cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7583774.v1
title: Data used in this study from Egg retrieval versus egg rejection in cuckoo hosts

description: Before complex nests evolved, birds laid eggs on the ground, and egg retrieval evolved as an adaptation against accidental displacement of eggs outside the nest. Therefore, egg retrieval is an ancient, and likely ancestral, widespread behaviour in birds. However, it has received little attention in studies of avian brood parasitism, perhaps because most parasitism occurs in species with complex nests, a context in which egg retrieval seems irrelevant. However, for cavity-nesting hosts of avian brood parasites, egg retrieval may still play an important role in the coevolutionary interactions between obligate brood parasites and hosts, because egg retrieval can be considered to be antagonistic to egg rejection behaviour in hosts, yet both may involve cognition to recognize eggs. We hypothesized that (1) cavity-nesting hosts should retrieve misplaced eggs from outside the nest cup, (2) brood parasitism has modulated egg retrieval behaviour in cavity-nesting hosts and (3) hosts use the same visual cues for decision-making during egg recognition in both egg retrieval and egg rejection actions. To test these hypotheses, we performed a series of experiments in a cavity-nesting host, the green-backed tit (<i>Parus monticolus</i>). Foreign eggs with different levels of mimicry were placed within or outside nest cups of hosts to test their responses. We found that host decisions about whether to retrieve or reject an egg both depended on the degree of mimicry. However, hosts sometimes first retrieved poorly mimetic foreign eggs and then rejected them. Alternatively, hosts sometimes failed to retrieve highly mimetic conspecific eggs. We suggest that egg retrieval in hosts is likely to be a result of the interaction between ancient retrieval behaviour and subsequent adaptation against brood parasitism.This article is part of the theme issue ‘The co-evolutionary biology of brood parasitism: from mechanism to pattern’.
DOI: 10.5281/zenodo.10655822
title: Data and code: Zhang et al. (2024) Climate and land use changes explain variation in the A horizon and soil thickness in the United States. Communications Earth & Environment

description: Zip folder containing the data and code that support the findings of Zhang et al. (2024) Climate and land use changes explain variation in the A horizon and soil thickness in the United States. Communications Earth & Environment
DOI: 10.5281/zenodo.10655823
title: Data and code: Zhang et al. (2024) Climate and land use changes explain variation in the A horizon and soil thickness in the United States. Communications Earth & Environment

description: Zip folder containing the data and code that support the findings of Zhang et al. (2024) Climate and land use changes explain variation in the A horizon and soil thickness in the United States. Communications Earth & Environment
DOI: 10.6084/m9.figshare.17020934
title: Additional file 3 of Identification of candidate genes and enriched biological functions for feed efficiency traits by integrating plasma metabolites and imputed whole genome sequence variants in beef cattle

description: Additional file 3. This file contains a summary of candidate genes for the 11 metabolites.
DOI: 10.6084/m9.figshare.19106239
title: Additional file 6 of Diagnostic Evidence GAuge of Single cells (DEGAS): a flexible deep transfer learning framework for prioritizing cells in relation to disease

description: Additional file 6. Differential gene expression for Subtype 2 cells
DOI: 10.6084/m9.figshare.17020934.v1
title: Additional file 3 of Identification of candidate genes and enriched biological functions for feed efficiency traits by integrating plasma metabolites and imputed whole genome sequence variants in beef cattle

description: Additional file 3. This file contains a summary of candidate genes for the 11 metabolites.
DOI: 10.6084/m9.figshare.7583753.v1
title: Table S2 The correlation of OTU numbers, a-diversity, bacterial abundance and soil respiration with soil properties from Distinct effects of short-term reconstructed topsoil on soya bean and corn rhizosphere bacterial abundance and communities in Chinese Mollisol

