cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/68bhhsy2p4
title: FabT_+or-Tween_S.pyogenesM28_Transcriptomic analysis

description: We used RNAseq to identify how membrane fatty acid changes might impact and explain the virulence defect during host infection. WT and mFabT expression was compared in THY, and in THY-Tween (as C18:1Δ9 source), which to activates WT FabT repression. 
RNA isolation and Illumina RNA-seq sequencing:
GAS strains were cultured at 37°C in THY or THY-Tween, and cells were harvested during exponential growth (OD600 between 0.4 and 0.5). Independent triplicate cultures were prepared for each condition. For RNA preparation, 2 volumes of RNA protect (Qiagen) was added to cultures prior centrifugation (10 min 12,000 g) and total RNA was extracted after lysing bacteria by a 30 min 15 mg.ml-1 lysozyme, 300 U.ml-1 mutanolysin treatment at 20°C followed by two cycles of Fast-prep (power 6, 30 s) at 4 °C. RNA extraction (Macherey-Nagel RNA extraction kit; Germany) was done according to supplier instructions. RNA integrity was analyzed using an Agilent Bioanalyzer (Agilent Biotechnologies, Ca., USA). 23S and 16S rRNA were depleted from the samples using the MICROBExpress Bacterial mRNA enrichment kit (Invitrogen, France); depletion was controlled on Agilent Bioanalyzer (Agilent Biotechnologies). Libraries were prepared using an Illumina TS kit. Libraries were sequenced generating 10,000,000 to 20,000,000 75-bp-long reads per sample.
RNA-Seq data analysis:
The MGAS6180 strain sequence (NCBI), which is nearly identical to M28PF1, was used as a reference sequence to map sequencing reads using the STAR software (2.5.2b) BIOCONDA (Anaconda Inc). RNA-seq data were analyzed using the hclust function and a principal component analysis in R 3.5.1 (version 2018-07-02). For differential expression analysis, normalization and statistical analyses were performed using the SARTools package and DESeq2 p-values were calculated and adjusted for multiple testing using the false discovery rate controlling procedure. We used UpsetR to visualize set intersections in a matrix layout comprising the mFabT versus the WT strain grown in THY and in THY-Tween, and growth in THY-Tween versus THY for each strain.
DOI: 10.17632/dm4b7wbwj2
title: Minimum wage and safety - LaFiandra and Schwab - July 20 2021

description: This dataset and .do file perform the analysis for "A higher minimum wage promotes workplace safety: Evidence from the restaurant industry."
DOI: 10.17632/453g8p489j
title: Datasets - Spontaneously occurring germline tumors in different wild-derived strains of hydra

description: Data used in the draft of the paper entitled "Spontaneously occurring germline tumors in different wild-derived strains of hydra"
DOI: 10.17632/94hc43vgct
title: LINF_120006800

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/fk692mcm64
title: LDHU3_10.0610

description: Dihydroxyacetone kinase 1-like protein; Leishmania donovani (HU3 strain)
DOI: 10.17632/n7dc2vvz3y
title: Le parent en position d’enseignant en temps de crise, une approche clinique. Entretiens avec quatre parents de Tahiti durant le confinement du mois d’avril 2020

description: Entretiens menés avec les parents d'élèves de 10 à 12 ans, durant la première période de confinement en 2020. Les entretins ont été menés à Tahiti, en Polynésie française. Ce corpus accompagne l'article : "Le parent en position d’enseignant : proximité de la relation et construction subite de la fonction didactique en temps de crise". Dans la situation particulière de cette étude, où la responsabilité de l’instruction repose explicitement sur le parent, qu’en est-il du discours de celui-ci et en quoi révèle-t-il "un déséquilibre en stabilisation" entre le déjà-là et le rôle assumé ? Cette étude exploratoire a été construite autour de la problématique suivante : Dans quelle mesure le discours des parents en temps de confinement reflète les transitions vers un rôle assumé ou subit dans un trapèze didactique ?
DOI: 10.17632/2ptw45gm9y
title: Mobile mono-copper active site for NO catalytic decomposition in high silica LTA zeolite

description: This dataset discloses the input files and optimised configurations associated with the entitled study.
DOI: 10.17632/g9t7dvrgrv
title: LINF_290024700

description: paraflagellar rod protein 1D | PFR1
Leishmania infantum (strain JPCM5)
DOI: 10.17632/mc4yfvpxkn
title: LINF_180011800

description: Sestrin
Leishmania infantum (strain JPCM5)
DOI: 10.17632/vjtwmvxfhx
title: Phase-field study of surface diffusion enhanced breakups of nanowire junctions: Simulation animations
DOI: 10.17632/28v4w4zy9f
title: Source data of the paper "COVID-19 made Asia-Pacific region especially China growing as the center of world production"

