cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9600017
title: Additional file 1: of Soluble fibrinogen-like protein 2 promotes the growth of hepatocellular carcinoma via attenuating dendritic cell-mediated cytotoxic T cell activity

description: Contains all the supplementary figures and their legends. The titles of the legends are listed below.Â Figure S1. Fgl2 knockout can diminish significantly sFgl2 level in the hepatoma environment. Figure S2. Fgl2 knockout does not influence the number of MDSCs or M2 macrophages in the hepatoma microenvironment in BALB/c mice. Figure S3. Fgl2 knockout activates CD8+ T cells and DC maturation in the tumor microenvironment of s.c. transplanted hepatomas in C57BL/6 mice. Figure S4. Anti-FGL2 treatment activates CD8+ T cells and DC maturation in the tumor microenvironment of s.c. transplanted hepatomas in BALB/c mice. Figure S5. Anti-FGL2 treatment activates CD8+ T cells and DC maturation in the tumor microenvironment of s.c. transplanted hepatomas in C57BL/6 mice. Figure S6. Anti-FGL2 treatment promotes DC-mediated proliferation of T cells in s.c. transplanted hepatomas in BALB/c mice. Figure S7. Akt phosphorylation in T cells is unaltered by sFgl2. (ZIP 2120 kb)
DOI: 10.6084/m9.figshare.9600017.v1
title: Additional file 1: of Soluble fibrinogen-like protein 2 promotes the growth of hepatocellular carcinoma via attenuating dendritic cell-mediated cytotoxic T cell activity

description: Contains all the supplementary figures and their legends. The titles of the legends are listed below.Â Figure S1. Fgl2 knockout can diminish significantly sFgl2 level in the hepatoma environment. Figure S2. Fgl2 knockout does not influence the number of MDSCs or M2 macrophages in the hepatoma microenvironment in BALB/c mice. Figure S3. Fgl2 knockout activates CD8+ T cells and DC maturation in the tumor microenvironment of s.c. transplanted hepatomas in C57BL/6 mice. Figure S4. Anti-FGL2 treatment activates CD8+ T cells and DC maturation in the tumor microenvironment of s.c. transplanted hepatomas in BALB/c mice. Figure S5. Anti-FGL2 treatment activates CD8+ T cells and DC maturation in the tumor microenvironment of s.c. transplanted hepatomas in C57BL/6 mice. Figure S6. Anti-FGL2 treatment promotes DC-mediated proliferation of T cells in s.c. transplanted hepatomas in BALB/c mice. Figure S7. Akt phosphorylation in T cells is unaltered by sFgl2. (ZIP 2120 kb)
DOI: 10.6084/m9.figshare.9600023
title: Additional file 2: of Screening for genes that accelerate the epigenetic aging clock in humans reveals a role for the H3K36 methyltransferase NSD1

description: Information for the samples with developmental disorders (cases) that were included in the main screen (Nâ =â 367). (TSV 216 kb)
DOI: 10.6084/m9.figshare.9600023.v1
title: Additional file 2: of Screening for genes that accelerate the epigenetic aging clock in humans reveals a role for the H3K36 methyltransferase NSD1

description: Information for the samples with developmental disorders (cases) that were included in the main screen (Nâ =â 367). (TSV 216 kb)
DOI: 10.6084/m9.figshare.9600026
title: Additional file 3: of Screening for genes that accelerate the epigenetic aging clock in humans reveals a role for the H3K36 methyltransferase NSD1

description: Information for the healthy control samples that were included in the main screen (Nâ =â 1128). (TSV 633 kb)
DOI: 10.6084/m9.figshare.9600026.v1
title: Additional file 3: of Screening for genes that accelerate the epigenetic aging clock in humans reveals a role for the H3K36 methyltransferase NSD1

description: Information for the healthy control samples that were included in the main screen (Nâ =â 1128). (TSV 633 kb)
DOI: 10.6084/m9.figshare.9600035
title: Additional file 4: of Screening for genes that accelerate the epigenetic aging clock in humans reveals a role for the H3K36 methyltransferase NSD1

description: Information about the different blood cell type deconvolution strategies that were benchmarked against the gold standard dataset (GSE77797). (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9600035.v1
title: Additional file 4: of Screening for genes that accelerate the epigenetic aging clock in humans reveals a role for the H3K36 methyltransferase NSD1

