cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.978525.v1
title: Rdata file of all links in the summary network.

description: Different versions of the network can be created by excluding certain link types using the Evidence column, and, in reference to the node file, by collapsing node names following a biological hierarchy. The contents of each column are as follows: <strong>Resource</strong> - First node. Where applicable this is the node being consumed.<br><strong>Consumer</strong> - Second node. Where applicable this is the node consuming the resource.<br><strong>Interaction.name</strong> - Where reported this is nature of the biological process conveyed by the link.<br><strong>Evidence</strong> - The type of link, whether there is an identified process (Mechanism), an association (Pattern), or just two simultaneous nodes (Cooccurrence).<br><strong>Authors</strong> - Surname of the first author of the publication.<br><strong>Year</strong> - Year of publication.<br><strong>Journal</strong> - Name of the journal in which it was published.<br><strong>Abstract.only</strong> - Whether or not (Y or N) I had access to the full text of the publication.<br><strong>Methods</strong> - The type of research reported in the publication.<br><strong>Notes</strong> - Rough description of what the publication reported.<br><strong>Max.parasites.per.person</strong> - Most parasites reported in a person in that publication.<br><strong>Aggregated.Resource</strong> - Renamed node corresponding to the Resource column. Other forms of aggregation are possible by reference to the node file.<br><strong>Aggregated.Consumer</strong> - Renamed node corresponding to the Consumer column. Other forms of aggregation are possible by reference to the node file.<br><strong>Publication</strong> - Combination of Authors, Year, and Journal to identify each unique publication.
DOI: 10.6084/m9.figshare.978530.v1
title: Reported Effects of Coinfection

description: Rdata file of reported effects of coinfection on parasitemia and host health from 2009 publicatons.
DOI: 10.6084/m9.figshare.978530.v3
title: Rdata file of reported effects of coinfection

description: Reported effects of coinfection on parasitemia and host health from 2009 publicatons.
DOI: 10.6084/m9.figshare.978530.v2
title: Rdata file of Reported Effects of Coinfection

description: Reported effects of coinfection on parasitemia and host health from 2009 publicatons.
DOI: 10.6084/m9.figshare.978510.v2
title: PredictiveAnticipatoryActivity

description: Materials related to the experiments related to PAA and paper "CardioAlert: an Hear Rate Based Decision Support System for Improving Choices Related to Negative or Positive Future Events"
DOI: 10.6084/m9.figshare.978527.v1
title: Type and names of each node of the summary network

description: Comma delimited text file containing information about each node according to basic renaming and three levels of aggregation.
DOI: 10.6084/m9.figshare.978526.v1
title: CSV file of all links in summary network

description: Semicolon delimited text file equivalent of the Rdata file.
DOI: 10.6084/m9.figshare.978527.v3
title: CSV file of each node of the summary network

description: Comma delimited text file containing information about each node reported in surveyed publications. The contents of each column are as follows: <strong>RawNodeID</strong> - Name of the node as reported in the original publication.<br><strong>Type</strong> - Types of parasite nodes, or Resource/Immune categories of host nodes.<br><strong>RenamedNodeID</strong> - Renaming of the node e.g. to ensure up-to-date, correctly spelt species names.<br><strong>FirstAggregation</strong> - Whether or not this node name should be aggregated to the first level (see basic aggregation in our published paper).<br><strong>FirstAggregationID</strong> - The name of each node following the first level of aggregation.<br><strong>SecondAggregation</strong> - Whether or not this node name should be aggregated to the second level (called Moderate aggregation in our published paper).<br><strong>SecondAggregationID</strong> - The name of aggregated nodes following the second level of aggregation.<br><strong>ThirdAggregation</strong> - Whether or not this node name should be aggregated to the third level (called Severe aggregation in our published paper).<br><strong>ThirdAggregationID</strong> - The name of aggregated nodes following the third level of aggregation.
DOI: 10.6084/m9.figshare.978507
title: Refleksje na temat pracy A. Then

description: This review aims to explore the proper execution of the work " Use the financial health of an organization in financial planning on a example of a company engaged in the production of food" by student of the University of Economics in Wroclaw. The analysis contained in the reviewed work was based on the financial health index (called Financial Health Index) developed by John Zietlowa.
DOI: 10.6084/m9.figshare.978527.v2
title: CSV file about each node of the summary network

