cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3636689_d8.v1
title: Additional file 9 of Drug combinatorics and side effect estimation on the signed human drug-target network

description: Text file containing all drug pairs having negative side effect scores b i (j)&lt;0 and b j (i)&lt;0. (TXT 113 kb)
DOI: 10.6084/m9.figshare.c.3636689_d9.v1
title: Additional file 11 of Drug combinatorics and side effect estimation on the signed human drug-target network

description: Drug_Target_Signed_Network.mat. Matlab file containing the drug-target adjacency matrix. (TXT 28 kb)
DOI: 10.6084/m9.figshare.c.3636689_d11.v1
title: Additional file 5 of Drug combinatorics and side effect estimation on the signed human drug-target network

description: Text file containing all drug pairs having negative synergistic scores a i (j)&lt;0 and a j (i)&lt;0. (TXT 1082 kb)
DOI: 10.17863/cam.38851
title: Research data supporting: A versatile scanning method for volumetric measurements of velocity and density fields

description: Data collected from PIV/LIF as described in the paper.
DOI: 10.6084/m9.figshare.c.3636716_d12.v1
title: Additional file 9: Table S8. of Transcriptional analysis of phloem-associated cells of potato

description: RNA-seq output of petiole samples under photoperiod treatments. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.c.3636716_d15.v1
title: Additional file 11: Table S9. of Transcriptional analysis of phloem-associated cells of potato

description: Differentially expressed photoperiod genes. (XLSX 1172 kb)
DOI: 10.6084/m9.figshare.c.3636716_d16.v1
title: Additional file 12: Table S10. of Transcriptional analysis of phloem-associated cells of potato

description: Abundant transcripts significantly up-regulated under long days. (XLSX 77 kb)
DOI: 10.6084/m9.figshare.c.3636716_d14.v1
title: Additional file 21: Table S15. of Transcriptional analysis of phloem-associated cells of potato

description: Primers for real time RT-PCR. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3636716_d21.v1
title: Additional file 8: Table S7. of Transcriptional analysis of phloem-associated cells of potato

description: Abundant transcripts in PAC. (XLSX 324 kb)
DOI: 10.17863/cam.108461
title: Research data supporting "Freshwater mussel (Unio pictorum) shells reveal hydrological and environmental change from 1300 BC to the present day"

description: Datasets relating to freshwater mussels Unio pictorum collected from Must Farm archaeological site, contexts [3221] (MF1) and [363] (MF2) and the present-day River Nene (RN) and King's Dyke (KD). Mussels were measured using calipers to record length, width, height and length of each annual ring. For a subset of mussels, stable isotope samples in a sequence from umbo to ventral margin were also taken for d18O and d13C analysis.
DOI: 10.6084/m9.figshare.c.3636818_d1.v1
title: Additional file 4: Table S1. of Heterochromatin Protein 1β (HP1β) has distinct functions and distinct nuclear distribution in pluripotent versus differentiated cells

description: HP1β interacting partners in ESCs and MEFs by co-immunoprecipitation followed by LC-MS/MS analysis. Only proteins that were not identified in the corresponding control co-immunoprecipitation samples were regarded as specific. Hits found in both biological duplicates are in bold and underlined and are shown at the top. The eight proteins that were identified in both cell types are in bold and underlined and are shown at the bottom. Hits found also in negative control experiments similar to our experimental settings in the Contaminant Repository for Affinity Purification through its web interface [91] are most probably false negative interacting partners, and thus were excluded from the final list (Fig. 4a). Those few additional excluded hits are marked by an asterisk in the lists and are in gray and italics. (Control sets: CC76 CC78 CC79 CC80 CC81 CC82 with the following filters: Cell type-HEK293, Affitnity Support-Agaraose beads, Instrument Type for Mass Spectometry- LTQ-FT.) The HP1β interacting partners in MEFs were classified according to their functional annotation and biological process using Gene Ontology (GO). Only the different categories found to be statistically significant are indicated by colors and found in the legend of the pie chart on the right side of the excel sheet “HP1beta interactors MEF”. (XLSX 27.1 kb)
DOI: 10.17863/cam.17801
title: Research data supporting"Nanoscopic insights into the effect of silicon on core-shell InGaN/GaN nanorods: Luminescence, composition, and structure"

description: Research data in support of the publication" Nanoscopic insights into the effect of silicon on core-shell InGaN/GaN nanorods: Luminescence, composition, and structure". We have included all the figures.
DOI: 10.6084/m9.figshare.c.3636848_d3.v1
title: MOESM2 of Repositioning of bromocriptine for treatment of acute myeloid leukemia

