cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0102417.10fu
title: SH0102417.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive110706.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive110706.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0102418.10fu
title: SH0102418.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive110707.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive110707.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0102419.10fu
title: SH0102419.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive110708.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive110708.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0102420.10fu
title: SH0102420.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5517/ccdc.csd.cc2n8r4v
title: CCDC 2451267: Experimental Crystal Structure Determination

description: Related Article: El Mustafa Ouaaka, Mustapha Aazza, El Mostafa Khechoubi, Mahmoud Ettakni, Thierry Maris|2025|J.Phys.Chem.Solids|210||doi:10.1016/j.jpcs.2025.113329
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13145/bacdive110709.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive110709.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive110710.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive110710.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0102421.10fu
title: SH0102421.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive110711.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive110711.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0102422.10fu
title: SH0102422.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.c.3631142_d7
title: Additional file 9: Table S7. of Transcriptome sequencing of gingival biopsies from chronic periodontitis patients reveals novel gene expression and splicing patterns

description: The full list of differential alternative splicing events in healthy and periodontitis tissues. This excel file contains the full list of exons which were included or excluded in periodontitis. (XLSX 32Â kb)
DOI: 10.6084/m9.figshare.c.3631289_d5
title: Additional file 4: of Precise mapping of the transcription start sites of human microRNAs using DROSHA knockout cells

description: List of pri-miRNAs analyzed in this study. From the list of authentic miRNAs, which were established previously [20], the list of pri-miRNAs was generated based on the genomic locations of mature miRNAs. The pri-miRNAs were divided into two groups (A and B) depending on their overlap with protein-coding genes. By inspecting the RNA-seq data, the signal intensity was annotated as either ‘High’, ‘Low’, or ‘No’ (see Methods). (A) For intergenic pri-miRNAs with no overlap with protein-coding genes, the enrichment of RNA signals in the DROSHA knockout cells, compared to those in wild-type cells, was determined. Thirty-four pri-miRNAs that met our criteria are shown with bold letters. For the clustered miRNAs among the pri-miRNAs analyzed by RACE, the evidence of co-transcription was indicated with citations for 11 out of 20 clustered miRNAs. For six pri-miRNAs, we identified the expressed sequence tags (ESTs) with sequences spanning all miRNA members of each cluster and included the GenBank IDs of representative ESTs. For the remaining 3 miRNA clusters, we performed PCR experiments to confirm that the transcripts spanning all miRNA members are increased in the cDNA made from DROSHA knockout cells compared to that from wild-type cells. We included the results into Additional file 5. (B) For intronic miRNAs, which reside inside the introns of protein-coding genes, the accumulation of RNA signals at the miRNA-containing intron in the DROSHA knockout cells, compared to that in wild-type cells, was determined. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3631289_d6
title: Additional file 10: of Precise mapping of the transcription start sites of human microRNAs using DROSHA knockout cells

description: The fold change values (DROSHA knockout / wild-type) of read counts for each exonic/intronic region of host genes of intronic miRNAs. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3631289_d8
title: Additional file 12: of Precise mapping of the transcription start sites of human microRNAs using DROSHA knockout cells

description: The sequences of primers used for RACE experiments. The insets depict primer-binding regions, transcription start sites of pri-miRNAs analyzed from RACE experiments, and transcription termination sites expected from RNA-seq signals. The frequencies of 5â ˛ RACE clones were also included. (XLSX 383Â kb)
DOI: 10.6084/m9.figshare.c.3631301_d1
title: Additional file 2: Table S1. of Developmental phenotype in Phelan-McDermid (22q13.3 deletion) syndrome: a systematic and prospective study in 34 children

description: Bayley-III-NL developmental age-equivalents (DAEs) and developmental quotients (DQs) for cognition separated by gender. (XLS 18.0 kb)
DOI: 10.6084/m9.figshare.c.3631265_d9
title: Additional file 3: Table S2. of Associations of genetic risk scores based on adult adiposity pathways with childhood growth and adiposity measures

description: List of SNPs included per risk score for each biological category. (XLS 34Â kb)
DOI: 10.6084/m9.figshare.c.3631289_d10
title: Additional file 7: of Precise mapping of the transcription start sites of human microRNAs using DROSHA knockout cells

description: List of transcription factors that may regulate the transcription of pri-miRNAs. Using the ChIP-seq data of 161 transcription factors produced by the ENCODE project [21], the binding region of each transcription factor was compared with the promoter regions of miRNAs. The transcription factors with binding sites in the promoters of miRNAs are summarized. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3631265_d10
title: Additional file 12: Table S9. of Associations of genetic risk scores based on adult adiposity pathways with childhood growth and adiposity measures

