cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3678826_d4
title: Additional file 5: Table S3. of Immune and biochemical responses in skin differ between bovine hosts genetically susceptible and resistant to the cattle tick Rhipicephalus microplus

description: Differentially expressed genes (DEGs) in tick-infested skins (with larvae or nymph) within each breed (intra-breed comparisons) compared to stressed skin as named across the sheets. DEGs were calculated using limma R package from Bioconductor software. The up- (positive values) or downregulation (negative values) of genes are displayed in “logFC” column. Abbreviations: SLAr, larvae-infested skin from susceptible bovines; RLar, larvae-infested skin from resistant bovines; SNym, nymph-infested skin from susceptible bovines; RNym, nymph-infested skin from resistant bovines; SLarNym, larvae and nymph-infested skin from susceptible bovines; RLarNym, larvae and nymph-infested skin from resistant bovines. (XLSX 326 kb)
DOI: 10.6084/m9.figshare.c.3678772_d11
title: MOESM9 of A framework for accelerated phototrophic bioprocess development: integration of parallelized microscale cultivation, laboratory automation and Kriging-assisted experimental design

description: Additional file 9. Experimental design and corresponding measurement data evaluated in section “Refining the optimum”.
DOI: 10.6084/m9.figshare.c.3678826_d5.v1
title: Additional file 7: Table S5. of Immune and biochemical responses in skin differ between bovine hosts genetically susceptible and resistant to the cattle tick Rhipicephalus microplus

description: Differentially expressed genes (DEGs) between skins of different breeds (inter-breed comparisons). The types of skin (Bsl, baseline; Str, stressed; Lar, larvae-infested; Nym, nymph-infested) are given for each comparison against the susceptible breed, as named across the sheets. DEGs were calculated using limma R package from Bioconductor software. The up- (positive values) or downregulation (negative values) shown are of expression of genes from skin of the resistant breed compared to susceptible and are displayed in “logFC” column. (XLSX 232 kb)
DOI: 10.6084/m9.figshare.c.3678826_d5
title: Additional file 7: Table S5. of Immune and biochemical responses in skin differ between bovine hosts genetically susceptible and resistant to the cattle tick Rhipicephalus microplus

description: Differentially expressed genes (DEGs) between skins of different breeds (inter-breed comparisons). The types of skin (Bsl, baseline; Str, stressed; Lar, larvae-infested; Nym, nymph-infested) are given for each comparison against the susceptible breed, as named across the sheets. DEGs were calculated using limma R package from Bioconductor software. The up- (positive values) or downregulation (negative values) shown are of expression of genes from skin of the resistant breed compared to susceptible and are displayed in “logFC” column. (XLSX 232 kb)
DOI: 10.6084/m9.figshare.c.3678814_d8.v1
title: Additional file 8: Table S4. of Expansion and stress responses of the AP2/EREBP superfamily in cotton

description: Ks values for segmental duplicated gene pairs of AP2/EREBP superfamily genes in G. raimondii. (XLS 60 kb)
DOI: 10.6084/m9.figshare.c.3678853_d1.v1
title: Additional file 3: Table S2. of Distinct prostate cancer-related mRNA cargo in extracellular vesicle subsets from prostate cell lines

description: Top Regulated Genes: Distinctly different genes between PC-3 MVs vs PNT2 MVs. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3678853_d1
title: Additional file 3: Table S2. of Distinct prostate cancer-related mRNA cargo in extracellular vesicle subsets from prostate cell lines

description: Top Regulated Genes: Distinctly different genes between PC-3 MVs vs PNT2 MVs. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3678814_d8
title: Additional file 8: Table S4. of Expansion and stress responses of the AP2/EREBP superfamily in cotton

description: Ks values for segmental duplicated gene pairs of AP2/EREBP superfamily genes in G. raimondii. (XLS 60 kb)
DOI: 10.15468/dl.bpy27c
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Antimora microlepis Bean, 1890",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 17 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038812-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3680491_d4
title: Additional file 1: Table S1. of Discovery of new candidate genes for rheumatoid arthritis through integration of genetic association data with expression pathway analysis

description: Clinical features of studied groups of patients with RA and healthy controls. Table S2 The expression and replication status of genes, which were grouped in common functional networks with genes previously associated with RA. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.c.3680524_d1
title: Additional file 2: Table S1. of Immunomethylomic approach to explore the blood neutrophil lymphocyte ratio (NLR) in glioma survival

description: Cox proportional hazards survival models including mdNLR, age, grade, mutation status, and chemotherapy and dexamethasone. (see Additional file 2: Table S1.xlsx). (XLS 7Â kb)
DOI: 10.6084/m9.figshare.c.3680524_d1.v1
title: Additional file 2: Table S1. of Immunomethylomic approach to explore the blood neutrophil lymphocyte ratio (NLR) in glioma survival

description: Cox proportional hazards survival models including mdNLR, age, grade, mutation status, and chemotherapy and dexamethasone. (see Additional file 2: Table S1.xlsx). (XLS 7Â kb)
DOI: 10.5281/zenodo.14512929
title: Global expansion and intensification potentials

description: Global expansion and intensification potentials 

as calculated in the publication "Global impacts of future cropland expansion and intensification on agricultural markets and biodiversity" by Zabel et al. (2019). The following spatial data is provided:



Supplementary Figure S1: Biophysical potential for cropland expansion

Supplementary Figure S3: Integrated potential for cropland expansion by 2030

Supplementary Figure S5: Biophysical potential for intensification (2011-2040) in percentage change compared with today’s production.

Supplementary Figure S7: Integrated potential for intensification in percent of potential yield increase compared to statistical yields.


For more details, see publication:

Zabel, F., Delzeit, R., Schneider, J. et al. Global impacts of future cropland expansion and intensification on agricultural markets and biodiversity. Nat Commun 10, 2844 (2019). https://doi.org/10.1038/s41467-019-10775-z
DOI: 10.5281/zenodo.14512930
title: Global expansion and intensification potentials

description: Global expansion and intensification potentials 

as calculated in the publication "Global impacts of future cropland expansion and intensification on agricultural markets and biodiversity" by Zabel et al. (2019). The following spatial data is provided:



Supplementary Figure S1: Biophysical potential for cropland expansion

Supplementary Figure S3: Integrated potential for cropland expansion by 2030

Supplementary Figure S5: Biophysical potential for intensification (2011-2040) in percentage change compared with today’s production.

Supplementary Figure S7: Integrated potential for intensification in percent of potential yield increase compared to statistical yields.


For more details, see publication:

Zabel, F., Delzeit, R., Schneider, J. et al. Global impacts of future cropland expansion and intensification on agricultural markets and biodiversity. Nat Commun 10, 2844 (2019). https://doi.org/10.1038/s41467-019-10775-z
DOI: 10.6084/m9.figshare.c.3680539_d1.v1
title: Additional file 2: of Comparative effectiveness of a serious game and an e-module to support patient safety knowledge and awareness

description: (ZIP 1170 kb)
DOI: 10.6084/m9.figshare.c.3680539_d1
title: Additional file 2: of Comparative effectiveness of a serious game and an e-module to support patient safety knowledge and awareness

description: (ZIP 1170 kb)
DOI: 10.6084/m9.figshare.c.3683116_d3.v1
title: Additional file 4: Table S4. of 
                     MDM2 promoter polymorphism del1518 (rs3730485) and its impact on endometrial and ovarian cancer risk

description: Raw data; genotypes for all individuals in study. (XLSX 118 kb)
DOI: 10.6084/m9.figshare.c.3683116_d3
title: Additional file 4: Table S4. of 
                     MDM2 promoter polymorphism del1518 (rs3730485) and its impact on endometrial and ovarian cancer risk

description: Raw data; genotypes for all individuals in study. (XLSX 118 kb)
DOI: 10.34760/605ca5818eb2e
title: ICU_PRIME
title: ICU patient cohort for study: &quot;Predicting Infection-related Consultations on Intensive Care Units&quot;
DOI: 10.6084/m9.figshare.c.3685279_d1.v1
title: Additional file 2: of Algorithm and software to automatically identify latency and amplitude features of local field potentials recorded in electrophysiological investigation

description: Txt file containing in the first column the time vector in ms, in the second and third ones the recordings in mV. (TXT 781Â kb)
DOI: 10.6084/m9.figshare.c.3685279_d1
title: Additional file 2: of Algorithm and software to automatically identify latency and amplitude features of local field potentials recorded in electrophysiological investigation

description: Txt file containing in the first column the time vector in ms, in the second and third ones the recordings in mV. (TXT 781Â kb)
DOI: 10.6084/m9.figshare.c.3685282_d1.v1
title: Additional file 1 of Building a model for disease classification integration in oncology, an approach based on the national cancer institute thesaurus

