cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15019486
title: Wine4cast | Grapevine Bunch Segmentation and Berry Detection Dataset

description: A total of 1530 RGB images of grapevine bunches were collected from different vineyards in various portuguese demarcated wine regions in the 2022, 2023 and 2024. Images of grapevine bunches were collected during the fruit development stage, from majority of berries touching (BBCH 79) and berries developing colour (BBCH 83) to berries ripe for harvest (BBCH 89). The dataset includes images of the following grapevine varieties:Touriga Nacional (VIVC-12594)Viosinho (VIVC-13109);Tinta Roriz (VIVC-12350);Moscatel Galego (VIVC-8031)Touriga Franca (VIVC-12593)Jaen (VIVC-5652)Trajadura (VIVC-12629)Tinta Barroca (VIVC-12462)Cabernet Sauvignon (VIVC-1929)In addition to the images, the dataset includes annotations of the bunches (instance segmentation) and the berries (detection) in YOLO format.

 

This work was co-financed by "Component 5: Capitalization and Business Innovation",integrated in the Resilience Dimension of the Recovery and Resilience Plan within the scope of the Recovery and Resilience Mechanism (MRR) of the European Union (EU), framed in the NextGenerationEU, for the period 2021–2026 within the project “Wine4cast – Space-time prediction of wine productivity for multi-actor usability: integration of remote optical-photonic sensors, artificial intelligence and climate scenarios” (ref: PRR-C05-i03-I-000071) (https://www.fc.up.pt/Wine4Cast/Home.html).
DOI: 10.5281/zenodo.15019487
title: Wine4cast | Grapevine Bunch Segmentation and Berry Detection Dataset

description: A total of 1530 RGB images of grapevine bunches were collected from different vineyards in various portuguese demarcated wine regions in the 2022, 2023 and 2024. Images of grapevine bunches were collected during the fruit development stage, from majority of berries touching (BBCH 79) and berries developing colour (BBCH 83) to berries ripe for harvest (BBCH 89). The dataset includes images of the following grapevine varieties:Touriga Nacional (VIVC-12594)Viosinho (VIVC-13109);Tinta Roriz (VIVC-12350);Moscatel Galego (VIVC-8031)Touriga Franca (VIVC-12593)Jaen (VIVC-5652)Trajadura (VIVC-12629)Tinta Barroca (VIVC-12462)Cabernet Sauvignon (VIVC-1929)In addition to the images, the dataset includes annotations of the bunches (instance segmentation) and the berries (detection) in YOLO format.

 

This work was co-financed by "Component 5: Capitalization and Business Innovation",integrated in the Resilience Dimension of the Recovery and Resilience Plan within the scope of the Recovery and Resilience Mechanism (MRR) of the European Union (EU), framed in the NextGenerationEU, for the period 2021–2026 within the project “Wine4cast – Space-time prediction of wine productivity for multi-actor usability: integration of remote optical-photonic sensors, artificial intelligence and climate scenarios” (ref: PRR-C05-i03-I-000071) (https://www.fc.up.pt/Wine4Cast/Home.html).
DOI: 10.15468/dl.mp5w5r
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "Geometry POLYGON((-164.31081 -42.35534,12.31081 -42.35534,12.31081 28.35534,-164.31081 28.35534,-164.31081 -42.35534))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sambucus peruviana Kunth"
 ]
}

 The dataset includes 10 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007026-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ayze5g
title: Occurrence Download

description: A dataset containing 273303 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Fossil, Living Specimen, Occurrence evidence)",
 "Continent is Africa",
 "IucnRedListCategory is one of (EX, EW, CR, EN, VU, NT, LC, DD, NE)",
 "Year is 2000"
 ]
}

 The dataset includes 273303 records from 731 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007012-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/usj8dz
title: RBINS Echinodermata collection

description: The RBINS is known for its rich echinoderm collections. The Institute has a particularly rich collection of sea cucumbers, with material from all over the world and many type specimens. Of particular interest to the taxonomic community are the several thousands of microscope slides of ossicles from thousands of specimens, including hundreds of type specimens.
DOI: 10.5281/zenodo.14967622
title: Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver: snRNA-seq FASTQ Male rAAV2-Treated Animal 204

description: You can find here the FASTQ files related to the datasets used in the publication: 

Amberg, B. et al.  Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver

In this particular upload, you can find the snRNA-seq  FASTQ files of the male rAAV2-treated animal 204.
DOI: 10.5281/zenodo.14967623
title: Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver: snRNA-seq FASTQ Male rAAV2-Treated Animal 204

description: You can find here the FASTQ files related to the datasets used in the publication: 

