cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5024939.v1
title: Hammers_mith-n30r95 parietal lobe MRI atlas database

description: MR images and segmentation labels for the parietal lobe (30 subjects, individual space), whole-brain maximum probability map (MNI152 space), regional probability maps (MNI152 space). These are the data necessary for reproducing the findings of Wild et al. (2017; cf. http://soundray.org/pl-paper for current publication status). The data are published here in fulfilment of the data availability requirements of PLOS journals (http://journals.plos.org/plosone/s/data-availability). The complete atlas database with 95 anatomical regions is available at http://brain-development.org/brain-atlases/.<br>
DOI: 10.6084/m9.figshare.21907753.v1
title: Analysis of Adherence to Fluoxetine Treatment through its Plasma Concentration

description: Abstract Depression plays an important role in non-adherence to medical recommendations. Fluoxetine is a first line of depression treatment. This study aimed to evaluate adherence to drug therapy in fluoxetine users by different methods. A cross-section study was conducted with 53 depressed patients on fluoxetine for at least six months. Drug therapy adherence was assessed by validated questionnaires [Brief Medication Questionnaire (BMQ) and Morisky-Green test (MG)] and by the blood concentration of fluoxetine and its active metabolite norfluoxetine. Blood samples were taken before the daily first dose of fluoxetine. The plasmatic concentration of fluoxetine and norfluoxetine indicated that 58.5% volunteers were within the recommended therapeutic range and thus considered adherent to drug therapy. However, questionnaires indicated a non-adherent majority: 41.5% patients had a high degree of adherence in MG and only 13.2% were adherent to pharmacological treatment in BMQ. Most fluoxetine users showed a plasma concentration of fluoxetine and norfluoxetine within the therapeutic range, despite the low adherence to the drug therapy evaluated by the questionnaires. Thus, we suggest that plasma levels of fluoxetine and norfluoxetine could be used as the main method to check adherence to treatment.
DOI: 10.6084/m9.figshare.26384962.v1
title: Supplementary Material for: Predictive value of serum soluble ST2 in adult patients undergoing cardiac surgery for acute kidney injury

description: Introduction: Cardiac surgery is related to an increased risk of postoperative acute kidney injury (AKI). Serum soluble ST2 (sST2) is highly predictive of several cardiovascular diseases and may also be involved in renal injury. This study explored the relationship between serum sST2 levels measured at ICU admission and the development of AKI after cardiac surgery. 
Methods: We prospectively conducted an investigation on consecutive patients who underwent cardiac surgery. sST2 was immediately measured at ICU admission. The relationship between the levels of sST2 and the development of AKI was explored using stepwise logistic regression. 
Results: Among the 500 patients enrolled, AKI was observed in 207 (41%) patients. Serum sST2 levels in AKI patients were higher than those without AKI (61.46 ng/ml [46.52, 116.25] versus 38.91 ng/ml [28.74, 50.93], P &lt; 0.001). Additionally, multivariable logistic regression analysis showed that as progressively higher tertiles of serum sST2, the odds ratios (ORs) of AKI gradually increased (adjusted ORs of 1.97 [95% CI, 1.13-3.45], and 4.27 [95% CI, 2.36-7.71] for tertiles 2 and 3, respectively, relative to tertile 1, P &lt; 0.05). The addition of sST2 further improved reclassification (P &lt; 0.001) and discrimination (P &lt; 0.001) over the basic model, which included established risk factors.
Conclusion: Serum sST2 levels at ICU admission were associated with the development of postoperative AKI and improved the identification of AKI after cardiac surgery.
DOI: 10.17632/b2sss2w8vw
title: Data for: Fluorescent Parallel Electrophoresis Assay of Enzyme Inhibition

description: These data are related to the following publication:
L. D. Casto-Boggess, L.A. Holland, Fluorescent Parallel Electrophoresis Assay of Enzyme Inhibition, Analytica Chimica Acta. 2024
DOI: 10.5061/dryad.qk514d2
title: Data from: Sexual ornaments but not weapons trade off against testes size in primates
DOI: 10.6084/m9.figshare.28740211.v1
title: R code - Morphometrics from Early evolvability in arthropod tagmosis exemplified by a new radiodont from the Burgess Shale

description: R code for summarizing relative gill length data.
DOI: 10.17632/6jcsz5bywz
title: Automated relative and absolute environmental sustainability assessment

description: This is the code for the automated relative and absolute environmental sustainability assessment. In the "exec_notebooks" folder can be found the executables. In the "data" folder the input/output data is stored.
DOI: 10.17632/py4d9nz8zz
title: Web Design for Elderly Accessibility: A Systematic Literature Review 

