cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11857836.v1
title: Accessory gene content of a) Phage derived regions of the main A. nasoniae chromosome b) Extrachromosomal elements

description: Accessory gene content of a) Phage derived regions of the main A. nasoniae chromosome b) Extrachromosomal elements<br>a) Phage derived regions of main chromosome. ORFs identified as accessory (i.e. not core to phage function) through either identity on BLAST search, or presence of pfam domains.Column A: phage derived region identifierColumn B: CDS or tRNAColumn C: ORF start positionColumn D: ORF end positionColumn E: ORF length in nucleotidesColumn F: Coding strandColumn G: Locus tag IDColumn H: Gene product, by BLAST matchColumn I: pfam domain IDsColumn J: Notes on functional groupsColumn K: pfam domain function<br>b) Extrachromosomal elements. ORFs identified as accessory (i.e. not core to plasmid function) through either identity on BLAST search, or presence of pFam domains.<br>Column A: plasmid identifierColumn B: CDS or tRNAColumn C: ORF start positionColumn D: ORF end positionColumn E: ORF length in nucleotidesColumn F: Coding strandColumn G: Locus tag IDColumn H: Gene product, by BLAST matchColumn I: pfam domain IDsColumn J: Notes on functional groupsColumn K: pfam domain function
DOI: 10.6084/m9.figshare.11845134
title: Predicted A. nasoniae phage regions on the main chromosome, as estimated by PHASTER

description: Predicted regions of phage origin on the <i>A.nasoniae</i> main chromosome as estimated by PHASTER (Arndt et al 2016). <br>Column 1: Region identifierColumn 2: Length of region, kbColumn 3: PHASTER estimate of completeness (score)Column 4: Position on chromosomeColumn 5: Estimated # of protein coding ORFs in regionColumn 6: Estimated # of ORFs encoding core phage proteinsColumn 7: Estimated # of proteins classed as Hypothetical functionColumn 8: Estimated # of proteins classed as bacterial in origin (rather than phage core).Column 9: Presence/Absence of an attachment siteColumn 10: Identity of 3' Flanking ORFColumn 11: Identity of 5' Flanking ORFColumn 12: Number of nanopore long reads covering phage regionColumn 13: Length of longest read covering phage region.<br>Arndt D, Grant JR, Marcu A, Sajed T, Pon A, Liang Y, Wishart DS. 2016. PHASTER: a better, faster version of the PHAST phage search tool. Nucleic Acids Res 44:W16–W21.<br>
DOI: 10.6084/m9.figshare.11845197.v1
title: Catalogue of predicted plasmid elements in the A. nasoniae genome

description: Plasmid diversity and constitution of <i>A. nasoniae</i>.Column 1: Plasmid identifierColumn 2: Length of plasmidColumn 3: Prophage content of plasmid, estimated by PHASTER (Arndt et al 2016)Column 4: Coverage of the plasmid,normalised to main chromosome of A.nasoniaeColumn 5: GC contentColumn 6: Number of predicted addiction system genes on plasmidColumn 7: Predicted Plasmid regulatory elements presentColumn 8: Notes<br>Arndt D, Grant JR, Marcu A, Sajed T, Pon A, Liang Y, Wishart DS. 2016. PHASTER: a better, faster version of the PHAST phage search tool. Nucleic Acids Res 44:W16–W21.<br>
DOI: 10.6084/m9.figshare.11845197
title: Catalogue of predicted plasmid elements in the A. nasoniae genome

description: Plasmid diversity and constitution of <i>A. nasoniae</i>.Column 1: Plasmid identifierColumn 2: Length of plasmidColumn 3: Prophage content of plasmid, estimated by PHASTER (Arndt et al 2016)Column 4: Coverage of the plasmid,normalised to main chromosome of A.nasoniaeColumn 5: GC contentColumn 6: Number of predicted addiction system genes on plasmidColumn 7: Predicted Plasmid regulatory elements presentColumn 8: Notes<br>Arndt D, Grant JR, Marcu A, Sajed T, Pon A, Liang Y, Wishart DS. 2016. PHASTER: a better, faster version of the PHAST phage search tool. Nucleic Acids Res 44:W16–W21.<br>
DOI: 10.6084/m9.figshare.19536163
title: Escherichia coli pathogenicity GWAS: input genome sequences (annotations

description: Input genomes for a GWAS study on Escherichia coli intrinsic pathogenicity (annotations generated with prokka)
DOI: 10.34740/kaggle/dsv/3421657
title: UNET Lung Segmentation Weights for Chest X Rays
DOI: 10.6084/m9.figshare.19536262
title: Supplementary Material for: Renal Replacement Therapy for Patients Requiring Extracorporeal Membrane Oxygenation: A Multicenter International Survey

