cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7267/3484zn94s
title: Data for Investigating Protein-lipid-membrane Interactions in Plant Cells using Bimolecular Fluorescence Complementation

description: Datasets generated during a dissertation that has the goal of studying the distribution of specific lipids and membrane proteins of the external and internal membranes of plant cells, in the context of the roles that those lipids and proteins may play in microbe-plant interactions.
description: All microscopy images were obtained using a ZEISS LSM 780 NLO confocal microscope system equipped with a 458-nm argon laser for CFP (emission wavelength 560-509 nm), a 514-nm argon laser for YFP/Venus (emission wavelength 518-553 nm), and a 561-nm Diode Pumped Solid State (DPSS) laser for tagRFP and FM4-64 (emission wavelength 562-640 nm). For time-lapse imaging, 100 consecutive frames without time intervals (combined speed of about 0.78 fps) were acquired sequentially. The kymograph plots were generated using ImageJ (Version 1.51n, NIH) and the plug-in “KymographBuilder” with a 30 µm segmented line for this measurement.
description: All microscopy images were processed using the Zeiss ZEN2 (Blue edition) program. Maximal intensity projection(MIP) in 3D module was chosen to generate a comprehensive view for Z-axis scanning images.
DOI: 10.17909/t9-wx1n-aw08
title: Data Products From TESS Data Alerts ("TESS-DATA-ALERTS")

description: The TESS mission successfully launched on 18 April 2018 and began science operations on 25 July 2018. Observations of science Sector 1 were performed from 25 July to 22 August, during which pixel data from nearly 16,000 objects were collected at two-minute cadence. These data were sent to the Science Processing Operations Center (SPOC) at NASA Ames for calibration, reduction, cotrending, and transit detection. The potential planet signatures, in the form of Threshold Crossing Events (TCEs), were reviewed by the TESS Science Office to identify targets for imaging and spectroscopic follow-up. A total of 44 high-quality planet candidates in Sector 1 were initially selected from the two-minute cadence data for follow-up observations by the TESS Follow-Up Program (TFOP). Additional deliveries of alerts are provided as more Sectors and multi-Sector searches are conducted by the team.
DOI: 10.5281/zenodo.1438558
title: Dwd European Weather

description: opendata.dwd.de - OpenData by Deutscher Wetter Dienst

Conditions: https://www.dwd.de/EN/service/copyright/copyright_node.html

dates and times are UTC.
DOI: 10.7267/vq27zt874
title: Snowpack Contributions and Temperature Characterization of Landfalling Atmospheric Rivers in the Western Cordillera of the United States

description: This study utilized long-term daily precipitation and snow-water equivalent (SWE) data derived from the Natural Resources Conservation Service’s Snow Telemetry Network. All existing SNOTEL sites in the Olympic, Coast and Cascade ranges in Washington (n = 66) and Oregon (n = 52) and in the California Sierra Nevada (n = 28) with data from water year 1984 to water year 2016 were included in this analysis. The Topography Weather data from Oyler et al. (2015) were used in this analysis due to systemic artifacts in the raw SNOTEL data. Average daily temperatures were computed as the mean of daily minimum and maximum temperatures. Atmospheric river data were obtained from Jonathan Rutz’s “AR catalogs” and identified by a combination of feature length and integrated water vapor flux transport thresholds (IVT250) as described in Rutz et al. (2014). The Modern-Era Retrospective Analysis for Research and Applications (MERRA) data set was used for both its spatial resolution (0.5˚) and temporal coverage (from 1980–2017). Data spanning 38–49˚N and 116.25–125˚W were extracted for this study. Keywords: Atmospheric river; Hydroclimatology; Snowpack; West Coast; Extreme snowfall;
DOI: 10.17632/824949cm92.1
title: Data for: Examining the Effect of Combat Excitement & Diminished Civilian Solidarity on Life Satisfaction for American Veterans

description: The attached data is the result of our factor analysis.
DOI: 10.3886/e104880v1
title: Transmission of Paternal Ex-POW Trauma
DOI: 10.5281/zenodo.1438556
title: Heart Failure eQTLs companion to "Pathologic gene network rewiring implicates PPP1R3A as a central cardioprotective factor in pressure overload heart failure"

