cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5493840
title: Biomarker Signatures of Quality for Engineering Nasal Chondrocyte-Derived Cartilage

description: Data underlying the figures in the publication “Biomarker Signatures of Quality for Engineering Nasal Chondrocyte-Derived Cartilage”, published in <em>Front Bioeng Biotechnol., </em><strong>2020</strong>, 8: 283. (DOI: 10.3389/fbioe.2020.00283). Table of contents: <strong>1. biochem_summary</strong>; Biochemistry data and MBS of pellets made from NC and PC mixtures in the titration experiment. <strong>2. dirty-clean-biochem</strong>; Biochemistry data and MBS of pellets made from passage 2 cells from dirty/clean biopsies. <strong>3. identity_all</strong>; All passage 1 and passage 2 cells of type pure NC and pure PC from the titration and dirty/clean datasets. All PCR data included. <strong>4. identity_titration</strong>; Passage 1 and 2 and pellets made from pure NC and PC populations in the titration experiment. All PCR data included. Average (avg) refers to the average of the biologicsl replicates (which are already the average of the experimental replicates of Data 5). <strong>5. identity_titration_avg</strong>; Passage 1 and 2 and pellets made from pure NC and PC populations in the titration experiment. All PCR data included. All experimental replicate information is included (which are the average of the technical replicates). <strong>6. PCR_cells_summary</strong>; For the purity and potency assays, mixtures of increasing NC to PC cell ratios were created. The PCR data from those mixtures are here for passage 2 and for the pure populations as passage 1. <strong>7. PCR_pellet_summary</strong>; For the purity and potency assays, mixtures of increasing NC to PC cell ratios were created. PCR data from engineered pellets are here included. <strong>8. PCRdirty-clean</strong>; PCR data of cells obtained from dirty/clean biopsies at passage 0,1, and 2. <strong>9. PCRsummary_all</strong>; Combined Data 5, 7, and 8. <strong>10. Proliferation_TOT</strong>; Proliferation rates of cells from clean and dirty biopsies.
DOI: 10.5281/zenodo.5469383
title: dataset related to article: "Severe epilepsy in CNTNAP2 related Pitt Hopkins like syndrome successfully treated with stiripentol"

description: Dataset contains Sanger Sequencing Analysis: <strong>.ab1</strong> (H1235 CNTNAP2 ex22F.ab1, H1235 CNTNAP2 ex22R.ab1) NGS analysis: <strong>.vcf</strong> (H1235)
description: Study suported by Italian Ministry of Healt. Programma Ricerca Corrente LR2: Basi molecolari delle epilessie su base genetica: sviluppo di una piattaforma analitica genetica di nuova generazione per l'ottimizzazione dei processi di diagnosi e per l'identificazione di nuovi geni malattia e di terapie personalizzate
DOI: 10.5281/zenodo.5469382
title: dataset related to article: "Severe epilepsy in CNTNAP2 related Pitt Hopkins like syndrome successfully treated with stiripentol"

description: Dataset contains Sanger Sequencing Analysis: <strong>.ab1</strong> (H1235 CNTNAP2 ex22F.ab1, H1235 CNTNAP2 ex22R.ab1) NGS analysis: <strong>.vcf</strong> (H1235)
description: Study suported by Italian Ministry of Healt. Programma Ricerca Corrente LR2: Basi molecolari delle epilessie su base genetica: sviluppo di una piattaforma analitica genetica di nuova generazione per l'ottimizzazione dei processi di diagnosi e per l'identificazione di nuovi geni malattia e di terapie personalizzate
DOI: 10.5281/zenodo.5469043
title: dataset related to article: "Paroxysmal tonic upgaze in a child with SCN8A-related encephalopathy"

