cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20325148.v1
title: Additional file 6 of Construction of a novel necroptosis-related lncRNA signature for prognosis prediction in esophageal cancer

description: Additional file 6: Table S6. 171 samples of transcriptome data containing EC and normal samples from the TCGA database..
DOI: 10.6084/m9.figshare.20325136.v1
title: Additional file 2 of Construction of a novel necroptosis-related lncRNA signature for prognosis prediction in esophageal cancer

description: Additional file 2: Table S2. 171 samples of transcriptome data containing EC and normal samples from the TCGA database..
DOI: 10.6084/m9.figshare.20325151.v1
title: Additional file 7 of Construction of a novel necroptosis-related lncRNA signature for prognosis prediction in esophageal cancer

description: Additional file 7: Table S7. The complete clinical data of 185 EC patients from the TCGA database.
DOI: 10.6084/m9.figshare.20325157
title: Additional file 9 of Construction of a novel necroptosis-related lncRNA signature for prognosis prediction in esophageal cancer

description: Additional file 9: Table S9. The list of 412 differentially expressed necroptosis-related lncRNAs.
DOI: 10.5281/zenodo.10694574
title: Datasets for "From Earth to Space and Back Again: 130 years of geophysical research as told through the titles of AGU journal articles"

description: These files include a file with journal article titles published by the American Geophysical Union for the years 1896 through 2022 and a file showing words included and exluded from the analysis and the category of word (scientific or non-scientific).
DOI: 10.6084/m9.figshare.20325157.v1
title: Additional file 9 of Construction of a novel necroptosis-related lncRNA signature for prognosis prediction in esophageal cancer

description: Additional file 9: Table S9. The list of 412 differentially expressed necroptosis-related lncRNAs.
DOI: 10.6084/m9.figshare.18752518
title: Transport mechanisms and desalination performance of the PSF/UiO-66 thin-film composite membrane: a molecular dynamics study

description: A novel non-equilibrium molecular dynamics (MD) model was presented to investigate the transport mechanisms and desalination performance of thin-film composite membranes (TFC). Firstly, polyamide (PA) and polysulfone (PSF), or PSF/UiO-66 models, were constructed as active and support layers. Subsequently, feed solution and draw solutions with 0.5, 1.0, and 1.5 M salt concentrations were generated. Thirdly, these aqueous and membranes were combined to build forward osmosis (FO) models. The FO process was simulated to anatomise the membrane fouling, water flux, and salt rejection, which JAVA and MD programs were combined to calculate. The results indicated that the PA-PSF/UiO-66 membrane exhibited a stable water transport and salt rejection performance compared to the pristine PA and PA-PSF membranes. Finally, experiments and simulations were compared, and the same trends were found. Therefore, this simulation work provided significant insight in guiding the design and synthesis of the FO membrane.
DOI: 10.6084/m9.figshare.18752518.v1
title: Transport mechanisms and desalination performance of the PSF/UiO-66 thin-film composite membrane: a molecular dynamics study

description: A novel non-equilibrium molecular dynamics (MD) model was presented to investigate the transport mechanisms and desalination performance of thin-film composite membranes (TFC). Firstly, polyamide (PA) and polysulfone (PSF), or PSF/UiO-66 models, were constructed as active and support layers. Subsequently, feed solution and draw solutions with 0.5, 1.0, and 1.5 M salt concentrations were generated. Thirdly, these aqueous and membranes were combined to build forward osmosis (FO) models. The FO process was simulated to anatomise the membrane fouling, water flux, and salt rejection, which JAVA and MD programs were combined to calculate. The results indicated that the PA-PSF/UiO-66 membrane exhibited a stable water transport and salt rejection performance compared to the pristine PA and PA-PSF membranes. Finally, experiments and simulations were compared, and the same trends were found. Therefore, this simulation work provided significant insight in guiding the design and synthesis of the FO membrane.
DOI: 10.6084/m9.figshare.20325447
title: Data of Figure9 from Effect of stacking order on the vibration properties of bilayer black phosphorus

description: Data of Figure9 from the main manuscript
DOI: 10.6084/m9.figshare.20325447.v1
title: Data of Figure9 from Effect of stacking order on the vibration properties of bilayer black phosphorus

description: Data of Figure9 from the main manuscript
DOI: 10.6084/m9.figshare.20325450
title: Data of Figure5 from Effect of stacking order on the vibration properties of bilayer black phosphorus

description: Data of Figure5 from the main manuscript
DOI: 10.6084/m9.figshare.20325450.v1
title: Data of Figure5 from Effect of stacking order on the vibration properties of bilayer black phosphorus

