cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5117779.v1
title: Supplementary 2 from Mice as stowaways? Colonization history of Danish striped field mice

description: Species from the steppe region of Eastern Europe likely colonized Northwestern Europe in connection with agriculture after 6500 BP. The striped field mouse (<i>Apodemus agrarius</i> Pallas, 1783), is a steppe-derived species often found in human crops, that is common on the southern Danish islands of Lolland and Falster, which have been isolated from mainland Europe because approximately10 300–8000 BP. Thus, this species could have been brought in with humans in connection with agriculture, or it could be an earlier natural invader. We sequenced 86 full mitochondrial genomes from the Northwestern range of the striped field mouse, analysed phylogenetic relationships and estimated divergence time. The results supported human-induced colonization of Denmark in the Subatlantic or Subboreal period. A newly discovered population from Central Jutland in Denmark diverged from Falster approximately 100–670 years ago, again favouring human introduction. One individual from Sweden turned out to be a recent introduction from Central Jutland.
DOI: 10.6084/m9.figshare.5117782.v1
title: Data and Code from Monte Carlo profile confidence intervals for dynamic systems

description: Data and code to reproduce the results in both the manuscript and the supplementary text. Files are combined in a plain text tar format. A README file describes the contents of each file.
DOI: 10.6084/m9.figshare.5117755
title: Dataset for: Bronchial microdialysis monitoring of inflammatory response in open abdominal aortic aneurysm repair, an observational study

description: Hypothesis: Aortic surgery results in ischemia-reperfusion injury that induces an inflammatory response and frequent complications. The magnitude of the inflammatory response in blood and bronchi may be associated with the risk of immediate complications. Objectives: To evaluate bronchial microdialysis as a continuous monitoring of cytokines in bronchial epithelial lining fluid (ELF) and to determine whether bronchial ELF cytokine levels reflect the ischemia-reperfusion injury and risk for complications during open abdominal aortic aneurysm (AAA) repair. We measured cytokines in venous blood using microdialysis and in serum for comparison. Methods: Sixteen patients scheduled for elective open AAA repair were included in a prospective observational study. Microdialysis catheters were introduced into a bronchi and a cubital vein. Eighteen cytokines were measured using a Bio-Plex Magnetic Human Cytokine Panel. Measurements and Main Results: Samples were collected before and during cross-clamping of the aorta as well as from 0-60 min and from 60-120 min of reperfusion. The ELF levels of IL-5, IL-6, IL-13, GM-CSF, IL-2, IL-4 and TNF-α increased, whereas IL-7 decreased during reperfusion. Venous levels of IL-1β, IL-4, IL-6, IL-8, IL-10, IL-12, IL-17, MCP-1, MIP-1α, MIP-1β and TNF-α increased and exhibited their highest concentration during reperfusion. Both bronchial and venous cytokine levels correlated with duration of the procedure, critical care days and preoperative kidney disease. Three patients suffered organ failure as a direct consequence of the procedure, and in these patients the bronchial ELF concentrations of seventeen out of 18 cytokines differed significantly from patients without such complications. Conclusions: Bronchial microdialysis is suited for continuous monitoring of inflammation during open AAA repair. The bronchial ELF cytokine levels may be useful in predicting
DOI: 10.6084/m9.figshare.5117755.v1
title: Dataset for: Bronchial microdialysis monitoring of inflammatory response in open abdominal aortic aneurysm repair, an observational study

description: Hypothesis: Aortic surgery results in ischemia-reperfusion injury that induces an inflammatory response and frequent complications. The magnitude of the inflammatory response in blood and bronchi may be associated with the risk of immediate complications. Objectives: To evaluate bronchial microdialysis as a continuous monitoring of cytokines in bronchial epithelial lining fluid (ELF) and to determine whether bronchial ELF cytokine levels reflect the ischemia-reperfusion injury and risk for complications during open abdominal aortic aneurysm (AAA) repair. We measured cytokines in venous blood using microdialysis and in serum for comparison. Methods: Sixteen patients scheduled for elective open AAA repair were included in a prospective observational study. Microdialysis catheters were introduced into a bronchi and a cubital vein. Eighteen cytokines were measured using a Bio-Plex Magnetic Human Cytokine Panel. Measurements and Main Results: Samples were collected before and during cross-clamping of the aorta as well as from 0-60 min and from 60-120 min of reperfusion. The ELF levels of IL-5, IL-6, IL-13, GM-CSF, IL-2, IL-4 and TNF-α increased, whereas IL-7 decreased during reperfusion. Venous levels of IL-1β, IL-4, IL-6, IL-8, IL-10, IL-12, IL-17, MCP-1, MIP-1α, MIP-1β and TNF-α increased and exhibited their highest concentration during reperfusion. Both bronchial and venous cytokine levels correlated with duration of the procedure, critical care days and preoperative kidney disease. Three patients suffered organ failure as a direct consequence of the procedure, and in these patients the bronchial ELF concentrations of seventeen out of 18 cytokines differed significantly from patients without such complications. Conclusions: Bronchial microdialysis is suited for continuous monitoring of inflammation during open AAA repair. The bronchial ELF cytokine levels may be useful in predicting
DOI: 10.6084/m9.figshare.5117644
title: Heavy mineral assemblage of marine sediments as an indicator of provenance and east antarctic ice sheet fluctuations

