cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16654993
title: Weddell seal genome annotation file

description: Weddell seal genome annotation: zipped file of annotation + annotation pipeline description.<br>The Weddell seal genome annotation was constructed by the following six steps:RNA-seq assembly: RNA-seq reads for each sample were aligned using Tophat and assembled into transcript files using Cufflinks, with one transcript file per sample.Dog annotation liftover: The Weddell Seal genome and the Ensembl dog genome (CanFam3.1) were aligned using the syntenic aligner Satsuma to transfer the dog annotations to the corresponding regions of the seal genome. This initial liftover was fine-tuned using the local alignment program Rum.Transcript Reconciliation: The four tissue RNA-seq assemblies were reconciled with Cuffmerge, which also integrated the NCBI <i>ab initio</i> annotation as a reference.Abundance estimation: Cuffnorm estimated normalized abundance values for each transcript across all samples.Coding potential: As a proxy for coding potential, transcripts were compared to existing protein databases. A match in either Pfam or RefSeq was taken to indicate coding potential. Categorization:<b> </b>A custom script read the annotation information into a database and categorizes the transcript loci as follows: high confidence protein coding (if RNAseq evidence); low confidence protein coding (if no RNAseq evidence); spliced anti-sense; unspliced anti-sense; lncRNA; other non-coding; and unclassified.
DOI: 10.5519/qd.6z4ufm39
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (35 records)
DOI: 10.6084/m9.figshare.16655062
title: The Antarctic Weddell seal genome reveals evidence of selection on cardiovascular phenotype and lipid handling: Data supporting main figures

description: Supporting data for main figures 1-5
DOI: 10.4121/17302865.v1
title: Data underlying the publication "Detecting Fear of Heights Response to a Virtual Reality Environment Using Functional Near-Infrared Spectroscopy"

description: Functional near-infrared spectroscopy data collected during exposure to virtual reality scenes in head-mounted display in the study of the published article "Detecting Fear of Heights Response to a Virtual Reality Environment Using Functional Near-Infrared Spectroscopy".
DOI: 10.4121/17302865
title: Data underlying the publication "Detecting Fear of Heights Response to a Virtual Reality Environment Using Functional Near-Infrared Spectroscopy"

description: Functional near-infrared spectroscopy data collected during exposure to virtual reality scenes in head-mounted display in the study of the published article "Detecting Fear of Heights Response to a Virtual Reality Environment Using Functional Near-Infrared Spectroscopy".
DOI: 10.4121/16617106.v1
title: Data for 'No significant effects of insecticide use indicators and landscape variables on biocontrol in field margins'

description: This dataset comprises biocontrol data from 38 crop field margins embedded in a gradient of landscapes from crop-dominated to semi-natural habitat-dominated, in the Netherlands in 2017 and 2018. Each field was managed by farmers according to their normal pest management practices. The dataset comprises information on pesticide use in the focal crop fields and 1 km around each focal field, the land use surrounding the focal crop fields, and measurements of biocontrol potential.
DOI: 10.4121/16617106
title: Data for 'No significant effects of insecticide use indicators and landscape variables on biocontrol in field margins'

description: This dataset comprises biocontrol data from 38 crop field margins embedded in a gradient of landscapes from crop-dominated to semi-natural habitat-dominated, in the Netherlands in 2017 and 2018. Each field was managed by farmers according to their normal pest management practices. The dataset comprises information on pesticide use in the focal crop fields and 1 km around each focal field, the land use surrounding the focal crop fields, and measurements of biocontrol potential.
DOI: 10.4121/16617184.v1
title: Data for 'Sweep netting samples, but not sticky trap samples, indicate beneficial arthropod abundance is negatively associated with landscape wide insecticide use'

description: This datasets comprises data from 38 crop field margins embedded in a gradient of landscapes from crop-dominated to semi-natural habitat-dominated, in the Netherlands in 2017 and 2018. Each field was managed by farmers according to their normal pest management practices. The dataset comprises information on pesticide use in the focal crop fields and 1 km around each focal field, the land use surrounding the focal crop fields, arthropod abundances and diversity.
DOI: 10.4121/16617184
title: Data for 'Sweep netting samples, but not sticky trap samples, indicate beneficial arthropod abundance is negatively associated with landscape wide insecticide use'