description: dataset contains Sanger Sequencing Analysis: .ab1 (S2939-SCN8A-10F.ab1, S2939-SCN8A-10R.ab1)<br> NGS analysis: .vcf (S2939)
description: Study supported by italian ministry of healt: Ricerca Corrente - LR2: Basi molecolari delle epilessie su base genetica: sviluppo di una piattaforma analitica genetica di nuova generazione per l'ottimizzazione dei processi di diagnosi e per l'identificazione di nuovi geni malattia e di terapie personalizzate
DOI: 10.5281/zenodo.5493851
title: Protologger data

description: This is the base bin folder for Protologger
DOI: 10.5281/zenodo.5469042
title: dataset related to article: "Paroxysmal tonic upgaze in a child with SCN8A-related encephalopathy"

description: dataset contains Sanger Sequencing Analysis: .ab1 (S2939-SCN8A-10F.ab1, S2939-SCN8A-10R.ab1)<br> NGS analysis: .vcf (S2939)
description: Study supported by italian ministry of healt: Ricerca Corrente - LR2: Basi molecolari delle epilessie su base genetica: sviluppo di una piattaforma analitica genetica di nuova generazione per l'ottimizzazione dei processi di diagnosi e per l'identificazione di nuovi geni malattia e di terapie personalizzate
DOI: 10.5281/zenodo.4561556
title: Protologger data

description: This is the base bin folder for Protologger
DOI: 10.5281/zenodo.5465785
title: dataset related to article: "Characteristics of Patients Returning to Work After Brain Tumor Surgery"

description: Dataset related to the analysis of the differences between patients returning to work and those who did not after brain tumor surgery.
DOI: 10.5281/zenodo.5465784
title: dataset related to article: "Characteristics of Patients Returning to Work After Brain Tumor Surgery"

description: Dataset related to the analysis of the differences between patients returning to work and those who did not after brain tumor surgery.
DOI: 10.6084/m9.figshare.11363678.v1
title: Degenerate sweeping process with a Lipschitz perturbation

description: In this paper, we prove a theorem concerning the existence and uniqueness of a solution for a degenerate sweeping process with a Lipschitz single valued perturbation in Hilbert space. An application to differential complementarity problems is given.
DOI: 10.6084/m9.figshare.11363678
title: Degenerate sweeping process with a Lipschitz perturbation

description: In this paper, we prove a theorem concerning the existence and uniqueness of a solution for a degenerate sweeping process with a Lipschitz single valued perturbation in Hilbert space. An application to differential complementarity problems is given.
DOI: 10.18112/openneuro.ds003799.v1.0.0
title: MRI Lab Graz: A Two-Week Running Intervention Reduces Symptoms Related to Depression and Increases Hippocampal Volume in Young Adults
DOI: 10.5281/zenodo.5267166
title: Dataset related to article "FOCAL CORTICAL DYSPLASIA IIIA IN HIPPOCAMPAL SCLEROSIS-ASSOCIATED EPILEPSY: ANATOMO-ELECTRO-CLINICAL PROFILE AND SURGICAL RESULTS FROM A MULTICENTRIC RETROSPECTIVE STUDY"

description: XLSX clinical database: General characteristics, neuroimaging, and electroclinical features of BESTA patients included in the study
description: STUDY SUPPORTED BY FONDAZIONE LEGA ITALIANA CONTRO L'EPILESSIA-ONLUS WITH A GRANT TO MEYER HOSPITAL, FLORENCE, ITALY, FOR THE PROJECT "ANALYSIS OF PREDICTORS OF SEIZURE OUTCOME AFTER TEMPORAL LOBE EPILEPSY SURGERY IN CHILDREN AND ADULTS: IMPLICATIONS FOR SURGICAL STRATEGY" (CALL 2019).
DOI: 10.5281/zenodo.5267165
title: Dataset related to article "FOCAL CORTICAL DYSPLASIA IIIA IN HIPPOCAMPAL SCLEROSIS-ASSOCIATED EPILEPSY: ANATOMO-ELECTRO-CLINICAL PROFILE AND SURGICAL RESULTS FROM A MULTICENTRIC RETROSPECTIVE STUDY"

