cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12788446.v1
title: Additional file 2 of A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex

description: Additional file 2: Table S2. Full EAGER pipeline results for LUND1 shotgun sequencing data when mapped to HG19 human reference genome and TB ancestor genome, the non-UDG-treated enriched LUND1 data when mapped to the TB ancestor genome, and the UDG-treated enriched LUND1 data when mapped to the TB ancestor genome.
DOI: 10.6084/m9.figshare.12788437
title: Additional file 11 of A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex

description: Additional file 11: Table S10. Date randomization results for L4 dataset.
DOI: 10.6084/m9.figshare.12788443.v1
title: Additional file 1 of A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex

description: Additional file 1: Table S1. Assigned reads from all taxonomic levels represented in the metagenomic LUND1 library prior to in-solution capture for MTBC DNA.
DOI: 10.6084/m9.figshare.12788434
title: Additional file 10 of A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex

description: Additional file 10: Table S9. Date randomization results for MTBC dataset.
DOI: 10.6084/m9.figshare.12788434.v1
title: Additional file 10 of A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex

description: Additional file 10: Table S9. Date randomization results for MTBC dataset.
DOI: 10.6084/m9.figshare.12788437.v1
title: Additional file 11 of A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex

description: Additional file 11: Table S10. Date randomization results for L4 dataset.
DOI: 10.6084/m9.figshare.12788420
title: Low-field NMR and X-ray CT data for hydrate-bearing sediments

description: Data obtained by jointly measurements of L-field NMR and X-ray CT on hydrate-bearing sediments
DOI: 10.6084/m9.figshare.12788420.v1
title: Low-field NMR and X-ray CT data for hydrate-bearing sediments

description: Data obtained by jointly measurements of L-field NMR and X-ray CT on hydrate-bearing sediments
DOI: 10.6084/m9.figshare.12788279
title: Nucleotide sequence alignments of the 119 genes specific to MRONJ

description: Nucleotide sequence alignments of the 119 genes specific to MRONJ <br>
DOI: 10.6084/m9.figshare.12788132
title: Effects of minor cations in euryhaline crabs

description: This is raw data used in the manuscript entitled "Hemolymph composition, gene expression in the gills, and thus the survival of euryhaline crabs are controlled by ambient minor cations according to osmotic condition-dependent manner" by Yamaguchi and Soga (2020). <br>
DOI: 10.6084/m9.figshare.12788279.v1
title: Nucleotide sequence alignments of the 119 genes specific to MRONJ

description: Nucleotide sequence alignments of the 119 genes specific to MRONJ <br>
DOI: 10.6084/m9.figshare.12788132.v1
title: Effects of minor cations in euryhaline crabs

description: This is raw data used in the manuscript entitled "Hemolymph composition, gene expression in the gills, and thus the survival of euryhaline crabs are controlled by ambient minor cations according to osmotic condition-dependent manner" by Yamaguchi and Soga (2020). <br>
DOI: 10.6084/m9.figshare.12786806
title: Sample X1, X2, X3 cleandata raw data.gz

description: Samples X1, X2, X3 cleandata raw datas
DOI: 10.6084/m9.figshare.12786800
title: Caribbean Shorebirds eBird Raw Data

