cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/ym6hb-bqa68
title: MP PrkC 27.5KX

description: Mycoplasma pneumonia PrkC mutant
description: <strong>Tilt Series Date:</strong> 2010-01-02</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Mycoplasma pneumoniae</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> data collected by Jian; processed by Jian</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
  jsa2010-01-02-4_slicer9819.jpg: Mycoplasma pneumonia .  nested vesicle jsa2010-01-02-4_slicer13243.jpg: Attachment Organelle jsa2010-01-02-4_slicer13244.jpg: Attachment Organelle jsa2010-01-02-4_slicer13245.jpg: Attachment Organelle
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-01-02-4/rawdata/</p>10jan02b_B116a_004.mrc,  Tilt Series (Pixel Size 0.774 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-01-02-4/rawdata/10jan02b_B116a_004.mrc"
        > <i class="download icon"></i> Download </a></p>

        10jan02b_B116a_004_full.rec,  Reconstruction (Pixel Size 1.548 nm), 419.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-01-02-4/3dimage_16879/10jan02b_B116a_004_full.rec"
        > <i class="download icon"></i> Download </a></p>

        10jan02b_B116a_004_1k.rec,  Reconstruction (Pixel Size 0.0 nm), 213.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-01-02-4/3dimage_55451/10jan02b_B116a_004_1k.rec"
        > <i class="download icon"></i> Download </a></p>

        10jan02b_B116a_004_SIRT.rec,  Reconstruction (Pixel Size 0.0 nm), 524.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-01-02-4/3dimage_55452/10jan02b_B116a_004_SIRT.rec"
        > <i class="download icon"></i> Download </a></p>

        jsa2010-01-02-4_slicer16876.png,  691.5 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/Caps/jsa2010-01-02-4_slicer16876.png"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/gr9k3-7s895
title: CB15N single colony exponential

description: Raw data files of CB15N single colony exponential
description: <strong>Tilt Series Date:</strong> 2010-01-09</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -12.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR and Peach</p>
<strong>Collaborators and Roles:</strong> Experiments done by ZL.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Single colony. Exponential phase in PYE.</p>
<strong>Sample Preparation:</strong> Quantifoil R2/2 or R2/1, 10 nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2010-01-09-15/rawdata/</p>10jan09a_CB15N_015.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2010-01-09-15/rawdata/10jan09a_CB15N_015.mrc"
        > <i class="download icon"></i> Download </a></p>

        10jan09a_CB15N_015_part.rec.mrc,  Reconstruction (Pixel Size 2.384 nm), 524.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        10jan09a_CB15N_015_deno15.rec.mrc,  Reconstruction (Pixel Size 2.384 nm), 2.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        10jan09a_CB15N_015_deno25.rec.mrc,  Reconstruction (Pixel Size 2.384 nm), 2.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2010-01-09-15/3dimage_9559/10jan09a_CB15N_015_deno25.rec.mrc"
        > <i class="download icon"></i> Download </a></p>

        10jan09a_CB15N_015_deno50.rec.mrc,  Reconstruction (Pixel Size 2.384 nm), 2.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/gbak3-b0s82
title: MEFs Chan Lab WT mitochondria

description: MEFs from Chan lab with normal mitochondria.
description: <strong>Tilt Series Date:</strong> 2011-12-14</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Murine embryonic fibroblast (MEFs)</p>
<strong>Strain:</strong> Primary cells</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> David Chan provided cells- contact Oliver Loson</p>
<strong>Purification / Growth Conditions / Treatment:</strong> control cells for fission mutant</p>
<strong>Sample Preparation:</strong> manual blot</p>
  11dec14_MEFsB_0006_full.jpg: file associated to 3D Image #54411
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-12-14-2/rawdata/</p>11dec14_MEFsB_0006.st,  Tilt Series (Pixel Size 0.5 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-12-14-2/rawdata/11dec14_MEFsB_0006.st"
        > <i class="download icon"></i> Download </a></p>

        11dec14_MEFsB_0006_full.rec,  Reconstruction (Pixel Size 2.0 nm), 650.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-12-14-2/3dimage_54411/11dec14_MEFsB_0006_full.rec"
        > <i class="download icon"></i> Download </a></p>

        11dec14_MEFsB_0006_medflt.rec,  Reconstruction (Pixel Size 2.0 nm), 650.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-12-14-2/3dimage_54412/11dec14_MEFsB_0006_medflt.rec"
        > <i class="download icon"></i> Download </a></p>

        11dec14_MEFsB_0006_full.tiff,  file associated to 3D Image #54411, 1.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-12-14-2/file_13143/11dec14_MEFsB_0006_full.tiff"
        > <i class="download icon"></i> Download </a></p>

        cwl2011-12-14-2_slicer19390.png, , 957.4 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/Caps/cwl2011-12-14-2_slicer19390.png"
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DOI: 10.22002/2aan5-xd358
title: NHP2L1 siRNA virus particles

description: HIV particles from producer cells treated with NHP2L1 siRNA
description: <strong>Tilt Series Date:</strong> 2012-09-17</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Unspecified</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Gaelle Mercenne (Sundquist lab) generated virus. Viral particles were shipped to Caltech to be frozen and imaged by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Virus made in presence of NHP2L1 siRNA</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-09-17-7/3dimage_69455/</p>12sep17_c141_2_AT1BT1_0007_BIN_full.rec,  Reconstruction (Pixel Size 2.0 nm), 450.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-09-17-7/3dimage_69455/12sep17_c141_2_AT1BT1_0007_BIN_full.rec"
        > <i class="download icon"></i> Download </a></p>

        12sep17_c141_2_AT1BT1_0007.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-09-17-7/rawdata/12sep17_c141_2_AT1BT1_0007.mrc"
        > <i class="download icon"></i> Download </a></p>

        c141_2_0007_particle_1.tiff,  file associated to 3D Image #69455, 735.7 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-09-17-7/file_16168/c141_2_0007_particle_1.tiff"
        > <i class="download icon"></i> Download </a></p>

        c141_2_0007_particle_1_2.tiff,  file associated to 3D Image #69455, 768.9 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-09-17-7/file_16167/c141_2_0007_particle_1_2.tiff"
        > <i class="download icon"></i> Download </a></p>

        c141_2_0007_particle_1_2_b.tiff,  file associated to 3D Image #69455, 750.2 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-09-17-7/file_16166/c141_2_0007_particle_1_2_b.tiff"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/w9fy5-e1691
title: Agrobacterium C58 25C plate liq

description: C58 wild type
description: <strong>Tilt Series Date:</strong> 2014-05-30</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> grown at 25 on plates for 2 days then recovered in liquid for 5 h</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
  etl2014-05-30-14_slicer6852.jpg: Unknown filaments
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-05-30-14/rawdata/</p>c58_25_pl_liq0007.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-05-30-14/rawdata/c58_25_pl_liq0007.mrc"
        > <i class="download icon"></i> Download </a></p>

        c58_25_pl_liq0007.rec,  Reconstruction (Pixel Size 0.0 nm), 349.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-05-30-14/3dimage_49496/c58_25_pl_liq0007.rec"
        > <i class="download icon"></i> Download </a></p>

        slicer000.tif,  2.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-05-30-14/file_11748/slicer000.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer001.tif,  2.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-05-30-14/file_11749/slicer001.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer002.tif,  2.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-05-30-14/file_11750/slicer002.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/61be4-pb942
title: Agro C58 22C plate 16h

description: Raw data files of Agro C58 22C plate 16h
description: <strong>Tilt Series Date:</strong> 2014-11-10</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown at 22C and induced for T pili on a 2% agarose pad for 16 hours</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-11-10-58/rawdata/</p>c58_22_pl_16h90011.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-11-10-58/rawdata/c58_22_pl_16h90011.mrc"
        > <i class="download icon"></i> Download </a></p>

