cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/wohbmy
title: Pictures of Aleurocanthus spiniferus from French outbreak in 2023

description: A set of pictures of different stages of development of Aleurocanthus spiniferus. Specimens were collected from the first outbreak of this species in France in 2023.
DOI: 10.57745/tomgz6
title: Microtomoscan of Clay-Sulfate Rock before Exposure to KCl in the Desiccator for 62 Days, Part 3

description: microtomoscan
DOI: 10.57745/tusczf
title: Overview of the nutritional composition of infant flours commercialized worldwide in 2021

description: Infancy is a key window of development during which diet plays an essential role. From the age of 4/6 months, breast milk and/or infant formulas are no longer sufficient to cover all of infants nutritional needs. This period is therefore marked by the gradual introduction of complementary foods such as processed cereal-based foods (namely infant flours) to begin the dietary diversification. Infant flours are a commonly consumed food globally, especially in southern regions. The aim of this dataset was to collect lists of ingredients and nutritional values of infant flours on the world market. Data collection took place from December 2020 to April 2021, involving direct information extraction from product packaging, brand websites, and research articles. The dataset specifically focuses on processed cereal-based products composed of simple or mixed cereals that must be reconstituted with milk or other appropriate liquids, and cereals with added protein-rich foods that must be reconstituted with water or protein-free liquids. A total of 96 infant flours were collected for their ingredient lists and nutritional values. The nutritional values are systematically presented for 100g of powder or for 100 kcal. The main sources of the raw materials used in these flours were also identified from the ingredient lists. This dataset serves as an invaluable tool for the development of infant flours, offering insights into the composition and nutritional values of these products.
DOI: 10.57745/vcc5kv
title: Data associated with the article "Ridge polariton laser: different from a semiconductor edge-emitting laser"

description: This archive contains all raw datasets corresponding to each figure of the article "Ridge polariton laser: different from a semiconductor edge-emitting laser", by H. Souissi et al., published in Phys. Rev. Applied 18, 044029 (2022) (doi:10.1103/PhysRevApplied.18.044029) The arxiv version of the article is available here: https://arxiv.org/abs/2201.04348 A sub-folder is associated to each figure (including the figures of the Supplemental Document), with the .csv files for each panel of the figure.
DOI: 10.57745/udtorw
title: Replication Data for: Unravelling the Dark Web: explainable inference of the diversity of microbial interactions

description: The functional diversity of microbial communities emerges from a combination of the great number of species and the many interaction types, such as competition, mutualism, predation or parasitism, in microbial ecological networks. Understanding the relationship between microbial networks and the services and functions delivered by the microbial communities is a key challenge for Microbial Ecology, particularly as so many of these interactions are difficult to observe and characterize. We believe that this 'Dark Web' of interactions could be unravelled using an explainable machine learning approach, called Abductive/Inductive Logic Programming (A/ILP) in the R package InfIntE, which uses mechanistic rules (interaction hypotheses) to infer directly the network structure and interaction types. Here we attempt to unravel the dark web of the plant microbiome embodied in metabarcoding data sampled from the grapevine foliar microbiome. Using synthetic, simulated data, we first show that it is possible to satisfactorily reconstruct microbial networks using explainable machine learning. Then we confirm that the dark web of the grapevine microbiome is diverse, being composed of a range of interaction types consistent with the literature. This first attempt to use explainable machine learning to infer microbial interaction networks advances our understanding of the ecological processes that occur in microbial communities and allows us to infer specific types of interaction within the grapevine microbiome that could be validated through experimentation. This work will have potentially valuable applications, such as the discovery of antagonistic interactions that might be used to identify potential biological control agents within the microbiome.
DOI: 10.57745/ufek4l
title: Iber+ executables (V3.2b)

description: This dataset contains the executables (both for Windows and Linux OS) of Iber+ (V3.2b) that were used to model the following four dataset: CEA, Luis, 2023, "Numerical simulation of the rainfall and soil erosion experiments H3 by Tromp-van Meerveld et al. (2008)", https://doi.org/10.57745/2WH9AL, NORD, Guillaume; LEGOUT, Cédric, 2023, "Numerical simulation of rainfall and runoff driven erosion at the hillslope scale: four rainfall events on the Pradel plot", https://doi.org/10.57745/J2A44Q , NORD, Guillaume; LEGOUT, Cédric, 2023, "Spatial variability of rainfall driven erosion at the catchment scale: the June 23rd 2010 rainfall event on the Galabre catchment", https://doi.org/10.57745/NOHRHJ, PITON, Guillaume, 2023, "Massive bed load deposition during a debris-flood event: the Ullion creek event of Oct. 2020", https://doi.org/10.57745/VFBGFR, These executables are based on Iber+ V3.2 with slight adaptations that will be kept for next versions of this software.
DOI: 10.57745/va8hmv
title: FSOV ExIGE - Evaluation multi-environnementale de blé tendre « exotique » - prédictions génomiques GxE et génétique d’association

