cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9x3esq
title: Occurrence Download

description: A dataset containing 2195 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Iberolacerta monticola (Boulenger, 1905)"
 ]
}

 The dataset includes 2195 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019428-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13772094
title: P+H: Structures Data

description: This dataset was employed in the study of the reaction dynamics of H atoms reacting with P atoms in amorphous solid water. The protocol for the generation of the dataset is  highlighted in the publication "Reaction dynamics on amorphous solid water surfaces using interatomic machine-learned potentials"

The data is stored in python compressed array format (.npz) with the atomization energies in kcal/mol and atomic forces in kcal/mol/Ang. The data set contains five numpy arrays

import numpy as npdata = np.load('P+H_ThirdF.npz')data['R']   # Cartesian coordinates of nuclei (Ang.)data['E']   # Total energy (kcal/mol)data['F']   # Atomic forces (kcal/mol/Ang.)data['N']   # Number of atoms in each structuredata['Z']   # Nuclear charges
DOI: 10.5281/zenodo.13772095
title: P+H: Structures Data

description: This dataset was employed in the study of the reaction dynamics of H atoms reacting with P atoms in amorphous solid water. The protocol for the generation of the dataset is  highlighted in the publication "Reaction dynamics on amorphous solid water surfaces using interatomic machine-learned potentials"

The data is stored in python compressed array format (.npz) with the atomization energies in kcal/mol and atomic forces in kcal/mol/Ang. The data set contains five numpy arrays

import numpy as npdata = np.load('P+H_ThirdF.npz')data['R']   # Cartesian coordinates of nuclei (Ang.)data['E']   # Total energy (kcal/mol)data['F']   # Atomic forces (kcal/mol/Ang.)data['N']   # Number of atoms in each structuredata['Z']   # Nuclear charges
DOI: 10.15468/dl.zah54r
title: Occurrence Download

description: A dataset containing 12215 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is one of (Sphaerophorus globosus (Huds.) Vain.)",
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "Year is greater than or equal to 1901",
 "Year is less than or equal to 2019",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 12215 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019429-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8bt35s
title: Occurrence Download

description: A dataset containing 3003 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microtus cabrerae Thomas, 1906"
 ]
}

 The dataset includes 3003 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019430-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13772036
title: Relax and repeat: The role of relaxation and practice on effects of mindfulness and mind wandering on time perception.
DOI: 10.5281/zenodo.13772037
title: Relax and repeat: The role of relaxation and practice on effects of mindfulness and mind wandering on time perception.
DOI: 10.15468/dl.ra9uvh
title: Occurrence Download

description: A dataset containing 2878 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is one of (Thamnolia vermicularis (Sw.) Schaer.)",
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "Year is greater than or equal to 1901",
 "Year is less than or equal to 2019",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2878 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019431-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5255/ukda-sn-857105
title: The Effect of Gig Economy Work: Interviews with Platform Workers, 2020-2021

description: The type of 'gig work,' already familiar to many workers through popular platforms like Uber and Deliveroo, is seen as a potential model for the future of employment. The gig economy blurred the lines between employed and self-employed statuses, with gig workers classified as self-employed, thus missing out on state support available to employed individuals. The project explored how labour market conditions for gig economy workers affected their financial security. It also examined the role of social security provisions in Italy, Sweden, and the UK. The study was initially positioned within broader debates on the increasing precarity of work and the evolving role of the welfare state in European societies. The data collection of this study was conducted between October 2020 and May 2021. 101 platform workers were recruited and invited to take part in in-depth interviews, which lasted from 38 to 119 minutes. Due to Covid-19, all the interviews were conducted remotely, using instruments that maximised participants’ privacy and minimised the risks of data breaches. To guarantee high-quality comparative material, the interviews were conducted by the PI of the project in English in the UK and Sweden, and in Italian and English in Italy, depending on the preference of the participant.
DOI: 10.7910/dvn/8dw8sb
title: Interview protocol: Embracing synthetic life? How US publics make sense of the promises and threats of new synthetic cell technologies

description: Complete interview protocol
DOI: 10.25402/imt.21864315.v1
title: Comparing Bacillus Calmette-Guérin (BCG) strains in convalescent COVID-19 patients. Supplementary tables

description:   
<strong>Supplementary Table 1.</strong> COVID-19 symptom progression. P-Value is calculated using Fisher’s exact test comparing BCG-R (Russia) to BCG-B (Brazil). Placebo data is provided for comparison. Lesion type is compared between two groups using Fisher’s exact test showing a slightly higher probability of pustule formation during the first week in the BCG-Brazil group.
<br>
  
