cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5441/001/1.5nd951n8/2
title: Satellite telemetry of Blue-throated Macaws in Barba Azul Nature Reserve Bolivia-reference-data

description: Davenport LC, Boorsma T, Carrara L, Antas PTZ, Faria L, Brightsmith DJ, Herzog SK, Soria-Auza RW, Hennessey AB. 2021. Satellite telemetry of Blue-throated Macaws in Barba Azul Nature Reserve (Beni, Bolivia) reveals likely breeding areas. Diversity. 13(11):564. doi:10.3390/d13110564
description: The Blue-throated Macaw (Ara glaucogularis) is a Critically Endangered species endemic to the Llanos de Moxos ecosystem of Beni, Bolivia. To aid conservation of the northwestern population that utilizes the Barba Azul Nature Reserve during the non-breeding season, we set out to learn the sites where these birds breed using satellite telemetry. We describe preliminary tests conducted on captive birds (at Loro Parque Foundation, Tenerife, Spain) that resulted in choosing Geotrak Parrot Collars, a metal, battery-operated unit that provides data through the Argos satellite system. In September 2019, we tagged three birds in Barba Azul with Geotrak collars, and received migration data for two birds, until battery depletion in November and December 2019. Our two migrant birds were tracked leaving Barba Azul on the same date (27 September), but departed in divergent directions (approximately 90 degrees in separation). They settled in two sites approximately 50–100 km from Barba Azul. Some details of the work are restricted out of conservation concern as the species still faces poaching pressures. Knowing their likely breeding grounds, reserve managers conducted site visits to where the birds were tracked, resulting in the discovery of breeding birds, although no birds still carrying a transmitter were seen then. A single individual still carrying its collar was spotted 13 August 2021 at Barba Azul. The work suggests that the Blue-throated Macaws of Barba Azul use breeding sites that are scattered across the Llanos de Moxos region, although within the recognized boundaries of the northwestern subpopulation. We conclude that the use of satellite collars is a feasible option for research with the species and could provide further conservation insights.
DOI: 10.6084/m9.figshare.17014513.v1
title: Linear time dynamic programming for computing breakpoints in the regularization path of models selected from a finite set

description: Many learning algorithms are formulated in terms of finding model parameters which minimize a data-fitting loss function plus a regularizer. When the regularizer involves the ℓ0 pseudo-norm, the resulting regularization path consists of a finite set of models. The fastest existing algorithm for computing the breakpoints in the regularization path is quadratic in the number of models, so it scales poorly to high dimensional problems. We provide new formal proofs that a dynamic programming algorithm can be used to compute the breakpoints in linear time. Our empirical results include analysis of the proposed algorithm in the context of various learning problems (regression, changepoint detection, clustering, matrix factorization). We use a detailed analysis of changepoint detection problems to demonstrate the improved accuracy and speed of our approach relative to grid search and a previous quadratic time algorithm.
DOI: 10.5281/zenodo.5703312
title: A low glycemic index Mediterranean diet reduced the Dietary Inflammatory Index scores in patients with breast cancer

description: <strong>ABSTRACT (word count 263)</strong> <strong>Background:</strong> Inflammation is directly associated with breast cancer (BC) incidence and mortality, dietary inflammatory index (DII®) and dietary glycemic index (GI) scores, and inversely associated with Mediterranean diet (MD). We therefore investigated the DII in women diagnosed with BC, randomized in a trial to follow either a MD diet or MD with low-GI (MDLGI) carbohydrates. <strong>Methods:</strong> Data were derived from 223 women living in Italy, mean age of 59±9.3 years, within 12 months of BC surgery (stages I-III). Dietary data from 7-day food records, the Mediterranean Dietary Assessment Screener (MEDAS) and serum high sensitivity C-reactive protein (hsCRP) levels were collected at baseline and after 12 months of treatment. Student’s t-test, two-way ANOVA, Spearman correlations, Pearson correlation and regression analyses were conducted. <strong>Results: </strong>Adherence to the Mediterranean diet increased after 12-months of treatment in both MD and MDLGI groups, MEDAS from 8.1 to 9.1 and from 8.3 to 9.9, respectively (p&lt;0.001); dietary GI decreased from 55.5 to 52.4 and from 55.1 to 47.6, respectively (p&lt;0.001); and DII decreased from 2.08 to 1.49 and from 1.60 to 0.81, respectively (p&lt;0.001). No treatment difference in hsCRP levels and no significant correlation between CRP levels and DII scores were found. The analysis of variance suggested that low GI may independently contribute to lowering the DII (beta-coefficient 0.08, p&lt;0.001). <strong>Conclusions: </strong>The DII decreased after 12 months (4 sessions) of dietary counseling on a traditional MD. This effect was particularly stronger when carbohydrates were of low GI. These results are relevant given that lowering the inflammatory potential of the diet may have implications in cancer prognosis and overall survival.
DOI: 10.5281/zenodo.5703311
title: A low glycemic index Mediterranean diet reduced the Dietary Inflammatory Index scores in patients with breast cancer

