cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.20350/digitalcsic/16153
title: Dataset of Unraveling the Genetic Landscape of Eye Migration and Visual Adaptation during Flatfish Metamorphosis

description: Flatfish have evolved their visual system to meet the demands of their environment through a fascinating process of metamorphosis. This morphological transformation involves a significant change in lifestyle from pelagic to benthic, accompanied by changes in body structure to achieve an asymmetrical flat shape. However, the fundamental change lies in the migration of one eye from its original position to the opposite location on the body. Although the role of thyroid hormone in triggering flatfish metamorphosis is well established, the specific gene regulatory network responsible for this extraordinary eye migration is still unknown. Here we show a global view through the creation of a general map of gene expression during the metamorphic process, encompassing both migrant and non-migrant eyes. Our research uncovers significant differences between migrant and non-migrant eyes of turbot in the pre-metamorphic and climax phases, emphasizing genetic disparities crucial for benthic adaptation
DOI: 10.20350/digitalcsic/16145
title: DataSheet4_Understanding how high stocking densities and concurrent limited oxygen availability drive social cohesion and adaptive features in regulatory growth, antioxidant defense and lipid metabolism in farmed gilthead sea bream (Sparus aurata).PDF

description: The study combined the use of biometric, behavioral, physiological and external tissue damage scoring systems to better understand how high stocking densities drive schooling behavior and other adaptive features during the finishing growing phase of farmed gilthead sea bream in the Western Mediterranean. Fish were grown at three different final stocking densities (LD, 8.5 kg/m3; MD, 17 kg/m3; HD, 25 kg/m3). Water oxygen concentration varied between 5 and 6 ppm in LD fish to 3–4 ppm in HD fish with the summer rise of water temperature from 19°C to 26°C (May–July). HD fish showed a reduction of feed intake and growth rates, but they also showed a reinforced social cohesion with a well-defined endogenous swimming activity rhythm with feeding time as a main synchronization factor. The monitored decrease of the breathing/swimming activity ratio by means of the AEFishBIT data-logger also indicated a decreased energy partitioning for growth in the HD environment with a limited oxygen availability. Plasma glucose and cortisol levels increased with the rise of stocking density, and the close association of glycaemia with the expression level of antioxidant enzymes (mn-sod, gpx4, prdx5) in liver and molecular chaperones (grp170, grp75) in skeletal muscle highlighted the involvement of glucose in redox processes via rerouting in the pentose-phosphate-pathway. Other adaptive features included the depletion of oxidative metabolism that favored lipid storage rather than fatty acid oxidation to decrease the oxygen demand as last electron acceptor in the mitochondrial respiratory chain. This was coincident with the metabolic readjustment of the Gh/Igf endocrine-growth cascade that promoted the regulation of muscle growth at the local level rather than a systemic action via the liver Gh/Igf axis. Moreover, correlation analyses within HD fish displayed negative correlations of hepatic transcripts of igf1 and igf2 with the data-logger measurements of activity and respiration, whereas the opposite was found for muscle igf2, ghr1 and ghr2. This was indicative of a growth-regulatory transition that supported a proactive instead of a reactive behavior in HD fish, which was considered adaptive to preserve an active and synchronized feeding behavior with a minimized risk of oxidative stress and epidermal skin damage.
DOI: 10.20350/digitalcsic/16151
title: SimpMedLexSp (Simple Medical Lexicon for Spanish)

description: Links to other publicly accessible locations of the data: https://github.com/lcampillos/CLARA-MeD (Accessed: 12/2/2024).
description: A medical lexicon of 14013 pairs of technical word forms and the corresponding simpli-fied synonym or definition. It is aimed at automatic text simplification in Spanish. A subset of the lexicon (4642 term entries) was also normalized to Unified Medical Language System (UMLS) concept unique identifiers (CUIs). Note that the number of inflected forms was reduced after revision by experts, with regard to the version used in the published article (Campillos-Llanos et al. 2024). This dataset was collected in the CLARA-MeD project, with the goal of simplifying medical texts in the Spanish language and reduce the language barrier to patient's informed decision making. In particular, the project aims at developing linguistic resources for automatic medical term simplification in Spanish; and conducting experiments in automatic text simplification.
description: File List: - simpmedlexsp.dsv: a delimiter-separated value file, with the following data fields: • Field 1: Unified Medical Language System (UMLS) CUI of the entity • Field 2: Term entry • Field 3: Simplified synonym or definition • Field 4: UMLS semantic types(s) • Field 5: the semantic group. - simpmedlexsp_forms.dsv: inflected forms (conjugated verbs and gender/plural variants) and terms not normalized to UMLS CUIs: • Field 1: Term entry • Field 2: Simplified synonym or definition
DOI: 10.20350/digitalcsic/16142
title: Supporting Information Fano-Like Resonance from Disorder Correlation in Vacancy-Doped Photonic Crystals
DOI: 10.20350/digitalcsic/16144
title: Type specimens of the MNCN Herpetology Collection
title: Ejemplares tipo de la colección de Herpetología del MNCN
DOI: 10.20350/digitalcsic/16140
title: Dataset for 3D numerical simulations of fractured specimen

