cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zq8t37
title: Occurrence Download

description: A dataset containing 560 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Eleutherodactylus cystignathoides (Cope, 1877))"
 ]
}

 The dataset includes 560 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025594-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/2pjj9k3m9d
title: Aerden et al. 2022 (Tectonics) - Supplemental Data set 2

description: MICROSTRUCTURAL DATA: 33 interactive stereoplots (1 per sample) showing microstructural orientation data corresponding to Fig. 4 of  Tectonics article "Refined tectonic evolution of the Betic-Rif orogen through integrated 3-D microstructural analysis and Sm-Nd dating of garnet porphyroblasts"
Authors: Domingo G.A.M. Aerden, Thomas P. Farrell, Ethan F. Baxter, Emily M. Stewart, Alejandro Ruiz-Fuentes, Mohamed Bouybaouene
The stereoplots were made with the program 'Stereonet' of R. Allmendinger available at https://www.rickallmendinger.net/
DOI: 10.17632/7v3rsntjfx
title: Structural basis of mRNA binding by the human FERRY Rab5 effector complex

description: The pentameric FERRY Rab5 effector complex is a new molecular link between mRNA and early endosomes in mRNA intracellular distribution. Here, we determine the cryo-EM structure of human FERRY. It reveals a unique clamp-like architecture that bears no resemblance to any known structure of Rab effectors. A combination of functional and mutational studies reveals that while the Fy-2 C-terminal coiled-coil acts as binding region for Fy-1/3 and Rab5, both coiled-coils and Fy-5 concur to bind mRNA. Mutations causing truncations of Fy-2 in patients with neurological disorders impair Rab5 binding or FERRY complex assembly. Thus, Fy-2 serves as a binding hub connecting all five complex subunits and mediating the binding to mRNA and early endosomes via Rab5. Our study provides novel mechanistic insights into long-distance mRNA transport and demonstrates that the particular architecture of FERRY is closely linked to a novel mode of RNA binding, involving coiled-coil domains.
DOI: 10.17632/hvrffb3hnt
title: LDHU3_16.0360

description: Proteasome 26S non-ATPase subunit 9; Leishmania donovani (HU3 strain)
DOI: 10.17632/k83mwptcz5
title: Measured Data

description: Measured Data
DOI: 10.17632/mm824csy77
title: Dataset for heritable effects on caste determination and colony-level sex allocation in termites under field conditions

description: The data sheet “Fostering experiment” shows the caste fate of larvae developed in natal and foster colonies in the subterranean termite Reticulitermes speratus. The number of individuals of each sex and caste are shown. 

The data sheet “Genotype colony GA” shows the genotype of each individual in colonies with an even sex ratio in nymphs. Numbers in each cell indicate the alleles of the individual at each of the four microsatellite loci. PK: primary king; SQ: secondary queen; MW: male first-instar worker (W1); FW: female first-instar worker (W1); MN: male first-instar nymph (N1); FN: female first-instar nymph (N1).

The data sheet “Genotype colony GB” shows the genotype of each individual in colonies with a female-biased sex ratio in nymphs. Numbers in each cell indicate the alleles of the individual at each of the four microsatellite loci. PK: primary king; SQ: secondary queen; MW: male first-instar worker (W1); FW: female first-instar worker (W1); MN: male first-instar nymph (N1); FN: female first-instar nymph (N1).

The data sheet “Sex ratio of larva and alate” shows the numerical sex ratio of second-instar larva (L2), third instar [sum of first-instar nymph (N1) and first-instar worker (W1)], N1, and alate in field colonies. 

