cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5719481
title: Ketamine reverses stress-induced behavior by restoring excitatory synapses in the basolateral amygdala-projecting infralimbic prefrontal cortex neurons

description: Coding and data demo
DOI: 10.3886/e112670v1-102387
title: Replication data for: The China Syndrome: Local Labor Market Effects of Import Competition in the United States

description: We analyze the effect of rising Chinese import competition between 1990 and 2007 on US local labor markets, exploiting cross- market variation in import exposure stemming from initial differences in industry specialization and instrumenting for US imports using changes in Chinese imports by other high-income countries. Rising imports cause higher unemployment, lower labor force participation, and reduced wages in local labor markets that house import-competing manufacturing industries. In our main specification, import competition explains one-quarter of the contemporaneous aggregate decline in US manufacturing employment. Transfer benefits payments for unemployment, disability, retirement, and healthcare also rise sharply in more trade-exposed labor markets.
DOI: 10.6073/pasta/9e9de0492fd2697adc855894def306a6
title: Bisley Watershed 3 and Quebrada Prieta Algae Monitoring

description: The LTER is conducting annual monitoring of Algae, Chlorophyll a, benthic organic matter, and benthic inorganic matter in order to document baseline stream characteristics. These data may be used to examine effects of disturbances such as hurricanes on stream ecosystems.
DOI: 10.7284/145166
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise NBP0901 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145167
title: Expendable Probe data collected during research cruise NBP0901 using a Sippican MK12 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145168
title: GNSS (Global Navigation Satellite System) data collected during research cruise NBP0901 using a Furuno GP-330B instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145170
title: Gyrocompass data collected during research cruise NBP0901 using a Yokogawa CMZ700B instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145171
title: INS (Inertial Navigation System) data collected during research cruise NBP0901 using a Kongsberg Seapath 200 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145140
title: Multibeam Echosounder data collected during research cruise NBP0901 using a Kongsberg EM122 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.3886/e130626v1
title: Data and Code for: Optimal Targeted Lockdownsin a Multi-Group SIR Model

description: This is the code repository for "Optimal Targeted Lockdowns in a Multi-Group SIR Model", (AER Insights: Revision). <br><br>DATA <br><br>The fatality parameters used in computation are based on Ferguson, NM, D. Laydon, G. Nedjati-Gilani, N. Imai, K Ainslie, M. Baguelin, S. Bhatia, A. Boonyasiri, Z. Cucunubá, G. Cuomo-Dannenburg, and A. Dighe, “Impact of non-pharmaceutical interventions (NPIs) to reduce COVID-19 mortality and healthcare demand,” March 2020. Imperial College COVID-19 Response Team. As commented in the paper, these parameters are in line with those from South Korea and the Diamond Princess cruise (see<b> </b>Acemoglu D., V. Chernozhukov, I. Werning, and M. D. Whinston, “A multi-risk SIR model with optimally targeted lockdown,” Technical Report, National Bureau of Eco- nomic Research 2020, for details and discussion). The latter data is not used in the paper.<br><br><br>COMPUTATIONAL CODE FILES. <br><br>The code files are the Python Notebooks: <br><br>Optimal3GPolicy-v6.ipynb produces Figures 3, 4, 5, A1, A3, A4, A5.2. <br>Optimal3G-SEIR-v6.ipynb produces Figures A6 an A8.3. <br>Optimal4GPolicy-OldWorking-v6.ipynb produces Figure A2.4. <br>Optimal3G-CustomContactMatrix.ipynb produces Figure A7. <br><br>The code is available under a Creative Commons Non-commercial license. <br><br>EXECUTION <br><br>We executed the files as follow: We have uploaded these notebooks to Google Colab Cloud https://colab.research.google.com/ and executed them online in the cloud.<br><br>To execute the code, the user can follow a similar approach. The user will need to modify the notebook cell that mounts the Google drive and supply her our own default paths for where to store computational output, figures: The path "/content/drive/My Drive/Covid/Lockdown/" has to be modified to user’s working folder. In that folder, the user must create the following subfolders: models/, figs/, summaryres/, results/. This is needed to make sure that the code executes properly. Alternatively, the code can be executed on a local machine with a local Python installation. <pre>REQUIREMENTS We used Google Colab Cloud https://colab.research.google.com/ with default runtime hardware setting to execute the notebooks. Execution via local installation will require Python 3.6.1 or higher and Gekko Optimization suite (ver 1.1.0; see https://gekko.readthedocs.io/en/latest/ ). </pre> <br>ALTERNATIVE SUGGESTED EXECUTION <br><br>The Python notebooks can be accessible online directly at: <br><br>https://colab.research.google.com/drive/16zhsso-NzNbxn9C_MMP4lqzdVA2N-xxt?usp=sharing https://colab.research.google.com/drive/1Ogi15qeU0vVm1eUq66c3B7M1nPiL-ZtE?usp=sharinghttps://colab.research.google.com/drive/15RYgCU6esEdOfOSA6LK7kRV5BZmQmVD3?usp=sharing https://colab.research.google.com/drive/1AvOOsR_3w-r0eciToP758dLkQRdSVm6H?usp=sharing <br><br>They can be cloned and executed directly in Google Colab Cloud.
DOI: 10.6084/m9.figshare.14330795.v8
title: An Immune Cell Atlas Reveals Dynamic COVID-19 Specific Neutrophil Programming Amendable to Therapy

