cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27868821.v2
title: Landscape and Local Drivers of Mangrove Community Structure and Root Plasticity in Grenada

description: We examined environmental drivers of mangrove species dominance and white mangrove root plasticity across basin and fringe forests in Grenada. Landscape and local-scale models revealed distinct patterns in species zonation and aerial root expression related to elevation, soil chemistry, and porewater conditions. This repository contains both raw data (from full vegetation surveys, rapid surveys, and species importance values) and model results (including AIC, BIC, convergence status, and model weights for landscape, local, and species dominance analyses).
DOI: 10.15468/dl.mmsqf9
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elassoma boehlkei Rohde & Arndt, 1987"
 ]
}

 The dataset includes 103 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000112-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/517p-4808
title: Parkes observations for project P1281 semester 2024OCTS_11

description: The physical origin of fast radio bursts (FRBs) has been hotly debated over the past decade until the discovery of bright radio bursts from the Galactic magnetar in 2020. The discovery of galactic FRBs has demonstrated that at least some faint FRBs can originate from normal magnetars. So far, only two active FRB repeaters are confirmed to be associated with persistent radio sources, which are normally interpreted as magnetar wind nebulae by theorists. From the most recent observations with the FAST and Parkes telescopes, we observed a particular radio source, VT 1137-0337, and we found several suspicious short-duration single pulse candidates whose dispersion measurements were very close. Notably, the signal found in the Parkes UWL data has a typical pulse width of 1 ms and exhibits an apparent broadband feature. We strongly request continuing to monitor this source with the Parkes UWL receiver, aiming to detect a significant FRB and directly reveal the nature of the active FRB repeaters.
DOI: 10.15468/dl.xjdn8c
title: Occurrence Download

description: A dataset containing 269 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhinodoras dorbignyi (Kner, 1855)"
 ]
}

 The dataset includes 269 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000113-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2n5gck
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhinodoras gallagheri Sabaj Pérez, Taphorn & Castillo G., 2008"
 ]
}

 The dataset includes 54 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000114-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.axwvtj
title: Occurrence Download

description: A dataset containing 223 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trachydoras paraguayensis (Eigenmann & Ward, 1907)"
 ]
}

 The dataset includes 223 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000115-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bb8y8g
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "TaxonKey is Ricinus communis L.",
 "Year 1970-2000"
 ]
}

 The dataset includes 140 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000116-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26054158.v1
title: 北拉萨地层的澳大利亚遗产

description: <b>此文件包括：</b>表 S1 至 S4
DOI: 10.6084/m9.figshare.28261649.v1
title: Earthworms Enhance γ-Hexachlorocyclohexane Degradation by Mediating Bacterial Community Composition in Fluvo-Aquic Soil

description: Earthworms, vital ecosystem engineers, significantly influence soil health and are known to enhance the degradation of organic pollutants by mediating microbial communities. However, the mechanisms by which earthworms affect the degradation of persistent pollutants like γ-hexachlorocyclohexane (γ-HCH) remain poorly understood. Here, a 28-day microcosm experiment was conducted to investigate the roles of two ecological types of earthworms, Eisenia fetida and Pheretima guillelmi, in promoting the degradation of γ-HCH in soil. It was found that the addition of earthworms significantly enhanced the degradation efficiency of γ-HCH by 34.96% and 40.02% in treatments with E. fetida and P. guillelmi, respectively, compared to controls, with both species exhibiting similar effectiveness. Mechanistically, earthworms lowered soil pH and increased organic matter consumption, which boosted microbial biomass and activity. They altered the soil bacterial community composition, promoting the relative abundance of γ-HCH-degrading microorganisms such as Nocardioides, Sphingomonas, and norank c Acidobacteria. Structural equation modeling revealed that earthworms influenced soil pH, affecting bacterial community composition and diversity, which led to changes in microbial biomass nitrogen (MBN) and microbial biomass carbon (MBC); the increase in MBC, in turn, promoted γ-HCH degradation. Network analysis demonstrated that earthworms enhanced the stability and complexity of microbial networks, further facilitating the degradation process. These findings highlight that earthworms can significantly accelerate the degradation of γ-HCH by modulating soil physicochemical properties and microbial communities. This study underscores the potential of utilizing earthworms as effective bioremediation agents in soils contaminated with persistent organic pollutants, offering new insights into sustainable strategies for environmental remediation.
DOI: 10.15468/dl.pdbx9g
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agamyxis pectinifrons (Cope, 1870)"
 ]
}

