cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc1zxm1k
title: CCDC 1844749: Experimental Crystal Structure Determination

description: Related Article: Fang Yin|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2brnqh
title: CCDC 2167697: Experimental Crystal Structure Determination

description: Related Article: Dmitry Kopchuk|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29zzdp
title: CCDC 2144933: Experimental Crystal Structure Determination

description: Related Article: Hitomi Ohmagari, Nicolas Marets, Jun Kamata, Mayo Yoneyama, Takumi Miyauchi, Yuta Takahashi, Yukina Yamamoto, Yuto Ogihara, Daisuke Saito, Kenta Goto, Ayumi Ishii, Masako Kato and Miki Hasegawa|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c5y2l
title: CCDC 2180449: Experimental Crystal Structure Determination

description: Related Article: Hitomi Ohmagari, Nicolas Marets, Jun Kamata, Mayo Yoneyama, Takumi Miyauchi, Yuta Takahashi, Yukina Yamamoto, Yuto Ogihara, Daisuke Saito, Kenta Goto, Ayumi Ishii, Masako Kato and Miki Hasegawa|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.4450435
title: An Empirical Study of Flaky Tests in Python

description: Paper Flapy (our test execution tool) TestsOverview.csv<br> - Project Columns: Project_Name, Project_URL, Project_Hash<br> - Test Columns: Test_filename, Test_classname, Test_funcname, Test_parametrization<br> - Flaky_sameOrder_withinIteration: the test is non-order-dependent flaky<br> - Order-dependent: the test is order-dependent flaky<br> - Flaky_Infrastructure: the test shows infrastructure flakiness
DOI: 10.5281/zenodo.4450434
title: An Empirical Study of Flaky Tests in Python

description: Paper Flapy (our test execution tool) TestsOverview.csv<br> - Project Columns: Project_Name, Project_URL, Project_Hash<br> - Test Columns: Test_filename, Test_classname, Test_funcname, Test_parametrization<br> - Flaky_sameOrder_withinIteration: the test is non-order-dependent flaky<br> - Order-dependent: the test is order-dependent flaky<br> - Flaky_Infrastructure: the test shows infrastructure flakiness
DOI: 10.21227/ck3w-fa95
title: For JLT_Modulator Bias Control Scheme  Based on PID Algorithm for Optical Time and Frequency Transmission

description: This dataset provides data support for manuscripts that will be submitted soon.
DOI: 10.6084/m9.figshare.21709946
title: 3-Nitro-2(1<i>H</i>)-quinolone derivatives as 2π components in 1,3-dipolar cycloadditions of azomethine ylides: A new synthesis of pyrrolo[3,4-<i>c</i>]quinolines

description: The 1,3-dipolar cycloaddition of 3-nitro-2(1<i>H</i>)-quinolones with ester-stabilized azomethine ylides derived from sarcosine ester and various aromatic aldehydes has been investigated. The structure and stereochemistry of cycloadducts were studied in detail by X-ray and NMR spectroscopy methods.
DOI: 10.6084/m9.figshare.21709946.v1
title: 3-Nitro-2(1<i>H</i>)-quinolone derivatives as 2π components in 1,3-dipolar cycloadditions of azomethine ylides: A new synthesis of pyrrolo[3,4-<i>c</i>]quinolines

description: The 1,3-dipolar cycloaddition of 3-nitro-2(1<i>H</i>)-quinolones with ester-stabilized azomethine ylides derived from sarcosine ester and various aromatic aldehydes has been investigated. The structure and stereochemistry of cycloadducts were studied in detail by X-ray and NMR spectroscopy methods.
DOI: 10.5281/zenodo.4652806
title: CCG Starter Data Kit: Tanzania

description: A starter data kit for Tanzania
DOI: 10.5281/zenodo.4652807
title: CCG Starter Data Kit: Tanzania

description: A starter data kit for Tanzania
DOI: 10.5281/zenodo.4756658
title: CCG Starter Data Kit: Tanzania

