cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12262334.v1
title: Additional file 1 of Integrated analysis of genome-wide miRNAs and targeted gene expression in esophageal squamous cell carcinoma (ESCC) and relation to prognosis

description: Additional file 1: Table S1. 260 miRNAs with tumor & normal tissue expression in ≥50% of cases.
DOI: 10.6084/m9.figshare.12262352
title: Additional file 4 of Integrated analysis of genome-wide miRNAs and targeted gene expression in esophageal squamous cell carcinoma (ESCC) and relation to prognosis

description: Additional file 4: Table S3. Gene/probe expressions correlated with miR-203
DOI: 10.6084/m9.figshare.12262334
title: Additional file 1 of Integrated analysis of genome-wide miRNAs and targeted gene expression in esophageal squamous cell carcinoma (ESCC) and relation to prognosis

description: Additional file 1: Table S1. 260 miRNAs with tumor & normal tissue expression in ≥50% of cases.
DOI: 10.6084/m9.figshare.12262340
title: Additional file 2 of Integrated analysis of genome-wide miRNAs and targeted gene expression in esophageal squamous cell carcinoma (ESCC) and relation to prognosis

description: Additional file 2: Table S2. Demographic and clinical characteristics of ESCC cases (n = 113).
DOI: 10.6084/m9.figshare.12262367
title: Additional file 7 of Integrated analysis of genome-wide miRNAs and targeted gene expression in esophageal squamous cell carcinoma (ESCC) and relation to prognosis

description: Additional file 7: Table S6. Survival by mRNA expression for 395 probes (in 195 genes) correlated with miRs.
DOI: 10.6084/m9.figshare.12262340.v1
title: Additional file 2 of Integrated analysis of genome-wide miRNAs and targeted gene expression in esophageal squamous cell carcinoma (ESCC) and relation to prognosis

description: Additional file 2: Table S2. Demographic and clinical characteristics of ESCC cases (n = 113).
DOI: 10.6084/m9.figshare.12262355.v1
title: Additional file 5 of Integrated analysis of genome-wide miRNAs and targeted gene expression in esophageal squamous cell carcinoma (ESCC) and relation to prognosis

description: Additional file 5: Table S4. Correlation of miRNA expression with clinical characteristics.
DOI: 10.6084/m9.figshare.12262361.v1
title: Additional file 6 of Integrated analysis of genome-wide miRNAs and targeted gene expression in esophageal squamous cell carcinoma (ESCC) and relation to prognosis

description: Additional file 6: Table S5. Survival by miR expression for 16 miRs correlated with gene expression (from Table 2).
DOI: 10.6084/m9.figshare.12262367.v1
title: Additional file 7 of Integrated analysis of genome-wide miRNAs and targeted gene expression in esophageal squamous cell carcinoma (ESCC) and relation to prognosis

description: Additional file 7: Table S6. Survival by mRNA expression for 395 probes (in 195 genes) correlated with miRs.
DOI: 10.6084/m9.figshare.13297527.v1
title: Additional file 10 of ZNF703 promotes tumor progression in ovarian cancer by interacting with HE4 and epigenetically regulating PEA15

description: Additional file 10. : Original Figs. 5a-e with each individual.
DOI: 10.6084/m9.figshare.14883936.v1
title: Circ_0006988 promotes the proliferation, metastasis and angiogenesis of non-small cell lung cancer cells by modulating miR-491-5p/MAP3K3 axis

