cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3665944_d1
title: Additional file 2: of Widespread introgression in deep-sea hydrothermal vent mussels

description: Table S2. Frequencies of the B. azoricus-specific SNP allele in the eight sampled mussel populations; Table S3. SNP genotype and ND4 haplotype data for each individual of the 8 sampled localities. 1 = c54079_g1_i1, 2 = c59751_g2_i3, 3 = c12535_g1_i1, 4 = c36135_g1_i2, 5 = c40452_g1_i1, 6 = c61080_g8_i1, 7 = c62359_g8_i4, 8 = c23539_g1_i1, 9 = c34434_g1_i1, 10 = c41151_g1_i3, 11 = c58708_g7_i1, 12 = c55170_g1_i1, 13 = c47041_g1_i1, 14 = c29533_g1_i1, 15 = c61290_g11_i1, 16 = c59181_g1_i1, 17 = c42562_g1_i1, 18 = c35975_g1_i1; Table S4. Fluidigm primer information (5′ to 3′) and putative gene functions of the 18 SNP loci investigated in this study. ASP1 = SNP allele detected with allele-specific primer 1, ASP2 = SNP allele detected with allele-specific primer 2, SNP_SEQ = sequence of the amplified fragment containing the SNP, ASP1_SEQ = sequence of allele-specific primer 1, ASP2_SEQ = sequence of allele-specific primer 2, LSP_SEQ = sequence of locus-specific reverse primer, STA_SEQ = sequence of forward primer for specific target amplification, AMP_GC = proportional GC content, REFSEQ = blast annotation in the RefSeq protein database, SWISSPROT = blast annotation in the Swiss-Prot database, TREMBL = blast annotation in the TrEMBL database. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.c.3666331_d1.v1
title: Additional file 1: Table S1. of Genomic characterization of Ensifer aridi, a proposed new species of nitrogen-fixing rhizobium recovered from Asian, African and American deserts

description: Nodulation tests on selected leguminous plants. Table S2. Primer efficiencies and correlation factors obtained from quantitative PCR assays. Table S3. List of strains and species used for the phylogenetic analysis (Table S3A) and list of 103 E. meliloti 1021 genes used for the phylogenetic analysis (Table S3B). Table S4. PEG lists from desert isolates corresponding to the 103 most conserved genes among alpha-rhizobia (Table S4A), 84 orthologous genes carried by pSymA in E. meliloti 1021 (Table S4B) or 55 selected genes carried by pSymB (Table S4C). Table S5. Genome sequencing and assembly overviews. Table S6. Frequency of predicted ISs in relation to IS families in the 4 compared Ensifer species. Table S7. Identification of species specific and complete KEGG modules in the 4 compared Ensifer species. Table S8. Phenotypic characteristics. (XLSX 63 kb)
DOI: 10.6084/m9.figshare.c.3666331_d1
title: Additional file 1: Table S1. of Genomic characterization of Ensifer aridi, a proposed new species of nitrogen-fixing rhizobium recovered from Asian, African and American deserts

description: Nodulation tests on selected leguminous plants. Table S2. Primer efficiencies and correlation factors obtained from quantitative PCR assays. Table S3. List of strains and species used for the phylogenetic analysis (Table S3A) and list of 103 E. meliloti 1021 genes used for the phylogenetic analysis (Table S3B). Table S4. PEG lists from desert isolates corresponding to the 103 most conserved genes among alpha-rhizobia (Table S4A), 84 orthologous genes carried by pSymA in E. meliloti 1021 (Table S4B) or 55 selected genes carried by pSymB (Table S4C). Table S5. Genome sequencing and assembly overviews. Table S6. Frequency of predicted ISs in relation to IS families in the 4 compared Ensifer species. Table S7. Identification of species specific and complete KEGG modules in the 4 compared Ensifer species. Table S8. Phenotypic characteristics. (XLSX 63 kb)
DOI: 10.6084/m9.figshare.c.3666373_d2.v1
title: Additional file 1 of TTCA: an R package for the identification of differentially expressed genes in time course microarray data

