cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.88npw5
title: Occurrence Download

description: A dataset containing 1077 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lecania fuscella (Schaer.) A.Massal., Lepraria elobata Tønsberg)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 1077 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0168253-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111123864
title: Business contract, UT 1599-26

description: [Text Description:] Business contract. ❧ [Text or Publication Number Note:] UT 1599-26 ❧ [Excavation Description:] Senkereh ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Large clay tablet, beige center with pink-orange edges. LABEL: "1599" in black ink, "26" in red ink. 7.5 x 5cm.
DOI: 10.25549/inscriptifact-ouc111290496
title: Tombstone, Stele Inscribed, Incised, IAA 1942-873

description: [Text Description:] Of Zakarmilk ❧ [Text or Publication Number Note:] Akhzib 3; IAA 1942-873 ❧ [Excavation Description:] Found at Akhziv ❧ [Medium:] Stone ❧ [Script Note:] Phoenician ❧ [Physical Object Description:] Sandstone, 78cm x 38cm, tombstone, incised ❧
DOI: 10.15468/dl.shvrbg
title: Occurrence Download

description: A dataset containing 3527 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mergus serrator Linnaeus, 1758",
 "Year 2011-2018"
 ]
}

 The dataset includes 3527 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0177706-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111290495
title: Tombstone, Stele Inscribed, Incised, IAA 1942-873

description: [Text Description:] Of Zakarmilk ❧ [Text or Publication Number Note:] Akhzib 3; IAA 1942-873 ❧ [Excavation Description:] Found at Akhziv ❧ [Medium:] Stone ❧ [Script Note:] Phoenician ❧ [Physical Object Description:] Sandstone, 78cm x 38cm, tombstone, incised ❧
DOI: 10.25549/inscriptifact-ouc111123842
title: Business contract, UT 1599-26

description: [Text Description:] Business contract. ❧ [Text or Publication Number Note:] UT 1599-26 ❧ [Excavation Description:] Senkereh ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Large clay tablet, beige center with pink-orange edges. LABEL: "1599" in black ink, "26" in red ink. 7.5 x 5cm.
DOI: 10.25549/inscriptifact-ouc111123870
title: Business contract, UT 1599-26

description: [Text Description:] Business contract. ❧ [Text or Publication Number Note:] UT 1599-26 ❧ [Excavation Description:] Senkereh ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Large clay tablet, beige center with pink-orange edges. LABEL: "1599" in black ink, "26" in red ink. 7.5 x 5cm.
DOI: 10.25549/inscriptifact-ouc111123847
title: Business contract, UT 1599-26

description: [Text Description:] Business contract. ❧ [Text or Publication Number Note:] UT 1599-26 ❧ [Excavation Description:] Senkereh ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Large clay tablet, beige center with pink-orange edges. LABEL: "1599" in black ink, "26" in red ink. 7.5 x 5cm.
DOI: 10.25549/inscriptifact-ouc111123850
title: Business contract, UT 1599-26

description: [Text Description:] Business contract. ❧ [Text or Publication Number Note:] UT 1599-26 ❧ [Excavation Description:] Senkereh ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Large clay tablet, beige center with pink-orange edges. LABEL: "1599" in black ink, "26" in red ink. 7.5 x 5cm.
DOI: 10.25549/inscriptifact-ouc111290552
title: Tombstone, Stele Inscribed, Incised, IAA 1942-873

description: [Text Description:] Of Zakarmilk ❧ [Text or Publication Number Note:] Akhzib 3; IAA 1942-873 ❧ [Excavation Description:] Found at Akhziv ❧ [Medium:] Stone ❧ [Script Note:] Phoenician ❧ [Physical Object Description:] Sandstone, 78cm x 38cm, tombstone, incised ❧
DOI: 10.25549/inscriptifact-ouc111290581
title: Tombstone, Stele Inscribed, Incised, IAA 1942-873

description: [Text Description:] Of Zakarmilk ❧ [Text or Publication Number Note:] Akhzib 3; IAA 1942-873 ❧ [Excavation Description:] Found at Akhziv ❧ [Medium:] Stone ❧ [Script Note:] Phoenician ❧ [Physical Object Description:] Sandstone, 78cm x 38cm, tombstone, incised ❧
DOI: 10.15468/dl.a5jvae
title: Occurrence Download

description: A dataset containing 1108 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diadema savignyi (Audouin, 1809)"
 ]
}