description: The dataset includes the international trade and production relocations between countries by 18 sector from 1995 to 2021.
DOI: 10.17632/85ths556fm
title: Supplementary Materials for Multi-tool Drilling Path Optimization by Multi-Agent Reinforcement Learning Approach

description: This document provides the details of workpieces and hyperparameter settings for participating algorithms.
DOI: 10.17632/fgfztw822s
title: Calculated phonon dispersion data with LO–TO splitting for C12H17ClN4OS·HCl·H2O crystals

description: Output file of phonon dispersion with LO–TO splitting for C12H17ClN4OS·HCl·H2O crystals calculated using CASTEP code
DOI: 10.17632/fjt3jvrw8v
title: The accuracy of prenatal echocardiographic diagnosis for fetal RAA and DAA

description: The accuracy of prenatal echocardiographic diagnosis for fetal RAA and DAA
DOI: 10.17632/hy2tys6mvn
title: Optimal sites in infrazigomatic crest according to craniofacial morphology.

description: Introduction: The infrazygomatic bone crest and other extra-alveolar regions represent a viable option for the placement of temporary anchorage devices when distalizing the upper arch. This approach allows for the movement of the dentition without concern for potential collisions between dental structures. Nevertheless, it is of the utmost importance to conduct a thorough examination of the anatomy of this region prior to the placement of mini-implants in order to prevent potential injuries, such as maxillary sinus perforations. The objective of the present study was to quantify the depth of the infrazygomatic crest and evaluate its correlations with age, gender, skeletal class, and vertical pattern. Methods: The study sample of this cross-sectional, retrospective study consisted of 201 cone-beam computed tomography (CBCT) scans collected from patients treated at the Orthodontic Master's Program of the University of Valencia and at a private dental clinic. The CBCT scans were collected over a period of five years, from January 2017 to May 2022. The total and intra-alveolar lengths were defined and measured at three points: the distal roots of the maxillary second molars, the distal roots of the maxillary first molars and the mesial roots of the maxillary first molars. These measurements were taken on both the right and left sides, using the Carestream 3D Imaging system (Atlanta, GA). 
Results: The total length at the mesiobuccal level of the first molars was found to be significantly longer on both sides (P=0.001). The intra-alveolar length exhibited statistically significant differences between the right and left sides, with those of the left side exhibiting greater length (P&lt;0.001). The normodivergent patterns demontstrated lower total length values compared to hypodivergent (P=0.006) and hyperdivergent patterns (P=0.033). 
Conclusions: A statistically significant inverse relationship was observed between the distance from the cementoenamel junction to the vestibular bone crest and the total and intra-alveolar lengths in the studied regions. The total length was greatest in the region of the mesiobuccal root of the maxillary first molars, followed by the region of the distal root of the second molars, and finally the region of the distobuccal root of the maxillary first molars. Individuals with normodivergent patterns exhibited the lowest total infrazygomatic ridge height. 
KEYWORDS: “Infrazygomatic bone crest” “Zygoma”; “Infrazygomatic”; “Cone-beam Computed Tomography”; “Craniofacial morphology”. “Temporary Skeletal Anchorage Devices”; “TSADs”
DOI: 10.17632/nfftdyshty
title: Hydrologic monitoring data

description: Monitoring of hydraulic parameters within slopes during rainfall events
DOI: 10.17632/br4xy4839r
title: Supplementary Table 1 for "Association between outpatient dermatology encounter relative value units and patient characteristics: A Retrospective Cross-Sectional Analysis"

description: This supplementary table includes the results of the mediation analysis run to identify whether certain dermatologic procedures explained the observed age, race, and sex differences in total RVU, with bootstrapping for 200 cycles with replacement to estimate the 95% Confidence Intervals.
DOI: 10.17632/gthsh28pfy
title: The effect of overgrowth and compression deformation on the Re-Os isotope dating of molybdenite

description: The dataset includes major element (in wt%) of Re-rich and Re-poor domains in molybdenite from the Longmendian Mo deposit in Table S1, LA-ICP-MS trace element composition (in ppm) of Re-rich and Re-poor domains in molybdenite from the Longmendian Mo deposit inTable S2
DOI: 10.17632/m5v2cjjv9w
title: The prevalence and geographic distribution of sarcoidosis in the United States Supplemental Appendix

