cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24441898
title: Supplementary Material for: Esophageal Adenocarcinoma - An Unusual Pericardial and Pulmonary Metastasis: A Case Report

description: Introduction: Esophageal Adenocarcinoma (EAC) manifests in the glandular cells present in the lining of the esophagus and usually forms in the distal portion of the esophagus. The metastasis of EAC has been reported to occur in surrounding lymphovascular structures, the liver, brain, and bones. Case Presentation: We present the rare case of a 52-year-old Hispanic male with EAC metastasis to the pericardium and lungs. The patient presented with shortness of breath (SOB) off and on for the last six weeks without any usually reported symptoms of EAC like chest pain, vomiting, or chronic cough. Respiratory examinations of this patient were significant for bilateral bronchial breathing and coarse crackles. The patient had been given numerous courses of oral antibiotics over the previous weeks with the provisional diagnosis of atypical pneumonia. Cardiac tamponade pathophysiology was also observed in this patient, for which a pericardial window was created to relieve the patient's symptoms. A final diagnosis of esophageal adenocarcinoma (EAC) with an unusual metastasis in the lungs and pericardium was made based on radiological and pathological findings. The patient chose palliative care instead of curative care because of the advanced stage of this cancer. The patient received cancer diagnosis counselling and was sent to hospice care for further management. Conclusion: The metastasis of EAC to the pericardium and lungs instead of usual sites constitutes an important prognostic factor in the overall survival of patients.
DOI: 10.6084/m9.figshare.24441898.v1
title: Supplementary Material for: Esophageal Adenocarcinoma - An Unusual Pericardial and Pulmonary Metastasis: A Case Report

description: Introduction: Esophageal Adenocarcinoma (EAC) manifests in the glandular cells present in the lining of the esophagus and usually forms in the distal portion of the esophagus. The metastasis of EAC has been reported to occur in surrounding lymphovascular structures, the liver, brain, and bones. Case Presentation: We present the rare case of a 52-year-old Hispanic male with EAC metastasis to the pericardium and lungs. The patient presented with shortness of breath (SOB) off and on for the last six weeks without any usually reported symptoms of EAC like chest pain, vomiting, or chronic cough. Respiratory examinations of this patient were significant for bilateral bronchial breathing and coarse crackles. The patient had been given numerous courses of oral antibiotics over the previous weeks with the provisional diagnosis of atypical pneumonia. Cardiac tamponade pathophysiology was also observed in this patient, for which a pericardial window was created to relieve the patient's symptoms. A final diagnosis of esophageal adenocarcinoma (EAC) with an unusual metastasis in the lungs and pericardium was made based on radiological and pathological findings. The patient chose palliative care instead of curative care because of the advanced stage of this cancer. The patient received cancer diagnosis counselling and was sent to hospice care for further management. Conclusion: The metastasis of EAC to the pericardium and lungs instead of usual sites constitutes an important prognostic factor in the overall survival of patients.
DOI: 10.6084/m9.figshare.24235081
title: Supplementary Material for: The evolution and visual prognosis of glial proliferation with different grades after macular hole surgery: an optical coherence tomography-based study

