cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zc4ym9
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Vaccinium stenophyllum Steud.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 35 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014342-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28348377
title: Additional file 2 of ZBiotics ameliorates T2DM-induced histopathological damage in liver, kidney and adipose tissues by modulating the NOD-like receptor signaling in Wistar rats

description: Additional file 2. XLSX 4277 KB
DOI: 10.6084/m9.figshare.28348377.v1
title: Additional file 2 of ZBiotics ameliorates T2DM-induced histopathological damage in liver, kidney and adipose tissues by modulating the NOD-like receptor signaling in Wistar rats

description: Additional file 2. XLSX 4277 KB
DOI: 10.6084/m9.figshare.28348380
title: Additional file 3 of ZBiotics ameliorates T2DM-induced histopathological damage in liver, kidney and adipose tissues by modulating the NOD-like receptor signaling in Wistar rats

description: Additional file 3. XLSX 7674 KB
DOI: 10.6084/m9.figshare.28348380.v1
title: Additional file 3 of ZBiotics ameliorates T2DM-induced histopathological damage in liver, kidney and adipose tissues by modulating the NOD-like receptor signaling in Wistar rats

description: Additional file 3. XLSX 7674 KB
DOI: 10.15468/dl.s58ac2
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Erythroxylum areolatum L.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 35 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014343-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28348385.v1
title: Additional file 2 of Acid sphingomyelinase modulates anxiety-like behavior likely through toll-like receptor signaling pathway

description: Supplementary Material 2: Dataset S1 Up and down regulation of DEGs identified by Asm-knockout
DOI: 10.6084/m9.figshare.28348385
title: Additional file 2 of Acid sphingomyelinase modulates anxiety-like behavior likely through toll-like receptor signaling pathway

description: Supplementary Material 2: Dataset S1 Up and down regulation of DEGs identified by Asm-knockout
DOI: 10.6084/m9.figshare.28348388
title: Additional file 3 of Acid sphingomyelinase modulates anxiety-like behavior likely through toll-like receptor signaling pathway

description: Supplementary Material 3: Dataset S2 GO enrichment results of DEGs
DOI: 10.6084/m9.figshare.28348388.v1
title: Additional file 3 of Acid sphingomyelinase modulates anxiety-like behavior likely through toll-like receptor signaling pathway

description: Supplementary Material 3: Dataset S2 GO enrichment results of DEGs
DOI: 10.6084/m9.figshare.28348391
title: Additional file 4 of Acid sphingomyelinase modulates anxiety-like behavior likely through toll-like receptor signaling pathway

description: Supplementary Material 4: Dataset S3 KEGG enrichment results of DEGs
DOI: 10.6084/m9.figshare.28348401
title: Additional file 3 of Sequence-based GWAS in 180,000 German Holstein cattle reveals new candidate variants for milk production traits

description: Additional file 3. Table S5. Fine-mapping and functional annotation of all credible sets for MY. Table S6. Fine-mapping and functional annotation of all credible sets for FY. Table S7. Fine-mapping and functional annotation of all credible sets for PY.
DOI: 10.6084/m9.figshare.28348404
title: Additional file 4 of Sequence-based GWAS in 180,000 German Holstein cattle reveals new candidate variants for milk production traits

description: Additional file 4. Table S8. List of variants with PPC ≥ 0.05 and their functional annotation.
DOI: 10.6084/m9.figshare.28348404.v1
title: Additional file 4 of Sequence-based GWAS in 180,000 German Holstein cattle reveals new candidate variants for milk production traits

description: Additional file 4. Table S8. List of variants with PPC ≥ 0.05 and their functional annotation.
DOI: 10.15468/dl.c5tjg7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Erythroxylum bequaertii Standl.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014344-250127130748423/datasets/export for details.
DOI: 10.6084/m9.figshare.28348461
title: Additional file 1 of Single-cell profiling reveals a reduced epithelial defense system, decreased immune responses and the immune regulatory roles of different fibroblast subpopulations in chronic atrophic gastritis

