cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13614452.v14
title: Extractions of North Atlantic cod and herring, 1520-1790

description: We estimate total landings of two major commercial fish species, North Atlantic cod and Northeast Atlantic herring, c 1520-1790. The fisheries evolved through two phases of Accelerated Marine Extraction in the sixteenth and eighteenth centuries. Total landings more than doubled between 1520 and 1620 from about 220,000 metric tonnes to 460,000 MT. A decline of landings in the second half of the 17th century was likely linked to widespread warfare and climate deterioration. Rapid and sustained growth began again around 1725, and total supplies to the European market peaked in 1788 at more than 1 million MT before the unrest connected with the French Revolution ground many fisheries to a temporary halt. Extractions vastly exceeded previous assessments. The findings shift baseline assumptions about past human impact on marine animals, especially cod.<br><br>
DOI: 10.6084/m9.figshare.17005906.v1
title: ALIGNN models for QM9 dataset

description: ALIGNN models for QM9 datasethttps://github.com/usnistgov/alignn<br>
DOI: 10.6084/m9.figshare.26524321.v1
title: Selection of Pacific oysters using an OsHV-1 resistance marker has no influence on susceptibility to Vibrio aestuarianus - ddRADseq analysis

description: Data files to support stacks_workflow genotyping of Pacific oysters exposed to a <i>Vibrio </i><i>aestuarianus</i> trial, including input files required to run the workflow, as well as output plink files and a VCF file of a single SNP per locus.
DOI: 10.17632/24c58vd88r
title: Data for: Forecasting Peer-to-Peer Platform Default Rate with LSTM Neural Network

description: This study adopts borrower data disclosed by US P2P lending platform Lending Club as data source, ranges from 2008 to 2015, since most of the loans issued in this period have been already paid off. We first calculate the average default rate of the monthly fresh loans as the dependent variable, then shift one to four delayed period of this average default as independent variables.
DOI: 10.17632/2dn3hpbm5m
title: StresSense: Dataset for Stress and Boredom-Displaying Activities

description: This dataset is about the stress and boredom-displaying activities. These activities are collected using smartphone device at the wrist position to demonstrate the applicability of wearable devices in the detection of certain behaviors.
DOI: 10.17632/37686sx627
title: Reports

description: Mangroves are coastal ecosystems that, despite providing several goods and services, are threatened by human activities. Climate change adds pressure to the stability of this ecosystem. For instance, sea-level rise can impact salinity levels to which mangroves are adapted. 
In this study, the possible impact of sea-level rise on the spatial distribution of two dominant species in Cau Mau National Park is analyzed.
DOI: 10.17632/7c2ddgwcgt
title: Proteomic dataset of milk extracellular vesicles from uninfected cattle

description: These datasets contain the identified proteins in milk extracellular vesicles from three uninfected (healthy) cattle by using a comprehensive proteomic analysis nanoLC-MS/MS method.
DOI: 10.17632/9mnvpv2wcb
title: Data from: Evaluating the accuracy and biological biological meaning of visits to RFID-enabled bird feeders using video

description: We have provided the data and code used in the statistical analyses for the Ecology and Evolution journal article titled, "Evaluating the accuracy and biological biological meaning of visits to RFID-enabled bird feeders using video." There are two types of data organized by folder: (1) raw data that can be cleaned using the provided code and (2) cleaned data that is prepared for each model analysis in the provided code. In the "Raw data" folder, there are two data sets: "data_fivespecies" consists of the visits made to the RFID-enabled bird feeders; "data_pit" consists of the visits made to the RFID-enabled bird feeders for the individuals with Passive Integrated Transponder (PIT) tags. We have provided descriptions of each column and the type of data contained for both raw data sets in the README file. In the "Cleaned data" folder, there are three data sets, each corresponding to the model specified in the R code (code_v15).
DOI: 10.6084/m9.figshare.7508324.v1
title: Drivers of the Technology Adoption In Healthcare

description: ABSTRACT This paper proposes a theoretical framework for the study of the diffusion of ICT in management and assistance services in healthcare and empirically verifies its applicability in studying adoption of technology in this area. There was a review of literature in the period 2004-2014. Based on this framework, the researchers verified empirically the applicability of organizational drivers proposed in the prior conditions, through a case study conducted by interviews with 13 managers of a Brazilian public hospital that is adopting a nursing prescription module. Through the content analysis, eight organizational drivers of the technology adoption were confirmed. For future research, it is relevant to verify the applicability of the organizational and individual drivers in the other phases of the framework organized according to Rogers (1983), as well as in the prior conditions, either by new case studies or by developing quantitative research instruments about the management process of technology adoption in organizations.
DOI: 10.6084/m9.figshare.8088473.v2
title: CCA.nc

