cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25442/hku.23666583.v1
title: <em>Supporting data for</em> “Peroxidase- and Photosensitizer-Mediated Proximity Labeling for Mitochondria-associated Transcriptome Analysis in Live Cells”

description: Folder 1: Confocal microscope data Includes confocal images in tif format. Short description: The data were collected using confocal microscope (Leica) to examine the colocalization of labeling sites and commercial organelle trackers. <br> Folder 2: Nuclear magnetic resonance spectroscopy (NMR) data Includes proton (1H) and carbon-13 (13C) spectra in MNOVA format. Short description: NMR data were collected using Bruker Advanced spectrometers to characterize the purity of our probes, and all NMR spectra were analyzed using MestReNova reader software. <br> Folder 3: UV-Vis absorption spectra data Includes absorbance analysis of our probes in xlsx format. Short description: UV-Vis absorption spectra were collected using Varian Cary 50 spectrometer to provide information of excitation wavelengths. <br> Folder 4: Spectrofluorometer (FL) data Includes: FL spectra data in xlsx format. Short description: FL spectra data were collected using the FS5 spectrofluorometer (Edinburgh Instruments). Probes displayed the fluorescence intensities and peaks. <br> Folder 5: Dynamic light scattering (DLS) data Includes: DLS data in xlsx format. Short description: DLS (Zetasizer Pro, Malvern, Germany) was utilized to determine the size distribution of our probes. The ZS Xplorer software was used to analyse the hydrodynamic diameter of each test.
DOI: 10.5281/zenodo.8170464
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Hans Riddervold Guldberg, http://www.wikidata.org/entity/Q106979038. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q106979038
DOI: 10.5281/zenodo.8170463
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Hans Riddervold Guldberg, http://www.wikidata.org/entity/Q106979038. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q106979038
DOI: 10.5281/zenodo.8170468
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Mihail Gușuleac, http://www.wikidata.org/entity/Q4153111. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q4153111
DOI: 10.5281/zenodo.8170470
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Julius von Haast, http://www.wikidata.org/entity/Q213922. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q213922
DOI: 10.5281/zenodo.8170469
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Julius von Haast, http://www.wikidata.org/entity/Q213922. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q213922
DOI: 10.5281/zenodo.8170476
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Elery Hamilton-Smith, http://www.wikidata.org/entity/Q5359456. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q5359456
DOI: 10.5281/zenodo.8170475
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Elery Hamilton-Smith, http://www.wikidata.org/entity/Q5359456. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q5359456
DOI: 10.6084/m9.figshare.22634902
title: AlphaFold - fasta and pdb files

description: These are the .fasta files used for ancestral sequence reconstruction in FastML, and .pdb files representing the highest confidence models produced by AlphaFold2.
DOI: 10.6084/m9.figshare.22634917
title: Phylogenetic raw data

description: These are the .fasta input files and the resulting output files from IQ-Tree 2
DOI: 10.6084/m9.figshare.22634917.v1
title: Phylogenetic raw data

description: These are the .fasta input files and the resulting output files from IQ-Tree 2
DOI: 10.6084/m9.figshare.22634956.v1
title: FastML output files

description: These are the FastML output files for ancestral sequence reconstruction
DOI: 10.6084/m9.figshare.22634956
title: FastML output files

description: These are the FastML output files for ancestral sequence reconstruction
DOI: 10.5281/zenodo.8170482
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Hermann Harms, http://www.wikidata.org/entity/Q62415. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q62415
DOI: 10.5281/zenodo.8170481
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Hermann Harms, http://www.wikidata.org/entity/Q62415. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q62415
DOI: 10.5281/zenodo.8170484
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Philippus van Harreveld, http://www.wikidata.org/entity/Q112645031. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q112645031
DOI: 10.5281/zenodo.8170483
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Philippus van Harreveld, http://www.wikidata.org/entity/Q112645031. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q112645031
DOI: 10.5281/zenodo.8170486
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Fredrik Hasselquist, http://www.wikidata.org/entity/Q720017. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q720017
DOI: 10.5281/zenodo.8170485
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Fredrik Hasselquist, http://www.wikidata.org/entity/Q720017. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q720017
DOI: 10.5281/zenodo.8170383
title: Most global gauging stations present biased estimations of total catchment discharge