description: Supplementary Material 1: Additional file 1: Figure S1. Identification of potentially pathogenic epithelial clusters of CAG. (A) Feature plot showing the expression levels of atrophic gastritis susceptibility genes among different cell subtypes. (B) Violin plots showing the expression levels of atrophic gastritis susceptibility genes in different epithelial subtypes. (C) Violin plots comparing the differences in the gene signature scores of atrophic gastritis susceptibility genes between CAG and control samples. (D) Boxplots comparing the differences in the gene signature scores of pEMT and cycle between CAG and control samples. P values were calculated via the two-sided Wilcoxon test. ****, p &lt; 0.0001; ***, p &lt; 0.001; **, p &lt; 0.01; *, p &lt; 0.05.
DOI: 10.6084/m9.figshare.28348464
title: Additional file 2 of Single-cell profiling reveals a reduced epithelial defense system, decreased immune responses and the immune regulatory roles of different fibroblast subpopulations in chronic atrophic gastritis

description: Supplementary Material 2: Additional file 2: Figure S2. Expression of classic markers in each T-cell subcluster and inferred TF activities of T-cell subclusters. (A) Bubble plot depicting the average expression levels and cellular fractions of selected stress-related heat shock marker genes in 3 defined T-cell subclusters. (B) Bubble plot depicting the average expression levels and percentages of exhaustion-related marker genes in 3 defined T-cell subclusters. (C) Bubble plot depicting the average expression levels and cellular fractions of effector function-related marker genes in 3 defined T-cell clusters. (D) Heatmap showing TF activity among different T-cell subclusters. (E) Heatmap showing TF activity among different T-cell subclusters in the CAG and control groups. CD4+ Tex: exhausted CD4+ T-cell subtype, CD8+ Tef: CD8+ T effector cell subtype, CD8+ Tsr: CD8+ T stress response.
DOI: 10.6084/m9.figshare.28348464.v1
title: Additional file 2 of Single-cell profiling reveals a reduced epithelial defense system, decreased immune responses and the immune regulatory roles of different fibroblast subpopulations in chronic atrophic gastritis

description: Supplementary Material 2: Additional file 2: Figure S2. Expression of classic markers in each T-cell subcluster and inferred TF activities of T-cell subclusters. (A) Bubble plot depicting the average expression levels and cellular fractions of selected stress-related heat shock marker genes in 3 defined T-cell subclusters. (B) Bubble plot depicting the average expression levels and percentages of exhaustion-related marker genes in 3 defined T-cell subclusters. (C) Bubble plot depicting the average expression levels and cellular fractions of effector function-related marker genes in 3 defined T-cell clusters. (D) Heatmap showing TF activity among different T-cell subclusters. (E) Heatmap showing TF activity among different T-cell subclusters in the CAG and control groups. CD4+ Tex: exhausted CD4+ T-cell subtype, CD8+ Tef: CD8+ T effector cell subtype, CD8+ Tsr: CD8+ T stress response.
DOI: 10.6084/m9.figshare.28348461.v1
title: Additional file 1 of Single-cell profiling reveals a reduced epithelial defense system, decreased immune responses and the immune regulatory roles of different fibroblast subpopulations in chronic atrophic gastritis

description: Supplementary Material 1: Additional file 1: Figure S1. Identification of potentially pathogenic epithelial clusters of CAG. (A) Feature plot showing the expression levels of atrophic gastritis susceptibility genes among different cell subtypes. (B) Violin plots showing the expression levels of atrophic gastritis susceptibility genes in different epithelial subtypes. (C) Violin plots comparing the differences in the gene signature scores of atrophic gastritis susceptibility genes between CAG and control samples. (D) Boxplots comparing the differences in the gene signature scores of pEMT and cycle between CAG and control samples. P values were calculated via the two-sided Wilcoxon test. ****, p &lt; 0.0001; ***, p &lt; 0.001; **, p &lt; 0.01; *, p &lt; 0.05.
DOI: 10.6084/m9.figshare.28348467
title: Additional file 3 of Single-cell profiling reveals a reduced epithelial defense system, decreased immune responses and the immune regulatory roles of different fibroblast subpopulations in chronic atrophic gastritis

