cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7300340.v2
title: Integrated analysis of lncRNA–mRNA co-expression networks in the α-particle induced carcinogenesis of human branchial epithelial cells

description: <b>Purpose:</b> To identify the mRNA and long noncoding RNA (lncRNA) expression profiles and explore the lncRNA–mRNA co-expression networks associated with the carcinogenesis induced by α-particles. <b>Materials and methods:</b> Immortalized human bronchial epithelial cell line, BEP2D, and its two malignant transformed cell lines, BERP35T-1 and BERP35T-4, were investigated. The lncRNA and mRNA expression profiles of BEP2D, BERP35T-1 and BERP35T-4 were generated. lncRNAs and mRNAs co-expression analysis was performed. <b>Results:</b> The microarray identified 668 lncRNAs in BERP35T-1 cells and 555 in BERP35T-4 cells that were differentially expressed compared to BEP2D cells. The GO terms and KEGG pathway annotation data indicated that mitotic cell cycle, DNA repair, apoptotic processes, and RNA splicing functional pathways were significantly associated with the α-particle induced cell carcinogenesis. Co-expression network analysis revealed 8902 interactions between 495 differentially expressed mRNAs and 430 corresponding lncRNAs in BERP35T-1 cells compared with BEP2D cells. The genes, situated at the important nodes of the co-expression network, include B3GNT5, RAD23, YWHAZ (14-3-3ζ), FBXW11, TGFBR2, LRP6, PSMD11, MYL12A, etc. <b>Conclusions:</b> This pilot study is the first to explore epigenetic mechanisms of α-particle induced carcinogenesis of human bronchial epithelial cells. It provides basic information for further investigation into the detail mechanisms underlying radiation-induced lung cancer.
DOI: 10.7284/105756
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SAV-10-07 using a RDI WM-300 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7300340.v1
title: Integrated analysis of lncRNA-mRNA co-expression networks in the α-particle induced carcinogenesis of human branchial epithelial cells

description: <b>Purpose:</b> To identify the mRNA and lncRNA expression profiles and explore the lncRNA-mRNA co-expression networks associated with the carcinogenesis induced by α-particles. <b>Materials and Methods:</b> Immortalized human bronchial epithelial cell line, BEP2D, and its two malignant transformed cell lines, BERP35T-1 and BERP35T-4, were investigated. The lncRNA and mRNA expression profiles of BEP2D, BERP35T-1 and BERP35T-4 were generated. lncRNAs and mRNAs co-expression analysis was performed. <b>Results:</b> The microarray identified 668 lncRNAs in BERP35T-1cells and 555 in BERP35T-4 cells that were differentially expressed compared to BEP2D cells. The GO terms and KEGG pathway annotation data indicated that mitotic cell cycle, DNA repair, apoptotic processes, and RNA splicing functional pathways were significantly associated with the α-particle induced cell carcinogenesis. Co-expression network analysis revealed 8902 interactions between 495 differentially expressed mRNAs and 430 corresponding lncRNAs in BERP35T-1 cells compared with BEP2D cells. The genes, situated at the important nodes of the co-expression network, include B3GNT5, RAD23, YWHAZ (14-3-3ζ), FBXW11, TGFBR2, LRP6, PSMD11, MYL12A, etc. <b>Conclusions:</b> This pilot study is the first to explore epigenetic mechanisms of α-particle induced carcinogenesis of human bronchial epithelial cells. It provides basic information for further investigation into the detail mechanisms underlying radiation-induced lung cancer.
DOI: 10.6084/m9.figshare.7300331
title: A reexamination of <i>Milosaurus mccordi</i>, and the evolution of large body size in Carboniferous synapsids

