cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.bdyerh
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Passiflora zapalinamensis Kuethe, Encina & Cruz-Anaya"
 ]
}

 The dataset includes 41 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0178632-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c2yxex
title: Occurrence Download

description: A dataset containing 2436 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Fossil",
 "OccurrenceStatus is Present",
 "TaxonKey is Odobenidae"
 ]
}

 The dataset includes 2436 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198493-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2xuqwq
title: Occurrence Download

description: A dataset containing 14966 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Marine Biological Reference Collections: CBMR-General (ICM-CSIC)"
 ]
}

 The dataset includes 14966 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082388-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x0cxk7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Octopus vulgaris Cuvier, 1797",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-4.921875 39.909736,-3.515625 30.145127,37.96875 27.059125,40.078125 36.597889,13.359375 48.458351,-4.921875 39.909736))",
 "BasisOfRecord is Specimen",
 "Year 1990-2015"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001050-151016162008034/datasets/export for details.
DOI: 10.15468/dl.7ezow0
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Month is greater than or equal to November",
 "Country is Mexico",
 "TaxonKey is Cenchrus ciliaris L."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015363-151016162008034/datasets/export for details.
DOI: 10.15468/dl.2cjsgb
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eragrostis gloeodes Ekman"
 ]
}

 The dataset includes 16 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198487-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e7exnr
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myrcia eriocephala (Urb.) K.Campbell & Peguero"
 ]
}

 The dataset includes 20 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0178633-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tmgfsp
title: Occurrence Download

description: A dataset containing 30280 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Peromyscus boylii (Baird, 1855)"
 ]
}

 The dataset includes 30280 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009359-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.51qtai
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Octopus vulgaris Cuvier, 1797",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-4.921875 39.909736,-3.515625 30.145127,37.96875 27.059125,40.078125 36.597889,13.359375 48.458351,-4.921875 39.909736))",
 "BasisOfRecord is Specimen",
 "Year 1990-2015"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001046-151016162008034/datasets/export for details.
DOI: 10.15468/dl.qcbtgf
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eragrostis guianensis Hitchc."
 ]
}

 The dataset includes 60 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198498-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cgpni3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "Month is greater than or equal to January",
 "Country is Mexico",
 "TaxonKey is Angiopteris evecta (G.Forst.) Hoffm."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015368-151016162008034/datasets/export for details.
DOI: 10.15468/dl.zebw5e
title: Occurrence Download

description: A dataset containing 14187 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tapirira guianensis Aubl."
 ]
}

 The dataset includes 14187 records from 236 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082389-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4axjab
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((32.06967 -9.47489,34.86294 -9.12298,31.32186 -9.51888,31.78374 -17.41482,36.5565 -17.41482,35.34681 -9.89278,34.97291 -9.14498,32.06967 -9.47489))",
 "TaxonKey is Lantana L."
 ]
}

 The dataset includes 25 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021106-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ja3cp
title: Occurrence Download

description: A dataset containing 162 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is one of (Bolivia (Plurinational State of), Argentina, Colombia, Peru, Ecuador)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Breutelia austroarcuata (Müll.Hal.) Paris"
 ]
}

 The dataset includes 162 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021108-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k3qb5n
title: Occurrence Download

description: A dataset containing 1346 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neochelon falcipinnis (Valenciennes, 1836)"
 ]
}

 The dataset includes 1346 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021109-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e8asha
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Catches or strandings of Balaenoptera omurai"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021110-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2kf56d
title: CCDC 2366143: Experimental Crystal Structure Determination

description: Related Article: Y.-Y. Zheng, D.-S. Su, Q.-H. Yao, M.-M. Huang|2024|IUCrData|9|x240630|doi:10.1107/S2414314624006308
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.j9wxqv
title: Occurrence Download

description: A dataset listing the 9 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Balaenoptera musculus (Linnaeus, 1758)"
 ]
}