description: Supplementary Material 3: Additional file 3: Figure S3. Changes in the expression of TLRs, the chemokine system and metabolic activities in macrophages. (A) Violin plot showing the differences in the gene signature scores of chemokines and Toll-like receptors between CAG and control samples. P values were calculated via the two-sided Wilcoxon test. ****, p &lt; 0.0001. (B) Proportion of TLR-expressing C1Q+ macrophages in CAG and control samples. (C) Feature plot showing TLR expression levels in C1Q+ macrophages in CAG samples. (D) Feature plot showing the expression levels of MMPs and TIMPs in C1Q+ macrophages in CAG samples. (E) Bubble plot showing metabolic activity analysis of C1Q+ macrophages between CAG and control samples. The circle size and color darkness both represent the scaled metabolic score. The red on the bubble plot shows the top increased metabolic pathways, and the blue shows the top decreased metabolic pathways. (F) Boxplots showing the metabolic scores of nitrogen metabolism and glycerophospholipid metabolism. P values were calculated via the two-sided Wilcoxon test. ns, not significant, **, P &lt; 0.01 and ****, P &lt; 0.0001. (G) Feature plot showing LDLR expression levels in C1Q+ macrophages between CAG and control samples.
DOI: 10.6084/m9.figshare.28348467.v1
title: Additional file 3 of Single-cell profiling reveals a reduced epithelial defense system, decreased immune responses and the immune regulatory roles of different fibroblast subpopulations in chronic atrophic gastritis

description: Supplementary Material 3: Additional file 3: Figure S3. Changes in the expression of TLRs, the chemokine system and metabolic activities in macrophages. (A) Violin plot showing the differences in the gene signature scores of chemokines and Toll-like receptors between CAG and control samples. P values were calculated via the two-sided Wilcoxon test. ****, p &lt; 0.0001. (B) Proportion of TLR-expressing C1Q+ macrophages in CAG and control samples. (C) Feature plot showing TLR expression levels in C1Q+ macrophages in CAG samples. (D) Feature plot showing the expression levels of MMPs and TIMPs in C1Q+ macrophages in CAG samples. (E) Bubble plot showing metabolic activity analysis of C1Q+ macrophages between CAG and control samples. The circle size and color darkness both represent the scaled metabolic score. The red on the bubble plot shows the top increased metabolic pathways, and the blue shows the top decreased metabolic pathways. (F) Boxplots showing the metabolic scores of nitrogen metabolism and glycerophospholipid metabolism. P values were calculated via the two-sided Wilcoxon test. ns, not significant, **, P &lt; 0.01 and ****, P &lt; 0.0001. (G) Feature plot showing LDLR expression levels in C1Q+ macrophages between CAG and control samples.
DOI: 10.6084/m9.figshare.28348470
title: Additional file 4 of Single-cell profiling reveals a reduced epithelial defense system, decreased immune responses and the immune regulatory roles of different fibroblast subpopulations in chronic atrophic gastritis

description: Supplementary Material 4: Additional file 4: Figure S4. Gene expression of different fibroblast subpopulations and changes in the proportions of different fibroblast subpopulations between CAG and control tissues. (A) Heatmap of the top 10 genes of the cluster-defining DEGs among all fibroblasts from the control and chronic astrophic gastritis cell populations. Red on the heatmap shows the most highly upregulated genes, and blue shows the most downregulated genes. (B) Proportions of fibroblast subclusters in CAG and control samples. (C) Chemokine and cytokine molecule expression levels in different fibroblast subclusters of CAG. (D) Feature plot showing CCR5 expression in CD8+ T cells.
DOI: 10.6084/m9.figshare.28348473
title: Additional file 5 of Single-cell profiling reveals a reduced epithelial defense system, decreased immune responses and the immune regulatory roles of different fibroblast subpopulations in chronic atrophic gastritis

