cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3966749
title: Data from: Trade-off between standing biomass and productivity in species-rich tropical forest: evidence, explanations and implications

description: These files are the R code and plot data files used for calculating species population turnover of biomass and abundance in a tropical forest plot. This dataset is a processed subset of the original dataset used in our analysis of biomass turnover across tree populations as demonstrated in the main paper. Readers interested in using the Pasoh 50-ha plot data for purposes other than reviewing our analysis are advised to contact the Forest Research Institute Malaysia (FRIM) and the Center for Tropical Forest Science-Forest Global Earth Observatory (CTFS-Forest GEO), Smithsonian Tropical Research Institute.
DOI: 10.6084/m9.figshare.13114619
title: BIOL3250 Field Experiment: Comparing Vegetation Composition in a High Disturbance vs Low Disturbance area

description: This data was collected to compare species composition in two different disturbed envrironments- one with low traffic, the other with high traffic. The experiment aims to determine if a high-traffic disturbed area has more non-native species than a low-traffic one. We also aim to determine if one area has a higher species diversity than the other. Plants were identified using iNaturalist and Newcomb's Wildflower Guide. Randomization was used to select transect areas and quadrats. All data was collected in Biigtigong Nishnaabeg, ON and Pukaskwa National Park.
DOI: 10.6084/m9.figshare.13114619.v1
title: BIOL3250 Field Experiment: Comparing Vegetation Composition in a High Disturbance vs Low Disturbance area

description: This data was collected to compare species composition in two different disturbed envrironments- one with low traffic, the other with high traffic. The experiment aims to determine if a high-traffic disturbed area has more non-native species than a low-traffic one. We also aim to determine if one area has a higher species diversity than the other. Plants were identified using iNaturalist and Newcomb's Wildflower Guide. Randomization was used to select transect areas and quadrats. All data was collected in Biigtigong Nishnaabeg, ON and Pukaskwa National Park.
DOI: 10.13023/kgs.data.2020.02
title: New Surficial Geologic Mapping along the I-65 Corridor in Bullitt, Hardin, and Nelson Counties, Kentucky

description: This project presents new surficial geologic mapping that will address immediate societal needs and support new scientific discovery in an area of west-central Kentucky prioritized with the guidance of the Kentucky State Geological Mapping Advisory Committee (KSGMAC). The new mapping presented represents four new 1:24,000-scale (or greater) surficial geologic maps located along the actively developing I-65 corridor south of the Louisville metropolitan area. The study area is also situated in a geologically unique area that will provide an opportunity to examine relationships of surficial deposits to groundwater resources, geologic hazards (radon, sinkholes, and landslides), and Quaternary landscape evolution of the Midwest United States. This project has been designed to fulfill the long-range mapping plan of the Kentucky Geological Survey and the KSGMAC, will build upon previously funded (FY2013-2014, FY2014-15, FY2015-16, FY2018-2019) U.S. Geological Survey STATEMAP projects along the I-65 corridor, and provide detailed surficial geologic datasets for Bullitt County and Hardin County compilation maps.
DOI: 10.6084/m9.figshare.12469655
title: Silhouette Images for static Occlusion Analysis

description: The data is made for static occlusion analysis, there is 133 subjects involved and each subject consists with 8 sequences where 4 sequences belong to normal walking without occlusion and other 4 sequence made with static occlusion. This is a data set of normalized silhouette images.<br>That data is created where the configuration camera is similar to Powershot-SX430-IS.
DOI: 10.6084/m9.figshare.12469655.v2
title: Silhouette Images for static Occlusion Analysis

description: The data is made for static occlusion analysis, there is 133 subjects involved and each subject consists with 8 sequences where 4 sequences belong to normal walking without occlusion and other 4 sequence made with static occlusion. This is a data set of normalized silhouette images.<br>That data is created where the configuration camera is similar to Powershot-SX430-IS.
DOI: 10.6084/m9.figshare.12469655.v1
title: Silhouette_frames_Selected_big_blob_Extracted_Centered_Alinged_Directed_splitted_Alinged_Directed.rar

description: The data is made for static occlusion analysis, there are 133 subjects involved and each subject consists with 8 sequences where 4 sequences belong to normal walking without occlusion and other 4 sequence made with static occlusion. This is a set of normalized silhouette sequence.<br>That data is created through personal camera and configuration of camera similar to Powershot-SX430-IS.
DOI: 10.5281/zenodo.4042844
title: Wind-generated Gravity Waves Retrieval from Sea Surface Elevation by Airborne Ka-band Interferometric Altimeter

