cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.wqzzn2
title: Occurrence Download

description: A dataset containing 28776 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is Carex pseudocyperus",
 "Continent is Europe",
 "Year is 1985,2020",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than 1000",
 {
 "not" : {
 "CoordinateUncertaintyInMeters" : [
 "is 301"
 ]
 }
 },
 {
 "not" : {
 "CoordinateUncertaintyInMeters" : [
 "is 999"
 ]
 }
 }
 ]
}

 The dataset includes 28776 records from 164 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033818-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15829710
title: Data for: Low temperature thermal RAFT depolymerization: the effect of Z-group substituents on molecular weight control and yield

description: The labile end-groups inherent to many controlled radical polymerization methodologies, including atom transfer radical polymerization (ATRP) and reversible addition–fragmentation chain-transfer (RAFT) polymerization, can trigger the efficient chemical recycling of polymethacrylates yielding high percentages of pristine monomer. Yet, current thermal solution ATRP and RAFT depolymerization strategies require relatively high temperatures (i.e. 120–170 °C) to proceed, with slower depolymerization rates, and moderate yields often reported under milder reaction conditions (i.e. lower temperatures). In this work, we seek to promote the low temperature RAFT depolymerization of polymethacrylates via regulating the Z-group substitution of dithiobenzoate. While electron-withdrawing meta and para substituents, including trifluoromethyl (CF3) and trifluoromethoxy (OCF3), compromised the percentage of monomer recovery at 90 °C (e.g. 18% of conversion), instead the incorporation of electron-donating groups in the benzene ring, such as methoxy (OMe) and tertiary butoxy (OtBu), had a remarkable effect leading to up to four times higher conversions (e.g. 75%). Notably, electron-withdrawing Z-groups imposed control over depolymerization, reflected in the gradual decrease of the molecular weight during the reaction, as opposed to electron-donating groups which underwent a more uncontrolled depolymerization pathway. Density Functional Theory (DFT) calculations revealed accelerated bond fragmentation for electron-donating Z-groups, further supporting our findings. Taken altogether, this work highlights the importance of RAFT agent selection to either lower the reaction's temperature while maintaining high conversions, or induce control over the depolymerization.
DOI: 10.5281/zenodo.16364844
title: Data for: Low temperature thermal RAFT depolymerization: the effect of Z-group substituents on molecular weight control and yield

description: The labile end-groups inherent to many controlled radical polymerization methodologies, including atom transfer radical polymerization (ATRP) and reversible addition–fragmentation chain-transfer (RAFT) polymerization, can trigger the efficient chemical recycling of polymethacrylates yielding high percentages of pristine monomer. Yet, current thermal solution ATRP and RAFT depolymerization strategies require relatively high temperatures (i.e. 120–170 °C) to proceed, with slower depolymerization rates, and moderate yields often reported under milder reaction conditions (i.e. lower temperatures). In this work, we seek to promote the low temperature RAFT depolymerization of polymethacrylates via regulating the Z-group substitution of dithiobenzoate. While electron-withdrawing meta and para substituents, including trifluoromethyl (CF3) and trifluoromethoxy (OCF3), compromised the percentage of monomer recovery at 90 °C (e.g. 18% of conversion), instead the incorporation of electron-donating groups in the benzene ring, such as methoxy (OMe) and tertiary butoxy (OtBu), had a remarkable effect leading to up to four times higher conversions (e.g. 75%). Notably, electron-withdrawing Z-groups imposed control over depolymerization, reflected in the gradual decrease of the molecular weight during the reaction, as opposed to electron-donating groups which underwent a more uncontrolled depolymerization pathway. Density Functional Theory (DFT) calculations revealed accelerated bond fragmentation for electron-donating Z-groups, further supporting our findings. Taken altogether, this work highlights the importance of RAFT agent selection to either lower the reaction's temperature while maintaining high conversions, or induce control over the depolymerization.
DOI: 10.11588/duerer.online.6880e6ea90fd4
title: Die große Säule, https://d-nb.info/gnd/1201035414
DOI: 10.15468/dl.rxxxck
title: Occurrence Download

description: A dataset containing 131502 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Mid-winter count of water birds and other bird species in Bulgaria"
 ]
}

 The dataset includes 131502 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033819-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14861210
title: Multi-omics highlights challenges in assessing the composition and performance of microbial consortia for commercial applications

description: Supplementary data and code for "Multi-omics highlights challenges in assessing the composition and performance of microbial consortia for commercial applications".

rRNAProbesandFasta.zip contains the rRNA sequences covering a substantial proportion of rRNA undepleted by Ribo-Zero Plus and the generated probe sequences from these sequences for synthesis for supplementary depletion.

The combined 98 MAGs from short- and long-reads discussed in the manuscript are available in 98_MAGs.tar.gz. 