description: A starter data kit for Tanzania
DOI: 10.5281/zenodo.6542403
title: CCG Starter Data Kit: Tanzania

description: A starter data kit for Tanzania
DOI: 10.5281/zenodo.7540848
title: CCG Starter Data Kit: Tanzania

description: A starter data kit for Tanzania
DOI: 10.5281/zenodo.7541090
title: Solution, Crystal and in-Silico Structures of the Organometallic Vitamin B12-Derivative Acetylcobalamin and of its Novel Rhodium-Analogue Acetylrhodibalamin

description: Cartesian coordinates of all calculated structures discussed in the paper.
DOI: 10.5281/zenodo.7541089
title: Solution, Crystal and in-Silico Structures of the Organometallic Vitamin B12-Derivative Acetylcobalamin and of its Novel Rhodium-Analogue Acetylrhodibalamin

description: Cartesian coordinates of all calculated structures discussed in the paper.
DOI: 10.5281/zenodo.4725667
title: GlobBiomass dataset of forest biomass, Africa (25 m)

description: The dataset consists of a map of above ground forest biomass (AGB, unit: tons/ha i.e., Mg/ha) of the African continent for the year 2010 (raster dataset) with a pixel size of 25 m x 25 m. AGB is defined as the mass, expressed as oven-dry weight of the woody parts (stem, bark, branches and twigs) of all living trees excluding stump and roots. Per-pixel estimates of above-ground biomass uncertainty expressed as standard error in Mg/ha (raster dataset) are also provided. The AGB estimates were obtained from spaceborne SAR (ALOS PALSAR, Envisat ASAR), optical (Landsat-7), LiDAR (ICESAT), auxiliary datasets with multiple estimation procedures (Santoro et al., ESSD, 2021). In this repository, the AGB data are available in form of tiles of 2° x 2° for the African continent (bounding box: longitude -26°E/+56°E latitude: -36°N/+38°N). This dataset is the basis for the official GlobBiomass dataset consisting of global estimates of forest biomass with 1 ha pixels (https://doi.pangaea.de/10.1594/PANGAEA.894711). The dataset in this repository represents the original GlobBiomass dataset of AGB for Africa from which the official dataset was obtained after averaging from 25 m to 100 m. Given the lower accuracy of the 25 m pixel-based estimates, it is recommended to use the official GlobBiomass dataset unless detailed spatial resolution is a fundamental asset. Technical specifications are provided in the file README_GLOBBIOMASS_Africa_20210428.pdf
description: {"references": ["Santoro, M., Cartus, O., Carvalhais, N., Rozendaal, D., Avitabilie, V., Araza, A., de Bruin, S., Herold, M., Quegan, S., Rodr\u00edguez Veiga, P., Balzter, H., Carreiras, J., Schepaschenko, D., Korets, M., Shimada, M., Itoh, T., Moreno Mart\u00ednez, \u00c1., Cavlovic, J., Cazzolla Gatti, R., da Concei\u00e7\u00e3o Bispo, P., Dewnath, N., Labri\u00e8re, N., Liang, J., Lindsell, J., Mitchard, E.T.A., Morel, A., Pacheco Pascagaza, A.M., Ryan, C.M., Slik, F., Vaglio Laurin, G., Verbeeck, H., Wijaya, A., Willcock, S., 2020. The global forest above-ground biomass pool for 2010 estimated from high-resolution satellite observations (preprint). Earth System Science Data Discussions, https://doi.org/10.5194/essd-2020-148"]}
DOI: 10.5281/zenodo.4725666
title: GlobBiomass dataset of forest biomass, Africa (25 m)

