cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.nzcmk7
title: Occurrence Download

description: A dataset containing 286 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Macao, China, Chinese Taipei)",
 "OccurrenceStatus is Present",
 "TaxonKey is Metasequoia glyptostroboides"
 ]
}

 The dataset includes 286 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006797-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yukkc7
title: Occurrence Download

description: A dataset containing 1194 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oxyrhopus petola"
 ]
}

 The dataset includes 1194 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006798-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2afuz6
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oxyrhopus leucomelas"
 ]
}

 The dataset includes 76 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006801-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mckft3
title: Occurrence Download

description: A dataset containing 283 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oxyrhopus vanidicus"
 ]
}

 The dataset includes 283 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006800-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30702425
title: Processed snRNA-seq data from wild-type and <i>Pink1</i>-deficient mouse gut

description: This Figshare record contains processed single-nucleus RNA-seq (snRNA-seq) objects and analysis code used in the study of wild-type (WT) and <i>Pink1</i> knockout (<i>Pink1</i> KO) mouse gut.Files:<br><b>WT_Pink1KO.rds</b>: Seurat object containing QC-filtered and processed nuclei from WT and <i>Pink1</i> KO gut samples.<br><b>Validation_WT_Pink1KO.rds</b>: Seurat object after label transfer and validation using an external public reference dataset, including final cell-type annotations.<br><b>Code.R</b>: R script used for preprocessing, quality control, integration of WT and <i>Pink1</i> KO samples, label transfer from the public reference dataset, and generation of the main figures.
DOI: 10.6084/m9.figshare.30702425.v1
title: Processed snRNA-seq data from wild-type and <i>Pink1</i>-deficient mouse gut

description: This Figshare record contains processed single-nucleus RNA-seq (snRNA-seq) objects and analysis code used in the study of wild-type (WT) and <i>Pink1</i> knockout (<i>Pink1</i> KO) mouse gut.Files:<br><b>WT_Pink1KO.rds</b>: Seurat object containing QC-filtered and processed nuclei from WT and <i>Pink1</i> KO gut samples.<br><b>Validation_WT_Pink1KO.rds</b>: Seurat object after label transfer and validation using an external public reference dataset, including final cell-type annotations.<br><b>Code.R</b>: R script used for preprocessing, quality control, integration of WT and <i>Pink1</i> KO samples, label transfer from the public reference dataset, and generation of the main figures.
DOI: 10.15468/dl.ktv5qq
title: Occurrence Download

description: A dataset containing 79682 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thunnus albacares",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1990",
 "Year is less than or equal to 1999"
 ]
}

 The dataset includes 79682 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006769-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30702452
title: Protocatechuic Acid alleviates D-gal-induced renal senescence and injury in mice by regulating taurine metabolism

description: Protocatechuic acid (PCA), a natural phenolic compound with antioxidant and anti-inflammatory properties, has been proposed as a potential therapeutic agent against aging-related diseases. This study investigated the protective effects of PCA on D-galactose (D-gal)-induced renal aging in mice. PCA administration significantly improved renal function, alleviated oxidative stress and inflammatory responses, and ameliorated histopathological abnormalities. Biochemical analyses revealed reductions in serum AGEs, β-galactosidase, creatinine, and BUN, accompanied by restoration of antioxidant enzyme activities and suppression of proinflammatory cytokines. Transcriptomic and metabolomic profiling further demonstrated that PCA reversed D-gal-induced molecular alterations, with integrated multi-omics analysis identifying taurine and hypotaurine metabolism as the key pathway mediating its renoprotective effects. Western blot validation confirmed PCA’s regulation of GAD1 and CSAD, enzymes essential for taurine biosynthesis. Collectively, these findings provide novel mechanistic insights into renal aging and highlight PCA as a promising natural agent for delaying kidney senescence through modulation of taurine metabolism.
DOI: 10.6084/m9.figshare.30702452.v1
title: Protocatechuic Acid alleviates D-gal-induced renal senescence and injury in mice by regulating taurine metabolism