description: This dataset contains WSSE simulation data , AirKaIA data and sea state data used in the paper "Wind-generated Gravity Waves Retrieval from Sea Surface Elevation by Airborne Ka-band Interferometric Altimeter".
DOI: 10.5281/zenodo.4042843
title: Wind-generated Gravity Waves Retrieval from Sea Surface Elevation by Airborne Ka-band Interferometric Altimeter

description: This dataset contains WSSE simulation data , AirKaIA data and sea state data used in the paper "Wind-generated Gravity Waves Retrieval from Sea Surface Elevation by Airborne Ka-band Interferometric Altimeter".
DOI: 10.5519/qd.vimlrjs0
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (4662895 records)
DOI: 10.6084/m9.figshare.11400552
title: meta diversity on soil N

description: Meta analysis about diversity on N<br>
DOI: 10.6084/m9.figshare.13114634
title: Proteome database of Listeria innocua ATCC 33091

description: <i>Listeria innocua </i>is a Gram-positive, and facultative anaerobic bacterium. Common in soil and water, the bacterium could also cause opportunistic infections in humans. Ability to form biofilms marks it of special concern given that biofilm may result in chronic infections in the human body. This work presents the proteome database of <i>L. innocua</i> ATCC 33091 by parsing its annotated proteome downloaded from UniProt. Comprising protein name and amino acid sequence together with calculated variables such as number of residues, molecular weight, and nucleotide sequence of each protein in the proteome of the bacterium, the resource should find use in further delineating the molecular mechanisms in pathogenesis of this opportunistic pathogen.
DOI: 10.6084/m9.figshare.13114634.v1
title: Proteome database of Listeria innocua ATCC 33091

description: <i>Listeria innocua </i>is a Gram-positive, and facultative anaerobic bacterium. Common in soil and water, the bacterium could also cause opportunistic infections in humans. Ability to form biofilms marks it of special concern given that biofilm may result in chronic infections in the human body. This work presents the proteome database of <i>L. innocua</i> ATCC 33091 by parsing its annotated proteome downloaded from UniProt. Comprising protein name and amino acid sequence together with calculated variables such as number of residues, molecular weight, and nucleotide sequence of each protein in the proteome of the bacterium, the resource should find use in further delineating the molecular mechanisms in pathogenesis of this opportunistic pathogen.
DOI: 10.7910/dvn/qxby8p
title: TESTING

description: text goes here...
DOI: 10.6084/m9.figshare.13110758.v1
title: R0309_20191120a_videos

description: Rat 0309, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.13114637
title: A comparative analysis on a non-linear microbial and a linear model in simulating soil heterotrophic respiration in grassland

description: JGR-Biogeosciences
DOI: 10.6084/m9.figshare.13114637.v1
title: A comparative analysis on a non-linear microbial and a linear model in simulating soil heterotrophic respiration in grassland

description: JGR-Biogeosciences
DOI: 10.6084/m9.figshare.6870101
title: JARVIS-ML-CFID-descriptors and material properties

description: Classical force-field inspired descriptors (CFID) for more than 35000 materials and their material properties such as bandgap, formation energies, modulus of elasticity etc.<br>See JARVIS-ML:https://www.ctcms.nist.gov/jarvisml/<br>https://jarvis.nist.gov/<br><br>########################################Example:import os,jsonimport pandas as pdf = open(os.path.join(os.getcwd(),'jml_3d-4-26-2020.json'),'r')dataml=json.load(f)f.close()df=pd.DataFrame(dataml) <br><pre>typical_data_ranges = {'formation_energy_peratom': [-5, 5], 'optb88vdw_bandgap': [0, 10], 'mbj_bandgap': [0, 10], 'bulk_modulus_kv': [0, 250], 'shear_modulus_gv': [0, 250], 'epsx': [0, 60], 'epsy': [0, 60], 'epsz': [0, 60], 'mepsx': [0, 60], 'mepsy': [0, 60], 'mepsz': [0, 60], 'n-Seebeck': [-600, 10], 'n-powerfact': [0, 5000], 'p-Seebeck': [-10, 600], 'p-powerfact': [0, 5000], 'slme': [0, 40], 'spillage': [0, 4], 'encut': [0, 2000], 'kpoint_length_unit': [0, 200], 'dfpt_piezo_max_dielectric': [0, 100], 'dfpt_piezo_max_dij': [0, 3000], 'dfpt_piezo_max_eij': [0, 10], 'ehull': [0, 1], 'electron_avg_effective_masses_300K': [0, 3], 'hole_avg_effective_masses_300K': [0, 3], 'exfoliation_energy': [0, 1000], 'magmom_oszicar': [0, 10], 'max_ir_mode': [0, 4000], 'total_energy_per_atom': [-10, 3]}</pre><br>import numpy as np%matplotlib inlineimport matplotlib.pyplot as pltval=np.array(df['formation_energy_peratom'].replace('na',np.nan).dropna().values,dtype='float')plt.hist(val,bins=np.arange(-4,4,.5))<br>#########################################For more details about using the dataset, use the jupyter-notebooks:https://github.com/usnistgov/jarvis
DOI: 10.25919/5f8e510811a6e
title: Parkes observations for project P737 semester 2020APRS_12

