cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10000430
title: RNAseq of PBMC and sorted subpopulations (CD4, CD8, CD14, CD19) from children

description: The CLUSTER consortium (https://www.clusterconsortium.org.uk/) performed RNA sequencing on bulk and sorted CD4, CD8, CD14 and CD19 cells from the peripheral blood of patients with juvenile idiopathic arthritis and healthy controls. These data were used to examine performance of algorithms to impute cell subset specific expression from the mixed cell population (PBMC). Information and processed read counts are provided here for reproducibility purposes. Raw data (FASTQ) and clinical characteristics will be released when the primary outcome paper from the study is published.
DOI: 10.5281/zenodo.10049901
title: Data from: Development and validation of a core genome multilocus sequence typing (cgMLST) scheme for Klebsiella oxytoca

description: The dataset hereby shared contains the genomes used to create and validate a newly proposed schema for Klebsiella oxytoca. 
As reference dataset, all publicly available K. oxytoca draft and complete genomes (199) were downloaded from RefSeq in NCBI database in September 2021. All assemblies were filtered by quality and identification methods in order to remove highly fragmented genomes (more than 200 contigs) and genomes that did not correspond to K. oxytoca sensu stricto. A series of assemblies, including complete and draft genomes, were removed because they (i) did not correspond to K. oxytoca species based on MLST or rMLST, and because they (ii) produced ANI values lower than 96% against K. oxytoca. Apart from some genomes that had no correspondence to K. oxytoca, several others were discarded because they did not correspond to K. oxytoca species sensu stricto, but other closely related species included in the K. oxytoca species complex, such as K. michiganensis or K. grimontii. Additional identification of blaOXY gene variants supported this observation. Finally, genomes that had not been assigned an assigned ST were also removed, since they would not contribute to the schema validation. Therefore, the final dataset consisted in 16 high-quality complete genomes of K. oxytoca sensu stricto.
DOI: 10.5281/zenodo.10053995
title: Observational Bias and Young Massive Cluster Characterisation II. Can Gaia accurately observe young clusters and associations?

description: Field-of-View for synthetic Gaia observations of clusters Orion-type-3, Orion-type-5.5 and Wd2-type presented in Buckner et al. (2023).
Files contain both simulation and field stars along the Line-of-Sight (l = 270^o, b = 0^o) for the clusters when placed at 500pc, 2500pc and 4300pc distances.
The original simulation files are included for reference.
Included README files provide more detailed descriptions of the files.
DOI: 10.5281/zenodo.10049900
title: Data from: Development and validation of a core genome multilocus sequence typing (cgMLST) scheme for Klebsiella oxytoca

description: The dataset hereby shared contains the genomes used to create and validate a newly proposed schema for Klebsiella oxytoca. 
As reference dataset, all publicly available K. oxytoca draft and complete genomes (199) were downloaded from RefSeq in NCBI database in September 2021. All assemblies were filtered by quality and identification methods in order to remove highly fragmented genomes (more than 200 contigs) and genomes that did not correspond to K. oxytoca sensu stricto. A series of assemblies, including complete and draft genomes, were removed because they (i) did not correspond to K. oxytoca species based on MLST or rMLST, and because they (ii) produced ANI values lower than 96% against K. oxytoca. Apart from some genomes that had no correspondence to K. oxytoca, several others were discarded because they did not correspond to K. oxytoca species sensu stricto, but other closely related species included in the K. oxytoca species complex, such as K. michiganensis or K. grimontii. Additional identification of blaOXY gene variants supported this observation. Finally, genomes that had not been assigned an assigned ST were also removed, since they would not contribute to the schema validation. Therefore, the final dataset consisted in 16 high-quality complete genomes of K. oxytoca sensu stricto.
DOI: 10.5281/zenodo.10053996
title: Observational Bias and Young Massive Cluster Characterisation II. Can Gaia accurately observe young clusters and associations?

