cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21922365
title: Deep sequencing results for htFuncLib libraries of GFP

description: Deep sequencing results for unsorted and sorted samples of active site mutations focused libraries of GFP. The file contains fastq files separated by samples. Each sample has pair-end reads. Samples are: 10_n_x_any_GFP: nohbonds library sorted for GFP fluorescence. 14_w_x_GFP_GFP: hbonds library sorted for GFP fluorescence. 18_w_x_any_any: ignore. 21_n_old_GFP_Cy: ignore. 25_w_O_unsorted: hbonds library, unsorted. 4_n_O_Cyan_Cyan: nohbonds library sorted for AmCyan fluorescence. 8_n_x_Cyan_GFP: nohbonds library sorted for GFP fluorescence. 11_n_x_any_any: ignore. 15_w_x_Cyan_GFP: hbonds library sorted for GFP fluorescence. 19_n_old_GFP: ignore. 22_n_old_Cyan: ignore. 26_w_X_unsorted: hbonds library, unsorted. 5_n_O_any_any: ignore. 9_n_x_Cyan_Cyan: nohbonds library sorted for AmCyan fluorescence. 12_w_O_GFP_GFP: hbonds library sorted for GFP fluorescence. 16_w_1_CyanCyan: hbonds library sorted for AmCyan fluorescence. 1_n_O_GFP_GFP: nohbonds library sorted for GFP fluorescence. 23_n_O_unsorted: nohbonds library, unsorted. 2_n_O_GFP_Cyan: nohbonds library sorted for AmCyan fluorescence. 6_n_x_GFP_GFP: nohbonds library sorted for GFP fluorescence. 13_w_O_CyanCyan: hbonds library sorted for AmCyan fluorescence. 17_w_x_any_GFP: hbonds library sorted for GFP fluorescence. 20_n_old_GFPCy: ignore. 24_n_X_unsorted: nohobnds library, unsorted. 3_n_O_Cyan_GFP: nohbonds library sorted for GFP fluorescence. 7_n_x_GFP_Cyan: nohbonds library sorted for AmCyan fluorescence. <br> Please cite the reference bioXriv paper or any publisehd paper with the same title...
DOI: 10.35078/5gzq7s
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Teófilo Otoni | Município: Divinolândia de Minas

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.34740/kaggle/dsv/4872386
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.6084/m9.figshare.21647915.v1
title: Table 1S.docx

description: The information on cows was not included in the statistical analysis
DOI: 10.5281/zenodo.7550896
title: Shapefiles of administrative boundaries, Subway and main rivers in Glasgow, UK, around 1910

description: This collection consists of ESRI shapefiles for Glasgow around 1910: sanitary district boundaries in 1903 (Sanitary_Districts.shp, etc.) municipal ward boundaries in 1912 (Wards_1912.shp, etc.) registration district boundaries within the area of the City of Glasgow in 1913 (Registration_Districts.shp, etc.) routes of main rivers (River Clyde and River Kelvin) around 1915 (Rivers.shp, etc.) route of the Glasgow Subway around 1915 (Subway.shp, etc.) For details of shapefile construction, please see the descriptions in the following article: Angelopoulos, K., Stewart, G. and Mancy, R. <em>Local infectious disease experience influences vaccine refusal rates: a natural experiment. Proceedings of the Royal Society B: Biological Sciences. DOI: 10.1098/rspb.2022.1986.</em> Details of construction and references to original map sources are provided in the second paragraph of the section "Geographic conversion" in the online supplementary materials of the above reference. Further information about the boundaries is provided in the caption of Figure S1 of the supplementary materials. Additional contextual information is provided in both the main text and supplementary materials.
description: {"references": ["Angelopoulos, K., Stewart, G. and Mancy, R. Local infectious disease experience influences vaccine refusal rates: a natural experiment. Proceedings of the Royal Society B: Biological Sciences. DOI: 10.1098/rspb.2022.1986."]}
DOI: 10.6084/m9.figshare.21922554
title: Supplementary Material for: The Clinical and Mutational Spectrum of 69 Turkish Children with Autosomal Recessive or Autosomal Dominant Polycystic Kidney Disease: A Multicenter Retrospective Cohort Study