description: Supplemental appendix showing ICD-9 and ICD-10 codes used for identifying sarcoidosis diagnosis (S1)  and inclusion criteria for data analysis (S2).
DOI: 10.17632/rd8gwk76wj
title: Optimizing infant nutrition: Proteomic insights from casein micelles in human and animal milks

description: Table S1. Identified proteins were quantified in milk casein micelles samples from human, Holstein cattle, buffalo, yak, camel, sheep, goat, horse, and donkey.
Table S2. Differential abundant milk casein micelles proteins between human, Holstein cattle, buffalo, yak, camel, sheep, goat, horse, and donkey using a proteomic approach.
Table S3. KEGG pathways of differential abundant milk casein micelles proteins between human and eight dairy animals.
Figure S1. Cluster analysis of milk casein micelles proteome between human, Holstein cattle, buffalo, yak, camel, sheep, goat, horse, and donkey.
DOI: 10.17632/wzgj9y5hp3
title: Supplemental File JDS18948 - Maternal body condition influences neonatal calf whole-blood innate immune molecular responses to ex vivo lipopolysaccharide challenge - DOI: 10.3168/jds.2020-18948

description: Supplemental File JDS18948 - Maternal body condition influences neonatal calf whole-blood innate immune molecular responses to ex vivo lipopolysaccharide challenge - DOI: 10.3168/jds.2020-18948
DOI: 10.17632/ybxvsh4dh7
title: Heliyon article data

description: Database for Dr Nesrine souayeh article
DOI: 10.17632/ch7b5gkvmc
title: germination indices of Ononis spinosa L.seeds among pre-sowing treatments

description: difference germination indices of Ononis spinosa L. seeds among physical and chemical pre sowing treatments
DOI: 10.17632/f86z4dhd8y
title: Floral resource wastage: most nectar produced by the mass-flowering crop oilseed rape (Brassica napus) is uncollected by flower-visiting insects

description: Inlcudes: nectar, pollen, insect density, quadrat, flowers per inflorescence
DOI: 10.17632/g7vf49mvd8
title: LDHU3_09.0950

description: Acyl-CoA binding protein; Leishmania donovani (HU3 strain)
DOI: 10.17632/hkhynb97m6
title: Data for: Piracy-controlled geometry of tide-dominated point bars: combined evidence from ancient sedimentary successions and modern channel networks
DOI: 10.17632/kc73bnzgh6
title: SIL+CdCl2+EtOH

description: The data sets show investigations into the effects of Silymarin (SIL) on testicular function and oxidative stress status of ethanol (EtOH) and cadmium chloride (CdCl2) treated rats. Sixty-six (66) adult male Wistar rats were randomly divided into 6 groups of equal animals, which includes control and experimental groups receiving SIL; EtOH; CdCl2; EtOH + SIL and CdCl2 + SIL. EtOH and CdCl2 caused significant decrease in sperm count, progressive motility, normal sperm cells and serum testosterone. There was also a significant reduction in superoxide dismutase, catalase and glutathione peroxidase levels while significant (p&lt;0.05) increase in malonaldehyde (MDA) was observed in EtOH and CdCl2 treated rats. SIL consumption decreased the lipid peroxidation and increased testicular enzymatic antioxidants in the EtOH and CdCl2 treated rats. Semen parameters and testosterone in EtOH and CdCl2 treated rats were ameliorated following SIL consumption.
DOI: 10.17632/y7jxnfgr35
title: Supplemental Material - Association between prepartum body condition score and prepartum and postpartum dry matter intake and energy balance in multiparous Holstein cows

description: The objectives of this retrospective observational study were to investigate the association between body condition score (BCS) at 21 d before calving with prepartum and postpartum dry matter intake (DMI), energy balance (EB), and milk yield. Data from 427 multigravid cows from 11 different experiments conducted at the University of Florida were used. Cows were classified according to their BCS at 21 d before calving as FAT (BCS ≥ 4.00; n = 83), MOD (BCS 3.25 to 3.75; n = 287), and THIN (BCS ≤ 3.00; n = 57). Daily DMI from −21 to −1 and from +1 to +28 DIM was individually recorded. Energy balance was calculated as the difference between net energy for lactation consumed and required. Dry matter intake in FAT cows was lesser than in MOD and THIN cows both prepartum (FAT = 9.97 ± 0.21, MOD = 11.15 ± 0.14, THIN = 11.92 ± 0.22 kg/d) and postpartum (FAT = 14.35 ± 0.49, MOD = 15.47 ± 0.38, THIN = 16.09 ± 0.47 kg/d). Dry matter intake was also lesser for MOD cows compared with THIN cows prepartum, but not postpartum. Energy balance in FAT cows was lesser than in MOD and THIN cows both prepartum (FAT = -4.16 ± 0.61, MOD = -1.20 ± 0.56, THIN = 0.88 ± 0.62 Mcal/d) and postpartum (FAT = -12.77 ± 0.50, MOD = -10.13 ± 0.29, THIN = -6.14 ± 0.51 Mcal/d). Energy balance was also lesser for MOD cows compared with THIN cows both prepartum and postpartum. There was a quadratic association between BCS at 21 d before calving and milk yield. Increasing BCS from 2.5 to 3.5 was associated with an increase in daily milk yield of 6.0 kg and 28 d cumulative milk of 147 kg. Increasing BCS from 3.5 to 4.5 was associated with a decrease in daily milk yield of 4.4 kg and 28 d cumulative milk of 116 kg. In summary, a moderated BCS at 21 d before calving was associated with intermediate DMI and EB pre- and postpartum but greater milk yield compared with thinner and fatter cows. Our findings indicate that a moderated BCS is ideal for ensuring a successful lactation.
DOI: 10.17632/ydjddrb2w4
title: LINF_230014800

