cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25435936.v1
title: Modified leaf shape contour data

description: This dataset modifies the previously published dataset on leaf contour data below. The coordinates are ordered around the contour and the files have been saved as the *.npy file type for python numpy arrays.Chitwood, Dan (2017). Leaf_coordinates.zip. figshare. Dataset. https://doi.org/10.6084/m9.figshare.5056441.v1
DOI: 10.6084/m9.figshare.27815034.v1
title: NONAN GaitPrint: An IMU gait database of healthy older adults

description: The continued effort to study gait kinematics and the increased interest in identifying individuals based on their gait patterns, could be strengthened by the inclusion of data from older groups. To address this need and complement our previous database on healthy young adults, we present an addition to the Nonlinear Analysis Core (NONAN) GaitPrint database. We offer full-body inertial measurement data during self-paced overground walking on a 200 m indoor track of 41 older adults (56+ years old; 20 men and 21 women; age: 64.7 ± 7.5 years; height: 1.7 ± 0.1 m; body mass: 81.1 ± 17.8 kg) across 18 four-minute trials conducted over two days. The multiple recordings are supported by a range of pre-calculated spatiotemporal variables, a list of each subject’s anthropometrics, notes for each walking trial, and template scripts for easier application of our data to classroom assignments or laboratory research. In addition, a preliminary Bayesian analysis found a range of evidence supporting age-related gait changes between this database and our database on young adults.
DOI: 10.17632/gmg5ygmmv9
title: Anexos Definición de propuesta de valor para una proptech para el análisis de riesgo en arriendo de vivienda en el Valle de Aburrá.

description: Anexos de las entrevistas realizadas para el trabajo de grado.
DOI: 10.6084/m9.figshare.22730534.v2
title: Gene trees

description: <em>*Color coding used in gene trees: Physalacriaceae (green), other Basidiomycota (blue), Ascomycota (red), early diverging fungi (black)</em> <br> <em>*Horizontal transfer events are highlighted by yellow clades</em> <br> This folder contains additional supplementary files (gene trees showing clades with horizontal gene transfer events - Table S4) used in the manuscript: <strong>Genomic innovation and horizontal gene transfer shaped plant colonization and biomass degradation strategies of a globally prevalent fungal pathogen</strong> Neha Sahu, Boris Indic, Johanna Wong-Bajracharya, Zsolt Merényi, Huei-Mien Ke, Steven Ahrendt, Tori-Lee Monk, Sándor Kocsubé, Elodie Drula, Anna Lipzen, Balázs Bálint, Bernard Henrissat, Bill Andreopoulos, Francis M. Martin, Christoffer Bugge Harder, Daniel Rigling, Kathryn L. Ford, Gary D. Foster, Jasmyn Pangilinan, Alexie Papanicolaou, Kerrie Barry, Kurt LaButti, Máté Virágh, Maxim Koriabine, Mi Yan, Robert Riley, Simang Champramary, Krista L. Plett, Igor V. Grigoriev, Isheng Jason Tsai, Jason Slot, György Sipos, Jonathan Plett, László G. Nagy <em>bioRxiv 2022.11.10.515791; doi: https://doi.org/10.1101/2022.11.10.515791</em>
DOI: 10.6084/m9.figshare.26779543.v6
title: <b>Waterways significantly reduce phosphorus export from cropland to ocean via fertilizer surface runoff</b>

description: Data for the manuscript of ‘Waterways significantly reduce phosphorus export from cropland to ocean via fertilizer surface runoff’. The data generated for the creation of the main maps are provided as .xlsx files, with two drawings corresponding to Figures 2 and 5 in the main text.
DOI: 10.6084/m9.figshare.3567792.v1
title: Appendix B. Statistical estimation and validation of phylogenetic generalized linear mixed models, PGLMMs.

description: Statistical estimation and validation of phylogenetic generalized linear mixed models, PGLMMs.
DOI: 10.17632/4ktbt29z5x
title: Data for: Electric vehicle routing problem considering energy differences of charging stations

description: These benchmark instances can be used for evaluating the electric vehicle routing problems considering energy differences of charging stations. There are three distinct types of data sets, each describing a separate problem instance. The detailed description of the content of the files can be found in the readme.txt file.
DOI: 10.17632/r46b2sgkkb
title: IntS6 and the Integrator phosphatase module tune the efficiency of select premature transcription termination events. Fujiwara et al.

description: The metazoan-specific Integrator complex catalyzes 3' end processing of small nuclear RNAs (snRNAs) and premature termination that attenuates transcription of many protein-coding genes. Integrator has RNA endonuclease and protein phosphatase activities, but it remains unclear if both are required for complex function. Here, we show IntS6 (Integrator subunit 6) over-expression blocks Integrator function at a subset of Drosophila protein-coding genes, while having no effect on snRNAs or attenuation of other loci. Over-expressed IntS6 titrates protein phosphatase 2A (PP2A) subunits, thereby only affecting gene loci where phosphatase activity is necessary for Integrator function. IntS6 functions analogous to a PP2A regulatory B subunit as over-expression of canonical B subunits, which do not bind Integrator, are also sufficient to inhibit Integrator activity. These results show that the phosphatase module is critical at only a subset of Integrator regulated genes and point to PP2A recruitment as a tunable step that modulates transcription termination efficiency.
DOI: 10.6084/m9.figshare.12518390.v3
title: Tethys Map Document, mpk file

description: Map file for ArcGIS 10.4 containing all shapefiles and layers for the maps in Ferguson et al. 2020. Published in JGR Planets. Requires an ArcGIS license to open.
DOI: 10.6084/m9.figshare.25499875.v1
title: Alpioniscus_balthasari_trinity_assembly

description: <i>De novo transcriptome</i> of cave terrestrial isopod species <i>Alpioniscus balthasari</i> (Trichoniscidae). Animals were flash-frozen in liquid nitrogen. Total RNA from 3 individuals was isolated using a spin column-based commercial kit and RNA was additionally DNase treated. RNA from 3 individuals were pooled equimolary. A bead-based, poly(A) selection kit was used for the preparation of the libraries and the sequencing was carried out on the Illumina NovaSeq 6000 platform with a read length of 2x150 bb. The raw full-length reads were deposited in the NCBI <i>Sequence Read Archive</i> with the BioProject accession number PRJNA1056448 (Biosamples SAMN39098649, SAMN39098650, SAMN39098651). Species-specific<i> de novo</i> transcriptome was generated using Trinity<sup> </sup>software.
DOI: 10.6084/m9.figshare.27093955.v1
title: Suporting information for Rodríguez-Pastor et al. 2025: Dataset and R codes

description: Suporting information for Rodríguez-Pastor et al. 2025: Dataset and R codes
DOI: 10.6084/m9.figshare.27637647.v1
title: Appendix 5: Initial stepwise panel regression models.

description: Initial stepwise panel regression models of the study.
DOI: 10.6084/m9.figshare.5558494.v1
title: Data Figure 5

description: Observed and predicted profiles of PHO2 and IPS1 under Pi-depletion and repletion conditions
DOI: 10.17632/k7tzmrhr6n
title: MeDiaPQA: A Question-Answering Dataset on Persian Medical Dialogues

description: We present the MeDiaPQA: a question-answering dataset on Persian medical dialogues. This dataset has been gathered under the supervision of ComInSys Lab. In this project, we have extracted a novel dataset from dialogues taking place between doctors and patients to contain 15748 dialogues covering more than 70 specialities.
The mentioned dialogues are in the form of questions and doctors’ multiple-choice answers. We have collected these as 7704 question-answer pairs.
DOI: 10.17632/sspbgctgdr
title: TrapCAD — a program to model magnetic traps of charged particles

description: Abstract A graphical end-user program is presented that can be used to design and study magnetic traps with cylindrical and/or multipole symmetry. Originally it was developed for ECRIS (Electron Cyclotron Resonance Ion Source) designing. However, its usage is not restricted to studying ECRIS fields. It can be used in any case where solenoidal multipole fields have to be calculated, e.g. with other types of ion sources, or beam transport elements at particle accelerators. TrapCAD uses the output of the... Title of program: TrapCAD Catalogue Id: ADDL_v1_0 Nature of problem TrapCAD computes the parameters of a charged particle magnetic trap in cylindrical and/or multipole geometry (that is usually used for several types of ion traps and ion sources) and visualizes the magnetic field line structure. Particle movement simulation inside the trap is also possible. Versions of this program held in the CPC repository in Mendeley Data ADDL_v1_0; TrapCAD; 10.1016/0010-4655(96)00053-7 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.6084/m9.figshare.12931268.v2
title: Imaging Electrophoresis of GFP-actin and RFP-LifeAct cells