description: <b><i>Introduction:</i></b> Patients receiving extracorporeal membrane oxygenation (ECMO) often require renal replacement therapy (RRT). The challenge of inserting a dialysis catheter (DC) could be solved by direct connection of RRT lines on an ECMO circuit (DCRE) without published guidelines. This study aimed to describe the practice of RRT in patients on ECMO, including the DCRE as well as the perception and concerns related to this technique. <b><i>Methods:</i></b> An international survey was worldwide sent via email to professionals involved in the management of ECMO. Respondents always or often performing RRT via the ECMO circuit were classified in the ECMO group, and those using a DC were classified in the DC group. <b><i>Results:</i></b> From March 2019 to October 2019, 298 participants answered the questionnaire from 46 different countries. Only 28% were working in pediatric departments. Among the 165 participants commonly performing RRT in patients on ECMO, 100 (61%) performed mainly RRT via the ECMO circuit, and 65 (39%) performed RRT via DC. Pediatric practice and a longer experience were the only noticeable characteristics of the ECMO group. The most reported concern regarding DCRE was the risk of air embolism (<i>n</i> = 84, 28%), but the most encountered problem was unmanageable pressure alarms in RRT devices. <b><i>Conclusion:</i></b> The present study showed significant heterogeneity in RRT practices in patients on ECMO. The lower experience of the DC group, the high rates of concerns toward DCRE, and pressure alarm issues suggested that protocols and training may overcome reluctance and technical difficulties.
DOI: 10.6084/m9.figshare.18530531
title: Profiling of endogenous DNA double-strand breaks during neural cell fate determination using sBLISS.

description: Abstract: Naturally occurring endogenous DNA double-strand breaks (DSBs) have been detected in neuronal cells and implicated in the pathogenesis of neurodevelopmental disorders (NDDs). Here, we describe a genome-wide atlas of endogenous DSBs mapped by suspension Breaks Labeling In Situ and Sequencing (sBLISS) in proliferating neuroepithelial stem (NES) cells in culture, neural progenitor cells (NPC) after 6 days of NES differentiation towards neurons, and post-mitotic neurons (NEU) after 35 days of differentiation. Genome-wide DSB maps were highly reproducible between biological replicates of the same cell type, at multiple resolutions down to 10 kilobases (kb). To validate our datasets, we examined the distribution of DSBs in different genomic regions, demonstrating that endogenous DSBs are enriched around transcriptionally active promoters and chromatin loop anchors mapped by high-throughput chromosome conformation capture (Hi-C), in line with previous findings in different cell types. Lastly, we assessed DSBs in the promoter region and along the gene body of NDD risk genes, demonstrating that these genes have a significantly higher burden of DSBs compared to all other genes in all the three cell types examined, confirming prior observations using different DSB-detection strategies. Our datasets represent a valuable resource for exploring genome fragility during neural cell fate determination and assessing its contribution to the pathogenesis of neurodevelopmental disorders. <br> Data: This repository contains processed data files from sBLISS performed on three different stages of neuronal differentiation (2 replicates each). Raw data is available at https://www.ncbi.nlm.nih.gov/bioproject/PRJNA798046
DOI: 10.25824/redu/ems1vz
title: Auditoria de prontuários.xlsx
DOI: 10.25824/redu/uwnwez
title: 2 rodada.xlsx
DOI: 10.25824/redu/hp4ewu
title: 1ª rodada técnica delphi.xlsx
DOI: 10.25824/redu/ptapua
title: Replication data for content validation of an instrument for clinical records

description: Data from content validity (DELPHI I, DELPHI II) Data from clinical audit
DOI: 10.14279/depositonce-11893
title: Integrale und spektrale Eigenschaften transmittierender und reflektierender Materialien

description: This research data were retracted on 07 April 2022.
description: Diese Daten wurden am 07. April 2022 zurückgezogen.
description: Integrale und spektrale Reflexions- und Transmissionsdaten typsicher Oberflächen (gestrichene Wandfarben, Sichtbeton, Backstein und Holz)
DOI: 10.6084/m9.figshare.19430555
title: Data_Typography_Experiments

description: Data from a respnse latency experiment, a tachistoscope experiment, a microgenesis experiment, and a product associations experiment
DOI: 10.6084/m9.figshare.19430555.v1
title: Data_Typography_Experiments

