cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15507325
title: Tracking Evolution of SARS-CoV-2 NSP7: Mutation Insights from 2,731 Genomes

description: This work builds upon my recent study titled "Mutation Profile Analysis of 3,252 SARS-CoV-2 Genomes from January to Early May 2025: Evidence of High Diversity and Limited Convergent Evolution in NSP7, NSP8, NSP12, and NSP14" published on Figshare (DOI: 10.6084/m9.figshare.29137385.v1 ). In that global-scale analysis of 3,252 genomes , I reported no recurrent mutations in key replicase genes including NSP7 , indicating high genomic diversity and limited convergent evolution across the early pandemic period.

In this focused follow-up investigation, I re-analyzed the same curated dataset of 2,731 high-quality sequences using refined methods and deeper inspection of individual gene regions. The updated analysis revealed four recurring amino acid substitutions in NSP7, N79K, T85I, R115G, and E133D which cluster within functionally important domains such as the RNA-binding interface and the NSP8 interaction region.

This suggests that while overall convergence remains low, certain positions in NSP7 may be under subtle selective pressure, warranting further structural and functional investigation. I encourage researchers to have critical evaluation of these findings in light of ongoing surveillance data and emphasize the importance of open science and reproducibility through shared, visualizations, and mutation matrices.

This work is intended to support open research into SARS-CoV-2 evolution, particularly in understudied non-structural proteins.
DOI: 10.15468/dl.pmrgqc
title: Occurrence Download

description: A dataset containing 6631 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Elginus unispinus Stiller, 2009, Vilargus dentulicans Stiller, 2010, Nicolaus atrogilvus Stiller, 1998, Neohesperilla senta (Miskin, 1891), Heteronympha penelope Waterhouse, 1937, Saccostomus mearnsi Heller, 1910, Scalmicauda argenteomaculata Aurivillius, 1892, Bourgognea obscurior (Bourgogne, 1962), Bocchoris plenilinealis Dyar, 1917, Moerarchis anomogramma (Meyrick, 1930), Maurilia albirivula Hampson, 1905, Casphalia flavicollis Walker, 1866, Rhypteira sordida Holland, 1893, Latoia vitilena (Karsch, 1896), Euproctis pygmaea Walker, 1855, Acrocercops brochogramma Meyrick, 1914, Phlebodicha cardinalli West, 1940, Emesis cereus (Linnaeus, 1767), Parasa media (Walker, 1855), Muxta xanthopa (Holland, 1893), Andrallochroma bicolor Strand, 1912, Narosa hedychroa Bethune-Baker, 1909, Hypopta selenophora Hering, 1923, Casphalia picta Schaus & Clements, 1893, Prochoerodes sectata Guenée, 1858, Narosa viridana Talbot, 1927, Candalides tringa (Grose-Smith, 1894), Euproctis rufiterga Hampson, 1910, Phlebodicha secunda Strand, 1912, Ormenis antoniae Melichar, 1902, Panthiades bitias (Cramer, 1779), Paragonia procidaria (Herrich-Schäffer, 1855), Hampsonodes mastoides Hampson, 1910, Physocleora pauper Warren, 1897, Paragonia tasima (Cramer, 1779), Ardops nichollsi (Thomas, 1891), Belemnia ochriplaga Hampson, 1901, Tumicla atricraspeda (Hampson, 1914), Colocleora smithi (Warren, 1904), Coeliades chalybe (Westwood), Lebeda metaspila (Walker, 1865), Lebeda intermedia Holloway, 1987, Afronarosa africana (Hering, 1932), Mambara inconspicua Bethune-Baker, 1908, Leipoxais rufobrunnea Strand, 1912, Ctenolita auribasalis (Holland, 1893), Parasa carnapi Karsch, 1899, Limacosilla pirifera Hering, 1931, Scopelodes pallivittata Snellen, 1886, Stroteroides nigrisignata Strand, 1912)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6631 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017096-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d6acxu
title: Occurrence Download

description: A dataset containing 351 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-74.12684 45.52818,-71.3894 45.52818,-71.3894 47.39813,-74.12684 47.39813,-74.12684 45.52818))",
 "HasGeospatialIssue is false",
 "TaxonKey is Lonicera L."
 ]
}

