cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5705209
title: 360° polarization control of terahertz spintronic emitters using uniaxial FeCo/TbCo2/FeCo trilayers

description: The attached files contain raw data of terahertz spintronic emitters (STE) measured with terahertz time-domain spectroscopy (THz-TDS) and vibrating sample magnetometry (VSM). The file name indicates what was measured and the individual column names in the file describe the measured quantities. STE_comparison_reflection.csv provides a comparison of the performance of the proposed spintronic emitter integrated on various substrates in a reflection configuration of THz-TDS. STE_comparison_transmission.csv compares the developed spintronic emitter with a reference sample in a transmission configuration. The data files starting with 'VSM_magnetization_' contain VSM measurements of orthogonal magnetization vectors for FeCo, TbCo2, and the proposed trilayer for both easy (EA) and hard axes (HA). The magnetic hysteresis of the spintronic emitter is shown in the files VSM_hysteresis_STE.csv, TDS_hysteresis_mx_STE.csv, and TDS_hysteresis_my_STE.csv obtained using THz-TDS and VSM measurement techniques. The file TDS_polarization_rotation.csv demonstrates magnetically controlled polarization rotation of terahertz waveforms. The last file, TDS_quartz_analysis.csv, involves an application example of using a spintronic emitter for terahertz spectroscopy in quartz analysis.
DOI: 10.5281/zenodo.4454600
title: Dataset related to article "Post-biopsy cell-free DNA from blood: an open window on primary prostate cancer genetics and biology"

description: This record contains data related to article "Post-biopsy cell-free DNA from blood: an open window on primary prostate cancer genetics and biology". Circulating cell-free DNA (ccfDNA), released from normal and cancerous cells, is a promising biomarker for cancer detection as in neoplastic patients it is enriched in tumor-derived DNA (ctDNA). ctDNA contains cancer-specific mutations and epigenetic modifications, which can have diagnostic/prognostic value. However, in primary tumors, and in particular in localized prostate cancer (PCa), the fraction of ctDNA is very low and conventional strategies to study ccfDNA are unsuccessful. Here we demonstrate that prostate biopsy, by causing multiple injuries to the organ, leads to a significant increase in plasma concentration of ccfDNA (P&lt;0.0024) in primary PCa patients. By calculating the minor allele fraction at patient-specific somatic mutations pre- and post-biopsy, we show that ctDNA is significantly enriched (from 3.9 to 164 fold) after biopsy, representing a transient “molecular window” to access and analyze ctDNA. Moreover, we show that newly released ccfDNA contains a larger fraction of di-, tri- and multi-nucleosome associated DNA fragments. This feature could be exploited to further enrich prostate-derived ccfDNA and to analyze epigenetic markers. Our data represent a proof-of-concept that liquid tumor profiling from peripheral blood performed just after the biopsy procedure can open a “valuable molecular metastatic window” giving access to the tumor genetic asset, thus providing an opportunity for early cancer detection and individual genomic profiling in the view of PCa precision medicine.
DOI: 10.5281/zenodo.4454599
title: Dataset related to article "Post-biopsy cell-free DNA from blood: an open window on primary prostate cancer genetics and biology"

description: This record contains data related to article "Post-biopsy cell-free DNA from blood: an open window on primary prostate cancer genetics and biology". Circulating cell-free DNA (ccfDNA), released from normal and cancerous cells, is a promising biomarker for cancer detection as in neoplastic patients it is enriched in tumor-derived DNA (ctDNA). ctDNA contains cancer-specific mutations and epigenetic modifications, which can have diagnostic/prognostic value. However, in primary tumors, and in particular in localized prostate cancer (PCa), the fraction of ctDNA is very low and conventional strategies to study ccfDNA are unsuccessful. Here we demonstrate that prostate biopsy, by causing multiple injuries to the organ, leads to a significant increase in plasma concentration of ccfDNA (P&lt;0.0024) in primary PCa patients. By calculating the minor allele fraction at patient-specific somatic mutations pre- and post-biopsy, we show that ctDNA is significantly enriched (from 3.9 to 164 fold) after biopsy, representing a transient “molecular window” to access and analyze ctDNA. Moreover, we show that newly released ccfDNA contains a larger fraction of di-, tri- and multi-nucleosome associated DNA fragments. This feature could be exploited to further enrich prostate-derived ccfDNA and to analyze epigenetic markers. Our data represent a proof-of-concept that liquid tumor profiling from peripheral blood performed just after the biopsy procedure can open a “valuable molecular metastatic window” giving access to the tumor genetic asset, thus providing an opportunity for early cancer detection and individual genomic profiling in the view of PCa precision medicine.
DOI: 10.6084/m9.figshare.17099291.v1
title: Curvilinear velocity of common carp spermatozoa activated in the presence of ovarian fluid

