cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/prfxg9cbrx
title: RKPM2D: An Open-Source Implementation of Nodally Integrated Reproducing Kernel Particle Method for Solving Partial Differential Equations

description: The implemented RKPM2D program is a two-dimensional RKPM-based code developed for the static analysis of two-dimensional linear elasticity problems. The code is developed based on Reproducing Kernel Particle Method (RKPM) with the following features. (1) User-friendly MATLAB program for straightforward meshfree analysis and easy implementation and modification for new functionalities. (2) Subroutine for discretization of two-dimensional domains of arbitrary geometry and nodal representative domain creation through Voronoi diagram partitioning. (3) A complete meshfree Galerkin equation solver with two types of domain integration: stabilized nodal integration, and conventional background Gauss integration. (4) Built-in visualization tools for post-processing of the numerical results. The RKPM2D code is implemented under a MATLAB environment with pre-processing, solver, and post-processing functions fully integrated for supporting reproducible research and serving as an efficient test platform for further development of meshfree methods. Both the MATLAB built-in mesh generator and standard neutral files exported by other mesh generators can be used to obtain the point-based domain discretization for meshfree analysis. A meshfree Galerkin equation solver for 2-dimensional elastostatics, and visualization tools for post-processing are provided. Nitsche’s method is adopted for imposition of essential boundary conditions. Spatial domain integration techniques implemented in the code include the Gauss Integration (GI), the Direct Nodal Integration (DNI), and the Stabilized Conforming Nodal Integration (SCNI). For nodal integration, two different types of stabilization methods are implemented in RKPM2D, including the Modified Stabilized Conforming Nodal Integration (MSCNI) and the Naturally Stabilized Nodal Integration (NSNI).
DOI: 10.17632/rd2cwzb3cy
title: Women’s political rights in Afghanistan after the fall of the Taliban regime

description: The data contains references used in this research using the Mendeley style, including data in the analysis process and literature studies.
This research purely uses secondary data from previous research that is relevant to ours, such as journal articles, e-books, official websites, and international news.
DOI: 10.17632/fwg2m5sfyf
title: F_HB_Econ_Model_Housing

description: Replication files for the article: "Government expenditure and the housing puzzle: Unpacking mechanisms" by Javier Ferri and Francisca Herranz-Baez
DOI: 10.6084/m9.figshare.24188892.v1
title: Global ERA5 monthly averaged reanalysis Tmax data on single levels from 1940 to 2022 (0.25 degree)

description: Global ERA5 monthly averaged reanalysis Tmax data on single levels from 1940 to 2022 (0.25 degree)Please cite
DOI: 10.6084/m9.figshare.24262339.v1
title: Full-length sequence of plasmids used in Y Sato and MT Hayashi, "Micronucleus is not a potent inducer of cGAS-STING pathway".

description: For cloning of the Sister-Control (SC) cassette plasmid (pMTH857) used for genomic integration, synthetic DNA fragments (Integrated DNA Technologies) were introduced into the original sister cassette plasmid (pMTH397)(Kagaya et al, 2020). A loxP sequence and two roxP sequences were inserted in downstream of a 5’ exon of mCitrine/mCerulean3 and neoR-franking regions, respectively, for potential future experiments. LentiCRISPR.v2 (addgene #52961) was mutagenized to introduce R691A to generate HiFi Cas9. pCAG-enAsCas12a-HF1(E174R/N282A/S542R/K548R)-NLS(nuc)-3xHA (addgene #107942) was used to obtain Lenti-enAsCas12a-HF1-2C-NLS, during which one more NLS was added to the C-terminus to improve its efficiency(Liu et al, 2019). LentiGuide-puro (addgene #52963) and an improved sgRNA scaffold sequence from pKLV2-U6gRNA5(Empty)-PGKBFP2AGFP-W (addgene #67979) were used to generate LentiGuide-puro-sgFUSION21-C+5bp plasmid. pH2B-miRFP703 (addgene #80001) and pCSII-EF-mVenus-hGeminin(1/110) (RDB15271) were used to generate pCSII-EF-emiRFP703-Geminin(1-110), during which the N-terminal sequence of miRFP703 was modified to obtain emiRFP703(Matlashov et al, 2020). An improved rtTA3G was artificially synthesized (Integrated DNA Technologies) to obtain pLenti-rtTA3G(Zhou et al, 2006). pCW-Cas9 (addgene #50661) was modified to generate pTRE3G-miRFP670nano-p2a-Cas9(HiFi), during which the puroR-t2a-rtTA sequence was removed. miRFP670nano was artificially synthesized (Integrated DNA Technologies)(Oliinyk et al, 2019). Mutagenesis on Cas9 and cGAS was performed by conventional PCR followed by HiFi DNA Assembly (NEB) or In-Fusion cloning (Takara Bio).
DOI: 10.6084/m9.figshare.28666520.v3
title: Ethology

