cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.uxwahh
title: Occurrence Download

description: A dataset containing 48657 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Squamata",
 "TaxonKey is Crocodylia",
 "TaxonKey is Testudines",
 "TaxonKey is Sphenodontia",
 "TaxonKey is Amphibia"
 ]
 },
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "and" : [
 "DecimalLongitude is greater than 52.197",
 "DecimalLongitude is less than 65.15",
 "DecimalLatitude is greater than -22.686",
 "DecimalLatitude is less than -15.645",
 "Country is Réunion"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 48657 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024758-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f8e4w7
title: Occurrence Download

description: A dataset containing 9810 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-12.98391 29.58236,-16.78191 36.11908,-23.73628 40.37755,-30.94099 40.67243,-32.76988 35.80024,-19.32123 32.57344,-19.60166 27.23381,-15.89125 26.59753,-13.11101 28.17737,-12.98391 29.58236))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pieridae",
 "Year 2000-2024"
 ]
}

 The dataset includes 9810 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024759-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e789py
title: Occurrence Download

description: A dataset containing 1464 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Epipactis palustris (L.) Crantz"
 ]
}

 The dataset includes 1464 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024760-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7pad48
title: Occurrence Download

description: A dataset containing 1750 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Squamata",
 "TaxonKey is Crocodylia",
 "TaxonKey is Testudines",
 "TaxonKey is Sphenodontia",
 "TaxonKey is Amphibia"
 ]
 },
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "and" : [
 "DecimalLongitude is greater than 52.197",
 "DecimalLongitude is less than 65.15",
 "DecimalLatitude is greater than -22.686",
 "DecimalLatitude is less than -15.645",
 "Country is Mauritius"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 1750 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024761-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nut3em
title: Occurrence Download

description: A dataset containing 107792 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Ichthyology Collection - Royal Ontario Museum"
 ]
}

 The dataset includes 107792 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024754-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s4yppw
title: Occurrence Download

description: A dataset containing 18923 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-12.98391 29.58236,-16.78191 36.11908,-23.73628 40.37755,-30.94099 40.67243,-32.76988 35.80024,-19.32123 32.57344,-19.60166 27.23381,-15.89125 26.59753,-13.11101 28.17737,-12.98391 29.58236))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Nymphalidae",
 "Year 2000-2024"
 ]
}

 The dataset includes 18923 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024762-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dnqzt5
title: Occurrence Download

description: A dataset containing 127 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dolomedes mizhoanus Kishida, 1936"
 ]
}

 The dataset includes 127 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024763-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e5ezs7
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Cyperus imbricatus Retz."
 ]
}

 The dataset includes 36 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024764-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.29htw3
title: Occurrence Download

description: A dataset containing 1613598 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is one of (Belgium, Norway, Switzerland)",
 "TaxonKey is Cyperaceae"
 ]
}

 The dataset includes 1613598 records from 332 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024735-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-235470
title: 17th Annual Leadership Conference, COGIC, Women's International Convention, General Session, minutes, 2005

description: [description english/roman)] Minutes of the General Session, Women's International Convention, COGIC (Church of God in Christ), 17th Annual Leadership Conference, Atlanta, Georgia, 2005 May 30.
DOI: 10.15468/dl.9neac7
title: Occurrence Download

description: A dataset containing 19631 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bucephala islandica (J.F.Gmelin, 1789)",
 "HasCoordinate is True",
 "Country is United States of America",
 "Year is greater than or equal to 1989",
 "Year is less than or equal to 2009",
 "Month is greater than or equal to January",
 "Month is less than or equal to December",
 "HasGeospatialIssue is False",
 "DecimalLatitude is greater than or equal to 24.5",
 "DecimalLatitude is less than or equal to 49.5",
 "DecimalLongitude is greater than or equal to -125.0",
 "DecimalLongitude is less than or equal to -66.5"
 ]
}

 The dataset includes 19631 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0246459-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bnsqyr
title: Occurrence Download

description: A dataset containing 1219582 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Ecuador"
 ]
}