description: Circular RNAs (circRNAs) are related to the progression of non-small cell lung cancer (NSCLC). However, the roles and mechanism of circ_0006988 are largely unknown. The levels of circ_0006988, Low-Density Lipoprotein Receptor Class A Domain Containing 3 (LDLRAD3), microRNA-491-5p (miR-491-5p), Mitogen-Activated Protein Kinase Kinase Kinase 3 (MAP3K3) were measured using quantitative real-time polymerase-chain reaction (qRT-PCR) and western blot assay. The characteristic of circ_0006988 was analyzed by RNase R assay and Actinomycin D assay. Functional analyses were processed by Cell Counting Kit-8 (CCK-8) assay, 5-ethynyl-2ʹ-deoxyuridine (EdU) assay, colony formation assay, flow cytometry analysis, transwell assay, wound-healing assay and tube formation assay. The interactions between circ_0006988 and miR-491-5p as well as miR-491-5p and MAP3K3 were analyzed by dual-luciferase reporter assay and RNA immunoprecipitation (RIP) assay. Murine xenograft model assay was processed to verify the function of circ_0006988 <i>in vivo</i>. Immunohistochemistry (IHC) assay was conducted to examine the level of Ki67. Circ_0006988 abundance was increased in NSCLC tissues and cells. Circ_0006988 silencing restrained NSCLC cell proliferation, migration, invasion and angiogenesis, and induced apoptosis. Circ_0006988 sponged miR-491-5p, which directly targeted MAP3K3. MiR-491-5p overexpression repressed NSCLC cell malignant behaviors. MiR-491-5p downregulation or MAP3K3 overexpression reversed the effect of circ_0006988 silencing on NSCLC cell progression. In addition, circ_0006988 knockdown reduced xenograft tumor growth. ssCirc_0006988 contributed to the development of NSCLC by miR-491-5p/MAP3K3 axis.
DOI: 10.6084/m9.figshare.19078209.v1
title: Bayesian basket trial design accounting for multiple cutoffs of an ambiguous biomarker

description: Basket trial designs enroll patients with different cancer types but the same genetic mutation or biomarker to evaluate the treatment effect of targeted therapy. However, the explicit biomarker sometimes may not be clearly identified. In this article, we propose a Bayesian basket trial design to account for multiple cutoffs of ambiguous biomarkers and select the optimal cutoff window to maximize the beneficial subpopulation. A two-stage design is proposed for the estimation. Secondly, we propose threshold calibration and sample size determination to facilitate the design. Extensive simulations are conducted to demonstrate the operating characteristics of the two estimation methods in terms of probability of correct selection of optimal cutoff window and probability of efficacy.
DOI: 10.25402/cer.14883852.v1
title: Supplementary Table 1. The constructed prediction equations from the multiple regression analyses.

description: Supplementary Table 1. The constructed prediction equations from the multiple regression analyses.
DOI: 10.6084/m9.figshare.19588950
title: Additional file 1 of Plastome structure, phylogenomics and evolution of plastid genes in Swertia (Gentianaceae) in the Qing-Tibetan Plateau

description: Additional file 1: Table S1. Basic information of 11 newly sequenced Swertia plastomes.
DOI: 10.6084/m9.figshare.14884084.v1
title: LncRNA HCP5 promotes malignant cell behaviors in esophageal squamous cell carcinoma via the PI3K/AKT/mTOR signaling

description: The role of lncRNA HCP5 in esophageal squamous cell carcinoma (ESCC) remains unknown despite its involvement in different malignancies. MTT assay, EdU assay, TUNEL assay, transwell assay, and sphere formation assay were conducted to reveal ESCC cell viability, proliferation, apoptosis, migration, invasion, and stemness characteristics. FISH and subcellular fraction assays were performed to reveal the subcellular location of HCP5 in ESCC cells. Luciferase reporter assay and RIP assay were conducted to explore the downstream axis of HCP5. Our findings revealed that HCP5 expression was at a higher level in ESCC tissues and cells compared to that in control tissues and cells. Additionally, HCP5 promoted ESCC cellular activities by promoting proliferation, migration, invasion ability and stemness characteristics of ESCC cells as well as suppressing cell apoptosis. Furthermore, we found that HCP5 bound with miR-139-5p to upregulate PDE4A via the competing endogenous RNA network in ESCC cells. Importantly, HCP5 was discovered to stimulate the PI3K/AKT/mTOR signaling by regulating the downstream target genes. Finally, rescue assays indicated that HCP5 promoted ESCC cell growth by activating the PDE4A-medaited PI3K/AKT/mTOR pathway. HCP5 promotes ESCC cellular development by modulating the miR-139-5p/PDE4A pathway and stimulating the PI3K/AKT/mTOR signaling pathway, which may be conducive for the improvement of ESCC treatment.
DOI: 10.6084/m9.figshare.16456779.v1
title: Additional file 1 of Durvalumab (MEDI 4736) in combination with extended neoadjuvant regimens in rectal cancer: a study protocol of a randomised phase II trial (PRIME-RT)