description: This datasets comprises data from 38 crop field margins embedded in a gradient of landscapes from crop-dominated to semi-natural habitat-dominated, in the Netherlands in 2017 and 2018. Each field was managed by farmers according to their normal pest management practices. The dataset comprises information on pesticide use in the focal crop fields and 1 km around each focal field, the land use surrounding the focal crop fields, arthropod abundances and diversity.
DOI: 10.4121/17294354.v1
title: Data underlying the publication: Dispersive and dissipative coupling of photon Bose-Einstein condensates

description: In this work, we experimentally investigate the synchronization process between two photon Bose-Einstein condensate, which are coupled to one another, either dispersively or dissipatively. We show that both types of coupling are robust to detuning, and establish a phase relation in a similar time scale. We also show that significant difference in condensate population and formation arise under imbalanced optical pumping. The provided dataset contains the experimental data used to generate the figures in C. Toebes, M. Vretenar, J. Klaers, Dispersive and dissipative coupling of photon Bose-Einstein condensates, arXiv:2110.01898 [cond-mat.quant-gas].The data consists of text files, representing measured photon densities, both time-averaged (with a CMOS camera) and time-resolved (with a streak camera). As well as relevant integrated intensities and calculated visibilities derived from this data (as used in the manuscript). A 'README.txt' is provided in the main directory that provides further details.<br>
DOI: 10.4121/17294354
title: Data underlying the publication: Dispersive and dissipative coupling of photon Bose-Einstein condensates

description: In this work, we experimentally investigate the synchronization process between two photon Bose-Einstein condensate, which are coupled to one another, either dispersively or dissipatively. We show that both types of coupling are robust to detuning, and establish a phase relation in a similar time scale. We also show that significant difference in condensate population and formation arise under imbalanced optical pumping. The provided dataset contains the experimental data used to generate the figures in C. Toebes, M. Vretenar, J. Klaers, Dispersive and dissipative coupling of photon Bose-Einstein condensates, arXiv:2110.01898 [cond-mat.quant-gas].The data consists of text files, representing measured photon densities, both time-averaged (with a CMOS camera) and time-resolved (with a streak camera). As well as relevant integrated intensities and calculated visibilities derived from this data (as used in the manuscript). A 'README.txt' is provided in the main directory that provides further details.<br>
DOI: 10.6084/m9.figshare.17352191
title: The complete chloroplast genome of Meconopsis integrifolia collected from the Qinghai-Tibet plateau at an altitude of 4900 meters

description: We reported the complete chloroplast genome sequences of <i>M. integrifolia,</i> which was collected from the Qinghai-Tibet plateau at an altitude of 4900 meters. The cp genome was 152,939 bp in length, containing 88 protein-coding genes, eight rRNAs and 37 tRNAs. It was characterized by a typical quadripartite structure composed of a large single-copy region (83,848 bp) and a small single-copy region (17,861 bp) interspersed by a pair of invert repeat regions of 25,615 bp.
DOI: 10.6084/m9.figshare.17352191.v1
title: The complete chloroplast genome of Meconopsis integrifolia collected from the Qinghai-Tibet plateau at an altitude of 4900 meters

description: We reported the complete chloroplast genome sequences of <i>M. integrifolia,</i> which was collected from the Qinghai-Tibet plateau at an altitude of 4900 meters. The cp genome was 152,939 bp in length, containing 88 protein-coding genes, eight rRNAs and 37 tRNAs. It was characterized by a typical quadripartite structure composed of a large single-copy region (83,848 bp) and a small single-copy region (17,861 bp) interspersed by a pair of invert repeat regions of 25,615 bp.
DOI: 10.5281/zenodo.5797192
title: Dataset for a Function Identification Problem

description: This dataset contains experimental corpus (i.e., executable binaries) for <br> the paper, <em>A Look Back on a Function Identification Problem</em>,<br> which has been presented in the 37th Annual Computer Security Applications Conference (ACSAC '21).
DOI: 10.5281/zenodo.5797191
title: Dataset for a Function Identification Problem

description: This dataset contains experimental corpus (i.e., executable binaries) for <br> the paper, <em>A Look Back on a Function Identification Problem</em>,<br> which has been presented in the 37th Annual Computer Security Applications Conference (ACSAC '21).
DOI: 10.25919/2nf8-4x36
title: Parkes observations for project P1131 semester 2021OCTS_07

description: Fast Radio Bursts (FRBs) are extragalactic radio transients with the duration time in the range of several microseconds to tens of milliseconds. The origin of them is still unclear. Ultraluminous X-ray Sources (ULXs) are objects that mostly discovered in external galaxies which host black holes or neutron stars, with isotropic luminosities exceeding the usual Eddington value for stellar-mass black holes. The host galaxies of ULXs, and their spatial offsets within their hosts, show broad similarities to those of FRB. Periodicity of days to years of some repeated FRBs could be attributed to the companion effect of ULXs. Moreover, pulsing ULXs (PULXs) which hots neutron stars may be the manifestation of accreting magnetars. Therefore, we propose targeted FRB searches of known PULXs, which have not yet been carried out by other telescopes according to published literature to date. Our observations will play an important role in investigating the FRB progenitors. If FRBs were detected in our selected ULXs, then puzzle of FRBs' origin would be directly resolved. If no FRB is detected, we can still constrain some ULX-related models statistically, e.g. the upper limit of the burst rate, the period of duty cycle, etc. Our observations can also be used to hunt for radio pulsars in PULXs.
DOI: 10.5281/zenodo.5701607
title: Code and data for 'Bacillus subtilis histidine kinase KinC activates biofilm formation by controlling heterogeneity of single-cell responses'

description: Code and data used in the paper 'Bacillus subtilis histidine kinase KinC activates biofilm formation by controlling heterogeneity of single-cell responses' https://doi.org/10.1128/mBio.01694-21
DOI: 10.5281/zenodo.5701606
title: Code and data for 'Bacillus subtilis histidine kinase KinC activates biofilm formation by controlling heterogeneity of single-cell responses'

description: Code and data used in the paper 'Bacillus subtilis histidine kinase KinC activates biofilm formation by controlling heterogeneity of single-cell responses' https://doi.org/10.1128/mBio.01694-21
DOI: 10.6084/m9.figshare.17096975.v1
title: Tree-ring carbon-14 data for 1250-1295 CE

description: Carbon-14 concentrations in the tree rings of asunaro (Thujopsis dolabrata) excavated from the Shimokita Peninsula, Aomori Prefecture. Carbon-14 concentrations were measured at Yamagata University (YU-AMS).
DOI: 10.6084/m9.figshare.17343248.v1
title: Effect of non-steroidal anti-inflammatory drugs on the inflammatory responses of bovine endometrial epithelial cells in vitro - Supplementary Tables

description: Supplementary Tables for publication entitled Effect of non-steroidal anti-inflammatory drugs on the inflammatory responses of bovine endometrial epithelial cells in vitro. <br><br>Supplementary Table 1 - List of genes analyzed by Nanostring (Nanostring technologies Inc) in the cell culture model. <br>Supplementary Table 2 - Normalized counts of genes expressed by bovine endometrial epithelial (bEEL) cells that meet the expression threshold for inclusion in statistical analysis (greater than background gene expression). Untreated bEEL cells (RPMI media + 0.1% DMSO) were used as a control (Control) and treatments included NSAID; flunixin meglumine (Flunixin; 50 μM), meloxicam (5 μM), tolfenamic acid (50 μM), either alone or in combination with an inflammation cocktail (Inflamed; (lipopolysaccharide, 1 μg/mL, bovine interleukin-1β, 10 ng/mL, and bovine tumour necrosis factor α, 50 ng/mL). Expression data was normalized using nSovlver software version 4.0 using the geometric mean of counts for the reference genes <i>ACTB</i>, <i>B2M</i>, <i>GAPDH</i>, <i>RLRP10</i>, <i>RPL13A</i>, <i>RPL15</i>, <i>RPL19</i>, <i>UXT</i>, and <i>YWHAZ</i>. Means are presented with standard error of the means (SEM), significance was determined as P &lt; 0.05, permutation ANOVA with post-hoc Benjamini-Hochberg testing (significance groupings, whereby like letters are not signficant P &gt; 0.05), R version 4.0.2.
DOI: 10.6084/m9.figshare.17359000.v1
title: Additional file 1 of Melatonin-primed ADMSCs elicit an efficacious therapeutic response in improving high-fat diet induced non-alcoholic fatty liver disease in C57BL/6J mice

