cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/dymywvwf7p
title: Measuring GDP in Bangladesh and its Challenges

description: GDP is important because it gives information about the size of the economy and how an economy is performing. It counts all of the output generated within the borders of a nation. One of the three approaches to calculating GDP involves adding up all spending on final goods and services in an economy. Bangladesh Bureau of Statistics (BBS) estimates Bangladesh's nominal and real GDP yearly. The government budget and Bangladesh's poverty-reduction programs must be funded long-term, non-inflationary to maintain macroeconomic stability. Iterative methods are used to develop and implement a country's macroeconomic policy and poverty reduction plan. To overcome the challenges of GDP, focusing on well-being economics with a well-being framework consisting of health, environment, work, physical safety, economic safety, and political freedom is essential.
DOI: 10.17632/vmjphkthn8
title: Dataset accompanying PhD thesis: Who benefits most? Evaluating and understanding clinical and biomechanical outcomes following structured education and exercise therapy interventions for people with knee osteoarthritis

description: This statistical code was generated for the data analysis of three research studies as part of a PhD thesis titled: Who benefits most? Evaluating and understanding clinical and biomechanical outcomes following structured education and exercise therapy interventions for people with knee osteoarthritis.

Study 2 (Chapter 5) was a methods paper titled " A statistical model of agreement in subjective rating scales—an exploration of the Kellgren-Lawrence radiological grading system." This paper outlines a workflow for a statistical modelling approach for defining radiological knee OA severity and rater agreement from the Kellgren-Lawrence (KL) system. The analysis utilises the cumulative-link model as implemented in 'brms' (https://doi.org/10.1177/2515245918823199). The data generated were used in study 3 and 4. 

Study 3 (Chapter 6) was a clinical outcomes study titled " The relationship between radiological OA severity or body weight and outcomes following a structured education and exercise therapy program (GLA:D®) for people with knee osteoarthritis." This pre-post study of 33 participants with knee OA evaluated the relationship between a person's body weight or radiological knee compartment severity and short-term outcomes following the GLA:D® program. The data and workflow for this study have been provided which includes the R code for all models and graphics. 

Study 4 (Chapter 7) was a biomechanical study titled " Knee joint moment changes during walking and chair-rise and the relationship to radiological knee OA severity and body weight following a structured education and exercise intervention (GLA:D®) for knee osteoarthritis". This pre-post study of 31 participants with knee OA evaluated knee joint moment changes during walking and chair-rise and the relationship to radiological knee OA severity and body weight following the GLA:D® intervention. The documents provided includes the preprocessing workflow that imports the original csv files generated from VICON and the code to generate the secondary parameters (such as peak values and total areas under the curve).
DOI: 10.6084/m9.figshare.14481696.v1
title: Gene database of Mus musculus

description: The laboratory mouse (<i>Mus musculus</i>) is a commonly used model organism for human diseases. This work provides some foundational information about the genetic repertoire of <i>M. musculus</i> by parsing its annotated genome sequence via an in-house MATLAB genome analysis software. Comprising gene name, gene function, and gene sequence of all genes in the genome of the model organism, this database should find use in a variety of workflows for understanding genetic underpinnings of particular phenotypes in mouse.
DOI: 10.6084/m9.figshare.15109575.v1
title: Supplemental sequence data for Nir, Amador et al., 2021

description: Collection of plant sequences from public depositories used in phylogenetic analysis of BASL (Arabidopsis At5g60080).
DOI: 10.6084/m9.figshare.25293304.v1
title: Source Data for Chirality-induced quantum nonreciprocity

description: Source Data for Figures and Extended Data Figures in Chirality-induced quantum nonreciprocity
DOI: 10.6084/m9.figshare.28327424.v1
title: Alignment data and phylogenetic tree files for Russula subsection Xerampelinae

description: Alignment files in nexus format for the ITS, LSU, RPB2, TEF1, and ITS and multigene tree files in treefile format from the paper: <b><i>Russula nuda</i></b><b>, a new species of</b><b><i> Russula </i></b><b>subsect.</b><b><i> Xerampelinae </i></b><b>(</b><b><i>Russulaceae</i></b><b>) from Japan.</b>
DOI: 10.17632/n245scjzk4
title: Unique list of clear ICME- and SIR/CIR- related geomagnetic storm events from the maximum of 24 solar cycle (Nov 2012-Oct 2014)

