cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.8gp03
title: Data from: Social networks predict gut microbiome composition in wild baboons

description: Social relationships have profound effects on health in humans and other
 primates, but the mechanisms that explain this relationship are not well
 understood. Using shotgun metagenomic data from wild baboons, we found
 that social group membership and social network relationships predicted
 both the taxonomic structure of the gut microbiome and the structure of
 genes encoded by gut microbial species. Rates of interaction directly
 explained variation in the gut microbiome, even after controlling for
 diet, kinship, and shared environments. They therefore strongly implicate
 direct physical contact among social partners in the transmission of gut
 microbial species. We identified 51 socially structured taxa, which were
 significantly enriched for anaerobic and non-spore-forming lifestyles. Our
 results argue that social interactions are an important determinant of gut
 microbiome composition in natural animal populations—a relationship with
 important ramifications for understanding how social relationships
 influence health, as well as the evolution of group living.
description: Sample_informationThis file contains metadata on the samples for this study.Abundances_species_MetaPhlAn2Table listing the relative abundance of microbial species in each sample inferred via MetaPhlAn 2.0.Abundances_species_denovoTable listing species proportional abundance for each sample based on de novo contig assembly.Abundances_enzyme_orthologsTable listing the relative abundance of enzyme gene orthologs in each sample.Mica_1yr_diet_BCdistanceBray-Curtis diet composition dissimilarity matrix for female baboons in Mica's groupViola_1yr_diet_BCdistanceBray-Curtis diet composition dissimilarity matrix for female baboons in Viola's grouppedigreePedigree genetic relationships among all 48 subjects in Mica's and Viola's groupsMica_1yrgroomGrooming network matrix for adult baboons in Mica's groupViola_1yrgroomGrooming network matrix for adult baboons in Viola's groupMica_1yrproximitySpatial proximity matrix for female baboons in Mica's groupViola_1yrproximitySpatial proximity matrix for female baboons in Viola's group
DOI: 10.5061/dryad.87k2p
title: Data from: Reduced genetic diversity and increased reproductive isolation follow population-level loss of larval dispersal in a marine gastropod

description: Population-level consequences of dispersal ability remain poorly
 understood, especially for marine animals in which dispersal is typically
 considered a species-level trait governed by oceanographic transport of
 microscopic larvae. Transitions from dispersive (planktotrophic) to
 non-dispersive, aplanktonic larvae are predicted to reduce connectivity,
 genetic diversity within populations, and the spatial scale at which
 reproductive isolation evolves. However, larval dimorphism within a
 species is rare, precluding population-level tests. We show the sea slug
 Costasiella ocellifera expresses both larval morphs in Florida and the
 Caribbean, regions with divergent mitochondrial lineages. Planktotrophy
 predominated at 11 sites, 10 of which formed a highly connected and
 genetically diverse Caribbean metapopulation. Four populations expressed
 mainly aplanktonic development and had markedly reduced connectivity, and
 lower genetic diversity at one mitochondrial and six nuclear loci.
 Aplanktonic dams showed partial post-zygotic isolation in most
 inter-population crosses, regardless of genetic or geographic distance to
 the sire's source, suggesting outbreeding depression affects
 fragmented populations. Dams from genetically isolated and neighboring
 populations also exhibited pre-mating isolation, consistent with
 reinforcement contingent on historical interaction. By increasing
 self-recruitment and genetic drift, the loss of dispersal may thus
 initiate a feedback loop resulting in the evolution of reproductive
 isolation over small spatial scales in the sea.
description: 01, C_ocellifera master
 COI dataMaster spreadsheet
 showing COI haplotype codes, NCBI accession numbers, sampling frequency
 per location, and specimen identifiers for slugs with a given
 haplotype02,
 Coce_COI_Evolution2015Nexus file of collapsed
 COI haplotypes, with BayesPhylogenies command block03, Arlequin input file,
 Coce_13_popsArlequin input file for
 COI haplotypic data, each sampling site separated04,
 Coce_COI_CaribP_run1BEAST input files for
 generating Bayesian skyline plot of pooled Caribbean planktotrophic
 demes05,
 Coce_LAK_COI_run1BEAST input files for
 generating Bayesian skyline plot of Lake Surprise
 population06,
 Coce_GEI_COI_run1BEAST input files for
 generating Bayesian skyline plot of Geiger Beach
 population07,
 Coce_LSS_COI_run1BEAST input files for
 generating Bayesian skyline plot of Little San Salvador
 population08,
 Coce_Plana_COI_run1BEAST input files for
 generating Bayesian skyline plot of Plana Cays
 population09,
 Coce_msats_14popsArlequin input file for
 microsatellite data, each sampling site separated10,
 Coce_msats.strStructure input file for
 microsatellite data11,
 4runs_Coce_COI_post_burnin.nexTree file combining
 post-burnin output from four Bayesian analyses of COI
 data
DOI: 10.5061/dryad.h6v7g
title: Data from: Macroevolution of specificity in cyanolichens of the genus Peltigera section Polydactylon (Lecanoromycetes, Ascomycota)

