cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.gxd2547mm
title: Sheepnose mussel (P. cyphyus) microsatellite dataset for population genetic analysis

description: North American freshwater mussel species have experienced substantial
 range fragmentation and population reductions. These impacts have the
 potential to reduce genetic connectivity among populations and increase
 the risk of losing genetic diversity. Thirteen microsatellite loci and an
 883 bp fragment of the mitochondrial ND1 gene were used to assess genetic
 diversity, population structure, contemporary migration rates, and
 population size changes across the range of the Sheepnose mussel
 (Plethobasus cyphyus). Population structure analyses reveal five
 populations, three in the Upper Mississippi River Basin and two in the
 Ohio River Basin. Sampling locations exhibit a high degree of genetic
 diversity and contemporary migration estimates indicate that migration
 between populations within river basins is occurring, although at low
 rates. but no migration is occurring between the Ohio and Mississippi
 river basins. No evidence of bottlenecks was detected, and almost all
 locations exhibited the signature of population expansion. Our results
 indicate that although anthropogenic activity has altered the landscape
 across the range of the Sheepnose, these activities have yet to be
 reflected in losses of genetic diversity. Efforts to conserve Sheepnose
 populations should focus on maintaining existing habitats and fostering
 genetic connectivity between extant demes to conserve remaining genetic
 diversity for future viable Sheepnose populations.
description: Mussels were collected by snorkeling or SCUBA. Samples for DNA
 extraction were collected by taking a small (~1mm) biopsy of mantle tissue
 (Berg et al. 1995) or by using cytology brushes that were swabbed over the
 mantle tissue of mussels to accumulate mucous and sloughed cells (Henley
 et al. 2006). Biopsy samples were stored in 95% ethanol and DNA was
 extracted from mantle tissue samples using the Qiagen DNeasy® Blood and
 Tissue Kit (Qiagen # 69506) according to the kit instructions. Cytology
 brush samples were stored in the lysis buffer provided with the Puregene
 Buccal Cell Core Kit B (Qiagen) and DNA was extracted following the kit
 instructions. The loci markers were developed by Genetic Identification
 Services, Chatsworth, CA. Polymerase chain reactions (PCR) were performed
 using 10 µL reactions (~2 ng of genomic DNA was used in each reaction).
 The standard M13 protocol (Schuelke 2000) was used with the florescent dye
 labeled with HEX (Applied Biosystems). Reagents for a 10 µL reaction
 included: 6.6 µL H<sub>2</sub>0, 1 µL Biolase Buffer (10x),
 0.3 µL MgCl<sub>2</sub>, 0.8 µL dNTP, 0.1 µL forward primer,
 0.1 µL reverse primer, 0.05 µL M13 labeled oligo, 0.05 µL Biolase Taq
 polymerase, and 1 µL template DNA. Reactions were run in Eppendorf Master
 Cycler thermal cyclers under consistent conditions (95°C/5min; [94°C/30
 sec.; 62°C/60 sec.; 72°C/30 sec.] X 10 cycles; [94°C/30 sec.; 55-59.4
 °C/60 sec.; 72°C/30 sec.; 72°C/20 min] X 25 cycles; 72°C/4 min).
DOI: 10.5061/dryad.vmcvdncsx
title: Data from: Revision of Ordovician chitinozoan Lagenochitina esthonica sensu lato: morphometrics, biostratigraphy and paleobiogeography

