cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.7mh26z
title: Occurrence Download

description: A dataset containing 4027 records in GBIF matching the query:
SELECT
 '191' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 4.045127286108716
 AND decimalLatitude &lt;= 8.098015256935714
 AND decimalLongitude &gt;= -5.0198314645534285
 AND decimalLongitude &lt;= 0.0
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 4027 records were derived from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007699-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48432/5wvd4l
title: Expressed genes in the hypothalamus of gilts cyclic and in anestrus.

description: Database containing expressed genes in the hypothalamus of sows cyclic and in anestrus. The total RNA of hypophysis of 7 cyclic and 7 gilts was extracted using Trizol (Life Technologie), followed by an RNA cleanup step using the RNeasy mini kit (Qiagen). RNA purity and concentration were measured using Biodrop spectrophotometer (Biodrop) and integrity was evaluated using Bioanalyzer 2100 (Agilent), considering samples with RIN &gt; 7.5 for further analysis. The Illumina Stranded mRNA Prep Kit using 1 μg of total RNA was used for library preparation. After pooling the libraries, clustering, and sequencing were performed in the Illumina NextSeq 2000 sequencer (lllumina) producing 2x150bp paired-end reads, LaCTAD. To perform the RNA-seq analysis BAQCOM, an automated pipeline was used for quality control (QC) and mapping analysis. In this pipeline, Trimmomatic v0.39 was used to filter low-quality reads (QPhred ≤ 20), short reads (&lt; 100bp), and Illumina sequence adapters. Once QC was performed, sequence reads of each sample were mapped against the reference pig genome (Sscrofa11.1, Ensembl release 110) using STAR. Reads counting was performed with HTseq-count and RSEM, which also generated a gene and transcript count table, respectively, for statistical analysis. The differentially expressed (DE) genes, transcripts, and the heatmap were obtained using the limma package from the R 4.2.2 software. The false discovery rate (FDR) which uses the Benjamini-Hochberg (BH) correction for multiple tests was applied and genes and transcripts with ≤ 0.05 were considered DE. Negative and positive fold changes indicate downregulation and upregulation of the genes in the anestrus (affected) compared to the cyclic (control) group.
DOI: 10.25345/c54b2xj66
title: MassIVE MSV000100568 - Single-cell transcriptional landscape of muscle-derived stem/progenitor cells reveal hallmarks of aging and rejuvenation
title: Muscle-derived stem/progenitor cells (MDSPCs) are an adult stem cell population with demonstrated regenerative and rejuvenative potential distinct from other muscle progenitor cells. However, their molecular identity and developmental status remain poorly defined. Using single-cell transcriptomic and proteomics, we comprehensively profiled murine MDSPCs across age groups. We show that MDSPCs exist along a transcriptional continuum of maturation-ranging from metabolically active, proliferative early-stage cells to late-stage, lineage-committed myogenic populations. While lacking canonical pluripotency markers, early-stage MDSPCs express gene programs associated with embryonic progenitor identity, suggesting a non-canonical, multipotent-like state. These features distinguish them from both satellite cells and committed myoblasts. Aging reshapes this continuum by reducing stemness-associated signatures while enhancing differentiation programs and oxidative stress. The identification of distinct MDSPC states provide critical insights into mechanisms underlying tissue regeneration and aging. These analyses offer a blueprint to developing future regenerative therapies for combating age-related functional decline.
DOI: 10.15468/dl.535hsr
title: Occurrence Download

description: A dataset containing 4429 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Berula erecta",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 4429 records from 266 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007720-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ax4v3e
title: Occurrence Download

