cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.qbzkh18pw
title: Short-term interest rate estimates based on futures markets

description: This data is the month-end data of the time series from January 2009 to
 March 2023 for four commodities such as gold soybean crude oil and natural
 gas. These time series data can be used to estimate the market's
 short-term interest rate along with the Vasicek model and joint radiation
 term structure model.
description: # Short-term interest rate estimates based on futures markets
 **Abstract**: This data is the month-end data of the time series from
 January 2009 to March 2023 for four commodities such as gold soybean crude
 oil and natural gas. These time series data can be used to estimate the
 market short-term interest rate together with the Vasicek model and the
 joint radiation term structure model **Usage**: The data in Table 1 and
 Table 2 can be read into the established interest rate estimation model
 code using python to estimate the short-term interest rate **Data
 structure**: month-end time series data; The xlsx tables mainly include
 Table 1 and Table 2 **Source**: Bloomberg Data Terminal Specific variable
 definition: * The gold futures price is the futures price data from the
 end of January 2009 to the end of March 2023, in ounces per dollar *
 Soybean futures prices are futures price data from the end of January 2009
 to the end of March 2023, in tons per dollar * Natural gas futures prices
 are futures price data from the end of January 2009 to the end of March
 2023, in units m³/ USD * Brent crude oil futures prices are futures price
 data from the end of January 2009 to the end of March 2023, in barrels per
 dollar * The gold spot price is the spot price data from the end of
 January 2009 to the end of March 2023, in ounces per dollar * The spot
 price of soybeans is the spot price data from the end of January 2009 to
 the end of March 2023, in tons/US dollar * Natural gas spot prices are for
 the period from the end of January 2009 to the end of March 2023, in units
 m³/ USD * Brent crude oil spot prices are futures price data from the end
 of January 2009 to the end of March 2023, in barrels per dollar
DOI: 10.5061/dryad.gf1vhhmvp
title: Quantification of hair cell number, ribeye b and nuclei in the zebrafish inner ear endorgans

description: The three otolithic endorgans of the inner ear are known to be involved in
 sound detection in different teleost fishes, yet their relative roles for
 auditory-vestibular functions within the same species remain unclear. In
 zebrafish (Danio rerio), saccule and utricle are thought to play key
 functions in encoding auditory and vestibular information, respectively,
 but the biological function of the lagena is not clear. We hypothesized
 that the zebrafish saccule serves as a primary auditory endorgan, making
 it more vulnerable to noise exposure, and that lagena might have an
 auditory function given its connectivity to the saccule and dominant
 vestibular function of the utricle. In this study, we compared the impact
 of acoustic trauma (continuous white noise at 168 dB for 24 h) between the
 sensory epithelia of the three otolithic endorgans. Noise treatment caused
 hair cell loss in both the saccule and lagena but not in the utricle. This
 effect was identified immediately after acoustic treatment and did not
 increase 24 h post trauma. Furthermore, hair cell loss was accompanied by
 a reduction in presynaptic activity measured based on Ribeye b presence
 but mainly in the saccule, supporting its main contribution for
 noise-induced hearing loss. Our findings support the hypothesis that the
 saccule plays a major role in sound detection and that lagena is also
 acoustically affected extending the species hearing dynamic range.
description: # Quantification of hair cell number, ribeye b and nuclei in the zebrafish
 inner ear endorgans
 [https://doi.org/10.5061/dryad.gf1vhhmvp](https://doi.org/10.5061/dryad.gf1vhhmvp) ## Description of the data and file structure Variation in the amount of hair cell bundles and Ribeye b punctua in the zebrafish inner ear endorgans (saccule, lagena and utricle) after different experimental conditions - control (no sound playback), white noise treatment (24h, at 168 dB re 1 μPa, bandwidth: 100-1500 Hz), and same noise treatment followed by 24h silent period. The file also shows the relationship between the amount of hair cell bundles and hair cell nuclei from saccules exposed to different treatments. Quantifications were based on different squared regions of 900 mm<sup>2</sup> across the sensory epithelia.
DOI: 10.15468/dl.yegtz3
title: Occurrence Download

description: A dataset containing 142 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heterostemon ellipticus",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 142 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003662-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tyymc2
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Brachyhypopomus batesi",
 "Year 2010-2026"
 ]
}

