cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25919/5rzh-m188
title: Parkes observations for project P1338 semester 2024OCTS_20

description: Fast radio bursts (FRBs) are millisecond-duration radio bursts of extragalactic origin. Since the discovery of the first FRB in the archival Parkes/Murriyang multibeam data, a broad dichotomy in population has emerged. Some FRBs have been seen to be repeating, while others are not, despite a significant amount of follow-up using different radio telescopes. The repeating FRB 20240114A was recently discovered by CHIME/FRB, which has been seen to have an exceptionally high burst activity. Such extreme burst activity has not been seen in any other source. The repeating FRBs, such as FRB 20240114A, provide an unparalleled window into their circumburst environment due to their repeating nature, which can be used to constrain possible progenitor models and test underlying emission mechanisms. The previous Parkes/Murriyang source follow-up has also revealed intriguing spectro-polarimetric properties, such as frequency-dependent evolution of burst central frequency or chromaticity, a possible activity window, significantly large circular polarisation (CP), and frequency-dependent CP. These properties hold the key towards understanding the circumburst environment of the FRBs, and test possible progenitor models. A large bandwidth instrument with reliable polarimetry has been critical in uncovering these properties. The ultra-wideband low (UWL) receiver on Parkes/Murriyang is ideally suited to explore the source's wideband spectro-temporal and polarimetric behaviour. We propose a campaign to regularly follow up FRB 20240114A to ascertain its long-term evolution of spectro-temporal properties.
DOI: 10.6084/m9.figshare.c.3615581_d3
title: Additional file 3: Table S3. of The early immune response to infection of chickens with Infectious Bronchitis Virus (IBV) in susceptible and resistant birds

description: Genes found to be differentially expressed between susceptible and resistant lines in response to IBV infection in the trachea. (XLS 107 kb)
DOI: 10.6084/m9.figshare.c.3615548_d9
title: MOESM8 of Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies

description: Additional file 8. Compressed rar file containing four krona plots. The krona plots illustrate the results of the 16S rRNA gene amplicon analysis conducted for the March and May biogas fermenter samples.
DOI: 10.6084/m9.figshare.c.3615581_d4
title: Additional file 2: Table S2. of The early immune response to infection of chickens with Infectious Bronchitis Virus (IBV) in susceptible and resistant birds

description: Gene expression differences found to be inherent between susceptible and resistant lines in the trachea. (XLS 386 kb)
DOI: 10.6084/m9.figshare.c.3615608_d1
title: MOESM1 of Widespread recovery of methylation at gametic imprints in hypomethylated mouse stem cells following rescue with DNMT3A2

description: Additional file 1: Table S1. Details of the primers used for RT-qPCR during the study.
DOI: 10.6084/m9.figshare.c.3615644_d2
title: Additional file 2: of A DNA vaccine encoding the viral hemorrhagic septicemia virus genotype IVb glycoprotein confers protection in muskellunge (Esox masquinongy), rainbow trout (Oncorhynchus mykiss), brown trout (Salmo trutta), and lake trout (Salvelinus namaycush)

description: Anti-VHSV antibody level in immunized muskellunge pre and post VHSV-IVb challenge.á (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3615659_d1
title: Additional file 5: Figures S3. of The biodiversity hotspot as evolutionary hot-bed: spectacular radiation of Erica in the Cape Floristic Region

description: BAMM diversification rate results: a) BAMM tree as presented in Fig.Â 1, including labels for tips and nodes referred to in the text; branches subtending Erica, Calluna and Daboecia are not to scale. b) Probabilities of overall numbers of diversification shifts inferred using BAMM. (ZIP 2444Â kb)
DOI: 10.6084/m9.figshare.c.3615662_d1
title: Additional file 2: of A novel enrichment strategy reveals unprecedented number of novel transcription start sites at single base resolution in a model prokaryote and the gut microbiome

description: contains Table S1. (ZIP 9431Â kb)
DOI: 10.6084/m9.figshare.c.3615659_d2
title: Additional file 2: Figure S1. of The biodiversity hotspot as evolutionary hot-bed: spectacular radiation of Erica in the Cape Floristic Region

description: Phylogenetic hypotheses: best trees with bootstrap support values from RAxML analyses of a) concatenated plastid data and b) from nuclear ribosomal ITS (with taxa showing conflicting positions according to the two gene trees highlighted in yellow); and c) and d) of the combined data (excluding conflicting taxa): c) with and d) without Erica pauciovulata (exclusion of which leads to increased support for the Cape clade from 70Â % to 89Â %). (ZIP 8409Â kb)
DOI: 10.6084/m9.figshare.c.3615641_d5
title: Additional file 19: of The complex pattern of epigenomic variation between natural yeast strains at single-nucleosome resolution

