cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5257/wb/wdi/2020q4
title: World Development Indicators (WDI) (2020Q4 Edition)

description: The World Development Indicators is a compilation of relevant, high-quality, and internationally-comparable statistics about global development and the fight against poverty. The database contains over 1,000 time-series indicators for economies and country groups, with data for many indicators going back more than 50 years.
DOI: 10.5258/ecrystals/884
title: 02SRC656
DOI: 10.5281/zenodo.1254230
title: Data From: Individual Movement - Sequence Analysis Method (Im-Sam): Characterising Spatio-Temporal Patterns Of Animal Trajectories Across Scales And Landscapes

description: Dataset included in Zenodo supports the analyses performed in "<em>Individual Movement - Sequence Analysis Methods (IM-SAM) characterising spatio-temporal patterns of animal trajectories across scales and landscapes.</em>"

The dataset includes one RDS file, that can be easily loaded into R using the readRDS function. The RDS file consists out of a list including two objects per animal:


	Object 1 contains a data frame with the real and simulated sequences for an animal. e.g., ls[[1]][[1]] 
	Object 2 contains the home range in raster format of an animal. e.g., ls[[1]][[2]]


The data frames in object 1 contain real habitat use sequences and corresponding simulated habitat use sequences generated in the home range of the specific individual (900 simulated sequences: 6 habitat selection rules x 3 selection coefficients x 50 repetitions). Open and closed habitats are respectively encoded by 0 and 1. The first 96 columns of each row in a data frame represent a 16-day habitat use sequence, with a fixed 4-hour relocation interval (0, 4, 8, 12, 16 and 20h). Column names are named as follows: Day_1_0h, Day_1_4h,..., Day_16_20h. In the next columns we provide the selection coefficients (columns 97-99), the habitat selection rules (or pattern, columns 100-102) and the number of missing values (mvs, columns, 103-104) for each of the real and simulated sequences. Note that simulated sequences have no missing values (i.e. values are always 0.00) and for real sequences there is no selection coefficient or habitat selection rule (i.e. values are always xxx).

Rownames of simulated sequences are composed out of the habitat selection rule (c, o, a24, a33, a42 and u), the selection coefficient (5, 10, 50) and the replicate (1 to 50), separated by dashes. For example, the first simulated sequence in the first data frame (ls[[1]][[1]][1,]) is described as a24_10_1. The rownames of real sequences instead are composed out of the individuals' identifier, the biweekly period (1 to 23) and the year. For example, the first real sequence in the first data frame (ls[[1]][[1]][901,]) is described as 1_5_2006.

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DOI: 10.5281/zenodo.7186857
title: Data for: A general framework for modelling thermal and hydric constraints on eggs developing in soil

description: Data files to reproduce all the figures and appendices of "A general framework for modelling thermal and hydric constraints on eggs developing in soil".
DOI: 10.5284/1083529
title: An Early Medieval Town at Torksey, Lincolnshire

description: The impact of Scandinavian raiders and settlers on urbanisation is a major research question for understanding later Anglo-Saxon England. From 2012 onwards we have undertaken investigations at Torksey (Lincolnshire), as part of the broader 'Tents to Towns' project. Our research into the winter camp of the Viking 'Great Army' of 872-3 revealed extensive evidence for trade and manufacture across a c.55ha island, accommodating thousands of people (https://doi.org/10.5284/1018222). From 2019-21 we focussed on fields to the south of the modern village, which formed part of the early medieval town, and these investigations form the basis of this digital archive.
DOI: 10.5439/1025262
title: ARM: Precision Gas System (CO2): 2, 4, 25, 60 m

description: Precision Gas System (CO2): 2, 4, 25, 60 m
DOI: 10.6073/pasta/b763d8622a17123c5222c1a5179931f5
title: Water quality, phytoplankton, and zooplankton in the Sacramento Deep Water Ship Channel, CA

