cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5933137.v1
title: Dataset for: Structural and genetic analysis of START superfamily protein MSMEG_0129 from <i>Mycobacterium smegmatis</i>

description: <i>Mycobacterium tuberculosis</i>, a notorious pathogen, still threatens human health. Rv0164, an antigen of both T- and B-cells conserved across the mycobacteria, and MSMEG_0129, its close homolog in <i>Mycobacterium smegmatis</i>, are predicted members of the START domain superfamily, but their molecular function is unknown. Here, gene knockout studies demonstrated MSMEG_0129 is essential for bacterial growth, suggesting Rv0164 may be a potential drug target. The MSMEG_0129 crystal structure determined at 1.95 Å reveals a fold similar to that in polyketide aromatase/cyclases ZhuI and TcmN from <i>Streptomyces sp.</i>. Structural comparisons and docking simulations, however, infer that MSMEG_0129 and Rv0164 are unlikely to catalyze polyketide aromatization/cyclization, but probably play an irreplaceable role, for example in lipid transfer, in cell envelope synthesis during mycobacterial growth.
DOI: 10.6084/m9.figshare.5933068
title: FlowUS: A comprehensive dataset of United States streamflow time series data

description: A comprehensive fileset of daily streamflow time series data from 28,164 United States Geological Survey streamgages across the United States and Puerto Rico is provided. This dataset synthesizes publicly available streamflow records in a way that enhances their distribution and utility. First, these data are formatted in a manner that is consistent with other opensource freshwater datasets and ready for use in any programming language or software package. Additionally, this fileset contains a database of streamgage summary statistics from which users can simultaneously filter sites by multiple criteria and identify streamgages that meet the requirements of their analysis.
DOI: 10.6084/m9.figshare.5933068.v1
title: FlowUS: A comprehensive dataset of United States streamflow time series data

description: A comprehensive fileset of daily streamflow time series data from 28,164 United States Geological Survey streamgages across the United States and Puerto Rico is provided. This dataset synthesizes publicly available streamflow records in a way that enhances their distribution and utility. First, these data are formatted in a manner that is consistent with other opensource freshwater datasets and ready for use in any programming language or software package. Additionally, this fileset contains a database of streamgage summary statistics from which users can simultaneously filter sites by multiple criteria and identify streamgages that meet the requirements of their analysis.
DOI: 10.6084/m9.figshare.5933050
title: Early insights into the characteristics and evolution of clinical parameters in a cohort of patients prescribed sacubitril/valsartan in Germany

description: <b>Objectives</b>: This study aimed to provide early insights into sacubitril/valsartan (sac/val) prescription patterns and the demographic and clinical characteristics of patients prescribed sac/val in primary care and cardiology settings in Germany. <b>Methods</b>: The study used electronic medical records from the German IMS® Disease Analyzer database. Patients with ≥1 prescription for sac/val during 1 January–31 December 2016 (<i>n</i> = 1643) were identified and followed up for ≤12 months from first prescription. Patients with ≥1 heart failure (HF) diagnosis during the study period, ≥1 additional HF diagnosis in the full history of the database, and ≥1 prescription for an angiotensin-converting enzyme inhibitor or angiotensin receptor blocker and a β-blocker during the study period, without a prescription for sac/val (<i>n</i> = 25,264), were included as a reference cohort. Changes in clinical parameters in the 12 months before and after sac/val initiation were investigated and compared with those from the PARADIGM-HF study. <b>Results</b>: The characteristics of patients prescribed sac/val more closely resembled those of patients enrolled in PARADIGM-HF (e.g. younger age, higher proportion of men than women, lower systolic blood pressure) than patients in the reference cohort. Most patients were initiated on the lowest dose of sac/val irrespective of clinical setting. Significant decreases (<i>p</i> <b>Conclusions:</b> Patients prescribed sac/val had similar baseline demographics and clinical characteristics to those from PARADIGM-HF, and most patients were initiated on the lowest dose. Changes in clinical parameters before and after initiation mirrored findings from the PARADIGM-HF study.
DOI: 10.6084/m9.figshare.5933050.v1
title: Early insights into the characteristics and evolution of clinical parameters in a cohort of patients prescribed sacubitril/valsartan in Germany

