cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p9wczw5v
title: Brown Treesnake Mortality Habitat Management Unit Guam 2019

description: The dataset contains 16 columns of data collected on invasive Brown Treesnakes (Boiga irregularis) at a study site known as the Habitat Management Unit (HMU) in northern Guam. Snakes were fitted with radio-transmitters and teams of 2-4 biologist listened for signals from transmitters every seven days to determine if snakes were alive or dead. Survival data was then modeled in Program MARK to assess the effect of aerially applied toxic baits on snake mortality, including the effect of snake size covariates. In addition, this dataset contains snake capture information from reference sites on Guam that was used to demonstrate that our sample was representative of the size distribution in limestone forest habitat on Guam.
DOI: 10.5066/p9x1akvj
title: Brown Treesnake mating and reproductive success on Guam, 2004-2018

description: The mating and reproductive ecology of the invasive Brown Treesnake (Boiga irregularis) were generated by reconstructing a multigenerational genomic pedigree based on 654 single nucleotide polymorphisms for a geographically-closed population established in 2004 on Guam (N=426). The pedigree allowed annual estimates of individual mating and reproductive success to be inferred for snakes in the study population over a 14-year period. These data are then merged with morphological data on each snake.
DOI: 10.5066/p9xbocvv
title: North American Grid-Based Offshore Sampling Frames

description: This sampling frame is a set of grid-based, finite-area frames spanning the offshore areas surrounding Canada, the United States, and Mexico, and is intended for use with the North American Bat Monitoring Program (NABat). NABat is a continental collaboration including state and provincial, federal, and local agencies intended to standardize the collection and storage of bat data. Alaskan and Canadian waters are combined into a single grid. There are 5 grids in total: Alaska/Canada Offshore grid, Continental United States Offshore grid, Mexico Offshore grid, Hawaii Offshore Grid, and Caribbean Offshore grid. Grids boundaries are based on World Exclusive Economic Zone oceanic political boundaries and extend into the shoreline 30 kilometers.
DOI: 10.5066/p9xcc65w
title: Presence of erosional features and cover of grasses, forbs, and bare ground on fields enrolled in grassland, wetland, and wildlife practices of the Conservation Reserve Program in the central and western United States from 2016 to 2018

description: Data included in this data set are from in-field and edge-of-field surveys that recorded the presence of erosional features and cover of vegetation and bare ground on 1786 Conservation Reserve Program fields across three types of conservation practices (grassland, wetland, and wildlife). Field sampling data were recorded across six US Department of Agriculture Farm Production Regions (Corn belt, Lake states, Mountain, Northern plains, Pacific, Southern plains) from 2016 to 2018. The study area encompassed all or part of 14 states: Washington, Oregon, Idaho, Montana, North Dakota, South Dakota, Minnesota, Iowa, Missouri, Colorado, Nebraska, Kansas, Oklahoma, and Texas. These data constitute the first national level assessment of CRP establishment across regions and practice types in three decades. Complete methods and other additional information are provided in the journal article associated with this data release (Vandever and others, 2021).
DOI: 10.5066/p9xv8gh7
title: Predicted (1989-2015) and forecasted (2015-2114) estimates for rate of change and recovery of sagebrush (Artemisia spp.) following energy development in southwestern Wyoming, USA (ver. 2.0, January 2021)

description: In 'Predicted (1989-2015) and forecasted (2015-2114) rate of change and recovery of sagebrush (Artemisia spp.) following energy development in southwestern Wyoming, USA (ver. 2.0, January 2021)', we provide spatially- and temporally-explicit maps of predictions for the rate of change and time to recovery and percent recovery of sagebrush cover after 100 years (Monroe et al. 2020). The rasters beginning with "sage.rate" depict the predicted annual rate of change in sagebrush cover for each timestamp interval, across the Wyoming Landscape Conservation Initiative area (WLCI) in southwestern Wyoming, USA (1989-2015). The files 'time_to_recov_v2.0.tif' and 'perc_recov_v2.0.tif' are rasters for predicted time to recovery and percent recovery after 100 years, respectively, following energy development across the WLCI area. Literature cited: Monroe, A. P., C. L. Aldridge, M. S. O'DOnnell, D. J. Manier, C. G. Homer, and P. J. Anderson. 2020. Using remote sensing products to predict recovery of vegetation across space and time following energy development. Ecological Indicators 110:105872.
DOI: 10.5281/zenodo.7330442
title: Data and code for "Hotspots and drivers of compound marine heatwave and low net primary production extremes"

