cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/6bba5b536a98b407a66797888d1301bc
title: Thymidine uptake rates for estimating bacterial production in lakes, McMurdo Dry Valleys, Antarctica (1993-2017, ongoing)

description: An important part of the McMurdo Long Term Ecological Research (LTER) is monitoring of spatial and temporal patterns, and processes that control bacterial production in perennial ice-covered lakes. This data set quantifies thymidine (TdR) uptake by bacteria, which can be used to estimate bacterial production.
DOI: 10.5517/ccdc.csd.cc291ymy
title: CCDC 2117040: Experimental Crystal Structure Determination

description: Related Article: Xiao-Peng Sun, Zheng Tang, Jiajia Li, Pengtao Ma, Zi-Shuo Yao, Jingping Wang, Jingyang Niu, Jun Tao|2022|Inorg.Chem.|61|4240|doi:10.1021/acs.inorgchem.1c03898
DOI: 10.5517/ccdc.csd.cc291ynz
title: CCDC 2117041: Experimental Crystal Structure Determination

description: Related Article: Xiao-Peng Sun, Zheng Tang, Jiajia Li, Pengtao Ma, Zi-Shuo Yao, Jingping Wang, Jingyang Niu, Jun Tao|2022|Inorg.Chem.|61|4240|doi:10.1021/acs.inorgchem.1c03898
DOI: 10.5517/ccdc.csd.cc291yp0
title: CCDC 2117042: Experimental Crystal Structure Determination

description: Related Article: Xiao-Peng Sun, Zheng Tang, Jiajia Li, Pengtao Ma, Zi-Shuo Yao, Jingping Wang, Jingyang Niu, Jun Tao|2022|Inorg.Chem.|61|4240|doi:10.1021/acs.inorgchem.1c03898
DOI: 10.5517/ccdc.csd.cc291yq1
title: CCDC 2117043: Experimental Crystal Structure Determination

description: Related Article: Xiao-Peng Sun, Zheng Tang, Jiajia Li, Pengtao Ma, Zi-Shuo Yao, Jingping Wang, Jingyang Niu, Jun Tao|2022|Inorg.Chem.|61|4240|doi:10.1021/acs.inorgchem.1c03898
DOI: 10.6073/pasta/7532942ba96acc3b5c608633655f9de0
title: CTD profiles in lakes, McMurdo Dry Valleys, Antarctica (1993-2019, ongoing)

description: As part of the Long Term Ecological Research (LTER) project in the McMurdo Dry Valleys of Antarctica, a series of Taylor Valley lakes have been monitored for conductivity, temperature and depth. A Seabird 25 CTD (conductivity, temperature, and depth) instrument was used to record temperature profiles in perennial ice covered lakes.
DOI: 10.6073/pasta/940cd1b5498f4e0e57810b56551ac373
title: Dissolved organic carbon (DOC) concentrations in discrete water column samples collected from lakes in the McMurdo Dry Valleys, Antarctica (1993-2020, ongoing)

description: The McMurdo Long Term Ecological Research (LTER) project monitors patterns of organic material transport in perennial ice-capped lakes. This data set addresses this core area of research and quantifies dissolved organic carbon concentrations at specific depths in McMurdo Dry Valley lakes.
DOI: 10.7289/v5rr1w7s
title: Archive of Geosample Data and Information from the Oregon State University (OSU) College of Earth, Ocean, and Atmospheric Sciences (CEOAS) Marine and Geology Repository (MGR) Antarctic Core Collection (ACC)
DOI: 10.5281/zenodo.6369284
title: Generated Data for the Manuscript "Nonideality-Aware Training for Accurate and Robust Low-Power Memristive Neural Networks"

description: The file contains data generated and referred to in the text and the figures of the manuscript.
DOI: 10.5281/zenodo.5775044
title: Generated Data for the Manuscript "Nonideality-Aware Training for Accurate and Robust Low-Power Memristive Neural Networks"

