cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5614945
title: Dataset_final_update_161201.dta

description: This dataset includes nascent entrepreneurial activity with opportunity and necessity motivation as well as government expenditures by function and miscellaneous macroeconomic factors as control variables.
DOI: 10.6084/m9.figshare.5614966
title: Dataset for: Investigation of two stage meta-analysis methods for joint longitudinal and time-to-event data through simulation and real data application

description: Background: Joint modelling of longitudinal and time-to-event data is often preferred over separate longitudinal or time-to-event analyses as it can account for study dropout, error in longitudinally measured covariates, and correlation between longitudinal and time-to-event outcomes. The joint modelling literature focuses mainly on the analysis of single studies with no methods currently available for the meta-analysis of joint model estimates from multiple studies. Methods: We propose a two stage method for meta-analysis of joint model estimates. These methods are applied to the INDANA dataset to combine joint model estimates of systolic blood pressure (SBP) with time to death, time to myocardial infarction and time to stroke. Results are compared to meta-analyses of separate longitudinal or time-to-event models. A simulation study is conducted to contrast separate versus joint analyses over a range of scenarios. Results: Using the real dataset similar results were obtained using the separate and joint analyses. However, the simulation study indicated a benefit of use of joint rather than separate methods in a meta-analytic setting where association exists between the longitudinal and time-to-event outcomes. Conclusions: Where evidence of association between longitudinal and time-to-event outcomes exists, results from joint models over standalone analyses should be pooled in two stage meta-analyses.
DOI: 10.6084/m9.figshare.5614966.v1
title: Dataset for: Investigation of two stage meta-analysis methods for joint longitudinal and time-to-event data through simulation and real data application

description: Background: Joint modelling of longitudinal and time-to-event data is often preferred over separate longitudinal or time-to-event analyses as it can account for study dropout, error in longitudinally measured covariates, and correlation between longitudinal and time-to-event outcomes. The joint modelling literature focuses mainly on the analysis of single studies with no methods currently available for the meta-analysis of joint model estimates from multiple studies. Methods: We propose a two stage method for meta-analysis of joint model estimates. These methods are applied to the INDANA dataset to combine joint model estimates of systolic blood pressure (SBP) with time to death, time to myocardial infarction and time to stroke. Results are compared to meta-analyses of separate longitudinal or time-to-event models. A simulation study is conducted to contrast separate versus joint analyses over a range of scenarios. Results: Using the real dataset similar results were obtained using the separate and joint analyses. However, the simulation study indicated a benefit of use of joint rather than separate methods in a meta-analytic setting where association exists between the longitudinal and time-to-event outcomes. Conclusions: Where evidence of association between longitudinal and time-to-event outcomes exists, results from joint models over standalone analyses should be pooled in two stage meta-analyses.
DOI: 10.6084/m9.figshare.5615035.v1
title: Systematic literature review and network meta-analysis of cladribine tablets versus alternative disease-modifying treatments for relapsing-remitting multiple sclerosis

description: <b><i>Objective</i></b>: To assess the comparative efficacy and safety of cladribine tablets versus alternative disease modifying treatments (DMTs) in patients with active relapsing-remitting multiple sclerosis (RRMS), and in a subgroup with high disease activity (HRA+DAT), using systematic literature review (SLR) and network meta-analysis (NMA). <b><i>Methods</i></b>: MEDLINE, Embase, MEDLINE In-Process and CENTRAL databases were systematically searched to identify English-language publications of relevant studies of approved DMTs for RRMS. Searches were conducted from database inception to January 2017. Conference websites and trial registries were also searched. NMA considered the effects of DMTs on annualized relapse rate (ARR), confirmed disease progression (CDP), no evidence of disease activity (NEDA), and safety. <b><i>Results</i></b>: Of 10,825 articles retrieved and screened, 44 studies assessing 12 DMTs contributed to the NMA. In patients with active RRMS, cladribine tablets were associated with a significant 58% reduction in ARR versus placebo (p <b><i>Conclusion</i></b>: In this first NMA to consider cladribine tablets, ocrelizumab, and daclizumab for treatment of RRMS, cladribine tablets are a comparatively effective and safe alternative to other DMTs in both active RRMS and HRA+DAT populations.
DOI: 10.6084/m9.figshare.5614843
title: Dataset for: Doxycycline treatment efficacy in dogs with naturally-occurring <i>Anaplasma phagocytophilum</i> infection

