cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/4280dedf155f02c91420619d6a631cd0
title: SBC LTER: Reef: Sightings of sea otters (Enhydra lutris) near Santa Barbara and Channel Islands, ongoing since 2007

description: These data describe the number, location and activity or behavior of
  sea otters (Enhydra lutris) individuals observed
  along the Santa Barbara Coast and local Channel Islands, during SBC
  LTER field sampling. Observations began in 2007. Records are collected
  regularly at SBC core sites and opportunistically while research staff
  are underway or travelling between sites. Locations are included, but
  some latitudes and longitudes are approximate.
DOI: 10.5281/zenodo.2542055
title: pml

description: pml
DOI: 10.5281/zenodo.2542056
title: pml

description: pml
DOI: 10.5281/zenodo.2542063
title: Raw data of the manuscript: Heterogeneous Freezing of Liquid Suspensions Including Juices and Extracts from Berries and Leaves from perennial Plants

description: Freezing data
DOI: 10.5281/zenodo.2542064
title: Raw data of the manuscript: Heterogeneous Freezing of Liquid Suspensions Including Juices and Extracts from Berries and Leaves from perennial Plants

description: Freezing data
DOI: 10.25345/c5xg8r
title: MassIVE MSV000083339 - AP-MS analysis using Flp-In-293 cells stably expressing SUDS3 with N-terminal HaloTag
title: AP-MS analysis using Flp-In-293 cells stably expressing SUDS3 with N-terminal HaloTag
DOI: 10.17632/pwg3gbz85j.1
title: Data for: A thermodynamics-based mathematical model for the frost heave of unsaturated freezing soils

description: The relationship between freezing temperature and water content, capillary water content, film water content.
DOI: 10.6073/pasta/92453dbf5e885748819fa6cbbf46a376
title: Long term limnological measures in Acton Lake, a southwest Ohio reservoir, and its inflow streams: 1992-2017

description: Long-term data were collected from Acton Lake and its inflow streams,
  on a suite of physical, chemical and biological variables. The data
  are collected as part of long-term research investigating how Acton
  Lake, a eutrophic reservoir, responds to changes in ecosystem
  subsidies of detritus (sediments) and nutrients. Our data span 26
  years, from 1992-2017, although for some parameters the data set spans
  a shorter time frame within this period. In three of Acton Lake's
  inflow streams, collectively constituting ~86% of the lake's
  watershed, we include data on hourly stream discharge, as well as
  concentrations of suspended sediments, ammonium-nitrogen (N),
  nitrate-N, and soluble reactive phosphorus (P). Data on the
  concentrations of these constituents were collected at various time
  scales depending on stream discharge (usually every 6-8 hours during
  storms, every 1-3 days during baseflow). In Acton Lake, we collected
  data on several parameters from an "outflow" site, at the
  deepest part of the lake where there is usually stable thermal
  stratification in summer. Vertical profile data were collected for
  temperature, dissolved oxygen, and "light"
  (photosynthetically active radiation, PAR). Depth profile data were
  collected at 0.5 or 1 m intervals (depending on depth and year),
  usually from April or May until September or October. In addition,
  data for several parameters were obtained from "integrated
  samples" that collect water from the lake surface to the bottom
  of the euphotic zone (defined as the depth at which PAR equals 1% of
  PAR at the surface) with a tube or pump. Parameters for which
  integrated data are presented include chlorophyll; suspended solids;
  non-volatile suspended solids; particulate (seston) carbon, nitrogen
  and phosphorus; and total nitrogen and total phosphorus. We also
  collected Secchi depth data, using standard methods. Larval fish were
  collected in the top 2 meters of the water column with a metered net
  to generate estimates of larval fish density. Finally, zooplankton
  were collected by towing a net vertically through the water column; we
  present data on total zooplankton biomass here.
DOI: 10.17632/dmpt87brpy.1
title: Data for: Accuracy of Thyroid Cartilage Fenestration during Montgomery Medialization Thyroplasty
DOI: 10.5281/zenodo.2542134
title: MD simulations of bilayers containing PC/PS mixtures and CaCl_2: 250POPC_50POPS_1MCaCl_2

description: NMRLipids IV project (nmrlipids.blogspot.fi)

