cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fgc9hx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lycosa suzukii Yaginuma, 1960",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0224401-220831081235567/datasets/export for details.
DOI: 10.15468/dl.23qanu
title: Occurrence Download

description: A dataset containing 333 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Living Specimen, Fossil, Specimen, Material citation, Material sample)",
 "Geometry POLYGON((-45 71.92471,-94.2 56.79639,-95.4 24.18551,-53.4 -17.9609,-69 -49.97082,-87 -77.91371,10.2 -84.05353,-45 71.92471))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Zygochlamys patagonica (P.P.King, 1832)"
 ]
}

 The dataset includes 333 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0174884-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n8msk6
title: Occurrence Download

description: A dataset listing the 9 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-78.12987 1.29741,-78.1278 1.2371,-78.02753 1.25226,-78.04131 1.30878,-78.12987 1.29741))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Amphibia"
 ]
}

 The dataset's 9 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0174901-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5xweqe
title: Occurrence Download

description: A dataset containing 3788 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus sphacelatus Rottb."
 ]
}

 The dataset includes 3788 records from 219 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011803-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.39xe7z
title: Occurrence Download

description: A dataset containing 11645 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus squarrosus L."
 ]
}

 The dataset includes 11645 records from 398 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011805-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jw8vnh
title: Occurrence Download

description: A dataset containing 12900 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potamogeton praelongus Wulfen"
 ]
}

 The dataset includes 12900 records from 385 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011804-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j7f7uq
title: Occurrence Download

description: A dataset containing 15983 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus strigosus L."
 ]
}

 The dataset includes 15983 records from 274 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011807-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48505/nims.4473
title: Electrodeposited copper film data

description: The five types of surface roughness of the electroplated copper films was measured using a white light interferometer (Ametek). Each electrodeposited copper film was obtained via constant-current electrolysis in copper sulfate bath. The concentrations of sulfuric acid (H2SO4) and copper sulfate (CuSO4) were in the ranges of 20–180 g/L and 140–220 g/L, respectively. Standard additives for copper sulfate bath (JCU, CU-BRITE_RF) and 50 ppm chloride ions were introduced into the bath to ensure the stable formation of the electrodeposited copper film. A 70 mm × 70 mm sized masked copper plate was used as the working electrode and a Ti-coated mesh was used as the counter electrode. The electrodeposition time was controlled such that the total capacity was 8.1 C/cm2.
DOI: 10.15468/dl.8vf6wv
title: Occurrence Download

description: A dataset containing 532 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Isopora Studer, 1879"
 ]
}

 The dataset includes 532 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011808-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ak87wh
title: Occurrence Download

description: A dataset containing 1842 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus tenuispica Steud."
 ]
}

 The dataset includes 1842 records from 153 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011809-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17189/1519682
title: GO JUP PWS REFORMATTED REALTIME SPECTRUM ANALYZER FULL V1.0
DOI: 10.17632/38rfykj6bp.2
title: List of metabolites from rat myocardium tissues in both MTX treated and untreated conditions

description: Cardiotoxicity is a well-established adverse effect of several drugs across multiple therapeutic indications. It is particularly prevalent following anticancer therapy. In order to evaluate the changes in metabolism associated with cardiotoxicity, we treated Wistar rats with a single high dose of methotrexate, and after five days, the animals were sacrificed. We then analyzed the cardiotoxicity parameters in serum and cardiac tissue with the goal of identifying a metabolic signature of cardiotoxicity using discovery-based metabolomics. 

The results showed a total of 95 metabolites that were found to be significantly (p < 0.05) modulated: either up- or downregulated in the HDMTX-treated group when compared with the control group. Based on these metabolites, it was found via integrated pathway analysis that a majority of the metabolites were associated with many important cardiac tissue metabolic pathways, such as the malate aspartate shuttle, taurine and hypotaurine metabolism, betaine metabolism, spermidine and spermine biosynthesis, and homocysteine degradation. Among them, L-arginine, homocysteine, and betaine were significantly upregulated, suggesting their role in cardiac tissue injury. The metabolic signature of toxicity may offer a novel approach to the prediction of elevated betaine levels as the novel biomarker for cardiotoxic potential due to HDMTX cardiac toxicity.
DOI: 10.17882/53034
title: Volume backscattering strength samples and echograms (38 kHz) associated to small pelagic fish schools in the Gulf of California, Mexico

