cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26037/yareta:55kwf2vdxnedzffbcqzoywon64
title: Green Public Procurement of Clothing: Evidence from Swiss Tendering During a Major Legal Change (and Belgian robustness check)

description: calls_dataset_20231127_HO_1_v2 contains a spreadsheet which describes various characteristics of all Swiss public calls for tenders published to procure textile products between 2018 and 2022. It focuses on Green Public Procurement presence and quality.

calls_dataset_20240131_HO_1_v1 contains a spreadsheet which describes Belgian public calls for tenders published to procure textile products between 2018/01/01 and 2019/06/31, and between 2021/07/01 and 2022/12/31. It focuses on Green Public Procurement presence.

Supplementary metadata can be found in the readme files.

The data supports a publication.
DOI: 10.26037/yareta:5w7luymjcncd3ipjm3v76bqezm
title: Architecture of the MKK6-p38α complex defines the basis of MAPK specificity and activation

description: > Molecular Dynamics simulations data.

The list of the trajectories in this repository corresponds to the list of the simulations reported in,                                                                                                                                          
"Table S6. Summary of the unbiased simulations of the p38-MKK6"

All simulations were run with the GROMACS 2021.3 simulation package.
When restraints were applied at the interface of the two kinases during simulations, the restraints were applied using PLUMED 2.4.1.

Each directory has a "struc_for_trajectories.pdb" file, which is a PDB structure that can be used to load the trajectories of the subdirectories.

*** p38α-MKK6 ***

> no_restraints: independent unbiased simulations starting from the same conformation but with different initial velocities
> A-loop_close_to_ATP: simulations started from a conformation originating from the restrained simulations of p38α-MKK6GRA, where p38_ Y182 was close to MKK6 ATP
> adaptive: simulations corresponding to the different epochs that were explored during the adaptive sampling simulations
> MD_topology_files: topology files that were used for all the reported simulations
> with_restraints: simulations where harmonic restraints on the interface interactions have been applied to stabilise the relative orientation of the monomers in the complex. The plumed file that was used to apply the restraints during the simulation is also included.


*** p38α-MKK6WT ***

> no_restraints: independent unbiased simulations
> MD_topology_files: topology files that were used for all the reported simulations
> adaptive: simulations corresponding to the different epochs that were explored during the adaptive sampling simulations


> SAXS refined ensembles

Ensemble of conformations resulting from the total of the MD simulations run after being refined using an iterative Bayesian/Maximum Entropy (iBME) protocol to obtain a structural ensemble that reflects the states captured in the SAXS data.

*** Ensemble obtained through fitting to the MKK6DDGRA + p38αWT + ADP + SAXS curve (Fig. S2) ***

fitting_to_ADP: PDB files of the conformations that correspond to this ensemble

*** Ensemble obtained through fitting to the MKK6DDGRA + p38αWT + ADP + AMP-PCP SAXS curve (Fig. S2) ***

fitting_to_AMP: PDB files of the conformations that correspond to this ensemble
DOI: 10.26037/yareta:6mapzkwfp5advdcn44p3xv6uce
title: Hall response of locally correlated two-dimensional electrons at low density

description: Data set for Physical Review Research 6, 013112 (2024), https://doi.org/10.1103/PhysRevResearch.6.013112
DOI: 10.26037/yareta:7bb4ivdkprfanmqxguaa6kwgou
title: Bouzidi_Gendolla_Conflict_Prime_Difficulty

description: Data and data coding of the experiment reported in:

