cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.se9rxc
title: Occurrence Download

description: A dataset containing 37288 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 {
 "or" : [
 "TaxonKey is Chaenorhinum grandiflorum subsp. carthaginense (Pau) C.Benedí González",
 "TaxonKey is Arabis alpina L.",
 "TaxonKey is Chaenorhinum rupestre (Guss.) Speta",
 "TaxonKey is Centaurea mariana Nyman",
 "TaxonKey is Centaurea saxicola Lag.",
 "TaxonKey is Lactuca perennis subsp. granatensis Charpin & Fern.Casas",
 "TaxonKey is Bupleurum tenuissimum L.",
 "TaxonKey is Tussilago farfara L.",
 "TaxonKey is Allium melananthum Coincy",
 "TaxonKey is Merendera filifolia Cambess.",
 "TaxonKey is Polygonatum odoratum (Mill.) Druce",
 "TaxonKey is Castellia tuberculosa (Moris) Bor",
 "TaxonKey is Centaurea toletana Boiss. & Reut.",
 "TaxonKey is Cheilanthes hispanica Mett.",
 "TaxonKey is Ophrys ×castellana Devillers-Tersch. & Devillers",
 "TaxonKey is Cheilanthes tinaei Tod.",
 "TaxonKey is Ophrys incubacea Bianca ex Tod., 1842",
 "TaxonKey is Narcissus tortifolius Fern.Casas",
 "TaxonKey is Cleonia lusitanica (L.) L.",
 "TaxonKey is Orchis collina Banks & Sol. ex Russell",
 "TaxonKey is Crypsis schoenoides (L.) Lam.",
 "TaxonKey is Damasonium polyspermum Coss.",
 "TaxonKey is Dianthus armeria L.",
 "TaxonKey is Orchis ustulata L.",
 "TaxonKey is Orobanche schultzii Mutel",
 "TaxonKey is Dryopteris filix-mas (L.) Schott",
 "TaxonKey is Parapholis marginata Runemark",
 "TaxonKey is Erophaca baetica (L.) Boiss.",
 "TaxonKey is Eryngium tenue Lam.",
 "TaxonKey is Phleum arenarium L.",
 "TaxonKey is Dactylorhiza elata Poiret, 1962",
 "TaxonKey is Pilosella macrantha (Ten.) F.W.Schultz & Sch.Bip.",
 "TaxonKey is Serapias lingua L.",
 "TaxonKey is Serapias parviflora Parl.",
 "TaxonKey is Cheilanthes maderensis Lowe",
 "TaxonKey is Cystopteris fragilis subsp. huteri (Hausm. ex Milde) Prada & Salvo",
 "TaxonKey is Festuca nevadensis (Hack.) Markgr.-Dann.",
 "TaxonKey is Polygonum amphibium",
 "TaxonKey is Ruscus hypophyllum L.",
 "TaxonKey is Aristolochia baetica L.",
 "TaxonKey is Saponaria officinalis L.",
 "TaxonKey is Festuca triflora Desf.",
 "TaxonKey is Saxifraga almeriensis Willk. ex P.Vargas",
 "TaxonKey is Frankenia thymifolia Desf.",
 "TaxonKey is Saxifraga carpetana Boiss. & Reut.",
 "TaxonKey is Genista tricuspidata Desf.",
 "TaxonKey is Saxifraga dichotoma Willd. ex Sternb.",
 "TaxonKey is Anemone palmata L.",
 "TaxonKey is Aquilegia vulgaris L.",
 "TaxonKey is Seseli montanum subsp. granatense (Willk.) C.Pardo"
 ]
 }
 ]
}

 The dataset includes 37288 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002581-150410134957023/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pdkmcl
title: Occurrence Download

description: A dataset containing 982 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Phyllocladus toatoa Molloy",
 "DecimalLatitude is greater than or equal to -90",
 "DecimalLongitude is greater than or equal to -180"
 ]
}

