cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5705200.v1
title: New York Harbor environmental DNA detection of fish, 12 month update

description: Updated dataset for "Aquatic environmental DNA detects seasonal fish abundance and habitat preference in an urban estuary (PLOS ONE 2017 e0175186). <br><br>33 additional water samples (109 total) were collected from August through December 2016, extending the original six-month study to twelve months. <br><br>Samples were analyzed as described in the original study. Briefly, one-liter water samples were filtered through a 0.45μM nylon filter, DNA was isolated using MoBio PowerSoil kit, amplified with broad-range vertebrate 12S primers, indexed with Nextera tags, and submitted to GENEWIZ for 2x150bp MiSeq sequencing. Fastq files were analyzed using DADA2 and unique sequences were submitted to GenBank using BLAST. Sequences matching fish species were selected for further analysis. The complete set of fastq files and associated data are deposited together with original dataset in NCBI Sequence Read Archive under BioProject ID PRJNA358446. New findings include 1) fall decrease in species per sample; 2) seasonal species counts roughly paralleled water temperature in the estuary; and 3) six additional species detected (Fig. 1). The fall decrease in species counts strengthens the original finding, namely, eDNA detectability is coincident with known seasonal movements of fish populations in and out of the lower Hudson estuary. The complete data set further supports eDNA localization within the estuary: nearshore marine species eDNAs were more common in East River (Atlantic silverside, cunner, rock gunnel, scup, seaboard goby), and brackish estuary species eDNAs were more common in the Hudson River (American eel, hogchoker, naked goby) (Fig. 1). At both sites, rarefaction analysis, new to this update, revealed a relatively small proportion of species produced the great majority of eDNA reads (Fig. 2). In particular, about 20% of species accounted for about 90% of reads at both sites; the predominant species differed by site consistent with known habitat preferences.<br> Table 1. Fish amplicon reads by sample. <br>Table 2. Fish 12s amplicon sequences. <br>
DOI: 10.6084/m9.figshare.5705188
title: Fig 3

description: Average number of collaborators per author per year. Data for the article "Characterizing the Field of Atomic Layer Deposition: authors, topics, and collaborations"
DOI: 10.6084/m9.figshare.5705188.v1
title: Fig 3

description: Average number of collaborators per author per year. Data for the article "Characterizing the Field of Atomic Layer Deposition: authors, topics, and collaborations"
DOI: 10.6084/m9.figshare.5705173
title: Fig 2

description: Number of distinct authors who publish aLD research, number of authors who publish ALD research for the first time, and ratio of new and distinct authors.<br>Data for the article "Characterizing the Field of Atomic Layer Deposition: authors, topics, and collaborations"<br>
DOI: 10.6084/m9.figshare.5705167
title: Network of scientific collaborations between New Zealand institutions based on Scopus publications from 2010 to 2015

description: This dataset contains major outputs of a study on collaboration links between all New Zealand universities based on Scopus publications within 2010-2015. For more details about the study, one may refer to<br>Samin Aref, David Friggens, and Shaun Hendy. 2018. Analysing Scientific Collaborations of New Zealand Institutions using Scopus Bibliometric Data. In <i>Proceedings of ACSW 2018: Australasian Computer Science Week 2018, January 29-February 2, 2018, Brisbane, QLD, Australia</i>, 10 pages. https://doi.org/10.1145/3167918.3167920<br>The number of collaboration records of 15 New Zealand universities and crown research institutes (government-funded research centres) are categorised based on the type of collaborator (business enterprise, government, higher education, and private not-for-profit) and the subject of publication venue and provided as a CSV file.<br><br>New Zealand scientific collaboration network is provided in 3 formats: .gephi, .graphml, and an edge list in .csv format<br><br>7 Induced subgraphs of the network are also provided. Each induced subgraph (ego network) represents the collaborators network of a crown research institute. Two formats are provided: .gephi and .graphml.<br>Please cite the research paper (doi: 10.1145/3167918.3167920) as well as this Figshare dataset (doi 10.6084/m9.figshare.5705167) when using the data.<br>ACKNOWLEDGMENTSAndrew Marriott and Sam Holmes at Ministry of Business Innovation & Employment (MBIE) performed much of the work classifying New Zealand institutions. The first author would like to thank Peter Ellis and Franz Smith for their support.<br>
DOI: 10.6084/m9.figshare.5705146
title: Fig 1

