cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5945227.v1
title: Values obtained for each replicate of matrix effects and recovery samples (lung tissue, plasma and culture medium) (xlsx)

description: Demonstrated all values obtained for each replicate of matrix effects and recovery samples (lung tissue, plasma and culture medium). In these experiments the analytes corresponded to internal standards (deutered compounds) for eliminate the interference of matrix endogenous metabolites. The individual values were used to determine the average (n = 6) of matrix effect and recovery of the extraction method.
DOI: 10.6084/m9.figshare.5945224
title: Values obtained for each replicate of quality control (HQC, MQC and LQC) assay (xlsx)

description: Presented all values obtained for each replicate of quality control (HQC, MQC and LQC) assay. The individual values from quality control assay were used to determine the average (n = 5) of precision and accuracy of the MRMHR method.
DOI: 10.6084/m9.figshare.5945224.v1
title: Values obtained for each replicate of quality control (HQC, MQC and LQC) assay (xlsx)

description: Presented all values obtained for each replicate of quality control (HQC, MQC and LQC) assay. The individual values from quality control assay were used to determine the average (n = 5) of precision and accuracy of the MRMHR method.
DOI: 10.6084/m9.figshare.5945221
title: Linear regression equation, correlation coefficient (r2) and linear range of concentration for each analyte (xlsx)

description: Showed the linear regression graphics. MS files were processed for each metabolite quantified in MRMHR method with mobile phase pH 5.8. The graphics describe the linear regression equation, correlation coefficient (r2) and linear range of concentration for each analyte assessed by means of 10-point standard curves prepared for five replicate samples. Also the retention time were described in this file.
DOI: 10.6084/m9.figshare.5945221.v1
title: Linear regression equation, correlation coefficient (r2) and linear range of concentration for each analyte (xlsx)

description: Showed the linear regression graphics. MS files were processed for each metabolite quantified in MRMHR method with mobile phase pH 5.8. The graphics describe the linear regression equation, correlation coefficient (r2) and linear range of concentration for each analyte assessed by means of 10-point standard curves prepared for five replicate samples. Also the retention time were described in this file.
DOI: 10.6084/m9.figshare.5945212
title: Supplementary Tables 1-4.xls

description: Supplementary Tables 1-4
DOI: 10.6084/m9.figshare.5944852
title: Images from Chandler, Chari et al. 2017 PLoS Genetics "How well do you know your mutation? Complex effects of genetic background on expressivity, complementation, and ordering of allelic effects"

description: These are the images associated with the data collected for <br><br>http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1007075<br><br>For the zipped folder GS_data:<br>Data Provenance (how data was collected):<br>via dissections, area imaging<br>Author: <br>Performed - Ian Dworkin, Gayatri Sivaratnam, Samiksha Kaul <br>Dissections - Gayatri Sivaratnam, Samiksha Kaul<br>Imaging - I. Dworkin, G. Sivaratnam, Samiksha Kaul <br><br>Dates <br>samples Collected: July 21, 2015<br>Dissection: August 17 - September25, 2015<br>Imging: September 30, 2015 (ID, GS, SK)<br>(Date samples were collected, dates for imaging)<br><br>A bit about the experiment:<br>16 DGRP lines were crossed to 3 mutations (sd 1, sd E3, sd 58d) and a wildtype (SAM)<br>The effects of intermediate mutation on different lines, whether the severity of this effect varied across the different lines is being investigated.<br><br>Microscope, camera used. Leica m125 with a Leica DFC400 camera, using Leica Application Software 3.4.0. Greyscale images. <br><br>Each image is 1392 x 1040 px. Real size 2.59 x 1.93 mm<br><br>Magnification : 50X (0.5X?)<br>aperture about halfway across (59%)<br>Brightness: 68%<br>Gamma: 0.80<br><br>Notes:<br>naming convention for images: SAM/sd1/sde3/sd58d_line#_M_1/2/3/4/5/6.TIF<br><br>SAM/sd1/sde3/sd58d - either the wild type (SAM) allele for scalloped, or allele 1, E3 or 58d
DOI: 10.6084/m9.figshare.5944852.v1
title: Images from Chandler, Chari et al. 2017 PLoS Genetics "How well do you know your mutation? Complex effects of genetic background on expressivity, complementation, and ordering of allelic effects"