description: The data represent the motility traits (curvilinear velocity) of common carp (<i>Cyprinus carpio</i>) spermatozoa in various activating solutions: ovarian fluid, its dilutions and molecular weight fractions, water and salines with different osmolarity and calcium ion content. Video records of motile cells were analyzed using ImageJ software and the following plugins: CASA and CASA modified for multiple analyses. The assessment of motility parameters in different activation media was conducted in triplicate for 10 males in water, dilutions of ovarian fluid and NaCl isotonic saline, and 3 males in MWCO fractions of ovarian fluid.
DOI: 10.6084/m9.figshare.17099291
title: Curvilinear velocity of common carp spermatozoa activated in the presence of ovarian fluid

description: The data represent the motility traits (curvilinear velocity) of common carp (<i>Cyprinus carpio</i>) spermatozoa in various activating solutions: ovarian fluid, its dilutions and molecular weight fractions, water and salines with different osmolarity and calcium ion content. Video records of motile cells were analyzed using ImageJ software and the following plugins: CASA and CASA modified for multiple analyses. The assessment of motility parameters in different activation media was conducted in triplicate for 10 males in water, dilutions of ovarian fluid and NaCl isotonic saline, and 3 males in MWCO fractions of ovarian fluid.
DOI: 10.5281/zenodo.5742851
title: Fully reversible magnetoelectric voltage controlled THz polarization rotation in magnetostrictive spintronic emitters on PMN-PT

description: The files include experimental data to demonstrate magneto-electric control of terahertz polarization of spintronic emitters. The files called "Vertical E-field amplitude" and "Horizontal E-field amplitude" describe the terahertz wave rotation for orthogonal polarizations measured for different values of applied voltage. The files "E-field peak rotation" show the control of polarization at the peak of the terahertz signal and differs by magnetic field bias (A/m). The measurement of the strain creating the magnetoelestic anisotropy can be found in the file "pmn-pt-strain". Files "Hysteresis - STEmulti-PMN-PT" contain magneto-hysteresis loops for easy (EA) and hard axis (HA).
DOI: 10.5281/zenodo.5742850
title: Fully reversible magnetoelectric voltage controlled THz polarization rotation in magnetostrictive spintronic emitters on PMN-PT

description: The files include experimental data to demonstrate magneto-electric control of terahertz polarization of spintronic emitters. The files called "Vertical E-field amplitude" and "Horizontal E-field amplitude" describe the terahertz wave rotation for orthogonal polarizations measured for different values of applied voltage. The files "E-field peak rotation" show the control of polarization at the peak of the terahertz signal and differs by magnetic field bias (A/m). The measurement of the strain creating the magnetoelestic anisotropy can be found in the file "pmn-pt-strain". Files "Hysteresis - STEmulti-PMN-PT" contain magneto-hysteresis loops for easy (EA) and hard axis (HA).
DOI: 10.6084/m9.figshare.14449957
title: Spatio-temporal variability of chlorophyll-<i>a</i> in response to coastal upwelling and mesoscale eddies in the South Eastern Arabian Sea

