cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11474445
title: Comparative rock magnetic study of Eocene volcanogenic and sedimentary rocks from Yunnan, southeastern Tibetan Plateau, and its geological implications

description: Many recent bio-magnetostratigraphic studies within and around the Tibetan Plateau have resulted in significant age differences, due to lack of radiometric age constraints. It has hindered the knowledge on the tectonic and paleoclimate evolutions of the Tibetan Plateau. Identifying barely visible tephra-bearing layers is urgent to solve the debate. Here we carry out a comparative rock magnetic study of Eocene volcanogenic and sedimentary rocks from the Jianchuan and Qujing basins of the Yunnan Plateau. Our aim is to establish an effective method for tephra identification in sedimentary sequences. Petrographic and rare earth element (REE) analyzes demonstrate that the volcanogenic rocks are of basic-intermediate magmatic origin with no sign of deformation or alteration, and the sedimentary rocks are unaffected by volcanic disturbance. Rock magnetic analyzes reveal that the primary ferrimagnetic minerals of the volcanogenic rocks are Ti-poor titanomagnetite and/or magnetite, including pseudo-single-domain, viscous superparamagnetic (VSP) and ultrafine superparamagnetic (true SP, non-viscous around room temperature) grains. Hematite is the dominant magnetic mineral in the sedimentary rocks, and paramagnetic minerals are also abundant; pseudo-single-domain/single-domain magnetite and maghemite are also present. The enrichment of ultrafine SP grains in the volcanogenic rocks may induce strikingly peaked signals in low-temperature frequency-dependent susceptibility measurement, in sharp contrast with pedogenically produced VSP particles that show no peaks. Therefore, we attribute the low-temperature frequency-dependent susceptibility parameters to the effective and sensitive magnetic parameters for identifying tephra-bearing layers within the sedimentary sequences of the Yunnan Plateau.
DOI: 10.6084/m9.figshare.11474403
title: IJC_Clinical features and SNPs genotype.xlsx

description: Genotyping results for 143 risk SNPs with <i>P </i>&lt; 10<sup>-4</sup> from 1365 breast cancer participants.
DOI: 10.6084/m9.figshare.11474445.v2
title: Comparative rock magnetic study of Eocene volcanogenic and sedimentary rocks from Yunnan, southeastern Tibetan Plateau, and its geological implications

description: Many recent bio-magnetostratigraphic studies within and around the Tibetan Plateau have resulted in significant age differences, due to lack of radiometric age constraints. It has hindered the knowledge on the tectonic and paleoclimate evolutions of the Tibetan Plateau. Identifying barely visible tephra-bearing layers is urgent to solve the debate. Here we carry out a comparative rock magnetic study of Eocene volcanogenic and sedimentary rocks from the Jianchuan and Qujing basins of the Yunnan Plateau. Our aim is to establish an effective method for tephra identification in sedimentary sequences. Petrographic and rare earth element (REE) analyzes demonstrate that the volcanogenic rocks are of basic-intermediate magmatic origin with no sign of deformation or alteration, and the sedimentary rocks are unaffected by volcanic disturbance. Rock magnetic analyzes reveal that the primary ferrimagnetic minerals of the volcanogenic rocks are Ti-poor titanomagnetite and/or magnetite, including pseudo-single-domain, viscous superparamagnetic (VSP) and ultrafine superparamagnetic (true SP, non-viscous around room temperature) grains. Hematite is the dominant magnetic mineral in the sedimentary rocks, and paramagnetic minerals are also abundant; pseudo-single-domain/single-domain magnetite and maghemite are also present. The enrichment of ultrafine SP grains in the volcanogenic rocks may induce strikingly peaked signals in low-temperature frequency-dependent susceptibility measurement, in sharp contrast with pedogenically produced VSP particles that show no peaks. Therefore, we attribute the low-temperature frequency-dependent susceptibility parameters to the effective and sensitive magnetic parameters for identifying tephra-bearing layers within the sedimentary sequences of the Yunnan Plateau.
DOI: 10.6084/m9.figshare.11474445.v1
title: Comparative rock magnetic study of Eocene volcanogenic and sedimentary rocks from Yunnan, southeastern Tibetan Plateau, and its geological implications

