cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3598610_d4
title: Additional file 2: of Expansion of the phosphatidylethanolamine binding protein family in legumes: a case study of Lupinus angustifolius L. FLOWERING LOCUS T homologs, LanFTc1 and LanFTc2

description: Centimorgan positions and alignment statistics for L. angustifolius genome scaffolds anchored to the updated reference linkage map (groups NLL-10 and NLL-17). (XLS 49 kb)
DOI: 10.6084/m9.figshare.c.3601184_d1
title: MOESM4 of What is the impact of active management on biodiversity in boreal and temperate forests set aside for conservation or restoration? A systematic map

description: Additional file 4. Systematic map database (descriptions of included studies).
DOI: 10.6084/m9.figshare.c.3601184_d3
title: MOESM5 of What is the impact of active management on biodiversity in boreal and temperate forests set aside for conservation or restoration? A systematic map

description: Additional file 5. Articles excluded based on full-text screening.
DOI: 10.6084/m9.figshare.c.3601184_d5
title: MOESM2 of What is the impact of active management on biodiversity in boreal and temperate forests set aside for conservation or restoration? A systematic map

description: Additional file 2. Literature searches.
DOI: 10.6084/m9.figshare.c.3601787_d1
title: Additional file 1: of Metabolites involved in cellular communication among human cumulus-oocyte-complex and sperm during in vitro fertilization

description: Table S1. Analysis of gene expression in human oocytes related with PHS and LPC synthesis (XLS 10 kb)
DOI: 10.6084/m9.figshare.c.3602033_d2
title: Additional file 2: Table S1. of Improved transcription and translation with L-leucine stimulation of mTORC1 in Roberts syndrome

description: Summary table of Babel analysis. Table S2. GO term analysis of genes that show improved translational efficiency in RBS cells with L-leucine. Table S3. List for genes with fold change in translational efficiency greater than two and a total number of reads over 20 counts at 3 h. Table S4. List for genes with fold change in translational efficiency greater than two and a total number of reads over 20 counts at 24 h. Table S5. GO term analysis for genes with the new motif. Table S6. List of genes that have the new motif. Table S7. Summary table of data in boxplot of mTORC2-regulated gene show transcription and translation in Figure S5. Table S8. Summary table of data in heatmap for 868 mitochondrial genesâ  expression (Fig. 3) and translation. Table S9. GO term analysis for mitochondrial genes that show improve transcription with L-leucine. Table S10. GO term analysis for mitochondrial genes that improve translation with L-leucine. Table S11. Summary table of data in boxplot of snoRNAs expression in Fig. 4. Table S12. GO term analysis of differentially expressed genes in RBS cells. Table S13. List of genes in NADs and their expression, from Fig. 6. (ZIP 1.78 MB)
DOI: 10.6084/m9.figshare.c.3603836_d3
title: Additional file 4: Table S4. of Discovery and profiling of small RNAs responsive to stress conditions in the plant pathogen Pectobacterium atrosepticum

description: Combined list of predicted sRNA using SIPHT and RITs from WebGester DB. S3A: Matches of in silico predictions with SIPHT (forward strand) S3B: Matches of in silico predictions with SIPHT (complementary strand) (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3605024_d1
title: Additional file 3: of The effectiveness of a mobile application for the development of palpation and ultrasound imaging skills to supplement the traditional learning of physiotherapy students

description: Database. (XLSX 14.6 kb)
DOI: 10.6084/m9.figshare.c.3606884_d1
title: Additional file 8: of Low genetic diversity despite multiple introductions of the invasive plant species Impatiens glandulifera in Europe

description: Studies comparing genetic diversity in native and introduced ranges of invasive species.
DOI: 10.6084/m9.figshare.c.3610025_d2
title: Additional file 6: Table S5. of The structure and diversity of human, animal and environmental resistomes

description: Metadata for samples collected from Human Microbiome Project (HMP) repository. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.c.3610436_d2
title: Additional file 3: of How effective are on-farm mitigation measures for delivering an improved water environment? A systematic map

description: Access database of coded review evidence searchable by category.
DOI: 10.6084/m9.figshare.c.3610436_d3
title: Additional file 1: of How effective are on-farm mitigation measures for delivering an improved water environment? A systematic map

description: Spread sheet containing the exact search terms used.
DOI: 10.25832/national_generation_capacity/2019-12-02
title: National generation capacity
title: Aggregated generation capacity by technology and country

