cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15084713
title: Dataset for the publication entitled "Obtaining carotenoid encapsulates with polysaccharides carriers after pilot scale accelerated solvent extraction and ultrasound-assisted extraction from industrial tomato by-product"

description: This study aimed to develop carotenoid and antioxidant-rich encapsulates by spray drying from industrial tomato by-products to enhance their techno-functional properties by using green extraction techniques at a pilot plant scale. Tomato pomace by-products (peels and seeds) can be a source of functional ingredients for the industry since they are nutritionally valuable compounds, mainly carotenoids. Ultrasound assisted extraction (USAE) and accelerated solvent extraction (ASE) can be highlighted as green techniques to extract key bioactive compounds. Encapsulation of biocompounds by polysaccharides as carries (maltodextrin, inulin and a mix of both (1:1)) and spray drying has been described as a good strategy to develop innovative functional foods. Comparative analyses were conducted to evaluate the nutritional value, carotenoid content, total phenolic content (TPC), total antioxidant capacity (TAC), and techno-functional properties of the extracts, and encapsulates.
DOI: 10.5281/zenodo.15084714
title: Dataset for the publication entitled "Obtaining carotenoid encapsulates with polysaccharides carriers after pilot scale accelerated solvent extraction and ultrasound-assisted extraction from industrial tomato by-product"

description: This study aimed to develop carotenoid and antioxidant-rich encapsulates by spray drying from industrial tomato by-products to enhance their techno-functional properties by using green extraction techniques at a pilot plant scale. Tomato pomace by-products (peels and seeds) can be a source of functional ingredients for the industry since they are nutritionally valuable compounds, mainly carotenoids. Ultrasound assisted extraction (USAE) and accelerated solvent extraction (ASE) can be highlighted as green techniques to extract key bioactive compounds. Encapsulation of biocompounds by polysaccharides as carries (maltodextrin, inulin and a mix of both (1:1)) and spray drying has been described as a good strategy to develop innovative functional foods. Comparative analyses were conducted to evaluate the nutritional value, carotenoid content, total phenolic content (TPC), total antioxidant capacity (TAC), and techno-functional properties of the extracts, and encapsulates.
DOI: 10.5281/zenodo.15123778
title: Decoding the Role of Adaptive Hints and the Moderating Role of Mindsets in Concept Map Learning

description: This study examines the impact of adaptive hints and learner mindsets on concept map learning. 

Experiment 1 used a between-subjects design with three conditions: non-adaptive hints, cognitive-adaptive hints, and integrative-adaptive hints. Experiment 2 used a 2 (cognitive-adaptive vs. integrative-adaptive hints) × 2 (growth vs. fixed mindsets) design.
DOI: 10.5281/zenodo.15123779
title: Decoding the Role of Adaptive Hints and the Moderating Role of Mindsets in Concept Map Learning

description: This study examines the impact of adaptive hints and learner mindsets on concept map learning. 

Experiment 1 used a between-subjects design with three conditions: non-adaptive hints, cognitive-adaptive hints, and integrative-adaptive hints. Experiment 2 used a 2 (cognitive-adaptive vs. integrative-adaptive hints) × 2 (growth vs. fixed mindsets) design.
DOI: 10.17632/kg4pbn89df.1
title: Gendered Vulnerabilities to Climate Change in Coastal Areas of Java: The Case Study of Pekalongan

description: The data shows that climate change in Pekalongan's coastal regions adversely influences the socio-economic conditions of the community, disproportionately heightening the vulnerability of women in the family, community, and labor environment. The data was gathered in the form of primary and secondary data. Primary data was obtained through in-depth interviews, while secondary data was collected through scientific journal searches.
DOI: 10.17632/5r682v8mp5.1
title: Calcium and magnesium concentrations in the forest floor and topsoil on the Loess Plateau

