cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6269009.v1
title: Supplementary Material for: Kidney Disease in Women is Associated with Disadvantaged Childhood Socioeconomic Position

description: <b><i>Background:</i></b> Socioeconomic position (SEP) is an important determinant of health and it is dynamic across the entire lifespan. We sought to investigate the relationship between life-course SEP and chronic kidney disease (CKD) using 3 conceptual models: critical period, pathway and accumulation. <b><i>Methods:</i></b> Cross-sectional analysis of 4,996 participants from The Irish Longitudinal Study on Ageing, a nationally representative cohort of community-dwelling adults aged ≥50 years. We defined childhood and adulthood SEP according to father’s and respondent’s occupation respectively. SEP was categorised as high (reference), intermediate, low and never worked. CKD was defined as a glomerular filtration rate &lt; 60 mL/min/1.73 m<sup>2</sup> estimated from the combination of creatinine and cystatin C. We used logistic regression to estimate the age-adjusted association between SEP and CKD separately in men and women. <b><i>Results:</i></b> Low childhood SEP was strongly associated with CKD in women, after adjusting for adulthood SEP (OR 1.90 [95% CI 1.24–2.92]), supporting the critical period hypothesis. This association was not explained by traditional CKD risk factors. Women who experienced low childhood SEP and whose circumstances improved in adulthood also had increased odds of CKD, further supporting a critical period effect in childhood. There was comparatively less evidence in support of the pathway or accumulation models. We did not observe a statistically significant association between SEP and CKD in men. <b><i>Conclusions:</i></b> Our findings suggest that women exposed to disadvantaged SEP in childhood represent an at-risk group in whom there may be opportunities for identification of CKD and facilitation of health-promoting behaviours from an early age.
DOI: 10.5281/zenodo.4007929
title: Table S1: Data extraction table. A summary of the 166 candidate biomarkers that met the inclusion/exclusion criteria.

description: Supplementary material to Translating Biomarkers of Cholangiocarcinoma for Theranosis: A Systematic Review.
DOI: 10.6084/m9.figshare.6268802
title: MOESM4 of Gene regulation associated with sexual development and female fertility in different isolates of Trichoderma reesei

description: Additional file 4. Genes with highest transcript levels under sexual development conditions.
DOI: 10.6084/m9.figshare.6268802.v1
title: MOESM4 of Gene regulation associated with sexual development and female fertility in different isolates of Trichoderma reesei

description: Additional file 4. Genes with highest transcript levels under sexual development conditions.
DOI: 10.6084/m9.figshare.6268790
title: Additional file 2: of Small RNA profiling of low biomass samples: identification and removal of contaminants

description: Table S1. List of the generated datasets with public accession numbers. Table S2. Analysed published datasets with references and public accession numbers. Table S3. Potential exogenous sRNA sequences detected in human plasma after removal of contaminants. Table S4. List of the prokaryotic species whose reference genomes were used in the initial analysis. Table S5. List of the eukaryotic species whose reference genomes and/or cDNA collections were used in the initial analysis. Table S6. List of the viruses whose reference genomes were used in the initial analysis. Table S7. Data points for Fig. 2a. Table S8. Data points for Fig. 2b. Table S9. Data points for Fig. 2c. Table S10. Data points for Fig. 2d. Table S11. Data points for Fig. 4a. Table S12. Data points for Fig. 5b. (XLSX 228Â kb)
DOI: 10.6084/m9.figshare.6268790.v1
title: Additional file 2: of Small RNA profiling of low biomass samples: identification and removal of contaminants

description: Table S1. List of the generated datasets with public accession numbers. Table S2. Analysed published datasets with references and public accession numbers. Table S3. Potential exogenous sRNA sequences detected in human plasma after removal of contaminants. Table S4. List of the prokaryotic species whose reference genomes were used in the initial analysis. Table S5. List of the eukaryotic species whose reference genomes and/or cDNA collections were used in the initial analysis. Table S6. List of the viruses whose reference genomes were used in the initial analysis. Table S7. Data points for Fig. 2a. Table S8. Data points for Fig. 2b. Table S9. Data points for Fig. 2c. Table S10. Data points for Fig. 2d. Table S11. Data points for Fig. 4a. Table S12. Data points for Fig. 5b. (XLSX 228Â kb)
DOI: 10.6084/m9.figshare.6268781
title: MOESM3 of Gene regulation associated with sexual development and female fertility in different isolates of Trichoderma reesei

description: Additional file 3. Comparative analysis of gene regulation between growth on cellulose and under conditons of sexual development.
DOI: 10.6084/m9.figshare.6268781.v1
title: MOESM3 of Gene regulation associated with sexual development and female fertility in different isolates of Trichoderma reesei

description: Additional file 3. Comparative analysis of gene regulation between growth on cellulose and under conditons of sexual development.
DOI: 10.6084/m9.figshare.6268775
title: Additional file 2: of Inhibition of 2-AG hydrolysis differentially regulates blood brain barrier permeability after injury

description: Table S2. Gene ontology analysis. Gene ontology analysis was performed using the DAVID bioinformatics tools. The enriched functional annotation clusters are listed along with p values for LPS vs Sham upregulated genes, LPS vs Sham downregulated genes, and CPD-4645 vs vehicle downregulated genes. (XLSX 157 kb)
DOI: 10.6084/m9.figshare.6268775.v1
title: Additional file 2: of Inhibition of 2-AG hydrolysis differentially regulates blood brain barrier permeability after injury

description: Table S2. Gene ontology analysis. Gene ontology analysis was performed using the DAVID bioinformatics tools. The enriched functional annotation clusters are listed along with p values for LPS vs Sham upregulated genes, LPS vs Sham downregulated genes, and CPD-4645 vs vehicle downregulated genes. (XLSX 157 kb)
DOI: 10.6084/m9.figshare.6268772
title: Additional file 1: of Transcriptome analysis of alcohol-treated microglia reveals downregulation of beta amyloid phagocytosis

description: Table S1. Differentially expressed mRNAs due to alcohol treatment “Alc-DEs”. Shading indicates mRNA levels were confirmed by qPCR. Table S2 Differentially expressed mRNAs due to TII treatment “TII-DEs”. Table S3 Differentially expressed mRNAs due to alcohol and TII treatment “AlcTII-DEs”. Table S4 Treatment-group overlap of differentially expressed mRNAs. Grey, involved in immune effector responses; Blue, mitochondrial ribosomal subunit; Orange, nuclear ribosomal subunit. Table S5 KEGG pathways identified in treatment groups. Table S6 FPKM (fragments per kilobase of transcript per million fragments mapped). (ZIP 3000 kb)
DOI: 10.6084/m9.figshare.6268772.v1
title: Additional file 1: of Transcriptome analysis of alcohol-treated microglia reveals downregulation of beta amyloid phagocytosis

description: Table S1. Differentially expressed mRNAs due to alcohol treatment “Alc-DEs”. Shading indicates mRNA levels were confirmed by qPCR. Table S2 Differentially expressed mRNAs due to TII treatment “TII-DEs”. Table S3 Differentially expressed mRNAs due to alcohol and TII treatment “AlcTII-DEs”. Table S4 Treatment-group overlap of differentially expressed mRNAs. Grey, involved in immune effector responses; Blue, mitochondrial ribosomal subunit; Orange, nuclear ribosomal subunit. Table S5 KEGG pathways identified in treatment groups. Table S6 FPKM (fragments per kilobase of transcript per million fragments mapped). (ZIP 3000 kb)
DOI: 10.6084/m9.figshare.6268766
title: MOESM2 of Gene regulation associated with sexual development and female fertility in different isolates of Trichoderma reesei

description: Additional file 2. Genes differentially regulated between mating types.
DOI: 10.6084/m9.figshare.6268766.v1
title: MOESM2 of Gene regulation associated with sexual development and female fertility in different isolates of Trichoderma reesei

description: Additional file 2. Genes differentially regulated between mating types.
DOI: 10.6084/m9.figshare.6268754
title: Additional file 1: of Inhibition of 2-AG hydrolysis differentially regulates blood brain barrier permeability after injury

description: Table S1. Differentially regulated genes. Differentially regulated genes (increased or decreased by at least twofold) and p values for LPS-vehicle vs sham-vehicle and LPS-CPD-4645 vs LPS-vehicle groups. (XLSX 294 kb)
DOI: 10.6084/m9.figshare.6268754.v1
title: Additional file 1: of Inhibition of 2-AG hydrolysis differentially regulates blood brain barrier permeability after injury

description: Table S1. Differentially regulated genes. Differentially regulated genes (increased or decreased by at least twofold) and p values for LPS-vehicle vs sham-vehicle and LPS-CPD-4645 vs LPS-vehicle groups. (XLSX 294 kb)
DOI: 10.6084/m9.figshare.6268742
title: MOESM1 of Gene regulation associated with sexual development and female fertility in different isolates of Trichoderma reesei

description: Additional file 1. Comparative analysis between genes regulated in female fertile and female sterile strains.
DOI: 10.6084/m9.figshare.6268742.v1
title: MOESM1 of Gene regulation associated with sexual development and female fertility in different isolates of Trichoderma reesei

description: Additional file 1. Comparative analysis between genes regulated in female fertile and female sterile strains.
DOI: 10.6084/m9.figshare.6268325
title: Dataset for: Sex differences but no evidence of quantitative honesty in the warning signals of six-spot burnet moths (Zygaena filipendulae L.)

description: The distinctive black and red wing pattern of six-spot burnet moths (Zygaena filipendulae, L.) is a classic example of aposematism, advertising their potent cyanide-based defences. While such warning signals provide a qualitatively honest signal of unprofitability, the evidence for quantitative honesty, whereby variation in visual traits could provide accurate estimates of individual toxicity, is more equivocal. Combining sophisticated measures of cyanogenic glucoside content and wing colour from the perspective of avian predators, we investigate the relationship between coloration and defences in Z. filipendulae, to test signal honesty both within and across populations. Mean cyanogenic glucoside concentration was not correlated with wing coloration across populations in males, yet in females higher cyanogenic glucoside levels were associated with smaller and lighter red forewing markings. Trends within populations were similarly indicative of quantitative dishonesty, and consistent differences between the sexes were apparent: larger females, carrying a greater total cyanogenic glucoside load, displayed larger but less conspicuous markings than smaller males, according to several colour metrics. The overall high aversiveness of cyanogenic glucosides and fluctuations in colour and toxin levels during an individual’s lifetime may contribute to these results, highlighting generally important reasons why signal honesty should not always be expected in aposematic species.
DOI: 10.6084/m9.figshare.6268325.v1
title: Dataset for: Sex differences but no evidence of quantitative honesty in the warning signals of six-spot burnet moths (Zygaena filipendulae L.)

description: The distinctive black and red wing pattern of six-spot burnet moths (Zygaena filipendulae, L.) is a classic example of aposematism, advertising their potent cyanide-based defences. While such warning signals provide a qualitatively honest signal of unprofitability, the evidence for quantitative honesty, whereby variation in visual traits could provide accurate estimates of individual toxicity, is more equivocal. Combining sophisticated measures of cyanogenic glucoside content and wing colour from the perspective of avian predators, we investigate the relationship between coloration and defences in Z. filipendulae, to test signal honesty both within and across populations. Mean cyanogenic glucoside concentration was not correlated with wing coloration across populations in males, yet in females higher cyanogenic glucoside levels were associated with smaller and lighter red forewing markings. Trends within populations were similarly indicative of quantitative dishonesty, and consistent differences between the sexes were apparent: larger females, carrying a greater total cyanogenic glucoside load, displayed larger but less conspicuous markings than smaller males, according to several colour metrics. The overall high aversiveness of cyanogenic glucosides and fluctuations in colour and toxin levels during an individual’s lifetime may contribute to these results, highlighting generally important reasons why signal honesty should not always be expected in aposematic species.
DOI: 10.6084/m9.figshare.6268172
title: Dataset for: Phenotypic disparity of the elbow joint in domestic dogs and wild carnivores

description: In this article, I use geometric morphometrics in 2D from a sample of 366 elbow joints to quantify phenotypic disparity in domestic dog breeds, in wild canids, and across the order Carnivora. The elbow joint is a well-established morphological indicator of forearm motion and, by extension, of functional adaptations towards locomotor or predatory behavior in living carnivores. The study of the elbow joint in domestic dogs allows the exploration of potential convergences between (i) pursuit predators and fast-running dogs, and (ii) ambush predators and fighting breeds. The results indicate that elbow shape disparity among domestic dogs exceeds that in wolves; it is comparable to the disparity of wild Caninae, but is significantly lower than the one observed throughout Canidae and Carnivora. Moreover, fast-running and fighting breeds are not convergent in elbow joint shape with extreme pursuit and ambush wild carnivores, respectively. The role of artificial selection and developmental constraints in shaping limb phenotypic disparity through the extremely fast evolution of the domestic dog is discussed in the light of this new evidence.
DOI: 10.6084/m9.figshare.6268172.v1
title: Dataset for: Phenotypic disparity of the elbow joint in domestic dogs and wild carnivores

description: In this article, I use geometric morphometrics in 2D from a sample of 366 elbow joints to quantify phenotypic disparity in domestic dog breeds, in wild canids, and across the order Carnivora. The elbow joint is a well-established morphological indicator of forearm motion and, by extension, of functional adaptations towards locomotor or predatory behavior in living carnivores. The study of the elbow joint in domestic dogs allows the exploration of potential convergences between (i) pursuit predators and fast-running dogs, and (ii) ambush predators and fighting breeds. The results indicate that elbow shape disparity among domestic dogs exceeds that in wolves; it is comparable to the disparity of wild Caninae, but is significantly lower than the one observed throughout Canidae and Carnivora. Moreover, fast-running and fighting breeds are not convergent in elbow joint shape with extreme pursuit and ambush wild carnivores, respectively. The role of artificial selection and developmental constraints in shaping limb phenotypic disparity through the extremely fast evolution of the domestic dog is discussed in the light of this new evidence.
DOI: 10.6084/m9.figshare.6267527
title: Do we train how we play_data.xlsx

description: A comparative investigation into the skill constraint frequencies of elite Australian Rules football.<br>This study allows Australian football coaches to directly compare the skill demands of match-scenario training drills with game conditions. Analysing skill constraint frequencies may assist practitioners in identifying specific facets of training, which may require modification to better align training prescription with the skill patterns of a game. This information may enhance current training practices and assist in the development of innovative training drills to better prepare players for specific skill requirements of competition.
DOI: 10.6084/m9.figshare.6267527.v1
title: Do we train how we play_data.xlsx

description: A comparative investigation into the skill constraint frequencies of elite Australian Rules football.<br>This study allows Australian football coaches to directly compare the skill demands of match-scenario training drills with game conditions. Analysing skill constraint frequencies may assist practitioners in identifying specific facets of training, which may require modification to better align training prescription with the skill patterns of a game. This information may enhance current training practices and assist in the development of innovative training drills to better prepare players for specific skill requirements of competition.
DOI: 10.6084/m9.figshare.6267503
title: MyConnectome_BIDS_tutorial2A

description: MyConnectome Dicoms for the BIDS tutorial part 2A
DOI: 10.6084/m9.figshare.6267494
title: Radon-traced pore-water as a potential source of CO2 and CH4 to receding black and clear water environments in the Amazon Basin

description: Here we report coupled, high resolution measurements of pCO<sub>2</sub>, CH<sub>4</sub> and <sup>222</sup>Rn during receding waters in the three major water types of the Central Amazon Basin: black (Negro River); clear (Tapajos River); white (Madeira River). Considerable spatial heterogeneity was observed in pCO<sub>2</sub>, CH<sub>4</sub> and <sup>222</sup>Rn concentrations ranging from 460 to 8030 uatm, 7 to 281 nM, and 713 to 8516 dpm m<sup>-3</sup>, respectively. the significant correlations between pCO2 and CH4 to <sup>222</sup>Rn in the black and clear waters suggests that pore-water further enhanced CO<sub>2 </sub>supersaturation by 18 - 47 % and is a driver of CH<sub>4</sub> dynamics in these waters.<br>
DOI: 10.6084/m9.figshare.6267494.v2
title: Radon-traced pore-water as a potential source of CO2 and CH4 to receding black and clear water environments in the Amazon Basin

description: Here we report coupled, high resolution measurements of pCO<sub>2</sub>, CH<sub>4</sub> and <sup>222</sup>Rn during receding waters in the three major water types of the Central Amazon Basin: black (Negro River); clear (Tapajos River); white (Madeira River). Considerable spatial heterogeneity was observed in pCO<sub>2</sub>, CH<sub>4</sub> and <sup>222</sup>Rn concentrations ranging from 460 to 8030 uatm, 7 to 281 nM, and 713 to 8516 dpm m<sup>-3</sup>, respectively. the significant correlations between pCO2 and CH4 to <sup>222</sup>Rn in the black and clear waters suggests that pore-water further enhanced CO<sub>2 </sub>supersaturation by 18 - 47 % and is a driver of CH<sub>4</sub> dynamics in these waters.<br>
DOI: 10.6084/m9.figshare.6267494.v1
title: Radon-traced pore-water as a potential source of CO2 and CH4 to receding black and clear water environments in the Amazon Basin

