cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26990218
title: Additional file 16 of Sctensor detects many-to-many cell–cell interactions from single cell RNA-sequencing data

description: Additional file 16. HTML report of HeadandNeckCancer.
DOI: 10.6084/m9.figshare.26990218.v1
title: Additional file 16 of Sctensor detects many-to-many cell–cell interactions from single cell RNA-sequencing data

description: Additional file 16. HTML report of HeadandNeckCancer.
DOI: 10.6084/m9.figshare.26990224
title: Additional file 17 of Sctensor detects many-to-many cell–cell interactions from single cell RNA-sequencing data

description: Additional file 17. HTML report of Uterus.
DOI: 10.6084/m9.figshare.26990224.v1
title: Additional file 17 of Sctensor detects many-to-many cell–cell interactions from single cell RNA-sequencing data

description: Additional file 17. HTML report of Uterus.
DOI: 10.6084/m9.figshare.26990227
title: Additional file 18 of Sctensor detects many-to-many cell–cell interactions from single cell RNA-sequencing data

description: Additional file 18. HTML report of VisualCortex.
DOI: 10.6084/m9.figshare.26990227.v1
title: Additional file 18 of Sctensor detects many-to-many cell–cell interactions from single cell RNA-sequencing data

description: Additional file 18. HTML report of VisualCortex.
DOI: 10.5525/gla.researchdata.1770
title: The Geochronology of Plutonism Associated with the Great Glen Fault, Northern Scottish Highlands – Appendices B and D
DOI: 10.6084/m9.figshare.26990233.v1
title: Additional file 2 of Tillandsia landbeckii phyllosphere and laimosphere as refugia for bacterial life in a hyperarid desert environment

description: Additional file 2: Supplementary tables: Table S1. Information about sample number and sequencing results. Table S2. The complete ASV table with raw read numbers and taxonomic ranking after decontamination. Table S3. The differentially enriched ASVs in phyllosphere and laimosphere assessed by ANCOM-BC analysis.
DOI: 10.6084/m9.figshare.26990233
title: Additional file 2 of Tillandsia landbeckii phyllosphere and laimosphere as refugia for bacterial life in a hyperarid desert environment

description: Additional file 2: Supplementary tables: Table S1. Information about sample number and sequencing results. Table S2. The complete ASV table with raw read numbers and taxonomic ranking after decontamination. Table S3. The differentially enriched ASVs in phyllosphere and laimosphere assessed by ANCOM-BC analysis.
DOI: 10.6084/m9.figshare.26990236
title: Additional file 1 of The expression of the NPR1-dependent defense response pathway genes in Persea americana (Mill.) following infection with Phytophthora cinnamomi

description: Additional file 1: Table S1. Plant proteomes obtained as input for orthologue identification using OrthoFinder v2.5.4. Table S2. Candidate NPR1 pathway-associated genes in Persea americana. Putative functional descriptions are the result of a combined annotation approach by using original functional annotations (Avocado Genome Consortium) and eggNOG-mapper, InterProScan and BLASTp descriptions. Candidates with no expression data, determined using baseMean following DeSeq2 analyses, were not assigned descriptors. Table S3. Protein-protein BLAST of identified Persea americana NPR1-dependent defense response pathway proteins. The NCBI non-redundant protein sequences database was used and limited by entrez entry Viridiplantae with an Expected (E) value cutoff 0.05, word size 3, BLOSUM 62, Gap cost (existence 11, extension 1), max hits per sequence 5. Table S4. Differentially expressed Persea americana NPR1- pathway-associated genes (log2(fold change; log2FC) &gt; 0.58 | &lt; -0.58, adjusted p-value (FDR; p-adj) &lt; 0.05) at various time-points following inoculation of the partially resistant rootstock Dusa® and the susceptible rootstock R0.12 with Phytophthora cinnamomi, compared to a mock-inoculated control. lfcSE - standard error of log2FC. Table S5. Differentially expressed Persea americana NPR1- pathway-associated genes (log2(fold change; log2FC) &gt; 0.58 | &lt; -0.58, adjusted p-value (FDR; p-adj) &lt; 0.05) comparing the expression of uninoculated (Control) sample libraries or various Phytophthora cinnamomi inoculated libraries, of the partially resistant rootstock Dusa® with the respective libraries in the susceptible rootstock R0.12. lfcSE - standard error of log2FC.
DOI: 10.6084/m9.figshare.26990236.v1
title: Additional file 1 of The expression of the NPR1-dependent defense response pathway genes in Persea americana (Mill.) following infection with Phytophthora cinnamomi

