cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25934/pr00008940
title: Data Challenge - correlation between antibiotic consumption patterns and the emergence of antimicrobial resistance (AMR) in specific bacterial strains in different regions

description: I am writing on behalf of my team at Makerere University School of Public Health to express our strong interest in participating in the Antimicrobial Resistance (AMR) Surveillance Open Data Re-use Data Challenge. As a team of researchers and public health practitioners, we are deeply committed to addressing the challenges posed by AMR, particularly in low and middle-income countries.
 We recognize that AMR is a critical global public health issue, and diseases such as tuberculosis, malaria, and HIV/AIDS, as well as common bacterial infections such as pneumonia and sepsis, are of significant concern. In low and middle-income countries, these diseases are especially prevalent, and the emergence of drug-resistant strains is creating significant challenges for healthcare providers and policymakers. Accurate surveillance and data collection are critical to identifying these strains, tracking their spread, and developing effective treatment and prevention strategies. As researchers, we are acutely aware of the gaps in AMR surveillance and data collection that need to be addressed. In many low and middle-income countries, there is a lack of reliable and accurate data on AMR prevalence and trends. This makes it difficult to develop and implement effective interventions, resulting in significant morbidity and mortality rates.
Participating in the Vivli AMR Surveillance Open Data Re-use Data Challenge would provide us with an opportunity to work with a diverse group of stakeholders to identify and address critical gaps in AMR surveillance and data collection. Our team has extensive experience in data analysis, research methodology, and public health, and we are confident that we can make a meaningful contribution to this important initiative. We look forward to the opportunity to participate in this critical effort and to collaborate with the Vivli team and other participants to develop innovative solutions to address the challenges posed by AMR.
DOI: 10.34740/kaggle/dsv/5715883
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.5517/ccdc.csd.cc2bnfn3
title: CCDC 2164595: Experimental Crystal Structure Determination

description: Related Article: Lukas Schifferer, Leon Hoppmann, Robin Groeters, Christian Mück-Lichtenfeld, Constantin G. Daniliuc, Olga García Mancheño|2023|Chem.Commun.|59|6032|doi:10.1039/D3CC00781B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/5715832
title: Cardio vascular diseases assessment
DOI: 10.35078/jwrsih
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Uberaba| Município: Araporã

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.25345/c5639kg04
title: MassIVE MSV000091982 - Human data for proteomic analysis of non-muscle invasive and muscle invasive bladder cancer highlights distinct subgroups
title: Urothelial bladder cancer ranks among the top ten malignancies worldwide, with approximately 20% of cases presenting as muscle-invasive disease. We present the proteomic profiling of a bladder cancer cohort comprising 79 cases, including treatment-naive cases of non-muscle invasive (NMIBC, N=17) and muscle-invasive bladder cancer (MIBC, N=51), as well as neoadjuvant-treated MIBC (N=11). Proteins were extracted from formalin-fixed, paraffin-embedded samples and analyzed using data-independent acquisition (DIA), yielding an average over 6,000 quantified proteins per sample. Our study found an enriched ECM and immune response signature in MIBC compared to NMIBC, with concomitant depletion of proteins involved in lipid metabolism and cell-cell adhesion. NMIBC presented two proteomic subgroups that correlate with histological grade and feature signatures of either cell adhesion or lipid/DNA metabolism. Treatment-naive MIBC presents three proteomic subgroups with signatures of metabolism, immune functionality, and ECM. The ECM and immune subgroups are enriched for markers of dendritic cells, macrophages and YAP1 signaling with the immune subgroup having additional enrichment of markers for cytotoxic T cells. Mechanistically, infiltration of CD8+ PD1+ positive cytotoxic T cells correlated with PD-L1 expression of MIBC, as demonstrated by multiplex immunofluorescence analysis. We further highlight increased endogenous proteolysis in MIBC alongside upregulation of matrix metalloproteases (MMPs), including MMP-14 whose expression silencing reduced T24 cell invasiveness in vitro. Genomic panel sequencing underlines prevalent FGFR3 mutations in NMIBC and prevalent TP53 mutations in MIBC while a genomic underpinning of the MIBC clusters remains elusive. Further proteogenomic data analysis yielded protein-level evidence for over1,300 single amino acid variants (SAAVs). The proteomes of neoadjuvant-treated, residual MIBC were like treatment-naive MIBC. Tumor-stroma interaction of MIBC was further investigated by proteomic analysis of patient-derived xenografts (PDX) of MIBC. In conclusion, our study adds to the comprehensive understanding of the proteome biology of early and advanced bladder cancer.
DOI: 10.5281/zenodo.7948130
title: Complete bacterial assemblies for 'Enterobacterales plasmid sharing amongst human bloodstream infections, livestock, wastewater, and waterway niches in Oxfordshire, UK'

