cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7198908
title: [IO Islamic 774] ترجمة الفرج بعد الشدّة

description: <strong>Tarjumat-alfaraj ba’d-alshiddah.</strong> <strong>This manuscript is now IO Islamic 736 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 774 here with notations and hyperlinks].</strong> 736 Another still more defective copy of the same. This copy is defective at the end, breaking off on fol. 557<sup>b</sup> with the words:شرمسار گشتند و عذرها .... , corresponding to the preceding copy, fol. 307<sup>a</sup>, l. 11. There is besides a large lacuna in the middle of fol. 105<sup>b</sup>, between ll. 5 and 6, comprising the remaining part of bâb IV, from the twelfth story on to the end, as well as the beginning of bâb V, nearly to the end of the eighth story (corresponding to ff. 55<sup>a</sup>, l. 15-77<sup>a</sup>, l. 8, in the preceding copy). Index, on fol. 6<sup>b</sup>.Bâb I, on fol. 19<sup>b</sup>; II, on fol. 33<sup>b</sup>; III, on fol. 53<sup>b</sup>; IV, on fol. 88<sup>b</sup>; V, missing; VI, on fol. 149<sup>a</sup>; VII, on fol. 186<sup>a</sup>; VIII, on fol. 326<sup>b</sup>; IX, on fol. 361<sup>b</sup>; X, on fol. 385<sup>a</sup>; XI, on fol. 400<sup>a</sup>; XII, on fol. 427<sup>a</sup>; XIII, on fol. 473<sup>b</sup>. The copy, which is not dated, is somewhat worm-eaten throughout, but in most places carefully mended. The last leaves are seriously damaged. Instead of فرج there is everywhere written فرح, as in the Munich copy (see J. Aumer, loc. cit.). No. 774, ff. 557, ll. 17; large Nasta’lîḳ; size, 9<sup>7/8</sup> in. by 5<sup>7/8</sup> in.
DOI: 10.5281/zenodo.7198907
title: [IO Islamic 774] ترجمة الفرج بعد الشدّة

description: <strong>Tarjumat-alfaraj ba’d-alshiddah.</strong> <strong>This manuscript is now IO Islamic 736 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 774 here with notations and hyperlinks].</strong> 736 Another still more defective copy of the same. This copy is defective at the end, breaking off on fol. 557<sup>b</sup> with the words:شرمسار گشتند و عذرها .... , corresponding to the preceding copy, fol. 307<sup>a</sup>, l. 11. There is besides a large lacuna in the middle of fol. 105<sup>b</sup>, between ll. 5 and 6, comprising the remaining part of bâb IV, from the twelfth story on to the end, as well as the beginning of bâb V, nearly to the end of the eighth story (corresponding to ff. 55<sup>a</sup>, l. 15-77<sup>a</sup>, l. 8, in the preceding copy). Index, on fol. 6<sup>b</sup>.Bâb I, on fol. 19<sup>b</sup>; II, on fol. 33<sup>b</sup>; III, on fol. 53<sup>b</sup>; IV, on fol. 88<sup>b</sup>; V, missing; VI, on fol. 149<sup>a</sup>; VII, on fol. 186<sup>a</sup>; VIII, on fol. 326<sup>b</sup>; IX, on fol. 361<sup>b</sup>; X, on fol. 385<sup>a</sup>; XI, on fol. 400<sup>a</sup>; XII, on fol. 427<sup>a</sup>; XIII, on fol. 473<sup>b</sup>. The copy, which is not dated, is somewhat worm-eaten throughout, but in most places carefully mended. The last leaves are seriously damaged. Instead of فرج there is everywhere written فرح, as in the Munich copy (see J. Aumer, loc. cit.). No. 774, ff. 557, ll. 17; large Nasta’lîḳ; size, 9<sup>7/8</sup> in. by 5<sup>7/8</sup> in.
DOI: 10.34740/kaggle/dsv/4328046
title: Elon Musk Tweets
DOI: 10.6084/m9.figshare.21334593
title: scale_AVK1-MCF7-E2.bigwig

description: E2 ATACseq
DOI: 10.6084/m9.figshare.21334593.v1
title: scale_AVK1-MCF7-E2.bigwig

description: E2 ATACseq
DOI: 10.5281/zenodo.7179616
title: Dataset: Green Mark certified buildings metadata from Singapore

