cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13889311
title: Complete sequences of six major histocompatibility complex haplotypes rev2

description: Sequences that the analysis in the paper Houwaart et. al. 2023 was based on
DOI: 10.5281/zenodo.13923770
title: Large size (2120_5000) datasets with negative sample sequences

description: This compressed file contains the reference sequences used to generate the 2120 dataset with 5000 samples
DOI: 10.5281/zenodo.268465
title: Miyazaki94

description: <strong>Attribute Information</strong>


	<strong>ID</strong>: Project ID
	<strong>KSLOC</strong>: the number of COBOL source lines in thousands excluding comment lines, and screen and form definition codes. Lines of code copied by the COPY statement are also excluded, but lines registered as COPY phrases are included.
	<strong>SCRN</strong>: number of different input or output sceens
	<strong>FORM</strong>: number of different (report) forms
	<strong>FILE</strong>: number of different record formats
	<strong>ESCRN</strong>: total number of data elements in all the screens
	<strong>EFORM</strong>: total number of data elements in all the forms
	<strong>EFILE</strong>: total number of data elements in all the files
	<strong>MM</strong>: Man-Months form system design to systems test including indirect effort such as project management. one MM is defined as 160 hours of working time.
description: {"references": ["Robust regression for developing software estimation models"]}
DOI: 10.5281/zenodo.6617246
title: Sample graphs and sequences for testing sequence-to-graph alignment

description: File descriptions: MHC-61.agc: 61 complete MHC sequences, including GRCh38, CHM13 and 59 haplotypes extracted from HPRC year-1 assemblies. Use AGC to extract individual haplotype sequences. MHC-57.gfa.gz: sequence graph constructed by minigraph-0.18, excluding sample HG002 and HG005 C4-96.agc: 96 complete C4 sequences obtained from HPRC C4-90.gfa.gz: sequence graph extracted from the full HPRC year-1 minigraph graph (v0.17) around the C4A/C4B genes. The graph takes GRCh38 as the reference and excludes sample HG002, HG005 and NA19240.
DOI: 10.5281/zenodo.8000674
title: Data for Lessons learned during the health crisis caused by COVID-19 in the work of the nursing professional. : A systematic review

description: Data for Lessons learned during the health crisis caused by COVID-19 in the work of the nursing professional. : A systematic review
DOI: 10.5281/zenodo.8166434
title: Cell behaviors underlying Myxococcus xanthus aggregate dispersal

description: The soil bacterium Myxococcus <em> xanthus</em> is a model organism with a set of diverse behaviors. These behaviors include the starvation-induced multicellular development program, in which cells move collectively to assemble multicellular aggregates. After initial aggregates have formed, some will disperse, with smaller aggregates having a higher chance of dispersal. Initial aggregation is driven by two changes in cell behavior: cells slow down inside of aggregates and bias their motion by reversing direction less frequently when moving towards aggregates. However, the cell behaviors that drive dispersal are unknown. Here we use fluorescent microscopy to quantify changes in cell behavior after initial aggregates have formed. We observe that after initial aggregate formation, cells adjust the bias in reversal timings by initiating reversals more rapidly when approaching unstable aggregates. Using agent-based modeling, we then show dispersal is predominantly generated by this change in bias, which is strong enough to overcome slowdown inside aggregates. Notably, the change in reversal bias is correlated with the nearest aggregate’s size, connecting cellular activity to previously observed correlations between aggregate size and fate. To determine if this connection is consistent across strains, we analyze a second M. <em>xanthus</em> strain with reduced levels of dispersal. We find that far fewer cells near smaller aggregates modified their bias. This implies that aggregate dispersal is under genetic control, providing a foundation for further investigations into the role it plays in the life cycle of M. <em> xanthus</em>.
DOI: 10.5281/zenodo.8202986
title: SCALABLE - Social-ecological pathways and gender perspectives for future conservation of biocultural mountain agro-ecosystems - Deliverable 1.1: Database of social perceptions towards impacts and threats

