cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3525410.v1
title: Appendix B. A table showing fungal disease severity (percentage of leaf surface affected) on five of the congeneric species pairs of taxonomically matched plants.

description: A table showing fungal disease severity (percentage of leaf surface affected) on five of the congeneric species pairs of taxonomically matched plants.
DOI: 10.6084/m9.figshare.5151622.v1
title: EVI MAIAC over the Amazon Forests filtered by Fourier Transform

description: Inter-annual monthly mean values of the enhanced vegetation index (EVI) over the Amazon forest obtained by the Moderate Resolution Imaging Spectroradiometer (MODIS) sensor, on board the Terra and Aqua satellites (EOS AM, NASA); processed with multiangle implementation of atmospheric correction algorithm (MAIAC) and filtered using the Fourier Transform (FT) to keep only the annual and bis-annual frequencies that compose the EVI signal.The image is a .tif with 12 bands corresponding to the month of the year (first is january)
DOI: 10.6084/m9.figshare.9892112.v1
title: Working title: Evidence-based Clinical Decision Support Systems for the prediction and detection of three disease states in critical care: A systematic literature review. Extended data - Table 2-Search strategy for respiratory distress or respiratory failure in MEDLINE.docx

description: Extended data - Table 2-Search strategy for respiratory distress or respiratory failure in MEDLINE
DOI: 10.17632/fz3yhx3trc
title: Data for "The impact of behavioral and team characteristics on football club fans' consumption in Brazil" published by PODIUM Sport, Leisure and Tourism Review

description: Repository of supplementary research files for " The impact of behavioral and team characteristics on football club fans' consumption in Brazil ". There are four files available: 1) the original article published in PODIUM Sport, Leisure and Tourism Review in Portuguese; 2) the article translated into English for more effective dissemination; 3) raw database in .csv format; and 4) structured and organized database in .sav format.

The variables are operationalized in sections 3.2 and 3.3 of the article. The coding of the database may be found in the article's Appendix, which also contains the research questionnaire.


Abstract of article:

Objective of the study: The purpose of this study was to see how team image, behavioral loyalty, psychological commitment, and team qualities affect the consumption behavior of football club fans.
Methodology/Approach: The suggested model was tested using PLS-SEM, with the goal of maximizing the explanation of the variance of the endogenous variable of interest. A structured questionnaire distributed to Brazilian fans received 330 responses.
Originality/Relevance: Based on six artifacts from the questionnaire, an original concept for the building of the composite construct "Consumer Fan" was selected. Based on prior findings, this is the first study to examine fan consumption behavior using team image, behavioral loyalty, psychological commitment, fan characteristics, and team attributes.
Main results: The findings revealed that psychological commitment, behavioral loyalty, team image, football practice, income, team success, and the origins of the relationship with the favorite team all had a substantial positive impact on the consumption behavior of Brazilian football club fans.
Theoretical/methodological contributions: The study's key contribution is the unique combination of diverse conceptions and sociodemographic and behavioral factors to measure fan consumption potential, filling a crucial theoretical gap. It is also worth mentioning that this study focuses on the fan as a consumer, which has not before been studied in the literature.
Contributions to management: This research suggests techniques for managers to improve fans' consumption potential. The necessity of creating a fan's psychological connection to the team is emphasized.
DOI: 10.6084/m9.figshare.22580974.v1
title: A trained fall detection model.pt

description: A trained fall detection model
DOI: 10.6084/m9.figshare.25712355.v1
title: The source dataset of the study named "The gaze and emotional expression of pictures of human faces in a joint reaction time task modulated the compatible effects on reaction times"

description: This is the dataset for the article titled "The gaze and emotional expression of pictures of human faces in a joint reaction time task modulated the compatible effects on reaction times". The unit is milliseconds.
DOI: 10.6084/m9.figshare.21675227.v1
title: Gene-vegetarianism interactions detected in genome-wide analyses across 30 serum biomarkers: a population-based cohort study in UK Biobank (Supplementary Tables)

description: <strong>Objectives</strong>: To determine the associations of vegetarianism with 30 serum biomarkers, and to identify genetic variants that modify these associations. <strong>Design</strong>: A population-based cohort study. <strong>Setting</strong>: United Kingdom. <strong>Participants</strong>: A total of 155,375 UK Biobank participants with biomarker measurements, genetic data, dietary information, and relevant covariates were included. A rigorous sample of vegetarians was defined based on consistent responses to four questions in two dietary surveys. <strong>Main outcome measures</strong>: Effects of vegetarianism and gene-vegetarianism interactions on 30 serum biomarkers for diabetes, cancer, cardiovascular, skeletal, renal, and liver diseases. <strong>Results</strong>: Compared to a matched sample of non-vegetarians, vegetarians had significantly lower levels of all cholesterol measures and vitamin D, and a higher level of triglycerides, while no significant differences were observed for sex hormones. We found a genetic variant, rs72952628 (C/T), that modified the association between vegetarianism and serum calcium (<em>P</em> for interaction = 4.47e-08). Vegetarianism was associated with a 0.13 units decrease (95% confidence interval -0.09 to -0.18) in calcium in CC individuals, but with 0.30 units increase (0.14 to 0.46) in CT individuals. This variant is located in the gene <em>MMAA</em>, which is part of the vitamin B12 metabolism pathway; B12 has a high nutrient deficiency potential in vegetarians. Gene-based interaction analysis revealed two additional significant genic regions, <em>RNF168</em> in testosterone (<em>P</em> = 1.45e-06) and <em>ZNF277</em> in eGFR (<em>P</em> = 6.76e-07), which have previously been associated with testicular and renal traits, respectively. <strong>Conclusions</strong>: Vegetarianism was associated with 15 of the 30 serum biomarkers examined, and evidence of genetic modifications was found for three biomarkers: calcium, testosterone, and eGFR.
DOI: 10.6084/m9.figshare.28233677.v1
title: C5.all.fna

description: The genome of <i>Ensifer</i> C5, which was isolated from the roots of <i>Brassica napus</i>.
DOI: 10.6084/m9.figshare.25981924.v1
title: Multidimensional food security analysis: the Extent and determinants, the case of Chencha district, Southern Ethiopia.

description: This project contains the following underlying data: one in Excel, one in SPSS, and the remaining data in Word document formats. The Excel data refers to the household survey results on the multidimensional food security status of households using 24 generic questions. It has combined the most commonly used food security indicators: HFIAS, CSI, FCS, HDDS, rCSI, and SAFS. The SPSS data entails demographic and livelihood strategy-related data. Whereas the data in word formats includes the extended data of household survey questionnaires, FGDs, and KII checklists and their transcripts. Besides this, the project contains the informed consent ethical clearance letter obtained from the Institutional Review Board (IRB) of Addis Ababa University College of Development Studies in PDF format.
DOI: 10.6084/m9.figshare.5270896.v1
title: Trustworthiness ratings

description: The data set containing trustworthiness ratings by the participants for tired and neutral stimuli pictures.
DOI: 10.6084/m9.figshare.9826115.v1
title: Circular extrachromosomal DNA promotes accessible chromatin and high oncogene expression

description: The pixel intensity quantification of ATAC-see confocal images. It is used for creating the Extended Data Figure 7d of the manuscript entitled "Circular extrachromosomal DNA promotes accessible chromatin and high oncogene expression" . The brief ATAC-see method for metaphase chromosome spread is as follow: metaphase sample was prepared onto a 1-mm coverslip and incubated with 50 nM of ATTO-590 transposome under 37°C for 30 min in the dark. After washed twice by 2× SSC with 0.01% SDS for 15 min, and once by 2× SSC with 0.2% Tween-20 for 15 min, sample was subjected to FISH procedures, and finally stained by 1 µg/ml DAPI and mount with VECTASHIELD antifade mounting media (Vector Laboratories).<br>
DOI: 10.6084/m9.figshare.21517038.v1
title: Supplementary Material for: Collagen IV and Podocyte-Related Gene Variants in Patients with Concurrent IgA Nephropathy and Thin Basement Membrane Nephropathy

