cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.6jn4aa
title: Occurrence Download

description: A dataset containing 220 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation, Material sample)",
 "Continent is one of (North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pseudomyrmex elongatulus"
 ]
}

 The dataset includes 220 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040639-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c50r9mh6k
title: MassIVE MSV000099937 - Proteomic analysis of mouse brain from CU, CI-E4, and CU-non-E4 mice
title: Whole brains from CU, CI-E4, and CU-non-E4 mice (four replicates) were lysed with 1X SDS buffer (5% SDS, 50 mM TEAB, pH 8.5). The lysates were purified and digested with the S-trap method following the provided protocol. Tryptic digested peptides were labeled with 18-plex TMT isotopes (Thermo Fisher Scientific). Following labeling, all TMT-labeled peptides were combined, dried using Speed-Vac, and desalted with Pierece peptide desalting spin columns (Thermo Fisher Scientific). Subsequently, peptides were combined and fractionated into 20 fractions by basic reverse-phase liquid chromatography. LC-MS/MS analysis was performed using an UltiMate 3000 RSLCnano system (Thermo Scientific) coupled to an Orbitrap Exploris 480 mass spectrometer (Thermo Fisher Scientific) at the Korea Basic Science Institute. The mobile phases A and B were composed of 0% and 99.9% acetonitrile containing 0.1% formic acid, respectively. The LC gradient at a flow rate of 250 nL/min was applied for 140 min for the peptide separation. The Orbitrap Exploris 480 was operated in data-dependent mode, and the MS2 scans were performed with HCD fragmentation (37.5% collision energy).
DOI: 10.15468/dl.ehr4fk
title: Occurrence Download

description: A dataset containing 147387 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Carabidae"
 ]
}

 The dataset includes 147387 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040621-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gva5tr
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-107.9688 21.44913, -107.8188 21.44913, -107.8188 21.59913, -107.9688 21.59913, -107.9688 21.44913))"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040640-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25505/fiz.icsd.cc2klvmn
title: CSD 2371612: Experimental Crystal Structure Determination

description: Related Article: Yurui Wang, Xuehua Dong, Wei Zeng, Ling Huang, Zhien Lin, Hongmei Zeng, Guohong Zou|2025|Chem.Mater.|||doi:10.1021/acs.chemmater.5c02342
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2klvnp
title: CSD 2371613: Experimental Crystal Structure Determination

description: Related Article: Yurui Wang, Xuehua Dong, Wei Zeng, Ling Huang, Zhien Lin, Hongmei Zeng, Guohong Zou|2025|Chem.Mater.|||doi:10.1021/acs.chemmater.5c02342
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2klvpq
title: CSD 2371614: Experimental Crystal Structure Determination

description: Related Article: Yurui Wang, Xuehua Dong, Wei Zeng, Ling Huang, Zhien Lin, Hongmei Zeng, Guohong Zou|2025|Chem.Mater.|||doi:10.1021/acs.chemmater.5c02342
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2p31nj
title: CSD 2475587: Experimental Crystal Structure Determination

description: Related Article: Catherine K. Badding, Danilo Puggioni, Jing Yang, Eric A. Riesel, Alison B. Altman, Yue Meng, Yingwei Fei, James M. Rondinelli, Danna E. Freedman|2025|J.Am.Chem.Soc.|||doi:10.1021/jacs.5c12987
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2p31pk
title: CSD 2475588: Experimental Crystal Structure Determination

description: Related Article: Catherine K. Badding, Danilo Puggioni, Jing Yang, Eric A. Riesel, Alison B. Altman, Yue Meng, Yingwei Fei, James M. Rondinelli, Danna E. Freedman|2025|J.Am.Chem.Soc.|||doi:10.1021/jacs.5c12987
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2p31ql
title: CSD 2475589: Experimental Crystal Structure Determination

description: Related Article: Catherine K. Badding, Danilo Puggioni, Jing Yang, Eric A. Riesel, Alison B. Altman, Yue Meng, Yingwei Fei, James M. Rondinelli, Danna E. Freedman|2025|J.Am.Chem.Soc.|||doi:10.1021/jacs.5c12987
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2p31mh
title: CSD 2475586: Experimental Crystal Structure Determination

description: Related Article: Catherine K. Badding, Danilo Puggioni, Jing Yang, Eric A. Riesel, Alison B. Altman, Yue Meng, Yingwei Fei, James M. Rondinelli, Danna E. Freedman|2025|J.Am.Chem.Soc.|||doi:10.1021/jacs.5c12987
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.drd3jb
title: Occurrence Download

description: A dataset containing 1630 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Specimen)",
 "Continent is one of (North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pseudomyrmex elongatus"
 ]
}

