cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28280474.v1
title: Original data.

description: The rock cavy, a social rodent, emits alarm calls to signal danger. These calls are believed to be adjusted depending on the type of predator and the urgency of the threat. To confirm this, we aimed to compare the acoustic responses of free-range Kerodon rupestris in different threat contexts. The study was conducted in two conservation units located in the Brazilian semiarid region known as the Caatinga. All alarm calls were collected using the ad libitum method. Calls were classified through aural and visual inspection using Raven Pro software. Discriminant function analysis was applied to test the classification of vocal types. To assess differences in vocalization quantities and acoustic parameters, generalized mixed linear models were used, followed by Tukey post hoc tests when appropriate. Our results showed that rock cavies emitted two vocal types (alarm whistle and fast alarm whistle) in threat contexts. It was observed that both the type of threat and the proximity of the threat affected the intervals between pulses of the alarm whistles. Rocky cavies emitted alarm whistles with longer intervals between pulses when faced with threats from humans and dogs than birds of prey, tayra and ocelot. When the threat was closer, the rocky cavies emitted alarm whistles with shorter intervals between pulses. Fast alarm whistles were emitted only by rock cavy close to potential hunting predators. This study highlights that the distance from the threat and different threats influence adjustments in K. rupestris alarm calls. The rock cavy signals higher-degree dangers by emitting faster calls with shorter intervals between pulses.
DOI: 10.6084/m9.figshare.24156453.v1
title: 20230919_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.25093709.v1
title: Radioreports_coded_Dxaccuracy

description: This sheet has the radiologists' reports coded for presence or absence of each target findings.
DOI: 10.6084/m9.figshare.24441706.v1
title: GTA genotyping input and output

description: New selection methods, using trait-specific markers (i.e., marker assisted selection (MAS)) and/or genome-wide markers (i.e., genomic selection (GS)) are becoming increasingly widespread in different breeding programs. This new era requires new innovative and cost-efficient solutions for genotyping. Reduction in sequencing cost has democratized the use of high-throughput genotyping methods based on next-generation sequencing (NGS) for both genome-wide (e.g., genotyping-by-sequencing (GBS)) and targeted (e.g., amplicon sequencing (AmpSeq)) single-nucleotide polymorphism (SNP) profiling in large breeding populations efficiently. While genome-wide and targeted genotyping are commonly used for MAS and GS, no genotyping platform can produce these two types of data together for large-scale application. Here, we present the Genome-wide & Targeted Amplicon (GTA) genotyping platform, an integrated GBS and AmpSeq approach, to provide an all-in-one cost-effective genotyping solution to breeders and research communities. Custom primers carrying a tail comprising a restriction enzyme site and an alien sequence were designed to target 23 and 36 high-value molecular markers associated with key agronomical traits by multiplex PCRs in soybean and barley, respectively. The resulting amplicons were compatible with the GBS library preparation procedure allowing to provide both GBS data and targeted genotyping of trait-specific markers in very efficiently and cost-effectively way. To improve accessibility for GTA data analysis, we've introduced Fast-GBS.v3, a user friendly bioinformatic pipeline that generates comprehensive outputs from sequencing data. We believe that this high-throughput low-cost approach will greatly facilitate the application of DNA markers as it provides required markers for both MAS and GS in a single assay.
DOI: 10.6084/m9.figshare.963236.v3
title: Age-group estimation in free-ranging African elephants based on acoustic cues of low-frequency rumbles

description: Animal vocal signals are increasingly used to monitor wildlife populations and to obtain estimates of species occurrence and abundance. In future, acoustic monitoring should function not only to detect animals, but also to extract detailed information about populations by discriminating sexes, age groups, social or kin groups, and potentially individuals. Here we show that it is possible to estimate age groups of African elephants (<i>Loxodonta africana</i>) based on acoustic parameters extracted from rumbles recorded under field conditions in a National Park in South Africa. Statistical models reached up to 70% correct classification to four age groups (infants, calves, juveniles and adults) and 95% correct classification when categorizing into two groups (infants/calves lumped into one group vs. adults). The models revealed that parameters representing absolute frequency values have the most discriminative power. Comparable classification results were obtained by fully automated classification of rumbles by high-dimensional features that represent the entire spectral envelope, such as Mel-frequency cepstral coefficient (75% correct classification) and Greenwood function cepstral coefficient (74% correct classification). The reported results and methods provide the scientific foundation for a future system that could potentially automatically estimate the demography of an acoustically monitored elephant group or population.
DOI: 10.6084/m9.figshare.3592860.v1
title: Supplementary Material to RepurposeDB

description: Systematic analyses of drugs, diseases and drug targets in RepurpodeDBSupplementary Data files in Excel format <br>RepurposeDB_BinChe.xlsxRepurposeDB_CGEA.xlsxRepurposeDB_ChemicalProperties.xlsxRepurposeDB_CPDB.xlsxRepurposeDB_DAVID.xlsxRepurposeDB_DiseaseSimilarity.xlsxRepurposeDB_Drug_Food_Target_Networks.xlsxRepurposeDB_EHR_SGA.xlsxRepurposeDB_Enrichr.xlsxRepurposeDB_EvidenceTypes.xlsxRepurposeDB_PanOntology_Mapping.xlsxRepurposeDB_Pharmacoeconomics.xlsxRepurposeDB_PubMed_Articles.xlsxRepurposeDB_SFN_EFN_NA.xlsx<br>Compiled on Aug 16 2016 Compiled by Khader Shameer, Benjamin Glicksberg, Marcus A Badgeley, Tim O’ Connor & Max S Tomlinson<br>Contact us at repurposedb@dudleylab.org | skhadar@gmail.com <br>Dataset accompnying the following manuscript: Systematic analyses of 253 drugs and 1125 disease indications in RepurposeDB reveal chemical, biological and epidemiological factors influencing drug repositioning <br>Khader Shameer<sup>1,</sup> Benjamin S. Glicksberg<sup>1</sup>, Rachel Hodos<sup>1</sup>, Marcus A. Badgeley<sup>1</sup>, Kipp W Johnson<sup>1</sup>, Ben Readhead<sup>1</sup> , Max S. Tomlinson<sup>1</sup>, Timothy O’Connor<sup>1,2</sup>, Riccardo Miotto<sup>1</sup>, Brian A. Kidd<sup>1</sup>, Rong Chen<sup>1</sup>, Avi Ma’ayan<sup>3</sup> and Joel T. Dudley<sup>1,2*</sup> <br><sup>1</sup> Department of Genetics and Genomic Sciences, Harris Center for Precision Wellness, Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, Mount Sinai Health System, New York, New York, USA. <br><sup>2</sup> Boston College, Morrissey College of Arts and Sciences, Chestnut Hill, MA<br><sup>3</sup> Department of Pharmacology and Systems Therapeutics, Icahn School of Medicine at Mount Sinai, Systems Biology Center New York (SBCNY), Mount Sinai Health System, New York, New York, USA. <br><sup>4</sup> Department of Population Health Science and Policy, Icahn School of Medicine at Mount Sinai, Mount Sinai Health System, New York, New York, USA.<br><b><sup>*</sup>Corresponding author:</b> joel.dudley@mssm.edu <br>
DOI: 10.15468/dl.m6bmgk
title: Occurrence Download

description: A dataset containing 351 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Nymphalis io (Linnaeus, 1758)"
 ]
}

 The dataset includes 351 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009678-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.12600128.v1
title: sequence data for ERG11 gene

description: the current data set are the F and R sequence data for ERG11 gene from a fluconazole resistant Candida albicans. three non-synonym mutation was detected in the 4 isolates (E116D, D266E, and V488I ).
DOI: 10.6084/m9.figshare.28788512.v1
title: "Productividad y Competencia: Estrategias para el Crecimiento Sostenible en América Latina y el Caribe"

description: "Productividad y Competencia: Estrategias para el Crecimiento Sostenible en América Latina y el Caribe"<br>
DOI: 10.6084/m9.figshare.22229656.v1
title: Continuous interstitial serum glucose monitoring for term newborns

description: We studied 159 appropriate for gestational age term newborns, who were exclusively breastfed, from 2 hours to 25 hours of life, using a continuous glucose monitoring device which calculates interstitial glycemia every 5 minutes. The study was approved by the Ribeirão Preto Medical Hospital Research Ethics Committee (protocol 10532/2013). All study procedures were described in detail to the mother, father or legal guardian, who gave written informed consent for the participation of their child in the study.
DOI: 10.15468/dl.ytt2re
title: Occurrence Download