description: All data used in this assessment came from the World eBird Basic Dataset (Sullivan et al., 2009; publicly available at ebird.org/data/download). We downloaded the data from eBird on January 21, 2020 and filtered it using the R package ‘Auk’ (Strimas-Mackey, Miller & Hochachka, 2018) to include only records of interest (filtered by country and species). The result was a list of all eBird shorebird records in the insular Caribbean.<br>We filtered to include the following countries:("Jamaica", "Cuba", "The Bahamas", "Haiti", "Dominican Republic", "Antigua and Barbuda", "Dominica", "Saint Lucia", "Saint Vincent and the Grenadines", "Barbados", "Grenada", "Trinidad and Tobago", "Anguilla", "Aruba", "Bahamas", "Caribbean Netherlands", "Cayman Islands", "Guadeloupe", "Martinique", "Sint Maarten", "Saint Kitts and Nevis", "Virgin Islands (British)", "Virgin Islands (U.S.)", "Puerto Rico", "Saint Martin (French part)", "Turks and Caicos Islands", "Curaçao", "Saint Barthélemy", "Montserrat")<br>We filtered to include the following species:("Black-necked Stilt", "American Avocet", "American Oystercatcher", "Black-bellied Plover", "American Golden-Plover", "Pacific Golden-Plover", "Snowy Plover", "Wilson's Plover", "Semipalmated Plover", "Piping Plover", "Killdeer", "Upland Sandpiper", "Whimbrel", "Long-billed Curlew", "Hudsonian Godwit", "Marbled Godwit", "Ruddy Turnstone", "Red Knot", "Stilt Sandpiper", "Sanderling", "Dunlin", "Baird's Sandpiper", "Least Sandpiper", "White-rumped Sandpiper", "Buff-breasted Sandpiper", "Pectoral Sandpiper", "Semipalmated Sandpiper", "Western Sandpiper", "Short-billed Dowitcher", "Long-billed Dowitcher", "Wilson's Snipe", "Spotted Sandpiper", "Solitary Sandpiper", "Wandering Tattler", "Greater Yellowlegs", "Willet", "Lesser Yellowlegs", "Wilson's Phalarope", "Red-necked Phalarope", "Red Phalarope", "Double-striped Thick-knee", "Southern Lapwing", "Collared Plover", "Northern Jacana", "Wattled Jacana", "South American Snipe")<br>We dropped the following columns in our filter:("global_unique_identifier", "last_edited_date", "taxonomic_order", "category", "subspecies_common_name", "breeding_bird_atlas_code", "breeding_bird_atlas_category", "age_sex", "country_code", "state_code","county", "county code", "usfws_code", "atlas_block", "locality_type", "time_observations_started", "project_code", "all_species_reported", "has_media", "trip_comments", "species_comments")
DOI: 10.6084/m9.figshare.12786794
title: data.rar

description: This is the dataset for research paper titled "Timescale and Effectiveness of Residual Saltwater Desalinization behind Subsurface Dams in an Unconfined Aquifer" which has been submitted to Water Research Resources.
DOI: 10.6084/m9.figshare.12786806.v1
title: Sample X1, X2, X3 cleandata raw data.gz

description: Samples X1, X2, X3 cleandata raw datas
DOI: 10.6084/m9.figshare.12786782
title: Gene database of Haloferax volcanii DS2

description: <i>Haloferax volcanii</i> is a facultative anaerobic archaeon capable of survival under hypersaline environment. Found in salt lakes and other hypersaline environment, the archaeon could be cultivated in the laboratory, and serve as a useful model organism for understanding the physiology of microbes able to survive under high salt environments. This work sought to provide basic genetic information about <i>Haloferax volcanii</i> DS2, whose annotated genome sequence was downloaded from Genbank. Comprising gene name, gene function, and gene sequence, the resource should find use in a variety of fundamental and applied biotechnology workflows such as those seeking to understanding the evolution of tolerance to high salt environment, as well as exploring the biotechnological potential of the archaeon.
DOI: 10.6084/m9.figshare.12786794.v1
title: data.rar

description: This is the dataset for research paper titled "Timescale and Effectiveness of Residual Saltwater Desalinization behind Subsurface Dams in an Unconfined Aquifer" which has been submitted to Water Research Resources.
DOI: 10.6084/m9.figshare.12786800.v1
title: Caribbean Shorebirds eBird Raw Data