description: <strong>ABSTRACT (word count 263)</strong> <strong>Background:</strong> Inflammation is directly associated with breast cancer (BC) incidence and mortality, dietary inflammatory index (DII®) and dietary glycemic index (GI) scores, and inversely associated with Mediterranean diet (MD). We therefore investigated the DII in women diagnosed with BC, randomized in a trial to follow either a MD diet or MD with low-GI (MDLGI) carbohydrates. <strong>Methods:</strong> Data were derived from 223 women living in Italy, mean age of 59±9.3 years, within 12 months of BC surgery (stages I-III). Dietary data from 7-day food records, the Mediterranean Dietary Assessment Screener (MEDAS) and serum high sensitivity C-reactive protein (hsCRP) levels were collected at baseline and after 12 months of treatment. Student’s t-test, two-way ANOVA, Spearman correlations, Pearson correlation and regression analyses were conducted. <strong>Results: </strong>Adherence to the Mediterranean diet increased after 12-months of treatment in both MD and MDLGI groups, MEDAS from 8.1 to 9.1 and from 8.3 to 9.9, respectively (p&lt;0.001); dietary GI decreased from 55.5 to 52.4 and from 55.1 to 47.6, respectively (p&lt;0.001); and DII decreased from 2.08 to 1.49 and from 1.60 to 0.81, respectively (p&lt;0.001). No treatment difference in hsCRP levels and no significant correlation between CRP levels and DII scores were found. The analysis of variance suggested that low GI may independently contribute to lowering the DII (beta-coefficient 0.08, p&lt;0.001). <strong>Conclusions: </strong>The DII decreased after 12 months (4 sessions) of dietary counseling on a traditional MD. This effect was particularly stronger when carbohydrates were of low GI. These results are relevant given that lowering the inflammatory potential of the diet may have implications in cancer prognosis and overall survival.
DOI: 10.6084/m9.figshare.17014022
title: Dataset: Water diversion and pollution interactively shape freshwater food webs through bottom-up mechanisms

description: Datasets used to assess effects of water diversion and pollution on stream food webs by SIA
DOI: 10.6084/m9.figshare.17014616
title: Supplemental Table_October 2021.pdf

description: Supplemental Table
DOI: 10.6084/m9.figshare.17014616.v1
title: Supplemental Table_October 2021.pdf

description: Supplemental Table
DOI: 10.5517/ccdc.csd.cc271n65
title: CCDC 2057166: Experimental Crystal Structure Determination

description: Related Article: V.P. Kirin, A.G. Demkin, T.S. Sukhikh, T.N. Ilyicheva, V.A. Maksakov|2022|J.Mol.Struct.|1250|131486|doi:10.1016/j.molstruc.2021.131486
DOI: 10.5517/ccdc.csd.cc2788d6
title: CCDC 2063527: Experimental Crystal Structure Determination

description: Related Article: Saigal, Mohammad Khizr, Subash C. Sahoo, Md. Musawwer Khan|2022|J.Mol.Struct.|1250|131655|doi:10.1016/j.molstruc.2021.131655
DOI: 10.5517/ccdc.csd.cc28fjhr
title: CCDC 2098374: Experimental Crystal Structure Determination

