cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.vvfuw4
title: Occurrence Download

description: A dataset containing 20201 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Carnivora, Chiroptera, Lagomorpha, Primates, Rodentia, Sirenia, Sirenia, Soricomorpha, Perissodactyla, Erinaceomorpha, Diprotodontia, Cingulata, Pilosa, Afrosoricida, Proboscidea, Proboscidea, Pholidota, Didelphimorphia, Tubulidentata, Hyracoidea, Dasyuromorphia, Monotremata, Dermoptera, Dermaptera, Paucituberculata, Microbiotheria, Notoryctemorphia, Peramelemorphia, Macroscelidea, Scandentia)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 "Year is greater than or equal to 1970",
 "CoordinateUncertaintyInMeters is less than 3000"
 ]
}

 The dataset includes 20201 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075675-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h6fq7h
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pholidocarpus sumatranus Becc."
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075676-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bug8c6
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phyllopentas austro-orientalis (Homolle & Verdc.) Kårehed & B.Bremer"
 ]
}

 The dataset includes 77 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075677-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rr6f9y
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Nepal",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Nardostachys jatamansi (D.Don) DC."
 ]
}

 The dataset includes 30 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075679-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h4a2gh
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pimpinella triternata Diels"
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075678-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qsys6e
title: Occurrence Download

description: A dataset containing 11715 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "MediaType is Image",
 "OccurrenceStatus is Present",
 "TaxonKey is Cotoneaster Medik."
 ]
}

 The dataset includes 11715 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067176-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v8aas2
title: Occurrence Download

description: A dataset containing 1732 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-76.13725 4.8426,-76.15388 4.83558,-76.16306 4.83798,-76.16817 4.83355,-76.18834 4.83225,-76.20335 4.82828,-76.21454 4.83109,-76.21938 4.82642,-76.22181 4.81721,-76.22964 4.80214,-76.24205 4.7961,-76.26256 4.79049,-76.27884 4.76868,-76.28427 4.76872,-76.29337 4.76013,-76.30802 4.75204,-76.3069 4.74129,-76.29845 4.7344,-76.28554 4.71173,-76.2885 4.70292,-76.29513 4.70145,-76.29357 4.69341,-76.27412 4.69352,-76.25151 4.68433,-76.24419 4.68302,-76.23153 4.67505,-76.22266 4.67414,-76.19551 4.6819,-76.17919 4.70591,-76.1789 4.72204,-76.15266 4.74284,-76.14829 4.74928,-76.14828 4.76091,-76.15144 4.7699,-76.14928 4.78289,-76.13476 4.79373,-76.13809 4.80606,-76.12824 4.81701,-76.13202 4.83302,-76.13725 4.8426))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Amphibia"
 ]
}

 The dataset includes 1732 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0311591-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pt7a2r
title: Occurrence Download

description: A dataset containing 787 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Fossil",
 "TaxonKey is Trichechidae"
 ]
}

 The dataset includes 787 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006485-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r39bgq
title: Occurrence Download

description: A dataset containing 53086025 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen, Fossil, Occurrence evidence, Living Specimen, Machine Observation)",
 "Continent is one of (Asia, Africa, North America, Europe, Antarctica, Oceania, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Sex is one of (Female, Male)",
 "Year 1000-2024"
 ]
}

 The dataset includes 53086025 records from 4252 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105423-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.12750077.v1
title: Additional file 5 of Novel bioinformatic classification system for genetic signatures identification in diffuse large B-cell lymphoma

description: Additional file 5: Table S3. Variant list
DOI: 10.6084/m9.figshare.12750083.v1
title: Additional file 7 of Novel bioinformatic classification system for genetic signatures identification in diffuse large B-cell lymphoma

description: Additional file 7: Table S4. Binary matrix of the status of one-hot encoded genetic alterations, initial defined genetic signatures, and final convergent genetic signatures
DOI: 10.6084/m9.figshare.14516626.v1
title: Additional file 1 of Genome-wide identification and transcriptional characterization of DNA methyltransferases conferring temperature-sensitive male sterility in wheat

description: Additional file 1: Table S1. List of all DMT genes in wheat. Table S2. Primer information used in this study.
DOI: 10.6084/m9.figshare.12218915
title: Additional file 1 of Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomes

description: Additional file 1.
DOI: 10.6084/m9.figshare.14516626
title: Additional file 1 of Genome-wide identification and transcriptional characterization of DNA methyltransferases conferring temperature-sensitive male sterility in wheat

description: Additional file 1: Table S1. List of all DMT genes in wheat. Table S2. Primer information used in this study.
DOI: 10.6084/m9.figshare.12750086
title: Additional file 8 of Novel bioinformatic classification system for genetic signatures identification in diffuse large B-cell lymphoma

description: Additional file 8: Table S5. Multivariate analysis including our set of four signatures and IPI score using enter method in cox proportional hazard regression model
DOI: 10.6084/m9.figshare.19565857.v1
title: Additional file 1 of EXpert consensus On Diaphragm UltraSonography in the critically ill (EXODUS): a Delphi consensus statement on the measurement of diaphragm ultrasound-derived parameters in a critical care setting

description: Additional file 1. Consensus round 1.
DOI: 10.6084/m9.figshare.12750098.v1
title: Additional file 2 of Physiological and transcriptome analysis of Poa pratensis var. anceps cv. Qinghai in response to cold stress

description: Additional file 2: Table S2. Summary statistics of the common vetch transcriptome assemblies.
DOI: 10.6084/m9.figshare.19565863.v1
title: Additional file 3 of EXpert consensus On Diaphragm UltraSonography in the critically ill (EXODUS): a Delphi consensus statement on the measurement of diaphragm ultrasound-derived parameters in a critical care setting

description: Additional file 3. Consensus round 2.
DOI: 10.6084/m9.figshare.19565821.v1
title: Additional file 3 of Transcriptomic analyses of the HPG axis-related tissues reveals potential candidate genes and regulatory pathways associated with egg production in ducks

description: Additional file 3: Table S3. GO enriched in hypothalamus, pituitary, ovary stroma, and F5 follicle membrane between HEP and LEP.
DOI: 10.6084/m9.figshare.19565827
title: Additional file 5 of Transcriptomic analyses of the HPG axis-related tissues reveals potential candidate genes and regulatory pathways associated with egg production in ducks

description: Additional file 5: Table S5. Gene expression pattern analysis.
DOI: 10.6084/m9.figshare.12750140.v1
title: Additional file 3 of MicroRNA-184 negatively regulates corneal epithelial wound healing via targeting CDC25A, CARM1, and LASP1

description: Additional file 3 Supplementary Table S3. A list of 93 GO terms of interest.
DOI: 10.25545/ngmohk/m1gsiq
title: Supplementary+Date+Table+S6.xls

description: :unav
DOI: 10.6084/m9.figshare.19565824.v1
title: Additional file 4 of Transcriptomic analyses of the HPG axis-related tissues reveals potential candidate genes and regulatory pathways associated with egg production in ducks

description: Additional file 4: Table S4. KEGG enriched in hypothalamus, pituitary, ovary stroma, and F5 follicle membrane between HEP and LEP.
DOI: 10.6084/m9.figshare.12750101
title: Additional file 3 of Physiological and transcriptome analysis of Poa pratensis var. anceps cv. Qinghai in response to cold stress

description: Additional file 3: Table S3. Functional annotations of unigenes in the NR, Swiss-Prot, PFAM, COG, GO and KEGG databases
DOI: 10.6084/m9.figshare.19565821
title: Additional file 3 of Transcriptomic analyses of the HPG axis-related tissues reveals potential candidate genes and regulatory pathways associated with egg production in ducks

description: Additional file 3: Table S3. GO enriched in hypothalamus, pituitary, ovary stroma, and F5 follicle membrane between HEP and LEP.
DOI: 10.6084/m9.figshare.19565863
title: Additional file 3 of EXpert consensus On Diaphragm UltraSonography in the critically ill (EXODUS): a Delphi consensus statement on the measurement of diaphragm ultrasound-derived parameters in a critical care setting