description: SARS-CoV-2 is a novel coronavirus that causes acute respiratory distress syndrome (ARDS) and death. Innate immune cells are critical for host defense but are also the primary drivers of acute respiratory distress syndrome. The relationships between innate cellular responses in ARDS resulting from COVID-19 compared to other causes of ARDS, such as bacterial sepsis is unclear. Moreover, the beneficial cellular effects of dexamethasone therapy during severe COVID-19 remains speculative but understanding their mechanistic effects could improve rationally targeted drug design. We discovered that compared to bacterial septic ARDS, COVID-19 induced distinct neutrophil polarization characterized by either interferon (IFN) or prostaglandin (PG) active states. IFN polarization required the transcriptional regulators PRDM1, STAT1 and IRF1 while prostaglandin polarization was induced by E2F4. Bacterial ARDS neutrophils upregulated antibacterial molecules such as PLAC8 via STAT5b and demonstrated conventional transcription factors CEBPA and CEBPB. Steroid therapy rapidly altered IFN polarization, downregulated interferon responsive genes, and induced immunoretrained neutrophils withelevations of the decoy IL-1R2 regulatory receptor. Steroids induced the emergence of immature neutrophils expressing immunosuppressive molecules ARG1 and ANXA1. Moreover, steroids remodeled global cellular communication hierarchies by changing neutrophils from information receivers into information providers. Importantly, male patients had higher proportions of IFN-active neutrophils and a greater degree of steroid induced attenuation of cellular polarization. Indeed, the highest proportion of IFN-active neutrophils was associated with mortality. These results define neutrophil states unique to COVID-19 when contextualized to other life-threatening infections, thereby enhancing the relevance of our findings at the bedside. Furthermore, the clinical benefits of dexamethasone therapy are molecularly defined, and this information highlights essential molecular pathways to which improved therapeutic targeting can now be conceived.<br>
DOI: 10.5281/zenodo.5722031
title: Evaluating the relevance of sequence conservation in the prediction of pathogenic missense variants.

description: Datasets: <em>CommonClinvar</em> and <em>NewClinvar</em> Authors: Emidio Capriotti and Piero Fariselli Article: Evaluating the relevance of sequence conservation in the prediction of pathogenic missense variants.<br>
description: This work was supported by the PRIN project, "Integrative tools for defining the molecular basis of the diseases: Computational and Experimental methods for Protein Variant Interpretation" of the Ministero Istruzione, Università e Ricerca (PRIN201744NR8S).
DOI: 10.5281/zenodo.5722030
title: Evaluating the relevance of sequence conservation in the prediction of pathogenic missense variants.