description: Related Article: Jiayin Zhang, Haibin Qu, Lingyu Wang, Zhonghua Li, Yumin Liu, Li Xu, Songgu Wu, Junbo Gong|2021|Cryst.Growth Des.|21|6385|doi:10.1021/acs.cgd.1c00855
DOI: 10.5517/ccdc.csd.cc28fjkt
title: CCDC 2098376: Experimental Crystal Structure Determination

description: Related Article: Jiayin Zhang, Haibin Qu, Lingyu Wang, Zhonghua Li, Yumin Liu, Li Xu, Songgu Wu, Junbo Gong|2021|Cryst.Growth Des.|21|6385|doi:10.1021/acs.cgd.1c00855
DOI: 10.5517/ccdc.csd.cc28fjmw
title: CCDC 2098378: Experimental Crystal Structure Determination

description: Related Article: Jiayin Zhang, Haibin Qu, Lingyu Wang, Zhonghua Li, Yumin Liu, Li Xu, Songgu Wu, Junbo Gong|2021|Cryst.Growth Des.|21|6385|doi:10.1021/acs.cgd.1c00855
DOI: 10.5517/ccdc.csd.cc28fjpy
title: CCDC 2098380: Experimental Crystal Structure Determination

description: Related Article: Jiayin Zhang, Haibin Qu, Lingyu Wang, Zhonghua Li, Yumin Liu, Li Xu, Songgu Wu, Junbo Gong|2021|Cryst.Growth Des.|21|6385|doi:10.1021/acs.cgd.1c00855
DOI: 10.25345/c5gw16
title: MassIVE MSV000088381 - Mapping the mTORC2 Protein Interactome in Living Cells by Endogenous RICTOR Proximity Labeling
title: The mammalian Target of Rapamycin (mTOR) kinase complex 2 (mTORC2) is activated upon growth factor signaling through a PI3K-dependent process. Some proteins that cause mTORC2 signaling to become activated or inactivated are known, the detailed steps of activation are still unknown. While growth factor dependent mTORC2 activation is thought to occur at or near the plasma membrane, mTORC2 also localizes to other intracellular hubs, which may have alternative functions other than signaling to AKT and other AGC-family kinases. This study identifies the mTORC2-dependent interactome in live cells using BioID proximity labeling and characterizes the targeted interactors into groups based on localization, potential as an mTOR substrate, and function. As a proof of concept, 80 of the 215 interactors found in the study have previous connections to either mTORC2 components or signaling to mTORC2's most well-defined substrate AKT (S473). This study determines that RICTOR and other mTORC2 components localize to the nucleus in several cell types, where it may play roles in RNA splicing function and DNA damage repair. Herein, two mTORC2 interacting enzymes are biochemically validated, an E2 neddylation enzyme UBE2M and the ARF1 GTPase. ARF1 inhibits mTORC2 activation to its substrates, particularly when it is in a GTP-bound state. This finding is exciting because mTORC2 regulation by GTPases is a field just beginning to be uncovered.
DOI: 10.5281/zenodo.5703342
title: msd-errors - Data for diffusion coefficient and offset figures

description: Data for a figure that shows the distributions of the mean and varance of the diffusion coefficient and offset that are found from the analysis of 1024 unique random walks using kinisi. This is performed for both a truely random walk and a temporally anti-correlated random walk.<br><br>Created using showyourwork from this GitHub repo.
DOI: 10.5066/f7m906pr
title: Brook Trout Occupancy Modeling in 2012 for the Southern Portion of Their Range (PA and south): ArcGIS Map Package
DOI: 10.5523/bris.20egxk888rljr25vst4u3nhnyz
title: FABDEM Vietnam

description: A building and forest removed Digital Elevation Model called FABDEM for Vietnam
DOI: 10.5281/zenodo.5703273
title: COVID-19 Seroprevalence in Ontario; March 27 - October 30, 2020

description: Results of population-based age stratified seroepidemiological investigation in Ontario, Canada
DOI: 10.5281/zenodo.5703272
title: COVID-19 Seroprevalence in Ontario; March 27 - October 30, 2020

description: Results of population-based age stratified seroepidemiological investigation in Ontario, Canada
DOI: 10.5281/zenodo.5703351
title: Self-excited Contact Resonance Operation of a Tactile Piezoresistive Cantilever Microprobe with Diamond Tip (Data)

description: Raw data and figures used for the article "Self-excited Contact Resonance Operation of a Tactile Piezoresistive Cantilever Microprobe with Diamond Tip", published in the proceedings of Sensor and Measurement Science International 2021; 2021-05-03 - 2021-05-06; digital.
description: This project has received funding from the EMPIR program co-financed by the Participating States and from the European Union's Horizon 2020 research and innovation program under no. 17IND05 MicroProbes.
DOI: 10.5281/zenodo.5703350
title: Self-excited Contact Resonance Operation of a Tactile Piezoresistive Cantilever Microprobe with Diamond Tip (Data)

description: Raw data and figures used for the article "Self-excited Contact Resonance Operation of a Tactile Piezoresistive Cantilever Microprobe with Diamond Tip", published in the proceedings of Sensor and Measurement Science International 2021; 2021-05-03 - 2021-05-06; digital.
description: This project has received funding from the EMPIR program co-financed by the Participating States and from the European Union's Horizon 2020 research and innovation program under no. 17IND05 MicroProbes.
DOI: 10.5281/zenodo.5703345
title: Seroprevalence of COVID-19 in Papua New Guinea

description: Results of population-based age stratified seroepidemiological investigation in Papua New Guinea
DOI: 10.5281/zenodo.5703307
title: Age-stratified sero-surveillance for SARS-CoV-2 infections in four cities in Thailand

description: Results of population-based age stratified seroepidemiological investigation in Thailand
DOI: 10.5281/zenodo.5703289
title: A Multi-Centric Novel Coronavirus (COVID-19) Population-Based Age-Stratified Sero-Epidemiological Study (In Urban, Rural and Tribal Communities at Selected Centers in India: A Prospective Study)

description: Results of population-based age stratified seroepidemiological investigation in India
DOI: 10.5281/zenodo.5703344
title: Seroprevalence of COVID-19 in Papua New Guinea

description: Results of population-based age stratified seroepidemiological investigation in Papua New Guinea
DOI: 10.5281/zenodo.5703306
title: Age-stratified sero-surveillance for SARS-CoV-2 infections in four cities in Thailand

description: Results of population-based age stratified seroepidemiological investigation in Thailand
DOI: 10.5281/zenodo.5703288
title: A Multi-Centric Novel Coronavirus (COVID-19) Population-Based Age-Stratified Sero-Epidemiological Study (In Urban, Rural and Tribal Communities at Selected Centers in India: A Prospective Study)

description: Results of population-based age stratified seroepidemiological investigation in India
DOI: 10.5281/zenodo.5701494
title: FW306_06

description: Reads, assembly and bins for FW306_06
DOI: 10.5281/zenodo.5701493
title: FW306_06

description: Reads, assembly and bins for FW306_06
DOI: 10.5281/zenodo.5703371
title: Impacts of gut microbial depletion on tadpole thermal physiology

description: The goal of our study was to determine if depletion of gut microbiome diversity would alter host thermal tolerance in a vertebrate ectotherm. We raised laboratory-reared tadpoles of the green frog in two microbial colonization treatments: colonized and depleted. Colonized tadpoles were raised in natural pond water to provide a rich source of microbiota for colonization of the gut, and depleted tadpoles were raised in autoclaved pond water to reduce this source of microbiota. We then performed a suite of experiments to test for differences in thermal physiology between groups. In our first experiment we tested tadpole acute thermal tolerance (critical thermal minimum and maximum). We verified our results in a second set of tadpoles and then tested tadpole survival under heat stress and thermal sensitivity of locomotion performance. Lastly, we tested for differences in physiological traits at lower levels of biological organization to identify putative mechanisms behind our results including mitochondrial enzyme activities, phospholipid membrane composition, and whole-organism metabolic rate.
DOI: 10.5281/zenodo.4894887
title: Impacts of gut microbial depletion on tadpole thermal physiology

description: The goal of our study was to determine if depletion of gut microbiome diversity would alter host thermal tolerance in a vertebrate ectotherm. We raised laboratory-reared tadpoles of the green frog in two microbial colonization treatments: colonized and depleted. Colonized tadpoles were raised in natural pond water to provide a rich source of microbiota for colonization of the gut, and depleted tadpoles were raised in autoclaved pond water to reduce this source of microbiota. We then performed a suite of experiments to test for differences in thermal physiology between groups. In our first experiment we tested tadpole acute thermal tolerance (critical thermal minimum and maximum). We verified our results in a second set of tadpoles and then tested tadpole survival under heat stress and thermal sensitivity of locomotion performance. Lastly, we tested for differences in physiological traits at lower levels of biological organization to identify putative mechanisms behind our results including mitochondrial enzyme activities, phospholipid membrane composition, and whole-organism metabolic rate.
DOI: 10.5281/zenodo.4772509
title: PLANMAP - Deliverable D4.2 - Mercury/H05-Hokusai quadrangle spectral parameters maps

description: Spectral parameters maps of H05-Hokusai quadrangle on Mercury at 450 m/pixel derived by MESSENGER/MDIS-WAC dataset available at https://ode.rsl.wustl.edu/mercury/ <br>
description: This work is funded by the European Union's Horizon 2020 research grant agreement No 776276-PLANMAP (https://planmap.eu/) and by the Italian Space Agency (ASI) within the SIMBIO-SYS project (ASI-INAF agreement 2017-47-H.0). This work is based on MESSENGER/MDIS-WAC data publicly available at https://ode.rsl.wustl.edu/mercury/.
DOI: 10.5281/zenodo.4772508
title: PLANMAP - Deliverable D4.2 - Mercury/H05-Hokusai quadrangle spectral parameters maps

description: Spectral parameters maps of H05-Hokusai quadrangle on Mercury at 450 m/pixel derived by MESSENGER/MDIS-WAC dataset available at https://ode.rsl.wustl.edu/mercury/ <br>
description: This work is funded by the European Union's Horizon 2020 research grant agreement No 776276-PLANMAP (https://planmap.eu/) and by the Italian Space Agency (ASI) within the SIMBIO-SYS project (ASI-INAF agreement 2017-47-H.0). This work is based on MESSENGER/MDIS-WAC data publicly available at https://ode.rsl.wustl.edu/mercury/.
DOI: 10.5281/zenodo.4772273
title: PLANMAP - Deliverable D4.4 - Mercury/H05-Hokusai quadrangle spectral units map

description: Spectral units map of H05-Hokusai quadrangle on Mercury
description: This work is funded by the European Union's Horizon 2020 research grant agreement No 776276-PLANMAP (https://planmap.eu/) and by the Italian Space Agency (ASI) within the SIMBIO-SYS project (ASI-INAF agreement 2017-47-H.0). This work is based on MESSENGER/MDIS-WAC data publicly available at https://ode.rsl.wustl.edu/mercury/.
DOI: 10.5066/f7ks6pk0
title: Official Recognized Boundary of Driftless Area Restoration Effort, 2013
DOI: 10.5066/f7c53hwr
title: Multistate Aquatic Resources Information System (MARIS) published 20131201 - North Carolina fish sampling records 1990-2008
DOI: 10.15784/601485
title: LMG13-11 JKC-1 Paleoceanographic data