description: The data is for the submitted manuscript about coffee concentration-dependent enhancement and sleep deprivation recovery in <i>Drosophila melanogaster</i> (fruit fly).
DOI: 10.17632/298y366ybd
title: Petrology and Au-PGE investigation  dataset of the recent alluvial sediments from the Ngaye River watershed, northern Cameroon

description: The aim of these data is the petrological characterization and the Au-PGE (Platinum Group Elements) investigation of the modern alluvial sediments from the Ngaye River, in semi arid tropical region of the northern Cameroon, Central Africa.
DOI: 10.6084/m9.figshare.14305370.v1
title: Hematological, clinical and epidemiological aspects of Hepatozoon canis infection by parasitological detection in dogs from the rural area of Sousa, Paraíba, Brazil

description: ABSTRACT: Hepatozoonosis is caused by protozoa of the genus Hepatozoon. In dogs, the infection is caused mainly by Hepatozoon canis, and there are a few descriptions of the prevalence of this infection in the Northeast region of Brazil, especially in the semi-arid region. Therefore, we aimed to determine the prevalence of Hepatozoon canis infection in dogs in the rural area of Sousa, Paraíba, Brazil, as well as to determine the possible clinical and epidemiological aspects of this infection. Ninety-eight dogs in the rural zone of the municipality of Sousa that were at least 4 months old were evaluated, regardless of their breed or gender. Clinical examinations were carried out, and samples of systemic and peripheral blood were collected to determine the presence of the parasite in blood smears and carry out hemograms. In addition, epidemiological questionnaires about animal health and food management were completed. The prevalence of H. canis infections in dogs was 8.1% (8/98). There were three main changes in the hematological status: thrombocytopenia, anemia and hyperproteinemia, mainly related to percentage of leukocyte infection ≥5%, and also to the presence of clinical signs such as mucopurulent secretion, lymphadenomegaly, dry skin, pale mucous membranes, and lean or cachectic body score.
DOI: 10.6084/m9.figshare.19514338.v1
title: P19 dataset for Raindrop

description: The authors are: Xiang Zhang, Marko Zeman, Theodoros Tsiligkaridis, Marinka Zitnik
DOI: 10.6084/m9.figshare.20512518.v2
title: Transecto agroecológico en el Río Chili de Arequipa

description: Transecto agroecolgico en el rio Chili
DOI: 10.6084/m9.figshare.21262665.v1
title: PhalydDB, A massive phage-derived lytic protein database for enzybiotics design and bacterial host prediction

description: 4,594, 16,453, and 108,967 phage nucleotide sequences from three separate sources (INPHARED, phage genomes from Millardlab and GPD & MGV) were comprehensively evaluated for the construction of Phage Lysin-associated Domain and Bacterial Host Prediction Database (PhalydDB). PhalydDB comprises 130,014 phage genomes with 198,558 phage lytic proteins.<br>
DOI: 10.17632/559n9zbb7c
title: FN-MNIST

description: The Fixational Neuromorphic MNIST dataset is an event-based version of the full MNIST benchmark, where bio-inspired fixational drift movements have been used to drive the camera. Training and test data are provided as separate ZIP archives and each data sample (binary file) contained therein can be loaded using the utility function from the given Python file.
DOI: 10.17632/gxr3j4tdk5
title: Ten dictionaries for Arabic language

description: In this data set you can find the roots and derivations words for the ten well known Arabic dictionaries.
DOI: 10.17632/yvpk7bh7bh
title: Supplementary File: Exploring the Intersection of Food Literacy and Consumer Research

description: This file provides the evidence for and validates the outcomes of the study "Exploring the Intersection of Food Literacy and Consumer Research: A Review, Conceptualisation, and Agenda for Sustainability-Focused Research."
DOI: 10.6084/m9.figshare.1207997.v3
title: LinkTW and LinkTWM Programs for computing Linking numbers, Twist and Writhe for cyclic annulenes.

