cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.11579401
title: Trento 1936 - Building 1181

description: Coordinates: N/A Length: 11.8 mWidth: 10.32 mHeight: 12.95 mPoints: 12 Vertices: 60 Primitives: 20 Main Files:
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DOI: 10.5281/zenodo.11579402
title: Trento 1936 - Building 1181

description: Coordinates: N/A Length: 11.8 mWidth: 10.32 mHeight: 12.95 mPoints: 12 Vertices: 60 Primitives: 20
DOI: 10.5281/zenodo.12540908
title: Trento 1936 - Building 1167

description: Coordinates: N/A Length: 14.8 mWidth: 11.57 mHeight: 13.92 mPoints: 8 Vertices: 36 Primitives: 12 Main Files:
Filename.glb.objbuilding_1167.objLinkbuilding_1167.glbLinkThumbnails:
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DOI: 10.5281/zenodo.12550995
title: Trento 1936 - Building 1181

description: Coordinates: N/A Length: 11.8 mWidth: 10.32 mHeight: 12.95 mPoints: 12 Vertices: 60 Primitives: 20 Main Files:
Filename.glb.objbuilding_1181.glbLinkbuilding_1181.objLinkThumbnails:
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DOI: 10.5281/zenodo.12692585
title: Trento 1936 - Building 1181

description: Coordinates: N/A Length: 11.8 mWidth: 10.32 mHeight: 12.95 mPoints: 12 Vertices: 60 Primitives: 20 Main Files:
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DOI: 10.5281/zenodo.12692596
title: Trento 1936 - Building 1167

description: Coordinates: N/A Length: 14.8 mWidth: 11.57 mHeight: 13.92 mPoints: 8 Vertices: 36 Primitives: 12 Main Files:
Filename.glb.xml.objbuilding_1167.objLinkbuilding_1167.glbLink11572981_metsmods.xmlLink11572981_edm.xmlLinkThumbnails:
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DOI: 10.5281/zenodo.11251828
title: Sion 1760 - Building 314 (LoD-1)

description: Coordinates: N/A Length: 10.84 mWidth: 12.6 mHeight: 9.92 mVertices: 24 Primitives: 12  The Length, Width, Height, Vertices and Primitives listed above have been derived directly from the OBJ file.
DOI: 10.5281/zenodo.11564757
title: Trento 1851 - Building 460

description: Coordinates: N/A Length: 7.46 mWidth: 12.8 mHeight: 5.39 mPoints: 8 Vertices: 36 Primitives: 12
DOI: 10.5281/zenodo.11566985
title: Trento 1886 - Building 510

description: Coordinates: N/A Length: 25.59 mWidth: 12.66 mHeight: 17.78 mPoints: 14 Vertices: 66 Primitives: 22 Main Files:
Filename.glb.xml.objbuilding_510.objLinkbuilding_510.glbLink11566985_edm.xmlLink11566985_metsmods.xmlLinkThumbnails:
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DOI: 10.5281/zenodo.11566986
title: Trento 1886 - Building 510

description: Coordinates: N/A Length: 25.59 mWidth: 12.66 mHeight: 17.78 mPoints: 14 Vertices: 66 Primitives: 22
DOI: 10.5281/zenodo.12531952
title: Trento 1851 - Building 460

description: Coordinates: N/A Length: 7.46 mWidth: 12.8 mHeight: 5.39 mPoints: 8 Vertices: 36 Primitives: 12 Main Files:
Filename.glb.objbuilding_460.objLinkbuilding_460.glbLinkThumbnails:
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DOI: 10.5281/zenodo.12535208
title: Trento 1886 - Building 510

description: Coordinates: N/A Length: 25.59 mWidth: 12.66 mHeight: 17.78 mPoints: 14 Vertices: 66 Primitives: 22 Main Files:
Filename.glb.objbuilding_510.objLinkbuilding_510.glbLinkThumbnails:
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DOI: 10.5281/zenodo.12692587
title: Trento 1886 - Building 510

description: Coordinates: N/A Length: 25.59 mWidth: 12.66 mHeight: 17.78 mPoints: 14 Vertices: 66 Primitives: 22 Main Files:
Filename.glb.xml.objbuilding_510.objLinkbuilding_510.glbLink11566985_edm.xmlLink11566985_metsmods.xmlLinkThumbnails:
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DOI: 10.5281/zenodo.11492350
title: Sion 1760 - Building 314 (LoD-1)

