cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6617685
title: Establishing trust in quantum computations

description: This is supplemental data and code for: T. Proctor et al., <em>Establishing trust in quantum computations</em><em>, </em>arXiv 2204.07568 (2022). This folder contains all the data and the analysis code to generate the results presented in that paper. The simulation code uses PyGSTi, which can be found at https://github.com/pyGSTio/pyGSTi. The `code_for_release` folder contains all code, and processed data required for reproducing the results presented in the paper. The `data_for_release` folder contains all raw data (this folder is ~70 Gb when uncompressed), which was generated using the code in `code_for_release`. Please direct any questions to Timothy Proctor (tjproct@sandia.gov).
description: SAND2022-7491 O
DOI: 10.5281/zenodo.5197714
title: Scalable Randomized Benchmarking of Quantum Computers using Mirror Circuits

description: This is supplemental data and code for: T. Proctor et al., <em>Scalable randomized benchmarking of quantum computers using mirror circuits, </em>arXiv 2112.09853 (2021). This folder contains all the data and the analysis code to generate the results presented in that paper. The core data analysis routines use PyGSTi, which can be found at https://github.com/pyGSTio/pyGSTi. Please direct any questions to Timothy Proctor (tjproct@sandia.gov).
description: SAND2021-8118 O
DOI: 10.5281/zenodo.5176765
title: Scalable Randomized Benchmarking of Quantum Computers using Mirror Circuits

description: This is supplemental data and code for: T. Proctor et al., <em>Scalable randomized benchmarking of quantum computers using mirror circuits, </em>arXiv 2112.09853 (2021). This folder contains all the data and the analysis code to generate the results presented in that paper. The core data analysis routines use PyGSTi, which can be found at https://github.com/pyGSTio/pyGSTi. Please direct any questions to Timothy Proctor (tjproct@sandia.gov).
description: SAND2021-8118 O
DOI: 10.6084/m9.figshare.19919703.v1
title: How six optometry institutions in the Asia-Pacific region adapted their teachings during the COVID-19 pandemic

description: How six optometry institutions in the Asia-Pacific region adapted their teachings during the COVID-19 pandemic
DOI: 10.6073/pasta/24d1067d9ca1c89813026e4653a38633
title: Seasonal high-frequency measurements of discharge, water temperature, and specific conductivity from House Stream at H2, McMurdo Dry Valleys, Antarctica (1993-2012)

description: As part of the Long Term Ecological Research (LTER) project in the McMurdo Dry Valleys of Antarctica, a systematic sampling program has been undertaken to monitor the glacial meltwater streams in that region. This package contains data pertaining to continuous monitored water quality and quantity parameters measured with automatic recording devices on streams in this region. Specifically, this metadata record describes the hydrology dataset for the McMurdo Dry Valleys' House Stream at the H2 streamgage, located in the Hoare Basin of Taylor Valley. Measurements commenced during the 1993-94 austral summer and continued through the end of the 2011-12 austral summer. The H2 streamgage was removed in December 2012 due to rising lake levels.
DOI: 10.5281/zenodo.6618207
title: Data files for figures in "Characteristics of the two types of Kuroshio large meanders in the Shikoku Basin"

description: Processed data files used to create the figures in the paper "Characteristics of the two types of Kuroshio large meanders in the Shikoku Basin".
DOI: 10.5281/zenodo.6618206
title: Data files for figures in "Characteristics of the two types of Kuroshio large meanders in the Shikoku Basin"

description: Processed data files used to create the figures in the paper "Characteristics of the two types of Kuroshio large meanders in the Shikoku Basin".
DOI: 10.6073/pasta/6edcb2cf2339c0d4fed72db73a3a6e1d
title: Seasonal high-frequency measurements of discharge, water temperature, and specific conductivity from Priscu Stream at B1, McMurdo Dry Valleys, Antarctica (1993-2011)

description: As part of the Long Term Ecological Research (LTER) project in the McMurdo Dry Valleys of Antarctica, a systematic sampling program has been undertaken to monitor the glacial meltwater streams in that region. This package contains data pertaining to continuous monitored water quality and quantity parameters measured with automatic recording devices on streams in this region. Specifically, this metadata record describes the hydrology dataset for the McMurdo Dry Valleys' Priscu Stream at the B1 streamgage, located in the Bonney Basin of Taylor Valley. Measurements commenced during the 1993-94 austral summer and continued through the end of the 2010-11 austral summer. The B1 streamgage was removed in December 2011 due to lake level rise and sedimentation of the control. No replacement site was constructed.
DOI: 10.5281/zenodo.6618130
title: PhytoNodes for Environmental Monitoring: Stimulus Classification based on Natural Plant Signals in an Interactive Energy-efficient Bio-hybrid System

description: Cities worldwide are growing, putting bigger populations at risk due to urban pollution. Environmental monitoring is essential and requires a major paradigm shift. We need green and inexpensive means of measuring at high sensor densities and with high user acceptance. We propose using phytosensing: using natural living plants as sensors. In plant experiments we gather electrophysiological data with sensor nodes. We expose the plant <em>Zamioculcas zamiifolia</em> to five different stimuli: wind, temperature, blue light, red light, or no stimulus. Using that data we train ten different types of artificial neural networks to classify measured time series according to the respective stimulus. We achieve good accuracy and succeed in running trained classifying artificial neural networks online on the microcontroller of our small energy-efficient sensor node. To indicate later possible use cases, we showcase the system by sending a notification to a smartphone application once our continuous signal analysis detects a given stimulus. Data repository for our paper "PhytoNodes for Environmental Monitoring: Stimulus Classification based on<br> Natural Plant Signals in an Interactive Energy-efficient Bio-hybrid System", submitted to the GoodIT conference. Please refer to the paper for more information. <strong>Contents of this repository</strong> <em>mu_interface:</em> Code for our data collection plant experiments, based on Raspberry Pis and the Cybertronica phytosensing and phytoactuating system. <em>raw_data: </em>The datasets from our plant experiments for the stimuli wind, temperature, red light, blue light, and no stimulus. <em>dl-4-tsc:</em> Deep learning framework developed by Fawaz et. al (Deep learning for time series classification: a review) and adapted to our use case. Find the training and testing datasets in the archives folder as well as the trained classifiers in the results folder. <em>classification_results.ods: </em>Overview of the results from the deep learning framework (accuracy, precision, recall, training time). <em>TFLite_Models: </em>The trained classifiers in TensorFlow Lite Format. <em>00_AI_BLE_MeasuringOnlyWind: </em>Source code for classification on STM-based PhytoNodes (using MCDCNN two-class classifier) and Bluetooth communication. The code is written for the STM32WB55 Nucleo board and can be transferred to the dongle. <em>zavrsniProjekt_iOS: </em>Source code of the iOS app used to receive data from the STM-based PhytoNodes. <em>Watchplant_application_documentation.pdf: </em>Instructions to build and use the iOS app.
DOI: 10.6073/pasta/ce476d27d8edcd0c63918516285650cd
title: Seasonal high-frequency measurements of discharge, water temperature, and specific conductivity from Santa Fe Stream at B2, McMurdo Dry Valleys, Antarctica (1993-2000)

description: As part of the Long Term Ecological Research (LTER) project in the McMurdo Dry Valleys of Antarctica, a systematic sampling program has been undertaken to monitor the glacial meltwater streams in that region. This package contains data pertaining to continuous monitored water quality and quantity parameters measured with automatic recording devices on streams in this region. Specifically, this metadata record describes the hydrology dataset for the McMurdo Dry Valleys' Santa Fe Stream at the B2 streamgage, located in the Bonney Basin of Taylor Valley. Measurements commenced during the 1993-94 austral summer and continued through the end of the 1999-20 austral summer. The B2 streamgage was removed in December 2000 after it was found completely underwater due to Lake Bonney water level rise. Efforts were made to continue some discrete flow measurements to estimate flow in Santa Fe Stream based on the flow record at the higher elevation streamgage located in nearby Lawson Creek. Thus, Santa Fe Stream transitioned from being continuously monitored to one for which discrete measurements of flow may be made during site visits to Lawson Creek.
DOI: 10.5281/zenodo.6618222
title: Do Carefully-timed Email Messages Increase Accuracy and Precision in Citizen Scientists' Reports of Events?