description: The “derivative model” is available at: https://github.com/vianneyJouhet/ModelTerminologyIntegrationOncology/tree/master/data . (OWL 31932 kb)
DOI: 10.6084/m9.figshare.c.3685282_d1
title: Additional file 1 of Building a model for disease classification integration in oncology, an approach based on the national cancer institute thesaurus

description: The “derivative model” is available at: https://github.com/vianneyJouhet/ModelTerminologyIntegrationOncology/tree/master/data . (OWL 31932 kb)
DOI: 10.6084/m9.figshare.c.3685279_d2.v1
title: Additional file 7: of Algorithm and software to automatically identify latency and amplitude features of local field potentials recorded in electrophysiological investigation

description: A function that is called by main_script.m to compute the onset and the maximum latencies and amplitudes from the signal time-derivative. Also the functions that guarantee the correct running of main_script.m. To test the algorithm, invoking only main_script.m is necessary (all the other functions must be contained in the same folder). (M 1Â kb)
DOI: 10.6084/m9.figshare.c.3685279_d2
title: Additional file 7: of Algorithm and software to automatically identify latency and amplitude features of local field potentials recorded in electrophysiological investigation

description: A function that is called by main_script.m to compute the onset and the maximum latencies and amplitudes from the signal time-derivative. Also the functions that guarantee the correct running of main_script.m. To test the algorithm, invoking only main_script.m is necessary (all the other functions must be contained in the same folder). (M 1Â kb)
DOI: 10.6084/m9.figshare.c.3685279_d3.v1
title: Additional file 3: of Algorithm and software to automatically identify latency and amplitude features of local field potentials recorded in electrophysiological investigation

description: A script that convert .txt file (containing data) into .mat file. The .txt file must be organized in columns, in which the first one contains the time vector and the others the amplitudes of the recordings. The .mat file will contain a matrix RAT (number of samples x number of sweeps), a vector new_time (number of samples Ă  1) and a struct parameters (parameters.dT: sampling interval; parameters. Fs: sampling frequency; parameters. Ns: number of samples for each sweep). (M 1Â kb)
DOI: 10.6084/m9.figshare.c.3685279_d3
title: Additional file 3: of Algorithm and software to automatically identify latency and amplitude features of local field potentials recorded in electrophysiological investigation

description: A script that convert .txt file (containing data) into .mat file. The .txt file must be organized in columns, in which the first one contains the time vector and the others the amplitudes of the recordings. The .mat file will contain a matrix RAT (number of samples x number of sweeps), a vector new_time (number of samples Ă  1) and a struct parameters (parameters.dT: sampling interval; parameters. Fs: sampling frequency; parameters. Ns: number of samples for each sweep). (M 1Â kb)
DOI: 10.6084/m9.figshare.c.3685291_d1.v1
title: Additional file 4: Table S4. of Melanoma genome evolution across species

description: ZMELR1 vs. ZMEL1 mRNA differential expression. This file contains the differentially expressed genes from RNA-seq of the ZMEL1 line vs. the ZMELR1 line. (XLSX 3569Â kb)
DOI: 10.6084/m9.figshare.c.3685291_d2.v1
title: Additional file 2: Table S2. of Melanoma genome evolution across species

description: ZMEL1 validation primers for MiSeq run. This file contains all of the PCR primer sequences used to validate the subset of 384 called mutations that were validated in the ZMEL1 line via MiSeq. (XLSX 58Â kb)
DOI: 10.6084/m9.figshare.c.3685291_d1
title: Additional file 4: Table S4. of Melanoma genome evolution across species

description: ZMELR1 vs. ZMEL1 mRNA differential expression. This file contains the differentially expressed genes from RNA-seq of the ZMEL1 line vs. the ZMELR1 line. (XLSX 3569Â kb)
DOI: 10.6084/m9.figshare.c.3685279_d4.v1
title: Additional file 5: of Algorithm and software to automatically identify latency and amplitude features of local field potentials recorded in electrophysiological investigation

description: A function that is called by main_script.m to compute the smoothing of the signal and its first-time derivative. Also the functions that guarantee the correct running of main_script.m. To test the algorithm, invoking only main_script.m is necessary (all the other functions must be contained in the same folder). (M 1Â kb)
DOI: 10.6084/m9.figshare.c.3686782_d2.v1
title: MOESM2 of Annual spatiotemporal migration schedules in three larger insectivorous birds: European nightjar, common swift and common cuckoo