description: CCA reconstruction NetCDF file.
DOI: 10.25452/figshare.plus.25123538.v1
title: Acute Myeloid Leukemia (AML) and Negative Staging Marrow (NSM) CODEX Images

description: CODEX images of 54-plex panel on AML and NSM samples. Diagnostic and post-therapy samples were profiled across three patients. Negative staging marrow samples were profiled for three patients. The PhenoCycler-Fusion experimental run was performed using Akoya’s Fusion 1.0.6 software according to Akoya’s PhenoImager Fusion User Guide. Images were taken and pre-processed (stitching, registration, background subtraction) with Akoya’s PhenoImager Fusion microscope using default settings.See related materials in Collection at: https://doi.org/10.25452/figshare.plus.c.7174914
DOI: 10.6084/m9.figshare.1344805.v2
title: Effects of Mathematics Anxiety and Mathematical Metacognition on Word Problem Solving in Children with and without Mathematical Learning Difficulties

description: N/A
DOI: 10.6084/m9.figshare.21914964.v2
title: database.xlsx

description: this dataset was use for the paper titled "Response of nitrate leaching to no-tillage is dependent on soil, climate and management factors: a global meta-analysis".
DOI: 10.6084/m9.figshare.25339441.v1
title: Data for the study entitled "A method for inverting denudation from the big global thermochronologic data: Example applications to the Dabie orogen, eastern China"

description: This data set contains 158 temperature histories that were compiled from previous publications (n = 151) [<i>Hacker et al.</i>, 2000; <i>Ratschbacher et al.</i>, 2000; <i>Reiners et al.</i>, 2003; <i>Zhou et al.</i>, 2003; <i>Xu et al.</i>, 2005; <i>Hu et al.</i>, 2006; <i>Ji et al.</i>, 2017; <i>Ding et al.</i>, 2021] and our new study (n = 7).The temperature histories compiled in this work can be divided into the following four categories, based on the corresponding methodologies for data collection and numerical modelling. (1) Most of them were derived from inverse modeling of continuous temperature history from multiple thermochronologic data of individual samples till the present [<i>Zhou et al.</i>, 2003; <i>Xu et al.</i>, 2005; <i>Hu et al.</i>, 2006; <i>Ding et al.</i>, 2021]. (2) Ten histories out of the total, derived from multi-domain diffusion modelling of Ar in K-feldspar, cover temperature and time period of the early exhumation stage, not lasting to the present-day [<i>Hacker et al.</i>, 2000; <i>Ratschbacher et al.</i>, 2000; <i>Wang et al.</i>, 2014; <i>Ji et al.</i>, 2017]. (3) Nearly 50% of temperature paths were reconstructed by joint modelling of multiple samples collected from vertical profiles [<i>Reiners et al.</i>, 2003; <i>Ding et al.</i>, 2021]. (4) A number of temperature histories were restored by plotting the thermochronologic age versus their corresponding closure temperatures [<i>Chen et al.</i>, 1995; <i>Wang and Yang</i>, 1998; <i>Grimmer et al.</i>, 2002].Those cooling histories mostly cover the time between 130-0 Ma, with a few up to 270 Ma. The compilation of the temperature histories shows three phases of relatively rapid cooling during the Cretaceous, early Cenozoic, and Late Miocene-present. Given that all host rocks are Cretaceous or older, the cooling histories have been interpreted as rock exhumation in response to tectonic deformation or denudation [<i>Hacker et al.</i>, 2000; <i>Ratschbacher et al.</i>, 2000; <i>Reiners et al.</i>, 2003; <i>Zhou et al.</i>, 2003; <i>Xu et al.</i>, 2005; <i>Hu et al.</i>, 2006; <i>Ji et al.</i>, 2017; <i>Ding et al.</i>, 2021].
DOI: 10.6084/m9.figshare.28620089.v2
title: Prediction of Cognitive Function via Brain Region Volumes with Applications to Alzheimer’s Disease Based on Space-Factor-Guided Functional Principal Component Analysis

