cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.dnx5gd
title: Occurrence Download

description: A dataset containing 159 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Philydrella pygmaea",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 159 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016526-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31281553
title: <b>Maternal factors influencing mother-to-child transmission of HIV among HIV exposed infants in Machakos Level 5 Hospital in Machakos County, Kenya.</b>

description: A mixed-methods study conducted in Machakos Level 5 Hospital to determine maternal factors influencing MTCT of HIV. Data was collected from mother-infant pairs seeking EID services in the Hospital.
DOI: 10.6084/m9.figshare.31281553.v2
title: <b>Maternal factors influencing mother-to-child transmission of HIV among HIV exposed infants in Machakos Level 5 Hospital in Machakos County, Kenya.</b>

description: A mixed-methods study conducted in Machakos Level 5 Hospital to determine maternal factors influencing MTCT of HIV. Data was collected from mother-infant pairs seeking EID services in the Hospital.
DOI: 10.6084/m9.figshare.31281553.v1
title: <b>Survey data for a study on "Maternal factors influencing mother-to-child transmission of HIV among HIV exposed infants in Machakos Level 5 Hospital in Machakos County, Kenya."</b>

description: A mixed-methods study conducted in Machakos Level 5 Hospital to determine maternal factors influencing MTCT of HIV. Data was collected from mother-infant pairs seeking EID services in the Hospital.
DOI: 10.5167/uzh-290790
title: Radula complanata (L.) Dumort. subsp. complanata
DOI: 10.5167/uzh-290786
title: Sphaerocarpos europaeus Lorb.
DOI: 10.5167/uzh-290794
title: Nowellia curvifolia (Dicks.) Mitt.
DOI: 10.5167/uzh-290795
title: Microlejeunea ulicina (Taylor) Steph.
DOI: 10.5167/uzh-290797
title: Diplophyllum taxifolium (Wahlenb.) Dumort.
DOI: 10.15468/dl.8eryaa
title: Occurrence Download

description: A dataset containing 1035 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Philydrum lanuginosum",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1035 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016528-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ysah8q
title: Occurrence Download

description: A dataset containing 215684 records in GBIF matching the query:

 SELECT gbifid, datasetkey, specieskey, kingdom, phylum, class, "order", family, genus, species, scientificname, decimallatitude, decimallongitude, eventdate, institutioncode, "year" AS obs_year, basisofrecord, coordinateuncertaintyinmeters, issue
 FROM occurrence
 WHERE
 decimallatitude IS NOT NULL
 AND decimallongitude IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND coordinateuncertaintyinmeters IS NOT NULL
 AND coordinateuncertaintyinmeters &gt; 0
 AND coordinateuncertaintyinmeters &lt;= 200.0
 AND decimallatitude &gt;= -37.42857426825602
 AND decimallatitude &lt;= -33.06103686093294
 AND decimallongitude &gt;= -63.32053397346014
 AND decimallongitude &lt;= -55.661165433674526
 AND GBIF_Within('POLYGON ((-55.661165 -37.428574, -55.661165 -33.061037, -63.320534 -33.061037, -63.320534 -37.428574, -55.661165 -37.428574))', decimallatitude, decimallongitude) = TRUE
 

 The dataset's 215684 records were derived from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016514-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48329/ynhs-zb64
title: CPRD Gold March 2026

description: The CPRD Gold database contains longitudinal routinely-collected electronic health records (EHR) from UK primary care practices using Vision® general practice patient management software. The database captures information on demographic characteristics; diagnoses and symptoms; drug exposures; vaccination history; laboratory tests; and referrals to hospital and specialist care.
description: Access to anonymised data from CPRD is subject to a full licence agreement containing detailed terms and conditions of use. Anonymised patient datasets can be extracted for researchers against specific study specifications, following protocol approval via CPRD's Research Data Governance Process. Further information is available at https://www.cprd.com/data-access.
description: Please contact enquiries@cprd.com for further information or if you have any questions.
DOI: 10.15468/dl.yjnyhw
title: Occurrence Download

description: A dataset containing 141 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lithothamnion ruptile"
 ]
}

