cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5598061
title: Protein biomarkers in renal transplantation

description: <b>Introduction</b>: The standard of care for monitoring renal transplant patients include transplant biopsy and serum creatinine measurements. These are invasive procedures and are late and nonspecific markers of injury. Proteomics and proteins can provide biomarkers for monitoring pathology and become a useful tool in detection and treatment of conditions that occur after transplant. <b>Areas covered</b>: A survey of 273 studies in the biomarker detection field which included proteomics relating to renal pathology and normal controls was done. Analysis of this data showed pathways and biomarkers specific to different pathologies such as: AR, CR, IRI, TI, VR, DGF, AABMR, ACMR, immunosuppressant toxicity, and infection. It also revealed biomarkers proposed for better detection of these pathologies and the strength (sensitivity and specificity) of such biomarkers. Finally, the field of proteomics in renal transplant in terms of its methodologies, current challenges in clinical translation, and possible solutions are also discussed. <b>Expert commentary</b>: An analysis of biomarkers of acute and chronic rejection revealed acute rejection may be a more inflammatory process. A comparison of proteomic and protein based (n = 183), transcriptomic (n = 1), and genomic (n = 4) studies revealed that proteomic and protein based approaches may offer a clearer picture of inflammation in acute rejection.
DOI: 10.17028/rd.lboro.5598079.v1
title: Using figshare to meet Loughborough University’s Research Data Management requirements

description: These are the slides of a presentation given at figshare Fest New Zealand on 27th October 2017 at Auckland University. One slide has been removed for copyright reasons from the original slide deck.
DOI: 10.6084/m9.figshare.5598061.v1
title: Protein biomarkers in renal transplantation

description: <b>Introduction</b>: The standard of care for monitoring renal transplant patients include transplant biopsy and serum creatinine measurements. These are invasive procedures and are late and nonspecific markers of injury. Proteomics and proteins can provide biomarkers for monitoring pathology and become a useful tool in detection and treatment of conditions that occur after transplant. <b>Areas covered</b>: A survey of 273 studies in the biomarker detection field which included proteomics relating to renal pathology and normal controls was done. Analysis of this data showed pathways and biomarkers specific to different pathologies such as: AR, CR, IRI, TI, VR, DGF, AABMR, ACMR, immunosuppressant toxicity, and infection. It also revealed biomarkers proposed for better detection of these pathologies and the strength (sensitivity and specificity) of such biomarkers. Finally, the field of proteomics in renal transplant in terms of its methodologies, current challenges in clinical translation, and possible solutions are also discussed. <b>Expert commentary</b>: An analysis of biomarkers of acute and chronic rejection revealed acute rejection may be a more inflammatory process. A comparison of proteomic and protein based (n = 183), transcriptomic (n = 1), and genomic (n = 4) studies revealed that proteomic and protein based approaches may offer a clearer picture of inflammation in acute rejection.
DOI: 10.6084/m9.figshare.5598031
title: Teststack.zip

description: Teststack for the SCIP tool
DOI: 10.6084/m9.figshare.5598031.v1
title: Teststack.zip

description: Teststack for the SCIP tool
DOI: 10.6084/m9.figshare.5598049.v2
title: ANCA negative RPGN - Case report of homeopathic treatment

description: Patient reports through the case progress during homeopathic treatment of ANCA negative RPGN. Dialysis frequency was reduced over time and stopped eventually.
DOI: 10.6084/m9.figshare.5597974
title: Cycling environments article database.xlsx

description: Database of articles reviewed for systematic literature review on urban cycling environments, classified across various categories. Results from Scopus search engine using following search query:<br>TITLE ( *cycl* OR bik* ) AND TITLE-ABS-KEY ( cycling OR bicycle OR bike AND ((built OR natural OR physical OR social OR perceptions OR experiences) AND environment) OR neighbourhood) AND ( LIMIT-TO ( SUBJAREA , "SOCI " ) ) AND ( LIMIT-TO ( DOCTYPE , "ar " ) OR LIMIT-TO ( DOCTYPE , " re " ) )
DOI: 10.6084/m9.figshare.5597932
title: Palaeoecological implications of the sympatric distribution of two species of <i>Machairodus</i> (Felidae, Machairodontinae, Homotherini) in the Late Miocene of Los Valles de Fuentidueña (Segovia, Spain)