description: Periodic messages are a commonly used tactic for reminding citizen science program participants to take a desired action such as collecting observations. In this study, we evaluate the impact of such messages on the accuracy and precision of observations contributed to <em>Nature’s Notebook</em>, a citizen science phenology observing program. To encourage participants in <em>Nature’s Notebook</em> to log the timing of leaf-out and flowering with maximum accuracy and precision, we email observers three days prior to when the events were expected to occur based on forecast models. Unplanned interruptions to the scripts driving these email prompts allowed us to evaluate whether the messages had the intended impacts.
DOI: 10.5281/zenodo.5165317
title: Do Carefully-timed Email Messages Increase Accuracy and Precision in Citizen Scientists' Reports of Events?

description: Periodic messages are a commonly used tactic for reminding citizen science program participants to take a desired action such as collecting observations. In this study, we evaluate the impact of such messages on the accuracy and precision of observations contributed to <em>Nature’s Notebook</em>, a citizen science phenology observing program. To encourage participants in <em>Nature’s Notebook</em> to log the timing of leaf-out and flowering with maximum accuracy and precision, we email observers three days prior to when the events were expected to occur based on forecast models. Unplanned interruptions to the scripts driving these email prompts allowed us to evaluate whether the messages had the intended impacts.
DOI: 10.15151/esrf-es-813456665
title: FInnish National Protein Crystallography Consortium

description: The Finnish BAG encompasses 25 groups active in crystallography in Finland. The projects vary widely and include membrane proteins such as membrane pyrophosphatases, and various protein complexes and receptors (growth factor receptors, integrins), signaling proteins such as kinases, other proteins involved in disease and antibiotics development (neuronal adhesion and myelin proteins, PP2A, ADP-ribosylation and biocatalytic enzymes) and several pathogen proteins (e.g. viral proteins) and various enzyme targets and e.g. studies on phytochrome photoreceptors and complexes involved in actin and cytoskeleton dynamics and regulation. Overall the BAG serves the national needs for highly variable projects, with different biological and biotechnological applications. Several project will benefit from microfocus beam lines and tunable wavelength options for phasing, others benefit from quick robust screening by MASSIF. Biology lab is needed for SAXS experiments.
DOI: 10.6073/pasta/da3e82602f603ce9528bae274b6b6626
title: Surface and porewater chemistry and sulfur stable isotpes for alpine and subalpine wetland sites, 2021.

description: To understand patterns in aqueous biogeochemistry of wetlands at Niwot Ridge, samples were collected and analyzed for dissolved anions and stable isotopes of sulfur in 2021. Samples were collected from eight wetland sites representing three wetland types, from the Saddle into the subalpine. At each site, tension lysimeters were placed at visible surface inflow and outflow paths to collect porewater. Water samples were collected from the tension lysimeters and surface pools during four time points through the summer season. Water samples were measured for a suite of dissolved anions using ion chromatography, including dissolved chloride, nitrate, and sulfate. Samples were also measured for dissolved organic carbon. Sulfur from one surface water sample from each site at each time point was precipitated as barium sulfate, and precipitations were analyzed for stable sulfur isotope ratio (δ^34S-SO4^2-) at the Center for Stable Isotope Biogeochemistry at the University of California, Berkeley. Data was used in conjunction with soil biogeochemistry data from 2020 to evaluate patterns in reactants among wetland types.
DOI: 10.6084/m9.figshare.20010251.v1
title: Concave-up bathymetry - mixed mud and sand.zip

description: model setups that are used to study the influence of antecedent morphology on development of equilibrium bathymetry in estuaries past and future
DOI: 10.6084/m9.figshare.20010251
title: Concave-up bathymetry - mixed mud and sand.zip

description: model setups that are used to study the influence of antecedent morphology on development of equilibrium bathymetry in estuaries past and future
DOI: 10.25919/qdpg-k557
title: Parkes observations for project P1054 semester 2022APRS_07

description: With this proposal we ask time to continue our timing follow-up campaign of pulsars discovered with the MeerKAT telescope. Fourteen sources have been discovered in targeted observations of Fermi unidentified point sources, three in the Small Magellanic Cloud, 37 in Globular Clusters and 34 in a survey of the Galactic plane. A large fraction of the new discoveries are recycled pulsars (including at least one double neutron star system and several 'spider' binaries), or young pulsars. Timing observations have an essential role in exploiting the full potential of any pulsar discovery, allowing the precise measurement of rotational, astrometric and orbital parameters which, in turn, give us powerful tools to improve our understanding of the physics in extreme environments as well as of the population of neutron stars as a whole. The UWL receiver of the Parkes telescope is a sensitive, versatile instrument that is allowing us to successfully time these new sources, in the bright-end of TRAPUM discoveries. The UWL has also the unique advantage of allowing detailed studies of the eclipses of the so-called 'spider' pulsars, which make up about 1/3rd of the sources we aim at following-up with this project.
DOI: 10.6084/m9.figshare.20010278
title: model setups.zip

