cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21814566
title: Supplementary Material for: A Novel Case of Multicentric Reticulohistiocytosis Associated with Renal Cell Carcinoma Successfully Treated with Infliximab and Methotrexate

description: Multicentric reticulohistiocytosis (MRH) is categorized as a rare non-Langerhans cell histiocytosis most commonly seen in women in the fourth to fifth decade of life. This systemic inflammatory condition affects multiple organ systems and can result in severe joint destruction which can progress to arthritis mutilans. To date, various underlying malignancies have been discovered in patients with MRH including breast, gastric, thymic, hepatic, and melanoma. There has been 1 case of underlying renal cell carcinoma reported in a patient diagnosed with MRH. Additionally, there is no consistently recognized treatment for MRH described in the literature. The rarity of the disease contributes to the difficulty in defining a standardized treatment. We present the case of a patient with extensive joint and skin involvement who was successfully treated with infliximab and methotrexate, experienced clinical improvement, and was later diagnosed with clear cell renal cell carcinoma. The synergistic effects of infliximab and methotrexate, in combination with the low side-effect profile, appear to be promising in the setting of MRH and in our patient resulted in the resolution of symptoms and cutaneous manifestations. We suggest this regimen as an effective combination therapy. We emphasize thorough and continuous screening for underlying malignancy associated with MRH, despite clinical improvement or negative malignancy work-up upon initial diagnosis.
DOI: 10.6084/m9.figshare.21820716
title: Supplementary Material for: Onset of Oral Lichen Planus Led to Direct-Acting Antiviral Therapy in a Patient with Long-Term Hepatitis C: The Role of a Dentist as Gatekeeper

description: Oral lichen planus (OLP), a chronic inflammatory mucocutaneous disease, is an extrahepatic manifestation of a hepatitis C virus infection. In recent years, direct-acting antivirals (DAAs) have made great strides in the treatment of hepatitis C. However, there might be a lack of information about the treatment strategies available among those with this condition. Herein, we report a case of an 85-year-old female patient who was diagnosed with hepatitis C at the age of 55 but had not received antiviral treatment over the past 30 years. She underwent DAA treatment following a recommendation from her oral surgeon after the onset of OLP. The patient had declined interferon therapy in the past, owing to concerns about its side effects. She was unaware of the benefits of DAA treatment, probably due to communication difficulties caused by senile hearing loss. Consultation with an oral surgeon for an erosive form of OLP led her to receive antiviral therapy for hepatitis C. She achieved a sustained virologic response (SVR) following the DAA treatment, along with improvements in the signs and symptoms of OLP. Oral surgeons play an important role as gatekeepers in guiding untreated hepatitis patients toward appropriate treatment.
DOI: 10.6084/m9.figshare.21493191.v1
title: The future of Arabic language learning for non-Muslims as an actualization of Wasathiyah Islam in Indonesia

description: The research was carried out with two approaches, namely quantitative first and followed by qualitative. Research data is analyzed critically and comparatively, through this analysis technique research findings will become logical for the readers. Looking at the results of the study it can be concluded that; <em>First</em>, learning Arabic for non-Muslims in Indonesia has a great opportunity, this finding is based on the basic function of language as a communication tool. This includes the meaning that learning any language is not limited by religion, ethnicity, or race. <em>Second</em>, learning Arabic for non-Muslims in Indonesia will be part of the basis for the actualization of Wasathiyah Islam in Indonesia. This research uses a <em>mix method</em> or mixed methods. The design of this research was used <em>sequential explanatory design</em>, which combines quantitative and qualitative approaches sequentially. [26]. The quantitative approach used is in the form of a survey where the researcher conducted a survey to the respondents who are the research sample. Meanwhile, the qualitative approach used <em>focused interviews</em> which are described descriptively. The kind of this research is conducted to obtain more comprehensive data on “The Future of Arabic Language Learning for Non-Muslims as the Actualization of Wasathiyah Islam in Indonesia” because it integrates the benefits of the two methods. The samples used in this study were as many as 64 respondents. The sampling technique of this research used was a <em>cluster random sampling technique</em> combined with <em>convenience sampling</em>, meaning that the sample is taken at random and also selected based on the availability of respondents and the ease of obtaining data. Quantitative survey data were analyzed by doing a percentage of the data obtained from the questionnaire, then the data were analyzed using quantitative descriptive. Meanwhile, qualitative data were analyzed using the Miles and Huberman model. <em>First,</em> after the data was collected, the researcher classified the data based on the specified research problem. <em>Second,</em> the researcher presented the data according to the specified problem. <em>Third,</em> the researcher concluded the findings from the research problem. Based on the research findings, this analysis focused on the three problems that have been formulated and the data critically examined by following these three stages.
DOI: 10.6084/m9.figshare.21821142
title: Supplementary Material for: <i>Helicobacter pylori</i> Reinfection Diagnosed by Endoscopic and Histologic Recurrence in a Patient with Gastric Mucosa-Associated Lymphoid Tissue Lymphoma