description: Data presented here contribute to the results documented in the paper:
 Liang, Y., Nõlvak, J., Xu, H., Chen, Y. and Hints, O. (2021) Revision of
 Ordovician chitinozoan Lagenochitina esthonica sensu lato: morphometrics,
 biostratigraphy and paleobiogeography. Journal of Paleontology, in press.
 Two datasets are included, one is Supplemental Data 1 cited in Liang et
 al. (2021) which contains detailed information of the occurrence data of
 previously published Lagenochitina esthonica. The other is Supplemental
 Data 2 cited in the paper which contains two sheets. One sheet named as
 "Original data"and it presents the original raw data of the
 measurements of Lagenochitina esthonica specimens obtained at the Jägala,
 Kaldase, Kaugatuma and Baldone sections, eastern Baltica. The other named
 as "Two forms", which divided the raw data into two groups for
 further statistical study. Statistical morphometric study based on the
 measurements of L. esthonica indicates that two varieties could be
 recognized: a relatively short form with a test length around 400 μm and a
 L/Dp* ratio around 1.4–3.0, and a slender form usually longer than 600 μm
 in length with a L/Dp* ratio around 2.0–7.0. Stratigraphic and geographic
 distributions based on available occurrence data suggest that the short
 form occurs in the upper Tremadocian to lower Dapingian, whereas the
 slender form is mostly reported from the lower and middle Darriwilian.
 Both forms are identified on Baltica; the short form has also been
 reported from Laurentia and South China, whereas the other is known also
 from Avalonia and Gondwana. The morphological distinction, together with
 differences in stratigraphic and spatial ranges, suggest that the two
 forms represent separate species: the original stout L. esthonica, based
 on the morphology of the holotype, and the slender L. megaesthonica n. sp.
 described herein. The updated taxonomy enhances the stratigraphic and
 biogeographic usefulness of lagenochitinids globally.
description: The occurrence data are collected based on previously published
 literature. The measurement data are measured based on
 optical images. Measured specimens are obtained from
 the Ordovician outcrops and drill cores of the East Baltica. 
description: The README file contains an explanation of each of the variables
 in the dataset, its measurement units, and data
 collection information.
DOI: 10.5061/dryad.fn2z34ttw
title: Data from: A geographic cline in the ability to self-fertilize is unrelated to the pollination environment

description: The reproductive assurance (RA) hypothesis predicts that the ability to
 autonomously self-fertilize should be favored in environments where a lack
 of mates or pollinators limits outcross reproduction. Because such limits
 to outcrossing are predicted to be most severe at range edges, elevated
 autonomy in peripheral populations is often attributed to RA. We test this
 hypothesis in 24 populations spanning the range of Campanula americana,
 including sampling at the range interior and three geographic range edges.
 We scored autonomous fruit set in a pollinator-free environment and
 detected clinal variation—autonomy increased linearly from the southern to
 the northern edge, and from the eastern to the western edge. We then
 address whether the cline reflects the contemporary pollination
 environment. We measured population size, plant density, pollinator
 visitation, outcross pollen limitation and RA in natural populations over
 two years. Most populations were pollen limited, and those that
 experienced higher visitation rates by bumblebees had reduced pollen
 limitation. Reproductive assurance, however, was generally low across
 populations and was unrelated to pollen limitation or autonomy. Neither
 pollen limitation nor RA displayed geographic clines. Finally, autonomy
 was not associated with pollinator visitation rates or mate availability.
 Thus, the data do not support the RA hypothesis; clinal variation in
 autonomy is unrelated to the current pollination environment. Therefore,
 geographic patterns of autonomy are likely the result of
 historical processes rather than contemporary natural selection for RA.
description: Pollinator and seed set data were collected in the field.
 Autonomous selfing data was collected in the greenhouse.<br> Raw
 data and populations means for each of two years are included.
description: See READ_ME file for the description of each variable in the
 attached datasets.<br> The Methods section of the Ecology paper
 provide context in which to interpret the attached data.
DOI: 10.5061/dryad.pg4f4qrq4
title: Post‐agriculture rain forest succession on a tropical Pacific island

description: We surveyed the tree and seedling community in 34 vegetation
 plots in mature and &gt;50 y old secondary lowland
 rain forest on the Polynesian island of Tutuila, American Samoa. The main
 data set includes original data from the tree surveys as well as all
 repeat surveys of seedling plots. We also include all R code and data sets
 used in analyses, including soil and environmental data, species by plot
 matrices for NMDS, and processed data used for survival analysis.
description: Trees with stem diameter ≥10 cm were surveyed in 17-m radius
 crcular plots (907.9 sq m each, total area surveyed = 3.09 ha). Seedling
 inventory was conducted in the center of the tree plot, in 15 2×2m
 seedling miniplots laid out in five rows of three contiguous miniplots
 with a 1-m wide path between each row of plots. We censused every seedling
 of a tree species that was ≥20 cm tall and ≤9.9 cm dbh. The first seedling
 survey was conducted in June 2011, with subsequent surveys every six
 months through June 2014, for a total of seven census events across three
 years. For censuses 2-7 we located all tagged stems, and identified and
 tagged new recruits that had achieved ≥20 cm stem height since the
 previous census. Those that died were recorded as "dead". We
 also accounted for seedlings that sustained damage and were reduced to
 &lt;20 cm height, or which appeared dead but then
 resprouted.
DOI: 10.5061/dryad.tqjq2bw07
title: Hydrogen peroxide signaling mediates fertilization and post-fertilization development in the red alga Bostrychia moritziana

