cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.a3ahnp
title: Occurrence Download

description: A dataset containing 30236 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Limnochloa parvula, Scirpus comosus, Scirpus leptos, Scirpus nanus, Scirpus parvulus, Scirpus pollicaris, Scirpus pygmaeus, Trichophorum parvulum, Eleocharis quinqueflora, Baeothryon halleri, Baeothryon pauciflorum, Clavula baeothryon, Clavula boeotryon, Cyperus pauciflorus, Eleocharis atacamensis, Eleocharis baeothryon, Eleocharis baeothryon, Eleocharis czernjajevi, Eleocharis fernaldii, Eleocharis meridionalis, Eleocharis obscura, Eleocharis pauciflora, Eleocharis pauciflora fernaldii, Eleocharis pauciflora pauciflora, Eleocharis quinqueflora fernaldii, Eleocharis quinqueflora meridionalis, Eleocharis quinqueflora meridionalis, Eleocharis quinqueflora quinqueflora, Eleocharis vierhapperi, Heleocharis pauciflora, Heliocharis pauciflora, Isolepis andina, Limnochloa baeothryon, Limnochloa baeothryon minor, Limnochloa pauciflora, Scirpus atacamensis, Scirpus baeothryon, Scirpus baeothryon campestris, Scirpus baeothryon major, Scirpus baeothryon minor, Scirpus caespitosus, Scirpus campestris, Scirpus cespitosus, Scirpus graecus, Scirpus halleri, Scirpus pauciflorus, Scirpus pauciflorus minor, Scirpus pauciflorus campester, Scirpus pauciflorus campestris, Scirpus pauciflorus fernaldii)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 30236 records from 349 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047022-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s9qq8m
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus contorta",
 "Country is Slovakia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047025-250811113504898/datasets/export for details.
DOI: 10.22002/93kmw-qpb52
title: Pseudomonas aeruginosa

description: Raw data files of Pseudomonas aeruginosa
description: <strong>Tilt Series Date:</strong> 2018-12-21</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> PA14 flgI::MrT7 (Tn)</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 2°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -10.0 μm,  magnification: 26000x. </p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> These cells were obtained from Diana Newman lab (cells given by the lab manager Shannon Park) from the transposon library. This is number (4658) from the non-redundant list (FLgI mutant).</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-12-21-19/rawdata/</p>Pseudomonas_dflgI24.mrc,  Tilt Series (Pixel Size 0.53 nm), 1.5 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-12-21-19/rawdata/Pseudomonas_dflgI24.mrc"
        > <i class="download icon"></i> Download </a></p>

        Pseudomonas_dflgI24_full.rec,  Reconstruction (Pixel Size 2.12 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-12-21-19/3dimage_99846/Pseudomonas_dflgI24_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/9tyr8-84v23
title: Shewanella oneidensis

description: Raw data files of Shewanella oneidensis
description: <strong>Tilt Series Date:</strong> 2019-01-13</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -9.0 μm,  magnification: 26000x. </p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> This mutant was prepared in the lab of Jeffrey A Gralnick at the University of Minnesota. This mutant was ultimately published in the EMBOJ (Kaplan et al., The EMBOJ, 2019)</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2019-01-13-49/rawdata/</p>Shewanella_dfliF41.mrc,  Tilt Series (Pixel Size 0.53 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2019-01-13-49/rawdata/Shewanella_dfliF41.mrc"
        > <i class="download icon"></i> Download </a></p>

        Shewanella_dfliF41_full.rec,  Reconstruction (Pixel Size 2.12 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2019-01-13-49/3dimage_100734/Shewanella_dfliF41_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.x9vrs3
title: Occurrence Download

description: A dataset containing 4008 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus contorta",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4008 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047027-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/g49wx-h0v63
title: Ecoli+Elastin

description: Raw data files of Ecoli+Elastin
description: <strong>Tilt Series Date:</strong> 2018-10-15</p>
<strong>Data Taken By:</strong> Songye Chen</p>
<strong>Species / Specimen:</strong> Escherichia coli in vitro</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Seunghyun Sim from Tirrell Lab provided the sample</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2018-10-15-24/rawdata/</p>6N_tilt24.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2018-10-15-24/rawdata/6N_tilt24.mrc"
        > <i class="download icon"></i> Download </a></p>