description: This dataset includes the data generated for the main figures, the codes of the Mabcd model used to simulate catchment hydrological processes in this study, and the neural network model (NN2) trained to evaluate the Budyko parameter ω.
DOI: 10.6084/m9.figshare.23722188.v1
title: Additional file 3 of Integration of microbiome and Koch’s postulates to reveal multiple bacterial pathogens of whitish muscle syndrome in mud crab, Scylla paramamosain

description: Additional file 3. Bacteria. Second challenge. First challenge. Fungi.
DOI: 10.6084/m9.figshare.23722188
title: Additional file 3 of Integration of microbiome and Koch’s postulates to reveal multiple bacterial pathogens of whitish muscle syndrome in mud crab, Scylla paramamosain

description: Additional file 3. Bacteria. Second challenge. First challenge. Fungi.
DOI: 10.6084/m9.figshare.23722204
title: Additional file 4 of Correction: Quantification of hematopoietic stem and progenitor cells by targeted DNA methylation analysis

description: Additional file 4. Table S6. Application for NNLS model with 6 CpGs.
DOI: 10.6084/m9.figshare.23722204.v1
title: Additional file 4 of Correction: Quantification of hematopoietic stem and progenitor cells by targeted DNA methylation analysis

description: Additional file 4. Table S6. Application for NNLS model with 6 CpGs.
DOI: 10.6084/m9.figshare.23722209.v1
title: Additional file 1 of CamPype: an open-source workflow for automated bacterial whole-genome sequencing analysis focused on Campylobacter

description: Additional file 1: Genomic characteristics of the Campylobacter jejuni and Campylobacter coli isolates included in the first case study.
DOI: 10.6084/m9.figshare.23722209
title: Additional file 1 of CamPype: an open-source workflow for automated bacterial whole-genome sequencing analysis focused on Campylobacter

description: Additional file 1: Genomic characteristics of the Campylobacter jejuni and Campylobacter coli isolates included in the first case study.
DOI: 10.6084/m9.figshare.23722212
title: Additional file 1 of Longitudinal multi-omics study of palbociclib resistance in HR-positive/HER2-negative metastatic breast cancer

description: Additional file 1. Table S1. Sample-levelannotation including patient clinical attributes, tumor characteristics andgenomic/molecular features.
DOI: 10.6084/m9.figshare.23722212.v1
title: Additional file 1 of Longitudinal multi-omics study of palbociclib resistance in HR-positive/HER2-negative metastatic breast cancer

description: Additional file 1. Table S1. Sample-levelannotation including patient clinical attributes, tumor characteristics andgenomic/molecular features.
DOI: 10.6084/m9.figshare.23722215
title: Additional file 2 of Longitudinal multi-omics study of palbociclib resistance in HR-positive/HER2-negative metastatic breast cancer

description: Additional file 2. Table S2. PFS association statistics for clinical variables and molecular features e.g. p-value, HR ratio, median PFS.
DOI: 10.6084/m9.figshare.23722215.v1
title: Additional file 2 of Longitudinal multi-omics study of palbociclib resistance in HR-positive/HER2-negative metastatic breast cancer

description: Additional file 2. Table S2. PFS association statistics for clinical variables and molecular features e.g. p-value, HR ratio, median PFS.
DOI: 10.6084/m9.figshare.23722218.v1
title: Additional file 3 of Longitudinal multi-omics study of palbociclib resistance in HR-positive/HER2-negative metastatic breast cancer

description: Additional file 3. Table S3. PFS associationstatistics for gene signatures (GSVA scores).
DOI: 10.6084/m9.figshare.23722218
title: Additional file 3 of Longitudinal multi-omics study of palbociclib resistance in HR-positive/HER2-negative metastatic breast cancer

description: Additional file 3. Table S3. PFS associationstatistics for gene signatures (GSVA scores).
DOI: 10.6084/m9.figshare.23722224
title: Additional file 4 of Longitudinal multi-omics study of palbociclib resistance in HR-positive/HER2-negative metastatic breast cancer

