cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.68hv7
title: Data from: Genome-wide genotyping uncovers genetic profiles and history of the Russian cattle breeds

description: One of the most economically important areas within the Russian
 agricultural sector is dairy and beef cattle farming contributing about
 $11 billion to the Russian economy annually. Trade connections, selection
 and breeding have resulted in the establishment of a number of breeds that
 are presumably adapted to local climatic conditions. Little however is
 known about the ancestry and history of Russian native cattle. To address
 this question, we genotyped 274 individuals from 18 breeds bred in Russia
 and compared them to 135 additional breeds from around the world that had
 been genotyped previously. Our results suggest a shared ancestry between
 most of the Russian cattle and European taurine breeds, apart from a few
 breeds that shared ancestry with the Asian taurines. The Yakut cattle,
 belonging to the latter group, was found to be the most diverged breed in
 the whole combined dataset according to structure results. Haplotype
 sharing further suggests that the Russian cattle can be divided into four
 major clusters reflecting ancestral relations with other breeds. Herein,
 we therefore shed light on to the history of Russian cattle and identified
 closely related breeds to those from Russia. Our results will facilitate
 future research on detecting signatures of selection in cattle genomes and
 eventually inform future genetics-assisted livestock breeding programs in
 Russia and in other countries.
description: Russian cattle breed
 genotypes from Yurchenko et al. 2017A set of 26,740 high
 quality SNPs genotyped on 322 samples from 19 cattle breeds used to reveal
 origins and diversity within the Russian native cattle breeds when
 combined with world breed genotypes from Decker et al., 2014 and Iso-Touru
 et al., 2016.Russian_cattle_breeds_Yurchenko_2017.zip
DOI: 10.5061/dryad.pt7r4
title: Data from: How disturbance and dispersal influence intraspecific structure

description: 1. Recent studies have suggested that spatial patterns of intraspecific
 diversity can be influenced by density-dependent processes, which can
 inhibit effective migration of new lineages to established populations.
 How mechanisms such as dispersal and disturbance influence these processes
 is, however, still poorly understood. 2. We hypothesised that i) species
 with leptokurtic dispersal (frequent on small scales but rare on larger
 scales) would show no spatial structure on small scales and strong
 structure on large scales, and ii) disturbance would influence the chance
 of genetic turnover in a population. 3. We tested these hypotheses using
 empirical genetic (mtDNA) data from field observations of a model taxon
 (the buoyant, forest-forming kelp Durvillaea, which exhibits leptokurtic
 dispersal distribution), and by conducting simulation analyses. 4. Our
 data supported the first hypothesis, with no spatial structure detected on
 fine (metres) scales despite evidence of strong structure on larger (10s
 to 100s kms) scales. The second hypothesis was also supported, with
 simulations showing that disturbance increased the rate at which structure
 developed, and reduced the time to fixation (monopolisation by a single
 lineage). The chance of any lineage reaching fixation was directly related
 to its initial proportion in the population, and this relationship was
 unaffected by changes in disturbance size or dispersal capacity. We
 conclude that, in the absence of selection, extirpation is typically a
 prerequisite for population-genetic ‘turnover’, with remnant (refugial)
 individuals otherwise outnumbering immigrants. 5. Synthesis: Disturbance
 plays a critical role in releasing density-dependent blocks to
 colonisation, and thus enables lineage turnover within species. Our
 results indicate that although both disturbance size and dispersal
 capacity play important roles in the formation of spatial structure within
 species, unless a population is totally extirpated, establishment of
 genetic lineages from elsewhere (turnover) is unlikely even for species
 that can disperse well.
description: Fraser2017DataZipped folder containing all outputs from simulation analyses. See 'Readme' file for explanation of model parameter settings.
DOI: 10.5061/dryad.33hc6
title: Data from: Does dynamic stability govern propulsive force generation in human walking?

