cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/m2ky7vz8fk.1
title: Data for Sediment nitrate reduction processes in response to environmental gradients along an urban river-estuary-sea continuum

description: Sediment dentrification (DEN), anaerobic ammonium oxidation (Anammox), and dissimilatory nitrate reduction to ammonium (DNRA) are three important nitrate (NO3–) reduction pathways in aquatic ecosystems. These processes modify nitrogen (N) loadings from land to the ocean, having important implication on management of coastal eutrophication. Here, we present rate and gene abundance data on these three pathways along a N-laden urban river-estuary-sea continuum comprised of three types of ecosystems (urban river, estuary, and adjacent sea) in the densely populated Shanghai-East China Sea area. Physiochemical data for each sampling site are also included in this dataset. We found the DEN, Anammox, and DNRA rates decreased seaward along the continuum both in summmer and winter in reponse to decreasing sediment organic matter (OM, 20 to 7 to 7 mg C g-1), ferrous oxide (Fe(II), 9 to 2.7 to 2.8 mg Fe g-1), and bottom water dissolved inorganic nitrogen (DIN, 543 to 112 to 21 μM) concentrations. Among these pathways, DEN remained the major component (~69.6%) throughout the continuum, while Anammox (47.9%) rivaled DEN (48.3%) in the urban river habitat in winter. N retention index (NIRI), ratios between retained and removed DIN, ranged from 0–0.5 and increased downstream. Annually, the continuum removes ~38.6% of N input from the Great Shanghai area. The estuary and adjacent sea removed most of the loading in absolute terms, but urban river removed more per km2, and thus was a N cycling hotspot. Together, these results suggest that the decreasing gradient of OM and inorganic matter shape the distribution of NO3– reduction along the continuum, reflecting the diminishing impact of river and human inputs from the urban river to the ocean. This data product can be used for metadata analysis to advance our understanding of nitrogen cycling and dynamics.
DOI: 10.17632/m2ky7vz8fk.2
title: Data for: Sediment nitrate reduction processes in response to environmental gradients along an urban river-estuary-sea continuum

description: Sediment dentrification (DEN), anaerobic ammonium oxidation (Anammox), and dissimilatory nitrate reduction to ammonium (DNRA) are three important nitrate (NO3–) reduction pathways in aquatic ecosystems. These processes modify nitrogen (N) loadings from land to the ocean, having important implication on management of coastal eutrophication. Here, we present rate and gene abundance data on these three pathways along a N-laden urban river-estuary-sea continuum comprised of three types of ecosystems (urban river, estuary, and adjacent sea) in the densely populated Shanghai-East China Sea area. Physiochemical data for each sampling site are also included in this dataset. We found the DEN, Anammox, and DNRA rates decreased seaward along the continuum both in summmer and winter in reponse to decreasing sediment organic matter (OM, 20 to 7 to 7 mg C g-1), ferrous oxide (Fe(II), 9 to 2.7 to 2.8 mg Fe g-1), and bottom water dissolved inorganic nitrogen (DIN, 543 to 112 to 21 μM) concentrations. Among these pathways, DEN remained the major component (~69.6%) throughout the continuum, while Anammox (47.9%) rivaled DEN (48.3%) in the urban river habitat in winter. N retention index (NIRI), ratios between retained and removed DIN, ranged from 0–0.5 and increased downstream. Annually, the continuum removes ~38.6% of N input from the Great Shanghai area. The estuary and adjacent sea removed most of the loading in absolute terms, but urban river removed more per km2, and thus was a N cycling hotspot. Together, these results suggest that the decreasing gradient of OM and inorganic matter shape the distribution of NO3– reduction along the continuum, reflecting the diminishing impact of river and human inputs from the urban river to the ocean. This data product can be used for metadata analysis to advance our understanding of nitrogen cycling and dynamics.
DOI: 10.17632/w4d7sdc629.1
title: Glia-specific nuclei isolation and single cell transcriptomics inform astrocyte pathology in human temporal lobe epilepsy

