cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/069-vl0-j4s
title: Lasiocampa trifolii [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r1q-860-afl
title: Malacosoma neustria (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xmv-973z
title: Breda Overakkerstraat 99-111 Inventariserend veldonderzoek door middel van proefsleuven

description: &lt;p&gt;Het onderzoek heeft geen sporen en vondsten ouder dan de nieuwe tijd opgeleverd. Er zijn 2 greppels(structuren), 2 kuilen, 5 mogelijke paalkuilen en verschillende natuurlijke sporen gedocumenteerd. De kuilen en mogelijke paalkuilen die tijdens het onderzoek zijn aangetroffen dateren allen uit de nieuwe tijd. En vormen geen structuur. De functie van deze sporen was niet vast te stellen. Het onderzoek heeft twee greppels zichtbaar gemaakt die geprojecteerd kunnen worden op het kadastrale minuutplan. Beide greppels waren niet herkenbaar als perceelsgrens op het kadastrale minuutplan uit 1824. Een greppelstructuur kon gedateerd worden in de 17e eeuw en is mogelijk gerelateerd aan activiteiten uit de tachtigjarige oorlog. De exacte functie van de greppel was niet te achterhalen. De andere greppel was herkenbaar als perceelsgrens op de topografische kaart van 1869 en is dus jonger.&lt;/p&gt;
description: Date: 2011-01-24 (veldwerk)
DOI: 10.3535/1sr-c13-f40
title: Macrothylacia rubi (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4g5-mr8-vvq
title: Delias meeki Rothschild, 1904

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g61-1xy-343
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wb1-2z6-9fc
title: Pyronia bathseba (Fabricius, 1793)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xmv-abhd
title: Plangebied Olympus-Rijnhal, gemeente Arnhem; archeologisch vooronderzoek: een bureau- en inventariserend veldonderzoek (verkennend booronderzoek)
title: AROR

description: &lt;p&gt;geen vondsten&lt;/p&gt;
description: Date: 01/10/2013 (veldwerk)
DOI: 10.3535/3jh-aav-pxs
title: Delias flavistriga Roepke, 1955

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l95-9p5-k2b
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fz2-986-e9n
title: Collita griseola (Hübner, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xmv-abxf
title: PAN-00047299 - hair pin with onion-shaped head

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00047299&lt;/p&gt;
description: Modified: 2019-10-11T16:57:31+02:00
DOI: 10.3535/khm-a7j-vrs
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kqf-5yx-205
title: Nola holsatica Sauber, 1916

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yel-gar-4rh
title: Coscinia cribraria (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xmv-akwx
title: PAN-00035378 - lead block weight

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00035378&lt;/p&gt;
description: Modified: 2019-10-11T15:41:44+02:00
DOI: 10.3535/ahx-zsp-94s
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xee-cbq-xre
title: Tethea (Tethea) ocularis (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tje-r91-859
title: Tetheella fluctuosa (Hübner, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zw1-jr9-egs
title: Nola cucullatella (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.7jde8j
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Striga asiatica (L.) Kuntze",
 "Country is Lesotho",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089767-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/dans-xmv-c2jc
title: PAN-00056306 - eye brooch

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00056306&lt;/p&gt;
description: Modified: 2019-10-28T09:36:35+01:00
DOI: 10.3535/7dx-h2p-jyf
title: Collita griseola (Hübner, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wzf-v1w-8a5
title: Delias pheres Jordan, 1912

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dvb-c2n-7pv
title: Cybosia mesomella (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fsm-n5k-73k
title: Coscinia cribraria (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xmv-cdnd
title: Project Dertien Provinciën Nieuwe ontdekkingen op de resten van de Romeinse Maasbruggen Deel II

description: &lt;p&gt;This report describes the results of underwater surveys at the remains of the Roman bridges in the Meuse at Maastricht&lt;/p&gt;
description: Date: 2020-08-15
DOI: 10.6084/m9.figshare.c.3612239_d1
title: MOESM4 of Parameter set for computer-assisted texture analysis of fetal brain