description: In this paper, we study a sample of cranial, mandibular and dental remains of two species of the machairodontine felid genus <i>Machairodus</i> from the Early Vallesian (MN 9, around 10 Ma) site of Los Valles de Fuentidueña (Segovia, Spain): the tiger-sized <i>Machairodus aphanistus</i>, and the smaller and more primitive <i>M. alberdiae</i>; a species which is only known from this site. The fossils of these two sympatric populations are compared with the most abundant samples of <i>M. aphanistus</i> from the Late Vallesian (MN 10), younger sites of Batallones-1 and Batallones-3 (Torrejón de Velasco, Madrid, Spain). The results support the specific separation of <i>M. alberdiae</i> from <i>M. aphanistus</i> based on several differences in teeth size and proportions. Besides this, we observed differences among the analysed samples of <i>M. aphanistus</i>, indicating a differentiation between the older and more primitive form from Los Valles de Fuentidueña, and the younger and more derived one from the two Batallones sites. These differences fit well with the morphological evolution of this lineage towards the more derived Turolian <i>Amphimachairodus giganteus</i>. Finally, a relatively structured, patched habitat, combining the presence of open landscapes with shrubby and wooded areas, is inferred to explain the sympatric distribution of these two large machairodontines in Los Valles de Fuentidueña.
DOI: 10.6084/m9.figshare.5597971
title: Data from: Settlement and post-settlement survival rates of the white seabream (Diplodus sargus) in the western Mediterranean Sea

description: The file includes the raw data analyed in the paper Settlement and post-settlement survival rates of the white seabream (Diplodus sargus) in the western Mediterranean Sea published in PLOS ONE<br>
DOI: 10.6084/m9.figshare.5597974.v2
title: Cycling environments article database.xlsx

description: Database of articles reviewed for systematic literature review on urban cycling environments, classified across various categories. Results from Scopus search engine using following search query:<br>TITLE ( *cycl* OR bik* ) AND TITLE-ABS-KEY ( cycling OR bicycle OR bike AND ((built OR natural OR physical OR social OR perceptions OR experiences) AND environment) OR neighbourhood) AND ( LIMIT-TO ( SUBJAREA , "SOCI " ) ) AND ( LIMIT-TO ( DOCTYPE , "ar " ) OR LIMIT-TO ( DOCTYPE , " re " ) )
DOI: 10.6084/m9.figshare.5597884
title: Successful Aging at work

description: The current data set includes the assessment of the SOC-12 in a first sample of workers over 40, and in a second sample of workers over 45.
DOI: 10.6084/m9.figshare.5597932.v1
title: Palaeoecological implications of the sympatric distribution of two species of <i>Machairodus</i> (Felidae, Machairodontinae, Homotherini) in the Late Miocene of Los Valles de Fuentidueña (Segovia, Spain)