description: Data of Figure5 from the main manuscript
DOI: 10.6084/m9.figshare.20325453
title: Data of Figure2 from Effect of stacking order on the vibration properties of bilayer black phosphorus

description: Data of Figure2 from the main manuscript
DOI: 10.6084/m9.figshare.20325453.v1
title: Data of Figure2 from Effect of stacking order on the vibration properties of bilayer black phosphorus

description: Data of Figure2 from the main manuscript
DOI: 10.6084/m9.figshare.25268398
title: Plumage and eggshell colouration covary with the level of sex-specific parental contributions to nest building in birds

description: AbstractInterspecific variation in sex-specific contributions to prenatal parental care, including avian nest building, is becoming increasingly better understood as we amass more information on more species. We examined whether sex-specific nest building contributions covary with the colouration of parents and their eggs in 521 species of Western Palearctic birds. Having colourful plumage and laying colourful eggs are costly because of the deposition of pigments in feathers and eggs and/or forming costly nanostructural substrates in feathers, and so it might be expected that those costs covary with the costs of nest building at the level of individuals and/or across species to produce of a suite of codivergent traits. Using a phylogenetically informed approach, we tested the first hypothesis which was that species in which females alone invest energy building nests exhibit less sexual plumage dichromatism, which is costlier for females because they are investing energy having brighter plumage and building nests than in species exhibiting sexual plumage dichromatism and found comparative support for the opposite of this prediction. We then tested a second hypothesis that species in which females alone build nests lay more colourful, and costlier, eggs because the dual costs of building nests and laying colourful eggs can only be borne by higher quality individuals. As expected, we found that species in which females build nests alone or together with males are more likely to lay colourfully pigmented eggs relative to species in which only males build nests. Finally, stochastic character mapping provided evidence of the repeated evolution of female-only nest building. Interspecific sex differences in plumage colouration therefore covary in a complex manner with female pre- (nest building) and post-copulatory (egg production) investment in reproduction.Usage notesVariable names and descriptionsSpecies - scientific name of bird speciesNest_builder - nest builder sex (both, female, male, neither)Colour_dichromatism - sexual plumage dichromatism (yes/no)Egg_colur - egg colouration (blue, brown, white)Maculation - egg maculation (yes/no)Nest_design - nest design (open/enclosed)Mean_BM - average adult body mass in gramsClutch_size_mean - average clutch size
DOI: 10.6084/m9.figshare.25268398.v1
title: Plumage and eggshell colouration covary with the level of sex-specific parental contributions to nest building in birds

description: AbstractInterspecific variation in sex-specific contributions to prenatal parental care, including avian nest building, is becoming increasingly better understood as we amass more information on more species. We examined whether sex-specific nest building contributions covary with the colouration of parents and their eggs in 521 species of Western Palearctic birds. Having colourful plumage and laying colourful eggs are costly because of the deposition of pigments in feathers and eggs and/or forming costly nanostructural substrates in feathers, and so it might be expected that those costs covary with the costs of nest building at the level of individuals and/or across species to produce of a suite of codivergent traits. Using a phylogenetically informed approach, we tested the first hypothesis which was that species in which females alone invest energy building nests exhibit less sexual plumage dichromatism, which is costlier for females because they are investing energy having brighter plumage and building nests than in species exhibiting sexual plumage dichromatism and found comparative support for the opposite of this prediction. We then tested a second hypothesis that species in which females alone build nests lay more colourful, and costlier, eggs because the dual costs of building nests and laying colourful eggs can only be borne by higher quality individuals. As expected, we found that species in which females build nests alone or together with males are more likely to lay colourfully pigmented eggs relative to species in which only males build nests. Finally, stochastic character mapping provided evidence of the repeated evolution of female-only nest building. Interspecific sex differences in plumage colouration therefore covary in a complex manner with female pre- (nest building) and post-copulatory (egg production) investment in reproduction.Usage notesVariable names and descriptionsSpecies - scientific name of bird speciesNest_builder - nest builder sex (both, female, male, neither)Colour_dichromatism - sexual plumage dichromatism (yes/no)Egg_colur - egg colouration (blue, brown, white)Maculation - egg maculation (yes/no)Nest_design - nest design (open/enclosed)Mean_BM - average adult body mass in gramsClutch_size_mean - average clutch size
DOI: 10.6084/m9.figshare.20325456
title: Data of Figure6 from Effect of stacking order on the vibration properties of bilayer black phosphorus

