cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/catrey
title: Studies in Mexican Grasshoppers: Liladownsia fraile, a new genus and species of Dactylotini (Acrididae: Melanoplinae) and an updated molecular phylogeny of Melanoplinae

description: This dataset contains the digitized treatments in Plazi based on the original journal article Woller, Derek A., Fontana, Paolo, Mariño-Pérez, Ricardo, Song, Hojun (2014): Studies in Mexican Grasshoppers: Liladownsia fraile, a new genus and species of Dactylotini (Acrididae: Melanoplinae) and an updated molecular phylogeny of Melanoplinae. Zootaxa 3793 (4): 475-495, DOI: http://dx.doi.org/10.11646/zootaxa.3793.4.6
DOI: 10.6084/m9.figshare.11859996
title: Genes and Pathways Affecting Q13 Sheep Productivity Traits: Genetic Parameters, Genome-wide Association Mapping, and Pathway Enrichment Analysis

description: Genotype data in plink format (tfiles) + Phenotype files
DOI: 10.6084/m9.figshare.11859996.v3
title: Genes and Pathways Affecting Q13 Sheep Productivity Traits: Genetic Parameters, Genome-wide Association Mapping, and Pathway Enrichment Analysis

description: Genotype data in plink format (tfiles) + Phenotype files
DOI: 10.6084/m9.figshare.11859996.v2
title: Genes and Pathways Affecting Q13 Sheep Productivity Traits: Genetic Parameters, Genome-wide Association Mapping, and Pathway Enrichment Analysis

description: Genotype data in plink format (tfiles) + Phenotype files
DOI: 10.6084/m9.figshare.14614560
title: Main figure data

description: Raw data plotted in our Nature Communications publication titled "Point-of-care Antimicrobial Coating Protects Orthopaedic Implants From Bacterial Challenge" The data is either in text file format or cvs.
DOI: 10.21954/ou.rd.14932131
title: iNaturalist Young People verifiable data

description: iNaturalist young volunteers' observations: data quality and contributions to biodiversity. <br>
DOI: 10.5281/zenodo.4922994
title: Distribution and occurrence frequency of dB/dt spikes during magnetic storms 1980 - 2019

description: Dataset and files linked to the study "Distribution and occurrence frequency of dB/dt spikes during magnetic storms 1980 - 2019" by A. Schillings et al., in Space Weather.
DOI: 10.5281/zenodo.4922993
title: Distribution and occurrence frequency of dB/dt spikes during magnetic storms 1980 - 2019

description: Dataset and files linked to the study "Distribution and occurrence frequency of dB/dt spikes during magnetic storms 1980 - 2019" by A. Schillings et al., in Space Weather.
DOI: 10.15468/wn75e7
title: Differentiation among cave populations of the Eukoenenia spelaea species-complex (Arachnida: Palpigradi) in the southwestern Alps

description: This dataset contains the digitized treatments in Plazi based on the original journal article Christian, Erhard, Isaia, Marco, Paschetta, Mauro, Bruckner, Alexander (2014): Differentiation among cave populations of the Eukoenenia spelaea species-complex (Arachnida: Palpigradi) in the southwestern Alps. Zootaxa 3794 (1): 52-86, DOI: http://dx.doi.org/10.11646/zootaxa.3794.1.2
DOI: 10.15468/rgwxxw
title: Silbermann’s “ Revue entomologique ”: Publication Dates for Nomenclatural Purposes and Bibliographic Notes (Insecta, mainly Coleoptera)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Nagel, Peter, Schmidlin, Lara (2014): Silbermann’s “ Revue entomologique ”: Publication Dates for Nomenclatural Purposes and Bibliographic Notes (Insecta, mainly Coleoptera). Zootaxa 3794 (1): 87-107, DOI: http://dx.doi.org/10.11646/zootaxa.3794.1.3
DOI: 10.34740/kaggle/dsv/2406707
title: COVID Vaccination in World (updated daily)
DOI: 10.15468/55ja2r
title: A new species of the Miniopterus schreibersii species complex (Chiroptera: Miniopteridae) from the Maghreb Region, North Africa

