cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20059091.v1
title: Bats in Temples of south India

description: The data includes microhabitats inside temples where bats were roosting. Dark rooms: closed rooms with few small openings, low natural light and not frequently used by people; Crevices: stone pillars that supported the roof created gaps between the joints for some species to roost; Temple towers: conical structures built over the entrance or the deity and Walkways: wide walking space around the deity room covered by a stone roof. We also counted the number of independent buildings in the temple complex, which bats use to move between them during the day due to disturbance. Temple size was based on visual observation; those with deity rooms and walkways were considered small, those with deity rooms, walkways and towers considered medium-sized, and those having deity rooms, multiple towers, and two walkways (inside and outside) were considered large. We also recorded the number of trees in the temple complex and open wells used by bats. <br> We classified disturbances such as renovation, construction, power washing, and other maintenance activities as 0 or 1. A temple received a value of 0 when there was no disturbance and a value of 1 when there was a disturbance. We also collected information on the number of temple visitors and classified temples on a scale of 1 to 3, with 1 indicating few visitors and 3 indicating having large crowds. <br> <strong>Land-use features</strong> We used the composite analysis of land cover available using high-resolution (10m) European Space Agency (ESRI) data for 2020 [41] to identify major land uses around temples in the region.
DOI: 10.6084/m9.figshare.24290815.v1
title: Supplementary Material for: Machine learning for the prediction of survival post-allogeneic hematopoietic cell transplantation: A single-center experience

description: Introduction: Prediction of outcomes following allogeneic hematopoietic cell transplantation (HCT) remains a major challenge. Machine learning (ML) is a computational procedure that may facilitate the generation of HCT prediction models. We sought to investigate the prognostic potential of multiple ML algorithms when applied to a large single-center allogeneic HCT database. Methods: Our registry included 2697 patients that underwent allogeneic HCT from January 1976 to December 2017, 45 pre-transplant baseline variables were included in the predictive assessment of each ML algorithm on overall survival (OS) as determined by area under the curve (AUC). Pre-transplant variables used in the EBMT machine learning study (Shouval et al, 2015) were used as a benchmark for comparison. Results: On the entire dataset, the random forest (RF) algorithm performed best (AUC 0.71±0.04) compared to the second-best model, logistic regression (LR) (AUC=0.69±0.04) (p&lt;0.001). Both algorithms demonstrated improved AUC scores using all 45 variables compared to the limited variables examined by the EBMT study. Survival at 100 days post-HCT using RF on the full dataset discriminated patients into different prognostic groups with different 2-year OS (p&lt;0.0001). We then examined the ML methods that allow for significant individual variable identification, including LR and RF, and identified matched related donors (HR=0.49, p&lt;0.0001), increasing TBI dose (HR=1.60, p=0.006), increasing recipient age (HR=1.92, p&lt;0.0001), higher baseline Hb (HR=0.59, p=0.0002) and increased baseline FEV1 (HR=0.73, p=0.02), among others. Conclusion: The application of multiple ML techniques on single center allogeneic HCT databases warrants further investigation and may provide a useful tool to identify variables with prognostic potential.
DOI: 10.6084/m9.figshare.27013162.v1
title: Data for Fragmentation of Urban Ecological Network Structure v1

description: The data set contains: 1) the calculation results of DDI, which is used to diagnose the fracture degree of the ecological corridor; 2) The original data corresponding to the 16 indicators of SES (numerical type, units of corresponding indicators), the data involved include Geographical censuses data, Traffic road network data, Forest surveys data,Digital Elevation Model, NDVI, Biodiversity surveys data et al.
DOI: 10.6084/m9.figshare.24486028.v1
title: <i>Crucihimalaya himalaica</i> genome data

description: <i>Crucihimalaya himalaica</i>, a close relative of the model plant <i>Arabidopsis thaliana</i>, is predominantly found around the Qinghai-Tibet Plateau (QTP). We present an updated high-quality genome assembly for<i> C. himalaica</i> at the chromosome level.
DOI: 10.6084/m9.figshare.19125935.v1
title: Survival during cardiac directed differentiation does not depend on initial human induced pluripotent stem cell differences