description: XLSX clinical database: General characteristics, neuroimaging, and electroclinical features of BESTA patients included in the study
description: STUDY SUPPORTED BY FONDAZIONE LEGA ITALIANA CONTRO L'EPILESSIA-ONLUS WITH A GRANT TO MEYER HOSPITAL, FLORENCE, ITALY, FOR THE PROJECT "ANALYSIS OF PREDICTORS OF SEIZURE OUTCOME AFTER TEMPORAL LOBE EPILEPSY SURGERY IN CHILDREN AND ADULTS: IMPLICATIONS FOR SURGICAL STRATEGY" (CALL 2019).
DOI: 10.5281/zenodo.5493844
title: Simulation of integrated speed-accuracy measures when speed-accuracy trade-off is present

description: The uploaded files contain simulation results and some software to generate these results obtained in monte carlo simulations that were designed to test whether and under which conditions integrated speed-accuracy measures are sensitive to speed accuracy trade-off. These simulations are extensively described and discussed in the following publication: Vandierendonck, A. (2021). On the Utility of Integrated Speed-Accuracy Measures when Speed-Accuracy Trade-off is present. Journal of Cognition. DOI: https://doi.org/10.5334/joc.154 The added README contains detailed information on how to use the simulation data and the included software. This version corrects for errors in the scripts used to calculate the Balanced Integration Score (BIS).
description: {"references": ["Vandierendonck, A. (2017). A comparison of methods to combine speed and accuracy measures of performance: A rejoinder on the binning procedure. Behavior Research Methods, 49 (2), 653\u2013673. doi:10.3758/s13428-016-0721-5", "Vandierendonck, A. (2018). Further tests of the utility of integrated speed-accuracy measures in task switching. Journal of Cognition, 1(8), 1\u201316. doi:10.5334/joc.6"]}
DOI: 10.5281/zenodo.4557492
title: Simulation of integrated speed-accuracy measures when speed-accuracy trade-off is present

description: The uploaded files contain simulation results and some software to generate these results obtained in monte carlo simulations that were designed to test whether and under which conditions integrated speed-accuracy measures are sensitive to speed accuracy trade-off. These simulations are extensively described and discussed in the following publication: Vandierendonck, A. (2021). On the Utility of Integrated Speed-Accuracy Measures when Speed-Accuracy Trade-off is present. Journal of Cognition. DOI: https://doi.org/10.5334/joc.154 The added README contains detailed information on how to use the simulation data and the included software. This version corrects for errors in the scripts used to calculate the Balanced Integration Score (BIS).
description: {"references": ["Vandierendonck, A. (2017). A comparison of methods to combine speed and accuracy measures of performance: A rejoinder on the binning procedure. Behavior Research Methods, 49 (2), 653\u2013673. doi:10.3758/s13428-016-0721-5", "Vandierendonck, A. (2018). Further tests of the utility of integrated speed-accuracy measures in task switching. Journal of Cognition, 1(8), 1\u201316. doi:10.5334/joc.6"]}
DOI: 10.5281/zenodo.5493969
title: dataset related to article: "Spastic paraplegia type 46: novel and recurrent GBA2 gene variants in a compound heterozygous Italian patient with spastic ataxia phenotype"

description: Dataset contains Genetic data in VCF format of an Italian patient with spastic ataxia phenotype
description: Stud supperted by grant CP 20/2018 (Care-4NeuroRare) from Fondazione Regionale per la Ricerca Biomedica (FRRB) to F.T.
DOI: 10.5281/zenodo.5493968
title: dataset related to article: "Spastic paraplegia type 46: novel and recurrent GBA2 gene variants in a compound heterozygous Italian patient with spastic ataxia phenotype"

description: Dataset contains Genetic data in VCF format of an Italian patient with spastic ataxia phenotype
description: Stud supperted by grant CP 20/2018 (Care-4NeuroRare) from Fondazione Regionale per la Ricerca Biomedica (FRRB) to F.T.
DOI: 10.6084/m9.figshare.16586234
title: Data of CNN Pulse Classification