description: Field-of-View for synthetic Gaia observations of clusters Orion-type-3, Orion-type-5.5 and Wd2-type presented in Buckner et al. (2023).
Files contain both simulation and field stars along the Line-of-Sight (l = 270^o, b = 0^o) for the clusters when placed at 500pc, 2500pc and 4300pc distances.
The original simulation files are included for reference.
Included README files provide more detailed descriptions of the files.
DOI: 10.5281/zenodo.10055012
title: Dataset related to article "Identification of a panel of miRNAs associated with resistance to palbociclib and endocrine therapy"

description: Abstract under definition
DOI: 10.5281/zenodo.10055042
title: Site-1 collection data

description: Site-1 datasets for zenodo test
DOI: 10.5281/zenodo.10055043
title: Site-1 collection data

description: Site-1 datasets for zenodo test
DOI: 10.5281/zenodo.10055011
title: Dataset related to article "Identification of a panel of miRNAs associated with resistance to palbociclib and endocrine therapy"

description: Abstract under definition
DOI: 10.5281/zenodo.8379542
title: Magnetic resonance spectroscopy data acquired in tinnitus subjects and healthy volunteers using PRESS sequence

description: This dataset contains raw free induction decay (FID) signals collected during 1H magnetic resonance spectroscopy (MRS) study in 52 individuals with tinnitus (24 with unilateral and 28 with bilateral tinnitus) and 25 healthy volunteers (described in detail in a separate article doi:10.1038/s41598-023-45024-3).
Data acquisition was performed using 3T Siemens Prisma Fit scanner with a 20-channel receiver head-coil. A single voxel spectroscopy (SVS) PRESS (Point-Resolved Spectroscopy Sequence) sequence was applied for collection of MRS data, using standard Siemens water suppression (water saturation, 50 Hz bandwidth) and no lipid suppression. MRS data was collected from four cubic 3.75 cm3 (1.5 cm x 1.5 cm x 1.5 cm) regions-of-interest in the brain, placed in the left temporal lobe, right temporal lobe, left frontal lobe, and right frontal lobe. The MRS sequence parameters were: TR (time of repetition) = 2000 ms, TE (time of echo) = 40 ms, TA (time of acquisition) = 4 min 26 s, 128 averages with 1024 time points and 1200 Hz bandwidth.
MRS data is stored in RDA file format, developed by Siemens (see doi:10.1002/nbm.4257, Table 1). Each RDA file contains a text header (which can be viewed using a standard notepad application) and binary FID signal under the header. Data can be imported for analysis using several open-source packages (tested with FID-A doi:10.1002/mrm.26091 and spant doi:10.21105/joss.03646). 
Naming scheme of files is as follows:
<participant ID>_<hemisphere: L or R>_<region: F (frontal) or T (temporal)>.rda
For example: 001_L_F.rda is data from participant 001 collected from a voxel placed in a ROI in the left frontal lobe.
In order to allow replication of the results from the original article, we also added information about the group of each of the subjects. This information is stored in a TSV file containing two columns: participant_ID and group (C – control, TU – unilateral tinnitus, TB – bilateral tinnitus).
Aside from replication of our results this dataset may be used e.g. for testing of different MRS data processing pipelines.
description: Contact details: Prof. Tomasz Wolak, head of Bioimaging Research Center of Institute of Physiology and Pathology of Hearing (t.wolak@ifps.org.pl)
DOI: 10.5281/zenodo.8379543
title: Magnetic resonance spectroscopy data acquired in tinnitus subjects and healthy volunteers using PRESS sequence

description: This dataset contains raw free induction decay (FID) signals collected during 1H magnetic resonance spectroscopy (MRS) study in 52 individuals with tinnitus (24 with unilateral and 28 with bilateral tinnitus) and 25 healthy volunteers (described in detail in a separate article doi:10.1038/s41598-023-45024-3).
Data acquisition was performed using 3T Siemens Prisma Fit scanner with a 20-channel receiver head-coil. A single voxel spectroscopy (SVS) PRESS (Point-Resolved Spectroscopy Sequence) sequence was applied for collection of MRS data, using standard Siemens water suppression (water saturation, 50 Hz bandwidth) and no lipid suppression. MRS data was collected from four cubic 3.75 cm3 (1.5 cm x 1.5 cm x 1.5 cm) regions-of-interest in the brain, placed in the left temporal lobe, right temporal lobe, left frontal lobe, and right frontal lobe. The MRS sequence parameters were: TR (time of repetition) = 2000 ms, TE (time of echo) = 40 ms, TA (time of acquisition) = 4 min 26 s, 128 averages with 1024 time points and 1200 Hz bandwidth.
MRS data is stored in RDA file format, developed by Siemens (see doi:10.1002/nbm.4257, Table 1). Each RDA file contains a text header (which can be viewed using a standard notepad application) and binary FID signal under the header. Data can be imported for analysis using several open-source packages (tested with FID-A doi:10.1002/mrm.26091 and spant doi:10.21105/joss.03646). 
Naming scheme of files is as follows:
<participant ID>_<hemisphere: L or R>_<region: F (frontal) or T (temporal)>.rda
For example: 001_L_F.rda is data from participant 001 collected from a voxel placed in a ROI in the left frontal lobe.
In order to allow replication of the results from the original article, we also added information about the group of each of the subjects. This information is stored in a TSV file containing two columns: participant_ID and group (C – control, TU – unilateral tinnitus, TB – bilateral tinnitus).
Aside from replication of our results this dataset may be used e.g. for testing of different MRS data processing pipelines.
description: Contact details: Prof. Tomasz Wolak, head of Bioimaging Research Center of Institute of Physiology and Pathology of Hearing (t.wolak@ifps.org.pl)
DOI: 10.5281/zenodo.10054946
title: Dataset of paper "Comparison of radiant intensity in aqueous media using experimental and numerical simulation techniques"

