cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24851037
title: The complete mitogenome of the entomopathogenic fungus <i>Metarhizium pinghaense</i> 15R

description: In this study, the complete mitogenome of the entomopathogenic fungus <i>Metarhizium pinghaense</i> 15 R, which is highly virulent to aphids and was isolated from Korean soil, was assembled and annotated for three ATP synthase subunits (<i>atp</i>6, <i>atp</i>8, and <i>atp</i>9), three cytochrome oxidase subunits (<i>cox</i>1, <i>cox2</i>, and <i>cox</i>3), apocytochrome b (<i>cob</i>), seven subunits of NADH dehydrogenase (<i>nad</i>1<i>, nad</i>2<i>, nad</i>3<i>, nad</i>4<i>, nad</i>4L<i>, nad</i>5, and <i>nad</i>6), two ribosomal RNAs (<i>rnl</i> and <i>rns</i>), and 19 tRNA genes. Five genes were carrying a total of eight introns, and they may encode ribosomal protein S3, LAGLIDADG and GIY-YIG endonucleases. Phylogenetic analysis based on the mitochondrial nucleotide sequence confirmed that the <i>M. pinghaense</i> 15 R is a member of the Clavicipitaceae, and is closely related to the species <i>M. anisopliae, M. robertsii,</i> and <i>M. brunneum.</i> The mtDNA base sequence of the <i>M. pinghaense</i> 15 R strain reported in this study is thought to be useful for biological resource genetic data.
DOI: 10.6084/m9.figshare.24851037.v1
title: The complete mitogenome of the entomopathogenic fungus <i>Metarhizium pinghaense</i> 15R

description: In this study, the complete mitogenome of the entomopathogenic fungus <i>Metarhizium pinghaense</i> 15 R, which is highly virulent to aphids and was isolated from Korean soil, was assembled and annotated for three ATP synthase subunits (<i>atp</i>6, <i>atp</i>8, and <i>atp</i>9), three cytochrome oxidase subunits (<i>cox</i>1, <i>cox2</i>, and <i>cox</i>3), apocytochrome b (<i>cob</i>), seven subunits of NADH dehydrogenase (<i>nad</i>1<i>, nad</i>2<i>, nad</i>3<i>, nad</i>4<i>, nad</i>4L<i>, nad</i>5, and <i>nad</i>6), two ribosomal RNAs (<i>rnl</i> and <i>rns</i>), and 19 tRNA genes. Five genes were carrying a total of eight introns, and they may encode ribosomal protein S3, LAGLIDADG and GIY-YIG endonucleases. Phylogenetic analysis based on the mitochondrial nucleotide sequence confirmed that the <i>M. pinghaense</i> 15 R is a member of the Clavicipitaceae, and is closely related to the species <i>M. anisopliae, M. robertsii,</i> and <i>M. brunneum.</i> The mtDNA base sequence of the <i>M. pinghaense</i> 15 R strain reported in this study is thought to be useful for biological resource genetic data.
DOI: 10.6084/m9.figshare.24962101
title: The complete chloroplast genome sequence of <i>Amorphophallus konjac</i> (Araceae) from Yunnan, China and its phylogenetic analysis in the family Araceae

description: This work determined and analyzed the complete chloroplast genome sequence of <i>Amorphophallus konjac</i> K. Koch ex N.E.Br 1858 from Yunnan, China. The genome size was 167,470 bp, of which contains a large single-copy region (LSC 93,443 bp), a small single-copy region (SSC 21,575 bp), and a pair of inverted repeat regions (IR 26,226 bp). The chloroplast genome has 131 genes, including 86 protein-coding genes, 37 tRNAs, and eight rRNAs. A previous study reported deletion of <i>acc</i>D, <i>psb</i>E, and <i>trn</i>G-GCC genes in the <i>A. konjac</i> chloroplast genome. Our study supports the conservative structure of <i>A. konjac</i> and does not support the gene deletion mentioned above. Phylogenetic analysis indicated that <i>A. konjac</i> shares a close relationship with another <i>A. konjac</i> (collected from Guizhou) and <i>A. titanium</i> by forming a clade in the genus <i>Amorphophallus</i>. Our results provide some useful information to the evolution of the family Araceae.
DOI: 10.6084/m9.figshare.25124295
title: The complete chloroplast genome sequence of <i>Thladiantha nudiflora</i> Hemsl. ex F.B.Forbes & Hemsl. 1887 (Cucurbitaceae)