description: Real and synthetic data used in the study of "Identification of Near-Fault Impulsive Signals andTheir Initiation and Termination Positions withConvolutional Neural Networks" published in Geosciences (ISSN:20763263).
DOI: 10.5281/zenodo.5494054
title: Proccessed data for Trend Validation of Metabolic Models Against Measurements Using Indirect Calorimetry

description: A cleaned data set used to validate metabolism models in a muscuskeletal modeling software.<br> The dataset contains 240 rows and 18 columns. Labels: AnyMet = Metabolic output by the modelling software. Calculated as the mean energy cost per repetition [J] . VynMet = Metabolic output by the indirect calorimetry system (Vyntus CPX). Calculated as the mean energy cost per repetition [J]. rest_energy = total energy cost during rest [J]. Measured with Indirect caliometry rest_time = total time of rest [min] Work = Energy cost times the displacement per rep [J]. watt = Work divided by total duration of a repetition [J/s] extension time = duration of the extension part of the movement [s] flexion time = duration of the flexion part of the movement [s] bw = bodyweight [kg] height [m] CV = coefficient of variation for the measured rest_energy. model = model type used for AnyMet. Subject Contraction = Contraction type performed intensity = Intensity to overcome created by the dynamometer. mech_watt_kg = mechcanical watt, watt divided by bodyweight any_met_watt_kg = watt pr kg: (AnyMet / bw) / (extension time + flexion time) vyn_met_watt_kg = watt pr kg: (VynMet / bw) / (extension time + flexion time)<br> <br> There is also a zip file containing the raw data from the dynanometer and the Vyntus PGE system.
DOI: 10.5281/zenodo.4729304
title: Proccessed data for Trend Validation of Metabolic Models Against Measurements Using Indirect Calorimetry

description: A cleaned data set used to validate metabolism models in a muscuskeletal modeling software.<br> The dataset contains 240 rows and 18 columns. Labels: AnyMet = Metabolic output by the modelling software. Calculated as the mean energy cost per repetition [J] . VynMet = Metabolic output by the indirect calorimetry system (Vyntus CPX). Calculated as the mean energy cost per repetition [J]. rest_energy = total energy cost during rest [J]. Measured with Indirect caliometry rest_time = total time of rest [min] Work = Energy cost times the displacement per rep [J]. watt = Work divided by total duration of a repetition [J/s] extension time = duration of the extension part of the movement [s] flexion time = duration of the flexion part of the movement [s] bw = bodyweight [kg] height [m] CV = coefficient of variation for the measured rest_energy. model = model type used for AnyMet. Subject Contraction = Contraction type performed intensity = Intensity to overcome created by the dynamometer. mech_watt_kg = mechcanical watt, watt divided by bodyweight any_met_watt_kg = watt pr kg: (AnyMet / bw) / (extension time + flexion time) vyn_met_watt_kg = watt pr kg: (VynMet / bw) / (extension time + flexion time)<br> <br> There is also a zip file containing the raw data from the dynanometer and the Vyntus PGE system.
DOI: 10.6084/m9.figshare.12003330
title: Anaerobic co-digestion of winery waste: comparative assessment of grape marc waste and lees derived from organic crops

description: Grapes are one the world’s leading fruit crops, with close to 77 million tonnes harvested per year. Grapes are commonly used to produce wine; a process which generates different wastes such as grape mark waste (skins, seeds and stalks), lees and other residues. This study evaluates the treatment of winery waste derived from ecological cultivation by anaerobic digestion to produce energy in the form of methane. Grape marc waste, Verdejo and Pedro Ximenez (PX) wine lees were digested under stable conditions at mesophilic conditions. The PX lees showed the highest methane yield production (433 L<sub>STP</sub> CH<sub>4</sub>/kg VS) with a maximum OLR of 4.58 kg VS/m<sup>3</sup>·d. In the evaluated range the process was stable with a range of biodegradability of 51–79%. Due to different types of winery waste are generated at consecutive stages of the main production process, the sequential treatment of PX lees, Verdejo lees and grape marc waste in the same anaerobic digester could be an interesting option. This procedure would facilitate the management of the residual streams generated in wineries during the year and promotes the circular economy in the Montilla-Moriles Protected Designation of Origin.
DOI: 10.6084/m9.figshare.12003330.v1
title: Anaerobic co-digestion of winery waste: comparative assessment of grape marc waste and lees derived from organic crops