description: Additional file 4: Dataset 4. Data for supplemental trial runs: 36 × 1.5 T; 36 × 3 T; group 1: 20–28 weeks; group 2: 29–40 weeks.
DOI: 10.6084/m9.figshare.c.3612239_d2
title: MOESM3 of Parameter set for computer-assisted texture analysis of fetal brain

description: Additional file 3: Dataset 3. Raw texture analysis/Fisher coefficient: ➤ appendix 1, ➤ appendix 2, ➤ appendix 3.
DOI: 10.6084/m9.figshare.c.3612245_d2
title: Additional file 4: of OncodriveFML: a general framework to identify coding and non-coding regions with cancer driver mutations

description: An Excel file containing information on lncRNAs probed for FM bias. The first sheet contains a README file with details on the contents of the other two sheets. The second sheet contains the list of all lncRNAs probed, a summary of their biological function, and the original source from which we extracted them. The third sheet contains the FM bias p value computed for each significantly FM biased lncRNA in each cohort. (ODS 13 kb)
DOI: 10.6084/m9.figshare.c.3612239_d3
title: MOESM2 of Parameter set for computer-assisted texture analysis of fetal brain

description: Additional file 2: Dataset 2. Effects of pull-down conversion: 12/16-bits grayscale DICOM to 8-bit BMP (RGB-24).
DOI: 10.6084/m9.figshare.c.3612239_d4
title: MOESM5 of Parameter set for computer-assisted texture analysis of fetal brain

description: Additional file 5. MaZda Package v5 RC HG (release candidate: Hugues Gentillon): this pre-release (beta) version contains: 1) MaZda version 5 for achromatic and chromatic image analysis, 3D editing, feature extraction & selection, geometrical features for ROIs; 2) B11 version 3.3 for feature clustering, image segmentation, unsupervised & supervised classification.
DOI: 10.6084/m9.figshare.c.3612245_d3
title: Additional file 3: of OncodriveFML: a general framework to identify coding and non-coding regions with cancer driver mutations

description: An Excel file containing all significantly FM biased genomic elements, both coding and non-coding detected across all mutational datasets analyzed. The file is organized in tabs each corresponding to the results in one dataset. (ODS 57 kb)
DOI: 10.6084/m9.figshare.c.3612323_d1
title: Additional file 1: of Geometric analysis of indications for minimally invasive distal metatarsal osteotomy in treatment of hallux valgus

description: Freeware computer program - MIDMO. A freeware computer program in .XLS format allows preoperative planning of MIDMO in individual patients. The required input parameters include measurements of α, W, E, L and x from anetrior-posterior standing radiograph of the foot. (XLS 27 kb)
DOI: 10.6084/m9.figshare.c.3612332_d1
title: Additional file 1: of Dietary mineral supplies in Malawi: spatial and socioeconomic assessment

description: Tables S1 to S30 Joy et al. Tables S1 â   S30 provide: supporting information regarding the integration of food supply and composition datasets; summaries of results by household environmental and socioeconomic factors; and summaries of results by Extension Planning Area (EPA). (XLSX 995Â kb)
DOI: 10.6084/m9.figshare.c.3612374_d1
title: Additional file 1: Table S1. of 
                     De novo transcriptome sequencing in Bixa orellana to identify genes involved in methylerythritol phosphate, carotenoid and bixin biosynthesis

description: BLASTX comparison between the B. orellana transcriptome against three databases. Table S2. BLASTN comparison between the B. orellana transcriptome and the previous EST library created by Jako and co-workers [GenBank: LIBEST_025681 BIXA]. Table S3. Gene Ontology (GO) annotation. Table S4. Kyoto Encyclopedia of Genes and Genomes (KEGG) annotation. Table S5. Pairwise comparison between amino acid sequences of carotenoid cleavage dioxygenase proteins. Table S6. RT-qPCR primers. Table S7. BLASTx comparison between the B. orellana transcriptome and previously identified B. orellana proteins .Table S8. Subcellular localization predictions for the BoCCD, BoALDH and BoSABATH proteins. Table S9. Accession number of proteins used in Fig. 1. (ZIP 15364 kb)
DOI: 10.6084/m9.figshare.c.3612350_d5
title: Additional file 3: of Combined genetic effects of EGLN1 and VWF modulate thrombotic outcome in hypoxia revealed by Ayurgenomics approach

description: Total scores of protective alleles in combined genotypes of VWF and EGLN1 in high altitude and a genetically related low altitude population in India.
DOI: 10.6084/m9.figshare.c.3612374_d2
title: Additional file 2: Figure S1. of 
                     De novo transcriptome sequencing in Bixa orellana to identify genes involved in methylerythritol phosphate, carotenoid and bixin biosynthesis

description: Evolutionary relationship of CCDs proteins. Figure S2. Evolutionary relationship of ALDH proteins. Figure S3. Evolutionary relationship of SABATH methyltransferases proteins. Figure S4. Evolutionary relationship of DXS proteins. (ZIP 410 kb)
DOI: 10.6084/m9.figshare.c.3612398_d1
title: Additional file 3: of Genomic and proteomic evidence supporting the division of the plant pathogen Ralstonia solanacearum into three species

description: MALDI-TOF peak lists. Peak lists extracted from MALDI-TOF spectrum for 73 R. solanacearum strains with FlexAnalysis software (Bruker Daltonics). (ZIP 76 kb)
DOI: 10.6084/m9.figshare.c.3612398_d2
title: Additional file 2: of Genomic and proteomic evidence supporting the division of the plant pathogen Ralstonia solanacearum into three species

description: Bacterial strains used for proteomic analysis. Phylotype and sequevar classifications for the strains in the R. solanacearum species complex were determined as previously described [14]. The sequenced strains are highlighted in green. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3612398_d3
title: Additional file 1: of Genomic and proteomic evidence supporting the division of the plant pathogen Ralstonia solanacearum into three species

description: Genomic distance matrices. Pairwise comparisons of 29 sequenced genomes from the R. solanacearum species complex using the ANI, MUMi and GGDC methods. The orange, blue and green cells represent strains clustered into species using the criteria specific to each method and corresponding to 70Â % DDH. (XLSX 45 kb)
DOI: 10.15468/dl.xmb46p
title: Occurrence Download

description: A dataset containing 9607 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "OccurrenceStatus is Present",
 "TaxonKey is Vultur gryphus Linnaeus, 1758"
 ]
}

 The dataset includes 9607 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032748-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3612413_d7
title: Additional file 5: Table S2. of A tissue-specific protein purification approach in Caenorhabditis elegans identifies novel interaction partners of DLG-1/Discs large

description: All proteins identified, organized by bait protein. (XLSX 140 kb)
DOI: 10.6084/m9.figshare.c.3612419_d5
title: Additional file 10: of Genetic association and stress mediated down-regulation in trabecular meshwork implicates MPP7 as a novel candidate gene in primary open angle glaucoma

description: Contains table representing association data of all SNPs showing suggestive association (pâ
DOI: 10.6084/m9.figshare.c.3612443_d2
title: Additional file 3: Table S3. of Is genotyping of single isolates sufficient for population structure analysis of Pseudomonas aeruginosa in cystic fibrosis airways?

description: Coverage of PAO1 by the metagenomes, coverage with &gt;3 reads per position and phred score &gt;30. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.c.3612443_d3
title: Additional file 5: Table S5. of Is genotyping of single isolates sufficient for population structure analysis of Pseudomonas aeruginosa in cystic fibrosis airways?

description: Detailed overview of SNPs found in single isolates and the rediscovery in the metagenomic reads. For each isolate it is indicated whether the mutation has been discovered or not, indicated by 1 and 0 respectively. For each metagenome the percentage of reads (%) representing the SNP found in the single isolates are shown together with the actual number of reads that have been called for each base, C, G, A, and T. For the metagenome(s) it is indicated at the bottom of the column the number of SNPs rediscovered in &gt;10, 50 and 90Â % of the metagenomic reads, as well as the total number of SNPs covered by the metagenomic reads. (XLSX 239 kb)
DOI: 10.6084/m9.figshare.c.3612419_d7
title: Additional file 9: of Genetic association and stress mediated down-regulation in trabecular meshwork implicates MPP7 as a novel candidate gene in primary open angle glaucoma

description: Contains table representing association of published SNPs form reported loci. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3612443_d4
title: Additional file 1: Table S1. of Is genotyping of single isolates sufficient for population structure analysis of Pseudomonas aeruginosa in cystic fibrosis airways?

