cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.kbgwqz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina sphyraena Linnaeus, 1758",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((14.3361 -25.1213,14.3389 -25.1504,17.9648 -25.1504,17.9648 -16.1504,11.2727 -16.1504,11.2674 -18.0072,11.5829 -18.7133,12.1645 -19.4011,13.5129 -22.0148,13.9862 -22.5966,13.9591 -24.1097,14.3361 -25.1213))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012653-250525065834625/datasets/export for details.
DOI: 10.15468/dl.mjvdg7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina sphyraena Linnaeus, 1758",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((17.8454 -33.8607,17.8905 -34.1504,17.9648 -34.1504,17.9648 -25.1504,14.3389 -25.1504,14.4725 -26.5137,15.1589 -28.0715,16.3623 -29.3594,16.8947 -30.6715,17.7447 -31.9232,17.8096 -32.2341,17.5192 -32.4186,17.3515 -32.9009,17.8454 -33.8607))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012656-250525065834625/datasets/export for details.
DOI: 10.34740/kaggle/dsv/12020764
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.y7782j
title: Occurrence Download

description: A dataset containing 548 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Lepidosperma congestum R.Br.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 548 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012657-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tz2myb
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dremomys gularis Osgood, 1932"
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012659-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qk58c9
title: Occurrence Download

description: A dataset containing 3461 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paederia foetida L.",
 "Country is Korea, Republic of"
 ]
}

 The dataset includes 3461 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012658-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qutgr2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina sphyraena Linnaeus, 1758",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((11.7957 -6.2886,12.3365 -7.1504,17.9648 -7.1504,17.9648 1.8496,9.1702 1.8496,8.9648 1.4824,8.9648 -2.2147,9.212 -2.6876,11.2887 -4.7775,11.6694 -5.4096,11.7957 -6.2886))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012660-250525065834625/datasets/export for details.
DOI: 10.15468/dl.r3bfva
title: Occurrence Download

description: A dataset containing 320 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Lespedeza capitata Michx.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 320 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012661-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wguaua
title: Occurrence Download

description: A dataset containing 128671 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Papaver dubium L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 128671 records from 1230 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012646-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.55hge3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina sphyraena Linnaeus, 1758",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((11.2741 -15.6621,11.2727 -16.1504,17.9648 -16.1504,17.9648 -7.1504,12.3365 -7.1504,12.3429 -7.1607,12.8524 -8.4392,12.5237 -8.8791,12.5024 -9.17,13.3428 -11.0863,13.2132 -11.9643,12.6132 -12.4537,12.0505 -13.2857,11.7929 -14.5817,11.546 -15.3352,11.2741 -15.6621))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012663-250525065834625/datasets/export for details.
DOI: 10.15468/dl.2qjqzk
title: Occurrence Download

description: A dataset containing 4839 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paederia foetida L.",
 "Country is Chinese Taipei"
 ]
}

 The dataset includes 4839 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012664-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5dyqts
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-899.0",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Mammillaria picta Meinsh."
 ]
}

 The dataset includes 71 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012666-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tn4zzy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina sphyraena Linnaeus, 1758",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((44.9449 -26.0614,44.9648 -26.0621,44.9648 -25.1504,43.6164 -25.1504,43.93 -25.627,44.5871 -25.7989,44.9449 -26.0614))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012665-250525065834625/datasets/export for details.
DOI: 10.15468/dl.faegeu
title: Occurrence Download

description: A dataset containing 135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Lespedeza davurica (Laxm.) Schindl.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 135 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012667-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4bq526
title: Occurrence Download

description: A dataset containing 28661 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Parthenium hysterophorus L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 28661 records from 330 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012668-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18739/a2bc3sz7n
title: Seasonal soil active layer measurements from a Circumpolar Active Layer monitoring (CALM) grid, (U7a) Betty Pingo, Alaska.