description: Coordinates: N/A Length: 10.84 mWidth: 12.6 mHeight: 9.92 mVertices: 24 Primitives: 12  The Length, Width, Height, Vertices and Primitives listed above have been derived directly from the OBJ file.Main Files:
Filename.mtl.glb.obj0___LoD1__id-314_002.glbLink0___LoD1__id-314_002.mtlLink0___LoD1__id-314_002.objLinkThumbnails:
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DOI: 10.5281/zenodo.11564756
title: Trento 1851 - Building 460

description: Coordinates: N/A Length: 7.46 mWidth: 12.8 mHeight: 5.39 mPoints: 8 Vertices: 36 Primitives: 12 Main Files:
Filename.glb.xml.objbuilding_460.objLinkbuilding_460.glbLink11564756_metsmods.xmlLink11564756_edm.xmlLinkThumbnails:
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DOI: 10.5281/zenodo.12692593
title: Trento 1851 - Building 460

description: Coordinates: N/A Length: 7.46 mWidth: 12.8 mHeight: 5.39 mPoints: 8 Vertices: 36 Primitives: 12 Main Files:
Filename.glb.xml.objbuilding_460.objLinkbuilding_460.glbLink11564756_metsmods.xmlLink11564756_edm.xmlLinkThumbnails:
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DOI: 10.5281/zenodo.11251827
title: Sion 1760 - Building 314 (LoD-1)

description: Coordinates: N/A Length: 10.84 mWidth: 12.6 mHeight: 9.92 mVertices: 24 Primitives: 12  The Length, Width, Height, Vertices and Primitives listed above have been derived directly from the OBJ file.Main Files:
Filename.mtl.glb.xml.obj0___LoD1__id-314_002.glbLink0___LoD1__id-314_002.mtlLink0___LoD1__id-314_002.objLink11251827_edm.xmlLink11251827_metsmods.xmlLinkThumbnails:
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DOI: 10.5281/zenodo.12692599
title: Sion 1760 - Building 314 (LoD-1)

description: Coordinates: N/A Length: 10.84 mWidth: 12.6 mHeight: 9.92 mVertices: 24 Primitives: 12  The Length, Width, Height, Vertices and Primitives listed above have been derived directly from the OBJ file.Main Files:
Filename.mtl.glb.xml.obj0___LoD1__id-314_002.glbLink0___LoD1__id-314_002.mtlLink0___LoD1__id-314_002.objLink11251827_edm.xmlLink11251827_metsmods.xmlLinkThumbnails:
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DOI: 10.5281/zenodo.11250297
title: Sion 1640 - Building 119 (LoD-1)

description: Coordinates: N/A Length: 7.99 mWidth: 9.34 mHeight: 8.35 mVertices: 24 Primitives: 12  The Length, Width, Height, Vertices and Primitives listed above have been derived directly from the OBJ file.
DOI: 10.5281/zenodo.11250296
title: Sion 1640 - Building 119 (LoD-1)

description: Coordinates: N/A Length: 7.99 mWidth: 9.34 mHeight: 8.35 mVertices: 24 Primitives: 12  The Length, Width, Height, Vertices and Primitives listed above have been derived directly from the OBJ file.Main Files:
Filename.mtl.glb.xml.obj0___LoD1__id-119.glbLink0___LoD1__id-119.mtlLink0___LoD1__id-119.objLink11250296_edm.xmlLink11250296_metsmods.xmlLinkThumbnails:
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DOI: 10.5281/zenodo.11488902
title: Sion 1640 - Building 119 (LoD-1)

description: Coordinates: N/A Length: 7.99 mWidth: 9.34 mHeight: 8.35 mVertices: 24 Primitives: 12  The Length, Width, Height, Vertices and Primitives listed above have been derived directly from the OBJ file.Main Files:
Filename.mtl.obj.glb0___LoD1__id-119.objLink0___LoD1__id-119.mtlLink0___LoD1__id-119.glbLinkThumbnails:
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DOI: 10.5281/zenodo.12692595
title: Sion 1640 - Building 119 (LoD-1)

description: Coordinates: N/A Length: 7.99 mWidth: 9.34 mHeight: 8.35 mVertices: 24 Primitives: 12  The Length, Width, Height, Vertices and Primitives listed above have been derived directly from the OBJ file.Main Files:
Filename.mtl.glb.xml.obj0___LoD1__id-119.glbLink0___LoD1__id-119.mtlLink0___LoD1__id-119.objLink11250296_edm.xmlLink11250296_metsmods.xmlLinkThumbnails:
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DOI: 10.5281/zenodo.11248979
title: Sion 1840 - Building 207 (LoD-1)