description: Comma delimited text file containing information about each node including their type, basic renaming, and three levels of aggregation.
DOI: 10.6084/m9.figshare.978507.v1
title: Refleksje na temat pracy A. Then

description: This review aims to explore the proper execution of the work " Use the financial health of an organization in financial planning on a example of a company engaged in the production of food" by student of the University of Economics in Wroclaw. The analysis contained in the reviewed work was based on the financial health index (called Financial Health Index) developed by John Zietlowa.
DOI: 10.6084/m9.figshare.978509.v2
title: HypnOBE

description: Materials related to the paper "Out of Body Experience induced by hypnotic suggestion. Part 1: phenomenology and perceptual characteristics" Out of Body Experience induced by hypnotic suggestion. Part 1: phenomenology and perceptual characteristics - See more at: http://journal.frontiersin.org/Journal/10.3389/fnhum.2014.00193/abstract#sthash.et2uAPCN.dpuf Out of Body Experience induced by hypnotic suggestion. Part 1: phenomenology and perceptual characteristics - See more at: http://journal.frontiersin.org/Journal/10.3389/fnhum.2014.00193/abstract#sthash.et2uAPCN.dpuf
DOI: 10.6084/m9.figshare.978501.v1
title: Gaussian Job Archive for C58H118

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.978484
title: fishlabel study - data file

description: This file contains the data from the fishlabel study conducted between march and december 2013 in France. Upon preprint publication, a full link to the paper will be provided here. This file goes with the R script written to analyse it and produce the figures 1, 2 and 3 from the paper.
DOI: 10.6084/m9.figshare.978486
title: WPressClient Source Code

description: WPressClient is an open source workload generator. The complete source code is available in this page for all researches and businesses. For more information you can contact me by amir0015@e.ntu.edu.sg.
DOI: 10.6084/m9.figshare.978502.v1
title: Gaussian Job Archive for C58H118

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.978485
title: fishlabel data, R script and sampling protocols

description: This file set contains both the data file and the R script to analyse them, from : Bénard-Capelle J, Guillonneau V, Nouvian C, Fournier N, Le Loët K, Dettai A. (2015) Fish mislabelling in France: substitution rates and retail types. PeerJ 2:e714 http://dx.doi.org/10.7717/peerj.714 After first reviews, we added the sampling instructions we gave to the collectors in their original (french) version and translated in English.
DOI: 10.6084/m9.figshare.978484.v2
title: fishlabel study - data file

description: This file contains the data from the fishlabel study conducted between march and december 2013 in France. Upon preprint publication, a full link to the paper will be provided here. This file goes with the R script written to analyse it and produce the figures 1, 2 and 3 from the paper.
DOI: 10.6084/m9.figshare.978484.v1
title: fishlabel study - data file

description: This file contains the data from the fishlabel study conducted between march and december 2013 in France. Upon preprint publication, a full link to the paper will be provided here. This file goes with the R script written to analyse it and produce the figures 1, 2 and 3 from the paper.
DOI: 10.6084/m9.figshare.978486.v1
title: WPressClient source code

description: WPressClient is an open source workload generator. The complete source code is available in this page for all researches and businesses. For more information you can contact me by amir0015@e.ntu.edu.sg.
DOI: 10.6084/m9.figshare.978485.v1
title: fishlabel

description: This file set contains both the data file and the R script to analyse them, from the fishlable study. Upon preprint publication, the full link to the article will be provided here.
DOI: 10.6084/m9.figshare.978012
title: new fileset

description: The purpose of this paper is measurement and analysis of financial health of three polish economic units such as: non-profit organization, financial institution and manufacturing company. All the information was gathered from financial statements, years 2010-2012. The paper hinges on J. Zieltow’s model, which enables us to analize precisely the financial situation of the companies, using 15 different indicators. Zietlow’s index was meant for evaluation of situation of non-profit organization and allows to make multidimensional measurement in this sector.
DOI: 10.6084/m9.figshare.978485.v2
title: fishlabel data and R script

description: This file set contains both the data file and the R script to analyse them, from the fishlabel study. Upon preprint publication, the full link to the article will be provided here.
DOI: 10.6084/m9.figshare.978012.v1
title: new fileset

