cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27861372
title: Shallow-water Mussels (<i>Mytilus galloprovincialis</i>) Adapt to Deep-Sea Environment Through Transcriptomic and Metagenomic Insights

description: Recent studies have unveiled the deep sea as a rich biosphere, populated by species descended from shallow-water ancestors post-mass extinctions. Research on genomic evolution and microbial symbiosis has shed light on how these species thrive in extreme deep-sea conditions. However, early adaptation stages, particularly the roles of conserved genes and symbiotic microbes, remain inadequately understood. This study examined transcriptomic and microbiome changes in shallow-water mussels <i>Mytilus galloprovincialis</i> exposed to deep-sea conditions at the Site-F cold seep in the South China Sea. Results reveal complex gene expression adjustments in stress response, immune defense, homeostasis, and energy metabolism pathways during adaptation. After 10 days of deep-sea exposure, shallow-water mussels and their microbial communities closely resembled those of native deep-sea mussels, demonstrating host and microbiome convergence in response to adaptive shifts. Notably, methanotrophic bacteria, key symbionts in native deep-sea mussels, emerged as a dominant group in the exposed mussels. Host genes involved in immune recognition and endocytosis correlated significantly with the abundance of these bacteria. Overall, our analyses provide insights into adaptive transcriptional regulation and microbiome dynamics of mussels in deep-sea environments, highlighting the roles of conserved genes and microbial community shifts in adapting to extreme environments.
DOI: 10.6084/m9.figshare.27861372.v1
title: Shallow-water Mussels (<i>Mytilus galloprovincialis</i>) Adapt to Deep-Sea Environment Through Transcriptomic and Metagenomic Insights

description: Recent studies have unveiled the deep sea as a rich biosphere, populated by species descended from shallow-water ancestors post-mass extinctions. Research on genomic evolution and microbial symbiosis has shed light on how these species thrive in extreme deep-sea conditions. However, early adaptation stages, particularly the roles of conserved genes and symbiotic microbes, remain inadequately understood. This study examined transcriptomic and microbiome changes in shallow-water mussels <i>Mytilus galloprovincialis</i> exposed to deep-sea conditions at the Site-F cold seep in the South China Sea. Results reveal complex gene expression adjustments in stress response, immune defense, homeostasis, and energy metabolism pathways during adaptation. After 10 days of deep-sea exposure, shallow-water mussels and their microbial communities closely resembled those of native deep-sea mussels, demonstrating host and microbiome convergence in response to adaptive shifts. Notably, methanotrophic bacteria, key symbionts in native deep-sea mussels, emerged as a dominant group in the exposed mussels. Host genes involved in immune recognition and endocytosis correlated significantly with the abundance of these bacteria. Overall, our analyses provide insights into adaptive transcriptional regulation and microbiome dynamics of mussels in deep-sea environments, highlighting the roles of conserved genes and microbial community shifts in adapting to extreme environments.
DOI: 10.15468/dl.yppxhg
title: Occurrence Download

description: A dataset containing 1968 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "OccurrenceStatus is Present",
 "TaxonKey is Anthus nilghiriensis Sharpe, 1885"
 ]
}

 The dataset includes 1968 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025596-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a2a6rm
title: Occurrence Download

description: A dataset containing 521 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Observation",
 "Continent is Europe",
 "GadmGid is one of (ESP, FRA, AND)",
 "TaxonKey is Aconitum napellus L."
 ]
}

 The dataset includes 521 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025599-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fjs5gd
title: Occurrence Download

description: A dataset containing 1569 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fissurellidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1569 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025598-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.67wjbc
title: Occurrence Download

description: A dataset containing 2434 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Spiranthes sinensis (Pers.) Ames"
 ]
}

 The dataset includes 2434 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025600-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jv96wq
title: Occurrence Download

description: A dataset containing 189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acteonidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 189 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025601-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hccpd5
title: Occurrence Download

description: A dataset listing the 36784 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is one of (United States of America, Canada)",
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Insecta"
 ]
}

