cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5523/bris.jh6hrovynjik2ix2h7m6fdea3
title: PanAfrican2020
title: Frame-by-frame Behaviour Annotations across 500 Videos of the PanAfrican2019 Video Dataset

description: This dataset contains approx. 180,000 XML annotation files assigning behaviours (9 overall behaviours), animal bounding boxes and species names to the content of every frame across the 500 chimpanzee and gorilla videos of the PanAfrican2019 dataset captured at 24 frames per seconds. Note that this dataset does not contain the video data itself, which is held by the PanAfrican Programme. Full details of the contents are provided in the readme.txt file. For associated code please check out https://github.com/fznsakib/great-ape-behaviour-detector. When using this dataset please cite the accompanying paper "Visual Recognition of Great Ape Behaviours in the Wild" available at https://arxiv.org/abs/2011.10759.
DOI: 10.7484/inspirehep.data.huh5.239f
title: The MadAnalysis5 implementation of the ATLAS in monojet+missing energy
DOI: 10.7484/inspirehep.data.sss4.298u
title: The MadAnalysis5 implementation of the ATLAS analysis ATLAS-EXOT-2016-25: an ATLAS mono-Higgs analysis
DOI: 10.6084/m9.figshare.14784795
title: Supplementary Material for: Long-Term Outcomes of Kidney Transplants from Older/Marginal Donors: A Cohort Study

description: <b><i>Introduction:</i></b> To safely expand the donor pool, we introduced a strategy of biopsy-guided selection and allocation to single or dual transplantation of kidneys from donors &gt;60 years old or with hypertension, diabetes, and/or proteinuria (older/marginal donors). Here, we evaluated the long-term performance of this approach in everyday clinical practice. <b><i>Methods:</i></b> In this single-center cohort study, we compared outcomes of 98 patients who received one or two biopsy-evaluated grafts from older/marginal donors (“recipients”) and 198 patients who received nonhistologically assessed single graft from ideal donors (“reference-recipients”) from October 2004 to December 2015 at the Bergamo Transplant Center (Italy). <b><i>Results:</i></b> Older/marginal donors and their recipients were 27.9 and 19.3 years older than ideal donors and their reference-recipients, respectively. KDPI/KDRI and donor serum creatinine were higher and cold ischemia time longer in the recipient group. During a median follow-up of 51.9 (interquartile range 23.1–88.6) months, 11.2% of recipients died, 7.1% lost their graft, and 16.3% had biopsy-proven acute rejection (BPAR) versus 3.5, 7.6, and 17.7%, respectively, of reference-recipients. Overall death-censored graft failure (rate ratio 0.78 [95% CI 0.33–2.08]), 5-year death-censored graft survival (94.3% [87.8–100.0] vs. 94.2% [90.5–98.0]), BPAR incidence (rate ratio 0.87 [0.49–1.62]), and yearly measured glomerular filtration rate decline (1.18 ± 3.27 vs. 0.68 ± 2.42 mL/min/1.73 m<sup>2</sup>, <i>p</i> = 0.37) were similar between recipients and reference-recipients, respectively. <b><i>Conclusions:</i></b> Biopsy-guided selection and allocation of kidneys from older/marginal donors can safely increase transplant activity in clinical practice without affecting long-term outcomes. This may help manage the growing gap between organ demand and supply without affecting long-term recipient and graft outcomes.
DOI: 10.6084/m9.figshare.14784795.v1
title: Supplementary Material for: Long-Term Outcomes of Kidney Transplants from Older/Marginal Donors: A Cohort Study