Amberg, B. et al.  Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver

In this particular upload, you can find the snRNA-seq  FASTQ files of the male rAAV2-treated animal 204.
DOI: 10.5281/zenodo.14967674
title: Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver: snRNA-seq FASTQ Female rAAV2-Treated Animal 251

description: You can find here the FASTQ files related to the datasets used in the publication: 

Amberg, B. et al.  Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver

In this particular upload, you can find the snRNA-seq  FASTQ files of the female rAAV2-treated animal 251.
DOI: 10.5281/zenodo.14967675
title: Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver: snRNA-seq FASTQ Female rAAV2-Treated Animal 251

description: You can find here the FASTQ files related to the datasets used in the publication: 

Amberg, B. et al.  Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver

In this particular upload, you can find the snRNA-seq  FASTQ files of the female rAAV2-treated animal 251.
DOI: 10.21227/ahdq-g045
title: Event-Based Crossing Dataset (EBCD)

description: Event-based vision revolutionizes traditional image sensing by capturing asynchronous intensity variations rather than static frames, enabling ultrafast temporal resolution, sparse data encoding, and enhanced motion perception. While this paradigm offers significant advantages, conventional event-based datasets impose a fixed thresholding constraint to determine pixel activations, severely limiting adaptability to real-world environmental fluctuations. Lower thresholds retain finer details but introduce pervasive noise, whereas higher thresholds suppress extraneous activations at the expense of crucial object information. To mitigate these constraints, we introduce the Event-Based Crossing Dataset (EBCD), a comprehensive dataset tailored for pedestrian and vehicle detection in dynamic outdoor environments, incorporating a multi-thresholding framework to refine event representations. By capturing event-based images at ten distinct threshold levels (4, 8, 12, 16, 20, 30, 40, 50, 60, and 75), this dataset facilitates an extensive assessment of object detection performance under varying conditions of sparsity and noise suppression. We benchmark state-of-the-art detection architectures—including YOLOv4, YOLOv7, EfficientDet-b0, MobileNet-v1, and Histogram of Oriented Gradients (HOG)—to experiment upon the nuanced impact of threshold selection on detection performance. By offering a systematic approach to threshold variation, we foresee that EBCD fosters a more adaptive evaluation of event-based object detection, aligning diverse neuromorphic vision with real-world scene dynamics. We present the dataset as publicly available to propel further advancements in low-latency, high-fidelity neuromorphic imaging.
DOI: 10.15468/xtppux
title: RBINS Crustacea collection

description: The RBINS has a rich collection of crustaceans. Within the class Malacostraca, we have large collections of decapods (crabs, shrimps, etc.), Euphausiacea (krill), Amphipoda (including eye-catching material from Antarctica), Cumacea (hooded shrimps), Isopoda, Mysida (opossum shrimps), and Tanaidae. Within the class Maxillopoda, our collection of copepods can safely be called impressive, with material from all over the world. The same is true of the class Ostracoda (seed shrimps), which has important freshwater and marine collections. Also the Branchiopoda (fairy shrimps, water fleas, etc.) are part of RBINS Recent Invertebrates collection.
In total, the RBINS holds more than 210,000 crustacean specimens, including a 7800-some types.
DOI: 10.6084/m9.figshare.28590197
title: Brownbanded bamboo shark gene models (.gz)

description: Gene models inferred with Braker3 on the genome assembly sChiPun1.3
DOI: 10.6084/m9.figshare.28590197.v1
title: Brownbanded bamboo shark gene models (.gz)

description: Gene models inferred with Braker3 on the genome assembly sChiPun1.3
DOI: 10.15468/5y77yc
title: RBINS Reptile collection

description: The RBINS holds more 45,000 reptilian specimens, and type material for 183 species. The majority of the specimens were collected by Gaston-François de Witte during his missions to the national parks in Congo. Philippe Kok has also put together a fine collection of reptiles from Guyana. Biologist Olivier Pauwels has added material to the South East Asia and Gabon collections, and his colleagues Benoit Mys, J. Swerts and Jan Hulselmans have contributed a significant collection of reptile species from Papua New Guinea.
DOI: 10.5281/zenodo.14967738
title: Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver: snRNA-seq FASTQ Female rAAV2-Treated Animal 252

description: You can find here the FASTQ files related to the datasets used in the publication: 