description: In this paper, we study a sample of cranial, mandibular and dental remains of two species of the machairodontine felid genus <i>Machairodus</i> from the Early Vallesian (MN 9, around 10 Ma) site of Los Valles de Fuentidueña (Segovia, Spain): the tiger-sized <i>Machairodus aphanistus</i>, and the smaller and more primitive <i>M. alberdiae</i>; a species which is only known from this site. The fossils of these two sympatric populations are compared with the most abundant samples of <i>M. aphanistus</i> from the Late Vallesian (MN 10), younger sites of Batallones-1 and Batallones-3 (Torrejón de Velasco, Madrid, Spain). The results support the specific separation of <i>M. alberdiae</i> from <i>M. aphanistus</i> based on several differences in teeth size and proportions. Besides this, we observed differences among the analysed samples of <i>M. aphanistus</i>, indicating a differentiation between the older and more primitive form from Los Valles de Fuentidueña, and the younger and more derived one from the two Batallones sites. These differences fit well with the morphological evolution of this lineage towards the more derived Turolian <i>Amphimachairodus giganteus</i>. Finally, a relatively structured, patched habitat, combining the presence of open landscapes with shrubby and wooded areas, is inferred to explain the sympatric distribution of these two large machairodontines in Los Valles de Fuentidueña.
DOI: 10.6084/m9.figshare.5597974.v1
title: Cycling environments article database.xlsx

description: Database of articles reviewed for systematic literature review on urban cycling environments, classified across various categories. Results from Scopus search engine using following search query:<br>TITLE ( *cycl* OR bik* ) AND TITLE-ABS-KEY ( cycling OR bicycle OR bike AND ((built OR natural OR physical OR social OR perceptions OR experiences) AND environment) OR neighbourhood) AND ( LIMIT-TO ( SUBJAREA , "SOCI " ) ) AND ( LIMIT-TO ( DOCTYPE , "ar " ) OR LIMIT-TO ( DOCTYPE , " re " ) )
DOI: 10.6084/m9.figshare.5597884.v1
title: Adjustment to aging

description: The current data set includes the assessment of the SOC-12 in a first sample of workers over 40, and in a second sample of workers over 45.
DOI: 10.6084/m9.figshare.5597884.v2
title: Adjustment to aging

description: The current data set includes the assessment of the SOC-12 in a first sample of workers over 40, and in a second sample of workers over 45.
DOI: 10.6084/m9.figshare.5596939
title: Zhao_et_al_Manuscript

description: Effects of urea formulations on behavior and functional traits of tadpoles<br>
DOI: 10.6084/m9.figshare.5596942
title: Public opinion on the Eurozone fiscal union: evidence from survey experiments in Italy

description: We investigate public attitudes toward the fiscal union: a policy advocated in official European Union documents and designed to address asynchronous economic fluctuations in the eurozone. We employ survey questions and conjoint analyses embedded in population-based panel surveys in Italy, and draw expectations from theories of tax-and-transfer schemes, public insurance, ideology, diffuse support, identity and trust. High-income right-wing individuals with weak European identity and negative assessment of EU membership are more likely to oppose the measure. However, high-income respondents display greater willingness to pay, especially in order to keep the euro, whereas lower-income participants are readier to ditch the currency if the monetary union does not deliver good economic performance. The political feasibility of this policy seems therefore to rest on the willingness to contribute by the core constituency supporting the euro. We also investigate the preferences for the institutional design of the policy.
DOI: 10.6084/m9.figshare.5596942.v1
title: Public opinion on the Eurozone fiscal union: evidence from survey experiments in Italy

description: We investigate public attitudes toward the fiscal union: a policy advocated in official European Union documents and designed to address asynchronous economic fluctuations in the eurozone. We employ survey questions and conjoint analyses embedded in population-based panel surveys in Italy, and draw expectations from theories of tax-and-transfer schemes, public insurance, ideology, diffuse support, identity and trust. High-income right-wing individuals with weak European identity and negative assessment of EU membership are more likely to oppose the measure. However, high-income respondents display greater willingness to pay, especially in order to keep the euro, whereas lower-income participants are readier to ditch the currency if the monetary union does not deliver good economic performance. The political feasibility of this policy seems therefore to rest on the willingness to contribute by the core constituency supporting the euro. We also investigate the preferences for the institutional design of the policy.
DOI: 10.6084/m9.figshare.5596921
title: Stroke Specific Quality of Life

description: Stroke Specific Quality of Life
DOI: 10.6084/m9.figshare.5596921.v1
title: Stroke Specific Quality of Life

