cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15484101
title: REBIPP Plant-Pollinator Interactions Download - c9237635c2b727a5c6d266291a834d74519bf24b9eb7c57471ed61767713e8a2

description: A dataset containing all interactions available in REBIPP-PPI matching the query:
            
{"and":["Plant is Hymenaea stigonocarpa","Year anyany"]}
The dataset includes records from the following constituent datasets.
            The full metadata for each constituent is also included in this archive:
[object Promise]
DOI: 10.5281/zenodo.15484102
title: REBIPP Plant-Pollinator Interactions Download - c9237635c2b727a5c6d266291a834d74519bf24b9eb7c57471ed61767713e8a2

description: A dataset containing all interactions available in REBIPP-PPI matching the query:
            
{"and":["Plant is Hymenaea stigonocarpa","Year anyany"]}
The dataset includes records from the following constituent datasets.
            The full metadata for each constituent is also included in this archive:
[object Promise]
DOI: 10.5281/zenodo.15483834
title: Code and data files: Intraguild interactions drive community dynamics in invasive ants

description: This page includes the R script and data files required to replicate the analyses performed in the manuscript entitled "Intraguild interactions drive community dynamics in invasive ants". This work formed part of a PhD by Maximillian PTG Tercel to study the ecology of non-native ants on Round Island, Mauritius (funded by NERC, grant number NE/L002434/1). 

The analyses performed includes:



Analysis of diet composition differences between ant species and seasons using R package 'mvabund'

Visualisation of diet composition via NMDS

Analysis of whether ants consume other ants as expected or disproportionate to their abundance using R package 'econullnetr'

Co-occurrence analysis of ants inhabiting quadrats using R package 'cooccur'

Analysis of behaviour dominance and building of dominance hierarchies using R package 'aniDom'

Analysis of foraging time and relevant basic statistics using R package 'rstatix'

Construction of hypergraphs to determine the extent of potential exploitation competition using R packages 'DHARMa', 'igraph', 'emmeans', and 'scatterpie'


Additional R packages were used functionally as laid out in the R script.
DOI: 10.5281/zenodo.15483835
title: Code and data files: Intraguild interactions drive community dynamics in invasive ants

description: This page includes the R script and data files required to replicate the analyses performed in the manuscript entitled "Intraguild interactions drive community dynamics in invasive ants". This work formed part of a PhD by Maximillian PTG Tercel to study the ecology of non-native ants on Round Island, Mauritius (funded by NERC, grant number NE/L002434/1). 

The analyses performed includes:



Analysis of diet composition differences between ant species and seasons using R package 'mvabund'

Visualisation of diet composition via NMDS

Analysis of whether ants consume other ants as expected or disproportionate to their abundance using R package 'econullnetr'

Co-occurrence analysis of ants inhabiting quadrats using R package 'cooccur'

Analysis of behaviour dominance and building of dominance hierarchies using R package 'aniDom'

Analysis of foraging time and relevant basic statistics using R package 'rstatix'

Construction of hypergraphs to determine the extent of potential exploitation competition using R packages 'DHARMa', 'igraph', 'emmeans', and 'scatterpie'


Additional R packages were used functionally as laid out in the R script.
DOI: 10.5281/zenodo.15484071
title: TABLE 1 in A New Bernardia (Euphorbiaceae) with Stellate Trichomes from the Brazilian Cerrado

