cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5539630.v1
title: Fowl adenovirus-induced diseases and strategies for their control – a review on the current global situation

description: The stand-alone pathogenicity of fowl adenoviruses (FAdVs) had long been disputed, given the ubiquity of the viruses versus sporadic outbreaks, and variation between experimental studies. However, a globally emerging trend of FAdV-associated diseases has marked the past two decades, with hepatitis-hydropericardium syndrome mainly in Asia besides Arabian and Latin American countries, and geographically more disseminated outbreaks of inclusion body hepatitis. Finally, the appearance of FAdV-induced gizzard erosion (AGE) in Asia and Europe completed the range of diseases. Epidemiological studies confirmed serotype FAdV-4 as agent of hepatitis-hydropericardium syndrome, whereas inclusion body hepatitis is related to FAdV-2, -8a, -8b and -11. Members of the biologically more distant serotype FAdV-1 induce AGE. Urged by increasing problems in the field, numerous pathogenicity studies with FAdVs from outbreaks substantiated the primary aetiologic role of particular strains for distinct clinical conditions. Developments in the poultry industry towards highly specialized genetic breeds and rigorous biosecurity additionally contribute to the growing incidence of FAdV-related diseases. Confirming field observations, recent studies connected a higher susceptibility of broilers with their distinct physiology, implying the choice of bird type as a factor to be considered in infection studies. Furthermore, elevated biosecurity standards have generated immunologically naïve breeding stocks, putting broilers at risk in face of vertical FAdV transmission. Therefore, future prevention strategies should include adequate antibodies in breeders prior to production and – if necessary – vaccination, in order to protect progenies. This review aims to deliver a detailed overview on the current global situation about FAdV-induced diseases, their reproduction <i>in vivo</i> and vaccination strategies.
DOI: 10.5281/zenodo.4010237
title: Theater questionnair data and BP neural network prediction network

description: More than 1500 questionnaires were distributed to the three theaters, and a total of 1382 valid questionnaires were collected for this study: 416 in small-scale theater, 478 in medium-scale theater, 488 in large-scale theater.
DOI: 10.6084/m9.figshare.5539612
title: Scripts

description: R scripts for analysis<br>
DOI: 10.6084/m9.figshare.5539615
title: Data

description: data<br>
DOI: 10.6084/m9.figshare.5539618
title: Data_haplotypes

description: data
DOI: 10.6084/m9.figshare.5539627
title: Data_simulated_haplotypes

description: simulated data<br>
DOI: 10.6084/m9.figshare.5539618.v1
title: Data_haplotypes

description: data
DOI: 10.6084/m9.figshare.5539612.v2
title: Scripts

description: R scripts for analysis<br>
DOI: 10.6084/m9.figshare.5539615.v1
title: Data

description: data<br>
DOI: 10.6084/m9.figshare.5539627.v1
title: Data_simulated_haplotypes

description: simulated data<br>
DOI: 10.6084/m9.figshare.5539606
title: readme_files

description: read these first<br>
DOI: 10.6084/m9.figshare.5539612.v1
title: Scripts

description: R scripts for analysis<br>
DOI: 10.6084/m9.figshare.5539606.v2
title: readme_files

description: read these first<br>
DOI: 10.6084/m9.figshare.5539561
title: Table S9: Differential expression of <i>Glossina</i> enzyme coding genes in control and aposymbiotic flies from Unravelling the relationship between the tsetse fly and its obligate symbiont <i>Wigglesworthia</i>: transcriptomic and metabolomic landscapes reveals highly integrated physiological networks

description: This table lists the differential expression of <i>Glossina</i> enzyme coding genes between control and aposymbiotic gut RNA-seq libraries. The table includes the genes, associated KEGG EC code, annotation and results of the differential expression analysis by edgeR.
DOI: 10.6084/m9.figshare.5539606.v1
title: readme_files