description: <b><i>Introduction:</i></b> Autosomal recessive polycystic kidney disease (ARPKD) is associated with pathogenic variants in the <i>PKHD1</i> gene. Autosomal dominant polycystic kidney disease (ADPKD) is mainly associated with pathogenic variants in <i>PKD1</i> or <i>PKD2</i>. The present study aimed to identify the clinical and genetic features of Turkish pediatric ARPKD and ADPKD patients. <b><i>Methods:</i></b> This multicenter, retrospective cohort study included 21 genetically confirmed ARPKD and 48 genetically confirmed ADPKD patients from 7 pediatric nephrology centers. Demographic features, clinical, and laboratory findings at presentation and during 12-month intervals were recorded. <b><i>Results:</i></b> The median age of the ARPKD patients at diagnosis was lower than the median age of ADPKD patients (10.5 months [range: 0–15 years] vs. 5.2 years [range: 0.1–16 years], respectively, [<i>p</i> = 0.014]). At the time of diagnosis, the median eGFR in the ARPKD patients was lower compared to that of ADPKD patients (81.6 [IQR: 28.7–110.5] mL/min/1.73 m<sup>2</sup> and 118 [IQR: 91.2–139.8] mL/min/1.73 m<sup>2</sup>, respectively, [<i>p</i> = 0.0001]). In total, 11 (52.4%) ARPKD patients had malnutrition; 7 (33.3%) patients had growth retardation at presentation; and 4 (19%) patients had both malnutrition and growth retardation. At diagnosis, 8 (16.7%) of the ADPKD patients had malnutrition, and 5 (10.4%) patients had growth retardation. The malnutrition, growth retardation, and hypertension rates at diagnosis were higher in the ARPKD patients than the ADPKD patients (<i>p</i> = 0.002, <i>p</i> = 0.02, and <i>p</i> = 0.0001, respectively). ARPKD patients with malnutrition and growth retardation had worse renal survival compared to the patients without (<i>p</i> = 0.03 and <i>p</i> = 0.01). Similarly, ADPKD patients with malnutrition had worse renal survival compared to the patients without (<i>p</i> = 0.002). ARPKD patients with truncating variants had poorer 3- and 6-year renal outcome than those carrying non-truncating variants (<i>p</i> = 0.017). <b><i>Conclusion:</i></b> Based on renal survival analysis, type of genetic variant, growth retardation, and/or malnutrition at presentation were observed to be factors associated with progression to chronic kidney disease (CKD). Differentiation of ARPKD and ADPKD, and identification of the predictors of the development of CKD are vital for optimal management of patients with ARPKD or ADPKD.
DOI: 10.5281/zenodo.7550809
title: GlobBiomass dataset of forest biomass, North America N (25 m)

description: The dataset consists of a map of above ground forest biomass (AGB, unit: tons/ha i.e., Mg/ha) of the North American region between 50°N and 90°N for the year 2010 (raster dataset) with a pixel size of 25 m x 25 m. AGB is defined as the mass, expressed as oven-dry weight of the woody parts (stem, bark, branches and twigs) of all living trees excluding stump and roots. Per-pixel estimates of above-ground biomass uncertainty expressed as standard error in Mg/ha (raster dataset) are also provided. The AGB estimates were obtained from spaceborne SAR (ALOS PALSAR, Envisat ASAR), optical (Landsat-7), LiDAR (ICESAT), auxiliary datasets with multiple estimation procedures (Santoro et al., ESSD, 2021). In this repository, the AGB data are available in form of tiles of 2° x 2° (bounding box: longitude -180°E/-26°E latitude: 50°N/+90°N). This dataset is the basis for the official GlobBiomass dataset consisting of global estimates of forest biomass with 1 ha pixels (https://doi.pangaea.de/10.1594/PANGAEA.894711). The dataset in this repository represents the original GlobBiomass dataset of AGB from which the official dataset was obtained after averaging from 25 m to 100 m. Given the lower accuracy of the 25 m pixel-based estimates, it is recommended to use the official GlobBiomass dataset unless detailed spatial resolution is a fundamental asset. Technical specifications are provided in the file README_GLOBBIOMASS_North_America_N_20210428.pdf
DOI: 10.5281/zenodo.7550808
title: GlobBiomass dataset of forest biomass, North America N (25 m)

