cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ekyk1i
title: Occurrence Download

description: A dataset containing 67234 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Pycnonotus jocosus (Linnaeus, 1758)",
 "TaxonKey is Pycnonotus jocosus jocosus",
 "TaxonKey is Pycnonotus jocosus pyrrhotis (Bonaparte, 1850)",
 "TaxonKey is Pycnonotus jocosus emeria (Linnaeus, 1758)",
 "TaxonKey is Pycnonotus jocosus monticola (Horsfield, 1840)",
 "TaxonKey is Pycnonotus jocosus whistleri Deignan, 1948",
 "TaxonKey is Pycnonotus jocosus pattani Deignan, 1948",
 "TaxonKey is Pycnonotus jocosus hainanensis (Hachisuka, 1939)",
 "TaxonKey is Pycnonotus jocosus fuscicaudatus (Gould, 1866)",
 "TaxonKey is Pycnonotus jocosus abuensis (Whistler, 1931)"
 ]
}

 The dataset includes 67234 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003121-170925132151566/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id404014.1
title: StrainInfo SI-ID 404014.1

description: StrainInfo dataset 404014 about a strain of Pseudomonas stutzeri. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.1594/pangaea.947846
title: Computed tomography analysis of multicorer SO268/1_6-1, core 16

description: Selected multicorer cores of R/V Sonne cruise SO268-1 and were scanned by a Toshiba Aquilion 64 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte with an x-ray source voltage of 120 kV and a current of 600 mA. The CT image stacks have a resolution of 0.35 mm in x/y-direction and 0.5 mm resolution in z-direction (0.3 mm reconstruction unit). Images were reconstructed using Toshiba's patented helical cone beam reconstruction technique (TCOT) and are provided in DICOM-format. The data were processed with the ZIB edition of the Amira software (version 2021.03; Stalling et al., 2005; http://amira.zib.de). Within Amira, the core liners, including about 2 mm of the core rims, were deleted from the data set. Mangan nodules with diameters &gt;1 mm, open bioturbation traces, an unidentified organism (only present in core SO268-2-200-1 MC18), the natural bioturbated and surficial homogenised sediment were segmented by a marker-based watershed segmentation and visualized in 3D. Subsequently, the sediment components were quantified (MaterialStatistics module; volume per slice) and the mean and standard deviation of the sediment x-ray attenuation (MaterialStatistics module; statistics per slice per label; to avoid marginal averaging effects the sediment label was reduced by three voxels) were determined.
DOI: 10.60712/si-id404015.1
title: StrainInfo SI-ID 404015.1

description: StrainInfo dataset 404015 about a strain of Vibrio. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.ijvi11
title: Occurrence Download

description: A dataset containing 646 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Touit batavicus (Boddaert, 1783)"
 ]
}

 The dataset includes 646 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000293-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id404016.1
title: StrainInfo SI-ID 404016.1

description: StrainInfo dataset 404016 about a strain of Paenibacillus taohuashanense. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.1594/pangaea.947882
title: Computed tomography analysis of multicorer SO268/1_26-1, core 15

description: Selected multicorer cores of R/V Sonne cruise SO268-1 and were scanned by a Toshiba Aquilion 64 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte with an x-ray source voltage of 120 kV and a current of 600 mA. The CT image stacks have a resolution of 0.35 mm in x/y-direction and 0.5 mm resolution in z-direction (0.3 mm reconstruction unit). Images were reconstructed using Toshiba's patented helical cone beam reconstruction technique (TCOT) and are provided in DICOM-format. The data were processed with the ZIB edition of the Amira software (version 2021.03; Stalling et al., 2005; http://amira.zib.de). Within Amira, the core liners, including about 2 mm of the core rims, were deleted from the data set. Mangan nodules with diameters &gt;1 mm, open bioturbation traces, an unidentified organism (only present in core SO268-2-200-1 MC18), the natural bioturbated and surficial homogenised sediment were segmented by a marker-based watershed segmentation and visualized in 3D. Subsequently, the sediment components were quantified (MaterialStatistics module; volume per slice) and the mean and standard deviation of the sediment x-ray attenuation (MaterialStatistics module; statistics per slice per label; to avoid marginal averaging effects the sediment label was reduced by three voxels) were determined.
DOI: 10.60712/si-id404017.1
title: StrainInfo SI-ID 404017.1

description: StrainInfo dataset 404017 about a strain of Pelosinus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.1594/pangaea.947892
title: Computed tomography analysis of multicorer SO268/1_39-1, core 14

