cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13768949
title: Data and code: Local hydroclimate alters interpretation of speleothem 𝛿18O records

description: This repository contains PCP-corrected d18O records for stalagmite HH-1, rainfall isotope data from Phong Nha Ke Bang National Park, and code to conduct PCP correction analyses presented and used in E.W. Patterson et al., "Local hydroclimate alters interpretation of speleothem 𝛿18O records". The data can be used to replicate figures and analyses presented in the main text. The O'neil correction was primarily used for analyses in the publication.
DOI: 10.5281/zenodo.8139328
title: DECIMER V2 Benchmark Datasets

description: <strong>A comprehensive benchmark of the DECIMER Image Transformer was conducted using all publicly available OCSR benchmark datasets and DECIMER test datasets. </strong> <strong>USPTO: A set of 5,719 images of chemical structures and the corresponding MOL files (US Patent Office) obtained from the OSRA online presence </strong> <strong>UOB: The dataset of 5,740 images and MOL files of chemical structures developed by the University of Birmingham, United Kingdom, and published alongside MolRec</strong> <strong>CLEF: The Conference and Labs of the Evaluation Forum test set of 992 images and molfiles published in 2012 </strong> <strong>JPO: A subset (450 images and MOL files) of a dataset based on data from the Japanese Patent Office, obtained from the OSRA online presence. Note that this dataset contains many labels (sometimes with Japanese characters) and irregular features, such as variations in the line thickness. Additionally, some images have poor quality and contain a lot of noise.</strong> <strong>RanDepict250k: A set of 250,000 chemical structure depictions generated with RanDepict (1.0.8) using RanDepict’s depiction feature fingerprints to ensure diverse depiction parameters. None of the depicted molecules is present in the DECIMER training data. The images here are all 299 x 299 pixels in size.</strong> <strong>RanDepict250k_augmented: A set of the same 250,000 images from the RanDepict250k dataset. Additional augmentations (examples: mild rotation, shearing, insertion of labels and reaction arrows around the structures, insertion of curved arrows in the structure) were added to the images using RanDepict. The images here are all 299 x 299 pixels in size.</strong> <strong>DECIMER hand-drawn: A set of 5,088 chemical structure depictions which were manually drawn by a group of 24 volunteers. The drawn molecules have been picked using the MaxMin algorithm from all molecules in PubChem so that the set represents a big part of the chemical space.</strong> <strong>Indigo: 50,000 images generated by Staker et al. using Indigowhich were collected from the supplementary information. All images have a resolution of 224 x 224 pixels.</strong> <strong>USPTO_big: 50,000 images from the USPTO from Staker et al. which were collected from the supplementary information. All images have a resolution of 224 x 224 pixels.</strong> <strong>Img2Mol test set: A set of 25,000 chemical structure depictions used by Clévert et al. for testing . All images have a resolution of 224 x 224 pixels.</strong>
DOI: 10.5285/d30fa109-67e0-4c1d-8da9-c443834a366d
title: Medium resolution vector polygons of the Antarctic coastline - VERSION 7.5

description: Coastline for Antarctica created from various mapping and remote sensing sources, provided as polygons with 'land', 'ice shelf', 'ice tongue' or 'rumple' attribute. Covering all land and ice shelves south of 60S. Suitable for topographic mapping and analysis. This dataset has been generalised from the high resolution vector polygons. Medium resolution versions of ADD data are suitable for scales smaller than 1:1,000,000, although certain regions will appear more detailed than others due to variable data availability and coastline characteristics. Major changes in v7.5 include updates to ice shelf fronts in the following regions: Seal Nunataks and Scar Inlet region, the Ronne-Filchner Ice Shelf, between the Brunt Ice Shelf and Riiser-Larsen Peninsula, the Shackleton and Conger ice shelves, and Crosson, Thwaites and Pine Island. Small areas of grounding line and ice coastlines were also updated in some of these regions as needed. Data compiled, managed and distributed by the Mapping and Geographic Information Centre and the UK Polar Data Centre, British Antarctic Survey on behalf of the Scientific Committee on Antarctic Research.
description: Dataset compiled from a variety of Antarctic map and satellite image sources. The dataset was created using ArcGIS and QGIS GIS software programmes and has been checked for basic topography and geometry checks, but does not contain strict topology. Quality varies across the dataset and certain areas where high resolution source data were available are suitable for large scale maps whereas other areas are only suitable for smaller scales. Each polygon contains a 'surface' attribute with either 'land', 'ice shelf', 'ice tongue' or 'rumple'. Details of when and how each line was created can be found in the attributes of the high or medium resolution polyline coastline dataset. Data sources range in time from 1990s-2022 - individual lines contain exact source dates. This medium resolution version has been generalised from the high resolution version. All polygons inferior to 0.1 km2 not intersecting anything else were deleted and the 'simplify' tool was used in ArcGIS with the 'point remove' algorithm and a smoothing tolerance of 50 m.
DOI: 10.5441/002/edbt.2019.96
title: Fast Truss Decomposition in Large-scale Probabilistic Graphs
DOI: 10.6073/pasta/15d5120fb4f7b79811b16287eae15a35
title: MCR LTER: Coral Reef: Long-term Population and Community Dynamics: Corals, ongoing since 2005

