cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6863747.v1
title: Standardizing the evaluation of community-based conservation success (Ecological Applications)

description: Community-based conservation, which strives to simultaneously improve nature conservation and alleviate poverty, must provide biological and socio-economic benefits that are linked through effective resilience mechanisms. To date, few community-based conservation initiatives have published comprehensive assessments that track performance in these elements of success. With 45% of the world’s protected areas in co-management with local communities, standardized measures to effectively evaluate the dual goals of community-based conservation are needed. To address this need, we developed SPECCS, a user-friendly Standardized Protocol for Evaluating Community Conservation Success that incorporates an appraisal of data quality to responsibly assess progress over time or to compare effectiveness among different initiatives (www.calgaryzoo.com/why-we-matter/our-approach). In <strong>Brichieri-Colombi et al. </strong>Standardizing the evaluation of community-based conservation success, <i>Ecological Applications,</i> we illustrate SPECCS’s use by evaluating the Wechiau Community Hippo Sanctuary (WCHS) of northern Ghana 10 and 20 years after its inception. Presented here are additional (raw) data used to evaluate the WCHS. For additional data and more information, please see our published works.
DOI: 10.6084/m9.figshare.6863711
title: Data and R Code, Wainwright_JECOL_2018

description: Data and R code for maximum likelihood model fitting of annual plant population model for coexistence calculations. <br>Accompaniment to:Wainwright CE, HilleRisLambers J, Lai HR, Loy X, Mayfield MM. Distinct responses of niche and fitness differences to water availability underlie variable coexistence outcomes in semi-arid annual plant communities. <i>Journal of Ecology.</i><br>
DOI: 10.6084/m9.figshare.6863744.v1
title: Genomes in the tree of life of Burgess et al. (2016) - part II

description: This directory contains 2000 genomes downloaded from NCBI. There are 3859 genomes in total. The other 1859 genomes can be found in part I. Genome IDs from Hug et al.'s supplementary table 1 were used as queries. <br>Hug et al. 2016: http://dx.doi.org/10.1038/nmicrobiol.2016.48<br>A script of Christopher Brown was used to download the genomes. It is publicly available on GitHub: https://github.com/christophertbrown/bioscripts<br>Christopher Brown and Laura Hug assisted us with the download of this dataset.<br>Hug_taxIDmap.txt shows the key from genome ID to taxon ID.
DOI: 10.6084/m9.figshare.6863744.v3
title: Genomes used to infer a tree of life in Hug et al. (2016) II

description: This directory contains 2000 genomes downloaded from NCBI. There are 3859 genomes in total. The other 1859 genomes can be found in part I. Genome IDs from Hug et al.'s supplementary table 1 were used as queries. <br>Hug et al. 2016: http://dx.doi.org/10.1038/nmicrobiol.2016.48<br>A script of Christopher Brown was used to download the genomes. It is publicly available on GitHub: https://github.com/christophertbrown/bioscripts<br>Christopher Brown and Laura Hug assisted us with the download of this dataset.<br>Hug_taxIDmap.txt shows the key from genome ID to taxon ID.
DOI: 10.6084/m9.figshare.6863711.v1
title: Data and R Code, Wainwright_JECOL_2018

description: Data and R code for maximum likelihood model fitting of annual plant population model for coexistence calculations. <br>Accompaniment to:Wainwright CE, HilleRisLambers J, Lai HR, Loy X, Mayfield MM. Distinct responses of niche and fitness differences to water availability underlie variable coexistence outcomes in semi-arid annual plant communities. <i>Journal of Ecology.</i><br>
DOI: 10.6084/m9.figshare.6863744.v2
title: Genomes in the tree of life of Hug et al. (2016) - part II

description: This directory contains 2000 genomes downloaded from NCBI. There are 3859 genomes in total. The other 1859 genomes can be found in part I. Genome IDs from Hug et al.'s supplementary table 1 were used as queries. <br>Hug et al. 2016: http://dx.doi.org/10.1038/nmicrobiol.2016.48<br>A script of Christopher Brown was used to download the genomes. It is publicly available on GitHub: https://github.com/christophertbrown/bioscripts<br>Christopher Brown and Laura Hug assisted us with the download of this dataset.<br>Hug_taxIDmap.txt shows the key from genome ID to taxon ID.
DOI: 10.6084/m9.figshare.6863708
title: Data used.pdf

