cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7725383.v2
title: Are Mixed Gender Committees Less Biased Towards Female and Male Candidates?

description: The present research investigated the spontaneous reference to the criteria of competence, morality, and sociability in descriptions made by professional committees evaluating female and male employees’ work performance. We examined whether professional committees used different criteria in their performance appraisal of male and female employees and how gender of committee members influences this outcome. The evidence showed that men were primarily evaluated on the basis of their competence, while women were evaluated on the basis of their performance in all the three (evaluative) criteria. Moreover, using mixed compared to same gender committee members resulted in higher reliance on competence rather than on the other criteria regardless employee gender. Overall, the evidence reveals that mixed gender committees provide more similar appraisals of male and female employees, suggesting that they might be an effective way to reduce gender bias in the performance appraisals.
DOI: 10.6084/m9.figshare.7725347.v1
title: Interventions to improve gender equity in eye care in low-middle income countries: A systematic review

description: <b>Purpose</b>: Women bear an inequitable burden of blinding conditions compared to men primarily because they have more limited access to eye care services. This systematic review sought evidence regarding interventions to increase gender equity in eye care. <b>Methods</b>: We searched MEDLINE, Cochrane Central Register of Controlled Trials, EMBASE, and EBSCO CINAHL, and contacted experts to identify studies in low- and middle-income countries of health services interventions for age-related cataract, childhood cataract, and trachoma. Eligible studies could be clinical trials or observational studies, but had to present sufficient data for intervention effects to be estimated separately for women and men. <b>Results</b>: We included four cluster RCTs and nine observational studies. All were judged to have serious risk of bias. Six studies examined interventions involving training rural community volunteers to identify, educate and assist individuals with unmet eye care needs. Interventions were associated with reduced gender inequities in all-cause blindness, clinic attendance, cataract surgery coverage and trachoma treatment coverage (low-to-very low quality evidence). Studies in Nepal and Tanzania examining a multicomponent intervention to improve follow-up after pediatric cataract surgery found reduced gender inequities in follow-up rates at 10 weeks (low quality evidence). <b>Conclusion</b>: Limited evidence exists to inform health service planners regarding interventions to reduce gender inequity in visual impairment and blindness. Training community volunteers to identify and counsel affected individuals, and empower them to circumvent or challenge socioeconomic barriers to accessing care holds promise. Future interventions ought to explicitly consider gender in their design and implementation, and incorporate high-quality evaluation efforts.
DOI: 10.7284/122286
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AR4C using a Sea-Bird SBE-911+ instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122284
title: Fluorometer data collected during research cruise AR4C using a WET Labs WETStar instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7725284
title: Annotation of non-coding RNA

description: Annotation of non-coding RNA in S. suberectus genome
DOI: 10.7284/122190
title: GNSS (Global Navigation Satellite System) data collected during research cruise AR4C using a C&C C-Nav 3050 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7725272
title: Gene structure annotation

description: Gene annotation of S. suberectus genome combine with denovo, homolog and RNA-seq three methods
DOI: 10.7284/122285
title: Gyrocompass data collected during research cruise AR4C using a Sperry NAVIGAT X MK 1 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7725242
title: Hi-C assembly result

description: Hi-C assembly result
DOI: 10.6084/m9.figshare.7725242.v1
title: Hi-C assembly result

description: Hi-C assembly result
DOI: 10.6084/m9.figshare.7725269
title: Classification of repetitive elements

description: Classification of repetitive elements in S. suberectus genome. Total content is the non-redundant results after eliminating the overlap. Terms in bold indicate the families, others are the corresponding subfamilies.
DOI: 10.6084/m9.figshare.7725236
title: Summary of S. suberectus pseudomolecules

description: This file is the summary of S. suberectus pseudomolecules.The rest of scaffolds unanchored to chromosome are not listed.
DOI: 10.6084/m9.figshare.7725269.v1
title: Classification of repetitive elements

description: Classification of repetitive elements in S. suberectus genome. Total content is the non-redundant results after eliminating the overlap. Terms in bold indicate the families, others are the corresponding subfamilies.
DOI: 10.7284/122292
title: Multibeam Echosounder data collected during research cruise AR4C using a Kongsberg EM710 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7725236.v1
title: Summary of S. suberectus pseudomolecules

description: This file is the summary of S. suberectus pseudomolecules.The rest of scaffolds unanchored to chromosome are not listed.
DOI: 10.7284/122289
title: Radiometer data collected during research cruise AR4C using a Biospherical QSR-2150 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122290
title: Radiometer data collected during research cruise AR4C using a Eppley RAD instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122288
title: Singlebeam Echosounder data collected during research cruise AR4C using a Knudsen 3260 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7725206
title: Supplementary Material for: Quantitative Analysis of Free Amino Acids and Urea Derived from Isolated Corneocytes of Healthy Young, Healthy Aged, and Diseased Skin

