cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5441/001/1.1q2c075p/1
title: Home range and movement patterns of the Andean Fox in Cotopaxi National Park Ecuador

description: Castellanos A, Castellanos F, Kays R, Brito J. A pilot study on the home range and movement patterns of the Andean Fox Lycalopex culpaeus (Molina, 1782) in Cotopaxi National Park, Ecuador: . Mammalia. 2021;(): 000010151520200195.
description: This study reports movement patterns and home range estimates of an Andean fox (Lycalopex culpaeus) in Cotopaxi National Park in Ecuador, representing the first GPS-tagging of the species. The GPS functioned well during the 197-day tracking period. Home range sizes ranged between 4.9 and 8.1 km2, depending on the estimation method. Movement speeds averaged 0.17 km/h at day versus 0.87 km/h at night, and distance traveled averaged 0.23 km at day versus 0.89 km at night. These preliminary results highlight the importance of collecting unbiased, high-quality data which enables an enhanced understanding on mammal behavior and human/animal interaction.
DOI: 10.5441/001/1.1q2c075p/2
title: Home range and movement patterns of the Andean Fox in Cotopaxi National Park Ecuador-reference-data

description: Castellanos A, Castellanos F, Kays R, Brito J. A pilot study on the home range and movement patterns of the Andean Fox Lycalopex culpaeus (Molina, 1782) in Cotopaxi National Park, Ecuador: . Mammalia. 2021;(): 000010151520200195.
description: This study reports movement patterns and home range estimates of an Andean fox (Lycalopex culpaeus) in Cotopaxi National Park in Ecuador, representing the first GPS-tagging of the species. The GPS functioned well during the 197-day tracking period. Home range sizes ranged between 4.9 and 8.1 km2, depending on the estimation method. Movement speeds averaged 0.17 km/h at day versus 0.87 km/h at night, and distance traveled averaged 0.23 km at day versus 0.89 km at night. These preliminary results highlight the importance of collecting unbiased, high-quality data which enables an enhanced understanding on mammal behavior and human/animal interaction.
DOI: 10.5281/zenodo.5362675
title: Formation of NH2CHO and CH3CHO upon UV processing of interstellar ice analogs

description: Complex organic molecules (COMs) may have played a role in the formation of life in the early Earth (Herbst & van Dishoeck (2009)). In Martin-Domenech et al. (2020) we presented the formation of NH2CHO and CH3CHO upon vacuum-ultraviolet (VUV) irradiation of CO:NH3 and CO:CH4 ice mixtures, simulating the UV processing of interstellar ices in the interior of dense clouds. We found that the conversion from NH2˙ radicals to NH2CHO is 2-16 times higher than that from CH3˙ to CH3CHO, probably due to the competing formation of larger hydrocarbons in the latter case. Here, we present all the infrared spectra and temperature programmed desorption data corresponding to the 30 experiments listed in the above publication.
description: Funded by an award from the Simons Foundation (SCOL # 321183, KO)
DOI: 10.5281/zenodo.5363483
title: Exploring the Chemistry Induced by Energetic Processing of the H2-bearing, CO-rich Apolar Ice Layer

