cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16311735
title: Case study data MS2Deepscore 2.0

description: The case study data accompanying the paper: Bridging polarities in metabolomics: Cross-ion mode chemical similarity prediction between tandem mass spectra. The data collection for the Urine and Blood plasma was done by the National Phenome Centre and the data was processed by Elena Chekmeneva. The Rumex sanguineus case study data was collected by Valentina Ramundi. 

If you use this data please cite:

The MS2Deepscore 2.0 paper: Bridging polarities in metabolomics: Cross-ion mode chemical similarity prediction between tandem mass spectra.

If you use the Blood plasma or Urine case study please cite the following:

https://doi.org/10.1021/acs.analchem.1c04378

If you use the Rumex case study results please cite:

Ramundi V, Zdouc MM, Donati E, van der Hooft JJJ, Cimini S, Righetti L. Non-targeted metabolomics-based molecular networking enables the chemical characterization of Rumex sanguineus, a wild edible plant. Metabolomics. 2025 Jan 24;21(1):19. doi: 10.1007/s11306-024-02210-2. PMID: 39853612; PMCID: PMC11761831.
DOI: 10.5284/1134909
title: Privately-Owned English Urban Manuscripts, 1300-1476 (Urban Manuscript Project)

description: This database contains descriptions of over 300 manuscripts deposited in libraries, dating from the late medieval period, roughly 1300-1500. Each manuscript and its contents is fully described. Full information has been given about the owners of each manuscript (names, gender, occupation) and the producers of each manuscript. Manuscripts have only been included in the dataset if they fulfil one of three 'urban' criteria: the manuscript must either have been owned or produced in an urban environment or must contain material relating to towns (for example, list of streets in Bristol, lists of the names of mayors and sheriffs and chronicles relating specifically to London).
The database was created by researchers at the University of York and funded by a grant from the Arts and Humanities Research Board.
DOI: 10.15468/dl.yuq9xv
title: Occurrence Download

description: A dataset containing 918 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((24.47075 54.76593,24.55404 54.76593,24.55404 54.81396,24.47075 54.81396,24.47075 54.76593))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 918 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027405-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.su949m
title: Occurrence Download

description: A dataset containing 289 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chaerophyllum involucratum"
 ]
}

 The dataset includes 289 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027403-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9dyt95
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Echinochloa crus-galli",
 "Country is Cuba",
 "HasCoordinate is true"
 ]
}

 The dataset includes 33 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027404-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yktr3n
title: Occurrence Download

description: A dataset containing 481 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Echinochloa crus-galli",
 "Country is Estonia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 481 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027407-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hxakcs
title: Occurrence Download

description: A dataset containing 199 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendrosenecio keniensis",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 199 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027406-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16311310
title: Collecting Industrial Control System Device Data on the Internet: A Dataset for Domain Benchmark

description: Due to the limited understanding of Industrial Control Systems (ICSs), device identification has become increasingly vital for threat detection and security defense in ICS environments. However, the narrow range of device types and models in the existing datasets has significantly hindered the effectiveness and scalability of current device identification methods. To address this gap, we introduce a novel data collection framework specifically designed for ICS devices and present the resulting dataset, ICSLibrary, which we have made publicly available. To the best of the authors' knowledge, ICSLibrary is the first dataset dedicated to device identification in ICS security. It encompasses the most extensive range of device types, models and instances from 27 industrial vendors, collected across two countries over a 21-month period. Furthermore, we use ICSLibrary as a benchmark to evaluate several typical device fingerprinting methods, revealing a notable 16% drop in accuracy in the device model identification task, which highlights the unique challenges posed by ICSLibrary.
DOI: 10.5281/zenodo.14984907
title: Collecting Industrial Control System Device Data on the Internet: A Dataset for Domain Benchmark

description: Due to the limited understanding of Industrial Control Systems (ICSs), device identification has become increasingly vital for threat detection and security defense in ICS environments. However, the narrow range of device types and models in the existing datasets has significantly hindered the effectiveness and scalability of current device identification methods. To address this gap, we introduce a novel data collection framework specifically designed for ICS devices and present the resulting dataset, ICSLibrary, which we have made publicly available. To the best of the authors' knowledge, ICSLibrary is the first dataset dedicated to device identification in ICS security. It encompasses the most extensive range of device types, models and instances from 27 industrial vendors, collected across two countries over a 21-month period. Furthermore, we use ICSLibrary as a benchmark to evaluate several typical device fingerprinting methods, revealing a notable 16% drop in accuracy in the device model identification task, which highlights the unique challenges posed by ICSLibrary.
DOI: 10.15468/dl.agvrfe
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salvelinus fontinalis",
 "Country is Montenegro",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027409-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c4cfmr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Echinochloa crus-galli",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027408-250717081556266/datasets/export for details.
DOI: 10.15468/dl.ukwymc
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salvelinus fontinalis",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 40 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027410-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/4sshyj
title: Replication Data for: Who Is Credible? Government Popularity and the Catalytic Effect of IMF Lending

description: In this article, I explain variations in international investors’ reactions to International Monetary Fund (IMF) programs. Investors react favorably if a borrowing government is credibly committed to implementing essential IMF conditionality. Instead of engaging complex information processing about economic reform, however, investors rely on a heuristic device to assess the borrower’s domestic political conditions. I argue that a borrowing government’s popularity is an important cue for investors to assess the prospect of the program. Investors associate higher government popularity with better implementation of the program and react more favorably to more popular borrowers. Using annual data from up to 52 emerging market economies from 1998 to 2017, I find robust statistical evidence supporting these claims: an IMF program alone does not restore investor confidence. Rather, an IMF program carried out by a strong government does. My findings have important implications for the study of global financial governance and credible commitment.
DOI: 10.15468/dl.32puxx
title: Occurrence Download