description: Number of papers and journals that publish ALD research, and percentage among SCIE papers and journals. Data for the article "Characterizing the Field of Atomic Layer Deposition: authors, topics, and collaborations"
DOI: 10.6084/m9.figshare.5702818
title: R code for analysis

description: R code for our analysis
DOI: 10.6084/m9.figshare.5702818.v1
title: R code for analysis

description: R code for our analysis
DOI: 10.6084/m9.figshare.5702812
title: Data from: Geographical and experimental context modulate the effect of warming on top-down control: a meta-analysis

description: This file contains all the data used to generate the results presented in the paper "Geographical and experimental context modulate the effect of warming on top-down control: a meta-analysis". Please, refer to the main manuscript and to the README file for further details on the data analyses and the contents of this file.
DOI: 10.6084/m9.figshare.5702812.v1
title: Data from: Geographical and experimental context modulate the effect of warming on top-down control: a meta-analysis.csv

description: This file contains all the data used to generate the results presented in the paper "Geographical and experimental context modulate the effect of warming on top-down control: a meta-analysis". Please, refer to the main manuscript and to the README file for further details on the data analyses and the contents of this file.
DOI: 10.6084/m9.figshare.5702779
title: Raw data 2013 and 2014

description: This is the hematology, biochemistry, and toxicology data for Pacific hawksbill sea turtles in El Salvador.
DOI: 10.6084/m9.figshare.5702779.v1
title: Raw data 2013 and 2014

description: This is the hematology, biochemistry, and toxicology data for Pacific hawksbill sea turtles in El Salvador.
DOI: 10.6084/m9.figshare.5702776
title: Supplementary Info

description: Supplementary Information for our paper "Real-time search of all bacterial and viral genomic data"<br><br>https://www.biorxiv.org/content/early/2017/12/15/234955<br>
DOI: 10.6084/m9.figshare.5702764
title: Effect of trap type and height in monitoring the orange wheat blossom midge, Sitodiplosis mosellana (Géhin) (Diptera: Cecidomyiidae) and its parasitoid, Macroglenes penetrans (Kirby) (Hymenoptera: Pteromalidae)

description: Raw data and statistical analyses for the following paper : <br><br>Chavalle S., Censier F., San Martin y Gomez G., De Proft M. (2018) Effect of trap type and height in monitoring the orange wheat blossom midge, Sitodiplosis mosellana (Géhin) (Diptera: Cecidomyiidae) and its parasitoid, Macroglenes penetrans (Kirby) (Hymenoptera: Pteromalidae). Crop Protection. https://doi.org/10.1016/j.cropro.2018.10.010<br><br><br>The orange wheat blossom midge, Sitodiplosis mosellana (Géhin) (Diptera: Cecidomyiidae), is a common pest of<br>wheat that is frequently parasitized by Macroglenes penetrans (Kirby) (Hymenoptera: Pteromalidae). Both species need to be detected and quantified using a reliable monitoring system to assess the risk for wheat crops and, if necessary, determine the timing of insecticide treatments in order to ensure their efficiency against the pest and prevent adverse side-effects on beneficial insects. Four trap types, placed at 0.6 m above ground level, were compared for their efficiency in catching S. mosellana and M. penetrans: yellow sticky traps, white sticky traps, yellow water traps and pheromone-baited traps. For the pheromone-baited and yellow water traps, three heights (0.2, 0.6 and 1 m above ground level) were tested. For S. mosellana, the pheromone-baited trap was the most efficient and 0.2 m was the best height. In non-source fields with important flights of immigrant female midges, however, yellow water traps could be more efficient than pheromone-baited traps, capturing males almost exclusively. For<br>M. penetrans, the most efficient traps were the sticky and yellow water traps and the best height was 0.6 m. These relative efficiencies of traps and height positions were clearly related to differences in flight behavior between the species and between the sexes.<br>
DOI: 10.6084/m9.figshare.5702740
title: Materials database of Curie and Néel magnetic phase transition temperatures