description: Data of Figure6 from the main manuscript
DOI: 10.6084/m9.figshare.20325456.v1
title: Data of Figure6 from Effect of stacking order on the vibration properties of bilayer black phosphorus

description: Data of Figure6 from the main manuscript
DOI: 10.26300/r61c-cd60
title: Buoy Telemetry: Automated Quality Control
DOI: 10.6084/m9.figshare.16655604
title: Additional file 1 of Transcriptome and metabolome analysis reveals anthocyanin biosynthesis pathway associated with ramie (Boehmeria nivea (L.) Gaud.) leaf color formation

description: Additional file 1 Table S1: Statistical results of comparison rate between reads and reference genome.
DOI: 10.6084/m9.figshare.16655604.v1
title: Additional file 1 of Transcriptome and metabolome analysis reveals anthocyanin biosynthesis pathway associated with ramie (Boehmeria nivea (L.) Gaud.) leaf color formation

description: Additional file 1 Table S1: Statistical results of comparison rate between reads and reference genome.
DOI: 10.6084/m9.figshare.11937018
title: Additional file 1 of Genome-based classification of Burkholderia cepacia complex provides new insight into its taxonomic status

description: Additional file 1. Complete list of the 116 strains used in this study with detailed information.
DOI: 10.6084/m9.figshare.11937018.v1
title: Additional file 1 of Genome-based classification of Burkholderia cepacia complex provides new insight into its taxonomic status

description: Additional file 1. Complete list of the 116 strains used in this study with detailed information.
DOI: 10.5281/zenodo.10694610
title: Comparison of Cropland Maps Derived from Land Cover Maps in Sub-Saharan Africa

description: This data repository provides the datasets associated with analysis conducted in Kerner et al. (2024), citation below.

The CSV file `intercomparison-results.csv` gives a table metrics for each of 11 land cover maps (plus a majority vote ensemble of all maps) evaluated using the reference dataset for each of 8 countries (Kenya, Rwanda, Uganda, Tanzania, Mali, Malawi, Togo, and Zambia). The reference datasets are provided as zip files. To ensure these datasets can be used for independent evaluation and comparison between maps in the future, the reference datasets should ONLY be used for final, independent evaluation of data products/model outputs; they should NOT be used for training models, tuning hyperparameters, or any other decisions during model/map development. 

The provided tif files contain the consensus maps (sum of all 11 maps) used to compute consensus statistics in Kerner et al. (2024).

Kerner, H., Nakalembe, C., Yang, A., Zvonkov, I., McWeeny, R., Tseng, G., and Becker-Reshef, I. (2024). How accurate are existing land cover maps for agriculture in Sub-Saharan Africa? Under review.
DOI: 10.26300/spvq-5693
title: Domoic Acid Data
DOI: 10.5281/zenodo.8048966
title: Comparison of Cropland Maps Derived from Land Cover Maps in Sub-Saharan Africa

description: This data repository provides the datasets associated with analysis conducted in Kerner et al. (2024), citation below.

The CSV file `intercomparison-results.csv` gives a table metrics for each of 11 land cover maps (plus a majority vote ensemble of all maps) evaluated using the reference dataset for each of 8 countries (Kenya, Rwanda, Uganda, Tanzania, Mali, Malawi, Togo, and Zambia). The reference datasets are provided as zip files. To ensure these datasets can be used for independent evaluation and comparison between maps in the future, the reference datasets should ONLY be used for final, independent evaluation of data products/model outputs; they should NOT be used for training models, tuning hyperparameters, or any other decisions during model/map development. 

The provided tif files contain the consensus maps (sum of all 11 maps) used to compute consensus statistics in Kerner et al. (2024).

Kerner, H., Nakalembe, C., Yang, A., Zvonkov, I., McWeeny, R., Tseng, G., and Becker-Reshef, I. (2024). How accurate are existing land cover maps for agriculture in Sub-Saharan Africa? Under review.
DOI: 10.5281/zenodo.8048967
title: Comparison of Cropland Maps Derived from Land Cover Maps in Sub-Saharan Africa