description: The data obtained related to the new analytical formulas derived to calculation of Franck-Condon integral (FCI)
DOI: 10.6084/m9.figshare.6863708.v1
title: Data used.pdf

description: The data obtained related to the new analytical formulas derived to calculation of Franck-Condon integral (FCI)
DOI: 10.6084/m9.figshare.6863633
title: NNK and arecoline synergy promotes tumor aggression via EGFR

description: Our raw data set used to reach the conclusions drawn in a manuscript with related metadata and methods, and any additional data required to replicate the reported study findings in their entirety. This means providing the individual data points behind the values presented in the graphs, figures, and tables.
DOI: 10.6084/m9.figshare.6863633.v1
title: NNK and arecoline synergy promotes tumor aggression via EGFR

description: Our raw data set used to reach the conclusions drawn in a manuscript with related metadata and methods, and any additional data required to replicate the reported study findings in their entirety. This means providing the individual data points behind the values presented in the graphs, figures, and tables.
DOI: 10.6084/m9.figshare.6863594
title: Genomes used to infer a tree of life in Hug et al. (2016) - part I

description: This directory contains 1859 genomes downloaded from NCBI. There are 3859 genomes in total. The other 2000 genomes can be found in part II. Genome IDs from Hug et al.'s supplementary table 1 were used as queries. <br>Hug et al. 2016: http://dx.doi.org/10.1038/nmicrobiol.2016.48<br>A script of Christopher Brown was used to download the genomes. It is publicly available on GitHub: https://github.com/christophertbrown/bioscripts<br>Christopher Brown and Laura Hug assisted us with the download of this dataset.<br>Hug_taxIDmap.txt shows the key from genome ID to taxon ID.
DOI: 10.6084/m9.figshare.6863594.v2
title: Genomes used to infer a tree of life in Hug et al. (2016) - part I

description: This directory contains 1859 genomes downloaded from NCBI. There are 3859 genomes in total. The other 2000 genomes can be found in part II. Genome IDs from Hug et al.'s supplementary table 1 were used as queries. <br>Hug et al. 2016: http://dx.doi.org/10.1038/nmicrobiol.2016.48<br>A script of Christopher Brown was used to download the genomes. It is publicly available on GitHub: https://github.com/christophertbrown/bioscripts<br>Christopher Brown and Laura Hug assisted us with the download of this dataset.<br>Hug_taxIDmap.txt shows the key from genome ID to taxon ID.
DOI: 10.6084/m9.figshare.6863594.v1
title: Genomes in the tree of life of Hug et al. (2016) - part I

description: This directory contains 1859 genomes downloaded from NCBI. There are 3859 genomes in total. The other 2000 genomes can be found in part II. Genome IDs from Hug et al.'s supplementary table 1 were used as queries. <br>Hug et al. 2016: http://dx.doi.org/10.1038/nmicrobiol.2016.48<br>A script of Christopher Brown was used to download the genomes. It is publicly available on GitHub: https://github.com/christophertbrown/bioscripts<br>Christopher Brown and Laura Hug assisted us with the download of this dataset.<br>Hug_taxIDmap.txt shows the key from genome ID to taxon ID.
DOI: 10.6084/m9.figshare.6860846
title: ProteomeTools - Prosit - Holdout Set

description: ProteomeTools HCD data as training dataset for machine learning applications. We validated our fragmentation prediction model Prosit on this dataset.
DOI: 10.6084/m9.figshare.6860837
title: Comparison of DNA methylation measured by Illumina 450K and EPIC BeadChips in blood of newborns and 14-year-old children

