cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.2qt77/2
title: Online Supplementary Material

description: Contains instructions on how to use the Perl script for computing ADD and PADD distances. It also contains additional results in the form of 10 supplementary tables and 8 supplementary figures.
DOI: 10.5061/dryad.2qt77/3
title: perl script for calculating ADD and PADD

description: See the online supplementary material for instructions on use of this script.
DOI: 10.5061/dryad.2qt77/4
title: Provenance information for Adnataria
DOI: 10.5061/dryad.2qt77/5
title: Adnataria case study

description: This nexus file contains both the data matrix and the resulting trees for the Adnataria case study.
DOI: 10.5061/dryad.2qt77/6
title: Eucalyptus case study

description: This nexus file contains the data matrix and resulting tree for the Eucalyptus case study.
DOI: 10.5061/dryad.2qt77/7
title: Gene presence/absence case study

description: This nexus file contains the data matrix and resulting tree for the gene presence/absence case study based on the COG database.
DOI: 10.5061/dryad.37mm8/2
title: 477genotypesSirexnoctilio_Boissin et al. ME_FINAL

description: Genotypes of the 477 S. noxtilio specimens used in the study with the corresponding mt DNA haplotypes
DOI: 10.5061/dryad.37mm8/3
title: Snoc_50spe-longFrag_Boissin et al ME2012

description: Alignment of the 50 mtDNA sequences for the long COI fragment (844bp)
DOI: 10.5061/dryad.37mm8/4
title: Snoc_113spe-shortFrag_Boissin et al ME2012

description: Alignment of the 113 mtDNA sequences for the short COI fragment (444 bp)
DOI: 10.5061/dryad.6jj614kh/10
title: Hoggan H5 geno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/3
title: Cranby E5 pheno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/4
title: Cranby E5 geno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/5
title: Cranby E6 pheno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/6
title: Cranby E6 geno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/7
title: Cranby E10 pheno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/8
title: Cranby E10 geno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/9
title: Hoggan H5 pheno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.rr0tb/2
title: Genotypes of Kentish plovers

description: Sample information including Geographic location, Sex and Microsatellite genotypes of 21 loci of 360 and Genbank Accessionsnumbers of 245 Kentish plovers collected in the field.
DOI: 10.5061/dryad.16b00/1
title: Final DNA sequence assembled
DOI: 10.5061/dryad.16b00/2
title: AFLP matrix
DOI: 10.5061/dryad.16b00/3
title: Morphological data
DOI: 10.5061/dryad.16b00/4
title: Ecological data
DOI: 10.5061/dryad.274b1/2
title: Census sizes of Alpine ibex demes in the Swiss Alps

description: This file contains census population sizes of Alpine ibex in the Swiss Alps from 1906 to 2007.
DOI: 10.5061/dryad.274b1/3
title: Transfer by humans of Alpine ibex

description: This file contains numbers of male and female Alpine ibex transferred by humans between demes during the process of reintroduction into the Swiss Alps. The entries cover the time between 1906 and 1993.
DOI: 10.5061/dryad.6c7v5/1
title: Reticulitermes_flavipes_microsatellite_genotypes

description: Microsatellite genotypes of Reticulitermes flavipes colonies from 6 populations in the eastern U.S.
DOI: 10.5061/dryad.6jj614kh/11
title: Hoggan H7 pheno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/12
title: Hoggan H17 pheno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/13
title: Hoggan H17 geno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/14
title: Hoggan H19 pheno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/15
title: Hoggan H19 geno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/16
title: Graham 1 pheno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/17
title: Graham 1 geno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/18
title: Graham 2 pheno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/19
title: Graham 2 geno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/20
title: Graham 10 pheno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.n5d5t/1
title: 1- All cytb
DOI: 10.5061/dryad.n5d5t/2
title: 2- cytb haplotypes

description: Alignment of all cytochrome b haplotypes used in the study.
DOI: 10.5061/dryad.n5d5t/3
title: 3- cytb for calibration

description: Cytochrome b alignment used for calibration.
DOI: 10.5061/dryad.n5d5t/4
title: 4- 12S for calibration
DOI: 10.5061/dryad.n5d5t/5
title: 5- LDA12D for calibration

description: Alignment of LDA12D for calibration.
DOI: 10.5061/dryad.n5d5t/6
title: 6- 12S tree MB

description: 12s gene tree recovered using Mr Bayes program.
DOI: 10.5061/dryad.n5d5t/7
title: 7- arbolito LDA12D MB

description: LDA12D gene tree recovered using Mr Bayes program
DOI: 10.5061/dryad.ns23j/1
title: ParboreaMtHaplotypes_16S_COI_ND3_ND2_MSH1_ND6_int

description: Paragorgia arborea mt haplotypes. Concatenated genes 16S_COI_ND3_ND2_MSH1_ND6
DOI: 10.5061/dryad.415sg/1
title: DATA-EHE-2012

description: See "README.txt" file for details
DOI: 10.5061/dryad.47sd5/1
title: Extracted information from AFLP studies
DOI: 10.5061/dryad.5747c/1
title: Seppa et al_dryad data

