cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.14272/uodlicxqazwddj-uhfffaoysa-n.1
title: 1,1'-(((5'-(4-(2-methyl-1-((2,2,6,6-tetramethylpiperidin-1-yl)oxy)propyl)phenyl)-[1,1':3',1''-terphenyl]-4,4''-diyl)bis(2-methylpropane-1,1-diyl))bis(oxy))bis(2,2,6,6-tetramethylpiperidine)
title: InChI=1S/C63H93N3O3/c1-43(2)55(67-64-58(7,8)34-19-35-59(64,9)10)49-28-22-46(23-29-49)52-40-53(47-24-30-50(31-25-47)56(44(3)4)68-65-60(11,12)36-20-37-61(65,13)14)42-54(41-52)48-26-32-51(33-27-48)57(45(5)6)69-66-62(15,16)38-21-39-63(66,17)18/h22-33,40-45,55-57H,19-21,34-39H2,1-18H3

description: This dataset contains experimental data from a sample (InChI=1S/C63H93N3O3/c1-43(2)55(67-64-58(7,8)34-19-35-59(64,9)10)49-28-22-46(23-29-49)52-40-53(47-24-30-50(31-25-47)56(44(3)4)68-65-60(11,12)36-20-37-61(65,13)14)42-54(41-52)48-26-32-51(33-27-48)57(45(5)6)69-66-62(15,16)38-21-39-63(66,17)18/h22-33,40-45,55-57H,19-21,34-39H2,1-18H3). The datasets from the following experiments are available: 1H nuclear magnetic resonance spectroscopy (1H NMR) 13C nuclear magnetic resonance spectroscopy (13C NMR) mass spectrometry (MS) infrared absorption spectroscopy (IR)
DOI: 10.6084/m9.figshare.10023032
title: grid.414299.3

description: Network data for What does NZ research look like<br>
DOI: 10.6084/m9.figshare.10023089.v2
title: Mineral oil hydrocarbons in foods: is the data reliable?

description: The contamination of foods with mineral oil hydrocarbons (MOH) is a serious concern, requiring in most cases tedious mitigation measures that span across the whole food supply chain. A major issue today is the significant variability of the results generated by laboratories. This study was therefore designed to achieve a deeper insight into the analytical procedures used by commercial laboratories, identifying possible gaps and suggesting improvements that will enhance the reliability of the MOH data, an important prerequisite for risk assessment. In total six different food matrices, i.e. infant formula (IF), cocoa butter, cocoa powder, biscuits, fruit-based baby food containing biscuit and roast and ground coffee were subjected to comparative inter-laboratory studies, as well as one vegetable oil analysed within the frame of a professionally conducted proficiency test. The results indicate that on some matrices with possibly low amounts of MOH contamination, the current methodologies cannot reliably conclude whether or not a food sample is indeed contaminated with mineral oils (&lt;10 mg/kg food). Urgently needed are: (i) an aligned and fully validated sample preparation strategy tested on a range of different food matrices; (ii) a confirmation of positive flame ionisation detection (FID) results by confirmatory methods such as mass spectrometry – in line with the CEN Standard and the Joint Research Centre (JRC) Guidance Document, (iii) a more detailed root-cause analysis in the reports of laboratories through the use of mineral oil markers, and (iv) a fully validated official method for the concerned foods with a limit of application &lt;10 mg/kg food.
DOI: 10.6084/m9.figshare.10022990
title: grid.414055.1

description: Network data for What does NZ research look like<br>
DOI: 10.6084/m9.figshare.10023032.v1
title: grid.414299.3

description: Network data for What does NZ research look like<br>
DOI: 10.6084/m9.figshare.10023089.v1
title: Mineral oil hydrocarbons in foods: is the data reliable ?

