cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20444940.v1
title: R code for trait PCA analysis from Long-term changes in avian biomass and functional diversity within disturbed and undisturbed Amazonian rainforest

description: Recent long-term studies in protected areas have revealed the loss of biodiversity, yet the ramifications for ecosystem health and resilience remain unknown. Here, we investigate how the loss of understory birds, in the lowest stratum of the forest, affects avian biomass and functional diversity in the Amazon rainforest. Across approximately 30 years in the Biological Dynamics of Forest Fragments Project, we used a historical baseline of avian communities to contrast the avian communities in today's primary forest with those in modern disturbed habitat. We found that in primary rainforest, the reduced abundance of insectivorous species led to reduced functional diversity, but no reduction of biomass, indicating that species with similar functional traits are less likely to coexist in modern primary forests. Because today's forests contain fewer functionally redundant species—those with similar traits—we argue that avian communities in modern primary Amazonian rainforests are less resilient, which may ultimately disrupt the ecosystem in dynamic and unforeseen ways.
DOI: 10.6084/m9.figshare.20444949.v1
title: R code for biomass trends from Long-term changes in avian biomass and functional diversity within disturbed and undisturbed Amazonian rainforest

description: Recent long-term studies in protected areas have revealed the loss of biodiversity, yet the ramifications for ecosystem health and resilience remain unknown. Here, we investigate how the loss of understory birds, in the lowest stratum of the forest, affects avian biomass and functional diversity in the Amazon rainforest. Across approximately 30 years in the Biological Dynamics of Forest Fragments Project, we used a historical baseline of avian communities to contrast the avian communities in today's primary forest with those in modern disturbed habitat. We found that in primary rainforest, the reduced abundance of insectivorous species led to reduced functional diversity, but no reduction of biomass, indicating that species with similar functional traits are less likely to coexist in modern primary forests. Because today's forests contain fewer functionally redundant species—those with similar traits—we argue that avian communities in modern primary Amazonian rainforests are less resilient, which may ultimately disrupt the ecosystem in dynamic and unforeseen ways.
DOI: 10.6084/m9.figshare.20444943
title: R code for functional distinctiveness analysis from Long-term changes in avian biomass and functional diversity within disturbed and undisturbed Amazonian rainforest

description: Recent long-term studies in protected areas have revealed the loss of biodiversity, yet the ramifications for ecosystem health and resilience remain unknown. Here, we investigate how the loss of understory birds, in the lowest stratum of the forest, affects avian biomass and functional diversity in the Amazon rainforest. Across approximately 30 years in the Biological Dynamics of Forest Fragments Project, we used a historical baseline of avian communities to contrast the avian communities in today's primary forest with those in modern disturbed habitat. We found that in primary rainforest, the reduced abundance of insectivorous species led to reduced functional diversity, but no reduction of biomass, indicating that species with similar functional traits are less likely to coexist in modern primary forests. Because today's forests contain fewer functionally redundant species—those with similar traits—we argue that avian communities in modern primary Amazonian rainforests are less resilient, which may ultimately disrupt the ecosystem in dynamic and unforeseen ways.
DOI: 10.6084/m9.figshare.20444949
title: R code for biomass trends from Long-term changes in avian biomass and functional diversity within disturbed and undisturbed Amazonian rainforest

description: Recent long-term studies in protected areas have revealed the loss of biodiversity, yet the ramifications for ecosystem health and resilience remain unknown. Here, we investigate how the loss of understory birds, in the lowest stratum of the forest, affects avian biomass and functional diversity in the Amazon rainforest. Across approximately 30 years in the Biological Dynamics of Forest Fragments Project, we used a historical baseline of avian communities to contrast the avian communities in today's primary forest with those in modern disturbed habitat. We found that in primary rainforest, the reduced abundance of insectivorous species led to reduced functional diversity, but no reduction of biomass, indicating that species with similar functional traits are less likely to coexist in modern primary forests. Because today's forests contain fewer functionally redundant species—those with similar traits—we argue that avian communities in modern primary Amazonian rainforests are less resilient, which may ultimately disrupt the ecosystem in dynamic and unforeseen ways.
DOI: 10.6084/m9.figshare.20444952
title: BDFFP-FD_PCA.rtf from Long-term changes in avian biomass and functional diversity within disturbed and undisturbed Amazonian rainforest