description: The purpose of this paper is measurement and analysis of financial health of three polish economic units such as: non-profit organization, financial institution and manufacturing company. All the information was gathered from financial statements, years 2010-2012. The paper hinges on J. Zieltow’s model, which enables us to analize precisely the financial situation of the companies, using 15 different indicators. Zietlow’s index was meant for evaluation of situation of non-profit organization and allows to make multidimensional measurement in this sector.
DOI: 10.6084/m9.figshare.978485.v3
title: fishlabel data and R script

description: This file set contains both the data file and the R script to analyse them, from the fishlabel study. Upon preprint publication, the full link to the article will be provided here.
DOI: 10.6084/m9.figshare.978485.v4
title: fishlabel data and R script

description: This file set contains both the data file and the R script to analyse them, from the fishlabel study. Upon preprint publication, the full link to the article will be provided here.
DOI: 10.6084/m9.figshare.978004
title: Resampling Markov Chain Monte Carlo Algorithms: Basic Analysis and Empirical Comparisons

description: Sampling from complex distributions is an important but challenging topic in scientific and statistical computation. We synthesize three ideas, tempering, resampling, and Markov moving, and propose a general framework of resampling Markov chain Monte Carlo (MCMC). This framework not only accommodates various existing algorithms, including resample-move, importance resampling MCMC, and equi-energy sampling, but also leads to a generalized resample-move algorithm. We provide some basic analysis of these algorithms within the general framework, and present three simulation studies to compare these algorithms together with parallel tempering in the difficult situation where new modes emerge in the tails of previous tempering distributions. Our analysis and empirical results suggest that generalized resample-move tends to perform the best among all the algorithms studied when the Markov kernels lead to fast mixing or even locally so toward restricted distributions, whereas parallel tempering tends to perform the best when the Markov kernels lead to slow mixing, without even converging fast to restricted distributions. Moreover, importance resampling MCMC and equi-energy sampling perform similarly to each other, often worse than independence Metropolis resampling MCMC. Therefore, different algorithms seem to have advantages in different settings.
DOI: 10.6084/m9.figshare.978002
title: The Up-regulation of Carbonic Anhydrase Genes of <i>Bacillus mucilaginosus</i> under Soluble Ca<sup>2+</sup> Deficiency and the Heterologously Expressed Enzyme Promotes Calcite Dissolution

description: Molecular mechanisms and gene regulation are of interest in the area of geomicrobiology in which the interaction between microbes and minerals is studied. This paper focuses on the regulation of the expression of carbonic anhydrase (CA) genes in <i>Bacillus mucilaginosus</i> and the effects of the expression product of the <i>B. mucilaginosus</i> CA gene in <i>Escherichia coli</i> on calcite weathering. Real-time fluorescent quantitative PCR (RT-qPCR) was used to explore the relationship between CA gene expression in <i>B. mucilaginosus</i> and promotion of calcite dissolution under condition of Ca<sup>2+</sup> deficiency. The results showed that adding calcite to the medium, which lacks Ca<sup>2+</sup>, can up-regulate the expression of the bacterial CA genes to accelerate calcite dissolution for bacterial growth. CA genes from <i>B. mucilaginosus</i> were transferred into <i>E. coli</i> by cloning. We then employed crude enzyme extract from the resultant <i>E. coli</i> strain in calcite dissolution experiments. The enzyme extract promoted calcite dissolution. These findings provide direct evidence for the role of microbial CA on mineral weathering and mineral nutrition release.
DOI: 10.6084/m9.figshare.978485.v5
title: fishlabel data and R script

description: This file set contains both the data file and the R script to analyse them, from the fishlabel study. Upon preprint publication, the full link to the article will be provided here.
DOI: 10.6084/m9.figshare.978002.v2
title: The Up-regulation of Carbonic Anhydrase Genes of <i>Bacillus mucilaginosus</i> under Soluble Ca<sup>2+</sup> Deficiency and the Heterologously Expressed Enzyme Promotes Calcite Dissolution

