cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.3jx6pb
title: Occurrence Download

description: A dataset containing 42587 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aeromonadaceae",
 "Year 1000-2024"
 ]
}

 The dataset includes 42587 records from 460 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006345-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tu75fz
title: Occurrence Download

description: A dataset containing 660 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Libythea myrrha"
 ]
}

 The dataset includes 660 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003965-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.82294/dvnevt4ep
title: Citas testimoniales: Gráficos Sankye. Territorio: Todos. Sector: Todos. Año: 2025

description: Triangulación y agrupación de códigos: Maestros con aulas transformadas y transformadoras 2025. De acuerdo con las tendencias identificadas en cómo se configuran y adquieren sentido las tendencias discursivas de los educadores artísticos, estos gráficos presentan la consolidación de las acciones observadas mediante el protocolo de ejes medulares durante el año 2025 en los territorios atendidos. Asimismo, se incluye una sumatoria general que integra todas las entrevistas realizadas. También, se puede encontrar los gráficos Sankey discriminados por sector Educación y Cultural.
PD: en el año 2025 se presenta sol el gráfico Sankey de Maestros con aulas transformadas y transformadoras, como una muestra de la integración de estos códigos o unidades de análisis.
DOI: 10.5281/zenodo.18406180
title: Dados de survey sobre o uso de metodologias ativas em cursos superiores de Gestão / Survey data on active learning implementation in evening business programs

description: Descrição

Este conjunto de dados reúne respostas de um survey aplicado a estudantes e professores de cursos superiores de Gestão, com o objetivo de analisar o uso, a frequência e as percepções sobre metodologias ativas de ensino. O instrumento contemplou diferentes abordagens pedagógicas, incluindo aprendizagem baseada em projetos, método de caso, sala de aula invertida, simulações empresariais, jogos de negócios, gamificação, aprendizagem baseada em equipes, instrução por pares e metodologias colaborativas e reflexivas.

Os dados foram coletados por meio de questionário estruturado e organizados em planilha eletrônica. As respostas encontram-se anonimizadas e não permitem a identificação individual dos participantes. O conjunto de dados foi utilizado como base empírica para um artigo científico submetido a periódico internacional na área de educação em negócios, com foco na implementação de metodologias ativas em cursos superiores de Gestão.

————————DESCRIPTION

This dataset contains responses from a survey administered to students and faculty members in higher education management programs, aiming to examine the use, frequency, and perceptions of active learning methodologies. The instrument covered a range of pedagogical approaches, including project-based learning, case method, flipped classroom, business simulations, business games, gamification, team-based learning, peer instruction, and collaborative and reflective teaching methodologies.

Data were collected through a structured questionnaire and organized in a spreadsheet format. All responses are anonymized and do not allow individual identification of participants. The dataset serves as the empirical basis for a research article submitted to an international journal in the field of business education, focusing on the implementation of active learning methodologies in higher education management courses.
DOI: 10.15468/dl.q4sat3
title: Occurrence Download

description: A dataset containing 560 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Calanthe alpina"
 ]
}

 The dataset includes 560 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003966-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.r2280gbm6
title: Photoenzymatic asymmetric incorporation of fluorinated motifs into olefins