description: R code of TTCA (EUPL). (TXT 816 kb)
DOI: 10.6084/m9.figshare.c.3666388_d1.v1
title: Additional file 3: of iGCâ  an integrated analysis package of gene expression and copy number alteration

description: The introduction page of the package iGC. (HTML 96 kb)
DOI: 10.6084/m9.figshare.c.3666388_d1
title: Additional file 3: of iGCâ  an integrated analysis package of gene expression and copy number alteration

description: The introduction page of the package iGC. (HTML 96 kb)
DOI: 10.6084/m9.figshare.c.3666406_d1.v1
title: Additional file 1 of Predicting probable Alzheimerâ  s disease using linguistic deficits and biomarkers

description: Machine Learning files for all the models presented in our results, including baseline models. These files contain the transformed linguistic features from the DementiaBank dataset for both disease and control groups combined. The files appear in the WEKA Attribute-Relation File Format (ARFF). (ZIP 78.5 kb)
DOI: 10.6084/m9.figshare.c.3666406_d2.v1
title: Additional file 2 of Predicting probable Alzheimerâ  s disease using linguistic deficits and biomarkers

description: Raw transformed data. These files contain the transformed linguistic features from the DementiaBank dataset and appear in the Comma Separated Values file format. (ZIP 18.4 kb)
DOI: 10.6084/m9.figshare.c.3666406_d1
title: Additional file 1 of Predicting probable Alzheimerâ  s disease using linguistic deficits and biomarkers

description: Machine Learning files for all the models presented in our results, including baseline models. These files contain the transformed linguistic features from the DementiaBank dataset for both disease and control groups combined. The files appear in the WEKA Attribute-Relation File Format (ARFF). (ZIP 78.5 kb)
DOI: 10.6084/m9.figshare.c.3666406_d2
title: Additional file 2 of Predicting probable Alzheimerâ  s disease using linguistic deficits and biomarkers

description: Raw transformed data. These files contain the transformed linguistic features from the DementiaBank dataset and appear in the Comma Separated Values file format. (ZIP 18.4 kb)
DOI: 10.6084/m9.figshare.c.3666643_d1
title: Additional file 4: Table S4. of GAVIN: Gene-Aware Variant INterpretation for medical sequencing

description: The tools used to evaluate our benchmark variant set and the web addresses used through which they were accessed. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3666643_d2.v1
title: Additional file 2: Table S2. of GAVIN: Gene-Aware Variant INterpretation for medical sequencing

description: Detailed overview of all benchmark results. Each combination of tool and dataset is listed. We provide the raw counts of true positives (TP), true negatives (TN), false positives (FP), and false negatives (FN), as well as of pathogenic and benign variants that were â  missed,â   i.e. not correctly identified as such. From these numbers, we calculated the sensitivity and specificity. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.c.3666643_d2
title: Additional file 2: Table S2. of GAVIN: Gene-Aware Variant INterpretation for medical sequencing

description: Detailed overview of all benchmark results. Each combination of tool and dataset is listed. We provide the raw counts of true positives (TP), true negatives (TN), false positives (FP), and false negatives (FN), as well as of pathogenic and benign variants that were â  missed,â   i.e. not correctly identified as such. From these numbers, we calculated the sensitivity and specificity. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.c.3666643_d3.v1
title: Additional file 3: Table S3. of GAVIN: Gene-Aware Variant INterpretation for medical sequencing

description: Estimate of the practical impact in clinical diagnostics of using methods of different sensitivity and specificity on a dataset with 100 benign and 10 pathogenic variants. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3666643_d3
title: Additional file 3: Table S3. of GAVIN: Gene-Aware Variant INterpretation for medical sequencing

description: Estimate of the practical impact in clinical diagnostics of using methods of different sensitivity and specificity on a dataset with 100 benign and 10 pathogenic variants. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3666643_d4.v1
title: Additional file 1: Table S1. of GAVIN: Gene-Aware Variant INterpretation for medical sequencing

description: GAVIN gene-specific thresholds used in the benchmark. This table can be used to look up thresholds of individual genes and allow variant interpretation by following classification rules as indicated by the column names and provided explanation. (XLSX 198 kb)
DOI: 10.6084/m9.figshare.c.3666643_d4
title: Additional file 1: Table S1. of GAVIN: Gene-Aware Variant INterpretation for medical sequencing

