cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1136081_d77
title: Ex3R43C2 NR2A-4 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d71
title: Ex3R43C2 Gephyrin-1 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d69
title: Ex3R43C2 PV-1 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d72
title: Ex3R43C2 GluR1-6 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d66
title: Ex3R43C2 vGluT1-2 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d68
title: Ex3R43C2 vGAT-2 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d60
title: Ex3R43C2 DAPI-6 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d70
title: Ex3R43C2 GAD6567-4 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.26131/irsa594
title: IRAS Point Source Catalog joined with Working Survey Database

description: The IRAS Point Source Catalog includes 245,889 well-confirmed point sources, i.e., sources with angular extents less than approximately 0.5 arcmin, 0.5 arcmin, 1.0 arcmin, and 2.0 arcmin in the in-scan direction at 12, 25, 60, and 100 micron, respectively. The most complete observational and data reduction history for point sources is contained within the Working Survey Data Base (WSDB). The WSDB is broken up into 20 files, one for each range of ecliptic longitudes called a Lune. 

This dataset or service is made available by the Infrared Science Archive (IRSA) at IPAC, which is operated by the California Institute of Technology under contract with the National Aeronautics and Space Administration.
DOI: 10.6084/m9.figshare.1136081_d61
title: Ex3R43C2 GFP-4 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d64
title: Ex3R43C2 DAPI-2 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d65
title: Ex3R43C2 GABAARa1-8 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d62
title: Ex3R43C2 DAPI-7 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d59
title: Ex2R18C1 Synapsin1-3 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d63
title: Ex3R43C2 PSD95-2 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.26131/irsa595
title: IRAS Point Source Catalog joined with Hours-Confirmation and Working Survey Database

description: The IRAS Point Source Catalog includes 245,889 well-confirmed point sources, i.e., sources with angular extents less than approximately 0.5 arcmin, 0.5 arcmin, 1.0 arcmin, and 2.0 arcmin in the in-scan direction at 12, 25, 60, and 100 micron, respectively. The most complete observational and data reduction history for point sources is contained within the Working Survey Data Base (WSDB). The WSDB is broken up into 20 files, one for each range of ecliptic longitudes called a Lune. The next level of source confirmation involved observations with time separations from 100 minutes up to 36 hours. Most objects were observed on consecutive orbits, but the upper limit was chosen to accommodate recovery scans for areas of sky not covered satisfactorily on the first attempt for a variety of reasons. Generally, hours-confirmation was run on groups of three successive Satellite Operation Programs, although this rule was violated during the minisurvey (SOPs 29-44) and in two cases of survey restarts (SOPs 57-61, 256-257, and 265). 

This dataset or service is made available by the Infrared Science Archive (IRSA) at IPAC, which is operated by the California Institute of Technology under contract with the National Aeronautics and Space Administration.
DOI: 10.6084/m9.figshare.c.3654725_d8
title: Additional file 2: of Disruption of the microbiota across multiple body sites in critically ill children

description: Summary of all samples collected from PICU and non-PICU subjects in this study with relevant clinical information. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.c.3654737_d5
title: Additional file 4: of Frequency of influenza H3N2 intra-subtype reassortment: attributes and implications of reassortant spread

description: Separate segment and full genome ML phylogenetic trees in machine readable (Newick) formats (9 sheets). (XLSX 267 kb)
DOI: 10.6084/m9.figshare.c.3654737_d4
title: Additional file 5: of Frequency of influenza H3N2 intra-subtype reassortment: attributes and implications of reassortant spread

description: BEAST XML files and a table of BEAST run seeds. (XLSX 407 kb)
DOI: 10.6084/m9.figshare.c.3654737_d3
title: Additional file 6: of Frequency of influenza H3N2 intra-subtype reassortment: attributes and implications of reassortant spread

description: Reassortant lineage passaging information. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3654737_d2
title: Additional file 2: of Frequency of influenza H3N2 intra-subtype reassortment: attributes and implications of reassortant spread

description: Reference sequence accession numbers: a) IVR and IRD and b) GISAID. (XLSX 181 kb)
DOI: 10.6084/m9.figshare.c.3654737_d1
title: Additional file 1: of Frequency of influenza H3N2 intra-subtype reassortment: attributes and implications of reassortant spread

description: a) Nested PCR primers and b) universal and segment-specific primers. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3654725_d1
title: Additional file 1: of Disruption of the microbiota across multiple body sites in critically ill children

description: Summary of study population. (XLSX 14 kb)
DOI: 10.15468/dl.6cet3a
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Caracterización morfológica de hongos y bacterias de suelo, agua y sedimento en la cuenca de la Quebrada Lizama"
 ]
}