description: Additional file 2: Table S2. Downregulated probe set upon AML differentiation.
DOI: 10.6084/m9.figshare.c.3636884_d1.v1
title: Additional file 1: of MetICA: independent component analysis for high-resolution mass-spectrometry based non-targeted metabolomics

description: Source code and raw datasets used for MetICA evaluation. Source code, raw datasets and user manual were also available at https://github.com/daniellyz/MetICA. (ZIP 4725 kb)
DOI: 10.6084/m9.figshare.c.3636908_d1.v1
title: Additional file 1: of The use of Amerindian charm plants in the Guianas

description: All reports on plant charms in the Guianas, retrieved from fieldwork, historic and recent literature and their characteristics. (ODS 48 kb)
DOI: 10.6084/m9.figshare.c.3636914_d1.v1
title: Additional file 5: Table S6. of Dual EZH2 and EHMT2 histone methyltransferase inhibition increases biological efficacy in breast cancer cells

description: Systematic pathway up/downregulation following treatment.
DOI: 10.6084/m9.figshare.c.3636914_d5.v1
title: Additional file 4: Table S5. of Dual EZH2 and EHMT2 histone methyltransferase inhibition increases biological efficacy in breast cancer cells

description: List of study accession numbers for EZH2 target meta-analysis.
DOI: 10.6084/m9.figshare.c.3636914_d9.v1
title: Additional file 3: Table S4. of Dual EZH2 and EHMT2 histone methyltransferase inhibition increases biological efficacy in breast cancer cells

description: Described lists of EZH2 targets, including a set of consensus EZH2-suppressed genes.
DOI: 10.17863/cam.58235
title: Research data supporting "Eliminating irreproducibility in SERS substrates"

description: Surface enhanced Raman spectroscopy (SERS) data from self-assembled gold nanoparticle to study how the reproducibility in SERS substrates can be improved.
DOI: 10.17863/cam.85268
title: Research data supporting "Revealing the Structural Coloration of Self-Assembled Chitin Nanocrystal Films"

description: Supporting data for the article titled "Revealing the Structural Coloration of Self-Assembled Chitin Nanocrystal Films", as published in Advanced Materials (2022). The data is provided within a structured set of folders compressed in zip, each correlating to a specific data type reported in the article and supplementary information. Please see .txt document: Data for "Revealing the Structural Coloration of Self-Assembled Chitin Nanocrystal Films" for further details
DOI: 10.17863/cam.54234
title: Research data supporting "Impact of health warning labels on snack selection: an online experimental study"

description: This online study assessed the impact of health warning labels (HWLs) on energy-dense snack selection. Participants completed an online selection task where they selected a snack from a selection of 12 snacks, 6 energy-dense and 6 non-energy-dense. Depending on the condition participants were randomised to, the energy-dense snacks displayed 1) image-and-text HWLs 2) text-only HWLs 3) no HWLs, with or without calorie information. A preregistered protocol and statistical analysis plan can be found here: https://osf.io/k7tw5/ Data and data dictionary files can be opened in Excel.
DOI: 10.6084/m9.figshare.c.3637037_d2.v1
title: Additional file 4: of Stimulating effect of normal-dosing of fibrates on cell proliferation: word of warning

description: P values obtained for changes in expression of Ki-67, cyclin E, cyclin A, Cdc25A and subcellular localization of PPARα receptor. Statistically different from control value are red (t-test, p
DOI: 10.6084/m9.figshare.c.3637043_d1.v1
title: MOESM1 of Material flows accounting for Scotland shows the merits of a circular economy and the folly of territorial carbon reporting

description: Additional file 1. C impact of materials model including the full model, sensitivity analysis and sources used in this study.
DOI: 10.6084/m9.figshare.c.3637037_d4.v1
title: Additional file 3: of Stimulating effect of normal-dosing of fibrates on cell proliferation: word of warning

description: P values obtained for changes in cell viability after fibrates treatment in plasma concentration ranges. Statistically different from control value are red (t-test, pâ
DOI: 10.6084/m9.figshare.c.3637058_d1.v1
title: Additional file 1: of Development and validation of clinical profiles of patients hospitalized due to behavioral and psychological symptoms of dementia

description: Review of classification systems developed for psychiatry. Summarizes several characteristics of existing classification systems that were developed for psychiatry. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3637061_d3.v1
title: Additional file 8: of Conserved 3′ UTR stem-loop structure in L1 and Alu transposons in human genome: possible role in retrotransposition

description: Coordinates of the 3′-end stem-loop for consensus sequences for 213 Alu subfamilies. (CSV 28 kb)
DOI: 10.6084/m9.figshare.c.3637061_d5.v1
title: Additional file 6: of Conserved 3â ˛ UTR stem-loop structure in L1 and Alu transposons in human genome: possible role in retrotransposition

description: Coordinates of stem-loops along the entire transposon length for the consensus sequence of each L1 subfamily. (CSV 472Â kb)
DOI: 10.6084/m9.figshare.c.3637061_d7.v1
title: Additional file 1: of Conserved 3â ˛ UTR stem-loop structure in L1 and Alu transposons in human genome: possible role in retrotransposition

description: Coordinates of 6622 L1s used in the study. (CSV 212Â kb)
DOI: 10.17863/cam.20380
title: Research data related to the publication: Real-time statistical modelling of data generated from self-sensing bridges

description: Fibre optic sensor strain data related to the above noted publication
DOI: 10.6084/m9.figshare.c.3637103_d2.v1
title: MOESM2 of Could patents interfere with the development of a cardiovascular polypill?

description: Additional file 2. Cardiovascular drug patent database.
DOI: 10.17863/cam.44798
title: Source Data for graphs in publication Finegan et al 2019 PloS Biology.

description: We are providing here the data that has been used for the graphs published in this paper, as specified by PLOS Data Policy. Movie names in data and paper are related to each other as follow: ubi-cad-gfp movies: Movie 1 = 05-06-2018-sdk-ubi-cad Movie 2 = 05-06-2018-sdk-ubi-cad_2 Movie 3 = 05-06-2018-sdk-ubi-cad_3 Movie 4 = 06-06-2018-sdk-ubi-cad_1 Movie 5 = 06-06-2018-sdk-ubi-cad_2 sdk- ; ubi-cad-gfp movies: Movie 1 = 03-07-20198-ubi-cad-gfp Movie 2 = 27-06-2018-ubi-cad-gfp_1 Movie 3 = 27-06-2018-ubi-cad-gfp_2 Movie 4 = 28-06-2018-ubi-cad-gfp-embryo1_1 Movie 5 = 28-06-2018-ubi-cad-gfp-embryo1_2
DOI: 10.15468/dl.n469nu
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Protocodon robinsiae (Small) Morin"
 ]
}

 The dataset includes 52 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037898-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3637112_d1.v1
title: MOESM2 of The core populations and co-occurrence patterns of prokaryotic communities in household biogas digesters

description: Additional file 2: Table S1. Prokaryotic diversity indices based on 97 % identity of 16S rRNA gene sequences and 2230 reads per sample. Table S2. The relative contributions (R square value) of each environmental factor to OTUs in all samples, Cluster I and II based on RDA analysis. Table S3. Relative abundances of core genera/OTUs in all 43 samples and sub-core genera/OTUs in Cluster I and II, and their correlation to environmental factors. Table S4. Relative abundances of the abundant phyla (average relative abundance &gt;0.1%) and genera (average relative abundance &gt;0.05 %). Table S5. Pearson’s correlation of abundant phyla and genera to environmental factors in Cluster I and II. Table S6. Pearson’s correlation of abundant methanogens to environmental factors in all samples. Table S7. Topological properties of co-occurring networks AS (43 samples), C1 (27 samples in Cluster I), and C2 (16 samples in Cluster II), generated with Gephi software. Table S8. Node information of 103 cosmopolitan OTUs in the network C1 (Cluster I). Table S9. Positive and negative interactions among modules in network AS, C1, and C2. Table S10. Node information of 206 cosmopolitan OTUs in the network C2 (Cluster II). Table S11. Node information of 110 cosmopolitan OTUs in the network AS (all samples). Table S12. Fermentation conditions and chemical properties in biogas digesters.
DOI: 10.17863/cam.85645
title: Research data supporting "Deconvoluting the Optical Response of Biocompatible Photonic Pigments"

description: Supporting data for the article titled "Deconvoluting the Optical Response of Biocompatible Photonic Pigments". The data is provided within a structured set of folders compressed in zip, each correlating to a specific figure or video in the article and supplementary information. Spreadsheets are provided as ‘.xlsx’ and '.csv', or as '.txt' for simulation or model calculation, GPC curves, and dn/dc data; original images as ‘.CR2, ‘.jpg’, ‘.tiff’, ‘.bmp’ and ‘.png’. NMR data are provided in zip. Pendant drop data are provided in avi and txt.
DOI: 10.17863/cam.96940
title: Research Data supporting "Three-dimensional operando optical imaging of particle and electrolyte heterogeneities inside Li-ion batteries"

