cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc28dmkw
title: CCDC 2097508: Experimental Crystal Structure Determination

description: Related Article: Ruiyao Wang|2021|CSD Communication|||
description: Related Article: Xiaocui Chen, Ruixue Zhou, Hao Zhou, Tianhao Yan, Lifeng Ding, Haifei Zhang, Ruiyao Wang|2022|J.Mol.Struct.|1265|133422|doi:10.1016/j.molstruc.2022.133422
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.19891759
title: Dataset for Non-Markovian dynamics of a single excitation within many-body dissipative systems

description: Dataset accompanying the "Non-Markovian dynamics of a single excitation within many-body dissipative systems" publication.
DOI: 10.6084/m9.figshare.20004555
title: Additional file 1 of Transcriptional profiling of transport mechanisms and regulatory pathways in rat choroid plexus

description: Additional file 1. Lists of RNAseq data.
DOI: 10.6084/m9.figshare.20004555.v1
title: Additional file 1 of Transcriptional profiling of transport mechanisms and regulatory pathways in rat choroid plexus

description: Additional file 1. Lists of RNAseq data.
DOI: 10.6084/m9.figshare.20004548
title: Additional file 10 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection

description: Additional file 10. Compilation the RBGOA biological functions which are significantly enriched in the epigenomic dataset for each time point (sheet 1 to 4) and comparison with RBGOA function from the transcriptomic data.
DOI: 10.6084/m9.figshare.20004548.v1
title: Additional file 10 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection

description: Additional file 10. Compilation the RBGOA biological functions which are significantly enriched in the epigenomic dataset for each time point (sheet 1 to 4) and comparison with RBGOA function from the transcriptomic data.
DOI: 10.6084/m9.figshare.20004551
title: Additional file 11 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection

description: Additional file 11. Details for the statistical analysis performed to adress the significance of the inheritence in DMRs patterns.
DOI: 10.6084/m9.figshare.20004551.v1
title: Additional file 11 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection

description: Additional file 11. Details for the statistical analysis performed to adress the significance of the inheritence in DMRs patterns.
DOI: 10.6084/m9.figshare.20004557.v1
title: Additional file 2 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection

description: Additional file 2. Quality of the metrics for omic analysis (sheet 1: transcriptomic, sheet 2: genetic, sheet 3: epigenomic).
DOI: 10.6084/m9.figshare.20004557
title: Additional file 2 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection

description: Additional file 2. Quality of the metrics for omic analysis (sheet 1: transcriptomic, sheet 2: genetic, sheet 3: epigenomic).
DOI: 10.6084/m9.figshare.20004563
title: Additional file 4 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection

description: Additional file 4. OTU tables for 16S barcoding analysis. Each sheet correspond to a different time point. This sheet also includes the results of LEfSe analysis and compiles the taxa which are statistically significantly enriched in the microbial community of ME-exposed or control oysters in larvae (sheet= LEfSe larval stages) and juveniles (sheet = LEfSe juvenile stages) based on a Kruskal-Wallis test pval&lt;0.05.
DOI: 10.6084/m9.figshare.20004563.v1
title: Additional file 4 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection

description: Additional file 4. OTU tables for 16S barcoding analysis. Each sheet correspond to a different time point. This sheet also includes the results of LEfSe analysis and compiles the taxa which are statistically significantly enriched in the microbial community of ME-exposed or control oysters in larvae (sheet= LEfSe larval stages) and juveniles (sheet = LEfSe juvenile stages) based on a Kruskal-Wallis test pval&lt;0.05.
DOI: 10.6084/m9.figshare.20004569
title: Additional file 6 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection

description: Additional file 6. Compilation of differentially expressed genes at the time point indicated (All DEGs = all the differentially expressed genes, Other sheets = Immune related genes).
DOI: 10.6084/m9.figshare.20004569.v1
title: Additional file 6 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection

description: Additional file 6. Compilation of differentially expressed genes at the time point indicated (All DEGs = all the differentially expressed genes, Other sheets = Immune related genes).
DOI: 10.6084/m9.figshare.20004566
title: Additional file 5 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection

description: Additional file 5. Results of two differential analyses comparing the proportion of OTUs: (1) ME exposed oysters vs control oysters and (2) ME water vs. control water.
DOI: 10.6084/m9.figshare.20004566.v1
title: Additional file 5 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection

description: Additional file 5. Results of two differential analyses comparing the proportion of OTUs: (1) ME exposed oysters vs control oysters and (2) ME water vs. control water.
DOI: 10.6084/m9.figshare.20004572.v1
title: Additional file 7 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection

description: Additional file 7. Compilation of the RBGOA biological function which are significantly enriched in the transcriptomic dataset for each time point.
DOI: 10.6084/m9.figshare.20004572
title: Additional file 7 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection

description: Additional file 7. Compilation of the RBGOA biological function which are significantly enriched in the transcriptomic dataset for each time point.
DOI: 10.6084/m9.figshare.20004575
title: Additional file 8 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection

description: Additional file 8. Compilation the differentially expressed genes related to metabolic functions at the time point indicated.
DOI: 10.6084/m9.figshare.20004575.v1
title: Additional file 8 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection

description: Additional file 8. Compilation the differentially expressed genes related to metabolic functions at the time point indicated.
DOI: 10.6084/m9.figshare.20004578
title: Additional file 9 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection

description: Additional file 9. Compilation of differentially methylated regions in any regions of the genomes (DMRs), within gene bodies (DMGs), within promoter regions (DMPs).
DOI: 10.6084/m9.figshare.20004578.v1
title: Additional file 9 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection

description: Additional file 9. Compilation of differentially methylated regions in any regions of the genomes (DMRs), within gene bodies (DMGs), within promoter regions (DMPs).
DOI: 10.6084/m9.figshare.20004609
title: Additional file 1 of Participation in a food assistance program and excessive weight gain: an evaluation of the Brazilian Worker’s Food Program in male and female manufacturing workers

description: Additional file 1.
DOI: 10.6084/m9.figshare.20004609.v1
title: Additional file 1 of Participation in a food assistance program and excessive weight gain: an evaluation of the Brazilian Worker’s Food Program in male and female manufacturing workers

description: Additional file 1.
DOI: 10.5519/qd.d8sa3vzr
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (843 records)
DOI: 10.6084/m9.figshare.20004630
title: Additional file 2 of Genetics of early-life head circumference and genetic correlations with neurological, psychiatric and cognitive outcomes

description: Additional file 2. Characteristics of discovery and replication studies.
DOI: 10.6084/m9.figshare.20004630.v1
title: Additional file 2 of Genetics of early-life head circumference and genetic correlations with neurological, psychiatric and cognitive outcomes

description: Additional file 2. Characteristics of discovery and replication studies.
DOI: 10.6084/m9.figshare.20004633.v1
title: Additional file 3 of Genetics of early-life head circumference and genetic correlations with neurological, psychiatric and cognitive outcomes

description: Additional file 3. Results of the discovery analysis for SNPs with P-values &lt;5 × 10−6.
DOI: 10.6084/m9.figshare.20004633
title: Additional file 3 of Genetics of early-life head circumference and genetic correlations with neurological, psychiatric and cognitive outcomes

description: Additional file 3. Results of the discovery analysis for SNPs with P-values &lt;5 × 10−6.
DOI: 10.6084/m9.figshare.20004639.v1
title: Additional file 4 of Genetics of early-life head circumference and genetic correlations with neurological, psychiatric and cognitive outcomes

description: Additional file 4. Results of the discovery analysis for SNPs with P-values &lt;5 × 10−6 for birth head circumference.
DOI: 10.6084/m9.figshare.20004639
title: Additional file 4 of Genetics of early-life head circumference and genetic correlations with neurological, psychiatric and cognitive outcomes

description: Additional file 4. Results of the discovery analysis for SNPs with P-values &lt;5 × 10−6 for birth head circumference.
DOI: 10.6084/m9.figshare.20004644
title: Additional file 10 of A glimpse into the past: phylogenesis and protein domain analysis of the group XIV of C-type lectins in vertebrates

description: Additional file 10: Supplementary file 3. CDS of one representative species per vertebrate order of CD248 extracellular domain.
DOI: 10.6084/m9.figshare.20004647
title: Additional file 11 of A glimpse into the past: phylogenesis and protein domain analysis of the group XIV of C-type lectins in vertebrates

description: Additional file 11: Supplementary file 4. CDS of one representative species per vertebrate order of Thrombomodulin extracellular domain.
DOI: 10.6084/m9.figshare.20004644.v1
title: Additional file 10 of A glimpse into the past: phylogenesis and protein domain analysis of the group XIV of C-type lectins in vertebrates

description: Additional file 10: Supplementary file 3. CDS of one representative species per vertebrate order of CD248 extracellular domain.
DOI: 10.6084/m9.figshare.20004647.v1
title: Additional file 11 of A glimpse into the past: phylogenesis and protein domain analysis of the group XIV of C-type lectins in vertebrates

description: Additional file 11: Supplementary file 4. CDS of one representative species per vertebrate order of Thrombomodulin extracellular domain.
DOI: 10.6084/m9.figshare.20004659.v1
title: Additional file 4 of A glimpse into the past: phylogenesis and protein domain analysis of the group XIV of C-type lectins in vertebrates

description: Additional file 4: Supplementary Table 1. List of protein (first sheet), CDS (second sheet), cDNA (third sheet) accession numbers used and genome accession number of Lethenteron camtschaticum, Entosphenus tridentatus, Eptatretus burgeri (fourth sheet).
DOI: 10.6084/m9.figshare.20004659
title: Additional file 4 of A glimpse into the past: phylogenesis and protein domain analysis of the group XIV of C-type lectins in vertebrates

description: Additional file 4: Supplementary Table 1. List of protein (first sheet), CDS (second sheet), cDNA (third sheet) accession numbers used and genome accession number of Lethenteron camtschaticum, Entosphenus tridentatus, Eptatretus burgeri (fourth sheet).
DOI: 10.6084/m9.figshare.20004662
title: Additional file 5 of A glimpse into the past: phylogenesis and protein domain analysis of the group XIV of C-type lectins in vertebrates

description: Additional file 5: Supplementary Table 2. Gnathostome CTLDcps loci synteny. List of the syntenic genes laying on the CD93/Thrombomodulin- (first sheet), CD248- (second sheet) and Clec14A- (third sheet) -bearing chromosomes in gnathostomes. Positions of genes that moved away from the chromosome are specified. § represents not found genes. # represents genes with an unplaced scaffold. * indicates chromosome disruption.
DOI: 10.6084/m9.figshare.20004662.v1
title: Additional file 5 of A glimpse into the past: phylogenesis and protein domain analysis of the group XIV of C-type lectins in vertebrates

description: Additional file 5: Supplementary Table 2. Gnathostome CTLDcps loci synteny. List of the syntenic genes laying on the CD93/Thrombomodulin- (first sheet), CD248- (second sheet) and Clec14A- (third sheet) -bearing chromosomes in gnathostomes. Positions of genes that moved away from the chromosome are specified. § represents not found genes. # represents genes with an unplaced scaffold. * indicates chromosome disruption.
DOI: 10.6084/m9.figshare.20004665
title: Additional file 6 of A glimpse into the past: phylogenesis and protein domain analysis of the group XIV of C-type lectins in vertebrates

description: Additional file 6: Supplementary Table 3. P. marinus gene synteny. Gene families laying on chromosome 6, 17 and 53 of P. marinus analyzed for conserved synteny with their gnathostome counterparts.
DOI: 10.6084/m9.figshare.20004668
title: Additional file 7 of A glimpse into the past: phylogenesis and protein domain analysis of the group XIV of C-type lectins in vertebrates

