cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/pbm89t98xg.1
title: Aluminum Life Cycle Inventory Dataset for China

description: This dataset has been established to address the lack of a comprehensive lifecycle inventory dataset for China's aluminum industry, a sector of critical importance due to its environmental and economic implications. It comprises 38 data sources, 216 processes and 2193 flows of China’s aluminum industry. The data collection process was rigorously conducted, adhering to the rules of data traceability and transparency. This dataset contributes significantly to the aluminum sector in China, enhancing the accuracy of LCA studies and supporting more informed and sustainable decisions.
DOI: 10.17632/3kdf6btwkg.1
title: LDHU3_03.0160

description: Hypothetical protein - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/4wkc6mvf9g.1
title: Isotopic insights from carpological remains: one of the first datasets for the Italian Bronze Age

description: The dataset encompasses 180 carpological remains from various crop types, including Vicia faba, Triticum mococcum/dicoccum, Triticum aestivum, and Hordeum vulgare. These remains are derived from four archaeological sites situated in northern and central Italy, dating back to the Early-Middle Bronze Age: the pile-dwelling of Ledro, the settlement of S. Maria in Belverde, Grotta Nuova, and Grotta di Pastena.
The data are useful to reconstruct agricultural practices of ancient communities, filling partially the lack of data that characterized the Italian Bronze age. The aim of the work is to return a regional picture through the isotopic values obtained, becoming a pattern for future analyses. Prior to conducting stable isotope analysis, the samples underwent archaeobotanical studies. Microscopic analysis of seeds was carried out, aided by modern comparative collections and illustrated atlases. Seeds from Ledro are unburned, while those from S. Maria in Belverde, Grotta Nuova, and Grotta di Pastena are burned.
Given the absence of an established protocol for stable isotope analysis on carpological remains, two different methods were employed to assess whether chemical pre-treatment affected the isotopic signatures of the grains. Twenty samples underwent the ABA pre-treatment protocol (Fraser et al., 2013b), while the remaining seeds were individually crushed in a mortar, with the resulting powder fed into the isotope ratio mass spectrometer. There are no defined criteria for rejecting plant isotope measurements based on C/N ratios, so we adhered to the guidelines proposed by Vaiglova et al. (2014). To ensure the reliability of measurements, each grain was measured three times, following the recommendations of Mueller-Bieniek et al. (2019) and O’Connell et al. (2019).
The preparation of carpological remains took place at the Centre of Molecular Anthropology for Ancient DNA Studies at the University of Rome “Tor Vergata.” Carbon and nitrogen stable isotope ratios were measured in a double run using a Delta Plus XP isotope ratio mass spectrometer coupled with a Flash 1112 Elemental Analyser via a Conflow IV interface (Thermo Scientific Milan, Italy) at the Food Quality and Nutrition Department, Traceability Unit – Fondazione Edmund Mach. Estimations of manuring rates were determined through comparison with various methodological approaches (e.g., Bogaard et al., 2007, 2013; Kanstrup et al., 2014; Styring et al., 2016; Treasure et al., 2016). The watering status of seeds was established through carbon values, following Ferrio et al. (2005) and Wallace et al. (2013).
In conclusion, the obtained results show how legumes and cereals have been manured and watered by humans; nevertheless, it seems that in settlements crops have been more subjected to human management; conversely in cave contexts agricultural practices were less significant.
DOI: 10.17632/86x733xkb8.2
title: Dataset of Arabic Spam and Ham Tweets

description: The data was analyzed in this article. Please cite it or cite the data article:
Kaddoura, S., Alex, S. A., Itani, M., Henno, S., AlNashash, A., & Hemanth, D. J. (2023). Arabic spam tweets classification using deep learning. Neural Computing and Applications, 1-14.

The data are collected from Twitter using Twitter API between January 27, 2021, and March 10, 2021. The download tweet information is Tweet ID, DateTime, URL, Tweet Text, User Name, Location, Replied Tweet ID, Replied Tweet User ID, Replied Tweet Username, Retweet Count, Favorite Count, and Favorited.

The dataset contains two file.
The first file is "Dataset of Arabic Spam and Ham Tweets.xlsx.": This file contains the original collected dataset. The dataset contains 13241 records. Each record represents a tweet. The tweets are labeled either Ham or Spam. Ham means non-spam tweet. There are 1924 Spam tweets and 11299 Ham tweets. The tweets are unique i.e. there are no repeated tweets records.