description: Interstellar ice mantles on the surfaces of dust grains are thought to have a bilayered structure, with a H2O-rich polar layer, covered by a CO-rich apolar layer that probably harbors H2 and other volatiles such as N2. In this work, we explored the chemistry induced by 2 keV electrons and Lyα photons in H2:CO:15N2 ice analogs of the CO-rich layer when exposed to similar fluences to those expected from the cosmic-ray-induced secondary electrons and UV photons during the typical lifetime of dense clouds. Six products were identified upon 2 keV electron irradiation: CO2, C2O (and other carbon chain oxides), CH4, H2CO, H2C2O, and H15NCO. The total product abundances corresponded to 5%-10% of the initial CO molecules exposed to electron irradiation. Lyα photon irradiation delivered one to two orders of magnitude lower yields with a similar product branching ratio, which may be due to the low UV-photon absorption cross section of the ice sample at this wavelength. Formation of additional N-bearing species, namely C215N2 and 15NH3, was only observed in the absence of H2 and CO molecules, respectively, suggesting that reactants derived from H2 and CO molecules preferentially react with each other instead of with 15N2 and its dissociation products. In summary, ice chemistry induced by energetic processing of the CO-rich apolar ice layer provides alternative formation pathways for several species detected in the interstellar medium, including some related to the complex organic molecule chemistry. Here, we present all the IR spectra and temperature programmed desorption data for the 16 experiments that were used for this publication (Exp. 1-14, A1,A2), along with 7 additional calibration experiments (C1-C7). Please, note that all infrared spectra are taken in reflection-absorption mode, except for those corresponding to Experiments C1-C7, taken in transmittance mode.
description: This work was supported by an award from the SimonsFoundation (SCOL # 321183, KO)
DOI: 10.5281/zenodo.5362674
title: Formation of NH2CHO and CH3CHO upon UV processing of interstellar ice analogs

description: Complex organic molecules (COMs) may have played a role in the formation of life in the early Earth (Herbst & van Dishoeck (2009)). In Martin-Domenech et al. (2020) we presented the formation of NH2CHO and CH3CHO upon vacuum-ultraviolet (VUV) irradiation of CO:NH3 and CO:CH4 ice mixtures, simulating the UV processing of interstellar ices in the interior of dense clouds. We found that the conversion from NH2˙ radicals to NH2CHO is 2-16 times higher than that from CH3˙ to CH3CHO, probably due to the competing formation of larger hydrocarbons in the latter case. Here, we present all the infrared spectra and temperature programmed desorption data corresponding to the 30 experiments listed in the above publication.
description: Funded by an award from the Simons Foundation (SCOL # 321183, KO)
DOI: 10.5281/zenodo.5363482
title: Exploring the Chemistry Induced by Energetic Processing of the H2-bearing, CO-rich Apolar Ice Layer

description: Interstellar ice mantles on the surfaces of dust grains are thought to have a bilayered structure, with a H2O-rich polar layer, covered by a CO-rich apolar layer that probably harbors H2 and other volatiles such as N2. In this work, we explored the chemistry induced by 2 keV electrons and Lyα photons in H2:CO:15N2 ice analogs of the CO-rich layer when exposed to similar fluences to those expected from the cosmic-ray-induced secondary electrons and UV photons during the typical lifetime of dense clouds. Six products were identified upon 2 keV electron irradiation: CO2, C2O (and other carbon chain oxides), CH4, H2CO, H2C2O, and H15NCO. The total product abundances corresponded to 5%-10% of the initial CO molecules exposed to electron irradiation. Lyα photon irradiation delivered one to two orders of magnitude lower yields with a similar product branching ratio, which may be due to the low UV-photon absorption cross section of the ice sample at this wavelength. Formation of additional N-bearing species, namely C215N2 and 15NH3, was only observed in the absence of H2 and CO molecules, respectively, suggesting that reactants derived from H2 and CO molecules preferentially react with each other instead of with 15N2 and its dissociation products. In summary, ice chemistry induced by energetic processing of the CO-rich apolar ice layer provides alternative formation pathways for several species detected in the interstellar medium, including some related to the complex organic molecule chemistry. Here, we present all the IR spectra and temperature programmed desorption data for the 16 experiments that were used for this publication (Exp. 1-14, A1,A2), along with 7 additional calibration experiments (C1-C7). Please, note that all infrared spectra are taken in reflection-absorption mode, except for those corresponding to Experiments C1-C7, taken in transmittance mode.
description: This work was supported by an award from the SimonsFoundation (SCOL # 321183, KO)
DOI: 10.15468/9j9ptj
title: The Smicridea (Smicridea) fasciatella species group (Trichoptera: Hydropsychidae) in Brazil: six new species and new distributional records