description: RESUME
DOI: 10.57745/svfql2
title: Implementation of a scoring methodology for environmental assessment of food packaging

description: This file gathers the scientific papers analysed for setting up the GLOPACK packaging score methodology, the anonymized raw results of the interviews (qualitative interviews) and the elements collected in available guidelines.
DOI: 10.57745/ub977k
title: Potential geographical distribution of two genetic lineages of the ambrosia beetle Xylosandrus crassiusculus and the impact of climate change

description: The data provided are associated with a study of the potential geographical distribution of two genetic lineages of the ambrosia beetle Xylosandrus crassiusculus [Urvois et al. 2024, Intraspecific niche models for the invasive ambrosia beetle Xylosandrus crassiusculus suggest contrasted responses to climate change. Oecologia DOI : 10.1007/s00442-024-05528-9]. The files correspond to the projections of a species distribution model according to different climate change scenarios. One model is calibrated for each genetic lineage.
DOI: 10.57745/uzfaen
title: Update of Yarrowia lipolytica E150 genome sequence and annotation

description: The genome of Yarrowia lipolytica strain E150 was sequenced in 2004 by Génolevures (Dujon et al., Nature 2004). However, by comparison to other Y. lipolytica available genomes, it appears that a quite large region was missing at the 3’ extremity of chromosome Yali0D. The Sanger reads produced by the Génoscope in 2004 were manually re-assembled in that part of the genome and an extension of 28,097 bp was added, which contains 12 protein-coding genes. In total, E150 genome contains 6,509 protein-coding genes. This does not include the 30 alternative splicing isoforms nor the 63 transposable elements with a coding sequence.
DOI: 10.57745/v1c8mj
title: Data for the paper "Dell'Acqua et al. Mechanisms of grapevine resilience to a vascular disease: investigating stem radial growth, xylem development, and physiological acclimation"

description: This repository includes datasets exploring the mechanisms of grapevine resilience to a vascular disease: investigating stem radial growth, xylem development, and physiological acclimation. This repository is composed of a README text file and 11 excel files of the data presented in the figures of the paper "Ninon Dell’Acqua, Gregory A Gambetta, Sylvain Delzon, Nathalie Ferrer, Laurent J Lamarque, Nicolas Saurin, Pauline Theodore, Chloé E L Delmas, Mechanisms of grapevine resilience to a vascular disease: investigating stem radial growth, xylem development, and physiological acclimation, Annals of Botany, 2023, mcad188, https://doi.org/10.1093/aob/mcad188"
DOI: 10.57745/v2bpsy
title: Replication data for the article : Enhancing oxime efficacy into brain using ultrasound to counteract nerve agent exposure

description: These tabulated data reproduce the figures presented in the article “Enhancing oxime efficacy into brain using ultrasound to counteract nerve agent exposure”. They correspond to the calculation of enzyme activity in different brain structures of mice following exposure to low and high doses of organophosphorus nerve agent.
DOI: 10.57745/xdveqw
title: Curated sequences of cytochrome P450 from Spodoptera frugiperda rice strain

description: The project contains fasta files of cytochrome P450 genes and proteins corresponding to the sequences curated on the Spodoptera frugiperda whole genome shotgun from the project accession JACWZX, bioproject PRJNA663441, Biosample SAMN16132681; the genomic DNA was obtained from sfR_20170901_p. The sequences are cytochrome P450 manually curated by Frederique Hilliou and officially named by Dr David Nelson
DOI: 10.57745/u6uzjp
title: Hydrological projections (1985-2100) of the Genal DRN (Spain)