description: Tables of nucleosomal positions in each strain.
DOI: 10.6084/m9.figshare.c.3615662_d2
title: Additional file 1: of A novel enrichment strategy reveals unprecedented number of novel transcription start sites at single base resolution in a model prokaryote and the gut microbiome

description: Supplement. Contains all Supplementary Notes and Supplementary Figures and Table S2. (GTF 2008Â kb)
DOI: 10.6084/m9.figshare.c.3615641_d15
title: Additional file 22: of The complex pattern of epigenomic variation between natural yeast strains at single-nucleosome resolution

description: Table of SNEP detection between BY and YJM strains.
DOI: 10.6084/m9.figshare.c.3615641_d17
title: Additional file 18: of The complex pattern of epigenomic variation between natural yeast strains at single-nucleosome resolution

description: Number of well-positioned and fuzzy nucleosomes mapped in each strain.
DOI: 10.6084/m9.figshare.c.3615641_d18
title: Additional file 21: of The complex pattern of epigenomic variation between natural yeast strains at single-nucleosome resolution

description: Table of SNEP detection between BY and RM strains.
DOI: 10.6084/m9.figshare.c.3615707_d1
title: Additional file 1: of Molecular evolution of Odorant-binding proteins gene family in two closely related Anastrepha fruit flies

description: Odorant-binding protein genes from Ceratitis capitata, Drosophila melanogaster, Bactrocera dorsalis, Rhagoletis suavis and Rhagoletis pomonella used in the phylogenetic analyses. (XLSX 10 kb)
DOI: 10.15468/dl.pxjwpt
title: Occurrence Download

description: A dataset containing 8377 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinus virginiana Mill."
 ]
}

 The dataset includes 8377 records from 209 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032774-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3615641_d21
title: Additional file 5: of The complex pattern of epigenomic variation between natural yeast strains at single-nucleosome resolution

description: Table of sequence polymorphisms and expression differences of 23 chromatin modifiers among the BY, RM and YJM strains.
DOI: 10.6084/m9.figshare.c.3615713_d2
title: Additional file 1: Fig. S1-3. of Wild cricket social networks show stability across generations

description: Plots of the full (left box in each panel) and reduced (right box in each panel) simulations and their predictive distances (y axis). The predictive distance is the difference between the simulated values and the real value from the network. S1 is for mean path length, S2 for degree correlation and S3 for clustering coefficient. See Methods (in the main text) for details on how these were calculated and see Results for which comparisons are statistically significant. (ZIP 21Â kb)
DOI: 10.6084/m9.figshare.c.3615716_d1
title: Additional file 1. of Optimization of ethylene glycol production from (d)-xylose via a synthetic pathway implemented in Escherichia coli

description: Log2 transformed expression levels of candidate glycolaldehyde reductases
DOI: 10.6084/m9.figshare.c.3615641_d23
title: Additional file 12: of The complex pattern of epigenomic variation between natural yeast strains at single-nucleosome resolution

description: Table of epidiv values of all genes.
DOI: 10.6084/m9.figshare.c.3615725_d1
title: Additional file 1: of Are distinctive risk indicators associated with different stages of caries in children? A cross-sectional study

description: Data set raw data. (XLSX 82Â kb)
DOI: 10.6084/m9.figshare.c.3615641_d24
title: Additional file 11: of The complex pattern of epigenomic variation between natural yeast strains at single-nucleosome resolution

description: Table of clusters of genes sharing similar chromatin variation profiles in the RM/YJM comparison (A) or in the BY/YJM comparison (B).
DOI: 10.5281/zenodo.13950406
title: Kimura_SeaIceData

description: Data used in a publication
DOI: 10.5281/zenodo.13950405
title: Kimura_SeaIceData

description: Description

The two files DATA_GRL_KIMURA2024_ICEX2020.csv and DATA_GRL_KIMURA2024_ICEX2022.csv contain data used in "Sea-Ice Deformations at the Submesoscale and Below during the Melting Season" by Satoshi Kimura. These data sets are taken as a part of Ice Exercise (ICEX) in 2020 and 2022 led by Arctic Submarine Laboratory.

Format

The data files contain 32 arrays in csv format, which are timeseries indicated by the first variable "tt". DATA_GRL_KIMURA2024_ICEX2020.csv contains the data from year 2020, and DATA_GRL_KIMURA2024_ICEX2022.csv is from year 2022. The data can be read using python for example



import pandas as pd

df = pd.read_csv('DATA_GRL_KIMURA2024_ICEX2020.csv')print(df.to_string()) 


Here, we describe the variable name and its descritpion.