description: A unique database of geomagnetic storm events generated by SIR/CIRs separately from those, which were generated by ICMEs for the time interval Nov 2012-Sept 2015 (maximum of the 24th solar cycle) was created (will be available later).
Beside the full list, which contains 103 ICME and 82 SIR/CIR-related geomagnetic storm event, we selected from these two list the clear storm events (42 ICME and 32 SIR/CIR). The lists can be downloaded here in .xls format. 
The clear ICME- and SIR/CIR related storm event list was used in the following publication: "Berényi et. al (2023), Impact of the ICME- and SIR/CIR-driven geomagnetic storms on the ionosphere over Hungary"

Please cite this list properly, when you use it for your analysis.

The following data were used to create the databases (for website links see below):
1. SC (Sudden Commencement) times were from GFZ Potsdam, Germany and ISGI (In-ternational Service of Geomagnetic Indices), Spain 
2. ICME source dates and ICME comments were from different NASA websites.
3. ACE/WIND shock dates were from three different websites. Also we used the unique list of our co-authors, called Dalya & Opitz ACE ICME start and end dates (available as: Dalya, Zsuzsanna; Opitz, Andrea; Biro, Nikolett (2023), “Duration of ICME signatures in in-situ data from several space probes for the time interval of 2004-2021”, Mendeley Data, V1, doi: 10.17632/4zwbp8k7cr.1).
4. CIR, HSS catalogues were also used for the creation of our unique list.
5. Solar and geomagnetic indexes: The Dst-, AE- index and Dstmin times.
DOI: 10.6084/m9.figshare.16650521.v1
title: Additional file 1 of Description of breed ancestry and genetic health traits in arctic sled dog breeds

description: Additional file 1: Supplemental Table 1. The distribution of dogs within Arctic sledding populations belonging to various haplogroups and haplotypes. The haplogroups identified by Embark for each sledding population are denoted under the Haplogroup column. Population haplotypes within each haplogroup are adjacent to the named haplogroup.
DOI: 10.6084/m9.figshare.29145266.v1
title: Understanding Trust in Climate Change Communication

description: The anonymized datasets, code, and key results from this study
DOI: 10.17632/2svn4wjsr7
title: ABC+D

description: The current codes implement full-dimensional non-reactive state-to-state scattering dynamics between a closed-shell triatomic molecule and a closed-shell atom by using time-independent quantum mechanical method. Two approximated approaches are available respectively in two folders: 1) K-truncated scheme; 2) Extended Coupled-States (ECS) approximation.
DOI: 10.17632/bwrr6zypcj
title: Student Learning Preferences 

description: This is a student learning style dataset based on VARK questioner.
DOI: 10.6084/m9.figshare.24347140.v1
title: Comparison of dry and wet trapping for diet analysis of carabid beetles

description: This manuscript has been accepted for publication in the journal Entomologia Experimentalis et Applicata.The study focuses on the potential difference between dry and wet pitfall traps to collect carabid beetles for diet analysese. Dry pitfall traps are commonly assumed to be better for DNA preservation than traps using killing agents. To test this, we compared the trapping efficiency of two pitfall types, dry vs. with brine, in oilseed rape fields in France, as well as the conservation of prey DNA contained in the digestive tract of two common beetle species, Nebria salina and Calathus fuscipes. Prey DNA was amplified differentially, but sequencing was not influenced by trap type. Also information on the carabids’ diet in autumn is provided.
DOI: 10.6084/m9.figshare.26496586.v2
title: [dataset] systemic lupus erythematosus and cervical artery dissection

description: Minimal, aggregate, de-identified datasets used for our primary outcome, cumulative incidence, and propensity score density plots
DOI: 10.6084/m9.figshare.28297091.v1
title: Molecular species delimitation and historical biogeography among species of the genus Partamona (Hymenoptera: Apidae: Meliponini), with emphasis on the Eastern group from South America

description: Data used in the paper " Molecular species delimitation and divergence time among species of the genus Partamona (Hymenoptera: Apidae: Meliponini), with emphasis on the Eastern group from South America" (htps://doi.org/10.1093/zoolinnean/zlaf006) includes the following datasets: the alignment matrix in FASTA format for each molecular marker (our own dataset and our dataset plus sequences from genbank), the concatenated alignment matrix in NEXUS format, the final calibrated phylogenetic tree in “.tre” format, ".log" file to check the convergence of the MCMC and estimated parameters, and the R script used for analyses with the SPIDER package (Brown et al., 2012).
DOI: 10.6084/m9.figshare.15152388.v4
title: Phylogenetic tree of metagenomic assembled genomes (MAGs)

description: The tree was generated using the Genome Taxonomy Database Toolkit (GTDB-Tk).
DOI: 10.6084/m9.figshare.26083966.v1
title: From Code to Life: Transforming Computer Algorithms into DNA

description: After obtaining the desired sequence, DNA synthesis is essential to produce the H-Bot in physical form. This process can be efficiently managed through a closed control loop system. The system comprises four vials containing dNTPs: deoxyadenosine triphosphate (dATP), deoxyguanosine triphosphate (dGTP), deoxythymidine triphosphate (dTTP), and deoxycytidine triphosphate (dCTP). Each vial is equipped with a micropipette for precise handling.During synthesis, the first nitrogenous base displayed on screen triggers a robotic arm attached to a CDS micropipette to dispense a specified concentration of the corresponding dNTP. This process repeats until 23 separate DNA strands are synthesized. The resulting physical DNA strand is termed "Artificial Single-Stranded DNA" or "assDNA" strand for short. Read more ...Garg, R. , Vyas, A. , Khan, A. , Tariq, M. (2024), 'Codes beyond Bits and Bytes: A Blueprint for Artificial Life', World Academy of Science, Engineering and Technology, Open Science Index 213, International Journal of Biotechnology and Bioengineering, 18(9), 114 - 126.
DOI: 10.6084/m9.figshare.28531877.v1
title: SCG datapack - updated

description: A quick update of the SCG datapack for anvi'o dev version (March 2025).
DOI: 10.6084/m9.figshare.8863529.v1
title: Supplementary Material for: Positive Treatment Expectancies Reduce Clinical Pain and Perceived Limitations in Movement Ability Despite Increased Experimental Pain: A Randomized Controlled Trial on Sham Opioid Infusion in Patients with Chronic Back Pain

description: <b><i>Background:</i></b> Increasing evidence for the efficacy of analgesic placebo effects in laboratory studies with healthy persons raises the question whether placebos could be used to improve the treatment of pain patients. Expectancies play a central role in shaping analgesic placebo but also nocebo effects. <b><i>Objectives:</i></b> We investigated to what extent a sham opioid infusion (saline solution) produces sustained clinically relevant placebo and nocebo effects in chronic back pain patients. <b><i>Methods:</i></b> Fifty-nine patients received the sham opioid infusion applied via a large drain dressing and were compared to 14 control patients without intervention (natural history, NH) while experimental pain stimuli were applied. All subjects were told that the infusion would decrease pain although in rare cases pain increase would be possible (induction of expectancy). In addition, conditioning was introduced where the participants either experienced a decrease in experimental pain (<i>n</i> = 17; placebo conditioning), an increase (<i>n</i> = 21; nocebo conditioning), or no change (<i>n</i> = 21, no conditioning). <b><i>Results:</i></b> Compared to the NH group, all infusion groups showed positive treatment expectancies and significantly (<i>p</i> &lt; 0.001) reduced clinical back pain (primary outcome) and pain-related disability (secondary outcome, assessed by self-reported functional capacity and perceived impairment of mobility). Even the nocebo conditioned group experiencing increased experimental pain developed positive treatment expectancies followed by reduced pain experience. Positive treatment expectancies and relief in clinical back pain were significantly positively correlated (<i>r</i> = 0.72, <i>p</i> &lt; 0.01). <b><i>Conclusions:</i></b> These findings suggest that it may be beneficial to explicitly shape and integrate treatment expectancies into clinical pain management.
DOI: 10.6084/m9.figshare.24962130.v1
title: Supplementary Material for: Association of low birth weight with the risk of childhood stunting in low and middle-income countries: A systematic review and meta-analysis

description: Medicine
DOI: 10.6084/m9.figshare.25724079.v1
title: Genome and annotation files for Physcomitrellopsis africana