 The dataset includes 141 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016529-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60945/0f69-1f08
title: TC_global proteomic

description: <p>The aim of this study was to characterize proteomic and phosphoproteomic alterations in testicular cancer, focusing on two major histopathological subtypes: seminoma and non-seminoma. The analysis also aimed to assess the impact of protein phosphorylation changes between tumor and matched control tissue, as well as between tumor subtypes, on cellular homeostasis and dysregulated biochemical processes potentially associated with early metastatic behavior.</p><p>Tumor and matched control tissues were collected from 46 patients undergoing orchiectomy at the Department of Urology, Medical University of Białystok. Tumor samples were obtained directly from the tumor mass, while control tissue was collected from the contralateral pole of the same testis. Proteomic and phosphoproteomic analyses were performed using an Orbitrap Astral mass spectrometer coupled with nano-flow liquid chromatography. Phosphopeptide enrichment was conducted using Ti IMAC HP and Zn IMAC HP magnetic beads. Data were acquired in Data Independent Acquisition (DIA) mode.</p><p>Global proteomic profiling identified approximately 7,500 proteins, including around 2,500 proteins significantly differentiating tumor tissue from control tissue and approximately 1,800 proteins distinguishing seminoma from non-seminoma. Phosphoproteomic analysis enabled the identification of approximately 3,500 phosphorylated proteins.</p><p>Seminomas were characterized by increased expression of proteins involved in antigen processing and presentation, DNA replication and repair, ribosome biogenesis, cell cycle progression, protein synthesis and folding, and mitochondrial translation. In contrast, seminomas exhibited reduced activity of glutathione metabolism, fatty acid oxidation, and cholesterol biosynthesis. Non-seminomatous tumors displayed enhanced activation of extracellular matrix organization, collagen synthesis, cytoskeletal remodeling, cell adhesion, migration, complement system activation, and endoplasmic reticulum stress response. Although both tumor subtypes showed decreased glutathione metabolism relative to control tissue, non-seminomas demonstrated higher glutathione-related activity compared to seminomas.</p><p>These findings provide comprehensive insights into subtype-specific molecular mechanisms of testicular cancer and identify biological processes potentially contributing to tumor progression and early metastasis.</p>
DOI: 10.5281/zenodo.18506403
title: Mineralogical and reflectance spectral data for "Low abundances of ultramafic components in the Chang'e-6 landing site basalt and exotic ejecta"
DOI: 10.15468/dl.mskr7n
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heteranthera zosterifolia",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 122 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016531-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2gz9ht
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Aedes albopictus",
 "Year 2024-2026"
 ]
}

 The dataset includes 48 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016532-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5285/11786f86-a3ac-45ab-81b5-10fd157e3d7a
title: Bank strength measurements in the Amazon River, September to October 2022

description: These data contain bank strength measurements in a 100 km reach of the Solimões River from Sep/Oct 2022 recorded with a shear vane and a cohesion strength meter. In addition, processed satellite (Landsat) imagery from 1984-2021 was used to calculate erosional and depositional area in three 50-120 km long reaches in the Solimoes River presented here as shape-files. Processed Corona imagery 1967 for a 120 km long reach in the Solimoes River shows the banklines and bar outlines. A spreadsheet provides erosional and depositional area at 20-km sections along the 1,600km of the Solimoes River that were based on measuring floodplain width from a digital elevation model (FABDEM). We also attach a GeoTIFF file of the multibeam echo sounder (MBES) data collected during the field campaign in a 20-km long reach in the Solimoes River
description: Field data collection of bank strength and MBES data collection. Conversion of bank strength measurements into kPa using available calibration equations and statistical analysis. MBES data was cleaned and regridded using appropriate software.
Landsat imagery was downloaded from Google Earth Engine as composite images between 1984-88 and 2019-22 and converted into binary maps of water and dry cells for each period. Small channels and lakes were removed in ArcGIS and split into sections of approximately 20- and 10-km lengths. 
GIS analysis was carried out by downloading shape-files from the Global Water Surface Explorer (https://global-surface-water.appspot.com/) for 1984 and 2019 along both banks of the entire Solimoes River. Net erosional and depositional area was computed as the sum of along 20-km reaches. Association and disassociation with cohesive terraces that determined based on a digital elevation model for 2000 for each reach and bank. 
Corona imagery was purchased and georeferenced using GIS software.
DOI: 10.5285/ae96d813-6468-421f-92c0-79f367cadbc3
title: European-wide maps of modelled farm-level ecosystem services, 2019

description: The dataset presented provides average per-farm ecosystem service (ES) values for each NUTS3 region for Europe for the year 2019. The modelled ES are: carbon sequestration [t C ha-1 yr-1], food production (standard economic output) [euros yr-1], and nutrient (nitrogen) export [kg N yr-1]. The data is stored in vector files (GeoPackage). The per-farm ES values were modelled for five sub-country case studies and upscaled for each NUTS3 region where sufficient evidence supported a successful transfer and upscaling. 

