cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3728671_d2.v1
title: Additional file 2: Table S2. of Tissue and time specific expression pattern of interferon regulated genes in the chicken

description: Common ISGs Extensive comparative database analysis to relate known mammalian ISGs to annotated chicken genes using entries in INTERFEROME, the ISG-database, KEGG, Reactome and several publications all annotated 13,353 genes on a customized laboratory internal Agilent 4x44K chicken Genome microarray. (XLSX 339 kb)
DOI: 10.6084/m9.figshare.c.3728674_d1
title: Additional file 10: Table S9. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Genes associated with Young-DR DMRs. (XLSX 387 kb)
DOI: 10.6084/m9.figshare.c.3728671_d2
title: Additional file 2: Table S2. of Tissue and time specific expression pattern of interferon regulated genes in the chicken

description: Common ISGs Extensive comparative database analysis to relate known mammalian ISGs to annotated chicken genes using entries in INTERFEROME, the ISG-database, KEGG, Reactome and several publications all annotated 13,353 genes on a customized laboratory internal Agilent 4x44K chicken Genome microarray. (XLSX 339 kb)
DOI: 10.6084/m9.figshare.c.3728674_d2
title: Additional file 11: Table S10. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Genes associated with Old-DR DMRs. (XLSX 249 kb)
DOI: 10.6084/m9.figshare.c.3728674_d2.v1
title: Additional file 11: Table S10. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Genes associated with Old-DR DMRs. (XLSX 249 kb)
DOI: 10.6084/m9.figshare.c.3728674_d5
title: Additional file 14: Table S13. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Genes with DR-induced whole gene body methylation differences. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.c.3728674_d7.v1
title: Additional file 2: Table S1. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Functional enrichment and clustering results for differentially expressed genes. (XLS 140 kb)
DOI: 10.6084/m9.figshare.c.3728674_d7
title: Additional file 2: Table S1. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Functional enrichment and clustering results for differentially expressed genes. (XLS 140 kb)
DOI: 10.15468/dl.4fjnp5
title: Occurrence Download

description: A dataset containing 1314 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cephalopholis cruentata (Lacepède, 1802)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1314 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038416-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3728674_d11.v1
title: Additional file 6: Table S5. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Functional enrichment for genes associated with age-related hypomethylation. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.c.3728674_d11
title: Additional file 6: Table S5. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Functional enrichment for genes associated with age-related hypomethylation. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.c.3728719_d1.v1
title: Additional file 1: Table S1. of 
                     Sporobolus stapfianus: Insights into desiccation tolerance in the resurrection grasses from linking transcriptomics to metabolomics

description: Non-targeted global metabolite profiles of dehydrating and rehydrating Sporobolus stapfianus leaf tissues. (XLSX 190 kb)
DOI: 10.6084/m9.figshare.c.3728719_d1
title: Additional file 1: Table S1. of 
                     Sporobolus stapfianus: Insights into desiccation tolerance in the resurrection grasses from linking transcriptomics to metabolomics

description: Non-targeted global metabolite profiles of dehydrating and rehydrating Sporobolus stapfianus leaf tissues. (XLSX 190 kb)
DOI: 10.6084/m9.figshare.c.3728674_d12.v1
title: Additional file 7: Table S6. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Functional enrichment for genes associated with DR-ameliorated, age-related hypermethylation. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.c.3728674_d12
title: Additional file 7: Table S6. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Functional enrichment for genes associated with DR-ameliorated, age-related hypermethylation. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.c.3728710_d3.v1
title: Additional file 3: of Diverse interventions that extend mouse lifespan suppress shared age-associated epigenetic changes at critical gene regulatory regions

description: Supplementary statistical data. The results and description of statistical methods used in each figure. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3728719_d2.v1
title: Additional file 2: Table S2. of 
                     Sporobolus stapfianus: Insights into desiccation tolerance in the resurrection grasses from linking transcriptomics to metabolomics

description: Gene Ontology (GO) enrichment of SDAT transcripts associated with the dehydration and rehydration of young leaves of Sporobolus stapfianus. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3728710_d3
title: Additional file 3: of Diverse interventions that extend mouse lifespan suppress shared age-associated epigenetic changes at critical gene regulatory regions

description: Supplementary statistical data. The results and description of statistical methods used in each figure. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3728719_d2
title: Additional file 2: Table S2. of 
                     Sporobolus stapfianus: Insights into desiccation tolerance in the resurrection grasses from linking transcriptomics to metabolomics

