cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.18154/rwth-2017-10493
title: Measurement data for paper "Evaluation of Asynchronous Offloading Capabilities of Accelerator Programming Models for Multiple Devices"

description: Aachen : RWTH Aachen, (2018).
description: Accelerator devices are increasingly used to build large supercomputers and current installations usually include more than one accelerator per system node. To keep all devices busy, kernels have to be executed concurrently which can be achieved via asynchronous kernel launches. Our work compares the performance for an implementation of the Conjugate Gradient method with CUDA, OpenCL, and OpenACC on NVIDIA Pascal GPUs. Furthermore, it takes a look at Intel Xeon Phi coprocessors when programmed with OpenCL and OpenMP. In doing so, it tries to answer the question of whether the higher abstraction level of directive based models is inferior to lower level paradigms in terms of performance.This archive contains the modications to liboffload, all binaries and libraries including their respective commit ids, and the raw data of ourmeasurements.
description: Published by RWTH Aachen, Aachen
DOI: 10.5061/dryad.8vn80rv/1
title: Mix_sp_flocks_BDFFP

description: Tracking data for mixed species flocks at the Biological Dynamics of Forest Fragments Project in Brazil. Data is in GPX format. Each file is an aggregate of several days following flocks. Files with (...)_dry_2500(...) are a subsamples from flocks sampled for 100+ hours and only for the dry season. For a comprehensive list of sampling effort, check the supplementary material. Lidar data is split in Canopy height models (CHM) and Digital elevation models (DHM) all in TIF format.
DOI: 10.5281/zenodo.1199496
title: Front-End System2

description: This is the system which uses traditional source separation methods. It's different from system1.
DOI: 10.17632/5x8s3gz7m6.1
title: Data from: Detecting the elusive cost of parasites on fig seed production.

description: Total content data from 52 syconia of Ficus glandifera var. brachysyce. Wasp and seed counts from syconia of Ficus glandifera var. brachysyce. Column headers give codes for wasp morpho species and rows give counts of content. Syconia height and with (mm) are also given.
DOI: 10.17632/v524p5dhpj.1
title: DataSet for Arabic Classification

description: The dataset is a collection of Arabic texts, which covers modern Arabic language used in newspapers articles. The text contains alphabetic, numeric and symbolic words. The existence of numeric and symbolic words in this dataset could tell the efficiency and robustness of many Arabic text classification and indexing documents. The dataset consists of 111,728 documents (cf. Table 1) and 319,254,124 words (cf. Table 2) structured in text files, and collected from 3 Arabic online newspapers: Assabah [9], Hespress [10] and Akhbarona [11] using semi-automatic web crawling process. The documents in the dataset are categorized into 5 classes: sport, politic, culture, economy and diverse. The number of documents and words for each class varies from one class to another (cf. Tables 1-2).
DOI: 10.17632/3696r5jhm4.1
title: QuantumOptics.jl: A Julia framework for simulating open quantum systems

description: We present an open source computational framework geared towards the efficient numerical investigation of open quantum systems written in the Julia programming language. Built exclusively in Julia and based on standard quantum optics notation, the toolbox offers speed comparable to low-level statically typed languages, without compromising on the accessibility and code readability found in dynamic languages. After introducing the framework, we highlight its features and showcase implementations of generic quantum models. Finally, we compare its usability and performance to two well-established and widely used numerical quantum libraries.
DOI: 10.17632/zpbjvy8whp.1
title: RPYFMM: Parallel adaptive fast multipole method for Rotne-Prager-Yamakawa tensor in biomolecular hydrodynamics simulations

description: RPYFMM is a software package for the efficient evaluation of the potential field governed by the Rotne-Prager-Yamakawa (RPY) tensor interactions in biomolecular hydrodynamics simulations. In our algorithm, the RPY tensor is decomposed as a linear combination of four Laplace interactions, each of which is evaluated using the adaptive fast multipole method (FMM) (Greengard and Rokhlin, 1997) where the exponential expansions are applied to diagonalize the multipole-to-local translation operators. RPYFMM offers a unified execution on both shared and distributed memory computers by leveraging the DASHMM library (DeBuhr et al., 2016, 2018). Preliminary numerical results show that the interactions for a molecular system of 15 million particles (beads) can be computed within one second on a Cray XC30 cluster using 12,288 cores, while achieving approximately 54% strong-scaling efficiency.
DOI: 10.25386/genetics.5987542
title: Supplement to Dionne et al., 2018

description: Table S1: 












