cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zs8abn
title: Occurrence Download

description: A dataset containing 575314 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kenya",
 "Geometry POLYGON((33.83105 -1.18305,36.73902 -2.86661,36.76453 -1.48915,34.70685 -0.01816,34.03512 -0.07768,33.83105 -1.18305))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 1812-2024"
 ]
}

 The dataset includes 575314 records from 258 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038047-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3630560_d8.v1
title: Additional file 5: of Deciphering the signaling mechanisms of the plant cell wall degradation machinery in Aspergillus oryzae

description: List of significant genes expressing Carbohydrate Active enzymes (CAZy) and associated genes with same regulation profile. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3630572_d5.v1
title: Additional file 8: Table S6. of Multiethnic genome-wide association study identifies ethnic-specific associations with body mass index in Hispanics and African Americans

description: Average BMI by genotype for rs12255372 in MESA and WHI Hispanics. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3630572_d6.v1
title: Additional file 11: Table S9. of Multiethnic genome-wide association study identifies ethnic-specific associations with body mass index in Hispanics and African Americans

description: Evaluation of heterogeneity of SNP effects by sex for top MESA Hispanic and African American SNPs (p
DOI: 10.6084/m9.figshare.c.3630572_d7.v1
title: Additional file 10: Table S8. of Multiethnic genome-wide association study identifies ethnic-specific associations with body mass index in Hispanics and African Americans

description: Meta-analysis for top candidate SNP in MESA Hispanics, African Americans, and European Americans. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3630596_d1.v1
title: Additional file 3: of Human extraintestinal pathogenic Escherichia coli strains differ in prevalence of virulence factors, phylogroups, and bacteriocin determinants

description: Table S3. Detection of individual bacteriocin determinants in ExPEC and fecal bacteriocin producers within less virulent phylogenetic groups A + B1 compared to more virulent phylogroups B2 + D. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3630770_d2.v1
title: MOESM3 of Genome architecture of Lactobacillus plantarum PS128, a probiotic strain with potential immunomodulatory activity

description: Additional file 3: Figure S3. ARDB search result.
DOI: 10.6084/m9.figshare.c.3630767_d8.v1
title: Additional file 16: of Survey of cryptic unstable transcripts in yeast

description: Primers Used for RT-qPCR. RT-qPCR primer names and sequences. Primers are specific to either S.cerevisiae (S.cere) or S.paradoxus (S.para), but in some cases could be used in either species background. All primers were named for the nearest or overlapping gene annotation. Those primers labeled “–T” denote the presence of the unique 5′ tagged used for strand-specificity in RT reactions. An asterisk in the final column denotes candidates not requiring strand-specific RT-qPCR; for these candidates qPCR was performed on random hexamer primed cDNA (see Methods). (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3630767_d10.v1
title: Additional file 5: Table S1. of Survey of cryptic unstable transcripts in yeast

description: 4x Conserved CUT Annotations. A table containing the strain-specific genomic coordinates for all 855 4x conserved CUTs identified in this study. (XLSX 134Â kb)
DOI: 10.6084/m9.figshare.c.3630803_d1.v1
title: Additional file 1: of ATRX immunostaining predicts IDH and H3F3A status in gliomas

description: Overview of ATRX staining results in tissue microarrays and full slides in the same tumors. (XLS 36 kb)
DOI: 10.6084/m9.figshare.c.3630803_d2.v1
title: Additional file 2: of ATRX immunostaining predicts IDH and H3F3A status in gliomas

description: Additional statistical data for IDH, MGMT, WHO, 1p/19q codeletion, age and diagnosis. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.28049819
title: Delonix regia raw GC-MS files

description: Metabolite extraction from Delonix regia leaf tissue
DOI: 10.6084/m9.figshare.28049819.v1
title: Delonix regia raw GC-MS files

description: Metabolite extraction from Delonix regia leaf tissue
DOI: 10.6084/m9.figshare.c.3631244_d1.v1
title: Additional file 1: of Factors related to non-compliance to HPV vaccination in Roraima—Brazil: a region with a high incidence of cervical cancer

description: Spreadsheet containing raw data of this study. (XLS 1492 kb)
DOI: 10.6084/m9.figshare.c.3631247_d1.v1
title: Additional file 2: of MicroRNA Expression in Formalin-fixed Paraffin-embedded Cancer Tissue: Identifying Reference MicroRNAs and Variability

