cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.qcnh2q
title: Occurrence Download

description: A dataset containing 4369 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Africa, Antarctica, Asia, Oceania, Europe, North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (January, February, March, April, May, June, July, August, September, October, November, December)",
 "OccurrenceStatus is Present",
 "TaxonKey is Panthera onca (Linnaeus, 1758)",
 "Year 2000-2024"
 ]
}

 The dataset includes 4369 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105755-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/cmef-xp39
title: Specimen images accessed on 28-8-2024
DOI: 10.15468/dl.5t9wyu
title: Occurrence Download

description: A dataset containing 1553 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Colius striatus J.F.Gmelin, 1789"
 ]
}

 The dataset includes 1553 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105757-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kgc59n
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bhutanitis mansfieldi (Riley, 1939)"
 ]
}

 The dataset includes 87 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105758-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5fbbd2
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bhutanitis ludlowi Gabriel, 1942"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105759-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j676dx
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Colius castanotus J.Verreaux & É.Verreaux, 1855"
 ]
}

 The dataset includes 51 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105760-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z2gmjp
title: Occurrence Download

description: A dataset containing 2530 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Mustela erminea Linnaeus, 1758",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2005"
 ]
}

 The dataset includes 2530 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105761-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10373432
title: Data and code for 'Age truncation due to disease shrinks metapopulation viability for amphibians'

description: This repository provides all data and R code from the analysis for the following paper:

Heard, G.W., Scroggie, M.P., Hollanders, M., and Scheele, B.C. (in press). Age truncation due to disease shrinks metapopulation viability for amphibians. Journal of Applied Ecology.  

The data are provided as a series of .csv files. A GRD file is provided for the landscape rasters. R code is provided separately for each of the following components:

1. A script to complete regression modelling of age structure data for populations of the focal species pre- and post-Bd, plus estimation of adult survival rates from the age structure data using the 'catch curve' approach ('Age_structure_analysis.R').

2. A script to generate the sample landscapes used for simulations of metapopulation dynamics for the pre- and post-Bd time periods ('Derive_landscape_rasters.R').

3. A script with functions for simulating metapopulation dynamics with the aid of the STEPS R package ('STEPS_model.R').

4. A script to run the metapopulation simulations across all the demographic and connectivity scenarios, where connectivity scenarios are defined by the sample landscapes ('Run_STEPS_simulations.R'). 

5. A script to fit logistic regression models to the outcomes of the metapopulation simulations (extinction versus persistence) ('Metapop_sims_analysis_GLM.R').

6. A script to fit multivariate normal hypervolumes to the outcomes of the metapopulation simulations (extinction versus persistence) ('Metapop_sims_analysis_MVNH.R').

7. A script to generate each of the figures in the manuscript, plus Table 2 which requires post-hoc data compilation ('Generate_figures.R'). 

In combination, the data files and scripts allow all analyses from the paper to be reproduced.
DOI: 10.5281/zenodo.10373433
title: Data and code for 'Disease shrinks metapopulation viability for amphibians'

description: This repository provides all data and R code from the analysis presented in the following paper:

Heard, G.W., Scroggie, M.P., Hollanders, M., and Scheele, B.C. (in review). Disease-induced mortality shrinks metapopulation viability for amphibians.  

The data are provided as a series of .csv files. A GRD file is provided for the landscape rasters. R code is provided separately for each of the following components:

1. A script to complete regression modelling of age structure data for populations of the focal species pre- and post-Bd, plus estimation of adult survival rates from the age structure data using the 'catch curve' approach ('Age_structure_analysis.R').

2. A script to generate the sample landscapes used for simulations of metapopulation dynamics for the pre- and post-Bd epochs ('Derive_landscape_rasters.R').

3. A script with functions for simulating metapopulation dynamics with the aid of the STEPS R package ('STEPS_model.R').

4. A script to run the metapopulation simulations across all the demographic and connectivity scenarios, where connectivity scenarios are defined by the sample landscapes ('Run_STEPS_simulations.R'). 

5. A script to fit logistic regression models to the outcomes of the metapopulation simulations (extinction versus persistence) ('Metapop_sims_analysis_GLM.R').

6. A script to fit multivariate normal hypervolumes to the outcomes of the metapopulation simulations (extinction versus persistence) ('Metapop_sims_analysis_MVNH.R').

In combination, the data files and scripts allow all analyses from the paper to be reproduced.
DOI: 10.5281/zenodo.10457229
title: Data and code for 'Age truncation due to disease shrinks metapopulation viability for amphibians'

description: This repository provides all data and R code from the analysis for the following paper:

Heard, G.W., Scroggie, M.P., Hollanders, M., and Scheele, B.C. (in press). Age truncation due to disease shrinks metapopulation viability for amphibians. Journal of Applied Ecology.  

The data are provided as a series of .csv files. A GRD file is provided for the landscape rasters. R code is provided separately for each of the following components:

1. A script to complete regression modelling of age structure data for populations of the focal species pre- and post-Bd, plus estimation of adult survival rates from the age structure data using the 'catch curve' approach ('Age_structure_analysis.R').

2. A script to generate the sample landscapes used for simulations of metapopulation dynamics for the pre- and post-Bd time periods ('Derive_landscape_rasters.R').

3. A script with functions for simulating metapopulation dynamics with the aid of the STEPS R package ('STEPS_model.R').

4. A script to run the metapopulation simulations across all the demographic and connectivity scenarios, where connectivity scenarios are defined by the sample landscapes ('Run_STEPS_simulations.R'). 

5. A script to fit logistic regression models to the outcomes of the metapopulation simulations (extinction versus persistence) ('Metapop_sims_analysis_GLM.R').

6. A script to fit multivariate normal hypervolumes to the outcomes of the metapopulation simulations (extinction versus persistence) ('Metapop_sims_analysis_MVNH.R').

7. A script to generate each of the figures in the manuscript, plus Table 2 which requires post-hoc data compilation ('Generate_figures.R'). 

In combination, the data files and scripts allow all analyses from the paper to be reproduced.
DOI: 10.15468/dl.jknz28
title: Occurrence Download

description: A dataset containing 2530 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Mustela erminea Linnaeus, 1758",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2005"
 ]
}

 The dataset includes 2530 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105762-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t6kx6q
title: Occurrence Download

description: A dataset containing 2530 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Mustela erminea Linnaeus, 1758",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2005"
 ]
}

 The dataset includes 2530 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105763-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e5c3n5
title: Occurrence Download

description: A dataset containing 2530 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Mustela erminea Linnaeus, 1758",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2005"
 ]
}

 The dataset includes 2530 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105764-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26860525
title: Historical Photoreceptor Fundamentals for Circadian Stimulus Model.xlsx

description: Photoreceptor fundamental action spectra for use with published versions of the Circadian Stimulus model.
DOI: 10.6084/m9.figshare.26860525.v1
title: Historical Photoreceptor Fundamentals for Circadian Stimulus Model.xlsx

description: Photoreceptor fundamental action spectra for use with published versions of the Circadian Stimulus model.
DOI: 10.15468/dl.zwh284
title: Occurrence Download

description: A dataset containing 2530 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Mustela erminea Linnaeus, 1758",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2005"
 ]
}

 The dataset includes 2530 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105767-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tavpkp
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is New Zealand",
 "Geometry POLYGON((165.96501 -47.76969,174.5168 -47.76969,174.5168 -40.30806,165.96501 -40.30806,165.96501 -47.76969))",
 "HasGeospatialIssue is false",
 "TaxonKey is Araujia Brot."
 ]
}

 The dataset includes 18 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105768-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wxbrn4
title: Occurrence Download

description: A dataset containing 249076 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "SpeciesKey is Sturnella neglecta Audubon, 1844",
 "HasCoordinate is TRUE",
 "Year is 2023"
 ]
}

 The dataset includes 249076 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105766-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25384/sage.6139328.v1
title: Supplementary Material, Updated_Supple_files_758760 – Indirect Colonial Rule Undermines Support for Democracy: Evidence From a Natural Experiment in Namibia

description: Supplementary Material, Updated_Supple_files_758760 for Indirect Colonial Rule Undermines Support for Democracy: Evidence From a Natural Experiment in Namibia by Marie Lechler and Lachlan McNamee in Comparative Political Studies
DOI: 10.15468/dl.nv4hbp
title: Occurrence Download

description: A dataset containing 175 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is mabik_cr",
 "TaxonKey is Raphidopus ciliatus Stimpson, 1858"
 ]
}