description: In many countries, there are local efforts and incentives to further increase the adoption of greener buildings. This highlights the critical need for buildings to be green and tools to facilitate their transformation for new and existing building owners. Thus, this work curates a dataset regarding the actions and features implemented by building stakeholders to attain the Green Mark (GM) certification which promotes the adoption of numerous green building technologies. Public data from 3,583 entries over 17 years was extracted and pre-processed. Green features of each certified entry were identified and labeled accordingly using a list of keywords created from the GM certification assessment criteria. We present an overview of the dataset and key insights into the building retrofitting landscape. The dataset is available at https://github.com/buds-lab/data-driven-greenmark as well as the feature descriptions, raw data processing and raw files.
description: {"references": ["Teo et al. (2022). Dataset: Green Mark certified buildings metadata from Singapore. In The Fifth International Workshop on Data: Acquisition To Analysis (DATA '22), November 6\u20139, 2022, Boston, MA, USA. ACM, New York, NY, USA, 3 pages. https://doi.org/10.1145/3560905. 3567771"]}
DOI: 10.5281/zenodo.7179617
title: Dataset: Green Mark certified buildings metadata from Singapore

description: In many countries, there are local efforts and incentives to further increase the adoption of greener buildings. This highlights the critical need for buildings to be green and tools to facilitate their transformation for new and existing building owners. Thus, this work curates a dataset regarding the actions and features implemented by building stakeholders to attain the Green Mark (GM) certification which promotes the adoption of numerous green building technologies. Public data from 3,583 entries over 17 years was extracted and pre-processed. Green features of each certified entry were identified and labeled accordingly using a list of keywords created from the GM certification assessment criteria. We present an overview of the dataset and key insights into the building retrofitting landscape. The dataset is available at https://github.com/buds-lab/data-driven-greenmark as well as the feature descriptions, raw data processing and raw files.
description: {"references": ["Teo et al. (2022). Dataset: Green Mark certified buildings metadata from Singapore. In The Fifth International Workshop on Data: Acquisition To Analysis (DATA '22), November 6\u20139, 2022, Boston, MA, USA. ACM, New York, NY, USA, 3 pages. https://doi.org/10.1145/3560905. 3567771"]}
DOI: 10.34740/kaggle/dsv/4328070
title: COVID Vaccination in World (updated daily)
DOI: 10.6084/m9.figshare.21334614
title: scale_AVK2-MCF7-E2-DOX.bigwig

description: ATACseq E2 Dox
DOI: 10.6084/m9.figshare.21334614.v1
title: scale_AVK2-MCF7-E2-DOX.bigwig

description: ATACseq E2 Dox
DOI: 10.5281/zenodo.7198935
title: RNA-Seq data of Raji cells transduced with retrovirus expressing WT or mutant IRF4

description: Total RNA was extracted using RNAiso Plus (TaKaRa) from Raji cells transduced with retrovirus expressing WT or mutant IRF4. RNA-seq was performed by BGI (Beijing Genomic Institute, ShenZhen, China) using the BGISEQ-500 platform, pair end 100 bases read lengths. The sequencing data were filtered with SOAPnuke (v1.5.2). The clean reads were mapped to the reference genome using HISAT2 (v2.0.4). After that, Ericscript (v0.5.5) and rMATS (V3.2.5) were used to identify genes and differentially spliced genes (DSGs), respectively. Bowtie2 (v2.2.5) was applied to align the clean reads to the gene set, a database for this organism built by BGI with known and novel coding transcripts included, then the expression level of gene was calculated by RSEM (v1.2.12).
DOI: 10.5281/zenodo.7198934
title: RNA-Seq data of Raji cells transduced with retrovirus expressing WT or mutant IRF4

description: Total RNA was extracted using RNAiso Plus (TaKaRa) from Raji cells transduced with retrovirus expressing WT or mutant IRF4. RNA-seq was performed by BGI (Beijing Genomic Institute, ShenZhen, China) using the BGISEQ-500 platform, pair end 100 bases read lengths. The sequencing data were filtered with SOAPnuke (v1.5.2). The clean reads were mapped to the reference genome using HISAT2 (v2.0.4). After that, Ericscript (v0.5.5) and rMATS (V3.2.5) were used to identify genes and differentially spliced genes (DSGs), respectively. Bowtie2 (v2.2.5) was applied to align the clean reads to the gene set, a database for this organism built by BGI with known and novel coding transcripts included, then the expression level of gene was calculated by RSEM (v1.2.12).
DOI: 10.25921/67a7-s312
title: EK80 Water Column Sonar Data Collected During RL1603
DOI: 10.25934/pr00007427
title: Dose reduction and discontinuation of disease modifying anti-rheumatic drugs (DMARDs) for juvenile idiopathic arthritis