description: Table showing the linear relationship between the rows and columns of the matrix of correlation coefficients of samples.
DOI: 10.6084/m9.figshare.5117629
title: Dataset for: Do transiently disordered and highly flexible N- and C-terminal tails accelerate the folding rates of globular proteins?

description: Numerous biological proteins exhibit intrinsic disorderness at their termini associated with multifarious functional roles. Here we show a surprising result that increased percent of terminal short transiently disordered regions with enhanced flexibility (TstDREF) is associated with accelerated folding rates of globular proteins. Evolutionary conservation of predicted disorderness at TstDREFs and drastic alteration of folding rates upon point-mutations suggest critical regulatory role(s) of TstDREFs in shaping the folding kinetics. TstDREFs are associated with long-range intra-molecular interactions and the percent of native secondary structural elements physically contacted by TstDREFs exhibit another surprising positive correlation with folding kinetics. These results allow us to infer probable molecular mechanisms behind TstDREF-mediated regulation of folding kinetics that challenge protein biochemists to assess by direct experimental testing.
DOI: 10.6084/m9.figshare.5117644.v1
title: Heavy mineral assemblage of marine sediments as an indicator of provenance and east antarctic ice sheet fluctuations

description: Table showing the linear relationship between the rows and columns of the matrix of correlation coefficients of samples.
DOI: 10.6084/m9.figshare.5117590
title: Detrital zircon U–Pb geochronology and Hf isotope geochemistry of metasedimentary strata in the southern Brooks Range: constraints on Neoproterozoic–Cretaceous evolution of Arctic Alaska

description: Zircon U–Pb and Lu–Hf isotopic data tables.
DOI: 10.6084/m9.figshare.5117581
title: Detrital zircon U–Pb geochronology and Hf isotope geochemistry of metasedimentary strata in the southern Brooks Range: constraints on Neoproterozoic–Cretaceous evolution of Arctic Alaska

description: Zircon U–Pb and Lu–Hf isotopic data tables.
DOI: 10.6084/m9.figshare.5117590.v1
title: Detrital zircon U–Pb geochronology and Hf isotope geochemistry of metasedimentary strata in the southern Brooks Range: constraints on Neoproterozoic–Cretaceous evolution of Arctic Alaska

description: Zircon U–Pb and Lu–Hf isotopic data tables.
DOI: 10.6084/m9.figshare.5117587
title: Detrital zircon U–Pb geochronology and Hf isotope geochemistry of metasedimentary strata in the southern Brooks Range: constraints on Neoproterozoic–Cretaceous evolution of Arctic Alaska

description: Zircon U–Pb and Lu–Hf isotopic data tables.
DOI: 10.17028/rd.lboro.5117569
title: Optimisation of Co2MnSi thin films and ANE

description: Characterisation of Co2MnSi thin films and corresponding ANE measurements.<br>Origin dataset associated with article: Anomalous Nernst Effect in Co<sub>2</sub>MnSi Thin Films<br>AbstractSeparation of the anomalous Nernst and spin Seebeck voltages in bilayer devices is often problematic when both layers are metallic, and the anomalous Nernst effect becomes non-negligible. Co2MnSi, a strong candidate for the spin generator in spin Seebeck devices, is a predicted half-metal with 100% spin polarisation at the Fermi energy, however, typically B2 or L21 order is needed to achieve this. We demonstrate the optimisation of thin film growth of Co2MnSi on glass, where choice of deposition and annealing temperature can promote various ordered states. The contribution from the anomalous Nernst Effect (ANE) is then investigated to inform future measurements of the spin Seebeck. A maximum ANE coefficient of 0.662μV/K is found for an A2 disordered polycrystalline Co2MnSi film. This value is comparable to ordered Heusler thin films deposited on to single crystal substrates but obtained at a far lower fabrication temperature and material cost.<br>
DOI: 10.6084/m9.figshare.5117575
title: Oxidative stress affects sperm performance and ejaculate redox status in subordinate house sparrows