description: Raw data for main text and extended data figures. Each folder contains a README file with information on how to plot and manipulate data. Associated codes for analysis of data.
DOI: 10.17863/cam.13758
title: Research data supporting "Relieving the frustration through Mn3+ substitution in Holmium Gallium Garnet "

description: The raw data used for preparation of the figures in the main text and supplementary information of the aforementioned manuscript is enclosed. More details are enclosed in the readme file, data files for each figure are located in the respective folder.
DOI: 10.6084/m9.figshare.c.3637160_d3.v1
title: Additional file 3: Table S2. of Systematic identification of phenotypically enriched loci using a patient network of genomic disorders

description: Phenotypically enriched loci (PELs) after the enrichment analysis (hypergeometric test, P-values &lt;0.05.) and case–control analysis (Fisher's exact test, P-values &lt;0.05). (XLSX 269 kb)
DOI: 10.6084/m9.figshare.c.3637160_d2.v1
title: Additional file 1: Table S1. of Systematic identification of phenotypically enriched loci using a patient network of genomic disorders

description: Collection of DECIPHER patients CNVs, mode of inheritance and phenotypes that have been analyzed from DECIPHER. (XLSX 2440 kb)
DOI: 10.6084/m9.figshare.c.3637160_d4.v1
title: Additional file 5: Table S4. of Systematic identification of phenotypically enriched loci using a patient network of genomic disorders

description: Relationship between Phenotypically enriched loci (PELs) and genomic disorders used from DECIPHER. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.c.3637160_d5.v1
title: Additional file 4: Table S3. of Systematic identification of phenotypically enriched loci using a patient network of genomic disorders

description: Relationship between Phenotypically enriched loci (PELs) and genomic disorders used from ClinVar, OMIM phenotypes caused by likely pathogenic and pathogenic CNVs from ClinVar. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.c.3637163_d2.v1
title: Additional file 2: Table S1. of The incidence, clearance and persistence of non-cervical human papillomavirus infections: a systematic review of the literature

description: Summary of HPV testing conducted in 38 articles included in the review. (XLSX 38 kb)
DOI: 10.15468/dl.rkkkhf
title: Occurrence Download

description: A dataset containing 185 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Atelopus manauensis Jorge, Ferrão & Lima, 2020",
 "Year 1979-2024"
 ]
}

 The dataset includes 185 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037899-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3637172_d1.v1
title: Additional file 11: Table S4. of Graded gene expression changes determine phenotype severity in mouse models of CRX-associated retinopathies

description: Compiled ordered lists of heatmap data presented in the manuscript. (XLSX 148 kb)
DOI: 10.6084/m9.figshare.c.3637172_d3.v1
title: Additional file 10: Table S3. of Graded gene expression changes determine phenotype severity in mouse models of CRX-associated retinopathies

description: Compiled table of results from GO analysis on rod- or cone-enriched genes from Fig.Â 6a. (XLSX 50 kb)
DOI: 10.17863/cam.78426
title: Research data supporting "Stabilized tilted-octahedra halide perovskites inhibit local formation of performance-limiting phases"

description: This dataset contains scanning electron diffraction, nano beam X-ray diffraction , photoluminescence, X-ray diffraction, nuclear magnetic and quadrupole resonance spectra and atomic force microscope/infrared spectroscopy data.
DOI: 10.6084/m9.figshare.c.3637193_d3.v1
title: Additional file 1: Table S1. of Genome-wide survey of two-component signal transduction systems in the plant growth-promoting bacterium Azospirillum

description: Complete list of genomes surveyed during this study. (XLSX 153 kb)
DOI: 10.6084/m9.figshare.c.3637193_d6.v1
title: Additional file 3: Table S2. of Genome-wide survey of two-component signal transduction systems in the plant growth-promoting bacterium Azospirillum

description: Domain architecture, genetic organization and subcellular localization of A. lipoferum 4B TCS components. (XLSX 40 kb)
DOI: 10.6084/m9.figshare.c.3637202_d1.v1
title: Additional file 1: of Detection of Trichomonas vaginalis in prostate tissue and serostatus in patients with asymptomatic benign prostatic hyperplasia