description: The dataset consists of a map of above ground forest biomass (AGB, unit: tons/ha i.e., Mg/ha) of the African continent for the year 2010 (raster dataset) with a pixel size of 25 m x 25 m. AGB is defined as the mass, expressed as oven-dry weight of the woody parts (stem, bark, branches and twigs) of all living trees excluding stump and roots. Per-pixel estimates of above-ground biomass uncertainty expressed as standard error in Mg/ha (raster dataset) are also provided. The AGB estimates were obtained from spaceborne SAR (ALOS PALSAR, Envisat ASAR), optical (Landsat-7), LiDAR (ICESAT), auxiliary datasets with multiple estimation procedures (Santoro et al., ESSD, 2021). In this repository, the AGB data are available in form of tiles of 2° x 2° for the African continent (bounding box: longitude -26°E/+56°E latitude: -36°N/+38°N). This dataset is the basis for the official GlobBiomass dataset consisting of global estimates of forest biomass with 1 ha pixels (https://doi.pangaea.de/10.1594/PANGAEA.894711). The dataset in this repository represents the original GlobBiomass dataset of AGB for Africa from which the official dataset was obtained after averaging from 25 m to 100 m. Given the lower accuracy of the 25 m pixel-based estimates, it is recommended to use the official GlobBiomass dataset unless detailed spatial resolution is a fundamental asset. Technical specifications are provided in the file README_GLOBBIOMASS_Africa_20210428.pdf
description: {"references": ["Santoro, M., Cartus, O., Carvalhais, N., Rozendaal, D., Avitabilie, V., Araza, A., de Bruin, S., Herold, M., Quegan, S., Rodr\u00edguez Veiga, P., Balzter, H., Carreiras, J., Schepaschenko, D., Korets, M., Shimada, M., Itoh, T., Moreno Mart\u00ednez, \u00c1., Cavlovic, J., Cazzolla Gatti, R., da Concei\u00e7\u00e3o Bispo, P., Dewnath, N., Labri\u00e8re, N., Liang, J., Lindsell, J., Mitchard, E.T.A., Morel, A., Pacheco Pascagaza, A.M., Ryan, C.M., Slik, F., Vaglio Laurin, G., Verbeeck, H., Wijaya, A., Willcock, S., 2020. The global forest above-ground biomass pool for 2010 estimated from high-resolution satellite observations (preprint). Earth System Science Data Discussions, https://doi.org/10.5194/essd-2020-148"]}
DOI: 10.5281/zenodo.5139499
title: CCG Starter Data Kit: Thailand

description: A starter data kit for Thailand
DOI: 10.5281/zenodo.6542404
title: CCG Starter Data Kit: Thailand

description: A starter data kit for Thailand
DOI: 10.5281/zenodo.7541032
title: CCG Starter Data Kit: Thailand

description: A starter data kit for Thailand
DOI: 10.5281/zenodo.5139498
title: CCG Starter Data Kit: Thailand

description: A starter data kit for Thailand
DOI: 10.5281/zenodo.7541147
title: Sergi Guerri Almiñana

description: Sergi Guerri Almiñana
DOI: 10.5281/zenodo.7541146
title: Sergi Guerri Almiñana

description: Sergi Guerri Almiñana
DOI: 10.5281/zenodo.7534377
title: Phenotypic diversity of root architecture and genotypic variation in durum wheat under salt stress

description: Supplementary data consists of Principal Components values for traits detected under salt and control conditions (S1); Markers' locations onto the durum wheat reference genome associated with QTL (S2); Markers associated with genes from NCBI database (S4); PCR results and alleles distribrution
DOI: 10.5281/zenodo.7541187
title: Phenotypic diversity of root architecture and genotypic variation in durum wheat under salt stress

description: Supplementary data consists of Principal Components values for traits detected under salt and control conditions (S1); Markers' locations onto the durum wheat reference genome associated with QTL (S2); Markers associated with genes from NCBI database (S4); PCR results and alleles distribrution
DOI: 10.5281/zenodo.7534376
title: Phenotypic diversity of root architecture and genotypic variation in durum wheat under salt stress

