cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28759625.v1
title: <b>بررسی اعتبار مجلات علمی پژوهشی ایران برای پیشبرد اهداف علمی کشور</b><b>Evaluating the Credibility of Iranian Scientific-Research Journals for Advancing the Nation's Scientific Objectives</b>

description: The advancement of national science and technology relies heavily on the effective dissemination of research findings. Scientific-research journals serve as fundamental platforms for validating, organizing, and promoting knowledge. This study investigates the credibility of Iranian scientific-research journals with a focus on their role in achieving the country's scientific development goals. Employing a qualitative methodology, the study analyzes indicators such as international indexing, peer-review policies, impact factor, and citation rates. The findings reveal that despite some improvements, issues like weak peer review systems, lack of transparency, and insufficient alignment with international standards hinder the full scientific effectiveness of these journals. The paper concludes with strategic recommendations to enhance the global visibility and domestic impact of Iranian academic publishing.رشد علمی کشورها در دهه‌های اخیر بیش از پیش به نشر دستاوردهای علمی وابسته شده است. مجلات علمی-پژوهشی نقش کلیدی در ساماندهی، اعتباربخشی و ترویج دانش دارند. این پژوهش به بررسی اعتبار مجلات علمی پژوهشی ایران با تأکید بر نقش آنها در تحقق اهداف علمی کشور می‌پردازد. روش تحقیق کیفی بوده و از تحلیل محتوا و بررسی شاخص‌های نمایه‌سازی، ضریب تأثیر، سیاست‌های داوری و میزان ارجاع‌دهی استفاده شده است. نتایج نشان می‌دهد که با وجود پیشرفت‌هایی در برخی حوزه‌ها، همچنان چالش‌هایی نظیر ضعف در نظام داوری، کمبود شفافیت در ارزیابی‌ها، و فاصله از استانداردهای بین‌المللی، مانعی در مسیر اثربخشی کامل این مجلات در سطح ملی و بین‌المللی به شمار می‌روند.
DOI: 10.6084/m9.figshare.7419368.v1
title: Volume equations for Khaya ivorensis A. Chev. plantations in Brazil

description: Abstract African mahogany (Khaya spp.) plantations are in expansion in Brazil and in the world. This fact justifies the need for studies related to its growth and yield. This paper aimed to evaluate the performance of single-entry and double-entry models for estimating merchantable and total volume for Khaya ivorensis plantations before the first thinning (7 years) and expected final cut (15 years). Volume data was from 100 and 46 trees in Minas Gerais and Pará states, respectively, by using an electronic dendrometer (Criterion RD 1000). Observed volumes were calculated by Smalian’s formula. To validate the optical dendrometer, 10 trees were felled and had their volume measured, and compared with the volumes measured indirectly. The results showed that observed and estimated volumes were statistically equal, and that double-entry models were more precise than single-entry models. Schumacher and Hall model was the best equation to estimate merchantable volume for first thinning and for final cut in Minas Gerais stands. Spurr logarithmized model was the best equation to estimate total volume for first thinning and Spurr model for final cut in Pará stands. All chosen equations can be used to quantify merchantable and total volumes of Khaya ivorensis grown under similar conditions.
DOI: 10.17045/sthlmuni.28616144.v1
title: Literature search results for scoping review of measuring instruments of university student study environment

description: The definitive search in electronic databases was performed on 20 January 2024, without time span limitations, yielding 102 results from APA_Psychinfo, 95 results from the Education Database, and 4 results from the Social Sciences Database published between 1976 and 2023. One article was found in all three databases, and 39 articles were found in both the APA_Psychinfo database and the Education base. The original search results from the respective databases are available here as supplementary material (Excelfile Dataset).
DOI: 10.17632/9fzf5kk6px
title: Characterization of zein-based materials : Rheology -APPENDIX A1 (Fig. S1)-   and   X-ray Tomography -APPENDIX A2 (Fig. S2)-

description: Characterization of zein-based materials:

- Evolution of the viscoelastic properties of zein-based materials in the molten state during successive frequency sweeps carried out in a plate-plate oscillatory rheometer at 130 °C  - APPENDIX A1 (Fig. S1) -