description: Juvenile idiopathic arthritis (JIA) is the most common rheumatic disease in childhood, affecting 1 in every 1000 children. It is a chronic condition mediated by the body's own immune system attacking joints of a young person, causing pain, stiffness, joint swelling, loss of function and loss of mobility.
There are many contemporary pharmacological treatments for JIA include glucocorticoids (systemic and intra-articular), non-steroidal anti-inflammatory drugs (NSAIDs) and disease modifying anti-rheumatic drugs (DMARDS) including conventional synthetic DMARDs (csDMARDs), biologic DMARDs (bDMARDs) and targeted synthetic DMARDs (tsDMARDs). Due largely to these treatments, disease remission is now a realistic target for many patients.
Many patients with JIA are able to achieve clinical remission off medication (Guzman 2015; Tiller 2018; Wallace 2004). For this reason, it is appropriate to consider medication dose reduction or discontinuation for some patients. There is no consensus on the optimal strategy for dose reduction or discontinuation of medications in patients with JIA and clinically inactive disease. This topic has not been addressed in major international guidelines given the paucity of evidence (Davies 2010; Munro 2014; Ravelli 2018; Ringold 2019), leading to uncertainty for patients and unnecessary heterogeneity in practice (Horton 2017; Shenoi 2019). 
This is a protocol for an intervention Cochrane Systematic Review, which will review and collate the data through meta-analysis of the currently available high quality evidence of a specified formulated question. A systematic review utilising Cochrane methodology will specifically extract and analyse data exclusively from randomised controlled trials. The review of existing research will be conducted using a well-established and clearly defined process to ensure accurate evaluation of the studies.
There are no existing Cochrane reviews exploring this topic. A recent systematic review has been undertaken but has not completely adhered to the Cochrane methodology (Halyabar 2019). There are also several upcoming trials that will address this question and the topic could be suitable to adapt as a 'Living Guideline'.
This will be a systematic review that will be conducted according to the guidelines recommended by the Cochrane Musculoskeletal Group Editorial Board (Ghogomu 2014). It will analyse relevant randomised controlled trials and collate results for meta-analysis.
DOI: 10.5281/zenodo.7198900
title: Supplementary datasets for manuscript bioRxiv https://doi.org/10.1101/2022.06.03.494642

description: <strong>Supplementary Data 1.</strong> Database of reference human messenger RNAs and SARS-CoV-2 genomes used for mapping reads. Raw count matrices. <strong>Supplementary Data 2</strong><strong>.</strong> Expression matrices and transcript levels in uninfected cells. <strong>Supplementary Data 3.</strong> Differential Expressed Gene analysis used in the volcano plots analysis. Datasets and results used in the Gene Ontology analyses. Classification of outliers. <strong>Supplementary Data 4.</strong> Transcriptional profiles for all genes in each cell type. <strong>Supplementary Data 5.</strong> Networks used in the analyses presented in Figs. 5 and 6. <strong>Supplementary Data 6.</strong> Transcriptional analysis of human astrovirus 1 infection in ileum organoids.
DOI: 10.5281/zenodo.7198899
title: Supplementary datasets for manuscript bioRxiv https://doi.org/10.1101/2022.06.03.494642

description: <strong>Supplementary Data 1.</strong> Database of reference human messenger RNAs and SARS-CoV-2 genomes used for mapping reads. Raw count matrices. <strong>Supplementary Data 2</strong><strong>.</strong> Expression matrices and transcript levels in uninfected cells. <strong>Supplementary Data 3.</strong> Differential Expressed Gene analysis used in the volcano plots analysis. Datasets and results used in the Gene Ontology analyses. Classification of outliers. <strong>Supplementary Data 4.</strong> Transcriptional profiles for all genes in each cell type. <strong>Supplementary Data 5.</strong> Networks used in the analyses presented in Figs. 5 and 6. <strong>Supplementary Data 6.</strong> Transcriptional analysis of human astrovirus 1 infection in ileum organoids.
DOI: 10.5281/zenodo.7198111
title: Insolation values for the climate of the last 10 million years (Tables)