description: <b><i>Introduction:</i></b> IgA nephropathy is the most common primary glomerulonephritis among adults in clinic. Thin basement membrane nephropathy is often underestimated or even omitted if it coincides with IgA nephropathy. Therefore, it is necessary to study the epidemiological, clinical, and molecular characteristics of the concurrence of this entity. <b><i>Methods:</i></b> Eight patients with concurrent IgA nephropathy and thin basement membrane nephropathy (IgA-T) were retrospectively analyzed based on their clinicopathological characteristics. Genetic analysis was performed using whole-exome sequencing and Sanger’s sequencing. Data of the patients with IgA nephropathy and normal basement membrane (IgA-N) and variants in the local in-house database were used as controls. All candidate variants were assessed in silico. <b><i>Results:</i></b> The clinical manifestations of patients with IgA-T were hematuria, proteinuria, and renal insufficiency. Histopathological analysis showed mild mesangial hyperplasia, focal segmental glomerulosclerosis, podocyte activation, and foot process fusion. Crescent was rarely seen. <i>COL4A</i> and/or podocyte cytoskeleton and mitochondria-related gene variants were detected in seven IgA-T patients. Three patients exhibited pathogenic variants of <i>COL4A</i>, including a new variant. All IgA-T and one IgA-N patient possessed <i>ITGB4</i> and/or <i>PLEC</i> variants, but there was no corresponding genotype-phenotype relationship. Six patients possessed other podocyte cytoskeleton and mitochondria-related gene variants such as <i>NPHS2</i>, <i>SRGAP1</i>, <i>MYO1E</i>, <i>MYO1C</i>, <i>WT1</i>, <i>and COQ9</i>, which were first reported in patients with IgA-T and were not in controls. Altogether, there were no significant differences in the degrees of proteinuria, serum creatinine, and eGFR during the follow-up period of 5–10 years, but there was a significant difference in the degree of proteinuria between IgA-T patients with podocyte-related gene variants and IgA-N patients. In the IgA-T group, patients with podocyte-related gene variants seemed predisposed to progress than patients without those variants, with higher proteinuria and serum creatinine and reduced eGFR. <b><i>Conclusion:</i></b> Concurrent thin basement membrane nephropathy and/or heterozygous <i>COL4A</i> gene pathogenic variants do not necessarily predict the short-term progress of sporadic IgA nephropathy in adults. Predisposition factors for this disease progression should be considered for detecting the variants of <i>COL4A</i> and podocyte cytoskeleton and mitochondria-related genes simultaneously, which also manifests the complexity and heterogeneity of IgA nephropathy with concurrent thin basement membrane nephropathy.
DOI: 10.6084/m9.figshare.21520950.v2
title: Nanopore R9.4.1 CHM13 methylation frequencies