description: Stroke Specific Quality of Life
DOI: 10.6084/m9.figshare.5596897
title: CT scan and full Stratigraphic Column

description: CT scan of Sacrum MWC 5627. Full stratigraphic column, which was too large to include in the manuscript.
DOI: 10.6084/m9.figshare.5596876
title: (year 2007)China's interregional input and output table - 6 departments and 8 regions.xls

description: This is an input and output table of 2007 for China's 6 regions and 8 departments.
DOI: 10.6084/m9.figshare.5596858
title: Supporting information S1

description: This supporting information provides the same tables as seen in the article "Ferrimagnetic iron sulfide formation and methane venting across the Paleocene-Eocene Thermal Maximum in shallow marine sediments, ancient West Siberian Sea" for more general use.
DOI: 10.6084/m9.figshare.5596876.v1
title: (year 2007)China's interregional input and output table - 6 departments and 8 regions.xls

description: This is an input and output table of 2007 for China's 6 regions and 8 departments.
DOI: 10.6084/m9.figshare.5596894.v1
title: Variation of trophic cascade strength in an ant-fig wasp-fig system

description: Original data for:<b>Figure 3:</b> Box plot of the number of weaver ant nests (a) and weaver ants active in fruit branches (b) of <i>Ficus racemosa </i>in different seasons. Different letters represent significant difference between each season, pairwise comparisons conducted using Tukey and Kramer test. Each circle represents a data point. <b>Figure 4:</b> Mean number (±SD) of weaver ants, <i>Oecophyla smaragdina </i>(a), pollinating fig wasp activity, <i>Ceratosolen fusciceps </i>(b), and gall making fig wasp, <i>Sycophagus</i> <i>mayri </i>activity (c) from 6:00 to 20:00 in different seasons. Symbols represent means and drop lines show the standard deviation. Different letters represent significant differences between each season, significance derived using nonparametric rank-based analysis of longitudinal data with ANOVA-type statistic (ATS). <b>Figure 5:</b> Box plot of foundress numbers (a) and oviposition scars of non-pollinating fig wasps (b) in the fruits of <i>Ficus racemosa </i>after receptive stage<i> </i>in different seasons. Different letters represent significant difference between each season, pairwise comparisons using Tukey and Kramer test. Each circle represents a data point. <b>Figure 6:</b> Mean (±SD) interaction strength (a) of weaver ant, <i>Oecophyla smaragdina</i>, on the gall making fig wasp, <i>Sycophagus</i><i> mayri</i>, and the strength of the trophic cascade (b) in different seasons. Different letters represent significant differences between each season.
DOI: 10.6084/m9.figshare.5596858.v1
title: Supporting information S1

description: This supporting information provides the same tables as seen in the article "Ferrimagnetic iron sulfide formation and methane venting across the Paleocene-Eocene Thermal Maximum in shallow marine sediments, ancient West Siberian Sea" for more general use.
DOI: 10.17608/k6.auckland.5596840
title: GIS shape files of realm maps

description: These files are to aid use the maps in a Geographical Information System that were published in this paper:Costello MJ, Tsai P, Wong PS, Cheung A, Basher Z., Chaudhary C. 2017. Marine biogeographic realms and species endemicity. <i>Nature Communications</i> 8 (1057). https://www.nature.com/articles/s41467-017-01121-2<br>
DOI: 10.17608/k6.auckland.5596840.v1
title: GIS shape files of realm maps

description: These files are to aid use the maps in a Geographical Information System that were published in this paper:Costello MJ, Tsai P, Wong PS, Cheung A, Basher Z., Chaudhary C. 2017. Marine biogeographic realms and species endemicity. <i>Nature Communications</i> 8 (1057). https://www.nature.com/articles/s41467-017-01121-2<br>
DOI: 10.6084/m9.figshare.5596894.v2
title: Variation in trophic cascade strength is triggered by top-down process in an ant-wasp-fig system