description: Alzheimer’s disease (AD) is a prevalent and irreversible brain disorder and early prediction of cognitive function is vital for detecting the onset. The volumes of brain regions can serve as features for predicting cognitive decline, facilitating early detection and intervention. In order to offer a comprehensive representation of brain tissue changes in AD, we employ volume density curves to investigate the relationship between brain regions and cognitive function. However, analyzing these volume curves is complex due to their highly spatial and intrinsic dependence and piecewise structure. To address these challenges, we propose Space-Factor-Guided Functional Principal Component Analysis (SF-FPCA). This method uses factor processes to extract low-dimensional features for intrinsic correlations among regions of interest (ROIs) and applies Functional Principal Component Analysis (FPCA) to these processes to address temporal dependence. Furthermore, by decomposing the loadings into smooth functions of spatial coordinates and a piecewise constant matrix, we identify regions exhibiting smoothness within each region while discontinuities between these regions. We apply SF-FPCA to analyze data from the Alzheimer’s Disease Neuroimaging Initiative (ADNI). Our results demonstrate that SF-FPCA provides the best fit compared to other methods. In addition, features extracted from volume curves using SF-FPCA enable more accurate prediction of cognitive function compared to scalar volumes alone. Leveraging these extracted features, we identify 36 important ROIs influencing cognitive decline. Our investigation into brain atrophy also reveals distinct mechanisms between the left and right hemispheres, shedding light on the nuanced effects of brain region changes on cognitive decline in AD. Supplementary materials for this article are available online, including a standardized description of the materials available for reproducing the work.
DOI: 10.6084/m9.figshare.3559914.v1
title: Appendix A. Nitrogen-to-phosphorus (N:P) ratios in newly mature leaves, old leaves, stems, and roots for each of the fertilizer treatments.

description: Nitrogen-to-phosphorus (N:P) ratios in newly mature leaves, old leaves, stems, and roots for each of the fertilizer treatments.
DOI: 10.6084/m9.figshare.5802891.v1
title: MIR-1K.rar

description: Dataset
DOI: 10.6084/m9.figshare.7823741.v1
title: Burden of drug-resistant pulmonary tuberculosis in Pakistani children.sav

description: Burden of drug-resistant pulmonary tuberculosis in Pakistani children
DOI: 10.17632/rr7m9h84cr
title: Electrocardiogram changes during initial incremental shuttle walk tests (ISWT) in adults patients commencing cardiac rehabilitation in a single UK centre: a retrospective case note review.

description: The incremental shuttle walk test is a submaximal exercise test used as an assessment of functional capacity in patients prior to cardiac rehabilitation. The safety of the test has not been extensively explored. Simultaneous electrocardiogram measurements during this test would provide important information on both the safety of the test, and adequacy of subsequent cardiac risk stratification. However, it is rarely undertaken in clinical practice. The aim of the study was to investigate the safety of the incremental shuttle walk test by exploring the incidence of electrocardiogram changes during the test, and to report on the possible impact of these findings on cardiac risk stratification.
DOI: 10.25452/figshare.plus.20492757.v1
title: THINGS-data: fMRI Brain Masks

description: Brain masks for the fMRI data. <br> Part of THINGS-data: A multimodal collection of large-scale datasets for investigating object representations in brain and behavior. <br> See related materials in Collection at: https://doi.org/10.25452/figshare.plus.c.6161151
DOI: 10.6084/m9.figshare.14079896.v1
title: Circulating mitochondrial DNA is a pro-inflammatory DAMP in sickle cell disease

description: This dataset contains high-throughput datafiles that are used for the figures in the manuscript. <br><br>The "Data Information.xlsx" file has information of each datafile and the corresponding figure/table in the manuscript.<br>
DOI: 10.6084/m9.figshare.22275169.v3
title: Peruvian BioKusharu Food Database

description: As part of the Peruvian research study called: “ <em>Does food biodiversity protect against malnutrition and favor the resilience to climate change-related events in Amazon Indigenous communities? A protocol for a mixed methods study</em>” (see protocol published here), we aimed to create a food-composition database to analyze the nutritional content of the dietary information collected. We partner with myfood24® company to provide guidelines to complete a friendly online version of the database to calculate the nutritient content of macronutrients and micronutrients relevant to the main study, since we are focused on investigating anaemia, we were more interested in the nutrition content of iron in the food intake. This Peruvian BioKusharu food database is going to be used to analyze the food intake collected with a 24-hour recall tool among six Shawi communities to understand the iron intake in the diet. We called this database <em>BioKusharu</em>, since <em>Kusharu </em>means food in the Shawi indigenous language, and <em>Bio </em>represents the biodiversity in the Peruvian Amazon.
DOI: 10.6084/m9.figshare.27021496.v1
title: Supplementary Material for: Use of preoperative immunotherapy in locally advanced unresectable cutaneous squamous cell carcinoma – a case report