description: Hydrological model outputs at daily time step for the projection simulations (1985-2100) in the Genal DRN (Spain). Simulated discharge, baseflow an state of flow (flowing/dry) is spatially distributed at the reach scale. Other hydroclimatic variables (temperature, precipitation, rainfall, snowfall, potential evapotranspiration, actual evapotranspiration, vegetation interception, snow water equivalent, saturation of the soil layer, saturation of the grounwater layer) are spatially aggregated at the catchment scale. Hydrological projections were produced for 3 SSP scenarios and 5 climate models.
DOI: 10.57745/uw7zot
title: Open-source Tension-disk Infiltrometer Meta-Database (OTIM-DB)

description: This database contains data and meta-data of tension-disk infiltrometer measurements on soil from peer-reviewed scientific publications.
DOI: 10.57745/vj145k
title: Data about feed restriction as a tool for further studies describing the mechanisms underlying lipolysis in milk in dairy cows

description: Data concerning the paper "Feed restriction as a tool for further studies describing the mechanisms underlying lipolysis in milk in dairy cows": Supplementary tables Data files (individual results on feeding, milk composition and plasma composition) ATOL and VT ontologies were used to identify the data
DOI: 10.57745/vnyz9a
title: French3lakes - Freshwater zooplankton community composition data from French Peri-Alpine lakes

description: Dataset of zooplankton community composition and abundance, waterbody characteristics, physical, and chemical data from 3 French Peri-Alpine lakes (Geneva, Annecy, Bourget). Samples have been collected monthly and bimonthly in the top 50 m using a 200 µm plankton net and identified to the species level. The dataset is part of a large initiative, the Zooplankton International Geospatial (ZIG) dataset, which includes zooplankton data from 311 inland lakes and reservoirs. ZIG aims to provide a comprehensive data collection to explore the role of zooplankton as indicators of environmental change. Funding: OLA-IS (Alpine Lakes Observatory - https://si-ola.inrae.fr/si_lacs/login.jsf) - AnaEE-France, INRAE Thonon les Bains, CIPEL, SILA, CISALB This work was conducted as a part of the FreshH2O Zoops Working Group. The Working Group was supported by (1) the John Wesley Powell Center for Analysis and Synthesis, funded by the U.S. Geological Survey, (2) the French Foundation for Research on Biodiversity (FRB) through its synthesis center CESAB, and (3) the Environmental Data Science Innovation Inclusion Lab (ESIIL), a NSF funded data synthesis center led by the University of Colorado Boulder in collaboration with NSF’s CyVerse at the University of Arizona and the University of Oslo (NSF Award Number DBI-2153040).
DOI: 10.57745/vpnf3i
title: Couches vectorielles des PAT d'Occitanie

description: Ces couches vectorielles ont été réalisées dans le cadre du projet OutilPAT'Oc, financé par la DRAAF Occitanie, ayant pour objectif d'équiper les Projets Alimentaires Territoriaux (PAT) occitans dans la réalisation de diagnostics de systèmes alimentaires territorialisés. Le produit "PAT Occitans Groupes" contient 5 couches vectorielles représentant l'ensemble des PAT occitans sur 5 échelles territoriales : les départements, les PNR (Parcs Naturels Régionaux), les territoires de projets, les CC (Communautés de Communes) et les CA (Communautés d'Agglomérations). Le produit "PAT Occitans Individuels" contient un document pour chacune des 5 échelles territoriales préalablement listées, contenant une couche vectorielle par PAT. Ces couches vectorielles permettent d’effectuer des croisements avec d’autres sources de données.
DOI: 10.57745/vqtqj4
title: General data of full scale composting experiment

description: This dataset contains general information about the full scale composting experiment: coordinates of the composting site, description of the compostable materials, short literature overview.
DOI: 10.57745/vuetyc
title: Dataset: "Differential warming at crown scale impact walnut primary growth onset and secondary growth rate"

description: Raw data used in the analysis presented in the paper entitled: "Differential warming at crown scale impact walnut primary growth onset and secondary growth rate"
DOI: 10.57745/vxbhdx
title: Using plant identification app to awaken people’s interest for nature

description: Using plant identification app to awaken people’s interest for nature in English and Finnish
DOI: 10.57745/weunps
title: Atmospheric deposition flux of major and biogenic elements over Guadeloupe (2015-2018)

description: Monitoring of atmospheric total deposition in Guadeloupe over a three-year period (2015 to 2018) with measurements of Al, Na, Mg, P, S, K, Ca, Fe, and Zn on a weekly basis. Saharan dust, sea salt, and biogenic emissions explain the origin of the deposited elements.
DOI: 10.57745/uapqqb
title: Pedigree file