description: <b><i>Introduction:</i></b> To safely expand the donor pool, we introduced a strategy of biopsy-guided selection and allocation to single or dual transplantation of kidneys from donors &gt;60 years old or with hypertension, diabetes, and/or proteinuria (older/marginal donors). Here, we evaluated the long-term performance of this approach in everyday clinical practice. <b><i>Methods:</i></b> In this single-center cohort study, we compared outcomes of 98 patients who received one or two biopsy-evaluated grafts from older/marginal donors (“recipients”) and 198 patients who received nonhistologically assessed single graft from ideal donors (“reference-recipients”) from October 2004 to December 2015 at the Bergamo Transplant Center (Italy). <b><i>Results:</i></b> Older/marginal donors and their recipients were 27.9 and 19.3 years older than ideal donors and their reference-recipients, respectively. KDPI/KDRI and donor serum creatinine were higher and cold ischemia time longer in the recipient group. During a median follow-up of 51.9 (interquartile range 23.1–88.6) months, 11.2% of recipients died, 7.1% lost their graft, and 16.3% had biopsy-proven acute rejection (BPAR) versus 3.5, 7.6, and 17.7%, respectively, of reference-recipients. Overall death-censored graft failure (rate ratio 0.78 [95% CI 0.33–2.08]), 5-year death-censored graft survival (94.3% [87.8–100.0] vs. 94.2% [90.5–98.0]), BPAR incidence (rate ratio 0.87 [0.49–1.62]), and yearly measured glomerular filtration rate decline (1.18 ± 3.27 vs. 0.68 ± 2.42 mL/min/1.73 m<sup>2</sup>, <i>p</i> = 0.37) were similar between recipients and reference-recipients, respectively. <b><i>Conclusions:</i></b> Biopsy-guided selection and allocation of kidneys from older/marginal donors can safely increase transplant activity in clinical practice without affecting long-term outcomes. This may help manage the growing gap between organ demand and supply without affecting long-term recipient and graft outcomes.
DOI: 10.5517/ccdc.csd.cc27x1bk
title: CCDC 2082528: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, K. Guille|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27x1cl
title: CCDC 2082529: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, K. Guille|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27x1dm
title: CCDC 2082530: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, K. Guille|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27x1gp
title: CCDC 2082532: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, K. Guille|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27x1hq
title: CCDC 2082533: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, K. Guille|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27x1jr
title: CCDC 2082534: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, K. Guille|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27xmyr
title: CCDC 2083105: Experimental Crystal Structure Determination

description: Related Article: Arnold L. Rheingold|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27xx8c
title: CCDC 2083363: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, K. Guille|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27xx9d
title: CCDC 2083364: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, K. Guille|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27xxbf
title: CCDC 2083365: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, K. Guille|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27xxcg
title: CCDC 2083366: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, K. Guille|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27xxdh
title: CCDC 2083367: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, K. Guille|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27xxgk
title: CCDC 2083369: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, K. Guille|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27xxmq
title: CCDC 2083374: Experimental Crystal Structure Determination

description: Related Article: Arnold L. Rheingold|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27xxy1
title: CCDC 2083384: Experimental Crystal Structure Determination

description: Related Article: Arnold L. Rheingold|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27xy04
title: CCDC 2083386: Experimental Crystal Structure Determination

description: Related Article: Arnold L. Rheingold|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc2818yk
title: CCDC 2086608: Experimental Crystal Structure Determination

description: Related Article: W. Clegg|2021|CSD Communication|||
DOI: 10.6084/m9.figshare.14784537.v1
title: Treefile of 14 species and genes for phylogenetic analysis

description: ML tree of 15 published species within Cycadales and one outgroup Cupressus chengiana. List of genes for phylogenetic analysis.
DOI: 10.6084/m9.figshare.14784537.v2
title: Treefile of 14 species and genes for phylogenetic analysis

description: ML tree of 15 published species within Cycadales and one outgroup Cupressus chengiana. List of genes for phylogenetic analysis.
DOI: 10.6084/m9.figshare.14784537.v3
title: Treefile of 15species and genes for phylogenetic analysis

description: ML tree of 15 published species within Cycadales and one outgroup Cupressus chengiana. List of genes for phylogenetic analysis.
DOI: 10.6084/m9.figshare.14784816
title: Supplementary Material for: Incidence and Outcomes of Acute Kidney Injury in COVID-19: A Systematic Review

