cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5126329.v1
title: Supplementary Material for: Differential Placental Gene Expression in Term Pregnancies Affected by Fetal Growth Restriction and Macrosomia

description: <b><i>Introduction:</i></b> Extremes of fetal growth are associated with increased perinatal mortality and morbidity and a higher prevalence of cardiovascular disease, obesity and diabetes in later life. We aimed to identify changes in placental gene expression in pregnancies with evidence of growth dysfunction and candidate genes that may be used to identify abnormal patterns of growth prior to delivery. <b><i>Methods:</i></b> Growth-restricted (n = 4), macrosomic (n = 6) and normal term (n = 5) placentas were selected from a banked series (n = 200) collected immediately after caesarean section. RNA was extracted prior to microarray analysis using Affymetrix HG-U219 arrays to determine variation in gene expression. Genes of interest were confirmed using qRT-PCR. <b><i>Results:</i></b> 338 genes in the growth-restricted and 41 genes in the macrosomic group were identified to be significantly dysregulated (&gt;2-fold change; p &lt; 0.05). <i>CPXM2</i> and <i>CLDN1</i> were upregulated and <i>TXNDC5</i> and <i>LRP2</i> downregulated in fetal growth restriction. In macrosomia, <i>PHLDB2</i> and <i>CLDN1</i> were upregulated and <i>LEP</i> and <i>GCH1</i> were downregulated. <b><i>Discussion:</i></b> Dysfunctional growth is associated with differential placental gene expression and affects genes with a whole spectrum of developmental and cellular functions. Better elucidation of these pathways may allow the development of biomarkers to identify growth abnormalities and effective prenatal intervention.
DOI: 10.17028/rd.lboro.6106427.v1
title: Interview Protocol: Workers. Thriving at 55+ Project

description: These are interview guides (protocols) for data collection for the project "Thriving in the workplace - supporting people at the age of 55 years and over in satisfying and productive work".The collected data has already been used in two published papers:https://doi.org/10.1093/workar/waw011https://doi.org/10.1093/workar/wax027<br><br>
DOI: 10.6084/m9.figshare.23672355.v3
title: Data for "Matching the scales of planning and environmental risk: An evaluation of Community Wildfire Protection Plans in the western U.S."

description: Data for "Matching the scales of planning and environmental risk: An evaluation of Community Wildfire Protection Plans in the western U.S."
DOI: 10.6084/m9.figshare.26311564.v1
title: Data

description: SNP datasets relating to various diseases
DOI: 10.6084/m9.figshare.25118498.v1
title: Supplementary Material for: Preservation of Peritoneal Dialysis in Liver Surgery with Robotic Technique: A Case Report

description: <b><i>Introduction:</i></b> During the last year, the features of peritoneal dialysis patients have changed, and the cases in which there is a need to perform abdominal surgery are growing. Reports of abdominal surgery in patients who are able to continue peritoneal dialysis are increasing. The minimally invasive techniques represent the preferred and safest approach. Such techniques are associated with reduced hospitalization time, less invasiveness, peritoneal integrity preservation, and reduced intra-abdominal inflammation due to regenerative processes. <b><i>Case Presentation:</i></b> In this case report, we present a case of major abdominal surgery, in the form of hepatic metastasectomy, performed with the robotic-assisted technique, which allowed catheter and intracorporeal dialysis preservation. The patient showed a strong determination to continue with peritoneal dialysis as long as possible. During the switch to hemodialysis, he performed prophylactic antibiotic therapy to preserve the peritoneal catheter, and the patient was instructed to have a reduced water intake, avoiding excessive ultrafiltration potentially deteriorating the residual renal function. Special care was also taken to avoid any nephrotoxic drug. The peritoneal treatment was restarted after 3 weeks with low volume exchange for the first 10 days, and the pre-surgery dialysis volumes were then re-established. After surgery, the patient showed adequate clearance of solutes and ultrafiltration similar to the preoperative period. The patient did not encounter any wound complications. <b><i>Conclusion:</i></b> Robotic surgery represents a further aid in peritoneal dialysis preservation after abdominal surgery. A detailed communication with the patient before performing this kind of procedure and a strong will to preserve the peritoneal method are essential.
DOI: 10.6084/m9.figshare.28824770.v1
title: Supplementary figure 1

