cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1293643
title: #Ferguson12.23-12.26.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293644
title: #Ferguson12.26-12.28.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293642
title: #Ferguson12.20-12.23.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293643.v1
title: #Ferguson12.23-12.26.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293645.v1
title: #Ferguson12.28-1.1.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293641
title: #Ferguson12.18-12.20.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293644.v1
title: #Ferguson12.26-12.28.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293639
title: #Ferguson12.12-12.15.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293640
title: #Ferguson12.15-12.18.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293642.v1
title: #Ferguson12.20-12.23.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293637
title: manual_goldstandard_516conditions_only.csv

description: We present a method for classifying severity at the phenotype-level that uses the Systemized Nomenclature of Medicine – Clinical Terms. Our method is called the Classification Approach for Extracting Severity Automatically from Electronic Health Records (CAESAR). CAESAR combines multiple severity measures – number of comorbidities, medications, procedures, cost and treatment time, and a proportional index term. Using a random forest algorithm and these severity measures as input, CAESAR differentiates between severe and mild phenotypes (sensitivity = 91.67, specificity = 77.78) when compared to a manually evaluated gold standard (k=0.716). CAESAR enables researchers to measure phenotype severity from EHRs to identify phenotypes that are important for comparative effectiveness research.
DOI: 10.6084/m9.figshare.1293638
title: #Ferguson12.10-12.12.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293639.v1
title: #Ferguson12.12-12.15.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293636
title: #Ferguson12.7-12.10.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293637.v1
title: manual_goldstandard_516conditions_only.csv

description: We present a method for classifying severity at the phenotype-level that uses the Systemized Nomenclature of Medicine – Clinical Terms. Our method is called the Classification Approach for Extracting Severity Automatically from Electronic Health Records (CAESAR). CAESAR combines multiple severity measures – number of comorbidities, medications, procedures, cost and treatment time, and a proportional index term. Using a random forest algorithm and these severity measures as input, CAESAR differentiates between severe and mild phenotypes (sensitivity = 91.67, specificity = 77.78) when compared to a manually evaluated gold standard (k=0.716). CAESAR enables researchers to measure phenotype severity from EHRs to identify phenotypes that are important for comparative effectiveness research.
DOI: 10.6084/m9.figshare.1293638.v1
title: #Ferguson12.10-12.12.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293632
title: #Ferguson12.2-12.4.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293634
title: #Ferguson12.5-12.7.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293635
title: conditions_for_manual_evaluators.xlsx

description: We present a method for classifying severity at the phenotype-level that uses the Systemized Nomenclature of Medicine – Clinical Terms. Our method is called the Classification Approach for Extracting Severity Automatically from Electronic Health Records (CAESAR). CAESAR combines multiple severity measures – number of comorbidities, medications, procedures, cost and treatment time, and a proportional index term. Using a random forest algorithm and these severity measures as input, CAESAR differentiates between severe and mild phenotypes (sensitivity = 91.67, specificity = 77.78) when compared to a manually evaluated gold standard (k=0.716). CAESAR enables researchers to measure phenotype severity from EHRs to identify phenotypes that are important for comparative effectiveness research.
DOI: 10.6084/m9.figshare.1293640.v1
title: #Ferguson12.15-12.18.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293636.v1
title: #Ferguson12.7-12.10.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293631
title: #Ferguson11.30-12.2.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293631.v1
title: #Ferguson11.30-12.2.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293632.v1
title: #Ferguson12.2-12.4.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293634.v1
title: #Ferguson12.5-12.7.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293635.v1
title: conditions_for_manual_evaluators.xlsx

description: We present a method for classifying severity at the phenotype-level that uses the Systemized Nomenclature of Medicine – Clinical Terms. Our method is called the Classification Approach for Extracting Severity Automatically from Electronic Health Records (CAESAR). CAESAR combines multiple severity measures – number of comorbidities, medications, procedures, cost and treatment time, and a proportional index term. Using a random forest algorithm and these severity measures as input, CAESAR differentiates between severe and mild phenotypes (sensitivity = 91.67, specificity = 77.78) when compared to a manually evaluated gold standard (k=0.716). CAESAR enables researchers to measure phenotype severity from EHRs to identify phenotypes that are important for comparative effectiveness research.
DOI: 10.6084/m9.figshare.1293629
title: #Ferguson11.25-11.27.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293630
title: #Ferguson11.27-11.30.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293627
title: #Ferguson11.27-11.30.xlsx

