cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gb8a6u
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Labichea eremaea C.A.Gardner"
 ]
}

 The dataset includes 40 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002356-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25921/qd27-bj97
title: Physical, chemical, and biological water quality observation data at multiple levels from an array of fixed moorings to support hypoxia research in the central basin of Lake Erie, Great Lakes region collected by the NOAA Great Lakes Environmental Research Laboratory and the Cooperative Institute for Great Lakes Research, University of Michigan, since 2017

description: Episodes of low dissolved oxygen are common during the summer in the bottom water of the central basin of Lake Erie. Dissolved oxygen and temperature observations at a high temporal frequency and a broad spatial extent provide the supporting data for the development of experimental hypoxia hindcast and forecast models and aid our understanding of the development and extent of hypoxia. Underwater sensor moorings were deployed across the central basin of Lake Erie to monitor oxygen conditions by the National Oceanic and Atmospheric Administration (NOAA) Great Lakes Environmental Research Laboratory and the Cooperative Institute for Great Lakes Research (CIGLR), University of Michigan. Moorings were deployed during the summer season beginning in 2017 to collect in situ data for the following parameters, water temperature, dissolved oxygen, water current speed and direction, specific conductivity, pH, turbidity, oxidation-reduction potential (ORP), chlorophyll, phycocyanin, dissolved organic matter, and phosphorus at hourly or sub-hourly time intervals.
DOI: 10.15468/dl.ywb6ym
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhododendron sikangense W.P.Fang",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 46 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0267871-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25921/10c1-rt51
title: The Episodic Events - Great Lakes Experiment (EEGLE) observation data in Lake Michigan, the Great Lakes region, coordinated by the NOAA Great Lakes Environmental Research Laboratory from 1997 to 2001

description: The Episodic Events - Great Lakes Experiment (EEGLE) project was coordinated by NOAA Great Lakes Environmental Research Laboratory. The data collected in support of this project are archived in three accessions including: 1) biological and water quality observations; 2) sediment observations; and 3) oceanographic observations.

In August 1997 the NOAA Coastal Ocean Program and National Science Foundation Coastal Ocean Processes began a jointly funded program to study the impact of episodic plume events on sediment and constituent transport and subsequent ecological effects in Lake Michigan referred to as the EEGLE project. The project focused on the importance of episodic events on nearshore-offshore transport and subsequent ecological consequences. The programs goal was to create an integrated observational program and numerical modeling effort to identify, quantify, and develop prediction tools for the winter-spring resuspension event and to assess the impact of this event on the transport and transformation of Biogeochemically Important Materials (BIMS) and on lake ecology.
DOI: 10.15468/dl.qdnfur
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sorghum burmahicum Raizada"
 ]
}

 The dataset includes 42 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0276235-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24587232
title: A1_SampleSheet.csv

description: This table contains the barcodes i5 and i7 used for Vexler et al., 2024 GWAS study. Each i5-i7 combination labels a sample (plate and well position). This is an example of input required to de-multiplex with bcl2fastq software.
DOI: 10.6084/m9.figshare.24587232.v1
title: A1_SampleSheet.csv

description: This table contains the barcodes i5 and i7 used for Vexler et al., 2024 GWAS study. Each i5-i7 combination labels a sample (plate and well position). This is an example of input required to de-multiplex with bcl2fastq software.
DOI: 10.15468/dl.vhqsnq
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Peru, Ecuador)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tamandua tetradactyla (Linnaeus, 1758)"
 ]
}

 The dataset includes 140 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002366-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gnvvfm
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhododendron souliei Franch.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 97 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0267872-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25921/jvks-b587
title: Oceanographic, surface meteorological, and chemical water quality parameter data collected from moored Real-time Coastal Observation Network (ReCON) buoys in the Great Lakes region by NOAA Great Lakes Environmental Research Laboratory since 2004

description: NOAA Great Lakes Environmental Research Laboratory has collected observations from in-situ Real-time Coastal Observation Network (ReCON) moored buoys during the open water season, in the Great Lakes since 2004. The ReCON buoy network provides continuous, real-time observations facilitates modification of sampling parameters in anticipation of episodic events, facilitates the collection of field samples in response to episodic events, supports long-term research, and contributes to sensor and system development. Parameters collected include air temperature, chlorophyll, conductivity, current profiles, depth, dissolved organic matter, dissolved oxygen, photosynthetically active radiation (PAR), pressure (hydrostatic), specific conductivity, total dissolved solids, water temperature, wind direction and speed, and wave height, direction and period. Five quality assurance for real-time oceanographic data (QARTOD) tests were run on the observations including gross range, climatological, spike, rate of change, and flat line tests. The highest value from the five tests was included under the “Qartod” column. If data were known to be invalid, that line of data was removed from the dataset.
DOI: 10.15468/dl.8necrr
title: Occurrence Download

description: A dataset containing 80129 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Honduras",
 "Geometry POLYGON((-87.20416 15.8891,-85.50797 16.23664,-85.63246 16.80203,-87.29234 16.39225,-87.20416 15.8891))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 2000-2023"
 ]
}

 The dataset includes 80129 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0289349-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bkgket
title: Occurrence Download

description: A dataset containing 296 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhododendron spinuliferum Franch.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 296 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0267874-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cda8jd
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhombophyllum rhomboideum (Salm-Dyck) Schwantes"
 ]
}

 The dataset includes 67 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102938-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u2k8ne
title: Occurrence Download

description: A dataset containing 2121 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinus longaeva D.K.Bailey"
 ]
}

 The dataset includes 2121 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0289350-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nc6tck
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhododendron strigillosum Franch.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 108 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0267875-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w84pad
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lacaena bicolor Lindl."
 ]
}

 The dataset includes 41 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002370-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.578qd6
title: Occurrence Download

description: A dataset containing 1523 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rubus parvifolius L.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1523 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067208-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4v49hp
title: Occurrence Download

description: A dataset containing 437 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Globodera rostochiensis (Wollenweber, 1923) Skarbilovich, 1959"
 ]
}

 The dataset includes 437 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0276246-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.694t97
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Schinus sinuata (Griseb.) Engl."
 ]
}

 The dataset includes 38 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067207-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kxwh7r
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lachenalia alba W.F.Barker ex G.D.Duncan"
 ]
}

 The dataset includes 33 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002383-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24585045
title: D_1_PotatoMASH_core_339_SMAPv4_DMv6_1.bed

description: Custom BED-formatted file listing the coordinates of the regions between primers of the 339 PotatoMASH loci in the potato genome version DM V6. Each region is defined by the first nucleotide downstream of the forward primer binding site to the last nucleotide upstream of the reverse primer binding site. This file is formatted to be used with SMAP V4 haplotype-sites.
DOI: 10.15468/dl.4smk6b
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Cherax quadricarinatus (von Martens, 1868)"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0267880-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24585045.v1
title: D_1_PotatoMASH_core_339_SMAPv4_DMv6_1.bed

description: Custom BED-formatted file listing the coordinates of the regions between primers of the 339 PotatoMASH loci in the potato genome version DM V6. Each region is defined by the first nucleotide downstream of the forward primer binding site to the last nucleotide upstream of the reverse primer binding site. This file is formatted to be used with SMAP V4 haplotype-sites.
DOI: 10.15468/dl.rtdrab
title: Occurrence Download

description: A dataset containing 437 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Globodera rostochiensis (Wollenweber, 1923) Skarbilovich, 1959"
 ]
}

 The dataset includes 437 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0276259-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ms7vf
title: Occurrence Download

description: A dataset containing 170 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Labichea nitida Benth."
 ]
}

 The dataset includes 170 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002357-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hzznjq
title: Occurrence Download

description: A dataset containing 118 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhododendron tatsienense Franch.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 118 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0267876-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24585027
title: B_5_coverage_PotatoMASH_339_core.bed

description: File in bed format containing the coordinates of the middle point of each PotatoMASH locus. It is a required input file in the case that it is convenient to check the coverage per sample and locus by using the script B_5_coverage_per_locus.sh.
DOI: 10.6084/m9.figshare.24585027.v1
title: B_5_coverage_PotatoMASH_339_core.bed

description: File in bed format containing the coordinates of the middle point of each PotatoMASH locus. It is a required input file in the case that it is convenient to check the coverage per sample and locus by using the script B_5_coverage_per_locus.sh.
DOI: 10.15468/dl.gmravv
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Manis Linnaeus, 1758"
 ]
}