description: <i>Thladiantha nudiflora</i> Hemsl. ex F.B.Forbes & Hemsl. 1887 (Cucurbitaceae) has been widely known as a traditional medicine plant. In this study, we sequenced, assembled, and annotated the complete chloroplast genome of <i>T. nudiflora</i>. The chloroplast genome of <i>T. nudiflora</i> is 156,824 base pair (bp) in length, containing a large single-copy region of 86,566 bp and a small single-copy region of 18,070 bp, separated by a pair of inverted repeats of 26,094 bp. The chloroplast genome contains 132 genes, including 87 protein-coding, 37 transfer RNA, and eight ribosomal RNA genes. Phylogenetic analysis of the chloroplast genome revealed that species of the genus <i>Thladiantha</i> were clustered together in the phylogenetic trees. This study will not only shed light on <i>T. nudiflora</i>’s evolutionary position but also provide valuable chloroplast genomic information for future studies into the origins and diversification of the genus <i>Thladiantha</i> and the Cucurbitaceae family.
DOI: 10.6084/m9.figshare.25124295.v1
title: The complete chloroplast genome sequence of <i>Thladiantha nudiflora</i> Hemsl. ex F.B.Forbes & Hemsl. 1887 (Cucurbitaceae)

description: <i>Thladiantha nudiflora</i> Hemsl. ex F.B.Forbes & Hemsl. 1887 (Cucurbitaceae) has been widely known as a traditional medicine plant. In this study, we sequenced, assembled, and annotated the complete chloroplast genome of <i>T. nudiflora</i>. The chloroplast genome of <i>T. nudiflora</i> is 156,824 base pair (bp) in length, containing a large single-copy region of 86,566 bp and a small single-copy region of 18,070 bp, separated by a pair of inverted repeats of 26,094 bp. The chloroplast genome contains 132 genes, including 87 protein-coding, 37 transfer RNA, and eight ribosomal RNA genes. Phylogenetic analysis of the chloroplast genome revealed that species of the genus <i>Thladiantha</i> were clustered together in the phylogenetic trees. This study will not only shed light on <i>T. nudiflora</i>’s evolutionary position but also provide valuable chloroplast genomic information for future studies into the origins and diversification of the genus <i>Thladiantha</i> and the Cucurbitaceae family.
DOI: 10.6084/m9.figshare.24962101.v1
title: The complete chloroplast genome sequence of <i>Amorphophallus konjac</i> (Araceae) from Yunnan, China and its phylogenetic analysis in the family Araceae

description: This work determined and analyzed the complete chloroplast genome sequence of <i>Amorphophallus konjac</i> K. Koch ex N.E.Br 1858 from Yunnan, China. The genome size was 167,470 bp, of which contains a large single-copy region (LSC 93,443 bp), a small single-copy region (SSC 21,575 bp), and a pair of inverted repeat regions (IR 26,226 bp). The chloroplast genome has 131 genes, including 86 protein-coding genes, 37 tRNAs, and eight rRNAs. A previous study reported deletion of <i>acc</i>D, <i>psb</i>E, and <i>trn</i>G-GCC genes in the <i>A. konjac</i> chloroplast genome. Our study supports the conservative structure of <i>A. konjac</i> and does not support the gene deletion mentioned above. Phylogenetic analysis indicated that <i>A. konjac</i> shares a close relationship with another <i>A. konjac</i> (collected from Guizhou) and <i>A. titanium</i> by forming a clade in the genus <i>Amorphophallus</i>. Our results provide some useful information to the evolution of the family Araceae.
DOI: 10.6084/m9.figshare.25018620
title: Complete mitochondrial genome of an oleaginous microalga <i>Vischeria punctata</i> (Eustigmatophyceae: Chlorobotryaceae) and phylogenetic analysis