description: SPIRIT checklist.
DOI: 10.6084/m9.figshare.13297528.v1
title: Additional file 10 of Temporal salt stress-induced transcriptome alterations and regulatory mechanisms revealed by PacBio long-reads RNA sequencing in Gossypium hirsutum

description: Additional file 10: Table S8. Differentially expressed genes related to ion homeostasis.
DOI: 10.6084/m9.figshare.13297534.v1
title: Additional file 12 of Temporal salt stress-induced transcriptome alterations and regulatory mechanisms revealed by PacBio long-reads RNA sequencing in Gossypium hirsutum

description: Additional file 12: Table S10. Differentially expressed genes related to cell wall modification under salt stress.
DOI: 10.6084/m9.figshare.13297534
title: Additional file 12 of Temporal salt stress-induced transcriptome alterations and regulatory mechanisms revealed by PacBio long-reads RNA sequencing in Gossypium hirsutum

description: Additional file 12: Table S10. Differentially expressed genes related to cell wall modification under salt stress.
DOI: 10.17882/98753
title: Multi-site high resolution seabed topographical surveys (Maupiti Hoe, Niau, Socoa, Ars-en-Ré, Parlementia, Banneg)

description: The present dataset is based on a nine site study of fine seabed topography in intertidal zones. Four coral sites (Maupiti A, B and C and Niau islands) and five rocky sites (Ars en Ré, Socoa, Parlementia A and B and Banneg island) have been explored. The data has been gathered using on-foot GNSS RTK for all sites (Trimble R8/R8S and Leica sytems) except Banneg island, where aerial Lidar data from Litto3D program has been used. The horizontal resolution varies between 3.8 and 12cm allowing to describe a wide range of spatial scales (generally over 3 spectral decades). The data has been processed to explore the statistical and spectral metrics which can be used to characterize the architectural complexity of seabeds.
DOI: 10.6084/m9.figshare.24224797.v10
title: TPEB data

description: The formation of TPEB
DOI: 10.17909/sd84-nr38
title: Data from "Reconnaissance with JWST of the J-region Asymptotic Giant Branch in Distance Ladder Galaxies: From Irregular Luminosity Functions to Approximation of the Hubble Constant" by Li et al. 

description: Observations used to measure the J-region Asymptotic Giant Branch reference magnitudes in "Reconnaissance with JWST of the J-region Asymptotic Giant Branch in Distance Ladder Galaxies: From Irregular Luminosity Functions to Approximation of the Hubble Constant" by Siyang Li, Adam G. Riess, Stefano Casertano, Gagandeep S. Anand, Daniel M. Scolnic, Wenlong Yuan, Louise Breuval, and Caroline D. Huang.
DOI: 10.6084/m9.figshare.16456680
title: Additional file 2 of Applying low coverage whole genome sequencing to detect malignant ovarian mass

description: Additional file 2: Supplement Table 2. Comparison of laboratory index in validation group.
DOI: 10.6084/m9.figshare.16456680.v1
title: Additional file 2 of Applying low coverage whole genome sequencing to detect malignant ovarian mass

description: Additional file 2: Supplement Table 2. Comparison of laboratory index in validation group.
DOI: 10.6084/m9.figshare.16456683
title: Additional file 1 of Long non-coding RNAs HERH-1 and HERH-4 facilitate cyclin A2 expression and accelerate cell cycle progression in advanced hepatocellular carcinoma

description: Additional file 1.
DOI: 10.25384/sage.7035107.v1
title: Supplemental Material, JCR-17-0449.R2 - Are Liberal Governments More Cooperative? Voting Trends at the UN in Five Anglophone Democracies

description: Supplemental Material, JCR-17-0449.R2 for Are Liberal Governments More Cooperative? Voting Trends at the UN in Five Anglophone Democracies by Richard Hanania in Journal of Conflict Resolution
DOI: 10.25384/sage.7058759
title: Supplemental table4 - Supplemental material for Hypoxia-induced alterations in the lung ubiquitin proteasome system during pulmonary hypertension pathogenesis

description: Supplemental material, Supplemental table4 for Hypoxia-induced alterations in the lung ubiquitin proteasome system during pulmonary hypertension pathogenesis by Brandy E. Wade, Jingru Zhao, Jing Ma, C. Michael Hart and Roy L. Sutliff in Pulmonary Circulation
DOI: 10.25384/sage.7064366
title: naps_edmonton - Supplemental material for Eliminating systematic bias from case-crossover designs

description: Supplemental material, naps_edmonton for Eliminating systematic bias from case-crossover designs by Xiaoming Wang, Sukun Wang and Warren Kindzierski in Statistical Methods in Medical Research
DOI: 10.25384/sage.7064369
title: ncdc_edmonton - Supplemental material for Eliminating systematic bias from case-crossover designs

description: Supplemental material, ncdc_edmonton for Eliminating systematic bias from case-crossover designs by Xiaoming Wang, Sukun Wang and Warren Kindzierski in Statistical Methods in Medical Research
DOI: 10.25384/sage.7064369.v1
title: ncdc_edmonton - Supplemental material for Eliminating systematic bias from case-crossover designs

description: Supplemental material, ncdc_edmonton for Eliminating systematic bias from case-crossover designs by Xiaoming Wang, Sukun Wang and Warren Kindzierski in Statistical Methods in Medical Research
DOI: 10.25384/sage.7066442.v1
title: supplementary_table_28correlation_29 – Supplemental material for Disaggregating Between- and Within-Classroom Variation in Student Behavior: A Multilevel Factor Analysis of Teacher Ratings of Student Prosociality and Aggression

description: Supplemental material, supplementary_table_28correlation_29 for Disaggregating Between- and Within-Classroom Variation in Student Behavior: A Multilevel Factor Analysis of Teacher Ratings of Student Prosociality and Aggression by Aja Louise Murray, Ingrid Obsuth, Manuel Eisner and Denis Ribeaud in The Journal of Early Adolescence
DOI: 10.25384/sage.7038383.v1
title: WMR793935_Supplementary_material_Database_SI – Supplemental material for Intergovernmental panel on climate change’s landfill methane protocol: Reviewing 20 years of application

description: Supplemental material, WMR793935_Supplementary_material_Database_SI for Intergovernmental panel on climate change’s landfill methane protocol: Reviewing 20 years of application by Max J Krause in Waste Management & Research
DOI: 10.25384/sage.7140119
title: Replication_R_code – Supplemental material for Authoritarian Amendments: Legislative Institutions as Intraexecutive Constraints in Post-Soviet Russia

description: Supplemental material, Replication_R_code for Authoritarian Amendments: Legislative Institutions as Intraexecutive Constraints in Post-Soviet Russia by Ben Noble in Comparative Political Studies
DOI: 10.25384/sage.7149767
title: TUB_Supplementary_file_2 – Supplemental material for Sequence analysis of cell-free DNA derived from cultured human bone osteosarcoma (143B) cells

description: Supplemental material, TUB_Supplementary_file_2 for Sequence analysis of cell-free DNA derived from cultured human bone osteosarcoma (143B) cells by Abel Jacobus Bronkhorst, Johannes F Wentzel, Vida Ungerer, Dimetrie L Peters, Janine Aucamp, Etienne Pierre de Villiers, Stefan Holdenrieder and Piet J Pretorius in Tumor Biology
DOI: 10.25384/sage.7149767.v1
title: TUB_Supplementary_file_2 – Supplemental material for Sequence analysis of cell-free DNA derived from cultured human bone osteosarcoma (143B) cells

description: Supplemental material, TUB_Supplementary_file_2 for Sequence analysis of cell-free DNA derived from cultured human bone osteosarcoma (143B) cells by Abel Jacobus Bronkhorst, Johannes F Wentzel, Vida Ungerer, Dimetrie L Peters, Janine Aucamp, Etienne Pierre de Villiers, Stefan Holdenrieder and Piet J Pretorius in Tumor Biology
DOI: 10.25384/sage.7149770.v1
title: TUB_Supplementary_file_3 – Supplemental material for Sequence analysis of cell-free DNA derived from cultured human bone osteosarcoma (143B) cells