description: Materials database of Curie and Néel magnetic phase transition temperatures. Each record contains a field indicating the type of phase transition (Curie or Néel), a compound or label, extracted and normalised values and units, the article title, journal, DOI, and authors of the source article. Furthermore, if the record was retrieved using the modified Snowball quaternary relationship extraction stage, the record contains the associated confidence score. The database can be downloaded in MongoDB, CSV or JSON formats.
DOI: 10.6084/m9.figshare.5702722
title: 0.4 offset explosion in a 1.5 polytrope

description: 0.4 offset explosion in a 1.5 polytrope
DOI: 10.6084/m9.figshare.5702722.v1
title: 0.4 offset explosion in a 1.5 polytrope

description: 0.4 offset explosion in a 1.5 polytrope
DOI: 10.6084/m9.figshare.5702671
title: 0.3 offset explosion in a 1.5 polytrope

description: 0.3 offset explosion in a 1.5 polytrope
DOI: 10.6084/m9.figshare.5702671.v1
title: 0.3 offset explosion in a 1.5 polytrope

description: 0.3 offset explosion in a 1.5 polytrope
DOI: 10.6084/m9.figshare.5702641
title: 0.2 offset explosion in a 1.5 polytrope

description: Offset explosion 0.2 in a 1.5 polytrope
DOI: 10.6084/m9.figshare.5702641.v2
title: 0.2 offset explosion in a 1.5 polytrope

description: Offset explosion 0.2 in a 1.5 polytrope
DOI: 10.6084/m9.figshare.5702641.v1
title: Offset explosion 0.2 in a 1.5 polytrope

description: Offset explosion 0.2 in a 1.5 polytrope
DOI: 10.6084/m9.figshare.5702620
title: Simulation of interior gravity and higher impact velocity

description: Simulation of interior gravity and higher impact velocity
DOI: 10.6084/m9.figshare.5702620.v1
title: Simulation of interior gravity and higher impact velocity

description: Simulation of interior gravity and higher impact velocity
DOI: 10.6084/m9.figshare.5702452
title: ICT4D 2017 survey RAW results

description: Survey results of the evaluation of the Voice-Service Development Kit during the VUA ICT4D course 2017.
DOI: 10.6084/m9.figshare.5702452.v1
title: ICT4D 2017 survey RAW results

description: Survey results of the evaluation of the Voice-Service Development Kit during the VUA ICT4D course 2017.
DOI: 10.6084/m9.figshare.5702428
title: Recurrent origin of peripheral, coastal (sub)species in Mediterranean <i>Senecio</i> (Asteraceae)

description: <b><i>Background</i></b>: It is argued that coastal endemic taxa may evolve in parallel at the periphery of the distributional range of a widespread species. <b><i>Aims</i></b>: We tested this hypothesis for the origins of three peripheral, coastal isolates of <i>Senecio, S. glaucus</i> ssp. <i>glaucus</i> (Israel), <i>S. g</i>. ssp. <i>coronopifolius</i> p.p. (Sicily), and <i>S. hesperidium</i> (Morocco), from widespread <i>S. glaucus</i> ssp. <i>coronopifolius</i>. We also determined the relative roles of selection vs. genetic drift in shaping phenotypic divergence in ssp. <i>glaucus</i> and <i>S. hesperidium</i>, using Lande’s test of neutral morphological change. <b><i>Methods</i></b>: We surveyed morphological and/or allozyme variation in the three peripheral isolates and mainly inland populations of <i>S. g</i>. ssp. <i>coronopifolius.</i> <b><i>Results</i></b>: Genetic data supported independent origins of the coastal taxa from nearby populations of ssp. <i>coronopifolius</i>. These descendant and ancestral populations showed pronounced morphological but weak genetic differentiation. Phenotypic similarities between ssp. <i>glaucus</i> (Israel) and <i>S. hesperidium</i> (Morocco) in plant height and floral traits may have resulted from parallel divergent selection from ssp. <i>coronopifolius</i>, though drift remains an alternative cause in <i>S. hesperidium</i>. <b><i>Conclusions</i></b>: Our results indicate parallel ecotype formation and (sub)speciation in <i>Senecio</i> in which primarily selective vs. neutral determinants promoted the recurrent origin of coastal types in, respectively, Israel and Morocco.
DOI: 10.6084/m9.figshare.5702428.v2
title: Recurrent origin of peripheral, coastal (sub)species in Mediterranean <i>Senecio</i> (Asteraceae)