 The dataset includes 164 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032609-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3652424_d5
title: Additional file 1: of LNDriver: identifying driver genes by integrating mutation and expression data based on gene-gene interaction network

description: The candidate drivers with p-values less than 0.05 in HNSC. (XLS 20 kb)
DOI: 10.6084/m9.figshare.c.3652424_d6
title: Additional file 4: of LNDriver: identifying driver genes by integrating mutation and expression data based on gene-gene interaction network

description: The results of KEGG and GO enrichment analysis in HNSC. (XLS 114 kb)
DOI: 10.6084/m9.figshare.c.3652424_d4
title: Additional file 2: of LNDriver: identifying driver genes by integrating mutation and expression data based on gene-gene interaction network

description: The candidate drivers with p-values less than 0.05 in KIRC. (XLS 19 kb)
DOI: 10.6084/m9.figshare.c.3646691_d2
title: Additional file 2: of Laboratory tests as short-term correlates of stroke

description: The Relative Risk (with confidence intervals), the correlations computed between different tests, the description and range of observed values for each test. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3646646_d1
title: Additional file 1: of Identification of low abundance microbiome in clinical samples using whole genome sequencing

description: Table listing the read counts of the gastric biopsy samples after each filtering step. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3646637_d2
title: Additional file 2: Table S1. of Single-cell RNA sequencing reveals dynamic changes in A-to-I RNA editome during early human embryogenesis

description: Candidate A-to-I RNA-editing sites. Table S3. Editing levels of A-to-I RNA-editing events that may recode the proteins. Table S4. Editing levels of A-to-I RNA-editing events in miRNA-targeted mRNA regions. Table S5. Significant GSEA results of the genes that are preferably edited in miRNA-targeted regions in cells crossing oocyte to 4-cell stages. (XLSX 582Â kb)
DOI: 10.6084/m9.figshare.c.3646553_d10
title: Additional file 9: File S2. of RNA sequencing to characterize transcriptional changes of sexual maturation and mating in the female oriental fruit fly Bactrocera dorsalis

description: Enrichment analysis of KEGG pathways for the differentially expressed genes. (XLS 25Â kb)
DOI: 10.6084/m9.figshare.c.3646553_d8
title: Additional file 5: Figure S2. of RNA sequencing to characterize transcriptional changes of sexual maturation and mating in the female oriental fruit fly Bactrocera dorsalis

description: Gene ontology (GO) analyses of transcriptome sequences predicted to participate in: (A) biological processes and (B) molecular functions. Data are presented as level 3 GO categorization for molecular function and level 2 GO categorization for biological process. Classified gene objects are showed as percentages (in brackets) of the total number according to the GO assignments. (ZIP 1448Â kb)
DOI: 10.6084/m9.figshare.c.3646226_d5
title: Additional file 4: Table S3. of Comparative transcriptome analysis of wheat embryo and endosperm responses to ABA and H2O2 stresses during seed germination

description: Primer sequences used for qRT-PCR analysis. (xlsx 10.8Â KB)
DOI: 10.6084/m9.figshare.c.3646226_d3
title: Additional file 1: Table S1. of Comparative transcriptome analysis of wheat embryo and endosperm responses to ABA and H2O2 stresses during seed germination

description: Complete list of normalized expression values obtained from three biological replicates based on independently treated plant materials. Each horizontal row represents an individual probe set; information of every probe set are represented in vertical columns, including the corresponding functional group of every probe set and their normalized expression values (ABA/H2O2 vs CK in different tissues). (xlsx 5.77Â MB)
DOI: 10.6084/m9.figshare.c.3646226_d1
title: Additional file 2: Table S2. of Comparative transcriptome analysis of wheat embryo and endosperm responses to ABA and H2O2 stresses during seed germination

