cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/rgfgx9xb8w
title: FAM120A couples SREBP-dependent transcription and splicing of lipogenesis enzymes downstream of mTORC1

description: The mechanistic target of rapamycin complex 1 (mTORC1) is a master regulator of cell growth that stimulates macromolecule synthesis upon nutrient, insulin, growth factors, and oncogenic signals. mTORC1 activates anabolic pathways by inducing posttranslational modifications of metabolic enzymes and by regulating their expression through transcription and mRNA processing. However, the mechanisms of how mTORC1 orchestrates these tightly connected processes remain unclear. Here, we identify FAM120A as a transcriptional co-activator that couples transcription and splicing of de novo lipid synthesis enzymes downstream of mTORC1-SRPK2 signaling. The mTORC1-activated SRPK2 phosphorylates a splicing factor SRSF1, enhancing its binding to FAM120A. Mechanistically, FAM120A directly interacts with a lipogenic transcription factor SREBP1 at active promoters, thereby bridging the newly transcribed lipogenic genes from RNA polymerase II to SRSF1 and the U1-70K-containing RNA splicing machinery. This mTORC1-regulated, multi-protein complex promotes efficient splicing and stability of lipogenic transcripts, resulting in fatty acid synthesis and cancer cell proliferation. These results elucidate FAM120A as a critical transcription co-factor that connects mTORC1-dependent gene regulation programs for anabolic cell growth.
DOI: 10.6084/m9.figshare.23319938.v1
title: CCES 2018 Acoustic Study Detection Data

description:  Beaked whale detection data analyzed in PAMGuard (pamguard.org) and PAMpal (https://cran.r-project.org/web/packages/PAMpal/index.html) and saved as an 'Acoustic Study' R object (epacific_study.rds).  
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DOI: 10.6084/m9.figshare.27176145.v3
title: Dataset Supporting the Bibliometric and Altimetric Review of Artificial Intelligence Use in Cariology

description: This dataset contains bibliometric and altimetric data from 175 articles on the use of Artificial Intelligence (AI) in cariology. It includes article titles, authors, study designs, diagnostic methods, citation counts, journal impact factors, publication years, and author affiliations. The data were collected on February 12, 2024, from the Web of Science Core Collection and Dimensions databases. Additionally, the dataset includes the flowchart following the BIBLIO methodology and the corresponding checklist, providing a detailed overview of the data collection and analysis process.
DOI: 10.6084/m9.figshare.27224772.v3
title: <i>Toona sinensis</i> (Chinese Toon) Whole Genome Sequencing

description: This dataset consists of the VCF files from the whole-genome sequencing of <i>Toona sinensis</i>, including two files: '<code>Toona_sinensis.raw.filter.snp.vcf_1.vcf.gz'</code> is the VCF file before filtering, and '<code>filterd_final_2.vcf.gz'</code> is the VCF file after filtering.
DOI: 10.6084/m9.figshare.686080.v2
title: A toolkit to implement 5S in a laboratory environment

description: This file sent includes several files used in our group to implement the 5S methodology in a laboratory environment. We hope that this toolkit will help other people interested in using 5S in their own organization. The development of this resource was partly funded by NSF Award 1241328 "INSPIRE: Modeling and optimization of DNA manufacturing processes".
DOI: 10.6084/m9.figshare.9638939.v2
title: Global karst springs hydrograph dataset for research and management of the world’s fastest-flowing groundwater

description: World Karst Spring hydrograph (WoKaS) database is a compilation of karst spring discharge observations from across the globe. The database consist of over 400 spring discharge datasets which were collected from researchers, national hydrological databases and agencies in different countries and some of the datasets were digitized from published articles. The WoKaS database aims to serve as resourceful tool which will promotes large-scale karst hydrological studies, improves management, protection, process and comparative understanding of the karst aquifer systems.
DOI: 10.15482/usda.adc/1529368
title: Agronomic Calendars for the Bushland, Texas Cotton Datasets