description: <b><i>Background and Objectives:</i></b> The recent worldwide pandemic of COVID-19 has been a serious, multidimensional problem that has left a detrimental worldwide impact on individuals of all ages and several organ systems. The typical manifestation of kidney involvement is acute kidney injury (AKI); however, there is a lack of consensus data regarding AKI epidemiology in COVID-19. This systematic literature review aims to bridge this knowledge gap. <b><i>Design, Setting, Participants, and Measurements:</i></b> MEDLINE and Cochrane library were systematically searched for the literature related to AKI in COVID-19 patients of all ages. MedRxIV was searched for relevant unpublished manuscripts. Two reviewers independently assessed the literature on the incidence of AKI and mortality, extracting the need for kidney replacement therapy (KRT). <b><i>Results:</i></b> Sixty studies (<i>n</i> = 43,871 patients) were included in this review. The pooled incidence of AKI among COVID-19 patients was 19.45% (95% confidence intervals [95% CI]: 14.63–24.77%), while the pooled incidence of AKI COVID-19 patients requiring KRT was 39.04% (16.38–64.57%). The pooled proportion of COVID+ patients was significantly lower at 8.83% (5.64% to 12/66%). The overall mortality of COVID-19 patients was calculated to be 17.71% (95% CI: 11.49–24.93%), while the mortality among patients with AKI was higher at 54.24% (95% CI: 44.70–63.63%). <b><i>Conclusion:</i></b> This comprehensive systematic review summarizes the available literature pertaining to AKI epidemiology in COVID-19 patients and highlights the incidence, associated mortality, and the need for KRT in this susceptible population.
DOI: 10.6084/m9.figshare.14784816.v1
title: Supplementary Material for: Incidence and Outcomes of Acute Kidney Injury in COVID-19: A Systematic Review

description: <b><i>Background and Objectives:</i></b> The recent worldwide pandemic of COVID-19 has been a serious, multidimensional problem that has left a detrimental worldwide impact on individuals of all ages and several organ systems. The typical manifestation of kidney involvement is acute kidney injury (AKI); however, there is a lack of consensus data regarding AKI epidemiology in COVID-19. This systematic literature review aims to bridge this knowledge gap. <b><i>Design, Setting, Participants, and Measurements:</i></b> MEDLINE and Cochrane library were systematically searched for the literature related to AKI in COVID-19 patients of all ages. MedRxIV was searched for relevant unpublished manuscripts. Two reviewers independently assessed the literature on the incidence of AKI and mortality, extracting the need for kidney replacement therapy (KRT). <b><i>Results:</i></b> Sixty studies (<i>n</i> = 43,871 patients) were included in this review. The pooled incidence of AKI among COVID-19 patients was 19.45% (95% confidence intervals [95% CI]: 14.63–24.77%), while the pooled incidence of AKI COVID-19 patients requiring KRT was 39.04% (16.38–64.57%). The pooled proportion of COVID+ patients was significantly lower at 8.83% (5.64% to 12/66%). The overall mortality of COVID-19 patients was calculated to be 17.71% (95% CI: 11.49–24.93%), while the mortality among patients with AKI was higher at 54.24% (95% CI: 44.70–63.63%). <b><i>Conclusion:</i></b> This comprehensive systematic review summarizes the available literature pertaining to AKI epidemiology in COVID-19 patients and highlights the incidence, associated mortality, and the need for KRT in this susceptible population.
DOI: 10.5522/04/14770731.v1
title: Reporting of Trial Monitoring in RCT Protocol Papers

description: This is data from a systematic review of the reporting of monitoring in protocol papers of randomised controlled trials (RCTs). The systematic review was conducted in April to June 2020 in seven journals that commonly publish clinical trial protocol papers, and in papers published by the BioMed Central publishing group. Data was extracted on each protocol paper published between 1st January and 31st May 2020. This dataset comprises information on the extent of the reporting of monitoring in each protocol paper.<br>We are submitting a paper on this systematic review for publication and will update with details and a url when available.<br>The dataset is provided as a .csv file, with columns separated by | [pipe/ vertical bar].
DOI: 10.6084/m9.figshare.14783085
title: saved_kernel

description: WDS kernel for desgin space
DOI: 10.6084/m9.figshare.14783085.v1
title: saved_kernel

description: WDS kernel for desgin space
DOI: 10.6084/m9.figshare.14784537
title: Treefile of 15 species and genes for phylogenetic analysis

description: ML tree of 15 published species within Cycadales and one outgroup Cupressus chengiana. List of genes for phylogenetic analysis.
DOI: 10.6084/m9.figshare.14784537.v5
title: Treefile of 15 species and genes for phylogenetic analysis