description: read these first<br>
DOI: 10.6084/m9.figshare.5539561.v1
title: Table S9: Differential expression of <i>Glossina</i> enzyme coding genes in control and aposymbiotic flies from Unravelling the relationship between the tsetse fly and its obligate symbiont <i>Wigglesworthia</i>: transcriptomic and metabolomic landscapes reveals highly integrated physiological networks

description: This table lists the differential expression of <i>Glossina</i> enzyme coding genes between control and aposymbiotic gut RNA-seq libraries. The table includes the genes, associated KEGG EC code, annotation and results of the differential expression analysis by edgeR.
DOI: 10.6084/m9.figshare.5539213
title: Model Scripts and Support Files

description: The master code and setup files for the hybrid analytical - finite element model defective bearing model is in this file. The model is a SImuLink model that the setup and is ran from a MatLab script. Please the read the ReadMe file as this contains all the information to run the model and modify the model to change loads, speeds, element density and much more.
DOI: 10.6084/m9.figshare.5539204
title: Surface Generating Matlab Scripts

description: Matlab scripts to import and create the defect surfaces for the model and graphs for the journal article. Please read the ReadMe file as this contains information to run the scripts and view the data. All script are in Matlab .m and dat file, but the CT data is a CSV file so it can be read into any program.
DOI: 10.6084/m9.figshare.5539189
title: Patient Satisfaction & Perception - Data File

description: Patient Satisfaction & Treatment Perception
DOI: 10.6084/m9.figshare.5539189.v1
title: Patient Satisfaction & Perception - Data File

description: Patient Satisfaction & Treatment Perception
DOI: 10.6084/m9.figshare.5539123
title: Data File 2: Changes in mRNA levels upon Fhit rescue as assayed by RNA-Seq

description: Data File 2 has two tabs.<br>Data File 2, Tab1 is: Changes in mRNA levels upon Fhit loss as assayed by RNA-Seq. This tab is restricted to significantly changed (Padj≤0.05) mRNAs with at least a ±1.5-fold change.<br>Data File 2, Tab2 is: Changes in mRNA levels upon Fhit loss as assayed by RNA-Seq. This tab is restricted to significantly changed (Padj≤0.05) mRNAs with at least a ±1.1-fold change. All other transcripts were classified as unchanged and are not listed in this table.
DOI: 10.6084/m9.figshare.5539123.v1
title: Data File 2: Changes in mRNA levels upon Fhit rescue as assayed by RNA-Seq

description: Data File 2 has two tabs.<br>Data File 2, Tab1 is: Changes in mRNA levels upon Fhit loss as assayed by RNA-Seq. This tab is restricted to significantly changed (Padj≤0.05) mRNAs with at least a ±1.5-fold change.<br>Data File 2, Tab2 is: Changes in mRNA levels upon Fhit loss as assayed by RNA-Seq. This tab is restricted to significantly changed (Padj≤0.05) mRNAs with at least a ±1.1-fold change. All other transcripts were classified as unchanged and are not listed in this table.
DOI: 10.23641/asha.5538868
title: Language outcomes in children who are deaf and hard of hearing (Daub et al., 2017)

description: <b>Purpose:</b> Early auditory experiences are fundamental in infant language acquisition. Research consistently demonstrates the benefits of early intervention (i.e., hearing aids) to language outcomes in children who are deaf and hard of hearing. The nature of these benefits and their relation with prefitting development are, however, not well understood.<b>Method:</b> This study examined Ontario Infant Hearing Program birth cohorts to explore predictors of performance on the Preschool Language Scale–Fourth Edition at the time of (<i>N </i>= 47) and after (<i>N</i> = 19) initial hearing aid intervention.<b>Results:</b> Regression analyses revealed that, before the hearing aid fitting, severity of hearing loss negatively predicted 19% and 10% of the variance in auditory comprehension and expressive communication, respectively. After hearing aid fitting, children’s standard scores on language measures remained stable, but they made significant improvement in their progress values, which represent individual skills acquired on the test, rather than standing relative to same-age peers. Magnitude of change in progress values was predicted by a negative interaction of prefitting language ability and severity of hearing loss for the Auditory Comprehension scale.<b>Conclusions:</b> These findings highlight the importance of considering a child’s prefitting language ability in interpreting eventual language outcomes. Possible mechanisms of hearing aid benefit are discussed.<br><b>Supplemental Material S1. </b>Hearing Aid Speech Intelligibility Index (SII) values (<i>N</i> = 19) compared to Bagaetto et al., 2011, normative data. <br><b>Supplemental Material S2.</b> Graphs of each child's performance over time with 90% confidence intervals (CIs).<br>Daub, O., Bagatto, M. P., Johnson, A. M., & Cardy, J. O. (2017). Language outcomes in children who are deaf and hard of hearing: The role of language ability before hearing aid intervention. <i>Journal of Speech, Language, and Hearing Research, 60, </i>3310–3320<i>.</i> https://doi.org/10.1044/2017_JSLHR-L-16-0222<br>
DOI: 10.6084/m9.figshare.5538826
title: S7 Table.doc

description: Dimensions of the orbit in three Sapajus sp. linear magnitude of the face interorbital region<br>
DOI: 10.6084/m9.figshare.5538805
title: S6 Table.doc

description: Dimensions of the orbit in Sapajus sp. linear magnitude of the face - orbital region<br>
DOI: 10.6084/m9.figshare.5538712
title: S4 Table.doc

description: Dimensions of the extrinsic muscles of the eye and the elevator of eyelid in <i>Sapajus </i>sp.<br>
DOI: 10.6084/m9.figshare.5538721
title: S5 Table.doc

description: Distances of infraorbital foramina in <i>Sapajus </i>sp.<br>
DOI: 10.6084/m9.figshare.5538826.v1
title: S7 Table.doc

description: Dimensions of the orbit in three Sapajus sp. linear magnitude of the face interorbital region<br>
DOI: 10.6084/m9.figshare.5538709
title: S3 Table.doc

description: Attenuation degree of the orbital bones<br>
DOI: 10.6084/m9.figshare.5538721.v1
title: S5 Table.doc

description: Distances of infraorbital foramina in <i>Sapajus </i>sp.<br>
DOI: 10.6084/m9.figshare.5538712.v1
title: S4 Table.doc

description: Dimensions of the extrinsic muscles of the eye and the elevator of eyelid in <i>Sapajus </i>sp.<br>
DOI: 10.6084/m9.figshare.5538805.v1
title: S6 Table.doc

description: Dimensions of the orbit in Sapajus sp. linear magnitude of the face - orbital region<br>
DOI: 10.6084/m9.figshare.5538709.v1
title: S3 Table.doc

description: Attenuation degree of the orbital bones<br>
DOI: 10.6084/m9.figshare.5538019
title: S1 Table.doc

description: Dimensions and attenuation degrees of the adnexa and eye<br>
DOI: 10.6084/m9.figshare.5538703
title: S2 Table.doc

description: Dimensions and limits of the orbit<br>
DOI: 10.6084/m9.figshare.5538019.v1
title: S1 Table.doc

description: Dimensions and attenuation degrees of the adnexa and eye<br>
DOI: 10.6084/m9.figshare.5538703.v2
title: S2 Table.doc

description: Dimensions and limits of the orbit<br>
DOI: 10.6084/m9.figshare.5538004
title: Imágenes para la Semana de Acceso Abierto, "Abierto para..."