 The dataset's 36784 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025592-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5fj29r0d
title: MassIVE MSV000096481 - LC-MS data of trypsin-digested human serum albumin treated with different concentrations of nateglinide followed by the addition of acetyl CoA
title: To study the acetylation of human serum albumin (HSA) with acetyl CoA in the presence and absence of Nateglinide, the LC-MS study was carried out. This is a part of ICMR, New Delhi, India, sanctioned project titled Pseudoesterase activity of albumin as a determinant for serum cholesterol in rabbits. Sample processing protocol: For this, 1 ml of 1 mg/ml solution of fatty acid free human albumin (SIGMA) in 10 mM Tris HCl buffer, pH 7.38 was incubated for 1 hour with different concentrations of Nateglinide (prepared in DMSO) followed by incubation with 495 micromolar acetyl CoA (prepared in MilliQ water) in separate aliquots for 2 hours at 37 degree Celcius. Control albumin solution was added with appropriate DMSO and MilliQ water and incubated under similar conditions. 100 microlitre of each aliquot was denatured by boiling with 10 mM dithiothreitol for 10 mins followed by the addition of Iodoacetamide (90 mM, SIGMA) and incubation for 30 mins in the dark at 37 dgree celsius. These were then subjected to trypsin digestion (2 microgram, Promega, MS grade, prepared in acetic acid) and kept overnight at 37 degree celsius. The reaction was stopped by the addition of 1 percent trifluoroacetic acid (TCI, LC-MS grade). The sample clean-up with C18 resins column was performed and the aliquots were then sent for data acquisition. Data Processing protocol: The MaxQuant software (2.0.3.1) was used for the analysis of data. Under group-specific parameters acetyl K, acetyl (N-term), and (acetyl protein N-term) were selected as variable modifications whereas the Carbamidomethyl (C) was considered a fixed modification. The label-free quantification was done and the albumin sequence file (accession P02768) was taken as a reference for understanding the analysis. For digestion, trypsin/P type was selected with all other parameters considered as default. The different raw files obtained are named as follows and uploaded. S1 HSA plus Nateglinide 400 micromolar plus Acetyl CoA 495 micromolar S2 HSA plus Nateglinide 200 micromolar plus Acetyl CoA 495 micromolar S3 HS plus Nateglinide 50 micromolar plus Acetyl CoA 495 micromolar S4 HSA plus Acetyl CoA 495 micromolar S5 HSA only
DOI: 10.15468/dl.c5j9dw
title: Occurrence Download

description: A dataset containing 6761 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Naviculaceae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6761 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025602-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u9eq9g
title: Occurrence Download

description: A dataset containing 705 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhaphoneidaceae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 705 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025603-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14192619
title: Data - On‐Surface Synthesis of Organolanthanide Sandwich Complexes

description: STM/STS and XPS data acquried at IMDEA Nanociencia laboratories. The software to open the STP files is WSxM.
DOI: 10.5281/zenodo.14192620
title: Data - On‐Surface Synthesis of Organolanthanide Sandwich Complexes

description: STM/STS and XPS data acquried at IMDEA Nanociencia laboratories. The software to open the STP files is WSxM.
DOI: 10.15468/dl.t3sdk5
title: Occurrence Download

description: A dataset listing the 366596 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "TaxonKey is Insecta"
 ]
}