description: Tables published in Berger A. and M. F. Loutre (1991), Insolation values for the climate of the last 10 million years, Quaternary Science Reviews, (10) 297 - 317 doi:10.1016/0277-3791(91)90033-Q and which constitute what is known in the community as the "BER90" solution. Orginal abstract: New values for the astronomical parameters of the Earth's orbit and rotation (eccentricity, obhqulty and precession) are proposed for paleochmatle research related to the Late Miocene, the Pliocene and the Quaternary They have been obtained from a numerical solution of the Lagrangian system of the planetary point masses and from an analytical solution of the Polsson equations of the Earth-Moon system. The analytical expansion developed in this paper allows the direct determination of the main frequencies with their phase and amplitude. Numerical and analytical comparisons with the former astronomical solution BER78 are performed so that the accuracy and the interval of time over which the new solution is valid can be estimated. The corresponding insolation values have also been computed and compared to the former ones. This analysis leads to the conclusion that the new values are expected to be reliable over the last 5 Ma In the time domain and at least over the last 10 Ma in the frequency domain. <br>
description: uploaded by M. Crucifix on 2022-10-14
DOI: 10.5281/zenodo.7198110
title: Insolation values for the climate of the last 10 million years (Tables)

description: Tables published in Berger A. and M. F. Loutre (1991), Insolation values for the climate of the last 10 million years, Quaternary Science Reviews, (10) 297 - 317 doi:10.1016/0277-3791(91)90033-Q and which constitute what is known in the community as the "BER90" solution. Orginal abstract: New values for the astronomical parameters of the Earth's orbit and rotation (eccentricity, obhqulty and precession) are proposed for paleochmatle research related to the Late Miocene, the Pliocene and the Quaternary They have been obtained from a numerical solution of the Lagrangian system of the planetary point masses and from an analytical solution of the Polsson equations of the Earth-Moon system. The analytical expansion developed in this paper allows the direct determination of the main frequencies with their phase and amplitude. Numerical and analytical comparisons with the former astronomical solution BER78 are performed so that the accuracy and the interval of time over which the new solution is valid can be estimated. The corresponding insolation values have also been computed and compared to the former ones. This analysis leads to the conclusion that the new values are expected to be reliable over the last 5 Ma In the time domain and at least over the last 10 Ma in the frequency domain. <br>
description: uploaded by M. Crucifix on 2022-10-14
DOI: 10.6073/pasta/2cea607bcfc63e41c5eee1da15e5a112
title: MCR LTER: Coral Reef: Changes in the abundance of fish functional groups: Adam et al. 2014 Oecologia

description: These data were generated from two long-term time series (knb-lter-mcr.4 and knb-lter-mcr.6) in order to analyze the relationship between the cover of live and dead branching corals and changes in the abundance of different functional groups of fishes following the loss of coral on the fore reef of Moorea due to an outbreak of corallivorous crown-of-thorns sea stars (Acanthaster planci) and a tropical cylcone. Analyses were conducted in support of an ecological manuscript published in Oecologia Adam, T. C., Brooks, A. J., Holbrook, S. J., Schmitt, R. J., Washburn, L., Bernardi, G. How will coral reef fish communities respond to climate-driven disturbances? Insight from landscape-scale perturbations. Global climate change is rapidly altering disturbance regimes in many ecosystems including coral reefs, yet the long-term impacts of these changes on ecosystem structure and function are difficult to predict. A major ecosystem service provided by coral reefs is the provisioning of physical habitat for other organisms, and consequently, many of the effects of climate change on coral reefs will be mediated by their impacts on habitat structure. Therefore, there is urgent need to understand the independent and combined effects of coral mortality and loss of physical habitat on reef-associated biota. Here, we use a unique series of events affecting the coral reefs around the Pacific island of Moorea, French Polynesia to differentiate between the impacts of coral mortality and the degradation of physical habitat on the structure of reef fish communities. We found that by removing large amounts of physical habitat, a tropical cyclone had larger impacts on reef fish communities than an outbreak of coral-eating sea stars that caused widespread coral mortality but left the physical structure intact. In addition, the impacts of declining structural complexity on reef fish assemblages accelerated as structure became increasingly rare. Structure provided by dead coral colonies can take up to decades to erode following coral mortality, and consequently our results suggest that predictions based on short-term studies are likely to grossly underestimate the long-term impacts of coral decline on reef fish communities.
DOI: 10.6073/pasta/25f12ca0357ead3abc53b871c2e2c8cd
title: Beacon Valley Meteorological Station Measurements

description: As part of the Long Term Ecological Research in the McMurdo Dry Valleys of Antarctica, meteorological data was collected from various locations throughout Beacon, Taylor, Wright and Victoria Valleys. These files contain data for the Beacon Valley meteorology station. These data correspond to the Beacon met station. Beacon ceased operations in the 2012 season.
DOI: 10.6073/pasta/d2b4023a299b025c5988c4a5615c81f3
title: Lake Bonney Meteorological Station Measurements