 The dataset includes 1630 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040641-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ctu5k
title: Occurrence Download

description: A dataset containing 605 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation, Material sample)",
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pseudomyrmex ferrugineus"
 ]
}

 The dataset includes 605 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040642-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.99vkyw
title: Occurrence Download

description: A dataset containing 394 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 980.0-1000000.0",
 "Geometry POLYGON((-84.25714 29.61951,-55.07531 29.61951,-55.07531 47.06075,-84.25714 47.06075,-84.25714 29.61951))",
 "TaxonKey is Vincetoxicum rossicum"
 ]
}

 The dataset includes 394 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040643-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2fw2fn
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-107.8188 21.44913, -107.6688 21.44913, -107.6688 21.59913, -107.8188 21.59913, -107.8188 21.44913))"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040644-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hb7rxv
title: Occurrence Download

description: A dataset containing 5159 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dicamptodon ensatus"
 ]
}

 The dataset includes 5159 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040645-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mdrh23
title: Occurrence Download

description: A dataset containing 347 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agrostis infirma",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is Chinese Taipei"
 ]
}

 The dataset includes 347 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040647-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7psfhq
title: Occurrence Download

description: A dataset containing 642 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ainsliaea henryi",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is Chinese Taipei"
 ]
}

 The dataset includes 642 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040648-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c8dy7n
title: Occurrence Download

description: A dataset containing 5628 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Global Register of Introduced and Invasive Species - Hawaii, United States (ver.2.0, 2022)"
 ]
}

 The dataset includes 5628 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040649-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bkqef8
title: Occurrence Download

description: A dataset containing 4823 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Menispermum dauricum"
 ]
}

 The dataset includes 4823 records from 170 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040650-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gpbyzg
title: Occurrence Download

description: A dataset containing 741 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Abies kawakamii",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is Chinese Taipei"
 ]
}

 The dataset includes 741 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040646-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/kpnc-7w93
title: NBDL Data Download
DOI: 10.15468/dl.vy8pme
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-107.6688 21.44913, -107.5188 21.44913, -107.5188 21.59913, -107.6688 21.59913, -107.6688 21.44913))"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040651-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tpzc7b
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Litoria timida"
 ]
}

 The dataset includes 36 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040652-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17607443
title: Microbiome datasets of MDPD (Microbiome Database of Pulmonary Diseases)

description: The microbiome database for Pulmonary Diseases (MDPD) is an open-access resource featuring microbiome data from 19 pulmonary diseases and healthy individuals. It contains microbiome data from 10 human body sites, including the nasal, oral, upper respiratory tract, lower respiratory tract, lung, stomach, gut, large intestine, rectum, and anus. The 19 pulmonary diseases are broadly categorised into five major groups; 

1. Obstructive diseases - Asthma, Chronic Obstructive Pulmonary Disease (COPD), Bronchiectasis, Bronchitis, Asthma-COPD Overlap (ACO), and COPD-Bronchiectasis Association (CBA).

2. Restrictive diseases - Acute Respiratory Distress Syndrome (ARDS), Cystic Fibrosis, Interstitial Lung Disease (ILD), Idiopathic Pulmonary Fibrosis (IPF), Sarcoidosis, and Pneumonitis.

3. Vascular diseases - Pulmonary Hypertension.

4. Infectious diseases - Bronchiolitis, COVID-19, Pneumonia, Tuberculosis, and Other Pulmonary Infections (OPI).

5. Malignancy - Lung Cancer.

6. Healthy.

BioProject IDs are manually curated from public databases, such as PubMed (Data availability section) and NCBI BioProject. The raw data (.fastq) for all the BioProjects were downloaded and re-analysed using an in-house pipeline (DADA2, Kraken2, and Bracken). It includes Amplicon-16S, Amplicon-ITS, and whole metagenome sequencing data from 430 BioProjects and 59,362 runs/samples. MDPD collects data on approximately 278 subgroups of diseases and healthy, including COPD stable, Eosinophilic asthma, healthy nonsmokers and others. It provides comprehensive microbial information of Bacteria (n = 2296), Eukaryotes (n = 219), Viruses (n = 193), and Archaea (n = 13), such as Biofilm formation, Pulmonary disease association, and pathogenicity. MDPD captures the dynamics of the microbes in different human body sites, including their composition and abundance, association of the microbes with various covariates (age, gender, smoking status), microbial markers for different groups (diseases/healthy) and their subgroups, cross-disease or healthy subgroup comparisons, and microbial community structure. This repository contains the metadata information of all the BioProjects (430) along with the .biom files for reproducibility and downstream applications (machine learning, meta-analysis).
DOI: 10.5281/zenodo.17607444
title: Microbiome datasets of MDPD (Microbiome Database of Pulmonary Diseases)

description: The microbiome database for Pulmonary Diseases (MDPD) is an open-access resource featuring microbiome data from 19 pulmonary diseases and healthy individuals. It contains microbiome data from 10 human body sites, including the nasal, oral, upper respiratory tract, lower respiratory tract, lung, stomach, gut, large intestine, rectum, and anus. The 19 pulmonary diseases are broadly categorised into five major groups; 

1. Obstructive diseases - Asthma, Chronic Obstructive Pulmonary Disease (COPD), Bronchiectasis, Bronchitis, Asthma-COPD Overlap (ACO), and COPD-Bronchiectasis Association (CBA).

2. Restrictive diseases - Acute Respiratory Distress Syndrome (ARDS), Cystic Fibrosis, Interstitial Lung Disease (ILD), Idiopathic Pulmonary Fibrosis (IPF), Sarcoidosis, and Pneumonitis.

3. Vascular diseases - Pulmonary Hypertension.

4. Infectious diseases - Bronchiolitis, COVID-19, Pneumonia, Tuberculosis, and Other Pulmonary Infections (OPI).

5. Malignancy - Lung Cancer.

6. Healthy.

BioProject IDs are manually curated from public databases, such as PubMed (Data availability section) and NCBI BioProject. The raw data (.fastq) for all the BioProjects were downloaded and re-analysed using an in-house pipeline (DADA2, Kraken2, and Bracken). It includes Amplicon-16S, Amplicon-ITS, and whole metagenome sequencing data from 430 BioProjects and 59,362 runs/samples. MDPD collects data on approximately 278 subgroups of diseases and healthy, including COPD stable, Eosinophilic asthma, healthy nonsmokers and others. It provides comprehensive microbial information of Bacteria (n = 2296), Eukaryotes (n = 219), Viruses (n = 193), and Archaea (n = 13), such as Biofilm formation, Pulmonary disease association, and pathogenicity. MDPD captures the dynamics of the microbes in different human body sites, including their composition and abundance, association of the microbes with various covariates (age, gender, smoking status), microbial markers for different groups (diseases/healthy) and their subgroups, cross-disease or healthy subgroup comparisons, and microbial community structure. This repository contains the metadata information of all the BioProjects (430) along with the .biom files for reproducibility and downstream applications (machine learning, meta-analysis).
DOI: 10.15468/dl.tz8r6b
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-107.5188 21.44913, -107.3688 21.44913, -107.3688 21.59913, -107.5188 21.59913, -107.5188 21.44913))"
 ]
}

 The dataset includes 7 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040654-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ecmcv5
title: Occurrence Download

description: A dataset containing 288 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Continent is one of (North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pseudomyrmex filiformis"
 ]
}

 The dataset includes 288 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040653-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13772768
title: Layline Shareholder activism dataset
DOI: 10.15468/dl.66q4he
title: Occurrence Download

description: A dataset containing 9024 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Specimen)",
 "Continent is one of (North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pseudomyrmex gracilis"
 ]
}

 The dataset includes 9024 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040655-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.whu5pe
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Litoria dorsalis"
 ]
}

 The dataset includes 50 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040656-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30261643
title: Support data for "Deciphering the Structural Diversity and Classification of IncHI2 plasmid among <i>Salmonella enterica</i>"

description: IncHI2 plasmids are large mosaic plasmids and well-known carriers of antibiotic resistance genes (ARGs) facilitating their transmission in <i>Salmonella</i>. However, the global formation and evolution of this plasmid were still unclear. Herein, we used short and long-read sequencing to characterize complete plasmid structure in multiple <i>Salmonella</i> serotypes and the global transmission of plasmids and structural comparison of plasmids have been inferred using public available database. A comprehensive pangenomic and phylogenomic analysis indicates that: 1) There are two types of IncHI2 plasmids (classical and epidemic plasmids), the core genes of two types plasmids showed only 98% homology; 2) The accessory genome of the IncHI2 plasmid is highly flexible and diverse, facilitated by insertion sequences; 3) The transmission routes of the IncHI2 plasmid family, inferred from our analysis of the available database, suggests that members emerged in North America, transferred to Europe and Asia and circled back; 4) The global dissemination of IncHI2 plasmids is related to the geographical region and serotype. The classical plasmids were limited in North America and rare detected serotypes, while the epidemic ones were distributed globally and in multiple predominant serotypes (i.e, Kentucky, 4,[5],12:i:-, Typhimurium). Notably, epidemic type IncHI2 plasmid lacks the carriage of ARGs in Kentucky from North America poses a potential public health risk. Taken together, our findings provide additional insights into IncHI2 plasmid structures and geographical spread, thereby complementing existing knowledge of IncHI2 plasmid distribution patterns observed across <i>Salmonella</i> serotypes.