 The dataset includes 138 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000117-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9h4rgq
title: Occurrence Download

description: A dataset containing 4039 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Loligo vulgaris Lamarck, 1798"
 ]
}

 The dataset includes 4039 records from 106 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000118-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vk43qa
title: Occurrence Download

description: A dataset listing the 247 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "GadmGid is CAN.2.14.34_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Chordata",
 "Year 2024-2025"
 ]
}

 The dataset's 247 records were derived from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000111-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10708358
title: Data from: Unraveling the evolution of mycetophagy and phytophagy in fungus weevils (Curculionoidea: Anthribidae): Phylogenomic insights into Anthribinae paraphyly and tribal non-monophyly
DOI: 10.5281/zenodo.10708359
title: Data from: Unraveling the evolution of mycetophagy and phytophagy in fungus weevils (Curculionoidea: Anthribidae): Phylogenomic insights into Anthribinae paraphyly and tribal non-monophyly
DOI: 10.5281/zenodo.14728817
title: Climate Change Evolution Experiment: Data from Arabidopsis thaliana Common Garden at Carnegie Institution for Science at Stanford University

description: This zenodo archive provides datasets associated with the "Climate Change Evolution Experiment" from a common garden on Stanford University's campus at the Carnegie Instituion for Science from 2021-2022. This common garden had 22,723 individual Arabidopsis thaliana plants derived from 248 accession from the 1001 Genomes Consortium and 103 F2 crosses from the François Vasseur Lab. We grew the selected accessions and lines in a common garden with 14 precipitation treatments that vary in both frequency and abundance. Included in this archive are lists of the selected 248 ecotypes and the 103 F2 crosses. Additionally, archived here is a dataset of all individuals planted in the experiment, their unique location in the tray and field, and the precipitation treatment they experienced.

 

Created by: Laura Leventhal

Date: January 23, 2025
DOI: 10.5281/zenodo.14728818
title: Climate Change Evolution Experiment: Data from Arabidopsis thaliana Common Garden at Carnegie Institution for Science at Stanford University

description: This zenodo archive provides datasets associated with the "Climate Change Evolution Experiment" from a common garden on Stanford University's campus at the Carnegie Instituion for Science from 2021-2022. This common garden had 22,723 individual Arabidopsis thaliana plants derived from 248 accession from the 1001 Genomes Consortium and 103 F2 crosses from the François Vasseur Lab. We grew the selected accessions and lines in a common garden with 14 precipitation treatments that vary in both frequency and abundance. Included in this archive are lists of the selected 248 ecotypes and the 103 F2 crosses. Additionally, archived here is a dataset of all individuals planted in the experiment, their unique location in the tray and field, and the precipitation treatment they experienced.

 

Created by: Laura Leventhal

Date: January 23, 2025
DOI: 10.17909/jrmn-sr24
title: JWST NIRSpec spectroscopy and MIRI photometry for WISE J014656.66+423410.0
DOI: 10.5281/zenodo.14728845
title: Blockchain as a Solution for Cross-Border Remittance Challenges: Reducing Fees, Speeding Transactions, and Enhancing Accessibility
DOI: 10.5281/zenodo.14728846
title: Blockchain as a Solution for Cross-Border Remittance Challenges: Reducing Fees, Speeding Transactions, and Enhancing Accessibility
DOI: 10.5281/zenodo.13771213
title: PIPLOM: Prediction of In-vitro Peptide Loading On Major Histocompatibilitycomplex Class~I Molecules

description: Original IEDB data export: mhc_ligand_table_export_1713170349.tsv

Filtered IEDB data: FilteredIEDBData_24062024.gz

Features of the training set: FeaturesModelTraining_24062024.tsv.gz

Features of the validation set: Features_Unique_Validation_Epitopes_07052024.tsv.gz