description: Before succumbing to slower speeds, older adults may walk with a
 diminished push-off to prioritize stability over mobility. However, direct
 evidence for trade-offs between push-off intensity and balance control in
 human walking, independent of changes in speed, has remained elusive. As a
 critical first step, we conducted two experiments to investigate: (i) the
 independent effects of walking speed and propulsive force (FP) generation
 on dynamic stability in young adults, and (ii) the extent to which young
 adults prioritize dynamic stability in selecting their preferred
 combination of walking speed and FP generation. Subjects walked on a
 force-measuring treadmill across a range of speeds as well as at constant
 speeds while modulating their FP according to a visual biofeedback
 paradigm based on real-time force measurements. In contrast to
 improvements when walking slower, walking with a diminished push-off
 worsened dynamic stability by up to 32%. Rather, we find that young adults
 adopt an FP at their preferred walking speed that maximizes dynamic
 stability. One implication of these findings is that the onset of a
 diminished push-off in old age may independently contribute to poorer
 balance control and precipitate slower walking speeds.
description: Subject
 DataFile contains individual
 subject time series of sacral marker position data, captured at 100 Hz and
 reported in mm. Those time series for Experiments 1 and 2 are organized
 under separate tabs. Each tab is organized by headers representing
 different experimental conditions. Under each condition header, X, Y, and
 Z correspond to the medio-lateral, anterior-posterior, and vertical
 directions, respectively.
DOI: 10.5061/dryad.6j336
title: Data from: Rapid transformation in the braincase of sauropod dinosaurs: integrated evolution of the braincase and neck in early sauropods?

description: Sauropod dinosaurs were quadrupedal herbivores with a highly specialized
 body plan that attained the largest masses of any terrestrial vertebrates.
 Recent discoveries have shown that key traits associated with sauropod
 gigantism appeared stepwise during the Late Triassic and Early Jurassic in
 evolutionary ‘cascades’ of associated changes, in which a ‘head and neck’
 cascade has been suggested as an important module. Here, we investigate
 the evolutionary transformation of the sauropodomorph braincase, using
 discrete anatomical characters, prompted by the reanalysis of a Middle
 Jurassic (Bathonian) sauropodiform braincase from England. Our analysis
 shows that sauropod braincases are highly distinct, and occupy a different
 region of morphospace than their evolutionary relatives. This resulted
 from anatomical transformations including a set of changes in the surface
 attachments of craniocervical musculature, which may indicate integrated
 evolution between neck elongation and transformation in braincase anatomy.
 Neck elongation in Late Triassic and Early or Middle Jurassic taxa is
 potentially associated with episodes of skull reduction, indicating that
 the ‘head and neck’ cascade was activated more than once in the
 evolutionary history of Sauropodomorpha. The re-activation of this cascade
 in the Jurassic may have impacted on the differential survival of
 sauropodomorph lineages through the Early and Middle Jurassic.
description: Data Matrix - tnt
 fileAnalysis without
 neosauropodan taxa. see File "Phylogenetic analysis" for more
 information.matrixbronzatibensonrauhut.tntData Matrix - Discrete character taxon matrix analysesData matrix containing the additional five neosauropodan taxa - used in the discrete character taxon matrix analysesmatrixbraincasewithneosauropodaResults - Evolutionary rates 1Results of the analysis of rates of evolution when the Oxford Braincase and Cetiosaurus are treated as distinct OTUsESM_2_-_Evolutionary_Rates_-_Oxford_Braincase_and_Cetiosaurs_as_distinct_OTUs.pdfResults - Evolutionary rates 2Results of the analysis of rates of evolution when the Oxford Braincase and Cetiosaurus are combined in a single OTUESM_3_-_Evolutionary_Rates_-_Oxford_Braincase_as_Cetiosaurus.pdfPhylogenetic AnalysisDetails of the phylogenetic analysis: details of the data matrix used in the analysis, character list, strict consensus tree, reduced strict consensus tree.ESM_1_-_Phylogenetic_Analysis.docx
DOI: 10.5061/dryad.dk551
title: Data from: How maternal investment varies with environmental factors and the age and physiological state of wild tsetse Glossina pallidipes and Glossina morsitans morsitans