description: These files are timelapse images collected after lysis of either MDA-MB-231 GFP-actin cells or U2OS RFP-LifeAct cells in F-actin stabilization lysis buffer. Upon application of an electric field, F-actin migrates to the microwell edge (for both the U2OS and MDA-MB-231 cells), and G-actin electrophoretically injects into the gel for the MDA-MB-231 GFP-actin cells.
DOI: 10.6084/m9.figshare.20337537.v1
title: Data from "Phylogeny and evolution of the genus Cervus (Cervidae, Mammalia) as revealed by complete mitochondrial genomes"

description: Sequences of mitogenomes from the ""Phylogeny and evolution of the genus Cervus (Cervidae, Mammalia) as revealed by complete mitochondrial genomes" in fasta and GenBank formats.
DOI: 10.6084/m9.figshare.21384816.v3
title: Data.xlsx

description: 大鼠血清LDH，CK-MB，cTnI，IL-6，TNF-α，SOD，MAD，ET-1，NO,ROS。
DOI: 10.6084/m9.figshare.26335363.v1
title: The raw increment data, together with the climatic and environmental data, are available for download from the figshare depository (10.6084/m9.figshare.26335363).

description: Original data analysed in Oulehle et al. 2024 "Complex imprint of air pollution in the basal area increments of three dominant European tree species". https://doi.org/10.1016/j.scitotenv.2024.175858
DOI: 10.6084/m9.figshare.6125384.v1
title: Repeatibility of agroindustrial characters in sugarcane in different harvest cycles

description: ABSTRACT In commercial cultivation of sugarcane, knowledge about the repetition of agroindustrial characters is essential to identify long-lived genotypes in production cycles, which when selected, will contribute to the significant increase in productivity. This work evaluated the agroindustrial performance of 16 sugarcane genotypes in the sugarcane microregion Litoral Norte of Pernambuco in four harvest cycles and the regularity in the repetition of characters. The experiment was conducted in the agricultural area of São José sugar mill, Igarassu, state of Pernambuco, Brazil. The experiment was carried out following a randomized block design with four replications. The variables evaluated were: tons of POL per hectare (TPH), tons of cane per hectare (TCH), fiber (FIB), adjusted POL% (PCC), soluble solids content (BRIX), and total recoverable sugar (TRS). The variance analysis detected significant differences among the genotypes along the four harvest seasons, indicating genetic variability and possibility of success in the selection of superior genotypes. Estimates of repeatability coefficient point to regularity in the repetition of agro-industrial characteristics allowing to identify genotypes with the highest longevity. The genotypes SP79-1011, RB863129, RB92579, RB813804, RB982559 e RB982613 presented best agroindustrial performance, and two evaluations based on TPH and TCH characters are enough to select superior genotypes with 90% predictability of their actual values.
DOI: 10.17632/82vzccxb6y
title: Photovoltaic System Thermal Images

description: This article presents a dataset for thermal characterization of photovoltaic systems to identify snail trails and hot spot failures. This dataset has 277 thermographic aerial images that were acquired by a Zenmuse XT IR camera (7-13 μm wavelength) from a DJI Matrice 100 drone (quadcopter). Additionally, our dataset includes the next environmental measurements: temperature, wind speed, and irradiance. The experimental set up consisted in a photovoltaic array of 4 serial monocrystalline Si panels (string) and an electronic equipment emulating a real load. The conditions for images acquisition were stablished in a flight protocol in which we defined altitude, attitude, and weather conditions.
DOI: 10.6084/m9.figshare.12791933.v1
title: c60.xyz

description: Fullerene.xyz
DOI: 10.6084/m9.figshare.14325233
title: Phylogenetic analysis of the salinipostin γ-butyrolactone gene cluster uncovers new potential for bacterial signaling-molecule diversity

