cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7963586
title: Research Compendium for White et al., Examining inputs of biogenic and oil-derived hydrocarbons in surface waters following the Deepwater Horizon oil spill

description: This compendium contains the data and code used in the White et al. paper describing the inputs of biogenic and oil-derived hydrocarbons in surface waters following the Deepwater Horizon oil spill. The data supplied are a cleaned and filtered subset of chemistry data from the DIVER database, which is the NOAA repository hosting environmental data related to the federal Natural Resource Damage Assessment (NRDA) dataset. See README for details.
DOI: 10.6084/m9.figshare.7963586.v1
title: Research Compendium for White et al., Examining inputs of biogenic and oil-derived hydrocarbons in surface waters following the Deepwater Horizon oil spill

description: This compendium contains the data and code used in the White et al. paper describing the inputs of biogenic and oil-derived hydrocarbons in surface waters following the Deepwater Horizon oil spill. The data supplied are a cleaned and filtered subset of chemistry data from the DIVER database, which is the NOAA repository hosting environmental data related to the federal Natural Resource Damage Assessment (NRDA) dataset. See README for details.
DOI: 10.6084/m9.figshare.7963643.v1
title: Accompanying Raw Data for the Paper: Adaptive smartphone-based sensor fusion for estimating competitive rowing kinematic metrics

description: Kinematic data collected via both a smartphone and differential GPS system on two rowed boats for several trials at different target stroke rates. See the included README for details as well as the related paper and software.<br>Paper: https://doi.org/10.31224/osf.io/nykuh<br><br>Software: https://gitlab.com/mechmotum/row_filter<br>
DOI: 10.1285/i22390359v36p255
title: Gerald Manley Hopkins's Ecosophical Lament

description: This essay focuses on Gerald Manley Hopkins's poetical lament in response to the ecosystem being attacked and devastated by the Victorian industrial revolution. The exploitation of natural resources resulting in the destruction of our environment emanates from a 'dominator' idea of economy as unlimited growth. My approach to Hopkins's poetry, in line with the Partnership Studies Group research work, is tied to Eisler's biocultural partnership-dominator model, Panikkar's ideas on ecosophy, Capra's contemporary systemic science, also in his interaction with Mancuso's investigations on plant biology. This methodological background is meant to go beyond traditional binary oppositions and focus more on interdisciplinary partnership perspectives, in their different representations of the natural world and life, including all so-called sentient and non-sentient beings. Hopkins was well aware of the importance of literature and art to address contemporary issues in order to inspire, educate and transform and did so through his poetry.
DOI: 10.6084/m9.figshare.7963541
title: Impacts of dam cascade on Botia superciliaris ichthyoplankton

description: Row data for CPUE of <i>Botia superciliaris</i> ichthyoplankton, Water temperature, Secchi depth, and River discharge <br>
DOI: 10.6084/m9.figshare.7963541.v1
title: Impacts of dam cascade on Botia superciliaris ichthyoplankton

description: Row data for CPUE of <i>Botia superciliaris</i> ichthyoplankton, Water temperature, Secchi depth, and River discharge <br>
DOI: 10.6084/m9.figshare.12877336
title: Additional file 2 of Composite transcriptome assembly of RNA-seq data in a sheep model for delayed bone healing

description: Additional file 2:Ovis aries composite transcriptome. A FASTA file containing the sequence of the longest transcript of each of the 13,987 ovine gene models. (GZ 10 MB)
DOI: 10.6084/m9.figshare.12877336.v1
title: Additional file 2 of Composite transcriptome assembly of RNA-seq data in a sheep model for delayed bone healing

description: Additional file 2:Ovis aries composite transcriptome. A FASTA file containing the sequence of the longest transcript of each of the 13,987 ovine gene models. (GZ 10 MB)
DOI: 10.6084/m9.figshare.12877354.v2
title: Additional file of Composite transcriptome assembly of RNA-seq data in a sheep model for delayed bone healing

description: Additional file of Composite transcriptome assembly of RNA-seq data in a sheep model for delayed bone healing
DOI: 10.6084/m9.figshare.7963355
title: <i>In vivo</i> Toxicity Assessment of Silver Nanoparticles in Homeostatic versus Regenerating Planarians