description: <b><i>Background</i></b>: It is argued that coastal endemic taxa may evolve in parallel at the periphery of the distributional range of a widespread species. <b><i>Aims</i></b>: We tested this hypothesis for the origins of three peripheral, coastal isolates of <i>Senecio, S. glaucus</i> ssp. <i>glaucus</i> (Israel), <i>S. g</i>. ssp. <i>coronopifolius</i> p.p. (Sicily), and <i>S. hesperidium</i> (Morocco), from widespread <i>S. glaucus</i> ssp. <i>coronopifolius</i>. We also determined the relative roles of selection vs. genetic drift in shaping phenotypic divergence in ssp. <i>glaucus</i> and <i>S. hesperidium</i>, using Lande’s test of neutral morphological change. <b><i>Methods</i></b>: We surveyed morphological and/or allozyme variation in the three peripheral isolates and mainly inland populations of <i>S. g</i>. ssp. <i>coronopifolius.</i> <b><i>Results</i></b>: Genetic data supported independent origins of the coastal taxa from nearby populations of ssp. <i>coronopifolius</i>. These descendant and ancestral populations showed pronounced morphological but weak genetic differentiation. Phenotypic similarities between ssp. <i>glaucus</i> (Israel) and <i>S. hesperidium</i> (Morocco) in plant height and floral traits may have resulted from parallel divergent selection from ssp. <i>coronopifolius</i>, though drift remains an alternative cause in <i>S. hesperidium</i>. <b><i>Conclusions</i></b>: Our results indicate parallel ecotype formation and (sub)speciation in <i>Senecio</i> in which primarily selective vs. neutral determinants promoted the recurrent origin of coastal types in, respectively, Israel and Morocco.
DOI: 10.6084/m9.figshare.5702368
title: MOESM3 of The effect of temperature and retention time on methane production and microbial community composition in staged anaerobic digesters fed with food waste

description: Additional file 3: Spreadsheet S1. Reactor process metadata corresponding to all microbiological sampling timepoints. Note that these values are point measurements and span a range of timepoints distinct from those in TableÂ 2.
DOI: 10.6084/m9.figshare.5702368.v1
title: MOESM3 of The effect of temperature and retention time on methane production and microbial community composition in staged anaerobic digesters fed with food waste

description: Additional file 3: Spreadsheet S1. Reactor process metadata corresponding to all microbiological sampling timepoints. Note that these values are point measurements and span a range of timepoints distinct from those in TableÂ 2.
DOI: 10.6084/m9.figshare.5702281
title: Supplementary Material for: Analysis of the Cariogenic Potential of Various Almond Milk Beverages using a Streptococcus mutans Biofilm Model in vitro