Gromacs, CHARMM36 FF, 1 atm, 298K, 200ns (no pre-equilibration)

250 POPC lipids, 50 POPS lipids, 73964 Atoms
DOI: 10.5281/zenodo.2542135
title: MD simulations of bilayers containing PC/PS mixtures and CaCl_2: 250POPC_50POPS_1MCaCl_2

description: NMRLipids IV project (nmrlipids.blogspot.fi)

Gromacs, CHARMM36 FF, 1 atm, 298K, 200ns (no pre-equilibration)

250 POPC lipids, 50 POPS lipids, 73964 Atoms
DOI: 10.18430/m35jlt
title: X-ray diffraction data for the the crystal structure of the bacteriophage T4 MotA C-terminal domain in complex with dsDNA reveals a novel protein-DNA recognition motif (5JLT)
DOI: 10.18430/m35woo
title: X-ray diffraction data for the the crystal structure of the Staphylococcus aureus Fatty acid Kinase (Fak) B1 protein loaded with Myristic acid (C14:0) to 1.78 Angstrom resolution (5WOO)
DOI: 10.18430/m36b9i
title: X-ray diffraction data for the the crystal structure of the Staphylococcus aureus Fatty acid Kinase (Fak) B1 protein loaded with 14-Methylhexadecanoic Acid (Anteiso C17:0) to 1.93 Angstrom resolution (6B9I)
DOI: 10.25345/c5sp6t
title: MassIVE MSV000083340 - DM_061218_T141-ISP4_100MeOH_run-Bridget
title: LC-MS Run on C. caeruleus T141 100% MeOH SepPak fraction plus ISP4 and MeOH controls, run by Bridget
DOI: 10.5281/zenodo.2542150
title: MD simulations of bilayers containing PC/PS mixtures and CaCl_2: 250POPC_50POPS_neutral

description: NMRLipids IV project (nmrlipids.blogspot.fi)

Gromacs, CHARMM36 FF, 1 atm, 298K, 200ns (no pre-equilibration)

250 POPC lipids, 50 POPS lipids, 73521 Atoms
DOI: 10.5281/zenodo.2542151
title: MD simulations of bilayers containing PC/PS mixtures and CaCl_2: 250POPC_50POPS_neutral

description: NMRLipids IV project (nmrlipids.blogspot.fi)

Gromacs, CHARMM36 FF, 1 atm, 298K, 200ns (no pre-equilibration)

250 POPC lipids, 50 POPS lipids, 73521 Atoms
DOI: 10.25345/c5p02g
title: MassIVE MSV000083341 - DM_081618_all_Couchioplanes_SepPak_fractions
title: LC-MS run on 08.16.18 of all Couchioplanes (T094, T095, T127, T141) SepPak fractions (except only active fractions for T141) in duplicate including controls and MeOH blanks
DOI: 10.5281/zenodo.2542163
title: MD simulations of bilayers containing PC/PS mixtures and CaCl_2: 150POPC_150POPS_neutral

description: NMRLipids IV project (nmrlipids.blogspot.fi)

Gromacs, CHARMM36 FF, 1 atm, 298K, 200ns (no pre-equilibration)

150 POPC lipids, 150 POPS lipids, 71655 Atoms
DOI: 10.5281/zenodo.2542164
title: MD simulations of bilayers containing PC/PS mixtures and CaCl_2: 150POPC_150POPS_neutral

description: NMRLipids IV project (nmrlipids.blogspot.fi)

Gromacs, CHARMM36 FF, 1 atm, 298K, 200ns (no pre-equilibration)

150 POPC lipids, 150 POPS lipids, 71655 Atoms
DOI: 10.5281/zenodo.2542176
title: MD simulations of bilayers containing PC/PS mixtures and CaCl_2: 250POPC_50POPS_0.15MCaCl_2

description: NMRLipids IV project (nmrlipids.blogspot.fi)

Gromacs, CHARMM36 FF, 1 atm, 298K

250 POPC lipids, 50 POPS lipids, 73529 Atoms
DOI: 10.18430/m36nj1
title: X-ray diffraction data for the crystal structure of class A beta-lactamase from Clostridium kluyveri DSM 555 (6NJ1)
DOI: 10.18430/m36njk
title: X-ray diffraction data for the crystal structure of beta-lactamase from Sulfitobacter sp. EE-36 (6NJK)
DOI: 10.5281/zenodo.2542183
title: Inorganic Arsenic Exposure Induces Sex Disparate Effects and Exacerbates Ischemia-Reperfusion Injury in the Female Heart

description: Supplemental Tables S1-S3. <em>Echocardiographic parameters for male and female hearts, pre- and post-iAS exposure to 0 ppb (control), 10 ppb, 100 ppb or 1000 ppb iAS for four weeks.</em>
DOI: 10.5281/zenodo.2542184
title: Inorganic Arsenic Exposure Induces Sex Disparate Effects and Exacerbates Ischemia-Reperfusion Injury in the Female Heart

description: Supplemental Tables S1-S3. <em>Echocardiographic parameters for male and female hearts, pre- and post-iAS exposure to 0 ppb (control), 10 ppb, 100 ppb or 1000 ppb iAS for four weeks.</em>
DOI: 10.25345/c5j61x
title: MassIVE MSV000083342 - DM_011419_T094_50MeOH_active_Semi-fractions-5-8
title: LCMS run on 01.14.19 of T094 100% MeOH SepPak fraction, fractionated on the Semiprep, and samples were resuspended in 50%MeOH before running - all active, #6 is most active
DOI: 10.5281/zenodo.2542228
title: Derived data and analysis code accompanying Deines et al. 2019, Environmental Research Letters

description: This codebase accompanies the paper:

Deines, JM, AD Kendall, JJ Butler, Jr., & DW Hyndman. 2019. Quantifying irrigation adaptation strategies in response to stakeholder-driven groundwater management in the US High Plains Aquifer. Environmental Research Letters. DOI: https://doi.org/10.1088/1748-9326/aafe39

Data and code at time of publication.
DOI: 10.5281/zenodo.2542229
title: Derived data and analysis code accompanying Deines et al. 2019, Environmental Research Letters

description: This codebase accompanies the paper:

Deines, JM, AD Kendall, JJ Butler, Jr., & DW Hyndman. 2019. Quantifying irrigation adaptation strategies in response to stakeholder-driven groundwater management in the US High Plains Aquifer. Environmental Research Letters. DOI: https://doi.org/10.1088/1748-9326/aafe39

Data and code at time of publication.
DOI: 10.5281/zenodo.2538178
title: North American watershed precipitation from WRF

description: Precipitation estimates from the Weather Research and Forecasting (WRF) regional climate model. Each file contains the following variables for the stated watershed:

lat: latitude of each grid point, in degrees north

lon: longitude of each grid point, in degrees north

time: day of simulation

RAINC: accumulated total cumulus precipitation, in mm

RAINNC: accumulated total grid scale precipitation, in mm

SNOWNC: accumulated total grid scale snow and ice, in mm

watershed mask: matrix where 1 indicates the grid point is inside the watershed, 0 is outside

watershed mountain mask: matrix where 1 indicates the grid point is within the mountainous portion of the watershed, 0 is outside
DOI: 10.5281/zenodo.2538179
title: North American watershed precipitation from WRF

description: Precipitation estimates from the Weather Research and Forecasting (WRF) regional climate model. Each file contains the following variables for the stated watershed:

lat: latitude of each grid point, in degrees north

lon: longitude of each grid point, in degrees north

time: day of simulation

RAINC: accumulated total cumulus precipitation, in mm

RAINNC: accumulated total grid scale precipitation, in mm

SNOWNC: accumulated total grid scale snow and ice, in mm

watershed mask: matrix where 1 indicates the grid point is inside the watershed, 0 is outside

