cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1086068
title: Data management form: Intravenous magnesium sulfate for treating adults with acute asthma in the emergency department

description: Excel file contains all extracted data, including characteristics and numerical outcome data, that were used in the development of the Cochrane review: Kew KM, Kirtchuk L, Michell CI. Intravenous magnesium sulfate for treating adults with acute asthma in the emergency department. Cochrane Database of Systematic Reviews 2014, Issue 5. Art. No.: CD010909. DOI: 10.1002/14651858.CD010909.pub2. Instructions for how to use and understand the file are given in the first worksheet 'Using this document'.
DOI: 10.6084/m9.figshare.1086068.v1
title: Data management form: Intravenous magnesium sulfate for treating adults with acute asthma in the emergency department

description: Excel file contains all extracted data, including characteristics and numerical outcome data, that were used in the development of the Cochrane review: Kew KM, Kirtchuk L, Michell CI. Intravenous magnesium sulfate for treating adults with acute asthma in the emergency department. Cochrane Database of Systematic Reviews 2014, Issue 5. Art. No.: CD010909. DOI: 10.1002/14651858.CD010909.pub2. Instructions for how to use and understand the file are given in the first worksheet 'Using this document'.
DOI: 10.6084/m9.figshare.1086122.v2
title: Imperial APC data (2006-2014)

description: This data was collected from Imperial College London by Information Power Ltd on behalf of Jisc Collections in March and April 2014, along with the APC expenditure of 23 other UK higher education institutions. It lists APCs paid by Imperial College London during 2006-13 and the first two months of 2014. It is likely that many more articles published by Imperial authors were open access, but the full extent is not currently known. Some figures are missing and the data should not be treated as 100% accurate. It may be supplanted at a later date with more complete data. It has been publicly released with the permission of Imperial College London.
DOI: 10.6084/m9.figshare.1086122.v3
title: Imperial APC data (2006-2014)

description: This data was collected from Imperial College London by Information Power Ltd on behalf of Jisc Collections in March and April 2014, along with the APC expenditure of 23 other UK higher education institutions. It lists APCs paid by Imperial College London during 2006-13 and the first two months of 2014. It is likely that many more articles published by Imperial authors were open access, but the full extent is not currently known. Some figures are missing and the data should not be treated as 100% accurate. It may be supplanted at a later date with more complete data. It has been publicly released with the permission of Imperial College London. <strong>UPDATE</strong> 30 June 2014: File replaced with a version which includes an additional column for PMCID on the main sheet.
DOI: 10.6084/m9.figshare.1085984
title: A Novel Parameterization of Droplet Activation Suitable for Global Climate Models

description: Research update presented at CENSAM 2014 workshop
DOI: 10.6084/m9.figshare.1086122.v4
title: Imperial APC data (2006-2014)

description: This data was collected from Imperial College London by Information Power Ltd on behalf of Jisc Collections in March and April 2014, along with the APC expenditure of 23 other UK higher education institutions. It lists APCs paid by Imperial College London during 2006-13 and the first two months of 2014. It is likely that many more articles published by Imperial authors were open access, but the full extent is not currently known. Some figures are missing and the data should not be treated as 100% accurate. It may be supplanted at a later date with more complete data. It has been publicly released with the permission of Imperial College London. <strong>UPDATE</strong>: File replaced on 30 June 2014 with a version which includes an additional column for PMCID on the main sheet, and again on 1 July 2014 with an additional column for DOI.
DOI: 10.6084/m9.figshare.1086122.v6
title: Imperial APC data (2006-2014)

description: Version 5 This data was collected from Imperial College London by Information Power Ltd on behalf of Jisc Collections in March and April 2014, along with the APC expenditure of 23 other UK higher education institutions. It lists APCs paid by Imperial College London during 2006-13 and the first two months of 2014. It is likely that many more articles published by Imperial authors were open access, but the full extent is not currently known. Some figures are missing and the data should not be treated as 100% accurate. It may be supplanted at a later date with more complete data. It has been publicly released with the permission of Imperial College London. <strong>UPDATES</strong>: File replaced on 30 June 2014 with a version which includes an additional column for PMCID on the main sheet, again on 1 July 2014 with an additional column for DOI, and then twice on 2 July 2014 with some DOIs and PMCIDs corrected.
DOI: 10.6084/m9.figshare.1086122.v5
title: Imperial APC data (2006-2014)

