cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/grnz4krxp2
title: HHV-6A miR-aU14 and miR-30c alteration

description: Raw data for the manuscript showing HHV-6A encoded miR-aU14 mediated miR-30c regulation.
Manuscript title: Selective inhibition of microRNA processing by a herpesvirus-encoded microRNA governs virus reactivation from latency
Summary: Many viruses encode their own suite of miRNAs, which typically lack sequence homology to the miRNAs of their hosts. The molecular mechanisms and targets of virus-encoded miRNAs are incompletely understood. Here, we identify miRNA-mediated inhibition of miRNA processing as a general cellular mechanism that Human Herpesvirus 6A (HHV-6A) exploits to evade intrinsic host defense and drive the latent-lytic switch. We show that the most abundant HHV-6A miRNA (miR-aU14) selectively inhibits miRNA processing of miR-30 family members through direct RNA:RNA interaction. The subsequent loss of mature miR-30 results in a profound disruption of mitochondrial architecture via the miR-30/p53/Drp1 axis. This impairs type I interferon responses and promotes productive infection. Ectopic expression of miR-aU14 was sufficient and necessary to trigger virus reactivation from latency. Finally, we demonstrate that miRNA-mediated inhibition of miRNA processing represents a general mechanism in the cellular regulatory network that can be exploited to selectively target individual members of miRNA gene families.
DOI: 10.6084/m9.figshare.13385162.v1
title: Mink SARS -CoV-2 strains are less menace

description: Those are supplements for “SARS-CoV-2 has mutated among minks, reducing the lethality and infectivity to humans.” <br>acknowledgement_table includes those for the Netherlands’, Denmark’s, and mink samples. <br>sPC for samples and bases for the RNA sequence data. The PC for samples include the list of samples. They are tab-separated ASCII text, zip-compressed.<br>Those used the European samples: the acknowledgments are in GitHub at https://github.com/TomokazuKonishi/Fast-calc-for-SARS-CoV-2. The R-code for PCA is also in there.<br>The axes used will be sent upon request. Please contact konishi@akita-pu.ac.jp. However, if your alignment differs from mine, this will be useless, so I presently do not recommend this anymore.<br>“RCodeForBinom.txt” includes the code to make Fig. 1C.<br>
DOI: 10.6084/m9.figshare.21508317.v1
title: MicroTOM_annotation

description: we established a comprehensive database and website with genomic, transcriptomic, and metadata on microTom, which should be of great value to those who wants to adopt microTom as a model plant for research. Here we present some functional annotation information about microTom.
DOI: 10.6084/m9.figshare.27233952.v1
title: Data_Sheet_for_Clay_Soil_Stabilization.pdf

description: This document, titled "Data Sheet for Clay Soil Stabilization," comprises detailed experimental data focused on the characterization and stabilization of clay soil. It includes a series of tables presenting crucial geotechnical parameters such as plastic limits, chemical compositions of cement, moisture content, specific gravity, and dry density measurements across various soil samples. Each table meticulously outlines results from laboratory tests designed to evaluate the effectiveness of different stabilizers, including percentages of construction waste and cement, in enhancing soil properties.The data are derived from comprehensive testing protocols like ASTM standards, ensuring the reliability of the findings. These tables are essential for researchers and engineers in geotechnical engineering, providing empirical evidence to support the use of eco-friendly materials in soil stabilization efforts. The document serves as a valuable resource for developing sustainable construction practices and optimizing the engineering properties of problematic soils like clay, particularly in infrastructure projects.
DOI: 10.6084/m9.figshare.9902159.v1
title: Supplementary Material for: High Diagnostic Accuracy of Transbronchial Cryobiopsy in Fibrotic Interstitial Lung Diseases Compared to Final Explant Diagnosis