description: Patterns of specificity among symbiotic partners are key to a
 comprehensive understanding of the evolution of symbiotic systems.
 Specificity of mutualistic partners, within a widespread monophyletic
 group for which all species are sampled has rarely been explored. Here we
 assess the level of specificity between the cosmopolitan lichen-forming
 fungus (mycobiont) from the genus Peltigera, section Polydactylon, and its
 cyanobacterial partner Nostoc (cyanobiont). The mycobiont and cyanobiont
 phylogenies are inferred from five nuclear loci and the rbcLX region,
 respectively. These sequences were obtained from 206 lichen thalli,
 representing ca. 40 closely related Peltigera species sampled worldwide,
 doubling the number of known species in this group. We found a broad
 spectrum of specificity for both partners ranging from strict specialists
 to generalists. Overall, mycobionts are more specialized than cyanobionts
 by associating mostly with one or a few Nostoc phylogroups, whereas most
 cyanobionts associate frequently with several Peltigera species.
 Specialist mycobionts are older than generalists, supporting the
 hypothesis that specialization of mycobionts to one or few cyanobionts, is
 favored through time in geographic areas where species have been
 established for long periods of time. The relatively recent colonization
 of a new geographic area (Central and South America) by members of section
 Polydactylon is associated with a switch to a generalist pattern of
 association and an increased diversification rate by the fungal partner,
 suggesting that switches to generalism are rare events that are
 advantageous in new environments. We detected higher genetic diversity in
 generalist mycobionts. We also found that Peltigera species specialized on
 a single Nostoc phylogroup have narrower geographical distributions
 compared to generalist species.
description: SupplementaryFigureS1NNSupplementary figure S1.Supplementary Figure S2SupplementaryFigureS2NN.pdfSupplementary Figure S3SupplementaryFigureS3NN.pdfSupplementary Figure S4SupplementaryFigureS4NN.pdfSupplementary Figure S5SupplementaryFigureS5NN.pdfSupplementary TextSupplementary textSupplementaryText_jm+FL.docxSupplementary Table S1SupplementaryTableS1withGBnumbers.docxSupplementary Table S2SupplementaryTableS2.docxSupplementary Table S3SupplementaryTableS3.docxMatrix 1sysbiomatrix1.nexMatrix 2sysbiomatrix2.nexMatrix 3sysbiomatrix_3.nexMatrix 4SysbioMATRIX_4.nexMatrix 5sysbioMatrix_5.nexMatrix 6sysbiomatrix_6.nexMatrix 7Sysbiomatrix7.nex
DOI: 10.5061/dryad.9c7s3
title: Data from: Reduced snow cover increases wintertime nitrous oxide (N2O) emissions from an agricultural soil in the upper U.S. Midwest