description: The contamination of foods with mineral oil hydrocarbons (MOH) is a serious concern, requiring in most cases tedious mitigation measures that span across the whole food supply chain. A major issue today is the significant variability of the results generated by laboratories. This study was therefore designed to achieve a deeper insight into the analytical procedures used by commercial laboratories, identifying possible gaps and suggesting improvements that will enhance the reliability of the MOH data, an important prerequisite for risk assessment. In total six different food matrices, i.e. infant formula (IF), cocoa butter, cocoa powder, biscuits, fruit-based baby food containing biscuit and roast and ground coffee were subjected to comparative inter-laboratory studies, as well as one vegetable oil analysed within the frame of a professionally conducted proficiency test. The results indicate that on some matrices with possibly low amounts of MOH contamination, the current methodologies cannot reliably conclude whether or not a food sample is indeed contaminated with mineral oils (&lt;10 mg/kg food). Urgently needed are: (i) an aligned and fully validated sample preparation strategy tested on a range of different food matrices; (ii) a confirmation of positive flame ionisation detection (FID) results by confirmatory methods such as mass spectrometry – in line with the CEN Standard and the Joint Research Centre (JRC) Guidance Document, (iii) a more detailed root-cause analysis in the reports of laboratories through the use of mineral oil markers, and (iv) a fully validated official method for the concerned foods with a limit of application &lt;10 mg/kg food.
DOI: 10.25380/iastate.10022984
title: Effect of grain size and grain size distribution on slip dynamics: An experimental analysis

description: This data set contains experiments using a quasi-two-dimensional shear apparatus to shear assemblages of discs as an analog for fault gouge. Measurements of pulling force, displacement, and velocity show that the slip behavior of combinations of grains can vary based on the size of grains present and their relative abundance. Additionally, we include two videos of experiments that capture slip events, and images of the apparatus and the grains.<br><br><br>This data supports the paper:<br><br>Randolph-Flagg, J., Reber, J.E., 2020. Effect of grain size and grain size distribution on slip dynamics: An experimental analysis. Tectonophysics 774, 228288.<br>
DOI: 10.6084/m9.figshare.10022906
title: Amphipods in a Greek cave with sulphidic and non-sulphidic water: phylogenetically clustered and ecologically divergent

description: We characterized taxonomically, ecologically, and phylogenetically the amphipod community of Melissotrypa Cave (Central Greece), which comprises both freshwater and sulphidic lakes. We found four amphipod species: <i>Niphargus jovanovici</i>, <i>Niphargus lindbergi</i>, <i>Niphargus gammariformis</i> sp. nov. and an unknown species of <i>Bogidiella.</i> The three <i>Niphargus</i> species form a well-supported monophylum but differ in their ecology and morphology: <i>N. jovanovici</i> is a small and slender species inhabiting small freshwater voids, <i>N. lindbergi</i> is a large and stout species living in freshwater lakes, whereas <i>N. gammariformis</i> sp. nov. is a small and stout species found predominantly in a sulphidic lake. Available evidence suggests that diversification may have happened in a geographically restricted area and was driven by ecological differentiation. <i>Niphargus gammariformis</i> sp. nov. shows morphological convergences in diagnostic traits with two species hitherto classified into the genus <i>Pontoniphargus.</i> As molecular phylogenies show <i>Pontoniphargus</i> nested within <i>Niphargus</i>, we synonymize here <i>Pontoniphargus</i> with <i>Niphargus</i>. The species originally named <i>Pontoniphargus ruffoi</i> needed to be renamed into <i>Niphargus pontoruffoi.</i> http://www.zoobank.org/urn:lsid:zoobank.org:pub:4F5EED3B-DEB4-4402-BCE8-6AE2B65CCC3A
DOI: 10.6084/m9.figshare.10022852
title: GOALEvalPlosone (1).xls