description: acetyl CoA synthetase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/zn24kbg9xt
title: Data for "Water release and homogenization by dynamic recrystallization of quartz" by Junichi Fukuda, Takamoto Okudaira, and Yukiko Ohtomo in Solid Earth

description: We show analytical data for a paper entitled “Water release and homogenization by dynamic recrystallization of quartz” by Junichi Fukuda, Takamoto Okudaira, and Yukiko Ohtomo published in Solid Earth. Raw IR mapped data for Figs 6–9 in JASCO format (e.g., Fig6.jwa) and each exported IR spectrum for each sample position (e.g., Fig6_X1Y1.txt) are available. All data for each figure are also in one compressed zip file.
DOI: 10.17632/h338h7jvx9
title: Surgical strike and Indian newspapers

description: the researcher considered the first 14 days of coverage about the surgical strike starting from 29 September 2016. In this period, 114 articles appeared on Times of India (ToI), 102 in The Hindu (TH), and 29 in The Wire (TW) It has to be noted that the number of articles in TW seems to be smaller, but each story had multiple updates on the same day and other days for a few. Accounting for these updates, the total number of stories shall double the face count (which is around 60). A traditional newspaper has its limitation in extending the story as it receives updates on further developments. In contrast, a digital platform needs to hit the update button instantly. Hence, an initial short story updated at 6 in the morning on TW becomes a longer story by afternoon with as many updates as possible. A keyword, 'strike' anywhere in the story, including the headlines, has been considered in choosing the articles. The entire edition has been considered from the cover page to the sports page in all three news sources. An entire article's assertion has been considered for the study (Wimmer and Dominick, 2010). The study employs a descriptive content analysis with a codebook developed based on much research on a similar theme. The coding of each word has been studied empirically, and familiar themes are noted for each article. The codes employed in the study are drawn and revised from the study conducted by Jesper Falkheimer and Eva-Karin Olsson's paper on 2011's Norway's terrorist attack. Four parameters, Type of article, Journalistic Style, Framing, and Stance, are analyzed in analyzing the news items.
DOI: 10.17632/v6d6kp3f2j
title: Dermatologic Side Effects of Common Antibiotics Utilized in CF Exacerbations

description: Dermatologic Side Effects of Common Antibiotics Utilized in CF Exacerbations
DOI: 10.17632/vkmsk6gc3m
title: Diagenetic alteration in fossil giant clam shells: crystallographic texture detects alteration from pristine to secondary aragonite

description: Raw Raman spectroscopic and EBSD grain area data associated with the manuscript 'Diagenetic alteration in fossil giant clam shells: crystallographic texture detects alteration from pristine to secondary aragonite'.
DOI: 10.17632/xcpfkfbt5j
title: Harlan County Reservoir Cove Fish 2017 and 2018

description: This data includes fish abundances within connected and disconnected coves of Harlan County Reservoir Nebraska. Fish were sampled in 2017 and 2018 using trap nets in the spring and fall, and beach seines during the summer.
DOI: 10.17632/2c6dfmhznp
title: LINF_160019000

description: cytochrome c Leishmania infantum (strain JPCM5)
DOI: 10.17632/73j6zzxyh5
title: Source files and methodology EMR

description: Guide in data and methodology for the research The Zero-Debt Puzzle in BRICS Countries: Disentangling the Financial Flexibility and Financial Constraints Hypotheses
DOI: 10.17632/nxsxgvthzm
title: Assessment of outcomes of calciphylaxis

description: Supplemental tables
DOI: 10.17632/zczszym8vt
title: Aging features of the migratory locust at physiological and transcriptional levels