description: Many recent bio-magnetostratigraphic studies within and around the Tibetan Plateau have resulted in significant age differences, due to lack of radiometric age constraints. It has hindered the knowledge on the tectonic and paleoclimate evolutions of the Tibetan Plateau. Identifying barely visible tephra-bearing layers is urgent to solve the debate. Here we carry out a comparative rock magnetic study of Eocene volcanogenic and sedimentary rocks from the Jianchuan and Qujing basins of the Yunnan Plateau. Our aim is to establish an effective method for tephra identification in sedimentary sequences. Petrographic and rare earth element (REE) analyzes demonstrate that the volcanogenic rocks are of basic-intermediate magmatic origin with no sign of deformation or alteration, and the sedimentary rocks are unaffected by volcanic disturbance. Rock magnetic analyzes reveal that the primary ferrimagnetic minerals of the volcanogenic rocks are Ti-poor titanomagnetite and/or magnetite, including pseudo-single-domain, viscous superparamagnetic (VSP) and ultrafine superparamagnetic (true SP, non-viscous around room temperature) grains. Hematite is the dominant magnetic mineral in the sedimentary rocks, and paramagnetic minerals are also abundant; pseudo-single-domain/single-domain magnetite and maghemite are also present. The enrichment of ultrafine SP grains in the volcanogenic rocks may induce strikingly peaked signals in low-temperature frequency-dependent susceptibility measurement, in sharp contrast with pedogenically produced VSP particles that show no peaks. Therefore, we attribute the low-temperature frequency-dependent susceptibility parameters to the effective and sensitive magnetic parameters for identifying tephra-bearing layers within the sedimentary sequences of the Yunnan Plateau.
DOI: 10.6084/m9.figshare.11474088
title: Relationship of Icelandic cattle with Northern and Western European cattle breeds, admixture and population structure

description: Icelandic cattle is believed to have been brought from Norway during the settlement of Iceland around AD 870-930. Previous research on genetic relationships has indicated that Icelandic cattle is most related to northern Nordic indigenous breeds. Using single nucleotide polymorphism genotype data from Icelandic cattle and 29 Northern and Western European cattle breeds, we studied relationships and admixture among these breeds, and assessed population structure in Icelandic cattle. Population structure analysis through principal component analysis, estimation of ancestry, and analysis of patterns of population splitting and mixing revealed that Icelandic cattle are most related to three Finncattle breeds (Eastern, Northern and Western Finncattle), and Swedish Mountain cattle. Icelandic cattle has very low levels of admixture. We observed very limited population structure in Icelandic cattle. The observed structure was due to variable sire contributions. Over 1000 years of almost complete isolation has made Icelandic cattle highly genetically distinct from other cattle breeds.
DOI: 10.6084/m9.figshare.11474088.v1
title: Relationship of Icelandic cattle with Northern and Western European cattle breeds, admixture and population structure

description: Icelandic cattle is believed to have been brought from Norway during the settlement of Iceland around AD 870-930. Previous research on genetic relationships has indicated that Icelandic cattle is most related to northern Nordic indigenous breeds. Using single nucleotide polymorphism genotype data from Icelandic cattle and 29 Northern and Western European cattle breeds, we studied relationships and admixture among these breeds, and assessed population structure in Icelandic cattle. Population structure analysis through principal component analysis, estimation of ancestry, and analysis of patterns of population splitting and mixing revealed that Icelandic cattle are most related to three Finncattle breeds (Eastern, Northern and Western Finncattle), and Swedish Mountain cattle. Icelandic cattle has very low levels of admixture. We observed very limited population structure in Icelandic cattle. The observed structure was due to variable sire contributions. Over 1000 years of almost complete isolation has made Icelandic cattle highly genetically distinct from other cattle breeds.
DOI: 10.6084/m9.figshare.11474028
title: Video-triggered professional learning for general practice trainers: using the ‘cauldron of practice’ to explore teaching and learning

description: Many clinicians who take on a formal role of supervising or teaching trainees need to be taught how to teach and then continuously improve as educators. We describe the research-informed design of a novel professional development intervention that may be perceived by clinical educators as challenging, but being based on the key features of effective professional development is likely to lead to changes in their teaching practices. The video-club brings together a small group of clinical educators who have a shared interest in exploring their educator role and their teaching practices. It supports their learning through collective inquiry, using video-recordings of their authentic teaching practices as stimuli for discussion. A pilot has produced findings that are promising in terms of outcomes and impact. Participants responded to the educational design in the way that was envisioned and engaged with the requisite risk-taking and vulnerability that was necessary for their own learning and promoting learning for others.
DOI: 10.6084/m9.figshare.11474028.v1
title: Video-triggered professional learning for general practice trainers: using the ‘cauldron of practice’ to explore teaching and learning

