cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0202868.10fu
title: SH0202868.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0202869.10fu
title: SH0202869.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0202870.10fu
title: SH0202870.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0202871.10fu
title: SH0202871.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0202872.10fu
title: SH0202872.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0202873.10fu
title: SH0202873.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0202874.10fu
title: SH0202874.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0202875.10fu
title: SH0202875.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.83yuq8
title: Occurrence Download

description: A dataset containing 7223 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Solanum rostratum Dunal",
 "Year 2020-2025"
 ]
}

 The dataset includes 7223 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005127-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10575814
title: Dataset from "Conversion of social organization in fire ants induced by few colony members: unmasking indirect genetic effects"

description: Publication Title:

Conversion of Social Organization in Fire Ants Induced by Few Colony Members: Unmasking Indirect Genetic Effects

 

Journal: 

Proceedings of the National Academy of Sciences

 

Abstract:

Genes and the environment jointly shape individual traits, but the influence of indirect genetic effects (IGEs), arising from the genetic composition of interacting conspecific individuals, is often ignored or underemphasized. Moreover, because of practical challenges in characterizing IGEs, empirical research has fallen behind its theoretical advancement. The fire ant Solenopsis invicta offers a uniquely suitable study system due to its distinct colony-level phenotypic variation (monogyne and polygyne social forms) attributed to IGEs of a social-supergene variant (b allele). A minority of b-carrying workers (Bb genotype) can trigger colony-level conversion from monogyne (single queen per colony) to polygyne (multiple queens per colony) behavior. This study investigated the mechanisms underlying this process via novel 400-ant microcolonies. We first showed that assimilated Bb workers reduce aggression by host BB workers toward Bb queens, thus inducing polygyny, at rates observed earlier in experiments that used full-size (>20,000 ants) colonies. We then demonstrated that social conversion is facilitated by cuticular contact between the worker types, and verified the presence of non-volatile cuticular pheromones that are necessary but not sufficient components underpinning this process. Follow-up experiments suggested that a second, polygyne worker-produced pheromone that is only released once such workers detect a Bb queen is also necessary but again insufficient, for full expression of the conversion phenomenon. Thus, multiple pheromonal components linked to presence of the b supergene allele in colony workers appear to be involved in shaping social environments and thereby inducing, via IGEs, the transformation from monogyne to polygyne fire ant societies.

 

This dataset includes: 

worker_conversion_README.pdf - a README file containing legends to the dataset in this project. 

worker_conversion_main_exp_result.csv  - results from the main experimental set

worker_conversion_behav_data.csv  - raw data from manual tracking of worker-queen interaction in the Positive Reference experiments.    

worker_conversion_deposit.R - R script for processing and visualizing behavioral data from video-based analyses of fire ant worker-queen interactions (worker_conversion_behav_data.csv). The code summarizes time-series data on worker presence and behavior, compares outcomes of queen acceptance versus rejection, and generates statistical tests and figures. 

videos (mp4 files) - selected experimental recordings
DOI: 10.5281/zenodo.10575815
title: Dataset from "Conversion of social organization in fire ants induced by few colony members: unmasking indirect genetic effects"

description: Publication Title:

Conversion of Social Organization in Fire Ants Induced by Few Colony Members: Unmasking Indirect Genetic Effects

 

Journal: 

Proceedings of the National Academy of Sciences

 

Abstract:

Genes and the environment jointly shape individual traits, but the influence of indirect genetic effects (IGEs), arising from the genetic composition of interacting conspecific individuals, is often ignored or underemphasized. Moreover, because of practical challenges in characterizing IGEs, empirical research has fallen behind its theoretical advancement. The fire ant Solenopsis invicta offers a uniquely suitable study system due to its distinct colony-level phenotypic variation (monogyne and polygyne social forms) attributed to IGEs of a social-supergene variant (b allele). A minority of b-carrying workers (Bb genotype) can trigger colony-level conversion from monogyne (single queen per colony) to polygyne (multiple queens per colony) behavior. This study investigated the mechanisms underlying this process via novel 400-ant microcolonies. We first showed that assimilated Bb workers reduce aggression by host BB workers toward Bb queens, thus inducing polygyny, at rates observed earlier in experiments that used full-size (>20,000 ants) colonies. We then demonstrated that social conversion is facilitated by cuticular contact between the worker types, and verified the presence of non-volatile cuticular pheromones that are necessary but not sufficient components underpinning this process. Follow-up experiments suggested that a second, polygyne worker-produced pheromone that is only released once such workers detect a Bb queen is also necessary but again insufficient, for full expression of the conversion phenomenon. Thus, multiple pheromonal components linked to presence of the b supergene allele in colony workers appear to be involved in shaping social environments and thereby inducing, via IGEs, the transformation from monogyne to polygyne fire ant societies.

