cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.1415334
title: Replication Kit: "Are Unit and Integration Test Definitions Still Valid for Modern Java Projects? An Empirical Study on Open-Source Projects"

description: <strong>Replication Kit for the Paper "Are Unit and Integration Test Definitions Still Valid for Modern Java Projects? An Empirical Study on Open-Source Projects"</strong><br>
This additional material shall provide other researchers with the ability to replicate our results. Furthermore, we want to facilitate further insights that might be generated based on our data sets.

<strong>Structure</strong><br>
The structure of the replication kit is as follows:


	<strong>additional_visualizations</strong>: contains additional visualizations (Venn-Diagrams) for each projects for each of the data sets that we used
	<strong>data_analysis</strong>: contains two python scripts that we used to analyze our raw data (one for each research question)
	<strong>data_collection_tools</strong>: contains all source code used for the data collection, including the used versions of the COMFORT framework, the BugFixClassifier, and the used tools of the SmartSHARK environment;
	<strong>mongodb_no_authors</strong>: Archived dump of our MongoDB that we created by executing our data collection tools. The "comfort" database can be restored via the mongorestore command.


<br>
<strong>Additional Visualizations</strong><br>
We provide two additional visualizations for each project:<br>
1) &lt;project_name&gt;\_disj\_ieee\_venn (visualizations for the DISJ data set)<br>
2) &lt;project_name&gt;\_all\_ieee\_venn (visualizations for the ALL data set)

For each of these data sets there exist one visualization for each project that shows four Venn-Diagrams for each of the different defect types. These Venn-Diagrams show the number of defects that were detected by either unit, or integration tests (or both).

Furthermore, we added boxplots for each of the data sets (i.e., ALL and DISJ) showing the scores of unit and integration tests for each defect type.

<br>
<strong>Analysis scripts</strong><br>
Requirements:<br>
- python3.5<br>
- tabulate<br>
- scipy<br>
- seaborn<br>
- mongoengine<br>
- pycoshark<br>
- pandas<br>
- matplotlib

Both python files contain all code for the statistical analysis we performed.

<strong>Data Collection Tools</strong><br>
We provide all data collection tools that we have implemented and used throughout our paper. Overall it contains six different projects and one python script:


	<strong>BugFixClassifier</strong>: Used to classify our defects.
	<strong>comfort-core</strong>: Core of the comfort framework. Used to classify our tests into unit and integration tests and calculate different metrics for  these tests.
	<strong>comfort-jacoco-listner</strong>: Used to intercept the coverage collection process as we were executing the tests of our case study projects.
	<strong>issueSHARK</strong>: Used to collect data from the ITSs of the projects.
	<strong>pycoSHARK</strong>: Library that contains models for the used ORM mapper that is used insight the SmartSHARK environment.
	<strong>vcsSHARK</strong>: Used to collect data from the VCSs of the projects.
DOI: 10.5880/sfb806.44
title: Supplementary data for "Distribution modeling of paleofauna in the Western Mediterranean between the Heinrich events H5 and H4" (master's thesis)

description: This dataset is related to the master's thesis "Distribution modeling of paleofauna in the Western Mediterranean between the Heinrich events H5 and H4". The aim of the work was to generate a model for species distribution in the Western Mediterranean and to determine the best method in this context.
By applying three different methods (Bioclim, GLM, MaxEnt) from the dismo package, R was used to predict the distribution of eight cold-adapted prey species in the Late Pleistocene. The Geographic Information System (GIS) QGIS was used to produce the maps which are discussed in the master's thesis and presented there in extracts. The complete dataset is stored within this entry.

The supplementary data (supp_dat.zip) contains the result maps of all species and all time slices as image file, the source code in R, and the raw value results as GeoTIFF.
Additional data (add_dat.zip) contains all output files generated through the modeling process. 

References
Hijmans, R. J., Elith, J., 2017. Species distribution modeling with R. https://cran.r-project.org/web/packages/dismo/vignettes/sdm.pdf, 2018-9-12.