description: <i>Helicobacter pylori</i> infection is a major cause of gastric mucosa-associated lymphoid tissue (MALT) lymphoma. Successful <i>H. pylori</i> eradication can induce a complete remission (CR); however, it takes a long time. In this case, the recurrence of gastric MALT lymphoma was observed by endoscopic and histologic findings during a 11-year follow-up and due to <i>H. pylori</i> reinfection twice. After the first successful eradication and achieving histologic CR, the patient was starting to work at a nursing home for older adults, where she frequently came in contact with their vomitus or feces. In the examinations 2 years later after the first successful eradication, endoscopic and histologic findings have demonstrated deterioration. Similar findings were continuously observed in the examinations 3 months later, and <i>H. pylori</i> reinfection was confirmed by the rapid urease test. After the second successful eradication, endoscopic and histologic CR of gastric MALT lymphoma was achieved. However, endoscopic and histologic findings have shown deterioration again 1 year later after the histologic CR and at 3.5 years later after the second successful eradication. <i>H. pylori</i> reinfection was confirmed by the repeated urea breath test, and the patient had received the third eradication treatment; and the patient had achieved successful eradication. In addition, proper hygiene practices were advised to avoid <i>H. pylori</i> reinfection. <i>H. pylori</i> reinfection is very rare in adults after successful eradication in developed countries. After successful eradication and proper hygiene practice, endoscopic and histologic CR has been maintained for 2 years up to the present.
DOI: 10.17188/1199656
title: Materials Data on PuH3 by Materials Project

description: PuH3 is Sodium arsenide structured and crystallizes in the hexagonal P6_3/mmc space group. The structure is three-dimensional. Pu3+ is bonded in a 11-coordinate geometry to eleven H1- atoms. There are a spread of Pu–H bond distances ranging from 2.15–2.39 Å. There are two inequivalent H1- sites. In the first H1- site, H1- is bonded to four equivalent Pu3+ atoms to form a mixture of corner, edge, and face-sharing HPu4 tetrahedra. In the second H1- site, H1- is bonded in a trigonal planar geometry to three equivalent Pu3+ atoms.
DOI: 10.17188/1200204
title: Materials Data on PuH2 by Materials Project

description: PuH2 is Fluorite structured and crystallizes in the cubic Fm-3m space group. The structure is three-dimensional. Pu is bonded in a body-centered cubic geometry to eight equivalent H atoms. All Pu–H bond lengths are 2.32 Å. H is bonded to four equivalent Pu atoms to form a mixture of edge and corner-sharing HPu4 tetrahedra.
DOI: 10.25592/uhhfdm.1010
title: 3D Model of a plaster cast of Pancraticians

description: 3D Model of a plaster cast of Pancraticians
DOI: 10.48326/9db9-y054
title: Infrared Spectrometer onboard SuperCam/Mars 2020: relationship between RF power and the optical transmission
DOI: 10.5281/zenodo.7487265
title: AntiRef92

description: AntiRef92 is one of several AntiRef cluster datasets. AntiRef92 was created by clustering AntiRef94 at 92% sequence identity.
DOI: 10.15139/s3/ezy5zv
title: Replication Data for: Site-specific detection and differential levels of immune mediators in the sinonasal mucosa

description: Data utilized to in "Site-specific detection and differential levels of immune mediators in the sinonasal mucosa" by Lopez et al. The data are immune mediator levels detected in the inferior meatus at the head of the inferior turbinate (IM), the middle meatus (MM), and the sphenoethmoidal recess (SER) of the sinonasal mucosa from thirteen patients undergoing non-functional pituitary surgery without a history or radiographic evidence of inflammatory mucosal disease enrolled in an IRB-approved study at UNC-Chapel Hill (17-2677). Samples were collected using Leukosorb strips under endoscopic visualization.
DOI: 10.21227/h2h01c
title: VideoSet: A Large-Scale Compressed Video Quality Dataset Based on JND Measurement
DOI: 10.48690/1524212
title: LandScan Global 2017