description: <b><i>Background/Aims:</i></b> Free amino acids (FAAs) and urea, present inside the corneocytes, can be important indicators of skin condition. However, due to the lack of a standard extraction protocol for FAAs from corneocytes, conflicting research results have been reported. Therefore, the purpose of this study was (1) to standardize the extraction protocol and (2) to investigate FAA profiles in healthy young and healthy old volunteers, as well as in psoriasis and atopic dermatitis patients. <b><i>Methods:</i></b> Skin samples were collected from four groups (healthy young, healthy old, and psoriasis and atopic dermatitis patients) with 5 volunteers per group. Corneocytes were isolated and examined microscopically. FAAs and urea were extracted from the isolated corneocytes, and their amounts were quantified using LC-ESI/MS/MS (after derivatization with Fmoc-Cl) and colorimetric methods, respectively. <b><i>Results:</i></b> The micrographs of the corneocytes showed no morphological features attributable to age or disease conditions. The highest and lowest concentrations of total FAAs and urea were observed in the healthy old group and the healthy young group, respectively. Unlike the other FAAs and urea, citrulline was found at a higher level in the healthy young group than in the disease groups. <b><i>Conclusion:</i></b> This study suggests that the levels of FAAs and urea in the skin are affected by age and skin conditions (healthy/diseased). However, further studies are needed to show the effects of different skin conditions on the levels of FAAs and urea.
DOI: 10.6084/m9.figshare.7725206.v1
title: Supplementary Material for: Quantitative Analysis of Free Amino Acids and Urea Derived from Isolated Corneocytes of Healthy Young, Healthy Aged, and Diseased Skin

description: <b><i>Background/Aims:</i></b> Free amino acids (FAAs) and urea, present inside the corneocytes, can be important indicators of skin condition. However, due to the lack of a standard extraction protocol for FAAs from corneocytes, conflicting research results have been reported. Therefore, the purpose of this study was (1) to standardize the extraction protocol and (2) to investigate FAA profiles in healthy young and healthy old volunteers, as well as in psoriasis and atopic dermatitis patients. <b><i>Methods:</i></b> Skin samples were collected from four groups (healthy young, healthy old, and psoriasis and atopic dermatitis patients) with 5 volunteers per group. Corneocytes were isolated and examined microscopically. FAAs and urea were extracted from the isolated corneocytes, and their amounts were quantified using LC-ESI/MS/MS (after derivatization with Fmoc-Cl) and colorimetric methods, respectively. <b><i>Results:</i></b> The micrographs of the corneocytes showed no morphological features attributable to age or disease conditions. The highest and lowest concentrations of total FAAs and urea were observed in the healthy old group and the healthy young group, respectively. Unlike the other FAAs and urea, citrulline was found at a higher level in the healthy young group than in the disease groups. <b><i>Conclusion:</i></b> This study suggests that the levels of FAAs and urea in the skin are affected by age and skin conditions (healthy/diseased). However, further studies are needed to show the effects of different skin conditions on the levels of FAAs and urea.
DOI: 10.7284/122283
title: Speedlog data collected during research cruise AR4C using a JRC JLN-550 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7725161
title: Supplementary Material for: Isoliquiritigenin Attenuates Neuroinflammation in Traumatic Brain Injury in Young Rats

description: <b><i>Objectives:</i></b> Inflammation and apoptosis play a critical role in the pathological progress of traumatic brain injury (TBI). Isoliquiritigenin is a bioactive component extracted from licorice roots, which possesses anti-inflammatory and anti-apoptotic properties. This study aims to investigate the potential effects of isoliquiritigenin on neuroinflammation in a rat model of TBI. <b><i>Methods:</i></b> The SH-SY5Y cells were subjected to cell injury induced by shear stress and the effect of isoliquiritigenin on cell apoptosis was measured. Male rats received a controlled cortical impact to induce TBI and were then treated with isoliquiritigenin (20 mg/kg). Brain edema and contusion volume were measured to assess brain damage. Morris water maze, the beam-balance test, and the beam-walk test were performed to evaluate the cognitive and motor functions. <b><i>Results:</i></b> Levels of proinflammatory cytokines and apoptotic regulators were measured.<b><i></i></b> Results showed that isoliquiritigenin reduced shear stress-induced cell apoptosis in vitro. In young rats subjected to TBI, treatment of isoliquiritigenin reduced brain damage and attenuated motor and cognitive impairments. Isoliquiritigenin also reduced the level of proinflammatory cytokines and Bax and increased Bcl-2 and Bcl-xL in TBI rats. <b><i>Conclusions:</i></b> These findings suggest that<b><i></i></b> isoliquiritigenin possesses beneficial effects in TBI by inhibiting inflammation and apoptosis.
DOI: 10.6084/m9.figshare.7725182
title: An early Miocene dugongine (Sirenia: Dugongidae) from Panama