description: <b>Objectives</b>: This study aimed to provide early insights into sacubitril/valsartan (sac/val) prescription patterns and the demographic and clinical characteristics of patients prescribed sac/val in primary care and cardiology settings in Germany. <b>Methods</b>: The study used electronic medical records from the German IMS® Disease Analyzer database. Patients with ≥1 prescription for sac/val during 1 January–31 December 2016 (<i>n</i> = 1643) were identified and followed up for ≤12 months from first prescription. Patients with ≥1 heart failure (HF) diagnosis during the study period, ≥1 additional HF diagnosis in the full history of the database, and ≥1 prescription for an angiotensin-converting enzyme inhibitor or angiotensin receptor blocker and a β-blocker during the study period, without a prescription for sac/val (<i>n</i> = 25,264), were included as a reference cohort. Changes in clinical parameters in the 12 months before and after sac/val initiation were investigated and compared with those from the PARADIGM-HF study. <b>Results</b>: The characteristics of patients prescribed sac/val more closely resembled those of patients enrolled in PARADIGM-HF (e.g. younger age, higher proportion of men than women, lower systolic blood pressure) than patients in the reference cohort. Most patients were initiated on the lowest dose of sac/val irrespective of clinical setting. Significant decreases (<i>p</i> <b>Conclusions:</b> Patients prescribed sac/val had similar baseline demographics and clinical characteristics to those from PARADIGM-HF, and most patients were initiated on the lowest dose. Changes in clinical parameters before and after initiation mirrored findings from the PARADIGM-HF study.
DOI: 10.6084/m9.figshare.5932987
title: Graph of russian mathematicians and their doctoral advisors from wikidata.org in Gephi format

description: Graph, where the vertex is a mathematician, and the edge is of the type "Mathematician - doctoral advisors". <br>Graph on GEXF
DOI: 10.6084/m9.figshare.5932987.v1
title: Graph of russian mathematicians and their doctoral advisors from wikidata.org in Gephi format

description: Graph, where the vertex is a mathematician, and the edge is of the type "Mathematician - doctoral advisors". <br>Graph on GEXF
DOI: 10.6084/m9.figshare.5932861
title: Educating the labouring poor in nineteenth-century Suffolk

description: This article demonstrates the utility of a new source, prison registers, for the history of literacy and education in nineteenth-century England. It focuses on two sets of prison registers from the two county gaols in Suffolk, located at Ipswich and Bury St Edmunds, which contain personal information on 16,690 individuals over the period 1840 to 1878. First, the article examines the context in which personal information about prisoners was recorded and tests the data against benchmarks from other sources to prove its reliability. Second, the article employs two methods, statistical analysis and digital mapping, to study in depth the rich data on prisoners’ literacy and schooling. Finally, the article shows how the results of this analysis significantly revise our understanding of the prevalence of schooling among the labouring poor, the use of different types of schools, the role of the partially literate in the drive towards mass literacy, and the importance of life-long learning.
DOI: 10.6084/m9.figshare.5932861.v1
title: Educating the labouring poor in nineteenth-century Suffolk

description: This article demonstrates the utility of a new source, prison registers, for the history of literacy and education in nineteenth-century England. It focuses on two sets of prison registers from the two county gaols in Suffolk, located at Ipswich and Bury St Edmunds, which contain personal information on 16,690 individuals over the period 1840 to 1878. First, the article examines the context in which personal information about prisoners was recorded and tests the data against benchmarks from other sources to prove its reliability. Second, the article employs two methods, statistical analysis and digital mapping, to study in depth the rich data on prisoners’ literacy and schooling. Finally, the article shows how the results of this analysis significantly revise our understanding of the prevalence of schooling among the labouring poor, the use of different types of schools, the role of the partially literate in the drive towards mass literacy, and the importance of life-long learning.
DOI: 10.6084/m9.figshare.5932831
title: Intergenerational Performance Ecology: A Practice-based Approach

description: One of these videos is the performance trailer for Wild Life, and two of these videos are edited extracts from the creative process of making Wild Life. They are data in support of the article 'Intergenerational Performance Ecology: A Practice-based Approach'<br>
DOI: 10.6084/m9.figshare.5932810
title: data_forupload.csv

description: The data set contains data from a project in which 125 premenopausal women received different doses of estradiol valerate and performed an emotional memory test. Recollection and familiarity parameters were estimated using confidence ratings and remember/know responses. The dataset also includes the concentrations of estrogen, progesterone and cortisol.<br>
DOI: 10.6084/m9.figshare.5932810.v1
title: data_forupload.csv

description: The data set contains data from a project in which 125 premenopausal women received different doses of estradiol valerate and performed an emotional memory test. Recollection and familiarity parameters were estimated using confidence ratings and remember/know responses. The dataset also includes the concentrations of estrogen, progesterone and cortisol.<br>
DOI: 10.6084/m9.figshare.5932747
title: Blue tit HDL feather clipping data

description: Data on work rate, body temperature, surface temperature, body dimensions, and body mass change from breeding parents in an experiment where one group was heat-loss facilitated and one group was not. Data on nestling growth for nestlings sired by each group of parents, and subsidiary data on variation in ambient temperature at the study site.
DOI: 10.6084/m9.figshare.5932747.v1
title: Blue tit HDL feather clipping data

description: Data on work rate, body temperature, and body mass change from experiment where one group was heat-loss facilitated and one group was not. Data on nestling growth for nestlings sired by each group of parents, and subsidiary data on variation in ambient temperature at the study site.
DOI: 10.6084/m9.figshare.5932747.v3
title: Blue tit HDL feather clipping data

description: Data on work rate, body temperature, surface temperature, body dimensions, and body mass change from breeding parents in an experiment where one group was heat-loss facilitated and one group was not. Data on nestling growth for nestlings sired by each group of parents, and subsidiary data on variation in ambient temperature at the study site.
DOI: 10.6084/m9.figshare.5932747.v2
title: Blue tit HDL feather clipping data

description: Data on work rate, body temperature, surface temperature, body dimensions, and body mass change from breeding parents in an experiment where one group was heat-loss facilitated and one group was not. Data on nestling growth for nestlings sired by each group of parents, and subsidiary data on variation in ambient temperature at the study site.
DOI: 10.6084/m9.figshare.5932738
title: Astrocyte Cytokine Data.xlsx

description: Original data for the manuscript submitted by Zeinab Adel Samy, Lulwa Abdullah, Marian Turcani, James Craig and Zoran Redzic
DOI: 10.6084/m9.figshare.5932738.v1
title: Astrocyte Cytokine Data.xlsx

description: Original data for the manuscript submitted by Zeinab Adel Samy, Lulwa Abdullah, Marian Turcani, James Craig and Zoran Redzic
DOI: 10.6084/m9.figshare.5932729
title: Top 100 2013

description: This is a CSV file containing the data behind the Altmetric Top 100 for 2013.
DOI: 10.6084/m9.figshare.5932729.v3
title: Top 100 2013

description: This is a CSV file containing the data behind the Altmetric Top 100 for 2013.
DOI: 10.6084/m9.figshare.5932729.v2
title: Top 100 2013

description: This is a CSV file containing the data behind the Altmetric Top 100 for 2013.
DOI: 10.6084/m9.figshare.5932726
title: Anvi'o files MGs and MTs for Candidatus Nobermanella desum

description: Anvio v.4 files for 3 metagenomes and 2 metatranscriptomes mapped onto <i>Candidatus</i> 'Nobermanella desum' (i.e., DWH O. desum v2).<br>Metagenomes were first published at:<br>---https://www.nature.com/articles/ismej201259---<br>Credit for generating the metagenomes goes to Olivia Mason and Janet Jansson.
DOI: 10.6084/m9.figshare.5932726.v1
title: Anvi'o files MGs and MTs for Candidatus Nobermanella desum

description: Anvio v.4 files for 3 metagenomes and 2 metatranscriptomes mapped onto <i>Candidatus</i> 'Nobermanella desum' (i.e., DWH O. desum v2).<br>Metagenomes were first published at:<br>---https://www.nature.com/articles/ismej201259---<br>Credit for generating the metagenomes goes to Olivia Mason and Janet Jansson.
DOI: 10.6084/m9.figshare.5932720
title: Raw dataset.rar

description: The data is about extraction of of non-steroidal anti-inflammatory drugs (NSAIDs), namely indoprofen (INP), ketoprofen (KTP), ibuprofen (IBP) and fenoprofen (FNP), from environmental water samples by using magnetic solid phase extraction technique. The adsorbent was synthesized and characterized by using FT-IR, XRD, FESEM, EDX, VSM and BET analysis. To maximize the extraction performance of <b>MSp-TDI-calix</b> decisive MSPE affective parameters such as dosage, extraction time, sample volume, type of organic eluent, volume of organic eluent, desorption time and pH were comprehensively optimized prior to HPLC-DAD determination.<br>
DOI: 10.6084/m9.figshare.5932720.v1
title: Raw dataset.rar