description: This site is registered with the Circumpolar Active Layer Monitoring (CALM) program. It is one among a network of sites that represent a coordinated effort to standardize the collection and access to thaw measurements in representative undisturbed permafrost landscapes. This dataset contains long-term spatial thaw depth observations using mechanical probing on dates indicated by file column headers. To ensure relative consistency within the record, end-of-season measurement dates are within the same Julian calendar week during the height of the thaw season (mid-August to mid-September). It is important to note that the date of maximum annual thaw, interpreted as the active layer thickness, can vary from year to year and between sites.
DOI: 10.6084/m9.figshare.28952606.v38
title: Logic innovation NEW

description: Logic innovation
DOI: 10.15468/dl.evhmfg
title: Occurrence Download

description: A dataset containing 308 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Mongolia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Juniperus communis"
 ]
}

 The dataset includes 308 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003503-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.9w0vt4bm7
title: Affected cell types for hundreds of Mendelian diseases revealed by analysis of human and mouse single-cell data

description: Hereditary diseases manifest clinically in certain tissues, however their
 affected cell types typically remain elusive. Single-cell expression
 studies showed that overexpression of disease-associated genes may point
 to the affected cell types. Here, we developed a method that infers
 disease-affected cell types from the preferential expression of
 disease-associated genes in cell types (PrEDiCT). We applied PrEDiCT to
 single-cell expression data of six human tissues, to infer the cell types
 affected in 1,459 hereditary diseases. Overall, we identified 114 cell
 types affected by 1,140 diseases. We corroborated our findings by
 literature text-mining and recapitulation in mouse corresponding tissues.
 Based on these findings, we explored features of disease-affected cell
 types and cell classes, highlighted cell types affected by mitochondrial
 diseases and heritable cancers, and identified diseases that perturb
 intercellular communication. This study expands our understanding of
 disease mechanisms and cellular vulnerability.
description: # Title of Dataset: Affected cell types for hundreds of Mendelian diseases
 revealed by analysis of human and mouse single-cell data This README file
 was generated on January 26, 2024 by Idan Hekselman. [Access this dataset
 on
 Dryad]([doi:10.5061/dryad.9w0vt4bm7]\(https://doi.org/10.5061/dryad.9w0vt4bm7\)) This dataset accompanies this [GitHub repository](https://github.com/hekselman/PrEDiCT), which includes codes to redo analyses applied in [Hekselman et al. 2024](https://doi.org/10.7554/eLife.84613). The dataset includes files, each of which is a Seurat object in R. Object name indicates the name of the tissue (bone marrow, lung, skeletal muscle, spleen, trachea, and tongue) and the species it includes (Human is not mentioned, and mouse is mentioned). For further information on data and relevant codes, please refer to [Hekselman et al. 2022](https://github.com/hekselman/PrEDiCT) . ## Sharing/Access information Links to other publicly accessible locations of the data: \- \- Data was derived from the following sources: \- [The Tabula Sapiens Consortium](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE201333) \- [Tabula Muris Consortium](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE109774) \- [ODiseA](https://netbio.bgu.ac.il/odisea/)
DOI: 10.15468/dl.pgpkh3
title: Occurrence Download

description: A dataset containing 1145 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tagiades gana"
 ]
}

 The dataset includes 1145 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003508-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.573n5tbcg
title: Data from: Legacy effects in temporally-separated tadpole species are not mediated by invasive Western Mosquitofish (Gambusia affinis)

description: Temporally separated species are often thought to have limited competition
 over a shared resource. However, early arriving species may consume a
 limited resource such that later arriving species have access to fewer
 resources and thus experience competitive effects, even if they are
 temporally separated (i.e., they experience legacy effects from the early
 species). The presence of a predator might affect potential legacy effects
 by influencing the behavior or survivorship of the early species. Using a
 mesocosm experiment, I examined whether the presence of non-native Western
 Mosquitofish (Gambusia affinis) mediated legacy effects in the interaction
 of two temporally separated species of tadpoles, early arriving American
 Toads (Anaxyrus americanus) and late arriving Bullfrogs (Rana
 catesbeiana). Anaxyrus americanus tadpoles reduced R. catesbeiana tadpole
 growth despite all A. americanus tadpoles metamorphosing 8 d before the
 introduction of R. catesbeiana tadpoles into the mesocosms (i.e., legacy
 effects).  Gambusia affinis had limited effects on A. americanus
 (1 d delay in metamorphosis but no effect on survivorship or size at
 metamorphosis) and positive effects on R. catesbeiana (increased growth).
 There were no significant interactions between the A. americanus tadpole
 density and G. affinis treatments. In conclusion, I found evidence of
 significant legacy effects of A. americanus tadpoles on R. catesbeiana
 tadpoles, but no evidence that G. affinis mediated the legacy effects.
description: Data were collected from a mesocosm experiment. Some of the data
 are means of all individuals in a mesocosm. No other processing has
 occurred.
description: The data are in a comma separated values format and so should be
 openable by any software that can use such files.
DOI: 10.15468/dl.hmv42t
title: Occurrence Download

description: A dataset containing 604 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cirrochroa aoris"
 ]
}