description: The influence of mesoscale dynamics on variability of phytoplankton biomass in terms of chlorophyll<i>-a</i> (chl<i>-a</i>) concentration was studied in the coastal waters of the South Eastern Arabian Sea (SEAS) using long-term satellite data. Satellite-derived chl<i>-a</i>, sea level anomaly, sea surface temperature, and sea surface wind data for the period 1998–2016 were compiled from various sources and analysed to investigate the chl<i>-a</i> variability associated with coastal upwelling and mesoscale eddies. The Empirical Orthogonal Function and Morlet wavelet analyses were performed to estimate the quantitative variability and the result showed strong seasonal and interannual modulation in chl<i>-a</i> concentration and associated environmental variables. The Okubo–Weiss criterion was applied for the identification of mesoscale eddies. The results indicated the presence of cyclonic (cold core) eddies during the summer monsoon season (June–September). The wind-induced upwelling and the cyclonic eddies were most intense during the summer monsoon season, causing higher values of chl<i>-a</i> compared with other season. It is revealed that the variability of chl<i>-a</i>, which might be attributed to seasonal and interannual differences in the surface and sub-surface nutrients, is caused either by coastal upwelling or cyclonic eddies. In particular, the wind-induced upwelling strongly controls the spatial and temporal variability of chl<i>-a</i> compared with mesoscale eddies along the SEAS. The regression model we adopted points out the dominant role played by the wind and its forcing bring about variability in chl-<i>a</i>. The occurrence of extreme climatic events such as El Niño, La Niña and Indian Ocean Dipole (IOD) was noticed during the study period and particularly taken into account to understand the interannual fluctuations in chl-<i>a</i> and associated environmental variables. The relative variability in chl-<i>a</i> concentration was prominent during strong El Niño, La Niña, and IOD. We have attempted to determine the relationship between chl<i>-a</i> with coastal upwelling and mesoscale eddies, the overall importance of such physical forcings, and their influence on bio-production in the SEAS.
DOI: 10.6084/m9.figshare.14449957.v2
title: Spatio-temporal variability of chlorophyll-<i>a</i> in response to coastal upwelling and mesoscale eddies in the South Eastern Arabian Sea

description: The influence of mesoscale dynamics on variability of phytoplankton biomass in terms of chlorophyll<i>-a</i> (chl<i>-a</i>) concentration was studied in the coastal waters of the South Eastern Arabian Sea (SEAS) using long-term satellite data. Satellite-derived chl<i>-a</i>, sea level anomaly, sea surface temperature, and sea surface wind data for the period 1998–2016 were compiled from various sources and analysed to investigate the chl<i>-a</i> variability associated with coastal upwelling and mesoscale eddies. The Empirical Orthogonal Function and Morlet wavelet analyses were performed to estimate the quantitative variability and the result showed strong seasonal and interannual modulation in chl<i>-a</i> concentration and associated environmental variables. The Okubo–Weiss criterion was applied for the identification of mesoscale eddies. The results indicated the presence of cyclonic (cold core) eddies during the summer monsoon season (June–September). The wind-induced upwelling and the cyclonic eddies were most intense during the summer monsoon season, causing higher values of chl<i>-a</i> compared with other season. It is revealed that the variability of chl<i>-a</i>, which might be attributed to seasonal and interannual differences in the surface and sub-surface nutrients, is caused either by coastal upwelling or cyclonic eddies. In particular, the wind-induced upwelling strongly controls the spatial and temporal variability of chl<i>-a</i> compared with mesoscale eddies along the SEAS. The regression model we adopted points out the dominant role played by the wind and its forcing bring about variability in chl-<i>a</i>. The occurrence of extreme climatic events such as El Niño, La Niña and Indian Ocean Dipole (IOD) was noticed during the study period and particularly taken into account to understand the interannual fluctuations in chl-<i>a</i> and associated environmental variables. The relative variability in chl-<i>a</i> concentration was prominent during strong El Niño, La Niña, and IOD. We have attempted to determine the relationship between chl<i>-a</i> with coastal upwelling and mesoscale eddies, the overall importance of such physical forcings, and their influence on bio-production in the SEAS.
DOI: 10.6084/m9.figshare.14449957.v1
title: Spatio-temporal variability of chlorophyll-<i>a</i> in response to coastal upwelling and mesoscale eddies in the South Eastern Arabian Sea