description: This dataset consists of agronomic calendars for each growing season (year) when upland cotton [Gossypium hirsutum (L.)] was grown for fiber and seed at the USDA-ARS Conservation and Production Laboratory (CPRL), Soil and Water Management Research Unit (SWMRU) research weather station, Bushland, Texas (Lat. 35.186714°, Long. -102.094189°, elevation 1170 m above MSL). In 2000, 2001, 2008, 2020, and 2021, cotton was grown on four large, precision weighing lysimeters, each in the center of a 4.44 ha square field. In 2002, 2010, and 2012, cotton was grown on two large, precision weighing lysimeters and their surrounding 4.44 ha square fields. In 2003 and 2004, cotton was grown on only one large weighing lysimeter in rotation with sorghum. The four fields were contiguous. The fields were designated northeast (NE), southeast (SE), northwest (NW), and southwest (SW), and were themselves arranged in a larger square with the fields in four adjacent quadrants of the larger square. Irrigation was by linear move sprinkler system in from 2000 through 2012. In 2020 and 2021, the NE and SE fields were irrigated using subsurface drip irrigation (SDI), while the NW and SW fields were irrigated using a linear move system. Cotton was sometimes grown as a dryland crop, sometimes as a fully irrigated crop, and sometimes as a deficit irrigated crop. Irrigations designated as full were managed to replenish soil water used by the crop on a weekly or more frequent basis as determined by soil profile water content readings made with a neutron probe to 2.4-m depth in the field. Irrigations designated as deficit typically involved full irrigation to establish the crop. A crop calendar for each season lists by date the pertinent agronomic and maintenance operations (e.g., planting, thinning, fertilization, pesticide application, lysimeter maintenance, harvest). For each season there is one crop calendar for each two lysimeters (NE and SE, and/or NW and SW).
    These datasets originate from research aimed at determining crop water use (ET), crop coefficients for use in ET-based irrigation scheduling based on a reference ET, crop growth, yield, harvest index, and crop water productivity as affected by irrigation method, timing, amount (full or some degree of deficit), agronomic practices, cultivar, and weather. Prior publications have focused on ET, crop coefficients, and crop water productivity. Crop coefficients have been used by ET networks. The data have utility for testing simulation models of crop ET, growth, and yield and have been used for testing, and calibrating models of ET that use satellite and/or weather data.
See the README for descriptions of each data file.
DOI: 10.17632/3vssyrcxy6
title: Revised Replication Files for "How Do Endowments Determine Trade? Quantifying the Output Mix, Factor Price, and Skill-Biased Technology Channels" by Peter Morrow and Daniel Trefler

description: This repository contains cleaned and updated files for Morrow and Trefler JIE 2022. This supersedes the files in "Replication Files for "How Do Endowments Determine Trade? Quantifying the Output Mix, Factor Price, and Skill-Biased Technology Channels" by Peter Morrow and Daniel Trefler"
DOI: 10.17632/zj4th6xvdp
title: Ash Gourd Leaf Healthy and Disease Dataset

description: The dataset presentes the pioneering efforts to document and categorize the health conditions of Ash Gourd (Benincasa hispida) plants in Bangladesh, focusing on five main categories: Healthy, Aphid, Downy Mildew, Leaf Curl, and Leaf Miner. This structured dataset comprises 2676 images, structured into the five categories of Healthy, Aphid, Downy Mildew, Leaf Curl, and Leaf Miner for versatile analysis and model training. Specifically, the Healthy class includes 803 images, the Aphid class contains 140 , Downy Mildew comprises 1,066 images, Leaf Curl has 528 images, and the Leaf Miner class totals 139 images. This organized approach not only facilitates in-depth analysis but also supports the development of machine learning models for disease classification, providing valuable insights into Ash Gourd plant health.
DOI: 10.6084/m9.figshare.19612110.v4
title: Influences of Phytoplankton, Zooplankton, and Bacteria on the Distributions of Dimethylsulfide and Dimethylsulfoniopropionate in the Bohai and Yellow Seas

description: Description of sampling stations and variations in some parameters (temperature, salinity, Chl a, DMS, DMSPd,p, DMSP lyase activity (DLA), DMSP consuming bacteria (DCB), DMSO consuming bacteria (DMSO-CB), bacteria, and picophytoplankton) in situ of the Bohai Sea and the Yellow Sea during autumn 2020 and deck zooplankton grazing experiment.
DOI: 10.6084/m9.figshare.23935611.v3
title: ChillsDB 2.0: Individual Differences in Aesthetic Chills Among 2,900+ Participants in Southern California

description: ChillsDB 2 is an extension of prior research developing a validated database of audiovisual aesthetic chills stimuli. The original ChillsDB study pioneered an ecologically-valid approach to identify chills-eliciting videos using social media mining. 204 candidate stimuli were tested on 600+ participants to validate a highly reliable subset for chills induction.The present dataset provides additional data on individual differences in chills responses from a sample of 2,937 participants residing in Southern California. Leveraging the validated ChillsDB stimuli, the current study exposed participants to randomized content and gathered questionnaires on personality traits, absorption tendencies, positive emotions, and demographics alongside detailed chills response data. State affect ratings and political orientation variables were also captured.This geographically focused dataset enables investigating how psychological, social, and biological factors relate to variability in aesthetic chills phenomena across a large and diverse sample from this specific region. The inclusion of validated stimuli from the original ChillsDB allows for controlled elicitation of chills experiences. The additional individual difference measures facilitate novel examinations into the predictors and correlates of chills responses.
DOI: 10.6084/m9.figshare.24771738.v2
title: NL2SQL for BI Dataset