description: Additional file 1: Table S1. Plant proteomes obtained as input for orthologue identification using OrthoFinder v2.5.4. Table S2. Candidate NPR1 pathway-associated genes in Persea americana. Putative functional descriptions are the result of a combined annotation approach by using original functional annotations (Avocado Genome Consortium) and eggNOG-mapper, InterProScan and BLASTp descriptions. Candidates with no expression data, determined using baseMean following DeSeq2 analyses, were not assigned descriptors. Table S3. Protein-protein BLAST of identified Persea americana NPR1-dependent defense response pathway proteins. The NCBI non-redundant protein sequences database was used and limited by entrez entry Viridiplantae with an Expected (E) value cutoff 0.05, word size 3, BLOSUM 62, Gap cost (existence 11, extension 1), max hits per sequence 5. Table S4. Differentially expressed Persea americana NPR1- pathway-associated genes (log2(fold change; log2FC) &gt; 0.58 | &lt; -0.58, adjusted p-value (FDR; p-adj) &lt; 0.05) at various time-points following inoculation of the partially resistant rootstock Dusa® and the susceptible rootstock R0.12 with Phytophthora cinnamomi, compared to a mock-inoculated control. lfcSE - standard error of log2FC. Table S5. Differentially expressed Persea americana NPR1- pathway-associated genes (log2(fold change; log2FC) &gt; 0.58 | &lt; -0.58, adjusted p-value (FDR; p-adj) &lt; 0.05) comparing the expression of uninoculated (Control) sample libraries or various Phytophthora cinnamomi inoculated libraries, of the partially resistant rootstock Dusa® with the respective libraries in the susceptible rootstock R0.12. lfcSE - standard error of log2FC.
DOI: 10.6084/m9.figshare.26989894
title: Additional file 14 of Gene expression in notochord and nuclei pulposi: a study of gene families across the chordate phylum

description: Additional file 14: Supplemental file 2. Rgm protein sequences used in Fig. 2, with their respective accession numbers.
DOI: 10.6084/m9.figshare.26990260
title: Additional file 7 of Candidate biomarkers for treatment benefit from sunitinib in patients with advanced renal cell carcinoma using mass spectrometry-based (phospho)proteomics

description: Additional file 7: Table S2. All identified and quantified phosphosites.
DOI: 10.6084/m9.figshare.26990260.v1
title: Additional file 7 of Candidate biomarkers for treatment benefit from sunitinib in patients with advanced renal cell carcinoma using mass spectrometry-based (phospho)proteomics

description: Additional file 7: Table S2. All identified and quantified phosphosites.
DOI: 10.6084/m9.figshare.26990263.v1
title: Additional file 8 of Candidate biomarkers for treatment benefit from sunitinib in patients with advanced renal cell carcinoma using mass spectrometry-based (phospho)proteomics

description: Additional file 8: Table S3. All identified and quantified phosphopeptides and proteins.
DOI: 10.6084/m9.figshare.26990263
title: Additional file 8 of Candidate biomarkers for treatment benefit from sunitinib in patients with advanced renal cell carcinoma using mass spectrometry-based (phospho)proteomics

description: Additional file 8: Table S3. All identified and quantified phosphopeptides and proteins.
DOI: 10.6084/m9.figshare.26990299
title: Additional file 2 of Deep transcriptome profiling reveals limited conservation of A-to-I RNA editing in Xenopus

description: Additional file 2. Expression values of ADAR1, ADAR2, and ADAR3 in all analyzed samples.
DOI: 10.6084/m9.figshare.26990299.v1
title: Additional file 2 of Deep transcriptome profiling reveals limited conservation of A-to-I RNA editing in Xenopus

description: Additional file 2. Expression values of ADAR1, ADAR2, and ADAR3 in all analyzed samples.
DOI: 10.6084/m9.figshare.26990302.v1
title: Additional file 3 of Deep transcriptome profiling reveals limited conservation of A-to-I RNA editing in Xenopus

description: Additional file 3. Protein-coding sites that are conserved between X. laevis and X. tropicalis.
DOI: 10.6084/m9.figshare.26990305
title: Additional file 4 of Deep transcriptome profiling reveals limited conservation of A-to-I RNA editing in Xenopus

description: Additional file 4. Conserved mammalian sites that are also edited in Xenopus.
DOI: 10.6084/m9.figshare.26990302
title: Additional file 3 of Deep transcriptome profiling reveals limited conservation of A-to-I RNA editing in Xenopus