QGIS Development Team, 2018. QGIS Geographic Information System (QGIS) Software, Version 3.2. Op en Source Geospatial Foundation. http://qgis.osgeo.org, 2018-9-12

R Core Team, 2018. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing. https://www.R- project.org, 2018-9-12.
DOI: 10.25625/bwybnk/5mngie
title: IQWiG-metadata.csv
DOI: 10.25625/bwybnk/l7owkn
title: IQWiG-data.csv
DOI: 10.25810/5dxz-xm93.5
title: Latin American Newspaper Coverage of Climate Change or Global Warming, 2004-2018 - August 2018

description: The Media and Climate Change Observatory Data monitors 74 sources (across newspapers, radio and TV) in 38 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://sciencepolicy.colorado.edu/icecaps/research/media_coverage/index.html. These data include Excel (.xlsx), CSV (.csv), and plain-text README files (.txt).
DOI: 10.25810/6qjv-1296.5
title: Indian Newspaper Coverage of Climate Change or Global Warming, 2004-2018 - August 2018

description: The Media and Climate Change Observatory Data monitors 74 sources (across newspapers, radio and TV) in 38 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://sciencepolicy.colorado.edu/icecaps/research/media_coverage/index.html. These data include Excel (.xlsx), CSV (.csv), and plain-text README files (.txt).
DOI: 10.25810/jgyv-zg57.5
title: New Zealand Newspaper Coverage of Climate Change or Global Warming, 2004-2018 - August 2018

description: The Media and Climate Change Observatory Data monitors 74 sources (across newspapers, radio and TV) in 38 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://sciencepolicy.colorado.edu/icecaps/research/media_coverage/index.html. These data include Excel (.xlsx), CSV (.csv), and plain-text README files (.txt).
DOI: 10.5281/zenodo.1413734
title: Fedora And Debian Software Package Dependency Networks Along With Description Text Associated With Nodes

description: Fedora (version 28) and Debian (version 9.5) software package dependency networks along with description text associated with nodes.
description: {"references": ["Shudan Zhong and Hong Xu. 2018. Learning Embeddings of Directed Networks with Text-Associated Nodes---with Application in Software Package Dependency Networks. arXiv:1809.02270."]}
DOI: 10.5281/zenodo.1413735
title: Dwd European Weather

description: opendata.dwd.de - OpenData by Deutscher Wetter Dienst

Conditions: https://www.dwd.de/EN/service/copyright/copyright_node.html

dates and times are UTC.
DOI: 10.5281/zenodo.1419338
title: Dwd European Weather

description: opendata.dwd.de - OpenData by Deutscher Wetter Dienst

Conditions: https://www.dwd.de/EN/service/copyright/copyright_node.html

dates and times are UTC.
DOI: 10.17632/vng8wg9n65.1
title: Android permissions and API calls during dynamic analysis

description: This data set contain 50,000 android apps and 10,000 malware apps collected from different sources and same name apps download from third party app store.
DOI: 10.25810/37f9-1j65.5
title: Spanish Newspaper Coverage of Climate Change or Global Warming, 2004-2018 - August 2018

description: The Media and Climate Change Observatory Data monitors 74 sources (across newspapers, radio and TV) in 38 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://sciencepolicy.colorado.edu/icecaps/research/media_coverage/index.html. These data include Excel (.xlsx), CSV (.csv), and plain-text README files (.txt).
DOI: 10.25810/8196-e820.5
title: United Kingdom Newspaper Coverage of Climate Change or Global Warming, 2004-2018 - August 2018

description: The Media and Climate Change Observatory Data monitors 74 sources (across newspapers, radio and TV) in 38 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://sciencepolicy.colorado.edu/icecaps/research/media_coverage/index.html. These data include Excel (.xlsx), CSV (.csv), and plain-text README files (.txt).
DOI: 10.5281/zenodo.1413736
title: Fedora And Debian Software Package Dependency Networks Along With Description Text Associated With Nodes

description: Fedora (version 28) and Debian (version 9.5) software package dependency networks along with description text associated with nodes.
description: {"references": ["Shudan Zhong and Hong Xu. 2018. Learning Embeddings of Directed Networks with Text-Associated Nodes---with Application in Software Package Dependency Networks. arXiv:1809.02270."]}
DOI: 10.17632/5226rtjtwc.3
title: A Mathematical Model for Optimizing Port Terminals with Several Types of Machines (Tests and Codes)