The second file is "Augmented_SpamHamTweets.xlsx": on this dataset, contextual augmentation was applied to increase the number of the minority class which is the "spam" class. This file will help while applying machine learning to the dataset to get better and more reliable results. This dataset now contains 11030 ham tweets and 15128 spam tweets.
DOI: 10.17632/pghzmkknm6.1
title: RAW DATA SPSS AND QUESTIONNAIRE (MALAY AND ENGLISH VERSION)

description: Data about the socioeconomic demographic of 200 families living in high-risk drug environments located in East Coast states of Peninsular Malaysia – survey questionnaire through face-to-face interviews in April 2021
DOI: 10.17632/98ph95fw6n.1
title: Transcriptomic profiling of EAE astrocytes and microglia +/- B cell depletion

description: ACSA-2+ astrocytes or CD11b+ microglia/macrophages were isolated from the EAE (MOG 1-125) spinal cord 3 days after animals reached a clinical score of 2.5 when animals were given either anti-CD19/anti-B220 or control antibody. Each treatment group consists of 3-4 RNA samples. Sequencing was performed using TruSeq Stranded Total Gold. Batch effect mitigation was done to remediate batch effects across two sequencing batches. Limma-voom was utilized for differential expression analysis. Each file contains Gene ID, estimated log2 fold change (logFC), average log2 expression (AveExpr), test statistic (t), raw P-value (P.value), FDR adjusted P-value (adj.P.value), and B-statistic (B). "Comparison 1" file is B cell depleted EAE astrocytes vs control EAE astrocytes. "Comparison 2" file is B cell depleted EAE astrocytes vs healthy control astrocytes. "Comparison 3" file is control EAE astrocytes vs healthy control astrocytes. "Comparison 4" file is B cell depleted EAE microglia vs control EAE microglia. "Comparison 5" file is B cell depleted EAE microglia vs healthy control microglia. "Comparison 6" file is control EAE microglia vs healthy control microglia. "BatchEff_PCA" file has PCA plots of the two sequencing batches showing Cell Type 1 (astrocytes) and Cell Type 2 (microglia).
DOI: 10.17632/4nsxr382ty.1
title: LINF_220018600

description: Guanine nucleotide-binding protein subunit beta-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/zhm4kn6sfn.1
title: Test-bed Dataset for Optical-Based In-Body Communications Research

description: This dataset contains measurement data from a test-bed specifically for optical-based in-body communication research. The dataset includes two files: a free-space channel and biological tissues using a fresh pork meat sample in an ex-vivo experiment. The data (in .xlsx format) presents the impact of controlling the Near-infrared LED's current and adjusting the photodetector's gain setting on the received optical power (in Watt, dBm, and power density). In this dataset, two types of receivers were used for the mentioned test-bed: optical power meter and photodetector amplifier module. The optical power meter can control its attenuation, but in this sense, we used 0 dB and -4.30 dB to match the photodetector reading. The measurement using a photodetector amplifier module was obtained by converting the photodetector's output voltage read from the oscilloscope based on the provided datasheet. However, it should be normalized by multiplying it with a specific value. The free space test comprises 5 cm, 10 cm, and 15 cm of optical distance. The sample test used two kinds of biological tissues: pure fat and muscle tissues, where each sample had a 15 mm thickness. This dataset provides valuable information regarding the standardized test-bed for researchers working in optical-based in-body communication studies, especially when using the near-infrared spectrum 810 nm, which was considered good for penetrating the human body. This dataset was also a good reference for researchers working on Optical Wireless Power Transfer (OWPT) in a free-space setting or through the human body.
DOI: 10.17632/xfbns858rz.1
title: LINF_220018500

description: translation initiation factor IF-2; Leishmania infantum (strain JPCM5)
DOI: 10.17632/8fpy6t5sgk.1
title: LINF_220017300

description: Lactamase B domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/nwhs4sknn4.1
title: LINF_220017600

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/rnfk7xpwbg.1
title: Data for: Influence of Translation on Perceived Metaphor Features: Quality, Aptness, Metaphoricity and Familiarity

description: Data for: Influence of Translation on Perceived Metaphor Features: Quality, Aptness, Metaphoricity and Familiarity
The Appendix
SPSS Data Files
DOI: 10.17632/rmjsjjr9cw.1
title: Cell Cycle Imaging 2: Mitotic chromosomes are self-entangled and disentangle through a Topoisomerase II-dependent two stage exit from mitosis

description: The topological state of chromosomes determines their mechanical properties, dynamics, and function. Recent work indicated that interphase chromosomes are largely free of entanglements. Here, we use Hi-C, polymer simulations and multi-contact 3C, and propose that, in contrast, mitotic chromosomes are self-entangled. We explore how a mitotic self-entangled state is converted into an unentangled interphase state during mitotic exit. Most mitotic entanglements are removed during anaphase/telophase, with remaining ones removed during early G1, in a Topoisomerase II-dependent process. Polymer models suggest a two-stage disentanglement pathway: first, decondensation of mitotic chromosomes with remaining condensin loops produces entropic forces that bias Topoisomerase II activity towards decatenation. At the second stage, the loops are released, and formation of new entanglements is prevented by lower Topoisomerase II activity, allowing the establishment of unentangled and territorial G1 chromosomes. When mitotic entanglements are not removed, in experiment and models, a normal interphase state cannot be acquired. 

Original microscopy images supporting this dataset are included in this repository.
DOI: 10.17632/45gp9scht8.1
title: Detection of Asian genetic components in autochthonous human Echinococcus multilocularis infections from endemic Warmia-Masuria (north-eastern Poland)

description: Raw FSA files and normalised EmsB profiles of metacestodes extracted from patients of the University Centre for Maritime and Tropical Medicine in Gdynia treated for alveolar echinococcosis and living in Warmia-Masuria (north-eastern Poland). R script to calculate and visualise a UPGMA dendrogram with a genetic distance threshold. R script to perform Sammon’s nonlinear mapping with k-means clustering.
DOI: 10.17632/t3sg6hd3kw.1
title: Metal–Ligand Redox in Layered Oxide Cathodes for Li-ion Batteries

description: Data used to generate figures.
DOI: 10.17632/byjwn79mdh.1
title: LINF_220019000

description: Ribonucleotide reductase subunit; Leishmania infantum (strain JPCM5)
DOI: 10.17632/d3229x96n6.1
title: LDHU3_16.0350

description: Ion transport protein; Leishmania donovani (HU3 strain)
DOI: 10.17632/bgkscw9ns9.1
title: A dynamic actin cytoskeleton is required to prevent constitutive VDAC-dependent MAPK-signalling and aberrant lipid homeostasis.

description: These original data support the publication "A dynamic actin cytoskeleton is required to prevent constitutive VDAC-dependent MAPK-signalling and aberrant lipid homeostasis." by Davis et al. published in iScience.
DOI: 10.17632/kfz79p6jfj.1
title: LDHU3_16.0370

description: Protein kinase; Leishmania donovani (HU3 strain)
DOI: 10.17632/hpzbk2rcxs.1
title: Vascularization of PEGylated Fibrin Hydrogels Increases Proliferation of Human iPSC-Cardiomyocytes

description: . The goal of this study was to test whether vascular cells or a formed vascular network in a fibrin-based hydrogel would alter the proliferation of human iPSC-derived cardiomyocytes. First, vascular network formation in a slowly degrading PEGylated fibrin hydrogel was optimized by altering the cell ratio of human umbilical vein endothelial cells (HUVEC) to human dermal fibroblasts (hDF), the inclusion of growth factors, and the total cell concentration. An endothelial to fibroblast ratio of 5:1 and a total cell concentration of 1.1x106 cells/mL without additional growth factors generated robust vascular networks while minimizing the number of cells required. Using this optimized system, human iPSC-derived cardiomyocytes were cultured on hydrogels without vascular cells, hydrogels with unorganized encapsulated vascular cells, or hydrogels with encapsulated vascular cells organized into networks for 7 days. Cardiomyocyte proliferation and gene expression were assayed following 7 days of culture on the hydrogels. The presence of vascular cells in the hydrogel, whether unorganized or in vascular networks, significantly increased cardiomyocyte proliferation compared to an acellular hydrogel. Hydrogels with unorganized vascular cells resulted in lower cardiomyocyte maturity evidenced by decreased expression of cardiac troponin t (TNNT2), myosin light chain 7 (MYL7), and phospholamban (PLN) compared to hydrogels without vascular cells and hydrogels with vascular networks.
DOI: 10.17632/ws3bbcndfw.1
title: Data and analysis files for Parker, Kelly et al "Evaluating the Effects of Cognitive Fatigue on Youth’s Energy Intake"