 The dataset includes 982 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026101-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cgzfgs
title: Occurrence Download

description: A dataset containing 2266 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Eupsittula cactorum (Kuhl, 1820)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2266 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034527-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rc8cvr
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Peromyscus schmidlyi Bradley, 2004"
 ]
}

 The dataset includes 72 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002581-150422101436696/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.im4hqe
title: Occurrence Download

description: A dataset containing 399 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Quercus conspersa Benth.",
 "Country is Mexico"
 ]
}

 The dataset includes 399 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002581-150528172251762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xd98v9
title: Occurrence Download

description: A dataset containing 519 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bombus rupestris (Fabricius, 1793)",
 "Country is one of (Denmark)"
 ]
}

 The dataset includes 519 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060503-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.txqcwi
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tillandsia concolor L.B.Sm."
 ]
}

 The dataset includes 97 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002581-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uutt7s
title: Occurrence Download

description: A dataset containing 12497 species occurrences available in GBIF matching the query:
{
 "IucnRedListCategory" : [
 "is EW"
 ]
}

 The dataset includes 12497 records from 534 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012431-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q82s64
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Hedyotis fluviatilis (C.N.Forbes) Fosberg)"
 ]
}

 The dataset includes 41 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108899-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26578189
title: The complete chloroplast genome of <i>rhododendron williamsianum</i> (ericaceae)

description: <i>Rhododendron williamsianum</i> Rehder & E. H. Wilson 1913, is a plant with important horticultural value. Here we report its chloroplast genome. The total length of the chloroplast genome was 205,424 bp, with a GC content of 35.8%. It consisted of a 107,968 bp large single copy, a 2606 bp small single copy, and a pair of 47,425 bp inverted repeats separating them. Within the chloroplast genome, there were a total of 110 unique genes, which included 76 protein-coding genes, 4 rRNA genes, and 30 tRNA genes. Our phylogenetic analyses indicated that <i>R. williamsianum</i> was closely genetically related to <i>R. sutchuenense</i> and <i>R. jingangshanicum</i>. The findings from this study not only contribute to the genetic database of <i>Rhododendron</i> plants but also have implications for evolutionary research within the family Ericaceae.
DOI: 10.6084/m9.figshare.26578189.v1
title: The complete chloroplast genome of <i>rhododendron williamsianum</i> (ericaceae)

description: <i>Rhododendron williamsianum</i> Rehder & E. H. Wilson 1913, is a plant with important horticultural value. Here we report its chloroplast genome. The total length of the chloroplast genome was 205,424 bp, with a GC content of 35.8%. It consisted of a 107,968 bp large single copy, a 2606 bp small single copy, and a pair of 47,425 bp inverted repeats separating them. Within the chloroplast genome, there were a total of 110 unique genes, which included 76 protein-coding genes, 4 rRNA genes, and 30 tRNA genes. Our phylogenetic analyses indicated that <i>R. williamsianum</i> was closely genetically related to <i>R. sutchuenense</i> and <i>R. jingangshanicum</i>. The findings from this study not only contribute to the genetic database of <i>Rhododendron</i> plants but also have implications for evolutionary research within the family Ericaceae.
DOI: 10.6084/m9.figshare.26779706
title: The chloroplast genome structure of <i>Turpinia affinis</i> (Staphyleaceae)

description: The species <i>Turpinia affinis</i> Merr. et Perry 1941 is widely distributed throughout southwestern China. In folk medicine, this species is often used as a substitute for the Chinese medicine Turpiniae Folium, whose legal origin is <i>T. arguta</i> (Lindl.) Seem. In order to ascertain the relationship between these two species, the chloroplast genome of <i>T. affinis</i> was aequenced and assembled, resulting in a typical quadripartite molecule with a length of 160,769 base pairs and an overall GC content of 37.3%. Additionally, 131 genes were annotated, comprising 86 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. A maximum likelihood analysis demonstrated that the <i>Turpinia</i> species form a monophyletic clade, with <i>T. affinis</i> positioned as the sister taxon to the clade comprising the remaining species within the genus. This outcome enhances the genomic data for the genus <i>Turpinia</i> and will contribute to further investigations into phylogenetics, evolution, and sustainable resource utilization.
DOI: 10.6084/m9.figshare.26779706.v1
title: The chloroplast genome structure of <i>Turpinia affinis</i> (Staphyleaceae)