description: Using an innovative approach that combines Geographic Information Science, remote sensing technology, and machine learning algorithms, ORNL's LandScan is the community standard for global population distribution. At 30 arc-second (approximately 1 km) resolution, LandScan is the finest resolution global population distribution data available representing an 'ambient population' (average over 24 hours). The LandScan algorithm, an R&D 100 Award Winner, uses spatial data, high-resolution imagery exploitation, and a multi-variable dasymetric modeling approach to disaggregate census counts within an administrative boundary. LandScan population data are spatially explicit - unlike tabular Census data. Since no single population distribution model can account for the differences in spatial data availability, quality, scale, and accuracy as well as the differences in cultural settlement practices, LandScan population distribution models are tailored to match the data conditions and geographical nature of each individual country and region. By modeling an ambient population, LandScan Global captures the full potential activity space of people throughout the course of the day and night rather than just a residential location.
DOI: 10.5281/zenodo.5021306
title: WALIS Spreadsheet Thompson Creveling v2.0

description: A compilation of Marine Isotope Stage 5a/5c relative sea level proxies and associated age data as it appears in the World Atlas of Last Interglacial Shorelines (WALIS) Database. Version 2 incorporates changes post review process. PDF included which details changes since version 1.
DOI: 10.5281/zenodo.5515863
title: Randomized Cooperative Overtake Maneuvers for Use in Machine Learning Algorithms

description: Randomized cooperative overtake maneuvers involving one host vehicle and up to three remote vehicles. Maneuver containers are defined as specified in Häfner et al., (2020) "CVIP: A Protocol for Complex Interactions Among Connected Vehicles." If for a maneuver container "rel-target-lane" is given, then the maneuver type is a lane change left/right. If, instead, "rel-target-speed" is given, then the maneuver type is "change speed". Within the raw data, the "validate_stats" files contain validation data as specified in the accompanying conference paper.
DOI: 10.5281/zenodo.5549536
title: ANI-1E: An equilibrium database from the ANI-1 database

description: <strong>ANI-1E: An equilibrium database from the ANI-1 database v.2.0</strong> <em>Authors: Luis Itza Vazquez-Salazar and Markus Meuwly</em><br> E-mail contact: litzavazquezs@gmail.com and m.meuwly@unibas.ch From the SMILES strings, provided by Smith et al., initial geometries using OpenBabel were generated.<br> Subsequently, geometries were optimised using PM7 implemented in MOPAC2016, before a final geometry optimisation and frequency calculation at the ωB97x/6-31G(d) level of theory performed using Gaussian09.<br> The final results were checked to assure that they did not contain imaginary frequencies and therefore correspond to a minimum on the potential energy surface, which can be different from the global minima for the molecule.<br> The total number of molecules is 57455; 7 molecules were unstable for optimisation. The format of the files is .xyz, following the style of the QM9 database and it contains the geometry minimal in energy, rotational constants, dipole moments, polarizabilities, along with energies of HOMO and LUMO, electronic spatial extent, zero-point energy, enthalpies, and free energies of atomisation. The header of the .xyz file follows the format<br> given in Table 3 of the QM9 paper with the difference that the TAG is 'ANI-1E'. Additionally, a file with the original smiles of the ANI-1 dataset and the smiles of ANI-1E is added. The seven molecules (56176,56177,56213,56214,56215,56216,56217) that do not converge are not included<br> in the new database. The .xyz of the final structures are available in the folder 'failed'. The output files for<br> all optimizations are available upon reasonable request to the authors. <br> We acknowledge Alfred Andersson and Prof. David van der Spoel for attracting our attention to<br> the problems on the first version of our database.
description: Work funded by the Swiss National Science Foundation (NCCR- MUST and Grant No. 200021-7117810)
DOI: 10.7935/ksx7-qq51
title: Parameter estimation sample release for GWTC-1
DOI: 10.6084/m9.figshare.21710177
title: The Autophagy Protein CsATG8 is Involved in Asexual Development and Virulence in the Pepper Anthracnose Fungus <i>Colletotrichum scovillei</i>

