cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10419592
title: Sound-Frameworks: Gorm Haldor-Jorgensen (Harman) - Interview

description: This is a transcription of an interview that took place within the project Sound-Frameworks: Collaborative Frameworks for Integrating Sound Within Urban Design and Planning Processes.

Sound-Frameworks is an action-led research project that explores the role of sound in urban design and city planning. The project is led by the artist and researcher Dr. Sven Anderson and hosted by Theatrum Mundi, a non-profit organisation that expands the craft of city-making through collaboration with artists.

Central to this project is a focus on how urban sonic experience can serve as a driver for design in the public realm. The public realm constitutes the integral connective tissue that defines the contemporary cityscape, within which different individuals, communities and institutions engage with each other through cooperation and conflict. Sound has remained a neglected dimension of this domain, generally coming into consideration only within late stages of design through efforts to ameliorate the impact of environmental noise. As the densification of urban territories accelerates, the role of sonic experience as an essential factor to be addressed by urban designers must be reassessed.

Sound-Frameworks explores new methodologies for integrating sound in urban design through the production of three inter-related resources:

1. A sound in practice survey2. A publication on best practice guidelines in this field3. An online tool to guide the integration of sound in the design of the public realm

Drawing from environmental acoustics, spatial planning, contemporary sound studies, the project initiates a framework to extend regional, national and international objectives for integrated city planning and contribute to public realm initiatives in Europe and beyond.

Sound-Frameworks has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 101032632.

Sound-Frameworks is hosted by Theatrum Mundi (UK) and supported by partnerships with Arup (UK), UrbanIdentity (CH), Struer Kommune (DK), the University of Oxford Faculty of Music (UK) and the Sound Studies Lab at the University of Copenhagen (DK). 

Sound-Frameworks: https://www.soundframeworks.orgTheatrum Mundi: https://www.theatrum-mundi.orgSven Anderson: https://www.svenanderson.net
DOI: 10.5281/zenodo.17059164
title: Rapid Hazard Profiling of Emerging Contaminants in the French Broad River Post-Hurricane Helene

description: Extreme weather events are increasingly impacting freshwater systems, yet timely chemical hazard assessments in their aftermath remain scarce. This study applied a rapid hazard profiling approach to characterize organic contaminants in the French Broad River, North Carolina, following historic flooding from Hurricane Helene. Sur-face water samples were collected from five sites along an 80-kilometer stretch of the river 15 days post-storm and analyzed using liquid chromatography–high-resolution mass spectrometry. Targeted analysis quantified 11 per- and polyfluoroalkyl substances, while non-targeted analysis (NTA) and suspect screening detected 468 compounds across multiple confidence levels. Hazard screening via the EPA cheminformatics module suggested medium to very high toxicity potential for many compounds: 64% were suspected acute aquatic toxicants, 58% posed human developmental risks, 23% were classified as endocrine disruptors, 12% as reproductive toxicants, and 10% as known or suspected carcinogens. At one downstream site, concentrations of PFOS and PFOA exceeded EPA maximum contaminant levels for drinking water. Site-specific contaminant profiles by chemical class (PFAS, pesticides, plastic additives, pharma-ceuticals) indicated contributions from flood-damaged wastewater infrastructure and plastic debris. These findings highlight the vulnerability of freshwater systems to con-taminant mobilization during extreme floods and demonstrate the utility of integrated NTA and cheminformatics for rapid post-disaster monitoring.

This supplementary dataset includes the raw data files associated with targeted quantitation, nontargeted analysis, and cheminformatic hazard assessments.
DOI: 10.5281/zenodo.15051123
title: Phyloseq 16S v5v6 accompanying paper: deGeus et al (Goat milk and fecal microbiome around parturition)

description: Y. de Geus, R. Blok, P. Scherpenisse, F. Harders, M.P. Spaninks, J.A. Stegeman, L. Benedictus, G. Koop, L.A.M. Smit and A. Bossers

Goat milk and fecal microbiome around parturition: a longitudinal study

Total bacterial count (TBC) in bulk milk is an important quality parameter in goat milk and is elevated around kidding. High bacterial counts can shorten shelf life and negatively impact cheese production. Knowing the bacterial composition of goat milk and its relationship with the kidding period, as well as identifying potential sources of microbial contamination, may help farmers to implement preventive measures to control TBC in both bulk milk and individual goat milk.