 The dataset includes 1219582 records from 384 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0190985-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-29093
title: Correspondence book No. 3 of Pentecostal Missionary Union [PMU], 1921

description: [description english/roman)] Pentecostal Missionary Union [PMU] Correspondence book No. 3 including 31 pages of subject index; 1006 pages of PMU outgoing correspondence.
DOI: 10.15468/dl.qnfwtp
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sanchezia sprucei Lindau"
 ]
}

 The dataset includes 41 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0112980-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xvx3yp
title: Occurrence Download

description: A dataset containing 67261 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Andromeda polifolia L.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "Year is greater than or equal to 1990",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 67261 records from 289 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0162929-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-29074
title: Correspondence book No. 3 of Pentecostal Missionary Union [PMU], 1921

description: [description english/roman)] Pentecostal Missionary Union [PMU] Correspondence book No. 3 including 31 pages of subject index; 1006 pages of PMU outgoing correspondence.
DOI: 10.15468/dl.9r66er
title: Occurrence Download

description: A dataset containing 261389 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pistacia L."
 ]
}

 The dataset includes 261389 records from 524 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064194-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bzapc8
title: Occurrence Download

description: A dataset containing 354 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parapercis multifasciata Döderlein, 1884"
 ]
}

 The dataset includes 354 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0112981-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-29166
title: Correspondence book No. 3 of Pentecostal Missionary Union [PMU], 1921

description: [description english/roman)] Pentecostal Missionary Union [PMU] Correspondence book No. 3 including 31 pages of subject index; 1006 pages of PMU outgoing correspondence.
DOI: 10.15468/dl.z84b4t
title: Occurrence Download

description: A dataset containing 121 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ditrema viride Oshima, 1940"
 ]
}

 The dataset includes 121 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064221-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pz92tw
title: Occurrence Download

description: A dataset containing 2118 species occurrences available in GBIF matching the query:
{
 "GadmGid" : [
 "is IND.3.5_1"
 ]
}

 The dataset includes 2118 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0112998-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-29076
title: Correspondence book No. 3 of Pentecostal Missionary Union [PMU], 1921

description: [description english/roman)] Pentecostal Missionary Union [PMU] Correspondence book No. 3 including 31 pages of subject index; 1006 pages of PMU outgoing correspondence.
DOI: 10.15468/dl.xu4945
title: Occurrence Download

description: A dataset containing 3639 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Eleocharis bonariensis Nees, Disphyma crassifolium (L.) L.Bolus, Echium pininana Webb & Berthel., Gypsophila tubulosa (Jaub. & Spach) Boiss.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3639 records from 146 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0194837-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rugwu6
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sclerotinia sulcata (Roberge ex Desm.) Whetzel)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 33 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0246423-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-28795
title: Correspondence book No. 2 of Pentecostal Missionary Union [PMU], 1920-1921

description: [description english/roman)] Pentecostal Missionary Union [PMU] Correspondence book No. 2 including 31 pages of subject index; 1007 pages of PMU outgoing correspondence.
DOI: 10.15468/dl.db7adc
title: Occurrence Download

description: A dataset containing 391 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-90.0842760000000027 29.9818280000000001, -90.0842760000000027 29.9829337500000008, -90.0842760000000027 29.9844948000000002, -90.0842760000000027 29.9854054199999993, -90.0842760000000027 29.9867713400000007, -90.0842760000000027 29.9883324000000009, -90.0834316100000052 29.9883324000000009, -90.0822625899999991 29.9883324000000009, -90.0813533500000005 29.9883324000000009, -90.0799894900000027 29.9883324000000009, -90.0785606900000033 29.9883324000000009, -90.0767422100000061 29.9883324000000009, -90.0756381399999952 29.9883324000000009, -90.0747288999999967 29.9883324000000009, -90.0733000000000033 29.9883324000000009, -90.0733000000000033 29.9868363900000006, -90.0733000000000033 29.9856005500000009, -90.0733000000000033 29.9844948000000002, -90.0733000000000033 29.9837142800000009, -90.0733000000000033 29.9818280000000001, -90.0753134100000068 29.9818280000000001, -90.0766772700000047 29.9818280000000001, -90.0783009099999958 29.9818280000000001, -90.0794049800000067 29.9818280000000001, -90.0808987300000013 29.9818280000000001, -90.0819378599999965 29.9818280000000001, -90.0835615000000018 29.9818280000000001, -90.0842760000000027 29.9818280000000001))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 391 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0099984-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tqcnww
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sanchezia rubriflora Leonard"
 ]
}