description: Additional file 3. Protein-coding sites that are conserved between X. laevis and X. tropicalis.
DOI: 10.6084/m9.figshare.26990305.v1
title: Additional file 4 of Deep transcriptome profiling reveals limited conservation of A-to-I RNA editing in Xenopus

description: Additional file 4. Conserved mammalian sites that are also edited in Xenopus.
DOI: 10.6084/m9.figshare.26990308
title: Additional file 5 of Deep transcriptome profiling reveals limited conservation of A-to-I RNA editing in Xenopus

description: Additional file 5. Human coding sites that are also edited in Xenopus.
DOI: 10.6084/m9.figshare.26990308.v1
title: Additional file 5 of Deep transcriptome profiling reveals limited conservation of A-to-I RNA editing in Xenopus

description: Additional file 5. Human coding sites that are also edited in Xenopus.
DOI: 10.6084/m9.figshare.26990317
title: Additional file 3 of Structural and non-coding variants increase the diagnostic yield of clinical whole genome sequencing for rare diseases

description: Additional file 3. Supplementary Tables S1-S9.
DOI: 10.6084/m9.figshare.26990317.v1
title: Additional file 3 of Structural and non-coding variants increase the diagnostic yield of clinical whole genome sequencing for rare diseases

description: Additional file 3. Supplementary Tables S1-S9.
DOI: 10.6084/m9.figshare.26990323
title: Additional file 2 of Chromosome-level genome assembly of the deep-sea snail Phymorhynchus buccinoides provides insights into the adaptation to the cold seep habitat

description: Additional file 2: Table S15a. GO enrichment of unique gene families in P. buccinoides compared with seven other molluscan species. Related to Figure 2c. Table S15b. KEGG enrichment of unique gene families in P. buccinoides compared with seven other molluscan species. Related to Figure 2c.
DOI: 10.6084/m9.figshare.26990323.v1
title: Additional file 2 of Chromosome-level genome assembly of the deep-sea snail Phymorhynchus buccinoides provides insights into the adaptation to the cold seep habitat

description: Additional file 2: Table S15a. GO enrichment of unique gene families in P. buccinoides compared with seven other molluscan species. Related to Figure 2c. Table S15b. KEGG enrichment of unique gene families in P. buccinoides compared with seven other molluscan species. Related to Figure 2c.
DOI: 10.6084/m9.figshare.26990326
title: Additional file 3 of Chromosome-level genome assembly of the deep-sea snail Phymorhynchus buccinoides provides insights into the adaptation to the cold seep habitat

description: Additional file 3: Table S16a. Enriched GO terms of expanded genes in the deep-sea gastropod P. buccinoides compared to shallow sea L. gigantea. Related to Figure 3. Table S16b. Enriched KEGG pathways of expanded genes in the deep-sea gastropod P. buccinoides compared to shallow sea L. gigantea. Related to Figure 3. Table S16c. Targeted expanded genes in the deep-sea gastropod P. buccinoides compared to shallow sea L. gigantea. Related to Figure 3.
DOI: 10.6084/m9.figshare.26990326.v1
title: Additional file 3 of Chromosome-level genome assembly of the deep-sea snail Phymorhynchus buccinoides provides insights into the adaptation to the cold seep habitat

description: Additional file 3: Table S16a. Enriched GO terms of expanded genes in the deep-sea gastropod P. buccinoides compared to shallow sea L. gigantea. Related to Figure 3. Table S16b. Enriched KEGG pathways of expanded genes in the deep-sea gastropod P. buccinoides compared to shallow sea L. gigantea. Related to Figure 3. Table S16c. Targeted expanded genes in the deep-sea gastropod P. buccinoides compared to shallow sea L. gigantea. Related to Figure 3.
DOI: 10.6084/m9.figshare.26990329
title: Additional file 4 of Chromosome-level genome assembly of the deep-sea snail Phymorhynchus buccinoides provides insights into the adaptation to the cold seep habitat

description: Additional file 4: Table S17a. Enriched GO terms of contracted genes in the deep-sea gastropod P. buccinoides compared to shallow sea L. gigantea. Related to Figure S5. Table S17b. Enriched KEGG pathways of contracted genes in the deep-sea gastropod P. buccinoides compared to shallow sea L. gigantea. Related to Figure S5.
DOI: 10.6084/m9.figshare.26990329.v1
title: Additional file 4 of Chromosome-level genome assembly of the deep-sea snail Phymorhynchus buccinoides provides insights into the adaptation to the cold seep habitat

description: Additional file 4: Table S17a. Enriched GO terms of contracted genes in the deep-sea gastropod P. buccinoides compared to shallow sea L. gigantea. Related to Figure S5. Table S17b. Enriched KEGG pathways of contracted genes in the deep-sea gastropod P. buccinoides compared to shallow sea L. gigantea. Related to Figure S5.
DOI: 10.6084/m9.figshare.26990332
title: Additional file 5 of Chromosome-level genome assembly of the deep-sea snail Phymorhynchus buccinoides provides insights into the adaptation to the cold seep habitat

description: Additional file 5: Table S18. RNA-seq differentially expressed genes (DEGs) in different tissues of P. buccinoides. Related to Figure 4, 5.
DOI: 10.6084/m9.figshare.26990335
title: Additional file 6 of Chromosome-level genome assembly of the deep-sea snail Phymorhynchus buccinoides provides insights into the adaptation to the cold seep habitat

description: Additional file 6: Table S19. SSRs in RNA-seq of P. buccinoides. Related to Figure S12.
DOI: 10.6084/m9.figshare.26990332.v1
title: Additional file 5 of Chromosome-level genome assembly of the deep-sea snail Phymorhynchus buccinoides provides insights into the adaptation to the cold seep habitat

description: Additional file 5: Table S18. RNA-seq differentially expressed genes (DEGs) in different tissues of P. buccinoides. Related to Figure 4, 5.
DOI: 10.6084/m9.figshare.26990338
title: Additional file 7 of Chromosome-level genome assembly of the deep-sea snail Phymorhynchus buccinoides provides insights into the adaptation to the cold seep habitat

description: Additional file 7: Table S20a. Transcription factor in RNA-seq of P. buccinoides. Related to Figure S13. Table S20b. Statistics of transcription factor in P. buccinoides RNA-seq. Related to Figure S13.
DOI: 10.6084/m9.figshare.26990338.v1
title: Additional file 7 of Chromosome-level genome assembly of the deep-sea snail Phymorhynchus buccinoides provides insights into the adaptation to the cold seep habitat

description: Additional file 7: Table S20a. Transcription factor in RNA-seq of P. buccinoides. Related to Figure S13. Table S20b. Statistics of transcription factor in P. buccinoides RNA-seq. Related to Figure S13.
DOI: 10.6084/m9.figshare.26990341
title: Additional file 8 of Chromosome-level genome assembly of the deep-sea snail Phymorhynchus buccinoides provides insights into the adaptation to the cold seep habitat

description: Additional file 8: Table S21. Functional annotation of P. buccinoides.
DOI: 10.6084/m9.figshare.26990341.v1
title: Additional file 8 of Chromosome-level genome assembly of the deep-sea snail Phymorhynchus buccinoides provides insights into the adaptation to the cold seep habitat

description: Additional file 8: Table S21. Functional annotation of P. buccinoides.
DOI: 10.6084/m9.figshare.26990353
title: Additional file 3 of Towards functionally individualised designed footwear recommendation for overuse injury prevention: a scoping review

description: Additional file 3: Table 1. Summary of the study characteristics, publication details, population details, data collection protocol, covariates, and biomechanical outcome variables for midsole hardness and cushioning modifications with a detailed description of the footwear studied. Table 2. Summary of the study characteristics, publication details, population details, data collection protocol, covariates, and biomechanical outcome variables for midsole geometrical modifications (heel-toe drop and midsole thickness) with a detailed description of the footwear studied. Table 3. Summary of the study characteristics, publication details, population details, data collection protocol, covariates, and biomechanical outcome variables for postings with a detailed description of the footwear studied. Table 4. Summary of the study characteristics, publication details, population details, data collection protocol, covariates, and biomechanical outcome variables for wedges with a detailed description of the footwear studied. Table 5. Summary of the study characteristics, publication details, population details, data collection protocol, covariates, and biomechanical outcome variables for arch support systems with a detailed description of the footwear studied. Table 6. Summary of the study characteristics, publication details, population details, data collection protocol, covariates, and biomechanical outcome variables for heel flare modifications with a detailed description of the footwear studied. Table 7. Summary of the study characteristics, publication details, population details, data collection protocol, covariates, and biomechanical outcome variables for crash pad with a detailed description of the footwear studied. Table 8. Summary of the study characteristics, publication details, population details, data collection protocol, covariates, and biomechanical outcome variables for rocker modifications with a detailed description of the footwear studied. Table 9. Summary of the study characteristics, publication details, population details, data collection protocol, covariates, and biomechanical outcome variables for flex grooves modificaions with a detailed description of the footwear studied. Table 10. Summary of the study characteristics, publication details, population details, data collection protocol, covariates, and biomechanical outcome variables for longitudinal bending stiffness and flexibility modificaions with a detailed description of the footwear studied. Table 11. Summary of the study characteristics, publication details, population details, data collection protocol, covariates, and biomechanical outcome variables for upper modificaions with a detailed description of the footwear studied. Table 12. Summary of the study characteristics, publication details, population details, data collection protocol, covariates, and biomechanical outcome variables for lacing modificaions with a detailed description of the footwear studied.
DOI: 10.6084/m9.figshare.26990353.v1
title: Additional file 3 of Towards functionally individualised designed footwear recommendation for overuse injury prevention: a scoping review

