cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.h5v25/1
title: Concentration of targeted metabolites data_M. Tsuji

description: In the CE-TOFMS analysis, 219 metabolites (115 cationic, 104 anionic) were detected. Moreover, 88 metabolites, which included amino acids, organic acids, sugar phosphates, and nucleotides, were quantified using external standards and targeted metabolite analysis.
DOI: 10.5061/dryad.j333r/1
title: Measurements

description: Measurements of rodent skeletal remains
DOI: 10.5061/dryad.j333r/2
title: MNE - Minimum number of skeletal elements

description: Minimum number of skeletal elements among rodent remains from each trench and context
DOI: 10.5061/dryad.j333r/3
title: NISP - Number of individual specimens

description: Number of individual rodent specimens from each trench and context
DOI: 10.5061/dryad.j333r/4
title: Table_S1

description: For each trench and context: obtained minimum number of elements (MNE), minimum number of individuals (MNI) per species, expected MNE based on MNI, relative frequencies (abundance) based on obtained and expected MNE, mean frequencies and radiocarbon dating
DOI: 10.5061/dryad.j3j5t/1
title: Raw Data
DOI: 10.5061/dryad.jb85f/1
title: Thermal tolerance data

description: Thermal tolerance data from the heat bar experiment. Each row is an individual animal and each column describes the conditions and response for that animal. "tube" refers to the tube number for the heat bar. "row" refers to the row within the heat bar. "Species" refers to Oyster (Ostrea lurida), Atlantic drill (Urosalpinx cinerea), and Japanese drill (Ocenebra inornata). "temp" refers to the temperature during the last hour of exposure in degrees Celsius. "alive" refers to whether or not the animal was alive the following day after heat exposure (Y = yes, N = no). "survival" is a binary coding for the alive response (1 = yes, 0 = no). "size" is the shell height of the animal in millimeters."time" refers to the temporal block during which the experiment was conducted (1,2, or 3).
DOI: 10.5061/dryad.jb85f/2
title: Salinity Tolerance Data - Gastropods

description: Salinity tolerance data for oyster drills (gastropods). Each row is an individual animal and each column is a variable. "species" refers to Urosalpinx (Atlantic oyster drill) and Ocenebra (Japanese oyster drill). "salinity" is the exposure salinity in practical salinity units. "duration" is the length of exposure in days. "size" is the shell height in millimeters. "alive" is whether or not the animal survived the salinity exposure. "survival" is a numerical code for "alive" where 1 = alive and 0 = death.
DOI: 10.5061/dryad.jb85f/3
title: Salinity Tolerance Data - Oysters

description: Salinity tolerance data for Olympia oysters (Ostrea lurida). Each row is an individual animal and each column is a variable. "species" refers to oysters (invariant). "Salinity" is the exposure salinity in practical salinity units. "size" is the shell height in millimeters. "alive" is whether the animal survived the salinity exposure (yes or no). "Survival" is a numerical code for the "alive" variable (1 = alive, 0 = dead). "Duration" is the number of days that the animal was exposed to the target salinity.
DOI: 10.5061/dryad.jb85f/4
title: Thermal Growth High Ration Data - Oysters

description: Oyster growth data for thermal performance curve. Each row is an individual oyster and each column is a variable. "tile" refers to a numbered value assigned to each pvc square that oysters were settled upon. "tile.side" is the side upon which the oyster was located (a or b). "oyster.no" is a unique number assigned to every oyster. "tank" is the number assigned to each 38 liter tank during the experiment. "temp" is the temperature in degrees Celsius. "initial.area" is the shell area centimeters squared for that oyster at the beginning of the experiment. "area" is the final area in centimeters squared after the temperature exposure.
DOI: 10.5061/dryad.mp8rt/1
title: thorax_length

description: Raw thorax length measurements (mm) for each replicate and each unique cross from 7 D. melanogaster populations.
DOI: 10.5061/dryad.p2q4r/1
title: Spens_et_al_2016_DATASET