description: Silver nanoparticles (AgNPs) belong to the most commercialized nanomaterials, used in both consumer products and medical applications. Despite its omnipresence, in-depth knowledge on the potential toxicity of nanosilver is still lacking, especially for developing organisms. Research on vertebrates is limited due to ethical concerns, and planarians are an ideal invertebrate model to study the effects of AgNPs on stem cells and developing tissues <i>in vivo</i>, as regeneration mimics development by triggering massive stem cell proliferation. Our results revealed a strong interference of AgNPs with tissue- and neuroregeneration which was related to an altered stem cell cycle. The presence of a PVP-coating significantly influenced toxicity outcomes, leading to elevated DNA-damage and decreased stem cell proliferation. Non-coated AgNPs had an inhibiting effect on stem cell and early progeny numbers. Overall, regenerating tissues were more sensitive to AgNP toxicity, and careful handling and appropriate decision making is needed in AgNP applications for healing and developing tissues. We emphasize on the importance of AgNP characterization, as we showed that changes in physicochemical properties influence toxicity.
DOI: 10.6084/m9.figshare.7963478
title: Ontogenetic changes in the body plan of the sauropodomorph dinosaur Mussaurus patagonicus reveal shifts of locomotor stance during growth

description: Three-dimensional models of the sauropodomorph Mussaurus patagonicus (includes bones with spline models inside Blender files; requires free software to view; and convex-hull models as 3D objects in .ply format).<br>From Otero, Cuff et al., 2019:https://www.nature.com/articles/s41598-019-44037-1
DOI: 10.6084/m9.figshare.7963355.v1
title: <i>In vivo</i> Toxicity Assessment of Silver Nanoparticles in Homeostatic versus Regenerating Planarians

description: Silver nanoparticles (AgNPs) belong to the most commercialized nanomaterials, used in both consumer products and medical applications. Despite its omnipresence, in-depth knowledge on the potential toxicity of nanosilver is still lacking, especially for developing organisms. Research on vertebrates is limited due to ethical concerns, and planarians are an ideal invertebrate model to study the effects of AgNPs on stem cells and developing tissues <i>in vivo</i>, as regeneration mimics development by triggering massive stem cell proliferation. Our results revealed a strong interference of AgNPs with tissue- and neuroregeneration which was related to an altered stem cell cycle. The presence of a PVP-coating significantly influenced toxicity outcomes, leading to elevated DNA-damage and decreased stem cell proliferation. Non-coated AgNPs had an inhibiting effect on stem cell and early progeny numbers. Overall, regenerating tissues were more sensitive to AgNP toxicity, and careful handling and appropriate decision making is needed in AgNP applications for healing and developing tissues. We emphasize on the importance of AgNP characterization, as we showed that changes in physicochemical properties influence toxicity.
DOI: 10.6084/m9.figshare.7963346
title: MOESM2 of Discovery of non-invasive biomarkers for the diagnosis of endometriosis

description: Additional file 2. Results of TMT-based LC-MS/MS profiling with candidate scoring.
DOI: 10.1285/i22390359v36p267
title: Analysis of requests from Italian-speaking students of English and Spanish: reflection on pragmatic strategies in multilingual competence

description: The objective of this study is to provide empirical data that allows for reflection on the benefits of multilingual competence through the pragmatic analysis of the request strategies used by plurilingual speakers in three languages: Italian L1, Spanish L2 and English L2. Moreover, the present research also attempts to detect whether pragmatic transfer of L1 is found in L2 productions. This is a descriptive study conducted by triangulation of empirical data using qualitative and quantitative methodologies of research from a corpus of e-mails written by Italian university students. The requests formulated in the corpus of e-mails written in L1 and in L2 were studied in order to analyse the types of requests (direct, conventionally indirect, and non-conventionally indirect) and the perspective (sender oriented, receiver oriented, sender and receiver oriented and impersonal) in academic contexts with different social distances. The results of the analysis showed similarities and divergences in the informants' strategies and the presence of pragmatic transfer from L1 in the samples in L2 of both languages.
DOI: 10.6084/m9.figshare.7963196
title: CCDB_3700.jpg

description: A maximum intensity projection of a Caulobacter crescentus specimen at 0 degree tilt.
DOI: 10.6084/m9.figshare.7963196.v1
title: CCDB_3700.jpg