description: <i>Milosaurus mccordi</i> was described in 1970 as a large, pelycosaurian-grade synapsid from the latest Carboniferous of Illinois but has since received little attention. Here, the holotype and referred material of <i>Milosaurus</i> are reexamined and incorporated into a phylogenetic analysis. <i>Milosaurus</i> is resolved within Haptodontiformes, sharing with this clade a posterodorsally expanded ischium and a calcaneum with greater length than width. The more plesiomorphic ischium indicates a basal position within this clade. Most of the referred material shows very little overlap with the holotype and so most was not included in the cladistic analysis. However, what was originally described as a dorsal rib is here judged to be a femur that shares a highly distinctive morphology with the holotype. With its mass estimated as 41 kg, <i>Milosaurus</i> represents one of the largest Carboniferous synapsids. Large size evolved at least twice independently in Haptodontiformes during the Pennsylvanian: once in Sphenacodontidae and once in Edaphosauridae. Using phylogenetic comparative methods, <i>Milosaurus</i> is found to have evolved a large size independently of these two clades. As one of the largest Carboniferous amniotes, and the outgroup to one of the most diverse Paleozoic synapsid lineages, <i>Milosaurus</i> represents a crucial taxon for understanding early terrestrial ecosystems.
DOI: 10.7284/105754
title: GNSS (Global Navigation Satellite System) data collected during research cruise SAV-10-07 using a Furuno GP-90 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7300331.v1
title: A reexamination of <i>Milosaurus mccordi</i>, and the evolution of large body size in Carboniferous synapsids

description: <i>Milosaurus mccordi</i> was described in 1970 as a large, pelycosaurian-grade synapsid from the latest Carboniferous of Illinois but has since received little attention. Here, the holotype and referred material of <i>Milosaurus</i> are reexamined and incorporated into a phylogenetic analysis. <i>Milosaurus</i> is resolved within Haptodontiformes, sharing with this clade a posterodorsally expanded ischium and a calcaneum with greater length than width. The more plesiomorphic ischium indicates a basal position within this clade. Most of the referred material shows very little overlap with the holotype and so most was not included in the cladistic analysis. However, what was originally described as a dorsal rib is here judged to be a femur that shares a highly distinctive morphology with the holotype. With its mass estimated as 41 kg, <i>Milosaurus</i> represents one of the largest Carboniferous synapsids. Large size evolved at least twice independently in Haptodontiformes during the Pennsylvanian: once in Sphenacodontidae and once in Edaphosauridae. Using phylogenetic comparative methods, <i>Milosaurus</i> is found to have evolved a large size independently of these two clades. As one of the largest Carboniferous amniotes, and the outgroup to one of the most diverse Paleozoic synapsid lineages, <i>Milosaurus</i> represents a crucial taxon for understanding early terrestrial ecosystems.
DOI: 10.6084/m9.figshare.7300325
title: Developer clusters data

description: data assembled per developer cluster<br>1-author.txt contains corpora and changes for all classes developed by one developer2-author.txt contains corpora and changes for all classes developed by two developers<br>etc..
DOI: 10.7284/105755
title: Gyrocompass data collected during research cruise SAV-10-07 using a Yokogawa CMZ700B instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7300325.v1
title: Developer clusters data

description: data assembled per developer cluster<br>1-author.txt contains corpora and changes for all classes developed by one developer2-author.txt contains corpora and changes for all classes developed by two developers<br>etc..
DOI: 10.6084/m9.figshare.7300322
title: assembled data, per project

description: one file per project:* project ID* class name* complete corpora size* unique corpora size* number of changes* number of parallel developers
DOI: 10.6084/m9.figshare.7300322.v1
title: assembled data, per project

description: one file per project:* project ID* class name* complete corpora size* unique corpora size* number of changes* number of parallel developers
DOI: 10.7284/105758
title: Meteorological Station data collected during research cruise SAV-10-07 using a RM Young 26800 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7300280
title: Elmes, Thompson, and Price (Catena Data in brief)

description: The following folder contains data used in Elmes et al., (submitted to Catena)
DOI: 10.6084/m9.figshare.7300280.v1
title: Elmes, Thompson, and Price (Catena Data in brief)

description: The following folder contains data used in Elmes et al., (submitted to Catena)
DOI: 10.7284/105757
title: Singlebeam Echosounder data collected during research cruise SAV-10-07 using a Furuno FCV-582 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105759
title: TSG (Thermosalinograph) data collected during research cruise SAV-10-07 using a Sea-Bird SBE-21 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105761
title: GNSS (Global Navigation Satellite System) data collected during research cruise SAV-10-08 using a Furuno GP-90 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7300088
title: Virtual Diabetes Consultation

description: The consultation varied in the doctor’s Character (hero or villain, i.e., good or poor bedside manner), Outcome/Ending (received a fellowship or sued for malpractice), and Depiction (a recorded video of a real human actor or of his 3D computer-animated double).
DOI: 10.7284/105769
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SAV-10-09 using a RDI WM-300 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105773
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SAV-10-09 using a Sea-Bird SBE-25 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7299935
title: protTrace - GO Biological Process analysis for yeast genes classified into different traceability bins

description: Results for GO analysis from GOrilla for yeast genes classified into four traceability bins - &lt;0.25, 0.25 - 0.50, 0.50 - 0.75 and &gt;0.75.In addition, GO analysis for yeast genes grouped into LUCA is also present.
DOI: 10.6084/m9.figshare.7299914
title: sdq_PT.csv

description: SDQ scores from AQUA-Trial. ADHD referred sample of children in UK. Parent and teacher scores.
DOI: 10.6084/m9.figshare.7299914.v1
title: sdq_PT.csv

description: SDQ scores from AQUA-Trial. ADHD referred sample of children in UK. Parent and teacher scores.
DOI: 10.6084/m9.figshare.7299935.v2
title: protTrace - GO Biological Process analysis for yeast genes classified into different traceability bins

description: Results for GO analysis from GOrilla for yeast genes classified into four traceability bins - &lt;0.25, 0.25 - 0.50, 0.50 - 0.75 and &gt;0.75.In addition, GO analysis for yeast genes grouped into LUCA is also present.
DOI: 10.7284/105768
title: Gyrocompass data collected during research cruise SAV-10-09 using a Yokogawa CMZ700B instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105771
title: Meteorological Station data collected during research cruise SAV-10-09 using a RM Young 26800 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105770
title: Singlebeam Echosounder data collected during research cruise SAV-10-09 using a Furuno FCV-582 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105772
title: TSG (Thermosalinograph) data collected during research cruise SAV-10-09 using a Sea-Bird SBE-21 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105779
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SAV-10-10 using a Sea-Bird SBE-25 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105774
title: GNSS (Global Navigation Satellite System) data collected during research cruise SAV-10-10 using a Furuno GP-90 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7297778
title: Giraffes' walking ground reaction forces and stride parameters

description: Walking ground reaction forces and stride parameters from three adult giraffes. Force data were sampled at 240 Hz. Data are in units of Newtons, metres or seconds. Data are stored in a .mat file, which can be opened in Matlab (MathWorks, Massachusetts, USA).
DOI: 10.7284/105775
title: Gyrocompass data collected during research cruise SAV-10-10 using a Yokogawa CMZ700B instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7297778.v1
title: Giraffes' walking ground reaction forces and stride parameters

description: Walking ground reaction forces and stride parameters from three adult giraffes. Force data were sampled at 240 Hz. Data are in units of Newtons, metres or seconds. Data are stored in a .mat file, which can be opened in Matlab (MathWorks, Massachusetts, USA).
DOI: 10.6084/m9.figshare.7297757
title: NicholsonRicketts2018_YieldDeficit_data.csv

description: Please see corresponding metadata document for variable descriptions. These data are production information for highbush blueberry farms where pollination limitation experiments were performed. It presents information on the farm size and berry production. These values can be used with equations 2 & 3 to calculate yield deficit.These data will produce Figure 5 in Nicholson & Ricketts 2018.
DOI: 10.7284/105777
title: Meteorological Station data collected during research cruise SAV-10-10 using a RM Young 26800 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7297754
title: NicholsonRicketts2018_YieldDeficit_metadata.csv

description: Variable descriptions for "NicholsonRicketts2018_YieldDefici_data.csv"
DOI: 10.6084/m9.figshare.7297748
title: NicholsonRicketts2018_Treatment_massAccumulation_data.csv

description: Please see corresponding metadata document for variable descriptions. These data are from a 2 year pollination limitation experiment (2014 N = 9, 2015 N = 8) on Vermont, USA highbush blueberry (Vaccinium corymbosum L.) farms. <br>These data present 1) the number of berries harvested across all bushes from a treatment (hand or open pollinated) on a given sample day, 2) the total mass of those berries, and 3) the total accumulated mass to date. These data will produce Figure 3 in Nicholson & Ricketts 2018.<br>
DOI: 10.6084/m9.figshare.7297751
title: NicholsonRicketts2018_Treatment_massAccumulation_metadata.csv