description: Throughout most of the northern hemisphere, snow cover decreased in almost
 every winter month from 1967 to 2012. Because snow is an effective
 insulator, snow cover loss has likely enhanced soil freezing and the
 frequency of soil freeze–thaw cycles, which can disrupt soil nitrogen
 dynamics including the production of nitrous oxide (N2O). We used
 replicated automated gas flux chambers deployed in an annual cropping
 system in the upper Midwest US for three winters (December–March,
 2011–2013) to examine the effects of snow removal and additions on N2O
 fluxes. Diminished snow cover resulted in increased N2O emissions each
 year; over the entire experiment, cumulative emissions in plots with snow
 removed were 69% higher than in ambient snow control plots and 95% higher
 than in plots that received additional snow (P &lt; 0.001). Higher
 emissions coincided with a greater number of freeze–thaw cycles that broke
 up soil macroaggregates (250–8000 µm) and significantly increased soil
 inorganic nitrogen pools. We conclude that winters with less snow cover
 can be expected to accelerate N2O fluxes from agricultural soils subject
 to wintertime freezing.
description: dataset_winter_n2oContains data on historical winter weather for Kellogg Biological Station and snowfall record, soil temperature, daily nitrous oxide flux, cumulative nitrous oxide flux, soil inorganic nitrogen and soil aggregates under three snow manipulation treatments over winters 2011-2013.
DOI: 10.5061/dryad.rt7f0b0
title: Data from: Application of benchmark concentration (BMC) analysis on zebrafish data – a new perspective for quantifying toxicity in alternative animal models

description: Over the past decade, the zebrafish is increasingly being used as a model
 to screen for chemical-mediated toxicities including developmental
 toxicity (DT) and neurotoxicity (NT). One of the major challenges is lack
 of harmonization in data analysis approaches, thereby posing difficulty in
 comparing findings across laboratories. To address this, we sought to
 establish a unified data analysis strategy for both DT and NT data, by
 adopting the benchmark concentration (BMC) analysis. There are two
 critical aspects in the BMC analysis: having a toxicity endpoint amenable
 for BMC and selecting a proper benchmark response (BMR) for the endpoint.
 For the former, in addition to the typical endpoints in NT assay (e.g.,
 hyper/hypo- response quantified by distance moved), we also used endpoints
 that assess the differences in movement patterns between chemical-treated
 embryos and control embryos. For the latter, we standardized the selection
 of BMR, which is analogous to minimum activity threshold, based on
 intrinsic response variations in the endpoint. When comparing our BMC
 results with a traditionally used LOAEL method
 (Lowest-Observed-Adverse-Effect Level), we found high active compound
 concordance (100% for DT vs 74% for NT); generally, the BMC was more
 sensitive than LOAEL (# of BMC more sensitive/# of concordant active
 compounds, 43/50 for DT vs 16/26 for NT). Using the BMC with standardized
 toxicity endpoints and an appropriate BMR, we may now have a unified
 data-analysis approach to comparing results across different zebrafish
 datasets, for a better understanding of strengths and challenges when
 using the zebrafish as a screening tool.
description: Zebrafish data
 transferExamples were included
 to demonstrate how to load the data filesbiobide_data_transfer.htmlRaw data from the neurotoxicity assayThe distance moved (mm) per min dataBiobide_behavior_pattern_4db_171218.rdsEndpoint data from developmental toxicity assayThe endpoints include percent_affected, percent_malformed, n_dead per well, n_malformed per wellBiobide_malformed_4db_170905.rdsEndpoint (quantity type) data from the neurotoxicity assayEndpoints include L1_distmoved, D1_distmoved, L2_distmoved, , and D2_distmoved. Responses include both normalized and non-normalized.Biobide_behavior_AUC_4db_171215.rdsEndpoint (similarity type) data from neurotoxicity assayEndpoints include LD_similarity(cosine), LD_correlation(pearson), and LD_correlation(spearman). Responses include normalized and non-normalizedBiobide_behavior_simi_4db_171218.rds
DOI: 10.15468/dl.pmkrxp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((90.05868599999999 25.085408, 89.981156 25.079831, 89.90555500000001 25.063239, 89.833763 25.036044, 89.76756399999999 24.998922, 89.708595 24.952796, 89.65831300000001 24.898812, 89.61795100000001 24.838306, 89.588494 24.772778, 89.570652 24.703847, 89.564847 24.633215, 89.5712 24.562622, 89.58953700000001 24.493804, 89.61938600000001 24.428453, 89.66 24.36817, 89.710369 24.314431, 89.769251 24.268552, 89.835199 24.231653, 89.906597 24.204634, 89.98170399999999 24.188155, 90.05868599999999 24.182616, 90.135668 24.188155, 90.210775 24.204634, 90.282173 24.231653, 90.34812100000001 24.268552, 90.407003 24.314431, 90.45737200000001 24.36817, 90.497986 24.428453, 90.527835 24.493804, 90.546172 24.562622, 90.552525 24.633215, 90.54671999999999 24.703847, 90.52887800000001 24.772778, 90.499421 24.838306, 90.459059 24.898812, 90.408777 24.952796, 90.349808 24.998922, 90.283609 25.036044, 90.211817 25.063239, 90.136216 25.079831, 90.05868599999999 25.085408))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006579-260120142942310/datasets/export for details.
DOI: 10.5281/zenodo.18243341
title: European hail data derived from XGBoost and HAILCAST