description: Supplemental material, TUB_Supplementary_file_3 for Sequence analysis of cell-free DNA derived from cultured human bone osteosarcoma (143B) cells by Abel Jacobus Bronkhorst, Johannes F Wentzel, Vida Ungerer, Dimetrie L Peters, Janine Aucamp, Etienne Pierre de Villiers, Stefan Holdenrieder and Piet J Pretorius in Tumor Biology
DOI: 10.25384/sage.7149773
title: TUB_Supplementary_file_4 – Supplemental material for Sequence analysis of cell-free DNA derived from cultured human bone osteosarcoma (143B) cells

description: Supplemental material, TUB_Supplementary_file_4 for Sequence analysis of cell-free DNA derived from cultured human bone osteosarcoma (143B) cells by Abel Jacobus Bronkhorst, Johannes F Wentzel, Vida Ungerer, Dimetrie L Peters, Janine Aucamp, Etienne Pierre de Villiers, Stefan Holdenrieder and Piet J Pretorius in Tumor Biology
DOI: 10.25384/sage.7275452
title: RS_Supplemental_Tables - Differentially Expressed lncRNAs After the Activation of Primordial Follicles in Mouse

description: RS_Supplemental_Tables for Differentially Expressed lncRNAs After the Activation of Primordial Follicles in Mouse by Liping Zheng, Ruichen Luo, Tie Su, Liaoliao Hu, Fengxin Gao, and Xiaoning Zhang in Reproductive Sciences
DOI: 10.25384/sage.7120958.v1
title: AbouChadi_Finnigan_replication – Supplemental material for Rights for Same-Sex Couples and Public Attitudes Toward Gays and Lesbians in Europe

description: Supplemental material, AbouChadi_Finnigan_replication for Rights for Same-Sex Couples and Public Attitudes Toward Gays and Lesbians in Europe by Tarik Abou-Chadi and Ryan Finnigan in Comparative Political Studies
DOI: 10.25384/sage.7121039.v1
title: Replication_data – Supplemental material for Which Immigrants Should Be Naturalized? Which Should Be Deported? Evidence from a Survey Experiment in Côte d’Ivoire

description: Supplemental material, Replication_data for Which Immigrants Should Be Naturalized? Which Should Be Deported? Evidence from a Survey Experiment in Côte d’Ivoire by Nathaniel Terence Cogley, John Andrew Doces and Beth Elise Whitaker in Political Research Quarterly
DOI: 10.25384/sage.7121048.v1
title: Supplementary_Data_File_1 – Supplemental material for A cryptotephra record from the Lake Victoria sediment core record of Holocene palaeoenvironmental change

description: Supplemental material, Supplementary_Data_File_1 for A cryptotephra record from the Lake Victoria sediment core record of Holocene palaeoenvironmental change by Christine S Lane, Catherine Martin-Jones and Thomas C Johnson in The Holocene
DOI: 10.25384/sage.7262351
title: TUB-18-0041.R2_TableS3 – Supplemental material for Targeted next-generation sequencing of 50 cancer-related genes in Japanese patients with oral squamous cell carcinoma

description: Supplemental material, TUB-18-0041.R2_TableS3 for Targeted next-generation sequencing of 50 cancer-related genes in Japanese patients with oral squamous cell carcinoma by Takafumi Nakagaki, Miyuki Tamura, Kenta Kobashi, Akina Omori, Ryota Koyama, Masashi Idogawa, Kazuhiro Ogi, Hiroyoshi Hiratsuka, Takashi Tokino and Yasushi Sasaki in Tumor Biology
DOI: 10.15468/dl.y26rdq
title: Occurrence Download

description: A dataset containing 8322 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia dentata Michx."
 ]
}