- Potential effect of dilation, or thermal expansion, on sintering. No dilation is observed during the monitoring of the volume of a sole filament placed at high temperature and followed-up by dynamic X-ray microtomography at Synchrotron SOLEIL on the ANATOMIX beamline. Then, in the case of the sintering of two juxtaposed filaments placed at these same temperatures, no expansion (potential bubbles), nor thermal dilation, may favor the effect of surface tension as the driving force of the sintering. Indeed, with a very low increase of the total volume of each filament (less than 3% of the initial volume at the maximum measured level), the effect of the expansion is negligible, whatever the temperature  -APPENDIX A2 (Fig. S2)-
DOI: 10.6084/m9.figshare.26638954.v1
title: Supplementary Material for: Associations of Diet and Lifestyle with Mortality and Stroke: The China Cardiometabolic Disease and Cancer Cohort (4C) Study

description: Objective
This study aims to examine the individual and combined associations between dietary habits and lifestyle factors concerning all-cause mortality and stroke in Chinese adults.
Method
We conducted a nationwide, multi-center, prospective cohort study involving 10,008 participants, gathering baseline data on lifestyle, metabolic status, dietary habits, and living behaviors. Subsequently, a 10-year follow-up was performed, resulting in the inclusion of 7,612 participants in this study. We employed Spearman correlation analysis, restricted cubic spline regression, and cox regression analysis to evaluate the connections between outcome events, dietary habits, and lifestyle.
Result
For each additional serving of pulses consumed per week, there was a slight decrease in the risk of all-cause mortality (HR: 0.91, 95% CI: 0.83-0.99). The hazard ratios for stroke were 2.24(1.48,3.37) for current smokers, in comparison to individuals who had never smoked. Appropriate intake of specific dietary factors and certain lifestyle habits were associated with reduced stroke: fruit drinks at 0.51(0.34,0.87), and animal viscera at 0.58(0.32,1.04). Weekly consumption of at least 21 servings of vegetables (0.72, 0.53-0.98), 0-1 serving of fried food (0.58, 0.38-0.90), and at least 1 serving of carbonated beverages (0.51, 0.28-0.92) was associated with a reduced risk of stroke.
Conclusion
Smoking was found to be linked to an increased risk of stroke. A higher intake of fruit drinks and animal viscera was associated with a reduced risk of stroke. In contrast, a higher intake of beans was associated with a decreased risk of overall mortality. Consuming an appropriate amount of vegetables, fried foods, and carbonated drinks was found to potentially lower the risk of stroke. Collectively, these findings underscore the importance of developing tailored dietary interventions conducive to the Chinese populace's health.
DOI: 10.6084/m9.figshare.5132647.v8
title: Brain-to-Brain interaction at a distance: a global or differential relationship?

description: EEG, GW6 max correlation individual data related to the paper "<b>Brain-to-Brain interaction at a distance: a global or differential relationship?"</b><b><br></b><b>MatLab syntax (MachineLearningSyntax) and Extended data related to the paper "EEG correlation at a distance: a re-analysis of two studies using a machine learning approach"<br></b>
DOI: 10.17632/tzbffkpr9n
title: Metagenomic data of Microbiota in Mangrove Soil from Lukut River, Malaysia

description: Metagenomics sequencing 
The assembled genome contained 6736 shared genes between soil 1 and soil 3, 203,682 shared genes between soil 1 and soil 2, and 66,383 shared genes between soil 2 and soil 3 (Figure 1). 

Comparative analysis of metabolic pathways of bacterial diversity
Function annotation based on the KEGG, as shown in Figure 2, reveals that most of the core genes found in mangrove soils are involved in metabolic pathways. The highest genes are involved in carbohydrate metabolism and followed by amino acid metabolism. In addition, the functional annotation based on eggNOG shows the genome isolated from the soils of mangrove trees’ rhizosphere mostly contains genes that are associated with energy production and conversion, amino acid transport, metabolism, replication, recombination and repair, as well as carbohydrate transport and metabolism pathways (Figure 3). In this study, the functional annotation based on the CAZy reveals six CAZy main functions as follows: Glycoside Hydrolase (GH), Glycosyl Transferase (GT), Polysaccharide Lyase (PL), Carbohydrate Esterases (CE), Auxiliary Activities (AA) and Carbohydrate-Binding Modules (CBM) were found in collected mangrove soils (Figure 4). 

Metabolic pathways show the signature of bacteria and their function 
Carbon fixation was found to be the most prevalent pathway, followed by methane, nitrogen, sulfur, atrazine, and dioxin degradation pathways (Figure 5). Further analysis identified Chloroflexi, Gaiellales bacterium and Acidobacteria as the major microbial taxa affiliated with the carbon fixation pathway. Methanotrophic bacteria, including Methyloceanibacter caenitepidi, M. superfactus, and M. marginalis were also detected (Figure 6). Additionally, several nitrogen-fixing bacteria, such as Chloroflexi bacterium, Acidobacteria bacterium, Actinobacteria bacterium, Frankia sp., proteobacteria bacterium, Betaproteobacteria bacterium, Anaerolineae bacterium, Bradyrhizobium liaoningense, Bradyrhizobium sp., Methyloceanibacter caenitepidi, Methyloceanibacter marginalis, Methyloceanibacter superfactus, Pseudolabrys taiwanensis, Bradyrhizobium manausense, Solirubrobacter sp., Solirubrobacter soli, and Phycicoccus jejuensis were identified (Figure 6).