description: Recent long-term studies in protected areas have revealed the loss of biodiversity, yet the ramifications for ecosystem health and resilience remain unknown. Here, we investigate how the loss of understory birds, in the lowest stratum of the forest, affects avian biomass and functional diversity in the Amazon rainforest. Across approximately 30 years in the Biological Dynamics of Forest Fragments Project, we used a historical baseline of avian communities to contrast the avian communities in today's primary forest with those in modern disturbed habitat. We found that in primary rainforest, the reduced abundance of insectivorous species led to reduced functional diversity, but no reduction of biomass, indicating that species with similar functional traits are less likely to coexist in modern primary forests. Because today's forests contain fewer functionally redundant species—those with similar traits—we argue that avian communities in modern primary Amazonian rainforests are less resilient, which may ultimately disrupt the ecosystem in dynamic and unforeseen ways.
DOI: 10.6084/m9.figshare.20444943.v1
title: R code for functional distinctiveness analysis from Long-term changes in avian biomass and functional diversity within disturbed and undisturbed Amazonian rainforest

description: Recent long-term studies in protected areas have revealed the loss of biodiversity, yet the ramifications for ecosystem health and resilience remain unknown. Here, we investigate how the loss of understory birds, in the lowest stratum of the forest, affects avian biomass and functional diversity in the Amazon rainforest. Across approximately 30 years in the Biological Dynamics of Forest Fragments Project, we used a historical baseline of avian communities to contrast the avian communities in today's primary forest with those in modern disturbed habitat. We found that in primary rainforest, the reduced abundance of insectivorous species led to reduced functional diversity, but no reduction of biomass, indicating that species with similar functional traits are less likely to coexist in modern primary forests. Because today's forests contain fewer functionally redundant species—those with similar traits—we argue that avian communities in modern primary Amazonian rainforests are less resilient, which may ultimately disrupt the ecosystem in dynamic and unforeseen ways.
DOI: 10.6084/m9.figshare.20444952.v1
title: BDFFP-FD_PCA.rtf from Long-term changes in avian biomass and functional diversity within disturbed and undisturbed Amazonian rainforest

description: Recent long-term studies in protected areas have revealed the loss of biodiversity, yet the ramifications for ecosystem health and resilience remain unknown. Here, we investigate how the loss of understory birds, in the lowest stratum of the forest, affects avian biomass and functional diversity in the Amazon rainforest. Across approximately 30 years in the Biological Dynamics of Forest Fragments Project, we used a historical baseline of avian communities to contrast the avian communities in today's primary forest with those in modern disturbed habitat. We found that in primary rainforest, the reduced abundance of insectivorous species led to reduced functional diversity, but no reduction of biomass, indicating that species with similar functional traits are less likely to coexist in modern primary forests. Because today's forests contain fewer functionally redundant species—those with similar traits—we argue that avian communities in modern primary Amazonian rainforests are less resilient, which may ultimately disrupt the ecosystem in dynamic and unforeseen ways.
DOI: 10.6084/m9.figshare.20444955.v1
title: Table with all data for all species used in the analysis from Long-term changes in avian biomass and functional diversity within disturbed and undisturbed Amazonian rainforest

description: Recent long-term studies in protected areas have revealed the loss of biodiversity, yet the ramifications for ecosystem health and resilience remain unknown. Here, we investigate how the loss of understory birds, in the lowest stratum of the forest, affects avian biomass and functional diversity in the Amazon rainforest. Across approximately 30 years in the Biological Dynamics of Forest Fragments Project, we used a historical baseline of avian communities to contrast the avian communities in today's primary forest with those in modern disturbed habitat. We found that in primary rainforest, the reduced abundance of insectivorous species led to reduced functional diversity, but no reduction of biomass, indicating that species with similar functional traits are less likely to coexist in modern primary forests. Because today's forests contain fewer functionally redundant species—those with similar traits—we argue that avian communities in modern primary Amazonian rainforests are less resilient, which may ultimately disrupt the ecosystem in dynamic and unforeseen ways.
DOI: 10.6084/m9.figshare.20444940
title: R code for trait PCA analysis from Long-term changes in avian biomass and functional diversity within disturbed and undisturbed Amazonian rainforest