description: These are the results of a QTL analysis companion to "Pathologic gene network rewiring implicates PPP1R3A as a central cardioprotective factor in pressure overload heart failure". We performed RNA expression measurements and obtained genotype information in genome-wide markers for 313 patients (177 failing hearts , 136 donor, non-failing [control]  hearts) using Affymetrix expression and Affymetrix Human 6.0 respectively.<strong> </strong>Prior to eQTL discovery, we used PEER to find hidden covariates that could confound signals in our data as well as filtering any genotypes with major allele frequencies less than 5%. To test associations between gene expression in each cohort separately, we used QTLTools with an additive model accounting for gender, age, sample site, and the PEER factors as covariates. We corrected for eQTL multiple association testing using a 10000 permutations per locus in a 2 megabase window and a false discovery rate cutoff of 5%. To select the number of PEER factors, we performed the full analysis multiple times from 1 to 15 PEER factors and observed a saturation of new QTLs being discovered when using 10 factors.

Four files are provided, two for each cohort (cases and controls):

- peer_[cases|controls]_nominal.txt: Nominal associations with a p-value threshold of 0.001

- peer_[cases|controls]_permutations_all.significant.txt:  All significant associations detected after the QTLtools permutation test.

The column names are those from QTLtools, in order:

<br>
1. The phenotype ID<br>
2. The chromosome ID of the phenotype<br>
3. The start position of the phenotype<br>
4. The end position of the phenotype<br>
5. The strand orientation of the phenotype<br>
6. The total number of variants tested in cis<br>
7. The distance between the phenotype and the tested variant (accounting for strand orientation)<br>
8. The ID of the tested variant ( in Affy 6.0 SNP ids)<br>
9. The chromosome ID of the variant<br>
10. The start position of the variant<br>
11. The end position of the variant<br>
12. The nominal P-value of association between the variant and the phenotype<br>
13. The corresponding regression slope<br>
14. A binary flag equal to 1 is the variant is the top variant in cis
DOI: 10.17632/s5xtzjwmk2.1
title: Data for: Multiple Mineralization Events in the Zacatecas Ag-Pb-Zn-Cu-Au District, and Their Relationship to the Tectonomagmatic Evolution of the Mesa Central, Mexico

description: Appendix
DOI: 10.5281/zenodo.1438557
title: Heart Failure Eqtls Companion To "Pathologic Gene Network Rewiring Implicates Ppp1R3A As A Central Cardioprotective Factor In Pressure Overload Heart Failure"

description: These are the results of a QTL analysis companion to "Pathologic gene network rewiring implicates PPP1R3A as a central cardioprotective factor in pressure overload heart failure". We performed RNA expression measurements and obtained genotype information in genome-wide markers for 313 patients (177 failing hearts , 136 donor, non-failing [control]  hearts) using Affymetrix expression and Affymetrix Human 6.0 respectively.<strong> </strong>Prior to eQTL discovery, we used PEER to find hidden covariates that could confound signals in our data as well as filtering any genotypes with major allele frequencies less than 5%. To test associations between gene expression in each cohort separately, we used QTLTools with an additive model accounting for gender, age, sample site, and the PEER factors as covariates. We corrected for eQTL multiple association testing using a 10000 permutations per locus in a 2 megabase window and a false discovery rate cutoff of 5%. To select the number of PEER factors, we performed the full analysis multiple times from 1 to 15 PEER factors and observed a saturation of new QTLs being discovered when using 10 factors.

Four files are provided, two for each cohort (cases and controls):

- peer_[cases|controls]_all.txt: All associations detected.

- peer_[cases|controls]_permutations_all.significant.txt:  All significant associations detected after the QTLtools permutation test.

