cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21227/wysp-gt69
title: Wearable Physiological and Blood Pressure Measurements During Activities of Daily Living

description: The purpose of this data collection was for the validation of a cuffless blood pressure estimation model during activities of daily living. Data were collected on five young healthy individuals (four males, age 28 ± 6.6 yrs) of varied fitness levels, ranging from sedentary to regularly active, and free of cardiovascular and peripheral vascular disease. Arterial blood pressure was continuously measured using finger PPG (Portapres; Finapres Medical Systems, the Netherlands). The Astroskin wearable body metrics vest (Carré Technologies Inc., Canada) was used for electrocardiogram (ECG), photoplethysmogram (PPG), and tri-axial acceleration measurements. The PAT was calculated internally at 256 Hz. An iPhone SE was fixed to the thigh to record the orientation to identify the body posture.
DOI: 10.23650/data.h.2017.nga121474.k1.1.1
title: 中华人民共和国1:250万数字地质图空间数据库
title: People 's Republic of China 1: 2.5 million Digital Geological Map Spatial Database

description: People's Republic of China 1: 2.5 million digital geological map space database, in 2000 project, completed in 2001, which lasted two years. In addition to the main database, the database is composed of geo-map database and geographic content attribute library, geological content attribute library, color library, linear library, pattern library, symbol library and legend library. With the geological content, administrative area, arbitrary space and geographical content of the search and automatic output mapping, automatic drawing of geological symbols, automatic legend and other functions.1: 2.5 million scale digital geological map of the completion of the spatial database to make up for the gaps in the field. It is of great significance to show and improve the degree of geological research in mainland China, to summarize and reflect the overall characteristics of China's geology, and to provide basic geological data for economic construction, land and resources management, geological survey and so on.
DOI: 10.26036/cnp0005998
title: Resequencing of 69 Wild Soybeans

description: The project included resequencing information for 69 soybean wild resources
DOI: 10.26093/cds/vizier.51620140
title: The SOS. VII. UBVI photometry of open cluster IC 1590

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal with title 'The Sejong Open cluster Survey (SOS).VII. A photometric study of the young open cluster IC 1590.' (bibcode: 2021AJ....162..140K)
DOI: 10.5281/zenodo.10592244
title: Uncertainty analysis of the plasma impedance probe

description: This is the code and data associated with the article: "Uncertainty analysis of the plasma impedance probe"
DOI: 10.5281/zenodo.12537838
title: Assessment of error variation in high-fidelity two-qubit gates in silicon

description: The data and the analysis files for the paper titled: "Assessment of the errors of high-fidelity two-qubit gates in silicon quantum dots" https://arxiv.org/abs/2303.04090 Analysis files written in python and in matlab.
DOI: 10.5281/zenodo.13756055
title: Supplemental materials for "Boosting Barlow Twins reduced order modeling for machine learning-based surrogate models in multiphase flow problems"

description: Supplemental materials for "Boosting Barlow Twins reduced order modeling for machine learning-based surrogate models in multiphase flow problems" in Water Resources Research. Detailed information is available in readme.md.
DOI: 10.5281/zenodo.5886608
title: A Deep Learning-Based Hybrid Model of Global Terrestrial Evaporation

description: This repository contains the datasets used in the research article "A Deep Learning-Based Hybrid Model of Global Terrestrial Evaporation". The repository contains the following files: 1) Input - contains all the processed input used for training the deep learning models and the datasets used for creating the figures in the article. 2) Output - contains the final deep learning models and the outputs (evaporation and transpiration stress factor) outputs from the hybrid model developed in the study. Formats: All scripts are in the programming language Python. The datasets are in HDF5 and NetCDF file formats. The codes related to the research article and deep learning model are available in the following repository: https://github.com/akashkoppa/StressNet
DOI: 10.5281/zenodo.835855
title: Rdp Lsu Taxonomic Training Data Formatted For Dada2  (Trainingset 11)