description: Introduction: Cutaneous squamous cell carcinoma (cSCC) is the second most common skin cancer. Surgery is the standard of care with curative intent of localized disease, however, for large head and neck cSCCs it is associated with high morbidity. Cemiplimab, an antibody anti programmed cell death-1 (PD-1) protein, is effective in locally advanced unresectable or metastatic cSCC. A pilot study demonstrated a high rate of pathologic complete response using cemiplimab in the neoadjuvant setting. 
Case Presentation: Here, we report the case of a 84-year-old man with two locally advanced unresectable sSCCs (a nasolabial lesion and a retroauricular lesion) treated with cemiplimab, for whom closer follow-up revealed a complete response of the retroauricular lesion and a partial response of the nasolabial lesion after 4 cycles. Patient will be submitted to nasolabial lesion resection. 
Conclusion:This illustrates the efficacy of the use of cemiplimab as preoperative therapy in advanced unresectable cSCC, facilitating a definitive surgical treatment.
DOI: 10.17632/5s7d352n2r
title: Nanoparticle Diffusion in Gray matter: Numerical Simulation Example

description: This is a comsol case of lactoferrin nanoparticle diffusion in a two-dimensional brain interstitial system model.
DOI: 10.6084/m9.figshare.11400552.v3
title: meta diversity on soil N

description: Meta analysis about diversity on N<br>
DOI: 10.6084/m9.figshare.25440484.v4
title: AxSpA Dataset

description: Correlations between biometrics in AxSpA
DOI: 10.6084/m9.figshare.4007427.v3
title: H2 Partially Stirred Reactor Database

description: A data-set of partially stirred reactor states generated by the pypasr (https://github.com/kyleniemeyer/pypasr) code for the Burke H2 Model (http://onlinelibrary.wiley.com/doi/10.1002/kin.20603/abstract).<br>The data is saved in the numpy .npz format, and is organized as follows:<br>The keys of the .npz file are the original filenames, e.g. pasr_out_0.npy, etc.<br>The files correspond to the following inlet conditions:<br>0, 1, 2: 400, 600, 800 K at 1 atm3, 4, 5: 400, 600, 800 K at 10 atm6, 7, 8: 400, 600, 800 K at 25 atm<br>all with an equivalence ratio of one.<br>The individual file arrays are of size:<br>(1001, 100, 16)<br>The first column corresponds to the PaSR simulation time, the second to the particle number inside the PaSR, and the third column contains the themochemical state vectors, are ordered containing:<br>[time, temperature, pressure, mass fractions]<br><br>This database has been used in several works (See references for more information) for error validation and performance testing.<br><br>
DOI: 10.17632/2cwcz2vx4v
title: Acute responses to a potentiation warm-up protocol on sprint and change of direction in female football players: a randomized controlled study

description: Raw data used for the study "Acute responses to a potentiation warm-up protocol on sprint and change of direction in female football players: a randomized controlled study".
DOI: 10.17632/5n7h4xfz2n
title: Protocol for the IPREVENT Trial

description: Protocol V5.0 15th February 2022
DOI: 10.6084/m9.figshare.12278057.v1
title: Economic use of plants is key to their naturalization success

description: The files include the R scripts and data files for the statistical analyses of van Kleunenen et al. 2020 (Economic use of plants is key to their naturalization success) Nature Communications.<br>The main R script file is 'vanKleunen_etal_2020_Rsyntax_MAIN.R'. It calls the datasets and phylogenetic tree. It also refers to two other R script files.
DOI: 10.6084/m9.figshare.12765767.v1
title: Data --- MLT Dependent Inductive Electric Field

description: Data --- MLT Dependent Inductive Electric Field
DOI: 10.6084/m9.figshare.1627953.v3
title: Sensitivity Analysis for Multiple Comparisons in Matched Observational Studies Through Quadratically Constrained Linear Programming