description: These are the images associated with the data collected for <br><br>http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1007075<br><br>For the zipped folder GS_data:<br>Data Provenance (how data was collected):<br>via dissections, area imaging<br>Author: <br>Performed - Ian Dworkin, Gayatri Sivaratnam, Samiksha Kaul <br>Dissections - Gayatri Sivaratnam, Samiksha Kaul<br>Imaging - I. Dworkin, G. Sivaratnam, Samiksha Kaul <br><br>Dates <br>samples Collected: July 21, 2015<br>Dissection: August 17 - September25, 2015<br>Imging: September 30, 2015 (ID, GS, SK)<br>(Date samples were collected, dates for imaging)<br><br>A bit about the experiment:<br>16 DGRP lines were crossed to 3 mutations (sd 1, sd E3, sd 58d) and a wildtype (SAM)<br>The effects of intermediate mutation on different lines, whether the severity of this effect varied across the different lines is being investigated.<br><br>Microscope, camera used. Leica m125 with a Leica DFC400 camera, using Leica Application Software 3.4.0. Greyscale images. <br><br>Each image is 1392 x 1040 px. Real size 2.59 x 1.93 mm<br><br>Magnification : 50X (0.5X?)<br>aperture about halfway across (59%)<br>Brightness: 68%<br>Gamma: 0.80<br><br>Notes:<br>naming convention for images: SAM/sd1/sde3/sd58d_line#_M_1/2/3/4/5/6.TIF<br><br>SAM/sd1/sde3/sd58d - either the wild type (SAM) allele for scalloped, or allele 1, E3 or 58d
DOI: 10.6084/m9.figshare.5944291
title: Radiolaria contribution to vertical export in the California Current Ecosystem revealed by DNA metabarcoding - Supplementary data

description: Supplementary data to:<br>Gutierrez-rodriguez, A., Stukel, M.R., Lopes dos Santos, A., Biard, T., Vaulot, D., Landry, M.R. & Not, F. 2018. High contribution of Rhizaria (Radiolaria) to vertical export in the California Current Ecosystem revealed by DNA metabarcoding. ISME J. submitted.<br><br><br><b>Supplementary data :</b><b><br></b><b>Supplementary Data S1. </b>CCE Samples.xlsx. List of samples with metadata <b><br></b><b>Supplementary Data S2. </b>CCE OTU 0.97.fasta. Fasta file with sequence of OTUs <b><br></b><b>Supplementary Data S2. </b>CCE OTU table.xlsx. Read abundance table of OTUs (rows) vs Samples (Column)<br>
DOI: 10.6084/m9.figshare.5944291.v1
title: Radiolaria contribution to vertical export in the California Current Ecosystem revealed by DNA metabarcoding - Supplementary data

description: Supplementary data to:<br>Gutierrez-rodriguez, A., Stukel, M.R., Lopes dos Santos, A., Biard, T., Vaulot, D., Landry, M.R. & Not, F. 2018. High contribution of Rhizaria (Radiolaria) to vertical export in the California Current Ecosystem revealed by DNA metabarcoding. ISME J. submitted.<br><br><br><b>Supplementary data :</b><b><br></b><b>Supplementary Data S1. </b>CCE Samples.xlsx. List of samples with metadata <b><br></b><b>Supplementary Data S2. </b>CCE OTU 0.97.fasta. Fasta file with sequence of OTUs <b><br></b><b>Supplementary Data S2. </b>CCE OTU table.xlsx. Read abundance table of OTUs (rows) vs Samples (Column)<br>
DOI: 10.6084/m9.figshare.5944015
title: Langtjern catchment lake carbon budget

description: <i>Records (1986-2015) of water chemical, meteorological and hydrological data for the Langtjern catchment (4.8 km<sup>2</sup>, </i><i>60.371 N, 9.727 E</i><i>) in Norway (inlet, outlet TOC concentrations and discharge; climate)</i>
DOI: 10.6084/m9.figshare.5944015.v1
title: Langtjern catchment lake carbon budget

description: <i>Records (1986-2015) of water chemical, meteorological and hydrological data for the Langtjern catchment (4.8 km<sup>2</sup>, </i><i>60.371 N, 9.727 E</i><i>) in Norway (inlet, outlet TOC concentrations and discharge; climate)</i>
DOI: 10.6084/m9.figshare.5943955
title: Melanin nano-pigments for heavy metal remediation from water