description: Enzymes capable of assimilating fluorinated feedstocks are scarce, which
 poses a challenge for the biosynthesis of fluorinated compounds used in
 pharmaceuticals, agrochemicals, and materials. We develop a photoenzymatic
 hydrofluoroalkylation that adeptly integrates fluorinated motifs into
 olefins. The photoinduced promiscuity of flavin-dependent ene-reductases
 enables generation of carbon-centered radicals from iodinated
 fluoroalkanes, which are directed by the photoenzyme to engage
 enantioselectively with olefins. This approach facilitates stereocontrol
 through interaction between a singular fluorinated unit and the enzyme,
 securing high enantioselectivity at β-, γ-, or δ-positions of fluorinated
 groups via enzymatic hydrogen atom transfer, a process notably challenging
 with conventional chemocatalysis. This work advances enzymatic strategies
 for integrating fluorinated chemical feedstocks and opens new avenues for
 asymmetric synthesis of fluorinated compounds.
description: # Photoenzymatic Asymmetric Incorporation of Fluorinated Motifs into
 Olefins
 [https://doi.org/10.5061/dryad.r2280gbm6](https://doi.org/10.5061/dryad.r2280gbm6) This dataset supports the research published in "Photoenzymatic Asymmetric Incorporation of Fluorinated Motifs into Olefins" and contains all the necessary files for molecular docking and cluster modeling as described in the article and Supplementary Information. Molecular docking was completed using Autodock Vina, and cluster modeling was performed using Gaussian 16. ## Description of the data and file structure ### Molecular Docking * **3tx9.pdbqt** * Description: This file contains the pdbqt format of the enzyme used in the molecular docking. * **CHF2CH2I.pdbqt** * Description: This file represents the pdbqt format of the ligand. * **CHF2CH2I_out.pdbqt** * Description: Output file showing the docked results. * **config.txt** * Description: Configuration file used to set up the molecular docking parameters in Autodock Vina. ### Cluster Model * **Supplementary_Data-Cartesian_coordinates** * Description: Contains all molecular XYZ coordinates necessary for the cluster modeling. This file is referenced in the article's main text. ## Usage Notes To replicate the analyses reported in the paper, users will need to: 1. Download the data files from this repository. 2. Use the configurations and parameters as specified in the `config.txt` for molecular docking. 3. Combine the molecular coordinates with the computational methods described in the main text for cluster modeling. ## Software Requirements * **Autodock Vina**: Used for molecular docking. * **Gaussian 16**: Used for cluster modeling. Ensure you have the correct version of Gaussian as specified in the study.
DOI: 10.5281/zenodo.18098612
title: eDNA dataset: The trajectory of tree death determines the fungal communities in Central Europe

description: This dataset contains raw paired-end Illumina sequencing reads from an eDNA metabarcoding study. All samples were pooled into a single forward (R1) and reverse (R2) FASTQ file. Individual samples can be separated based on primer sequences provided in "sample_barcodes.txt". No demultiplexing or quality filtering has been performed.

Data were collected from 60 Picea abies logs and standing dead trees in 2021 at Boubín primeval forest National Nature Reserve (48.978°N, 13.809°E). Sample descriptions and metadata are provided in "metadata.xlsx".

The dataset is associated with a manuscript in preparation that describes the study design, sampling, and analysis.

 Monika Kolényová, Jan Běťák, Daniel Dvořák, Jacob Heilmann-Clausen, Tomáš Přívětivý, Linda Ručková, Pavel Šamonil, Michal Tomšovský, Lucie Zíbarová, Petr Baldrian: The trajectory of tree death determines the fungal communities in Central Europe
DOI: 10.5061/dryad.2z34tmptx
title: Data from: Efficient carbon recycling between calcification and photosynthesis in red coralline algae