Note that the criteria for upscaling the carbon sequestration were not met for any NUTS3 region and therefore the carbon sequestration is returned as NULL for each region.
description: The data is a result of upscaling ecosystem services (ES) across the whole of Europe from five sub-country case studies. Each case study was divided into the NUTS3 regions it covered, which ranged from two to five regions per case study. In total, the data were split into 19 different NUTS3 regions.
The case study data used farm data from 2019, and used the most recent environmental and economic data available, which ranged from 2013 – 2019. The original case study nitrogen export model was a process-based model, namely the InVEST Nutrient Delivery Ratio model. Food production was simulated using the mechanistic WOFOST (WOrld FOod STudies) model. Carbon sequestration was modelled using a statistical model. For a more detailed account of the case study models, please see the supporting documentation. 
A novel methodology was used for the upscaling. The method used compared the predictive power (R2) of meta-models produced in each case study NUTS3 with the Minkowski distance (a metric of distance in multivariate space) of those regions. 
Quality control of each ecosystem service data was mostly carried out through the development of a novel meta-modelling and transferability methodology. The limitations on the data’s reliability vary depending on the specific ecosystem service that was modelled, and are further explained in the supporting documentation.
DOI: 10.5285/bd582f82-ba16-4bc6-8a25-ec29bb22bb5b
title: Weight loss assay data of Polycaprolactone beads exposed to genetically modified microbes expressing plastic degrading enzymes under laboratory conditions

description: This dataset contains information about the weight of plastic (polycaprolactone) beads that were incubated in 10ml of Luria Bertani broth for 5 days at 37 degrees Celsius. Three replicates were performed. The bacterial cells had been modified to harbour plasmids that encoded genes to degrade plastic and/or to trigger the cells to form biofilms, the expression of these genes was induced using Isopropyl β-d-1-thiogalactopyranoside (IPTG). An empty plasmid was used as the control. 

The work was supported by the Natural Environment Research Council (Grant NE/X010902/1), as part of an experiment looking into using synthetic biology to manipulate bacterial social behaviours to maximise the microbial degradation of environmental waste plastics.

description: For Polycaprolactone (PCL) weight loss assays, overnight cultures grown in Luria Bertani (LB) broth at 37 degrees C were used to inoculate 10 mL fresh LB at OD600 0.1 containing sterilised PCL beads. The cultures were grown at 37 degrees C with agitation until OD600 0.6, then were induced with 1 mM IPTG and grown for 5 days. The culture media was refreshed after 3 days due to Ampicillin instability (culture collected, centrifuged at 5000 × g for 15 minutes, pellet resuspended in fresh media and returned to flask). The PCL beads were collected using a fine mesh sieve (63 um), rinsed with distilled water, washed on a room temperature rocker in 2% sodium dodecyl sulphate overnight to remove biofilm, rinsed with distilled water and dried before weighing. Control weight loss flasks with uninoculated media and PCL were used to correct the weight loss measurements to account for instrument error or nonbiological degradation from spontaneous hydrolysis so that the control had 0% weight loss.
DOI: 10.5285/871443a9-6634-4eba-abb5-286a1ab58e9b
title: Field measurements of aboveground biomass, canopy area, stem diameter and sapwood area of Juniperus monosperma trees in New Mexico, collected in 2018 and 2019

description: The dataset consists of observations of aboveground biomass, canopy area, maximum height, stem diameter and sapwood area of Juniperus monosperma (Oneseed Juniper) trees, measured at a site in central New Mexico in 2018 and 2019. In total,  200 stems for sapwood area were measured, and 18 trees for full biomass determinations.



description: Observations were collected by a variety of measurement techniques, including destructive harvesting and UAV proximal remote sensing. 

For further information see the detailed description of methods in the supporting documentation and the associated article.
DOI: 10.5285/eef3a20c-cb4c-415f-b4be-4d1c31fb6015
title: Colony formation data of plastic-degrading bacteria on polycaprolactone (PCL) beads, following modification to induce biofilm formation, under laboratory conditions

description: This dataset contains information about the number of bacterial colonies recovered from plastics beads that were incubated in a 96-well plate for 24 hours at 37 degrees Celsius. Each well in the plate had 1 bead composed of polycaprolactone in it and 150 microlitres of  Isopropyl β- d-1-thiogalactopyranoside (IPTG) induced bacterial cell culture. Three replicates were performed. The bacterial cells had been modified to harbour plasmids that encoded genes to trigger the cells to form biofilms, the expression of these genes was induced using IPTG. An empty plasmid was used as the control. 
The work was supported by the Natural Environment Research Council (Grant NE/X010902/1), as part of an experiment looking into using synthetic biology to manipulate bacterial social behaviours to maximise the microbial degradation of environmental waste plastics.
description: Controls included bacteria with empty vectors that did not contain the genes required to induce biofilm formation. Colonies were recovered from plastic beads following incubation for 24 hours at 37 degrees Celsius with bacteria engineered to have higher levels of biofilm formation. Beads were subsequently removed, washed 3 times in PBS and subsequently sonicated for 10 minutes to remove bacterial biofilm. Serial dilutions were made from the PBS suspension and spotted in triplicate on Luria Broth (LB) agar containing appropriate antibiotics. Plates were incubated for 16 hours at 37 degrees Celsius before colonies were counted.
DOI: 10.5285/77700f8e-5da6-45ab-9c12-df1a7d20bc32
title: Hydrogeochemical data for groundwater remediation systems in Bihar, India, 2018-2022

description: This dataset contains water chemistry for inlet samples for remediation systems in Bihar, India and associated remediation system efficiency for arsenic removal. The dataset contains paired inlet-outlet data for 31 household and community groundwater remediation systems of different technology types (split into reverse osmosis/RO and non-reverse osmosis) and settings (household and non-household). The chemical data includes the composition of inlet water (concentrations of Fe, P, As, Ca, Mg, Na and Si) and associated arsenic removal.

This data was generated as part of the Indo-UK Water Quality Programme Project FAR-GANGA (NE/R003386/1 and DST/TM/INDO-UK/2K17/55(C) & 55(G)).
description: A detailed description of the lineage of the data, including QA/QC steps, is included in the relevant publication Richards et al 2022. In brief, water samples were collected from remediation systems primarily in Bihar, India in 2019 as part of a wider groundwater sampling campaign of groundwater across Bihar. Groundwater samples were analysed using in-situ and laboratory techniques; concentrations of Fe, P, As, Ca, Mg, Na and Si were measured in the Manchester Analytical Geochemical Unit at The University of Manchester using inductively coupled plasma mass spectrometry (Agilent 7500cx) and inductively coupled plasma atomic emission spectrometry (Perkin-Elmer Optima 5300 dual view).
DOI: 10.5285/ea641367-dc35-4695-97b8-63f7d6fa9105
title: Modelled dynamic response characteristics of selected micro-basins in the UK

description: The data are dynamic response characteristics (DRCs) produced by modelling the rainfall-runoff behaviour of a series of micro-basins installed by the NERC Q-NFM project largely in Cumbria (UK) and ranging in scale from 0.0071 to 2.7329 sq. km. Specifically, the rainfall to discharge response of these basins has been modelled with the RIV algorithm of the CAPTAIN Toolbox (Taylor et al., 2007 doi.org/10.1016/j.envsoft.2006.03.002). The resultant modelled characteristics of the rainfall-discharge dynamics are presented on an event-by-event basis.
description: Observed stream discharge data per unit micro-basin area (mm/15min) were modelled from observed rainfall data from a single raingauge within the micro-basin (mm/15min). 

The simulated discharge time-series (mm/15min) was modelled using the RIVSID algorithms of the CAPTAIN Toolbox (https://wp.lancs.ac.uk/captaintoolbox) that represent dynamics in the form of Transfer Functions. RIVSID is an abbreviation of ‘Refined Instrumental Variable System Identification’ algorithms. These algorithms are available for optimal RIV estimation of multiple-input, discrete-time and hybrid continuous-time Transfer Function models. Details of how to use RIVSID within the Matlab programming environment are given at: https://eprints.lancs.ac.uk/id/eprint/86904/4/CAPTAIN_Getting_Started.pdf. The derived Transfer Function characteristics, sometimes called ‘Dynamic Response Characteristics’ or DRCs, of Time Constant, Steady State Gain and Pure Time Delay. The Time Constant is the transfer time of the propagating flood wave (i.e., celerities) through the catchment (Cheng et al. 2023. Water Resources Research, 59: e2022WR033625, https://doi.org/10.1029/2022WR033625). The Steady State Gain a rainfall-runoff system is simply the simulated runoff coefficient (Chappell et al., 2006. For. Ecol. Manage. 224, 58-80, https://doi.org/10.1016/j.foreco.2005.12.008). The Pure Time Delay in simple terms is the time between a rainfall input and the first discharge response (Chappell et al., 2012. IAHS Publication 353, IAHS Press. 82-93, http://iahs.info/redbooks/a353/iahs_353_0082.pdf). Full and complex explanation of the Transfer Function identification is given within Box, G.E.P, Jenkins, G.M. and Reinsel, G.C. 2008. Time Series Analysis. John Wiley and Sons, pp746.

For the specific application of RIVSID, each discharge hydrograph event was modelled separately. The characteristics of each simulated discharge hydrograph were then derived from the simulated stream discharge data per unit micro-basin area (mm/15min) also within the Matlab programming environment. 

For fine technical details of how RIVSID was applied to the specific micro-basins, please see Mindham, D., Beven, K. and Chappell, N. 2023. Rainfall-streamflow response times for diverse upland UK micro-basins: quantifying hydrographs to identify the nonlinearity of storm response. Hydrology Research, 54(2): 233-244. https://doi.org/10.2166/nh.2023.115
DOI: 10.15468/dl.k3c5km
title: Occurrence Download

description: A dataset containing 988 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orthodontium gracile"
 ]
}

 The dataset includes 988 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016533-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.