The data sheet “Alate sex ratio and body weight” shows the fresh body weight (measured to the nearest 0.1 mg) of each sex of 10 alates (indiv1–indiv10) among colonies with different alate sex ratios. The mean body weight of each sex of alates and body weight ratio (male/female) are also shown.
DOI: 10.17632/n3gwzcs8h4
title: Summary of shotgun sequencing data processing results

description: Summary of processing results of bacterial macrogenomic DNA sequencing data from 39 raw milk samples from China. One parallel sequencing was performed for each raw milk sample.
DOI: 10.17632/smswdj7fnp
title: Sinigaglia et. al CELL-REPORTS-D-24-00796 Microbiome dataset

description: Microbiome sequences and analysis
DOI: 10.17632/t6pjsyhwbc
title: Forced Online: An Exploratory Study of Language Teacher Identities During The COVID-19 Pandemic from a Complex Dynamic Systems Theory Perspective

description: This data contains transcriptions from recorded online discussions using Tencent Meeting app. The data was used for analysis and interpretation. The transcriptions also contain notes taken by the researcher.
DOI: 10.17632/tpxr8hbmy8
title: Preliminary Study on the Division of Lunar Terranes-Implications for Crustal Formation and Evolution

description: This data consists of 2 sections:  (i) Vector data of the global lunar graben which determined based on the 100 m/pixel WAC global mosaic of LRO (ii) Global lunar Mg# which was derived from MgO and FeO abundances with a resolution of 5°/pixel derived from Lunar Prospector gamma spectrum data.
DOI: 10.17632/ymc9xm8w7s
title: Dynamic Interfacial Properties and Foamability of DoTAB/SiO2 Mixtures

description: The interaction between nanoparticles and cationic surfactants is an exciting and emerging field in interfacial science. This area of research holds significant promise, linking fundamental principles to practical applications in a variety of industries, including chemical processes, biomedical applications and the petroleum industry. This study explores the interaction between dodecyltrimethylammonium bromide (DoTAB) and silica (SiO2) nanoparticles, investigating their influence on dynamic interfacial properties and foam characteristics. Through equilibrium and dynamic surface tension measurements, along with examining the dilational visco-elasticity behavior, this research reveals the complex surface behavior of DoTAB/SiO2 mixtures compared to individual surfactant solutions. The foamability and stability experiments indicate that the addition of SiO2 significantly improves the foam stability. Notably, stable foams are achieved at low SiO2 concentrations, suggesting a cost-effective approach to enhancing the foam stability. This study identifies the optimal stability conditions for 12 mM DoTAB solutions, emphasizing the crucial role of the critical aggregation concentration region. These findings offer valuable insights for designing surfactant-nanoparticle formulations to enhance foam performance in various industrial applications.
DOI: 10.17632/322k7676gn
title: data_set_queries_interoperability

description: Data from scopus for interoperability concepts
DOI: 10.17632/3fcbh58jz4
title: Strengthening connectivity between premotor and motor cortex increases inter-areal communication in the human brain

description: The ventral premotor cortex (PMv) is an important component of cortico-cortical pathways mediating prefrontal control over primary motor cortex (M1) function. Paired associative stimulation (ccPAS) is known to change PMv influence over M1 in humans, which manifests differently depending on the behavioural context. Here we show that these changes in influence are functionally linked to PMv-M1 phase synchrony changes induced by repeated paired stimulation of the two areas. PMv-to-M1 ccPAS leads to increased phase synchrony in alpha and beta bands while reversed order M1-to-PMv ccPAS leads to decreased theta phase synchrony. These changes are visible at rest but they are predictive of changes in oscillatory power in the same frequencies during movement execution and inhibition, respectively. The results unveil a link between the physiology of the motor network and the resonant frequencies mediating its interactions, and provide a putative mechanism underpinning the relationship between synaptic efficacy and brain oscillations.
DOI: 10.17632/3sk3sv8t96
title: Hydrochemical parameters of the Ob River and its tributaries

description: Major and trace elements in Ob, Andreva and Rybnaya River, including colloidal forms
DOI: 10.17632/4pkwbb9pn2
title: Fllodplain Properties