description: GAVIN gene-specific thresholds used in the benchmark. This table can be used to look up thresholds of individual genes and allow variant interpretation by following classification rules as indicated by the column names and provided explanation. (XLSX 198 kb)
DOI: 10.6084/m9.figshare.c.3667390_d1.v1
title: Additional file 4. of Weighing as a stand-alone intervention does not reduce excessive gestational weight gain compared to routine antenatal care: a systematic review and meta-analysis of randomised controlled trials

description: Spreadsheet of values used for data analysis. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3667381_d4.v1
title: Additional file 8: Table S6. of The unique genomic landscape surrounding the EPSPS gene in glyphosate resistant Amaranthus palmeri: a repetitive path to resistance

description: Alignment of the resistant (R) and sensitive (S) whole genome shotgun reads to gene sequences located distal to the EPSPS genomic interval. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3667381_d4
title: Additional file 8: Table S6. of The unique genomic landscape surrounding the EPSPS gene in glyphosate resistant Amaranthus palmeri: a repetitive path to resistance

description: Alignment of the resistant (R) and sensitive (S) whole genome shotgun reads to gene sequences located distal to the EPSPS genomic interval. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3667381_d5.v1
title: Additional file 7: Table S5. of The unique genomic landscape surrounding the EPSPS gene in glyphosate resistant Amaranthus palmeri: a repetitive path to resistance

description: Read mapping summary for the resistant and sensitive WGS. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3667405_d5.v1
title: Additional file 4: Figure S2. of Renal function in patients with non-dialysis chronic kidney disease receiving intravenous ferric carboxymaltose: an analysis of the randomized FIND-CKD trial

description: (a) Ferritin and (b) transferrin saturation (TSAT) for patients with eGFR values at baseline and month 12 who did or did not receive alternative anemia therapy or permanently discontinued study therapy before month 12. BL, baseline; FCM, ferric carboxymaltose. (ZIP 456Â kb)
DOI: 10.6084/m9.figshare.c.3667426_d2.v1
title: Additional file 2: of Diet, gonadal sex, and sex chromosome complement influence white adipose tissue miRNA expression

description: 256 miRNAs that mapped to 82 unique sequences. (TXT 5Â kb)
DOI: 10.6084/m9.figshare.c.3667381_d8
title: Additional file 16: Table S10. of The unique genomic landscape surrounding the EPSPS gene in glyphosate resistant Amaranthus palmeri: a repetitive path to resistance

description: Flow cytometry genome sizing data for 5 genotypes that indicate significant differences in size that correlates with EPSPS gene copy number. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3667423_d3.v1
title: Additional file 3: Table S1. of ARA-PEPs: a repository of putative sORF-encoded peptides in Arabidopsis thaliana

description: Yield statistics table showing the number of bases, number of reads and read length after read pre-processing. (XLS 28Â kb)
DOI: 10.6084/m9.figshare.c.3667426_d2
title: Additional file 2: of Diet, gonadal sex, and sex chromosome complement influence white adipose tissue miRNA expression

description: 256 miRNAs that mapped to 82 unique sequences. (TXT 5Â kb)
DOI: 10.6084/m9.figshare.c.3667435_d2.v1
title: Additional file 1: of Are interventions to increase the uptake of screening for cardiovascular disease risk factors effective? A systematic review and meta-analysis

description: Characteristics of included study. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3667381_d9.v1
title: Additional file 3: Table S2. of The unique genomic landscape surrounding the EPSPS gene in glyphosate resistant Amaranthus palmeri: a repetitive path to resistance

description: EPSPS gene copy number determination by qRT-PCR. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3667423_d3
title: Additional file 3: Table S1. of ARA-PEPs: a repository of putative sORF-encoded peptides in Arabidopsis thaliana

description: Yield statistics table showing the number of bases, number of reads and read length after read pre-processing. (XLS 28Â kb)
DOI: 10.6084/m9.figshare.c.3667435_d2
title: Additional file 1: of Are interventions to increase the uptake of screening for cardiovascular disease risk factors effective? A systematic review and meta-analysis