description: The aim of this proposal is to carry out tests of the new backend instruments which cannot be carried out during standard maintenance periods. The scheduled time is used to measure beam shapes, determine polarisation calibration solutions and commission the National Facility observing modes for the new wide-band receiver.
DOI: 10.5281/zenodo.4081952
title: Co-localization and cluster analysis data for paper "Dynamic regulation of CTCF stability and sub-nuclear localization in response to stress"

description: This datasets contains all data for the co-localization and cluster analysis included in the following paper<br> "Dynamic regulation of CTCF stability and sub-nuclear localization in response to stress"
DOI: 10.5281/zenodo.4081951
title: Co-localization and cluster analysis data for paper "Dynamic regulation of CTCF stability and sub-nuclear localization in response to stress"

description: This datasets contains all data for the co-localization and cluster analysis included in the following paper<br> "Dynamic regulation of CTCF stability and sub-nuclear localization in response to stress"
DOI: 10.15472/vg8fss
title: Ictiofauna presente en fuentes hídricas de los municipios Tadó, Istmina y Condoto (Chocó) - 2010

description: Este estudio muestra las especies ictiológicas presentes en fuentes hídricas de tres municipios de la subregión del San Juan, Chocó. Los municipios seleccionados fueron Tadó, Istmina y Condoto. Allí se hicieron capturas y se logró establecer un listado de especies que muestran la calidad de dichas fuentes hídricas.
DOI: 10.21227/e1dj-g876
title: LSstab Results

description: Results(including reported and extra results) for LSstab. Please refer to our paper "Efficient real-time video stabilization with a novel least squares formulation and parallel AC-RANSAC".
DOI: 10.21227/tw4r-gg23
title: LSstab Results

description: Results(including reported and extra results) for LSstab. Please refer to our paper "Efficient real-time video stabilization with a novel least squares formulation and parallel AC-RANSAC".
DOI: 10.5281/zenodo.4107733
title: Coral monitoring in northwest Australia with environmental DNA metabarcoding using a curated reference database for optimised detection

description: Raw MiSeq sequencing data from coral eDNA metabarcoding survey and development of tissue reference material. MSRun368: CoralITS2_acro for water and tissue samples MSRun315: CoralITS2 for tissue samples MSRun306: CoralITS2 for water samples
DOI: 10.6084/m9.figshare.13114758
title: Additional file 6 of Development, testing and use of data extraction forms in systematic reviews: a review of methodological guidance

description: Additional file 6. Primary analysis
DOI: 10.6084/m9.figshare.13114758.v1
title: Additional file 6 of Development, testing and use of data extraction forms in systematic reviews: a review of methodological guidance

description: Additional file 6. Primary analysis
DOI: 10.25919/5f8e5c067bb14
title: Parkes observations for project P1041 semester 2020APRS_20

description: We recently discovered five millisecond pulsars (MSPs) in the globular cluster Omega Centauri. This is the first pulsar discovery in this globular cluster. Four of these pulsars are isolated with spin periods of 4.1, 4.2, 4.6 and 6.8ms. The fifth has a spin period of 4.8ms and is in an eclipsing binary system with an orbital period of 2.1 hours. We propose to carry out a timing campaign of these new pulsars in order to study the dynamics in the core of Omega Centauri, to reveal the origin of Gamma-ray emission from the core, and to probe the ionised interstellar medium in Omega Centauri. Our proposed observations will also enable us to carry out deeper searches of pulsars in the cluster.
DOI: 10.6084/m9.figshare.13114899.v1
title: Additional file 1 of Exploring factors influencing pregnant Women’s attitudes, perceived subjective norms and perceived behavior control towards male involvement in maternal services utilization: a baseline findings from a community based interventional study from Rukwa, rural Tanzania