 The dataset includes 1108 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008830-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bj57qj
title: Occurrence Download

description: A dataset containing 325 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Ammospermophilus harrisii (Audubon & Bachman, 1854)"
 ]
}

 The dataset includes 325 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008829-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/fxax-0v83
title: Route Optimization Dataset for Large-Scale AGV Systems with 1000 units in Japanese Logistics Warehouses

description: This study proposes a new approach for optimizing the routing of 1,000 Automated Guided Vehicles (AGVs) in large-scale logistics warehouses using Quantum Annealing (QA). As logistics operations grow, efficient AGV route planning is essential to ensure smooth, safe, and time-efficient transportation, especially in high-density AGV environments. By utilizing quantum mechanics, QA effectively addresses the complex challenges inherent in large-scale AGV management.
DOI: 10.15468/dl.24s43c
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nephus binaevatus (Mulsant, 1850)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 38 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008831-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25810/c862-0e81.83
title: US Television Coverage of Climate Change or Global Warming, 2000-2025 - February 2025

description: The Media and Climate Change Observatory Data monitors 130 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.5066/f769722z
title: Acoustic telemetry detection data for acoustic-tagged lake sturgeon (Acipenser fulvescens) in the Lake Huron-to-Lake Erie corridor

description: Acoustic telemetry is a popular tool for the study of fish spatial ecology. In acoustic telemetry, fish are captured, surgically implanted with an acoustic transmitter or &quot;tag&quot;, and then released back into the environment. Networks of autonomous, stationary receivers then are used to track the movements of tagged individuals over long periods of time (greater than 1 year). Each acoustic receiver records the date, time, and unique transmitter code (or ID) for each acoustic tag detection. This data set contains detection data for 282 acoustic-tagged lake sturgeon that were captured and released into the Detroit River, St. Clair River, and Lake Huron between 2011 and 2015. Movements of acoustic-tagged individuals were tracked in the Detroit and St. Clair rivers, Lake St. Clair, and in lakes Huron and Erie.
DOI: 10.6084/m9.figshare.27199401
title: 241009_feature_counts.csv

description: Bone marrow-derived macrophages (BMDMs) were generated by harvesting cells from the bone marrow of PTPN2 wild-type (WT), heterozygous (HET) and knockout (KO) mice, and growing them<i> ex vivo</i>. They were differentiated into macrophages by stimulating them with 30 ng/mL recombinant murine M-CSF for 7 days. BMDMs were either maintained as naive macrophages (M0) or polarized towards the M1 pro-inflammatory phenotype with IFN-ɣ and lipopolysaccharide (LPS), or towards the M2 anti-inflammatory phenotype using IL-4 for 24 hours. Macrophages were then harvested from the plates and counted for downstream experiments.RNA from purified BMDMs was isolated with TRIzol and samples were subjected to RNA-sequencing (RNA-Seq) using an Illumina HiSeq 2500. Transcript abundances were quantified with Kallisto v0.41.1 using paired-end reads pseudo-aligned to the mouse transcriptome (GENCODE M17). Differential gene expression analysis was performed by importing Kallisto results with tximport v1.6.0, followed by DESeq2 v1.18.1. InnateDB and gene ontology (GO) were used for downstream analysis to identify pathways and biological processes enriched in specific populations.
DOI: 10.15468/dl.7jbk4y
title: Occurrence Download

description: A dataset containing 81931 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brevoortia patronus Goode, 1878"
 ]
}

 The dataset includes 81931 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008821-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.y5bgq517
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5281/zenodo.14762863
title: L-DOPA induces spatially discrete gene expression changes in the forebrain of mice with progressive loss of dopaminergic neurons

description: This zenodo project contains data from the project aimed at deciphering L-DOPA-induced changes in gene expression in the forebrain of dopamine-depleted mice (a model of Parkinson's disease), using spatial transcriptomics.

