cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.c4kfy9
title: Occurrence Download

description: A dataset containing 552 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Coordinate rounded, Geodetic datum assumed WGS84, Coordinate reprojected, Country derived from coordinates, Continent derived from coordinates)",
 "TaxonKey is Nolina parviflora (Kunth) Hemsl."
 ]
}

 The dataset includes 552 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004485-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14903620
title: AMPERE Summary Plot Movies (2014-Mar)

description: 2014-Mar AMPERE summary plot movies. See included zenodo_summary_plot_movie_description document for details.
DOI: 10.5281/zenodo.14903621
title: AMPERE Summary Plot Movies (2014-Mar)

description: 2014-Mar AMPERE summary plot movies. See included zenodo_summary_plot_movie_description document for details.
DOI: 10.15468/dl.8u2v8k
title: Occurrence Download

description: A dataset containing 126 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Coordinate rounded, Geodetic datum assumed WGS84, Coordinate reprojected, Continent derived from coordinates, Country derived from coordinates)",
 "OccurrenceStatus is Present",
 "TaxonKey is Senecio grandifolius Less."
 ]
}

 The dataset includes 126 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004486-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60797/geo.2025.2.3.1
title: Месторождения полезных ископаемых черных металлов и элементов группы Платина в Бурунди

description: Cifra. Науки о Земле и окружающей среде, Выпуск 1 (2) 2025
DOI: 10.15468/dl.vsfsp9
title: Occurrence Download

description: A dataset containing 148329 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((141.08886 -11.52445,143.49944 -11.52445,143.49944 -8.82808,141.08886 -8.82808,141.08886 -11.52445))",
 "HasGeospatialIssue is false",
 "TaxonKey is Chordata"
 ]
}

 The dataset includes 148329 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004464-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/10809989
title: Layline Shareholder activism dataset
DOI: 10.15468/dl.452k6p
title: Occurrence Download

description: A dataset containing 215 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Montecincla meridionalis (Blanford, 1880)",
 "Year 2000-2025"
 ]
}

 The dataset includes 215 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004487-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h82udd
title: Occurrence Download

description: A dataset containing 157632 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Geometry POLYGON((-112.13 26.97,-92.94 26.97,-92.94 36.9,-112.13 36.9,-112.13 26.97))",
 "HasCoordinate is true",
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Fungi"
 ]
}

 The dataset includes 157632 records from 161 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004479-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28455900
title: Additional file 3 of Evaluation of crossbreeding strategies for improved adaptation and productivity in African smallholder cattle farms

description: Additional file 3: Table S3. Phenotypic and genetic parameters for simulated local and exotic breeds with regard to genetic correlation between traits ( $${r}_{g}$$ r g ) and between local and exotic environement ( $${r}_{g\times e}$$ r g × e ).
DOI: 10.6084/m9.figshare.28455900.v1
title: Additional file 3 of Evaluation of crossbreeding strategies for improved adaptation and productivity in African smallholder cattle farms

description: Additional file 3: Table S3. Phenotypic and genetic parameters for simulated local and exotic breeds with regard to genetic correlation between traits ( $${r}_{g}$$ r g ) and between local and exotic environement ( $${r}_{g\times e}$$ r g × e ).
DOI: 10.6084/m9.figshare.28455920
title: Additional file 2 of Multiple regulatory events contribute to a widespread circular RNA downregulation in precancer and early stage of colorectal cancer development

description: Supplementary Material 2: Table S1. Excel file containing additional data too large to fit in a PDF, related to Figure 2 and 3.
DOI: 10.6084/m9.figshare.28455923
title: Additional file 3 of Multiple regulatory events contribute to a widespread circular RNA downregulation in precancer and early stage of colorectal cancer development

description: Supplementary Material 3: Table S2. Excel file containing even more data too large to fit in a PDF, related to Figure 4.
DOI: 10.6084/m9.figshare.28455920.v1
title: Additional file 2 of Multiple regulatory events contribute to a widespread circular RNA downregulation in precancer and early stage of colorectal cancer development

