cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4478266
title: Variational Inference for Learning Representations of Natural Language Edits

description: Performance Evaluation of Edit Representations (PEER), the dataset we use in the paper "Variational Inference for Learning Representations of Natural Language Edits".
description: {"references": ["https://arxiv.org/abs/2004.09143"]}
DOI: 10.5281/zenodo.4585872
title: Picoquant spike question example data

description: Example data for the question posed at https://github.com/AndrewGYork/picoquant_spike_question
DOI: 10.5281/zenodo.4585871
title: Picoquant spike question example data

description: Example data for the question posed at https://github.com/AndrewGYork/picoquant_spike_question
DOI: 10.6084/m9.figshare.14171258
title: Hylobius warreni mark recapture data

description: Mark-recapture data for a population estimate experiment on the Warren root collar weevil, <i>Hylobius warreni </i>(Coleoptera: Curculionidae). There are two tabs in this XLSX workbook.
DOI: 10.6073/pasta/1b5c34506c0c42b532705ac3fa7a5d47
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 2 meteorological station: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at 10 cm at CSIS Block-2. Collection of soil volumetric water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured at 10 cm depth at 3 locations at each of the 4 plots per block. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded every 30 minutes at an automated meteorological station installed at Jornada LTER CSIS Block-2 site. This is an ONGOING dataset.
DOI: 10.6073/pasta/7358aaa6d26cbc9217f50aa6cdd4ba39
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 2 meteorological station: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily Average of 30-minute Soil Volumetric Water Content data at 10 cm at CSIS Block-2. Collection of soil water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured every 30 minutes at 10 cm depth at 3 locations at each of the 4 plots per block and averaged for the daily value. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded at an automated meteorological station installed at Jornada LTER CSIS Block-2 site. This is an ONGOING dataset.
DOI: 10.6073/pasta/98450405ce1229b691e55997f1d51e1f
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 2 meteorological station: Daily summary data: 2013 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-2 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.6073/pasta/76166b65a10b7cba5ba709c1426c391e
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 2 meteorological station: 1-second summary precipitation data: 2017 - ongoing

description: 1-second summary precipitation data at CSIS Block-2 met station. Total precipitation per second is recorded only if there is measurable precipitation. This is recorded at an automated meteorological station installed at Jornada LTER CSIS Block-2 site.. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset. IMPORTANT: Rainfall is only recorded when a bucket tip occurs on the tipping bucket rain gauge. If there is missing data due to equipment or other problems, there will be no indication of this within this dataset. The user needs to review precipitation values in the 30 minute or hourly summary datasets to determine if there are missing data in this 1 second detailed precipitation dataset.
DOI: 10.15468/kysuqw
title: Designación del lectotipo de Ectinogonia costata (Fairmaire) (Coleoptera: Buprestidae), y descripción de una nueva especie de Ectinogonia (Ectinogonia) Spinola de Chile

description: This dataset contains the digitized treatments in Plazi based on the original journal article Pineda, Cristian, Mondaca, José (2020): Designación del lectotipo de Ectinogonia costata (Fairmaire) (Coleoptera: Buprestidae), y descripción de una nueva especie de Ectinogonia (Ectinogonia) Spinola de Chile. Insecta Mundi 2020 (790): 1-8, DOI: http://doi.org/10.5281/zenodo.4564869
DOI: 10.6073/pasta/3bb5fae0db66a7cab4d69c6df7f29693
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 3 meteorological station: 30-minute summary data: 2017 - ongoing

description: This data package contains 30-minute air temperature, relative humidity, and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-1 met station. Average air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively. This is an ONGOING dataset.
DOI: 10.15468/nykpr3
title: Systematic status of the Chilean genus Carlota Arias-Bohart, 2014 (Coleoptera: Elateridae: Agrypninae: Agrypnini)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Arias-Bohart, Elizabeth T. (2020): Systematic status of the Chilean genus Carlota Arias-Bohart, 2014 (Coleoptera: Elateridae: Agrypninae: Agrypnini). Insecta Mundi 2020 (791): 1-7, DOI: http://doi.org/10.5281/zenodo.4564876
DOI: 10.25405/data.ncl.14135573
title: Relating Post-Mortem Hippocampal Neurogenesis to Longitudinally Recorded Severity of Keel Bone Fractures in Adult Laying Hens