description: Model setups that are used to study the influence of antecedent morphology on development of equilibrium bathymetry in estuaries past and future
DOI: 10.6084/m9.figshare.20010278.v1
title: model setups.zip

description: Model setups that are used to study the influence of antecedent morphology on development of equilibrium bathymetry in estuaries past and future
DOI: 10.26188/20000513
title: UNIMELB_SILAPUREM-Likitha_VYT-LOCAL-2022.mp4

description: This presentation is an overview of my PhD thesis on developing and evaluating the impact of a positive psychology intervention called job crafting, on improving employee engagement and wellbeing in the workplace. I have created this presentation as a part of the 2022 Visualise Your Thesis competition.
DOI: 10.26188/20000513.v1
title: UNIMELB_SILAPUREM-Likitha_VYT-LOCAL-2022.mp4

description: This presentation is an overview of my PhD thesis on developing and evaluating the impact of a positive psychology intervention called job crafting, on improving employee engagement and wellbeing in the workplace. I have created this presentation as a part of the 2022 Visualise Your Thesis competition.
DOI: 10.6073/pasta/e762f2a7940d6c112f8a03d1eb25917c
title: Snowbed experiment species composition and hobo data for Niwot Ridge, 2012 - ongoing.

description: Niwot Ridge climate records indicate a trend of warmer spring and summer temperatures and earlier timing of snowmelt. In alpine tundra plant communities where snow cover limits growing season length, the current climatic trend is conducive to a longer growing season. The snowbed experiment was established in order to monitor changes in plant cover and community composition in the alpine tundra in response to extended summer growing season conditions. Of particular interest are late-melting snowbed areas where plant colonization and survival are most restricted or entirely prevented by a limited number of snow-free days with the sunlight and temperature necessary for plant establishment and growth. In 2012, fifteen 1 x 1 m plots were established at 5 sites where there are persistent, late-melting snowbeds. Plots were placed along (1) an elevation gradient and (2) a snow-cover gradient from persistent snowbeds, where snowpack is greatest and melt-out dates latest in the season, to wind-scoured dry meadows, where snow pack is least and melt-out dates earliest. In 2015 the one site was dropped from the experiment because the snowbed there was quite different from the other four.
DOI: 10.6084/m9.figshare.20010281.v1
title: model setups.zip

description: Model setups that are used to study the influence of antecedent morphology on development of equilibrium bathymetry in estuaries past and future.
DOI: 10.6084/m9.figshare.20010281
title: model setups.zip

description: Model setups that are used to study the influence of antecedent morphology on development of equilibrium bathymetry in estuaries past and future.
DOI: 10.6084/m9.figshare.20010287
title: model setups .zip

description: Model setups that are used to study the influence of antecedent morphology on development of equilibrium bathymetry in estuaries past and future.
DOI: 10.6084/m9.figshare.20010287.v1
title: model setups .zip

description: Model setups that are used to study the influence of antecedent morphology on development of equilibrium bathymetry in estuaries past and future.
DOI: 10.6084/m9.figshare.17698631
title: Microbial dispersal in the subseafloor