description: Introduction: The glial proliferation after macular hole (MH) surgery was divided into two types previously: thos replacing the entire intraretinal laye and those involving only the inner foveal layers. The evolution and prognosis of the former type was elaborated in previous studies, but the latter one has received limited attention. Therefore, this study aims to investigate the evolution of glial proliferation with varying grades after MH surgery and its effects on foveal microstructure and best-corrected visual acuity (BCVA). Methods: In this retrospective research, we reviewed 202 eyes from 196 consecutive patients who underwent a successful idiopathic MHs repair. Based on optical coherence tomography images, glial proliferation was classified into three types: A-type, which replaced the entire intraretinal layer; B-type, located at the level of and above the external limiting membrane (ELM); and C-type, situated above the ELM. Results: Of the 67 eyes that attended the 1-, 4-, and 10-month follow-up, A-type, B-type, C-type, and no glial proliferation were identified in 27 (40.3%), 17 (25.4%), 20 (29.8%), and 3 eyes (4.5%), respectively, at 1 month. Within 10 months, the prevalence of A-type glial proliferation significantly decreased (P&lt;0.001), but the changes in B-type (P=0.261), C-type (P=0.151), and no glial proliferation (P=0.492) were not significant. In 32 of the 67 eyes, the grade of glial proliferation gradually improved, with A-type transforming into B- or C-type in 19 of 27 eyes (70.4%), B-type into C-type or no glial proliferation in 11 out of 17 eyes (64.7%), and C-type gradually disappearing in 2 out of 20 eyes (10.0%). Among the eyes that attended at least one follow-up (1M, 202 eyes; 4M, 161 eyes; 10M, 97 eyes), those with A-type glial proliferation showed the most defective outer retinal layers, worst BCVA, and thinnest central fovea compared with the other two types at all follow-up time points (P&lt;0.001). Eyes with C-type glial proliferation exhibited significantly better photoreceptor layer status and BCVA compared with those with B-type glial proliferation. A-type glial proliferation at 1 month, which showed significant association with BCVA at 10 months, could be accurately predicted by the minimum linear diameter with a cut-off &gt; 547.5 μm (P&lt;0.001). Conclusion: Within 10 months, A-type glial proliferation substantially resolves but the prevalence of B- and C-type remains unchanged. B-type glial proliferation hinders the restoration of photoreceptors and impairs visual recovery despite being located within the inner retina.
DOI: 10.5517/ccdc.csd.cc2g3dkk
title: CCDC 2267388: Experimental Crystal Structure Determination

description: Related Article: Neha Jha, Subhadip Mondal, Manmohan Kapur|2023|Chem.Commun.|59|12491|doi:10.1039/D3CC04135B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g3m07
title: CCDC 2267588: Experimental Crystal Structure Determination

description: Related Article: Lan Mei, Xiao-Rong Shu, Fa-Liang Liu, Jiao-Zhe Li, Jian-Feng Zhang, Keqi Tang, Wen-Ting Wei|2023|Green Chemistry|25|8820|doi:10.1039/D3GC02284F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.24115980.v1
title: Data for: Finding the best estimates of metabolic rates in a coral reef fish

description: Data associated with "Roche, D. G., Binning, S. A., Bosiger, Y., Johansen, J. L., & Rummer, J. L. (2013). Finding the best estimates of metabolic rates in a coral reef fish. <i>Journal of Experimental Biology</i>, <i>216</i>(11), 2103-2110." https://doi.org/10.1242/jeb.082925This is a partial dataset shared 10 years after the paper was published. Additional data are required to reproduce all the results presented in the paper. For additional data or queries, please contact Dominique Roche at dom.g.roche[at]gmail.com or dominique.roche[at]mail.mcgill.ca. Additional data can be released publicly on request.Please see the readme file for a description of column headings, abbreviations, and units.
DOI: 10.6084/m9.figshare.24115980
title: Data for: Finding the best estimates of metabolic rates in a coral reef fish

description: Data associated with "Roche, D. G., Binning, S. A., Bosiger, Y., Johansen, J. L., & Rummer, J. L. (2013). Finding the best estimates of metabolic rates in a coral reef fish. <i>Journal of Experimental Biology</i>, <i>216</i>(11), 2103-2110." https://doi.org/10.1242/jeb.082925This is a partial dataset shared 10 years after the paper was published. Additional data are required to reproduce all the results presented in the paper. For additional data or queries, please contact Dominique Roche at dom.g.roche[at]gmail.com or dominique.roche[at]mail.mcgill.ca. Additional data can be released publicly on request.Please see the readme file for a description of column headings, abbreviations, and units.
DOI: 10.34740/kaggle/ds/2859257
title: Search_screw_head
DOI: 10.6084/m9.figshare.24242137
title: Supplementary Material for: Long-term Acetylcholinesterase Depletion Alters the Levels of Key Synaptic Proteins while Maintaining Neuronal Markers in the Aging Zebrafish (Danio rerio) Brain

