cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/m4dwe-c4k53
title: FtsZG109SFzlC double o/e

description: Raw data files of FtsZG109SFzlC double o/e
description: <strong>Tilt Series Date:</strong> 2008-12-01</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Strain EG426 was constructed by Erin Goley, data collected and processed by Zhuo Li</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The cell was first induced by vanillate (FtsZG109S) for 3 hours and then added with xylose (FzlC). The objective was to see how FzlC modulates preformed FtsZ filaments in the background of overexpressed FtsZG109S filaments.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-12-01-11/rawdata/</p>FtsZ109FzlCoebx9812020834K200e002.st,  Tilt Series (Pixel Size 0.644 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-12-01-11/rawdata/FtsZ109FzlCoebx9812020834K200e002.st"
        > <i class="download icon"></i> Download </a></p>

        FtsZ109FzlCoebx9812020834K200e0021K.rec,  Reconstruction (Pixel Size 1.288 nm), 201.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-12-01-11/3dimage_3870/FtsZ109FzlCoebx9812020834K200e0021K.rec"
        > <i class="download icon"></i> Download </a></p>

        FtsZ109FzlCoebx9812020834K200e0021K_full.rec,  Reconstruction (Pixel Size 1.288 nm), 629.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-12-01-11/3dimage_3871/FtsZ109FzlCoebx9812020834K200e0021K_full.rec"
        > <i class="download icon"></i> Download </a></p>

        dbFtsZ109FzlCoebx9812020834K200e0021K.mrc,  Reconstruction (Pixel Size 1.288 nm), 201.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/zywgb-73m53
title: EIAV cores

description: EIAV cores, single axis e, total dose 120 e/A2
description: <strong>Tilt Series Date:</strong> 2005-05-19</p>
<strong>Data Taken By:</strong> Elizabeth Wright</p>
<strong>Species / Specimen:</strong> EIAV cores</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: 8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
<strong>Collaborators and Roles:</strong> N/A</p>
<strong>Purification / Growth Conditions / Treatment:</strong> prepared by the Sundquist lab</p>
<strong>Sample Preparation:</strong> R0.6/1 quantifoil, 10 nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ewr2005-05-19-8/rawdata/</p>ecore_20050519_d_neg.mrc,  Tilt Series (Pixel Size 5.6 nm), 302.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ewr2005-05-19-8/rawdata/ecore_20050519_d_neg.mrc"
        > <i class="download icon"></i> Download </a></p>

        ecore_20050519_d_pos.mrc,  Tilt Series (Pixel Size 5.6 nm), 302.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ewr2005-05-19-8/rawdata/ecore_20050519_d_pos.mrc"
        > <i class="download icon"></i> Download </a></p>

        ecore_20050519_e_neg.mrc,  Tilt Series (Pixel Size 5.6 nm), 302.1 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        ecore_20050519_e_pos.mrc,  Tilt Series (Pixel Size 5.6 nm), 302.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ewr2005-05-19-8/rawdata/ecore_20050519_e_pos.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/v60we-fc945
title: T. intermedia autotrophic 4 hrs

description: T. intermedia cell h4 grown in autotrophic conditions for 4 hours
description: <strong>Tilt Series Date:</strong> 2007-11-27</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Thiomonas intermedia</p>
<strong>Strain:</strong> K12</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 170.0 eV/Å²,  defocus: -13.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth in autotrophic conditions for 4 hours</p>
  civ2007-11-27-5_slicer7697.jpg: Thiomonas intermedia .  dividing civ2007-11-27-5_slicer7698.jpg: Thiomonas intermedia .  REZ ribosome exclusion zone
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-27-5/rawdata/</p>Ti_a4h_h4_170e13um18K_27nov07.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        Ti_a4h_h4_170e13um18K_27nov07_bin2.rec,  Reconstruction (Pixel Size 0.0 nm), 154.0 MB  
        
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        Ti_a4h_h4_170e13um18K_27nov07_bin2_s76.tif,  2.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        civ2007-11-27-5_slicer19166.png,  unambiguous REZ .  (The REZ near the cell pole could be something different.) .  -andrew, 717.5 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/Caps/civ2007-11-27-5_slicer19166.png"
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DOI: 10.22002/xnzy6-b7z85
title: T. intermedia autotrophic 2 hrs

description: T. intermedia cell h3 grown in autotrophic conditions for 2 hours
description: <strong>Tilt Series Date:</strong> 2007-11-26</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Thiomonas intermedia</p>
<strong>Strain:</strong> K12</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -13.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth in autotrophic conditions for 2 hours</p>
  civ2007-11-26-1_slicer7675.jpg: Thiomonas intermedia .  pili civ2007-11-26-1_slicer7676.jpg: Thiomonas intermedia .  s-layer civ2007-11-26-1_slicer7678.jpg: Thiomonas intermedia .  filament civ2007-11-26-1_slicer7679.jpg: Thiomonas intermedia .  filament
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-26-1/rawdata/</p>Ti_a2h_h3_150e13um18K_26nov07.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-26-1/rawdata/Ti_a2h_h3_150e13um18K_26nov07.mrc"
        > <i class="download icon"></i> Download </a></p>

        Ti_a2h_h3_150e13um18K_26nov07_bin2.rec,  Reconstruction (Pixel Size 0.0 nm), 163.6 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        Ti_a2h_h3_150e13um18K_26nov07_bin2_s100_cbxy.tif,  2.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-26-1/file_1736/Ti_a2h_h3_150e13um18K_26nov07_bin2_s100_cbxy.tif"
        > <i class="download icon"></i> Download </a></p>

        civ2007-11-26-1_slicer16663.png, , 577.5 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/Caps/civ2007-11-26-1_slicer16663.png"
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DOI: 10.22002/zgqdh-zhr35
title: Mesoplasma florum dual axis

description: Mesoplasma florum, dual axis, total dose 110 e/A2 - 3
description: <strong>Tilt Series Date:</strong> 2004-11-18</p>
<strong>Data Taken By:</strong> Elizabeth Wright</p>
<strong>Species / Specimen:</strong> Mesoplasma florum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Dual Axis, tilt range: (-70.0°, 70.0°), step: 1°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: 25.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
<strong>Collaborators and Roles:</strong> N/A</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Overnight culture in Mycoplasma media</p>
<strong>Sample Preparation:</strong> R2/2 quantifoil, 10 nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ewr2004-11-18-2/rawdata/</p>3mf_22k25_pp5.mrc,  Tilt Series (Pixel Size 0.961 nm), 562.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ewr2004-11-18-2/rawdata/3mf_22k25_pp5.mrc"
        > <i class="download icon"></i> Download </a></p>

        3mf_22k30_mp5.mrc,  Tilt Series (Pixel Size 0.961 nm), 562.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ewr2004-11-18-2/rawdata/3mf_22k30_mp5.mrc"
        > <i class="download icon"></i> Download </a></p>

        mf3_22k25_mp6.mrc,  Tilt Series (Pixel Size 0.961 nm), 570.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ewr2004-11-18-2/rawdata/mf3_22k25_mp6.mrc"
        > <i class="download icon"></i> Download </a></p>

        mf3_22k25_pp6.mrc,  Tilt Series (Pixel Size 0.961 nm), 528.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ewr2004-11-18-2/rawdata/mf3_22k25_pp6.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/1kd6w-m6863
title: Rhodopseudomonas palustrus

description: Fe-metabolizing bacterium that makes parallel membrane sheets for photosynthesis.  Membrane topology is the primary interest.Keywords: photosynthetic membrane sheets, parallel membranes
description: <strong>Tilt Series Date:</strong> 2007-10-04</p>
<strong>Data Taken By:</strong> Bill Tivol</p>
<strong>Species / Specimen:</strong> Rhodopseudomonas palustris</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1 deg°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Diane Newman, PI, Lars Dietrich, Postdoc, Lars gave me the specimens</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown in FEM medium +10% acetate at 30 deg C in bright light.</p>
<strong>Sample Preparation:</strong> quantifoil, 10 nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/btf2007-10-04-5/rawdata/</p>Rp4Oct07_10.mrc,  Tilt Series (Pixel Size 0.625 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/btf2007-10-04-5/rawdata/Rp4Oct07_10.mrc"
        > <i class="download icon"></i> Download </a></p>

        Rp4Oct07_10_full.rec,  Reconstruction (Pixel Size 1.25 nm), 1.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/btf2007-10-04-5/3dimage_472/Rp4Oct07_10_full.rec"
        > <i class="download icon"></i> Download </a></p>