description: This data was collected from Imperial College London by Information Power Ltd on behalf of Jisc Collections in March and April 2014, along with the APC expenditure of 23 other UK higher education institutions. It lists APCs paid by Imperial College London during 2006-13 and the first two months of 2014. It is likely that many more articles published by Imperial authors were open access, but the full extent is not currently known. Some figures are missing and the data should not be treated as 100% accurate. It may be supplanted at a later date with more complete data. It has been publicly released with the permission of Imperial College London. <strong>UPDATES</strong>: File replaced on 30 June 2014 with a version which includes an additional column for PMCID on the main sheet, again on 1 July 2014 with an additional column for DOI, and then on 2 July 2014 with some DOIs and PMCIDs corrected.
DOI: 10.6084/m9.figshare.1084457
title: Tracking the formation of species assemblages over time: phylogenetic reconstruction of patterns of colonisation and speciation

description: Data include 1) code.zip: R code used in the study 2) passeriformes.trees: posterior trees of the New Zealand passerines 3) passeriformes.xml: BEAST input file for the New Zealand passerines.
DOI: 10.6084/m9.figshare.1084457.v2
title: Tracking the formation of species assemblages over time: phylogenetic reconstruction of patterns of colonisation and speciation

description: Data include 1) code.zip: R code used in the study 2) passeriformes.trees: posterior trees of the New Zealand passerines 3) passeriformes.xml: BEAST input file for the New Zealand passerines.
DOI: 10.6084/m9.figshare.1084417
title: Spitzer colours of everything in the universe

description: This is a conference proceeding from the 2010 "From Stars to Galaxies" conference. The poster and its one-page version are spitzer_colours_poster.pdf, spitzer_colours_1page.pdf. The tarfile spitzer_colours.tar.gz contains the individual figures, data files, Python plotting code needed to re-create the figures, and a .bib file. If you use these data please don't forget to cite the original papers; the conference proceeding link is http://adsabs.harvard.edu/abs/2010fsgc.confE.109B
DOI: 10.6084/m9.figshare.1084457.v1
title: Tracking the formation of species assemblages over time: phylogenetic reconstruction of patterns of colonisation and speciation

description: Supplementary materials: 1) R code.R: R code used in the study 2) test: Rimage file to run a test of the R code 3) passeriformes.trees: posterior trees of the New Zealand passerines 4) passeriformes.xml: BEAST input file for the New Zealand passerines.
DOI: 10.6084/m9.figshare.1084395
title: Hologenomic speculation on Nasonia speciation

description: QIIME workflow to produce figures 1 and 2 from Hologenomic speculation on Nasonia speciation by James Angus Chandler and Michael Turelli
DOI: 10.6084/m9.figshare.1084396
title: Data table for PLOS ONE DDT 2014 manuscript

description: Perinatal exposure of mice to the pesticide DDT impairs energy expenditure and metabolism in adult female offspring
DOI: 10.6084/m9.figshare.1084417.v1
title: Spitzer colours of everything in the universe

description: This is a conference proceeding from the 2010 "From Stars to Galaxies" conference. The poster and its one-page version are spitzer_colours_poster.pdf, spitzer_colours_1page.pdf. The tarfile spitzer_colours.tar.gz contains the individual figures, data files, Python plotting code needed to re-create the figures, and a .bib file. If you use these data please don't forget to cite the original papers; the conference proceeding link is http://adsabs.harvard.edu/abs/2010fsgc.confE.109B
DOI: 10.6084/m9.figshare.1084396.v1
title: Data table for PLOS ONE DDT 2014 manuscript

description: Perinatal exposure of mice to the pesticide DDT impairs energy expenditure and metabolism in adult female offspring
DOI: 10.6084/m9.figshare.1084395.v2
title: Hologenomic speculation on Nasonia speciation

description: QIIME workflow to produce figures 1 and 2 from Hologenomic speculation on Nasonia speciation by James Angus Chandler and Michael Turelli
DOI: 10.6084/m9.figshare.1084395.v1
title: Hologenomic Speculation on Nasonia speciation