description: The role of human glia in many neurological disorders is still poorly understood due to the lack of tools that reliably isolate specific glial subpopulations from bulk tissue, directly from their native niche. To better understand the contributions of glial pathology in human epilepsy, we developed and validated a novel sorting strategy that simultaneously isolates nuclei populations of astrocytes (PAX6+), oligodendroglial progenitors (OPCs) (OLIG2+) and neurons (NEUN+) from non-pathological fresh-frozen human postmortem temporal neocortex brain tissue (TL Control) and then employed it, in combination with single cell RNA-seq, to characterize the cell-type specific transcriptome alterations in epilepsy temporal neocortex derived from fresh surgical material in patients with medically refractory temporal lobe epilepsy (TLE). The provided Metadata file contains exhaustive information on the different types of processed data provided herein, and the protocols used to generate it. Please not that due to space constriction, the raw FASTQ data are only provided to the GEO (currently submitted in folder "GEO_Epilepsy:nadiats", review in process, to be released immediately after review).
DOI: 10.17632/w4d7sdc629.2
title: Glia-specific nuclei isolation and single cell transcriptomics inform astrocyte pathology in human temporal lobe epilepsy

description: The role of human glia in many neurological disorders is still poorly understood due to the lack of tools that reliably isolate specific glial subpopulations from bulk tissue, directly from their native niche. To better understand the contributions of glial pathology in human epilepsy, we developed and validated a novel sorting strategy that simultaneously isolates nuclei populations of astrocytes (PAX6+), oligodendroglial progenitors (OPCs) (OLIG2+) and neurons (NEUN+) from non-pathological fresh-frozen human postmortem temporal neocortex brain tissue (TL Control) and then employed it, in combination with single cell RNA-seq, to characterize the cell-type specific transcriptome alterations in epilepsy temporal neocortex derived from fresh surgical material in patients with medically refractory temporal lobe epilepsy (TLE). The provided Metadata file contains exhaustive information on the different types of processed data provided herein, and the protocols used to generate it. Please not that due to space constriction, the raw FASTQ data are only provided to the GEO (currently submitted in folder "GEO_Epilepsy:nadiats", review in process, to be released immediately after review).
DOI: 10.17632/c9dn6snk6w.1
title: PrimPol-mediated adaptive response suppresses fork reversal in BRCA1-deficient cells. Quinet et al

description: Unprocessed microscopy images, gels, and blots published in Quinet et al., 2020, Molecular Cell 77, 1–14 February 6, 2020 https://doi.org/10.1016/j.molcel.2019.10.008
DOI: 10.17632/rcxnhsbffh.2
title: Right-hand and Feet Motor Imagery (EEG Signals)

description: EEG Recordings on Right-hand and Feet Motor Imagery for training and testing. Data is formatted as DataFrame and archived in CSV files with the following fields: [Date, Subject, Session, Run, Events, Time, Ch1,...,Ch15]. Registers were sampled at 512 Hz. Full description of data may be found at: https://www.degruyter.com/view/j/bmte.2016.61.issue-1/bmt-2014-0117/bmt-2014-0117.xml. Data is also archived in MAT files: -Two class motor imagery (002-2014)- URL: http://bnci-horizon-2020.eu/database/data-sets. You can load this data easily using pandas in Python: # Python 3.x import pandas as pd df = pd.read_csv('S01T.csv') df.head()
DOI: 10.17632/kbmdzxv53w.1
title: Pregnancy outcomes in twin gestation