description: To evaluate the cariogenic properties of almond milk beverages, 6 almond milks, along with soy and whole bovine milk, were analyzed for their abilities to support <i>Streptococcus mutans </i>biofilm formation and acid production, and their capacity to buffer changes in pH. Biofilm formation by <i>S. mutans</i> was analyzed using an in vitro 96-well plate model and measured by crystal violet staining. Acid production by <i>S. mutans</i> was evaluated by a colorimetric L-lactate assay and pH measurement of bacterial cultures. Buffering capacity was assessed by a pH titration assay. Soy milk supported the most biofilm growth, while the least was observed with unsweetened almond milk (both <i>p </i>&lt; 0.001). Among almond milks, sucrose-sweetened milk led to the highest level of biofilm formation (<i>p </i>&lt; 0.001), while the least was observed with unsweetened milk (<i>p </i>&lt; 0.05). Sucrose-sweetened almond milk yielded the lowest pH (4.56 ± 0.66), followed by soy milk and bovine milk; the highest pH was with unsweetened almond milk (6.48 ± 0.5). When analyzed by pH titration, the unsweetened almond milk displayed the weakest buffering capacity while bovine milk showed the highest (<i>p </i>&lt; 0.001). These results suggest that the almond milk beverages, except those that are sweetened with sucrose, possess limited cariogenic properties, while soy milk exhibits the most cariogenic potential. As milk alternatives become increasingly popular, dentists must counsel their patients that almond milks, especially sucrose-sweetened varieties, have cariogenic potential. For patients who are lactose-intolerant or suffer from milk allergy, almond milks may be a better alternative than soy-based products.
DOI: 10.6084/m9.figshare.5702281.v1
title: Supplementary Material for: Analysis of the Cariogenic Potential of Various Almond Milk Beverages using a Streptococcus mutans Biofilm Model in vitro

description: To evaluate the cariogenic properties of almond milk beverages, 6 almond milks, along with soy and whole bovine milk, were analyzed for their abilities to support <i>Streptococcus mutans </i>biofilm formation and acid production, and their capacity to buffer changes in pH. Biofilm formation by <i>S. mutans</i> was analyzed using an in vitro 96-well plate model and measured by crystal violet staining. Acid production by <i>S. mutans</i> was evaluated by a colorimetric L-lactate assay and pH measurement of bacterial cultures. Buffering capacity was assessed by a pH titration assay. Soy milk supported the most biofilm growth, while the least was observed with unsweetened almond milk (both <i>p </i>&lt; 0.001). Among almond milks, sucrose-sweetened milk led to the highest level of biofilm formation (<i>p </i>&lt; 0.001), while the least was observed with unsweetened milk (<i>p </i>&lt; 0.05). Sucrose-sweetened almond milk yielded the lowest pH (4.56 ± 0.66), followed by soy milk and bovine milk; the highest pH was with unsweetened almond milk (6.48 ± 0.5). When analyzed by pH titration, the unsweetened almond milk displayed the weakest buffering capacity while bovine milk showed the highest (<i>p </i>&lt; 0.001). These results suggest that the almond milk beverages, except those that are sweetened with sucrose, possess limited cariogenic properties, while soy milk exhibits the most cariogenic potential. As milk alternatives become increasingly popular, dentists must counsel their patients that almond milks, especially sucrose-sweetened varieties, have cariogenic potential. For patients who are lactose-intolerant or suffer from milk allergy, almond milks may be a better alternative than soy-based products.
DOI: 10.6084/m9.figshare.5702275
title: Omega-3 and aggression study

description: Begue, L., Zaalberg, A., Shankland, R., Duke, A., Jacquet, J., Kaliman, P., Pennel, L., Chanove, M., Arvers, P., & Bushman, B. J. (in press). Omega-3 supplements reduce self-reported physical aggression in healthy adults.<b> </b><i>Psychiatry Research</i>.
DOI: 10.6084/m9.figshare.5702275.v1
title: Omega-3 and aggression study

description: Begue, L., Zaalberg, A., Shankland, R., Duke, A., Jacquet, J., Kaliman, P., Pennel, L., Chanove, M., Arvers, P., & Bushman, B. J. (in press). Omega-3 supplements reduce self-reported physical aggression in healthy adults.<b> </b><i>Psychiatry Research</i>.
DOI: 10.6084/m9.figshare.5702212
title: Trained models

description: ANNs ensamble saved in pmml format (cross-platform compatible, one model for each repetition-variable) and rds (R list of 20 repetitions of trained ANNs from the "nnet" package, one list per variable). CSV file containing the transformation parameters applied to the covariates (box-cox and standardization).
DOI: 10.6084/m9.figshare.5702212.v1
title: Trained models