description: Analysis of DNA methylation helps to understand the effects of environmental exposures as well as the role of epigenetics in human health. Illumina, Inc. recently replaced the HumanMethylation450 BeadChip (450K) with the EPIC BeadChip, which nearly doubles the measured CpG sites to &gt;850,000. Although the new chip uses the same underlying technology, it is important to establish if data between the two platforms are comparable within cohorts and for meta-analyses. DNA methylation was assessed by 450K and EPIC using whole blood from newborn (n = 109) and 14-year-old (n = 86) participants of the Center for the Health Assessment of Mothers and Children of Salinas. The overall per-sample correlations were very high (r &gt;0.99), although many individual CpG sites, especially those with low variance of methylation, had lower correlations (median r = 0.24). There was also a small subset of CpGs with large mean methylation β-value differences between platforms, in both the newborn and 14-year datasets. However, estimates of cell type proportion prediction by 450K and EPIC were highly correlated at both ages. Finally, differentially methylated positions between boys and girls replicated very well by both platforms in newborns and older children. These findings are encouraging for application of combined data from EPIC and 450K platforms for birth cohorts and other population studies. These data in children corroborate recent comparisons of the two BeadChips in adults and in cancer cell lines. However, researchers should be cautious when characterizing individual CpG sites and consider independent methods for validation of significant hits.
DOI: 10.6084/m9.figshare.6860837.v1
title: Comparison of DNA methylation measured by Illumina 450K and EPIC BeadChips in blood of newborns and 14-year-old children

description: Analysis of DNA methylation helps to understand the effects of environmental exposures as well as the role of epigenetics in human health. Illumina, Inc. recently replaced the HumanMethylation450 BeadChip (450K) with the EPIC BeadChip, which nearly doubles the measured CpG sites to &gt;850,000. Although the new chip uses the same underlying technology, it is important to establish if data between the two platforms are comparable within cohorts and for meta-analyses. DNA methylation was assessed by 450K and EPIC using whole blood from newborn (n = 109) and 14-year-old (n = 86) participants of the Center for the Health Assessment of Mothers and Children of Salinas. The overall per-sample correlations were very high (r &gt;0.99), although many individual CpG sites, especially those with low variance of methylation, had lower correlations (median r = 0.24). There was also a small subset of CpGs with large mean methylation β-value differences between platforms, in both the newborn and 14-year datasets. However, estimates of cell type proportion prediction by 450K and EPIC were highly correlated at both ages. Finally, differentially methylated positions between boys and girls replicated very well by both platforms in newborns and older children. These findings are encouraging for application of combined data from EPIC and 450K platforms for birth cohorts and other population studies. These data in children corroborate recent comparisons of the two BeadChips in adults and in cancer cell lines. However, researchers should be cautious when characterizing individual CpG sites and consider independent methods for validation of significant hits.
DOI: 10.6084/m9.figshare.6860846.v1
title: ProteomeTools - Prosit - Holdout Set

description: ProteomeTools HCD data as training dataset for machine learning applications. We validated our fragmentation prediction model Prosit on this dataset.
DOI: 10.6084/m9.figshare.6860804
title: Supplementary Data (On the Geometrically Exact Low Order Modelling of a Flexible Beam, Formulation and Numerical Tests) from On the geometrically exact low-order modelling of a flexible beam: formulation and numerical tests

description: Provision of data points for the results figures of the paper.
DOI: 10.6084/m9.figshare.6860804.v1
title: Supplementary Data (On the Geometrically Exact Low Order Modelling of a Flexible Beam, Formulation and Numerical Tests) from On the geometrically exact low-order modelling of a flexible beam: formulation and numerical tests

description: Provision of data points for the results figures of the paper.
DOI: 10.6084/m9.figshare.6860762
title: Data

description: This is fake data.
DOI: 10.6084/m9.figshare.6860762.v1
title: Data

description: This is fake data.
DOI: 10.6084/m9.figshare.6860753
title: Patagonia_and_Global_datasets.xls

description: Two large-scale databases with contrasting geographic coverage (236 sites in Global drylands and 185 sites in Patagonia, Argentina) to evaluate the relative importance of abiotic (precipitation, temperature maxima, soil sand content) and biotic (NDVI as proxy of annual net primary productivity) factors as drivers of soil organic carbon concentration in drylands at global and regional scales.
DOI: 10.17633/rd.brunel.6860738
title: Accumulated Volume of Data Taken by the MICE Experiment

description: MICE, the international Muon Ionization Cooling Experiment, is a project to design, construct, operate and test a cell of a muon ionisation cooling channel that may be used for a future Muon Collider or Neutrino Factory.<br>The object of the MICE experiment is to take a beam of muons created from protons from the ISIS accelerator hitting a titanium target and to show that it is possible to create a narrow intense beam, using detector techniques from particle physics.The MICE RAW data is the binary output from the principal MICE DAQ system. This spreadsheet records the cumulative volume of RAW data gathered during MICE, listed both by run century and by date. The plots show the accumulation of data with time.Note that the numbers refer to production data (as written to tape); deleted test data and any replication in downstream storage are excluded.This material forms part of the MICE Miscellaneous data, DOI: 10.17633/rd.brunel.5024885 ( <em>Construction/Grid/AccumulatedVolumeOfRawDataTakenByTheMICEExperiment.zip</em> ).
DOI: 10.17633/rd.brunel.6860738.v1
title: Accumulated Volume of Data Taken by the MICE Experiment