description: The species <i>Turpinia affinis</i> Merr. et Perry 1941 is widely distributed throughout southwestern China. In folk medicine, this species is often used as a substitute for the Chinese medicine Turpiniae Folium, whose legal origin is <i>T. arguta</i> (Lindl.) Seem. In order to ascertain the relationship between these two species, the chloroplast genome of <i>T. affinis</i> was aequenced and assembled, resulting in a typical quadripartite molecule with a length of 160,769 base pairs and an overall GC content of 37.3%. Additionally, 131 genes were annotated, comprising 86 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. A maximum likelihood analysis demonstrated that the <i>Turpinia</i> species form a monophyletic clade, with <i>T. affinis</i> positioned as the sister taxon to the clade comprising the remaining species within the genus. This outcome enhances the genomic data for the genus <i>Turpinia</i> and will contribute to further investigations into phylogenetics, evolution, and sustainable resource utilization.
DOI: 10.6084/m9.figshare.26798126
title: The complete chloroplast genome of <i>Camellia flava</i> (Pitard) Sealy, a golden camellia of Vietnam

description: <i>Camellia flava</i> (Pit.) Sealy 1949 is a rare and precious species with golden flowers, which hold important ornamental and breeding values. In this study, the complete chloroplast genome of <i>C. flava</i> is reported for the first time. The chloroplast genome exhibits a typical quadripartite structure with a total length of 156,670 bp and a GC content of 37.32%, including a large single-copy region (86,250 bp), a small single-copy region (18,292 bp), and a pair of inverted repeat regions (26,064 bp). A total of 133 genes, including 88 protein-coding genes, 37 tRNA genes, and 8 rRNA genes were annotated. The phylogenetic analysis revealed a close relationship between <i>C. flava</i> and <i>C. tamdaoensis</i>. The chloroplast genome sequence of <i>C. flava</i> serves as a valuable resource for further breeding research and genetic phylogenetic studies.
DOI: 10.6084/m9.figshare.26798126.v1
title: The complete chloroplast genome of <i>Camellia flava</i> (Pitard) Sealy, a golden camellia of Vietnam

description: <i>Camellia flava</i> (Pit.) Sealy 1949 is a rare and precious species with golden flowers, which hold important ornamental and breeding values. In this study, the complete chloroplast genome of <i>C. flava</i> is reported for the first time. The chloroplast genome exhibits a typical quadripartite structure with a total length of 156,670 bp and a GC content of 37.32%, including a large single-copy region (86,250 bp), a small single-copy region (18,292 bp), and a pair of inverted repeat regions (26,064 bp). A total of 133 genes, including 88 protein-coding genes, 37 tRNA genes, and 8 rRNA genes were annotated. The phylogenetic analysis revealed a close relationship between <i>C. flava</i> and <i>C. tamdaoensis</i>. The chloroplast genome sequence of <i>C. flava</i> serves as a valuable resource for further breeding research and genetic phylogenetic studies.
DOI: 10.6084/m9.figshare.26878561
title: The complete mitochondrial genome and phylogenetic analysis of <i>Cyanopterus ninghais</i> (Hymenoptera: Braconidae)

description: <i>Cyanopterus ninghais</i> is an important gregarious ectoparasitoid during the larval stage of <i>Monochamus alternatus</i>, a key vector for pine wilt disease in Asia. In this study, the complete mitochondrial genome of <i>C. ninghais</i> was sequenced and analyzed. The mitochondrial genome of <i>C. ninghais</i> is 15,386 bp in length, comprising 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), and 2 ribosomal RNA genes (rRNAs). The nucleotide composition is 41.32% A, 8.29% G, 6.06% C, and 44.33% T. Phylogenetic trees of Braconidae were constructed using 13 PCG sequences <i>via</i> Bayesian inference (BI) and maximum likelihood (ML) analyses to determine their phylogenetic position. Both ML and BI analyses revealed that <i>C. ninghais</i> is closely related to <i>Euurobracon yokahamae</i>, <i>Virgulibracon endoxylaphagus</i>, and <i>Habrobracon hebetor</i>.
DOI: 10.6084/m9.figshare.26878561.v1
title: The complete mitochondrial genome and phylogenetic analysis of <i>Cyanopterus ninghais</i> (Hymenoptera: Braconidae)