description: This is the output from the original trial conducted in 2015.
DOI: 10.5061/dryad.q4sc8/2
title: Delphi_Rohdaten - english
DOI: 10.5061/dryad.rb5s1/5
title: batch_4_fresh.plink

description: Input file for fastStructure (file 2 of 3)
DOI: 10.5061/dryad.rb5s1/6
title: batch_4_fresh.plink

description: Input file for fastStructure (file 3 of 3)
DOI: 10.5061/dryad.rc1k8/1
title: Moore & Martin 2016 JEB territorial tenures

description: Territorial tenures and phenotypic values for all individuals in study.
DOI: 10.5061/dryad.rc1k8/2
title: Moore & Martin 2016 JEB territorial disputes

description: Outcomes of all territorial disputes
DOI: 10.5061/dryad.rc1k8/3
title: Moore & Martin 2016 JEB longevity data

description: Longevity values for all dragonflies included in this study
DOI: 10.5061/dryad.rc1k8/4
title: Moore & Martin 2016 JEB decoy experiment

description: Responses of all territorial males to decoys pre- vs post-experimental augmentation
DOI: 10.5061/dryad.rc1k8/5
title: Moore & Martin 2016 JEB immune assays

description: Immune assay scores and phenotypic values of dragonflies included in study
DOI: 10.5061/dryad.s636m/1
title: DATA_Schrama_et_al_diversity

description: Raw data that underlies figures 2-5
DOI: 10.5061/dryad.s8k81/1
title: CHD_urine_102samples.tar.gz

description: CHD_urine_102samples.tar.gz
DOI: 10.5061/dryad.s8k81/2
title: CHD_serum_102samples.tar.gz

description: CHD_serum_102samples.tar.gz
DOI: 10.5061/dryad.s8k81/3
title: gut microbe mOTU profile

description: gut microbe mOTU profile
DOI: 10.5061/dryad.vs97g/1
title: IvindoData_DryadVersion

description: Large vertebrate community data and environmental characteristics for 24 2-km transects with varying hunting intensities in the Ivindo landscape in northeast Gabon.
DOI: 10.5061/dryad.118vg/1
title: BEAST Dloop phylogenetic analysis with Birth Death speciation prior
DOI: 10.5061/dryad.118vg/2
title: BEAST Dloop phylogenetic analysis with Yule speciation prior
DOI: 10.5061/dryad.118vg/3
title: Individual Based Model for anthropogenic mortality estimates
DOI: 10.5061/dryad.118vg/4
title: Sequence alignment of Chatham Island sea lions

description: Sequence alignment of Chatham Island sea lion mtDNA D-loop including all Chatham Islands individuals (NRO number, location, haplotype - C1 to 9), exemplar haplotype sequences of subantarctic individuals (SA1-3), exemplar haplotype sequences of prehistoric New Zealand individuals (NZ1-14), and outgroups (Australian sea lion, South American sea lion, New Zealand furseal). Please see Suppl. Info. Table S1 for numbers of New Zealand and subantarctic individuals for each haplotype.
DOI: 10.5061/dryad.118vg/5
title: BEAST mitogenome phylogenetic analysis with birth-death speciation prior
DOI: 10.5061/dryad.118vg/6
title: BEAST mitogenome phylogenetic analysis with Yule speciation prior
DOI: 10.5061/dryad.118vg/7
title: Chatham Island mitogenome Ion Torrent NGS raw sequences
DOI: 10.5061/dryad.118vg/8
title: Prehistoric mainland New Zealand sea lion mitogenome Ion Torrent NGS raw sequences
DOI: 10.5061/dryad.11cd0/3
title: IMa_elf_com_out_mu1_22

description: IMa output file 15 loci (cytochrome b, AM2B1 intron and 15 microsatellite loci)
DOI: 10.5061/dryad.314b2/2
title: PearlMillet_SNPs_filtered

description: Final VCF filtered used for analyses. Raw sequencing reads have been deposited on the NCBI database
DOI: 10.5061/dryad.4g0m4/1
title: Data_from_Clinchy_et_al_2016_Behavioral_Ecology
DOI: 10.5061/dryad.66bh6/1
title: Female Phonotaxis Data

description: Phonotaxis data for Gryllus firmus and Gryllus sp13.
DOI: 10.5061/dryad.6f798/1
title: 13C values of amino acids

description: Sample 13C values (‰) of amino acids. Each sample was analyzed in triplicate (mean ± SD). NA indicates missing values or replicates. The values are compiled from this study and Larsen et al. (Plos One 2013) (marked with asterisk under sample code).
DOI: 10.5061/dryad.6mq0n/1
title: Teegalapalli & Datta interviews data

description: The data contains household level socio-economic information collected from five villages in the Upper Siang district, Arunachal Pradesh. The information was collected based on interview questionnaires.
DOI: 10.5061/dryad.76jr5/1
title: Small_Mammal_Daily_Counts

description: Daily count data for 15 small mammal species collected at 108 sampling sites in the White Mountain National Forest. These data were used to model detection corrected abundance.
DOI: 10.5061/dryad.76jr5/2
title: Detection_Covariates

description: Detection covariates (temperature, precipitation, and trap type) used to model abundance for the 15 most common small mammal species.
DOI: 10.5061/dryad.76jr5/3
title: Landscape_Variables

description: Landscape covariates (trap type, elevation, percent stream/wetland, percent hardwood forest, percent mixed forest, percent softwood forest, forest age, year) used to model abundance for the 15 most common small mammal species.
DOI: 10.5061/dryad.7m47j/1
title: Site-specific changes in tree density and environmental covariates

description: Data on changes in tree density and environmental covariates, organized at the level of the geographic clusters used in analysis, from a study of woody encroachment in a South African savanna. See associated paper for additional details.
DOI: 10.5061/dryad.8fr30/1
title: JEB-2016-00177 Shenoi & Prasad 2016
DOI: 10.5061/dryad.8jv30/1
title: merge_within_each_tool

description: Merge within each tool: delly, cnvnator, pindel
DOI: 10.5061/dryad.8jv30/2
title: merged_by_tool_trio_cydno

description: chromosome 2 duplication calls merged by tool for the H. cydno (trio)
DOI: 10.5061/dryad.8jv30/3
title: merged_by_tool_trio_melpomene

description: chromosome 2 merged by tool on the trio H. melpomene samples
DOI: 10.5061/dryad.8jv30/4
title: heliconius_set.vcf

description: Heliconius set from population data (H. cydno + H. melpomene)
DOI: 10.5061/dryad.8jv30/5
title: discovery_set_cydno

description: H. cydno discovery set
DOI: 10.5061/dryad.8jv30/6
title: discovery_set_melp

description: H. melpomene discovery set
DOI: 10.5061/dryad.98b31/1
title: Eois immune data

description: The file contains immune response data on two species of Eois caterpillars feeding on different Piper species.
DOI: 10.5061/dryad.9vs26/6
title: Images and meshes for the BTx623 x IS3620C RIL population part "af"

description: The file is part "af" of a set of 7 files (aa-af) corresponding to a compressed archive (.tar.gz) that has been split (using split). These will need to be concatenated (using cat) to restore the original archive (see http://wiki.datadryad.org/Large_File_Transfer). In the archive, each directory represents a timepoint, and each timepoint contains directories with images and a mesh corresponding to RIL lines from the BTx623 x IS3620C population. Each RIL has three replicates, and the suffix indicates the replicate number.
DOI: 10.5061/dryad.br8s9/1
title: Lewandrowski et al. JAPPL2016-00640

description: This data file contains five spreadsheets of the data described in Lewandrowski et al. JAPPL2016-00640.R1. The first worksheet contains the validation experiment for the different seed treatments tested in Triodia epactia and Triodia wiseana under optimal germination conditions. The second worksheet is the data used to quantify b50-thresholds under water stress of the different seed treatments using three parameter nonlinear functions.The third worksheet comprises the field recruitment data under the various rainfall events tested, along with the fourth spreadsheet containing the average soil water potential and temperature for the trial period. The last worksheet contains the modelled cumulative mean time parameters according to the b50 water potential thresholds. All methods and materials are described in the manuscript. For further information, please contact the authors, or wolfgang.lewandrowski@bgpa.wa.gov.au for assistance.
DOI: 10.5061/dryad.cj965/1
title: Fortes_et_al_2016_mtDNA_alignment

