cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21692437.v1
title: Antral follicle count measured at down-regulation as predictor of ovarian response and cumulative live birth: single center analysis including 2731 long agonist IVF cycles

description: Evaluate antral follicle count measured after pituitary suppression (AFCaps) with a GnRH agonist as predictor of ovarian response and cumulative live birth (CLB). This study is a large cohort analysis of retrospective data between January 2011 and September 2020 in a tertiary-care university hospital. All first initiated IVF/ICSI cycles in women under 43 years of age for whom AFCaps was registered in our database were included. To evaluate CLB rates (CLBRs), only finalized cycles were analyzed (at least one live birth and/or all embryos transferred), excluding PGT cycles and severe male factor requiring testicular sperm extraction. AFCaps showed a good predictive ability in predicting ovarian response to ovarian stimulation. Predicting poor response, AFCaps presented an area under the receiver-operating characteristic curve (AUC<sub>ROC</sub>) of 0.85 (95% CI 0.83–0.87), for high response prediction, the AUC<sub>ROC</sub> was 0.80 (95% confidence interval [CI] 0.77–0.83). Although AFCaps was statistically higher in patients who achieved at least one live birth (13.6 ± 6.05 vs. 9.79 ± 6.33) and CLBRs per started cycle significantly increase between AFCaps quartiles (15.9%, 36.2%, 45.1% and 52.9%) its ability to predict CLBR was modest, with an AUC<sub>ROC</sub> of 0.67 (95% CI 0.65–0.69). Women undergoing their first IVF/ICSI cycle following a long agonist GnRH protocol can be counseled with AFCaps measurement about their probability of achieving poor/high response. Based on this marker physicians can personalize ovarian stimulation with the aim of optimizing ovarian response and minimizing its risks. However, AFCaps has failed to predict CLB per started IVF cycle as an isolated marker.
DOI: 10.15468/dl.2ga86n
title: Occurrence Download

description: A dataset containing 6085 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Vaccinium oxycoccos L., Vaccinium microcarpum (Turcz. ex Rupr.) Schmalh. ex Busch)",
 "BasisOfRecord is one of (Specimen, Human Observation, Occurrence evidence, Material sample, Living Specimen)",
 "HasCoordinate is true",
 "Country is one of (Canada, United States of America, Mexico)"
 ]
}

 The dataset includes 6085 records from 132 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021004-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21335/nmdc-1287454551
title: Development of Hydrography in the Greenland Sea between 1950 and 2020

description: The hydrographic and derived fields reflect the temporal development 
 of the central Greenland Sea from 1950 to 2020. 
 Measurements located within the 3000m isobath are included. 
 The primary data source is the historical data set compiled and quality controlled by Brakstad et al., 2023. 
 The historical data set was augmented with profiles from 
 Korablev et al., 2014
 Holfort, 2001
 Schauer, 2010
 Logemann, 2018
 Quadfasel,2018
 and mooring data from Budéus et al.,2020, quality controlled by Svingen et al. 2023.
 Filtering and gridding of the combined data set is described in Strehl et al., 2024.
DOI: 10.15468/dl.8gvu7y
title: Occurrence Download

description: A dataset containing 2258 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (May, June, July, August)",
 "OccurrenceStatus is Present",
 "TaxonKey is Lanius senator Linnaeus, 1758",
 "Year 2014-2024"
 ]
}

 The dataset includes 2258 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021005-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yqvhvr
title: Occurrence Download

description: A dataset containing 4030 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vaccinium cespitosum Michx.",
 "BasisOfRecord is one of (Specimen, Human Observation, Occurrence evidence, Material sample, Living Specimen)",
 "HasCoordinate is true",
 "Country is one of (Canada, United States of America, Mexico)"
 ]
}

 The dataset includes 4030 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021008-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n74eym
title: Occurrence Download

description: A dataset containing 25128 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ficaria verna Huds.",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1980",
 "Country is Germany"
 ]
}

 The dataset includes 25128 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021009-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2s8ezn
title: Occurrence Download

description: A dataset containing 12983 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Taraxacum officinale Weber ex F.H.Wigg.",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1980",
 "Country is Germany"
 ]
}

