cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.11222093
title: OMAP-19 Organ Mapping Antibody Panel (OMAP) for Multiplexed Antibody-Based Imaging of Human Tonsil with IBEX

description: Representative dataset acquired using the Iterative Bleaching Extends multi-pleXity (IBEX) imaging method described in:



“IBEX: A versatile multi-plex optical imaging approach for deep phenotyping and spatial analysis of cells in complex tissues“, A. Radtke et al., Proc. Natl. Acad. Sci. USA, 2020, doi.org/10.1073/pnas.2018488117.

"IBEX: an iterative immunolabeling and chemical bleaching method for high-content imaging of diverse tissues", A. J. Radtke, et al., Nat Protoc, 2022, doi.org/10.1038/s41596-021-00644-9.


This dataset accompanies the Organ Mapping Antibody Panel (OMAP) effort led by the Human BioMolecular Atlas Program detailed here.

OMAP-19 was designed for IBEX imaging of human FFPE tonsil samples sectioned onto glass slides. The panel consists of 6 cycles of 20 primary antibodies, 5 secondary antibodies, and the nuclear label Hoechst for image alignment and nuclear segmentation. This OMAP provides a spatial context for 10 anatomical structures and at least 16 cell types present in the ASCT+B tonsil table. OMAP-19 was designed to examine myeloid subsets (CD11b, CD11c, CD14, CD15, HLA-DR) and angiogenesis (VEGF-A and VEGF-C) in human ovarian cancer biopsies. The human tonsil was used as a positive control for antibody validation and panel development. Antigen retrieval was performed using a pressure cooker (Borg Decloaker BD1000, 110°C for 15 minutes) and a tris-based buffer (pH 9.5). Several custom antibodies were created using commercial labeling kits as indicated in the associated RRID entries for these antibodies. More details on the antigen retrieval protocol and step-by-step application of antibodies can be found on the IBEX Imaging Community knowlege-base (current version) and on Zenodo (last official version).

Images were acquired using an inverted Leica TCS SP8 X confocal microscope equipped with a 40X objective (NA 1.3), 4 HyD and 1 PMT detectors, a white light laser that produces a continuous spectral output between 470 and 670 nm as well as a 405 nm laser. All images were captured at an 16-bit depth, with a line average of 3, and 1024x1024 format with the following pixel dimensions: x (0.379 µm), y (0.379 µm), and z (1 µm). Images were tiled and merged using the LAS X Navigator software.

Image supplied as a .ims Imaris Format file and can be opened with the free Imaris Viewer software or ImageJ/Fiji. Image channel and antibody meta-data supplied as an xlsx file.
DOI: 10.15468/dl.b2tu97
title: Occurrence Download

description: A dataset containing 10559 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Tithonia diversifolia (Hemsl.) A.Gray)"
 ]
}

 The dataset includes 10559 records from 399 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031756-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qtx7rp
title: Occurrence Download

description: A dataset containing 304 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cichla temensis Humboldt, 1821)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 304 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031757-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tpe3qm
title: Occurrence Download

description: A dataset containing 1231 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Opuntia sulphurea G.Don ex Loudon)"
 ]
}

 The dataset includes 1231 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031758-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hr7au7
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plecotus sardus Mucedda, Kiefer, Pidinchedda & Veith, 2002",
 "BasisOfRecord is one of (Human Observation, Observation)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "Country is one of (Finland, Ireland, Sweden, Cyprus, Portugal, Netherlands, France, Bulgaria, Romania, Spain, Poland, Czechia, Malta, United Kingdom of Great Britain and Northern Ireland, Austria, Croatia, Slovenia, Slovakia, Germany, Denmark, Italy, Belgium, Gibraltar, Lithuania, Greece, Luxembourg, Latvia, Estonia, Hungary)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031759-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.exd3rz
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bracon cajani Muesebeck, 1955)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031761-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yda8q3
title: Occurrence Download

description: A dataset containing 4025 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Tithonia rotundifolia (Mill.) S.F.Blake)"
 ]
}

 The dataset includes 4025 records from 214 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031762-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/8489278
title: Public Opinion Russia Ukraine War (Updated Daily)
DOI: 10.15468/dl.zrw7gj
title: Occurrence Download

description: A dataset containing 58031 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Colección nacional de zoología"
 ]
}

 The dataset includes 58031 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031695-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.355s74
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bombina pachypus (Bonaparte, 1838)",
 "BasisOfRecord is one of (Human Observation, Observation)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "Country is one of (Finland, Ireland, Sweden, Cyprus, Portugal, Netherlands, France, Bulgaria, Romania, Spain, Poland, Czechia, Malta, United Kingdom of Great Britain and Northern Ireland, Austria, Croatia, Slovenia, Slovakia, Germany, Denmark, Italy, Belgium, Gibraltar, Lithuania, Greece, Luxembourg, Latvia, Estonia, Hungary)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031764-240506114902167/datasets/export for details.
DOI: 10.15468/dl.qg9yke
title: Occurrence Download

description: A dataset containing 4458 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Opuntia tomentosa Salm-Dyck)"
 ]
}

 The dataset includes 4458 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031763-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25883587
title: eQTL_TWAS_data_Nebraska2020

description: This data can be used to run eQTL analysis or TWAS. Contains data for 693 individualscounts.NE2020.693.filtered.txt: TPM data used in TWAS<br>
DOI: 10.15468/dl.h4m3aa
title: Occurrence Download

description: A dataset containing 1702 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cichla ocellaris Bloch & Schneider, 1801)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1702 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031765-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4hwgag
title: Occurrence Download

description: A dataset containing 1558 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Pomatiopsis lapidaria (Say, 1817)"
 ]
}