description: Data used in doi:10.1242/jeb.154799<br>
DOI: 10.6084/m9.figshare.5117587.v1
title: Detrital zircon U–Pb geochronology and Hf isotope geochemistry of metasedimentary strata in the southern Brooks Range: constraints on Neoproterozoic–Cretaceous evolution of Arctic Alaska

description: Zircon U–Pb and Lu–Hf isotopic data tables.
DOI: 10.17028/rd.lboro.5117557
title: Yttrium iron garnet (YIG) spin Seebeck effect (SSE) study

description: Magnetic and structural characterisation of YIG pellets prepared via solid state method where the YIG/YIP ratio varied.<br>Includes final figures for journal (origin project) as well as raw data in a zip file.
DOI: 10.6084/m9.figshare.5117575.v1
title: Oxidative stress affects sperm performance and ejaculate redox status in subordinate house sparrows

description: Data used in doi:10.1242/jeb.154799<br>
DOI: 10.17028/rd.lboro.5117557.v1
title: Yttrium iron garnet (YIG) spin Seebeck effect (SSE) study

description: Magnetic and structural characterisation of YIG pellets prepared via solid state method where the YIG/YIP ratio varied.<br>Includes final figures for journal (origin project) as well as raw data in a zip file.
DOI: 10.6084/m9.figshare.5117467
title: Sequences Data from : "Large variation in the ratio of mitochondrial to nuclear mutation rate across animals : implications for genetic diversity and the use of mitochondrial DNA as a molecular marker"

description: This is the datasets used in the manuscript entitled : "Large variation in the ratio of mitochondrial to nuclear mutation rate across animals : implications for genetic diversity and the use of mitochondrial DNA as a molecular marker" submitted to Molecular Biology and Evolution<br><br>Authors : Remi Allio, Stefano Donega, Nicolas Galtier, Benoit Nabholz<br>Contact : Benoit Nabholz benoit.nabholz@umontpellier.fr<br><br>The folder DataMolPhylEvol containts the 122 datasets analysed in the multilocus analysis. Within this folder, the folders "Data" have number that correspond to the number provided in Table S1. Each datasets include fasta files. Fasta files with names ending by _3rd.fst contain third codon positions and those ending by _full.fst contain all codon position alignments.<br><br>The folder phylogenomic contains the four datasets analysed in the phylogenomic analysis. Each dataset is composed of a nuclear and a mitochondrial folder in which nuclear and mitochondrial alignments are stored in fasta format. As for the DataMolPhylEvol, the fasta files with names ending by _3rd.fst contain third codon positions and those ending by _full.fst contain all codon position alignments.<br><br>
DOI: 10.15131/shef.data.5117461
title: Data for paper: Imaging seminiferous tubules – a 9.4T MRI mouse model

description: Data for paper: Herigstad M., Granados-Aparici S., Pacey A., Paley M. and Reynolds S. (2017) Imaging seminiferous tubules - a 9.4T MRI mouse model. bioRxiv. https://doi.org/10.1101/155762<br>Structural (RARE) MRI data of sacrificed mouse testes (in situ and in vivo), region of interest masks and calculations (MAT files) of testes volume based on MRI data, histology slices of sacrificed mouse testes.
DOI: 10.6084/m9.figshare.5117458
title: Ulmus minor chorology

description: Distribution map of field elm (<i>Ulmus minor</i>)<br><br>These maps were produced by combining numerous and heterogeneous data collected from atlas monographs providing complete species distribution maps, from national to regional atlases, occurrence geo-databases, scientific and grey literature.<br>The maps were created using ESRI shapefiles (*.shp, *.shx, *.dbf, *.prj files) archived in the ZIP file. Species range is mapped with polygon features (name suffix "plg"), which define continuous areas of occupancy of the species, and with point features (name suffix "pnt"), which identify more fragmented and isolated populations. If synanthropic occurrences are reported outside the species natural range, additional point and/or polygon shapefiles are also present (suffix "syn"). <br>Polygon borders delimiting species ranges are generalized across the mainland and sea boundaries. This offers the possibility to mask sea areas or to clip and extract the terrestrial range parts using GIS data layers of the users' choice. An additional version of polygon ranges are clipped with a coastline (name suffix "clip"), which have been derived from Natural Earth dataset "Admin 0 - Countries" 1:50M version 4.1.0 (https://www.naturalearthdata.com). <br><br>Please cite as:<br>Caudullo, G., Welk, E., San-Miguel-Ayanz, J., 2017. Chorological maps for the main European woody species. Data in Brief 12, 662-666. DOI: doi.org/10.1016/j.dib.2017.05.007 <br><br>Additional information and used references are on 'supplementary materials' document:<br>https://doi.org/10.6084/m9.figshare.5091901<br><br>Chorological maps are part of the "European Atlas of Forest Tree Species" project:<br>https://w3id.org/mtv/FISE-Comm/v01
DOI: 10.6084/m9.figshare.5117467.v1
title: Sequences Data from : "Large variation in the ratio of mitochondrial to nuclear mutation rate across animals : implications for genetic diversity and the use of mitochondrial DNA as a molecular marker"