 The dataset's 366596 records were derived from 1786 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025597-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.745920
title: (Table 6) Isotopic composition of carbon in tissues of mollusks from hydrothermal fields at the axis of the East Pacific Rise near 9°50'N
DOI: 10.1594/pangaea.835606
title: Mg/Ca values for planktonic foraminifera N. pachyderma from ocean sediment core MD02-2496

description: Depth is corrected.
DOI: 10.1594/pangaea.782400
title: (Table 4-1) Abundance of sulfate reducing bacteria, sulfate reduction rate and isotope compositions of sulfur in Atlantic bottom sediments of the Benguela upwelling area along 17°S
DOI: 10.1594/pangaea.789010
title: (Table 5) Results of Sm-Nd isotope study of Late Quaternary lavas from the Elbrus Volcano
DOI: 10.1594/pangaea.753851
title: (Table 1c) Oxygen isotopic composition in tests of planktonic foraminiferas from Core ML1_66
DOI: 10.1594/pangaea.802823
title: (Table 2) Geochemistry at DSDP Hole 86-581
DOI: 10.1594/pangaea.771534
title: (Table 8.3.21) Isotopic composition of carbon and oxygen of dipersed and authigenic carbonates from the Haakon Mosby mud volcano, Norwegian Sea
DOI: 10.1594/pangaea.820839
title: Stable isotopes measured on sediment core PS75/103-1
DOI: 10.1594/pangaea.861973
title: Stable isotopes, radionuclides, and calculated sea surface temperature of sediment core ANSIC-03_407
DOI: 10.1594/pangaea.756083
title: (Table 1a) Chemical and isotopic composition of waters from the Yankicha Island and Kraternaya Bay at the thermal spring site I
DOI: 10.1594/pangaea.910784
title: Bulk sediment stable carbon and oxygen isotope records of IODP Hole 353-U1443A

description: Further details of the adjustment that was applied to the carbon isotope data can be found in the supplementary information to the manuscript.
DOI: 10.1594/pangaea.910783
title: Bulk sediment stable carbon and oxygen isotope records of ODP Hole 121-758A

description: Further details of the adjustment that was applied to the carbon isotope data can be found in the supplementary information to the manuscript.
DOI: 10.1594/pangaea.778494
title: (Appendix B1) Minor element concentration in ODP Hole 129-800A sediments
DOI: 10.1594/pangaea.792716
title: (Table 3) Sr, Nd and Pb isotopic ratios in Neogene basalts from Spitsbergen
DOI: 10.1594/pangaea.835182
title: Foraminiferal records of Globigerinoides ruber from sediment core WIND28K
DOI: 10.1594/pangaea.818206
title: δ¹⁸O and δ¹³C obtained on Uvigerina peregrina of ODP Hole 172-1058C

description: DEPTH, sediment/rock = Depth (mcd)
DOI: 10.1594/pangaea.864437
title: Stable isotopes and Mg/Ca measured on multinet samples at station SO225_21
DOI: 10.1594/pangaea.909063
title: Seawater carbonate chemistry and carbon, oxygen and boron isotopes within Ochrosphaera neapolitana

description: Ocean acidification will potentially inhibit calcification by marine organisms; however, the response of the most prolific ocean calcifiers, coccolithophores, to this perturbation remains under characterized. Here we report novel chemical constraints on the response of the widespread coccolithophore species Ochrosphaera neapolitana (O. neapolitana) to changing-CO2 conditions. We cultured this algae under three pCO2-controlled seawater pH conditions (8.05, 8.22, and 8.33). Boron isotopes within the algae's extracellular calcite plates show that this species maintains a constant pH at the calcification site, regardless of CO2-induced changes in pH of the surrounding seawater. Carbon and oxygen isotopes in the algae's calcite plates and carbon isotopes in the algae's organic matter suggest that O. neapolitana utilize carbon from a single internal dissolved inorganic carbon (DIC) pool for both calcification and photosynthesis, and that a greater proportion of dissolved CO2 relative to HCO3− enters the internal DIC pool under acidified conditions. These two observations may explain how O. neapolitana continues calcifying and photosynthesizing at a constant rate under different atmospheric-pCO2 conditions.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2019-11-20.
description: Supplement to: Liu, Yiwei; Eagle, Robert A; Aciego, Sarah M; Gilmore, Rosaleen E; Ries, Justin B (2018): A coastal coccolithophore maintains pH homeostasis and switches carbon sources in response to ocean acidification. Nature Communications, 9(1)
DOI: 10.1594/pangaea.756085
title: (Table 1c) Chemical and isotopic composition of waters from the Yankicha Island and Kraternaya Bay at the thermal spring site III
DOI: 10.1594/pangaea.774603
title: (Table 10) Concentration and isotope composition of helium in fluide inclusions from sulfides and rocks of the Rainbow hydrothermal field
DOI: 10.1594/pangaea.770285
title: (Fig. 7) Stable oxygen isotopes and deuterium excess of ice core VF79_core2 from the Vernagtferner
DOI: 10.1594/pangaea.820817
title: (Table 2) δ¹⁸O, δ¹³C of calcite and d34S of pyrite in volcanic breccia and tuff, at DSDP Site 59-448

