cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pea2q8
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cestrum diurnum",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023532-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mbkmu5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cestrum diurnum",
 "Country is Fiji",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023534-250920141307145/datasets/export for details.
DOI: 10.15468/dl.mx7mzd
title: Occurrence Download

description: A dataset containing 22814539 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is one of (Africa, Asia, Oceania, Europe, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC-BY-NC 4.0, CC-BY 4.0)",
 "Month is one of (January, February, March, April, May, June)",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "Year is 2017"
 ]
}

 The dataset includes 22814539 records from 3581 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023442-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tep262
title: Occurrence Download

description: A dataset containing 89001 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Asteraceae"
 ]
}

 The dataset includes 89001 records from 183 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069174-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5065/b9xa-zt95
title: ICARUS Chamber Experiment: Caltech Atmospheric Chamber_20150130_METHACROLEIN/Methyl nitrite/10102-44-0_Hydroxyl radical_Ammonium sulfate_RH40%

description: Goals: This experiment was done to study the Methacrolein high NO2 photooxidation in the presence of wet ammonium sulfate (AS) seeds at RH 40%, since the other experiments were done at low RH and without seed particles. The hypothesis is that particle liquid water will decrease SOA formation because water will hydrolyze HMML instead of allowing it to oligomerize on the particle surface. This liquid water is also hypothesized to liberate 2-methylgycleric acid (2MGA) from the aerosol to the gas phase.Summary: Interestingly, gas-phase 2MGA is not significantly enhanced and aerosol mass is not significantly decreased in the 40% RH experiment (Experiment #12) compared to the dry experiments. It is possible that the liquid water content under these conditions (30% by volume) is not high enough to dominate the reaction with HMML or there is a barrier to 2MGA volatilization. We do see the hypothesis confirmed in the fully deliquesced particle in the 85% RH experiment (150208)Organization: Caltech Atmospheric Chamber Lab Affiliation: California Institute of Technology, Pasadena, CA Chamber: Near/Far Bag 2012-2015 (Tran)Experiment Category: Gas phase chemical reaction, Aerosol formation Oxidant: Hydroxyl radical Reactants: METHACROLEIN, Methyl nitrite, 10102-44-0 Reaction Type: Photooxidation Relative Humidity: 40 Temperature: 25 Seed Name: Ammonium sulfate Pressure: 750 Torr
DOI: 10.15468/dl.58zgwx
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Living Specimen, Occurrence evidence, Machine Observation)",
 "Continent is South America",
 "Country is Argentina",
 "Geometry POLYGON((-57.68189 -34.97512,-57.73068 -35.08167,-57.43792 -35.26779,-57.25666 -35.43289,-57.38522 -35.5617,-57.52428 -35.6786,-57.37286 -35.75763,-57.11557 -35.48222,-57.12994 -35.36303,-57.25693 -35.2181,-57.48723 -35.04021,-57.60558 -34.95112,-57.68189 -34.97512))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Phylloscartes ventralis (Temminck, 1824)"
 ]
}

 The dataset includes 37 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069176-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7unjxa
title: Occurrence Download

description: A dataset containing 3222 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-122.89546 49.3249,-122.89825 49.32172,-122.89973 49.31698,-122.89774 49.31186,-122.89496 49.30813,-122.89164 49.30625,-122.88568 49.30604,-122.88235 49.3076,-122.87936 49.30963,-122.87738 49.31442,-122.87808 49.31822,-122.88033 49.32365,-122.88475 49.32722,-122.8891 49.32784,-122.89336 49.32699,-122.89546 49.3249))"
 ]
}

 The dataset includes 3222 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069177-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zn7u5m
title: Occurrence Download

description: A dataset containing 1212 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Acer saccharum Marshall",
 "Year 1910-1955"
 ]
}

 The dataset includes 1212 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069178-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a3grbg
title: Occurrence Download

description: A dataset listing the 104 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry MULTIPOLYGON(((168.70495 -46.14555,168.70136 -46.14246,168.70153 -46.14172,168.69746 -46.12668,168.68638 -46.11347,168.66958 -46.1036,168.66878 -46.10328,168.64996 -46.09815,168.62978 -46.09732,168.61023 -46.10086,168.59319 -46.10843,168.58035 -46.11928,168.57296 -46.13237,168.57287 -46.13333,168.56649 -46.13685,168.5553 -46.14857,168.54987 -46.16211,168.55073 -46.17616,168.5578 -46.18933,168.57038 -46.20034,168.58726 -46.20811,168.60677 -46.21188,168.61779 -46.21155,168.6178 -46.21185,168.61998 -46.21181,168.62426 -46.21165,168.62785 -46.21143,168.63292 -46.21065,168.64184 -46.21267,168.64211 -46.21269,168.66233 -46.21196,168.68124 -46.20693,168.69699 -46.19809,168.70802 -46.1863,168.71326 -46.17272,168.7122 -46.15868,168.70495 -46.14555)))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Arachnida, Athoracophoridae, Rhytididae, Onychophora, Insecta)"
 ]
}

