cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12274928.v1
title: Composition of coliform bacteria presenting in different samples.csv

description: Background: Anguilla is a dry to semi-arid island in the Caribbean where the majority of residents rely on roof-harvested rain water. The objective of this study was to assess the presence of indicator coliform bacteria and associated health risk to the consumer in Anguilla. Methods: Tap water samples were collected from 86 homes using harvested rain water for daily need. Bacterial count was enumerated by membrane filtration and culture on Difco Modified mTEC Agar and Hach m-ColiBlue24 agar. Bacteria grown on agar plates were counted by using darkfield colony counter. Results: Eighty seven percent samples were positive for indicator bacteria. Thermotolerant <i>E.coli</i> was grown in 56.6% samples, 78% of the household are drinking roof harvested rain water without any proper treatment. Only 28% household are cleaning the cisterns regularly, 45% of respondents who regularly drink cistern water experienced gastroenteritis, however only 10% respondents who only drink bottle water experienced gastroenteritis. Conclusions: Coliform bacteria were detected in roof-harvested rain water throughout Anguilla and posed a potential health risk to the consumers. Roof harvested rain water required a proper treatment for consumption.
DOI: 10.6084/m9.figshare.12790121
title: Supporting files for: Temporal dynamics of visual representations in the infant brain

description: <b>Supporting Files for: </b>Bayet, L., Zinszer, B. D., Reilly, E., Cataldo, J. K., Pruitt, Z., Cichy, R. M., Nelson C. A. & Aslin, R. N. (2020) Temporal dynamics of visual representations in the infant brain. <i>Developmental Cognitive Neuroscience. <br></i>https://doi.org/10.1016/j.dcn.2020.100860
DOI: 10.6084/m9.figshare.12943181
title: data.rar

description: udec and svm for rock slop
DOI: 10.6084/m9.figshare.12943181.v1
title: data.rar

description: udec and svm for rock slop
DOI: 10.6084/m9.figshare.12942206
title: R0218_20180216a_videos

description: Rat 0218, skilled reaching data collected in Leventhal laboratory by Alexandra Bovask<br>
DOI: 10.6084/m9.figshare.12931400
title: 2Ra funestus SNPs

description: Single nucleotide polymorphisms within inversion 2Ra (approximate coordinates: 25,967,767 - 33,984,223).<br>
DOI: 10.6084/m9.figshare.12933584
title: 3Ra funestus SNPs

description: Single nucleotide polymorphisms within inversion 3Ra (approximate coordinates: 1,866,360 - 11,289,547).<br>
DOI: 10.6084/m9.figshare.12933584.v1
title: 3Ra funestus SNPs

description: Single nucleotide polymorphisms within inversion 3Ra (approximate coordinates: 1,866,360 - 11,289,547).<br>
DOI: 10.6084/m9.figshare.12934787
title: 3Rb funestus SNPs

description: Single nucleotide polymorphisms within inversion 3Rb (approximate coordinates: 20,512,400 - 33,000,000).<br>
DOI: 10.5258/soton/d1536
title: Experimental study examining the effects of modification of maternal expressed anxiety and encouragement on infant affect and behaviour

description: Research data corresponding to empirical paper for research thesis. Paper title: Effects of modification of maternal expressed anxiety and encouragement on infant affect and behaviour, using a social referencing paradigm. Overall thesis title: The Influence of Child Temperament and Parenting Behaviours on the Development of Childhood Anxiety. Only members of the research team and responsible members of the University of Southampton may be given access to data about you for monitoring purposes and/or to carry out an audit of the study to ensure that the research is complying with applicable regulations. Individuals from regulatory authorities (people who check that we are carrying out the study correctly) may require access to your data. All of these people have a duty to keep your information, as a research participant, strictly confidential". ​Therefore, these are the only circumstances in which the data can be shared.
DOI: 10.5258/soton/d1527
title: Dataset for 'The off-axis IBII test for composites' (JDBM-D-20-00043R1)

description: This dataset supports the publication: 'The off-axis IBII test for composites' in Journal of Dynamic Behavior of Materials. IBII test raw images, kinematic fields, material property figures and processing codes for UD90, UD45 and MD45 CFRP specimens. Quasi-static data for the UD45 tensile test samples. List of Acronyms IBII = Image-Based Inertial Impact UD = Uni-Directional MD = Multi-Directional CFRP = Carbon Fibre Reinforced Polymer
DOI: 10.5258/soton/d1534
title: Dataset for 'A Room Compensation Method by Modification of Reverberant Audio Objectsâ