description: Supplementary data consists of Principal Components values for traits detected under salt and control conditions (S1); Markers' locations onto the durum wheat reference genome associated with QTL (S2); Markers associated with genes from NCBI database (S4); PCR results and alleles distribrution
DOI: 10.5281/zenodo.4725459
title: CCG Starter Data Kit: Tunisia

description: A starter data kit for Tunisia
DOI: 10.5281/zenodo.4728637
title: CCG Starter Data Kit: Tunisia

description: A starter data kit for Tunisia
DOI: 10.5281/zenodo.4756797
title: CCG Starter Data Kit: Tunisia

description: A starter data kit for Tunisia
DOI: 10.5281/zenodo.4993839
title: CCG Starter Data Kit: Tunisia

description: A starter data kit for Tunisia
DOI: 10.5281/zenodo.4725458
title: CCG Starter Data Kit: Tunisia

description: A starter data kit for Tunisia
DOI: 10.5281/zenodo.6631830
title: CCG Starter Data Kit: Tunisia

description: A starter data kit for Tunisia
DOI: 10.5281/zenodo.7541154
title: CCG Starter Data Kit: Tunisia

description: A starter data kit for Tunisia
DOI: 10.5281/zenodo.5139527
title: CCG Starter Data Kit: Viet Nam

description: A starter data kit for Viet Nam
DOI: 10.5281/zenodo.6478252
title: CCG Starter Data Kit: Viet Nam

description: A starter data kit for Viet Nam
DOI: 10.5281/zenodo.6542407
title: CCG Starter Data Kit: Viet Nam

description: A starter data kit for Viet Nam
DOI: 10.5281/zenodo.7541226
title: CCG Starter Data Kit: Viet Nam

description: A starter data kit for Viet Nam
DOI: 10.6084/m9.figshare.21904860.v1
title: Supplementary Material for: A Genetics Study in the Foreskin of Boys with Hypospadias

description: <b><i>Introduction:</i></b> Hypospadias is a malformation of the genitourinary system in males, characterized by the placement of the urethral opening in the ventral surface of the penis. Although controversies continue about etiology, endocrine disrupting chemicals that disrupt normal endocrine signaling at the receptor or signal transduction level are thought to play an essential role in etiology. This study aimed to investigate the receptor gene expressions of the sex hormones and <i>FGFR2</i>, <i>HOXA13</i>, and <i>TGFB1</i>, which are considered to play an essential role in developing hypospadias. <b><i>Methods:</i></b> The samples from the foreskin of 26 patients with hypospadias and 26 healthy children who underwent circumcision operations were collected. <i>ESR1</i>, <i>AR</i>, <i>FGFR2</i>, <i>HOXA13</i>, and <i>TGFB</i> gene expressions were investigated by real-time PCR in samples obtained during surgery. <b><i>Results:</i></b> In the hypospadias group, <i>ESR1</i> expression was increased (<i>p</i> = 0.013), and <i>AR</i> and <i>FGFR2</i> expressions were decreased, which were found to be statistically significant (<i>p</i> = 0.027 and <i>p</i> = 0.003, respectively). There was no statistically significant difference between hypospadias and control groups in <i>TGFB</i>and <i>HOXA13</i>expression levels (<i>p</i> &gt; 0.05). <b><i>Discussion:</i></b> The results suggest that sex hormone receptors and FGFR2 may play an essential role in developing male external genital structures at the gene level. The defects in the expression of these genes can contribute to understanding the development of hypospadias.
DOI: 10.6084/m9.figshare.21353601
title: Supplementary Material for: Predictive Value of the Hepatic Immune Predictive Index for Patients with Primary Liver Cancer Treated with Immune Checkpoint Inhibitors