description: As part of the Long Term Ecological Research in the McMurdo Dry Valleys of Antarctica, meteorological data was collected from various locations throughout Taylor, Wright and Victoria Valleys. These files contain data for the Lake Bonney meteorology station (in Taylor Valley). The Lake Bonney metereological data spans from 1993 until now, however, it is possible that the last few months are not posted -- these data may be undergoing review (quality checks, controls, etc).
DOI: 10.6084/m9.figshare.21334693
title: Data for the multiple regression models from Restoration success in former Amazonian mines is driven by soil amendment and forest proximity

description: Contains the plot level data for the multiple regression models
DOI: 10.6084/m9.figshare.21334693.v1
title: Data for the multiple regression models from Restoration success in former Amazonian mines is driven by soil amendment and forest proximity

description: Contains the plot level data for the multiple regression models
DOI: 10.6084/m9.figshare.21334696
title: R code for the multiple regression models from Restoration success in former Amazonian mines is driven by soil amendment and forest proximity

description: Provides the code used to produce the multiple regression models
DOI: 10.6084/m9.figshare.21334696.v1
title: R code for the multiple regression models from Restoration success in former Amazonian mines is driven by soil amendment and forest proximity

description: Provides the code used to produce the multiple regression models
DOI: 10.5281/zenodo.7198898
title: Glass electrode and silicon probe recordings from THY-Tau22 mice

description: This repository contains code used to analyse electrophysiological data obtained from THY-Tau22 mice. Example datasets are included.
DOI: 10.5281/zenodo.7198897
title: Glass electrode and silicon probe recordings from THY-Tau22 mice

description: This repository contains code used to analyse electrophysiological data obtained from THY-Tau22 mice. Example datasets are included.
DOI: 10.5281/zenodo.7199013
title: Thesis Supplementary Data

description: Supplementary Data for Thesis Chapter 6.
DOI: 10.5281/zenodo.7199012
title: Thesis Supplementary Data

description: Supplementary Data for Thesis Chapter 6.
DOI: 10.6084/m9.figshare.21330621
title: IBM Code and Input Data Associated with Brenden, T.O., L.N. Ivan, and T.P. Loch. Reducing Flavobacterium psychrophilum transmission risk in raceways via hatchery-rearing practices: an individual-based modeling evaluation. Aquaculture

description: The Fortran code and description of input data needed for running the code is provided for the individual-based model described in Brenden, T.O., L.N. Ivan, and T.P. Loch. In press. Reducing <em>Flavobacterium psychrophilum</em> transmission risk in raceways via hatchery-rearing practices: an individual-based modeling evaluation. Aquaculture<br> The model is designed to evaluate how rearing practices could limit <em>F. psychrophilum</em>-induced losses of <em>Oncorhynchus mykiss</em> in flow-through, partial-reuse raceway systems. However, the code could be extended for other purspose, such as how immunization procedure might limit disease outbreak. <br> How to Use Hatchery IBM.doc - Description of the IBM, steps for running, and description of the input files the IBM is expecting.<br> Input_CSV_files.zip - .zip file containing all the input files needed for running the IBM<br> HatcheryVaccination_pub.f95 - IBM model programmed in Fortran (expects a gfortran compiler)<br>
DOI: 10.6084/m9.figshare.21330621.v1
title: IBM Code and Input Data Associated with Brenden, T.O., L.N. Ivan, and T.P. Loch. Reducing Flavobacterium psychrophilum transmission risk in raceways via hatchery-rearing practices: an individual-based modeling evaluation. Aquaculture

description: The Fortran code and description of input data needed for running the code is provided for the individual-based model described in Brenden, T.O., L.N. Ivan, and T.P. Loch. In press. Reducing <em>Flavobacterium psychrophilum</em> transmission risk in raceways via hatchery-rearing practices: an individual-based modeling evaluation. Aquaculture<br> The model is designed to evaluate how rearing practices could limit <em>F. psychrophilum</em>-induced losses of <em>Oncorhynchus mykiss</em> in flow-through, partial-reuse raceway systems. However, the code could be extended for other purspose, such as how immunization procedure might limit disease outbreak. <br> How to Use Hatchery IBM.doc - Description of the IBM, steps for running, and description of the input files the IBM is expecting.<br> Input_CSV_files.zip - .zip file containing all the input files needed for running the IBM<br> HatcheryVaccination_pub.f95 - IBM model programmed in Fortran (expects a gfortran compiler)<br>