Results of NETMHC and MHCFlurry for the validation set: Validation_Set_with_NETMHC_MHCFlurry_output_12062024.tsv.gz

Code for Feature Computation, Model Training, Predictions and Selected Models:  Version_2.0_2024.zip
DOI: 10.5281/zenodo.13771214
title: PIPLOM: Prediction of In-vitro Peptide Loading On Major Histocompatibilitycomplex Class~I Molecules

description: Original IEDB data export: mhc_ligand_table_export_1713170349.tsv

Filtered IEDB data: FilteredIEDBData_24062024.gz

Features of the training set: FeaturesModelTraining_24062024.tsv.gz

Features of the validation set: Features_Unique_Validation_Epitopes_07052024.tsv.gz

Results of NETMHC and MHCFlurry for the validation set: Validation_Set_with_NETMHC_MHCFlurry_output_12062024.tsv.gz

Code for Feature Computation, Model Training, Predictions and Selected Models:  Version_2.0_2024.zip
DOI: 10.5281/zenodo.14641593
title: Librispeech 100h in WebDataset Format

description: This dataset is the LibriSpeech dataset with the splits {train-clean-100, dev-clean, test-clean}, formatted in the WebDataset format. WebDataset files are essentially tar archives, where each example in the dataset is represented by a pair of files: a WAV audio file and a corresponding JSON metadata file. The JSON file contains the class label and other relevant information for that particular audio sample.

$ tar tvf wds-audio-train-clean-100-000000.tar | head-r--r--r-- bigdata/bigdata 203670 2025-01-14 04:25 5561-39621-0030.flac-r--r--r-- bigdata/bigdata    219 2025-01-14 04:25 5561-39621-0030.json-r--r--r-- bigdata/bigdata 361438 2025-01-14 04:25 5561-39621-0043.flac-r--r--r-- bigdata/bigdata    311 2025-01-14 04:25 5561-39621-0043.json-r--r--r-- bigdata/bigdata  57964 2025-01-14 04:25 5561-39621-0000.flac-r--r--r-- bigdata/bigdata     64 2025-01-14 04:25 5561-39621-0000.json-r--r--r-- bigdata/bigdata 190735 2025-01-14 04:25 5561-39621-0028.flac-r--r--r-- bigdata/bigdata    190 2025-01-14 04:25 5561-39621-0028.json-r--r--r-- bigdata/bigdata  58973 2025-01-14 04:25 5561-39621-0037.flac-r--r--r-- bigdata/bigdata     86 2025-01-14 04:25 5561-39621-0037.json

$ cat 5561-39621-0030.json | jq .{  "speaker": 5561,  "gender": "F",  "trans": "THEN THE GENERAL SENT ME BACK THE LETTER BY AN AIDE DE CAMP INFORMING ME THAT IF I WERE FOUND THE NEXT DAY WITHIN THE CIRCUMSCRIPTION OF HIS COMMAND HE WOULD HAVE ME ARRESTED"}
DOI: 10.5281/zenodo.14641592
title: LibrispeechMaleFemale in WebDataset Format

description: This dataset is the LibriSpeech dataset with the splits {train-clean-100, dev-clean, test-clean}, formatted in the WebDataset format. WebDataset files are essentially tar archives, where each example in the dataset is represented by a pair of files: a WAV audio file and a corresponding JSON metadata file. The JSON file contains the class label and other relevant information for that particular audio sample.

