cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28210712.v1
title: Performance Survey

description: The survey utilized to get responses from participant after every sprint in capstone project course
DOI: 10.17632/r3hpnn79td
title: Gas Invasion Behaviors into Layered Porous Systems and Deformation Patterns

description: This is the data set for the paper 'Gas Invasion Behaviors into Layered Porous Systems and Deformation Patterns'
DOI: 10.6084/m9.figshare.22774292.v1
title: environmental data and model code

description: ① environmental data measured by 197 meteorological stations in the Yangtze River Economic Belt; ② Collected samples of the existence of Erigeron Annuus from the Botanical Museum; ③ Model prediction code used.
DOI: 10.6084/m9.figshare.27022471.v1
title: Plant Connectome

description: Knowledge graph for Arabidopsis thaliana
DOI: 10.6084/m9.figshare.7937870.v1
title: gVCF_HG02731

description: 1000 Genomes gVCF mapped to hs37d5 for HG02731. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17605/osf.io/wbvqu
title: Patient-reported Outcomes and Acupuncture-related Adverse Events are overlooked in Acupuncture Randomized Controlled Trials: a cross-sectional meta-epidemiological study

description: Complete and standardized reporting can facilitate study transparency, openness, and reproducibility. Therefore, we assessed the reporting of Patient-Reported Outcomes (PROs) and acupuncture-realted Adverse Events (A-AEs) of acupuncture Randomized Controlled Trials (RCTs) and presented them in this dataset. The dataset contains raw data on general characteristics, report scores, data sharing details, and spin assessments from 423 acupuncture RCTs. All data were double-checked to ensure the consistency and accuracy of data extraction.
DOI: 10.6084/m9.figshare.28779662.v1
title: SYNCode (Case Study Datasets)

description: SYNCode is a collaborative annotation framework that combines human expertise with large language models (LLMs) to improve the quality of annotations for complex, code-centric datasets like Stack Overflow. The system integrates TF-IDF filtering, advanced transformer models (NLP Transformer and UniXcoder), and iterative human refinement to enhance annotation accuracy and reduce bias. A prototype interface enables real-time human-LLM collaboration, demonstrating strong potential for improving annotation reliability in software engineering and NLP applications.
DOI: 10.6084/m9.figshare.6992102.v1
title: Influence of rainfall intensity on the production of runoff on ceramic tile roofs: laboratory experiments under simulated rainfall

description: ABSTRACT Rainwater harvesting consists on the collection of runoff from low permeable surfaces, as roofs and streets. Designing these systems is often based on pluviometer data and not on pluviograph data, therefore they do not consider crucial data on the amount of rainwater available to harvesting. Laboratory experiments were conducted by simulating low, moderate and high intensity rainfall on a ceramic tile roof. Results shown that rainfall intensities between 12.8 and 61.6 mm h-1 (moderate to high intensity) lead to runoff coefficients greater than 0.9, while for rainfall low intensities (lower than 1.2 mm h-1), the runoff coefficient drastically decreased, reaching values of zero for rainfall intensities lower than 0.25 mm h-1. In conclusion, for the simulated experimental conditions, water absorption of the ceramic tiles is more significant on the runoff for very low rainfall intensities than the strong or moderate rainfall intensities.
DOI: 10.17632/3f7z3jvm8r
title: Cleaner synthesis of preclinically validated vaccine adjuvants

description: NMR File of the paper "Cleaner synthesis of preclinically validated vaccine adjuvants" in publication on Frontiers in Chemistry
DOI: 10.17608/k6.auckland.21601620.v5
title: Community of Inquiry Manuscript data.sav