description: Red coralline algae create abundant, spatially vast, reef ecosystems
 throughout our coastal oceans with significant ecosystem service
 provision, but our understanding of their basic physiology is lacking. In
 particular, the balance and linkages between carbon-producing and
 carbon-sequestering processes remain poorly constrained, with significant
 implications understanding their role in carbon sequestration and storage.
 Using a dual radioisotope tracing, we provide evidence for coupling
 between photosynthesis (which requires CO2) and calcification (which
 releases CO2) in the red coralline alga Boreolithothamnion soriferum
 (previously Lithothamnion soriferum) – a marine ecosystem engineer widely
 distributed across Atlantic mid-high latitudes. Of the sequestered HCO3-,
 38±22% was deposited as carbonate skeleton whilst 39±14% was incorporated
 into organic matter via photosynthesis. Only 38±2% of the sequestered
 HCO3- was transformed into CO2, and almost 40% of that was internally
 recycled as photosynthetic substrate, reducing the net release of carbon
 to 23±3% of the total uptake. Calcification rate was strongly dependent on
 photosynthetic substrate production, supporting the presence of
 photosynthetically-enhanced calcification. The efficient carbon-recycling
 physiology reported here suggests that calcifying algae may not be as
 important in marine system CO2 release as is currently assumed, supporting
 a reassessment of their role in blue carbon accounting.
description: These data are from an algal incubation dual radioisotope tracers
 (<sup>14</sup>C and <sup>45</sup>Ca) experiment to
 resolve the the relationship between calcification and photosynthesis in
 the red coralline alga <em>Boreolithothamnion soriferum</em>,
 identifying the inorganic carbon source and the degree of
 CO<sub>2</sub> recycling, and estimating the organismal-scale
 ratio between released CO<sub>2</sub> and precipitated
 CO<sub>3</sub><sup>2-</sup> (ψ).
description: # Efficient carbon recycling between calcification and photosynthesis in
 red coralline algae
 [https://doi.org/10.5061/dryad.2z34tmptx](https://doi.org/10.5061/dryad.2z34tmptx) ## Description of the data and file structure The incubation experiment used the red coralline alga species Boreolithothamnion glaciale. There were two treatments - control and +EZ (= ethoxyzolamide, a membrane-permeable internal+external carbonic anhydrase inhibitor). Data were collected after 0.5, 1.5, 3 and 5 hours of incubation from each treatment. N = 8 per treatment per time point. There are four tabs in the data file, related to: 1. Oxygen production rate (related paper Figure 1a) 2. 45Ca incorporation amount and rate, inorganic 14C incorporation amount and rate (related paper Figure 1b-g) 3. Organic 14C fixation amount and rate (related paper Figure 1h-i) 4.  Organismal-scale ratio between released CO2 and precipitated CO32- (ψ) (related paper Table 1) Units are provided in the data file.  Abbreviations:  * EZ: ethoxyzolamide * DM: dry mass (of algae)
DOI: 10.5281/zenodo.18098611
title: eDNA dataset: The trajectory of tree death determines the fungal communities in Central Europe

description: This dataset contains raw paired-end Illumina sequencing reads from an eDNA metabarcoding study. All samples were pooled into a single forward (R1) and reverse (R2) FASTQ file. Individual samples can be separated based on primer sequences provided in "sample_barcodes.txt". No demultiplexing or quality filtering has been performed.

Data were collected from 60 Picea abies logs and standing dead trees in 2021 at Boubín primeval forest National Nature Reserve (48.978°N, 13.809°E). Sample descriptions and metadata are provided in "metadata.xlsx".

The dataset is associated with a manuscript in preparation that describes the study design, sampling, and analysis.

 Monika Kolényová, Jan Běťák, Daniel Dvořák, Jacob Heilmann-Clausen, Tomáš Přívětivý, Linda Ručková, Pavel Šamonil, Michal Tomšovský, Lucie Zíbarová, Petr Baldrian: The trajectory of tree death determines the fungal communities in Central Europe
DOI: 10.5061/dryad.c59zw3rgm
title: Data from: Piper globirhachis, a segregate species across the Marañon River Valley and the resurrection of Pleiostachyopiper Trel. as a distinct subgenus of neotropical Piper