description: The file contains data generated and referred to in the text and the figures of the manuscript.
DOI: 10.6084/m9.figshare.19386155
title: Covid_news_social media 2020 2021

description: data set<br>
DOI: 10.6084/m9.figshare.19100041.v1
title: Improved Estimation of High-dimensional Additive Models Using Subspace Learning

description: Additive models have been widely used as a flexible nonparametric regression method that can overcome the curse of dimensionality. Using sparsity-inducing penalty for variable selection, several methods are developed for fitting additive models when the number of predictors is very large, sometimes even larger than the sample size. However, despite good asymptotic properties, the finite sample performance of these methods may deteriorate considerably when the number of relevant predictors becomes moderately large. This article proposes a new method that reduces the number of unknown functions to be nonparametrically estimated through learning a predictive subspace representation shared by the additive component functions. The subspace learning is integrated with sparsity-inducing penalization in a penalized least squares formulation and an efficient algorithm is developed for computation involving Stiefel matrix manifold optimization and proximal thresholding operators on matrices. Theoretical convergence properties of the algorithm are studied. The proposed method is shown to be competitive with existing methods in simulation studies and a real data example. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.19100041
title: Improved Estimation of High-dimensional Additive Models Using Subspace Learning

description: Additive models have been widely used as a flexible nonparametric regression method that can overcome the curse of dimensionality. Using sparsity-inducing penalty for variable selection, several methods are developed for fitting additive models when the number of predictors is very large, sometimes even larger than the sample size. However, despite good asymptotic properties, the finite sample performance of these methods may deteriorate considerably when the number of relevant predictors becomes moderately large. This article proposes a new method that reduces the number of unknown functions to be nonparametrically estimated through learning a predictive subspace representation shared by the additive component functions. The subspace learning is integrated with sparsity-inducing penalization in a penalized least squares formulation and an efficient algorithm is developed for computation involving Stiefel matrix manifold optimization and proximal thresholding operators on matrices. Theoretical convergence properties of the algorithm are studied. The proposed method is shown to be competitive with existing methods in simulation studies and a real data example. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.19100089
title: The Mellin Transform to Manage Quadratic Forms in Normal Random Variables

description: The problem of computing the distribution of quadratic forms in normal variables has a long tradition in the statistical literature. Well-established numerical algorithms that deal with this task rely on the inversion of Fourier transforms or series representations. In this article, the Mellin transform is proposed as a tool to compute both the density and the cumulative distribution functions of a positive definite quadratic form: an outline of the numerical algorithm is presented, providing details on the error analysis. The algorithm’s characteristics allow us to propose an efficient way to compute the random variables’ quantiles. From the theoretical point of view, the analytic properties of the Mellin transform are exploited to provide a novel representation of the distribution of the ratio of independent quadratic forms as a mixture of beta random variables of the second kind. Moreover, algorithms are proposed for computations related to ratios of both independent and dependent quadratic forms. The methods are tested and compared to popular numerical algorithms in terms of computational times and accuracy. The R package QF implementing all the proposed algorithms is also made available. Supplementary materials for this article are available online.
DOI: 10.25919/f0vs-b226
title: Parkes observations for project P1141 semester 2021OCTS_08

description: Radio giant pulses (GPs) have been observed since the discovery of the Crab pulsar more than 50 years ago. Nevertheless the origins of this apparently irregular form of radio emission are still not understood. While their characteristics indicate the existence of a coherent emission mechanism, the search for an incoherent emission component via multi-wavelength correlation studies provides one way to identify potential emission regions in the magnetosphere of the pulsar. With the present proposal, we address the radio GP emission from PSR J0540-6919 (the Crab twin) and seek to search for a correlation with its X-ray emission. A recent study of this kind for the Crab pulsar proved to be successful (Enoto et al.\,2021). Our proposed study is to the best of our knowledge the first of its kind together with the Neutron Star Interior Composition ExploreR (NICER) for this particular source and will shed light on the question of whether correlations with X-ray emission are a characteristic of ordinary pulsars with radio GP emission. Such knowledge will be useful in unraveling whether there are different populations of radio GPs in the case of ordinary and millisecond pulsars.
DOI: 10.25919/qp6n-j175
title: Parkes observations for project P885 semester 2021OCTS_15

description: We request a reduced monitoring cadence for the magnetars 1E 1547.0-5408 and Swift J1818.0-1607 to once every 10 days, to track their rotation, flux density, and polarisation. Swift J1818.0-1607 remains very dynamic, and the unique UWL capabilities promise new opportunities to probe still mysterious radio emission mechanisms in magnetars. Our timing results indicate that 1E 1547.0-5408 is currently a more stable rotator, supporting the diminished cadence. We will observe XTE J1810-197 and PSR J1622-4950 less frequently, to complement monitoring elsewhere. The overall request is 18 hours.
DOI: 10.6084/m9.figshare.19100089.v1
title: The Mellin transform to manage quadratic forms in normal random variables

description: The problem of computing the distribution of quadratic forms in normal variables has a long tradition in the statistical literature. Well-established numerical algorithms that deal with this task rely on the inversion of Fourier transforms or series representations. In this paper, the Mellin transform is proposed as a tool to compute both the density and the cumulative distribution functions of a positive definite quadratic form: an outline of the numerical algorithm is presented, providing details on the error analysis. The algorithm’s characteristics allow us to propose an efficient way to compute the random variables’ quantiles. From the theoretical point of view, the analytic properties of the Mellin transform are exploited to provide a novel representation of the distribution of the ratio of independent quadratic forms as a mixture of beta random variables of the second kind. Moreover, algorithms are proposed for computations related to ratios of both independent and dependent quadratic forms. The methods are tested and compared to popular numerical algorithms in terms of computational times and accuracy. The R package QF implementing all the proposed algorithms is also made available. Supplementary information is available online.
DOI: 10.5281/zenodo.6369292
title: Differential Ablation of Organic Coatings from Micrometeoroids Simulated in the Laboratory

description: The presented data are for an article entitled "Differential Ablation of Organic Coatings from Micrometeoroids Simulated in the Laboratory" that has been submitted for publication to <em>Journal of Geophysical Research - Planets</em>. The file ppy_ablation_data.csv contains the initial mass and initial velocity for each of the 22 PPy-coated olivine dust particle, <br> the gas target pressure, and the charges (in number of electrons) collected by the 16 charge collectors inside the gas target. <br> The value in column "Included" is set to "True" if the particle was among the 18 particles used to calculate charge yields and to fit the model in the article. File Impact_event.zip contains the final impact signals for each of the 22 particles. The impact signals are presented as voltage signals vs. time in CSV format. The units for all data are indicated in the column name.
DOI: 10.5281/zenodo.6369291
title: Differential Ablation of Organic Coatings from Micrometeoroids Simulated in the Laboratory

description: The presented data are for an article entitled "Differential Ablation of Organic Coatings from Micrometeoroids Simulated in the Laboratory" that has been submitted for publication to <em>Journal of Geophysical Research - Planets</em>. The file ppy_ablation_data.csv contains the initial mass and initial velocity for each of the 22 PPy-coated olivine dust particle, <br> the gas target pressure, and the charges (in number of electrons) collected by the 16 charge collectors inside the gas target. <br> The value in column "Included" is set to "True" if the particle was among the 18 particles used to calculate charge yields and to fit the model in the article. File Impact_event.zip contains the final impact signals for each of the 22 particles. The impact signals are presented as voltage signals vs. time in CSV format. The units for all data are indicated in the column name.
DOI: 10.5281/zenodo.6369271
title: Elanus axillaris SPAdes preassembly

