cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28081751.v1
title: <b>Macroautophagy and metabolomic</b><b> machinery as a prospective Therapeutic Target in Endometrial hyperplasia: ERDj-3/HSP-70/C-fos/mTOR signaling pathways</b>

description: Endometrial cancer (EC) is the fourth most frequent gynecological cancer and a highly abundant type of uterine cancer. There is an increase in the incidence and mortality of uterine cancers in the past few decades. A comprehensive systematic study to provide an overview on the relationship between macroautophagy, metabolomics and the risk of oestradiol valerate (OV) induced endometrial cancer was conducted correlated with the use of liposomal loaded resevetrol as an innovate drug delivery system. This article explores how metabolomic technology can offer valuable insights into autophagy molecular aspects in EC by identifying new possible metabolites that have the potential to improve the accuracy of diagnosis, prognosis, and monitoring the disease. Metabolomics approach, included orthogonal partial least squares discriminant analysis (OPLS-DA), thus revolutionizing the management of endometrial cancer and correlated it to<b> </b>autophagy represented in endometrial cancers, via highlighting the role of mTOR/ERDj-4/HSP-70/C-fos/PTEN/ p53 signaling pathways that trigger or inhibit the process and consequently represent a potential molecular targets in further therapeutic approaches.
DOI: 10.17608/k6.auckland.9927278.v3
title: World list of isopod species and their authorities.xlsx

description: This dataset contains a list of the world's isopod species obtained from the World Register of Marine Species (WoRMS), as well as a list of first authors from the species' descriptions.Additional information on the environment, authorities and year of description is provided.Temporal range from 1758 to 2018.
DOI: 10.17632/2mxw5bh6yw
title: China 2017-2021 rapeseed map

description: China rapeseed maps for 2017-2021 were the 20-meter resolution rapeseed classification product generated by RSG-OC algorithms. The product is divided into 52 regular 5°*6° tiles (Figure 1). Each tile is named by “N”+6° Zone Number. +"_"+ the initial latitude+ "_"+ the year of the map + “RapeseedMap”+the resolution+”.tif”, where 6°Zone Number is the value of the 6° zone where the tile is located and Initial latitude is the latitude value of the lower edge line of the tile.
DOI: 10.6084/m9.figshare.25211531.v1
title: Essential Oils Data

description: Spatial Habitat Suitability Prediction of Essential Oil Wild Plants on Indonesia’s Degraded Lands
DOI: 10.6084/m9.figshare.4898033.v1
title: FS844 contigs and profile databases

description: anvi'o contigs database and profile database for sample FS844 from the Mid-Cayman Rise. See project description for instructions.
DOI: 10.25452/figshare.plus.21761465.v1
title: A Non-Laboratory Gait Dataset of Full Body Kinematics and Egocentric Vision (Part 2)

description: The dataset contain full-body kinematics for walking, with and without stops, stair ambulation, obstacle course navigation, dynamic movements intended to test agility, and negotiating common obstacles in public spaces such as chairs. The dataset contains 24.2 total hours of movement data from a college student population with an approximately equal split of males to females. In addition, for one of the activities, we captured the egocentric field of view and gaze of the subjects using an eye tracker. Note that this is a subset of the entire data described in https://github.com/abs711/The-way-of-the-future. This repository contains 19 subjects for the Activity 6. The remaining data can be accessed through the other figshare repository on https://github.com/abs711/The-way-of-the-future
DOI: 10.6084/m9.figshare.103899.v1
title: Transmission electron microscopy of a chc1 (clathrin) mutant in yeast

description: Electron micrographs of <em>chc1</em> (clathrin heavy chain) mutant yeast cells.
DOI: 10.6084/m9.figshare.24166428.v3
title: <b>Assessing the multidimensional impacts of agroecological practices in Southeast Asia. A review</b>