description: Many clinicians who take on a formal role of supervising or teaching trainees need to be taught how to teach and then continuously improve as educators. We describe the research-informed design of a novel professional development intervention that may be perceived by clinical educators as challenging, but being based on the key features of effective professional development is likely to lead to changes in their teaching practices. The video-club brings together a small group of clinical educators who have a shared interest in exploring their educator role and their teaching practices. It supports their learning through collective inquiry, using video-recordings of their authentic teaching practices as stimuli for discussion. A pilot has produced findings that are promising in terms of outcomes and impact. Participants responded to the educational design in the way that was envisioned and engaged with the requisite risk-taking and vulnerability that was necessary for their own learning and promoting learning for others.
DOI: 10.6084/m9.figshare.11474016
title: The Draft Genome Datasets of the Asian Cricket, Teleogryllus occipitalis, for the Basis of Molecular Research toward Entomophagy

description: Structural and functional annotation of Asian field cricket <i>T. occipitalis</i> gene model
DOI: 10.6084/m9.figshare.11474016.v1
title: The Draft Genome Datasets of the Asian Cricket, Teleogryllus occipitalis, for the Basis of Molecular Research toward Entomophagy

description: Structural and functional annotation of Asian field cricket <i>T. occipitalis</i> gene model
DOI: 10.6084/m9.figshare.11474016.v2
title: The Draft Genome Datasets of the Asian Cricket, Teleogryllus occipitalis, for the Basis of Molecular Research toward Entomophagy

description: Structural and functional annotation of Asian field cricket <i>T. occipitalis</i> gene model
DOI: 10.6084/m9.figshare.11474016.v3
title: The Draft Genome Datasets of the Asian Cricket, Teleogryllus occipitalis, for the Basis of Molecular Research toward Entomophagy

description: Structural and functional annotation of Asian field cricket <i>T. occipitalis</i> gene model
DOI: 10.6084/m9.figshare.11474004
title: MOESM1 of The interactome and proteomic responses of ALKBH7 in cell lines by in-depth proteomics analysis

description: Additional file 1: Table S1. Target sequences of ALKBH7. Table S2. Primer sequences of ALKBH7 and GAPDH used in qPCR. Table S3. Identified proteins in IP assay for bioinformatic analysis. Table S4. Enriched Gene ontology and pathway categories in IP assay. Table S5. Sequences of 71 peptides performed in vitro demethylation assays. Table S6. Identified proteins and corresponding bioinformatic analysis in TMT-based MS/MS. Table S7. Enriched Gene ontology and pathway categories in TMT-based MS/MS. Table S8. Detailed information of proteins for protein-protein interaction.
DOI: 10.6084/m9.figshare.11473872
title: MOESM9 of Charting the diversity of uncultured viruses of Archaea and Bacteria

description: Additional file 9: File S1. Link to download the multifasta file containing the 195,698 viral genomic sequences from Vir_DB_Nuc analyzed in this study.
DOI: 10.6084/m9.figshare.11473869
title: MOESM8 of Charting the diversity of uncultured viruses of Archaea and Bacteria

description: Additional file 8: Table S4. Characteristics of the nodes of the tree depicted in Fig. 1, including depth, height, and robustness measured with varying values of percentage of proteins removed during sub-sampling with 50 replicates for each value.
DOI: 10.6084/m9.figshare.11473866
title: MOESM7 of Charting the diversity of uncultured viruses of Archaea and Bacteria

description: Additional file 7: Table S3. Table describing the prevalence of OGs across GL-UVAB Level-1 lineages with associated Taxonomic and functional annotation. Only OGs detected in at least 3 members of a lineage are shown.
DOI: 10.6084/m9.figshare.11473869.v1
title: MOESM8 of Charting the diversity of uncultured viruses of Archaea and Bacteria

description: Additional file 8: Table S4. Characteristics of the nodes of the tree depicted in Fig. 1, including depth, height, and robustness measured with varying values of percentage of proteins removed during sub-sampling with 50 replicates for each value.
DOI: 10.6084/m9.figshare.11473872.v1
title: MOESM9 of Charting the diversity of uncultured viruses of Archaea and Bacteria

description: Additional file 9: File S1. Link to download the multifasta file containing the 195,698 viral genomic sequences from Vir_DB_Nuc analyzed in this study.
DOI: 10.6084/m9.figshare.11473866.v1
title: MOESM7 of Charting the diversity of uncultured viruses of Archaea and Bacteria