description: The underlying data in SPSS and the SPSS syntax file, plus the manuscript and supplemental material, are supplied for Parker, Kelly et al, "Evaluating the Effects of Cognitive Fatigue on Youth’s Energy Intake" submitted to Eating Behavior.
DOI: 10.17632/f5h2d3wmn7.1
title: Groundwater and surface water data of Ganga Delta

description: The present study attempts to characterize the strontium signatures and exchanges between surface water and multi-depth groundwater in and around the tropical, Himalayan Ganga River mega-delta. This work is an amalgamation of previously published datasets and newly collected data from surface and groundwater reservoirs which are predicted as potential strontium sources. Rainwater, seawater, river water, estuarine water and groundwater are considered as the different reservoirs within the delta where continuous cycling between the surface and subsurface waters is clearly observable. Strontium concentration data along with other solute geochemistry such as calcium, magnesium and salinity are reviewed from various previous literatures. Additionally, groundwater is sampled and analysed in two distinctly different parts of the delta. The first cluster of groundwater stations is distributed methodically in Nadia District, located inland in the northern part of the delta. The second set of groundwater stations is placed in 5 locations on the Bakkhali Island of Sundarbans, situated at the southern end. In total 13 observation wells, categorized into four depth ranges ̶ D1 (14 to 25 m bgl), D2 (30 to 50 m bgl), D3 (115 m bgl), and D4 (333 m bgl) and 2 monitoring wells were installed. D1 and D2 wells are installed in each of the five locations. D3 has two wells at locations B and D while D4 has only one well for observation at location A. This aids in a spatial understanding of the study area. For a similar reason, the assimilated groundwater data is geographically classified into Eastern and Western Bengal Basin whereas hydrostratigraphically, following our previous continuing study by Chakraborty et al., 2022 it is categorized under Type-I, Type-II and Type-III aquifers. Depth-wise variation is furthermore scrutinized to identify varying surface, shallow surface and deeper subsurface processes prevailing in both inland and coastal aquifers. Again, data variability from coastal reservoirs to further inland areas is used to demarcate a spatial change in the dominant hydrogeochemical process controlling water geochemistry and strontium evolution in the delta.
DOI: 10.17632/nyjggrfb2v.1
title: Link Prediction via Imperfect Coloring

description: Dataset: https://github.com/he-tiantian/Attributed-Graph-Data
DOI: 10.17632/kgrdcv7dx5.1
title: LDHU3_16.0480

description: XRN exonuclease; Leishmania donovani (HU3 strain)
DOI: 10.17632/z5njcjrbyx.1
title: LDHU3_16.0440

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/3f3wz69xr9.1
title: LDHU3_16.0430

description: Oxoglutarate/iron-dependent dioxygenase; Leishmania donovani (HU3 strain)
DOI: 10.17632/9c47vwvtss.4
title: Dataset on electrocardiograph, sleep and metabolic function of male type 2 diabetes mellitus

description: This dataset provides a collection of 24-h electrocardiograph (ECG) signals, ECG analysis results, sleep quality assessment and clinical indicators of metabolic function acquired from 60 male type 2 diabetes mellitus (T2DM) inpatients. Upon admission, a fasting blood draw and urinary sample were obtained the next morning for routine glucose, lipid and renal panels. Subjects were also involved in investigation for diabetic complications. On the second day of hospitalization, subjects were monitored in hospital for 24-h ECG starting at 10 pm. Subjective sleep quality was assessed by Pittsburgh Sleep Quality Index (PSQI). Objective sleep quality and sleep staging were assessed by ECG-based cardiopulmonary coupling (CPC) analysis.
DOI: 10.17632/d9xwzjsprp.1
title: LDHU3_16.0550

description: 60S ribosomal protein L21 | eL21; Leishmania donovani (HU3 strain)
DOI: 10.17632/37p2fn84wm.1
title: LDHU3_16.0530

description: Fucose kinase | Pyrophosphorylase | FKP; Leishmania donovani (HU3 strain)
DOI: 10.17632/z8d7zf3xnf.1
title: Changes in local interaction rules during ontogeny underlie the evolution of collective behavior

description: Data and computational analysis for the manuscript "Changes in local interaction rules during ontogeny underlie the evolution of collective behavior" by Alexandra Paz, Karla J. Holt, Anik Clarke, Briana Abraham, Alex C. Keene, Erik R. Duboué, Yaouen Fily, and Johanna E. Kowalko.
DOI: 10.17632/z8d7zf3xnf.2
title: Changes in local interaction rules during ontogeny underlie the evolution of collective behavior

