cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/vdgdzmb8xg
title: Cataract Distribution Pattern - Place, Time and Person

description: Data collected from o/o Director, Karnataka State Health and Family Welfare Society (Blindness Control Division) for the period 2018 Jan to Dec.
The study uses this data to identify a disease distribution pattern in terms of place, time and person for the study area.  A statistical significance test is performed to identify the vulnerable place, season and gender for the disease in the study area.
DOI: 10.17632/3m3t4f9ft3
title: MULA, an affordable framework for multifunctional liquid automation in natural- and life sciences with a focus on hardware design, setup, modularity and validation

description: The implementation of automation has already had a considerable impact on chemical and pharmaceutical industrial laboratories. However, academic laboratories have often been more reluctant in adapting such a technology due to the high cost of commercial liquid handling systems. We present here a detailed description of the setup, validation, and utilization of a multifunctional liquid automation (MULA) system that can be used to automate various chemical and biological tasks. Considering that such a setup must be highly customizable, we also designed MULA with respect to modularity, providing detailed insight as far as possible. Including all 3D-printed parts and the used Hamilton gastight micro syringe, the total construction cost is approximately 700 €. This allows us to achieve a highly reliable and accurate system that exceeds the precision of a classical air displacement pipette while still retaining the ability to use closed vial (septa) setups. To encourage other groups to adapt this setup, detailed instructions and tips for every step of the process are provided, along with the complete CAD design of MULA and control code, which are freely available for download under the CC BY NC 3.0 license.
DOI: 10.17632/sbs8k66bwf
title: Global Technical Energy Potentials of Enhanced Geothermal Systems

description: This datasets provides the results from a global technical potential analysis regarding enhanced geothermal systems. It is linked to the publication "Global Electricity Potentials from Geothermal Power Under Technical, Economic, Sustainable Evaluation". Attached you can find 4 files:
1) Additional figures to the analysis conducted in the main work
2) Literature comparison of the results
3) Data on the cost-potential curves per country
4) Raw data of the global location specific plants
DOI: 10.17632/3gj9r8rzx9
title: EVO_1D_EARTH

description: Source code required to reproduce the findings in https://doi.org/10.1016/j.pepi.2024.107267.
DOI: 10.17632/429rszyc65
title: Very accurate time propagation of coupled Schrödinger equations for femto- and attosecond physics and chemistry, with C++ source code

description: In this article, I present a very fast and high-precision (up to 33 decimal places) C++ implementation of the semi-global time propagation algorithm for a system of coupled Schrödinger equations with a time-dependent Hamiltonian. It can be used to describe time-dependent processes in molecular systems after excitation by femto- and attosecond laser pulses. It also works with an arbitrary user supplied Hamiltonian and can be used for nonlinear problems. The semi-global algorithm is briefly presented, the C++ implementation is described and five sample simulations are shown. The accompanying C++ source code package is included. The high precision benchmark (long double and float128) shows the estimated calculation costs. The presented method turns out to be faster and more accurate than the global Chebyshev propagator.
DOI: 10.17632/4y32ks2t62
title: Oil Palm Empty Fruit Bunch (OPEFB) Fiber Length

description: This file provides five primary data sets on the length of oil palm empty fruit bunch (OPEFB) fibers resulting from conditioning processes, i.e., grinding and sieving.
DOI: 10.17632/fsnn5w4fyb
title: Data-set for investigation of carbonized bio-composite briquettes

description: The data-sets shows the variation of briquette properties with different compositions of agricultural wastes that constitute the briquettes.
DOI: 10.17632/m4ggg4wzzt
title: Data for: Sociodemographic and Psychological Study on Performance of Students for The Covid-19 Aftermath Dataset.

