cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20132258.v1
title: Supplementary Material for: The Effectiveness of 6 versus 12 Months of Dialectical Behavior Therapy for Borderline Personality Disorder: A Noninferiority Randomized Clinical Trial

description: <b><i>Introduction:</i></b> Evidence-based psychotherapies for borderline personality disorder (BPD) are lengthy, posing a barrier to their access. Brief psychotherapy may achieve comparable outcomes to long-term psychotherapy for BPD. Evidence is needed regarding the comparative effectiveness of short- versus long-term psychotherapy for BPD. <b><i>Objective:</i></b> The aim was to determine if 6 months of Dialectical Behavior Therapy (DBT) is noninferior to 12 months of DBT in terms of clinical effectiveness. <b><i>Methods:</i></b> This two-arm, single-blinded, randomized controlled noninferiority trial with suicidal or self-harming patients with BPD was conducted at two sites in Canada. Participants (<i>N</i> = 240, <i>M</i> (SD)<sub>age</sub> = 28.27 (8.62), 79% females) were randomized to receive either 6 (DBT-6) or 12 months (DBT-12) of comprehensive DBT. Masked assessors obtained measures of clinical effectiveness at baseline and every 3 months, ending at month 24. DBT-6 and DBT-12 were outpatient treatments consisting of weekly individual therapy sessions, weekly DBT skills training group sessions, telephone consultation as needed, and weekly therapist consultation team meetings. <b><i>Results:</i></b> The noninferiority hypothesis was supported for the primary outcome, total self-harm (6 months: margin = −1.94, <i>M</i><sub>diff</sub> [95% CI] = 0.16 [−0.14, 0.46]; 12 months: margin = −1.47, <i>M</i><sub>diff</sub> [95% CI] = 0.04 [−0.17, 0.23]; 24 months: margin = −1.25, <i>M</i><sub>diff</sub> [95% CI] = 0.12 [−0.02, 0.36]). Results also supported noninferiority of DBT-6 for general psychopathology and coping skills at 24 months. Furthermore, DBT-6 participants showed more rapid reductions in BPD symptoms and general psychopathology. There were no between-group differences in dropout rates. <b><i>Conclusions:</i></b> The noninferiority of a briefer yet comprehensive treatment for BPD has potential to reduce barriers to treatment access.
DOI: 10.6084/m9.figshare.21151918.v1
title: Gene database of Methylotuvimicrobium alcaliphilum 20Z

description: This work presents the gene database of <em>Methylotuvimicrobium alcaliphilum</em> 20Z. Original genome data came from GenBank, which was parsed by an in-house MATLAB genome analysis software to yield a catalogue of gene name, gene function, and gene sequence across all genes in the organism’s genome. Overall, this gene database should be useful in initiating studies looking into the metabolism of C1 substrates such as methane, and their potential use in next-generation biotechnology.
DOI: 10.6084/m9.figshare.26488219.v1
title: The dataset and R code for the paper "Soil respiration response to decade-long warming modulated by soil moisture in a boreal forest" in Nature Geoscience, 2024

description: Data and R code for soil respiration under experimental warming in boreal forests from the project named "The Boreal Forest Warming at an Ecotone in Danger (B4WarmED)".
DOI: 10.6084/m9.figshare.27221571.v1
title: Dataset for "The impact of sugar taxes on agricultural trade and health-related outcomes: a structural gravity model analysis"

description: This repository contains datasets used in the study "The impact of sugar taxes on agricultural trade and health-related outcomes: a structural gravity model analysis." It includes both a Stata .dta file and CSV files to facilitate result replication.Key Variables (full details in data_ssbtax_desc.csv):k: Industry IDi: Exporter IDj: Importer IDt: YearX: Trade flowsNDI: Non-discriminatory tax policyINTL: International border dummySSBTAX: INTL x NDIGATTWTO: Both in GATT/WTOPTA: Both in PTASSBTAXadv: SSBTAX x (ad valorem = 1)SSBTAXspe: SSBTAX x (specific = 1)SSBTAXhlth0: SSBTAX x (healthobj = 0)SSBTAXhlth1: SSBTAX x (healthobj = 1)
DOI: 10.6084/m9.figshare.5555731.v1
title: Particle Clearance R Script from Microencapsulated diets to improve bivalve shellfish aquaculture

description: R script for particle clearance figure creation and statistical analyses
DOI: 10.6084/m9.figshare.12867038.v5
title: Data for Evidence synthesis: Funding research for small-scale farmers in water scarce regions to achieve SDG 2.3