description: Kansas City metro area's floodplain properties
DOI: 10.17632/5z68zdgzk5
title: Do Errors on Classic Decision Biases Happen Fast or Slow? Numeracy and Decision Time Predict Probability Matching, Sample Size Neglect, and Ratio Bias - JNC Submission

description: Do Errors on Classic Decision Biases Happen Fast or Slow? Numeracy and Decision Time Predict Probability Matching, Sample Size Neglect, and Ratio Bias - JNC Submission
DOI: 10.17632/bsbx7k5rjy
title: LINF_180008200

description: mitoribosomal protein mS66
Leishmania infantum (strain JPCM5)
DOI: 10.17632/c48zpkz5s2
title: Supplementary data-Work-leisure conflict and emotional labor in hospitality: A moderated-mediation model

description: Supplementary data
DOI: 10.17632/hskymk7s8f
title: LINF_160009900

description: fucose kinase | pyrophosphorylase Leishmania infantum (strain JPCM5)
DOI: 10.17632/n3v66nn7nc
title: LDHU3_15.1350

description: eL6 | Ribosomal protein L6e; Leishmania donovani (HU3 strain)
DOI: 10.17632/n9c6vvx8n7
title: En torno a los niveles de competencia literaria

description: Este cuestionario pretende ahondar en los procesos de recepción que intervienen en el antes, el durante y el después de la lectura de forma que se evidencie el reconocimiento de los guiños intertextuales entre esta obra y otros pinochos del imaginario lector de los participantes (N=61) de manera que pueda establecerse una aproximación a los niveles de competencia liteararia del alumnado encuestado.
DOI: 10.17632/pnrv4hdcg7
title: DLRegion_master

description: The “DLRegion_master" zip file has one folder “DLRegion”.
The “DLRegion” folder contains three folders, “MNIST”, “CIFAR-10” and "SVHN", which are the code for the method (DLRegion) under the corresponding dataset. These include the model under test, the original seed images, and the seed images selected by the seed selection strategy.
The "data" folder under the "MNIST" folder holds the model under test and the upper and lower bounds of the model's output values on each neuron; the "seeds_50" folder holds 50 images that were correctly classified by the model; the "choose_seeds_20_xxx” folder holds the original seed images selected from the “seeds_50” folder for the fuzzy test after the corresponding seed selection strategy.
The "data" folder under the "CIFAR-10" folder holds the model under test and the upper and lower bounds of the model's output values on each neuron; the "seeds_50" folder holds 50 images that were correctly classified by the model; the "choose_seeds_20_xxx” folder holds the original seed images selected from the “seeds_50” folder for the fuzzy test after the corresponding seed selection strategy.
The “data” folder under the “SVHN” folder holds the VGG-16 model data, the training and testing data of the model.
DOI: 10.17632/r88gb67bbw
title: LDHU3_11.0620

description: mRNA cap guanine-N7 methyltransferase; Leishmania donovani (HU3 strain)
DOI: 10.17632/tvj5s8w2gw
title: quadraticspacing_code

description: This set of files has been used to produce the figures found in the article “Quadratic spacing of the effective gradient area for spatially encoded diffusion NMR”, by Rituraj Mishra and Jean-Nicolas Dumez.
https://doi.org/10.1016/j.jmr.2021.107114
DOI: 10.17632/25fgc269rm
title: Photocatalytic activity and mechanism of cerium dioxide with different  morphologies for tetracycline degradation

description: data of Photocatalytic activity and mechanism of cerium dioxide with different  morphologies for tetracycline degradation
DOI: 10.17632/35fnj99r3f
title: Survey on student perceptions towards use of free software for image-based mixing time analysis in biotechnology

description: Survey collected data on student perceptions towards use of free software for image-based mixing time analysis in biotechnology.
DOI: 10.17632/3rdxrp9wj2
title: RNA modification-related genes illuminate prognostic signature and mechanism in esophageal squamous cell carcinoma. Hui Han.

