cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/3ss-9fz-rvg
title: Gypsum

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/exd-k3a-pcd
title: Quartz

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.648584.v1
title: CIL:1775

description: The purpose of the dataset C. elegans terminal bulb aging is to deduce the age of the nemathode based on images of the pharynx terminal bulb (part of the eating apparatus). Images of C. elegans were taken at different chronological ages. This image is part of the day 2 data set. Note that the morphological and chronological ages are not fully correlated due to the variability among individuals even though the individuals are genetically identical. The source for the dataset is Laboratory of Genetics/NIA/NIH.
DOI: 10.3535/7c7-2b7-pmr
title: Plantae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13655276.v1
title: The Materials Informatics Platform with Three-Dimensional Structures - A Materials Database Based on First-Principles Calculations

description: We present a large dataset of 3D materials. with more than 30,000 entries in the database, which contain the relaxed crystal structures, density of states, and band structures. Calculation of the equations of state and sound velocities is performed for over 12,000 entries. The electrical transport properties for approximately 4,400 entries are also calculated.
DOI: 10.6084/m9.figshare.26065606.v1
title: <b>Disentangling the drivers of urban bird diversity in the non-breeding season: a general synthesis</b>

description: Current knowledge about the impacts of urbanisation on bird assemblages is based on evidence from studies partly or wholly undertaken in the breeding season. In comparison, the non-breeding season remains little studied, despite the fact that winter conditions at higher latitudes are changing more rapidly than other seasons. During the non-breeding season, cities may attract or retain bird species because they offer milder conditions or better feeding opportunities than surrounding habitats. However, the range of climatic, ecological, and anthropogenic mechanisms shaping different facets of urban bird diversity in the non-breeding season are poorly understood. We explored these mechanisms using structural equation modelling to assess how urbanisation affects the taxonomic, phylogenetic, and functional diversity of avian assemblages sampled worldwide in the non-breeding season. We found that minimum temperature, elevation, urban area, and city age played a critical role in determining taxonomic diversity while a range of factors – including productivity, precipitation, elevation, distance to coasts and rivers, socio-economic (as a proxy of human facilitation), and road density – each contributed to patterns of phylogenetic and functional diversity. The structure and function of urban bird assemblages appear to be predominantly shaped by temperature, productivity, and city age, with effects of these factors differing across seasons. Our results underline the importance of considering multiple hypotheses, including seasonal effects, when evaluating the impacts of urbanisation on biodiversity.
DOI: 10.3535/bhr-0ps-1vs
title: Gypsum

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z7t-vjg-bde
title: Plantae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28665017.v1
title: Spatial lipidomics datasets on brain stroke samples measured by MALDI-MSI

description: Spatial lipidomics datasets on brain stroke samples at Day7 and Day28 measured by MALDI-MSI.
DOI: 10.3535/hkv-kmy-7m5
title: Plantae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7tk-1sd-zq5
title: Gypsum

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fxb-a4b-k7e
title: Gypsum

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.4121/uuid:e94ceb29-ff09-45a9-a845-d62ba0f0ba0e
title: Use of culverts in dikes in the floodplain

description: In order to investigate the effect of culverts in a dike during flood waves with the aim to mitigate the effects of high water, experiments have been done on the discharge capacity of culverts in a dike. The dataset consist of velocity measurements and water levels for various configurations.
DOI: 10.6084/m9.figshare.23982744.v1
title: Phylogenetic trees and SNP matrices from: <i>Malacothamnus</i> Volume 2 - A Phylogenetic Assessment of Taxonomic Boundaries in the Genus <i>Malacothamnus</i>

description: Phylogenetic trees with SNP matrices used to generate them from: <i>Malacothamnus</i> Volume 2 - A Phylogenetic Assessment of Taxonomic Boundaries in the Genus <i>Malacothamnus</i>Trees and SNP matrices are combined in Nexus files following TreeBASE formatting requirements. See SRA Genbank PRJNA928782 for raw data.
DOI: 10.6084/m9.figshare.27183531.v1
title: Source Data for paper "Membrane Lipid Nanodomains Modulate HCN Pacemaker Channels in Nociceptor DRG Neurons"

description: Lipid domains, particularly detergent-resistant, ordered membrane domains (OMDs), form specialized compartments within cell membranes that play critical roles in cell signaling. OMDs, rich in cholesterol and sphingolipids, vary in size and are dynamic, adapting to physiological changes. Techniques like super-resolution microscopy and cryo-electron tomography have revealed their structure, though much remains unknown.Lipid domains are implicated in various biological processes, including Alzheimer's disease, viral infections, inflammation, and neuropathic pain. Notably, in models of chemotherapy-induced neuropathy and arthritis, targeting these domains has alleviated symptoms, suggesting potential for therapeutic interventions.Hyperpolarization-activated cyclic nucleotide-gated (HCN) channels, particularly HCN2, regulate neuronal excitability and are linked to chronic pain. These channels localize within OMDs, and their function is modulated by lipid domain composition. Disruption of OMDs in nociceptor neurons enhances action potential firing and is associated with increased HCN channel activity, contributing to neuropathic pain. The study highlights the importance of lipid domains in modulating HCN channels, suggesting that their disruption may be a key mechanism in neuropathic pain development.
DOI: 10.6084/m9.figshare.7028270.v1
title: 2-phase stationary minimiser vs gradient flow end-state comparisons (Set 1)

description: 2-phase stationary minimiser vs gradient flow end-state comparisons (Set 1); compare the energies of these.
DOI: 10.3535/89m-48a-9dq
title: Plantae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/c6v-09l-a35
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/69b-6qx-jfj
title: Gypsum

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.c.3794752_d1.v1
title: Additional file 1: Table S1. of Changes in the neuropeptide content of Biomphalaria ganglia nervous system following Schistosoma infection

description: Identification and quantification of neuropeptide precursor proteins from non-infected/S. mansoni-infected CNS of B. glabrata; the identification of genome or transcriptome-derived proteins and protein annotations. (XLSX 197Â kb)
DOI: 10.3535/epr-344-q35
title: Plantae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.c.3646577_d5.v1
title: Additional file 10: of Spatial reorganization of telomeres in long-lived quiescent cells

description: Full resolution contact map binned at 10 RF of G0 population presented in Fig. 3 . (DAT 16.3 mb)
DOI: 10.3535/6pg-brw-r45
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/b6y-54r-a82
title: Plantae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14411063.v1
title: Major, volatile, and trace elements, and Fe speciation, of glass samples from SWIR 48-51°E

description: The basaltic glass samples were collected along the axis of the SWIR during the R/V Dayangyihao cruises DY125-30 and DY125-34 via TV grab. Most of the retrieved samples do not contain glass, but nine basalt samples contain glassy quenched rims (&lt;5 vol% plagioclase phenocrysts) and these are the subjects of our study. From each of the nine glassy lavas, we selected at least three glass chips for analysis. Each chip was analyzed for major elements plus S and Cl by Electron probe micro-analyzer (EPMA), for dissolved H2O and CO2 by Fourier-transform infrared spectroscopy (FTIR), for trace elements by laser ablation-inductively coupled plasma-mass spectrometry (LA-ICP-MS), and for Fe3+/∑Fe ratios by X-ray absorption near edge structure (XANES) spectroscopy.
DOI: 10.6084/m9.figshare.14806215.v1
title: mSystems00602-21-Table_S7.xlsx

description: mSystems00602-21-Table_S7:Functional complementation between symbiotic DPANN archaea and their confirmed hosts: (a) Nanoarchaeum equitans and Ignicoccus hospitalis; (b) Candidatus Mancarchaeum acidiphilum and Cuniculiplasma divulgatum. (c) Genes in genomes of DPANN hosts that putatively transferred from DPANN archaea.<br>
DOI: 10.17632/2vgx4ms633
title: A program to analyze series of Mössbauer spectra

description: Title of program: MOSAUT AND MOSINP Catalogue Id: ACEG_v1_0 Nature of problem Analyze a series of Mossbauer spectra by fitting them to a function, describing the physical relations between the Lorentzians and depending on parameters of which some are freely adaptable within given limits, some adaptable within limits but required to be identical for all spectra, and some constant. Versions of this program held in the CPC repository in Mendeley Data ACEG_v1_0; MOSAUT AND MOSINP; 10.1016/0010-4655(83)90069-3 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.3535/2v1-xwn-ea9
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7jk-7qk-9a1
title: Plantae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8ps-2rl-q3j
title: Plantae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26403511.v1
title: Research data for article 'Influence of Bis(2,2,2-Trifluoroethyl) Carbonate Flame Retarding Co-Solvent on Interfacial Chemistry in Carbonate Ester Lithium-Ion Battery Electrolytes'

description: The dataset includes electrochemical testing data, and data from X-ray photoelectron spectroscopy measurements. Experimental methodologies are provided in the article.
DOI: 10.3535/6q3-brt-8c2
title: Plantae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wlw-lmd-56t
title: Barite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27222687.v1
title: Factors associated with clinically meaningful recovery in body function, activity, and participation after upper limb task-oriented training in people with stroke

description: <b>Introduction:</b>This study investigated upper extremity (UE) recovery predictors in post-stroke patients undergoing task-oriented training (TOT) rehabilitation. The retrospective analysis utilized data from a randomized controlled trial (NCT03019744) conducted at the Don Gnocchi Foundation hospitals in Italy between 2011 and 2015. The trial compared TOT alone with TOT combined with functional electrical stimulation (FES). Ethical approval was obtained, and all participants provided informed consent.<b>Methods:</b><b>Participants:</b> Data were pooled from both arms of the original RCT (TOT + FES and TOT alone) as both groups received TOT, and no significant difference was found between them.<b>Intervention:</b> Participants received 25 sessions of TOT (45 minutes each, five days/week) as an adjunct to standard therapy. TOT focused on functional tasks with real-life objects and was progressively adapted to individual needs.<b>Outcome Measures:</b><b>Fugl-Meyer Assessment - Upper Extremity (FMA-UE):</b> To assess impairment (ICF body function domain).<b>15-item Action Research Arm Test (ARAT-15):</b> To assess activity/performance (ICF activity domain).<b>Quick version of the Disability of the Arm, Shoulder, and Hand questionnaire - 9 items (Q-DASH-9):</b> To assess participation restrictions (ICF participation domain).<b>Predictor Variables:</b> Age, sex (i.e., male, female), dominance of the affected side (affected bodyside; i.e., dominant; non-dominant), chronicity (i.e., chronic; subacute), injury typology (i.e., ischemic; hemorrhagic), injury localization (i.e., cortical; sub-cortical), and baseline scores on the FMA-UE, ARAT-15, and Q-DASH-9.<b>Data Analysis:</b>Descriptive statistics were used to summarize data.Wilcoxon signed-rank test was used to compare pre- and post-intervention scores.Effect sizes were calculated using matched-pairs rank-biserial correlation.Participants were classified as "Responders" or "Non-responders" based on achieving minimally clinically important differences (MCID) in outcome measures.Stepwise binary logistic regression models were developed to identify predictors of responder status. A bidirectional approach was employed, starting with an empty model. Predictors were added (forward selection) or removed (backward elimination) one at a time based on whether their inclusion improved the Akaike information criterion (AIC). Model accuracy was assessed using McFadden’s pseudo-R2, Scaled Brier Score, Receiver Operating Characteristic curve (AUC), and Hosmer–Lemeshow test.Subgroup sensitivity analysis was performed to assess model robustness.
DOI: 10.6084/m9.figshare.28405769.v1
title: Raw data for MaMsb2.xlsxSupplemental materials for MaMsb2, a signaling mucin, is involved in conidiation, stress tolerances, and virulence in the entomopathogenic fungus Metarhizium acridum

description: <b>Background:</b> The signal transduction mucin Msb2 initiates the signal transduction response in the HOG pathway and participates in the infection and pathogenesis of fungal pathogens. <i>Metarhizium acridum</i>, an entomopathogenic fungus, is a promising biopesticide for agricultural, forestry, and urban pest control. This study focuses on the characterization of MaMsb2 in <i>M. acridum</i>.<br><b>Materials and Methods: </b>Gene expression profiles of <i>MaMsb2</i> in <i>M. acridum</i> were analyzed using RT-qPCR. Knockout strain of <i>MaMsb2</i> was constructed via homologous recombination, and the Δ<i>MaMsb2</i> complementation strain was constructed via ectopic insertion. Their phenotypic characteristics were examined. The conidial germination rates and conidial yield of different fungal strains were ascertained on 1/4 SDAY. The fungal tolerances to UV-B radiation and heat stress was evaluated. Fungal virulence was evaluated using the fifth instar nymphs of <i>Locusta migratoria manilensis</i>, and infection structures formation and penetration ability were assessed on locust hind wings.<br><b>Results: </b>Disruption of <i>MaMsb2</i> resulted in the delayed conidial germination, the increased conidial yield owing to the changed conidiation pattern, the reduced tolerances to multiple stresses, the decreased virulence because of the impairments of appressorium formation and the growth of <i>M. acridum</i> in the hemolymph of locusts. RNA-seq showed that MaMsb2 governed the appressorium formation of <i>M. acridum</i> by mediating the expression of related genes such as conidial adhesion, appressorium formation, and host cuticle penetration.<br><b>Conclusion:</b> MaMsb2 is crucial for fungal conidiation, stress tolerances, virulence in <i>M. acridum</i>, playing essential roles in infection structures formation, penetration. Understanding its functions provides insights into the pathogenic mechanisms of insect pathogenic fungi.
DOI: 10.3535/zpt-mt1-482
title: Plantae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.4460562
title: Koranic Science with Persian Poems [IO Islamic 2165]

description: al-Qurʼān القرآن الكريم
	
This manuscript is now IO Islamic 2165 in the India Office collections.
	
[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 47 here with further notations and hyperlinks].



47.


2165. Size 91/2 in. by 53/4 in.; foll. 92. Seventeen lines in a page.


کتاب سجاوندي مسمي بوقوفي


Another copy of the preceding work, well written. The following Persian couplet is written twice at the beginning:


بفهم آیت بصری و کوفی


وقوفی خوب میخواهد وقوفی


نیک


At the end the following tetrastich:


روزیکه روح دامنِ عمرم رها کند


وین خاکِ تیره بند زبندم جدا کند


یا رب نگاهدار تو ایمان آنکسی


کین خطّ من بخواند و بر من دعا کند


The seal of the Muḥammad Nadîm Allah (A.H. 1180), with several Persian Poems of his; an explanation of the different kinds of pauses and their signs, in Persian couplets; a dialogue between Abu Bakr and ‘Alî, intended to show the equality of their dignity; and various other notes are on the blank pages at the beginning and end.


[Coll. Fort William, 1825.]
DOI: 10.5281/zenodo.4460563
title: Koranic Science with Persian Poems [IO Islamic 2165]

description: al-Qurʼān القرآن الكريم
	
This manuscript is now IO Islamic 2165 in the India Office collections.
	
[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 47 here with further notations and hyperlinks].



47.


2165. Size 91/2 in. by 53/4 in.; foll. 92. Seventeen lines in a page.


کتاب سجاوندي مسمي بوقوفي


Another copy of the preceding work, well written. The following Persian couplet is written twice at the beginning:


بفهم آیت بصری و کوفی


وقوفی خوب میخواهد وقوفی


نیک


At the end the following tetrastich:


روزیکه روح دامنِ عمرم رها کند


وین خاکِ تیره بند زبندم جدا کند


یا رب نگاهدار تو ایمان آنکسی


کین خطّ من بخواند و بر من دعا کند


The seal of the Muḥammad Nadîm Allah (A.H. 1180), with several Persian Poems of his; an explanation of the different kinds of pauses and their signs, in Persian couplets; a dialogue between Abu Bakr and ‘Alî, intended to show the equality of their dignity; and various other notes are on the blank pages at the beginning and end.


[Coll. Fort William, 1825.]
DOI: 10.6084/m9.figshare.11734464.v2
title: Clinical featuresof DTC patients from the TCGA-THCA data set

description: TCGA-THCA数据对DTC患者的临床特征
DOI: 10.3535/32w-0lk-1m3
title: Plantae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3tc-cd6-fv9
title: Gypsum