description: Data from a respnse latency experiment, a tachistoscope experiment, a microgenesis experiment, and a product associations experiment
DOI: 10.18112/openneuro.ds004091.v1.1.0
title: GAZE PRF
DOI: 10.34740/kaggle/dsv/3421817
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.5281/zenodo.6421316
title: Erythroxylum macrophyllum decontaminated FSCR

description: .
DOI: 10.5281/zenodo.6421315
title: Erythroxylum macrophyllum decontaminated FSCR

description: .
DOI: 10.5281/zenodo.6421321
title: Genidens machadoi decontaminated FSCR

description: .
DOI: 10.5281/zenodo.6421320
title: Genidens machadoi decontaminated FSCR

description: .
DOI: 10.5281/zenodo.6421363
title: The Role of Community Advisory in The Implementation of Social Reintegration for Ex-Offender

description: Social Reintegration is one of the correctional efforts to overcome the overcrowding in many State Detention Centers, Prisons, and Special Development Institutions for Children throughout Indonesia. In Indonesia, the rate of repeat crimes is still very volatile. In 1994-1996, the recidivist rate reached 5.61% and increased to 6.63% in 1997-1999. In 2000 this number decreased by 5.27%, then in 2001, the decrease reached 2.84%. In 2018 it increased to reach 14%. The research focuses on Community Guidance's role in Social Reintegration and examines the extent of the factors that can hinder Social Reintervention's success. This study applies primary data collection and secondary data using qualitative research methods. With this research, we can get a real picture of Community Guidance's role, which is implemented in the implementation of Social Reintegration, so that the results can be maximized. The success of Social Reinterpretation will reduce the number of correctional recidivists in the future. This approach is expected to encourage the overcrowded prevention program's success in the State Prisons and State Houses.
DOI: 10.5281/zenodo.6396666
title: The Role of Community Advisory in The Implementation of Social Reintegration for Ex-Offender

description: Social Reintegration is one of the correctional efforts to overcome the overcrowding in many State Detention Centers, Prisons, and Special Development Institutions for Children throughout Indonesia. In Indonesia, the rate of repeat crimes is still very volatile. In 1994-1996, the recidivist rate reached 5.61% and increased to 6.63% in 1997-1999. In 2000 this number decreased by 5.27%, then in 2001, the decrease reached 2.84%. In 2018 it increased to reach 14%. The research focuses on Community Guidance's role in Social Reintegration and examines the extent of the factors that can hinder Social Reintervention's success. This study applies primary data collection and secondary data using qualitative research methods. With this research, we can get a real picture of Community Guidance's role, which is implemented in the implementation of Social Reintegration, so that the results can be maximized. The success of Social Reinterpretation will reduce the number of correctional recidivists in the future. This approach is expected to encourage the overcrowded prevention program's success in the State Prisons and State Houses.
DOI: 10.5281/zenodo.6421371
title: PC Componentes gráficas precios

description: This is a dataset extracted using beautifulSoap library from: "https://www.pccomponentes.com/tarjetas-graficas". It has 5 fields: name, gb, gddr, price (in euros) and the url of the product.
DOI: 10.5281/zenodo.6421370
title: PC Componentes gráficas precios

description: This is a dataset extracted using beautifulSoap library from: "https://www.pccomponentes.com/tarjetas-graficas". It has 5 fields: name, gb, gddr, price (in euros) and the url of the product.
DOI: 10.25345/c55h7bx9g
title: MassIVE MSV000089211 - .raw and .mzXML files of lipidomics analysis of pooled human faeces samples
title: Thermo .raw and centroided .mzXML files of a lipidomics LC-MS analyses ran on a Thermo Q-exactive instrument. Pooled sampled were extracted using our regular lipid extraction protocol and with an adapted protocol for lipid extraction on the rest fraction after polar extraction, both performed six-fold.
DOI: 10.5255/ukda-sn-855577
title: Interviews with UK Global Challenges Researchers and Overseas Collaborators on Embedding Mental Health Impact in Their Work Across Sustainable Development Goals, 2020-2021