description: The data is about extraction of of non-steroidal anti-inflammatory drugs (NSAIDs), namely indoprofen (INP), ketoprofen (KTP), ibuprofen (IBP) and fenoprofen (FNP), from environmental water samples by using magnetic solid phase extraction technique. The adsorbent was synthesized and characterized by using FT-IR, XRD, FESEM, EDX, VSM and BET analysis. To maximize the extraction performance of <b>MSp-TDI-calix</b> decisive MSPE affective parameters such as dosage, extraction time, sample volume, type of organic eluent, volume of organic eluent, desorption time and pH were comprehensively optimized prior to HPLC-DAD determination.<br>
DOI: 10.6084/m9.figshare.5932699
title: The association between circulating endostatin and a disturbed circadian blood pressure pattern in patients with type 2 diabetes

description: <b>Background:</b> Endostatin, cleaved from collagen XVIII in the extracellular matrix, is a promising circulating biomarker for cardiovascular damage. It possesses anti-angiogenic and anti-fibrotic functions and has even been suggested to be involved in blood pressure regulation. Less is known if endostatin levels relate to circadian blood pressure patterns. In the present paper we studied the association between circulating levels of endostatin and nocturnal dipping in blood pressure. <b>Methods:</b> We used the CARDIPP-study, a cohort of middle aged, type 2 diabetics (<i>n</i> = 593, 32% women), with data on both 24-hour and office blood pressure, serum-endostatin, cardiovascular risk factors, and incident major cardiovascular events. Nocturnal dipping was defined as a &gt;10% difference between day- and night-time blood pressures. <b>Results:</b> Two-hundred four participants (34%) were classified as non-dippers. The mean endostatin levels were significantly higher in non-dippers compared to dippers (mean ± standard deviation: 62.6 ± 1.8 µg/l vs. 58.7 ± 1.6 µg/l, respectively, <i>p</i> = .007). Higher serum levels of endostatin were associated with a diminished decline in nocturnal blood pressure adjusted for age, sex, HbA1c, mean systolic day blood pressure, hypertension treatment, glomerular filtration rate, and prevalent cardiovascular disease (regression coefficient per SD increase of endostatin −0.01, 95% CI, −0.02–(−0.001), <i>p</i> = .03). Structural equation modelling analyses suggest that endostatin mediates 7% of the association between non-dipping and major cardiovascular events. <b>Conclusion:</b> We found an independent association between higher circulating levels of endostatin and a reduced difference between day- and night-time systolic blood pressure in patients with type 2 diabetes. Yet endostatin mediated only a small portion of the association between non-dipping and cardiovascular events arguing against a clinical utility of our findings.
DOI: 10.6084/m9.figshare.5932699.v1
title: The association between circulating endostatin and a disturbed circadian blood pressure pattern in patients with type 2 diabetes

description: <b>Background:</b> Endostatin, cleaved from collagen XVIII in the extracellular matrix, is a promising circulating biomarker for cardiovascular damage. It possesses anti-angiogenic and anti-fibrotic functions and has even been suggested to be involved in blood pressure regulation. Less is known if endostatin levels relate to circadian blood pressure patterns. In the present paper we studied the association between circulating levels of endostatin and nocturnal dipping in blood pressure. <b>Methods:</b> We used the CARDIPP-study, a cohort of middle aged, type 2 diabetics (<i>n</i> = 593, 32% women), with data on both 24-hour and office blood pressure, serum-endostatin, cardiovascular risk factors, and incident major cardiovascular events. Nocturnal dipping was defined as a &gt;10% difference between day- and night-time blood pressures. <b>Results:</b> Two-hundred four participants (34%) were classified as non-dippers. The mean endostatin levels were significantly higher in non-dippers compared to dippers (mean ± standard deviation: 62.6 ± 1.8 µg/l vs. 58.7 ± 1.6 µg/l, respectively, <i>p</i> = .007). Higher serum levels of endostatin were associated with a diminished decline in nocturnal blood pressure adjusted for age, sex, HbA1c, mean systolic day blood pressure, hypertension treatment, glomerular filtration rate, and prevalent cardiovascular disease (regression coefficient per SD increase of endostatin −0.01, 95% CI, −0.02–(−0.001), <i>p</i> = .03). Structural equation modelling analyses suggest that endostatin mediates 7% of the association between non-dipping and major cardiovascular events. <b>Conclusion:</b> We found an independent association between higher circulating levels of endostatin and a reduced difference between day- and night-time systolic blood pressure in patients with type 2 diabetes. Yet endostatin mediated only a small portion of the association between non-dipping and cardiovascular events arguing against a clinical utility of our findings.
DOI: 10.6084/m9.figshare.5932696
title: Anvi'o files DISTAL MG manual binning