MAG annotations are available in: 98MAGs_BaktaOutput.zip

SqueezeExtBins.zip and SqueezeCoassemblyNF.zip contain the sqm2zip outputs for an external bins provided analysis (98_MAGs.tar.gz) and the complete SqueezeMeta workflow using coassembly on the DNA and RNA short read datasets generated. These files can be imported via SQMtools for analysis.

Ribosomal rRNA after RiboZeroPlus depletions is provided in:






NitrifyingRNA_Day0_RiboZeroPlusKit_combinedribo_R1.fastq.gz

NitrifyingRNA_Day0_RiboZeroPlusKit_combinedribo_R2.fastq.gz





The MAGs used in the supplemental rRNA probe design are in: 






SupplementalProbe_MAGs.zip





The unaligned rRNA reads not matching the above MAGs are in:

unaligned_reads.1.fastq.gz






unaligned_reads.2.fastq.gz





Additional details are available at: https://github.com/carleton-envbiotech/Consortium_meta_omics/

Raw data for phylogenetic tree generation (Figures 5A, S7,S8) are available here:  Phylogenetics.zip

Genomic regions for Clinker plot comparison (Figure 5 B) are available here: Clinker_Plot_RawData.zip

BioProject with SRA deposit for raw data available at: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1165788
DOI: 10.5281/zenodo.16108761
title: Multi-omics highlights challenges in assessing the composition and performance of microbial consortia for commercial applications

description: Supplementary data and code for "Multi-omics highlights challenges in assessing the composition and performance of microbial consortia for commercial applications".

rRNAProbesandFasta.zip contains the rRNA sequences covering a substantial proportion of rRNA undepleted by Ribo-Zero Plus and the generated probe sequences from these sequences for synthesis for supplementary depletion.

The combined 98 MAGs from short- and long-reads discussed in the manuscript are available in 98_MAGs.tar.gz. 

MAG annotations are available in: 98MAGs_BaktaOutput.zip

SqueezeExtBins.zip and SqueezeCoassemblyNF.zip contain the sqm2zip outputs for an external bins provided analysis (98_MAGs.tar.gz) and the complete SqueezeMeta workflow using coassembly on the DNA and RNA short read datasets generated. These files can be imported via SQMtools for analysis.

Ribosomal rRNA after RiboZeroPlus depletions is provided in:






NitrifyingRNA_Day0_RiboZeroPlusKit_combinedribo_R1.fastq.gz

NitrifyingRNA_Day0_RiboZeroPlusKit_combinedribo_R2.fastq.gz





The MAGs used in the supplemental rRNA probe design are in: 






SupplementalProbe_MAGs.zip





The unaligned rRNA reads not matching the above MAGs are in:

unaligned_reads.1.fastq.gz






unaligned_reads.2.fastq.gz





Additional details are available at: https://github.com/carleton-envbiotech/Consortium_meta_omics/

Raw data for phylogenetic tree generation (Figures 5A, S7,S8) are available here:  Phylogenetics.zip

Genomic regions for Clinker plot comparison (Figure 5 B) are available here: Clinker_Plot_RawData.zip

BioProject with SRA deposit for raw data available at: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1165788
DOI: 10.15468/dl.zy62km
title: Occurrence Download

description: A dataset containing 241 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Krigia wrightii"
 ]
}

 The dataset includes 241 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033821-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gp5tme
title: Occurrence Download

description: A dataset containing 916 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oedera squarrosa"
 ]
}

 The dataset includes 916 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033820-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cg6rwc
title: Occurrence Download

description: A dataset containing 5644 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Iphiclides podalirius"
 ]
}

 The dataset includes 5644 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033822-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.78hwt2
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Costa Rica",
 "TaxonKey is Guilandina urophylla"
 ]
}

 The dataset includes 33 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033823-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5p844826
title: MassIVE MSV000098615 - Metabolomica_LC-MS_Lactobacillus-plantarum_esineg
title: Analise metabolomica de Lactobacillus plantarum empregando esineg
DOI: 10.21227/xjck-1720
title: "Prompting Behaviors as Pedagogical Tools in the Age of AI: Empirical Insights for Engineering Education"

description: "This dataset accompanies the study \"Prompting and Performance: An Empirical Study of ChatGPT-4o Use in Engineering Education,\" which investigated how specific prompting behaviors with large language models (LLMs) relate to academic performance. The dataset includes anonymized AI interaction logs (prompts, responses, and timestamps), written student submissions, assignment grades, and a set of computed behavioral and writing quality metrics (e.g., Structural Complexity, Content Richness, Query Efficiency, Prompt Refinement Depth, and AI-Driven Problem-Solving). Data were collected over a 16-week stratified randomized experiment involving 128 senior engineering students across four programs. All identifying information was removed, and data sharing complies with institutional ethics approval and privacy guidelines. The dataset is intended to support reproducibility, secondary analysis, and educational research on AI-assisted learning and prompting behavior."
DOI: 10.17632/n3t4ch8584.1
title: Big data-driven target identification by machine learning: DRD2 as a therapeutic target for psoriasis