description: This data set contains an age vs depth model and measurements of magnetic susceptibility, benthic foraminifera Bulimina aculeata d18O and d13C, bulk sediment GDGT data, and diatom assemblage data from USAP LMG13-11 JKC-1 sediment core (0-100 cm) archived at the Oregon State University ACC repository. All stable isotope and GDGT measurements were made at the University of South Florida College of Marine Science. Diatom assemblages were counted at Colgate University. The data set includes all replicate measurements. Details of the entire data set and all relevant methods are provided in Browne et al (submitted, 2021)
DOI: 10.5066/f7d50k03
title: Multistate Aquatic Resources Information System (MARIS) published 20131201 - Louisiana fish sampling records 1991-2011
DOI: 10.5066/f7ht2mb7
title: Multistate Aquatic Resources Information System (MARIS) published 20131201 - Kentucky fish sampling records 2000-2012
DOI: 10.5066/f7kp8052
title: Multistate Aquatic Resources Information System (MARIS) published 20131201 - West Virginia fish sampling records 1997-2010
DOI: 10.5066/f7mk69x5
title: Multistate Aquatic Resources Information System (MARIS) published 20131201 - New Jersey fish sampling records 1950-2008
DOI: 10.5066/f7nk3c1h
title: Multistate Aquatic Resources Information System (MARIS) published 20131201 - Indiana fish sampling records
DOI: 10.25345/c5bz9p
title: MassIVE MSV000088382 - Protein Posttranslational Signatures Identified in COVID-19 Patient Plasma
title: Severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) is a highly contagious virus of the coronavirus family that causes coronavirus disease-19 (COVID-19) in humans and a number of animal species. COVID-19 has rapidly propagated in the world in the past 2 years, causing a global pandemic. Here, we performed proteomic analysis of plasma samples from COVID-19 patients compared to healthy control donors in an exploratory study to gain insights into protein-level changes in the patients caused by SARS-CoV-2 infection and to identify potential proteomic and posttranslational signatures of this disease. Our results suggest a global change in protein processing and regulation that occurs in response to SARS-CoV-2, and the existence of a posttranslational COVID-19 signature that includes an elevation in threonine phosphorylation, a change in glycosylation, and a decrease in arginylation, an emerging posttranslational modification not previously implicated in infectious disease. This study provides a resource for COVID-19 researchers and, longer term, will inform our understanding of this disease and its treatment.
DOI: 10.5066/f7f18wrn
title: Multistate Aquatic Resources Information System (MARIS) published 20131201 - Alabama fish sampling records 1953-2006
DOI: 10.34740/kaggle/dsv/2816251
title: Printed Digits Dataset
DOI: 10.5517/ccdc.csd.cc25288t
title: CCDC 1998175: Experimental Crystal Structure Determination

description: Related Article: Vanessa Koch, Martin Nieger, Stefan Bräse|2020|Org.Chem.Front.|7|2670|doi:10.1039/D0QO00269K
DOI: 10.5517/ccdc.csd.cc259ydv
title: CCDC 2005557: Experimental Crystal Structure Determination

description: Related Article: Christian F. Otto, Colin Herzberger, Ming Liu, Jan C. Namyslo, Martin Nieger, Tyll Freese, Felix Lederle, Eike G. Hübner, Andreas Schmidt|2020|Tetrahedron|76|131627|doi:10.1016/j.tet.2020.131627
DOI: 10.5517/ccdc.csd.cc25gsm2
title: CCDC 2010214: Experimental Crystal Structure Determination

description: Related Article: Debashis Mallick, Mukul Bikash Maity, Chandana Sen, Basudeb Dutta, Suman Kundu, Chittaranjan Sinha|2020|J.Indian Chem.Soc.|97|1478|
DOI: 10.5517/ccdc.csd.cc28k3cb
title: CCDC 2101811: Experimental Crystal Structure Determination

description: Related Article: Diksha Bhardwaj, Ruby Singh|2021|Tetrahedron Lett.|85|153491|doi:10.1016/j.tetlet.2021.153491
DOI: 10.5517/ccdc.csd.cc28l9ry
title: CCDC 2102970: Experimental Crystal Structure Determination

description: Related Article: Oleg К. Farat, Nikolai V. Smetanin, Svetlana A. Varenichenko, Mariia B. Kaidash, Ekaterina V. Zaliznaya, Victor I. Markov|2021|Tetrahedron Lett.|85|153464|doi:10.1016/j.tetlet.2021.153464
DOI: 10.5517/ccdc.csd.cc28lswk
title: CCDC 2103439: Experimental Crystal Structure Determination

description: Related Article: Pampa Maity, Piyali Sarkar, Chhanda Mukhopadhyay|2021|Tetrahedron Lett.|85|153479|doi:10.1016/j.tetlet.2021.153479