cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25308076.v1
title: <b>Isolation, identification, and metabolic characterization of endophytic fungi from </b><b><i>Attalea geraensis</i></b><b> Barb. Rodr.</b>

description: This study aimed to characterize the endophytic fungi found on the leaves of <i>Attalea geraensis</i>, analyzing their synthesized chemical compounds.Our findings showed that a total of 225 leaf fragments were sampled, with fungal growth observed in 80 of them, representing a colonization frequency of 35.5%. Forty-three isolates were randomly selected and grouped into 29 morphogroups based on morphological characteristics. Sequences obtained from amplifying the 18S region of rDNA led to the identification of 17 endophytic isolates through BLAST analysis in the GenBank database. Phylogenetic analyses provided precise identification of various species and genera, including <i>Diaporthe macintoshii, Diaphorte</i> sp., <i>Phomopsis</i> sp., among others.Chemical analyses revealed the predominant presence of coumarins in all fungal extracts, albeit with variations in intensity. Tannins were detected in 14 out of 17 extracts, ranging from moderate to low intensity. Variations in metabolite classes were observed among different genera, indicating distinct adaptations for biotic interactions. PCA indicated that the first two Principal Components explained 82.84% of the total variance in metabolite class data. The factor distribution highlighted three accession groups, showing a high correlation between coumarin and tannin contents.These results suggest significant diversity of cultivable endophytic fungi in <i>Attalea geraensis</i> leaves, with important implications for understanding the ecology of these organisms and their metabolic potential.Chemical screening of the isolated fungi showed the presence of coumarins in all extracts, varying in intensity. Tannins were detected in 14 out of 17 extracts, with moderate to low intensity. Different genera exhibited distinct chemical profiles, suggesting adaptations for environmental interactions.Principal Component Analysis (PCA) demonstrated that the first two principal components accounted for 82.84% of the total variance in metabolite classes. The distribution of factors highlighted three accession groups, with high correlation between coumarin and tannin contents.Overall, the findings underscored the diversity of cultivable endophytic fungi associated with <i>Attalea geraensis</i> leaves and provided insights into their metabolic potential and ecological roles.
DOI: 10.6084/m9.figshare.15139145
title: Additional file 6 of WD40 repeat 43 mediates cell survival, proliferation, migration and invasion via vimentin in colorectal cancer

description: Additional file 6: Table S3. Apoptosis of DLD-1 cells detected by flow cytometry.
DOI: 10.6084/m9.figshare.15139145.v1
title: Additional file 6 of WD40 repeat 43 mediates cell survival, proliferation, migration and invasion via vimentin in colorectal cancer

description: Additional file 6: Table S3. Apoptosis of DLD-1 cells detected by flow cytometry.
DOI: 10.17632/f22xcgy7g4.1
title: Stratification of Patients with Coronary Artery Disease by Circulating Cytokines Profile: A Pilot Study

description: scientific research article for publishing
DOI: 10.6084/m9.figshare.15139151
title: Additional file 7 of WD40 repeat 43 mediates cell survival, proliferation, migration and invasion via vimentin in colorectal cancer

description: Additional file 7: Table S4. Apoptosis of HCT116 cells detected by flow cytometry.
DOI: 10.6084/m9.figshare.15139151.v1
title: Additional file 7 of WD40 repeat 43 mediates cell survival, proliferation, migration and invasion via vimentin in colorectal cancer

description: Additional file 7: Table S4. Apoptosis of HCT116 cells detected by flow cytometry.
DOI: 10.6084/m9.figshare.7274834
title: Additional file 2: of Identifying deer antler uhrf1 proliferation and s100a10 mineralization genes using comparative RNA-seq

description: Comparison of Differentially Expressed Genes from Fallow Deer RM and Human Mesenchymal Stem Cells. (XLSX 13100 kb)
DOI: 10.6084/m9.figshare.7274834.v1
title: Additional file 2: of Identifying deer antler uhrf1 proliferation and s100a10 mineralization genes using comparative RNA-seq