description: This dataset contains the percentage cover of the stony corals (Scleractinia) and other major groups analyzed from 0.5 x 0.5 m photographic quadrats in several reef habitats at the Moorea Coral Reef LTER, French Polynesia. This survey has been repeated annually in April since 2005. There are two tables available, providing different views of the same data: a long table having all values in one column and a wide table having a separate column for each dependent variable. Functional groups (i.e., dependent variables) counted are: Scleractinian Corals (by genus where appropriate, see methods), Macroalgae, Crustose Coralline Algae / Bare Space, Soft Corals, Hydrocorals (Millepora), Algal Turf, and Sand. The coral community was sampled photographically in all habitats surrounding the island: Fringing Reef, Lagoon (Backreef), and Outer Reef (Forereef.) The sampling regime consists of a repeated-measures protocol in each habitat and is structured by habitat to allow a statistical contrast of sites, shores, times, and in the case of the outer reef, depths. Detailed methods are available in the protocols section.
 This material uses data collected by the U.S. National Science Foundation's (NSF) Moorea Coral Reef Long Term Ecological Research (MCR LTER) site under Grant No. OCE 2224354 (and earlier awards). Additional financial support to the MCR LTER site was provided through a generous gift from the Gordon and Betty Moore Foundation. Research was completed under permits issued by the French Polynesian Government (Délégation à la Recherche) and the Haut-commissariat de la République en Polynésie Francaise (DTRT) (Protocole d'Accueil 2005-2024).
DOI: 10.6084/m9.figshare.22696279
title: Data and code for "Diversity, distribution and intrinsic extinction vulnerability of exploited marine bivalves"

description: The main data used in our analyses have been published with the paper. Here in this repository we provide the R script for reproduing the figures and tables, the model outputs, and a shape file of the global grid system used for the grid occurrence data and for producing biogeographic figures.
DOI: 10.6084/m9.figshare.23579262.v2
title: Data in support of "Colloidal diffusiophoresis in crossed electrolyte gradients: experimental demonstration of an `action at a distance' effect predicted by the Nernst-Planck equations"

description: Experimental and modeling data used in the article "Colloidal diffusiophoresis in crossed electrolyte gradients: experimental demonstration of an `action at a distance' effect predicted by the Nernst-Planck equations" by Ian Williams, Patrick B. Warren, Richard P. Sear, and Joseph L. Keddie.
DOI: 10.6084/m9.figshare.24794955
title: Trajectories of non-productive attempts at thermally activated energy-barrier crossing for beads and DNA hairpin 30R50/T4

description: Single-molecule measurements of (i) an optically trapped bead, (ii) the DNA hairpin 30R50/T4, and (iii) a DNA reference construct lacking the hairpin, all measured with optical tweezers. All data files are formatted as space-delimited text, containing columns or rows of data representing the position of the bead along the reaction axis or the extension of the DNA molecule (all values in nm). Each folder contains data from two types of measurement: (a) files ending in "SampleTrajectory.txt", which contain single columns of data representing a segment of the full trajectory, and (b) files ending in "Fluctuations.txt" or "TransitionPaths.txt," which contain segments of the trajectories corresponding to nonproductive fluctuations or transition paths, respectively (individual fluctuations/transition paths are listed in space-delimited rows). All data were sampled at 1 MHz. For the DNA hairpin and the reference construct, the measurement modality (constant force or high stiffness) is listed in the folder containing the data, and also noted in the filename (as "CF" or "HS", respectively). For the DNA hairpin and the reference construct, the data for each molecule is found within a subfolder containing the molecule number (e.g. "Molecule 1") and an identifier is also included in the filename (e.g. "Mol1"). Additional data are available from the authors if needed.
DOI: 10.6084/m9.figshare.27178791
title: Supplementary Material for: Keratoderma-like T Cell Dyscrasia: A Case Report