description: Grapes are one the world’s leading fruit crops, with close to 77 million tonnes harvested per year. Grapes are commonly used to produce wine; a process which generates different wastes such as grape mark waste (skins, seeds and stalks), lees and other residues. This study evaluates the treatment of winery waste derived from ecological cultivation by anaerobic digestion to produce energy in the form of methane. Grape marc waste, Verdejo and Pedro Ximenez (PX) wine lees were digested under stable conditions at mesophilic conditions. The PX lees showed the highest methane yield production (433 L<sub>STP</sub> CH<sub>4</sub>/kg VS) with a maximum OLR of 4.58 kg VS/m<sup>3</sup>·d. In the evaluated range the process was stable with a range of biodegradability of 51–79%. Due to different types of winery waste are generated at consecutive stages of the main production process, the sequential treatment of PX lees, Verdejo lees and grape marc waste in the same anaerobic digester could be an interesting option. This procedure would facilitate the management of the residual streams generated in wineries during the year and promotes the circular economy in the Montilla-Moriles Protected Designation of Origin.
DOI: 10.5281/zenodo.5493680
title: Ranglistenpositionwerte in ägyptischen Texten

description: Ranglistenpositionswerte von Wörtern in ägyptischen Texte, die mehr als 100 Wörter lang sind. Der Ranglistenpositionswert ist ein Maß für die Relevanz eines Wortes innerhalb eines Textes anhand der Wortfrequenz. Datengrundlage: Schweitzer, Simon D. (2019). simondschweitzer/aed-tei: AED-TEI Version 1.0 (v1.0) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.3580939 Lizenz: CC-BY-SA 4.0
DOI: 10.5281/zenodo.5493679
title: Ranglistenpositionwerte in ägyptischen Texten

description: Ranglistenpositionswerte von Wörtern in ägyptischen Texte, die mehr als 100 Wörter lang sind. Der Ranglistenpositionswert ist ein Maß für die Relevanz eines Wortes innerhalb eines Textes anhand der Wortfrequenz. Datengrundlage: Schweitzer, Simon D. (2019). simondschweitzer/aed-tei: AED-TEI Version 1.0 (v1.0) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.3580939 Lizenz: CC-BY-SA 4.0
DOI: 10.48366/r141810
title: Genetic intraspecific variation in regional and local scale Lepidoptera species inventories using DNA barcoding

description: Genetic intraspecific variation in regional and local scale Lepidoptera species inventories using DNA barcoding Comparison between intraspecific genetic variation vs interspecific genetic divergence in regional and local scale (50 000 Km²) in Lepidoptera inventories
DOI: 10.6084/m9.figshare.16586261.v1
title: Identification of pheromone components of Plagionotus detri-tus

description: The longhorn beetle <i>Plagionotus detritus</i> (L.) occurs from Europe to the Middle East. Our principal aim was to identify the male-produced aggregation-sex attractant pheromone of this species. A pheromone-based monitoring system could support plant protection in areas where it might become a pest, and natural conservation in areas where it is endangered. Headspace volatiles were collected from live beetles and analyzed by coupled gas chromatography-electroantennogram detection, and gas chromatography-mass spectrometry. Two components of the extracts that elicited responses from antennae of <i>P. detritus</i>, (<i>R</i>)-3-hydroxyhexan-2-one and (<i>S</i>)-2-hydroxyoctan-3-one<i> </i>were identified, synthesized, and field tested. The blend of the two components attracted both sexes of <i>P. detritus </i>in field bioassays, and a predatory clerid beetle, <i>Clerus mutillarius</i> F., was attracted by both compounds. Another longhorn beetle species, <i>Xylotrechus antilope</i> Schönh. was significantly attracted to traps baited with (<i>S</i>)-2-hydroxyoctan-3-one alone or the blend containing this compound. These results show that the pheromone components and blends play key roles in longhorn beetle life history and ecology, and the community of species with which they live.
DOI: 10.6084/m9.figshare.16586261
title: Identification of pheromone components of Plagionotus detri-tus