 The dataset includes 604 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003507-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.wh70rxwsh
title: Conditional indirect genetic effects of caregivers on brood in the clonal raider ant

description: Caregivers shape the rearing environment of their young. Consequently,
 offspring traits are influenced by the genes of their caregivers via
 indirect genetic effects (IGEs). However, the extent to which IGEs are
 modulated by environmental factors, other than the genotype of social
 partners (i.e., intergenomic epistasis), remains an open question. Here we
 investigate how broods are influenced by the genotype of their caregivers
 in the clonal raider ant, Ooceraea biroi, a species in which the genotype,
 age, and number of both caregivers and brood can be experimentally
 controlled. First, we used four clonal lines to establish colonies that
 differed only in the genotype of caregivers and measured effects on
 foraging activity, as well as IGEs on brood phenotypes. In a second
 experiment, we tested whether these IGEs are conditional on the age and
 number of caregivers. We found that caregiver genotype affected the
 feeding and foraging activity of colonies, and influenced the rate of
 development, survival, body size, and caste fate of brood. Caregiver
 genotype interacted with other factors to influence the rate of
 development and survival of brood, demonstrating that IGEs can be
 conditional. Thus, we provide an empirical example of phenotypes being
 influenced by IGE-by-environment interactions beyond intergenomic
 epistasis, highlighting that IGEs of caregivers/parents are alterable by
 factors other than their brood’s/offspring’s genotype.
description: Please see the accompanying published article: Piekarski PK,
 Valdés-Rodríguez S, and Kronauer DJC. 2022. Conditional indirect genetic
 effects of caregivers on brood in the clonal raider ant.
 <em>Behavioral Ecology</em>.
description: R 4.1.2 (or higher), Excel Notepad++ or
 PyCharm 2019.3.1 (or higher)
DOI: 10.5061/dryad.bnzs7h4gb
title: Data for: Emergent coexistence in multispecies microbial communities

description: Understanding the mechanisms that maintain microbial biodiversity is a
 critical aspiration in ecology. Past work on microbial coexistence has
 largely focused on species pairs, but it is unclear whether pairwise
 coexistence in isolation is required for coexistence in a multispecies
 community. To address this question, we conducted hundreds of pairwise
 competition experiments among the stably coexisting members of 12
 different enrichment communities in vitro. To determine the outcomes of
 these experiments, we developed an automated image analysis pipeline to
 quantify species abundances. We found that competitive exclusion was the
 most common outcome, and it was strongly hierarchical and transitive.
 Because many species that coexist within a stable multispecies community
 fail to coexist in pairwise co-culture under identical conditions, we
 concluded that multispecies coexistence is an emergent phenomenon. This
 work highlights the importance of community context for understanding the
 origins of coexistence in complex ecosystems.
DOI: 10.5061/dryad.ghx3ffbt9
title: Hyper-cryptic radiation of a tropical montane plant lineage

description: Species are seen as the fundamental unit of biotic diversity, and thus
 their delimitation is crucial for defining measures for diversity
 assessments and studying evolution. Differences between species have
 traditionally been associated with variation in morphology. And yet, the
 discovery of cryptic diversity suggests that the evolution of distinct
 lineages does not necessarily involve trait differences. Here, we analyze
 1,684,987 variant sites and over 4000 genes for more than 400 samples to
 show how a tropical montane plant lineage (Geonoma undata species complex)
 is composed of numerous unrecognized genetic groups that are not
 morphologically distinct. We find that 11 to 14 clades do not correspond
 to the three currently recognized species. Most clades are genetically
 independent and geographic distance and topography are the most important
 factors determining this genetic divergence. This lineage does not match
 the model of an adaptive radiation, but instead, constitutes the first
 example of a hyper-cryptic plant radiation in tropical mountains.