 The dataset's 104 records were derived from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069175-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bm9ssj
title: Occurrence Download

description: A dataset containing 9145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Vaccinium uliginosum L., Acer saccharum Marshall)",
 "Year 1910-1955"
 ]
}

 The dataset includes 9145 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069180-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15741405
title: Model output supporting the publication "Amplified bottom water acidification rates on the Bering Sea shelf from 1970–2022"

description: This dataset contains all of the model output required to generate the figures in the manuscript "Amplified bottom water acidification rates on the Bering Sea shelf from 1970–2022".  The model simulation was run using the Bering10K ROMS model and the BESTNPZ ecosystem model, release K20P19.  

The '_average_' files contain weekly averaged output for 5-year segments of surface and bottom variables displayed in the figures. The '_station_' files contain 6-hourly 3D output for 35 predetermined locations throughout the model domain, with the M2 and M8 mooring locations at index values 2 and 8, respectively.  The Taylor series decomposition output is located in the .mat files.
DOI: 10.5281/zenodo.15741406
title: Model output supporting the publication "Amplified bottom water acidification rates on the Bering Sea shelf from 1970–2022"

description: This dataset contains all of the model output required to generate the figures in the manuscript "Amplified bottom water acidification rates on the Bering Sea shelf from 1970–2022".  The model simulation was run using the Bering10K ROMS model and the BESTNPZ ecosystem model, release K20P19.  

The '_average_' files contain weekly averaged output for 5-year segments of surface and bottom variables displayed in the figures. The '_station_' files contain 6-hourly 3D output for 35 predetermined locations throughout the model domain, with the M2 and M8 mooring locations at index values 2 and 8, respectively.  The Taylor series decomposition output is located in the .mat files.
DOI: 10.5281/zenodo.15742243
title: Comparing statistically based CTA tools - payloads 1 of 3

description: Payloads used for collecting timing measurements from implementations of CRYSTALS-Kyber.
DOI: 10.5281/zenodo.15742244
title: Comparing statistically based CTA tools - payloads 1 of 3

description: Payloads used for collecting timing measurements from implementations of CRYSTALS-Kyber.
DOI: 10.15468/dl.s9tajj
title: Occurrence Download

description: A dataset containing 1121 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "Geometry POLYGON((-75.01451 -15.71455,-70.46125 -18.32205,-69.83901 -18.28254,-69.38467 -17.62079,-69.52295 -17.16645,-69.91802 -16.44544,-70.3131 -15.91208,-71.01436 -15.57627,-72.17984 -15.14168,-73.22679 -14.74661,-74.2046 -14.86513,-75.01451 -15.71455))",
 "OccurrenceStatus is Present",
 "TaxonKey is Cinclodes albiventris (Philippi & Landbeck, 1861)"
 ]
}

 The dataset includes 1121 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069183-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7yjq6u
title: Occurrence Download

description: A dataset containing 51042 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Acer saccharum Marshall",
 "Year 1980-2025"
 ]
}

 The dataset includes 51042 records from 243 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069179-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15659473
title: RTLS Data for Accessible Cultural Heritage Experiences

description: Data collected for the purposes of comparing the performance of different sensors for the facilitation of accessible cultural heritage experiences. The data collected compares the performance of BLE, UWB, and GPS in an outdoor, rural heritage site in Ireland, and the performance of BLE and UWB in an indoor heritage site.
DOI: 10.5281/zenodo.15659474
title: RTLS Data for Accessible Cultural Heritage Experiences

description: Data collected for the purposes of comparing the performance of different sensors for the facilitation of accessible cultural heritage experiences. The data collected compares the performance of BLE, UWB, and GPS in an outdoor, rural heritage site in Ireland, and the performance of BLE and UWB in an indoor heritage site.
DOI: 10.15468/dl.aqgsbh
title: Occurrence Download

description: A dataset containing 743 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "OccurrenceStatus is Present",
 "TaxonKey is Sicalis raimondii Taczanowski, 1874"
 ]
}

 The dataset includes 743 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069184-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.szrvev
title: Occurrence Download

description: A dataset containing 159535 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Procyon lotor (Linnaeus, 1758)"
 ]
}

 The dataset includes 159535 records from 496 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069181-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p2pjru
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-9959.0",
 "Geometry POLYGON((-123.86684 25.00624,-65.5875 25.00624,-65.5875 47.53615,-123.86684 47.53615,-123.86684 25.00624))",
 "TaxonKey is Varanus niloticus (Linnaeus, 1766)"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069185-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ret3zj
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is South America",
 "Country is Argentina",
 "DatasetKey is one of (EOD – eBird Observation Dataset, iNaturalist Research-grade Observations, Xeno-canto - Bird sounds from around the world)",
 "Geometry POLYGON((-57.66273 -34.96739,-57.74301 -35.0451,-57.24671 -35.43852,-57.43648 -35.65231,-57.327 -35.70566,-57.09795 -35.42061,-57.3124 -35.15259,-57.54103 -35.00161,-57.66273 -34.96739))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Phylloscartes ventralis (Temminck, 1824)"
 ]
}

 The dataset includes 37 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069186-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12285508
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15156/bio/sh0185853.10fu
title: SH0185853.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0185854.10fu
title: SH0185854.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0185855.10fu
title: SH0185855.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0185856.10fu
title: SH0185856.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.3886/e242793
title: An aggregated dataset of serially collected influenza A virus morbidity and titer measurements from virus-infected ferrets.

description: Data from influenza A virus (IAV) infected ferrets (Mustela putorius furo) provides invaluable information towards the study of novel and emerging viruses that pose a threat to human health. This gold standard animal model can recapitulate many clinical signs of infection present in IAV-infected humans, support virus replication of human and zoonotic strains without prior adaptation, and permit evaluation of virus transmissibility by multiple modes. While ferrets have been employed in risk assessment settings for &gt;20 years, results from this work are typically reported in discrete stand-alone publications, making aggregation of raw data from this work over time nearly impossible. Here, we describe a dataset of 746 ferrets inoculated with 129 unique IAV, conducted by a single research group (NCIRD/ID/IPB/Pathogenesis Laboratory Team) under a uniform experimental protocol. This collection of morbidity, mortality, and viral titer data represents the largest publicly available dataset to date of in vivo-generated IAV infection outcomes on a per-individual ferret level.

Published Data Descriptor for more information:
Kieran TJ, Sun X, Creager HM, Tumpey TM, Maine TR, Belser JA. 2024. An aggregated dataset of serial morbidity and titer measurements from influenza A virus-infected ferrets. Sci Data 11, 510. https://doi.org/10.1038/s41597-024-03256-6

Additional publications using and describing data:
Kieran TJ, Sun X, Maines TR, Beauchemin CAA, Belser JA. 2024. Exploring associations between viral titer measurements and disease outcomes in ferrets inoculated with 125 contemporary influenza A viruses. J Virol. 98:e01661-23. https://doi.org/10.1128/jvi.01661-23

Belser JA, Kieran TJ, Mitchell ZA, Sun X, Mayfield K, Tumpey TM, Spengler JR, Maines TR. 2024. Key considerations to improve the normalization, interpretation and reproducibility of morbidity data in mammalian models of viral disease. Dis Model Mech; 17 (3): dmm050511. https://doi.org/10.1242/dmm.050511

Kieran TJ, Sun X, Maines TR, Belser JA. 2024. Machine learning approaches for influenza A virus risk assessment identifies predictive correlates using ferret model in vivo data. Communications Biology 7, 927. https://doi.org/10.1038/s42003-024-06629-0

Additional publications supporting responsible use and interpretation of data by others:
Kieran TJ, Maine TR, Belser JA. 2025. Eleven quick tips to unlock the power of in vivo data science. PLoS Comput Biol, 21(4):e1012947. https://doi.org/10.1371/journal.pcbi.1012947

Kieran TJ, Maine TR, Belser JA. 2025. Data alchemy, from lab to insight: Transforming in vivo experiments into data science gold. PLoS Pathog, 20(8):e1012460. https://doi.org/10.1371/journal.ppat.1012460

Change / Update Log:
Nov 7, 2024: Corrected typographical errors in Origin column for A/Ohio/13/2017 and A/Hawaii/28/2020

July 1, 2025: Added 3 viruses (A/Texas/36/1991, A/Texas/37/2024, A/Michigan/90/2024, total n=18 new rows)
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description: (Downloaded 1/7/2026)
DOI: 10.15156/bio/sh0185857.10fu
title: SH0185857.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.