description: Higher twisted (Möbius) annulenes can be characterised by topological invariants such as the linking number Lk and related by the Cãlugãreanu/Fuller theorem to twist and writhe by the expression Lk = Tw + Wr Programs to compute these properties are available here. The source codes are LinkTW.cpp and LinkTWM.cpp. The former code should be used for systems with an even linking number and the latter for systems with an odd linking number. The file Calculus.cpp, is also needed.
DOI: 10.17632/5v8934hwgw
title: Supplemental Data for JAAD-D-23-00657R2

description: Supplemental data for JAAD-D-23-00657
Kasperkiewicz et al, Risk of comorbid autoimmune diseases in patients with immunobullous disorders: A global large-scale cohort study, Journal of the American Academy of Dermatology
DOI: 10.17632/hdr6dd5xv2
title: High-speed trains derived from Annex E / EN 1991-2

description: This new version of dataset "doi: 10.17632/hdr6dd5xv2.1" is intended to fix an error detected in the definition of the "conventional trains" contained in such previous dataset. The error arising from a bug in a computer code, was detected in Feb 2023. Therefore, while in the present version the conventional trains have been updated, the "articulated" and "regular" ones remain unchanged.

The dataset contains 3759 realizations of axle load sequences corresponding to potential high-speed trains (conventional, articulated, regular) which comply with the prescriptions in Annex E / Eurocode EN 1991-2, Actions on structures - Part 2: Traffic loads on bridges. Therefore, the dataset describes potential sources of dynamic excitation for bridges, falling within the range of application of EN 1991-2 for high-speed lines.

Annex E in EN 1991-2 establishes the conditions that a sequence of train loads ought to fulfil to respect the limits of validity of load model HSLM-A. Consequently, this dataset represents a (dense) ensemble of trains defined under the range of validity currently associated to HLSM-A. Such conditions are described in the attached “Characteristics of the high-speed trains derived from Annex E (EN1991-2).pdf”. 

Four types of traction are considered: (1) distributed traction (this one not used for regular trains); (2) power cars with wheelbases equal to HSLM-A; (3) power cars with wheelbases equal to RENFE S103 (a Siemens unit); (4) power cars with wheelbases equal to RENFE S112 (Talgo Avril).

One condition stipulated in Annex E / EN 1991-2 is not respected in this dataset: the requirement that wheelbase ratios D/dBA and (dBS-dBA)/dBA should not be close to integers. This deliberate omission is assumed following publications where it is demonstrated that the vibratory effects produced by these integer wheelbase ratios are not significantly larger than the effects from other ratios far from being integer. Indeed, a number of current high-speed vehicles feature integer or near-integer wheelbase ratios, as reported in [3] below (references follow): [1] P. Museros et al. Dynamic behaviour of bridges under critical articulated trains: Signature and bogie factor applied to the review of some regulations included in EN 1991-2. PI Mech Eng F-J Rai, 2021; 235(5):655-675; [2] P. Museros et al. Dynamic effect of trains with articulated coaches and Jacobs bogies with integer wheelbase ratios. XI Int Conf on Struc Dyn EURODYN 2020; 2646-2657; [3] P. Museros et al. Dynamic behaviour of bridges under critical conventional and regular trains: review of some regulations included in EN 1991-2. PI Mech Eng F-J Rai, 2022 (submitted).

When the HSLM-A model was devised, its creators envisaged that certain types of potential vehicles ought to be considered in designing railway bridges for future high-speed lines. Such types were summarised in Annex E from EN 1991-2. This dataset comprehensively covers the trains loads that can be defined from such regulations.
DOI: 10.17632/jvm3fhpjwn
title: Remapping and realignment in the human hippocampal formation predict context-dependent spatial behavior

description: Subject- and trial-level MATLAB source data for figures associated with Julian & Doeller (2021, "Remapping and realignment in the human hippocampal formation predict context-dependent spatial behavior," Nat Neurosci; SourceData directory). Also provided are the 3D models used in the virtual-reality environment for the behavioral task (3D_objects_for_behavioral_Task directory).
DOI: 10.17632/tjtcftj3cf
title: eIF2B localisation and its regulation during the ISR is cell-type specific

description: Original western blot data
DOI: 10.6084/m9.figshare.29064362.v1
title: data

description: data
DOI: 10.17632/g6fkdm53jr
title: LINF_180016700

description: Ras-related protein Rab5A; Leishmania infantum (strain JPCM5)
DOI: 10.17632/hk7chvgfzk
title: Dataset for Classifying Spices

description: In this Dataset, a total of 4,003 spice samples were collected from nine spice categories across
various locations in Bangladesh, including grocery stores, homes, and other sources. The spices
were carefully documented and categorized to create a comprehensive dataset for accurate
classification. The distribution of spice samples is as follows:
• Star Anise: 404 samples
• Red Chili: 460 samples
• Onion: 462 samples
• Indian Bay Leaf: 481 samples
• Green Chili: 432 samples
• Ginger: 412 samples
• Garlic: 599 samples
• Cinnamon: 468 samples
• Cardamom: 285 samples