 The dataset's 9 records were derived from 240 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021104-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rbxsq9
title: Occurrence Download

description: A dataset containing 794 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((31.59672 -8.91468,31.78495 -18.46031,36.8401 -18.35276,36.65188 -8.75334,31.59672 -8.91468))",
 "TaxonKey is Lantana L."
 ]
}

 The dataset includes 794 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021111-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h5ynym
title: Occurrence Download

description: A dataset containing 171 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "TaxonKey is Breutelia brittoniae Renauld & Cardot"
 ]
}

 The dataset includes 171 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021112-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mr92wj
title: Occurrence Download

description: A dataset containing 181408 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "TaxonKey is one of (Aponogeton distachyos L.f., Arthurdendyus triangulatus (Dendy, 1895), Cabomba caroliniana A.Gray, Callosciurus finlaysonii (Horsfield, 1823), Cherax destructor Clark, 1936, Corvus splendens Vieillot, 1817, Crassula helmsii (Kirk) Cockayne, Elodea densa (Planch.) Casp., Eriocheir sinensis H.Milne Edwards, 1853, Erythranthe guttata (DC.) G.L.Nesom, Faxonius immunis (Hagen, 1870), Faxonius juvenilis (Hagen, 1870), Faxonius rusticus (Girard, 1852), Faxonius virilis (Hagen, 1870), Gambusia affinis (Baird & Girard, 1853), Heracleum mantegazzianum Sommier & Levier, Heracleum persicum Desf. ex Fisch., C.A.Mey. & Avé-Lall., Heracleum pubescens (Hoffm.) M.Bieb., Houttuynia cordata Thunb., Hydrocotyle ranunculoides L.f., Impatiens glandulifera Royle, Koenigia polystachya (Wall. ex Meisn.) T.M.Schust. & Reveal, Lagarosiphon major (Ridl.) Moss, Lepomis gibbosus (Linnaeus, 1758), Limnoperna fortunei (Dunker, 1857), Ludwigia grandiflora (Michx.) Greuter & Burdet, Ludwigia peploides (Kunth) P.H.Raven, Lysichiton americanus Hultén & H.St.John, Morone americana (Gmelin, 1789), Muntiacus reevesi (Ogilby, 1839), Myriophyllum aquaticum (Vell.) Verdc., Myriophyllum heterophyllum Michx., Pacifastacus leniusculus (Dana, 1852), Petasites japonicus (Siebold & Zucc.) Maxim., Pontederia cordata L., Procambarus acutus (Girard, 1852), Procambarus clarkii (Girard, 1852), Procambarus virginalis Lyko, 2017, Pseudorasbora parva (Temminck & Schlegel, 1846), Pycnonotus cafer (Linnaeus, 1766), Saururus cernuus L., Sciurus carolinensis Gmelin, 1788, Sciurus niger Linnaeus, 1758, Solenopsis invicta Buren, 1972, Solenopsis richteri Forel, 1909, Threskiornis aethiopicus (Latham, 1790), Vespa velutina Lepeletier, 1836, Zizania latifolia (Griseb.) Hance ex F.Muell.)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 181408 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021098-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wuwddb
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Catches or strandings of Balaenoptera omurai"
 ]
}

 The dataset's 1 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021107-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8w3rzd
title: Occurrence Download

description: A dataset containing 433 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is one of (Colombia, Bolivia (Plurinational State of), Ecuador, Venezuela (Bolivarian Republic of), Peru)",
 "TaxonKey is Breutelia inclinata (Hampe & Lorentz) A.Jaeger"
 ]
}

 The dataset includes 433 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021113-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fhusvk
title: Occurrence Download

description: A dataset containing 523 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Elliptio arca (Conrad, 1834))"
 ]
}

 The dataset includes 523 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021114-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ej8bxx
title: Occurrence Download

description: A dataset containing 1043810 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Belgium, Germany, Netherlands)",
 "TaxonKey is one of (Ondatra zibethicus (Linnaeus, 1766), Myocastor coypus (Molina, 1782))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1043810 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021097-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n8ctef
title: Occurrence Download

description: A dataset containing 639 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is one of (Peru, Argentina, Venezuela (Bolivarian Republic of), Ecuador, Colombia, Bolivia (Plurinational State of), Chile)",
 "TaxonKey is Breutelia integrifolia (Taylor) A.Jaeger"
 ]
}