description: Coordinates: N/A Length: 19.9 mWidth: 17.34 mHeight: 5.62 mVertices: 30 Primitives: 16  The Length, Width, Height, Vertices and Primitives listed above have been derived directly from the OBJ file.
DOI: 10.5281/zenodo.11485471
title: Sion 1840 - Building 207 (LoD-1)

description: Coordinates: N/A Length: 19.9 mWidth: 17.34 mHeight: 5.62 mVertices: 30 Primitives: 16  The Length, Width, Height, Vertices and Primitives listed above have been derived directly from the OBJ file.Main Files:
Filename.mtl.obj.glb0___LoD1__id-207_001.mtlLink0___LoD1__id-207_001.objLink0___LoD1__id-207_001.glbLinkThumbnails:
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DOI: 10.5281/zenodo.11248978
title: Sion 1840 - Building 207 (LoD-1)

description: Coordinates: N/A Length: 19.9 mWidth: 17.34 mHeight: 5.62 mVertices: 30 Primitives: 16  The Length, Width, Height, Vertices and Primitives listed above have been derived directly from the OBJ file.Main Files:
Filename.mtl.glb.xml.obj0___LoD1__id-207_001.glbLink0___LoD1__id-207_001.objLink0___LoD1__id-207_001.mtlLink11248978_edm.xmlLink11248978_metsmods.xmlLinkThumbnails:
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DOI: 10.5281/zenodo.11566262
title: Trento 1886 - Building 540

description: Coordinates: N/A Length: 16.69 mWidth: 11.02 mHeight: 28.11 mPoints: 20 Vertices: 102 Primitives: 34 Main Files:
Filename.glb.xml.objbuilding_540.objLinkbuilding_540.glbLink11566262_metsmods.xmlLink11566262_edm.xmlLinkThumbnails:
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DOI: 10.5281/zenodo.11566263
title: Trento 1886 - Building 540

description: Coordinates: N/A Length: 16.69 mWidth: 11.02 mHeight: 28.11 mPoints: 20 Vertices: 102 Primitives: 34
DOI: 10.5281/zenodo.12534336
title: Trento 1886 - Building 540

description: Coordinates: N/A Length: 16.69 mWidth: 11.02 mHeight: 28.11 mPoints: 20 Vertices: 102 Primitives: 34 Main Files:
Filename.glb.objbuilding_540.glbLinkbuilding_540.objLinkThumbnails:
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DOI: 10.5281/zenodo.12692590
title: Sion 1840 - Building 207 (LoD-1)

description: Coordinates: N/A Length: 19.9 mWidth: 17.34 mHeight: 5.62 mVertices: 30 Primitives: 16  The Length, Width, Height, Vertices and Primitives listed above have been derived directly from the OBJ file.Main Files:
Filename.mtl.glb.xml.obj0___LoD1__id-207_001.glbLink0___LoD1__id-207_001.objLink0___LoD1__id-207_001.mtlLink11248978_edm.xmlLink11248978_metsmods.xmlLinkThumbnails:
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DOI: 10.5281/zenodo.12692598
title: Trento 1886 - Building 540

description: Coordinates: N/A Length: 16.69 mWidth: 11.02 mHeight: 28.11 mPoints: 20 Vertices: 102 Primitives: 34 Main Files:
Filename.glb.xml.objbuilding_540.objLinkbuilding_540.glbLink11566262_metsmods.xmlLink11566262_edm.xmlLinkThumbnails:
Perspective1000x1000512x512256x256128x128Perspective 1LinkLinkLinkLinkPerspective 2LinkLinkLinkLinkPerspective 3LinkLinkLinkLinkPerspective 4LinkLinkLinkLinkPerspective TopLinkLinkLinkLinkChangelog:   - v0.0.2: Thumbnails added, Description updated with Link Tables.  - v0.0.3: Added XMLs for Europeana Data Model (EDM) and MetsMods.
DOI: 10.5281/zenodo.11573733
title: Trento 1936 - Building 1000

description: Coordinates: N/A Length: 11.77 mWidth: 10.41 mHeight: 6.07 mPoints: 14 Vertices: 72 Primitives: 24 Main Files:
Filename.glb.xml.objbuilding_1000.objLinkbuilding_1000.glbLink11573733_metsmods.xmlLink11573733_edm.xmlLinkThumbnails:
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DOI: 10.5281/zenodo.11573734
title: Trento 1936 - Building 1000

description: Coordinates: N/A Length: 11.77 mWidth: 10.41 mHeight: 6.07 mPoints: 14 Vertices: 72 Primitives: 24
DOI: 10.5281/zenodo.12541799
title: Trento 1936 - Building 1000