description: Background: Immune checkpoint inhibitors (ICIs) have improved survival outcomes and resulted in long-term responses in primary liver cancer in some patients. However, its efficacy is limited by the risk of tumor recurrence, resulting in rapid death and graft loss if patients are not selected appropriately. Therefore, it is necessary to identify patients suitable for such therapy. Methods: 215 patients with primary liver cancer with immunotherapy were screened between August 2018 and October 2020 as a training set and our validation set were included 71 patients of hepatocellular carcinoma from Jiangxi Cancer Hospital, The Second Affiliated Hospital of Nanchang Medical College from May 2019 to July 2021. The primary endpoint was the disease control rate (DCR), and the secondary endpoints were overall survival (OS) and progression-free survival (PFS). Results: In the traing set, Neutrophil-leukocyte ratio (NLR) &gt;3, Alpha-fetoprotein (AFP) level &gt;20 ng/ml, distant metastasis at baseline, and absence of combination with targeted therapy were associated with non-DCR in the training set. Moreover, NLR &gt;3 and AFP level &gt;20 ng/ml were also independently associated with OS. Furthermore, a hepatic immune predictive index (HIPI) based on NLR &gt;3 and AFP level &gt;20 ng/mL was developed and associated with worse clinical outcomes. In validation set, HIPI was associated with overall survival. Conclusion: Baseline hepatic immune predictive index based on NLR and AFP level is an effective indicator in ICI-treated patients with primary liver cancer. Our findings may help guide the selection and on-treatment strategies for immunotherapies for primary liver cancer patients.
DOI: 10.25376/hra.21904863
title: Billiar AHA data sharing images for Acta Biomatl 2022.zip

description: Microscope images of aggregates of porcine valvular intersititial cells grown on micropatterned islands of collagen to examine the cell collective behavior. Computer code for objective image analysis.
DOI: 10.25376/hra.21904863.v1
title: Billiar AHA data sharing images for Acta Biomatl 2022.zip

description: Microscope images of aggregates of porcine valvular intersititial cells grown on micropatterned islands of collagen to examine the cell collective behavior. Computer code for objective image analysis.
DOI: 10.6084/m9.figshare.21896475
title: Antibiotics under our feet: investigating the presence of ESKAPE bacteria and other human pathogens in our urban soil samples

description: This dataset consists of a Krona chart visualisation of our bioinformatics results for our first six soil samples sent for DNA sequencing. The Krona chart was used to determine if ESKAPE pathogens or other human pathogens were present in our soil samples. A spreadsheet of the results together is included. Two tables to display the results (ESKAPE pathogens, other human pathogent) were produced and are presented here in .mp4 video format that can be paused to view results for each soil sample. The data analysis for this part of the "Antibiotics under our feet" was carried out in collaboration with a Nuffield Research Placement student at the University of St Andrews during the summer of 2022. The Nuffield project protocol with instructions for analysing the Krona chart to gather data is included.
DOI: 10.6073/pasta/1b5b947999aa2f9e0e95c91782b36ee9
title: Modeled Organic Carbon, Dissolved Oxygen, and Secchi for six Wisconsin Lakes, 1995-2014

description: This data package contains model output data, driving data, and supplemental information for a two-layer modeling study that investigated organic carbon and oxygen dynamics within six Wisconsin lakes over a twenty-year period (1995-2014). The six lakes are Lake Mendota, Lake Monona, Trout Lake, Allequash Lake, Big Muskellunge Lake, and Sparkling Lake. The model output includes daily predictions of six state variables: labile particulate organic carbon, recalcitrant particulate organic carbon, labile dissolved organic carbon, recalcitrant dissolved organic carbon, dissolved oxygen, and Secchi depth. The output also includes daily predictions of physical and metabolism fluxes that were used in the prediction of the state variables. This data package also contains model driving data for each lake and other supplemental information that was calculated during the modeling runs.
DOI: 10.6073/pasta/170e5ba0ed09fe3d5837ef04c47e432e
title: Lake Mendota Carbon and Greenhouse Gas Measurements at North Temperate Lakes LTER 2016