description: Supplementary Material 2: Table S1. Excel file containing additional data too large to fit in a PDF, related to Figure 2 and 3.
DOI: 10.6084/m9.figshare.28455923.v1
title: Additional file 3 of Multiple regulatory events contribute to a widespread circular RNA downregulation in precancer and early stage of colorectal cancer development

description: Supplementary Material 3: Table S2. Excel file containing even more data too large to fit in a PDF, related to Figure 4.
DOI: 10.6084/m9.figshare.28455926
title: Additional file 4 of Multiple regulatory events contribute to a widespread circular RNA downregulation in precancer and early stage of colorectal cancer development

description: Supplementary Material 4: Table S3. Excel file containing even more data too large to fit in a PDF, related to Figure 5.
DOI: 10.6084/m9.figshare.28455926.v1
title: Additional file 4 of Multiple regulatory events contribute to a widespread circular RNA downregulation in precancer and early stage of colorectal cancer development

description: Supplementary Material 4: Table S3. Excel file containing even more data too large to fit in a PDF, related to Figure 5.
DOI: 10.15468/dl.mzcp43
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Coordinate rounded, Geodetic datum assumed WGS84, Coordinate reprojected, Continent derived from coordinates, Country derived from coordinates)",
 "OccurrenceStatus is Present",
 "TaxonKey is Rubus adenotrichus Schltdl."
 ]
}

 The dataset includes 20 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004488-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28455921
title: Additional file 1 of A novel recombinant PHB production platform in filamentous cyanobacteria avoiding nitrogen starvation while preserving cell viability

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.28455921.v1
title: Additional file 1 of A novel recombinant PHB production platform in filamentous cyanobacteria avoiding nitrogen starvation while preserving cell viability

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.28455924
title: Additional file 2 of A novel recombinant PHB production platform in filamentous cyanobacteria avoiding nitrogen starvation while preserving cell viability

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.28455924.v1
title: Additional file 2 of A novel recombinant PHB production platform in filamentous cyanobacteria avoiding nitrogen starvation while preserving cell viability

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.28455927
title: Additional file 3 of A novel recombinant PHB production platform in filamentous cyanobacteria avoiding nitrogen starvation while preserving cell viability

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.28455927.v1
title: Additional file 3 of A novel recombinant PHB production platform in filamentous cyanobacteria avoiding nitrogen starvation while preserving cell viability

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.28455936
title: Additional file 6 of A novel recombinant PHB production platform in filamentous cyanobacteria avoiding nitrogen starvation while preserving cell viability

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.28455936.v1
title: Additional file 6 of A novel recombinant PHB production platform in filamentous cyanobacteria avoiding nitrogen starvation while preserving cell viability

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.28455948
title: Additional file 10 of A novel recombinant PHB production platform in filamentous cyanobacteria avoiding nitrogen starvation while preserving cell viability

description: Supplementary Material 10
DOI: 10.6084/m9.figshare.28455948.v1
title: Additional file 10 of A novel recombinant PHB production platform in filamentous cyanobacteria avoiding nitrogen starvation while preserving cell viability

description: Supplementary Material 10
DOI: 10.6084/m9.figshare.28455989
title: Additional file 2 of Identification of key genes controlling anthocyanin biosynthesis in the fruits of a bud variety of Tarocco blood-orange

description: Supplementary Material 2: Table S1-S9
DOI: 10.6084/m9.figshare.28455989.v1
title: Additional file 2 of Identification of key genes controlling anthocyanin biosynthesis in the fruits of a bud variety of Tarocco blood-orange

description: Supplementary Material 2: Table S1-S9
DOI: 10.6084/m9.figshare.28456010
title: Additional file 1 of Interaction of genetic variants and methylation in transcript-level expression regulation in Alzheimer’s disease by multi-omics data analysis

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.28456010.v1
title: Additional file 1 of Interaction of genetic variants and methylation in transcript-level expression regulation in Alzheimer’s disease by multi-omics data analysis

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.28456043
title: Additional file 1 of Whole-genome bisulfite sequencing of cell-free DNA unveils age-dependent and ALS-associated methylation alterations