description: Imágenes del proyecto 'Why Open Research' para la Semana de Acceso Abierto 2017, versiones en español. Versiones en inglés https://figshare.com/articles/OAWeek_citizenscience_png/5527900.
DOI: 10.17028/rd.lboro.5537950
title: Series of blogs for School of Business and Economics

description: Series of Blogs written for my School discussing multiple aspects of visual learning to inform fellow academics' own lecture practice<br>
DOI: 10.6084/m9.figshare.5538703.v1
title: Untitled Item

description: Dimensions and limits of the orbit<br>
DOI: 10.17028/rd.lboro.5537944
title: Life after death by powerpoint

description: Chapter written for the UK Higher Education Academy on Visual pedagogy in the digital era as a challenge to logocentric hegemony<br>
DOI: 10.6084/m9.figshare.5537941
title: North_African_Ychromosome_dataset.vcf

description: This file is a VCF (variant call format) that contains information the genotypes of each sample for each position.
DOI: 10.17028/rd.lboro.5537944.v1
title: Life after death by powerpoint

description: Chapter written for the UK Higher Education Academy on Visual pedagogy in the digital era as a challenge to logocentric hegemony<br>
DOI: 10.6084/m9.figshare.5537926
title: Data for scattering paper.

description: This data relates to the paper entitled A Kirchhoff Scattering Model for Millimeter Wavelength Wireless Links. It contains a variety of data types including antenna patterns, wall point clouds, results both modeled and measured.
DOI: 10.6084/m9.figshare.5538004.v2
title: Imágenes para la Semana de Acceso Abierto, "Abierto para..."

description: Imágenes del proyecto 'Why Open Research' para la Semana de Acceso Abierto 2017, versiones en español. Versiones en inglés https://figshare.com/articles/OAWeek_citizenscience_png/5527900.
DOI: 10.6084/m9.figshare.5538004.v1
title: Imágenes para la Semana de Acceso Abierto, "Abierto para..."

description: Imágenes del proyecto 'Why Open Research' para la Semana de Acceso Abierto 2017, versiones en español. Versiones en inglés https://figshare.com/articles/OAWeek_citizenscience_png/5527900.
DOI: 10.6084/m9.figshare.5537884
title: How to incorporate information on propagule pressure in the analysis of alien establishment success - simulation data

description: Data files and R code used in Pigot <i>et al</i>. (2017). How to incorporate information on propagule pressure in the analysis of alien establishment success. <i>Methods in Ecology & Evolution.</i><br>
DOI: 10.6084/m9.figshare.5537893
title: SHARAD Cluttersims from Dundas et al. 2017 Science

description: This fileset contains the SHARAD (Shallow Radar) clutter simulations from the Dundas et al. 2017 Science manuscript "Exposed sheets of subsurface ice in the Martian mid-latitudes".<br>These clutter simulations were generated by Dr. Jack Holt's research group at UTexas. These simulations align with the FPB processor data (U.S. SHARAD team products) that were inspected for the Dundas et al. paper.<br>MOLA-based cluttersims were inspected for all 7 sites + Milankovic crater. These are the files with the naming convention UTSIM_trackNumber-v1.5-4096-Sim.png.<br>HRSC is the High Resolution Stereo Camera onboard Mars Express. Scarps #1 and #5 are in areas where HRSC Digital Terrain Model (DTM) coverage already existed publicly (h2213_0000_dt4.img and h2587_0001_dt4.img, respectively). These DTMs were used to create higher resolution clutter simulations at these two sites. These are the files with the convention UTSIM_trackNumber-HRSC-v1.5-4096-Sim.png.<br><br>Thank you to the JMARS Software (https://jmars.mars.asu.edu/) for their radargram functionality, which aided in comparing the SHARAD tracks to the locations of the icy scarp sites.<br>The SHARAD instrument was provided to NASA’s Mars Reconnaissance Orbiter mission by the Italian Space Agency (ASI).<br>
DOI: 10.6084/m9.figshare.5537893.v1
title: SHARAD Cluttersims from Dundas et al. 2017 Science