 The dataset includes 26 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003666-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.ffbg79d17
title: Data from: Macroscopic fossils from Chuanlinggou Formation of North China: Evidence for an earlier origin of multicellular algae in late Paleoproterozoic

description: The multicellular algae are the core topic for understanding the early
 life evolution on Earth. The timing of origin and cellular differentiation
 of multicellular algae, however, remains poorly constrained. The Paleo- to
 early Mesoproterozoic is a critical period, during which multicellular
 algae began to occur and started to evolve in marine environments. This
 paper reports well-preserved multicellular fossils from shales of the
 Chuanlinggou Formation in North China, with emphasis on their
 holdfast structure and putative cellular structures. These
 macroalgae fossils are reasonably diversified in this formation, and
 include Chuaria circularis, Tawuia sinensis, Tawuia robusta, Glossophyton
 ovalis, Glossophyton sp., Tuanshanzia sp., Changchengia sp., which are
 mainly preserved as carbonaceous compressions, with some in sideritized
 forms. FESEM observation reveals multicellular structures in Chuaria,
 confirming its biological attribute of multicellular eukaryote and
 providing direct evidence that multicellular algae had already originated
 by the terminal Paleoproterozoic, earlier than previous speculation. The
 Tuanshanzia sp. and Changchengia sp. developed with bare rhizome holdfast,
 suggesting their benthic sessile lifestyle in the late Paleoproterozoic
 oceanic habitat.
description: # Data from: Macroscopic fossils from Chuanlinggou Formation of North
 China: Evidence for an earlier origin of multicellular algae in late
 Paleoproterozoic
 [https://doi.org/10.5061/dryad.ffbg79d17](https://doi.org/10.5061/dryad.ffbg79d17) ## Description of the data and file structure Our Raman data of macrofossils and organic fragments is mainly through a Renishaw inVia Raman spectrometer at Resources Exploration Laboratory, China University of Geosciences (Beijing), with 514nm laser excitation. The measured Raman spectral ranges were set between 100cm<sup>-1 </sup>and 3000cm<sup>-1</sup>. The software ‘Origin 2021’ was used for spectral baseline correction, data smoothing, and fitting. Based on our collection and published literature, the data of 1715 *Chuaria* from Paleoproterozoic to Cambrian were analyzed. In this study, the *Chuaria* long axis was measured from selected specimens in our collection and in published literature as an index for *Chuaria* body-size.
DOI: 10.15468/dl.q6qq5q
title: Occurrence Download

description: A dataset containing 9872 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alocasia odora"
 ]
}

 The dataset includes 9872 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003663-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p3sv8m
title: Occurrence Download

description: A dataset containing 4417 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Aves del Parque Nacional Cumbres de Monterrey, Nuevo León, México"
 ]
}

 The dataset includes 4417 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003665-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.7sqv9s4zg
title: Data from: Three newly described species of Ziziphus from Maharashtra, India based on morphological and molecular evidence

