cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pjynyb
title: Occurrence Download

description: A dataset containing 7680586 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Erzaleus metrius (Flor, 1861), Hydrellia mutata (Zetterstedt, 1846), Massariosphaeria fridae Spooren, Isognathus allamandae Clark, 1920, Pseudaulacaspis pentagona (Targioni Tozzetti, 1886), Euploea euphon (Fabricius, 1798), Leptosphaeria maculans Ces. & De Not., Phomopsis cruciferae Grove, Ophiomyia alliariae Hering, 1957, Athalia ancilla Serville, 1823, Ceutorhynchus alliariae Brisout de Barneville, 1860, Ceutorhynchus constrictus Schoenherr, 1845, Athalia liberta (Klug, 1815), Phyllotreta ochripes (Curtis, 1837), Eurydema oleracea (Linnaeus, 1758), Phaedon cochleariae (Fabricius, 1792), Ceutorhynchus thomsoni Kolbe, 1900, Erysiphe cruciferarum Opiz ex L.Junell, Anthocharis cardamines (Linnaeus, 1758), Pieris napi (Linnaeus, 1758), Hyaloperonospora niessliana (Berl.) Constant., Rhigognostis incarnatella (Steudel, 1873), Evergestis limbata Linnaeus, Amara ovata (Fabricius, 1792), Lipaphis pseudobrassicae (Davis, 1914), Cauchas rufimitrella (Scopoli, 1763), Pieris mannii (Mayer, 1851), Graphocephala versuta (Say, 1830), Bombylius major Linnaeus, 1758, Protographium marcellus (Cramer, 1777), Linaria cannabina (Linnaeus, 1758), Andrena milwaukeensis Graenicher, 1903, Andrena vicina Smith, 1853, Nomada luteoloides Robertson, 1895, Andrena nuda Robertson, 1891, Alliaria petiolata (M.Bieb.) Cavara & Grande, Chlorocytus polichna (Walker, 1848), Stenomalina gracilis (Walker, 1834), Trichomalus perfectus (Walker, 1835), Pnigalio soemius (Walker, 1839), Trichomalus nanus (Walker, 1836), Necremnus tidius (Walker, 1839), Chrysocharis pentheus (Walker, 1839), Chrysocharis nephereus (Walker, 1839), Liriomyza brassicae (Riley, 1885), Cirrospilus vittatus Walker, 1838, Acrolepia betulella Curtis, 1838, Acrolepia assectella (Zeller, 1839), Cacoecimorpha pronubana (Hübner, 1796-1799), Mitoura gryneus (Hübner, 1816))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7680586 records from 9015 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012716-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/qne-lp1-6k2
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zds-tha-ec6
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4ll-j8q-yjz
title: Balclutha Kirkaldy, 1900

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fvc-r6l-ha6
title: Phacops

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nv0-jzs-k5h
title: Trachurus trachurus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ks3-vvm-jct
title: †Chaetetes Fischer, 1830

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zpf-qvq-abc
title: Balclutha Kirkaldy, 1900

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d4d-v3r-py6
title: Bison C. H. Smith, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v5s-sa4-pp9
title: Bison C. H. Smith, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3c6-b2t-sg8
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l58-s83-zm7
title: Equus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2kb-1jn-78x
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hbb-58e-9n4
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3b2-c0k-jnz
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wgx-8qb-b0l
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dd.pdb59g
title: Dataset generated from Esri tool

description: Derived dataset generated by Esri geoprocessing tool using GBIF API
DOI: 10.3535/0v9-wrh-4fd
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sq4-a9l-ptr
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mzs-3rb-9ba
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sqw-f19-fyn
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ty4-bal-t02
title: Atlantoxerus Forsyth Major, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fnk-7a9-6yj
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3kg-dhr-e0q
title: Phacops

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/eyk-kqh-m9p
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/adw-bz6-w9c
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zrn-fva-evk
title: Phacops

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q5y-q1n-t2g
title: Balclutha Kirkaldy, 1900

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wh4-6sp-ccd
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0yf-wvb-6tc
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/shz-zpj-9yl
title: Balclutha Kirkaldy, 1900

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yqf-s1r-jwt
title: Amphibia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l7l-f07-nlx
title: Cervus elaphus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mm1-vds-wgn
title: Sus scrofa Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dmr-1w7-0qa
title: Pseudopus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ws7-pg7-fv5
title: †Hemiaster Desor in Agassiz & Desor, 1847

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3h8-m44-ylv
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lba-1ce-nbh
title: Chordata

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8ee-7tn-aqc
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kta-vtl-mpy
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nt4-l5x-nge
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xj4-9a5-css
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.7r2vhh
title: Occurrence Download

description: A dataset containing 3049 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mammut americanum"
 ]
}

 The dataset includes 3049 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007483-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.87zmg7
title: Occurrence Download

description: A dataset containing 1638 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nidularium innocentii Lem."
 ]
}

 The dataset includes 1638 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027099-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hgcz89
title: Occurrence Download

description: A dataset containing 697 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cantua buxifolia Juss. ex Lam."
 ]
}

 The dataset includes 697 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027100-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48511/8h1v61kz
title: McDonald Creek (NEMCD01)

description: Water quality monitoring for McDonald Creek. From 2015 to 2017 data in this dataset was collected as part of the Columbia Basin Water Quality Monitoring Project which was coordinated and administered by Mainstreams Environmental Society.
DOI: 10.15468/dl.pdt942
title: Occurrence Download

description: A dataset containing 479 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hydrochaeris hydrochaeris (Linnaeus, 1766)"
 ]
}

 The dataset includes 479 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027101-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7bjdmd
title: Occurrence Download

description: A dataset containing 21981 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Hydrochoerus hydrochaeris (Linnaeus, 1766)"
 ]
}

 The dataset includes 21981 records from 254 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027102-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28898911.v1
title: Spatio-temporal distribution of dengue cases and vectors along with the interrelationship of environmental and climatic factors in the metropolitan city, Kolkata, India, for 2017–2022: calling implications for vector control

description: We studied the spatio-temporal distribution of dengue at the micro-scale, along with other important factors for disease transmission, like vector prevalence, seasonality, breeding behaviour, entomological indices, and its relation with environmental and climatic factors in Kolkata, one of the most populous metropolitan cities in India, facing dengue upsurge in recent years. We analysed dengue data from 144 wards, city-level meteorological data for 6 years (2017–2022), Land Use Land Cover (LULC) data for 2022, and entomological surveillance data from 7 wards in 2022. Dengue showed high spatial heterogeneity and clustering at the micro-level, with a yearly post-monsoon peak (August-November) accounting for ∼90% of cases and representing a 2–3 month lag between high rainfall, temperature, and relative humidity (RH). Both <i>Ae. aegypti</i> and <i>Ae. albopictus</i> were prevalent, with distinct spatio-temporal distributions and instances of mixed breeding. <i>Ae. aegypti</i> primarily breeds indoors and peri-domestically, showing a strong correlation with rainfall (R² = 0.78, p-value = 0.0003) in indoor habitats and had a perennial presence. In contrast, <i>Ae. albopictus</i> was the more common outdoor breeder, strongly correlating with rainfall (R² = 0.75, p-value = 0.0003) in outdoor habitats. This is the first study from Kolkata, India, highlighting the spatio-temporal distribution of dengue and its links to vector behaviour, climate, and environmental factors. The findings will help identify recent dengue hotspots in Kolkata, which will help in developing targeted vector control strategies.
DOI: 10.6084/m9.figshare.28898911
title: Spatio-temporal distribution of dengue cases and vectors along with the interrelationship of environmental and climatic factors in the metropolitan city, Kolkata, India, for 2017–2022: calling implications for vector control

description: We studied the spatio-temporal distribution of dengue at the micro-scale, along with other important factors for disease transmission, like vector prevalence, seasonality, breeding behaviour, entomological indices, and its relation with environmental and climatic factors in Kolkata, one of the most populous metropolitan cities in India, facing dengue upsurge in recent years. We analysed dengue data from 144 wards, city-level meteorological data for 6 years (2017–2022), Land Use Land Cover (LULC) data for 2022, and entomological surveillance data from 7 wards in 2022. Dengue showed high spatial heterogeneity and clustering at the micro-level, with a yearly post-monsoon peak (August-November) accounting for ∼90% of cases and representing a 2–3 month lag between high rainfall, temperature, and relative humidity (RH). Both <i>Ae. aegypti</i> and <i>Ae. albopictus</i> were prevalent, with distinct spatio-temporal distributions and instances of mixed breeding. <i>Ae. aegypti</i> primarily breeds indoors and peri-domestically, showing a strong correlation with rainfall (R² = 0.78, p-value = 0.0003) in indoor habitats and had a perennial presence. In contrast, <i>Ae. albopictus</i> was the more common outdoor breeder, strongly correlating with rainfall (R² = 0.75, p-value = 0.0003) in outdoor habitats. This is the first study from Kolkata, India, highlighting the spatio-temporal distribution of dengue and its links to vector behaviour, climate, and environmental factors. The findings will help identify recent dengue hotspots in Kolkata, which will help in developing targeted vector control strategies.
DOI: 10.6084/m9.figshare.28919320.v1
title: <i>Triatoma rubrofasciata</i> as a potential vector for bartonellosis