description: Selected multicorer cores of R/V Sonne cruise SO268-1 and were scanned by a Toshiba Aquilion 64 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte with an x-ray source voltage of 120 kV and a current of 600 mA. The CT image stacks have a resolution of 0.35 mm in x/y-direction and 0.5 mm resolution in z-direction (0.3 mm reconstruction unit). Images were reconstructed using Toshiba's patented helical cone beam reconstruction technique (TCOT) and are provided in DICOM-format. The data were processed with the ZIB edition of the Amira software (version 2021.03; Stalling et al., 2005; http://amira.zib.de). Within Amira, the core liners, including about 2 mm of the core rims, were deleted from the data set. Mangan nodules with diameters &gt;1 mm, open bioturbation traces, an unidentified organism (only present in core SO268-2-200-1 MC18), the natural bioturbated and surficial homogenised sediment were segmented by a marker-based watershed segmentation and visualized in 3D. Subsequently, the sediment components were quantified (MaterialStatistics module; volume per slice) and the mean and standard deviation of the sediment x-ray attenuation (MaterialStatistics module; statistics per slice per label; to avoid marginal averaging effects the sediment label was reduced by three voxels) were determined.
DOI: 10.60712/si-id404113.1
title: StrainInfo SI-ID 404113.1

description: StrainInfo dataset 404113 about a strain of Klebsiella pneumoniae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.1594/pangaea.947895
title: Computed tomography analysis of multicorer SO268/1_39-1, core 16

description: Selected multicorer cores of R/V Sonne cruise SO268-1 and were scanned by a Toshiba Aquilion 64 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte with an x-ray source voltage of 120 kV and a current of 600 mA. The CT image stacks have a resolution of 0.35 mm in x/y-direction and 0.5 mm resolution in z-direction (0.3 mm reconstruction unit). Images were reconstructed using Toshiba's patented helical cone beam reconstruction technique (TCOT) and are provided in DICOM-format. The data were processed with the ZIB edition of the Amira software (version 2021.03; Stalling et al., 2005; http://amira.zib.de). Within Amira, the core liners, including about 2 mm of the core rims, were deleted from the data set. Mangan nodules with diameters &gt;1 mm, open bioturbation traces, an unidentified organism (only present in core SO268-2-200-1 MC18), the natural bioturbated and surficial homogenised sediment were segmented by a marker-based watershed segmentation and visualized in 3D. Subsequently, the sediment components were quantified (MaterialStatistics module; volume per slice) and the mean and standard deviation of the sediment x-ray attenuation (MaterialStatistics module; statistics per slice per label; to avoid marginal averaging effects the sediment label was reduced by three voxels) were determined.
DOI: 10.60712/si-id404114.1
title: StrainInfo SI-ID 404114.1

description: StrainInfo dataset 404114 about a strain of Gordonia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.1594/pangaea.947898
title: Computed tomography analysis of multicorer SO268/1_43-1, core 16

description: Selected multicorer cores of R/V Sonne cruise SO268-1 and were scanned by a Toshiba Aquilion 64 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte with an x-ray source voltage of 120 kV and a current of 600 mA. The CT image stacks have a resolution of 0.35 mm in x/y-direction and 0.5 mm resolution in z-direction (0.3 mm reconstruction unit). Images were reconstructed using Toshiba's patented helical cone beam reconstruction technique (TCOT) and are provided in DICOM-format. The data were processed with the ZIB edition of the Amira software (version 2021.03; Stalling et al., 2005; http://amira.zib.de). Within Amira, the core liners, including about 2 mm of the core rims, were deleted from the data set. Mangan nodules with diameters &gt;1 mm, open bioturbation traces, an unidentified organism (only present in core SO268-2-200-1 MC18), the natural bioturbated and surficial homogenised sediment were segmented by a marker-based watershed segmentation and visualized in 3D. Subsequently, the sediment components were quantified (MaterialStatistics module; volume per slice) and the mean and standard deviation of the sediment x-ray attenuation (MaterialStatistics module; statistics per slice per label; to avoid marginal averaging effects the sediment label was reduced by three voxels) were determined.
DOI: 10.60712/si-id404115.1
title: StrainInfo SI-ID 404115.1

description: StrainInfo dataset 404115 about a strain of Thermoactinomyces. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id404116.1
title: StrainInfo SI-ID 404116.1

description: StrainInfo dataset 404116 about a strain of Geodermatophilus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id404117.1
title: StrainInfo SI-ID 404117.1

