DOI: 10.5281/zenodo.1063898
title: Data Set For "Reward-Based Learning Drives Rapid Sensory Signals In Medial Prefrontal Cortex And Dorsal Hippocampus Necessary For Goal-Directed Behavior"

description: Data set for: Le Merre P, Esmaeili V, Charrière E, Galan K, Salin P-A, Petersen CCH, Crochet S (2018) Reward-based learning drives rapid sensory signals in medial prefrontal cortex and dorsal hippocampus necessary for goal-directed behavior. Neuron, https://doi.org/10.1016/j.neuron.2017.11.031

There are 44 files in this data upload:<br>
1.    '2018_LeMerre_Neuron.pdf' - this is a pdf version of the online publication.<br>
2.    'Chronic_LFP_data.mat' - this is a Matlab data structure, which contains all the chronic LFP data for the publication.<br>
3.    'Silicon_Probe_data.mat' - this is a Matlab data structure, which contains all the mPFC silicon probe recording data for the publication.<br>
4.    'Opto_Inactivation_data.mat' - this is a Matlab data structure, which contains all the optogenetic inactivation data for the publication.<br>
5.    'Mus_Inactivation_data.mat' - this is a Matlab data structure, which contains all the pharmacological (Muscimol) inactivation data for the publication.<br>
6.    'Learning_Days_Mtrx.mat' - this is a Matlab data file, which contains the selected training days analyzed for the Trained condition in the Detection Task.<br>
7.    'Exposed_Days_Mtrx.mat' - this is a Matlab data file, which contains the selected days analyzed for the Exposed condition in the Neutral Exposure.<br>
8.    'p_value_colormap.mat' - this is a Matlab data file, which contains the color map used to display the p value in the Matlab codes 'plot_fig2A_SEP_D1_vs_Trained.m'; 'plot_fig2B_Amplitude_D1_vs_Trained.m'; 'plot_fig3A_SEP_D1_vs_Exposed.m'; 'plot_fig4A_SEP_H_vs_M.m’.<br>
9.    'p_value_colormap2.mat' - this is a Matlab data file, which contains the color map used to display the p value in the Matlab code 'plot_figS3B_Stim_vs_Catch_for_significantly_inc_dec_units.m’; ’plot_figS4A_H_vs_M_for_inc_dec_units_and_zscored_PSTH.m’.<br>
10.    'scatterplot_colormap.mat' - this is a Matlab data file, which contains the color map used to display the p value in the Matlab code 'plot_fig2C_Scatterplot_Amplitude_vs_dprime.m'.<br>
11.    'SEP_colormtrx.mat' - this is a Matlab data file, which contains the color map used to display the p value in the Matlab code 'plot_fig1B_Sensory_Evoked_Potentials.m'; 'plot_figS3A_SEP_EMG_amplitude_ReactionTime.m'.<br>
12.    'zscore_colormap.mat' - this is a Matlab data file, which contains the color map used to display the p value in the Matlab code 'plot_fig3D_mPFC_PSTH_and_zscore_DT_vs_NE.m'; 'plot_figS4A_H_vs_M_for_inc_dec_units_and_zscored_PSTH.m’.<br>
13.    'Chronic_LFP_dataViewer.fig' - this is a Matlab Figure file, which is the GUI layout for 'Chronic_LFP_dataViewer.m'.<br>
14.    'Chronic_LFP_dataViewer.m' - this is a Matlab code, which displays the data contained in 'Chronic_LFP_data.mat'.<br>
15.    'Silicon_Probe_dataViewer.fig' - this is a Matlab Figure file, which is the GUI layout for 'Silicon_Probe_dataViewer.m'.<br>
16.    'Silicon_Probe_dataViewer.m' - this is a Matlab code, which displays the data contained in 'Silicon_Probe_data.mat'.<br>
17.    'plot_fig1B_Sensory_Evoked_Potentials.m' - this is a Matlab code, which analyses the data in 'Chronic_LFP_data.mat', and displays the results published in figure 1, panel B (Le Merre et al., 2018).<br>
