cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7844099
title: Additional file 8: of A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster

description: A. PCR results of the five 1 kb regions with more roo insertions predicted by TIDAL software. B. 1 kb regions with at least 1 roo insertion predicted by TIDAL software. Regions checked by PCR are highlighted in yellow. (XLSX 166 kb)
DOI: 10.6084/m9.figshare.7844087
title: Positive gene correlates for APOE4- males Temporal cortex

description: Positive gene correlates for APOE4- males, Temporal cortex
DOI: 10.6084/m9.figshare.7844093.v1
title: Additional file 6: of A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster

description: A. Coordinates (R6), length, recombination rates and PCR results of the 26 promoter regions with a roo insertion in the reference genome. B. PCR results and de novo TE information of the 28 promoter regions where &gt; = 3 strains putatively have a roo insertion based on TIDAL software predictions. C. Promoter regions where
DOI: 10.6084/m9.figshare.7844099.v1
title: Additional file 8: of A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster

description: A. PCR results of the five 1 kb regions with more roo insertions predicted by TIDAL software. B. 1 kb regions with at least 1 roo insertion predicted by TIDAL software. Regions checked by PCR are highlighted in yellow. (XLSX 166 kb)
DOI: 10.6084/m9.figshare.7844078
title: Negative gene correlates for APOE4+ males Temporal cortex

description: Negative gene correlates for APOE4+ males, Temporal cortex
DOI: 10.6084/m9.figshare.7844081
title: Positive gene correlates for APOE4- males Parietal cortex

description: Positive gene correlates for APOE4- males, Parietal cortex
DOI: 10.6084/m9.figshare.7844084
title: Positive gene correlates for APOE4- males Hippocampus

description: Positive gene correlates for APOE4- males, Hippocampus
DOI: 10.6084/m9.figshare.7844087.v1
title: Positive gene correlates for APOE4- males Temporal cortex

description: Positive gene correlates for APOE4- males, Temporal cortex
DOI: 10.6084/m9.figshare.7844081.v1
title: Positive gene correlates for APOE4- males Parietal cortex

description: Positive gene correlates for APOE4- males, Parietal cortex
DOI: 10.6084/m9.figshare.7844084.v1
title: Positive gene correlates for APOE4- males Hippocampus

description: Positive gene correlates for APOE4- males, Hippocampus
DOI: 10.6084/m9.figshare.7844075
title: Positive gene correlates for APOE4- males Frontal white matter

description: Positive gene correlates for APOE4- males, Frontal white matter
DOI: 10.6084/m9.figshare.7844078.v1
title: Negative gene correlates for APOE4+ males Temporal cortex

description: Negative gene correlates for APOE4+ males, Temporal cortex
DOI: 10.6084/m9.figshare.7844075.v1
title: Positive gene correlates for APOE4- males Frontal white matter

description: Positive gene correlates for APOE4- males, Frontal white matter
DOI: 10.6084/m9.figshare.7844051
title: Additional file 1: of A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster

description: Populations used for the analysis. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7844060
title: Additional file 2: of A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster

description: A. PCR results for the 277 strains analyzed in this work and in Merenciano et al. (2016). Strains used in Merenciano et al.Â (2016) are highlighted in blue. B. Tlex-2 predictions in Merenciano et al. (2016) compared to PCR results in this work. Correct predictions are highlighted in green. Strains with roo insertions not identified in Merenciano et al. (2016) are highlighted in orange. Strains for which no results were obtained either by T-lex2 or by PCR are highlighted in grey. C. Allelic frequencies of all the 20 roo insertions in all the populations analyzed. EU: Europe, NA: North America and ZI: Zambia. D. Allelic frequencies (%) of the 20 roo insertions in the 15 different populations analyzed. Elements only present in one population are highlighted in red. E. Expected genotype frequency of heterozygous flies with the two most common insertions, FBti0019985 and roo-90 in all the populations analyzed. a: FBti0019985 alellic frequency, b: roo-90 alellic frequency, and c: absent alellic frequency. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.7844060.v1
title: Additional file 2: of A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster

description: A. PCR results for the 277 strains analyzed in this work and in Merenciano et al. (2016). Strains used in Merenciano et al.Â (2016) are highlighted in blue. B. Tlex-2 predictions in Merenciano et al. (2016) compared to PCR results in this work. Correct predictions are highlighted in green. Strains with roo insertions not identified in Merenciano et al. (2016) are highlighted in orange. Strains for which no results were obtained either by T-lex2 or by PCR are highlighted in grey. C. Allelic frequencies of all the 20 roo insertions in all the populations analyzed. EU: Europe, NA: North America and ZI: Zambia. D. Allelic frequencies (%) of the 20 roo insertions in the 15 different populations analyzed. Elements only present in one population are highlighted in red. E. Expected genotype frequency of heterozygous flies with the two most common insertions, FBti0019985 and roo-90 in all the populations analyzed. a: FBti0019985 alellic frequency, b: roo-90 alellic frequency, and c: absent alellic frequency. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.7844042
title: Additional file 11: of A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster

description: List of primers used for insertional cluster validation. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7844051.v1
title: Additional file 1: of A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster

description: Populations used for the analysis. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7844042.v1
title: Additional file 11: of A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster

description: List of primers used for insertional cluster validation. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7844030
title: Additional file 10: of A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster

description: Phylogenetic tree of the 20 roo solo-LTR found in CG18446 promoter region and 115 other roo insertions annotated in the reference genome. (TXT 6 kb)
DOI: 10.6084/m9.figshare.7844030.v1
title: Additional file 10: of A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster

description: Phylogenetic tree of the 20 roo solo-LTR found in CG18446 promoter region and 115 other roo insertions annotated in the reference genome. (TXT 6 kb)
DOI: 10.6084/m9.figshare.7843994
title: MOESM1 of Analysis of the Cryptosporidium spp. and gp60 subtypes linked to human outbreaks of cryptosporidiosis in England and Wales, 2009 to 2017

description: Additional file 1: Table S1. A database of 178 Cryptosporidium outbreaks in England and Wales, 2009â 2017.
DOI: 10.6084/m9.figshare.7843994.v1
title: MOESM1 of Analysis of the Cryptosporidium spp. and gp60 subtypes linked to human outbreaks of cryptosporidiosis in England and Wales, 2009 to 2017

description: Additional file 1: Table S1. A database of 178 Cryptosporidium outbreaks in England and Wales, 2009â 2017.
DOI: 10.6084/m9.figshare.7843964
title: Additional file 1 of Timing the spinal cord development with neural progenitor cells losing their proliferative capacity: a theoretical analysis

description: All data and codes used to generate the figures are contained in the R script DataAndCode.R. (R 72 kb)
DOI: 10.6084/m9.figshare.7843964.v1
title: Additional file 1 of Timing the spinal cord development with neural progenitor cells losing their proliferative capacity: a theoretical analysis

description: All data and codes used to generate the figures are contained in the R script DataAndCode.R. (R 72 kb)
DOI: 10.6084/m9.figshare.7843952
title: Additional file 4: of A multifaceted approach for analyzing complex phenotypic data in rodent models of autism

description: Table S9. Shank3 model construct definitions (all KO and KI) (excel sheet). (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7843952.v1
title: Additional file 4: of A multifaceted approach for analyzing complex phenotypic data in rodent models of autism

description: Table S9. Shank3 model construct definitions (all KO and KI) (excel sheet). (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7843928
title: MOESM8 of Machine learning applied to transcriptomic data to identify genes associated with feed efficiency in pigs

description: Additional file 8: Table S4. List of canonical pathways identified by IPA from the most informative genes for RFI classification in liver and duodenum tissues.
DOI: 10.6084/m9.figshare.7843919
title: MOESM6 of Machine learning applied to transcriptomic data to identify genes associated with feed efficiency in pigs

description: Additional file 6: Table S3. List of most informative genes for RFI classification in liver and duodenum tissues having an orthologous human gene.
DOI: 10.6084/m9.figshare.7843928.v1
title: MOESM8 of Machine learning applied to transcriptomic data to identify genes associated with feed efficiency in pigs

description: Additional file 8: Table S4. List of canonical pathways identified by IPA from the most informative genes for RFI classification in liver and duodenum tissues.
DOI: 10.6084/m9.figshare.7843910
title: MOESM5 of Machine learning applied to transcriptomic data to identify genes associated with feed efficiency in pigs

description: Additional file 5: Table S2. Genes selected in duodenum, the number of times that a particular gene was selected (votes) and the cumulated value of the coefficients of the linear regression equations across all the analyses (“sumbetas”).
DOI: 10.6084/m9.figshare.7843919.v1
title: MOESM6 of Machine learning applied to transcriptomic data to identify genes associated with feed efficiency in pigs

description: Additional file 6: Table S3. List of most informative genes for RFI classification in liver and duodenum tissues having an orthologous human gene.
DOI: 10.6084/m9.figshare.7843910.v1
title: MOESM5 of Machine learning applied to transcriptomic data to identify genes associated with feed efficiency in pigs

description: Additional file 5: Table S2. Genes selected in duodenum, the number of times that a particular gene was selected (votes) and the cumulated value of the coefficients of the linear regression equations across all the analyses (“sumbetas”).
DOI: 10.6084/m9.figshare.7843904
title: MOESM3 of Machine learning applied to transcriptomic data to identify genes associated with feed efficiency in pigs

description: Additional file 3: Table S1. Genes selected in liver, the number of times that a particular gene was selected (votes) and the cumulated value of the coefficients of the linear regression equations across all the analyses (“sumbetas”).
DOI: 10.6084/m9.figshare.7843904.v1
title: MOESM3 of Machine learning applied to transcriptomic data to identify genes associated with feed efficiency in pigs

description: Additional file 3: Table S1. Genes selected in liver, the number of times that a particular gene was selected (votes) and the cumulated value of the coefficients of the linear regression equations across all the analyses (“sumbetas”).
DOI: 10.6084/m9.figshare.7843859
title: Additional file 2: of Genome-wide divergence among invasive populations of Aedes aegypti in California

description: Table S2. Pairwise FST values based on nuclear genome SNP data. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7843847
title: Additional file 1: of Genome-wide divergence among invasive populations of Aedes aegypti in California

description: Table S1. Metadata for each sample including geographic coordinates, collection date, genome sequencing related metrics, and genotypes of genetic-cluster-specific SNPs. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.7843859.v1
title: Additional file 2: of Genome-wide divergence among invasive populations of Aedes aegypti in California

description: Table S2. Pairwise FST values based on nuclear genome SNP data. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7843847.v1
title: Additional file 1: of Genome-wide divergence among invasive populations of Aedes aegypti in California

description: Table S1. Metadata for each sample including geographic coordinates, collection date, genome sequencing related metrics, and genotypes of genetic-cluster-specific SNPs. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.7843673
title: Additional file 9: of An interim report on the investigator-initiated phase 2 study of pembrolizumab immunological response evaluation (INSPIRE)

description: Table S6. Exome sequencing data quality data from baseline samples using Picard Tools v.2.6.0 Additional file 9: Table S6. (XLSX 76 kb)
DOI: 10.6084/m9.figshare.7843673.v1
title: Additional file 9: of An interim report on the investigator-initiated phase 2 study of pembrolizumab immunological response evaluation (INSPIRE)

description: Table S6. Exome sequencing data quality data from baseline samples using Picard Tools v.2.6.0 Additional file 9: Table S6. (XLSX 76 kb)
DOI: 10.6084/m9.figshare.7843547
title: Additional file 2: of Collagen density regulates the activity of tumor-infiltrating T cells

description: The number of reads per kilobase per million mapped (RPKM) for all RefSeq annotated genes. (XLSX 5563 kb)
DOI: 10.6084/m9.figshare.7843547.v1
title: Additional file 2: of Collagen density regulates the activity of tumor-infiltrating T cells

description: The number of reads per kilobase per million mapped (RPKM) for all RefSeq annotated genes. (XLSX 5563 kb)
DOI: 10.6084/m9.figshare.7843529
title: Additional file 4: of YPR2 is a regulator of light modulated carbon and secondary metabolism in Trichoderma reesei

description: Abundance of secondary metabolites as influenced by YPR2. This file contains mass spectrometry data from analysis of wildtype and â ypr2 in light and darkness. (XLSX 212 kb)
DOI: 10.6084/m9.figshare.7843529.v1
title: Additional file 4: of YPR2 is a regulator of light modulated carbon and secondary metabolism in Trichoderma reesei

description: Abundance of secondary metabolites as influenced by YPR2. This file contains mass spectrometry data from analysis of wildtype and â ypr2 in light and darkness. (XLSX 212 kb)
DOI: 10.5281/zenodo.4004573
title: ATTA-Ar calibration data for GRL submission

description: ATTA-Ar calibration data for GRL submission
DOI: 10.6084/m9.figshare.7843514
title: Additional file 1: of YPR2 is a regulator of light modulated carbon and secondary metabolism in Trichoderma reesei

description: Gene regulation by YPR2. This file contains data on gene regulation by YPR2 in constant light and constant darkness upon growth on cellulose along with clustered regulation and overlapping regulation with induction specific genes as well as by photoreceptors and CRE1. (XLSX 721 kb)
DOI: 10.6084/m9.figshare.7843517
title: Additional file 2: of YPR2 is a regulator of light modulated carbon and secondary metabolism in Trichoderma reesei

description: Functional category analysis of YPR2 targets. (XLSX 105 kb)
DOI: 10.6084/m9.figshare.7843514.v1
title: Additional file 1: of YPR2 is a regulator of light modulated carbon and secondary metabolism in Trichoderma reesei

description: Gene regulation by YPR2. This file contains data on gene regulation by YPR2 in constant light and constant darkness upon growth on cellulose along with clustered regulation and overlapping regulation with induction specific genes as well as by photoreceptors and CRE1. (XLSX 721 kb)
DOI: 10.5281/zenodo.4004572
title: ATTA-Ar calibration data for GRL submission

description: ATTA-Ar calibration data for GRL submission
DOI: 10.6084/m9.figshare.7843502
title: Additional file 9: of Postcranial heterochrony, modularity, integration and disparity in the prenatal ossification in bats (Chiroptera)

description: Table S3. PCA loadings of relative ossification rank for 24 postcranial bones. (CSV 1 kb)
DOI: 10.6084/m9.figshare.7843517.v1
title: Additional file 2: of YPR2 is a regulator of light modulated carbon and secondary metabolism in Trichoderma reesei

description: Functional category analysis of YPR2 targets. (XLSX 105 kb)
DOI: 10.6084/m9.figshare.7843502.v1
title: Additional file 9: of Postcranial heterochrony, modularity, integration and disparity in the prenatal ossification in bats (Chiroptera)

description: Table S3. PCA loadings of relative ossification rank for 24 postcranial bones. (CSV 1 kb)
DOI: 10.6084/m9.figshare.7843484
title: Additional file 6: of Postcranial heterochrony, modularity, integration and disparity in the prenatal ossification in bats (Chiroptera)

description: Table S2 Description of developmental stages 1–10 based on CRL ranges and ossification events that characterise each stage. “X” represents the ossification onset of a given bone. (CSV 1 kb)
DOI: 10.6084/m9.figshare.7843484.v1
title: Additional file 6: of Postcranial heterochrony, modularity, integration and disparity in the prenatal ossification in bats (Chiroptera)

description: Table S2 Description of developmental stages 1–10 based on CRL ranges and ossification events that characterise each stage. “X” represents the ossification onset of a given bone. (CSV 1 kb)
DOI: 10.6084/m9.figshare.7843469
title: Additional file 3: of Postcranial heterochrony, modularity, integration and disparity in the prenatal ossification in bats (Chiroptera)

description: Table S1. Average values (mm) of 25 postcranial linear measurements of 66 specimens of 11 bat species and all species pooled. Standard deviation in parenthesis. (CSV 3 kb)
DOI: 10.6084/m9.figshare.7843469.v1
title: Additional file 3: of Postcranial heterochrony, modularity, integration and disparity in the prenatal ossification in bats (Chiroptera)

description: Table S1. Average values (mm) of 25 postcranial linear measurements of 66 specimens of 11 bat species and all species pooled. Standard deviation in parenthesis. (CSV 3 kb)
DOI: 10.6084/m9.figshare.7843454
title: Additional file 13: of Postcranial heterochrony, modularity, integration and disparity in the prenatal ossification in bats (Chiroptera)

description: Metric growth data used in this study. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.7843448
title: Additional file 12: of Postcranial heterochrony, modularity, integration and disparity in the prenatal ossification in bats (Chiroptera)

description: Ossification sequence data used in this study. (XLS 40 kb)
DOI: 10.6084/m9.figshare.7843454.v1
title: Additional file 13: of Postcranial heterochrony, modularity, integration and disparity in the prenatal ossification in bats (Chiroptera)

description: Metric growth data used in this study. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.7843442
title: Additional file 11: of Postcranial heterochrony, modularity, integration and disparity in the prenatal ossification in bats (Chiroptera)

description: Table S4. Bone size variance (disparity) and eigenvalue dispersion (integration) values of 24 postcranial bones of nine bat species included in this study. Left and right boxes include bones of the appendicular and axial module respectively. Int = Integration, Disp = disparity. (CSV 2 kb)
DOI: 10.6084/m9.figshare.7843442.v1
title: Additional file 11: of Postcranial heterochrony, modularity, integration and disparity in the prenatal ossification in bats (Chiroptera)

description: Table S4. Bone size variance (disparity) and eigenvalue dispersion (integration) values of 24 postcranial bones of nine bat species included in this study. Left and right boxes include bones of the appendicular and axial module respectively. Int = Integration, Disp = disparity. (CSV 2 kb)
DOI: 10.6084/m9.figshare.7843403
title: MOESM3 of Phenotypic and genetic characterisation revealed the existence of several biotypes within the Neorautanenia brachypus (Harms) C.A. wild accessions in South East Lowveld, Zimbabwe

description: Additional file 3. Binary data presentation of the RAPD Polymorphic DNA fragments for the 14 morphologically distinguished biotypes. The file shows the binary score of each polymorphic DNA fragment produced by the RAPD banding pattern. The columns are the biotypes while the rows are the RAPD primers; indicating primer name and polymorphic DNA fragment size. The fragments are scored for each biotype as presence or absent; one and zero respectively.
DOI: 10.6084/m9.figshare.7843397
title: MOESM2 of Phenotypic and genetic characterisation revealed the existence of several biotypes within the Neorautanenia brachypus (Harms) C.A. wild accessions in South East Lowveld, Zimbabwe

description: Additional file 2. Leaf morphological attributes scored. The file shows the measured as well as the scored leaf attributes of the descriptors for each sampled Neorautanenia brachypus plant accession. The columns are the descriptors while the rows are the plant accessions. Measurement and scoring of descriptors was done according to [22] and [23].
DOI: 10.6084/m9.figshare.7843397.v1
title: MOESM2 of Phenotypic and genetic characterisation revealed the existence of several biotypes within the Neorautanenia brachypus (Harms) C.A. wild accessions in South East Lowveld, Zimbabwe

description: Additional file 2. Leaf morphological attributes scored. The file shows the measured as well as the scored leaf attributes of the descriptors for each sampled Neorautanenia brachypus plant accession. The columns are the descriptors while the rows are the plant accessions. Measurement and scoring of descriptors was done according to [22] and [23].
DOI: 10.6084/m9.figshare.7843253
title: Additional file 2: of Epidemiology of paediatric gastrointestinal colonisation by extended spectrum cephalosporin-resistant Escherichia coli and Klebsiella pneumoniae isolates in north-west Cambodia

description: Table S3. Detail of genetic contexts for blaCTX-M in sequenced isolates. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.7843247
title: Additional file 5: of Elymus nutans genes for seed shattering and candidate gene-derived EST-SSR markers for germplasm evaluation

description: Table S4. Gene-based EST-SSR primer information: reverse and forward. (XLS 188 kb)
DOI: 10.6084/m9.figshare.7843253.v1
title: Additional file 2: of Epidemiology of paediatric gastrointestinal colonisation by extended spectrum cephalosporin-resistant Escherichia coli and Klebsiella pneumoniae isolates in north-west Cambodia

description: Table S3. Detail of genetic contexts for blaCTX-M in sequenced isolates. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.7843241
title: Additional file 4: of Elymus nutans genes for seed shattering and candidate gene-derived EST-SSR markers for germplasm evaluation

description: Table S3. Differentially expressed transcripts related to seed shattering found in abscission zone at 21â days (AZ-21) and 28â days (AZ-28) after heading. (XLS 165 kb)
DOI: 10.6084/m9.figshare.7843247.v1
title: Additional file 5: of Elymus nutans genes for seed shattering and candidate gene-derived EST-SSR markers for germplasm evaluation

description: Table S4. Gene-based EST-SSR primer information: reverse and forward. (XLS 188 kb)
DOI: 10.6084/m9.figshare.7843232
title: Additional file 3: of Elymus nutans genes for seed shattering and candidate gene-derived EST-SSR markers for germplasm evaluation

description: Table S2. Differentially expressed transcripts related to seed shattering found in abscission zone and non-abscission zone. (XLS 357 kb)
DOI: 10.6084/m9.figshare.7843241.v1
title: Additional file 4: of Elymus nutans genes for seed shattering and candidate gene-derived EST-SSR markers for germplasm evaluation

description: Table S3. Differentially expressed transcripts related to seed shattering found in abscission zone at 21â days (AZ-21) and 28â days (AZ-28) after heading. (XLS 165 kb)