 The dataset includes 12983 records from 418 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021006-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kwvqb5
title: Occurrence Download

description: A dataset containing 2258 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (May, June, July, August)",
 "OccurrenceStatus is Present",
 "TaxonKey is Lanius senator Linnaeus, 1758",
 "Year 2014-2024"
 ]
}

 The dataset includes 2258 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021012-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xsnyy7
title: Occurrence Download

description: A dataset containing 6516 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Vaccinium membranaceum Douglas ex Torr., Vaccinium membranaceum Douglas ex Hook.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Occurrence evidence, Material sample, Living Specimen)",
 "HasCoordinate is true",
 "Country is one of (Canada, United States of America, Mexico)"
 ]
}

 The dataset includes 6516 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021010-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zrd83q
title: Occurrence Download

description: A dataset containing 2258 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (May, June, July, August)",
 "OccurrenceStatus is Present",
 "TaxonKey is Lanius senator Linnaeus, 1758",
 "Year 2014-2024"
 ]
}

 The dataset includes 2258 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021013-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11355892
title: TRADE

description: TRADE (TRuly ADversarial ad understanding Evaluation) is a new diagnostic test set consisting of 300 randomly selected image-based advertisements from the Pitt Ads dataset. Each ad is associated with 3 options: one valid explanation from the available annotations in the Pitt Ads dataset and two newly created adversarial negative explanations. TRADE is presented in the following publication; please cite it if you use the dataset in your work:



Anna Bavaresco, Alberto Testoni, and Raquel Fernández, 2024. Don't Buy it! Reassessing the Ad Understanding Abilities of Contrastive Multimodal Models. In Proceedings of the 62nd Annual Meeting of the Association for Computational Linguistics (ACL-2024). Association for Computational Linguistics.


The paper can be found here: https://aclanthology.org/2024.acl-short.77/
DOI: 10.15468/dl.xtqa5k
title: Occurrence Download

description: A dataset containing 907 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vaccinium deliciosum Piper",
 "BasisOfRecord is one of (Specimen, Human Observation, Occurrence evidence, Material sample, Living Specimen)",
 "HasCoordinate is true",
 "Country is one of (Canada, United States of America, Mexico)"
 ]
}

 The dataset includes 907 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021014-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11355891
title: TRADE

description: TRADE (TRuly ADversarial ad understanding Evaluation) is a new diagnostic test set consisting of 300 randomly selected image-based advertisements from the Pitt Ads dataset. Each ad is associated with 3 options: one valid explanation from the available annotations in the Pitt Ads dataset and two newly created adversarial negative explanations. TRADE is presented in the following publication; please cite it if you use the dataset in your work:



Anna Bavaresco, Alberto Testoni, and Raquel Fernández, 2024. Don't Buy it! Reassessing the Ad Understanding Abilities of Contrastive Multimodal Models. In Proceedings of the 62nd Annual Meeting of the Association for Computational Linguistics (ACL-2024). Association for Computational Linguistics.


The paper can be found here: https://aclanthology.org/2024.acl-short.77/
DOI: 10.5281/zenodo.14035290
title: TRADE

description: TRADE (TRuly ADversarial ad understanding Evaluation) is a new diagnostic test set consisting of 300 randomly selected image-based advertisements from the Pitt Ads dataset. Each ad is associated with 3 options: one valid explanation from the available annotations in the Pitt Ads dataset and two newly created adversarial negative explanations. TRADE is presented in the following publication; please cite it if you use the dataset in your work:



Anna Bavaresco, Alberto Testoni, and Raquel Fernández, 2024. Don't Buy it! Reassessing the Ad Understanding Abilities of Contrastive Multimodal Models. In Proceedings of the 62nd Annual Meeting of the Association for Computational Linguistics (ACL-2024). Association for Computational Linguistics.


The paper can be found here: https://aclanthology.org/2024.acl-short.77/
DOI: 10.5281/zenodo.14015651
title: Dataset and code for article "Explicit description of viral capsid subunit shapes by unfolding dihedrons"

description: This repository contains data and codes used in a paper "Explicit description of viral capsid subunit shapes by expanding dihedrons" by Toyooka et al.