description: This paper presents the dataset of undergraduates learning habits during and before the occurrence of pandemic COVID-19 under the scope of sociodemographic and psychological aspects. This dataset consists of four (4) main sections which are students' demographic, psychological disruption, students' learning habits and integration of online sessions with sustainability topics. A total of 37 variables were distributed via an online survey platform. The link of the online survey was circulated to the students using few social media platforms such as WhatsApp groups, Telegram, and faculties' Facebook starting from June 1 until June 31, 2020. There was a total of 668 respondents accompanied by consent were agreed to join the survey. This dataset can have an important role for research and education in identifying the impact on learning performance among the undergraduate students during COVID-19 pandemic based on different sociodemographic and psychological aspects
DOI: 10.17632/5xfxtr4g4c
title: Advanced World Formula in Mathematics

description: This document presents the
Advanced World Formula (AWF), a significant evolution that addresses theoretical inconsistencies,
clarifies dimensional relationships, optimizes operator interactions, and provides more rigorous
mathematical foundations—while maintaining backward compatibility with established frameworks.
DOI: 10.17632/nt59rwz6r6
title: Tracing Genetic Diversity Captures the Molecular Basis of Misfolding Disease

description: 1) 'AAT variants data with DMSO.xlsx' contains the data of measured intracellular monomer, intracellular polymer, secreted monomer, secreted polymer and the inhibitory activity to neutraphil elastase for 76 AAT variants including AAT-WT in both Huh7.5 cell line and IB3 cell line.
2) 'AAT variants data with PU-WS13.xlsx' contains the raw data of measured intracellular monomer, intracellular polymer, secreted monomer, secreted polymer and the inhibitory activity to neutraphil elastase for 76 AAT variants including AAT-WT under treatment of PU-WS13 in Huh7.5 cell line. 
3) The input files, R-code scripts and output files for each phenotype landscape, barcode and functional structure in the presence or absence of PU-WS13 treatment, as well as the delta phenotype barcodes and structures are included in the folder of 'R-code scripts with input-output files'. The R-code scripts for Bayesian analysis are also included in the folder of 'R-code scripts with input-output files'.
DOI: 10.17632/gd9ysj73jd
title: ThalassemiaPBS

description: The ThalassemiaPBS dataset is a peripheral blood smear images collected from four thalassemia patients. At present, it is infrequent for a public dataset to relate to microscopic images of thalassemia's peripheral blood smear. Therefore, this dataset will be a source of data for computer application researchers related to thalassemia
DOI: 10.17632/zf3xp3wtwd
title: Dataset of residual olfactory impairment among Covid-19 patients in rehabilitation period.

description: This dataset cantains raw data about olfactory impairment and other residual symptoms obtained from clinical recovered COVID-19 patients after aroud 16 weeks from disease onset, and presents analysed data result comparing difference of olfactory recovery between severe and common cases. Intervals between visits and disease onset are also listed here.
DOI: 10.6084/m9.figshare.16602368.v1
title: Data for "Combined effects of body posture and three-dimensional wing shape enable efficient gliding in flying lizards"

description: Data for "Combined effects of body posture and three-dimensional wing shape enable efficient gliding in flying lizards"<br>
DOI: 10.17632/42863yb6jf
title: Characterization data FTIR and DLS for Palmarosa and Tea Tree nanoemulsions at 5% and 10%

description: Data of Fourier transform infrared spectroscopy (FTIR) analysis for composition and Dynamic Light Scattering (DLS) for polydispersity on O/W nanoemulsions of Palmarosa and tea Tree at concentrations of 5% and 10% using Eumulgin as surfactant.
DOI: 10.17632/8gf9vpkhgy
title: Chest X-ray dataset for lung segmentation

description: The proposed dataset has been combined from three popular lung segmentation datasets: Darwin, Montgomery, and Shenzhen. The combined data allow researchers and clinicians to gain access to a good quality dataset, a large proportion of which has been manually annotated. The combined dataset consists of 6,810 images, with corresponding binary masks of lungs with the following distribution of images between the three datasets:
•	6,106 images from the Darwin dataset;
•	139 images from the Montgomery dataset;
•	566 images from the Shenzhen dataset.

The Darwin dataset [1, 2] images include most of the heart, revealing lung opacities behind the heart, which may be relevant for assessing the severity of viral pneumonia. The lower-most part of the lungs, where visible, is defined by the extent of the diaphragm. Where present and not obstructive to the distinguishability of the lungs, the diaphragm is included up until the lower-most visible part of the lungs. A key property of this dataset is that image resolutions, sources, and orientations vary across the dataset, with the smallest image being 156x156 pixels and the largest being 5600x4700 pixels. Furthermore, we included the portable X-ray images which are of significantly lower quality as compared to standard X-rays. A key limitation of the Darwin dataset is that it does not contain lateral X-ray lung segmentations. It is worth noting that lung segmentations were performed by human annotators using Darwin's Auto-Annotate AI and then adjusted and reviewed by expert radiologists.