description: This dataset contains concentrations of Ca and Mg in the forest floor and topsoil (mg/g) across the Loess Plateau, as well as environmental variables.
DOI: 10.17632/y59rzdj83j.1
title: Identification and molecular mechanism of novel ACE inhibitory peptides from goat milk protein A combined in silico and in vitro study

description: Fig.1 General description of the proteolytic system of goat milk and the distribution of bioactive peptide species based on online simulation. (A)The enrichment ability of different enzymatic hydrolysis systems to inhibit the function of ACE peptides. (B, C) Distribution of bioactive peptide species after enzymatic hydrolysis of casein and whey proteins. 
Fig.2 Study of the screening of conditions and components of goat milk proteolysis. (A-D) Optimal digestion conditions for casein in proteinase K and papain. (E-H) Optimal digestion conditions for whey proteins in proteinase K and papain. (I, K) Effect of enzyme addition sequence on the degree of protein hydrolysis and ACEI rate in goat milk. (J, L) Distribution of ACEI rates for different components, casein and whey proteins. 
Fig.3 The 19 potential ACEI peptides were virtually screened from 698 active peptides. (A) The distribution of 698 active peptides. (B) Potential ACEI peptides were virtually screened by PeptideRanker, and CDocker. (C) Molecular weight, logarithmic value of peptide identification score and intensity by LC-MS/MS, and source distribution of enzymatic hydrolysis of 224 potential ACEI peptides. (D) Molecular weight, sequence, logarithmic value of peptide identification score by LC-MS/MS, and source distribution of potential ACEI peptides for 19 of the 698 peptides. 
Fig.4 Underlying molecular mechanisms of identified peptides from goat milk against ACE revealed by molecular docking. (A-I) Three-dimensional and two-dimensional diagrams of FKF (A), FRY (B), MPFPK (C), RWL (D), WFK (E), WKP (F), VPP (G), IPP (H), and lisinopril (I) binding to ACE, respectively. (J) The statistics of non-bonded interaction types of ligands (FKF, FRY, MPFPK, RWL, WFK, WKP, VPP, IPP, and lisinopril) interacting with ACE. (K) Heatmap analysis of the number of conventional hydrogen bonds interacting with ACE (S1, S2, S1’, and Zn (II) are the core residues of active sites with ACE). Numerical values indicate the quality and number of conventional hydrogen bonds interactions with active pockets in ACE.
Fig.5 Changes in systolic blood pressure (SBP) in spontaneously hypertensive rats after administration of Saline Solution (A), Captopril (5 mg/kg ip, B) or synthetic peptides (100 mg/kg ip): FKF (C) and FRY (D).
DOI: 10.15468/dl.b4mtmd
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paradombeya burmanica Stapf"
 ]
}

 The dataset includes 37 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011796-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25430/researchdata.cab.unipd.it.00001539
title: Headwater streams control the non-perennial fraction of the global river network - DATA

description: This repository contains the data collected for 12 catchments located in Italy and the Eastern USA. These basins are: Biois, Fuciade, Montecalvello, Upper Biois, Turbolo and Valfredda in Italy, and Coweeta, Fernow, Hubbard Brook (2), Poverty and South Fork Potts. These data are stored in the "1 - Catchments" folder. The shapefiles used to obtain the river network for Italy and the Eastern USA are stored in the folder "2 - Macroregions", and are ment to be adopted on the RiverATLAS database. The "readme.txt" contains further information on the content of each folder.
DOI: 10.17632/4vn35twm9v.1
title: Upper-Gastrointestinal Tract Metabolic Profile Regulates Glycaemic and Satiety Responses to Meals with Contrasting Structure : A Pilot Study

description: Original data used in the manuscript entitled" Upper-Gastrointestinal Tract Metabolic Profile Regulates Glycaemic and Satiety Responses to Meals with Contrasting Structure : A Pilot Study " submitted to Nature Metabolism
DOI: 10.17632/ds392fdrdk.1
title: self-sacrificial leadership