description: Gene Ontology (GO) enrichment of SDAT transcripts associated with the dehydration and rehydration of young leaves of Sporobolus stapfianus. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3728674_d13.v1
title: Additional file 8: Table S7. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Functional enrichment for genes associated with DR-ameliorated, age-related hypomethylation. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3728719_d5.v1
title: Additional file 5: Table S5a. of 
                     Sporobolus stapfianus: Insights into desiccation tolerance in the resurrection grasses from linking transcriptomics to metabolomics

description: A representative list of SDATs that have the greatest increase in abundance during dehydration of young leaves of Sporobolus stapfianus. Table S5b. A representative list of SDATs that have the greatest decrease in abundance during dehydration of young leaves of Sporobolus stapfianus. Table S5c. A representative list of SDATs that have the greatest increase in abundance during rehydration of young leaves of Sporobolus stapfianus. Table S5d. A representative list of SDATs that have the greatest decrease in abundance during rehydration of young leaves of Sporobolus stapfianus. (XLS 78 kb)
DOI: 10.6084/m9.figshare.c.3728719_d5
title: Additional file 5: Table S5a. of 
                     Sporobolus stapfianus: Insights into desiccation tolerance in the resurrection grasses from linking transcriptomics to metabolomics

description: A representative list of SDATs that have the greatest increase in abundance during dehydration of young leaves of Sporobolus stapfianus. Table S5b. A representative list of SDATs that have the greatest decrease in abundance during dehydration of young leaves of Sporobolus stapfianus. Table S5c. A representative list of SDATs that have the greatest increase in abundance during rehydration of young leaves of Sporobolus stapfianus. Table S5d. A representative list of SDATs that have the greatest decrease in abundance during rehydration of young leaves of Sporobolus stapfianus. (XLS 78 kb)
DOI: 10.6084/m9.figshare.c.3728710_d6
title: Additional file 6: of Diverse interventions that extend mouse lifespan suppress shared age-associated epigenetic changes at critical gene regulatory regions

description: Supplementary dataset 3. Accession codes and details of publically available histone datasets used in this analysis. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3728710_d7.v1
title: Additional file 7: of Diverse interventions that extend mouse lifespan suppress shared age-associated epigenetic changes at critical gene regulatory regions

description: Supplementary dataset 4. Accession codes and details of publically available transcription factor datasets used in this analysis. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3728710_d7
title: Additional file 7: of Diverse interventions that extend mouse lifespan suppress shared age-associated epigenetic changes at critical gene regulatory regions

description: Supplementary dataset 4. Accession codes and details of publically available transcription factor datasets used in this analysis. (XLSX 10 kb)
DOI: 10.15468/dl.p9qqhm
title: Occurrence Download

description: A dataset containing 110 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bombus picipes Richards, 1934"
 ]
}

 The dataset includes 110 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038417-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3729700_d2.v1
title: Additional file 2: Table S1. of Transcriptome analysis of microglia in a mouse model of Rett syndrome: differential expression of genes associated with microglia/macrophage activation and cellular stress

description: Total number of reads and mapped reads in 5- and 24-week Het females and WT controls. The mapping statistics were from tophat2 alignment report. QC of mapping results was done with RSeQC [82]. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3729700_d2
title: Additional file 2: Table S1. of Transcriptome analysis of microglia in a mouse model of Rett syndrome: differential expression of genes associated with microglia/macrophage activation and cellular stress

description: Total number of reads and mapped reads in 5- and 24-week Het females and WT controls. The mapping statistics were from tophat2 alignment report. QC of mapping results was done with RSeQC [82]. (XLSX 11Â kb)
DOI: 10.11578/rais_arar_12_13_2024/2481432
title: Established Regulatory Limits for Surface Water and Groundwater

description: The regulatory limits for surface water and groundwater contained in this database comprise chemical-specific preliminary remediation goals (PRGs) based on potential Applicable or Relevant and Appropriate Requirements (ARARs). These values should be used in conjunction with PRGs based on risk assessment to ensure that the PRGs for a site meet the residual risk requirements for protection of human health and the environment in the National Oil and Hazardous Substance Pollution Contingency Plan (NCP). In some cases, the values presented in this database may be To-Be-Considered (TBC) Guidance because these values are superseded by site-specific state requirements. ARARs are available for the Federal government, California, Georgia, Illinois, Kentucky, New Jersey, New Mexico, Nevada, New York, Ohio, South Carolina, Tennessee, Washington, and Wisconsin. The dataset provides maximum contaminant levels for drinking water and water quality criteria for fresh and marine environments based on acute and chronic exposures. Users can select ARAR sources, drinking water standards and water quality standards, individual chemicals, and retrieve results in tabular or spreadsheet formats for analysis. ARARs are derived from authoritative sources, including federal and state government agencies. The dataset supports environmental risk assessments, regulatory decision-making, and environmental planning, with tools for benchmarking against promulgated standards. This structured approach ensures a robust evaluation of environmental risks tailored to regulatory needs.
DOI: 10.6084/m9.figshare.c.3729700_d3.v1
title: Additional file 3: Table S2. of Transcriptome analysis of microglia in a mouse model of Rett syndrome: differential expression of genes associated with microglia/macrophage activation and cellular stress