Yann S. Bouzidi & Guido H. E. Gendolla

Cognitive Conflict Does not Always Mean High Effort: Task Difficulty’s Moderating Effect on Cardiac Response
DOI: 10.26037/yareta:beczz67s75d5xhk3xbjrzovipi
title: GlycansToGraphs: visualizing and simplifying complex mass spectra

description: GlycansToGraphs, is  a open source software written in python and running in Streamlit used to identify and visualize relationships between masses in MS or MS/MS spectra. The package contains the GlycansToGraphs, a TOML file and one example file
DOI: 10.26037/yareta:cnzjsjpuxnbqhovwek2d4skmom
title: SNF Project 100014_185348 “Affective Influences on Goal Pursuit: The Moderating Role of Deliberation”

description: Data of Unpublished Experiments (UEs)
DOI: 10.26037/yareta:cpcnmarfcvhnlf4ijcfnuvmm2e
title: Correlative imaging of ferroelectric domain walls

description: The wealth of properties in functional materials at the nanoscale has attracted tremendous interest over the last decades, spurring the development of ever more precise and ingenious characterization techniques. In ferroelectrics, for instance, scanning probe microscopy based techniques have been used in conjunction with advanced optical methods to probe the structure and properties of nanoscale domain walls, revealing complex behaviours such as chirality, electronic conduction or localised modulation of mechanical response. However, due to the different nature of the characterization methods, only limited and indirect correlation has been achieved between them, even when the same spatial areas were probed. Here, we propose a fast and unbiased analysis method for heterogeneous spatial data sets, enabling quantitative correlative multi-technique studies of functional materials. The method, based on a combination of data stacking, distortion correction, and machine learning, enables a precise mesoscale analysis. When applied to a data set containing scanning probe microscopy piezoresponse and second harmonic generation polarimetry measurements, our workflow reveals behaviours that could not be seen by usual manual analysis, and the origin of which is only explainable by using the quantitative correlation between the two data sets.
DOI: 10.26037/yareta:dc7w76cgl5fytjang6wyzuaitm
title: Affective Multimodal Counter-Strike video game dataset (AMuCS) - PRIVATE

description: This dataset is complementary to the main AMuCS dataset, and consists of face videos of 250 participants. Access is forbidden for any third party.
DOI: 10.26037/yareta:dojdcgrsrfca5mello75cgiscq
title: Photoinduced Electron Transfer between Dipolar Reactants: Solvent and Excitation-Wavelength Effects

description: Data presented in: 'Photoinduced Electron Transfer between Dipolar Reactants: Solvent and Excitation-Wavelength Effects', P. Verma, D. Budkina and E. Vauthey, J. Phys. Chem. B, 128 (2024) 128, 1231-1240. (https://doi.org/10.1021/acs.jpcb.3c07922)
DOI: 10.26037/yareta:gvvoc4wfsfhupm4ygge26wupnm
title: OBSOLETE - Affective Multimodal Counter-Strike video game dataset (AMuCS) - Public

description: This dataset is obsolete, please use the updated dataset here: 10.26037/yareta:wqmr4bkmrvhc3jkqcscluehjyi 

***
This dataset consists of data collected from 245 participants. It was recorded at four large LAN events in Switzerland which took place between October 2020 and April 2022. Physiological and behavioural data was recorded from groups of 2 or 4 participants playing a round of team deathmatch in the game CounterStrike: Global Offensive. The gameplay was then continuously self-annotated according to either valence or arousal.

***
To gain access to this dataset please follow this procedure:
1. request access using the corresponding button;
2. you need a switch-edu account to register, anyone is entitled to create such an account;
3. download, sign and attach the EULA to the request form;
4. we will then accept your demand upon verification.
***
DOI: 10.26037/yareta:kzx5tn5dincynif3hk44jvhmiy
title: N-acetylglucosamine supplementation fails to bypass the critical acetylation of glucosamine-6-phosphate required for Toxoplasma gondii replication and invasion 

description: Study of the function of GNA1 in Toxoplasma gondii with detailed analysis of aminosugar pathway via LC-MS and GC-MS