description: Autophagy serves as a survival mechanism and plays important role in nutrient recycling under conditions of starvation, nutrient storage, ad differentiation of plant pathogenic fungi. However, autophagy-related genes have not been investigated in <i>Colletotrichum scovillei</i>, a causal agent of pepper fruit anthracnose disease. <i>ATG8</i> is involved in autophagosome formation and is considered a marker of autophagy. Therefore, we generated an <i>ATG8</i> deletion mutant, <i>ΔCsatg8</i>, via homologous recombination to determine the functional roles of <i>CsATG8</i> in the development and virulence of <i>C. scovillei</i>. Compared with the wild-type, the deletion mutant <i>ΔCsatg8</i> exhibited a severe reduction in conidiation. Conidia produced by <i>ΔCsatg8</i> were defective in survival, conidial germination, and appressorium formation. Moreover, conidia of <i>ΔCsatg8</i> showed reduced lipid amount and PTS1 selectivity. A virulence assay showed that anthracnose development on pepper fruits was reduced in <i>ΔCsatg8</i>. Taken together, our results suggest that <i>CsATG8</i> plays various roles in conidium production and associated development, and virulence in <i>C. scovillei</i>.
DOI: 10.6084/m9.figshare.21710177.v1
title: The Autophagy Protein CsATG8 is Involved in Asexual Development and Virulence in the Pepper Anthracnose Fungus <i>Colletotrichum scovillei</i>

description: Autophagy serves as a survival mechanism and plays important role in nutrient recycling under conditions of starvation, nutrient storage, ad differentiation of plant pathogenic fungi. However, autophagy-related genes have not been investigated in <i>Colletotrichum scovillei</i>, a causal agent of pepper fruit anthracnose disease. <i>ATG8</i> is involved in autophagosome formation and is considered a marker of autophagy. Therefore, we generated an <i>ATG8</i> deletion mutant, <i>ΔCsatg8</i>, via homologous recombination to determine the functional roles of <i>CsATG8</i> in the development and virulence of <i>C. scovillei</i>. Compared with the wild-type, the deletion mutant <i>ΔCsatg8</i> exhibited a severe reduction in conidiation. Conidia produced by <i>ΔCsatg8</i> were defective in survival, conidial germination, and appressorium formation. Moreover, conidia of <i>ΔCsatg8</i> showed reduced lipid amount and PTS1 selectivity. A virulence assay showed that anthracnose development on pepper fruits was reduced in <i>ΔCsatg8</i>. Taken together, our results suggest that <i>CsATG8</i> plays various roles in conidium production and associated development, and virulence in <i>C. scovillei</i>.
DOI: 10.6084/m9.figshare.21789735
title: Characterization of Nonaflatoxigenic <i>Aspergillus flavus</i>/<i>oryzae</i> Strains Isolated from Korean Traditional Soybean Meju

description: Filamentous fungi that could be classified into <i>Aspergillus flavus</i>/<i>oryzae</i> were isolated from traditionally fermented meju commercially available in Korea. The samples were analyzed for aflatoxin B1 and ochratoxin A contamination by HPLC; however, no toxin was detected. In addition, fungal and bacterial metagenomic sequencing were performed to analyze the microbial distribution in the samples. The results revealed that the distribution and abundance of fungi and bacteria differed considerably depending on the production regions and fermentation conditions of the meju samples. Through morphological analysis, ITS region sequencing, and assessment of the aflatoxin-producing ability, a total of 32 <i>A. flavus/oryzae</i> strains were identified. PCR analysis of six regions with a high mutation frequency in the aflatoxin gene cluster (AGC) revealed a total of six types of AGC breaking point patterns. The <i>A. flavus/oryzae</i> strains did not exhibit the high amylase activity detected in the commercial yellow koji strain (starter mold). However, their peptidase and lipase activities were generally higher than that of the koji isolates. We verified the safety of the traditionally fermented meju samples by analyzing the AGC breaking point pattern and the enzyme activities of <i>A. flavus/oryzae</i> strains isolated from the samples. The isolated strains could possibly be used as starter molds for soybean fermentation.
DOI: 10.6084/m9.figshare.21789735.v1
title: Characterization of Nonaflatoxigenic <i>Aspergillus flavus</i>/<i>oryzae</i> Strains Isolated from Korean Traditional Soybean Meju

description: Filamentous fungi that could be classified into <i>Aspergillus flavus</i>/<i>oryzae</i> were isolated from traditionally fermented meju commercially available in Korea. The samples were analyzed for aflatoxin B1 and ochratoxin A contamination by HPLC; however, no toxin was detected. In addition, fungal and bacterial metagenomic sequencing were performed to analyze the microbial distribution in the samples. The results revealed that the distribution and abundance of fungi and bacteria differed considerably depending on the production regions and fermentation conditions of the meju samples. Through morphological analysis, ITS region sequencing, and assessment of the aflatoxin-producing ability, a total of 32 <i>A. flavus/oryzae</i> strains were identified. PCR analysis of six regions with a high mutation frequency in the aflatoxin gene cluster (AGC) revealed a total of six types of AGC breaking point patterns. The <i>A. flavus/oryzae</i> strains did not exhibit the high amylase activity detected in the commercial yellow koji strain (starter mold). However, their peptidase and lipase activities were generally higher than that of the koji isolates. We verified the safety of the traditionally fermented meju samples by analyzing the AGC breaking point pattern and the enzyme activities of <i>A. flavus/oryzae</i> strains isolated from the samples. The isolated strains could possibly be used as starter molds for soybean fermentation.
DOI: 10.17632/7nnvbr35np.1
title: Retrospective analysis of sepsis in cutaneous T-cell lymphoma reveals significantly greater risk for Black patients

description: Supplementary files for retrospective cohort study investigating sepsis in cutaneous T-cell lymphoma (CTCL) and non-CTCL non-Hodgkin lymphoma patients at a single large academic medical center
DOI: 10.5281/zenodo.7528253
title: Klaes et al. 2023 - Iron (hydr)oxide formation in Andosols under extreme climate conditions

description: This data set contains wet chemical (pedogenic oxide extractions), bulk XRF, Raman imaging spectroscopy, NanoSIMS and SEM-EDS data presented in the paper "Iron (hydr)oxide formation in Andosols under extreme climate conditions" (Klaes et al., 2023).
DOI: 10.5281/zenodo.7528252
title: Klaes et al. 2023 - Iron (hydr)oxide formation in Andosols under extreme climate conditions

description: This data set contains wet chemical (pedogenic oxide extractions), bulk XRF, Raman imaging spectroscopy, NanoSIMS and SEM-EDS data presented in the paper "Iron (hydr)oxide formation in Andosols under extreme climate conditions" (Klaes et al., 2023).
DOI: 10.34740/kaggle/dsv/4842281
title: Elon Musk Tweets
DOI: 10.6084/m9.figshare.21630089
title: Supplementary Material for: Impacts of the COVID-19 pandemic exposure on child dental caries: Difference-in-differences analysis

description: The impact of the coronavirus disease 2019 (COVID-19) pandemic on dental caries is unknown. We investigated the effect of the pandemic on child dental caries in Japan by comparing the increase in dental caries from fourth to sixth grade between two cohorts, COVID-19 exposed cohort, and COVID-19 unexposed cohort, using difference-in-difference analysis. A longitudinal data that followed elementary school children in Adachi City, Tokyo, was analyzed. The analysis consisted of two cohorts: those who were in fourth grade in 2016 and sixth grade in 2018 (COVID-19 unexposed cohort, N = 399) and those who were in fourth grade in 2018 and sixth grade in 2020 (COVID-19 exposed cohort, N = 3,082). Children’s dental caries was examined by school dentists. A difference-in-difference analysis, adjusting for time-variant variables, i.e., household socioeconomic status, children’s oral health behavior, and caregivers’ psychological distress, was performed. In fourth grade, the number of Decayed, Missing, and Filled permanent Teeth (DMFT) was not different between the COVID-19 unexposed and exposed cohorts (mean = 0.241 and 0.242, respectively). In sixth grade, DMFT increased by 0.067 in the COVID-19 unexposed cohort and 0.180 in the COVID-19 exposed cohort. The interaction term of grade and cohorts for caries by difference-in-differences analysis showed that dental caries among the COVID-19 exposed cohort showed a significant increase in the number of dental caries by 0.116 (95% confidence interval 0.015, 0.216) compared to the COVID-19 unexposed cohort. Child dental caries slightly increased after the pandemic. Studies with longer follow-ups are needed to evaluate the impact of the pandemic on child dental caries.