description: The list of significant differentially expressed genes under ABA and H2O2 treatment respectively in the different tissues (embryo and endosperm). ABA vs CK_embryo: ABA_embryo compared to CK_embryo; H2O2 vs CK_embryo: H2O2_embryo compared to CK_ embryo; ABA vs CK_endosperm: ABA_endosperm vs CK_endosperm; H2O2 vs CK_endosperm: H2O2 _endosperm compared to CK_endosperm. (xls 728Â KB)
DOI: 10.34740/kaggle/dsv/10185031
title: llms.txt
DOI: 10.6084/m9.figshare.c.3645770_d4
title: MOESM4 of Live and inactivated Salmonella enterica serovar Typhimurium stimulate similar but distinct transcriptome profiles in bovine macrophages and dendritic cells

description: Additional file 4. Differentially expressed gene lists. Four Excel sheets listing the genes exhibiting differential expression compared to unstimulated cells in DC infected with live S. Typhimurium (DC_L), DC stimulated with inactivated S. Typhimurium (DC_D), Mø infected with live S. Typhimurium (Mø_L) and Mø stimulated with inactivated S. Typhimurium (Mø_D) (FDR ≤ 5%, fold change ≥ 1.8). Genes shown in bold are represented by more than one probe-set. The fold increases and decreases are highlighted in orange and green respectively. Where possible the HGNC gene names and symbols have been used. Transcribed locus denotes an unannotated transcript and their position on the bovine genome relative to neighbouring genes is described.
DOI: 10.6084/m9.figshare.c.3645770_d1
title: MOESM5 of Live and inactivated Salmonella enterica serovar Typhimurium stimulate similar but distinct transcriptome profiles in bovine macrophages and dendritic cells

description: Additional file 5. An Excel sheet listing the genes forming a common transcriptional response in DC and Mø in response to live and inactivated S. Typhimurium (FDR ≤ 5%, fold change ≥ 1.8). The average fold changes compared to unstimulated cells are listed for each sample set; DC infected with live S. Typhimurium (DC_L), DC stimulated with inactivated S. Typhimurium (DC_D), Mø infected with live S. Typhimurium (Mø_L) and Mø stimulated with inactivated S. Typhimurium (Mø_D). Genes shown in bold are represented by more than one probe-set and the average fold change across the probe-sets is listed. Where possible the HGNC gene names and symbols have been used. The list includes five unannotated transcripts and their position on the bovine genome relative to neighbouring genes is described. Fold changes in red highlight where the fold change in DC and/or Mø is more than 1.5-fold different in response to live and inactivated S. Typhimurium.
DOI: 10.6084/m9.figshare.c.3645698_d1
title: Additional file 2: of InteMAP: Integrated metagenomic assembly pipeline for NGS short reads

description: Supplemental file 1. This file is in xls format and records the information of the 113 species selected to generate the dataset sim-113sp. (XLS 26 kb)
DOI: 10.6084/m9.figshare.c.3644636_d3
title: Additional file 4: of No diurnal variation of classical and candidate biomarkers of Alzheimerâ  s disease in CSF

description: Raw data. (XLSX 28Â kb)
DOI: 10.6084/m9.figshare.c.3644603_d2
title: Additional file 1: of Mortality rates and the causes of death related to diabetes mellitus in Shanghai Songjiang District: an 11-year retrospective analysis of death certificates

description: Dataset. This Excel dataset was used for all the analysis of the present study. (XLS 602 kb)
DOI: 10.6084/m9.figshare.c.3644540_d2
title: Additional file 1: Tables S1â  S13. of Whole genome sequence analysis of serum amino acid levels

description: (XLSX 195 kb)
DOI: 10.6084/m9.figshare.c.3644555_d1
title: Additional file 1: of Phase I/II dose-finding study of nanoparticle albumin-bound paclitaxel (nabÂŽ-Paclitaxel) plus Cisplatin as Treatment for Metastatic Nasopharyngeal Carcinoma

description: Raw data that supports the conclusion. (XLS 763Â kb)
DOI: 10.6084/m9.figshare.c.3643733_d2
title: Additional file 3: Table S3. of A method for identifying discriminative isoform-specific peptides for clinical proteomics application

description: Pathway analysis for Study II (XLS 34 kb)
DOI: 10.15468/dl.ftk8xq
title: Occurrence Download

description: A dataset containing 1649 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Woodsia mollis (Kaulf.) J.Sm."
 ]
}