description: Eroded Black soils (classified as Mollisols) lead to a thinner topsoil layer, reduced organic carbon storage and declined crop productivity. Understanding the changes in soil microbial communities owing to soil erosion is of vital importance as soil microbial communities are sensitive indicators of soil condition and are essential in soil nutrient cycling. This study used the reconstructed facility with 10, 20 and 30 cm topsoil thickness under no-till soya bean–corn rotation in Black soil region of Northeast China. Illumina MiSeq sequencing targeting 16S rRNA, <i>q</i>PCR and soil respiration measurement was performed to assess the changes in soya bean and corn rhizosphere bacterial communities, as well as their abundance and activities due to the topsoil thickness. The results showed that soil bacterial communities from both soya bean and corn were more sensitive to topsoil removal than to soil biogeochemical characteristics. Topsoil depths significantly influenced both soya bean and corn bacterial communities, while they only significantly influenced the bacterial abundance and respiration in corn. We also found that the topsoil depths significantly induced the changes in phyla and genera from both soya bean and corn rhizosphere bacterial community, which aid further understandings on how topsoil layer influences the global nutrient cycling of Mollisols by influencing the change in microbial communities.
DOI: 10.6084/m9.figshare.17020940
title: Additional file 1 of Transcriptomic responses to drought stress in Polygonatum kingianum tuber

description: Additional file 1: Supplementary Table S1. Differentially expressed genes between treatments Z6 and Z8 in P. kingianum tuber. Supplementary Table S2. Differentially expressed genes between treatments Z4 and Z8 in P. kingianum tuber. Supplementary Table S3. Differentially expressed genes between treatments Z2 and Z8 in P. kingianum tuber. Supplementary Table S4. List of core DEGs that were expressed between drought and control treatments in P. kingianum tuber. Supplementary Table S5. DEGs expressed between extreme drought (Z2) and rewatering (ZF) treatments in P. kingianum tuber.
DOI: 10.6084/m9.figshare.7583762
title: Supplementary Table 2 from Large-scale gene analysis using a rabbit atherosclerosis model to discover new biomarkers for human coronary artery disease

description: The genes for each of the enriched GO analysis in Figure 5
DOI: 10.6084/m9.figshare.7583765
title: Supplementary Table 1 from Large-scale gene analysis using a rabbit atherosclerosis model to discover new biomarkers for human coronary artery disease

description: The list of 3716 differentially regulated genes in Figure 4
DOI: 10.6084/m9.figshare.7059350
title: MCScanX results

description: The intra- and inter-species collinear blocks are in text format and html format generated by MCScanX.
DOI: 10.6084/m9.figshare.7059353
title: TPS genes

description: The full-length and partial TPS genes with their Accessions and classification are presented in XLS/TSV format.
DOI: 10.6084/m9.figshare.17020940.v1
title: Additional file 1 of Transcriptomic responses to drought stress in Polygonatum kingianum tuber

description: Additional file 1: Supplementary Table S1. Differentially expressed genes between treatments Z6 and Z8 in P. kingianum tuber. Supplementary Table S2. Differentially expressed genes between treatments Z4 and Z8 in P. kingianum tuber. Supplementary Table S3. Differentially expressed genes between treatments Z2 and Z8 in P. kingianum tuber. Supplementary Table S4. List of core DEGs that were expressed between drought and control treatments in P. kingianum tuber. Supplementary Table S5. DEGs expressed between extreme drought (Z2) and rewatering (ZF) treatments in P. kingianum tuber.
DOI: 10.6084/m9.figshare.7059353.v1
title: TPS genes

description: The full-length and partial TPS genes with their Accessions and classification are presented in XLS/TSV format.
DOI: 10.6084/m9.figshare.7059356
title: Predicted coding genes

description: The protein-coding gene annotation results contain (1) the coordinates of genes, transcripts, exon and coding sequenes (CDS) in GFF3 format, (2) CDS of transcripts and their corresponding protein sequences (FASTA format).
DOI: 10.6084/m9.figshare.7583756.v2
title: Table S1 from Distinct effects of short-term reconstructed topsoil on soya bean and corn rhizosphere bacterial abundance and communities in Chinese Mollisol.