description: Teachers’ online professional development (PD) has been valued as a crucial and effective way to promote teaching competencies. Forming a professional learning community that allows teachers to learn collectively has been recognized as a means to promote effective PD. Within this realm of research, the Community of Inquiry (CoI) framework was deemed a collaborative-constructivist process model that describes successful online learning experiences. The CoI has been associated with many other psychological and educational variables, such as learning achievement and sense of efficacy. This study exploits the CoI framework to assess teachers' online professional learning quality and explores its relationship with teachers’ self-efficacy and online professional learning achievement. 456 teacher participants from Chinese middle schools (439 valid cases with 139 males and 300 females) participated in our study. They responded to a questionnaire containing three separate instruments measuring their assessments of online learning quality (reflected by the CoI instrument score), sense of self-efficacy, and perceived learning achievement. Linear regression, PROCESS Macro mediation, and moderation analyses were run to answer the research questions. The findings of the study revealed a significant relationship between teachers’ online learning quality and their self-efficacy and learning achievement. The mediating roles of self-efficacy and learning achievement were also confirmed. The moderating role of time spent on receiving online professional learning was also recognized. Implications and future directions were discussed. Informed consent to participate was obtained from all individual participants included in the study. Informed consent for publication was obtained from all individual participants included in the study.
DOI: 10.6084/m9.figshare.19092791.v1
title: Data and code for Fig4d&e

description: Data and code of Fig4d&e for Data and codes for Figure 5 inner plot for "Dynamic-quenching of a single-photon avalanche photodetector using an adaptive resistive switch"
DOI: 10.6084/m9.figshare.24623946.v1
title: Supplementary Material for: The Effects of Mindfulness for Youth (MYmind) versus Group Cognitive Behavioral Therapy (CBT) in Improving Attention and Reducing Behavioral Problems among Children with Attention Deficit Hyperactivity Disorder (ADHD) and Their Parents: A Randomized Controlled Trial

description: Introduction There is a lack of studies evaluating mindfulness-based interventions for children with ADHD compared with an evidence-based control. This randomized controlled trial (RCT) evaluated the effects of Mindfulness for Youth (MYmind) in improving children’s attention, behavior and parent related outcomes versus cognitive behavioral therapy (CBT). Method A total of 138 families of children with ADHD aged 8-12 years were recruited from the community with 69 randomized to MYmind and 69 to CBT. Participants were assessed at baseline, immediately after intervention, at 3 months and 6 months. The primary outcome was the attention score of the Sky Search subtest of the Test of Everyday Attention for Children (TEA-Ch). Secondary outcomes were child behavior and parent-related assessments. Linear mixed models (LMMs) were used to assess the efficacy of MYmind compared with CBT. Results Both MYmind and CBT significantly improved children’s attention score at 6 months (MYmind: β = 1.48, p = 0.013, Cohen’s d = 0.32; CBT: β = 1.46, p = 0.008, d = 0.27). There were significant within-group improvements in most secondary outcomes. No significant difference was shown for both primary or secondary outcomes between the two arms at any time point. Conclusions Both MYmind and CBT appeared to improve children’s attention and behavior outcomes, although no difference was found between these two interventions. This is the largest RCT so far comparing MYmind and CBT although there was loss of follow-up assessments during the pandemic. Further RCTs adopting a non-inferiority design are needed to validate the results.
DOI: 10.6084/m9.figshare.899752.v1
title: IDL routine to fit 3D ellipsoids that are free to rotate

description: Takes a set of cartesian data points as input, fits an free to rotate 3D ellipsoid, and returns the associated parameters (see fit_3d_ellipsoid.pro for more details). Please refer to Gagné et al. 2014 (see link) when using these routines. Since this routine uses krEllipsoidFit written by Ronn Kling and Jerry Lefever, please also give them credit and refer to the website www.rlkling.com
DOI: 10.6084/m9.figshare.14346500.v1
title: Dataset1_anglesPSG.txt

description: List of discrete Angles for PSG. Each column corresponds to a different number of angles, N (N=16 in the first column and N=100 in the last column). Unused rows (when the row number exceeds N) are filled with "0".
DOI: 10.6084/m9.figshare.915440.v3
title: Formalised quality indicator and fake patient data

description: Indicator formalised by 8 students and fake patient data (schema might have changed a little) accompanying our paper "The Reproducibility of CLIF, a Method for Clinical Quality Indicator Formalisation". The application to formalise indicators is on github.
DOI: 10.6084/m9.figshare.1463318.v1
title: Multilocus sequence analysis of Streptococcus anginosus group