description: NL2SQL for BI dataset
DOI: 10.6084/m9.figshare.23515398.v1
title: SNP dataset in VCF format and SSR dataset for Taxus cuspidata

description: SNP call data for all samples produced by Stacks in VCF format, and SSR dataset in tab-separated format with columns as neutral nuclear microsatellite markers and rows as individual samples as obtained from FlexiBinv2.
DOI: 10.6084/m9.figshare.27072688.v2
title: Supporting information and Data for "Microplastic Contamination in Chinese Topsoil from 1980 to 2050"

description: Soil microplastic data and Supporting information
DOI: 10.17632/2jfd6cfctm
title: FAR

description: FAR study; correlation preoperative FAR with incidence of pancreatic fistula and related complications of pancreatic surgery
DOI: 10.17632/9mgvzhfrfj
title: The Database of Predictive Targets of miRNA let-7b 

description: We filtered let-7b binding sites in the 3'UTRs of transcripts encoding proteins involved in fibrogenesis in Mø using online RNA databases. Briefly, we intersected the top 100 most reliable target genes from the miRNA target prediction websites (TargetScan, miRDB and miRBase) and then selected the genes most likely to be associated with fibrosis in macrophages for verification.
DOI: 10.17632/ckgvn4pchb
title: Replication Package for: Energy price shocks, unemployment, and monetary policy.

description: The .m files reproduce the main figures in the paper, calling the .mod files in Dynare.

'PolRule.mod' and 'OptPol.mod' are used to reproduce the baseline results under policy-rules and the optimal policy of Figures 2-3-4 and of the counterfactual in Figure D2 in the Appendix.

'OptPol_effwd.mod', 'OptPol_ineffwdc.mod', 'OptPol_Ss.mod' are the mod files required to perform the decomposition of Figure 5.

'PolRule_riskaverse.mod' and 'OptPol_riskaverse.mod' are used to reproduce the results of the counterfactual of Figure D1 in the Appendix.

'PolRule_CES.mod' and 'OptPol_CES.mod' are used to reproduce the results of the counterfactual of Figure D3 in the Appendix.
DOI: 10.17632/dy97xr6t8h
title: Dataset for Designing extrusion dies on the basis of eXplainable Artificial Intelligence

description: This dataset contains the porthole die data used to develop a design support tool for aluminium extrusion porthole dies based on eXplainable IA. 
The tool is useful for dies with 4 cavities and 4 ports per cavity. 
Dataset includes the geometrical data related to 596 different ports from 88 first-trial 4 cavities and 4 ports per cavity dies. 
In terms of the R² metric and the results obtained with the application examples, the results obtained with this ML-based model are significantly better than those of a previous model based on linear regression. 
It also includes the results and geometries of the FEM simulations performed to validate the model.
DOI: 10.6084/m9.figshare.1558204.v2
title: Data for Population and individual level dynamics of intestinal microbiota of a small primate

description: The files for article "Population and individual level dynamics of intestinal microbiota of a small primate": - metadata and processed data in Excel spreadsheet - OTU data for each sample in shared file - Taxonomical data for OTUs in taxonomy file
DOI: 10.6084/m9.figshare.16649944.v1
title: Population size, time to extinction and allelic richness data

description: Raw data (Scientific article "Genotype diversity promotes the persistence of Daphnia populations exposed to severe copper stress"):<br>- Sheet 1 "Pop_size" : population size data (both raw and ln-transformed) with info about day , population ID, expected copper concentrations, and food regime<br>- Sheet 2 "Time_to_extinction" : time to extinction data (day)<br><br>- Sheet 3 "Allelic_richness" : raw data of the dynamic of allelic richness through time, population size and expected copper concentrations at sampling days.<br>
DOI: 10.6084/m9.figshare.21753545.v4
title: Discretized MNIST for Digital Circuits and Neural Networks based on Acid-Base Chemistry implemented by Robotic Fluid Handling

description: A discretized version (binary & 3-bit) version of the MNIST dataset for Nature Communications paper "Digital Circuits and Neural Networks based on Acid-Base Chemistry implemented by Robotic Fluid Handling "
DOI: 10.6084/m9.figshare.22012355.v1
title: Dataset for The role of rice cultivation in changes in atmospheric methane concentration and the Global Methane Pledge

description: This dataset contains data used to analyze the effects of biochar application on methane, nitrous oxide, rice yield, global warming potential (GWP), and yield-scaled GWP (i.e., GHGI) in rice fields.
DOI: 10.17632/rc4fyffnxw
title: ITOOL Slices

description: Measurements of fibre-free zones (so called “openings” or “fish eyes”) in fibrous plies in structurally stitched multilayer carbon-fibre preforms.
DOI: 10.6084/m9.figshare.13083947.v1
title: Supplementary Material for: Genetic Spectrum of Left Ventricular Non-Compaction in Paediatric Patients

description: <b><i>Introduction:</i></b> Left ventricular non-compaction (LVNC) represents a genetically heterogeneous cardiomyopathy which occurs in both children and adults. Its genetic spectrum overlaps with other types of cardiomyopathy. However, LVNC phenotypes in different age groups can have distinct genetic aetiologies. The aim of the study was to decipher the genetic spectrum of LVNC presented in childhood. <b><i>Patient Group and Methods:</i></b> Twenty patients under the age of 18 years diagnosed with LVNC were enrolled in the study. Target sequencing and whole-exome sequencing were performed using a panel of 108 cardiomyopathy-associated genes. Pathogenic, likely pathogenic, and variants of unknown significance found in genes highly expressed in cardiomyocytes were considered as variants of interest for further analysis. <b><i>Results:</i></b> The median age at presentation was 8.0 (0.1–17) years, with 6 patients presenting before 1 year of age. Twelve (60%) patients demonstrated reduced ejection fraction. Right ventricular (RV) dilation was registered in 6 (30%), often in combination with reduced RV contractility (25%). Almost half (45%) of the patients demonstrated biventricular involvement already at disease presentation. For pathogenic and likely pathogenic variants, the positive genotyping rate was 45%, and these variants were found mainly in non-contractile structural sarcomeric genes (<i>ACTN2</i>, <i>MYPN</i>, and <i>TTN</i>) or in metabolic and signal transduction genes (<i>BRAF</i> and <i>TAZ</i>). Likely pathogenic <i>TAZ</i> variants were detected in all 5 patients suspected of having Barth syndrome. No pathogenic or likely pathogenic variants were found in genes encoding for sarcomeric contractile proteins, but variants of unknown significance were detected in 3 out of 20 patients (<i>MYH6</i>, <i>MYH7</i>, and <i>MYLK2</i>). In 4 patients, variants of unknown significance in ion-channel genes were detected. <b><i>Conclusion:</i></b> We detected a low burden of contractile sarcomeric variants in LVNC patients presenting below the age of 18 years, with the major number of variants residing in non-contractile structural sarcomeric genes. The identification of the variants in ion-channel and related genes not previously associated with LVNC in paediatric patients requires further examination of their functional role.
DOI: 10.6084/m9.figshare.28135763.v5
title: Sequences MG and 16S

description: Fastq files per sample for shotgun sequencing samples and a .tar file containing the fastq files for 16S sequencing.We also have uploaded both metadata files as well for each sequencing type.
DOI: 10.17632/4hfm6p9dgw
title: Crop row identification and cluster segmentation for stand count (CRISCO) ImageJ plugin source code

description: The CRISCO plugin was developed using the free and open-source ImageJ image analysis software platform to perform stand counting on UAS imagery or other suitable images based on profile and geometry features from an image. The uploaded folder contains the fully functional CRISCO plugin source code, enabling users to understand the methodology employed. A comprehensive instruction file is also included to guide users in setting up and executing the plugin on their computers. Kindly contact the corresponding and the lead author to collaborate or participate in further development of the plugin.
DOI: 10.17632/4sgtjvc752
title: Data for: Microkinetic analysis of acetone hydrogenation over supported Pt catalysts

description: This data set includes estimated rates of acetone hydrogenation at zero time on stream for various species partial pressures and temperatures; a matlab script used for simple solution of the microkinetic model in a specified rate control scenario for a given initial parameter set and experimental conditions; and a matlab script that performs data reconciliation and parameter estimation.
DOI: 10.17632/bpwmxzhjx2
title: Welfare Redistribution Through Flexibility - Road Transport Profiles

description: Code and data to first calculate the driving profiles, charging profiles, and parking profiles and second to cluster those profiles to different mobility clusters.
DOI: 10.17632/cm8pxdt5pm
title: Identification of Pathogenic Immune Cell Subsets in Checkpoint Inhibitor-induced Myocarditis

description: Immune checkpoint inhibitors (ICIs) are monoclonal antibodies used widely to activate the immune system against tumor cells. Despite their therapeutic benefits, ICIs are known to cause immune-related adverse events (irAE) such as myocarditis, a rare but serious side effect with up to 50% mortality. To identify pathogenic immune subset(s) responsible for ICI myocarditis and other irAE, we performed single cell mass cytometry (CyTOF) on peripheral blood mononuclear cells from patients and controls with irAE including four patients with ICI myocarditis.
DOI: 10.6084/m9.figshare.28952981.v3
title: Patterns of seed rain into exotic plantation forests, Hawkes Bay, New Zealand

description: <b>Abstract: </b>Ecological restoration to mitigate human impacts on the environment is increasingly widespread, particularly regarding forest ecosystems. Exotic plantation forests have been posited as beneficial in the restoration of forest ecosystems by creating a favourable microclimate in the understorey for native vegetation to establish. Seed dispersal into plantation forests is a vital part of this process. We sampled seed rain across a 6-month period at three sites in mature (&gt;20 years) <i>Pinus radiata </i>plantation forest in the Hawke’s Bay region of Aotearoa New Zealand across a gradient from native forest edge into the plantation forest. Seed traps were exponentially spaced along three 620 m transects at each site. Vegetation sampling of the understorey was undertaken to compare vegetation composition with that of the seed rain. Over the sampling period 2,061 seeds of 19 different species were captured. Distance from native forest edge had a significant negative effect on the species richness and abundance of seed rain for both dry seeded and fleshy fruited seeds, as well as seeds from woody species. However, this effect was significantly stronger at the Blowhard site, which was adjacent to a more diverse, mature native forest. <i>Cirsium </i>sp.<i> </i>and <i>Coriaria arborea var. arborea </i>were present in the seed rain but not in the plantation understorey vegetation. Seed rain was most abundant and diverse in the first 20 m of the plantation forest from the native forest edge. The presence of understorey vegetation along the transects, including 18 woody species that were not captured in the seed rain, suggests seed rain is penetrating the plantation forest up to 620 m, albeit at a lesser frequency beyond 20 m from the native edge. Frequent islands of native forest within a plantation forest matrix are likely to act as nuclei to improve the richness and cover of regenerating native plants in the plantation understorey.
DOI: 10.6084/m9.figshare.4724671.v2
title: CIFAR10-DVS

description: This folder contains the neuromorphic vision dataset named as 'CIFAR10-DVS' obtained by displaying the moving images of the CIFAR-10 dataset (http://www.cs.toronto.edu/~kriz/cifar.html) on a LCD monitor. The dataset is used for event-driven scene classification and pattern recognition. These recordings can be displayed using the jAER software (http://sourceforge.net/p/jaer/wiki/Home) using filters DVS128.<br>The files "dat2mat.m" and "mat2dat.m" in (http://www2.imse-cnm.csic.es/caviar/MNIST_DVS/) can be used to transfer lists of events between jAER format (.dat or .aedat) and matlab.<br><b><i>Please cite it if you intend to use this dataset.</i></b><b><i> Li H, Liu H, Ji X, Li G and Shi L (2017) CIFAR10-DVS: An Event-Stream Dataset for Object Classification. Front. Neurosci. 11:309. doi: 10.3389/fnins.2017.00309</i></b><br><br><br>The high-sensitivity DVS used in the recording reported in:P. Lichtsteiner, C. Posch, and T. Delbruck, “A 128×128 120 dB 15 μs latency asynchronous temporal contrast vision sensor,” IEEE J. Solid-State Circuits, vol. 43, no. 2, pp. 566–576, Feb. 2008<br>A single 128x128 pixel DVS sensor was placed in front of a 24" LCD monitor. Images of CIFAR-10 were upscaled to 512 * 512 through bicubic interpolation, and displayed on the LCD monitor with circulating smooth movement. A total of 10,000 event-stream recordings in 10 classes(airplane, automobile, bird, cat, deer, dog, frog, horse, ship, truck) with 1000 recordings per classes were obtained.
DOI: 10.6084/m9.figshare.5117245.v1
title: De novo assembly of Paeonia rockii and Paeonia ostii

description: <strong> </strong><strong> </strong>De novo assembly of <em>Paeonia rockii</em> and <em>Paeonia ostii</em>