description: Dataset S1: MiRNA expression in colorectal cancer samples. (Microsoft Excel spreadsheet) (XLSX 412 kb)
DOI: 10.6084/m9.figshare.c.3631247_d3.v1
title: Additional file 3: of MicroRNA Expression in Formalin-fixed Paraffin-embedded Cancer Tissue: Identifying Reference MicroRNAs and Variability

description: Dataset S2. MiRNA expression in pancreatic cancer samples. (Microsoft Excel spreadsheet) (XLSX 355 kb)
DOI: 10.6084/m9.figshare.c.3631274_d1.v1
title: Additional file 1: of Functional morphology of giant mole crab larvae: a possible case of defensive enrollment

description: Descriptive matrix of specimen A (ZMUC-CRU-8679). (XLS 39 kb)
DOI: 10.6084/m9.figshare.c.3631247_d4.v1
title: Additional file 4: of MicroRNA Expression in Formalin-fixed Paraffin-embedded Cancer Tissue: Identifying Reference MicroRNAs and Variability

description: Dataset S3. MiRNA expression in methodological samples. (Microsoft Excel spreadsheet) (XLSX 75 kb)
DOI: 10.6084/m9.figshare.c.3631274_d2.v1
title: Additional file 2: of Functional morphology of giant mole crab larvae: a possible case of defensive enrollment

description: Persistent identifiers for specimens in database MorphDBase. (XLS 7.50 kb)
DOI: 10.6084/m9.figshare.c.3631511_d2.v1
title: Additional file 2: of Hybrid origin of European Vipers (Vipera magnifica and Vipera orlovi) from the Caucasus determined using genomic scale DNA markers

description: List of samples used with information about species, locality, date of collection, collector, and institution where collections are stored. (XLS 34 kb)
DOI: 10.6084/m9.figshare.c.3631505_d5.v1
title: Additional file 6: Table S3. of Human milk microbiota profiles in relation to birthing method, gestation and infant gender

description: Comparison of relative abundances of different genera detected in milk between preterm and term samples, caesarean and vaginal deliveries, and male and female child. The values reported for “rab.sample.” represents the base 2 logarithm of the relative abundance of a specific genus within a sample. “rab.win..” represents the base 2 logarithm of the median abundance of a specific genus in all samples within a group (i.e. preterm samples or term samples) relative to the geometric mean abundance, which has a value of 0. Thus, positive values are higher than the geometric mean and are thus more abundant than negative values, which are lower than the geometric mean. Significance (p
DOI: 10.6084/m9.figshare.c.3631505_d6.v1
title: Additional file 1: Table S1. of Human milk microbiota profiles in relation to birthing method, gestation and infant gender

description: Summary of clinical data collected from 39 Canadian women. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3631505_d7.v1
title: Additional file 3: Table S2. of Human milk microbiota profiles in relation to birthing method, gestation and infant gender

description: Genera present in every milk sample. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.c.3631802_d1.v1
title: Additional file 2: Table S2.A-F. of Transcriptomic and proteomic approach to identify differentially expressed genes and proteins in Arabidopsis thaliana mutants lacking chloroplastic 1 and cytosolic FBPases reveals several levels of metabolic regulation

description: Gene Clustering analyses. Six transcriptional patterns identified by k-means clustering analysis in cfbp1 and cyfbp mutants. (ZIP 136 kb)
DOI: 10.6084/m9.figshare.c.3631805_d1.v1
title: Additional file 1: of Rational design of cancer gene panels with OncoPaD

description: Description of tumor cohorts. Excel file with description of the mutational datasets currently used by the OncoPaD web service (Table S1)ďťż. (XLSX 6 kb)
DOI: 10.6084/m9.figshare.c.3631808_d1.v1
title: MOESM4 of Primer development to obtain complete coding sequence of HA and NA genes of influenza A/H3N2 virus

description: Additional file 4. The alignment of designed primer sets with HA sequences of H3N2 virus retrieved from GISAID.
DOI: 10.6084/m9.figshare.c.3631802_d2.v1
title: Additional file 4: Table S3. of Transcriptomic and proteomic approach to identify differentially expressed genes and proteins in Arabidopsis thaliana mutants lacking chloroplastic 1 and cytosolic FBPases reveals several levels of metabolic regulation

description: List of cfbp1 and cyfbp genes identified as differentially expressed in rosettes and roots by microarray analysis which are involved in the Calvin cycle, glycolysis, and starch metabolism. (CSV 9 kb)
DOI: 10.6084/m9.figshare.c.3631808_d3.v1
title: MOESM5 of Primer development to obtain complete coding sequence of HA and NA genes of influenza A/H3N2 virus