 Hemidriver lines
DOI: 10.17632/3pgbsjy4vf.1
title: The PSML format and library for norm-conserving pseudopotential data curation and interoperability

description: Norm-conserving pseudopotentials are used by a significant number of electronic-structure packages, but the practical differences among codes in the handling of the associated data hinder their interoperability and make it difficult to compare their results. At the same time, existing formats lack provenance data, which makes it difficult to track and document computational workflows. To address these problems, we first propose a file format (PSML) that maps the basic concepts of the norm-conserving pseudopotential domain in a flexible form and supports the inclusion of provenance information and other important metadata. Second, we provide a software library (libPSML) that can be used by electronic structure codes to transparently extract the information in the file and adapt it to their own data structures, or to create converters for other formats. Support for the new file format has been already implemented in several pseudopotential generator programs (including ATOM and ONCVPSP), and the library has been linked with SIESTA and ABINIT, allowing them to work with the same pseudopotential operator (with the same local part and fully non-local projectors) thus easing the comparison of their results for the structural and electronic properties, as shown for several example systems. This methodology can be easily transferred to any other package that uses norm-conserving pseudopotentials, and offers a proof-of-concept for a general approach to interoperability.
DOI: 10.17632/nnxvbg9pbz.1
title: Maxis - A rezoning and remapping code in two dimensional cylindrical geometry

description: This paper presents the new version of our code Maxis (Lin et al., 2011). Maxis is a local rezoning and remapping code in two dimensional cylindrical geometry, which can be employed to address the grid distortion problem of unstructured meshes. The new version of Maxis is mostly programmed in the C language which considerably improves its computational efficiency with respect to the former Matlab version. A new algorithm for determining the intersection of two arbitrary convex polygons is also incorporated into the new version. Some additional linking functions are further provided in the new version for the purpose of combining Maxis and MULTI2D. The previous version of this program (AEIP_v1_0) may be found at http://dx.doi.org/10.1016/j.cpc.2010.11.034.
DOI: 10.17632/w4nft4459w.1
title: SModelS v1.1 user manual: Improving simplified model constraints with efficiency maps

description: SModelS is an automatised tool for the interpretation of simplified model results from the LHC. It allows to decompose models of new physics obeying a Z2 symmetry into simplified model components, and to compare these against a large database of experimental results. The first release of SModelS, v1.0, used only cross section upper limit maps provided by the experimental collaborations. In this new release, v1.1, we extend the functionality of SModelS to efficiency maps. This increases the constraining power of the software, as efficiency maps allow to combine contributions to the same signal region from different simplified models. Other new features of version 1.1 include likelihood and χ2 calculations, extended information on the topology coverage, an extended database of experimental results as well as major speed upgrades for both the code and the database. We describe in detail the concepts and procedures used in SModelS v1.1, explaining in particular how upper limits and efficiency map results are dealt with in parallel. Detailed instructions for code usage are also provided.
DOI: 10.17632/xm53d23hph.1
title: WiLE: A Mathematica package for weak coupling expansion of Wilson loops in ABJ(M) theory

description: We present WiLE, a Mathematica ® package designed to perform the weak coupling expansion of any Wilson loop in ABJ(M) theory at arbitrary perturbative order. For a given set of fields on the loop and internal vertices, the package displays all the possible Feynman diagrams and their integral representations. The user can also choose to exclude non planar diagrams, tadpoles and self-energies. Through the use of interactive input windows, the package should be easily accessible to users with little or no previous experience. The package manual provides some pedagogical examples and the computation of all ladder diagrams at three-loop relevant for the cusp anomalous dimension in ABJ(M). The latter application gives also support to some recent results computed in different contexts.
DOI: 10.17632/5nzrr2jjpd.1
title: A fast C++ implementation of thermal functions

