cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6876389.v1
title: Dataset for: Sex-specific responses in neuroanatomy of hatchling American kestrels in response to embryonic exposure to the flame retardants bis(2-ethylhexyl)-2,3,4,5-tetrabromophthalate or 2-ethylhexyl-2,3,4,5-tetrabromobenzoate

description: Bis (2-ethylhexyl)-2,3,4,5-tetrabromophthalate (BEH-TEBP) and 2-ethylhexyl-2,3,4,5-tetrabromobenzoate (EH-TBB), flame retardant (FR) components of FireMaster 550® and 600®, have been detected in tissues of wild birds. To address the paucity of information regarding potential impacts of FRs on the brain, brain volume regions of hatchling American kestrels (Falco sparverius) were evaluated following in ovo injection at embryonic day (ED) 5 with safflower oil or to one of three doses of either BEH-TEBP (13, 64 or 116 µg/g egg) or EH-TBB (12, 60, or 149 µg/g egg). The low dose of both chemicals reflected concentrations reported in wild birds. The volumes of the hippocampus and telencephalon, and volumetric differences between left and right hemispheres, were measured in hatchlings (ED28). A sex-specific effect of BEH-TEBP on relative hippocampus volume was evident: the hippocampus was significantly enlarged in high dose females compared to control females, but smaller in low dose females than the other females. There was no significant effect of EH-TBB on hippocampus volume in female kestrel hatchlings, or of either chemical in male hatchlings, and no effects of these concentrations of EH-TBB or BEH-TEBP on telencephalon volume or the level of symmetry between the hemispheres of the brain. In sum, embryonic exposure of female kestrels to these BEH-TEBP concentrations altered hippocampus volume, having potential to affect spatial memory relating to ecologically-relevant behavior such as prey capture, predator avoidance, and migration.
DOI: 10.6084/m9.figshare.6876386
title: Elude - Models

description: trained elude models
DOI: 10.6084/m9.figshare.6876374
title: Dataset for: UNDERSTANDING THE CAPTIVITY EFFECT ON INVERTEBRATE COMMUNITIES TRANSPLANTED INTO AN EXPERIMENTAL STREAM LABORATORY

description: Little is known about how design and testing methodologies affect the macroinvertebrate communities that are held captive in mesocosms. To address this gap, we conducted a 32-day test to determine how seeded invertebrate communities changed once removed from the natural stream and introduced to the laboratory. We evaluated larvae survival and adult emergence in controls from 4 subsequent experiments, as well as corresponding within-river community changes. The experimental streams maintained about 80% of the invertebrates that originally colonized the introduced substrates. Many macroinvertebrate populations experienced changes in numbers through time suggesting that these taxa are unlikely to maintain static populations throughout experiments. For example, some taxa (Tanytarsini, Simuliidae, Cinygmula sp.) increased in number, grew (Simuliidae), and possibly recruited new individuals (Baetidae) as larvae while several also completed other life history events (pupation and emergence) during the 30 to 32-day experiments. Midges and mayflies dominated emergence, further supporting the idea that conditions are conducive for many taxa to complete their life-cycles while held captive in the experimental streams. However, plecopterans were sensitive to temperature changes greater than 2°C between river and lab. Thus, this experimental stream testing approach can support diverse larval macroinvertebrate communities for durations consistent with some chronic criterion development and life cycle assessments (i.e., 30 days). The changes in communities held captive in the experimental streams were mostly consistent with the parallel changes observed in in-situ river samples, indicating that mesocosm results are reasonably representative of real river insect communities.
DOI: 10.6084/m9.figshare.6876374.v1
title: Dataset for: UNDERSTANDING THE CAPTIVITY EFFECT ON INVERTEBRATE COMMUNITIES TRANSPLANTED INTO AN EXPERIMENTAL STREAM LABORATORY