description: In commercial flocks of laying hens, keel bone fractures (KBFs) are prevalent and associated with signs of poor welfare, including behavioural indicators of pain. However, whether their impact is severe enough to induce a depressive-like state of chronic stress is unknown. As levels of adult hippocampal neurogenesis (AHN) in the brains of mammals and birds are suppressed by the chronic experience of stress, this measure may be applicable as a neural biomarker of subjective welfare state. Radiographs obtained longitudinally (at 11 timepoints) from Lohmann Brown laying hens housed in a commercial multi-tier aviary were used to score the severity of naturally occurring KBFs between the ages of 21 and 62 weeks. Individual mobility data was collected using an infrared tracking system to record transitions between aviary zones. Immunohistochemistry was used to stain immature neurons expressing the protein marker doublecortin (DCX). Focal hens with severe KBFs at the final timepoint (3-4 weeks prior to sampling, n=15) had lower densities of immature DCX<sup>+</sup> multipolar and bipolar neurons in the hippocampal formation (HF) than focal hens with minimal fractures at this time (n=9). KBF severity scores at this time also negatively predicted DCX<sup>+</sup> cell numbers across the whole HF on an individual level, while the duration of time since a hen had acquired their first fracture tended to negatively correlate with numbers of DCX<sup>+</sup> neurons in the caudal HF. Activity levels at the final timepoint (3-4 weeks prior to sampling) were not associated with AHN. KBFs thus appear to present a source for chronic stress to laying hens, inducing a negative affective state that lasts at least 3-4 weeks. Management steps to reduce their occurrence are therefore likely to have significant benefits for welfare. Ethical approval for the study was obtained from the Veterinary Office of the Canton of Bern in Switzerland (approval number BE31/15) and the the Animal Welfare and Ethical Review Body at Newcastle University (Project ID #549). The experiment complied with Swiss regulations regarding the treatment of experimental animals. <br>
DOI: 10.25405/data.ncl.14135573.v1
title: Relating Post-Mortem Hippocampal Neurogenesis to Longitudinally Recorded Severity of Keel Bone Fractures in Adult Laying Hens

description: In commercial flocks of laying hens, keel bone fractures (KBFs) are prevalent and associated with signs of poor welfare, including behavioural indicators of pain. However, whether their impact is severe enough to induce a depressive-like state of chronic stress is unknown. As levels of adult hippocampal neurogenesis (AHN) in the brains of mammals and birds are suppressed by the chronic experience of stress, this measure may be applicable as a neural biomarker of subjective welfare state. Radiographs obtained longitudinally (at 11 timepoints) from Lohmann Brown laying hens housed in a commercial multi-tier aviary were used to score the severity of naturally occurring KBFs between the ages of 21 and 62 weeks. Individual mobility data was collected using an infrared tracking system to record transitions between aviary zones. Immunohistochemistry was used to stain immature neurons expressing the protein marker doublecortin (DCX). Focal hens with severe KBFs at the final timepoint (3-4 weeks prior to sampling, n=15) had lower densities of immature DCX<sup>+</sup> multipolar and bipolar neurons in the hippocampal formation (HF) than focal hens with minimal fractures at this time (n=9). KBF severity scores at this time also negatively predicted DCX<sup>+</sup> cell numbers across the whole HF on an individual level, while the duration of time since a hen had acquired their first fracture tended to negatively correlate with numbers of DCX<sup>+</sup> neurons in the caudal HF. Activity levels at the final timepoint (3-4 weeks prior to sampling) were not associated with AHN. KBFs thus appear to present a source for chronic stress to laying hens, inducing a negative affective state that lasts at least 3-4 weeks. Management steps to reduce their occurrence are therefore likely to have significant benefits for welfare. Ethical approval for the study was obtained from the Veterinary Office of the Canton of Bern in Switzerland (approval number BE31/15) and the the Animal Welfare and Ethical Review Body at Newcastle University (Project ID #549). The experiment complied with Swiss regulations regarding the treatment of experimental animals. <br>
DOI: 10.25405/data.ncl.14135942
title: Relating Adult Hippocampal Neurogenesis to Tonic Immobility and Longitudinal Ranging Behaviour in Commercial Laying Hens