description: We provide a small C++ library with Mathematica and Python interfaces for computing thermal functions, defined $$J_\text{B/F}(y^2) \equiv \Re \int_0^\infty x^2 \log\left[1 \mp e^{-\sqrt{x^2 + y^2}} \right] \dif{x}$$ which appear in finite-temperature quantum field theory and play a role in phase-transitions in the early Universe, including baryogenesis, electroweak symmetry breaking and the Higgs mechanism. The code is available from https://github.com/andrewfowlie/thermal_funcs.
DOI: 10.17632/r4r67bvkdn.1
title: How to differentiate collective variables in free energy codes: Computer-algebra code generation and automatic differentiation

description: The proper choice of collective variables (CVs) is central to biased-sampling free energy reconstruction methods in molecular dynamics simulations. The PLUMED 2 library, for instance, provides several sophisticated CV choices, implemented in a C++ framework; however, developing new CVs is still time consuming due to the need to provide code for the analytical derivatives of all functions with respect to atomic coordinates. We present two solutions to this problem, namely (a) symbolic differentiation and code generation, and (b) automatic code differentiation, in both cases leveraging open-source libraries (SymPy and Stan Math respectively). The two approaches are demonstrated and discussed in detail implementing a realistic example CV, the local radius of curvature of a polymer. Users may use the code as a template to streamline the implementation of their own CVs using high-level constructs and automatic gradient computation.
DOI: 10.5061/dryad.g8t9240/5
title: Sequencing

description: Raw reads generated for 2bRAD-Seq libraries of 155 samples.  Paired-end reads are available under NCBI BioProject accession PRJNA394157. Only R1 (forward) reads were used for analysis in the manuscript.
DOI: 10.17632/v67mcr4hv2.1
title: Data for: Scumoniliosides A and B, two new flavanone glucuronate esters from Scutellaria moniliorrhiza with anti-inflammatory activities

description: Supporting Information of the paper titled:Scumoniliosides A and B, two new flavanone glucuronate esters from Scutellaria moniliorrhiza with anti-inflammatory activities
DOI: 10.6073/pasta/d09349cc80469d524cab645eddbf6428
title: Toolik Lake Inlet Discharge Data collected summers 2010, 2012 to 2014, Arctic LTER, Toolik Research Station, Alaska.

description: Stream discharge, temperature, and conductivity of Toolik Inlet during the summer of 2010, 2012, 2013, 2014 season.  For 2011 data are problematic and will be posted once the problems are resolved.
DOI: 10.5281/zenodo.1199625
title: System_3

description: SYSTEM_3
DOI: 10.5281/zenodo.1199626
title: System_3

description: SYSTEM_3
DOI: 10.25333/c32906
title: Data Set: From Awareness to Funding: Voter Perceptions and Support of Public Libraries in 2018
DOI: 10.5281/zenodo.1199529
title: Uclh Stroke Eit Dataset Patients - Part 1

description: <strong>The UCLH Stroke EIT Dataset - Patient Data Part 1</strong>

Each folder contains the raw data for patients 1-14.

Full details on the use of these files are given the repository https://github.com/EIT-team/Stroke_EIT_Dataset
DOI: 10.6073/pasta/77c4dd99546992eb74ccc2bd89348516
title: Alberta Bog Net Nitrogen Mineralization, 2013-2015

description: Alberta bogs are subject to periodic wildfire. Although these bogs
  have persisted under low atmospheric nitrogen deposition (less than 2
  kg N/ha/yr), nitrogen deposition in northern Alberta is increasing due
  to ongoing oil sands development. This study examined how time since
  fire and experimental N deposition affects nitrogen mineralization in
  near-surface bog peat. Net nitrogen mineralization (ammonification,
  nitrification, dissolved organic N production) was quantified using
  the buried bag technique in 5 Alberta bogs differing in time since
  fire. At each site, 24 2.4 _ 4.8 m plots were established, with 6
  replicate plots receiving one of four N addition treatments: controls
  (receiving no water or N), H2O controls (receiving water, but no N; 0
  kg N ha-1 yr-1), and 10 and 20 kg N ha-1 yr-1, applied as NH4NO3
  dissolved in 15 L of H2O and applied via backpack sprayer eight times
  during each summer field season. We established plots and began N
  additions in 2011 at the Utikuma Bog site and in 2013 for the other
  four sites. This study is published as: Stuart JEM, Wieder RK, Vile MA
  (2018) Net Nitrogen Mineralization in Alberta Bog Peat is Insensitive
  to Experimentally Increased Nitrogen Deposition and Time Since
  Wildfire. Biogeochemistry, in press.
DOI: 10.5281/zenodo.1199523
title: Uclh Stroke Eit Dataset - Subjects

description: <strong>The UCLH Stroke EIT Dataset - Subject Data</strong>

Each folder contains the raw data for each subject recording.