description: Additional file 3. Consensus round 2.
DOI: 10.5517/ccdc.csd.cc2cx15j
title: CCDC 2201687: Experimental Crystal Structure Determination

description: Related Article: Zaib ul Nisa, Musheer Ahmad, Haq Nawaz Sheikh|2024|New J.Chem.|48|3100|doi:10.1039/D3NJ05433K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cx16k
title: CCDC 2201688: Experimental Crystal Structure Determination

description: Related Article: Zaib ul Nisa, Musheer Ahmad, Haq Nawaz Sheikh|2024|New J.Chem.|48|3100|doi:10.1039/D3NJ05433K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.12219107
title: Additional file 4 of Milk exosome-derived miRNAs from water buffalo are implicated in immune response and metabolism process

description: Additional file 4. Predicted targets of significantly up-regulated miRNAs in buffalo milk exosome
DOI: 10.6084/m9.figshare.19565857
title: Additional file 1 of EXpert consensus On Diaphragm UltraSonography in the critically ill (EXODUS): a Delphi consensus statement on the measurement of diaphragm ultrasound-derived parameters in a critical care setting

description: Additional file 1. Consensus round 1.
DOI: 10.25545/ngmohk/1djooi
title: Supplementary+Date+Table+S2.xls

description: :unav
DOI: 10.6084/m9.figshare.12750101.v1
title: Additional file 3 of Physiological and transcriptome analysis of Poa pratensis var. anceps cv. Qinghai in response to cold stress

description: Additional file 3: Table S3. Functional annotations of unigenes in the NR, Swiss-Prot, PFAM, COG, GO and KEGG databases
DOI: 10.6084/m9.figshare.20090238.v1
title: Comparative pathogenesis of turkey reoviruses

description: Turkey reoviruses have been implicated in multiple disease syndromes resulting in significant economic losses to the turkey industry. It has been known for decades that turkey enteric reovirus (TERV) is involved in poult enteritis complex, but turkey arthritis reovirus (TARV), the causative agent of tenosynovitis in turkeys, emerged in 2011. In 2019, we isolated reovirus from several cases of hepatitis in turkeys and tentatively named it turkey hepatitis reovirus (THRV). The comparative pathogenesis of these viruses, and correlation with their genetic make-up (if any), is not known. In this study, we inoculated nine groups of 1-week-old turkey poults with two THRV, five TARV and two TERV via oral route. A tenth group served as a negative control. A subset of birds from each group was euthanised at 3, 5, 7, 14, 21, and 28 days post-inoculation (dpi). Tissues were collected for histology and real-time RT–PCR. All nine viruses were found to be enterotropic; the virus gene copy number in the intestine reached a peak at 5 dpi followed by a sharp decline at 7 dpi. All viruses caused a significant decline in body weight gain of birds as compared to the negative control group. Both TARV and THRV strains replicated in tendons and produced histologic lesions consistent with tenosynovitis. Hepatic lesions were produced by THRV only and the virus was re-isolated from liver and spleen of inoculated birds fulfilling Koch’s postulates. The results of this study should be helpful in facilitating diagnosis and designing future mitigation plans.
DOI: 10.6084/m9.figshare.12750137
title: Additional file 2 of MicroRNA-184 negatively regulates corneal epithelial wound healing via targeting CDC25A, CARM1, and LASP1

description: Additional file 2 Supplementary Table S2. GO enrichment analysis of 104 differentially downregulated genes, which are also putative target genes of miR-184.
DOI: 10.6084/m9.figshare.12750140
title: Additional file 3 of MicroRNA-184 negatively regulates corneal epithelial wound healing via targeting CDC25A, CARM1, and LASP1

description: Additional file 3 Supplementary Table S3. A list of 93 GO terms of interest.
DOI: 10.6084/m9.figshare.16944555
title: Additional file 7 of Genome-wide analysis of Dof transcription factors and their response to cold stress in rice (Oryza sativa L.)

description: Additional file 7
DOI: 10.25545/ngmohk/hea8p4
title: Supplementary+Date+Table+S3.xls

description: :unav
DOI: 10.6084/m9.figshare.12750134.v1
title: Additional file 1 of MicroRNA-184 negatively regulates corneal epithelial wound healing via targeting CDC25A, CARM1, and LASP1

description: Additional file 1 Supplementary Table S1. siRNA sequences of CDC25A, LASP1, CARM1, and negative control.
DOI: 10.6084/m9.figshare.12750137.v1
title: Additional file 2 of MicroRNA-184 negatively regulates corneal epithelial wound healing via targeting CDC25A, CARM1, and LASP1

description: Additional file 2 Supplementary Table S2. GO enrichment analysis of 104 differentially downregulated genes, which are also putative target genes of miR-184.
DOI: 10.25545/ngmohk
title: Supplementary data files accompanying “Geochronology and geochemistry of zircon from Early to Middle Devonian granitic plutonic and volcanic rocks from the Cashes Ledge igneous suite, central Gulf of Maine, USA” (Kuiper et al., 2023).

description: These seven files are supplementary data that accompanies the publication for which the full citation is given below. Abstract: New zircon U–Pb, trace element, and Lu–Hf laser ablation inductively coupled mass spectrometry (LA-ICPMS) data are presented for five Early to Middle Devonian granitic and felsic volcanic rocks from the Cashes Ledge igneous suite, central Gulf of Maine, USA. These samples were previously analyzed by U–Pb LA-ICP-MS and whole-rock geochemical methods and the new data generally corroborate the earlier results. Coarse-grained alkali-feldspar granite from northwest of the Fundy magnetic anomaly, the interpreted fault boundary in the offshore between Gondwanan microcontinents Ganderia to the northwest and Avalonia to the southeast, yielded a crystallization age of 414 ± 2 Ma. Southeast of the inferred fault, crystallization ages are 385 ± 3 Ma and 386 ± 3 Ma for two crystal tuff samples near the fault, 403 ± 3 Ma for an alkali-feldspar granite ~50 km southeast of the fault, and 399 ± 5 Ma for syenogranite ~25 km southeast of the fault, which also yielded inherited grains at ~1.3 Ga and between 613 ± 15 Ma and 558 ± 9 Ma. Lu–Hf LA-ICP-MS data for zircon retaining igneous crystallization ages have εHf(t) between 2.9 and 13.1 and model ages based on felsic sources between 0.52 and 1.04 Ga, reflecting a mix of late Mesoproterozoic (Avalonian?) basement and primitive melt, possibly in an extensional setting. Zircon Nb/ Hf ratios generally greater than 0.001 indicate a predominately within-plate/anorogenic/rift setting, consistent with their whole-rock chemistry. U/Yb-Nb/Yb and U/Yb-Hf tectonic setting discrimination diagrams show ocean island to continental arc signatures, with a stronger continental arc signature for the syenogranite. Most zircon grains have Eu/Eu* values less than 0.1, indicating a crustal thickness of ~30 km or less at the time of their crystallization.
DOI: 10.25545/ngmohk/tmm6o3
title: Supplementary+Data+File+S1.pdf

description: :unav
DOI: 10.6084/m9.figshare.20090238
title: Comparative pathogenesis of turkey reoviruses