description: R code and Original data for:<b>Figure 2:</b> Number of wasps from branches with weaver ants or without ants in the cool-dry (A), hot-dry (B), and rainy (C) seasons. Species composition is shown on the top of bar plot for each season, left pie (with ants), right pie (ants excluded). Syconia in the cool-dry season in ant exclusion treatments were all aborted. Linear mixed-effects models were fitted, with the number of fig wasps as the response variable, with treatment (trees with or without <i>Oecophylla smaragdina</i> ) as the fixed factor, tree as a random factor. * (<i>P</i> &lt; 0.05), ** (<i>P </i>&lt; 0.01), *** (<i>P </i>&lt; 0.001), NS = not significant. CF = <i>Ceratosolen fusciceps</i>; SM = <i>Sycophaga</i><i> mayri</i>; ST = <i>S. testacea</i>; SA = <i>S. agraensis</i>; AS = <i>Apocrypta </i>sp.; AW = <i>A. westwoodi</i>. Columns and bars show mean ± SD. # represent pollinating fig wasp. Numbers under the pie represent replications of syconium sampled.<b>Figure 3: </b>Number of seed from branches with weaver ants or ants excluded in cool-dry, hot-dry, and rainy seasons. * (<i>P</i> &lt; 0.05), *** (<i>P </i>&lt; 0.001). Numbers in the box represent replications of syconium sampled.<b></b><b>Figure 4:</b> Mean (±SD) interaction strength (A) of weaver ant, <i>Oecophyla smaragdina</i>, on the gall making fig wasp, <i>Sycophagus</i><i> mayri</i>, and the strength of the trophic cascade (B) in different seasons. * (<i>P</i> &lt; 0.05), *** (<i>P </i>&lt; 0.001).<b> </b>Numbers in the brackets represent replications of with ants/ant exclusion branchlets pairs.<b>Figure 5: </b>Box plot of the number of weaver ant nests (A), number of weaver ants foraging in fig-bearing branchlets (B), foundress number (C), and oviposition scars of non-pollinating fig wasps (D) in the fruits of <i>Ficus racemosa </i>after receptive stage of <i>Ficus racemosa </i>in different seasons. Different letters represent significant differences between each season, pairwise comparisons conducted using Tukey and Kramer test. Each circle represents a data point. <b>Figure 6: </b>Number (mean ± SD) of weaver ants, <i>Oecophyla smaragdina </i>(A), pollinating fig wasp activity, <i>Ceratosolen fusciceps </i>(B), and gall making fig wasp, <i>Sycophagus</i> <i>mayri </i>activity (C) from 6:00 to 20:00 in different seasons. Symbols represent means and drop lines show the standard deviation. Different letters represent significant differences between each season, significance derived using nonparametric rank-based analysis of longitudinal data with ANOVA-type statistics (ATS).<br>
DOI: 10.6084/m9.figshare.5596828
title: A new Cretaceous dercetid fish (Neoteleostei: Aulopiformes) from the Turonian of Colombia

description: The extinct neoteleost family Dercetidae includes elongate, long-jawed marine fishes that are known from the Late Cretaceous to Paleocene in deposits from the Levant, Europe, North Africa, England, Mexico and Brazil. The fossil record of the family in South America is very sparse and previously was restricted to outcrops in Brazil. Herein we describe a new dercetid fish from the Turonian of Colombia, †<i>Candelarhynchus padillai</i> gen. et sp. nov. A single articulated specimen is preserved in part and counterpart; the posterior part of the fish is missing. The specimen differs from other dercetid species by the following unique combination of morphological features: lack of scutes on the flanks of the body, presence of a single pair of transverse processes associated with the abdominal vertebrae, roofed posttemporal fossa, single row of small conical teeth on the dentary and maxilla, toothless premaxilla ornamented with pronounced longitudinal striations and protruding forward far beyond the anterior end of the dentary, and relatively large pectoral fins positioned high on the body. When included in a phylogenetic analysis of †Enchodontoidei, †<i>C. padillai</i> gen. et sp. nov. falls within a monophyletic family Dercetidae and is placed as sister taxon to the Late Cretaceous dercetid †<i>Hastichthys</i> from Israel, indicating faunal connections between the Eastern and Western Tethys. The new taxon provides novel insights into the distribution of dercetid fishes in the Western Tethys region during the early Late Cretaceous. http://zoobank.org/urn:lsid:zoobank.org:pub:29F97139-98BD-48E5-AAC0-091980F866E2
DOI: 10.6084/m9.figshare.5596831
title: Supplement data 3: Intraspecific distance