$ tar tvf train-clean-100-000000.tar | head-r--r--r-- bigdata/bigdata 203670 2025-01-14 04:25 5561-39621-0030.flac-r--r--r-- bigdata/bigdata    219 2025-01-14 04:25 5561-39621-0030.json-r--r--r-- bigdata/bigdata 361438 2025-01-14 04:25 5561-39621-0043.flac-r--r--r-- bigdata/bigdata    311 2025-01-14 04:25 5561-39621-0043.json-r--r--r-- bigdata/bigdata  57964 2025-01-14 04:25 5561-39621-0000.flac-r--r--r-- bigdata/bigdata     64 2025-01-14 04:25 5561-39621-0000.json-r--r--r-- bigdata/bigdata 190735 2025-01-14 04:25 5561-39621-0028.flac-r--r--r-- bigdata/bigdata    190 2025-01-14 04:25 5561-39621-0028.json-r--r--r-- bigdata/bigdata  58973 2025-01-14 04:25 5561-39621-0037.flac-r--r--r-- bigdata/bigdata     86 2025-01-14 04:25 5561-39621-0037.json

$ cat 5561-39621-0030.json | jq .{  "speaker": 5561,  "gender": "F",  "trans": "THEN THE GENERAL SENT ME BACK THE LETTER BY AN AIDE DE CAMP INFORMING ME THAT IF I WERE FOUND THE NEXT DAY WITHIN THE CIRCUMSCRIPTION OF HIS COMMAND HE WOULD HAVE ME ARRESTED"}
DOI: 10.5281/zenodo.14716252
title: LibrispeechMaleFemale in WebDataset Format

description: This dataset is the LibriSpeech dataset with the splits {train-clean-100, dev-clean, test-clean}, formatted in the WebDataset format. WebDataset files are essentially tar archives, where each example in the dataset is represented by a pair of files: a WAV audio file and a corresponding JSON metadata file. The JSON file contains the class label and other relevant information for that particular audio sample.

$ tar tvf train-clean-100-000000.tar | head-r--r--r-- bigdata/bigdata 203670 2025-01-14 04:25 5561-39621-0030.flac-r--r--r-- bigdata/bigdata    219 2025-01-14 04:25 5561-39621-0030.json-r--r--r-- bigdata/bigdata 361438 2025-01-14 04:25 5561-39621-0043.flac-r--r--r-- bigdata/bigdata    311 2025-01-14 04:25 5561-39621-0043.json-r--r--r-- bigdata/bigdata  57964 2025-01-14 04:25 5561-39621-0000.flac-r--r--r-- bigdata/bigdata     64 2025-01-14 04:25 5561-39621-0000.json-r--r--r-- bigdata/bigdata 190735 2025-01-14 04:25 5561-39621-0028.flac-r--r--r-- bigdata/bigdata    190 2025-01-14 04:25 5561-39621-0028.json-r--r--r-- bigdata/bigdata  58973 2025-01-14 04:25 5561-39621-0037.flac-r--r--r-- bigdata/bigdata     86 2025-01-14 04:25 5561-39621-0037.json

$ cat 5561-39621-0030.json | jq .{  "speaker": 5561,  "gender": "F",  "trans": "THEN THE GENERAL SENT ME BACK THE LETTER BY AN AIDE DE CAMP INFORMING ME THAT IF I WERE FOUND THE NEXT DAY WITHIN THE CIRCUMSCRIPTION OF HIS COMMAND HE WOULD HAVE ME ARRESTED"}
DOI: 10.15468/dl.4zd7gw
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oxydoras kneri Bleeker, 1862"
 ]
}

 The dataset includes 56 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000119-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4yz44v
title: Occurrence Download

description: A dataset containing 389106 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "Geometry POLYGON ((136.4672 -36.4768, 137.8105 -36.4768, 137.8105 -35.21785, 136.4672 -35.21785, 136.4672 -36.4768))",
 "Year is less than 2026"
 ]
}

 The dataset includes 389106 records from 234 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000096-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qrhrn5
title: Occurrence Download

description: A dataset containing 262 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "TaxonKey is Bidens alba (L.) DC.",
 "Year 1970-2025"
 ]
}

 The dataset includes 262 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000120-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ccvnbr
title: Occurrence Download

description: A dataset containing 169 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (iNaturalist Research-grade Observations, Ictiologia Collection - Instituto Nacional de Pesquisas da Amazônia (INPA))",
 "TaxonKey is Pterodoras granulosus (Valenciennes, 1821)"
 ]
}