description: Additional files, including the contigs, anvi’o protein calls, Prodigal protein calls, and anvi’o database profiles for the MAGs. Along with Dataset files. <br> Supplemental Data Legend <strong>Supplemental Data S1.</strong> MAG quality values with details on relationship to original Tully \textit{et al.} (2018) MAGs. <br> <strong>Supplemental Data S2.</strong> MAG RPKM values in all time points of interest using variable identity cutoffs in the BamM step. Each MAG is also assessed for the number of samples it is "present" in using different RPKM cutoff values. <br> <strong>Supplemental Data S3.</strong> MAG values for total SNVs, length, SNV per kbp, nucleotide diversity, and T:P ratio. <br> <strong>Supplemental Data S4.</strong> inStrain results for each genome by time point of interest. <br> <strong>Supplemental Data S5.</strong> The set of inStrain linkage.csv and SNVs.tsv used to calculated linkage disequilibrium. <br> <strong>Supplemental Data S6.</strong> For each MAG, the genes that were determined to have variable coverage across time points. Gene IDs and coverage values determined from anvi'o output. Top two BLAST matches in the NR database are provided for each gene and KEGG assignment (when available). <br> <strong>Supplemental Data S7.</strong> For each MAG, genes determined to be have statistically significant differences in nucleotide diversity, as a proxy for putative genes that have undergone a selective sweep. Significance determined by Welch's t-test. Mean dN/dS was determined from Gretel results. <br> <strong>Supplemental Data S8.</strong> Output for the Gretel analysis. There is a directory for each gene from each MAG with the raw Gretel results. <br> <strong>Supplemental Data S9.</strong> Output for the PAML analysis There is a directory for each gene from each MAG based on the Gretel results. <strong>Supplemental Data S10.</strong> Reports the population mean FST values for genes that met cutoff criteria. Calculated in a pairwise manner between time points of interest. Reports the genes and region number when 5+ genes were detected with mean FST &gt;1 standard deviation above the genome mean. Reports the genes and region number when 5+ genes were detected with mean FST &gt;2 standard deviation above the genome mean. When relevant includes corresponding data from Supplemental Data 7. Performed in a pairwise manner between time points of interest. Reports num. of SNV per gene, FST, p, and coverage. <br> <strong>Supplemental Data S11.</strong> Provides information on the KEGG categories of genes determined to have putative selective sweeps.
DOI: 10.6084/m9.figshare.17698631.v1
title: Microbial_populations_subseafloor-PREPRINT

description: Additional files, including the contigs, anvi’o protein calls, Prodigal protein calls, and anvi’o database profiles for the MAGs. Along with Dataset files.
DOI: 10.6084/m9.figshare.17701254
title: Microbial dispersal in the subseafloor-BAMFILES

description: Additional filtered BAM files used in this analysis.
DOI: 10.6084/m9.figshare.17701254.v2
title: Microbial dispersal in the subseafloor-BAMFILES

description: Additional filtered BAM files used in this analysis.
DOI: 10.6084/m9.figshare.17701254.v1
title: Microbial_populations_subseafloor-BAMFILES

description: Additional filtered BAM files used in this analysis.
DOI: 10.17632/y4vt4xhvy7.1
title: Original images for integrated global analysis in rice chilling tolerance divergence

description: The data contains the original figures of phenotype image and DNA gel electrophoresis in this study.
DOI: 10.17632/fm239hdxh9.1
title: Bivalves maintain repair when faced with chronically repeated mechanical stress

description: Shells of the California mussel (Mytilus californianus) provide protection against a lifetime of threats. We experimentally quantified the animal's capacity to repair in response to chronic mechanical stress. Specifically, once a week for approximately seven months, we applied 15 cycles of a compressive load to whole live mussels. At the end of seven months, we compared the shell strength of stressed and non-stressed control mussels. We also compared morphology, growth, evidence of shell damage and repair, soft tissue dry weight, and mortality between groups.

We have uploaded three .csv data files, one .R code file, and one .pdf readme.

CraneDenny_DataReadME.pdf provides further details about each csv and a detailed description of the contents of each column.
CraneDenny_FatigueRepair.csv provides the bulk of the experimental data, reporting all details about all the mussels involved in the primary experiment.
CraneDenny_FatigueCycle.csv provides detailed information about each loading cycle from the weekly compressive loading treatment.
CraneDenny_FieldDamagedShells.csv provides detailed information about damage and repair from a supplementary group of mussels collected from low-shore and high-shore areas.
CraneDenny_FiguresandAnalyses.R provides code to recreate all figures and analyses from the associated manuscript.
DOI: 10.6084/m9.figshare.20001668.v1
title: Efficient Checking of Temporal Compliance Rules Over Business Process Event Logs - Evaluation Dataset (ICPM)

description: This zip contains a Java-commandline tool of the approach described in the article: <br> "Efficient Checking of Temporal Compliance Rules Over Business Process Event Logs" Adriano Augusto, Ahmed Awad, Marlon Dumas
DOI: 10.6084/m9.figshare.20001668
title: Efficient Checking of Temporal Compliance Rules Over Business Process Event Logs - Evaluation Dataset (ICPM)

description: This zip contains a Java-commandline tool of the approach described in the article: <br> "Efficient Checking of Temporal Compliance Rules Over Business Process Event Logs" Adriano Augusto, Ahmed Awad, Marlon Dumas