description: Contains the results of two Systematic Literature Reviews focused on Web Design for Elderly Accessibility. 
We proposed a SLR to identify the main problems of older adults related to web navigation and another SLR to determine the design actions to be applied to improve the accessibility of web interfaces focused on the elderly.
We identified 30 accessibility problems, 49 proposed solutions, 16 accessible design alternatives, 12 ways to evaluate the proposals and 5 adaptation models for older adults. The data obtained were classified and grouped into categories.
DOI: 10.6084/m9.figshare.28693367.v1
title: A high-resolution Net Ecosystem Exchange dataset (500m, 8-day intervals) for the Qinghai-Tibet Plateau

description: We developed a high-resolution NEE dataset (500m, 8-day intervals) for the QTP, utilizing in-situ measurements from 36 plateau sites and 80 forest sites outside it, combined with remote sensing and meteorological data. Various combinations of environmental variables and machine learning algorithms were applied to assess prediction uncertainties. The results indicated that the annual mean NEE for the QTP averaged -147.68 ± 15.02 Tg C yr<sup>-1</sup>, with an annual increase of 0.94 Tg C yr<sup>-1</sup> from 2002 to 2022. Meadows contributed most (38.1%) to total NEE, followed by shrubs (26.7%), forests (23%), steppes (11.8%), and wetlands (0.5%). Compared to previous studies, this research utilized more eddy covariance observations and covered all QTP ecosystem types, except for deserts. The updated NEE prediction dataset for the QTP provided essential data for advancing regional carbon cycle research.
DOI: 10.17632/xn4pj3rt7b
title: A Wearable Open-Source Electrical Impedance Tomography Device

description: Design files for a wearable open-source electrical impedance tomography device.
DOI: 10.6084/m9.figshare.11728980.v1
title: Aqualitas Database (full release)

description: AQUALITAS database (full release) corresponding to 100 diatom taxa with about 100 specimens/taxon. The images have been taken with a 60x NA=0.85 using oblique illumination. If you use this database please cite the following publications:<br>[1] Bueno, G. et al, “Automated Diatom Classification (Part A): Handcrafted feature approaches", Applied Sciences, 7, 753, pp. 1-22 (2017) doi: 10.3390/app7080753[2] Pedraza, A. et al, “Automated Diatom Classification (Part B): A Deep Learning Approach" Applied Sciences, 7, 460, pp. 1-25 (2017) doi: 10.3390/app7050460<br>
DOI: 10.6084/m9.figshare.12764561.v1
title: pnas.1812593116.sd03: Global and regional SRB annual estimates and 95% uncertainty intervals, 1950–2017

description: Global and regional SRB annual estimates and 95% uncertainty intervals, 1950–2017.<br><br>Dataset S3: global and regional SRB annual estimates and 95% uncertainty intervals, 1950–2017, formed part of the original submission and has been peer reviewed. The journal post it as supplied by the authors.<br>Supplement to: Chao, F., Gerland, P., Cook, A.R. and Alkema, L., 2019. Systematic assessment of the sex ratio at birth for all countries and estimation of national imbalances and regional reference levels. Proceedings of the National Academy of Sciences, 116(19), pp.9303-9311.
DOI: 10.6084/m9.figshare.24311287.v1
title: Correlation matrix

description: A total of 4005 correlation coefficients were presented. In this research, high correlations were considered to be those lower than -0.8 and higher than 0.8.
DOI: 10.6084/m9.figshare.28603907.v1
title: <b>The importance of early biomarkers in the identification of neurodegenerative disorders</b>

description: In questa nota, abbiamo presentato i dati di 31 pazienti iRBD (idiopathic Rapid Eye Movement (REM) sleep Behaviour Disorder) studiati per tre anni per valutare la loro eventuale fenoconversione al morbo di Parkinson e ad altre condizioni neurodegenerative accertate.L'iRBD è una condizione prodromica coinvolta nello sviluppo di patologie neurologiche come il morbo di Parkinson. In uno studio precedente abbiamo valutato i livelli di mRNA del fattore di trascrizione nelle cellule T CD4+ come biomarcatori predittivi della fenoconversione nell'iRBD. Abbiamo dimostrato che tra i livelli di mRNA dei fattori di trascrizione analizzati, i livelli di mRNA di STAT1, GATA3 e FOXP3 nelle cellule T CD4+ possono essere utilizzati per predire la fenoconversione.
DOI: 10.6084/m9.figshare.9978833.v1
title: Respiratory Pattern_Simulation_ Model (RSM)

description: You can use this Matlab toolbox to generate simulated respiratory pattern data, and then apply to construct the deep learning model. Please cite the following paper if you wish to use this code: Wang Y L, Hu M H*, Li Q L, Zhang X P, Zhai G T, Yao N. Abnormal respiratory patterns classifier may contribute to large-scale screening of people infected with COVID-19 in an accurate and unobtrusive manner [J]. arXiv preprint arXiv:2002.05534, 2020. If you have any questions, you can send a request to: humenghan89@163.com<br>
DOI: 10.6084/m9.figshare.15094083.v2
title: Supplemental Materials

description: Supplemental Materials for "Improving QSAR Modeling for Predictive Toxicology using Publicly Aggregated Semantic Graph Data and Graph Neural Networks".<br>Includes:<br>- Supplemental Tables S1 and S2 (separate sheets in the same .xlsx file)- Assay weights for GNNs trained on PXR antagonism and HepG2 cell viability assays (as 2 TSV files)- ROC plots for all 52 Tox21 assays investigated in the study (single ZIP archive containing separate PDF files for each assay)- Tabular summary of all models' performance on all 52 assays (TSV file)- Tabular summary statistics comparing means for two selected assays w.r.t the 3 QSAR models
DOI: 10.6084/m9.figshare.28329446.v1
title: Proof-of-principle demonstration of muon production with an ultrashort high-intensity laser

description: raw experimental data, figure source data, SNIP code and Geant4 setting code
DOI: 10.6084/m9.figshare.9505259.v2
title: phenotype and genotype data_data2019.tar.gz

description: phenotype and genotype data<br>
DOI: 10.17632/f8h9fpkgxg
title: Data for: Development and evolution of euxinic wedge on the ferruginous outer shelf of early Cambrian stratified ocean in the Yangtze Block
DOI: 10.17632/wjns8j3z6y
title: Original western blot images for Cell-20240920

description: Original western blot images
DOI: 10.6084/m9.figshare.23790609.v3
title: Data and Code from Sustained emission reductions have restrained the ozone pollution over China

description: Data and Code from Sustained emission reductions have restrained the ozone pollution over China
DOI: 10.6084/m9.figshare.8081657.v1
title: hcm data.csv

description: This is a data set that contains CMR features for patients with hypertrophic cardiomyopathy.
DOI: 10.25452/figshare.plus.27327996.v1
title: iPSCORE Analysis: Early Developmental Regulatory Variation Mashr Results

description: This file contains the mashr results run on the three early developmental iPSCORE tissues and 47 adult GTEx tissues. We used mashr to calculate the tissue-specificity of pairs of eGenes and their eQTL lead variants across all 50 tissues. The file contains the following columns; <b>gene_variant </b>the space-separated identifier for the Gencode gene ID and the eQTL lead variant, <b>ntissues_tested</b> the total number of tissues that the gene_variant was tested in, <b>ntissues_significant</b> the total number of tissues that the gene_variant was significant (local false sign rate [LFSR] &lt; 0.05], <b>nipscore_tested</b> the number of iPSCORE tissues that the gene_variant was tested in, <b>ngtex_tested </b>the number of GTEx tissues that the gene_variant was tested in. The remaining columns contain the mashr-calculated LFSR values for the three iPSCORE tissues and 47 GTEx tissues.
DOI: 10.6084/m9.figshare.17304221.v1
title: Solar and wind power data from the Chinese State Grid Renewable Energy Generation Forecasting Competition

description: Two years (2019, 2020) on-site data with time granularity of 15 minutes of six wind farms and eight solar stations in China was recorded, which includes weather conditions and power generation information.
DOI: 10.6084/m9.figshare.18857879.v2
title: sequencing file

description: raw data for RNAS study
DOI: 10.6084/m9.figshare.25551132.v1
title: DaRT_rawdata.xlsx