description: StrainInfo dataset 404117 about a strain of Prevotella jejuni. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.1594/pangaea.947905
title: Computed tomography analysis of multicorer SO268/1_50-2, core 16

description: Selected multicorer cores of R/V Sonne cruise SO268-1 and were scanned by a Toshiba Aquilion 64 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte with an x-ray source voltage of 120 kV and a current of 600 mA. The CT image stacks have a resolution of 0.35 mm in x/y-direction and 0.5 mm resolution in z-direction (0.3 mm reconstruction unit). Images were reconstructed using Toshiba's patented helical cone beam reconstruction technique (TCOT) and are provided in DICOM-format. The data were processed with the ZIB edition of the Amira software (version 2021.03; Stalling et al., 2005; http://amira.zib.de). Within Amira, the core liners, including about 2 mm of the core rims, were deleted from the data set. Mangan nodules with diameters &gt;1 mm, open bioturbation traces, an unidentified organism (only present in core SO268-2-200-1 MC18), the natural bioturbated and surficial homogenised sediment were segmented by a marker-based watershed segmentation and visualized in 3D. Subsequently, the sediment components were quantified (MaterialStatistics module; volume per slice) and the mean and standard deviation of the sediment x-ray attenuation (MaterialStatistics module; statistics per slice per label; to avoid marginal averaging effects the sediment label was reduced by three voxels) were determined.
DOI: 10.60712/si-id404190.1
title: StrainInfo SI-ID 404190.1

description: StrainInfo dataset 404190 about a strain of Trujillonella endophytica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.1594/pangaea.947907
title: Computed tomography analysis of multicorer SO268/1_66-1, core 19

description: Selected multicorer cores of R/V Sonne cruise SO268-1 and were scanned by a Toshiba Aquilion 64 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte with an x-ray source voltage of 120 kV and a current of 600 mA. The CT image stacks have a resolution of 0.35 mm in x/y-direction and 0.5 mm resolution in z-direction (0.3 mm reconstruction unit). Images were reconstructed using Toshiba's patented helical cone beam reconstruction technique (TCOT) and are provided in DICOM-format. The data were processed with the ZIB edition of the Amira software (version 2021.03; Stalling et al., 2005; http://amira.zib.de). Within Amira, the core liners, including about 2 mm of the core rims, were deleted from the data set. Mangan nodules with diameters &gt;1 mm, open bioturbation traces, an unidentified organism (only present in core SO268-2-200-1 MC18), the natural bioturbated and surficial homogenised sediment were segmented by a marker-based watershed segmentation and visualized in 3D. Subsequently, the sediment components were quantified (MaterialStatistics module; volume per slice) and the mean and standard deviation of the sediment x-ray attenuation (MaterialStatistics module; statistics per slice per label; to avoid marginal averaging effects the sediment label was reduced by three voxels) were determined.
DOI: 10.60712/si-id404191.1
title: StrainInfo SI-ID 404191.1

description: StrainInfo dataset 404191 about a strain of Salinifilum ghardaiense. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.1594/pangaea.947912
title: Computed tomography analysis of multicorer SO268/1_75-1, core 17

description: Selected multicorer cores of R/V Sonne cruise SO268-1 and were scanned by a Toshiba Aquilion 64 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte with an x-ray source voltage of 120 kV and a current of 600 mA. The CT image stacks have a resolution of 0.35 mm in x/y-direction and 0.5 mm resolution in z-direction (0.3 mm reconstruction unit). Images were reconstructed using Toshiba's patented helical cone beam reconstruction technique (TCOT) and are provided in DICOM-format. The data were processed with the ZIB edition of the Amira software (version 2021.03; Stalling et al., 2005; http://amira.zib.de). Within Amira, the core liners, including about 2 mm of the core rims, were deleted from the data set. Mangan nodules with diameters &gt;1 mm, open bioturbation traces, an unidentified organism (only present in core SO268-2-200-1 MC18), the natural bioturbated and surficial homogenised sediment were segmented by a marker-based watershed segmentation and visualized in 3D. Subsequently, the sediment components were quantified (MaterialStatistics module; volume per slice) and the mean and standard deviation of the sediment x-ray attenuation (MaterialStatistics module; statistics per slice per label; to avoid marginal averaging effects the sediment label was reduced by three voxels) were determined.
DOI: 10.1594/pangaea.947914
title: Computed tomography analysis of multicorer SO268/1_80-1, core 12

