cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.12953389
title: Fragment coordinates from shallow WGS of colorectal cancer from patients in Pakistan

description: BED files indicating fragment coordinates from whole genome sequencing of FFPE tumors and adjacent normal tissue samples. Sequencing data was aligned to hg19 using bwa-mem, prior to conversion to BED format. Tumor samples are indicated with suffix "_T" and normal samples are indicated with suffix "_N"
DOI: 10.5281/zenodo.11371499
title: Annotation of the genome assembly Noccaea caerulescens cira v2.3

description: The N. caerulescens cira genome assembly v2.3 was annotated using the OmicsBox suite v. 1.4.12 (www.biobam.com/omicsbox). Repetitive elements were masked using the Repeat Masking tool based on RepeatMasker v. 4.0.9 with the custom repetitive elements sequence library generated with RepeatModeler v. 2.0.1. Genes were then annotated using the Eukaryotic Gene Finder tool, based on AUGUSTUS v. 3.4.0 in which we used Arabidopsis thaliana as a model to predict coding sequences and UTR and use N. caerulescens Firmiensis RNA-Seq samples as RNA-Seq hints. The coding sequences of annotated genes were blasted (Blastp; E-value ≤ 10-5) to the ref seq_protein database limited to the Brassicaceae family and classified into protein families using InterProScan. Putative functions were annotated by Gene Ontology using Blast2GO. In addition, the function of predicted proteins was annotated with Mercator4 v2.0
DOI: 10.5281/zenodo.15388080
title: Meteorological data from multiple weather stations in Narsarsuaq and Narsaq, South Greenland during Greenfjord 2023

description: Abstract and dataset contents:

This dataset contains meteorological data in 15 min time resolution from an ATMOS 41 Gen 2 All-in-One weather station (METER group, Pullman, USA). Measurements were conducted at three difference sites, two sites near Narsarsuaq and two in Narsaq, Greenland. The co-ordinates of the Narsarsuaq col and plain sites are 61.2061254 N, 45.3118504 W, 300 m above sea level , and 61.200028 N, 45.328000 W, 25 m above sea level. The Narsaq hill site was at 60.9210617 N, 46.0274668 W, 372 m above sea level, while the Narsaq International Research Station (NIRS) site was at 60.9157503°, -46.0533263 and 17 m above sea level.

Metadata for the Narsarsuaq sites is provided for each site in files 'metadata_weather_stations_coll.docx' and 'metadata_weather_stations_plain.docx' while metadata for the Narsaq sites is provided for each site in files 'metadata_weather_stations_hill.docx' and 'metadata_weather_stations_nirs.docx'. Briefly, the dataset files (meteo_coll.csv, meteo_plain.csv, meteo_hill.csv and meteo_nirs.csv) includes:



Datetime

Solar radiation (W m-2)

Atmospheric pressure (hPa)

Air temperature (degC)

Wind direction (deg)

Horizontal wind speed and gust speed (m s-1)

Precipitation (mm)

Precipitation rate maximum (mm hr-1)

Relative humidity (%)

Vapor pressure and vapor pressure deficit (kPa)


Funding acknowledgements:

This work was supported by funding from the Swiss National Science Foundation grant no. 200021_212101, the Swiss Polar Institute grant no. SPI-FLAG-2021-002 Greenfjord, and the ENAC Flagship 2022 ECO-Plains.
DOI: 10.5281/zenodo.14018212
title: SERENA EJPSOIL PL SOC LOSS SOC CONTENT

description: General description of SERENA

The internal EJP SOIL project SERENA contributed to the evaluation of soil multifunctionality aiming at providing assessment tools for land planning and soil policies at different scales. By co-working with relevant stakeholders, the project provided co-developed indicators and associated cookbooks to assess and map them, to report both on soil degradation, soil-based ecosystem services and their bundles, under actual conditions and for climate and land-use changes, at the regional, national, and European scales.

Files description

Data was prepared as a result of SERENA EJP SOIL. The attached files are a part of the analysis of Assessment of Soil Threats and Ecosystem Services from each MS with the harmonized procedures. SERENA deliverable 3.3 (https://doi.org/10.5281/zenodo.13991087). Data was prepared based on the DSM approach using QRF algorithm. We used over 40000 points to create maps of SOC content for 2018 and climate change RCP 4.5 and 8.5 scenarios (https://opendap.4tu.nl/thredds/catalog/data2/uuid/e940ec1a-71a0-449e-bbe3-29217f2ba31d/catalog.html) to  predict SOC content for 2050.
description: The data are derived from the calculation of indicators based on a standard methodology established as part of the EJP Soil SERENA programme. Please keep in mind that:






It is the result of a modelling exercise and does not necessarily reflect reality.




Despite the efforts made to provide reliable data, the results may contain inconsistencies, depending in particular on the raw data available and level of accuracy of the techniques chosen and their prior knowledge .




It is necessary to consider how the results have been obtained in order to decide on their relevance in relation to the intended purpose of reuse.




These results are interesting from a scientific point of view, but their use for environmental management and policy issues should be done keeping the previous aspects in mind and complementing when necessary the provided results with the best available data.





==> Finally, it is the responsibility of the users of this information to decide whether it is appropriate to use these data and whether the data meet their needs. The authors of this resource can in no way be held responsible for the results obtained from the use of this data.
DOI: 10.5281/zenodo.15428289
title: A Multiscale Computational and Experimental Study of TBA–Fluorescent Probes for Protein Sensing: Photobasicity Over Twisted Intramolecular Charge Transfer as a New Mechanism for Protein Induced Fluorescence Enhancement
DOI: 10.5281/zenodo.15524649
title: Data for "Chirality encoding in resonant metasurfaces governed by lattice symmetries"

description: # Data and code for "Chirality encoding in resonant metasurfaces governed by lattice symmetries"

 

## Contents

 

* `Simulations`: Circularly polarized light transmission data for different combinations of resonator and lattice symmetries calculated with CST Studio Suite

* `Experiment`: Circularly polarized light transmission and reflection data for different combinations of resonator and lattice symmetries measured with FTIR.

 

## Description of the data

 

The data are organized as follows:

 

Each configuration (resonator vs lattice symmetry) has transmission/reflection data stored separately in a .mat file

each .mat file has 3 fields:

"angle" vector (rotation angle of the resonator)

"wavenumber" vector (excitation light wavenumber)

"T" matrix (transmission/reflection value for each angle, wavenumber pair).

 

a sample matlab script that allows to plot data presented in the figures of the main manuscript and SI is as follows:

(using data in Simulations/3Fold_SquareLattice as an example)

 

TR=load('3S_ud_T_R.mat');TL=load('3S_ud_T_L.mat');CD=(TR.T-TL.T)./(TR.T+TL.T);

[x,y]=meshgrid(TR.wavenumber,TR.angle);pcolor(x,y,CD); shading flat%colormap('redblue'); %requires custom colormap available e.g. at https://github.com/ultralytics/functions-matlab/blob/main/plotting/colormaps/redblue.m
DOI: 10.6084/m9.figshare.29432396
title: Source data for "<i>Chen et al. </i>Querying functional and structural niches on spatial transcriptomics data"

description: We provided the datasets used in the paper "Querying functional and structural niches on spatial transcriptomics data".
DOI: 10.6084/m9.figshare.29432396.v1
title: Source data for "<i>Chen et al. </i>Querying functional and structural niches on spatial transcriptomics data"

description: We provided the datasets used in the paper "Querying functional and structural niches on spatial transcriptomics data".
DOI: 10.5281/zenodo.7957067
title: Data for "Quantum Oscillations of the Quasiparticle Lifetime in a Metal"

description: Datasets shown in the article "Quantum Oscillations of the Quasiparticle Lifetime in a Metal" published in Nature.
DOI: 10.5281/zenodo.7957066
title: Data for "Quantum Oscillations of the Quasiparticle Lifetime in a Metal"

description: Datasets shown in the article "Quantum Oscillations of the Quasiparticle Lifetime in a Metal" published in Nature.
DOI: 10.15468/dl.fwfpkn
title: Occurrence Download

description: A dataset containing 1739 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lepomis gibbosus (Linnaeus, 1758)",
 "Country is Spain",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1739 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078749-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q8h786
title: Occurrence Download

description: A dataset containing 237 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Conium maculatum L.",
 "Country is Czechia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 237 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078750-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x9cqdq
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Conium maculatum L.",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078751-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fv26p2
title: Occurrence Download

description: A dataset containing 207 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Conium maculatum L.",
 "Country is Mexico",
 "HasCoordinate is true"
 ]
}

 The dataset includes 207 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078752-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9fa7pa
title: Occurrence Download

description: A dataset containing 352 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carassius auratus (Linnaeus, 1758)",
 "Country is Mexico",
 "HasCoordinate is true"
 ]
}

 The dataset includes 352 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078755-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.477vav
title: Occurrence Download

description: A dataset containing 1707 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carassius auratus (Linnaeus, 1758)",
 "Country is Spain",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1707 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078754-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m7byzn
title: Occurrence Download

description: A dataset containing 2061 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Conium maculatum L.",
 "Country is Russian Federation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2061 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078758-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xskn2y
title: Occurrence Download

description: A dataset containing 805 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Conium maculatum L.",
 "Country is Ukraine",
 "HasCoordinate is true"
 ]
}

 The dataset includes 805 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078759-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mq9sdt
title: Occurrence Download

description: A dataset containing 1004 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Conium maculatum L.",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1004 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078757-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3qmjtv
title: Occurrence Download

description: A dataset containing 612 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Esox lucius Linnaeus, 1758",
 "Country is Spain",
 "HasCoordinate is true"
 ]
}

 The dataset includes 612 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078761-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nw4kg2
title: Occurrence Download

description: A dataset containing 25540 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Conium maculatum L.",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 25540 records from 165 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078762-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ggs524
title: Occurrence Download

description: A dataset containing 1597 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Micropterus salmoides (Lacepède, 1802)",
 "Country is Spain",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1597 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078764-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sb6yhv
title: Occurrence Download

description: A dataset containing 6936 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Material citation, Specimen, Occurrence evidence)",
 "Continent is one of (North America, South America)",
 "OccurrenceStatus is Present",
 "TaxonKey is Beryciformes"
 ]
}

 The dataset includes 6936 records from 118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078765-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15523021
title: Bulky phosphine ligands promote palladium-catalyzed protodeboronation

description: Dataset for the HPLC DAD for HTE and kinetic monitoring, in original Agilent ChemStation data format



HH_PDB_HTE.zip    raw, unprocessed post-reaction analysis of HTE part of condition screening of PDB

HH_PDB_kinetics.zip    raw, unprocessed online monitoring of PDB
DOI: 10.5281/zenodo.15523022
title: Bulky phosphine ligands promote palladium-catalyzed protodeboronation

description: Dataset for the HPLC DAD for HTE and kinetic monitoring, in original Agilent ChemStation data format



HH_PDB_HTE.zip    raw, unprocessed post-reaction analysis of HTE part of condition screening of PDB

HH_PDB_kinetics.zip    raw, unprocessed online monitoring of PDB
DOI: 10.15468/dl.av9v6f
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (French Guiana, Brazil, Venezuela (Bolivarian Republic of), Suriname, Guyana, Colombia, Ecuador, Peru, Paraguay)",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (bc092ff0-02e4-11dc-991f-b8a03c50a862, 1928bdf0-f5d2-11dc-8c12-b8a03c50a862, 28eb1a3f-1c15-4a95-931a-4af90ecb574d, 396d5f30-dea9-11db-8ab4-b8a03c50a862, 4f1aa16c-ac1f-4e25-95fa-70bd71b7a0b4, ccd1ddc0-6c21-11de-8224-b8a03c50a862, 2cd829bb-b713-433d-99cf-64bef11e5b3e)",
 "TaxonKey is Diclidurus scutatus Peters, 1869"
 ]
}

 The dataset includes 39 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078768-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sc3rqq
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Foeniculum vulgare Mill.",
 "Country is Cuba",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078772-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4takp9
title: Occurrence Download

description: A dataset containing 184 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Foeniculum vulgare Mill.",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 184 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078769-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j3rgx7
title: Occurrence Download

description: A dataset containing 179 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Geranium yeoi Aedo & Muñoz Garm."
 ]
}

 The dataset includes 179 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102520-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pc2v5z
title: Occurrence Download

description: A dataset containing 1198 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Costaria costata C.Ag.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1198 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002398-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.enzd4y
title: Occurrence Download

description: A dataset containing 231 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Neocrepidodera brevicollis (Daniel, 1904))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 231 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043088-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t3hmzs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Apolychrosis candidus Pogue, 1986",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is Poland",
 "Country is Poland"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0393311-210914110416597/datasets/export for details.
DOI: 10.15468/dl.ng5g6b
title: Occurrence Download

description: A dataset containing 614 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chelus fimbriata (Schneider, 1783)"
 ]
}

 The dataset includes 614 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072199-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1yridh
title: Occurrence Download

description: A dataset listing the 5123 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Syrphidae"
 ]
}

 The dataset's 5123 records were derived from 790 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002401-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6jtu6x
title: Occurrence Download

description: A dataset containing 11384 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Records of the Queensland Plant Pathology Herbarium"
 ]
}

 The dataset includes 11384 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0119531-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vyvfws
title: Occurrence Download

description: A dataset listing the 709 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "Year 1000-2019",
 "Geometry POLYGON((-80.336 35.794,-79.975 35.794,-79.975 35.943,-80.336 35.943,-80.336 35.794))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 709 records were derived from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020227-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.spcd6b
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 {
 "or" : [
 "Geometry POLYGON((-77.25362 8.54396,-77.22501 8.54396,-77.22501 8.6977,-77.25362 8.6977,-77.25362 8.54396))",
 "Geometry POLYGON((-77.53134 8.14265,-76.90952 8.14265,-76.90952 8.70515,-77.53134 8.70515,-77.53134 8.14265))"
 ]
 },
 "TaxonKey is Myroxylon balsamum (L.) Harms"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133604-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2d35aw
title: Occurrence Download

description: A dataset containing 1574 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arenaria erinacea Boiss.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1574 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072192-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.