description: Comparison of Differentially Expressed Genes from Fallow Deer RM and Human Mesenchymal Stem Cells. (XLSX 13100 kb)
DOI: 10.6073/pasta/a71750d9c19fc7b36d5f69a68abb7138
title: SONGS Mitigation Monitoring: Experimental Reef Survey – Giant Kelp Size and Abundance

description: These data describe annual estimates of the size, fecundity, and abundance of giant kelp, Macrocystis pyrifera, at an artificial reef (Wheeler North Reef in Orange County, CA) and two natural reference reefs (San Mateo Kelp in Orange County, CA and Barn Kelp in San Diego County, CA). 
Data were collected from 2000 to 2004 as part of the experimental phase of the San Onofre Nuclear Generating Station (SONGS) kelp reef mitigation program. 
In the spring and fall of each year, divers collected data on the number of fronds &gt; 1 m tall, the amount of reproductive tissue, and the size of the holdfast for each giant kelp plant encountered along permanent transects at each reef and recorded the type of substrate to which each plant was attached.
DOI: 10.6084/m9.figshare.15139160
title: Additional file 9 of WD40 repeat 43 mediates cell survival, proliferation, migration and invasion via vimentin in colorectal cancer

description: Additional file 9: Table S5. Using MTT assays to detect OD490 and OD490/fold of DLD-1 cell line and corresponding shWDR43 and VIM-overexpression cell line.
DOI: 10.6084/m9.figshare.15139160.v1
title: Additional file 9 of WD40 repeat 43 mediates cell survival, proliferation, migration and invasion via vimentin in colorectal cancer

description: Additional file 9: Table S5. Using MTT assays to detect OD490 and OD490/fold of DLD-1 cell line and corresponding shWDR43 and VIM-overexpression cell line.
DOI: 10.5281/zenodo.10692128
title: Curated and harmonised transcriptomics datasets of interstitial lung disease patients

description: The datasets uploaded within this record contain transcriptomics data of interstitial lung disease patients retrieved from the NCBI Gene Expression Omnibus and European Nucleotide Archive (ENA) repositories. Overall, we retrieved 30 transcriptomics datasets, produced through both DNA microarrays and RNA-Sequencing technologies, along with relative meta-data tables. After data collection, all the datasets underwent meta-data curation and harmonisation, data quality check, and pre-processing with standardised procedures. Beside, data model was created in order to homogenise the phenotypic data enabling the comparability across the datasets. In addition, for every study included in this data release we provide tables of differentially expressed genes and co-expression network models of IPF samples and healthy counterparts deriving from both RNA-seq and DNA microarrays.
DOI: 10.5281/zenodo.10692129
title: Curated and harmonised transcriptomics datasets of interstitial lung disease patients

description: The datasets uploaded within this record contain transcriptomics data of interstitial lung disease patients retrieved from the NCBI Gene Expression Omnibus and European Nucleotide Archive (ENA) repositories. Overall, we retrieved 30 transcriptomics datasets, produced through both DNA microarrays and RNA-Sequencing technologies, along with relative meta-data tables. After data collection, all the datasets underwent meta-data curation and harmonisation, data quality check, and pre-processing with standardised procedures. Beside, data model was created in order to homogenise the phenotypic data enabling the comparability across the datasets. In addition, for every study included in this data release we provide tables of differentially expressed genes and co-expression network models of IPF samples and healthy counterparts deriving from both RNA-seq and DNA microarrays.
DOI: 10.15468/ep5hhg
title: 2016_Parc Naturel Régional du Luberon_2

description: 2015_PNRL_mammiferes:Parc Naturel Régional du Luberon
DOI: 10.15468/kct5mw
title: 2016_Parc Naturel Régional du Verdon_6

description: 2016_PNRV_mammiferes:Parc Naturel Régional du Verdon
DOI: 10.15468/u3g6fj
title: Données du plan de gestion stratégique du castor sur le bassin versant de la Bourbre - Etude du castor sur le bassin versant de la Bourbre

description: État des lieux de la présence du castor sur le bassin versant de la Bourbre
DOI: 10.17632/wnbxbysfp4.1
title: Exercise Stress Echocardiography of the Right Ventricle and Pulmonary Circulation