description: Little is known about how design and testing methodologies affect the macroinvertebrate communities that are held captive in mesocosms. To address this gap, we conducted a 32-day test to determine how seeded invertebrate communities changed once removed from the natural stream and introduced to the laboratory. We evaluated larvae survival and adult emergence in controls from 4 subsequent experiments, as well as corresponding within-river community changes. The experimental streams maintained about 80% of the invertebrates that originally colonized the introduced substrates. Many macroinvertebrate populations experienced changes in numbers through time suggesting that these taxa are unlikely to maintain static populations throughout experiments. For example, some taxa (Tanytarsini, Simuliidae, Cinygmula sp.) increased in number, grew (Simuliidae), and possibly recruited new individuals (Baetidae) as larvae while several also completed other life history events (pupation and emergence) during the 30 to 32-day experiments. Midges and mayflies dominated emergence, further supporting the idea that conditions are conducive for many taxa to complete their life-cycles while held captive in the experimental streams. However, plecopterans were sensitive to temperature changes greater than 2°C between river and lab. Thus, this experimental stream testing approach can support diverse larval macroinvertebrate communities for durations consistent with some chronic criterion development and life cycle assessments (i.e., 30 days). The changes in communities held captive in the experimental streams were mostly consistent with the parallel changes observed in in-situ river samples, indicating that mesocosm results are reasonably representative of real river insect communities.
DOI: 10.6084/m9.figshare.6876302
title: A systematic review of levetiracetam versus phenytoin in the prevention of late post-traumatic seizures and survey of UK neurosurgical prescribing practice of antiepileptic medication in acute traumatic brain injury

description: <b>Background:</b> Guidelines recommend 1 week of prophylactic phenytoin for post-traumatic seizures (PTS). Levetiracetam is gaining popularity as an alternative with a superior side-effect profile and may be suitable for extended use. We performed a systematic review comparing the efficacy of levetiracetam and phenytoin in reducing the incidence of late PTS. The secondary objectives were to compare their effects on the Extended Glasgow Outcome Scale (GOS-E) and length of stay. We also aimed to survey current prophylaxis prescribing practices. <b>Methods:</b> A systematic review was performed using Medline, Pubmed, Embase and Cochrane. Trials and observational studies comparing the efficacy of phenytoin and levetiracetam in the prevention of late PTS were included. A survey assessing prescribing practices was e-mailed to all consultant members of the Society of British Neurological Surgeons (<i>n</i> = 249) in March 2013. <b>Results:</b> One randomised controlled trial (RCT) (52 patients) and a cohort study (19 patients) met our criteria. Neither found a significant difference in the incidence of late PTS or length of hospital stay, although the RCT showed an improvement in the GOS-E with levetiracetam. Of the 249 consultants included in the survey, 55 responded (22.1%). Prophylaxis was prescribed by 32 consultants (58%), of whom 21 (65.6%) chose phenytoin, 7 (21.9%) chose levetiracetam, 3 (9.4%) chose valproate and 1 (3%) chose ‘other’. Half indicated they would prescribe prophylaxis for 1 week, the remainder opting for extended use. <b>Conclusion:</b> While our review found no evidence of a difference in late seizure incidence, there is evidence of improved long-term outcomes with levetiracetam. Neither study used an extended course of levetiracetam or continuous electroencephalography. Further research which accounts for these factors is required for the development of guidelines which take levetiracetam into account. Our survey showed a lack of awareness of the potential harms of extended phenytoin use and a move towards levetiracetam.
DOI: 10.6084/m9.figshare.6876302.v1
title: A systematic review of levetiracetam versus phenytoin in the prevention of late post-traumatic seizures and survey of UK neurosurgical prescribing practice of antiepileptic medication in acute traumatic brain injury

description: <b>Background:</b> Guidelines recommend 1 week of prophylactic phenytoin for post-traumatic seizures (PTS). Levetiracetam is gaining popularity as an alternative with a superior side-effect profile and may be suitable for extended use. We performed a systematic review comparing the efficacy of levetiracetam and phenytoin in reducing the incidence of late PTS. The secondary objectives were to compare their effects on the Extended Glasgow Outcome Scale (GOS-E) and length of stay. We also aimed to survey current prophylaxis prescribing practices. <b>Methods:</b> A systematic review was performed using Medline, Pubmed, Embase and Cochrane. Trials and observational studies comparing the efficacy of phenytoin and levetiracetam in the prevention of late PTS were included. A survey assessing prescribing practices was e-mailed to all consultant members of the Society of British Neurological Surgeons (<i>n</i> = 249) in March 2013. <b>Results:</b> One randomised controlled trial (RCT) (52 patients) and a cohort study (19 patients) met our criteria. Neither found a significant difference in the incidence of late PTS or length of hospital stay, although the RCT showed an improvement in the GOS-E with levetiracetam. Of the 249 consultants included in the survey, 55 responded (22.1%). Prophylaxis was prescribed by 32 consultants (58%), of whom 21 (65.6%) chose phenytoin, 7 (21.9%) chose levetiracetam, 3 (9.4%) chose valproate and 1 (3%) chose ‘other’. Half indicated they would prescribe prophylaxis for 1 week, the remainder opting for extended use. <b>Conclusion:</b> While our review found no evidence of a difference in late seizure incidence, there is evidence of improved long-term outcomes with levetiracetam. Neither study used an extended course of levetiracetam or continuous electroencephalography. Further research which accounts for these factors is required for the development of guidelines which take levetiracetam into account. Our survey showed a lack of awareness of the potential harms of extended phenytoin use and a move towards levetiracetam.
DOI: 10.6084/m9.figshare.6876221
title: OntoMirror: A New Ontology Visualization Tool with a Metric Calculator and a Pitfall Scanner

description: An ontology provides formal, machine readable and human interpretable repre- sentations of a domain knowledge. Therefore, ontology based knowledge man- agement has received a lot of attention with the rise of the Semantic Web. People who want to use these ontologies need an understanding, but it is very difficult if the ontology reader lacks background knowledge necessary to comprehend the ontology or the size of the ontology is very huge. It was within this context that the need arose for software tools that facilitate the understanding of ontologies. Ontology visualization is an important research area because visualization can help in development, exploration, verification, and comprehension of ontologies. This paper introduces the design of a new ontology visualization tool, which differs from the traditional visualization tools in the manner that it gives some important metrics and analytics about the ontology concepts and warns the ontology developer about potential ontology design errors. The tool has also some advantages in terms of speed and readability. It is clearly visible that these additional functionalities will increase the value added by the traditional ontology visualization tools during the ontology exploration and evaluation.
DOI: 10.6084/m9.figshare.6876221.v2
title: OntoMirror: A New Ontology Visualization Tool with a Metric Calculator and a Pitfall Scanner

description: An ontology provides formal, machine readable and human interpretable repre- sentations of a domain knowledge. Therefore, ontology based knowledge man- agement has received a lot of attention with the rise of the Semantic Web. People who want to use these ontologies need an understanding, but it is very difficult if the ontology reader lacks background knowledge necessary to comprehend the ontology or the size of the ontology is very huge. It was within this context that the need arose for software tools that facilitate the understanding of ontologies. Ontology visualization is an important research area because visualization can help in development, exploration, verification, and comprehension of ontologies. This paper introduces the design of a new ontology visualization tool, which differs from the traditional visualization tools in the manner that it gives some important metrics and analytics about the ontology concepts and warns the ontology developer about potential ontology design errors. The tool has also some advantages in terms of speed and readability. It is clearly visible that these additional functionalities will increase the value added by the traditional ontology visualization tools during the ontology exploration and evaluation.
DOI: 10.6084/m9.figshare.6875675
title: Supplemental File 2: Barcode Index Number (BINs) Report

description: Report of Barcode Index Number (BIN) for 101 COI sequences from BOLD, including 64 unique BINs and 4 non-unique BINs.
DOI: 10.6084/m9.figshare.6875675.v1
title: Supplemental File 2: Barcode Index Number (BINs) Report

description: Report of Barcode Index Number (BIN) for 101 COI sequences from BOLD, including 64 unique BINs and 4 non-unique BINs.
DOI: 10.6084/m9.figshare.6875660
title: Tingkat Pengetahuan mahasiswa Sastra Jepang Unand dalam mengenal bentuk Negasi dalam bahasa Jepang dilihat dari segi Literasi Budaya sekarang

description: Makalah ini merupakan penelitian eksperimental dengan satu sampel (eksperimen) yang berjudul “Tinngkat pengetahuan mahasiswa sastra Jepang Unand dalam mengenal bentuk afiks tanda negasi bahasa jepang dilihat dari segi budaya literasi sekarang. Sampel dilakukan dengan 20 orang mahasiswa program studi Bahasa Jepang tahun akademik 2014<br>
DOI: 10.6084/m9.figshare.6875660.v1
title: Tingkat Pengetahuan mahasiswa Sastra Jepang Unand dalam mengenal bentuk Negasi dalam bahasa Jepang dilihat dari segi Literasi Budaya sekarang

description: Makalah ini merupakan penelitian eksperimental dengan satu sampel (eksperimen) yang berjudul “Tinngkat pengetahuan mahasiswa sastra Jepang Unand dalam mengenal bentuk afiks tanda negasi bahasa jepang dilihat dari segi budaya literasi sekarang. Sampel dilakukan dengan 20 orang mahasiswa program studi Bahasa Jepang tahun akademik 2014<br>
DOI: 10.6084/m9.figshare.6875621
title: Additional file 1: of The genomic impact of historical hybridization with massive mitochondrial DNA introgression

description: Table S1. Basic information of specimens sequenced in this study. Table S2. ELAI’s Power for inferring introgression according to our simulations of artificial introgression. Table S3. Demographic inferences from IBS tracts. Table S4. List of nuclear genes overlapping regions with outlier introgression frequencies. Table S5. Gene Ontology functional enrichment analyses of genes overlapping regions with outlier frequencies of introgression. Table S6. Summary of GO functional categories significantly enriched in the set of genes with outlier introgression frequencies. Table S7. Nonsynonymous mutations detected within 123 high frequency introgression genes and their potential functional impact inferred using SIFT. Table S8. List of mitonuc genes with outlier frequencies of introgression. Table S9. List of mitonuc genes with geographic patterns similar to that of mtDNA. Table S10. Nonsynonymous mutations detected within mitonuc gene candidates to have co-introgressed with mitochondrial. Table S11. Classification of chromosomes according to centromere position. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.6875621.v1
title: Additional file 1: of The genomic impact of historical hybridization with massive mitochondrial DNA introgression

description: Table S1. Basic information of specimens sequenced in this study. Table S2. ELAI’s Power for inferring introgression according to our simulations of artificial introgression. Table S3. Demographic inferences from IBS tracts. Table S4. List of nuclear genes overlapping regions with outlier introgression frequencies. Table S5. Gene Ontology functional enrichment analyses of genes overlapping regions with outlier frequencies of introgression. Table S6. Summary of GO functional categories significantly enriched in the set of genes with outlier introgression frequencies. Table S7. Nonsynonymous mutations detected within 123 high frequency introgression genes and their potential functional impact inferred using SIFT. Table S8. List of mitonuc genes with outlier frequencies of introgression. Table S9. List of mitonuc genes with geographic patterns similar to that of mtDNA. Table S10. Nonsynonymous mutations detected within mitonuc gene candidates to have co-introgressed with mitochondrial. Table S11. Classification of chromosomes according to centromere position. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.6875609
title: Dataset for: Inhibition of calpain delays early muscle atrophy after rotator cuff tendon release in sheep

description: Chronic rotator cuff (RC) tears are characterised by retraction, fat accumulation, and atrophy of the affected muscle. These features pose an intractable problem for surgical repair and subsequent recovery, and their prevention may be easier than reversal. Using an established ovine model, we tested the hypothesis that inhibition of the protease calpain mitigates <i>m. infraspinatus</i> atrophy by preservation of the myofibres’ structural anchors in the sarcolemma (the costameres). Already 2 weeks of distal tendon release led to a reduction in muscle volume (-11.6 ± 9.1 cm<sup>3</sup>, p = 0.038) and an 8.3% shift from slow to fast fibre area (p = 0.046), which were both entirely abolished by chronic local administration of the calpain inhibitor calpeptin alone, and in combination with sildenafil. Calpain inhibition blunted the retraction of the muscle-tendon unit by 0.8-1.0 cm (p = 0.020) compared with the control group, and prevented cleavage of the costameric protein talin. Calpain 1 and 2 protein levels increased in the medicated groups after 4 weeks counteracting the efficacy of calpeptin. Hence atrophic changes emerged after 4 weeks despite ongoing treatment. These findings suggest that the early muscular adaptations in the specific case of RC tear in the ovine model are indistinguishable from the atrophy and slow-to-fast fibre transformation observed with conventional unloading and can be prevented for 2 weeks. Concluding, calpain is a potential target to extend the temporal window for reconstruction of the ruptured RC tendon before recovery turns impossible.
DOI: 10.6084/m9.figshare.6875609.v1
title: Dataset for: Inhibition of calpain delays early muscle atrophy after rotator cuff tendon release in sheep

description: Chronic rotator cuff (RC) tears are characterised by retraction, fat accumulation, and atrophy of the affected muscle. These features pose an intractable problem for surgical repair and subsequent recovery, and their prevention may be easier than reversal. Using an established ovine model, we tested the hypothesis that inhibition of the protease calpain mitigates <i>m. infraspinatus</i> atrophy by preservation of the myofibres’ structural anchors in the sarcolemma (the costameres). Already 2 weeks of distal tendon release led to a reduction in muscle volume (-11.6 ± 9.1 cm<sup>3</sup>, p = 0.038) and an 8.3% shift from slow to fast fibre area (p = 0.046), which were both entirely abolished by chronic local administration of the calpain inhibitor calpeptin alone, and in combination with sildenafil. Calpain inhibition blunted the retraction of the muscle-tendon unit by 0.8-1.0 cm (p = 0.020) compared with the control group, and prevented cleavage of the costameric protein talin. Calpain 1 and 2 protein levels increased in the medicated groups after 4 weeks counteracting the efficacy of calpeptin. Hence atrophic changes emerged after 4 weeks despite ongoing treatment. These findings suggest that the early muscular adaptations in the specific case of RC tear in the ovine model are indistinguishable from the atrophy and slow-to-fast fibre transformation observed with conventional unloading and can be prevented for 2 weeks. Concluding, calpain is a potential target to extend the temporal window for reconstruction of the ruptured RC tendon before recovery turns impossible.
DOI: 10.6084/m9.figshare.6875591
title: AOD_monthly_2000-MAR_2017-FEB_from_MISR_L3_JOINT.nc

description: The monthly mean AOD for total aerosols (hereafter referred to as total AOD), non-absorbing aerosols (non-absorbing AOD), absorbing aerosols (absorbing AOD), and non-spherical aerosols (non-spherical AOD) for the wavelength of 558 $nm$ over the 17-year period from March 2000 through February 2017. The monthly mean AODS were calculated using the Multi-angle Imaging SpectroRadiometer (MISR)'s Level 3 Joint Aerosol Product.
DOI: 10.6084/m9.figshare.6875534
title: Data.xlsx

description: Use of gamification strategy in Accounting Education in Brazil to improve students' skills. Dataset in Portuguese.
DOI: 10.6084/m9.figshare.6875540
title: Fake science: The impact of pseudo-psychological demonstrations on people’s beliefs in psychological principles - Data Set

description: Data set for "Fake science: The impact of pseudo-psychological demonstrations on people’s beliefs in implausible psychological principles"
DOI: 10.6084/m9.figshare.6875525
title: TESS Perigee Times

description: Perigee passage times for the Transiting Exoplanet Survey Satellite (TESS). This was calculated by using the JPL Horizons website (https://ssd.jpl.nasa.gov/horizons.cgi), with the target body as TESS(spacecraft) [-95] and the observer as Geocentric [500]. The times given are the minimum orbital distance from Earth and are good to 15 minutes. <br>The emphemeris is from June 16, 2019.<br><br>
DOI: 10.6084/m9.figshare.6875540.v1
title: Fake science: The impact of pseudo-psychological demonstrations on people’s beliefs in implausible psychological principles - Data Set

description: Data set for "Fake science: The impact of pseudo-psychological demonstrations on people’s beliefs in implausible psychological principles"
DOI: 10.6084/m9.figshare.6875540.v2
title: Fake science: The impact of pseudo-psychological demonstrations on people’s beliefs in psychological principles - Data Set

description: Data set for "Fake science: The impact of pseudo-psychological demonstrations on people’s beliefs in implausible psychological principles"