description: This original dataset contains carbon and greenhouse gas (GHG) data collected in Lake Mendota during the summer of 2016. Data were collected between 15 April 2016 and 14 November 2016 on both Lake Mendota and its surrounding streams—four major inflows and the primary outflow of Lake Mendota. The dataset is comprised of four linked tables, corresponding to carbon and GHG measurements on Lake Mendota (lake_weekly_carbon_ghg), weekly physico-chemical sonde casts on Lake Mendota (lake_weekly_ysi), ebullition rate estimates on Lake Mendota (lake_weekly_ebullition), and carbon and physico-chemical data from the four major inflows and primary outflow of Lake Mendota (stream_weekly_carbon_ysi). These data were used to explore the relationship between organic carbon dynamics and greenhouse gas production on a eutrophic lake. From these data, it is possible to estimate daily oxygen, methane, and carbon dioxide flux on Lake Mendota during the study time period. Additional methods and applications of this data can be found in J.A. Harts Masters Thesis, University of Wisconsin-Madison Center for Limnology, May 2017.
DOI: 10.5281/zenodo.4725471
title: CCG Starter Data Kit: Zambia

description: A starter data kit for Zambia
DOI: 10.5281/zenodo.4729551
title: CCG Starter Data Kit: Zambia

description: A starter data kit for Zambia
DOI: 10.5281/zenodo.4756769
title: CCG Starter Data Kit: Zambia

description: A starter data kit for Zambia
DOI: 10.5281/zenodo.4725470
title: CCG Starter Data Kit: Zambia

description: A starter data kit for Zambia
DOI: 10.5281/zenodo.4993886
title: CCG Starter Data Kit: Zambia

description: A starter data kit for Zambia
DOI: 10.5281/zenodo.5733335
title: CCG Starter Data Kit: Zambia

description: A starter data kit for Zambia
DOI: 10.5281/zenodo.5751722
title: CCG Starter Data Kit: Zambia

description: A starter data kit for Zambia
DOI: 10.5281/zenodo.6542410
title: CCG Starter Data Kit: Zambia

description: A starter data kit for Zambia
DOI: 10.5281/zenodo.7541227
title: CCG Starter Data Kit: Zambia

description: A starter data kit for Zambia
DOI: 10.5281/zenodo.3600553
title: Major and trace bulk sample and micro-XRF geochemistry, carbon and oxygen stable isotope compositions of magmatic and sedimentary rocks from Hovedøya Island, Oslo fjord, Norway.

description: This data set reports on the methodologies and results of geochemical analysis carried out on samples of magmatic rock, calcite and sedimentary rocks of Hovedoya Island, Oslo fjord, Norway, in the framework of the publication by Poppe et al. (2020; <em>Geochemistry, Geophysics, Geosystems</em>; https://doi.org/10.1029/2019GC008685). The major and trace element bulk sample geochemical analysis was carried at the Laboratoire G-Time, Université Libre de Bruxelles, Brussels (V. Debaille), the micro-XRF mapping and line scanning, was carried out at the laboratory of the Analytical and Environmental Geo-Chemistry (AMGC) group at the Vrije Universiteit Brussel (VUB), Brussels (N.J. de Winter, S. Poppe) and the stable isotope composition analysis was carried out as well at the AMGC laboratory (S. Poppe, S. Goderis), supervised by P. Claeys and M. Kervyn, in collaboration with P. Boulvias. Data sheets are provided in .csv or .xlsx format and compressed folders containing .TIF images of µXRF elemental maps are attached. This data set also contains the complete data sets obtained for the construction of calibration curves for µXRF line scan analysis of rock samples of magmatic composition at the AMGC laboratory at VUB.
description: Data Set supplementary to Poppe, S., Galland, O., de Winter, N. J., Goderis, S., Claeys, P., Debaille, V., Boulvais, P., Kervyn, M., 2020. Structural and geochemical interactions between magma and sedimentary host rock: the Hovedøya case, Oslo Rift, Norway. Geochemistry, Geophysics, Geosystems, https://doi.org/10.1029/2019GC008685