 The dataset includes 1649 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032612-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3643733_d1
title: Additional file 4: Table S4. of A method for identifying discriminative isoform-specific peptides for clinical proteomics application

description: Pathway analysis for Study III (XLS 34 kb)
DOI: 10.6084/m9.figshare.c.3643724_d2
title: Additional file 3: of Dietary specialization drives multiple independent losses and gains in the bitter taste gene repertoire of Laurasiatherian Mammals

description: Excel file Supplementary_Table_S2. (XLSX 19.2 kb)
DOI: 10.6084/m9.figshare.c.3643232_d7
title: Additional file 2: of Characterization and comparative profiling of the small RNA transcriptomes in two phases of flowering in Cymbidium ensifolium

description: The conserved miRNA family among all of the species.
DOI: 10.6084/m9.figshare.c.3643232_d8
title: Additional file 4: of Characterization and comparative profiling of the small RNA transcriptomes in two phases of flowering in Cymbidium ensifolium

description: The expression of the novel miRNA in four libraries from two flowering phases.
DOI: 10.6084/m9.figshare.c.3643232_d6
title: Additional file 1: of Characterization and comparative profiling of the small RNA transcriptomes in two phases of flowering in Cymbidium ensifolium

description: Real-time quantitative PCR primer sequences for candidate miRNAs.
DOI: 10.6084/m9.figshare.c.3643232_d4
title: Additional file 8: of Characterization and comparative profiling of the small RNA transcriptomes in two phases of flowering in Cymbidium ensifolium

description: Gene ontology (GO) enrichment of the target genes. The genes were targeted by differently expressed miRNA between two floral development phases in C. ensifolium.
DOI: 10.6084/m9.figshare.c.3643232_d5
title: Additional file 9: of Characterization and comparative profiling of the small RNA transcriptomes in two phases of flowering in Cymbidium ensifolium

description: The KEGG pathway enrichment of the target genes. The genes were targeted by differently expressed miRNA between two floral development phases in C. ensifolium.
DOI: 10.6084/m9.figshare.c.3643232_d1
title: Additional file 5: of Characterization and comparative profiling of the small RNA transcriptomes in two phases of flowering in Cymbidium ensifolium

description: Annotation of unigenes targeted by miRNA.
DOI: 10.6084/m9.figshare.c.3643232_d2
title: Additional file 6: of Characterization and comparative profiling of the small RNA transcriptomes in two phases of flowering in Cymbidium ensifolium

description: The comparison of seven differentially expressed miRNA between RT-qPCR and RNA-seq.
DOI: 10.6084/m9.figshare.c.3643202_d10
title: Additional file 10 of Multivariate models from RNA-Seq SNVs yield candidate molecular targets for biomarker discovery: SNV-DA

description: Breast: gene expression model. (CSV 15.1 kb)
DOI: 10.6084/m9.figshare.c.3643202_d9
title: Additional file 1 of Multivariate models from RNA-Seq SNVs yield candidate molecular targets for biomarker discovery: SNV-DA

description: NSCLC: Nonsynonymous Exonic SNV model. (CSV 49.1 kb)
DOI: 10.15468/dl.bqwrc5
title: Occurrence Download

description: A dataset containing 1649 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Woodsia mollis (Kaulf.) J.Sm."
 ]
}

 The dataset includes 1649 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032613-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3642818_d5
title: Additional file 4: Table S4. of Microarray analysis of Long non-coding RNA expression profiles in human gastric cells and tissues with Helicobacter pylori Infection

description: KEGG Pathway analysis of aberrantly expressed mRNAs. (XLSX 32Â kb)