description: Additional file 1: Figure S1 Flow cytometry analysis of AD-MSCs for MSC markers CD44 and CD105 and hematopoietic stem cell marker CD34 and CD45. Figure S2 (a) Food intake and water intake (b) Body weight gain, liver weight and liver: body weight ratio of Control, HFFD, HFFD+MSC and HFFD+Mel.MSC.
DOI: 10.6084/m9.figshare.17359000
title: Additional file 1 of Melatonin-primed ADMSCs elicit an efficacious therapeutic response in improving high-fat diet induced non-alcoholic fatty liver disease in C57BL/6J mice

description: Additional file 1: Figure S1 Flow cytometry analysis of AD-MSCs for MSC markers CD44 and CD105 and hematopoietic stem cell marker CD34 and CD45. Figure S2 (a) Food intake and water intake (b) Body weight gain, liver weight and liver: body weight ratio of Control, HFFD, HFFD+MSC and HFFD+Mel.MSC.
DOI: 10.6084/m9.figshare.17359093
title: Additional file 1 of Fibroblast growth factor (FGF), FGF receptor (FGFR), and cyclin D1 (CCND1) DNA methylation in head and neck squamous cell carcinomas is associated with transcriptional activity, gene amplification, human papillomavirus (HPV) status, and sensitivity to tyrosine kinase inhibitors

description: Additional file 1: Table S1. DNA methylation analysis of the encoding genes CCND1, FGFR1-4, FGF1-14, and FGF16-23 at single CpG site resolution (840 CpG sites), employing The Cancer Genome Research Atlas (TCGA) HNSCC cohort (N = 530 tumor and N = 50 normal adjacent tissue samples) and HNSCC cell lines (N=40). Single CpG DNA methylation level, spearman’s rank correlation to mRNA expression with regard to human papilloma (HPV) and gene amplification status, and correlation of methylation with sensitivity to the selective FGFR inhibitors PD 173074 and AZD4547 in HNSCC cell lines were included.
DOI: 10.6084/m9.figshare.17359093.v1
title: Additional file 1 of Fibroblast growth factor (FGF), FGF receptor (FGFR), and cyclin D1 (CCND1) DNA methylation in head and neck squamous cell carcinomas is associated with transcriptional activity, gene amplification, human papillomavirus (HPV) status, and sensitivity to tyrosine kinase inhibitors

description: Additional file 1: Table S1. DNA methylation analysis of the encoding genes CCND1, FGFR1-4, FGF1-14, and FGF16-23 at single CpG site resolution (840 CpG sites), employing The Cancer Genome Research Atlas (TCGA) HNSCC cohort (N = 530 tumor and N = 50 normal adjacent tissue samples) and HNSCC cell lines (N=40). Single CpG DNA methylation level, spearman’s rank correlation to mRNA expression with regard to human papilloma (HPV) and gene amplification status, and correlation of methylation with sensitivity to the selective FGFR inhibitors PD 173074 and AZD4547 in HNSCC cell lines were included.
DOI: 10.6084/m9.figshare.17359102.v1
title: Additional file 2 of Fibroblast growth factor (FGF), FGF receptor (FGFR), and cyclin D1 (CCND1) DNA methylation in head and neck squamous cell carcinomas is associated with transcriptional activity, gene amplification, human papillomavirus (HPV) status, and sensitivity to tyrosine kinase inhibitors

description: Additional file 2: Table S2. DNA methylation, copy number variation, drug sensitivity, TP53 mutation status, and HPV-status of analyzed HNSCC cell lines.
DOI: 10.6084/m9.figshare.17359102
title: Additional file 2 of Fibroblast growth factor (FGF), FGF receptor (FGFR), and cyclin D1 (CCND1) DNA methylation in head and neck squamous cell carcinomas is associated with transcriptional activity, gene amplification, human papillomavirus (HPV) status, and sensitivity to tyrosine kinase inhibitors

description: Additional file 2: Table S2. DNA methylation, copy number variation, drug sensitivity, TP53 mutation status, and HPV-status of analyzed HNSCC cell lines.
DOI: 10.25910/hk13-pa97
title: Dataset for "The Physiotherapy Evidence Database (PEDro) has better free full-text access than PubMed: an observational study"