description: Additional file 7: Supplementary Table 4. Alternative topology test results. Eleven topologies tested with five different statistical methods (bp-RELL, p-KH, p-SH, c-ELW, p-AU). Tested tree topologies follow unconstrained and constrained trees reported in Supplementary Fig. 1. Highlighted rows are significant topologies.
DOI: 10.6084/m9.figshare.20004674
title: Additional file 9 of A glimpse into the past: phylogenesis and protein domain analysis of the group XIV of C-type lectins in vertebrates

description: Additional file 9: Supplementary file 2. CDS of one representative species per vertebrate order of Clec14A extracellular domain.
DOI: 10.6084/m9.figshare.20004665.v1
title: Additional file 6 of A glimpse into the past: phylogenesis and protein domain analysis of the group XIV of C-type lectins in vertebrates

description: Additional file 6: Supplementary Table 3. P. marinus gene synteny. Gene families laying on chromosome 6, 17 and 53 of P. marinus analyzed for conserved synteny with their gnathostome counterparts.
DOI: 10.6084/m9.figshare.20004671
title: Additional file 8 of A glimpse into the past: phylogenesis and protein domain analysis of the group XIV of C-type lectins in vertebrates

description: Additional file 8: Supplementary file 1. CDS of one representative species per vertebrate order of CD93 extracellular domain.
DOI: 10.6084/m9.figshare.20004671.v1
title: Additional file 8 of A glimpse into the past: phylogenesis and protein domain analysis of the group XIV of C-type lectins in vertebrates

description: Additional file 8: Supplementary file 1. CDS of one representative species per vertebrate order of CD93 extracellular domain.
DOI: 10.6084/m9.figshare.20004668.v1
title: Additional file 7 of A glimpse into the past: phylogenesis and protein domain analysis of the group XIV of C-type lectins in vertebrates

description: Additional file 7: Supplementary Table 4. Alternative topology test results. Eleven topologies tested with five different statistical methods (bp-RELL, p-KH, p-SH, c-ELW, p-AU). Tested tree topologies follow unconstrained and constrained trees reported in Supplementary Fig. 1. Highlighted rows are significant topologies.
DOI: 10.6084/m9.figshare.20004674.v1
title: Additional file 9 of A glimpse into the past: phylogenesis and protein domain analysis of the group XIV of C-type lectins in vertebrates

description: Additional file 9: Supplementary file 2. CDS of one representative species per vertebrate order of Clec14A extracellular domain.
DOI: 10.6084/m9.figshare.20004717
title: Additional file 1 of Glioblastoma microenvironment contains multiple hormonal and non-hormonal growth-stimulating factors

description: Additional file 1: Table 1. Proteins identified in cyst fluid from cystic glioblastomas. Cyst fluid was harvested from 12 cystic glioblastomas. Data are number of samples in which the protein was detected, log-10 values of raw data (area under the curve) from the mass spectrometry analysis; mean ± SD as calculated from the samples with positive identification of the protein in question. On the first page, proteins are listed according to abundance and number of positive samples in glioblastoma cyst fluid. On the second page, proteins are listed alphabetically. In the rightmost columns, data on peptide counts are given together with gene names and FASTA headers.
DOI: 10.6084/m9.figshare.20004717.v1
title: Additional file 1 of Glioblastoma microenvironment contains multiple hormonal and non-hormonal growth-stimulating factors

description: Additional file 1: Table 1. Proteins identified in cyst fluid from cystic glioblastomas. Cyst fluid was harvested from 12 cystic glioblastomas. Data are number of samples in which the protein was detected, log-10 values of raw data (area under the curve) from the mass spectrometry analysis; mean ± SD as calculated from the samples with positive identification of the protein in question. On the first page, proteins are listed according to abundance and number of positive samples in glioblastoma cyst fluid. On the second page, proteins are listed alphabetically. In the rightmost columns, data on peptide counts are given together with gene names and FASTA headers.
DOI: 10.6084/m9.figshare.20004744
title: Additional file 1 of Intron losses and gains in the nematodes