 The dataset includes 639 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021115-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10959913
title: Endothelion / Lines / hCMEC_D3

description: Large-scale comparison of Ion Channels and Transporters (ICTs) expression in healthy endothelium.
DOI: 10.5281/zenodo.10960146
title: Endothelion / Lines / hCMEC_D3

description: Large-scale comparison of Ion Channels and Transporters (ICTs) expression in healthy endothelium.
DOI: 10.5281/zenodo.12687137
title: Endothelion / Lines / hCMEC_D3

description: Large-scale comparison of Ion Channel and Transporter (ICT) expression in healthy endothelium
description: An omics insight into the expression of the ion transport toolkit in human cerebrovascular endothelial cells

The Blood-Brain Barrier (BBB) is crucial in neurovascular coupling and for maintaining a controlled environment within the brain InterStitial Fluid (ISF) for reliable neuronal signaling. Key to these processes are intracellular calcium dynamics taking place at the level of brain endothelial cells, which influences BBB integrity by modulating tight junctions and nitric oxide production for vasodilation. However, despite its widely recognized functional role, the molecular actors that enable proper BBB functioning are often overlooked. To identify the main Ion Channels and Transporters (ICTs) contributing to the physiological role of the BBB, we carried out a transcriptional meta-analysis aggregating gene expression data from nine independent and publicly available RNA-Seq studies on the hCMEC/D3 cell line, the most widely used in vitro model of BBB. We selected 551 genes coding for ion channels, transporters, membrane ATPases, and some GPCRs. Then, using a tailor-made bioinformatics pipeline, we highlighted a signature expression profile with a potential functional and pathological significance. We identified distinct families of functionally related ICTs underpinning the most distinctive features of the human cerebrovascular endothelium, including the secretion of ISF, the maintenance of BBB integrity, the adaptive regulation of the cerebral blood flow, the uptake and extrusion of trace metals, as well as the membrane components of the endothelial calcium toolkit.
DOI: 10.5281/zenodo.12729454
title: Endothelion / Lines / hCMEC_D3

description: Large-scale comparison of Ion Channel and Transporter (ICT) expression in healthy endothelium
description: An omics insight into the expression of the ion transport toolkit in human cerebrovascular endothelial cells

The Blood-Brain Barrier (BBB) is crucial in neurovascular coupling and for maintaining a controlled environment within the brain InterStitial Fluid (ISF) for reliable neuronal signaling. Key to these processes are intracellular calcium dynamics taking place at the level of brain endothelial cells, which influences BBB integrity by modulating tight junctions and nitric oxide production for vasodilation. However, despite its widely recognized functional role, the molecular actors that enable proper BBB functioning are often overlooked. To identify the main Ion Channels and Transporters (ICTs) contributing to the physiological role of the BBB, we carried out a transcriptional meta-analysis aggregating gene expression data from nine independent and publicly available RNA-Seq studies on the hCMEC/D3 cell line, the most widely used in vitro model of BBB. We selected 551 genes coding for ion channels, transporters, membrane ATPases, and some GPCRs. Then, using a tailor-made bioinformatics pipeline, we highlighted a signature expression profile with a potential functional and pathological significance. We identified distinct families of functionally related ICTs underpinning the most distinctive features of the human cerebrovascular endothelium, including the secretion of ISF, the maintenance of BBB integrity, the adaptive regulation of the cerebral blood flow, the uptake and extrusion of trace metals, as well as the membrane components of the endothelial calcium toolkit.
description: Version report

x.FASTQ Version Sum x.9.57.0

FastQC v.0.12.1MultiQC v.1.21BBDuk v.39.01STAR v.2.7.11aRSEM v.1.3.1

Java v.22.0.1 2024-04-16Python v.3.12.4R v.4.3.3 (2024-02-29)