description: Three new species of Ziziphus (Rhamnaceae) from Maharashtra, India, Z.
 bhandarii Gholave & S.P.Gaikwad, Z. naikii Gholave &
 S.P.Gaikwad, and Z. bhansalii Gholave & S.P.Gaikwad are described
 here. These species occur in isolated fragments of the Deccan thorn scrub
 forest ecoregion on the Deccan plateau. Their placement in Ziziphus is
 confirmed by molecular analyses combining ITS and trnL-F regions. Given
 this phylogeny is the most robust to date of Ziziphus, a previously
 proposed intrageneric classification was tested, and the classification
 was not supported suggesting a need for additional investigations in this
 genus. The new species are most closely related to three Indian species,
 Z. horrida Roth, Z. xylopyrus (Retz.) Willd., and Z. caracutta Buch.-Ham.
 ex Roxb, respectively, which are morphologically similar and sympatric,
 and are distinguishable from known species based on several vegetative and
 reproductive characteristics presented here. A diagnostic key to the
 Ziziphus species known to occur in Maharashtra is provided.
description: Please see the accompanying published article: Gholave et al. (2023). Three Newly Described
 Species of <em>Ziziphus</em> from Maharashtra, India Based on
 Morphological and Molecular Evidence. Systematic
 Botany.
description: Data from: Three Newly Described Species of *Ziziphus* from Maharashtra,
 India Based on Morphological and Molecular Evidence
 [https://doi.org/10.5061/dryad.7sqv9s4zg](https://doi.org/10.5061/dryad.7sqv9s4zg) Avinash R. Gholave, Asif S. Tamboli, Melissa B. Islam, Suhas K. Kadam, Sayajirao P. Gaikwad, Sanjay P. Govindwar, Yeon-Sik Choo, Jae Hong Pak Description: Aligned ITS and *trnL-F* sequences in nexus format. And the maximum likelihood best trees for the *trnL-F* spacer and the ITS regions with the maximum likelihood bootstrap values at the nodes.
DOI: 10.5061/dryad.4qrfj6qgf
title: Data from: multidimensional beta-diversity across local and regional scales in a Chinese subtropical forest: the role of forest structure

description: Beta-diversity, or the spatio-temporal variation in community composition,
 can be partitioned into turnover and nestedness components in a
 multidimensional framework. Forest structure, including comprehensive
 characteristics of vertical and horizontal complexity, strongly affects
 species composition and its spatial variation. However, the effects of
 forest structure on beta-diversity patterns in multidimensional and
 multiple-scale contexts are poorly understood. Here, we assessed
 beta-diversity at local (a 20-ha forest dynamics plot) and regional (a
 plot network composed of 19 1-ha plots) scales in a Chinese subtropical
 evergreen broad-leaved forest. We then evaluated the relative importance
 of forest structure, topography, and spatial structure on beta-diversity
 and its turnover and nestedness components in taxonomic, functional, and
 phylogenetic dimensions at local and regional scales. We derived forest
 structural parameters from both unmanned aerial vehicle light detection
 and ranging (UAV LiDAR) data and plot inventory data. Turnover component
 dominated total beta-diversity for all dimensions at the two scales. With
 the exception of some components (taxonomic and functional turnover at the
 local scale; functional nestedness at the regional scale), environmental
 factors (i.e., topography and forest structure) contributed more than pure
 spatial variation. Explanations of forest structure for beta-diversity and
 its component patterns at the local scale were higher than those at the
 regional scale. The joint effects of spatial structure and forest
 structure influenced component patterns in all dimensions (except for
 functional turnover) to some extent at the local scale, while pure forest
 structure influenced taxonomic and phylogenetic nestedness patterns to
 some extent at the regional scale. Our results highlight the importance
 and scale dependence of forest structure in shaping multidimensional
 beta-diversity and its component patterns. Clearly, further studies need
 to link forest structure directly to ecological processes (e.g.,
 asymmetric light competition and disturbance dynamics) and explore its
 roles in biodiversity maintenance.
description: # Multidimensional beta-diversity across local and regional scales in a
 Chinese subtropical forest: The role of forest structure **Includes 4
 files in Excel format:** 1. Local_beta_components.xlsx 2.
 Regional_beta_components.xlsx **Include total beta diversity and its
 turnover and nestedness components in taxonomic, functional, and
 phylogenetic dimensions at local and regional scales.** 1.
 Local_predictor.xlsx 2. Regional_predictor.xlsx **Include Forest structure
 (FS_PC1, FS_PC2), topography (topo_PC1, topo_PC2), spatial structure (x,
 x2, y, y2, xy) and simulated spatial structure (MEM variables) at local
 and regional scales.**
DOI: 10.5281/zenodo.18404416
title: Data and models supporting: Household behavior and environmental outcomes in peri-urban livestock systems

description: This repository provides the data and executable models supporting the research article “Household behavior and environmental outcomes in peri-urban livestock systems: Management and policy implications”. It includes:



Raw household survey data (N=177).