Full details on the use of these files are given the repository https://github.com/EIT-team/Stroke_EIT_Dataset
DOI: 10.6073/pasta/e4bb378c1f4e29da9a245c035081f1a5
title: Fish captures in lakes of the Arctic LTER region Toolik Field Station Alaska from 1986 to present.

description: This file contains the fish number, recap number, species, lengths, weights, sex and a list of tissues sampled of fish captured in lakes near the Toolik Lake Arctic LTER site during summers from 1986 to present. The file also contains information from gill-netted fish (if any), sacrificed fish, and accidentally killed fish.  All dead fish are included, and if their stomachs and otoliths were taken, that is noted also.
DOI: 10.5281/zenodo.1199660
title: Mh-Crr

description: MH-cr with R
DOI: 10.5281/zenodo.1199661
title: Mh-Crr

description: MH-cr with R
DOI: 10.5281/zenodo.1199659
title: Ws-Cr

description: DIHARD track1 MH-cr system (no R)
DOI: 10.5281/zenodo.1199662
title: Mh-Crr

description: MH-cr with R
DOI: 10.5281/zenodo.1199671
title: Test-Code Quality Assessment Primary Studies

description: Test-code Quality Assessment Primary Studies with their meta-data and extracted data.
DOI: 10.6073/pasta/ac568264470f7eae4fccc8e4988f12e6
title: Habitat selection/Caracolus caracolla and other snails (2016 Ongoing)

description: Various habitat characteristics are presented, as well as the apparency of common plant taxa at 7 heights (every 0.5 m from ground level to 3 m). The files are divided because variables measured varied by year. This is Version 2016 of these data.
DOI: 10.6073/pasta/1bf29fe9a889a36cbda58340d692b487
title: Derived data product for: SBC LTER: Reef: Kelp Forest Community Dynamics: Fish abundance

description: Derived data package:

        
This data package is a reformatted version of "SBC LTER: Reef: Kelp Forest Community Dynamics: Fish abundance", and has been reormatted according to a flexible intermediate data model for ecological community surveys and studies of composition and biodiversity. The data model is named "ecocomDP", for "ecological community design pattern" and was developed by the Environmental Data Initiative.  For more information on the ecocomDP project, contact EDI, or see https://EnvironmentalDataInitiative.org.

        
This data package was derived from the data package: doi:10.6073/pasta/6134f68762279edc58acbc0416501d3e
The abstract below was extracted from this original and is included for context.

      
      
        Original data package abstract
        
  These data describe the abundance and size of fish species as part of
  SBCLTER's kelp forest monitoring program to track long-term patterns
  in species abundance and diversity. This study began in 2000 in the
  Santa Barbara Channel, California, USA, and the dataset is updated
  periodically throughout the year. The abundance and size of all taxa
  of resident kelp forest fish encountered along permanent transects are
  recorded at nine reef sites located along the mainland coast of the
  Santa Barbara Channel and at two sites on the north side of Santa Cruz
  Island. These sites reflect several oceanographic regimes in the
  channel and vary in distance from sources of terrestrial runoff. In
  these surveys, fish were counted in either a 40x2m benthic quadrat, or
  in the water parcel 0-2m off the bottom over the same area.
DOI: 10.5281/zenodo.1199641
title: Uclh Stroke Eit Dataset - Radiology Data

description: <strong>The UCLH Stroke EIT Dataset - Radiology Reports</strong>

Each folder contains the anonymised radiology data, and clinical reports for all patients in the study. The latest version follows the BIDS structure

Full details on the use of these files are given the repository https://github.com/EIT-team/Stroke_EIT_Dataset

<strong>Version 3 - Latest BIDS version</strong>

<strong>Version 2 - Updated DICOM. Use this version if you wish to use the original DICOM files</strong>

Version 1 - Initial upload
DOI: 10.5281/zenodo.1199630
title: Uclh Stroke Eit Dataset Patients - Part 2

description: <strong>The UCLH Stroke EIT Dataset - Patient Data Part 2</strong>

Each folder contains the raw data for patients 15-26.