We conducted a longitudinal, observational study on four Dutch dairy goat farms, collecting milk and fecal samples from 67 goats before and after kidding, along with 16 bulk milk samples spanning 10 weeks around kidding. Milk samples were analyzed using conventional bacterial culturing and MALDI-TOF MS species identification, together with bacterial load (16S-qPCR) and microbiome composition (16S-rRNA amplicon sequencing). To determine potential fecal contamination of milk samples, we also analyzed the fecal microbiome and compared it with matching individual goat milk microbiomes.

Publication reference: pending.
DOI: 10.5281/zenodo.15305155
title: High throughput sequencing alignments of Chlorophytum species.

description: Alignments based on HTS data from the Angiosperm 353 probe set. The species included are from the Chlorophytum genus, and were used for a species delimitation study.
DOI: 10.5281/zenodo.10417508
title: Sound-Frameworks: Sara El Samman (AXP Urbicus) - Survey Interview

description: This is a transcription of a survey interview that took place within the project Sound-Frameworks: Collaborative Frameworks for Integrating Sound Within Urban Design and Planning Processes.

Sound-Frameworks is an action-led research project that explores the role of sound in urban design and city planning. The project is led by the artist and researcher Dr. Sven Anderson and hosted by Theatrum Mundi, a non-profit organisation that expands the craft of city-making through collaboration with artists.

Central to this project is a focus on how urban sonic experience can serve as a driver for design in the public realm. The public realm constitutes the integral connective tissue that defines the contemporary cityscape, within which different individuals, communities and institutions engage with each other through cooperation and conflict. Sound has remained a neglected dimension of this domain, generally coming into consideration only within late stages of design through efforts to ameliorate the impact of environmental noise. As the densification of urban territories accelerates, the role of sonic experience as an essential factor to be addressed by urban designers must be reassessed.

Sound-Frameworks explores new methodologies for integrating sound in urban design through the production of three inter-related resources:

1. A sound in practice survey2. A publication on best practice guidelines in this field3. An online tool to guide the integration of sound in the design of the public realm

Drawing from environmental acoustics, spatial planning, contemporary sound studies, the project initiates a framework to extend regional, national and international objectives for integrated city planning and contribute to public realm initiatives in Europe and beyond.

Sound-Frameworks has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 101032632.

Sound-Frameworks is hosted by Theatrum Mundi (UK) and supported by partnerships with Arup (UK), UrbanIdentity (CH), Struer Kommune (DK), the University of Oxford Faculty of Music (UK) and the Sound Studies Lab at the University of Copenhagen (DK). 

Sound-Frameworks: https://www.soundframeworks.orgTheatrum Mundi: https://www.theatrum-mundi.orgSven Anderson: https://www.svenanderson.net
DOI: 10.5281/zenodo.15305485
title: HTS raw data of 30 Chlorophytum species

description: HTS raw data obtained using the Angiosperms 353 probeset. This datasets contains the raw data of 30 plant species found in the genus Chlorophytum.
DOI: 10.5281/zenodo.10412891
title: Sound-Frameworks: John Fogde (Struer Kommune) - Survey Interview

description: This is a transcription of a survey interview that took place within the project Sound-Frameworks: Collaborative Frameworks for Integrating Sound Within Urban Design and Planning Processes.

Sound-Frameworks is an action-led research project that explores the role of sound in urban design and city planning. The project is led by the artist and researcher Dr. Sven Anderson and hosted by Theatrum Mundi, a non-profit organisation that expands the craft of city-making through collaboration with artists.