description: Sediment depth is given in mbsf. Empty cells mean no data.
DOI: 10.1594/pangaea.899156
title: Water isotopes (δ¹⁸O) of firn core RID-75 from Roosevelt Island drilled in austral summer 1974/75
DOI: 10.1594/pangaea.816377
title: (Table 4) Oxygen isotope composition of the carbonate fraction of sediments from DSDP Hole 68-501
DOI: 10.1594/pangaea.817037
title: Carbon dioxide measured on water bottle during TYRO cruise NAPP89-1
DOI: 10.1594/pangaea.757606
title: (Table 2) Isotopic composition of interstitial waters in the area of gas plumes, Sea of Okhotsk
DOI: 10.1594/pangaea.816323
title: (Table 1) δ¹⁸O, lithologies, and mineralogy of DSDP Site 69-504 silicified rocks

description: Calcite removed from all samples before isotopic analysis.
DOI: 10.1594/pangaea.761075
title: (Table 2) Oxygen isotopic composition in calcium carbonate of tests of planktonic foraminifera assemblage in Core ML2_66
DOI: 10.1594/pangaea.777540
title: (Table 3) Age marks in bottom sediments of the Transpacific profile
DOI: 10.1594/pangaea.809745
title: (Table 1) δ¹³C-methane from pressure core barrel at DSDP Hole 76-533
DOI: 10.1594/pangaea.762079
title: (Table 2) Oxygen- and carbon isotopic compositions in Core AMK4-316GC
DOI: 10.1594/pangaea.808787
title: (Table 3) Gas composition and d15N of gas removed from core-liner gas pockets at DSDP Hole 78-541
DOI: 10.1594/pangaea.757772
title: (Table 3) Isotopic composition of sediment components at Station Vy8-795
DOI: 10.1594/pangaea.819157
title: (Table 3) Temporal variations in areal nitrogen fixation rate from monthly sampling in 2006-2007 at stations TB200 and TB1000 west of Herzelia

description: Areal rates were calculated from 15N2 uptake measurements for at least four depths (three replicates per depth) and integrated from surface to 150 m depth. Also presented are isotopic compositions (d15N) of particulate matter averaged from non-spiked samples at the four depths (n= 8 per month).
DOI: 10.1594/pangaea.910785
title: Planktic foraminifera stable carbon and oxygen isotope records of ODP Hole 121-758A
DOI: 10.1594/pangaea.912757
title: Revised stable isotope analysis for the late Pliocene composite section from different Holes of ODP SIte 138-846

description: Stable isotopic values obtained for the mid to late Pliocene section of Site 138-846. Values are a composite of data previously reported by Shackleton et al. ( Shackleton N, Hall, M.A. and Pate, D.. Pliocene stable isotope stratigraphy of Site 846. Proc ODP, Sci Results. 1995;138:337-55.) and new values obtained at Brown University. The Brown University data are consistently offset by an average of 0.14 o/oo in delta 18O, so that values are also reported after interlaboratory adjustment to align with the Shackleton data set.
DOI: 10.1594/pangaea.974560
title: Accumulation measurements from stake farm Neumayer Pegelfeld Süd, Ekström Ice Shelf, Antarctica, 2017