description: A maximum intensity projection of a Caulobacter crescentus specimen at 0 degree tilt.
DOI: 10.6084/m9.figshare.12877429.v3
title: Additional file of Development of the piggyBac transposable system for Plasmodium berghei and its application for random mutagenesis in malaria parasites

description: Additional file of Development of the piggyBac transposable system for Plasmodium berghei and its application for random mutagenesis in malaria parasites
DOI: 10.6084/m9.figshare.12877429.v2
title: Additional file of Development of the piggyBac transposable system for Plasmodium berghei and its application for random mutagenesis in malaria parasites

description: Additional file of Development of the piggyBac transposable system for Plasmodium berghei and its application for random mutagenesis in malaria parasites
DOI: 10.1285/i22390359v36p283
title: "The whole of Bengal is in revolt". A corpus based analysis of letters from the 1857-58 mutinies in India

description: Letter-writing is an ancient practice which has attracted the attention of literary scholars and historians over the centuries, since it has had a crucial role not only in facilitating the development of states and empires but also in destroying them. Specifically, the desire of exchanging and establishing information networks as well as to the complexity of feelings reflected in these texts have attracted much interest whereas the linguistic features characterising personal letters have received limited attention by corpora analysts. The purpose of this paper is therefore to extend extant research by investigating the linguistic choices made in a corpus of letters written during the 1857-1858 mutinies in India. The methodology is mixed. After a quantitative analysis of the key words, their collocations, their repeated phraseology/clusters and the clusters' recurring concordances, the emerging data is interpreted qualitatively with the integration of discourse analysis. The findings highlight how letters can be considered a hybrid genre in which the personal, the public, the historic and the social dimensions intertwine with reciprocal influence.
DOI: 10.6084/m9.figshare.7962902
title: Fission yeast cells grow approximately exponentially

description: How the rate of cell growth is influenced by cell size is a fundamental question of cell biology. The simple model that cell growth is proportional to cell size, based on the proposition that larger cells have proportionally greater synthetic capacity than smaller cells, leads to the prediction that the rate of cell growth increases exponentially with cell size. However, other modes of cell growth, including bilinear growth, have been reported. The distinction between exponential and bilinear growth has been explored in particular detail in the fission yeast <i>Schizosaccharomyces pombe</i>. We have revisited the mode of fission yeast cell growth using high-resolution time-lapse microscopy and find, as previously reported, that these two growth models are difficult to distinguish both because of the similarity in shapes between exponential and bilinear curves over the two-fold change in length of a normal cell cycle and because of the substantial biological and experimental noise inherent to these experiments. Therefore, we contrived to have cells grow more than twofold, by holding them in G2 for up to 8 h. Over this extended growth period, in which cells grow up to 5.5-fold, the two growth models diverge to the point that we can confidently exclude bilinear growth as a general model for fission yeast growth. Although the growth we observe is clearly more complicated than predicted by simple exponential growth, we find that exponential growth is a robust approximation of fission yeast growth, both during an unperturbed cell cycle and during extended periods of growth.
DOI: 10.6084/m9.figshare.7962902.v1
title: Fission yeast cells grow approximately exponentially

description: How the rate of cell growth is influenced by cell size is a fundamental question of cell biology. The simple model that cell growth is proportional to cell size, based on the proposition that larger cells have proportionally greater synthetic capacity than smaller cells, leads to the prediction that the rate of cell growth increases exponentially with cell size. However, other modes of cell growth, including bilinear growth, have been reported. The distinction between exponential and bilinear growth has been explored in particular detail in the fission yeast <i>Schizosaccharomyces pombe</i>. We have revisited the mode of fission yeast cell growth using high-resolution time-lapse microscopy and find, as previously reported, that these two growth models are difficult to distinguish both because of the similarity in shapes between exponential and bilinear curves over the two-fold change in length of a normal cell cycle and because of the substantial biological and experimental noise inherent to these experiments. Therefore, we contrived to have cells grow more than twofold, by holding them in G2 for up to 8 h. Over this extended growth period, in which cells grow up to 5.5-fold, the two growth models diverge to the point that we can confidently exclude bilinear growth as a general model for fission yeast growth. Although the growth we observe is clearly more complicated than predicted by simple exponential growth, we find that exponential growth is a robust approximation of fission yeast growth, both during an unperturbed cell cycle and during extended periods of growth.
DOI: 10.6084/m9.figshare.7962860
title: Local Use of Anti-Thyroid Drugs in Sheffield

description: Retrospective review of 1st appointment endocrinology clinic notes and letters. Population: All patients at Sheffield Children's Hospital (SCH) who had been prescribed Carbimazole in the previous 5 years.Conclusion: Agranulocytosis is rare, but potentially fatal. Documentation about the risk of agranulocytosis secondary to Carbimazole at SCH is poor.<br> <br><br>
DOI: 10.6084/m9.figshare.7962839
title: Paediatric Hyperthyroidism - UK Survey of Clinicians

description: Objective: We aimed to document current practice in the medical management of paediatric hyperthyroidism in the UK and compare to international recommendations. Design: A 27 question online survey was distributed via an electronic newsletter in August 2018. Participants: Members of the British Society for Paediatric Endocrinology and Diabetes. Measurements: We collected information about anti-thyroid drug (ATD) preference, treatment duration, criteria used to monitor full blood count (FBC), management of neutropaenia, agranulocytosis screening and patient education. Results: Carbimazole is favoured by 98% of respondents and a ‘dose titration’ regimen preferred over ‘block and replace’ (65% versus 29%). TRAbs (Thyroid Receptor Antibodies) are used for diagnostic purposes by 85% and by 33% to look for evidence of disease remission. The majority (81%) treat for a minimum of 2 years before considering a trial off ATD. All respondents reported that they ‘always/usually’ warn their patients about the risk of agranulocytosis before starting ATD, but written information is ‘rarely/never’ provided by 63%. Sore throat (98%) and fever (92%) are the most commonly cited symptoms used to alert a patient to possible agranulocytosis. FBC is measured prior to treatment by 65% and measured periodically during treatment by 70%. Conclusions: The management of paediatric hyperthyroidism with ATDs in the UK is not consistent with all international recommendations because a block and replace ATD regimen remains widely used. TRAbs are utilised at presentation, but under-used for detecting disease remission. National consensus guidelines and written patient information may refine the management of paediatric patients on ATDs.<b></b><br>
DOI: 10.6084/m9.figshare.7962860.v1
title: Local Use of Anti-Thyroid Drugs in Sheffield

description: Retrospective review of 1st appointment endocrinology clinic notes and letters. Population: All patients at Sheffield Children's Hospital (SCH) who had been prescribed Carbimazole in the previous 5 years.Conclusion: Agranulocytosis is rare, but potentially fatal. Documentation about the risk of agranulocytosis secondary to Carbimazole at SCH is poor.<br> <br><br>
DOI: 10.26049/asp78-2-2020-03/1
title: First species of Surazomus (Schizomida: Hubbardiidae) from North America illuminate biogeography of short-tailed whipscorpions in the New World
DOI: 10.6084/m9.figshare.12877447
title: Additional file 2 of A cell spot microarray method for production of high density siRNA transfection microarrays

description: Additional file 2:Supplemental Table 1. List of cell lines tested with the CSMA method. 92 adherent cell types were tested for compatibility with the CSMA cell patterning method. Four different cell dissociation methods were tested in parallel and protocol allowing maximally efficient cell patterning was optimized for all tested cell types. (XLS 24 KB)
DOI: 10.6084/m9.figshare.7962839.v1
title: Paediatric Hyperthyroidism - UK Survey of Clinicians

description: Objective: We aimed to document current practice in the medical management of paediatric hyperthyroidism in the UK and compare to international recommendations. Design: A 27 question online survey was distributed via an electronic newsletter in August 2018. Participants: Members of the British Society for Paediatric Endocrinology and Diabetes. Measurements: We collected information about anti-thyroid drug (ATD) preference, treatment duration, criteria used to monitor full blood count (FBC), management of neutropaenia, agranulocytosis screening and patient education. Results: Carbimazole is favoured by 98% of respondents and a ‘dose titration’ regimen preferred over ‘block and replace’ (65% versus 29%). TRAbs (Thyroid Receptor Antibodies) are used for diagnostic purposes by 85% and by 33% to look for evidence of disease remission. The majority (81%) treat for a minimum of 2 years before considering a trial off ATD. All respondents reported that they ‘always/usually’ warn their patients about the risk of agranulocytosis before starting ATD, but written information is ‘rarely/never’ provided by 63%. Sore throat (98%) and fever (92%) are the most commonly cited symptoms used to alert a patient to possible agranulocytosis. FBC is measured prior to treatment by 65% and measured periodically during treatment by 70%. Conclusions: The management of paediatric hyperthyroidism with ATDs in the UK is not consistent with all international recommendations because a block and replace ATD regimen remains widely used. TRAbs are utilised at presentation, but under-used for detecting disease remission. National consensus guidelines and written patient information may refine the management of paediatric patients on ATDs.<b></b><br>
DOI: 10.6084/m9.figshare.7962815
title: Paratydeidae Tanytydeus pogrebnyaki k-18364 Leg III holotype