Amberg, B. et al.  Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver

In this particular upload, you can find the snRNA-seq  FASTQ files of the female rAAV2-treated animal 252.
DOI: 10.5281/zenodo.14967739
title: Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver: snRNA-seq FASTQ Female rAAV2-Treated Animal 252

description: You can find here the FASTQ files related to the datasets used in the publication: 

Amberg, B. et al.  Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver

In this particular upload, you can find the snRNA-seq  FASTQ files of the female rAAV2-treated animal 252.
DOI: 10.5281/zenodo.14967810
title: Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver: snRNA-seq FASTQ Female rAAV2-Treated Animal 253

description: You can find here the FASTQ files related to the datasets used in the publication: 

Amberg, B. et al.  Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver

In this particular upload, you can find the snRNA-seq  FASTQ files of the female rAAV2-treated animal 253.
DOI: 10.5281/zenodo.14967809
title: Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver: snRNA-seq FASTQ Female rAAV2-Treated Animal 253

description: You can find here the FASTQ files related to the datasets used in the publication: 

Amberg, B. et al.  Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver

In this particular upload, you can find the snRNA-seq  FASTQ files of the female rAAV2-treated animal 253.
DOI: 10.5281/zenodo.14967854
title: Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver: snRNA-seq FASTQ Female rAAV2-Treated Animal 254

description: You can find here the FASTQ files related to the datasets used in the publication: 

Amberg, B. et al.  Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver

In this particular upload, you can find the snRNA-seq  FASTQ files of the female rAAV2-treated animal 254.
DOI: 10.5281/zenodo.14967855
title: Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver: snRNA-seq FASTQ Female rAAV2-Treated Animal 254

description: You can find here the FASTQ files related to the datasets used in the publication: 

Amberg, B. et al.  Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver

In this particular upload, you can find the snRNA-seq  FASTQ files of the female rAAV2-treated animal 254.
DOI: 10.6084/m9.figshare.28589684
title: Brownbanded bamboo shark gene models (not .gz)

description: Gene models inferred with Braker3 on the genome assembly sChiPun1.3. A .gz file is also available under the same FigShare project.
DOI: 10.6084/m9.figshare.28589684.v2
title: Brownbanded bamboo shark gene models (not .gz)

description: Gene models inferred with Braker3 on the genome assembly sChiPun1.3. A .gz file is also available under the same FigShare project.
DOI: 10.15468/dl.v27pm7
title: Occurrence Download

description: A dataset containing 806 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Korea, Republic of",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bombina orientalis (Boulenger, 1890)",
 "Year 2020-2025"
 ]
}

 The dataset includes 806 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007029-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14967891
title: Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver: snRNA-seq FASTQ Male rAAV9-Treated Animal 302

description: You can find here the FASTQ files related to the datasets used in the publication: 

Amberg, B. et al.  Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver

In this particular upload, you can find the snRNA-seq  FASTQ files of the male rAAV9-treated animal 302.
DOI: 10.5281/zenodo.14967892
title: Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver: snRNA-seq FASTQ Male rAAV9-Treated Animal 302

description: You can find here the FASTQ files related to the datasets used in the publication: 

Amberg, B. et al.  Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver

In this particular upload, you can find the snRNA-seq  FASTQ files of the male rAAV9-treated animal 302.
DOI: 10.5281/zenodo.15019569
title: Fig. 2 of arxiv:2411.08095
DOI: 10.5281/zenodo.15019570
title: Fig. 2 of arxiv:2411.08095
DOI: 10.5281/zenodo.14967899
title: Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver: snRNA-seq FASTQ Male rAAV9-Treated Animal 303

description: You can find here the FASTQ files related to the datasets used in the publication: 

Amberg, B. et al.  Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver

In this particular upload, you can find the snRNA-seq  FASTQ files of the male rAAV9-treated animal 303.
DOI: 10.5281/zenodo.14967900
title: Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver: snRNA-seq FASTQ Male rAAV9-Treated Animal 303

description: You can find here the FASTQ files related to the datasets used in the publication: 

Amberg, B. et al.  Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver

In this particular upload, you can find the snRNA-seq  FASTQ files of the male rAAV9-treated animal 303.
DOI: 10.5281/zenodo.15006915
title: Rydberg atom van der Waals interaction, C6 calulations - angular channel precalculated values
title: Data for "Unravelling the Structures in the van der Waals Interactions of Alkali Rydberg Atoms", Alkali-Rydber-Calculator

description: Precalculated angular channel values to compute the C6 interaction coefficients for vdW interaction between Rydberg atoms.