description: Molecular mechanisms and gene regulation are of interest in the area of geomicrobiology in which the interaction between microbes and minerals is studied. This paper focuses on the regulation of the expression of carbonic anhydrase (CA) genes in <i>Bacillus mucilaginosus</i> and the effects of the expression product of the <i>B. mucilaginosus</i> CA gene in <i>Escherichia coli</i> on calcite weathering. Real-time fluorescent quantitative PCR (RT-qPCR) was used to explore the relationship between CA gene expression in <i>B. mucilaginosus</i> and promotion of calcite dissolution under condition of Ca<sup>2+</sup> deficiency. The results showed that adding calcite to the medium, which lacks Ca<sup>2+</sup>, can up-regulate the expression of the bacterial CA genes to accelerate calcite dissolution for bacterial growth. CA genes from <i>B. mucilaginosus</i> were transferred into <i>E. coli</i> by cloning. We then employed crude enzyme extract from the resultant <i>E. coli</i> strain in calcite dissolution experiments. The enzyme extract promoted calcite dissolution. These findings provide direct evidence for the role of microbial CA on mineral weathering and mineral nutrition release.
DOI: 10.6084/m9.figshare.978485.v6
title: fishlabel data and R script

description: This file set contains both the data file and the R script to analyse them, from the fishlabel study. Upon preprint publication, the full link to the article will be provided here.
DOI: 10.6084/m9.figshare.978002.v1
title: The up-regulation of carbonic anhydrase genes of <i>Bacillus mucilaginosus</i> under soluble Ca<sup>2+</sup> deficiency and the heterologously expressed enzyme promotes calcite dissolution

description: Molecular mechanisms and gene regulation are of interest in the area of geomicrobiology in which the interaction between microbes and minerals is studied. This paper focuses on the regulation of the expression of carbonic anhydrase (CA) genes in <i>Bacillus mucilaginosus</i> and the effects of the expression product of the <i>B. mucilaginosus</i> CA gene in <i>Escherichia coli</i> on calcite weathering. Real-time fluorescent quantitative PCR (RT-qPCR) was used to explore the relationship between CA gene expression in <i>B. mucilaginosus</i> and promotion of calcite dissolution under condition of Ca<sup>2+</sup> deficiency. The results showed that adding calcite to the medium, which lacks Ca<sup>2+</sup>, can up-regulate the expression of the bacterial CA genes to accelerate calcite dissolution for bacterial growth. CA genes from <i>B. mucilaginosus</i> were transferred into <i>E. coli</i> by cloning. We then employed crude enzyme extract from the resultant <i>E. coli</i> strain in calcite dissolution experiments. The enzyme extract promoted calcite dissolution. These findings provide direct evidence for the role of microbial CA on mineral weathering and mineral nutrition release.
DOI: 10.6084/m9.figshare.978004.v1
title: Resampling Markov Chain Monte Carlo Algorithms: Basic Analysis and Empirical Comparisons

description: Sampling from complex distributions is an important but challenging topic in scientific and statistical computation. We synthesize three ideas, tempering, resampling, and Markov moving, and propose a general framework of resampling Markov chain Monte Carlo (MCMC). This framework not only accommodates various existing algorithms, including resample-move, importance resampling MCMC, and equi-energy sampling, but also leads to a generalized resample-move algorithm. We provide some basic analysis of these algorithms within the general framework, and present three simulation studies to compare these algorithms together with parallel tempering in the difficult situation where new modes emerge in the tails of previous tempering distributions. Our analysis and empirical results suggest that generalized resample-move tends to perform the best among all the algorithms studied when the Markov kernels lead to fast mixing or even locally so toward restricted distributions, whereas parallel tempering tends to perform the best when the Markov kernels lead to slow mixing, without even converging fast to restricted distributions. Moreover, importance resampling MCMC and equi-energy sampling perform similarly to each other, often worse than independence Metropolis resampling MCMC. Therefore, different algorithms seem to have advantages in different settings.
DOI: 10.6084/m9.figshare.978485.v7
title: fishlabel data and R script

description: This file set contains both the data file and the R script to analyse them, from the fishlabel study. Upon preprint publication, the full link to the article will be provided here.
DOI: 10.6084/m9.figshare.978485.v8
title: fishlabel data, R script and sampling protocol

