cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5gn8f
title: MassIVE MSV000087840 - Mammalian hybrid pre-autophagosomal structure HyPAS generates autophagosomes
title: The biogenesis of mammalian autophagosomes remains to be fully defined. Here we used cellular and in vitro membrane fusion analyses to show that autophagosomes are formed from a hitherto unappreciated hybrid membrane compartment. The autophagic precursors emerge through fusion of FIP200 vesicles, derived from the cis-Golgi, with endosomally-derived ATG16L1 membranes to generate a hybrid pre-autophagosomal structure, HyPAS. HyPAS biogenesis depends on a previously unrecognized machinery centered upon STX17 interactors, the calcium pump SERCA2, extended synaptotagmin E-SYT2, and SIGMAR1. This apparatus controls HyPAS biogenesis and defines the mammalian autophagosomal precursor membranes. HyPAS can be modulated by pharmacological agents whereas its formation is inhibited upon SARS-CoV-2 infection or by expression of SARS-CoV-2 nsp6. These findings reveal the origin of mammalian autophagosomal membranes that emerge via convergence of secretory and endosomal pathways, and that this process is targeted by microbial factors such as coronaviral membrane modulating proteins.
DOI: 10.6084/m9.figshare.14998332
title: Spatially and optically tailored 3D printing for highly miniaturized and integrated microfluidics

description: Data is formatted as per Nature Communications requirements, i.e., a single Microsoft Excel file with data for each figure in individual sheets.
DOI: 10.6084/m9.figshare.14998332.v1
title: Spatially and optically tailored 3D printing for highly miniaturized and integrated microfluidics

description: Data is formatted as per Nature Communications requirements, i.e., a single Microsoft Excel file with data for each figure in individual sheets.
DOI: 10.5281/zenodo.5110986
title: MaintainoMATE: Issue Assignment Dataset

description: Contains issues from the used for training classification models of MaintainoMATE
DOI: 10.5281/zenodo.5110985
title: MaintainoMATE: Issue Assignment Dataset

description: Contains issues from the used for training classification models of MaintainoMATE
DOI: 10.6084/m9.figshare.14998335
title: Untitled Item

description: Figure 2 data is a compilation chromatogram obtained during the study. Figure 3 data is a dataset used to form and analysed for Figure 3
DOI: 10.6084/m9.figshare.14998335.v1
title: Untitled Item

description: Figure 2 data is a compilation chromatogram obtained during the study. Figure 3 data is a dataset used to form and analysed for Figure 3
DOI: 10.17632/zhmwhjjs63.8
title: Carbon isotopic fractionation of alkenones and Gephyrocapsa coccoliths over the Late Quaternary (Marine Isotope Stages 12 to 9) glacial-interglacial cycles at the western tropical Atlantic

description: Here we present εp measured on natural fossil samples across the glacial-interglacial (G-I) MIS 12 to MIS 9 (454-334 ka) interval at the western tropical Atlantic Ocean Drilling Program Site 925 together with a set of organic and inorganic geochemical, micropaleontological and morphometrical data from Gephyrocapsa coccolith on the same samples. Primary productivity and export production, potentially triggered by shifting growth rates and light level conditions, and the changes in Gephyrocapsa cellular dimensions are controlled by either proxies or direct measurements, allowing to parse out the load of non-CO2 effects on εp. We also determined oxygen and carbon stable isotope vital effects in the near monogeneric separated Gephyrocapsa coccoliths (respectively δ18O Gephyrocapsa-T. sacculifer and εcoccolith)
DOI: 10.17632/zhmwhjjs63.9
title: Carbon isotopic fractionation of alkenones and Gephyrocapsa coccoliths over the Late Quaternary (Marine Isotope Stages 12 to 9) glacial-interglacial cycles at the western tropical Atlantic