description: Objectives: To evaluate doxycycline treatment efficacy and post-treatment pathogen persistence in dogs naturally infected with <i>Anaplasma phagocytophilum</i> in endemic regions of the US. Methods: Symptomatic dogs in four US states (MN, WI, CT and CA) were evaluated before treatment with doxycycline and approximately 30 and 60 days post-treatment. Clinicopathological parameters, presence of co-exposures and presence of <i>A. phagocytophilum</i> DNA in whole blood and lymph node samples were evaluated and compared between <i>A. phagocytophilum</i> infected and uninfected dogs. Results: Forty-two dogs fulfilled the inclusion criteria, with 16 dogs (38%) blood PCR positive and 26 dogs (62%) blood PCR negative for <i>A. phagocytophilum</i>. At initial evaluation, the proportion of clinicopathological abnormalities was similar between <i>A. phagocytophilum</i> infected and uninfected dogs, with exception of thrombocytopenia and lymphopenia, which were statistically more prevalent among <i>A. phagocytophilum</i> infected dogs. Treatment with doxycycline resulted in resolution of all clinical abnormalities in <i>A. phagocytophilum</i> infected dogs; 4 dogs had persistent haematological abnormalities, including mild leukopenia, eosinopenia and lymphopenia. All 16 <i>A. phagocytophilum</i> infected dogs became PCR negative in blood approximately 30 and 60 days after treatment onset. Additionally, 13/13 (100%) of lymph node specimens tested post-treatment were PCR negative. Select clinicopathological abnormalities persisted in <i>A. phagocytophilum</i> uninfected dogs after treatment. Clinical Significance: The results of this study support the efficacy of doxycycline therapy for clinical treatment of dogs naturally infected with <i>A. phagocytophilum</i> in the US. This study did not find clinical, haematologic or microbiologic indicators that supported the persistence of <i>A. phagocytophilum</i> infection in naturally infected dogs following treatment with doxycycline for 28 days.
DOI: 10.6084/m9.figshare.5614843.v1
title: Dataset for: Doxycycline treatment efficacy in dogs with naturally-occurring <i>Anaplasma phagocytophilum</i> infection

description: Objectives: To evaluate doxycycline treatment efficacy and post-treatment pathogen persistence in dogs naturally infected with <i>Anaplasma phagocytophilum</i> in endemic regions of the US. Methods: Symptomatic dogs in four US states (MN, WI, CT and CA) were evaluated before treatment with doxycycline and approximately 30 and 60 days post-treatment. Clinicopathological parameters, presence of co-exposures and presence of <i>A. phagocytophilum</i> DNA in whole blood and lymph node samples were evaluated and compared between <i>A. phagocytophilum</i> infected and uninfected dogs. Results: Forty-two dogs fulfilled the inclusion criteria, with 16 dogs (38%) blood PCR positive and 26 dogs (62%) blood PCR negative for <i>A. phagocytophilum</i>. At initial evaluation, the proportion of clinicopathological abnormalities was similar between <i>A. phagocytophilum</i> infected and uninfected dogs, with exception of thrombocytopenia and lymphopenia, which were statistically more prevalent among <i>A. phagocytophilum</i> infected dogs. Treatment with doxycycline resulted in resolution of all clinical abnormalities in <i>A. phagocytophilum</i> infected dogs; 4 dogs had persistent haematological abnormalities, including mild leukopenia, eosinopenia and lymphopenia. All 16 <i>A. phagocytophilum</i> infected dogs became PCR negative in blood approximately 30 and 60 days after treatment onset. Additionally, 13/13 (100%) of lymph node specimens tested post-treatment were PCR negative. Select clinicopathological abnormalities persisted in <i>A. phagocytophilum</i> uninfected dogs after treatment. Clinical Significance: The results of this study support the efficacy of doxycycline therapy for clinical treatment of dogs naturally infected with <i>A. phagocytophilum</i> in the US. This study did not find clinical, haematologic or microbiologic indicators that supported the persistence of <i>A. phagocytophilum</i> infection in naturally infected dogs following treatment with doxycycline for 28 days.
DOI: 10.6084/m9.figshare.5614705
title: Supplemental table S1