description: <i>Cyanopterus ninghais</i> is an important gregarious ectoparasitoid during the larval stage of <i>Monochamus alternatus</i>, a key vector for pine wilt disease in Asia. In this study, the complete mitochondrial genome of <i>C. ninghais</i> was sequenced and analyzed. The mitochondrial genome of <i>C. ninghais</i> is 15,386 bp in length, comprising 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), and 2 ribosomal RNA genes (rRNAs). The nucleotide composition is 41.32% A, 8.29% G, 6.06% C, and 44.33% T. Phylogenetic trees of Braconidae were constructed using 13 PCG sequences <i>via</i> Bayesian inference (BI) and maximum likelihood (ML) analyses to determine their phylogenetic position. Both ML and BI analyses revealed that <i>C. ninghais</i> is closely related to <i>Euurobracon yokahamae</i>, <i>Virgulibracon endoxylaphagus</i>, and <i>Habrobracon hebetor</i>.
DOI: 10.6084/m9.figshare.26412099
title: The complete chloroplast genome sequence of <i>Lemna turionifera</i> (Araceae)

description: <i>Lemna turionifera</i> is native to North America and northern Asia, with significant potential for industrial wastewater remediation. The complete nucleotide sequence of the <i>L. turionifera</i> chloroplast genome (cpDNA) was determined. The cpDNA is a circular molecule of 166,606 bp and containing a pair of inverted repeats (IRs) measuting 31,663 bp each. These IRs are flanked by a small single-copy region of 13,542 bp and a large single-copy region of 89,738 bp. The chloroplast genome of <i>L. turionifera</i> consisted of 112 unique genes, including 78 protein-encoding genes, 30 tRNA genes, and four rRNA genes. The phylogenetic analysis utilizing cpDNA provided a well-supported resolution of the relationships among subfamilies within the Araceae family. Our findings indicated a close relationship between <i>L. turionifera</i> and a clade consisting of <i>L. minor</i>, <i>L. japonica</i>, and <i>L. gibba</i>. The availability of the complete chloroplast genome sequence of <i>L. turionifera</i> presents valuable data for future phylogenetic investigations within the Lemnaceae family.
DOI: 10.6084/m9.figshare.26412099.v1
title: The complete chloroplast genome sequence of <i>Lemna turionifera</i> (Araceae)

description: <i>Lemna turionifera</i> is native to North America and northern Asia, with significant potential for industrial wastewater remediation. The complete nucleotide sequence of the <i>L. turionifera</i> chloroplast genome (cpDNA) was determined. The cpDNA is a circular molecule of 166,606 bp and containing a pair of inverted repeats (IRs) measuting 31,663 bp each. These IRs are flanked by a small single-copy region of 13,542 bp and a large single-copy region of 89,738 bp. The chloroplast genome of <i>L. turionifera</i> consisted of 112 unique genes, including 78 protein-encoding genes, 30 tRNA genes, and four rRNA genes. The phylogenetic analysis utilizing cpDNA provided a well-supported resolution of the relationships among subfamilies within the Araceae family. Our findings indicated a close relationship between <i>L. turionifera</i> and a clade consisting of <i>L. minor</i>, <i>L. japonica</i>, and <i>L. gibba</i>. The availability of the complete chloroplast genome sequence of <i>L. turionifera</i> presents valuable data for future phylogenetic investigations within the Lemnaceae family.
DOI: 10.6084/m9.figshare.26412093
title: Characterizing the complete mitogenome of <i>Odontothrips phaseoli</i> (Thysanoptera: Thripidae) and its mitochondrial phylogeny