        Rp4Oct07_10.rec,  Reconstruction (Pixel Size 1.25 nm), 287.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/btf2007-10-04-5/3dimage_473/Rp4Oct07_10.rec"
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        Rp4Oct07_10fil.rec,  Reconstruction (Pixel Size 1.25 nm) median filtered, 287.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/btf2007-10-04-5/3dimage_474/Rp4Oct07_10fil.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.rj8wz3
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Corbicula fluminea",
 "Country is Bulgaria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 31 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033035-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/jhgcv-m6c84
title: EIAV cores

description: EIAV cores, dual axis c, total dose 120 e/A2
description: <strong>Tilt Series Date:</strong> 2005-05-18</p>
<strong>Data Taken By:</strong> Elizabeth Wright</p>
<strong>Species / Specimen:</strong> EIAV cores</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Dual Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: 8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
<strong>Collaborators and Roles:</strong> N/A</p>
<strong>Purification / Growth Conditions / Treatment:</strong> prepared by the Sundquist lab</p>
<strong>Sample Preparation:</strong> R0.6/1 quantifoil, 10 nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ewr2005-05-18-2/rawdata/</p>cores_41kx_4um_2005May18_pos5a_c.mrc,  Tilt Series (Pixel Size 5.6 nm), 268.6 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        cores_41kx_4um_2005May18_pos5b_c.mrc,  Tilt Series (Pixel Size 5.6 nm), 293.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        cores_20050518_c_pos6-.mrc,  Tilt Series (Pixel Size 5.6 nm), 277.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ewr2005-05-18-2/rawdata/cores_20050518_c_pos6-.mrc"
        > <i class="download icon"></i> Download </a></p>

        cores_20050518_c_pos6+.mrc,  Tilt Series (Pixel Size 5.6 nm), 268.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ewr2005-05-18-2/rawdata/cores_20050518_c_pos6+.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.2vsn26
title: Occurrence Download

description: A dataset containing 20056 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is one of (Chile, Argentina)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Scytalopus magellanicus",
 "Year 1970-2025"
 ]
}

 The dataset includes 20056 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033034-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/3dkvw-qvf89
title: Mesoplasma florum dual axis

description: Mesoplasma florum, dual axis, total dose 110 e/A2 - 4
description: <strong>Tilt Series Date:</strong> 2004-11-18</p>
<strong>Data Taken By:</strong> Elizabeth Wright</p>
<strong>Species / Specimen:</strong> Mesoplasma florum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Dual Axis, tilt range: (-70.0°, 70.0°), step: 1°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: 20.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
<strong>Collaborators and Roles:</strong> N/A</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Overnight culture in Mycoplasma media</p>
<strong>Sample Preparation:</strong> R2/2 quantifoil, 10 nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ewr2004-11-18-3/rawdata/</p>4mf_22k20_mp6.mrc,  Tilt Series (Pixel Size 0.961 nm), 562.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ewr2004-11-18-3/rawdata/4mf_22k20_mp6.mrc"
        > <i class="download icon"></i> Download </a></p>

        4mf_22k20_pp6.mrc,  Tilt Series (Pixel Size 0.961 nm), 562.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ewr2004-11-18-3/rawdata/4mf_22k20_pp6.mrc"
        > <i class="download icon"></i> Download </a></p>

        mf_4_22k20_mp5.mrc,  Tilt Series (Pixel Size 0.961 nm), 553.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ewr2004-11-18-3/rawdata/mf_4_22k20_mp5.mrc"
        > <i class="download icon"></i> Download </a></p>

        mf_4_22k20_pp5.mrc,  Tilt Series (Pixel Size 0.961 nm), 562.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ewr2004-11-18-3/rawdata/mf_4_22k20_pp5.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/y4r57-m1j62
title: FzlC-FtsZG109S o/e

description: division site
description: <strong>Tilt Series Date:</strong> 2008-10-29</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-62.0°, 62.0°), step: °, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, IMOD</p>
<strong>Collaborators and Roles:</strong> Strain EG426 was constructed by Erin Goley. Data collected and processed by Zhuo Li.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The cells were first induced by xylose (FzlC) for 11 hours, and then added with vanillate (FtsZG109S), and continued to grow for 3 hours.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-10-29-2/rawdata/</p>08oct29a_bx719_002.mrc,  Tilt Series (Pixel Size 0.644 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-10-29-2/rawdata/08oct29a_bx719_002.mrc"
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        08oct29a_bx719_002_full.rec,  Reconstruction (Pixel Size 1.288 nm), 1.3 GB  
        
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        08oct29a_bx719_0021K_full.rec,  Reconstruction (Pixel Size 1.288 nm), 499.1 MB  
        
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        08oct29a_bx719_0021K.rec,  Reconstruction (Pixel Size 1.288 nm), 105.9 MB  
        
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