description: Additional file 7: Table S3. Table describing the prevalence of OGs across GL-UVAB Level-1 lineages with associated Taxonomic and functional annotation. Only OGs detected in at least 3 members of a lineage are shown.
DOI: 10.6084/m9.figshare.11473851
title: MOESM4 of Charting the diversity of uncultured viruses of Archaea and Bacteria

description: Additional file 4: Table S2. Prevalence of targeted hosts, ecosystem and dataset sources, Taxonomic classification and completeness of genomic sequences among the three levels of GL-UVAB lineages.
DOI: 10.6084/m9.figshare.11473851.v1
title: MOESM4 of Charting the diversity of uncultured viruses of Archaea and Bacteria

description: Additional file 4: Table S2. Prevalence of targeted hosts, ecosystem and dataset sources, Taxonomic classification and completeness of genomic sequences among the three levels of GL-UVAB lineages.
DOI: 10.6084/m9.figshare.11473827
title: MOESM1 of Charting the diversity of uncultured viruses of Archaea and Bacteria

description: Additional file 1: Table S1. Table containing detailed information of all the genomic sequences from Vir_DB_Nuc analyzed in this study, including sequence identifier, NCBI access number, original dataset, sequence length, number of identified PEGs, Taxonomic classification (NCBI and ICTV), ecosystem source and host Taxonomic classification and affiliation to the identified GL-UVAB lineages at three hierarchical levels. The pVOGs_Perc_Matched field corresponds to the percentage of proteins derived from a sequence that matched the pVOGs database and the pVOGs_VQ_Score corresponds to the added viral quotient (AVQ) of these matches. The Bona_Fide_Phage_Homology_CR_ID corresponds to the identifier of the closest relative identified for a given sequence among those of Vir_DB_Nuc_R1. Bona_Fide_Phage_Homology_CR_Hits represents the absolute number of protein matches to the closest relative and Bona_Fide_Phage_Homology_CR_Perc_Matched represents the percentage of proteins in a sequence covered by these matches.
DOI: 10.6084/m9.figshare.11473824
title: MOESM11 of Charting the diversity of uncultured viruses of Archaea and Bacteria

description: Additional file 11: File S3. Phylogenomic tree used to define GL-UVAB lineages. The tree was constructed with the Neighbor-Joining algorithm based on Dice distances calculated between 6,646 genomic sequences.
DOI: 10.6084/m9.figshare.11473827.v1
title: MOESM1 of Charting the diversity of uncultured viruses of Archaea and Bacteria

description: Additional file 1: Table S1. Table containing detailed information of all the genomic sequences from Vir_DB_Nuc analyzed in this study, including sequence identifier, NCBI access number, original dataset, sequence length, number of identified PEGs, Taxonomic classification (NCBI and ICTV), ecosystem source and host Taxonomic classification and affiliation to the identified GL-UVAB lineages at three hierarchical levels. The pVOGs_Perc_Matched field corresponds to the percentage of proteins derived from a sequence that matched the pVOGs database and the pVOGs_VQ_Score corresponds to the added viral quotient (AVQ) of these matches. The Bona_Fide_Phage_Homology_CR_ID corresponds to the identifier of the closest relative identified for a given sequence among those of Vir_DB_Nuc_R1. Bona_Fide_Phage_Homology_CR_Hits represents the absolute number of protein matches to the closest relative and Bona_Fide_Phage_Homology_CR_Perc_Matched represents the percentage of proteins in a sequence covered by these matches.
DOI: 10.6084/m9.figshare.11473824.v1
title: MOESM11 of Charting the diversity of uncultured viruses of Archaea and Bacteria

description: Additional file 11: File S3. Phylogenomic tree used to define GL-UVAB lineages. The tree was constructed with the Neighbor-Joining algorithm based on Dice distances calculated between 6,646 genomic sequences.
DOI: 10.6084/m9.figshare.11473818
title: MOESM10 of Charting the diversity of uncultured viruses of Archaea and Bacteria

description: Additional file 10: File S2. Link to download the multifasta file containing the 4,332,223 protein encoding gene sequences predicted from Vir_DB_Nuc.
DOI: 10.6084/m9.figshare.11473818.v1
title: MOESM10 of Charting the diversity of uncultured viruses of Archaea and Bacteria