description: 26 online interviews were conducted of which 22 are available in this archive. One female UK interviewee did not audio-record clearly enough for accurate transcription; and one female UK interviewee and two non-UK interviewees - one man, one woman - gave consent for analysis in the orginal project but not for making their anonymised transcript more widely available. UK Sample Gender: 3 men, 11 women (2 women interviewed together) GCRF Strategic Portfolio Theme: 1 Education, 7 Health, 1 Cities, 2 Security, 1 Food, 1 Environment Research Council: 3 AHRC, 1 BBSRC, 1 EPSRC, 2 ESRC, 3 MRC, 3 NERC, 0 STFC World Region (Some sampled projects covered more than one region): 5 Africa, 4 Americas, 2 SE Asia, 1 Europe, 1 Eastern Mediterranean, 4 Western Pacific, 2 Global Non-UK Sample Gender: 4 men, 9 women GCRF Strategic Portfolio Theme: 3 Education, 7 Health, 0 Cities, 1 Security, 2 Food, 0 Environment Research Council: 2 AHRC, 1 BBSRC, 2 EPSRC, 2 ESRC, 3 MRC, 1 NERC, 0 STFC, 2 Not Applicable World Region (Some sampled projects covered more than one region): 2 Africa, 3 Americas, 3 SE Asia, 1 Europe, 1 Eastern Mediterranean, 3 Western Pacific, 1 Global
DOI: 10.5281/zenodo.6421140
title: EZ publication: source code, profiling, analysis and simulation data

description: Data of the PIConGPU simulations as used in the publication: EZ: An Efficient, Charge Conserving Current Deposition Algorithm for Electromagnetic Particle-In-Cell Simulations Data overview: picongpu_source.zip: source code forked from the PIConGPU mainline version 0.7.0-dev used input set `share/picongpu/examples/PaperThermal` runs_charge_conservation.zip: output including hdf5 dumps to validate charge conservation property for the PaperThermal setup (warm plasma) runs_performance.zip: simulation timings output for Spock CPU, Spock GPU and Summit GPU runs runs_profiling.zip: profile data for Spock GPU and Summit GPU runs runs_singleParticleTest.zip: output including hdf5 dumps to validate charge conservation property for the single particle test analysis_scripts.zip: jupyter notebooks for setup and analysis of PaperThermal setup python script to plot charge conservation from hdf5 simulation output over time bash script for statistical analysis of performance runs
DOI: 10.5255/ukda-sn-855045
title: Imprinting Methylation and Cognition, 2015-2020

description: Human cognition is an important determinant of educational and occupational success, social mobility, health, and longevity though it is not clear whether higher cognitive ability leads to better health and longevity through improved lifestyle choices and life opportunities or whether there is a common biological basis to a well-functioning brain and body. Cognitive ability is influenced both by genetics and the environment and epigenetic states are relevant to both. A particular class of epigenetics (imprinting) is known to be important for neurogenesis, brain function and behaviour. Epigenetic imprints are generally established in early life, they are often stable over time, and they can persist in a wide range of cell types many divisions and decades later. These characteristics make imprints particularly amenable to study in longitudinal cohort designs where only blood samples may be available. This study investigates the link between epigenetic imprinting and measures of cognitive function at age 11 and in adulthood using data from a well-characterised cohort born in 1936 and recruited at 64 years of age. We studied the average methylation in selected regions of imprints (H19, IGF2, SNRPN, PEG3, MEST1, NESPAS, KvDMR, IG-DMR and ZAC1) by pyrosequencing in DNA extracted from blood samples. The data consist of average percent methylation in selected regions of imprints (H19, IGF2, SNRPN, PEG3, MEST1, NESPAS, KvDMR, IG-DMR and ZAC1) measured by pyrosequencing in DNA extracted from blood samples. Measures of cognitive function are; MATSCO (Childhood Moray House Test Score); NART (National Adult Reading Test Score); RAVN (Raven’s Progressive Matrices).
DOI: 10.5281/zenodo.6408609
title: EWINA_IPATHS : a global database of earthworm introductions' pathways into the US from 1945 to 1975

description: <strong>This dataset centralizes data of earthworm interception events at the US borders between 1945 and 1975.</strong> These data come from the U.S. Bureau of Plant Quarantine, U.S. Department of Agriculture and were compiled by E. Gates in a list of papers (see references). Each record in the EWINA_IPATHS database relates an interception event of introduced earthworms. Interception events are described by the name of the intercepted species, its abundance, the date and place of interception, the geographical point of origin, the transportation mode (boat, plane, car), and the substrate in which the earthworms were found (e.g. soil, leaves, fish bait). EWINA_IPATHS contains 1 016 events of earthworm interceptions. Files: <strong>EWINAPATH.csv </strong>: dataset itself <strong>EWINAPATH_references.csv</strong> : list of references where the data come from. Merge to EWINAPATH.csv with the field source_ID. <strong>EWINAPATH_variables.csv</strong>: list of variables and their meaning.
DOI: 10.5281/zenodo.6408608
title: EWINA_IPATHS : a global database of earthworm introductions' pathways into the US from 1945 to 1975

