cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/bgxfwsg3sb
title: A comprehensive analysis and resource to use CRISPR-Cas13 for broad-spectrum targeting of RNA viruses. Lin et al.

description: The COVID-19 pandemic caused by SARS-CoV-2 and variants has led to significant mortality. We recently reported that an RNA-targeting CRISPR-Cas13 system, termed prophylactic antiviral CRISPR in human (PAC-MAN), offered an antiviral strategy against SARS-CoV-2 and influenza A virus. Here, we expand in silico analysis to use PAC-MAN to target a broad spectrum of human- or livestock-infectious RNA viruses with high specificity, coverage, and predicted efficiency. Our analysis reveals that a minimal set of 14 crRNAs is able to target &gt;90% of human-infectious viruses across 10 RNA virus families. We predict that a set of 5 experimentally validated crRNAs can target new SARS-CoV-2 variant sequences with 0 mismatches. We also build an online resource (crispr-pacman.stanford.edu) to support community use of CRISPR-Cas13 for broad-spectrum RNA virus targeting. Our work provides a new bioinformatic resource for using CRISPR-Cas13 to target diverse RNA viruses in order to facilitate development of CRISPR-based antivirals.
DOI: 10.17632/8532xrbkhk
title: Trihelota, a new and unusual helotid beetle genus from mid-Cretaceous Burmese amber (Coleoptera: Helotidae)
DOI: 10.17632/hk2zgmtsk6
title: LINF_070016400

description: MIP18-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/j948jp2r5f
title: ADSB_Data

description: Data used for calculating cosines similarity between aircraft ADSB broadcast messages
Also, for calculating message rate by different measures
Dataset is a zip file containing a sqlite3 database
DOI: 10.17632/7jdndrxbp3
title: Dataset of aerosol samples collected at NOTOGRO, Japan (the database for the report "Sources of aeolian magnetite at a remote site in Japan: Dominantly Asian desert dust or anthropogenic emissions?")

description: Material: Coarse aerosol samples (Dp &gt; 2.5 µm) were collected at the NOTO Ground-based Research Observatory (NOTOGRO, 37.45°N, 137.36°E), located in a remote area of the Noto Peninsula, Japan, from August 2014 to March 2016. Sampling was performed weekly using a quartz fiber filter (QR-100, ADVANTEC, Tokyo, Japan), a high-volume air sampler (AH-600F, SIBATA, Tokyo, Japan), and a PM2.5 classifier (SIBATA, Tokyo, Japan) at a flow rate of 700 L/min on the roof of the third floor. 
Magnetic analytical data: One of five strips of a quartz filter was cut out, and the magnetization measured using a pulse magnetizer (PM9, Magnetic Measurements, Lancashire, UK) and a SQUID magnetometer (750, 2G Enterprises, California, USA).
Chemical analytical data: Sequential dissolution of aerosol samples was performed to identify aerosol sources. Some of five strips of a quartz filter were treated with 5% acetic acid (12 h) and the extraction was then defined as the HOAc-soluble fraction. On the other hand, the residue which was defined as the HOAc-insoluble fraction, was completely dissolved in a mixture of HNO3-HF-HCL. After column separation, the major and trace elements for each fraction and Pb isotopes were analyzed using ICP-MS (7500cx, Agilent Technologies, California, USA) and a double-focusing multicollector ICP-MS (NEPTUNE, Thermo Fisher Scientific, Massachusetts, USA), respectively. Pb isotopes of blank filters were analyzed only for the HOAc-insoluble fraction.
*Details: Please refer to our report (https://doi.org/10.1016/j.atmosenv.2023.120093).
DOI: 10.17632/kwwvh8xjy8
title: Data for: Oxfordian carbon-isotope stratigraphy and pelagic biofacies of the Middle–Upper Jurassic transition in the Tethys–Central Atlantic connection
DOI: 10.17632/sd88yf37r2
title: PCR screening of miRNA in AIONFH cases and health control

description: MiRCURY LNATM Universal RT microRNA PCR Panels is utlized to analyze the spectra of miRNAs in serum samples from AIONFH patients and applied the random variance model (RVM) t-test to filter the differentially expressed miRNAs. The distinguishable miRNA expression profiles among AIONFH patients and healthy controls were demonstrated by the results of hierarchical clustering. Initial analysis revealed 10 miRNAs that were differentially expressed. Seven miRNAs (miR-127-3p, miR-1, miR-654-3p, miR-628-3p, miR-432-5p, miR-582-3p, and miR-323a-3p) were found to be significantly downregulated (P&lt;0.01), while three miRNAs (miR-483-5p, miR-483-3p, and miR-885-5p) were markedly upregulated (P&lt;0.01)
DOI: 10.17632/3nv5hcvy45
title: Econometric Analysis of GDP and Income Inequality in Greece: A Diachronic Study Across Pre-Crisis, Crisis, and Post-Crisis Periods