description: This fileset contains the SHARAD (Shallow Radar) clutter simulations from the Dundas et al. 2017 Science manuscript "Exposed sheets of subsurface ice in the Martian mid-latitudes".<br>These clutter simulations were generated by Dr. Jack Holt's research group at UTexas. These simulations align with the FPB processor data (U.S. SHARAD team products) that were inspected for the Dundas et al. paper.<br>MOLA-based cluttersims were inspected for all 7 sites + Milankovic crater. These are the files with the naming convention UTSIM_trackNumber-v1.5-4096-Sim.png.<br>HRSC is the High Resolution Stereo Camera onboard Mars Express. Scarps #1 and #5 are in areas where HRSC Digital Terrain Model (DTM) coverage already existed publicly (h2213_0000_dt4.img and h2587_0001_dt4.img, respectively). These DTMs were used to create higher resolution clutter simulations at these two sites. These are the files with the convention UTSIM_trackNumber-HRSC-v1.5-4096-Sim.png.<br><br>Thank you to the JMARS Software (https://jmars.mars.asu.edu/) for their radargram functionality, which aided in comparing the SHARAD tracks to the locations of the icy scarp sites.<br>The SHARAD instrument was provided to NASA’s Mars Reconnaissance Orbiter mission by the Italian Space Agency (ASI).<br>
DOI: 10.6084/m9.figshare.5537926.v2
title: Data for scattering paper.

description: This data relates to the paper entitled A Kirchhoff Scattering Model for Millimeter Wavelength Wireless Links. It contains a variety of data types including antenna patterns, wall point clouds, results both modeled and measured.
DOI: 10.6084/m9.figshare.5537926.v1
title: Data for scattering paper.

description: This data relates to the paper entitled A Kirchhoff Scattering Model for Millimeter Wavelength Wireless Links. It contains a variety of data types including antenna patterns, wall point clouds, results both modeled and measured.
DOI: 10.6084/m9.figshare.5537848
title: An integrated sea-land approach for mapping geomorphological and sedimentological features in an urban microtidal wave-dominated beach: a case study from S Sardinia, western Mediterranean

description: An integrated cartographic approach has been used to summarize different data (geomorphological, sedimentological, hydrodynamic, ecological and anthropic) from an urban microtidal, wave-dominated beach and adjacent inner shelf in a comprehensive and easily readable mapping output. The study area is located in S Sardinia (Italy, Mediterranean Sea) and focuses on Poetto beach. All the data in this study were processed to produce a Main Map (1:6400 scale) showing the key characteristics of the entire area and three detailed secondary maps (1:56,000 and 1:59,000 scale) that include topographic and eco-graphic profiles, the distribution of sedimentary facies and the main anthropic impact. This map, providing detailed information on the beach dynamics, human impact and the marine ecological status of the Poetto urban beach, represents a useful new tool to facilitate environmental conservation and beach management.
DOI: 10.6084/m9.figshare.5537884.v1
title: How to incorporate information on propagule pressure in the analysis of alien establishment success - simulation data

description: Data files used in Pigot <i>et al</i>. (2017). How to incorporate information on propagule pressure in the analysis of alien establishment success. <i>Methods in Ecology & Evolution.</i><br>
DOI: 10.6084/m9.figshare.5537848.v1
title: An integrated sea-land approach for mapping geomorphological and sedimentological features in an urban microtidal wave-dominated beach: a case study from S Sardinia, western Mediterranean

description: An integrated cartographic approach has been used to summarize different data (geomorphological, sedimentological, hydrodynamic, ecological and anthropic) from an urban microtidal, wave-dominated beach and adjacent inner shelf in a comprehensive and easily readable mapping output. The study area is located in S Sardinia (Italy, Mediterranean Sea) and focuses on Poetto beach. All the data in this study were processed to produce a Main Map (1:6400 scale) showing the key characteristics of the entire area and three detailed secondary maps (1:56,000 and 1:59,000 scale) that include topographic and eco-graphic profiles, the distribution of sedimentary facies and the main anthropic impact. This map, providing detailed information on the beach dynamics, human impact and the marine ecological status of the Poetto urban beach, represents a useful new tool to facilitate environmental conservation and beach management.
DOI: 10.6084/m9.figshare.5537809
title: Paul and Patristics Shiny App