description: This dataset contains the methylation frequencies for the CHM13 computed using the complete nanopore public dataset available at https://github.com/marbl/CHM13. <br> Nanopore raw signals for 390 Gbp of data (126x coverage) were downloaded and then converted to BLOW5 format using slow5tools. Then, they were basecalled using buttery-eel under Guppy 6.3.7 high accuracy mode. Reads that passed the qscore filter (&gt;7) were mapped using minimap2 2.17 to hg38noAlt genome. Next, methylation calling was performed using f5c 1.1. Finally, the methylation frequencies output by f5c in tsv format were converted to bigwig format. <br> <br> <strong>Commands:</strong> <strong>basecall gridION data</strong> <em>buttery-eel -i min_grid.blow5 --guppy_bin /install/ont-guppy-6.3.7/bin/ --config dna_r9.4.1_450bps_hac.cfg -x cuda:all -q 7 -o reads_min_grid.fastq --port 5555 --use_tcp</em> <br> <strong>basecall promethION data<br> </strong><em>buttery-eel -i prom.blow5 --guppy_bin /install/ont-guppy-6.3.7/bin/ --config dna_r9.4.1_450bps_hac_prom.cfg -x cuda:all -q 7 -o reads_prom.fastq --port 5556 --use_tcp</em> <br> <strong>alignment</strong> <em>minimap2 -ax map-ont -t40 --secondary=no /genome/hg38noAlt.idx chm13_merged_pass.fastq &gt; hg2_merged_pass.sam</em> <em>samtools sort -@40 -o chm13_merged_pass.bam chm13_merged_pass.sam </em> <em>samtools index chm13_merged_pass.bam</em> <strong>methylation calling</strong> <em>f5c index -t20 chm13_merged_pass.fastq --skip-slow5-idx --slow5 hg2_merged.blow5</em> <em> f5c call-methylation -x hpc-low -t20 -g /genome/hg38noAlt.fa -r chm13_merged_pass.fastq -b chm13_merged_pass.bam --slow5 chm13_merged.blow5 &gt; hg2_merged_pass_f5c_meth.tsv</em> <em>f5c meth-freq -s -i chm13_merged_pass_f5c_meth.tsv -o chm13_merged_pass_f5c_methfreq.tsv</em> <br> <strong>convert to bigwig</strong> <em>tail -n +2 chm13_merged_pass_f5c_methfreq.tsv | awk '{print $1"\t"$2"\t"$3+1"\t"$7}' | sort -k1,1 -k2,2n &gt; meth_freq.bedgraph</em> <em>bedGraphToBigWig meth_freq.bedgraph /genome/hg38.chrom.sizes chm13_merged_pass_f5c_methfreq.bigwig</em> <br> <br>
DOI: 10.15468/dl.swjtve
title: Occurrence Download

description: A dataset containing 308 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Potentilla saundersiana Royle",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 308 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013380-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.5827635.v1
title: Raw Data and Simulation Code

description: The compressed file "Raw Data and Simulation Code.zip" contains raw data obtained in experiments, a file explaining the data content (readme.pdf), as well as the simulation code (Mathematica notebook) for performing numerical simulations.
DOI: 10.6084/m9.figshare.736454.v1
title: Comparison of edge-finding and extended edge-finding filtering algorithms

description: Raw data from experiments reported in two forthcoming papers: quadratic edge-finding in the journal <em>Constraints</em>, and quadratic extended edge-finding in the <em>Int. J. of Planning and Scheduling</em>. Edge-finding is a filtering algorithm used in constraint-based scheduling, a relaxation of the NP-Hard cumulative resource constraint. Extended edge-finding is a related algorithm. We propse new O(n^2) algorithms for each of these two filtering algorithms, improving on previous results, and compare the effectiveness of our algorithm with the state-of-the-art in cumulative propagation techniques. Includes several figures omitted from publication.
DOI: 10.17632/86wf7xfz5x
title: High-throughput mapping of long-range neuronal projection using in situ sequencing, Chen et al., dataset 3
DOI: 10.6084/m9.figshare.21304767.v1
title: Patterns of human activity in green spaces managed by Conservation Halton using anonymized locations of smart devices

description: We used anonymized locations of smart devices to determine how people used green spaces for properties managed by Conservation Halton. The smart device data was acquired from Mapbox Movement (https://www.mapbox.com/movement-data). Conservation Halton is a regional non-profit responsible for managing green spaces center around Halton Region in Ontario, Canada. The data was acquired for June, July, and August of 2020. This data is to complement a paper soon to be published in PLoS Computational Biology
DOI: 10.6084/m9.figshare.29094320.v1
title: Table 3. "Employability Skills" Article Findings in 2022.xlsx

description: "Employability Skills" Article Findings in 2022
DOI: 10.17632/x72b3zgrrf
title: Tribological Data for Reinforced Aluminum-Silicon Alloys

