cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/9b1906acca8c283c975e6461e2fd4c41
title: Jornada Basin LTER: Wireless meteorological station at NPP M-NORT site: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at NPP M-NORT met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured every 30 minutes at an automated meteorological station installed at Jornada LTER NPP M-NORT site. Measurements are made every 30 minutes at 10 cm, 20 cm, and 30 cm soil depths. This is an ONGOING dataset.
DOI: 10.15468/dl.xme63q
title: Occurrence Download

description: A dataset containing 8872 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tetropium castaneum (Linnaeus, 1758)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8872 records from 193 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005339-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5wsj9g
title: Occurrence Download

description: A dataset containing 1891 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Urochloa panicoides P.Beauv.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 1891 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005340-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28063355
title: Whole genome analysis revealed the role of <i>bla</i><sub>OXA-23</sub> and <i>bla</i><sub>OXA-66</sub> genes in carbapenem resistance of <i>Acinetobacter baumannii</i> strains

description: <i>Acinetobacter baumannii</i> is a multidrug-resistant bacterium that has emerged as a significant nosocomial pathogen globally and renowned for its ability to acquire antimicrobial resistance (AMR) genes. However, understanding of its resistance mechanisms to certain drug classes remains limited. This study focused on four bacterial strains (AB863, AB889, AB930, and AB960) exhibiting carbapenem resistance. They demonstrated high minimum inhibitory concentration (MIC) (128 mg/L) to meropenem and were categorized as extensively drug-resistant strains. Subsequently, they were identified as <i>A. baumannii</i> through 16S rRNA gene sequence analysis and species-specific PCR targeting the <i>bla</i><sub>OXA51</sub>-like gene. Three strains were sequenced for their genomes to study the genetic determinants and functional relevance of carbapenem resistance. The draft genome length of the strains ranged from 3.8 to 4.0 Mbp. A total of 16 antibiotic resistance genes including the genes <i>bla</i><sub>OXA-23</sub> and <i>bla</i><sub>OXA-66</sub> which mediate carbapenem resistance were identified in the genomes. A comprehensive multilocus sequence typing analysis involving 95 <i>A. baumannii</i> strains from different Asian countries assigned the four strains to sequence type 2 (ST2), the most predominant ST circulating in Asia. Comparative genome analysis also revealed <i>bla</i><sub>OXA-66</sub> as the most dominant variant of <i>bla</i><sub>OXA-51</sub>-like gene and also a widespread distribution of <i>bla</i><sub>OXA-23</sub> gene. In addition, various mobile genetic elements associated with AMR genes and three efflux pumps families were detected in the genomes of the strains. Transformation of <i>bla</i><sub>OXA-23</sub> and <i>bla</i><sub>OXA-66</sub> genes resulted in meropenem resistance in the transformant which exhibited a MIC of 2 mg/L, thus confirming direct involvement of both genes in carbapenem resistance.
DOI: 10.6084/m9.figshare.28063355.v1
title: Whole genome analysis revealed the role of <i>bla</i><sub>OXA-23</sub> and <i>bla</i><sub>OXA-66</sub> genes in carbapenem resistance of <i>Acinetobacter baumannii</i> strains