description: This is the datasets used in the manuscript entitled : "Large variation in the ratio of mitochondrial to nuclear mutation rate across animals : implications for genetic diversity and the use of mitochondrial DNA as a molecular marker" submitted to Molecular Biology and Evolution<br><br>Authors : Remi Allio, Stefano Donega, Nicolas Galtier, Benoit Nabholz<br>Contact : Benoit Nabholz benoit.nabholz@umontpellier.fr<br><br>The folder DataMolPhylEvol containts the 122 datasets analysed in the multilocus analysis. Within this folder, the folders "Data" have number that correspond to the number provided in Table S1. Each datasets include fasta files. Fasta files with names ending by _3rd.fst contain third codon positions and those ending by _full.fst contain all codon position alignments.<br><br>The folder phylogenomic contains the four datasets analysed in the phylogenomic analysis. Each dataset is composed of a nuclear and a mitochondrial folder in which nuclear and mitochondrial alignments are stored in fasta format. As for the DataMolPhylEvol, the fasta files with names ending by _3rd.fst contain third codon positions and those ending by _full.fst contain all codon position alignments.<br><br>
DOI: 10.15131/shef.data.5117461.v1
title: Data for paper: Imaging seminiferous tubules – a 9.4T MRI mouse model

description: Data for paper: Herigstad M., Granados-Aparici S., Pacey A., Paley M. and Reynolds S. (2017) Imaging seminiferous tubules - a 9.4T MRI mouse model. bioRxiv. https://doi.org/10.1101/155762<br>Structural (RARE) MRI data of sacrificed mouse testes (in situ and in vivo), region of interest masks and calculations (MAT files) of testes volume based on MRI data, histology slices of sacrificed mouse testes.
DOI: 10.6084/m9.figshare.5117455
title: Ulmus laevis chorology

description: Distribution map of European white elm (<i>Ulmus laevis</i>)<br><br>These maps were produced by combining numerous and heterogeneous data collected from atlas monographs providing complete species distribution maps, from national to regional atlases, occurrence geo-databases, scientific and grey literature.<br>The maps were created using ESRI shapefiles (*.shp, *.shx, *.dbf, *.prj files) archived in the ZIP file. Species range is mapped with polygon features (name suffix "plg"), which define continuous areas of occupancy of the species, and with point features (name suffix "pnt"), which identify more fragmented and isolated populations. If synanthropic occurrences are reported outside the species natural range, additional point and/or polygon shapefiles are also present (suffix "syn"). <br>Polygon borders delimiting species ranges are generalized across the mainland and sea boundaries. This offers the possibility to mask sea areas or to clip and extract the terrestrial range parts using GIS data layers of the users' choice. An additional version of polygon ranges are clipped with a coastline (name suffix "clip"), which have been derived from Natural Earth dataset "Admin 0 - Countries" 1:50M version 4.1.0 (https://www.naturalearthdata.com). <br><br>Please cite as:<br>Caudullo, G., Welk, E., San-Miguel-Ayanz, J., 2017. Chorological maps for the main European woody species. Data in Brief 12, 662-666. DOI: doi.org/10.1016/j.dib.2017.05.007 <br><br>Additional information and used references are on 'supplementary materials' document:<br>https://doi.org/10.6084/m9.figshare.5091901<br><br>Chorological maps are part of the "European Atlas of Forest Tree Species" project:<br>https://w3id.org/mtv/FISE-Comm/v01<br><br>
DOI: 10.6084/m9.figshare.5117458.v1
title: Ulmus minor chorology