Central to this project is a focus on how urban sonic experience can serve as a driver for design in the public realm. The public realm constitutes the integral connective tissue that defines the contemporary cityscape, within which different individuals, communities and institutions engage with each other through cooperation and conflict. Sound has remained a neglected dimension of this domain, generally coming into consideration only within late stages of design through efforts to ameliorate the impact of environmental noise. As the densification of urban territories accelerates, the role of sonic experience as an essential factor to be addressed by urban designers must be reassessed.

Sound-Frameworks explores new methodologies for integrating sound in urban design through the production of three inter-related resources:

1. A sound in practice survey2. A publication on best practice guidelines in this field3. An online tool to guide the integration of sound in the design of the public realm

Drawing from environmental acoustics, spatial planning, contemporary sound studies, the project initiates a framework to extend regional, national and international objectives for integrated city planning and contribute to public realm initiatives in Europe and beyond.

Sound-Frameworks has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 101032632.

Sound-Frameworks is hosted by Theatrum Mundi (UK) and supported by partnerships with Arup (UK), UrbanIdentity (CH), Struer Kommune (DK), the University of Oxford Faculty of Music (UK) and the Sound Studies Lab at the University of Copenhagen (DK). 

Sound-Frameworks: https://www.soundframeworks.orgTheatrum Mundi: https://www.theatrum-mundi.orgSven Anderson: https://www.svenanderson.net
DOI: 10.5281/zenodo.10419746
title: Sound-Frameworks: Alex Cao (Arup) and Yi Chen (Bartlett) - Interview

description: This is a transcription of an interview that took place within the project Sound-Frameworks: Collaborative Frameworks for Integrating Sound Within Urban Design and Planning Processes.

Sound-Frameworks is an action-led research project that explores the role of sound in urban design and city planning. The project is led by the artist and researcher Dr. Sven Anderson and hosted by Theatrum Mundi, a non-profit organisation that expands the craft of city-making through collaboration with artists.

Central to this project is a focus on how urban sonic experience can serve as a driver for design in the public realm. The public realm constitutes the integral connective tissue that defines the contemporary cityscape, within which different individuals, communities and institutions engage with each other through cooperation and conflict. Sound has remained a neglected dimension of this domain, generally coming into consideration only within late stages of design through efforts to ameliorate the impact of environmental noise. As the densification of urban territories accelerates, the role of sonic experience as an essential factor to be addressed by urban designers must be reassessed.

Sound-Frameworks explores new methodologies for integrating sound in urban design through the production of three inter-related resources:

1. A sound in practice survey2. A publication on best practice guidelines in this field3. An online tool to guide the integration of sound in the design of the public realm

Drawing from environmental acoustics, spatial planning, contemporary sound studies, the project initiates a framework to extend regional, national and international objectives for integrated city planning and contribute to public realm initiatives in Europe and beyond.

Sound-Frameworks has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 101032632.

Sound-Frameworks is hosted by Theatrum Mundi (UK) and supported by partnerships with Arup (UK), UrbanIdentity (CH), Struer Kommune (DK), the University of Oxford Faculty of Music (UK) and the Sound Studies Lab at the University of Copenhagen (DK). 

Sound-Frameworks: https://www.soundframeworks.orgTheatrum Mundi: https://www.theatrum-mundi.orgSven Anderson: https://www.svenanderson.net
DOI: 10.5281/zenodo.15119224
title: The authigenic and detrital neodymium isotopic composition in the modern Mediterranean Sea: implication for paleocirculation proxy

description: The authigenic and detrital neodymium isotopic composition in the modern Mediterranean Sea: implication for paleocirculation proxy — numerical data

 

This data file contains the numerical data of the study ‘The authigenic and detrital neodymium isotopic composition in the modern Mediterranean Sea: implication for paleocirculation proxy’. It contains five sheets:

1.         New data on authigenic (foraminiferal tests or leachates) and residual Nd isotopic composition in the Mediterranean Sea

2.         Compilation of authigenic, detrital and seawater eNd values in the Mediterranean Sea.

3.         Elemental composition of leachates from the new samples

4.         Compilation of the Nd isotopic composition of Mediterranean seawater and the detrital Nd isotopic composition at the closest sites to the seawater stations in order to evaluate the influence of the local Nd source on the seawater Nd isotopic composition

5.         Parameters used for a 6-box model to assess the Nd cycle in the Mediterranean Sea
DOI: 10.5281/zenodo.10418672
title: Sound-Frameworks: Daniel Blyth (Publica) - Survey Interview

description: This is a transcription of a survey interview that took place within the project Sound-Frameworks: Collaborative Frameworks for Integrating Sound Within Urban Design and Planning Processes.