description: Pathway analysis using Ingenuity Pathway Analysis software. (XLS 171Â kb)
DOI: 10.6084/m9.figshare.c.3631445_d1
title: Additional file 3: of Transcriptomic analysis reveals sex-specific differences in the expression of Dcl1 and Fis1 genes in the radio-adaptive response of thymocytes to TRP53-mediated apoptosis

description: Listing of primers used in the quantitative real-time RT-PCR analysis. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3631445_d2
title: Additional file 1: of Transcriptomic analysis reveals sex-specific differences in the expression of Dcl1 and Fis1 genes in the radio-adaptive response of thymocytes to TRP53-mediated apoptosis

description: Listing of genes involved in apoptosis included in the Agilent Mouse Gene Expression G3 8x60K microarray. (XLSX 420 kb)
DOI: 10.6084/m9.figshare.c.3631457_d1
title: Additional file 1: of Reproductive factors and risk of mortality in the European Prospective Investigation into Cancer and Nutrition; a cohort study

description: List of all of the local ethics committees for the EPIC study. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3631445_d3
title: Additional file 2: of Transcriptomic analysis reveals sex-specific differences in the expression of Dcl1 and Fis1 genes in the radio-adaptive response of thymocytes to TRP53-mediated apoptosis

description: Listing of GO-IDs related with apoptosis in the Gene Ontology database. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.c.3631460_d1
title: Additional file 1: of Gender relations, sexual behaviour, and risk of contracting sexually transmitted infections among women in union in Uganda

description: Dataset. (SAV 40698 kb)
DOI: 10.6084/m9.figshare.c.3631454_d2
title: Additional file 1: of Resolving complex structural genomic rearrangements using a randomized approach

description: Contains Supplemental Table 1 outlining the type and number of SVs included in each simulated genome and the stratified results for each algorithm. (XLSX 111 kb)
DOI: 10.6084/m9.figshare.c.3631466_d1
title: Additional file 3: of Trajectories of eating behaviors in a nationally representative cohort of U.S. adolescents during the transition to young adulthood

description: “Estimates (β ± SE) from linear generalized estimating equations predicting retrospective and prospective 1-year body mass index (BMI, kg/m 2 ) change,” contains results from models examining longitudinal associations of eating behaviors with change in BMI. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3631589_d1
title: Additional file 1: of 5-azacytidine induces transcriptome changes in Escherichia coli via DNA methylation-dependent and DNA methylation-independent mechanisms

description: Microarray fold-changes, p values, and false discovery rates (FDR) for all E. coli genes from logarithmic phase 5-azaC treated cells. Fold-change is expression in the presence of 5-azaC divided by expression in the absence of 5-azaC and is log2 transformed. P values are from one sample t-tests, and the FDR is the Benjamini-Hochberg false discovery rate. (CSV 153Â kb)
DOI: 10.5281/zenodo.14456255
title: Machine Learning-Based Grading of Engine Health for High-Performance Vehicles

description: Dataset and code for Machine Learning-Based Grading of Engine Health for High-Performance Vehicles
DOI: 10.5281/zenodo.14456256
title: Machine Learning-Based Grading of Engine Health for High-Performance Vehicles

description: Dataset and code for Machine Learning-Based Grading of Engine Health for High-Performance Vehicles
DOI: 10.6084/m9.figshare.c.3631607_d1
title: Additional file 1: of First case report of inherited Rubinstein-Taybi syndrome associated with a novel EP300 variant

description: Phenotype table. Phenotype found in patient and her mother. (XLS 26 kb)
DOI: 10.6084/m9.figshare.c.3631589_d3
title: Additional file 2: of 5-azacytidine induces transcriptome changes in Escherichia coli via DNA methylation-dependent and DNA methylation-independent mechanisms

description: Microarray fold-changes, p values, and false discovery rates (FDR) for all E. coli genes from early stationary phase 5-azaC treated cells. Fold-change is expression in the presence of 5-azaC divided by expression in the absence of 5-azaC and is log2 transformed. P values are from one sample t-tests, and the FDR is the Benjamini-Hochberg false discovery rate. (CSV 153Â kb)
DOI: 10.5281/zenodo.14380132
title: Dataset for Machine Learning-Based Grading of Engine Health for High-Performance Vehicles

description: Dataset containing the training, validation, and test .csv files
DOI: 10.5281/zenodo.14380133
title: Dataset for Machine Learning-Based Grading of Engine Health for High-Performance Vehicles