description: Additional file 2. Location estimates for individual European nightjars, common swifts and common cuckoos included in the study.
DOI: 10.6084/m9.figshare.c.3686779_d2.v1
title: MOESM3 of Was my science project eaten? A novel approach to validate consumption of marine biologging instruments

description: Additional file 3. Sliding CCF function R code.
DOI: 10.6084/m9.figshare.c.3686782_d2
title: MOESM2 of Annual spatiotemporal migration schedules in three larger insectivorous birds: European nightjar, common swift and common cuckoo

description: Additional file 2. Location estimates for individual European nightjars, common swifts and common cuckoos included in the study.
DOI: 10.15468/mgcxa7
title: Herbier Olivier (Lichens de l'Orne, TL 119)

description: &gt;Lichens collected in 1880
in Orne, 295 plates divided into 6 binders. Original published herbarium: 1
"herbarium of lichens of Orne and Calvados" which included 9
fascicles of 50 species each. (same period as his Flora) Catalog of
collections: Olivier: Analytical flora of lichens of the Orne, purchased in
1893.

Lichens collectés en 1880 dans l'Orne, 295 planches réparties en 6
classeurs. Herbier original publié : 1 "herbier des lichens de l'Orne et
du Calvados" qui comportait 9 fascicules de 50 espèces chacun. (même
époque que sa Flore) Catalogue des collections : Olivier : Flore analytique des
lichens de l’Orne , acheté en 1893
DOI: 10.6084/m9.figshare.c.3686779_d2
title: MOESM3 of Was my science project eaten? A novel approach to validate consumption of marine biologging instruments

description: Additional file 3. Sliding CCF function R code.
DOI: 10.15468/dl.677wes
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Saxifraga glabella Bertol., Saxifraga glabella var. olympica Stoj. & Jordanov)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038813-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3686782_d3.v1
title: MOESM3 of Annual spatiotemporal migration schedules in three larger insectivorous birds: European nightjar, common swift and common cuckoo

description: Additional file 3. Estimated stopovers and timing of European nightjars, common swifts and common cuckoos.
DOI: 10.6084/m9.figshare.c.3686785_d2.v1
title: Additional file 2 of An integrative Bayesian Dirichlet-multinomial regression model for the analysis of taxonomic abundances in microbiome data

description: The dataset comprising the 16S rRNA microbial counts. (ZIP 1280 kb)
DOI: 10.6084/m9.figshare.c.3686782_d3
title: MOESM3 of Annual spatiotemporal migration schedules in three larger insectivorous birds: European nightjar, common swift and common cuckoo

description: Additional file 3. Estimated stopovers and timing of European nightjars, common swifts and common cuckoos.
DOI: 10.6084/m9.figshare.c.3686785_d2
title: Additional file 2 of An integrative Bayesian Dirichlet-multinomial regression model for the analysis of taxonomic abundances in microbiome data

description: The dataset comprising the 16S rRNA microbial counts. (ZIP 1280 kb)
DOI: 10.15468/dl.m894tu
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aphanopus carbo Lowe, 1839",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 20 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038814-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3686785_d3.v1
title: Additional file 3 of An integrative Bayesian Dirichlet-multinomial regression model for the analysis of taxonomic abundances in microbiome data

description: The dataset used for the KEGG orthology groups. (ZIP 718 kb)
DOI: 10.6084/m9.figshare.c.3686779_d4.v1
title: MOESM2 of Was my science project eaten? A novel approach to validate consumption of marine biologging instruments

description: Additional file 2. Time-series depth and temperature records from X-Tag 65821.
DOI: 10.6084/m9.figshare.c.3686785_d3
title: Additional file 3 of An integrative Bayesian Dirichlet-multinomial regression model for the analysis of taxonomic abundances in microbiome data

description: The dataset used for the KEGG orthology groups. (ZIP 718 kb)
DOI: 10.6084/m9.figshare.c.3689125_d1.v1
title: Additional file 2 of Incorporating prior biological knowledge for network-based differential gene expression analysis using differentially weighted graphical LASSO