description: A dataset containing 534945 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Abies amabilis Douglas ex J.Forbes, Abies grandis (Douglas ex D.Don) Lindl., Abies lasiocarpa (Hook.) Nutt., Abies procera Rehd., Acer macrophyllum Pursh, Alnus rubra Bong., Callitropsis nootkatensis (D.Don) D.P.Little, Picea engelmannii Parry ex Engelm., Picea sitchensis (Bong.) Carrière, Pinus albicaulis Engelm., Pinus contorta Douglas ex Loudon, Pinus monticola Douglas ex D.Don, Pinus ponderosa Douglas ex C.Lawson, Populus balsamifera L., Pseudotsuga menziesii (Mirb.) Franco, Taxus brevifolia Nutt., Thuja plicata Donn ex D.Don, Tsuga heterophylla (Raf.) Sarg., Tsuga mertensiana (Bong.) Carrière)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 534945 records from 1279 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009664-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jn9bpg
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aconitum liangshanicum W.T.Wang"
 ]
}

 The dataset includes 21 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0301740-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ggs2cs
title: Occurrence Download

description: A dataset containing 100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is IND",
 "TaxonKey is Acanthus L."
 ]
}

 The dataset includes 100 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292127-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pmssv9
title: Occurrence Download

description: A dataset containing 42734 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acer monspessulanum L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 42734 records from 443 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0299424-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a78hqa
title: Occurrence Download

description: A dataset containing 11126 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is A checklist of seed plant of Gaoligongshan National Nature Reserve"
 ]
}

 The dataset includes 11126 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052736-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9vtjah
title: Occurrence Download

description: A dataset containing 257 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pseudonestor xanthophrys Rothschild, 1893)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 257 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0301772-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8mspqe
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bleda ugandae Van Someren, 1915)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 38 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292130-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.byrpnd
title: Occurrence Download

description: A dataset containing 1720 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Riccia nigrella DC.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1720 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067595-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f54vkd
title: Occurrence Download

description: A dataset containing 89 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Achyropsis laniceps C.B.Clarke"
 ]
}

 The dataset includes 89 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0299378-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.56cy4q
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Onosma fistulosa I.M.Johnst."
 ]
}

 The dataset includes 31 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052744-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u8sh4m
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aconitum limprichtii Hand.-Mazz."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0301750-220831081235567/datasets/export for details.
DOI: 10.15468/dl.4gafrz
title: Occurrence Download

description: A dataset containing 167 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abrotanella nivigena (F.Muell.) F.Muell."
 ]
}

 The dataset includes 167 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292116-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tubhsj
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Achyrospermum scandens Polhill"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0299426-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jnjmq3
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Onosma griffithii Vatke"
 ]
}

 The dataset includes 36 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052750-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9deyen
title: Occurrence Download

description: A dataset containing 1626 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pyrrhoplectes epauletta (Hodgson, 1836))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1626 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0301754-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kwnudv
title: Occurrence Download

description: A dataset containing 2724 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Arizelocichla striifacies (Reichenow & Neumann, 1895))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2724 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292137-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fw7324
title: Occurrence Download

description: A dataset containing 5883 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polygala sanguinea L."
 ]
}

 The dataset includes 5883 records from 136 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0299379-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tqx2bc
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Onosma farreri I.M.Johnst."
 ]
}

 The dataset includes 19 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052742-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dfkhy4
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rhodacanthis flaviceps Rothschild, 1892)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0301763-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.73j784
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Onosma glomerata Y.L.Liu"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052745-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q9e4w4
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abrotanella rostrata Swenson"
 ]
}

 The dataset includes 22 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292138-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dj82d5
title: Occurrence Download

description: A dataset containing 111 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Zoothera andromedae (Temminck, 1826))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 111 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0301773-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.myvd4y
title: Occurrence Download

description: A dataset containing 169 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Achyrospermum schimperi (Hochst. ex Briq.) Perkins"
 ]
}

 The dataset includes 169 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0299433-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fnfu7u
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aconitum longilobum W.T.Wang"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0301765-220831081235567/datasets/export for details.
DOI: 10.15468/dl.rpmv7y
title: Occurrence Download

description: A dataset containing 1291 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Onosma pseudoarenaria Schur"
 ]
}

 The dataset includes 1291 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052751-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ggafmu
title: Occurrence Download

description: A dataset containing 22289 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rudbeckia hirta L.",
 "Year is greater than or equal to 1981",
 "HasCoordinate is true"
 ]
}

 The dataset includes 22289 records from 230 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292096-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tvcpyb
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acianthera aberrans (Luer) Pupulin & Bogarín"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0299454-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.