SEM model files (.AMW) for waste treatment and utilization.

Spatially explicit ABM model (.html) for policy simulation.


Detailed instructions for replication are provided in the attached README.pdf file
DOI: 10.5061/dryad.9zw3r22m8
title: The immunopathological landscape of human pre-TCRα deficiency: from rare to common variants

description: We describe humans with rare biallelic loss-of-function PTCRA variants
 impairing pre–a T cell receptor (pre-TCRa) expression. Low
 circulating naive ab T cell counts at birth persisted over time, with
 normal memory ab and high gd T cell counts. Their TCRa repertoire
 was biased, which suggests that noncanonical thymic
 differentiation pathways can rescue ab T cell development. Only a minority
 of these individuals were sick, with infection,
 lymphoproliferation, and/or autoimmunity. We also report that
 1 in 4000 individuals from the Middle East and South Asia are
 homozygous for a common hypomorphic PTCRA variant. They had
 normal circulating naive ab T cell counts but high gd T cell counts.
 Although residual pre-TCRa expression drove the differentiation
 of more ab T cells, autoimmune conditions were more frequent in
 these patients compared with the general population.
description: # The immunopathological landscape of human pre-TCRa deficiency: From rare
 to common variants Raw
 Data of *in vitro* study. ### Datasets included: 1\) Western Blot:
 Uncropped membranes of the paper's figures. We assessed the
 expression of PTCRA variants by extracting total protein from HEK293T
 cells 48 hours after transfection with the various pCMV6 plasmids encoding
 the PTCRA variants. For each conditions, we separated 20 mg of total
 protein by SDS-PAGE and immunoblotting was performed with antibodies
 against the DDK Tag (1:3000, HRP-coupled, M2, no. A8592, Sigma-Aldrich),
 PTCRA (1:3000, PA5-95578, Invitrogen), glyceraldehyde-3-phosphate
 dehydrogenase (GAPDH) (1:5000, FL335, no. sc47724 HRP, Santa Cruz
 Biotechnology) or vinculin (1:5000, EPR8185, no. ab129002, Abcam).
 Staining was detected with the Clarity Western ECL substrate (Biorad, no.
 1705061) or SuperSignal West Femto (ThermoScientific, no. 34096) with
 ChemiDoc MP (Biorad). 2\) Rawdata of PTCRA qPCR. HEK293T cells were
 transfected with an empty vector (EV) or with plasmids encoding the
 artificial gene with the WT or mutant PTCRA sequence. The RNA was
 subjected to RT-qPCR for PTCRA with a probe spanning the splice junction
 between exons 1 and 2. Data are displayed as 2−DCt values after
 normalization relative to an endogenous GUS control (DCt). Three technical
 replicates are presented for each three independent experiments.
DOI: 10.15468/dl.v3ka7x
title: Occurrence Download

description: A dataset containing 1362 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pterygoplichthys pardalis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1362 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003664-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rbzjh6
title: Occurrence Download

description: A dataset containing 579535 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Marine Nature Conservation Review (MNCR) and associated benthic marine data held and managed by JNCC"
 ]
}

 The dataset includes 579535 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003615-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.0zpc8673t
title: A perilous Malagasy triad: a spider (Vigdisia praesidens, gen. and sp. nov.) and an ant compete for termite food