description: Supplementary Material 5: Additional file 5: Figure S5. Representative CSF1-CSF1R interaction in the CAG and control tissue microenvironments. Representative mIHC image of the CSF1-CSF1R interaction. CAG tissue sections were stained with CSF1 (green), CSF1R (red), DCN (purple), and DAPI for DNA (blue).
DOI: 10.6084/m9.figshare.28348473.v1
title: Additional file 5 of Single-cell profiling reveals a reduced epithelial defense system, decreased immune responses and the immune regulatory roles of different fibroblast subpopulations in chronic atrophic gastritis

description: Supplementary Material 5: Additional file 5: Figure S5. Representative CSF1-CSF1R interaction in the CAG and control tissue microenvironments. Representative mIHC image of the CSF1-CSF1R interaction. CAG tissue sections were stained with CSF1 (green), CSF1R (red), DCN (purple), and DAPI for DNA (blue).
DOI: 10.6084/m9.figshare.28348476.v1
title: Additional file 6 of Single-cell profiling reveals a reduced epithelial defense system, decreased immune responses and the immune regulatory roles of different fibroblast subpopulations in chronic atrophic gastritis

description: Supplementary Material 6: Additional file 6: Table S1. Sample information.
DOI: 10.6084/m9.figshare.28348470.v1
title: Additional file 4 of Single-cell profiling reveals a reduced epithelial defense system, decreased immune responses and the immune regulatory roles of different fibroblast subpopulations in chronic atrophic gastritis

description: Supplementary Material 4: Additional file 4: Figure S4. Gene expression of different fibroblast subpopulations and changes in the proportions of different fibroblast subpopulations between CAG and control tissues. (A) Heatmap of the top 10 genes of the cluster-defining DEGs among all fibroblasts from the control and chronic astrophic gastritis cell populations. Red on the heatmap shows the most highly upregulated genes, and blue shows the most downregulated genes. (B) Proportions of fibroblast subclusters in CAG and control samples. (C) Chemokine and cytokine molecule expression levels in different fibroblast subclusters of CAG. (D) Feature plot showing CCR5 expression in CD8+ T cells.
DOI: 10.6084/m9.figshare.28348476
title: Additional file 6 of Single-cell profiling reveals a reduced epithelial defense system, decreased immune responses and the immune regulatory roles of different fibroblast subpopulations in chronic atrophic gastritis

description: Supplementary Material 6: Additional file 6: Table S1. Sample information.
DOI: 10.15468/dl.54km3w
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Erythroxylum guatemalense Lundell)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014346-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28348520
title: Additional file 1 of Sex differences in the neuroinflammatory signaling pathway: effect of miRNAs on fatty acid synthesis in microglia

description: Supplementary material 1.
DOI: 10.6084/m9.figshare.28348520.v1
title: Additional file 1 of Sex differences in the neuroinflammatory signaling pathway: effect of miRNAs on fatty acid synthesis in microglia

description: Supplementary material 1.
DOI: 10.6084/m9.figshare.28348524
title: Additional file 1 of Noninvasive oxygenation and ventilation strategies for viral acute respiratory failure: a comprehensive systematic review and meta-analysis

description: Additional file 1: Table S1 can be found at Study Summary COVID-19 ventilation.
DOI: 10.6084/m9.figshare.28348524.v1
title: Additional file 1 of Noninvasive oxygenation and ventilation strategies for viral acute respiratory failure: a comprehensive systematic review and meta-analysis

description: Additional file 1: Table S1 can be found at Study Summary COVID-19 ventilation.
DOI: 10.15468/dl.asfav6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ascochyta brassicae-junceae Sawada"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014347-250127130748423/datasets/export for details.
DOI: 10.6084/m9.figshare.28348527
title: Additional file 2 of Noninvasive oxygenation and ventilation strategies for viral acute respiratory failure: a comprehensive systematic review and meta-analysis

description: Additional file 2: Table S2 can be found at TableS2.
DOI: 10.6084/m9.figshare.28348527.v1
title: Additional file 2 of Noninvasive oxygenation and ventilation strategies for viral acute respiratory failure: a comprehensive systematic review and meta-analysis

description: Additional file 2: Table S2 can be found at TableS2.
DOI: 10.15468/dl.pdshua
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Erythroxylum confusum Britton)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 25 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014345-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28348533
title: Additional file 1 of A novel protein encoded by porcine circANKRD17 activates the PPAR pathway to regulate intramuscular fat metabolism

description: Additional file 1: Table S1A. The primer sequences used in our study. Table S1B. The protein-coding circRNA candidates identified with the ribosome profiling sequencing. Table S1C. Lipid metabolites identified in porcine longissimus dorsi muscles. Table S1D. Differential lipid metabolites in porcine longissimus dorsi muscles between LT and LW piglets.
DOI: 10.6084/m9.figshare.28348533.v1
title: Additional file 1 of A novel protein encoded by porcine circANKRD17 activates the PPAR pathway to regulate intramuscular fat metabolism

description: Additional file 1: Table S1A. The primer sequences used in our study. Table S1B. The protein-coding circRNA candidates identified with the ribosome profiling sequencing. Table S1C. Lipid metabolites identified in porcine longissimus dorsi muscles. Table S1D. Differential lipid metabolites in porcine longissimus dorsi muscles between LT and LW piglets.
DOI: 10.6084/m9.figshare.28348538
title: Additional file 4 of EGFR inhibition augments the therapeutic efficacy of the NAT10 inhibitor Remodelin in Colorectal cancer

description: Supplementary Material 4: Additional file 4: Supplementary Table 4. Mass spectrometry identification of NAT10 ubiquitination sites.
DOI: 10.6084/m9.figshare.28348538.v1
title: Additional file 4 of EGFR inhibition augments the therapeutic efficacy of the NAT10 inhibitor Remodelin in Colorectal cancer

description: Supplementary Material 4: Additional file 4: Supplementary Table 4. Mass spectrometry identification of NAT10 ubiquitination sites.
DOI: 10.6084/m9.figshare.28348557
title: Additional file 2 of Enhancing microbial predator–prey detection with network and trait-based analyses

description: Supplementary Tables: Supplementary Table S1: Count data Cercozoa. Table S2: Count data Green Algae. Table S3: Count data Ochrophytes. Table S4. Sampling sites. Table S5. Diatom primers and tags designed for this study*. Table S6. Green algae primers and tags designed for this study*. Table S7. Primers used in this study. Table S8. Cercozoa, green algae, and ochrophytes included in the internal standards of each run. Table S9. Cercozoa cultures established in this study. Table S10. Algae and ochrophyte cultures established in this study. Table S11. One-way ANOVA comparisons of alpha diversity indices — OTU richness, exponential Shannon, and inverse Simpson— across polar biocrusts samples (N = 116) from Svalbard, the Antarctic Peninsula, and Continental Antarctica. Results presented separately for Cercozoa, green algae, and ochrophytes. The table displays F-values with degrees of freedom (df) for the nominator and denominator, along with associated p-values derived from one-way ANOVA comparisons. Table S12. PERMANOVA results for taxonomic groups across environmental factors. Analysis of polar biocrusts samples (N = 116) from Svalbard, the Antarctic Peninsula, and Continental Antarctica. Table S13. Network topological features, including inter- and intra-domain co-occurrences for Cercozoa, green algae, and ochrophytes. N = 116. Table S14. Summary of the ANCOVA models for predator counts. Table S15. Summary of the ANCOVA models for algae counts. Table S16. Summary of co-occurrence and correlation interactions identified in Cercozoan-algae HMSC networks across models.