description: <i>Vischeria punctata</i>, as first described by Vischer in 1945, is a member of the family Chlorobotryaceae, within the order Eustigmatales. This species is recognized for its potential as a source of biofuels and other high-value products. In the present investigation, the whole genome of <i>V. punctata</i> was sequenced utilizing the Illumina HiSeq 4000 platform, enabling the assembly and annotation of its complete mitochondrial genome. The resulting circular genome spans 41,528 base pairs (bp) with a guanine-cytosine (GC) content of 27.3%. This genome encompasses 36 protein-coding genes, alongside 28 transfer RNA (tRNA), and three ribosomal RNA (rRNA) genes. The evolutionary trajectory of <i>V. punctata</i> was further explored by constructing a phylogenetic tree derived from the mitochondrial 33 gene dataset of 16 Ochrophyta species. Comparative analysis reveals that <i>V. punctata</i> bears closer ties to <i>Vischeria</i> sp. CAUP Q202 than to <i>Vischeria stellata</i> strain SAG 33.83, suggesting shared evolutionary pathways and phenotypic traits. This investigation constitutes the inaugural study into the mitochondrial evolution and phylogenetic patterning of the mitogenome in <i>V. punctata</i>. The outcomes from this research bolster our understanding of the genetic diversity and evolutionary processes within the class Eustigmatophyceae. In particular, the mitochondrial genome of <i>V. punctata</i> serves as a valuable resource in elucidating these aspects.
DOI: 10.6084/m9.figshare.25092423
title: The complete chloroplast genome of <i>Sinosenecio globigerus</i> (C. C. Chang) B. Nordenstam (Asteraceae)

description: The genus <i>Sinosenecio</i> B. Nordenstam is a group of perennial or sometimes annual or biennial herbs in the family Asteraceae. Here, we have successfully assembled and characterized the complete chloroplast (cp) genome of <i>S. globigerus</i>, which shows a typical quadratic structure with an overall GC content of 37.4%, comprising a pair of inverted repeat regions (IRs) of 24,848 bp, a large single-copy region (LSC) of 83,379 bp and a small single-copy region (SSC) of 18,180 bp. 133 genes were annotated, including 88 protein-coding genes, 37 tRNA genes and eight rRNA genes. Further nucleotide diversity analysis indicated that three genomic regions (<i>acc</i>D-<i>psa</i>I, <i>trn</i>K-<i>rps</i>16, and <i>ycf</i>1) exhibited sufficient variability and thus could be recommended as valuable barcodes for the delimitation and identification of <i>Sinosenecio</i> species. Phylogenetic reconstruction presented clear interspecific relationships within <i>Sinosenecio</i>, which were supported to some extent by cytology, morphology and geographic distributions. Our study will provide valuable and high-quality genetic information to further elucidate the diversified mechanisms in <i>Sinosenecio</i>.
DOI: 10.6084/m9.figshare.25092423.v1
title: The complete chloroplast genome of <i>Sinosenecio globigerus</i> (C. C. Chang) B. Nordenstam (Asteraceae)

description: The genus <i>Sinosenecio</i> B. Nordenstam is a group of perennial or sometimes annual or biennial herbs in the family Asteraceae. Here, we have successfully assembled and characterized the complete chloroplast (cp) genome of <i>S. globigerus</i>, which shows a typical quadratic structure with an overall GC content of 37.4%, comprising a pair of inverted repeat regions (IRs) of 24,848 bp, a large single-copy region (LSC) of 83,379 bp and a small single-copy region (SSC) of 18,180 bp. 133 genes were annotated, including 88 protein-coding genes, 37 tRNA genes and eight rRNA genes. Further nucleotide diversity analysis indicated that three genomic regions (<i>acc</i>D-<i>psa</i>I, <i>trn</i>K-<i>rps</i>16, and <i>ycf</i>1) exhibited sufficient variability and thus could be recommended as valuable barcodes for the delimitation and identification of <i>Sinosenecio</i> species. Phylogenetic reconstruction presented clear interspecific relationships within <i>Sinosenecio</i>, which were supported to some extent by cytology, morphology and geographic distributions. Our study will provide valuable and high-quality genetic information to further elucidate the diversified mechanisms in <i>Sinosenecio</i>.
DOI: 10.6084/m9.figshare.25108318
title: The complete chloroplast genome sequence of <i>Jacobaea cannabifolia</i>

description: <i>Jacobaea cannabifolia</i> is a widely used medicinal plant. The total length of the chloroplast genome was 151,390 bp, and it comprised a large single-copy (LSC, 83,432 bp) region, a small single-copy (SSC, 18,304 bp) region, and a pair of inverted repeats (IRs, 49,654 bp). A total of 130 coding genes were annotated, including 88 protein-coding genes, 8 rRNA genes, and 34 tRNA genes. A phylogenetic tree was showed that <i>J. cannabifolia</i> and other species of the same genus clustered together.
DOI: 10.6084/m9.figshare.24894265
title: Characteristics of the complete chloroplast genome of Saxifragaceae species <i>Bergenia purpurascens</i> (Hook. f. et Thoms.) Engl

description: <i>Bergenia purpurascens</i> (Hook. f. et Thoms.) Engl. is one species of traditional Chinese medicinal plant. This is the first publication of its complete chloroplast (cp) genome. The whole cp genome has 157,246 base pairs in length with 132 annotated genes, of which were 87 protein-coding genes, 37 <i>tRNA</i>s, and 8 <i>rRNA</i>s. According to the phylogenetic study, <i>B. purpurascens</i> and <i>Bergenia scopulosa</i> T. P. Wang. 1974 had a sister relationship. This genomic data and conclusions from <i>B. purpurascens</i> phylogenetic research will provide useful information and throw light on more in-depth investigations of the systematics and evolutionary patterns of <i>Saxifragaceae</i>.
DOI: 10.6084/m9.figshare.24977336
title: The complete chloroplast genome sequence of <i>Zygophyllum brachypterum</i> (Zygophyllaceae) reveals its distinctive characteristics and evolutionary implication

description: <i>Zygophyllum brachypterum</i> Karelin & Kirilov belongs to Zygophyllaceae and is mainly distributed in the desert regions of Central Asia, Mongolia, and Northwest China. The species is valuable in exploring the adaptations of Zygophyllaceae plants to salt stress in ecological environments. In this study, we report the complete chloroplast (cp) genome of <i>Z. brachypterum</i>. The entire cp genome was 104590 bp in length, with a large single-copy region (LSC, 79170 bp), a small single-copy region (SSC, 16778 bp), and two inverted repeats (IRa/IRb) of 4321 bp each. A total of 106 genes were detected, among which seven were located in the IRs, and 65, 30, and 4 were protein-coding, tRNA, and rRNA genes, respectively. Notably, eleven genes encoding the subunits of NAD(P)H dehydrogenase complex (NDH) were absent. Phylogenetic analysis indicated that <i>Z. brachypterum</i> belonged to Zygophylloideae (Zygophyllaceae). Furthermore, it was closely related to <i>Z. fabago and Z. kansuense.</i>
DOI: 10.6084/m9.figshare.24977336.v1
title: The complete chloroplast genome sequence of <i>Zygophyllum brachypterum</i> (Zygophyllaceae) reveals its distinctive characteristics and evolutionary implication

description: <i>Zygophyllum brachypterum</i> Karelin & Kirilov belongs to Zygophyllaceae and is mainly distributed in the desert regions of Central Asia, Mongolia, and Northwest China. The species is valuable in exploring the adaptations of Zygophyllaceae plants to salt stress in ecological environments. In this study, we report the complete chloroplast (cp) genome of <i>Z. brachypterum</i>. The entire cp genome was 104590 bp in length, with a large single-copy region (LSC, 79170 bp), a small single-copy region (SSC, 16778 bp), and two inverted repeats (IRa/IRb) of 4321 bp each. A total of 106 genes were detected, among which seven were located in the IRs, and 65, 30, and 4 were protein-coding, tRNA, and rRNA genes, respectively. Notably, eleven genes encoding the subunits of NAD(P)H dehydrogenase complex (NDH) were absent. Phylogenetic analysis indicated that <i>Z. brachypterum</i> belonged to Zygophylloideae (Zygophyllaceae). Furthermore, it was closely related to <i>Z. fabago and Z. kansuense.</i>
DOI: 10.6084/m9.figshare.25018620.v1
title: Complete mitochondrial genome of an oleaginous microalga <i>Vischeria punctata</i> (Eustigmatophyceae: Chlorobotryaceae) and phylogenetic analysis

description: <i>Vischeria punctata</i>, as first described by Vischer in 1945, is a member of the family Chlorobotryaceae, within the order Eustigmatales. This species is recognized for its potential as a source of biofuels and other high-value products. In the present investigation, the whole genome of <i>V. punctata</i> was sequenced utilizing the Illumina HiSeq 4000 platform, enabling the assembly and annotation of its complete mitochondrial genome. The resulting circular genome spans 41,528 base pairs (bp) with a guanine-cytosine (GC) content of 27.3%. This genome encompasses 36 protein-coding genes, alongside 28 transfer RNA (tRNA), and three ribosomal RNA (rRNA) genes. The evolutionary trajectory of <i>V. punctata</i> was further explored by constructing a phylogenetic tree derived from the mitochondrial 33 gene dataset of 16 Ochrophyta species. Comparative analysis reveals that <i>V. punctata</i> bears closer ties to <i>Vischeria</i> sp. CAUP Q202 than to <i>Vischeria stellata</i> strain SAG 33.83, suggesting shared evolutionary pathways and phenotypic traits. This investigation constitutes the inaugural study into the mitochondrial evolution and phylogenetic patterning of the mitogenome in <i>V. punctata</i>. The outcomes from this research bolster our understanding of the genetic diversity and evolutionary processes within the class Eustigmatophyceae. In particular, the mitochondrial genome of <i>V. punctata</i> serves as a valuable resource in elucidating these aspects.
DOI: 10.6084/m9.figshare.25092420
title: The complete chloroplast genome sequence of <i>Pinus bhutanica</i> (Pinaceae) and its phylogenetic implications

description: <i>Pinus bhutanica</i> is a critically endangered conifer and occurs only in central Bhutan, northwestern Yunnan and southeastern Xizang in China. In this study, the complete chloroplast genome of <i>Pinus bhutanica</i> was first assembled based on next-generation sequencing. The genome sequence was 116,919 bp in length with an overall GC content of 38.75%. A total of 106 functional genes were detected in the genome, including 72 protein-coding genes (PCGs), 30 transfer RNA (tRNA) genes, and four ribosomal RNA (rRNA) genes. The phylogenetic tree reconstructed by 12 chloroplast genomes revealed that <i>P. bhutanica</i> is most closely related to <i>Pinus wangii</i> in subsection <i>Strobus</i> of <i>Pinus</i>.
DOI: 10.6084/m9.figshare.25108318.v1
title: The complete chloroplast genome sequence of <i>Jacobaea cannabifolia</i>

description: <i>Jacobaea cannabifolia</i> is a widely used medicinal plant. The total length of the chloroplast genome was 151,390 bp, and it comprised a large single-copy (LSC, 83,432 bp) region, a small single-copy (SSC, 18,304 bp) region, and a pair of inverted repeats (IRs, 49,654 bp). A total of 130 coding genes were annotated, including 88 protein-coding genes, 8 rRNA genes, and 34 tRNA genes. A phylogenetic tree was showed that <i>J. cannabifolia</i> and other species of the same genus clustered together.
DOI: 10.6084/m9.figshare.24935806
title: The complete plastid genome of <i>Rhamnus leptacantha</i> Schneid. (Rhamnaceae)

description: <i>Rhamnus leptacantha</i> C.K.Schneid. (1914). is a rare shrub species of the genus <i>Rhamnus</i>. The complete plastid genome of <i>Rhamnus leptacantha</i> was sequenced for the first time in this study. The total length of this genome is 161,248 bp with a large single copy (LSC) region (89,386 bp), a small single copy (SSC) region (19,000 bp), and two inverted repeat regions (IRs, 26,431 bp). A total of 133 functional genes were annotated, including 88 protein-coding genes, 37 tRNA genes and 8 rRNA genes. Plastome of <i>R. leptacantha</i> displayed a conservative structure and gene order. Phylogenetic analysis strongly supported <i>R. leptacantha</i> clustered with other members of genus <i>Rhamnus</i>. This study provides a foundation for further investigation of the complete chloroplast genome in inferring the evolution within the Rhamnaceae family.
DOI: 10.6084/m9.figshare.24935806.v1
title: The complete plastid genome of <i>Rhamnus leptacantha</i> Schneid. (Rhamnaceae)