description: Aggregated generation capacity by technology and country. This data package comprises technology-specific aggregated generation capacities for European countries. The generation capacities are consistently categorized based on fuel and technology. For each European country, various references are used ranging from international (e.g. ENTSOE or EUROSTAT) to national sources from e.g. regulatory authorities. The input data is processed in the script linked below.
DOI: 10.6084/m9.figshare.c.3611495_d2
title: MOESM2 of Chinaâ  s conversion of cropland to forest program: a systematic review of the environmental and socioeconomic effects

description: Additional file 2: Full bibliographies and data extraction of included studies.
DOI: 10.25832/when2heat/2019-08-06
title: When2Heat Heating Profiles

description: This dataset comprises national time series for representing building heat pumps in power system models. The heat demand of buildings and the coefficient of performance (COP) of heat pumps is calculated for 16 European countries from 2008 to 2018 in an hourly resolution. Heat demand time series for space and water heating are computed by combining gas standard load profiles with spatial temperature and wind speed reanalysis data as well as population geodata. The profiles are year-wise scaled to 1 TWh each. For the years 2008 to 2013, the data is additionally scaled with annual statistics on the final energy consumption for heating. COP time series for different heat sources – air, ground, and groundwater – and different heat sinks – floor heating, radiators, and water heating – are calculated based on COP and heating curves using reanalysis temperature data, spatially aggregated with respect to the heat demand, and corrected based on field measurements. All data processing as well as the download of relevant input data is conducted in python and pandas and has been documented in the Jupyter notebooks linked below.
DOI: 10.6084/m9.figshare.c.3612119_d5
title: Additional file 4: Table S4. of Transcriptomic analysis of mouse liver reveals a potential hepato-enteric pathogenic mechanism in acute Toxoplasma gondii infection

description: Differentially expressed cellular components. (XLSX 25Â kb)
DOI: 10.15468/zjeq4c
title: A new genus and species of pigeon (Aves, Columbidae) from the Kingdom of Tonga, with an evaluation of hindlimb osteology of columbids from Oceania

description: This dataset contains the digitized treatments in Plazi based on the original journal article Steadman, David W., Takano, Oona M. (2020): A new genus and species of pigeon (Aves, Columbidae) from the Kingdom of Tonga, with an evaluation of hindlimb osteology of columbids from Oceania. Zootaxa 4810 (3): 401-420, DOI: https://doi.org/10.11646/zootaxa.4810.3.1
DOI: 10.5255/ukda-sn-853358
title: International and sectoral variation in industrial energy prices 1995-2015

description: This dataset contains sector level energy prices for 12 industrial sectors in 48 countries for the period 1995 to 2015. The prices are constructed as weighted averages of fuel-specific prices by fuel consumption. Two industrial energy price measures have been developed: the Variable Weights Energy Price Level (VEPL) and the Fixed Weights Energy Price Index (FEPI). Original data are provided by the International Energy Agency, as well as other sources. The procedures used to construct the dataset including the methodology developed to reduce missing data-points, are documented in the accompanying paper. In the paper, we provide guidelines for the use of our energy price data, which is made available for download, as well as a set of stylized facts on major trends and variations, and illustrative applications.
DOI: 10.5255/ukda-sn-854298
title: A behavioural economic analysis of reproductive health in Burkina Faso and Tanzania 2016-2019

description: Sexual and reproductive health rights have gained importance over the last three decades. Despite the growing availability of reproductive health services, the uptake of these services remains inadequate among women in low-income countries. One of the main causes of the inadequate uptake of reproductive health services is women's weak control over pregnancy-related decisions. When and how many children to have, and whether and where to seek pre-natal, delivery and post-natal care, are crucial decisions that may shape an important pathway into or out of extreme poverty. To identify policy initiatives that can break the vicious circle between women's low empowerment, poor reproductive health and poverty, this project studies the decision-making processes around the use of reproductive health services. For this, it collected data in Burkina Faso and Tanzania on the uptake of reproductive health services as well as the decision-making process by married or co-habiting couples.
DOI: 10.5255/ukda-sn-854368
title: Tackling the illegal trade of endangered plants, interview data 2018-2020

description: In the context of the "FloraGuard" project, we conducted interviews interested in the characteristics of the illegal wildlife (plant) market, actors involved, policing and plant recovery strategies in United Kingdom, and from a transnational perspective. Illegal commerce in plants and their derivatives threatens and destroys numerous species and important natural resources, and may cause phytosanitary and health problems. This illegal trade, which has been boosted by the commercialisation of the internet, has been relatively overlooked in criminology research. Furthermore, the policing of illegal plant markets remains limited and poorly resourced, with law enforcement agencies lacking awareness and technical capacity in investigation and prosecution services.
DOI: 10.5255/ukda-sn-854063
title: Planning education research in South Africa 2018