description: Turkey reoviruses have been implicated in multiple disease syndromes resulting in significant economic losses to the turkey industry. It has been known for decades that turkey enteric reovirus (TERV) is involved in poult enteritis complex, but turkey arthritis reovirus (TARV), the causative agent of tenosynovitis in turkeys, emerged in 2011. In 2019, we isolated reovirus from several cases of hepatitis in turkeys and tentatively named it turkey hepatitis reovirus (THRV). The comparative pathogenesis of these viruses, and correlation with their genetic make-up (if any), is not known. In this study, we inoculated nine groups of 1-week-old turkey poults with two THRV, five TARV and two TERV via oral route. A tenth group served as a negative control. A subset of birds from each group was euthanised at 3, 5, 7, 14, 21, and 28 days post-inoculation (dpi). Tissues were collected for histology and real-time RT–PCR. All nine viruses were found to be enterotropic; the virus gene copy number in the intestine reached a peak at 5 dpi followed by a sharp decline at 7 dpi. All viruses caused a significant decline in body weight gain of birds as compared to the negative control group. Both TARV and THRV strains replicated in tendons and produced histologic lesions consistent with tenosynovitis. Hepatic lesions were produced by THRV only and the virus was re-isolated from liver and spleen of inoculated birds fulfilling Koch’s postulates. The results of this study should be helpful in facilitating diagnosis and designing future mitigation plans.
DOI: 10.6084/m9.figshare.16944558.v1
title: Additional file 8 of Genome-wide analysis of Dof transcription factors and their response to cold stress in rice (Oryza sativa L.)

description: Additional file 8
DOI: 10.6084/m9.figshare.16944552.v1
title: Additional file 6 of Genome-wide analysis of Dof transcription factors and their response to cold stress in rice (Oryza sativa L.)

description: Additional file 6
DOI: 10.6084/m9.figshare.16944555.v1
title: Additional file 7 of Genome-wide analysis of Dof transcription factors and their response to cold stress in rice (Oryza sativa L.)

description: Additional file 7
DOI: 10.6084/m9.figshare.20353513
title: Additional file 1 of Homologous recombination deficiency (HRD) score in aggressive prostatic adenocarcinoma with or without intraductal carcinoma of the prostate (IDC-P)

description: Additional file 1: Supplementary Table 1. Sheet 1: 733-gene Next Generation Sequencing (NGS) panel gene list. Sheet 2: 156-gene NGS panel gene list. Sheet 3: Annotation of homologous recombination repair (HRR) genes used in this study.
DOI: 10.6084/m9.figshare.20353513.v1
title: Additional file 1 of Homologous recombination deficiency (HRD) score in aggressive prostatic adenocarcinoma with or without intraductal carcinoma of the prostate (IDC-P)

description: Additional file 1: Supplementary Table 1. Sheet 1: 733-gene Next Generation Sequencing (NGS) panel gene list. Sheet 2: 156-gene NGS panel gene list. Sheet 3: Annotation of homologous recombination repair (HRR) genes used in this study.
DOI: 10.6084/m9.figshare.18517632
title: Additional file 1 of Online engagement and performance on formative assessments mediate the relationship between attendance and course performance

description: Additional file 1. Supplementary Material.
DOI: 10.6084/m9.figshare.22705847.v1
title: Additional file 2 of A metabolic perspective of selection for fruit quality related to apple domestication and improvement

description: Additional file 2: Table S1. The list of collected 292 varieties. Table S2. Classification of 292 apple accessions. Table S3. Statistical results of heredity and variation. Table S4. Scheduled MRM transitions for widely targeted metabolite analysis in apple flesh. Table S5. Different metabolites identified between M. sieversii and heirloom groups. Table S6. Different metabolites identified between heirloom and cultivar groups. Table S7. Different metabolites identified among “Ralls Janet” and “Golden Delicious” series. Table S8. Different metabolites identified between low- and high-weight groups. Table S9. All significant SNPs for all apple metabolites Table S10. Candidate genes for tannins, lipids, SA, and ABA identified by GWAS. Table S11. Primers used in this study.
DOI: 10.6084/m9.figshare.12750588
title: Viscosity changes of UHMWPE/LP system from Particle morphology, structure and properties of nascent ultra-high molecular weight polyethylene

description: Viscosity changes of UHMWPE/LP system
DOI: 10.6084/m9.figshare.12750591.v1
title: Optical photographs from Particle morphology, structure and properties of nascent ultra-high molecular weight polyethylene

description: Optical photographs of nascent UHMWPE in LP at different temperatures
DOI: 10.6084/m9.figshare.12750594
title: The mechanism of UHMWPE particle growth from Particle morphology, structure and properties of nascent ultra-high molecular weight polyethylene

description: The schematic diagrams on the mechanism of UHMWPE particle growth