description: Here we present εp measured on natural fossil samples across the glacial-interglacial (G-I) MIS 12 to MIS 9 (454-334 ka) interval at the western tropical Atlantic Ocean Drilling Program Site 925 together with a set of organic and inorganic geochemical, micropaleontological and morphometrical data from Gephyrocapsa coccolith on the same samples. Primary productivity and export production, potentially triggered by shifting growth rates and light level conditions, and the changes in Gephyrocapsa cellular dimensions are controlled by either proxies or direct measurements, allowing to parse out the load of non-CO2 effects on εp. We also determined oxygen and carbon stable isotope vital effects in the near monogeneric separated Gephyrocapsa coccoliths (respectively δ18O Gephyrocapsa-T. sacculifer and εcoccolith)
DOI: 10.17632/s3vhpkpz2n.1
title: Data for: Competition exclusion mediated by fencing duration and shrub cover drives the herbaceous community assembly in the shrub interspaces

description: Basic data used in the article
DOI: 10.5281/zenodo.5111034
title: CoVaxxy Tweet IDs data set

description: A collection of Tweet IDs related to Covid-19 Vaccines, gathered from Twitter since Jan 4, 2021. Please see https://arxiv.org/abs/2101.07694 for more information.
DOI: 10.5281/zenodo.4381296
title: HDF files for the time-dependent inversion of the 2016 moderate earthquakes along Chaman fault

description: We use GAMMA software to process Sentinel-1 SLC data and generate InSAR data. After converting the data into UTM coordinates, we use LiCSBAS to perform the time-series analysis, and the resulting HDF files are imported to MATLAB to perform the time-dependent inversion. MATLAB source codes are available. Original Sentinel-1 SLC data are available from https://scihub.copernicus.eu/dhus.
DOI: 10.5281/zenodo.4381295
title: HDF files for the time-dependent inversion of the 2016 moderate earthquakes along Chaman fault

description: We use GAMMA software to process Sentinel-1 SLC data and generate InSAR data. After converting the data into UTM coordinates, we use LiCSBAS to perform the time-series analysis, and the resulting HDF files are imported to MATLAB to perform the time-dependent inversion. MATLAB source codes are available. Original Sentinel-1 SLC data are available from https://scihub.copernicus.eu/dhus.
DOI: 10.5281/zenodo.5109800
title: Wikidata Dump Test

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0
DOI: 10.5281/zenodo.5109799
title: Wikidata Dump Test

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0
DOI: 10.5281/zenodo.5111043
title: ghtorrent-projects Dataset

description: A hypergraph dataset mined from the GHTorrent project is presented. The dataset contains two files 1. project_members.txt: Contains GitHub projects with at least 2 contributors and the corresponding contributors (as a hyperedge). The format of the data is: &lt;repo_id&gt; &lt;simplex_size&gt; &lt;simplex&gt; &lt;name&gt; &lt;created_at&gt; 2. num_followers.txt: Contains all GitHub users and their number of followers. The artifact also contains the SQL queries used to obtain the data from GHTorrent (schema).
DOI: 10.5281/zenodo.5111042
title: ghtorrent-projects Dataset

description: A hypergraph dataset mined from the GHTorrent project is presented. The dataset contains two files 1. project_members.txt: Contains GitHub projects with at least 2 contributors and the corresponding contributors (as a hyperedge). The format of the data is: &lt;repo_id&gt; &lt;simplex_size&gt; &lt;simplex&gt; &lt;name&gt; &lt;created_at&gt; 2. num_followers.txt: Contains all GitHub users and their number of followers. The artifact also contains the SQL queries used to obtain the data from GHTorrent (schema).
DOI: 10.6084/m9.figshare.14998644
title: Batch analysis of FRAP data for diffusion in PVA manuscript

description: Batch analysis data describing diffusivity coefficients and other data extracted using an automated FRAP analysis program. Experiments organized by solute choice and hydrogel formulation.
DOI: 10.6084/m9.figshare.14998650
title: Manual analysis of FRAP data for diffusion in PVA manuscript