description: Introduction: Cutaneous T-cell dyscrasia (CTCD) encompasses a heterogeneous group of T-cell infiltrates, often clonal and epitheliotropic. While the etiology remains unclear, certain medications, including statins, have been linked to CTCL development. Case Description: A patient presented with a pruritic, scaly eruption on her palms and soles unresponsive to topical steroids for one month. Histopathological examination revealed compact orthokeratosis, mild lymphocytic infiltrate with focal exocytosis, and atypical lymphocytes. Immunophenotyping demonstrated a predominance of CD3+ T-cells with a 1:1 CD4/CD8 ratio and reduced CD7 expression. The clinical presentation, histopathology, and immunophenotype supported a diagnosis of statin-induced CTCD. Conclusion: Statin discontinuation led to complete symptom resolution, emphasizing the reversibility of drug-induced T-cell dyscrasia. This case highlights the importance of a detailed medication history, as drug-induced T-cell dyscrasia, unlike classic CTCD with its characteristic lymphoid atypia, phenotypic abnormalities, and clonality leading to a refractory course, can be reversed by drug withdrawal.
DOI: 10.18112/openneuro.ds003020.v2.0.0
title: An fMRI dataset during a passive natural language listening task
DOI: 10.20350/digitalcsic/16340
title: Ptychodera flava genomics and transcriptomics data

description: [Description of methods used for collection/generation of data] ATACseq and RNAseq methodology in different developmental stages
description: Analysis of the transcriptomes and chromatin accessibility of multiple developmental stages of the indirect-developing hemichordate Ptychodera flava. After the individual analysis of each sample, integration of ATACseq and RNAseq data was performed in order to reconstruct genetic and regulatory networks. These data were also compared to other species, what could shed light on deuterostome evolution.
description: supp_data_01.xlsx supp_data_02.xlsx supp_data_03.xlsx supp_data_04.xlsx supp_data_05.xlsx supp_data_06.xlsx supp_data_07.xlsx supp_data_08.xlsx supp_data_09.bed supp_data_10.tsv supp_data_11.tsv.gz supp_data_12.tsv.gz supp_data_13.xlsx supp_data_14.xlsx supp_data_15.xlsx supp_data_16.xlsx
DOI: 10.34740/kaggle/dsv/1199870
title: SARS-COV-2 Ct-Scan Dataset
DOI: 10.4227/166/5a8647d1c23e0
title: Australian Gridded Climate Data ( AGCD ) / AWAP ; v1.0.0 Snapshot (1900-01-01 to 2018-12-31)

description: Gridded climate data of site-based surface observations or satellite data. Time coverage: Site-based data are used to provide gridded climate data at the daily and monthly timescale for rainfall (1900+), maximum and minimum temperature (1910+), 9am and 3pm vapour pressure (1971+). . Spatial coverage: The data encompasses the Australian continent and Tasmania. For this dataset (delivered publicly) - the dataset is reproducible from the same starting data using the code described in each file's metadata. Point of truth URL of authoritative version of this resource's metadata record is [ http://www.bom.gov.au/metadata/19115/ANZCW0503900567 ]. Additional background information is available in the paper by Jones,D., Wang, W. and Fawcett, R. [2009] "High-quality spatial climate data-sets for Australia", Australian Meteorological and Oceanographic Journal, 58(4), pp.233-248; accessible from: [ http://www.bom.gov.au/amm/docs/2009/jones_hres.pdf ] or [ http://www.bom.gov.au/amm/papers.php?year=2009 ].
DOI: 10.5281/zenodo.10478661
title: Supporting data for "Temperature dependence of H2O solubility in Al-free stishovite"

description: These are FTIR and XRD data for "Temperature dependence of H2O solubility in Al-free stishovite" .
DOI: 10.5281/zenodo.13147330
title: CO2 emissions estimate from Mexico City using ground and space-based remote sensing

description: This dataset comprises inversion results for Mexico City using seven FTIR and OCO-3 observations.
DOI: 10.5281/zenodo.10025072
title: MITgcm model setup and output for "Submesoscale variability and basal melting in ice shelf cavities of the Amundsen Sea"