description: All data used in this assessment came from the World eBird Basic Dataset (Sullivan et al., 2009; publicly available at ebird.org/data/download). We downloaded the data from eBird on January 21, 2020 and filtered it using the R package ‘Auk’ (Strimas-Mackey, Miller & Hochachka, 2018) to include only records of interest (filtered by country and species). The result was a list of all eBird shorebird records in the insular Caribbean.<br>We filtered to include the following countries:("Jamaica", "Cuba", "The Bahamas", "Haiti", "Dominican Republic", "Antigua and Barbuda", "Dominica", "Saint Lucia", "Saint Vincent and the Grenadines", "Barbados", "Grenada", "Trinidad and Tobago", "Anguilla", "Aruba", "Bahamas", "Caribbean Netherlands", "Cayman Islands", "Guadeloupe", "Martinique", "Sint Maarten", "Saint Kitts and Nevis", "Virgin Islands (British)", "Virgin Islands (U.S.)", "Puerto Rico", "Saint Martin (French part)", "Turks and Caicos Islands", "Curaçao", "Saint Barthélemy", "Montserrat")<br>We filtered to include the following species:("Black-necked Stilt", "American Avocet", "American Oystercatcher", "Black-bellied Plover", "American Golden-Plover", "Pacific Golden-Plover", "Snowy Plover", "Wilson's Plover", "Semipalmated Plover", "Piping Plover", "Killdeer", "Upland Sandpiper", "Whimbrel", "Long-billed Curlew", "Hudsonian Godwit", "Marbled Godwit", "Ruddy Turnstone", "Red Knot", "Stilt Sandpiper", "Sanderling", "Dunlin", "Baird's Sandpiper", "Least Sandpiper", "White-rumped Sandpiper", "Buff-breasted Sandpiper", "Pectoral Sandpiper", "Semipalmated Sandpiper", "Western Sandpiper", "Short-billed Dowitcher", "Long-billed Dowitcher", "Wilson's Snipe", "Spotted Sandpiper", "Solitary Sandpiper", "Wandering Tattler", "Greater Yellowlegs", "Willet", "Lesser Yellowlegs", "Wilson's Phalarope", "Red-necked Phalarope", "Red Phalarope", "Double-striped Thick-knee", "Southern Lapwing", "Collared Plover", "Northern Jacana", "Wattled Jacana", "South American Snipe")<br>We dropped the following columns in our filter:("global_unique_identifier", "last_edited_date", "taxonomic_order", "category", "subspecies_common_name", "breeding_bird_atlas_code", "breeding_bird_atlas_category", "age_sex", "country_code", "state_code","county", "county code", "usfws_code", "atlas_block", "locality_type", "time_observations_started", "project_code", "all_species_reported", "has_media", "trip_comments", "species_comments")
DOI: 10.6084/m9.figshare.12786779
title: A novel outlier-adapted multi-stage ensemble model with feature transformation for credit scoring

description: 原始数据分为三个部分：澳大利亚信用数据集（Australian.csv），日本信用数据集（JapanData.csv）和波兰信用数据集（Polish.csv）。这些原始数据是从UCI机器学习库下载的。
DOI: 10.6084/m9.figshare.12786782.v1
title: Gene database of Haloferax volcanii DS2

description: <i>Haloferax volcanii</i> is a facultative anaerobic archaeon capable of survival under hypersaline environment. Found in salt lakes and other hypersaline environment, the archaeon could be cultivated in the laboratory, and serve as a useful model organism for understanding the physiology of microbes able to survive under high salt environments. This work sought to provide basic genetic information about <i>Haloferax volcanii</i> DS2, whose annotated genome sequence was downloaded from Genbank. Comprising gene name, gene function, and gene sequence, the resource should find use in a variety of fundamental and applied biotechnology workflows such as those seeking to understanding the evolution of tolerance to high salt environment, as well as exploring the biotechnological potential of the archaeon.
DOI: 10.6084/m9.figshare.12786314
title: Source Data of "Transition metal dichalcogenide metamaterials with atomic precision"