Sound-Frameworks is an action-led research project that explores the role of sound in urban design and city planning. The project is led by the artist and researcher Dr. Sven Anderson and hosted by Theatrum Mundi, a non-profit organisation that expands the craft of city-making through collaboration with artists.

Central to this project is a focus on how urban sonic experience can serve as a driver for design in the public realm. The public realm constitutes the integral connective tissue that defines the contemporary cityscape, within which different individuals, communities and institutions engage with each other through cooperation and conflict. Sound has remained a neglected dimension of this domain, generally coming into consideration only within late stages of design through efforts to ameliorate the impact of environmental noise. As the densification of urban territories accelerates, the role of sonic experience as an essential factor to be addressed by urban designers must be reassessed.

Sound-Frameworks explores new methodologies for integrating sound in urban design through the production of three inter-related resources:

1. A sound in practice survey2. A publication on best practice guidelines in this field3. An online tool to guide the integration of sound in the design of the public realm

Drawing from environmental acoustics, spatial planning, contemporary sound studies, the project initiates a framework to extend regional, national and international objectives for integrated city planning and contribute to public realm initiatives in Europe and beyond.

Sound-Frameworks has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 101032632.

Sound-Frameworks is hosted by Theatrum Mundi (UK) and supported by partnerships with Arup (UK), UrbanIdentity (CH), Struer Kommune (DK), the University of Oxford Faculty of Music (UK) and the Sound Studies Lab at the University of Copenhagen (DK). 

Sound-Frameworks: https://www.soundframeworks.orgTheatrum Mundi: https://www.theatrum-mundi.orgSven Anderson: https://www.svenanderson.net
DOI: 10.5065/d6251g81
title: HLY-02-03 Ship Underway Data - Seabeam Centerbeam Depth (Plot). Version 1.0

description: This data set consists of Seabeam Centerbeam Depth plots from the SBI U.S. Coast Guard Cutter (USCGC) Healy Summer 2002 Cruise (HLY-02-03). Files are in .png format.
DOI: 10.5281/zenodo.10419520
title: Sound-Frameworks: Jacob Eriksen (Sound Art Lab) - Interview

description: This is a transcription of an interview that took place within the project Sound-Frameworks: Collaborative Frameworks for Integrating Sound Within Urban Design and Planning Processes.

Sound-Frameworks is an action-led research project that explores the role of sound in urban design and city planning. The project is led by the artist and researcher Dr. Sven Anderson and hosted by Theatrum Mundi, a non-profit organisation that expands the craft of city-making through collaboration with artists.

Central to this project is a focus on how urban sonic experience can serve as a driver for design in the public realm. The public realm constitutes the integral connective tissue that defines the contemporary cityscape, within which different individuals, communities and institutions engage with each other through cooperation and conflict. Sound has remained a neglected dimension of this domain, generally coming into consideration only within late stages of design through efforts to ameliorate the impact of environmental noise. As the densification of urban territories accelerates, the role of sonic experience as an essential factor to be addressed by urban designers must be reassessed.

Sound-Frameworks explores new methodologies for integrating sound in urban design through the production of three inter-related resources:

1. A sound in practice survey2. A publication on best practice guidelines in this field3. An online tool to guide the integration of sound in the design of the public realm

Drawing from environmental acoustics, spatial planning, contemporary sound studies, the project initiates a framework to extend regional, national and international objectives for integrated city planning and contribute to public realm initiatives in Europe and beyond.

Sound-Frameworks has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 101032632.