description: This file set contains both the data file and the R script to analyse them, from the fishlabel study. Upon preprint publication, the full link to the article will be provided here. After first reviews, we added the sampling instructions we gave to the collectors in its original (french) version and translated in English.
DOI: 10.6084/m9.figshare.978485.v9
title: fishlabel data, R script and sampling protocol

description: This file set contains both the data file and the R script to analyse them, from the fishlabel study. Upon preprint publication, the full link to the article will be provided here. After first reviews, we added the sampling instructions we gave to the collectors in its original (french) version and translated in English.
DOI: 10.6084/m9.figshare.978485.v10
title: fishlabel data, R script and sampling protocols

description: This file set contains both the data file and the R script to analyse them, from the fishlabel study. Upon preprint publication, the full link to the article will be provided here. After first reviews, we added the sampling instructions we gave to the collectors in its original (french) version and translated in English.
DOI: 10.6084/m9.figshare.977967
title: Urbanization bias II. An assessment of the NASA GISS urbanization adjustment method - Supplementary Information

description: Supplementary information dataset for the following article: R. Connolly and M. Connolly (2014). <em>Urbanization bias II. An assessment of the NASA GISS urbanization adjustment method</em>. Open Peer Rev. J., 31 (Clim. Sci.), ver 0.1 (non peer-reviewed draft) <strong>Abstract of article</strong> NASA GISS are currently the only group calculating global temperature estimates that explicitly adjust their weather station data for urbanization biases. In this study, their urbanization adjustment procedure was considered. A number of serious problems were found with their urbanization adjustments: 1.) The vast majority of their adjustments involved correcting for “urban cooling”, whereas urbanization bias is predominantly a warming bias. 2.) The net effect of their adjustments on their global temperature estimates was unrealistically low, particularly for recent decades, when urbanization bias is expected to have increased. 3.) When a sample of highly urbanized stations was tested, the adjustments successfully removed warming bias for the 1895-1980 period, but left the 1980s-2000s period effectively unadjusted. In an attempt to explain these unexpected problems, a critical assessment of their adjustment procedure was carried out. Several serious flaws in their procedure were identified, and recommendations to overcome these flaws were given. Overall, NASA GISS’ urbanization adjustments were found to be seriously flawed, unreliable and inadequate. Until their adjustment approach is substantially improved, their global temperature estimates should be treated with considerable caution.
DOI: 10.6084/m9.figshare.977961
title: GISS 2014 Talk : Brown Dwarfs in Nearby Young Associations

description: This talk describes the BANYAN II tool, then presents first results from the BASS survey (see links below).
DOI: 10.6084/m9.figshare.977967.v1
title: Urbanization bias II. An assessment of the NASA GISS urbanization adjustment method - Supplementary Information

description: Supplementary information dataset for the following article: R. Connolly and M. Connolly (2014). <em>Urbanization bias II. An assessment of the NASA GISS urbanization adjustment method</em>. Open Peer Rev. J., 31 (Clim. Sci.), ver 0.1 (non peer-reviewed draft)
DOI: 10.6084/m9.figshare.977961.v1
title: GISS 2014 Talk : Brown DwAarfs in Nearby Young Associations

description: This talk describes the BANYAN II tool, then presents first results from the BASS survey (see links below).
DOI: 10.6084/m9.figshare.977967.v2
title: Urbanization bias II. An assessment of the NASA GISS urbanization adjustment method - Supplementary Information

description: Supplementary information dataset for the following article: R. Connolly and M. Connolly (2014). <em>Urbanization bias II. An assessment of the NASA GISS urbanization adjustment method</em>. Open Peer Rev. J., 31 (Clim. Sci.), ver 0.1 (non peer-reviewed draft)
DOI: 10.6084/m9.figshare.977961.v3
title: GISS 2014 Talk : Brown Dwarfs in Nearby Young Associations

description: This talk describes the BANYAN II tool, then presents first results from the BASS survey (see links below).
DOI: 10.6084/m9.figshare.977935
title: „Wykorzystanie oceny zdrowia finansowego podmiotu do planowania finansowego na przykładzie organizacji pożytku publicznego działającego w charakterze fundacji”

description: This assessment relates to the work entitled "Use of the assessment of the financial health of the entity to financial planning on the example of a public benefit organization acting as a foundation." It examines its compliance with the guidelines for the design and the way to communicate the results of research transparency and aesthetics.