description: Access to outdoor areas is provided as a means of enhancing welfare in commercial systems for laying hens, but proportions of time spent on the range by individual birds vary substantially. Adult hippocampal neurogenesis in mammals and birds is upregulated by positive experiences including environmental enrichment and exercise, while basal levels of proliferation have been associated with individual differences in reactive versus proactive coping style. We thus sought to explore whether individual differences in use of outdoor areas and in tonic immobility (TI) responses (indicative of fearfulness) were associated with hippocampal cell proliferation and neuronal differentiation. Radio frequency identification technology was used to track the ranging behaviour of 440 individual focal hens within a commercially relevant system over a 72-day period, after which tonic immobility durations were measured. Following hippocampal tissue collection from 58 focal hens, proliferation and neuronal differentiation were measured through quantitative PCR for proliferating cell nuclear antigen (<i>PCNA</i>) and doublecortin (<i>DCX</i>) mRNA respectively. Variation in ranging was not related to TI responses. Greater time spent in outdoor areas (the grassy range and stone yard) was associated with higher <i>PCNA</i> expression in the rostral subregion, while individual differences in TI duration positively correlated with proliferation over the whole HF. Basal proliferation in the chicken HF may thus be an indicator of reactivity, while levels in the rostral region may be stimulated by ranging experience. <i>DCX</i> expression in the caudal HF negatively co-varied with time on the range, but was not associated with TI duration. This suggests that ranging outside may also be associated with stress. Within laying hen flocks, individual differences in hippocampal plasticity thus relate independently to coping style and use of external areas.Experimental use of the animals was approved by the Bern Kantonal Authority (BE-46/16) and the Animal Welfare and Ethical Review Body at Newcastle University (Project ID #549), and procedures complied with Swiss regulations regarding their treatment. Standard commercial protocols were followed, including ad libitum access to food and water. <br>
DOI: 10.25405/data.ncl.14135942.v1
title: Relating Adult Hippocampal Neurogenesis to Tonic Immobility and Longitudinal Ranging Behaviour in Commercial Laying Hens

description: Access to outdoor areas is provided as a means of enhancing welfare in commercial systems for laying hens, but proportions of time spent on the range by individual birds vary substantially. Adult hippocampal neurogenesis in mammals and birds is upregulated by positive experiences including environmental enrichment and exercise, while basal levels of proliferation have been associated with individual differences in reactive versus proactive coping style. We thus sought to explore whether individual differences in use of outdoor areas and in tonic immobility (TI) responses (indicative of fearfulness) were associated with hippocampal cell proliferation and neuronal differentiation. Radio frequency identification technology was used to track the ranging behaviour of 440 individual focal hens within a commercially relevant system over a 72-day period, after which tonic immobility durations were measured. Following hippocampal tissue collection from 58 focal hens, proliferation and neuronal differentiation were measured through quantitative PCR for proliferating cell nuclear antigen (<i>PCNA</i>) and doublecortin (<i>DCX</i>) mRNA respectively. Variation in ranging was not related to TI responses. Greater time spent in outdoor areas (the grassy range and stone yard) was associated with higher <i>PCNA</i> expression in the rostral subregion, while individual differences in TI duration positively correlated with proliferation over the whole HF. Basal proliferation in the chicken HF may thus be an indicator of reactivity, while levels in the rostral region may be stimulated by ranging experience. <i>DCX</i> expression in the caudal HF negatively co-varied with time on the range, but was not associated with TI duration. This suggests that ranging outside may also be associated with stress. Within laying hen flocks, individual differences in hippocampal plasticity thus relate independently to coping style and use of external areas.Experimental use of the animals was approved by the Bern Kantonal Authority (BE-46/16) and the Animal Welfare and Ethical Review Body at Newcastle University (Project ID #549), and procedures complied with Swiss regulations regarding their treatment. Standard commercial protocols were followed, including ad libitum access to food and water. <br>
DOI: 10.25405/data.ncl.14135153
title: Comparison of Adult Neurogenesis in the Laying Hen Hippocampal Formation for Birds with Differing Physical Body Conditions On Farm

description: Adult hens approaching the end of lay (65/66 weeks-of-age) were sampled from a multi-tier aviary with an outdoor range, and an enriched colony cage system, on adjacent sites of a local egg production farm. Body size, feather cover and redness of the comb were used to select 12 birds in good physical condition and 12 birds in poor condition from each system. Using immunohistochemistry, immature neurons expressing doublecortin (DCX) were quantified in serial hippocampal sections. Additionally, expression of mRNA for inflammatory cytokines was quantified in the spleen. Data regarding body mass and spleen mass was also recorded.For practical reasons, it was not possible to compare the same strain/genotype of hen between the two housing systems. For this reason, 14-week-old laying hen pullets of each strain were also sampled directly from adjacent barns of the same rearing farm, where they had been housed in almost identical conditions. The same measures were taken from this sample, to provide a baseline for any strain differences which may have existed before the experience of differing adult housing. <br>This study was approved by the Animal Welfare and Ethical Review Body at Newcastle University (Project ID #702).
DOI: 10.25405/data.ncl.14135153.v1
title: Comparison of Adult Neurogenesis in the Laying Hen Hippocampal Formation for Birds with Differing Physical Body Conditions On Farm

description: Adult hens approaching the end of lay (65/66 weeks-of-age) were sampled from a multi-tier aviary with an outdoor range, and an enriched colony cage system, on adjacent sites of a local egg production farm. Body size, feather cover and redness of the comb were used to select 12 birds in good physical condition and 12 birds in poor condition from each system. Using immunohistochemistry, immature neurons expressing doublecortin (DCX) were quantified in serial hippocampal sections. Additionally, expression of mRNA for inflammatory cytokines was quantified in the spleen. Data regarding body mass and spleen mass was also recorded.For practical reasons, it was not possible to compare the same strain/genotype of hen between the two housing systems. For this reason, 14-week-old laying hen pullets of each strain were also sampled directly from adjacent barns of the same rearing farm, where they had been housed in almost identical conditions. The same measures were taken from this sample, to provide a baseline for any strain differences which may have existed before the experience of differing adult housing. <br>This study was approved by the Animal Welfare and Ethical Review Body at Newcastle University (Project ID #702).
DOI: 10.15468/nbmv7j
title: New species, new records and synonymy of Mexican Corthylus Erichson, 1834 (Coleoptera: Curculionidae: Scolytinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Atkinson, Thomas H. (2020): New species, new records and synonymy of Mexican Corthylus Erichson, 1834 (Coleoptera: Curculionidae: Scolytinae). Insecta Mundi 2020 (792): 1-25, DOI: http://doi.org/10.5281/zenodo.4564890
DOI: 10.5281/zenodo.4583224
title: Data For: Where are Mars' Hypothesized Ocean Shorelines? Large Lateral and Topographic Offsets Between Different Versions of Paleoshoreline Maps.

description: Data used in the analysis of the Arabia and Deuteronilus Levels for Sholes et al. (2021) submitted to the Journal of Geophysical Research: Planets. Contains ArcGIS-ready data and CSV files for all digitized, mapped, and provided putative martian paleoshorelines analyzed in the paper. Also includes measured and calculated offset data, figures, and code used for analysis/plotting.
DOI: 10.17632/gvdsx6kcjx.1
title: Data for: Comparative study of municipal solid waste incinerator fly ash reutilization in China: environmental and economic performances

description: Content of Supplementary Materials 1 Sheet A Prerequisites and assumptions 2 Sheet B Material Flow Analysis (MFA) 3 Sheet C Life cycle inventory 4 Sheet D Life cycle impact assessment 5 Sheet E Sensitivity analysis-LCA 6 Sheet F Economic performance 7 Sheet G Integrated analysis (w-LCC) 8 Sheet H Externality costs 9 Sheet I Supplementary tables and figures
DOI: 10.6073/pasta/d9b1c86f29b8a839d491345c1b106d01
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 3 meteorological station: 5-minute summary wind and air temperature data: 2013 - ongoing

description: This data package contains 5-minute air temperature and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-3 met station. Average air temperature, wind speed, and wind direction are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This is a subset of baseline weather data collected at the 15 Jornada Basin LTER CSIS study blocks, New Mexico. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.7303/syn25116494
title: Large-Scale Deep Multi-Layer Analysis of Alzheimer’s Disease Brain Reveals Strong Proteomic Disease-Related Changes Not Observed at the RNA Level
DOI: 10.6073/pasta/05346c97388468ebcf55fc386e2e9e4e
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 3 meteorological station: 1-hour summary data: 2017 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-3 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.34740/kaggle/ds/1179216
title: Dogecoin Historical Data