description: Original western blotting images produced in the study entitled "RNA modification-related genes illuminate prognostic signature and mechanism in esophageal squamous cell carcinoma"
DOI: 10.17632/4bn74p98sc
title: Data results of glyphosate

description: These figures are results of search treatment mouse with glyphosate. The present study aimed at assessing the induction of mutagenic changes and oxidative stress in different tissues of animals exposed to glyphosate and Trop®. Male Swiss mice were submitted to gavage treatment with glyphosate and Trop® at the concentrations of 50 and 200 mg/kg for 5 days. After the treatments the animals were euthanized and their bone marrow, liver, lung, and kidney were collected. The bone marrow was used for micronucleus. The liver, lung and kidney were submitted to biochemical analyzes of thiobarbituric acid reactive substances (TBARS), catalase enzyme, total antioxidant, in addition to evaluating the expression of Bax, Bcl2 and p53 proteins, as well as the expression of p53 gene transcription. The animals were weighed before and after the treatments. The results showed a significant weight reduction in the animals treated for 5 days. The occurrence of micronuclei was significant in the bone marrow. A significant increase in lipid peroxidation, besides changes in both, the catalase enzyme and total antioxidant levels were seen in all tissues. There was a decrease in p53 gene and Bax protein expression, and an increase of the Bcl2 protein expression. These results might suggest that the exposure to glyphosate and the consumption of antioxidant defenses can cause oxidative stress. In addition, changes in cellular biomarkers regarding glyphosate and Trop® were similar.
DOI: 10.17632/78ytf9yvft
title: Anonymous Student Academic Records in Some Subjects for the 2nd Semester of the Academic Year 2017/2018

description: Anonymous Student Academic Records for the 2nd Semester of the Academic Year 2017/2018: 
The dataset encompasses critical attributes concerning academic and demographic information. Key attributes in the dataset include: ID, Section, Gender, Age, Electricity score, Score in Mathematics Analysis, Score in Algebra, Score in the French Language
DOI: 10.17632/94rwc3p7bw
title: LDHU3_12.0960

description: Cytochrome oxidase subunit IV | COXIV; Leishmania donovani (HU3 strain)
DOI: 10.17632/b52kxjhn8s
title: Trem2/Syk/PI3K axis contributes to the host protection against Toxoplasma gondii-induced adverse pregnancy outcomes via modulating decidual macrophages

description: Decidual macrophages residing at the maternal-fetal interface have been recognized as pivotal factors for maintaining normal pregnancy; however, they are also key target cells of Toxoplasma gondii (T. gondii) in the pathology of T. gondii-induced adverse pregnancy. Trem2, as a functional receptor on macrophage surface, recognizes and binds various kinds of pathogens. The role and underlying mechanism of Trem2 in T. gondii infection remain elusive. In the present study, we found that T. gondii infection downregulated Trem2 expression and that Trem2-/- mice exhibited more severe adverse pregnancy outcomes than wildtype mice. We also demonstrated that T. gondii infection resulted in increased decidual macrophages, which were significantly reduced in the Trem2-/- pregnant mouse model as compared to wildtype control animals. We further described the inhibited proliferation, migration, and invasion functions of trophoblast cell by T. gondii antigens through macrophages as an "intermediate bridge", while this inhibition can be rescued by Trem2 agonist HSP60. Concurrently, Trem2 deficiency in bone marrow-derived macrophages (BMDMs) heightened the inhibitory effect of TgAg on the migration and invasion of trophoblast cells, accompanied by higher pro-inflammatory factors (IL-1β, IL-6 and TNF-α) but a lower chemokine (CXCL1) in T. gondii antigens-treated BMDMs. Furthermore, compelling evidence from animal models and in vitro cell experiments suggests that T. gondii inhibits the Trem2-Syk-PI3K signaling pathway, leading to impaired function of decidual macrophages. Therefore, our findings highlight Trem2 signaling as an essential pathway by which decidual macrophages respond to T. gondii infection, suggesting Trem2 as a crucial sensor of decidual macrophages and potential therapeutic target in the pathology of T. gondii-induced adverse pregnancy.
DOI: 10.17632/cb5kbygjnh
title: LINF_310040900