description: Recent long-term studies in protected areas have revealed the loss of biodiversity, yet the ramifications for ecosystem health and resilience remain unknown. Here, we investigate how the loss of understory birds, in the lowest stratum of the forest, affects avian biomass and functional diversity in the Amazon rainforest. Across approximately 30 years in the Biological Dynamics of Forest Fragments Project, we used a historical baseline of avian communities to contrast the avian communities in today's primary forest with those in modern disturbed habitat. We found that in primary rainforest, the reduced abundance of insectivorous species led to reduced functional diversity, but no reduction of biomass, indicating that species with similar functional traits are less likely to coexist in modern primary forests. Because today's forests contain fewer functionally redundant species—those with similar traits—we argue that avian communities in modern primary Amazonian rainforests are less resilient, which may ultimately disrupt the ecosystem in dynamic and unforeseen ways.
DOI: 10.6084/m9.figshare.20444955
title: Table with all data for all species used in the analysis from Long-term changes in avian biomass and functional diversity within disturbed and undisturbed Amazonian rainforest

description: Recent long-term studies in protected areas have revealed the loss of biodiversity, yet the ramifications for ecosystem health and resilience remain unknown. Here, we investigate how the loss of understory birds, in the lowest stratum of the forest, affects avian biomass and functional diversity in the Amazon rainforest. Across approximately 30 years in the Biological Dynamics of Forest Fragments Project, we used a historical baseline of avian communities to contrast the avian communities in today's primary forest with those in modern disturbed habitat. We found that in primary rainforest, the reduced abundance of insectivorous species led to reduced functional diversity, but no reduction of biomass, indicating that species with similar functional traits are less likely to coexist in modern primary forests. Because today's forests contain fewer functionally redundant species—those with similar traits—we argue that avian communities in modern primary Amazonian rainforests are less resilient, which may ultimately disrupt the ecosystem in dynamic and unforeseen ways.
DOI: 10.6084/m9.figshare.20444964
title: compare_q_qa.zip from Wave-in-ice: theoretical bases and field observations

description: Attenuation data for Figure 4(a) and 4(b)
DOI: 10.6084/m9.figshare.20444964.v1
title: compare_q_qa.zip from Wave-in-ice: theoretical bases and field observations

description: Attenuation data for Figure 4(a) and 4(b)
DOI: 10.6084/m9.figshare.20444967
title: solve_kr_ki.zip from Wave-in-ice: theoretical bases and field observations

description: Dispersion relation solver
DOI: 10.6084/m9.figshare.20444967.v1
title: solve_kr_ki.zip from Wave-in-ice: theoretical bases and field observations

description: Dispersion relation solver
DOI: 10.5519/qd.axfo9kaf
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.34740/kaggle/dsv/4039177
title: AutoXGB
DOI: 10.34740/kaggle/dsv/4039194
title: Dutch News Articles
DOI: 10.5281/zenodo.6970619
title: A Composite Catalog of Damaging Earthquakes for Mainland China

description: The Mainland China Composite Damaging Earthquake Catalog (MCCDE-CAT) was developed by Li et al. (2021). It contains three databases: Earthquake damage database, Intensity map database, Population exposure database, which for 493 damaging earthquakes that occurred in Mainland China during 1950-2019. Citation: "Y. Li, Z. Zhang, D. Xin, A Composite Catalog of Damaging Earthquakes for Mainland China, Seismol. Res. Lett. 92(6) (2021) 3767-3777. https://doi.org/10.1785/0220210090"
DOI: 10.5281/zenodo.4964445
title: A Composite Catalog of Damaging Earthquakes for Mainland China

description: The Mainland China Composite Damaging Earthquake Catalog (MCCDE-CAT) was developed by Li et al. (2021). It contains three databases: Earthquake damage database, Intensity map database, Population exposure database, which for 493 damaging earthquakes that occurred in Mainland China during 1950-2019. Citation: "Y. Li, Z. Zhang, D. Xin, A Composite Catalog of Damaging Earthquakes for Mainland China, Seismol. Res. Lett. 92(6) (2021) 3767-3777. https://doi.org/10.1785/0220210090"
DOI: 10.5281/zenodo.6948625
title: Magnitude and determinants of road traffic accidents in North Gondar Zone, Amhara Region, Ethiopia

description: Number and types of a road traffic accidents in relation to road and road user, environmental and time related and vehicle related factors
DOI: 10.34740/kaggle/dsv/2914166
title: Institute Graduation Rate Prediction Dataset EDM
DOI: 10.6084/m9.figshare.20445030
title: Data for analysis from Physiological arousal explains infant gaze following in various social contexts

description: Heart rate for each phase and gaze following behaviour for each trial
DOI: 10.34740/kaggle/dsv/4039276
title: Classification-OF-SPECIES(9)
DOI: 10.6084/m9.figshare.20445030.v1
title: Data for analysis from Physiological arousal explains infant gaze following in various social contexts

description: Heart rate for each phase and gaze following behaviour for each trial
DOI: 10.6084/m9.figshare.20445036
title: Code from Matesanz et al. from Effects of parental drought on offspring fitness vary among populations of a crop wild relative

description: R code used for data analyses
DOI: 10.6084/m9.figshare.20445036.v1
title: Code from Matesanz et al. from Effects of parental drought on offspring fitness vary among populations of a crop wild relative

description: R code used for data analyses
DOI: 10.6084/m9.figshare.20445042
title: Data from Matesanz et al. from Effects of parental drought on offspring fitness vary among populations of a crop wild relative

description: Spreadsheet with data and metadata
DOI: 10.6084/m9.figshare.20445042.v1
title: Data from Matesanz et al. from Effects of parental drought on offspring fitness vary among populations of a crop wild relative

description: Spreadsheet with data and metadata
DOI: 10.5519/qd.4gcz196c
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1001 records)
DOI: 10.5519/qd.s9pg7orr
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1001 records)
DOI: 10.34740/kaggle/dsv/4039363
title: 6 ovarian cancer datasets
DOI: 10.5519/qd.tmpwmb0c
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (676866 records)
DOI: 10.5519/qd.93p1rdil
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (676817 records)
DOI: 10.34740/kaggle/dsv/4039448
title: YouTube Daily
DOI: 10.6084/m9.figshare.20445054
title: Data.xlsx

description: Dataset of 'Association between the person-centered maternity care experience and mental health after delivery in Dhading, Nepal: A cross-sectional study.' <br>
DOI: 10.6084/m9.figshare.20445054.v1
title: Data.xlsx

description: Dataset of 'Association between the person-centered maternity care experience and mental health after delivery in Dhading, Nepal: A cross-sectional study.' <br>
DOI: 10.34740/kaggle/dsv/3828105
title: Earthquakes Time-Series Analysis (NSFE_SAC)
DOI: 10.6084/m9.figshare.20445085
title: Manuscript data from Prevalence and mechanisms of environmental hyperoxia-induced thermal tolerance in fishes

description: Supporting data for manuscript
DOI: 10.6084/m9.figshare.20445085.v1
title: Manuscript data from Prevalence and mechanisms of environmental hyperoxia-induced thermal tolerance in fishes

description: Supporting data for manuscript
DOI: 10.6084/m9.figshare.20445103
title: Raw data summary from Optogenetic manipulation of cyclic guanosine monophosphate to probe phosphodiesterase activities in megakaryocytes

description: Cyclic guanosine monophosphate (cGMP) signalling plays a fundamental role in many cell types including platelets. cGMP has been implicated in platelet formation, but mechanistic detail about its spatio-temporal regulation in megakaryocytes (MKs) is lacking. Optogenetics is a technique which allows spatio-temporal manipulation of molecular events in living cells or organisms. We took advantage of this method and expressed a photo-activated guanylyl cyclase, <i>Blastocladiella emersonii</i> Cyclase opsin (<i>Be</i>Cyclop), after viral-mediated gene transfer in bone marrow (BM)-derived MKs to precisely light-modulate cGMP levels. <i>Be</i>Cyclop-MKs showed a significantly increased cGMP concentration after illumination, which was strongly dependent on phosphodiesterase (PDE) 5 activity. This finding was corroborated by real-time imaging of cGMP signals which revealed that pharmacological PDE5 inhibition also potentiated nitric oxide-triggered cGMP generation in BM MKs. In summary, we established for the first-time optogenetics in primary MKs and show that PDE5 is the predominant PDE regulating cGMP levels in MKs. These findings also demonstrate that optogenetics allows for the precise manipulation of MK biology.
DOI: 10.6084/m9.figshare.20445103.v1
title: Raw data summary from Optogenetic manipulation of cyclic guanosine monophosphate to probe phosphodiesterase activities in megakaryocytes

description: Cyclic guanosine monophosphate (cGMP) signalling plays a fundamental role in many cell types including platelets. cGMP has been implicated in platelet formation, but mechanistic detail about its spatio-temporal regulation in megakaryocytes (MKs) is lacking. Optogenetics is a technique which allows spatio-temporal manipulation of molecular events in living cells or organisms. We took advantage of this method and expressed a photo-activated guanylyl cyclase, <i>Blastocladiella emersonii</i> Cyclase opsin (<i>Be</i>Cyclop), after viral-mediated gene transfer in bone marrow (BM)-derived MKs to precisely light-modulate cGMP levels. <i>Be</i>Cyclop-MKs showed a significantly increased cGMP concentration after illumination, which was strongly dependent on phosphodiesterase (PDE) 5 activity. This finding was corroborated by real-time imaging of cGMP signals which revealed that pharmacological PDE5 inhibition also potentiated nitric oxide-triggered cGMP generation in BM MKs. In summary, we established for the first-time optogenetics in primary MKs and show that PDE5 is the predominant PDE regulating cGMP levels in MKs. These findings also demonstrate that optogenetics allows for the precise manipulation of MK biology.
DOI: 10.6084/m9.figshare.20445112
title: Primers used for in situ hybridization probes from In the footsteps of sea stars: deciphering the catalogue of proteins involved in underwater temporary adhesion

description: Sea star footprint proteins (Sfps) of A. rubens: expression pattern, DNA and protein sequences and primers used for in situ probe synthesis.
DOI: 10.6084/m9.figshare.20445112.v1
title: Primers used for in situ hybridization probes from In the footsteps of sea stars: deciphering the catalogue of proteins involved in underwater temporary adhesion

description: Sea star footprint proteins (Sfps) of A. rubens: expression pattern, DNA and protein sequences and primers used for in situ probe synthesis.
DOI: 10.6084/m9.figshare.20445115
title: Primers and Sanger sequencing results from In the footsteps of sea stars: deciphering the catalogue of proteins involved in underwater temporary adhesion

description: Original A. rubens transcriptome sequences, primers used to elongate the Sea star footprint proteins (Sfps) sequences and Sanger sequencing results.
DOI: 10.6084/m9.figshare.20445115.v1
title: Primers and Sanger sequencing results from In the footsteps of sea stars: deciphering the catalogue of proteins involved in underwater temporary adhesion

description: Original A. rubens transcriptome sequences, primers used to elongate the Sea star footprint proteins (Sfps) sequences and Sanger sequencing results.
DOI: 10.6084/m9.figshare.20445118.v1
title: Protein aminoacid composition and predicted posttranslational modifications from In the footsteps of sea stars: deciphering the catalogue of proteins involved in underwater temporary adhesion

description: Amino acid composition and predicted posttranslational modifications of Sea star footprint proteins (Sfps).
DOI: 10.6084/m9.figshare.20445118
title: Protein aminoacid composition and predicted posttranslational modifications from In the footsteps of sea stars: deciphering the catalogue of proteins involved in underwater temporary adhesion

description: Amino acid composition and predicted posttranslational modifications of Sea star footprint proteins (Sfps).
DOI: 10.34740/kaggle/dsv/4039529
title: 6 ovarian cancer datasets