description: <i>Acinetobacter baumannii</i> is a multidrug-resistant bacterium that has emerged as a significant nosocomial pathogen globally and renowned for its ability to acquire antimicrobial resistance (AMR) genes. However, understanding of its resistance mechanisms to certain drug classes remains limited. This study focused on four bacterial strains (AB863, AB889, AB930, and AB960) exhibiting carbapenem resistance. They demonstrated high minimum inhibitory concentration (MIC) (128 mg/L) to meropenem and were categorized as extensively drug-resistant strains. Subsequently, they were identified as <i>A. baumannii</i> through 16S rRNA gene sequence analysis and species-specific PCR targeting the <i>bla</i><sub>OXA51</sub>-like gene. Three strains were sequenced for their genomes to study the genetic determinants and functional relevance of carbapenem resistance. The draft genome length of the strains ranged from 3.8 to 4.0 Mbp. A total of 16 antibiotic resistance genes including the genes <i>bla</i><sub>OXA-23</sub> and <i>bla</i><sub>OXA-66</sub> which mediate carbapenem resistance were identified in the genomes. A comprehensive multilocus sequence typing analysis involving 95 <i>A. baumannii</i> strains from different Asian countries assigned the four strains to sequence type 2 (ST2), the most predominant ST circulating in Asia. Comparative genome analysis also revealed <i>bla</i><sub>OXA-66</sub> as the most dominant variant of <i>bla</i><sub>OXA-51</sub>-like gene and also a widespread distribution of <i>bla</i><sub>OXA-23</sub> gene. In addition, various mobile genetic elements associated with AMR genes and three efflux pumps families were detected in the genomes of the strains. Transformation of <i>bla</i><sub>OXA-23</sub> and <i>bla</i><sub>OXA-66</sub> genes resulted in meropenem resistance in the transformant which exhibited a MIC of 2 mg/L, thus confirming direct involvement of both genes in carbapenem resistance.
DOI: 10.15468/dl.pk9hy2
title: Occurrence Download

description: A dataset containing 986 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Urochloa plantaginea (Link) R.D.Webster)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 986 records from 142 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005343-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13023/2024.alum.203
title: Cabbage

description: Includes data on the aluminum content of cabbage
DOI: 10.15468/dl.ygqkag
title: Occurrence Download

description: A dataset containing 42112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Syngrapha interrogationis (Linnaeus, 1758)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 42112 records from 163 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005344-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wr2mcc
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-5.993862434242636 39.83684200699332,-5.992285510537548 39.83684200699332,-5.992285510537548 39.83841893069841,-5.993862434242636 39.83841893069841,-5.993862434242636 39.83684200699332))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Delichon urbicum (Linnaeus, 1758)",
 "Year 2014-2025"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005345-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14416728
title: Unveiling Correlations in Metal-Organic Interface Properties: A Computational Exploration of Alternant and Non-Alternant π-Electron Systems

description: Computational data underlying the publication of the same name.
DOI: 10.5281/zenodo.14416729
title: Unveiling Correlations in Metal-Organic Interface Properties: A Computational Exploration of Alternant and Non-Alternant π-Electron Systems

description: Computational data underlying the publication of the same name.
DOI: 10.15468/dl.zbkzec
title: Occurrence Download

description: A dataset containing 1080 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Urochloa reptans (L.) Stapf)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 1080 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005346-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zkgbtx
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhizoecus simplex (Hambleton, 1946)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005347-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13023/2024.alum.204
title: Pepper

description: Includes data on the aluminum content of pepper
DOI: 10.15468/dl.89dzxw
title: Occurrence Download

description: A dataset containing 473 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Israel",
 "TaxonKey is Opuntia ficus-indica (L.) Mill."
 ]
}

 The dataset includes 473 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005348-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cb232s
title: Occurrence Download

description: A dataset containing 4234228 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aves)",
 "BasisOfRecord is Specimen",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 4234228 records from 479 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005342-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.bko1d5ck
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (15 records)
DOI: 10.15468/dl.ssvyqd
title: Occurrence Download

description: A dataset containing 1362 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Urochloa subquadripara (Trin.) R.D.Webster)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 1362 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005349-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14861211
title: Multi-omics highlights challenges in assessing the composition and performance of microbial consortia for commercial applications

description: Supplementary data and code for "Multi-omics highlights challenges in assessing the composition and performance of microbial consortia for commercial applications".

rRNAProbesandFasta.zip contains the rRNA sequences covering a substantial proportion of rRNA undepleted by Ribo-Zero Plus and the generated probe sequences from these sequences for synthesis for supplementary depletion.