description: This fileset contains individual FASTA files for the unique alleles at each of the loci considered in the Multilocus Sequence Analysis method used and two supplementary tables with the information of individual strains.
DOI: 10.17632/59mg363ggt
title: Macroprudential Policy with Leakages

description: Replication package for JIE article "Macroprudential Policy with Leakages" by Julien Bengui and Javier Bianchi
DOI: 10.6084/m9.figshare.25239733.v1
title: Congenital malformations and risk factors.sav

description: <b>Are Congenital Malformations associated with Maternal Sociodemographic and Risk Factors? A Multicenter Ultrasound-Based Study</b><b>Objective:</b> To determine the association of congenital malformations with sociodemographic and maternal risk factors in different ethnicities.<b>Methodology:</b> Sample of 120 participants fulfilling the inclusion criteria were included in this case-control study after purposive sampling. It was conducted over a period of 6 months. Sonoscape S22 ultrasound system and Toshiba Aplio 500 ultrasound system were used to detect congenital anomalies. Participants were divided into 5 groups based on ethnicity. An association between maternal age, education level, family income and medications with congenital malformations in fetuses was observed.
DOI: 10.17632/4xknjgbmhy
title: Spherical Bessel functions jn and yn of integer order and real argument

description: Title of program: SPHBES Catalogue Id: ACXM_v1_0 Nature of problem The spherical Bessel function appears in a variety of physical applications, and especially in phase shift analysis. The package SPHBES contains a subroutine to calculate jn(x) and yn(x) for any integer order n and real argument x. The functions jn(x) and yn(x) are produced simultaneously and efficiently. Versions of this program held in the CPC repository in Mendeley Data ACXM_v1_0; SPHBES; 10.1016/0010-4655(78)90019-X This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/7x27pg63hd
title: Dataset for “An Industrial Demonstration Study on CO2 Mineralization Curing for Concrete”

description: Dataset for “An Industrial Demonstration Study on CO2 Mineralization Curing for Concrete”
DOI: 10.17632/dbvrdsdvpy
title: Impact of Hydroxychloroquine on QTc Prolongation Among Patients with Cutaneous Sarcoidosis: A Multi-Center, Retrospective Cohort Study

description: Supplemental Data for Impact of Hydroxychloroquine on QTc Prolongation Among Patients with Cutaneous Sarcoidosis: A Multi-Center, Retrospective Cohort Study
DOI: 10.17632/wt2msd3965
title: 2022 Study of sonication parameters on PLA nanoparticles preparation by simple emulsion-evaporation solvent technique

description: In this work, we use a Box-Behnken design to evaluate the effect of external ultrasound parameters (power, time, and sonication cycles) to prepare PLA nanoparticles by the simple emulsion solvent evaporation methodology to predict and modulate nanoparticulate systems with desired size and narrow distributions depending on the final application. The results of this research can be used to support future preparations of PLA-based PNPs with narrow particle size distributions, reducing production time and costs and ensuring adequate reproducibility.
DOI: 10.6084/m9.figshare.12397757.v1
title: A global analysis of the evolutionary drivers of wild mammals use in traditional medicine

description: Ingredients derived from wild mammals are widely used in traditional remedies. Large datasets of trait, range, and phylogeny are also available for mammals. Therefore, this is an ideal group to explore the ecological (e.g., range size, body mass) and evolutionary (i.e., shared ancestry) drivers of the use of animal-derived products in traditional medicine. Here, we provide a global analysis of the drivers of the use of wild mammals in traditional medicine<b>, </b>testing how life-history traits explain pattern in present-day use of these animals. We compiled data from the primary literature about folk remedies based on mammals by a literature search using ISI Web of Knowledge, Scopus, and Google Scholar. Then, we used modern phylogenetic comparative methods to estimate phylogenetic signal in the diseases in which animal parts are used for, and also test if geographic range and body size affected the use. Also, we tested if species more used are also those more threatened by extinction. Our results show that 521 mammal species are used as source for products to treat 371 diseases. We found support for the hypothesis that phylogenetic relatedness determines the use of mammal-derived remedies in traditional medicines. Specifically, we confirm our hypotheses that closely-related species are more versatile and are used to treat similar diseases. Furthermore, we demonstrated that mammals with larger body size are more versatile and are used to treat more diseases. As many as 209 species in our database are listed in some threat category, suggesting that overexploitation for medicinal uses can be an overlooked source of threat and should ideally be considered in mammal species conservation assessments. By showing that phylogenetic relatedness affects species use as remedy in traditional medicine, we urge future studies to evaluate the negative effects of overexploitation of animals for medical purposes, because it can cause nonrandom extinction patterns in the mammalian tree of life.<b></b>
DOI: 10.6084/m9.figshare.9735299.v1
title: Supplementary Material for: Identification of Genes and Pathways Associated with Acne Using Integrated Bioinformatics Methods