description: This dataset was created for the Ceres2030 Team 6, who conducted a semi-automatic systematic review of over 18,000 articles. The goal was to identify solutions for small farms to adapt to climate change - we focused on water scarce environments. This analysis is under review at the academic journal Nature Sustainability. A link to the article will be provided once published. The manuscript's current citation is:<br>Ricciardi, V., Wane, A., Singh Sidhu, B., Goode, C., Solomon, D., McCullough, E., Diekmann, F., Porciello, J., Jain, M., Randall, N., Mehrabi, Z.Evidence synthesis: Funding research for small-scale farmers in water scarce regions to achieve SDG 2.3. In Review. Nature Sustainability.<br>We use manually coded abstracts to build a natural language processing (NLP) model to include or exclude abstracts to our study. A deep learning model was developed using Bidirectional Encoder Representations from Transformers (BERT) and a cross entropy function to classify abstracts. This model performed better than other classifiers (e.g., optimized support vector machine (SVM) and naive bayes) across accuracy, precision, and recall metrics. This dataset is the predicted results.<br>This dataset is an input file for use in:https://github.com/vinnyricciardi/Ricciardi_etal_2020_ceres/blob/master/full_text_analysis.R<br><br>The data filename referred to in the code is: Validation Survey_February 17, 2020_12.13.csv<br>
DOI: 10.6084/m9.figshare.16870759.v1
title: Dataset "Microclimatic edge-to-interior gradients of European deciduous forests"

description: Dataset for the paper "Microclimatic edge-to-interior gradients of European deciduous forests" published in Agricultural and Forest Meteorology.
DOI: 10.6084/m9.figshare.28203218.v3
title: <b>Contrasting responses of plant diversity and soil microbial</b><b> </b><b>diversity to altered phosphorus supply</b><b> </b><b>diversity to altered phosphorus supply</b>

description: Biodiversity underpins critical ecological processes, yet its relationship with phosphorus (P) remains poorly understood globally. In particular, it is essential to explore how plant diversity and soil microbial diversity respond distinctly to changes in P availability on a global scale. This study combines meta-analysis and natural gradient analysis to assess the responses of plant and soil microbial diversity to altered P supply at a global scale. Specifically, we conducted a meta-analysis using 393 observations from 128 field P addition experiments, complemented by a natural gradient analysis of forest tree diversity and vascular plant diversity. Our results showed that P additions reduced plant richness by 8.5% and the Shannon index by 1.3% in global grasslands, while exerting minimal effects on soil bacterial and fungal diversity across major terrestrial ecosystems worldwide. Natural gradient analysis showed that both forest tree richness and vascular plant richness were significantly related to soil total Pconcentration, either positively or negatively, depend on the environmental variables controlled for partial correlation analyses. These findings collectively suggest that plant diversity exhibits greater sensitivity to altered soil P availability than soil microbial diversity.Therefore, improved understanding of the distinct responses of above- and below-ground biodiversity to altered nutrient supply provides a scientific foundation for implementing sound management practices of terrestrial functions and processes.
DOI: 10.6084/m9.figshare.5965450.v1
title: Appl Physiol Nutr Metab DOI: 10.1139/apnm-2017-0696

description: Accepted article and associated data for study to be published in Applied Physiology Nutrition and Metabolism. See article file for details on study procedures and statistical analysis.
DOI: 10.25442/hku.20235699.v1
title: Supporting data for "Time Perception Deficit in ADHD and Its Correlation with Early ADHD Symptoms and Early Academic Abilities"

description: This is a set of supporting data for the PhD thesis titled "Time Perception Deficit in ADHD and Its Correlation with Early ADHD Symptoms and Early Academic Abilities" <br> It contains sets of data of papers included in the study 1(meta-analysis), and raw data of measurement collected from the participants in the Study 2 and 3. It concerns human data and privacy information so all the participants were anonymised participant ID and please use with care.
DOI: 10.6084/m9.figshare.13200278.v1
title: Hypertension delays viral clearance and exacerbates airway hyperinflammation in patients with COVID-19