BiocManager v.1.30.22PCAtools v.2.12.0org.Hs.eg.db v.3.17.0gtools v.3.9.5stringi v.1.8.3
DOI: 10.5281/zenodo.10959338
title: Endothelion / Lines / hCMEC_D3

description: Large-scale comparison of Ion Channel and Transporter (ICT) expression in healthy endothelium
description: An omics insight into the expression of the ion transport toolkit in human cerebrovascular endothelial cells

The Blood-Brain Barrier (BBB) is crucial in neurovascular coupling and for maintaining a controlled environment within the brain InterStitial Fluid (ISF) for reliable neuronal signaling. Key to these processes are intracellular calcium dynamics taking place at the level of brain endothelial cells, which influences BBB integrity by modulating tight junctions and nitric oxide production for vasodilation. However, despite its widely recognized functional role, the molecular actors that enable proper BBB functioning are often overlooked. To identify the main Ion Channels and Transporters (ICTs) contributing to the physiological role of the BBB, we carried out a transcriptional meta-analysis aggregating gene expression data from nine independent and publicly available RNA-Seq studies on the hCMEC/D3 cell line, the most widely used in vitro model of BBB. We selected 551 genes coding for ion channels, transporters, membrane ATPases, and some GPCRs. Then, using a tailor-made bioinformatics pipeline, we highlighted a signature expression profile with a potential functional and pathological significance. We identified distinct families of functionally related ICTs underpinning the most distinctive features of the human cerebrovascular endothelium, including the secretion of ISF, the maintenance of BBB integrity, the adaptive regulation of the cerebral blood flow, the uptake and extrusion of trace metals, as well as the membrane components of the endothelial calcium toolkit.
description: Version report

x.FASTQ Version Sum x.9.57.0

FastQC v.0.12.1MultiQC v.1.21BBDuk v.39.01STAR v.2.7.11aRSEM v.1.3.1

Java v.22.0.1 2024-04-16Python v.3.12.4R v.4.3.3 (2024-02-29)

BiocManager v.1.30.22PCAtools v.2.12.0org.Hs.eg.db v.3.17.0gtools v.3.9.5stringi v.1.8.3
DOI: 10.5281/zenodo.10959339
title: Endothelion / Lines / hCMEC_D3

description: Large-scale comparison of Ion Channels and Transporters (ICTs) expression in healthy endothelium.
DOI: 10.5281/zenodo.10959743
title: Endothelion / Lines / hCMEC_D3

description: Large-scale comparison of Ion Channels and Transporters (ICTs) expression in healthy endothelium.
DOI: 10.5281/zenodo.10960021
title: Endothelion / Lines / hCMEC_D3

description: Large-scale comparison of Ion Channels and Transporters (ICTs) expression in healthy endothelium.
DOI: 10.5281/zenodo.12729644
title: Post-transition state trajectories and transition state structures of 4+2/6+4 cycloadditions | BGAN-EPS outputs

description: dataset.zip and log.zip are the dataset and outputs for the bidirectional generative adversarial network - entropic path sampling (BGAN-EPS). The source code can be found at https://github.com/rshin1209/bgan_eps.

dataset.zip includes post-TS trajectories (xyz format) and transition state structures (pdb format) for the following 4+2/6+4 cycloadditions:



Diene/triene cycloaddition (i.e., dta)

Tethered-diene/triene cycloaddition (i.e., dtb)

NgnD-catalyzed Diels–Alder reaction (i.e., ngnd)

SpnF-catalyzed Diels–Alder reaction (i.e., spnf)


dataset.zip can be unzipped and directly used for the BGAN-EPS method.

XXX_r2p_1 refers to 4+2-adduct and XXX_r2p_2 refers to 6+4-adduct.

log.zip includes outputs of the BGAN-EPS for the above 4+2/6+4 cycloadditions. The graphing for entropic profiles and entropy decomposition analysis can also be found at Git Hub link.