description: Sv (dB re m-1) data samples taken from fish schools and their surrounding echoes in echograms associated to small pelagic fish in the Midriff Islands Region of the Gulf of California, Mexico. Acoustic data was acquired using a SIMRAD EK60 scientific echosounder with a 38 kHz split-beam transducer during May, 2013. Two files are provided, the data itself (Sv samples and three echograms) and the R-code needed to recreate figures and analysis in López-Serrano et al. 2017 (https://doi.org/10.1051/alr/2017048). File description: - LopezSerrano_et_al_code.R Ascii file (encoding UTF-8) with the R-code for re-creating the figures and analysis in the paper. - LopezSerrano_et_al_data.RData Binary RData file with all the data used in the paper. Once loaded in R, it contains 4 objects: A table (data frame) and three echograms. The first table contains nine columns: id, x, y, pingNumber, pingTime, depth, Sv038, trawlNo, category The echograms (eco.L04, eco.L14, eco.L17) are objects of class “echogram”, which are described below according to the R package echogram: An object of class “echogram” (a list) with components: depth : a vector of mean sample depth (in m) of length p. Sv : a p by k matrix of sampled values, currently the mean volume backscattering strength (Sv, in dB). pings : a k by four data frame with ping time, detected bottom depth, vessel speed and cummulated traveled distance.
DOI: 10.18112/openneuro.ds004146.v1.0.4
title: Queensland Twin Adolescent Brain (QTAB)
DOI: 10.18112/openneuro.ds004169.v1.0.6
title: Queensland Twin IMaging (QTIM)
DOI: 10.25318/9810001501-eng
title: Population and dwelling counts: Canada, provinces and territories, census subdivisions and dissemination areas

description: This table presents the 2021 population and dwelling counts, land area and population density for dissemination areas by a selected province or territory.
DOI: 10.4121/caa059d2-7657-4301-a805-767e9ca98eab
title: Supporting data for: "Iterative modal reconstruction for sparse particle tracking data"

description: The dataset in this repository complements the publication: Adrian Grille Guerra, Andrea Sciacchitano, Fulvio Scarano; Iterative modal reconstruction for sparse particle tracking data. <em style="color:rgb(26, 26, 26);">Physics of Fluids</em> 1 July 2024; 36 (7): 075107. https://doi.org/10.1063/5.0209527. The dataset contains the electronic supplementary material also available in the online version of the journal (three videos), a digital version of the figures of the publication in Matlab figure format, the full dataset discussed in the publication and also a sample code of the proposed methodology.
DOI: 10.48324/dandi.000472/0.240625.0454
title: NeuroPAL volumetric images

description: Partially labeled NeuroPAL volumetric images produced by the Kato lab at UCSF as part of an effort to add to the corpus of existing labeled data to facilitate the development of automatic cell identification algorithms. We hope that making these datasets more easily accessible in a centralized location like DANDI will significantly speed up development by allowing new researchers to start working on algorithms without the need to build up their own full dataset of training data beforehand. 

As part of this effort, we also propose a novel extension to the NWB data format to allow for multichannel volumetric data.

Contents:

Subject (C. elegans subject) - contains relevant metadata about the experimental subject

Acquisition, "NeuroPALImageRaw" (MultiChannelVolume) - contains the raw image and associated metadata with dimensions (X, Y, Z, C)

Processing,  "NeuroPAL", "VolumeSegmentation" (VolumeSegmentation) - contains a list of neuron centers and associated IDs (X, Y, Z, weight, ID)

Processing, "NeuroPAL", "ImagingVolume" (ImagingVolume) - contains the metadata associated with the imaging acquisition

Processing, "NeuroPAL", "OpticalChannelRefs" (OpticalChannelReferences) - contains the order of the optical channels in the image