description: Targeted sequencing of barcodes from genomic DNA harvested from hiPS cell-derived cardiomyocytes and hiPS cells, of which only a subset had barcodes. hiPS cells were lentivirally transduced at different MOI with barcode libraries consisting of random 100-mers in the 3’ untranslated region of a green fluorescent protein (GFP) transgene after which they were permitted to divide approximately three times before being split and seeded for two parallel differentiations. On day 15 of differentiation (17 days after seeding), we isolated genomic DNA from cells (after fluorescent activated cell sorting (FACS) gated on GFP positivity for one condition), then performed targeted amplification of the barcode vector for sequencing. See Jiang et al. citation for additional details.
DOI: 10.6084/m9.figshare.24516712.v1
title: supportingdataIPWGAN

description: It is the parametric statistical result of the generated pore space.
DOI: 10.6084/m9.figshare.19807282.v3
title: Environmental_monitoring_data_showerheads

description: Datasets from environmental monitoring of showerheads in a large building.
DOI: 10.6084/m9.figshare.22336285.v1
title: Supplementary Material for: Impact of changes in human airway epithelial cellular composition and differentiation on SARS-CoV-2 infection biology

description: The consequences of infection with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) can range from asymptomatic to fatal disease. Variations in epithelial susceptibility to SARS-CoV-2 infection depend on the anatomical location from the proximal to distal respiratory tract. However, the cellular biology underlying these variations is not completely understood. Thus, air-liquid interface (ALI) cultures of well-differentiated primary human tracheal and bronchial epithelial cells were employed to study the impact of epithelial cellular composition and differentiation on SARS-CoV-2 infection by transcriptional (RNA sequencing) and immunofluorescent analyses. Changes of cellular composition were investigated by varying time of differentiation or by using specific compounds. We found that SARS-CoV-2 primarily infected ciliated cells but also goblet cells and transient secretory cells. Viral replication was impacted by differences in cellular composition, which depended on culturing time and anatomical origin. A higher percentage of ciliated cells correlated with a higher viral load. However, DAPT-treatment, which increased number of ciliated cells and reduced goblet cells, decreased viral load, indicating the contribution of goblet cells to infection. Cell-entry factors, especially cathepsin L and transmembrane protease serine 2, were also affected by differentiation time. In conclusion, our study demonstrates that viral replication is affected by changes in cellular composition, especially in cells related to the mucociliary system. This could explain in part the variable susceptibility to SARS-CoV-2 infection between individuals and between anatomical locations in the respiratory tract.
DOI: 10.6084/m9.figshare.27800397.v1
title: <b>Dental disease in rabbits under UK primary veterinary care: Retrospective analysis of clinical management and associated welfare impacts</b>

description: Through descriptive analysis of retrospective clinical data from a companion rabbit population, we described the presenting clinical signs of rabbits with dental disease, the diagnostic and treatment methods utilised by UK primary-care veterinarians, and the mortality associated with the disease. Additionally, frequency of case referral for advanced clinical management was recorded to gauge general confidence in dental disease treatment. Data on whether dietary modification was suggested for affected rabbits were also extracted to identify veterinary awareness and application of this important aspect of dental disease prevention.
DOI: 10.21233/jmkp-fp70
title: Ningbo  ostracode surface sample dataset

description: Raw data for the Ningbo  ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.11618232.v1
title: Supplementary Material for: Trauma Severity in Early Childhood Correlates with Stress and Satiety Hormone Levels in a Pilot Cohort Receiving Diamorphine Maintenance Treatment