description: <b><i>Background:</i></b> Acne is the most common skin inflammatory condition. The pathogenesis of acne is not fully understood. <b><i>Aims:</i></b> We performed weighted gene co-expression network analysis (WGCNA) to select acne-associated genes and pathways. <b><i>Methods:</i></b> GSE53795 and GSE6475 datasets including data from lesional and nonlesional skin of acne patients were downloaded from the NCBI Gene Expression Omnibus. Differentially expressed genes (DEGs) in lesions were identified following a false discovery rate &lt;0.05 and | log2 fold change | ≥0.5. DEG-associated biological processes and pathways were identified. WGCNA analysis was performed to identify acne-associated modules. DEGs in the acne-associated modules were used for protein-protein interaction (PPI) network construction and Gene Set Enrichment Analysis (GSEA). Acne-associated candidate DEGs and pathways were identified together with items in the Comparative Toxicogenomics Database (CTD). <b><i>Results:</i></b> A total of 2,140 and 1,190 DEGs were identified in GSE53795 and GSE6475 datasets, respectively, including 716 overlapping DEGs with similar expression profiles in the two datasets, which were clustered into 10 consensus modules. Two modules (brown and turquoise, 359 genes) were associated with acne phenotype. Of these 359 DEGs, 254 were enrolled in the PPI network. GSEA showed that these DEGs were associated with chemokine signaling pathway, cytokine-cytokine receptor interaction, and natural killer cell-mediated cytotoxicity. After identification in CTD, one pathway Cytokine-cytokine receptor interaction and 24 acne-associated DEGs, including IL1R1, CXCL1, CXCR4, CCR1, CXCL2 and IL1β, were identified as candidates associated with acne. <b><i>Conclusion:</i></b> Our results highlight the important roles of the proinflammatory cytokines including IL1β, CXCL1, CXCL2, CXCR4, and CCR1 in acne pathogenesis or therapeutic management.
DOI: 10.6084/m9.figshare.974604.v4
title: Supplementary data for the paper: "Recombination analysis of Maize dwarf mosaic virus in the SCMV subgroup of Potyviruses"

description: Supplementary data for the paper: "Recombination analysis of Maize dwarf mosaic virus in the SCMV subgroup of Potyviruses.", including the FASTA sequences, CLUSTAL W and MUSCLE sequence alignments, TOPALi and RDP3 recombination analysis results.
DOI: 10.6084/m9.figshare.14645316
title: Long-term experience with rituximab therapy for treatment-resistant moderate-to-severe pemphigus

description: Rituximab appears to be effective for treating pemphigus, although there are limited long-term data. This retrospective single-center study evaluated patients with conventional treatment-resistant pemphigus who received rituximab during September 2010–December 2019. The first rituximab cycle was based on the rheumatoid arthritis protocol in all patients except one patient, and additional single doses (500 mg or 1000 mg) were administered after clinical and/or serological relapse. The consensus definitions were used for complete remission off therapy, complete remission on minimal therapy, and clinical relapse. Serological relapse was defined as a progressive ≥2-fold increase in anti-desmoglein titers (vs. previous the measurement). The study included 52 patients with pemphigus vulgaris and 1 patient with pemphigus foliaceus. The mean number of infusions was 5 and the average follow-up after the first infusion was 56 months. The average time to clinical and/or serological relapse was 12 months. Complete remission was achieved in 84.9% of patients, including after the first rituximab cycle in 25 patients (47.1%). Two patients died during the follow-up period. Additional rituximab cycles may help achieve and prolong remission in patients with moderate-to-severe pemphigus resistant to conventional therapies. However, prospective trials are needed to identify the optimal dosing protocol.
DOI: 10.6084/m9.figshare.16918075.v1
title: Robosoccer-5