description: This dataset encompasses the input files associated with diverse numerical models investigating the hydro-mechanical behavior of a fractured specimen under different mean effective stresses. The folder contains simulations for Hydro-Mechanical ("HM_") problems. The simulations are conducted for different mean effective stresses ("P03"; "P05"; "P10"; "P15"; and "P20"). Within each subfolder, files with the suffix "_gen.dat" provide input data for the model, encompassing material properties, initial and boundary conditions, and time intervals. Correspondingly, files concluding with "_gri.dat" contain information on the mesh employed. To execute a model, launching the executable "Cb_v9_1_3par4.exe" within each ".gid" folder is sufficient.
description: README.txt (this file) \HM_P03.gid \HM_P05.gid \HM_P10.gid \HM_P15.gid \HM_P20.gid \HM_P20_higherKn.gid
DOI: 10.20350/digitalcsic/16141
title: [Dataset] Anomalous pressure diffusion and deformation in two- and three-dimensional heterogeneous fractured media

description: Data and software for data analysis and to generate the respective figures.
DOI: 10.20350/digitalcsic/16138
title: Xylitol-fed and control microbiota DataSet

description: [Description of methods used for collection/generation of data] Pooled-fecal microbiota from 5-7 years old chlidren was inoculated into the three colon reactors (R1, R2 and R3) of the BFBL gut simulator. The stabilized microbiota were inoculated (1%) with the child pooled fecal sample. After the microbiota stabilization stage, xylitol was added to the system at increasing concentrations (1 g/L, 3 g/L and 5 g/L), three times per day for 7 days for each concentration (samples X). The experiment without addition of xylitol to the BFBL gut simulator was carried out for the same period of time (Control, samples C). During the experimental set up, samples were collected every 24 h from the three colon reactors and centrifuged (11,200 ×g during 10 min at 4 °C), and the pellet was used for bacterial genomic DNA extraction (EZNA® Bacterial DNA Kit, Omega Biotek) and using a FastPrep equipment for mechanical lysis (Bio 101 FastPrep FP120, Savant Instruments). DNA samples were sent to Novogene Europe (Cambridge, UK) for sequencing the V3-V4 region of the 16S rRNA gene amplified by using 341F (5′- CCTAYGGGRBGCASCAG-3′) and 806R (5′-GGA CTACNNGGGTATCTAAT-3′) primers. The PCR products were sequenced on a paired-end Illumina platform (NovaSeq 6000, Illumina) to generate 250 bp paired-end raw reads.
DOI: 10.20350/digitalcsic/16139
title: Near Real Time Surface Ocean Velocity (V.1.0) [Dataset]

description: Sensor: High Frequency Radar: CODAR SeaSonde system, 13.5 MHz; Data acquisition: High Frequency Radar; Time coverage: From 2nd March 2023 at 11.00AM; Time resolution: Hourly; Maps frequency generation: Hourly; Spatial coverage: Latitude range: 39.5851ºN-43.0681ºN Longitude range: 0.06352ºE-4.26898ºE; Spatial resolution: Latitude: 0.027 degrees North - Longitude: 0.03534 degrees East; Spatial grid: WGS 84 / Regular longitude-latitude
DOI: 10.20350/digitalcsic/16137
title: resPrf

description: [Description of methods used for collection/generation of data] Polarimetric Radio Occultation measurement technique.
description: [Methods for processing the data] Processing of Level1b data provided by UCAR (conPhs), and merging with Level2 data provided by UCAR (atmPrf and wetPf2).
description: The Polarimetric Radio Ocultation (PRO) Research Dataset (resPrf) provides the PRO observable Delta Phi as a function of height along with the corresponding standard RO wet thermodynamic profiles. The Delta Phi observable contained in this dataset is created from the processing of the H and V ports of the polarimetric antenna aboard PAZ, that provide information about precipitation and clouds encountered along the ray-paths. The thermodynamics is obtained from the merge of UCAR's atmPrf and wetPf2 level2 retrievals. The aim of the dataset is to foster the scientfic use of the PRO data, which provide unique simultaneous measurements of precipitation and the thermodynamics of the associated environment. In addition, the dataset provides detailed collocated information from independent precipitation sources, as well as radiances from the radiometers aboard the satellites in the Global Precipitation Mission (GPM) constellation. These collocated data are used for validation but also to provide the user with additional context on meteorological events.
description: One file per observation. Approximately between 100-200 observations per day. The individual files are packed in daily zipped tar files. Upon unpacking, the individual files are placed in a folder named after the date.
DOI: 10.20350/digitalcsic/16136
title: Evaluación de La Noche Europea de L@s Investigador@s Andalucía. Open Researchers 2021
title: Evaluation of the European Researchers' Night in Andalusia. Open Researchers 2021

description: El libro de códigos está disponible en español y en traducción al inglés.
description: [ES] La Noche Europea de los Investigadores es un evento de divulgación científica de alcance europeo que muestra de forma divertida e inspiradora la diversidad de la ciencia y su repercusión en la vida cotidiana de los ciudadanos. El evento es una iniciativa de la Comisión Europea y se financia a través de las Acciones Marie Sklodowska Curie (MSCA) del Programa Marco de Investigación e Innovación de la UE. La décima edición se celebró en 371 ciudades europeas, entre ellas las ocho capitales andaluzas el 24 de septiembre de 2021. En Andalucía, más de 80.000 personas participaron en 800 actividades desarrolladas por 2.700 investigadores. Este informe presenta datos significativos para medir el impacto de la Noche Europea de los Investigadores en Andalucía, así como la evaluación realizada por sus participantes: asistentes e investigadores.
description: [EN] The European Researchers' Night is a Europe-wide scientific outreach event that displays the diversity of science and its impact on citizens' daily lives in fun, inspiring ways. The event is an initiative of the European Commission and is funded through the Marie Sklodowska Curie Actions (MSCA) of the EU’s Framework-Programme for Research and Innovation The tenth edition was celebrated in 371 European cities, including the eight Andalusian capitals on September 24, 2021. In Andalusia, over 80,000 people participated in 800 activities carried out by 2,700 researchers. This report presents significant data to measure the impact of the European Researchers' Night in Andalusia, as well as the evaluation conducted by its participants: attendees and researchers.
DOI: 10.20350/digitalcsic/16133
title: Wildcat diet in the Cantabrian Mountains (Spain)

description: [Description of methods used for collection/generation of data] European wildcat scats were collected both systematically in fixed transects and opportunistically, between Dec 2018 and Feb 2020 in western Cantabrian Mountains and between Nov 2014 and April 2020 in Montaña Palentina Natural Park. For each sample we recorded the date and GPS location. Very old-looking scats were never collected. Scats were collected by experienced European wildcat researchers and assigned to European wildcats based on their morphology and smell. Although the certainty of assigning scats to carnivore species has been questioned (Monterroso et al., 2013), experimented researchers can accurately identify European wildcat scats. To assess the researchers’ success in scat identification, a subsample of 135 scats was genetically analysed (Ruiz-Villar et al. 2022). From 123 scats that we could genetically identify, 107 (87%) were from the Felis genus, 15 from Vulpes vulpes and one from Canis sp. The proportion of misidentified fox scats was the same in both study areas. Thus we were confident that Felis scats belong to wildcats considering that (1) wildcats and domestic cats segregate in the Cantabrian Mountains (Rodríguez et al., 2020), and we consequently avoided scat collection in areas used by domestic cats; and (2) no hybrids have been detected in the area so far (Tiesmeyer et al., 2020). To determine the prey species consumed by wildcats we used macroscopic identification of bones, teeth, scales, feathers and other identifiable prey remains extracted from washed scats. We determined the minimum number of individuals for each prey item in each scat based on the repetition of identifiable remains. We used the identification guide by Román (2019) to identify Spanish rodents from bone and teeth remains, and compared reptile and bird remains with specimens preserved in Doñana Biological Station. The study was undertaken with the correspondent permissions of the regional government of Castilla y León (EP/P/128/2019; AUTO/19/34, AUTO/2020/593) and Asturias (AUTO/2019/3267 for Asturias).
description: [EN] This dataset provides the raw results of wildcat, Felis silvestris, diet, by analyses of scats collected in the Cantabriam Mountains (mainly in Montaña Palentina Natural Park, Palencia, and in Western Cantabrian Mountains between the provinces of Asturias and León; Spain) between years 2014 and 2020. The dataset provides information of 683 scats and 3120 prey items, most them rodent species.
description: [ES] Este conjunto de datos proporciona los resultados brutos de la dieta de gatos monteses, Felis silvestris, a través del análisis de excrementos recolectados en la Cordillera Cantábrica (principalmente en el Parque Natural Montaña Palentina, Palencia, y en el oeste de la Cordillera Cantábrica en las provincias de Asturias y León; España) entre los años 2014 y 2020. El conjunto de datos proporciona información de 683 excrementos y 3120 presas, la mayoría especies de roedores.
description: WildcatDiet_Cantabrian_Mountains.xlsx
DOI: 10.20350/digitalcsic/16129
title: Supplemental material for The Potyviridae P1a leader protease contributes to host range specificity

description: Supplemental Figure 1. Sequence analysis of P1-like proteins from several Potyviridae, and in vitro cleavage activity of CVYV P1a. Supplemental Figure 2. HCPro silencing suppressor activity in P1a-containing constructs in the absence of NIa co-expression.
DOI: 10.20350/digitalcsic/16127
title: Inorganic nutrient concentrations of the expedition Malaspina 2010 (Malaspina_2010_Nutrients.xlsx) [Dataset]

description: Description: The Malaspina2010_chlorophyll.xlsx file contains the inorganic nutrient concentration data of the circunnavigation expedition Malaspina 2010, which took place between 14/12/2010 and 14/07/2011 on board the BIO Hespérides. The date and position of the sampling stations are listed in the “Data” sheet of the file. Methods: Water samples for measurement of the concentration of nitrate, nitrite (nitrate + nitrite in leg 1), phosphate and silicate were collected from 3 m depth with a 30-liter Niskin bottle and from selected depths between 10 and 200 m with a Rosette of 24 10-liter Niskin bottles attached to a CTD probe. Inorganic nutrient concentrations were determined by means of a Skalar autoanalyzer, following the standard spectrophotometric procedures described in Grasshoff et al. (1999) and Blasco et al. (2012); in leg 1, nitrite was not determined separately and phosphate was measured using a manual method (Vidal et al. 2012)
DOI: 10.20350/digitalcsic/16128
title: Supplemental material for Heterologous RNA silencing suppressors from both plant- and animal-infecting viruses support Plum pox virus infection

description: Supplementary methods. Table S1. Primers and templates used for PCRs. Table S2. Sequences of PCR primers used in the construction of chimerical viruses. Table S3. List of primers and templates used in PCRs to generate plasmids based on pMDC32. Table S4. Sequences of PCR primers used to construct plasmids based on pMDC32. Fig. S1. Infectivity of chimerical viruses based on plum pox virus. Fig. S2. Infectivity of chimerical viruses based on plum pox virus. Fig. S3. Anti-silencing activity of CaMV P6 proteins.
DOI: 10.20350/digitalcsic/16125
title: Supplemental material: Dicer-like 4 is involved in restricting the systemic movement of Zucchini yellow mosaic virus in Nicotiana benthamiana.
DOI: 10.20350/digitalcsic/16126
title: Supporting information: Roles and programming of ARGONAUTE proteins during Turnip Mosaic Virus infection in Arabidopsis
DOI: 10.20350/digitalcsic/16120
title: Supplementary data: Double-stranded RNA interferes in a sequence-specific manner with infection of representative members of the two viroid families
DOI: 10.20350/digitalcsic/16121
title: Supplementary material: Fast-forward identification of highly effective artificial small RNAs against different Tomato spotted wilt virus isolates
DOI: 10.20350/digitalcsic/16118
title: Supplementary data: Down-regulation of tomato STEROL GLYCOSYLTRANSFERASE 1 perturbs plant development and facilitates viroid infection
DOI: 10.20350/digitalcsic/16119
title: Supplementary data: Transgene-free, virus-based gene silencing in plant by artificial microRNAs derived from minimal precursors
DOI: 10.20350/digitalcsic/16123
title: Supplementary data: A viral suppressor of RNA silencing inhibits ARGONAUTE 1 function by precluding target RNA binding to pre-assembled RISC
DOI: 10.20350/digitalcsic/16124
title: Supplementary data: Identification and characterization of a stress-responsive TAS3-derived tasiRNA in melon
DOI: 10.20350/digitalcsic/16122
title: Supplementary information: Argonaute PIWI domain and microRNA duplex structure regulate small RNA sorting in Arabidopsis
DOI: 10.20350/digitalcsic/16115
title: Supplementary data: Intact RNA structurome reveals mRNA structure-mediated regulation of miRNA cleavage in vivo
DOI: 10.20350/digitalcsic/16116
title: Supporting information: Systemic silencing of an endogenous plant gene by two classes of mobile 21-nucleotide artificial small RNAs
DOI: 10.20350/digitalcsic/16113
title: Delgado-Baquerizo et al. 2023

description: Dataset associated with Delgado-Baquerizo et al. 2023. Biogenic factors explain soil carbon in paired urban and natural ecosystems worldwide.
DOI: 10.20350/digitalcsic/16114
title: Supplementary Data: Fine-tune control of targeted RNAi efficacy by plant artificial small RNAs
DOI: 10.20350/digitalcsic/16111
title: Replication Data for: Density functional theory calculations of facet-engineered TiO2 for H2 evolution performed with the VASP software

description: In this dataset, one can find all the input files, and some key output files, for the first-principles density functional theory (DFT) calculations performed for the article entitled "Facet-engineered TiO2 drives photocatalytic activity and stability of supported noble metal clusters during H2 evolution", which has been authored by: Yufen Chen, Lluís Soler, Claudio Cazorla, Jana Oliveras, Neus. G. Bastús, Víctor Puntes, and Jordi Llorca.
description: Some of the atomic structure files (POSCAR) were generated with the assistance of the VESTA (https://jp-minerals.org/vesta/en/) and VASPKIT (https://vaspkit.com/) softwares. The rest of input files were generated by hand with some text file editors. No special format applies to the input files (i.e., they can be editor with any text edition software). Specific details of the input and output files can be found in the VASP website (https://www.vasp.at/).
DOI: 10.20350/digitalcsic/16112
title: Data Set for Active tectonics, Quaternary stress regime evolution and seismotectonic faults in southern central Hispaniola: implications for the quantitative seismic hazard assessment

description: [EN] These supporting information files provides a Figure with the graphic representation of the catalogue of earthquakes and focal mechanisms compiled for southern central Hispaniola (S1), a Table including the U-Th geochronological results of coral samples (S2), a Text describing the methodology of dynamic fault-slip analysis (S3), a Table describing the sites used to obtain stress tensors from the analysis of fault-slip data sets (S4), a Table including the stress tensors obtained by methods of inversion of fault-slip data (S5), and a Table showing the maximum horizontal stresses and tectonic regimes obtained by inversion methods (S6). Supporting Information S1. Catalogue of earthquakes and focal mechanisms compiled for southern central Hispaniola. Supporting Information S2. U-Th geochronological results of coral samples. Supporting Information S3. Methodology of dynamic fault-slip analysis. Supporting Information S4. Sites used to obtain stress tensors from the analysis of fault-slip data sets. Supporting Information S5. Stress tensors obtained by methods of inversion of fault-slip data. Supporting Information S6. Maximum horizontal stresses and tectonic regimes obtained by inversion methods.
description: These supporting information files provides a Figure with the graphic representation of the catalogue of earthquakes and focal mechanisms compiled for southern central Hispaniola (S1), a Table including the U-Th geochronological results of coral samples (S2), a Text describing the methodology of dynamic fault-slip analysis (S3), a Table describing the sites used to obtain stress tensors from the analysis of fault-slip data sets (S4), a Table including the stress tensors obtained by methods of inversion of fault-slip data (S5), and a Table showing the maximum horizontal stresses and tectonic regimes obtained by inversion methods (S6). Figuras