description: The dataset consists of a map of above ground forest biomass (AGB, unit: tons/ha i.e., Mg/ha) of the North American region between 50°N and 90°N for the year 2010 (raster dataset) with a pixel size of 25 m x 25 m. AGB is defined as the mass, expressed as oven-dry weight of the woody parts (stem, bark, branches and twigs) of all living trees excluding stump and roots. Per-pixel estimates of above-ground biomass uncertainty expressed as standard error in Mg/ha (raster dataset) are also provided. The AGB estimates were obtained from spaceborne SAR (ALOS PALSAR, Envisat ASAR), optical (Landsat-7), LiDAR (ICESAT), auxiliary datasets with multiple estimation procedures (Santoro et al., ESSD, 2021). In this repository, the AGB data are available in form of tiles of 2° x 2° (bounding box: longitude -180°E/-26°E latitude: 50°N/+90°N). This dataset is the basis for the official GlobBiomass dataset consisting of global estimates of forest biomass with 1 ha pixels (https://doi.pangaea.de/10.1594/PANGAEA.894711). The dataset in this repository represents the original GlobBiomass dataset of AGB from which the official dataset was obtained after averaging from 25 m to 100 m. Given the lower accuracy of the 25 m pixel-based estimates, it is recommended to use the official GlobBiomass dataset unless detailed spatial resolution is a fundamental asset. Technical specifications are provided in the file README_GLOBBIOMASS_North_America_N_20210428.pdf
DOI: 10.5281/zenodo.6655532
title: Remote sensing of river discharge (RSQ) estimates derived from multi-temporal Landsat width observations and BAM/geoBAM discharge inversion algorithms

description: <strong>This repository provides three data files in CSV format:</strong><br> 1. Gauge name, lat/lon information<br> 2. Gauge name, date, and multi-temporal river width extracted from Landsat<br> 3. Gauge name, date, and BAM/geoBAM estimates of river discharge with monthly Q priors Note: the multi-temporal river width data were extracted from Landsat imageries using RivWidthCloud, where the river centerline/orthogonal line definition and the cross-section sampling strategies were made prior to, and different from Feng et al. (2022). So the width values may be different from Feng et al. (2022) at some locations due to these differences. The discharge estimates were derived from BAM/geoBAM algorithms with width-only observations. More details of the technical workflow and the inner workings of BAM/geoBAM were provided in the literature below and papers therein. <strong>Reference:</strong> Lin, P., D. Feng, C.J. Gleason, M. Pan, C.B. Brinkerhoff, X. Yang, H.E. Beck, R. Frasson (2023). Inversion of river discharge from remotely sensed river widths: a critical assessment at three-thousand global river gauges. <em>RSE</em>. Updated: 2022/6/17, 2023/1/19
DOI: 10.5281/zenodo.6655531
title: Remote sensing of river discharge (RSQ) estimates derived from multi-temporal Landsat width observations and BAM/geoBAM discharge inversion algorithms

description: <strong>This repository provides three data files in CSV format:</strong><br> 1. Gauge name, lat/lon information<br> 2. Gauge name, date, and multi-temporal river width extracted from Landsat<br> 3. Gauge name, date, and BAM/geoBAM estimates of river discharge with monthly Q priors Note: the multi-temporal river width data were extracted from Landsat imageries using RivWidthCloud, where the river centerline/orthogonal line definition and the cross-section sampling strategies were made prior to, and different from Feng et al. (2022). So the width values may be different from Feng et al. (2022) at some locations due to these differences. The discharge estimates were derived from BAM/geoBAM algorithms with width-only observations. More details of the technical workflow and the inner workings of BAM/geoBAM were provided in the literature below and papers therein. <strong>Reference:</strong> Lin, P., D. Feng, C.J. Gleason, M. Pan, C.B. Brinkerhoff, X. Yang, H.E. Beck, R. Frasson (2023). Inversion of river discharge from remotely sensed river widths: a critical assessment at three-thousand global river gauges. <em>RSE</em>. Updated: 2022/6/17, 2023/1/19
DOI: 10.35078/8fru6a
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Teófilo Otoni| Município: São José do Divino

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.5281/zenodo.7193516
title: caLIBRAte - eNanoMapper database

description: The objective of the caLIBRAte project was to establish a state-of-the-art versatile Risk Governance framework for assessment and management of human and environmental risks of MN and MN-enabled products. Since 1 October 2022 the data gathered in the project are publicly available via the caLIBRAte - eNanoMapper database. A standalone Docker instance is also available. The caLIBRAte database is subject to updates during completion of supplemental analysis after publication as an open database entity.
DOI: 10.5281/zenodo.7193515
title: caLIBRAte - eNanoMapper database

description: The objective of the caLIBRAte project was to establish a state-of-the-art versatile Risk Governance framework for assessment and management of human and environmental risks of MN and MN-enabled products. Since 1 October 2022 the data gathered in the project are publicly available via the caLIBRAte - eNanoMapper database. A standalone Docker instance is also available. The caLIBRAte database is subject to updates during completion of supplemental analysis after publication as an open database entity.
DOI: 10.6084/m9.figshare.21647915.v2
title: Table 1S.docx

description: The information on cows was not included in the statistical analysis
DOI: 10.6084/m9.figshare.20489562
title: Supplementary Material for: A Multistep Tumor Growth Model of High Grade Serous Ovarian Carcinoma Identifies Hypoxia Associated Signatures

description: High-grade serous ovarian carcinoma (HGSC) is associated with late-stage disease presentation and poor prognosis, with limited understanding of early transformation events. Our study presents a comprehensive analysis of tumor progression and organ-specific metastatic dissemination to identify hypoxia-associated molecular, cellular, and histological alterations during HGSC tumor growth. H&E staining and subsequent histological assessment of tumor volume-based categories revealed recapitulation of numerous clinical features, including the prevalence of &gt;0.0625≤0.5cm3 volume tumors and metastatic spread by orthotopic xenografts. The constant evolution of the tissue architecture concerning increased hyaluronic acid deposition, tumor vasculature, necrosis, altered proliferative potential, and gland forming ability of the tumor cells was identified. Flow cytometry and label chase-based molecular profiling across the tumor regenerative hierarchy identified the hypoxia-vasculogenic niche and the hybrid epithelial-mesenchymal tumor-cell state as determinants of self-renewal capabilities of progenitors and cancer stem cells (CSCs). A regulatory network and mathematical model based on tumor histology and molecular signatures predicted hypoxia-inducible factor 1-alpha (HIF1A) as a central node connecting epithelial-mesenchymal transition, metabolic and necrotic pathways in HGSC tumors. Thus, our findings provide a temporal resolution of hypoxia-associated events that sculpt HGSC tumor growth, and an in-depth understanding of it may aid in the early detection and treatment of HGSC.
DOI: 10.17909/cnj9-dj41
title: RN Alpha Scl
DOI: 10.35078/8cceqr
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Varginha | Município: São João Del Rei

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.15156/bio/sh1421464.08fu
title: SH1421464.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1421465.08fu
title: SH1421465.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1421466.08fu
title: SH1421466.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.25549/one-c4-32595
title: John B., letters (1955/1964)

description: John B., letters mentioning the Canyon California Post and social services; includes photographs of the Canyon Post Office, and responses from Ann Carll Reid, Jim Kepner, and Chuck Thompson (1955/1964)
DOI: 10.15156/bio/sh1421467.08fu
title: SH1421467.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.