Supplementary Table 2. There are six trials comparing effect of various strains of BCG including: BCG-Japan, BCG-Russia, BCG-Russia-I (Serum Institute of India), BCG-Denmark 1331, BCG-Tice, BCG- Connaught, BCG-Tokyo-172, BCG-Denmark culture (SSI), on Heterologous Immunity, Infant Morbidity, Infant Mortality, Trained Immunity, Vaccine Reaction, and Bladder Urothelial Carcinoma.
<br>
<br>
DOI: 10.25402/imt.21952925.v1
title: Hypertransaminasemia in metastatic renal cell carcinoma patients receiving immune-based combinations: a meta-analysis. Supplementary File

description: Supplementary data
DOI: 10.25402/imt.22032587.v1
title: Immunotherapy plus stereotactic body radiation therapy or whole-brain radiation therapy in brain metastases. Supplemental tables

description: Supplementary tables.
DOI: 10.25402/imt.22099814.v1
title: Real-world maintenance therapy and survival outcomes for pembrolizumab plus pemetrexed and platinum for non-small-cell lung cancer in USA. Supplementary table

description: Supplementary table
DOI: 10.25402/imt.22494673.v1
title: Targeting PD-1/PD-L1 in biliary tract cancer: role and available data. Supplementary tables

description: Supplementary table 1 and 2
DOI: 10.25402/fmc.21443832.v1
title: Biological activity evaluation of novel monoamine oxidase inhibitory compounds targeting Parkinson disease - Supplementary Material

description:   
Spectroscopic data (1H and 13C NMR, High-Resolution Mass Spectroscopy HRMS) for compounds <strong>3a-3f </strong>and<strong> 5a-5f</strong>
DOI: 10.25402/imt.23622738.v1
title: <strong>Prolonged clinical remission of type 1 diabetes sustained by calcifediol and low-dose basal insulin: a case report. </strong>Supplementary Tables

description: Supplementary table 1 and 2
DOI: 10.25402/imt.23633967
title: Low-dose or -number of BCG in non-muscle invasive bladder cancer: updated systematic review and meta-analysis

description: Low-dose or -number of BCG in non-muscle invasive bladder cancer: updated systematic review and meta-analysis. Supplementary material
DOI: 10.25402/fmc.21922125
title: Pyrazoline scaffold: Hit identification to lead synthesis and biological evaluation as Antidiabetic agents - Supplementary Material

description:   
<strong>Table 1: </strong>Docking studies, SA, PAINS and Brenk’s analysis of designed library of compounds 
<br>
<sup>1</sup>H NMR and <sup>13</sup>C NMR spectrums
DOI: 10.25402/fmc.21922125.v1
title: Pyrazoline scaffold: Hit identification to lead synthesis and biological evaluation as Antidiabetic agents - Supplementary Material

description:   
<strong>Table 1: </strong>Docking studies, SA, PAINS and Brenk’s analysis of designed library of compounds 
<br>
<sup>1</sup>H NMR and <sup>13</sup>C NMR spectrums
DOI: 10.5281/zenodo.11204224
title: Xenium Breast Cancer Gene Count

description: Xenium Breast Cancer Gene Count (JSON format)
DOI: 10.5281/zenodo.11204225
title: Xenium Breast Cancer Gene Count

description: Xenium Breast Cancer Gene Count (JSON format)
DOI: 10.15468/p2q2j6
title: Projet du Parc éolien de l’Épinette - Données Faune Flore du projet éolien de l'Epinette

description: Données écologiques (Flore, oiseaux, chiroptères, Insectes) récoltés dans le cadre du projet éolien de l'Epinette
DOI: 10.15468/dl.ydcy7d
title: Occurrence Download

description: A dataset containing 5363 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Fauna Íctica Nativa Continental de Chile"
 ]
}

 The dataset includes 5363 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020657-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5q4c5z
title: Occurrence Download

description: A dataset containing 5363 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Fauna Íctica Nativa Continental de Chile"
 ]
}