description: Complete bacterial assemblies from the journal article 'Matlock, William, et al. "<em>Enterobacterales</em> plasmid sharing amongst human bloodstream infections, livestock, wastewater, and waterway niches in Oxfordshire, UK." <em>Elife</em> 12 (2023): e85302.' 'assemblies.zip' contains assemblies for <em>n</em>=1,458 isolates with circularised chromosomes and <em>n</em>=3,697 circularised plasmids. <strong>If you use this data please cite the journal article <em>and</em> the Zenodo DOI. </strong>
DOI: 10.5281/zenodo.7948129
title: Complete bacterial assemblies for 'Enterobacterales plasmid sharing amongst human bloodstream infections, livestock, wastewater, and waterway niches in Oxfordshire, UK'

description: Complete bacterial assemblies from the journal article 'Matlock, William, et al. "<em>Enterobacterales</em> plasmid sharing amongst human bloodstream infections, livestock, wastewater, and waterway niches in Oxfordshire, UK." <em>Elife</em> 12 (2023): e85302.' 'assemblies.zip' contains assemblies for <em>n</em>=1,458 isolates with circularised chromosomes and <em>n</em>=3,697 circularised plasmids. <strong>If you use this data please cite the journal article <em>and</em> the Zenodo DOI. </strong>
DOI: 10.5281/zenodo.7828463
title: Random bitstring generated by using quantum-dot based RNG

description: Random bitstring used in the manuscript of "Randomnhess enhancement is a quantum dot-based quantum random number generator by corrector functions"
DOI: 10.5281/zenodo.7828464
title: Random bitstring generated by using quantum-dot based RNG

description: Random bitstring used in the manuscript of "Randomnhess enhancement is a quantum dot-based quantum random number generator by corrector functions"
DOI: 10.5281/zenodo.7948242
title: Random bitstring generated by using quantum-dot based RNG

description: Random bitstring used in the manuscript of "Randomnhess enhancement is a quantum dot-based quantum random number generator by corrector functions"
DOI: 10.5281/zenodo.7864663
title: Species phylogeny, ecology and root traits as predictors of root exudate composition

description: In this study, a total of 65 neophytes (alien species introduced after 1500 A.D.), belonging to 51 genera and 25 families, occurring in the Czech Republic, were used. The species set represented plant families only from eudicots with Asteraceae, Brassicaceae Amaranthaceae, Polygonaceae and Fabaceae as the major families having 4 or more species. We measured different root morphological and biochemical traits (including exudate profiles) of these plant species grown in a controlled system.
DOI: 10.5281/zenodo.7864662
title: Species phylogeny, ecology and root traits as predictors of root exudate composition

description: In this study, a total of 65 neophytes (alien species introduced after 1500 A.D.), belonging to 51 genera and 25 families, occurring in the Czech Republic, were used. The species set represented plant families only from eudicots with Asteraceae, Brassicaceae Amaranthaceae, Polygonaceae and Fabaceae as the major families having 4 or more species. We measured different root morphological and biochemical traits (including exudate profiles) of these plant species grown in a controlled system.
DOI: 10.5517/ccdc.csd.cc2bw2jv
title: CCDC 2170977: Experimental Crystal Structure Determination