description: <b><i>Aims:</i></b> Childhood trauma is of importance for the manifestation of substance-related disorders and maintenance of hypothalamic-pituitary-adrenal (HPA)-axis disorders. Since stress plays a crucial role in opioid compliance and craving, we investigated the immediate effects of diacetylmorphine application on the HPA axis. In particular, adrenocorticotropic hormone (ACTH) and cortisol secretion, as well as satiety regulating proopiomelanocortin peptides α-melanocyte-stimulating hormone (MSH) and β-endorphin (END) in a cohort of opioid-dependent patients in diamorphine maintenance treatment concerning the clinical severity of their childhood trauma. <b><i>Methods:</i></b> We compared the serum levels of ACTH, cortisol, MSH, and END in 15 opioid-dependent patients. All participants received treatment with diamorphine and were observed at 5 timepoints before and after injection. We split the cohort into 2 subgroups concerning childhood trauma measured by the Childhood Trauma Questionnaire. <b><i>Results:</i></b> Splitting in 2 subgroups for mild (5) and severe trauma (10), we found that while both groups show a significant reduction of ACTH and cortisol levels over time, slopes display different progressions over time for cortisol (<i>F</i>[1.6] = 9.38, <i>p</i> = 0.02), while remaining identical for ACTH (<i>F</i>[1.6] = 1.69, <i>p</i> = 0.24). Also, levels of both MSH and END were significantly lower in severely traumatized patients. <b><i>Conclusions:</i></b> For the first time, we present a detailed representation of stress- and addiction-related proteins for the first 5 h after diamorphine application, demonstrating the interrelationship between stress hormones and childhood trauma as well as its potential effects on the progression of addictions such as opioid dependence.
DOI: 10.17632/22pv7d64kg
title: Simulations for lower bound of process capability index

description: Computer simulation using Excel to compare several methods for the estimation of the lower bound of process capability index. (Notice that it can take between 10 and 15 min. to open up the file).
DOI: 10.17632/4rtccnc4mv
title: Data for: Graph-based network modeling and simulation of condensers in once-through cooling water system under the effect of biofouling formation

description: The supplementary material offered in this work contains source codes, approximate property models and additional results. The source codes are written in Python and Jupyter Notebook and were made available by the authors as a compressed archive file and is free software. All the json files with inputs and outputs for the different simulation cases were also made available by the authors as a compressed archive file. The authors reinforce that these codes can be redistributed and/or modified it under the terms of the GNU General Public License version 3 as published by the Free Software Foundation (GNU philosophy). Instruction, installation procedures and further examples are presented in different README.md files throughout the directory trees.
DOI: 10.17632/6snc9pt7bc
title: The Impact of Board Games on the Financial Literacy of Brazilian Public-School Students

description: The following data was collected to assess the impact of the use of board games on the learning of financial literacy among public school students in Rio Grande do Sul - Brazil. 

The procedures carried out were:

1 - Research authorization by the ethics committee under the CAAE Number 67713723.3.0000.5346

2 - Donation of board games with a financial education theme to public schools in the 8th Regional Education Coordination of Rio Grande do Sul. 

3 - Training teachers from these schools to conduct lessons using these board games.

4 - Application of a survey to students from public schools in the 8th Regional Education Coordination of Rio Grande do Sul. The questionnaire was answered by students who had been taught with the use of these games (treatment group) and students who had not been taught with the use of these games (control group).

5 - Data tabulation using Stata software

6 - Application of the propensity score matching method to assess the impact of classes with board games on students' level of financial literacy.

Note: The variables names and descriptions in the database are in Portuguese.
DOI: 10.6084/m9.figshare.19152620.v1
title: Supplementary Material for: AXL and MET in Hepatocellular Carcinoma: A Systematic Literature Review

description: <b><i>Background:</i></b> Multikinase inhibitors (MKIs) have been shown to improve survival in patients with hepatocellular carcinoma (HCC) compared with placebo. Distinct from other MKIs, cabozantinib has inhibitory activity for both AXL and MET. This review considers the literature elucidating the role of AXL and MET in HCC progression, treatment resistance, and immunomodulation. A systematic search of the PubMed database was conducted on November 16, 2020, and identified a total of 174 search results. A further 36 potentially relevant articles were identified based on the authors’ knowledge. After initial screening by title/abstract, 159 underwent full-text screening and we identified 69 original research articles reporting empirical data from in vitro or in vivo models of HCC evaluating the effects of manipulating AXL or MET signaling on tumorigenic behavior. <b><i>Summary:</i></b> AXL expression is highly correlated with HCC progression and outcomes and has been reported to be involved in transforming growth factor-β and the regulation of PI3K/AKT, ERK/MAPK, and CCN proteins. MET protein expression is increased in HCC with the highest histological grade and has been reported to be involved in the regulation of PI3K/AKT, PLCγ/DAG/PKC, and MAPK/ERK signaling. Both AXL and MET are key regulators of sorafenib resistance in HCC. In terms of immunomodulation, there are data to indicate that AXL and MET interact with the immune components of the tumor microenvironment and promote tumorigenesis and treatment resistance. In addition, AXL was found to play a potential role in the development of a protumorigenic neutrophil phenotype in HCC. Combined inhibition of MET and programmed cell death protein resulted in additive reduction of HCC cell growth. <b><i>Key Messages:</i></b> AXL and MET play key roles in HCC progression, treatment resistance, and immunomodulation. Continued development of drugs that target these receptor tyrosine kinases appears likely to represent a useful strategy to improve outcomes for patients with HCC.
DOI: 10.6084/m9.figshare.24545860.v1
title: Fichier SPSS thèse BASE.sav