description: Manually entered data of diffusivity coefficients, etc., from FRAP analysis of solutes diffusing within hydrogels.
DOI: 10.6084/m9.figshare.14998659
title: Solute data for diffusion in PVA manuscript

description: Relevant data for each solute used in FRAP experiments of solutes diffusing in PVA hydrogels.
DOI: 10.6084/m9.figshare.14998659.v1
title: Solute data for diffusion in PVA manuscript

description: Relevant data for each solute used in FRAP experiments of solutes diffusing in PVA hydrogels.
DOI: 10.6084/m9.figshare.14998668.v1
title: PVA Hydrogel Swelling data used in a diffusion in PVA manuscript

description: Swelling data for PVA hydrogels used in the manuscript on solute diffusion in PVA hydrogels.
DOI: 10.6084/m9.figshare.14998668
title: PVA Hydrogel Swelling data used in a diffusion in PVA manuscript

description: Swelling data for PVA hydrogels used in the manuscript on solute diffusion in PVA hydrogels.
DOI: 10.6084/m9.figshare.14978943
title: DataFiles accompanying "Contrasting community assembly forces drive microbial structural and functional responses to precipitation in an incipient soil system"Contrasting community assembly forces drive microbial structural and functional responses to precipitation in an incipient soil system

description: These files accompany the manuscript <i>Contrasting community assembly forces drive microbial structural and functional responses to precipitation in an incipient soil system. </i>The files include OTU information generated from amplicon sequencing, metagenome statistics, soil environmental characteristics, and , and βNTI functional gene correlations with time and depth of soil samples collected from the Landscape Evolution Observatory (Biosphere 2), Tucson, Arizona.
DOI: 10.6084/m9.figshare.14978943.v2
title: DataFiles accompanying "Contrasting community assembly forces drive microbial structural and functional responses to precipitation in an incipient soil system"Contrasting community assembly forces drive microbial structural and functional responses to precipitation in an incipient soil system

description: These files accompany the manuscript <i>Contrasting community assembly forces drive microbial structural and functional responses to precipitation in an incipient soil system. </i>The files include OTU information generated from amplicon sequencing, metagenome statistics, soil environmental characteristics, and , and βNTI functional gene correlations with time and depth of soil samples collected from the Landscape Evolution Observatory (Biosphere 2), Tucson, Arizona.
DOI: 10.6084/m9.figshare.14978943.v1
title: DataFiles accompanying "Contrasting community assembly forces drive microbial structural and functional responses to precipitation in an incipient soil system"

description: These files accompany the manuscript <i>Contrasting community assembly forces drive microbial structural and functional responses to precipitation in an incipient soil system. </i>The files include OTU information generated from amplicon sequencing, metagenome statistics, and soil environmental characteristics of soil samples collected from the Landscape Evolution Observatory (Biosphere 2), Tucson, Arizona.
DOI: 10.6084/m9.figshare.14998698
title: bNTI Correlation Plots Within Time_New-Data_All-Var_07162021.csv

description: βNTI functional gene correlations with time accompanying manuscript Contrasting community assembly forces drive microbial structural and functional responses to precipitation in an incipient soil system <br>
DOI: 10.6084/m9.figshare.14998698.v1
title: bNTI Correlation Plots Within Time_New-Data_All-Var_07162021.csv

description: βNTI functional gene correlations with time accompanying manuscript Contrasting community assembly forces drive microbial structural and functional responses to precipitation in an incipient soil system <br>
DOI: 10.6084/m9.figshare.14998695
title: bNTI Correlation Plots Within Depth_New-Data_All-Var_data_0162021.csv

description: βNTI functional gene correlations with depth accompanying manuscript Contrasting community assembly forces drive microbial structural and functional responses to precipitation in an incipient soil system
DOI: 10.6084/m9.figshare.14998695.v1
title: bNTI Correlation Plots Within Depth_New-Data_All-Var_data_0162021.csv