description: Piper globirhachis, a new species from northwestern Amazon, is described
 and illustrated. It occurs across the Marañon River Valley from its close
 relative P. nudilimbum C. DC. with which it has been confounded for ca.
 100 years. Piper globirhachis differs morphologically from P. nudilimbum
 in having ovate to long–ovate leaf blades, and globose inflorescences, vs.
 elliptic leaves, and elongate inflorescences in P. nudilimbum. These
 species also differ in geographic distribution and ecological niche. A
 molecular phylogeny based on 135 ITS sequences (125 from Neotropical Piper
 species and 5 Asian Piper species) enabled the species boundary test
 (Poisson-tree-processes, PTP) corroborating that these are distinct
 species. Furthermore, these two species formed a well-supported clade
 sister to subgenus Oxodium (=Schilleria). This phylogeny highlights the
 importance of allopatric speciation in Piper and provides evidence for the
 resurrection of Pleiostachyopiper as a subgenus of Neotropical Piper. An
 identification key for the subgenera of Neotropical Piper is provided
description: We extracted DNA from herbarium specimens using the DNAeasy plant
 mini kit (Qiagen, Valencia, California). The ITS region was amplified
 using one of two pairs of primers ITS5-ITS4, or LEU1-ITS4 (Baldwin 1992).
 Sequencing was contracted with GenCore (Universidad de los Andes, Bogotá,
 Colombia). The resulting sequences were manually aligned against
 previously obtained alignments (Jaramillo et al. 2008). We selected 135
 ITS sequences from the large alignment to portray here. Five sequences
 from <em>Piper</em> species from Asia and the South Pacific
 were used as outgroups. A total of 125 species (130 sequences) of
 Neotropical <em>Piper</em>, comprising representatives of all
 major clades, were used to identify the relationships of <em>P.
 nudilimbum</em> and the new segregate.
description: # Data from: Piper globirhachis, a segregate species across the Marañon
 River Valley and the resurrection of Pleiostachyopiper Trel. as a distinct
 subgenus of neotropical Piper Files list found in this folder:  1.
 PIPER_pleistochyo.phy 2. Lista_especeis_Pleiostachyopiper.xlsx Files
 details PIPER_pleistochyo.phy - this file can be opened with the Mesquite
 program (available at
 [www.mesquiteproject.org/](http://www.mesquiteproject.org/) or other
 sequence view programs. Here you will find all the sequences used for
 analisys phylogenetics. Lista_especeis_Pleiostachyopiper.xlsx - this file
 shows the sheet named "all_species" shows the data of all
 species used for our phylogenetic analysis according to the ten named
 "specie"; "name_species";
 "species_exicated"; "Author"; "Collector";
 "Collection #""; "ITS Genbank";
 "Country"; "Collection". Likewise, the sheet
 "only_Pleiostachyopiper" simply shows the Pleiostachyopiper
 species together with their GenBank codes.
DOI: 10.6084/m9.figshare.30968434
title: <b>Partial recovery of seed dispersal roles for a megafaunal fruit after rhino reintroduction in Asia’s Terai Arc Landscape</b>

description: This dataset documents the role of greater one-horned rhinos (<i>Rhinoceros unicornis</i>) in seed dispersal of the megafaunal-syndrome tree <i>Mallotus nudiflorus</i> in Nepal’s Terai landscape. Data include seed removal events, fruit and seed measurements, and germination rates across sites with rhinos and sites without rhinos for 200–400 years. Seed dispersal effectiveness (SDE) was calculated by combining quantity (fruits consumed) and quality (germination success) of dispersal. The dataset highlights how rhino reintroduction partially restores seed dispersal functions and the importance of sufficient rhino densities for ecosystem recovery.
DOI: 10.6084/m9.figshare.30968434.v1
title: <b>Partial recovery of seed dispersal roles for a megafaunal fruit after rhino reintroduction in Asia’s Terai Arc Landscape</b>

description: This dataset documents the role of greater one-horned rhinos (<i>Rhinoceros unicornis</i>) in seed dispersal of the megafaunal-syndrome tree <i>Mallotus nudiflorus</i> in Nepal’s Terai landscape. Data include seed removal events, fruit and seed measurements, and germination rates across sites with rhinos and sites without rhinos for 200–400 years. Seed dispersal effectiveness (SDE) was calculated by combining quantity (fruits consumed) and quality (germination success) of dispersal. The dataset highlights how rhino reintroduction partially restores seed dispersal functions and the importance of sufficient rhino densities for ecosystem recovery.
DOI: 10.15468/dl.du9zqj
title: Occurrence Download

description: A dataset containing 2520 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Deudorix epijarbas"
 ]
}

 The dataset includes 2520 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003967-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.kh18932fm
title: Human activities data in Wolong National Nature Reserve