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.28456053.v1
title: Additional file 2 of Profiling conserved transcription factor binding motifs in Phaseolus vulgaris through comparative genomics

description: Supplementary Material 2: Supplementary Table 1. List of conserved motifs on P. vulgaris v2.1 promoters.
DOI: 10.6084/m9.figshare.28456053
title: Additional file 2 of Profiling conserved transcription factor binding motifs in Phaseolus vulgaris through comparative genomics

description: Supplementary Material 2: Supplementary Table 1. List of conserved motifs on P. vulgaris v2.1 promoters.
DOI: 10.6084/m9.figshare.28456056
title: Additional file 3 of Profiling conserved transcription factor binding motifs in Phaseolus vulgaris through comparative genomics

description: Supplementary Material 3: Supplementary Table 2. List of conserved motifs on P. vulgaris v1.0 promoters.
DOI: 10.6084/m9.figshare.28456056.v1
title: Additional file 3 of Profiling conserved transcription factor binding motifs in Phaseolus vulgaris through comparative genomics

description: Supplementary Material 3: Supplementary Table 2. List of conserved motifs on P. vulgaris v1.0 promoters.
DOI: 10.6084/m9.figshare.28456059
title: Additional file 4 of Profiling conserved transcription factor binding motifs in Phaseolus vulgaris through comparative genomics

description: Supplementary Material 4: Supplementary Table 2. Functional enrichment analysis by species.
DOI: 10.6084/m9.figshare.28456059.v1
title: Additional file 4 of Profiling conserved transcription factor binding motifs in Phaseolus vulgaris through comparative genomics

description: Supplementary Material 4: Supplementary Table 2. Functional enrichment analysis by species.
DOI: 10.6084/m9.figshare.28456062
title: Additional file 5 of Profiling conserved transcription factor binding motifs in Phaseolus vulgaris through comparative genomics

description: Supplementary Material 5: Supplementary Table 3. Enriched functions within genes with conserved motifs by transcription factor families.
DOI: 10.6084/m9.figshare.28456062.v1
title: Additional file 5 of Profiling conserved transcription factor binding motifs in Phaseolus vulgaris through comparative genomics

description: Supplementary Material 5: Supplementary Table 3. Enriched functions within genes with conserved motifs by transcription factor families.
DOI: 10.6084/m9.figshare.28456068
title: Additional file 7 of Profiling conserved transcription factor binding motifs in Phaseolus vulgaris through comparative genomics

description: Supplementary Material 7: Supplementary Table 5. Genetic variants in starch biosynthesis genes.
DOI: 10.6084/m9.figshare.28456068.v1
title: Additional file 7 of Profiling conserved transcription factor binding motifs in Phaseolus vulgaris through comparative genomics

description: Supplementary Material 7: Supplementary Table 5. Genetic variants in starch biosynthesis genes.
DOI: 10.6084/m9.figshare.28456070
title: Additional file 1 of The causal relationships between gut microbiota and venous thromboembolism: a Mendelian randomization study

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.28456070.v1
title: Additional file 1 of The causal relationships between gut microbiota and venous thromboembolism: a Mendelian randomization study

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.28456110
title: Additional file 1 of Ca2+-dependent H2O2 response in roots and leaves of barley - a transcriptomic investigation

description: Supplementary Material 1: Additional File 1: Raw cytoscape output sessions (.cys) of the SKM network analyses in the roots and leaves of barley. Figures 8, 9 and S5 were prepared from the cytoscape files
DOI: 10.6084/m9.figshare.28456110.v1
title: Additional file 1 of Ca2+-dependent H2O2 response in roots and leaves of barley - a transcriptomic investigation

description: Supplementary Material 1: Additional File 1: Raw cytoscape output sessions (.cys) of the SKM network analyses in the roots and leaves of barley. Figures 8, 9 and S5 were prepared from the cytoscape files
DOI: 10.6084/m9.figshare.28456113
title: Additional file 2 of Ca2+-dependent H2O2 response in roots and leaves of barley - a transcriptomic investigation