description: Introduction: Interventions targeting cholinergic neurotransmission like acetylcholinesterase (AChE) inhibition distinguish potential mechanisms to delay age-related impairments and attenuate deficits related to neurodegenerative diseases. However, the chronic effects of these interventions are not well-described. Methods: In the current study, global levels of cholinergic, cellular, synaptic, and inflammation-mediating proteins were assessed within the context of aging and chronic reduction of AChE activity. Long-term depletion of AChE activity was induced by using a mutant zebrafish line and they were compared with the wildtype group at young and old ages. Results: Results demonstrated that AChE activity was lower in both young and old mutants and this decrease coincided with a reduction in ACh content. Additionally, an overall age-related reduction in AChE activity and the AChE/ACh ratio was observed, this decline was more prominent in wildtype groups. The levels of an immature neuronal marker were upregulated in mutants, while a glial marker showed an overall reduction. Mutants had preserved levels of inhibitory and presynaptic elements with aging, whereas glutamate receptor subunit levels declined. Discussion/Conclusion: Long-term AChE activity depletion induces synaptic and cellular alterations. These data provide further insights into molecular targets and adaptive responses following the long-term reduction of AChE activity that was also targeted pharmacologically to treat neurodegenerative diseases in human subjects.
DOI: 10.6084/m9.figshare.24174144
title: Supplementary Material for: Factors associated with discharge against medical advice among acute stroke patients: Analysis of the Nationwide Emergency Department Sample

description: Background: Patients discharged against medical advice have been shown to have worse outcomes across a host of different conditions. However, risk factors related to an increased odds of discharge against medical advice remain understudied in patients who suffer from acute cerebral infarction. Methods: We retrospectively examined the 2019 National Emergency Department Sample Database for stroke patients. Multivariable logistic regression was used to estimate associations between patient- and hospital-level factors and the outcome of discharge against medical advice. Results: Of the 603,623 encounters for acute ischemic stroke, 8858 (1.5%) were discharged against medical advice. Predictors of discharge against medical advice were lower income quartile and having either Medicaid insurance (odds ratio [OR] 1.32, 95% confidence interval [CI] 1.10-1.58) or being uninsured (OR 1.28, 95% CI 1.03-1.58). Vascular comorbidities associated with discharge against medical advice included prior tobacco use (OR 1.60, 95%CI 1.45-1.78) and coronary artery disease (OR 1.19, 95% CI 1.04-1.35). Treatment with thrombectomy (OR 0.33, 95% CI 0.13-0.78) or systemic thrombolysis (OR 0.39, 95% CI 0.23-0.66) was inversely associated with discharge against medical advice. A high modified Charlson Comorbidity Index (3+ vs. 0, OR 0.49, 95% CI 0.42-0.56) was also associated with a lower odds of discharge against medical advice. Presenting to a Northeastern hospital had the highest rate of discharge against medical advice, when compared to other regions (p&lt;0.05). Conclusions: Certain patient-level, socioeconomic, and regional factors were associated with discharge against medical advice following acute stroke. These patient and systems-level factors warrant heightened attention in order to optimize acute care and secondary prevention strategies.
DOI: 10.6084/m9.figshare.24174144.v1
title: Supplementary Material for: Factors associated with discharge against medical advice among acute stroke patients: Analysis of the Nationwide Emergency Department Sample