description: Tweets on #Ferguson from November 27th 2014 to November 30th 2014. Data was collected on TweetArchivist.
DOI: 10.6084/m9.figshare.1293630.v1
title: #Ferguson11.27-11.30.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293627.v1
title: #Ferguson11.27-11.30.xlsx

description: Tweets on #Ferguson from November 27th 2014 to November 30th 2014. Data was collected on TweetArchivist.
DOI: 10.6084/m9.figshare.1293629.v1
title: #Ferguson11.25-11.27.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.1293562
title: WEO2. 3D Models relating to Quantum mechanical simulations.

description: 3D Models relating to Quantum mechanical simulations.
DOI: 10.6084/m9.figshare.1293555
title: DATASET

description: Dataset for 'Quantitative assessment of visual cortex function with fMRI at 7 Tesla – test-retest variability'
DOI: 10.6084/m9.figshare.1293556
title: new fileset

description: Datset
DOI: 10.6084/m9.figshare.1293562.v1
title: WEO2. 3D Models relating to Quantum mechanical simulations.

description: 3D Models relating to Quantum mechanical simulations.
DOI: 10.23645/epacomptox.6062530.v4
title: ToxCast & Tox21 high-throughput assay information

description: ToxCast high-throughput assay information including assay annotation user guide; assay target information; study design information and quality statistics on the assays.
DOI: 10.6084/m9.figshare.1293507
title: An efficient <i>in vitro</i> propagation, antioxidant and antimicrobial activities of <i>Aphyllorchis montana</i> Rchb.f.

description: An <i>in vitro</i> plant regeneration protocol was successfully established in <i>Aphyllorchis montana</i>, a saprophytic achlorophyllous orchid by culturing immature seeds. Among the six basal media evaluated for seed germination, BM-1-Terrestrial Orchid medium was found to be the best followed by Knudson C medium. Half-strength BM-1-Terrestrial Orchid medium was supplemented with different growth regulators either individually or in combinations for multiplication of shoots induction. Of the five cytokinins tested, thidiazuron at 6.8 μM was found to be most effective for multiple shoot induction yielding 17.24 ± 0.27 shoots after 10 weeks of culture. Addition of low concentration of α-Naphthaleneacetic acid (1.3 μM) in MS medium supplemented with the cytokinin thidiazuron (6.8 μM) favored shoot multiplication. The addition of organic additives to the medium containing thidiazuron enhanced the number of regenerated shoots. The plantlets were acclimatized, and the survival rate was 100%. Screening of the antioxidant and antimicrobial activities and estimation of total phenolics and flavonoid content of methanolic extracts of micropropagated plants were also carried out and compared with that of the wild-grown plants. In all the tests, methanolic extract from wild-grown plants showed higher antioxidant, antimicrobial activity, total phenolics and flavonoid content than <i>in vitro</i> propagated plants.
DOI: 10.6084/m9.figshare.1293556.v1
title: new fileset

description: Datset
DOI: 10.6084/m9.figshare.1293507.v2
title: An efficient <i>in vitro</i> propagation, antioxidant and antimicrobial activities of <i>Aphyllorchis montana</i> Rchb.f.

description: An <i>in vitro</i> plant regeneration protocol was successfully established in <i>Aphyllorchis montana</i>, a saprophytic achlorophyllous orchid by culturing immature seeds. Among the six basal media evaluated for seed germination, BM-1-Terrestrial Orchid medium was found to be the best followed by Knudson C medium. Half-strength BM-1-Terrestrial Orchid medium was supplemented with different growth regulators either individually or in combinations for multiplication of shoots induction. Of the five cytokinins tested, thidiazuron at 6.8 μM was found to be most effective for multiple shoot induction yielding 17.24 ± 0.27 shoots after 10 weeks of culture. Addition of low concentration of α-Naphthaleneacetic acid (1.3 μM) in MS medium supplemented with the cytokinin thidiazuron (6.8 μM) favored shoot multiplication. The addition of organic additives to the medium containing thidiazuron enhanced the number of regenerated shoots. The plantlets were acclimatized, and the survival rate was 100%. Screening of the antioxidant and antimicrobial activities and estimation of total phenolics and flavonoid content of methanolic extracts of micropropagated plants were also carried out and compared with that of the wild-grown plants. In all the tests, methanolic extract from wild-grown plants showed higher antioxidant, antimicrobial activity, total phenolics and flavonoid content than <i>in vitro</i> propagated plants.
DOI: 10.6084/m9.figshare.1293555.v2
title: DATASET