description: Background Non-Drosophila insects provide diverse aging types and important complementary systems for studies of aging biology. However, little attention has been paid to the special roles of non-Drosophila insects in aging research. Here, the aging-related features of the migratory locust, Locusta migratoria, were determined at the physiological, cellular, and transcriptional levels. Results In physiological assessments, the flight performance and sperm state of locusts displayed clear aging-related decline in male adults. At the cellular level, the incidence of mitochondrial abnormalities significantly increased in aged flight muscle, and apoptotic signals and nuclear abnormalities were enhanced in aged fat body but not in brain. Furthermore, organ-level transcriptional analyses demonstrated locusts have similar aging-related genes with model species and the unique organ-specific aging features. Different from those of Drosophila and mammals, the organ-specific aging features of locusts were characterized by intensive expression changes in flight muscle and fat body and little transcriptional and physiological changes in brain. Upregulation of genes involved in autophagy in flight muscle and detoxification in fat body suggested remarkable damage accumulation in old locusts. Some well-known aging genes and locust aging-related genes (i.e., IAP1, PGRP-SA, and LIPT1), whose roles in aging regulation were rarely reported, were demonstrated to affect lifespan, metabolism, and flight ability of locusts after RNAi. Conclusion This study revealed multi-level aging signatures of locust, thus laying a foundation for further investigation of aging mechanisms in this famous insect in the future.
DOI: 10.17632/5sd8pkst2y
title: Benchmarking the vibration velocity-based measurement methods to determine the radiated sound power from floor elements under impact excitation: dataset.

description: This dataset makes available the data that was used to in following paper: Simone Conta, Andrea Santoni, Anders Homb, Benchmarking the vibration velocity-based measurement methods to determine the radiated sound power from floor elements under impact excitation, Applied Acoustics, Volume 169, 2020, 107457,ISSN 0003-682X, https://doi.org/10.1016/j.apacoust.2020.107457. The paper provides detailed description of the simulated objects. Important data in Data_AluminumPlate.zip: NodesOnFace_coord: coordinates of the points on the plate. Freq = Frequency: frequency data for the spectra. AccN = fft_AccN: vibration velocity (m/s) spectra calculated at each point in the list. DataLab.zip contains 4 files, each for a tapping machine position in the experimental setup with the timber floor. Data is organised in a matrix, where each cell represents a measurement point. Data is the vibration velocity (m/s) spectra. Frequency axis is provided along with the data. Note that the matrix has size 16x10xfreq but only 13x10xfreq is populated. This corresponds to the description given in the paper. [This is a preliminary submission to share the data as quickly as possible. More detailed documentation is planned and work is ongoing. Work is including also cleaning the .mat files.]
DOI: 10.17632/byj7x9wnb3
title: Supplemental Tables for HS and CKD- CW

description: Supplementary Tables 1-4 for "Association of hidradenitis suppurativa with worsening chronic kidney disease " Supplementary Figure 1 for "Association of hidradenitis suppurativa with worsening chronic kidney disease "
DOI: 10.17632/g46smdhskj
title: Zenouz kaolin mine 5 years data

description: 5 years data has been collected to train algorithm in machine learning
DOI: 10.17632/v9ty6f3syd
title: LINF_360039000

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/2tz2hzgysp
title: LDHU3_10.0240

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/mcwsx52v5t
title: Mn doped ZnFe2O4

description: The deposited data sets are 1). powder XRD, 2) EDX, 3) UV-Visible for the sample Mn0.05Zn0.95Fe2O4 prepared by auto combustion method vis different mediators like Aloe Vera, Ethylene Glycol and Egg White.
DOI: 10.17632/n2rbncxy8h
title: LDHU3_18.0740

description: RNA binding protein | RBP12; Leishmania donovani (HU3 strain)
DOI: 10.17632/sk3rfbh4n4
title: LDHU3_10.0800

description: GP63 | Leishmanolysin; Leishmania donovani (HU3 strain)
DOI: 10.17632/xpgv6hgptm
title: MatSeaLevel: a Matlab software package for modeling postglacial sea-level changes subject to both temporal and altitudinal uncertainties

description: This package implements the hierarchical Bayesian model of postglacial sea-level changes subject to both temporal and altitudinal uncertainties in the Matlab environment. In this model, the trend and rate of postglacial sea-level changes are inferred from the noisy and sparse proxy record in terms of indext points within a hierarchical Bayesian framework.
DOI: 10.15468/dl.k62u3k
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Priacanthus meeki Jenkins, 1903",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025569-250127130748423/datasets/export for details.