description: This dataset provides hail outputs derived from two independent diagnostics:

- a machine-learning model based on XGBoost- a physically based HAILCAST model

The dataset supports the analyses and figures presented in the manuscriptsubmitted to npj Climate and Atmospheric Science:"Divergent European hail projections from machine learning and physically based models under global warming"
DOI: 10.5281/zenodo.18243342
title: European hail data derived from XGBoost and HAILCAST

description: This dataset provides hail outputs derived from two independent diagnostics:

- a machine-learning model based on XGBoost- a physically based HAILCAST model

The dataset supports the analyses and figures presented in the manuscriptsubmitted to npj Climate and Atmospheric Science:"Divergent European hail projections from machine learning and physically based models under global warming"
DOI: 10.1285/i15900932v45s1p0
title: Title page
DOI: 10.15468/dl.2zmbzv
title: Occurrence Download

description: A dataset containing 361 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((0.12644 41.9553,1.92607 41.9553,1.92607 43.51208,0.12644 43.51208,0.12644 41.9553))",
 "TaxonKey is Rosalia alpina"
 ]
}

 The dataset includes 361 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006582-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.52pph8
title: Occurrence Download

description: A dataset containing 2519 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.2.1.1_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Corvus corone",
 "Year 2013-2023"
 ]
}

 The dataset includes 2519 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006581-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1285/i15900932v45s1pi
title: Editorial
DOI: 10.15468/dl.ekqynf
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trithuria austinensis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 23 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006580-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1285/i15900932v45s1p1
title: On some Lusternick–Schnirelmann type invariants

description: In this paper, we show that the invariant $\mathrm{R}_0(X)$, introduced in [15], coincides with $cat_0(X)$ for any rationally elliptic space $X$. Additionally, we define, for any space $X$ over an arbitrary field $\mathbb{K}$, an ${\it Ext-version}$ homotpy invariant $\mathrm{L}_{\mathbb{K}}(X)$ of the Ginsburg invariant $l_{\mathbb{K}}(X)$. Then, we establish the equality between $\mathrm{L}_{0}(X):=\mathrm{L}_{\mathbb{Q}}(X)$ and $l_0(X)$ in the case where $X$ is rationally elliptic.
DOI: 10.15468/dl.tkg47p
title: Occurrence Download

description: A dataset containing 312 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((0.6463 42.22943,1.91771 42.22943,1.91771 43.5313,0.6463 43.5313,0.6463 42.22943))",
 "TaxonKey is Barbastella barbastellus"
 ]
}

 The dataset includes 312 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006583-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1285/i15900932v45s1p13
title: Hermitian metrics on complex non-Kähler manifolds

description: In this survey, we consider various analytic problems related to the geometry of the Chern connection on Hermitian manifolds, such as the existence of metrics with constant Chern-scalar curvature, generalizations of the Kähler-Einstein condition to the non-Kähler setting, and the convergence of the Chern-Ricci ow on compact complex surfaces.
DOI: 10.1285/i15900932v45s1p45
title: Horocycle trajectories on a Hadamard Kähler manifold

description: In this paper weirst give an estimate on angles between initial vectors of geodesics and trajectories of trajectory-harps, which are variations of geodesics associated with trajectories for Kähler magnetic fields. As an application we investigate unbounded trajectories on a Hadamard Kähler manifolds having single limit points.
DOI: 10.17630/e87d5177-ca2b-40c3-9d92-f8a90371564b
title: Design and Synthesis of Multi-resonant Thermally Activated Delayed Fluorescence Materials and Chiral Emitters (thesis data)