The combined 98 MAGs from short- and long-reads discussed in the manuscript are available in 98_MAGs.tar.gz.

SqueezeExtBins.zip and SqueezeCoassemblyNF.zip contain the sqm2zip outputs for an external bins provided analysis (98_MAGs.tar.gz) and the complete SqueezeMeta workflow using coassembly on the DNA and RNA short read datasets generated. These files can be imported via SQMtools for analysis.

Additional details are available at: https://github.com/carleton-envbiotech/Consortium_meta_omics/

BioProject with SRA deposit for raw data available at: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1165788
DOI: 10.5281/zenodo.15001687
title: Multi-omics highlights challenges in assessing the composition and performance of microbial consortia for commercial applications

description: Supplementary data and code for "Multi-omics highlights challenges in assessing the composition and performance of microbial consortia for commercial applications".

rRNAProbesandFasta.zip contains the rRNA sequences covering a substantial proportion of rRNA undepleted by Ribo-Zero Plus and the generated probe sequences from these sequences for synthesis for supplementary depletion.

The combined 98 MAGs from short- and long-reads discussed in the manuscript are available in 98_MAGs.tar.gz.

SqueezeExtBins.zip and SqueezeCoassemblyNF.zip contain the sqm2zip outputs for an external bins provided analysis (98_MAGs.tar.gz) and the complete SqueezeMeta workflow using coassembly on the DNA and RNA short read datasets generated. These files can be imported via SQMtools for analysis.

Ribosomal rRNA after RiboZeroPlus depletions is provided in:






NitrifyingRNA_Day0_RiboZeroPlusKit_combinedribo_R1.fastq.gz

NitrifyingRNA_Day0_RiboZeroPlusKit_combinedribo_R2.fastq.gz





The MAGs used in the supplemental rRNA probe design are in: 






SupplementalProbe_MAGs.zip





The unaligned rRNA reads not matching the above MAGs are in:

unaligned_reads.1.fastq.gz






unaligned_reads.2.fastq.gz





Additional details are available at: https://github.com/carleton-envbiotech/Consortium_meta_omics/

BioProject with SRA deposit for raw data available at: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1165788
DOI: 10.25549/independent-c69-9401
title: Analysis (4 of 4), 1991 Apr.-June

description: Analysis (4 of 4), 1991 April 2 - June 30. Duplicates (Some may be superceded). PART OF A SERIES: To ascertain misconduct on the part of LAPD officers, the Independent Commission set out to probe databases maintained by the LAPD related to four areas: personnel complaints, use of force, officer-involved shootings (OIS), and the use of dogs (K-9). This task was delegated to the firm Freeman & Mills, which was responsible for obtaining these databases from the LAPD, converting pertinent data into useable formats, creating additional databases of additional information, and analyzing its findings. The series contains items related to Freeman & Mills' work product, including numerous analyses of use-of-force, OIS, and K-9 data; weekly complaint summary printouts; graphs, charts, tables, and other visual representations of this data; and computer directory lists that provide the names and locations of files within the LAPD's databases. At the end of the series is a draft copy of the Independent Commission's final report, which incorporates many of the aforementioned data and figures.
DOI: 10.25549/independent-c69-9356
title: Analysis (4 of 4), 1991 Apr.-June

description: Analysis (4 of 4), 1991 April 2 - June 30. Duplicates (Some may be superceded). PART OF A SERIES: To ascertain misconduct on the part of LAPD officers, the Independent Commission set out to probe databases maintained by the LAPD related to four areas: personnel complaints, use of force, officer-involved shootings (OIS), and the use of dogs (K-9). This task was delegated to the firm Freeman & Mills, which was responsible for obtaining these databases from the LAPD, converting pertinent data into useable formats, creating additional databases of additional information, and analyzing its findings. The series contains items related to Freeman & Mills' work product, including numerous analyses of use-of-force, OIS, and K-9 data; weekly complaint summary printouts; graphs, charts, tables, and other visual representations of this data; and computer directory lists that provide the names and locations of files within the LAPD's databases. At the end of the series is a draft copy of the Independent Commission's final report, which incorporates many of the aforementioned data and figures.
DOI: 10.15468/dl.j1foib
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is South Africa",
 "Country is Lesotho"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Ornithogalum graminifolium Thunb.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 158 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001235-171113114016250/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rrmesg
title: Occurrence Download