description: βNTI functional gene correlations with depth accompanying manuscript Contrasting community assembly forces drive microbial structural and functional responses to precipitation in an incipient soil system
DOI: 10.6084/m9.figshare.14998737
title: Additional file 3 of A catalog of validity indices for step counting wearable technologies during treadmill walking: the CADENCE-Kids study

description: Additional file 3. Spreadsheets displaying the final analytical data set and the corresponding data dictionary.
DOI: 10.6084/m9.figshare.14998737.v1
title: Additional file 3 of A catalog of validity indices for step counting wearable technologies during treadmill walking: the CADENCE-Kids study

description: Additional file 3. Spreadsheets displaying the final analytical data set and the corresponding data dictionary.
DOI: 10.6084/m9.figshare.14998743
title: Additional file 5 of A catalog of validity indices for step counting wearable technologies during treadmill walking: the CADENCE-Kids study

description: Additional file 5. Catalog of validity indices for step counting wearable technologies at different speeds, wear locations, and age groups.
DOI: 10.5517/ccdc.csd.cc25y2s0
title: CCDC 2023952: Experimental Crystal Structure Determination

description: Related Article: Wei Cai, Yiming Zhou, Yanlin He, Kaihong Chen, Cui Yu, You Huang|2021|Org.Lett.|23|5430|doi:10.1021/acs.orglett.1c01770
description: Related Article: wei cai|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc26th9v
title: CCDC 2050287: Experimental Crystal Structure Determination

description: Related Article: Xiang Liu, Jinlei Zhou, Jiatong Lin, Zemin Zhang, Suying Wu, Qiuxing He, Hua Cao|2021|J.Org.Chem.|86|9107|doi:10.1021/acs.joc.1c01094
DOI: 10.6084/m9.figshare.14998769
title: Additional file 2 of The genetic architecture of temperature adaptation is shaped by population ancestry and not by selection regime

description: Additional file 2: Table S1. Details of DNA extraction, Illumina library preparation and sequencing for all samples used in this study.
DOI: 10.6084/m9.figshare.14998769.v1
title: Additional file 2 of The genetic architecture of temperature adaptation is shaped by population ancestry and not by selection regime

description: Additional file 2: Table S1. Details of DNA extraction, Illumina library preparation and sequencing for all samples used in this study.
DOI: 10.6084/m9.figshare.14998796
title: Additional file 1 of Exploring secondary SARS-CoV-2 transmission from asymptomatic cases using contact tracing data

description: Additional file 1.
DOI: 10.6084/m9.figshare.14998797
title: Additional file 1 of Can Achilles tendon xanthoma be distinguished from Achilles tendinopathy using Dixon method MRI? A cross-sectional exploratory study

description: Additional file 1.
DOI: 10.6084/m9.figshare.14998796.v1
title: Additional file 1 of Exploring secondary SARS-CoV-2 transmission from asymptomatic cases using contact tracing data

description: Additional file 1.
DOI: 10.6084/m9.figshare.14998797.v1
title: Additional file 1 of Can Achilles tendon xanthoma be distinguished from Achilles tendinopathy using Dixon method MRI? A cross-sectional exploratory study

description: Additional file 1.
DOI: 10.6084/m9.figshare.14998799
title: Additional file 2 of Exploring secondary SARS-CoV-2 transmission from asymptomatic cases using contact tracing data

description: Additional file 2.
DOI: 10.6084/m9.figshare.14998799.v1
title: Additional file 2 of Exploring secondary SARS-CoV-2 transmission from asymptomatic cases using contact tracing data

description: Additional file 2.
DOI: 10.6084/m9.figshare.14998830.v1
title: Additional file 3 of Third-generation sequencing and metabolome analysis reveal candidate genes and metabolites with altered levels in albino jackfruit seedlings

description: Additional file 3: Supplementary Table S2. The DEGs from the comparison between every two tissues.
DOI: 10.6084/m9.figshare.14998833.v1
title: Additional file 4 of Third-generation sequencing and metabolome analysis reveal candidate genes and metabolites with altered levels in albino jackfruit seedlings

description: Additional file 4: Supplementary Table S3. List of all metabolites identified in albino and green seedling leaves. Supplementary Table S4. List of significantly changed metabolites involved in different metabolic pathways. Supplementary Table S5. Annotation of transcripts involved in carbon fixation and energy metabolism. Supplementary Table S6. Pearson correlation coefficients between genes and metabolites. Supplementary Table S7. Pearson correlation coefficients between metabolic pathway genes and transcription factor genes. Supplementary Table S8. The correlation between qRT-PCR results and FPKM value. root_qRT-PCR, stem_qRT-PCR and leaf_qRT-PCR mean the qRT-PCR results of root, stem and leaf; root_RNA-seq, stem_RNA-seq and leaf_RNA-seq mean the log2fold change results of RNA-seq of root, stem and leaf.
DOI: 10.6084/m9.figshare.14998830
title: Additional file 3 of Third-generation sequencing and metabolome analysis reveal candidate genes and metabolites with altered levels in albino jackfruit seedlings

description: Additional file 3: Supplementary Table S2. The DEGs from the comparison between every two tissues.
DOI: 10.6084/m9.figshare.14998833
title: Additional file 4 of Third-generation sequencing and metabolome analysis reveal candidate genes and metabolites with altered levels in albino jackfruit seedlings

description: Additional file 4: Supplementary Table S3. List of all metabolites identified in albino and green seedling leaves. Supplementary Table S4. List of significantly changed metabolites involved in different metabolic pathways. Supplementary Table S5. Annotation of transcripts involved in carbon fixation and energy metabolism. Supplementary Table S6. Pearson correlation coefficients between genes and metabolites. Supplementary Table S7. Pearson correlation coefficients between metabolic pathway genes and transcription factor genes. Supplementary Table S8. The correlation between qRT-PCR results and FPKM value. root_qRT-PCR, stem_qRT-PCR and leaf_qRT-PCR mean the qRT-PCR results of root, stem and leaf; root_RNA-seq, stem_RNA-seq and leaf_RNA-seq mean the log2fold change results of RNA-seq of root, stem and leaf.
DOI: 10.6084/m9.figshare.14825984
title: Additional file 10 of Heterologous avian system for quantitative analysis of Syncytin-1 interaction with ASCT2 receptor

description: Additional file 10: Nucleotide sequence of pFuTraP-ggTvbS1 in GenBank format. The sequence is compatible with common text editors or can be directly imported to appropriate software (Vector NTi, SnapGene, etc.).
DOI: 10.6084/m9.figshare.14825987
title: Additional file 11 of Heterologous avian system for quantitative analysis of Syncytin-1 interaction with ASCT2 receptor

description: Additional file 11: Nucleotide sequence of pFuTraP-hASCT2-wt in GenBank format. The sequence is compatible with common text editors or can be directly imported to appropriate software (Vector NTi, SnapGene, etc.).
DOI: 10.6084/m9.figshare.14825984.v1
title: Additional file 10 of Heterologous avian system for quantitative analysis of Syncytin-1 interaction with ASCT2 receptor

description: Additional file 10: Nucleotide sequence of pFuTraP-ggTvbS1 in GenBank format. The sequence is compatible with common text editors or can be directly imported to appropriate software (Vector NTi, SnapGene, etc.).
DOI: 10.6084/m9.figshare.14825987.v1
title: Additional file 11 of Heterologous avian system for quantitative analysis of Syncytin-1 interaction with ASCT2 receptor

description: Additional file 11: Nucleotide sequence of pFuTraP-hASCT2-wt in GenBank format. The sequence is compatible with common text editors or can be directly imported to appropriate software (Vector NTi, SnapGene, etc.).
DOI: 10.6084/m9.figshare.14825990
title: Additional file 12 of Heterologous avian system for quantitative analysis of Syncytin-1 interaction with ASCT2 receptor