description: Twin gestation is generally associated with significant feto-maternal complications. Women with twin pregnancy need more contact with the health care provider during the antenatal period. This study evaluated the pregnancy outcomes in women with twin gestation at a central hospital in Bulawayo, Zimbabwe. The study was conducted at Mpilo Central Hospital, a tertiary health institution in Zimbabwe from 1 January 2017 to 31 July 2017. It was based in labour ward and postnatal ward. The inclusion criteria was women with twin gestation attending Mpilo Central Hospital maternity unit for delivery at or above the gestational age of 28 weeks. The objective was to determine the pregnancy outcomes in women with twin gestation. A data collection form was used to record data on patient demographics, antenatal information, and maternal and perinatal outcomes. The main outcomes were booking status, gestational age at booking, antenatal hospitalization, PPROM, hypertensive disorders of pregnancy, anaemia, preterm labor and delivery, cesarean section, HIV infection, stillbirth, NICU/ SCBU admissions, birth asphyxia, prematurity and low birth weight. The statistical analyses were performed using the Statistical Package for Social Sciences (SPSS version 20). Basic descriptive statistics were used to describe maternal characteristics and delivery outcomes for different categories. The results were presented using tables and graphs. Chi-square test analyses were performed to measure the relationship between some outcomes. During the study period, a total of 5 072 deliveries occurred at Mpilo Central Hospital. 117 (2.31%) of the women had twin gestation of which 115 (98.3%) were enrolled into the study. This study showed that women with twin gestation are at high risk of adverse outcomes. 39.1% were unbooked, 26.1% were HIV positive, and 40% were hospitalized during antenatal period. There was high risk of hypertensive disorders which affected 28.7% of mothers, preterm labor (36.5%), PPROM/ PROM (20.9%), anaemia (27.8%), caesarian delivery (43.5%) and postpartum haemorrhage (15.7%). Babies were also at high risk adverse perinatal outcomes which included prematurity which affected 48.7% of the babies, low birth weight (49.6%), birth asphyxia (7.8%), respiratory distress (12.2%). 35.2% of the babies were admitted into NICU or SCBU.
DOI: 10.17632/kxrsf6cghn.1
title: Data for: RNA-seq data analysis of stimulated hepatocellular carcinoma cells treated with epigallocatechin gallate and fisetin reveals target genes and action mechanisms (Part2 - fisetin treatment)
DOI: 10.5281/zenodo.3522623
title: Ngwi languages comparative tone box

description: This is a comparative tone box of the Ngwi branch. Previous research has identified consonantal effects on pitch as important precursors to the phonologization of rising tones. However, evidence from tonal evolution studies in East and Southeast Asian languages suggests that the high register (i.e., tones above mid pitch) is an additional source of rising. The current study examines the plausibility of the high &gt; rising pathway by testing two hypotheses in a ‘dialect laboratory’: (1) that a rising tone in one language will correspond to a high register tone in a closely related dialect or language, and (2) that consonantal conditioning is not required for a rising tone to emerge. These hypotheses are tested on transcribed tone data from 14 Ngwi (Loloish, Tibeto-Burman) language clusters (82 language varieties in total), organized into a comparative tone box. This study examines the correspondence patterns of rising tones across a database of 82 Ngwi languages and dialects, grouped into 14 lower-level clusters. The data consist of the language varieties’ current reflexes of PN tone categories, compiled from published and unpublished sources (see Appendix 1 for a complete listing). To facilitate comparison, the tonal reflexes are arranged in a tone box, adapted from Gedney (1972), with each row representing a separate initial consonant type, grouped together by PN tone category, and each column representing a different Ngwi language variety. The results support both hypotheses. The findings imply that rising tones evolve from high register tones, with or without consonant conditioning.Previous research has identified consonantal effects on pitch as important precursors to the phonologization of rising tones. However, evidence from tonal evolution studies in East and Southeast Asian languages suggests that the high register (i.e., tones above mid pitch) is an additional source of rising. The current study examines the plausibility of the high &gt; rising pathway by testing two hypotheses in a ‘dialect laboratory’: (1) that a rising tone in one language will correspond to a high register tone in a closely related dialect or language, and (2) that consonantal conditioning is not required for a rising tone to emerge. These hypotheses are tested on transcribed tone data from 14 Ngwi (Loloish, Tibeto-Burman) language clusters (82 language varieties in total), organized into a comparative tone box. The results support both hypotheses. The findings imply that rising tones evolve from high register tones, with or without consonant conditioning.
DOI: 10.17632/cxgsfm5mjy.1
title: chitinBombyxeriLarva

description: we present the extraction and chemical composition of chitins of different purity grade from an insect source so called Bombyx eri larva
DOI: 10.17632/f8ykr3bt7y.2
title: Dataset for SP-SDS Automated Colony Counters

description: These images represent microorganisms culture experiments in Petri dishes using the SP-SDS technique. The images were acquired in a laboratory and include shadows, reflections, bubbles and agar contamination, including experiments with failed or unexpected results.
DOI: 10.17632/n6bzf2nzj6.1
title: Data for: RNA-seq data analysis of stimulated hepatocellular carcinoma cells treated with epigallocatechin gallate and fisetin reveals target genes and action mechanisms (Part1 - epigallocatechin gallate treatment)
DOI: 10.17632/rrxv5twyd3.1
title: Perinatal outcomes in a low-resource setting