description: Intraspecific distance generated by BOLD using Kimura 2-parameter and MUSCLE alignment.
DOI: 10.6084/m9.figshare.5596894.v4
title: Variation in trophic cascade strength is triggered by top-down process in an ant-wasp-fig system

description: R code and Original data for:<b>Figure 2:</b> Number of wasps from branches with weaver ants or without ants in the cool-dry (A), hot-dry (B), and rainy (C) seasons. Species composition is shown on the top of bar plot for each season, left pie (with ants), right pie (ants excluded). Syconia in the cool-dry season in ant exclusion treatments were all aborted. Linear mixed-effects models were fitted, with the number of fig wasps as the response variable, with treatment (trees with or without <i>Oecophylla smaragdina</i> ) as the fixed factor, tree as a random factor. * (<i>P</i> &lt; 0.05), ** (<i>P </i>&lt; 0.01), *** (<i>P </i>&lt; 0.001), NS = not significant. CF = <i>Ceratosolen fusciceps</i>; SM = <i>Sycophaga</i><i> mayri</i>; ST = <i>S. testacea</i>; SA = <i>S. agraensis</i>; AS = <i>Apocrypta </i>sp.; AW = <i>A. westwoodi</i>. Columns and bars show mean ± SD. # represent pollinating fig wasp. Numbers under the pie represent replications of syconium sampled.<b>Figure 3: </b>Number of seed from branches with weaver ants or ants excluded in cool-dry, hot-dry, and rainy seasons. * (<i>P</i> &lt; 0.05), *** (<i>P </i>&lt; 0.001). Numbers in the box represent replications of syconium sampled.<b></b><b>Figure 4:</b> Mean (±SD) interaction strength (A) of weaver ant, <i>Oecophyla smaragdina</i>, on the gall making fig wasp, <i>Sycophagus</i><i> mayri</i>, and the strength of the trophic cascade (B) in different seasons. * (<i>P</i> &lt; 0.05), *** (<i>P </i>&lt; 0.001).<b> </b>Numbers in the brackets represent replications of with ants/ant exclusion branchlets pairs.<b>Figure 5: </b>Box plot of the number of weaver ant nests (A), number of weaver ants foraging in fig-bearing branchlets (B), foundress number (C), and oviposition scars of non-pollinating fig wasps (D) in the fruits of <i>Ficus racemosa </i>after receptive stage of <i>Ficus racemosa </i>in different seasons. Different letters represent significant differences between each season, pairwise comparisons conducted using Tukey and Kramer test. Each circle represents a data point. <b>Figure 6: </b>Number (mean ± SD) of weaver ants, <i>Oecophyla smaragdina </i>(A), pollinating fig wasp activity, <i>Ceratosolen fusciceps </i>(B), and gall making fig wasp, <i>Sycophagus</i> <i>mayri </i>activity (C) from 6:00 to 20:00 in different seasons. Symbols represent means and drop lines show the standard deviation. Different letters represent significant differences between each season, significance derived using nonparametric rank-based analysis of longitudinal data with ANOVA-type statistics (ATS).<br>
DOI: 10.6084/m9.figshare.5596831.v1
title: Supplement data 3: Intraspecific distance

description: Intraspecific distance generated by BOLD using Kimura 2-parameter and MUSCLE alignment.