description: Tests, Results and Codes of the paper "A Mathematical Model for Optimizing Port Terminals with Several Types of Machines"
DOI: 10.17632/cdpyd694d5.2
title: A Reverse Transcriptase-Cas1 Fusion Protein Contains a Cas6 Domain Required for Both CRISPR RNA Biogenesis and RNA Spacer Acquisition. Mohr et al.
DOI: 10.17632/fmpt4h773w.1
title: Sensorineural Hearing Loss in Children with Sickle Cell Disease

description: A comprehensive clinical database of 2600 pediatric SCD patients treated at 1 institution from 2010-16 was retrospectively reviewed to identify all patients who were referred for audiologic testing. Audiologic test results, patient characteristics, and SCD treatments were reviewed.
DOI: 10.25810/jck1-hf50.5
title: United States Newspaper Coverage of Climate Change or Global Warming, 2004-2018 - August 2018

description: The Media and Climate Change Observatory Data monitors 74 sources (across newspapers, radio and TV) in 38 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://sciencepolicy.colorado.edu/icecaps/research/media_coverage/index.html. These data include Excel (.xlsx), CSV (.csv), and plain-text README files (.txt).
DOI: 10.25810/k55w-7a04.5
title: World Radio Coverage of Climate Change or Global Warming, 2004-2018 - August 2018

description: The Media and Climate Change Observatory Data monitors 74 sources (across newspapers, radio and TV) in 38 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://sciencepolicy.colorado.edu/icecaps/research/media_coverage/index.html. These data include Excel (.xlsx), CSV (.csv), and plain-text README files (.txt).
DOI: 10.5281/zenodo.1414569
title: Comparison Of Software Engineering Experiment Quality Evaluation Approaches - Experimental Package

description: Experimental Package of the Comparison of Experiment Quality Evaluation Approaches
DOI: 10.17632/dkcrjytvnd.1
title: Data for: Understanding the structural, dynamic and thermodynamic properties of 5-Nonylsalicylaldoxime: molecular dynamics and experimental studies

description: Supplementary material note Optimized molecular structure of 5-Nonylsalicylaldoxime at 298.15 K (Hydrogen: green, Carbon: cyan, Oxygen: red and Nitrogen: blue) (Fig. S1), A complete list of the force field parameters used in this work (Tables S1 to S5), The change of root mean square displacement, kinetic energy, temperature, pressure, potential energy and total energy for 4 ns NpT simulation at 298.15 K (Fig. S. 2), log(MSD(t)) versus log(t), and β(t) versus time for 512 molecules of NSAO at 308.15 and 318.15 K (Figs. S. 3 and S. 4).
DOI: 10.17632/y95gnygpgw.1
title: The effects of a stressed inshore urban reef on coral recruitment in Suva harbour, Fiji -Data

description: A relic inshore reef ecosystem adjacent to the Fijian capital of Suva and another remote inshore reef were monitored monthly from July 2014 to July 2015 for coral recruitment, sedimentation rates, coral cover, temperature and light intensity. Despite a major sewage spill in Suva Harbour in December 2014, the municipal inshore site, exposed to constant anthropogenic activity, recorded no significant differences in coral spat abundance (except for the family Poritidae) on artificial substrata compared to the remote inshore site. Total yearly spat abundance was 106 on municipal reef and 132 on remote reef, while average daily sediment trap collection rates (g.cm2.day-1) were significantly higher in the municipal site for the entire duration of monitoring. Total annual Particulate Organic Matter content in sediment was also significantly higher in the municipal site (107.51 g.cm ), compared to the remote site (43.37 g.cm ). Mean light intensity was significantly lower for the municipal site (69.81 lum/ft ) compared to the remote site (239.26 lum/ft ), with Photosynthetically Active Radiation also lower for the former (800-1066.66 µmol m s ) compared to the latter (3266.66-3600 µmol m s ). The lack of significant differences in coral spat recruitment rates suggests that settling larvae may be unable to distinguish between sub-optimal and optimal sites probably as a consequence of interference with coral settlement cues arising from anthropogenic development.
DOI: 10.25810/c862-0e81.5
title: US Television Coverage of Climate Change or Global Warming, 2004-2018 - August 2018

description: The Media and Climate Change Observatory Data monitors 74 sources (across newspapers, radio and TV) in 38 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://sciencepolicy.colorado.edu/icecaps/research/media_coverage/index.html. These data include Excel (.xlsx), CSV (.csv), and plain-text README files (.txt).
DOI: 10.26279/5b98601d6b27e
title: Land cover mapping of Victoria, 2017