description: This study aims to examine the impact of self-sacrificial leadership on employee organizational citizenship behavior (OCB) in hospitality, including the mediating role of emulation and the moderating role of employee traditionality.
DOI: 10.17632/8kbfb8jt45.1
title: Fe isotope of sulfides in the Aguas Zarcas (CM2) chondrite: implication for the history of the protoplanetary disks and parent asteroids

description: All data sheets in a text-based numerical format associated with the manuscript titled "Fe isotope of sulfides in the Aguas Zarcas (CM2) chondrite: implication for the history of the protoplanetary disks and parent asteroids".
DOI: 10.17632/8kbfb8jt45.2
title: Fe isotope of sulfides in the Aguas Zarcas (CM2) chondrite: implication for the history of the protoplanetary disks and parent asteroids

description: All data sheets in a text-based numerical format associated with the manuscript titled "Fe isotope of sulfides in the Aguas Zarcas (CM2) chondrite: implication for the history of and parent asteroids".
DOI: 10.17632/8kbfb8jt45.3
title: Fe isotopes in metals and sulfides in the Aguas Zarcas (CM2) chondrite: implication for the history of the parent asteroids

description: All data sheets in a text-based numerical format associated with the manuscript titled "Fe isotopes in metals and sulfides in the Aguas Zarcas (CM2) chondrite: implication for the history of the parent asteroids".
DOI: 10.17632/8kbfb8jt45.4
title: Fe isotopes in metals and sulfides in the Aguas Zarcas (CM2) chondrite: implication for the history of the parent asteroids

description: All data sheets in a text-based numerical format associated with the manuscript titled "Fe isotopes in metals and sulfides in the Aguas Zarcas (CM2) chondrite: implication for the history of the parent asteroids".
DOI: 10.17632/8kbfb8jt45.5
title: Fe isotopes in metals and sulfides in the Aguas Zarcas (CM2) chondrite: implication for the history of the parent asteroids

description: All data sheets in a text-based numerical format associated with the manuscript titled "Fe isotopes in metals and sulfides in the Aguas Zarcas (CM2) chondrite: implication for the history of the parent asteroids".
DOI: 10.17632/mcn4x2kmwn.1
title: Materials for "Downward Terrestrial Gamma-ray Flash Associated with Collision of Lightning Leaders"

description: # Materials for "Downward Terrestrial Gamma-ray Flash Associated with Collision of Lightning Leaders"

## About

This data repository contains data and materials used for Wada et al. "Downward Terrestrial Gamma-ray Flash Associated with Collision of Lightning Leaders", Science Advances (2025). If you have any questions or comments, please contact the corresponding author of the paper.

## Datasets

This dataset includes
- Gamma-ray data
- Radio-frequency data
- Optical images

Data are provided in the CSV, NPZ, or PNG format. NPZ is a data format readable with Python. Please see "readme.txt" in figure3 for detail.

## Contact
Yuuki Wada (Graduate School of Engineering, Osaka University) 
wada (at) yuuki-wd.space
DOI: 10.17632/nv3nh3yyrp
title: Seasonal variations of hydraulic exchange between surface water and groundwater in an alluvial plain setting using 222Rn

description: These are radon isotope measurements from the main stream and tributary sampling sites
DOI: 10.17632/nv3nh3yyrp.1
title: Seasonal variations of hydraulic exchange between surface water and groundwater in an alluvial plain setting using 222Rn

description: These are radon isotope measurements from the main stream and tributary sampling sites
DOI: 10.5281/zenodo.15124272
title: GFvoter Supplementary Files

description: GFvoter Supplementary Files

This directory contains supplementary materials for the manuscript “Detection of Gene Fusions in Long-Read Transcriptome Sequencing Data with GFvoter”, including the commands used to run the tools and the resulting outputs. Below is a description of each file:

Files

run_command.txt



This file contains the exact commands used to run GFvoter and other fusion detection tools.