description: .
DOI: 10.5281/zenodo.6369270
title: Elanus axillaris SPAdes preassembly

description: .
DOI: 10.22003/xfel.eu-data-002832-00
title: Ultrafast X-ray Photon Correlation Spectroscopy - A Community Proposal
DOI: 10.6084/m9.figshare.17096636
title: Harmonizing labeling and analytical strategies to obtain protein turnover rates in intact adult animals

description: Changes in the abundance of individual proteins in the proteome can be elicited by modulation of protein synthesis (the rate of input of newly synthesised proteins into the protein pool) or degradation (the rate of removal of protein molecules from the pool). A full understanding of proteome changes therefore requires a definition of the roles of these two processes in proteostasis, collectively known as protein turnover. Because protein turnover occurs even in the absence of overt changes in pool abundance, turnover measurements necessitate monitoring the flux of stable isotope labeled precursors through the protein pool such as labeled amino acids or metabolic precursors such as ammonium chloride or heavy water. In cells in culture, the ability to manipulate precursor pools by rapid medium changes is simple, but for more complex systems such as intact animals, the approach becomes more convoluted. Individual methods bring specific complications, and the suitability of different methods has not been comprehensively explored. In this study we compare the turnover rates of proteins across four mouse tissues, obtained from the same inbred mouse strain maintained under identical husbandry conditions, measured using either [13C6]lysine or [2H2]O as the labeling precursor. We show that for long lived proteins, the two approaches yield essentially identical measures of the first order rate constant for degradation, but that for short lived proteins, there is a need to compensate for the slower equilibration of lysine through the precursor pools. The two approaches yield comparable turnover rates when certain amino acid labeling precursor enrichment rate constants are used in a two-compartment kinetics model; however, the measurement of precursor enrichment rate remains a challenge.<br><br>
DOI: 10.6084/m9.figshare.17096636.v4
title: Harmonizing labeling and analytical strategies to obtain protein turnover rates in intact adult animals

description: Changes in the abundance of individual proteins in the proteome can be elicited by modulation of protein synthesis (the rate of input of newly synthesised proteins into the protein pool) or degradation (the rate of removal of protein molecules from the pool). A full understanding of proteome changes therefore requires a definition of the roles of these two processes in proteostasis, collectively known as protein turnover. Because protein turnover occurs even in the absence of overt changes in pool abundance, turnover measurements necessitate monitoring the flux of stable isotope labeled precursors through the protein pool such as labeled amino acids or metabolic precursors such as ammonium chloride or heavy water. In cells in culture, the ability to manipulate precursor pools by rapid medium changes is simple, but for more complex systems such as intact animals, the approach becomes more convoluted. Individual methods bring specific complications, and the suitability of different methods has not been comprehensively explored. In this study we compare the turnover rates of proteins across four mouse tissues, obtained from the same inbred mouse strain maintained under identical husbandry conditions, measured using either [13C6]lysine or [2H2]O as the labeling precursor. We show that for long lived proteins, the two approaches yield essentially identical measures of the first order rate constant for degradation, but that for short lived proteins, there is a need to compensate for the slower equilibration of lysine through the precursor pools. The two approaches yield comparable turnover rates when certain amino acid labeling precursor enrichment rate constants are used in a two-compartment kinetics model; however, the measurement of precursor enrichment rate remains a challenge.<br><br>
DOI: 10.6084/m9.figshare.17096636.v3
title: Harmonizing labeling and analytical strategies to obtain protein turnover rates in intact adult animals