Abstract for this study:
The cell surface of Toxoplasma gondii is rich in glycoconjugates which hold diverse and vital functions in the lytic cycle of this obligate intracellular parasite. Additionally, the cyst wall of bradyzoites, that shields the persistent form responsible for chronic infection from the immune system, is heavily glycosylated. Formation of glycoconjugates relies on activated sugar nucleotides, such as uridine diphosphate N-acetylglucosamine (UDP-GlcNAc). The Glucosamine-phosphate-N-acetyltransferase (GNA1) generates N-acetylglucosamine-6-phosphate critical to produce UDP-GlcNAc. Here, we demonstrate that downregulation of T. gondii GNA1 results in a severe reduction of UDP-GlcNAc and a concomitant drop in glycosylphosphatidylinositol (GPI), leading to impairment of the parasite’s ability to invade and replicate in the host cell. Surprisingly, attempts to rescue this defect through exogenous GlcNAc supplementation fail to completely restore these essential functions. In depth metabolomic analyses elucidate diverse causes underlying the failed rescue: utilization of GlcNAc is inefficient under glucose-replete conditions and fails to restore UDP-GlcNAc levels in GNA1-depleted parasites. In contrast, GlcNAc-supplementation under glucose-deplete conditions fully restores UDP-GlcNAc levels but fails to rescue the defects associated with GNA1 depletion. Our results underscore the essentiality of GlcN6P acetylation in governing T. gondii replication and invasion and highlight the potential of the evolutionary divergent GNA1 in Apicomplexa as a target for the development of much-needed new therapeutic strategies.

Conditions of Sample Prep and Analysis are provided in the manuscript
DOI: 10.26037/yareta:niobwc65jrcphhgaplksfh52yi
title: Open Med Scholars

description: This folder contains four subfolders representing the results of bibliographic research conducted on the Google Scholar search engine using the Publish or Perish tool for the period from 2011 to 2023.
The first subfolder contains the results of the search query "Open scholar," the second subfolder contains the results of the search query "open researcher," the third subfolder contains the results of the search query "open educator," and the fourth subfolder contains the results of the compilation of the results from the three search queries.
Each folder contains four files:
1.	An Excel file with raw results containing three sheets:
a. A sheet titled "metrics" providing metric data for the research.
b. A sheet titled "results" presenting the research results.
c. A sheet titled "APA" providing the bibliographic references for the research.
2.	A file of bibliographic references in Bibtex format.
3.	The text corpus in .txt format.
4.	An image representing the similarity or co-occurrence graph of wordsin .gpg format.
DOI: 10.26037/yareta:q2a4hokunzdmhdjrqd7unsnvdm
title: Gut Microbiome and intestinal inflammation in preclinical stages of rheumatoid arthritis

description: Processed data set allow the generation of output figures from Gilbert BTP, Tadeo RYT, Lamacchia C, et al RMD Open 2024;:1–12. doi: rmdopen-2023-003589
DOI: 10.26037/yareta:qtkuoibmhndc3jxcwtwzo7eeey
title: Drug-resistant EGFR lung cancer mutations promote tumor growth by stabilizing interfaces in ligand-free signaling-competent EGFR oligomers 

description: Initial coordinate and simulation input files to reproduce the reported simulations.                                                                                                                                                                        
The initial coordinates for the production simulations correspond to the final frame from the restrained equilibration in the NPT ensemble that is described in the Supplementary Information. 

The conformations of the transmembrane domain (TMD) included in the repository were kindly given to us by Dr. Vittorio Limongelli and correspond to the TMD conformations reported in,
Lelimousin, M., Limongelli, V. & Sansom, M. S. P. Conformational Changes in the Epidermal Growth Factor Receptor: Role of the Transmembrane Domain Investigated by Coarse-Grained MetaDynamics Free Energy Calculations. J. Am. Chem. Soc. 138, 10611–10622 (2016). DOI: 10.1021/jacs.6b05602