description: Additional file 5. The alignment of designed primer sets with NA sequences of H3N2 virus retrieved from GISAID.
DOI: 10.6084/m9.figshare.c.3631805_d2.v1
title: Additional file 4: of Rational design of cancer gene panels with OncoPaD

description: Comparison with commercial panels. Excel file containing the results of the comparison of gene panels designed employing OncoPaD with commercially available panels (Table S3)ďťż. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3631808_d4.v1
title: MOESM1 of Primer development to obtain complete coding sequence of HA and NA genes of influenza A/H3N2 virus

description: Additional file 1. The list of HA and NA sequences retrieved from GISAID database. This supplementary file was GISAD acknowledge table consisted of the list of HA and NA sequences including the submitting laboratories.
DOI: 10.6084/m9.figshare.c.3631802_d4.v1
title: Additional file 1: Table S1. of Transcriptomic and proteomic approach to identify differentially expressed genes and proteins in Arabidopsis thaliana mutants lacking chloroplastic 1 and cytosolic FBPases reveals several levels of metabolic regulation

description: List of cfbp1 and cyfbp genes identified as differentially expressed in rosettes and roots by microarray analysis. (XLSX 549 kb)
DOI: 10.6084/m9.figshare.c.3631805_d4.v1
title: Additional file 3: of Rational design of cancer gene panels with OncoPaD

description: Drivers information. Excel file containing the list of driver genes per tumor type currently used by the OncoPaD web service (Table S2). (XLSX 44Â kb)
DOI: 10.25934/pr00010922
title: Explainable Machine Learning Models for AMR Prediction in Africa

description: Antimicrobial resistance (AMR) is one of the greatest threats to global health, with Africa facing unique challenges due to limited healthcare infrastructure, unregulated antibiotic use, and a high burden of infectious diseases. Common pathogens are increasingly resistant to antibiotics, making treatment options less effective and leading to higher mortality rates. There is a critical need for data-driven solutions to combat AMR, tailored specifically to African contexts.
This project will develop explainable machine learning (ML) models to predict AMR patterns in African countries. These models will not only predict resistance trends but will also provide insights into the key drivers of resistance using explainability techniques, enabling targeted interventions.
The explainable ML models will predict the likelihood of antibiotic resistance in pathogens, helping healthcare providers choose the most effective treatments for their patients.
By identifying the key factors driving resistance, the models will support the design of more effective stewardship programs.
DOI: 10.6084/m9.figshare.c.3631988_d11.v1
title: Additional file 7 of Importance of rare gene copy number alterations for personalized tumor characterization and survival analysis

description: Table S6. Predicted TCGA cohort-specific survival signature genes. (XLS 58 kb)
DOI: 10.6084/m9.figshare.c.3632000_d7.v1
title: Additional file 5: Table S5. of Genome analysis of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB revealed high numbers in secreted proteins and cell wall degrading enzymes

description: Distribution of phenotypic categories of R. solani AG2-2IIIB gene orthologs using the PHI database. (XLS 290 kb)
DOI: 10.6084/m9.figshare.c.3632021_d4.v1
title: Additional file 3: of Transcriptional analysis of the conidiation pattern shift of the entomopathogenic fungus Metarhizium acridum in response to different nutrients

description: Genes up-regulated expression during normal conidiation. (XLS 64Â kb)
DOI: 10.6084/m9.figshare.c.3632021_d5.v1
title: Additional file 11: of Transcriptional analysis of the conidiation pattern shift of the entomopathogenic fungus Metarhizium acridum in response to different nutrients

description: Primers for MgC-GEP and genes verified by MgC-GEP. (XLS 79Â kb)
DOI: 10.6084/m9.figshare.c.3632021_d6.v1
title: Additional file 7: of Transcriptional analysis of the conidiation pattern shift of the entomopathogenic fungus Metarhizium acridum in response to different nutrients

description: The types and numbers of pathways involved in the regulation of the conidiation pattern shift with a single nutrient change. (XLS 29Â kb)
DOI: 10.6084/m9.figshare.c.3632027_d2.v1
title: Additional file 3: of Genome sequence of the filamentous soil fungus Chaetomium cochliodes reveals abundance of genes for heme enzymes from all peroxidase and catalase superfamilies

description: Table S2. Abbreviations of peroxidase gene names used for the peroxidase-catalase superfamily. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3632021_d7.v1
title: Additional file 9: of Transcriptional analysis of the conidiation pattern shift of the entomopathogenic fungus Metarhizium acridum in response to different nutrients

description: Phosphate-regulate microcycle conidiation genes. (XLS 71Â kb)
DOI: 10.6084/m9.figshare.c.3632033_d1.v1
title: MOESM2 of Rationale and design of a randomized trial to test the safety and non-inferiority of canagliflozin in patients with diabetes with chronic heart failure: the CANDLE trial

description: Additional file 2. Â Guidepost for appropriate glycemic control in Japan.
DOI: 10.6084/m9.figshare.c.3632027_d3.v1
title: Additional file 7: of Genome sequence of the filamentous soil fungus Chaetomium cochliodes reveals abundance of genes for heme enzymes from all peroxidase and catalase superfamilies

description: Table S5. Abbreviations of peroxidase gene names used for the peroxidase-peroxygenase superfamily. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3632021_d8.v1
title: Additional file 10: of Transcriptional analysis of the conidiation pattern shift of the entomopathogenic fungus Metarhizium acridum in response to different nutrients

description: Genes used for expression profiling via multigene concatemers. (XLS 123Â kb)
DOI: 10.6084/m9.figshare.c.3632030_d2.v1
title: Additional file 2: of Complex and extensive post-transcriptional regulation revealed by integrative proteomic and transcriptomic analysis of metabolite stress response in Clostridium acetobutylicum

description: Proteomic data. Clostridium acetobutylicum proteomic data for butanol and butyrate stress using iTRAQ labeling.
DOI: 10.6084/m9.figshare.c.3632027_d4.v1
title: Additional file 1: of Genome sequence of the filamentous soil fungus Chaetomium cochliodes reveals abundance of genes for heme enzymes from all peroxidase and catalase superfamilies

description: Table S1. Substitution models with the lowest Bayesian information criterion scores for all 5 superfamilies analysed in this contribution. (XLSX 70 kb)
DOI: 10.6084/m9.figshare.c.3632021_d9.v1
title: Additional file 6: of Transcriptional analysis of the conidiation pattern shift of the entomopathogenic fungus Metarhizium acridum in response to different nutrients

description: Sucrose-regulate microcycle conidiation genes. (XLS 48Â kb)
DOI: 10.6084/m9.figshare.c.3632285_d1.v1
title: Additional file 1: Table S1. of A proteomics approach reveals molecular manipulators of distinct cellular processes in the salivary glands of Glossina m. morsitans in response to Trypanosoma b. brucei infections

description: 523 non-redundant protein groups identified by LC-MS/MS. Table S2. 362 protein groups specific to the host vector. Table S3. 158 protein groups specific to the parasite identified in parasitized SG of G. m. morsitans. Table S4. Four bacterial endosymbiont proteins identified in the G. m. morsitans by LC-MS/MS. Table S5. 276 protein groups upregulated in the parasitized SGs of G. m. morsitans. Table S6. 32 protein groups significantly upregulated in the parasitized SG of G. m. morsitans. Table S7. 81 protein groups downregulated in parasitized SGs. Table S8. Four host proteins not affected by parasite infection. Table S9. Distribution of GO terms associated with biological processes. Table S10. GO terms associated with molecular functions. Table S11. GO terms associated with cellular compartments. Table S12. 225 protein pairs with significant interacting probabilities (â Ľ0.2) determined by FpClass. (XLSX 352 kb)
DOI: 10.6084/m9.figshare.c.3632294_d1.v1
title: Additional file 1: of PineElm_SSRdb: a microsatellite marker database identified from genomic, chloroplast, mitochondrial and EST sequences of pineapple (Ananas comosus (L.) Merrill)

description: Genomic SSR markers of Ananas comosus (L.) Merrill. (TXT 5249 kb)
DOI: 10.6084/m9.figshare.c.3632447_d7.v1
title: Additional file 2: Table S2. of Gene expression analysis in Fmr1KO mice identifies an immunological signature in brain tissue and mGluR5-related signaling in primary neuronal cultures

description: Centroid calculation for each cluster in Fig. 1. The distance between clusters is represented as a difference of absolute values on the PC1 and PC2 axes. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3632477_d1.v1
title: Additional file 4: Table S5. of Identification of therapeutic targets applicable to clinical strategies in ovarian cancer

description: Candidate shRNAs identified in Ovcar3. (XLS 55Â kb)
DOI: 10.6084/m9.figshare.c.3632447_d8.v1
title: Additional file 5: Table S5. of Gene expression analysis in Fmr1KO mice identifies an immunological signature in brain tissue and mGluR5-related signaling in primary neuronal cultures

description: Selected over-represented KEGG pathways with core differentially expressed genes in Fmr1KO that made a pathway significant. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3632447_d9.v1
title: Additional file 13: Table S13. of Gene expression analysis in Fmr1KO mice identifies an immunological signature in brain tissue and mGluR5-related signaling in primary neuronal cultures

description: Significance of overlap for murine differentially expressed genes (up + down) and genes represented in a specific cluster in human development. Fisherâ  s exact test was used to calculate the statistics. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3632447_d10.v1
title: Additional file 3: Table S3. of Gene expression analysis in Fmr1KO mice identifies an immunological signature in brain tissue and mGluR5-related signaling in primary neuronal cultures

description: List of significant differential gene expressed in four systems. (XLSX 1 mb)
DOI: 10.6084/m9.figshare.c.3632486_d1.v1
title: Additional file 2: Table S1. of Major differential gene regulation in Coxiella burnetii between in vivo and in vitro cultivation models

description: List of genes differentially regulated in vivo and cell-free culture with respect to cell culture in vitro model of 602 strain, after passing statistical significance filter and showing more than two fold change in expression. All the genes are arranged based on COG functions. A positive value indicates that the gene is up-regulated, a negative value indicates that the gene is down-regulated and â   indicates no difference compared to cell culture in gene regulation under the respective condition. (XLSX 204Â kb)
DOI: 10.6084/m9.figshare.c.3632477_d5.v1
title: Additional file 3: Table S4. of Identification of therapeutic targets applicable to clinical strategies in ovarian cancer

description: Candidate shRNAs identified in Igrov1. (XLS 262Â kb)
DOI: 10.6084/m9.figshare.c.3632447_d11.v1
title: Additional file 10: Table S10. of Gene expression analysis in Fmr1KO mice identifies an immunological signature in brain tissue and mGluR5-related signaling in primary neuronal cultures

description: Significance of overlap for hippocampal or cortical cultures and embryonic brain tissues of KO/WT up/down/combine differentially expressed genes AND human SFARI genes. Fisherâ  s exact test was used to calculate the statistics. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3632447_d12.v1
title: Additional file 14: Table S14. of Gene expression analysis in Fmr1KO mice identifies an immunological signature in brain tissue and mGluR5-related signaling in primary neuronal cultures

description: Enriched pathways in murine differentially expressed up-regulated genes in cortical and hippocampal cultures highlighted on human development (C0 and H0 clusters respectively). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3632690_d3.v1
title: Additional file 3: Table S4. of Comparative genomic analysis of toxin-negative strains of Clostridium difficile from humans and animals with symptoms of gastrointestinal disease

description: SNPs identified by Mauve alignments of genomes of C. difficile strains 19.3 and 22.1. Table S5. Bidirectional BLASTp analysis of peptide sequences predicted from genomes of C. difficile strains 19.3 and 22.1 to identify amino acid changes caused by SNPs in the genomes. Table S8. Assembly Statistics downloaded from short read archives. Table S9. Unique proteins identified from the All Vs All BLASTp analysis of C. difficile genomes. (XLSX 632Â kb)
DOI: 10.6084/m9.figshare.c.3632690_d5.v1
title: Additional file 4: Table S11. of Comparative genomic analysis of toxin-negative strains of Clostridium difficile from humans and animals with symptoms of gastrointestinal disease

description: Regions identified in each C. difficile genome by PHAST. Sheet 1. C. difficile strain P29 genome, Sheet 2. C. difficile strain H3 genome, Sheet 3. C. difficile strain 5.3 genome, Sheet 4. C. difficile strain 19.3 genome. Sheet 5. C. difficile strain 22.1 genome. (XLSX 134Â kb)
DOI: 10.6084/m9.figshare.c.3632744_d1.v1
title: Additional file 3: of Seqinspector: position-based navigation through the ChIP-seq data landscape to identify gene expression regulators

description: Lists of astroglia and neuron specific genes. (XLS 63 kb)
DOI: 10.15468/dl.h5t48s
title: Occurrence Download

description: A dataset containing 1773836 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kenya",
 "Geometry POLYGON((33.58307 -1.77591,35.48464 -2.37015,36.17792 -2.64746,37.48526 -1.67687,36.07888 -0.17146,33.46422 0.30394,33.58307 -1.77591))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 1812-2024"
 ]
}

 The dataset includes 1773836 records from 385 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038041-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.