watershed mountain mask: matrix where 1 indicates the grid point is within the mountainous portion of the watershed, 0 is outside
DOI: 10.25345/c5dg7q
title: MassIVE MSV000083343 - Standard proteoforms and their complexes for native mass spectrometry
title: Native mass spectrometry (nMS) is a technique growing at the interface of analytical chemistry, structural biology, and proteomics that enables the detection and partial characterization of non-covalent protein assemblies. Currently, the standardization and dissemination of nMS is hampered by technical challenges associated with instrument operation, benchmarking, and optimization over time. Here, we provide a standard operating procedure for acquiring high quality native mass spectra of 30-300 kDa proteins using an Orbitrap mass spectrometer. By describing reproducible sample preparation, loading, ionization, and nMS analysis, we forward two proteoforms and three complexes as possible standards to advance training and longitudinal assessment of instrument performance. Spectral data for five standards can guide assessment of instrument parameters, data production, and data analysis. By introducing this set of standards and protocols, we aim to help normalize native mass spectrometry practices across labs and provide benchmarks for reproducibility and high-quality data production in the years ahead.
DOI: 10.5281/zenodo.2542258
title: Fagottini and tenoroons from the 18th and 19th centuries: gallery of makers' stamps

description: Instrument makers' stamps of small-sized bassoons examined during the two-year SNSF research project "Fagottini and tenoroons - forgotten giants" are presented in this collection. Datasets of individual instruments may be located by searching for the indicated FT identification numbers.
DOI: 10.5281/zenodo.2542259
title: Gallery of stamps

description: Gallery of stamps: FT10, FT14, FT15, FT17, FT23, FT27.
DOI: 10.5281/zenodo.2542271
title: Community size affects the signals of niche selection and ecological drift on beta diversity in stream organisms: data and script

description: This is a unique dataset on insect communities sampled identically in a total of 200 streams in climatically highly different regions (100 in Brazil and 100 in Finland). The sampling design included 5 streams (communities) per watershed and provided us replicates of metacommunities (watersheds). Data also include information on in-stream variables (such as current velocity (m/s), depth (cm), stream width (cm), % of sand (0.25-2 mm), gravel (2-16 mm), pebble (16-64 mm), cobble (64-256 mm), and boulder (256-1024 mm), % of canopy cover by riparian vegetation, pH, conductivity, total nitrogen, and total phosphorus) and catchment level variables (such as average slope, % of native forest cover, pasture, agriculture, planted forests, urban areas, mining, water bodies, bare soil, secondary forest cover, and mixed land uses).

In addition to the dataset, here we also provide and R code used to investigate the relationship between beta diversity and community size. This code calculates 4 types of beta-diversity metric for each of 100 watersheds (5 streams) in Brazil and Finland. Beta diversity: Sorensen and Bray-Curtis dissimilarity between all pairs. Beta deviation from null models: Raup-Crick (vegan version) and Bray-Curtis beta-deviation (based on the scripts by Chris Catano and Jonathan Myers). These beta diversity metrics are modelled against community size, environmental heterogeneity and spatial extent.
description: This research originated during a joint research project funded by grant #2013/50424-1 (São Paulo Research Foundation, FAPESP) to TS, and by grants #273557 and #273560 to JH and JS (Academy of Finland).
DOI: 10.6073/pasta/3e056c28fce0cb9c45a1b8f8d1db3537
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating and Drying Research (DryPEHR): Peak growing season aboveground biomass 2011-2017. (Reformatted to ecocomDP Design Pattern)

description: This data package is formatted according to the "ecocomDP", a data package design pattern for ecological community surveys, and data from studies of composition and biodiversity. For more information on the ecocomDP project see https://github.com/EDIorg/ecocomDP/tree/master, or contact EDI https://environmentaldatainitiative.org.