description: This study examines the relationship between GDP and income inequality in Greece across three key periods: pre-crisis (2003-2008), crisis (2009-2014), and post-crisis (2015-2020). The data, sourced from the World Bank, includes annual GDP figures and Gini coefficient measurements. The hypotheses tested whether economic growth increased inequality before the crisis, whether the financial downturn exacerbated inequality, and whether post-crisis GDP recovery improved income distribution.

Findings reveal that in the pre-crisis period, while GDP grew steadily, income inequality also increased moderately, suggesting uneven distribution of economic gains. During the crisis, GDP contracted sharply, and income inequality worsened significantly due to austerity measures, high unemployment, and reduced social protections. In the post-crisis period, despite some economic recovery, inequality remained high, indicating that structural issues, such as unemployment and weak social mobility, continued to prevent significant reductions in inequality.

The data suggest that while economic growth is important, it is insufficient by itself to reduce income inequality without targeted policies. The findings highlight the need for comprehensive reforms, including progressive taxation, stronger social safety nets, and inclusive economic growth policies to address persistent inequality in Greece.
DOI: 10.17632/x3m9mwbczb
title: Data for: Intersegmental strategies in frontal plane in moderately-skilled riders analyzed in ridden and un-mounted situations

description: See description in file.
DOI: 10.17632/4mjf2gbgh6
title: LINF_050006100

description: S-adenosyl-L-methionine-dependent methyltransferase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/fwss4fjd83
title: GAM-phython

description: Biogeochemical parameters significantly correlated with Chl a in U. prolifera were extracted and tested for their ability to explain the temporal patterns of biogeochemical parameters observed during the green tide outbreaks, using a generalized additive model (GAM) and analyzed with PyCharm software.
DOI: 10.17632/rhnrr8cprj
title: Data on USSD Apps in Health Informatics Management in Nigeria: Prospects, Challenges and Intention to Use

description: The datasets contain information on patients’ perception towards the use of Unstructured Supplementary Service Data (USSD) App to improve personal health information exchange. A cross-sectional survey questionnaire consisting of 19 items was administered to 421 outpatients at three tertiary healthcare facilities South East Region of Nigeria including Alex Ekwueme Federal University Teaching Hospital Abakaliki, Ebonyi State, Federal Medical Centre, Owerri, Imo state and Federal Medical Centre, Umuahia, Abia State. The responses were transferred into google form for easy collation, pre-processing and analysis. Data was collected on demographics, application areas, prospects, adoption challenges and patients’ intention to use the USSD App.
DOI: 10.17632/gx57kwjhpp
title: Data for: Instrumental mass fractionation during sulfur isotope analysis by secondary ion mass spectrometry in natural and synthetic glasses

description: Supplementary spreadsheets containing the sulfur isotope data collected from glasses by SIMS (spreadsheet1), a comparison between sulfur contents of the glasses measured by SIMS and EPMA (spreadsheet2), and the starting composition of the experimental glasses used in the study (spreadsheet3). Tables presented in the manuscript are also provided as an excel spreadsheet for easy access.
DOI: 10.17632/t2kzy9tjvj
title: data for the manuscript 'Ab initio density functional theory study of magnesium and sulfate impurities in CaCO3 and their effects on mineral-solution equilibrium isotope fractionations' by Chirantan Pramanik and Itay Halevy

description: DFT and DFPT calculations output files and phonon csv files (using plane wave PBE xc-functional and the PAW pseudopotentials in Quantum ESPRESSO and DFT-B3LYP functional and Pople basis sets in Gaussian) for the manuscript 'Ab initio density functional theory study of magnesium and sulfate impurities in CaCO3 and their effects on mineral-solution equilibrium isotope fractionations' by Chirantan Pramanik and Itay Halevy. Python scripts for partition functions and stable isotope fractionation calculations are also included.
DOI: 10.17632/b3d2p9fzg3
title: Differentially Expressed Features in HEI vs HEU in B-CELL IMMUNITY AND VACCINE INDUCED ANTIBODY PROTECTION REVEAL THE INEFFICACY OF CURRENT VACCINATION SCHEDULE IN INFANTS WITH PERINATAL HIV-INFECTION IN MOZAMBIQUE, AFRICA. by Cotugno N, et Al.

description: All differentially expressed features in children living with HIV compared to HIV exposed uninfected children for the paper entitled: B-CELL IMMUNITY AND VACCINE INDUCED ANTIBODY PROTECTION REVEAL THE INEFFICACY OF CURRENT VACCINATION SCHEDULE IN INFANTS WITH PERINATAL HIV-INFECTION IN MOZAMBIQUE, AFRICA by Cotugno N. et Al.
DOI: 10.17632/yrk4cgnxmp
title: Data for: Two new 2-(2-Phenylethyl)chromone Derivatives from Agarwood of Aquilaria crassna in Cambodia

description: paper
DOI: 10.17632/x4852cs86r
title: Andrades et al 2020 MPB - dataset

description: Isotopic analysis revealed niche shifts in estuarine fishes following a large mining dam disaster in Brazil Andrades et al - Dataset spreadsheet: carbon and nitrogen stable isotopes signatures
DOI: 10.17632/395w99wxg9
title: Data for: Benchmarking Leachate Co-treatment Strategies in Municipal Wastewater Treatment Plants under Dynamic Conditions and Energy Prices

description: Research Data 1 is the modified version of the Benchmark Simulation Model no.1 (Gernaey et al., 2014) dry weather influent file. It includes soluble inert nitrogen (S_NI) component as an input. It is used as a dynamic influent file for municipal wastewater in the study. Research Data 2 is the dynamic influent file for leachate used in the study. It consists Activated Sludge Model no.1 (Henze et al., 2000) based influent characterization of old landfill leachate. The dynamic composition of leachate was generated based on Galleguillos and Vasel (2011). Galleguillos, M., Vasel, J.-L. (2011). Landfill leachate characterization for simulation of biological treatment with Activated Sludge Model No. 1 and Activated Sludge Model No. 3. Environmental Technology 32(11), 1259-1267. Gernaey, K.V., Jepson, U., Vanrolleghem, P.A., Copp, J.B. (2014). Benchmarking of Control Strategies for Wastewater Treatment Plants. Scientific and Technical Report No. 23, IWA Publishing, London, UK. Henze, M., Gujer, W., Mino, T., van Loosedrecht, M. (2000). Activated Sludge Models ASM1, ASM2, ASM2d and ASM3. IWA Publishing, London, UK.
DOI: 10.17632/v4mgvkjt2z
title: You Can't Always Get What You Want (Where You Want It): Cross-Border Effects of the US Money Market Fund Reform

description: Included are the readme file and the codefiles needed to reproduce the empirical results in the paper "You Can't Always Get What You Want (Where You Want It): Cross-Border Effects of the US Money Market Fund Reform" by Daniel Fricke, Stefan Greppmair, and Karol Paludkiewicz, published in the Journal of International Economics. Note: access to the main datasets is restricted and we cannot share the underlying datasets. However, researchers with access to the datasets should be able to reproduce all figures/tables on the basis of the provided codes.
DOI: 10.17632/4mm5w8w99s
title: dataset for the paper "A supply-demand model of the size of public sector and Wagner's law"

description: Data collected from open sources, such as World Bank Development indicators
DOI: 10.17632/b9vrgschzx
title: Dataset of comparative analysis of international/national guidelines and emergency medical services' dispatcher pre-arrival instructions on first aid in drowning

description: This dataset contains results of a structured comparative analysis of provisions of international/national guidelines and emergency medical services' dispatcher pre-arrival instructions on first aid in drowning.
The analysis was carried out in February 2024.
DOI: 10.17632/mvc7pgdhb6
title: Resource Utilization Efficiency from the Perspective of Major Crop Fertilizer Footprint among Chinese Provinces

description: Final results of N footprint of major crops in 31 provinces of China
DOI: 10.17632/rhf73mzx64
title: Effect of camel milk protein hydrolysates against hyperglycemia, hyperlipidemia, and associated oxidative stress in streptozotocin (STZ)-induced diabetic rats

description: Supplementary material for research article published in Journal of Dairy Science. Title of the research article: Effect of camel milk protein hydrolysates against hyperglycemia, hyperlipidemia, and associated oxidative stress in streptozotocin (STZ)-induced diabetic rats.
DOI: 10.17632/k4c432c7c2
title: Analysis of SDOF system

description: Matlab file will generate the response of the input data. One program for solving all the problems in SDOF System. Problems included free damped/undamped, Force damped/undamped. In the output file, it will generate the Displacement Velocity, Acceleration curve corresponding the input data. Input data: Mass, Stiffness, Damping Coefficient, Forcing function Output: Graph of Displacement, Velocity, Acceleration
DOI: 10.17632/xnzwzmhbfs
title: Public Perceptions on Faecal Sludge Biochar and Biosolids Use in Agriculture

description: Public Perceptions on Faecal Sludge Biochar and Biosolids Use in Agriculture - Questionnaire of residents from Swansea
DOI: 10.17632/4txc7hyprd
title: LINF_280009200

description: rrp44p homologue | RPP44
Leishmania infantum (strain JPCM5)
DOI: 10.17632/xd74wbskxg
title: Coding of Data Cleaning and Processing

description: The specific process was mainly implemented through the MySQL database. Some invalid data was removed. The first part of the removed data was incomplete and error data. Because these data could cause mistakes to the results. The second part of removed data was the trip over 60 minutes and 14 kilometers because these trips were considered personal use such as shopping instead of commuting. Finally, this research used a total of 437,053 trip records about public bike systems and 7,051 trip records about bike sharing systems as the dataset.
DOI: 10.17632/cswgkr58y5
title: Sustainability of Mexican Electric System

description: The complete data updated to 2022 of all the generating sources of electrical energy in Mexico, registered in the Energy Information System and the Program for the Development of the National Electrical System (PRODESEN) of the Government of Mexico, are presented. In addition, a code of an optimization process elaborated with Macros in Excel is included, which was used to arrive at the results shown in the article "Possible viable development paths for the Mexican Energy Transition"
DOI: 10.17632/9tn6jy72dh
title: El concurso de cuento como estrategia de aprendizaje de la experiencia humana

description: Proyecto pedagógico
DOI: 10.17632/dj3vskzvmn
title: Data for: Transformation of damped acoustic waves into undamped waves

description: This folder contains (i) The measured experimental data (ii) All the numerical codes used in this paper
DOI: 10.17632/jkx9nm58vm
title: Contolled-coverage discrete S-transform (CC-DST)

description: The S-transform (ST) is a popular linear time-frequency (TF) transform with hybrid characteristics from the short-time Fourier transform (STFT) and the wavelet transform. It enables a multi-resolution TF analysis and returns globally referenced local phase information, but its expensive computational requirements often overshadow its other desirable features. In this paper, we develop a fully discrete ST (DST) with a controllable TF sampling scheme based on a filter-bank interpretation. The presented DST splits the analyzed signal into subband channels whose bandwidths increase progressively in a fully controllable manner, providing a frequency resolution that can be varied and made as high as required, which is a desirable property for processing oscillatory signals lacked by previously presented DSTs. Thanks to its flexible sampling scheme, the behavior of the developed transform in the TF domain can be adjusted easily; with specific parameter settings, for example, it samples the TF domain dyadically, while by choosing different settings, it may act as a STFT. The spectral partitioning is performed through asymmetric raised-cosine windows whose collective amplitude is unitary over the signal spectrum to ensure that the transform is easily and exactly invertible. The proposed DST retains all the appealing properties of the original ST, representing a local image of the Fourier transform; it requires low computational complexity and returns a modest number of TF coefficients. To confirm its effectiveness, the developed transform is utilized for different applications using real-world and synthetic signals.
DOI: 10.6084/m9.figshare.27679275
title: Phase shift document and its visualization algorithms.zip

description: Phase shift document and its visualization algorithms
DOI: 10.6084/m9.figshare.27679275.v1
title: Phase shift document and its visualization algorithms.zip

description: Phase shift document and its visualization algorithms
DOI: 10.6084/m9.figshare.27679281
title: Phase shift and transmission of DOE.zip

description: Phase shift and transmission of DOE
DOI: 10.17632/ktjx6jfsxh
title: Metabarcoding dataset of Obama nungara gut contents

description: Metabarcoding dataset of Obama nungara gut contents
DOI: 10.17632/nyp5c7pncf
title: IMPACT OF ENDURANCE TRAINING ON PEAK EXPIRATORY FLOW RATE AND VO2MAX IN BASKETBALL VERSUS FOOTBALL PLAYERS

description: This study helps to check the impact of 2 weeks of endurance training on PEFR, VO2max in basketball and football players, and compare which of the player had better improvement by comparing Pre and post test. PEFR was assessed with the help of Mini Wright's Peak Flow Meter and VO2max  was assessed by Cooper test.
DOI: 10.6084/m9.figshare.27679281.v1
title: Phase shift and transmission of DOE.zip

description: Phase shift and transmission of DOE
DOI: 10.17632/v8vg2mjjnb
title: LinApart: Optimizing the univariate partial fraction decomposition

description: We present LinApart, a routine designed for efficiently performing the univariate partial fraction decomposition of large symbolic expressions. Our method is based on an explicit closed formula for the decomposition of rational functions with fully factorized denominators. We provide an implementation in the Wolfram Mathematica language, which can lead to very significant performance gains over the built-in Apart command. Furthermore, a C language library implementing the core functionality and suitable for interfacing with other software is also provided. Both codes are made available at https://github.com/fekeshazy/LinApart.
DOI: 10.17632/gxwgm5bdhd
title: Data for: Effects of surfactants (SDS, Triton X-100 and CTAB) on the dewaterability of microalgae biomass using pressure filtration

description: The application of pressure filtration in microalgae harvesting requires chemical treatment in order to reduce membrane fouling and increase water flux. Surfactant has shown potential to enhance microalgae dewaterability by releasing extracellular polymeric substances (EPS). In this study, the effect of three surfactants including anionic sodium dodecyl sulfate (SDS), non-ionic triton X-100 and cationic cetyl trimethyl ammonium bromide (CTAB) on dewaterability of Chlamydomonas sp. was investigated. Filtration fluxes and biomass concentrations were used to evaluate the microalgae dewaterability. Based on the results, SDS and Triton X-100 had negative effect on the dewaterability of microalgae biomass. However, CTAB improved the dewaterability by decreasing negative charge of microalgae biomass. The optimum dosage of CTAB was found to be 1500 mg/L, resulted in 95.8% and 140% improvement on average water flux and biomass concentration, respectively.
DOI: 10.17632/wbsd9v2ztz
title: Method for selecting the optimal technology in metal additive manufacturing using an analytical hierarchical process

description: The research hypothesis of this study revolves around employing Multi-Criteria Decision Analysis (MCDA) techniques, particularly the Analytical Hierarchical Process (AHP), to optimize technology selection in metal additive manufacturing. The data collected and analyzed includes the results of the survey and criteria evaluation relevant to the decision-making process, such as reliability, finishing of the part after printing, complexity of post-processing, sustainability of the process, user preferences, machine price, manufacturing cost, and productivity.
The AHP methodology involves constructing a hierarchy structure wherein the goal or objective, criteria, and alternatives are systematically organized. Pairwise comparisons are then made among criteria and alternatives, using a relative importance scale ranging from 1 to 9. These comparisons are recorded in a positive reciprocal matrix, which is then normalized to obtain numerical weights for decision-making. The priority vector or normalized principal eigenvector is computed, representing the relative importance of criteria, and the maximum eigenvalue is determined. Finally, a global ranking of decision alternatives is analyzed based on additive aggregation and normalization of the sum of local priorities of criteria and alternatives.
DOI: 10.17632/zchwgnd777
title: Antimicrobial sensitivity testing in 3 Ugandan Hospitals

description: Antimicrobial resistance (AMR) is a global health threat responsible for increased hospital costs and mortality. The WHO global action plan on AMR recommends antimicrobial sensitivity testing (AST) and surveillance of antibiotic use to address this threat. We aimed to determine the utility of AST in three Ugandan hospitals. We conducted a cross-sectional study was conducted in three major referral hospitals in Uganda. We used abstraction checklists to collect data on AST requests, AST performed, AST turnaround time, and dispensed antibiotics from in-patient files, lab, and pharmacy records. Antibiotic data were summarized using proportions. The dispensed antibiotics and AST antibiotic-disks were compared using spearman’s rank correlation test. Of the 607 in-patient files reviewed, AST was requested in 24 (4.0%), and done in 13 (2.1%). All three hospitals used the Kirby-Bauer disk diffusion method for AST, with a median turnaround time of 5 days (IQR 4-8). While the frequently used AST antibiotic-disks were cotrimoxazole (13.0%), ampicillin (11.7%), and ceftriaxone (10.5%), the most dispensed antibiotics were metronidazole (30.3%), amoxicillin (19.6%) and ceftriaxone (14.8%). There was a weak correlation (r=0.313, p=0.120) between dispensed antibiotics and AST antibiotic-disks. We report an underutilization of AST, and the few tests that were performed were discordant with the most dispensed antibiotics. The commonly used disk diffusion method in hospitals of resource-limited settings is inexpensive but has a long turnaround time. We recommend alternative faster and cost-effective AST methods.
DOI: 10.17632/6jkzdxxz3j
title: Data for: The influence of syngenetic hydrothermal silica fluid on organic matter preservation in lower Cambrian Niutitang Formation, South China

description: Elemental composition of chert-shale intervals of lower Cambrian source rocks.