description: MICE, the international Muon Ionization Cooling Experiment, is a project to design, construct, operate and test a cell of a muon ionisation cooling channel that may be used for a future Muon Collider or Neutrino Factory.<br>The object of the MICE experiment is to take a beam of muons created from protons from the ISIS accelerator hitting a titanium target and to show that it is possible to create a narrow intense beam, using detector techniques from particle physics.The MICE RAW data is the binary output from the principal MICE DAQ system. This spreadsheet records the cumulative volume of RAW data gathered during MICE, listed both by run century and by date. The plots show the accumulation of data with time.Note that the numbers refer to production data (as written to tape); deleted test data and any replication in downstream storage are excluded.This material forms part of the MICE Miscellaneous data, DOI: 10.17633/rd.brunel.5024885 ( <em>Construction/Grid/AccumulatedVolumeOfRawDataTakenByTheMICEExperiment.zip</em> ).
DOI: 10.6084/m9.figshare.6860705
title: Structure of Trypanosoma Brucei 20S Editosome: theoretical model

description: Structural model of <i>Trypanosoma Brucei</i> 20S Editosome as of July 2018.<br><br>The model was generated using PyRy3D software in november 2016.
DOI: 10.6084/m9.figshare.6860699
title: Dataset: Chronotype and Academic Performance by Time Of Day

description: This dataset contains the Morningness-Eveningness Quotient scores and Grade Point Averages (by time of day of class) for 402 traditional first-time freshmen (aged 17-19 years) collected during the Fall 2018 semester at Oral Roberts University. We also provide the demographic data of gender, college, major, and US citizenship status. The protocol for data collection and storage was approved by Oral Roberts University’s Institutional Review Board.<br>
DOI: 10.6084/m9.figshare.6860705.v3
title: Structure of Trypanosoma Brucei 20S Editosome: theoretical model

description: Structural model of <i>Trypanosoma Brucei</i> 20S Editosome as of July 2018.<br><br>The model was generated using PyRy3D software in november 2016.
DOI: 10.6084/m9.figshare.6860705.v2
title: Structure of Trypanosoma Brucei 20S Editosome

description: Structural model of <i>Trypanosoma Brucei</i> 20S Editosome as of July 2018.<br><br>The model was generated using PyRy3D software in november 2016.
DOI: 10.6084/m9.figshare.6860699.v1
title: Chronotype and Academic Performance by Time Of Day

description: This dataset contains the Morningness-Eveningness Quotient scores and Grade Point Averages (by time of day of class) for 402 traditional first-time freshmen (aged 17-19 years) collected during the Fall 2018 semester at Oral Roberts University. We also provide the demographic data of gender, college, major, and US citizenship status. The protocol for data collection and storage was approved by Oral Roberts University’s Institutional Review Board.<br>
DOI: 10.6084/m9.figshare.6860576
title: Academic Recruitment Fields

description: Academic recruitment fields used by the Italian Ministry of Education, Universities and Research (MIUR), which coordinates the National Scientific Qualification (NSQ).
DOI: 10.6084/m9.figshare.6860555
title: Dose–response effect of the lercanidipine/enalapril combination: a pooled analysis

description: <b>Objective:</b> The dose–effect relationship of fixed-dose combinations of anti-hypertensive drugs has been only poorly explored. This pooled analysis investigates the dose–response relationship of fixed-dose lercanidipine + enalapril in patients with mild-to-moderate hypertension. <b>Research design and methods:</b> This was an individual patient data analysis of four randomized studies (<i>n</i> = 2340). <b>Main outcome measures:</b> The primary efficacy variable was the change from baseline in sitting diastolic blood pressure (SDBP). Secondary variables were change from baseline in sitting systolic BP (SSBP), proportion of responder patients, and safety. <b>Results:</b> All fixed-dose combinations were superior to placebo in the reduction of SDBP. The greatest effect was observed with the market-available combination lercanidipine 20 mg/enalapril 20 mg (−15.3 mmHg vs. baseline; <i>p</i> p p <b>Conclusion:</b> This pooled analysis of four randomized studies shows evidence of a dose–response effect in BP reduction with different fixed combinations of lercanidipine + enalapril. To our knowledge, this is the first analysis investigating the dose–response effect of a specific fixed-dose combination of anti-hypertensive agents. Further studies on this intriguing topic are however necessary.
DOI: 10.6084/m9.figshare.6860567
title: Self-worth_Study_2