All simulations were run using the GROMACS v.2020.3 package.
DOI: 10.26037/yareta:rpjpkmf4qfgpzosfdit4gnly7e
title: Thermal and electrostatic tuning of surface phonon-polaritons in LaAlO3/SrTiO3 heterostructures

description: Phonon polaritons are promising for infrared applications due to a strong light-matter coupling and subwavelength energy confinement they offer. Yet, the spectral narrowness of the phonon bands and difficulty to tune the phonon polariton properties hinder further progress in this field. SrTiO3 – a prototype perovskite oxide - has recently attracted attention due to two prominent far-infrared phonon polaritons bands, albeit without any tuning reported so far. Here we show, using cryogenic infrared near-field microscopy, that long-propagating surface phonon polaritons are present both in bare SrTiO3 and in LaAlO3/SrTiO3 heterostructures hosting a two-dimensional electron gas. The presence of the two-dimensional electron gas increases dramatically the thermal variation of the upper limit of the surface phonon polariton band due to temperature dependent polaronic screening of the surface charge carriers. Furthermore, we demonstrate a tunability of the upper surface phonon polariton frequency in LaAlO3/SrTiO3 via electrostatic gating. Our results suggest that oxide interfaces are a new platform bridging unconventional electronics and long-wavelength nanophotonics.
DOI: 10.26037/yareta:svgduri6snbhzbydelfzsxme34
title: Influence of magnetism on vertical hopping transport in CrSBr

description: Data set for: Physical Review Research (2024)
https://doi.org/
DOI: 10.26037/yareta:wpofdjvuwng7vkd45jzzmw24ye
title: Cellosaurus release 48

description: Release 48 of the Cellosaurus
DOI: 10.26037/yareta:wvof5avga5bztkrcea2u6wzmym
title: K.9128+

description: K.9128 + K.9203 + K.9428 + K.13300
Photographs by the Shumma alu team (FNS projects nos. 175970 and 205122)
DOI: 10.26037/yareta:z4gdpzptyza7fe766xt3xi2cay
title: TestBeam Data April 2023 CERN PS

description: Data taken at test particle beams at CERN PS in April 2023.

Description of the particle beam type and momentum, and of the detector configuration for each data acuisition run is given in the file LOGBOOK/LogBook PAN 202304 - PAN.csv
Description of the Silicon Tracker Strips VATA setting is given in the file LOGBOOK/LogBook PAN 202304 - VATA settings.csv

DATA taken by the Tracker Strips, Pixels, and TOF are stored in the directories Strips, Pixels, and TOF respectively. 

Pixels and Tracker Strips data have been acquired synchronously. The corresponding data are organized in sub-directories named after the date and time at which the data were acquired and corresponding to the list given in LOGBOOK/LogBook PAN 202304 - PAN.csv. Inside each sub-directory the filename indicates the detector board id, data type ( trigger , calibration or beam data) and the settings, the date, and time of acquisition. Inside each file the header lists the variables stored, and for the Pixels it also describes the detector setting (temperatures, voltages, etc.).

The TOF data have been taken asynchronously. The corresponding data are organized in sub-directories named after the date at which the data were acquired. Inside each sub-directory the filename indicates the detector board id, data type ( trigger , calibration or beam data) and the settings, the date, and time of acquisition.
DOI: 10.26037/yareta:5ci4xjzzsrg3bdyt2n6fvjc5xi
title: Controlling crystal cleavage in focused ion beam shaped specimens for surface spectroscopy.

description: Source data of manuscript "Controlling crystal cleavage in focused ion beam shaped specimens for surface spectroscopy" by A. Hunter, C. Putzke et al. published in Review of Scientific Instruments.
DOI: 10.26037/yareta:6hw6dchjejaojd2djdbt3m4h6a
title: X-Ray Absorption Spectroscopy to investigate precipitated oxides in Nb3Sn wires with an internal oxygen source