description: This publication series contains the accumulation measurements from stake farm Pegelfeld Süd on the Ekström Ice Shelf, Antarctica. The stake farm, located approximately 6 km to the southwest from the past and present Neumayer Station, has been in operation since December 1990. It consists of 16 aluminum poles (balise), placed in a grid of 4 x 4. Readings have been carried out in bi-weekly to monthly intervals by the overwintering staff of the air chemistry observatory (Spuso). Each data set in the series contains all measurements of each stake from one calendar year in a csv file, the average accumulation of the stake farm for each measurement and the standard deviation of the stake farm for each measurement. The data sets are accompanied by figures illustrating the development of the cumulative accumulation since the beginning of the measurements to date, a bar chart of the monthly accumulation for the year and a collection of panels (one panel per measurement) illustrating the variation of accumulation within the stake farm.
DOI: 10.1594/pangaea.974561
title: Accumulation measurements from stake farm Neumayer Pegelfeld Süd, Ekström Ice Shelf, Antarctica, 2016

description: This publication series contains the accumulation measurements from stake farm Pegelfeld Süd on the Ekström Ice Shelf, Antarctica. The stake farm, located approximately 6 km to the southwest from the past and present Neumayer Station, has been in operation since December 1990. It consists of 16 aluminum poles (balise), placed in a grid of 4 x 4. Readings have been carried out in bi-weekly to monthly intervals by the overwintering staff of the air chemistry observatory (Spuso). Each data set in the series contains all measurements of each stake from one calendar year in a csv file, the average accumulation of the stake farm for each measurement and the standard deviation of the stake farm for each measurement. The data sets are accompanied by figures illustrating the development of the cumulative accumulation since the beginning of the measurements to date, a bar chart of the monthly accumulation for the year and a collection of panels (one panel per measurement) illustrating the variation of accumulation within the stake farm.
DOI: 10.1594/pangaea.974565
title: Accumulation measurements from stake farm Neumayer Pegelfeld Süd, Ekström Ice Shelf, Antarctica, 2012

description: This publication series contains the accumulation measurements from stake farm Pegelfeld Süd on the Ekström Ice Shelf, Antarctica. The stake farm, located approximately 6 km to the southwest from the past and present Neumayer Station, has been in operation since December 1990. It consists of 16 aluminum poles (balise), placed in a grid of 4 x 4. Readings have been carried out in bi-weekly to monthly intervals by the overwintering staff of the air chemistry observatory (Spuso). Each data set in the series contains all measurements of each stake from one calendar year in a csv file, the average accumulation of the stake farm for each measurement and the standard deviation of the stake farm for each measurement. The data sets are accompanied by figures illustrating the development of the cumulative accumulation since the beginning of the measurements to date, a bar chart of the monthly accumulation for the year and a collection of panels (one panel per measurement) illustrating the variation of accumulation within the stake farm.
DOI: 10.1594/pangaea.974564
title: Accumulation measurements from stake farm Neumayer Pegelfeld Süd, Ekström Ice Shelf, Antarctica, 2013

description: This publication series contains the accumulation measurements from stake farm Pegelfeld Süd on the Ekström Ice Shelf, Antarctica. The stake farm, located approximately 6 km to the southwest from the past and present Neumayer Station, has been in operation since December 1990. It consists of 16 aluminum poles (balise), placed in a grid of 4 x 4. Readings have been carried out in bi-weekly to monthly intervals by the overwintering staff of the air chemistry observatory (Spuso). Each data set in the series contains all measurements of each stake from one calendar year in a csv file, the average accumulation of the stake farm for each measurement and the standard deviation of the stake farm for each measurement. The data sets are accompanied by figures illustrating the development of the cumulative accumulation since the beginning of the measurements to date, a bar chart of the monthly accumulation for the year and a collection of panels (one panel per measurement) illustrating the variation of accumulation within the stake farm.