cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.930559
title: Seawater carbonate chemistry and growth rates for coral fragments from the species Porites compressa and Montipora capitata

description: Coral reefs are susceptible to climate change, anthropogenic influence, and environmental stressors. However, corals in Kāneʻohe Bay, Hawaiʻi have repeatedly shown resilience and acclimatization to anthropogenically-induced rising temperatures and increased frequencies of bleaching events. Variations in coral and algae cover at two sites-just 600 m apart-at Malaukaʻa fringing reef suggest genetic or environmental differences in coral resilience between sites. A reciprocal transplant experiment was conducted to determine if calcification (linear extension and dry skeletal weight) for dominant reef-building species, Montipora capitata and Porites compressa, varied between the two sites and whether or not parent colony or environmental factors were responsible for the differences. Despite the two sites representing distinct environmental conditions with significant differences between temperature, salinity, and aragonite saturation, M. capitata growth rates remained the same between sites and treatments. However, dry skeletal weight increases in P. compressa were significantly different between sites, but not across treatments, with linear mixed effects model results suggesting heterogeneity driven by environmental differences between sites and the parent colonies. These results provide evidence of resilience and acclimatization for M. capitata and P. compressa. Variability of resilience may be driven by local adaptations at a small, reef-level scale for P. compressa in Kāneʻohe Bay.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-04-19.
DOI: 10.15468/dl.6dy9fq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
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 "TaxonKey is Vitreledonellidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015875-241107131044228/datasets/export for details.
DOI: 10.1594/pangaea.873540
title: Antioxidant response of the hard shelled mussel Mytilus coruscus exposed to reduced pH and oxygen concentration

description: Ocean acidification (OA) and hypoxic events are increasing worldwide problems, their interactive effects have not been well clarified, although their co-occurrence is prevalent. The East China Sea (the Yangtze River estuary area) suffers from not only coastal hypoxia but also pH fluctuation, representing an ideal study site to explore the combined effect of OA and hypoxia on marine bivalves. We experimentally evaluated the antioxidant response of the mussel Mytilus coruscus exposed to three pH levels (8.1, 7.7 and 7.3) at two dissolved oxygen (DO) levels (2.0 mg/L and 6.0 mg/L) for 72h. Activities of superoxide dismutase, catalase, glutathione peroxidase, acid phosphatase, and alkaline phosphatase and levels of malondialdehyde were measured in gills and hemolymph. All enzymatic activities in hemolymph and gills followed a similar pattern throughout the experiment duration. Generally, low DO showed greater effects on enzyme activities than elevated CO2. Significant interactions between DO, pH and time were only observed at superoxide dismutase and catalase in both tissues. PCA revealed positive relationships between most enzyme activities in both gills and hemolymph with the exception of alkaline phosphatase activity and the level of malondialdehyde in the hemolymph. Overall, our results suggested that decreased pH and low DO induced similar antioxidant responses in the hard shelled mussel, and showed an additive effect on most enzyme activities. The evaluation of multiple environmental stressors, a more realistic scenario than single ones, is crucial to predict the effect of future global changes on coastal species and our results supply some insights on the potential combined effects of reduced pH and DO on marine bivalves.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2017-03-15.
description: Supplement to: Sui, Yanming; Hu, Menghong; Shang, Yueyong; Wu, Fangli; Huang, Xizhi; Dupont, Sam; Storch, Daniela; Pörtner, Hans-Otto; Li, Jiale; Lu, Weiqun; Wang, Youji (2017): Antioxidant response of the hard shelled mussel Mytilus coruscus exposed to reduced pH and oxygen concentration. Ecotoxicology and Environmental Safety, 137, 94-102
DOI: 10.1594/pangaea.935477
title: Seawater carbonate chemistry and skeletal density of hardground-forming high-latitude Crustose Coralline Algae

