cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/svt57k426w.1
title: raw image data for "Resilient anatomy and local plasticity of naïve and stress hematopoiesis "_Figure ED 1-10_part_12

description: Extended Data Figure 8 image
DOI: 10.17632/h2tspppswp.1
title: Dataset Ranking of universities

description: Database with information on Latin American universities according to the Webometrics ranking.
DOI: 10.6084/m9.figshare.25006598
title: Isolated Movement Experiment (Raw Data)

description: “Isolated Movement Experiment” analyzed the total distance traveled by snails within an isolated environment (without stimuli).
DOI: 10.6084/m9.figshare.25006598.v1
title: Isolated Movement Experiment (Raw Data)

description: “Isolated Movement Experiment” analyzed the total distance traveled by snails within an isolated environment (without stimuli).
DOI: 10.6073/pasta/b5dcfdf549425b493324ea2c227002d8
title: Phenologies of the Tabonuco Forest trees and shrubs

description: These data are being used to, among other things, (1) determine the seasonality of flowering and fruiting in Tabonuco forest and test hypotheses concerning the causation of seasonality (or lack thereof), (2) test the effect of annual variation in rainfall and other climatic variables on seed and fruit production of individual species, and (3) compare the relative dispersal of species on the Luquillo Forest Dynamics Plot by applying information on the spatial distribution of canopy trees to the data on seed and fruit fall. These data also serve as background information on the flowering and fruiting of individual species.
 
 Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.
DOI: 10.17632/ytb434c7zx.1
title: Multistage operating room sequencing problem

description: This data is about a specific problem in surgery scheduling that focuses on dividing surgeries into different phases to improve resource scheduling. The problem is based on real-life situations in a private hospital in Belgium and involves sequencing surgeries and determining their start times, taking into account the availability of various resources such as rooms, surgeons, and anesthesiologists. The main goal is to efficiently allocate and use resources to minimize the number of overtime hours they are engaged. The approach includes dividing the peri-operative stage into different phases, each requiring a specific mix of resources, which differs from traditional approaches that assign resources for the entire surgery duration. This flexibility helps create a more efficient schedule by reducing resource idle time and associated costs.

The dataset consists of two parts. The first part, named "General", is synthetic data meticulously generated to simulate real-life environments, validating the stability and efficiency of the proposed algorithm. The second part, named "Reallife" involves a case study conducted at the private hospital Sint-Elisabeth Zottegem (Belgium) to assess the value of dividing surgeries into multiple resource phases. To gather the necessary instance information, we conducted interviews with key personnel responsible for composing OR schedules and examined the OR logbook for July 2022. This resulted in the collection of data for 20 instances, with each instance representing the activities of a single day and the total number of patients ranging from 38 to 88.

This dataset is designed to consider resource assignment to, dismissal from, and return to surgical cases at different stages (pre-surgery, peri-surgery, post-surgery, recovery, etc.). The findings of this research are detailed in the paper titled "A Two-Layer Heuristic for Patient Sequencing in the Operating Room Theatre Considering Multiple Resource Phases," currently under review. Further information, including the DOI, will be assigned upon acceptance.

It's worth noting that the paper under review explores a problem similar to others, such as the work by Latorre-Núñez et al. (2016) on scheduling operating rooms with consideration of all resources, post-anesthesia beds, and emergency surgeries (Computers & Industrial Engineering, 97, 248-257).

Some notes:
1- Each folder contains a subfolder called "Instance" which includes all instances in HTML format. The information is organized in an object-oriented manner using related tag objects.
2- Other subfolders include the result and solution for each instance in HTML format. For example, the subfolder "MIP" includes all solutions reported by CPLEX from the MIP model under a 3600-second time limit. For more information about the model and PC, please refer to the linked paper.
3- All files have a "description" tag that provides a brief summary of their contents.
DOI: 10.6084/m9.figshare.23668784.v1
title: Housekeeping gene expression variability in differentiating and non-differentiating 3T3-L1 cells

description: Normalization is a crucial step in gene expression analysis to avoid misinterpretation. Reverse transcription-quantitative polymerase chain reaction was used to measure the expression of 10 candidate housekeeping genes in non-differentiated (ND) and differentiated (DI) 3T3-L1 cells on days 5 and 10. We used geNorm, NormFinder, BestKeeper, RefFinder, and the ∆Ct method to evaluate expression stability. The findings revealed that (1) the expression levels of the reference genes changed over time, even in non-differentiating cells, and (2) peptidylprolyl isomerase A (<i>Ppia</i>) and TATA box-binding protein (<i>Tbp</i>) were stable reference genes for 10 days in both undifferentiated and differentiated 3T3-L1 cells. Notably, the expression of known reference genes in non-differentiating cells was altered throughout the experiment.
DOI: 10.6084/m9.figshare.23668784
title: Housekeeping gene expression variability in differentiating and non-differentiating 3T3-L1 cells

description: Normalization is a crucial step in gene expression analysis to avoid misinterpretation. Reverse transcription-quantitative polymerase chain reaction was used to measure the expression of 10 candidate housekeeping genes in non-differentiated (ND) and differentiated (DI) 3T3-L1 cells on days 5 and 10. We used geNorm, NormFinder, BestKeeper, RefFinder, and the ∆Ct method to evaluate expression stability. The findings revealed that (1) the expression levels of the reference genes changed over time, even in non-differentiating cells, and (2) peptidylprolyl isomerase A (<i>Ppia</i>) and TATA box-binding protein (<i>Tbp</i>) were stable reference genes for 10 days in both undifferentiated and differentiated 3T3-L1 cells. Notably, the expression of known reference genes in non-differentiating cells was altered throughout the experiment.
DOI: 10.6084/m9.figshare.23911999.v1
title: <i>CABLES1</i> expression is reduced in human subcutaneous adipose tissue in obesity and type 2 diabetes but may not directly impact adipocyte glucose and lipid metabolism

description: Cdk5 and Abl enzyme substrate 1 (CABLES1) is a cell cycle regulator that has previously been identified as a candidate gene for obesity-related phenotypes, but little is known about its role in adipose tissue metabolism. In this study, we explore the role of CABLES1 in obesity and type 2 diabetes (T2D) in human subcutaneous adipose tissue (SAT). We performed gene expression analysis of SAT obtained from subjects with and without T2D, and from a second validation cohort consisting of subjects without T2D. We used CRISPR/Cas9 genome editing to perform CABLES1 loss-of-function studies in human primary preadipocytes and assessed them functionally after differentiation. <i>CABLES1</i> gene expression in SAT was decreased in T2D by almost 25%, and inversely associated with insulin resistance markers and hyperglycaemia. mRNA levels were reduced with increasing BMI and negatively correlated with obesity markers. We found that adipocytes are likely the main CABLES1-expressing cell type in SAT, but CABLES1 depletion in adipocytes caused no phenotypical changes in regards to differentiation, glucose uptake, or expression of key genes of adipocyte function. These findings suggest that <i>CABLES1</i> gene expression in SAT might be altered in obesity and T2D as a consequence of metabolic dysregulation rather than being a causal factor.
DOI: 10.6084/m9.figshare.23911999
title: <i>CABLES1</i> expression is reduced in human subcutaneous adipose tissue in obesity and type 2 diabetes but may not directly impact adipocyte glucose and lipid metabolism

description: Cdk5 and Abl enzyme substrate 1 (CABLES1) is a cell cycle regulator that has previously been identified as a candidate gene for obesity-related phenotypes, but little is known about its role in adipose tissue metabolism. In this study, we explore the role of CABLES1 in obesity and type 2 diabetes (T2D) in human subcutaneous adipose tissue (SAT). We performed gene expression analysis of SAT obtained from subjects with and without T2D, and from a second validation cohort consisting of subjects without T2D. We used CRISPR/Cas9 genome editing to perform CABLES1 loss-of-function studies in human primary preadipocytes and assessed them functionally after differentiation. <i>CABLES1</i> gene expression in SAT was decreased in T2D by almost 25%, and inversely associated with insulin resistance markers and hyperglycaemia. mRNA levels were reduced with increasing BMI and negatively correlated with obesity markers. We found that adipocytes are likely the main CABLES1-expressing cell type in SAT, but CABLES1 depletion in adipocytes caused no phenotypical changes in regards to differentiation, glucose uptake, or expression of key genes of adipocyte function. These findings suggest that <i>CABLES1</i> gene expression in SAT might be altered in obesity and T2D as a consequence of metabolic dysregulation rather than being a causal factor.
DOI: 10.6084/m9.figshare.24063701
title: Perilipin-1 immunostaining improves semi-automated digital quantitation of bone marrow adipocytes in histological bone sections