description: Selected multicorer cores of R/V Sonne cruise SO268-1 and were scanned by a Toshiba Aquilion 64 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte with an x-ray source voltage of 120 kV and a current of 600 mA. The CT image stacks have a resolution of 0.35 mm in x/y-direction and 0.5 mm resolution in z-direction (0.3 mm reconstruction unit). Images were reconstructed using Toshiba's patented helical cone beam reconstruction technique (TCOT) and are provided in DICOM-format. The data were processed with the ZIB edition of the Amira software (version 2021.03; Stalling et al., 2005; http://amira.zib.de). Within Amira, the core liners, including about 2 mm of the core rims, were deleted from the data set. Mangan nodules with diameters &gt;1 mm, open bioturbation traces, an unidentified organism (only present in core SO268-2-200-1 MC18), the natural bioturbated and surficial homogenised sediment were segmented by a marker-based watershed segmentation and visualized in 3D. Subsequently, the sediment components were quantified (MaterialStatistics module; volume per slice) and the mean and standard deviation of the sediment x-ray attenuation (MaterialStatistics module; statistics per slice per label; to avoid marginal averaging effects the sediment label was reduced by three voxels) were determined.
DOI: 10.60712/si-id404192.1
title: StrainInfo SI-ID 404192.1

description: StrainInfo dataset 404192 about a strain of Geobacter. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.1594/pangaea.947915
title: Computed tomography analysis of multicorer SO268/1_85-1, core 18

description: Selected multicorer cores of R/V Sonne cruise SO268-1 and were scanned by a Toshiba Aquilion 64 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte with an x-ray source voltage of 120 kV and a current of 600 mA. The CT image stacks have a resolution of 0.35 mm in x/y-direction and 0.5 mm resolution in z-direction (0.3 mm reconstruction unit). Images were reconstructed using Toshiba's patented helical cone beam reconstruction technique (TCOT) and are provided in DICOM-format. The data were processed with the ZIB edition of the Amira software (version 2021.03; Stalling et al., 2005; http://amira.zib.de). Within Amira, the core liners, including about 2 mm of the core rims, were deleted from the data set. Mangan nodules with diameters &gt;1 mm, open bioturbation traces, an unidentified organism (only present in core SO268-2-200-1 MC18), the natural bioturbated and surficial homogenised sediment were segmented by a marker-based watershed segmentation and visualized in 3D. Subsequently, the sediment components were quantified (MaterialStatistics module; volume per slice) and the mean and standard deviation of the sediment x-ray attenuation (MaterialStatistics module; statistics per slice per label; to avoid marginal averaging effects the sediment label was reduced by three voxels) were determined.
DOI: 10.60712/si-id404193.1
title: StrainInfo SI-ID 404193.1

description: StrainInfo dataset 404193 about a strain of Roseomonas alkaliterrae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.1594/pangaea.947938
title: Computed tomography analysis of multicorer SO268/2_122-1, core 16

description: Selected multicorer cores of R/V Sonne cruise SO268-1 were scanned by a Toshiba Aquilion 64 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte with an x-ray source voltage of 120 kV and a current of 600 mA. The CT image stacks have a resolution of 0.35 mm in x/y-direction and 0.5 mm resolution in z-direction (0.3 mm reconstruction unit). Images were reconstructed using Toshiba's patented helical cone beam reconstruction technique (TCOT) and are provided in DICOM-format. The data were processed with the ZIB edition of the Amira software (version 2021.03; Stalling et al., 2005; http://amira.zib.de). Within Amira, the core liners, including about 2 mm of the core rims, were deleted from the data set. Mangan nodules with diameters &gt;1 mm, open bioturbation traces, an unidentified organism (only present in core SO268-2-200-1 MC18), the natural bioturbated and surficial homogenised sediment were segmented by a marker-based watershed segmentation and visualized in 3D. Subsequently, the sediment components were quantified (MaterialStatistics module; volume per slice) and the mean and standard deviation of the sediment x-ray attenuation (MaterialStatistics module; statistics per slice per label; to avoid marginal averaging effects the sediment label was reduced by three voxels) were determined.
DOI: 10.60712/si-id404018.1
title: StrainInfo SI-ID 404018.1

description: StrainInfo dataset 404018 about a strain of Turicimonas muris. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id404019.1
title: StrainInfo SI-ID 404019.1

description: StrainInfo dataset 404019 about a strain of Numidum massiliense. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id404020.1
title: StrainInfo SI-ID 404020.1

description: StrainInfo dataset 404020 about a strain of Methylophaga frappieri. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.