Full details on the use of these files are given the repository https://github.com/EIT-team/Stroke_EIT_Dataset
DOI: 10.5281/zenodo.1199677
title: System-J2

description: system j2 - new feats
DOI: 10.5281/zenodo.1199678
title: System-J2

description: system j2 - new feats
DOI: 10.17632/wzyw6gw99j.1
title: Data for: Effect of talker variability on hearing aid benefit with closed word recognition test

description: Closed set word recognition test based on 4 lists of the WAKO test with 47 words. The original set is labelled ST and the multitalker MT.
DOI: 10.5281/zenodo.1199682
title: System-J21

description: system teste 21
DOI: 10.5281/zenodo.1199683
title: System-J21

description: system teste 21
DOI: 10.5281/zenodo.1199684
title: Sys2

description: sys2_031518_1
DOI: 10.5281/zenodo.1199685
title: Sys2

description: sys2_031518_1
DOI: 10.21227/7pm7-re60
title: Brazilian Flights Dataset

description: An integrated dataset containing data on departure and arrival data for Brazilian domestic flights comprising the period from the years 2000 to 2019.Composed of 15,506,069 records of flight data, each containing 51 attributes. The attributes include data regarding the airline, flight, airports, meteorological conditions, and scheduled and real times of departure and arrival.
DOI: 10.5517/ccdc.csd.cc1n3g4c
title: CCDC 1522662: Experimental Crystal Structure Determination

description: Related Article: Weilong Che, Guangfu Li, Jianxu Zhang, Yun Geng, Zhigang Xie, Dongxia Zhu, Zhongmin Su|2018|J.Photochem.Photobiol.A:Chem.|358|274|doi:10.1016/j.jphotochem.2018.03.020
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1n3xxl
title: CCDC 1523120: Experimental Crystal Structure Determination

description: Related Article: Bin Ding, Dian Xue Ma, Hui Min Zhang, Xin Meng, Rong Rong Qiu, Rong Ren, Jie Wu, Xiang Xia Wu, Jian Zhong Huo, Yuan Yuan Liu, Xue Fang Shi|2018|Spectrochim.Acta,Part A|199|110|doi:10.1016/j.saa.2018.03.021
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1n7pl5
title: CCDC 1526737: Experimental Crystal Structure Determination

description: Related Article: Abdolali Alizadeh, Reza Mohammadi, Fahimeh Bayat, Long-Guan Zhu|2018|Tetrahedron|74|2085|doi:10.1016/j.tet.2018.03.015
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1n7r3r
title: CCDC 1526784: Experimental Crystal Structure Determination

description: Related Article: Suchithra Madhavan, Sentaro Okamoto|2018|ChemCatChem|10|2014|doi:10.1002/cctc.201702035
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/s6c3c9cvz7.1
title: Data for: Phase behaviors for the Tetrahydrofurfuryl methacrylate and Poly(tetrahydrofurfuryl methacrylate) in Supercritical Carbon Dioxide

description: 1. The solubilities of tetrahydrofurfuryl methacrylate in supercritical carbon dioxide 2. The solubilities of poly(tetrahydrofurfuryl methacrylate) [P(THFMA)] + tetrahydrofurfuryl methacrylate (THFMA) + carbon dioxide 3. The solubilities of poly(tetrahydrofurfuryl methacrylate) [P(THFMA)] + carbon dioxide + dimethyl ether
DOI: 10.17632/394wckf228.1
title: Data for: Generating Vascular Channels within Hydrogel Constructs using an Economical Open-Source 3D Bioprinter and Thermoreversible Gels

description: CAD files, parts table
DOI: 10.5281/zenodo.1199686
title: Sys4

description: sys4_031518_1
DOI: 10.5281/zenodo.1199687
title: Sys4

description: sys4_031518_1