cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13099922.v1
title: PASSIVE STIFFNESS OF FIBROTIC SKELETAL MUSCLE IN MDX MICE RELATES TO COLLAGEN ARCHITECTURE

description: Fibrosis is prominent in many skeletal muscle pathologies including dystrophies, neurological disorders, cachexia, chronic kidney disease, sarcopenia, and metabolic disorders. Fibrosis in muscle is associated with decreased contractile forces and increased passive stiffness that limits joint mobility leading to contractures. However, the assumption that more fibrotic material is directly related to decreased function has not held true. Here we utilize novel measurement of ECM and collagen architecture to relate ECM form to muscle function. We used <i>mdx</i> mice, a model for Duchenne muscular dystrophy that becomes fibrotic, and wildtype mice. In this model extensor digitorum longus (EDL) muscle was significantly stiffer, but with similar total collagen while the soleus muscle did not change stiffness, but increased collagen. The stiffness of the EDL was associated with increased collagen cross-linking as determined by collagen solubility. Measurement of ECM alignment using polarized light microscopy showed a robust relationship between stiffness and alignment for wildtype muscle that broke down in <i>mdx</i> muscles. Direct visualization of large collagen fibers with second harmonic generation imaging revealed their relative abundance in stiff muscles. Collagen fiber alignment was linked to stiffness across all muscles investigated and the most significant factor in a multiple linear regression-based model of muscle stiffness from ECM parameters. This work establishes novel characteristics of skeletal muscle ECM architecture and provides evidence for mechanical function of collagen fibers in muscle. This finding suggests that anti-fibrotic strategies to enhance muscle function and excessive stiffness should target large collagen fibers and their alignment rather than total collagen.
DOI: 10.6084/m9.figshare.16742479.v1
title: RF_imputed_rescaled1

description: Experimental averages, management, and environmental data for every experiment, across all genotypes, including sites with missing lat/longs:<br>Random-forest imputed data for each site, rescaled to zero mean and unit variance, including linearly interpolated satellite data, environment and management variables. Each is the first of 25 large imputations. Contact me for the entire (bulky) dataset.
DOI: 10.17632/3zz6txz35t
title: FOSD Male Speech Dataset

description: This is FOSD-based (extracted from approximately 30-hour of FPT Open Speech Data, released publicly in 2018 by FPT Corporation, under FPT Public License) Male Speech Dataset which is useful for creating text-to-speech model. It comprises of 9474 audio files totalling more than 10.5 recording hours. All files are in *.wav format (16 kHz sampling rate, 32-bit float, mono). This dataset is useful for various TTS-related applications. Copyright 2018 FPT Corporation Permission is hereby granted, free of charge, non-exclusive, worldwide, irrevocable, to any person obtaining a copy of this data or software and associated documentation files (the “Data or Software”), to deal in the Data or Software without restriction, including without limitation the rights to use, copy, modify, remix, transform, merge, build upon, publish, distribute and redistribute, sublicense, and/or sell copies of the Data or Software, for any purpose, even commercially, and to permit persons to whom the Data or Software is furnished to do so, subject to the following conditions: The above copyright notice, and this permission notice, and indication of any modification to the Data or Software, shall be included in all copies or substantial portions of the Data or Software. THE DATA OR SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE DATA OR SOFTWARE OR THE USE OR OTHER DEALINGS IN THE DATA OR SOFTWARE. Patent and trademark rights are not licensed under this FPT Public License.
DOI: 10.17632/nd4kffgwrb
title: Data for: Experimental design and data on the adsorption and photocatalytic properties of boron nitride/cadmium aluminate composite for Cr(VI) and cefoxitin sodium antibiotic

description: This data contains the results
DOI: 10.6084/m9.figshare.28622459.v1
title: Source Data 20250319

description: This dataset includes the source data of all the figures and tables in the article.
DOI: 10.6084/m9.figshare.103769.v1
title: Root lengths of Col-0 WT, vtc1-1, svt2 (M1) and Ler-0 WT (mm)

description: Root length in seven-day-old seedlings grown on 1x MS
DOI: 10.6084/m9.figshare.20182166.v2
title: Prediction of protein allosteric signalling pathways and functional residues through paths of optimised propensity (results data)