description: Melanins are water insoluble polyphenol compounds. The metal ion chelating property of natural melanin is exploited for removal of heavy metals from contaminated water. We optimized biosynthesis of melanin from marine bacterium using different growth media, media components, and operating conditions. Optimized medium yielded 513 mg/L melanin at 36 h of incubation, which was 3.15 times higher than the yield before optimization. Particle size analysis of the biosynthesized melanin indicated a size of 32 ± 0.98 nm. Preliminary investigation indicated that melanin nanoparticles could adsorb different heavy metals such as chromium, selenium, and lead from very low initial concentrations.
DOI: 10.6084/m9.figshare.5943955.v1
title: Melanin nano-pigments for heavy metal remediation from water

description: Melanins are water insoluble polyphenol compounds. The metal ion chelating property of natural melanin is exploited for removal of heavy metals from contaminated water. We optimized biosynthesis of melanin from marine bacterium using different growth media, media components, and operating conditions. Optimized medium yielded 513 mg/L melanin at 36 h of incubation, which was 3.15 times higher than the yield before optimization. Particle size analysis of the biosynthesized melanin indicated a size of 32 ± 0.98 nm. Preliminary investigation indicated that melanin nanoparticles could adsorb different heavy metals such as chromium, selenium, and lead from very low initial concentrations.
DOI: 10.6084/m9.figshare.5943715
title: Correctness of SPARQL results dataset

description: The dataset produced by IGUANAs Correctness Test for the following 4 triplestores using 175 real queries gathered from SWDF query logs (using FEASIBLE).<br>The gold standard was produced by Fuseki itself.<br>The metrics are MicroF1 and Micro F1 (resp. Recall & Precision)<br><br>- TensorStore (TNT)<br>- Fuseki<br>- NgraphStore(5)<br>- Virtuoso<br>
DOI: 10.6084/m9.figshare.5943673
title: suppl1_Environment drives spatio-temporal patterns of clonality in white spruce (Picea glauca) in Alaska.xlsx

description: Cloning is a strategy used by many plant species to reproduce under environmental conditions unfavorable for sexual reproduction. To test the alternative hypothesis whether cloning is an "exit strategy" or caused by selection, clonal growth in white spruce (<i>Picea glauca</i> (Moench) Voss) was investigated in three pairs of edge (treeline) and core (contiguous forest) stands in Alaska. Latitudinal and elevational treeline at a bluff in the dry Interior served as edge populations. A microsatellite assay with 11 markers was employed for a massive genotyping effort, resulting in a total of 2782 and 2571 trees that were mapped and genotyped, respectively. the lowest proportion of clonal trees was found in the Interior (4.5%) followed by stands from the elevational (9.0%) and latitudinal treeline (21.7%). At the two latter sites, clonal growth was more frequent in the edge population. Based on 960 aged trees an overall trend towards a higher proportion of clonal trees with age emerged, indicating that clonal growth becomes more likely with increasing age continues over the life span of a tree. The proportion of clonal trees was inversely correlated with the height of the lowermost branches and mean annual temperature; a positive correlation was found with mean annual rainfall. Most (80 of 96) clones were limited to distances less than 20 m, which indicates layering or uprooted trunks as the most likely mechanisms. Neither the F<sub>ST</sub> values, a PCA of the microsatellite multi-locus genotypes nor an AMOVA revealed any genetic predisposition for cloning. The degree of clonality at a site seems to be determined by environmental conditions.<br>Synthesis: The study demonstrates that clonal growth in <i>Picea glauca</i> is most likely the result of plant structure and dependent on environmental conditions. Since performance of trees, and therefor likely plant reproductive success, is lower in populations with a high proportion of clones, selection for clonal growth seems to be highly unlikely for white spruce.<i> </i> <br>
DOI: 10.6084/m9.figshare.5943673.v1
title: suppl1_Environment drives spatio-temporal patterns of clonality in white spruce (Picea glauca) in Alaska.xlsx