description: <strong>This dataset centralizes data of earthworm interception events at the US borders between 1945 and 1975.</strong> These data come from the U.S. Bureau of Plant Quarantine, U.S. Department of Agriculture and were compiled by E. Gates in a list of papers (see references). Each record in the EWINA_IPATHS database relates an interception event of introduced earthworms. Interception events are described by the name of the intercepted species, its abundance, the date and place of interception, the geographical point of origin, the transportation mode (boat, plane, car), and the substrate in which the earthworms were found (e.g. soil, leaves, fish bait). EWINA_IPATHS contains 1 016 events of earthworm interceptions. Files: <strong>EWINAPATH.csv </strong>: dataset itself <strong>EWINAPATH_references.csv</strong> : list of references where the data come from. Merge to EWINAPATH.csv with the field source_ID. <strong>EWINAPATH_variables.csv</strong>: list of variables and their meaning.
DOI: 10.5281/zenodo.6421139
title: EZ publication: source code, profiling, analysis and simulation data

description: Data of the PIConGPU simulations as used in the publication: EZ: An Efficient, Charge Conserving Current Deposition Algorithm for Electromagnetic Particle-In-Cell Simulations Data overview: picongpu_source.zip: source code forked from the PIConGPU mainline version 0.7.0-dev used input set `share/picongpu/examples/PaperThermal` runs_charge_conservation.zip: output including hdf5 dumps to validate charge conservation property for the PaperThermal setup (warm plasma) runs_performance.zip: simulation timings output for Spock CPU, Spock GPU and Summit GPU runs runs_profiling.zip: profile data for Spock GPU and Summit GPU runs runs_singleParticleTest.zip: output including hdf5 dumps to validate charge conservation property for the single particle test analysis_scripts.zip: jupyter notebooks for setup and analysis of PaperThermal setup python script to plot charge conservation from hdf5 simulation output over time bash script for statistical analysis of performance runs
DOI: 10.5281/zenodo.6421353
title: Haliastur sphenurus decontaminated FSCR

description: .
DOI: 10.5281/zenodo.6421352
title: Haliastur sphenurus decontaminated FSCR

description: .
DOI: 10.5285/1782a24b8eb7444ea72b7058c56bef0f
title: Radar data from Chilbolton Triple Wavelength Experiment

description: Radar data collected in ice-phase clouds at the Chilbolton Observatory using radars at 3, 35 and 94 GHz during 2014-2015. The experimental setup is described in Stein et al (2015) DOI: 10.1002/2014GL062170 - see related documents section on this record. Raw pulse-to-pulse data were collected from all 3 radars, and have been post processed to common, synchronised time bins, for maximum ease of colocation. These data were produced as part of the NERC funded Exploiting multi-wavelength radar Doppler spectra to characterise the microphysics of ice hydrometeors project (grant reference: NE/K012444/1).
DOI: 10.5281/zenodo.4686619
title: Raw lab data for COPOL II study of persistent organic pollutants in Kongsfjorden, Svalbard

description: This dataset contains raw data files as they were received from the analysing laboratory NILU: 136 Excel XLSX documents, grouped in three folders<br> * PCB (polychlorinated biphenyls)<br> * DDT (dichlorodiphenyltrichloroethanes) and HCH (hexachlorocyclohexanes)<br> * Pesticide (hexachlorobenzene and chlordane pesticides) All samples were collected in Kongsfjorden in June 2012.
description: For a quality controlled and machine parsable version of the same data, please visit https://github.com/MaeveMcGovern/KongsPOPs
DOI: 10.5281/zenodo.4686618
title: Raw lab data for COPOL II study of persistent organic pollutants in Kongsfjorden, Svalbard

description: This dataset contains raw data files as they were received from the analysing laboratory NILU: 136 Excel XLSX documents, grouped in three folders<br> * PCB (polychlorinated biphenyls)<br> * DDT (dichlorodiphenyltrichloroethanes) and HCH (hexachlorocyclohexanes)<br> * Pesticide (hexachlorobenzene and chlordane pesticides) All samples were collected in Kongsfjorden in June 2012.
description: For a quality controlled and machine parsable version of the same data, please visit https://github.com/MaeveMcGovern/KongsPOPs
DOI: 10.14469/hpc/10344
title: C2N2 triplet, uCCSD(T)/Def2TZVPP, 5+5, E = -185.114461, G = -185.128572

description: Gaussian 16 (C01) calculation