Both the Montgomery and Shenzhen datasets [3] were published by the United States National Library of Medicine and are made of posteroanterior chest X-ray images. These images are available to foster research in computer-aided diagnosis of pulmonary diseases with a special focus on pulmonary tuberculosis. The datasets were acquired from the Department of Health and Human Services (Maryland, USA) and Shenzhen №3 People's Hospital (Shenzhen, China). Both datasets contain normal and abnormal chest X-ray images with manifestations of tuberculosis and include associated radiologist readings.

References:
1. 	Darwin’s Auto-Annotate AI. Available: https://www.v7labs.com/automated-annotation
2. 	COVID-19 X-ray dataset. Available: https://github.com/v7labs/covid-19-xray-dataset
3. 	Jaeger S, Candemir S, Antani S, Wáng Y-XJ, Lu P-X, Thoma G. Two public chest X-ray datasets for computer-aided screening of pulmonary diseases. Quant Imaging Med Surg. 2014;4: 475–477. doi:10.3978/j.issn.2223-4292.2014.11.20
DOI: 10.6084/m9.figshare.22078490.v1
title: scRNAseq and scTCRseq of eye and blood for uveitis

description: Cell Ranger v4 outputs for eye and blood samples from HLA-B*27-associated uveitis, non-HLA-B*27-asscoiated acute anterior uveitis, and healthy controls (blood only)
DOI: 10.17632/9kvk7nkhx6
title: Annotated Infant Fundus Images for Object Detection of Key Structures (Optic Disk and Macula)

description: The data set contains fundus images for object detection research.
Some images have clipped corners (patient info watermark is printed in this area) to ensure they are de-identified.
All images are annotated by one senior pediatric ophthalmologist in SEH (Shenzhen Eye Hospital).
An image annotation tool is developed based on the "VGG Image Annotator (VIA)" tool from the University of Oxford.The tool is included in this repository.
The optic disk and macula in each fundus image are annotated by rectangular bounding boxes.
This repository also contains related materials for our case study on this data set.

Cite this article if you use this dataset:
Y. Zhang et al., "Morphological Rule-Constrained Object Detection of Key Structures in Infant Fundus Image," in IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2023, doi: 10.1109/TCBB.2023.3234100.
DOI: 10.17632/cgmmttr4bz
title: Low-Cost PIV System

description: This repository is for designing and characterizing a low-cost PIV system project at Ashesi University. This repository contains CAD files, schematics, PDFs, and Arduino files.
DOI: 10.17632/krnyfshh82
title: Dataset on the transcriptome of the mangrove oyster Crassostrea gasar

description: The growing accessibility to NGS technologies led to the rapid development of innovative bioinformatics tools to analyze sequence data and fill the databases with new finds. However, current bioinformatics workflows focus on emerging technologies data. In contrast, bioinformatics tools dedicated to former sequencing methods (i.e., Roche 454 GS FLX+) have become deprecated. Therefore, we revisited the pyro-sequenced C. gasar raw reads, and we discovered they contain unraveled and valuable information. As such, this data contains information about the comparison of different bioinformatics tools and their capabilities to generate informative transcriptomes from the Roche 454 read data of gills and digestive glands of the oyster C. gasar previously challenged with environmental pollutants and thus retrieve a more comprehensive transcriptome. The Trinotate pipeline (http://trinotate.github.io) was used to annotate protein function and gene ontology, and pathway assignment of identified open reading frames (ORFs). Nucleotide and protein sequences were used to search against the NCBI nr and UniProtKB/Swiss-Prot (uniprot_sprot.trinotate_v2.0.pep.gz) databases using NCBI-BLASTx and BLASTp v2.10.0 (e-value 1e−10 -max_target_seqs 1 -outfmt 6), respectively. In this novel transcriptome, we were able to identify genes related to Zn distribution in cells (Zn transporters - ZIP, ZnT), metallothionein (MTI and MTIV), Ca+ transporter (NCX and ATP2B), and Cu distribution in cells (ATP7, ATOX1, CCS, and laccase-like).
DOI: 10.17632/ryp8rng78f
title: Beijing neighborhood socioeconomic status dataset

description: This is supplementary data to the article "Measuring neighborhood socioeconomic status from the sky and the street", which shows the results of the extrapolation of socio-economic conditions of neighborhoods in two scales (938 traffic analysis zones and 130 townships) in the central area of Beijing.

The neighborhood socioeconomic status (nSES) comprise a total of eight indicators in five dimensions.
1.	Hukou
-	Percentage of households with a hukou (HUKOU)
2.	Education
-	Percentage of tertiary educated population (TER_EDU)
-	Mean years of schooling (EDU_YRS)
3.	Employment
-	Percentage of high paying population (JOB)
4.	Income
-	Mean household income (INCOME)
5.	Housing
-	Mean floor area (AREA)
-	Mean floor area per capita (AREA_PER)
-	Percentage of commercial housing (COM_HOUSE)
DOI: 10.17632/vrhtsdhprr
title: Zhou et al 2019, EGF addition to EPC2:CP-A

description: Videos to accompany Zhou et al 2019. Please see publication for details: Motion Sensing Superpixels (MOSES) is a systematic, computational framework to quantify and discover cellular motion phenotypes Felix Y. Zhou, Carlos Ruiz-Puig, Richard P. Owen, Michael J. White, Jens Rittscher, Xin Lu eLife 2019
DOI: 10.17632/ffk9nphmxv
title: The Grant Proposal Game: An Experimental Study on Herding and Divergent Behaviors in Competition

description: The Grant Proposal Game: An Experimental Study on Herding and Divergent Behaviors in Competition
Experimental Economics

By Mugerman, Winter, Yafeh

Overview 
The files provided contain the data and code (Excel and Stata) required for the replication of all the tables and figures contained in the body of our paper, as well as the raw data for the alternative experiment presented in Appendix B.
Data Availability and Provenance Statements
The experiment was conducted using oTree. Participants were recruited through the online platform Prolific, which also collected general and anonymous demographic data handled payment at the end of the experiment. Upon enrolling in the experiment, each participant received a link to join the session, and all players in a session played simultaneously. Participation was fully anonymous, both with regard to other participants and with regard to the researchers. Full details of the experimental instructions and procedure are provided in a separate document, as well as in our full research paper (under Section 3 – “Experiment” and Appendix A – “Experiment Screenshots”).
The “Coin Experiment” in Appendix B was also conducted using oTree. Participants were recruited from among the student body of the Hebrew University of Jerusalem, and were supervised via a Zoom meeting. The participant pool was balanced in terms of gender, and all participants were required to have a proficient command of the Hebrew language. Session scheduling ensured consistency in terms of weekdays and hours to minimize potential external influences. Multiple supervisors were present throughout the sessions to provide instructions, address queries, and ensure compliance with the experiment's guidelines. Further details are provided in a separate document, and in Appendix B of the full research paper. 
Simulation data was generated by the authors of the paper using Excel.
The authors of this paper hold exclusive rights to the use and distribution of all data used as part of this research. Any additional use of the data by third parties requires the written approval of the authors.
DOI: 10.6084/m9.figshare.12364793.v1
title: Additional file 1 of Knockdown of Son, a mouse homologue of the ZTTK syndrome gene, causes neuronal migration defects and dendritic spine abnormalities

description: Additional file 1: Table S1. Numbers of GFP-positive cells in each layer of the developing cortex (%) Table S2. Numbers of GFP-positive cells in each layer of the developing cortex (%) Table S3. Dendritic spine density values (per 10 μm of dendrite) of each neuron
DOI: 10.6084/m9.figshare.26932090.v1
title: Supporting Data: A Four-Coordinate Pr<sup>4+</sup> Imidophosphorane Complex

description: Supporting computational data for the publication titled:A. C. Boggiano, S. Roy Chowdhury, M. D. Roy, M. G. Bernbeck, S. M. Greer, B. Vlaisavljevich,* and H. S. La Pierre* “A Four-Coordinate Pr<sup>4+</sup> Imidophosphorane Complex" Angew. Chem. Int. Ed., 2024, e202409789. DOI: 10.1002/anie.202409789
DOI: 10.17632/7ry6s7fxb4
title: Habitat and resistance values for adder, water vole, dormouse and hedgehog

description: This data is needed for performing functional connectivity analysis using the algorithms Circuitscape and/or Omniscape. It includes the habitat and resistance values of different habitat types and environmental features for the European hedgehog (Erinaceus europaeus),  Hazel dormouse (Muscardinus avellanarius), Adder (Vipera berus) and Water vole (Arvicola amphibius). 
The habitats/environmental features contained in this dataset are those present in the following GIS databases or data layers:
- Centre for Ecology and Hydrology (CEH) Land Cover Map 2019: for land cover, free for higher education institutions via Digimap.
https://www.ceh.ac.uk/data/data-portals
- ORVal Parks England: for green infrastructure (e.g. gardens, parks, urban woods) in England.
https://www.leep.exeter.ac.uk/orval/documents 
- ORVal Paths England: for path networks England.
https://www.leep.exeter.ac.uk/orval/documents 
- OS Roads, Ordnance Survey Open Data: for road infrastructure in England.
https://osdatahub.os.uk/downloads/open/OpenRoads 
- OS Rivers, Ordnance Survey Open Data: for rivers networks in England.
https://osdatahub.os.uk/downloads/open/OpenRivers 
- Priority I habitats

Data was obtained through expert elicitation. Experts in the species of interest were identified through academic publications or job role in relevant conservation organisations (e.g., People's Trust for Endangered Species, Mammals group or Biological Record Centres). The survey to elicit knowledge was structured as follows. 
First, after a brief description of the objectives of the study, respondents were asked to select the focal species for which they were filling out the survey. Then, they were instructed on the meaning of habitat and resistance values. The next survey sections presented the habitats and features contained in the GIS data layers. Each habitat was accompanied by its definition to avoid bias in the interpretation of the habitat types. Respondents were asked to rate the suitability of habitat (Uninhabitable, Somewhat suitable, Moderately suitable, Highly suitable, Ideal habitat) and resistance value (Minimum resistance, Low resistance, Moderate resistance, High resistance, Maximum resistance) of each habitat/feature defined for the selected species.
Three valid (complete) responses for the adder, five for the dormouse, six for the hedgehog and thirteen for the water vole were obtained. 
Following data collection, the resulting scores (from 0 to 4) were transformed using the usual min-max normalization formula:
x^'=(x-min⁡(x))/max⁡〖(x)-min⁡(x)〗 
into the range of values needed for habitat (from 0 to 1) and resistance (from 0 to 100), following the ranges from demonstration files provided by the developers of Gnarly Landscape Utilities: 
McRae, B. H., Shirk, A. J., & Platt, J. T. (2014). Gnarly Landscape Utilities: Resistance and Habitat Calculator User Guide. The Nature Conservancy, Fort Collins, CO. https://circuitscape.org/gnarly-landscape-utilities/
DOI: 10.17632/cwws6tcws2
title: Bangladeshi Medicinal Plant Dataset

description: Images were collected from ten Bangladeshi medicinal plant species:
1. Catharanthus roseus
2. Bryophyllum pinnatum
3. Longevity spinach
4. Terminalia bellirica
5. Terminalia chebula
6. Centella Asiatica
7. Azadirachta indica
8. Holy basil
9. Cymbopogon citratus
10. Euphorbia tithymaloides
DOI: 10.17632/d5z89nnyv6
title: MEAMfit: A reference-free modified embedded atom method (RF-MEAM) energy and force-fitting code

description: Abstract MEAMfit v1.02. Changes: various bug fixes; speed of single-shot energy and force calculations (not optimization) increased by × 10 ; elements up to Cn ( Z = 112 ) now correctly read from vasprun.xml files; EAM fits now produce Camelion output files; changed max number of vasprun.xml files to 10,000 (an unnecessary lower limit of 10 was allowed in the previous version). Title of program: MEAMfit Catalogue Id: AEWY_v1_1 Nature of problem Fitting embedded atom method (EAM) and reference-free modified embedded atom method (RF-MEAM) potentials [2-3] to energies and forces produced by VASP [4-7]. Versions of this program held in the CPC repository in Mendeley Data AEWY_v1_0; MEAMfit; 10.1016/j.cpc.2015.05.016 AEWY_v1_1; MEAMfit; 10.1016/j.cpc.2016.02.015 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)