description: <b>Abstract: </b>This pilot quasi-experimental trial tested a gender-responsive cognitive behavioral group intervention with 87 court-involved female adolescents (5 juvenile courts) who were at indicated risk for substance use disorder. Participants in the intervention (n = 57) received twice weekly group sessions for 10 weeks (20 sessions) focused on building emotional, thought and behavior regulation skills and generalizing these skills to relationally-based scenarios (GOAL: Girls Only Active Learning). Youth in the control condition (n = 30) received services as usual, which included non-gender-specific aggression management training, individual counseling and no services. The GOAL program was found to be acceptable to youth and parents and feasible to implement within a juvenile court setting using skilled facilitators. Compared to services as usual, the program significantly and meaningfully reduced self-reported delinquent behavior (β = 0.84, p &lt; 0.05) over 6 months, and exhibited trend level effects for reduced substance use (β = 0.40, p = 0.07). The program had mixed or no effects on family conflict and emotion regulation skills. These findings are discussed in light of treatment mechanisms and gender-responsive services.
DOI: 10.25380/iastate.10022984.v1
title: Effect of grain size and grain size distribution on slip dynamics: An experimental analysis

description: This data set contains experiments using a quasi-two-dimensional shear apparatus to shear assemblages of discs as an analog for fault gouge. Measurements of pulling force, displacement, and velocity show that the slip behavior of combinations of grains can vary based on the size of grains present and their relative abundance. Additionally, we include two videos of experiments that capture slip events, and images of the apparatus and the grains.<br><br><br>This data supports the paper:<br><br>Randolph-Flagg, J., Reber, J.E., 2020. Effect of grain size and grain size distribution on slip dynamics: An experimental analysis. Tectonophysics 774, 228288.<br>
DOI: 10.6084/m9.figshare.10022990.v1
title: grid.414055.1

description: Network data for What does NZ research look like<br>
DOI: 10.6084/m9.figshare.10022852.v1
title: GOALEvalPlosone (1).xls

description: <b>Abstract: </b>This pilot quasi-experimental trial tested a gender-responsive cognitive behavioral group intervention with 87 court-involved female adolescents (5 juvenile courts) who were at indicated risk for substance use disorder. Participants in the intervention (n = 57) received twice weekly group sessions for 10 weeks (20 sessions) focused on building emotional, thought and behavior regulation skills and generalizing these skills to relationally-based scenarios (GOAL: Girls Only Active Learning). Youth in the control condition (n = 30) received services as usual, which included non-gender-specific aggression management training, individual counseling and no services. The GOAL program was found to be acceptable to youth and parents and feasible to implement within a juvenile court setting using skilled facilitators. Compared to services as usual, the program significantly and meaningfully reduced self-reported delinquent behavior (β = 0.84, p &lt; 0.05) over 6 months, and exhibited trend level effects for reduced substance use (β = 0.40, p = 0.07). The program had mixed or no effects on family conflict and emotion regulation skills. These findings are discussed in light of treatment mechanisms and gender-responsive services.
DOI: 10.6084/m9.figshare.10022783
title: BEAST_MCC_from_TREEbase.nex

description: Heliconiine phylogeny from Kozak et al. Syst Biol. 2015 (TreeBASE #Tr77496)
DOI: 10.6084/m9.figshare.10022789
title: bacterial SSU rRNA sequences from shotgun data (phyloFlash)

description: Counts of taxa identified by phyloFlash from SSU rRNA sequences in metagenomes
DOI: 10.6084/m9.figshare.10022798
title: eukaryotic SSU rRNA sequences from shotgun data (phyloFlash)

description: Counts of taxa identified by phyloFlash from SSU rRNA sequences in metagenomes
DOI: 10.6084/m9.figshare.10022780
title: all_samples_phyloFlash_compare.matrix.txt

description: Distance matrix of 15 butterfly samples based on 16S rRNA reads in shotgun data (output of phyloFlash)
DOI: 10.6084/m9.figshare.10022783.v1
title: BEAST_MCC_from_TREEbase.nex

description: Heliconiine phylogeny from Kozak et al. Syst Biol. 2015 (TreeBASE #Tr77496)
DOI: 10.6084/m9.figshare.10022789.v1
title: bacterial SSU rRNA sequences from shotgun data (phyloFlash)

description: Counts of taxa identified by phyloFlash from SSU rRNA sequences in metagenomes
DOI: 10.6084/m9.figshare.10022798.v1
title: eukaryotic SSU rRNA sequences from shotgun data (phyloFlash)