description: This data repository provides the datasets associated with analysis conducted in Kerner et al. (2023), citation below. The CSV file `intercomparison-results.csv` gives a table metrics for each of 11 land cover maps (plus a majority vote ensemble of all maps) evaluated using the reference dataset for each of 8 countries (Kenya, Rwanda, Uganda, Tanzania, Mali, Malawi, Togo, and Zambia). The reference datasets are provided as zip files. To ensure these datasets can be used for independent evaluation and comparison between maps in the future, the reference datasets should ONLY be used for final, independent evaluation of data products/model outputs; they should NOT be used for training models, tuning hyperparameters, or any other decisions during model/map development. The provided tif files contain the consensus maps (sum of all 11 maps) used to compute consensus statistics in Kerner et al. (2023). Kerner, H., Nakalembe, C., Yang, A., Zvonkov, I., McWeeny, R., Tseng, G., and Becker-Reshef, I. (2023). How accurate are existing land cover maps for agriculture in Sub-Saharan Africa? <em>Under review</em>.
DOI: 10.6084/m9.figshare.16655616
title: Additional file 5 of Transcriptome and metabolome analysis reveals anthocyanin biosynthesis pathway associated with ramie (Boehmeria nivea (L.) Gaud.) leaf color formation

description: Additional file 5 Table S3: GO functional analysis and enrichment classification.
DOI: 10.6084/m9.figshare.16655616.v1
title: Additional file 5 of Transcriptome and metabolome analysis reveals anthocyanin biosynthesis pathway associated with ramie (Boehmeria nivea (L.) Gaud.) leaf color formation

description: Additional file 5 Table S3: GO functional analysis and enrichment classification.
DOI: 10.6084/m9.figshare.16655625
title: Additional file 8 of Transcriptome and metabolome analysis reveals anthocyanin biosynthesis pathway associated with ramie (Boehmeria nivea (L.) Gaud.) leaf color formation

description: Additional file 8 Table S4: Primer sequences of qRT-PCR analyses.
DOI: 10.6084/m9.figshare.16655664
title: Additional file 2 of Runs of homozygosity analysis reveals consensus homozygous regions affecting production traits in Chinese Simmental beef cattle

description: Additional file 2:
DOI: 10.26300/kxpq-v574
title: Domoic Acid Locations
DOI: 10.6084/m9.figshare.16655625.v1
title: Additional file 8 of Transcriptome and metabolome analysis reveals anthocyanin biosynthesis pathway associated with ramie (Boehmeria nivea (L.) Gaud.) leaf color formation

description: Additional file 8 Table S4: Primer sequences of qRT-PCR analyses.
DOI: 10.26300/yjmt-7y37
title: Fish Trawl: Catch Data for Whale Rock and Fox Island
DOI: 10.6084/m9.figshare.8267093
title: Additional file 17: of Evolution and comparative genomics of the most common Trichoderma species

description: PKS, NRPS, PKS-NRPS hybrids and terpenoid synthases in Trichoderma. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.8267093.v1
title: Additional file 17: of Evolution and comparative genomics of the most common Trichoderma species

description: PKS, NRPS, PKS-NRPS hybrids and terpenoid synthases in Trichoderma. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.16655703
title: Additional file 1 of Genome-wide identification and characterization of the BES/BZR gene family in wheat and foxtail millet

description: Additional file 1.
DOI: 10.6084/m9.figshare.16655664.v1
title: Additional file 2 of Runs of homozygosity analysis reveals consensus homozygous regions affecting production traits in Chinese Simmental beef cattle

description: Additional file 2:
DOI: 10.6084/m9.figshare.8267099
title: Additional file 19: of Evolution and comparative genomics of the most common Trichoderma species

description: Location of orphan genes and orphan gene clusters on the chromosomes of T. reesei. (XLSX 40 kb)
DOI: 10.6084/m9.figshare.8267099.v1
title: Additional file 19: of Evolution and comparative genomics of the most common Trichoderma species

description: Location of orphan genes and orphan gene clusters on the chromosomes of T. reesei. (XLSX 40 kb)
DOI: 10.26300/dyw0-hm38
title: Fish Trawl: Fox Island and Whale Rock Data 2006-2017
DOI: 10.6084/m9.figshare.16655703.v1
title: Additional file 1 of Genome-wide identification and characterization of the BES/BZR gene family in wheat and foxtail millet

description: Additional file 1.
DOI: 10.6084/m9.figshare.23806206
title: Data.zip

description: <b>：</b>温度和土壤湿度变化下的细菌和真菌数据;二氧化碳示踪剂分子和转化DOM组分。
DOI: 10.6084/m9.figshare.23806206.v5
title: Data.zip

description: <b>：</b>温度和土壤湿度变化下的细菌和真菌数据;二氧化碳示踪剂分子和转化DOM组分。
DOI: 10.6084/m9.figshare.23806206.v4
title: Data.zip