description: #Format RDP taxonomic training set for DADA2<br>
#1  Wrangle the RDP trainingsets and unaligned data into the downloads folder by executing this from a terminal and move the file somewhere with &gt;30GB free<br>
wget https://sourceforge.net/projects/rdp-classifier/files/RDP_Classifier_TrainingData/RDPClassifier_fungiLSU_trainsetNo11_rawtrainingdata.zip/download<br>
wget http://rdp.cme.msu.edu/download/current_Fungi_unaligned.fa.gz<br>
#2  Unzip the trainingset file and replace Us with Ts in the fasta by executing in terminal<br>
awk 'NR%2==0 {gsub(/[uU]/,"T"); print} NR%2==1' /media/lauren/96BA-19E6/RDPClassifier_fungiLSU_trainsetNo11_rawtrainingdata/fungiLSU_train_012014.fa &gt; /media/lauren/96BA-19E6/RDPClassifier_fungiLSU_trainsetNo11_rawtrainingdata/fungiLSU_train_012014_lsu_fixed_v2.fa<br>
#3  Summon the dada2 pkg<br>
library(dada2);packageVersion("dada2")<br>
#4  Transform the DADA2 formatted training fastas<br>
path&lt;-"/media/lauren/96BA-19E6/RDPClassifier_fungiLSU_trainsetNo11_rawtrainingdata"<br>
dada2:::makeTaxonomyFasta_RDP(file.path(path, "fungiLSU_train_012014_lsu_fixed_v2.fa"), file.path(path, "fungiLSU_taxid_012014.txt"),"/media/lauren/96BA-19E6/Upload/RDP_LSU_fixed_train_set_v2.fa",compress=FALSE)<br>
dada2:::makeSpeciesFasta_RDP("/media/lauren/96BA-19E6/RDPClassifierLSU/current_Fungi_unaligned.fa", "/media/lauren/96BA-19E6/Upload/rdp_species_assignment_LSU_v2.fa", compress=FALSE)

#5 Make the compressed DADA2 formatted training fastas in gz and zip format<br>
dada2:::makeTaxonomyFasta_RDP("/media/lauren/96BA-19E6/RDPClassifier_fungiLSU_trainsetNo11_rawtrainingdata/fungiLSU_train_012014_lsu_fixed_v2.fa", file.path(path, "fungiLSU_taxid_012014.txt"),"/media/lauren/96BA-19E6/Upload/RDP_LSU_fixed_train_set_v2.fa.gz",compress=TRUE)<br>
dada2:::makeTaxonomyFasta_RDP("/media/lauren/96BA-19E6/RDPClassifier_fungiLSU_trainsetNo11_rawtrainingdata/fungiLSU_train_012014_lsu_fixed_v2.fa", file.path(path, "fungiLSU_taxid_012014.txt"),"/media/lauren/96BA-19E6/Upload/RDP_LSU_fixed_train_set_v2.fa.zip",compress=TRUE)<br>
dada2:::makeSpeciesFasta_RDP("/media/lauren/96BA-19E6/RDPClassifierLSU/current_Fungi_unaligned.fa", "/media/lauren/96BA-19E6/Upload/rdp_species_assignment_LSU_v2.fa.gz", compress=TRUE)<br>
dada2:::makeSpeciesFasta_RDP("/media/lauren/96BA-19E6/RDPClassifierLSU/current_Fungi_unaligned.fa", "/media/lauren/96BA-19E6/Upload/rdp_species_assignment_LSU_v2.fa.zip", compress=TRUE)
description: This work was supported by NIEHS grant P42-ES010356
DOI: 10.6084/m9.figshare.11980500
title: Metadata record for: Version 4 of the CRU TS monthly high-resolution gridded multivariate climate dataset

description: This dataset contains key characteristics about the data described in the Data Descriptor Version 4 of the CRU TS monthly high-resolution gridded multivariate climate dataset. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.25989040
title: Magnetic records of CN section.xlsx