description: The source data for Figures 1- 4, including experimental and calculated optical spectra, SEM and TEM images, and EELS spectra, are provided as a Source Data file.
DOI: 10.6084/m9.figshare.12786296
title: Precompiled data for "A comparison of neuronal population dynamics measured with calcium imaging and electrophysiology"

description: This is a precompiled dataset for manuscript "A comparison of neuronal population dynamics measured with calcium imaging and electrophysiology" and is applied with code at https://github.com/zqwei/Neural-Recording-Methodology-Comparison<br>
DOI: 10.6084/m9.figshare.12786314.v1
title: Source Data of "Transition metal dichalcogenide metamaterials with atomic precision"

description: The source data for Figures 1- 4, including experimental and calculated optical spectra, SEM and TEM images, and EELS spectra, are provided as a Source Data file.
DOI: 10.6084/m9.figshare.12784175
title: Data from: Predation and bark beetle dynamics. Oecologia 1997

description: Bark beetle populations may undergo dramatic fluctuations and are often important pests in coniferous forests. Their dynamics are thought to be primarily driven by factors a􏰀ffecting the resistance of the host tree to attack, i.e., bottom-up forces, while natural enemies are usually assigned a minor role in these systems. I present behavioral experiments that suggest that the clerid beetle Thanasimus dubius may be an important source of mortality for the bark beetle Dendroctonus frontalis during attack of the host tree, and determine the nature of the functional response of T. dubius under conditions close to natural. I also examine the numerical response of T. dubius to large-scale fluctuations in D. frontalis density, and the relationship between bark beetle population trends and predator density, and that beetle populations tend to decline when predator densities are high. Combined with the eff􏰀ects of clerid larvae on bark beetle broods, these results suggest that top-down forces generated by natural enemies could also be an important component of bark beetle dynamics. The implications of these results for bark beetle dynamics are discussed in relation to the prolonged life-cycle of clerid beetles.
DOI: 10.6084/m9.figshare.12784175.v1
title: Data from: Predation and bark beetle dynamics. Oecologia 1997

description: Bark beetle populations may undergo dramatic fluctuations and are often important pests in coniferous forests. Their dynamics are thought to be primarily driven by factors a􏰀ffecting the resistance of the host tree to attack, i.e., bottom-up forces, while natural enemies are usually assigned a minor role in these systems. I present behavioral experiments that suggest that the clerid beetle Thanasimus dubius may be an important source of mortality for the bark beetle Dendroctonus frontalis during attack of the host tree, and determine the nature of the functional response of T. dubius under conditions close to natural. I also examine the numerical response of T. dubius to large-scale fluctuations in D. frontalis density, and the relationship between bark beetle population trends and predator density, and that beetle populations tend to decline when predator densities are high. Combined with the eff􏰀ects of clerid larvae on bark beetle broods, these results suggest that top-down forces generated by natural enemies could also be an important component of bark beetle dynamics. The implications of these results for bark beetle dynamics are discussed in relation to the prolonged life-cycle of clerid beetles.
DOI: 10.6084/m9.figshare.12783869
title: Supplementary A: New zircon U-Pb, REE and Lu-Hf data for detrital samples from Paleoproterozoic sequences in Madagascar

description: This includes new zircon U-Pb, REE and Lu-Hf for samples in Madagascar
DOI: 10.6084/m9.figshare.12783887.v1
title: SupplementaryB_Database.xlsx

description: Compiled database of zircon U-Pb and Lu-Hf data from Madagascar, East Africa and India. Includes detrital and magmatic data.
DOI: 10.6084/m9.figshare.12783647
title: Behavioral Data for Large-scale Dynamics of Perceptual Decision Information across Human Cortex