description: A dataset containing 1242 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Pseuderanthemum tunicatum (Afzel.) Milne-Redh."
 ]
}

 The dataset includes 1242 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0176779-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-9379
title: Analysis (4 of 4), 1991 Apr.-June

description: Analysis (4 of 4), 1991 April 2 - June 30. Duplicates (Some may be superceded). PART OF A SERIES: To ascertain misconduct on the part of LAPD officers, the Independent Commission set out to probe databases maintained by the LAPD related to four areas: personnel complaints, use of force, officer-involved shootings (OIS), and the use of dogs (K-9). This task was delegated to the firm Freeman & Mills, which was responsible for obtaining these databases from the LAPD, converting pertinent data into useable formats, creating additional databases of additional information, and analyzing its findings. The series contains items related to Freeman & Mills' work product, including numerous analyses of use-of-force, OIS, and K-9 data; weekly complaint summary printouts; graphs, charts, tables, and other visual representations of this data; and computer directory lists that provide the names and locations of files within the LAPD's databases. At the end of the series is a draft copy of the Independent Commission's final report, which incorporates many of the aforementioned data and figures.
DOI: 10.15468/dl.mvz4tf
title: Occurrence Download

description: A dataset containing 256 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dioscorea chouardii Gaussen"
 ]
}

 The dataset includes 256 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0176774-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xh3suk
title: Occurrence Download

description: A dataset containing 295 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "Month is November",
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasCoordinate is true",
 "TaxonKey is Leucosticte atrata Ridgway, 1874",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 295 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001235-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-9363
title: Analysis (4 of 4), 1991 Apr.-June

description: Analysis (4 of 4), 1991 April 2 - June 30. Duplicates (Some may be superceded). PART OF A SERIES: To ascertain misconduct on the part of LAPD officers, the Independent Commission set out to probe databases maintained by the LAPD related to four areas: personnel complaints, use of force, officer-involved shootings (OIS), and the use of dogs (K-9). This task was delegated to the firm Freeman & Mills, which was responsible for obtaining these databases from the LAPD, converting pertinent data into useable formats, creating additional databases of additional information, and analyzing its findings. The series contains items related to Freeman & Mills' work product, including numerous analyses of use-of-force, OIS, and K-9 data; weekly complaint summary printouts; graphs, charts, tables, and other visual representations of this data; and computer directory lists that provide the names and locations of files within the LAPD's databases. At the end of the series is a draft copy of the Independent Commission's final report, which incorporates many of the aforementioned data and figures.
DOI: 10.25549/independent-c69-10033
title: Reiser, Dr. Martin, 1991 Apr.-May

description: Reiser, Dr. Martin, 1991 April 29 - May 20. PART OF A SERIES: The staff of Gibson, Dunn & Crutcher coordinated witness interviews and conducted an extensive review of complaints filed against LAPD officers. Included in the series are summaries of witness interviews, statistics and investigative reports related to citizen complaints, an analysis on adjudicated cases involving use-of-force complaints, reports regarding LAPD's recruitment of African American officers and community oriented policing, and an excerpt from Malcolm Sparrow's Beyond 9-1-1. Also included are materials related to the firm's work product, including attorney notes, work plans, memoranda, and drafts of chapters for the Commission report.
DOI: 10.15468/dl.sgp3q0
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Singapore",
 "TaxonKey is Luciocephalus pulcher (Gray, 1830)"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001541-171109162308116/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.