description: Ants and termites are insect groups that make up most of the insect
 biomass in tropical ecosystems. Due to their social structure and
 abundance, they are some of the most bountiful prey available to other
 invertebrates such as spiders. However, ants and termites possess
 dangerous defense strategies, thus limiting their accessibility to general
 predators. Here, we report on an unexpected finding of a three-way
 predator-prey-kleptoparasite interaction in Madagascar among a termite
 Nasutitermes sp. (prey), a previously unknown theridiid spider Vigdisia
 praesidens gen. nov., sp. nov. (predator), and an ant Pheidole spinosa
 (kleptoparasite). Our field observations suggest that the spiders are able
 to detect a damaged termite nest from a distance to disperse onto it and
 prey on its residents. Kleptoparasitic ants also arrive on the scene to
 steal from the spiders their termite prey. Both the spider and the ant
 seem to possess some degree of behavioural prey specialisation for
 Nasutitermes termites. The here described ecological interaction warrants
 further study to better understand the exploitation of signals by such
 phylogenetically diverse arthropods.
description: # A Perilous Malagasy Triad: Spider and Ant Compete for Termite Food Dryad
 DOI: 10.5061/dryad.0zpc8673t See the related article published
 here: [https://doi.org/10.1080/03014223.2024.2373185](https://doi.org/10.1080/03014223.2024.2373185) ## Description of the data and file structure This is the supplementary material of the publication titled A perilous Malagasy triad: a spider (*Vigdisia praesidens*, gen. and sp. nov.) and an ant compete for termite food, published in the jorunal *New Zealand Journal of Zoology*. The supporting information published here consists of one .fasta file with COI sequences reported on in the paper and four supporting videos files that show the behavior described in the paper. Supporting video 1: First incidence of a spider, V. praesidens new species, catching a termite. Supporting video 2: Two V. praesidens new species spiders fighting for already caught termite prey. Supporting video 3: Pheidole spinosa ants steal already caught termites from V. praesidens new species spiders. Supporting video 4: Pheidole spinosa ants steal already caught termites from V. praesidens new species spiders. ## Description of the data and file structure The supporting information published here consists of one .fasta file with COI sequences reported on in the paper and of four supporting videos files that show the behavior describd in the paper.
DOI: 10.5061/dryad.bg79cnpgv
title: Data from: Predictions about reward outcomes in rhesus monkeys

description: Human infants and nonhuman animals respond to surprising events by looking
 longer at unexpected-than-expected situations. These looking responses
 provide core cognitive evidence that nonverbal minds make predictions
 about possible outcomes and detect when these predictions fail to match
 reality. We propose that this phenomenon has crucial parallels with the
 processes of reward prediction error, indexing the difference between
 expected and actual reward outcomes. Most work on reward prediction errors
 to date involves neurobiological techniques that cannot be implemented in
 many relevant populations, so we developed a novel behavioral task to
 assess monkeys’ predictions about reward outcomes using looking time
 responses. In Study 1, we tested how semi-free-ranging monkeys (n = 210)
 responded to positive error (more rewards than expected), negative error
 (less rewards than expected), and number control. We found that monkeys
 looked longer at a given reward when it was unexpectedly large or small,
 compared to when the same quantity was expected. In Study 2, we compared
 responses in the positive error condition in monkeys ranging from infancy
 to old age (n = 363), to assess lifespan changes in sensitivity to reward
 predictions. We found that adolescent monkeys showed heightened responses
 to unexpected rewards, similar to patterns seen in humans, but showed no
 changes during aging. These results suggest that monkeys’ looking
 responses can be used to track their predictions about rewards and that
 monkeys share some developmental signatures of reward sensitivity with
 humans, providing a new approach to accessing cognitive processes
 underlying reward-based decision-making.
description: See methods in the manuscript for all
 details.
description: # READ ME Data and analysis scripts from: Predictions about reward
 outcomes in rhesus monkeys Study Authors: Y. Huang, H. Chang, L.R. Santos,
 & A.G. Rosati Contact: rosati@umich.edu This data set consists of
 two data files (.xlsx format) for the two studies reported in this work.
 For each task, there is a key tab in the file defining each variation
 reported in the main data tab. The files are: 1. DATA Huang et al Rhesus
 Prediction Study 1 2. DATA Huang et al Rhesus Prediction Study 2 For each
 data file, there is a corresponding R analysis script. The analysis script
 files are: 1. SCRIPT Huang et al Rhesus Prediction Study 1 2. SCRIPT Huang
 et al Rhesus Prediction Study 2