description: This dataset contains the digitized treatments in Plazi based on the original journal article Desiderio, Gleison Robson, Pes, Ana Maria, Andrade-Souza, Vanderly, Hamada, Neusa (2021): The Smicridea (Smicridea) fasciatella species group (Trichoptera: Hydropsychidae) in Brazil: six new species and new distributional records. European Journal of Taxonomy 750 (1): 156-196, DOI: https://doi.org/10.5852/ejt.2021.750.1371, URL: http://dx.doi.org/10.5852/ejt.2021.750.1371
DOI: 10.6084/m9.figshare.16543821.v1
title: sub-01.rar

description: subj-01<br>
DOI: 10.6084/m9.figshare.16543821
title: sub-01.rar

description: subj-01<br>
DOI: 10.6084/m9.figshare.16543827
title: subj-02.rar

description: subj-02.rar
DOI: 10.6084/m9.figshare.16543827.v1
title: subj-02.rar

description: subj-02.rar
DOI: 10.6084/m9.figshare.16543833
title: subj-03.rar

description: subj-03
DOI: 10.6084/m9.figshare.16543833.v1
title: subj-03.rar

description: subj-03
DOI: 10.5281/zenodo.5362218
title: trajectories for: Membrane-binding mechanism of the EEA1 FYVE domain revealed by multi-scale molecular dynamics simulations

description: Coarse-grained trajectories produced and analysed for publication: ---------------------- Membrane-binding mechanism of the EEA1 FYVE domain revealed by multi-scale molecular dynamics simulations Andreas Haahr Larsen*, Lilya Tata*, Laura John & Mark S.P. Sansom Department of Biochemistry, University of Oxford, Oxford, United Kingdom, OX1 3QU PLOS comp biol (in press) ------------------------- ** file overview** md_X.xtc: (X=0..14) 15 repeated CG simulations (1500 ns each) of the FYVE domain from EEA1 binding to POPC:POP1 bilayer. The repeats differ in the rotation of the initial frame.<br> final_cg2at_aligned.pdb: initial frame for AT (after CG2AT) prod_cym_cent_repX.xtc (X=1,2,3) 3 repeated AT sims (500 ns each) of the FYVE domain from EEA1 binding to POPC:POP1 bilayer. ** scripts for reproduction at GitHub** scripts and files for reproduction are available at: https://github.com/andreashlarsen/Larsen-Tata2021-FYVE
DOI: 10.5281/zenodo.5362217
title: trajectories for: Membrane-binding mechanism of the EEA1 FYVE domain revealed by multi-scale molecular dynamics simulations

description: Coarse-grained trajectories produced and analysed for publication: ---------------------- Membrane-binding mechanism of the EEA1 FYVE domain revealed by multi-scale molecular dynamics simulations Andreas Haahr Larsen*, Lilya Tata*, Laura John & Mark S.P. Sansom Department of Biochemistry, University of Oxford, Oxford, United Kingdom, OX1 3QU PLOS comp biol (in press) ------------------------- ** file overview** md_X.xtc: (X=0..14) 15 repeated CG simulations (1500 ns each) of the FYVE domain from EEA1 binding to POPC:POP1 bilayer. The repeats differ in the rotation of the initial frame.<br> final_cg2at_aligned.pdb: initial frame for AT (after CG2AT) prod_cym_cent_repX.xtc (X=1,2,3) 3 repeated AT sims (500 ns each) of the FYVE domain from EEA1 binding to POPC:POP1 bilayer. ** scripts for reproduction at GitHub** scripts and files for reproduction are available at: https://github.com/andreashlarsen/Larsen-Tata2021-FYVE
DOI: 10.6084/m9.figshare.16543839.v1
title: subj-04.rar