 The dataset includes 5363 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020658-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/xt3xgv
title: Pollen and age analysis of terrestrial plant wax from ODP Hole 175-1085A
DOI: 10.17632/jrxp93nfh9.1
title: Online data of: Exploring the potential of root-associated bacteria to control an outbreak weed

description: In this study, we explored the potential of root-associated bacteria to control an outbreak weed, Jacobaea vulgaris. Twenty root-associated bacteria strains isolated from roots of J. vulgaris were used to examine bacterial effects on seed germination, root morphology and early plant growth. Moreover, we tested direct effects of the bacteria on a specialist herbivore of J. vulgaris, the leaf chewing caterpillar (Tyria jacobaeae), commonly used in biocontrol. We also tested indirect effects of bacteria, via the plant, on the performance of T. jacobaeae and the aphid species Aphis jacobaeae. Lastly, we examined the host specificity of two tested bacteria on three other forbs. Two Gammaproteobacteria, Pseudomonas brassicacearum and Serratia plymuthica, significantly reduced root growth of seedlings in-vitro, while seed germination was unaffected. However, these negative effects were observed across other forb species as well. Bacillus spp. injection led to the highest T. jacobaeae caterpillar mortality, while ingestion had no effect. Inoculation of the plants with bacteria did not affect aphid performance, but significantly affected T. jacobaeae preference. Specifically, P. syringae and one Bacillus sp. strain significantly increased T. jacobaeae preference. 
The corresponding paper has been published on Plant and soil. More details of hypotheses and data acquisition and analysis are presented in the original paper.
DOI: 10.25402/fmc.14847108
title: Supplementary material. Identification of known drugs as potential SARS-CoV-2 Mpro inhibitors using ligand and structure-based virtual screening

description: Table S1
DOI: 10.57745/hwcsjj
title: rpg_complete_2022_d52.zip

description: :unav
DOI: 10.25402/fmc.17497355.v1
title: Supplementary material. Discovery of a novel class of small-molecule antibacterial agents

description: Data for compound 4a <br>Data for compound 4b <br>Data for compound 4c <br>Data for compound 4d <br>Data for compound 4e <br>Data for compound 4f <br>Data for compound 4g
DOI: 10.57745/stf47e
title: rpg_complete_2022_d68.zip

description: :unav
DOI: 10.25402/fmc.19753507.v1
title: Synthesis and in vitro studies for structure-based design of novel chalcones as antitubercular agents targeting InhA - SUPPLEMENTARY FILES FOR TABLES.docx

description:  <strong>Table 1. Structure of the prepared chalcones</strong> 
  
<strong>Table 2. Synthesis of Chalcone Derivatives</strong>
  
<strong>Table 3. Docking Score and Interactions of Designed Chalcone Derivatives</strong>
  
<strong>Table 4. Physicochemical Properties of the designed Inhibitors</strong>
  
<strong>Table 5. Toxicity Profile of the designed Chalcone Derivatives</strong>
  
<strong>Table 6. In-silico Pharmacokinetic Profile of the designed Chalcone Derivatives</strong>
  
<strong>Table 7. Bioactivity Score and Medicinal Chemistry of the designed Chalcone Derivatives</strong>
  
<strong>Table 8. Antimycobacterial activity of Chalcone Derivatives</strong>
DOI: 10.15468/dl.a5y8dy
title: Occurrence Download

description: A dataset containing 1384958 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gallinago gallinago (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 1384958 records from 1334 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020653-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25402/fmc.19447325.v1
title: Supplementary material. Identification of SET/EED dual binders as PRC2 innovative inhibitors.