description: Table S2: The top 10 significant genes based on KDDN and dwgLASSO without prior biological knowledge incorporated. (CSV 4.00 kb)
DOI: 10.6084/m9.figshare.c.3689116_d2.v1
title: Additional file 3: Table S2. of Retinoic acid and TGF-Î˛ signalling cooperate to overcome MYCN-induced retinoid resistance

description: Genes differentially expressed by 24-h RA treatment. (XLSX 73 kb)
DOI: 10.6084/m9.figshare.c.3689125_d1
title: Additional file 2 of Incorporating prior biological knowledge for network-based differential gene expression analysis using differentially weighted graphical LASSO

description: Table S2: The top 10 significant genes based on KDDN and dwgLASSO without prior biological knowledge incorporated. (CSV 4.00 kb)
DOI: 10.6084/m9.figshare.c.3689116_d2
title: Additional file 3: Table S2. of Retinoic acid and TGF-Î˛ signalling cooperate to overcome MYCN-induced retinoid resistance

description: Genes differentially expressed by 24-h RA treatment. (XLSX 73 kb)
DOI: 10.6084/m9.figshare.c.3689125_d2.v1
title: Additional file 1 of Incorporating prior biological knowledge for network-based differential gene expression analysis using differentially weighted graphical LASSO

description: Table S1: The total 58 significant genes along with their associated adjusted p-values. (CSV 1.09 kb)
DOI: 10.6084/m9.figshare.c.3689116_d3.v1
title: Additional file 6: Table S5. of Retinoic acid and TGF-Î˛ signalling cooperate to overcome MYCN-induced retinoid resistance

description: Top 100 ITRs per treatment, as identified by IPA from the RNA-seq data. (XLSX 100 kb)
DOI: 10.6084/m9.figshare.c.3689116_d3
title: Additional file 6: Table S5. of Retinoic acid and TGF-Î˛ signalling cooperate to overcome MYCN-induced retinoid resistance

description: Top 100 ITRs per treatment, as identified by IPA from the RNA-seq data. (XLSX 100 kb)
DOI: 10.6084/m9.figshare.c.3689122_d2.v1
title: Additional file 4: of Semantics-based plausible reasoning to extend the knowledge coverage of medical knowledge bases for improved clinical decision support

description: The ontology used in the ontology-based reasoning is available at https://goo.gl/V2PXKl . (OWL 12Â kb)
DOI: 10.6084/m9.figshare.c.3689116_d4.v1
title: Additional file 5: Table S4. of Retinoic acid and TGF-Î˛ signalling cooperate to overcome MYCN-induced retinoid resistance

description: Genes differentially expressed by 48-h Dox (MYCN overexpression) treatment. (XLSX 86 kb)
DOI: 10.6084/m9.figshare.c.3689125_d2
title: Additional file 1 of Incorporating prior biological knowledge for network-based differential gene expression analysis using differentially weighted graphical LASSO

description: Table S1: The total 58 significant genes along with their associated adjusted p-values. (CSV 1.09 kb)
DOI: 10.6084/m9.figshare.c.3689122_d2
title: Additional file 4: of Semantics-based plausible reasoning to extend the knowledge coverage of medical knowledge bases for improved clinical decision support

description: The ontology used in the ontology-based reasoning is available at https://goo.gl/V2PXKl . (OWL 12Â kb)
DOI: 10.6084/m9.figshare.c.3689116_d4
title: Additional file 5: Table S4. of Retinoic acid and TGF-Î˛ signalling cooperate to overcome MYCN-induced retinoid resistance

description: Genes differentially expressed by 48-h Dox (MYCN overexpression) treatment. (XLSX 86 kb)
DOI: 10.6084/m9.figshare.c.3689119_d2.v1
title: Additional file 4: of Levels of insecticide resistance to deltamethrin, malathion, and temephos, and associated mechanisms in Aedes aegypti mosquitoes from the Guadeloupe and Saint Martin islands (French West Indies)

description: PCA matrix. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3689119_d2
title: Additional file 4: of Levels of insecticide resistance to deltamethrin, malathion, and temephos, and associated mechanisms in Aedes aegypti mosquitoes from the Guadeloupe and Saint Martin islands (French West Indies)

description: PCA matrix. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3690657_d2.v1
title: MOESM1 of Genome-wide association mapping for milk fat composition and fine mapping of a QTL for de novo synthesis of milk fatty acids on bovine chromosome 13

description: Additional file 1: Table S1. SNPs genotyped for the candidate gene map, with rs numbers, positions in base pairs and primer sequences.