Furthermore, we also found the presence of sulfate-reducing bacteria (SRB), such as Thiohalobacter thiocyanaticus, Acidobacteria bacterium, Woeseia oceani, Desulfobacteraceae bacterium, Desulfobacterales bacterium, Mycolicibacterium rhodesiae, Gaiellales bacterium, Deltaproteobacteria bacterium and Myxococcales bacterium in the collected soil samples (Figure 6). The heatmap in Figure 6 also shows the presence of various bacterial species classified in the Actinobacteria phylum, including Phycicoccus jejuensis, Solirubrobacterales bacterium, Mycolicibacterium rhodesiae, M. mariokaense, Solirubrobacter sp. and S. soli in the collected soils.
DOI: 10.6084/m9.figshare.12200006.v1
title: RadAtlas 1.0: a knowledgebase focusing on radiation-associated genes

description: <b>Purpose:</b> Ionizing radiation has very complex biological effects, such as inducing damage to DNA and proteins, ionizing water molecules to produce toxic free radicals, and triggering genetic and somatic effects. Understanding the biomolecular response mechanism of radiation is very important for the prevention and treatment of radiation diseases. However, function information of these radiation-associated genes is hidden in numbers of scientific papers and databases, making it difficult to understand the response mechanism of ionizing radiation. <b>Materials and methods:</b> We collected radiation-associated genes by literature and database mining. Literature and database mining was performed on the basis of biomedical literature from PubMed and gene expression datasets from GEO respectively. <b>Results:</b> We built an ionizing radiation related knowledgebase RadAtlas 1.0 (http://biokb.ncpsb.org/radatlas), which contains 598 radiation-associated genes compiled from literature mining, and 611 potential radiation-associated genes collected from gene expression datasets by differential gene expression analysis. We also provide a user-friendly web interface that offers multiple search methods. <b>Conclusions:</b> RadAtlas collected a large amount of information about genes, biological processes, and pathways related to ionizing radiation. It is the first attempt to provide a comprehensive catalog of radiation-associated genes with literature evidence and potential radiation-associated genes with differential expression evidence. We believe that RadAtlas would be a helpful tool to understand the response mechanism to ionizing radiation.
DOI: 10.17632/fhww2x8yy6
title: Diagnosis of gamma/delta mycosis fungoides requires longitudinal clinical observation

description: ST1: Abbreviations: mo, months; HTN, hypertension; C, Caucasian; LE, lower extremity; UE, upper extremity; CR, complete remission; PR, partial response; AWD, alive with disease; DOD, died of disease; IFN, Interferon-α-2a; Bex, bexarotene; Gem, gemcitabine; PUVA, psoralen (P) and ultraviolet A (UVA); NB-UVB, narrow band-ultraviolet B; BMT, bone marrow transplant. TNMB classifications and disease stages were based on the 2007 staging guidelines defined by the International Society of Cutaneous Lymphomas and the European Organisation for Research and Treatment of Cancer Cutaneous Lymphoma Task Force. ST2: lymphoid cells as positive if &gt; 50% of cells showed staining, focally positive if 10-50% (+/-) of cells showed staining, and negative if &lt;10% of cells showed staining. For CD2, CD5, and CD7, results were defined as preserved expression if &gt;50% of cells were positive, and partial/subtotal loss of expression if &lt;50% (+/-) of cells were positive. Molecular pathology results of T-cell receptor (TCR) gene rearrangement, including TCRγ and TCR𝛽 were a part of the routine workup and were retrieved from the medical records. The first row of Case 4 refers to the plaques and the second row to the tumours. EBER, EBV-encoded RNA; GB, granzyme B; TIA-1, T-cell intracellular antigen-1; TCR, T-cell receptor. SF1: A-B) Case 1 presenting with a ~ 5 cm confluent reddish-brown annular patch with overlying scale on the right lower abdomen and right flank. C-F) Case 2 initial cutaneous lesions exhibiting variable sized reddish brown annular patches and plaques with overlying scale to the trunk and left axillary region. F) Case 2 demonstrating stage progression with a dark red multi-lobed tumours with overlying scale involving the right nasal sidewall. G-H) Case 3 initially demonstrating erythematous scaly patches and plaques symmetrically on the trunk and proximal lower extremities and. I-J) Case 4 initially manifesting erythematous scaly patches and plaques on the trunk and upper extremities (E), and subsequently developing ulcerating tumours on the right plantar SF2: A) H&E reveals an atypical lymphoid infiltrate within the epidermis and reactive superficial dermal infiltrate. The epidermotropic lymphoma cells are small-to-medium size with perinuclear halos and hyperchromatic nuclei. Intraepidermal T-cells are negative for CD4 (B), CD8 (C), and Beta-F1 (D). Reactive superficial dermal infiltrate stains positive for Beta-F1 and CD4. Epidermotropic lymphoid cells strongly express TCR-δ (E) and cytotoxic marker TIA (F). G) H&E, atypical lymphoid infiltrate indistinguishable from that or early-stage MF and 2019 biopsy. A reactive superficial dermal infiltrate is noted. H) Epidermotropic lymphoid cells are positive for T-cell marker, CD3, show scant CD4 expression (I) and negative CD8 expression (J).
DOI: 10.6084/m9.figshare.28072337.v1
title: MDA_MB_231_Dish1_750nm_25mW_4FOV_20Avg3001_aug2020__ImageStruct.mat

description: NAD(P)H 2P FLIM data.
DOI: 10.11583/dtu.14188487.v1
title: Data for "Trapped upper hybrid waves as eigenmodes of non-monotonic background density profiles"

description: Data for the figures of the article "Trapped upper hybrid waves as eigenmodes of non-monotonic background density profiles" published in Plasma Physics and Controlled Fusion, DOI https://doi.org/10.1088/1361-6587/abf85a. The data is saved in Numpy's .npz-format. See the readme.txt-file.
DOI: 10.6084/m9.figshare.5126422.v1
title: Supplementary Material for: High Frequency of <b><i>DUOX2</i></b> Mutations in Transient or Permanent Congenital Hypothyroidism with Eutopic Thyroid Glands

description: <b><i>Background/Aims:</i></b> This study aimed to clarify the frequency, phenotypes, and molecular spectrum of <i>DUOX2</i>,<i> TPO</i>, <i>TSHR, </i>and <i>TG</i> mutations in patients with congenital hypothyroidism (CH) with enlarged or normal-sized eutopic thyroid glands. <b><i>Methods:</i></b> The study cohort included 43 subjects from 41 unrelated families who had CH with eutopic thyroid glands. Mutation analyses of <i>DUOX2</i>,<i> TPO</i>, and<i> TSHR</i> were performed. The functional capacities of novel missense variants of <i>DUOX2</i> were verified by measuring H<sub>2</sub>O<sub>2</sub> generation in vitro. <b><i>Results:</i></b> Of the 43 subjects, 23 (53.5%) had sequence variants in at least one gene. Twelve different <i>DUOX2</i> variants, including seven novel variants, were identified in 20 subjects. A functional analysis of the <i>DUOX2</i> variants revealed that most variants, other than p.G206V and p.H678R, caused a significant reduction in H<sub>2</sub>O<sub>2</sub> generation. Therefore, 15 subjects harbored functionally deleterious <i>DUOX2</i> variants. Of these, 5 subjects had transient CH, and 10 were found to have permanent CH. Sequence variants in <i>TSHR</i> were identified in 5 subjects. One of the 43 subjects (2.3%) had sequence variants in two different genes. <b><i>Conclusions:</i></b><i>DUOX2</i> variants are a relatively common cause of CH with normal-sized or enlarged eutopic thyroid glands. Variable phenotypes were associated with partial loss of the functional activity of <i>DUOX2</i> variants.
DOI: 10.6084/m9.figshare.5128606.v1
title: Supplementary Material for: Repeated Intravenous Treatment with Recombinant Tissue-Type Plasminogen Activator in Patients with Acute Ischemic Stroke

description: <b><i>Objective:</i></b> Increased use of systemic thrombolysis, demographic changes, and higher chances of surviving first-ever strokes all lead to an increasing number of patients with recurrent stroke. However, data on repeated thrombolysis are limited. Here, we report on the safety and clinical effects of repeated intravenous recombinant tissue-type plasminogen activator (rt-PA) treatment in a large consecutive cohort of stroke patients. <b><i>Methods:</i></b> We identified all stroke patients who received repeated thrombolysis. We determined safety and 3-month clinical outcome after the first and second thrombolysis. All patients received follow-up brain imaging. Good clinical outcome was defined as a modified Rankin Scale of 0-2 or recovery to the prestroke status. <b><i>Results:</i></b> In total, 24 patients were included (i.e. 1.5% of all stroke patients treated with rt-PA at our center who survived the first treatment; male 45.8%; median age at first event: 74.5 years). No allergic or anaphylactic reactions were recorded after the first time of treatment, but oral angioedema developed once during the second treatment. No symptomatic intracerebral hemorrhage was observed. Clinical outcome was good in 75.0% after the first, but in only 41.7% after the second treatment (p = 0.021). <b><i>Conclusions:</i></b> Repeated thrombolysis was not associated with a higher rate of complications. However, the clinical outcome appears to be less satisfactory than after the first treatment.
DOI: 10.17632/5hzcxdb4dp
title: Callose-regulated symplastic communication coordinates symbiotic root nodule development