description: Characteristics of included study. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3667426_d3.v1
title: Additional file 4: of Diet, gonadal sex, and sex chromosome complement influence white adipose tissue miRNA expression

description: Count table summarizing read counts for 1841 mature and precursor miRNA sequences in fifteen sequencing libraries. Perfectly matched counts are normalized to total library reads per million. (XLS 512Â kb)
DOI: 10.6084/m9.figshare.c.3667381_d9
title: Additional file 3: Table S2. of The unique genomic landscape surrounding the EPSPS gene in glyphosate resistant Amaranthus palmeri: a repetitive path to resistance

description: EPSPS gene copy number determination by qRT-PCR. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3667426_d3
title: Additional file 4: of Diet, gonadal sex, and sex chromosome complement influence white adipose tissue miRNA expression

description: Count table summarizing read counts for 1841 mature and precursor miRNA sequences in fifteen sequencing libraries. Perfectly matched counts are normalized to total library reads per million. (XLS 512Â kb)
DOI: 10.5281/zenodo.14510966
title: Dataset for Effects of treated effluent discharge on tree growth and water use in a cypress swamp

description: Data and R script used for Schexnayder and Wolfe (2025). 

Schexnayder D, Wolfe BT (2025) Effects of treated effluent discharge on tree growth and water use in a cypress swamp. Wetlands. In press.
DOI: 10.5281/zenodo.14510967
title: Dataset for Effects of treated effluent discharge on tree growth and water use in a cypress swamp

description: Data and R script used for Schexnayder and Wolfe (2025). 

Schexnayder D, Wolfe BT (2025) Effects of treated effluent discharge on tree growth and water use in a cypress swamp. Wetlands. In press.
DOI: 10.6084/m9.figshare.c.3667414_d5.v1
title: Additional file 5: of Development and validation of SEER (Seeking, Engaging with and Evaluating Research): a measure of policymakersâ   capacity to engage with and use research

description: Excel file reporting correlation between SEER and theory of planned behaviour scale scores with confidence intervals and standard errors. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3667414_d5
title: Additional file 5: of Development and validation of SEER (Seeking, Engaging with and Evaluating Research): a measure of policymakersâ   capacity to engage with and use research

description: Excel file reporting correlation between SEER and theory of planned behaviour scale scores with confidence intervals and standard errors. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3667438_d6
title: Additional file 12 of Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models

description: The data and code for running the analysis for lactamase. This is a 7-Zip file containing an iPython notebook and the relevant data files. (7z 2692 kb)
DOI: 10.6084/m9.figshare.c.3667435_d4
title: Additional file 3: of Are interventions to increase the uptake of screening for cardiovascular disease risk factors effective? A systematic review and meta-analysis

description: The TIDieR checklist. (XLSX 63 kb)
DOI: 10.6084/m9.figshare.c.3667435_d4.v1
title: Additional file 3: of Are interventions to increase the uptake of screening for cardiovascular disease risk factors effective? A systematic review and meta-analysis

description: The TIDieR checklist. (XLSX 63 kb)
DOI: 10.6084/m9.figshare.c.3667381_d16.v1
title: Additional file 6: Table S4. of The unique genomic landscape surrounding the EPSPS gene in glyphosate resistant Amaranthus palmeri: a repetitive path to resistance

description: Predicted helitrons in the EPSPS amplicon with an LCV score of at least 3. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3667381_d16
title: Additional file 6: Table S4. of The unique genomic landscape surrounding the EPSPS gene in glyphosate resistant Amaranthus palmeri: a repetitive path to resistance

description: Predicted helitrons in the EPSPS amplicon with an LCV score of at least 3. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3667438_d14
title: Additional file 15 of Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models

description: The data and code for running the pyvolve simulations. This is a 7-Zip file containing an iPython notebook and the relevant data files. (7Z 7450 kb)
DOI: 10.6084/m9.figshare.c.3667438_d14.v1
title: Additional file 15 of Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models