description: TABLE 1. Distinctive morphological features of B. allemii and B. gardneri.
CharactersB. allemiiB. gardneriHabitMulti-stemmed subshrub, usually with leaves near the base of the stemSingle-stemmed shrub, without leaves near the base of the stemOld branches (indumentum)Densely tomentoseGlabrous to puberulousLeaf size (cm)2.5–8.2 X 2.2–4.51–4.2 X 0.5–2VenationPalmati-pinnatePinnate to palmati-pinnateGland number and position on leavesAlways present (2–14), usually aggregated close to the blade base, sometimes near the apexSometimes absent or with 1–2(3) glands near the blade baseBracteole shapeUsually reniform to flabellateUsually linear to oblanceolateStamen number7–115–8Filament length (mm)1.3–20.6–1.2Pistillate bract size (mm)2.5–4.5 X 2.2–3.81–2 X 1–2.5Pistillate sepal size (mm)2.6–3.5 X 1.6–2.80.8–1.7 X 0.8–1.5
description: Published as part of Carrión, Juan F., Cordeiro, Inês & Amorim, André M., 2019, A New Bernardia (Euphorbiaceae) with Stellate Trichomes from the Brazilian Cerrado, pp. 830 in Systematic Botany (Basel, Switzerland) 44 (4) on page 830, DOI: 10.1600/036364419X15710776741431, http://zenodo.org/record/15483340
DOI: 10.5067/caliop/calipso/cal_lid_l15-standard-v1-01
title: CALIPSO Lidar Level 1.5 Profile, V1-01
DOI: 10.5281/zenodo.15484128
title: THE ROLE OF THE 3D MAX GRAPHICS PROGRAM IN CREATING TOPOGRAPHIC DRAWINGS.
DOI: 10.5281/zenodo.15484129
title: THE ROLE OF THE 3D MAX GRAPHICS PROGRAM IN CREATING TOPOGRAPHIC DRAWINGS.
DOI: 10.5067/aqua/ceres/flash_ssf-fm3-modis_l2.003b
title: CERES Level 2 FLASH SSF Aqua-FM3-MODIS HDF File - Version 3B
DOI: 10.5067/m3m/sageiii/cloud_hdf-eos_l3-v3.0
title: SAGE III Meteor-3M L2 Monthly Cloud Presence Data (HDF-EOS) V003
DOI: 10.5067/m3m/sageiii/cloud_binary_l3-v3.0
title: SAGE III Meteor-3M L2 Lunar Event Species Profiles (HDF-EOS) V003
DOI: 10.5067/m3m/sageiii/lunar_binary_l2-v3.0
title: SAGE III Meteor-3M L2 Lunar Event Species Profiles (Native) V003
DOI: 10.5067/m3m/sageiii/solar_hdf-eos_l2-v4.0
title: SAGE III Meteor-3M L2 Solar Event Species Profiles (HDF-EOS) V004
DOI: 10.5067/m3m/sageiii/solar_binary_l2-v4.0
title: SAGE III Meteor-3M L2 Solar Event Species Profiles (Native) V004
DOI: 10.5281/zenodo.15484140
title: UMUMTA'LIM MAKTABLARI O'QUVCHILARINING BILIMLARNI O'ZLASHTIRISH SIFATINI OSHIRISHDA MUAMMOLI TA'LIMNING O'ZIGA XOS XUSUSIYATLARI
DOI: 10.5281/zenodo.15484141
title: UMUMTA'LIM MAKTABLARI O'QUVCHILARINING BILIMLARNI O'ZLASHTIRISH SIFATINI OSHIRISHDA MUAMMOLI TA'LIMNING O'ZIGA XOS XUSUSIYATLARI
DOI: 10.5067/m3m/sageiii/solar_hdf-eos_l1b-v4.0
title: SAGE III Meteor-3M L1B Solar Event Transmission Data (HDF-EOS) V004
DOI: 10.5067/m3m/sageiii/solar_binary_l1b-v4.0
title: SAGE III Meteor-3M L1B Solar Event Transmission Data (Native) V004
DOI: 10.5067/gewexsrb/rel4-ip_longwave_3hrly_landonly_1
title: GEWEX SRB Integrated Product (Rel-4) Longwave 3-Hourly Land-only Fluxes
DOI: 10.5067/gewexsrb/rel4-ip_longwave_3hrly_oceanonly_1
title: GEWEX SRB Integrated Product (Rel-4) Longwave 3-Hourly Ocean-only Fluxes
DOI: 10.5067/gewexsrb/rel4-ip_longwave_daily_landonly_local_1
title: GEWEX SRB Integrated Product (Rel-4) Longwave Daily Average by Local Land-only Fluxes
DOI: 10.5067/gewexsrb/rel4-ip_longwave_daily_oceanonly_local_1
title: GEWEX SRB Integrated Product (Rel-4) Longwave Daily Average by Local Ocean-only Fluxes
DOI: 10.5067/gewexsrb/rel4-ip_longwave_monthly_landonly_local_1
title: GEWEX SRB Integrated Product (Rel-4) Longwave Monthly Average by local Land-only Fluxes
DOI: 10.5067/gewexsrb/rel4-ip_longwave_monthly_oceanonly_local_1
title: GEWEX SRB Integrated Product (Rel-4) Longwave Monthly Average by local Ocean-only Fluxes
DOI: 10.5281/zenodo.15484159
title: УСОВЕРШЕНСТВОВАНИЕ МЕТОДИКИ РАЗВИТИЯ КОМПЕТЕНТНОСТИ СТУДЕНТОВ-ИСКУССТВОВЕДОВ В УСЛОВИЯХ ЦИФРОВОГО ОБРАЗОВАНИЯ
DOI: 10.5281/zenodo.15484160
title: УСОВЕРШЕНСТВОВАНИЕ МЕТОДИКИ РАЗВИТИЯ КОМПЕТЕНТНОСТИ СТУДЕНТОВ-ИСКУССТВОВЕДОВ В УСЛОВИЯХ ЦИФРОВОГО ОБРАЗОВАНИЯ
DOI: 10.5519/qd.k8rjhpah
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (75 records)
DOI: 10.15468/dl.923fjt
title: Occurrence Download

description: A dataset containing 5211 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is South Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Acacia saligna (Labill.) H.L.Wendl."
 ]
}