description: <i>Bartonella</i> spp. are most often transmitted by arthropod vectors or animal bites and scratches. However, the vector species involved in the transmission of human bartonellosis remain poorly understood. This study investigated the presence of <i>Bartonella</i> in <i>Triatoma rubrofasciata</i> from Guangxi and Hainan provinces in China, evaluating its potential as a vector. <i>Bartonella</i> was identified in <i>T. rubrofasciata</i> samples through PCR amplification and sequencing of the <i>ITS</i>, <i>gltA</i>, and <i>rpoB</i> genes. The survival duration of <i>Bartonella</i> in triatomines, along with the potential for transovarial transmission was examined. Transmission experiments were conducted to determine whether <i>T. rubrofasciata</i> could transmit <i>Bartonella</i> to mice. Additionally, <i>Bartonella spp.</i> were also compared across rats, ticks, and cat fleas collected from the same regions. Results: Six <i>Bartonella</i> species were identified in <i>T. rubrofasciata</i>, including <i>B. rochalimae</i>, <i>B. elizabethae</i>, <i>B. tribocorum</i>, <i>B. queenslandensis</i>, <i>B. silvatica</i>, and <i>B. coopersplainsensis</i>. And the first three species are zoonotic. <i>B. rochalimae</i> and <i>B. elizabethae</i> were able to persist in <i>T. rubrofasciata</i> for at least eight weeks, although transovarial transmission of them was not observed. In comparison to rats, ticks, and cat fleas, <i>T. rubrofasciata</i> exhibited a higher diversity of <i>Bartonella</i> species. Laboratory experiments confirmed that <i>B. elizabethae</i> can infect mice through <i>T. rubrofasciata</i> bites or intraperitoneal injection of <i>T. rubrofasciata</i> feces. This study supports the hypothesis that <i>T. rubrofasciata</i> may serve as a vector for bartonellosis. These results broaden the current understanding of <i>Bartonella</i> transmission dynamics and highlight the potential role of triatomines in the spread of this disease.
DOI: 10.6084/m9.figshare.28955129
title: Prevalence and treatment outcomes of latent tuberculosis infection among older patients with chronic obstructive pulmonary disease in an area with intermediate tuberculosis burden

description: Chronic obstructive pulmonary disease (COPD) and aging both increase the risk of tuberculosis (TB), an important infectious disease in human. Exploring the burden and predictors of latent tuberculosis infection (LTBI) and treatment outcomes for older individuals with COPD is essential to guide LTBI intervention policy. We enrolled patients aged over 60 years with COPD between January 2021 and June 2023 for LTBI screening using interferon-gamma release assay (IGRA). LTBI treatment options included all World Health Organization (WHO)-recommended regimens. The final regimen was selected through shared decision-making between patients and their COPD physicians, leveraging the long-standing rapport being established. We investigated the prevalence of LTBI in this population, identified risk factors using logistic regression analysis, and evaluated treatment outcomes. A total of 810 COPD patients (mean: 72.8-years) underwent LTBI screening, with an IGRA-positive rate of 23.8%. IGRA positivity was correlated with smoking pack-years (adjusted odds ratio [aOR]: 1.02, <i>p</i> &lt; 0.001), current smoking status (aOR 1.40, <i>p</i> = 0.030), COPD duration (aOR 1.10, <i>p</i> = 0.03), inhaled corticosteroid use (aOR 3.06, <i>p</i> &lt; 0.001), and a cumulative equivalent dose of prednisolone exceeding 210 mg over 2 years (aOR 3.13, <i>p</i> &lt; 0.001). Treatment was initiated in 150 patients (77.7%), predominantly with weekly rifapentine plus isoniazid (3HP) (60.7%). The overall completion rate was 82.0%, with adverse reactions being the primary reason for discontinuation. Our findings support that the LTBI intervention is recommended for older patients with COPD, especially those at higher risk, as nearly 25% of them have tuberculosis infection. The high treatment completion rate highlights the safety and feasibility of the WHO-recommended regimens.
DOI: 10.6084/m9.figshare.28955129.v1
title: Prevalence and treatment outcomes of latent tuberculosis infection among older patients with chronic obstructive pulmonary disease in an area with intermediate tuberculosis burden