description: Additional file 4. Table S4. Comparison of genomic alteration prevalence at BL vs. PD.
DOI: 10.6084/m9.figshare.23722224.v1
title: Additional file 4 of Longitudinal multi-omics study of palbociclib resistance in HR-positive/HER2-negative metastatic breast cancer

description: Additional file 4. Table S4. Comparison of genomic alteration prevalence at BL vs. PD.
DOI: 10.6084/m9.figshare.23722227.v1
title: Additional file 5 of Longitudinal multi-omics study of palbociclib resistance in HR-positive/HER2-negative metastatic breast cancer

description: Additional file 5. Table S5. Summary of oncogenic events in paired PDtumors. Endocrine therapy: endocrine therapy in combination with Palbo treatment.
DOI: 10.6084/m9.figshare.23722227
title: Additional file 5 of Longitudinal multi-omics study of palbociclib resistance in HR-positive/HER2-negative metastatic breast cancer

description: Additional file 5. Table S5. Summary of oncogenic events in paired PDtumors. Endocrine therapy: endocrine therapy in combination with Palbo treatment.
DOI: 10.6084/m9.figshare.23722252
title: Additional file 2 of Impact of the SARS-CoV-2 nucleocapsid 203K/204R mutations on the inflammatory immune response in COVID-19 severity

description: Additional file 2: Table S1. Demorgraphic and clinical information of all samples. Table S2. All significant DE genes (KR-patients versus Healthy). Table S3. All significant DE genes (RG-patients versus Healthy). Table S4. All DE genes (KR-patients versus RG-patients ). Table S5. Transcriptome Pathways enrichment (biological processes). Table S6. Significant DE genes KR-VLP versus control. Table S7. Significant DE genes D614G-VLP versus control. Table S8. Significant DE genes D614G-KR-VLP versus control. Table S9. Significant DE genes WT-VLP versus control. Table S10. Pathways enrichment (biological processes). Table S11. All DE proteins in KR, D614G-KR, and D614G versus WT. Table S12. Proteome Pathways enrichment (biological processes).
DOI: 10.6084/m9.figshare.23722252.v1
title: Additional file 2 of Impact of the SARS-CoV-2 nucleocapsid 203K/204R mutations on the inflammatory immune response in COVID-19 severity

description: Additional file 2: Table S1. Demorgraphic and clinical information of all samples. Table S2. All significant DE genes (KR-patients versus Healthy). Table S3. All significant DE genes (RG-patients versus Healthy). Table S4. All DE genes (KR-patients versus RG-patients ). Table S5. Transcriptome Pathways enrichment (biological processes). Table S6. Significant DE genes KR-VLP versus control. Table S7. Significant DE genes D614G-VLP versus control. Table S8. Significant DE genes D614G-KR-VLP versus control. Table S9. Significant DE genes WT-VLP versus control. Table S10. Pathways enrichment (biological processes). Table S11. All DE proteins in KR, D614G-KR, and D614G versus WT. Table S12. Proteome Pathways enrichment (biological processes).
DOI: 10.6084/m9.figshare.23722263
title: Additional file 1 of Characterizing the polygenic architecture of complex traits in populations of East Asian and European descent

description: Additional file 1: Supplemental Tables.
DOI: 10.6084/m9.figshare.23722263.v1
title: Additional file 1 of Characterizing the polygenic architecture of complex traits in populations of East Asian and European descent

description: Additional file 1: Supplemental Tables.
DOI: 10.6084/m9.figshare.23722333.v1
title: Additional file 3 of Does human milk composition predict later risk of obesity? A systematic review

description: Additional file 3. Study Characteristics. Summary of all included study characteristics.
DOI: 10.6084/m9.figshare.23722333
title: Additional file 3 of Does human milk composition predict later risk of obesity? A systematic review

description: Additional file 3. Study Characteristics. Summary of all included study characteristics.
DOI: 10.6084/m9.figshare.23722336.v1
title: Additional file 4 of Does human milk composition predict later risk of obesity? A systematic review

description: Additional file 4. Obesity Study Findings. Summary of all included studies with a measure of human milk composition and obesity. Where significant findings were found, the results were displayed.
DOI: 10.6084/m9.figshare.23722336
title: Additional file 4 of Does human milk composition predict later risk of obesity? A systematic review