description: Files include:<br>#1: Raw assembly (scaffolds &gt;1,000nt) of the DISTAL metagenome using metaSPAdes v.3.11.0 .<br>#2: Anvi'o v.3 files generated for manual binning of the DISTAL metagenomic assembly using reads recruited from three metagenomes.<br>Metagenomes were first published at:<br>---<b>https://www.nature.com/articles/ismej201259<br></b>---<br>Credit for generating the metagenomes goes to Olivia Mason and Janet Jansson.
DOI: 10.6084/m9.figshare.5932696.v1
title: Anvi'o files DISTAL MG manual binning

description: Files include:<br>#1: Raw assembly (scaffolds &gt;1,000nt) of the DISTAL metagenome using metaSPAdes v.3.11.0 .<br>#2: Anvi'o v.3 files generated for manual binning of the DISTAL metagenomic assembly using reads recruited from three metagenomes.<br>Metagenomes were first published at:<br>---<b>https://www.nature.com/articles/ismej201259<br></b>---<br>Credit for generating the metagenomes goes to Olivia Mason and Janet Jansson.
DOI: 10.6084/m9.figshare.5932357
title: Circular movement of honey bee spermatozoa inside spermatheca

description: It is believed that in honey bees spermatozoa stored inside the spermatheca remain motionless, however, some studies have reported the contrary. To observe behaviour of spermatozoa inside spermathecae, we have instrumentally inseminated queens with spermatozoa stained with fluorescent stains. During the first 8 h after insemination movement of the spermatozoa was stationary, without fast forward movement. Later, we observed circular movement of the spermatozoa inside spermathecae. Numerous circles were visible at one time. The circles were located close to the spermathecal wall. Movement of the spermatozoa was also observed in spermathecae of naturally inseminated queens. The marble-like pattern of the spermathecae was changing. The changes were slow and well visible only when video recordings were played at high speed.
DOI: 10.6084/m9.figshare.5932354
title: Combining Bayesian method and Kalman smoother for detection additive outlier patches in autoregressive time series

description: This article proposes a development of detecting patches of additive outliers in autoregressive time series models. The procedure improves the existing detection methods via Gibbs sampling. We combine the Bayesian method and the Kalman smoother to present some candidate models of outlier patches and the best model with the minimum Bayesian information criterion (BIC) is selected among them. We propose that this combined Bayesian and Kalman method (CBK) can reduce the masking and swamping effects about detecting patches of additive outliers. The correctness of the method is illustrated by simulated data and then by analyzing a real set of observations.
DOI: 10.6084/m9.figshare.5932354.v1
title: Combining Bayesian method and Kalman smoother for detection additive outlier patches in autoregressive time series

description: This article proposes a development of detecting patches of additive outliers in autoregressive time series models. The procedure improves the existing detection methods via Gibbs sampling. We combine the Bayesian method and the Kalman smoother to present some candidate models of outlier patches and the best model with the minimum Bayesian information criterion (BIC) is selected among them. We propose that this combined Bayesian and Kalman method (CBK) can reduce the masking and swamping effects about detecting patches of additive outliers. The correctness of the method is illustrated by simulated data and then by analyzing a real set of observations.
DOI: 10.4225/03/5aa1d20d4e544
title: Ghedini, White & Marshall (2018) Metabolic scaling across succession: do individual rates predict community-level energy use? Functional Ecology

description: A series of data on the species composition of sessile invertebrate communities at different successional stages, community total mass and metabolism. In addition, there are species-specific metabolic rates, area-mass relationships, body size distributions and abundance for the three dominant species in the community (Pyura, tubeworms and Watersipora) which we used to estimate overall community metabolism.
DOI: 10.6084/m9.figshare.5932267
title: MOESM1 of User characteristics that influence judgment of social engineering attacks in social networks

description: Additional file 1. The dataset used in this study.