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25521331.v1
title: Effects of forest disturbances and an introduced ungulate on carbon storage in boreal forests

description: Datasets and code for Moran et al., [in revision]. Effects of forest disturbances and an introduced ungulate on carbon storage in boreal forests.
DOI: 10.6084/m9.figshare.28500593.v2
title: Fishing Out Nutrients - Nutrient Extraction Data

description: This zipped (7z) folder contains the distribution matrices generated for estimating nutrient extractions in the manuscript titled: <i>Fisheries disrupt marine nutrient cycles through biomass extraction</i> by González Ortiz et al. 2025. The Sea Around Us database (https://www.seaaroundus.org/) contains total catches (tonnes year<sup>-1</sup>) for each species and taxonomic group caught in an EEZ or high seas region between 1960 and 2018 resulting in a catch database of over 6.7 million entries. For each entry’s species/taxonomic group, we randomly sampled 100 composition values for each nutrient (carbon, nitrogen, and phosphorus) from a normal distribution characterized by each species/taxonomic group’s mean nutrient compositions and standard deviations. These 100 random composition values were then multiplied by the total landed amount, as reported by the Sea Around Us, to generate 100 estimates of nutrient extraction for each entry in the catch database. These 100 estimates for each nutrient are contained within the three large CSV files in the zipped folder.From these 100 estimates of nutrient extractions, we took the mean as the estimated carbon, nitrogen, and phosphorus extraction values for each of the 6.7 million entries in the database.
DOI: 10.17028/rd.lboro.15135195.v1
title: Supplementary Information files for Synthesis and characterisation of transition metal complexes of a novel 1,5‐benzodiazepine‐functionalised tertiary phosphine

description: Supplementary Information files for Synthesis and characterisation of transition metal complexes of a novel 1,5‐benzodiazepine‐functionalised tertiary phosphine<br><br>The one-step synthesis (44% isolated yield) of the 1,5- benzodiazapine functionalised phosphine 1, C31H31N2OP, is reported. Bridge cleavage of {MCl(μ-Cl)(η5 -Cp*)}2 (M=Ir, Rh) with 2 equiv. of 1 in CH2Cl2 gave the mononuclear compounds [MCl2(η5 -Cp*)(P-1)] (M=Ir, 2a; M=Rh, 2b) in which 1 functions as a P-monodentate ligand. Rapid C(sp3 ) H bond activation, at room temperature, is observed for 2a leading to the unusual cyclometallated complex [Ir(η5 -Cp*)(P,N,C-1)]Cl2 3 (or 3‘) bearing an anionic P/Namine/C-terdentate ligand. Reaction of [Pt(CH3) Cl(η4 -cod)] with one equiv. of 1 led to [Pt(CH3)Cl(P,N-1)] 4, suggesting that 3 may form via an intermediate IrIII cationic species in which the ligand is P,N-bound. The IrI complex [IrCl (η4 -cod)(P-1)] 5 does not, under similar conditions, show any evidence for C H activation. Single crystal X-ray studies on 1, 2a, 2b, 3, 3‘, 4, and 5 reveal intramolecular N···H O H-bonding in all cases.<br><br>
DOI: 10.3535/8nc-v0s-j7y
title: Gypsum

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12904385.v1
title: Metadata for Spatio-temporal assessment of GHG emissions and nutrient sequestration linked to agronutrient runoff in global wetlands

description: We distribute the output data from our global simulation of wetlands affected by agricultural runoff. The computational domain involves about 25,000 grid cells globally distributed describing the wetlands, and neglects lakes, rivers, rice paddies, saline estuaries, salt marshes, and reservoirs (Poulter et al., 2017). We include 14 maps and videos for the principal greenhouse gasses GHG (CH<sub>4</sub>, CO<sub>2</sub>, and N<sub>2</sub>O), wetland extension area, soil temperature, soil moisture, long-term average soil pH, carbon input, long-term average annual carbon, long-term average soil carbon, nitrogen, and sulfur sequestration rate. This data release includes also the following plant-dependent variables: CH<sub>4</sub> plant emission efficiency for aerenchyma transport, C:N and C:S ratio of litter in grassland, forest, and shrubland, N<sub>2</sub> fixation rate in grassland, forest, shrubland, and wetland, and the average root density for forest, grassland, shrublands, and wetland.
DOI: 10.6084/m9.figshare.15023355.v1
title: Marker Matrix M1

description: 2514 loblolly pine genotypes are scored with 29135 SNP markers from the Pita50K Affymetrix chip.
DOI: 10.3535/281-wzj-cjy
title: Plantae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/e2w-mke-7bd
title: Gypsum

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.