description: scientific research article for publishing
DOI: 10.15468/jjjnq6
title: 2018_Parc Naturel Régional du Luberon_4

description: 2017_PNRL_Mammiferes:Parc Naturel Régional du Luberon
DOI: 10.15468/z82x3a
title: 2020_DDT05_2

description: 2020_DDT05_N2000:DDT05 / données fournies par DDT05 en 2020
DOI: 10.15468/aen4g5
title: 2020_Agence MTDA_1

description: 2019_MTDA:Agence MTDA / données fournies par Agence MTDA en 2020
DOI: 10.15468/uvyqgp
title: 2022_SEGED_7

description: 2022_SEGED_4:SEGED / données fournies par SEGED en 2022
DOI: 10.15468/hqrhmk
title: 2015_SMAEMV_1

description: 2015_SMAEVM:SMAEMV / données fournies par SMAEMV en 2015
DOI: 10.15468/psctzr
title: 2020_Lombardi Ingénieurie_3

description: 2020_LombardiIngnenierie:Lombardi Ingénieurie
DOI: 10.15468/prpbw9
title: Plan de Gestion pluriannuel des opérations de dragages de l'UHC3 (canal de Roanne à Digoin et canal latéral à la Loire) - Mammifères - Inventaire non standardisé

description: Liste des mammifères observés dans le cadre des prospections de terrain réalisées au niveau de l'aire d'étude du Plan de Gestion Pluriannuel des Opérations de Dragages (PGPOD) de l'UHC3 (canal de Roanne à Digoin et canal latéral à la Loire)
DOI: 10.15468/88qyb8
title: 2022_Parc Naturel Régional du Luberon_1

description: 2021_PNRL:Parc Naturel Régional du Luberon
DOI: 10.15468/rctn4s
title: 2019_LPO PACA_4

description: 2018_LPO-PACA_Castor:LPO PACA:Plan National d'Actions Loutre - Campagnol amphibie  Castor
DOI: 10.15468/68qv6t
title: Suivi de mesures compensatoires RD45 - Autres mammifères 2019

description: Prospections d'autres mammifères que chiroptères en 2019
DOI: 10.15468/aa6f7d
title: 2020_ECO-MED_1

description: 2019_ESCOTA:ECO-MED / données fournies par ECO-MED en 2020
DOI: 10.15468/6ryvwm
title: Citas de castor en el País Vasco - Sistema de Información de la Naturaleza de Euskadi
DOI: 10.15468/3mf37p
title: 2015_SMAVD_4

description: 2014_SMAVD_oraison:SMAVD / données fournies par SMAVD en 2015
DOI: 10.15468/kpp6qs
title: 2015_NATURALIA_1

description: 2015_Naturalia:NATURALIA / données fournies par NATURALIA en 2015
DOI: 10.15468/79xfzn
title: 2020_Syndicat Mixte de Défense des Berges de l'Asse_1

description: 2019_SMDBA:Syndicat Mixte de Défense des Berges de l'Asse
DOI: 10.15468/bvnunn
title: RD 10 - Supression du passage à niveau n°27 (PN27) de Brignoud - Mammifères - Inventaire non standardisé.

description: Liste des mammifères observés dans le cadre des prospections de terrain réalisées au niveau de l'aire d'étude du projet de suppression du passage à niveau n°27 (PN27) de Brignoud. Localisation précise des observations de chaque individu.
DOI: 10.15468/duvk3p
title: 2015_SMAVD_3

description: 2014_SMAVD_pertuis:SMAVD / données fournies par SMAVD en 2015
DOI: 10.15468/4tbvru
title: Projet de Gravière à Autreville-sur-Moselle (54) - Données mammifères Autreville-sur-Moselle 2015

description: Données relatives aux mammifères présents sur le site en question se trouvant sur la commune d'Autreville-sur-Moselle, en 2015.
DOI: 10.15468/pdpq2b
title: 2015_SMAVD_5

description: 2014_SMAVD_chevalblanc2:SMAVD
DOI: 10.15468/s9ye6p
title: 2021_SYMBIODIV_1