 The dataset includes 169 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000121-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28267385
title: Supplementary Tables 1-7 for "Biogeochemical coupling of C/Fe in oil-polluted wetlands associated with iron reduction"

description: <b>Supplementary</b><b> Table 1</b> The identified genes related to Methanogenesis (MG-g), Hydrocarbon Degradation (HD-g), Dissimilatory Iron Reduction (DIR-g), Carbon Terminal Metabolism (CTM-g) and Energy Supply (ES-g) based on KEGG annotation. <b>Supplementary</b><b> Table 2</b> The identified microorganisms preforming Dissimilatory Iron Reduction (DIR-m), Hydrocarbon Degradation (HD-m) and Methanogenesis (MG-m) from top 500 at the genus level. Ab (%) represents the average relative abundance of functional microorganisms in samples of S1#-S44# and D1#-D43#. <b>Supplementary</b><b> Table 3</b> Functional genes significantly positively correlated with Geobacter based on the Spearman correlation (*p &lt; 0.05, **p &lt; 0.01). <b>Supplementary</b><b> Table 4</b> Alpha diversity of microbial communities in each sample. The values of the ACE and Chao indices are proportional to the richness of microbial communities. The values of the Shannon indices reflect the richness and evenness of microbial communities. <b>Supplementary</b><b> Table 5 </b>Taxon of genera and phylum of key nodes of bacteria identified from reference in the microbial co-occurrence network. <b>Supplementary</b><b> Table 6 </b>Proportion of different kinds of functional bacteria in co-occurrence networks. <b>Supplementary</b><b> Table 7 </b>Major topological properties of the microbial co-occurrence network.
DOI: 10.6084/m9.figshare.28267385.v1
title: Supplementary Tables 1-7 for "Biogeochemical coupling of C/Fe in oil-polluted wetlands associated with iron reduction"

description: <b>Supplementary</b><b> Table 1</b> The identified genes related to Methanogenesis (MG-g), Hydrocarbon Degradation (HD-g), Dissimilatory Iron Reduction (DIR-g), Carbon Terminal Metabolism (CTM-g) and Energy Supply (ES-g) based on KEGG annotation. <b>Supplementary</b><b> Table 2</b> The identified microorganisms preforming Dissimilatory Iron Reduction (DIR-m), Hydrocarbon Degradation (HD-m) and Methanogenesis (MG-m) from top 500 at the genus level. Ab (%) represents the average relative abundance of functional microorganisms in samples of S1#-S44# and D1#-D43#. <b>Supplementary</b><b> Table 3</b> Functional genes significantly positively correlated with Geobacter based on the Spearman correlation (*p &lt; 0.05, **p &lt; 0.01). <b>Supplementary</b><b> Table 4</b> Alpha diversity of microbial communities in each sample. The values of the ACE and Chao indices are proportional to the richness of microbial communities. The values of the Shannon indices reflect the richness and evenness of microbial communities. <b>Supplementary</b><b> Table 5 </b>Taxon of genera and phylum of key nodes of bacteria identified from reference in the microbial co-occurrence network. <b>Supplementary</b><b> Table 6 </b>Proportion of different kinds of functional bacteria in co-occurrence networks. <b>Supplementary</b><b> Table 7 </b>Major topological properties of the microbial co-occurrence network.
DOI: 10.15468/dl.696s79
title: Occurrence Download

description: A dataset containing 131 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Taxus wallichiana var. chinensis (Pilg.) Florin"
 ]
}

 The dataset includes 131 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000122-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3rmges
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acanthocleithron chapini Nichols & Griscom, 1917"
 ]
}

 The dataset includes 16 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000124-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/42749
title: Chandra X-ray Observatory ObsId 42749
DOI: 10.15468/dl.4rz28y
title: Occurrence Download

description: A dataset containing 73742 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Mammal collection of National Museum of Nature and Science"
 ]
}

 The dataset includes 73742 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000123-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.