description: ML tree of 15 published species within Cycadales and one outgroup Cupressus chengiana. List of genes for phylogenetic analysis.
DOI: 10.6084/m9.figshare.14784537.v4
title: Treefile of 15 species and genes for phylogenetic analysis

description: ML tree of 15 published species within Cycadales and one outgroup Cupressus chengiana. List of genes for phylogenetic analysis.
DOI: 10.15161/oar.it/73850
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.7484/inspirehep.data.88nc.0fer.1
title: Madanalysis5 implementation of the ATLAS search for Dark matter in final states containing an energetic photon and large missing transverse momentum documented in arXiv:1704.03848
DOI: 10.7484/inspirehep.data.56dc.ppe2
title: MadAnalysis 5 implementation of ATLAS-SUSY-16-07 (arXiv:1712.02332)
DOI: 10.7484/inspirehep.data.uuif.89nc
title: MadAnalysis 5 implementation of the multijet + missing energy analysis of ATLAS with 13.3 fb-1 of data (ATLAS-CONF-2016-086)
DOI: 10.5281/zenodo.4925909
title: Increased functional connectivity of the intraparietal sulcus underlies the attenuation of numerosity estimations for self-generated words

description: Description of the dataset: Healthy participants imaging data (N=25). Data set includes MPRAGE, field map and 3 runs of task fMRI. Data is organized in BIDS format. Nifti zipped files are uploaded together with corresponding json and tsv files describing the sequence and task events. json files describing the study sample and details of the task are included. Abstract of the study: Previous studies have shown that self-generated stimuli in auditory, visual, and somatosensory domains are attenuated, producing decreased behavioral and neural responses compared to the same stimuli that are externally generated. Yet, whether such attenuation also occurs for higher-level cognitive functions beyond sensorimotor processing remains unknown. In this study, we assessed whether cognitive functions such as numerosity estimations are subject to attenuation in 56 healthy participants (32 women). We designed a task allowing the controlled comparison of numerosity estimations for self (active condition) and externally (passive condition) generated words. Our behavioral results showed a larger underestimation of self- compared to externally-generated words, suggesting that numerosity estimations for self-generated words are attenuated. Moreover, the linear relationship between the reported and actual number of words was stronger for self-generated words, although the ability to track errors about numerosity estimations was similar across conditions. Neuroimaging results revealed that numerosity underestimation involved increased functional connectivity between the right intraparietal sulcus and an extended network (bilateral supplementary motor area, left inferior parietal lobule and left superior temporal gyrus) when estimating the number of self vs. externally generated words. We interpret our results in light of two models of attenuation and discuss their perceptual versus cognitive origins.
DOI: 10.5281/zenodo.4925908
title: Increased functional connectivity of the intraparietal sulcus underlies the attenuation of numerosity estimations for self-generated words