description: Dynamic Coupling Between Intensified Physical Erosion and Asian Dust Activity Under Late Cenozoic Global Cooling
DOI: 10.6084/m9.figshare.27103786
title: Data Package for Perron et al. (Nature Communications, 2024)

description: Supplementary data package (processed rnaSeq data) for Perron et al. (Nature Communications, 2024)
DOI: 10.6084/m9.figshare.27201081
title: Supplementary Material for: Evaluating the Safety of Stent-Assisted Endovascular Treatment for Unruptured Cerebral Aneurysms in Older Adults: Emphasizing the Role of Antiplatelet Therapy

description: Introduction: This study aimed to compare the outcomes and safety in patients aged ≥75 years and those aged &lt;75 years who underwent stent-assisted endovascular treatment for unruptured cerebral aneurysms, specifically focusing on perioperative antiplatelet therapy (APT).
Methods: This multicenter retrospective study comprised patients who underwent stent-assisted coiling (SAC) or flow diverter stent (FDS) placement for unruptured cerebral aneurysms. The primary outcome was defined as the composite outcomes of perioperative thromboembolic events, bleeding events, or death. 
Results: Among 632 patients, 533 (84.3%) were aged &lt;75 years and 99 (15.6%) were aged ≥75 years. No significant differences were observed in the dual APT duration. The primary outcome occurred in 14.3% of patients aged &lt;75 years and in 14.1% of those aged ≥75 years, with no significant difference (P=1.0). The composites of the primary outcome, including thromboembolic events, bleeding events, and death differed insignificantly. Similar findings were observed when the primary outcomes for SAC (12.7% vs. 11.5%, P=0.95) and FDS (17.5% vs. 18.4%, P=1.0) were analyzed. The 30-day, 1-year, and 2-year cumulative event-free survival rates for the primary outcome were 89.5, 87.2%, and 85.2%, respectively, in patients aged &lt;75 years, and 90.9%, 88.7%, and 87.0%, respectively, in those aged ≥75 years. These trends were similar (log-rank test, P=0.92). 
Conclusion: No significant differences were observed in the rates of the primary outcomes between patients aged &lt;75 years and those aged ≥75 years. Therefore, refraining from stent-assisted treatment for unruptured aneurysms based solely on age might be inappropriate.
DOI: 10.6084/m9.figshare.27636237
title: Supplementary Material for: Exploring the spatial distribution of interstitial cells in kidney tissue

description: Introduction: Interstitial cells are crucial to the development of kidney structure and function, although the mechanism underlying their role in it remains unclear to date. Our previous study identified cell clusters in human fetal kidney tissue, and we further analyzed the interstitial cell cluster within this context. 
Methods: We extracted the barcoded cDNA from tissue samples and prepared spatial transcriptome libraries. Sequencing data was quality-checked, normalized, and clusters were identified using Seurat. Single-cell and spatial data were integrated using MIA and cell types were deconvoluted. DEGs in interstitial cells were identified and functionally annotated using DAVID. CellPhoneDB was used to predict ligand-receptor interactions between cell types.
Results: The results of the present study revealed that this cluster of interstitial cells appeared to be scattered in the junction between the cortical and medullary regions. The subsequent KEGG pathway analysis revealed that the differentially expressed genes (DEGs) in this cluster of interstitial cells were involved in the WNT signaling pathway. The Gene Ontology (GO) analysis revealed that these DEGs were involved in multiple pathways associated with kidney development, with six of the genes (NKD2, TCF21, WNT5A, WNT4, MDK, and SFRP1) associated with kidney development exhibiting significant upregulation. Accordingly, it was inferred that these interstitial cells might be involved in regulating epithelial cell differentiation, ureteral bud development, and morphogenesis. The subsequent cell-cell communication analysis revealed that the cellular crosstalk was primarily regulated mainly by ligand-receptor pairs. Additionally, 17 genes reported to be associated with kidney disease were focused on, and these genes were found to be predominantly expressed in a single cell type. 
Conclusion: In summary, the present study revealed the characteristics of a previously identified cluster of interstitial cells in the kidney tissue, thereby providing fresh insights into the process of kidney development.
DOI: 10.6084/m9.figshare.27641643
title: Supplementary Material for: Potential Cognitive Decline Linked to Electronegative L5 in Type 2 Diabetes: A Holo-Hilbert Spectral Analysis