18.    'plot_fig1C_Silicon_Probe_Hit_trials.m' - this is a Matlab code, which analyses the data in 'Silicon_Probe_data.mat', and displays the results in the same way as the published figure 1, panel C (Le Merre et al., 2018).<br>
19.    'plot_fig2A_SEP_D1_vs_Trained.m' - this is a Matlab code, which analyses the data in 'Chronic_LFP_data.mat', and displays the results in the same way as the published figure 2, panel A (Le Merre et al., 2018).<br>
20.    'plot_fig2B_Amplitude_D1_vs_Trained.m' - this is a Matlab code, which analyses the data in 'Chronic_LFP_data.mat', and displays the results in the same way as the published figure 2, panel B (Le Merre et al., 2018).<br>
21.    'plot_fig2C_Scatterplot_Amplitude_vs_dprime.m' - this is a Matlab code, which analyses the data in 'Chronic_LFP_data.mat', and displays the results in the same way as the published figure 2, panel C (Le Merre et al., 2018).<br>
22.    'plot_fig3A_SEP_D1_vs_Exposed.m' - this is a Matlab code, which analyses the data in 'Chronic_LFP_data.mat', and displays the results in the same way as the published figure 3, panel A (Le Merre et al., 2018).<br>
23.    'plot_fig3B_Amplitude_D1_vs_Exposed.m' - this is a Matlab code, which analyses the data in 'Chronic_LFP_data.mat', and displays the results in the same way as the published figure 3, panel B (Le Merre et al., 2018).<br>
24.    'plot_fig3C_ROC_Trained_vs_Exposed.m' - this is a Matlab code, which analyses the data in 'Chronic_LFP_data.mat', and displays the ROCs in the same way as the published figure 3, panel C (Le Merre et al., 2018).<br>
25.    'plot_fig3C_ROC_Randomization.m' - this is a Matlab code, which analyses the data in 'Chronic_LFP_data.mat', and displays the label shuffled ROCs in the same way as the published figure 3, panel C (Le Merre et al., 2018).<br>
26.    'plot_fig3D_mPFC_PSTH_and_zscore_DT_vs_NE.m' - this is a Matlab code, which analyses the data in 'Silicon_Probe_data.mat', and displays the results in the same way as the published figure 3, panel D (Le Merre et al., 2018).<br>
27.    'plot_fig4A_SEP_H_vs_M.m' - this is a Matlab code, which analyses the data in 'Chronic_LFP_data.mat', and displays the results in the same way as the published figure 4, panel A (Le Merre et al., 2018).<br>
28.    'plot_fig4B_Amplitude_ H_vs_M.m' - this is a Matlab code, which analyses the data in 'Chronic_LFP_data.mat', and displays the results in the same way as the published figure 4, panel B (Le Merre et al., 2018).<br>
29.    'plot_fig4C_mPFC_PSTH_Hit_vs_Miss.m' - this is a Matlab code, which analyses the data in 'Silicon_Probe_data.mat', and displays the results in the same way as the published figure 4, panel C, left panel (Le Merre et al., 2018).<br>
30.    'plot_fig4C_Scatterplot_modulation_Hit_vs_Miss.m' - this is a Matlab code, which analyses the data in 'Silicon_Probe_data.mat', and displays the results in the same way as the published figure 4, panel C, right panel (Le Merre et al., 2018).<br>
31.    'plot_fig4D_Photoinhibitions.m' - this is a Matlab code, which analyses the data in 'Opto_Inactivation_data.mat', and displays the results published in figure 4, panel D (Le Merre et al., 2018).<br>