description: QIIME workflow to produce figures 1 and 2 from Hologenomic speculation on Nasonia speciation by James Angus Chandler and Michael Turelli
DOI: 10.6084/m9.figshare.1084364
title: Keywords: Symptoms

description: 15,135 keyphrases crawled from wrongdiagnosis.com describing health symptoms
DOI: 10.6084/m9.figshare.1084363
title: Keywords: Treatments

description: 4,753 keyphrases crawled from wrongdiagnosis.com describing health treatments and medications
DOI: 10.6084/m9.figshare.1084362
title: Keywords: Diseases

description: 106 disease names crawled from wrongdiagnosis.com
DOI: 10.6084/m9.figshare.1084363.v1
title: Keywords: Treatments

description: 4,753 keyphrases crawled from wrongdiagnosis.com describing health treatments and medications
DOI: 10.6084/m9.figshare.1084358
title: List of Health Keywords

description: 269 health-related keywords that are used in our keyword-filtered Twitter stream.
DOI: 10.6084/m9.figshare.1084343
title: Three bacterial genomes run on R6 Oxford Nanopore MinIon Chemistry

description: Three bacterial genomes pooled at equal DNA concentrations and run on R6 Oxford Nanopore Chemistry. Borellia burdorferi B31, Escherichia coli K12 and Streptomyces avermitilis MA 4680. Note that these have been run together as a pool with no barcoding. The Oxford Nanopore reads are contained in the file ninthtranche_renamed.fastq. The remaining FASTA files are the corresponding reference genomes included for convenience. The Lambda Control DNA spike-in sequence is also included. Bioanalyser traces and materials and methods may be found in the attached file. Version 1.91 Meterichor basecaller using 2D option. S.avermitilis 1.8x coverage<br>B.burgdorferi 18.1x coverage<br>Lambda control spike-in 1,132x coverage<br>E.coli 4,64kb 6702 14.2% 0.25x coverage Statistics for read lengths: Min read length: 5<br>Max read length: 98,366<br>Mean read length: 1998.91<br>Standard deviation of read length: 2942.24<br>Median read length: 1,040<br><br> Statistics for numbers of reads:<br>Number of reads: 47,093 Non-aligned reads 18051 38%<br>Aligned reads 29042 62% Number of reads &gt;=1kb: 24,392 Statistics for bases in the reads: Number of bases in all reads: 94,134,729<br>Number of bases in reads &gt;=1kb: 82,118,285<br>GC Content of reads: 47.21 % Organism Genome size Number of reads aligning Percentage of aligned reads Mean depth of coverage
DOI: 10.6084/m9.figshare.1084343.v1
title: Three bacterial genomes run on R6 Oxford Nanopore MinIon Chemistry

description: Three bacterial genomes pooled at equal DNA concentrations and run on R6 Oxford Nanopore Chemistry. Borellia burdorferi B31, Escherichia coli K12 and Streptomyces avermitilis MA 4680. Note that these have been run together as a pool with no barcoding. The Oxford Nanopore reads are contained in the file ninthtranche_renamed.fastq. The remaining FASTA files are the corresponding reference genomes included for convenience. The Lambda Control DNA spike-in sequence is also included. Bioanalyser traces and materials and methods may be found in the attached file. Version 1.91 Meterichor basecaller using 2D option. S.avermitilis 1.8x coverage<br>B.burgdorferi 18.1x coverage<br>Lambda control spike-in 1,132x coverage<br>E.coli 4,64kb 6702 14.2% 0.25x coverage Statistics for read lengths: Min read length: 5<br>Max read length: 98,366<br>Mean read length: 1998.91<br>Standard deviation of read length: 2942.24<br>Median read length: 1,040<br><br> Statistics for numbers of reads:<br>Number of reads: 47,093 Non-aligned reads 18051 38%<br>Aligned reads 29042 62% Number of reads &gt;=1kb: 24,392 Statistics for bases in the reads: Number of bases in all reads: 94,134,729<br>Number of bases in reads &gt;=1kb: 82,118,285<br>GC Content of reads: 47.21 % Organism Genome size Number of reads aligning Percentage of aligned reads Mean depth of coverage
DOI: 10.6084/m9.figshare.1084326
title: Urban warming trumps natural enemy regulation of herbivorous pests