description: Counts of taxa identified by phyloFlash from SSU rRNA sequences in metagenomes
DOI: 10.14272/ncrsqibttoqylb-uhfffaoysa-n/chmo0000630
title: infrared absorption spectroscopy (IR) ()
title: InChI=1S/C26H30O2/c1-17(2)25(27)23-13-9-21(10-14-23)19-5-7-20(8-6-19)22-11-15-24(16-12-22)26(28)18(3)4/h5-18,25-28H,1-4H3

description: dataset for infrared absorption spectroscopy (IR) IR (ATR, ṽ) = 3313 (m), 3026 (w), 2958 (m), 2924 (w), 2885 (m), 2871 (m), 1917 (vw), 1487 (m), 1466 (m), 1384 (m), 1366 (w), 1353 (w), 1330 (w), 1295 (w), 1256 (w), 1247 (w), 1204 (w), 1171 (w), 1129 (w), 1111 (w), 1096 (w), 1026 (vs), 1016 (vs), 1003 (vs), 948 (w), 933 (m), 844 (m), 813 (vs), 793 (vs), 697 (w), 677 (w), 670 (w), 646 (w), 564 (s), 541 (s), 518 (s), 487 (w), 450 (w), 409 (w) cm–1.
DOI: 10.6084/m9.figshare.10022774
title: Combo_HeliGuts_HCT_mapfile_R_final.txt

description: Metadata for the ESV table
DOI: 10.6084/m9.figshare.10022780.v1
title: all_samples_phyloFlash_compare.matrix.txt

description: Distance matrix of 15 butterfly samples based on 16S rRNA reads in shotgun data (output of phyloFlash)
DOI: 10.14272/ncrsqibttoqylb-uhfffaoysa-n/chmo0000595
title: 13C nuclear magnetic resonance spectroscopy (13C NMR) ()
title: InChI=1S/C26H30O2/c1-17(2)25(27)23-13-9-21(10-14-23)19-5-7-20(8-6-19)22-11-15-24(16-12-22)26(28)18(3)4/h5-18,25-28H,1-4H3

description: dataset for 13C nuclear magnetic resonance spectroscopy (13C NMR) 13C NMR (100 MHz, DMSO-d6 [39.5 ppm], ppm) δ = 144.4 (2C, Cq), 138.8 (2C, Cq), 137.8 (2C, Cq), 127.2 (4C, CarH), 127.0 (4C, CarH), 125.8 (4C, CarH), 77.2 (2C, COH), 34.9 (2C, CH(CH3)2), 19.1 (2C, CH3), 17.9 (2C, CH3).
DOI: 10.6084/m9.figshare.10022765
title: orbus_tip_labels.csv

description: Tip labels for Orbus sequences for phylogeny
DOI: 10.6084/m9.figshare.10022768
title: orbus_phylogeny_raw

description: Phylogeny of Orbus sequences with un-edited tip labels
DOI: 10.6084/m9.figshare.10022777
title: all_Unclass_Mito_ESVs_classifications.txt

description: Taxonomic classifications from top blast hits for all unclassified ESVs (see R code)
DOI: 10.14272/ncrsqibttoqylb-uhfffaoysa-n.1
title: 1,1'-([1,1':4',1''-terphenyl]-4,4''-diyl)bis(2-methylpropan-1-ol)
title: InChI=1S/C26H30O2/c1-17(2)25(27)23-13-9-21(10-14-23)19-5-7-20(8-6-19)22-11-15-24(16-12-22)26(28)18(3)4/h5-18,25-28H,1-4H3

description: This dataset contains experimental data from a sample (InChI=1S/C26H30O2/c1-17(2)25(27)23-13-9-21(10-14-23)19-5-7-20(8-6-19)22-11-15-24(16-12-22)26(28)18(3)4/h5-18,25-28H,1-4H3). The datasets from the following experiments are available: mass spectrometry (MS) infrared absorption spectroscopy (IR) 1H nuclear magnetic resonance spectroscopy (1H NMR) 13C nuclear magnetic resonance spectroscopy (13C NMR)
DOI: 10.6084/m9.figshare.10022774.v1
title: Combo_HeliGuts_HCT_mapfile_R_final.txt

description: Metadata for the ESV table
DOI: 10.6084/m9.figshare.10022810.v1
title: A Nodewise Regression Approach to Estimating Large Portfolios

description: This paper investigates the large sample properties of the variance, weights, and risk of high-dimensional portfolios where the inverse of the covariance matrix of excess asset returns is estimated using a technique called nodewise regression. Nodewise regression provides a direct estimator for the inverse covariance matrix using the Least Absolute Shrinkage and Selection Operator (Lasso) of Tibshirani (<b>1994</b>) to estimate the entries of a sparse precision matrix. We show that the variance, weights, and risk of the global minimum variance portfolios and the Markowitz mean-variance portfolios are consistently estimated with more assets than observations. We show, empirically, that the nodewise regression-based approach performs well in comparison to factor models and shrinkage methods.
DOI: 10.6084/m9.figshare.10022759
title: manual_refine_unclass_genus_esvs_blastn_top10.txt

description: Reclassified IDs for select ESVs that were not identified to genus
DOI: 10.6084/m9.figshare.10022762
title: seqtab_wTax_mctoolsr.txt

description: ESV table (formatted to work with the mctoolsr R package)Note there are some samples that were not included in the final dataset (and which are not in the metadata file)
DOI: 10.6084/m9.figshare.10022765.v1
title: orbus_tip_labels.csv

description: Tip labels for Orbus sequences for phylogeny
DOI: 10.6084/m9.figshare.10022768.v1
title: orbus_phylogeny_raw

description: Phylogeny of Orbus sequences with un-edited tip labels
DOI: 10.6084/m9.figshare.10022777.v1
title: all_Unclass_Mito_ESVs_classifications.txt

description: Taxonomic classifications from top blast hits for all unclassified ESVs (see R code)
DOI: 10.14272/ncrsqibttoqylb-uhfffaoysa-n/chmo0000470
title: mass spectrometry (MS) ()
title: InChI=1S/C26H30O2/c1-17(2)25(27)23-13-9-21(10-14-23)19-5-7-20(8-6-19)22-11-15-24(16-12-22)26(28)18(3)4/h5-18,25-28H,1-4H3

description: dataset for mass spectrometry (MS) FAB (3-NBA, m/z): 375 [M+ + H], 374 [M+], 358 [M+ – O], 357 [M+ – OH], 331 [M+ – C3H7], 138 (24), 137 (42), 136 (52), 133 (16), 107 (17), 91 (13), 89 (15).HRMS–FAB (m/z): [M+] calcd for C26H30O2, 374.2246; found, 374.2247.
DOI: 10.6084/m9.figshare.10022756
title: insertion_tree_ESVs.nwk

description: Fragment-insertion tree (ESVs into greengenes reference)
DOI: 10.14272/ncrsqibttoqylb-uhfffaoysa-n/chmo0000593
title: 1H nuclear magnetic resonance spectroscopy (1H NMR) ()
title: InChI=1S/C26H30O2/c1-17(2)25(27)23-13-9-21(10-14-23)19-5-7-20(8-6-19)22-11-15-24(16-12-22)26(28)18(3)4/h5-18,25-28H,1-4H3

description: dataset for 1H nuclear magnetic resonance spectroscopy (1H NMR) 1H NMR (400 MHz, DMSO-d6 [2.50 ppm], ppm) δ = 7.75 (s, 4H, CarH), 7.67 (d, J = 8.3 Hz, 4H, Car.H), 7.39 (d, J = 8.3 Hz, 4H, CarH), 5.14 (d, J = 4.4 Hz, 2H, OH), 4.33–4.27 (m, 2H, CHOH), 1.90–1.79 (m, 2H, CH(CH3)2), 0.89 (d, J = 6.8 Hz, 6H, CH3), 0.79 (d, J = 6.8 Hz, 6H, CH3).
DOI: 10.6084/m9.figshare.10022747
title: A financial incentive program to improve appointment attendance at a safety-net hospital-based primary care hepatitis C treatment program