description: 2020_SYMBIODIV_2:SYMBIODIV
DOI: 10.15468/c23pyh
title: 2014_Gaïadomo_3

description: 2014_GAIADOMO-3:Gaïadomo:Etudes environnementales dans le cadre du renforcement du système de protection de la commune des Mées
DOI: 10.15468/4dy2gp
title: 2020_SEGED_1

description: 2019_SEGED:SEGED / données fournies par SEGED en 2020
DOI: 10.15468/eeb24g
title: 2021_LPO PACA_24

description: 2021_LPO-PACA_PNA_castor_campagnol-amphibie:LPO PACA:PNA Loutre - Campagnol amphibie - Castor
DOI: 10.15468/6kyjf7
title: 2019_CD04_1

description: 2019_CD04_Naturalia:CD04 / données fournies par CD04 en 2019
DOI: 10.15468/mh6e9u
title: Seguimiento del castor en el País Vasco - Sistema de Información de la Naturaleza de Euskadi
DOI: 10.15468/ekmv9u
title: Confortement de l'endiguement rive droite de la Durance - JDD Faune - Complément - Projet confortement de la Durance

description: Inventaire de données de faune dans le cadre de l'étude complémentaire du projet de confortement de l’endiguement rive droite de la Durance
DOI: 10.15468/hbsq5g
title: 2022_SEGED_8

description: 2022_SEGED_5:SEGED / données fournies par SEGED en 2022
DOI: 10.15468/xnevev
title: Liaison autoroutière concédée entre Machilly et Thonon les Bains et suppression des passages à niveau N° 65 et 66 à Perrignier Haute-Savoie - Mammifères remarquables - Inventaire non standardisé - LPO74

description: Liste des mammifères remarquables observés de 2012 à 2016 par la LPO74 dans le secteur de l'aire d'étude du projet de liaison autoroutière concédée entre Machilly et Thonon-les-Bains et suppression des passages à niveau N°65 et 66 à Perrignier.
DOI: 10.15468/x8c7pd
title: Démantèlement barrage à Castor dans le contre-canal de Trémurs - Suivi Castor

description: Inventaire présence Castor
DOI: 10.15468/rppdny
title: 2015_SMAVD_1

description: 2014_SMAVD_chevalblanc:SMAVD
DOI: 10.15468/59ha3b
title: 2014_CG04_1

description: 2014_CG04:CG04 / données fournies par CG04 en 2014
DOI: 10.15468/6a9n66
title: 2021_SMAVD_1

description: 2021_SMAVD_NATURALIA:SMAVD
DOI: 10.15468/bencqg
title: 2014_Gaïadomo_2

description: 2014_GAIADOMO-2:Gaïadomo:Etudes dimpact et dincidence environnementales, dossier de déboisement. Collaboration entre lAgence Gaiadomo et la LPO PACA
DOI: 10.17632/n8wpjjvf2r.1
title: Benchmarking and improving the performance of variant-calling pipelines with RecallME

description: scientific research article for publishing
DOI: 10.6084/m9.figshare.20382081
title: Additional file 2 of Exploring spatiotemporal patterns of COVID-19 infection in Nagasaki Prefecture in Japan using prospective space-time scan statistics from April 2020 to April 2022

description: Additional file 2.
DOI: 10.6084/m9.figshare.20382081.v1
title: Additional file 2 of Exploring spatiotemporal patterns of COVID-19 infection in Nagasaki Prefecture in Japan using prospective space-time scan statistics from April 2020 to April 2022

description: Additional file 2.
DOI: 10.6084/m9.figshare.15139205
title: Additional file 4 of Ginsenoside Rb1 induces a pro-neurogenic microglial phenotype via PPARγ activation in male mice exposed to chronic mild stress