 The dataset includes 5211 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012484-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7mdd9b
title: Occurrence Download

description: A dataset containing 1705 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-12.18342 35.89208,1.88510 35.89208,1.88510 41.51708,-12.18342 41.51708,-12.18342 35.89208))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hakea Schrad."
 ]
}

 The dataset includes 1705 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012486-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15484171
title: GENERAL CHARACTERISTICS OF THE TUBERCULOSIS PATHOGEN
DOI: 10.5281/zenodo.15484172
title: GENERAL CHARACTERISTICS OF THE TUBERCULOSIS PATHOGEN
DOI: 10.6084/m9.figshare.24785161.v2
title: People beyond the border in the sandbars of Damodar River: understanding the people’s management in a changing landscape, India

description: Sandbars are narrow ridges of sand formed by the river system in Bengal delta in eastern India. Some <i>charlands</i> or riverbeds of the Damodar River are situated along both its banks as well as in its central channel, offering habitats for both human populations and wildlife. Throughout its history, the river has been known as ‘Sorrow of Bengal’ owing to its frequent inundations and devastating impact. Since the partition of India in 1947, numerous sandbars have been colonized at various stages. Before partition, the area consisted of vast fields covered with bushes. This paper elaborates on the living conditions of marginalized people of Bangladesh and the local settlers who have inhabited the sandbars. They face a multitude of challenges, including safety concerns during storms, a lack of access to essential amenities like water, electricity, healthcare, education, and employment opportunities, as well as transportation difficulties. Sandbars are susceptible to flooding, necessitating frequent evacuations for the residents when massive floods occur. Additionally, these riverbeds are often geographically isolated from neighbouring landmasses. Despite these challenges, both refugees and local settlers have managed to adapt to life on these transient sandbars. The research also elucidates how communities often develop unique techniques and technologies to mitigate the challenges posed by the river. Finally, this study demonstrates that assessments of vulnerability and insecurity are arbitrary and insignificant; however, immediate survival is crucial.
DOI: 10.34740/kaggle/dsv/11899948
title: Top Spotify Songs in 73 Countries (Daily Updated)
DOI: 10.5281/zenodo.15446814
title: 1L BABY Run 1 Activation Foil Measurements

description: Neutron activation foil data from Niobium and Zirconium foils placed on the top and bottom of the DT neutron generator (~14 MeV) during the irradiation of 1L BABY Run 1. This placement meant that the foils were approximately 2 inches away from the center of the source. Activation foils were measured with two NaI detectors in a lead bunker and processed using the CoMPASS software. Calibration measurements from check sources and a background measurement are also included.
DOI: 10.5281/zenodo.15446815
title: 1L BABY Run 1 Activation Foil Measurements

description: Neutron activation foil data from Niobium and Zirconium foils placed on the top and bottom of the DT neutron generator (~14 MeV) during the irradiation of 1L BABY Run 1. This placement meant that the foils were approximately 2 inches away from the center of the source. Activation foils were measured with two NaI detectors in a lead bunker and processed using the CoMPASS software. Calibration measurements from check sources and a background measurement are also included.
DOI: 10.5281/zenodo.15446932
title: 1L BABY Run 2 Activation Foil Measurements

description: Neutron activation foil data from Niobium and Zirconium foils placed on the top and bottom of the DT neutron generator (~14 MeV) during the irradiation of 1L BABY Run 2. Activation foils were measured with two NaI detectors in a lead bunker and processed using the CoMPASS software. Calibration measurements from check sources and a background measurement are also included.
DOI: 10.5281/zenodo.15446933
title: 1L BABY Run 2 Activation Foil Measurements

description: Neutron activation foil data from Niobium and Zirconium foils placed on the top and bottom of the DT neutron generator (~14 MeV) during the irradiation of 1L BABY Run 2. Activation foils were measured with two NaI detectors in a lead bunker and processed using the CoMPASS software. Calibration measurements from check sources and a background measurement are also included.
DOI: 10.5281/zenodo.15447020
title: 1L BABY Run 3 Activation Foils Measurement