description: Datasets: <em>CommonClinvar</em> and <em>NewClinvar</em> Authors: Emidio Capriotti and Piero Fariselli Article: Evaluating the relevance of sequence conservation in the prediction of pathogenic missense variants.<br>
description: This work was supported by the PRIN project, "Integrative tools for defining the molecular basis of the diseases: Computational and Experimental methods for Protein Variant Interpretation" of the Ministero Istruzione, Università e Ricerca (PRIN201744NR8S).
DOI: 10.3886/e127341
title: Data and Code for Optimal Lockdown in a Commuting Network

description: We study optimal dynamic lockdowns against Covid-19 within a commuting network. Our framework integrates canonical spatial epidemiology and trade models, and is applied to cities with varying initial viral spread: Seoul, Daegu and NYC-Metro. Spatial lockdowns achieve substantially smaller income losses than uniform lockdowns. In NYM and Daegu—with large initial shocks—the optimal lockdown restricts inflows to central districts before gradual relaxation, while in Seoul it imposes low temporal but large spatial variation. Actual commuting reductions were too weak in central locations in Daegu and NYM, and too strong across Seoul<br>.
description: Districts in Seoul and Daegu, South Korea; Counties in New York Metropolitan Area, USA .
DOI: 10.3886/e127341v1
title: Data and Code for Optimal Lockdown in a Commuting Network

description: We study optimal dynamic lockdowns against Covid-19 within a commuting network. Our framework integrates canonical spatial epidemiology and trade models, and is applied to cities with varying initial viral spread: Seoul, Daegu and NYC-Metro. Spatial lockdowns achieve substantially smaller income losses than uniform lockdowns. In NYM and Daegu—with large initial shocks—the optimal lockdown restricts inflows to central districts before gradual relaxation, while in Seoul it imposes low temporal but large spatial variation. Actual commuting reductions were too weak in central locations in Daegu and NYM, and too strong across Seoul<br>.
description: Districts in Seoul and Daegu, South Korea; Counties in New York Metropolitan Area, USA .
DOI: 10.25934/pr00007538
title: Dummy request for 4949 data transfer

description: N/A
DOI: 10.6084/m9.figshare.11295047
title: Mass tourism underwater: a segmentation approach to motivations of scuba diving holiday tourists

description: Scuba diving is an increasingly popular activity in resort destinations worldwide, providing tourists a more active experience in their holiday. By following the Push and Pull Theory, this study examines the scuba diving motivations of holiday tourists. Whilst of substantial importance for the practice of the activity, host marine destinations and broader ocean literacy, this an under-researched topic in the tourism literature. Data were collected from a comprehensive data set of holiday tourists who participated scuba diving in Kemer, Antalya-Turkey. <i>Exploration & excitement, personal development</i>, and <i>socialisation & challenge</i> were identified as the push motivations, while <i>tourism & diving offerings</i>, <i>safety & accessibility</i>, <i>ancillary attributes</i>, <i>new area</i>, and <i>unspoiled diving destination</i> were determined as the pull motivations. Moreover, cluster analysis revealed four groups who had various motivations to participate scuba diving, namely <i>Enthusiastic Positivists, Youthful Hedonists, Amateur Explorers</i>, and <i>Single Regulars.</i> Findings of the research were discussed along with their theoretical and managerial implications.
DOI: 10.34740/kaggle/dsv/2844882
title: OS Performance counters for malware detection
DOI: 10.5517/ccdc.csd.cc26r167
title: CCDC 2047928: Experimental Crystal Structure Determination

description: Related Article: Na Lin, Lei Huang, Huan-huan Ding, Yue Zhang, Wen-jing Dong, Bin-yuan Xia, Wen-sheng Ren, Dong Zhao|2021|Org.Chem.Front.|8|6657|doi:10.1039/D1QO01387D
DOI: 10.5517/ccdc.csd.cc272g2w
title: CCDC 2057937: Experimental Crystal Structure Determination

description: Related Article: Zhanqun Liang, Kang Lv, Shaofang Zhou, Changlei Zhu, Xiaoguang Bao|2021|Org.Chem.Front.|8|6499|doi:10.1039/D1QO01076J
DOI: 10.5517/ccdc.csd.cc2777lb
title: CCDC 2062541: Experimental Crystal Structure Determination

description: Related Article: Lai Li, Xiaohong Peng, Jianmei Lu, Xuefeng Jiang|2021|Org.Chem.Front.|8|6642|doi:10.1039/D1QO01288F
DOI: 10.5517/ccdc.csd.cc26pg7m
title: CCDC 2046410: Experimental Crystal Structure Determination

description: Related Article: Lifang Lin, Shan Chen, Zhihao Lu, Li Xu|2021|Inorg.Chem.Front.|8|5086|doi:10.1039/D1QI00872B
DOI: 10.5517/ccdc.csd.cc27t3z5
title: CCDC 2079727: Experimental Crystal Structure Determination