description: The longhorn beetle <i>Plagionotus detritus</i> (L.) occurs from Europe to the Middle East. Our principal aim was to identify the male-produced aggregation-sex attractant pheromone of this species. A pheromone-based monitoring system could support plant protection in areas where it might become a pest, and natural conservation in areas where it is endangered. Headspace volatiles were collected from live beetles and analyzed by coupled gas chromatography-electroantennogram detection, and gas chromatography-mass spectrometry. Two components of the extracts that elicited responses from antennae of <i>P. detritus</i>, (<i>R</i>)-3-hydroxyhexan-2-one and (<i>S</i>)-2-hydroxyoctan-3-one<i> </i>were identified, synthesized, and field tested. The blend of the two components attracted both sexes of <i>P. detritus </i>in field bioassays, and a predatory clerid beetle, <i>Clerus mutillarius</i> F., was attracted by both compounds. Another longhorn beetle species, <i>Xylotrechus antilope</i> Schönh. was significantly attracted to traps baited with (<i>S</i>)-2-hydroxyoctan-3-one alone or the blend containing this compound. These results show that the pheromone components and blends play key roles in longhorn beetle life history and ecology, and the community of species with which they live.
DOI: 10.5281/zenodo.5494394
title: Simulating Static and Dynamic Properties of Magnetic Molecules with Prototype Quantum Computers. Open data set

description: Data supporting the original figures 1, 2, 3, 4, 5 of the related publication.
DOI: 10.5281/zenodo.5494393
title: Simulating Static and Dynamic Properties of Magnetic Molecules with Prototype Quantum Computers. Open data set

description: Data supporting the original figures 1, 2, 3, 4, 5 of the related publication.
DOI: 10.6084/m9.figshare.16586267
title: FOB microscopy - HeLa P525L GFP-FUS Phototoxicity

description: Fluorescence and Brillouin microscopy data of HeLa P525L GFP-FUS cells after arsenite treatment measured with different setups (using 780 nm and 532 nm illumination source) and acquisition schemes.<br>
DOI: 10.6084/m9.figshare.16586267.v1
title: FOB microscopy - HeLa P525L GFP-FUS Phototoxicity

description: Fluorescence and Brillouin microscopy data of HeLa P525L GFP-FUS cells after arsenite treatment measured with different setups (using 780 nm and 532 nm illumination source) and acquisition schemes.<br>
DOI: 10.5281/zenodo.5494410
title: Opinion of ethics committee representatives on the use of social networks and new technologies in clinical trials. Nominal group

description: Nominal group database to find out the opinion of ethics committee representatives on the use of social networks and new technologies in clinical trials.
DOI: 10.5281/zenodo.5094326
title: Opinion of ethics committee representatives on the use of social networks and new technologies in clinical trials. Nominal group

description: Nominal group database to find out the opinion of ethics committee representatives on the use of social networks and new technologies in clinical trials.
DOI: 10.25625/7oz1sp/cuoq6k
title: smartshark_2_1.agz
DOI: 10.5281/zenodo.5494148
title: dataset relared to article "Childhood‑onset dystonia‑causing KMT2B variants result in a distinctive genomic hypermethylation profile"

description: Sanger sequences (.abi files) of all patients of Fondazione Besta cohort.
DOI: 10.5281/zenodo.5494147
title: dataset relared to article "Childhood‑onset dystonia‑causing KMT2B variants result in a distinctive genomic hypermethylation profile"

description: Sanger sequences (.abi files) of all patients of Fondazione Besta cohort.