This Level 1 data package was derived from the Level 0 data package found here: https://portal.edirepository.org/nis/mapbrowse?scope=knb-lter-bnz&identifier=502&revision=16

The abstract below was extracted from the Level 0 data package and is included for context:

This drying and warming experiment addresses the following questions: 1) Does ecosystem drying, warming and permafrost thaw cause a net release or uptake of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C that comprises the bulk of the soil C pool influence ecosystem C loss? 3) How do drying and warmign affect plant communities and ecosystem properties? We are answering these questions using a combined warming and drying experiment (DryPEHR), which is situated with the Carbon in Permafrost Experimental Heating Research (CiPEHR) project and located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. Warming treatment here refers to growing season air temperature warming (~1C) using open top chambers (OTC) combined with soil 'warming' using snow fences during the snow covered months. Drying is achieve using an automated pumping system that lowers the water table in the dry plots. Soil warming began in 2008; OTCs and drying in 2011. Above ground plant biomass was surveyed non-destructively using a point-intercept method for all vascular and moss species at peak growing season.
DOI: 10.5517/ccdc.csd.cc1prmmp
title: CCDC 1571843: Experimental Crystal Structure Determination

description: Related Article: Issa S. Issa, Helen S. Toogood, Linus O. Johannissen, James Raftery, Nigel S. Scrutton, John M. Gardiner|2019|Chem.-Eur.J.|25|2983|doi:10.1002/chem.201805219
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.18112/openneuro.ds001652.v1.1.0
title: Ironia VEV
DOI: 10.18112/openneuro.ds001652.v1.1.1
title: Ironia VEV
DOI: 10.5517/ccdc.csd.cc1zmgrt
title: CCDC 1835967: Experimental Crystal Structure Determination

description: Related Article: Yanju Liu, Yongzhen Han, Zongyao Zhang, Wei Zhang, Wenzhen Lai, Yong Wang, Rui Cao|2019|Chemical Science|10|2613|doi:10.1039/C8SC04529A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zq8vt
title: CCDC 1838667: Experimental Crystal Structure Determination

description: Related Article: Priya Saxena, Jisha Mary Thomas, Chinnappan Sivasankar, Natesan Thirupathi|2019|New J.Chem.|43|2307|doi:10.1039/C8NJ04167A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zq8wv
title: CCDC 1838668: Experimental Crystal Structure Determination

description: Related Article: Priya Saxena, Jisha Mary Thomas, Chinnappan Sivasankar, Natesan Thirupathi|2019|New J.Chem.|43|2307|doi:10.1039/C8NJ04167A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zq8xw
title: CCDC 1838669: Experimental Crystal Structure Determination

description: Related Article: Priya Saxena, Jisha Mary Thomas, Chinnappan Sivasankar, Natesan Thirupathi|2019|New J.Chem.|43|2307|doi:10.1039/C8NJ04167A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zq8yx
title: CCDC 1838670: Experimental Crystal Structure Determination

description: Related Article: Priya Saxena, Jisha Mary Thomas, Chinnappan Sivasankar, Natesan Thirupathi|2019|New J.Chem.|43|2307|doi:10.1039/C8NJ04167A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zq8zy
title: CCDC 1838671: Experimental Crystal Structure Determination

description: Related Article: Priya Saxena, Jisha Mary Thomas, Chinnappan Sivasankar, Natesan Thirupathi|2019|New J.Chem.|43|2307|doi:10.1039/C8NJ04167A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zq900
title: CCDC 1838672: Experimental Crystal Structure Determination

description: Related Article: Priya Saxena, Jisha Mary Thomas, Chinnappan Sivasankar, Natesan Thirupathi|2019|New J.Chem.|43|2307|doi:10.1039/C8NJ04167A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zq911
title: CCDC 1838673: Experimental Crystal Structure Determination

description: Related Article: Priya Saxena, Jisha Mary Thomas, Chinnappan Sivasankar, Natesan Thirupathi|2019|New J.Chem.|43|2307|doi:10.1039/C8NJ04167A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zq922
title: CCDC 1838674: Experimental Crystal Structure Determination

description: Related Article: Priya Saxena, Jisha Mary Thomas, Chinnappan Sivasankar, Natesan Thirupathi|2019|New J.Chem.|43|2307|doi:10.1039/C8NJ04167A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zq933
title: CCDC 1838675: Experimental Crystal Structure Determination

description: Related Article: Priya Saxena, Jisha Mary Thomas, Chinnappan Sivasankar, Natesan Thirupathi|2019|New J.Chem.|43|2307|doi:10.1039/C8NJ04167A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.