 The dataset includes 1558 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031767-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z4h3hu
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bracon variegator Spinola, 1808)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 34 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031769-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v9s4zc
title: Occurrence Download

description: A dataset containing 4031 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Tithonia tubaeformis (Jacq.) Cass.)"
 ]
}

 The dataset includes 4031 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031770-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wassvx
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Podarcis raffoneae (Mertens, 1952)",
 "BasisOfRecord is one of (Human Observation, Observation)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "Country is one of (Finland, Ireland, Sweden, Cyprus, Portugal, Netherlands, France, Bulgaria, Romania, Spain, Poland, Czechia, Malta, United Kingdom of Great Britain and Northern Ireland, Austria, Croatia, Slovenia, Slovakia, Germany, Denmark, Italy, Belgium, Gibraltar, Lithuania, Greece, Luxembourg, Latvia, Estonia, Hungary)"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031771-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mey9nb
title: Occurrence Download

description: A dataset containing 12426 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Ornithogalum nutans L.)"
 ]
}

 The dataset includes 12426 records from 276 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031772-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wwcspn
title: Occurrence Download

description: A dataset containing 672 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Haliotis cracherodii Leach, 1814"
 ]
}

 The dataset includes 672 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031773-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hh2d5k
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (\"Convolvulus dahuricus × dubius \", Aa achalensis Schltr., Aa argyrolepis Rchb.f.)"
 ]
}

 The dataset includes 32 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031774-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bsn4jq
title: Occurrence Download

description: A dataset containing 424 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cichla monoculus Agassiz, 1831)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 424 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031775-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m24zj7
title: Occurrence Download

description: A dataset containing 223 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Tithonia tubiformis (Jacq.) Cass.)"
 ]
}

 The dataset includes 223 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031777-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.py3c22
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Diachasmimorpha tryoni (Cameron, 1911))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 92 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031778-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.83jb59
title: Occurrence Download

description: A dataset containing 1764 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Acacia cuneifolia Maslin, Acacia cupularis Domin, Acacia curranii Maiden)"
 ]
}

 The dataset includes 1764 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031781-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jzqwzw
title: Occurrence Download

description: A dataset containing 146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cichla pleiozona Kullander & Ferreira, 2006)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 146 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031782-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cabsjm
title: Occurrence Download

description: A dataset containing 55823 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Necrosyrtes monachus (Temminck, 1823)"
 ]
}

 The dataset includes 55823 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031705-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mbgd3d
title: Occurrence Download

description: A dataset containing 10981 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tulipa gesneriana L."
 ]
}

 The dataset includes 10981 records from 237 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031784-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2c3whz
title: Occurrence Download

description: A dataset containing 12572 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is 成龍溼地鳥類生態紀錄"
 ]
}

 The dataset includes 12572 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0197783-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dx65gm
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Herbier de Strasbourg",
 "Country is Andorra"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196014-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xbs8ib
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Ichthyological Collection of the Museu Oceanográfico D. Carlos I",
 "Issue is Recorded date unlikely"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006956-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eriuwm
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hippeastrum rutilum (Ker Gawl.) Herb."
 ]
}

 The dataset includes 24 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035514-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.my54hd
title: Occurrence Download

description: A dataset containing 31916 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Citharichthys sordidus (Girard, 1854)"
 ]
}

 The dataset includes 31916 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034976-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nesahx
title: Occurrence Download

description: A dataset containing 204 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "TaxonKey is Trachycephalus jordani (Stejneger & Test, 1891)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 204 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006957-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tdlfa8
title: Occurrence Download

description: A dataset containing 4909 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Leptinotarsa decemlineata (Say, 1824)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4909 records from 118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004707-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eydq5e
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acacia longifolia var. prostrata C.Moore"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006958-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g4zhcn
title: Occurrence Download

description: A dataset containing 6022 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kalotermitidae"
 ]
}

 The dataset includes 6022 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052374-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ggyufm
title: Occurrence Download

description: A dataset containing 7089897 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phasianidae"
 ]
}

 The dataset includes 7089897 records from 1584 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057241-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rspm9q
title: Occurrence Download

description: A dataset containing 459 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epinephelus cyanopodus (Richardson, 1846)"
 ]
}

 The dataset includes 459 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0110797-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zg5p2w
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Occurrence evidence",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Human Observation"
 ]
 },
 "Country is Greece",
 "TaxonKey is Fagus ×moesiaca (K.Malý) Czeczott"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0366493-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5b2sr8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Oligoryzomys victus (Thomas, 1898))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078085-230224095556074/datasets/export for details.
DOI: 10.25549/pcra-c14-240553
title: Annual women's convention, Texas Northeast, COGIC, Dallas, 2003, program (copy 2)

description: [description english/roman)] Annual women's convention program, "Virtuous women: standing firm in a compromising world", Saintsville Sanctuary Church of God in Christ, Texas Northeast, Dallas, Texas, 2003 April 23-25. Copy 2.
DOI: 10.15468/dl.ee5z42
title: Occurrence Download

description: A dataset containing 313119 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Freshwater benthic invertebrates ecological collection NTNU University Museum"
 ]
}

 The dataset includes 313119 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0176466-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.