description: A dataset containing 44964 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Angola",
 "DatasetKey is one of (Royal Botanic Gardens, Kew - Herbarium Specimens, Herbario LUA - Instituto Investigação Agronómica)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 44964 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007721-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vd28gm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((89.025375 23.940898, 88.948543 23.935322, 88.87362299999999 23.918729, 88.802476 23.891535, 88.736867 23.854414, 88.678422 23.808288, 88.628581 23.754301, 88.58856900000001 23.693793, 88.55936199999999 23.628259, 88.54166499999999 23.559321, 88.53589700000001 23.488679, 88.54218 23.418074, 88.56034200000001 23.349244, 88.589918 23.283878, 88.630166 23.22358, 88.680089 23.169827, 88.73845300000001 23.123934, 88.80382400000001 23.087024, 88.87460299999999 23.059996, 88.94905900000001 23.043511, 89.025375 23.037971, 89.101691 23.043511, 89.176147 23.059996, 89.246926 23.087024, 89.312297 23.123934, 89.370661 23.169827, 89.42058400000001 23.22358, 89.460832 23.283878, 89.490408 23.349244, 89.50857000000001 23.418074, 89.514853 23.488679, 89.509085 23.559321, 89.491388 23.628259, 89.462181 23.693793, 89.422169 23.754301, 89.372328 23.808288, 89.313883 23.854414, 89.24827399999999 23.891535, 89.177127 23.918729, 89.10220700000001 23.935322, 89.025375 23.940898))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007722-260120142942310/datasets/export for details.
DOI: 10.5281/zenodo.18329880
title: GDG_2025 data supplement

description: This repository contains data for the manuscript "Unexpected XIST Expression in Male Hearts Associates with Disease."

The files are generated by notebooks in the GitHub repository.

The human folder contains pseudobulks from human data. The files gg_250327_heart_celltype_psbulks.p and gg_250821_heart_data_split_by_xist.p are pickled Python dicts containing AnnData structures. The files gg_250821_female_glia_deseq.anndata.p and gg_250821_male_glia_deseq.anndata.p are pickled AnnData structures.

The bam folder contains are XIST-localized aligned reads from Larson and Chin.

The files in de_tables are tables of differential expression for various PyDESeq2 contrasts.

The files in nonhuman are scVI-clustered macaque, mouse, and pig heart datasets. 

The genome folder contains a gtf file with putative M. mulatta XIST lifted over to M. fascicularis, as well as the putative S. scrofa XIST lifted over from RefSeq 10.2 to Ensemble 11.1.

The  longread folder contains data related to the Pan et al. long-read dataset: disclosed counts and cell identities (from GSE288222 and the supplements of the original publication), kb-quantified and scVI-clustered data, a small genome reference immediately surrounding the XIST/TSIX pair, and reads that align in this region in a variety of formats.
DOI: 10.5281/zenodo.15179180
title: GDG_2025 data supplement

description: This repository contains data for the manuscript "Unexpected XIST Expression in Male Hearts Associates with Disease."

The files are generated by notebooks in the GitHub repository.

The human folder contains pseudobulks from human data. The files gg_250327_heart_celltype_psbulks.p and gg_250821_heart_data_split_by_xist.p are pickled Python dicts containing AnnData structures. The files gg_250821_female_glia_deseq.anndata.p and gg_250821_male_glia_deseq.anndata.p are pickled AnnData structures.

The bam folder contains are XIST-localized aligned reads from Larson and Chin.

The files in de_tables are tables of differential expression for various PyDESeq2 contrasts.

The files in nonhuman are scVI-clustered macaque, mouse, and pig heart datasets. 

The genome folder contains a gtf file with putative M. mulatta XIST lifted over to M. fascicularis, as well as the putative S. scrofa XIST lifted over from RefSeq 10.2 to Ensemble 11.1.

