cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24718074
title: Data from: Discovery of an endemism hotspot of freshwater mussels (Bivalvia: Unionidae) in Assam, with a description of two new genera

description: This data supplements our article "Discovery of an endemism hotspot of freshwater mussels (Bivalvia: Unionidae) in Assam, with a description of two new genera" (Zoological Journal of the Linnean Society, 2024; doi: 10.1093/zoolinnean/zlae052) and contains 11 files, described below.<b>Supplementary Datasets</b>:<b>Dataset S1.</b> Information on new samples and DNA sequences of freshwater mussels from Assam [separate XLSX file].<b>Dataset S2.</b> Information on DNA sequences of freshwater mussels (Unionidae) used to reconstruct multi-locus phylogenies (one or two haplotypes per species) [separate XLSX file].<b>Dataset S3.</b> Reference DNA sequence library for correct molecular identification of freshwater mussels of the subfamily Parreysiinae from South and Southeast Asia (one or two haplotypes per species) [separate XLSX file].<b>Dataset S4.</b> Reference <i>COI</i> sequences for correct molecular identification of freshwater mussels of the subfamily Parreysiinae from South and Southeast Asia [separate FASTA file].<b>Supplementary Figure:</b><b>Figure S1.</b> [PDF and TRE files] Maximum likelihood phylogeny based on the reference <i>COI</i> barcode library of Asian Parreysiinae. The phylogeny was calculated using unique haplotypes, while all sequences were added to this tree at the post-calculation stage for visualization purposes. Each sequence name contains the following information: GenBank accession number | species name | collecting region (see Datasets S1 and S3 for sample detail and Dataset S4 for <i>COI</i> gene sequences). The black numbers near nodes are bootstrap support values of IQ-TREE v. 1.6.12. The scale bar indicates the branch length (substitutions per site). The titles of new sequences from Assam are red (colors only in PDF file).<b>Supplementary Tables:</b><b>Supplementary Table S1.</b> The <i>COI</i>-based uncorrected p-distances (mean ± standard error estimate, %) between species in the tribe Parreysiini [separate PDF file].<b>Supplementary Table S2.</b> The <i>COI</i>-based uncorrected p-distances (mean ± standard error estimate, %) between species in the genus <i>Lamellidens </i>[separate PDF file]<i>.</i><b>Supplementary Table S3.</b> The <i>COI</i>-based uncorrected p-distances (mean ± standard error estimate, %) between species in the genus <i>Trapezidens </i>and <i>Balwantia soleniformis </i>[separate PDF file]<i>.</i><b>Supplementary Table S4.</b> The <i>COI</i>-based uncorrected p-distances (mean ± standard error estimate, %) between species in the genus <i>Indonaia </i>and <i>Pseudoscabies scobina </i>[separate PDF file]<i>.</i><br><b>Cover Image:</b><b><i>Cover image:</i></b> Living topotype of <i>Assamnaia involuta</i> (Hanley, 1856) from a shallow oxbow lake in the Dhansiri River valley, Golaghat, Assam, 26 March 2022. Note unusual bluish brilliance of the periostracum. Photo: J. Sonowal & D. Kardong [separate PDF file].
DOI: 10.6084/m9.figshare.24718074.v2
title: Data from: Discovery of an endemism hotspot of freshwater mussels (Bivalvia: Unionidae) in Assam, with a description of two new genera, v1