description: Additional file 4: Table S1. The concentration of GRb1 in hippocampus tissue was detected by LC-MS/MS technique in figure S1. Table S2. The F value and P value in multiple comparisons of Fig. 1. Table S3. The F value and P value in multiple comparisons of Fig. 2. Table S4. The F value and P value in multiple comparisons of Fig. 3. Tablse S5. The F value and P value in multiple comparisons of Fig. 4. Table S6. The F value and P value in multiple comparisons of figure S2. Table S7. The F value and P value in multiple comparisons of Fig. S3Table S8. The F value and P value in multiple comparisons of Fig. 5.
DOI: 10.6084/m9.figshare.15139205.v1
title: Additional file 4 of Ginsenoside Rb1 induces a pro-neurogenic microglial phenotype via PPARγ activation in male mice exposed to chronic mild stress

description: Additional file 4: Table S1. The concentration of GRb1 in hippocampus tissue was detected by LC-MS/MS technique in figure S1. Table S2. The F value and P value in multiple comparisons of Fig. 1. Table S3. The F value and P value in multiple comparisons of Fig. 2. Table S4. The F value and P value in multiple comparisons of Fig. 3. Tablse S5. The F value and P value in multiple comparisons of Fig. 4. Table S6. The F value and P value in multiple comparisons of figure S2. Table S7. The F value and P value in multiple comparisons of Fig. S3Table S8. The F value and P value in multiple comparisons of Fig. 5.
DOI: 10.17632/c8v2mx5vn4.1
title: Massively parallel implementation of iterative eigensolvers in large-scale plane-wave density functional theory

description: The Kohn-sham density functional theory (DFT) is a powerful method to describe the electronic structures of molecules and solids in condensed matter physics, computational chemistry and materials science. However, large and accurate DFT calculations within plane waves process a cubic-scaling computational complexity, which is usually limited by expensive computation and communication costs. The rapid development of high performance computing (HPC) on leadership supercomputers brings new opportunities for developing plane-wave DFT calculations for large-scale systems. Here, we implement parallel iterative eigensolvers in large-scale plane-wave DFT calculations, including Davidson, locally optimal block preconditioned conjugate gradient (LOBPCG), projected preconditioned conjugate gradient (PPCG) and the Chebyshev subspace iteration (CheFSI) algorithms, and analyze the performance of these algorithms in massively parallel plane-wave computing tasks. We adopt a two-level parallelization strategy that combines the message passing interface (MPI) with open multi-processing (OpenMP) parallel programming to handle data exchange and matrix operations in the construction and diagonalization of large-scale Hamiltonian matrix within plane waves. Numerical results illustrate that these iterative eigensolvers can scale up to 42,592 processing cores with high peak performance of 30% on leadship supercomputers to study the electronic structures of bulk silicon systems containing 10,648 atoms.
DOI: 10.6084/m9.figshare.20382082
title: Additional file 1 of Effect of breast milk with or without bacteria on infant gut microbiota

description: Additional file 1: Table S1. Relative abundance of human milk microbiota. Table S2. The relative abundance of the top 20 abundances at the genus level of the 5 groups.
DOI: 10.6084/m9.figshare.20382082.v1
title: Additional file 1 of Effect of breast milk with or without bacteria on infant gut microbiota

description: Additional file 1: Table S1. Relative abundance of human milk microbiota. Table S2. The relative abundance of the top 20 abundances at the genus level of the 5 groups.
DOI: 10.17632/6dvgzt2jmd.1
title: Supplemental Table S2. AEs.

description: AE, adverse event; CK, creatine kinase; JAK, Janus kinase 1; TEAE, treatment emergent adverse event. 
Comparisons of AEs between the JAK1 inhibitor and dupilumab groups (p was calculated using Pearson's chi-square test or Fisher's exact test). 
Data missing: 1n=40, 2 n=32.
DOI: 10.15468/g57r5d
title: Projet de remplacement du TS de la Lande-Inventaire Plantes Hôtes

description: Inventaire plantes hôtes fait par KARUM en 2019.
DOI: 10.15468/eh6w5f
title: Projet de remplacement du TS de la Lande-Relevés floristique

description: Relevé de flore patrimoniale fait par KARUM en 2019
DOI: 10.15468/ejnfwq
title: Occurrence Dataset for Plant Species in Pakhibitan, Ecopark, Newtown, North 24 Parganas, West Bengal, India, 2019