description: Maternal morbidity and mortality are very important public health issues. The quality of health care is depicted by or demonstrated by maternal and perinatal outcomes. The poorer these outcomes are, the poorer and less developed the country is. Unbooked women have generally been known to have poorer obstetric outcomes than their booked counterparts. This study evaluated pregnancy outcomes in booked and unbooked women in one tertiary hospital in urban Zimbabwe. The study was based in the labour ward and postnatal wards of Mpilo Central Hospital. Maternal and perinatal outcomes were compared between the booked and unbooked pregnancies. A booked pregnancy was defined as a woman who had written documented evidence of at four antenatal visits with all relevant standard booking blood results. A questionnaire was used to obtain primary data on patient demographics and maternal and perinatal outcomes. The study period was 01 March 2016 to 31 May 2016.The main outcome measures were gestational age at delivery, stage of labor at delivery, HIV prevalence, hypertensive disorders, preterm delivery, Caesarean section rates, duration of labour, perineal tears, postpartum hemorrhage, birth weight, stillbirth rates, birth asphyxia, neonatal intensive care unit admissions, special baby care admissions and maternal death. All questionnaires were scrutinized for errors before data entry and analysis. Data was computed into Microsoft excel. Proportions and percentages were calculated in each category for different variables. Basic descriptive statistics were used to describe maternal characteristics and delivery outcomes for the different age categories. Quantitative variables were described using measures of central tendency (mean, median). The results were presented using tables and graphs. Chi-square testing was used to test for association between variables of interests, such as socio-demographic characteristics of mothers and pregnancy outcomes. Significance was at a p value less than 0.05. There were a total of 2212 deliveries during the study period. A total of 2094 women were recruited into the study with 1509 (72.06 %) women booked and 585 (27.94%) women unbooked. Financial constraint was the commonest reason for not booking. The study found significant differences with respect to preeclampsia (p=0.0002), stillbirth (p&lt;0.0001), low birth weight (p=0.004), preterm labour (p&lt;0.00001), birth asphyxia (p=0.002), admission to NICU (p&lt;0.00001), admission to Special Care Baby Unit (p=0.002) between unbooked and booked women. HIV prevalence also differed significantly between the two groups (p=0.001) and so did presentation in the advanced stages of labour and maternal deaths (p=0.04). The study did not find any significant differences with respect to Caesarean section rates postpartum hemorrhage and perineal tears.
DOI: 10.17632/7h2sg47s4j.1
title: Oligomerization of the NLR immune receptor RPP7 triggered by the atypical resistance protein RPW8/HR. Li et al

description: It contains all the raw data for immunoblots in this paper.
DOI: 10.17632/hyzv55ynfx.1
title: SMART EDUCATIONAL CLUSTER CONCEPTUALIZATION

description: This paper examines the conceptualization of a multi-component, logically composed structure that provides the ability for self-organizing of distributed learning process based on information and communication technologies. The theoretical basis for the conceptual model is the synthetized paradigm of the educational process and the integration of intelligent agent, realized by final technological solutions.
DOI: 10.21227/yjsc-bk90
title: Noise Data for Offshore Platform

description: Noise control is required to ensure crew habitability onboard anoffshore platform. Applying noise prediction is important to identifythe potential noise problem at the early stage of the offshore platform design to avoid costly retrofitting in the implementation stage. Noise data were collected.The 4 output targets are namely: spatial sound pressure level (SPL), spatial average SPL, structure-borne noise and airborne noise at different octave frequencies (e.g. 125Hz, 250Hz, 500Hz, 1000Hz, 2000Hz, 4000Hz, 8000 Hz). The spatial SPL consists of both direct and diffuse field (or reverberant field) obtained from a commercial SEA modeling software called VAOne ™ and MATLAB™, respectively. The spatial SPL is achieved from the logarithmic sum of both the direct field and reverberant component. The 13 inputs are the parameters of the rooms in the offshore platform.
DOI: 10.5285/cb47cc464c5a41de8c718d117437b4e6
title: MIDAS Open: UK daily rainfall data, v201908