### Time information



 tt:  Number of days since the epoch, (default: '1970-01-01T00:00:00')

year:

Year of the observation

month: Month of the observation

day: day

hour: hour

minute: minute

second: second


### Three devices (vertices ‘a’, ‘b’, and ‘c’) that form a triangle to compute deformation rates



 DeviceName_a: Name of the device at the vertex ‘a’

DeviceName_b: Name of the device at the vertex ‘b’

DeviceName_c: Name of the device at the vertex ‘c’


### Longitude and latitude are in decimal, and ‘-‘ in longitude indicates west



lon_a: Longitude of DeviceName_a

lat_a:  Latitude of DeviceName_a

lon_b: Longitude of DeviceName_b

lat_b: Latitude of DeviceName_b

lon_c: Longitude of DeviceName_c

lat_c: Latitude of DeviceName_c


### Properties of the triangle enclosed by the vertices ‘a’, ‘b’, and ‘c’



area: Area enclosed by the vertices ‘a’, ‘b’, and ‘c’ [m2]

u_a: Zonal velocity of DeviceName_a [m/s]

v_a: Meridional velocity of DeviceName_a [m/s]

u_b: Zonal velocity of DeviceName_b [m/s]

v_b: Meridional velocity of DeviceName_b [m/s]

u_c: Zonal velocity of DeviceName_c [m/s]

v_c: Meridional velocity of DeviceName_b [m/s]


### Velocity gradients inside the triangle, computed from equation (1)



ux: Zonal gradient of the zonal velocity [1/s]

uy: Meridional gradient of the zonal velocity [1/s]

vx: Zonal gradient of the meridional velocity [1/s]

vy: Meridional gradient of the zonal velocity [1/s]


### Invariants described in section 2.1



shr: Shear strain rate defined in equation (2)   [1/s]

div: Divergence rate defined in equation (2)  [1/s]

tot: Strain rate magnitude, tot^2 = shr^2 + div^2 [1/s]

theta: Relative contribution of shr and div, tan(theta) = shr/div, defined in equation (3)


### Time rate of changes in strain rates



alpha: Defined in equation (5)

shr_t: Time derivative of shr [1/s2]

div_t: Time derivative of div [1/s2]

theta_t: Time derivative of theta, tan(theta_t) = shr_t/div_t
DOI: 10.5281/zenodo.14429904
title: Kimura_SeaIceData

description: Description

The two files DATA_GRL_KIMURA2024_ICEX2020.csv and DATA_GRL_KIMURA2024_ICEX2022.csv contain data used in "Sea-Ice Deformations at the Submesoscale and Below during the Melting Season" by Satoshi Kimura. These data sets are taken as a part of Ice Exercise (ICEX) in 2020 and 2022 led by Arctic Submarine Laboratory.

Format

The data files contain 32 arrays in csv format, which are timeseries indicated by the first variable "tt". DATA_GRL_KIMURA2024_ICEX2020.csv contains the data from year 2020, and DATA_GRL_KIMURA2024_ICEX2022.csv is from year 2022. The data can be read using python for example



import pandas as pd

df = pd.read_csv('DATA_GRL_KIMURA2024_ICEX2020.csv')print(df.to_string()) 


Here, we describe the variable name and its descritpion.

### Time information



 tt:  Number of days since the epoch, (default: '1970-01-01T00:00:00')

year:

Year of the observation

month: Month of the observation

day: day

hour: hour

minute: minute

second: second


### Three devices (vertices ‘a’, ‘b’, and ‘c’) that form a triangle to compute deformation rates



 DeviceName_a: Name of the device at the vertex ‘a’

DeviceName_b: Name of the device at the vertex ‘b’

DeviceName_c: Name of the device at the vertex ‘c’


### Longitude and latitude are in decimal, and ‘-‘ in longitude indicates west



lon_a: Longitude of DeviceName_a

lat_a:  Latitude of DeviceName_a

lon_b: Longitude of DeviceName_b

lat_b: Latitude of DeviceName_b

lon_c: Longitude of DeviceName_c

lat_c: Latitude of DeviceName_c


### Properties of the triangle enclosed by the vertices ‘a’, ‘b’, and ‘c’



area: Area enclosed by the vertices ‘a’, ‘b’, and ‘c’ [m2]

u_a: Zonal velocity of DeviceName_a [m/s]

v_a: Meridional velocity of DeviceName_a [m/s]

u_b: Zonal velocity of DeviceName_b [m/s]

v_b: Meridional velocity of DeviceName_b [m/s]

u_c: Zonal velocity of DeviceName_c [m/s]

v_c: Meridional velocity of DeviceName_b [m/s]


### Velocity gradients inside the triangle, computed from equation (1)



ux: Zonal gradient of the zonal velocity [1/s]

uy: Meridional gradient of the zonal velocity [1/s]

vx: Zonal gradient of the meridional velocity [1/s]

vy: Meridional gradient of the zonal velocity [1/s]


### Invariants described in section 2.1



shr: Shear strain rate defined in equation (2)   [1/s]

div: Divergence rate defined in equation (2)  [1/s]

tot: Strain rate magnitude, tot^2 = shr^2 + div^2 [1/s]

theta: Relative contribution of shr and div, tan(theta) = shr/div, defined in equation (3)


### Time rate of changes in strain rates



alpha: Defined in equation (5)

shr_t: Time derivative of shr [1/s2]

div_t: Time derivative of div [1/s2]

theta_t: Time derivative of theta, tan(theta_t) = shr_t/div_t
DOI: 10.6084/m9.figshare.c.3615767_d1
title: Additional file 5: Table S2. of Axitinib and sorafenib are potent in tyrosine kinase inhibitor resistant chronic myeloid leukemia cells

description: Anti-GAB2 IP of Sorafenib vs DMSO treated cells. SILAC ratios are normalized to GAB2 and log2 transformed. Significant affected proteins are determined using Significance A (MaxQuant, p
DOI: 10.6084/m9.figshare.c.3615737_d8
title: Additional file 1: of Potential for evolution of complex defense strategies in a multi-scale model of virus-host coevolution

description: C++ simulation source codes. (ZIP 59Â kb)
DOI: 10.6084/m9.figshare.c.3615767_d5
title: Additional file 6: Table S3. of Axitinib and sorafenib are potent in tyrosine kinase inhibitor resistant chronic myeloid leukemia cells

description: Anti-GAB2 IP of Axitinib vs DMSO treated cells. SILAC ratios are normalized to GAB2 and log2 transformed. Significant affected proteins are determined using Significance A (MaxQuant, p
DOI: 10.6084/m9.figshare.c.3615797_d1
title: Additional file 2: of Comprehensive identification of sexually dimorphic genes in diverse cattle tissues using RNA-seq

description: Results of the Statistical tests. (XLSX 2242Â kb)
DOI: 10.6084/m9.figshare.c.3615842_d3
title: Additional file 4: of Circulating miRNA signatures of early pregnancy in cattle

description: Differences in miRNA levels validated by qPCR. List of differences (P
DOI: 10.6084/m9.figshare.c.3615842_d4
title: Additional file 3: of Circulating miRNA signatures of early pregnancy in cattle

description: PCR array data. Normalised expression data and differential expression analysis results for bovine plasma miRNAs, generated using PCR arrays. (XLSX 58Â kb)
DOI: 10.6084/m9.figshare.c.3615851_d2
title: Additional file 3: of Finite element analysis of cementless femoral stems based on mid- and long-term radiological evaluation

description: Comparison of stress shielding (TablesÂ 4 and 5). (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3615860_d1
title: Additional file 1: of Molecular assessment of bacterial vaginosis by Lactobacillus abundance and species diversity

description: Vaginal sample information and nucleotide-based microarray data (signal to background ratios of fluorescence intensity for each probe). (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.c.3615863_d1
title: Additional file 2: of 
                     Lactobacillus oligofermentans glucose, ribose and xylose transcriptomes show higher similarity between glucose and xylose catabolism-induced responses in the early exponential growth phase

description: Processed RNA-seq data and the results of differential expression analysis for three time points: 20 h (excel sheet 1), 24 h (excel sheet 2), 30 h (excel sheet 3). (XLSX 915 kb)
DOI: 10.6084/m9.figshare.c.3615851_d3
title: Additional file 1: of Finite element analysis of cementless femoral stems based on mid- and long-term radiological evaluation

description: Locations and incidence of spot welds (Fig.Â 3). (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3615866_d1
title: Additional file 5: File S3. of Evidence for the recent origin of a bacterial protein-coding, overlapping orphan gene by evolutionary overprinting

description: Alignment of the concatenated sequences with gaps deleted. (TXT 196 kb)
DOI: 10.6084/m9.figshare.c.3615851_d4
title: Additional file 2: of Finite element analysis of cementless femoral stems based on mid- and long-term radiological evaluation

description: Comparison of stress shielding ~5 and ~10Â years postoperatively (Fig.Â 5). (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3615863_d2
title: Additional file 3: of 
                     Lactobacillus oligofermentans glucose, ribose and xylose transcriptomes show higher similarity between glucose and xylose catabolism-induced responses in the early exponential growth phase

