cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4121/15022410.v1
title: Data underlying the article: Pan-cancer in silico analysis of somatic mutations in G-protein coupled receptors: The effect of evolutionary conservation and natural variance

description: This repository contains the datasets and source code supporting the conclusions of the manuscript "Pan-cancer in silico analysis of somatic mutations in G-protein coupled receptors: The effect of evolutionary conservation and natural variance". G protein-coupled receptors (GPCRs) form the most frequently exploited drug target family, moreover they are often found mutated in cancer. Here we used an aggregated dataset of mutations found in cancer patient samples derived from the Genomic Data Commons and compared it to the natural human variance as exemplified by data from the 1000 Genomes project. We investigated the location of these mutations across the protein domains and conserved residues in GPCRs such as the “DRY” motif. We subsequently created a ranking of high scoring GPCRs, using a multi-objective approach (Pareto Front Ranking). In conclusion, this study identifies a list of GPCRs that are prioritized for experimental follow up characterization to elucidate their role in cancer. The computational approach here described can be adapted to investigate the roles in cancer of any protein family.
DOI: 10.6084/m9.figshare.14561613.v2
title: Biodiversity_Function data

description: This dataset is used to support the paper "Ding J., Delgado-Baquerizo M., Wang JT., Eldridge D. 2021. Ecosystem functions are related to tree diversity in forests but soil biodiversity in open woodlands and shrublands. Journal of Ecology, https://doi.org/10.1111/1365-2745.13788"<br>We collected data at 126 sites from humid to arid areas in eastern Australia to explore the two-way relationships among aboveground (richness of trees and other plants) and belowground (richness of bacteria, fungi, invertebrate, protist) diversity and multiple ecosystem functions (multifunctionality, carbon and nutrient cycling, decomposition, plant biomass, soil stability).
DOI: 10.6084/m9.figshare.4729732.v1
title: Supplementary Material for: Reactions of Buckwheat-Hypersensitive Patients during Oral Food Challenge Are Rare, but Often Anaphylactic

description: <b><i>Background:</i></b> Buckwheat (BW) is a common cause of life-threatening allergy in Asia. Few have examined oral food challenges (OFCs) using BW. We here describe the OFC outcomes for the diagnosis or confirmation of tolerance acquisition and clarify risk factors for positive OFCs. <b><i>Methods:</i></b> Between July 2005 and March 2014, we retrospectively reviewed data from children who underwent OFCs using 3,072 mg of BW protein at Sagamihara National Hospital. Children were suspected of having BW allergy because of positive results for BW-specific IgE or because they had been previously diagnosed with BW allergy owing to immediate reactions to BW. <b><i>Results:</i></b> Of 476 such patients, we analyzed 419 aged 1-17 years (median age 6.7 years). Forty-four (10.5%) reacted to the BW OFC and 24 (54.5%) experienced anaphylaxis. Among patients with suspected BW allergies (<i>n</i> = 369), 30 (8.1%) reacted to OFC. However, among patients with definitive BW allergies (<i>n</i> = 50) who underwent OFCs a median of 7.0 years after their last immediate reaction, 14 (28.0%) reacted to OFC. Among 12 patients with past anaphylactic reactions to BW, 8 exhibited tolerance to BW. A history of immediate reaction to BW and high BW-specific IgE levels were significant risk factors for a positive OFC. <b><i>Conclusions:</i></b> BW allergies are rare among children suspected of having BW allergies due to positivity for BW-specific IgE. Most children with definitive BW allergies can tolerate BW, even after anaphylactic reactions. Nevertheless, careful observation is needed when performing BW OFCs, considering the high incidence of anaphylactic reactions.
DOI: 10.6084/m9.figshare.23660241.v1
title: Supplementary Material for: Methylation of the glucocorticoid receptor gene (NR3C1) in adolescents with a history of childhood adversity engaging in non-suicidal self-injury