description: A dataset containing 156 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Humulus lupulus",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 156 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027411-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sq7zu8
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schismus barbatus",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 50 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027413-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ev2hrc
title: Occurrence Download

description: A dataset containing 13050 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Humulus lupulus",
 "Country is Russian Federation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13050 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027412-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16311970
title: Legacy effects of vegetation autumn phenology enhance spring phenology modeling across northern ecosystems

description: Supporting code and data for the study on legacy effects of autumn phenology on spring green-up. Code and satellite-based phenology data (GUD/DFS) used in our study on autumn legacy effects across the Northern Hemisphere.
DOI: 10.5281/zenodo.16311969
title: Legacy effects of vegetation autumn phenology enhance spring phenology modeling across northern ecosystems

description: Supporting code and data for the study on legacy effects of autumn phenology on spring green-up. Code and satellite-based phenology data (GUD/DFS) used in our study on autumn legacy effects across the Northern Hemisphere.
DOI: 10.15468/dl.8b7h9t
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Egretta thula)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 56 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027415-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wpxj39
title: Occurrence Download

description: A dataset containing 288 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aegilops juvenalis"
 ]
}

 The dataset includes 288 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027414-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tfan95
title: Occurrence Download

description: A dataset containing 1649 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ranunculus lyallii"
 ]
}

 The dataset includes 1649 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027416-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nu6yn8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Echinochloa crus-galli",
 "Country is Fiji",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027419-250717081556266/datasets/export for details.
DOI: 10.15468/dl.427fkw
title: Occurrence Download

description: A dataset containing 4669 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Geranium seemannii"
 ]
}

 The dataset includes 4669 records from 136 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027417-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.prj5s7
title: Occurrence Download

description: A dataset containing 163103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Andorra",
 "Geometry POLYGON((-16.64723 35.24421,19.64723 35.24421,19.64723 49.75579,-16.64723 49.75579,-16.64723 35.24421))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 163103 records from 162 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027386-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fnjezx
title: Occurrence Download

description: A dataset containing 34538 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chamaecrista fasciculata"
 ]
}

 The dataset includes 34538 records from 288 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027418-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.an24qa
title: Occurrence Download

description: A dataset containing 272 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendrosenecio keniodendron",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 272 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027420-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.77jbd4
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Echinochloa crus-galli",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 76 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027421-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p85uc8
title: Occurrence Download

description: A dataset containing 8863 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Atlides"
 ]
}

 The dataset includes 8863 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027422-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xscaj8
title: Occurrence Download

description: A dataset containing 2779 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schismus barbatus",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2779 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027423-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.benu32
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Echinochloa crus-galli",
 "Country is Iran (Islamic Republic of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027425-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bze3ru
title: Occurrence Download

description: A dataset containing 647 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Elaeagnus reflexa",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 647 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027426-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nzemet
title: Occurrence Download

description: A dataset containing 1946 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salvelinus fontinalis",
 "Country is Norway",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1946 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027429-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5524/100375
title: Supporting data for "funRiceGenes dataset for comprehensive understanding and application of rice functional genes"

description: As a main staple food, rice is also a model plant for functional genomics researches of monocots. Decoding of every DNA element of the rice genome is essential for genetic improvement to address the increasing food demands. The past 15 years have witnessed extraordinary advances in rice functional genomics. Systematic characterization and proper deposition of every rice gene are vital for both functional studies and crop genetic improvement. We built a comprehensive and accurate dataset of ~2,800 functionally characterized rice genes and ~5,000 members of different gene families, by integrating data from available database and review of every publication of rice functional genomics researches. The dataset accounts for 19.2% of the 39,045 annotated protein-coding rice genes, which provides the most exhaustive archive for investigating the functions of rice genes. We also constructed 214 gene interaction networks based on 1,841 connections between 1,310 genes. The largest network with 762 genes indicated that pleiotropic genes linked different biological pathways. Increasing degree of conservation of the flowering pathway was identified among closer related plants, implying substantial value for rice genes in future dissection of flowering regulation in other crops. All data are deposited in the funRiceGenes database (https://funricegenes.github.io/), with interactive query and continuous updating using a Shiny application (http://funricegenes.ncpgr.cn/).
DOI: 10.15468/dl.7wbnmv
title: Occurrence Download

description: A dataset containing 647 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salvelinus fontinalis",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 647 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027428-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16100540
title: Unaccounted impacts of diterpene emissions on atmospheric aerosol loadings: model data and supplementary tables

description: Data from model experiments (LitData, Scaled, ScaledHighSOA, ScaledLowSOA, ScaledMin, ScaledMax) and supplementary information tables as presented in Yañez-Serrano et al. "Unaccounted impacts of diterpene emissions on atmospheric aerosol loadings".
DOI: 10.5281/zenodo.16100541
title: Unaccounted impacts of diterpene emissions on atmospheric aerosol loadings: model data and supplementary tables

description: Data from model experiments (LitData, Scaled, ScaledHighSOA, ScaledLowSOA, ScaledMin, ScaledMax) and supplementary information tables as presented in Yañez-Serrano et al. "Unaccounted impacts of diterpene emissions on atmospheric aerosol loadings".
DOI: 10.15468/dl.n5a4ve
title: Occurrence Download

description: A dataset containing 7539 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ranunculus occidentalis"
 ]
}

 The dataset includes 7539 records from 168 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027430-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.