description: This dataset has been uploaded on figshare to complement the review article: "Assessing the multidimensional impacts of agroecological practices in Southeast Asia. A review" published in the journal "Agronomy for Sustainable Development". The dataset consists of data extracted from 97 articles selected because of their focus on the impacts of agroecological farming practices in South East Asia.The dataset consists of 2 spreadsheets: 1. Articles for data extraction (n=97); 2. Metadata. The Spreadsheet “1.Dataset summary” includes information about: Countries of the study; Study design; Methods, AE practices; Impact dimensions; Indicators; Impact direction.
DOI: 10.6084/m9.figshare.27992417.v4
title: CMAB-The World's First National-Scale Multi-Attribute Building Dataset

description: Rapidly acquiring three-dimensional (3D) building data, including geometric attributes like rooftop, height and orientations, as well as indicative attributes like function, quality, and age, is essential for accurate urban analysis, simulations, and policy updates. Current building datasets suffer from incomplete coverage of building multi-attributes. This paper presents the first national-scale Multi-Attribute Building dataset (CMAB) with artificial intelligence, covering 3,667 spatial cities, 31 million buildings, and 23.6 billion m² of rooftops with an F1-Score of 89.93% in OCRNet-based extraction, totaling 363 billion m³ of building stock. We trained bootstrap aggregated XGBoost models with city administrative classifications, incorporating morphology, location, and function features. Using multi-source data, including billions of remote sensing images and 60 million street view images (SVIs), we generated rooftop, height, structure, function, style, age, and quality attributes for each building with machine learning and large multimodal models. Accuracy was validated through model benchmarks, existing similar products, and manual SVI validation, mostly above 80%. Our dataset and results are crucial for global SDGs and urban planning.Data records: A building dataset with a total rooftop area of 23.6 billion square meters in 3,667 natural cities in China, including the attribute of building rooftop, height, structure, function, age, style, colour and quality, as well as the code files used to calculate these data. The deep learning models used are OCRNet, XGBoost, fine-tuned CLIP and Yolo-v8.Reference Format：Zhang, Y., Zhao, H. & Long, Y. CMAB: A Multi-Attribute Building Dataset of China. Sci Data 12, 430 (2025). https://doi.org/10.1038/s41597-025-04730-5.
DOI: 10.6084/m9.figshare.28079846.v2
title: Onion (Allium cepa L.) DHW30006 Genome Information

description: Onion (<i>Allium cepa</i> L.) is an economically valuable crop, but its large, repeat-enriched genome makes genome assembly difficult and limits molecular breeding and biological studies. Herein, we present a chromosomal-level reference genome assembly of the double-haploid onion line DHW30006, constructed by combining PacBio, Illumina, and Hi-C sequencing approaches. The assembled genome totaled 12.77 Gb, with 65,730 gene models, and was anchored to eight pseudo-chromosomes covering 12.07 Gb (94.5%), with a scaffold N50 of 1.40 Gb. DHW30006 onion genome contained improved gene models covering approximately 580 Mb (4.54%) of the genic regions with an average gene length of 8,827 bp and 5.48 exons per gene. These gene models represented the most improved annotation among <i>Allium</i> genomes. This onion genome will serve as a valuable resource for breeding and biological research in <i>Allium</i> plants.
DOI: 10.17632/32p7btkgr4
title: Psychometric Evaluation of the SPS - South Africa

description: Data pertaining to the publication "A Psychometric Evaluation of the Highly Sensitive Person Scale in Ethnically and Culturally Heterogeneous South African Samples"
DOI: 10.17632/yrmd2mm37h
title: RNA sequencing data for APP, Shal/Kv4 and dTrpA1 mutants (Drosophila)

description: RNA-seq raw data.
DOI: 10.6084/m9.figshare.10062371.v2
title: Molecular phylogenetics and evolutionary history of the endemic land snail genus Everettia in northern Borneo