description: The data and code for running the pyvolve simulations. This is a 7-Zip file containing an iPython notebook and the relevant data files. (7Z 7450 kb)
DOI: 10.6084/m9.figshare.c.3667456_d3.v1
title: Additional file 3: of Community-based health care is an essential component of a resilient health system: evidence from Ebola outbreak in Liberia

description: gCHV Survey Data. This is the raw data collected during the CHW survey. (XLSX 32Â kb)
DOI: 10.6084/m9.figshare.c.3667456_d3
title: Additional file 3: of Community-based health care is an essential component of a resilient health system: evidence from Ebola outbreak in Liberia

description: gCHV Survey Data. This is the raw data collected during the CHW survey. (XLSX 32Â kb)
DOI: 10.6084/m9.figshare.c.3667468_d1.v1
title: Additional file 1: of PCM-SABRE: a platform for benchmarking and comparing outcome prediction methods in precision cancer medicine

description: PCM-SABRE Library. PCM-SABRE KNIME workflow. (RAR 45850Â kb)
DOI: 10.6084/m9.figshare.c.3667489_d2.v1
title: Additional file 3: of Screening for potential genes associated with bone overgrowth after mid-shaft femur fracture in a rat model

description: TheÂ interacting pairs used for construction of the transcription regulatory network.á (XLS 24Â kb)
DOI: 10.6084/m9.figshare.c.3667489_d2
title: Additional file 3: of Screening for potential genes associated with bone overgrowth after mid-shaft femur fracture in a rat model

description: TheÂ interacting pairs used for construction of the transcription regulatory network.á (XLS 24Â kb)
DOI: 10.6084/m9.figshare.c.3667492_d1.v1
title: Additional file 1: of Medical complexity and time to lung cancer treatment – a three-year retrospective chart review

description: Medical complexity and time to lung cancer treatment. (DTA 38 kb)
DOI: 10.6084/m9.figshare.c.3667492_d1
title: Additional file 1: of Medical complexity and time to lung cancer treatment – a three-year retrospective chart review

description: Medical complexity and time to lung cancer treatment. (DTA 38 kb)
DOI: 10.6084/m9.figshare.c.3667489_d3.v1
title: Additional file 2: of Screening for potential genes associated with bone overgrowth after mid-shaft femur fracture in a rat model

description: Significant protein interactions in the PPI network.á (XLS 39Â kb)
DOI: 10.15468/dl.cpfdj8
title: Occurrence Download

description: A dataset containing 12194248 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Ecuador"
 ]
}

 The dataset includes 12194248 records from 1943 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038031-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.njekbh
title: Occurrence Download

description: A dataset containing 2007 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Medicago rotata Boiss.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2007 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023010-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xr946q
title: Occurrence Download

description: A dataset containing 10539901 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "Year 1899-2025"
 ]
}

 The dataset includes 10539901 records from 4029 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022998-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.23qwpm
title: Occurrence Download

description: A dataset containing 4207 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hymenaea courbaril L."
 ]
}

 The dataset includes 4207 records from 218 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018084-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v35cfj
title: Occurrence Download

description: A dataset containing 16703970 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Costa Rica"
 ]
}

 The dataset includes 16703970 records from 1541 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003568-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.82144/8fc26de1
title: Happywhale - False Killer Whale in South Atlantic Ocean

description: Original provider:
Happywhale

Dataset credits:
Happywhale and contributors

Abstract:
Happywhale.com is a resource to help you know whales as individuals, and to benefit conservation science with rich data about individual whales.
DOI: 10.15468/dl.jvug59
title: Occurrence Download

description: A dataset containing 361 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Vieitezia luzmurubeae Junoy, Andrade & Giribet, 2010",
 "TaxonKey is Vigna longifolia (Benth.) Verdc."
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 361 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043020-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.krhwgq
title: Occurrence Download

description: A dataset containing 68522 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is University of British Columbia - Spencer Entomological Collection (UBCZ)"
 ]
}

 The dataset includes 68522 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0221952-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6kxmck
title: Occurrence Download

description: A dataset containing 772 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Freshwater Lamprey Survey Data"
 ]
}

 The dataset includes 772 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005748-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.