description: Dataset containing the training, validation, and test .csv files
DOI: 10.6084/m9.figshare.c.3631730_d1
title: Additional file 1: of Experimental detection of short regulatory motifs in eukaryotic proteins: tips for good practice as well as for bad

description: List of experiments used in SLiM discovery as recorded for experimental instances in the ELM database. Experimental methods have been grouped by type of motif class (LIG: ligand binding, MOD: modification, TRG: targeting, DOC: docking, DEG: degradation, CLV: cleavage) and sorted by number of instances annotated with this particular method in the ELM database. PSI-MI [78] IDs for experimental methods are given, as are the method classifications. (XLS 59Â kb)
DOI: 10.6084/m9.figshare.c.3631700_d7
title: Additional file 5: of Gene overlapping and size constraints in the viral world

description: ViralZone data. Contains all the taxonomical and genomic data we have used in this study, as taken from ViralZone and its references to NCBI. Rename this file to â  viralzone.csvâ   in order to load it through our Python framework. (CSV 7614 kb)
DOI: 10.6084/m9.figshare.c.3631700_d8
title: Additional file 7: of Gene overlapping and size constraints in the viral world

description: VIPERdb raw data. Contains structural data about the capsids of icosahedral viral genera, as taken from VIPERdb without any further processing. Rename this file to â  viperdb_raw.csvâ   in order to load it through our Python framework. (CSV 63 kb)
DOI: 10.6084/m9.figshare.c.3631823_d7
title: Additional file 9: of Genome-wide identification and functional analysis of lincRNAs acting as miRNA targets or decoys in maize

description: The nodes and edges information of miRNA-lincRNA networks. (XLS 31Â kb)
DOI: 10.6084/m9.figshare.c.3631847_d1
title: Additional file 7: of Changes in Lolium perenne transcriptome during cold acclimation in two genotypes adapted to different climatic conditions

description: Major biological processes of differentially expressed transcripts in ‘Veyo’ genotype of perennial ryegrass ( Lolium perenne L.) during cold acclimation identified by the DAVID tool. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3631847_d2
title: Additional file 10: of Changes in Lolium perenne transcriptome during cold acclimation in two genotypes adapted to different climatic conditions

description: Major molecular functions of differentially expressed transcripts in ‘Falster’ genotype of perennial ryegrass ( Lolium perenne L.) during cold acclimation identified by the DAVID tool. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3631823_d8
title: Additional file 11: of Genome-wide identification and functional analysis of lincRNAs acting as miRNA targets or decoys in maize

description: The potential function of lincRNAs as miRNA targets. (XLS 5756Â kb)
DOI: 10.6084/m9.figshare.c.3631859_d3
title: Additional file 2: Workflow S1. of A novel RNAseqâ  assisted method for MHC class I genotyping in a non-model species applied to a lethal vaccination-induced alloimmune disease

description: Description of bioinformatic data analysis of transcriptomic RNAseq data for MHC class I genotyping. Bioinformatic skripts including codes and options for preprocessing and data analysis of fastq files from RNAseq transcriptome analysis for MHC class I allele identification and genotyping. (ZIP 9 kb)
DOI: 10.6084/m9.figshare.c.3631847_d3
title: Additional file 13: of Changes in Lolium perenne transcriptome during cold acclimation in two genotypes adapted to different climatic conditions

description: Major functional domains of differentially expressed proteins in ‘Veyo’ genotype of perennial ryegrass ( Lolium perenne L.) during cold acclimation identified by the DAVID tool. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3631871_d2
title: MOESM2 of Spatial profiles of markers of glycolysis, mitochondria, and proton pumps in a rat glioma suggest coordinated programming for proliferation

description: Additional file 2: Numerical tabulation of profiles of V-ATPase and GAPDH after normalization and alignment
DOI: 10.6084/m9.figshare.c.3631823_d10
title: Additional file 15: of Genome-wide identification and functional analysis of lincRNAs acting as miRNA targets or decoys in maize

description: The potential function of lincRNAs as miRNA decoys. (XLS 1841Â kb)
DOI: 10.6084/m9.figshare.c.3631847_d4
title: Additional file 5: of Changes in Lolium perenne transcriptome during cold acclimation in two genotypes adapted to different climatic conditions

description: Differentially expressed transcripts in ‘Falster’ genotype of perennial ryegrass ( Lolium perenne L.) during cold acclimation. (XLSX 375 kb)
DOI: 10.6084/m9.figshare.c.3631823_d11
title: Additional file 19: of Genome-wide identification and functional analysis of lincRNAs acting as miRNA targets or decoys in maize

description: The expression of drought-stressed lincRNAs as miRNA targets or decoys. (XLS 22Â kb)