description: Genotypes of individual workers collected in the field + spatial coordinates of their nests. See the ReadMe file
DOI: 10.5061/dryad.6c7v5/2
title: Reticulitermes_grassei_microsatellite_genotypes

description: Microsatellite genotypes of Reticulitermes grassei colonies from three population in Spain
DOI: 10.5061/dryad.6c7v5/3
title: Regression_analysis_spreadsheet

description: Data used in the regression analysis of the effects of bioclimatic variables on colony breeding structure and levels of inbreeding in Reticulitermes flavipes and R. grassei
DOI: 10.5061/dryad.6jj614kh/21
title: Graham 10 geno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/22
title: Graham 11 pheno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/23
title: Graham 11 geno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/24
title: Paq A3 pheno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/25
title: Paq A3 geno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/26
title: Paq A5 pheno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/27
title: Paq A5 geno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/28
title: Paq A7 pheno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.72242/1
title: 1625Adult genotypes by year01-10

description: Adult data captured in 10 years (2001-2010). Each year data include passive integrated transponder (PIT) tags, annual adult ID, sampling date, and genotypes based on 12 microsatelitte loci.
DOI: 10.5061/dryad.72242/2
title: 2001offspringgenotypes

description: Data include ID and 12 microsatelitte loci genotypes of juveniles collected in 2001. BLJ1-, BLJ2-, and BLJ3- represent juveniles collected at Black Lake in the first, second and third runs, repsectively.
DOI: 10.5061/dryad.72242/3
title: 2002offspringgenotypes

description: Data include ID (BLJ) and 12 microsatelitte loci genotypes of juveniles collected in 2002.
DOI: 10.5061/dryad.72242/4
title: 2003offspringgenotypes

description: Data include ID and 12 microsatelitte loci genotypes of juveniles collected in 2003. IDs were marked as BLJ-, DF-, and DM-. BLJs represent juveniles that were collected during their drifting downstream at Upper Black Lake river, DF- and DM- live and dead juveniles that were collected and reared in a streamside hatchery for three months before being released to the river.
DOI: 10.5061/dryad.72242/5
title: 2004offspringgenotypes

description: Data include ID and 12 microsatelitte loci genotypes of juveniles collected in 2004. IDs were marked as DF-, and DM- which represent live and dead juveniles, respecitively, which were collected and reared in a streamside hatchery for three months before being released to the river.
DOI: 10.5061/dryad.hj2fk/2
title: Matocq_MEC-12-0389_fig01_data
DOI: 10.5061/dryad.hj2fk/3
title: Matocq_Kelly_Phillips_Maldonado_2012

description: Locality, individual, sequence and microsatellite dataset
DOI: 10.5061/dryad.j2448/1
title: GSD_RAD_SNPs

description: GSD_RAD_SNPs contains SNP data, formatted as codominant nucleotide genotypes (e.g. "AT", "CC" etc.) and with missing data marked as "-"). The first two columns give the reference contig where each SNP aligned and its position. The final column gives Nei's Fst between the dune and non-dune ecotypes, estimated by the 'basic.stats' function in the HIERFSTAT package of the R statistical software. The data are sorted on this column. The data columns are as follows: 50 dune individuals, 15 intermediate, 35 non-dune, 10 H. petiolaris and 10 H. annuus.
DOI: 10.5061/dryad.j2448/2
title: gsd_rad_structure_data

description: Zip file containing files used for STRUCTURE analyses presented in Figures 4, S1, S2, S3 and S4.
DOI: 10.5061/dryad.j2448/3
title: gsd75_sample100_3

description: Data file for IMa2 analysis.
DOI: 10.5061/dryad.ns23j/2
title: ParboreaITS2Haplotypes
DOI: 10.12751/g-node.3lbd0c
title: Analysis of a reward prediction error signal in ventral pallidum

description: This data and code accompanies our manuscript "A quantitative reward prediction error in ventral pallidum" which will be published in Nature Neuroscience and an earlier version of which is available on bioRxiv. It contains single unit, extracellular electrophysiological data from nucleus accumbens and ventral pallidum in rats performing reward-seeking tasks for sucrose, maltodextrin, and water. The analysis here focuses on the outcome-evoked signaling and uses an outcome-history based modeling approach to characterize reward prediction error signaling in individual neurons.
description: IsSupplementTo: Ottenheimer, David J., Bilal A. Bari, Elissa Sutlief, Kurt M. Fraser, Tabitha H. Kim, Jocelyn M. Richard, Jeremiah Y. Cohen, and Patricia H. Janak. 'A history-derived reward prediction error signal in ventral pallidum.' bioRxiv (2019): 807842. (doi:10.1101/807842)
description: IsSupplementTo: Ottenheimer, David J., Bilal A. Bari, Elissa Sutlief, Kurt M. Fraser, Tabitha H. Kim, Jocelyn M. Richard, Jeremiah Y. Cohen, and Patricia H. Janak. 'A history-derived reward prediction error signal in ventral pallidum.' Nature Neuroscience (2020). ()
DOI: 10.5061/dryad.10453/1
title: Kulpa Leger Evol Apps Data