 The dataset includes 351 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017095-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nynm5m
title: Occurrence Download

description: A dataset containing 134479 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Endophragmiella hughesii D.Hawksw., Lichenoconium follmannii S.Y.Kondr. & D.J.Galloway, Phoma lobariae Diederich & Etayo, Chalara lobariae Etayo, Unguiculariopsis manriquei Etayo, Nanostictis christiansenii Etayo, Plectocarpon lichenum (Sommerf.) D.Hawksw., Psammina lobariae (Diederich & Etayo) Earl.-Benn. & D.Hawksw., Plectocarpon linitae (R.Sant.) Wedin & Hafellner, Prophysaon dubium Cockerell, 1890, Vespericola columbianus (I.Lea, 1838), Cornutispora lichenicola D.Hawksw. & B.Sutton, Tremella lobariacearum Diederich & M.S.Christ., Phyllonorycter leucographella (Zeller, 1850), Pteroptrix prolata (Prinsloo & Neser, 1990), Burksiella spirita (Girault, 1918), Meimuna mongolica (Distant, 1881), Cydia pyrivora (Danilevsky, 1947), Cacopsylla chinensis (Yang & Li, 1981), Cyanopica cyanus (Pallas, 1776), Parasa consocia Walker, 1865, Scopula quadrilineata (Packard, 1876), Acrobasis pirivorella Matsumura, 1900, Sciapteryx soror Konow, 1890, Cheilosia albitarsis Meigen, 1822, Phytomyza evanescens Hendel, 1920, Phytomyza albipennis Fallén, 1823, Phytomyza ranunculivora Hering, 1932, Leiosoma troglodytes Rye, 1873, Napomyza nigritula (Zetterstedt, 1838), Hydrothassa glabra (Herbst, 1783), Athalia bicolor Serville, 1823, Trigonophora flammea Esper, 1785, Deporaus glastinus O'Brien & Wibmer, 1982, Malachius mixtus Horn, 1872, Zodion nigrifrons Kröber, 1915, Andrena caerulea Smith, 1879, Leptotrochila ranunculi (Fr.) Schüepp, Aecidium ranunculi-insignis G.Cunn., Tetrastichus atratulus (Nees, 1834), Lycaena hermes (W.H.Edwards, 1870), Hermelycaena hermes (Edwards, 1870), Triphosa californiata (Packard, 1871), Zonotrichia leucophrys gambelii (Nuttall, 1840), Cortodera cubitalis (LeConte, 1861), Charaxes xiphares (Cramer, 1781), Gonepteryx farinosa (Zeller, 1847), Gonepteryx amintha (Blanchard, 1871), Diaporthe fibrosa (Pers.) Fuckel, Cucurbitaria rhamni (Nees) Ces. & De Not.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 134479 records from 752 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017093-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ev2v93
title: Occurrence Download

description: A dataset containing 9722 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-169.34064 89.2887,-169.34064 89.2887,-168.43508 13.82496,-28.97808 14.12681,-25.95953 66.34772,-8.45194 81.86034,-9.96121 89.10486,-169.34064 89.2887))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Calidris maritima (Brünnich, 1764)",
 "Year 2021-2022"
 ]
}

 The dataset includes 9722 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0282630-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.un5zju
title: Occurrence Download

description: A dataset containing 964 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tabernanthe iboga Baill."
 ]
}

 The dataset includes 964 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0274292-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z6ewvz
title: Occurrence Download

description: A dataset containing 2920 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Liberia",
 "OccurrenceStatus is Present",
 "TaxonKey is Oryza glaberrima Steud."
 ]
}

 The dataset includes 2920 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0271111-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2526nd
title: Occurrence Download

description: A dataset containing 292 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "Country is one of (United States of America, United States Minor Outlying Islands, American Samoa, Micronesia (Federated States of), Guam, Marshall Islands, Northern Mariana Islands, Puerto Rico, Palau, Virgin Islands (U.S.))",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Gillia altilis (I.Lea, 1841))"
 ]
}