description: Coordinates: N/A Length: 11.77 mWidth: 10.41 mHeight: 6.07 mPoints: 14 Vertices: 72 Primitives: 24 Main Files:
Filename.glb.objbuilding_1000.objLinkbuilding_1000.glbLinkThumbnails:
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DOI: 10.5281/zenodo.12692589
title: Trento 1936 - Building 1000

description: Coordinates: N/A Length: 11.77 mWidth: 10.41 mHeight: 6.07 mPoints: 14 Vertices: 72 Primitives: 24 Main Files:
Filename.glb.xml.objbuilding_1000.objLinkbuilding_1000.glbLink11573733_metsmods.xmlLink11573733_edm.xmlLinkThumbnails:
Perspective1000x1000512x512256x256128x128Perspective 1LinkLinkLinkLinkPerspective 2LinkLinkLinkLinkPerspective 3LinkLinkLinkLinkPerspective 4LinkLinkLinkLinkPerspective TopLinkLinkLinkLinkChangelog:   - v0.0.2: Thumbnails added, Description updated with Link Tables.  - v0.0.3: Added XMLs for Europeana Data Model (EDM) and MetsMods.
DOI: 10.23729/83956325-3cbb-41cf-b3a4-70e1dd183b6e
title: Data for "Integrating Double-labelling HCR-FISH Into a Multidisciplinary Pipeline for Biofouling Assessment on Austenitic Stainless Steel in Brackish Seawater Circuit"

description: Microbially-induced corrosion (MIC) caused by native microbial communities in seawater could destroy the passive layer locally on stainless steel, causing pitting corrosion. Several previous studies have investigated the biocorrosion behavior on the material, especially the influence of sulfate-reducing bacteria (SRB), by using electrochemical and surface characterization methods with a biological quantitative polymerase chain reaction. However, there is not yet a technique that could visualize the microbial distribution on the metal surface by their communities. This study aimed to adapt and modify a protocol of applied DNA hybridization chain reaction-fluorescence in situ hybridization (HCR-FISH) to visualize targeted microbial cells on the austenitic stainless-steel surface, providing a unique distribution map of bacteria, archaea, and SRB on the metallic surface. 
The modified HCR-FISH method was first tested for pure microbial cultures in the laboratory and environmental samples. The method was then applied in a lab-scale biocorrosion study of stainless steel EN 1.4404 with surface finish 2R and 2B in a circuit system of natural brackish seawater. As a result, the method was suitable to directly apply on stainless-steel surfaces to visualize the biofilm distribution which was supportive for a MIC study.
DOI: 10.15468/dl.vjhsnd
title: Occurrence Download

description: A dataset containing 149959 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Occurrence evidence",
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "Year is 2023"
 ]
}

 The dataset includes 149959 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017238-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.4300970
title: High-quality large curated dataset of protein sequences (1.83 million) and their corresponding Position Specific Scoring Matrices

description: As part of his master thesis at the Rostlab, which is located at the Technical University of Munich (TUM), Mr. Issar Arab developed the first language model that encodes evolutionary information of proteins explicitly. The pre-training involved the creation of a novel high-quality dataset of protein sequences (around 1.83 million proteins, or ~0.8 Billion amino acids) with their corresponding Position Specific Scoring Matrices (PSSMs).  Those matrices reflect the relative frequency of each amino acid at each position in a protein and is derived from evolutionarily related proteins.

Mr. Arab makes this work publicly available to help other researchers speed up their work to leverage AI to learn the representation of protein evolutionary information more explicitly. The set of sequences was derived by extracting all PSSMs from the PredictProtein (PP) cache, which were also part o the UniProt Reference Cluster with 50% sequence identity (uniref50 2019_12). The overlap between PP and uniref50 was further filtered to only include high-quality samples, e.g. only multiple sequence alignments with a certain number of aligned sequences were considered. The processing led to a training set of 1.83 Million sequences, a validation set of 879 instances, and a test set of 879 entries. The training data of proteins is reduced to 40% sequence identity, with respect to the validation/test sets, and contains sequences ranging between 18 and 9858 residues in length.

Refer to the Jupyter notebook for a detailed description of the files' structure and a Python code snippet to correctly manipulate this data.

To access the full original work, please visit the following link:  Manuscript Note: The dataset was recently used to fine tune a protein sequence language model (PEvoLM). The work was presented at the CIBCB'23 conference. If you use PEvoLM or this dataset in your work, please cite the following publication:

- Issar Arab, PEvoLM: Protein Sequence Evolutionary Information Language Model, IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), Eindhoven, Netherlands, (2023), pp. 1-8, doi:10.1109/CIBCB56990.2023.10264890