description: Neutron activation foil data from Niobium and Zirconium foils placed on the top and bottom of the DT neutron generator (~14 MeV) during the irradiation of 1L BABY Run 3. Activation foils were measured with two NaI detectors in a lead bunker and processed using the CoMPASS software. Calibration measurements from check sources and a background measurement are also included.
DOI: 10.5281/zenodo.15447021
title: 1L BABY Run 3 Activation Foils Measurement

description: Neutron activation foil data from Niobium and Zirconium foils placed on the top and bottom of the DT neutron generator (~14 MeV) during the irradiation of 1L BABY Run 3. Activation foils were measured with two NaI detectors in a lead bunker and processed using the CoMPASS software. Calibration measurements from check sources and a background measurement are also included.
DOI: 10.5281/zenodo.15447033
title: 1L BABY Run 4A Activation Foils Measurement

description: Neutron activation foil data from Niobium and Zirconium foils placed on the top and bottom of the DT neutron generator (~14 MeV) during the irradiation of 1L BABY Run 4A (first irradiation). Activation foils were measured with two NaI detectors in a lead bunker and processed using the CoMPASS software. Calibration measurements from check sources and a background measurement are also included.
DOI: 10.5281/zenodo.15447034
title: 1L BABY Run 4A Activation Foils Measurement

description: Neutron activation foil data from Niobium and Zirconium foils placed on the top and bottom of the DT neutron generator (~14 MeV) during the irradiation of 1L BABY Run 4A (first irradiation). Activation foils were measured with two NaI detectors in a lead bunker and processed using the CoMPASS software. Calibration measurements from check sources and a background measurement are also included.
DOI: 10.5281/zenodo.15447039
title: 1L BABY Run 4B Activation Foils Measurement

description: Neutron activation foil data from Niobium and Zirconium foils placed on the top and bottom of the DT neutron generator (~14 MeV) during the irradiation of 1L BABY Run 4B (second irradiation). Activation foils were measured with two NaI detectors in a lead bunker and processed using the CoMPASS software. Calibration measurements from check sources and a background measurement are also included.
DOI: 10.5281/zenodo.15447040
title: 1L BABY Run 4B Activation Foils Measurement

description: Neutron activation foil data from Niobium and Zirconium foils placed on the top and bottom of the DT neutron generator (~14 MeV) during the irradiation of 1L BABY Run 4B (second irradiation). Activation foils were measured with two NaI detectors in a lead bunker and processed using the CoMPASS software. Calibration measurements from check sources and a background measurement are also included.
DOI: 10.5281/zenodo.15484228
title: О ПОЖАРНЫХ РУКАВАХ
DOI: 10.5281/zenodo.15484229
title: О ПОЖАРНЫХ РУКАВАХ
DOI: 10.60635/c36c8m
title: Monthly summary_Sea Surface Temperature

description: Monthly summary of sea surface temperature data collected from near shore temperature sensors at depths ranging from 1 meter to 20 meters.
 Sensors are located in the following areas: Bay of Panama, Galeta (and locations to the east), Bocas del Torro, Gulf of Chiriqui (no longer active), Guna Yala (no longer active).
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Monthly_summary_Sea_Surface_Temperature/10059542
DOI: 10.5281/zenodo.15484256
title: DEVELOPMENT OF SPIRITUAL AND MORAL VIRTUES OF STUDENTS AND YOUTH THROUGH THE WORKS OF AL-HAKIM AT-TERMIZI.
DOI: 10.5281/zenodo.15484257
title: DEVELOPMENT OF SPIRITUAL AND MORAL VIRTUES OF STUDENTS AND YOUTH THROUGH THE WORKS OF AL-HAKIM AT-TERMIZI.
DOI: 10.22002/1pxgr-eqa61
title: Supplementary Tables: D-SPIN constructs gene regulatory network models from multiplexed scRNA-seq data revealing organizing principles of cellular perturbation response

description: Gene regulatory networks within cells modulate the expression of the genome in response to signals and changing environmental conditions. Reconstructions of gene regulatory networks can reveal the information processing and control principles used by cells to maintain homeostasis and execute cell-state transitions. Here, we introduce a computational framework, D-SPIN, that generates quantitative models of gene regulatory networks from single-cell mRNA-seq datasets collected across thousands of distinct perturbation conditions. D-SPIN constructs probabilistic models of regulatory interactions between genes or gene-expression programs to fit the cell state distributions under different perturbations. Using large Perturb-seq and drug-response datasets, we demonstrate that D-SPIN models reveal key regulators of cell fate decisions and the coordination of distant cellular pathways in response to gene knockdown perturbations. D-SPIN also dissects gene-level drug response mechanisms in heterogeneous cell populations, elucidating how combinations of immunomodulatory drugs acting on distinct regulators induce novel cell states through additive recruitment of gene expression programs. D-SPIN provides a computational framework for constructing interpretable models of gene regulatory networks to reveal principles of cellular information processing and physiological control.
DOI: 10.5281/zenodo.14908113
title: Processed exon counts from Lyme disease study (GEO accession number GSE63085)