description: Additional file 1.
DOI: 10.6084/m9.figshare.13114899
title: Additional file 1 of Exploring factors influencing pregnant Women’s attitudes, perceived subjective norms and perceived behavior control towards male involvement in maternal services utilization: a baseline findings from a community based interventional study from Rukwa, rural Tanzania

description: Additional file 1.
DOI: 10.6084/m9.figshare.13114989
title: Additional file 4 of Implementation of homology based and non-homology based computational methods for the identification and annotation of orphan enzymes: using Mycobacterium tuberculosis H37Rv as a case study

description: Additional file 4: Supplementary Table 1 A table showing the mapping of predicted 87 missing enzymes/holes (76 putative local holes, 8 choke points, and 3 high confidence holes) to different pathways using the method FROMP [26].
DOI: 10.6084/m9.figshare.13114983
title: Additional file 2 of Implementation of homology based and non-homology based computational methods for the identification and annotation of orphan enzymes: using Mycobacterium tuberculosis H37Rv as a case study

description: Additional file 2: Supplementary File 1 List of 56 novel enzyme prediction in Mycobacterium tuberculosis H37Rv genome using the method ModEnzA [14].
DOI: 10.6084/m9.figshare.13114986
title: Additional file 3 of Implementation of homology based and non-homology based computational methods for the identification and annotation of orphan enzymes: using Mycobacterium tuberculosis H37Rv as a case study

description: Additional file 3: Supplementary File 2 List of 76 putative missing enzymes that have either in-degree or out-degree, all of which are known in Mycobacterium tuberculosis H37Rv genome.
DOI: 10.6084/m9.figshare.13114989.v1
title: Additional file 4 of Implementation of homology based and non-homology based computational methods for the identification and annotation of orphan enzymes: using Mycobacterium tuberculosis H37Rv as a case study

description: Additional file 4: Supplementary Table 1 A table showing the mapping of predicted 87 missing enzymes/holes (76 putative local holes, 8 choke points, and 3 high confidence holes) to different pathways using the method FROMP [26].
DOI: 10.6084/m9.figshare.13114986.v1
title: Additional file 3 of Implementation of homology based and non-homology based computational methods for the identification and annotation of orphan enzymes: using Mycobacterium tuberculosis H37Rv as a case study

description: Additional file 3: Supplementary File 2 List of 76 putative missing enzymes that have either in-degree or out-degree, all of which are known in Mycobacterium tuberculosis H37Rv genome.
DOI: 10.6084/m9.figshare.13114983.v1
title: Additional file 2 of Implementation of homology based and non-homology based computational methods for the identification and annotation of orphan enzymes: using Mycobacterium tuberculosis H37Rv as a case study

description: Additional file 2: Supplementary File 1 List of 56 novel enzyme prediction in Mycobacterium tuberculosis H37Rv genome using the method ModEnzA [14].
DOI: 10.6084/m9.figshare.13115021
title: Additional file 10 of Exploration of the sputum methylome and omics deconvolution by quadratic programming in molecular profiling of asthma and COPD: the road to sputum omics 2.0

description: Additional file 10. Genes whose expression was found to discriminate eosinophils, neutrophils and macrophages in asthma sputum.
DOI: 10.6084/m9.figshare.13115021.v1
title: Additional file 10 of Exploration of the sputum methylome and omics deconvolution by quadratic programming in molecular profiling of asthma and COPD: the road to sputum omics 2.0

description: Additional file 10. Genes whose expression was found to discriminate eosinophils, neutrophils and macrophages in asthma sputum.
DOI: 10.6084/m9.figshare.13115036
title: Additional file 4 of Exploration of the sputum methylome and omics deconvolution by quadratic programming in molecular profiling of asthma and COPD: the road to sputum omics 2.0

description: Additional file 4. Results of the differential methylation analyses on the gene region level.
DOI: 10.6084/m9.figshare.13115030.v1
title: Additional file 3 of Exploration of the sputum methylome and omics deconvolution by quadratic programming in molecular profiling of asthma and COPD: the road to sputum omics 2.0

description: Additional file 3. Results of the differential methylation analyses on the CpG level.
DOI: 10.6084/m9.figshare.13115036.v1
title: Additional file 4 of Exploration of the sputum methylome and omics deconvolution by quadratic programming in molecular profiling of asthma and COPD: the road to sputum omics 2.0

description: Additional file 4. Results of the differential methylation analyses on the gene region level.
DOI: 10.6084/m9.figshare.13115048.v1
title: Additional file 8 of Exploration of the sputum methylome and omics deconvolution by quadratic programming in molecular profiling of asthma and COPD: the road to sputum omics 2.0