description: ANNs ensamble saved in pmml format (cross-platform compatible, one model for each repetition-variable) and rds (R list of 20 repetitions of trained ANNs from the "nnet" package, one list per variable). CSV file containing the transformation parameters applied to the covariates (box-cox and standardization).
DOI: 10.6084/m9.figshare.5702209
title: Supplementary Material for: Kombinierte Anwendung von Strahlentherapie und adjuvanter Therapie mit einem Mistelextrakt (Viscum album L.) zur Behandlung des oralen malignen Melanoms beim Hund: Eine retrospektive Studie

description: Hintergrund: Orale maligne Melanome (OMM) des Hundes zeichnen sich durch schnelles Wachstum, lokale Invasion und hohe Metastasierungsraten aus. Extrakte auf Basis von Viscum Album L. (VAE) werden zunehmend in der Krebstherapie sowohl in der Human- als auch in der Veterinärmedizin eingesetzt. Ziel unserer Studie war es zu untersuchen, inwieweit die adjuvante Therapie mit VAE eine therapeutische Option zur Behandlung von OMM ist. Besonderes Augenmerk galt dabei der Überlebenszeit und möglichen Nebenwirkungen. Tiere und Methoden: 26 Hunde mit OMM, die in einem der größten veterinäronkologischen Zentren der Schweiz allesamt eine Strahlentherapie erhielten (teilweise nach operativer Tumorresektion) wurden in die retrospektive Studie eingeschlossen: 18 Hunde wurden mit VAE behandelt (1 ml VAE (Iscador®) in ansteigenden Konzentrationen von 0,1 bis 20 mg/ml subkutan 3-mal pro Woche (VAE-Gruppe), 8 erhielten keine adjuvante Behandlung (Vergleichsgruppe). Wir verglichen die Größenentwicklung der OMM sowie die Überlebenszeit. Ergebnisse: Patienten mit Bestrahlung und adjuvanter VAE-Therapie zeigten mit 236 Tagen eine signifikant längere mediane Überlebenszeit im Vergleich zu Patienten mit Bestrahlung, aber ohne adjuvante VAE-Therapie (49 Tage; Log-Rank-Test: p = 0,0047). Die VAE-Therapie verlängerte die Überlebenszeit um mehr als zwei Drittel (Hazard Ratio (HR) = 0,30, 95%-Konfidenzintervall (KI) 0,11–0,86; p = 0,024), während ein höheres Tumorstadium gemäß UICC (Union internationale contre le cancer) einen statistischen Trend zur Verdopplung des Sterberisikos zeigte (UICC-Stadium III/IV vs. I/II: HR = 2,12, 95%-KI 0,88 5,12; p = 0,095). Zwei Patienten zeigten milde Nebenwirkungen während der VAE-Behandlung. Einer der beiden zeigte 1 Tag lang ein selbstlimitiertes Fieber, bei dem anderen Patienten reduzierten wir die Dosis von einem konzentrierteren zu einem weniger konzentrierten VAE (Serie 0) aufgrund von Müdigkeit, die daraufhin verschwand. Schlussfolgerungen: VAE ist eine sichere, nebenwirkungsarme Behandlung und scheint sich positiv auf die Überlebenszeit von Hunden mit OMM auszuwirken. Somit ist dieser therapeutische Ansatz es wert, vermehrt bei der adjuvant zur Strahlentherapie eingesetzten Behandlung des OMM in Betracht gezogen zu werden. Die verglichenen Gruppen waren jedoch klein, divers und nicht konsistent hinsichtlich aller prognostischen Parameter. Eine prospektive Studie mit einer größeren Studienpopulation wäre daher von Interesse.
DOI: 10.6084/m9.figshare.5702206
title: FLO1K UPSCALED 30min - TS 1960-2015

description: FLO1K time series upscaled to 30 arc minutes in NetCDF-4 CF-compliant format.
DOI: 10.6084/m9.figshare.5702206.v1
title: FLO1K UPSCALED 30min - TS 1960-2015

description: FLO1K time series upscaled to 30 arc minutes in NetCDF-4 CF-compliant format.
DOI: 10.6084/m9.figshare.5702203
title: FLO1K UPSCALED 5min - TS 1960-2015

description: FLO1K time series upscaled to 5 arc minutes in NetCDF-4 CF-compliant format.