description: This data supplements our article "Discovery of an endemism hotspot of freshwater mussels (Bivalvia: Unionidae) in Assam, with a description of two new genera" (Zoological Journal of the Linnean Society, 2024; doi: 10.1093/zoolinnean/zlae052) and contains 11 files, described below.<b>Supplementary Datasets</b>:<b>Dataset S1.</b> Information on new samples and DNA sequences of freshwater mussels from Assam [separate XLSX file].<b>Dataset S2.</b> Information on DNA sequences of freshwater mussels (Unionidae) used to reconstruct multi-locus phylogenies (one or two haplotypes per species) [separate XLSX file].<b>Dataset S3.</b> Reference DNA sequence library for correct molecular identification of freshwater mussels of the subfamily Parreysiinae from South and Southeast Asia (one or two haplotypes per species) [separate XLSX file].<b>Dataset S4.</b> Reference <i>COI</i> sequences for correct molecular identification of freshwater mussels of the subfamily Parreysiinae from South and Southeast Asia [separate FASTA file].<b>Supplementary Figure:</b><b>Figure S1.</b> [PDF and TRE files] Maximum likelihood phylogeny based on the reference <i>COI</i> barcode library of Asian Parreysiinae. The phylogeny was calculated using unique haplotypes, while all sequences were added to this tree at the post-calculation stage for visualization purposes. Each sequence name contains the following information: GenBank accession number | species name | collecting region (see Datasets S1 and S3 for sample detail and Dataset S4 for <i>COI</i> gene sequences). The black numbers near nodes are bootstrap support values of IQ-TREE v. 1.6.12. The scale bar indicates the branch length (substitutions per site). The titles of new sequences from Assam are red (colors only in PDF file).<b>Supplementary Tables:</b><b>Supplementary Table S1.</b> The <i>COI</i>-based uncorrected p-distances (mean ± standard error estimate, %) between species in the tribe Parreysiini [separate PDF file].<b>Supplementary Table S2.</b> The <i>COI</i>-based uncorrected p-distances (mean ± standard error estimate, %) between species in the genus <i>Lamellidens </i>[separate PDF file]<i>.</i><b>Supplementary Table S3.</b> The <i>COI</i>-based uncorrected p-distances (mean ± standard error estimate, %) between species in the genus <i>Trapezidens </i>and <i>Balwantia soleniformis </i>[separate PDF file]<i>.</i><b>Supplementary Table S4.</b> The <i>COI</i>-based uncorrected p-distances (mean ± standard error estimate, %) between species in the genus <i>Indonaia </i>and <i>Pseudoscabies scobina </i>[separate PDF file]<i>.</i><br><b>Cover Image:</b><b><i>Cover image:</i></b> Living topotype of <i>Assamnaia involuta</i> (Hanley, 1856) from a shallow oxbow lake in the Dhansiri River valley, Golaghat, Assam, 26 March 2022. Note unusual bluish brilliance of the periostracum. Photo: J. Sonowal & D. Kardong [separate PDF file].
DOI: 10.6084/m9.figshare.25856014
title: 20240520_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.25856014.v1
title: 20240520_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.5519/qd.avvedtu5
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (281 records)
DOI: 10.15468/dl.vdmegq
title: Occurrence Download

description: A dataset containing 483 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carcinoscorpius rotundicauda (Latreille, 1802)"
 ]
}

 The dataset includes 483 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022373-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6u7ya2
title: Occurrence Download

description: A dataset containing 889 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Canada",
 "Country is Canada"
 ]
 },
 "TaxonKey is one of (Sonchus oleraceus L.)"
 ]
}

 The dataset includes 889 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022374-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gwb8uz
title: Occurrence Download

description: A dataset containing 483 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carcinoscorpius rotundicauda (Latreille, 1802)"
 ]
}

 The dataset includes 483 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022375-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hjx79p
title: Occurrence Download

description: A dataset containing 348344 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Ireland, United Kingdom of Great Britain and Northern Ireland, Portugal, Spain, France, Germany, Belgium, Netherlands, Italy, Greece, Denmark, Norway, Sweden, Finland, Svalbard and Jan Mayen, Estonia, Latvia, Lithuania, Türkiye, Russian Federation, Belarus, Ukraine, Moldova, Republic of, Switzerland, Austria, Poland, Czechia, Hungary, Slovakia, Romania, Bulgaria, Kazakhstan, Armenia, North Macedonia, Albania, Serbia, Montenegro, Kosovo, Bosnia and Herzegovina, Croatia, Slovenia, Cyprus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Vaccinium vitis-idaea L."
 ]
}