description: <b>Supplemental Information</b> Additional File 1. Species records of Genus <i>Everettia</i> in Sabah for Maxent Analysis. The table consists of the 718 records of 17 <i>Everettia</i> species in Sabah obtained from BORNEENSIS collection, Universiti Malaysia Sabah. The collection lot reference number, number of specimens in each collection lot, and the geographic coordinates of the specimens were included in the table. Additional File 2. Results of ModelTest for each partition of DNA sequencing alignment and parameter used in BEAST analysis. Each of the six partitions, namely, codons of COI, namely, 1st, 2nd and 3rd codon positions of COI, 16S rDNA, ITS-1, and 28S rDNA, was tested for molecular evolution via ModelFinder (Kalyaanamoorthy et al., 2017) and partition models (Chernomor et al., 2016) based on the both AIC and BIC that built into IQ-Tree v.1.6.7 (Nguyen et al., 2015; Trifinopoulos et al. 2016). We limited the candidate models to the six models that are available in MrBayes analysis, namely, JC, F81, K80, HKY, SYM, and GTR. Additional File 3. A zipped folder consists of input files and outputs of Bayesian (BA) and Maximum Likelihood (ML) analysis. The input files and outputs of Bayesian (BA) and Maximum Likelihood (ML) analysis for each of two different best-fit substitution models selected by BIC and AIC criteria, respectively. The phylogenies for each of the analyses were summarised in the word document file. Additional File 4. A zipped folder consists of input files and outputs of BEAST analysis. A total of four BEAST input XML files for the combinations two different best-fit substitution models (selected by BIC and AIC criteria) and two calibrated models (Yule model vs. Birth-Death model). The calibrated phylogenies for each of the four analyses were summarised in the word document file. Additional File 5. Correlations between bioclim variables. Bioclimatic variables were sampled 500 at random locations in Borneo in each of the 19 climatic layers. Collinearity among the 19 climatic variables was evaluated by using pairwise Pearson’s r correlation. After the analysis, 12 highly correlated variables (r &gt; 0.8) were excluded from MAXENT analysis. The seven climatic variables were used for species distribution modelling, namely, BIO1 Annual Mean Temperature, BIO3 Isothermality, BIO4 Temperature Seasonality, BIO7 Temperature Annual Range, BIO12 Annual Precipitation, BIO15 Precipitation Seasonality, and BIO19 Precipitation of Coldest Quarter. Additional File 6. Concatenated DNA Data Matrix for 16S, COI, ITS, and 28S Sequences for 73 taxa. DNA sequences alignment in FASTA format. Position 1-501: 16S; Position 502-1059: COI; Position 1060-1869: ITS; and Position 1870-2795: 28S.
DOI: 10.6084/m9.figshare.12369926.v1
title: Data item S1.zip

description: The archive contains the transcript annotations analyzed in the study. For a detailed description of its contents please refer to the included Readme.<br>
DOI: 10.6084/m9.figshare.5229898.v1
title: c-fos Immunohistochemistry Protocol

description: <b>Introduction</b>Many studies on memory and learning utilize the immediate early gene c-Fos as an indicator of recent synaptic activity. By quantifying c-Fos positive neurons, we can compare activity across different populations in the brain, and analyze co-labelled neurons with other useful cell markers such as BrdU and Doublecortin.Our lab recently devised an amplification protocol for c-Fos stains that specifically increases the intensity of the signal via a Biotin-Streptavidin-Rhodamine complex (see below). We have demonstrated this amplification protocol is effective over a wide range of primary antibody dilutions, with strong signaling from 1:250 to 1:5000 dilution. Basically, our amplification protocol is a fluorescent dream come true. But don’t just take our word for it, check it out for yourself. Dilutions and amplification conditions are stated in the image filenames.<b>Protocol</b>Day 1:<br>1) 3 x 5 min wash in PBS<br>2) 30 min wash 10% PBS-Triton X (TX) with 3% horse serum<br>3) Add primary antibody for 3-day incubation period (tested range of 1:250 to 1:5000 dilution of c-Fos antibody (Santa Cruz, sc-52-G) in 10% PBS-TX w/ 3% horse serum)Day 2:<br>1) 3 x 5 min wash in PBS-TX<br>2) 1 hour at room temp Secondary Antibody (biotinylated anti-goat 1:250, Jackson Immuno #705-065-147, in 10% PBS-TX w/ 3% horse serum)<br>3) 3 x 5 min wash in PBS<br>4) 30 min Blocking Solution at 5%<br>a) To make blocking solution:<br>- 40 mL PBS<br>- 0.2g blocking powder (Perkin Elmer, FP1020)<br>- Warm to dissolve then cool to room temp before use<br>5) 1:100 Streptavidin Horseradish Peroxidase (Perkin Elmer, NEL750) in Blocking Solution for 1 hour<br>6) 3 x 5 min wash in PBS<br>7) 30 min 1:2000 NHS-Rhodamine (Fisher, PI-46406), in PBS w/ 1:20,000 H2O2<br>8) 2 x 5 min wash in PBS<br>9) 1 x 5 min incubation 1:1000 DAPI in PBS<br>10) 4 x 5 min wash in PBSStaining Recommendation: Incubate any additional primary antibodies separately from amplification Day 2 after adding the Rhodamine (step 7) and completing 3 subsequent PBS washes.
DOI: 10.17632/hdw92tf943
title: A Dataset of Subjective Frequency Estimates of the Words of the Peabody Vocabulary Test by English-Arabic Bilingual Speakers

description: Subjective frequency (i.e., familiarity) ratings and comprehension scores of the 488 printed words of the PPVT-5. Data were obtained from Arabic-English bilingual speakers (IELTS classification: competent users of the English language; age range: 18-15).
DOI: 10.15151/esrf-es-2120430037
title: FastScan - Fast Correlative Scanning SAXS and Visible Light Fluorescence Imaging of Biological Matter

description: The aim of this project is to combine highly complementary imaging methods – i.e., scanning small angle x-ray scattering, fast bright field microscopy and visible light fluorescence microscopy - for the structure determination of components inside biological cells, in particular the cytoskeleton and the nucleus. Importantly, the planned setup will in the future be applicable to a multitude of different sample types, from biological to soft matter and hard condensed matter. Our focus for the upcoming three years will be on (i) model cell lines with a pronounced keratin network, and (ii) biologically relevant heart muscle cells with and without desmin mutants that cause cardiomyopathy. The setup shall be made available to the user community after set-up and commissioning.
DOI: 10.17632/p3wf75ngkk
title: Data for: Natural Experiments in Leadership Research: An Introduction, Review, and Guidelines
DOI: 10.6084/m9.figshare.22048250.v2
title: The Crown Pearl V2: an improved genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758)

description: Contiguous assemblies are fundamental to decipher the exact composition of extant genomes. In molluscs, this task is considerably challenging owing to their large size, heterozygosity, and widespread content of repetitive content. Consequently, the usage of long-read sequencing technologies is fundamental to achieve high contiguity and quality. The first genome assembly of <em>Margaritifera margaritifera</em> (Linnaeus, 1758) (Mollusca: Bivalvia: Unionida), a culturally relevant, widespread, and highly threatened species of freshwater mussels, has been produced recently. However, the current genome is highly fragmented since the assembly relied solely on short-read approaches. To overcome this caveat, here, a new improved reference genome assembly is produced using a combination of PacBio CLR long reads and Illumina paired-end short reads. This novel genome assembly is 2.4 Gb long, organized into 1,700 scaffolds with a contig N50 length of 3.4Mbp. The <em>ab initio</em> gene prediction resulted in a total of 48,314 protein-coding genes. This new assembly represents a substantial improvement and is an essential resource for studying this species’ unique biological and evolutionary features that ultimately will help to promote its conservation.
DOI: 10.6084/m9.figshare.25709913.v1
title: Supplementary Online Data and code for coca morphometrics

description: This repository contains supplementary data and code pertaining to publication:<b>Morphometrics and phylogenomics of coca (</b><b><i>Erythroxylum</i></b><b> spp.) illuminate its reticulate evolution, with implications for taxonomy</b>10.1093/molbev/msae114Files included:coca_morpho_with_downsampling_molbev_2024.Rcoca.molbev.2024.RDataThese pertain to the morphometric analyses of leaf outlines obtained from digital herbarium specimens.<br><br><br>
DOI: 10.17632/h355nc7j7x
title: Exoskeletons: Contribution to Occupational Health and Safety

description: This document provides a review of the design and construction of exoskeletons, which have seen increased integration into company production processes as alternative means to enhance worker health and safety while improving work efficiency. A search was conducted in scientific databases related to industry, health, and medicine. Exoskeletons were categorized based on their general characteristics and areas of support on the human body. References for implementing exoskeletons based on specific work activities and recent advancements in the past five years are presented. The document highlights the diverse range of exoskeleton types, technologies, service types, and configurations available. This condensed information will serve as a foundational knowledge base for designers and medical professionals responsible for occupational health and safety across various industries worldwide.
DOI: 10.6084/m9.figshare.6643292.v1
title: Non-exclusive α-helices in (α+β)+(α/β) proteins

description: Dataset containing physical-chemical and strucutural descriptors for non-exclusive α-helices and its flanking regions.<br>Only α-helices from <b>(α+β)+(α/β) proteins</b> are eligible for this dataset.<br>Data is organized into sections. Each section begins with the following header: <b>length, pdb_name, chain_id, flag, position, [parameter]</b>.<br><b>length </b>is the number of amino acid residues comprising the α-helix.<br><b>flag </b>indicates the amino acid residue underlying region, namely: flanking region before the α-helix(<b>&lt;</b>); α-helix(<b>=</b>); flanking region after the α-helix (<b>&gt;</b>).<br><b>[parameter]</b>: paramater's value for the given amino acid residue. All parameters are extracted from the STING Database.
DOI: 10.17632/3zry3kfyf2
title: Formation of Secondary Nitroaromatic Compounds in Polluted Urban Environments

description: The relevant data  about our manuscript entitled "Formation of Secondary Nitroaromatic Compounds in Polluted Urban Environments".
DOI: 10.17632/5pdr3dd47y
title: Guruvayoorappan_Diatom dataset from the core NP06-16/41 GC2 from the Kongsfjorden, Svalbard [dataset]

description: Here, we present datasets of diatom relative abundance and a diatom-based sea surface temperature reconstruction from Kongsfjorden, Svalbard. The marine sediment core NP06-16/41 GC2 was recovered by the Norwegian R/V Lance using a gravity corer. The 454 cm long marine sediment core NP06-16/41 GC2 was recovered from the Kongsfjorden mouth (79 °1.15’N and 11 °19.27’E) during the cruise NP06-16 in August 2006, at 331m water depth. The sediment core section from 300 to 454 cm was used for diatom analysis. One extra sample of 1 cm thickness was taken between each 5 cm interval, increasing the number of samples upto 62, between the 300 to 454 cm section. Diatoms were analysed using standard procedures, including the identification and counting of a minimum of 300 diatom per sample, which allowed calculation of the percentage abundances of different species. These abundances were converted into estimates of sea surface temperature using the weight averaging partial least squares transfer function approach.
DOI: 10.6084/m9.figshare.27021244.v1
title: <b>Plants horizontally acquired multiple transposable elements during the conquest of land</b>