description: Figure S1. 2D
 chemical structure of the inhibitor
 (3R,4S)-1-[(2-methoxyphenyl)methyl]-N,N-dimethyl-4-(1-methylindol-3-yl)pyrrolidin-3-amine
 (LQD) co-crystallized in the embryonic ectoderm development (EED) model (PDB
 ID 5U69).
 Figure S2. 3D
 representation of pharmacophore model in the binding pocket of EED. Chemical
 features are color-coded: yellow, green and red spheres represent hydrophobic
 features (HY), H-bond donors (HBD), and H-bond acceptors (HBA), respectively.
 Figure S3. 2D
 chemical structure of the S-Adenosyl-L-Homocysteine (SAM) co-crystallized in
 the SET model (PDB ID 5HYN).
 Figure S4. 3D
 representation of pharmacophore model in the binding pocket of SET. Chemical
 features are color-coded: yellow spheres represent hydrophobic features (HY),
 green and red arrows represent H-bond donors (HBD) and H-bond acceptors
 (HBA), respectively.
 Figure S5. 2D
 representation of the underlying binding interactions of the hit compounds A)
 1, B) 2, C) 3, D) 4 and E) 5 in the embryonic ectoderm development (EED)
 pocket. The H-bonds are depicted as green and red dash arrows, depending on
 the behavior of the ligand as donor or acceptor, respectively. Conversely,
 the main hydrophobic and aromatic interactions were depicted as yellow lines
 and blue arrows, respectively.
 
 




Figure S6. 2D representation of the underlying
binding interactions of the hit compounds A) 1, B) 2, C) 3, D) 4 and E) 5 in
the SET pocket. The H-bonds are depicted as green and red dash arrows,
depending on the behavior of the 


 
 
 ligand as donor or
 acceptor, respectively. Conversely, the main hydrophobic and aromatic
 interactions were depicted as yellow lines and blue arrows, respectively.
 Table S1. Protein
 Data Bank (PDB) ID and Diffraction-component Precision Index (DPI) score for
 both targets.
 Table S2. Set of 250
 actives compounds of SET.
 Table S3. Set of 154
 actives compounds of embryonic ectoderm development (EED).
 
 




Table S4. List of the shared hits, reported
their ADME-related parameters computed inside the Multi-Target Ligand
(Mu.Ta.Lig.) Chemotheca.
DOI: 10.25402/fmc.20653089.v1
title: Literature-based drug–drug similarity for drug repurposing: impact of Medical Subject Headings term refinement and hierarchical clustering - Supplementary Material

description: supplementary material
  
Section 1: Drug list curation procedure
  
Section 2: Reference Drug cluster preparation based on ATC drug classification
  
Section 3: Misclassification Counting
  
Section 4: Cluster-wise summary of results obtained from various K-means Clustering Experiments
  
Section 5: Cluster-wise summary of results obtained from various Hierarchical Clustering Experiments
<br>
supplementary tables 
<br>
  Supplementary Table1: Description of the Classes and Sub-classes from the MeSH hierarchy which were considered for creation of the refined MeSH terms
  
Supplementary Table 2. Description of drugs which have been previously suggested for repurposing and could also be predicted using results of various in silico experiments conducted using k-means clustering
  
Supplementary Table 3.  Description of drugs which have been previously suggested for repurposing and could also be predicted using results of various in silico experiments conducted using hierarchical clustering
 Supplementary Table 4. Repurposing suggestion details - Glyburide 
  
Supplementary Table 5.  Repurposing suggestion details - Stanozolol
  
Supplementary Table 6.  Repurposing suggestion details - Rimexolone
  
Supplementary Table 7.  Repurposing suggestion details - Carbachol
  
Supplementary Table 8.  Repurposing suggestion details - Pilocarpine
  
Supplementary Table 9.  Repurposing suggestion details - Aminophylline
  
Supplementary Table 10.  Repurposing suggestion details - Theophylline
<br>
DOI: 10.25402/fmc.19550878.v1
title: Supplementary tables. A hybrid resampling algorithms SMOTE and ENN based deep learning models for identification of Marburg virus inhibitors

description:   
<strong>Supplementary Table 1: </strong>The lead molecules of anti-MARV from ChemDiv antiviral library
<strong>Supplementary Table 2: </strong>The lead molecules of anti-MARV from ChEMBL antiviral library.
<strong>Supplementary Table 3:</strong> The lead molecules of anti-MARV from phytochemical database.
<strong>Supplementary Table 4: </strong>The lead molecules of anti-MARV from natural product NCI diversity setIV.
DOI: 10.25573/data.10042712.v5
title: Bay of Panama Water Quality Monitoring Project_Salinity and Conductivity, all stations