The data can be utilised via the Alkali Rydberg Calculator (ARC), usage examples can be found on ARCs GitHub page, or here: https://github.com/KarenWadenpfuhl/ARC-Alkali-Rydberg-Calculator/blob/master/doc/ARC_angularChannels.ipynb

The physics underlying the angular channel approach is outlined here: Unravelling the Structures in the van der Waals Interactions of Alkali Rydberg Atoms.

Data type is HDF5 with associated metadata.

We provide data for Rb-Rb and Cs-Cs pair states with n1, n2 in range 20-120 and angular quantum numbers L in {S, P, D, F}. Other atomic species combinations, also cross-species interactions like Rb-Cs, or for different principla quantum numbers n1, n2, or for different angular quantum numbers L1, L2, can be computed by the user. Appropriate functions are provided via ARC. An example Jupyter notebook detailling how to download the precalculated data, and generally how to use the angular channel functions, can be found here: https://github.com/KarenWadenpfuhl/ARC-Alkali-Rydberg-Calculator/blob/master/doc/ARC_angularChannels.ipynb
DOI: 10.15468/dl.gqm99w
title: Occurrence Download

description: A dataset containing 799 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Proteinus atomarius Erichson, 1840",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 799 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007030-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15006914
title: Rydberg atom van der Waals interaction, C6 calulations - angular channel precalculated values
title: Data for "Unravelling the Structures in the van der Waals Interactions of Alkali Rydberg Atoms", Alkali-Rydber-Calculator

description: Precalculated angular channel values to compute the C6 interaction coefficients for vdW interaction between Rydberg atoms.

The data can be utilised via the Alkali Rydberg Calculator (ARC), usage examples can be found on ARCs GitHub page, or here: https://github.com/KarenWadenpfuhl/ARC-Alkali-Rydberg-Calculator/blob/master/doc/ARC_angularChannels.ipynb

The physics underlying the angular channel approach is outlined here: Unravelling the Structures in the van der Waals Interactions of Alkali Rydberg Atoms.

Data type is HDF5 with associated metadata.

We provide data for Rb-Rb and Cs-Cs pair states with n1, n2 in range 20-120 and angular quantum numbers L in {S, P, D, F}. Other atomic species combinations, also cross-species interactions like Rb-Cs, or for different principla quantum numbers n1, n2, or for different angular quantum numbers L1, L2, can be computed by the user. Appropriate functions are provided via ARC. An example Jupyter notebook detailling how to download the precalculated data, and generally how to use the angular channel functions, can be found here: https://github.com/KarenWadenpfuhl/ARC-Alkali-Rydberg-Calculator/blob/master/doc/ARC_angularChannels.ipynb
DOI: 10.5281/zenodo.14967950
title: Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver: snRNA-seq FASTQ Male rAAV9-Treated Animal 304

description: You can find here the FASTQ files related to the datasets used in the publication: 

Amberg, B. et al.  Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver

In this particular upload, you can find the snRNA-seq  FASTQ files of the male rAAV9-treated animal 304.
DOI: 10.5281/zenodo.14967951
title: Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver: snRNA-seq FASTQ Male rAAV9-Treated Animal 304

description: You can find here the FASTQ files related to the datasets used in the publication: 

Amberg, B. et al.  Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver

In this particular upload, you can find the snRNA-seq  FASTQ files of the male rAAV9-treated animal 304.
DOI: 10.5281/zenodo.14968051
title: Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver: snRNA-seq FASTQ Male rAAV9-Treated Animal 305

description: You can find here the FASTQ files related to the datasets used in the publication: 

Amberg, B. et al.  Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver

In this particular upload, you can find the snRNA-seq  FASTQ files of the male rAAV9-treated animal 305.
DOI: 10.5281/zenodo.14968052
title: Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver: snRNA-seq FASTQ Male rAAV9-Treated Animal 305

description: You can find here the FASTQ files related to the datasets used in the publication: 

Amberg, B. et al.  Spatial Transcriptomics and Single Nucleus RNA Sequencing Reveal rAAV2- and rAAV9-Specific Transduction Signatures in the Mouse Liver

In this particular upload, you can find the snRNA-seq  FASTQ files of the male rAAV9-treated animal 305.
DOI: 10.15468/dl.9wbs24
title: Occurrence Download

description: A dataset containing 354 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudemys concinna suwanniensis Carr, 1937"
 ]
}

 The dataset includes 354 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007031-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.