description: This dataset contains the digitized treatments in Plazi based on the original journal article Puechmaille, Sebastien J., Allegrini, Benjamin, Benda, Petr, Gürün, Kanat, Šrámek, Jan, Ibañez, Carlos, Juste, Javier, Bilgin, Rasit (2014): A new species of the Miniopterus schreibersii species complex (Chiroptera: Miniopteridae) from the Maghreb Region, North Africa. Zootaxa 3794 (1): 108-124, DOI: http://dx.doi.org/10.11646/zootaxa.3794.1.4
DOI: 10.5523/bris.22xc4ls5z02y426k8raaezytkp
title: Polar Vortex Review Data

description: Data used to make the plots in Geophysical Reviews paper.
DOI: 10.6073/pasta/bd1ea180b027735a608cb85cc869d4cb
title: Assessing Plant Phenological Character Displacement Across the Eastern United States Since 1895

description: Reproductive character displacement has long been hypothesized to be a key determinant of speciation and co-existence in flowering plants. A central tenet of this hypothesis is that reproductive traits of close relatives growing in sympatry diverge more than they do where close relatives do not grow together. However, this idea remains untested across taxa and at large spatial scales. Here, we use data collected from tens of thousands of herbarium specimens to examine evidence for character displacement in flowering time for 91 closely-related pairs of animal-pollinated angiosperm species in the eastern USA. We see no evidence for overall phenological divergence in sympatry across regions, clades, or life histories. Rather our results indicate widespread convergence of flowering times in sympatry for species pairs that generally tend to flower close in time. We also find that climate change could alter the nature of these convergent flowering events by shifting them further apart in a majority species pair comparisons. Specifically, congeneric species in New England and the Atlantic Coastal Plain are projected to flower 2–4 days further apart, on average, by the mid-21st century as warming temperatures drive species-specific phenological shifts within genera. This may have significant consequences for species interactions and gene flow, especially if current sympatric convergence in flowering times has resulted from facilitative interactions between species.
DOI: 10.5066/p9sd54qw
title: Assessment of nutrients and water-quality constituents in the North Delta during Yolo Bypass flooding events in March 2017

description: The data release contains data for the spatial and temporal variability of nutrients and related water quality parameters at high spatial resolution in the North Delta in the Sacramento-San Joaquin River Delta of California, USA. The data set includes nitrate, ammonium, phosphate, dissolved organic carbon, temperature, conductivity, dissolved oxygen, turbidity, and chlorophyll. Data-collection cruises were conducted over two days in March 2017 during a high flow event when Sacramento Valley flood waters inundate the Yolo Bypass.
DOI: 10.15468/b5g393
title: The genus Palaeagapetus Ulmer (Trichoptera, Hydroptilidae, Ptilocolepinae) in North America

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ito, Tomiko, Wisseman, Robert W., Morse, John C., Colbo, Murray H., Weaver Iii, John S. (2014): The genus Palaeagapetus Ulmer (Trichoptera, Hydroptilidae, Ptilocolepinae) in North America. Zootaxa 3794 (2): 201-221, DOI: http://dx.doi.org/10.11646/zootaxa.3794.2.1
DOI: 10.5281/zenodo.5018362
title: Machine learning designs non-hemolytic antimicrobial peptides

description: The upload contains additional primary data associated with the publication, including raw data in the original file format whenever possible. Data content: HRMS, HPLC-MS, CD, MD, TEM
description: {"references": ["Capecchi, Alice, Xingguang Cai, Hippolyte Personne, Thilo Kohler, Christian van Delden, and Jean-Louis Reymond. \"Machine Learning Designs Non-Hemolytic Antimicrobial Peptides.\" Chemical Science (2021)."]}
DOI: 10.5281/zenodo.5018361
title: Machine learning designs non-hemolytic antimicrobial peptides

description: The upload contains additional primary data associated with the publication, including raw data in the original file format whenever possible. Data content: HRMS, HPLC-MS, CD, MD, TEM
description: {"references": ["Capecchi, Alice, Xingguang Cai, Hippolyte Personne, Thilo Kohler, Christian van Delden, and Jean-Louis Reymond. \"Machine Learning Designs Non-Hemolytic Antimicrobial Peptides.\" Chemical Science (2021)."]}
DOI: 10.5517/ccdc.csd.cc21s8w0
title: CCDC 1900172: Experimental Crystal Structure Determination