description: Drivers of phytoplankton and zooplankton dynamics vary spatially and temporally in estuaries due to variation in hydrodynamic exchange and residence time, complicating efforts to understand controls on food web productivity. We conducted approximately monthly (2012 – 2019; n = 74) longitudinal sampling at ten fixed stations along a freshwater tidal terminal channel in the San Francisco Estuary, California, characterized by seaward to landward gradients in water residence time, turbidity, nutrient concentrations, and plankton community composition. We used multivariate autoregressive state space (MARSS) models to quantify environmental (abiotic) and biotic controls on phytoplankton and mesozooplankton biomass. The importance of specific abiotic drivers (e.g. water temperature, turbidity, nutrients) and trophic interactions differed significantly among hydrodynamic exchange zones with different mean residence times. Abiotic drivers explained more variation in phytoplankton and zooplankton dynamics than a model including only trophic interactions, but individual phytoplankton-zooplankton interactions explained more variation than individual abiotic drivers. Interactions between zooplankton and phytoplankton were strongest in landward reaches with the longest residence times and the highest zooplankton biomass. Interactions between cryptophytes and both copepods and cladocerans were stronger than interactions between bacillariophytes (diatoms) and zooplankton taxa, despite contributing less biovolume in all but the most landward reaches. Our results demonstrate that trophic interactions and their relative strengths vary in a hydrodynamic context, contributing to food web heterogeneity within estuaries at spatial scales smaller than the freshwater to marine transition.
DOI: 10.6073/pasta/c74eba9dc8ddc41c19dc85e002a3f046
title: Maple Reproduction and Sap Flow at Harvard Forest since 2011

description: Seed production assures the persistence of tree populations and forest cover over the long-term, and so has long interested plant demographers and foresters. Many forest tree species produce seeds synchronously and at irregular intervals across large areas, a phenomenon known as masting. Initiated in spring 2011, this study addresses the mechanisms of mast seeding in sugar maple (Acer saccharum), and its impact on pollinators, seed consumers, and forest carbon dynamics at the Harvard Forest. We monitor seed production (via counts of seeds on trees), flower production, and resource status (via sap collection) on 20 trees. Pollination dynamics and seed predation (by weevils) were also monitored from 2012-2017. From 2015-2018, we monitored sap and seeds of red maple (Acer rubrum) trees to explore the hypothesis that this non-masting species would have muted dynamics compared to its masting congener.
DOI: 10.6084/m9.figshare.22242115
title: Supplementary Material for: Diagnostic utility of TUNEL staining for degenerative keratoacanthoma requiring pathologic differentiation from seborrheic keratosis

description: Tumors developed two older women presented with pathological findings similar to seborrheic keratosis, although the clinical feature of the tumor showed typical keratoacanthoma. In addition to these two cases, we compared the pathological results of a total of four cases, one case each of keratoacanthoma and seborrheic keratosis, which were clinically and histopathological typical. These two cases and the typical keratoacanthoma showed cell apoptosis by Terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL) staining and infiltration of cytotoxic T cells. The keratoacanthoma in the decompensated stage may be histologically similar to seborrheic keratosis. TUNEL staining can help in the diagnosis of fading keratoacanthoma.
DOI: 10.15124/c621e6eb-3212-49c6-8c1b-7431d1863dd4
title: Data for "In-beam γ-ray spectroscopy of 94Ag"

description: The open-access data and the meta-data for the paper "In-beam γ-ray spectroscopy of 94Ag" by X pereira-Lopez et al. Embargoed until the publication of the associated research paper
DOI: 10.5281/zenodo.5781234
title: Geophysical data from: "Lasting effects of soil compaction on soil water regime confirmed by geoelectrical monitoring"

description: The geophysical data presented herein were collected in the Soil Structure Observatory (see, Keller et. al. 2017) and were used in the manuscript titled: "Lasting effects of soil compaction on soil water regime confirmed by geoelectrical monitoring". The data set includes: 1. Seasonal and bi-hourly DC-resistivity data: DC-res.ods 2. Standard deviation of seasonal and bi-hourly DC-resistivity data: DC-res-std.ods 3. Volumetric water content data inferred from TDR data using Topp's equation at 10, 20, 40 and 70 cm. Water_content.ods 4. Temperature data at 10, 20, 40 and 70 cm. Temperature.ods 5. Meteorological data from 2013 to 2018 collected at the SSO: meteo.ods Data sets 1, 2, 3 and 4 were collected at the compacted ley (CL), non-compacted ley (NL) and compacted bare soil (CB) and non-compacted ley (NB) Keller, T., Colombi, T., Ruiz, S., Manalili, M. P., Rek, J., Stadelmann, V., ... & Schymanski, S. (2017). Long-Term Soil Structure Observatory for Monitoring Post-Compaction Evolution of Soil Structure. Vadose Zone Journal, 16(4).
DOI: 10.6073/pasta/a31de7704466bc78061ee332704f6f18
title: Mark-recapture data of the northern spring salamander (Gyrinophilus porphyriticus) in support of 2023 Lowe et al. Ecology