description: <b>Data: </b>bacteria, and fungi data under changes in temperature and soil moisture; Carbon dioxide tracer molecules and the transformation DOM components.
DOI: 10.6084/m9.figshare.16655718
title: Additional file 6 of Genome-wide identification and characterization of the BES/BZR gene family in wheat and foxtail millet

description: Additional file 6.
DOI: 10.6073/pasta/cc95c24ae7f5a272a53a37e4b19e3a59
title: Warming-El Nino-Nitrogen Deposition Experiment (WENNDEx): Nematodes

description: Multi-factor experiments suggest that interactions among environmental changes commonly influence biodiversity and community composition. However, most field experiments manipulate only single factors. Soil food webs are critical to ecosystem health and may be particularly sensitive to interactions among environmental changes that include soil warming, eutrophication, and altered precipitation. Here, we asked how environmental changes interacted to alter soil nematode communities in a northern Chihuahuan Desert grassland. Factorial manipulations of nitrogen, winter rainfall, and nighttime warming matched predictions for regional environmental change. Warming reduced nematode diversity by 25% and genus-level richness by 32%, but declines dissipated with additional winter rain, suggesting that warming effects occurred via drying. Interactions between precipitation and nitrogen also altered nematode community composition, but only weakly affected total nematode abundance, indicating that most change involved reordering of species abundances. Specifically, under ambient precipitation, nitrogen fertilizer reduced bacterivores by 68% and herbivores by 73%, but did not affect fungivores. In contrast, under winter rain addition, nitrogen fertilization increased bacterivores by 95%, did not affect herbivores, and doubled fungivore abundance. Rain can reduce soil nitrogen availability and increase turnover in the microbial loop, potentially promoting the recovery of nematode populations overwhelmed by nitrogen eutrophication. Nematode communities were not tightly coupled to plant community composition and may instead track microbes, including biocrusts or decomposers. Our results highlight the importance of interactions among environmental change stressors for shaping the composition and function of soil food webs in drylands.
DOI: 10.6084/m9.figshare.8267129
title: Additional file 4: of Evolution and comparative genomics of the most common Trichoderma species

description: Protein sequences of T. hamatum, fasta format. (TXT 5440 kb)
DOI: 10.6084/m9.figshare.16655718.v1
title: Additional file 6 of Genome-wide identification and characterization of the BES/BZR gene family in wheat and foxtail millet

description: Additional file 6.
DOI: 10.6084/m9.figshare.8267129.v1
title: Additional file 4: of Evolution and comparative genomics of the most common Trichoderma species

description: Protein sequences of T. hamatum, fasta format. (TXT 5440 kb)
DOI: 10.26300/300t-rr27
title: Fish Trawl: Fox Island and Whale Rock Temps
DOI: 10.6084/m9.figshare.16655775
title: Additional file 7 of Transcriptome profiling of Malus sieversii under freezing stress after being cold-acclimated

description: Additional file 7: Table S2. Details regarding fusion gene.
DOI: 10.6084/m9.figshare.11937309
title: Additional file 2 of The iTRAQ-based chloroplast proteomic analysis of Triticum aestivum L. leaves subjected to drought stress and 5-aminolevulinic acid alleviation reveals several proteins involved in the protection of photosynthesis

description: Additional file 2: Supplementary TableÂ 2. The identified proteins in chloroplast extracted from wheat leaves under different treatments.
DOI: 10.26300/ndpa-hg12
title: Landsat Satellite Coordinates
DOI: 10.6084/m9.figshare.11937309.v1
title: Additional file 2 of The iTRAQ-based chloroplast proteomic analysis of Triticum aestivum L. leaves subjected to drought stress and 5-aminolevulinic acid alleviation reveals several proteins involved in the protection of photosynthesis

description: Additional file 2: Supplementary TableÂ 2. The identified proteins in chloroplast extracted from wheat leaves under different treatments.
DOI: 10.6084/m9.figshare.11937390.v1
title: Additional file 2 of Insight into unique somitogenesis of yak (Bos grunniens) with one additional thoracic vertebra

description: Additional file 2. Primers used to amplify the sequences harboring the final seven loci.
DOI: 10.6084/m9.figshare.11937390
title: Additional file 2 of Insight into unique somitogenesis of yak (Bos grunniens) with one additional thoracic vertebra

description: Additional file 2. Primers used to amplify the sequences harboring the final seven loci.
DOI: 10.26300/bjw0-4968
title: Landsat Satellite Surface Temperature
DOI: 10.6084/m9.figshare.16655772
title: Additional file 6 of Transcriptome profiling of Malus sieversii under freezing stress after being cold-acclimated

description: Additional file 6: Table S1. Details regarding AS.