cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3641738_d2
title: Additional file 1: of Differential expression analysis of human endogenous retroviruses based on ENCODE RNA-seq data

description: Read statistics per sample. For all analyzed ENCODE samples the number of fragments/reads which are used as input for featureCount are listed as well as the fraction of reads mapping to HERVd annotated loci. (CSV 1 kb)
DOI: 10.6084/m9.figshare.c.3641738_d3
title: Additional file 3: of Differential expression analysis of human endogenous retroviruses based on ENCODE RNA-seq data

description: Read counts of housekeeping genes. Tabular file containing the featureCount counts for all genes classified as housekeeping by Eisenberg and Levanon [39]. (CSV 1000 kb)
DOI: 10.6084/m9.figshare.c.3641738_d1
title: Additional file 2: of Differential expression analysis of human endogenous retroviruses based on ENCODE RNA-seq data

description: HERVd annotation of HERV loci in hg19. Tabular file contains columns for unique identifier, chromosome, start and stop position, strand and HERV family, respectively. The remaining columns represent the read counts from featureCount for all of the analyzed ENCODE samples. (CSV 14292 kb)
DOI: 10.6084/m9.figshare.c.3641645_d3
title: Additional file 2: of CpG site methylation in CRYAA promoter affect transcription factor Sp1 binding in human lens epithelial cells

description: Row data of qRT-PCR for CRYAA after Zebularine treatment, Experiment 1, Part 2. It is the rata data of part 2 of the first experiment described above. (XLS 2440Â kb)
DOI: 10.6084/m9.figshare.c.3641645_d4
title: Additional file 1: of CpG site methylation in CRYAA promoter affect transcription factor Sp1 binding in human lens epithelial cells

description: Row data of qRT-PCR for CRYAA after Zebularine treatment, Experiment 1, Part 1. CRYAA mRNA expression were detected using a SYBR Green detection kit. Î˛-actin was used as an internal control. qRT-PCR reactions were performed with a ViiA 7 Real-Time PCR System. All qRT-PCR experiments were performed for three times, with biological triplicates in each experiment. It is the rata data of part 1 of the first experiment. (XLS 2430Â kb)
DOI: 10.6084/m9.figshare.c.3641645_d2
title: Additional file 3: of CpG site methylation in CRYAA promoter affect transcription factor Sp1 binding in human lens epithelial cells

description: Row data of qRT-PCR for CRYAA after Zebularine treatment, Experiment 2. It is the rata data of the second experiment described above. (XLS 2431Â kb)
DOI: 10.6084/m9.figshare.c.3641645_d1
title: Additional file 4: of CpG site methylation in CRYAA promoter affect transcription factor Sp1 binding in human lens epithelial cells

description: Row data of qRT-PCR for CRYAA after Zebularine treatment, Experiment 3. It is the rata data of the third experiment described above. (XLS 2630Â kb)
DOI: 10.6084/m9.figshare.c.3641633_d6
title: Additional file 5: of MicroRNA-mRNA regulatory networking fine-tunes the porcine muscle fiber type, muscular mitochondrial respiratory and metabolic enzyme activities

description: Individual miRNAs and their correlated phenotypes for Duroc and PiNN. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.c.3641633_d7
title: Additional file 4: of MicroRNA-mRNA regulatory networking fine-tunes the porcine muscle fiber type, muscular mitochondrial respiratory and metabolic enzyme activities

description: Different expressed miRNA-mRNA pairs between Duroc and PiNN after target prediction. (XLSX 130Â kb)
DOI: 10.6084/m9.figshare.c.3641633_d5
title: Additional file 3: of MicroRNA-mRNA regulatory networking fine-tunes the porcine muscle fiber type, muscular mitochondrial respiratory and metabolic enzyme activities

description: Differentially expressed miRNAs in porcine LD muscle between Duroc and Pietrain breed types at adult stage. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3641633_d4
title: Additional file 7: of MicroRNA-mRNA regulatory networking fine-tunes the porcine muscle fiber type, muscular mitochondrial respiratory and metabolic enzyme activities

description: Phenotype correlated miRNA-mRNA pairs after target prediction for Duroc and PiNN. (XLSX 48Â kb)
DOI: 10.6084/m9.figshare.c.3641633_d2
title: Additional file 1: of MicroRNA-mRNA regulatory networking fine-tunes the porcine muscle fiber type, muscular mitochondrial respiratory and metabolic enzyme activities