description: histone H4
Leishmania infantum (strain JPCM5)
DOI: 10.17632/ck6fx574rj
title: Replication kit for "Demand-and-Supply Imbalance Risk and Long-Term Swap Spreads" by Samuel G. Hanson, Aytek Malkhozov, and Gyuri Venter

description: This .zip file contains the replication kit for "Demand-and-Supply Imbalance Risk and Long-Term Swap Spreads" by Samuel G. Hanson, Aytek Malkhozov, and Gyuri Venter.
DOI: 10.17632/j5nnz236dr
title: LDHU3_06.0880

description: AT-hook protein | YEATS family
Leishmania donovani (HU3 strain)
DOI: 10.17632/jhb3v3gzkz
title: Spatialized PM2.5 during Covid-19 Pandemic in Brazil’s most populous Southern City: Implications for Post-Pandemic Era

description: This unique dataset refers to the monitoring carried out during the years 2020 and 2021 in the areas used for the research published under the same title. It presents raw meteorological data, data obtained by LCS PurpleAir equipment from nine monitoring points in the cities of Curitiba and Araucária, and data related to the COVID-19 pandemic and public transportation usage in the same locations and periods. The content of the data can be found in the README_Column_description.txt file. Further information regarding data collection, comprehension, and key findings can be found in the associated publication.
DOI: 10.17632/skzjpsvjct
title: Norkhafizah Yussuf

description: The dataset shows that school climate componens which are namely rule clarity, school connectedness, reporting and seeking help had significan influence on student`s life satisfaction at school. The data collected using stratified sampling from 14 schools in Hilir Perak, Malaysia and contained 361 samples analyzed by SEM Amos. The data can be used to know which dimensions of school climate contribute the most to student`s life satisfaction in school. By knowing the strong and weak dimensions that contribute to student`s life satisfaction, researchers can compare with the other studies and use as a guidance
DOI: 10.17632/t55tp4y9jj
title: Dataset of "Understanding the Contagiousness of Covid-19 Strains: A Geometric Approach"

description: Representative snapshots selected from the dominant clusters of the Molecular Dynamics (MD) simulations trajectories of ACE2, antibodies m396 and CR3022, Spike RBD, SARS-CoV-2 main protease, and human hemoglobin (PDB entries 2DD8, 6VW1, 6W41, 2AJF, 6LU7, 6W63, 6Y2E, and 1NQP) as input for the subsequent geometrical analysis. 
MD simulations were performed with the AMBER16 software after a structure preparation step performed in the Molecular Operating Environment (MOE) software. Each structure was solvated in a cubic box with a 12 Å side length, using a three-point (TIP3P) water model using the AmberTools 16 leap program. To adjust the salt concentration to the physiological value of 0.15 M and neutralize the system, Na+ and Cl− ions were incorporated. The minimization of the complexes was carried out in two steps using the steepest descent (5000 steps) and conjugate gradient (5000 steps) methods consecutively. During the first step, the structure was restrained, and only solvent atoms were minimized. Next, the minimization was performed without restraints, utilizing the same parameters. Following the minimization step, the MD simulations were carried out in three stages: heating, density equilibration, and production. Each solvated system was heated to 298 K for 500 ps in the heating stage, with weak restraints applied to all backbone atoms. Next, using weak restraints, density equilibration was performed for 1 ns at 298 K under constant pressure. The last stage of the MD simulations involved carrying out MD production for a duration of 100 ns without any restraints. The protein trajectory was visually inspected using the VMD package. Clustering analysis was performed on the protein trajectory using Amber's CPPTRAJ program.
DOI: 10.17632/tp7mhmtyxy
title: Data Arnqvist et al. 2021