description: This dataset includes spatially explicit mark-recapture data of the Northern Spring Salamander (Gyrinophilus porphyriticus) collected during the summer months (June – August) from downstream and upstream reaches in multiple streams in the Hubbard Brook Experimental Forest. Downstream reaches begin at the confluence with the Main Hubbard and extend upstream 500 meters and upstream reaches begin at the weir and extend downstream 500 meters. Downstream reaches contain brook trout and upstream reaches do not. We used a robust design framework with 9 surveys per reach each summer (3 primary occasions with 3 secondary occasions each). Salamanders were captured by hand and marked with either Visual Implant Elastomer and/or a PIT tag. The data table herein is specific to the following publication: Lowe, W.H., B.R. Addis, M.M. Cochrane, and L.K. Swartz. In press. Source-sink dynamics within a complex life history. Ecology. These data are a subset of the primary long term dataset available at https://doi.org/10.6073/pasta/cd5f5a03df194930bf87eb12157b8182 These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.
DOI: 10.6075/j0wd40r1
title: Data from: Wave-tide interaction for a strongly modulated wave field

description: This collection contains the data sets and code required to generate each figure presented in the publication Ho, A., Merrifield, S. M., and Pizzo, N. (2022). Wave-tide interaction for a strongly modulated wave field. Journal of Physical Oceanography. Observations from Coastal Data Information Program (CDIP) moored buoys off the coast of Florida reveal tidally-driven wave current interactions that modify significant wave heights by up to 25% and shift peak periods by up to a second. A case study at Fernandina Beach, Florida shows surface waves steepening on following tidal currents and becoming less steep on opposing tidal currents, with the largest modulations occurring in the long-period swell band. To better understand tidal modulations as a function of the phase of the tide, we use simplified analytical and numerical solutions to the equations of geometrical optics and conservation of wave action under the assumption of a one-dimensional tide acting as a progressive shallow water wave. The theoretical frameworks allow us to identify parameters that characterize the magnitude of variation in surface waves due to tidally induced currents and changes in water depth. We compute modulations to the omnidirectional and directional wave spectrum (between 0.05-0.15Hz), as well as characteristic bulk parameters such as significant wave height and peak period. The theory is corroborated using directional wave and surface current observations from the Fernandina Beach CDIP station (located in water of average depth of 16 meters). We find that the numerical results reproduce the observed wave modulations due to tidal currents and changes in water depth. Specifically, surface waves traveling in the direction of tide are strongly modulated and the relative speeds between the tide and surface waves sets the sign and magnitude of these modulations. Given knowledge of tidal currents, water depth variations, and wave climatology, theoretical and numerical predictions may be used to provide both statistical and instantaneous estimates of wave height variations due to tides. As operational forecasts and nowcasts do not routinely include tides or currents, these findings can help in accurately representing nearshore surface wave variability. Wave data were furnished by the Coastal Data Information Program (CDIP), Integrative Oceanography Division, operated by the Scripps Institution of Oceanography, under the sponsorship of the U.S. Army Corps of Engineers and the California Department of Parks and Recreation. Water level data are from NOAA Tides and Currents. Bathymetry at Fernandina Beach is from NOAA National Centers for Environmental Information. All observational data used are publicly available at https://cdip.ucsd.edu/ and https://tidesandcurrents.noaa.gov/.
description: MATLAB R2021a
DOI: 10.14469/hpc/12004
title: Magnetopause Surface Mode Box Model data

description: Data from an analytic box model example of a magnetopause surface mode
DOI: 10.5281/zenodo.7237385
title: Exploring the lunar regolith's thickness and dielectric properties using band-limited impedance at Chang'E-4 landing site