description: Herein, we describe a new early Miocene dugongine from marine deposits of the Culebra Cut (Gaillard Cut) of the Panama Canal. The new taxon, <i>Culebratherium alemani</i>, gen. et sp. nov., represents one of the few records of late Aquitanian–early Burdigalian sirenians and the oldest sirenian from Central America. A phylogenetic analysis places <i>Culebratherium</i> in a clade with <i>Dioplotherium</i> cf. <i>D. allisoni</i> (Miocene of Brazil), <i>Dioplotherium allisoni</i> (Miocene of Baja California Sur, Mexico, and California, U.S.A.), and <i>Dioplotherium</i> sp. (Pliocene of Yucatan, Mexico). Similar to these taxa, <i>Culebratherium</i> is characterized by the presence of large incisor tusks, a premaxillary symphysis without a boss, a premaxilla-frontal suture forming a butt joint, and a moderately downturned rostrum. In addition, <i>Culebratherium</i> exhibits prominent occipital-cervical attachment sites for enlarged neck musculature. These features taken together are interpreted as adaptations for uprooting large, deeply buried seagrass rhizomes. Other dugongines with similar, yet convergent, dental and facial adaptations are known from earlier or coeval deposits in Puerto Rico, Florida, South Carolina, California, Baja California Sur, Brazil, and India and were constituents of sympatric paleocommunities of sirenians. Only fragmentary evidence of a second smaller and unidentifiable sirenian species is known from the Culebra Formation, but future discoveries may reveal a similar sympatric paleocommunity during the early Miocene of Panama. Finally, we used the results of the phylogenetic analysis to propose the new clade Pan-Sirenia as the most inclusive group consisting of stem and crown groups and redefine the Sirenia, Dugongidae, and Dugonginae clades.
DOI: 10.6084/m9.figshare.7725182.v1
title: An early Miocene dugongine (Sirenia: Dugongidae) from Panama

description: Herein, we describe a new early Miocene dugongine from marine deposits of the Culebra Cut (Gaillard Cut) of the Panama Canal. The new taxon, <i>Culebratherium alemani</i>, gen. et sp. nov., represents one of the few records of late Aquitanian–early Burdigalian sirenians and the oldest sirenian from Central America. A phylogenetic analysis places <i>Culebratherium</i> in a clade with <i>Dioplotherium</i> cf. <i>D. allisoni</i> (Miocene of Brazil), <i>Dioplotherium allisoni</i> (Miocene of Baja California Sur, Mexico, and California, U.S.A.), and <i>Dioplotherium</i> sp. (Pliocene of Yucatan, Mexico). Similar to these taxa, <i>Culebratherium</i> is characterized by the presence of large incisor tusks, a premaxillary symphysis without a boss, a premaxilla-frontal suture forming a butt joint, and a moderately downturned rostrum. In addition, <i>Culebratherium</i> exhibits prominent occipital-cervical attachment sites for enlarged neck musculature. These features taken together are interpreted as adaptations for uprooting large, deeply buried seagrass rhizomes. Other dugongines with similar, yet convergent, dental and facial adaptations are known from earlier or coeval deposits in Puerto Rico, Florida, South Carolina, California, Baja California Sur, Brazil, and India and were constituents of sympatric paleocommunities of sirenians. Only fragmentary evidence of a second smaller and unidentifiable sirenian species is known from the Culebra Formation, but future discoveries may reveal a similar sympatric paleocommunity during the early Miocene of Panama. Finally, we used the results of the phylogenetic analysis to propose the new clade Pan-Sirenia as the most inclusive group consisting of stem and crown groups and redefine the Sirenia, Dugongidae, and Dugonginae clades.
DOI: 10.17637/rh.7725158
title: Data from "Contrasting effects of tree species and genetic diversity on the leaf miner communities associated with silver birch"

description: The data file "data tree level" includes the abundance of leaf miner species at the tree level, for both years and seasons within species and genetic diversity experiment. The data file "data plot level" includes the abundance of leaf miner species at the plot level, for both years and seasons within species and genetic diversity experiment. The abundance of miner species as well as miner species richness were obtained by using sample based rarefaction.
DOI: 10.7284/122135
title: Splitbeam Echosounder data collected during research cruise AR4C using a Kongsberg EK80 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17637/rh.7725158.v1
title: Data from "Contrasting effects of tree species and genetic diversity on the leaf miner communities associated with silver birch"