description: <i>Silybum marianum</i> L. is a multipurpose crop native to the Mediterranean and middle east regions and mainly known for the hepatoprotective properties of fruit-derived silymarin. Despite growing interest in milk thistle as a versatile crop with medicinal value, its potential in agroindustry is hindered by incomplete domestication and limited genomic knowledge, impeding the development of competitive breeding programs. The present study aimed to evaluate genetic diversity in a panel of <i>S. marianum</i> L. accessions (n=31), previously characterized for morphological and phytochemical traits, using 5,178 polymorphic DArTseq SNP markers. The genetic structure investigated using both parametric and non-parametric approaches (e.g. PCA, AWclust, Admixture), revealed three distinctive groups reflecting geographical origins. Indeed, Pop1 grouped accessions from Central Europe and UK, Pop3 consisted mainly of accessions of Italian origin, and Pop2 included accessions from different geographical areas. Interestingly, Italian genotypes showed a divergent phenotypic distribution, particularly in fruit oleic and linoleic acid content, compared to the other two groups. Genetic differentiation among the three groups, investigated by computing pairwise fixation index (F<sub>ST</sub>), confirmed a greater differentiation of Pop3 compared to other subpopulations, also based on other diversity indices (e.g. private alleles, heterozygosity). Finally, 22 markers, of which seven were fixed within Pop3, were declared as putatively under natural selection, and significantly affected some important phenotypic traits such as oleic, arachidonic, behenic and linoleic acid content. These findings suggest that these markers could be exploited in specific breeding programs, potentially aimed at diversifying the use of milk thistle.
DOI: 10.6084/m9.figshare.26090668.v1
title: DevCCF_P56_MRI-T2_50um_BrainParcellationTctMask.nii.gz

description: P56 T2w TCT mask
DOI: 10.6084/m9.figshare.26713714.v1
title: Additional file 2 of Subregion preference in the long-range connectome of pyramidal neurons in the medial prefrontal cortex

description: Additional file 2. Fezf2 and Plxnd1 input and output raw data.
DOI: 10.6084/m9.figshare.27216315.v1
title: GlobeDoc Wireframes 2010-2017.pdf

description: GlobeDoc Wireframes 2010-2017.
DOI: 10.6084/m9.figshare.29077010.v1
title: Source data for "Thermally induced mimicry of quantum cluster excitations and implications for the magnetic transition in FePSe3"

description: Source files for the data in the published paper. Data are stored as .jld2 files.
DOI: 10.6084/m9.figshare.3512546.v1
title: Appendix D. Results of a Kruskal-Wallis test of mean rank comparing total shrub cover and total understory cover across buffer and undisturbed stream edges with respect to disturbance treatment and location on the transect.

description: Results of a Kruskal-Wallis test of mean rank comparing total shrub cover and total understory cover across buffer and undisturbed stream edges with respect to disturbance treatment and location on the transect.
DOI: 10.6084/m9.figshare.7021709.v1
title: Code from ENSO effects on the transpiration of eastern Amazon trees

description: Code used on R software
DOI: 10.6084/m9.figshare.c.3631589_d3.v1
title: Additional file 2: of 5-azacytidine induces transcriptome changes in Escherichia coli via DNA methylation-dependent and DNA methylation-independent mechanisms

description: Microarray fold-changes, p values, and false discovery rates (FDR) for all E. coli genes from early stationary phase 5-azaC treated cells. Fold-change is expression in the presence of 5-azaC divided by expression in the absence of 5-azaC and is log2 transformed. P values are from one sample t-tests, and the FDR is the Benjamini-Hochberg false discovery rate. (CSV 153Â kb)
DOI: 10.17632/tnrcsvym3k
title: Continental crustal growth processes revealed using detrital zircon petrochronology: Insights from Zealandia

description: Excel files (Datasets s01-s04) containing analytical data.
DOI: 10.6084/m9.figshare.25377313.v2
title: Supplementary Table1 metadata os for pd

description: metadata for RNA-seq data used for the study of "A systematic exploration of unexploited genes"
DOI: 10.6084/m9.figshare.25533367.v18
title: Coastal oceanographic connectivity at global scale: A dataset of pairwise probabilities and travel times derived from biophysical modeling

description: The dataset encompasses two components: (1) a GeoPackage file (referencePolygons.gpkg) designed for geographic information systems (GIS), containing the spatial distribution of the hexagon-shaped coastal sites, each with a unique identifier (id), and (2) a comma-separated values compressed file (oceanographicConnectivity.csv.zip) containing a matrix detailing the realized connections between pairs of sites. This matrix includes information on the source site (id), sink site (id), date of particle release (day, month, year), and the corresponding travel time expressed in days.Users have two primary options for utilizing the dataset: they can either work directly with the geospatial vector for GIS, paired with the corresponding matrix of realized connections, to retrieve pairwise connectivity estimates between coastal sites globally, or they can use the coastalNet R package for streamlined access and analysis.For users opting to work within a GIS environment, the geospatial vector file contains the spatial distribution of the coastal hexagons, each identified by a unique ID. By identifying the source and sink sites of interest within the spatial data, users can retrieve the corresponding hexagon IDs. These IDs can then be cross-referenced with the matrix of realized connectivity events, which includes information on particle release date, source ID, sink ID, and travel time. This allows users to easily extract the specific connectivity events between selected sites, providing a flexible and detailed approach to analyzing connectivity patterns directly within GIS.For users opting to work within R, the coastalNet package can facilitate the use of the provided oceanographic connectivity estimates. It offers a comprehensive suite of functions for accessing, analyzing, and visualizing connectivity data. Check https://github.com/jorgeassis/coastalNet for additional information.
DOI: 10.17632/cjr2764jhv
title: Validation of the Hungarian Passion Scale

description: We validate the Passion Scale in 729 Hungarian adults aged 18-78, comprising both physically active and inactive individuals, with 68% being female. Confirmatory Factor Analysis confirms the scale's unidimensional structure in the Hungarian context (PS-8-HU), displaying strong model fit (CFI=.98, TLI=.97, RMSEA [90% CI] =.08 [.067, .097], SRMR=.02). No notable gender differences were found, indicating applicability across sexes. Nonetheless, metric invariance was observed in the physically active/non-active group comparison. Internal consistency of PS-8-HU was high at .93, with an average variance extracted of .63 and an average inter-item correlation of .62. Test-retest reliability yielded a robust coefficient of .77. Furthermore, PS-8-HU exhibited favorable concurrent and construct validities, supported by item statistics revealing high homogeneity and satisfactory discriminant validity. Overall, PS-8-HU demonstrates robust psychometric properties.
DOI: 10.17632/nybftpzx9n
title: Core components of the nuclear pore bind distinct states of chromatin and contribute to Polycomb repression Gozalo; Duke et al.

description: Abstract: Interactions between the genome and the nuclear pore complex (NPC) have been implicated in multiple gene regulatory processes, but the underlying logic of these interactions remains poorly defined. Here, we report high-resolution chromatin binding maps of two core components of the NPC, Nup107 and Nup93, in Drosophila cells. Our investigation uncovered differential binding of these NPC subunits, where Nup107 preferentially targets active genes while Nup93 associates primarily with Polycomb-silenced regions. Comparison to Lamin-associated domains (LADs) revealed that NPC binding sites can be found within LADs, demonstrating a linear binding of the genome along the nuclear envelope. Importantly, we identified a functional role of Nup93 in silencing of Polycomb target genes and in spatial folding of Polycomb domains. Our findings lend to a model where different nuclear pores bind different types of chromatin via interactions with specific NPC sub-complexes, and a subset of Polycomb domains is stabilized by interactions with Nup93.
DOI: 10.6084/m9.figshare.12269534.v1
title: Section_2.zip

description: The data and codes used to reproduce Figures and Tables for Result Section 2: ScIGANs enables the identification of cellular states of the same cell type
DOI: 10.6084/m9.figshare.3553482.v1
title: Appendix D. Temporal variability of experimental phytoplankton communities across all treatment combinations as illustrated by coefficient of variation in chlorophyll α concentrations.

description: Temporal variability of experimental phytoplankton communities across all treatment combinations as illustrated by coefficient of variation in chlorophyll α concentrations.
DOI: 10.6084/m9.figshare.8276240.v1
title: NHS BSA FOI Response for Methotrexate

description: This is a response by NHS Business Services Authority to a Freedom of Information request. It can also be found on their website at https://apps.nhsbsa.nhs.uk/FOI/foiRequestDetail.do?bo_id=7951
DOI: 10.17632/scnxzhgj83
title: Meenal-Airwriting_Devanagari_English_numeral_dataset

description: The real-time air-writing multilingual datasets are widely used for several purposes, such as handwriting character or numeral pattern recognition. The air-writing systems are commonly used in operation theatres, online education systems, banking sectors, reservation counters, etc. However, the air-written numeral datasets are less for Devanagari and English languages needed for detecting patterns. Therefore, the present article introduces novel datasets written in the air for Devanagari and English. In addition, this article proposes a systematic novel strategy to collect the air-written multilingual numeral dataset from 100 individuals ranging in 20-40 age groups. The Devanagari and English 0-9 digits were ten times written in the air by every individual resulting in 10000 images for each language. Thus, 20000 images were generated and stored in the databases. The proposed dataset is freely available and could be a good resource for pattern recognition research.
DOI: 10.6084/m9.figshare.13530554.v1
title: Dataset

description: This data set comprises data with the ground reaction forces (with a dual force platform setup) of subjects standing still for 60 s in different conditions where vision and the standing surface were manipulated. Twenty-five subjects with Parkinson's disease were evaluated.