description: Merscope label probability
DOI: 10.6084/m9.figshare.26321473.v1
title: Project Cfunction_exp1_Soil Incubation Dataset.xlsx

description: A 12-week soil incubation experiment with soil respiration (CO<sub>2</sub>-C mg/g soil) and stabilised soil carbon (% fine fraction C) data for treatments based on wheat straw that were supplemented with N, P or S to provide balanced or limiting ratios of stoichiometric C-input.
DOI: 10.6084/m9.figshare.9784961.v1
title: Subject 4

description: Data from Subject 4
DOI: 10.6084/m9.figshare.3553806.v1
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.12750585.v1
title: SEM micrographs from Particle morphology, structure and properties of nascent ultra-high molecular weight polyethylene

description: SEM micrographs of PE-140 and PE-120 at different magnifications
DOI: 10.6084/m9.figshare.14495442.v1
title: Body weight.xlsx

description: The change body weight of mice in each group
DOI: 10.17632/vvdcjtkg8k
title: Three types of company and technology datasets towards a unified graph model

description: We collect three types of publicly available datasets. 1) Company Data: Initially, we collect data on promising small and medium-sized enterprises located in Gyeonggi Province from 2019 to 2021, sourced from the Gyeonggi Open Data Portal, "Gyeonggi Data Dream." 2) Technology Keyword Data: Utilizing prompt engineering with the ChatGPT service [3], we define a set of 14 initial technology keywords. Since it is insufficient to construct a graph with only 14 initial technology keywords, we extend the keywords using a patent database. We extract core technology keyword sets through query expansion using the previously defined initial technology keyword set. 3) Patent Data: We acquire patent disclosure and registration datasets from the Patent Office's KIPRIS PLUS patent information utilization service. Finally, to construct graph data, For a total of 47,385 patent data with 727 SMEs collected as applicants, the relationship between each company and the technology keywords included in the patent data is modeled as a heterogeneous graph. It consists of two types of nodes, Company and Technology, 727 and 1957 respectively, which define three types of edges. There are Use, which indicates that a particular company uses a particular technology, Share, which means that two company share common technology in their main products respectively, and Relate, which indicates that the two technologies are used in a common patent document. We generate graph data as data objects provided by the pytorch-geometric library. For the reconstruction of this data, we converted it into a form of a Pytorch Tensor and stored it as a pickle file. This can be reproduced by "torch.load('Graph.pt')" module. Note that the original datasets were written in Korean. We converted them to English for reference: (eng) init_keywords.txt, (eng) expanded_keywords.txt, (eng) company_data.csv, and (eng) patents.csv.
DOI: 10.6084/m9.figshare.11565726.v2
title: DNA sequence of wild-type and intronic mutation human beta-globin gene

description: DNA sequence of wild-type and intronic mutation human beta-globin gene obtained from Ensembl for transcriptional regulation detail by selecting transcript HBB-201 ENST00000335295.4
DOI: 10.6084/m9.figshare.24084588.v2
title: Exploring the relationship between caffeine metabolism-related cyp1a2 rs762551 polymorphism and team sport athlete status and training adaptations

description: The effectiveness of caffeine intake on physical performance improvement varies considerably between individuals. Slow caffeine metabolizers (i.e., carriers of the <i>CYP1A2</i> rs762551 CC genotype) may not experience the positive effects of caffeine intake on aerobic, strength and cognitive performance (compared to fast/AA and intermediate/AC metabolizers). The aim of this study was twofold: (1) to compare <i>CYP1A2</i> genotype frequencies between team sport athletes and a control group, and (2) to determine the association between <i>CYP1A2</i> polymorphism and changes in physical performance in response to six weeks of training in elite basketball players. The study examined 504 individuals (320 athletes and 184 controls). A decreasing linear trend of CC genotype with increasing level of achievement in team sport athletes (sub-elite: 18.0%, elite: 8.2%, highly elite (Olympic champions): 0%; <i>p</i>=0.001 for linear trend) was observed. Furthermore, Olympic champions had a significantly higher frequency of the AC genotype compared to the control group (80.0 vs 45.1%, <i>p</i>=0.048). Statistically significant (<i>p</i>=0.048) changes were observed in Yo-Yo IRT 2 performance in basketball players with the AC genotype only. In conclusion, our findings indicate that the <i>CYP1A2</i> CC genotype is unfavorable for play in elite team sports, whereas the carriage of the AC genotype may confer an advantage in basketball.
DOI: 10.6084/m9.figshare.23266271.v1
title: Dataset-train.zip