description: Introduction: Non-suicidal self-injury (NSSI) is a large phenomenon among adolescents and adverse childhood experiences (ACE) are a major risk factor in its development. Malfunctioning of the hypothalamus-pituitary-adrenal (HPA) axis has been repeatedly reported for ACE as for NSSI. The glucocorticoid receptor (GR) is essential for the correct functioning of the HPA axis, thus alterations in the expression of the GR through altered methylation of the GR gene (NR3C1) (and more specifically exon 1F) might contribute to the development of NSSI in individuals with a past of ACEs as has been reported for different other mental disorders. Methods: In this case-control study we compared the methylation levels of exon 1F of the GR gene (NR3C1-1F) in adolescents with engagement in NSSI (n = 67) and a healthy control group (HC; n = 47). We preserved buccal swabs and used a mass-spectrometry based method called EpiTYPER for analyzing mean methylation of NR3C1-1F. Results: Adolescents of the NSSI group reported significantly more ACEs.The mean methylation level was about 3 % in both groups with no significant group differences. Furthermore, no significant relation was found between ACE and methylation of NR3C1-1F neither in the overall sample nor in the NSSI or HC group. Discussion/Conclusion: Our results are contradictory to previous research showing an increased methylation in individuals with ACE. Regarding relations between methylation of NR3C1-1F and mental disorders, previous studies reported inconsistent findings. Our study points to NSSI being either unrelated to methylation of NR3C1-1F or to yet not identified moderators on relations between methylation of NR3C1-1F and engagement in NSSI during adolescence.
DOI: 10.6084/m9.figshare.28516910.v1
title: Public Perception about Stray Dogs in Urban Bangladesh: Public Health and Dogs Management Policy

description: This dataset explores public perception regarding stray dogs in urban areas of Bangladesh, focusing on public health concerns and dog management policies. The study examines attitudes towards stray dogs, challenges posed by their presence, and potential strategies for humane population control. Data were collected through surveys and interviews, providing insights into the social, environmental, and policy dimensions of stray dog management. Findings contribute to discussions on public health risks, animal welfare, and the need for effective, community-driven policy interventions.
DOI: 10.17632/p8d75psxk4
title: Data set of Malaysian Undergraduates’ Challenges and Future Preference for E-learning  During the COVID-19 Pandemic

description: This data set contains data on Malaysian undergraduates’ challenges and future preference for e-learning. Challenges for e-learning include infrastructure, training, support and resources, discipline, advantages, disadvantages and learning outcome.
DOI: 10.6084/m9.figshare.28524053.v1
title: <b>The Prevalence Of Intraventricular Hemorrhage And Its Related Risk Factors Among Preterm Neonates</b>

description: <b>Introduction:</b>Intraventricular hemorrhage (IVH) is a serious concern for preterm infants and can predispose such infants to brain injury and poor neurodevelopmental outcomes.<b>Aim:</b>The present study aimed to determine the frequency of IVH and its risk factors in the premature newborns admitted to the Neonatal Intensive Care Unit (NICU). <b>Methodology:</b>This cross-sectional study involved 201 preterm neonates admitted at Khobar, University Hospital, Saudi Arabia over a period of 7 years (from 2016 to 2023). These neonates were diagnosed by cranial ultrasound. IVH was classified into four grades based on Papile classification. The frequency of IVH was compared across various attributing factors i.e., gestational age at delivery, gender, birth weight, mode of delivery, and maternal antenatal steroids.<b>Results</b>Two hundred and one patients were analyzed (male 50.7% vs. female 49.3%). 51.2% had a gestational age of 29 weeks or less. 54.2% had a birth weight of ≤1200g. The incidence of IVH in a 7-year duration was 41.8%, with stage 1 (41.7%) and stage 2 (34.5%) being the most common IVH stages. Multivariate regression analysis revealed that CHD, seizure, and ROP were identified as the significant predictors of IVH among preterm infants.<b>Conclusion:</b>IVH in premature infants remains a complex and delicate issue in neonatology. An integrated approach covering both prevention and treatment is essential to minimize the negative impact of this complication on the neurological development of premature infants.
DOI: 10.6084/m9.figshare.3525101.v1
title: Appendix A. A table showing results of transient storage modeling.

description: A table showing results of transient storage modeling.
DOI: 10.6084/m9.figshare.5288323.v1
title: Number of identified specimens according to element for gazelle and caprines from Expansion of the known distribution of Asiatic mouflon (Ovis orientalis) in the Late Pleistocene of the Southern Levant

description: Number of identified specimens for the main skeletal elements of gazelle and caprines
DOI: 10.6084/m9.figshare.14992071.v1
title: Lo_Human_Sleeve_SuppTable02.xlsx

description: <b>Supplementary Table 2.</b> Forward and reverse quantitative polymerase chain reaction (qPCR) primers for measuring the expression of six candidate genes of interest (<i>ID1</i>, <i>IFNE</i>, <i>IGF2</i>, <i>MMP15</i>, <i>PDPK2P</i>, <i>SLCO2A1</i>) related to surgical weight loss. Ubiquitin C was used as a housekeeping gene for comparison.<br>
DOI: 10.6084/m9.figshare.22047299.v3
title: What happens to the inhibitory control functions of the right inferior frontal cortex when this area is dominant for language?