description: subj-04
DOI: 10.6084/m9.figshare.16543839
title: subj-04.rar

description: subj-04
DOI: 10.6084/m9.figshare.16557063
title: subj-05.rar

description: subj-05
DOI: 10.6084/m9.figshare.16557063.v1
title: subj-05.rar

description: subj-05
DOI: 10.6084/m9.figshare.16557081
title: sub-06.rar

description: subj-06
DOI: 10.6084/m9.figshare.16557081.v1
title: sub-06.rar

description: subj-06
DOI: 10.6084/m9.figshare.16557087
title: sub-07.rar

description: sub-07
DOI: 10.6084/m9.figshare.16557087.v1
title: sub-07.rar

description: sub-07
DOI: 10.15468/3u44cg
title: Annotated checklist and distribution of the lizards of Iran

description: This dataset contains the digitized treatments in Plazi based on the original journal article Šmíd, Jiří, Moravec, Jiří, Kodym, Petr, Kratochvíl, Lukáš, Yousefkhani, Seyyed Saeed Hosseinian, Rastegar-Pouyani, Eskandar, Frynta, Daniel (2014): Annotated checklist and distribution of the lizards of Iran. Zootaxa 3855 (1): 1-97, DOI: http://dx.doi.org/10.11646/zootaxa.3855.1.1
DOI: 10.6084/m9.figshare.16557090
title: sub-08.rar

description: sub-08
DOI: 10.6084/m9.figshare.16557090.v1
title: sub-08.rar

description: sub-08
DOI: 10.6084/m9.figshare.16557177
title: sub-09.rar

description: sub-09
DOI: 10.6084/m9.figshare.16557177.v1
title: sub-09.rar

description: sub-09
DOI: 10.6084/m9.figshare.16557594
title: sub-10.rar

description: sub-10
DOI: 10.6084/m9.figshare.16557594.v1
title: sub-10.rar

description: sub-10
DOI: 10.6084/m9.figshare.16559337
title: Raw data on optical parameters of dissolved organic matter in Kuroshio-Oyashio confluence region

description: Raw data on optical parameters of dissolved organic matter in Kuroshio-Oyashio confluence region that are for understanding different water mass mixing
DOI: 10.6084/m9.figshare.16559337.v1
title: Raw data on optical parameters of dissolved organic matter in Kuroshio-Oyashio confluence region

description: Raw data on optical parameters of dissolved organic matter in Kuroshio-Oyashio confluence region that are for understanding different water mass mixing
DOI: 10.6084/m9.figshare.16557612
title: sub-11.rar

description: sub-11
DOI: 10.6084/m9.figshare.16557612.v1
title: sub-11.rar

description: sub-11
DOI: 10.5281/zenodo.5385481
title: Linear-time Temporal Logic guided Greybox Fuzzing

description: The LTL-Fuzzer tool, built on top of the AFL fuzzer, is found to be effective in detecting bugs in well-known protocol implementations, such as OpenSSL and Telnet. We use LTL-Fuzzer to reproduce known vulnerabilities (CVEs), to find new or zero-day bugs by checking properties extracted from RFCs (for which CVEs have been assigned), and to find violations of both safety as well as liveness properties in real-world protocol implementations. This package contains the LTL-Fuzzer tool and data-set in our experiments.
DOI: 10.6084/m9.figshare.16557615
title: sub-12.rar

description: sub-12
DOI: 10.6084/m9.figshare.16557615.v1
title: sub-12.rar

description: sub-12
DOI: 10.5281/zenodo.5230532
title: Input Data for C-BREC Model v1.2.1

description: This represents the necessary input data for running the California Biomass Residue Emissions Characterization (C-BREC) Model. This is supplemental data for C-BREC release v1.2.1. The C-BREC Model code can be found on GitHub at https://github.com/schatzcenter/CBREC.
DOI: 10.5281/zenodo.5230531
title: Input Data for C-BREC Model v1.2.1

description: This represents the necessary input data for running the California Biomass Residue Emissions Characterization (C-BREC) Model. This is supplemental data for C-BREC release v1.2.1. The C-BREC Model code can be found on GitHub at https://github.com/schatzcenter/CBREC.
DOI: 10.15128/r19k41zd540
title: Khandaq Shapur [dataset]

description: Supplementary Materials File S1 in the research in: de Gruchy, M. et al. (submitted) "The Khandaq Shapur: Defense, Irrigation, Boundary, Frontier." Land.
DOI: 10.25416/ntr.16559355
title: Communicating Impact and Value.pdf

description: A compilation of advice to support colleagues as they communicate the impact and value of their learning and teaching practice. Particularly useful for individuals who are building a claim for fellowship.
DOI: 10.25345/c50j9f
title: MassIVE MSV000088045 - 20210902-qiuyanping-RiPPs-shanghai institution of organic chemistry
title: RiPPs-thioamide analysis and this is a first try. shanghai institution of organic chemistry qiuyanping
DOI: 10.5281/zenodo.5385415
title: How morphological decomposition manifests itself in the duration of the inter-morpheme period of silence in Russian prefixed verbs

description: Files necessary to replicate the study findings.
DOI: 10.5281/zenodo.5385414
title: How morphological decomposition manifests itself in the duration of the inter-morpheme period of silence in Russian prefixed verbs

description: Files necessary to replicate the study findings.
DOI: 10.5519/qd.8o1v5v3l
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (547 records)
DOI: 10.6073/pasta/b7dd1a33d23ed133df473a7e7929df2e
title: Stand and Community Response to Hemlock Woolly Adelgid in Southern New England since 1995

description: Hemlock woolly adelgid (HWA), Adelges tsugae, an introduced aphid-like insect from Asia, is expanding its range across the northeastern United States through the range of Tsuga canadensis (eastern hemlock) and can severely reduce or eliminate this important late-successional species. As part of a study investigating stand- and landscape-level forest dynamics resulting from HWA infestation, we examined initial community response of eight T. canadensis stands in south-central Connecticut and then continued to monitor these stands every other year. Our major objectives were to assess mortality patterns in T. canadensis, evaluate subsequent changes in stand microenvironment, and relate these and stand composition to initial patterns of regeneration, understory response, and community reorganization. Tsuga canadensis damage varied broadly across the study area ranging from near zero to greater than 95 % mortality. All size and age classes sampled were attacked by HWA, although smaller trees exhibited higher mortality rates than larger trees. All remaining T. canadensis sampled in seven of the eight stands were infested with HWA and over 90 % suffered at least 50 % foliar loss. Since 1995, overstory and understory mortality has risen 5 to 15 % per year to overall values of 50 to 99%. There has been no sign of tree recovery and the health and vigor of remaining trees deteriorated in all infested stands. Results suggest that trees on some sites can remain alive for over 10 years following initial infestation and remain standing for 6 to 8 years following mortality. Substantial accumulations of downed woody debris have developed in stands with severe HWA damage. Canopy gaps created by HWA damage significantly increased the amount of light reaching the forest floor and resulted in rapid understory vegetation responses. Prolific Betula lenta (black birch) establishment occurred in stands with moderate to severe T. canadensis mortality. In addition, opportunistic herbaceous species (Erechtites hieracifolia, Phytolacca americana) and exotic species (Ailanthus altissima, Microstegium vimineum) have recently invaded these stands. Due to mortality from HWA, T. canadensis seedlings were scarce in sampled stands, suggesting that advance regeneration and seedbanks will not be important mechanisms for T. canadensis reestablishment. Tsuga canadensis cannot sprout following defoliation and has no apparent resistance to HWA. Tree-ring analysis of hardwood and declining hemlock trees, coupled with age-structure analysis of newly established birch saplings was effective in determining the timing of initial HWA impact in stands of unknown infestation date. Over the last 10 years, radial growth of hemlock declined precipitously in most stands, while oak and maple growth exhibited concomitant, large annual increases. Therefore, dramatic reductions in T. canadensis across broad geographical areas appear imminent if HWA dispersal continues unimpeded and no effective natural enemies of HWA are found.
DOI: 10.5281/zenodo.5385623
title: Datasets related to article "Electrophysiological signatures of resting state networks predict cognitive deficits in stroke"

description: DATASET #1 — <strong>Demographical and neurological data</strong> The table shows the demographical (age, gender, education) and neurological (etiology, lesion site, lesion size, time since stroke) information for each patient. Gender: M (male), F (female); Etiology: I (ischemic), H (hemorrhagic); Lesion site: C (capsul); T (temporal); F (frontal); Ta (thalamus); O (occipital); P (parietal); MCA (middle cerebral artery); BG (basal ganglia); I (Insula); Pu (putamen); n.a. (data not available). DATASET #2 — <strong>EEG resting state networks (RSNs) maps</strong> The folder contains the individual unthresholded EEG RSNs maps reconstructed using temporal Independent Component Analysis (ICA) from EEG signals (64 channels). The present maps were extracted for 6 EEG frequency bands: full band (1-80 HZ), delta, theta, alpha, beta and gamma. 14 EEG RSNs were selected on the basis of the spatial overlap with an fMRI-RSN template. DATASET #3 — <strong>Neuropsychological data</strong> The table shows the patients’ scores at neuropsychological tests. The assessment included attentional batteries (Behavioural Inattention Test; Attentional matrices) and scales assessing the cognitive and motor independence in everyday life (Functional Independence Measure). Raven’s progressive matrices were also administered.
DOI: 10.5281/zenodo.5385622
title: Datasets related to article "Electrophysiological signatures of resting state networks predict cognitive deficits in stroke"

description: DATASET #1 — <strong>Demographical and neurological data</strong> The table shows the demographical (age, gender, education) and neurological (etiology, lesion site, lesion size, time since stroke) information for each patient. Gender: M (male), F (female); Etiology: I (ischemic), H (hemorrhagic); Lesion site: C (capsul); T (temporal); F (frontal); Ta (thalamus); O (occipital); P (parietal); MCA (middle cerebral artery); BG (basal ganglia); I (Insula); Pu (putamen); n.a. (data not available). DATASET #2 — <strong>EEG resting state networks (RSNs) maps</strong> The folder contains the individual unthresholded EEG RSNs maps reconstructed using temporal Independent Component Analysis (ICA) from EEG signals (64 channels). The present maps were extracted for 6 EEG frequency bands: full band (1-80 HZ), delta, theta, alpha, beta and gamma. 14 EEG RSNs were selected on the basis of the spatial overlap with an fMRI-RSN template. DATASET #3 — <strong>Neuropsychological data</strong> The table shows the patients’ scores at neuropsychological tests. The assessment included attentional batteries (Behavioural Inattention Test; Attentional matrices) and scales assessing the cognitive and motor independence in everyday life (Functional Independence Measure). Raven’s progressive matrices were also administered.
DOI: 10.6084/m9.figshare.13164320.v1
title: Quantifying the determinants of the genome-wide diversity in Drosophila using iSMC

description: Data used to generate results presented in:<br>Barroso & Dutheil, 2020. Mutation rate variation shapes genome-wide diversity in Drosophila melanogaster.<br><br>Scripts to analyse these data can be found in:<br>https://github.com/gvbarroso/ismc_dm_analyses<br>Instructions on how to reproduce the results can be found in the README file of the above repository.
DOI: 10.15468/dl.dyuh5z
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Octoknema klaineana Pierre"
 ]
}

 The dataset includes 77 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058042-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gd74wn
title: Occurrence Download

description: A dataset containing 916 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Muscari commutatum Guss."
 ]
}

 The dataset includes 916 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058043-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.