description: Related Article: Yueying Zhu, Jiaming Gu, Xueyue Yu, Borong Zhang, Guanghua Li, Jiantang Li, Yunling Liu|2021|Inorg.Chem.Front.|8|4990|doi:10.1039/D1QI00960E
DOI: 10.5517/ccdc.csd.cc27vnc4
title: CCDC 2081196: Experimental Crystal Structure Determination

description: Related Article: Rebeca Lara, Gonzalo Millán, M. Teresa Moreno, Elena Lalinde, Elvira Alfaro-Arnedo, Icíar P. López, Ignacio M. Larráyoz, José G. Pichel|2021|Chem.-Eur.J.|27|15757|doi:10.1002/chem.202102737
DOI: 10.5517/ccdc.csd.cc27x33d
title: CCDC 2082583: Experimental Crystal Structure Determination

description: Related Article: Yury V. Torubaev, Ivan V. Skabitsky, Anton V. Rozhkov, Bartomeu Galmés, Antonio Frontera, Vadim Yu. Kukushkin|2021|Inorg.Chem.Front.|8|4965|doi:10.1039/D1QI01067K
DOI: 10.5281/zenodo.5721632
title: Dose coefficients for organ dosimetry in tomosynthesis imaging of adults and pediatrics across diverse protocols

description: A database of organ dose coefficients using MC simulations for a clinically representative virtual population of adult and pediatric XCAT patient models over an expanded set of 21 exam protocols in digital tomosynthesis.
DOI: 10.5066/p98hocl6
title: Time series of expected livestock forage biomass in the semi-arid grasslands of the western U.S. (2000-2018)

description: Management and disturbances have significant effects on grassland forage production. When using satellite remote sensing to monitor climate impacts such as drought stress on annual forage production, minimizing these effects provides a clearer climate signal in the productivity data. The use of an ecosystem performance approach for assessment of seasonal and interannual climate impacts on forage production in semi-arid grasslands proved to be a successful method in a case study covering the Nebraska Sandhills. In this study we developed a time series (2000-2018) of the Expected Ecosystem Performance (EEP), which serves as a proxy for annual forage production after accounting for non-climatic influences, while minimizing effects of management and disturbances. The EEP was an output of a piecewise regression tree model that establishes relationships between seasonal climate variables, site specific growth potential, and long-term variability in growth to capture changes in Actual Ecosystem Performance measured by time-integrated Normalized Difference Vegetation Index (derived from eMODIS). We converted the unitless EEP to biomass using the SSURGO range production data. These results were then compared to ground-observed biomass in various locations of the study area and revealed strong positive relationships (R-squared = 0.67). An analysis of data from years beyond the model training period suggests that the model can be used for creating historical and future estimates of forage production in the western U.S. The newly-established relationships between seasonal climate and site-specific characteristics can be used for creating timely post-season forage production assessments and, when combined with seasonal climate forecasts or scenarios, they can serve for producing within-season estimates of annual forage production. These could lead to more informed decision making by livestock producers and land managers. This approach is transferable to other areas where climate and remotely-sensed NDVI data exist and therefore could be used to monitor climate impacts on annual forage production across the global grasslands.
DOI: 10.25345/c5c87b
title: MassIVE MSV000088436 - GNPS - urine biomarkers of Chagas disease treatment success (mice)
title: Mice were infected with Trypanosoma cruzi parasites, followed by treatment with benznidazole. Controls include uninfected mice and mice treated with isoproterenol to induce cardiac failure through chemical mechanisms. Urine was collected pre- and post-treatment and extracted using methanol, followed by LC separation using polar C18 LC and positive mode MS/MS data acquisition.
DOI: 10.34943/972add52-7ac7-49c9-be4b-a6682ca74a64
title: Chatham Sound Hydrophone Deployed 2019-08-29

description: The Ocean Sonics icListen HF Hydrophone 1352 was deployed on 2019-08-29 at Chatham Sound. Chatham Sound is a sound on the North Coast of British Columbia, located between Dundas and Stephens Islands and the Tsimpsean Peninsula near Prince Rupert. This device is a Hydrophone. Hydrophones are devices containing transducers that convert underwater sound waves into electrical signals. They are acoustic instruments that can process data while they are being collected to produce calibrated waveform data. Hydrophones are typically used to study vocalizations of marine mammals, ship traffic and ambient noise. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 2.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.25502/z5e7-g511/d
title: Response of entomopathogenic fungi to UV light