description: Reactive oxygen species (ROS) signaling has a multitude of roles in
 cellular processes throughout biology. We hypothesized that red algal
 fertilization may offer an interesting model to study ROS-mediated
 signaling as the stages of fertilization are complex and unique. We
 microscopically localized ROS production and monitored the expression of
 three homologues of NADPH-oxidase in reproductive cells during
 fertilization. ROS were instantaneously produced by spermatia (sperm) when
 they attached to female trichogynes, diffused across the cell membrane in
 the form of H2O2, and triggered ROS generation in the carpogonium (egg) as
 well as carpogonial branch cells which are not in direct contact with
 spermatia. The expression of NADPH-oxidase homologues, Bmrbohs, began to
 be upregulated in the female plant upon gamete binding, peaking during the
 fertilization process and descending back to their original level after
 fertilization. Pretreatment with diphenylene iodonium (DPI) or caffeine
 blocked the gene expression as well as H2O2 production. Post-fertilization
 development was also inhibited when the redox state of the plants were
 perturbed with H2O2 at any time before or after the
 fertilization. Our results suggest that H2O2 acts as an
 auto-propagating signaling molecule, possibly through Ca+2 channel
 activation, and regulates gene expression involved in fertilization as
 well as post-fertilization development in red algae. Reactive
 oxygen species (ROS) signaling has a multitude of roles in cellular
 processes throughout biology. We hypothesized that red algal fertilization
 may offer an interesting model to study ROS-mediated signaling as the
 stages of fertilization are complex and unique. We
 microscopically localized ROS production and monitored the expression of
 three homologues of NADPH-oxidase in reproductive cells during
 fertilization. ROS were instantaneously produced by spermatia (sperm) when
 they attached to female trichogynes, diffused across the cell membrane in
 the form of H2O2, and triggered ROS generation in the carpogonium (egg) as
 well as carpogonial branch cells which are not in direct contact with
 spermatia. The expression of NADPH-oxidase homologues, Bmrbohs, began to
 be upregulated in the female plant upon gamete binding, peaking during the
 fertilization process and descending back to their original level after
 fertilization. Pretreatment with diphenylene iodonium (DPI) or caffeine
 blocked the gene expression as well as H2O2 production. Post-fertilization
 development was also inhibited when the redox state of the plants were
 perturbed with H2O2 at any time before or after the
 fertilization. Our results suggest that H2O2 acts as an
 auto-propagating signaling molecule, possibly through Ca+2 channel
 activation, and regulates gene expression involved in fertilization as
 well as post-fertilization development in red algae.
DOI: 10.5061/dryad.37pvmcvkv
title: Hydraulic prediction of drought-induced plant dieback and top-kill depends on leaf habit and growth form

description: Hydraulic failure caused by severe drought contributes to aboveground
 dieback and whole-plant death. The extent to which dieback or whole-plant
 death can be predicted by plant hydraulic traits has rarely been tested
 among species with different leaf habits and/or growth forms. We
 investigated 19 hydraulic traits in 40 woody species in a tropical savanna
 and their potential correlations with drought response during an extreme
 drought event during the El Niño–Southern Oscillation in 2015. Plant
 hydraulic trait variation was partitioned substantially by leaf habit but
 not growth form along a trade-off axis between traits that support drought
 tolerance versus avoidance. Semi-deciduous species and shrubs had the
 highest branch dieback and top-kill (complete aboveground death) among the
 leaf habits or growth forms. Dieback and top-kill were well explained by
 combining hydraulic traits with leaf habit and growth form, suggesting
 integrating life history traits with hydraulic traits will yield better
 predictions.
DOI: 10.5281/zenodo.18397237
title: Replication package for "Responsibility sharing in a public bad experiment"

description: This is the replication package for "Responsibility sharing in a public bad experiment." The script to reproduce the results in the paper is provided in Stata 19 format.
DOI: 10.5281/zenodo.18397238
title: Replication package for "Responsibility sharing in a public bad experiment"