description: model for test
DOI: 10.6084/m9.figshare.8015960.v3
title: Panel Data Analysis via Mechanistic Models

description: Panel data, also known as longitudinal data, consist of a collection of time series. Each time series, which could itself be multivariate, comprises a sequence of measurements taken on a distinct unit. Mechanistic modeling involves writing down scientifically motivated equations describing the collection of dynamic systems giving rise to the observations on each unit. A defining characteristic of panel systems is that the dynamic interaction between units should be negligible. Panel models therefore consist of a collection of independent stochastic processes, generally linked through shared parameters while also having unit-specific parameters. To give the scientist flexibility in model specification, we are motivated to develop a framework for inference on panel data permitting the consideration of arbitrary nonlinear, partially observed panel models. We build on iterated filtering techniques that provide likelihood-based inference on nonlinear partially observed Markov process models for time series data. Our methodology depends on the latent Markov process only through simulation; this plug-and-play property ensures applicability to a large class of models. We demonstrate our methodology on a toy example and two epidemiological case studies. We address inferential and computational issues arising due to the combination of model complexity and dataset size. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.12184788.v2
title: COVID19

description: model prediction of covid19
DOI: 10.15468/dl.zq9pr2
title: Occurrence Download

description: A dataset containing 23242 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Noctua pronuba Linnaeus, 1758"
 ]
}

 The dataset includes 23242 records from 141 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009367-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.21393330.v1
title: Calibration and validation of AquaCrop model for cowpea crop under water stress

description: ABSTRACT Cowpea is a legume crop cultivated in diversified production systems, under different conditions of climate, soil, cultivars and technological level. Although the crop is resistant to water stress, lack of moisture in the soil profile during its reproductive stage causes significant losses in its yield. The objective of this study was to calibrate and evaluate the AquaCrop model in the simulation of cowpea yield under water stress in two cropping seasons (rainy and dry) under no-tillage system condition. Experiments were carried out in two cropping seasons (rainy and dry) with five forms of water stress (without water stress, water suspension for 5, 10 and 15 days and rainfed cultivation), under no-tillage system. Regardless of the cowpea cropping season, water stress reduced grain yield and biomass yield, which was more pronounced in the dry season. The Aquacrop model simulated cowpea yield well for the rainy and dry seasons, with root mean square error of 16 and 9.1%, respectively. Aquacrop model showed poor performance for simulation of dry biomass production in both cropping seasons, overestimating the values obtained in the field.
DOI: 10.6084/m9.figshare.6479504.v2
title: GWAS DATA

description: This dataset included phenotype data and genetype data for our analysis. <br>
DOI: 10.17632/gmmz4426w5
title: Mass spectrometry raw files from metabolomics study of congenital and isolated growth hormone deficiency

description: ID of group and subgroup 1-20-22-38-41 to 50 (healthy control) 16-26-33-36 (IGHD on gh therapy) 4-5-11-12-23-28-35-54 (IGHD non-gh therapy)
DOI: 10.17632/s2mm5btmy5
title: DIY EMTT