The column names are those from QTLtools, in order:

<br>
1. The phenotype ID<br>
2. The chromosome ID of the phenotype<br>
3. The start position of the phenotype<br>
4. The end position of the phenotype<br>
5. The strand orientation of the phenotype<br>
6. The total number of variants tested in cis<br>
7. The distance between the phenotype and the tested variant (accounting for strand orientation)<br>
8. The ID of the tested variant ( in Affy 6.0 SNP ids)<br>
9. The chromosome ID of the variant<br>
10. The start position of the variant<br>
11. The end position of the variant<br>
12. The nominal P-value of association between the variant and the phenotype<br>
13. The corresponding regression slope<br>
14. A binary flag equal to 1 is the variant is the top variant in cis
DOI: 10.17632/y3rskt5rnc.1
title: Data for: Multiple Mineralization Events in the Zacatecas Ag-Pb-Zn-Cu-Au District, and Their Relationship to the Tectonomagmatic Evolution of the Mesa Central, Mexico

description: Description of analytical methods and results of electron microprobe analyses, wole-rock geochemistry, 40Ar/39Ar, U-Pb, and locations and descriptions of samples analyzed for geochemistry and geochronology
DOI: 10.5281/zenodo.1336745
title: Everyday Risks And Access To Water And Sanitation In Lilongwe Urban And Peri-Urban Areas

description: The household survey INHAbIT Cities - UNHIDE (Investigating Natural, Historical and Institutional Transformations in Cities  and Uncovering Hidden Dynamics in Slum Environments) focuses on urban risks and sanitation in Lilongwe. The aim was to assess access to basic services and risks perception of urban dwellers living in areas characterised by different conditions of access to water and sanitation and other basic services. Lilongwe was a small town of less than 20,000 inhabitants in 1966 and only started growing after it became the capital in 1975. Its population has reached approximately 1 million inhabitants, living in 58 administrative units, called areas. Infrastructures and service provision is concentrated in the central areas – where parliament, ministries, government offices, embassies, hotels and the commercial area were located -  while low income areas suffer the most from infrastructure and basic services deficits. To illustrate, while some areas access water through in-house connections, others are served through water kiosks, characterised (in some areas) by high rates of discontinuity. Similarly, everyday risks are unevenly distributed across urban spaces: as shown in the survey perception of risks varies drastically from neighbourhood to neighbourhood and depending on the quality and availability of services provided. Data for this survey were collected between February and April 2015 by a team of local researchers, who administered the questionnaire in local language.

Publications linked to this survey are:

Rusca M., Alda Vidal C., Hordijk M., Kral N., (2017) Bathing without water, and other stories of everyday hygiene practices and risk perception in urban low-income areas: the case of Lilongwe, Malawi, Environment and Urbanisation Vol 29, Issue 2, pp. 533 – 550. 

Tiwale S., Rusca M<strong>.</strong>, Zwarteveen M., The power of pipes: mapping urban water inequities through the material properties of networked water infrastructures. The case of Lilongwe, Malawi, Water Alternatives, Water Alternatives 11(2): 314-335.

Rusca M. (2018): Visualising urban inequalities: the ethics of videography and documentary filmmaking in water research, <em>Wires Water</em>, https://doi.org/10.1002/wat2.1292
DOI: 10.5281/zenodo.1336746
title: Everyday Risks And Access To Water And Sanitation In Lilongwe Urban And Peri-Urban Areas

description: The household survey INHAbIT Cities - UNHIDE (Investigating Natural, Historical and Institutional Transformations in Cities  and Uncovering Hidden Dynamics in Slum Environments) focuses on urban risks and sanitation in Lilongwe. The aim was to assess access to basic services and risks perception of urban dwellers living in areas characterised by different conditions of access to water and sanitation and other basic services. Lilongwe was a small town of less than 20,000 inhabitants in 1966 and only started growing after it became the capital in 1975. Its population has reached approximately 1 million inhabitants, living in 58 administrative units, called areas. Infrastructures and service provision is concentrated in the central areas – where parliament, ministries, government offices, embassies, hotels and the commercial area were located -  while low income areas suffer the most from infrastructure and basic services deficits. To illustrate, while some areas access water through in-house connections, others are served through water kiosks, characterised (in some areas) by high rates of discontinuity. Similarly, everyday risks are unevenly distributed across urban spaces: as shown in the survey perception of risks varies drastically from neighbourhood to neighbourhood and depending on the quality and availability of services provided. Data for this survey were collected between February and April 2015 by a team of local researchers, who administered the questionnaire in local language.