description: On the top level the Results_Data.zip file contains three folders which are described in detail below: 1. Propensity_Optimised_Paths contains all the paths between the allosteric and orthosteric sites calculated for each PDB structure. 2. PDK1_Ligands_Ranking includes all the paths between the allosteric and orthosteric sites calculated for each allosteric ligand-bound PDK1 structure. 3. Bond_to_Bond_Propensities contains the PDB files and propensity results.
DOI: 10.6084/m9.figshare.26426578.v1
title: Flavones enrich rhizosphere <i>Pseudomonas</i> to enhance nitrogen utilization and secondary root growth in Populus

description: Plant growth behavior is a function of genetic network architecture. The importance of root microbiome variation driving plant functional traits is increasingly recognized, but the genetic mechanisms governing this variation are less studied. Here, we collected roots and rhizosphere soils from nine Populus species belonging to four sections (Leuce, Aigeiros, Tacamahaca, and Turanga), generated metabolite and transcription data for roots and microbiota data for rhizospheres, and conducted comprehensive multi-omics analyses. We demonstrated that the roots of vigorous Leuce poplar enriched more Pseudomonas, compared with the poorly performing poplar. Moreover, we confirmed that Pseudomonas was strongly associated with tricin and apigenin biosynthesisand identified that gene GLABRA3 (GL3) was critical for tricin secretion. The elevated tricin secretion via constitutive transcription of PopGL3 and Chalcone synthase (PopCHS4) could drive Pseudomonas colonization in the rhizosphere and further enhance poplar growth, nitrogen acquisition, and secondary root development in nitrogen-poor soil. This study revealed plant-metabolite-microbe regulation patterns contribute to the poplar fitness and thoroughly decoded the key regulatory mechanisms of tricin, and provided new insights into the interactions of the plant’s key metabolites with its transcriptome, rhizosphere microbes.
DOI: 10.6084/m9.figshare.26950660.v1
title: <b>A multi-spectral and hyperspectral image dataset for evaluating the health status of avocado, olive and vineyard</b>

description: This dataset contains multi-spectral images, reflectance values in the NIR and SWIR region (350 - 2500 nm), weight, leaf moisture content, chlorophyll, and nitrogen content of leaves from avocado, olive, and vineyard trees. The dataset is composed of 106 leaves of avocado, 111 leaves of vineyard, and 106 leaves of grape trees. The samples underwent a dehydration process in an oven, resulting in a total of 5 dehydration stages. The multi-spectral images are presented as 5 files from the Blue, Green, Red, Red-Edge and Near Infrared band as .tif files. Radiometric calibration was performed on the images, following Micasense guidance procedures.
DOI: 10.6084/m9.figshare.27981734.v1
title: Supplemental Materials_12.03.2024 Final 12.3.24 .xlsx

description: These supplementary materials related to the publication entitled: Optimizing Exclusion Criteria for Clinical Trials of Persistent Lyme Disease Using Real-World Data by Lorraine Johnson, JD, MBA, Mira Shapiro, MSc , Deanna Needell PhDand Raphael B. Stricker, MD. Abstract: Although eligibility criteria for clinical trials significantly impact study outcomes, these criteria are often established without scientific justification, leading to delayed recruitment, small sample sizes, and limited study generalizability. Persistent Lyme disease (PLD) presents unique challenges due to symptom variability, inconsistent treatment responses and the lack of reliable biomarkers, underscoring the need for scientifically justified eligibility criteria. <b>Objective:</b> This study examines the effects of commonly used enrollment criteria on sample yield in PLD clinical trials using real-world data (RWD) from the MyLymeData patient registry. The study also compares the effects of these criteria on enrollment for PLD versus acute Lyme disease (ALD) trials and evaluates the scientific rationale for each criterion. <b>Methods:</b> Data from 4,183 Lyme disease patients enrolled in the MyLymeData registry were analyzed to assess the prevalence and cumulative impact of various criteria on sample yield. A comparative analysis of cohorts with PLD (n=3,589) versus ALD (n=594) was conducted to identify differences in sample attrition. <b>Results:</b> In a large PLD cohort study, we found that current commonly used eligibility criteria would exclude approximately 90% of patients, significantly limiting study generalizability. Substantial differences in sample attrition between PLD and ALD cohorts highlight the need for tailored criteria. The strength of scientific justification varied widely among criteria. <b>Conclusion:</b> This study demonstrates the importance of using RWD to optimize eligibility criteria in PLD clinical trials. By providing insights into the balance between sample attrition and scientific justification, researchers can enhance trial feasibility, generalizability, and robustness. Our RWD sample demonstrates that researchers could substantially increase the sample yield from 10% to 64% by loosening restrictions on coinfections and misdiagnoses of chronic fatigue syndrome, fibromyalgia, and psychiatric conditions.
DOI: 10.6084/m9.figshare.28919918.v1
title: Mouse organogenesis scRNA-seq E8.5