Processing, "ProcessedImage", "Hist_match_med_filt" - contains the processed NeuroPAL image with dimensions (X,Y,Z,C)
DOI: 10.48324/dandi.000541/0.240625.0452
title: NeuroPAL Microfluidic Chip Images and GCaMP activity

description: NeuroPAL Microfluidic chip images and GCaMP activity from "NeuroPAL: A Multicolor Atlas for Whole-Brain Neuronal Identification in C. elegans" and "Extracting neural signals from semi-immobilized animals with deformable non-negative matrix factorization."
DOI: 10.48324/dandi.000565/0.240625.0439
title: C. elegans whole-brain neuroPAL and immobilized calcium imaging

description: All of the datasets here contain neuroPAL whole-brain structural images. A subset of these files also contain unstimulated calcium imaging data from the worm immobilized in a micro fluidic chip. Each dataset has ~30-50% of neuron centers labeled with cell IDs.
DOI: 10.48324/dandi.000692/0.240402.2118
title: Whole-brain spontaneous GCaMP activity with NeuroPAL cell ID information of semi-restricted worms

description: Spontaneous neuronal activities were extracted from GCaMP and tagRFP images, covering nearly all neurons in the nematode C. elegans brain. Cell segmentation and tracking were performed using 3DeeCellTracker (https://github.com/WenChentao/3DeeCellTracker). Neuronal identity information was derived from NeuroPAL signals with the NeuroPAL Auto-ID software (https://www.yeminilab.com/neuropal) and manual corrections. During the data acquisition, worms were semi-restricted in a microfluidic device (https://www.nature.com/articles/nature06292). Note: There are occasional transient failures in neuronal tracking. We recommend researchers to use a moving median filter (e.g., ±3) on the time series data to address this issue.
DOI: 10.48324/dandi.000714/0.240611.1954
title: Segmented and labeled NeuroPAL structural images

description: Segmented and labeled NeuroPAL datasets from "Graphical-model framework for automated annotation of cell identities in dense cellular images" by Shivesh Chaudhary, et al.
DOI: 10.48324/dandi.000715/0.240614.1942
title: NeuroPAL: Atlas of C. elegans neuron locations and colors in NeuroPAL worm

description: 10 original NeuroPAL datasets used to train the statistical atlas in 'Statistical Atlas of C. elegans Neurons' and 'NeuroPAL: A Multicolor Atlas for Whole-Brain Neuronal Identification in C. elegans.
DOI: 10.48324/dandi.000776/0.240625.0022
title: Brain-wide representations of behavior spanning multiple timescales and states in C. elegans

description: Dataset of 38 worms from 'Brain-wide representations of behavior spanning multiple timescales and states in C. elegans'. Each NWB file contains the NIR bright-field images, GCaMP images, and NeuroPAL structural images, ROI locations and IDs, labeled activity traces, and behavioral information.
DOI: 10.5066/f75b01nj
title: Spatial data for estimating whooping crane migration corridor

description: The whooping crane (Grus americana) is a bird species in North America currently protected under federal endangered species legislation in the United States and Canada. The only self-sustaining and wild population of whooping cranes nests in and around Wood Buffalo National Park near the provincial border of Northwest Territories and Alberta, Canada. Cranes from this population migrate through the Great Plains of North America and winter along the Gulf Coast of Texas at Aransas National Wildlife Refuge and surrounding lands. These data support efforts to delineate a migration corridor for this population that can be used for conservation planning activities, including targeting conservation, mitigation, and recovery actions and assessing threats.
DOI: 10.5281/zenodo.10662712
title: Dataset of 'Field Line Curvature (FLC) Scattering in the Dayside Off-Equatorial Minima Regions'

description: The data used for each figure in the paper ('Field Line Curvature (FLC) Scattering in the Dayside Off-Equatorial Minima Regions') are publicly available.
DOI: 10.6075/j0w37t8q
title: California Smokers Cohort (CSC). In California Tobacco Survey (CTS)

description: The California Smokers' Cohort (CSC) is a continuation of a series of triennial surveys, called the California Tobacco Survey (CTS), conducted from 1990 to 2008. The previous CTS is a series of cross-sectional studies to collect information about tobacco use and behaviors among Californians. In 2011, the survey design was modified to survey only smokers, and moreover to perform longitudinal surveys to investigate factors associated with quitting behavior.
DOI: 10.34740/kaggle/dsv/9060693
title: Football Players Datasets 2015 - 2024
DOI: 10.6084/m9.figshare.25857265
title: High-quality Chromosomal-Level Genome Assembly of the Wasabi (<i>Eutrema japonicum</i>) ‘Magic’