description: Theory suggests females should optimize resource allocation across
 reproductive bouts to maximize lifetime reproduction, balancing current
 and future reproductive efforts according to physiological state and
 projected survival and reproduction. Tests of these ideas focus on
 long-lived vertebrates: few measure age-related reproductive output in
 iteroparous invertebrates, or partition reserves between those allocated
 to offspring versus mothers. We investigated how maternal age, and
 environmental and physiological factors influence reproductive investment
 in wild tsetse, Glossina pallidipes Austen and G. morsitans morsitans
 Westwood. Tsetse provide a tractable system to measure reproductive
 allocation. Females exhibit high maternal investment, producing single,
 large offspring that rely exclusively on maternal reserves. We find that
 mothers in better physiological condition and experiencing cooler
 temperatures produce larger offspring. Pupal size increases significantly
 but weakly with age. In both species, females with less fat invest
 proportionately more in offspring. Post-partum fat decreases in flies with
 badly frayed wings: poor flight capability may limit their feeding
 efficiency, or they may sacrifice more reserves as a terminal investment.
 Our results support evidence that offspring size increases with maternal
 size, investment depends on the environment, and females with lower
 chances of future reproduction invest more into current offspring. We
 discuss the implications of maternal effects for predicting vector
 population responses to environmental change.
description: Physiological status of
 tsetse mothers and offspring at larvipositionThe set consists of the
 physiological attributes of female tsetse Glossina pallidipes and the
 larva that they have just produced, or are just about to produce. For the
 mothers data are provide on the results of ovarian dissections carried out
 on the flies – including the sizes of the two largest oocytes in the
 paired ovaries, and the contents and size of the uterus. The length and
 degree of fray of the wings are also measured and used with the ovarian
 dissection information to assess the ovarian and chronological ages of the
 fly. The dry weight, fat free dry weight and haematin contents of thorax
 and abdomen for the adult females is also given. For the pupae the dry
 weight and fat-free dry weight are provided. Various meteorological data
 are also produced. The Stata data set has a key identifying each of the
 variables.burrows.dta
DOI: 10.5061/dryad.8j40q
title: Data from: Early spring phytoplankton dynamics in the western Antarctic Peninsula

description: The Palmer Long-Term Ecological Research program has sampled waters of the
 western Antarctic Peninsula (wAP) annually each summer since 1990.
 However, information about the wAP prior to the peak of the phytoplankton
 bloom in January is sparse. Here we present results from a spring process
 cruise that sampled the wAP in the early stages of phytoplankton bloom
 development in 2014. Sea ice concentrations were high on the shelf
 relative to non-shelf waters, especially toward the south. Macronutrients
 were high and non-limiting to phytoplankton growth in both shelf and
 non-shelf waters, while dissolved iron concentrations were high only on
 the shelf. Phytoplankton were in good physiological condition throughout
 the wAP, although biomass on the shelf was uniformly low, presumably
 because of heavy sea ice cover. In contrast, an early stage phytoplankton
 bloom was observed beneath variable sea ice cover just seaward of the
 shelf break. Chlorophyll a concentrations in the bloom reached 2 mg m−3
 within a 100 to 150 km band between the SBACC and SACCF. The location of
 the bloom appeared to be controlled by a balance between enhanced vertical
 mixing at the position of the two fronts and increased stratification due
 to melting sea ice between them. Unlike summer, when diatoms
 overwhelmingly dominate the phytoplankton population of the wAP, the
 haptophyte Phaeocystis antarctica dominated in spring, although diatoms
 were common. These results suggest that factors controlling phytoplankton
 abundance and composition change seasonally and may differentially affect
 phytoplankton populations as environmental conditions within the wAP
 region continue to change.
description: CTD Profile
 DataCTD Sensor Profile Data
 Cruise NBP1409.nbp1409_ctd.txtCruise Bottle FileBottle file in WOCE WHP Exchange Format. Contains data from samples collected from Niskin bottles and CTD sensor data from cruise NBP1409.NBP1409_Arrigo_2017JC013281_hy1.csv
DOI: 10.17632/4wcmck7nz6
title: Replication _ Green Bond Performance Under ESG Uncertainty: Nonlinear Time–Frequency Quantile Analysis