description: Bay of Panama water quality monitoring program. <br>Initiated July 2017<br><br>Salinity and conductivity for all stations<br><br>Depth profiles at 7 locations. Approximately 5m depth intervals<br><br>Sampling Sites<br> 1 8° 38.743'N 79° 2.887'W<br> 2 8° 42.498'N 78° 57.855'W<br> 3 8° 41.894'N 79° 9.648'W<br> 4 8° 44.138'N 79° 15.955'W<br> 5 8° 45.670'N 79° 21.906'W<br> 6 8° 47.078'N 79° 27.968'W<br> 7 8° 51.308'N 79° 28.162'W<br> <br>Weekly depth profile (approximately 5m intervals) using YSI EXO 2 sonde.<br>
DOI: 10.25402/fmc.19697734.v1
title: Supplementary Information - An emerging role of KRAS in biogenesis, cargo sorting and uptake of cancer-derived extracellular vesicles

description:   
Supplementary Information
Supplemental Table 1. Proteins with increased levels in mutant KRAS cancer-derived EVs and their oncogenic properties.
DOI: 10.17632/fyv5gddfxj.1
title: ERPSAS - Validation of the Emotional Reasoning in Public Speaking Anxiety Scale

description: Emotional reasoning (ER) is the process of forming judgments based on emotions rather than objective information. To assess ER specifically in individuals with public speaking anxiety (PSA), we developed the Emotional Reasoning in Public Speaking Anxiety Scale (ERPSAS). This scale aims to quantify the extent to which emotions influence reasoning processes in the context of PSA. In our study, we administered the ERPSAS to a sample drawn from the general population. To establish the validity of the scale, we conducted two types of analyses: convergent validity, comparing it with existing measures of ASP, and divergent validity, comparing it with measures of anxiety and depression. For convergent validity, we assessed the ERPSAS together with established measures of ASP, including the Spanish version of the Public Speaking Anxiety Scale (PSAS-S; Bartholomay & Houlihan, 2016; Dueñas et al., 2018), the validated Spanish version of the Fear of Negative Evaluation Scale (BFNE; Gallego et al., 2007; Leary, 1983), and the Positive and Negative Self-Affirmations in Public Speaking Scale (SSPS; Hofmann & DiBartolo, 2000; Rivero et al., 2010). This approach allowed us to determine the degree of alignment of the SSPSAS with other instruments designed to measure similar constructs.
In terms of divergent validity, we compared the ERPSAS with measures of anxiety and depression, namely the Patient Health Questionnaire (PHQ-9; Diez-Quevedo et al., 2001; Kroenke et al., 2001) and the short version of the State-Trait Anxiety Inventory (STAI-T; Buela-Casal & Guillén-Riquelme, 2017; Spielberger et al., 1970). By examining the relationship of the ERPSAS to these constructs, we were able to ensure that it measured PSA-specific emotional reasoning and not general emotional distress. Through our analyses, we identified an optimal cut-off point for the ERPSAS, resulting in a four-stage scale reflecting PSA severity. Notably, people with severe PSA tended to rate scenarios with negative emotional valence as more threatening, even when presented with safe factual information (p&lt;0.001).
DOI: 10.15468/dl.xp8fqj
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eremanthus cinctus Baker"
 ]
}

 The dataset includes 74 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020661-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25573/data.10042382.v6
title: Bay of Panama Water Quality Monitoring Project_Temperature, all stations

description: Bay of Panama water quality monitoring program. <br>Initiated July 2017<br><br>Temperature data for all stations<br><br>Depth profiles at 7 locations. Approximately 5m depth intervals<br><br>Sampling Sites<br> 1 8° 38.743'N 79° 2.887'W<br> 2 8° 42.498'N 78° 57.855'W<br> 3 8° 41.894'N 79° 9.648'W<br> 4 8° 44.138'N 79° 15.955'W<br> 5 8° 45.670'N 79° 21.906'W<br> 6 8° 47.078'N 79° 27.968'W<br> 7 8° 51.308'N 79° 28.162'W<br> <br>Weekly depth profile (approximately 5m intervals) using YSI EXO 2 sonde.<br>
DOI: 10.15468/dl.hpqe9g
title: Occurrence Download

description: A dataset containing 772 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eremanthus crotonoides (DC.) Sch.Bip."
 ]
}

 The dataset includes 772 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020662-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.