description: Trees provide ecosystem services that counter negative effects of urban habitats on human and environmental health. Unfortunately, herbivorous arthropod pests are often more abundant on urban than rural trees, reducing tree growth, survival, and ecosystem services. Previous research where vegetation complexity was reduced has attributed elevated urban pest abundance to decreased regulation by natural enemies. However, reducing vegetation complexity, particularly the density of over story trees, also makes cities hotter than natural habitats. We ask how urban habitat characteristics influence an abiotic factor, temperature, and a biotic factor, natural enemy abundance, in regulating the abundance of an urban forest pest, the gloomy scale, (Melanaspis tenebricosa). We used a map of surface temperature to select red maple trees (Acer rubrum) at warmer and cooler sites in Raleigh, NC. We quantified habitat complexity by measuring impervious surface cover, local vegetation structural complexity, and landscape scale vegetation cover around each tree. Using path analysis, we determined that impervious surface (the most important habitat variable) increased scale insect abundance by increasing tree temperature, rather than by reducing natural enemy abundance or percent parasitism. As a mechanism for this response, we found that increasing temperature significantly increases scale insect fecundity and contributes to greater population increase. Specifically, adult female M. tenebricosa egg sets increased by approximately fourteen eggs for every 1° C increase in temperature. Climate change models predict that the global climate will increase by 2-3° C in the next 50-100 years. We found that this same temperature increase resulted in three orders of magnitude more scale insects. This result supports predictions that urban and natural forests will face greater herbivory in the future, and suggests that a primary cause could be direct, positive effects of warming on herbivore fitness rather than altered trophic interactions.
DOI: 10.6084/m9.figshare.1084326.v1
title: Urban warming trumps natural enemy regulation of herbivorous pests

description: Trees provide ecosystem services that counter negative effects of urban habitats on human and environmental health. Unfortunately, herbivorous arthropod pests are often more abundant on urban than rural trees, reducing tree growth, survival, and ecosystem services. Previous research where vegetation complexity was reduced has attributed elevated urban pest abundance to decreased regulation by natural enemies. However, reducing vegetation complexity, particularly the density of over story trees, also makes cities hotter than natural habitats. We ask how urban habitat characteristics influence an abiotic factor, temperature, and a biotic factor, natural enemy abundance, in regulating the abundance of an urban forest pest, the gloomy scale, (Melanaspis tenebricosa). We used a map of surface temperature to select red maple trees (Acer rubrum) at warmer and cooler sites in Raleigh, NC. We quantified habitat complexity by measuring impervious surface cover, local vegetation structural complexity, and landscape scale vegetation cover around each tree. Using path analysis, we determined that impervious surface (the most important habitat variable) increased scale insect abundance by increasing tree temperature, rather than by reducing natural enemy abundance or percent parasitism. As a mechanism for this response, we found that increasing temperature significantly increases scale insect fecundity and contributes to greater population increase. Specifically, adult female M. tenebricosa egg sets increased by approximately fourteen eggs for every 1° C increase in temperature. Climate change models predict that the global climate will increase by 2-3° C in the next 50-100 years. We found that this same temperature increase resulted in three orders of magnitude more scale insects. This result supports predictions that urban and natural forests will face greater herbivory in the future, and suggests that a primary cause could be direct, positive effects of warming on herbivore fitness rather than altered trophic interactions.
DOI: 10.6084/m9.figshare.1084319
title: A multiresolution approach to discrete tomography using DART

description: Simulation phantoms and real datasets to demonstrate MDART
DOI: 10.6084/m9.figshare.1084319.v1
title: A multiresolution approach to discrete tomography using DART

description: Simulation phantoms and real datasets to demonstrate MDART
DOI: 10.6084/m9.figshare.1083874
title: #Evol2014 in tweets

description: Analysis of tweets tagged with #Evol2014, the Twitter hashtag for the Evolution 2014 meetings in Raleigh, North Carolina, from 20 to 24 June 2014.
DOI: 10.6084/m9.figshare.1083873
title: The effects of urban warming on herbivore abundance and street tree condition