description: Land cover mapping data is an annual component of the Victorian Land Use Information System (VLUIS). The land cover information has been created specifically for VLUIS using time series analysis of the MOD13Q1 or MYD13Q1 products produced by NASA using data collected by the MODIS sensor and freely available on the Reverb | ECHO website. Ground data is collected annually across Victoria using a stratified random sampling approach for calibration of classification rule sets based on annual seasonal curves derived from MODIS imagery, and validation of the classification output. The ground data is split into three groups with 50% used to develop classification rules, 25% used to produce interim validation results that feed back into the rule development process with the remaining 25% used to independently validate the final classification. Error matrices for each land cover dataset from 2009-2017 have been produced from this final validation. The TIMESAT program is used to calculate annual seasonal parameters from smoothed annual time series for the Normalised Difference Vegetation Index (NDVI), Enhanced Vegetation Index (EVI) and the Red and Near Infrared (NIR) MOD13Q1 or MYD13Q1 bands. A time series of 23 images is used to calculate 11 seasonal parameters that numerically describe features of the annual seasonal curves for each band. In addition, the standard deviation of the annual seasonal curve is calculated for each band. Each year, ground data and the seasonal parameters are used to generate a rule-based classification, using the See5 data mining program. Additional input data, such as hydrological features and public land management (available from data.vic.gov.au) and inter-annual smoothing of the classification are used to minimise misclassification. The dominant land cover classification includes the following classes: Water, Native Woody Cover, Deciduous Woody Horticulture, Evergreen Woody Horticulture, Hardwood Plantation, Softwood Plantation, Pasture and grassland, Brassicas, Cereals, Legumes, Non-woody Horticulture, and Bare and non-photosynthetic material. The methodology for creating the Land Cover datasets is fully described in Sheffield, K et al. (2015): Mapping dominant annual land cover from 2009 to 2013 across Victoria, Australia using satellite imagery. Scientific Data, 2, 150069, doi:10.1038/sdata.2015.69 Additional information on land cover mapping, including map symbology, can be found on Victorian Resources Online.
DOI: 10.5281/zenodo.1418887
title: Dataset for Enhort: A Platform for Deep Analysis of Genomic Positions

description: Tar-archive includes the following data:


	Sqlite3-database needed for Enhort
	All bed-Files referenced by database


These files are only needed when you want to host your own Enhort-Server. If you only want to use the software, please visit https://enhort.mni.thm.de.
DOI: 10.5281/zenodo.1418888
title: Dataset for Enhort: A Platform for Deep Analysis of Genomic Positions

description: Tar-archive includes the following data:


	Sqlite3-database needed for Enhort
	All bed-Files referenced by database


These files are only needed when you want to host your own Enhort-Server. If you only want to use the software, please visit https://enhort.mni.thm.de.
DOI: 10.17632/hwz9bnc34d.1
title: Linguistic Steganography

description: Total of 120 images. Half of the dataset are stego-images while the other half are normal images. The images were converted from JPEG to 256 Color Bitmap Images. The steganography type are open codes with Grille Cipher
DOI: 10.17632/vmd5d8yy98.1
title: Tonal Optimization of Bells Utilizing Sensitivity Analysis Supplementary Data

description: This data is supplementary data for a journal submission to JSV. The data-set includes: Strand7 Models of major third and minor third bells. Strand7 Log files for a Natural frequency analysis of the aforementioned bell files. An excel spreadsheet of natural frequency results. An image of the 3D additive manufactured Bell, a sound clip of it being struck, and its frequency spectrum analysis.
DOI: 10.17632/z5ksd7rxsx.1
title: Data for: Climate, Forest Growing Season, and Evapotranspiration Changes in the central Appalachian Mountains, USA

description: The dataset includes 18 climate, hydrology, and growing season variables obtained from the historical MACA dataset, USGS waterdata, and AVHRR from 1982-2012 for 31 watersheds in the central Appalachian region of the United States. The top row name corresponds closely to table 1 in the manuscript. The column site name corresponds to the USGS waterdata site number. The year refers to each year (1982-2012) for the corresponding rows of the data.
DOI: 10.5258/soton/d0646
title: Research Data - Multi-Class Coded Layered Asymmetrically Clipped Optical OFDM