description: This dataset comprises single-cell RNA-Seq data of nasopharyngeal samples of 32 COVID-19 patients and 16 healthy controls, for a total of 48 samples. 25 COVID-19 patients and 10 controls were diagnosed with hypertension and treated with either ACE inhibitors (ACEi) or angiotensin receptor blockers(ARB) (SARS-CoV-2-positive: 10 ACEi and 15 ARB; SARS-CoV-2-negative: 6 ACEi and 4 ARB).<br>An in-depth description is presented in the manuscript "Delayed viral clearance and exacerbated airway hyperinflammation in hypertensive COVID-19 patients" (https://www.medrxiv.org/content/10.1101/2020.09.22.20199471v1).
DOI: 10.6084/m9.figshare.23356498.v1
title: Exploring sustainable mangrove management policy, challenges and structure: a case study of Nadi and Momi districts, Fiji Island

description: Besides being socially and ecologically beneficial for Fiji’s human needs, mangrove management often clashes with development interests, such as tourism threatening their sustainability. To address these issues, the study analyzes mangrove management in practice, especially governance and institutional arrangements at the local level, to better understand how these arrangements function and influence mangrove resources. The study highlights the experiences of four villages within the Momi and Nadi districts, which gives us rich insight into the local-level dynamics of mangrove management within different types of arrangements over mangrove forests. A total of four types of surveys and analysis were conducted in this study including content analysis, talanoa sessions,, questionnaire surveys and an ecological survey. The study found that the existing legallframework indicated several challenges that have contributed to the poor management of mangroves over the years. This includes fragmented policy, lack of clarity on jurisdiction over mangrove resources among multiple ministries and these aspects are challenges highlighted in the study. The mangrove structure in the Nadi mangrove area changed drastically over the years, whilst in Momi, the changes are not visible, both indicated by the respondent .(Ecological survey shows that the Momi district`s mangorve forest has the highest tree densities when compared to Nadi district. The findings of this study are expected to substantially impact sustainable management strategies in addressing the environmental, social and economic impact of development on mangrove loss. The study recommends a mechanism such as PES to sustainably manage mangrove ecosystems and support policy implementation.
DOI: 10.6084/m9.figshare.25308943.v1
title: Transfemoral Amputee Stumble Induction Dataset

description: A multivariate gait database pertaining to standing, walking, and induced stumbles for three transfemoral amputee subjects. Data are measured at 60 Hz and includes 2 9DoF IMU sensors attached to thigh and shank segments proximally to the four-bar knee joint. Each IMU contained three-dimensional magnetometer, gyroscope, and accelerometer. Stumbles are induced in three different methods - bungee, obstacle, and uneven. Stumble inductions are marked via a binary marker ("stumble" column, "1" or "0"), and files are labeled for which activity is being recorded.
DOI: 10.6084/m9.figshare.25649496.v1
title: The fasta sequences for bacteria

description: The fasta sequences for bacteria
DOI: 10.17632/2szmr4tg3z
title: Drinking Water Supply Technologies

description: Classification of technology options for Drinking Water Supply (DWS), classified by Capacity Requirement Level (CRL). It is a metric that defines the level a community must have to operate sustainably the DWS technology option. The DWS options are defined by five unit processes: Source Device, Treatment, Storage, and Distribution. The inventory of the DWS options was conducted based on the type of unit processes, and their classification was done using a machine learning algorithm.
DOI: 10.6084/m9.figshare.14185160.v1
title: Are plants in sown flower strips suitable for communities of wild bees? Pollination network approach in conservation biology

description: Raw data and supporting information accompanying the following manuscript: <br>Hadrava, J. et al. (2021). Are plants in sown flower strips suitable for communities of wild bees? Pollination network approach in conservation biology.
DOI: 10.6084/m9.figshare.19608132.v1
title: A dataset of diversity and distribution of rodents and shrews in China (1950-2021) v2

description: The rodents and shrews are important reservoirs for a large number of zoonotic pathogens. Here by performing a literature review, we determined the occurrence and distribution of rodents and shrews in China at three scales including province, city, and county levels. The peer-reviewed papers published in English and Chinese were collected, standard procedures were applied in reference books, field surveys and websites to remove duplicates, and information on recorded locations of rodents and shrews was extracted. The dataset contains 13,911 records of geo-referenced occurrences for 364 rodents and shrews distributed over 1,663 locations distinguished. As pathogens continue to emerge from rodents and shrews, this dataset could assist efforts to put preliminary bounds around a variety of spatial analyses of rodents and shrews, facilitate a better understanding of the transmission risk of the pathogens they carry, and be helpful for assessing the risk of future emergence of rodent-borne zoonoses.
DOI: 10.6084/m9.figshare.24203811.v1
title: Supplementary Material for: A case of tumor lysis syndrome during palliative radiotherapy for breast cancer metastases