description: AnnData object, containing scRNA-seq gene expression values corresponding to the embryonic day (E) 8.5 subset of Pijuan-Sala et al., Nature 2019.Contains raw data for 16,496 cells and 18,499 genes, as well as cell type annotations and embeddings.
DOI: 10.6084/m9.figshare.9828827.v4
title: Harmonization of DMSP and VIIRS nighttime light data from 1992-2018 at the global scale

description: The dataset contains (1) temporally calibrated DMSP-OLS NTL time series data from 1992-2013; and (2) converted NTL time series from the VIIRS data (2014-2019)<br>Spatial resolution: 30 arc-seconds (~1km)<br>Information about the composited images from the calibrated DMSP dataset:F10(1992-1994); F12(1995-1996); F14(1997-2003); F16(2004-2009); F18(2010-2013)<br>We suggested using pixels with DN values greater than 7.
DOI: 10.6084/m9.figshare.12672260.v1
title: MVLR DevOps in an ISO 13485 - Quotations

description: Quote identification from the sources
DOI: 10.6084/m9.figshare.26332366.v1
title: Data and scripts of "A straightforward workflow to explore species diversity using the Patagonian lizards of the <i>Diplolaemus </i>genus (Iguania: Leiosauridae) as a study case, with the description of a new species" by Juan Vrdoljak, Kevin Imanol Sánchez, Andrea González-Marín, Mariana Morando and Luciano Javier Avila.

description: The file “genetic analyses.zip” corresponds to the data and analyses for step 1, 2 and 4, and the gene flow analyses from step 3.<br>Details:- data/ includes all data matrices- AIM/ includes the .xml that specifies the analysis parameters to run in Beast- bpp/ and ibpp/ includes the controlfile with the analysis specifications and all outputs.- IQtree/ includes the analysis specifications for each fragment in the .log file and treefiles/ includes the MV trees.<br>The file “morpho.rar” corresponds to the data and R scripts analyses for the step 3<br>Details:<br>-images/ includes photographs taken for geometric morphometrics-linear morph/ data for linear morphometrics-Rdata/ saved analysis results in R-tables geom/ data for geometric morphometrics-script
DOI: 10.6084/m9.figshare.19807858.v4
title: Spectral and npFe datasets for Lu et al. 2022 NA-CE5

description: Reflectance and npFe abundance maps around CE-5 landing site. Citation: Lu, X., Chen, J., Ling, Z., et al., (2022), Mature lunar soils from Fe-rich and young mare basalts in the Chang'e-5 regolith samples. Nature Astronomy. https://www.nature.com/articles/s41550-022-01838-1.
DOI: 10.6084/m9.figshare.24456844.v1
title: Will They or Won't They Couples Data

description: Many television shows follow the “will they or won’t they” trope, where the dynamic between a pair of main characters constantly shifts between friendship and something more throughout the run of the series. This trope has persisted throughout the decades, and examples include Sam and Diane from the 1980s show Cheers and Jess and Nick from the 2010s show New Girl. In some cases, the audience may wait multiple seasons before a couple like this gets together, and some suspect that producers delay the moment to create suspense and keep viewers engaged. Events marking major romantic milestones, such as the pair’s first kiss, often change the trajectory of the plot, influence the number of viewers tuning into the show, and drive up episode ratings. In this project, we scrape viewer ratings from the Internet Movie Database (IMDb) for 150 popular couples from 125 television series and then model the plot shifts following episodes with romantic milestones using causal inference methods. Specifically, we construct an interrupted time series model, where the interruption is the episode in which each couple has their first kiss. From this model, we assess whether these interruptions are associated with changes in viewer ratings on average.
DOI: 10.6084/m9.figshare.29032859.v1
title: Phase 2 :Diet exploration (Data base)