description: Changes in the abundance of individual proteins in the proteome can be elicited by modulation of protein synthesis (the rate of input of newly synthesised proteins into the protein pool) or degradation (the rate of removal of protein molecules from the pool). A full understanding of proteome changes therefore requires a definition of the roles of these two processes in proteostasis, collectively known as protein turnover. Because protein turnover occurs even in the absence of overt changes in pool abundance, turnover measurements necessitate monitoring the flux of stable isotope labeled precursors through the protein pool such as labeled amino acids or metabolic precursors such as ammonium chloride or heavy water. In cells in culture, the ability to manipulate precursor pools by rapid medium changes is simple, but for more complex systems such as intact animals, the approach becomes more convoluted. Individual methods bring specific complications, and the suitability of different methods has not been comprehensively explored. In this study we compare the turnover rates of proteins across four mouse tissues, obtained from the same inbred mouse strain maintained under identical husbandry conditions, measured using either [13C6]lysine or [2H2]O as the labeling precursor. We show that for long lived proteins, the two approaches yield essentially identical measures of the first order rate constant for degradation, but that for short lived proteins, there is a need to compensate for the slower equilibration of lysine through the precursor pools. The two approaches yield comparable turnover rates when certain amino acid labeling precursor enrichment rate constants are used in a two-compartment kinetics model; however, the measurement of precursor enrichment rate remains a challenge.<br><br>
DOI: 10.5281/zenodo.6369309
title: Pleurobrachia bachei SPAdes preassembly

description: .
DOI: 10.5281/zenodo.6369308
title: Pleurobrachia bachei SPAdes preassembly

description: .
DOI: 10.6084/m9.figshare.3761562.v2161
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.15468/dl.82mqre
title: Occurrence Download

description: A dataset containing 5570 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Sphyrna lewini (Griffith & Smith, 1834)"
 ]
}

 The dataset includes 5570 records from 150 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0254840-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tmmeyy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prionoxystus macmurtrei Guérin-Méneville, 1829",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is Poland",
 "Country is Poland"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0394144-210914110416597/datasets/export for details.
DOI: 10.15468/dl.7by6qn
title: Occurrence Download

description: A dataset containing 943 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 {
 "or" : [
 "Country is Japan",
 "Country is China",
 "Country is Chinese Taipei",
 "Country is Korea, Republic of",
 "Country is Korea (Democratic People’s Republic of)"
 ]
 },
 {
 "or" : [
 "DatasetKey is Vascular plant specimens of National Museum of Nature and Science (TNS)",
 "DatasetKey is Herbarium of Taiwan Forestry Research Institute",
 "DatasetKey is T.B. Lee Herbarium Vascular Plant Collection",
 "DatasetKey is Flora of the Korean Peninsula Phase II",
 "DatasetKey is Royal Botanic Gardens, Kew - Herbarium Specimens",
 "DatasetKey is NMNH Extant Specimen Records (USNM, US)",
 "DatasetKey is Harvard University Herbaria: All Records",
 "DatasetKey is Naturalis Biodiversity Center (NL) - Botany",
 "DatasetKey is The New York Botanical Garden Herbarium (NY)"
 ]
 },
 "TaxonKey is Clerodendrum trichotomum Thunb."
 ]
}

 The dataset includes 943 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044227-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yg2t2k
title: Occurrence Download

description: A dataset containing 2272 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-8.39795 35.4375,0.09229 36.83039,7.38721 41.41406,5.52393 44.08594,-5.21631 44.87695,-9.85693 43.55859,-9.8042 36.52734,-8.39795 35.4375))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Myotis capaccinii (Bonaparte, 1837)"
 ]
}

 The dataset includes 2272 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070401-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pw9pxe
title: Occurrence Download

description: A dataset containing 1710 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-83.15979 29.37594,-83.26087 29.27839,-82.76231 27.31223,-82.29419 27.36737,-82.36184 27.95048,-82.72044 29.42057,-83.15979 29.37594))",
 "OccurrenceStatus is Present",
 "TaxonKey is Lucinidae"
 ]
}

 The dataset includes 1710 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0254849-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q3mtg2
title: Occurrence Download

description: A dataset containing 133918 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Echinochloa crus-galli (L.) P.Beauv."
 ]
}

 The dataset includes 133918 records from 719 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040537-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.