description: Here, it contains the results of the high-res eastern AMS simulation. A detailed description of the model configuration and model output is provided by Nakayama et al.,2019.
Nakayama, Yoshihiro, Georgy Manucharyan, Hong Zhang, Pierre Dutrieux, Hector S. Torres, Patrice Klein, Helene Seroussi, Michael Schodlok, Eric Rignot, and Dimitris Menemenlis. "Pathways of ocean heat towards Pine Island and Thwaites grounding lines." Scientific reports 9, no. 1 (2019): 16649.
Due to space limitations, please access NASA data for all other model daily outputs (Registration is required).  https://ecco.jpl.nasa.gov/drive/files/ECCO2/High_res_PIG/AMS_200m. 
Contents can be downloaded easily using wget (see link below).https://ecco-group.org/docs/wget_download_multiple_files_and_directories.pdf
(Contents)code.zip (code to run this simulation)input_ctrl.zip (input file required for this simulation input_nomelt.zip (input file required for this simulation results_ctrl.zip (days 30 and 60))results_nomelt.zip (days 30 and 60))Caution: You need to download heavier input files to rerun this simulation from ECCO-Drive. (How to build and run)mkdir build./../../tools/genmake2 -of ../../../tools/build_options/linux_amd64_ifort+mpi_ice_nas -mpi -mods ../code/make dependmake -j 16cd ..mkdir testcd testln -sf ../input/* .ln -sf /nobackup/hzhang1/forcing/era_xx_it33/ .cp ../build/mitgcm_uv .qsub run8_sandy_tracer_init_cont_2.pbs
DOI: 10.5281/zenodo.11202232
title: Dataset for 'Aluminum and iron effects on the electrical conductivity of the dense hydrous magnesium silicate phase E'

description: This dataset include the raw data of impedance spectra of the 5 samples reported in 'Aluminum and iron effects on the electrical conductivity of the dense hydrous magnesium silicate phase E'. Reading the raw data may need the software 'CView' (http://www.scribner.com).

The mossbauer spectra of two samples are also included.
DOI: 10.22008/fk2/jmb3nq
title: daily CARRA data at Zackenberg 1991 to 2021

description: daily CARRA time series data at points Here are CARRA daily 2m air temperature (t2m) or total precipitation (tp) or rainfall (rf) at GEUS AWS sites 1991 to 2021 31 years. The data are in comma separated files (.csv) for static point locations in Greenland. The data for each location is the monthly or annual average (or total, for precipitation) of daily nearest-neighbor on the 2.5 km CARRA grid point. The original source is the Copernicus Climate Change Service (C3S) Climate Data Store (CDS) produced by C3S. The data produced by contractors under C3S (ECMWF) belongs to C3S although they are public and free to use.
DOI: 10.6084/m9.figshare.27159384
title: Supplementary Material for: Ophthalmomyiasis Externa: A Case Report in a Tertiary Care Center in Riyadh, Saudi Arabia

description: Introduction: Ophthalmomyiasis externa, which is caused by Oestrus ovis larvae, is a parasitic eye infestation that is prevalent in tropical and subtropical regions. It occurs in rural settings and is associated with risk factors, such as poor sanitation and underlying health conditions. Reports on this disease in Saudi Arabia are rare.
Case Presentation: A 30-year-old man from a rural area in Riyadh presented with severe left eye irritation and redness after being hit by an insect. Examination revealed seven motile larvae, which were identified as O. ovis, on the conjunctiva. The larvae were mechanically removed, and the patient was treated with topical antibiotics. On follow-up, four additional larvae were found and removed. Symptoms resolved completely, with no further larvae detected on subsequent follow-up.
Discussion: Ophthalmomyiasis can be classified as externa, interna anterior, or interna posterior. Prompt diagnosis and treatment are crucial to prevent complications. Mechanical removal of larvae and topical antibiotics are effective treatments.
Conclusions: Thorough history and examination are essential for the diagnosis of ophthalmomyiasis, especially in rural areas. Early detection and intervention are vital to prevent serious complications. This case highlighted the importance of awareness among healthcare providers.
DOI: 10.24381/cds.553b7518
title: Thermal comfort indices derived from ERA5 reanalysis
DOI: 10.25710/3kq5-rd94
title: Fluorescent lifetimes of oils and oil distillates in artificial seawater
DOI: 10.5281/zenodo.8144205
title: Datasets for "Levelling foods for priority micronutrient value can provide more meaningful environmental footprint comparisons"