description: Tumor lysis syndrome (TLS) is the rapid disintegration of a malignant tumor treated with anticancer drugs or radiation, causing electrolyte abnormalities such as elevated uric acid levels, elevated potassium and phosphorus levels, and decreased calcium levels. These abnormalities can lead to hypotension, renal dysfunction, consciousness disorders, and even death in some cases. The current patient was a 65-year-old woman who had breast cancer with local invasion, lung metastasis, and bone metastasis from the time of the initial disease onset. Despite the administration of various chemotherapy and hormone therapy regimens, the tumor increased gradually, and at 2 years and 5 months after the initial onset, pain and bleeding from metastatic infiltration of the cervical lymph nodes were noted. Therefore, radiotherapy was indicated for palliation of pain and bleeding caused by metastatic invasion of the cervical lymph nodes. Irradiation (30 Gy/10 fr) was performed with a 3-field technique using 4MVX and 10MVX. Approximately 11 h after the initial irradiation, symptoms such as respiratory distress, tachycardia, and hypotension were observed. Blood tests revealed hyperuricemia and hyperkalemia, leading to a diagnosis of TLS. Dialysis and electrolyte correction were immediately initiated resulting in normalization of electrolytes and stabilization of the blood pressure. It is crucial to understand that TLS is relatively rare but can occur after radiation therapy or in solid tumors, and warrants a prompt response if suspected based on symptoms or blood findings.
DOI: 10.6084/m9.figshare.25557900.v1
title: Data_file_11.xlsx

description: Whole genome statistics of the <i>Bacillus spizizenii </i>(kcgeb_S11)
DOI: 10.6084/m9.figshare.4028622.v6
title: Processed expression data of 40 tissues for CAGE human PRJDB1099 (FANTOM5)

description: A tab-separated values (TSV) file for RefEx_expression_CAGE40_human_PRJDB1099<br>A value of "-1" means not applicable(N/A).
DOI: 10.17632/58x5fxx67y
title: Dataset of Metaheuristics for the flow shop scheduling problem with maintenance activities integrated

description: This dataset is linked to the paper submitted with the same name in Data In Brief
DOI: 10.6084/m9.figshare.21532440.v1
title: Data.zip

description: Time series classification dataset under the practical constraint of small number of available training examples.
DOI: 10.6084/m9.figshare.22825787.v1
title: Tryp: a dataset of microscopy images of unstained thick blood smears for trypanosome detection

description: If you use the Tryp dataset, please cite the following:Esla Timothy Anzaku, Mohammed Aliy Mohammed, Utku Ozbulak, Jongbum Won, Hyesoo Hong, Janarthanan Krishnamoorthy, Sofie Van Hoecke, Stefan Magez, Arnout Van Messem, Wesley De Neve "Tryp: a dataset of microscopy images of unstained thick blood smears for trypanosome detection." Scientific Data 10, 716 (2023). https://doi.org/10.1038/s41597-023-02608-yThe <b>Tryp dataset</b> provides bounding box annotations for detecting<i> Trypanosoma brucei brucei</i> in microscopy images of unstained thick blood smears. Extracting the <b>Tryp.zip</b> file unveils three main folders:positive_imagesnegative_imagesvideosThe<b> videos</b> folder holds all the originally recorded videos, which were used to extract the images in the Tryp dataset and are categorized into <b>positive</b> and <b>negative</b> folders.Inside the <b>positive_images</b> folder are three more folders:trainvalidationtestEach folder contains two more folders,<b> images</b> and <b>labels</b>, and a JSON file. The <b>images</b> and <b>labels</b> folders hold the corresponding images and annotation files compatible with the YOLOv7 model. On the other hand, the JSON files have annotations in the MS COCO format, which is suitable for training the Faster R-CNN and RetinaNet models using the implementation by Torchvision.The related code is available at https://github.com/esla/trypanosome_parasite_detection<br>
DOI: 10.6084/m9.figshare.26035177.v1
title: <b>Enhancing Human-AI Interactions: The Impact of Pseudo-code Engineering on Improving Predictability and Stability in Large Language Models</b> - Appendix A