 The dataset includes 292 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0274315-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y9jjht
title: Occurrence Download

description: A dataset containing 789 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation)",
 "Country is one of (Senegal, Cabo Verde, Mauritania, Western Sahara, Gambia, Guinea-Bissau)",
 "Geometry POLYGON((-24.41056 9.68745,-13.00633 9.68745,-13.00633 24.55191,-24.41056 24.55191,-24.41056 9.68745))",
 "HasGeospatialIssue is false",
 "Month is one of (May, June, July, August, September, October)",
 "TaxonKey is Procellariiformes"
 ]
}

 The dataset includes 789 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0282644-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sbztbc
title: Occurrence Download

description: A dataset containing 151 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Withania coagulans (Stocks) Dunal"
 ]
}

 The dataset includes 151 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0271112-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cg8mrg
title: Occurrence Download

description: A dataset containing 196 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lamourouxia sylvatica Kunth"
 ]
}

 The dataset includes 196 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003569-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.txyrtu
title: Occurrence Download

description: A dataset containing 692 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leptodermis potaninii Batalin",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 692 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003108-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m35ty7
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Occurrence evidence)",
 "Country is Greece",
 "OccurrenceStatus is Present",
 "TaxonKey is Calidris alpina alpina",
 "Year 1990-2022"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0271209-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fb9prc
title: Occurrence Download

description: A dataset containing 29824 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amaranthus blitum L."
 ]
}

 The dataset includes 29824 records from 657 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025219-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.84bvrr
title: Occurrence Download

description: A dataset containing 21052 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Setophaga chrysoparia (P.L.Sclater & Salvin, 1860)",
 "HasCoordinate is True",
 "Country is United States of America",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2025",
 "Month is greater than or equal to January",
 "Month is less than or equal to December",
 "HasGeospatialIssue is False",
 "DecimalLatitude is greater than or equal to 18.00",
 "DecimalLatitude is less than or equal to 72.00",
 "DecimalLongitude is greater than or equal to -140.00",
 "DecimalLongitude is less than or equal to -68.00"
 ]
}

 The dataset includes 21052 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0282645-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7c7jav
title: Occurrence Download

description: A dataset containing 1114 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus aromaticus (Ridl.) Mattf. & Kük."
 ]
}

 The dataset includes 1114 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002302-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5886/ekxjiu
title: Comparison of Environmental DNA and SCUBA Diving Methods to Survey Keystone Rockfish Species on the Central Coast of British Columbia, Canada

description: Within this work we address the relevance of integrating molecular techniques; particularly environmental DNA (eDNA) methods into biological monitoring programs. We focused on the Sebastes genus; a group of important fish in the Pacific Northwest of North America. They are particularly interesting from an evolutionary standpoint due to a high degree of interspecific sequence conservation paired with a high degree of intraspecific sequence variability. We used a novel whole mitochondrial genome approach to overcome these challenges and create successful targeted qPCR eDNA assays for species of particular importance. We also used a metabarcoding approach to compare molecular community diversity estimates with those made by conventional diving methods. We found that molecular techniques were highly sensitive and could detect more species overall. However, both molecular and conventional methods have their strengths. In terms of species and habitat protection, using multiple techniques together will be most impactful.
description: This data was collected in the territory of the Kitasoo/X'ais x'ais First Nation with the logistical support and permission of the Kitasoo/X'ais x'ais Stewardship Authority. If you download or use this data for any purpose please contact Christina Service the Wildlife Biologist and Science Coordinator at research@kxsa.ca.
description: [This dataset was processed using the GBIF eDNA converter tool.]
DOI: 10.15468/dl.55a878
title: Occurrence Download

description: A dataset containing 11453 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "TaxonKey is Procnias nudicollis (Vieillot, 1817)"
 ]
}

 The dataset includes 11453 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0274332-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2bj7yn
title: Occurrence Download

description: A dataset containing 205 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((30.24148 64.34687,30.366 64.30225,30.40855 64.27631,30.49364 64.26489,30.75825 64.18499,30.77797 64.3147,30.45421 64.39564,30.24148 64.34687))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 205 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0271124-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r585p2
title: Occurrence Download

description: A dataset containing 11742 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "OccurrenceStatus is Present",
 "TaxonKey is Anser serrirostris Gould, 1852",
 "Year 2000-2023"
 ]
}

 The dataset includes 11742 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0271115-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.matytm
title: Occurrence Download

description: A dataset containing 106 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Especies Vasculares Herbario Xiloteca Espoch"
 ]
}

 The dataset includes 106 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003587-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z2azs2
title: Occurrence Download

description: A dataset containing 85 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (Michigan State University Herbarium Vascular Plants, Field Museum of Natural History (Botany) Seed Plant Collection, Canadian Museum of Nature Herbarium, MPM Milwaukee Public Museum Herbarium, Royal Botanical Gardens Herbarium (HAM))",
 "TaxonKey is Iris lacustris Nutt."
 ]
}

 The dataset includes 85 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0274316-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4228/zalf-eb6s-e540
title: Reduction of the environmental and climate impact of cultivating raw material crops through the use of the beneficial effects of optimized subsoil tillage methods.

description: The adaptation of production methods for raw material crops holds a key position in reducing the climate impact of agriculture. This form of utilization is suspected of promoting the CO2 source function through the increased depletion of soil carbon stocks. There is a particular need for action regarding the reduction of negative climate and environmental impacts when applying digestate. Various factors suggest that these problems can be addressed using the well-known technique of partial subsoil tillage. Unlike traditional subsoil tillage, the risk of subsequent yield losses, subsoil compaction, and increased energy expenditures is low here. This is because, in partial subsoil tillage (pST), a controlled mixing of carbon-poor subsoil into the plow layer and the transfer of topsoil into well-rooted shafts in the subsoil are combined. In the topsoil, imbalances in the carbon and nitrogen dynamics are created, which should lead to a rapid rebuild of organic matter stocks and thus to CO2-C sequestration and nitrogen fixation. At the same time, organic carbon located in the subsoil after pST should be protected from rapid decomposition. The overall goal of the project is to determine whether pST actually has the mentioned effects and whether it can be optimized through an interdisciplinary research approach to achieve a lasting reduction in the climate and environmental impact of raw material crop production in agricultural practice.
DOI: 10.15468/dl.jf48a8
title: Occurrence Download

description: A dataset containing 9651 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "Country is one of (Spain, Portugal)",
 "DatasetKey is one of (Fishes in MZNA-VERT: freshwater communities in the Larraun river (Spain). PhD project, Javier Oscoz & Master project, A. Cos., Fishes in MZNA-VERT: freshwater populations in the Erro river (Spain). PhD Project, Pedro Leunda., Fishes in MZNA-VERT: baseline freshwater sampling campaigns, Fishes in MZNA-VERT: foraging ecology of the kingfisher. PhD project, Antonio Vilches, Données piscicoles et astacicoles des cours d'eau de France métropolitaine bancarisées dans ASPE (OFB) - Données acquises selon le protocole de pêche complète à un ou plusieurs passages - ASPE - OFB, Fishes in MZNA-VERT: cyprinid and salmonid communities in the rivers Erro and Urederra (Spain). PhD project, Cristina García-Fresca, Données piscicoles et astacicoles des cours d'eau de France métropolitaine bancarisées dans ASPE (OFB) - Données acquises selon le protocole de pêche partielle par points - ASPE - OFB, Inventario Español de Especies Terrestres (MAGRAMA), Ministerio de Medio Ambiente, y Medio Rural y Marino. Dirección General de Medio Natural y Política Forestal. Inventario Nacional de Biodiversidad 2007, Peces Continentales, Programa de seguimiento del estado de las aguas - Sistema de Información de la Naturaleza de Euskadi)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gobio lozanoi Doadrio & Madeira, 2004"
 ]
}

 The dataset includes 9651 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0271125-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aqwc3q
title: Occurrence Download

description: A dataset containing 375318 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Contopus cooperi (Nuttall, 1831)"
 ]
}

 The dataset includes 375318 records from 194 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0274311-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.65v4bx
title: Occurrence Download

description: A dataset containing 24039 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-168.13322 82.34604,-167.52951 13.82496,-36.82631 16.54165,-32.90219 63.93288,-14.22215 71.44429,-6.67578 88.95188,-168.47004 87.4426,-168.13322 82.34604))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ixobrychus exilis (Gmelin, 1789)",
 "Year 2021-2022"
 ]
}

 The dataset includes 24039 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0282653-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.