description: Bone marrow adipocytes (BMAds) are not just passive fillers inside the bone marrow compartment but respond to various metabolic changes. Assessment of those responses requires evaluation of the number of BMAds and their morphology for which laborious and error-prone manual histological analysis remains the most widely used method. Here, we report an alternative image analysis strategy to semi-automatically quantitate and analyse the morphology of BMAds in histological bone sections. Decalcified, formalin-fixed paraffin-embedded histological sections of long bones of Sprague-Dawley rats were stained with either haematoxylin and eosin (HE) or by immunofluorescent staining for adipocyte-specific protein perilipin-1 (PLIN1). ImageJ-based commands were constructed to detect BMAds sized 200 µm<sup>2</sup> or larger from standardized 1 mm<sup>2</sup> analysis regions by either classifying the background colour (HE) or the positive and circular PLIN1 fluorescent signal. Semi-automated quantitation strongly correlated with independent, single-blinded manual counts regardless of the staining method (HE-based: <i>r</i>=0.85, <i>p</i>&lt;0.001; PLIN1 based: <i>r</i>=0.95, <i>p</i>&lt;0.001). The detection error was higher in HE-stained sections than in PLIN1-stained sections (14% versus 5%, respectively; <i>p</i>&lt;0.001), which was due to false-positive detections of unstained adipocyte-like circular structures. In our dataset, the total adiposity area from standardised ROIs in PLIN-1-stained sections correlated with that in whole-bone sections (<i>r</i>=0.60, <i>p</i>=0.02).
DOI: 10.17632/v2t4gny7wn.1
title: Analisis Yuridis Sistem Pemasyarakatan Melalui Pendekatan Indikator Nilai Pancasila

description: Criminal sanctions, which were originally intended as compensation for actions and the consequences resulting from a criminal act, are often used as a means of retaliation which was not previously taken into account and could have a negative impact. The true goals of the correctional system often do not match das sein (hopes) with the reality that occurs (das sollen), which causes secondary victimization of former prisoners in the form of negative stereotypes (stigmatization) and prisonization. This paper
analyzes the correctional system in Indonesia, based on Law Number 12 of 1995 concerning Corrections and its amendments, namely Law Number 22 of 2022 concerning Corrections through the Pancasila Value Indicator approach using a normative juridical approach. The results of the analysis carried out on these two legal products are that the penitentiary system in Indonesia has not shown a pattern of training for prisoners and inmates that is in accordance with the Pancasila value indicators.
DOI: 10.17882/98294
title: Temperature and salinity indices at Northwest Atlantic Fisheries Organization regulatory area (1988-2022)

description: In 1988, the Spanish Institute of Oceanography (CN-IEO/CSIC) initiated a series of oceanographic campaigns in the NAFO Regulatory Area, incorporating CTD measurements to characterize the water column. Temporal indices have been calculated using 5832 CTD profiles from May to the end of August, from 1988 to 2022.
Analysis of the bathymetry and thermohaline characteristics of the area reveal notable differences in salinity and temperature. Based on these findings, the Newfoundland banks can be divided into three zones: northeast, northwest, and south. These variations become more evident in surface salinity. In the northeast region (46-49°N, 43-47°W), salinity values are significantly higher than in the northwest (46-49°N, 47-49°W), while the southern area (42-46°N, 49-53°W) displays less pronounced extremes than the northern ones. These variations were proved by calculating Pearson correlation coefficients, which have low values showing a decoupling of the regions.
To generate the indices, two depths were considered: at 10 ± 5 m, to represent surface conditions, and at 250 ± 5 m, as average depth of the zone. 
For each parameter (temperature and salinity) the annual mean was calculated, resulting in twelve series which can be considered as reference for each zone and depth. These series have been detrended, producing anomaly indices that are suitable to use in climatic variability studies.
DOI: 10.6084/m9.figshare.24063701.v1
title: Perilipin-1 immunostaining improves semi-automated digital quantitation of bone marrow adipocytes in histological bone sections

description: Bone marrow adipocytes (BMAds) are not just passive fillers inside the bone marrow compartment but respond to various metabolic changes. Assessment of those responses requires evaluation of the number of BMAds and their morphology for which laborious and error-prone manual histological analysis remains the most widely used method. Here, we report an alternative image analysis strategy to semi-automatically quantitate and analyse the morphology of BMAds in histological bone sections. Decalcified, formalin-fixed paraffin-embedded histological sections of long bones of Sprague-Dawley rats were stained with either haematoxylin and eosin (HE) or by immunofluorescent staining for adipocyte-specific protein perilipin-1 (PLIN1). ImageJ-based commands were constructed to detect BMAds sized 200 µm<sup>2</sup> or larger from standardized 1 mm<sup>2</sup> analysis regions by either classifying the background colour (HE) or the positive and circular PLIN1 fluorescent signal. Semi-automated quantitation strongly correlated with independent, single-blinded manual counts regardless of the staining method (HE-based: <i>r</i>=0.85, <i>p</i>&lt;0.001; PLIN1 based: <i>r</i>=0.95, <i>p</i>&lt;0.001). The detection error was higher in HE-stained sections than in PLIN1-stained sections (14% versus 5%, respectively; <i>p</i>&lt;0.001), which was due to false-positive detections of unstained adipocyte-like circular structures. In our dataset, the total adiposity area from standardised ROIs in PLIN-1-stained sections correlated with that in whole-bone sections (<i>r</i>=0.60, <i>p</i>=0.02).
DOI: 10.6084/m9.figshare.25006610
title: Elapsed Field Movement Experiment

description: The “Elapsed Movement Field Experiment” explored whether differences in movement in the lab resulted in altered dispersal in a field setting
DOI: 10.6084/m9.figshare.25006610.v1
title: Elapsed Field Movement Experiment

description: The “Elapsed Movement Field Experiment” explored whether differences in movement in the lab resulted in altered dispersal in a field setting
DOI: 10.17632/zr85nd3bdg.1
title: raw image data for "Resilient anatomy and local plasticity of naïve and stress hematopoiesis "_Figure ED 1-10_part_10

description: Extended Data Figure 8 image
DOI: 10.5281/zenodo.10519263
title: Media literacy for the social inclusion of young people - perceptions of teachers and school managers

description: Database with  information on the interviewee's experience, their organization's activities, and their perspectives on digital literacy and internet safety initiatives for young people, aged 12 to 18 yo, inside and outside schools.
DOI: 10.5281/zenodo.10519264
title: Media literacy for the social inclusion of young people - perceptions of teachers and school managers

description: Database with  information on the interviewee's experience, their organization's activities, and their perspectives on digital literacy and internet safety initiatives for young people, aged 12 to 18 yo, inside and outside schools.
DOI: 10.5281/zenodo.10392364
title: A diamond anvil microassembly for Joule heating and electrical measurements up to 150 GPa and 4000 K

description: Raw electrical data, metadata, and processed data (e.g. temperature and emissivity fits) for Fig. 12 of the submitted manuscript. The python script shows a simple example of how to load and plot data from the "..._processed.json" files. The spreadsheet called "Descriptions of json file parameters" explains the meaning of parameters in all the json files. It includes some parameters that are not used in this manuscript.
DOI: 10.5281/zenodo.10392365
title: A diamond anvil microassembly for Joule heating and electrical measurements up to 150 GPa and 4000 K

