DOI: 10.5281/zenodo.17969322
title: Nuclear genome annotation for Carya glabra (pignut hickory; Juglandaceae)

description: File name
Description


Carya_glabra_hapA-genome-v1.0.a1.ncbi.fa.gz
Carya glabra haplotype A assembly


Carya_glabra_hapB-genome-v1.0.a1.ncbi.fa.gz
Carya glabra haplotype B assembly


Carya_glabra_hapC-genome-v1.0.a1.ncbi.fa.gz
Carya glabra haplotype C assembly


Carya_glabra_hapD-genome-v1.0.a1.ncbi.fa.gz
Carya glabra haplotype D assembly


Carya.glabra_hapA_braker_final2_sup50_renamed.gff
GFF file of annotated genes in Carya glabra haplotype A


Carya.glabra_hapA_braker_final2_sup50_renamed_longIso.gff
GFF file of annotated genes (longest isoforms only) in Carya glabra haplotype A


Carya.glabra_hapA_braker_final2_renamed_cds.fa.gz
CDS sequences of annotated genes in Carya glabra haplotype A


Carya.glabra_hapA_braker_final2_renamed_cds_longIso.fa.gz
CDS sequences of annotated genes (longest isoforms only) in Carya glabra haplotype A


Carya.glabra_hapA_braker_final2_renamed_protein.fa.gz
Protein sequences of annotated genes in Carya glabra haplotype A


Carya.glabra_hapA_braker_final2_renamed_protein_longIso.fa.gz
Protein sequences of annotated genes (longest isoforms only) in Carya glabra haplotype A


Carya.glabra_hapB_braker_final2_sup50_renamed.gff
GFF file of annotated genes in Carya glabra haplotype B


Carya.glabra_hapB_braker_final2_sup50_renamed_longIso.gff
GFF file of annotated genes (longest isoforms only) in Carya glabra haplotype B


Carya.glabra_hapB_braker_final2_renamed_cds.fa.gz
CDS sequences of annotated genes in Carya glabra haplotype B


Carya.glabra_hapB_braker_final2_renamed_cds_longIso.fa.gz
CDS sequences of annotated genes (longest isoforms only) in Carya glabra haplotype B


Carya.glabra_hapB_braker_final2_renamed_protein.fa.gz
Protein sequences of annotated genes in Carya glabra haplotype B


Carya.glabra_hapB_braker_final2_renamed_protein_longIso.fa.gz
Protein sequences of annotated genes (longest isoforms only) in Carya glabra haplotype B


Carya.glabra_hapC_braker_final2_sup50_renamed.gff
GFF file of annotated genes in Carya glabra haplotype C


Carya.glabra_hapC_braker_final2_sup50_renamed_longIso.gff
GFF file of annotated genes (longest isoforms only) in Carya glabra haplotype C


Carya.glabra_hapC_braker_final2_renamed_cds.fa.gz
CDS sequences of annotated genes in Carya glabra haplotype C


Carya.glabra_hapC_braker_final2_renamed_cds_longIso.fa.gz
CDS sequences of annotated genes (longest isoforms only) in Carya glabra haplotype C


Carya.glabra_hapC_braker_final2_renamed_protein.fa.gz
Protein sequences of annotated genes in Carya glabra haplotype C


Carya.glabra_hapC_braker_final2_renamed_protein_longIso.fa.gz
Protein sequences of annotated genes (longest isoforms only) in Carya glabra haplotype C


Carya.glabra_hapD_braker_final2_sup50_renamed.gff
GFF file of annotated genes in Carya glabra haplotype D


Carya.glabra_hapD_braker_final2_sup50_renamed_longIso.gff
GFF file of annotated genes (longest isoforms only) in Carya glabra haplotype D


Carya.glabra_hapD_braker_final2_renamed_cds.fa.gz
CDS sequences of annotated genes in Carya glabra haplotype D