description: Additional file 12: Nucleotide sequence of pFuTraP-hASCT2-d5 in GenBank format. The sequence is compatible with common text editors or can be directly imported to appropriate software (Vector NTi, SnapGene, etc.).
DOI: 10.6084/m9.figshare.14825993
title: Additional file 13 of Heterologous avian system for quantitative analysis of Syncytin-1 interaction with ASCT2 receptor

description: Additional file 13: Nucleotide sequence of pFuTraP-hASCT2-d7 in GenBank format. The sequence is compatible with common text editors or can be directly imported to appropriate software (Vector NTi, SnapGene, etc.).
DOI: 10.6084/m9.figshare.14825996
title: Additional file 14 of Heterologous avian system for quantitative analysis of Syncytin-1 interaction with ASCT2 receptor

description: Additional file 14: Nucleotide sequence of pFuTraP-hASCT2-d11 in GenBank format. The sequence is compatible with common text editors or can be directly imported to appropriate software (Vector NTi, SnapGene, etc.).
DOI: 10.6084/m9.figshare.14825999
title: Additional file 15 of Heterologous avian system for quantitative analysis of Syncytin-1 interaction with ASCT2 receptor

description: Additional file 15: Nucleotide sequence of pFuTraP-hASCT2-d13 in GenBank format. The sequence is compatible with common text editors or can be directly imported to appropriate software (Vector NTi, SnapGene, etc.).
DOI: 10.6084/m9.figshare.14825993.v1
title: Additional file 13 of Heterologous avian system for quantitative analysis of Syncytin-1 interaction with ASCT2 receptor

description: Additional file 13: Nucleotide sequence of pFuTraP-hASCT2-d7 in GenBank format. The sequence is compatible with common text editors or can be directly imported to appropriate software (Vector NTi, SnapGene, etc.).
DOI: 10.6084/m9.figshare.14826002.v1
title: Additional file 16 of Heterologous avian system for quantitative analysis of Syncytin-1 interaction with ASCT2 receptor

description: Additional file 16: Nucleotide sequence of pFuTraP-hASCT2-d15 in GenBank format. The sequence is compatible with common text editors or can be directly imported to appropriate software (Vector NTi, SnapGene, etc.).
DOI: 10.6084/m9.figshare.14826005.v1
title: Additional file 17 of Heterologous avian system for quantitative analysis of Syncytin-1 interaction with ASCT2 receptor

description: Additional file 17: Nucleotide sequence of pFuTraP-hASCT2-d17 in GenBank format. The sequence is compatible with common text editors or can be directly imported to appropriate software (Vector NTi, SnapGene, etc.).
DOI: 10.6084/m9.figshare.14826002
title: Additional file 16 of Heterologous avian system for quantitative analysis of Syncytin-1 interaction with ASCT2 receptor

description: Additional file 16: Nucleotide sequence of pFuTraP-hASCT2-d15 in GenBank format. The sequence is compatible with common text editors or can be directly imported to appropriate software (Vector NTi, SnapGene, etc.).
DOI: 10.6084/m9.figshare.14826008
title: Additional file 18 of Heterologous avian system for quantitative analysis of Syncytin-1 interaction with ASCT2 receptor

description: Additional file 18: Nucleotide sequence of pFuTraP-hASCT2-d19 in GenBank format. The sequence is compatible with common text editors or can be directly imported to appropriate software (Vector NTi, SnapGene, etc.).
DOI: 10.6084/m9.figshare.14826011
title: Additional file 19 of Heterologous avian system for quantitative analysis of Syncytin-1 interaction with ASCT2 receptor

description: Additional file 19: Nucleotide sequence of pFuTraP-hASCT2-d22 in GenBank format. The sequence is compatible with common text editors or can be directly imported to appropriate software (Vector NTi, SnapGene, etc.).