description: The attached data files underpin the publication “Design and Synthesis of Multi-resonant Thermally Activated Delayed Fluorescence Materials and Chiral Emitters”. 
Each chapter folder in the open data folder includes three or four sub-folders: Calculations, Characterization, Optoelectronics and Devices. 
The Calculations folder includes the .com or .gjf, .log and .xyz files for investigated compounds. 
The Characterization folder includes NMR (FID and MNova files), HRMS (PDF or PNG) data of the intermediates and NMR (FID and MNova files), HRMS (PDF or PNG), EA (PDF) and HPLC (PDF) data of the compounds. 
The Optoelectronics folder includes two sub-folders: Electrochemistry and Photophysics. The Electrochemistry folder includes the raw data of CV and DPV measurements (.txt). The Photophysics folder includes the raw data (the .txt or excel files from the instrument) of UV-vis absorption spectra in solutions, SSPL, TRPL spectra, PLQY measurements in solutions and films. Other data should be included where relevant, such as ΔEST measurements.
The Devices folder includes the raw data (.txt or excel files) of OLED measurements.
DOI: 10.6084/m9.figshare.31132612
title: Supplementary Figures

description: Supplementary Figures
DOI: 10.6084/m9.figshare.31132612.v1
title: Supplementary Figures

description: Supplementary Figures
DOI: 10.48425/yfnc1gw0
title: Protocol_S_climate_ground_temperature_snow_depth_ground_ice

description: Protocol for ground temperature loggers (iButtons), snow depth, and basal ground ice measurements on the western coast of Svalbard (Brøggerhalvøya, Sarsøyra and Kaffiøyra), as well as in Nordenskiöldland in central Spitsbergen.
DOI: 10.6092/unibo/amsacta/8747
title: INTELLIMAN. WP4. Adaptive shared autonomy. T4_3. Human intent detection for autonomy arbitration. Weakly supervised myocontrol. v0

description: The dataset is related to human–robot interfaces (HRIs) for robotic hand control based on regression of surface electromyography (sEMG) signals without requiring instant-by-instant labeling.
It includes sEMG data acquired from healthy subjects performing different grasping motions (power, tripodal, and ulnar grasps), and is used to compare state-of-the-art unsupervised regression methods—namely Non-Negative Matrix Factorization (NMF) and autoencoders (AE)—with a novel weakly supervised approach based on neural networks trained using the soft-Dynamic Time Warping (soft-DTW) divergence.

The dataset was collected during experimental sessions involving real-time and simulated control of an anthropomorphic robotic hand, enabling simultaneous and proportional grasp control from forearm sEMG signals. The data were produced in the framework of the Horizon Europe IntelliMan project and are presented in the following publication:

R. Meattini, A. Bernardini, G. Palli, and C. Melchiorri,
“Comparison of Weakly Supervised Regression of sEMG Signals With State-of-the-Art Unsupervised Methods for Robot Hand Control: A Pilot Study,”
IFAC PapersOnLine, vol. 59, no. 18, pp. 61–66, 2025. https://doi.org/10.1016/j.ifacol.2025.10.197
DOI: 10.15468/dl.d6ffek
title: Occurrence Download

description: A dataset containing 320 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((0.53607 42.1995,1.66764 42.1995,1.66764 43.47562,0.53607 43.47562,0.53607 42.1995))",
 "TaxonKey is Myotis bechsteinii"
 ]
}

 The dataset includes 320 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006584-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1285/i15900932v45s1p67
title: On solvable complete symplectic Lie algebras

description: In this paper, we are interested in solvable complete Lie algebras, over the field $\K=\R$ or $\mathbb{C}$, which admit a symplectic structure. Specifically, important classes are studied, and a description of complete Lie Algebra with the dimension of nilradical less or equal than six, which supported symplectic structure is given.
DOI: 10.15468/dl.7h42ch
title: Occurrence Download

description: A dataset containing 6021 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Themisto gaudichaudii",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 10",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2014"
 ]
}

 The dataset includes 6021 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006586-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.