description: This is the dataset of the paper:  X. Zhang, Z. Babar, R. Zhang, S. Chen and L. Hanzo, "Multi-Class Coded Layered Asymmetrically Clipped Optical OFDM".This dataset contains the data used for producing Figures 9, 10, 11(b) and 12 of the paper "Multi-Class Coded Layered Asymmetrically Clipped Optical OFDM". Each folder is named according to the figure's number and the dataset - of each figure - is stored in one more .dat file in that folder.
DOI: 10.5258/soton/d0059
title: Dataset for photonic crystal and quasi-crystals providing simultaneous light coupling and beam splitting within a low refractive-index slab waveguide

description: Dataset supports:
Shi, J. et al (2017). Photonic crystal and quasi-crystals providing simultaneous light coupling and beam splitting within a low refractive-index slab waveguide. Scientific Reports, 7(1), [1812].Coupling between free space components and slab waveguides is a common requirement for integrated optical devices, and is typically achieved by end-fire or grating coupling. Power splitting and distribution requires additional components. Usually grating couplers are used in combination with MMI/Y-splitters to do this task. In this paper, we present a photonic crystal device which performs both tasks simultaneously and is able to couple light at normal incidence and near normal incidence. Our approach is scalable to large channel counts with little impact on device footprint. We demonstrate in normal incidence coupling with multi-channel splitting for 785 nm light. Photonic crystals are etched into single mode low refractive index SiON film on both SiO2/Si and borosilicate glass substrate. Triangular lattices are shown to provide coupling to 6 beams with equal included angle (60°), while a quasi-crystal lattice with 12-fold rotational symmetry yields coupling to 12 beams with equal included angle (30°). We show how to optimize the lattice constant to achieve efficient phase matching between incident and coupled mode wave vectors, and how to adjust operating wavelength from visible to infrared wavelengths.
DOI: 10.5258/soton/d0430
title: Mata

description: Mata is a system for medical image data management. It allows for a highly modular image management workflow supporting large file sizes. The name Mata derives from 'medicine' and 'data'.The work has been described in Wollatz, L., Scott, M., Johnston, S. J., Lackie, P. M. & Cox, S. J. (2018) 'Curation of Image Data for Medical Research', Proc. 14th Int. IEEE Conf. eScience
DOI: 10.5258/soton/d0511
title: Dataset for High-birefringence direct UV-written waveguides for use as heralded single-photon sources at telecommunication wavelengths

description: Characterisation data for the UV-written waveguide devices reported in "High-birefringence direct UV-written waveguides for use as heralded single-photon sources at telecommunication wavelengths," Optica (2018).
DOI: 10.5258/soton/d0650
title: Dataset for 'Solvent-free membrane extraction of volatile fatty acids from acidogenic fermernation'

description: This dataset supports the publication: Outram V and Zhang Y (2018) Solvent-Free Membrane Extraction of Volatile Fatty Acids from Acidogenci Fermentation in Bioresource Technology. Accepted on 11 September 2018.This dataset includes the data generated from the experiments listed in Table 1. 'Overview of experiments performed'. The calculation for Table 6. 'Economic analysis of membrane and extractant cost' is also provided.
DOI: 10.6073/pasta/bd0a961d45f9e381ee1645dbd27ac461
title: KIC01 Konza Prairie Terrestrial Arthropods Species List

description: Konza Prairie Terrestrial Arthropods Species List. This species list has been modified since 1977, last modified by Ellen Welti and Anthony Joern in 2014.
DOI: 10.5525/gla.researchdata.634
title: Intermolecular Interactions in Molecular Crystals and Their Effect on Thermally Activated Delayed Fluorescence of Helicene-Based Emitters
DOI: 10.5281/zenodo.1217787
title: Direct Observation Of Electron Density Reconstruction At The Metal-Insulator Transition In Naoso3

description: Open access data set for manuscript "Direct observation of electron density reconstruction at the metal- insulator transition in NaOsO3" published in Physical Review B, 98, 115116 (2018)
description: Open access text available at https://arxiv.org/abs/1803.08271
description: {"references": ["N. Gurung et al. https://arxiv.org/abs/1803.08271"]}