cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc1zlr6j
title: CCDC 1835268: Experimental Crystal Structure Determination

description: Related Article: Rawia Msalmi, Slim Elleuch, Besma Hamdi, Wesam Abd El-Fattah, Naoufel Ben Hamadi, Houcine Naïli|2022|RSC Advances|12|10431|doi:10.1039/D1RA08953F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc299g25
title: CCDC 2124246: Experimental Crystal Structure Determination

description: Related Article: Hung Huy Nguyen, Pham Quang Trung, Quan Manh Phung, Canh Dinh Le, Thu Thuy Pham, Ngoc Oanh Pham Thi, Chien Thang Pham|2022|J.Mol.Struct.|1269|133871|doi:10.1016/j.molstruc.2022.133871
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29bn9m
title: CCDC 2125400: Experimental Crystal Structure Determination

description: Related Article: Zhuo Wang, Xiaohan Ye, Meina Jin, Qi Tang, Shengyu Fan, Zhiguang Song, Xiaodong Shi|2022|Org.Lett.|24|3107|doi:10.1021/acs.orglett.2c00285
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29bnbn
title: CCDC 2125401: Experimental Crystal Structure Determination

description: Related Article: Zhuo Wang, Xiaohan Ye, Meina Jin, Qi Tang, Shengyu Fan, Zhiguang Song, Xiaodong Shi|2022|Org.Lett.|24|3107|doi:10.1021/acs.orglett.2c00285
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29cb45
title: CCDC 2126046: Experimental Crystal Structure Determination

description: Related Article: Nico Graw|2021|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29d923
title: CCDC 2126974: Experimental Crystal Structure Determination

description: Related Article: Adrien Madron du Vigné, Nicolai Cramer|2022|Organometallics|41|2731|doi:10.1021/acs.organomet.2c00351
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29d9mn
title: CCDC 2126991: Experimental Crystal Structure Determination

description: Related Article: Bamlaku Semagne Aweke, Cheng-Han Yu, Minna Zhi, Wen-Ching Chen, Glenn P. A. Yap, Lili Zhao, Tiow-Gan Ong|2022|Angew.Chem.,Int.Ed.|61|e202201884|doi:10.1002/anie.202201884
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.cx3tvw
title: Occurrence Download

description: A dataset containing 194 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Peru",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Begonia octopetala"
 ]
}

 The dataset includes 194 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046012-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc29d9tv
title: CCDC 2126997: Experimental Crystal Structure Determination

description: Related Article: Bamlaku Semagne Aweke, Cheng-Han Yu, Minna Zhi, Wen-Ching Chen, Glenn P. A. Yap, Lili Zhao, Tiow-Gan Ong|2022|Angew.Chem.,Int.Ed.|61|e202201884|doi:10.1002/anie.202201884
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.mx7mez
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Glyptothorax trewavasae)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046011-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17086906
title: Reference data bundle for PacificBiosciences/HiFi-human-WGS-WDL

description: Static input files to support alignment, variant calling, filtering, and annotation for human HiFi WGS using the GRCh38 reference.

