cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/0sp-c4m-h16
title: Lamium purpureum L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/zpj-9hm-pfh
title: Thymus munbyanus subsp. munbyanus

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/8th-xzr-vyl
title: Lavandula canariensis subsp. canariensis

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/ycr-3an-jjw
title: Teucrium polium L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.15468/dl.ukk7su
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amphilius zairensis Skelton, 1986"
 ]
}

 The dataset includes 70 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108391-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/5yx-ad9-62e
title: Sideritis chamaedryfolia Cav.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/vb8-xlm-dms
title: Ajuga laxmannii (L.) Benth.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/ev5-xpb-ze1
title: Marrubium peregrinum L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/p1g-1b7-ahr
title: Nepeta incana Willd.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.1594/pangaea.980635
title: Downward spectral solar irradiance as measured in different depths under sea ice (transmitted irradiance) at station PS122/4_45-149 on 2020-07-04, survey 2, version 2.0

description: Transmitted solar irradiance was measured using an ACC (Advanced-Cosine-Collector) RAMSES hyper-spectral radiometer (TriOS) mounted on the ROV during the MOSAiC expedition between November 2019 and September 2020. All times are given in Universal Coordinated Time (UTC).
DOI: 10.3535/8sw-geh-7xc
title: Hyptis Jacq.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/w60-zst-3zv
title: Coleus strobilifer (Roxb.) A.J.Paton

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/znh-tt2-va1
title: Elsholtzia ciliata (Thunb.) Hyl.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/a0v-hwp-rte
title: Nepeta nuda subsp. nuda

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.15468/dl.rb7ms4
title: Occurrence Download

description: A dataset containing 23884 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "OccurrenceStatus is Present",
 "TaxonKey is Sternula nereis Gould, 1843"
 ]
}

 The dataset includes 23884 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108390-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/d2t-rwj-vfs
title: Mentha cervina L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.15468/dl.54uyeq
title: Occurrence Download

description: A dataset containing 2766 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Soldanella pusilla Baumg."
 ]
}

 The dataset includes 2766 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217581-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ze74z
title: Occurrence Download

description: A dataset containing 388 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Classic localities of cave dwelling Arthropoda (excl. Coleoptera) from the Western Balkans"
 ]
}

 The dataset includes 388 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0273114-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ndckn3
title: Occurrence Download

description: A dataset containing 1703 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Celeus torquatus (Boddaert, 1783)"
 ]
}

 The dataset includes 1703 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010109-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zwuptp
title: Occurrence Download

description: A dataset containing 7084 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Carcharhiniformes"
 ]
}

 The dataset includes 7084 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043624-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.es9twt
title: Occurrence Download

description: A dataset containing 242 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-105.7 23.94,-105 23.94,-105 25.2,-105.7 25.2,-105.7 23.94))",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Actinopterygii"
 ]
}

 The dataset includes 242 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217567-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b99paj
title: Occurrence Download

description: A dataset containing 179 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Lactuca raddeana Maxim."
 ]
}

 The dataset includes 179 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0288181-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z57yuw
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phylloicus bromeliarum F Mueller, 1880"
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0281489-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ptk3ad
title: Occurrence Download

description: A dataset containing 325 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "License is CC0 1.0",
 "License is CC-BY 4.0",
 "License is CC-BY-NC 4.0"
 ]
 },
 "Geometry POLYGON((-99.25323 25.24221,-98.30017 25.24718,-98.3035 26.12381,-99.25323 26.12338,-99.25323 25.24221))",
 "Year 2017-2018"
 ]
}

 The dataset includes 325 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014481-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zprzzf
title: Occurrence Download

description: A dataset containing 137124 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solidago canadensis L."
 ]
}

 The dataset includes 137124 records from 557 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217585-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6ub4w8
title: Occurrence Download

description: A dataset containing 1687 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dosidicus gigas (D'Orbigny, 1835)"
 ]
}

 The dataset includes 1687 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292344-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gx32pe
title: Occurrence Download

description: A dataset containing 1364 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bidens tripartita L.",
 "MediaType is Image",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 1364 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000605-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u47lwn
title: Occurrence Download

description: A dataset containing 37649 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "Year 1950-2018",
 "Geometry POLYGON ((-28.4765625 24.66138986480461, -26.015625 67.941650035336, 42.890625 72.75572735022381, 42.890625 24.66138986480461, -28.4765625 24.66138986480461))",
 "HasCoordinate is true",
 "TaxonKey is Anguis fragilis Linnaeus, 1758",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 37649 records from 202 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010111-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8tu724
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aconitum taipeicum Hand.-Mazz."
 ]
}

 The dataset includes 38 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050908-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xxrcna
title: Occurrence Download

description: A dataset containing 151204 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ardea cinerea Linnaeus, 1758"
 ]
}

 The dataset includes 151204 records from 417 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0251683-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xycvwj
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Psittacula krameri (Scopoli, 1769)"
 ]
}

 The dataset includes 123 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0261887-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.caqhzs
title: Occurrence Download

description: A dataset containing 85311 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "StateProvince is alberta",
 "TaxonKey is Lepidoptera"
 ]
}

 The dataset includes 85311 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010111-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y2yn49
title: Occurrence Download

description: A dataset containing 33410 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Spain",
 "Country is Portugal"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Quercus pyrenaica Willd."
 ]
}

 The dataset includes 33410 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001530-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bza8j8
title: Occurrence Download

description: A dataset containing 52055 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is PaDIL Bee records"
 ]
}

 The dataset includes 52055 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140011-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hv4bnq
title: Occurrence Download

description: A dataset containing 3673 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Iriartella setigera (Mart.) H.Wendl."
 ]
}

 The dataset includes 3673 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0251685-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g7ucfh
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Description of two new Quadrastichus (Hymenoptera: Eulophidae) reared from Litchiomyia chinensis (Diptera: Cecidomyiidae) on commercial lychee (Litchi chinensis; Sapindaceae) in Taiwan"
 ]
}

 The dataset includes 16 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033949-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0wwtrd
title: Occurrence Download

description: A dataset containing 241 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is CNIN/Tipos Odonata"
 ]
}

 The dataset includes 241 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010111-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s3tqzw
title: Occurrence Download

description: A dataset containing 509 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Diospyros kaki Thunb."
 ]
}

 The dataset includes 509 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0273119-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9k5aka
title: Occurrence Download

description: A dataset containing 65397 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Diplotaxis tenuifolia (L.) DC.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 65397 records from 655 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014389-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pjqsvs
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypleurochilus springeri Randall, 1966"
 ]
}

 The dataset includes 107 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059599-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4qvswq
title: Occurrence Download

description: A dataset containing 20852397 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Mexico"
 ]
}

 The dataset includes 20852397 records from 3233 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292345-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zdpd5j
title: Occurrence Download

description: A dataset containing 15051 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ammospermophilus Merriam, 1892"
 ]
}

 The dataset includes 15051 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105640-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.63uhwc
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acanthephyra tenuipes (Spence Bate, 1888)"
 ]
}

 The dataset includes 7 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111581-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cejwx7
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Callionymus leucopoecilus Fricke & Lee, 1993"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237605-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xchd3b
title: Occurrence Download

description: A dataset containing 1522 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Gyrinophilus porphyriticus (Green, 1827)"
 ]
}

 The dataset includes 1522 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105653-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10495131
title: READRetro_data

description: READRetro_data is for READRetro (https://github.com/SeulLee05/READRetro)All files including data.sh should be located in READRetro/READRetro_data/(here) before running data.sh 

The directory structure of the Zenodo data should be follows after running sh data.sh:

READRetro_data

    ├── data.sh

    ├── data

    │   ├── model_train_data

    │   └── multistep_data

    ├── model

    │   ├── bionavi

    │   ├── g2s

    │   │   └── saved_models

    │   ├── megan

    │   └── retroformer

    │       └── saved_models

    ├── result

    └── scripts

 

Place the READRetro_data into the READRetro directory (i.e., READRetro/READRetro_data) and run `sh data.sh` in READRetro_data to set up the data.

 

Ensure the data is correctly located in READRetro. Verify the following:

- `READRetro/retroformer/saved_models` should match `READRetro_data/model/retroformer/saved_models`

- `READRetro/g2s/saved_models` should match `READRetro_data/model/g2s/saved_models`

- `READRetro/data` should match `READRetro_data/data/multistep_data`

- `READRetro/result` should match `READRetro_data/result`

- `READRetro/scripts` should match `READRetro_data/scripts`

 

The directories `READRetro_data/model/bionavi`, `READRetro_data/model/megan`, and `READRetro_data/model_train_data` are essential for reproducing the manuscript*ckpts.tar.gz has been added. It consists of checkpoints for MHN-React and GraphRetro, which were used in a single-step retrosynthesis evaluation. (v2)

*parameter_optimization.zip has been added. It consists of checkpoints for Retroformer and Graph2SMILES, which were used to construct the ensemble models applied to multi-step retrosynthesis in parameter optimization (model_1600000.pt: Retroformer layout 16, model.72000_35.pt: Graph2SMILES layout 16). (v3)
DOI: 10.5281/zenodo.11485641
title: READRetro_data

description: READRetro_data is for READRetro (https://github.com/SeulLee05/READRetro)All files including data.sh should be located in READRetro/READRetro_data/(here) before running data.sh 

The directory structure of the Zenodo data should be follows after running sh data.sh:

READRetro_data

    ├── data.sh

    ├── data

    │   ├── model_train_data

    │   └── multistep_data

    ├── model

    │   ├── bionavi

    │   ├── g2s

    │   │   └── saved_models

    │   ├── megan

    │   └── retroformer

    │       └── saved_models

    ├── result

    └── scripts

 

Place the READRetro_data into the READRetro directory (i.e., READRetro/READRetro_data) and run `sh data.sh` in READRetro_data to set up the data.

 

Ensure the data is correctly located in READRetro. Verify the following:

- `READRetro/retroformer/saved_models` should match `READRetro_data/model/retroformer/saved_models`

- `READRetro/g2s/saved_models` should match `READRetro_data/model/g2s/saved_models`

- `READRetro/data` should match `READRetro_data/data/multistep_data`

- `READRetro/result` should match `READRetro_data/result`

- `READRetro/scripts` should match `READRetro_data/scripts`

 

The directories `READRetro_data/model/bionavi`, `READRetro_data/model/megan`, and `READRetro_data/model_train_data` are essential for reproducing the manuscript*ckpts.tar.gz has been added. It consists of checkpoints for MHN-React and GraphRetro, which were used in a single-step retrosynthesis evaluation.
DOI: 10.15468/dl.6n7zau
title: Occurrence Download

description: A dataset containing 5193 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paraeuchaeta antarctica (Giesbrecht, 1902)"
 ]
}

 The dataset includes 5193 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127841-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5cw7zn
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Glauconycteris egeria Thomas, 1913"
 ]
}

 The dataset includes 24 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105654-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.