description: Structural (VBM), functional (fMRI) and behavioral data relative to the research article "<b>What happens to the inhibitory control functions of the right inferior frontal cortex when this area is dominant for language?</b>"
DOI: 10.17632/w5tr94m9pc
title: Revolutionizing Homestays: The Power of Guest Online Reviews in China's Tourism Industry

description: Research Hypothesis
The study posits that guest online reviews significantly impact customer satisfaction and engagement in the homestay sector in China. Specifically, it hypothesizes:

Service Quality and Customer Satisfaction: The quality of service, as perceived through online reviews, is positively associated with customer satisfaction.
Guest Feedback and Service Quality: Customer feedback in online reviews has a positive effect on perceived service quality.
Management Responses and Service Quality: The way homestay management responds to online reviews influences the perceived service quality.
Decision-Making Process: The decision-making process of customers, influenced by online reviews, affects their satisfaction and engagement with the homestay.
Data and Collection
The data was collected through a survey of 463 participants involved in the homestay and tourism industry. The participants' feedback was analyzed using quantitative methods, including SPSS for correlation analysis and PLS-SEM for testing structural equation models. The data primarily comes from key rural tourism villages in China, ensuring a comprehensive and authoritative sample.

Key Findings
Impact on Service Quality: Guest online reviews significantly affect the perceived quality of service in homestays. Positive reviews enhance customer satisfaction, while negative reviews highlight areas for improvement.
Role of Management Responses: Effective management responses to reviews—acknowledging feedback and making necessary improvements—positively influence future customer perceptions and satisfaction.
Customer Decision-Making: The decision-making process is greatly influenced by previous customer reviews, affecting booking decisions and overall satisfaction.
Customer Engagement and Loyalty: Higher customer satisfaction leads to increased engagement behaviors, such as leaving positive reviews, which in turn fosters brand loyalty.
Interpretation and Use of Data
For Homestay Operators: The study suggests that homestay operators should actively manage and respond to online reviews to improve service quality and customer satisfaction. This includes addressing negative feedback and highlighting positive experiences.
For Marketers: Marketers can use the insights from online reviews to tailor their communication strategies, focusing on the strengths highlighted by satisfied customers and addressing common complaints.
For Researchers: The study fills a gap in understanding the impact of e-WOM (electronic word-of-mouth) in the homestay sector, particularly in the context of developing countries like China.
The findings emphasize the critical role of guest online reviews in shaping customer perceptions and behaviors in the homestay industry, underscoring the importance of managing online reputations effectively.
DOI: 10.6084/m9.figshare.6858023.v1
title: Native species exploited by marine aquarium trade in Brazil

description: Abstract: Brazil has an important role in marine ornamental trade, exploiting native species for both international and domestic market. A few works have previously assessed wild species exploited by the Brazilian marine aquarium industry and most of them focused solely on fish. Hence, the present paper intends to address an information gap regarding the species currently traded in the country, as well as concerning their conservation statuses. Thus, different sources of information were investigated and each species was categorized in accordance with existing lists of threatened species. A wide variety of native species was identified in Brazilian marine aquarium trade, including not only fish but also invertebrates, seaweeds and macrophytes. Some of these species were legally protected, but are still commerced anyway. Such illegal exploitation of native species causes increasing concerns about the sustainability of the activity. Therefore, in order to reduce environmental impacts caused by marine ornamental trade, Brazilian authorities should encourage the implementation of eco-fees, the purchase of eco-labeled aquarium products, the development of sustainable ornamental aquaculture and ecosystem-based management initiatives.
DOI: 10.17632/c4xj5rv6kv
title: Raster Circumpolar Arctic Vegetation Map

description: Authors: Martha K. Raynolds, Donald A. Walker, Andrew Balser, Christian Bay, Mitch Campbell, Mikhail M. Cherosov, Fred J. A. Daniëls, Pernille Bronken Eidesen, Ksenia A. Ermokhina, Gerald V. Frost, Birgit Jedrzejek, M. Torre Jorgenson, Blair E. Kennedy, Sergei S. Kholod, Igor A. Lavrinenko, Olga V. Lavrinenko, Borgþór Magnússon, Nadezhda V. Matveyeva, Sigmar Metúsalemsson, Lennart Nilsen, Ian Olthof, Igor N. Pospelov, Elena B. Pospelova, Darren Pouliot, Vladimir Razzhivin, Gabriela Schaepman-Strub, Jozef Šibík, Mikhail Yu. Telyatnikov, Elena Troeva.