description: Supplementary Material for ‘Phylogenetic analysis of the salinipostin γ-butyrolactone gene cluster uncovers new potential for bacterial signaling-molecule diversity’ as published in <i>Microbial Genomics.</i><br>
DOI: 10.6084/m9.figshare.12743762.v1
title: Squeezed by a habitat split: warm ocean conditions and old-forest loss interact to reduce long-term occupancy of a threatened seabird (data and code)

description: The data set and code for our analysis on the effects of warm ocean conditions and old-forest loss on long-term occupancy of the Marbled Murrelet. Consists of the following files:<br>1. Betts_et_al_data.RDataThis is the file containing the data used in all analyses and includes the detection histories and covariates from surveys.<br>2. model.structures.RThis file contains the model structures (combinations of covariates, by name, used in each model) for all 16 models presented in the paper.<br>3. script.modelfitting.model4.example.R This file contains an example, for a single model (model 4 presented in the paper), of the model fitting procedure used.<br>4. script.model.resutls.comparison.R This file contains code for comparing model runs from the code above (#3) to ensure convergence.
DOI: 10.6084/m9.figshare.28485524.v1
title: Gonçalves et al., 2025 – Irradiation experiments

description: Data underlying the irradiation experiments described in "The photochemistry of amino acids produced on the polar cryovolcanic regions of Titan", currently under revision.
DOI: 10.17632/pkvmp4jsxx
title: CO2 geological sequestration in multiscale heterogeneous aquifers: Effects of heterogeneity, connectivity, impurity, and hysteresis

description: Simulations were performed using CMG-GEM. Sample input files as well as results for some cases are given here.
DOI: 10.6084/m9.figshare.10276052.v1
title: VAS and DHEQ data sheet

description: Visual Analogue Scale (VAS) results after evaporative and tactile stimuli. <br>Health-related quality of life results after application of the Dentin Hypersensitivity Experience Questionnaire (DHEQ).
DOI: 10.6084/m9.figshare.3515360.v1
title: Supplement 1. Ecosystem characteristics of 38 Picea mariana stands in interior Alaska that burned in 2004.

description: File List Supplement_1_metadata.txt Supplement_1_data.txt Description Supplement_1_metadata.txt: a description of each variable name contained in Supplement_1_data.txt. Supplement_1_data.txt: Ecosystem characteristics of 38 <i>Picea mariana</i> stands in interior Alaska that burned in 2004. Data includes checksum values for download verification.
DOI: 10.6084/m9.figshare.5306908.v1
title: Test for multicollinearity of Environmental Variables

description: Quantitative comparisons of environmental variables to test for multicollinearity
DOI: 10.6084/m9.figshare.7297565.v1
title: Henry et al., cannabis genetic data (VCF and CSV) for 1409 SNP and 38 highly informative SNPs.

description: Two VCF files containing 1409 SNPs and 38 highly informative SNPs to predict terpenoid expression and inform individual identification in vegetative cannabis accessions
DOI: 10.6084/m9.figshare.21268014.v1
title: Increased nighttime oxidants over China despite widespread decrease across the globe

description: This dataset is used to calculate the simulate the evolution of PNO3 under different NOx emission intensity at a fixed VOC condition.
DOI: 10.17632/242whtdt3m
title: A Twitter Dataset for Monkeypox, May-Dec, 2022

description: The number of Monkeypox infections is increasing around the globe. The world has not recovered from damages caused by COVID-19 pandemic yet, and could not bear another catastrophe. Therefore, it is very important to contain Monkeypox outbreak. This dataset includes 2400202 tweet ids and user ids gathered using Twitter API Academic researcher account and with keywords monkeypox or “monkey pox” or “viruela dei mono” or “variole du singe” or “variola do macoco”. The dataset includes all the geotagged and non-geotagged tweets posted during the Monkeypox outbreak of 2022, from May first to December twenty-fifth, 2022, and from anywhere in the world. Each row in the dataset is associated to a different tweet. The dataset includes two columns, TweetID and AuthorID. TweetID provides the id of the tweet and AuthorID provides the id of the user who posted the tweet. The first row of the dataset is the header.
Twitter is increasingly becoming popular among people for sharing ideas, opinions, concerns, and experiences. Previously, Twitter has successfully been used by researchers in different areas of study. This dataset is made available to researchers to study various aspects of Monkeypox such as trend prediction, stigmatization of minor and marginalized populations, misinformation and fake news detection, and hotspot identification to help control the outbreak.
DOI: 10.17632/dd62d5hyzr
title: The key material properties of ultra-high-performance concrete (UHPC)