description: This dataset was gathered primarily in the first quarter of 2018 with planning professionals and planning educators in South Africa. The purpose of the project was to assess the changing needs within planning education as South Africa has evolved over the last 20 years to determine whether planning education is fit for purpose in its current configuration. The data demonstrates a high level of confidence by participants in the fundamentals of planning education but that there were still considerable issues to tackle in terms of planning for informality and drawing on theoretical perspectives that have greater relevance for the Global South. Included in this dataset is an (anonymised) small survey that was undertaken with planning practitioners in South Africa in 2017 examining their attitudes toward the profession and its future in the country. The survey was sent to practitioners identified via membership of the South African Council for Planners (SACPLAN) the body for professional acreditation for planners in South Africa.
DOI: 10.5255/ukda-sn-854243
title: Self-building social care: Interviews and focus groups with people with learning disabilities and key practitioners 2018-2019

description: These data were generated as part of a two-year ESRC-funded research project examining how people with learning disabilities and their allies are responding to changes in social care provision in the UK, as traditional day services close and policy shifts towards personalisation and community-based enterprises. Using the concept of 'self-building’ to identify emergent practices and learning, researchers at the University of Southampton and the University of Dundee sought to develop case studies in four geographical areas in the UK: an urban and rural area in the South of England, and an urban and rural area in Scotland. The transcripts comprise interviews with local authority commissioners (n=5) and practitioners from supporting organisations (n=22), and focus groups and follow up individual interviews with people with learning disabilities (n=25).
DOI: 10.5255/ukda-sn-853444
title: Shared book reading and the development of phonological awareness 2016-2018

description: Shared book reading has been demonstrated to be an effective way to promote children’s language including preparation for literacy: children who are read to regularly, on average, enter school with better language skills and become more successful readers. However, evidence suggests that shared reading interventions are less effective for children from lower socio-economic background. One aspect of shared book reading that has not yet been investigated is its potential effect on phonological awareness (PA), an important skill in the early stages of phonics-based literacy development. The aim of this research was to investigate the effect of a shared reading intervention that emphasised the form of words (therefore targeting PA), and to explore its interaction with SES status.
DOI: 10.6084/m9.figshare.c.3622979_d6
title: Additional file 2: Table S1. of The pan-genome of Lactobacillus reuteri strains originating from the pig gastrointestinal tract

description: IS elements in L. reuteri ATCC 53608. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3623570_d1
title: Additional file 2 of Evaluating tools for transcription factor binding site prediction

description: Evaluation of search tools using JASPAR.2010 PWMs. Sensitivity, Positive predictive value, Geometric accuracy and False positive rate for the 14 TFBSs that are found in the PAZAR-J dataset. Separate sheets are provided for each of the search tools. (XLS 31.5 kb)
DOI: 10.6084/m9.figshare.c.3623570_d4
title: Additional file 5 of Evaluating tools for transcription factor binding site prediction

description: Evaluation of search tools using PWMs generated from the ENCODE-ChIP-Seq data using rGADEM. Sensitivity, Positive predictive value, Geometric accuracy and False positive rate for the 12 TFBSs that are found in the PAZAR-E dataset. Separate sheets are provided for each of the search tools. (XLS 29.5 kb)
DOI: 10.6084/m9.figshare.c.3623570_d5
title: Additional file 1 of Evaluating tools for transcription factor binding site prediction

description: The PAZAR Reference Dataset. Entries from PAZAR, with the numbers of each TFBS that they contain. The spreadsheet also indicates whether the TFBSs are found in JASPAR and/or the ENCODE-ChIP-Seq data. (XLS 54 kb)
DOI: 10.6084/m9.figshare.c.3623570_d3
title: Additional file 3 of Evaluating tools for transcription factor binding site prediction

description: Motif Discovery Tool Performance. Complete results for individual PWMs generated using different motif discovery tools and scanned against PAZAR-E data using the FIMO motif scanning tool. (XLS 14 kb)
DOI: 10.6084/m9.figshare.c.3624122_d17
title: Additional file 1: of Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets

description: Nucleotide alignment of aphid EOG sequences for phylogenetic analysis. (FASTA 1597 kb)
DOI: 10.6084/m9.figshare.c.3625088_d1
title: Additional file 8: Table S6. of Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass

description: High quality variants detected between ‘Alamo’ and ‘Dacotah’. Table S6 details the high quality variants that were detected between ‘Alamo’ and ‘Dacotah’. This table includes the chromosome and subgenome information, the region on the chromosome where the variant is located, the type and length of variant, the information for ‘Alamo’ and ‘Dacotah’ at this location, and the average base quality as determined by RNA-seq. (XLSX 166 kb)
DOI: 10.6084/m9.figshare.c.3625700_d4
title: Additional file 3: File S2. of Gender differences in murine pulmonary responses elicited by cellulose nanocrystals

description: Enriched gene ontology terms associated with differentially expressed mRNAs in female and male mice upon exposure to CNC. The enriched Cellular Component (CC), Biological Process (BP) and Molecular Function (MF) annotations associated with the differentially expressed genes were predicted using Database for Annotation, Visualization and Integrated Discovery (DAVID) software tool. (XLSX 68 kb)
DOI: 10.6084/m9.figshare.c.3627893_d1
title: Additional file 2: of Leveraging local ancestry to detect gene-gene interactions in genome-wide data

description: R script and corresponding input files to perform 1Â Â° of freedom interaction test between ancestry segments. (ZIP 40Â kb)
DOI: 10.6084/m9.figshare.c.3628256_d3
title: MOESM4 of Time series analysis of malaria in Afghanistan: using ARIMA models to predict future trends in incidence

description: Additional file 3. Area-Averaged of Air temperature at surface (Daytime/Ascending) ().
DOI: 10.6084/m9.figshare.c.3630008_d3
title: Additional file 1: Table S1. of ARN: analysis and prediction by adipogenic professional database

description: All tables of the ARN database. (XLSX 3574 kb)
DOI: 10.6084/m9.figshare.c.3630299_d3
title: Additional file 7: of Genome-wide DNA methylation profile of developing deciduous tooth germ in miniature pigs

description: The up-methylated genes and functions on E60 versus E50. (XLSX 376Â kb)
DOI: 10.6084/m9.figshare.c.3630380_d4
title: Additional file 4 of Conservation of immune gene signatures in solid tumors and prognostic implications

description: Univariate survival analysis. This Excel file contains all results of univariate survival analysis. (XLSX 159 kb)
DOI: 10.5281/zenodo.3943813
title: ESA-WOC North Atlantic Sea Surface Salinity maps from a multivariate combination of satellite and in situ surface measurements (2010-2018)

description: We deliver here the daily sea surface salinity level 4 (SSS L4) product developed in the framework of the European Space Agency World Ocean Circulation project (ESA-WOC), covering the period 2010-2018. This product was obtained by adapting to a 1/10° North Atlantic grid the multidimensional optimal interpolation algorithm used within the Copernicus Marine Environment Monitoring Service to retrieve the global SSS multi-year dataset (http://marine.copernicus.eu/services-portfolio/access-to-products/, product_id: MULTIOBS_GLO_PHY_REP_015_002, dataset_id: dataset-sss-ssd-rep-weekly). This algorithm interpolates SMOS observations and in situ SSS observations considering a space-time-thermal decorrelation function, estimated by including information from high-pass filtered daily SST data (Droghei et al., 2016; Buongiorno Nardelli, 2012). Here, we ingested the L3OS 2Q debiased daily valid ocean salinity values product from SMOS satellite, produced and disseminated by the Centre Aval de Traitement des Données SMOS (CATDS, 2017), OSTIA SST data (CMEMS, http://marine.copernicus.eu/services-portfolio/access-to-products/, product_id=SST_GLO_SST_L4_REP_OBSERVATIONS_010_011) and CORA5.2 surface salinity values (http://marine.copernicus.eu/services-portfolio/access-to-products/, product_id: INSITU_GLO_TS_REP_OBSERVATIONS_013_001_b, doi: 10.17882/46219TS1, Szekely et al., 2019) as input data, and used CMEMS weekly SSS dataset to build our background field (linearly interpolating it in time between the two closest analysis dates, and upsizing to the 1/10° grid through a cubic spline). All other interpolation parameters were set as in Droghei et al. (2018). <em>References:</em> Buongiorno Nardelli, B.: A Novel Approach for the High-Resolution Interpolation of In Situ Sea Surface Salinity, J. Atmos. Ocean. Technol., 29(6), 867–879, doi:10.1175/JTECH-D-11-00099.1, 2012. CATDS (2017). CATDS-PDC L3OS 2Q - Debiased daily valid ocean salinity values product from SMOS satellite. CATDS (CNES, IFREMER, LOCEAN, ACRI). http://dx.doi.org/10.12770/12dba510-cd71-4d4f-9fc1-9cc027d128b0 Droghei, R., Buongiorno Nardelli, B. and Santoleri, R.: Combining in-situ and satellite observations to retrieve salinity and density at the ocean surface, J. Atmos. Ocean. Technol., 33, 1211–1223, doi:10.1175/JTECH-D-15-0194.1, 2016. Droghei, R., Buongiorno Nardelli, B. and Santoleri, R.: A New Global Sea Surface Salinity and Density Dataset From Multivariate Observations (1993–2016), Front. Mar. Sci., 5(March), 1–13, doi:10.3389/fmars.2018.00084, 2018. Szekely, T., Gourrion, J., Pouliquen, S. and Reverdin, G.: The CORA 5.2 dataset for global in situ temperature and salinity measurements: Data description and validation, Ocean Sci., 15(6), 1601–1614, doi:10.5194/os-15-1601-2019, 2019.
DOI: 10.5281/zenodo.3943812
title: ESA-WOC North Atlantic Sea Surface Salinity maps from a multivariate combination of satellite and in situ surface measurements (2010-2018)