description: <i>Rhamnus leptacantha</i> C.K.Schneid. (1914). is a rare shrub species of the genus <i>Rhamnus</i>. The complete plastid genome of <i>Rhamnus leptacantha</i> was sequenced for the first time in this study. The total length of this genome is 161,248 bp with a large single copy (LSC) region (89,386 bp), a small single copy (SSC) region (19,000 bp), and two inverted repeat regions (IRs, 26,431 bp). A total of 133 functional genes were annotated, including 88 protein-coding genes, 37 tRNA genes and 8 rRNA genes. Plastome of <i>R. leptacantha</i> displayed a conservative structure and gene order. Phylogenetic analysis strongly supported <i>R. leptacantha</i> clustered with other members of genus <i>Rhamnus</i>. This study provides a foundation for further investigation of the complete chloroplast genome in inferring the evolution within the Rhamnaceae family.
DOI: 10.6084/m9.figshare.25038615
title: The complete chloroplast genome and phylogenetic analysis of <i>Cyperus malaccensis</i> Lam (Cyperaceae)

description: <i>Cyperus malaccensis</i> Lam is a perennial herbaceous plant that is distributed over a large area along the southern coast of China. Some plants of the Cyperaceae family are highly similar morphologically, which makes them difficult to classify and identify. In this study, the complete chloroplast genome of <i>C. malaccensis</i> was sequenced and assembled. The chloroplast genome is 186,098 bp long with a 33.18% content of GC. The structure of chloroplast genome includes a quadripartite structure that is composed of a pair of inverted repeats (IRs) of 37,434 bp, a small single copy (SSC) region of 10,296 bp, and a large single copy (LSC) region of 100,934 bp. The genome contains 141 genes, including 94 protein-coding genes, 39 tRNA genes, and 8 rRNA genes. A phylogenetic analysis showed that <i>C. malaccensis</i> is the most closely related to the congeneric species <i>C. rotundus</i>. These results enrich the genetic resources of the Cyperaceae and provide a molecular basis for further study on the phylogeny of this family.
DOI: 10.6084/m9.figshare.25038615.v1
title: The complete chloroplast genome and phylogenetic analysis of <i>Cyperus malaccensis</i> Lam (Cyperaceae)

description: <i>Cyperus malaccensis</i> Lam is a perennial herbaceous plant that is distributed over a large area along the southern coast of China. Some plants of the Cyperaceae family are highly similar morphologically, which makes them difficult to classify and identify. In this study, the complete chloroplast genome of <i>C. malaccensis</i> was sequenced and assembled. The chloroplast genome is 186,098 bp long with a 33.18% content of GC. The structure of chloroplast genome includes a quadripartite structure that is composed of a pair of inverted repeats (IRs) of 37,434 bp, a small single copy (SSC) region of 10,296 bp, and a large single copy (LSC) region of 100,934 bp. The genome contains 141 genes, including 94 protein-coding genes, 39 tRNA genes, and 8 rRNA genes. A phylogenetic analysis showed that <i>C. malaccensis</i> is the most closely related to the congeneric species <i>C. rotundus</i>. These results enrich the genetic resources of the Cyperaceae and provide a molecular basis for further study on the phylogeny of this family.
DOI: 10.6084/m9.figshare.24894265.v1
title: Characteristics of the complete chloroplast genome of Saxifragaceae species <i>Bergenia purpurascens</i> (Hook. f. et Thoms.) Engl

description: <i>Bergenia purpurascens</i> (Hook. f. et Thoms.) Engl. is one species of traditional Chinese medicinal plant. This is the first publication of its complete chloroplast (cp) genome. The whole cp genome has 157,246 base pairs in length with 132 annotated genes, of which were 87 protein-coding genes, 37 <i>tRNA</i>s, and 8 <i>rRNA</i>s. According to the phylogenetic study, <i>B. purpurascens</i> and <i>Bergenia scopulosa</i> T. P. Wang. 1974 had a sister relationship. This genomic data and conclusions from <i>B. purpurascens</i> phylogenetic research will provide useful information and throw light on more in-depth investigations of the systematics and evolutionary patterns of <i>Saxifragaceae</i>.