description: The first draft genome of the rare South African endemic moss Physcomitrellopsis africana is presented. The 414 Mb assembly contains 22,925 genes, including two uniquely horizontally transferred genes, but lacks 97 of the microbial genes previously identified in the closely related model, Physcomitrium patens - highlighting the dynamic role of HGT in the evolution of these moss genomes and loss. This study presents best practices for contamination detection and new insights into HGT identification.
DOI: 10.6084/m9.figshare.28677203.v1
title: cck8.xlsxIntegrated Bioprinting of Trachea-Like Structures Based on Tissue-Specific bioink

description: database for artical uploaded :"Integrated Bioprinting of Trachea-Like Structures Based on Tissue-Specific bioink"
DOI: 10.6084/m9.figshare.29117579.v1
title: datasets of jrs.zip

description: Datasets of functional trait composition, biomass and grazing intensity for papr"Unravelling Ecosystem Function Responses to Grazing Intensity through UAV-based Hyperspectral Analysis"
DOI: 10.7294/26397688.v1
title: Arthropod diversity in shallow subterranean habitats of the Appalachian Mountains, morphospecies images, Part II

description: Subterranean arthropods are important components of soils and contribute essential food-web functions and other ecosystem services, however, their diversity and community composition has scarcely been assessed. Subterranean pitfall traps are a commonly used method for sampling soil habitats in Europe but have never been widely implemented in the Americas. We used subterranean pitfall traps to sample previously unsurveyed arthropod communities in southwestern Virginia, U.S. Traps were placed in shallow subterranean habitats (SSHs), underground habitats close to the surface where light does not penetrate, and more specifically at the interface between the soil and underlying milieu souterrain superficiel—a microhabitat consisting of the air-filled interstitial spaces between rocks (abbreviated MSS). In total, 2,260 arthropod specimens were collected constituting 345 morphospecies from 8 classes, 33 orders, and 94 families. A region of the mitochondrial cytochrome c oxidase subunit I (COI) gene was amplified and sequenced, and objective sequence clustering of 3% was used to establish molecular operational taxonomic units (mOTUs) to infer observed species richness. In all, 272 COI barcodes representing 256 mOTUs were documented for rare soil-dwelling arthropod taxa and are published to build a molecular library for future research in this system. This work is the first taxonomically extensive survey of North American soil-dwelling arthropods greater than 10 cm below the soil surface.
DOI: 10.17632/2hsrzh52hw
title: The Joe Rogan Experience - Podcast Episode Data

description: This dataset contains all podcast episodes as of October 2021 of The Joe Rogan Experience from Youtube and Spotify
DOI: 10.17633/rd.brunel.4868351.v1
title: Isabelle files for verification of a hybrid transactional mutex lock

description: This page contains Isabelle theory files for proving correctness of hybrid transactional memory in a modular fashion, leveraging the TMS2 specification and Lesani et al's results, these proofs establish opacity of two novel hybrid versions of the Dalessandro et al.'s transactional mutex lock . Modularisation is based on a concept we refer to as open I/O automata. Download the theory files here. The zip file consists of two folders: <i> naive</i>, a simple implementation and proof, where the fast and slow path both synchronise on the same global variable, and <i> 2-Counter</i>, an improved implementation and proof, where the slow- and fast-path transactions synchronise on different variables, allowing more concurrency. The proofs require Isabelle 2016. If you encounter a problem loading Seq.thy, please make sure imports is set to "../HOLCF". This is a problem with the new Isabelle distribution.
DOI: 10.6084/m9.figshare.24427300.v1
title: Data for Distribution and abundance of solar wind-derived water in Moon’s subsurface and their implications

description: This file contains the data of H abundances and H isotopes of drill core soils.
DOI: 10.6084/m9.figshare.25734297.v1
title: Suspended sediment and POC data.xlsx

description: River SSC and POC data in the Third Pole
DOI: 10.6084/m9.figshare.25770057.v8
title: Soil 15N along aridity gradient Mao et al., 2024

description: Dataset of the article titled "Aridity threshold for alpine soil nitrogen isotope signature and ecosystem nitrogen cycling"
DOI: 10.6084/m9.figshare.28433162.v2
title: Supplementary Materials for Manuscript