It ensures reproducibility by specifying the parameters and options used in the experiments.


Results of GFvoter.zip



This archive contains the output results generated by GFvoter.

It includes fusion detection results, along with scoring vectors that indicate how each method contributed to the final fusion calls.


Results of Others.zip



This archive contains the output results of other fusion detection tools used in the study.

The results are provided for comparison with GFvoter.


realdata_ground_truth.txt



Ground truth fusion events for real RNA sequencing datasets.

Used to evaluate the accuracy of GFvoter and other fusion detection tools on real-world data.

Downloaded from https://github.com/Oshlack/JAFFA/blob/master/known_fusions.txt


simulatedata_ground_truth.txt



Ground truth fusion events for simulated RNA sequencing datasets.


Notes



All results are provided in their original format as generated by the respective tools.

To facilitate further analysis, users can refer to the provided commands in run_command.txt to replicate the results.

If there are any issues with the files, please contact yutingsdu@163.com   renzitong66@163.com.
DOI: 10.5281/zenodo.15124273
title: GFvoter Supplementary Files

description: GFvoter Supplementary Files

This directory contains supplementary materials for the manuscript “Detection of Gene Fusions in Long-Read Transcriptome Sequencing Data with GFvoter”, including the commands used to run the tools and the resulting outputs. Below is a description of each file:

Files

run_command.txt



This file contains the exact commands used to run GFvoter and other fusion detection tools.

It ensures reproducibility by specifying the parameters and options used in the experiments.


Results of GFvoter.zip



This archive contains the output results generated by GFvoter.

It includes fusion detection results, along with scoring vectors that indicate how each method contributed to the final fusion calls.


Results of Others.zip



This archive contains the output results of other fusion detection tools used in the study.

The results are provided for comparison with GFvoter.


realdata_ground_truth.txt



Ground truth fusion events for real RNA sequencing datasets.

Used to evaluate the accuracy of GFvoter and other fusion detection tools on real-world data.

Downloaded from https://github.com/Oshlack/JAFFA/blob/master/known_fusions.txt


simulatedata_ground_truth.txt



Ground truth fusion events for simulated RNA sequencing datasets.


Notes



All results are provided in their original format as generated by the respective tools.

To facilitate further analysis, users can refer to the provided commands in run_command.txt to replicate the results.

If there are any issues with the files, please contact yutingsdu@163.com   renzitong66@163.com.
DOI: 10.15468/dl.bjm7jf
title: Occurrence Download

description: A dataset containing 1250 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Acanthogammaridae"
 ]
}

 The dataset includes 1250 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011798-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/0pxbay
title: Inter_participants_IAP_valsalva.tab

description: :unav
DOI: 10.57745/aikbef
title: Inter_participants_IAP_coughing.tab

description: :unav
DOI: 10.57745/ghhdgy
title: 0_README.pdf

description: :unav
DOI: 10.57745/mdv1jn
title: IAP_breathing.tab

description: :unav
DOI: 10.57745/qbdr8b
title: 0_README.md

description: :unav
DOI: 10.57745/swwp2e
title: 0_README.pdf

description: :unav
DOI: 10.57745/turzuh
title: IAP_valsalva.tab

description: :unav
DOI: 10.57745/xkkz09
title: IAP_coughing.tab

description: :unav
DOI: 10.57745/zi3y8e
title: Inter_participants_IAP_breathing.tab

description: :unav
DOI: 10.15468/dl.jsxm5q
title: Occurrence Download

description: A dataset containing 98105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lymantria dispar Linnaeus, 1758"
 ]
}

 The dataset includes 98105 records from 601 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011785-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh1120422.10fu
title: SH1120422.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1120424.10fu
title: SH1120424.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1120425.10fu
title: SH1120425.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1120426.10fu
title: SH1120426.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1120427.10fu
title: SH1120427.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1120429.10fu
title: SH1120429.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.