description: This repository provides the code and data for the study "Hotspots and drivers of compound marine heatwave and low net primary production extremes". All processed data required to produce the figures in this study are provided. However, not all raw data are provided, because of too large file sizes. For more information, please contact natacha.legrix@unibe.ch.
DOI: 10.5066/p9xx0mdy
title: Feral horse tail tag deployment and retention data at Conger and Frisco Herd Management Areas, Utah, 2016-2020

description: These data show details of time taken to fit tail tags on horses at Herd Management Areas in Utah and Nevada. We provide the time of day that individuals entered and exited a squeeze chute and the resulting duration of time they were in the squeeze to have the tag affixed (among other things) at BLM facilities, as well as the sex and age of the individual, and dates that tail tags were deployed and last seen in the tail.
DOI: 10.5066/p9xxeunr
title: Genomic variation in the genus Pimephales: raw sequence data and single-nucleotide polymorphisms

description: The fathead minnow (Pimephales promelas) is a key model of vertebrate toxicity. Standardized tests of toxicity in fathead minnow have been developed to support regulatory science, and much is known about the response of the species to various environmental pollutants. However, there is little data on genetic variation within the species, despite the potential influence of genetic background on toxicological outcomes. Furthermore, the phylogenetic relationships among Pimephales species are not fully established and rates of evolutionary divergence within the species and genus have not been investigated. This study examined patterns of genetic variation across the genome within a single wild population of fathead minnow from the San [...]
DOI: 10.5066/p9wocei6
title: Data on flea control using fipronil grain bait with black-tailed prairie dogs at Badlands National Park, South Dakota, 2020-2021

description: We collected fleas from colonies of black-tailed prairie dogs in Badlands National Park, South Dakota, 2020-2021. Specifically, we tested fipronil grain for flea control on two colonies: Colony A in 2020 and Colony B in 2021. To assess on-host flea numbers (in 2020 and 2021), we anesthetized trapped prairie dogs (and their fleas) with isoflurane in induction chambers for processing. We combed each individual with a fine-tooth comb for 30 seconds to remove and count fleas. We released all animals, after they were recovered from anesthesia, at the location where they were captured. To assess off-host flea numbers (in 2021), we used a plumber&amp;amp;rsquo;s cable to insert a 20- by 20-centimeter flannel-cloth as deep as possible into burrow tunnels. [...]
DOI: 10.5066/p9y99uff
title: Data for forecasting buffelgrass distribution with global distribution data, local data, and physiological information

description: This data bundle contains some of the inputs, all of the processing instructions and all outputs from two VisTrails/SAHM workflows, one creating a global habitat suitability model for buffelgrass and another creating a habitat suitability model for buffelgrass in Saguaro National Park, AZ. The bundle documentation files are: 1) '_archive_bundle_metadata.xml' (this file) which contains FGDC metadata describing the archive bundle. 2) 'modelSelectionCV_MakeAbsPntsFilt100_2.csv' containing the field data used as inputs for the Saguaro National Park model. 3) '_archive_raster_inputs.csv' a list of the raster inputs that were used to generate these model results. These are not included in the archive bundle due to size constraints but are identified in this file as well as the metadata document. 4) '_archive_workflow_Final_model_output.vt' where 'Final_model_output' is the name of the history node for the global model and 'SNP final model' is the name of the history node for the Saguaro National Park model being archived in this bundle. Contains a VisTrails/SAHM workflow document which contains the workflow that was used to create these outputs. 5) '_archive_workflow_Final_model_output.vt' where Final_model_output is the name of the history node being archive in this bundle. Contains a VisTrails/SAHM workflow document which contains the workflow that was used to create these outputs. The remaining data files are the spatial and diagnostic model outputs.
DOI: 10.5066/p9yg45tg
title: In Support of the U.S. Fish and Wildlife Service 3-Bat Species Status Assessment: Winter Colony Count Analysis

description: Through the North American Bat Monitoring Program, Bat Conservation International and U.S Geological Survey (USGS) provided technical and science support to assistance in U.S. Fish and Wildlife Service Species Status Assessment ("SSA") for the northern long-eared bat (Myotis septentrionalis), little brown bat (Myotis lucifugus), and tri-colored bat (Perimyotis subflavus). USGS facilitated the SSA data call providing data archival for repeatable and transparent analyses, provided statistical support to assess the historical, current, an future population status for each of the three species, and developed a demographic projection tool to evaluate future viability of each species under multiple threat scenarios. We assessed population trends from count surveys of wintering colonies at hibernacula for these three bat species. Winter colony counts were downloaded from the database of the North American Bat Monitoring Program (U.S. Geological Survey North American Bat Monitoring Program. Accessed 2020-12-01. NABat Request Number 12. Database Version v5.4.0).
DOI: 10.5066/p9ylv6if
title: Temperature data for tegu lizard study in Auburn, Alabama 2017-2018

description: The dataset contains 11 columns of data collected 2017-2018 during a study to assess the ability of invasive Argentine Black and White Tegu (Salvator merianae) to survive in temperate climates of the southeastern USA. Lizards were individually housed in outdoor semi-natural enclosures on the campus of Auburn University in Auburn, Alabama, USA. Database contains tegu identification number, sex, and mean body temperatures as well as environmental temperatures. Temperature data was collected using micro data loggers (iButton Thermochrons) either internally implanted in lizards or placed in lizard enclosures.
DOI: 10.5066/p9ymivfu
title: Burn severity (2002) and field data (2012) from Tolhuaca National Park (Chile)

description: This data was used in the analysis for the article &amp;quot;Burn Severity Controls on Post-fire Araucaria-Nothofagus Regeneration in the Andean Cordillera&amp;quot; by T. Assal, M. Gonzalez and J. Sibold. The aim of the study was to investigate post-fire regeneration patterns of forests on the west slope of the Andes; to evaluate the relationship between remotely sensed burn severity and forest mortality; and to assess controls of burn severity on forest response at local spatio-temporal scales. This dataset reflects the burn severity calculated from Landsat data as part of the analysis.
DOI: 10.5066/p9zbx43t
title: State-and-Transition Simulation Model of Buffelgrass in Saguaro National Park (2014-2044)

description: This is a spatially-explicit state-and-transition simulation model of buffelgrass dynamics in Saguaro National Park. Buffelgrass is an invasive grass spreading in the park. The model represents uninvaded and invaded parts of the desert ecosystem including transition pathways related to management activities and includes a connection to a fire behavior model. The model was built using the ST-Sim software platform linked to the FARSITE fire behavior model. The St-SIM file structure includes three components: 1) Buffelgrass.ssim.input folder that houses the input files used by St-SIM, 2) the Buffelgrass.ssim.output folder which houses the scenario outputs used by St-SIM for visualization and export of data, and 3) Buffelgrass.ssim file which is opened by St-SIM to provide an interface to the model and outputs. This study contains four model scenarios and their associated outputs. This particular database includes model scenarios for the Rincon Mountain District (RMD) of Saguaro National Park with fire.From http://wiki.syncrosim.com/index.php?title=Main_Page: ST-Sim allows users to develop and run spatially-explicit, stochastic state-and-transition simulation models (STSMs) of vegetation change, and is designed to simulate and compare possible vegetation conditions across a landscape over time by considering the interaction between succession, disturbances and management. ST-Sim is the latest in a 20-year lineage of STSM development tools that includes the Vegetation Dynamics Development Tool (VDDT), the Tool for Exploratory Landscape Scenario Analysis (TELSA), and the Path Landscape Model (Path). ST-Sim is intended as an upgrade to Path: in addition to all of the previous Path features, ST-Sim also provides a new option to run raster-based, spatially-explicit simulations.
DOI: 10.5066/p9zmiatf
title: Abundance of wetland-dependent birds at Breeding Bird Survey routes and associated land cover and climate information

description: Estimation and validation data for site by species matrices used in the publication 'Clustering and ensembling approaches to support surrogate-based species management' by H.R. Sofaer et al. 2019 Diversity and Distributions
DOI: 10.5066/p9weue9i
title: Body condition score of horses wearing radio collars, weekly behavior data of treatments and controls, and monthly descriptive data of collar and radio tag effects, 2015-2016, Oklahoma, USA

description: These data are from a study of wild horses and burros wearing radio collars in a captive facility in Oklahoma, USA, for one year. We also evaluated radio transmitter tags (braided into the mane and tails of horses but not burros). We recorded behavior, body condition score, and effects of collars on the necks of horses and burros wearing radio collars and of horses and burros not wearing collars (controls), and recorded any behavioral effects from small radio transmitters on the mane and tails of horses to evaluate effects. These data provide recorded results of behavior, body condition score, and any physical neck effects from radio collars, during weekly and monthly monitoring sessions from February 2015 to March 2016.
DOI: 10.5281/zenodo.7317666
title: Excited-state photoemission band mapping data of the topological insulator Bi2Te2Se

description: The dataset contains excited-state photoemission band mapping data of the topological insulator Bi2Te2Se. <strong>Provenance</strong>; The measurements were carried out at the Fritz Haber Insititute of the Max Planck Society, Germany. The Bi2Te2Se sample was grown at Aarhus University, Denmark. The photoelectrons were detected using SPECS METIS 1000 3D detector with extreme UV pulses centered at 21.7 eV as probe and a pump light pulses centered at 800 nm, which populates part of the excited electronic states (i.e. first conduction band). <strong>Content</strong>: The dataset comes from (1) binning of the single-electron event data and (2) preprocessing through symmetrization and MCLAHE algorithm (https://ieeexplore.ieee.org/document/8895993) for contrast adjustment <strong>Usage</strong>: The dataset is the prerequisite for band structure reconstruction, which may be used for reproducing the results in (https://arxiv.org/abs/2005.10210). For reconstruction, see the source code and examples on GitHub (https://github.com/mpes-kit/fuller).
DOI: 10.5281/zenodo.7314277
title: Dataset of photoemission valence-band mapping and band reconstruction of 2H-WSe2

description: Photoemission band mapping, band structure calculation, and reconstructed band dispersion of layered semiconductor 2<em>H</em>-WSe<sub>2</sub>, a type of 2D transition metal dichalcogenide. <strong>Provenance</strong>: The experimental data were measured using the SPECS METIS 1000 3D detector with extreme UV pulses centered at 21.7 eV as the photoemission light source. The samples were commercially purchased and directly used in the experiment. The calculated data were converted and preprocessed from an existing record (http://dx.doi.org/10.17172/NOMAD/2020.03.28-1), which contains the band structure of 2<em>H</em>-WSe<sub>2</sub> calculated using density functional theory (DFT) at the level of LDA, PBE, PBEsol, and HSE06 exchange-correlation functionals using FHI-aims (version 171221_1). <strong>Content</strong>: The data contain binned and preprocessed photoemission data; Preprocessed DFT calculations used for initializing the band reconstruction; Postprocessed band reconstruction data (including 14 identifiable valence bands). <strong>Usage</strong>: The dataset may be used for reproducing the results in (https://arxiv.org/abs/2005.10210), computational benchmarks or separately for other materials science applications. For reconstruction, see the source code and examples on GitHub (https://github.com/mpes-kit/fuller).
DOI: 10.34740/kaggle/dsv/4530296
title: COVID Vaccination in World (updated daily)
DOI: 10.5519/qd.7mvr9vhs
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (236 records)
DOI: 10.6084/m9.figshare.21250781
title: Prevalence and risk factors for sexual dysfunction in young women following a cancer diagnosis – a population-based study