description: This dataset is derived from a large gender-mixed mostly heterosexual sample of individuals living with SCI (N = 111). Outcome measures include neurological profiles, sociodemographic, sexual function, sexual distress, sexual satisfaction, mood variables, mindfulness (trait and sexual), interoceptive awareness, body image and sexual esteem.
DOI: 10.6084/m9.figshare.27999131.v1
title: The MTDDH dataset for quality evaluation of pelvic X-ray and diagnosis of developmental dysplasia of the hip

description: Developmental Dysplasia of the Hip (DDH) ranks among the foremost hip disorders encountered in pediatric orthopedics. Automated diagnostic tools, powered by artificial intelligence techniques, can assist clinicians in diagnosing DDH. We have constructed a dataset called MTDDH, which consists of two sub-datasets. Dataset1 consists of 1,250 pelvic X-ray images, annotated with four distinct regions for the quality evaluation of pelvic X-ray, in conjunction with eight key points for DDH diagnostic support. Dataset2 comprises 906 pelvic X-ray images, annotated exclusively with the 8 key points pertinent to DDH diagnostic assistance. MTDDH is the first dataset designed for the quality evaluation of pelvic X-rays that also provides the most extensive set of 8 key points (typically 6 key points) for aiding in DDH diagnosis, thereby meeting the need for more precise diagnostic accuracy.
DOI: 10.17632/mkz9zv8gc6
title: Data for: Islandscapes in the Anthropocene: fire as a motor of rapid environmental degradation during the first peopling of Malta 7500 years ago

description: Data associated with the article "Islandscapes in the Anthropocene: fire as a motor of rapid environmental degradation during the first peopling of Malta 7500 years ago" submitted for review to QSR.
DOI: 10.17632/kb68dmck2v
title: Data for: Downregulation of PCAF Attenuates Lipopolysaccharide-Induced Inflammation of Vascular Smooth Muscle Cells and Neointimal Hyperplasia in Balloon-Injured Rat Carotid Artery

description: The original data for 5 Figures
DOI: 10.6084/m9.figshare.13560569.v2
title: IU data

description: We studied how IU affects neural correlates of emotional predictions.
DOI: 10.6084/m9.figshare.21939659.v2
title: Trait references by taxa list

description: List of references by taxa from where trait information was retrieved
DOI: 10.6084/m9.figshare.7694453.v1
title: Raw data and R code used in meta-analysis

description: Data and code for figures and statistics reported in Midolo, G., De Frenne, P., Hölzel, N. & Wellstein, C. (2019). <i>Global patterns of intraspecific leaf trait responses to elevation</i>.<br><br>For a complete list reference of studies included in the meta-analysis, see the Supporting Information of our article.<br><br>See the "csv_file_description" file for detailed information on dataset description and the R code to analyze the data.<br><br>For any question, please contact me at: <b>gabriele.midolo@natec.unibz.it </b><br>
DOI: 10.6084/m9.figshare.13299269.v1
title: Data set used in case study

description: used to evaluate the inventory space management
DOI: 10.6084/m9.figshare.19367729.v1
title: Supplementary Material for: Effects of using epidural analgesia during delivery on maternal and infant outcomes

