cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25274161
title: Genome sequences of haemagglutinin cleavage site predict the pathogenicity phenotype of avian influenza virus: statistically validated data for facilitating rapid declarations and reducing reliance on <i>in vivo</i> testing

description: Based on the pathogenicity in chickens, most H1–H16 avian influenza viruses (AIV) cause mild diseases, whereas some of the H5 and H7 AI viruses cause severe, systemic disease. The number of basic amino acids in the haemagglutinin (HA) cleavage site of AIV plays a critical role in pathogenicity. As we gain a greater understanding of the molecular mechanisms of pathogenicity, genome sequencing of the HA0 cleavage site has assumed a greater role in assessment of the potential pathogenicity of H5 and H7 viruses. We validated the use of HA cleavage site motif analysis by comparing molecular pathotyping data against experimental <i>in vivo</i> (intravenous pathogenicity index [IVPI] and lethality) data for determination of both low pathogenicity and high pathogenicity AI virus declaration with the goal of expediting pathotype confirmation and further reducing the reliance on <i>in vivo</i> testing. Our data provide statistical support to the continued use of molecular determination of pathotype for AI viruses based on the HA cleavage site sequence in the absence of an <i>in vivo</i> study determination. This approach not only expedites the declaration process of highly pathogenic AIV (HPAIV) but also reduces the need for experimental <i>in vivo</i> testing of H5 and H7 viruses.
DOI: 10.6084/m9.figshare.25274161.v1
title: Genome sequences of haemagglutinin cleavage site predict the pathogenicity phenotype of avian influenza virus: statistically validated data for facilitating rapid declarations and reducing reliance on <i>in vivo</i> testing

description: Based on the pathogenicity in chickens, most H1–H16 avian influenza viruses (AIV) cause mild diseases, whereas some of the H5 and H7 AI viruses cause severe, systemic disease. The number of basic amino acids in the haemagglutinin (HA) cleavage site of AIV plays a critical role in pathogenicity. As we gain a greater understanding of the molecular mechanisms of pathogenicity, genome sequencing of the HA0 cleavage site has assumed a greater role in assessment of the potential pathogenicity of H5 and H7 viruses. We validated the use of HA cleavage site motif analysis by comparing molecular pathotyping data against experimental <i>in vivo</i> (intravenous pathogenicity index [IVPI] and lethality) data for determination of both low pathogenicity and high pathogenicity AI virus declaration with the goal of expediting pathotype confirmation and further reducing the reliance on <i>in vivo</i> testing. Our data provide statistical support to the continued use of molecular determination of pathotype for AI viruses based on the HA cleavage site sequence in the absence of an <i>in vivo</i> study determination. This approach not only expedites the declaration process of highly pathogenic AIV (HPAIV) but also reduces the need for experimental <i>in vivo</i> testing of H5 and H7 viruses.
DOI: 10.6084/m9.figshare.25287997
title: Evaluating the dynamics and efficacy of a live, attenuated <i>Mycoplasma anserisalpingitidis</i> vaccine candidate under farm conditions

description: The aim of the present study was to monitor the dynamics and to measure the safety and efficacy of a live, attenuated, thermosensitive <i>Mycoplasma anserisalpingitidis</i> vaccine candidate, namely MA271, in geese breeder flocks under field conditions. Two rearing flocks were vaccinated with MA271 at 4 weeks of age and boosted at 24 weeks of age by cloaca inoculation (1 ml) and eye-dropping (60 µl). The geese then were transported to multi-aged breeding farms. Two breeding flocks served as controls. Colonization of the cloaca by MA271 showed 75% maximum prevalence between 4 and 6 weeks after the first vaccination. Then the prevalence decreased to 25% until the cooler, humid fall months which coincided with the booster vaccination. Boosting raised cloacal colonization to 100%. No clinical signs were observed in the vaccinated birds. After transportation to five multi-aged breeding farms, the wild-type strain appeared as well as MA271 in three flocks. In one flock, the wild-type strain completely displaced MA271, while in one flock only MA271 was detected. Only wild-type strains were detected in the control flocks; however, due to an HPAI outbreak, both flocks were exterminated before the end of the study. Based on the available data, the median percentage of infertile eggs was 3.7-5.1% in the MA271 vaccinated flocks, and 7.7% in the non-vaccinated flock. In conclusion, MA271 can colonize the cloaca of geese under field conditions. MA271 proved to be safe and presumably protects against <i>M. anserisalpingitidis-</i>induced reproduction losses.
DOI: 10.6084/m9.figshare.25287997.v1
title: Evaluating the dynamics and efficacy of a live, attenuated <i>Mycoplasma anserisalpingitidis</i> vaccine candidate under farm conditions