description: Additional file 8. Results of KEGG pathway enrichment analyses of the methylation data.
DOI: 10.6084/m9.figshare.13115027
title: Additional file 2 of Exploration of the sputum methylome and omics deconvolution by quadratic programming in molecular profiling of asthma and COPD: the road to sputum omics 2.0

description: Additional file 2. Results of the differential expression analyses.
DOI: 10.6084/m9.figshare.13115039.v1
title: Additional file 5 of Exploration of the sputum methylome and omics deconvolution by quadratic programming in molecular profiling of asthma and COPD: the road to sputum omics 2.0

description: Additional file 5. Results of gene ontology enrichment analyses of the gene expression data.
DOI: 10.6084/m9.figshare.13115039
title: Additional file 5 of Exploration of the sputum methylome and omics deconvolution by quadratic programming in molecular profiling of asthma and COPD: the road to sputum omics 2.0

description: Additional file 5. Results of gene ontology enrichment analyses of the gene expression data.
DOI: 10.6084/m9.figshare.13115042
title: Additional file 6 of Exploration of the sputum methylome and omics deconvolution by quadratic programming in molecular profiling of asthma and COPD: the road to sputum omics 2.0

description: Additional file 6. Results of KEGG pathway enrichment analyses of the gene expression data.
DOI: 10.6084/m9.figshare.13115030
title: Additional file 3 of Exploration of the sputum methylome and omics deconvolution by quadratic programming in molecular profiling of asthma and COPD: the road to sputum omics 2.0

description: Additional file 3. Results of the differential methylation analyses on the CpG level.
DOI: 10.6084/m9.figshare.13115045
title: Additional file 7 of Exploration of the sputum methylome and omics deconvolution by quadratic programming in molecular profiling of asthma and COPD: the road to sputum omics 2.0

description: Additional file 7. Results of gene ontology enrichment analyses of the methylation data.
DOI: 10.6084/m9.figshare.13115051
title: Additional file 9 of Exploration of the sputum methylome and omics deconvolution by quadratic programming in molecular profiling of asthma and COPD: the road to sputum omics 2.0

description: Additional file 9. Differentially expressed genes that were found to correspond to differentially methylated genomic regions.
DOI: 10.6084/m9.figshare.13115045.v1
title: Additional file 7 of Exploration of the sputum methylome and omics deconvolution by quadratic programming in molecular profiling of asthma and COPD: the road to sputum omics 2.0

description: Additional file 7. Results of gene ontology enrichment analyses of the methylation data.
DOI: 10.6084/m9.figshare.13115051.v1
title: Additional file 9 of Exploration of the sputum methylome and omics deconvolution by quadratic programming in molecular profiling of asthma and COPD: the road to sputum omics 2.0

description: Additional file 9. Differentially expressed genes that were found to correspond to differentially methylated genomic regions.
DOI: 10.6084/m9.figshare.13115042.v1
title: Additional file 6 of Exploration of the sputum methylome and omics deconvolution by quadratic programming in molecular profiling of asthma and COPD: the road to sputum omics 2.0

description: Additional file 6. Results of KEGG pathway enrichment analyses of the gene expression data.
DOI: 10.6084/m9.figshare.13115048
title: Additional file 8 of Exploration of the sputum methylome and omics deconvolution by quadratic programming in molecular profiling of asthma and COPD: the road to sputum omics 2.0

description: Additional file 8. Results of KEGG pathway enrichment analyses of the methylation data.
DOI: 10.6084/m9.figshare.13115027.v1
title: Additional file 2 of Exploration of the sputum methylome and omics deconvolution by quadratic programming in molecular profiling of asthma and COPD: the road to sputum omics 2.0

description: Additional file 2. Results of the differential expression analyses.
DOI: 10.25919/5f8e5d6ecb417
title: Parkes observations for project P1058 semester 2020APRS_12

description: We propose to carry out a Parkes timing campaign of the new millisecond pulsar, J1431-6328, discovered by the Australian SKA Pathfinder (ASKAP) and Parkes Ultra-Wideband Low (UWL) receiver. PSR J1431-6328 has a spin period of 2.77 ms and is in a very wide binary system with an orbital period of 88 days. The relatively low mass of the companion and the long orbital period make this binary system extremely interesting for the understanding of binary evolution. The wide orbit of J1431-6328 also makes it useful for tests of the strong equivalence principle. The proposed program will allow us to better measure its binary parameters and to achieve more precise localisation of the pulsar, which is crucial for the optical follow-up of the system.