description: Chronic obstructive pulmonary disease (COPD) and aging both increase the risk of tuberculosis (TB), an important infectious disease in human. Exploring the burden and predictors of latent tuberculosis infection (LTBI) and treatment outcomes for older individuals with COPD is essential to guide LTBI intervention policy. We enrolled patients aged over 60 years with COPD between January 2021 and June 2023 for LTBI screening using interferon-gamma release assay (IGRA). LTBI treatment options included all World Health Organization (WHO)-recommended regimens. The final regimen was selected through shared decision-making between patients and their COPD physicians, leveraging the long-standing rapport being established. We investigated the prevalence of LTBI in this population, identified risk factors using logistic regression analysis, and evaluated treatment outcomes. A total of 810 COPD patients (mean: 72.8-years) underwent LTBI screening, with an IGRA-positive rate of 23.8%. IGRA positivity was correlated with smoking pack-years (adjusted odds ratio [aOR]: 1.02, <i>p</i> &lt; 0.001), current smoking status (aOR 1.40, <i>p</i> = 0.030), COPD duration (aOR 1.10, <i>p</i> = 0.03), inhaled corticosteroid use (aOR 3.06, <i>p</i> &lt; 0.001), and a cumulative equivalent dose of prednisolone exceeding 210 mg over 2 years (aOR 3.13, <i>p</i> &lt; 0.001). Treatment was initiated in 150 patients (77.7%), predominantly with weekly rifapentine plus isoniazid (3HP) (60.7%). The overall completion rate was 82.0%, with adverse reactions being the primary reason for discontinuation. Our findings support that the LTBI intervention is recommended for older patients with COPD, especially those at higher risk, as nearly 25% of them have tuberculosis infection. The high treatment completion rate highlights the safety and feasibility of the WHO-recommended regimens.
DOI: 10.6084/m9.figshare.28919320
title: <i>Triatoma rubrofasciata</i> as a potential vector for bartonellosis

description: <i>Bartonella</i> spp. are most often transmitted by arthropod vectors or animal bites and scratches. However, the vector species involved in the transmission of human bartonellosis remain poorly understood. This study investigated the presence of <i>Bartonella</i> in <i>Triatoma rubrofasciata</i> from Guangxi and Hainan provinces in China, evaluating its potential as a vector. <i>Bartonella</i> was identified in <i>T. rubrofasciata</i> samples through PCR amplification and sequencing of the <i>ITS</i>, <i>gltA</i>, and <i>rpoB</i> genes. The survival duration of <i>Bartonella</i> in triatomines, along with the potential for transovarial transmission was examined. Transmission experiments were conducted to determine whether <i>T. rubrofasciata</i> could transmit <i>Bartonella</i> to mice. Additionally, <i>Bartonella spp.</i> were also compared across rats, ticks, and cat fleas collected from the same regions. Results: Six <i>Bartonella</i> species were identified in <i>T. rubrofasciata</i>, including <i>B. rochalimae</i>, <i>B. elizabethae</i>, <i>B. tribocorum</i>, <i>B. queenslandensis</i>, <i>B. silvatica</i>, and <i>B. coopersplainsensis</i>. And the first three species are zoonotic. <i>B. rochalimae</i> and <i>B. elizabethae</i> were able to persist in <i>T. rubrofasciata</i> for at least eight weeks, although transovarial transmission of them was not observed. In comparison to rats, ticks, and cat fleas, <i>T. rubrofasciata</i> exhibited a higher diversity of <i>Bartonella</i> species. Laboratory experiments confirmed that <i>B. elizabethae</i> can infect mice through <i>T. rubrofasciata</i> bites or intraperitoneal injection of <i>T. rubrofasciata</i> feces. This study supports the hypothesis that <i>T. rubrofasciata</i> may serve as a vector for bartonellosis. These results broaden the current understanding of <i>Bartonella</i> transmission dynamics and highlight the potential role of triatomines in the spread of this disease.