Carya.glabra_hapD_braker_final2_renamed_cds_longIso.fa.gz
CDS sequences of annotated genes (longest isoforms only) in Carya glabra haplotype D


Carya.glabra_hapD_braker_final2_renamed_protein.fa.gz
Protein sequences of annotated genes in Carya glabra haplotype D


Carya.glabra_hapD_braker_final2_renamed_protein_longIso.fa.gz
Protein sequences of annotated genes (longest isoforms only) in Carya glabra haplotype D


Carya_glabra_hapA-genome-v1.0.a1.fa.mod.EDTA.TEanno.gff3
Transposable element (TE) annotation in Carya glabra haplotype A (EDTA)


Carya_glabra_hapB-genome-v1.0.a1.fa.mod.EDTA.TEanno.gff3
Transposable element (TE) annotation in Carya glabra haplotype B (EDTA)


Carya_glabra_hapC-genome-v1.0.a1.fa.mod.EDTA.TEanno.gff3
Transposable element (TE) annotation in Carya glabra haplotype C (EDTA)


Carya_glabra_hapD-genome-v1.0.a1.fa.mod.EDTA.TEanno.gff3
Transposable element (TE) annotation in Carya glabra haplotype D (EDTA)


Carya.glabra_hapA_transcripts_gf_exp7998.txt
Carya glabra haplotype A transcripts with their associated gene family (TRAPID 2.0)


Carya.glabra_hapA_transcripts_go_exp7998.txt
Carya glabra haplotype A transcripts with associated GO terms (TRAPID 2.0)


Carya.glabra_hapA_transcripts_interpro_exp7998.txt
Carya glabra haplotype A transcripts with associated protein domains (TRAPID 2.0)


Carya.glabra_hapB_transcripts_gf_exp8000.txt
Carya glabra haplotype B transcripts with their associated gene family (TRAPID 2.0)


Carya.glabra_hapB_transcripts_go_exp8000.txt
Carya glabra haplotype B transcripts with associated GO terms (TRAPID 2.0)


Carya.glabra_hapB_transcripts_interpro_exp8000.txt
Carya glabra haplotype B transcripts with associated protein domains (TRAPID 2.0)


Carya.glabra_hapC_transcripts_gf_exp8001.txt
Carya glabra haplotype C transcripts with their associated gene family (TRAPID 2.0)


Carya.glabra_hapC_transcripts_go_exp8001.txt
Carya glabra haplotype C transcripts with associated GO terms (TRAPID 2.0)


Carya.glabra_hapC_transcripts_interpro_exp8001.txt
Carya glabra haplotype C transcripts with associated protein domains (TRAPID 2.0)


Carya.glabra_hapD_transcripts_gf_exp8002.txt
Carya glabra haplotype D transcripts with their associated gene family (TRAPID 2.0)


Carya.glabra_hapD_transcripts_go_exp8002.txt
Carya glabra haplotype D transcripts with associated GO terms (TRAPID 2.0)


Carya.glabra_hapD_transcripts_interpro_exp8002.txt
Carya glabra haplotype D transcripts with associated protein domains (TRAPID 2.0)


Carya.glabra_hapA_R-genes.xlsx
 Putative plant disease resistance genes (R genes) in Carya glabra haplotype A


Carya.glabra_hapB_R-genes.xlsx
 Putative plant disease resistance genes (R genes) in Carya glabra haplotype B


Carya.glabra_hapC_R-genes.xlsx
 Putative plant disease resistance genes (R genes) in Carya glabra haplotype C


Carya.glabra_hapD_R-genes.xlsx
 Putative plant disease resistance genes (R genes) in Carya glabra haplotype D


Carya.glabra_chloroplast_genome_updated_20251113.fasta
Carya glabra chloroplast genome


Carya.glabra_mitogenome_MIT_1_Oatk.fasta
Carya glabra mitochondrial genome mtChr1


Carya.glabra_mitogenome_MIT_2_Oatk_updated.fasta
Carya glabra mitochondrial genome mtChr2