description: See Readme file
DOI: 10.5061/dryad.1c1m4qc6/1
title: Chromosome numbers and genome sizes in Carex

description: Tab-delimted table of diploid chromosome numbers and 1C DNA content (in picograms DNA) for 87 taxa of Carex subgenus Vignea. Chromosome numbers are from literature reports and meiotic observations. DNA content is by flow cytometry. Details on the data sources are provided in the paper associated with this dataset.
DOI: 10.5061/dryad.1c1m4qc6/2
title: BEAST XML file for relaxed clock MCMC analysis

description: Trees utilized in this study (a subsample of these trees is included in this submission as a separate data file) were estimated using BEAST v1.5.4. This file is Beast-compliant XML generated in BEAUTi.
DOI: 10.5061/dryad.2fv7033c/1
title: rdbr_19ssr_586ind
DOI: 10.5061/dryad.415sg/2
title: EHEdata

description: See "README.txt" file for details
DOI: 10.5061/dryad.415sg/3
title: EHE

description: See "README.txt" file for details
DOI: 10.5061/dryad.578hr/1
title: SNP calls for all T. californicus individuals genotyped.

description: SNP genotypes for all T. californicus individuals analyzed in the associated study. Genotyping was performed using iPLEX Gold on a MassARRAY Compact (Sequenom). SNPs (prefix TC) are arranged in map order by linkage group (12 chromosomes plus mitochondrion). 'Month 0' indicates individuals collected from pure founder populations immediately prior to the establishment of experimental swarms. Abbreviations are: f: female; m: male; na: not applicable; nc: no call, an unambiguous genotype was not obtained for this individual at this SNP.
DOI: 10.5061/dryad.578hr/2
title: Mean hybrid indices and cytonuclear mismatch for all simulated populations

description: See Readme.txt
DOI: 10.5061/dryad.6305t/1
title: Nexus File
DOI: 10.5061/dryad.6jj614kh/29
title: Paq A7 geno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/30
title: Paq A10 pheno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/31
title: Paq A10 geno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/32
title: NHG wild genotypes

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.6jj614kh/33
title: Hoggan H7 geno

description: Microsatellite allele sizes are always presented as "smaller,larger" so that a 5 digit entry can be decoded as smaller=first 2 digits, larger=last 3 digits. A "0" or blank means data are missing. A 3-digit entry refers to a homozygote. For sex, a "1" refers to male while a "0" refers to female.
DOI: 10.5061/dryad.70m919n6/1
title: caesiella_alignments

description: This is a zipped folder containing: 1) the original alignment prior to analyses, 2) the input file for MP (Paup) analyses with recoded ambiguously aligned regions and step matrices, 3) the input file for ML (Paup) analyses, 4) the input file for ML (RAxML) with ambiguously aligned regions recorded, 5) the input file for BI (MrBayes) analyses.
DOI: 10.5061/dryad.72242/6
title: 2005offspringgenotypes

description: Data include ID and 12 microsatelitte loci genotypes of juveniles collected in 2005. IDs were marked as BDF-, BDM-, WDF-, and WDM-. DF and DM represent live and dead juveniles, respecitively, which were collected and reared in streamside hatcheries (B: Black Lake hatchery; W: Wolf Lake hatchery) for three months before being released to the river.
DOI: 10.5061/dryad.72242/7
title: 2006offspringgenotypes

description: Data include ID and 12 microsatelitte loci genotypes of juveniles collected in 2006. IDs were marked as BDF-, BDM-, WDF-, WDM-, DF-, and DM-. DF and DM represent live and dead juveniles, respecitively. B and W represent streamside Black Lake and Wolf Lake hatcheries where juveniles were reared for three months before being released to the river. DF-, and DM- without B or D are live and dead juveniles that were collected during their drifting downstream at Upper Black Lake river.
DOI: 10.5061/dryad.72242/8
title: 2007offspringgenotypes

description: Data include ID and 12 microsatelitte loci genotypes of juveniles collected in 2007. IDs were marked as DF-, and DM- which represent live and dead juveniles, respecitively, which were collected and reared in a streamside hatchery (Black Lake hatchery) for three months before being released to the river.
DOI: 10.5061/dryad.g0164d60/1
title: normandinoides_data_files

description: This is a .zip folder containing three DNA sequence alignments in nexus format. The MP and ML files were input into PAUP and the BI file into MrBayes. For further details refer to the methods section of the publication.
DOI: 10.5061/dryad.hd412/1
title: Code for numerical iteration and simulation of the model
DOI: 10.5061/dryad.s4sh6/1
title: Dicamptodon copei microsatellite genotype data

description: Dicamptodon copei tissue samples were collected from the field in 2006-2008. DNA was extracted using DNeasy tissue kits (Qiagen) according to the manufacturer’s protocols. Eleven microsatellite loci were amplified using PCR with fluorescently labeled primers, using PCR conditions from Steele et al. (2008) (Table S1, Supporting Information).  Microsatellite products were run on an ABI 3730XL automated sequencer (Applied Biosystems) at the Washington State University LBB1 core facility and genotyped using ABI GENEMAPPER 3.7 software. The data include microsatellite fragment lengths for each study site (rows) and (diploid) locus (columns).