorescence estimated immediately after exposure showed that Masa-0-1 plants were resistant to the simulated space conditions, while Masa-0 demonstrated modulation of non-photochemical fluorescence quenching. Proton irradiation generally inhibited photosynthesis of Masa-0, Masa-0-1, and Col-8 seedlings. The combined effect of irradiation and clinostating modulated the photosynthetic activity of Col-8 seedlings. The leaf area of seedlings did not change after exposure to simulated conditions. The 3D clinostat model and software are published along with this article for researchers interested in the field of space biology.
DOI: 10.6084/m9.figshare.27183511
title: Mutation profiling through whole genome sequencing of electron beam-induced black gram (<i>Vigna mungo</i> L. Hepper) mutant

description: Black gram (<i>Vigna mungo</i> [L.] Hepper) is an important annual legume with great economic, nutritional and ecological significance. Novel variations through induced mutagenesis can accelerate narrow genetic base-impeded black gram improvement. This is a first study on characterization of genome-wide mutation spectrum induced by electron beam (EB). Black gram genotype ‘Pant U-31’ was irradiated with 400 Gy EB generated in a 10 MeV LINAC. A stable mutant PM-32 (M<sub>6</sub>) was re-sequenced by combining Illumina (BIOO Scientific, Inc., Austin, TX) and Nanopore Technologies (Oxford, UK). Variants were predicted in reference to the available whole genome scaffold level draft assembly of parent ‘Pant U-31’. Genome analysis predicted a total of 76,893 genes of which 58,517 were annotated. The identified variants totaling 728,161, largely comprised (91.56%) of single base substitutions (SBSs) with a transition (Ti) to transversion (Tv) ratio of 1.95. Of the indels constituting 8.44% of total induced variants, insertions accounted for 4.29%, with preponderance of multiple bases (53.63%) and 2–5 bp insertions as the major class (33.71%). Multiple-base deletions (2–5 bases) formed the bulk (31.14%) of the total deletions. The genic variants (2438) with estimated high and moderate effects were located within 1271 predicted genes. A higher number of mutations were observed on chromosomes Vm1 (588) and Vm3 (428) with the highest frequency on chromosome Vm3 (every 0.07 Mb). Our study reiterated the mutagenic utility of EB for inducing SBSs and small indels genome-wide. The knowledge gained from SNP-level profiling of EB-induced mutations can expedite comparative mutation breeding studies in legumes.
DOI: 10.6084/m9.figshare.27183511.v1
title: Mutation profiling through whole genome sequencing of electron beam-induced black gram (<i>Vigna mungo</i> L. Hepper) mutant

description: Black gram (<i>Vigna mungo</i> [L.] Hepper) is an important annual legume with great economic, nutritional and ecological significance. Novel variations through induced mutagenesis can accelerate narrow genetic base-impeded black gram improvement. This is a first study on characterization of genome-wide mutation spectrum induced by electron beam (EB). Black gram genotype ‘Pant U-31’ was irradiated with 400 Gy EB generated in a 10 MeV LINAC. A stable mutant PM-32 (M<sub>6</sub>) was re-sequenced by combining Illumina (BIOO Scientific, Inc., Austin, TX) and Nanopore Technologies (Oxford, UK). Variants were predicted in reference to the available whole genome scaffold level draft assembly of parent ‘Pant U-31’. Genome analysis predicted a total of 76,893 genes of which 58,517 were annotated. The identified variants totaling 728,161, largely comprised (91.56%) of single base substitutions (SBSs) with a transition (Ti) to transversion (Tv) ratio of 1.95. Of the indels constituting 8.44% of total induced variants, insertions accounted for 4.29%, with preponderance of multiple bases (53.63%) and 2–5 bp insertions as the major class (33.71%). Multiple-base deletions (2–5 bases) formed the bulk (31.14%) of the total deletions. The genic variants (2438) with estimated high and moderate effects were located within 1271 predicted genes. A higher number of mutations were observed on chromosomes Vm1 (588) and Vm3 (428) with the highest frequency on chromosome Vm3 (every 0.07 Mb). Our study reiterated the mutagenic utility of EB for inducing SBSs and small indels genome-wide. The knowledge gained from SNP-level profiling of EB-induced mutations can expedite comparative mutation breeding studies in legumes.
DOI: 10.5281/zenodo.13135541
title: Functionalized graphene via a one pot reaction enabling exact pore sizes, modifiable pore functionalization and precision doping - JACS

description: The dataset uploaded herein is associated with the paper published under the title "Functionalized graphene via a one pot reaction enabling exact pore sizes, modifiable pore functionalization and precision doping" with the American Chemical Society - Jouranl of the American Chemical Society. This dataset includes the .vasp files for all modeled structures, the INCAR for geometry optimizations, the KPOINTS for the generated band structure diagrams, the input script for the Zeo++ calculations, and the integrated Python notebook (.ipynb) that was used to read, analyze and plot the semiconducting data (.xlsx). This data has been made available to the scientific community in the interest of open-source and accessible data. The authors request that you please cite the associated paper and Zenodo dataset if used.

Abstract

Functionalizing graphene with exact pore size, specific functional groups, and precision doping poses many significant challenges. Current methods lack precision and produce random pore sizes, site of attachments and amounts of dopant leading to compromised structural integrity and affecting graphene’s applications. In this work, we report a strategy for the synthesis of functionalized graphitic materials with modifiable nanometer sized pores via a Pictet-Spengler polymerization reaction. This one-pot, four step synthesis uses concepts based on Covalent Organic Frameworks (COFs) synthesis to produce crystalline two-dimensional materials that were confirmed by pXRD, TEM measurements and DFT studies. These new materials are structurally analogous to doped graphene and graphene oxide (GO) but unlike GO maintain their semi-conductive properties when fully functionalized.