description: The Occurrence Dataset for Plant Species in Pakhibitan, Ecopark, Newtown, North 24 Parganas, West Bengal, India, 2019 is published by Nature Mates-Nature Club
The study area covers an area of about 3 acres and consists of different types of habitat like grassland, forest land and wetland.
Marshland of Pakhibitan is mostly covered with elephant grass (Typha sp.) surrounded by a forested patch. In the summer (April-May), the maximum temperature of the area reaches around 41°C. During the winter (December-February), the temperature drops to 9°C while the average rainfall is 1836.5 mm per year. The soil type is alluvial because it is located in the Indo-Gangetic plain.
This dataset includes all the plants recorded in the year 2019 . All the species are identified up to the species or genus level. A total of 127 plant species are recorded belonging to 49 families and 28 orders.
DOI: 10.15468/hvdqv9
title: Centrale solaire au sol de Chazé-Henry

description: Centrale solaire au sol située sur la commune d'Ombrée d'Anjou, dans le Maine-et-Loire (49), en région Pays de la Loire. La centrale est située au droit d'une ancienne mine (terrain dégradé), qui n'est plus exploitée depuis la fin des années 60, et a une puissance de 3 464 kWc.
DOI: 10.17632/46nyxdvnhp.1
title: Pain intensity profile after a single injection of the peptide analgesic taphalgin in traumatology and orthopedic patients: prospective observational cohort study

description: Excel table with primary data
DOI: 10.15468/2ryzuf
title: [SUIVI] 2022 Inventaire annuel du parc solaire de La batie montsaleon-Suivi de la flore pour le parc solaire de la Batie Montsaleon

description: Passage d'un expert botaniste sur l'emprise durant 3 jours, répartis de juin 2022 à août 2022. Relevés phytosociologiques sur certaines placettes prédéfinies, et relevés ciblés sur les taxons présentant un statut de protection ou de rareté/menace dont les stations de Rosier de France.
DOI: 10.3886/icpsr38666.v1
title: National Crime Victimization Survey: School Crime Supplement, [United States], 2022
title: Version 1

description: The primary purpose of the School Crime Supplement (SCS) is to obtain additional information about school-related victimizations so that policymakers; academic researchers; practitioners at the federal, state, and local levels; and special interest groups who are concerned with crime in schools can make informed decisions concerning policies and programs. The SCS asks questions related to students' experiences with, and perceptions of crime and safety at school, including preventive measures employed by schools; students' participation in after school activities; students' perception of school rules and enforcement of these rules; the presence of weapons, drugs, alcohol, and gangs in school; student bullying; hate-related incidents; and attitudinal questions relating to the fear of victimization at school. These responses are linked to the National Crime Victimization Survey (NCVS) survey instrument responses for a more complete understanding of the individual student's circumstances.
description: The data contain weights for creating national estimates.
description: Persons ages 12 to 18 who were in primary or secondary education programs leading to a high school diploma (elementary through high school), and who had been enrolled sometime during the 6 months prior to the interview, were administered the 2022 SCS questionnaire.
description: Datasets: 
DS1: National Crime Victimization Survey: School Crime Supplement, [United States], 2022
description: NCVS household members aged 12 through 18. Smallest Geographic Unit: Region
description: face-to-face interview; telephone interview
DOI: 10.5281/zenodo.10179219
title: Code and data to support 'Street view imagery for built environment auditing: a systematic review'

description: Code and data to support  the manuscript entitled 'Street view imagery for built environment auditing: a systematic review'
DOI: 10.5281/zenodo.10688846
title: Code and data to support 'Street view imagery for built environment auditing: a systematic review'

description: Code and data to support  the manuscript entitled 'Street view imagery for built environment auditing: a systematic review'
DOI: 10.5281/zenodo.10688868
title: Code and data to support 'Street view imagery for built environment auditing: a systematic review'

description: Code and data to support  the manuscript entitled 'Street view imagery for built environment auditing: a systematic review'
DOI: 10.5281/zenodo.8381348
title: Code and data to support 'Street view imagery for built environment auditing: a systematic review'

description: Code and data to support the manuscript entitled 'Street view imagery for built environment auditing: a systematic review'