description: The correlation of OTU numbers, a-diversity, bacterial abundance and soil respiration with soil properties
DOI: 10.6084/m9.figshare.7583756.v1
title: Table S1 The correlations between soil biogeochemical characteristics and significantly affected genus by topsoil depths from Distinct effects of short-term reconstructed topsoil on soya bean and corn rhizosphere bacterial abundance and communities in Chinese Mollisol

description: Eroded Black soils (classified as Mollisols) lead to a thinner topsoil layer, reduced organic carbon storage and declined crop productivity. Understanding the changes in soil microbial communities owing to soil erosion is of vital importance as soil microbial communities are sensitive indicators of soil condition and are essential in soil nutrient cycling. This study used the reconstructed facility with 10, 20 and 30 cm topsoil thickness under no-till soya bean–corn rotation in Black soil region of Northeast China. Illumina MiSeq sequencing targeting 16S rRNA, <i>q</i>PCR and soil respiration measurement was performed to assess the changes in soya bean and corn rhizosphere bacterial communities, as well as their abundance and activities due to the topsoil thickness. The results showed that soil bacterial communities from both soya bean and corn were more sensitive to topsoil removal than to soil biogeochemical characteristics. Topsoil depths significantly influenced both soya bean and corn bacterial communities, while they only significantly influenced the bacterial abundance and respiration in corn. We also found that the topsoil depths significantly induced the changes in phyla and genera from both soya bean and corn rhizosphere bacterial community, which aid further understandings on how topsoil layer influences the global nutrient cycling of Mollisols by influencing the change in microbial communities.
DOI: 10.6084/m9.figshare.7583765.v1
title: Supplementary Table 1 from Large-scale gene analysis using a rabbit atherosclerosis model to discover new biomarkers for human coronary artery disease

description: The list of 3716 differentially regulated genes in Figure 4
DOI: 10.6084/m9.figshare.17020872
title: Additional file 1 of Comprehensive analysis of expression, prognosis and immune infiltration for TIMPs in glioblastoma

description: Additional file 1.
DOI: 10.18434/mds2-2943
title: SDNist v2: Deidentified Data Report Tool
DOI: 10.6084/m9.figshare.17020931
title: Additional file 2 of Identification of candidate genes and enriched biological functions for feed efficiency traits by integrating plasma metabolites and imputed whole genome sequence variants in beef cattle

description: Additional file 2. This file contains a summary of SNPs significantly associated with the 11 metabolites.
DOI: 10.6084/m9.figshare.19106233.v1
title: Additional file 4 of Diagnostic Evidence GAuge of Single cells (DEGAS): a flexible deep transfer learning framework for prioritizing cells in relation to disease

description: Additional file 4. DAM markers were derived from Keren-Shaul et al. [65]
DOI: 10.6084/m9.figshare.19106227
title: Additional file 2 of Diagnostic Evidence GAuge of Single cells (DEGAS): a flexible deep transfer learning framework for prioritizing cells in relation to disease

description: Additional file 2. DAA markers derived from Habib et al. [63]
DOI: 10.21949/1404455
title: National transportation statistics 2000
DOI: 10.17632/5f3hbm69w6.1
title: Data for: Characterization of Natural Organic Matter in Low-Carbon Sediments: Extraction and Analytical Approaches
DOI: 10.17632/rf9j8sdknt.3
title: PEF+CUR

description: The raw data underlying the findings which described the synergy.
DOI: 10.17632/83bvm9ymkc.1
title: Cladophorales chloroplast genes alignments

description: Nucleotides and amino acids alignments of chloropalast genes used in the study "The plastid genome in Cladophorales green algae is encoded by hairpin chloromosomes"
DOI: 10.5255/ukda-sn-852858
title: Young children seek out biased information about social groups
DOI: 10.5517/ccdc.csd.cc1pfw00
title: CCDC 1562462: Experimental Crystal Structure Determination