description: <strong>D1.1: Database of social perceptions towards impacts and threats</strong> <strong>.- Social database in case study 1: Almócita, Almería, Spain</strong> This dataset contains the results from a social survey targeting rural local communities over their perceptions on rural abandonment. Respondents were asked about: a) relation with the rural area and human-nature connectedness; b) perception toward rural abandonment and drivers of change; c) specific activities that in the municipality are carried out to face rural abandonment and how those activities are connected and promote different human well-being components. A final section of the survey compiled socio-demographic information to allow the characterization of the respondents. The survey was carried out by face-to-face and the data compilation was using tablets and manually. In this upload you can find 2 files: 1- Database: this file contains the dataset with all the valid responses to the survey. blank spaces mean that the question was left unanswered by the respondents. 2- Document of the face-to-face survey with all the questions and panels used for the social sampling: a) panel of drivers of change; b) panel of activities; and c) panel of contributions. <strong>.- Social database in case study 2: Purchena, Almería, Spain</strong> This dataset contains the results from a social survey targeting rural local communities over their perceptions on human-nature connections and their dimensions, as well as factors for reconnecting with rural areas. Respondents were asked about: a) human-nature connectedness in a rural areas; b) dimensions of human-nature connectedness; and c) reconnection with nature. A final section of the survey compiled socio-demographic information to allow the characterization of the respondents. The survey was carried out by face-to face and online, and the data compilation was manually. In this upload you can find 2 files: 1- Database: this file contains the dataset with all the valid responses to the survey. blank spaces mean that the question was left unanswered by the respondents. 2- Document of the face-to-face survey with all the questions used for the social sampling.
description: "This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 101031168"
DOI: 10.5281/zenodo.8210903
title: Illuminating the Hierarchical Segmentation of Faults through an Unsupervised Learning Approach applied to clouds of earthquake hypocenters [Dataset]

description: Data repository to the preprint “Illuminating the Hierarchical Segmentation of Faults through an Unsupersived Larning Approach applied to clouds of earthquake hypocenters” by Piegari et al. (2023), including the datasets for the three analyzed earthquake catalogs.
DOI: 10.5281/zenodo.8264413
title: Material suplementar para o artigo: Usability Evaluation of mobile banking applications in the context of the elderly in a city of Ceará

description: Material suplementar: Questionário diagnóstico Questionário pós-teste Questionário diagnóstico questões abertas Questionário pós-teste questões abertas TCLE
DOI: 10.6073/pasta/a81b6a2dd23a8b12360412c492fe8040
title: Data to explore circular manureshed management in beef supply chains of the United States and western Canada

description: Circular management of beef supply chains holds great promise for improving sustainability from grazing agroecosystem to dinner plate. In the United States and Canada, one approach to circularity entails transporting manure nutrients from cattle produced in feedlots back to the grazing agroecosystems where they originated to enrich haylands for further grazing cattle production. We provide data to assess this strategy centered around three grazing agroecosystems: Florida, New Mexico, and the provincial assemblage of Manitoba, Saskatchewan, Alberta, British Columbia. We describe four datasets that can be used to estimate the potential nutrient utilization of hay fed to grazing cattle in the three grazing agroecosystems and the magnitudes of feedlot manure nutrients available for transport back to them. We found that although biogeography and management differ among the three grazing agroecosystems, the hay allocated for grazing cattle represented approximately 65% of the total harvested hay produced per agroecosystem after accounting for harvest losses, and that on average all three areas exported about 450,000 cattle annually for feedlot, pasture, and slaughter to states across the US. Although we highlight only three grazingland settings, our approach relies on methods that could ultimately be scaled nationally and internationally, with applicability to other animal industries for which circular management is an aspiration for sustainability outcomes.
DOI: 10.6080/k0sb43p8
title: Multi-electrode recordings of anesthetized macaque V1 responses
                   to static natural images and gratings
title: CRCNS.org pvc-8

description: This data consist of multi-electrode recordings from V1 in anesthetized macaque
                monkeys, while natural images and gratings were flashed on the screen. Recordings
                were performed using the “Utah” electrode array.  Natural images were presented at
                two sizes, 3-6.7 degrees and windowed to 1 degree, to quantify surround modulation.
DOI: 10.6084/m9.figshare.22141334
title: Dataset ANFIS model for sustainability performance assessment of sago industry supply chain

description: This dataset consists of two data sets to create a sustainability assessment model using the Adaptive Neuro-Fuzzy Inference System (ANFIS) used in the Matlab software: 1. Dataset for model learning 2. Dataset for model testing
DOI: 10.6084/m9.figshare.24543280.v1
title: IPT excel.xlsx