description: Dataset for 'Quantitative assessment of visual cortex function with fMRI at 7 Tesla – test-retest variability'
DOI: 10.6084/m9.figshare.1293555.v1
title: DATASET

description: Dataset for 'Quantitative assessment of visual cortex function with fMRI at 7 Tesla – test-retest variability'
DOI: 10.6084/m9.figshare.1293507.v1
title: An efficient <i>in-vitro</i> propagation, antioxidant and antimicrobial activities of <i>Aphyllorchis montana</i> (Reichenb.f.)

description: An <i>in-vitro</i> plant regeneration protocol was successfully established in <i>Aphyllorchis montana</i>, a saprophytic achlorophyllous orchid by culturing immature seeds. Among the six basal media evaluated for seed germination, BM-1-Terrestrial Orchid medium was found to be the best followed by Knudson C medium. Half strength BM-1-Terrestrial Orchid medium was supplemented with different growth regulators either individually or in combinations for multiplication of shoots induction. Of the five cytokinins tested, thidiazuron at 6.8 μM was found to be most effective for multiple shoot induction yielding 17.24 ± 0.27 shoots after 10 weeks of culture. Addition of low concentration of α-Naphthaleneacetic acid (1.3μM) in MS medium supplemented with the cytokinin thidiazuron (6.8 μM) favoured shoot multiplication. The addition of organic additives to the medium containing thidiazuron enhanced the number of regenerated shoots. The plantlets were acclimatized and the survival rate was 100 %. Screening of the antioxidant and antimicrobial activities and estimation of total phenolics and flavonoid content of methanolic extracts of micropropagated plants were also carried out and compared with that of the wild-grown plants. In all the tests, methanolic extract from wild-grown plants showed higher antioxidant, antimicrobial activity, total phenolics and flavonoid content than <i>in-vitro</i> propagated plants.
DOI: 10.6084/m9.figshare.1293479
title: Aβ induces oxidative stress in senescence-accelerated (SAMP8) mice

description: According to the amyloid hypothesis, amyloid β accumulates in brains with Alzheimer’s disease (AD) and triggers cell death and memory deficit. Previously, we developed a rice Aβ vaccine expressing Aβ, which reduced brain Aβ levels in the Tg2576 mouse model of familial AD. We used senescence-accelerated SAMP8 mice as a model of sporadic AD and investigated the relationship between Aβ and oxidative stress. Insoluble Aβ and 4-hydroxynonenal (4-HNE) levels tended to be reduced in SAMP8 mice-fed the rice Aβ vaccine. We attempted to clarify the relationship between oxidative stress and Aβ <i>in vitro</i>. Addition of Aβ peptide to the culture medium resulted in an increase in 4-HNE levels in SH-SY5Y cells. Tg2576 mice, which express large amounts of Aβ in their brain, also exhibited increased 4-HNE levels; this increase was inhibited by the Aβ vaccine. These results indicate that Aβ induces oxidative stress in cultured cells and in the mouse brain.
DOI: 10.6084/m9.figshare.1293479.v1
title: Aβ induces oxidative stress in senescence-accelerated (SAMP8) mice