description: This equipment list is a part from a manuscript entittled A Cost Effective DIY Electromechanical Tensile Test Equipment for Stretchable Sensor Reliability Assessment that is published in HardwareX. 
The asbtract of this paper is as follows: 
The growing interest of soft robotics increase the demand of stretchable sensors.The high performance of stretchable sensors depens much on the linearity, reliability and the hysteresis of the stretchable conductive materials. In some applications of conductive materials also requires a stretchable conductive materials that can maintain the cunductivity owhile sustaining large and multiple cycle of stretch and releas test. To understand the stretchable electrode quality, researcher should perform a electromechanical test. However, reseqarcher requires a high investment cost to use a profesional type of electromechanical tensile test. In this research, we proposed a novel version of Do-it- yourself (DIY) electro-mechanical tensile test (EMTT) to resolve the high investment cost problems. The DIY-EMTT is based on the arduino-nano module. We integrate the load cell, displacement sensor, motor linear stage and DIY resistance meter. Furthermore, We provide step by step to build the DIY-EMTT. We expect our DIY-EMTT can boost the development of stretchable sensor in soft robotics.
DOI: 10.6084/m9.figshare.11301998.v1
title: Study of prevalence biofilm forming bacteria and broad-spectrum antibiofilm activity as anti-quorum sensing agent of streptomyces secondary metabolites on urinary catheter infections

description: Catheter-associated urinary tract infection is caused primarily by the multidrug-resistant biofilm forming bacteria of uropathogens. Theprevention and successful treatment of infections is difficult when catheters are colonized by bacterial biofilm growth. There have beenseveral efforts utilizing biocides in catheterizations, in attempts to inhibit all possible bacterial access to catheterized urethra. Nevertheless, itis clearly the case that such approaches are usually unsuccessful in the long run. Quorum quenching represents a new approach for control ofinfection for highly resistant microorganism. Therefore, there is a pressing need to find out natural Quorum Sensing inhibition compounds toovercome the resistance of the uropathogens. This unique concept of the antimicrobial control depends on reducing the burden of virulenceand suppress the development of antibiotic resistance rather than killing the bacteria. In the present investigation, the target microorganismswere isolated from attached surface of urinary catheters which evaluated quantitatively and qualitatively using standard techniques.Altogether 100 isolates were collected. Antibiotic susceptibility assays results showed that most of the isolates were resistant to a wide rangeof beta lactam and non-beta lactam antibiotics. Results of biofilm forming on microtiter plate and sterile foley catheter reveled that theseisolates possess a high capacity for biofilm formation on the both surface at the different degrees (strong, moderate and weak formingbiofilm) and required the only a short contact time for attachment. An anti-biofilm secondary metabolites from streptomyces strain sdLiexpressed broad-spectrum antibiofilm activity possibly by interfering with their QS systems against six different species producing strongbiofilm and multi-drug resistance. The anti-biofilm of secondary metabolites strain sdLi against six species was examined on sterilized coverglasses and urinary catheter sections using light microscope and scanning electron microscopy respectively. Evidence is presented that sdListreptomyces secondary metabolites showed broad-spectrum activity to attenuate the Quorum Sensing - dependent biofilm. Theinvestigation of quorum-sensing control may lead to the development of novel antipathogenic drugs.
DOI: 10.6084/m9.figshare.20036720.v1
title: Supplementary Material for: Neurodevelopmental Outcome of Extremely Low Birth Weight Infants with Cholestasis at 12 and 24 Months

description: <b><i>Introduction:</i></b> The aims of the study were to describe the neurodevelopmental outcome of extremely low birth weight (ELBW) infants with parenteral nutrition-associated cholestasis (PNAC) and to assess whether PNAC is associated with adverse neurodevelopmental outcome. <b><i>Methods:</i></b> The study is a secondary analysis of controlled trial (June 2012–October 2017) on PNAC incidence in ELBW infants receiving two different parenteral lipid emulsions (mixed lipid emulsion containing fish oil vs. soybean oil-based). Neurodevelopmental follow-up at 12- and 24-month corrected age was compared in infants with and without PNAC. A machine learning-based regression analysis was used to assess whether PNAC was associated with adverse neurodevelopmental outcome. <b><i>Results:</i></b> For assessment of neurodevelopmental outcome (Bayley-III), 174 infants were available at 12-month (PNAC: <i>n</i> = 21; no PNAC: <i>n</i> = 153) and 164 infants at 24-month (PNAC: <i>n</i> = 20; no PNAC: <i>n</i> = 144) corrected age. The neurodevelopment of ELBW infants with PNAC was globally delayed, with significantly lower cognitive, language, and motor scores at both 12- and 24-month corrected age. Regression analyses revealed that PNAC was associated with an adverse motor outcome. <b><i>Conclusion:</i></b> ELBW infants with PNAC are at increased risk for adverse neurodevelopmental outcome.
DOI: 10.6084/m9.figshare.28761092.v1
title: Supplementary information of "<i>MYB1</i>-Mediated Regulation of Anthocyanin Biosynthesis in <i>Syringa</i> <i>reticulata</i> subsp. <i>amurensis</i> (Rupr.) P. S. Green & M. C. Chang: A Key Mechanism of White Flower Formation"

description: Sequence and primers of SrMYB1, anthocyanins in <i>Syringa reticulata</i> subsp. <i>amurensis</i>
DOI: 10.6084/m9.figshare.13078439.v1
title: Supplementary Material for: PolyADP-Ribosylation of NFATc3 and NF-κB Transcription Factors Modulate Macrophage Inflammatory Gene Expression in LPS-Induced Acute Lung Injury

description: Pulmonary macrophages play a critical role in the recognition of pathogens, initiation of host defense via inflammation, clearance of pathogens from the airways, and resolution of inflammation. Recently, we have shown a pivotal role for the nuclear factor of activated T-cell cytoplasmic member 3 (NFATc3) transcription factor in modulating pulmonary macrophage function in LPS-induced acute lung injury (ALI) pathogenesis. Although the NFATc proteins are activated primarily by calcineurin-dependent dephosphorylation, here we show that LPS induces posttranslational modification of NFATc3 by polyADP-ribose polymerase 1 (PARP-1)-mediated polyADP-ribosylation. ADP-ribosylated NFATc3 showed increased binding to iNOS and TNFα promoter DNA, thereby increasing downstream gene expression. Inhibitors of PARP-1 decreased LPS-induced NFATc3 ribosylation, target gene promoter binding, and gene expression. LPS increased NFAT luciferase reporter activity in lung macrophages and lung tissue that was inhibited by pretreatment with PARP-1 inhibitors. More importantly, pretreatment of mice with the PARP-1 inhibitor olaparib markedly decreased LPS-induced cytokines, protein extravasation in bronchoalveolar fluid, lung wet-to-dry ratios, and myeloperoxidase activity. Furthermore, PARP-1 inhibitors decreased NF-кB luciferase reporter activity and LPS-induced ALI in NF-кB reporter mice. Thus, our study demonstrates that inhibiting NFATc3 and NF-кB polyADP-ribosylation with PARP-1 inhibitors prevented LPS-induced ALI pathogenesis.
DOI: 10.6084/m9.figshare.21502089.v1
title: New mammal and bird tracks from the Lower Oligocene of the Ebro Basin (NE Spain): implications for the Palaeogene ichnological record

description: Supplementary material (3D models) of some specimens of the publication "New mammal and bird tracks from the Lower Oligocene of the Ebro Basin (NE Spain): implications for the Palaeogene ichnological record" published in Historical Biology. <br> The specimens are housed in the collection of the Natural Science Museum of the University of Zaragoza (MCNUZ). <br> <strong>Citation for this article</strong>: Linares Montes, M., Luzón, A., Cuenca-Bescós, G., Canudo, J. I., & Castanera, D. (2022). New mammal and bird tracks from the Lower Oligocene of the Ebro Basin (NE Spain): implications for the Palaeogene ichnological record. <em>Historical Biology</em>, 1-21. https://doi.org/10.1080/08912963.2022.2104644
DOI: 10.6084/m9.figshare.1399102.v2
title: Raw Data (Anonymised)

description: The data pertaines to the article "The Intra- and Inter-Rater Reliability of an Instrumented Spasticity Assessment in Children with Cerebral Palsy". The values were used to calculate the various components of reliability.
DOI: 10.6084/m9.figshare.14442161.v1
title: Korso_pep_representative.fa.gz

description: Korso representative protein sequences
DOI: 10.6084/m9.figshare.24194982.v1
title: animal 2

description: Raw TIFF image files for 2-photon experiment conducted on Col1a1-GFP+ postnatal day 8 mouse pups. File for Animal #2 imaged 04/21/2022. Each image is named by area name (A-C), imaging magnification (3x), and timepoints collected (t0-t6).