Publications linked to this survey are:

Rusca M., Alda Vidal C., Hordijk M., Kral N., (2017) Bathing without water, and other stories of everyday hygiene practices and risk perception in urban low-income areas: the case of Lilongwe, Malawi, Environment and Urbanisation Vol 29, Issue 2, pp. 533 – 550. 

Tiwale S., Rusca M<strong>.</strong>, Zwarteveen M., The power of pipes: mapping urban water inequities through the material properties of networked water infrastructures. The case of Lilongwe, Malawi, Water Alternatives, Water Alternatives 11(2): 314-335.

Rusca M. (2018): Visualising urban inequalities: the ethics of videography and documentary filmmaking in water research, <em>Wires Water</em>, https://doi.org/10.1002/wat2.1292
DOI: 10.7910/dvn/q6mnvy/q0lpz0
title: petitions.xlsx
DOI: 10.17632/9z8tppj6pn.1
title: Data for: DFT study of five-membered ring PAHs

description: Supplementary material is provided in support of wavelength and intensity of the bands that are studied in this article.
DOI: 10.17632/fr3s5bw395.1
title: Data for: Plant community ecology and climate on a volcanic landscape during the Early Eocene Climatic Optimum: McAbee fossil beds, British Columbia, Canada

description: The data provided here is for a comprehensive study of two stratigraphically discrete horizons within the early Eocene lake sediments of the McAbee fossil beds, British Columbia, Canada. Prior work had created a detailed site lithostratigraphy that allowed sampling laterally to be constrained within two individual coeval sedimentary layers, each representing 100-1000 years of forest history and separated by millennia. For this study, plant fossils - principally leaves and other macroplant remains, but also including fossil pollen and spores - were collected using a census protocol where all fossils sufficiently preserved to allow placement into morphotypes - species like taxonomic entities - were counted and measured. These collections allow for a geological snap-shot of ecological time to be assessed, to compare the forest community composition and local climate to be contrasted and compared at two discrete times in the paleohistory the McAbee paleolake, in contrast to prior studies at this fossil site where fossils were collected outside of a site lithostratigraphy. The age of the McAbee fossil beds places them as during the Early Eocene Climatic Optimum. The data includes: 1) a list of all fossil leaves and other plant organs included in a study of the paleoecology and paleoclimate reconstruction of the early Eocene McAbee fossil beds; 2) illustrations and descriptions of all plant fossil morphotypes; 3) all measurements used to reconstruct paleoclimate using leaf physiognomy, applying a new ensemble approach that combined a range of proxies including leaf margin analysis, CLAMP, DiLP (digital leaf physiognomy), and leaf area analysis, further analyzed using a Monte Carlo simulation to arrive at the ensemble or consensus estimate of mean annual temperature, mean annual precipitation and other climate variables; 4) counts of all plant macroflora and microflora taxa (macroplant morphotypes and palynomorphs); 5) measurements and results of measuring leaf dimensions to calculate leaf mass per area, a proxy for leaf longevity (i.e., whether broadleaf dicots were seasonally deciduous or evergreen).
DOI: 10.5281/zenodo.1439205
title: Horizon 2020 Er4Stem Workshop Data Year 1-3 Bulgaria

description: This dataset was collected as part of the Educational Robotics for STEM (ER4STEM) project, funded by the European Commission’s Horizon 2020 programme, grant agreement No. 665792. The dataset includes quantitative and qualitative data collected over 3 years of robotics workshops held in schools in Bulgaria. Only data with informed consent to be shared via an open access repository is included. Only anonymised data is included and some data is excluded to protect vulnerable participants.
DOI: 10.5281/zenodo.1439206
title: Horizon 2020 Er4Stem Workshop Data Year 1-3 Bulgaria

description: This dataset was collected as part of the Educational Robotics for STEM (ER4STEM) project, funded by the European Commission’s Horizon 2020 programme, grant agreement No. 665792. The dataset includes quantitative and qualitative data collected over 3 years of robotics workshops held in schools in Bulgaria. Only data with informed consent to be shared via an open access repository is included. Only anonymised data is included and some data is excluded to protect vulnerable participants.
DOI: 10.5281/zenodo.1441061
title: Data archive for  'Developmental history, energetic state and choice impulsivity in European starlings, Sturnus vulgaris'

description: Data and code for Dunn et al. 'Developmental history, energetic state and choice impulsivity in European starlings, Sturnus vulgaris'

 

The r script allows you to carry out all the analyses reported in the paper. Data from the experiment reported in the paper are 'databybird.csv'.