description: This dataset contains behavioral data for "Large-scale Dynamics of Perceptual Decision Information across Human Cortex".<br><br>The HDF file can be read by using `pandas.read_hdf`. This will return a table that contains one row per trial. <br><br>Importantly, the column "hash" matches the index "trial" in the source reconstructed data.<br><br><br>Some important columns:<br><br> choice_rt - reaction time<br> confidence - confidence judgement (1 = low, 2 = high)<br> contrast_probe - sequence of 10 contrast values, one for each sample (0.5 = reference)<br> expand - whether grating was expanding (1) or contracting (-1)<br> noise_sigma - generative standard deviation of distribution that contrast samples were drawn from<br> repeat - whether this was a repeated stimulus<br> response - choice (-1 = 'reference higher', 1 = 'test higher') <br> side - indicates correct answer (-1 = 'reference higher', 1 = 'stimulus higher')<br> snum - subject number<br> hash - unique trial identifier (matches 'trial' field in source reconstructed data)<br><br>Last tested with pandas 0.24.2.
DOI: 10.6084/m9.figshare.12783644
title: Rachul et al. Immune Boosting Websites - Raw Data.xlsx

description: The dataset includes includes the raw data from a content analysis of webpages collected on April 1, 2020 from two Google searches using the phrase "immune boosting" and "coronavirus", one search in Canada and one search with regional settings set to the USA. The second tab in the Excel spreadsheet provides details about the coding framework used to code the webpages.<br>
DOI: 10.6084/m9.figshare.12783620
title: COVID19 generation database 2020.sav

description: COVID-19 prevention in generations. Database 2020.
DOI: 10.6084/m9.figshare.12783647.v1
title: Behavioral Data for Large-scale Dynamics of Perceptual Decision Information across Human Cortex

description: This dataset contains behavioral data for "Large-scale Dynamics of Perceptual Decision Information across Human Cortex".<br><br>The HDF file can be read by using `pandas.read_hdf`. This will return a table that contains one row per trial. <br><br>Importantly, the column "hash" matches the index "trial" in the source reconstructed data.<br><br><br>Some important columns:<br><br> choice_rt - reaction time<br> confidence - confidence judgement (1 = low, 2 = high)<br> contrast_probe - sequence of 10 contrast values, one for each sample (0.5 = reference)<br> expand - whether grating was expanding (1) or contracting (-1)<br> noise_sigma - generative standard deviation of distribution that contrast samples were drawn from<br> repeat - whether this was a repeated stimulus<br> response - choice (-1 = 'reference higher', 1 = 'test higher') <br> side - indicates correct answer (-1 = 'reference higher', 1 = 'stimulus higher')<br> snum - subject number<br> hash - unique trial identifier (matches 'trial' field in source reconstructed data)<br><br>Last tested with pandas 0.24.2.
DOI: 10.6084/m9.figshare.12783620.v2
title: COVID19 generation database 2020.sav

description: COVID-19 prevention in generations. Database 2020.
DOI: 10.6084/m9.figshare.12783467
title: base datos agronómicos Mayo 2018.xlsx

description: Dataset of morphoagronomic data colected during three seasons in several regions of Colombia.
DOI: 10.6084/m9.figshare.12783467.v1
title: base datos agronómicos Mayo 2018.xlsx

description: Dataset of morphoagronomic data colected during three seasons in several regions of Colombia.
DOI: 10.6084/m9.figshare.12783371
title: StringDecomposer_release_v1.0.0

description: Results of the StringDecomposer v1.0.0 on available centromeres assemblies cenX, cen8, and cen6, ONT and Hifi centromeric reads provided by T2T-consortium.
DOI: 10.6084/m9.figshare.12783419
title: Results from Picrust2 analysis

description: The dataset represents the abundance of potential metabolic functions of five marine copepods associated bacteriobiome.<br>
DOI: 10.6084/m9.figshare.12783419.v1
title: Results from Picrust2 analysis

description: The dataset represents the abundance of potential metabolic functions of five marine copepods associated bacteriobiome.<br>
DOI: 10.6084/m9.figshare.12783344
title: MS Data (Fig. 1a and ED Fig. 9a)

description: Mascot (.sf3), Excel and Graphpad (.pzfx) files used for Fig. 1a and Fig. S9a. Raw data can be found on PRIDE at Project DOI: 10.6019/PXD019023.
DOI: 10.6084/m9.figshare.12783347
title: Similar rates of fat oxidation during graded submaximal exercise in women of different body composition

description: Background. Despite the specific challenges pregnancy, menopause and contraception imposes on women’s cardiovascular health, no study has currently evaluated substrate oxidation of women differing in body composition at various exercise intensities recommended for weight loss.Methods. A total of 35 healthy women (age 30.8±9.5 yr) classified according to their BMI in normal weight (NOR; ≤24.9 kg·m<sup>2</sup>), overweight (OVW; 25-29.9 kg·m<sup>2</sup>) and obese groups (OBE; ≥30 kg·m<sup>2</sup>) completed a submaximal graded test (intensities eliciting ~30%, 40%, 50% and 60% of maximum oxygen uptake). Blood lactate, perceived exertion and absolute and relative substrate oxidation for fat (OX<sub>FAT</sub>) and carbohydrates (OX<sub>CHO</sub>) were measured at each stage.Results. Perceived exertion and blood lactate increased as a function of exercise but did not differ across groups. There were no significant changes in absolute and relative OX<sub>FAT</sub> across groups, or as a function of exercise intensity. Peak OX<sub>FAT</sub> occurred at the 40%, 50% and 40% stages for NOR, OVW and OBE groups, respectively, with no significant differences across groups.Discussion. We measured no differences, but considerable inter-individual variation, in fat oxidation in women of different body composition. This result is in agreement with previous research based on exercise performed at constant rate and in independent participant groups. Exercise prescription should emphasize individualizing testing responses for efficient weight management.
DOI: 10.6084/m9.figshare.12783371.v1
title: StringDecomposer_release_v1.0.0

description: Results of the StringDecomposer v1.0.0 on available centromeres assemblies cenX, cen8, and cen6, ONT and Hifi centromeric reads provided by T2T-consortium.
DOI: 10.6084/m9.figshare.12783293
title: A novel outlier-adapted multi-stage ensemble model with feature transformation for credit scoring

description: The raw data are divided into three parts: the Australian credit dataset (Australian.csv), the Japanese credit dataset (JapanData.csv), and the Polish credit dataset (Polish.csv). These raw data were downloaded from the UCI machine learning library.
DOI: 10.6084/m9.figshare.12783344.v1
title: MS Data (Fig. 1a and ED Fig. 9a)

description: Mascot (.sf3), Excel and Graphpad (.pzfx) files used for Fig. 1a and Fig. S9a. Raw data can be found on PRIDE at Project DOI: 10.6019/PXD019023.
DOI: 10.6084/m9.figshare.12783272
title: High-resolution OMI NO2 for mid-Atlantic USA: June & July 2008 - 2012

description: Tropospheric NO2 vertical column contents from OMI during June & July 2008 - 2012 in the mid-Atlantic.<br>There are two file groups: <br>1. OMI NO2 processed with air mass factors using observationally-constrained NO2 profiles from a high-resolution regional model.<br>2. OMI NO2 processed with air mass factors using observationally-constrained NO2 profiles from a high-resolution regional model, which are further downscaled to 1.33 km resolution using model variability in the regional model. <br>References:-Goldberg, D. L., Lamsal, L. N., Loughner, C. P., Swartz, W. H., Lu, Z., and Streets, D. G.: A high-resolution and observationally constrained OMI NO2 satellite retrieval, Atmos. Chem. Phys., 17, 11403–11421, https://doi.org/10.5194/acp-17-11403-2017, 2017.<br>-Kim, H. C., Lee, P., Judd, L., Pan, L., and Lefer, B.: OMI NO2 column densities over North American urban cities: the effect of satellite footprint resolution, Geosci. Model Dev., 9, 1111–1123, https://doi.org/10.5194/gmd-9-1111-2016, 2016.