description: Natural history data from the literature, per species, nest architecture, nest demography, arthropods collected in the waste midden of a <i>Sericomyrmex mayri</i>, voucher specimens.
DOI: 10.6084/m9.figshare.5614750
title: Hyperedge_Sample_data.zip

description: includes 10,000 truth graph templates, 12 subjects forward, inverse and fidelity optimized sparse collapsing operator (Korhonen et al., 2014).
DOI: 10.6084/m9.figshare.5614600
title: Awac data

description: Data generate by AWAC Nortek at Xcalak Reefs<br>
DOI: 10.6084/m9.figshare.5614750.v1
title: Hyperedge_Sample_data.zip

description: includes 10,000 truth graph templates, 12 subjects forward, inverse and fidelity optimized sparse collapsing operator (Korhonen et al., 2014).
DOI: 10.6084/m9.figshare.5614705.v1
title: Supplemental table S1

description: Natural history data from the literature, per species, nest architecture, nest demography, arthropods collected in the waste midden of a <i>Sericomyrmex mayri</i>, voucher specimens.
DOI: 10.6084/m9.figshare.5614588
title: Latitudinal gradients in phosphorus and vegetation biomass for Sweden and Denmark

description: FROM: Seekel, D., J.-F. Lapierre, and K.S. Cheruvelil. 2018. A geography of lake carbon cycling. Forthcoming in Limnology & Oceanography Letters. These data were combined for a figure depicting strong latitudinal gradients in phosphorus fertilizer and manure application and aboveground vegetation biomass for Sweden and Denmark. An intersection between human and natural gradients can lead to cross-regional contrasts in energy and mass transfer to lakes and explain the presence of thresholds in lake C cycling. Data were averaged within latitudinal bands for the extent of Sweden and Denmark and plotted as splines to emphasize the overall patterns. Data sources are: Cheruvelil, K.S. J.-F. Lapierre, and D. Seekell. 2017. Latitudinal gradients in phosphorus and vegetation biomass for Sweden and Denmark. DOI: 10.6084/m9.figshare.5614588; Potter, P., N. Ramankutty, E.M. Bennett, and S.D. Donner. 2010. Characterizing the Spatial Patterns of Global Fertilizer Application and Manure Production. Earth Interactions 14 (2): 1-22. http://dx.doi.org/10.1175/2009EI288.1; and Ruesch, Aaron, and Holly K. Gibbs. 2008. New IPCC Tier-1 Global Biomass Carbon Map For the Year 2000. Available online from the Carbon Dioxide Information Analysis Center <i>[</i><i>http://cdiac.ess-dive.lbl.gov</i><i>]</i>, Oak Ridge National Laboratory, Oak Ridge, Tennessee.
DOI: 10.6084/m9.figshare.5614600.v1
title: Awac data

description: Data generate by AWAC Nortek at Xcalak Reefs<br>
DOI: 10.6084/m9.figshare.5614585
title: yolo2-pyTorch_result

description: 파이토치를 이용한 요로2 구현 결과, 퍼듀대 인근 테스트 <br>
DOI: 10.6084/m9.figshare.5614585.v1
title: yolo2-pyTorch_result

description: 파이토치를 이용한 요로2 구현 결과, 퍼듀대 인근 테스트 <br>
DOI: 10.6084/m9.figshare.5614564
title: An Alternative Integral Representation of the Dirac Delta

description: A critical review of the integral representation of the Dirac delta distribution regarding the strong requirements imposed on test functions and their disadvantages for physical theories, accompanied by a new approach to the beast and a newly proposed integral representation that fulfills the sifting property for any continuous function, as most physically relevant fields are.
DOI: 10.6084/m9.figshare.5614588.v1
title: Latitudinal gradients in phosphorus and vegetation biomass for Sweden and Denmark

description: These data were combined for a figure depicting strong latitudinal gradients in phosphorus fertilizer and manure application and aboveground vegetation biomass for Sweden and Denmark. An intersection between human and natural gradients can lead to cross-regional contrasts in energy and mass transfer to lakes and explain the presence of thresholds in lake C cycling. Data were averaged within latitudinal bands for the extent of Sweden and Denmark and plotted as splines to emphasize the overall patterns. Data sources are Cheruvelil et al. 2017a, Potter et al. 2010, and Reusch et al. 2008. <br>
DOI: 10.6084/m9.figshare.5613055
title: LaTeX source for Insect Collectors' Code PocketMod