description: Additional material for: Menzies, D., Coleman, P., and Fazi, F. M. “Room Compensation by Modification of Reverberant Audio Objects”. IEEE Trans. Audio, Speech, Language Processing. Contents: 1. MATLAB code implementing the compensation method. 2. Samples generated by the code, that are used in the listening test.
DOI: 10.5519/qd.20syk399
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1346673 records)
DOI: 10.5519/qd.pfcljuu8
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (365817 records)
DOI: 10.7910/dvn/n97m6h/e5mirv
title: interp.m

description: :unav
DOI: 10.6084/m9.figshare.12942206.v1
title: R0218_20180216a_videos

description: Rat 0218, skilled reaching data collected in Leventhal laboratory by Alexandra Bovask<br>
DOI: 10.7910/dvn/n97m6h/llsfcb
title: init.m

description: :unav
DOI: 10.7910/dvn/n97m6h/z0fmcj
title: get_Gx_Gy.m

description: :unav
DOI: 10.5281/zenodo.3752136
title: Raw LFP data from Gothard Lab multisensory processing project

description: Data set contains LFPs collected from two adult male rhesus macaques (foz and blu). There are 41 total sessions. Data were collected with a 16-channel linear electrode array that was acutely lowered into the amygdala and surrounding tissue.
DOI: 10.5066/p90439kk
title: Bayou Sauvage NWR (LA) Haul Trail Snake Mortality, 2015-2017

description: Comprehensive list of carcasses detected at Haul Trail in Bayou Sauvage National Wildlife Refuge (Orleans Parish, LA) and relevant findings for specimens subject to postmortem examination at the USGS National Wildlife Health Center (Madison, WI).
DOI: 10.5517/ccdc.csd.cc25dbnl
title: CCDC 2007859: Experimental Crystal Structure Determination

description: Related Article: Jeanette A. Krause, Allen G. Oliver, William B. Connick, Seher Kuyuldar|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc25dcml
title: CCDC 2007889: Experimental Crystal Structure Determination

description: Related Article: Licheng Zhang|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc25dgjl
title: CCDC 2007979: Experimental Crystal Structure Determination

description: Related Article: Andreea Enachi, Jan Raeder, Marc D. Walter

|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc25dk5b
title: CCDC 2008061: Experimental Crystal Structure Determination

description: Related Article: Ilia A. Guzei, Hans J. Reich|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc25dk7d
title: CCDC 2008063: Experimental Crystal Structure Determination

description: Related Article: Ilia A. Guzei, Kristopher Kolonko, Hans J. Reich|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc25dyr9
title: CCDC 2008451: Experimental Crystal Structure Determination

description: Related Article: Bin Zhang|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc25dysb
title: CCDC 2008452: Experimental Crystal Structure Determination

description: Related Article: Bin Zhang|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc25dytc
title: CCDC 2008453: Experimental Crystal Structure Determination

description: Related Article: Bin Zhang|2020|CSD Communication|||
DOI: 10.5281/zenodo.4024677
title: Data: Search and Rescue with Airborne Optical Sectioning

description: This dataset supports the finding of our study "Search and Rescue with Airborne Optical Sectioning". Abstract: We show that automated person detection under occlusion conditions can be significantly improved by combining multi-perspective images before classification. Here, we employed image integration by Airborne Optical Sectioning (AOS)---a synthetic aperture imaging technique that uses camera drones to capture unstructured thermal light fields---to achieve this with a recall of 93%. Finding lost or injured people in dense forests is not generally feasible with thermal recordings, but becomes practical with use of AOS integral images. Our findings lay the foundation for effective future search and rescue technologies that can be applied in combination with autonomous or manned aircraft.<br>
DOI: 10.5281/zenodo.3894773
title: Data: Search and Rescue with Airborne Optical Sectioning

description: This dataset supports the finding of our study "Search and Rescue with Airborne Optical Sectioning". Abstract: We show that automated person detection under occlusion conditions can be significantly improved by combining multi-perspective images before classification. Here, we employed image integration by Airborne Optical Sectioning (AOS)---a synthetic aperture imaging technique that uses camera drones to capture unstructured thermal light fields---to achieve this with a recall of 93%. Finding lost or injured people in dense forests is not generally feasible with thermal recordings, but becomes practical with use of AOS integral images. Our findings lay the foundation for effective future search and rescue technologies that can be applied in combination with autonomous or manned aircraft.<br>
DOI: 10.5519/qd.6ajdivys
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.12943220
title: R0218_20180217a_videos