description: <b><i>Background:</i></b> A diagnostic lung biopsy may be required in some cases of fibrotic interstitial lung diseases (ILD). Transbronchial cryobiopsy has been suggested as a possible alternative to surgical lung biopsy. However, previous estimates of its diagnostic yield were not validated compared to the definitive diagnosis in explanted lungs. <b><i>Objectives:</i></b> We aimed to assess the diagnostic accuracy of cryobiopsy in fibrotic ILD patients who subsequently had lung transplantation. <b><i>Methods:</i></b> All 197 patients who underwent lung transplantation at our Center due to fibrotic ILD from January 2010 to May 2018, were screened for the presence of a pre-transplant cryobiopsy. Fourteen patients who underwent cryobiopsy before transplantation were identified. Two expert lung pathologists blinded<i></i>to the explant diagnoses, independently examined these cryobiopsy specimens to decide if they match guideline criteria for usual interstitial pneumonia (UIP) pattern or an alternative diagnosis. The primary measure was the diagnostic accuracy of cryobiopsy to detect or refute a UIP pattern, as compared to the final explant diagnosis. <b><i>Results:</i></b> Median time between cryobiopsy and transplantation was 1.4 years. All 14 cryobiopsy samples contained adequate alveolar tissue. The explant diagnosis of 13/14 patients was UIP. The two pathologists correctly diagnosed or refuted UIP in the cryobiopsy specimen in 12/14 cases (85.7%) and 11/14 cases (78.6%), respectively. The level of diagnostic agreement between pathologists was good (kappa 0.59, <i>p</i> = 0.016). <b><i>Conclusions:</i></b> Compared to the final explant diagnosis, transbronchial cryobiopsy had high diagnostic accuracy and good inter-observer agreement for UIP pattern. These findings support a potential diagnostic role for cryobiopsy in experienced centers.
DOI: 10.6084/m9.figshare.29114657.v1
title: data_breq.xlsx

description: Data set used in the analysis of the psychometric properties of the Spanish version of the Behavioural Regulation in Exercise Questionnaire -3 in patients with chronic pain
DOI: 10.6084/m9.figshare.16540335.v1
title: Table S2 (expanded): list including all summary statistics (separated gene/isoform)

description: These R objects include the summary statistics for all eGenes and eIsoforms. The name of each element is a gene ID or transcript ID (Gencode V34lift19). For each variant, the following information is reported: chromosome, position, reference, alternative, RS ID, variant ID, allele frequency, effect size (beta) and its standard error, p-value, gene or transcript ID, Bonferroni-adjusted p-value (across all tests for the same gene/transcript) and type (0 = primary, 1-5 = conditional)
DOI: 10.6084/m9.figshare.26085487.v2
title: <b>County-level Cooking Emission inventory in China from 1990 to 2021</b>

description: This dataset provides county-level cooking emission inventory in China from 1990 to 2021 by counties, subsectors, and pollutants in the xlsx file.- The years include every year from 1990 to 2021.- The provinces cover all 2848 counties of mainland China based on 2020 administrative divisions.- The subsectors include commercial cooking, residential cooking, and canteen cooking.-The pollutants include organics in the full volatility range (VOCs, SVOCs, IVOCs, and xLVOCs), PM2.5, ultrafine particles (UFPs), and polycyclic aromatic hydrocarbons (PAHs, encompassing gaseous PAHs, particulate PAHs, and benzo[a]pyrene equivalents (BaPeq))- The emissions of UFPs are in particles/yr and emissions of other pollutants are in kt/year.
DOI: 10.6084/m9.figshare.9696176.v1
title: Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs

description: GWAS summary statistics for abundance levels of 14 plasma protein biomarkers with relevance in cancer. Abundance levels in plasma were measured in healthy individuals. <br><br>These proteins are included: <br>CCL19, CCL24, CD40 ligand, CXCL10, CXCL5, E-selectin, Ep-CAM, IL-12, IL17RB, IL6RA, Kallikrein-11, MIA, MIC-A and VEGF-D. <br><br><br>
DOI: 10.17632/2f2g739642
title: L1 and L2 reading comprehension

description: This data includes high school Chinese-English learners' L1 reading comprehension, L2 reading comprehension, L2 vocabulary, L2 syntactic knowledge, L2 reading strategy use, and L2 reading anxiety.
DOI: 10.17632/b8m282y92t
title: Comparing Creativity Levels Among Students in Schools of Different Sizes: Insights from the PISA 2022 Results

description: Sample from PISA 2022 dataset
DOI: 10.17632/h8b3427s8k
title: Synthetic data for shoaling monochromatic waves over various bottom profiles

description: This dataset serves as the foundation for the research titled "Determining Optimal Window Size and Correcting for Wave Nonlinearity in Depth Inversion Algorithms." It comprises synthetic simulations of monochromatic wave shoaling over various bottom profiles, all conducted using FUNWAVE-TVD. This data collection is crucial for investigating the parameters of depth inversion algorithms, with a specific emphasis on identifying the optimal interrogation window size and addressing the nonlinear behavior of waves.
DOI: 10.17632/t2yzmb4c7s
title: KERATOCONUS

description: KERATOCONUS ABERROMETRIC DATA
DOI: 10.6084/m9.figshare.14472585.v1
title: Supplementary Material for: Autologous Non-Cultured Epidermal Cellular Grafting in the Surgical Treatment of Stable Vitiligo: The Skin Hospital Protocol

description: Autologous non-cultured epidermal cellular grafting is the treatment of choice for patients with stable refractory vitiligo. Recently, studies have shown cost-effective alternatives for this procedure, superseding previous techniques that required large research facilities or expensive pre-packaged kits. We provide modifications to current techniques, including the use of individual Petri dishes to allow for processing larger skin grafts, hyfrecation instead of conventional manual dermabrasion of the recipient site to reduce scar formation as well as better margin delineation, and an intravenous giving set with a filter for improved filtration of the mixed cell population. These modifications facilitated sufficient skin repigmentation in a cost-effective outpatient setting.
DOI: 10.6084/m9.figshare.15073626.v3
title: NISDA assay supplementary data

description: - Uncropped gel images- User-friendiness evaluation summary
DOI: 10.6084/m9.figshare.1541176.v1
title: Study of the Relationship between Height, Shoe Size, and Gender

description: On September 14, 2015 the lab group set out at 3:00pm and obtained data for the experiment from students inside, and on the benches, surrounding the Lumbers Building at York University. The data for shoe size and height can be considered as inaccurate as it was obtained simply by asking the participants of the study. It involved no tools or actual measurements. Gender was obtained from observation of the participants. It took ten minutes for all the data to be obtained.
DOI: 10.6084/m9.figshare.16641028.v1
title: Correlation Analysis Code

description: code for correlation analysis between gait variables and clinical scores
DOI: 10.6084/m9.figshare.25139822.v1
title: The Full Pathway Revealed - How Emotional Dysregulation and Self-Control Mediate the Dispositional Mindfulness-Aggression Relations in Adolescents.xls

description: The dataset includes data from the following psychological measures:Five Facet Mindfulness Questionnaire (FFMQ): A tool for assessing an individual's level of mindfulness across five dimensions: observing, describing, acting with awareness, non-judging of inner experience, and non-reactivity to inner experience.Difficulties in Emotion Regulation Scale (DERS): Used to assess difficulties individuals may have in regulating their emotions, covering aspects such as non-acceptance of emotional responses, difficulties engaging in goal-directed behavior when distressed, impulse control difficulties, lack of emotional awareness, limited access to emotion regulation strategies, and lack of emotional clarity.Self-Control Scale (SCS) developed by Tangney et al. (2004): This scale measures an individual's ability to regulate behavior, emotions, and thoughts in the pursuit of long-term goals. It assesses the general capacity for self-discipline, self-regulation, and impulse control.Buss-Perry Aggression Questionnaire (BPAQ): A measure for assessing individual levels of aggression, covering dimensions such as physical aggression, verbal aggression, anger, and hostility.The dataset has been pre-processed to ensure high quality for analysis:Invalid questionnaires have been removed: ensuring that only complete and correctly filled questionnaires are included.Reverse scoring has been corrected: for items that require it, ensuring that all scores are correctly aligned and can be directly interpreted.Ready for analysis using mean scores: indicating that the data can be directly used for statistical analysis by calculating average scores for each scale or subscale.
DOI: 10.17632/8gj97c4kgv
title: Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements

description: This dataset included the files for both benchmark and the structured segment in the SARS-CoV-2 genome described in the article 'Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements'. The description of the methods followed is available in the article in detail. Each directory and sub-directory has individual descriptions. The article is available at https://doi.org/10.1093/nar/gkaa1053
DOI: 10.17632/k2j8mvj8j3
title: Critically appraised topics in clinical forensic medicine

description: Peer reviewed literature reviews on topics relevant to clinical forensic medicine
DOI: 10.6084/m9.figshare.13274684.v1
title: Figure 2

description: Polycarbonate test results
DOI: 10.6084/m9.figshare.17869190.v1
title: Seurat object for the spatial transcriptomic data of sample HCM1220B

description: Seurat object for the spatial transcriptomic data of sample HCM1220B
DOI: 10.6084/m9.figshare.22306387.v1
title: Essential Richbourg-Peppas Dataset

description: The essential Richbourg-Peppas dataset, covering PVA and multi-arm PEG hydrogels created and fully characterized during Nathan Richbourg's PhD
DOI: 10.6084/m9.figshare.22691497.v1
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.23935683.v2
title: <b>A lightweight </b><b>spatiotemporal graph dilated convolutional network</b>

description: <b>Codes and Data</b>
DOI: 10.6084/m9.figshare.28248101.v5
title: GloPPRUA-Global Harmonized Urban Definition

description: This data is the global urban boundary of 222 scenarios combined by different population data sets, population density and population size thresholds, and the GIS model builder for calculating these data. See the README file for details.Reference：Li, W., Zhang, Y., Li, M., & Long, Y. (2024). Rethinking the country-level percentage of population residing in urban area with a global harmonized urban definition. iScience, 27(6), 110125. https://doi.org/10.1016/j.isci.2024.110125.The UN (United Nations) collects global data on the country-level Percentage of Population Residing in Urban Area (PPRUA); however, variations in definitions of urban areas make these data incomparable across countries. This paper evaluates the numbers of national defined PPRUA within UN statistics, by comparing them with the numbers of PPRUA we estimated through global comparable definitions. Refer to the Degree of Urbanization framework from the UN, we propose 90 global harmonized methods to estimating PPRUA by combining different configurations of three global population datasets, six urban total population thresholds, and five urban population density thresholds. This approach demonstrated significant variations in country-level PPRUA estimations, with a wide 95% confidence interval (CI) range. When comparing the national defined PPRUA with the global harmonized estimations, we found that most lie between the upper 95% CI and the median of the estimations. This study highlights the need for globally harmonious PPRUA estimates, calling for a reassessment of datasets and thresholds in the future and investigating urbanization on a scale beyond the country level.<br>
DOI: 10.6084/m9.figshare.14283678.v1
title: Evaluation of the impact of replacing ordinary by water saving plumbing fixtures in water consumption

description: ABSTRACT Water conservation is a matter of great importance. It is directly linked to the quality of life of society and the economic growth of cities. In this context, water saving plumbing fixtures are an option for reduction of consumption in buildings. This study aims to assess whether the replacement of ordinary plumbing fixtures with water saving ones in a University campus has an influence on water consumption. Besides the replacement of the plumbing fixtures, the influence of other variables such as temperature and number of students is analysed. Water meters were installed in one of the campus buildings in order to measure the isolated consumption in toilets, taps, urinals and drinking fountains. The study was divided in two stages: metering before the intervention and after the replacement of ordinary equipment with water saving devices (lavatory taps and toilets) and adjust of drinking fountains flow. For statistical analysis, a multiple linear regression model was used with consumption as the dependent variable and plumbing fixture replacement, number of students and daily temperature as the explanatory variables. The results show that the replacement of taps was significant for the total daily water consumption in the building, with 19.77% of reduction. According to an individual analysis of the plumbing fixtures, the replacement proved to be significant for the reduction of water consumption.
DOI: 10.6084/m9.figshare.28749416.v1
title: TrackMate data from various particle migrations as the basis for MSD, Fig. 6

description: Folders ('UV' and 'Vis') contain all the tracked data for various gel/droplet migrations for different irradiation conditions, respectively, which are subjected to MSD evaluation.Python script ('calcMSDs.py') can generates a larget data set of the MSDs, used later for Fig. 6.This sript employs Fast Fourier Transform (FFT) method to calculate the MSDs.
DOI: 10.6084/m9.figshare.5245054.v1
title: Supplementary Material for: Fetal Tricuspid Regurgitation in the First Trimester as a Screening Marker for Congenital Heart Defects: Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> Assessment of tricuspid flow has been reported to improve the performance of screening for aneuploidies and congenital heart defects (CHD). However, the performance of tricuspid regurgitation (TR) as a screening marker for CHD in euploid fetuses is yet to be established. The main aim of this meta-analysis was to establish the predictive accuracy of TR for CHD. <b><i>Methods:</i></b> MEDLINE, Embase, and the Cochrane Library were searched electronically utilizing combinations of the relevant medical subject heading for “fetus,” “tricuspid regurgitation,” and “first trimester.” The outcomes explored were prevalence of TR in an euploid population, strength of association between TR and CHD, and predictive accuracy of TR for CHD in euploid fetuses. Summary estimates of sensitivity, specificity, positive and negative likelihood ratios, and diagnostic odds ratio for the overall predictive accuracy of TR for the detection of CHD were computed using the hierarchical summary receiver-operating characteristics model. <b><i>Results:</i></b> A total of 452 articles were identified; 60 were assessed with respect to their eligibility for inclusion and a total of 4 studies were included in the study. TR was associated with an increased risk of CHD (RR: 9.6, 95% CI 2.8-33.5; I<sup>2</sup>: 92.7%). The strength of association between TR and CHD persisted when considering fetuses at risk for CHD, such as those with increased nuchal translucency (RR: 7.2, 95% CI 5.2-9.8; I<sup>2</sup>: 0%), while TR did not show any association with CHD when detected in a population at low risk for cardiac defects (RR: 9.3, 95% CI 0.8-111.8; I<sup>2</sup>: 93%). The overall diagnostic performance of TR in detecting CHD was poor in detecting CHD (sROC: 0.684, SE: 0.61) with a sensitivity of 35.2% (95% CI 26.9-44.1) and a specificity of 98.6% (95% CI 98.5-98.7). Detection of TR at the 11-14 weeks' scan showed a positive likelihood ratio of 7.2 (95% CI 5.3-9.8) in detecting CHD when applied to a population at risk for CHD such as fetuses with an increased nuchal translucency. <b><i>Conclusion:</i></b> The detection of TR in the first trimester increases the risk of CHD. However, isolated TR in the first trimester does not seem to be a strong predictor for CHD.
DOI: 10.17632/cpjcn35wpy
title: Experimental data on microstructure and characterization of LPBF-formed NdFeB

description: All data in the paper. Please use Jade 9.0, AZtec Crystal and other software to open
DOI: 10.17632/fg7w7ztt9m
title: LCR_in Divorce Proceedings

description: It collects data related to a new instrument focused on the lawyer-client relationship during divorce proceedings (LCR), together with sociodemographic data and other measures related to concurrent validity.
DOI: 10.6084/m9.figshare.19558675.v1
title: Data for: Regional asymmetry in the response of global vegetation productivity to compound events

description: This repository hosts the source data for creating figures 1-5 in Li et al., 2022 <br> Jun Li, Emanuele Bevacqua, Chi Chen, Zhaoli Wang*, Xiaohong Chen, Ranga B. Myneni, Xushu Wu, Chong-Yu Xu, Zhenxing Zhang, Jakob Zscheischler, 2022, Regional asymmetry in the response of global vegetation productivity to compound events. Communications earth & environment.
DOI: 10.6084/m9.figshare.2058918.v1
title: OMAE2016-54628 Rigid body displacements, velocities, accelerations: mean, std, min, max

description: In this comma separated value dataset the rigid body mean, standard deviation, min, and max displacements, velocities and accelerations, for each load case presented in the conference paper OMAE2016-54628, are presented. Please notice that these are the average over three wind and wave random realisations of their stochastic descriptions.