Land cover maps are the basic data layer required for understanding and modeling ecological patterns and processes. The Circumpolar Arctic Vegetation Map (CAVM), produced in 2003, has been widely used as a base map for studies in the arctic tundra biome. However, the relatively coarse resolution and vector format of the map were not compatible with many other data sets. We present a new version of the CAVM, building on the strengths of the original map, while providing a finer spatial resolution, raster format, and improved mapping. The Raster CAVM uses the legend, extent and projection of the original CAVM. The legend has 16 vegetation types, glacier, saline water, freshwater, and non-arctic land. The Raster CAVM divides the original rock-water-vegetation complex map unit that mapped the Canadian Shield into two map units, distinguishing between areas with lichen- and shrub-dominated vegetation. In contrast to the original hand-drawn CAVM, the new map is based on unsupervised classifications of seventeen geographic/floristic sub-sections of the Arctic, using AVHRR and MODIS data (reflectance and NDVI) and elevation data. The units resulting from the classification were modeled to the CAVM types using a wide variety of ancillary data. The map was reviewed by experts familiar with their particular region, including many of the original authors of the CAVM from Canada, Greenland (Denmark), Iceland, Norway (including Svalbard), Russia, and the U.S. The analysis presented here summarizes the area, geographical distribution, elevation, summer temperatures, and NDVI of the map units. The greater spatial resolution of the Raster CAVM allowed more detailed mapping of water-bodies and mountainous areas. It portrays coastal-inland gradients, and better reflects the heterogeneity of vegetation type distribution than the original CAVM. Accuracy assessment of random 1-km pixels interpreted from 6 Landsat scenes showed an average of 70 % accuracy, up from 39 % for the original CAVM. The distribution of shrub-dominated types changed the most, with more prostrate shrub tundra mapped in mountainous areas, and less low shrub tundra in lowland areas. This improved mapping is important for quantifying existing and potential changes to land cover, a key environmental indicator for modeling and monitoring ecosystems.
DOI: 10.17632/2tn2yxj4dm
title: Data for: 3D Phase-Field simulations to machine-learn 3D information from 2D micrographs

description: Supplementary material for experimental inputs utilized in paper "3D Phase-Field simulations to machine-learn 3D information from 2D micrographs"
DOI: 10.6084/m9.figshare.28861061.v2
title: Maternal_Infant_Transfer_of_SARS_CoV_2_Antibodies

description: This article discusses the results of a study conducted on the transfer of SARS-CoV-2 antibodies to an infant through gestation and lactation.
DOI: 10.6084/m9.figshare.8059307.v2
title: Supplementary Material for: Passive Monitoring at Home: A Pilot Study in Parkinson Disease

description: We conducted a pilot study using a passive radio-wave-based home monitor in individuals with Parkinson disease (PD) with a focus on gait, home activity, and time in bed. We enrolled 7 ambulatory individuals to have the device installed in the bedroom of their homes over 8 weeks and performed standard PD assessments at baseline. We evaluated the ability of the device to objectively measure gait and time in bed and to generate novel visualizations of home activity. We captured 353 days of monitoring. Mean gait speed (0.39–0.78 m/s), time in bed per day (4.4–12.1 h), and number (1.4–5.9) and duration (15.0–49.8 min) of nightly awakenings varied substantially across and within individuals. Derived gait speed correlated well with the Movement Disorder Society-Unified Parkinson’s Disease Rating Scale total (<i>r</i> = –0.88, <i>p</i> = 0.009) and motor sub-score (<i>r</i> = –0.95, <i>p</i> = 0.001). Six of the seven participants agreed that their activity was typical and indicated a willingness to continue monitoring. This technology provided promising new insights into the home activities of those with PD and may be broadly applicable to other chronic conditions.
DOI: 10.6084/m9.figshare.8080766.v1
title: Data A.1. Concatenated matrix.fasta

description: This dataset includes the concatenated alignment of five genes (18S, 28S, rbcL, psbA and COI) and 100 strains belonging to the marine diatom family Chaetocerotaceae. It is linked to the paper by De Luca D, Sarno D, Piredda R, Kooistra WHCF. "A multigene phylogeny to infer the evolutionary history of Chaetocerotaceae (Bacillariophyta)".<b></b>
DOI: 10.21942/uva.10007840.v2
title: The Amsterdam Ultra-high field adult lifespan database (AHEAD): A freely available multimodal 7 Tesla submillimeter magnetic resonance imaging database