description: This is the dataset for the article: Moseley AM, Fernández Hernando D, Saragiotto BT, Sharma S, Maharjan E, Elkins MR The Physiotherapy Evidence Database (PEDro) has better free full-text access than PubMed: an observational study Brazilian Journal of Physical Therapy; accepted for publication on 27 December 2021
DOI: 10.5517/ccdc.csd.cc2c1g52
title: CCDC 2176143: Experimental Crystal Structure Determination

description: Related Article: Dominik Vogt, Roland Fröhlich, Rudolf Aumann, Constantin G. Daniliuc |2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/4033863
title: Elon Musk Tweets
DOI: 10.5517/ccdc.csd.cc26vq0t
title: CCDC 2051456: Experimental Crystal Structure Determination

description: Related Article: Satoshi Takebayashi, Mark A. Iron, Moran Feller, Orestes Rivada-Wheelaghan, Gregory Leitus, Yael Diskin-Posner, Linda J. W. Shimon, Liat Avram, Raanan Carmieli, Sharon G. Wolf, Ilit Cohen-Ofri, Rajashekharayya A. Sanguramath, Roy Shenhar, Moris Eisen, David Milstein|2022|Nat. Catal.|5|494|doi:10.1038/s41929-022-00793-4
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26vq1v
title: CCDC 2051457: Experimental Crystal Structure Determination

description: Related Article: Satoshi Takebayashi, Mark A. Iron, Moran Feller, Orestes Rivada-Wheelaghan, Gregory Leitus, Yael Diskin-Posner, Linda J. W. Shimon, Liat Avram, Raanan Carmieli, Sharon G. Wolf, Ilit Cohen-Ofri, Rajashekharayya A. Sanguramath, Roy Shenhar, Moris Eisen, David Milstein|2022|Nat. Catal.|5|494|doi:10.1038/s41929-022-00793-4
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26vq2w
title: CCDC 2051458: Experimental Crystal Structure Determination

description: Related Article: Satoshi Takebayashi, Mark A. Iron, Moran Feller, Orestes Rivada-Wheelaghan, Gregory Leitus, Yael Diskin-Posner, Linda J. W. Shimon, Liat Avram, Raanan Carmieli, Sharon G. Wolf, Ilit Cohen-Ofri, Rajashekharayya A. Sanguramath, Roy Shenhar, Moris Eisen, David Milstein|2022|Nat. Catal.|5|494|doi:10.1038/s41929-022-00793-4
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26vq3x
title: CCDC 2051459: Experimental Crystal Structure Determination

description: Related Article: Satoshi Takebayashi, Mark A. Iron, Moran Feller, Orestes Rivada-Wheelaghan, Gregory Leitus, Yael Diskin-Posner, Linda J. W. Shimon, Liat Avram, Raanan Carmieli, Sharon G. Wolf, Ilit Cohen-Ofri, Rajashekharayya A. Sanguramath, Roy Shenhar, Moris Eisen, David Milstein|2022|Nat. Catal.|5|494|doi:10.1038/s41929-022-00793-4
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26vq4y
title: CCDC 2051460: Experimental Crystal Structure Determination

description: Related Article: Satoshi Takebayashi, Mark A. Iron, Moran Feller, Orestes Rivada-Wheelaghan, Gregory Leitus, Yael Diskin-Posner, Linda J. W. Shimon, Liat Avram, Raanan Carmieli, Sharon G. Wolf, Ilit Cohen-Ofri, Rajashekharayya A. Sanguramath, Roy Shenhar, Moris Eisen, David Milstein|2022|Nat. Catal.|5|494|doi:10.1038/s41929-022-00793-4
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26vq5z
title: CCDC 2051461: Experimental Crystal Structure Determination

description: Related Article: Satoshi Takebayashi, Mark A. Iron, Moran Feller, Orestes Rivada-Wheelaghan, Gregory Leitus, Yael Diskin-Posner, Linda J. W. Shimon, Liat Avram, Raanan Carmieli, Sharon G. Wolf, Ilit Cohen-Ofri, Rajashekharayya A. Sanguramath, Roy Shenhar, Moris Eisen, David Milstein|2022|Nat. Catal.|5|494|doi:10.1038/s41929-022-00793-4
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.