        c58_22_pl_16h90011_part121_2.rec,  Reconstruction (Pixel Size 0.0 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-11-10-58/3dimage_49579/c58_22_pl_16h90011_part121_2.rec"
        > <i class="download icon"></i> Download </a></p>

        slicer000.tif,  2.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-11-10-58/file_12050/slicer000.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer001.tif,  2.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-11-10-58/file_12051/slicer001.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer002.tif,  2.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-11-10-58/file_12052/slicer002.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/nr902-wa453
title: Agro C58 22C liq_pl

description: Agrobacterium tumefaciens C58
description: <strong>Tilt Series Date:</strong> 2014-07-13</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski wild type cells</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown at 22C on plates then recovered in liquid for 4 hours</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-13-11/rawdata/</p>agro_c58_25_liq0001.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-13-11/rawdata/agro_c58_25_liq0001.mrc"
        > <i class="download icon"></i> Download </a></p>

        agro_c58_25_liq0001_full.rec,  Reconstruction (Pixel Size 0.0 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-13-11/3dimage_49363/agro_c58_25_liq0001_full.rec"
        > <i class="download icon"></i> Download </a></p>

        slicer000.tif,  2.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-13-11/file_11479/slicer000.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer001.tif,  2.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-13-11/file_11480/slicer001.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer002.tif,  2.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-13-11/file_11481/slicer002.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.pgzfee
title: Occurrence Download

description: A dataset containing 30793 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Scelorchilus rubecula",
 "Year 1970-2025"
 ]
}

 The dataset includes 30793 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032961-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/6pzf2-rx491
title: Agro C58

description: Wild type Agrobacterium C58
description: <strong>Tilt Series Date:</strong> 2013-09-13</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -8.0 μm,  magnification: 34x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown on agar plates for 2 days on Au grids</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-09-13-7/rawdata/</p>C58_au_34k0007.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-09-13-7/rawdata/C58_au_34k0007.mrc"
        > <i class="download icon"></i> Download </a></p>

        C58_au_34k0007_part121_1.rec,  Reconstruction (Pixel Size 1.28 nm), 801.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-09-13-7/3dimage_30915/C58_au_34k0007_part121_1.rec"
        > <i class="download icon"></i> Download </a></p>

        C58_au_34k0007_part121_1.rec,  Reconstruction (Pixel Size 0.0 nm), 801.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-09-13-7/3dimage_49149/C58_au_34k0007_part121_1.rec"
        > <i class="download icon"></i> Download </a></p>

        et2013-09-13-7-holdfast.tif,  4.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-09-13-7/file_10887/et2013-09-13-7-holdfast.tif"
        > <i class="download icon"></i> Download </a></p>

        et2013-09-13-7-pili.tif,  4.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-09-13-7/file_10888/et2013-09-13-7-pili.tif"
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DOI: 10.22002/sacat-ffd36
title: Agrobacterium tumefaciens

description: Agro VG3101
description: <strong>Tilt Series Date:</strong> 2013-10-31</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Elliot Meyerwitz</p>
<strong>Purification / Growth Conditions / Treatment:</strong> liquid LB+antibiotics</p>
<strong>Sample Preparation:</strong> Vitrobot blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-31-5/rawdata/</p>agro_VG31010001.mrc,  Tilt Series (Pixel Size 0.4 nm), 3.4 GB  
        
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        agro_VG31010001_part121_4.rec,  Reconstruction (Pixel Size 0.0 nm), 801.8 MB  
        
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        VG31010001.rec,  Reconstruction (Pixel Size 0.0 nm), 27.8 MB  
        
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        VG31010001_full.rec,  Reconstruction (Pixel Size 0.0 nm), 1.3 GB  
        
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        et2013-10-31-5.tif,  1.8 MB  
        
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