description: The UK daily rainfall data contain rainfall accumulation and precipitation amounts over a 24 hour period. The data were collected by observation stations operated by the Met Office across the UK and transmitted within the following message types: NCM, AWSDLY, DLY3208 and SSER. The data spans from 1853 to 2018. Over time a range of rain gauges have been used - see section 5.6 and the relevant message type information in the linked MIDAS User Guide for further details. This version supersedes the previous version of this dataset and a change log is available in the archive, and in the linked documentation for this record, detailing the differences between this version and the previous version. The change logs detail new, replaced and removed data. This dataset is part of the Midas-open dataset collection made available by the Met Office under the UK Open Government Licence, containing only UK mainland land surface observations owned or operated by Met Office. It is a subset of the fuller, restricted Met Office Integrated Data Archive System (MIDAS) Land and Marine Surface Stations dataset, also available through the Centre for Environmental Data Analysis - see the related dataset section on this record. A large proportion of the UK raingauge observing network (associated with WAHRAIN, WADRAIN and WAMRAIN for hourly, daily and monthly rainfall measurements respectively) is operated by other agencies beyond the Met Office, and are consequently currently excluded from the Midas-open dataset. Currently this represents approximately 13% of available daily rainfall observations within the full MIDAS collection.
DOI: 10.21227/28ms-p995
title: A123's Lithium Iron Phosphate (ANR26650M1-B) Battery Cell Data

description: A computational efficient battery pack model with thermal consideration is essential for simulation before real-time embedded implementation. The proposed temperature-dependent battery model (LiFePO4 battery cell, ANR26650M1-B from A123 Systems) will increase the lifespan of the battery. The simulation outputs are validated by a set of independent experimental data at a different ambient temperature using the dataset collected at 5 °C, 15 °C, 25 °C, 35 °C and 45 °C.
DOI: 10.21227/bb52-j318
title: Container Vessel Data

description: The uncertainties in diesel engine parameters often result in an inaccurate model. The data describe the actual data to identify the faults using exploratory data analysis to avoid high shipping cost.
DOI: 10.21943/auas.10078253.v1
title: Dataset (SPSS-file) related to "Concurrent validity and discriminative ability of Dutch performance-based motor tests in 5 to 6 years old children"

description: This dataset contains complete testing outcomes of three different motor skill tests, namely the Movement Assessment Battery for Children, the Baecke-Fassaert Motor Test, and the 4- and 8-Skills Scan.<br><br> The study sample consists of 219 primary school children of 5 to 6 years old.Testing took place at 3 schools in Amsterdam, The Netherlands.<br>Project: MAMBO (Measuring Motor Skills Primary School Amsterdam)<br><br> Because of the sensitive nature of the data, the fileset is confidential and will be shared only under strict conditions. For more information contact opensciencesupport@hva.nl.
DOI: 10.25612/837.2mg7abwwz8e2
title: HISD School Information

description: General campus-level address and contact information for elementary, middle, and high schools in the Houston Independent School District.
DOI: 10.5285/b37382e8c1e74b849831a5fa13afdcae
title: MIDAS Open: UK daily temperature data, v201908

description: The UK daily temperature data contain maximum and minimum temperatures (air, grass and concrete slab) measured over a period of up to 24 hours. The measurements were recorded by observation stations operated by the Met Office across the UK and transmitted within NCM, DLY3208 or AWSDLY messages. The data span from 1853 to 2018. For details on measurement techniques, including calibration information and changes in measurements, see section 5.2 of the MIDAS User Guide linked to from this record. Soil temperature data may be found in the UK soil temperature datasets linked from this record. This version supersedes the previous version of this dataset and a change log is available in the archive, and in the linked documentation for this record, detailing the differences between this version and the previous version. The change logs detail new, replaced and removed data. This dataset is part of the Midas-open dataset collection made available by the Met Office under the UK Open Government Licence, containing only UK mainland land surface observations owned or operated by the Met Office. It is a subset of the fuller, restricted Met Office Integrated Data Archive System (MIDAS) Land and Marine Surface Stations dataset, also available through the Centre for Environmental Data Analysis - see the related dataset section on this record. Currently this represents approximately 95% of available daily temperature observations within the full MIDAS collection.
DOI: 10.17632/fv27gmr8t4.3
title: Rs1801133 polymorphisms of the methylenetetrahydrofolate reductase gene are associated with risk of psoriatic arthritis and methotrexate-associated adverse events

description: Supplemental Tables 1-2
DOI: 10.21227/eb18-g407
title: Container Vessel Data

description: The uncertainties in diesel engine parameters often result in an inaccurate model. The data describe the actual data to identify the faults using exploratory data analysis to avoid high shipping cost.