description: Cloning is a strategy used by many plant species to reproduce under environmental conditions unfavorable for sexual reproduction. To test the alternative hypothesis whether cloning is an "exit strategy" or caused by selection, clonal growth in white spruce (<i>Picea glauca</i> (Moench) Voss) was investigated in three pairs of edge (treeline) and core (contiguous forest) stands in Alaska. Latitudinal and elevational treeline at a bluff in the dry Interior served as edge populations. A microsatellite assay with 11 markers was employed for a massive genotyping effort, resulting in a total of 2782 and 2571 trees that were mapped and genotyped, respectively. the lowest proportion of clonal trees was found in the Interior (4.5%) followed by stands from the elevational (9.0%) and latitudinal treeline (21.7%). At the two latter sites, clonal growth was more frequent in the edge population. Based on 960 aged trees an overall trend towards a higher proportion of clonal trees with age emerged, indicating that clonal growth becomes more likely with increasing age continues over the life span of a tree. The proportion of clonal trees was inversely correlated with the height of the lowermost branches and mean annual temperature; a positive correlation was found with mean annual rainfall. Most (80 of 96) clones were limited to distances less than 20 m, which indicates layering or uprooted trunks as the most likely mechanisms. Neither the F<sub>ST</sub> values, a PCA of the microsatellite multi-locus genotypes nor an AMOVA revealed any genetic predisposition for cloning. The degree of clonality at a site seems to be determined by environmental conditions.<br>Synthesis: The study demonstrates that clonal growth in <i>Picea glauca</i> is most likely the result of plant structure and dependent on environmental conditions. Since performance of trees, and therefor likely plant reproductive success, is lower in populations with a high proportion of clones, selection for clonal growth seems to be highly unlikely for white spruce.<i> </i> <br>
DOI: 10.6084/m9.figshare.5943370
title: supplementary dataset of Robotic Investigation on Effect of Stretch Reflex and Crossed Inhibitory Response on Bipedal Hopping

description: Air Pressure Soleus Fig. 4.xlsx: This file contains the data to describe the air pressure in soleus muscles during stance phase<br>Theta Fig. 4.xlsx: This file contains the lateral inclination (Theta) during stance phase in hopping.<br>Data Fig.5 and Fig.6.xlsx: This file includes the data of Theta_td and Theta_lo of all the trials (Fig. 5). Also, it contains the comparison of slopes in Fig. 6
DOI: 10.6084/m9.figshare.5943370.v1
title: Data Fig. 5 and Fig. 6.xlsx

description: This file includes the data of Theta_td and Theta_lo of all the trials (Fig. 5). Also, it contains the comparison of slopes in Fig. 6
DOI: 10.6084/m9.figshare.5943370.v2
title: dataset for the figures (Fig. 4, Fig.5, and Fig.6)

description: Air Pressure Soleus Fig. 4.xlsx: This file contains the data to describe the air pressure in soleus muscles during stance phase<br>Theta Fig. 4.xlsx: This file contains the lateral inclination (Theta) during stance phase in hopping.<br>Data Fig.5 and Fig.6.xlsx: This file includes the data of Theta_td and Theta_lo of all the trials (Fig. 5). Also, it contains the comparison of slopes in Fig. 6
DOI: 10.6084/m9.figshare.5943370.v3
title: supplementary dataset of Robotic Investigation on Effect of Stretch Reflex and Crossed Inhibitory Response on Bipedal Hopping

description: Air Pressure Soleus Fig. 4.xlsx: This file contains the data to describe the air pressure in soleus muscles during stance phase<br>Theta Fig. 4.xlsx: This file contains the lateral inclination (Theta) during stance phase in hopping.<br>Data Fig.5 and Fig.6.xlsx: This file includes the data of Theta_td and Theta_lo of all the trials (Fig. 5). Also, it contains the comparison of slopes in Fig. 6
DOI: 10.6084/m9.figshare.5943289
title: Trial Information

description: Information about each trials for every subject. Letters assigned for every trial, please refer to the "Key" tab in the file.
DOI: 10.6084/m9.figshare.5943259
title: Headbob displays signal sex, social context and species identity in a Liolaemus lizard: Supplementary Material

description: Animal communication has a key role in animals and identifying the signals’ function is crucial. Most lizards communicate with each other through visual signals with headbob displays, which are up-and-down movements of the head or the anterior part of the body. In the present work, I described and analysed the headbob displays of <i>Liolaemus pacha</i> lizards in their natural habitat. Specifically, the objectives were to describe the form of headbobs, to analyse their structure and to compare between sexes and social contexts. Adult lizards were video-recorded, registering the sex and the social context, classified as broadcast, same-sex and female-male interactions. The form and structure of sequences and headbobs were obtained. To evaluate the effect of sex and social context on the structure of headbob sequences and on headbob bouts, generalized linear mixed models were made. Intersexual differences were found in headbob display frequency and in the structure of headbob sequences. Lizards in same-sex context made sequences with more bouts, shorter intervals, headbob bouts of longer duration and higher amplitude than broadcast and female-male context. Presence of concurring behaviour such as lateral compression, gular expansion, and back arching occurred simultaneously with headbobs in same-sex context. <i>Liolaemus pacha</i> made four different headbob bout forms, and males were characterised by using bouts A and B, whereas females used bouts D more frequent. Sex and social context influenced only the structure of bouts A and B. The results showed that bouts A and B might be multi-component signals and non-redundant.
DOI: 10.6084/m9.figshare.5943259.v1
title: Headbob displays signal sex, social context and species identity in a Liolaemus lizard: Supplementary Material