description: Related Article: Qi-Pin Qin, Ting Meng, Ming-Xiong Tan, Yan-Cheng Liu, Xu-Jian Luo, Bi-Qun Zou, Hong Liang|2018|Eur.J.Med.Chem.|143|1597|doi:10.1016/j.ejmech.2017.10.058
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1phg5t
title: CCDC 1563986: Experimental Crystal Structure Determination

description: Related Article: Cynthia A. Cuevas-Chávez, Julio Zamora-Moreno, Miguel A. Muñoz-Hernández, Christian Bijani, Sylviane Sabo-Etienne, Virginia Montiel-Palma|2017|Organometallics|37|720|doi:10.1021/acs.organomet.7b00566
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1phg6v
title: CCDC 1563987: Experimental Crystal Structure Determination

description: Related Article: Cynthia A. Cuevas-Chávez, Julio Zamora-Moreno, Miguel A. Muñoz-Hernández, Christian Bijani, Sylviane Sabo-Etienne, Virginia Montiel-Palma|2017|Organometallics|37|720|doi:10.1021/acs.organomet.7b00566
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1pnq35
title: CCDC 1569037: Experimental Crystal Structure Determination

description: Related Article: Peng Zhao, Xiao-Yong Yu, Xu-Feng Liu, Yu-Long Li|2018|Polyhedron|139|116|doi:10.1016/j.poly.2017.10.017
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1pnq46
title: CCDC 1569038: Experimental Crystal Structure Determination

description: Related Article: Peng Zhao, Xiao-Yong Yu, Xu-Feng Liu, Yu-Long Li|2018|Polyhedron|139|116|doi:10.1016/j.poly.2017.10.017
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1pnq57
title: CCDC 1569039: Experimental Crystal Structure Determination

description: Related Article: Peng Zhao, Xiao-Yong Yu, Xu-Feng Liu, Yu-Long Li|2018|Polyhedron|139|116|doi:10.1016/j.poly.2017.10.017
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1pnq68
title: CCDC 1569040: Experimental Crystal Structure Determination

description: Related Article: Peng Zhao, Xiao-Yong Yu, Xu-Feng Liu, Yu-Long Li|2018|Polyhedron|139|116|doi:10.1016/j.poly.2017.10.017
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1pnq79
title: CCDC 1569041: Experimental Crystal Structure Determination

description: Related Article: Peng Zhao, Xiao-Yong Yu, Xu-Feng Liu, Yu-Long Li|2018|Polyhedron|139|116|doi:10.1016/j.poly.2017.10.017
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.1036736
title: Results Of "Collaborative Spatial Reuse In Wireless Networks Via Selfish Multi-Armed Bandits"

description: This dataset contains the results obtained for the article "Collaborative Spatial Reuse in Wireless Networks via Selfish Multi-Armed Bandits", authored by Francesc Wilhelmi, Cristina Cano, Gergely Neu, Boris Bellalta, Anders Jonsson and Sergio Barrachina. The article has been sent to Elsevier Ad-hoc Networks.

The content of this dataset has been obtained by means of the code allocated in the following GitHub repository: https://github.com/fwilhelmi/collaborative_sr_in_wns_via_selfish_mabs

Contact information: francisco.wilhelmi@upf.edu
DOI: 10.5281/zenodo.1036737
title: Results Of "Collaborative Spatial Reuse In Wireless Networks Via Selfish Multi-Armed Bandits"

description: This dataset contains the results obtained for the article "Collaborative Spatial Reuse in Wireless Networks via Selfish Multi-Armed Bandits", authored by Francesc Wilhelmi, Cristina Cano, Gergely Neu, Boris Bellalta, Anders Jonsson and Sergio Barrachina. The article has been sent to Elsevier Ad-hoc Networks.

The content of this dataset has been obtained by means of the code allocated in the following GitHub repository: https://github.com/fwilhelmi/collaborative_sr_in_wns_via_selfish_mabs

Contact information: francisco.wilhelmi@upf.edu
DOI: 10.5281/zenodo.1036770
title: Hierarchical Boosting For Regulatory Genomics Modeling

description: This contains all the information for the Hematopoiesis dataset that was used in the Hierarchical Boosting for Regulatory Genomics Modeling paper.
DOI: 10.17632/wjvgy33mph.1
title: Data for: Assessment of bottom sediment in Lake Guaíba transitional waters, Southern Brazil
DOI: 10.5281/zenodo.1036771
title: Hierarchical Boosting For Regulatory Genomics Modeling

description: This contains all the information for the Hematopoiesis dataset that was used in the Hierarchical Boosting for Regulatory Genomics Modeling paper.
DOI: 10.4225/08/59f1729607abe
title: Parkes observations for project P892 semester 2017APRS_BPSR_28

description: SUPERBx is an extension to the SUPERB survey which looks at the highest Galactic latitudes in a search for fast radio bursts (FRBs). We will focus our efforts at high Galactic latitudes where our previous work has shown FRB detectability to be as much as 4 times higher than in the plane. SUPERBx uses optimised GPU codes to search for pulsars and fast radio bursts (FRBs), making discoveries in real time. Handling our data as it comes in is essential for the SKA Phase I era so this work applies directly to the high-data rates of next generation telescopes. The FRBs discovered (we have already discovered four FRBs in this project) will have much more associated information than all previous detections. Firstly our discovery lag is ~1 second, rather than months/years. The Parkes observations will be shadowed by other radio telescopes (in particular the refurbished Molonglo which has now reached a level of performance where it has independently discovered 3 FRBs in 2016) to allow localisation of the discovered FRBs, and a host of optical and high-energy telescopes will then be triggered as appropriate. This is key for identifying FRB host galaxies, so as to solve the mystery of their progenitors and to exploit their many uses as tools for precision cosmology measurements.
DOI: 10.5517/ccdc.csd.cc1pnq8b
title: CCDC 1569042: Experimental Crystal Structure Determination

description: Related Article: Peng Zhao, Xiao-Yong Yu, Xu-Feng Liu, Yu-Long Li|2018|Polyhedron|139|116|doi:10.1016/j.poly.2017.10.017
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.1037180
title: New Methods For The Genotyping Of Legionella Pneumophila - Establishment, Validation And Implementation Of A  Dna-Based Microarray And A Core Genome Multilocus Sequence Typing

description: This data presented here are part a doctoral thesis with the focus on new genotyping methods for the human pathogen <em>Legionella pneumophila</em>. The data are partially published in articles. 

The thesis can be downloaded: update of the URL is coming soon
DOI: 10.5281/zenodo.1037181
title: New Methods For The Genotyping Of Legionella Pneumophila - Establishment, Validation And Implementation Of A  Dna-Based Microarray And A Core Genome Multilocus Sequence Typing

description: This data presented here are part a doctoral thesis with the focus on new genotyping methods for the human pathogen <em>Legionella pneumophila</em>. The data are partially published in articles. 

The thesis can be downloaded: update of the URL is coming soon
DOI: 10.5517/ccdc.csd.cc1pq2k1
title: CCDC 1570353: Experimental Crystal Structure Determination

description: Related Article: Keiko Ogawa, Seikou Nakamura, Yumiko Asada, Masayuki Yamashita, Hisashi Matsuda|2017|Tetrahedron|73|7054|doi:10.1016/j.tet.2017.10.061
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1pq3n5
title: CCDC 1570387: Experimental Crystal Structure Determination

description: Related Article: Keiko Ogawa, Seikou Nakamura, Yumiko Asada, Masayuki Yamashita, Hisashi Matsuda|2017|Tetrahedron|73|7054|doi:10.1016/j.tet.2017.10.061
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.