description: Self-reported sex problems among women diagnosed with reproductive and nonreproductive cancers before the age of 40 are not fully understood. This study aimed to determine sexual dysfunction in young women following a cancer diagnosis in relation to women of the general population. Furthermore, to identify factors associated with sexual dysfunction in women diagnosed with cancer. A population-based cross-sectional study with 694 young women was conducted 1.5 years after being diagnosed with cancer (response rate 72%). Potential participants were identified in national quality registries covering breast and gynecological cancer, lymphoma and brain tumors. The women with cancer were compared to a group of women drawn from the general population (<i>N</i> = 493). Sexual activity and function were assessed with the PROMIS® SexFS. Logistic regression was used to assess differences between women with cancer and the comparison group, and to identify factors associated with sexual dysfunction. The majority of the women with cancer (83%) as well as the women from the comparison group (87%) reported having had sex the last month (partner sex and/or masturbation). More than 60% of the women with cancer (all diagnoses) reported sexual dysfunction in at least one of the measured domains. The women with cancer reported statistically significantly more problems than women of the comparison group across domains such as decreased interest in having sex, and vaginal and vulvar discomfort. Women with gynecological or breast cancer and those receiving more intense treatment were at particular high risk of sexual dysfunction (≥2 domains). Concurrent emotional distress and body image disturbance were associated with more dysfunction. The results underscore the need to routinely assess sexual health in clinical care and follow-up. Based on the results, development of interventions to support women to cope with cancer-related sexual dysfunction is recommended.
DOI: 10.6084/m9.figshare.21250781.v1
title: Prevalence and risk factors for sexual dysfunction in young women following a cancer diagnosis – a population-based study

description: Self-reported sex problems among women diagnosed with reproductive and nonreproductive cancers before the age of 40 are not fully understood. This study aimed to determine sexual dysfunction in young women following a cancer diagnosis in relation to women of the general population. Furthermore, to identify factors associated with sexual dysfunction in women diagnosed with cancer. A population-based cross-sectional study with 694 young women was conducted 1.5 years after being diagnosed with cancer (response rate 72%). Potential participants were identified in national quality registries covering breast and gynecological cancer, lymphoma and brain tumors. The women with cancer were compared to a group of women drawn from the general population (<i>N</i> = 493). Sexual activity and function were assessed with the PROMIS® SexFS. Logistic regression was used to assess differences between women with cancer and the comparison group, and to identify factors associated with sexual dysfunction. The majority of the women with cancer (83%) as well as the women from the comparison group (87%) reported having had sex the last month (partner sex and/or masturbation). More than 60% of the women with cancer (all diagnoses) reported sexual dysfunction in at least one of the measured domains. The women with cancer reported statistically significantly more problems than women of the comparison group across domains such as decreased interest in having sex, and vaginal and vulvar discomfort. Women with gynecological or breast cancer and those receiving more intense treatment were at particular high risk of sexual dysfunction (≥2 domains). Concurrent emotional distress and body image disturbance were associated with more dysfunction. The results underscore the need to routinely assess sexual health in clinical care and follow-up. Based on the results, development of interventions to support women to cope with cancer-related sexual dysfunction is recommended.
DOI: 10.6084/m9.figshare.21431091
title: Circulating tumor DNA is a prognostic biomarker in metastatic melanoma patients treated with chemoimmunotherapy and BRAF inhibitor

description: Detectable circulating tumor DNA (ctDNA) has been associated with worse prognosis in melanoma patients. We studied plasma ctDNA as a prognostic biomarker in 19 patients with metastatic melanoma and a detectable tumor mutation (13 BRAF, 5 NRAS, and 1 KRAS). Patients had received chemotherapy, interferon-alpha, and vemurafenib in a prospective clinical trial. Mutant allele frequency (MAF %) was determined with droplet digital PCR from pretreatment and sequential plasma samples. Higher pretreatment plasma ctDNA levels (MAF ≥3%) and detectable plasma ctDNA levels (MAF &gt;0%) at the time of radiologically confirmed best objective response were associated with poor prognosis even when accounting for other relevant prognostic factors including performance status, tumor mutation, metastasis stage, and lactate dehydrogenase levels in multivariable analysis. Higher pretreatment plasma ctDNA levels and sustained detectable plasma ctDNA levels during treatment indicated poor prognosis in metastatic melanoma patients.