description: This research focuses on an innovative approach to enhancing the predictability and stability of interactions between humans and Large Language Models (LLMs), such as ChatGPT, through the use of pseudo-code. By investigating three distinct interaction formats (natural language, a hybrid of natural language and pseudo-code, and exclusive pseudo-codo) this study utilizes a mixed-methodology approach that combines qualitative content analysis with quantitative analysis methods like standard deviation and coefficient of variation.Key findings from this study indicate that exclusive use of pseudo-code in interactions with ChatGPT increases the predictability and stability of the model's outputs by 11%, leading to responses that are more detailed and logically structured. On the other hand, prompts that integrate both natural language and pseudo-code see a 20% increase in content richness compared to those that use only natural language. This suggests that a structured, logical format, developed through pseudo-code engineering, significantly improves the effectiveness of human-LMM interactions.The implications of this research are substantial, suggesting that the principles of pseudo-code engineering could be beneficial not only for ChatGPT but also for other generative LLMs like Claude, Gemini, and Llama. The application of these findings could potentially transform GenAI-assisted activities across various sectors including education, customer support, and more, thereby advancing strategies in human-computer interaction.
DOI: 10.6084/m9.figshare.27328299.v1
title: Increased water use efficiency promotes soil organic carbon sequestration across the Tibetan Plateau

description: The data we provide include basic soil site information and a historical reconstruction grid of soil organic carbon stocks based on digital soil mapping technology. They will help reviewers and readers to further understand our research.
DOI: 10.6084/m9.figshare.28529207.v3
title: <b>Unlocking Pumped</b> <b>H</b><b>ydroelectric Storage Potential for</b><b> Electricity</b><b> Decarbonization</b>

description: Large-scale energy storage is essential for balancing wind and solar variability in variable renewable energy (VRE) systems. Pumped hydroelectric storage (PHS) is the most mature and scalable long-duration storage solution<sup>1-</sup><sup>6</sup>. We assessed PHS feasibility for VRE support using a unified high-resolution framework that identifies open-loop sites linked to lakes and 2.89 million rivers, as well as low-impact closed-loop sites. Our assessment provides an upper-bound estimate of global PHS resources, with a capacity estimated at 28.85 ± 3.75 trillion kWh, sufficient to meet current global electricity demand and contributes to a fully renewable grid to support electricity decarbonization goals. Addressing spatial mismatches between electricity supply and demand requires long-distance transmission and grid enhancements, enabling resource-rich regions to support electricity decarbonization in other geographical areas. Our findings provide a quantitative foundation for energy planning, emphasizing the need for strategic investment in long-term storage, transmission infrastructure, and supportive policies. Unlocking PHS potential can further advance renewable energy integration and accelerate global electricity decarbonization.
DOI: 10.6084/m9.figshare.12937340.v1
title: SNP, SV and scripts for RYP1 genome paper

description: The SNP files of 149 peach and wild 37 relatives (Prunus kansuensis) were generated by GATK v4.0 pipeline. The SNP sites were filtered by missing rate (&lt;50%) and maf (&gt;0.05). The reference genome is Rui You Pan1 genome. The SVs were called by MantaSV and were genotyped by Paragraph.
DOI: 10.6084/m9.figshare.15157263.v1
title: GPS Coordinates of 18,482 Crop Fields in East Africa with Improved Accuracy using Planet Imagery and Yolo v5 Object Detection Model

description: Georeferenced crop yield prediction is a valuable tool for agronomists and policymakers. One challenge with many existing datasets is that of location accuracy. GPS locations for fields can end up offset from the true location due to sensor inaccuracies or from locations being collected at the edges of fields rather than the field centers. This makes it harder to connect remote-sensed data to the yield values. The goal of this project was to produce a method that can help correct these location offsets by finding the most probable field center given an input location. We prepared and hosted a competition on Zindi (https://zindi.africa) where competitors model the problem using state-of-the-art data science techniques. We provided the competitors with satellite images of fields along with their corresponding manually annotated correct centers. Additionally, we also provided approximate plot size and measured yield in case these help with creating their solutions. Original positions are considered images' centers as (0,0) and a displacement vector for each field in the training set was provided. The goal of the competition was to predict these vectors for each vector in the test set. This dataset includes the locations of 18,481 crop fields across Kenya, Tanzania, and Rwanda, collected in 2016-2017 with mixed qualities and their error-corrected ones from the winning solution using Planet satellite imagery and the Yolo v5 object detection model.<br> <br>
DOI: 10.6084/m9.figshare.21776321.v2
title: Table S2. Normality Test

description: Normality Test