description: According to the amyloid hypothesis, amyloid β accumulates in brains with Alzheimer’s disease (AD) and triggers cell death and memory deficit. Previously, we developed a rice Aβ vaccine expressing Aβ, which reduced brain Aβ levels in the Tg2576 mouse model of familial AD. We used senescence-accelerated SAMP8 mice as a model of sporadic AD and investigated the relationship between Aβ and oxidative stress. Insoluble Aβ and 4-hydroxynonenal (4-HNE) levels tended to be reduced in SAMP8 mice-fed the rice Aβ vaccine. We attempted to clarify the relationship between oxidative stress and Aβ <i>in vitro</i>. Addition of Aβ peptide to the culture medium resulted in an increase in 4-HNE levels in SH-SY5Y cells. Tg2576 mice, which express large amounts of Aβ in their brain, also exhibited increased 4-HNE levels; this increase was inhibited by the Aβ vaccine. These results indicate that Aβ induces oxidative stress in cultured cells and in the mouse brain.
DOI: 10.6084/m9.figshare.1293479.v3
title: Aβ induces oxidative stress in senescence-accelerated (SAMP8) mice

description: According to the amyloid hypothesis, amyloid β accumulates in brains with Alzheimer’s disease (AD) and triggers cell death and memory deficit. Previously, we developed a rice Aβ vaccine expressing Aβ, which reduced brain Aβ levels in the Tg2576 mouse model of familial AD. We used senescence-accelerated SAMP8 mice as a model of sporadic AD and investigated the relationship between Aβ and oxidative stress. Insoluble Aβ and 4-hydroxynonenal (4-HNE) levels tended to be reduced in SAMP8 mice-fed the rice Aβ vaccine. We attempted to clarify the relationship between oxidative stress and Aβ <i>in vitro</i>. Addition of Aβ peptide to the culture medium resulted in an increase in 4-HNE levels in SH-SY5Y cells. Tg2576 mice, which express large amounts of Aβ in their brain, also exhibited increased 4-HNE levels; this increase was inhibited by the Aβ vaccine. These results indicate that Aβ induces oxidative stress in cultured cells and in the mouse brain.
DOI: 10.6084/m9.figshare.1293479.v2
title: Aβ induces oxidative stress in senescence-accelerated (SAMP8) mice

description: According to the amyloid hypothesis, amyloid β accumulates in brains with Alzheimer’s disease (AD) and triggers cell death and memory deficit. Previously, we developed a rice Aβ vaccine expressing Aβ, which reduced brain Aβ levels in the Tg2576 mouse model of familial AD. We used senescence-accelerated SAMP8 mice as a model of sporadic AD and investigated the relationship between Aβ and oxidative stress. Insoluble Aβ and 4-hydroxynonenal (4-HNE) levels tended to be reduced in SAMP8 mice-fed the rice Aβ vaccine. We attempted to clarify the relationship between oxidative stress and Aβ <i>in vitro</i>. Addition of Aβ peptide to the culture medium resulted in an increase in 4-HNE levels in SH-SY5Y cells. Tg2576 mice, which express large amounts of Aβ in their brain, also exhibited increased 4-HNE levels; this increase was inhibited by the Aβ vaccine. These results indicate that Aβ induces oxidative stress in cultured cells and in the mouse brain.
DOI: 10.6084/m9.figshare.1293448
title: Cryogenian magmatism and crustal reworking in the Southern Granulite Terrane, India

description: Understanding Neoproterozoic crustal evolution is fundamental to reconstructing the Gondwana supercontinent, which was assembled at this time. Here we report evidence of Cryogenian crustal reworking in the Madurai Block of the Southern Granulite Terrane of India. The study focuses on a garnet-bearing granite–charnockite suite, where the granite shows <i>in situ</i> dehydration into patches and veins of incipient charnockite along the contact with charnockite. The granite also carries dismembered layers of Mg–Al-rich granulite. Micro-textural evidence for dehydration of granite in the presence of CO<sub>2</sub>-rich fluids includes the formation of orthopyroxene by the breakdown of biotite, neoblastic zircon growth in the dehydration zone, at around 870°C and 8 kbar. The zircon U–Pb ages suggest formation of the granite, charnockite, and incipient charnockite at 836 ± 73, 831 ± 31, and 772 ± 49 Ma, respectively. Negative zircon εHf (<i>t</i>) (−5 to −20) values suggest that these rocks were derived from a reworked Palaeoproterozoic crustal source. Zircon grains in the Mg–Al-rich granulite record a spectrum of ages from ca. 2300 to ca. 500 Ma, suggesting multiple provenances ranging from Palaeoproterozoic to mid-Neoproterozoic, with neoblastic zircon growth during high-temperature metamorphism in the Cambrian. We propose that the garnet-bearing granite and charnockite reflect the crustal reworking of aluminous crustal material indicated by the presence of biotite + quartz + aluminosilicate inclusions in the garnet within the granite. This crustal source can be the Mg–Al-rich layers carried by the granite itself, which later experienced high-temperature regional metamorphism at ca. 550 Ma. Our model also envisages that the CO<sub>2</sub> which dehydrated the garnet-bearing granite generating incipient charnockite was sourced from the proximal massive charnockite through advection. These Cryogenian crustal reworking events are related to prolonged tectonic activities prior to the final assembly of the Gondwana supercontinent.
DOI: 10.6084/m9.figshare.1293447
title: Research Tools: Supporting Research and Publication

description: “Research Tools” can be defined as vehicles that broadly facilitate research and related activities. Scientific tools enable researchers to collect, organize, analyze, visualize and publicized research outputs. Dr. Nader has collected over 700 tools that enable students to follow the correct path in research and to ultimately produce high-quality research outputs with more accuracy and efficiency. It is assembled as an interactive Web-based mind map, titled “Research Tools”, which is updated periodically. “Research Tools” consists of a hierarchical set of nodes. It has four main nodes: (1) Searching the literature, (2) Writing a paper, (3) Targeting suitable journals, and (4) Enhancing visibility and impact of the research, and six auxiliary nodes. Several free tools can be found in the child nodes. Some paid tools are also included. In this workshop some tools as examples from the four main nodes will be described. The e-skills learned from the workshop are useful across various research disciplines and research institutions.
DOI: 10.6084/m9.figshare.1293448.v2
title: Cryogenian magmatism and crustal reworking in the Southern Granulite Terrane, India

description: Understanding Neoproterozoic crustal evolution is fundamental to reconstructing the Gondwana supercontinent, which was assembled at this time. Here we report evidence of Cryogenian crustal reworking in the Madurai Block of the Southern Granulite Terrane of India. The study focuses on a garnet-bearing granite–charnockite suite, where the granite shows <i>in situ</i> dehydration into patches and veins of incipient charnockite along the contact with charnockite. The granite also carries dismembered layers of Mg–Al-rich granulite. Micro-textural evidence for dehydration of granite in the presence of CO<sub>2</sub>-rich fluids includes the formation of orthopyroxene by the breakdown of biotite, neoblastic zircon growth in the dehydration zone, at around 870°C and 8 kbar. The zircon U–Pb ages suggest formation of the granite, charnockite, and incipient charnockite at 836 ± 73, 831 ± 31, and 772 ± 49 Ma, respectively. Negative zircon εHf (<i>t</i>) (−5 to −20) values suggest that these rocks were derived from a reworked Palaeoproterozoic crustal source. Zircon grains in the Mg–Al-rich granulite record a spectrum of ages from ca. 2300 to ca. 500 Ma, suggesting multiple provenances ranging from Palaeoproterozoic to mid-Neoproterozoic, with neoblastic zircon growth during high-temperature metamorphism in the Cambrian. We propose that the garnet-bearing granite and charnockite reflect the crustal reworking of aluminous crustal material indicated by the presence of biotite + quartz + aluminosilicate inclusions in the garnet within the granite. This crustal source can be the Mg–Al-rich layers carried by the granite itself, which later experienced high-temperature regional metamorphism at ca. 550 Ma. Our model also envisages that the CO<sub>2</sub> which dehydrated the garnet-bearing granite generating incipient charnockite was sourced from the proximal massive charnockite through advection. These Cryogenian crustal reworking events are related to prolonged tectonic activities prior to the final assembly of the Gondwana supercontinent.
DOI: 10.6084/m9.figshare.1293446
title: Bangor University APCs 2014

description: This spreadsheet contains details of article processing charges (APCs) paid by Bangor University during 2014. The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/) and has been released with permission of the Bangor University Library.
DOI: 10.6084/m9.figshare.1293439
title: Gaussian Job Archive for C13H14BeFN3O3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.