description: Related Article: Jared L. Barr, Amit Kumar, Davide Lionetti, Carlos A. Cruz, James D. Blakemore|2019|Organometallics|38|2150|doi:10.1021/acs.organomet.9b00140
DOI: 10.5517/ccdc.csd.cc26n063
title: CCDC 2045014: Experimental Crystal Structure Determination

description: Related Article: Simon Doherty, Julian G. Knight, Hind Alshaikh James Wilson, Paul G. Waddell, Corinne Wills, Casey M. Dixon|2021|Eur.J.Inorg.Chem.|2021|226|doi:10.1002/ejic.202000948
DOI: 10.5517/ccdc.csd.cc26n0sp
title: CCDC 2045032: Experimental Crystal Structure Determination

description: Related Article: Pasquale Mastropierro, Alan R. Kennedy, Eva Hevia|2021|Eur.J.Inorg.Chem.|2021|1016|doi:10.1002/ejic.202001051
DOI: 10.5517/ccdc.csd.cc26n0tq
title: CCDC 2045033: Experimental Crystal Structure Determination

description: Related Article: Pasquale Mastropierro, Alan R. Kennedy, Eva Hevia|2021|Eur.J.Inorg.Chem.|2021|1016|doi:10.1002/ejic.202001051
DOI: 10.5517/ccdc.csd.cc26n0vr
title: CCDC 2045034: Experimental Crystal Structure Determination

description: Related Article: Pasquale Mastropierro, Alan R. Kennedy, Eva Hevia|2021|Eur.J.Inorg.Chem.|2021|1016|doi:10.1002/ejic.202001051
DOI: 10.5517/ccdc.csd.cc26n2dc
title: CCDC 2045082: Experimental Crystal Structure Determination

description: Related Article: Wenkun Yang, Pei Dong, Jian Xu, Jian Yang, Xiaohua Liu, Xiaoming Feng|2021|Chem.-Eur.J.|27|9272|doi:10.1002/chem.202100829
DOI: 10.5517/ccdc.csd.cc26p5fj
title: CCDC 2046137: Experimental Crystal Structure Determination

description: Related Article: Michał Magott, Bartłomiej Gaweł, Marcin Sarewicz, Mateusz Reczyński, Karolina Ogorzały, Wacław Makowski, Dawid Pinkowicz|2021|Chemical Science|12|9176|doi:10.1039/D1SC02060A
DOI: 10.5517/ccdc.csd.cc26p5gk
title: CCDC 2046138: Experimental Crystal Structure Determination

description: Related Article: Michał Magott, Bartłomiej Gaweł, Marcin Sarewicz, Mateusz Reczyński, Karolina Ogorzały, Wacław Makowski, Dawid Pinkowicz|2021|Chemical Science|12|9176|doi:10.1039/D1SC02060A
DOI: 10.5517/ccdc.csd.cc26png1
title: CCDC 2046603: Experimental Crystal Structure Determination

description: Related Article: Shou Yuan|2020|CSD Communication|||
description: Related Article: Shou Yuan, QiKun Sun, Yaguang Wang, Lingtai Yue, Jie Ma, Yuefa Zhang, Haichang Zhang, Shanfeng Xue, Wenjun Yang|2021|J.Mater.Chem.C|9|8302|doi:10.1039/D1TC01744F
DOI: 10.5517/ccdc.csd.cc26pnk4
title: CCDC 2046606: Experimental Crystal Structure Determination

description: Related Article: Shou Yuan, QiKun Sun, Yaguang Wang, Lingtai Yue, Jie Ma, Yuefa Zhang, Haichang Zhang, Shanfeng Xue, Wenjun Yang|2021|J.Mater.Chem.C|9|8302|doi:10.1039/D1TC01744F
DOI: 10.5517/ccdc.csd.cc26pnn7
title: CCDC 2046609: Experimental Crystal Structure Determination

description: Related Article: Xue-Hong Li, Jun-Fang Gong, Mao-Ping Song|2021|Org.Biomol.Chem.|19|5876|doi:10.1039/D1OB00656H
DOI: 10.5517/ccdc.csd.cc26qm7t
title: CCDC 2047526: Experimental Crystal Structure Determination

description: Related Article: Olga N. Kazheva, Denis M. Chudak, Gennady V. Shilov, Irina D. Kosenko, Georgy G. Abashev, Elena V. Shklyaeva, Andrey V. Kravchenko, Vladimir A. Starodub, Lev I. Buravov, Oleg A. Dyachenko, Vladimir I. Bregadze, Igor B. Sivaev|2021|J.Organomet.Chem.|949|121956|doi:10.1016/j.jorganchem.2021.121956
DOI: 10.5517/ccdc.csd.cc26qm8v
title: CCDC 2047527: Experimental Crystal Structure Determination

description: Related Article: Olga N. Kazheva, Denis M. Chudak, Gennady V. Shilov, Irina D. Kosenko, Georgy G. Abashev, Elena V. Shklyaeva, Andrey V. Kravchenko, Vladimir A. Starodub, Lev I. Buravov, Oleg A. Dyachenko, Vladimir I. Bregadze, Igor B. Sivaev|2021|J.Organomet.Chem.|949|121956|doi:10.1016/j.jorganchem.2021.121956
DOI: 10.5281/zenodo.5082553
title: Hysteresis behavior in dissociating hydrate-bearing sediments

description: In this study, we combined microfocus X-ray computed tomography (CT) and a pore network model (PNM) to analyse the effect of gas trapping on the hysteresis in capillary pressure <em>P</em><sub>c</sub> and relative permeability <em>k</em><sub>r</sub> in water-wet and gas-wet systems.
DOI: 10.5281/zenodo.5082552
title: Hysteresis behavior in dissociating hydrate-bearing sediments

description: In this study, we combined microfocus X-ray computed tomography (CT) and a pore network model (PNM) to analyse the effect of gas trapping on the hysteresis in capillary pressure <em>P</em><sub>c</sub> and relative permeability <em>k</em><sub>r</sub> in water-wet and gas-wet systems.
DOI: 10.6073/pasta/8cdf205f7fc32db3f26fffd709da0f96
title: Evaluation of Mask R-CNN Model for Counting Reproductive Structures of Six Plant Species 1895-2018

description: Phenology––the timing of life-history events––is a key trait for understanding responses of organisms to climate. The digitization and online mobilization of herbarium specimens is rapidly advancing our understanding of plant phenological response to climate and climatic change. The current common practice of manually harvesting data from individual specimens greatly restricts our ability to scale data collection to entire collections. Recent investigations have demonstrated that machine-learning models can facilitate data collection from herbarium specimens. However, present attempts have focused largely on simplistic binary coding of reproductive phenology (e.g., flowering or not). Here, we use crowd-sourced phenological data of numbers of buds, flowers, and fruits of more than 3000 specimens of six common wildflower species of the eastern United States (Anemone canadensis, A. hepatica, A. quinquefolia, Trillium erectum, T. grandiflorum, and T. undulatum} to train a model using Mask R-CNN to segment and count phenological features. A single global model was able to automate the binary coding of reproductive stage with greater than 90% accuracy. Segmenting and counting features were also successful, but accuracy varied with phenological stage and taxon. Counting buds was significantly more accurate than flowers or fruits. Moreover, botanical experts provided more reliable data than either crowd-sourcers or our Mask R-CNN model, highlighting the importance of high-quality human training data. Finally, we also demonstrated the transferability of our model to automated phenophase detection and counting of the three Trillium species, which have large and conspicuously-shaped reproductive organs. These results highlight the promise of our two-phase crowd-sourcing and machine-learning pipeline to segment and count reproductive features of herbarium specimens, providing high-quality data with which to study responses of plants to ongoing climatic change.
DOI: 10.6073/pasta/35444a9729f86a8b68b2df3068bb26ac
title: Impacts of Deer and Moose on Soil Carbon, Soil Respiration, and Root Biomass at Harvard Forest since 2017

description: Over the past decade, several deer and moose exclosures have been built at Harvard Forest to study the effect of ungulate browsing on tree regeneration, species diversity, and composition. We built on the existing infrastructure to study the impacts of deer and moose browsing on soil carbon stocks (soil C, root biomass) in regenerating forests.
DOI: 10.15482/usda.adc/1522862
title: Data from: A catalog of natural products occurring in watermelon - Citrullus lanatus
DOI: 10.6073/pasta/9a6f01590a8e30b81b2343913338eb70
title: Sap Flow in Red Maple and Red Oak in the Harvard Forest Snow Removal Study 2011

description: The climate is changing in mid and high latitude environments with the depth and duration of snowpack shrinking for many temperate forest ecosystems. A reduced snowpack and increased depth and duration of soil frost can injure fine roots, which are essential for plant water uptake. Water uptake is a crucial component of ecosystem functioning because this process strongly impacts other biological processes, such as primary productivity and nutrient uptake. We evaluated the effects of changing winter climate, including snow and soil frost dynamics, on rates of water uptake (i.e. sap flow) in a snow manipulation study at Harvard Forest. We had three reference and tree plots from which we removed snow and induced soil freezing.
DOI: 10.5281/zenodo.4916513
title: TSE surveillance and Atypical scrapie intensified monitoring data

description: GENERAL_DATA_AS_REPORT.xls: statutory TSE surveillance data of sheep and goats 2013-2019 from 22 countries. MANDATE_DATA_RAW_AS_REPORT.xls: raw data collated by the EC for the mandate EFSA-Q-2020-00662, including the results of the intensified monitoring implemented in flocks/herds from 22 countries in which a case of atypical scrapie has been confirmed MANDATE_DATA_ANALYSIS_AS_REPORT.xls: : data collated by the EC for the mandate EFSA-Q-2020-00662, including the results of the intensified monitoring implemented in flocks/herds from 22 countries in which a case of atypical scrapie has been confirmed, aggregated for analysis.
description: EU; XLSX; biocontam@efa.europa.eu
DOI: 10.5281/zenodo.4916512
title: TSE surveillance and Atypical scrapie intensified monitoring data

description: GENERAL_DATA_AS_REPORT.xls: statutory TSE surveillance data of sheep and goats 2013-2019 from 22 countries. MANDATE_DATA_RAW_AS_REPORT.xls: raw data collated by the EC for the mandate EFSA-Q-2020-00662, including the results of the intensified monitoring implemented in flocks/herds from 22 countries in which a case of atypical scrapie has been confirmed MANDATE_DATA_ANALYSIS_AS_REPORT.xls: : data collated by the EC for the mandate EFSA-Q-2020-00662, including the results of the intensified monitoring implemented in flocks/herds from 22 countries in which a case of atypical scrapie has been confirmed, aggregated for analysis.
description: EU; XLSX; biocontam@efa.europa.eu
DOI: 10.6084/m9.figshare.14102471
title: Functional Prediction

description: Functional prediction of SO virus
DOI: 10.6084/m9.figshare.14102471.v1
title: Functional Prediction

description: Functional prediction of SO virus
DOI: 10.6073/pasta/9607436bd267581e844fee6ea3f171c9
title: Crown Geometry Measurements of 14 Species in the CTFS-ForestGEO Plot at Harvard Forest 2013

description: Tree crown geometry and height, especially when coupled with remotely sensed data, can aid in the characterization of tree and forest structure. In this study, we collected crown geometry data (tree height, crown radius, and crown depth) in order to develop mixed-effects model allometric equations. We leveraged the already existing Center for Tropical Forest Science (CTFS) and Smithsonian Institute’s Forest Global Earth Observatory (ForestGEO) MegaPlot on Prospect Hill at Harvard Forest, Massachusetts to apply allometric equations. In total, we sampled 374 trees across 14 species. Developed allometry was applied to 2014 CTFS-ForestGEO census data to develop allometric canopy height models, which were compared to a lidar canopy height model acquired by NASA’s G-LiHT.
DOI: 10.5523/bris.35wbwau7yqq732vi13npzfuijf
title: Host plants as extended phenotypes of aposematic insects

description: Data and analysis scripts associated with the manuscript: McLellan, C.F., Scott-Samuel, N.E. and Cuthill, I.C. “Host plants as extended phenotypes of aposematic insects”
DOI: 10.6084/m9.figshare.14932653
title: Amino acid kmer-based analyses

description: Alarcon-Schumacher et al 2021, <i>msystems</i>Supplementary material
DOI: 10.6084/m9.figshare.14932653.v1
title: Amino acid kmer-based analyses

description: Alarcon-Schumacher et al 2021, <i>msystems</i>Supplementary material
DOI: 10.6084/m9.figshare.14345837.v1
title: Vibrant auxiliary metabolic genes

description: Alarcon-Schumacher et al 2021, <i>msystems</i>Supplementary material
DOI: 10.6084/m9.figshare.14345837
title: Vibrant auxiliary metabolic genes

description: Alarcon-Schumacher et al 2021, <i>msystems</i>Supplementary material
DOI: 10.5281/zenodo.5082689
title: CINECA synthetic cohort Europe CH SIB [CC-BY-NC-SA]

description: The “CINECA synthetic cohort EUROPE CH SIB” dataset consists of 6,733 synthetic samples with phenotypic and genotypic information. The synthetic phenotypic data were created from the CoLaus and PsyColaus cohort and the synthetic genetic data from the 1000 Genomes project. This dataset was created within the context of the CINECA project. More information about the creation of this dataset can be found in the included documentation. The phenotypic synthetic data is available under the Creative Commons Attribution (https://creativecommons.org/licenses/by/4.0/) and the genotypic data is available under the Creative Commons Attribution Non-Commercial Share-Alike license.To view a copy of the license, please visit: https://creativecommons.org/licenses/by-nc-sa/4.0/.
DOI: 10.5281/zenodo.4904335
title: CINECA synthetic cohort Europe CH SIB [CC-BY-NC-SA]

description: The “CINECA synthetic cohort EUROPE CH SIB” dataset consists of 6,733 synthetic samples with phenotypic and genotypic information. The synthetic phenotypic data were created from the CoLaus and PsyColaus cohort and the synthetic genetic data from the 1000 Genomes project. This dataset was created within the context of the CINECA project. More information about the creation of this dataset can be found in the included documentation. The phenotypic synthetic data is available under the Creative Commons Attribution (https://creativecommons.org/licenses/by/4.0/) and the genotypic data is available under the Creative Commons Attribution Non-Commercial Share-Alike license.To view a copy of the license, please visit: https://creativecommons.org/licenses/by-nc-sa/4.0/.
DOI: 10.5281/zenodo.5082700
title: BEIRUT: Repository Mining for Defect Prediction

description: This artifact includes two CSV files. The sample_metrics.csv contains a sample of 153 metrics extracted from project ratis. The sample_prediction.csv contains a sample of the prediction results from the application of defect prediction to the extracted metrics.
DOI: 10.5281/zenodo.5082699
title: BEIRUT: Repository Mining for Defect Prediction

description: This artifact includes two CSV files. The sample_metrics.csv contains a sample of 153 metrics extracted from project ratis. The sample_prediction.csv contains a sample of the prediction results from the application of defect prediction to the extracted metrics.
DOI: 10.15468/vmdngy
title: Diversity and systematics of Haminoeidae gastropods (Heterobranchia: Cephalaspidea) in the tropical West Pacific Ocean: new data on the genera Aliculastrum, Atys, Diniatys and Liloa

description: This dataset contains the digitized treatments in Plazi based on the original journal article Too, Chin Chin, Carlson, Clay, Hoff, Patty Jo, Malaquias, Manuel António E. (2014): Diversity and systematics of Haminoeidae gastropods (Heterobranchia: Cephalaspidea) in the tropical West Pacific Ocean: new data on the genera Aliculastrum, Atys, Diniatys and Liloa. Zootaxa 3794 (3): 355-392, DOI: http://dx.doi.org/10.11646/zootaxa.3794.3.3
DOI: 10.5281/zenodo.5076083
title: EXPLO. Sovjan 2021. OxCal code for radiocarbon dated tree-rings and charcoal

description: Code used for modelling radiocarbon dated tree-rings and previously published charcoal dates from the archaeological site of Sovjan. Software used: OxCal v4.4.2 (Bronk Ramsey, 2020; Dee and Bronk Ramsey, 2014) presented in "<em>The Early Bronze Age dendrochronology of Sovjan (Albania): A first tree-ring sequence of the 24th – 22nd c. BC for the southwestern Balkans</em>", Maczkowski et al., 2021, DOI: 10.1016/j.dendro.2021.125811