In the paper, we also compare the findings of the present experiment with findings from a study of risk preference in the same birds (Andrews et al. 2018), and two earlier studies of impulsivity in different birds (Bateson et al. 2015, Nettle et al. 2015) . For convenience, we have included the relevant data from those earlier studies here too, though those data are all already published in association with the primary paper on those experiments.

This version has a revised R script which tweaked some of the analyses in response to peer review.
DOI: 10.5281/zenodo.1441062
title: Data Archive For  'Developmental History, Energetic State And Choice Impulsivity In European Starlings, Sturnus Vulgaris'

description: Data and code for Dunn et al. 'Developmental history, energetic state and choice impulsivity in European starlings, Sturnus vulgaris'

 

The r script allows you to carry out all the analyses reported in the paper. Data from the experiment reported in the paper are 'databybird.csv'.

In the paper, we also compare the findings of the present experiment with findings from a study of risk preference in the same birds (Andrews et al. 2018), and two earlier studies of impulsivity in different birds (Bateson et al. 2015, Nettle et al. 2015) . For convenience, we have included the relevant data from those earlier studies here too, though those data are all already published in association with the primary paper on those experiments.
DOI: 10.5523/bris.1jrcyfdh5t0qq23mxc98vn4mnd
title: Seeing Regulation Differently

description: This project was part of Productive Margins: Regulating for Engagement Programme. Starting later than other projects, 'Seeing regulation differently' was a cross-programme project, exploring how regulation is seen and talked about by community partners and community members.
DOI: 10.5523/bris.3fbemugsutg492cm4plms486t0
title: Women and data futures

description: This project was part of the Productive Margins: Regulating for Engagement programme. Bringing together two community partners, Knowle West Media Centre in Bristol and 3Gs Community Development Trust in Merthyr Tydfil, the project used workshop methods to explore perceptions of women about personal data they put online and how to take more control over this.
DOI: 10.1285/i20356609v11i2p313
title: Politics, Participation and Big Data. Introductory Reflections on the Ontological, Epistemological, and Methodological Aspects of a Complex Relationship

description: This editorial defines big data as an inherently political object and then briefly discusses its on-tological, epistemological, and methodological implications in the social sciences. Furthermore, it address-es these issues in connections with the realm of politics, political participation and political mobilization. Finally, it addresses three main emergent themes related to big data in the broad realm of politics. First, big data as a methodological conundrum - something that can possibly empower or completely bias re-search activities and results. Second, big data as an object of study in its own right, a contested research and political terrain characterized by strong power dynamics between private and public actors and en-twining with governance processes at all levels - from the national to the transnational one. Third, big data as research catalyser that can leverage our understanding of participation and contentious dynamics.
DOI: 10.1285/i20356609v11i2p361
title: From Super-Participants to Super-Echoed. Participation in the 2018 Italian Electoral Twittersphere

description: Who and how takes part in a typical Twitter discussion about political elections? In what degree? In our study we try to shed some light on these questions by examining the case of Italian 2018 national election. Starting from the database that we collected during the latest general campaign, we analyse all the users who participated in the discussion unfolding in the two months preceding the vote. To do that, we exploit the concept of super-participants isolating the 1% of users who generate large part of the discussion. We study them identifying the two main participation flows in the Twittersphere generated by tweets and retweets, discovering that participation curves are very skewed. To address issues of centrality and inclusiveness in online communication, we look at who the super-participants are in the broader society, finding that many of them are citizens. To inquire if participation draws attention, we identify a set of super-echoed users discovering that, belonging to élite categories is still an advantage given that starting popularity is often more important to be shared than participation. In fact, citizens’ super-participation is not mirrored by an equally consistent received attention. Notwithstanding, political supporters and satirical blogs emerge to be two very interesting categories.