cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/72nts-5my65
title: Xanthomonas vs Caulobacter

description: Xac WT pBRaφ pBRR MCS5 GFP (code 9) vs Caulobacter competition
description: <strong>Tilt Series Date:</strong> 2017-03-09</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Xanthomonas citri</p>
<strong>Strain:</strong> pv citri 306</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Chuck Farah lab made the strains, data collected by Debnath Ghosal.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> 4 µL mixture of Xac and Caulobacter cells were pipetted on top of Au-Finder grids. These grids were glow discharged in advance and kept on top of Agar pads. Carbon side up. These were then kept at the BSL-II hood and left for about 10 min before freezing.</p>
<strong>Sample Preparation:</strong> Freezing conditions: Blot force 6, wait time=0, drain time =1 sec, blot time= 10 sec</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-03-09-50/rawdata/</p>Xac_Cc_20170309a0048.mrc,  Tilt Series (Pixel Size 0.39 nm), 882.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-03-09-50/rawdata/Xac_Cc_20170309a0048.mrc"
        > <i class="download icon"></i> Download </a></p>

        Xac_Cc_20170309a0048.rec,  Reconstruction (Pixel Size 1.56 nm), 889.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-03-09-50/3dimage_83091/Xac_Cc_20170309a0048.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.57760/sciencedb.xbyxb.00102
title: Supplementary Figures and Tables for “The Causal Relationship Between Circulating Cytokines and Keloids: A Mendelian Randomization Study”
title: 循环细胞因子与瘢痕疙瘩的因果关系，一项孟德尔随机化研究补充图表

description: This dataset serves as supplementary material for a bidirectional Mendelian randomization (MR) study aimed at exploring the causal relationship between circulating cytokines and the risk of keloid. The data include the characteristics of genetic instrumental variables related to cytokines, results from various MR analyses assessing keloid risk, global tests of MRPRESSO (both forward and reverse analyses), as well as MR leave-one-out sensitivity analysis plots.
description: This dataset serves as supplementary material for a bidirectional Mendelian randomization (MR) study aimed at exploring the causal relationship between circulating cytokines and the risk of keloid. The data include the characteristics of genetic instrumental variables related to cytokines, results from various MR analyses assessing keloid risk, global tests of MRPRESSO (both forward and reverse analyses), as well as MR leave-one-out sensitivity analysis plots.
DOI: 10.22002/skc3k-bny78
title: Saccharomyces cerevisiae - 6210

description: Raw data files of Saccharomyces cerevisiae - 6210
description: <strong>Tilt Series Date:</strong> 2017-04-08</p>
<strong>Data Taken By:</strong> Shrawan kumar Mageswaran</p>
<strong>Species / Specimen:</strong> Unspecified</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -10.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Obtained from Dr. Markus Babst, University of Utah</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown overnight in YPD, diluted to 0.2 OD in the morning and allowed to grow till OD ~0.6.</p>
<strong>Sample Preparation:</strong> Cells were diluted to an OD of 0.2-0.25 in YPD, applied to the grid, blotted from behind manually and plunge frozen in liquid ethane-propane mix. ~200 nm lamellae were FIB milled before imaging by TEM.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-04-08-2/rawdata/</p>TS10.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-04-08-2/rawdata/TS10.mrc"
        > <i class="download icon"></i> Download </a></p>

        TS10_4bin_DB.rec,  Reconstruction (Pixel Size 0.0 nm), 199.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-04-08-2/3dimage_86260/TS10_4bin_DB.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/k4gq2-bwc75
title: Coxiella_burnetii_ wtACCMD_pH4d5

description: Coxiella burnetii Nine Mile phase II clone 4 (NMIIC4) strain. Wild-type cells day-5 culture. Cells grown in acidic media ACCMD and pH 4.75
description: <strong>Tilt Series Date:</strong> 2017-09-30</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Coxiella burnetii</p>
<strong>Strain:</strong> Nine Mile phase II clone 4</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: -7.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Robert Heinzen. Data collected and processed by Debnath Ghosal using Caltech tomography pipeline.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in Robert Heinzen's lab @NIAID and ~50 ul cells were sent to us.</p>
<strong>Sample Preparation:</strong> Refer to Heinzen lab. Freezing: 100% humidity, 4µl sample, Blot force 6, blot time 4 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-09-30-13/rawdata/</p>Cb_d5pH4_20170930d0017.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-09-30-13/rawdata/Cb_d5pH4_20170930d0017.mrc"
        > <i class="download icon"></i> Download </a></p>