description: Entire gene list for Het vs WT in 5-week (sheet 1) and 24-week microglia (sheet 2). The genes are listing in descending order according to the adjusted p value (padj). Sheet 3 shows the number of DEGs in the 5-week samples after repeating the analysis five times by randomly sampling from the 5-week samples the numbers of RNA-seq reads matching to the read depth of the week 24 samples. (XLSX 7264Â kb)
DOI: 10.6084/m9.figshare.c.3729700_d3
title: Additional file 3: Table S2. of Transcriptome analysis of microglia in a mouse model of Rett syndrome: differential expression of genes associated with microglia/macrophage activation and cellular stress

description: Entire gene list for Het vs WT in 5-week (sheet 1) and 24-week microglia (sheet 2). The genes are listing in descending order according to the adjusted p value (padj). Sheet 3 shows the number of DEGs in the 5-week samples after repeating the analysis five times by randomly sampling from the 5-week samples the numbers of RNA-seq reads matching to the read depth of the week 24 samples. (XLSX 7264Â kb)
DOI: 10.15468/dl.xemu87
title: Occurrence Download

description: A dataset containing 241 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cephaloscyllium ventriosum (Garman, 1880)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 241 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038419-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3729727_d2.v1
title: Additional file 2: of Integrating ethnobiological knowledge into biodiversity conservation in the Eastern Himalayas

description: Reviewed species with ethnobiological records, including rank values, distributional data, ethnobiological uses. (XLSX 126Â kb)
DOI: 10.15468/dl.gjr2vp
title: Occurrence Download

description: A dataset containing 4011 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "GadmGid is CIV.1_1",
 "TaxonKey is Passeriformes",
 "Year 2002-2024"
 ]
}

 The dataset includes 4011 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038418-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25584/2481466
title: Simulated x-ray absorption spectra calculated with the FEFF code for various models of Cu incorporated into the iron oxide mineral hematite. The structures are drawn from publically available ab initio molecular dynamics simulations.

description: FEFF simulations of Cu doped hematite.
DOI: 10.6084/m9.figshare.c.3729790_d2.v1
title: MOESM2 of Co-production of hydrogen and ethanol from glucose in Escherichia coli by activation of pentose-phosphate pathway through deletion of phosphoglucose isomerase (pgi) and overexpression of glucose-6-phosphate dehydrogenase (zwf) and 6-phosphogluconate dehydrogenase (gnd)

description: Additional file 2: Appendix A. Raw data of RT-PCR analysis.
DOI: 10.6084/m9.figshare.c.3729790_d2
title: MOESM2 of Co-production of hydrogen and ethanol from glucose in Escherichia coli by activation of pentose-phosphate pathway through deletion of phosphoglucose isomerase (pgi) and overexpression of glucose-6-phosphate dehydrogenase (zwf) and 6-phosphogluconate dehydrogenase (gnd)

description: Additional file 2: Appendix A. Raw data of RT-PCR analysis.
DOI: 10.6084/m9.figshare.c.3729820_d2.v1
title: Additional file 2: of Evolutionary origin and function of NOX4-art, an arthropod specific NADPH oxidase

description: Table with a list of the species where NOX4-art genes could be found on NCBI’s TSA database. Their TSA identification number and amino acid length. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3729832_d1.v1
title: Additional file 10: of Genomic history of the origin and domestication of common bean unveils its closest sister species

description: Table S19. GO terms associated to domestication PCGs specific to Mesoamerican varieties. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.c.3729820_d2
title: Additional file 2: of Evolutionary origin and function of NOX4-art, an arthropod specific NADPH oxidase

description: Table with a list of the species where NOX4-art genes could be found on NCBI’s TSA database. Their TSA identification number and amino acid length. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3729829_d1.v1
title: Additional file 1: of Patterns of cross-contamination in a multispecies population genomic project: detection, quantification, impact, and solutions

description: Table S1. List of species and laboratory metadata. (XLS 55 kb)
DOI: 10.6084/m9.figshare.c.3729826_d3.v1
title: Additional file 3: Table S3. of Changes in the Sclerotinia sclerotiorum transcriptome during infection of Brassica napus

description: List of up-regulated genes with BLAST2GO annotation. Description of all genes that were up-regulated in Sclerotinia sclerotiorum at various times during infection of Brassica napus. (XLSX 413 kb)
DOI: 10.6084/m9.figshare.c.3729832_d1
title: Additional file 10: of Genomic history of the origin and domestication of common bean unveils its closest sister species