 The dataset includes 175 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105769-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25384/sage.6159518
title: Data analyses EUP-17-1385 III -Supplemental material for Deciding about the unknown: The effect of party and ideological cues on forming opinions about the European Union

description: Supplemental material, Data analyses EUP-17-1385 III for Deciding about the unknown: The effect of party and ideological cues on forming opinions about the European Union by Mariano Torcal, Sergio Martini and Lluis Orriols in European Union Politics
DOI: 10.25384/sage.6176624
title: Supplemental Material, Oilterror - Oil and Terrorism: Uncovering the Mechanisms

description: Supplemental Material, Oilterror for Oil and Terrorism: Uncovering the Mechanisms by Chia-yi Lee in Journal of Conflict Resolution
DOI: 10.5281/zenodo.10952520
title: Reference genome of Digitaria radicosa

description: The reference genome and annotation data of Digitaria radicosa.

Publication: A chromosome-scale genome assembly of Timorese crabgrass (Digitaria radicosa): a useful genomic resource for the Poaceae. doi: https://doi.org/10.1101/2024.05.14.594087
DOI: 10.5281/zenodo.10952521
title: Reference genome of Digitaria radicosa

description: The reference genome and annotation data of Digitaria radicosa.

Publication: A chromosome-scale genome assembly of Timorese crabgrass (Digitaria radicosa): a useful genomic resource for the Poaceae. doi: https://doi.org/10.1101/2024.05.14.594087
DOI: 10.5281/zenodo.13382085
title: Reference genome of Digitaria radicosa

description: The reference genome and annotation data of Digitaria radicosa.

Publication: A chromosome-scale genome assembly of Timorese crabgrass (Digitaria radicosa): a useful genomic resource for the Poaceae. doi: https://doi.org/10.1101/2024.05.14.594087
DOI: 10.15468/dl.vjngzf
title: Occurrence Download

description: A dataset containing 114 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Conservación de la agrobiodiversidad de la Milpa Tarahumara, Chihuahua"
 ]
}

 The dataset includes 114 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105770-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.96dqvn
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phreatia gillespiei Kores"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076768-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25517224
title: Gun Violence - All Shootings

description: The data on all shootings is from https://www.gunviolencearchive.org/ . This dataset on all shootings for the period 2014-2023 was provided on March 25, 2024 by the Data Manager (Ms. Sharon Williams) at the Gun Violence Archive (https://www.gunviolencearchive.org/) on a data request. Minimal curation was done on this data – the date variable was split into year, month and day. The variables are self-explanatory.<br><br>For information of how this data is collected, go to: https://www.gunviolencearchive.org/explainer<br>
DOI: 10.15468/dl.9e2hmg
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plantago tatarica Decne."
 ]
}

 The dataset includes 22 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076769-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25517278
title: Online Survey Response Form

description: Spreadsheet with the online data collection.
DOI: 10.6084/m9.figshare.25517278.v1
title: Online Survey Response Form

description: Spreadsheet with the online data collection.
DOI: 10.15468/dl.rmm6sb
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pluchea sordida (Vatke) Oliv. & Hiern"
 ]
}

 The dataset includes 136 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076770-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6mz3gt
title: Occurrence Download

description: A dataset containing 408 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polygala karensium Kurz"
 ]
}

 The dataset includes 408 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076773-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cp7zcu
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phreatia giluwensis Ormerod"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076774-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f7e72z
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinanga fractiflexa Hodel"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076772-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.re87ey
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phymaspermum aphyllum Magee & Ruiters"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076771-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8attp2
title: Occurrence Download

description: A dataset containing 1779 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plantago tenuiflora Waldst. & Kit."
 ]
}

 The dataset includes 1779 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076775-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k8jnct
title: Occurrence Download

description: A dataset containing 1377 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Russian Federation, Ukraine, Germany, Poland, Switzerland, Austria, Czechia, Slovakia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Brachythecium glareosum (Bruch ex Spruce) Schimp."
 ]
}

 The dataset includes 1377 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076776-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y53fft
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pluchea succulenta Mesfin"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076778-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ymajx
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinanga furfuracea Blume"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076779-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ztvuw
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phreatia gladiata (A.Rich.) Lindl."
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076780-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.