description: Dataset of paper "Comparison of radiant intensity in aqueous media using experimental and numerical simulation techniques":

Relative spectral intensity for each light source as recorded by ILT RAA4 spectroradiometer.
Material and optical properties of the quartz tube.
Wavelength specific refractive index and quantum yield in water.
Ray tracing data vs experimental data (FX-1 265).
Plot of peak intensity vs working distance (in air) and Comparison between radiometry and ray tracing in the presence of a quartz tube in front of the light source for FX-1 265.
Recorded peak intensity at multiple working distances using radiometry and ray tracing.
Comparison between average light loss at multiple distances in radiometry, ray tracing and transmission curve due to quartz material and Plot of percentage light loss for all wavelengths at multiple working distances due to quartz material.
Data on loss of intensity in comparison with the transmission curve.
Recorded peak intensity at multiple working distances between simulation tools.
Comparison between ray tracing, DOM and radiometry for FX-1 265, Uniformity plot obtained from radiometry, ray tracing interface and DOM.
Data on comparison between actinometry measurements and ray tracing.
Plot of intensity with wavelength between the two techniques.
Comparison between measured intensity in air and water medium for FX-1 265.
Plot of change in peak intensity as light propagates through the quartz tube within the UV fixture at multiple working distances for FX-1 265.
Simulated intensity in water at different points within the tube.
DOI: 10.5281/zenodo.10054947
title: Dataset of paper "Comparison of radiant intensity in aqueous media using experimental and numerical simulation techniques"

description: Dataset of paper "Comparison of radiant intensity in aqueous media using experimental and numerical simulation techniques":

Relative spectral intensity for each light source as recorded by ILT RAA4 spectroradiometer.
Material and optical properties of the quartz tube.
Wavelength specific refractive index and quantum yield in water.
Ray tracing data vs experimental data (FX-1 265).
Plot of peak intensity vs working distance (in air) and Comparison between radiometry and ray tracing in the presence of a quartz tube in front of the light source for FX-1 265.
Recorded peak intensity at multiple working distances using radiometry and ray tracing.
Comparison between average light loss at multiple distances in radiometry, ray tracing and transmission curve due to quartz material and Plot of percentage light loss for all wavelengths at multiple working distances due to quartz material.
Data on loss of intensity in comparison with the transmission curve.
Recorded peak intensity at multiple working distances between simulation tools.
Comparison between ray tracing, DOM and radiometry for FX-1 265, Uniformity plot obtained from radiometry, ray tracing interface and DOM.
Data on comparison between actinometry measurements and ray tracing.
Plot of intensity with wavelength between the two techniques.
Comparison between measured intensity in air and water medium for FX-1 265.
Plot of change in peak intensity as light propagates through the quartz tube within the UV fixture at multiple working distances for FX-1 265.
Simulated intensity in water at different points within the tube.
DOI: 10.5281/zenodo.3985917
title: GulfDrifters: A consolidated surface drifter dataset for the Gulf of Mexico