32.    'plot_figS2D_Performance_DetectionTask_NeutralExposition.m' - this is a Matlab code, which analyses the data in 'Chronic_LFP_data.mat', and displays the results in the same way as the published figure S2, panel D (Le Merre et al., 2018).<br>
33.    'plot_figS3A_SEP_EMG_amplitude_ReactionTime.m' - this is a Matlab code, which analyses the data in 'Chronic_LFP_data.mat', and displays the results in the same way as the published figure S3, panel A (Le Merre et al., 2018).<br>
34.    'plot_figS3B_Stim_vs_Catch_for_significantly_inc_dec_units.m' - this is a Matlab code, which analyses the data in 'Silicon_Probe_data.mat', and displays the results in the same way as the published figure S3, panel B (Le Merre et al., 2018).<br>
35.    'plot_figS4A_H_vs_M_for_inc_dec_units_and_zscored_PSTH.m' - this is a Matlab code, which analyses the data in 'Silicon_Probe_data.mat', and displays the results in the same way as the published figure S4, panel A (Le Merre et al., 2018).<br>
36.    'plot_figS4B_Pharmacological_Inactivations.m' - this is a Matlab code, which analyses the data in 'Mus_Inactivation_data.mat', and displays the results published in figure S4 (Le Merre et al., 2018).<br>
37.    'Load_LFP_Multisite_database.m' - this is a Matlab code, which is called in the Matlab codes that analyze the data in 'Chronic_LFP_data.mat'.<br>
38.    'Load_Silicon_Probe_database.m' - this is a Matlab code, which is called in the Matlab codes that analyze the data in 'Silicon_Probe_data.mat'.<br>
39.    'Load_Optogenetic_Inactivation_database.m' - this is a Matlab code, which is called in the Matlab code that analyzes the data in 'Opto_Inactivation_data.mat'.<br>
40.    'Load_Pharmacological_Inactivation_database.m' - this is a Matlab code, which is called in the Matlab code that analyzes the data in 'Mus_Inactivation_data.mat'.<br>
41.    'bonf_holm.m' - this is a Matlab code developed by D. M. Groppe, which is called in the Matlab code 'plot_figS4B_Pharmacological_Inactivations.m':<br>
https://ch.mathworks.com/matlabcentral/fileexchange/28303-bonferroni-holm-correction-for-multiple-comparisons<br>
42.    'boundedline.m' - this is a Matlab code developed by K. Kearney, which is called in the Matlab codes 'plot_fig1C_Silicon_Probe_Hit_trials.m'; 'plot_fig2A_SEP_D1_vs_Trained.m'; 'plot_fig3A_SEP_D1_vs_Exposed.m’; 'plot_fig3C_ROC_Trained_vs_Exposed.m'; 'plot_fig3D_mPFC_PSTH_and_zscore_DT_vs_NE.m'; 'plot_fig4A_SEP_H_vs_M.m'; 'plot_fig4C_mPFC_PSTH_Hit_vs_Miss.m'; 'plot_figS3B_Stim_vs_Catch_for_significantly_inc_dec_units.m'; 'plot_figS4A_H_vs_M_for_inc_dec_units_and_zscored_PSTH.m':<br>
https://ch.mathworks.com/matlabcentral/fileexchange/27485-boundedline-m<br>
43.    'inpaint_nans.m' - this is a Matlab code, which is called in the Matlab code 'boundedline.m'.<br>
44.    'PSTH_Simple.m' - this is a Matlab code developed by V. Esmaeili, which is called in the Matlab codes 'plot_fig1C_Silicon_Probe_Hit_trials.m'; 'plot_fig3D_mPFC_PSTH_and_zscore_DT_vs_NE.m'; 'plot_fig4C_mPFC_PSTH_Hit_vs_Miss.m'; 'plot_figS3B_Stim_vs_Catch_for_significantly_inc_dec_units.m'; 'plot_figS4A_H_vs_M_for_inc_dec_units_and_zscored_PSTH.m’.
description: {"references": ["Le Merre P, Esmaeili V, Charri\u00e8re E, Galan K, Salin P-A, Petersen CCH, Crochet S (2018) Reward-based learning drives rapid sensory signals in medial prefrontal cortex and dorsal hippocampus necessary for goal-directed behavior. Neuron, https://doi.org/10.1016/j.neuron.2017.11.031"]}