description: List of the genes containing CcpA-, RbsR- or XylR- binding motifs in their upstream regions. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.c.3615860_d3
title: Additional file 2: of Molecular assessment of bacterial vaginosis by Lactobacillus abundance and species diversity

description: The 16S rRNA amplicon sequencing data (DNA sequence, and number of reads) and the family, genus and species identification by the match with the RDP (ribosomal database project) for each 16S rRNA amplicon (V5-V7 region). (XLS 2681Â kb)
DOI: 10.6084/m9.figshare.c.3615887_d4
title: Additional file 2: of A frameshift mutation in ARMC3 is associated with a tail stump sperm defect in Swedish Red (Bos taurus) cattle

description: Sequence variants identified using the SAMtools software package that were compatible with recessive inheritance. Grey background indicates 15 sequence variants that were not polymorphic among 1147 animals of the 1000 bull genomes project. Red color indicates a coding variant compatible with recessive inheritance. The functional consequence of the alternative allele was predicted using the Variant Effect Predictor from Ensembl (see Methods). (XLSX 61Â kb)
DOI: 10.6084/m9.figshare.c.3615920_d1
title: Additional file 2: Table S2. of The relevance of the side-view in body image scales for public health: an example from two African populations

description: Summary table of the models testing the relationship between bio-anthropometrics and front-views of women body shapes. See TableÂ 1 in main text. (XLSX 11 kb)
DOI: 10.15468/dl.s4p6rh
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Homatula Nichols, 1925"
 ]
}

 The dataset includes 67 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032775-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3615920_d2
title: Additional file 1: Table S1. of The relevance of the side-view in body image scales for public health: an example from two African populations

description: Summary table of the models testing the relationship between bio-anthropometrics and front-views of menâ  s body shapes. Table provide the Pillaiâ  s trace statistic and associated F-tests from multivariate analyses of variance (MANOVA) performed on the first eight principal components of the Principal Component Analysis (PCA) on Fourier coefficients (see main text for details). Analyses were performed using the function Manova from the R package car. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3615920_d3
title: Additional file 4: Table S4. of The relevance of the side-view in body image scales for public health: an example from two African populations

description: Summary table of the models testing the relationship between bio-anthropometrics and side-views of women body shapes. See TableÂ 1 in main text. (XLSX 6 kb)
DOI: 10.6084/m9.figshare.c.3615926_d2
title: Additional file 2: of Identification of ISMyo2, a novel insertion sequence element of IS21 family and its diagnostic potential for detection of Mycobacterium yongonense

description: Distributions of IS-elements from M. yongonense and other M. intracellulare strains. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3615926_d3
title: Additional file 5: of Identification of ISMyo2, a novel insertion sequence element of IS21 family and its diagnostic potential for detection of Mycobacterium yongonense

description: Mycobacterial reference strains used in the present study and specificity of real-time PCR for the detection of the insertion sequence specific to Mycobacterium yongonense. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3615935_d1
title: Additional file 3: Table S3. of Profiling networks of distinct immune-cells in tumors

description: The resultant general immune-cell type (GIT) and DIST marker genes identified using the bioinformatics workflow. (XLS 85Â kb)
DOI: 10.6084/m9.figshare.c.3615971_d2
title: MOESM1 of Proteomic analysis of the signaling pathway mediated by the heterotrimeric Gα protein Pga1 of Penicillium chrysogenum

description: Additional file 1. Table S1. Additional information for protein identification by MS, showing the sequence of exclusive unique identified peptides and the chemical modifications present in them.
DOI: 10.6084/m9.figshare.c.3615980_d1
title: Additional file 1: of Brain region and epilepsy-associated differences in inflammatory mediator levels in medically refractory mesial temporal lobe epilepsy

description: Patient data repository. (XLSX 79 kb)
DOI: 10.6084/m9.figshare.c.3615983_d1
title: Additional file 4 of Scope and limitations of yeast as a model organism for studying human tissue-specific pathways

description: HK Enrichment. Functional enrichment analysis of different subsets of HK genes. (ZIP 358 Kb)
DOI: 10.6084/m9.figshare.c.3615983_d2
title: Additional file 3 of Scope and limitations of yeast as a model organism for studying human tissue-specific pathways

description: Core gene alignment. Alignment graph of core housekeeping genes. (ZIP 32 Kb)
DOI: 10.6084/m9.figshare.c.3615983_d3
title: Additional file 9 of Scope and limitations of yeast as a model organism for studying human tissue-specific pathways

description: Sequence similarities. Sequence similarity between yeast and human proteins. (TXT 5888 Kb)