description: dataset
DOI: 10.17632/n766nhfsmf
title: Data for: Guidelines for the Search Strategy to Update Systematic Literature Reviews in Software Engineering

description: The file lists papers found in the two updated SLRs analysed in the paper.
DOI: 10.23645/epacomptox.16701988.v1
title: Extract physicochemical property, environmental fate, and bioaccumulation data from public sources

description: This product will deliver physiochemical data needed to assess the potential impact of PFAS chemicals on the environment. While there is a broad range ofproperties to support regulatory activities, the octanol-water partition coefficient (logKow/logP), aqueous solubility, vapor pressure, BAF and BCF(bioaccumulation and bioconcentration factors) are some of the more important. Additional physicochemical properties will be added based on discussionwith the program offices (e.g. OLEM). Clear selection criteria will be established for the inclusion/exclusion of physicochemical property values. Due to therecent focus on PFAS chemicals, new data is being generated and made available via public domain databases and peer-reviewed literature. Datacollection will enable users to access this data via our chemical properties database and the CompTox Chemicals Dashboard. The data search will focuson chemicals in our PFAS inventory (https://comptox.epa.gov/dashboard/chemical_lists/EPAPFASINV). Additional chemicals for the search will be addedbased on discussions with the program offices. Efforts will be coordinated with the other labs (e.g. CPHEA) to avoid duplication of effort. These data willalso be utilized for the development of predictive QSPR models (e.g. OPERA and TEST predictions) under Product CSS.8.4.11. The data can also bemade available for the training of other models within the agency. Previous research illustrated that the inclusion of new data significantly improved theperformance of QSPR models. However, new classes continue to emerge and sustained efforts are required to fill data gaps and provide reliable andcitable experimental data within the agency. The research needed to help support designation of PFAS as hazardous includes generation of chemical andphysical characteristics. This work can directly support this effort as well as other programmatic and statutory efforts of program partners.<br>Science Inventory, CCTE products: https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25<br>
DOI: 10.6084/m9.figshare.27281112.v1
title: Malaria NYS 2016-2022

description: Malaria case numbers in New York State 2016-2022, derived from the New York State Department of Health Communicable Diseases Annual Reports, https://www.health.ny.gov/statistics/diseases/communicable/
DOI: 10.17632/f8bxz5kdsh
title: Investigation on Dynamic Interaction Characteristics of Pantograph-Catenary System in High-Speed Railway near the Critical Speed

description: A portion of the output results from Fig.6 to 14.
DOI: 10.6084/m9.figshare.23535945.v2
title: Effects of sediment and algal growth on water quality of water samples from water conveyance channel（Shared Data）

description: Permanganate index is used to evaluate water quality, as it indicates the pollution level of organic and inorganic oxidizable substances in water. Sediment and algae are potential causes for the increase in I<sub>mn</sub>, so it is imperative to explore the effects of these two factors on I<sub>mn</sub>. In this study, we artificially added sediment to water to simulate eutrophic water for algae growth. We cultured algae for 41 days and observed the changes in I<sub>mn</sub>, algal density, nitrogen, and phosphorus. The results showed that organic matter in sediment and algal growth promoted increase in I<sub>mn</sub> in the water. The sediment resuspension released organic matter into the water, resulting in significant increase in I<sub>mn</sub>. The addition of 1.6% sediment in the water sample lead to an increase in I<sub>mn</sub> of 14.7 mg/L. The phosphate in sediment also stimulated the growth of algae resulting in release of reducing metabolites and further increase in I<sub>mn</sub>. The I<sub>mn</sub> of the 1.6% sediment treatment group increased to 30.1 mg/L on day 41 of culture. Correlation analysis showed that I<sub>mn</sub> was positively correlated with algal density, whereas total phosphorus content was significantly negatively correlated with algal density.