description: Database with detailed descriptions of food preparations, including ingredients, sources of ingredients, weights of some raw ingredients when possible, utensils used, and descriptions of consumption among four Shawi families participating in Phase 2 of the study (February to June 2021).
DOI: 10.17632/cvphcg2hzg
title: Data for: AFFIRMATIVE ACTION IN BRAZILIAN UNIVERSITIES: EFFECTS ON THE ENROLLMENT OF TARGETED GROUPS

description: Data and scripts used in the revised version of AFFIRMATIVE ACTION IN BRAZILIAN UNIVERSITIES: EFFECTS ON THE ENROLLMENT OF TARGETED GROUPS by Renato Vieira and Mary Arends-Kuenning
DOI: 10.17632/x85pp55kdt
title: Türk Folklor Araştırmaları Dergisi/Journal of Turkish Folklore Research

description: Turkish Folklore Research Journal (TFA) was founded by İhsan Hınçer in 1949 and closed with the 366th issue dated January 1980; in May 2023, the founder's heir, Mr. Bora Hınçer, transferred the re-publication rights of the journal in writing to Prof. Dr. Metin Karadağ on behalf of the Folklore Research Society Society in TRNC. The journal publishes four issues a year online. DOI-tagged articles in the open-access journal are published free of charge in a double-blind review system. The Journal of Turkish Folklore Research is an open-access, multidisciplinary journal dedicated to publishing high-quality research in the fields of folklore, anthropology, literature, and other related areas in the social sciences. The articles published by the journal aim to represent significant developments for experts in each field.

We are committed to providing an efficient service for both authors and readers. Our team of independent editors makes fast and fair publication decisions. The rapid dissemination of accepted articles to a broad readership and relevant communities is facilitated through a continuous online publishing schedule.
DOI: 10.17632/cycs5p42s6
title: Data for: Post K-Pg diversification of the mammalian order Eulipotyphla as suggested by phylogenomic analyses of ultra-conserved elements
DOI: 10.17632/s3m5srcffc
title: Data for: From magma replenishment to epithermal mineralization: Combined evidence from zircon U-Pb, (U-Th)/He and trace element data

description: here are the tables used in our paper
DOI: 10.6084/m9.figshare.11391210.v1
title: Case management as a high-risk prenatal care strategy

description: ABSTRACT Objective: to discuss the benefits of using high-risk prenatal case management. Method: a qualitative, convergent care study with six high-risk pregnant women, performed in a municipality in the south of Brazil. Data were produced by case management from April to August of 2017 through observation-participant. Analysis followed the processes of Convergent Care Research: apprehension, synthesis, theorization and transfer. Results: case management identified important elements in the care of pregnant women, which denoted a greater complexity to the cases; was shown as a relevant space for nurses to act, because it is an intervention that requires knowledge and specific skills. Final considerations: case management provides differentiated management in complex cases, facilitates the flow between health services, concretizing the comprehensiveness and equity of the care. It was found, in the convergence between research and care, that participants were benefited by case management.
DOI: 10.6084/m9.figshare.12801215.v3
title: A Software Maintainability Dataset

description: This dataset contains 304 manual evaluations of class-level software maintainability. It can be used to develop and evaluate automated quality prediction tools.<br>This archive was created along the work described in detail in<em>M. Schnappinger, A. Fietzke, and A. Pretschner, "</em><i>Defining a Software Maintainability Dataset: Collecting, Aggregating and Analysing Expert Evaluations of Software Maintainability</i><em>", International Conference on Software Maintenance and Evolution (ICSME), 2020</em><em><br></em>If you use this dataset in your research, please cite both this dataset and the corresponding paper. This archive containsA readme with all relevant information aboutStudy objectsLabel definitionThreats to validityHints for using the datasetList of metrics used to prioritize the samplesThe code of the study objectsA .csv file containing the readability, understandability, complexity, adequate size, and overall maintainability labelsThe original publicationFigshare uses a strict character limit for this description. Please refer to the `Readme.md` for further information.<br>
DOI: 10.6084/m9.figshare.23703174.v2
title: Analysis of the Eco-efficiency of Agriculture in Brazilian Municipalities: Based on the Stochastic-DEA Model