description: Crustose coralline algae (CCA) function as foundation species by creating marine carbonate hardground habitats. High‐latitude species may be vulnerable to regional warming and acidification. Here, we report the results of an experiment investigating the impacts of CO2‐induced acidification (pCO2 350, 490, 890, 3200 µatm) and temperature (6.5, 8.5, 12.5°C) on the skeletal density of two species of high‐latitude CCA: Clathromorphum compactum (CC) and C. nereostratum (CN). Skeletal density of both species significantly declined with pCO2. In CN, the density of previously deposited skeleton declined in the highest pCO2 treatment. This species was also unable to precipitate new skeleton at 12.5°C, suggesting that CN will be particularly sensitive to future warming and acidification. The decline in skeletal density exhibited by both species under future pCO2 conditions could reduce their skeletal strength, potentially rendering them more vulnerable to disturbance, and impairing their production of critical habitat in high‐latitude systems.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-09-03.
DOI: 10.1594/pangaea.846486
title: The effects of elevated CO2 on the growth and toxicity of field populations and cultures of the saxitoxin-producing dinoflagellate, Alexandrium fundyense

description: The effects of coastal acidification on the growth and toxicity of the saxitoxin-producing dinoflagellate Alexandrium fundyense were examined in culture and ecosystem studies. In culture experiments, Alexandrium strains isolated from Northport Bay, New York, and the Bay of Fundy, Canada, grew significantly faster (16-190%; p &lt; 0.05) when exposed to elevated levels of PCO2 ( 90-190 Pa=900-1900 µatm) compared to lower levels ( 40 Pa=400 µatm). Exposure to higher levels of PCO2 also resulted in significant increases (71-81%) in total cellular toxicity (fg saxitoxin equivalents/cell) in the Northport Bay strain, while no changes in toxicity were detected in the Bay of Fundy strain. The positive relationship between PCO2 enrichment and elevated growth was reproducible in natural populations from New York waters. Alexandrium densities were significantly and consistently enhanced when natural populations were incubated at 150 Pa PCO2 compared to 39 Pa. During natural Alexandrium blooms in Northport Bay, PCO2 concentrations increased over the course of a bloom to more than 170 Pa and were highest in regions with the greatest Alexandrium abundances, suggesting Alexandrium may further exacerbate acidification and/or be especially adapted to these acidi-fied conditions. The co-occurrence of Alexandrium blooms and elevated PCO2 represents a previously unrecognized, compounding environmental threat to coastal ecosystems. The ability of elevated PCO2 to enhance the growth and toxicity of Alexandrium indicates that acidification promoted by eutrophication or climate change can intensify these, and perhaps other, harmful algal blooms.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2015-05-21.
description: Supplement to: Hattenrath-Lehmann, Theresa K; Smith, Juliette L; Wallace, Ryan B; Merlo, Lucas R; Koch, Florian; Mittelsdorf, Heidi; Goleski, Jennifer A; Anderson, Donald M; Gobler, Christopher J (2015): The effects of elevated CO2 on the growth and toxicity of field populations and cultures of the saxitoxin-producing dinoflagellate, Alexandrium fundyense. Limnology and Oceanography, 60(1), 198-214
DOI: 10.1594/pangaea.910345
title: In situ conditions along transects from the outer rim to the innermost part of a Fucus habitat in Kiel Fjord, May 2013

description: Two transects from the outer rim of a Fucus patch (0.3 to 0.7m deep) to a point 10m into the patch were used to assess the biogenic fluctuations of sea water chemistry between day (15:00) and night (5:00). Water samples were taken 0.2-0.3m above ground.
DOI: 10.1594/pangaea.902309
title: Seawater carbonate chemistry and primary and bacterial production in Antarctic coastal waters during austral summer

description: Polar waters may be highly impacted by ocean acidification (OA) due to increased solubility of CO2 at colder water temperatures. Three experiments examining the influence of OA on primary and bacterial production were conducted during austral summer at Davis Station, East Antarctica (68°35′ S, 77°58′ E). For each experiment, six minicosm tanks (650 L) were filled with 200 μm filtered coastal seawater containing natural communities of Antarctic marine microbes. Assemblages were incubated for 10 to 12 days at CO2 concentrations ranging from pre-industrial to post-2300. Primary and bacterial production rates were determined using NaH14CO3 and 14C-leucine, respectively. Net community production (NCP) was also determined using dissolved oxygen. In all experiments, maximum photosynthetic rates (Pmax, mg C mg/chl a/h) decreased with elevated CO2, clearly reducing rates of total gross primary production (mg C/L/h). Rates of cell-specific bacterial productivity (μg C/cell/h) also decreased under elevated CO2, yet total bacterial production (μg C/L/h) and cell abundances increased with CO2 over Days 0–4. Initial increases in bacterial production and abundance were associated with fewer heterotrophic nanoflagellates and therefore less grazing pressure. The main changes in primary and bacterial productivity generally occurred at CO2 concentrations &gt; 2 × present day (&gt; 780 ppm), with the same responses occurring regardless of seasonally changing environmental conditions and microbial assemblages. However, NCP varied both within and among experiments, largely due to changing nitrate + nitrite (NOx) availability. At NOx concentrations &lt; 1.5 μM photosynthesis to respiration ratios showed that populations switched from net autotrophy to heterotrophy and CO2 responses were suppressed. Overall, OA may reduce production in Antarctic coastal waters, thereby reducing food availability to higher trophic levels and reducing draw-down of atmospheric CO2, thus forming a positive feedback to climate change. NOX limitation may suppress this OA response but cause a similar decline.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2019-05-17.
description: Supplement to: Westwood, Karen; Thomson, Paul G; van den Enden, Rick; Maher, L E; Wright, S; Davidson, Andrew T (2018): Ocean acidification impacts primary and bacterial production in Antarctic coastal waters during austral summer. Journal of Experimental Marine Biology and Ecology, 498, 46-60
DOI: 10.1594/pangaea.953834
title: Seawater carbonate chemistry and reproduction of Paracyclopina nana

description: Plasticity enhances species fitness and survival under climate change. Ocean acidification poses a potential threat to copepods, a major zooplankton group that serves as a key link between the lower and higher trophic levels in the marine environment, yet the mechanisms underlying different adaptive responses remain poorly understood. Here we show that although elevated CO2 can exert negative effects on reproduction of Paracyclopina nana, multigenerational plasticity can enable recovery after three generations. By integrating the methylome and transcriptome with the draft genome and undertaking DNA methylation treatments, we demonstrate the vital role of epigenetic modifications in ocean acidification responses and identify regions associated with reproductive resilience. Our results demonstrate that DNA methylation might play an important role in enhancing species fitness of copepods and that failing to consider phenotypic plasticity could lead to overestimation of species' vulnerabilities.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-01-11.
DOI: 10.1594/pangaea.717469
title: Seawater carbonate chemistry and calcification during tropical reef studies at Moorea (French Polynesia), 1997

description: Community metabolism and air-sea carbon dioxide (CO2) fluxes were investigated in July 1992 on a fringing reef at Moorea (French Polynesia). The benthic community was dominated by macroalgae (85% substratum cover) and comprised of Phaeophyceae Padina tenuis (Bory), Turbinaria ornata (Turner) J. Agardh, and Hydroclathrus clathratus Bory (Howe); Chlorophyta Halimeda incrassata f. ovata J. Agardh (Howe); and Ventricaria ventricosa J. Agardh (Olsen et West), as well as several Rhodophyta (Actinotrichia fragilis Forskál (Børgesen) and several species of encrusting coralline algae). Algal biomass was 171 g dry weight/m**2. Community gross production (Pg), respiration (R), and net calcification (G) were measured in an open-top enclosure. Pg and R were respectively 248 and 240 mmol Co2/m**2/d, and there was a slight net dissolution of CaCO3 (0.8 mmol/m**2/d). This site was a sink for atmospheric CO2 (10 ± 4 mmol CO2/m**2/d), and the analysis of data from the literature suggests that this is a general feature of algal-dominated reefs. Measurement of air-sea CO2 fluxes in open water close to the enclosure demonstrated that changes in small-scale hydrodynamics can lead to misleading conclusions. Net CO2 evasion to the atmosphere was measured on the fringing reef due to changes in the current pattern that drove water from the barrier reef (a C02 source) to the study site.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
description: Supplement to: Gattuso, Jean-Pierre; Payri, Claude E; Pichon, Michel; Delesalle, Bruno; Frankignoulle, Michel (1997): Primary production, calcification, and air-sea CO2 fluxes of a macroalgal-dominated coral reef community (Moorea, French Polynesia). Journal of Phycology, 33(5), 729-738
DOI: 10.1594/pangaea.868905
title: Combined ocean acidification and low temperature stressors cause coral mortality