description: The influence of mesoscale dynamics on variability of phytoplankton biomass in terms of chlorophyll<i>-a</i> (chl<i>-a</i>) concentration was studied in the coastal waters of the South Eastern Arabian Sea (SEAS) using long-term satellite data. Satellite-derived chl<i>-a</i>, sea level anomaly, sea surface temperature, and sea surface wind data for the period 1998–2016 were compiled from various sources and analysed to investigate the chl<i>-a</i> variability associated with coastal upwelling and mesoscale eddies. The Empirical Orthogonal Function and Morlet wavelet analyses were performed to estimate the quantitative variability and the result showed strong seasonal and interannual modulation in chl<i>-a</i> concentration and associated environmental variables. The Okubo–Weiss criterion was applied for the identification of mesoscale eddies. The results indicated the presence of cyclonic (cold core) eddies during the summer monsoon season (June–September). The wind-induced upwelling and the cyclonic eddies were most intense during the summer monsoon season, causing higher values of chl<i>-a</i> compared with other season. It is revealed that the variability of chl<i>-a</i>, which might be attributed to seasonal and interannual differences in the surface and sub-surface nutrients, is caused either by coastal upwelling or cyclonic eddies. In particular, the wind-induced upwelling strongly controls the spatial and temporal variability of chl<i>-a</i> compared with mesoscale eddies along the SEAS. The regression model we adopted points out the dominant role played by the wind and its forcing bring about variability in chl-<i>a</i>. The occurrence of extreme climatic events such as El Niño, La Niña and Indian Ocean Dipole (IOD) was noticed during the study period and particularly taken into account to understand the interannual fluctuations in chl-<i>a</i> and associated environmental variables. The relative variability in chl-<i>a</i> concentration was prominent during strong El Niño, La Niña, and IOD. We have attempted to determine the relationship between chl<i>-a</i> with coastal upwelling and mesoscale eddies, the overall importance of such physical forcings, and their influence on bio-production in the SEAS.
DOI: 10.5281/zenodo.5743308
title: msd-errors - Data for the LLZO figure

description: Data for the figure showing the diffusion and Arrhenius plots for a short simulation of LLZO. <br><br>Created using showyourwork from this GitHub repo.
DOI: 10.5281/zenodo.5743311
title: msd-errors - Data for AgCrSe2 figures

description: Data for the figures Results of the analysis of AgCrSe2 systems by kinisi at a series of temperatures.<br><br>Created using showyourwork from this GitHub repo.
DOI: 10.5281/zenodo.5743312
title: msd-errors - Data for variance and covariance figure

description: Data for a figure that presents the variance and covariance for a true random walk. There is a comparison shown between the numerical result from 1024 unique random walks and the analysis, by kinisi, of the same 1024 random walks.<br><br>Created using showyourwork from this GitHub repo.
DOI: 10.5281/zenodo.5675439
title: msd-errors - Data for variance and covariance figure

description: Data for a figure that presents the variance and covariance for a true random walk. There is a comparison shown between the numerical result from 1024 unique random walks and the analysis, by kinisi, of the same 1024 random walks.<br><br>Created using showyourwork from this GitHub repo.
DOI: 10.5281/zenodo.5743318
title: Data used for manuscript "The coordination of green-brown food webs and their disruption by anthropogenic nutrient inputs"

description: Data used for manuscript "The coordination of green-brown food webs and their disruption by anthropogenic nutrient inputs". This includes estimations of various properties of food webs, such as stocks of compartments, fluxes between compartments, and conversion efficiencies.
DOI: 10.5281/zenodo.5743317
title: Data used for manuscript "The coordination of green-brown food webs and their disruption by anthropogenic nutrient inputs"

description: Data used for manuscript "The coordination of green-brown food webs and their disruption by anthropogenic nutrient inputs". This includes estimations of various properties of food webs, such as stocks of compartments, fluxes between compartments, and conversion efficiencies.
DOI: 10.6084/m9.figshare.14854170
title: Simulated data: Bio-inspired multimodal imaging in reduced visibility

description: Two spectral scenes, as depicted by Scene 1 & 2 in "Bio-inspired multimodal imaging in reduced visibility".
DOI: 10.6084/m9.figshare.14854170.v2
title: Simulated data: Bio-inspired multimodal imaging in reduced visibility

description: Two spectral scenes, as depicted by Scene 1 & 2 in "Bio-inspired multimodal imaging in reduced visibility".
DOI: 10.6084/m9.figshare.14854170.v1
title: Bio-inspired multimodal imaging in reduced visibility

description: Two spectral scenes, as depicted by Scene 1 & 2 in "Bio-inspired multimodal imaging in reduced visibility".
DOI: 10.5281/zenodo.5743314
title: Platytropius siamensis SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5743313
title: Platytropius siamensis SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5743287
title: Metadata of "Solvent-free Reactions for the Synthesis of Indolenine-based Squaraines and Croconaines: Comparison of Thermal Heating, Mechanochemical Milling, and IR Irradiation"