description: These data contain the effects of stirring time and temperature, type and percentage of nanoparticles, type of aluminum alloys, and heat treatment on tribological behavior of aluminum alloys.
DOI: 10.6084/m9.figshare.12186516.v1
title: A dataset of clinically recorded radar vital signs with synchronised reference sensor signals

description: In a previous publication the database of our phase 0 study on the feasibility of non-contact vital signs monitoring was published. Based on the data it has been shown that besides pulse and respiration, radar systems are also capable to measure the heart sounds of the test persons. The heart sound offers a significant advantage when trying to measure the heartbeat as precisely as possible, as it has a very concise and sharp morphology. This precision is, e.g., very important for determining the parameters of heart rate variability.<br>Following a successful phase 0, a clinical evaluation of the radar has been planned and performed. In phase 1, 30 healthy subjects were measured with the radar and a synchronised reference device, the so-called Task Force Monitor. In addition to non-contact continuous blood pressure, the Task Force Monitor can measure ECG, ICG and impedance. It also evaluates the raw signals and determines additional values such as heart rate, stroke volume, cardiac output, thoracic fluid content, total peripheral resistance, and many more.<br>Besides a resting scenario, scenarios such as the Valsalva maneuver, tilt table test or breath holding were performed to evoke different triggers of the autonomic nervous system. The measurements were performed and monitored by medical professionals at the university hospital Erlangen. The study was approved by the ethics committee of the Friedrich-Alexander-Universität Erlangen-Nürnberg (No. 85_15B). All research was performed in accordance with relevant guidelines and regulations. The informed consent was obtained from all subjects in human trials.<br><br>Due to size constrains the dataset is split in three zip files. Download the files and unzip them in one folder using a tool like "7zip" to get the whole database.
DOI: 10.6084/m9.figshare.24534916.v1
title: Supplementary Table S3: Primers used in quantitative real-time PCR.

description: Supplementary Table S3: Primers used in quantitative real-time PCR.
DOI: 10.6084/m9.figshare.1310445.v1
title: Dermatological Journals Indexed in MEDLINE/PubMed

description: Dermatological Journals Indexed in MEDLINE/PubMed
DOI: 10.6084/m9.figshare.14196344.v4
title: Fibroblast polarization drives skin regeneration versus fibrosis in adult reindeer

description: In adult mammals, skin wound healing has evolved to favor rapid repair through the formation of fibrotic scar. These dermal scars are dysfunctional and may lead to chronic disfigurement and disability, yet the biologic mechanisms that drive fibrosis and prevent tissue regeneration remain unknown. Here, we report that reindeer (<i>R</i><i>angifer tarandus</i>) antler velvet exhibits regenerative wound healing, whereas identical full-thickness injury in dorsal back skin of the same animal forms fibrotic scar. This regenerative capacity is retained even following ectopic transplantation of velvet to a scar-forming site, demonstrating that this latent regenerative capacity is innate to velvet cells and independent of local factors derived from the growing antler. Single cell RNA-sequencing of uninjured skin revealed a marked divergence in resting fibroblast transcriptional states and immunomodulatory function. Uninjured velvet fibroblast shared a striking resemblance with human fetal fibroblasts whereas uninjured back skin fibroblasts exhibited an overrepresentation of pro-inflammatory genes resembling adult human fibroblasts. Identical skin injury resulted in site-specific fibroblast polarization; back fibroblasts exacerbated the inflammatory response, whereas velvet fibroblasts adopted an immunosuppressive state and reverted back to a regeneration-competent ground state. Consequently, velvet wounds exhibited an accelerated adoption of anti-inflammatory immune states and an expedited resolution of immune response. This study demonstrates reindeer as a novel comparative mammalian model to study both adult skin regeneration (velvet) and scar formation (back skin) within the same animal. Our study underscores the importance of fibroblast heterogeneity in shaping local immune cell functions that ultimately polarize wound healing outcomes. Purposeful, acute modulation of fibroblast-mediated immune signaling represents an important therapeutic avenue to mitigate scar and improve wound healing.