description: Definition and measurement of phenotypical traits. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3641633_d3
title: Additional file 2: of MicroRNA-mRNA regulatory networking fine-tunes the porcine muscle fiber type, muscular mitochondrial respiratory and metabolic enzyme activities

description: The primer sequences in qRT-PCR. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3641633_d1
title: Additional file 6: of MicroRNA-mRNA regulatory networking fine-tunes the porcine muscle fiber type, muscular mitochondrial respiratory and metabolic enzyme activities

description: Individual mRNAs and their correlated phenotypes for Duroc and PiNN. (XLSX 18Â kb)
DOI: 10.15468/w6v87y
title: EMBRAPA FLORESTAS | Soil macrofauna communities in native Atlantic Forest fragments and Pinus plantations at the Embrapa Forestry research station in Colombo, Paraná, Brazil

description: Soil macrofauna communities were evaluated in four native Atlantic Forest (Araucaria forests) fragments and three Pinus eliottii plantations at the Embrapa Forestry research station in Colombo municipality, Paraná, Brazil. Three forest fragments in advanced state of regeneration (&gt;70 years without disturbance) and three pine plantations (25 to 32 years old) were sampled in May 2007, and another forest fragment was sampled in September 2011, following the standard methodology of the Tropical Soil Biology and Fertility Programme (TSBF). Soil and litter fauna were hand-sorted from monoliths of 25x25 cm (to 10 cm depth in 2007 and 20 cm depth in 2011), and the abundance of a total of 42 taxa assessed.
DOI: 10.15468/dl.rqtsc5
title: Occurrence Download

description: A dataset containing 121 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pandalus hypsinotus Brandt, 1851",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 121 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032106-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3641597_d2
title: MOESM9 of Identification of selective sweeps reveals divergent selection between Chinese Holstein and Simmental cattle populations

description: Additional file 9: Table S3. Candidate genes used for functional annotation.
DOI: 10.6084/m9.figshare.c.3641576_d3
title: MOESM3 of Network pharmacological identification of active compounds and potential actions of Erxian decoction in alleviating menopause-related symptoms

description: Additional file 3. Information on chemical-gene interaction pertaining to 210 compounds from EXD.
DOI: 10.6084/m9.figshare.c.3641576_d2
title: MOESM1 of Network pharmacological identification of active compounds and potential actions of Erxian decoction in alleviating menopause-related symptoms

description: Additional file 1. Information on 721 identified compounds in EXD.
DOI: 10.6084/m9.figshare.c.3641576_d1
title: MOESM2 of Network pharmacological identification of active compounds and potential actions of Erxian decoction in alleviating menopause-related symptoms

description: Additional file 2. Information on chemical-protein interaction pertaining to 155 compounds from EXD.
DOI: 10.6084/m9.figshare.c.3641555_d8
title: Additional file 4: of Deep sequencing analysis of transcriptomes in Aspergillus flavus in response to resveratrol

description: Expression of novel genes. RPKM: reads per kilobase per million reads; q value: corrected p value; log2(fold_change)â  =â  log2(AM-Res/AM). (XLSX 197 kb)
DOI: 10.6084/m9.figshare.c.3641555_d6
title: Additional file 3: of Deep sequencing analysis of transcriptomes in Aspergillus flavus in response to resveratrol

description: Gene expression of the A. flavus genome. RPKM: reads per kilobase per million reads; q value: corrected p value; log2(fold_change)â  =â  log2(AM-Res/AM). (XLSX 1280 kb)
DOI: 10.6084/m9.figshare.c.3641555_d5
title: Additional file 5: of Deep sequencing analysis of transcriptomes in Aspergillus flavus in response to resveratrol

description: Differentially expressed genes of A. flavus in response to resveratrol. log2(fold_change)â  =â  log2(AM-Res/AM); q value: corrected p value. (XLS 118 kb)
DOI: 10.6084/m9.figshare.c.3641555_d2
title: Additional file 7: of Deep sequencing analysis of transcriptomes in Aspergillus flavus in response to resveratrol

description: Gene expression and differentially expressed genes in secondary metabolism gene clusters of A. flavus. RPKM: reads per kilobase per million reads; q value: corrected p value; log2(fold_change)â  =â  log2(AM-Res/AM). (XLS 175 kb)
DOI: 10.6084/m9.figshare.c.3641423_d2
title: Additional file 1: of Prognostic value of phosphorylated Raf kinase inhibitory protein at serine 153 and its predictive effect on the clinical response to radiotherapy in nasopharyngeal carcinoma

description: Original data from 733 of the enrolled patients. (RAR 11 kb)
DOI: 10.6084/m9.figshare.c.3641423_d1
title: Additional file 2: of Prognostic value of phosphorylated Raf kinase inhibitory protein at serine 153 and its predictive effect on the clinical response to radiotherapy in nasopharyngeal carcinoma

description: All sources of funding for the research reported. (RAR 31261 kb)
DOI: 10.15468/6r73ze
title: EMBRAPA FLORESTAS | Soil macrofauna communities in native Atlantic Forest fragments in Sertanópolis, Paraná, Brazil

description: Soil macrofauna communities were evaluated in two native Atlantic Forest fragments in private properties in the municipality of Sertanópolis, in northern Paraná state, Brazil, in October 2001, and in April of 2003. Sampling following the standard methodology of the Tropical Soil Biology and Fertility Programme (TSBF), where soil (down to 40 cm depth) and litter fauna were hand-sorted from monoliths of 25x25 cm, and the abundance of a total of 42 taxa was assessed.
DOI: 10.6084/m9.figshare.c.3641087_d2
title: MOESM3 of Genome-wide association studies for feed intake and efficiency in two laying periods of chickens

description: Additional file 3: Table S2. Detailed information on SNPs associated with feed intake and efficiency that were detected by the univariate and bivariate GWAS analyses. Table S3. Detailed information on SNPs associated with feed intake and efficiency that were detected by conditional GWAS analysis. Table S4. SNPs associated with residual feed intake in the two laying periods (P value
DOI: 10.6084/m9.figshare.c.3641033_d1
title: Additional file 1: Table S1. of ClinLabGeneticist: a tool for clinical management of genetic variants from whole exome sequencing in clinical genetic laboratories

description: A sample variant input file for ClinLabGeneticist. Table S2. Variant annotation databases and features. Table S3. Summary statistic of variant review process for the three case studies. Table S4. Variant list for case 1. Table S5. Variant list for case 2. Table S6. Variant list for case 3. (XLSX 42 kb)
DOI: 10.17632/nhzwdzxn9p.1
title: Risk of Candida and Overall Fungal Infections with IL-17 Inhibitors in the Treatment of Hidradenitis Suppurativa: A Systematic Review and Meta-Analysis

description: Supplemental Files for the article titled "Risk of Candida and Overall Fungal Infections with IL-17 Inhibitors in the Treatment of Hidradenitis Suppurativa: A Systematic Review and Meta-Analysis" accepted by the Journal of the American Academy of Dermatology on November 22, 2024. Includes a summary of included studies, quality appraisal, search strategy, and supplemental references.
DOI: 10.15468/dl.7jwv8h
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is DEU.9.15_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Rhodeus amarus (Bloch, 1782)"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032107-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3640931_d1
title: Additional file 1: of Visualizing tumor evolution with the fishplot package for R

description: FigureÂ 1 example: The code and data used to produce Fig.Â 1. (R 2Â kb)
DOI: 10.6084/m9.figshare.c.3640931_d2
title: Additional file 2: of Visualizing tumor evolution with the fishplot package for R

description: Analysis Pipeline example: an example that uses the sciClone, clonevol, and fishplot packages to take data from raw somatic variant calls through subclonal detection, phylogeny inference, and fishplot creation. (ZIP 29Â kb)
DOI: 10.6084/m9.figshare.c.3640871_d1
title: Additional file 1: of FGFR3 gene mutation plus GRB10 gene duplication in a patient with achondroplasia plus growth delay with prenatal onset

description: Supplemental Tables S1, S2 and S3. (XLSX 16Â kb)
DOI: 10.5281/zenodo.10927050
title: BlueRecording

description: Input data required for the some of the examples in the Github repo BlueBrain/BlueRecording and referenced in the paper "BlueRecording: A Pipeline for the efficient calculation of extracellular recordings in large-scale neural circuit models"

The file ratHead_shift.smash is a finite element model of the rat head used in this paper. It is a Sim4Life project file. 