After augmentation a total of 20,015 spice samples, the distribution of spice samples is as follows:
• Star Anise: 2020 samples
• Red Chili: 2300 samples
• Onion: 2310 samples
• Indian Bay Leaf: 2405 samples
• Green Chili: 2160 samples
• Ginger: 2060 samples
• Garlic: 2995 samples
• Cinnamon: 2340 samples
• Cardamom: 1425 samples
DOI: 10.17632/jhyrrgj5b6
title: Dangerous situation detection

description: Dataset containing two folders with one containing dangerous objects of various classes - blood, alcohol, guns, knives, cigarrete, insulting gestures. The second folder contains images of different emotions ranging from sad, happy, angry as distressed and surprised and neutral as un-distressed.
DOI: 10.17632/24ys9czvjc
title: Data for: Phylogenetic relationships and systematics of the Amazonian poison frog genus Ameerega using ultraconserved genomic elements

description: Supplemental data for the manuscript "Phylogenetic relationships and systematics of the Amazonian poison frog genus Ameerega using ultraconserved genomic elements". Contains per-locus alignments, tree files, and instructional code.
DOI: 10.17632/fp4njbzdwt
title: figshare

description: The data supporting the findings of this study are available within the paper and its Supplementary Information. Datasets generated and/or analyzed in the current study are provided as separate Source Data for figs1,2,3,4,5,6.Extended Supplementary Figs and Other source data like all staining figures and chocardiography figures related to the study are available from the corresponding author upon reasonable request
DOI: 10.6084/m9.figshare.7808021.v1
title: Additional file 3.ab1

description: Sanger sequencing trace with indel
DOI: 10.6084/m9.figshare.9276428.v1
title: Genetic diversity of long-established populations of Elaeis guineensis jacquin (Arecaceae)

description: Abstract This study aimed to estimate the genetic diversity of three Elaeis guineensis populations in Rio Grande do Norte state, as well as to verify the decreases in effective population size. The population with the highest polymorphism was MAT (Mata) with+ 57 loci (72%), followed by RIA (Riacho) with 54 loci (68%) and HOR (Horta) with 34 loci (43.03%). The RIA population was shown to be the most genetically diverse, with Nei (h = 0.28) and Shannon (I = 0.41) diversity indices. There was high genetic differentiation among populations (AMOVA, analysis of molecular variance = 42%), which was separated into three distinct genetic groups according to a Bayesian analysis. There was a significant population decrease (P &lt; 0.05) for the HOR population in the IAM (infinite allele model) and SMM (stepwise mutation model), and for the RIA population in the IAM. The data obtained in this study may support ex-situ conservation projects for Elaeis guineensis, contributing to the selection of genotypes and their sustainable use.
DOI: 10.17632/3cfrj4vd4m
title: Norwegian Sign Language

description: The dataset used in our research is a self-made NSL fingerspelling dataset containing 24 300 across 27 alphabets. Each alphabet has 600 images taken of a male where ½ of it is with basic white background and the other ½ is of complex background. Each alphabet also has 300 images taken of a female with a basic white background. We want this dataset to be available to the public so further research can be made in the field of NSL recognition.
DOI: 10.17632/pstyw59hw2
title: Effect of biochar addition on soil active nitrogen fractions

description: We carried out a field experiment on BC addition in abandoned grasslands on the Loess Plateau to elucidate the effects of BC application on soil active N fractions (e.g., DON, MBN, NH4+-N, and NO3--N) and soil properties (e.g., physicochemical properties, microbial biomass, and related enzyme activities, etc.) in the abandoned grasslands on the Loess Plateau. We hypothesized that (1) BC addition could significantly facilitate the accumulation of soil active N fractions, but excessive addition of BC might reduce this facilitation, and (2) BC addition led to significant variations in the soil factors that influence the characteristics of accumulation and transformation of soil AON and DIN fractions.
Soil water content (SWC) and temperature (ST) were determined in situ by the drying differential method and thermometer (JM624, Jinming Instrument Co., Tianjin, China), respectively (Xie et al., 2024). SOC and dissolved organic carbon (DOC) were determined through the K2Cr2O7 oxidation method, while TN and TP were determined by the Kjeldahl method and molybdenum antimony colorimetric method, respectively (Liu et al., 2022; Cao et al., 2023). In addition, NH4+-N, NO3--N, and dissolved total nitrogen (DTN) were determined by KCl solution leaching-Kjeldahl nitrogen determination and UV spectrophotometry, respectively (Zhang et al., 2022b; Chen et al., 2024a). DON was the difference between the DTN and the contents of NH4+-N and NO3--N. Microbial biomass carbon (MBC) and MBN were determined by chloroform fumigation-K2SO4 extraction, and microbial biomass phosphorus (MBP) was determined by chloroform fumigation-NaHCO3 extraction (Zhang et al., 2022b; Mao et al., 2024). Urease (Ure) was determined by the urease colorimetric method (Ren et al., 2016), and β-1,4-N-acetylglucosaminidase (NAG) was determined by the p-nitrophenol colorimetric method of Liu et al. (Liu et al., 2023).
DOI: 10.17632/w6pf6f8rwh
title: Dataset of Singapore's power market in 2019