description: Supplementary Data Tables for the article "Levelling foods for priority micronutrient value can provide more meaningful environmental footprint comparison".
DOI: 10.17027/isric-wdcsoils.20180002
title: SOTER data model v1.0

description: Provides a link to the landing page for the ´SOTER data model v1.0´. This is an empty MsAccess (R) database that may be used to compile a Soil and Terrain Database (SOTER) for a specific country or region. A SOTER database is composed of a map (in GIS polygon format) that delineates the SOTER map units and a set of tables in a relational database with terrain and soil data. The information in the table can be linked to the units of the map.  
http://www.isric.org/projects/soil-and-terrain-soter-database-programme
DOI: 10.17189/1522522
title: MGN V RDRS 5 GLOBAL DATA RECORD TOPOGRAPHIC V1.0
DOI: 10.17189/1522523
title: MGN V RDRS DERIVED MOSAIC IMAGE DATA RECORD FULL RES V1.0
DOI: 10.17632/75jfzygrzm.1
title: Content Optimization for Better SERP Results: The Contribution of Conversational Maxims and Readability Enhancement

description: The main purpose of our study is to provide an in-depth understanding of the high-quality content concept from a linguistic perspective and improve the efficiency of content creation and optimization for better rankings, drawing from a Gricean perspective. The principal results of the study, based on the findings of the experiment, demonstrate the contribution of the conversational maxims of Cooperative Principle (CP) in content optimization for better SERP results. The findings also indicate the effect of the manner maxim in enhancing the readibility level of texts. In line with the aim of the study, the study tests the following hypotheses:
• Hypothesis 1.1: The conversational maxims of CP contribute to the creation of high-quality content, resulting in improved SERP results.
• Hypothesis 1.2: The application of the maxim of manner in content optimization contributes to enhancing the readability level of content.
To explore the impact of CP on user-oriented content creation, this study employed an experimental approach using a quantitative research method. The research sample comprised 10 published pieces of content, each representing keywords with low rankings in SERP. Employing an experimental approach as the quantitative research method, the study encompassed four distinct stages: pre-test, implementation, follow-up, and analysis. In the pre-test stage, the SERP rankings of the keywords respresenting 10 contents and the readability levels of these contents were evaluated. Subsequently, during the implementation stage, the contents underwent optimization based on the framework of Gricean maxims, specifically addressing the principles of quality, quantity, relevance, and manner. The provided data consists of 10 keywords, each of which is associated with 10 website contents. The data includes 10 original contents that were obtained from the website prior to the implementation process as well as the edited contents that were created during the implementation process.
DOI: 10.17632/vgzm99z3sy.2
title: Systematics of Anaphalis of Taiwan I: Resurrection of A. nagsawae (Compositae: Gnaphalieae)

description: Chloroplast genome of Anaphalis species of Taiwan
DOI: 10.18154/rwth-2020-11307
title: A High-Resolution Head-Related Transfer Function Data Set and 3D-Scan of KEMAR

description: The KEMAR Head and Torso Simulator is one of the most commonly used artificial head and torso measurement systems and its head-related transfer function (HRTF) is often used in 3D-Audio applications. As part of this publication, an HRTF measurement performed in an hemi-anechoic chamber as well as a high resolution 3D-Model of the same is provided. This accompanying report details the data acquisition and post-processing steps, that resulted in the provided data sets including a discussion of the shortcomings of the available measurement setup.
DOI: 10.23729/f57c69e0-be16-4324-a666-79ec26a033ab
title: 2023_Vahid_PRE

description: This data set contains the simulation input files, scripts, and figures data belonging to the publication

Hossein Vahid, Alberto Scacchi, Maria Sammalkorpi, and Tapio Ala-Nissila. Nonmonotonic electrophoretic mobility of rodlike polyelectrolytes by multivalent coions in added salt, Physical Review E (2023). 

Please cite the above publication when using this data set!

This work was supported by the Academy of Finland through its Centres of Excellence Programme (2022-2029, LIBER) under Project no. 346111 (M.S.) and Academy of Finland project No. 353298 (T.A-N.). The work was also supported by Technology Industries of Finland Centennial Foundation TT2020 grant (T.A-N.). We are grateful for the support by FinnCERES Materials Bioeconomy Ecosystem. Computational resources by CSC IT Centre for Finland and RAMI–RawMatters Finland Infrastructure are also gratefully acknowledged.
DOI: 10.26179/qh66-7p96
title: Nilas Software - mapping tool for displaying multiple layers of physical and biogeochemical variables in the Southern Ocean