description: Sampling information of metagenomes. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3612452_d1
title: Additional file 1 of CyTRANSFINDER: a Cytoscape 3.3 plugin for three-component (TF, gene, miRNA) signal transduction pathway construction

description: ∙ srl.txt: the file containing the SRL. ∙ dgl.txt: the file containing the DGL. ∙ Indirect-miRNA-STPP.xlsx: an excel file containing the full list of 312 Indirect miRNA STPPs identified by CyTRANSFINDER using human miR-146a as the source intergenic miRNA and miR-146a 223 target genes according to TargetScan 5.2 as DGL. Results are computed using miRNA targets confirmed in at lease one source database. SmiRNA: source intragenic miRNA; TF: Transcription Factor; DG: Destination Gene. (ZIP 201 kb)
DOI: 10.6084/m9.figshare.c.3612419_d8
title: Additional file 8: of Genetic association and stress mediated down-regulation in trabecular meshwork implicates MPP7 as a novel candidate gene in primary open angle glaucoma

description: Contains table representing haplotype association of tag SNPs of MPP7 locus in East Indian population. (XLS 21Â kb)
DOI: 10.6084/m9.figshare.c.3612443_d5
title: Additional file 4: Table S4A. of Is genotyping of single isolates sufficient for population structure analysis of Pseudomonas aeruginosa in cystic fibrosis airways?

description: Isolate and metagenome information of clone type (for the metagenomes this is the clone type that is supposed to be dominating, assumed from the single isolate information of the given patient). Table S4B: Genome comparisons of single isolates and metagenomes. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.c.3612452_d2
title: Additional file 2 of CyTRANSFINDER: a Cytoscape 3.3 plugin for three-component (TF, gene, miRNA) signal transduction pathway construction

description: ∙ srl.txt: the file containing the SRL. ∙ dgl.txt: the file containing the DGL. ∙ Indirect-miRNA-STPP.xlsx: an excel file containing the full list of 312 Indirect miRNA STPPs identified by CyTRANSFINDER using human miR-146a as the source intergenic miRNA and miR-146a 223 target genes according to TargetScan 5.2 as DGL. Results are computed using miRNA targets confirmed in at lease one source database. SmiRNA: source intragenic miRNA; TF: Transcription Factor; DG: Destination Gene. an excel file containing the full list of 292 Double Indirect miRNA STPPs identified by TransFINDER using DNM3 as the Source Gene, the cognate human intragenic miR-214 as source intragenic miRNA (SmiRNA) and a previously described signature of 73 genes whose expression was driven by miR-214 [33] as destination genes (DG). TF: Transcription Factor; TF target (Gene): Transcription Factor target gene, which is also the host gene for a miRNA; intragenic miRNA: miRNA located inside the TF target gene; DG: Destination Gene, list of targets of the intragenic miRNAs predicted by at least two algorithms TS: Transcription Factor. (ZIP 192 kb)
DOI: 10.6084/m9.figshare.c.3612461_d1
title: Additional file 2: of Teaser: Individualized benchmarking and optimization of read mapping results for NGS data

description: Configuration file used to benchmark Bowtie2 and demonstrates the simplicity of benchmarking 34 parameters using Teaser. (TXT 442 bytes)
DOI: 10.6084/m9.figshare.c.3612509_d1
title: Additional file 14: Table S2. of Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies

description: Chimeras removed from dataset B3. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3612509_d3
title: Additional file 9: Figure S8. of Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies

description: A. Spike-in retrieval as a function of number of positive samples, by dataset size. Aggregated results across 150 iterations of multiplicative spike-ins of magnitude 5 with 50% cases, in datasets A1, A1s, and A1m. Each dot represents a spiked OTU. The Y-axis displays its p value quantile (0 is lowest p value, 1 is highest p value) within that DA run, and the X axis shows how many samples are positive (nonzero) for that OTU. Results from the three datasets are overlaid with different colors and faceted by statistical method. B. Spike-in retrieval as a function of number of positive samples, by case proportion. Aggregated results across 150 iterations of multiplicative spike-ins of magnitude 5 with 10, 25, or 50% cases, in dataset A1. Each dot represents a spiked OTU. The Y-axis displays its p value quantile (0 is lowest p value, 1 is highest p value) within that DA run, and the X axis shows how many samples are positive (nonzero) for that OTU. Results from the three case proportions are overlaid with different colors, and faceted by statistical method. C. Spike-in retrieval as a function of number of positive samples, by spike-in magnitude. Aggregated results across 150 iterations of multiplicative spike-ins of magnitudes 0.5, 2, 5, 10, and 20 with 50% cases, in dataset A1. Each dot represents a spiked OTU. The Y-axis displays its p value quantile (0 is lowest p value, 1 is highest p value) within that DA run, and the X axis shows how many samples are positive (nonzero) for that OTU. Results from the different spike-in magnitudes are overlaid with different colors, and faceted by statistical method. (ZIP 16398 kb)
DOI: 10.6084/m9.figshare.c.3612518_d1
title: Additional file 1: Table S1. of Population whole-genome bisulfite sequencing across two tissues highlights the environment as the principal source of human methylome variation

description: Sequencing statistics summary. Table S2. Genome feature association of filtered variant-removed CpGs for adipose and blood. Table S3. Characteristics of unmethylated (UMR) and low-methylated regions (LMR) in adipose and blood. Table S4. Number of invariable sites in filtered datasets at various minimum coverages. Table S5. pDMR statistics in adipose and blood. Table S6. Result of the TFBS motif analysis using the HOMER software. Table S7. MZ2 vs. MZ3-derived significant DMCs overlapping known smoking methylation loci. Table S8. Genetic and non-genetic effect of CpG methylation. Table S9. Overall detected CpH methylation per tissue and strand. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.c.3612518_d2
title: Additional file 2: Figure S1. of Population whole-genome bisulfite sequencing across two tissues highlights the environment as the principal source of human methylome variation

description: Number of detected CpG-sites per mean genome coverage. Figure S2. Overall CpG-site methylation levels. Figure S3. DNA methylation footprint in adipose tissue and blood. Figure S4. Invariable CpG tissue distribution and genomic feature association. Figure S5. Invariable CpG tissue distribution and genomic feature association for sites detected in â Ľ5 individuals. Figure S6. Invariable CpG tissue distribution and genomic feature association for sites detected in â Ľ10 individuals. Figure S7. Differential methylation level distribution. Figure S8. Genomic feature association of pDMCs. Figure S9. Genomic feature association of pDMRs. Figure S10. Genome feature association of DMCs of genetic vs. environmental origin. Figure S11. Proportion of eDMCs on total DMCs and eDMC genomic feature association. Figure S12. CpH methylation within sequence context. Figure S13. Overlap of methylation data with Encode blacklisted regions. Figure S14. CpG-site annotation scheme. Figure S15. pDMR definition. Additional Figure legends. (ZIP 1855 kb)
DOI: 10.6084/m9.figshare.c.3612509_d6
title: Additional file 7: Figure S6. of Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies

description: A. False positive rate distributions for datasets A1s–A3s and A1m–A3m. Violin plot of distributions of false positive rate (FPR) in 150 iterations for datasets A1s–A3s and A1m–A3m (vertical panels), analyzed with all differential relative abundance methods (horizontal panels). FPR is defined as the fraction of OTUs with p
DOI: 10.6084/m9.figshare.c.3612533_d1
title: Additional file 1 of Plasma tenofovir trough concentrations are associated with renal dysfunction in Japanese patients with HIV infection: a retrospective cohort study

description: Data regarding the 11 patients. (XLSX 10Â kb)