The  longread folder contains data related to the Pan et al. long-read dataset: disclosed counts and cell identities (from GSE288222 and the supplements of the original publication), kb-quantified and scVI-clustered data, a small genome reference immediately surrounding the XIST/TSIX pair, and reads that align in this region in a variety of formats.
DOI: 10.15468/dl.zvz7e8
title: Occurrence Download

description: A dataset containing 610 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((118.334 6.093137, 118.263341 6.087566, 118.194426 6.070991, 118.128956 6.043821, 118.068546 6.006725, 118.014684 5.960621, 117.968699 5.906644, 117.93172 5.846126, 117.904657 5.780559, 117.888174 5.711559, 117.882671 5.640825, 117.888282 5.570099, 117.904863 5.501123, 117.932003 5.435594, 117.969031 5.375124, 118.015034 5.321201, 118.068878 5.275149, 118.129239 5.238102, 118.194632 5.210969, 118.263449 5.194418, 118.334 5.188856, 118.404551 5.194418, 118.473368 5.210969, 118.538761 5.238102, 118.599122 5.275149, 118.652966 5.321201, 118.698969 5.375124, 118.735997 5.435594, 118.763137 5.501123, 118.779718 5.570099, 118.785329 5.640825, 118.779826 5.711559, 118.763343 5.780559, 118.73628 5.846126, 118.699301 5.906644, 118.653316 5.960621, 118.599454 6.006725, 118.539044 6.043821, 118.473574 6.070991, 118.404659 6.087566, 118.334 6.093137))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 610 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007724-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dftyqg
title: Occurrence Download

description: A dataset containing 2516 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lilium pumilum"
 ]
}

 The dataset includes 2516 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007725-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.344jpu
title: Occurrence Download

description: A dataset containing 217 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lilium pumilum"
 ]
}

 The dataset includes 217 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007727-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9360955
title: Depression_Detection_Bangla_text_Dataset3
DOI: 10.15468/dl.rjv6xu
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Greenland",
 "MediaType is Image",
 "TaxonKey is Salix arctica Pall."
 ]
}

 The dataset includes 58 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001585-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mcga8n
title: Occurrence Download

description: A dataset containing 896 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Farancia erytrogramma (Palissot De Beauvois, 1802)"
 ]
}

 The dataset includes 896 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001587-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5y7qep
title: Occurrence Download

description: A dataset containing 57701 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.11_1",
 "Year 1900-2025"
 ]
}

 The dataset includes 57701 records from 169 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001558-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.35097/ehrvgc6vyb7exqcs
title: Data from the revised version of "Creep behavior of a precipitation-strengthened A2-B2 refractory high entropy alloy"

description: Data from "Creep behavior of a precipitation-strengthened A2-B2 refractory high entropy alloy"

The data contains following file types:
*.ang are electron backscatter diffraction datasets in ASCII format
*.tif and *.jpg are raw images/micrographs from the manuscript in unedited form
*.dat are data from graphs in the manuscript provided in ASCII format with header information about the data

Temperatures are provided in °C. Stresses are given in MPa. Strains are given in 1 or % depending on context. Durations are provided in h. Strain/creep rates are provided in 1/s. Phase fractions are provided in vol%.
DOI: 10.15468/dl.4v736x
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Echinosorex gymnura (Raffles, 1822))",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016144-250525065834625/datasets/export for details.
DOI: 10.15468/dl.zg9pcb
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Echinosorex gymnura (Raffles, 1822))",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 37 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016143-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15488030
title: BirdDL
DOI: 10.5281/zenodo.15488031
title: BirdDL
DOI: 10.15468/dl.dbyv42
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lonicera pileata",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049535-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7z4ut9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Campocolinus schlegelii",
 "Country is Chinese Taipei",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049537-250811113504898/datasets/export for details.
DOI: 10.5281/zenodo.15546611
title: Dataset: Small, Medium and Large Triaxial Tests

description: Effects of Triaxial Sample Scaling on the Mechanical Behavior of Alluvial Gravels

In practical engineering, mechanical characterization of coarse gravels is usually performed on small-scale specimens, where the maximum particle size is limited to fit the material in standard testing devices. This implies altering the original particle size distribution, which is known to influence the stress-strain behavior. However, most research on grading effects has been done after comprehensive testing on sands, and the impact of small-scaling on gravelly soils is still poorly understood. This paper presents an experimental study on the shearing response of coarse soil at different specimen scales. The main objective is to assess the impact of small-scaling methods on the stress-strain behavior of coarse alluvial soils. Scalping grading and truncation techniques were used to prepare scaled specimens. Several tests were performed using triaxial cells with specimens of 100, 150 and 800 mm in diameter. The analyses indicate that volumetric dilatancy strongly decreases with specimen size, while the secant strain modulus and peak shear strength slightly increase in larger specimens. Differences are mainly related to particle size distributions and packing properties. The article discusses practical insights into the effects of small-scaling variations and their implications for characterizing gravelly materials.
DOI: 10.34740/kaggle/dsv/11999729
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.25326/ss88-4t24
title: ethyl nitrite + None - Photolysis - 2001-02-21

description: Publication of the dataset
DOI: 10.25326/y9ce-d740
title: Diesel Emissions+propene+NOx + OH - Other - 2009-10-19

description: Publication of the dataset
DOI: 10.25326/yq6g-q044
title: bacillus subtilis + None - Other

description: Publication of the dataset
DOI: 10.25326/nqxq-nx09
title: bacillus subtilis + None - Other

description: Publication of the dataset
DOI: 10.25326/7sn0-qn08
title: water+sodium chloride + None - Other - 2018-03-06

description: Publication of the dataset
DOI: 10.6084/m9.figshare.28120874
title: China's city level expressions of public views indices on climate risk and government responses on climate risk

description: A dataset on China's climate risk public opinion and government responses indices in city Level, 2011-2023 (excluding data from Hong Kong, Macao, and Taiwan).
DOI: 10.25326/6xhj-nj06
title: escherichia coli + None - Other

description: Publication of the dataset
DOI: 10.25326/jpye-6h87
title: escherichia coli + None - Other

description: Publication of the dataset
DOI: 10.25326/2apq-mg80
title: escherichia coli + None - Other

description: Publication of the dataset
DOI: 10.25326/f4z1-0c40
title: water+sodium chloride + None - Other - 2018-02-26

description: Publication of the dataset
DOI: 10.25326/jbj7-vy74
title: Diesel Emissions+propene+NOx + OH - Other - 2008-11-07

description: Publication of the dataset
DOI: 10.25326/qe34-0w93
title: Diesel Emissions+Propene+NOx + OH - Other - 2008-11-17

description: Publication of the dataset
DOI: 10.25326/bpfv-xw29
title: + None - Other - 2017-03-28

description: Publication of the dataset
DOI: 10.25326/56jj-qv55
title: Diesel Emissions+propene+NOx + OH - Other - 2009-08-17

description: Publication of the dataset
DOI: 10.25326/kk4d-0x27
title: methyl methacrylate + O3 -  - 2008-03-26

description: Publication of the dataset
DOI: 10.15468/dl.dfhwxu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((89.025012 23.940898, 88.94817999999999 23.935322, 88.87326 23.918729, 88.80211300000001 23.891535, 88.736504 23.854414, 88.678059 23.808288, 88.628218 23.754301, 88.588206 23.693793, 88.558999 23.628259, 88.541302 23.559321, 88.535534 23.488679, 88.54181699999999 23.418074, 88.559979 23.349244, 88.589555 23.283878, 88.629803 23.22358, 88.679726 23.169827, 88.73809 23.123934, 88.803461 23.087024, 88.87424 23.059996, 88.948696 23.043511, 89.025012 23.037971, 89.101328 23.043511, 89.17578399999999 23.059996, 89.24656299999999 23.087024, 89.31193399999999 23.123934, 89.37029800000001 23.169827, 89.420221 23.22358, 89.460469 23.283878, 89.49004499999999 23.349244, 89.508207 23.418074, 89.51449 23.488679, 89.50872200000001 23.559321, 89.49102499999999 23.628259, 89.46181799999999 23.693793, 89.421806 23.754301, 89.371965 23.808288, 89.31352 23.854414, 89.247911 23.891535, 89.17676400000001 23.918729, 89.101844 23.935322, 89.025012 23.940898))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007728-260120142942310/datasets/export for details.