description: We illustrate the use of different implementations of the hierarchical NB model by using a dataset obtained from an RNA-seq experiment Bouquet et al. [2016]. The raw data are publicly available under GEO accession number GSE63085. This is a processed dataset which contains 137,078 exons with a nonzero sum of counts across all samples, grouped into 18,765 protein-coding genes, were included in the analysis.
DOI: 10.5281/zenodo.15483985
title: Processed exon counts from Lyme disease study (GEO accession number GSE63085)

description: We illustrate the use of different implementations of the hierarchical NB model by using a dataset obtained from an RNA-seq experiment Bouquet et al. [2016]. The raw data are publicly available under GEO accession number GSE63085. This is a processed dataset containing 137,078 exons with a nonzero total count across all samples, grouped into 18,765 protein-coding genes included in the analysis.
DOI: 10.5281/zenodo.14908112
title: Processed exon counts from Lyme disease study (GEO accession number GSE63085)

description: We illustrate the use of different implementations of the hierarchical NB model by using a dataset obtained from an RNA-seq experiment Bouquet et al. [2016]. The raw data are publicly available under GEO accession number GSE63085. This is a processed dataset containing 137,078 exons with a nonzero total count across all samples, grouped into 18,765 protein-coding genes included in the analysis.
DOI: 10.5281/zenodo.15484235
title: Processed exon counts from Lyme disease study (GEO accession number GSE63085)

description: We illustrate the use of different implementations of the hierarchical NB model by using a dataset obtained from an RNA-seq experiment Bouquet et al. [2016]. The raw data are publicly available under GEO accession number GSE63085. This is a processed dataset containing 137,078 exons with a nonzero total count across all samples, grouped into 18,765 protein-coding genes included in the analysis.
DOI: 10.34740/kaggle/dsv/11900057
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.15380254
title: Load Estimation in Onshore Wind Farms Using Surrogate Modelling and Generic Turbine Models

description: Load Estimation in Onshore Wind Farms Using Surrogate Modelling and Generic Turbine Models


This record provides all necessary materials to reproduce the analyses and results presented in our paper, currently under review, on wind farm load estimation.

 



The codebase — including data processing pipelines, analysis scripts, and visualization tools — is maintained separately on GitHub (see link below).



Dependencies



Python version: 3.11.1

This project uses a local copy of OpenOA v.2.3 (https://github.com/NREL/OpenOA). Other dependencies are listed in the requirements.txt



Usage
To reproduce the results, follow these steps:





Download the code repository (see link below).

Download the dataset from Zenodo.

Unzip data.zip and replace the existing data/ directory in the code repository.

Install the required dependencies.


The analysis workflow is organized in Jupyter notebooks:



01_proc_raw_data.ipynb: Initial data processing and cleaning

02_sampling.ipynb: Data sampling procedures

03_gpr_training.ipynb: Gaussian Process Regression model training

03_pce_training.ipynb: Polynomial Chaos Expansion model training

04_case_study.ipynb: Application and evaluation of models in case study



Data Structure


data/

case_study/





predictions.pkl: Stored model predictions for the case study analysis




models/



gpr_models.pickle: Trained Gaussian Process Regression models

pce_models.pickle: Trained Polynomial Chaos Expansion models



samples/





sample_set.npy: Output of the 02_sampling.ipynb notebook.




scada/





farmdata_*: Processed farmdata including all turbines, ready for application




simulation/



sample_sim_setup/: A set of representative openfast files for one simulation case.

casematrix.csv: Simulation case definitions. Transformed to .csv from `sample_set.npy`

surrogate_data.csv: Processed 10min load variables by case number



turbines/



IEA-3.4-130-RWT/: IEA reference wind turbine model files (https://github.com/IEAWindSystems/IEA-3.4-130-RWT)

Adapted RWT model/: Above model with minor changes to better fit case study.


 




Contact



Alexander Mönnig: alexander.moennig@alterric.com

Ulrich Römer: u.roemer@tu-braunschweig.de