description: Many entomopathogenic fungi have been screened for the development of myco-insecticide product against various insect pests but thier failure in the field have been attributed to environmental challenges. Thefore, development as microbial biopesticide products require selection of virulence strains which can tolerate abiotic factors known to be detrimental for fungi either during industrial production or in the field against target host pest. Our study was performed to investigate the effect of some environmental parameters on growth of two Cameroonian isolate, one M. anisopliae and one B. bassiana. Colony formation, mycelia growth and conidia production were assessed on PDA media at fourteen pH level (2 – 14), three photoperiods (continuous light, continuous dark, and 12h light/12h dark), five exposure time under UV light and four relative humidity levels (35, 50, 75 and 99 %). Results revealed that Cameroonian isolates successfully grew at acidic to alkaline medium with wide pH tolerance and optimum ranges. Light regimes affected mostly mycelia growth and fungi pigmentation which increased with the photophase extension. Cameroonian fungal isolates also exhibited high UVB tolerance with Beauveria isolate remaining active during all exposure time while Metarhium isolate did not form colonies at 45 min exposure under UVB light even when incubation time was extended by 6 days. Exposure to UV light pulse duration 30 min stimulated mycelia growth and conidia production for BIITAC6.2.2 and only mycelia growth for MIITAC11.3.4. Fungi development was found effective at low to high humidity with preference of moderate humidity environment for both strains. Climate change mitigation for the development of biopesticide is here discussed.
DOI: 10.5281/zenodo.5721982
title: Ketamine reverses stress-induced behavior by restoring excitatory synapses in the basolateral amygdala-projecting infralimbic prefrontal cortex neurons

description: Coding and data demo
DOI: 10.5281/zenodo.5719480
title: Ketamine reverses stress-induced behavior by restoring excitatory synapses in the basolateral amygdala-projecting infralimbic prefrontal cortex neurons

description: Coding and data demo
DOI: 10.25502/n35g-cz95/d
title: Response of entomopathogenic fungi to Photoperiods

description: Many entomopathogenic fungi have been screened for the development of myco-insecticide product against various insect pests but thier failure in the field have been attributed to environmental challenges. Thefore, development as microbial biopesticide products require selection of virulence strains which can tolerate abiotic factors known to be detrimental for fungi either during industrial production or in the field against target host pest. Our study was performed to investigate the effect of some environmental parameters on growth of two Cameroonian isolate, one M. anisopliae and one B. bassiana. Colony formation, mycelia growth and conidia production were assessed on PDA media at fourteen pH level (2 – 14), three photoperiods (continuous light, continuous dark, and 12h light/12h dark), five exposure time under UV light and four relative humidity levels (35, 50, 75 and 99 %). Results revealed that Cameroonian isolates successfully grew at acidic to alkaline medium with wide pH tolerance and optimum ranges. Light regimes affected mostly mycelia growth and fungi pigmentation which increased with the photophase extension. Cameroonian fungal isolates also exhibited high UVB tolerance with Beauveria isolate remaining active during all exposure time while Metarhium isolate did not form colonies at 45 min exposure under UVB light even when incubation time was extended by 6 days. Exposure to UV light pulse duration 30 min stimulated mycelia growth and conidia production for BIITAC6.2.2 and only mycelia growth for MIITAC11.3.4. Fungi development was found effective at low to high humidity with preference of moderate humidity environment for both strains. Climate change mitigation for the development of biopesticide is here discussed.
DOI: 10.5281/zenodo.5722286
title: NIHSS_802_stroke

description: This dataset contains information of 802 people with acute ischemic stroke. This information consists of age, sex, race, NIHSS, and infarct characteristics, acessed by DWI-MRI (hemisphere and arterial territory affected, lesion volume in cc and as in percentage of the brain affected).
DOI: 10.5281/zenodo.5722285
title: NIHSS_802_stroke

description: This dataset contains information of 802 people with acute ischemic stroke. This information consists of age, sex, race, NIHSS, and infarct characteristics, acessed by DWI-MRI (hemisphere and arterial territory affected, lesion volume in cc and as in percentage of the brain affected).