description: LaTeX source code for Insect Collectors' Code PocketMod, available to modify and reuse.
DOI: 10.25373/ctsnet.5613001
title: Five-on-a-Dice Port Technique for Robot-Assisted Right Upper Lobectomy for Hilar Lung Cancer

description: This video demonstrates the case of a 54-year-old woman with a 3.5 cm hilar mass abutting the main pulmonary artery, and located between the posterior ascending and superior segmental arteries.<br>Learn more at: https://www.ctsnet.org/article/five-dice-port-technique-robot-assisted-right-upper-lobectomy-hilar-lung-cancer<br><br>
DOI: 10.6084/m9.figshare.5613016
title: Data from: Habitat modelling of tracking data from multiple marine predators identifies important areas in the Southern Indian Ocean

description: This fileset contains supporting data for the paper:<br><b>Habitat modelling of tracking data from multiple marine predators identifies important areas in the Southern Indian Ocean</b><br><i>Diversity and Distributions</i><br>DOI: 10.1111/ddi.12702<br><br>The fileset contains data used to model the habitat preference of 14 marine predator species from the Prince Edward Islands, Southern Indian Ocean.<br>The files contain real and simulated location estimates, as well as environmental covariates.<br>Further details of the file contents are found in README.txt and in the paper.
DOI: 10.6084/m9.figshare.5613055.v1
title: LaTeX source for Insect Collectors' Code PocketMod

description: LaTeX source code for Insect Collectors' Code PocketMod, available to modify and reuse.
DOI: 10.6084/m9.figshare.5612968
title: Institutions studying lake carbon cycling

description: FROM: Seekel, D., J.-F. Lapierre, and K.S. Cheruvelil. 2018. A geography of lake carbon cycling. Forthcoming in Limnology & Oceanography Letters.These data were created to map where (at what institutions) lake carbon cycling research has been conducted globally during the past 15 years. No of pubs are records taken from Web of Science during Summer 2017 = number of hits or number of publications that had the words lake carbon cycling in title and abstract for each institution. Search terms = “lake” and “carbon” and “cycle” in “limnology” and “ecology”.
DOI: 10.6084/m9.figshare.5612968.v1
title: Institutions studying lake carbon cycling

description: These data were created to map where (at what institutions) lake carbon cycling research has been conducted globally during the past 15 years. No of pubs are records taken from Web of Science during Summer 2017 = number of hits or number of publications that had the words lake carbon cycling in title and abstract for each institution. Search terms = “lake” and “carbon” and “cycle” in “limnology” and “ecology”. The paper that includes a map of these data is under review currently at a peer-review journal.
DOI: 10.6084/m9.figshare.5612746
title: Subject Data.xlsx from Does dynamic stability govern propulsive force generation in human walking?

description: File contains individual subject time series of sacral marker position data, captured at 100 Hz and reported in mm. Those time series for Experiments 1 and 2 are organized under separate tabs. Each tab is organized by headers representing different experimental conditions. Under each condition header, X, Y, and Z correspond to the medio-lateral, anterior-posterior, and vertical directions, respectively.
DOI: 10.6084/m9.figshare.5612743
title: Stomach Sequences from Jellyfish on the menu: mtDNA assay reveals scyphozoan predation in the Irish Sea

description: Sequences, obtained from stomach samples, used to identify the species of consumed cnidarian.
DOI: 10.6084/m9.figshare.5612734
title: Sample details from Jellyfish on the menu: mtDNA assay reveals scyphozoan predation in the Irish Sea

description: Details of stomach condition, length, year, and if cnidarian mtDNA was detected for individuals tested.
DOI: 10.6084/m9.figshare.5612743.v1
title: Stomach Sequences from Jellyfish on the menu: mtDNA assay reveals scyphozoan predation in the Irish Sea

description: Sequences, obtained from stomach samples, used to identify the species of consumed cnidarian.
DOI: 10.6084/m9.figshare.5612746.v1
title: Subject Data.xlsx from Does dynamic stability govern propulsive force generation in human walking?