description: Internal oxidation can achieve significantly enhanced Jc in Nb 3 Sn wires, but the mechanism of oxygen transport and oxide precipitation is not fully understood. Our investigation employs X-ray Absorption Near-Edge Structure (XANES) spectroscopy, revealing insights into the oxidation of Zr and its interaction with oxygen in different areas of the wire cross section. We discovered that in samples reacted at 650 °C the majority of Zr in the Nb 3 Sn layer is oxidized as ZrO 2 , whereas it predominantly remains non-oxidized within the residual alloy. This is an interesting finding especially for samples where oxygen has to diffuse first through the entire layer of Nb alloy to reach the regions where Nb 3 Sn will form. The onset critical temperature ( Tc ) of the residual Nb alloy was the lowest in such samples, most probably due to a higher content of interstitial oxygen resulting from the diffusion gradient. This report adds to existing indications that ZrO 2 precipitates in superconductors employing internal oxidation are only located within the Nb 3 Sn layer and opens new avenues of research on the formation of this precipitates.
DOI: 10.26037/yareta:6ibtep6aaragtdult2ec6imnxu
title: Influence of the Heat Treatment on the Layer JC of Internal-Sn Nb3Sn Wires With Internally Oxidized Nanoparticles

description: We evaluated various heat treatments (HT) for maximizing the Nb 3 Sn layer thickness while retaining a refined grain microstructure in low filament count internal-Sn Nb 3 Sn Rod-In-Tube wires with internally oxidized nanoparticles. These wires were manufactured in our laboratory using SnO 2 as oxygen source and Nb alloys containing Ta and Zr or Hf. By reacting the wires at 650 °C for 200 hours we obtained relatively thin reaction layers but high layer critical current densities (layer J C ) of ∼3000 A/mm 2 for Hf-containing wires and ∼2700 A/mm 2 for Zr-containing wires, both at 4.2 K and 16 T. Notably, both of these values are over the layer J C threshold of 2500 A/mm 2 , which is estimated to be necessary for attaining the corresponding Future Circular Collider (FCC) target non-Cu J C of 1500 A/mm 2 . Following this heat treatment, the fine-grained Nb 3 Sn area occupies only ∼35% of the filament area for Hf-containing wires and ∼20% for Zr-containing wires. After heat treatments with a reaction step at 700 °C these values increase to 70–80% and ∼60%, respectively, with only a minor increase of the grain size. However, we observed a noticeable decrease in the layer J C for these HT. Magnetic measurements show that the high J C wires exhibit a point defect contribution from precipitates to the pinning force, which is missing in wires with depressed J C values. The higher heat treatment temperatures may have caused excessive coarsening of the oxide precipitates, to sizes unsuitable for flux pinning. Reaction heat treatment temperatures in the range of 650 °C to 700 °C and durations between 50 and 200 hours may provide a better compromise between the Nb 3 Sn layer thickness, its grain size and nanoparticle size.
DOI: 10.26037/yareta:6tlnqytvq5gtlljgngfu7bjwv4
title: Apical dehydration impairs cystic fibrosis airway epithelium barrier via a β1-integrin/YAP1 pathway

description: Set of data supporting that dehydration of the CF airway surface liquid affects epithelial plasma membrane tension, resulting in ectopic activation of a β1-integrin/YAP1 signaling associated with degradation of key junctional proteins.
DOI: 10.26037/yareta:b3d5kezjknbdphefiqk5j7syfi
title: SACS-FR - Staff Attitude to Coercion Scale version française

description: Traduction française de l'échelle SACS "Staff Attitude to Coercion Scale" avec l'aimable autorisation des auteurs de la version originale Tonje Lossius Husum et Torleif Ruud. Cette échelle est composée de 15 items et consiste en une série d'affirmations sur l'utilisation de la contrainte.
DOI: 10.26037/yareta:cf4iigvvdrbzbdtpba7cqau2jm
title: Raw LC-MS/MS data for the LTP project (Titeca et al. (2024))

description: Raw Liquid Chromatography Tandem Mass Spectrometry (LC-MS/MS) data for the Lipid Transfer Protein (LTP) project (Titeca et al. (2024))
DOI: 10.26037/yareta:e7trpqz4drbrdjz75fpc3xvdny
title: Primary data of the project titled "Corporate social responsibility: The role of small and medium-sized enterprises in building democracy in post-conflict countries."