description: The pedigree of animals for 6 generations. The format of the file is animal;sire;dam
DOI: 10.57745/uludgi
title: Hed-O-Shift MRI data

description: Anatomic, fMRI and rsMRI data
DOI: 10.57745/v9oopz
title: TEAMTOX KickOff Meeting: minutes

description: Minutes and slides reporting for the kick off meeting of the TEAMTOX project
DOI: 10.57745/w9uwcd
title: Maquettes des interfaces de la Pépinière: outil de planification en maraîchage (Figma)

description: Maquettes (en format Figma) des interfaces utilisateurs de la Pépinière, outil de planification en maraîchage bio (collectif MESCLUN).
DOI: 10.57745/wtuou4
title: Thermophilic enzymatic hydrolysis tests

description: Data collected in the hydrolysis tests performed with crude extract from selected thermophilic fungi Thermoascus aurantiacus, Thermomyces lanuginosus and Mycelyophtora thermophila, as part of Task 3.1. of the AgriLoop project.
DOI: 10.57745/yjbjyh
title: Microtomoscan of Clay-Sulfate Rock before Exposure to H2O in the Desiccator for 62 Days, Part 3

description: microtomoscan
DOI: 10.57745/tv4eb7
title: Periconia digitata protein fasta file

description: The protein fasta file from the gene models prediction was done with the fully automated pipeline EuGene-EP version 1.6.5 (Sallet, Gouzy, & Schiex, 2019).
DOI: 10.57745/u44b7l
title: RPG complété 2020 Région Île-de-France

description: RPG complété 2020. Complète le RPG campagne 2020 pour les départements de la région Île-de-France (77, 78, 91, 93, 94, 95). (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2022.
DOI: 10.57745/upwfe6
title: Dataset of environmental footprint of dehydrated alfalfa production (Medicago sativa L.) in France

description: The production of dehydrated alfalfa for animal feed requires substantial energy-consuming processes, which raises questions about the environmental sustainability of this sector; less energy-intensive processes and a transition to renewable energy are needed. In this study, we quantified the environmental footprint of dehydrated alfalfa production in France and its evolution over time using data collected over two periods (2006 to 2009 and 2016 to 2019). This study was based on twelve production units spread throughout the main alfalfa production areas in France, which represent more than 50% of the national production of dehydrated alfalfa. A life cycle assessment was performed for the three steps of this production: production in the field, transportation from the field to the factory and the dehydration process. This dataset contains the life cycle inventory data of these two periods, for the field and factory parts, as well as the data used for preparing the figures presented in the related article.
DOI: 10.57745/viijfj
title: Supplementary data and script for thesis manuscript "Study of the potential of microbial bioelectrochemical systems for N2 fixation"

description: Scripts used for data presented in thesis manuscipt of Axel Rous about the Study of the potential of microbial bioelectrochemical systems for N2 fixation ("Etude du potentiel des systèmes bioélectrochimiques microbiens pour la fixation de l'azote"). The script folder contains all the scripts used to link the results of the data files and to format the graphs presented. The data folder contains all the data obtained from the measurements made on enrichment of biocathodes for N2 fixation from soil samples, pure strain cultures made to explore hypotheses about enriched bactrial communities and bioanode with Geobacter sulfurreducens under N-deficient conditions. Data for gas, VFA and optical density are in GazDO folder, current measurement in electro folder, community sequencing in seq folder and metabolite measurements in the culture media during the enrichments presented in Gallery and CHNS folders.
DOI: 10.57745/wltdbm
title: Crozets

description: Properties of the crozets used for experiments in rotary kilns and drums
DOI: 10.57745/wqma9j
title: Typologie et cartes de propriétés des sols de la forêt de Chantilly

description: Le maillage est de 70m x 70m, 13000 points de prélèvement pour l'horizon 0-10cm et 1 point sur 4 pour les horizons jusqu'à 60cm de profondeur. Les sols ont été prélevés (printemps-été 2023), puis tamisés à 2 mm, séchés et stockés sur le site de Chantilly ; ils ont été ensuite acheminés à INRAE-BEF pour conditionnement dans des piluliers adaptés et expédiés à Bordeaux pour l’analyse spectrométrique (plateforme PHENOBOIS de l'infrastructure de recherche IN-SYLVA France). INRAE BEF a ensuite analysé les spectres en utilisant des procédures statistiques permettant d’une part d’établir une typologie des sols sur l’ensemble du territoire (maille 70m x 70m, analyses en composantes principales puis classification hiérarchique), et d’autre part de fournir des cartes de propriétés de sol (régressions partielles linéaires en utilisant les données des 60 placettes, puis application sur l’ensemble du massif et kriegage)
DOI: 10.57745/x7r6kb
title: Data Management Plan (DMP)

description: This DMP describes the kind of data the MEAL fish project have generated, and how the data will be managed.
DOI: 10.57745/xxv1xq
title: Data for "Variation in the detectability of predator-prey interactions may lead to misleading conclusions in trophic ecology studies"

description: This repository includes the datasets that were used for the statistical analysis in the article "Variation in the detectability of predator-prey interactions may lead to misleading conclusions in trophic ecology studies". This repository includes: 1) TMD_Data: data obtained from the voracity experiment and the consecutive molecular gut content analysis of the same carabids by Multiplex PCR to draw detectability curves. 2) Size: the size dataset of the tested carabid species, obtained from Carabids.org and personal experiments. 3) CirculantCZ: the carabid community dataset that was already used for the article "Effect of Conservation Agriculture on Aphid Biocontrol by Generalist (Carabid Beetle) and Specialist (Parasitoids Wasp) Natural Enemy Communities in Winter Wheat" (https://doi.org/10.3389/fevo.2022.893787). 4) Script_Digestion_Article_Final: an R Markdown document containing and commenting on the R script of the statistical analysis produced for the article.
DOI: 10.57745/yv4cp8
title: Data and code to model the marine distribution of the European sturgeon by joining global change and recovery scenarios

description: Data and R Code for the manuscript entitled "Travelling away from home? Joining global change and recovery scenarios to anticipate the marine distribution of diadromous fish" published in Ecological Indicators. This deposit contains : 1/ The pdf file (Read_me.pdf) describing in more details Data and R Code as well as the study conducted; 2/ The CSV data file (DATASET_sturio.csv) including the data frame with presences (1990-2022) and pseudo-absences of the European sturgeon, and the five final variables selected in the final ensemble model. Future environmental variables used to make projections are also displayed for three temporal periods: FUTUR1 (2023-2052), FUTUR2 (2047-2076) and FUTUR3 (2070-2099). This file also contains the dispersal variables (i.e. distance to home) used to make projections in twelve river systems (10 currently unoccupied rivers with simulated stocking and 2 rivers with currently sustained population), to simulate recovery scenarios. The grid cell resolution is 10 x 10 km; 3/ The R Code (Script_Calibrate_Project_Ensemble_Models.R) including data input and formatting, the ensemble modelling approach as well as the projections under scenarios of global change and population recovery, using the R package 'biomod2'.
DOI: 10.57745/ur6l1m
title: Ground-coupled radar database on samples of hot-mix asphalt layers

description: This database was collected using several ground-penetrating radar (GPR) systems over hot-mix multi-layer samples, designed under controlled conditions. The experimentation campaign was conducted during the French research project ACIMP (ANR-18-CE22-0020), funded by the French National Research Agency (ANR). One of the project’s objective was the detection of debonded asphalt layers. The database has been extended by hot-mix asphalt samples featuring varying tack coat dosages.
DOI: 10.57745/vcthis
title: Source code and parameters for viscous surges and mixtures with DualSPHysics v5.2

description: This dataset gathers the data and software necessary to perform the simulations shown in Lapillonne et al. (2024) "Towards debris flows simulation using DualSPHysics v5.2 : Internal behaviour of viscous flows and mixtures". The source codes are provided as well as three archives defining the parameters used in the three sets of simulations shown in the paper.
DOI: 10.57745/vjvpyp
title: Eucalyptus (eucalyptus, Eucalyptus)

description: fichier d'impression 3D : bois d'Eucalyptus File for 3D printing: eucalyptus wood
DOI: 10.57745/vqzzm4
title: Vegetables crop calendar under greenhouse

description: This dataset is a compilation of the key (pregermination, sowing, planting, first and last harvest, installation and finish date of solarization) dates in the cropping calendars and provides a description of the land uses of the Agroecological Vegetable Systems Experimental facility (INRAE) plots. It takes into account crops, cover crops and soil solarisation periods ( process of sanitizing the upper soil layers highly increasing the temperature through sun’s and water action) Period: from January 2010 to the end of December 20223. The set will be completed at the beginning of the year.