description: Raw electrical data, metadata, and processed data (e.g. temperature and emissivity fits) for Fig. 12 of the submitted manuscript. The python script shows a simple example of how to load and plot data from the "..._processed.json" files. The spreadsheet called "Descriptions of json file parameters" explains the meaning of parameters in all the json files. It includes some parameters that are not used in this manuscript.
DOI: 10.17632/pjbw2hvgkm.1
title: households savings decisions

description: Data used in the paper "Households trust in financial institutions and in the government and savings’ decisions after a crisis"
DOI: 10.17632/5t7sdpn6x5.1
title: raw image data for "Resilient anatomy and local plasticity of naïve and stress hematopoiesis "_Figure ED 1-10_part_16

description: raw image data for "Resilient anatomy and local plasticity of naïve and stress hematopoiesis "_Figure ED 1-10_part_16
DOI: 10.17632/k3zcvkzvtp.1
title: Induction of LTP mechanisms in dually innervated dendritic spines by strong excitatory stimuli

description: Data deposit
DOI: 10.17034/498b761c-0051-45c0-a92b-4398f8fa501c
title: Temporal relationship between alcohol-related attitudes and heavy episodic drinking in adolescents: A random intercept cross lagged panel model

description: This is the dataset used in analysis of the temporal relationship between of alcohol related attitudes and heavy episodic drinking in adolescents. These data are an excerpt from the Steps Towards Alcohol Misuse Prevention Programme (STAMPP) study, a school- and community-based cluster randomised controlled trial. 

The overall aim of the trial (from which these data were extracted) was to assess the effectiveness and cost-effectiveness of a combined classroom curriculum and parental intervention on self-reported alcohol use [heavy episodic drinking (HED)] and alcohol-related harms (indicators such as getting into fights after drinking, poorer school performance and trouble with friends and family) amongst teenage pupils.

The trail was a two-arm, cluster randomised controlled trial with schools as the unit of randomisation. A total of 105 post-primary schools in Northern Ireland (NI) and Glasgow/Inverclyde Educational Authority areas participated. A total of 12,738 male and female secondary school students (intervention delivered when students were in school year 9 in NI or S2 in Scotland in the academic year 2012–13 and aged 12–13 years) were randomised. Randomisation and baseline (T0) surveys took place when children were in school year 8 or S1. Schools were randomised (1:1) by an independent statistician to the Steps Towards Alcohol Misuse Prevention Programme (STAMPP) or to education as normal (EAN). All schools were stratified by free school meal provision. Schools in NI were also stratified by school type (male/female/coeducational).

The study used two primary outcomes, a) self-reported HED (defined as self-reported consumption of ≥ 6 units in a single episode in the previous 30 days for male students and ≥ 4.5 units for female students) assessed at 33 months from baseline (T3); and b) the number of self-reported harms (harms caused by own drinking) assessed at T3. The full NIHR report can be found at https://dx.doi.org/10.3310/phr05020.

The dataset presented here were used in secondary analysis of the alcohol-related attitude questions and are therefore a subset of the full data set. The data are presented in a tab delimited [.dat] file as the analysis was undertaken in Mplus. It is also available as a CSV. Full details of the Mplus code used in the analysis can be found at https://osf.io/bmhak/?view_only=67d2dc1013af46a880662a2c8067635a
DOI: 10.5517/ccdc.csd.cc2cx85r
title: CCDC 2201904: Experimental Crystal Structure Determination

description: Related Article: Ravi Kumar Bandaru, Lopamudra Giri, Gamidi Rama Krishna, Rambabu Dandela|2024|CrystEngComm|26|248|doi:10.1039/D3CE01130E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cx88v
title: CCDC 2201907: Experimental Crystal Structure Determination

description: Related Article: Ravi Kumar Bandaru, Lopamudra Giri, Gamidi Rama Krishna, Rambabu Dandela|2024|CrystEngComm|26|248|doi:10.1039/D3CE01130E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cx8bx
title: CCDC 2201909: Experimental Crystal Structure Determination

description: Related Article: Ravi Kumar Bandaru, Lopamudra Giri, Gamidi Rama Krishna, Rambabu Dandela|2024|CrystEngComm|26|248|doi:10.1039/D3CE01130E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.