description: Variable descriptions for "NicholsonRicketts2018_Treatment_massAccumulation_data.csv"
DOI: 10.7284/105776
title: Singlebeam Echosounder data collected during research cruise SAV-10-10 using a Furuno FCV-582 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7297745
title: NicholsonRicketts2018_NativeBeeVisits_yieldMetrics_metadata.csv

description: Variable descriptions for "NicholsonRicketts2018_NativeBeeVisits_yieldMetrics_data.csv"
DOI: 10.7284/105778
title: TSG (Thermosalinograph) data collected during research cruise SAV-10-10 using a Sea-Bird SBE-21 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7297742
title: NicholsonRicketts2018_NativeBeeVisits_yieldMetrics_data.csv

description: Please see corresponding metadata document for variable descriptions. These data are from a 2 year pollination limitation experiment (2014 N = 9, 2015 N = 8) on Vermont, USA highbush blueberry (Vaccinium corymbosum L.) farms. There are two types of data contained: average visitation rates and average yield variables. For visitation rates we present values for all native bees, and rates disaggregated into morphospecies groups (see Table 1 in Nicholson & Ricketts 2018). For yield variables we present average values of seed set (and its coefficient of variation), berry mass (and its coefficient of variation), fruit set and date of 25% harvest. These data will produce Figures 1, 2, and 4 in Nicholson & Ricketts 2018.
DOI: 10.7284/105782
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SAV-10-11 using a RDI WM-300 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7297697.v1
title: emailreceipt_20150628R1216108863.pdf

description: frgg
DOI: 10.7284/105786
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SAV-10-11 using a Sea-Bird SBE-25 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7297565
title: Henry et al., cannabis genetic data (VCF and CSV) for 1409 SNP and 38 highly informative SNPs along with Neighbour joining tree (Supplentarry Figure 1), as well as chemotypic data for the same accessions (Supplementary Table 1).

description: Two VCF (and CSV) files containing 1409 SNPs and 38 highly informative SNPs to predict terpenoid expression and inform individual identification in vegetative cannabis accessions.<br>Supplementary Table 1. Chemotypic data for 70 accessions used in this study. RSPID numbers can be entered into http://kannapedia.net to retrieve original submission and individual VCF files from MGC.<br>Supplementray Figure 1. NJ-tree of the 70 accessions demonstrating lack of confidence in strain names vs clustering of accessions.
DOI: 10.7284/105780
title: GNSS (Global Navigation Satellite System) data collected during research cruise SAV-10-11 using a Furuno GP-90 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105781
title: Gyrocompass data collected during research cruise SAV-10-11 using a Yokogawa CMZ700B instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7297565.v2
title: Henry et al., cannabis genetic data (VCF and CSV) for 1409 SNP and 38 highly informative SNPs.

description: Two VCF (and CSV) files containing 1409 SNPs and 38 highly informative SNPs to predict terpenoid expression and inform individual identification in vegetative cannabis accessions
DOI: 10.7284/105784
title: Meteorological Station data collected during research cruise SAV-10-11 using a RM Young 26800 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7297565.v3
title: Henry et al., cannabis genetic data (VCF and CSV) for 1409 SNP and 38 highly informative SNPs as well as chemotypic data for the same accessions (Supplementary Table 1).

description: Two VCF (and CSV) files containing 1409 SNPs and 38 highly informative SNPs to predict terpenoid expression and inform individual identification in vegetative cannabis accessions
DOI: 10.7284/105783
title: Singlebeam Echosounder data collected during research cruise SAV-10-11 using a Furuno FCV-582 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105785
title: TSG (Thermosalinograph) data collected during research cruise SAV-10-11 using a Sea-Bird SBE-21 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7297499
title: Supplementary materials for "Loss of protein synthesis quality control in host-restricted organisms"

description: This are the supplementary data for the PNAS publication entitled "Loss of protein synthesis quality control in obligate intracellular parasites".
DOI: 10.7284/105787
title: GNSS (Global Navigation Satellite System) data collected during research cruise SAV-10-12 using a Furuno GP-90 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105794
title: GNSS (Global Navigation Satellite System) data collected during research cruise SAV-10-14 using a Furuno GP-90 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105804
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SAV-10-15 using a Sea-Bird SBE-25 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105799
title: GNSS (Global Navigation Satellite System) data collected during research cruise SAV-10-15 using a Furuno GP-90 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition