cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4062462
title: TAIR functional annotation data

description: Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org) The contents of the compressed archive include the following files which are described in detail in the included README file. <br> 1.ATH_GO_GOSLIM.txt.gz<br> This document is a tab-delimited file containing GO annotations for Arabidopsis genes annotated by TAIR and TIGR with terms from the Gene Ontology Consortium controlled vocabularies (see www.geneontology.org). This file includes an updated set of literature based annotations and &gt;40,000 electronic annotations based upon matches to INTERPRO domains supplied by Nicola Mulder from SWISS PROT/INTERPRO. Please cite this paper when using TAIR's GO annotations in your research: Berardini, TZ, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, LM, Yoon, J, Doyle, A, Lander, G, Moseyko, N, Yoo, D, Xu, I, Zoeckler, B, Montoya, M, Miller, N, Weems, D, and Rhee, SY (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135(2):1-11. <br> 2.gene_aliases_yyyymmdd.txt(.gz)<br> This file lists alternative names for each gene. <br> 3.Locus_Germplasm_Phenotype_yyyymmdd.txt.gz<br> This file contains links between loci, germplasms, and phenotypes. <br> <br> 4.Locus_Published_yyyymmdd.txt.gz<br> This file contains links between loci and publications. <br> <br> 5.po_temporal_gene_arabidopsis_tair.assoc.gz<br> po_anatomy_gene_arabidopsis_tair.assoc.gz<br> These two files are tab-delimited files. Each contains the <br> set of literature-based annotations of Arabidopsis genes and loci annotated at TAIR to the terms from the Plant Ontology developed by the Plant Ontology Consortium (POC, www.plantontology.org). <br> 6.TAIR10 or ARAPORT11_functional_descriptions_yyyymmdd.txt(.gz)<br> This file contains functional descriptions for gene models included in either the TAIR 10 or as of 20170630 the Araport11 genome release. TAIR10/Araport11 refers to the version of the genome annotation.<br>
description: {"references": ["Berardini, TZ, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, LM, Yoon, J, Doyle, A, Lander, G, Moseyko, N, Yoo, D, Xu, I, Zoeckler, B, Montoya, M, Miller, N, Weems, D, and Rhee, SY (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135(2):1-11. DOI:10.1104/pp.104.040071", "Huala E, Dickerman AW, Garcia-Hernandez M, Weems D, Reiser L, LaFond F, Hanley D, Kiphart D, Zhuang M, Huang W, Mueller LA, Bhattacharyya D, Bhaya D, Sobral BW, Beavis W, Meinke DW, Town CD, Somerville C, Rhee SY. The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. Nucleic Acids Res. 2001 Jan 1;29(1):102-5. PubMed PMID: 11125061; PubMed Central PMCID: PMC29827."]}
DOI: 10.5281/zenodo.4660294
title: TAIR functional annotation data 2020-03-31

description: Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org) The contents of the compressed archive include the following files which are described in detail in the included README file. <br> 1.ATH_GO_GOSLIM.txt.gz<br> This document is a tab-delimited file containing GO annotations for Arabidopsis genes annotated by TAIR and TIGR with terms from the Gene Ontology Consortium controlled vocabularies (see www.geneontology.org). This file includes an updated set of literature based annotations and &gt;40,000 electronic annotations based upon matches to INTERPRO domains supplied by Nicola Mulder from SWISS PROT/INTERPRO. Please cite this paper when using TAIR's GO annotations in your research: Berardini, TZ, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, LM, Yoon, J, Doyle, A, Lander, G, Moseyko, N, Yoo, D, Xu, I, Zoeckler, B, Montoya, M, Miller, N, Weems, D, and Rhee, SY (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135(2):1-11. <br> 2.gene_aliases_yyyymmdd.txt(.gz)<br> This file lists alternative names for each gene. <br> 3.Locus_Germplasm_Phenotype_yyyymmdd.txt.gz<br> This file contains links between loci, germplasms, and phenotypes. <br> <br> 4.Locus_Published_yyyymmdd.txt.gz<br> This file contains links between loci and publications. <br> <br> 5.po_temporal_gene_arabidopsis_tair.assoc.gz<br> po_anatomy_gene_arabidopsis_tair.assoc.gz<br> These two files are tab-delimited files. Each contains the <br> set of literature-based annotations of Arabidopsis genes and loci annotated at TAIR to the terms from the Plant Ontology developed by the Plant Ontology Consortium (POC, www.plantontology.org). <br> 6.TAIR10 or ARAPORT11_functional_descriptions_yyyymmdd.txt(.gz)<br> This file contains functional descriptions for gene models included in either the TAIR 10 or as of 20170630 the Araport11 genome release. TAIR10/Araport11 refers to the version of the genome annotation.<br>
description: {"references": ["Berardini, TZ, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, LM, Yoon, J, Doyle, A, Lander, G, Moseyko, N, Yoo, D, Xu, I, Zoeckler, B, Montoya, M, Miller, N, Weems, D, and Rhee, SY (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135(2):1-11. DOI:10.1104/pp.104.040071", "Huala E, Dickerman AW, Garcia-Hernandez M, Weems D, Reiser L, LaFond F, Hanley D, Kiphart D, Zhuang M, Huang W, Mueller LA, Bhattacharyya D, Bhaya D, Sobral BW, Beavis W, Meinke DW, Town CD, Somerville C, Rhee SY. The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. Nucleic Acids Res. 2001 Jan 1;29(1):102-5. PubMed PMID: 11125061; PubMed Central PMCID: PMC29827."]}
DOI: 10.5281/zenodo.5273999
title: TAIR functional annotation data 2020-06-30

description: Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org) The contents of the compressed archive include the following files which are described in detail in the included README file. <br> 1.ATH_GO_GOSLIM.txt.gz<br> This document is a tab-delimited file containing GO annotations for Arabidopsis genes annotated by TAIR and TIGR with terms from the Gene Ontology Consortium controlled vocabularies (see www.geneontology.org). This file includes an updated set of literature based annotations and &gt;40,000 electronic annotations based upon matches to INTERPRO domains supplied by Nicola Mulder from SWISS PROT/INTERPRO. Please cite this paper when using TAIR's GO annotations in your research: Berardini, TZ, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, LM, Yoon, J, Doyle, A, Lander, G, Moseyko, N, Yoo, D, Xu, I, Zoeckler, B, Montoya, M, Miller, N, Weems, D, and Rhee, SY (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135(2):1-11. <br> 2.gene_aliases_yyyymmdd.txt(.gz)<br> This file lists alternative names for each gene. <br> 3.Locus_Germplasm_Phenotype_yyyymmdd.txt.gz<br> This file contains links between loci, germplasms, and phenotypes. <br> <br> 4.Locus_Published_yyyymmdd.txt.gz<br> This file contains links between loci and publications. <br> <br> 5.po_temporal_gene_arabidopsis_tair.assoc.gz<br> po_anatomy_gene_arabidopsis_tair.assoc.gz<br> These two files are tab-delimited files. Each contains the <br> set of literature-based annotations of Arabidopsis genes and loci annotated at TAIR to the terms from the Plant Ontology developed by the Plant Ontology Consortium (POC, www.plantontology.org). <br> 6.TAIR10 or ARAPORT11_functional_descriptions_yyyymmdd.txt(.gz)<br> This file contains functional descriptions for gene models included in either the TAIR 10 or as of 20170630 the Araport11 genome release. TAIR10/Araport11 refers to the version of the genome annotation.<br>
description: {"references": ["Berardini, TZ, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, LM, Yoon, J, Doyle, A, Lander, G, Moseyko, N, Yoo, D, Xu, I, Zoeckler, B, Montoya, M, Miller, N, Weems, D, and Rhee, SY (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135(2):1-11. DOI:10.1104/pp.104.040071", "Huala E, Dickerman AW, Garcia-Hernandez M, Weems D, Reiser L, LaFond F, Hanley D, Kiphart D, Zhuang M, Huang W, Mueller LA, Bhattacharyya D, Bhaya D, Sobral BW, Beavis W, Meinke DW, Town CD, Somerville C, Rhee SY. The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. Nucleic Acids Res. 2001 Jan 1;29(1):102-5. PubMed PMID: 11125061; PubMed Central PMCID: PMC29827."]}
DOI: 10.5281/zenodo.5553352
title: TAIR functional annotation data

description: Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org) The contents of the compressed archive include the following files which are described in detail in the included README file. <br> 1.ATH_GO_GOSLIM.txt.gz<br> This document is a tab-delimited file containing GO annotations for Arabidopsis genes annotated by TAIR and TIGR with terms from the Gene Ontology Consortium controlled vocabularies (see www.geneontology.org). This file includes an updated set of literature based annotations and &gt;40,000 electronic annotations based upon matches to INTERPRO domains supplied by Nicola Mulder from SWISS PROT/INTERPRO. Please cite this paper when using TAIR's GO annotations in your research: Berardini, TZ, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, LM, Yoon, J, Doyle, A, Lander, G, Moseyko, N, Yoo, D, Xu, I, Zoeckler, B, Montoya, M, Miller, N, Weems, D, and Rhee, SY (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135(2):1-11. <br> 2.gene_aliases_yyyymmdd.txt(.gz)<br> This file lists alternative names for each gene. <br> 3.Locus_Germplasm_Phenotype_yyyymmdd.txt.gz<br> This file contains links between loci, germplasms, and phenotypes. <br> <br> 4.Locus_Published_yyyymmdd.txt.gz<br> This file contains links between loci and publications. <br> <br> 5.po_temporal_gene_arabidopsis_tair.assoc.gz<br> po_anatomy_gene_arabidopsis_tair.assoc.gz<br> These two files are tab-delimited files. Each contains the <br> set of literature-based annotations of Arabidopsis genes and loci annotated at TAIR to the terms from the Plant Ontology developed by the Plant Ontology Consortium (POC, www.plantontology.org). <br> 6.TAIR10 or ARAPORT11_functional_descriptions_yyyymmdd.txt(.gz)<br> This file contains functional descriptions for gene models included in either the TAIR 10 or as of 20170630 the Araport11 genome release. TAIR10/Araport11 refers to the version of the genome annotation.<br>
description: {"references": ["Berardini, TZ, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, LM, Yoon, J, Doyle, A, Lander, G, Moseyko, N, Yoo, D, Xu, I, Zoeckler, B, Montoya, M, Miller, N, Weems, D, and Rhee, SY (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135(2):1-11. DOI:10.1104/pp.104.040071", "Huala E, Dickerman AW, Garcia-Hernandez M, Weems D, Reiser L, LaFond F, Hanley D, Kiphart D, Zhuang M, Huang W, Mueller LA, Bhattacharyya D, Bhaya D, Sobral BW, Beavis W, Meinke DW, Town CD, Somerville C, Rhee SY. The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. Nucleic Acids Res. 2001 Jan 1;29(1):102-5. PubMed PMID: 11125061; PubMed Central PMCID: PMC29827."]}
DOI: 10.5281/zenodo.7843877
title: TAIR functional annotation data

description: Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org) The contents of the compressed archive include the following files which are described in detail in the included README file. <br> 1.ATH_GO_GOSLIM.txt.gz<br> This document is a tab-delimited file containing GO annotations for Arabidopsis genes annotated by TAIR and TIGR with terms from the Gene Ontology Consortium controlled vocabularies (see www.geneontology.org). This file includes an updated set of literature based annotations and &gt;40,000 electronic annotations based upon matches to INTERPRO domains supplied by Nicola Mulder from SWISS PROT/INTERPRO. Please cite this paper when using TAIR's GO annotations in your research: Berardini, TZ, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, LM, Yoon, J, Doyle, A, Lander, G, Moseyko, N, Yoo, D, Xu, I, Zoeckler, B, Montoya, M, Miller, N, Weems, D, and Rhee, SY (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135(2):1-11. <br> 2.gene_aliases_yyyymmdd.txt(.gz)<br> This file lists alternative names for each gene. <br> 3.Locus_Germplasm_Phenotype_yyyymmdd.txt.gz<br> This file contains links between loci, germplasms, and phenotypes. <br> <br> 4.Locus_Published_yyyymmdd.txt.gz<br> This file contains links between loci and publications. <br> <br> 5.po_temporal_gene_arabidopsis_tair.assoc.gz<br> po_anatomy_gene_arabidopsis_tair.assoc.gz<br> These two files are tab-delimited files. Each contains the <br> set of literature-based annotations of Arabidopsis genes and loci annotated at TAIR to the terms from the Plant Ontology developed by the Plant Ontology Consortium (POC, www.plantontology.org). <br> 6.TAIR10 or ARAPORT11_functional_descriptions_yyyymmdd.txt(.gz)<br> This file contains functional descriptions for gene models included in either the TAIR 10 or as of 20170630 the Araport11 genome release. TAIR10/Araport11 refers to the version of the genome annotation.<br>
description: {"references": ["Berardini, TZ, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, LM, Yoon, J, Doyle, A, Lander, G, Moseyko, N, Yoo, D, Xu, I, Zoeckler, B, Montoya, M, Miller, N, Weems, D, and Rhee, SY (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135(2):1-11. DOI:10.1104/pp.104.040071", "Huala E, Dickerman AW, Garcia-Hernandez M, Weems D, Reiser L, LaFond F, Hanley D, Kiphart D, Zhuang M, Huang W, Mueller LA, Bhattacharyya D, Bhaya D, Sobral BW, Beavis W, Meinke DW, Town CD, Somerville C, Rhee SY. The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. Nucleic Acids Res. 2001 Jan 1;29(1):102-5. PubMed PMID: 11125061; PubMed Central PMCID: PMC29827."]}
DOI: 10.5281/zenodo.1422853
title: Tair Functional Annotation Data

description: Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org)

The contents of the compressed archive include the following files which are described in detail in the included README file.

<br>
1.ATH_GO_GOSLIM.txt.gz<br>
This document is a tab-delimited file containing GO annotations for Arabidopsis genes annotated by TAIR and TIGR with terms from the Gene Ontology Consortium controlled vocabularies (see www.geneontology.org). This file includes an updated set of literature based annotations and &gt;40,000 electronic annotations based upon matches to INTERPRO domains supplied by Nicola Mulder from SWISS PROT/INTERPRO. 

Please cite this paper when using TAIR's GO annotations in your research:  Berardini, TZ, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, LM, Yoon, J, Doyle, A, Lander, G, Moseyko, N, Yoo, D, Xu, I, Zoeckler, B, Montoya, M, Miller, N, Weems, D, and Rhee, SY (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135(2):1-11.  

<br>
2.gene_aliases_yyyymmdd.txt(.gz)<br>
This file lists alternative names for each gene.

<br>
3.Locus_Germplasm_Phenotype_yyyymmdd.txt.gz<br>
This file contains links between loci, germplasms, and phenotypes. <br>
<br>
4.Locus_Published_yyyymmdd.txt.gz<br>
This file contains links between loci and publications. <br>
<br>
5.po_temporal_gene_arabidopsis_tair.assoc.gz<br>
po_anatomy_gene_arabidopsis_tair.assoc.gz<br>
These two files are tab-delimited files. Each contains the <br>
set of literature-based annotations of Arabidopsis genes and loci annotated at TAIR to the terms from the Plant Ontology developed by the Plant Ontology Consortium (POC, www.plantontology.org).

<br>
6.TAIR10 or ARAPORT11_functional_descriptions_yyyymmdd.txt(.gz)<br>
This file contains functional descriptions for gene  models included in either the TAIR 10 or as of 20170630 the Araport11 genome release. TAIR10/Araport11 refers to the version of the genome annotation.<br>
description: {"references": ["Berardini, TZ, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, LM, Yoon, J, Doyle, A, Lander, G, Moseyko, N, Yoo, D, Xu, I, Zoeckler, B, Montoya, M, Miller, N, Weems, D, and Rhee, SY (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135(2):1-11. DOI:10.1104/pp.104.040071", "Huala E, Dickerman AW, Garcia-Hernandez M, Weems D, Reiser L, LaFond F, Hanley D, Kiphart D, Zhuang M, Huang W, Mueller LA, Bhattacharyya D, Bhaya D, Sobral BW, Beavis W, Meinke DW, Town CD, Somerville C, Rhee SY. The Arabidopsis Information  Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. Nucleic Acids Res. 2001 Jan 1;29(1):102-5. PubMed PMID: 11125061; PubMed Central PMCID: PMC29827."]}
DOI: 10.5281/zenodo.3958056
title: TAIR functional annotation data

description: Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org) The contents of the compressed archive include the following files which are described in detail in the included README file. <br> 1.ATH_GO_GOSLIM.txt.gz<br> This document is a tab-delimited file containing GO annotations for Arabidopsis genes annotated by TAIR and TIGR with terms from the Gene Ontology Consortium controlled vocabularies (see www.geneontology.org). This file includes an updated set of literature based annotations and &gt;40,000 electronic annotations based upon matches to INTERPRO domains supplied by Nicola Mulder from SWISS PROT/INTERPRO. Please cite this paper when using TAIR's GO annotations in your research: Berardini, TZ, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, LM, Yoon, J, Doyle, A, Lander, G, Moseyko, N, Yoo, D, Xu, I, Zoeckler, B, Montoya, M, Miller, N, Weems, D, and Rhee, SY (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135(2):1-11. <br> 2.gene_aliases_yyyymmdd.txt(.gz)<br> This file lists alternative names for each gene. <br> 3.Locus_Germplasm_Phenotype_yyyymmdd.txt.gz<br> This file contains links between loci, germplasms, and phenotypes. <br> <br> 4.Locus_Published_yyyymmdd.txt.gz<br> This file contains links between loci and publications. <br> <br> 5.po_temporal_gene_arabidopsis_tair.assoc.gz<br> po_anatomy_gene_arabidopsis_tair.assoc.gz<br> These two files are tab-delimited files. Each contains the <br> set of literature-based annotations of Arabidopsis genes and loci annotated at TAIR to the terms from the Plant Ontology developed by the Plant Ontology Consortium (POC, www.plantontology.org). <br> 6.TAIR10 or ARAPORT11_functional_descriptions_yyyymmdd.txt(.gz)<br> This file contains functional descriptions for gene models included in either the TAIR 10 or as of 20170630 the Araport11 genome release. TAIR10/Araport11 refers to the version of the genome annotation.<br>
description: {"references": ["Berardini, TZ, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, LM, Yoon, J, Doyle, A, Lander, G, Moseyko, N, Yoo, D, Xu, I, Zoeckler, B, Montoya, M, Miller, N, Weems, D, and Rhee, SY (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135(2):1-11. DOI:10.1104/pp.104.040071", "Huala E, Dickerman AW, Garcia-Hernandez M, Weems D, Reiser L, LaFond F, Hanley D, Kiphart D, Zhuang M, Huang W, Mueller LA, Bhattacharyya D, Bhaya D, Sobral BW, Beavis W, Meinke DW, Town CD, Somerville C, Rhee SY. The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. Nucleic Acids Res. 2001 Jan 1;29(1):102-5. PubMed PMID: 11125061; PubMed Central PMCID: PMC29827."]}
DOI: 10.5281/zenodo.7159097
title: TAIR functional annotation data

description: Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org) The contents of the compressed archive include the following files which are described in detail in the included README file. <br> 1.ATH_GO_GOSLIM.txt.gz<br> This document is a tab-delimited file containing GO annotations for Arabidopsis genes annotated by TAIR and TIGR with terms from the Gene Ontology Consortium controlled vocabularies (see www.geneontology.org). This file includes an updated set of literature based annotations and &gt;40,000 electronic annotations based upon matches to INTERPRO domains supplied by Nicola Mulder from SWISS PROT/INTERPRO. Please cite this paper when using TAIR's GO annotations in your research: Berardini, TZ, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, LM, Yoon, J, Doyle, A, Lander, G, Moseyko, N, Yoo, D, Xu, I, Zoeckler, B, Montoya, M, Miller, N, Weems, D, and Rhee, SY (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135(2):1-11. <br> 2.gene_aliases_yyyymmdd.txt(.gz)<br> This file lists alternative names for each gene. <br> 3.Locus_Germplasm_Phenotype_yyyymmdd.txt.gz<br> This file contains links between loci, germplasms, and phenotypes. <br> <br> 4.Locus_Published_yyyymmdd.txt.gz<br> This file contains links between loci and publications. <br> <br> 5.po_temporal_gene_arabidopsis_tair.assoc.gz<br> po_anatomy_gene_arabidopsis_tair.assoc.gz<br> These two files are tab-delimited files. Each contains the <br> set of literature-based annotations of Arabidopsis genes and loci annotated at TAIR to the terms from the Plant Ontology developed by the Plant Ontology Consortium (POC, www.plantontology.org). <br> 6.TAIR10 or ARAPORT11_functional_descriptions_yyyymmdd.txt(.gz)<br> This file contains functional descriptions for gene models included in either the TAIR 10 or as of 20170630 the Araport11 genome release. TAIR10/Araport11 refers to the version of the genome annotation.<br>
description: {"references": ["Berardini, TZ, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, LM, Yoon, J, Doyle, A, Lander, G, Moseyko, N, Yoo, D, Xu, I, Zoeckler, B, Montoya, M, Miller, N, Weems, D, and Rhee, SY (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135(2):1-11. DOI:10.1104/pp.104.040071", "Huala E, Dickerman AW, Garcia-Hernandez M, Weems D, Reiser L, LaFond F, Hanley D, Kiphart D, Zhuang M, Huang W, Mueller LA, Bhattacharyya D, Bhaya D, Sobral BW, Beavis W, Meinke DW, Town CD, Somerville C, Rhee SY. The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. Nucleic Acids Res. 2001 Jan 1;29(1):102-5. PubMed PMID: 11125061; PubMed Central PMCID: PMC29827."]}