description: Description of the dataset: Healthy participants imaging data (N=25). Data set includes MPRAGE, field map and 3 runs of task fMRI. Data is organized in BIDS format. Nifti zipped files are uploaded together with corresponding json and tsv files describing the sequence and task events. json files describing the study sample and details of the task are included. Abstract of the study: Previous studies have shown that self-generated stimuli in auditory, visual, and somatosensory domains are attenuated, producing decreased behavioral and neural responses compared to the same stimuli that are externally generated. Yet, whether such attenuation also occurs for higher-level cognitive functions beyond sensorimotor processing remains unknown. In this study, we assessed whether cognitive functions such as numerosity estimations are subject to attenuation in 56 healthy participants (32 women). We designed a task allowing the controlled comparison of numerosity estimations for self (active condition) and externally (passive condition) generated words. Our behavioral results showed a larger underestimation of self- compared to externally-generated words, suggesting that numerosity estimations for self-generated words are attenuated. Moreover, the linear relationship between the reported and actual number of words was stronger for self-generated words, although the ability to track errors about numerosity estimations was similar across conditions. Neuroimaging results revealed that numerosity underestimation involved increased functional connectivity between the right intraparietal sulcus and an extended network (bilateral supplementary motor area, left inferior parietal lobule and left superior temporal gyrus) when estimating the number of self vs. externally generated words. We interpret our results in light of two models of attenuation and discuss their perceptual versus cognitive origins.
DOI: 10.7484/inspirehep.data.gtf5.rn03
title: MadAnalysis5 implementation of the multijet analysis of ATLAS (arXiv:1605.03814)
DOI: 10.7484/inspirehep.data.45ef.23sb
title: MadAnalysis 5 recast of ATLAS-CONF-2019-040
DOI: 10.7484/inspirehep.data.d563.ll91
title: MadAnalysis5 implementation of the mono-Z analysis of CMS with 2.3 fb-1 of data (CMS-B2G-12-022)
DOI: 10.7484/inspirehep.data.jt56.ddc3.1
title: Madanalysis5 implementation of the CMS search for Dark matter with large missing transverse momentum and a Higgs boson decaying to a pair of photons documented in arXiv: 1703.05236
DOI: 10.7484/inspirehep.data.rk53.s39d
title: MadAnalysis5 implementation of the mono-Z analysis of CMS with 2.3 fb-1 of data (CMS-EXO-16-010)
DOI: 10.7484/inspirehep.data.ufu4.99e3
title: Madanalysis5 implementation of CMS-EXO-16-022
DOI: 10.7484/inspirehep.data.77yh.nbr3
title: MadAnalysis5 recast of CMS-SUS-16-033
DOI: 10.7484/inspirehep.data.he48.d9hd.1
title: MadAnalysis 5 implementation of the CMS search for supersymmetry in the multilepton channel with 35.9 fb−1 of 13 TeV LHC data (CMS-SUS-16-039)
DOI: 10.7484/inspirehep.data.jhc8.91ww
title: MadAnalysis5 code for the recast of the CMS analysis CMS-SUS-16-52
DOI: 10.7484/inspirehep.data.bbbc.6732
title: MadAnalysis5 implementation of the four-top analysis of CMS with 35.9 fb-1 of data (CMS-TOP-17-009)
DOI: 10.7484/inspirehep.data.mmm1.876z
title: Madanalysis5 implementation of CMS-SUS-17-001
DOI: 10.7484/inspirehep.data.gth3.rn26
title: Madanalysis5 implementation of the ATLAS monojet and missing transverse momentum search documented in arXiv: 1604.07773
DOI: 10.7484/inspirehep.data.grgz.fst3
title: MadAnalysis 5 implementation of CMS-B2G-12-012
DOI: 10.7484/inspirehep.data.bbzr.q6ea
title: MadAnalysis5 implementation of the CMS monophoton search (EXO-12-047)
DOI: 10.7484/inspirehep.data.jan2.unda
title: MadAnalysis5 implementation of the CMS monojet search (EXO-12-048)
DOI: 10.7484/inspirehep.data.uyt6.gfd9
title: Madanalysis 5 implementation of the ATLAS multi jet analysis documented in arXiv:1405.7875, JHEP 1409 (2014) 176
DOI: 10.7484/inspirehep.data.rt3v.9pjk
title: MadAnalysis 5 implementation of ATLAS-HIGG-2013-03
DOI: 10.7484/inspirehep.data.stls.samt
title: MadAnalysis5 implementation of ATLAS-SUSY-2013-04
DOI: 10.7484/inspirehep.data.z4ml.3w67.2
title: MadAnalysis 5 implementation of ATLAS-SUSY-2013-05
DOI: 10.7484/inspirehep.data.hlmr.t56w.2
title: MadAnalysis 5 implementation of ATLAS-SUSY-2013-11: di-leptons plus MET
DOI: 10.7484/inspirehep.data.rb33.m3cd
title: Madanalysis 5 implementation of the ATLAS monojet analysis documented in arXiv:1407.0608,   Phys. Rev. D. 90, 052008
DOI: 10.7484/inspirehep.data.rstt.7hvx
title: MadAnalysis 5 implementation of ATLAS-SUSY-2014-10: dilepton pair, jets, and MET
DOI: 10.7484/inspirehep.data.lr5t.2rr3
title: MadAnalysis 5 implementation of CMS-SUS-13-011: search for stops in the single lepton final state at 8 TeV
DOI: 10.7484/inspirehep.data.qgbp.k237
title: MadAnalysis 5 implementation of CMS-SUS-14-001 (monojet anaysis)
DOI: 10.7484/inspirehep.data.al3x.k2sd
title: MadAnalysis 5 implementation of CMS-SUS-14-001-TopTag