description: Related Article: Hsiao-Ci Huang, Ya-Chu Hsieh, Pei-Lun Lee, Chi-Chen Lin, Yeu-Shiuan Ho, Wei-Kai Shao, Chi-Tien Hsieh, Mu-Jeng Cheng, Yao-Ting Wu|2023|J.Am.Chem.Soc.|145|10304|doi:10.1021/jacs.3c01647
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bw2kw
title: CCDC 2170978: Experimental Crystal Structure Determination

description: Related Article: Hsiao-Ci Huang, Ya-Chu Hsieh, Pei-Lun Lee, Chi-Chen Lin, Yeu-Shiuan Ho, Wei-Kai Shao, Chi-Tien Hsieh, Mu-Jeng Cheng, Yao-Ting Wu|2023|J.Am.Chem.Soc.|145|10304|doi:10.1021/jacs.3c01647
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bz7p8
title: CCDC 2174020: Experimental Crystal Structure Determination

description: Related Article: Marie Deliaval, Ramasamy Jayarajan, Lars Eriksson, Kálmán J. Szabó|2023|J.Am.Chem.Soc.|145|10001|doi:10.1021/jacs.3c02852
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f364x
title: CCDC 2237398: Experimental Crystal Structure Determination

description: Related Article: Noah Holzer, Jiacheng Jin, Vladimir N. Nesterov, Jatan K. Sharma, Niloofar Zarrabi, Francis D’Souza, Prashanth K. Poddutoori|2023|Inorg.Chem.|62|7097|doi:10.1021/acs.inorgchem.3c00635
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f365y
title: CCDC 2237399: Experimental Crystal Structure Determination

description: Related Article: Noah Holzer, Jiacheng Jin, Vladimir N. Nesterov, Jatan K. Sharma, Niloofar Zarrabi, Francis D’Souza, Prashanth K. Poddutoori|2023|Inorg.Chem.|62|7097|doi:10.1021/acs.inorgchem.3c00635
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f3670
title: CCDC 2237401: Experimental Crystal Structure Determination

description: Related Article: Noah Holzer, Jiacheng Jin, Vladimir N. Nesterov, Jatan K. Sharma, Niloofar Zarrabi, Francis D’Souza, Prashanth K. Poddutoori|2023|Inorg.Chem.|62|7097|doi:10.1021/acs.inorgchem.3c00635
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f366z
title: CCDC 2237400: Experimental Crystal Structure Determination

description: Related Article: Noah Holzer, Jiacheng Jin, Vladimir N. Nesterov, Jatan K. Sharma, Niloofar Zarrabi, Francis D’Souza, Prashanth K. Poddutoori|2023|Inorg.Chem.|62|7097|doi:10.1021/acs.inorgchem.3c00635
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f36b3
title: CCDC 2237404: Experimental Crystal Structure Determination

description: Related Article: Noah Holzer, Jiacheng Jin, Vladimir N. Nesterov, Jatan K. Sharma, Niloofar Zarrabi, Francis D’Souza, Prashanth K. Poddutoori|2023|Inorg.Chem.|62|7097|doi:10.1021/acs.inorgchem.3c00635
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fgs3t
title: CCDC 2248526: Experimental Crystal Structure Determination

description: Related Article: Markus M. Katzenmayer, Felix Kracht, Cäcilia Maichle-Mössmer, Reiner Anwander|2023|Dalton Trans.|52|6273|doi:10.1039/D3DT00861D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fgs4v
title: CCDC 2248527: Experimental Crystal Structure Determination

description: Related Article: Markus M. Katzenmayer, Felix Kracht, Cäcilia Maichle-Mössmer, Reiner Anwander|2023|Dalton Trans.|52|6273|doi:10.1039/D3DT00861D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fgs5w
title: CCDC 2248528: Experimental Crystal Structure Determination