description: The intact TEs and ORFs in the genomes of Chlorokybus atmophyticus (Chlorokybophyceae), Klebsormidium nitens (Klebsormidiophyceae), Chara braunii (Charophyceae), Zygnema circumcarinatum (Zygnematophyceae), Marchantia polymorpha (liverworts), Physcomitrium patens (mosses) and Anthoceros agrestis (hornworts), the sequences of HTT-derived TEs, the ORF sequences of HTT-derived TEs, multiple sequence alignments of HTTs.
DOI: 10.6084/m9.figshare.28588382.v1
title: Genome annotation of Procypris rabaudi

description: Genome annotation of Procypris rabaudi
DOI: 10.17632/crhk97t7cy
title: Photosynthesis-irradiance curve in peatlands with a modulated-light skirt-chamber

description: This dataset includes 20 examples of photosynthesis-irradiance (PI) curves obtained from field measurements conducted at 20 distinct locations within a subantarctic peatland on Navarino Island, southern Chile (latitude -54.9°). Measurements were performed using a novel modulated-light skirt-chamber, specifically designed for characterizing photosynthetic responses under natural environmental conditions. Each PI curve represents carbon assimilation rates measured at multiple controlled irradiance levels, generated by adjusting screens to modulate incoming natural light.
DOI: 10.6084/m9.figshare.13233353.v4
title: Han R. et al. 2020.rar

description: Extract the compressed file and there are two files:<br>The file of 'statistical data' includes the database that was used to statistical analysis;<br>The file of 'graphic data' includes all values used to build graphs, including means, standard error of mean and other measures reported.
DOI: 10.6084/m9.figshare.27200883.v1
title: Geographical Discrepancy in Medical Care Access Among Children, Adolescents, and Young Adults With Cancer in Japan, 2016–2019

description: OverviewThis dataset provides comprehensive information on the origin–destination (OD) relationship between patients' residences and hospitals at the prefecture levels for children, adolescents, and young adults with cancer in Japan from 2016 to 2019.Dataset ContentsThe dataset includes one component:Data_1. Cross-tabulation of patient residence and hospital location by prefectureData source and methodsWe obtained the data from the National Cancer Registry in accordance with the Cancer Registration Promotion Act in Japan (Act No. 111 of December 13, 2013), and independently analyzed those data, with the results presented.All analyses were performed for total patients and stratified as follows:Eight diagnostic groups<sup>1</sup>: lymphohematopoietic cancer (ICCC-3: I/II), brain tumors (III), neuroblastoma (IV), retinoblastoma (V), renal tumors (VI), hepatic tumors (VII), bone tumors/soft tissue sarcomas (VIII/IX), germ cell and gonadal tumors (X).Four age groups: 0–14 years, 15–19 years, 20–29 years, and 30–39 yearsFive hospital groups: initial diagnosis, diagnostic, invasive treatment, radiotherapy, and chemotherapy.<br><sup>1</sup> The Roman numerals in parentheses indicate the major diagnostic group numbers in the International Classification of Childhood Cancer, Third edition (ICCC-3).Steliarova-Foucher E, Stiller C, Lacour B, Kaatsch P. International Classification of Childhood Cancer, third edition. <b><i>Cancer</i></b>. 2005;103(7):1457-1467. https://doi.org/10.1002/cncr.20910.Additional InformationFor a detailed description of the study and findings, please refer to the manuscript at https://doi.org/10.1111/cas.70069.Contact InformationPlease contact the following for inquiries regarding this dataset:Anna Tsutsui, Department of Medical Statistics, Toho University, Tokyo, Japan.anna.tsutsui(at)med.toho-u.ac.jpCitationIf you use this dataset in your research, please cite the following:Anna Tsutsui, Yoshitaka Murakami, Takako Fujimaki, Masayuki Endo, Yuko Ohno. Geographical Discrepancy in Medical Care Access Among Children, Adolescents, and Young Adults With Cancer in Japan, 2016–2019. <b><i>Cancer Science</i></b>. https://doi.org/10.1111/cas.70069.