- [grasshopper/] contains a GH file used in the 3D CAD Rhinoceros/Grasshopper.- [docking_axes_viper/] contains notebooks for aligning the subunit coordinates with the VIPER coordinate system (Z-axis is the 2-fold axis, 3-fold axis is on the X-axis, and 5-fold axis is on the Y-axis)

- [docking_pairwise/] contains input scipts and analysis notebooks for pairwise docking simulations for subunits  - [1stm_zdock_iter/df.jld2] data containing top docking scores and poses, and screw motion parameters  - [1stm_zdock_iter/rmsd.jld2] RMSD data of docking poses with regard to the experimental structure  - [1stm_zdock_iter/run.sh] is a batch script for conducting docking simulations with ZDOCK  - [1stm_zdock_iter/run_each.sh] is a script for a single docking simulation with a specified random seed. Called from `run.sh`  - [1stm_zdock_iter/skrew_parameters.ipynb] analyzes the result of docking simulations. Sort the results accoring to docking scores and find the skrew axis of each docking pose  - [1stm_zdock_iter/visualize.ipynb] plots the docking score and the screw axis parameters, and also calculates and plots RMSDs from the reference structure (whole-shell structure)  - [1stm_zdock_iter/ref.pdb] is a sympolic link to a refrence structure (whole-shell structure)  - [4v4m_zdock_iter/] PDB ID: 4V4M  - [6s44_zdock_iter/] PDB ID: 6S44  - [7odw_zdock_iter/] PDB ID: 7ODW  - [3r0r_zdock_iter/] PDB ID: 3R0R  - [5zju_zdock_iter/] PDB ID: 5ZJU  - [1vb4_zdock_iter/] PDB ID: 1VB4  - [1m1c_zdock_iter/] PDB ID: 1M1C  - [6r7m_zdock_iter/] PDB ID: 6R7M  - [2m99_zdock_iter/] PDB ID: 2M99
DOI: 10.15468/dl.p7ct9x
title: Occurrence Download

description: A dataset containing 1454 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vaccinium myrtillus L.",
 "BasisOfRecord is one of (Specimen, Human Observation, Occurrence evidence, Material sample, Living Specimen)",
 "HasCoordinate is true",
 "Country is one of (Canada, United States of America, Mexico)"
 ]
}

 The dataset includes 1454 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021015-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.86vct6
title: Occurrence Download

description: A dataset containing 2258 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (May, August, June, July)",
 "OccurrenceStatus is Present",
 "TaxonKey is Lanius senator Linnaeus, 1758",
 "Year 2014-2024"
 ]
}

 The dataset includes 2258 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021017-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2a95v6
title: Occurrence Download

description: A dataset containing 15675 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vaccinium parvifolium Sm.",
 "BasisOfRecord is one of (Specimen, Human Observation, Occurrence evidence, Material sample, Living Specimen)",
 "HasCoordinate is true",
 "Country is one of (Canada, United States of America, Mexico)"
 ]
}

 The dataset includes 15675 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021018-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14033484
title: Avian influenza mutations analysis -  data

description: Datasets of avian influenza mutations
description: EU; tsv; biohaw@efsa.europa.eu
DOI: 10.5281/zenodo.14033485
title: Avian influenza mutations analysis -  data

description: Datasets of avian influenza mutations
description: EU; tsv; biohaw@efsa.europa.eu
DOI: 10.15468/dl.5fjxjh
title: Occurrence Download

description: A dataset containing 2258 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (May, August, June, July)",
 "OccurrenceStatus is Present",
 "TaxonKey is Lanius senator Linnaeus, 1758",
 "Year 2014-2024"
 ]
}

 The dataset includes 2258 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021020-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h5pgqa
title: Occurrence Download

description: A dataset containing 2258 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (May, August, June, July)",
 "OccurrenceStatus is Present",
 "TaxonKey is Lanius senator Linnaeus, 1758",
 "Year 2014-2024"
 ]
}