description: The file contains primary data of the SNSF project (189100) titled "Corporate social responsibility: The role of small and medium-sized enterprises in building democracy in post-conflict countries."
DOI: 10.26037/yareta:koa7pqi6vbe3tap46xx7kl22oy
title: Primary data of the  project  titled "Corporate social responsibility: The role of small and medium-sized enterprises in building democracy in post-conflict countries."

description: The file contains primary data of the SNSF project (189100) titled "Corporate social responsibility: The role of small and medium-sized enterprises in building democracy in post-conflict countries."
DOI: 10.26037/yareta:mncwrnka5nenfp6cwvtrpgh2uq
title: AMYPAD PNHS

description: AMYPAD PNHS Geneva site data
DOI: 10.26037/yareta:molvrw43jnd4jj5dssa6ors7lm
title: Franco_Impact of immersive virtual reality compared to a digital static approach in word (re)learning in post-stroke aphasia and neurotypical adults: lexical-semantic effects?

description: Materials, raw data (32 young adults + 16 people with aphasia) of Impact of immersive virtual reality compared to a digital static approach in word (re)learning in post-stroke aphasia and neurotypical adults: lexical-semantic effects?
DOI: 10.26037/yareta:ms3vlrujnnf7xkxzbaukvesv6e
title: Excited-State Symmetry Breaking in Solvent Mixtures

description: Data presented in: 'Excited-State Symmetry Breaking in Solvent Mixtures', E. Balanikas, M. Reymond-Joubin and E. Vauthey
DOI: 10.26037/yareta:xpcqve5xjzg23clrevo3gxw67m
title: Dataset for theTriple para-Functionalized Cations and Neutral Radicals of Enan-tiopure Diaza [4]Helicenes

description: Modulation of absorbance and emission is key for the design of chiral chromophores. For dyes to be of practical value in (chir)optical applications, they must also absorb and/or emit (circularly polarized) light over a wide spectral window, and often toward near infrared. In a series of derivatives bridging triaryl methyl and helicene domains, we have achieved by late-stage functionalization the regioselective triple introduction of para electron-donating or electron-withdrawing substituents. Extended tuning of electronic (e.g., E1/2red –1.50 V → –0.68 V) and optical (e.g., emission covering from 550 to 850 nm) properties is achieved for the cations and neutral radicals; the latter compounds being easily prepared by mono electron reductions under electrochemical or chemical conditions. While luminescence quantum yields can be increased up to 70% in the cationic series, strong Cotton effects are obtained for certain radicals at low energies (λabs ~ 700-900 nm) with gabs values above 10-3. The open-shell electronic nature of the radicals was further characterized by EPR revealing an important spin density delocalization that contributes to their persistence
DOI: 10.26037/yareta:ybhtwyq6h5fs5dlakw5ijib6nq
title: METADATA of the project titled "Corporate social responsibility: The role of small and medium-sized enterprises in building democracy in post-conflict countries."

description: The file contains the Metadata of the SNSF project (189100) titled "Corporate social responsibility: The role of small and medium-sized enterprises in building democracy in post-conflict countries."
DOI: 10.26037/yareta:zv337roar5ggbgq5x3fckfymdi
title: LTP MS data .raw

description: Raw LC-MS/MS data for the LTP project (Titeca et al. (2024)
DOI: 10.26037/yareta:a5liceii3ngjzazquqnctnrfsi
title: Controlling Symmetry-Breaking Charge Separation in Pyrene Bichromophores

description: Data presented in:
 'Controlling Symmetry-Breaking Charge Separation in Pyrene Bichromophores', J. Wega, K.F. Zhang, J. Lacour and E. Vauthey, J. Phys. Chem. Lett. (2024),15, 2834-2840. https://doi.org/10.1021/acs.jpclett.4c00337