description: This dataset consists of all publicly available surface drifter trajectories from the Gulf of Mexico, subjected to a uniform quality control and processing methodology and interpolated onto hourly resolution. Full details as to the datasets and processing may be found in Lilly and Perez-Prunius (2020), "A gridded surface current product for the Gulf of Mexico from consolidated drifter measurements." A related dataset is the GulfFlow space/time gridded velocity product, comprised of these data together with three proprietary experiments. GulfFlow is available at https://zenodo.org/record/3978793 for noncommercial use. One of those proprietary experiments is the Deep Water Dispersion Experiment (DWDE). This is available for noncommercial use at https://zenodo.org/record/3979964, together with a version of the GulfDrifters dataset, GulfDriftersDWDE, that also incorporates the DWDE data.
DOI: 10.5281/zenodo.4421585
title: GulfDrifters: A consolidated surface drifter dataset for the Gulf of Mexico

description: This dataset consists of all publicly available surface drifter trajectories from the Gulf of Mexico, subjected to a uniform quality control and processing methodology and interpolated onto hourly resolution.  Full details as to the datasets and processing may be found in


Lilly, J. M. and P. Pérez-Brunius (2021).  A gridded surface current product for the Gulf of Mexico from consolidated drifter measurements. Earth System Science Data, 13: 645–669.  https://doi.org/10.5194/essd-13-645-2021.


A related dataset is the GulfFlow space/time gridded velocity product, comprised of these data together with three proprietary experiments.  GulfFlow is available at https://zenodo.org/record/3978793 for noncommercial use. 


One of those proprietary experiments is the Deep Water Dispersion Experiment (DWDE).  This is available for noncommercial use at https://zenodo.org/record/3979964, together with a version of the GulfDrifters dataset, GulfDriftersDWDE, that also incorporates the DWDE data.
DOI: 10.5281/zenodo.10054861
title: Raw data of "Proximity-Induced Superconductivity in Atomically Precise Nanographene on Ag/Nb(110)"

description: E.M., R.P., and W.W. designed the experiments. P.Z., S.-X.L., R.H., and SD synthesized the molecule. J.-C.L. performed STM/AFM experiments and analyzed the data. W.W. provided the dilution STM and H.C. assisted the measurement. X.W. and U.A. performed the DFT calculations. J.-C.L. wrote the manuscript with the help of R.P. All authors discussed the results and revised the manuscript.
DOI: 10.5281/zenodo.10047637
title: Dataset for "Indoor transmission of respiratory droplets under different ventilation systems using Eulerian approach"

description: Dataset for figures and tables of the article "Indoor transmission of respiratory droplets under different ventilation systems using Eulerian approach".
DOI: 10.5281/zenodo.10054860
title: Raw data of "Proximity-Induced Superconductivity in Atomically Precise Nanographene on Ag/Nb(110)"

description: E.M., R.P., and W.W. designed the experiments. P.Z., S.-X.L., R.H., and SD synthesized the molecule. J.-C.L. performed STM/AFM experiments and analyzed the data. W.W. provided the dilution STM and H.C. assisted the measurement. X.W. and U.A. performed the DFT calculations. J.-C.L. wrote the manuscript with the help of R.P. All authors discussed the results and revised the manuscript.
DOI: 10.57841/casdc.0001823
title: 不同厚度石墨烯表面的纳米摩擦各向异性研究
DOI: 10.5281/zenodo.8240492
title: Global Datasets of Hourly Carbon and Water Fluxes Simulated Using a Satellite-based Process Model with Dynamic Parameterizations

description: This new global hourly dataset serves as a 'handshake' among process-based models, remote sensing, and the eddy covariance flux network, providing a reliable long-term estimate of global gross primary productivity (GPP) and evapotranspiration (ET) with diurnal patterns and facilitating studies related to ecosystem functional properties, global carbon, and water cycles. The dataset include the GPP and ET of sunlit and shaded leaf components at an hourly timescale and a spatial resolution of 0.25-degree from 2001 to 2020.
DOI: 10.5281/zenodo.8240491
title: Global Datasets of Hourly Carbon and Water Fluxes Simulated Using a Satellite-based Process Model with Dynamic Parameterizations

description: This new global hourly dataset serves as a 'handshake' among process-based models, remote sensing, and the eddy covariance flux network, providing a reliable long-term estimate of global gross primary productivity (GPP) and evapotranspiration (ET) with diurnal patterns and facilitating studies related to ecosystem functional properties, global carbon, and water cycles. The dataset include the GPP and ET of sunlit and shaded leaf components at an hourly timescale and a spatial resolution of 0.25-degree from 2001 to 2020.
DOI: 10.18112/openneuro.ds004703.v1.0.0
title: PassiveListen
DOI: 10.57841/casdc.0001824
title: 基于耗散磨损模型的典型机械密封配副混合润滑磨损加速试验研究
DOI: 10.18141/1671320
title: Carbon Storage Open Database