 The dataset includes 348344 records from 584 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022368-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rbp98m
title: Occurrence Download

description: A dataset listing the 778 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "TaxonKey is Squamata"
 ]
}

 The dataset's 778 records were derived from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022372-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.s0d4hra0
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (111 records)
DOI: 10.34740/kaggle/dsv/8459427
title: Mahanagar Yatayat Transport Dataset
DOI: 10.15468/dl.2jptzj
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Begonia chloroneura P.Wilkie & Sands"
 ]
}

 The dataset includes 19 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022378-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z2cxs6
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Limacia blumei (Boerl.) Diels"
 ]
}

 The dataset includes 43 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022379-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ngwfqx
title: Occurrence Download

description: A dataset containing 483 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Material citation, Specimen, Occurrence evidence)",
 "TaxonKey is Carcinoscorpius rotundicauda (Latreille, 1802)"
 ]
}

 The dataset includes 483 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022380-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10953626
title: Multispecies IPM for South polar skua and Adelie penguin

description: Code and data for a multispecies IPM (integrated population model) on South polar skua and Adélie penguin.

Please contact me for any questionMail: lise.viollat@protonmail.comTwitter: @LiseViollat

 

Code files : 

- multispeIPM_skua_adelie_CODE.txt: Code of the multispecies IPM (Bugs language)

- Parameter_init.txt : initialisation of the parameters used for the model

Bayesian posterior distributions of the multispecies IPM were approximated with Markov chain Monte Carlo (MCMC) algorithms. Two independent chains MCMC of 30 000 iterations were used, with a burn-in period of 10 000 iterations. Gelman-Rubin convergence diagnostics (Brooks and Gelman, 1998) were below 1.1 for each parameter and the mixing of the chains was satisfactory. The analyses were performed using JAGS (Plummer, 2003; version 4.3.0) and program R (R version 4.0.5).

Data files : 

From 1988 to 2018

- Count_adelie.csv: Number of breeding pairs of Adelie Penguins and Chicks by year

- Count_skua.csv : Number of occupied sites, breeder, non breeder and chicks of South polar Skua by year

- Skua_matrix.txt: CMR data on South polar skua

  CMR code:     0 = non-observed

                1 = seen as non-breeder

                2 = seen as failed breeder

                3 = seen as successful breeder with one fledged chick

                4 = seen as successful breeder with two chicks fledged chicks

                5 = seen in a uncertain state

 The last column is if the individual as been seen dead (-1) or not (1)

- Climat_cova.txt: climatic covariables (Air temperature (AT), sea ice concentration (SIC), sea surface temperature anomalies (ssta),  and number of emperor penguin dead chicks

- N_immigrant: number of new individuals seen for the first time at the colony by year
DOI: 10.15468/dl.3hdvqb
title: Occurrence Download

description: A dataset containing 117 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mya japonica Jay, 1857"
 ]
}

 The dataset includes 117 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022382-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.syk6sz
title: Occurrence Download

description: A dataset containing 135 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptoterantha mayumbensis (Exell) Troupin"
 ]
}

 The dataset includes 135 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022381-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q7hm5y
title: Occurrence Download

description: A dataset containing 1440 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Legnephora moorei (F.Muell.) Miers"
 ]
}

 The dataset includes 1440 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022383-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.32srrz
title: Occurrence Download

description: A dataset containing 367121 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Africa, Asia, Europe)",
 "Issue is one of (Zero coordinate, Coordinate rounded, Geodetic datum invalid, Geodetic datum assumed WGS84, Coordinate reprojected, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate accuracy invalid, Coordinate precision invalid, Coordinate uncertainty meters invalid, Coordinate precision/uncertainty mismatch, Footprint SRS invalid, Footprint WKT mismatch, Footprint WKT invalid, Country coordinate mismatch, Country mismatch, Country invalid, Country derived from coordinates, Continent coordinate mismatch, Continent country mismatch, Continent invalid, Continent derived from country, Continent derived from coordinates, Recorded date mismatch, Recorded date invalid, Recorded date unlikely, Taxon match fuzzy, Taxon match higher rank, Taxon match aggregate, The scientific name ID was not used in backbone matching, The taxon concept ID was not used in backbone matching, The taxon ID was not used in backbone matching, The scientific name ID was not found in the checklist, The taxon concept ID was not found in the checklist, The taxon ID was not found in the checklist, The scientific name differs on the record from that found in the checklist, Taxon match none, The backbone match found using the taxon IDs differs from what would be found if using the scientific names , Depth not metric, Depth unlikely, Depth min max swapped, Depth non numeric, Elevation unlikely, Elevation min max swapped, Elevation not metric, Elevation non numeric, Modified date invalid, Modified date unlikely, Identified date unlikely, Identified date invalid, Basis of record invalid, Type status invalid, Multimedia date invalid, Multimedia URI invalid, References URI invalid, Error during interpretation, Individual count invalid, Individual count conflicts with occurrence status, Occurrence status unparsable, Occurrence status inferred from individual count, ccurrence status inferred from basis of record, Georeferenced date unlikely, Georeferenced date invalid, Ambiguous institution, Ambiguous collection, Institution match none, Collection match none, Institution match fuzzy, Collection match fuzzy, Institution collection mismatch, Possibly on loan, Different owner institution)",
 "OccurrenceStatus is Present",
 "TaxonKey is Suidae"
 ]
}

 The dataset includes 367121 records from 3044 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022376-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.o2q9fv
title: Occurrence Download

description: A dataset containing 26403 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is EWT: African Crane Conservation Programme Sightings"
 ]
}

 The dataset includes 26403 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009096-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mg239y
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dimorphanthera umbellata Wernham"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031255-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rgxjhm
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Elevation 2491.0-9999.0m",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Gynoxys hirsuta Wedd.",
 "Year 1980-2020"
 ]
}

 The dataset includes 30 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0110601-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ryce5d
title: Occurrence Download

description: A dataset containing 16828 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Cook Islands",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 16828 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072618-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.arfqnj
title: Occurrence Download

description: A dataset containing 253 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Amazona imperialis Richmond, 1899"
 ]
}

 The dataset includes 253 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031265-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t7f5fz
title: Occurrence Download

description: A dataset containing 71533 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "DatasetKey is CAS Invertebrate Zoology (IZ)",
 "DatasetKey is NOAA Deep Sea Corals Research and Technology Program",
 "DatasetKey is Rockfish Recruitment and Ecosystem Assessment Survey, Catch Data",
 "DatasetKey is CAS Ichthyology (ICH)",
 "DatasetKey is Biomonitoring of marine vertebrates in Monterey Bay using eDNA metabarcoding"
 ]
 },
 "Geometry POLYGON((-122.17264 36.96284,-122.19681 36.99444,-122.10452 36.54208,-121.97269 36.55797,-122.00345 36.57385,-122.00125 36.60737,-121.95511 36.61795,-121.94412 36.66203,-121.90897 36.63559,-121.8826 36.61443,-121.84964 36.6303,-121.82108 36.71313,-121.80569 36.80467,-121.82108 36.83457,-121.86063 36.90664,-121.90897 36.95582,-121.94852 36.95055,-122.00125 36.93826,-122.09134 36.93299,-122.17264 36.96284))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 71533 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0091604-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wh8naq
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gigartina clavifera J.Agardh"
 ]
}

 The dataset includes 46 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009097-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ghem4h
title: Occurrence Download

description: A dataset containing 563 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tricoryne anceps R.Br."
 ]
}

 The dataset includes 563 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0131917-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bas43d
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eberhardtia tonkinensis Lecomte"
 ]
}

 The dataset includes 99 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031189-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wayfty
title: Occurrence Download

description: A dataset containing 41321 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Congo, Democratic Republic of the",
 "TaxonKey is Amphibia"
 ]
}

 The dataset includes 41321 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0118582-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e3xse5
title: Occurrence Download

description: A dataset containing 2795 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Euonymus fortunei (Turcz.) Hand.-Mazz."
 ]
}

 The dataset includes 2795 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086324-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.