description: Additional file 1. Table S1. The genomic and taxonomical information of the studied nematode species. Table S2. The predicted number and rate of intron losses and gains of each branch. Table S3. Correlations of intron length among Caenorhabditis species. Table S4. Data for Fig. 2. Table S5. Data for Fig. 3. Table S6. The detailed information of 168 cases of recently gained introns in Caenorhabditis. Table S7. GO annotations of the intron-lost, intron-gained, and intron-conserved genes in C. elegans. Table S8. The project IDs of the RNA-Seq data used in this study.
DOI: 10.6084/m9.figshare.20004744.v1
title: Additional file 1 of Intron losses and gains in the nematodes

description: Additional file 1. Table S1. The genomic and taxonomical information of the studied nematode species. Table S2. The predicted number and rate of intron losses and gains of each branch. Table S3. Correlations of intron length among Caenorhabditis species. Table S4. Data for Fig. 2. Table S5. Data for Fig. 3. Table S6. The detailed information of 168 cases of recently gained introns in Caenorhabditis. Table S7. GO annotations of the intron-lost, intron-gained, and intron-conserved genes in C. elegans. Table S8. The project IDs of the RNA-Seq data used in this study.
DOI: 10.6084/m9.figshare.20004746
title: Additional file 5 of Does the growing of Bt maize change abundance or ecological function of non-target animals compared to the growing of non-GM maize? A systematic review

description: Additional file 5: Data selected for meta-analyses.
DOI: 10.6084/m9.figshare.20004749
title: Additional file 6 of Does the growing of Bt maize change abundance or ecological function of non-target animals compared to the growing of non-GM maize? A systematic review

description: Additional file 6: R-code for meta-analyses.
DOI: 10.6084/m9.figshare.20004746.v1
title: Additional file 5 of Does the growing of Bt maize change abundance or ecological function of non-target animals compared to the growing of non-GM maize? A systematic review

description: Additional file 5: Data selected for meta-analyses.
DOI: 10.6084/m9.figshare.20004749.v1
title: Additional file 6 of Does the growing of Bt maize change abundance or ecological function of non-target animals compared to the growing of non-GM maize? A systematic review

description: Additional file 6: R-code for meta-analyses.
DOI: 10.6084/m9.figshare.20004755
title: Additional file 8 of Does the growing of Bt maize change abundance or ecological function of non-target animals compared to the growing of non-GM maize? A systematic review

description: Additional file 8: ROSES form.
DOI: 10.6084/m9.figshare.20004755.v1
title: Additional file 8 of Does the growing of Bt maize change abundance or ecological function of non-target animals compared to the growing of non-GM maize? A systematic review

description: Additional file 8: ROSES form.
DOI: 10.6084/m9.figshare.20004801.v1
title: Additional file 8 of Single-cell RNA sequencing of mitotic-arrested prospermatogonia with DAZL::GFP chickens and revealing unique epigenetic reprogramming of chickens

description: Additional file 8: Table S3. List of differentially expressed genes among clusters (DEGs) (C1-C5).
DOI: 10.6084/m9.figshare.20004801
title: Additional file 8 of Single-cell RNA sequencing of mitotic-arrested prospermatogonia with DAZL::GFP chickens and revealing unique epigenetic reprogramming of chickens

description: Additional file 8: Table S3. List of differentially expressed genes among clusters (DEGs) (C1-C5).
DOI: 10.6084/m9.figshare.20004804
title: Additional file 9 of Single-cell RNA sequencing of mitotic-arrested prospermatogonia with DAZL::GFP chickens and revealing unique epigenetic reprogramming of chickens

description: Additional file 9: Table S4. List of DEGs between samples (E12 vs. hatch, E12 vs. E16, and E16 vs. hatch).
DOI: 10.6084/m9.figshare.20004804.v1
title: Additional file 9 of Single-cell RNA sequencing of mitotic-arrested prospermatogonia with DAZL::GFP chickens and revealing unique epigenetic reprogramming of chickens

description: Additional file 9: Table S4. List of DEGs between samples (E12 vs. hatch, E12 vs. E16, and E16 vs. hatch).
DOI: 10.5519/qd.1pinq2h2
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1834 records)