description: These raw data, programs, codes, and calculated data support the findings of our research paper entitled 'Big Data-Driven Target Identification by Machine Learning: DRD2 as a Therapeutic Target for Psoriasis.
DOI: 10.17632/8n7g6cn2st
title: Comparative metabolomic profiling reveals compositionaldifferences between horse and cow milk

description: Comparative metabolomic profiling reveals compositionaldifferences between horse and cow milk
DOI: 10.17632/8n7g6cn2st.1
title: Comparative metabolomic profiling reveals compositionaldifferences between horse and cow milk

description: Comparative metabolomic profiling reveals compositionaldifferences between horse and cow milk
DOI: 10.15468/dl.dadouy
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001229-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n8k5dx
title: Occurrence Download

description: A dataset containing 5581 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "TaxonKey is Saccorhiza polyschides (Lightf.) Batters"
 ]
}

 The dataset includes 5581 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0288265-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ybesj
title: Occurrence Download

description: A dataset containing 2648 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Anthriscus cerefolium (L.) Hoffm.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2648 records from 132 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008193-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.smtilc
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023511-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ddgegr
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023223-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zvyn8p
title: Occurrence Download

description: A dataset containing 5921 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chiroptera",
 "Country is Zambia"
 ]
}

 The dataset includes 5921 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025583-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.az3emu
title: Occurrence Download

description: A dataset containing 428726 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Anthriscus sylvestris (L.) Hoffm.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 428726 records from 865 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008203-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j6lp1g
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002087-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.62t5gh
title: Occurrence Download

description: A dataset containing 3064 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-22.63351 28.73124,63.63351 28.73124,63.63351 63.26876,-22.63351 63.26876,-22.63351 28.73124))",
 "HasCoordinate is true",
 "TaxonKey is Seseli tortuosum L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3064 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008220-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qjk5hf
title: Occurrence Download

description: A dataset containing 814 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.5_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pacifastacus leniusculus (Dana, 1852)"
 ]
}

 The dataset includes 814 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0288272-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4g4eoc
title: Occurrence Download

description: A dataset containing 1688670772 species occurrences available in GBIF matching the query:
{ }

 The dataset includes 1688670772 records from 19239 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023553-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vb2azx
title: Occurrence Download

description: A dataset listing the 14528 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Taxon occurrence data for the FungalRoot database"
 ]
}

 The dataset's 14528 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008677-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x7cnyg
title: Occurrence Download

description: A dataset containing 5250 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Machine Observation)",
 "Continent is Oceania",
 "Country is one of (Australia, Papua New Guinea, Indonesia)",
 "OccurrenceStatus is Present",
 "TaxonKey is Natator depressus"
 ]
}

 The dataset includes 5250 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008685-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aarhky
title: Occurrence Download

description: A dataset containing 6247 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((16.36027 47.87542,16.35039 47.83826,16.41952 47.83163,16.46031 47.84993,16.45816 47.87859,16.39869 47.88219,16.36027 47.87542))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2016-2025"
 ]
}

 The dataset includes 6247 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008686-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fraqa5
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Floscopa yunnanensis D.Y.Hong"
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0218532-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112045084
title: Cuneiform Tablet 1913.14.0169, Spurlock 1913.14.0169

description: [Text Description:] Administrative tablet ❧ [Text or Publication Number Note:] Spurlock 1913.14.0169; CDLI P420550 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish White (10YR 9/2) Brownish Pink (5YR 8/3) ❧ [Physical Object Note:] 7.5 x 4.5 x 2.3 cm (82g) ❧ [Physical Object Note:] Seal impressions
DOI: 10.15468/dl.e2mzy8
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Erythrolamprus sagittifer (Jan, 1863))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 72 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022413-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rnhdae
title: Occurrence Download

description: A dataset containing 8267 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Puffinus bailloni (Bonaparte, 1857))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8267 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004834-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tcqzaq
title: Occurrence Download

description: A dataset containing 1846 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chaenomeles speciosa (Sweet) Nakai",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1846 records from 134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021254-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112045119
title: Cuneiform Tablet 1913.14.0169, Spurlock 1913.14.0169

description: [Text Description:] Administrative tablet ❧ [Text or Publication Number Note:] Spurlock 1913.14.0169; CDLI P420550 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish White (10YR 9/2) Brownish Pink (5YR 8/3) ❧ [Physical Object Note:] 7.5 x 4.5 x 2.3 cm (82g) ❧ [Physical Object Note:] Seal impressions