description: Supplementary Material 2: Additional File 2: Fig. S1 Unique and overlapping DEGs between H2O2 + LaCl3 and LaCl3 treatment alone vs. control treatment. Venn diagram of DEGs (FDR &lt; 0.01) from (A) leaves and (B) roots. Only the unique DEGs from the H2O2 + LaCl3 treatment were used for further analyses. Fig. S2 Determining the number of clusters for Ca2+-dependent H2O2-responsive genes in (A) leaves and (B) roots. Gap statistics analysis was used for the calculation, with a total of 100 iterations. set.seed(123) function was used before running this function to reduce randomness and inconsistencies in the number of clusters generated. The number of clusters predicted by this analysis was used to perform k-means clustering analyses in figure 5. Fig. S3 Validation of RNA-seq results by RT-qPCR. Linear regression analysis between transcript level ratios derived from RNA-seq and RT-qPCR data under different treatments in leaves (A and B) and roots (C and D). C: correlation coefficient, P: P-value, R2: R-regression coefficient. Fig. S4 CKN analysis of H2O2 signaling based on Arabidopsis orthologs of the genes identified in barley. All paths identified in CKN leading from known Ca2+-involved genes (pink-bordered nodes) to Ca2+-dependent H2O2 responsive genes (green nodes), and from known redox-related genes (blue-bordered nodes) to Ca2+-independent H2O2-responsive genes (yellow nodes), obtained by RNA-seq, merged into a single network in (A) leaves and (B) roots. Transcription factors are indicated as orange nodes. Complete networks are provided in additional file 1. Fig. S5 Two potential models for an increased reduction in transcript abundance in the absence of the H2O2-induced Ca2+ transient. This could either occur by a regulation of Ca2+-dependent and -independent pathways, which act in opposite directions with different strength of regulation (left panel). Alternatively, the H2O2-induced Ca2+ signals might attenuate the H2O2 response, so that it becomes stronger in its absence. The arrowheads indicate activation (green) or repression (red)
DOI: 10.6084/m9.figshare.28456113.v1
title: Additional file 2 of Ca2+-dependent H2O2 response in roots and leaves of barley - a transcriptomic investigation

description: Supplementary Material 2: Additional File 2: Fig. S1 Unique and overlapping DEGs between H2O2 + LaCl3 and LaCl3 treatment alone vs. control treatment. Venn diagram of DEGs (FDR &lt; 0.01) from (A) leaves and (B) roots. Only the unique DEGs from the H2O2 + LaCl3 treatment were used for further analyses. Fig. S2 Determining the number of clusters for Ca2+-dependent H2O2-responsive genes in (A) leaves and (B) roots. Gap statistics analysis was used for the calculation, with a total of 100 iterations. set.seed(123) function was used before running this function to reduce randomness and inconsistencies in the number of clusters generated. The number of clusters predicted by this analysis was used to perform k-means clustering analyses in figure 5. Fig. S3 Validation of RNA-seq results by RT-qPCR. Linear regression analysis between transcript level ratios derived from RNA-seq and RT-qPCR data under different treatments in leaves (A and B) and roots (C and D). C: correlation coefficient, P: P-value, R2: R-regression coefficient. Fig. S4 CKN analysis of H2O2 signaling based on Arabidopsis orthologs of the genes identified in barley. All paths identified in CKN leading from known Ca2+-involved genes (pink-bordered nodes) to Ca2+-dependent H2O2 responsive genes (green nodes), and from known redox-related genes (blue-bordered nodes) to Ca2+-independent H2O2-responsive genes (yellow nodes), obtained by RNA-seq, merged into a single network in (A) leaves and (B) roots. Transcription factors are indicated as orange nodes. Complete networks are provided in additional file 1. Fig. S5 Two potential models for an increased reduction in transcript abundance in the absence of the H2O2-induced Ca2+ transient. This could either occur by a regulation of Ca2+-dependent and -independent pathways, which act in opposite directions with different strength of regulation (left panel). Alternatively, the H2O2-induced Ca2+ signals might attenuate the H2O2 response, so that it becomes stronger in its absence. The arrowheads indicate activation (green) or repression (red)
DOI: 10.6084/m9.figshare.28456119
title: Additional file 4 of Ca2+-dependent H2O2 response in roots and leaves of barley - a transcriptomic investigation

description: Supplementary Material 4: Additional File 4: Table S2: Differentially expressed genes (DEGs) between either H2O2+LaCl3 or LaCl3 and control samples. Differential expression analysis was carried out with the genes using DESeq2. Attached here are the output files obtained after comparing LaCl3 +H2O2 treated samples with control samples, in the leaf and the root, along with the DESeq2 output files obtained after comparing LaCl3 treated samples. DEGs were identified based on adjusted FDR &lt; 0.01 and are listed separately for leaves and roots. Further genes with FDR&gt; 0.01, were considered as genes with unchanged expression (UCs) compared to control samples. Furthermore, the genes commonly regulated between H2O2+LaCl3 and LaCl3 treatments were excluded to obtain the genes which are unique for H2O2+LaCl3 treatment and presented separately for leaves and roots of barley
DOI: 10.6084/m9.figshare.28456119.v1
title: Additional file 4 of Ca2+-dependent H2O2 response in roots and leaves of barley - a transcriptomic investigation

description: Supplementary Material 4: Additional File 4: Table S2: Differentially expressed genes (DEGs) between either H2O2+LaCl3 or LaCl3 and control samples. Differential expression analysis was carried out with the genes using DESeq2. Attached here are the output files obtained after comparing LaCl3 +H2O2 treated samples with control samples, in the leaf and the root, along with the DESeq2 output files obtained after comparing LaCl3 treated samples. DEGs were identified based on adjusted FDR &lt; 0.01 and are listed separately for leaves and roots. Further genes with FDR&gt; 0.01, were considered as genes with unchanged expression (UCs) compared to control samples. Furthermore, the genes commonly regulated between H2O2+LaCl3 and LaCl3 treatments were excluded to obtain the genes which are unique for H2O2+LaCl3 treatment and presented separately for leaves and roots of barley
DOI: 10.6084/m9.figshare.28456122
title: Additional file 5 of Ca2+-dependent H2O2 response in roots and leaves of barley - a transcriptomic investigation

description: Supplementary Material 5: Additional File 5: Table S3 A comparison of the obtained unique genes in Leaf H2O2+LaCl3 (Table S2) to leaf H2O2-DEGs obtained in our former study (Bhattacharyya et al 2023). For the shared genes between both treatments a selection based on a log2FC difference (delta log2FC) was performed and only genes showing a delta &gt;1 was considered for further analyses. A clustering of the obtained genes resulted in a total of five clusters. control: ddH2O; UCs: genes with unchanged expression vs control
DOI: 10.6084/m9.figshare.28456122.v1
title: Additional file 5 of Ca2+-dependent H2O2 response in roots and leaves of barley - a transcriptomic investigation

description: Supplementary Material 5: Additional File 5: Table S3 A comparison of the obtained unique genes in Leaf H2O2+LaCl3 (Table S2) to leaf H2O2-DEGs obtained in our former study (Bhattacharyya et al 2023). For the shared genes between both treatments a selection based on a log2FC difference (delta log2FC) was performed and only genes showing a delta &gt;1 was considered for further analyses. A clustering of the obtained genes resulted in a total of five clusters. control: ddH2O; UCs: genes with unchanged expression vs control
DOI: 10.6084/m9.figshare.28456125.v1
title: Additional file 6 of Ca2+-dependent H2O2 response in roots and leaves of barley - a transcriptomic investigation

description: Supplementary Material 6: Additional File 6: Table S4 A comparison of the obtained unique genes in root H2O2+LaCl3 (Table S2) to root H2O2-DEGs obtained in our former study (Bhattacharyya et al 2023). For the shared genes between both treatments a selection based on a log2FC difference (delta log2FC) was performed and only genes showing a delta &gt;1 was considered for further analyses. A clustering of the obtained genes resulted in a total of five clusters. control: ddH2O; UCs: genes with unchanged expression vs control