description: Demographic and medical information of human immunodeficiency virus positive patients attending antiretroviral therapy clinics.
DOI: 10.6084/m9.figshare.27091777
title: Polymer Functionalized Perovskite Piezocomposites with Large Current Density Output Data sets.xlsx

description: The data used for plotting the figures
DOI: 10.6084/m9.figshare.27178755
title: Supplementary Material for: Prevalence, clinical features, and outcomes of young patients with idiopathic pulmonary fibrosis

description: Introduction: 
Idiopathic pulmonary fibrosis (IPF) can occur at any age; however, studies on younger IPF patients are scarce because it primarily affects the elderly. This study aimed to investigate the clinical features and outcomes of younger IPF patients.

Methods: 
We analyzed the National Korean Health Insurance Review and Assessment Service (HIRA) database from 2015 to 2021. Patients with IPF were identified using the International Classification of Diseases 10th Revision (ICD-10) codes and the Rare Intractable Diseases codes and were categorized into three age groups: &lt; 50, ≥ 50 & &lt; 65, and ≥ 65 years. The risk of acute exacerbation (AE) and mortality were analyzed. 

Results: Among 4,243 patients with IPF, 91 were under 50. These younger patients, who were predominantly female, exhibited less comorbidities and received more systemic steroids, whereas older group received more pirfenidone. Although AE risk increased with age, it was not statistically significant. Mortality and lung transplantation risks increased notably with age from the &lt; 50 group to the ≥ 50 & &lt; 65 group (hazard ratio [HR]: 1.52, 95% confidence interval [CI]: 0.93-2.49) and the ≥ 65 group (HR: 2.44, 95% CI: 1.51-3.93). These risks were influenced by factors such as age, comorbidities, previous AEs, and steroid use. Conversely, pirfenidone treatment reduced the risk.

Conclusion: While younger IPF patients had a lower risk of mortality and lung transplantation, with no significant differences in the risk of AEs, they were less likely to receive antifibrotic therapy and more often treated with steroids, which may affect outcomes. Early, targeted treatment strategies, including antifibrotic use, are crucial for improving their prognosis
DOI: 10.6084/m9.figshare.27247437
title: Supplementary Material for: Association Between Changes in Preoperative Serum Creatinine and Acute Kidney Injury After Cardiac Surgery: A Retrospective Cohort Study

description: Introduction: Limited information exists regarding the impact of preoperative serum creatinine changes on cardiac surgery-associated acute kidney injury (CSA-AKI). This study aimed to investigate the development of AKI in patients with a baseline estimated glomerular filtration rate (eGFR) of ≥60 mL/min/1.73 m2 who present with an elevation in preoperative serum creatinine. Methods: This retrospective cohort study assessed patients who underwent open-heart surgery. Preoperative serum creatinine change was calculated as the ratio of the maximum preoperative serum creatinine value to the baseline creatinine (MCR). Patients were categorized into three groups based on MCR: non-elevation (≤1.0), mild elevation (1.0 to 1.5), and pronounced elevation (≥1.5). Multivariable logistic regression was used to estimate the risk of AKI, severe AKI, and non-recovery from AKI. Results: There were significant increases in the odds of AKI (adjusted odds ratio [OR], 1.42; 95% confidence interval [CI], 1.29–1.57; per 0.1 increase in MCR), severe AKI (adjusted OR, 1.28; 95% CI, 1.15–1.41), and AKI non-recovery (adjusted OR, 1.29; 95% CI, 1.16–1.43). Pronounced elevation in preoperative serum creatinine was associated with a higher risk of AKI (adjusted OR, 15.45; 95% CI, 6.63–36.00), severe AKI (adjusted OR, 3.62; 95% CI, 1.20–10.87), and AKI non-recovery (adjusted OR, 4.74; 95% CI, 1.63–13.89) than non–elevation. Mild elevation in preoperative serum creatinine was also significantly associated with AKI (adjusted OR, 3.76; 95% CI, 1.92–7.37). Conclusions: Elevation in preoperative serum creatinine from baseline was associated with an increased risk of AKI; even mild elevation significantly increased the risk of AKI.
DOI: 10.1285/i20356609v7i3p469
title: The Mediatization of Politics. From the National to the Transnational