description: Table S19. GO terms associated to domestication PCGs specific to Mesoamerican varieties. (XLSX 56 kb)
DOI: 10.15468/dl.qa8cum
title: Occurrence Download

description: A dataset containing 1220 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cepola macrophthalma (Linnaeus, 1758)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1220 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038420-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3729829_d1
title: Additional file 1: of Patterns of cross-contamination in a multispecies population genomic project: detection, quantification, impact, and solutions

description: Table S1. List of species and laboratory metadata. (XLS 55 kb)
DOI: 10.6084/m9.figshare.c.3729826_d3
title: Additional file 3: Table S3. of Changes in the Sclerotinia sclerotiorum transcriptome during infection of Brassica napus

description: List of up-regulated genes with BLAST2GO annotation. Description of all genes that were up-regulated in Sclerotinia sclerotiorum at various times during infection of Brassica napus. (XLSX 413 kb)
DOI: 10.6084/m9.figshare.c.3729829_d2.v1
title: Additional file 2: of Patterns of cross-contamination in a multispecies population genomic project: detection, quantification, impact, and solutions

description: Table S2. List of samples, shipment dates, and prevalence of expected and unexpected cox1 reads. (XLS 101 kb)
DOI: 10.6084/m9.figshare.c.3729820_d3.v1
title: Additional file 3: of Evolutionary origin and function of NOX4-art, an arthropod specific NADPH oxidase

description: Table with the list of species where p22-phox was found, their gene identification, amino acid length and composition of the polybasic and proline rich region. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3729835_d1.v1
title: Additional file 1: Table S1. of Migration of mitochondrial DNA in the nuclear genome of colorectal adenocarcinoma

description: NUMT abundance in all the colorectal tumor samples (nâ  =â  57) used in this study. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3729820_d3
title: Additional file 3: of Evolutionary origin and function of NOX4-art, an arthropod specific NADPH oxidase

description: Table with the list of species where p22-phox was found, their gene identification, amino acid length and composition of the polybasic and proline rich region. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3729829_d2
title: Additional file 2: of Patterns of cross-contamination in a multispecies population genomic project: detection, quantification, impact, and solutions

description: Table S2. List of samples, shipment dates, and prevalence of expected and unexpected cox1 reads. (XLS 101 kb)
DOI: 10.6084/m9.figshare.c.3729835_d1
title: Additional file 1: Table S1. of Migration of mitochondrial DNA in the nuclear genome of colorectal adenocarcinoma

description: NUMT abundance in all the colorectal tumor samples (nâ  =â  57) used in this study. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3729829_d6.v1
title: Additional file 6: Table S3. of Patterns of cross-contamination in a multispecies population genomic project: detection, quantification, impact, and solutions

description: Effect of laboratory and sequencing center variables on the probability of contamination, with the minimal cox1 divergence between contaminant and contaminated species being set to 10% instead of 5%. (XLS 6 kb)
DOI: 10.6084/m9.figshare.c.3729832_d6.v1
title: Additional file 5: of Genomic history of the origin and domestication of common bean unveils its closest sister species

description: Table S14. Domestication gene candidates specific to Mesoamerican varieties. (XLSX 100 kb)
DOI: 10.6084/m9.figshare.c.3729829_d6
title: Additional file 6: Table S3. of Patterns of cross-contamination in a multispecies population genomic project: detection, quantification, impact, and solutions

description: Effect of laboratory and sequencing center variables on the probability of contamination, with the minimal cox1 divergence between contaminant and contaminated species being set to 10% instead of 5%. (XLS 6 kb)
DOI: 10.6084/m9.figshare.c.3729832_d6
title: Additional file 5: of Genomic history of the origin and domestication of common bean unveils its closest sister species

description: Table S14. Domestication gene candidates specific to Mesoamerican varieties. (XLSX 100 kb)
DOI: 10.6084/m9.figshare.c.3729832_d7.v1
title: Additional file 6: of Genomic history of the origin and domestication of common bean unveils its closest sister species

description: Table S15. PCGs and functional categories introgressing between wild subpopulations. (XLSX 109 kb)
DOI: 10.6084/m9.figshare.c.3729832_d7
title: Additional file 6: of Genomic history of the origin and domestication of common bean unveils its closest sister species

description: Table S15. PCGs and functional categories introgressing between wild subpopulations. (XLSX 109 kb)
DOI: 10.6084/m9.figshare.c.3729820_d7.v1
title: Additional file 7: of Evolutionary origin and function of NOX4-art, an arthropod specific NADPH oxidase

description: FASTA file with the peptides used in the phylogenetic analysis and their NCBI accession numbers. (TXT 287 kb)