description: Objectives: To estimate the impact of epidural analgesia (EA) during delivery on maternal and infant outcomes. Design: This study was a prospective cohort study. Participants: In total, 159 pregnant women in Women and Children’s Hospital, School of Medicine, Xiamen university from Nov. 2019 to May 2020. Patients were randomly divided into EA group (n=80) and no analgesia group (n=79). Methods: The duration of labor, levels of umbilical arterial blood gas [pH and partial pressure oxygen (PaO2)], VAS, adverse events were evaluated to compare differences between EA group and no analgesia group, respectively. Results: The duration of the first stage of labor was shorted in the total stage (P=0.002) and the first stage of labor (P=0.001) in EA group compared with no analgesia group. The second stage of labor and third stage of labor, levels of umbilical arterial blood gas and 1min Apgar score in neonates were similar in EA and no analgesia groups (All P&gt;0.05). After adjusting age, pre-pregnancy BMI, and past and present medical history, the VAS was low in EA group compared with no analgesia group when the uterine orifice was completely open [odds ratio (OR)=0.001, 95% confidence interval (CI):0.001-0.002], 8h post-delivery (OR=0.508, 95%CI:0.264-0.977) and 24h post-delivery (OR=0.321, 95%CI:0.167-0.617). EA increased the proportion of adverse events occurring 5 min post-delivery (χ2=10.137, P=0.001), while decreased the proportion of adverse events occurring 24h post-delivery (χ2=4.750, P=0.029). Limitations: In terms of the effects of EA on neonates, we only measured the 1 min Apgar score of neonates. Conclusions: EA might be a promising pain relief method for pregnant women. The results of our study might give a reference for the use of EA during delivery in clinic.
DOI: 10.17632/5tf3yf5h9v
title: GIS data including the digital elevation model (DEM), land use data and manhole data of the Future Science City Park, Beijing

description: The geographic data sources were the digital elevation model (DEM) with the resolution of 10 m, land use with the resolution of 10 m, catchment boundary and manholes, which were gathered for subcatchment subdivision for urban stormwater model development.
DOI: 10.21233/462r-xv62
title: Miyanoura ostracode surface sample dataset

description: Raw data for the Miyanoura ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.24597117.v1
title: Data_GCB_Long-term warming increased carbon sequestration capacity in a humid subtropical forestData_Long-term warming increased carbon sequestration capacity in a humid subtropical forest.xlsxData_GCB_Long-term warming increased carbon sequestration capacity in a humid subtropical forest

description: This study investigates the impact of long-term warming on the carbon dynamics of forest ecosystems. This dataset is not available for commercial use. Please inform and acknowledge in case of any modifications or citations.
DOI: 10.6084/m9.figshare.7908617.v1
title: Energetic constraints on mammalian home range size

description: Data sources, its description, phylogenetic tree and R codes associated with publication.<br>
DOI: 10.17632/f2sy6jc388
title: Lipidomics data, AMPK-mediated lipid droplet plasticity and dispersion dictate the differential sensitivity of melanoma cells to PUFA- and iron-induced ferroptosis

description: Treatment-resistant cancer cells often remain sensitive to ferroptosis, a lipid peroxidation-mediated form of regulated cell death emerging as a promising interventional strategy. Here, using a panel of melanoma cell lines, we find that the ability of iron and polyunsaturated fatty acids (PUFA) to evoke ferroptosis differed substantially among the models and was time-dependent (early versus late onset of ferroptosis). This difference could largely be attributed to the sequestration of PUFA into lipid droplets (LDs) and their differential subcellular (re)distribution and association with lipid-metabolizing organelles like mitochondria. We found that starvation-dependent activation of adenosine monophosphate protein kinase (AMPK) drives the relocation of LDs toward mitochondria in the late responder group. Mitochondrial inhibitors largely rescued cells from PUFA- and iron-induced ferroptosis, corroborating the involvement of mitochondria in ferroptosis induction in these models. Collectively, our work demonstrates that nutrient availability through redispersion of LDs plays a critical regulatory role in PUFA-mediated ferroptosis induction. These findings may have important implications for the further exploitation of ferroptosis in cancer treatment.
DOI: 10.6084/m9.figshare.25963042.v1
title: The part 3 of dataset Outdoor

description: Here we publish the part 3 of the dataset Outdoor used in the paper "FM-Based Positioning via Deep Learning".