description: This replication package provides all data, code, and instructions required to reproduce the empirical results of the above-mentioned research paper. The study employs a wavelet-based quantile-on-quantile (QQ) regression framework to analyze the multi-scale, asymmetric, and time-varying relationship between ESG-based sustainability uncertainty and global green bond market returns. This package is designed to ensure transparency and facilitate independent verification of the statistical findings.This replication package provides all data, code, and instructions required to reproduce the empirical results of the above-mentioned research paper. The study employs a wavelet-based quantile-on-quantile (QQ) regression framework to analyze the multi-scale, asymmetric, and time-varying relationship between ESG-based sustainability uncertainty and global green bond market returns. This package is designed to ensure transparency and facilitate independent verification of the statistical findings.
DOI: 10.5061/dryad.31sm2
title: Data from: Host traits drive viral life histories across phytoplankton viruses

description: Viruses are integral to ecological and evolutionary processes, but we have
 a poor understanding of what drives variation in key traits across diverse
 viruses. For lytic viruses, burst size, latent period, and genome size are
 primary characteristics controlling host-virus dynamics. Here we
 synthesize data on these traits for 75 strains of phytoplankton viruses,
 which play an important role in global biogeochemistry. We find that
 primary traits of the host (genome size, growth rate) explain 40-50% of
 variation in burst size and latent period. Specifically, burst size and
 latent period both exhibit saturating relationships vs. the host:virus
 genome size ratio, with both traits increasing at low genome size ratios
 while showing no relationship at high size ratios. In addition, latent
 period declines as host growth rate increases. We analyze a model of
 latent period evolution to explore mechanisms that could cause these
 patterns. The model predicts that burst size may often be set by the host
 genomic resources available for viral construction, while latent period
 evolves to permit this maximal burst size, modulated by host metabolic
 rate. These results suggest that general mechanisms may underlie the
 evolution of diverse viruses. Future extensions of this work could help
 explain viral regulation of host populations, viral influence on community
 structure and diversity, and viral roles in biogeochemical cycles.
description: Appendix Table
 S1Appendix_Table_S1.xlsxSupplementary Figuressupplementary_figures.pdfExample model code in Rmodel.example.code.amnat.R
DOI: 10.17632/4wcmck7nz6.2
title: Replication _ Green Bond Performance Under ESG Uncertainty: Nonlinear Time–Frequency Quantile Analysis

description: This replication package provides all data, code, and instructions required to reproduce the empirical results of the above-mentioned research paper. The study employs a wavelet-based quantile-on-quantile (QQ) regression framework to analyze the multi-scale, asymmetric, and time-varying relationship between ESG-based sustainability uncertainty and global green bond market returns. This package is designed to ensure transparency and facilitate independent verification of the statistical findings.This replication package provides all data, code, and instructions required to reproduce the empirical results of the above-mentioned research paper. The study employs a wavelet-based quantile-on-quantile (QQ) regression framework to analyze the multi-scale, asymmetric, and time-varying relationship between ESG-based sustainability uncertainty and global green bond market returns. This package is designed to ensure transparency and facilitate independent verification of the statistical findings.
DOI: 10.5061/dryad.dt940
title: Data from: Seed dispersal syndromes in the Madagascan flora: The unusual importance of primates

description: Madagascar is one of the most threatened biodiversity hotspots, and
 protection of its biodiversity is becoming increasingly urgent as
 deforestation of the island continues. For the long-term success of
 conservation efforts it is essential that key ecological processes, such
 as seed dispersal, are protected and restored. Therefore, the
 identification of ecological gaps is a vital task. For Madagascar, only
 little is known about plant–animal interactions, and traditional methods
 of ecological research are too time-consuming to provide crucial
 information about breakdowns in these interactions. To identify likely
 dispersal gaps we therefore used a theoretical approach to analyse
 plant–disperser interactions in Madagascar. We used data science tools to
 impute missing data on relevant plant traits to subsequently predict the
 most likely dispersal agents for each of Madagascar’s endemic plant
 species. We found that 38% of the endemic species (N = 8,784) are
 endozoochorous, and among these 26–41% display a primate syndrome and
 17–19% a bird syndrome (depending on the definition of syndromes). This
 lower percentage of endozoochorous species and higher percentage of
 species with a primate syndrome in Madagascar compared to other tropical
 areas reflects the unusual disperser guild on the island. Only five bird
 species but 20 lemur species are frugivorous, and 16 of those lemur
 species are currently threatened with extinction. The disappearance of
 frugivorous lemurs would significantly change the vegetation dynamics of
 Madagascar’s ecosystems, and a high proportion of Madagascar’s endemic
 plants would enter an extinction vortex.
description: Madagascan plant
 traitsData on traits of
 endemic Madagascan plant species before and after imputation of missing
 values (using multivariate imputations by chained equations). Data were
 compiled from the literature, public databases (Madagascar Catalogue,
 2013) and examination of herbarium specimens at the Royal Botanic Gardens,
 Kew (2,519 specimens) and at the Muséum National d’Histoire Naturelle,
 Paris (364 specimens).Appendix-Plant-traits.xlsx
DOI: 10.17632/rtddhb9ng6
title: Artificial habitats provide refuge for a threatened freshwater mussel in south-west Australia: DATA

