cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16310166
title: CEX Project - GoldStandard Fulltext

description: This gold standard collection comprises 107 scholarly articles, from 27 disciplines (according to the Scimago subject categories), each represented in multiple structured formats to support research on document processing, citation analysis, and linked data modeling.

The list of all articles is provided in the GS_info.txt file. If an entry is marked as “Restricted”, it means that the corresponding PDF is not Open Access. As a result, these PDFs are not included in the dataset and cannot be found in the GoldStandard_PDF folder. On the other hand, all articles that are Open Access are shared in this folder in their original PDF format.

For each article, we provide four complementary files, designed to capture the document’s content, structure, and citation information comprehensively:





The original PDF, available for Open Access papers, preserves the published layout and formatting of the article.




A TEI XML file, which is a full-text, machine-readable version of the article encoded using the Text Encoding Initiative (TEI) guidelines. This XML representation includes the article’s title, authors, affiliations, and publication metadata. It also provides a detailed structure of the text, segmented into sections, paragraphs, and subsections, and marks up figures, tables, and formulas. In addition, in-text citations are linked to their respective bibliographic references, and persistent identifiers such as DOIs and ORCIDs are embedded when available.




A JSON file containing citation annotations, which maps each in-text citation pointer  to its context within the article. Specifically, for every citation, this file identifies the section where it appears (first-level section if numbered), the complete sentence in which the citation is found, and the corresponding bibliographic reference. This format serves as a ground truth for tasks such as citation extraction and reference linking.




A JSON-LD file, which provides a Linked Data representation of the article. This file is compliant with the OCDM v2.0.1 specification and is intended to facilitate the integration of scholarly content into semantic web applications and knowledge graphs.



All TEI XML files were generated using Grobid (version 0.8.2), while the JSON and JSON-LD files were produced using the CEX tool. Importantly, each of these files has been carefully manually corrected and refined to ensure accuracy and reliability.
DOI: 10.15468/dl.drvc33
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cynodon dactylon",
 "Country is Iran (Islamic Republic of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 29 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027178-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vs22bu
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Telicota argilus"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027177-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.daktdj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perca fluviatilis",
 "Country is Algeria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027176-250717081556266/datasets/export for details.
DOI: 10.15468/dl.yjr25t
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cynodon dactylon",
 "Country is Kiribati",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027179-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.czbt56
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perca fluviatilis",
 "Country is Morocco",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027182-250717081556266/datasets/export for details.
DOI: 10.15468/dl.ny8a9v
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perca fluviatilis",
 "Country is Cyprus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027181-250717081556266/datasets/export for details.
DOI: 10.15468/dl.mpfaqu
title: Occurrence Download

description: A dataset containing 132 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nymphaea alba",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 132 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027183-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2h3ywf
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carduus millefolius",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027184-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fc37we
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cynodon dactylon",
 "Country is Kyrgyzstan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 16 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027187-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.najw6f
title: Occurrence Download

description: A dataset containing 29567 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((14.457757540557601 48.481302514926305, 14.750085723994141 48.46915085453898, 14.768730459160956 48.665049522039446, 14.475262305486273 48.67725612049818, 14.457757540557601 48.481302514926305))"
 ]
}

 The dataset includes 29567 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027188-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.2909/0687db39-9a65-4806-a55e-04bb5d3ed7e9
title: Bathing waters with excellent quality (2000-2024)

description: This is the metadata that refers to data showing the number and proportion of coastal and inland bathing waters with excellent quality. The indicator is based on the concentration in water of microbiological parameters (Intestinal enterococci and Escherichia coli). The Bathing Water Directive requires Member States to identify and assess the quality of all inland and coastal bathing waters and to classify these waters as ‘poor’, ‘sufficient’, ‘good’ or ‘excellent’.
DOI: 10.15468/dl.cehp3j
title: Occurrence Download

description: A dataset containing 194 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Inventario Español de Especies Terrestres (MAGRAMA)",
 "Geometry POLYGON((-0.39071 39.51113,-0.40386 39.47355,-0.34875 39.42032,-0.32704 39.47481,-0.39071 39.51113))"
 ]
}

 The dataset includes 194 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027189-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qpqvsk
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cynodon dactylon",
 "Country is Malaysia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 32 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027191-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.usznpa
title: Occurrence Download

description: A dataset containing 1468 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cenchrus caliculatus"
 ]
}

