cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.jce7cx
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Cyprideis torosa (Jones, 1850)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 62 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077992-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5h9zf3
title: Occurrence Download

description: A dataset containing 7571512 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fagaceae"
 ]
}

 The dataset includes 7571512 records from 5592 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077987-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7302/xhb4-j609
title: Electrocorticographic (ECoG) dataset of an audiovisual task

description: Data were acquired from 21 patients with intractable epilepsy undergoing clinical evaluation using iEEG. Patients ranged in age from 15-58 years (mean = 37.1, SD = 12.8) and included 10 females. Across all patients, data was recorded from a total of 1367 electrodes. Each participant were presented with multiple trials of auditory only and congruent audio-visual stimuli. On each trial a single phoneme was presented to the participant. Three variants of the tasks were used with each variant consisting of a different set of phonemes (variant A: /ba/ /da/ /ta/ /tha/, variant B: /ba/ /da/ /ga/, variant C: /ba/ /ga/ /ka/ /pa/). Trials were presented in a random order and phonemes were distributed uniformly across conditions. While conditions were matched in terms of trial numbers, participants completed a variable number of trials (based on task variant and the number of blocks completed). All provided data has been resampled to 1024 Hz during initial stages of processing for all participants. Data has been referenced in a bipolar fashion (signals subtracted from each immediately adjacent electrode in a pairwise manner) to ensure that the observed signals were derived from maximally local neuronal populations. The preprocessing steps followed have been described in the detailed description document in the attached materials. ;The dataset zip folder consists of three main sub-folders: 

1) Electrodes: This folder provides details regarding the individual electrodes for each subject, their MNI coordinates as well as their MNI vertices information according to freesurfer parcellations. This folder also consists of images of the physical location of each of the electrode sets. 

2) Processed: This folder contains preprocessed data in all three frequencies (theta, beta and high gamma power) for individual subjects and the corresponding vertex locations for each of the electrodes from which their data was recorded. The images subfolder also contains figures provided in the main manuscript. 

3) MatlabCodes: This folder contains all the matlab scripts required to reproduce the results provided in the main manuscript.  LME_AvsAV_Main_Windows.m is the main file that an user has to run to reproduce the results. 
description: A de-identified electrocorticographic (ECoG) dataset obtained from 21 subjects performing an audiovisual task was collected from 4 hospitals. The data is preprocessed according to the descriptions provided in the readme file. The data is provided in three distinct frequency bands
description: Theta (3-7Hz), Beta (13-30Hz) and high gamma power (70-150Hz). The task consisted of phonemes/visemes in auditory alone and congruent audio-visual stimuli. Only data from electrodes in the superiortemporal, middletemporal and supramarginal regions have been included in the dataset.  Electrode locations and their corresponding MNI vertices labelled according to freesurfer annotations at different resolutions (1mm, 2mm, 4mm, 10mm and 20mm) are included. Matlab codes to replicate the results in the accompanying manuscript are also included.
DOI: 10.7302/nr5h-7w44
title: The impact of corporate payments on robotic surgery research

description: While collaboration with industry is paramount to innovation, the recent emphasis on industrial relationship transparency has sparked new guidelines, research studies, and standardizations focused on re-defining conflict of interest. There is limited data on defining the specific financial amount wherein a conflict of interest is relevant. This study is the first to assess the potential financial effects on high-quality clinical data, or the “indirect sponsorship”. 
description: A broad literature search was run in three Ovid Medline databases. Duplicate citations were removed in Endnote X6 (Clarivate Analytics). The remaining citations (n=714) were imported into DistillerSR (Evidence Partners, Inc.) for study selection. Selection involved a title and abstract screen, which was followed by two rounds of full-text review. Data was extracted from the final set of included studies (n=33).
DOI: 10.7302/jh82-fh69
title: BigAnt v6 robot motion tracking data - processed dataset