description: The <strong>A</strong>msterdam Ultra-<strong>h</strong>igh fi<strong>e</strong>ld <strong>a</strong>dult lifespan<strong> d</strong>atabase (AHEAD) consists of 105 7 Tesla (T) whole-brain structural MRI scans tailored specifically to imaging of the human subcortex, including both male and female participants and covering the entire adult life span (19-80 yrs). Data was acquired at a submillimeter resolution using a single multi-echo magnetization-prepared rapid gradient echo (MP2RAGEME) sequence, resulting in complete anatomical alignment of quantitative, R<sub>1</sub>-maps, R<sub>2</sub><sup>*</sup>-maps, T<sub>1</sub>-maps, T<sub>1</sub>-weighted images, T<sub>2</sub><sup>*</sup>-maps, and quantitative susceptibility mapping (QSM). Probability maps were created for five individual basal ganglia structures.
DOI: 10.6084/m9.figshare.23798394.v2
title: <b>Quantitative galactose colorimetric competitive assay based on galactose dehydrogenase and plasmonic gold nanostars.</b>

description: The goal of this research was to develop a quantitative galactose colorimetric detection platform that uses plasmonic gold nanostars and co-immobilized galactose dehydrogenase and NAD+. In the presence of 0.05 mM H<sub>2</sub>O<sub>2</sub>, the biosensor provided quantified colorimetric signals that were dependent on the analyte concentration.
DOI: 10.17028/rd.lboro.28609112.v1
title: Dataset of Occupant Stereotypes for Building Simulation

description: This dataset contains the occupant stereotypes described in in DEEP Report 6.02 Occupant Stereotypes for Building Simulation which is available here: https://assets.publishing.service.gov.uk/media/6717c03dd94d2c219a540596/6.02_DEEP_Occupant_Stereotypes_Report.pdf.The dataset is made publicly available here. This dataset includes:1. README.txt: A Read Me file with more details of the dataset.2. Dataset_descriptor.pdf: A guidance document containing information on how to use the stereoptypes.3. DEEP_SinglePerson_Low.idf: Occupant related gains in the EnergyPlus format for a household of a single person (low energy use scenario).4. DEEP_SinglePerson_Medium.idf: Occupant related gains in the EnergyPlus format for a household of a single person (medium energy use scenario).5. DEEP_SinglePerson_High.idf: Occupant related gains in the EnergyPlus format for a household of a single person (high energy use scenario).6. DEEP_CoupleWithChildren_Low.idf: Occupant related gains in the EnergyPlus format for a household of a couple with children (low energy use scenario).7. DEEP_CoupleWithChildren_Medium.idf: Occupant related gains in the EnergyPlus format for a household of a couple with children (medium energy use scenario).8. DEEP_CoupleWithChildren_High.idf: Occupant related gains in the EnergyPlus format for a household of a couple with children (high energy use scenario).9. DEEP_RetiredCouple_Low.idf: Occupant related gains in the EnergyPlus format for a household of a retired couple (low energy use scenario).10. DEEP_RetiredCouple_Medium.idf: Occupant related gains in the EnergyPlus format for a household of a retired couple (medium energy use scenario).11. DEEP_RetiredCouple_High.idf: Occupant related gains in the EnergyPlus format for a household of a retired couple (high energy use scenario).12. DEEP_SinglePerson_Low.csv: Occupant related gains for a household of a single person (low energy use scenario).13. DEEP_SinglePerson_Medium.csv: Occupant related gains for a household of a single person (medium energy use scenario).14. DEEP_SinglePerson_High.csv: Occupant related gains for a household of a single person (high energy use scenario).15. DEEP_CoupleWithChildren_Low.csv: Occupant related gains for a household of a couple with children (low energy use scenario).16. DEEP_CoupleWithChildren_Medium.csv: Occupant related gains for a household of a couple with children (medium energy use scenario).17. DEEP_CoupleWithChildren_High.csv: Occupant related gains for a household of a couple with children (high energy use scenario).18. DEEP_RetiredCouple_Low.csv: Occupant related gainsfor a household of a retired couple (low energy use scenario).19. DEEP_RetiredCouple_Medium.csv: Occupant related gains for a household of a retired couple (medium energy use scenario).20. DEEP_RetiredCouple_High.csv: Occupant related gains for a household of a retired couple (high energy use scenario).<br>