description: The aim of the present study was to monitor the dynamics and to measure the safety and efficacy of a live, attenuated, thermosensitive <i>Mycoplasma anserisalpingitidis</i> vaccine candidate, namely MA271, in geese breeder flocks under field conditions. Two rearing flocks were vaccinated with MA271 at 4 weeks of age and boosted at 24 weeks of age by cloaca inoculation (1 ml) and eye-dropping (60 µl). The geese then were transported to multi-aged breeding farms. Two breeding flocks served as controls. Colonization of the cloaca by MA271 showed 75% maximum prevalence between 4 and 6 weeks after the first vaccination. Then the prevalence decreased to 25% until the cooler, humid fall months which coincided with the booster vaccination. Boosting raised cloacal colonization to 100%. No clinical signs were observed in the vaccinated birds. After transportation to five multi-aged breeding farms, the wild-type strain appeared as well as MA271 in three flocks. In one flock, the wild-type strain completely displaced MA271, while in one flock only MA271 was detected. Only wild-type strains were detected in the control flocks; however, due to an HPAI outbreak, both flocks were exterminated before the end of the study. Based on the available data, the median percentage of infertile eggs was 3.7-5.1% in the MA271 vaccinated flocks, and 7.7% in the non-vaccinated flock. In conclusion, MA271 can colonize the cloaca of geese under field conditions. MA271 proved to be safe and presumably protects against <i>M. anserisalpingitidis-</i>induced reproduction losses.
DOI: 10.60712/si-id69536.1
title: StrainInfo SI-ID 69536.1

description: StrainInfo dataset 69536 about a strain of Brucella anthropi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69617.1
title: StrainInfo SI-ID 69617.1

description: StrainInfo dataset 69617 about a strain of Pasteurella multocida subsp. multocida. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69618.1
title: StrainInfo SI-ID 69618.1

description: StrainInfo dataset 69618 about a strain of Pasteurella multocida subsp. multocida. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69619.1
title: StrainInfo SI-ID 69619.1

description: StrainInfo dataset 69619 about a strain of Pasteurella multocida. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69468.1
title: StrainInfo SI-ID 69468.1

description: StrainInfo dataset 69468 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69620.1
title: StrainInfo SI-ID 69620.1

description: StrainInfo dataset 69620 about a strain of Pasteurella multocida subsp. multocida. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69469.1
title: StrainInfo SI-ID 69469.1

description: StrainInfo dataset 69469 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69470.1
title: StrainInfo SI-ID 69470.1

description: StrainInfo dataset 69470 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69471.1
title: StrainInfo SI-ID 69471.1

description: StrainInfo dataset 69471 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69537.1
title: StrainInfo SI-ID 69537.1

description: StrainInfo dataset 69537 about a strain of Brucella anthropi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69538.1
title: StrainInfo SI-ID 69538.1

description: StrainInfo dataset 69538 about a strain of Brucella anthropi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69539.1
title: StrainInfo SI-ID 69539.1

description: StrainInfo dataset 69539 about a strain of Brucella anthropi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69540.1
title: StrainInfo SI-ID 69540.1

description: StrainInfo dataset 69540 about a strain of Brucella anthropi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69621.1
title: StrainInfo SI-ID 69621.1

description: StrainInfo dataset 69621 about a strain of Pasteurella multocida subsp. multocida. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69622.1
title: StrainInfo SI-ID 69622.1

description: StrainInfo dataset 69622 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69472.1
title: StrainInfo SI-ID 69472.1

description: StrainInfo dataset 69472 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69623.1
title: StrainInfo SI-ID 69623.1