description: Clusterin is one of the proteins responsible for cancer chemoresistance, a prevalent issue in treatment. In this study, hot spot analysis showed a potential main ligand binding site and an allosteric site for facilitating protein-protein interactions. Potential inhibitors were designed through fragment-based drug discovery. Commercially available fragment libraries were screened for anti-cancer activity and the rule of three then docked. The highest affinity fragment underwent fragment growing. Resulting candidate drugs were docked and screened for toxicity. Qualitative structure-activity relationship analysis revealed chemical size and complexity being major contributors to binding affinity. Candidates retaining the base structure provided both anticancer potential and additional interactions with residues due to the increase in size and complexity. ADME filtering was conducted to filter out for general cancer cell application, the most favourable resulting in a top 1 final candidate drug precursor. Molecular dynamic simulations revealed good binding affinity in comparison with the reference ligand, highly suggesting potential for further optimization such as facilitating protein-protein interactions or as a drug delivery medium. Results of this study presents potential solutions to dealing with clusterin induced chemoresistance as well as other diseases that heavily involve clusterin.
DOI: 10.6084/m9.figshare.5121052.v1
title: Supplementary Material for: Hemifacial Spasms Provoked by Ipsilateral Gaze

description: Medicine
DOI: 10.6084/m9.figshare.5954329.v1
title: Circulation Diagram of the west Antarctic Peninsula (wAP) continental shelf

description: Figures from Moffat C, Meredith M. 2018 Shelf–ocean exchange and hydrography west of the Antarctic Peninsula: a review. Phil. Trans. R. Soc. A 376: 20170164. http://dx.doi.org/10.1098/rsta.2017.0164<br>Feel free to use and modify as you wish. If you need to cite it, use the manuscript above.
DOI: 10.6084/m9.figshare.5971213.v1
title: SnPM data DMD and TD

description: This dataset consists of the data used in the paper:Gait deviations in Duchenne muscular dystrophy - part 2. Statistical non-parametric mapping to analyze gait deviations in children with Duchenne muscular dystrophy.
DOI: 10.17632/jcd93vd3d4
title: Urinary metabolomics TCMR

description: We conducted a targeted metabolite profiling of urines samples from 193 kidney transplant recipients, collected three months after transplantation at the time of protocol biopsy. This was done using Liquid Chromatography coupled to tandem Mass Spectrometry with SeQuant ZIC-pHilic columns, which permit the detection of complex hydrophilic and polar compounds. We proceeded to compare the urine metabolome of KTR according to the presence of T-cell mediated rejection according the Banff classification (n=20).
Urines were centrifugated 5 min at 4000 g and the supernatant was stored at -80°C until analyses. After addition of an extraction solution made of 50% methanol, 30% acetonitrile, and 20% water 33 (1 mL/1.106 cells or 500 l for 20 l urine), the samples were vortexed for 5 min at 4°C, and then centrifuged at 16,000 g for 15 min at 4°C. The supernatants were collected and separated by liquid chromatography–mass spectrometry using SeQuant ZIC-pHilic column (Millipore). The aqueous mobile-phase solvent was 20 mM ammonium carbonate plus 0.1% ammonium hydroxide solution and the organic mobile phase was acetonitrile. The metabolites were separated over a linear gradient from 80% organic to 80% aqueous for 15 min. The column temperature was 50°C and the flow rate was 200 μl/min. The metabolites were detected across a mass range of 75-1,000 m/z using the Q-Exactive Plus mass spectrometer at a resolution of 35,000 (at 200 m/z) with electrospray ionization and polarity switching mode. Lock masses were used to insure mass accuracy below 5 ppm. The peak areas of different metabolites were determined using Thermo TraceFinder software using the exact mass of the singly charged ion and known retention time on the HPLC column. Our metabolomics analyses are focused on small polar compounds in central carbon metabolism. We applied an established and largely referenced method for sample extraction and LC-MS analyses using pHILIC HPLC column for polar metabolites separation 33. Notably, we used the same extraction solution for cells and urine samples. As a part of the routine analytical pipeline, we apply the recommendations of the metabolomics Quality Assurance and quality Control Consortium (mQACC). The routine quality controls include regular equipment maintenance (Thermo), the use of standard operating procedures for sample extraction, storage and analyses. General practices also include weekly test runs to assure system stability and quality of runs. Regarding the QCs in relation to this study, we used (1) pooled interstudy QC, (2) process and extraction blanks, (3) system stability blanks, (4) solvents blanks, (5) long-term reference standard inter-laboratory QC mix to ensure system stability and (6) the samples were blinded and loaded in randomized order. The analyses of pooled samples QC showed no significant difference in metabolites levels between QCs.