description: The analysis is based on data provided by the senso agropecuário (2017) - IBGE. In order to measure the eco-efficiency of the 5563 Brazilian municipalities. The variables involved in the analysis are:
<br>
𝑥1- Area of establishments (hectares), 
𝑥2-Annual expenditure with fuels and lubricants (Thousand Reais), 
𝑥3- Annual expenditure with inputs for plant and animal production (Thousand Reais), 
𝑥4- Labor employed in the establishments (salaried and family) 
𝑥5- Other expenses (Thousand Reais).
𝑦1- Annual gross revenue (Thousand reais)
𝑦2- Area of natural and planted woods and forests in the establishments (hectares) 
𝑦3- Annual agricultural sector greenhouse gas emissions (tons
GWP).
𝑦4- Diversity index of Shannon-Weaver, an undesirable output variable.
DOI: 10.6084/m9.figshare.25954993.v1
title: <b>Monitoring Methane Concentrations with High Spatial Resolution over China by using Random Forest Model</b>

description: 基于TROPOMI卫星观测到的xch4数据，利用机器学习模型重建了数据的高覆盖率，提高了数据的空间覆盖率。
DOI: 10.6084/m9.figshare.7152596.v1
title: Robust areas of high and low modeled human impact on the global oceans

description: Raster data sets describing robust areas of high and low modeled human impact on the global oceans, as shown in Fig. 1 (a and b) of: <br>Stock et al. (2018), Uncertainty analysis and robust areas of high and low modeled human impact on the global oceans. Conservation Biology (see link below).<br>The data consist of eight rasters: The percent of Monte Carlo simulation runs in which each grid cell was in the most impacted 25%, the least impacted 25%, the most impacted 10% and the least impacted 10% of the oceans. For each raster, there is a version with climate change stressors included in the simulations, and one with climate change excluded (indicated by "no_cc" in the filename).<br>To reproduce the robust areas from Fig. 1 in the paper, set the simulation runs thresholds to &gt;=75% and &gt;=90% accordingly.<br>Please cite the paper (link below) if you use these data.<br>
DOI: 10.6084/m9.figshare.9702851.v1
title: Data and do-files from "Anatomy of a demand shock: Quantitative analysis of crowding in hospital emergency departments in Victoria, Australia during the 2009 influenza pandemic"

description: These files are the Stata do file and two datasets needed to replicate the graphs and regression results in the paper "Anatomy of a demand shock: Quantitative analysis of crowding in hospital emergency departments in Victoria, Australia during the 2009 influenza pandemic"
DOI: 10.17632/kdw549kj22
title: Digital research literacy of graduate students at H University in China

description: This document contains survey data including the digital research literacy scale and the questionnaire.
DOI: 10.6084/m9.figshare.12739559.v1
title: caravanheim

description: This is a dataset regarding a preliminary design exploration for a self-buildable movable guest-house. The thermal models, the metamodelling files and the exploration results are included.
DOI: 10.6084/m9.figshare.21393168.v1
title: Supplementary Material for: Jamaican Susumber Berry Poisoning Mimicking Acute Stroke

description: <b><i>Background:</i></b> Stroke mimics are non-vascular conditions that present with acute focal neurological deficits, simulating an acute ischemic stroke. Susumber berry (SB) toxicity is a rare cause of stroke mimic with limited case reports available in the literature. <b><i>Objectives:</i></b> We report four new cases of SB toxicity presenting as stroke mimic, and we performed a systematic review. <b><i>Methods:</i></b> MEDLINE/EMBASE/WoS were searched for “susumber berries,” “susumber,” or “solanum torvum.” <b><i>Results:</i></b> 531 abstracts were screened after removal of duplicates; 5 articles and 2 conference abstracts were selected describing 13 patients. A total of 17 patients who ingested SB and became ill were identified, including our 4 patients. All but one presented with acute neurologic manifestation; 16 (94%) presented with dysarthria, 16 (94%) with unstable gait, 8 (47%) with nystagmus/gaze deviation, 10 (59%) with blurry vision, and 5 (29%) with autonomic symptoms. Six (35%) required ICU admission, and 3 (18%) were intubated. Fourteen (82%) had a rapid complete recovery, and 3 were hospitalized up to 1 month. <b><i>Conclusions:</i></b> SB toxicity can cause neurological symptoms that mimic an acute stroke typically with a posterior circulation symptom complex. Altered SB toxins (from post-harvest stressors or temperature changes) might stimulate muscarinic/nicotinic cholinergic receptors or inhibit acetylcholinesterase, causing gastrointestinal, neurological, and autonomic symptoms. In cases of multiple patients presenting simultaneously to the ED with stroke-like symptoms or when stroke-like symptoms fail to localize, a toxicological etiology (such as SB toxicity) should be considered.