description: Trees are essential to urban habitats because they provide services that benefit the environment and improve human health. Unfortunately, urban trees often have more herbivorous insect pests than rural trees but the mechanisms and consequences of these infestations are not well documented. Here, we examine how temperature affects the abundance of a scale insect, Melanaspis tenebricosa (Comstock) (Hemiptera: Diaspididae), on one of the most commonly planted street trees in the eastern U.S. Next, we determine how both pest abundance and temperature are associated with water stress, growth, and condition of 26 urban street trees. Although trees in the warmest urban sites grew the most, they were more water stressed and in worse condition. Our analyses indicate that high temperatures were associated with water stress, while visible declines in tree condition were best explained by scale-insect infestation rather than temperature. To test the broader relevance of these results, we extend our analysis to a database of more than 2700 Raleigh, US street trees. Plotting these trees on a Landsat thermal image of Raleigh, we found that warmer sites had over 70% more trees in poor condition than those in cooler sites. Our results support previous studies linking warmer urban habitats to greater pest abundance and extend this association to show its effect on street tree condition. Our results suggest that street tree condition and ecosystem services may decline as urban expansion and global warming exacerbate the urban heat island effect. This presents a gloomy outlook for urban forests and emphasizes the need for management tools. Existing urban tree inventories and thermal maps could be used to identify species that would be most suitable for urban conditions.
DOI: 10.6084/m9.figshare.1083873.v1
title: The effects of urban warming on herbivore abundance and street tree condition

description: Trees are essential to urban habitats because they provide services that benefit the environment and improve human health. Unfortunately, urban trees often have more herbivorous insect pests than rural trees but the mechanisms and consequences of these infestations are not well documented. Here, we examine how temperature affects the abundance of a scale insect, Melanaspis tenebricosa (Comstock) (Hemiptera: Diaspididae), on one of the most commonly planted street trees in the eastern U.S. Next, we determine how both pest abundance and temperature are associated with water stress, growth, and condition of 26 urban street trees. Although trees in the warmest urban sites grew the most, they were more water stressed and in worse condition. Our analyses indicate that high temperatures were associated with water stress, while visible declines in tree condition were best explained by scale-insect infestation rather than temperature. To test the broader relevance of these results, we extend our analysis to a database of more than 2700 Raleigh, US street trees. Plotting these trees on a Landsat thermal image of Raleigh, we found that warmer sites had over 70% more trees in poor condition than those in cooler sites. Our results support previous studies linking warmer urban habitats to greater pest abundance and extend this association to show its effect on street tree condition. Our results suggest that street tree condition and ecosystem services may decline as urban expansion and global warming exacerbate the urban heat island effect. This presents a gloomy outlook for urban forests and emphasizes the need for management tools. Existing urban tree inventories and thermal maps could be used to identify species that would be most suitable for urban conditions.
DOI: 10.6084/m9.figshare.1083827
title: Supplementary material for "Compact and hot? – Analyzing the influence of urban form on surface urban heat islands in Europe"

description: This file provides supplementary material for the publication "Compact and hot? – Analyzing the influence of urban form on surface urban heat islands in Europe" by Nina Schwarz and Ameur M. Manceur, submitted to the Journal of the American Planning Association and under review. The data set gives data on the surface urban heat island of 274 Larger Urban Zones in Europe, quantifyed using three different indicators and two points in time (morning and evening heat islands for June/July/August 2001). The aim of the study was to identify predictors for explaining the surface urban heat island for these urban regions.
DOI: 10.6084/m9.figshare.1083827.v1
title: Supplementary material for "Compact and hot? – Analyzing the influence of urban form on surface urban heat islands in Europe"

description: This file provides supplementary material for the publication "Compact and hot? – Analyzing the influence of urban form on surface urban heat islands in Europe" by Nina Schwarz and Ameur M. Manceur, submitted to the Journal of the American Planning Association and under review. The data set gives data on the surface urban heat island of 274 Larger Urban Zones in Europe, quantifyed using three different indicators and two points in time (morning and evening heat islands for June/July/August 2001). The aim of the study was to identify predictors for explaining the surface urban heat island for these urban regions.
DOI: 10.6084/m9.figshare.1083788
title: Files to accompany "Examining the role of red background in magnocellular contribution to face perception"

description: Published in PeerJ
DOI: 10.6084/m9.figshare.1083788.v1
title: Files to accompany "Red background impairs magnocellular contribution to holistic face perception"

description: Article is submitted to PLoS ONE and under review