https://github.com/PacificBiosciences/HiFi-human-WGS-WDL

hifi-wdl-resources-v3.1.0├── GRCh38│   ├── annotation│   │   ├── GRCh38.oddRegions.bed.gz│   │   ├── GRCh38.oddRegions.bed.gz.tbi│   │   ├── GRCh38.repeats.bed.gz│   │   ├── GRCh38.repeats.bed.gz.tbi│   │   ├── GRCh38.segdups.bed.gz│   │   ├── GRCh38.segdups.bed.gz.tbi│   │   └── README.md│   ├── ensembl.GRCh38.101.reformatted.gff3.gz│   ├── human_GRCh38_no_alt_analysis_set.fasta│   ├── human_GRCh38_no_alt_analysis_set.fasta.fai│   ├── methbat│   │   ├── cpgIslandExt.sorted.hg38.tsv│   │   └── README.md│   ├── pharmcat│   │   ├── pharmcat_positions_2.15.4.vcf.bgz│   │   ├── pharmcat_positions_2.15.4.vcf.bgz.csi│   │   └── README.md│   ├── README│   ├── sawfish│   │   ├── annotation_and_common_cnv.hg38.bed.gz│   │   ├── annotation_and_common_cnv.hg38.bed.gz.tbi│   │   ├── expected_cn.hg38.XX.bed│   │   ├── expected_cn.hg38.XY.bed│   │   └── README│   ├── slivar_gnotate│   │   ├── buildGnomad_v4│   │   ├── CoLoRSdb.GRCh38.v1.2.0.deepvariant.glnexus.zip│   │   ├── gnomad.hg38.v4.1.custom.v1.zip│   │   └── README.md│   ├── sv_pop_vcfs│   │   ├── CoLoRSdb.GRCh38.v1.2.0.pbsv.jasmine.vcf.gz│   │   ├── CoLoRSdb.GRCh38.v1.2.0.pbsv.jasmine.vcf.gz.tbi│   │   ├── gnomad.v4.1.sv.sites.pass.vcf.gz│   │   ├── gnomad.v4.1.sv.sites.pass.vcf.gz.tbi│   │   └── README.md│   └── trgt│       ├── adotto_strchive_20250827.hg38.bed.gz│       └── README.md├── GRCh38.ref_map.v3p1p0.template.tsv├── GRCh38.tertiary_map.v3p1p0.template.tsv└── slivar    ├── clinvar_gene_desc.20250618T144412.txt    ├── get_lof_gnomadv4.sh    ├── lof.gnomadv4p1.lookup    ├── README    ├── README.lof.md    └── slivar-functions.v0.2.8.js

9 directories, 40 files
DOI: 10.5281/zenodo.7922356
title: Reference data bundle for PacificBiosciences/HiFi-human-WGS-WDL

description: Static input files to support alignment, variant calling, filtering, and annotation for human HiFi WGS using the GRCh38 reference.

https://github.com/PacificBiosciences/HiFi-human-WGS-WDL

hifi-wdl-resources-v3.1.0├── GRCh38│   ├── annotation│   │   ├── GRCh38.oddRegions.bed.gz│   │   ├── GRCh38.oddRegions.bed.gz.tbi│   │   ├── GRCh38.repeats.bed.gz│   │   ├── GRCh38.repeats.bed.gz.tbi│   │   ├── GRCh38.segdups.bed.gz│   │   ├── GRCh38.segdups.bed.gz.tbi│   │   └── README.md│   ├── ensembl.GRCh38.101.reformatted.gff3.gz│   ├── human_GRCh38_no_alt_analysis_set.fasta│   ├── human_GRCh38_no_alt_analysis_set.fasta.fai│   ├── methbat│   │   ├── cpgIslandExt.sorted.hg38.tsv│   │   └── README.md│   ├── pharmcat│   │   ├── pharmcat_positions_2.15.4.vcf.bgz│   │   ├── pharmcat_positions_2.15.4.vcf.bgz.csi│   │   └── README.md│   ├── README│   ├── sawfish│   │   ├── annotation_and_common_cnv.hg38.bed.gz│   │   ├── annotation_and_common_cnv.hg38.bed.gz.tbi│   │   ├── expected_cn.hg38.XX.bed│   │   ├── expected_cn.hg38.XY.bed│   │   └── README│   ├── slivar_gnotate│   │   ├── buildGnomad_v4│   │   ├── CoLoRSdb.GRCh38.v1.2.0.deepvariant.glnexus.zip│   │   ├── gnomad.hg38.v4.1.custom.v1.zip│   │   └── README.md│   ├── sv_pop_vcfs│   │   ├── CoLoRSdb.GRCh38.v1.2.0.pbsv.jasmine.vcf.gz│   │   ├── CoLoRSdb.GRCh38.v1.2.0.pbsv.jasmine.vcf.gz.tbi│   │   ├── gnomad.v4.1.sv.sites.pass.vcf.gz│   │   ├── gnomad.v4.1.sv.sites.pass.vcf.gz.tbi│   │   └── README.md│   └── trgt│       ├── adotto_strchive_20250827.hg38.bed.gz│       └── README.md├── GRCh38.ref_map.v3p1p0.template.tsv├── GRCh38.tertiary_map.v3p1p0.template.tsv└── slivar    ├── clinvar_gene_desc.20250618T144412.txt    ├── get_lof_gnomadv4.sh    ├── lof.gnomadv4p1.lookup    ├── README    ├── README.lof.md    └── slivar-functions.v0.2.8.js

9 directories, 40 files
DOI: 10.6084/m9.figshare.30086701
title: Supplemental Figures and Tables for Manuscript Submitted to American Journal of Physiology-Endocrinology and Metabolism "Endogenous Expression of Cellular Communication Network Factor 5 (CCN5/WISP2) on Normal β-Cells Growth and Insulin Resistance Caused by Diet-Induced Obesity"

description: <b>Suppl. Table 1. </b>Analysis of body weight variations in CCN5 knockout versus wild-type mice. Body weight is presented as mean ± S.E.M. (N). <i>P</i> values were determined using an unpaired two-tailed Student’s t-test. Abbreviations: KO, Knock-out; WT, Wild-type.<b>Suppl. Fig. 1. </b>Basal fasted glucose concentrations in CCN5 knockout and wild-type mice. Blood glucose levels were measured after a 6-hour fast. Data are presented as mean ± S.E.M. for a pooled cohort of male and female mice aged 1.5–3.5 months (WT, n=12; KO, n=7). Statistical significance was determined using an unpaired two-tailed Student’s t-test.
DOI: 10.6084/m9.figshare.30086701.v1
title: Supplemental Figures and Tables for Manuscript Submitted to American Journal of Physiology-Endocrinology and Metabolism "Endogenous Expression of Cellular Communication Network Factor 5 (CCN5/WISP2) on Normal β-Cells Growth and Insulin Resistance Caused by Diet-Induced Obesity"

description: <b>Suppl. Table 1. </b>Analysis of body weight variations in CCN5 knockout versus wild-type mice. Body weight is presented as mean ± S.E.M. (N). <i>P</i> values were determined using an unpaired two-tailed Student’s t-test. Abbreviations: KO, Knock-out; WT, Wild-type.<b>Suppl. Fig. 1. </b>Basal fasted glucose concentrations in CCN5 knockout and wild-type mice. Blood glucose levels were measured after a 6-hour fast. Data are presented as mean ± S.E.M. for a pooled cohort of male and female mice aged 1.5–3.5 months (WT, n=12; KO, n=7). Statistical significance was determined using an unpaired two-tailed Student’s t-test.
DOI: 10.15468/dl.kxjem9
title: Occurrence Download

description: A dataset containing 336 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malachra fasciata",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 336 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046013-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.anxnp3
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malachra fasciata",
 "Country is Philippines",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046014-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7u5mfc
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malachra fasciata",
 "Country is Timor-Leste",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046015-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17087190
title: Computational-aided Design of Neutral Chiral Bidentate Tellurium-Triazoles for Enantioselective Chalcogen-Bonding Catalysis

description: Computational-aided Design of Neutral Chiral Bidentate Tellurium-Triazoles for Enantioselective Chalcogen-Bonding CatalysisLary Massold (1), James O'Brien (2), Kevin Fengler (1), Alica Keuper (1), Raquel Hidalgo (1), Cristina Trujillo (2), and Olga García Mancheño (1)(1) Organic Chemistry Institute, University of Münster, Corrensstraße 36, 48149 Münster, GermanyEmail: olga.garcia@uni-muenster.de(2) Department of Chemistry, University of Manchester, Oxford Road, Manchester, M139PL, U.K.Email: cristina.trujillodelvalle@manchester.ac.uk

Here contains the supporting information for the "Computational-aided Design of Neutral Chiral Bidentate Tellurium-Triazoles for Enantioselective Chalcogen-Bonding Catalysis" paper.

The supporting information contains the coordinates and data for each relevant geometry optimisation, transition state, and analytical technique conducted during this study.

The supporting information contains the following:

Table S1 - Coordinates and output files for each relevant geometry optimisation, transition state, and intrinsic reaction coordinate calculation for the uncatalysed reactionTable S2 - Coordinates and output files for each relevant geometry optimisation for the isolated conformers of catalyst 1aTable S3 - Coordinates and output files for each relevant geometry optimisation for the isolated conformers of catalyst 1bTable S4 - Coordinates and output files for each relevant geometry optimisation for the isolated conformers of catalyst 1cTable S5 - Coordinates for each relevant geometry optimisation for the dihedral angle scans of catalyst 1aTable S6 - Coordinates for each relevant geometry optimisation for the dihedral angle scans of catalyst 1bTable S7 - Coordinates for each relevant geometry optimisation for the dihedral angle scans of catalyst 1cTable S8 - Coordinates and output files for each relevant geometry optimisation for the complexes 1a-Cl-anionTable S9 - Coordinates and output files for each relevant geometry optimisation for the complexes 1b-Cl-anionTable S10 - Coordinates and output files for each relevant geometry optimisation for the complexes 1c-Cl-anionTable S11 - Data from NBO, QTAIM, and NCI analyses for complex 1c-Cl-anionTable S12 - Coordinates and output files for each relevant geometry optimisation for the complexes 1c-salt-complex
DOI: 10.15468/dl.nc6dam
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hemimyzon confluens)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046016-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/7q3-yyt-2gy
title: Brodoa intestiniformis (Vill.) Goward

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/qpp-bdz-ga0
title: Cladonia foliacea (Huds.) Willd.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/479-ybe-12j
title: Ramalina pollinaria (Westr.) Ach.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.p399h4
title: Occurrence Download

description: A dataset containing 432012 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Euphausiacea",
 "Year 1901-2025"
 ]
}

 The dataset includes 432012 records from 379 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045978-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/f0p-plz-ggk
title: Dimelaena oreina (Ach.) Norman

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.5281/zenodo.15230302
title: Highly Multiplexed 3D Profiling of Cell States and Immune Niches in Human Tumours

description: This respository hosts original code associated with "Highly Multiplexed 3D Profiling of Cell States and Immune Niches in Human Tumours". This includes 3D image registration, intensity quantification, cell shape & orientation analysis, collagen-to-cell distance quantification, and cell interaction analysis. See Data Access section for instructions on accessing the primary data associated with this paper.

TABLE OF CONTENTS



GENERAL INFORMATION



TITLE

AUTHORS AND BEST CONTACT

LICENSES

USEFUL LINKS



FILE ORGANIZATION



FILE TYPES

DATA ACCESS

FILE LIST




----

GENERAL INFORMATION





Publication: Highly Multiplexed 3D Profiling of Cell States and Immune Niches in Human Tumours. [Forthcoming].




Authors: Clarence Yapp, Ajit J. Nirmal, Felix Zhou, Alex Y.H. Wong, Juliann B. Tefft, Yi Daniel Lu, Zhiguo Shang,  Zoltan Maliga, Paula Montero Llopis, George F. Murphy, Christine G. Lian, Gaudenz Danuser, Sandro Santagata, and Peter K. Sorger




Contact Information: tissue-atlas(at)hms.harvard.edu or Peter Sorger; peter_sorger(at)hms.harvard.edu




Licenses/restrictions placed on the data: CC-BY creativecommons.org/licenses/by/4.0/


Useful links:



Preprint Publication: https://www.biorxiv.org/content/10.1101/2023.11.10.566670v4 

Associated GitHub Repository: labsyspharm/mel-3d-mis

To view the image data online, visit: https://www.tissue-atlas.org/atlas-datasets/yapp-nirmal-2023




----

FILE ORGANIZATION

FILE TYPES

Stitched and registered 3D multiplexed data is available for download through AWS.




File Type
Description
Location




N.ims



Stitched and registered 3D multiplexed CyCIF image pyramid in .ims format

AWS




DATA ACCESS

AWS Data Access: s3://lsp-public-data/yapp-2023-3d-melanoma/

Visit the following Zenodo page for instructions on how to access primary image data associated with this publication: Access Laboratory of Systems Pharmacology Datasets on AWS, DOI: 10.5281/zenodo.10223574











Contact: If you experience issues accessing the above AWS S3 buckets, email tissue-atlas(at)hms.harvard.edu with the subject line "s3://lsp-public-data/yapp-2023-3d-melanoma/: Data Access".  






 

FILE LIST






LSP Slide ID



File Name



File Size (GB)





LSP13626



Dataset1-LSP13626-invasive-margin.ims



935





LSP13626



Dataset1-LSP13626-melanoma-in-situ.ims



340





LSP13625



Dataset2-LSP13625-invasive-margin.ims



94





LSP13625



Dataset2-LSP13625-melanoma-in-situ.ims



103





LSP22409



Dataset2-LSP13625-melanoma-in-situ.im



614





LSP13357



LSP13357.ims



145





LSP17378



LSP17378.ims



385





LSP18251



LSP18251_TR3.ims



205





LSP18251



LSP18251_TR4.ims



288





LSP18251



LSP18251_TR5.ims



134





LSP22408



LSP22408.ims



2.5



 
 
3245.5
DOI: 10.5281/zenodo.10055593
title: Highly Multiplexed 3D Profiling of Cell States and Immune Niches in Human Tumours

description: This respository hosts original code associated with "Highly Multiplexed 3D Profiling of Cell States and Immune Niches in Human Tumours". This includes 3D image registration, intensity quantification, cell shape & orientation analysis, collagen-to-cell distance quantification, and cell interaction analysis. See Data Access section for instructions on accessing the primary data associated with this paper.

TABLE OF CONTENTS



GENERAL INFORMATION



TITLE

AUTHORS AND BEST CONTACT

LICENSES

USEFUL LINKS



FILE ORGANIZATION



FILE TYPES

DATA ACCESS

FILE LIST




----

GENERAL INFORMATION





Publication: Highly Multiplexed 3D Profiling of Cell States and Immune Niches in Human Tumours. [Forthcoming].




Authors: Clarence Yapp, Ajit J. Nirmal, Felix Zhou, Alex Y.H. Wong, Juliann B. Tefft, Yi Daniel Lu, Zhiguo Shang,  Zoltan Maliga, Paula Montero Llopis, George F. Murphy, Christine G. Lian, Gaudenz Danuser, Sandro Santagata, and Peter K. Sorger




Contact Information: tissue-atlas(at)hms.harvard.edu or Peter Sorger; peter_sorger(at)hms.harvard.edu




Licenses/restrictions placed on the data: CC-BY creativecommons.org/licenses/by/4.0/


Useful links:



Preprint Publication: https://www.biorxiv.org/content/10.1101/2023.11.10.566670v4 

Associated GitHub Repository: labsyspharm/mel-3d-mis

To view the image data online, visit: https://www.tissue-atlas.org/atlas-datasets/yapp-nirmal-2023




----

FILE ORGANIZATION

FILE TYPES

Stitched and registered 3D multiplexed data is available for download through AWS.




File Type
Description
Location




N.ims



Stitched and registered 3D multiplexed CyCIF image pyramid in .ims format

AWS




DATA ACCESS

AWS Data Access: s3://lsp-public-data/yapp-2023-3d-melanoma/

Visit the following Zenodo page for instructions on how to access primary image data associated with this publication: Access Laboratory of Systems Pharmacology Datasets on AWS, DOI: 10.5281/zenodo.10223574











Contact: If you experience issues accessing the above AWS S3 buckets, email tissue-atlas(at)hms.harvard.edu with the subject line "s3://lsp-public-data/yapp-2023-3d-melanoma/: Data Access".  






 

FILE LIST






LSP Slide ID



File Name



File Size (GB)





LSP13626



Dataset1-LSP13626-invasive-margin.ims



935





LSP13626



Dataset1-LSP13626-melanoma-in-situ.ims



340





LSP13625



Dataset2-LSP13625-invasive-margin.ims



94





LSP13625



Dataset2-LSP13625-melanoma-in-situ.ims



103





LSP22409



Dataset2-LSP13625-melanoma-in-situ.im



614





LSP13357



LSP13357.ims



145





LSP17378



LSP17378.ims



385





LSP18251



LSP18251_TR3.ims



205





LSP18251



LSP18251_TR4.ims



288





LSP18251



LSP18251_TR5.ims



134





LSP22408



LSP22408.ims



2.5



 
 
3245.5