description: Rat 0218, skilled reaching data collected in Leventhal laboratory by Alexandra Bovask<br>
DOI: 10.6084/m9.figshare.12943220.v1
title: R0218_20180217a_videos

description: Rat 0218, skilled reaching data collected in Leventhal laboratory by Alexandra Bovask<br>
DOI: 10.6084/m9.figshare.12942209
title: R0197_20171130a_videos

description: Rat 0197, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12937103
title: Multivalent Interactions Drive Nucleosome Binding and Efficient Chromatin Deacetylation by SIRT6

description: The protein deacetylase SIRT6 maintains cellular homeostasis through multiple pathways that include the deacetylation of histone H3 and repression of transcription. Prior work suggests that SIRT6 is associated with chromatin and can substantially reduce global levels of H3 acetylation, but how SIRT6 is able to accomplish this feat is unknown. Here, we describe an exquisitely tight interaction between SIRT6 and nucleosome core particles, in which a 2:1 enzyme:nucleosome complex assembles via asymmetric binding with distinct affinities. While both SIRT6 molecules associate with the acidic patch on the nucleosome, we find that the intrinsically disordered SIRT6 C-terminus promotes binding at the higher affinity site through recognition of nucleosomal DNA. Together, multivalent interactions couple productive binding to efficient deacetylation of histones on endogenous chromatin. Unique among histone deacetylases, SIRT6 possesses the intrinsic capacity to tightly interact with nucleosomes for efficient activity. The HDX raw data for this work is provided.
DOI: 10.5281/zenodo.4024466
title: A2aR Oligomeric assemblies identified from MD simulations using in-vivo mimetic biomembranes

description: GPCR oligomerisation is known to play an important role in the receptor signalling. However, due to the technical challenges, the structural information of GPCR oligomerisation is still very limited, which hinders our understanding of GPCR signalling in a fuller picture. In this deposit, we provide the structural coordinates of various oligomeric assemblies (up to pentamers) of Adenosine A2a receptor that were sampled from unbiased MD simulations. For more information regarding the MD simulations and our findings on A2aR oligomerization, please check out our paper on BioRxiv: https://www.biorxiv.org/content/10.1101/2020.06.24.168260v1 <em>** Simulation setup **</em><br> 9 copies of A2aR were randomly inserted into an <em>in-vivo </em>mimetic biomembrane to build the initial configuration of the simulations. 10 such systems were set up for A2aR in the inactive state and 10 for the active state. The systems were represented by MARTINI 2 coarse-grained models and were simulated for 50 micro-seconds. The use of MARTINI coarse-grained force field would freeze the receptor conformation as in the initial configuration, thus decoupled the oligomerization from such processes as ligand-induced conformational change. The more efficient sampling of coarse-grained force field therefore allowed us to explore efficiently the protein-protein associations in the oligomerisation process. Protein-protein associations were identified when any atoms from two protomers were getting closer than 0.75 nm. The oligomerisation process was monitored and the sampled oligomeric assemblies were stored. <em>** Coordinate file explained **</em><br> The coarse-grained oligomeric structures were converted back to atomistic model in CHARMM force field. Oligomeric assemblies of the same oligomeric state (OS) were clustered to identify the different arrangements. 100 oligomeric arrangements (or all of the sampled oligomers if the cluster contains less than 100 samples) were randomly taken from each cluster and stored as seperate models in a pdb coordinate file. The pdb coordinate files were named as {Conf. State}_OS{Oligomeric State}_cl{Cluster id}.pdb, and can be viewed by such visualization tools as PyMol, Chimera or JMol etc. A Excel file containing some statistics of the oligomeric assemblies were also provided.
description: {"references": ["Song et al (2020) GPCR Oligomerisation Modulation by Conformational State and Lipid Interactions Revealed by MD Simulations and Markov Models; bioRxiv 2020.06.24.168260; doi: https://doi.org/10.1101/2020.06.24.168260"]}
DOI: 10.5523/bris.3u1v7dy42fk332watjl81m13y0
title: Data from Understanding metabolic behaviour whole-cell model

description: We provide tools to analyse single gene knock-out simulations of the Mycoplasma Genitalium whole-cell model.
DOI: 10.6084/m9.figshare.12894950
title: Table S3

description: <b>Table</b>
DOI: 10.6084/m9.figshare.12894950.v1
title: Table S3

description: <b>Table</b>
DOI: 10.17632/n66n5pj4f6.1
title: Antigen-specific adaptive immunity to SARS-CoV-2 in acute COVID-19 and associations with age and disease severity. Moderbacher et al.