description: StrainInfo dataset 69623 about a strain of Rodentibacter pneumotropicus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69473.1
title: StrainInfo SI-ID 69473.1

description: StrainInfo dataset 69473 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69474.1
title: StrainInfo SI-ID 69474.1

description: StrainInfo dataset 69474 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69475.1
title: StrainInfo SI-ID 69475.1

description: StrainInfo dataset 69475 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69541.1
title: StrainInfo SI-ID 69541.1

description: StrainInfo dataset 69541 about a strain of Brucella intermedia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69542.1
title: StrainInfo SI-ID 69542.1

description: StrainInfo dataset 69542 about a strain of Brucella intermedia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69543.1
title: StrainInfo SI-ID 69543.1

description: StrainInfo dataset 69543 about a strain of Octadecabacter arcticus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69544.1
title: StrainInfo SI-ID 69544.1

description: StrainInfo dataset 69544 about a strain of Oligella urethralis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69624.1
title: StrainInfo SI-ID 69624.1

description: StrainInfo dataset 69624 about a strain of Rodentibacter pneumotropicus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69625.1
title: StrainInfo SI-ID 69625.1

description: StrainInfo dataset 69625 about a strain of Rodentibacter pneumotropicus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69626.1
title: StrainInfo SI-ID 69626.1

description: StrainInfo dataset 69626 about a strain of Rodentibacter pneumotropicus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69627.1
title: StrainInfo SI-ID 69627.1

description: StrainInfo dataset 69627 about a strain of Pasteurella. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69476.1
title: StrainInfo SI-ID 69476.1

description: StrainInfo dataset 69476 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69477.1
title: StrainInfo SI-ID 69477.1

description: StrainInfo dataset 69477 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69478.1
title: StrainInfo SI-ID 69478.1

description: StrainInfo dataset 69478 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69479.1
title: StrainInfo SI-ID 69479.1

description: StrainInfo dataset 69479 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69545.1
title: StrainInfo SI-ID 69545.1

description: StrainInfo dataset 69545 about a strain of Oligella urethralis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69546.1
title: StrainInfo SI-ID 69546.1

description: StrainInfo dataset 69546 about a strain of Oligella urethralis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69547.1
title: StrainInfo SI-ID 69547.1

description: StrainInfo dataset 69547 about a strain of Oligella urethralis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69628.1
title: StrainInfo SI-ID 69628.1

description: StrainInfo dataset 69628 about a strain of Pasteurella. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69629.1
title: StrainInfo SI-ID 69629.1

description: StrainInfo dataset 69629 about a strain of Pasteurella. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69630.1
title: StrainInfo SI-ID 69630.1

description: StrainInfo dataset 69630 about a strain of Ornithobacterium rhinotracheale. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69631.1
title: StrainInfo SI-ID 69631.1

description: StrainInfo dataset 69631 about a strain of Pasteurella. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69480.1
title: StrainInfo SI-ID 69480.1

description: StrainInfo dataset 69480 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69481.1
title: StrainInfo SI-ID 69481.1

description: StrainInfo dataset 69481 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69482.1
title: StrainInfo SI-ID 69482.1

description: StrainInfo dataset 69482 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69548.1
title: StrainInfo SI-ID 69548.1

description: StrainInfo dataset 69548 about a strain of Oligella urethralis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69549.1
title: StrainInfo SI-ID 69549.1

description: StrainInfo dataset 69549 about a strain of Oligella urethralis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.ryfmdv
title: Occurrence Download

description: A dataset containing 3146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((488.08056 3.60989,485.87576 0.58956,486.62255 -1.97046,485.62683 -3.00075,485.27122 -5.12894,488.18725 -6.54398,491.24552 -6.50865,491.77894 -3.28481,489.78751 -0.54838,489.75195 3.39693,488.08056 3.60989))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Acropora Oken, 1815"
 ]
}

 The dataset includes 3146 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001688-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id69550.1
title: StrainInfo SI-ID 69550.1

description: StrainInfo dataset 69550 about a strain of Oligella urethralis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69551.1
title: StrainInfo SI-ID 69551.1

description: StrainInfo dataset 69551 about a strain of Oligella urethralis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.