description: Exploring the lunar regolith's thickness and dielectric properties using band-limited impedance at Chang'E-4 landing site (Journal of Geophysical Research - Planets #2022JE007540).
DOI: 10.6084/m9.figshare.21985196.v1
title: Data and graphics

description: Here we have the data of the spectrum of each source and the code we use to fit the curve in order to determine the source's degree of coherence. Also, we have the data from the depolarization experiments and the code we use to graphic the first and second-order degree of polarization.
DOI: 10.5281/zenodo.3471460
title: Nordic Market Model v1.0.0

description: Detailed market model of the Nordic countries. v1.0.0 Market clearing (zonal pricing - ATC based)<br> Market clearing (zonal pricing - flow-based) GitHub link: https://github.com/antosat/Nordic-Market-Model/tree/v1.0.0
DOI: 10.21232/dcplbyke
title: Ground-leaf CABO spectra from herbarium project

description: null
DOI: 10.25318/2510006301-eng
title: Supply and disposition of crude oil and equivalent

description: Supply and disposition characteristics such as production (fuels include heavy crude, synthetic crude, etc.), input to refineries, exports and others. The data are available at the national and provincial levels. Not all combinations necessarily have data for all years.
DOI: 10.25318/3210038001-eng
title: Renewable energy production, Census of Agriculture, 2021

description: Census of Agriculture, 2021. Farms reporting renewable energy production on the operation, regardless of ownership.
DOI: 10.5281/zenodo.5644692
title: Dataset for Temperature Development in Ultra-High-Performance Concrete-Filled Double-Skin Tubes Exposed to Fire

description: This dataset presents extensive experimental data available in the literature for concrete-filled tubes (CFT) and ductile concrete-filled double-skin tubes (CFDST) exposed to fire. Different concrete grades, including normal strength (NS), high strength (HS), and ultra-high-strength (UHS) concrete, were tested, and the temperature developments within various cross-sections are provided in the supplementary data. The density, specific heat, and conductivity that are temperature-dependent, are documented by different researchers and current specifications. The preferred models are provided for carbon-steel, stainless-steel, and different grades of concrete. Numerical studies such as those conducted by the authors in a companion paper would find value in this data for validation and verification purposes
DOI: 10.5281/zenodo.7434258
title: Huge variation in H2 generation during seawater alteration of ultramafic rocks: Dataset

description: Dataset associated with the <em>Geochemistry, Geophysics, Geosystems</em> paper, "Huge variation in H2 generation during seawater alteration of ultramafic rocks"
DOI: 10.5287/bodleian:xqvkxnmnx
title: Supporting the Teaching of Scientific Methods in Practical Science
DOI: 10.6084/m9.figshare.14999979.v1
title: Maximized Lake Dynamics Base Data - Bathymetry, Seeds, and Extents

description: Base datasets used in journal manuscript <i>Maximizing Multi-Decadal Water Surface Elevation Estimates with Landsat Imagery and Elevation/Bathymetry Datasets.</i><i><br></i>Contains merged dem/bathymetry datasets, lake seeds, and lake extents.
DOI: 10.6084/m9.figshare.19609503.v1
title: Data on the temporal changes in soil properties and microbiome composition after a jet-fuel contamination during the pot and field experiments

description: The response of soil microbiomes to the kerosene pollution is uncertain. Here, we model the influence of kerosene spillage on the composition of the topsoil microbiome in different soils (Fibric Histosols, Dystric Arenosols and Albic Luvisols) in pot and field experiments with different added kerosene loads (loads up to 100 g/kg; retention time up to 360 days), measuring kerosene concentration and sequencing variable regions of 16S ribosomal RNA in the microbial communities at different time points. Content: (1) Amplicon sequence variant (ASV) tables (after decontamination with decontam, removing of singletones, ASV assigned to “Chloroplast” and ASVs not classified at the domain level) with assigned taxonomy and phylogenetic tree) in phyloseq format: -kerosene_ASV_V3V4.rds -kerosene_ASV_V4V5.rds (2) Data on the kerosene content, soil physicochemical properties (рН, moisture, cation exchange capacity (CEC), content of soil organic matter (SOM), available phosphorus (Pav), potassium (Kav), exchangeable ammonium (NH4+), and water-soluble nitrate (NO3–)), as well as on biological consumption of oxygen and cellulolytic activity: -Soil_physicochemical_properties.tsv (3) Visualisation of taxonomic composition of samples in the middle of experiment (day 90 and 180 after treatment) in format of Krona plot. Samples were downsampled to 10000 counts, replicas were combined. On the plots the samples are marked in the format soil_typeOfExperiment_keroseneLoad. -kerosene_V3V4_krona.html -kerosene_V4V5_krona.html (4) Abundances of metabolic pathways in samples predicted by Picrust2 (files "path_abun_unstrat.tsv" from Picrust2 output). -kerosene_V3V4_pathways.tsv -kerosene_V4V5_pathways.tsv <br>
DOI: 10.6084/m9.figshare.20971855
title: Supplementary Material for: Drug Exposure and Risk of Microscopic Colitis: A Systematic Review and Meta-analysis

description: Background and objectives: Microscopic Colitis (MC) is a chronic inflammatory bowel disease, characterized by watery diarrhoea, normal radiological and endoscopic appearance. Concern regarding a potential association between drug exposure and MC has recently emerged. We sought to systematically review and summarize the evidence for the potential association. Methods: A systematic review and meta-analysis were performed to evaluate the incidence of MC associated with exposure to drug. The PubMed and Embase databases were searched to identify potential studies for inclusion. Results: Twelve case-control studies were included in the meta-analysis. The results showed exposure to NSAID (OR, 1.64; 95% CI 1.14-2.37; P&lt;0.001), PPI (OR, 2.36; 95% CI 1.59-3.52; P&lt;0.001), SSRI (OR, 2.16; 95% CI 1.5-3.13; P&lt;0.001), or aspirin (OR, 2.84; 95% CI 1.4–5.76; P &lt; 0.001) was related to the incidence of MC; however, such relationships in PPI and SSRI may be modulated by the selection of controls. Furthermore, we did not found a positive association with other drug exposure and MC. Conclusion: This meta-analysis indicated that NSAID, PPI, SSRI, or aspirin consumption may increase the risk for MC. Further studies exploring drug-induced microscopic colitis should include control groups with diarrhea, and not only healthy controls.
DOI: 10.12761/sgn.2016.01.023
title: Plant and bird interactions in Colombia

description: Data was gathered between February 2012 and February 2013 in Risaralda (Cordillera Central), Colombia. Fieldwork was carried out in two protected areas (Santuario de Flora y Fauna Otun Quimbaya and Regional Park Ucumari), in a late-successional forest. The first data set includes the observation of fruit removal by frugivorous birds on fleshy-fruited plants. The interactions were recorded in the morning (6:30 am to 12:30 m), in 10 plots (100 x 20 m) distributed along an elevational gradient (1800-2700 m). Each plot was separated by 100 m of elevation. In total, there was a sampling effort of 1200 h of observation, covering twice the dry and wet season in the study area. The interaction data set contains fruit removal of each frugivore on each plant species, the taxonomy of each plant species and each bird involved in the interactions. Fruit removal is the total number of fruits that each bird species took from each plant species. The data set includes the morphological traits of birds that were measured in the museums, four individual per species. The second data set includes the information of the number of seedlings recruited per plant species in two surveys. The surveys were carried out in March 2012 and February 2013 in 600 subplots (1m2) that were located randomly inside the plots (60 subplots per plot). This data set has three network metrics that measured the interaction level from the plant´s perspective and the functional identity of the bird traits that visited each plant species (community weighted mean value). The seed mass of this data set is the dry weight of each seed of a plant species. The plant traits were recorded in the field (plant height and crop mass) and the laboratory (fruit length, fruit width and seed mass).Fruit and seed size were obtained from 20 to 30 fruits/seeds per plant species (two or three individuals per species). The purpose of this data was to measure the trait effect on fruit removal and seedling recruitment in a tropical mountain.
DOI: 10.15785/sbgrid/971
title: X-Ray Diffraction data from Human ABCG5/G8 in complex with cholesterol, source of 8CUB structure

description: Native datasets