description: This dataset contains data from 2019.01.01 to 2019.12.31 of Singapore’s power market. It consists of the following data:
1. Real-time electricity price
2. Power load
3. Holiday type
4. Day type
5. Hour
DOI: 10.6084/m9.figshare.14234123.v1
title: 2017-2019 Patch-burn grazing pollinator study, southwest North Dakota

description: 144 bee transects sampled 3x per season. All bees within 1 m of transect touching reproductive parts of flowers were captured, killed, labeled. All flowering stems within 1 m of transect were counted at the end of each bee sampling.65 ha pastures divided into four burn units. 1/4 of each pasture burned in 2016, 2017, 2018.<br>Processing is minimal, just data cleaning. Tab "TransYR.bees.flowers" is data summed for each transect-year (i.e., transect 1- year 2017 = 1.2017). Columns ACHMIL through VICAME for both tabs are number of flowering stems with 1 m of transect by species. TimeSinceFire categories are: unburned, 0 = burned previous fall, 1 = burned one-year before data collection, 2 = burned 2 years before data collection. Flower in "bee_obvs" tab is which flower the bee was caught on. Honey bees are exlcuded from bee total and bee species richness columns.
DOI: 10.6084/m9.figshare.3205552.v1
title: fMRI to intraneural microstimulation of single mechanoreceptive afferents

description: fMRI raw time series acquired during intranerual microstimulation (INMS) of single mechanoreceptive units (11 datasets, named U1_INMS.nii.gz etc..). fMRI raw time series acquired during vibrotactile stimulation to the corresponding unit's receptive field (U1_vibrotactile.nii.gz etc ...). Structural whole head MRI scans for 4 participants for which fMRI data was acquired. Full description of the type of mechanoreceptive units stimulated during fMRI per subject, paradigm used, etc .. can be found in the following paper: Sanchez Panchuelo RM, Ackerley R, Glover PM, Bowtell RW, Westberg J, Francis ST & McGlone F, "Mapping quantal touch using 7 Tesla functional magnetic resonance imaging and single-unit intraneural microstimulation" eLife, 2016;10.7554/eLife.12812.
DOI: 10.6084/m9.figshare.5539648.v1
title: <b>β</b>-nerve growth factor identification in male rabbit genital tract and seminal plasma and its role in ovulation induction in rabbit does

description: The neurotrophin β-nerve growth factor (NGF) has been described as an important mediator of seminal plasma-induced ovulation in reflexive ovulators like camelids, but this action has not been evidenced in rabbits. In this study, the mRNA expression of NGF was analysed in rabbit male organs by PCR and in a purified basic fraction of seminal plasma by liquid chromatography mass spectrometry. Besides, the ovulatory response [ovulation rate (OR), corpora lutea number, LH peak and progesterone profile] of 27 rabbit does was recorded after injection with murine NGF, gonadoreline (GnRH) or saline solution (SS). An empty catheter was introduced through the vagina (<i>n</i> = 4 animals per group) to simulate the nervous/mechanical stimulus of coitus. Molecular studies confirmed the expression of β-NGF mRNA in the prostate, seminal gland and testicles of male adult rabbits, and the presence of the protein in seminal plasma. For the <i>in vivo</i> experiment, all GnRH-group does exhibited a significantly higher OR (100%) compared to females treated with NGF (30%) and SS (25%), who showed significantly lower LH and progesterone concentrations at 120 min. However, in the non-vaginally stimulated animals, only the gonadoreline group ovulated properly, since no ovulation was recorded in the SS group, and only 17% of the NGF does ovulated; this was associated to a tendency to a higher rate of anovulatory haemorrhagic follicles. mRNA expression of NGF and its presence in seminal plasma evidence a role in rabbit reproduction. Nevertheless, murine NGF triggered some stimulatory effect in the females but not enough to elicit a significant ovulatory response.
DOI: 10.6084/m9.figshare.7286231.v2
title: Gzipped predicted coding gene translated sequences (protein fasta) for Sinella curviseta

description: Gzipped predicted coding gene translated sequences (protein fasta)