description: Wasabi (<i>Eutrema japonicum</i>) is a plant in the Brassicaceae family that produces its distinctive pungent taste through allyl isothiocyanate. This study achieved a high-quality chromosome-level genome assembly of the <i>E. japonicum</i> 'Magic,' bred in Korea for its rapid growth cycle. The assembly was accomplished using a combination of Illumina, PacBio HIFI, Nanopore MinION, and Pore-C scaffolding technologies. The final assembled genome size is 794.6 Mb, anchored to 14 chromosomes. The genome comprises 65.17% repetitive elements and has a BUSCO score of 99.3%, indicating a high level of completeness. Compared to previously published assemblies, the total length increased by approximately 48.08 Mb, while the number of Ns decreased from 89,000 to 49,000, and the assembly gaps (500N padding) reduced from 178 to 98, resulting in a higher quality assembly. This genome will be a valuable resource for genetic and biological research on <i>E. japonicum</i>, aiding in its breeding and genetic improvement.
DOI: 10.6084/m9.figshare.25857265.v2
title: Eutrema japonicum 'Magic' genome assembly & annotation

description: Wasabi (<i>Eutrema japonicum</i>) is a plant in the Brassicaceae family that produces its distinctive pungent taste through allyl isothiocyanate. This study achieved a high-quality chromosome-level genome assembly of the <i>E. japonicum</i> 'Magic,' bred in Korea for its rapid growth cycle. The assembly was accomplished using a combination of Illumina, PacBio HIFI, Nanopore MinION, and Pore-C scaffolding technologies. The final assembled genome size is 794.6 Mb, anchored to 14 chromosomes. The genome comprises 65.17% repetitive elements and has a BUSCO score of 99.3%, indicating a high level of completeness. Compared to previously published assemblies, the total length increased by approximately 48.08 Mb, while the number of Ns decreased from 89,000 to 49,000, and the assembly gaps (500N padding) reduced from 178 to 98, resulting in a higher quality assembly. This genome will be a valuable resource for genetic and biological research on <i>E. japonicum</i>, aiding in its breeding and genetic improvement.
DOI: 10.15468/dl.hzwpjd
title: Occurrence Download

description: A dataset containing 331 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepiceridae"
 ]
}

 The dataset includes 331 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042270-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.crhc9v
title: Occurrence Download

description: A dataset containing 9920 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "OccurrenceStatus is Present",
 "TaxonKey is Psammechinus miliaris (P.L.S.Müller, 1771)",
 "Year 1898-2024"
 ]
}

 The dataset includes 9920 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042271-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6dzvrk
title: Occurrence Download

description: A dataset containing 464 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scutigera coleoptrata",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 464 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001810-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4psaeu
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scutigera coleoptrata",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 88 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001812-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rr34wt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scutigera coleoptrata",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001811-250920141307145/datasets/export for details.
DOI: 10.34740/kaggle/dsv/13124170
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.jbuhxw
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scutigera coleoptrata",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001813-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gjypqe
title: Occurrence Download

description: A dataset containing 5932 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((1.26038 53.89407,13.45518 53.89407,13.45518 61.46212,1.26038 61.46212,1.26038 53.89407))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Hemigrapsus takanoi, Hemigrapsus sanguineus, Hemigrapsus penicillatus, Magallana gigas)"
 ]
}

 The dataset includes 5932 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001814-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ezrq57
title: Occurrence Download

description: A dataset containing 1030867 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Human Observation, Observation)",
 "Country is Serbia",
 "Geometry POLYGON((18.0892 46.43857,18.11583 45.75529,18.36883 45.00708,19.12784 44.62926,20.00668 44.30617,20.91215 44.22988,21.76437 44.03875,22.69647 43.86619,23.28237 44.45843,23.09595 44.91286,22.32363 45.345,21.285 45.25133,20.779 45.36371,20.40615 45.55052,19.6871 45.79244,19.50068 46.47527,18.0892 46.43857))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 1901-2025"
 ]
}

 The dataset includes 1030867 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001797-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2cqjur
title: Occurrence Download

description: A dataset containing 162 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acartia tonsa",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 162 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001816-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yhpzuz
title: Occurrence Download

description: A dataset containing 176 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tulipa bifloriformis"
 ]
}

 The dataset includes 176 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001815-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.