description: Wolong National Nature Reserve (hereafter Wolong) is an internationally
 renowned giant panda (Ailuropoda melanoleuca) reserve. Meanwhile, the
 reserve is also a popular tourist destination in Giant Panda National
 Park. It encompasses two major towns, Wolong and Gengda, home to
 approximately 5,000 residents. Agriculture, tourist economy, and livestock
 grazing remain important income sources for the residents. Here, we
 combine ongoing survey data on human activity areas in Wolong and make two
 layers of major human activities in Wolong. The two datasets are human
 pressure and livestock grazing. Among them, the human pressure layer
 combines roads and settlement data. We use this dataset to reflect the
 extent of human activities in Wolong and as an important indicator to
 assess its interference with wildlife.
description: # Human Activities Data in Wolong National Nature Reserve
 [https://doi.org/10.5061/dryad.kh18932fm](https://doi.org/10.5061/dryad.kh18932fm) This dataset is human activities in Wolong National Nature Reserve (hereafter Wolong), including a human pressure layer and a livestock grazing layer. We use these two datasets to reflect the human activity areas in Wolong. ## Description of the data and file structure The human pressure factor is formed by integrating road points and residential points. Road points are derived from placing points every 1,000 m on major roads. The residential points are derived from the GPS data we collected from Wolong in 2016, and also through data we obtained during surveys in Wolong. In addition, we used Google Earth to align the residential points. The livestock grazing points were extracted from the 4th National Giant Panda Survey. Furthermore, we also used data obtained during surveys in Wolong to compare the livestock grazing distribution points to ensure the range was as accurate as possible. The production methods are all Euclidean distance from the grid to points calculated by ArcGIS 10.8. We resampled each layer at a 30 m resolution and saved it in ASC format. Thus, in the files we uploaded, a file called Human pressure.asc for the human pressure layer, and a file called Livestock grazing.asc for the livestock grazing layer. The reference coordinate system of both files is WGS_1984_UTM_Zone_48N. ## Code/Software Data production mainly relies on ArcGIS 10.8, and both ASC files can also be opened with ArcGIS 10.8.
DOI: 10.5061/dryad.wh70rxww5
title: Data from: Phylogenomic analyses of the Cucujiformia

description: The Cucujiformia, with remarkable morphological, ecological, and
 behavioral diversity, is the most evolutionarily successful group within
 Coleoptera. However, the phylogenetic relationships among superfamilies
 within Cucujiformia remain elusive. To address the issues, we conducted a
 transcriptome-based macro-evolutionary study of this lineage. We sequenced
 the genomes and transcriptomes of three species from the superfamily
 Curculionoidea (two from Curculionidae and one from Brentidae), and
 obtained a dataset of more than 569,990 amino acid alignments from 143
 species of Cucujiformia. With the most complete collection of
 whole-genomes and transcriptomes so far, we compared the performance of
 different data matrices with universal-single-copy orthologs (USCO). The
 resultant trees based on different datasets were consistent for the
 majority of deep nodes. Two USCO amino acid matrices (i.e., USCO75 and
 USCO750-abs80) provided well-resolved topology. The analyses confirm that
 old Cucujoidea sensu is a non-monophyletic group, consisting of
 Erotyloidea, Nitiduloidea and Cucujoidea sensu. Moreover, Erotyloidea is
 the early-diverging group in Cucujoidea sensu, followed by the clade
 Nitiduloidea. The preferred topologies supported a “basal” split of
 Coccinelloidea from the remaining superfamilies, and Cleroidea formed the
 second splitting group. The following phylogeny was supported at the
 superfamily level in Cucujiformia: (Coccinelloidea, (Cleroidea,
 ((Lymexyloidea, Tenebrionoidea), (Erotyloidea, (Nitiduloidea, (Cucujoidea,
 (Chrysomeloidea, Curculionoidea))))))). Our comprehensive analyses
 recovered well-resolved higher-level phylogenetic relationships within the
 Cucujiformia, providing a stable framework for comprehending its
 evolutionary history.
description: # Data from: Phylogenomic analyses of the Cucujiformia
 [https://doi.org/10.5061/dryad.wh70rxww5](https://doi.org/10.5061/dryad.wh70rxww5) The dataset includes original PCGs, supermatrices, and resultant files in the phylogenomic analyses of the Cucujiformia with transcriptome or genome data.
DOI: 10.15468/dl.g2xy32
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Illinois Natural History Survey Insect Collection",
 "Geometry POLYGON((-90.17796 38.1575,-89.00982 37.23808,-87.83855 37.52608,-87.83855 42.14453,-90.87194 42.14453,-91.53189 40.02744,-90.17796 38.1575))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Melitoma taurea"
 ]
}

 The dataset includes 16 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003970-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18403560
title: Data Repository: Conservation of a lateralized visuo-motor axis in hawkmoth proboscis probing

description: Walsh L., Kannegieser S., & Stöckl A. (2026) Conservation of a lateralized visuo-motor axis in hawkmoth proboscis probing.

Data repository containing: data to reproduce analyses and figures; images of hawkmoth eyes before/after painting; example videos showing tracking and simulations of visual field.

Each folder contains a read-me file explaining details and usage of files.