description: Protocatechuic acid (PCA), a natural phenolic compound with antioxidant and anti-inflammatory properties, has been proposed as a potential therapeutic agent against aging-related diseases. This study investigated the protective effects of PCA on D-galactose (D-gal)-induced renal aging in mice. PCA administration significantly improved renal function, alleviated oxidative stress and inflammatory responses, and ameliorated histopathological abnormalities. Biochemical analyses revealed reductions in serum AGEs, β-galactosidase, creatinine, and BUN, accompanied by restoration of antioxidant enzyme activities and suppression of proinflammatory cytokines. Transcriptomic and metabolomic profiling further demonstrated that PCA reversed D-gal-induced molecular alterations, with integrated multi-omics analysis identifying taurine and hypotaurine metabolism as the key pathway mediating its renoprotective effects. Western blot validation confirmed PCA’s regulation of GAD1 and CSAD, enzymes essential for taurine biosynthesis. Collectively, these findings provide novel mechanistic insights into renal aging and highlight PCA as a promising natural agent for delaying kidney senescence through modulation of taurine metabolism.
DOI: 10.57783/hze9-kd84
title: Arkansas HCUP
DOI: 10.57783/qn9n-zf32
title: Arkansas HCUP
DOI: 10.57783/0w18-9v26
title: Nevada HCUP
DOI: 10.57783/v8bm-my19
title: Nevada HCUP
DOI: 10.57783/t3qf-9379
title: Alaska HCUP
DOI: 10.57783/w53b-fw39
title: Alaska HCUP
DOI: 10.15468/dl.4en5sn
title: Occurrence Download

description: A dataset containing 2609 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cephalotrigona zexmeniae"
 ]
}

 The dataset includes 2609 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006806-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w5dges
title: Occurrence Download

description: A dataset containing 47041 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trichogrammatidae"
 ]
}

 The dataset includes 47041 records from 133 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006805-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rjs9a6
title: Occurrence Download

description: A dataset containing 16066 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spodoptera frugiperda"
 ]
}

 The dataset includes 16066 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006807-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fhjabe
title: Occurrence Download

description: A dataset containing 4774787 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (South America, North America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Streptopelia decaocto",
 "Year 2006-2025"
 ]
}

 The dataset includes 4774787 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006777-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uwt5vd
title: Occurrence Download

description: A dataset containing 5608 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Partamona bilineata"
 ]
}

 The dataset includes 5608 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006810-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30702494
title: Data associated with ecosystem stability

description: We conducted a field survey of plant and soil biota (bacteria, fungi, and nematodes) and estimated the temporal ecosystem stability of normalized vegetation index in 379 plots along an aridity gradient at a 1200 km × 1200 km area in the Qinghai-Tibetan Plateau.
DOI: 10.6084/m9.figshare.30702494.v1
title: Data associated with ecosystem stability

description: We conducted a field survey of plant and soil biota (bacteria, fungi, and nematodes) and estimated the temporal ecosystem stability of normalized vegetation index in 379 plots along an aridity gradient at a 1200 km × 1200 km area in the Qinghai-Tibetan Plateau.
DOI: 10.15468/dl.wp3b7x
title: Occurrence Download

description: A dataset containing 126132 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.27_1",
 "OccurrenceStatus is Present",
 "Year 2012-2024"
 ]
}

 The dataset includes 126132 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006786-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17705722
title: scRNA data
DOI: 10.5281/zenodo.17705723
title: scRNA data
DOI: 10.15468/dl.yuudk9
title: Occurrence Download

description: A dataset containing 3123568 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Observation, Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Myrtales",
 "Year 2013-2024"
 ]
}

 The dataset includes 3123568 records from 4667 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006736-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4tgb5u
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Falcataria moluccana",
 "Country is Tonga",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024675-250811113504898/datasets/export for details.
DOI: 10.25345/c5j09wh2b
title: MassIVE MSV000097931 - Glycosylation Signatures of Thyroglobulin in Papillary Thyroid Carcinoma
title: The proteomic data obtained from an LC-MS-MS analysis of thyroid gland tissues.
DOI: 10.6084/m9.figshare.29109209
title: CTCF_prol_1

description: NU1 cells Chipseq data
DOI: 10.15468/dl.knykkp
title: Occurrence Download

description: A dataset containing 145562 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Rhynchospora alba"
 ]
}

 The dataset includes 145562 records from 684 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049237-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17976540
title: ARBOREA: archaeobotanical records of Olea and Vitis from published sources

description: This repository collects all occurences of plant macro-remains of Olea europaea and Vitis vinifera in archaeological sites in central Italy, gathered from published sources. The data model has three tables (1→N cascades):

sites (polygons) → contexts (polygons) → samples (points)

1) Where to find the data




/data contains two subfolders with the same content in two formats:

data/ geojson/ # spatial + attributes (for the web map / GIS) csv/ # attributes only (for spreadsheets / scripts)

 

Why two formats?



 





GeoJSON (.geojson): self-contained spatial features. Coordinates are [longitude, latitude] (WGS84 / EPSG:4326).

Use in web mapping (Leaflet/Mapbox), GIS (QGIS), or any geo-enabled workflow.




CSV (.csv): tabular attributes only (no geometry).

Use for quick filtering, stats, R/Python analysis, spreadsheets, etc.

The join keys (fid, parent_id, context_id) are present so you can rebuild the hierarchy.



Files (both in geojson/ and csv/): sites.*,contexts. *,samples. *

You can browse and filter the dataset on the GitHub Pages viewer:

👉 https://arborea-s-home.github.io/vitis_olea

Features:



modern base map (CartoDB Positron)

green polygons for sites and contexts

round species icons for samples (Vitis and Olea)

per-species marker clustering with counts

sidebar filters (taxa, remain type) and a timeline by ICCD phases

tidy pop-ups with key attributes and counts
DOI: 10.5281/zenodo.17976541
title: ARBOREA: archaeobotanical records of Olea and Vitis from published sources

description: This repository collects all occurences of plant macro-remains of Olea europaea and Vitis vinifera in archaeological sites in central Italy, gathered from published sources. The data model has three tables (1→N cascades):

sites (polygons) → contexts (polygons) → samples (points)

1) Where to find the data




/data contains two subfolders with the same content in two formats:

data/ geojson/ # spatial + attributes (for the web map / GIS) csv/ # attributes only (for spreadsheets / scripts)

 

Why two formats?



 





GeoJSON (.geojson): self-contained spatial features. Coordinates are [longitude, latitude] (WGS84 / EPSG:4326).

Use in web mapping (Leaflet/Mapbox), GIS (QGIS), or any geo-enabled workflow.




CSV (.csv): tabular attributes only (no geometry).

Use for quick filtering, stats, R/Python analysis, spreadsheets, etc.

The join keys (fid, parent_id, context_id) are present so you can rebuild the hierarchy.



Files (both in geojson/ and csv/): sites.*,contexts. *,samples. *

You can browse and filter the dataset on the GitHub Pages viewer:

👉 https://arborea-s-home.github.io/vitis_olea

Features:



modern base map (CartoDB Positron)

green polygons for sites and contexts

round species icons for samples (Vitis and Olea)

per-species marker clustering with counts

sidebar filters (taxa, remain type) and a timeline by ICCD phases

tidy pop-ups with key attributes and counts
DOI: 10.15468/dl.ecd5zy
title: Occurrence Download

description: A dataset containing 806 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-52.48783 -1.17852,-55.82245 -1.22394,-55.99317 -1.46415,-55.74657 -1.83074,-55.03838 -1.89394,-54.75384 -1.93818,-54.34058 -2.03287,-53.36029 -1.73918,-53.08856 -1.68865,-52.94953 -1.59389,-52.75956 -1.54178,-52.53838 -1.51019,-52.42147 -1.41543,-52.48783 -1.17852))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 806 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031074-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jxepw3
title: Occurrence Download

description: A dataset containing 4838 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "GadmGid is USA.51_1",
 "TaxonKey is one of (Canis lupus, Cervus canadensis)",
 "Year 1990-2025"
 ]
}

 The dataset includes 4838 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031075-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ueh5f3
title: Occurrence Download

description: A dataset containing 754 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Living Specimen, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dalbergia melanoxylon",
 "Year 1950-2025"
 ]
}

 The dataset includes 754 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031079-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2fmgxw
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hylodes dactylocinus"
 ]
}

 The dataset includes 20 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031080-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qvcum9
title: Occurrence Download

description: A dataset containing 5276 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (USA.41_1, USA.34_1, USA.43_1, USA.47_1, USA.49_1)",
 "TaxonKey is Ursus americanus"
 ]
}

 The dataset includes 5276 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031082-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c56m33h34
title: MassIVE MSV000099889 - Systematic and Quantitative Investigation of Newly Synthesized Proteins Reveals Distinct Ion Homeostasis and Mitochondrial Changes between Cuproptosis and Ferroptosis in Human Cells
title: To better understand ferroptosis and cuproptosis, here we systematically and quantitatively analyzed newly synthesized proteins (NSPs), which reflect rapid changes in gene expression during cell death without the interference from the existing proteins. Integrating metabolic labeling with multiplexed proteomics, the results revealed that both types of cell death shared some common features, such as mitochondrial disorder and gene expression suppression. Furthermore, different changes between them were also found.
DOI: 10.5281/zenodo.17601289
title: Pamgene Kinase analysis of mouse Ubc13-deficient macrophages stimulated with poly(I:C) or LPS treatment

description: This dataset contains PamGene PTK and STK kinase activity profiling of primary mouse bone-marrow–derived macrophages (BMDMs). Wild-type and Ubc13-deficient (LysM-Cre; Ubc13^fl/fl) macrophages were left untreated or stimulated with poly(I:C) or LPS. Lysates were prepared from 3 × 10⁶ BMDMs per condition and analysed on PTK (196 peptides) and STK (144 peptides) PamChip arrays according to the manufacturer’s instructions.

Signal intensities were processed using PamGene BioNavigator, followed by COMBAT normalization and Upstream Kinase Analysis (UKA) to infer differential kinase activity between genotypes and treatments. The dataset includes normalized peptide intensities, inferred kinase scores, and condition metadata. These data accompany the corresponding manuscript and enable re-analysis of kinase activity changes in innate immune signalling.
DOI: 10.5281/zenodo.17601288
title: Pamgene Kinase analysis of mouse Ubc13-deficient macrophages stimulated with poly(I:C) or LPS treatment

description: This dataset contains PamGene PTK and STK kinase activity profiling of primary mouse bone-marrow–derived macrophages (BMDMs). Wild-type and Ubc13-deficient (LysM-Cre; Ubc13^fl/fl) macrophages were left untreated or stimulated with poly(I:C) or LPS. Lysates were prepared from 3 × 10⁶ BMDMs per condition and analysed on PTK (196 peptides) and STK (144 peptides) PamChip arrays according to the manufacturer’s instructions.

Signal intensities were processed using PamGene BioNavigator, followed by COMBAT normalization and Upstream Kinase Analysis (UKA) to infer differential kinase activity between genotypes and treatments. The dataset includes normalized peptide intensities, inferred kinase scores, and condition metadata. These data accompany the corresponding manuscript and enable re-analysis of kinase activity changes in innate immune signalling.
DOI: 10.18150/cyg4sj
title: Analysis of microstructure, tribological properties and cytotoxicity of micro-arc oxidation-produced coatings on titanium in silicate-based electrolyte

description: The package contains dataset to article entitled "Low-voltage micro-arc oxidation of plastically deformed titanium in silicate-based electrolytes: microstructure, tribological properties and cytocompatibility"The files present the results of investigations of titanium oxide coatings fabricated with micro-arc oxidation method by using silicate-based electrolytes performed with scanning (SEM) and transmission electron microscopes (TEM), tribotester (reciprocating wear test), confocal laser scanning microscope (CLSM; cytotoxicity) as well as X-ray diffractometer (XRD; phase analysis). The files contain photographs of the samples surface topography, cross-sections/microstructures, chemical analysis of elements distribution, values of coefficient of friction and wear rate, images of morphologies of osteoblasts and XRD patterns.This data is presented in the form of .odt files, readable with e.g. Microsoft Word, .tiff/.png/.bmp files readable with popular computer programs like IrfanView and .xls files readable with e.g. Microsoft Excel.