 The dataset includes 104 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0276247-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7289/v51v5c82
title: National Coral Reef Monitoring Program: Assessing and monitoring cryptic reef diversity of colonizing marine invertebrates using autonomous reef monitoring structures (ARMS) deployed at coral reef sites across American Samoa

description: This collection includes species identification data gathered from Autonomous Reef Monitoring Structures (ARMS). These ARMS are used by the NOAA Coral Reef Ecosystem Program (CREP) to assess and monitor cryptic reef diversity in American Samoa as part of the ongoing National Coral Reef Monitoring Program (NCRMP). Developed in collaboration with the Census of Marine Life (CoML) Census of Coral Reef Ecosystems (CReefs), ARMS are designed to mimic the structural complexity of a reef and attract/collect colonizing marine invertebrates. The key innovation of the ARMS method is that biodiversity is sampled over precisely the same surface area in the exact same manner. Thus, the use of ARMS is a systematic, consistent, and comparable method for monitoring the marine cryptobiota community over time.

This data was gathered at specific reef sites across American Samoa. At these sites, divers entered the water and deployed and/or recovered the ARMS unit. Each unit used to gather this data consists of 23 cm x 23 cm gray, type 1 PVC plates stacked in alternating series of 4 open and 4 obstructed layers and attached to a base plate of 35 cm x 45 cm which is affixed to the reef. They are designed to mimic the structural complexity of a reef and attract colonizing invertebrates. Please see the data to determine how long a particular unit was underwater as soak times can vary by location.

Upon recovery, each ARMS unit was encapsulated, brought to the surface, and disassembled and processed on-board the research ship. Disassembled plates were photographed to document recruited sessile organisms and scraped clean and preserved in 95% ethanol for future DNA processing. Recruited motile organisms were then sieved into 3 size fractions: 2 mm, 500 um, and 100 um. The 500 um and 100 um fraction was bulked and preserved in 95% ethanol for future DNA processing. The 2 mm fraction was sorted into morphospecies. These DNA sequencing data are not included in this collection.
DOI: 10.7289/v5pr7t9h
title: National Coral Reef Monitoring Program: Assessing and monitoring cryptic reef diversity of colonizing marine invertebrates using autonomous reef monitoring structures (ARMS) deployed at coral reef sites across the Hawaiian Archipelago

description: This collection includes species identification data gathered from Autonomous Reef Monitoring Structures (ARMS). These ARMS are used by the NOAA Coral Reef Ecosystem Program (CREP) to assess and monitor cryptic reef diversity in the Hawaiian Archipelago as part of the ongoing National Coral Reef Monitoring Program (NCRMP). Developed in collaboration with the Census of Marine Life (CoML) Census of Coral Reef Ecosystems (CReefs), ARMS are designed to mimic the structural complexity of a reef and attract/collect colonizing marine invertebrates. The key innovation of the ARMS method is that biodiversity is sampled over precisely the same surface area in the exact same manner. Thus, the use of ARMS is a systematic, consistent, and comparable method for monitoring the marine cryptobiota community over time.

This data was gathered at specific reef sites across the Hawaiian Archipelago. At these sites, divers entered the water and deployed and/or recovered the ARMS unit. Each unit used to gather this data consists of 23 cm x 23 cm gray, type 1 PVC plates stacked in alternating series of 4 open and 4 obstructed layers and attached to a base plate of 35 cm x 45 cm which is affixed to the reef. They are designed to mimic the structural complexity of a reef and attract colonizing invertebrates. Please see the data to determine how long a particular unit was underwater as soak times can vary by location.

Upon recovery, each ARMS unit was encapsulated, brought to the surface, and disassembled and processed on-board the research ship. Disassembled plates were photographed to document recruited sessile organisms and scraped clean and preserved in 95% ethanol for future DNA processing. Recruited motile organisms were then sieved into 3 size fractions: 2 mm, 500 um, and 100 um. The 500 um and 100 um fraction was bulked and preserved in 95% ethanol for future DNA processing. The 2 mm fraction was sorted into morphospecies. These DNA sequencing data are not included in this collection.
DOI: 10.15468/dl.84wxu7
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-123.17133 -18.67767,-34.82867 -18.67767,-34.82867 16.67767,-123.17133 16.67767,-123.17133 -18.67767))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Puma concolor concolor"
 ]
}

 The dataset includes 54 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0267881-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.