description: Raw and analyzed data presented in the manuscript of Gaudioso-Pedraza et al. 2018 Current Biology.
DOI: 10.17632/cfb342vzvf
title: Data for: An Anthrone-Based Kv7.2/7.3 Channel Blocker with Improved Properties for the Investigation of Psychiatric and Neurodegenera-tive Disorders

description: Assay protocols; synthetic protocols; characterization data for compounds
DOI: 10.17632/j54r86djbb
title: Kolvansh Newletter (editing in process) by Ganpat Rai Bheel

description: Kolvansh Newsletter was the collective project of SCFP and Sindh Kolhi Itehad. Only a few newsletters could be published before it went into dormancy. These files are based on the digital editorial processing of it made and written by Ganpat Rai Bheel. The data was shared by Ganpat Rai Bheel for research on Dalit activism in Sinh.
DOI: 10.6084/m9.figshare.19499546.v1
title: patches and local annotations, slide 058, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.27099142.v1
title: Supplementary Material for: Off-label Use of Mycophenolate Mofetil in Immunoglobulin A Nephropathy: A Systematic Review and Meta-analysis

description: Introduction: Mycophenolate mofetil (MMF) is widely used off-label in patients with immunoglobulin A nephropathy (IgAN), although the literature does not consistently agree on its efficacy and safety. 
Methods: We systematically searched PubMed, Embase, CENTRAL, CNKI, VIP, Wanfang Data, and SinoMed from their inception to August 2023. We included randomized controlled trials that enrolled patients of IgAN who received MMF treatment and compared effects with placebo or as an add-on therapy to usual care. Literature screening, risk of bias assessment, and data extraction were independently conducted in duplicate. Fixed-effects or random-effects meta-analyses were performed for pooling data where eligible. The primary outcomes were the composite kidney outcomes of major adverse kidney events (MAKDE) defined as doubling of serum creatinine, end-stage renal disease (ESRD), or death from a kidney disease-related or cardiovascular cause.
Results: Of 13 studies identified, 918 participants (463 [50.4%] treated with MMF) with IgAN were included in the analysis. MMF treatment in IgAN was associated with decreasing the occurrence of MAKDE (RR, 0.32; 95%CI, 0.13 to 0.77), reducing proteinuria (RR, 1.41; 95%CI, 1.22 to 1.64), and lessening the probability of doubling blood creatinine (RR, 0.32, 95% CI, 0.14 to 0.72). No significant differences were detected in the incidence of ESRD (RR: 0.87, 95% CI: 0.38 to 2.03), or progression of chronic kidney disease (RR, 1.01; 95%CI, 0.22 to 4.57). Patients receiving MMF had a higher risk of infection (RR, 2.20; 95%CI, 1.21 to 4.00). 
Conclusion: MMF administration in IgAN indicates promising in decreasing the occurrence of MAKDE, reducing proteinuria level, and lessening the probability of doubling blood creatinine, but also comes with the risk of infection. These findings tend to be introduced to non-Caucasian population. The long-term favorable effects that MMF improved kidney outcomes still needs need further cross-regional and cross-ethnical verification.
DOI: 10.17632/6xjm4mkhw8
title: Data for Publication

description: This dataset offers a comprehensive analysis of the water quality of the River Jhelum, encompassing Water Quality Index (WQI) values that reveal significant spatial variations across different sections of the river. Detailed statistical analyses of water samples from upstream, midstream, and downstream sections are provided, offering insights into the water quality dynamics. The dataset also includes eigenvalues and detailed descriptions of the components extracted from the correlation matrix, facilitating a deeper understanding of the underlying factors influencing water quality. Additionally, a three-dimensional biplot illustrates the relationships between the first three principal components and the highly correlated variables, supported by hierarchical clustering using Ward's Linkage and Euclidean Distance metrics, which further elucidate the complex interactions within the water quality data.
DOI: 10.17632/kyhzkxs4w2
title: Practicable earthquake prediction in China

description: This data set is an appendix for the article "Practicable Earthquake Prediction in China"