description: the dataset contains measurements of deontological and utilitarian inclinations obtained with Conway and Gawronski (2013) method in three groups: (1) control; (2) competition as a contingency of self-worth primed and (3) virtue as a contingency of self-worth primed<br>
DOI: 10.6084/m9.figshare.6860555.v1
title: Dose–response effect of the lercanidipine/enalapril combination: a pooled analysis

description: <b>Objective:</b> The dose–effect relationship of fixed-dose combinations of anti-hypertensive drugs has been only poorly explored. This pooled analysis investigates the dose–response relationship of fixed-dose lercanidipine + enalapril in patients with mild-to-moderate hypertension. <b>Research design and methods:</b> This was an individual patient data analysis of four randomized studies (<i>n</i> = 2340). <b>Main outcome measures:</b> The primary efficacy variable was the change from baseline in sitting diastolic blood pressure (SDBP). Secondary variables were change from baseline in sitting systolic BP (SSBP), proportion of responder patients, and safety. <b>Results:</b> All fixed-dose combinations were superior to placebo in the reduction of SDBP. The greatest effect was observed with the market-available combination lercanidipine 20 mg/enalapril 20 mg (−15.3 mmHg vs. baseline; <i>p</i> p p <b>Conclusion:</b> This pooled analysis of four randomized studies shows evidence of a dose–response effect in BP reduction with different fixed combinations of lercanidipine + enalapril. To our knowledge, this is the first analysis investigating the dose–response effect of a specific fixed-dose combination of anti-hypertensive agents. Further studies on this intriguing topic are however necessary.
DOI: 10.6084/m9.figshare.6860567.v1
title: Self-worth_Study_2

description: the dataset contains measurements of deontological and utilitarian inclinations obtained with Conway and Gawronski (2013) method in three groups: (1) control; (2) competition as a contingency of self-worth primed and (3) virtue as a contingency of self-worth primed<br>
DOI: 10.6084/m9.figshare.6860531
title: self-worth_Study_1.xlsx

description: the dataset containes measurements of: deontological and utilitarian inclinations obtained with Conway & Gawronski (2013) method, CRT and empathic care subscale from IRI <br>
DOI: 10.6084/m9.figshare.6860531.v1
title: self-worth_Study_1.xlsx

description: the dataset containes measurements of: deontological and utilitarian inclinations obtained with Conway & Gawronski (2013) method, CRT and empathic care subscale from IRI <br>
DOI: 10.6084/m9.figshare.6860387
title: High throughput screening, docking, and molecular dynamics studies to identify potential inhibitors of human calcium/calmodulin-dependent protein kinase IV

description: Calcium/calmodulin-dependent protein kinase IV (CAMKIV) is associated with many diseases including cancer and neurodegenerative disorders and thus being considered as a potential drug target. Here, we have employed the knowledge of three-dimensional structure of CAMKIV to identify new inhibitors for possible therapeutic intervention. We have employed virtual high throughput screening of 12,500 natural compounds of Zinc database to screen the best possible inhibitors of CAMKIV. Subsequently, 40 compounds which showed significant docking scores (−11.6 to −10.0 kcal/mol) were selected and further filtered through Lipinski rule and drug likeness parameter to get best inhibitors of CAMKIV. Docking results are indicating that ligands are binding to the hydrophobic cavity of the kinase domain of CAMKIV and forming a significant number of non-covalent interactions. Four compounds, ZINC02098378, ZINC12866674, ZINC04293413, and ZINC13403020, showing excellent binding affinity and drug likeness were subjected to molecular dynamics simulation to evaluate their mechanism of interaction and stability of protein-ligand complex. Our observations clearly suggesting that these selected ligands may be further employed for therapeutic intervention to address CAMKIV associated diseases. Communicated by Ramaswamy H. Sarma