description: Metadata of "Solvent-free Reactions for the Synthesis of Indolenine-based Squaraines and Croconaines: Comparison of Thermal Heating, Mechanochemical Milling, and IR Irradiation"
DOI: 10.5281/zenodo.5743286
title: Metadata of "Solvent-free Reactions for the Synthesis of Indolenine-based Squaraines and Croconaines: Comparison of Thermal Heating, Mechanochemical Milling, and IR Irradiation"

description: Metadata of "Solvent-free Reactions for the Synthesis of Indolenine-based Squaraines and Croconaines: Comparison of Thermal Heating, Mechanochemical Milling, and IR Irradiation"
DOI: 10.17028/rd.lboro.17099381
title: Supplementary Information Files for Snacktivity™ to promote physical activity: a qualitative study

description: Supplementary Information Files for Snacktivity™ to promote physical activity: a qualitative study<br>Background Adults should achieve a minimum of 150 min of moderate-to-vigorous intensity physical activity per week, but many people do not achieve this. Changes to international guidance have removed the requirement to complete physical activity in bouts of at least 10 min. Snacktivity is a novel and complementary approach that could motivate people to be physically active. It focuses on promoting shorter (2–5 min) and more frequent bouts, or ‘snacks’ of physical activity throughout the day. It is not known whether promoting physical activity in shorter bouts is acceptable to the public, or whether it likely to translate into health behaviour change. <br>Methods As part of a larger research programme, this study explored the merits of using small bouts of physical activity to help the public become physically active (the Snacktivity™ programme). Thirty-one inactive adults used the approach for fve days then participated in semi- structured interviews about their experiences. The data were analysed using the Framework approach. <br>Results Whilst participants highlighted some potential barriers to implementation, they expressed the ease with which Snacktivity could be achieved, which gave them a new awareness of opportunities to do more physical activity throughout the day. Participants raised the importance of habit formation to achieve regular small bouts of physical activity. <br>Conclusions Findings demonstrated that participants liked the Snacktivity concept and viewed it as a motivating approach. Guidance about physical activity must lead to advice that has the best chance of preserving and promoting health and Snacktivity has potential to meet this ambition.<br>
DOI: 10.17028/rd.lboro.17099381.v1
title: Supplementary Information Files for Snacktivity™ to promote physical activity: a qualitative study

description: Supplementary Information Files for Snacktivity™ to promote physical activity: a qualitative study<br>Background Adults should achieve a minimum of 150 min of moderate-to-vigorous intensity physical activity per week, but many people do not achieve this. Changes to international guidance have removed the requirement to complete physical activity in bouts of at least 10 min. Snacktivity is a novel and complementary approach that could motivate people to be physically active. It focuses on promoting shorter (2–5 min) and more frequent bouts, or ‘snacks’ of physical activity throughout the day. It is not known whether promoting physical activity in shorter bouts is acceptable to the public, or whether it likely to translate into health behaviour change. <br>Methods As part of a larger research programme, this study explored the merits of using small bouts of physical activity to help the public become physically active (the Snacktivity™ programme). Thirty-one inactive adults used the approach for fve days then participated in semi- structured interviews about their experiences. The data were analysed using the Framework approach. <br>Results Whilst participants highlighted some potential barriers to implementation, they expressed the ease with which Snacktivity could be achieved, which gave them a new awareness of opportunities to do more physical activity throughout the day. Participants raised the importance of habit formation to achieve regular small bouts of physical activity. <br>Conclusions Findings demonstrated that participants liked the Snacktivity concept and viewed it as a motivating approach. Guidance about physical activity must lead to advice that has the best chance of preserving and promoting health and Snacktivity has potential to meet this ambition.<br>
DOI: 10.6084/m9.figshare.13900214.v1
title: Interferon-alpha exerts proinflammatory properties in experimental radiation-induced esophagitis: possible involvement of plasmacytoid dendritic cells.

description: Interferon-alpha exerts proinflammatory properties in experimental radiation-induced esophagitis: possible involvement of plasmacytoid dendritic cells.
DOI: 10.5281/zenodo.5743319
title: msd-errors - Data for scaling figures

description: Data for a figure that shows the scaling of uncertainty as a function of simulation length and number of atoms and step size, for both true and anitcorrelated random walks. This compares the kinisi approach (on just 32 unique walks) with the numerical values from (1024 unique walks). <br><br>Created using showyourwork from this GitHub repo.