description: Oceans are predicted to become more acidic and experience more temperature variability-both hot and cold-as climate changes. Ocean acidification negatively impacts reef-building corals, especially when interacting with other stressors such as elevated temperature. However, the effects of combined acidification and low temperature stress have yet to be assessed. Here, we exposed nubbins of the scleractinian coral Montipora digitata to ecologically relevant acidic, cold, or combined stress for 2 weeks. Coral nubbins exhibited 100% survival in isolated acidic and cold treatments, but 30% mortality under combined conditions. These results provide further evidence that coupled stressors have an interactive effect on coral physiology, and reveal that corals in colder environments are also susceptible to the deleterious impacts of coupled ocean acidification and thermal stress.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-11-29.
description: Supplement to: Kavousi, Javid; Parkinson, John Everett; Nakamura, Takashi (2016): Combined ocean acidification and low temperature stressors cause coral mortality. Coral Reefs, 35(3), 903-907
DOI: 10.1594/pangaea.888184
title: Seawater carbonate chemistry and sperm-egg collisions, gamete fusion, and generation of Ca2+ oscillations of a broadcast spawning bivalve, Tegillarca granosa

description: Although the effect of ocean acidification on fertilization success of marine organisms is increasingly well documented, the underlying mechanisms are not completely understood. The fertilization success of broadcast spawning invertebrates depends on successful sperm-egg collisions, gamete fusion, and standard generation of Ca2+oscillations. Therefore, the realistic effects of future ocean pCO2 levels on these specific aspects of fertilization of Tegillarca granosa were investigated in the present study through sperm velocity trials, fertilization kinetics model analysis, and intracellular Ca2+assays, respectively. Results obtained indicated that ocean acidification significantly reduced the fertilization success of T. granosa, which could be accountable by (i) decreased sperm velocity hence reducing the probability for sperm-egg collisions; (ii) lowered probability of gamete fusion for each gamete collision event; and (iii) disrupted intracellular Ca2+ oscillations.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-04-09.
description: Supplement to: Shi, Wei; Han, Yu; Guo, Cheng; Zhao, Xinguo; Liu, Saixi; Su, Wenhao; Wang, Yichen; Zha, Shanjie; Chai, Xueliang; Liu, Guangxu (2017): Ocean acidification hampers sperm-egg collisions, gamete fusion, and generation of Ca 2+ oscillations of a broadcast spawning bivalve, Tegillarca granosa. Marine Environmental Research, 130, 106-112
DOI: 10.1594/pangaea.874845
title: Experiment on kinematics of swimming behavior of Atlantic herring larvae (Clupea harengus L.)

description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2017-04-12.
DOI: 10.1594/pangaea.834202
title: Ocean acidification alleviates low-temperature effects on growth and photosynthesis of the red alga Neosiphonia harveyi (Rhodophyta)

description: This study aimed to examine interactive effects between ocean acidification and temperature on the photosynthetic and growth performance of Neosiphonia harveyi. N. harveyi was cultivated at 10 and 17.5 °C at present (~380 µatm), expected future (~800 µatm), and high (~1500 µatm) pCO2. Chlorophyll a fluorescence, net photosynthesis, and growth were measured. The state of the carbon-concentrating mechanism (CCM) was examined by pH-drift experiments (with algae cultivated at 10 °C only) using ethoxyzolamide, an inhibitor of external and internal carbonic anhydrases (exCA and intCA, respectively). Furthermore, the inhibitory effect of acetazolamide (an inhibitor of exCA) and Tris (an inhibitor of the acidification of the diffusive boundary layer) on net photosynthesis was measured at both temperatures. Temperature affected photosynthesis (in terms of photosynthetic efficiency, light saturation point, and net photosynthesis) and growth at present pCO2, but these effects decreased with increasing pCO2. The relevance of the CCM decreased at 10 °C. A pCO2 effect on the CCM could only be shown if intCA and exCA were inhibited. The experiments demonstrate for the first time interactions between ocean acidification and temperature on the performance of a non-calcifying macroalga and show that the effects of low temperature on photosynthesis can be alleviated by increasing pCO2. The findings indicate that the carbon acquisition mediated by exCA and acidification of the diffusive boundary layer decrease at low temperatures but are not affected by the cultivation level of pCO2, whereas the activity of intCA is affected by pCO2. Ecologically, the findings suggest that ocean acidification might affect the biogeographical distribution of N. harveyi.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne et al, 2014) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2014-07-22.
description: Supplement to: Olischläger, Mark; Wiencke, Christian (2013): Ocean acidification alleviates low-temperature effects on growth and photosynthesis of the red alga Neosiphonia harveyi (Rhodophyta). Journal of Experimental Botany, 64(18), 5587-5597