description: Additional file 10: File S2. Link to download the multifasta file containing the 4,332,223 protein encoding gene sequences predicted from Vir_DB_Nuc.
DOI: 10.6084/m9.figshare.11473788
title: Teleogryllus_occipitalis_geneset.gtf

description: GTF file of 20,768 candidate protein-coding gene of <i>T. occipitalis</i>
DOI: 10.6084/m9.figshare.11473782
title: Teleogryllus_occipitalis_geneset.fasta

description: 20,768 candidate protein sequences of <i>T. occipitalis</i>
DOI: 10.6084/m9.figshare.11473788.v2
title: Teleogryllus_occipitalis_geneset.gtf

description: GTF file of 20,768 candidate protein-coding gene of <i>T. occipitalis</i>
DOI: 10.6084/m9.figshare.11473788.v1
title: Teleogryllus_occipitalis_geneset.gtf

description: GTF file of 20,768 candidate protein-coding gene of <i>T. occipitalis</i>
DOI: 10.6084/m9.figshare.11473782.v1
title: Multi-fasta file of T. occipitalis protein sequences

description: 20,768 candidate protein sequences of <i>T. occipitalis</i>
DOI: 10.6084/m9.figshare.11473782.v3
title: Teleogryllus_occipitalis_geneset.fasta

description: 20,768 candidate protein sequences of <i>T. occipitalis</i>
DOI: 10.6084/m9.figshare.11473779.v1
title: Synthesising Statistical Evaluations of Pinch Force and Endurance among Young and Elderly People using TRIZ Techniques

description: This data is from an experiment which measures the finger pinch endurance time and force of elderly and young people.<br>
DOI: 10.6084/m9.figshare.11473782.v2
title: Teleogryllus_occipitalis_geneset.fasta

description: 20,768 candidate protein sequences of <i>T. occipitalis</i>
DOI: 10.6084/m9.figshare.11473776
title: Teleogryllus_occipitalis_functional_annotation.txt

description: 20,768 candidate protein-coding gene model in <i>T. occipitalis</i> were functionally annotated using BLASTp v2.7.1+ against proteome data of reviewed Swiss-Prot, and , a protein datasets from Homo sapiens and Drosophila melanogaster in Uniprot database.
DOI: 10.6084/m9.figshare.11473776.v2
title: Teleogryllus_occipitalis_functional_annotation.txt

description: 20,768 candidate protein-coding gene model in <i>T. occipitalis</i> were functionally annotated using BLASTp v2.7.1+ against proteome data of reviewed Swiss-Prot, and , a protein datasets from Homo sapiens and Drosophila melanogaster in Uniprot database.
DOI: 10.6084/m9.figshare.11473779.v2
title: Synthesising Statistical Evaluations of Pinch Force and Endurance among Young and Elderly People using TRIZ Techniques

description: This data is from an experiment which measures the finger pinch endurance time and force of elderly and young people.<br>
DOI: 10.6084/m9.figshare.11473776.v1
title: Teleogryllus_occipitalis_functional_annotation.txt

description: 20,768 candidate protein-coding gene model in <i>T. occipitalis</i> were functionally annotated using BLASTp v2.7.1+ against proteome data of reviewed Swiss-Prot, and , a protein datasets from Homo sapiens and Drosophila melanogaster in Uniprot database.
DOI: 10.6084/m9.figshare.11473509
title: Mobile devices and apps_raw data for NBU.xls

description: Teachers' perceptions on the use of mobile devices and applications.<br>
DOI: 10.6084/m9.figshare.11473509.v1
title: Mobile devices and apps_raw data for NBU.xls

description: Teachers' perceptions on the use of mobile devices and applications.<br>
DOI: 10.6084/m9.figshare.11473404
title: Supplementary Tables S1-S6

description: Supplementary Tables S1-S6 include detailed analysis of the RNA-seq data in the associated study of RNA editing in <i>T. brucei</i> procyclic form. The methods section in this study defines each type of analytical value and its determination. Values examined in the tables include: percentage of correctly and incorrectly edited sequences, average parting value, Inc/Cor ratio, and Inc/Cor fold change.
DOI: 10.6084/m9.figshare.11473404.v1
title: Supplementary Tables S1-S6

description: Supplementary Tables S1-S6 include detailed analysis of the RNA-seq data in the associated study of RNA editing in <i>T. brucei</i> procyclic form. The methods section in this study defines each type of analytical value and its determination. Values examined in the tables include: percentage of correctly and incorrectly edited sequences, average parting value, Inc/Cor ratio, and Inc/Cor fold change.