description: Information about the different blood cell type deconvolution strategies that were benchmarked against the gold standard dataset (GSE77797). (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9600041
title: Additional file 5: of Screening for genes that accelerate the epigenetic aging clock in humans reveals a role for the H3K36 methyltransferase NSD1

description: Information (including the source) about the continuous (epi) genomic features (ChIP-seq and RNA-seq data) that were included in our analysis to annotate the different sets of CpG sites. (CSV 1 kb)
DOI: 10.6084/m9.figshare.9600041.v1
title: Additional file 5: of Screening for genes that accelerate the epigenetic aging clock in humans reveals a role for the H3K36 methyltransferase NSD1

description: Information (including the source) about the continuous (epi) genomic features (ChIP-seq and RNA-seq data) that were included in our analysis to annotate the different sets of CpG sites. (CSV 1 kb)
DOI: 10.6084/m9.figshare.9600056
title: Additional file 2: of Taxonomic integrative and phylogenetic identification of the first recorded Triatoma rubrofasciata in Zhangzhou, Fujian Province and Maoming, Guangdong Province, China

description: Table S1. Genetic distance table for 16S rRNA sequences used in Fig. 4. Standard error estimates were shown above the diagonal. Analyses were conducted using the Kimura 2-Parameter model. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.9600056.v1
title: Additional file 2: of Taxonomic integrative and phylogenetic identification of the first recorded Triatoma rubrofasciata in Zhangzhou, Fujian Province and Maoming, Guangdong Province, China

description: Table S1. Genetic distance table for 16S rRNA sequences used in Fig. 4. Standard error estimates were shown above the diagonal. Analyses were conducted using the Kimura 2-Parameter model. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.9600062
title: Additional file 3: of Taxonomic integrative and phylogenetic identification of the first recorded Triatoma rubrofasciata in Zhangzhou, Fujian Province and Maoming, Guangdong Province, China

description: Table S2. Genetic distance table for 28S rRNA sequences used in Fig. 5. Standard error estimates were shown above the diagonal. Analyses were conducted using the Kimura 2-Parameter model. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.9600062.v1
title: Additional file 3: of Taxonomic integrative and phylogenetic identification of the first recorded Triatoma rubrofasciata in Zhangzhou, Fujian Province and Maoming, Guangdong Province, China

description: Table S2. Genetic distance table for 28S rRNA sequences used in Fig. 5. Standard error estimates were shown above the diagonal. Analyses were conducted using the Kimura 2-Parameter model. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.9600065
title: Additional file 4: of Taxonomic integrative and phylogenetic identification of the first recorded Triatoma rubrofasciata in Zhangzhou, Fujian Province and Maoming, Guangdong Province, China

description: Table S3. Genetic distance table for COI sequences used in Fig. 6. Standard error estimates were shown above the diagonal. Analyses were conducted using the Kimura 2-Parameter model. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9600065.v1
title: Additional file 4: of Taxonomic integrative and phylogenetic identification of the first recorded Triatoma rubrofasciata in Zhangzhou, Fujian Province and Maoming, Guangdong Province, China

description: Table S3. Genetic distance table for COI sequences used in Fig. 6. Standard error estimates were shown above the diagonal. Analyses were conducted using the Kimura 2-Parameter model. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9600074
title: MOESM2 of Enhanced acid-stress tolerance in Lactococcus lactis NZ9000 by overexpression of ABC transporters

description: Additional file 2. Details of all differentially expressed genes.
DOI: 10.6084/m9.figshare.9600074.v1
title: MOESM2 of Enhanced acid-stress tolerance in Lactococcus lactis NZ9000 by overexpression of ABC transporters

description: Additional file 2. Details of all differentially expressed genes.
DOI: 10.6084/m9.figshare.7502945.v1
title: Additional file 7: of High-density SNP linkage map construction and QTL mapping for flavonoid-related traits in a tea plant (Camellia sinensis) using 2b-RAD sequencing

description: Table S8. The position information of SNP markers in the linkage group. (XLSX 170 kb)
DOI: 10.6084/m9.figshare.14843013
title: Dataset for 10-mega pixel snapshot compressive imaging with a hybrid coded aperture

description: This dataset is for our paper "10-mega pixel snapshot compressive imaging with a hybrid coded aperture".The data was captured by our HCA-SCI system, and can be used to reproduce the results of Fig. 6. in our paper.
DOI: 10.6084/m9.figshare.21130071
title: Additional file 1 of Comprehensive genomic characterization of cotton cationic amino acid transporter genes reveals that GhCAT10D regulates salt tolerance

description: Additional file 1: Table S1. Information of the CAT genes in G. arboreum. Table S2. Information of the CAT genes in G. raimondii. Table S3. Information of the CAT genes in G. barbadense. Table S4. Analysis of Ka/Ks ratios of CAT genes in four cotton species. Table S5. Primers sequences used in qRT-PCR. Table S6. Primers sequences used in virus-induced gene silencing experiment.
DOI: 10.6084/m9.figshare.21130071.v1
title: Additional file 1 of Comprehensive genomic characterization of cotton cationic amino acid transporter genes reveals that GhCAT10D regulates salt tolerance

description: Additional file 1: Table S1. Information of the CAT genes in G. arboreum. Table S2. Information of the CAT genes in G. raimondii. Table S3. Information of the CAT genes in G. barbadense. Table S4. Analysis of Ka/Ks ratios of CAT genes in four cotton species. Table S5. Primers sequences used in qRT-PCR. Table S6. Primers sequences used in virus-induced gene silencing experiment.
DOI: 10.6084/m9.figshare.13265753
title: Additional file 6 of Influence of microbiota and metabolites on the quality of tobacco during fermentation

description: Additional file 6: Supplementary Table S1. The detail information of annotated metabolites. (XLS 393 kb)
DOI: 10.6084/m9.figshare.9600302
title: Additional file 2: of GhYGL1d, a pentatricopeptide repeat protein, is required for chloroplast development in cotton

description: Table S3. RNA-seq dataset of CLCrVA and GhYGL1d-RNAi plants. (XLSX 17526 kb)
DOI: 10.6084/m9.figshare.9600302.v1
title: Additional file 2: of GhYGL1d, a pentatricopeptide repeat protein, is required for chloroplast development in cotton

description: Table S3. RNA-seq dataset of CLCrVA and GhYGL1d-RNAi plants. (XLSX 17526 kb)
DOI: 10.6084/m9.figshare.16940341
title: Knockdown of circular RNA septin 9 inhibits the malignant progression of breast cancer by reducing the expression of solute carrier family 1 member 5 in a microRNA-149-5p-dependent manner

description: Breast cancer (BC) is the most frequently diagnosed cancer in women. Increasing evidence suggests that circular RNA (circRNA) exerts critical functions in BC progression. However, the roles of circRNA septin 9 (circSEPT9) in BC development and the underneath mechanism remain largely unclear so far. In this work, the RNA levels of circSEPT9, microRNA-149-5p (miR-149-5p) and solute carrier family 1 member 5 (SLC1A5) were detected by quantitative real-time polymerase chain reaction. Western blot was performed to check protein expression. Glutamine uptake, cell proliferation and cell apoptosis were investigated by glutamine uptake, cell counting kit-8, cell colony formation, 5-Ethynyl-29-deoxyuridine, flow cytometry analysis or DNA content quantitation assay. The interactions of miR-149-5p with circSEPT9 and SLC1A5 were identified by a dual-luciferase reporter assay. Mouse model assay was carried out to analyze the effect of circSEPT9 on tumor formation <i>in vivo</i>. Results showed that circSEPT9 and SLC1A5 expression were significantly upregulated, while miR-149-5p was downregulated in BC tissues and cells as compared with paracancerous normal breast tissues and human normal breast cells. Knockdown of circSEPT9 or SLC1A5 inhibited glutamine uptake and cell proliferation, but induced cell apoptosis in BC cells. SLC1A5 overexpression relieved circSEPT9 silencing-induced repression of BC cell malignancy. In mechanism, circSEPT9 regulated SLC1A5 expression by sponging miR-149-5p. In support, circSEPT9 knockdown led to delayed tumor tumorigenesis <i>in vivo</i>. In summary, these results indicates that circSEPT9 may act an oncogenic role in BC malignant progression by regulating miR-149-5p/SLC1A5 pathway, providing a novel mechanism responsible for BC development.
DOI: 10.6084/m9.figshare.16935858.v1
title: Additional file 1 of Optimum dose of spinal ropivacaine with or without single intravenous bolus of S-ketamine during elective cesarean delivery: a randomized, double-blind, sequential dose-finding study