description: This is the replication package for "Responsibility sharing in a public bad experiment." The script to reproduce the results in the paper is provided in Stata 19 format.
DOI: 10.5061/dryad.tqjq2bw08
title: Long-term monitoring in endangered woodlands shows effects of multi-scale drivers on bird occupancy

description: Occupancy predictor data, detection predictor data, and species detections
 from sites in remnant Box Gum Grassy Woodland patches in south-eastern
 Australia. Only sites, species, and predictors used in our statistical
 analysises included. For privacy, predictors have been standardised (mean
 = 0, standard deviation = 1) and latitude and longitude have been offset
 by random vectors.
description: Values were obtained as per descriptions in the associated paper.
 Predictor variables have been standardised so that values in the in-sample
 data have a mean of 0 and standard deviation of 1.
description: Please see the README.txt file for descriptions of all
 files.
DOI: 10.5061/dryad.rfj6q57b3
title: Data from: The ecology of spider sociality – A spatial model

description: The emergence of animal societies offers unsolved problems for both
 evolutionary and ecological studies. Social spiders are specially well
 suited to address this problem given their multiple independent origins
 and distinct geographical distribution. Based on long term research on the
 spider genus Anelosimus, we developed a spatial model that recreates
 observed macroecological patterns in the distribution of social and
 subsocial spiders. We show that parallel gradients of increasing insect
 size and disturbance (rain, predation) with proximity to the lowland
 tropical rainforest would explain why social species are concentrated in
 the lowland wet tropics, but absent from higher elevations and latitudes.
 The model further shows that disturbance, which disproportionately affects
 small colonies, not only creates conditions that require group living, but
 also tempers the dynamics of large social groups. Similarly simple
 underlying processes, albeit with different players on a somewhat
 different stage, may explain the diversity of other social systems.
  
description: This dataset was created by a spatial computer model written in
 python. The dataset contains the main results, further results can be
 re-generated by the python code, or its minor variants, available as a
 supplement of our publication. The modelled grid
 incorporates parallel gradients of insect size and disturbance in a square
 lattice grid, one end of which represents a high elevation tropical
 cloudforest, the other, a lowland tropical rainforest. As we move from the
 cloudforest to the rainforest, insects get larger and disturbances more
 severe. Each node can be inhabited by a single colony of either a
 subsocial or a social spider species, as inspired by those in the genus
 <em>Anelosimus</em>.
description: readme.txt -&gt; help  
 FOLDERS basic_setting -&gt; the model with
 the basic parameters test_preysize_hyp -&gt; test
 of the prey size hypothesis test_disturbance_hyp
 -&gt; test of the disturbance hypothesis
 control_preysize_hyp -&gt; control for the prey size
 hypothesis control_disturbance_hyp -&gt; control
 for of the disturbance hypothesis  
 FILES WITHIN FOLDERS col_sizes.txt -&gt;
 records colony sizes at 1 arbitrary position in each environment
 data_allsizes -&gt; descriptive statistics for all social
 colony sizes averaged throughout the last 100 generations
 data_social -&gt; descriptive statistics on all social
 colonies within each generation data_subsocial
 -&gt; descriptive statistics on all subsocial colonies within each
 generation parameters -&gt; main parameters of the
 simulation population -&gt; records the whole grid
 (both populations) in the last two generations
DOI: 10.5281/zenodo.18390420
title: Dataset For: CRISPRCas9 Genome Editing-Based Preclinical Theranostics, Biomarkers and Drug Delivery Systems for Cancer Applications

description: The dataset present here emphasizes the transformative potential of CRISPR/Cas9-integrated theranostics, which combines targeted gene editing and advanced imaging for enhanced and effecient therapeutic monitoring for cancer treatment.
DOI: 10.5281/zenodo.18390419
title: Dataset For: CRISPRCas9 Genome Editing-Based Preclinical Theranostics, Biomarkers and Drug Delivery Systems for Cancer Applications

description: The dataset present here emphasizes the transformative potential of CRISPR/Cas9-integrated theranostics, which combines targeted gene editing and advanced imaging for enhanced and effecient therapeutic monitoring for cancer treatment.
DOI: 10.5061/dryad.d2547d83b
title: Taxonomic and functional diversity covary in rock pool microalgal communities despite their different drivers - Environmental and diatom data

description: We sampled 30 brackish‐watered, isolated rock pools once a month (17 May,
 22 June, and 22 July) in 2016 on a granitic outcrop in the western island
 of Pihlajasaari (66°68′449″N, 38°40′48″E), ca. 2 km south of Helsinki,
 Finland on the coast of the northern Baltic Sea. We examined the drivers
 and covariance of taxonomic and functional diversity among the rock pool
 communities. We measured water pH, conductivity, and temperature in the
 field, and pool morphometrics (i.e., max depth, length, and width) to the
 nearest centimeter, and calculated pool area (length * width). We
 collected a 0.5 L water sample from each pool for the determination of
 total P (SFS‐EN ISO 2004). We estimated pool X and Y coordinates (based on
 the perpendicular pool distance from the shore and the horizontal pool
 distance from the map origin in the southern end parallel to the
 shoreline, respectively) and mean isolation as a mean Euclidean distance
 (i.e., the sum of distances to five closest pools divided by five;
 Vanschoenwinkel et al. 2007) for each pool from a drawn grid map of the
 study area showing the relative location of the sampled pools to each
 other and to the seashore. We sampled benthic diatoms by collecting
 epilithic samples (ca. 25 cm2) from each pool bottom with a toothbrush,
 following EN 13946 standard (2003). A total of 500 valves per sample were
 counted and identified to the lowest taxonomic level possible (mostly
 species level) with a light microscope. We created a taxonomic
 site‐species matrix based on species relative abundances. The identified
 diatom species were classified into 21 partly overlapping functional
 groups. We first divided the species into five size classes after their
 biovolume (determined by cell length, width, thickness, and shape) and 14
 life‐form categories after interspecific morphological adaptations to
 physical and chemical disturbance (i.e., cell motility, posture, and type
 of adhesion) following Rimet & Bouchez (2012). A single taxon may
 have various successive life forms and may thus be classified into
 multiple life‐form categories. We further classified the species after
 their preferences for nutrient concentration and physical disturbance into
 four ecological guilds (high profile, low profile, motile and planktonic)
 after Passy (2007) and Rimet & Bouchez (2012). Finally, we
 separated between acid‐tolerant (acidobiontic or acidophilus species with
 pH optimum &lt;7 in Van Dam et al. (1994), and nitrogen‐fixing species
 (with cyanobacterial endosymbionts capable of fixing atmospheric
 nitrogen). In the species‐trait matrix, each species belonging to a given
 guild (other than continuous biovolume guild on a scale 1–5) was given a
 value of 1; otherwise, the value was set to 0. Each species could be
 characterized by multiple traits and could thus belong to more than only
 one guild.
DOI: 10.5061/dryad.f4qrfj6wd
title: Increased room temperature ferromagnetism in Co-doped tetrahedral perovskite niobates

description: Dilute magnetic semiconductors (DMSs), such as (In, Mn)As and (Ga, Mn)As
 prototypes, are limited to III–V semiconductors with Curie temperatures
 (Tc) far from room temperature, thereby hindering their wide application.
 Here, one kind of DMS based on perovskite niobates is reported.
 BaMxNb(1-x)O3-δ (M=Fe, Co) powders are prepared by the
 composite-hydroxide-mediated method. The addition of M elements endows
 BaMxNb(1-x)O3-δ with local ferromagnetism. The tetragonal BaCoxNb(1-x)O3-δ
 nanocrystals can be obtained by Co doping, which shows strong saturation
 magnetization(Msat) of 2.22 emu/g, a remnant magnetization(Mr) of 0.084
 emu/g, and a small coercive field(Hc) of 167.02 Oe at room temperature.
 The ab initio calculations indicate that Co doping could lead to a 64%
 local spin polarization at the Fermi level(EF) with net spin DOS of 0.89
 electrons·eV-1, this result shows the possibility of maintaining strong
 ferromagnetism at room temperature. In addition, the trade-off effect
 between the defect band absorption and ferromagnetic properties of
 BaMxNb(1-x)O3-δ is verified experimentally and theoretically.
description: The DFT data was collected
 from the ab initio calculation results of BaM<sub>x</sub>Nb<sub>(1-x)</sub>O<sub>3-δ</sub>, which is performed by CASTEP. M(H) data was collected by the field-dependent magnetization measurement. XRD data was collected by X-ray diffraction. XPS data was collected by X-ray photoelectron spectroscopy. UV data was collected by UV-vis absorption measurement.
description: M(H), XRD, XPS, and
 UV
 data are all raw data given by the instruments and have not been
 processed.