description: Raw data and statistical analysis. All data generated or analyzed during this study on each individual benign prostate hyperplasia (BPH) and control case is presented. The data includes information on the following: -Levels of IgG subtypes (OD values), -T vaginalis-PCR positive and negative cases (OD values), -All statistical data analyzed during this study on IgG subtypes among BPH and control subjects. (XLSX 39Â kb)
DOI: 10.17863/cam.82668
title: Research data supporting ''Deep Learning-based Multivariate Time Series Classification for Indoor Outdoor Detection"

description: Recorded sensor readings and the respective environment (indoor/outdoor) label for the paper "Deep Learning-based Multivariate Time Series Classification for Indoor Outdoor Detection". Each column contains the recorded values of a specific feature (name accordingly), while the last column is the target variable (1 refers to indoors and 0 to outdoors). The column "New_seq" indicates when a new recording starts (different date and place), it is not used as a training feature, and it allows to locate the different time series.
DOI: 10.6084/m9.figshare.c.3637238_d3.v1
title: Additional file 5: of Cross-tissue and cross-species analysis of gene expression in skeletal muscle and electric organ of African weakly-electric fish (Teleostei; Mormyridae)

description: Changes in gene expression between EO and SM for C. tshokwe transcriptome. Results of the edgeR DE-analysis. The table reports the fold-change in the expression levels and relative uncorrected and corrected p-values between EO and SM for all genes in the C. tshokwe transcriptome. (TXT 7336Â kb)
DOI: 10.6084/m9.figshare.c.3637238_d6.v1
title: Additional file 3: of Cross-tissue and cross-species analysis of gene expression in skeletal muscle and electric organ of African weakly-electric fish (Teleostei; Mormyridae)

description: Blast results of C. tshokwe transcriptome assembly. Tabular blast report showing the results of the blastx comparison between the transcriptome of C. tshokwe and the proteome of D. rerio. (TXT 19887Â kb)
DOI: 10.6084/m9.figshare.c.3637256_d9.v1
title: Additional file 3: of The prognostic potential of alternative transcript isoforms across human tumors

description: Discriminant transcript isoforms between stages and patient groups. (XLS 4562 kb)
DOI: 10.17863/cam.44747
title: Finite field formalism for bulk electrolyte solutions (data set)

description: All simulations can be run with the LAMMPS code (22 Sept 2017). See also https://github.com/uccasco/FiniteFields for additional source code required to apply the constant D ensemble. Constant E simulations can be performed with in.SPCE.efield. The user will need to replace with the appropriate value of E (along the z direction). Constant D simulations can be performed with in.SPCE.dfield. Likewise, the user will need to replace with the appropriate value of D. Also included are configurations corresponding to different concentrations (these have been obtained from D = 0 simulations). The number of ions pairs and water molecules is given by the filename e.g. 10pair_256wat.data contains 10 ion pairs and 256 water molecules. The name of the configuration file will need to replace the text "" on line 13 of the input files. Note the user may wish to perform shorter simulations for equilibration purposes, especially when changing the value of Dz, or switching to the E ensemble. See included README file.
DOI: 10.17863/cam.59414
title: Research data supporting 'How does a Carbon Tax affect Britain’s Power Generation Composition?'

description: Supporting data for OPF analysis of the UK's Power Grid.
DOI: 10.6084/m9.figshare.c.3637283_d1.v1
title: Additional file 4: of Accuracy of genomic selection for alfalfa biomass yield in different reference populations

description: List of SNPs, with flanking sequences, detected in PV data set. (ZIP 2612Â kb)
DOI: 10.17863/cam.39030
title: Research data for "The Effect of Temperature and Mo Content on the Lattice Misfit of Model Ni-Based Superalloys"

description: The Excel spreadsheet contains an overview tab (“Neutron Data”) which contains the name of each neutron diffraction run number, alongside the corresponding alloy and the temperature at which the data acquisition was carried out. The “Composition” tab contains the bulk composition of each alloy, as determined experimentally by SEM EDX. The “Precipitate Size” tab contains the areas of individual precipitates within each alloy. Between 128 and 345 precipitate areas are given for each alloy. The raw diffraction data are presented as individual ascii txt files for each run within the folder “Neutron Raw Data”. Each txt file is named as detailed in the Excel spreadsheet tab (“Neutron Data”). Each txt file contains four space-delimited columns of data (time-of-flight, d-spacing, intensity, intensity uncertainty).
DOI: 10.6084/m9.figshare.c.3637283_d2.v1
title: Additional file 6: of Accuracy of genomic selection for alfalfa biomass yield in different reference populations

description: List of barcodes needed for sequence data demultiplexing for data set PV. (TXT 13Â kb)