description: File contains individual subject time series of sacral marker position data, captured at 100 Hz and reported in mm. Those time series for Experiments 1 and 2 are organized under separate tabs. Each tab is organized by headers representing different experimental conditions. Under each condition header, X, Y, and Z correspond to the medio-lateral, anterior-posterior, and vertical directions, respectively.
DOI: 10.6084/m9.figshare.5612734.v1
title: Sample details from Jellyfish on the menu: mtDNA assay reveals scyphozoan predation in the Irish Sea

description: Details of stomach condition, length, year, and if cnidarian mtDNA was detected for individuals tested.
DOI: 10.6084/m9.figshare.5612779.v3
title: 20171207_UTINAM.pdf

description: Presentation at Utinam (Universitè de Franche-Comtè) on 7th December 2017
DOI: 10.6084/m9.figshare.5612680
title: Response of rumen bacterial diversity and fermentation parameters in beef cattle to diets containing supplemental daidzein

description: An experiment was conducted to determine the effects of soy isoflavone daidzein on ruminal fermentation, microbial protein synthesis and rumen bacterial community in beef cattle. Six rumen-cannulated adult beef cattle were assigned to three blocks according to similar body weight in a randomised block design, with two cattle each block. Each block randomly received one of the two dietary treatments: control (basal concentrate) and daidzein (supplementation with 500 mg daidzein/kg basal concentrate). High-throughput sequencing data showed that supplemental daidzein increased the relative abundance of bacteria belonging to phylum Bacteroidetes (<i>p</i> = .050), but reduced and tended to reduce the relative abundance of phylum Spirochaetae (<i>p</i> = .030) and Firmicutes (<i>p</i> = .080). At the genus level, the relative abundance of <i>Prevotella</i> (<i>p</i> = .036), <i>RC9_gut_group</i> (<i>p</i> = .019), <i>Succinivibrio</i> (<i>p</i> = .093) and <i>Ruminobacter</i> (<i>p</i> = .085) were increased or tended to be increased by daidzein supplementation. However, supplemental daidzein reduced or tended to reduce some uncultured and unclassified bacteria genus belonging to <i>Ruminococcaceae</i> (<i>p</i> = .028), <i>Prevotellaceae</i> (<i>p</i> = .088) and <i>Lachnospiraceae</i> (<i>p</i> = .068). The ruminal pH (<i>p</i> = .023) and ammonia-N (<i>p</i> = .031) concentration were lower in the daidzein group than in the control group, but the daidzein group tended to have greater ruminal total VFA (<i>p</i> = .063) concentration. Supplemental daidzein increased urinary excretion of allantoin (<i>p</i> = .005) and total purine derivatives (<i>p</i> = .007). Current results suggest that supplemental daidzein can affect ruminal fermentation by changing ruminal microbial community, increase the production of VFA and enhance microbial protein synthesis in the rumen, showing the potential of daidzein for improving ruminal fermentation in beef cattle.
DOI: 10.6084/m9.figshare.5612086
title: Supplementary Material for: Survival Outcome of Intermediate-Grade Salivary Gland Carcinoma

description: <b><i>Objective:</i></b> Histological grade is the most important factor for defining treatment strategies and predicting prognosis for salivary gland carcinoma (SGC). We examined factors affecting long-term recurrence and survival among intermediate-grade SGC (IGSGC) patients to define optimal treatment modalities and outcomes. <b><i>Methods:</i></b> We reviewed the clinical and pathological data on 108 IGSGC patients who underwent definitive surgery with or without postoperative radiotherapy. We compared treatment outcomes by treatment strategies such as surgical extent for the primary tumor, neck dissection, or postoperative radiotherapy. <b><i>Results:</i></b> During a 103-month median follow-up, local, regional, and distant recurrences were detected in 14 (13.0%), 3 (2.8%), and 21 (19.4%) patients, respectively. The 10-year locoregional control (LRC), distant metastasis-free survival (DMFS), and overall survival (OS) rates were 83.1, 76.0, and 80.1%, respectively. Multivariate analyses identified a nonparotid primary site as an independent prognostic factor for LRC (<i>p</i> = 0.018). Adenoid cystic carcinoma and a positive pN classification were significantly unfavorable prognostic factors for DMFS (<i>p</i> = 0.025 and <i>p</i> = 0.030, respectively); overall advanced stage was an independent prognostic factor for OS (<i>p</i> = 0.020). Surgical extent, elective neck dissection, and postoperative adjuvant radiotherapy did not significantly affect treatment outcomes. <b><i>Conclusion:</i></b> Patients with early-stage IGSGC of parotid origin can achieve favorable treatment outcomes with conservative surgery alone.