 The dataset includes 2258 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021019-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14024970
title: Avian influenza markers

description: The spreadsheets summarizing the identified AIV zoonotic markers
description: EU; xslx; biohaw@efsa.europa.eu
DOI: 10.5281/zenodo.14024971
title: Avian influenza markers

description: The spreadsheets summarizing the identified AIV zoonotic markers
description: EU; xslx; biohaw@efsa.europa.eu
DOI: 10.15468/dl.x6jt4c
title: Occurrence Download

description: A dataset containing 2258 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (May, August, June, July)",
 "OccurrenceStatus is Present",
 "TaxonKey is Lanius senator Linnaeus, 1758",
 "Year 2014-2024"
 ]
}

 The dataset includes 2258 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021021-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.phk33g
title: Occurrence Download

description: A dataset containing 4423 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vaccinium ovalifolium Sm.",
 "BasisOfRecord is one of (Specimen, Human Observation, Occurrence evidence, Material sample, Living Specimen)",
 "HasCoordinate is true",
 "Country is one of (Canada, United States of America, Mexico)"
 ]
}

 The dataset includes 4423 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021022-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14274963
title: Ethereum Price Data Binance API (2017–Now)
DOI: 10.15468/dl.bx4m2w
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hemerocallis hybrida hort."
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007589-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e9wej7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Peronospora artemisiae-annuae L.Ling & M.C.Tai"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007590-250127130748423/datasets/export for details.
DOI: 10.15468/dl.5r7fuf
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hemerocallis hybrida hort. ex Kerbs"
 ]
}

 The dataset includes 53 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007592-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mjkuzw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bremiella artemisiae-annuae (L.Ling & M.C.Tai) J.F.Tao"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007593-250127130748423/datasets/export for details.
DOI: 10.15468/dl.27km3z
title: Occurrence Download

description: A dataset containing 59225 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salix fragilis L."
 ]
}

 The dataset includes 59225 records from 875 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007591-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.atxey8
title: Occurrence Download

description: A dataset containing 100 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Wedelia trilobata A.St.-Hil."
 ]
}

 The dataset includes 100 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007594-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fmfeqc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plasmopara artemisiae-annuae (L.Ling & M.C.Tai) Skalický"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007595-250127130748423/datasets/export for details.
DOI: 10.1594/pangaea.822358
title: (Table S9) Isotopic composition of IODP Hole 301-U1301B

description: Sediment-covered basalt on the flanks of mid-ocean ridges constitutes most of Earth's oceanic crust, but the composition and metabolic function of its microbial ecosystem are largely unknown. By drilling into 3.5-million-year-old subseafloor basalt, we demonstrated the presence of methane- and sulfur-cycling microbes on the eastern flank of the Juan de Fuca Ridge. Depth horizons with functional genes indicative of methane-cycling and sulfate-reducing microorganisms are enriched in solid-phase sulfur and total organic carbon, host d13C- and d34S-isotopic values with a biological imprint, and show clear signs of microbial activity when incubated in the laboratory. Downcore changes in carbon and sulfur cycling show discrete geochemical intervals with chemoautotrophic d13C signatures locally attenuated by heterotrophic metabolism.
description: Supplement to: Lever, Mark A; Rouxel, Olivier J; Alt, Jeffrey C; Shimizu, Nobumichi; Ono, Shuhei; Coggon, Rosalind M; Shanks, Wayne C; Lapham, Laura L; Elvert, Marcus; Prieto-Mollar, Xavier; Hinrichs, Kai-Uwe; Inagaki, Fumio; Teske, Andreas P (2013): Evidence for Microbial Carbon and Sulfur Cycling in Deeply Buried Ridge Flank Basalt. Science, 339(6125), 1305-1308
DOI: 10.1594/pangaea.907373
title: The Post-SPICE (2015/2016 and 2016/2017) Winter Precipitation Intercomparison Data - Marshall 2015-2016
DOI: 10.1594/pangaea.907378
title: The Post-SPICE (2015/2016 and 2016/2017) Winter Precipitation Intercomparison Data - Weissfluhjoch 2016-2017