In order to run the example compare-to-reference-solutions (referenced in Figure 2 of the paper), first clone the github repository, then download the files Infinite_VeryFar_HighRes.h5 and Infinite_Close_HighRes_SmallSphere.h5 into the folders examples/compare-to-reference-solutions/distant-electrodes/electrodeFile and examples/compare-to-reference-solutions/close-electrodes/electrodeFile, respectively. Then follow the instructions in the Github repo. These files are finite element results containing a lead field for electrodes in an effectively infinite, homogeneous medium.

In order to run the examples circuitTest and makeCsvFiles:



Download the file networks.zip and unzip it into the folder examples/circuitTest/data/simulation/configuration/networks. This folder contains SONATA network configuration files for a small test circuit. The small circuit is a subset of the Blue Brain Project's model of the rat somatosensory cortex (SSCx).

Download the file atlas.zip and unzip it into the folder examples/data/atlas. This folder contains atlas data for the SSCx model.


In order to run the example SSCx (Figures 3-5 of the paper), download the files EEG.h5, ECoG.h5 and LFP.h5, and save them to the folder examples/SSCx/electrodeFile. You must also download the atlas information as described in the previous paragraph. Download the somatosensory cortex model and save it to the folder examples/SSCx/data/simulation/configuration according to the instructions provided in the download link. Be sure to use the .asc morphologies. The same data is used to run the example whiskerFlick (Figure 6 of the paper).
DOI: 10.5281/zenodo.14419388
title: BlueRecording

description: Input data required for the some of the examples in the Github repo BlueBrain/BlueRecording and referenced in the paper "BlueRecording: A Pipeline for the efficient calculation of extracellular recordings in large-scale neural circuit models"

The file ratHead_shift.smash is a finite element model of the rat head used in this paper. It is a Sim4Life project file. 

In order to run the example compare-to-reference-solutions (referenced in Figure 2 of the paper), first clone the github repository, then download the files Infinite_VeryFar_HighRes.h5 and Infinite_Close_HighRes_SmallSphere.h5 into the folders examples/compare-to-reference-solutions/distant-electrodes/electrodeFile and examples/compare-to-reference-solutions/close-electrodes/electrodeFile, respectively. Then follow the instructions in the Github repo. These files are finite element results containing a lead field for electrodes in an effectively infinite, homogeneous medium.

In order to run the examples circuitTest and makeCsvFiles:



Download the file networks.zip and unzip it into the folder examples/circuitTest/data/simulation/configuration/networks. This folder contains SONATA network configuration files for a small test circuit. The small circuit is a subset of the Blue Brain Project's model of the rat somatosensory cortex (SSCx).

Download the file atlas.zip and unzip it into the folder examples/data/atlas. This folder contains atlas data for the SSCx model.


In order to run the example SSCx (Figures 3-5 of the paper), download the files EEG.h5, ECoG.h5 and LFP.h5, and save them to the folder examples/SSCx/electrodeFile. You must also download the atlas information as described in the previous paragraph. Download the somatosensory cortex model and save it to the folder examples/SSCx/data/simulation/configuration according to the instructions provided in the download link. Be sure to use the .asc morphologies. The same data is used to run the example whiskerFlick (Figure 6 of the paper).
DOI: 10.5281/zenodo.10927049
title: BlueRecording

description: Input data required for the some of the examples in the Github repo BlueBrain/BlueRecording and referenced in the paper "BlueRecording: A Pipeline for the efficient calculation of extracellular recordings in large-scale neural circuit models"

The file ratHead_shift.smash is a finite element model of the rat head used in this paper. It is a Sim4Life project file. 

In order to run the example compare-to-reference-solutions (referenced in Figure 2 of the paper), first clone the github repository, then download the files Infinite_VeryFar_HighRes.h5 and Infinite_Close_HighRes_SmallSphere.h5 into the folders examples/compare-to-reference-solutions/distant-electrodes/electrodeFile and examples/compare-to-reference-solutions/close-electrodes/electrodeFile, respectively. Then follow the instructions in the Github repo. These files are finite element results containing a lead field for electrodes in an effectively infinite, homogeneous medium.

In order to run the examples circuitTest and makeCsvFiles:



Download the file networks.zip and unzip it into the folder examples/circuitTest/data/simulation/configuration/networks. This folder contains SONATA network configuration files for a small test circuit. The small circuit is a subset of the Blue Brain Project's model of the rat somatosensory cortex (SSCx).