description: Introduction: Patients with type 2 diabetes mellitus (T2DM) have an increased risk of cognitive impairment. In this study, we investigated the effect of L5—an electronegative subfraction of low-density lipoprotein cholesterol (LDL-C)—on the cognitive function of patients with T2DM.
Methods: This cross-sectional study included 68 patients with T2DM: 15 with normal cognitive function, 39 with mild cognitive impairment (MCI), and 14 with Alzheimer disease (AD). Cognitive evaluation was performed using the Cognitive Abilities Screening Instrument. We developed a new method—Holo-Hilbert spectral analysis (HHSA)—for analyzing electroencephalography signals. Using HHSA, we investigated the effects of L5 on patients’ neural activity.
Results: Our findings suggested that a higher percentage of L5 in LDL-C (L5%) was independently associated with increased risks of MCI and AD in patients with T2DM. A negative correlation was observed between serum L5% and cognitive performance, particularly in the concentration subdomain, in patients with MCI. HHSA revealed that an elevated serum L5% value was correlated with an increase in low-frequency neural oscillations but a reduction in high-frequency oscillations in patients with MCI. However, no correlation was observed between L5, cognitive performance, and neural activity in patients with normal cognitive function or AD.
Conclusion: Our findings demonstrate L5 to be an efficient biomarker and electroencephalography/HHSA to be an innovative approach for assessing cognitive function in patients with T2DM. L5 may affect frontal lobe function, leading to concentration deficits. The correlation between L5 and cognitive impairment appears to vary depending on the stage of neurodegeneration.
DOI: 10.6084/m9.figshare.27645486
title: Supplementary Material for: Is poor self-rated health associated with higher caries experience in adults? The HUNT4 Oral Health Study

description: Introduction: The association between lower socioeconomic status and a higher risk of dental caries is well established, but the independent association between general health status and dental caries on a population level is less investigated. The aim of this study was to assess the association between self-rated general health and caries experience in an adult Norwegian population and to assess if the associations were modified by age and sex. 
Methods: Data was collected as part of the Trøndelag Health Study (HUNT4) conducted 2017-2019 and a randomly selected subsample (20%) were invited for the HUNT4 Oral Health Study. This cross-sectional study included 4,880 dentate participants aged 19-94 years (response rate 67%). Participants underwent clinical and radiographic oral examinations and caries experience was measured by numbers of decayed (DT), missing (MT), and filled teeth (FT), DMFT index. The DT component consisted of primary and secondary caries in dentine, cavitated root caries and remaining roots. Questionnaires were used to assess self-rated general health and socioeconomic position, denoted by education, household income and employment status. Associations between self-rated health and caries experience (DMFT) and components (DT, MT, and FT) were assessed using negative binomial regression models. Ratios of means (RMs) with 95% confidence intervals (CI) for the associations were estimated, adjusting for socioeconomic position.
Results: Individuals with poor self-rated general health had a 29% higher mean number of MT (RM 1.29 (95%CI 1.13-1.46)), a 22% higher mean number of DT (RM 1.22 (95%CI 1.07-1.39)), and a 7% higher mean number of DMFT (RM 1.07 (95%CI 1.04-1.11)) than individuals reporting very good health. Age stratified analyses presented a more pronounced association between self-rated health and caries experience for individuals below the age of 55 years than for those 55 years or older. Similarly, the association was more evident for women, with significantly higher mean values for DMFT, MT and FT among women reporting poor health. 
Conclusions: The present study demonstrated an independent association between poor self-rated health and a higher burden of caries experience, adjusted for education, income and employment status. The association was stronger for women and individuals below the age of 55 years. These findings add new evidence in understanding caries inequalities through self-rated health.
DOI: 10.6084/m9.figshare.6025748
title: dx.doi.org/10.6084/m9.figshare.6025748

description: Source data for the figures of the article
DOI: 10.15468/dl.dkq3yt
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Xanthomonas cassavae, Xanthomonas cassavae, Xanthomonas cassavae, Xanthomonas cassavae, Xanthomonas cassavae, Xanthomonas cassavae, Xanthomonas cassavae (Wiehe & Dowson, 1953) Vauterin et al., 1995, 172338935, Xanthomonas cassavae (ex Wiehe & Dowson, 1953) Vauterin et al., 1995)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009803-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11613487
title: Supporting data of "Temperature-dependent dynamics of energy stores in Drosophila" article

description: The data generated in the study: Knoblochová, D., Dharanikota, M., Gáliková, M., and Klepsatel, P.: Temperature-dependent dynamics of energy stores in Drosophila.
DOI: 10.15468/dl.gf6qhm
title: Occurrence Download

description: A dataset containing 4250 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "DatasetKey is NSW BioNet Atlas",
 "Month is July",
 "TaxonKey is Animalia",
 "Year 2023-2023"
 ]
}

 The dataset includes 4250 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009805-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n7hq46
title: Occurrence Download

description: A dataset containing 4767 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pectinidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4767 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009804-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u5ktg9
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acremonium strictum, Acremonium strictum W.Gams, Acremonium strictum W.Gams, Acremonium strictum W.Gams, Acremonium strictum W.Gams, 1971, Acremonium strictum W.Gams, 1971, Acremonium strictum W. Gams, Acremonium strictum W. Gams, Acremonium strictum W. Gams, Acremonium strictum W. Gams, 1971, Galega orientalis Lam., Helminthosporium solani Durieu & Mont)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 28 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009806-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60956/9w9z-s666
title: Microsporidia (Encephalitozoon cuniculi) in Patients with Degenerative Hip and Knee Disease, Czech Republic

description: <p>Total joint arthroplasty is a commonly used surgical procedure<br />in orthopedics. Revision surgeries are required<br />in &gt;10% of patients mainly because of prosthetic joint<br />infection caused by bacteria or aseptic implant loosening<br />caused by chronic inflammation. Encephalitozoon<br />cuniculi is a microsporidium, an obligate intracellular<br />parasite, capable of exploiting migrating proinflammatory<br />immune cells for dissemination within the host. We<br />used molecular detection methods to evaluate the incidence<br />of E. cuniculi among patients who had total hip or<br />knee arthroplasty revision. Out of 49 patients, E. cuniculi<br />genotypes I, II, or III were confirmed in joint samples<br />from 3 men and 2 women who had implant loosening.<br />Understanding the risks associated with the presence of<br />microsporidia in periprosthetic joint infections is essential<br />for proper management of arthroplasty. Furthermore,<br />E. cuniculi should be considered a potential contributing<br />cause of joint inflammation and arthrosis.<br /></p>
DOI: 10.15468/dl.tcrjmy
title: Occurrence Download

description: A dataset containing 6810 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Lactuca indica L.",
 "Year 1960-2024"
 ]
}

 The dataset includes 6810 records from 176 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009807-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5zbfav
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Pinellia integrifolia N.E.Br.)"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009809-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e6t9vr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Diaporthe phaseolorum (Cooke & Ellis) Sacc., Diaporthe phaseolorum Athow & Caldwell)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009811-241107131044228/datasets/export for details.
DOI: 10.15468/dl.xhrjqk
title: Occurrence Download

description: A dataset containing 315576 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Typha latifolia L."
 ]
}

 The dataset includes 315576 records from 2174 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009796-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.