description: The data file "data tree level" includes the abundance of leaf miner species at the tree level, for both years and seasons within species and genetic diversity experiment. The data file "data plot level" includes the abundance of leaf miner species at the plot level, for both years and seasons within species and genetic diversity experiment. The abundance of miner species as well as miner species richness were obtained by using sample based rarefaction.
DOI: 10.7284/122287
title: SSV (Sound Speed Velocimeter) data collected during research cruise AR4C using a AML SmartX P1S2 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7725137
title: Total Gene Ontology Terms from Collembola interact with mycorrhizal fungi in modifying oak morphology, C and N incorporation and transcriptomics

description: Table S3: Total results of Gene Ontology terms over-representation analysis (FDR &lt; 0.01).
DOI: 10.7284/122282
title: Water Temperature data collected during research cruise AR4C using a Sea-Bird SBE-48 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7725137.v1
title: Total Gene Ontology Terms from Collembola interact with mycorrhizal fungi in modifying oak morphology, C and N incorporation and transcriptomics

description: Table S3: Total results of Gene Ontology terms over-representation analysis (FDR &lt; 0.01).
DOI: 10.6084/m9.figshare.7725098
title: Supplementary Material for: Current Status of p16 Immunohistochemistry and HPV Testing in Fine Needle Aspiration Specimens of the Head and Neck

description: Human papilloma virus (HPV)-related squamous cell carcinoma (SCC) is biologically unique and has a better prognosis than conventional SCC of the head and neck. p16 immunohistochemistry emerged as a valuable surrogate marker for HPV in oropharyngeal SCC. The criteria for a positive p16 result in tissue specimens are well established. However, there is no consensus regarding interpreting p16 staining in cell blocks and other cytology specimens. This review discusses the current evidence on p16 testing in cytology specimens and also highlights other methods for HPV testing, including DNA and RNA in situ hybridization, as well as other molecular HPV tests.
DOI: 10.7284/122281
title: TSG (Thermosalinograph) data collected during research cruise AR4C using a Sea-Bird SBE-45 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7725092
title: Visual Function in Mice Lacking GM3 Synthase

description: <b>Purpose</b>: Most complex gangliosides in vertebrates are formed from ganglioside GM3. GM3 deficiency in humans can result in epilepsy and visual impairment. To investigate whether a deficiency of GM3 is involved in visual function, ST3GAL5<sup>−/−</sup> mice with mutations in the ST3GAL5 gene-coded GM3 synthase were employed. <b>Materials and Methods</b>: Sixty mice were employed in this study. The glycosphingolipids of mice retinas were analyzed through high performance thin layer chromatography. The morphology of the optic nerves and retinas were evaluated by hematoxylin and eosin staining and immunohistochemical analysis using an anti-glial fibrillary acidic protein (GFAP) antibody. An electroretinogram (ERG) was applied on the eyes of 4, 9, 12, and 14-month-old mice. Also, visual evoked potential (VEP) was applied on 13-month-old mice. <b>Results</b>: The GM3 in the retinas was detected in ST3GAL5<sup>+/+</sup> mice but not ST3GAL5<sup>−/−</sup> mice. Also, GM1b and GD1α expressions and lactosylceramide accumulation were found in the ST3GAL5<sup>−/−</sup> mouse retinas. There was no significant difference in GFAP expression in the retinas or optic discs between ST3GAL5<sup>+/+</sup> and ST3GAL5<sup>−/−</sup> mice. Furthermore, the outcome of ERG and VEP analysis showed no disparity between the two strains in 13 and 14-month-old mice. <b>Conclusion</b>: In the eye, neither histopathological abnormalities nor abnormal functions of the retina were found in GM3-deficient mice. Differing from the situation in patients with GM3 deficiency, the lack of GM3 in mice did not lead to optic nerve atrophy.
DOI: 10.6084/m9.figshare.7725098.v1
title: Supplementary Material for: Current Status of p16 Immunohistochemistry and HPV Testing in Fine Needle Aspiration Specimens of the Head and Neck

description: Human papilloma virus (HPV)-related squamous cell carcinoma (SCC) is biologically unique and has a better prognosis than conventional SCC of the head and neck. p16 immunohistochemistry emerged as a valuable surrogate marker for HPV in oropharyngeal SCC. The criteria for a positive p16 result in tissue specimens are well established. However, there is no consensus regarding interpreting p16 staining in cell blocks and other cytology specimens. This review discusses the current evidence on p16 testing in cytology specimens and also highlights other methods for HPV testing, including DNA and RNA in situ hybridization, as well as other molecular HPV tests.
DOI: 10.7284/122296
title: Fluorometer data collected during research cruise AR5 using a WET Labs WETStar instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition