cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/odjx8b
title: Lista de taxones en el SIRAP-EC

description: Para el diseño e implementación de un SIRAP, es esencial conocer la biodiversidad regional. Este conocimiento de los patrones regionales de distribución de las especies, es importante para determinar las áreas de mayor diversidad, el grado de concentración de endemismos y los patrones de diversidad beta; es decir, la forma como cambia la composición de especies de acuerdo al gradiente altitudinal. Además, es importante tener información detallada de la distribución de las especies focales en la región.

Para caracterizar los patrones de biodiversidad regional en el Eje Cafetero se tuvo como punto de partida dos bases de datos. La primera es una recopilación de la información disponible sobre las localidades de registro de las especies que conforman la biota regional (inventarios básicos). La segunda base de datos consiste en los listados de especies potenciales para cada subregión del Eje Cafetero. La fuente de la información ha sido Fundación Ecoandina y WCS, que suministraron una base de datos digital con más de 35 mil registros (que representan 6974 especies de hongos, plantas y animales). A partir de esta base de datos se originó este listado de especies.
DOI: 10.15129/832c699e-9ab7-440c-8342-ba0034cd6c03
title: Comparative simulations of holography methods for ultracold atom trapping

description: Simulation results corresponding to results figures in the publication titled ‘Comparative simulations of holography methods for ultracold atom trapping'. Created with the aim to compare the use of spatial light modulators (SLMs) to Fresnel zone plates (FZPs) to create arbitrary light waveguides, specifically considering the Fresnel (lenless) holographic technique.
Data was created following the simulations outlined in the corresponding paper, using Matlab.

The data is saved as CSVs and is organised in folders according figure and subfigure. Cost array files (and figure 7’s propagation data) are saved with relevant axes below the data (alongside units and descriptions). For intensity distribution files and kinoform files, each data point corresponds to a pixel of size 1064nm X 1064nm.

Data is produced with funding from EPSRC, DSTL and Leverholme Trust. As such, the data is restricted until DSTL has given permission to publish in this form (as opposed to in figure form within the publication).
DOI: 10.15129/9da49e30-896d-43f5-9515-63bed987721c
title: Photoluminescence spectra obtained from magnesium-doped gallium nitride thin films implanted with europium ions

description: These files contain photoluminescence (PL) spectra measured at the University of Strathclyde from GaN(Mg):Eu thin film samples. Each file is in a tab-delimited ASCII text format, in which the first column contains wavelength values (in nanometres) and the subsequent column(s) contain PL intensity values (in CCD counts). Further analysis of this data has been published in the associated Applied Physics Letters article, and the file titles correspond to the figure numbers in this article.
DOI: 10.15468/4c1s5c
title: Leucon longirostris G. O. Sars in The Cumacea of the Puritan Expedition

description: This dataset contains the digitized treatments in Plazi based on the original journal article Calman, W. T. (1921): Leucon longirostris G. O. Sars in The Cumacea of the Puritan Expedition. Mittheilungen aus der Zoologischen Station zu Neapel 17: 414-416, DOI: 10.5281/zenodo.14941
DOI: 10.15468/hlytia
title: New Taxa of Cynoglossum L. from China (C. gansuense, C. Cynoglossum amabile Stapf et Dramm. var. pauciglochidiatum)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Liu, Yu-Lan (1981): New Taxa of Cynoglossum L. from China (C. gansuense, C. Cynoglossum amabile Stapf et Dramm. var. pauciglochidiatum). Acta Phytotaxonomica Sinica 11: 519-520, DOI: 10.5281/zenodo.12791
DOI: 10.15468/j7mu7p
title: Boraginaceae (Cynoglossum cherangauiense)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Verdcourt, B. (1991): Boraginaceae (Cynoglossum cherangauiense). Flora of Tropical East Africa 1991: 115-116, DOI: 10.5281/zenodo.12779
DOI: 10.15468/lghi50
title: A new species of Tyrannomyrmex (Hymenoptera: Formicidae) from Sri Lanka

description: This dataset contains the digitized treatments in Plazi based on the original journal article GARY D. ALPERT (2013): A new species of Tyrannomyrmex (Hymenoptera: Formicidae) from Sri Lanka. Zootaxa 3721 (3): 286-290, DOI: http://dx.doi.org/10.11646/zootaxa.3721.3.5
DOI: 10.15468/bgqdiw
title: Ouratea Aubl.

description: This dataset contains the digitized treatments in Plazi based on the original book chapter Aublet, Jean Baptiste Christophore Fusée (1775): Ouratea Aubl. In: Histoire des plantes de la Guiane Françoise. Tome III. Londres: Pierre-François Didot jeune: 397, DOI: 10.5281/zenodo.15089
DOI: 10.15468/enqcvw
title: A distinctive new species of gnatcatcher in the Polioptila guianensis complex (Aves, Polioptilidae) from western Amazonian Brazil

description: This dataset contains the digitized treatments in Plazi based on the original book chapter Whittacker, Andrew, Aleixo, Alexandre, Smith, Brian T., Klicka, J. (2013): A distinctive new species of gnatcatcher in the Polioptila guianensis complex (Aves, Polioptilidae) from western Amazonian Brazil. In: Handbook of the Birds of the Wold Special volume: new species and global index. Barcelona: Lynx Edicions: 301-305, ISBN: 978-84-96553-88-0, DOI: 10.5281/zenodo.15074
DOI: 10.15468/rhqrvo
title: Hieracium attenboroughianum (Asteraceae), a new species of hawkweed

description: This dataset contains the digitized treatments in Plazi based on the original journal article Rich, T. C. G. (2014): Hieracium attenboroughianum (Asteraceae), a new species of hawkweed. New Journal of Botany 4 (3): 172-175, DOI: 10.1179/2042349714Y.0000000051
DOI: 10.15468/s8epfw
title: Review and reclassification of Cataglyphis (Hymenoptera, Formicidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Agosti, Donat (1990): Review and reclassification of Cataglyphis (Hymenoptera, Formicidae). Journal of Natural History 24: 1457-1505, DOI: 10.5281/zenodo.14982
DOI: 10.6084/m9.figshare.22600352
title: Additional file 2 of Whole exome sequencing with a focus on cardiac disease-associated genes in families of sudden unexplained deaths in Yunnan, southwest of China

description: Additional file 2: Supplementary Figure 2. all SNVs InDels that meets quality control standards.
DOI: 10.6084/m9.figshare.22600352.v1
title: Additional file 2 of Whole exome sequencing with a focus on cardiac disease-associated genes in families of sudden unexplained deaths in Yunnan, southwest of China

description: Additional file 2: Supplementary Figure 2. all SNVs InDels that meets quality control standards.
DOI: 10.6084/m9.figshare.6350219.v1
title: Additional file 1: of Tracking antibiotic resistance gene pollution from different sources using machine-learning classification

description: Table S1. Metadata of 656 metagenomic datasets. Table S5. SourceTracker parameter adjustment. a Defined source input ratio in the three artificial configurations (A, B, and C). b Effect of parameter adjustment on SourceTracker prediction performance of configurations A, B, and C (indicated by RSD, sensitivity, specificity, precision, and accuracy). Table S6. Statistical details (IV and P value) of 95 indicator ARGs of the four ecotypes. (XLSX 78Â kb)
DOI: 10.6084/m9.figshare.22600397
title: Additional file 2 of Computational network analysis of host genetic risk variants of severe COVID-19

description: Additional file 2. List of the 109 genetic risk variants and 24 network mapping for severe COVID-19.
DOI: 10.6084/m9.figshare.22600403.v1
title: Additional file 3 of Computational network analysis of host genetic risk variants of severe COVID-19

description: Additional file 3. Enrichment analysis of the molecular functions of the 24 constructed networks.
DOI: 10.6084/m9.figshare.8969123
title: Additional file 5: of Estimation of immune cell content in tumor using single-cell RNA-seq reference data

description: Table S4. Cell-type specific marker genes identified from HNSC scRNA-seq data. (XLSX 304 kb)
DOI: 10.6084/m9.figshare.8969111.v1
title: Additional file 3: of Estimation of immune cell content in tumor using single-cell RNA-seq reference data

description: Table S2. Cell-type specific signature genes used in ssGSEA. (CSV 2 kb)
DOI: 10.6084/m9.figshare.8969108.v1
title: Additional file 2: of Estimation of immune cell content in tumor using single-cell RNA-seq reference data

description: Table S1. Patient origins of tumor and lymph node samples, related to Figure S1. (CSV 1 kb)
DOI: 10.6084/m9.figshare.8969129
title: Additional file 6: of Estimation of immune cell content in tumor using single-cell RNA-seq reference data

description: Table S5. The seven reference GEPs matrices constructed using scRNA-seq data, related to Additional file 1: Figure S5. (XLSX 640 kb)
DOI: 10.6084/m9.figshare.22600502
title: Additional file 2 of NUF2 promotes tumorigenesis by interacting with HNRNPA2B1 via PI3K/AKT/mTOR pathway in ovarian cancer

description: Additional file 2.
DOI: 10.6084/m9.figshare.22600502.v1
title: Additional file 2 of NUF2 promotes tumorigenesis by interacting with HNRNPA2B1 via PI3K/AKT/mTOR pathway in ovarian cancer

description: Additional file 2.
DOI: 10.6084/m9.figshare.22600508.v1
title: Additional file 4 of NUF2 promotes tumorigenesis by interacting with HNRNPA2B1 via PI3K/AKT/mTOR pathway in ovarian cancer

description: Additional file 4.
DOI: 10.6084/m9.figshare.22600508
title: Additional file 4 of NUF2 promotes tumorigenesis by interacting with HNRNPA2B1 via PI3K/AKT/mTOR pathway in ovarian cancer

description: Additional file 4.
DOI: 10.6084/m9.figshare.22600505.v1
title: Additional file 3 of NUF2 promotes tumorigenesis by interacting with HNRNPA2B1 via PI3K/AKT/mTOR pathway in ovarian cancer

description: Additional file 3.
DOI: 10.6084/m9.figshare.8969111
title: Additional file 3: of Estimation of immune cell content in tumor using single-cell RNA-seq reference data

description: Table S2. Cell-type specific signature genes used in ssGSEA. (CSV 2 kb)
DOI: 10.6084/m9.figshare.8969114
title: Additional file 10: of Discovery and characterization of the evolution, variation and functions of diversity-generating retroelements using thousands of genomes and metagenomes

description: Table S5. Species taxonomy of DGRs found in bacteria sequenced genomes URL: http://cgm.sjtu.edu.cn/index/pub/software/MetaCSST/supplementary/Supplementary_Table_5.xlsx (XLSX 51 kb)
DOI: 10.6084/m9.figshare.8969132
title: Additional file 13: of Discovery and characterization of the evolution, variation and functions of diversity-generating retroelements using thousands of genomes and metagenomes

description: Table S8. Overlapped VRs and ORFs. URL: http://cgm.sjtu.edu.cn/index/pub/software/MetaCSST/supplementary/Supplementary_Table_8.xlsx (XLSX 58 kb)
DOI: 10.4121/b9d1de57-6831-493e-a856-747b32d19f30
title: Data underlying the research of Positive Displacement Reversible Pump-Turbine - Mechanical Load

description: Inside EU Horizon 2020 project: ALPHEUS, a Positive Displacement Reversible Pump-Turbine is studied as potential use for low-head pumped hydro storage applications. This dataset includes the setup to retrieve the surface pressure on a reversible lobe pump-turbine, which is further applied as boundary condition to assess the mechanical loads and displacements in ANSYS Mechanical. Maximum surface pressure on the lobe pump-turbine during one revolution is calculated using ANSYS CFX and TwinMesh.
DOI: 10.4121/b9d1de57-6831-493e-a856-747b32d19f30.v1
title: Data underlying the research of Positive Displacement Reversible Pump-Turbine - Mechanical Load

description: Inside EU Horizon 2020 project: ALPHEUS, a Positive Displacement Reversible Pump-Turbine is studied as potential use for low-head pumped hydro storage applications. This dataset includes the setup to retrieve the surface pressure on a reversible lobe pump-turbine, which is further applied as boundary condition to assess the mechanical loads and displacements in ANSYS Mechanical. Maximum surface pressure on the lobe pump-turbine during one revolution is calculated using ANSYS CFX and TwinMesh.
DOI: 10.6084/m9.figshare.8969150.v1
title: Additional file 17: of Discovery and characterization of the evolution, variation and functions of diversity-generating retroelements using thousands of genomes and metagenomes

description: Data 3. 948 non-redundant DGRs from genomic and metagenomic datasets. URL: http://cgm.sjtu.edu.cn/index/pub/software/MetaCSST/supplementary/Supplementary_Data_3.gtf (GTF 2105 kb)
DOI: 10.6084/m9.figshare.22600505
title: Additional file 3 of NUF2 promotes tumorigenesis by interacting with HNRNPA2B1 via PI3K/AKT/mTOR pathway in ovarian cancer

description: Additional file 3.
DOI: 10.6084/m9.figshare.8969117
title: Additional file 4: of Estimation of immune cell content in tumor using single-cell RNA-seq reference data

description: Table S3. Differentially expressed genes between T cell subtypes, related to Fig. 2. Differentially expressed genes between CD4+ T cell subtypes in sheet 1. Differentially expressed genes between CD8+ T cell subtypes in sheet 2. (XLSX 132 kb)
DOI: 10.6084/m9.figshare.8969126
title: Additional file 12: of Discovery and characterization of the evolution, variation and functions of diversity-generating retroelements using thousands of genomes and metagenomes

description: Table S7. DGRs with huge variation and short CCS in TR-VR pairs. URL: http://cgm.sjtu.edu.cn/index/pub/software/MetaCSST/supplementary/Supplementary_Table_7.xlsx (XLSX 50 kb)
DOI: 10.6084/m9.figshare.8969138.v1
title: Additional file 15: of Discovery and characterization of the evolution, variation and functions of diversity-generating retroelements using thousands of genomes and metagenomes

description: Data 1. DGRs identified in genomic and metagenomic datasets. URL: http://cgm.sjtu.edu.cn/index/pub/software/MetaCSST/supplementary/Supplementary_Data_1.zip (ZIP 3330 kb)
DOI: 10.6084/m9.figshare.8969123.v1
title: Additional file 5: of Estimation of immune cell content in tumor using single-cell RNA-seq reference data

description: Table S4. Cell-type specific marker genes identified from HNSC scRNA-seq data. (XLSX 304 kb)
DOI: 10.6084/m9.figshare.8969108
title: Additional file 2: of Estimation of immune cell content in tumor using single-cell RNA-seq reference data

description: Table S1. Patient origins of tumor and lymph node samples, related to Figure S1. (CSV 1 kb)
DOI: 10.6084/m9.figshare.8969117.v1
title: Additional file 4: of Estimation of immune cell content in tumor using single-cell RNA-seq reference data

description: Table S3. Differentially expressed genes between T cell subtypes, related to Fig. 2. Differentially expressed genes between CD4+ T cell subtypes in sheet 1. Differentially expressed genes between CD8+ T cell subtypes in sheet 2. (XLSX 132 kb)
DOI: 10.6084/m9.figshare.8969129.v1
title: Additional file 6: of Estimation of immune cell content in tumor using single-cell RNA-seq reference data

description: Table S5. The seven reference GEPs matrices constructed using scRNA-seq data, related to Additional file 1: Figure S5. (XLSX 640 kb)
DOI: 10.6084/m9.figshare.8969135
title: Additional file 14: of Discovery and characterization of the evolution, variation and functions of diversity-generating retroelements using thousands of genomes and metagenomes

description: Table S9. Matching result of target genes in nr database. URL: http://cgm.sjtu.edu.cn/index/pub/software/MetaCSST/supplementary/Supplementary_Table_9.xlsx (XLSX 542 kb)
DOI: 10.6084/m9.figshare.8969138
title: Additional file 15: of Discovery and characterization of the evolution, variation and functions of diversity-generating retroelements using thousands of genomes and metagenomes

description: Data 1. DGRs identified in genomic and metagenomic datasets. URL: http://cgm.sjtu.edu.cn/index/pub/software/MetaCSST/supplementary/Supplementary_Data_1.zip (ZIP 3330 kb)
DOI: 10.6084/m9.figshare.8969198
title: Additional file 6: of Discovery and characterization of the evolution, variation and functions of diversity-generating retroelements using thousands of genomes and metagenomes

description: Table S1. Evaluation of MetaCSST. URL: http://cgm.sjtu.edu.cn/index/pub/software/MetaCSST/supplementary/Supplementary_Table_1.xlsx (XLSX 9 kb)
DOI: 10.6084/m9.figshare.8969120
title: Additional file 11: of Discovery and characterization of the evolution, variation and functions of diversity-generating retroelements using thousands of genomes and metagenomes

description: Table S6. Result of chi-square test. URL: http://cgm.sjtu.edu.cn/index/pub/software/MetaCSST/supplementary/Supplementary_Table_6.xlsx (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8969150
title: Additional file 17: of Discovery and characterization of the evolution, variation and functions of diversity-generating retroelements using thousands of genomes and metagenomes

description: Data 3. 948 non-redundant DGRs from genomic and metagenomic datasets. URL: http://cgm.sjtu.edu.cn/index/pub/software/MetaCSST/supplementary/Supplementary_Data_3.gtf (GTF 2105 kb)
DOI: 10.6084/m9.figshare.8969204
title: Additional file 7: of Discovery and characterization of the evolution, variation and functions of diversity-generating retroelements using thousands of genomes and metagenomes

description: Table S2. DGRs and TR-VR pairs discovered by MetaCSST in human gut virome, which were omitted by DGRscan. URL: http://cgm.sjtu.edu.cn/index/pub/software/MetaCSST/supplementary/Supplementary_Table_2.xlsx (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8969147
title: Additional file 16: of Discovery and characterization of the evolution, variation and functions of diversity-generating retroelements using thousands of genomes and metagenomes

description: Data 2. 656 unique DGRs from human microbiomes. URL: http://cgm.sjtu.edu.cn/index/pub/software/MetaCSST/supplementary/Supplementary_Data_2.gtf (GTF 881 kb)
DOI: 10.6084/m9.figshare.22600420.v1
title: Additional file 10 of Hypoxia induces alterations in tRNA modifications involved in translational control

description: Additional file 10: Table S1-S5. Data for RNA modification levels in different RNA classes across normal control group mouse tissues. Table S1. Original data for RNA modification levels in total RNA of normal control mouse tissues. Table S2. Original data for RNA modification levels in tRNA-enriched RNA fragments of normal control mouse tissues. Table S3. Original data for RNA modification levels in 17-50 nt sncRNAs of normal control mouse tissues. Table S4. Original data for RNA modification levels in PolyA-enriched RNA of normal control mouse tissues. Table S5. Original data for RNA modification levels in liver single tRNA of normal control mouse tissues.
DOI: 10.6084/m9.figshare.22600429.v1
title: Additional file 13 of Hypoxia induces alterations in tRNA modifications involved in translational control

description: Additional file 13: Table S11-S12. Data for GC-2spd growth analysis. Table S11. Fold change data for cell number of GC-2spd growth analysis. Table S12. CCK8 data for GC-2spd growth analysis.
DOI: 10.6084/m9.figshare.8969195
title: Additional file 1: of Honey bee (Apis mellifera) larval pheromones may regulate gene expression related to foraging task specialization

description: Table S1. Transcriptome assembly quality metrics averaged across four technical replicates per sample, given in numbers of sequences per sample and as percentages of original sequencing reads per sample. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.8969195.v1
title: Additional file 1: of Honey bee (Apis mellifera) larval pheromones may regulate gene expression related to foraging task specialization

description: Table S1. Transcriptome assembly quality metrics averaged across four technical replicates per sample, given in numbers of sequences per sample and as percentages of original sequencing reads per sample. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.8969210
title: Additional file 8: of Discovery and characterization of the evolution, variation and functions of diversity-generating retroelements using thousands of genomes and metagenomes

description: Table S3. Data information of human metagenomic datasets. URL: http://cgm.sjtu.edu.cn/index/pub/software/MetaCSST/supplementary/Supplementary_Table_3.xlsx (XLSX 10 kb)
DOI: 10.6084/m9.figshare.20502020.v1
title: Additional file 1 of Structure and character analysis of cotton response regulator genes family reveals that GhRR7 responses to draught stress

description: Additional file 1: Table S1. The primers used for experiment in this study. Table S2. Information of RR genes in different species. Table S3. Information of the cotton RR genes in this study. Table S4. Collinearity analyses of RR genes family in four cotton species. Table S5. Analysis of GhRRs cis-elements. Table S6. RNA-Seq data analysis of GhRRs expression profiling in different stresses. Table S7. RNA-Seq data analysis of GhRRs expression profiling in different tissues.
DOI: 10.6084/m9.figshare.8969207
title: Additional file 3: of Honey bee (Apis mellifera) larval pheromones may regulate gene expression related to foraging task specialization

description: Table S3. Dictionary of transcripts, Entrez Gene ID, BeeBase ID, and Accession numbers for all transcripts in the study. (CSV 1759 kb)
DOI: 10.6084/m9.figshare.8969201.v1
title: Additional file 2: of Honey bee (Apis mellifera) larval pheromones may regulate gene expression related to foraging task specialization

description: Table S2. Entrez gene IDs of differentially up-regulated and down regulated genes in the context of pheromone exposure, foraging task-specialization, and their interaction. (CSV 454 kb)
DOI: 10.6084/m9.figshare.8969207.v1
title: Additional file 3: of Honey bee (Apis mellifera) larval pheromones may regulate gene expression related to foraging task specialization

description: Table S3. Dictionary of transcripts, Entrez Gene ID, BeeBase ID, and Accession numbers for all transcripts in the study. (CSV 1759 kb)
DOI: 10.6084/m9.figshare.17205229
title: Additional file 2 of Proteomic and biochemical responses to different concentrations of CO2 suggest the existence of multiple carbon metabolism strategies in Phaeodactylum tricornutum

description: Additional file 2: Table S2. Predicted subcellular localization of partial proteins from pathways of interest in P. tricornutum. Data are shown for enzymes putatively involved in biochemical C4 pathways, central carbon metabolism, photorespiration, the ornithine–urea cycle, and fatty acid synthesis. Protein expression at LC and HC conditions here are noted as Up or Down, and those not quantified in either replicate proteome are indicated by ND. Predictions of signal peptides, chloroplast transit peptides, mitochondrial targeting, and targeting based on a heterokont-trained HMM utilized the following programs: http://www.cbs.dtu.dk/services/SignalP/ , http://www.cbs.dtu.dk/services/ChloroP/ , http://www.cbs.dtu.dk/services/TargetP/ , http://ihg.gsf.de/ihg/mitoprot.html , https://webtools.sb-roscoff.fr/root?tool_id=abims_hectar . Hypothesized locations are given based on data derived from the five programs and those with majority consensus were chosen as the predicted localization for a particular protein.
DOI: 10.6084/m9.figshare.8969219
title: Additional file 9: of Discovery and characterization of the evolution, variation and functions of diversity-generating retroelements using thousands of genomes and metagenomes

description: Table S4. Coverage depth for DGRs with WGS data. URL: http://cgm.sjtu.edu.cn/index/pub/software/MetaCSST/supplementary/Supplementary_Table_4.xlsx (XLSX 250 kb)