description: Additional file 1.
DOI: 10.6084/m9.figshare.16935798.v1
title: Additional file 2 of BDdb: a comprehensive platform for exploration and utilization of birth defect multi-omics data

description: Additional file 2: Table S2. The summary of biomarkers related to birth defects.
DOI: 10.6084/m9.figshare.13265859
title: Additional file 1 of Phylogenetic analysis and clinical characteristics of the co-occurring mutations in HA and NA genes of influenza A(H1N1)pdm09 viruses during 2015–2017 in Beijing, China

description: Additional file 1: Table 1. Nucleotide similarity of HA genes compared to vaccine strains.
DOI: 10.6084/m9.figshare.13265862.v1
title: Additional file 2 of Phylogenetic analysis and clinical characteristics of the co-occurring mutations in HA and NA genes of influenza A(H1N1)pdm09 viruses during 2015–2017 in Beijing, China

description: Additional file 2: Table 2. Amino acid similarity of HA genes compared to vaccine strains.
DOI: 10.6084/m9.figshare.13265766.v1
title: Additional file 11 of Tissue-specific Transcriptome analysis reveals lignocellulose synthesis regulation in elephant grass (Pennisetum purpureum Schum)

description: Additional file 11: Table S6. The pearson correlation analysis between RNASeq and qRT-PCR data.
DOI: 10.6084/m9.figshare.13265865.v1
title: Additional file 3 of Phylogenetic analysis and clinical characteristics of the co-occurring mutations in HA and NA genes of influenza A(H1N1)pdm09 viruses during 2015–2017 in Beijing, China

description: Additional file 3: Table 3. Nucleotide similarity of NA genes compared to vaccine strains.
DOI: 10.6084/m9.figshare.13265868.v1
title: Additional file 4 of Phylogenetic analysis and clinical characteristics of the co-occurring mutations in HA and NA genes of influenza A(H1N1)pdm09 viruses during 2015–2017 in Beijing, China

description: Additional file 4: Table 4. Amino acid similarity of NA genes compared to vaccine strains.
DOI: 10.5281/zenodo.10651092
title: What about diversity? The Effect of Organizational Economic Inequality on Perceived Presence of Women and Ethnic of Minority Groups Presence

description: These files contain the data and syntax of Moreno-Bella et al. (2022)
DOI: 10.5281/zenodo.10651093
title: What about diversity? The Effect of Organizational Economic Inequality on Perceived Presence of Women and Ethnic of Minority Groups Presence

description: These files contain the data and syntax of Moreno-Bella et al. (2022)
DOI: 10.5281/zenodo.10642261
title: IODP Expedition 390C Section-half images

description: Digital section images were taken of the flat face of split cores on the Section Half Imaging Logger (SHIL) using a linescan camera at a resolution of 20 lines/mm (50 micron pixels). Cores were imaged as soon as possible after splitting to minimize color changes that occur through oxidation and drying. The SHIL produces TIF files as well as reduced-size JPG files. The TIF files are not kept online but users may request them from the IODP-JRSO Data Librarian.
DOI: 10.5281/zenodo.10642262
title: IODP Expedition 390C Section-half images

description: Digital section images were taken of the flat face of split cores on the Section Half Imaging Logger (SHIL) using a linescan camera at a resolution of 20 lines/mm (50 micron pixels). Cores were imaged as soon as possible after splitting to minimize color changes that occur through oxidation and drying. The SHIL produces TIF files as well as reduced-size JPG files. The TIF files are not kept online but users may request them from the IODP-JRSO Data Librarian.
DOI: 10.6084/m9.figshare.13265859.v1
title: Additional file 1 of Phylogenetic analysis and clinical characteristics of the co-occurring mutations in HA and NA genes of influenza A(H1N1)pdm09 viruses during 2015–2017 in Beijing, China

description: Additional file 1: Table 1. Nucleotide similarity of HA genes compared to vaccine strains.
DOI: 10.6084/m9.figshare.13265763
title: Additional file 10 of Tissue-specific Transcriptome analysis reveals lignocellulose synthesis regulation in elephant grass (Pennisetum purpureum Schum)