description: This interactive Shiny app provides an interactive database for the University of Oxford [Paul and Patristics project](https://paulandpatristics.web.ox.ac.uk).<br>The academic contact for this work is is (Prof. Jennifer Strawbridge)[http://orcid.org/0000-0002-4259-4236]
DOI: 10.6084/m9.figshare.5537845.v1
title: European annual cosmic-ray dose: estimation of population exposure

description: The earth is continually bombarded by high-energy cosmic ray particles, and the worldwide average exposure to cosmic rays represents about 13% of the total annual effective dose received by the population. Therefore, assessment of cosmic ray exposure at the ground level is of great interest to better understand population exposure to ionizing radiation. This paper presents and describes the European Annual Cosmic-Ray Dose Map at 1 km resolution (Main Map). The Main Map displays the annual effective dose that a person may receive from cosmic rays at the ground level, which ranges from 301 to 3955 μSv. Moreover, thanks to the availability of population data, the annual cosmic-ray collective dose has been evaluated and population-weighted average annual effective dose (per capita) due to cosmic ray has been estimated for each European country considered in this study. The accuracy of the present study has been confirmed by comparing our results with those obtained using other models.
DOI: 10.6084/m9.figshare.5537809.v1
title: Paul and Patristics Shiny App

description: This interactive Shiny app provides an interactive database for the University of Oxford [Paul and Patristics project](https://paulandpatristics.web.ox.ac.uk).<br>The academic contact for this work is is (Prof. Jennifer Strawbridge)[http://orcid.org/0000-0002-4259-4236]
DOI: 10.6084/m9.figshare.5537752
title: Properties of Na<sub>2</sub>O–SiO<sub>2</sub> slags in Doré smelting

description: Solubilities of metals in sodium silicate slags have been studied at 1000–1300°C in oxygen pressures of <i>P</i>(O<sub>2</sub>) = 10<sup>−4</sup> to 0.5 atm, in Doré alloy smelting of copper anode slimes. The boundary conditions for the slags were silica saturation, magnesia saturation with about 10 wt% and without BaO. The trace elements studied were copper, gold, palladium, rhodium, and tellurium. The analytical methods used in the phase composition analyses of equilibrated samples, quenched in brine, were electron probe X-ray microanalysis and laser ablation-inductively coupled plasma-mass spectrometry. Thermodynamic features of the slags, trace element solubilities with the given constraints, and their oxidation mechanisms were determined. The data allow optimizing the anode slime-smelting for the metals’ maximum recovery in sodium silicate fluxing.
DOI: 10.6084/m9.figshare.5537788
title: Definitive screening design enables optimization of LC–ESI–MS/MS parameters in proteomics

description: In proteomics, more than 100,000 peptides are generated from the digestion of human cell lysates. Proteome samples have a broad dynamic range in protein abundance; therefore, it is critical to optimize various parameters of LC–ESI–MS/MS to comprehensively identify these peptides. However, there are many parameters for LC–ESI–MS/MS analysis. In this study, we applied definitive screening design to simultaneously optimize 14 parameters in the operation of monolithic capillary LC–ESI–MS/MS to increase the number of identified proteins and/or the average peak area of MS1. The simultaneous optimization enabled the determination of two-factor interactions between LC and MS. Finally, we found two parameter sets of monolithic capillary LC–ESI–MS/MS that increased the number of identified proteins by 8.1% or the average peak area of MS1 by 67%. The definitive screening design would be highly useful for high-throughput analysis of the best parameter set in LC–ESI–MS/MS systems. Definitive screening design enables simultaneous optimization of LC-ESI-MS/MS parameters in proteomics.