The dataset consists of the following files:

Phenotypic datasets

genotypes.csv - list of mouse used in the experiment and their most important characteristicsnor_boris_input.csv - data obtained from the Novel Object Recognition (NOR) test, used for analyses in Rnor-objects.xlsx - schedule for placement of objects in the NOR test.mpg files - raw files recorded for each mouse during the NOR testnor_preludium_2_cohorts.boris - file with the analysis of the NOR test in the BORIS softwarerotarod_preludium.xlsx - results of the accelerating rotarod testopen-field.csv - results of open field testoss-joint.csv - results of the operant sensation seeking test.xlsx files with "RunStatistics" phrase in the filename - results from CatWalk XT sessionsfiles starting with "weight_" - weight measurements  for each mouse in the 2 cohorts, for each of two experiment periods recorded separately.tif files with the phrase "gamma" in the filename - fluorescent microscope images of brain sections with green signal derived from the presence of TH

Transcriptomic data

.RData files - large R files with SeuratObjects, used for analysis.tif files named after samples (e.g., "S5023Nr1.tif") - bright field microscope images of forebrain H&E-stained sections used in spatial transcriptomic analyses and visualization.json files - derived from .tif H&E tissue images and created with Loupe Browser; used in spaceranger analysesresults.tsv - list of 121 differentially expressed genes across different clusters (181 records in total)table_for_heatmap_reads.csv - table with data used for creating heatmapscluster_markers.csv - list of marker genes for each cluster, a result of FindAllMarker function in the Seurat software.pdf files - depict spot assignment to clusters on a UMAP and corresponding to their spatial coordinates on the H&E sections imagesfiles_and_samples.csv - a table connecting mice IDs, sample IDs and slide IDs
DOI: 10.5281/zenodo.14762864
title: L-DOPA induces spatially discrete gene expression changes in the forebrain of mice with progressive loss of dopaminergic neurons

description: This zenodo project contains data from the project aimed at deciphering L-DOPA-induced changes in gene expression in the forebrain of dopamine-depleted mice (a model of Parkinson's disease), using spatial transcriptomics.

The dataset consists of the following files:

Phenotypic datasets

genotypes.csv - list of mouse used in the experiment and their most important characteristicsnor_boris_input.csv - data obtained from the Novel Object Recognition (NOR) test, used for analyses in Rnor-objects.xlsx - schedule for placement of objects in the NOR test.mpg files - raw files recorded for each mouse during the NOR testnor_preludium_2_cohorts.boris - file with the analysis of the NOR test in the BORIS softwarerotarod_preludium.xlsx - results of the accelerating rotarod testopen-field.csv - results of open field testoss-joint.csv - results of the operant sensation seeking test.xlsx files with "RunStatistics" phrase in the filename - results from CatWalk XT sessionsfiles starting with "weight_" - weight measurements  for each mouse in the 2 cohorts, for each of two experiment periods recorded separately.tif files with the phrase "gamma" in the filename - fluorescent microscope images of brain sections with green signal derived from the presence of TH

Transcriptomic data

.RData files - large R files with SeuratObjects, used for analysis.tif files named after samples (e.g., "S5023Nr1.tif") - bright field microscope images of forebrain H&E-stained sections used in spatial transcriptomic analyses and visualization.json files - derived from .tif H&E tissue images and created with Loupe Browser; used in spaceranger analysesresults.tsv - list of 121 differentially expressed genes across different clusters (181 records in total)table_for_heatmap_reads.csv - table with data used for creating heatmapscluster_markers.csv - list of marker genes for each cluster, a result of FindAllMarker function in the Seurat software.pdf files - depict spot assignment to clusters on a UMAP and corresponding to their spatial coordinates on the H&E sections imagesfiles_and_samples.csv - a table connecting mice IDs, sample IDs and slide IDs
DOI: 10.5281/zenodo.12176150
title: Data: Another Simple Test for the Presence of Multidomain Behaviour During Palaeointensity Experiments

description: SD_thresh_Out.csv - Data generated from simulations of IZZI protocol palaeointensity experiments.  The simulations were run with single domain type behaviour.  Naming conventions for parameters are similar to those found on the Standard Paleointensity Definitions website (https://earthref.org/PmagPy/SPD/home.html).

MD_thresh_Out.csv - Data generated from simulations of IZZI protocol palaeointensity experiments.  The simulations were run with multi-domain type behaviour.  Naming conventions for parameters are similar to those found on the Standard Palaeointensity Definitions website (https://earthref.org/PmagPy/SPD/home.html).

AraiPlot_XY_HighMD.txt - The X and Y co-ordinate points for a simulated Arai plot with a high degree of non-ideal behaviour.

parameter_noise_data.csv - Zig-Zag parameters calculated for a single Arai Plot with varying amounts of noise added.  The noise is sampled from a gaussian distribution with variances taken from https://doi.org/10.1029/2012GC004046.  The parameters broad_noise_TRM/NRM and narrow_noise_TRM/NRM give the noise applied to the x and y points,  broad and narrow denote the type of unblocking behaviour. The x and y points for the original Arai plot are given in x/y_noise_free.  The zig-zag statistics for the original Arai plot are given by parameters {statistic}_orig.  The suffix is then changed to denote whether the statistic was calculated with broad or narrow blocking noise applied.  The additional suffix _norm indicates that the value has been normalised by {statistic}_orig.
DOI: 10.5281/zenodo.12176149
title: Data: Another Simple Test for the Presence of Multidomain Behaviour During Palaeointensity Experiments

description: SD_thresh_Out.csv - Data generated from simulations of IZZI protocol palaeointensity experiments.  The simulations were run with single domain type behaviour.  Naming conventions for parameters are similar to those found on the Standard Paleointensity Definitions website (https://earthref.org/PmagPy/SPD/home.html).

MD_thresh_Out.csv - Data generated from simulations of IZZI protocol palaeointensity experiments.  The simulations were run with multi-domain type behaviour.  Naming conventions for parameters are similar to those found on the Standard Palaeointensity Definitions website (https://earthref.org/PmagPy/SPD/home.html).

AraiPlot_XY_HighMD.txt - The X and Y co-ordinate points for a simulated Arai plot with a high degree of non-ideal behaviour.

parameter_noise_data.csv - Zig-Zag parameters calculated for a single Arai Plot with varying amounts of noise added.  The noise is sampled from a gaussian distribution with variances taken from https://doi.org/10.1029/2012GC004046.  The parameters broad_noise_TRM/NRM and narrow_noise_TRM/NRM give the noise applied to the x and y points,  broad and narrow denote the type of unblocking behaviour. The x and y points for the original Arai plot are given in x/y_noise_free.  The zig-zag statistics for the original Arai plot are given by parameters {statistic}_orig.  The suffix is then changed to denote whether the statistic was calculated with broad or narrow blocking noise applied.  The additional suffix _norm indicates that the value has been normalised by {statistic}_orig. 

zigzag_delta.csv - Contains zig-zag statistics calculated for a straigth Arai plot, which is then incrementally given a zig-zag by displacing points perpendicularly to the oringal Arai plot.  X and Y points are given along with the amount of displacement (delta) and the zig-zag statistics.

CurvatureData.csv - Contains zig-zag statistics calculated for an increasingly curved Arai plot with no zig-zag present.  The Arai plot points, zig-zag statistics and the curvature are included.

ExperimentalData.csv - Selected statistics for experimental data where the expected field is known.  Includes the accuracy, natural log of the accuray (Acc), basic selection statistics and zig-zag selection statistics.
DOI: 10.5281/zenodo.13120514
title: Data: Another Simple Test for the Presence of Multidomain Behaviour During Palaeointensity Experiments

description: SD_thresh_Out.csv - Data generated from simulations of IZZI protocol palaeointensity experiments.  The simulations were run with single domain type behaviour.  Naming conventions for parameters are similar to those found on the Standard Paleointensity Definitions website (https://earthref.org/PmagPy/SPD/home.html).

MD_thresh_Out.csv - Data generated from simulations of IZZI protocol palaeointensity experiments.  The simulations were run with multi-domain type behaviour.  Naming conventions for parameters are similar to those found on the Standard Palaeointensity Definitions website (https://earthref.org/PmagPy/SPD/home.html).

AraiPlot_XY_HighMD.txt - The X and Y co-ordinate points for a simulated Arai plot with a high degree of non-ideal behaviour.

parameter_noise_data.csv - Zig-Zag parameters calculated for a single Arai Plot with varying amounts of noise added.  The noise is sampled from a gaussian distribution with variances taken from https://doi.org/10.1029/2012GC004046.  The parameters broad_noise_TRM/NRM and narrow_noise_TRM/NRM give the noise applied to the x and y points,  broad and narrow denote the type of unblocking behaviour. The x and y points for the original Arai plot are given in x/y_noise_free.  The zig-zag statistics for the original Arai plot are given by parameters {statistic}_orig.  The suffix is then changed to denote whether the statistic was calculated with broad or narrow blocking noise applied.  The additional suffix _norm indicates that the value has been normalised by {statistic}_orig. 

zigzag_delta.csv - Contains zig-zag statistics calculated for a straigth Arai plot, which is then incrementally given a zig-zag by displacing points perpendicularly to the oringal Arai plot.  X and Y points are given along with the amount of displacement (delta) and the zig-zag statistics.