description: We deliver here the daily sea surface salinity level 4 (SSS L4) product developed in the framework of the European Space Agency World Ocean Circulation project (ESA-WOC), covering the period 2010-2018. This product was obtained by adapting to a 1/10° North Atlantic grid the multidimensional optimal interpolation algorithm used within the Copernicus Marine Environment Monitoring Service to retrieve the global SSS multi-year dataset (http://marine.copernicus.eu/services-portfolio/access-to-products/, product_id: MULTIOBS_GLO_PHY_REP_015_002, dataset_id: dataset-sss-ssd-rep-weekly). This algorithm interpolates SMOS observations and in situ SSS observations considering a space-time-thermal decorrelation function, estimated by including information from high-pass filtered daily SST data (Droghei et al., 2016; Buongiorno Nardelli, 2012). Here, we ingested the L3OS 2Q debiased daily valid ocean salinity values product from SMOS satellite, produced and disseminated by the Centre Aval de Traitement des Données SMOS (CATDS, 2017), OSTIA SST data (CMEMS, http://marine.copernicus.eu/services-portfolio/access-to-products/, product_id=SST_GLO_SST_L4_REP_OBSERVATIONS_010_011) and CORA5.2 surface salinity values (http://marine.copernicus.eu/services-portfolio/access-to-products/, product_id: INSITU_GLO_TS_REP_OBSERVATIONS_013_001_b, doi: 10.17882/46219TS1, Szekely et al., 2019) as input data, and used CMEMS weekly SSS dataset to build our background field (linearly interpolating it in time between the two closest analysis dates, and upsizing to the 1/10° grid through a cubic spline). All other interpolation parameters were set as in Droghei et al. (2018). <em>References:</em> Buongiorno Nardelli, B.: A Novel Approach for the High-Resolution Interpolation of In Situ Sea Surface Salinity, J. Atmos. Ocean. Technol., 29(6), 867–879, doi:10.1175/JTECH-D-11-00099.1, 2012. CATDS (2017). CATDS-PDC L3OS 2Q - Debiased daily valid ocean salinity values product from SMOS satellite. CATDS (CNES, IFREMER, LOCEAN, ACRI). http://dx.doi.org/10.12770/12dba510-cd71-4d4f-9fc1-9cc027d128b0 Droghei, R., Buongiorno Nardelli, B. and Santoleri, R.: Combining in-situ and satellite observations to retrieve salinity and density at the ocean surface, J. Atmos. Ocean. Technol., 33, 1211–1223, doi:10.1175/JTECH-D-15-0194.1, 2016. Droghei, R., Buongiorno Nardelli, B. and Santoleri, R.: A New Global Sea Surface Salinity and Density Dataset From Multivariate Observations (1993–2016), Front. Mar. Sci., 5(March), 1–13, doi:10.3389/fmars.2018.00084, 2018. Szekely, T., Gourrion, J., Pouliquen, S. and Reverdin, G.: The CORA 5.2 dataset for global in situ temperature and salinity measurements: Data description and validation, Ocean Sci., 15(6), 1601–1614, doi:10.5194/os-15-1601-2019, 2019.