cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13567265.v2
title: Original data of manuscript entitled "Quantification of clinical biomarker pharmacokinetics and distribution by deep learning-based segmentation and signal-oriented analysis of MSOT data" by Hoffmann and Gerst et al.

description: This dataset contains all original data used in the manuscript entitled "Quantification of clinical biomarker pharmacokinetics and distribution by deep learning-based segmentation and signal-oriented analysis of MSOT data" by Hoffmann and Gerst <i>et al</i>.<br><br>Contained data:<br><br>1. Anatomical_RoiSets.zip<br>This folder contains anatomical ROI sets of liver, spine and aorta regions used in the manuscript.<br>2. Deep-learning_manual-annotation_data.zipThis folder contains the manual annotations used for the deep learning-based segmentation of animals.<br><br>3. Signal-oriented_analysis_data.zip<br>This folder contains all data used for the signal-oriented analysis.<br>The data consists of two different treatments: Sham (control animals) and PCI (diseased animals). Each animal folder is identified by a unique name and contains an MSOT image in .tif file format and a region of interest (ROI) in .roi file format. The MSOT image is a time-resolved 4d image with 4 channels (water, indocyanine green, deoxygenated haemoglobin and oxygenated haemoglobin). The ROI derived by deep learning-based segmentation comprises the whole animal and is referred to as animal-ROI in the manuscript.<br><br>4. Tissue-oriented_analysis_data.zip<br>This folder contains all data used for the tissue-oriented analysis.<br>The data consists of two different treatments: Sham (control animals) and PCI (diseased animals). For each animal there exist two files prefixed with the animal identifier: a pre-processed MSOT image in .tif file format and a region of interest (ROI) in .roi file format. The MSOT image is a pre-processed, time-resolved 3d image of the indocyanine green channel (see manuscript for details on image pre-processing). The ROI comprises the liver tissue and is The third folder contains the MSOT image and the ROIs that were used to demonstrate the sensitivity of the tissue-oriented analysis towards slight changes in ROI positioning.<br>5. Annotation-comparison_ROIs.zipThis folder contains all ROI sets used for the comparison of manual and automated annotation.<br>
DOI: 10.7284/112706
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR1304 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112715
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise RR1304 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112714
title: Expendable Probe data collected during research cruise RR1304 using a Turo Quoll instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112707
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1304 using a Furuno GP-150 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112709
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1304 using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122599
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1304 using a Trimble SPS351 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112711
title: Gravimeter data collected during research cruise RR1304 using a Bell BGM-3 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122598
title: HDSS (Hydrographic Doppler Sonar System) data collected during research cruise RR1304 using a SIO HDSS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112710
title: INS (Inertial Navigation System) data collected during research cruise RR1304 using a iXSea Phins instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112705
title: Meteorological Station data collected during research cruise RR1304 using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112708
title: Multibeam Echosounder data collected during research cruise RR1304 using a Kongsberg EM122 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112704
title: Winch data collected during research cruise RR1304 using a Markey DESH-5 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112713
title: Winch data collected during research cruise RR1304 using a Markey DUTW-9-11 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112775
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR1309 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112785
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise RR1309 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112784
title: Expendable Probe data collected during research cruise RR1309 using a Turo Quoll instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112776
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1309 using a Furuno GP-150 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112779
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1309 using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122607
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1309 using a Trimble SPS351 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112781
title: Gravimeter data collected during research cruise RR1309 using a Bell BGM-3 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122606
title: HDSS (Hydrographic Doppler Sonar System) data collected during research cruise RR1309 using a SIO HDSS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112780
title: INS (Inertial Navigation System) data collected during research cruise RR1309 using a iXSea Phins instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112774
title: Meteorological Station data collected during research cruise RR1309 using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112777
title: Multibeam Echosounder data collected during research cruise RR1309 using a Kongsberg EM122 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112778
title: Singlebeam Echosounder data collected during research cruise RR1309 using a Knudsen 3260 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112772
title: Winch data collected during research cruise RR1309 using a Markey DESH-5 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112783
title: Winch data collected during research cruise RR1309 using a Markey DUTW-9-11 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133091
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR1319 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126591
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR1704 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126599
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise RR1704 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126592
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1704 using a Furuno GP-150 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126594
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1704 using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126601
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1704 using a Trimble SPS351 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126598
title: HDSS (Hydrographic Doppler Sonar System) data collected during research cruise RR1704 using a SIO HDSS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126597
title: INS (Inertial Navigation System) data collected during research cruise RR1704 using a iXSea Phins instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126602
title: INS (Inertial Navigation System) data collected during research cruise RR1704 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126590
title: Meteorological Station data collected during research cruise RR1704 using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126593
title: Multibeam Echosounder data collected during research cruise RR1704 using a Kongsberg EM122 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126604
title: Singlebeam Echosounder data collected during research cruise RR1704 using a Knudsen 3260 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126596
title: Winch data collected during research cruise RR1704 using a Markey DUTW-9-11 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126600
title: Winch data collected during research cruise RR1704 using a Markey DESH-5 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132612
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR1813 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132619
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise RR1813 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132614
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1813 using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132623
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1813 using a Furuno GP-170 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132615
title: Gravimeter data collected during research cruise RR1813 using a Bell BGM-3 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132618
title: INS (Inertial Navigation System) data collected during research cruise RR1813 using a iXSea Phins instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132622
title: INS (Inertial Navigation System) data collected during research cruise RR1813 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132611
title: Meteorological Station data collected during research cruise RR1813 using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132613
title: Multibeam Echosounder data collected during research cruise RR1813 using a Kongsberg EM122 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132617
title: Winch data collected during research cruise RR1813 using a Markey DUTW-9-11 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132620
title: Winch data collected during research cruise RR1813 using a Markey DESH-5 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/143392
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR2004 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/143401
title: Gyrocompass data collected during research cruise RR2004 using a Sperry MK-37 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145752
title: Multibeam Echosounder data collected during research cruise RR2004 using a Kongsberg EM124 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145753
title: Multibeam Echosounder data collected during research cruise RR2004 using a Kongsberg EM124 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/143602
title: Gyrocompass data collected during research cruise RR2101 using a Sperry MK-37 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/147322
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR2102 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/147323
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise RR2102 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/147324
title: Expendable Probe data collected during research cruise RR2102 using a Turo Quoll instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/147142
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR2102 using a Furuno GP-170 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/147143
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR2102 using a Furuno GP-170 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/147144
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR2102 using a Trimble ABX-Two instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/147145
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR2102 using a Trimble ABX-Two instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/147320
title: Gravimeter data collected during research cruise RR2102 using a Bell BGM-3 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/147328
title: Gyrocompass data collected during research cruise RR2102 using a Sperry MK-37 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/147146
title: INS (Inertial Navigation System) data collected during research cruise RR2102 using a iXSea Phins instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/147147
title: INS (Inertial Navigation System) data collected during research cruise RR2102 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/147321
title: Meteorological Station data collected during research cruise RR2102 using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/147325
title: Multibeam Echosounder data collected during research cruise RR2102 using a Kongsberg EM124 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/147327
title: Multibeam Echosounder data collected during research cruise RR2102 using a Kongsberg EM124 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.19526146.v1
title: Data supporting m6A methylation mediates LHPP acetylation as a tumour aerobic glycolysis suppressor to improve the prognosis of gastric cancer

description: Clinical Information for Tissue microarrays
DOI: 10.7284/147326
title: Winch data collected during research cruise RR2102 using a Markey DUTW-9-11 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/147329
title: Winch data collected during research cruise RR2102 using a Markey DESH-5 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/143737
title: Gyrocompass data collected during research cruise RR2103 using a Sperry MK-37 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145757
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR2105 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145767
title: Gyrocompass data collected during research cruise RR2105 using a Sperry MK-37 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145760
title: Multibeam Echosounder data collected during research cruise RR2105 using a Kongsberg EM712 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145761
title: Multibeam Echosounder data collected during research cruise RR2105 using a Kongsberg EM712 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145762
title: Multibeam Echosounder data collected during research cruise RR2105 using a Kongsberg EM124 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145772
title: Multibeam Echosounder data collected during research cruise RR2105 using a Kongsberg EM124 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145759
title: Singlebeam Echosounder data collected during research cruise RR2105 using a Knudsen 3260 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139679
title: Fluorometer data collected during research cruise SAV-20-01 using a WET Labs WETStar instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139681
title: GNSS (Global Navigation Satellite System) data collected during research cruise SAV-20-01 using a Furuno GP-90 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139682
title: GNSS (Global Navigation Satellite System) data collected during research cruise SAV-20-01 using a Furuno SC50 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139683
title: GNSS (Global Navigation Satellite System) data collected during research cruise SAV-20-01 using a Hemisphere R131 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition