cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18375218
title: Multi-perspective Traffic Video Recording

description: Abstract: 

This dataset was produced as part of the NANCY project (https://nancy-project.eu/), with the aim of using it in the fields of communication and computer vision. Within the dataset are contained three different scenarios, each of which has three videos. All three videos were captured by different devices; a vehicle-mounted unit, a roadside unit (RSU), and a drone. These devices were placed at different locations, with different angles and heights but all facing the same area of interest, providing multiple different views of the desired location. The present architecture offers the integration of complementary data, offering a richer and more comprehensive understanding of the observed area. Additionally, the dataset was tailored made for use in semantic communications (SemCom). By using SemCom the above dataset provides a more precise and enriched understanding of the area of interest. This is achieved by transmitting only meaningful and context-aware information rather than raw data, significantly reducing data traffic while at the same time enhancing the quality of insights.The NANCY project has received funding from the Smart Networks and Services Joint Undertaking (SNS JU) under the European Union's Horizon Europe research and innovation programme under Grant Agreement No 101096456.

Instructions:

The present dataset, through the multiple number of devices that it contains, has the ability to offer a wide range of applications of its data. By applying the global perspective offered by the vehicle unit, RSU, and drone data, the dataset offers innovative solutions in areas such as object detection, activity recognition, environmental monitoring, and artificial intelligence (AI). Moreover, it is an ideal solution for the development and demonstration of SemCom's advantages, in which context-aware data transmission and analysis can enhance efficiency and precision. In conclusion, the rich, multi-angle observations make this dataset a valuable resource for tackling complex challenges in modern computer vision, AI, and communication systems.
DOI: 10.5061/dryad.r21qp
title: Data from: Technology networks: the autocatalytic origins of innovation

description: We analyse the autocatalytic structure of technological networks and
 evaluate its significance for the dynamics of innovation patenting. To
 this aim, we define a directed network of technological fields based on
 the International Patents Classification, in which a source node is
 connected to a receiver node via a link if patenting activity in the
 source field anticipates patents in the receiver field in the same region
 more frequently than we would expect at random. We show that the evolution
 of the technology network is compatible with the presence of a growing
 autocatalytic structure, i.e. a portion of the network in which
 technological fields mutually benefit from being connected to one another.
 We further show that technological fields in the core of the autocatalytic
 set display greater fitness, i.e. they tend to appear in a greater number
 of patents, thus suggesting the presence of positive spillovers as well as
 positive reinforcement. Finally, we observe that core shifts take place
 whereby different groups of technology fields alternate within the
 autocatalytic structure; this points to the importance of recombinant
 innovation taking place between close as well as distant fields of the
 hierarchical classification of technological fields.
description: code_rsos_gitCodesThe archive contains the data needed to reproduce the results presented in the paper. This archive does not contain codes, which, however, can be downloaded from github (see 'code/download_istructions.txt' inside the archive for details).CodesThe files contain all the necessary code to reproduce the results in the paper. We suggest placing them in the "code" folder contained in the data archive before running them.
DOI: 10.5281/zenodo.18375217
title: Multi-perspective Traffic Video Recording

description: Abstract: 

This dataset was produced as part of the NANCY project (https://nancy-project.eu/), with the aim of using it in the fields of communication and computer vision. Within the dataset are contained three different scenarios, each of which has three videos. All three videos were captured by different devices; a vehicle-mounted unit, a roadside unit (RSU), and a drone. These devices were placed at different locations, with different angles and heights but all facing the same area of interest, providing multiple different views of the desired location. The present architecture offers the integration of complementary data, offering a richer and more comprehensive understanding of the observed area. Additionally, the dataset was tailored made for use in semantic communications (SemCom). By using SemCom the above dataset provides a more precise and enriched understanding of the area of interest. This is achieved by transmitting only meaningful and context-aware information rather than raw data, significantly reducing data traffic while at the same time enhancing the quality of insights.The NANCY project has received funding from the Smart Networks and Services Joint Undertaking (SNS JU) under the European Union's Horizon Europe research and innovation programme under Grant Agreement No 101096456.

Instructions:

The present dataset, through the multiple number of devices that it contains, has the ability to offer a wide range of applications of its data. By applying the global perspective offered by the vehicle unit, RSU, and drone data, the dataset offers innovative solutions in areas such as object detection, activity recognition, environmental monitoring, and artificial intelligence (AI). Moreover, it is an ideal solution for the development and demonstration of SemCom's advantages, in which context-aware data transmission and analysis can enhance efficiency and precision. In conclusion, the rich, multi-angle observations make this dataset a valuable resource for tackling complex challenges in modern computer vision, AI, and communication systems.
DOI: 10.5061/dryad.53975
title: Data from: Is the switch to an ectomycorrhizal state an evolutionary key innovation in mushroom-forming fungi? a case study in the tricholomatineae (agaricales)

description: Although fungi are one of the most diverse groups of organisms, little is
 known about the processes that shape their high taxonomic diversity. This
 study focuses on evolution of ectomycorrhizal (ECM) mushroom-forming
 fungi, symbiotic associates of many trees and shrubs, in the suborder
 Tricholomatineae of the Agaricales. We used the BiSSE model and BAMM to
 test the hypothesis that the ECM habit represents an evolutionary key
 innovation that allowed the colonization of new niches followed by an
 increase in diversification rate. Ancestral state reconstruction supports
 the ancestor of the Tricholomatineae as non-ECM. We detected two
 diversification rate increases in the genus Tricholoma and the
 Rhodopolioid clade of the genus Entoloma. However, no increases in
 diversification were detected in the four other ECM clades of
 Tricholomatineae. We suggest that diversification of Tricholoma was not
 only due to the evolution of the ECM lifestyle, but to the expansion and
 dominance of its main hosts and ability to associate with a variety of
 hosts. Diversification in the Rhodopolioid clade could be due to the
 unique combination of spore morphology and ECM habit. The spore morphology
 may represent an exaptation that aided spore dispersal and colonization.
 This is the first study to investigate rate shifts across a phylogeny that
 contains both non-ECM and ECM lineages.
description: DryadIn the folder “Dryad”
 you will find 4 subfolders: 1) “Alignment”, which includes the alignment
 used to reconstruct the molecular phylogeny, and the Partition Finder
 analyses; 2) “ASR”, which includes one hundred random trees obtained from
 the posterior distribution of the BEAST analyses, and the files used for
 the ancestral state reconstruction; 3) “BAMM v2.5”, which includes the raw
 results from the BAMM analysis and a subfolder "topological
 uncertainty BAMM v.2.5" which includes 100 random trees and their
 respective BAMM results; 4) “BiSSE”, which includes the tree, character
 state table and R script used to run the BiSSE analyses, and a subfolder
 “topological uncertainty BiSSE” with 100 random trees and their respective
 R scripts.
DOI: 10.5061/dryad.98pt3
title: Data from: Gene co-expression modules underlying polymorphic and monomorphic zooids in the colonial hydrozoan, Hydractinia symbiolongicarpus

description: Advances in sequencing technology have forced a quantitative revolution in
 Evolutionary Biology. One important feature of this renaissance is that
 comprehensive genomic resources can be obtained quickly for almost any
 taxon, thus speeding the development of new model organisms. Here, we
 analyze 20 RNA-seq libraries from morphologically, sexually, and
 genetically distinct polyp types from the gonochoristic colonial
 hydrozoan, Hydractinia symbiolongicarpus (Cnidaria). Analyses of these
 data using weighted gene co-expression networks highlight deeply conserved
 genetic elements of animal spermatogenesis and demonstrate the utility of
 these methods in identifying modules of genes that correlate with
 different zooid types across various statistical contrasts. RNA-seq data
 and analytical scripts described here are deposited in publicly available
 databases.
description: Hydractinia_TrinityFasta file containing transcriptome assembly described in Plachetzki et al, 2014Hydrac_3500the reduced assembly containing only contigs with greater than 10 counts per libraryblackFasta file containing transcript sequences from black moduleblueFasta file containing transcript sequences from blue modulebrownFasta file containing transcript sequences from brown modulegreenFasta file containing transcript sequences from green modulemagentaFasta file containing transcript sequences from magenta modulepinkFasta file containing transcript sequences from pink modulepurpleFasta file containing transcript sequences from purple moduleredFasta file containing transcript sequences from red moduleturquoiseFasta file containing transcript sequences from turquoise moduleyellowFasta file containing transcript sequences from yellow moduleREADMEgA_gO_matrixtotal un-normalized counts matrix derived from bowtie and RSEMgA_gO.matrix
DOI: 10.5061/dryad.46fb1
title: Data from: Region-wide and ecotype-specific differences in demographic histories of threespine stickleback populations, estimated from whole genome sequences

description: We analysed 81 whole genome sequences of threespine sticklebacks from
 Pacific North America, Greenland and Northern Europe, representing 16
 populations. Principal component analysis of nuclear SNPs grouped
 populations according to geographical location, with Pacific populations
 being more divergent from each other relative to European and Greenlandic
 populations. Analysis of mitogenome sequences showed Northern European
 populations to represent a single phylogeographical lineage, whereas
 Greenlandic and particularly Pacific populations showed admixture between
 lineages. We estimated demographic history using a genomewide coalescence
 with recombination approach. The Pacific populations showed gradual
 population expansion starting &gt;100 Kya, possibly reflecting
 persistence in cryptic refuges near the present distributional range,
 although we do not rule out possible influence of ancient admixture. Sharp
 population declines ca. 14–15 Kya were suggested to reflect founding of
 freshwater populations by marine ancestors. In Greenland and Northern
 Europe, demographic expansion started ca. 20–25 Kya coinciding with the
 end of the Last Glacial Maximum. In both regions, marine and freshwater
 populations started to show different demographic trajectories ca. 8–9
 Kya, suggesting that this was the time of recolonization. In Northern
 Europe, this estimate was surprisingly late, but found support in
 subfossil evidence for presence of several freshwater fish species but not
 sticklebacks 12 Kya. The results demonstrate distinctly different
 demographic histories across geographical regions with potential
 consequences for adaptive processes. They also provide empirical support
 for previous assumptions about freshwater populations being founded
 independently from large, coherent marine populations, a key element in
 the Transporter Hypothesis invoked to explain the widespread occurrence of
 parallel evolution across freshwater stickleback populations.
description: SNPs_subsetA VCF file containing a random subset (1%) of all SNPs discovered in this study. This file was used for conducting PCA and calculating nucleotide diversity.mtDNA_alignmentsThe zip file contains the three mtDNA alignments used in this study. "mitogenomes.fas" is the alignment of the mitogenomes of the 81 individuals included in this study together with an outgroup. Control Region was removed from the alignment. Based on it, two other alignments, "alignment_with_1994-cytb.fas" and "alignment_with_2008-cytb.fas", were created by incorporating the data from Orti et al. (1994) and Makinen & Merila (2008), respectively.
DOI: 10.5061/dryad.b23dd4r
title: Data from: Dairy products viscosity estimated by laser speckle correlation

description: Dairy products exhibit several physical properties that are crucial to
 define whether we like the food or not: firmness, creaminess, thickness,
 or lightness. Viscosity changes the flow properties of food and influences
 the appearance and the consistency of a product; this control variable is
 important in most production stages—manufacture, processing, and storage.
 Viscosity of heterogeneous products at a given temperature depends on its
 composition and physical state of its substances. Although rheology
 provides a method to access the product viscosity, it lacks non-contact
 full-field monitoring. We apply a simple correlation analysis of laser
 speckle images to evaluate viscosity properties of dairy products. Our
 approach ensures robust measurements with high degree of detectability.
description: Diary viscosity using
 LSCI, matlab dataMatlab data with
 frame-to-frame and g2 intensity correlations calculated for dairy
 products.PLOS_DiaryLSCI.mat
DOI: 10.5061/dryad.sd28r
title: Data from: A genomewide catalogue of single nucleotide polymorphisms in white-beaked and Atlantic white-sided dolphins

description: The field of population genetics is rapidly moving into population
 genomics as the quantity of data generated by high-throughput sequencing
 platforms increases. In this study, we used restriction-site-associated
 DNA sequencing (RADSeq) to recover genomewide genotypes from 70
 white-beaked (Lagenorhynchus albirostris) and 43 Atlantic white-sided
 dolphins (L. acutus) gathered throughout their north-east Atlantic
 distribution range. Both species are at a high risk of being negatively
 affected by climate change. Here, we provide a resource of 38 240 RAD-tags
 and 52 981 nuclear SNPs shared between both species. We have estimated
 overall higher levels of nucleotide diversity in white-sided (π = 0.0492 ±
 0.0006%) than in white-beaked dolphins (π = 0.0300 ± 0.0004%). White-sided
 dolphins sampled in the Faroe Islands, belonging to two pods (N = 7 and N
 = 11), showed similar levels of diversity (π = 0.0317 ± 0.0007% and 0.0267
 ± 0.0006%, respectively) compared to unrelated individuals of the same
 species sampled elsewhere (e.g. π = 0.0285 ± 0.0007% for 11 Scottish
 individuals). No evidence of higher levels of kinship within pods can be
 derived from our analyses. When identifying the most likely number of
 genetic clusters among our sample set, we obtained an estimate of two to
 four clusters, corresponding to both species and possibly, two further
 clusters within each species. A higher diversity and lower population
 structuring was encountered in white-sided dolphins from the north-east
 Atlantic, in line with their preference for pelagic waters, as opposed to
 white-beaked dolphins that have a more patchy distribution, mainly across
 continental shelves.
description: structure file
 Genome-wide SNP catalogue in Lagenorhynchus sppTab Separated Values
 File in "Structure" format. This file was used to run the
 software "Admixture". Missing data=0, A=1, C=2, G=3,
 T=4.vcf file Genome-wide SNP
 catalogue in Lagenorhynchus sppVariant Call Format
 (vcf) file containing all the SNPs found within the 113 sampled dolphins
 (N=40 Lagenorhynchus acutus, white-sided dolphin, and N=73 L.albirostris,
 white-beaked dolphin).
DOI: 10.5061/dryad.pv8s1
title: Data from: Local neighbourhood and regional climatic contexts interact to explain tree performance

description: Tree neighbourhood modelling has significantly contributed to our
 understanding of the mechanisms structuring communities. Investigations
 into the impact of neighbouring crowding on tree performance have
 generally been conducted at local scales, missing important regional-scale
 context such as the suitability of the climate for each species.
 Favourable climates may enhance tree performance, but this may come at the
 cost of increased neighbourhood crowding and competition negatively
 impacting survival and growth. Through the synthesis of continental-scale
 forest inventory and trait datasets from the northeast USA and Puerto Rico
 we present an analytical approach that elucidates the important
 interactions between local competitive and regional climatic contexts. Our
 results show strong asymmetries in competitive interactions and
 significant niche differences that are dependent on habitat suitability.
 The strong interaction between local neighbourhood and regional climate
 highlights the need for models that consider the interaction between these
 two processes that have been previously ignored.
description: Tree demographic
 Northeast USTree survival and growth
 data for the Northeast of the USFIA_NE_final.csvFunctional traits Northeast USPlant functional trait data for the Northeast of the USFunctional_traits_US_st.csvClimate in the Northeast of the USIncludes climate (suitability) and tree demography data from the Northeast of the USsuitability_plot_NE.csvTree demography in Puerto RicoTree survival and growth data from Puerto RicoFIA_PR_final.csvFunctional traits Puerto RicoPlant functional traits from Puerto RicoFunctional_traits_Luquillo.csvClimate in Puerto RicoClimate (suitability) and tree demographic data from Puerto Ricosuitability_plot_PR.csv
DOI: 10.5061/dryad.17bn1
title: Data from: Genome reannotation of the lizard Anolis carolinensis based on 14 adult and embryonic deep transcriptomes

description: Background: The green anole lizard, Anolis carolinensis, is a key species
 for both laboratory and field-based studies of evolutionary genetics,
 development, neurobiology, physiology, behavior, and ecology. As the first
 non-avian reptilian genome sequenced, A. carolinesis is also a prime
 reptilian model for comparison with other vertebrate genomes. The public
 databases of Ensembl and NCBI have provided a first generation gene
 annotation of the anole genome that relies primarily on sequence
 conservation with related species. A second generation annotation based on
 tissue-specific transcriptomes would provide a valuable resource for
 molecular studies. Results: Here we provide an annotation of the A.
 carolinensis genome based on de novo assembly of deep transcriptomes of 14
 adult and embryonic tissues. This revised annotation describes 59,373
 transcripts, compared to 16,533 and 18,939 currently for Ensembl and NCBI,
 and 22,962 predicted protein-coding genes. A key improvement in this
 revised annotation is coverage of untranslated region (UTR) sequences,
 with 79% and 59% of transcripts containing 5' and 3' UTRs,
 respectively. Gaps in genome sequence from the current A. carolinensis
 build (Anocar2.0) are highlighted by our identification of 16,542 unmapped
 transcripts, representing 6,695 orthologues, with less than 70% genomic
 coverage. Conclusions: Incorporation of tissue-specific transcriptome
 sequence into the A. carolinensis genome annotation has markedly improved
 its utility for comparative and functional studies. Increased UTR coverage
 allows for more accurate predicted protein sequence and regulatory
 analysis. This revised annotation also provides an atlas of gene
 expression specific to adult and embryonic tissues.
description: ASU_Acar_v2.1.prot.fa.gz
 - A fasta file of the protein sequences for each transcript in
 ASU_Acar_v2.1ASU_Acar_v2.1.prot.fa.gzASU_Acar_v2.1.gtf - The gtf annotation file.ASU_Acar_v2.1.gtf.gzASU_Acar_v2.1.gff3 -- The gff3 annotation file.ASU_Acar_v2.1.gff3.gzASU_Acar_v2.1.exon.fa -- A fasta file of each exon of each of the transcripts in ASU_Acar_v2.1Exons are duplicated if they are shared between transcripts.ASU_Acar_v2.1.exon.fa.gzASU_Acar_v2.1.cDNA.fa.gz -- A fasta file of the cDNA sequences for each gene transcript in ASU_Acar_v2.1ASU_Acar_v2.1.cDNA.fa.gz
DOI: 10.15468/dl.y92mg9
title: Occurrence Download

description: A dataset containing 52210 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is one of (China, Japan, Korea (Democratic People’s Republic of), Korea, Republic of, Pakistan, India, Nepal, Bhutan, Bangladesh, Sri Lanka, Myanmar, Thailand, Lao People’s Democratic Republic, Cambodia, Viet Nam, Chinese Taipei, Philippines, Malaysia, Indonesia, Papua New Guinea, Solomon Islands, Australia, Timor-Leste, Afghanistan)",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Laggera alata, Laportea bulbifera, Lejeunea flava, Lepisorus eilophyllus, Leptochilus hemionitideus, Leptodesmia microphylla, Leucas ciliata, Leucas indica, Leucobryum juniperoideum, Leucosyke puya, Lilium wallichianum, Lindera pulcherrima, Litsea salicifolia, Lobularia maritima, Lophopetalum wightianum, Luzula campestris, Lycianthes laevis, Lyonia ovalifolia, Lysimachia deltoidea, Macaranga indica, Machilus glaucescens, Macromitrium cavaleriei, Macromitrium densum, Macromitrium moorcroftii, Macromitrium nepalense, Macrothamnium macrocarpum, Macrothelypteris ornata, Maesa indica, Mahonia napaulensis, Mallotus tetracoccus, Marchantia paleacea, Meliosma simplicifolia, Meteoriopsis reclinata, Meteoriopsis squarrosa, Meteorium buchananii, Meteorium polytrichum, Mezoneuron cucullatum, Microlepia platyphylla, Micromeria biflora, Microsorum cuspidatum, Munronia pinnata, Murdannia vaginata, Nechamandra alternifolia, Neodicladiella pendula, Neolitsea cuipala, Neolitsea foliosa, Neolitsea pallens, Neonauclea purpurea, Nidorella triloba, Oberonia mucronata, Ochna pumila, Octoblepharum albidum, Ophiopogon intermedius, Ophiorrhiza mungos, Ophiorrhiza rugosa, Oreocnide integrifolia, Osmolindsaea odorata, Osyris quadripartita)"
 ]
}

 The dataset includes 52210 records from 390 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000384-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.