description: Additional file 10: Table S5. RT-PCR primer list.
DOI: 10.6084/m9.figshare.16935858
title: Additional file 1 of Optimum dose of spinal ropivacaine with or without single intravenous bolus of S-ketamine during elective cesarean delivery: a randomized, double-blind, sequential dose-finding study

description: Additional file 1.
DOI: 10.6084/m9.figshare.22178792.v1
title: CircDHRS3 inhibits prostate cancer cell proliferation and metastasis through the circDHRS3/miR-421/MEIS2 axis

description: Prostate cancer is the most prevalent type of cancer among men worldwide. The importance of circular RNA (circRNA) in prostate cancer and its connection to malignancy has been steadily recognized. circRNA expression was obtained by circRNA sequencing of prostate cancer. circRNA and its function were further analysed. The results were verified by qRT-PCR, RIP assay, FISH, RNA pulldown, WB, CCK-8, colony formation assay and wound-healing assay. BALB/c Nude mice were used for xenograft hosts. Low expression of circDHRS3 was assessed in prostate cancer. Overexpression of circDHRS3 inhibited prostate cancer growth and migration <i>in vitro</i>. Additionally, miR-421 was shown to be the downstream target of circDHRS3, as shown by fluorescence <i>in situ</i> hybridization and dual-luciferase experiments. The rescue assay results for the PC3 and Du145 cell lines demonstrated that circDHRS3 inhibits prostate cancer cell lines’ ability to proliferate and metastasize by modulating MEIS2 expression through the circDHRS3/miR-421/MEIS2 axis. <i>In vivo</i> investigations confirmed that the overexpression of circDHRS3 could inhibit both the lung and bone metastasis of prostate cancer cells. circDHRS3 has the potential to become a biomarker and a targeted therapeutic site for prostate cancer, particularly in the malignant stage. Our study indicates that circDHRS3 inhibits prostate cancer cell proliferation and metastasis through the circDHRS3/miR-421/MEIS2 axis.
DOI: 10.6084/m9.figshare.13265787.v1
title: Additional file 7 of Tissue-specific Transcriptome analysis reveals lignocellulose synthesis regulation in elephant grass (Pennisetum purpureum Schum)

description: Additional file 7: Table S2. GO annotations of 43 differential genes used for WGCNA analysis
DOI: 10.6084/m9.figshare.13265790.v1
title: Additional file 8 of Tissue-specific Transcriptome analysis reveals lignocellulose synthesis regulation in elephant grass (Pennisetum purpureum Schum)

description: Additional file 8: Table S3. KEGG annotations of 43 differential genes used for WGCNA analysis
DOI: 10.15468/dl.p3prk2
title: Occurrence Download

description: A dataset containing 454 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Country is Ireland",
 "Country is New Zealand",
 "Country is Chile",
 "Country is Portugal",
 "Country is Norway"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Gabura fascicularis (L.) P.M.Jørg."
 ]
}

 The dataset includes 454 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009285-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rt8hmp
title: Occurrence Download

description: A dataset containing 15208 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year is greater than or equal to 1970",
 "TaxonKey is Halyomorpha halys (Stål, 1855)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 15208 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0317013-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e8z9yw
title: Occurrence Download

description: A dataset containing 275449 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Human Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Chalcoparia singalensis (Gmelin, 1789)",
 "TaxonKey is Chalcomitra senegalensis (Linnaeus, 1766)",
 "TaxonKey is Chalcomitra rubescens (Vieillot, 1819)",
 "TaxonKey is Chalcomitra hunteri (Shelley, 1889)",
 "TaxonKey is Chalcomitra fuliginosa (Bechstein, 1811)",
 "TaxonKey is Chalcomitra balfouri (P.L.Sclater & Hartlaub, 1881)",
 "TaxonKey is Chalcomitra adelberti (Gervais, 1834)"
 ]
 }
 ]
}

 The dataset includes 275449 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086179-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d3228z
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Phrynonax shropshirei (Barbour & Amaral, 1924)"
 ]
}

 The dataset includes 77 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033455-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mv2hja
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dawkinsia filamentosa (Valenciennes, 1844)"
 ]
}

 The dataset includes 80 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0295291-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7jagvb
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-8.16853 -3.07107,27.16853 -3.07107,27.16853 11.07107,-8.16853 11.07107,-8.16853 -3.07107))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Brachystegia eurycoma Harms"
 ]
}

 The dataset includes 92 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062126-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.