description: Additional file 3: Table 1. Summary of the study characteristics, publication details, population details, data collection protocol, covariates, and biomechanical outcome variables for midsole hardness and cushioning modifications with a detailed description of the footwear studied. Table 2. Summary of the study characteristics, publication details, population details, data collection protocol, covariates, and biomechanical outcome variables for midsole geometrical modifications (heel-toe drop and midsole thickness) with a detailed description of the footwear studied. Table 3. Summary of the study characteristics, publication details, population details, data collection protocol, covariates, and biomechanical outcome variables for postings with a detailed description of the footwear studied. Table 4. Summary of the study characteristics, publication details, population details, data collection protocol, covariates, and biomechanical outcome variables for wedges with a detailed description of the footwear studied. Table 5. Summary of the study characteristics, publication details, population details, data collection protocol, covariates, and biomechanical outcome variables for arch support systems with a detailed description of the footwear studied. Table 6. Summary of the study characteristics, publication details, population details, data collection protocol, covariates, and biomechanical outcome variables for heel flare modifications with a detailed description of the footwear studied. Table 7. Summary of the study characteristics, publication details, population details, data collection protocol, covariates, and biomechanical outcome variables for crash pad with a detailed description of the footwear studied. Table 8. Summary of the study characteristics, publication details, population details, data collection protocol, covariates, and biomechanical outcome variables for rocker modifications with a detailed description of the footwear studied. Table 9. Summary of the study characteristics, publication details, population details, data collection protocol, covariates, and biomechanical outcome variables for flex grooves modificaions with a detailed description of the footwear studied. Table 10. Summary of the study characteristics, publication details, population details, data collection protocol, covariates, and biomechanical outcome variables for longitudinal bending stiffness and flexibility modificaions with a detailed description of the footwear studied. Table 11. Summary of the study characteristics, publication details, population details, data collection protocol, covariates, and biomechanical outcome variables for upper modificaions with a detailed description of the footwear studied. Table 12. Summary of the study characteristics, publication details, population details, data collection protocol, covariates, and biomechanical outcome variables for lacing modificaions with a detailed description of the footwear studied.
DOI: 10.6084/m9.figshare.26990356
title: Additional file 4 of Towards functionally individualised designed footwear recommendation for overuse injury prevention: a scoping review

description: Additional file 4: Table 1S. Running-related biomechanical risk factors and their level of evidence for different types of overuse injuries identified by Willwacher et al. [15]. Arrows pointing upwards indicate that an elevation of the biomechanical risk factor is associated with a specific overuse injury, arrows pointing downwards interpreted vice versa. Bolded biomechanical risk factors were identified in prospective studies; at least two independent retrospective studies identified unbolded biomechanical risk factors. A detailed description of the biomechanical risk factors is provided below the table.
DOI: 10.6084/m9.figshare.26990356.v1
title: Additional file 4 of Towards functionally individualised designed footwear recommendation for overuse injury prevention: a scoping review

description: Additional file 4: Table 1S. Running-related biomechanical risk factors and their level of evidence for different types of overuse injuries identified by Willwacher et al. [15]. Arrows pointing upwards indicate that an elevation of the biomechanical risk factor is associated with a specific overuse injury, arrows pointing downwards interpreted vice versa. Bolded biomechanical risk factors were identified in prospective studies; at least two independent retrospective studies identified unbolded biomechanical risk factors. A detailed description of the biomechanical risk factors is provided below the table.