description: Additional file 4. Obesity Study Findings. Summary of all included studies with a measure of human milk composition and obesity. Where significant findings were found, the results were displayed.
DOI: 10.6084/m9.figshare.23722339
title: Additional file 5 of Does human milk composition predict later risk of obesity? A systematic review

description: Additional file 5. Body Composition Study Findings. Summary of all included studies with a measure of human milk composition and measures of body composition. Where significant findings were found, the results were displayed.
DOI: 10.6084/m9.figshare.23722339.v1
title: Additional file 5 of Does human milk composition predict later risk of obesity? A systematic review

description: Additional file 5. Body Composition Study Findings. Summary of all included studies with a measure of human milk composition and measures of body composition. Where significant findings were found, the results were displayed.
DOI: 10.17171/1-1-4384
title: Image of Dialface ID 547
title: Rhodes, Inventory Nr. APX201

description: Photographs of the sundial in APX201 in the Archaeological Museum of Rhodes,(object-ID 504 in the database on Greek and Roman sundials BSDP0001). Camera: Nikon D800; date: 23.09.2013.
description: Ancient Sundials
DOI: 10.17171/1-1-4385
title: Image of Dialface ID 547
title: Rhodes, Inventory Nr. APX201

description: Photographs of the sundial in APX201 in the Archaeological Museum of Rhodes,(object-ID 504 in the database on Greek and Roman sundials BSDP0001). Camera: Nikon D800; date: 23.09.2013.
description: Ancient Sundials
DOI: 10.17171/1-1-4386
title: Image of Dialface ID 547
title: Rhodes, Inventory Nr. APX201

description: Photographs of the sundial in APX201 in the Archaeological Museum of Rhodes,(object-ID 504 in the database on Greek and Roman sundials BSDP0001). Camera: Nikon D800; date: 23.09.2013.
description: Ancient Sundials
DOI: 10.17171/1-1-4387
title: Image of Dialface ID 547
title: Rhodes, Inventory Nr. APX201

description: Photographs of the sundial in APX201 in the Archaeological Museum of Rhodes,(object-ID 504 in the database on Greek and Roman sundials BSDP0001). Camera: Nikon D800; date: 23.09.2013.
description: Ancient Sundials
DOI: 10.17171/1-1-4388
title: Image of Dialface ID 547
title: Rhodes, Inventory Nr. APX201

description: Photographs of the sundial in APX201 in the Archaeological Museum of Rhodes,(object-ID 504 in the database on Greek and Roman sundials BSDP0001). Camera: Nikon D800; date: 23.09.2013.
description: Ancient Sundials
DOI: 10.17171/1-1-4389
title: Image of Dialface ID 547
title: Rhodes, Inventory Nr. APX201

description: Photographs of the sundial in APX201 in the Archaeological Museum of Rhodes,(object-ID 504 in the database on Greek and Roman sundials BSDP0001). Camera: Nikon D800; date: 23.09.2013.
description: Ancient Sundials
DOI: 10.17171/1-1-4390
title: Image of Dialface ID 547
title: Rhodes, Inventory Nr. APX201

description: Photographs of the sundial in APX201 in the Archaeological Museum of Rhodes,(object-ID 504 in the database on Greek and Roman sundials BSDP0001). Camera: Nikon D800; date: 23.09.2013.
description: Ancient Sundials
DOI: 10.17171/1-1-4391
title: Image of Dialface ID 547
title: Rhodes, Inventory Nr. APX201

description: Photographs of the sundial in APX201 in the Archaeological Museum of Rhodes,(object-ID 504 in the database on Greek and Roman sundials BSDP0001). Camera: Nikon D800; date: 23.09.2013.
description: Ancient Sundials
DOI: 10.17171/1-1-4393
title: Image of Dialface ID 547
title: Rhodes, Inventory Nr. APX201

description: Photographs of the sundial in APX201 in the Archaeological Museum of Rhodes,(object-ID 504 in the database on Greek and Roman sundials BSDP0001). Camera: Nikon D800; date: 23.09.2013.
description: Ancient Sundials
DOI: 10.17171/1-1-4394
title: Image of Dialface ID 547
title: Rhodes, Inventory Nr. APX201