description: <b>Introduction:</b> Hepatitis C (HCV) infection is a significant health threat, with increasing incidence rates in the setting of the opioid crisis. Many patients miss appointments and cannot initiate treatment. We implemented financial incentives to improve appointment attendance in a primary care-based HCV treatment setting. <b>Methods:</b> We conducted a systems-level financial incentives intervention at the Adult Primary Care HCV Treatment Program at Boston Medical Center which provides care to many patients with substance use disorders. From April 1 to June 30, 2017, we provided a $15 gift card to patients who attended appointments with an HCV treatment provider. We evaluated the effectiveness of the incentives by 1) conducting a monthly interrupted time series analysis to assess trends in attendance January 2016 - September 2017; and 2) comparing the proportion of attended appointments during the intervention to a historical comparison group in the previous year, April 1 to June 30, 2016. <b>Results:</b> 327 visits were scheduled over the study period; 198 during the intervention and 129 during the control period. Of patient visits in the intervention group, 72.7% were attended relative to 61.2% of comparison group visits (p=0.03). Appointments in the intervention group were more likely to be attended (adjusted odds ratio 1.94, 95% confidence interval 1.16-3.24). Interrupted time series analysis showed that<b> </b>the intervention was associated with an average increase of 15.4 attended visits per 100 appointments scheduled, compared to the period prior to the intervention (p=0.01). <b>Conclusions:</b> Implementation of a financial incentive program was associated with improved appointment attendance at a safety-net hospital-based primary care HCV treatment program. A randomized trial to establish efficacy and broader implementation potential is warranted.<b></b><br>
DOI: 10.6084/m9.figshare.10022759.v1
title: manual_refine_unclass_genus_esvs_blastn_top10.txt

description: Reclassified IDs for select ESVs that were not identified to genus
DOI: 10.6084/m9.figshare.10022657
title: Images, TPS and contour files

description: Dataset for the manuscript "Testing repeatability, measurement error and species differentiation when using geometric morphometrics on complex shapes: a case study of Patagonian lizards of the genus Liolaemus (Squamata: Liolaemini)" Vrdoljak et al.TPS files with "shap" in the name corresponding to among-operators designTPS files with "pot" in the name corresponding to related-species designTPS files with "tax" in the name corresponding to across-taxa design. moscas= flies, hojas = leaves and lagar = lizards.rar documents are contours for different designs.rar documents beginning with "images" are the images for different designs<br>See Appendix 1 for information about specimens.<br>
DOI: 10.6084/m9.figshare.10022756.v1
title: insertion_tree_ESVs.nwk

description: Fragment-insertion tree (ESVs into greengenes reference)
DOI: 10.6084/m9.figshare.10022762.v1
title: seqtab_wTax_mctoolsr.txt

description: ESV table (formatted to work with the mctoolsr R package)Note there are some samples that were not included in the final dataset (and which are not in the metadata file)
DOI: 10.6084/m9.figshare.10022654
title: Nicholson_etal_2019_Wild_bee_occurrence_traits

description: These data are species lists for each study setting (i.e. MI blueberry, MI Cherry, Oregon, blueberry, and California watermelon). The data present two main pieces of information: (1) species occurrence and abundance & (2) species functional traits.<br><br><br>The occurrence of each species is denoted by a '1' for each site type ('EE" = enhanced edge, 'CE' = control edge, 'EC' = enhanced crop, 'CC' = control crop). The column 'Abund' gives to total nujmber of specimens collected across these site types for both years (2015 & 2016).<br>The functional traits are lecty, sociality, nest location and intertegular distance (ITD, a body size metric). The first 3 traits are categorical, their categories are:<br><b>Lecty</b> - polylectic ('pol') or oligolectic ('oli')<b>Sociality</b> - solitary ('sol'), social ('soc'), or faculatively social ('fac')<b>Nest location</b> - soil, stem, cavity, wood<b><br></b><b>ITD</b> is given in mm.<br>The categorization of these traits follows other published resources (see Methods and Appendices in Nicholson et al 2019 <i>Ecology Letters</i>). For some species traits have not been published and these are given a 'NA' value.<br>