description: The Carbon Storage Open Database is a collection of spatial data obtained from publicly available sources published by several NATCARB Partnerships and other organizations. The carbon storage open database was collected from open-source data on ArcREST servers and websites in 2018, 2019, 2021, and 2022. The original database was published on the former GeoCube, which is now EDX Spatial, in July 2020, and has since been updated with additional data resources from the Energy Data eXchange (EDX) and external public data resources. The shapefile geodatabase is available in total, and has also been split up into multiple databases based on the maps produced for EDX spatial. These are topical map categories that describe the type of data, and sometimes the region for which the data relates. The data is separated in case there is only a specific area or data type that is of interest for download. In addition to the geodatabases, this submission contains: 1. A ReadMe file describing the processing steps completed to collect and curate the data. 2. A data catalog of all feature layers within the database. Additional published resources are available that describe the work done to produce the geodatabase: Morkner, P., Bauer, J., Creason, C., Sabbatino, M., Wingo, P., Greenburg, R., Walker, S., Yeates, D., Rose, K. 2022. Distilling Data to Drive Carbon Storage Insights. Computers & Geosciences. https://doi.org/10.1016/j.cageo.2021.104945 Morkner, P., Bauer, J., Shay, J., Sabbatino, M., and Rose, K. An Updated Carbon Storage Open Database - Geospatial Data Aggregation to Support Scaling -Up Carbon Capture and Storage. United States: N. p., 2022. Web. https://www.osti.gov/biblio/1890730 Morkner, P., Rose, K., Bauer, J., Rowan, C., Barkhurst, A., Baker, D.V., Sabbatino, M., Bean, A., Creason, C.G., Wingo, P., and Greenburg, R. Tools for Data Collection, Curation, and Discovery to Support Carbon Sequestration Insights. United States: N. p., 2020. Web. https://www.osti.gov/biblio/1777195 Disclaimer: This project was funded by the United States Department of Energy, National Energy Technology Laboratory, in part, through a site support contract. Neither the United States Government nor any agency thereof, nor any of their employees, nor the support contractor, nor any of their employees, makes any warranty, express or implied, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed, or represents that its use would not infringe privately owned rights. Reference herein to any specific commercial product, process, or service by trade name, trademark, manufacturer, or otherwise does not necessarily constitute or imply its endorsement, recommendation, or favoring by the United States Government or any agency thereof. The views and opinions of authors expressed herein do not necessarily state or reflect those of the United States Government or any agency thereof.
DOI: 10.57841/casdc.0001825
title: 不同加速应力下PTFE/Kevlar编织衬垫寿命及摩擦学性能研究
DOI: 10.6084/m9.figshare.23961726
title: Data Penelitian COVID-19 bulan Juli 2020-Februari 2021.xlsx

description: This data supports study titled "The comparison of laboratory parameters of COVID-19 patients in Universitas Indonesia Hospital at before and during Delta variant period" by Yusra et al.
DOI: 10.6084/m9.figshare.23961726.v1
title: Data Penelitian COVID-19 bulan Juli 2020-Februari 2021.xlsx

description: This data supports study titled "The comparison of laboratory parameters of COVID-19 patients in Universitas Indonesia Hospital at before and during Delta variant period" by Yusra et al.
DOI: 10.5066/p9c4e2cw
title: Mangrove damage along northern Gulf of Mexico from extreme freeze event on February 2021

description: Climate change is altering the frequency and intensity of extreme weather events. Quantifying ecosystem responses to extreme events at the landscape scale is critical for understanding and responding to climate-driven change but is constrained by limited data availability. Here, we integrated remote sensing with ground-based observations to quantify landscape-scale vegetation damage from an extreme climatic event. We used ground- and satellite-based black mangrove (Avicennia germinans) leaf damage data from the northern Gulf of Mexico (USA and Mexico) to examine the effects of an extreme freeze in a region where black mangroves are expanding their range. The February 2021 event produced coastal temperatures as low as -10 ? in some areas, exceeding thresholds for A. germinans damage and mortality. We used Sentinel-2 surface reflectance data to assess vegetation greenness before and after the freeze, along with ground-based observations of A. germinans leaf damage.