description: Hitachi KP-HD20A on Zeiss Imager A2 microscope <br>100x oil immersion<br> Original image stacks for descriptions of fossil mites of the family Paratydeidae from the late Eocene Rovno Amber. <br>Two species: <br>Scolotydaeus vlaskini n. sp.Housed in the amber collection of the Sсhmalhausen Institute of zoology NAS of Ukraine, Kiev, with collection number SIZK K‑1462 and Tanytydeus pogrebnyaki n. sp.<br>Housed in the amber collection of the Schmalhausen Institute of zoology NAS of Ukraine, Kiev, with collection number SIZK K‑18364. Compound microscopes Nikon E-800 with water immersion optics (40x and 60x) and Zeiss AxioImager A2 with dry (40x, 63x) and oil immersion optics (100x). Brightfield, polarized and differential interference contrast and incident illumination were used. Stacks of images, comprising multiple focal planes, were obtained with digital cameras Olympus OM-D E-M10II on Nikon microscope, Zeiss Axiocam 506 color and Hitachi KP-HD20A on Zeiss microscope. Stacks were corrected for colour, brightness and noise with Adobe Lightroom, then exported to JPEG format. <br>Combined images prepared with Helicon Focus 6.8.0, using algorithms A (mostly) and B with subsequent manual addition of significant details from the individual focal planes.
DOI: 10.6084/m9.figshare.12877453
title: Additional file 4 of A cell spot microarray method for production of high density siRNA transfection microarrays

description: Additional file 4:Supplemental data 1. Results summary table listing the CSMA results of the functional analysis of the GPCR targeting siRNAs. (XLS 1 MB)
DOI: 10.6084/m9.figshare.12877471.v7
title: Additional file of A cell spot microarray method for production of high density siRNA transfection microarrays

description: Additional file of A cell spot microarray method for production of high density siRNA transfection microarrays
DOI: 10.6084/m9.figshare.7962824
title: Paratydeidae Tanytydeus pogrebnyaki k-18364 tarsus I holotype

description: Hitachi KP-HD20A on Zeiss Imager A2 microscope <br>100x oil immersion<br> Original image stacks for descriptions of fossil mites of the family Paratydeidae from the late Eocene Rovno Amber. <br>Two species: <br>Scolotydaeus vlaskini n. sp.Housed in the amber collection of the Sсhmalhausen Institute of zoology NAS of Ukraine, Kiev, with collection number SIZK K‑1462 and Tanytydeus pogrebnyaki n. sp.<br>Housed in the amber collection of the Schmalhausen Institute of zoology NAS of Ukraine, Kiev, with collection number SIZK K‑18364. Compound microscopes Nikon E-800 with water immersion optics (40x and 60x) and Zeiss AxioImager A2 with dry (40x, 63x) and oil immersion optics (100x). Brightfield, polarized and differential interference contrast and incident illumination were used. Stacks of images, comprising multiple focal planes, were obtained with digital cameras Olympus OM-D E-M10II on Nikon microscope, Zeiss Axiocam 506 color and Hitachi KP-HD20A on Zeiss microscope. Stacks were corrected for colour, brightness and noise with Adobe Lightroom, then exported to JPEG format. <br>Combined images prepared with Helicon Focus 6.8.0, using algorithms A (mostly) and B with subsequent manual addition of significant details from the individual focal planes.
DOI: 10.6084/m9.figshare.12877471.v9
title: Additional file of A cell spot microarray method for production of high density siRNA transfection microarrays

description: Additional file of A cell spot microarray method for production of high density siRNA transfection microarrays