description: Distribution map of field elm (<i>Ulmus minor</i>)<br><br>These maps were produced by combining numerous and heterogeneous data collected from atlas monographs providing complete species distribution maps, from national to regional atlases, occurrence geodatabases and scientific literature.<br>The maps were created using ESRI shapefiles (*.shp, *.shx, *.dbf, *.prj files) archived in the ZIP file. Species range is mapped with polygon features (name suffix “plg”), which define continuous areas of occupancy of the species, and with point features (name suffix “pnt”), which identify more fragmented and isolated populations. If synanthropic occurrences are reported outside the species natural range, additional point and/or polygon shapefiles are also present (suffix “syn”).<br>All polygon borders delimiting the range are generalized across the mainland and sea boundaries, and not clipped to a specific coastline. This offers the possibility to mask sea areas, or to clip and extract the terrestrial range parts using GIS data layers of the users’ choice. <br><br>Please cite as:<br>Caudullo, G., Welk, E., San-Miguel-Ayanz, J., 2017. Chorological maps for the main European woody species. Data in Brief 12, 662-666. DOI: doi.org/10.1016/j.dib.2017.05.007 <br><br>Additional information and used references are on 'supplementary materials' document:<br>https://doi.org/10.6084/m9.figshare.5091901<br><br>Chorological maps are part of the "European Atlas of Forest Tree Species" project:<br>https://w3id.org/mtv/FISE-Comm/v01
DOI: 10.6084/m9.figshare.5117446
title: Tilia platyphyllos chorology

description: Distribution map of large-leaved lime (<i>Tilia platyphyllos</i>)<br><br>These maps were produced by combining numerous and heterogeneous data collected from atlas monographs providing complete species distribution maps, from national to regional atlases, occurrence geo-databases, scientific and grey literature.<br>The maps were created using ESRI shapefiles (*.shp, *.shx, *.dbf, *.prj files) archived in the ZIP file. Species range is mapped with polygon features (name suffix "plg"), which define continuous areas of occupancy of the species, and with point features (name suffix "pnt"), which identify more fragmented and isolated populations. If synanthropic occurrences are reported outside the species natural range, additional point and/or polygon shapefiles are also present (suffix "syn"). <br>Polygon borders delimiting species ranges are generalized across the mainland and sea boundaries. This offers the possibility to mask sea areas or to clip and extract the terrestrial range parts using GIS data layers of the users' choice. An additional version of polygon ranges are clipped with a coastline (name suffix "clip"), which have been derived from Natural Earth dataset "Admin 0 - Countries" 1:50M version 4.1.0 (https://www.naturalearthdata.com). <br><br>Please cite as:<br>Caudullo, G., Welk, E., San-Miguel-Ayanz, J., 2017. Chorological maps for the main European woody species. Data in Brief 12, 662-666. DOI: doi.org/10.1016/j.dib.2017.05.007 <br><br>Additional information and used references are on 'supplementary materials' document:<br>https://doi.org/10.6084/m9.figshare.5091901<br><br>Chorological maps are part of the "European Atlas of Forest Tree Species" project:<br>https://w3id.org/mtv/FISE-Comm/v01
DOI: 10.6084/m9.figshare.5117455.v1
title: Ulmus laevis chorology

description: Distribution map of European white elm (<i>Ulmus laevis</i>)<br><br>These maps were produced by combining numerous and heterogeneous data collected from atlas monographs providing complete species distribution maps, from national to regional atlases, occurrence geodatabases and scientific literature.<br>The maps were created using ESRI shapefiles (*.shp, *.shx, *.dbf, *.prj files) archived in the ZIP file. Species range is mapped with polygon features (name suffix “plg”), which define continuous areas of occupancy of the species, and with point features (name suffix “pnt”), which identify more fragmented and isolated populations. If synanthropic occurrences are reported outside the species natural range, additional point and/or polygon shapefiles are also present (suffix “syn”).<br>All polygon borders delimiting the range are generalized across the mainland and sea boundaries, and not clipped to a specific coastline. This offers the possibility to mask sea areas, or to clip and extract the terrestrial range parts using GIS data layers of the users’ choice. <br><br>Please cite as:<br>Caudullo, G., Welk, E., San-Miguel-Ayanz, J., 2017. Chorological maps for the main European woody species. Data in Brief 12, 662-666. DOI: doi.org/10.1016/j.dib.2017.05.007 <br><br>Additional information and used references are on 'supplementary materials' document:<br>https://doi.org/10.6084/m9.figshare.5091901<br><br>Chorological maps are part of the "European Atlas of Forest Tree Species" project:<br>https://w3id.org/mtv/FISE-Comm/v01<br><br>