 The dataset includes 19 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0112976-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-29027
title: Correspondence book No. 2 of Pentecostal Missionary Union [PMU], 1920-1921

description: [description english/roman)] Pentecostal Missionary Union [PMU] Correspondence book No. 2 including 31 pages of subject index; 1007 pages of PMU outgoing correspondence.
DOI: 10.15468/dl.83j9st
title: Occurrence Download

description: A dataset containing 55985 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Myrmeleotettix maculatus (Thunberg, 1815), Myrrhis odorata (L.) Scop.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 55985 records from 393 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0246427-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11225563
title: Data supporting "Transformer Model Generated Bacteriophage Genomes are Compositionally Distinct from Natural Sequences"

description: Sequence and composition data supporting doi: 10.1101/2024.03.19.585716. Uncompressed file size is ~5.8GB.

Data in zip files is organized by sequence provenance (generRNA, natural, or transformer (megaDNA)). Common file types between folders include:



Multi-record fasta file: Sequence data for all sequences of a given provenance. For generRNA sequences, these are found within the `seq` column of file "MFE_distribution_Fig4a.csv"

Composition files: Individual sequence level compositional metrics for sliding 120 bp windows. Only structural metrics were used in this study.

Genomad: Results from the genomad pipeline (https://portal.nersc.gov/genomad/)

Stats: Aggregate statistics for all sequences of a given provenance.


The natural folder also has a metadata file detailing the taxonomy for all natural sequences.Figure datasets are the cleaned (sometimes aggregated) datasets that underly specific figures in the manuscript. The figure designations are based on the order in: https://www.biorxiv.org/content/10.1101/2024.03.19.585716v1.
DOI: 10.5281/zenodo.11225564
title: Data supporting "Transformer Model Generated Bacteriophage Genomes are Compositionally Distinct from Natural Sequences"

description: Sequence and composition data supporting doi: 10.1101/2024.03.19.585716. Uncompressed file size is ~5.8GB.

Data in zip files is organized by sequence provenance (generRNA, natural, or transformer (megaDNA)). Common file types between folders include:



Multi-record fasta file: Sequence data for all sequences of a given provenance. For generRNA sequences, these are found within the `seq` column of file "MFE_distribution_Fig4a.csv"

Composition files: Individual sequence level compositional metrics for sliding 120 bp windows. Only structural metrics were used in this study.

Genomad: Results from the genomad pipeline (https://portal.nersc.gov/genomad/)

Stats: Aggregate statistics for all sequences of a given provenance.


The natural folder also has a metadata file detailing the taxonomy for all natural sequences.Figure datasets are the cleaned (sometimes aggregated) datasets that underly specific figures in the manuscript. The figure designations are based on the order in: https://www.biorxiv.org/content/10.1101/2024.03.19.585716v1.
DOI: 10.15468/dl.h4mjpa
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Xylopsocus capucinus (Fabricius, 1781))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 23 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026810-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/6m82rtk89v.1
title: Causal Factors Coded from eMARS Dataset

description: This dataset was originally gathered from the eMARS dataset. The eMARS database is a lesson-learned database in accordance with the purpose stated in the Seveso Directive (2012/18/EU). To preserve its nature as an objective source of lessons learned information and maintain the willingness of authorities and operators to provide an honest and detailed account of what really happened, to prevent future similar incidents, the identifying information of the name of the sites and the location of the incidents in the database is not publicly disclosed.
DOI: 10.17632/6m82rtk89v.2
title: Causal Factors Coded from eMARS Dataset

description: This dataset was originally gathered from the eMARS dataset. The eMARS database is a lesson-learned database in accordance with the purpose stated in the Seveso Directive (2012/18/EU). To preserve its nature as an objective source of lessons learned information and maintain the willingness of authorities and operators to provide an honest and detailed account of what really happened, to prevent future similar incidents, the identifying information of the name of the sites and the location of the incidents in the database is not publicly disclosed.