 The dataset includes 8322 records from 258 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105903-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25384/sage.7072403
title: Donno_Kreft_CPS_replication_do – Supplemental material for Authoritarian Institutions and Women’s Rights

description: Supplemental material, Donno_Kreft_CPS_replication_do for Authoritarian Institutions and Women’s Rights by Daniela Donno and Anne-Kathrin Kreft in Comparative Political Studies
DOI: 10.25384/sage.7343300
title: Supplemental Data1 - Supplemental material for Color, Music, and Emotion: Bach to the Blues

description: Supplemental material, Supplemental Data1 for Color, Music, and Emotion: Bach to the Blues by Kelly L. Whiteford, Karen B. Schloss, Nathaniel E. Helwig and Stephen E. Palmer in i-Perception
DOI: 10.25384/sage.12661930
title: 2._Imputation_of_SES_and_Regression_Models – Research Data for Protest Issues and Political Inequality in Latin America

description: Research Data, 2._Imputation_of_SES_and_Regression_Models for Protest Issues and Political Inequality in Latin America by Nicolás M. Somma, Matías Bargsted and Felipe Sánchez in American Behavioral Scientist
DOI: 10.25384/sage.7058771
title: Supplemental table7 - Supplemental material for Hypoxia-induced alterations in the lung ubiquitin proteasome system during pulmonary hypertension pathogenesis

description: Supplemental material, Supplemental table7 for Hypoxia-induced alterations in the lung ubiquitin proteasome system during pulmonary hypertension pathogenesis by Brandy E. Wade, Jingru Zhao, Jing Ma, C. Michael Hart and Roy L. Sutliff in Pulmonary Circulation
DOI: 10.25384/sage.7076480
title: Supplemental material2 - Supplemental material for Asymptotic variability of (multilevel) multirater kappa coefficients

description: Supplemental material, Supplemental material2 for Asymptotic variability of (multilevel) multirater kappa coefficients by Sophie Vanbelle in Statistical Methods in Medical Research
DOI: 10.25384/sage.7275452.v1
title: RS_Supplemental_Tables - Differentially Expressed lncRNAs After the Activation of Primordial Follicles in Mouse

description: RS_Supplemental_Tables for Differentially Expressed lncRNAs After the Activation of Primordial Follicles in Mouse by Liping Zheng, Ruichen Luo, Tie Su, Liaoliao Hu, Fengxin Gao, and Xiaoning Zhang in Reproductive Sciences
DOI: 10.25384/sage.6813257.v1
title: DS_10.1177_1558944718783472 – Supplemental material for Pollicization of Biphalangeal Index Finger for Type IV Thumb Hypoplasia: A Case Report Describing Preoperative Planning, Intraoperative Decision-Making, and Technical Modifications

description: Supplemental material, DS_10.1177_1558944718783472 for Pollicization of Biphalangeal Index Finger for Type IV Thumb Hypoplasia: A Case Report Describing Preoperative Planning, Intraoperative Decision-Making, and Technical Modifications by Natalie M. Plana, Valeriy Shubinets, Michael G. Tecce, Ines C. Lin and Benjamin Chang in HAND
DOI: 10.25384/sage.7058771.v1
title: Supplemental table7 - Supplemental material for Hypoxia-induced alterations in the lung ubiquitin proteasome system during pulmonary hypertension pathogenesis

description: Supplemental material, Supplemental table7 for Hypoxia-induced alterations in the lung ubiquitin proteasome system during pulmonary hypertension pathogenesis by Brandy E. Wade, Jingru Zhao, Jing Ma, C. Michael Hart and Roy L. Sutliff in Pulmonary Circulation
DOI: 10.25384/sage.6813356.v1
title: Complete_Patient_data_2018-03-15 – Supplemental material for Recurrent Cardiology Evaluation for Innocent Heart Murmur: Echocardiogram Utilization

description: Supplemental material, Complete_Patient_data_2018-03-15 for Recurrent Cardiology Evaluation for Innocent Heart Murmur: Echocardiogram Utilization by Nupur N. Dalal, Sanja Dzelebdzic, Lowell H. Frank, Sarah B. Clauss, Stephanie J. Mitchell, Othman A. Aljohani, Tyler Bradley-Hewitt and Ashraf S. Harahsheh in Clinical Pediatrics
DOI: 10.25384/sage.7054343.v1
title: Supplemental Material, Gibler_and_Owsiak_rep_data - Democracy and the Settlement of International Borders, 1919 to 2001

description: Supplemental Material, Gibler_and_Owsiak_rep_data for Democracy and the Settlement of International Borders, 1919 to 2001 by Douglas M. Gibler, and Andrew P. Owsiak in Journal of Conflict Resolution