description: Background: Patients discharged against medical advice have been shown to have worse outcomes across a host of different conditions. However, risk factors related to an increased odds of discharge against medical advice remain understudied in patients who suffer from acute cerebral infarction. Methods: We retrospectively examined the 2019 National Emergency Department Sample Database for stroke patients. Multivariable logistic regression was used to estimate associations between patient- and hospital-level factors and the outcome of discharge against medical advice. Results: Of the 603,623 encounters for acute ischemic stroke, 8858 (1.5%) were discharged against medical advice. Predictors of discharge against medical advice were lower income quartile and having either Medicaid insurance (odds ratio [OR] 1.32, 95% confidence interval [CI] 1.10-1.58) or being uninsured (OR 1.28, 95% CI 1.03-1.58). Vascular comorbidities associated with discharge against medical advice included prior tobacco use (OR 1.60, 95%CI 1.45-1.78) and coronary artery disease (OR 1.19, 95% CI 1.04-1.35). Treatment with thrombectomy (OR 0.33, 95% CI 0.13-0.78) or systemic thrombolysis (OR 0.39, 95% CI 0.23-0.66) was inversely associated with discharge against medical advice. A high modified Charlson Comorbidity Index (3+ vs. 0, OR 0.49, 95% CI 0.42-0.56) was also associated with a lower odds of discharge against medical advice. Presenting to a Northeastern hospital had the highest rate of discharge against medical advice, when compared to other regions (p&lt;0.05). Conclusions: Certain patient-level, socioeconomic, and regional factors were associated with discharge against medical advice following acute stroke. These patient and systems-level factors warrant heightened attention in order to optimize acute care and secondary prevention strategies.
DOI: 10.5066/p9x2i8f2
title: Ecological Model Support for the Western Everglades Restoration Project (WERP) Round Five, 2023

description: Ecological models facilitate evaluation of alternative approaches to restore the Greater Everglades ecosystem. However, the provision of useful and accessible models is a challenge because there is often a disconnect between model output and its use by decision makers. Joint Ecosystem Modeling (JEM) meets this challenge by providing ecological model output tailored to management decisions. Ecological models (i.e., ecological planning tools) were developed and used by JEM during the Central Everglades Planning Project to evaluate potential effects to natural resources in the impacted areas. There is a desire by the planning agencies and bureaus involved in the Western Everglades Restoration Project (WERP) to use these same tools for WERP evaluations of alternative restoration plans. The models of particular interest to the WERP Ecological Subteam are: (1) Marl Prairie Habitat Suitability Index in conjunction with the (2) Cape Sable Seaside Sparrow Helper, (3) (native) Florida apple snail population model (EverSnail), (4) Wading bird distribution and evaluation models (WADEM), (5) Small-sized freshwater fish density with days since drydown (DSD) metric, and (6) Alligator Habitat Suitability Index (HSI). This is round 5 of ecological modeling for the WERP.
DOI: 10.6084/m9.figshare.24440941
title: Supplementary Material for: Enhanced category-based risk assessment for neonatal early-onset sepsis: a prospective observational study

description: Introduction Compared with multivariate risk assessment, traditional category-based risk assessment (CRA) approaches for neonatal early-onset sepsis (EOS) screening are straightforward to use and do not require electronic devices. However, they are associated with higher rates of antibiotics use. This study aims to evaluate the performance of a novel enhanced CRA (eCRA) framework on EOS admissions and antibiotics use and to investigate whether a modified version with adjustments in risk factors weighting can allow its performance to match the EOS calculator, while remaining easy to implement. Method This is a prospective, single-center, two-phase observational study. Infants of all gestations delivered in a tertiary hospital in Hong Kong, with risk factors or clinical features of EOS were recruited. Phase I: A novel eCRA framework (period 2) was compared with the CDC 2010-based protocol (period 1). Phase II: A modified eCRA framework was compared theoretically with the EOS calculator. EOS-specific admissions and antibiotics use were measured. Results Phase I: 1,025 at-risk infants were recruited during period 2 and compared with 757 infants of period 1. Admissions and antibiotics use decreased from 45.8% to 29.4% and 41.1% to 28.2% respectively. Antibiotics among those at-risk but well-appearing infants decreased from 25.3% to 16.3% (p&lt;0.001 for all). Phase II: antibiotics use was similar (7.3% vs 6.4%, p=0.42) between the modified eCRA framework and the EOS calculator. Conclusions An eCRA framework can effectively and safely provide individualized guidance for EOS screening without need for tools such as the EOS calculator.
DOI: 10.5281/zenodo.10058541
title: Supplementary material

description: Supplementary material for the manuscript entitled: "Techno-economic analysis and uncertainty assessment of green hydrogen production in future exporting countries"
DOI: 10.5281/zenodo.10056217
title: Human pan-body age- and sex-specific molecular phenomena inferred from public transcriptome data using machine learning - Data

description: Expression data used in manuscript Human pan-body age- and sex-specific molecular phenomena inferred from public transcriptome data using machine learning
DOI: 10.5281/zenodo.10058709
title: Distribution of economic damages due to climate-driven sea-level rise across European regions and sectors

description: The datasets generated during and/or analysed during the study
DOI: 10.5281/zenodo.10058720
title: Distribution of economic damages due to climate-driven sea-level rise across European regions and sectors

description: The datasets generated during and/or analysed during the study
DOI: 10.5281/zenodo.8146451
title: Distribution of economic damages due to climate-driven sea-level rise across European regions and sectors

description: The datasets generated during and/or analysed during the study
DOI: 10.5281/zenodo.8146452
title: Distribution of economic damages due to climate-driven sea-level rise across European regions and sectors

description: The datasets generated during and/or analysed during the study
DOI: 10.5281/zenodo.10056218
title: Human pan-body age- and sex-specific molecular phenomena inferred from public transcriptome data using machine learning - Data

description: Expression data used in manuscript Human pan-body age- and sex-specific molecular phenomena inferred from public transcriptome data using machine learning
DOI: 10.21410/7e4/mwajol
title: Sanctions of Chinese Internet Firms from 2 February 2015 to 31 December 2020

description: This database contains the administration and judicial sanctions against Chinese private internet firms from 2 February 2015 to 31 December 2020.
DOI: 10.6084/m9.figshare.24467968
title: Benthic colonization on new materials for marine ecosystem restoration in Porto Cesareo, Italy

description: We tested the efficacy of these materials with restoration purposes through experimental tiles consisting in Biochar (B), Bioferment (F), and tiles made of concrete which were used as controls (Ct) for the colonization of marine organisms in the marine protected area of Porto Cesareo, Southern Italy (20m depth). Tiles were monitored making photographs from October 2019 to September 2021, and the colonization process analyzed using the software Photoquad.
DOI: 10.6084/m9.figshare.24467968.v1
title: Benthic colonization on new materials for marine ecosystem restoration in Porto Cesareo, Italy

description: We tested the efficacy of these materials with restoration purposes through experimental tiles consisting in Biochar (B), Bioferment (F), and tiles made of concrete which were used as controls (Ct) for the colonization of marine organisms in the marine protected area of Porto Cesareo, Southern Italy (20m depth). Tiles were monitored making photographs from October 2019 to September 2021, and the colonization process analyzed using the software Photoquad.
DOI: 10.6084/m9.figshare.24468052
title: SURF_CLI_CHN_MUL_DAY.pdf

description: 2017-2019 The Daily Surface Climate Dataset for China (V3.0)
DOI: 10.6084/m9.figshare.19351700
title: Untrimmed and trimmed alignments (and selected alignments depicting N-terminal extensions) and phylogenetic trees in nexus and pdf format for plastid-associated and other proteins in eleftherids, Ichthyodinida and psammosids.

description: The dataset contains alignments (untrimmed and trimmed) and the corresponding phylogenetic trees (in nexus and pdf format) for plastid metabolic pathways (isoprenoid and FeS cluster biosynthesis; heme biosynthesis) and the lysine biosynthesis pathway enzyme DapL in eleftherids, Ichthyodinida and psammosids. For proteins with N-terminal extensions in eleftherids and/or Ichthyodinida, manually curated alignments to showcase putative plastid-targeting sequences are included. For selected heme proteins, curated alignments for the plastidial and cytosolic clades are included. The file names include the name of the protein and, in case of alignment (*.fasta) files, it is indicated whether the alignment is untrimmed or trimmed; for the tree files (*.tre and *.tre.pdf) the file name contains the protein name and the name of the model used for tree reconstruction.The untrimmed alignments have been filtered using PREQUAL with default options, before being aligned with MAFFT G-INS-i using the VSM option (--unalignlevel 0.6). The alignments were then subjected to Divvier using the -mincol 4 and the -divvygap option before trimming with trimAl (-gt 0.01). Trees were calculated with IQ-TREE, using the -mset option to restrict model selection to LG for ModelFinder, while branch support was assessed with 1000 ultrafast bootstrap replicates.