        Cb_d5pH4_20170930d0017_part61_5.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-09-30-13/3dimage_89031/Cb_d5pH4_20170930d0017_part61_5.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.7910/dvn/hr7avj
title: Wright Files I-Z Edited; Docketed Case: 20139
DOI: 10.7910/dvn/jwimpp
title: CES 2022, Team Module of University of Missouri (ZOU)

description: This dataverse contains the data and supporting documents for the CES 2022 Team Module of the University of Missouri. This project was supported by the National Science Foundation, Grant Number SES-2148907.
DOI: 10.7910/dvn/f3shve
title: Replication Data for: Defensive Issue Linkage - Exploring the Origins of Environmental Content in Trade Agreements

description: These datasets contain the data underlying the paper "Defensive Issue Linkage:
 Exploring the Origins of Environmental Content in Trade Agreements"
DOI: 10.7910/dvn/laorah
title: NOSSA GENTE 12

description: Newspaper
DOI: 10.7910/dvn/oee1ri
title: Disjoint-DABS: A Benchmark for Dynamic Aspect-Based Summarization in Disordered Texts

description: This is the dataset for the paper "Disjoint-DABS: A Benchmark for Dynamic Aspect-Based Summarization in Disorganized Texts". It includes two sub-datasets converted from CNN/DailyMail (D-CnnDM.zip) and WikiHow (D-WikiHow.zip). We include the data with training, validation, and test split. The file for training the summarization model is at (WikiHowSep.zip and CnnDM.zip) We also include the small-scale data for D-WikiHow used for prompting experiments (D-WikiHow-sample). The generated summaries for all baselines for further research, especially for human evaluation is included (result.zip).
DOI: 10.7910/dvn/f4ohce
title: Wright Casebook Edited; Docketed Case: 83-1160
DOI: 10.7910/dvn/5iomow
title: DEAC underwater camera reef, halo, and seagrass photos 2018-2019

description: This dataset contains over 85,000 underwater images collected between March 2018 and March 2019 at Lighthouse Reef Atoll, Belize. &lt;br&gt;&lt;br&gt;

All images were captured by Cuddeback trail cameras (model 1231) in hand-built underwater housings. Cameras took images every 15 minutes during daylight hours over multiple weeks- and months-long deployments. &lt;br&gt;&lt;br&gt;

Cameras were paired at patch reef sites throughout the atoll, one camera at the edge of the sand halo around the relevant patch reef, one camera placed twice the halo's width away in the surrounding seagrass or macroalgae. Approximately half of the cameras were deployed in the Half Moon Caye marine protected area (MPA), while the others were deployed elsewhere throughout the atoll. &lt;br&gt;&lt;br&gt;

All images have been named according to their capture site, date, and time using the camtrapR package (Niedballa et al. 2016) in R (R Core Team 2020). For most sites, this name designates protected area status (MPA or OUT), surrounding vegetation (g for grass or a for algae), site number within those conditions, and camera location (H for halo edge or C for seagrass), e.g. MPAg2H. Aside from renaming, images received no additional editing or post-processing. &lt;br&gt;&lt;br&gt;

Images are grouped in .zip archives by site and collection period. These file archives can be extracted using 7-Zip or any similar free utility. &lt;br&gt;&lt;br&gt;

The SortedFish.zip archives contain over 9,000 images hand-classified by researchers as containing at least one fish ("Yes") or containing no fish ("No"). These are further organized into folders by protected area (IN or OUT) and location (H for halo, C for seagrass/macroalgae). SortedFish.txt is a text file with a list of these same image file names and their folder locations within the SortedFish archives. These sorted images are a subset of the larger dataset and therefore will appear in other folders as well. &lt;br&gt;&lt;br&gt;

Image quality declined over time at many sites due to overgrowth by fouling organisms. Because of this, images deemed completely unsuitable for determining the presence/absence or identity of fish and other marine animals were removed from the dataset, although the images included here still vary in quality. &lt;br&gt;&lt;br&gt;

Further details of image collection, processing, and purpose can be found in "A low-cost, long-term underwater camera trap network coupled with deep residual learning image analysis" by Bilodeau et al. 2022 in PLOS ONE https://doi.org/10.1371/journal.pone.0263377. &lt;br&gt;
DOI: 10.7910/dvn/5c1fm
title: House Unpassed Legislation 1844, Docket 1410, SC1/series 230, Petition of Perley King

description: &lt;p&gt;Petition subject: Abolition of capital punishment &lt;/p&gt; &lt;p&gt;Original: &lt;a href="http://nrs.harvard.edu/urn-3:FHCL:13481349"&gt;http://nrs.harvard.edu/urn-3:FHCL:13481349&lt;/a&gt; &lt;/p&gt; &lt;p&gt;Date of creation: (unknown) &lt;/p&gt; &lt;p&gt;Petition location: Massachusetts &lt;/p&gt; &lt;p&gt;Legislator, committee, or address that the petition was sent to: Elijah Cobb, Brewster; committee on that subject &lt;/p&gt; &lt;p&gt;Selected signatures:&lt;ol&gt;&lt;li&gt;Perley King&lt;/li&gt;&lt;li&gt;Eli F. Burnham&lt;/li&gt;&lt;li&gt;Amos Trask&lt;/li&gt;&lt;li&gt;Asa Fairbanks&lt;/li&gt;&lt;li&gt;Frederick S. Cabot&lt;/li&gt;&lt;li&gt;Mary H. Lincoln&lt;/li&gt;&lt;li&gt;Joseph Noyes&lt;/li&gt;&lt;li&gt;Otis B. Norrill&lt;/li&gt;&lt;li&gt;John Curtis Jr.&lt;/li&gt;&lt;li&gt;Goodhue Ambrose&lt;/li&gt;&lt;li&gt;George Adams&lt;/li&gt;&lt;li&gt;George W. Simonds&lt;/li&gt;&lt;li&gt;Silas Leonard&lt;/li&gt;&lt;/ol&gt; &lt;/p&gt; &lt;p&gt;Actions taken on dates: 1844-01-31 &lt;/p&gt; &lt;p&gt;Legislative action: Received in the House on January 31, 1844 and referred to the committee on that subject &lt;/p&gt; &lt;p&gt;Total signatures: 27 &lt;/p&gt; &lt;p&gt;Legislative action summary: Received, referred &lt;/p&gt; &lt;p&gt;Legal voter signatures (males not identified as non-legal): 27 &lt;/p&gt; &lt;p&gt;Female only signatures: No &lt;/p&gt; &lt;p&gt;Identifications of signatories: citizens, [females], ["others"] &lt;/p&gt; &lt;p&gt;Prayer format was &lt;a href="http://en.wikipedia.org/wiki/Printing"&gt;printed&lt;/a&gt; vs. &lt;a href="http://en.wikipedia.org/wiki/Manuscript"&gt;manuscript&lt;/a&gt;: Printed &lt;/p&gt; &lt;p&gt;Signatory column format: not column separated &lt;/p&gt; &lt;p&gt;Additional non-petition or unrelated documents available at archive: no additional documents &lt;/p&gt; &lt;p&gt;Location of the petition at the Massachusetts Archives of the Commonwealth: House Unpassed 1844, Docket 1410 &lt;/p&gt; &lt;p&gt;Acknowledgements: Supported by the National Endowment for the Humanities (PW-5105612), Massachusetts Archives of the Commonwealth, Radcliffe Institute for Advanced Study at Harvard University, Center for American Political Studies at Harvard University, Institutional Development Initiative at Harvard University, and Harvard University Library.&lt;/p&gt;
DOI: 10.7910/dvn/jmh8aa
title: Wright Casebook Edited; Docketed Case: 80-1676
DOI: 10.7910/dvn/hxagsd
title: Long Read Sequencing solved a complex chromosomal rearrangment

description: In this dataset are contained the raw data of the long read sequencing using Nanopore technologies in a patient having a complex cromosomal rearrangement involving chromosomes 5 and 15
DOI: 10.7910/dvn/uvpnmb
title: Wright Casebook Edited; Docketed Case: 22,040
DOI: 10.7910/dvn/f0ua3
title: Massachusetts Archives Collection. v.220-Revolution Resolves, 1778-1779. SC1/series 45X, Petition of Mary Turell

description: &lt;p&gt;Petition subject: Property &lt;/p&gt; &lt;p&gt;Original: &lt;a href="http://nrs.harvard.edu/urn-3:FHCL:13906069"&gt;http://nrs.harvard.edu/urn-3:FHCL:13906069&lt;/a&gt; &lt;/p&gt; &lt;p&gt;Date of creation: 1778-09 &lt;/p&gt; &lt;p&gt;Petition location: Boston &lt;/p&gt; &lt;p&gt;Legislator, committee, or address that the petition was sent to: Committee on petitions for the sale of lands &lt;/p&gt; &lt;p&gt;Selected signatures:&lt;ol&gt;&lt;li&gt;Mary Turell&lt;/li&gt;&lt;/ol&gt; &lt;/p&gt; &lt;p&gt;Actions taken on dates: 1778-09-23,1778-10,1778-10-14 &lt;/p&gt; &lt;p&gt;Legislative action: Read on September 23, 1778 and committed to the committee on petitions for the sale of lands and received in the House in October 1778 and resolved and sent for concurrence and received in the Council on October 14, 1778 and read and concurred &lt;/p&gt; &lt;p&gt;Total signatures: 1 &lt;/p&gt; &lt;p&gt;Legislative action summary: Read, committed, received, resolved, sent, received, read, concurred &lt;/p&gt; &lt;p&gt;Female signatures: 1 &lt;/p&gt; &lt;p&gt;Female only signatures: Yes &lt;/p&gt; &lt;p&gt;Identifications of signatories: widow, guardian to Susannah Turell an infant, [females] &lt;/p&gt; &lt;p&gt;Prayer format was &lt;a href="http://en.wikipedia.org/wiki/Printing"&gt;printed&lt;/a&gt; vs. &lt;a href="http://en.wikipedia.org/wiki/Manuscript"&gt;manuscript&lt;/a&gt;: Manuscript &lt;/p&gt; &lt;p&gt;Additional archivist notes: John Thurber, Elizabeth Turell, Susanna Turell, Joseph Turell, de Bonis non, house, small lot of land, wharf, [see citation 17 in the book Observations on the Real Rights of Women and Other Writings, or google “‘John Thurber’ free”, information from the citation: reference to City Document No. 147, which gives number of years free negroes had been free and number of days they had to work for the town, stated that he owed 4 days to town of Boston, page 240] &lt;/p&gt; &lt;p&gt;Location of the petition at the Massachusetts Archives of the Commonwealth: Massachusetts Archives volume 220, pages 36-39 &lt;/p&gt; &lt;p&gt;Acknowledgements: Supported by the National Endowment for the Humanities (PW-5105612), Massachusetts Archives of the Commonwealth, Radcliffe Institute for Advanced Study at Harvard University, Center for American Political Studies at Harvard University, Institutional Development Initiative at Harvard University, and Harvard University Library.&lt;/p&gt;
DOI: 10.7910/dvn/87yox4
title: Wright Files I-Z Edited; Docketed Case: 22756
DOI: 10.7910/dvn/fjird5
title: Simulation of Flow and RTD in Serpentine Microchannel using OpenFOAM

description: This is a sample OpenFOAM case file for flow through serpentine microchannel. This contains the simulated case for the geometry parameter alpha = 0.6 & gamma = 4 at Reynolds number of 100 on OpenFOAM Version 2012
DOI: 10.7910/dvn/dp7b2b
title: Massachusetts Archives Collection. v.105-Petitions, 1643-1775. SC1/series 45X, Petition of Zabdiel Boylston

description: &lt;p&gt;Petition subject: Support for individuals &lt;/p&gt; &lt;p&gt;Original: &lt;a href="http://nrs.harvard.edu/urn-3:FHCL:13906029"&gt;http://nrs.harvard.edu/urn-3:FHCL:13906029&lt;/a&gt; &lt;/p&gt; &lt;p&gt;Date of creation: 1710 &lt;/p&gt; &lt;p&gt;Petition location: Boston &lt;/p&gt; &lt;p&gt;Selected signatures:&lt;ol&gt;&lt;li&gt;Zabdiel Boylston&lt;/li&gt;&lt;/ol&gt; &lt;/p&gt; &lt;p&gt;Actions taken on dates: 1710-06-16,1710-06-19,1710-06-20 &lt;/p&gt; &lt;p&gt;Legislative action: Received in the Council on June 16, 1710 and read and recommended to the House and sent for concurrence and received in the House on June 19, 1710 and read and resolved and sent for concurrence and received in the Council on June 20, 1710 and read and concurred &lt;/p&gt; &lt;p&gt;Total signatures: 1 &lt;/p&gt; &lt;p&gt;Legislative action summary: Received, read, recommended, sent, received, read, resolved, sent, received, read, concurred &lt;/p&gt; &lt;p&gt;Legal voter signatures (males not identified as non-legal): 1 &lt;/p&gt; &lt;p&gt;Female only signatures: No &lt;/p&gt; &lt;p&gt;Identifications of signatories: surgeon &lt;/p&gt; &lt;p&gt;Prayer format was &lt;a href="http://en.wikipedia.org/wiki/Printing"&gt;printed&lt;/a&gt; vs. &lt;a href="http://en.wikipedia.org/wiki/Manuscript"&gt;manuscript&lt;/a&gt;: Manuscript &lt;/p&gt; &lt;p&gt;Additional archivist notes: Mary Lyon, Boston neck &lt;/p&gt; &lt;p&gt;Location of the petition at the Massachusetts Archives of the Commonwealth: Massachusetts Archives volume 105, pages 60-61 &lt;/p&gt; &lt;p&gt;Acknowledgements: Supported by the National Endowment for the Humanities (PW-5105612), Massachusetts Archives of the Commonwealth, Radcliffe Institute for Advanced Study at Harvard University, Center for American Political Studies at Harvard University, Institutional Development Initiative at Harvard University, and Harvard University Library.&lt;/p&gt;
DOI: 10.7910/dvn/fijt3x
title: Replication data for: Questioning the Stability-Instability Paradox
DOI: 10.7910/dvn/pocdfp
title: Wright Files I-Z Edited; Docketed Case: 18287
DOI: 10.7910/dvn/89mkbj
title: Hispanic Health and Nutrition Examination Survey (HHANES)
title: Centers for Disease Control and Prevention (CDC)

description: Users can purchase data regarding health and nutrition of Hispanic-origin participants of a national survey. Topics include: dietary practices; diabetes; acculturation; and the health of children, adolescents and adults, among others.
&lt;p&gt;&lt;b&gt;Background&lt;/b&gt;&lt;/p&gt; The Hispanic Health and Nutrition Examination Survey (HHANES) was conducted by the Centers for Disease Control and Prevention (CDC). This nation-wide survey was conducted among Hispanic-origin respondents. This survey was conducted to generate estimates of the health of Hispanics in general and Latino subgroups. Topics include, but are not limited to: dietary practices, diabetes, depression, dental health, alcohol consumption, acculturation, child health, adolescent he
alth, and adult health. &lt;p&gt;&lt;b&gt;User Functionality&lt;/b&gt;&lt;/p&gt; Users can purchase the dataset. Demographic information is available by race/ethnicity, income, age group, sex/gender, education, and marital status. &lt;p&gt;&lt;b&gt;Data Notes&lt;/b&gt;&lt;/p&gt; Surveys were conducted among a national sample Hispanic-origin respondents ranging in age from 6 months to 74 years of age. Surveys were completed between 1982 and 1984 and information is available on a national level. Respondents include Mexican Americans living
in the southwestern states; Cuban-Americans in Florida; and Puerto Ricans in New York, Connecticut, and New Jersey. Data can be purchased through the National Technical Information Service (NTIS).
DOI: 10.7910/dvn/cqtwe1
title: Oral Fluids Liquid-to-Liquid Extraction Assay Data

description: Oral Fluids Liquid-to-Liquid Extraction Assay Data
DOI: 10.7910/dvn/vbovvw
title: van der Waals interfacial junction transistor

description: The data of a published paper regarding van der Waals interfacial junction transistor, DOI number 10.1038/s41928-024-01256-3,
DOI: 10.7910/dvn/3fceml
title: Replication Data for: Identification of Novel Neisseria gonorrhoeae Lineages Harboring Resistance Plasmids in Coastal Kenya

description: &lt;p&gt;Africa has the highest incidence of gonorrhea in the world. However, little is known about gonococcal populations in this continent or mechanisms of antimicrobial resistance (AMR).&lt;/p&gt;

&lt;p&gt;Whole-genome sequence data were analyzed from 103 Neisseria gonorrhoeae isolates from 73 patients, mainly men who have sex with men, from coastal Kenya. We annotated loci, defined the core genome, defined mechanisms of AMR, and performed phylogenetic analysis. For patients with multiple episodes of gonorrhea, we determined whether infections occurred with related strains.&lt;/p&gt;

&lt;p&gt;We identified 3 clusters of isolates that are phylogenetically distinct from isolates found elsewhere. Plasmids were virtually ubiquitous: pTetM and pblaTEM were found in 97%, and 55% of isolates, respectively. This was associated with high doxycycline use for undiagnosed sexually transmitted infections. Twenty-three percent of multiple episodes of gonorrhea in the same individual were caused by a related strain, suggesting inadequate treatment or reinfection.&lt;/p&gt;
description: <strong>Data Availability:</strong> 
DNA was sequenced using Illumina HiSeq, and reads were assembled using the Velvet assembly program with VelvetOptimiser [14]. The resultant assemblies were uploaded to the pubMLST database (available at: http://www.pubmlst.org/neisseria), where data are publicly available, and linked to the European Nucleotide Archive (accession numbers ERR1143657–ERR976965, Supplementary Table1

<strong> Data Access:</strong> Open

<strong>License:</strong> Creative Commons Attribution 4.0 International