description: Four datasets were developed to predict the 28-day compressive strength, 28-day flexural strength, mini-slump spread, and 28-day porosity of Ultra-high-performance concrete (UHPC) for AI-guided auto-discovery of UHPC mixtures. The dataset has 1,228 experimental data covering 24 mix design variables of UHPC. The mix design variables can be grouped into four categories: Category 1: variables of the cementitious systems, Category 2: variables of the reinforcing fibers, and Category 3: size of the test specimens. For more information, please refer to the accompanying research article: Soroush Mahjoubi, Rojyar Barhemat, Weina Meng, Yi Bao, Resources, Conservation & Recycling 189C (2023) 106741.
DOI: 10.17632/hvyhkng5jd
title: Cutaneous Rosai-Dorfman disease: a systematic review and reappraisal of its treatment and prognosis.

description: Cutaneous Rosai Dorfman disease (CRDD) is a rare histiocytic disorder that shows distinctive clinical presentation and prognosis. Sufficient data is currently lacking regarding evidence-based management of CRDD. This systematic review aims to provide a comprehensive overview of CRDD, focusing on treatment approaches and outcomes. PubMed and Scopus databases were searched for studies on CRDD from June 1st, 2013 to May 31st, 2023. Articles describing cases of CRDD confirmed with histological examination were eligible for inclusion. All interventions for CRDD were analyzed. The primary outcome measure was the response of cutaneous lesions to treatment including complete response, partial response , and no response. The secondary outcome measures were mortality rate, relapse rate, and the occurrence of adverse events related to CRDD treatment. Eighty-seven articles describing 118 CRDD cases were eligible for this review, the following file describes each article and case individually as it was gathered from each paper on an SPSS spreadsheet.
DOI: 10.25452/figshare.plus.22344127.v1
title: Metadata for scDrugPrio analysis of individual Crohn's disease (CD) patients' scRNA-sequencing data

description: <b>scDrugPrio: A framework for</b><b> </b><b>the</b><b> </b><b>analysis of single-cell transcriptomics to address multiple problems in precision medicine in immune-mediated inflammatory diseases</b>Ineffective drug treatment is a major problem for many patients with immune-mediated inflammatory diseases (IMIDs). Important reasons are the lack of systematic solutions for drug prioritisation and repurposing based on characterisation of the complex and heterogeneous cellular and molecular changes in IMIDs. In our recent work, we propose a computational framework, scDrugPrio, which constructs network models of inflammatory disease based on single-cell RNA sequencing (scRNA-seq) data. scDrugPrio constructs detailed network models of inflammatory diseases that integrate information on cell type-specific expression changes, altered cellular crosstalk and pharmacological properties for the selection and ranking of thousands of drugs.scDrugPrio was developed using a mouse model of antigen-induced arthritis and validated by improved precision/recall for approved drugs, as well as extensive <i>in vitro, in vivo,</i><i> </i>and <i>in silico</i><i> </i>studies of drugs that were predicted, but not approved, for the studied diseases. Next, scDrugPrio was applied to multiple sclerosis, Crohn’s disease, and psoriatic arthritis, further supporting scDrugPrio through prioritisation of relevant and approved drugs. However, in contrast to the mouse model of arthritis, great interindividual cellular and gene expression differences were found in patients with the same diagnosis. Such differences could explain why some patients did or did not respond to treatment. This explanation was supported by the application of scDrugPrio to scRNA-seq data from eleven individual Crohn’s disease patients. The analysis showed great variations in drug predictions between patients, for example,assigning a high rank to anti-TNF treatment in a responder and a low rank in a nonresponder to that treatment. Application to individual patients indicates scDrugPrio’s potential for personalised network-based drug screening on cellulome-, genome-, and drugome-wide scales. For this purpose, we made scDrugPrio into an easy-to-use R package (https://github.com/SDTC-CPMed/scDrugPrio).<br>This data set includes metadata concerning the analysis of individual Crohn's disease patients' data. Specifically, this data set includes deep count auto encoder (DCA) denonised scRNA-seq matrix as well as clustering outcomes. The CD datasets analysed during the current study are available in the GEO, GSE134809.