description: Here we report coupled, high resolution measurements of pCO<sub>2</sub>, CH<sub>4</sub> and <sup>222</sup>Rn during receding waters in the three major water types of the Central Amazon Basin: black (Negro River); clear (Tapajos River); white (Madeira River). Considerable spatial heterogeneity was observed in pCO<sub>2</sub>, CH<sub>4</sub> and <sup>222</sup>Rn concentrations ranging from 460 to 8030 uatm, 7 to 281 nM, and 713 to 8516 dpm m<sup>-3</sup>, respectively. the significant correlations between pCO2 and CH4 to <sup>222</sup>Rn in the black and clear waters suggests that pore-water further enhanced CO<sub>2 </sub>supersaturation by 18 - 47 % and is a driver of CH<sub>4</sub> dynamics in these waters.<br>
DOI: 10.6084/m9.figshare.6267473
title: PsaA from metagenomic assemblies

description: Photosystem I (PsaA) amino acid sequences from metagenomic assemblies - surface water from the San Pedro Channel
DOI: 10.6084/m9.figshare.6267473.v1
title: PsaA from metagenomic assemblies

description: Photosystem I (PsaA) amino acid sequences from metagenomic assemblies - surface water from the San Pedro Channel
DOI: 10.6084/m9.figshare.6267464
title: RecA from metagenomic assemblies

description: Amino acid sequences of RecA from metagenomic contigs - surface seawater from the San Pedro Channel
DOI: 10.6084/m9.figshare.6267464.v1
title: RecA from metagenomic assemblies

description: Amino acid sequences of RecA from metagenomic contigs - surface seawater from the San Pedro Channel
DOI: 10.6084/m9.figshare.6267461
title: Prd from metagenomic assemblies

description: Amino acid sequences of Prd identified in contigs assembled from metagenomes - surface seawater from the San Pedro Channel, minimum sequence length 200 amino acids
DOI: 10.6084/m9.figshare.6267461.v1
title: Prd from metagenomic assemblies

description: Amino acid sequences of Prd identified in contigs assembled from metagenomes - surface seawater from the San Pedro Channel, minimum sequence length 200 amino acids
DOI: 10.6084/m9.figshare.6267443
title: aaa

description: aadedre
DOI: 10.6084/m9.figshare.6267440
title: Data: High Rebound Mattress Toppers Facilitate Core Body Temperature Drop and Enhance Deep Sleep in the Initial Phase of Nocturnal Sleep

description: <b>Fig 1A Data : Changes in core body temperature during sleep with HR and LR in young adult males (study I).</b><b></b><br><b>Fig 1B Data: EEG delta power changes across the night (study I)</b><b></b><br><b>Fig 2A Data: Changes in core body temperature during sleep with HR and LR in old adult males (study II). </b><b></b><br><b>Fig 2B Data: EEG delta power changes across the night (study II)</b><b></b><br><b>Fig 3 Data : Muscle activity needed to generate a rolling over motion on HR and LR mattress (Roll over evaluations)</b><b></b><br><b>S2A Fig Data: Changes in core body temperature during sleep in young (study I) and old (study II) subjects. </b><b></b><br><b>S2 B Fig Data: EEG delta power changes across the night in young (study I) and old (Study II) subjects</b><b></b><br><b>Table 1 Data: Comparisons of sleep and sleep-related parameters between HR and LR mattress topper use (study I)</b><b></b><br><b>Table 1 PVT Data</b><b></b><br><b>Table 2 stage 3 and 4 Data: Amounts of slow wave sleep and sympathetic nerve activity (LF/HF values) in each 2-hour period (study I)</b><b></b><br><b>Table 2 LF/HF Data</b><b></b><br><b>Table 3 Data: Comparisons of sleep and sleep-related parameters between HR and LR mattress topper use (study II)</b><b></b><br><b>PVT data for Table 3</b><b></b><br><b>S1 Table stage 3 and 4 Data: Amounts of slow wave sleep and sympathetic nerve activity (LF/HF values) in each 2-hour period slept with HR and LR in old subjects (study II): </b><b></b><br><b>S1 Table LH/HF data Data</b><b></b><br><b>S2 Table Data: Comparisons of sleep and sleep-related parameters between young (study I) and old (study II) subjects: </b><b></b><br><b>S2 Table PVT Table</b><b></b><br><b>S3 Table stage 3&4 Data: Amounts of slow wave sleep and sympathetic nerve activity (LF/HF values) in each 2-hour period slept in young (study I) and old (study II) subjects</b><b></b><br> <b>S3 Table LH/HF values Data</b><b><br></b>