description: The mediatization of politics is generally explained in relation to the legitimacy requirements of the modern state and as such, it is typically confined to the national media sphere. Can we speak in any meaningful way of mediatization beyond the national? The European Union (EU), which operates under increasing legitimacy constraints and is exposed to the salience of media debates that contest its public legitimacy, is a case in point. Is the EU becoming mediatized? And what are the effects of EU mediatization? Under what conditions can the mass media become a facilitator of European integration? The issue at stake is whether the media (new and old) can have an integration function beyond the national and facilitate the building of democratic legitimacy of the European Union. We propose that the concept of mediatization offers the theoretical and analytical tools necessary to understand precisely how the interaction between the EU polity and the media unfolds and how it impacts on the process of the EU’s public legitimation. First we deliver a general account of mediatization, highlighting its core definers and main points of critique that the concept has attracted. We then show how mediatization is relevant to the EU pol­ity and propose an analytical model that can capture this process empirically
DOI: 10.1285/i24212113v5i2p63
title: In search of a critical stance: Applying qualitative research practices for critical quantitative research in psychology

description: Critical research seeks to understand the influence of hegemony through the experiences of oppressed groups. In this paper, we consider how core qualitative research practices, such as memoing to document positionality and to archive decision making, can align quantitative research with a critical epistemological stance.
DOI: 10.13026/5phr-4r89
title: SCRIPT CarpeDiem Dataset: demographics, outcomes, and per-day clinical parameters for critically ill patients with suspected pneumonia

description: Traditional approaches to analyzing episodes of patient care in the ICU
examine features on presentation and outcomes on discharge, collapsing the
numerous events that happen during a patient's stay and ignoring intercurrent
ICU complications or interventions. With CarpeDiem, we aimed to examine
clinical features on a per-day basis as done during the common practice of
daily physician rounds. The Successful Clinical Response in Pneumonia Therapy
(SCRIPT) CarpeDiem Dataset features 12,495 patient-ICU-days from 585 patients
enrolled in the SCRIPT study between June 2018 and March 2022, all of whom
were critically ill patients on mechanical ventilation suspected of having
pneumonia who underwent a bronchoalveolar lavage as part of routine clinical
care. Each patient has demographics, pneumonia episode information as
adjudicated by a panel of critical care physicians, outcomes, and 44 clinical
parameters for which data are present including vital signs, laboratory
parameters, and mechanical support devices. Data have been deidentified per
Health Insurance Portability and Accountability Act (HIPAA) Safe Harbor rules.
This dataset combines expert clinician adjudication with per-day granular
information to provide a unique tool to examine the clinical courses of
critically ill patients with pneumonia. We use this dataset in a manuscript
examining the contribution of ventilator-associated pneumonia to patient
outcomes (see Usage section for details) and share it for others to work with.
DOI: 10.15468/dl.wc4hqm
title: Occurrence Download

description: A dataset containing 899338 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Specimen"
 ]
 },
 {
 "or" : [
 "Issue is Coordinate out of range",
 "Issue is Coordinate rounded",
 "Issue is Geodetic datum assumed WGS84",
 "Issue is Coordinate reprojected",
 "Issue is Coordinate reprojection failed",
 "Issue is Coordinate reprojection suspicious",
 "Issue is Coordinate accuracy invalid",
 "Issue is Coordinate precision invalid",
 "Issue is Coordinate uncertainty meters invalid",
 "Issue is Coordinate precision/uncertainty mismatch",
 "Issue is Country coordinate mismatch",
 "Issue is Country mismatch",
 "Issue is Country invalid",
 "Issue is Country derived from coordinates",
 "Issue is Continent country mismatch",
 "Issue is Continent invalid",
 "Issue is Continent derived from coordinates",
 "Issue is Presumed swapped coordinate",
 "Issue is Presumed negated longitude",
 "Issue is Presumed negated latitude",
 "Issue is Recorded date mismatch",
 "Issue is Recorded date invalid",
 "Issue is Recorded date unlikely",
 "Issue is Taxon match none",
 "Issue is Depth not metric",
 "Issue is Depth unlikely",
 "Issue is Depth min max swapped",
 "Issue is Depth non numeric",
 "Issue is Elevation unlikely",
 "Issue is Elevation min max swapped",
 "Issue is Elevation not metric",
 "Issue is Elevation non numeric",
 "Issue is Modified date invalid",
 "Issue is Identified date unlikely",
 "Issue is Identified date invalid",
 "Issue is Basis of record invalid",
 "Issue is Multimedia date invalid",
 "Issue is Multimedia URI invalid",
 "Issue is References URI invalid",
 "Issue is Error during interpretation",
 "Issue is Individual count invalid",
 "Issue is Occurrence status inferred from individual count"
 ]
 },
 {
 "or" : [
 "License is CC0 1.0",
 "License is CC-BY 4.0"
 ]
 },
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Carcharhiniformes",
 "TaxonKey is Pristiophoriformes",
 "TaxonKey is Squaliformes",
 "TaxonKey is Hexanchiformes",
 "TaxonKey is Orectolobiformes",
 "TaxonKey is Lamniformes",
 "TaxonKey is Heterodontiformes",
 "TaxonKey is Squatiniformes"
 ]
 }
 ]
}