description: Animal communication has a key role in animals and identifying the signals’ function is crucial. Most lizards communicate with each other through visual signals with headbob displays, which are up-and-down movements of the head or the anterior part of the body. In the present work, I described and analysed the headbob displays of <i>Liolaemus pacha</i> lizards in their natural habitat. Specifically, the objectives were to describe the form of headbobs, to analyse their structure and to compare between sexes and social contexts. Adult lizards were video-recorded, registering the sex and the social context, classified as broadcast, same-sex and female-male interactions. The form and structure of sequences and headbobs were obtained. To evaluate the effect of sex and social context on the structure of headbob sequences and on headbob bouts, generalized linear mixed models were made. Intersexual differences were found in headbob display frequency and in the structure of headbob sequences. Lizards in same-sex context made sequences with more bouts, shorter intervals, headbob bouts of longer duration and higher amplitude than broadcast and female-male context. Presence of concurring behaviour such as lateral compression, gular expansion, and back arching occurred simultaneously with headbobs in same-sex context. <i>Liolaemus pacha</i> made four different headbob bout forms, and males were characterised by using bouts A and B, whereas females used bouts D more frequent. Sex and social context influenced only the structure of bouts A and B. The results showed that bouts A and B might be multi-component signals and non-redundant.
DOI: 10.6084/m9.figshare.5943238
title: Supplementary Material for: Prospective, Observational, Non-Interventional, Multicentre Study on the Efficacy and Tolerability of a New Calcipotriol/Betamethasone Aerosol Foam (Enstilar®) in Patients with Plaque Psoriasis under Daily Practice Conditions

description: <b><i>Background/Aims:</i></b> To assess the efficacy and tolerability of the new aerosol foam of calcipotriol 50 µg/g plus betamethasone dipropionate 0.5 mg/g (Cal/BD foam, Enstilar®) in psoriasis vulgaris under daily practice conditions. <b><i>Methods:</i></b> 410 adult psoriasis patients (56% male) from 87 German sites were enrolled in a 4-week, open-label, prospective, non-controlled, observational, non-interventional study. <b><i>Results:</i></b> At baseline, patients presented with a psoriasis severity of mild (41.81%), moderate (49.63%), and severe (8.31%) assessed by an investigator global assessment (IGA). After 4 weeks of treatment, 49% of the patients achieved an IGA of clear/almost clear. The mean affected body surface area was reduced from 12.91 to 7.55%, the PASI from 10.4 to 5.2 (<i>p</i> &lt; 0.0001). 43% of the patients with severe IGA achieved treatment success (IGA = 0/1 and ≥2-step improvement). 93% of the patients did not show any adverse events. <b><i>Conclusion:</i></b> The new Cal/BD foam showed a convincing efficacy and tolerability profile in daily practice, particularly in patients with severer disease manifestations.
DOI: 10.6084/m9.figshare.5943238.v1
title: Supplementary Material for: Prospective, Observational, Non-Interventional, Multicentre Study on the Efficacy and Tolerability of a New Calcipotriol/Betamethasone Aerosol Foam (Enstilar®) in Patients with Plaque Psoriasis under Daily Practice Conditions

description: <b><i>Background/Aims:</i></b> To assess the efficacy and tolerability of the new aerosol foam of calcipotriol 50 µg/g plus betamethasone dipropionate 0.5 mg/g (Cal/BD foam, Enstilar®) in psoriasis vulgaris under daily practice conditions. <b><i>Methods:</i></b> 410 adult psoriasis patients (56% male) from 87 German sites were enrolled in a 4-week, open-label, prospective, non-controlled, observational, non-interventional study. <b><i>Results:</i></b> At baseline, patients presented with a psoriasis severity of mild (41.81%), moderate (49.63%), and severe (8.31%) assessed by an investigator global assessment (IGA). After 4 weeks of treatment, 49% of the patients achieved an IGA of clear/almost clear. The mean affected body surface area was reduced from 12.91 to 7.55%, the PASI from 10.4 to 5.2 (<i>p</i> &lt; 0.0001). 43% of the patients with severe IGA achieved treatment success (IGA = 0/1 and ≥2-step improvement). 93% of the patients did not show any adverse events. <b><i>Conclusion:</i></b> The new Cal/BD foam showed a convincing efficacy and tolerability profile in daily practice, particularly in patients with severer disease manifestations.