description: Related Article: Markus M. Katzenmayer, Felix Kracht, Cäcilia Maichle-Mössmer, Reiner Anwander|2023|Dalton Trans.|52|6273|doi:10.1039/D3DT00861D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fgs6x
title: CCDC 2248529: Experimental Crystal Structure Determination

description: Related Article: Markus M. Katzenmayer, Felix Kracht, Cäcilia Maichle-Mössmer, Reiner Anwander|2023|Dalton Trans.|52|6273|doi:10.1039/D3DT00861D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fgs7y
title: CCDC 2248530: Experimental Crystal Structure Determination

description: Related Article: Markus M. Katzenmayer, Felix Kracht, Cäcilia Maichle-Mössmer, Reiner Anwander|2023|Dalton Trans.|52|6273|doi:10.1039/D3DT00861D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fgs8z
title: CCDC 2248531: Experimental Crystal Structure Determination

description: Related Article: Markus M. Katzenmayer, Felix Kracht, Cäcilia Maichle-Mössmer, Reiner Anwander|2023|Dalton Trans.|52|6273|doi:10.1039/D3DT00861D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25345/c52b8vn6c
title: MassIVE MSV000091983 - Xenograft data for proteomic analysis of non-muscle invasive and muscle invasive bladder cancer highlights distinct subgroups
title: Urothelial bladder cancer ranks among the top ten malignancies worldwide, with approximately 20% of cases presenting as muscle-invasive disease. We present the proteomic profiling of a bladder cancer cohort comprising 79 cases, including treatment-naive cases of non-muscle invasive (NMIBC, N=17) and muscle-invasive bladder cancer (MIBC, N=51), as well as neoadjuvant-treated MIBC (N=11). Proteins were extracted from formalin-fixed, paraffin-embedded samples and analyzed using data-independent acquisition (DIA), yielding an average over 6,000 quantified proteins per sample. Our study found an enriched ECM and immune response signature in MIBC compared to NMIBC, with concomitant depletion of proteins involved in lipid metabolism and cell-cell adhesion. NMIBC presented two proteomic subgroups that correlate with histological grade and feature signatures of either cell adhesion or lipid/DNA metabolism. Treatment-naive MIBC presents three proteomic subgroups with signatures of metabolism, immune functionality, and ECM. The ECM and immune subgroups are enriched for markers of dendritic cells, macrophages and YAP1 signaling with the immune subgroup having additional enrichment of markers for cytotoxic T cells. Mechanistically, infiltration of CD8+ PD1+ positive cytotoxic T cells correlated with PD-L1 expression of MIBC, as demonstrated by multiplex immunofluorescence analysis. We further highlight increased endogenous proteolysis in MIBC alongside upregulation of matrix metalloproteases (MMPs), including MMP-14 whose expression silencing reduced T24 cell invasiveness in vitro. Genomic panel sequencing underlines prevalent FGFR3 mutations in NMIBC and prevalent TP53 mutations in MIBC while a genomic underpinning of the MIBC clusters remains elusive. Further proteogenomic data analysis yielded protein-level evidence for over1,300 single amino acid variants (SAAVs). The proteomes of neoadjuvant-treated, residual MIBC were like treatment-naive MIBC. Tumor-stroma interaction of MIBC was further investigated by proteomic analysis of patient-derived xenografts (PDX) of MIBC. In conclusion, our study adds to the comprehensive understanding of the proteome biology of early and advanced bladder cancer.
DOI: 10.5281/zenodo.7939402
title: E-PANNs checkpoint

description: The checkpoints of the pruned model (CNN14) when 50% of the filters from C7 to C12 convolutional layers are pruned. Please see Github link to live sound recognition demo using E-PANNs + the architecture of E-PANNs
DOI: 10.5281/zenodo.7939403
title: E-PANNs checkpoint

description: The checkpoints of the pruned model (CNN14) when 50% of the filters from C7 to C12 convolutional layers are pruned. Please see Github link to live sound recognition demo using E-PANNs + the architecture of E-PANNs
DOI: 10.21227/mb47-hf44
title: WebRTC data

description: aaaa