cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/h98u3q
title: The Australian Monstrilloida (Crustacea: Copepoda) I. Monstrillopsis Sars, Maemonstrilla Grygier & Ohtsuka, and Australomonstrillopsis gen. nov.

description: This dataset contains the digitized treatments in Plazi based on the original journal article Suárez-Morales, Eduardo, Mckinnon, A. David (2014): The Australian Monstrilloida (Crustacea: Copepoda) I. Monstrillopsis Sars, Maemonstrilla Grygier & Ohtsuka, and Australomonstrillopsis gen. nov. Zootaxa 3779 (3): 301-340, DOI: http://dx.doi.org/10.11646/zootaxa.3779.3.1
DOI: 10.15468/y5vfnj
title: A revision of the spirit loaches, genus Lepidocephalus (Cypriniformes, Cobitidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Deein, Gridsada, Tangjitjaroen, Weerapongse, Page, Lawrence M. (2014): A revision of the spirit loaches, genus Lepidocephalus (Cypriniformes, Cobitidae). Zootaxa 3779 (3): 341-352, DOI: http://dx.doi.org/10.11646/zootaxa.3779.3.2
DOI: 10.15468/ekcz8k
title: Cuccodorodes gen. nov., an apterous Batrisitae from the tropical Himalayas (Coleoptera: Staphylinidae: Pselaphinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Yin, Zi-Wei (2018): Cuccodorodes gen. nov., an apterous Batrisitae from the tropical Himalayas (Coleoptera: Staphylinidae: Pselaphinae). Acta Entomologica Musei Nationalis Pragae (Acta. Ent. Mus. Natl. Pragae) 58 (2): 321-330, DOI: 10.2478/aemnp-2018-0027, URL: http://dx.doi.org/10.2478/aemnp-2018-0027
DOI: 10.15468/qw785f
title: Neotropical species of Meteorus Haliday (Hymenoptera: Braconidae: Meteorinae) parasitizing Arctiinae (Lepidoptera: Noctuoidea: Erebidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Aguirre, Helmuth, Shaw, Scott R. (2014): Neotropical species of Meteorus Haliday (Hymenoptera: Braconidae: Meteorinae) parasitizing Arctiinae (Lepidoptera: Noctuoidea: Erebidae). Zootaxa 3779 (3): 353-367, DOI: http://dx.doi.org/10.11646/zootaxa.3779.3.3
DOI: 10.15468/6qmvjv
title: Exceptionally preserved beetles in a Triassic coprolite of putative dinosauriform origin

description: This dataset contains the digitized treatments in Plazi based on the original journal article Qvarnström, Martin, Fikáček, Martin, Vikberg Wernström, Joel, Huld, Sigrid, Beutel, Rolf G., Arriaga-Varela, Emmanuel, Ahlberg, Per E., Niedźwiedzki, Grzegorz (2021): Exceptionally preserved beetles in a Triassic coprolite of putative dinosauriform origin. Current Biology 31: 1-8, DOI: 10.1016/j.cub.2021.05.015, URL: http://dx.doi.org/10.1016/j.cub.2021.05.015
DOI: 10.6084/m9.figshare.14900181
title: Temperature data of Sebangau Tropical Peatland, Kalimantan, Indonesia

description: The temperature data were collected from a Forested and a Drained area in Sebangau Tropical Peatland, Kalimantan, Indonesia. The detail description can be read from the related paper:<br>Putra, S. S., Holden, J., & Baird, A. J. (2021). The effects of ditch dams on water‐level dynamics in tropical peatlands. Hydrological Processes, 35(5), e14174.<br><br>
DOI: 10.6084/m9.figshare.14899866.v1
title: Taxonomic and functional profiling of the Nero Siciliano pig microbiome

description: Here, we present all dataset obtained by Whole-metagenome shotgun sequencing of Nero Siciliano faecal microbiome.Datasets include taxonomic profiles about Bacteria, Archaea, Viruses, Fungi and Protists as well as the functional information about all pig metagenomes detected<br><br><br>
DOI: 10.6084/m9.figshare.14899866
title: Taxonomic and functional profiling of the Nero Siciliano pig microbiome

description: Here, we present all dataset obtained by Whole-metagenome shotgun sequencing of Nero Siciliano faecal microbiome.Datasets include taxonomic profiles about Bacteria, Archaea, Viruses, Fungi and Protists as well as the functional information about all pig metagenomes detected<br><br><br>
DOI: 10.5281/zenodo.5021328
title: GitSED: GitHub Socially Enhanced Dataset

description: Software Engineering has evolved as a field to study not only the many ways software is created but also how it evolves, becomes successful, is effective and efficient in its objectives, satisfies its quality attributes, and much more. Nonetheless, there are still many open issues during its conception, development, and maintenance phases. Especially, understanding how developers collaborate may help in all such phases, but it is also challenging. Luckily, we may now explore a novel angle to deal with such a challenge: studying the social aspects of software development over social networks. With <em>GitHub</em> becoming the main representative of collaborative software development online tools, there are approaches to assess the follow-network, stargazer-network, and contributors-network. Moreover, having such networks built from real software projects offers support for relevant applications, such as detection of key developers, recommendation of collaboration among developers, detection of developer communities, and analyses of collaboration patterns in agile development. <strong>GitSED</strong> is a dataset based on GitHub that is curated (cleaned and reduced), augmented with external data, and enriched with social information on developers’ interactions. The original data is extracted from GHTorrent (an offline repository of data collected through the GitHub REST API). Our final dataset contains data from up to June 2019. It comprises: <strong>8,556,778</strong> repositories <strong>32,411,674 </strong>developers <strong>6</strong> programming languages (Assembly, JavaScript, Pascal, Python, Ruby, Visual Basic) <strong>13</strong> collaboration metrics There are two previous versions of GitSED, which were originally built for the following conference papers: v2 (May 2017): <em>Gabriel P. Oliveira, Natércia A. Batista, Michele A. Brandão, and Mirella M. Moro. Tie Strength in GitHub Heterogeneous Networks. In Proceedings of the 24th Brazilian Symposium on Multimedia and the Web (WebMedia'18), 2018.</em> v1 (Sep 2015): <em>Natércia A. Batista, Michele A. Brandão, Gabriela B. Alves, Ana Paula Couto da Silva, and Mirella M. Moro. Collaboration strength metrics and analyses on GitHub. In Proceedings of the International Conference on Web Intelligence (WI'17), 2017.</em>
DOI: 10.5281/zenodo.5059928
title: Supplementary data for "Enhancing Resource-based Test Case Generation For RESTful APIs with SQL Handling"

description: Supplement to: <em>Enhancing Resource-based Test Case Generation For RESTful APIs with SQL Handling</em> In this repository, we provide <em>tests</em> and their <em>coverage reports</em> (conducted by Intellij coverage reports) that are used in the Discussion section of the paper.
DOI: 10.5281/zenodo.5059927
title: Supplementary data for "Enhancing Resource-based Test Case Generation For RESTful APIs with SQL Handling"

description: Supplement to: <em>Enhancing Resource-based Test Case Generation For RESTful APIs with SQL Handling</em> In this repository, we provide <em>tests</em> and their <em>coverage reports</em> (conducted by Intellij coverage reports) that are used in the Discussion section of the paper.
DOI: 10.15468/xs6vu4
title: Magnolia zoquepopolucae (subsection Talauma, Magnoliaceae), a new species from Sierra de Santa Marta, Veracruz, Mexico

description: This dataset contains the digitized treatments in Plazi based on the original journal article Vázquez-García, J. Antonio, Castro-Arce, Ernesto De, Muñiz-Castro, Miguel A., Cházaro-Basáñez, Miguel De J. (2012): Magnolia zoquepopolucae (subsection Talauma, Magnoliaceae), a new species from Sierra de Santa Marta, Veracruz, Mexico. Phytotaxa 57 (1): 51-55, DOI: 10.11646/phytotaxa.57.1.7, URL: http://biotaxa.org/Phytotaxa/article/view/phytotaxa.57.1.7
DOI: 10.5281/zenodo.5051874
title: Flex-UM and GA7.0 data for Flex-UM manuscript (Maher and Earnshaw 2021)

description: This archive contains the model output generated for the manuscript Maher and Earnshaw (2021). This archive contains the following 4 files: flexum_fixed.zip flexum_slab.zip ga7_fixed_sst.zip ga7_slab.zip The Isca data for this manuscript is available at https://doi.org/10.5281/zenodo.5017471 The python post-processing and plotting routines for this manuscript are available at https://doi.org/10.5281/zenodo.5005617 The accompanying data is made available under the terms of the Non-Commercial Government Licence. Crown Copyright, Met Office
DOI: 10.17632/26n8thh5g9.4
title: Unprocessed and uncropped Western blot images [Pharmacol. Res. (2021) 166:105474]

description: In our previous study [Cheng et al., Pharmacological Research (2021) 166:105474] , we demonstrated that ROS scavenging by the use of Tiron partially attenuated the DNA damaging effects of BIRC5 down-regulation in MCF7 and MDA-MB-231 cells, as shown by the results of the Western blot analysis (Fig. 3E). Despite the ACTA1 blots (i.e. the blot images) used for the "MCF7 and MDA-MB-231 panels" are completely different and without manipulation; however, these blots "on certain degree" look a bit similar to each other. In order to avoid creating confusion to the reader, we here provide the Raw (unprocessed and uncropped, and with a series of different exposure time) images in order to support the authenticity of the images published (Fig. 3E) in the article. On the images, the first 4 lanes belong to MCF7 and the next 4 lanes belong to MDA-MB-231. Out of these "4 lanes", only the first 3 lanes were used (i.e. Lane 1, 2, 3 and 5, 6, 7) for the figure.
DOI: 10.17632/dvg26mr7fv.1
title: LDHU3_03.1020

description: Amidohydrolase family protein Leishmania donovani (HU3 strain)
DOI: 10.17632/fv6swsvdvm.1
title: LDHU3_03.1050

description: hypothetical protein - conserved Leishmania donovani (HU3 strain)
DOI: 10.17632/fv4xw6mc4f.1
title: Winter Daily Precipitation (Kola region)

description: This dataset contains daily precipitation sums from ERA5 Reanalysis (obtained by summing the data in 1-hour timestep from original ERA5 Renalysis data) for the Kola region (65-75N, 16-45E) for the period 1979-2019. The "real" winter season for the studied area is long, and we used the data for the period from November to April. Each dat-file in the zip-Archive contains daily precipitation data (in mm) for each grid cell 0.5°×0.5°. These data can be used for statistical analysis.
DOI: 10.17632/rnkkhwr2ch.2
title: SPunaDataset

description: This dataset was used in Delph et al 2021 (JGR), but proper acknowledgements should be given to the authors of the original data compilation: Geochemical data: see references in excel file Shear-wave velocity volume (JOINT_Vs_200_50_100.txt): Delph et al. 2017, EPSL P-wave attenuation volume (SPuna_Qp_model.txt): Liang et al. 2014, JGR
DOI: 10.17632/f7xy333xt7.1
title: LDHU3_03.1060

description: MORN repeat-containing protein Leishmania donovani (HU3 strain)
DOI: 10.17632/mwv9m34mxj.1
title: LDHU3_03.1070

description: Eukaryotic translation initiation factor 2 subunit alpha | eIF2alfa Leishmania donovani (HU3 strain)
DOI: 10.17632/89r4s44jyy.1
title: LDHU3_04.0020

description: calcium-translocating P-type ATPase Leishmania donovani (HU3 strain)
DOI: 10.17632/82b5423wh3.1
title: LDHU3_04.0030

description: pteridine transporter Leishmania donovani (HU3 strain)
DOI: 10.17632/y6v7fyw78s.1
title: GQD-BSA complex

description: Resubmission of Design and In-silico study of bioimaging fluorescence Graphene quantum dot-Bovine serum albumin complex synthesized by diimide-activated amidation. 1. Morphological data 2. Spectroscopical data 3. MD simulation
DOI: 10.5281/zenodo.4626675
title: A transcriptome for the early-branching fern Botrychium lunaria enables fine-grained resolution of population structure

description: File S1: Alignment of Botrychium CRY2cA sequences used to infer the genus-level phylogeny. File S2: Peptide sequences used to infer the orthogroups named according species names or identifiers (see Table S1). File S3: Alignments of the orthogroup sequences subset used to infer the phylogenomy. File S4: Output files from modeltest-ng named by orthogroup names. File S5: Output files from raxml-ng named by orthogroup names.
DOI: 10.17632/b2t84kg4wh.1
title: A bi-objective SCND instances

description: Data for a bi-objective sustainable SCND in a server. 15 set of instances of different sizes and features is generated based on the rules described in Eskandarpour et al. 2017 (https://doi.org/10.1016/j.cor.2016.11.012). For each of the 15 problem sets, we generated four types of supply chain patterns corresponding to various realistic situations. For comprehensive description of data instances, the reader is referred to Eskandarpour et al. 2017 . Besides, the explanation of environmental factors generation is explained in the file "Generation of environmental factors" attached.
DOI: 10.15468/p8fr7g
title: A New Species of Ponyfish (Teleostei: Leiognathidae: Photoplagios) from Madagascar, with a Phylogeny for Photoplagios and Comments on the Status of Equula lineolata Valenciennes

description: This dataset contains the digitized treatments in Plazi based on the original journal article SPARKS, JOHN S (2006): A New Species of Ponyfish (Teleostei: Leiognathidae: Photoplagios) from Madagascar, with a Phylogeny for Photoplagios and Comments on the Status of Equula lineolata Valenciennes. American Museum Novitates 3526 (1): 1-20, DOI: 10.1206/0003-0082(2006)3526[1:ANSOPT]2.0.CO;2, URL: http://www.bioone.org/perlserv/?request=get-abstract&doi=10.1206%2F0003-0082(2006)3526%5B1%3AANSOPT%5D2.0.CO%3B2
DOI: 10.15468/6pe25d
title: Taxonomic review of the genus Calyptopsis of Turkey and adjacent areas (Coleoptera: Tenebrionidae: Tentyriini)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Chigray, Svetlana, Nabozhenko, Maxim, Keskin, Bekir, Abdurakhmanov, Gayirbeg (2018): Taxonomic review of the genus Calyptopsis of Turkey and adjacent areas (Coleoptera: Tenebrionidae: Tentyriini). Acta Entomologica Musei Nationalis Pragae (Acta. Ent. Mus. Natl. Pragae) 58 (2): 331-346, DOI: 10.2478/aemnp-2018-0028, URL: http://dx.doi.org/10.2478/aemnp-2018-0028
DOI: 10.15468/z6neq2
title: Cyclotella horstii sp. nov. (Bacillariophyta) from Ivankovskoe reservoir (Volga reservoirs, Russia)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Genkal, Sergei, Kulikovskiy, Maxim (2012): Cyclotella horstii sp. nov. (Bacillariophyta) from Ivankovskoe reservoir (Volga reservoirs, Russia). Phytotaxa 59 (1): 55-63, DOI: 10.11646/phytotaxa.59.1.3, URL: http://biotaxa.org/Phytotaxa/article/view/phytotaxa.59.1.3
DOI: 10.6084/m9.figshare.14900325
title: Masks and atlases

description: This zip file contains a set of gifti files that define the ROIs reported in the manuscript.<br><br>The '<b>Surface_masks</b>' are binary masks that define the vertices we assessed for further analysis (i.e. the 'tonotopic population' as it is referred to in the paper).<br>The '<b>Surface_atlases</b>' define the location of the ROIs defined in the manuscript. Specifically:<br><br>1. A12. R3. RT4. Mbelt5. LBelt6. P17. P2.<br>The data in separate directories are in the original <i>HCP 59k </i>surface format and upsampled to the <i>fsaverage 164k</i> surface format.<br> The data were resampled using the connectome workbench wb_command -label-resample command with <b>BARYCENTRIC</b> resampling.<br><br><br><br><br>
DOI: 10.6084/m9.figshare.14900325.v1
title: Masks and atlases

description: This zip file contains a set of gifti files that define the ROIs reported in the manuscript.<br><br>The '<b>Surface_masks</b>' are binary masks that define the vertices we assessed for further analysis (i.e. the 'tonotopic population' as it is referred to in the paper).<br>The '<b>Surface_atlases</b>' define the location of the ROIs defined in the manuscript. Specifically:<br><br>1. A12. R3. RT4. Mbelt5. LBelt6. P17. P2.<br>The data in separate directories are in the original <i>HCP 59k </i>surface format and upsampled to the <i>fsaverage 164k</i> surface format.<br> The data were resampled using the connectome workbench wb_command -label-resample command with <b>BARYCENTRIC</b> resampling.<br><br><br><br><br>
DOI: 10.6084/m9.figshare.14900274.v1
title: Model parameters

description: This zip file contains a set of gifti files that include the model parameters reported in the manuscript.<br>The data in separate directories are in the original HCP 59k surface format and upsampled to the fsaverage 164k surface format. The data were resampled using the connectome workbench <b>wb_command -metric-resample </b>command with the optional <b>-largest </b>flag and <b>BARYCENTRIC</b> resampling.<br><br>The gifti data arrays are ordered as follows:<br>1. MuThe mean of the gaussian function estimated by the CSS model. Defined over log frequency in Hz.<br>2. SigmaThe standard deviation of the gaussian function. <br>3. ExponentThe exponent parameter (n). <br>4. xval_R2Cross validated R2 of the CSS model<br><br>5. FWHMThe full width half maximum of the exponent-adjusted gaussian functions - calculated as reported in the methods section. <br>6. Speech_xval_R2Cross-validated R2 of the speech-selective model.<br>7. Speech_beta_diffThe difference between the speech and non-speech beta weights of the speech selective model. <br><br>8. PCA_1The first PCA component as reported in the manuscript. <br>9. PCA_2The second PCA component as reported in the manuscript. <br>10. PCA_3The third PCA component as reported in the manuscript. <br><i>Note that, as reported in the paper, items 5 onwards are restricted to the tonotopic region of interest that we define (available as another item in the 'Masks and atlases' item of the repository). </i><br><br>
DOI: 10.6084/m9.figshare.14900274
title: Model parameters

description: This zip file contains a set of gifti files that include the model parameters reported in the manuscript.<br>The data in separate directories are in the original HCP 59k surface format and upsampled to the fsaverage 164k surface format. The data were resampled using the connectome workbench <b>wb_command -metric-resample </b>command with the optional <b>-largest </b>flag and <b>BARYCENTRIC</b> resampling.<br><br>The gifti data arrays are ordered as follows:<br>1. MuThe mean of the gaussian function estimated by the CSS model. Defined over log frequency in Hz.<br>2. SigmaThe standard deviation of the gaussian function. <br>3. ExponentThe exponent parameter (n). <br>4. xval_R2Cross validated R2 of the CSS model<br><br>5. FWHMThe full width half maximum of the exponent-adjusted gaussian functions - calculated as reported in the methods section. <br>6. Speech_xval_R2Cross-validated R2 of the speech-selective model.<br>7. Speech_beta_diffThe difference between the speech and non-speech beta weights of the speech selective model. <br><br>8. PCA_1The first PCA component as reported in the manuscript. <br>9. PCA_2The second PCA component as reported in the manuscript. <br>10. PCA_3The third PCA component as reported in the manuscript. <br><i>Note that, as reported in the paper, items 5 onwards are restricted to the tonotopic region of interest that we define (available as another item in the 'Masks and atlases' item of the repository). </i><br><br>
DOI: 10.6084/m9.figshare.14900196
title: Pycortex directory for HCP 59k average subject

description: This contains a standard pycortex (https://gallantlab.github.io/pycortex/) database folder the HCP average subject (59k vertices per hemisphere) including a flatmap.<br><br>The name of the subject is HCP_999999 and can this directory can be directly dropped into a pycortex database.<br>The model parameters (deposited as other items) in this project can be loaded into python and visualised on this surface.
DOI: 10.15468/2k84c3
title: A Revision of the Malagabdellinae (Arhynchobdellida: Domanibdellidae), with a Description of a New Species, Malagabdella niarchosorum, from Ranomafana National Park, Madagascar

description: This dataset contains the digitized treatments in Plazi based on the original journal article BORDA, ELIZABETH (2006): A Revision of the Malagabdellinae (Arhynchobdellida: Domanibdellidae), with a Description of a New Species, Malagabdella niarchosorum, from Ranomafana National Park, Madagascar. American Museum Novitates 3531 (1): 1-16, DOI: 10.1206/0003-0082(2006)3531[1:AROTMA]2.0.CO;2, URL: http://www.bioone.org/perlserv/?request=get-abstract&doi=10.1206%2F0003-0082(2006)3531%5B1%3AAROTMA%5D2.0.CO%3B2
DOI: 10.15468/ehm3sw
title: Pempheris bexillon, a new species of sweeper (Teleostei: Pempheridae) from the Western Indian Ocean

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mooi, Randall D., Randall, John E. (2014): Pempheris bexillon, a new species of sweeper (Teleostei: Pempheridae) from the Western Indian Ocean. Zootaxa 3780 (2): 388-398, DOI: http://dx.doi.org/10.11646/zootaxa.3780.2.10
DOI: 10.5281/zenodo.5045374
title: Confocal micrographs and complete dataset of neuromuscular junction morphology of pelvic limb muscles of the pig (Sus scrofa)

description: This dataset entails the complete NMJ dataset for three pigs and the three muscles analysed for the publication "Comparative anatomy of the mammalian neuromuscular junction" (https://doi.org/10.1111/joa.13260). This includes spreadsheets (.csv) containing morphometric variables of neuromuscular junction morphology generated using NMJ-morph or aNMJ-morph, as well as muscle fibre diameter (MFD) data for completeness. The three muscles analysed are: extensor digitorum longus (EDL), peroneus longus (PL) and soleus (S). Data contains raw microscope images (.nd2), thresholded and cleaned images of pre- and post-synapse (.tif) and the thresholded and cleaned images of the intermediate muscle endplate (.tif) for the muscle soleus since the "aNMJ-morph" macro saves this intermediate image for measurement of endplate variables. The full data set description is in the readme_file.txt.
description: This dataset is of interest for (a) beginners wanting to familiarise themselves with NMJ-morph (https://doi.org/10.1016/j.celrep.2017.11.008) or aNMJ-morph (https://doi.org/10.1098/rsos.200128) as the raw data provides the opportunity for comparison; (b) researchers in the field of comparative anatomy wanting to compare their species' NMJ-morphology to pig morphology; (c) researchers in the field of neuromuscular diseases using porcine models of disease who want to use external control data of the healthy porcine/pig neuromuscular junction; (d) researchers developing machine learning algorithms for analysis of NMJ-analysis who are looking for training datasets.
description: {"references": ["Jones, R.A., Reich, C.D., Dissanayake, K.N., Kristmundsdottir, F., Findlater, G.S., Ribchester, R.R. et al (2016) NMJ-morph reveals prin- cipal components of synaptic morphology influencing structure\u2013function relationships at the neuromuscular junction. Open Biology, 6(12), 160240", "Jones, R.A., Harrison, C., Eaton, S.L., Llavero Hurtado, M., Graham, L.C., Alkhammash, L. et al (2017) Cellular and molecular anatomy of the human neuromuscular junction. Cell Reports, 21(9), 2348\u20132356", "Minty G, Hoppen A, Boehm I, et al. ANMJ-morph: A simple macro for rapid analysis of neuromuscular junction morphology. R Soc Open Sci. 2020;7(4):200128.", "Boehm I, Alhindi A, Leite AS, et al. Comparative anatomy of the mammalian neuromuscular junction. J Anat. 2020;237:827\u2013836."]}