 

This dataset includes: 

worker_conversion_README.pdf - a README file containing legends to the dataset in this project. 

worker_conversion_main_exp_result.csv  - results from the main experimental set

worker_conversion_behav_data.csv  - raw data from manual tracking of worker-queen interaction in the Positive Reference experiments.    

worker_conversion_deposit.R - R script for processing and visualizing behavioral data from video-based analyses of fire ant worker-queen interactions (worker_conversion_behav_data.csv). The code summarizes time-series data on worker presence and behavior, compares outcomes of queen acceptance versus rejection, and generates statistical tests and figures. 

videos (mp4 files) - selected experimental recordings
DOI: 10.15468/dl.2wngwv
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agrilus sinuatus",
 "Country is Estonia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042148-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4s6zan
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agrilus sinuatus",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042146-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26023/rwbe-y23f-jq08
title: PAN and other Trace Hydrohalocarbon ExpeRiment Data (PANTHER) Mass Selective Detectors (MSD) Data. Version 1.0

description: PANTHER (PAN and other Trace Hydrohalocarbon ExpeRiment) is an in situ 6-channel gas chromatograph (GC) containing a 2-channel Mass Selective Detector (MSD) that was flown aboard the NSF/NCAR GV during HIPPO-4. The dataset contains mixing ratios in NASA Ames format.
DOI: 10.26023/n7d0-1hxv-1s0y
title: Stable Isotopic Composition of Atmospheric Carbon Dioxide (13C and 18O) Data. Version 1.0

description: The files in this archive contain measurements of the stable isotopic composition (13C and 18O) of atmospheric carbon dioxide. The isotopic analyses were carried out at the Stable Isotope Laboratory, CU-INSTAAR, using samples of air collected aboard the NSF/NCAR GV during HIPPO-4.
DOI: 10.15468/dl.qbd657
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Recent evolution of ancient Arctic leech relatives: systematics of Acanthobdellida"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042149-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26023/5v7n-j1kj-4z0p
title: Skew-T Plots: Anchorage. Version 1.0

description: This dataset contains upper air Skew-T Log-P data collected at Anchorage, Alaska during the HIPPO-4 project. The imagery are in GIF format. The imagery cover the time span from 2011-06-08 12:00:00 to 2011-07-13 12:00:00.
DOI: 10.15468/dl.3kamn2
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Buprestis novemmaculata",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 53 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042152-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.768x2f
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Buprestis novemmaculata",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042151-250920141307145/datasets/export for details.
DOI: 10.26023/7n46-3fx0-gc14
title: Skew-T Plots: Barrow. Version 1.0

description: This dataset contains upper air Skew-T Log-P data collected at Barrow, Alaska during the HIPPO-4 project. The imagery are in GIF format. The imagery cover the time span from 2011-06-08 12:00:00 to 2011-07-13 12:00:00.
DOI: 10.26023/a6s0-zze0-m90h
title: OPC North Pacific Surface Analysis Imagery. Version 1.0

description: This dataset contains North Pacific Surface Analysis imagery by OPC produced during the HIPPO-4 project. The imagery are in GIF format. The data covers the time span from 2011-06-08 12:00:00 to 2011-07-13 06:00:00.
DOI: 10.15468/dl.8rncw6
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phaenops cyanea",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 15 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042153-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26023/c9zf-gsgj-8t00
title: HNL Pacific Streamline Analysis Imagery. Version 1.0

description: This dataset contains Pacific streamline analysis around Honolulu produced by KVM-70 U.S. Department of Commerce, NOAA/NWS Honolulu, HI during the HIPPO-4 project. The imagery are in GIF format. The imagery cover the time span from 2011-06-08 12:00:00 to 2011-07-13 06:00:00.
DOI: 10.26023/ny9r-eyxe-1b0b
title: North Pacific Sig Wx Imagery. Version 1.0

description: This dataset contains North Pacific Sig Wx forecasts by NCEP taken during the HIPPO-4 project. The data is in GIF format. The data covers the time span from 2011-06-08 12:00:00 to 2011-07-13 18:00:00.
DOI: 10.15468/dl.avx872
title: Occurrence Download

description: A dataset containing 1124857 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2025-08-07",
 "EventDate is less than or equal to 2025-09-06",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 },
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1124857 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042143-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2b2aa7
title: Occurrence Download

description: A dataset containing 1430 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Geometry POLYGON((-272.14006 30.56458,-269.71524 30.58986,-269.85355 32.3032,-271.97877 32.32419,-272.14006 30.56458))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2015-2025"
 ]
}

 The dataset includes 1430 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042155-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26023/apg7-d5j5-x30f
title: North Pole Sig Wx Imagery. Version 1.0

description: This dataset contains North Pole Sig Wx forecasts by NCEP taken during the HIPPO-4 project. The data is in GIF format. The data covers the time span from 2011-06-08 12:00:00 to 2011-07-13 18:00:00.
DOI: 10.15468/dl.6jqa6s
title: Occurrence Download

description: A dataset containing 1430 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Geometry POLYGON((-272.14006 30.56458,-269.71524 30.58986,-269.85355 32.3032,-271.97877 32.32419,-272.14006 30.56458))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2015-2025"
 ]
}

 The dataset includes 1430 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042154-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pch5gu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plochionus pallens",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042157-250920141307145/datasets/export for details.