Sound-Frameworks is hosted by Theatrum Mundi (UK) and supported by partnerships with Arup (UK), UrbanIdentity (CH), Struer Kommune (DK), the University of Oxford Faculty of Music (UK) and the Sound Studies Lab at the University of Copenhagen (DK). 

Sound-Frameworks: https://www.soundframeworks.orgTheatrum Mundi: https://www.theatrum-mundi.orgSven Anderson: https://www.svenanderson.net
DOI: 10.5281/zenodo.15232458
title: Phylogenomic evidence reveals non-monophyly of Paepalanthoideae and challenges the broad concept of Paepalanthus (Eriocaulaceae)

description: Sequence aligment of target capture sequences of multiple species of Eriocaulaceae. Alignments are names after the genes in the Angiosperms353 bait set. Please see the related publication for details about voucher specimens.

Methods: The demultiplexed raw reads from sequencing were subjected to quality filtering and trimming using the default settings of the “clean” function in Captus v1.3.2 (Ortiz & al., 2023), where average PHRED quality score threshold of 13 for trailing reads and 16 for entire reads were applied. The “assemble” function was used to assemble paired reads into contigs. Then, the “extract” function was used to capture only the reference sequence set of nuclear proteins contained in the “Mega353” file (McLay & al., 2021) from the assemblies. The “align” function aligned the extracted loci using MAFFT’s automatic selection based on the amount of data from complete gene sequences (exons + introns) with flanking upstream and downstream base pairs using the “GF” argument. Paralogs were filtered using “naive” option.
DOI: 10.5281/zenodo.13753159
title: D3.2_20240117_ProbeField_Pre-processed_Spectra_V1

description: Deliverable 3.2 consists of a dataset of pre-processed field spectra. The dataset includes 583 spectra collected by nine EJP Soil Probefield’s partners in eight countries in 214 sampling points. Nine different VNIR spectroradiometers equipped with contact probes were used to collect the spectra (350 – 2500 nm). Each spectrum corresponds to the average reflectance of five repetitions .

Soil samples were collected from each sampling point and brought to the laboratory for determining the organic content (TOC). The raw spectra were reduced in the range between 400 and 2450 to remove the spectrum tails usually containing noisy signal and the following spectral pre-treatments and transformation were applied:



1.      Spline interpolation of the values of the edges of the middle sensor to correct steps

2.      Savitzky-Golay smoothing filter using a second polynomial order and a window of 11 nm

3.      Detrending spectral data by applying a SNV transformation

4.      Spectral alignment applying a different correction factor for each spectroradiometer using the Lucky Bay sands as internal soil standard

5.   The spectra were further transformed using the External Parameter Orthogonalization (EPO) matrix obtained from DT_EPO.csv to remove the effects of soil moisture


Therefore, three different datasets were extracted:



a      D3.2_20240117_ProbeField_Preprosessed_Spectra_DT_raw.csv: data extracted at the end of point 3

b     D3.2_20240117_ProbeField_Preprosessed_Spectra_DT_ISS.csv: data extracted at the end of point 4

c      D3.2_20240117_ProbeField_Preprosessed_Spectra_DT_EPO.csv: data extracted at the end of point 5


 
description: The main funder for the data collected in D3.2 is the Europe Union's Horizon 2020 research and innovation programme  in the framework of EJP SOIL project. Grant Agreement NO 862695.

Secondary funders are:



MRV4SOC project funded by EU under Grant Agreement NO 10111274 for the Italian data collected by CREA

Region Västra Götaland, RUN 2021-00020 for swedish data collected by SLU

IIESS - Azioni agroecologiche innovative per rigenerare i suoli producendo un Impatto Economico, Sociale e Sostenibile”  - PSR Toscana misura 16.2 for the italian data collected by CNR
DOI: 10.5281/zenodo.15067214
title: 10x genomics cell ranger outputs for Berkovich et al. manuscript

description: 10x genomics cell ranger outputs (single-cell RNA sequencing of cerebrospinal fluid cells) for Berkovich et al. manuscript about natalizumab treatment gap.

A is before gap, B is after gap. For details please see the manuscript.