description: These data were produced in an attempt to characterize the turning and steering behaviors of 1-DoF multi-legged (hexpedal in this case) robots. Such turning behaviors require sliding contact points. 
All the data is provided in a single, large .csv.gz file (416256 rows); additional details and example code in the README
description: This dataset is derived from the raw dataset found at doi:10.7302/024q-kk06 using the global phase estimation based on the Phaser algorithm doi: 10.1103/PhysRevE.78.051907 and additional processing.
DOI: 10.7302/4bwy-gk27
title: Najamba-Kindige-speaking (Dogon, Mali) village photos

description: images of villages in Mali in which Najamba Kindige (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
description: photography
DOI: 10.7302/z2g44nj2
title: Geographic distributions, phenotypes, and phylogenetic relationships of Phalloceros (Cyprinodontiformes: Poeciliidae): insights about diversification among sympatric species pools [DATA SET]

description: Estimated phylogenetic relationships based on more than 18,000 loci in 93 individuals (full data) or 21 individuals (subset data) representing 19 described species and two putative undescribed species. Nine files are part of this dataset, including all input files to infer the phylogenetic reconstructions and the outputs obtained, in addition to a pruned tree used to infer the ancestral state reconstructions.
description: Inputs were obtained with a ddRAD library processed with the software ipyrad.
 Evolutionary relationships were estimated under two approaches. A maximum likelihood (ML) estimate was obtained from RAxML v. 8.2.8 (Stamatakis, 2014) and coalescent-based approach was also used to estimate phylogenetic relationships using the program SVDquartets (Chifman and Kubatko, 2014) as implemented in PAUP* 4.0 (Swofford, 2003). Two phylogenetic trees were estimated with SVDquartets: one for the phylogenetic relationships estimated among individuals, and another for species lineages. Support was assessed with 1,000 bootstrap replicates in all reconstructions. 
To infer the position of the root in Phalloceros, we extracted the SNPs from the aligned reference genome and reconstructed the phylogenetic relationships among individuals using unlinked SNPs with SVDquartets setting Xiphophorus maculatus as outgroup.
Maximum likelihood ancestral state reconstructions were performed in the package ape in R with the pruned RAxML tree.

*For further information consult the manuscript.
DOI: 10.7302/m1ag-tt36
title: Bunoge-speaking (Dogon, Mali) village photos

description: Images of villages in Mali in which Bunoge (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
description: Photography
DOI: 10.7302/4ga6-8574
title: Characterizing Multi-Subevent Earthquakes Using the Brune Source Model

description: The Brune source model is widely used in studies of complex earthquakes with multiple episodes of high moment release (i.e., multiple subevents). In this study, we investigate how corner frequency estimates of earthquakes with multiple subevents are biased if they are based on the Brune source model. By assuming complex sources as a sum of multiple Brune sources, we analyze 1,640 source time functions (STFs) of Mw 5.5-8.0 earthquakes in the SCARDEC catalog to estimate the corner frequencies, onset times, and seismic moments of subevents. We identify more subevents for strike-slip earthquakes than dip-slip earthquakes, and the number of resolvable subevents increases with magnitude. We find that earthquake corner frequency correlates best with the corner frequency of the subevent with the highest moment release (i.e., the largest subevent). This suggests that, when the Brune model is used, the estimated corner frequency and therefore the stress drop of a complex earthquake is determined primarily by the largest subevent rather than the total rupture area. ;Our results imply that the stress variation of asperities, rather than the average stress change of the whole fault, contributes to the large variance of stress drop estimates.
description: The original source time functions are from the SCARDEC catalog, which is available through http://scardec.projects.sismo.ipgp.fr/. Analysis to the source time function data is done through Python 3.
DOI: 10.7302/vrs8-fn28
title: Developing Writers Interview Transcripts

description: The interviews included in this folder were conducted as part of a longitudinal study in writing development published in Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). Interviews were conducted upon students' entry into the study (files labelled "entry") and exit from the study (files labelled "exit"). To learn more about this study, please see the epublication  https://doi.org/10.3998/mpub.10079890 and the website https://www.developingwritersbook.org/pages/about/about-the-study/.
description: This link will download a zipped folder of PDF files. Each file contains the anonymized transcript of one entry or exit interview from a participant in the study. Any names present in the file or file name are pseudonyms assigned to the participant. The file name identifies the participant's study number and/or pseudonym and whether the transcript is an entry or exit interview. The files can be exported to .txt format for corpus analysis using the File > Save as Text function in Adobe Acrobat. Individual files can be downloaded through the Resources tab on the monograph's Fulcrum website (https://www.fulcrum.org/concern/monographs/ww72bc25j), and sets of files associated with particular study participants can be located using the tags in this interface.
DOI: 10.7302/e3n8-wa61
title: Dataset for thesis "Development and Experimental Validation of Dynamic Bayesian Networks for System Reliability Prediction"

description: This Ph.D. research focuses on two subject areas: experimental and numerical
model, which serves as two essential parts of a digital twin. A digital twin contains
models of real-world structures and fuses data from observations of the structures
and scale experiment to pull the models into better agreement with the real world.
Digital twin models have the promise of representing complex marine structures and
providing enhanced lifecycle performance and risk forecasts. Experimentally verifying
the updating approaches is necessary but rarely performed. Thus, the proposed
work is designing an experiment and developing a numerical model updated by the experimental data. 
The dataset contains all the data collected in the experiment of a four-crack hexagon-
shaped specimen is presented, designed to mimic many of the properties of complex
degrading marine structural systems, such as crack interaction, component inter-
dependence, redundant load path, and non-binary failure.
description: The data was collected from the hexagon experiments listed as follows,

(1) Crack length recorded by machinist scale and maximum reaction force from MTS testing machine

(2) Crack figures captured for computer vision method (the 2nd, 4th, and 5th hexagon experiments), including two validation tests

(3) Crack figures captured for Digital Image Correlation method (the 2nd, 4th, and 5th hexagon experiments)

(4) Strain data measured by strain gauges (the 3rd-5th hexagon experiment)

(5) Design of hexagon specimen and grip
DOI: 10.6084/m9.figshare.19536760.v2
title: Neural Effects of Sham-Controlled Alpha Auditory Entrainment in Fragile X Syndrome: Pilot Study

description: Updated with SD and T-values
DOI: 10.7302/z23f4mvc
title: Supporting data for the Near-Infrared Emitting and Reflectance-Monitoring Dome

description: This dataset contains all data used to generate the figures in The Cryosphere manuscript “Measuring Snow Specific Surface Area with 1.30 and 1.55 micro-meter Bidirectional Reflectance Factors,” by Adam Schneider, Mark Flanner, and Roger De Roo.  These data support the theory, calibration, and application of the Near-Infrared Emitting and Reflectance Monitoring Dome (NERD), an instrument engineered to rapidly retrieve surface snow specific surface area in the field.  Note that this deposit includes a microCT scan database for natural snowfall samples collected in New Hampshire during 2015-2017, comprised of raw tiff files as well as reconstructions, binarized reconstructions, and some 3D model reconstructions.;Running python scripts generally require that the following packages are installed:  NumPy, SciPy, Matplotlib, Pandas, and ipdb (for debugging).
description: Figure 1 - Spectral snow albedo data was generated from SNICAR-Online (Flanner et al., 2007)
description: Figure 3 - X-ray micro-computed tomography was done at the U.S. Army Corps of Engineers Engineer Research & Development Center’s Cold Regions Research & Engineering Lab.  Scans and analysis were conducted using Bruker microCT instrumentation and software
description: Figure 4 - Snow bidirectional reflectance factors were measured using the Near-Infrared Emitting and Reflectance Monitoring Dome.  Snow specific surface area was measured using Bruker microCT instrumentation and analysis software.  Snow bidirectional reflectance factors were modeled for varying ice particle radii and shape habit using the Monte-Carlo method for photon transport
description: Figure 5 - Snow albedo data was generated from SNICAR-Online (Flanner et al., 2007) and from Monte-Carlo modeling.
description: Figure 6 - Calibration curves were fit to data using least squares regression analysis.
description: Figure 7 - Snow bidirectional reflectance factors were measured throughout the day on February 14, 2017 and converted to snow specific surface area using an exponential calibration function.
DOI: 10.7302/7vyj-0686
title: Dogon Najamba Audio Files

description: Najamba is spoken chiefly in villages on the edges of low cliffs flanking a long valley near Douentza in central Mali. It belongs to a cluster of languages/dialects including Kindige, spoken mostly along the main Douentza-Sevare highway, and the varieties around Borko on the (very) high plateau on the northwestern edge of the Dogon (Bandiagara) plateau. These varieties are often collectively called Bondu So, but this is an exonym. A grammar of Najamba was published electronically by Language Description Heritage Library in 2017 http://ldh.clld.org/2017/02/01/escidoc2397771/ It is backed up at Deep Blue documents. http://hdl.handle.net/2027.42/139022 One cassette was recorded (on one side only) in Kubewel village in 2004. Two cassettes were recorded in Adia village in 2005 in a single long session. These have been digitized. The inventory is: Kubewel: 2004-01 side A; Adia 2005-01 side A; 2005-01 side B; 2005-02 side A; 2005-02 side B. The 2004 tape had poor sound quality and was not transcribed. A substantial part of 2005-01 side A and 2005-02 side A was transcribed and translated in unpublished keyboarded documents in 2009 (see below). The material from 2005-01 side A was further edited and appeared as a single long text at the end of the published grammar. The unpublished documents included in this work are: transcriptions: Dogon Najamba 2005_01_A Adia text transcribed 2009; Dogon Najamba 2005_02_A Adia text transcribed 2009. translations: Dogon Najamba 2005_01_A Adia text translated 2009; Dogon Najamba 2005_02_A Adia text translated 2009
description: Digitized cassette tapes
DOI: 10.7302/2r77-yv35
title: Scanning X-ray fluorescence (XRF) for MV0811-14JC

description: This dataset includes scanning X-ray fluorescence (XRF) data for the core MV0811-14JC (34.2818°N
120.0360°W, water depth: 582 m), which was collected by the research vessel R/V Melville off Southern California in 2008.11. The research is funded by NSF OCE-1304327.
description: MV0811-14JC contains 10 sections. The first 8 sections were scanned at 200-µm resolution on an ITRAX X-ray fluorescence (XRF) core scanner (Cox Analytical Instruments) at the Large Lakes Observatory, University of Minnesota, Duluth. The scanner is equipped with a Cr X-ray tube, and operated with an 8-second scan time at 30 kV and 15 mA. Section 1-3 were scanned in 2010 (data reevaluated in 2012 using the updated peak fitting algorithm), and Section 4-8 were scanned in 2014, with more elements evaluated (see the README file).
DOI: 10.7302/z2bp011n
title: Belt fit Manikin Representing a Two-Year-Old Child

description: This is the first physical anthropomorphic test device to be based both on statistical body shape models as well as 3D printing.
description: A physical manikin was developed that represents a two-year-old child sitting in a vehicle seat. The manikin was developed to assess seat belt fit, particularly in aviation seats, but also has applicability in other environments such as ground vehicles.
DOI: 10.7302/69e6-cd20
title: Spatial dependence of the growth of polycyclic aromatic compounds in an ethylene counterflow flame: experimental measurements and simulation results

description: Datasets for article in CARBON: Spatial dependence of the growth of polycyclic aromatic compounds in an ethylene counterflow flame.
The experiment VUV-AMS measurements ("VUV_AMS_C2H4_Counterflow.txt") consists aerosol mass spectra data from an atmospheric-pressure ethylene/oxygen/argon counterflow diffusion flame described in Johansson et al., Proc. Combust. Inst. 36, 799-806 (2017) doi:10.1016/j.proci.2016.07.130.;The experiment VUV-MBMS measurements ("VUV_MBMS_C2H4_Counterflow.txt") consists gas-phase data from an atmospheric-pressure ethylene/oxygen/argon counterflow diffusion flame described in Johansson et al., Proc. Combust. Inst. 36, 799-806 (2017) doi:10.1016/j.proci.2016.07.130.;2D CFD simulation results by KAUST mechanism II ("CFD_KM2_results.xlsx") consists stabilized CFD gas-phase species profiles along different x,y,z coordinates. Species are given by mole fractions.;The SNapS2 simulation results ("SNapS2_results.zip") consist streamline I (from fuel side), i (from oxidizer side), and middle (DFFO = 5.0mm) for producing results in Fig. 5, Fig. 6, and Table 1. Three folders under each streamline ("C5H6", "C6H5CH3", and "C6H6") represent simulations by using different seeds (cyclopentadiene, toluene, and benzene respectively). The text files inside each folder are a single trace (time-history) for one SNapS2 simulation. Text file name consists "starting time"+"."+"simulation number"+".txt". For example 0.041.25.txt meaning the 25th simulation starting at 0.041s. Four columns inside the text files represent time, molecular mass, reaction index, and SMILES (Simplified molecular-input line-entry system) of the molecule.;Data citation: Wang, Q., Elvati, P., Kim, D., Johansson, K.O., Schrader, P.E., Michelsen, H.A., Violi, A. (2019). Spatial dependence of the growth of polycyclic aromatic compounds in an ethylene counterflow flame: experimental measurements and simulation results  [Data set]. University of Michigan Deep Blue Data Repository. https://doi.org/10.7302/69e6-cd20
description: Details have been discussed in the article in CARBON: Spatial dependence of the growth of polycyclic aromatic compounds in an ethylene counterflow flame.
DOI: 10.7302/x094-he85
title: A 3D Physics-based Particle Model of the Venus Oxygen Corona: Variations with Solar Activity

description: Here we present an investigation of the variability of Venus' extended oxygen corona. For that, we employ a combination of a fluid model VTGCM for simulating Venus' ionosphere and thermosphere and kinetic model AMPS. We have found excellent agreement of the model results with PVO observations of the corona when the modeling is done assuming the solar maximum conditions, which corresponds to the solar conditions during the observations. We also found that the oxygen density strongly depends on the solar conditions and varies by order of magnitude over a solar cycle. That explains why the extended oxygen corona was observed only at the solar maximum. The result presented in this paper will be used in a later study of the planet's interaction with the ambient solar wind, where the corona model defines the mass loading coefficient.
description: For this results, we adapted Mars' oxygen corona application developed in the Adaptive Mesh Particle Simulator (AMPS) that used in our previous studies for the case of Venus' environment. That is possible because both Mars and Venus have similar mechanisms for producing and thermalizing energetic hot O.
DOI: 10.7302/wwya-5q86
title: Example Data for "A Low-Power Band of Neuronal Spiking Activity Dominated by Local Single Units Improves the Performance of Brain-Machine Interfaces"

description: This data is a subset of the data used to generate figures similar to figures 1, 2, 3, and 4 in Nason et al., 2020, Nature Biomedical Engineering. The purpose of the study was to demonstrate the benefits of using spiking band power, a low-power but single unit specific recording signal, for brain-machine interfaces with nonhuman primates with the potential to impact low-power brain-machine interfaces with humans. All of the data is contained in .mat files, which can be commonly opened by Matlab and the Python scipy library.
description: This dataset includes example simulated and in vivo data, some of which is synchronized with behavior. The simulated data in MultiUnitSim.mat includes one sorted unit from one nonhuman primate that is replayed spontaneously for 5 seconds to create realistic neural signals, with some signal-processed versions included. The in vivo data in MultiUnitInVivo.mat includes sorted unit spiking data as well as some signal processed versions of it. The OnlineTrainingData.mat includes behavioral, spiking, and spiking band power measurements all synchronized in time, captured from the same nonhuman primate performing a finger task. More details about the methods and the files can be found in Nason et al., 2020, Nature Biomedical Engineering and in the attached README.