description: We conducted an analysis of SARS-CoV-2 specific adaptive immune responses during acute COVID-19 in comparison with convalescent COVID-19 and unexposed, healthy controls and identified that coordination between SARS-CoV-2-specific CD4 T cells and CD8 T cells limits disease severity in COVID-19. Aged individuals more often exhibited uncoordinated adaptive responses, potentially tied to scarcity of naive T cells, highlighting immunologic risk factors linked to COVID-19 disease severity. The data available here include a simplified parameters sheet with experimental and donor information for the healthy unexposed, acute COVID-19, and convalescent COVID-19 donor samples included in this study. Additional information about the fields, field names, calculations, and patient cohorts are all provided in the published paper.
DOI: 10.5066/p9fwjpbd
title: Nesting habitat suitability for the Black-capped Petrel Pterodroma hasitata on Hispaniola, Supplementary Material

description: To focus nest-search efforts on Hispaniola and estimate the extent of the available nesting habitat, we analyzed the environmental characteristics of Black-capped Petrel (Pterodroma hasitata) nesting habitat and modeled suitable habitat on Hispaniola using openly available environmental datasets. Details on the methodology may be found in the associated publication (Satge et al. 2020, Habitat modelling locates nesting areas of the Endangered Black-capped Petrel Pterodroma hasitata on Hispaniola and identifies habitat loss. Bird Conservation International). Here we share Supplementary Material referenced in the publication (Zip file): 1) Georeferenced (projected) raster file of habitat suitability for nesting Black-capped Petrels on Hispaniola: - Satge et al 2020_Nesting habitat suitability raster_Pterodroma hasitata_90x90m_projected.TIF; 2) Maps of habitat suitability for the Black-capped Petrel on Hispaniola for suitability levels &gt; 0.65, and &gt; 0.90: - Satge et al 2020_Map of habitat suitability_Pterodroma_hasitata_065.PNG - Satge et al 2020_Map of habitat suitability_Pterodroma_hasitata_090.PNG. FGDC-compliant metadata are available for each set of materials.
DOI: 10.5281/zenodo.4024798
title: Ag2S nanoheaters with multiparameter sensing for reliable thermal feedback during in vivo tumor therapy

description: The emergence of luminescence nanothermometry in bio and nanomedicine has enabled achievements outside the reach of conventional techniques. For instance, it has provided real-time monitoring to in vivo thermal therapies of tumors, a mandatory requirement for these techniques to work safely and efficiently. However, the reliability of intratumoral thermal readings is currently in question due to the presence of artefacts caused by the inhomogeneous optical properties of biological tissues. This work demonstrates how it is possible to avoid, under specific conditions, these artefacts and reach precise and reliable in vivo intratumoral thermal feedback during in vivo photothermal treatments. The method proposed is based on the use of luminescent nanoparticles capable of multiparametric thermal sensing. The results demonstrate how the convergence of the different thermal readouts becomes a solid indicator of their reliability. It is shown how this new approach makes possible precise (thermal uncertainties below 1 °C) intratumoral thermal feed-back, while simple, efficient, and minimally invasive in vivo thermal treatments of surface tumors is carried out. Results included in this work provide an ingenious route toward the consolidation of luminescence nanothermometry as a convincing technique for high sensitivity preclinical thermal sensing, while also constituting a step toward improved photothermal therapies.
DOI: 10.5281/zenodo.4024797
title: Ag2S nanoheaters with multiparameter sensing for reliable thermal feedback during in vivo tumor therapy

description: The emergence of luminescence nanothermometry in bio and nanomedicine has enabled achievements outside the reach of conventional techniques. For instance, it has provided real-time monitoring to in vivo thermal therapies of tumors, a mandatory requirement for these techniques to work safely and efficiently. However, the reliability of intratumoral thermal readings is currently in question due to the presence of artefacts caused by the inhomogeneous optical properties of biological tissues. This work demonstrates how it is possible to avoid, under specific conditions, these artefacts and reach precise and reliable in vivo intratumoral thermal feedback during in vivo photothermal treatments. The method proposed is based on the use of luminescent nanoparticles capable of multiparametric thermal sensing. The results demonstrate how the convergence of the different thermal readouts becomes a solid indicator of their reliability. It is shown how this new approach makes possible precise (thermal uncertainties below 1 °C) intratumoral thermal feed-back, while simple, efficient, and minimally invasive in vivo thermal treatments of surface tumors is carried out. Results included in this work provide an ingenious route toward the consolidation of luminescence nanothermometry as a convincing technique for high sensitivity preclinical thermal sensing, while also constituting a step toward improved photothermal therapies.
DOI: 10.6084/m9.figshare.12942209.v1
title: R0197_20171130a_videos