        6N_tilt24_full.rec,  Reconstruction (Pixel Size 1.56 nm), 444.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2018-10-15-24/3dimage_97635/6N_tilt24_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/cfsc8-pcn28
title: P. gingivalis wild type

description: Raw data files of P. gingivalis wild type
description: <strong>Tilt Series Date:</strong> 2020-11-06</p>
<strong>Data Taken By:</strong> Georges Chreifi</p>
<strong>Species / Specimen:</strong> Porphyromonas gingivalis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 170.0 eV/Å²,  defocus: -6.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Eric Reynolds</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown and harvested from plates</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2020-11-06-341/rawdata/</p>PginWT9_340.mrc,  Tilt Series (Pixel Size 0.333 nm), 1.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2020-11-06-341/rawdata/PginWT9_340.mrc"
        > <i class="download icon"></i> Download </a></p>

        PginWT9_340_full.rec,  Reconstruction (Pixel Size 1.332 nm), 737.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2020-11-06-341/3dimage_115640/PginWT9_340_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/4w815-sqw49
title: caulobacter rs_deletion

description: Raw data files of caulobacter rs_deletion
description: <strong>Tilt Series Date:</strong> 2019-12-07</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-54.0°, 54.0°), step: 3.0°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: -7.0 μm,  magnification: 19500x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Debnath Ghosal collected and processed.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-12-07-157/rawdata/</p>Cc_TS90.mrc,  Tilt Series (Pixel Size 0.353 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-12-07-157/rawdata/Cc_TS90.mrc"
        > <i class="download icon"></i> Download </a></p>

        Cc_TS90.rec,  Reconstruction (Pixel Size 1.412 nm), 1.5 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-12-07-157/3dimage_112304/Cc_TS90.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.suphy9
title: Occurrence Download

description: A dataset containing 623 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mergus octosetaceus"
 ]
}

 The dataset includes 623 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047028-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/jhbzj-xar64
title: nanowires+type4pili+22500mag+-8d

description: These cells were imaged to detect nanowires (grown using serum bottles) but we did not find them. We found type 4 pili instead.
description: <strong>Tilt Series Date:</strong> 2015-03-06</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 55.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Moh at USC</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-03-06-4/rawdata/</p>atlas1_22500mag0005.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-03-06-4/rawdata/atlas1_22500mag0005.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas1_22500mag0005_full.rec,  Reconstruction (Pixel Size 1.92 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-03-06-4/3dimage_52737/atlas1_22500mag0005_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.u96n4g
title: Occurrence Download

description: A dataset containing 501529 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Sceloporus smaragdinus, Sceloporus taeniocnemis, Sceloporus internasalis, Sceloporus malachiticus, Sceloporus cryptus, Sceloporus subpictus, Sceloporus lundelli, Sceloporus adleri, Sceloporus stejnegeri, Sceloporus druckercolini, Sceloporus formosus, Sceloporus albiventris, Sceloporus edwardtaylori, Sceloporus horridus, Sceloporus spinosus, Sceloporus cautus, Sceloporus cowlesi, Sceloporus edbelli, Sceloporus consobrinus, Sceloporus tristichus, Sceloporus woodi, Sceloporus undulatus, Sceloporus occidentalis, Sceloporus virgatus, Sceloporus olivaceus, Sceloporus aeneus, Sceloporus bicanthalis, Sceloporus aurantius, Sceloporus scalaris, Sceloporus slevini, Sceloporus chaneyi, Sceloporus goldmani, Sceloporus samcolemani, Sceloporus anahuacus, Sceloporus palaciosi, Sceloporus heterolepis, Sceloporus shannonorum, Sceloporus grammicus, Sceloporus asper, Sceloporus aureolus, Sceloporus macdougalli, Sceloporus cyanogenys, Sceloporus cyanostictus, Sceloporus minor, Sceloporus serrifer, Sceloporus mucronatus, Sceloporus poinsettii, Sceloporus sugillatus, Sceloporus dugesii, Sceloporus bulleri, Sceloporus torquatus, Sceloporus insignis, Sceloporus jarrovii, Sceloporus megalepidurus, Sceloporus clarkii, Sceloporus melanorhinus, Sceloporus bimaculosus, Sceloporus magister, Sceloporus uniformis, Sceloporus lineatulus, Sceloporus zosteromus, Sceloporus hunsakeri, Sceloporus orcutti, Sceloporus licki, Sceloporus arenicolus, Sceloporus graciosus, Sceloporus gadoviae, Sceloporus maculosus, Sceloporus jalapae, Sceloporus ochoterenae, Sceloporus nelsoni, Sceloporus pyrocephalus, Sceloporus merriami, Sceloporus angustus, Sceloporus grandaevus, Sceloporus utiformis, Sceloporus carinatus, Sceloporus siniferus, Sceloporus squamosus, Sceloporus chrysostictus, Sceloporus cozumelae, Sceloporus smithi, Sceloporus teapensis, Sceloporus variabilis, Sceloporus couchii, Sceloporus parvus)"
 ]
}