description: Context: Worldwide modifications of river systems, closely tied to human development, has led to a proliferation of artificial waterbodies. Their associated artificial habitats can support various aquatic taxa, including freshwater mussels, one of the most threatened animal groups worldwide. An endemic threatened species of freshwater mussel, Westralunio carteri has been sporadically observed in artificial habitats across south-western Australia. However, the viability of these populations remains understudied. Aims: This study aimed to compare the abundance and demographic structure of W. carteri across artificial and natural habitats to determine how artificial habitats may support viable populations of W. carteri. Methods: Data from twelve habitats, consisting of six artificial and six natural, were analysed to determine density and demographic structure. Conclusions: Four of the six artificial habitats supported large populations with varied demography and evidence of recruitment, while some habitats, both artificial and natural, showed impaired, non-recruiting populations at risk of extirpation. Mussel demographics differed between artificial and natural habitats overall, with a broader size range observed in populations from natural habitats (8.0 – 92.0 mm) than from artificial habitats (23.1 – 84.7 mm). Implications: This study provides evidence that W. carteri can successfully colonise and persist in artificial habitats, particularly when conditions are representative of analogous natural refuges. Artificial habitats likely provide a supplementary tool for the conservation of mussel populations experiencing habitat degradation and loss. This contains two data sets, "data_novel_refuge" provides distributional and abundance data for W. carteri across all habitats surveyed, along with metadata on shading, substrate and depth at each quadrat. "data_size" provides the Lmax measurements of W. carteri specimens collected during these surveys, with all measurements in mm. DOI:10.1071/PC25073
DOI: 10.17632/rtddhb9ng6.1
title: Artificial habitats provide refuge for a threatened freshwater mussel in south-west Australia: DATA

description: Context: Worldwide modifications of river systems, closely tied to human development, has led to a proliferation of artificial waterbodies. Their associated artificial habitats can support various aquatic taxa, including freshwater mussels, one of the most threatened animal groups worldwide. An endemic threatened species of freshwater mussel, Westralunio carteri has been sporadically observed in artificial habitats across south-western Australia. However, the viability of these populations remains understudied. Aims: This study aimed to compare the abundance and demographic structure of W. carteri across artificial and natural habitats to determine how artificial habitats may support viable populations of W. carteri. Methods: Data from twelve habitats, consisting of six artificial and six natural, were analysed to determine density and demographic structure. Conclusions: Four of the six artificial habitats supported large populations with varied demography and evidence of recruitment, while some habitats, both artificial and natural, showed impaired, non-recruiting populations at risk of extirpation. Mussel demographics differed between artificial and natural habitats overall, with a broader size range observed in populations from natural habitats (8.0 – 92.0 mm) than from artificial habitats (23.1 – 84.7 mm). Implications: This study provides evidence that W. carteri can successfully colonise and persist in artificial habitats, particularly when conditions are representative of analogous natural refuges. Artificial habitats likely provide a supplementary tool for the conservation of mussel populations experiencing habitat degradation and loss. This contains two data sets, "data_novel_refuge" provides distributional and abundance data for W. carteri across all habitats surveyed, along with metadata on shading, substrate and depth at each quadrat. "data_size" provides the Lmax measurements of W. carteri specimens collected during these surveys, with all measurements in mm. DOI:10.1071/PC25073