description: A sensitivity analysis in an observational study assesses the robustness of significant findings to unmeasured confounding. While sensitivity analyses in matched observational studies have been well addressed when there is a single outcome variable, accounting for multiple comparisons through the existing methods yields overly conservative results when there are multiple outcome variables of interest. This stems from the fact that unmeasured confounding cannot affect the probability of assignment to treatment differently depending on the outcome being analyzed. Existing methods allow this to occur by combining the results of individual sensitivity analyses to assess whether at least one hypothesis is significant, which in turn results in an overly pessimistic assessment of a study's sensitivity to unobserved biases. By solving a quadratically constrained linear program, we are able to perform a sensitivity analysis while enforcing that unmeasured confounding must have the same impact on the treatment assignment probabilities across outcomes for each individual in the study. We show that this allows for uniform improvements in the power of a sensitivity analysis not only for testing the overall null of no effect, but also for null hypotheses on <i>specific</i> outcome variables while strongly controlling the familywise error rate. We illustrate our method through an observational study on the effect of smoking on naphthalene exposure. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.27084100.v1
title: <b>Blood DNA methylation of</b><b> </b><b><i>CRF</i></b><b> </b><b>and its association with amygdala volume and mood in Cushing’s syndrome.</b>

description: This dataset contains deidentified patient data supporting the manuscript published in the journal Frontiers in Epigenetics and Epigenomics in 2024. Patient demographic (age, sex), physiological (Cushing's Disease characterization), psychiatric (anxiety and depression scores), and epigenetic (DNA methylation status of CRF promoter) data are included.
DOI: 10.6084/m9.figshare.28129961.v1
title: Supplementary files of article "Adaptive Laboratory Evolution Uncovers Potential Role of a DNA Helicase mutation in Torulaspora delbrueckii Increased Sulphite Resistance"

description: Supplementary files that support the article Adaptive Laboratory Evolution Uncovers Potential Role of a DNA Helicase mutation in <i>Torulaspora delbrueckii</i> Increased Sulphite Resistance
DOI: 10.6084/m9.figshare.14544207.v1
title: Data and code from "Species richness is more important for ecosystem functioning than species turnover along an elevational gradient"

description: This package contains data of 22 ecosystem functions of microorganisms, plants and animals sampled along a 3.7 km elevational gradient across 13 major ecosystem types on Mt. Kilimanjaro, Tanzania.<br>Along with the raw data we provide R code to reproduce the analysis from the paper. For details about how to run the R code please have a look at the README file in the package. For details about the methods (e.g., field sampling or background of particular analyses) we refer to the original publication.
DOI: 10.6084/m9.figshare.28741205.v1
title: Ecological Specialization Emberizoidea

description: Ecological specialization is a key aspect of species adaptation, yet the drivers shaping its geographical distribution remain debated. This study examines ecological specialization in the Emberizoidea superfamily (Aves: Passeriformes), analyzing the effects of colonization time, climatic stability, and competition on diet, foraging, and habitat specialization across global and regional scales. Our findings indicate that globally, temperature stability promotes diet specialization, while time since colonization positively influences habitat specialization but negatively affects foraging specialization. However, at regional scales, distinct patterns emerge. Studying the Neotropics, Nearctics, and Palearctic, we show that ecological specialization is not driven by a single global factor but is shaped by region-specific interactions between evolutionary history, environmental stability, and interspecific competition. Our findings also challenge the assumption that biotic interactions primarily drive specialization in the tropics, suggesting a more complex interplay of factors at different latitudes, at least for Emberizoidea. Understanding these drivers has important implications for biodiversity conservation, as ecological specialization affects species resilience to environmental changes. <br>
DOI: 10.6084/m9.figshare.5362636.v1
title: GRF proposal 2016

description: Proposal for NSF GRFP (successful), 2016.
DOI: 10.17632/84fzhgs86j
title: A fortran program for the calculation of hyperfine structure in the rotational transition of a 2∑ diatomic molecule II. Magnetic and electric quadrupole interaction from both nuclei

description: Title of program: DBLSIG2 Catalogue Id: AAFY_v1_0 Nature of problem Calculation of hyperfine structure (magnetic and electric quadrupole) in the rotational spectrum of open shell doublet sigma ground state diatomic molecules arising from nuclear spin-rotation interaction of both the nuclei by the method of diagonalization of energy Hamiltonian. Versions of this program held in the CPC repository in Mendeley Data AAFY_v1_0; DBLSIG2; 10.1016/0010-4655(86)90021-4 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)