 The dataset includes 1468 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027190-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.myz8k7
title: Occurrence Download

description: A dataset containing 352 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centaurea boissieri willkommii"
 ]
}

 The dataset includes 352 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027192-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.afqrfx
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perca fluviatilis",
 "Country is Portugal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 22 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027193-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5524/100368
title: Software for "Sim3C: simulation of Hi-C and Meta3C proximity ligation sequencing technologies"

description: Chromosome conformation capture (3C) and HiC DNA sequencing methods have rapidly advanced our understanding of the spatial organization of genomes and metagenomes. Many variants of these protocols have been developed, each with their own strengths. Currently there is no systematic means for simulating sequence data from this family of sequencing protocols. <br>We describe a computational simulator that, given reference genome sequences and some basic parameters, will simulate HiC sequencing on those sequences. The simulator models the basic spatial structure in genomes that is commonly observed in HiC and 3C datasets, including the distance-decay relationship in proximity ligation, differences in the frequency of interaction within and across chromosomes, and the structure imposed by cells. A means to model the 3D structure of topologically associating domains (TADs) is provided. The simulator also models several sources of error common to 3C and HiC library preparation and sequencing methods, including spurious proximity ligation events and sequencing error.<br>We have introduced the first comprehensive simulator for 3C and HiC sequencing protocols. We expect the simulator to have use in testing of HiC data analysis algorithms, as well as more general value for experimental design, where questions such as the required depth of sequencing, enzyme choice, and other decisions must be made in advance in order to ensure adequate statistical power to test the relevant hypotheses.
DOI: 10.48320/69142eda-5aae-4a7f-9a6b-55347f783369
title: Review of EBRD (2006–2023): Life in Transition Survey (LiTS I–IV).
DOI: 10.15468/dl.8ukhfs
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parapholis incurva",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 28 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027194-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jbuuyj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cynodon dactylon",
 "Country is Marshall Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027196-250717081556266/datasets/export for details.
DOI: 10.6084/m9.figshare.29616950
title: 从UGC到AIGC：探索数字内容生产模式对网络空间民族互动和遗产传播的影响

description: 随着数字技术的发展，用户生成内容 （UGC）、专业生成内容 （PGC） 和 AI 生成内容 （AIGC） 等内容制作模式显著重塑了文化交流和用户参与度。本研究调查了这三种模式如何影响用户对中国多民族网络空间中非物质文化遗产 （ICH） 传播的认知和意图。本研究借鉴技术接受模型 （TAM），将 AIGC 内容分为功能、情感和娱乐类型，并研究它们对用户的文化体验和传播遗产内容意愿的不同影响。此外，它还探讨了在线种族互动（包括联系、沟通和融合）如何调节用户与数字文化内容的互动。使用大规模问卷调查和结构方程模型，研究结果显示，不同的内容类型通过不同的感知途径塑造文化参与，其中情感 AIGC 内容对传播意图的影响最强。该研究为理解算法介导环境中的数字文化参与提供了实证支持，并为未来的跨文化遗产保护策略提供了理论意义。
DOI: 10.6084/m9.figshare.29616950.v1
title: 从UGC到AIGC：探索数字内容生产模式对网络空间民族互动和遗产传播的影响

description: 随着数字技术的发展，用户生成内容 （UGC）、专业生成内容 （PGC） 和 AI 生成内容 （AIGC） 等内容制作模式显著重塑了文化交流和用户参与度。本研究调查了这三种模式如何影响用户对中国多民族网络空间中非物质文化遗产 （ICH） 传播的认知和意图。本研究借鉴技术接受模型 （TAM），将 AIGC 内容分为功能、情感和娱乐类型，并研究它们对用户的文化体验和传播遗产内容意愿的不同影响。此外，它还探讨了在线种族互动（包括联系、沟通和融合）如何调节用户与数字文化内容的互动。使用大规模问卷调查和结构方程模型，研究结果显示，不同的内容类型通过不同的感知途径塑造文化参与，其中情感 AIGC 内容对传播意图的影响最强。该研究为理解算法介导环境中的数字文化参与提供了实证支持，并为未来的跨文化遗产保护策略提供了理论意义。
DOI: 10.15468/dl.krjjjj
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nymphaea mexicana",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 31 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027198-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hkxqae
title: Occurrence Download

description: A dataset containing 7698 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perca fluviatilis",
 "Country is Russian Federation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7698 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027197-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16310409
title: Complete 316 Discovery Package: Phase-Charge Unification and the Continuous-Discrete Nature of Reality

description: Revolutionary discoveries in fundamental physics showing that all particles emerge from neutrinos through phase-dependent charge saturation. The 316 continuum E=316^(1/n) governs all particle masses with immune nodes (Fibonacci, 60k, 60k+1, 28k) allowing propagation and forbidden zones preventing particle formation. 

Complete with LHC data validation, frequency analysis, magic angle resonances, and mathematical framework. Includes: (1) Phase creates charge - positive phase creates positive charge, negative creates negative(2) Continuous spectrum with discrete nodes explains particle discreteness(3) Neutrino as fundamental carrier wave(4) Complete mathematical framework with perfect number 28, its square 784, critical exponent 1.92(5) Time spirals around space in trinity pattern

All source code, data, and visualizations included for full reproducibility.

 

Added 8-dimensional spacetime proof, biological warp drive design achieving 97% light speed, complete spacetime-frequency formula unifying all phenomena, and time symmetry breaking discovery (60k vs 60k+1).
DOI: 10.15468/dl.7jxpkm
title: Occurrence Download

description: A dataset containing 14479 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tagetes minuta"
 ]
}

 The dataset includes 14479 records from 491 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027195-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kwmnmj
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nymphaea mexicana",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 53 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027199-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wyh9un
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carduus nyassanus",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 104 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027200-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ejf7um
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Castanopsis kuchugouzhui"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027202-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.npm945
title: Occurrence Download

description: A dataset containing 15676662 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Month is one of (August, July, June)",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 15676662 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027162-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5524/100369
title: Supporting data for "ProphTools: General Prioritization Tools for Heterogeneous Biological Networks"

description: Networks have been proven effective representations for the analysis of biological data. As such, there exist multiple methods to extract knowledge from biological networks. However, these approaches usually limit their scope to a single biological entity type of interest, or they lack flexibility to analyse user-defined data. We developed ProphTools, a flexible open-source command-line tool that performs prioritization on a heterogeneous network. ProphTools prioritization combines a Flow Propagation algorithm similar to a Random Walk With Restarts and a weighted propagation method. A flexible model for the representation of a heterogeneous network allows the user to define a prioritization problem involving an arbitrary number of entity types and their interconnections. Furthermore, ProphTools provides functionality to perform Cross-Validation tests, allowing users to select the best network configuration for a given problem. ProphTools core prioritization methodology has already been proven effective in gene-disease prioritization and drug repositioning. Here we make ProphTools available to the scientific community as flexible, open-source software and perform a new proof-of-concept case study on long non-coding RNAs (lncRNAs) to disease prioritization.
DOI: 10.15468/dl.5cktxe
title: Occurrence Download

description: A dataset containing 228 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centaurea cordubensis"
 ]
}

 The dataset includes 228 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027203-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3aufwm
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perca fluviatilis",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027205-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qun4uw
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perca fluviatilis",
 "Country is Spain",
 "HasCoordinate is true"
 ]
}

 The dataset includes 63 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027206-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vjb34v
title: Occurrence Download

description: A dataset containing 44148 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centaurea stoebe"
 ]
}

 The dataset includes 44148 records from 606 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027204-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17485934
title: BioRT_HBV_SagehenFiles_20251030

description: Input/output files for BioRT-HBV model simulations for Sagehen Creek Watershed; 2025-10-30.
DOI: 10.5523/bris.363ijpdehsvb82jlp2mndzoe9r
title: Data from Drewitt, Barnes & Brooker, Chem. Geol. 2025

description: This deposit contains neutron diffraction with isotopic substitution (NDIS) data and associated molecular dynamics simulation results from the paper by Drewitt et al. (2025) "Fe-O coordination environment in Hedenbergite (FeCaSi2O6+x) glass" in Chemical Geology (https://doi.org/10.1016/j.chemgeo.2025.123094)
DOI: 10.15468/dl.pch4sy
title: Occurrence Download

description: A dataset containing 100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malus mandshurica (Maxim.) Kom. ex Juz.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 100 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0181849-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.