 The dataset includes 899338 records from 330 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075103-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.edfgyz
title: Occurrence Download

description: A dataset containing 6040 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Harpia harpyja (Linnaeus, 1758)"
 ]
}

 The dataset includes 6040 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068319-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/2bc5vv
title: The Sea Slug Phanerophthalmus luteus (Gastropoda: Opisthobranchia) and its Habitat and Ecology at the Marine Jellyfish Lake (Ongeim’l Tketau), Palau, Western Pacific Ocean

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ghiselin, Michael T., Lipps, Jere H. (2019): The Sea Slug Phanerophthalmus luteus (Gastropoda: Opisthobranchia) and its Habitat and Ecology at the Marine Jellyfish Lake (Ongeim’l Tketau), Palau, Western Pacific Ocean. Proceedings of the California Academy of Sciences 65 (8): 181-194, DOI: 10.5281/zenodo.12724849
DOI: 10.15468/myz3mn
title: New northernmost records of the shield mantis Choeradodis rhombicollis (Latreille, 1833) (Mantidae: Choeradodinae) in Mexico

description: This dataset contains the digitized treatments in Plazi based on the original journal article de Luna, Manuel, Hernández-Baltazar, Erick, Cubillos-Macías, Iker, García-Barrios, Roberto (2024): New northernmost records of the shield mantis Choeradodis rhombicollis (Latreille, 1833) (Mantidae: Choeradodinae) in Mexico. Revista Chilena de Entomología (Rev. Chil. Entomol.) 50 (1): 5-11, DOI: 10.35249/rche.50.1.24.01, URL: http://dx.doi.org/10.35249/rche.50.1.24.01Abstract. The shield mantis Choeradodis rhombicollis (Latreille, 1833) is a neotropical species that had been recorded for Mexico in the states of Chiapas and Oaxaca. This work report for the first time its presence for the state of Veracruz via the examination of specimens deposited in scientific collections, as well as the revision of records present on the citizen science platform iNaturalist. The new records for Veracruz correspond to the northernmost distribution for the species, genus, and subfamily in America.
DOI: 10.15468/mmvur7
title: Neoacla (Hattersleya) chicaquensis sp. nov. (Orthoptera: Phalangopsidae), a new spider cricket from Andean cloud forests

description: This dataset contains the digitized treatments in Plazi based on the original journal article García, Alexander García (2025): Neoacla (Hattersleya) chicaquensis sp. nov. (Orthoptera: Phalangopsidae), a new spider cricket from Andean cloud forests. Zootaxa 5636 (2): 351-360, DOI: 10.11646/zootaxa.5636.2.8, URL: https://doi.org/10.11646/zootaxa.5636.2.8AbstractNeoacla (Hattersleya) chicaquensis sp. nov., a new phalangopsid cricket species from the cloud forest of Chicaque Natural Park, is described. This species represents the first record of the genus Neoacla Desutter, 1988, in Colombia, the Andes, and the highland regions. Previously, all known species of this genus had only been recorded in forests ranging from Costa Rica to Ecuador and in the Amazon regions of Peru and Ecuador. Finally, the taxonomy, morphology, and distribution of the new species are discussed.