Download the file atlas.zip and unzip it into the folder examples/data/atlas. This folder contains atlas data for the SSCx model.


In order to run the example SSCx (Figures 3-5 of the paper), download the files EEG.h5, ECoG.h5 and LFP.h5, and save them to the folder examples/SSCx/electrodeFile. You must also download the atlas information as described in the previous paragraph. Download the somatosensory cortex model and save it to the folder examples/SSCx/data/simulation/configuration according to the instructions provided in the download link. Be sure to use the .asc morphologies. The same data is used to run the example whiskerFlick (Figure 6 of the paper).
DOI: 10.5281/zenodo.14419100
title: BlueRecording

description: Input data required for the some of the examples in the Github repo BlueBrain/BlueRecording and referenced in the paper "BlueRecording: A Pipeline for the efficient calculation of extracellular recordings in large-scale neural circuit models"

The file ratHead_shift.smash is a finite element model of the rat head used in this paper. It is a Sim4Life project file. 

In order to run the example compare-to-reference-solutions (referenced in Figure 2 of the paper), first clone the github repository, then download the files Infinite_VeryFar_HighRes.h5 and Infinite_Close_HighRes_SmallSphere.h5 into the folders examples/compare-to-reference-solutions/distant-electrodes/electrodeFile and examples/compare-to-reference-solutions/close-electrodes/electrodeFile, respectively. Then follow the instructions in the Github repo. These files are finite element results containing a lead field for electrodes in an effectively infinite, homogeneous medium.

In order to run the examples circuitTest and makeCsvFiles:



Download the file networks.zip and unzip it into the folder examples/circuitTest/data/simulation/configuration/networks. This folder contains SONATA network configuration files for a small test circuit. The small circuit is a subset of the Blue Brain Project's model of the rat somatosensory cortex (SSCx).

Download the file atlas.zip and unzip it into the folder examples/data/atlas. This folder contains atlas data for the SSCx model.


In order to run the example SSCx (Figures 3-5 of the paper), download the files EEG.h5, ECoG.h5 and LFP.h5, and save them to the folder examples/SSCx/electrodeFile. You must also download the atlas information as described in the previous paragraph. Download the somatosensory cortex model and save it to the folder examples/SSCx/data/simulation/configuration according to the instructions provided in the download link. Be sure to use the .asc morphologies. The same data is used to run the example whiskerFlick (Figure 6 of the paper).
DOI: 10.5281/zenodo.14419501
title: THE IMPACT OF ENVIRONMENTAL ENRICHMENT OF LIVING CONDITIONS AND NUTRITION ON THE MAIN PHYSIOLOGICAL INDICATORS AND PRODUCTIVITY OF EGG-LAYING CHICKEN BREEDS
DOI: 10.5281/zenodo.14419502
title: THE IMPACT OF ENVIRONMENTAL ENRICHMENT OF LIVING CONDITIONS AND NUTRITION ON THE MAIN PHYSIOLOGICAL INDICATORS AND PRODUCTIVITY OF EGG-LAYING CHICKEN BREEDS
DOI: 10.5281/zenodo.14413812
title: Edit History Dataset for Russian and Ukrainian Wikipedias

description: DescriptionThis dataset accompanies ongoing research aimed at exploring the impact of Russia's invasion of Ukraine on Wikipedia's editorial activity. It includes a comprehensive collection of edits made in the Russian and Ukrainian Wikipedias during the years 2022 and 2023. Unlike other datasets with specific filtering, this collection encompasses all recorded edits, capturing a complete and unbiased snapshot of editorial activity during this pivotal period.

The dataset's primary purpose is to facilitate research into how geopolitical events influence collaborative knowledge production. By analyzing these edits, researchers can examine shifts in editorial patterns, content focus, and user contributions during a time of significant social and political upheaval.

Dataset Details:



Number of Languages: 2 (Russian, Ukrainian)

Observation Period: January 1, 2022 – December 31, 2023

Use Case: Intended for studying editorial dynamics, geopolitical influence on online collaboration, and Wikipedia activity during the Russia-Ukraine war.

Features: Each record includes metadata such as revision IDs, timestamps, user details, and textual content added, removed, or altered.

Data Filtering: No Bots edits are available in the dataset.


Researchers and practitioners can utilize this dataset to investigate the interplay between global events and online content creation, contributing to a broader understanding of how Wikipedia responds to real-world crises.