description: Data and computational analysis for the manuscript "Changes in local interaction rules during ontogeny underlie the evolution of collective behavior" by Alexandra Paz, Karla J. Holt, Anik Clarke, Briana Abraham, Alex C. Keene, Erik R. Duboué, Yaouen Fily, and Johanna E. Kowalko.
DOI: 10.17632/9gzfbdcmhv.2
title: Immunoblots: Mitotic chromosomes are self-entangled and disentangle through a Topoisomerase II-dependent two stage exit from mitosis

description: The topological state of chromosomes determines their mechanical properties, dynamics, and function. Recent work indicated that interphase chromosomes are largely free of entanglements. Here, we use Hi-C, polymer simulations and multi-contact 3C, and propose that, in contrast, mitotic chromosomes are self-entangled. We explore how a mitotic self-entangled state is converted into an unentangled interphase state during mitotic exit. Most mitotic entanglements are removed during anaphase/telophase, with remaining ones removed during early G1, in a Topoisomerase II-dependent process. Polymer models suggest a two-stage disentanglement pathway: first, decondensation of mitotic chromosomes with remaining condensin loops produces entropic forces that bias Topoisomerase II activity towards decatenation. At the second stage, the loops are released, and formation of new entanglements is prevented by lower Topoisomerase II activity, allowing the establishment of unentangled and territorial G1 chromosomes. When mitotic entanglements are not removed, in experiment and models, a normal interphase state cannot be acquired. 

Original western blot images supporting this dataset are included in this repository.
DOI: 10.17632/t4kwhr99vw.2
title: Texture Imaging: Mitotic chromosomes are self-entangled and disentangle through a Topoisomerase II-dependent two stage exit from mitosis

description: The topological state of chromosomes determines their mechanical properties, dynamics, and function. Recent work indicated that interphase chromosomes are largely free of entanglements. Here, we use Hi-C, polymer simulations and multi-contact 3C, and propose that, in contrast, mitotic chromosomes are self-entangled. We explore how a mitotic self-entangled state is converted into an unentangled interphase state during mitotic exit. Most mitotic entanglements are removed during anaphase/telophase, with remaining ones removed during early G1, in a Topoisomerase II-dependent process. Polymer models suggest a two-stage disentanglement pathway: first, decondensation of mitotic chromosomes with remaining condensin loops produces entropic forces that bias Topoisomerase II activity towards decatenation. At the second stage, the loops are released, and formation of new entanglements is prevented by lower Topoisomerase II activity, allowing the establishment of unentangled and territorial G1 chromosomes. When mitotic entanglements are not removed, in experiment and models, a normal interphase state cannot be acquired. 

Original microscopy images supporting this dataset are included in this repository.
DOI: 10.17632/ws3bbcndfw.2
title: Data and analysis files for Parker, Kelly et al "Evaluating the Effects of Cognitive Fatigue on Youth’s Energy Intake"

description: The underlying data in SPSS and the SPSS syntax file, plus the manuscript and supplemental material, are supplied for Parker, Kelly et al, "Evaluating the Effects of Cognitive Fatigue on Youth’s Energy Intake" submitted to Eating Behavior.
DOI: 10.17632/ccd42j5jxr.2
title: Confocal Imaging: Mitotic chromosomes are self-entangled and disentangle through a Topoisomerase II-dependent two stage exit from mitosis

description: The topological state of chromosomes determines their mechanical properties, dynamics, and function. Recent work indicated that interphase chromosomes are largely free of entanglements. Here, we use Hi-C, polymer simulations and multi-contact 3C, and propose that, in contrast, mitotic chromosomes are self-entangled. We explore how a mitotic self-entangled state is converted into an unentangled interphase state during mitotic exit. Most mitotic entanglements are removed during anaphase/telophase, with remaining ones removed during early G1, in a Topoisomerase II-dependent process. Polymer models suggest a two-stage disentanglement pathway: first, decondensation of mitotic chromosomes with remaining condensin loops produces entropic forces that bias Topoisomerase II activity towards decatenation. At the second stage, the loops are released, and formation of new entanglements is prevented by lower Topoisomerase II activity, allowing the establishment of unentangled and territorial G1 chromosomes. When mitotic entanglements are not removed, in experiment and models, a normal interphase state cannot be acquired. 

Original microscopy images supporting this dataset are included in this repository.