description: Rat 0197, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.6994994.v7
title: Earth Analytics Bootcamp | Final Project Teaching Subset

description: This is a teaching data subset that contains data for fire occurrence in California between 1992 and 2015. Data included:<br><br>1. ca-fires-1992-2015-gt-100-acres.csv: contains one record for every fire greater than 100 acres that occurred between 1992 and 2015 in California. The dataset has columns for the size of the fire (acres) and for the year and month of the fire, along with other details about the cause, reporting agency, county name, etc.<br>2. ca-fires-monthly-count-1992-to-2015: contains the total monthly count of fires in California (greater than 100 acres) ; 24 rows/records (one for each year between 1992 and 2015) and 12 columns (one for each month from January to December) <br>3. ca-fires-monthly-mean-size-1992-to-2015: contains the average monthly fire size (acres) for all fires greater than 100 acres; 24 rows/records (one for each year between 1992 and 2015) and 12 columns (one for each month from January to December) <br><br>Source: U.S. Forest Service
DOI: 10.7284/108324
title: Fluorometer data collected during research cruise AE1101 using a Turner 10-AU instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108323
title: TSG (Thermosalinograph) data collected during research cruise AE1101 using a Sea-Bird SBE-21 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.4024811
title: Deep statistical solver : linear systems

description: Dataset of linear systems for the training and testing of a deep statistical solver
DOI: 10.5281/zenodo.3878580
title: Deep statistical solver : linear systems

description: Dataset of linear systems for the training and testing of a deep statistical solver
DOI: 10.5517/ccdc.csd.cc25fxl4
title: CCDC 2009376: Experimental Crystal Structure Determination

description: Related Article: Rui Liu, Shuang Yang, Zhizhou Chen, Xiangwen Kong, Houqiang Ding, Xinqiang Fang|2020|Org.Lett.|22|6948|doi:10.1021/acs.orglett.0c02505
DOI: 10.5281/zenodo.4024866
title: Deep statistical solver: AC power flow 14 nodes

description: Dataset of AC power flow problems on the IEEE 14 nodes
DOI: 10.5281/zenodo.3878676
title: Deep statistical solver: AC power flow 14 nodes

description: Dataset of AC power flow problems on the IEEE 14 nodes
DOI: 10.6084/m9.figshare.12939566
title: Brazilian Workers’ Exposure (COVID-19)

description: Brazilian Workers’ Exposure (COVID-19)<br>Package containing research outputs:- Brazilian Occupational Risk- Brazilian Economic Activities Risk (CNAE subclass)- Brazilian Economic Activities (CNAE subclass) x Presidential Decree (Mapping)<br>- Brazilian Essential Economic Activities Risk
DOI: 10.6084/m9.figshare.12939566.v1
title: Brazilian Workers’ Exposure (COVID-19)

description: Brazilian Workers’ Exposure (COVID-19)<br>Package containing research outputs:- Brazilian Occupational Risk- Brazilian Economic Activities Risk (CNAE subclass)- Brazilian Economic Activities (CNAE subclass) x Presidential Decree (Mapping)<br>- Brazilian Essential Economic Activities Risk
DOI: 10.5258/soton/d1543
title: Dataset for "Integrated vortex beam emitter in the THz frequency range: Design and simulation"

description: This dataset contains all the numerical data in manuscript "Integrated vortex beam emitter in the THz frequency range: Design and simulation", which was published as APL Photonics 5, 076102 (2020), at https://doi.org/10.1063/5.0010546. The file starts with a Readme sheet that explains the contents of the file, following by sheets containing the data.
DOI: 10.5258/soton/d1544
title: Dataset for "Continuous beam steering by coherent light-by-light control of dielectric metasurface phase gradient"

description: This dataset contains all the data in manuscript "Continuous beam steering by coherent light-by-light control of dielectric metasurface phase gradient" by Fei He, Kevin F MacDonald and Xu Fang, which is accepted for publication on Optics Express on 8 September 2020.