description: Photographs of the sundial in APX201 in the Archaeological Museum of Rhodes,(object-ID 504 in the database on Greek and Roman sundials BSDP0001). Camera: Nikon D800; date: 23.09.2013.
description: Ancient Sundials
DOI: 10.17171/1-1-4395
title: Dialface ID 547
title: Point Selection

description: Surfaces extracted from model BSDP0164 (ObjID 504)
description: Ancient Sundials
DOI: 10.17171/1-1-4396
title: Dialface ID 547
title: Point Selection

description: Surfaces extracted from model BSDP0164 (ObjID 504)
description: Ancient Sundials
DOI: 10.17171/1-1-4397
title: Dialface ID 547
title: Point Selection

description: Surfaces extracted from model BSDP0164 (ObjID 504)
description: Ancient Sundials
DOI: 10.17171/1-1-4398
title: Dialface ID 547
title: Point Selection

description: Surfaces extracted from model BSDP0164 (ObjID 504)
description: Ancient Sundials
DOI: 10.17171/1-1-4399
title: Dialface ID 547
title: Point Selection

description: Surfaces extracted from model BSDP0164 (ObjID 504)
description: Ancient Sundials
DOI: 10.17171/1-1-4400
title: Dialface ID 547
title: Point Selection

description: Surfaces extracted from model BSDP0164 (ObjID 504)
description: Ancient Sundials
DOI: 10.17171/1-1-4401
title: Dialface ID 547
title: Point Selection

description: Surfaces extracted from model BSDP0164 (ObjID 504)
description: Ancient Sundials
DOI: 10.17171/1-1-4402
title: Dialface ID 547
title: Point Selection

description: Surfaces extracted from model BSDP0164 (ObjID 504)
description: Ancient Sundials
DOI: 10.17171/1-1-4403
title: Dialface ID 547
title: Point Selection

description: Surfaces extracted from model BSDP0164 (ObjID 504)
description: Ancient Sundials
DOI: 10.17171/1-1-4404
title: Dialface ID 547
title: Point Selection

description: Surfaces extracted from model BSDP0164 (ObjID 504)
description: Ancient Sundials
DOI: 10.17171/1-1-4405
title: Dialface ID 547
title: Point Selection

description: Surfaces extracted from model BSDP0164 (ObjID 504)
description: Ancient Sundials
DOI: 10.17171/1-1-4406
title: Dialface ID 547
title: Point Selection

description: Surfaces extracted from model BSDP0164 (ObjID 504)
description: Ancient Sundials
DOI: 10.17171/1-1-4409
title: 3D-Model of Dialface ID 548
title: Rhodes, Inventory Nr. APX203

description: 3D Model of the sundial APX203 in the Archaeological Museum of Rhodes, Greece (Object-ID 505 in the database on Greek and Roman sundials BSDP0001); generated with ATOS Compact Scan 5M; date: September 2013.
description: Ancient Sundials
DOI: 10.17171/1-1-4410
title: Image of Dialface ID 548
title: Rhodes, Inventory Nr. APX203

description: Photographs of the sundial in APX203 in the Archaeological Museum of Rhodes,(object-ID 505 in the database on Greek and Roman sundials BSDP0001). Camera: Nikon D800; date: 23.09.2013.
description: Ancient Sundials
DOI: 10.17171/1-1-4411
title: Image of Dialface ID 548
title: Rhodes, Inventory Nr. APX203

description: Photographs of the sundial in APX203 in the Archaeological Museum of Rhodes,(object-ID 505 in the database on Greek and Roman sundials BSDP0001). Camera: Nikon D800; date: 23.09.2013.
description: Ancient Sundials
DOI: 10.17171/1-1-4412
title: Image of Dialface ID 548
title: Rhodes, Inventory Nr. APX203

description: Photographs of the sundial in APX203 in the Archaeological Museum of Rhodes,(object-ID 505 in the database on Greek and Roman sundials BSDP0001). Camera: Nikon D800; date: 23.09.2013.
description: Ancient Sundials