 The dataset includes 501529 records from 239 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046998-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/ep97a-rre85
title: 91+92 host and prey cells

description: Raw data files of 91+92 host and prey cells
description: <strong>Tilt Series Date:</strong> 2015-06-05</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Chris Hayes and David Low</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-06-05-39/rawdata/</p>PS95-tomo0027.mrc,  Tilt Series (Pixel Size 0.331 nm), 3.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-06-05-39/rawdata/PS95-tomo0027.mrc"
        > <i class="download icon"></i> Download </a></p>

        PS95-tomo0027_full.rec,  Reconstruction (Pixel Size 1.324 nm), 430.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-06-05-39/3dimage_58647/PS95-tomo0027_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.17632/5j6x8s252h
title: Raw blot images for Yu et al.

description: Uncropped western blots for figures appearing in Yu et al. Full details of methods and interpretation are provided in the associated manuscript.
DOI: 10.22002/6ke7y-2br93
title: Caulobacter del-tipN

description: delta-tipN (strain 5993)Grid box YWC266
description: <strong>Tilt Series Date:</strong> 2017-12-01</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain from Patrick Viollier</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-12-01-2/rawdata/</p>20171201_YWC266_10002.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-12-01-2/rawdata/20171201_YWC266_10002.mrc"
        > <i class="download icon"></i> Download </a></p>

        20171201_YWC266_10002_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-12-01-2/3dimage_90876/20171201_YWC266_10002_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.17632/5j6x8s252h.1
title: Raw blot images for Yu et al.

description: Uncropped western blots for figures appearing in Yu et al. Full details of methods and interpretation are provided in the associated manuscript.
DOI: 10.22002/e0cbt-q4250
title: Methanobacterium formicicum

description: Raw data files of Methanobacterium formicicum
description: <strong>Tilt Series Date:</strong> 2015-05-07</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Methanobacterium formicicum</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Eric Matson</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-05-07-16/rawdata/</p>Methano_eric0012.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-05-07-16/rawdata/Methano_eric0012.mrc"
        > <i class="download icon"></i> Download </a></p>

        Methano_eric0012_full.rec,  Reconstruction (Pixel Size 2.4 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-05-07-16/3dimage_56099/Methano_eric0012_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/61mat-8pb40
title: Pseudomonas full length aer2

description: Pseudomonas full length aer2 on plasmid, no induction
description: <strong>Tilt Series Date:</strong> 2015-07-28</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
<strong>Collaborators and Roles:</strong> Kylie Watts</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-07-28-4/rawdata/</p>Pseudofullaer2plasmidJuly0003.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-07-28-4/rawdata/Pseudofullaer2plasmidJuly0003.mrc"
        > <i class="download icon"></i> Download </a></p>

        Pseudofullaer2plasmidJuly0003.rec,  Reconstruction (Pixel Size 1.28 nm), 1.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-07-28-4/3dimage_59740/Pseudofullaer2plasmidJuly0003.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.6084/m9.figshare.29986939.v1
title: The genome assembly and annotation files of Flemingia macrophylla

description: In this study, we present an improved chromosome-level genome assembly of Flemingia macrophylla generated using PacBio HiFi long-read sequencing and Hi-C scaffolding.
DOI: 10.22002/ekz4x-dkk58
title: NR1769/R1-16 conjugation

description: Grid box YWC234
description: <strong>Tilt Series Date:</strong> 2016-12-08</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain and sample prepared by Carrie Shaffer</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-12-08-76/3dimage_79995/</p>20161208_YWC234_10076_part121_6.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
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        20161208_YWC234_10076.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
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