description: Data for "Direct and indirect effects of male genital elaboration in female seed beetles" by Göran Arnqvist, Karl Grieshop, Cosima Hotzy, Johanna Rönn, Michal Polak and Locke Rowe. Proceedings of the Royal Society of London (B) (2021).
DOI: 10.17632/zwccwsynk8
title: 5-Ethynyl Uridine nascent RNA labelling in HCT116 cells (ARMC5 knockdown)

description: siRNA transfections. In 96-well plates, 25 µL of siRNA at 30 nM in Opti-MEM (Thermo Fisher 31985-062) was added per well, followed by 25 µL of transfection reagent (Thermo Fisher Lipofectamine RNAiMAX 13778100) diluted 1/125 in OptiMEM. In 384-well plates, 10 µL of siRNA at 30 nM in Opti-MEM was added per well, followed by 10 µL of diluted transfection reagent. After 20-30 minutes of room temperature incubation, HCT116 cells were added onto the transfection reaction and allowed to settle. Experiments were conducted three days after siRNA transfection.

Assays were performed as previously described (https://doi.org/10.1016/j.cels.2022.04.005). All steps were followed by three PBS washes. Cells were fixed in 4% paraformaldehyde (EMS Emgrid 15710) for 15 minutes, then permeabilised in 0.25% Triton X100 (Sigma Aldrich 93443) for 10 minutes. Cells were changed into Tris-buffered saline (125 mM sodium chloride, 50 mM Tris pH 8 Thermo Fisher Invitrogen AM9856) via 3x wash. A 1.5x click reaction mixture was made in TBS containing 150 mM sodium ascorbate (Sigma Aldrich A7631), 3 mM copper sulphate (Chem-Supply Australia CA068) and 7.5 µM Alexa647 azide (Thermo Fisher Invitrogen A10277). 30 µL of 1.5x click reaction was added onto 15 µL residual TBS and incubated for 30 minutes at room temperature. Total protein was stained with 1 µM Alexa488-NHS in 50 mM carbonate buffer at a pH of 9.2 for 15 minutes, with DAPI added for 5 minutes at 200 ng/mL in PBS.

Imaging was performed on a Nikon Ti2 microscope equipped with a Yokogawa CSU-W1 spinning disk, with 40x/NA0.95 Plan Apo λ air objective, and dual Hamamatsu ORCA-Fusion C14440-20UP cameras. 20 z-planes at 1 µm intervals were acquired. DAPI DNA stain was acquired with a 405 nm laser and 450/82 nm filter. Alexa488+ conjugated secondary antibodies were acquired with a 488 nm laser and 525/50 nm filter. Alexa647 (EU) was acquired with a 647nm laser and 685/40 nm filter.
DOI: 10.17632/6fg25sm5g8
title: Multifocal, multiphenotypic tumours arising from an MTOR mutation acquired in early embryogenesis - scRNA-seq dataset

description: This R dataset contains the Seurat object containing scRNA-seq counts and metadata from a patient with multifocal renal tumors. It is associated with the paper "Multifocal, multiphenotypic tumours arising from an MTOR mutation acquired in early embryogenesis"
DOI: 10.17632/8vmd46bt2s
title: Results for Lab Exercise with Canine Agility Data

description: Data to accompany the paper "Decision Milestones in a Canine Lab Exercise: How Critical Thinking Goes Astray" in the Journal of Statistics and Data Science Education.
DOI: 10.17632/d4mpp3r8x3
title: Orofacial cleft characterization CHOP vs SFG

description: Surgical information and LAHSHAL cleft severity scores gathered retrospectively from 514 patients with isolated orofacial cleft at the Children’s Hospital of Philadelphia scheduled for surgery between 2012 to 2019, and prospectively from 115 patients with isolated orofacial cleft presenting to four one-week-long itinerant surgical missions to Guatemala City between 2017 and 2020.