description: MtDNA sequence alignment used in Fortes et al. 2016 Mol Ecol. See README for further info.
DOI: 10.5061/dryad.f12cg/1
title: Replication profile of Frataxin locus in FRDA GM15850 cells
DOI: 10.5061/dryad.f12cg/2
title: Replication profile of Frataxin locus in FRDA_GM16227 cells
DOI: 10.5061/dryad.f12cg/3
title: Replication profile of Frataxin locus in control_GM15851 cells
DOI: 10.5061/dryad.f12cg/4
title: Replication profile of Frataxin locus in control_H691 cells
DOI: 10.5061/dryad.g1t69/1
title: TableS2

description: Collection information, fitness, Genbank Accession, and closest 16S match in Genbank for each rhizobium isolate (.xls format in Microsoft Excel)
DOI: 10.5061/dryad.h3ts8/1
title: Baattrup-Pedersen et al._DVPI_PHYS AND CHEM_MEE2016

description: DVPI and physical and chemical data
DOI: 10.5061/dryad.h3ts8/2
title: Baattrup-Pedersen et al._DVPI_CWM_MEE2016

description: DVPI and plant trait characteristics
DOI: 10.5061/dryad.hn8gp.1
title: Data from: ZeitZeiger: supervised learning for high-dimensional data from an oscillatory system
DOI: 10.5061/dryad.hn8gp.2
title: Data from: ZeitZeiger: supervised learning for high-dimensional data from an oscillatory system
DOI: 10.5061/dryad.hn8gp.2/1.2
title: Data, code, and results used in the paper.

description: The zip file contains all gene expression data, metadata, R code, and results, and can be used to reproduce all the figures in the paper. See the readme.txt for instructions.
DOI: 10.5061/dryad.j333r/5
title: Table_S2-4

description: Table S2 - Summary measurements of Orkney vole skeletal elements. Table S3 - Rodent skeletal element relative frequencies and long bone fragmentation. Table S4 - Skeletal fragmentation in contexts from each trench.
DOI: 10.5061/dryad.jb85f/5
title: Thermal Growth Low Ration Data - Oysters

description: Growth data for low ration oyster experiment. Each row is an individual animal and each column is a variable. "food.ration" is low (invariant). "tile" refers to the pvc plate that each oyster is assigned to. "initial.area" is the size in centimeters squared for the oyster at the beginning of the experiment. "final.area" is the oyster size in centimeters squared at the end of the experiment. "group" is a numerical code for the temperature treatment. "temp" is the temperature that the oysters were assigned to in degrees Celsius. "growth" is the difference between the final and initial size in centimeters squared. "cum.growth" is the cumulative growth for each tile in centimeters squared.
DOI: 10.5061/dryad.jb85f/6
title: Thermal Growth High Ration Data - Gastropods

description: Thermal growth data for the gastropods under high ration availability. Each row is an individual animal and each column is a variable. "species" is either Atlantic drill (Urosalpinx cinerea) or Japanese drill (Ocenebra inornata). "snail.no" is a unique number given to every experimental snail. "teaball" is a number given to each housing. "temperature" is the water temperature that each snail was exposed to in degrees Celsius. "tank" is the tank number that each teaball was housed in. "alive" is a numerical code for whether or not the snail survived the experiment (1 = alive, 0 = dead). "initial.sh" is the shell height of each snail at the beginning of the experiment in millimeters. "final.sh" is the shell heigh of each snail at the end of the experiment in millimeters. "final.sh.width" is the shell width (at widest point) at the end of the experiment. "notes" are given for a subset of snails.
DOI: 10.5061/dryad.jb85f/7
title: Environmental Data Tomales - Middle Bay

description: Physical environmental data from "Middle Bay" site within Tomales Bay, CA. Data was collected with a YSI 6920V2 sonde deployed at latitude  38.150328 degrees and longitude -122.905767 degrees. Data collection began on November 24, 2010 and ended on January 16, 2014. Each row is an observation and each column is a variable. "date" is the date in month/day/year format. "time" is the local time in hour:minute:second format. "DateTimeStamp" is a concatenated string of "date" and "time". "temp" is the water temperature in degrees Celsius. "spcond" is the specific conductivity in millisiemens per centimeter. "salinity" is the calculated salinity from specific conductivity in practical salinity units. "pH" is the water column pH in total scale. "do.sat" is the dissolved oxygen in percent saturation. "do.mgl" is the dissolved oxygen in milligrams per liter.
DOI: 10.5061/dryad.jb85f/8
title: Environmental Data Tomales - Inner Bay

description: Environmental data from Tomales Bay, CA. Temperature data collected with an iButton data logger (DS-1922L). Logger was deployed at 0.0 meters above mean lower low water level at latitude 38.115117 degrees and longtitude -122.870695 degrees. "date.time" is the date and time in month/dat/year hour:minute format. "oday" is the ordinal day. "tide.time" is the time of sea level measurements. "aerial.exposure" is whether the sensor is estimated to be in air or water given the tide. "water.temp" is the temperature of the water in degrees Celsius. "air.temp" is the temperature of the air in degrees Celsius.
DOI: 10.5061/dryad.mp8rt/10
title: wing_loading

description: Mean wing area, mass per female fly, and wing loading for unique crosses from each of two populations.
DOI: 10.5061/dryad.mp8rt/2
title: wing_length_depth

description: Wing length and depth measurements for replicates and unique crosses from 7 D. melanogaster populations
DOI: 10.5061/dryad.mp8rt/3
title: wing_cell_size

description: Cell size measurements (averaged across 5 replicates) for two different locations on D. melanogaster wings.
DOI: 10.5061/dryad.mp8rt/4
title: mean_skeletal_muscle_nucleus_size

description: Nucleus size of 5 crosses from each of two populations, averaged across 5 replicates from each cross.
DOI: 10.5061/dryad.mp8rt/5
title: Mean_muscle_fiber_width

description: Mean longitudinal thoracic muscle fiber width for 5 unique crosses from each of 2 populations, averaged across 5 replicates per cross.
DOI: 10.5061/dryad.mp8rt/6
title: mean_muscle_width

description: Mean width of the third dorsolongitudinal muscle of the thorax from multiple unique crosses (averaged across 5 replicates per cross) from each of two populations.
DOI: 10.5061/dryad.mp8rt/7
title: mean_egg_size

description: Mean egg size of unique crosses (5 replicates per cross) for 2 populations
DOI: 10.5061/dryad.mp8rt/8
title: egg_laying_rate

description: Mean egg laying rate from unique crosses (averaged across 5 replicates per cross) from 2 populations, from both sea level air pressure (control) and simulated high elevation air pressure (Treatment)
DOI: 10.5061/dryad.mp8rt/9
title: mean_development_time

description: Mean development time from unique crosses (at least 5 replicates per cross) from each of two populations. Data obtained from both sea level (control) and simulated high elevation air pressure (Treatment)
DOI: 10.5061/dryad.sh0h0/1
title: Afrobatrachia_Single_Tree_ACE_SIMMAP

description: This directory contains character codings, a phylogenetic tree, and R script for performing ancestral character reconstructions with ACE (ape) and stochastic character mapping (phytools). This includes model testing (ER, ARD, SYM) for each character in ACE, as well as performing reconstructions with ACE and simmap, and plotting reconstructions of nodes with each analysis type on the phylogeny.
DOI: 10.5061/dryad.sh0h0/2
title: Afrobatrachia_Multi_Tree_SIMMAP

description: This directory contains character codings, a sample of trees (n=100) from BEAST run, and R script for performing stochastic character mapping (phytools) on multiple trees. To account for topological uncertainty, the simmap function is carried out with 100 replicates on each of 100 trees. The results are summarized across simulations for each character.
DOI: 10.5061/dryad.v43rd/1
title: BEAST XML input files used for the data analysis
DOI: 10.5061/dryad.vb957/1
title: LMLP_fitting_code_Honsey_et_al_Ecol_Apps

description: This file contains example R code for estimating age-at-maturity and other life history parameters from length-at-age using a Lester biphasic growth model. The model is fit using a profile likelihood approach. This code corresponds with the Ecological Applications article by Honsey et al. entitled "Accurate estimates of age-at-maturity from the growth trajectories of fishes and other ectotherms".
DOI: 10.5061/dryad.vb957/2
title: LMLP_simulations_Honsey_et_al_Ecol_Apps

description: This file contains example code for running simulations to determine the data quality requirements and estimate reliability of the LMLP algorithm as described in the Ecological Applications article by Honsey et al. entitled "Accurate estimates of age-at-maturity from the growth trajectories of fishes and other ectotherms". In this file, growth parameters and sample sizes-at-age are loosely based on walleye Sander vitreus (age-at-maturity = 5 yrs, immature growth intercept = 100 mm, immature growth slope = 50 mm/yr). See Honsey et al. (main text and supplemental file) for details.
DOI: 10.5061/dryad.vb957/3
title: Haddock_data_Honsey_et_al_Ecol_Apps

description: These data describe haddock (Melanogrammus aeglefinus) age (yr), length (cm), sex, and maturity during spring 2015 in the Gulf of Maine. These data were collected as part of the National Oceanic and Atmospheric Administration's Northeast Fisheries Science Center’s bottom trawl surveys (data provided by Mike Palmer, NOAA).
DOI: 10.5061/dryad.vb957/5
title: Salamander_data_Honsey_et_al_Ecol_Apps

description: These data describe age (yr), snout vent length (mm), and maturity of seal salamanders (Desmognathus monticola) collected from Wolf Creek, North Carolina, USA during 1994-1995. These data were provided by Dr. Richard Bruce, Professor Emeritus, Western Carolina University.
DOI: 10.5061/dryad.vb957/6
title: Skate_data_Honsey_et_al_Ecol_Apps

description: These data describe the sex, age (yr), total length (cm), and maturity of Alaska skate (Bathyraja parmifera) taken from the eastern Bering Sea from 2003-2005. These data were collected by the National Oceanic and Atmospheric Administration's Fisheries groundfish trawl surveys (2003-2004) and by the North Pacific Groundfish Observer Program on flatfish trawlers and Pacific cod longline vessels (2004-2005). These data were provided by Beth Matta (NOAA).
DOI: 10.5061/dryad.118vg/10
title: Pinniped whole mitogenome phylogenetic alignment
DOI: 10.5061/dryad.118vg/9
title: BayeSSC .par files
DOI: 10.5061/dryad.20c5c/10
title: Cv_VMN_Injection_40minCirculation

description: VMN particle injection, 40 min circulation time, particle concentration map
DOI: 10.5061/dryad.20c5c/11
title: Psi_VMN_Injection_40minCirculation

description: VMN particle injection, 40 min circulation time, map of the particles adhering to the capillary walls
DOI: 10.5061/dryad.20c5c/12
title: Tt_VMN_Injection_12hCirculation

description: VMN particle injection, 12 hours circulation time, temperature map
DOI: 10.5061/dryad.20c5c/7
title: Cv_IONP_Injection_40min

description: IONP particle injection, 40 min circulation time, particle concentration maps
DOI: 10.5061/dryad.20c5c/8
title: Tt_IONP_Injection_40min

description: IONP particle injection, 40 min circulation time, temperature maps
DOI: 10.5061/dryad.20c5c/9
title: Tt_VMN_Injection_40minCirculation

description: VMN particle injection, 40 min circulation time, temperature map
DOI: 10.5061/dryad.20h3k/1
title: relevant data

description: Relevant data underlying the results.
DOI: 10.5061/dryad.2598k/1
title: Data_stage first seed set_experiment 1

description: Data on stage of first seed set following experimental crosses at floral developmental stage 1-4 in Collinsia heterophylla. Recipients and pollen donor were grown in either high or low levels of soil resources.