description: Described originally from Heilongjiang, China, <i>Odontothrips phaseoli</i> is a potential pest of threatening bean plant in northern China. The complete mitochondrial genome of <i>O. phaseoli</i> was sequenced and assembled, with a total length of 15,540 bp. Within this genome, 37 genes have been identified: 13 PCGs, 22 tRNAs, two rRNAs, and two putative control regions. Most PCGs terminate with TAA, while four genes (<i>atp8</i>, <i>nad1</i>, <i>nad2</i> and <i>nad4</i>) use an incomplete ‘T’ and <i>nad6</i> employs TAG as the stop codon. Compared to the mitogenome of the ancestral insect, <i>O. phaseoli</i> displays significant gene rearrangement. However, it retains three conserved gene blocks in common with its related species, <i>Megalurothrips usitatus</i>, both of which belong to the <i>Megalurothrips</i> genus-group. The phylogenetic tree, constructed based on the entire mitogenome dataset of all thrips species available in NCBI, shows that the two species cluster closely together. This alignment might underscore the close link between gene arrangements and the phylogeny relationships.
DOI: 10.6084/m9.figshare.26578180
title: The complete chloroplast genome of <i>Swertia davidii</i> (gentianaceae) and its phylogenetic analysis

description: To elucidate the genetic information and evolutionary relationships of <i>Swertia</i>, we initiated the sequencing of the complete chloroplast genome of <i>Swertia davidii</i> Franch. 1888, complemented by comparative analyses with closely related species. The chloroplast genome of <i>S. davidii</i> was 153,516 bp in length and exhibited a typical quadripartite structure. It contained two regions with Inverted Repeat lengths of 25,767 bp, located between one Large Single-Copy region (83,617 bp) and one Short Single-Copy region (18,365 bp). The chloroplast genome of <i>S. davidii</i> encoded 132 genes, including 87 protein-coding genes, 37 transfer RNA genes, and 8 ribosomal RNA genes. The overall GC content was 38.15%. Maximum likelihood phylogenetic analysis of <i>Swertia</i> based on 26 available plastomes showed a close relationship between <i>S. davidii</i> and <i>S. kouitchensi</i>. This study will contribute to the genetic preservation of the species and the phylogenetic study of <i>Swertia</i>.
DOI: 10.6084/m9.figshare.26578180.v1
title: The complete chloroplast genome of <i>Swertia davidii</i> (gentianaceae) and its phylogenetic analysis

description: To elucidate the genetic information and evolutionary relationships of <i>Swertia</i>, we initiated the sequencing of the complete chloroplast genome of <i>Swertia davidii</i> Franch. 1888, complemented by comparative analyses with closely related species. The chloroplast genome of <i>S. davidii</i> was 153,516 bp in length and exhibited a typical quadripartite structure. It contained two regions with Inverted Repeat lengths of 25,767 bp, located between one Large Single-Copy region (83,617 bp) and one Short Single-Copy region (18,365 bp). The chloroplast genome of <i>S. davidii</i> encoded 132 genes, including 87 protein-coding genes, 37 transfer RNA genes, and 8 ribosomal RNA genes. The overall GC content was 38.15%. Maximum likelihood phylogenetic analysis of <i>Swertia</i> based on 26 available plastomes showed a close relationship between <i>S. davidii</i> and <i>S. kouitchensi</i>. This study will contribute to the genetic preservation of the species and the phylogenetic study of <i>Swertia</i>.
DOI: 10.6084/m9.figshare.26412093.v1
title: Characterizing the complete mitogenome of <i>Odontothrips phaseoli</i> (Thysanoptera: Thripidae) and its mitochondrial phylogeny

description: Described originally from Heilongjiang, China, <i>Odontothrips phaseoli</i> is a potential pest of threatening bean plant in northern China. The complete mitochondrial genome of <i>O. phaseoli</i> was sequenced and assembled, with a total length of 15,540 bp. Within this genome, 37 genes have been identified: 13 PCGs, 22 tRNAs, two rRNAs, and two putative control regions. Most PCGs terminate with TAA, while four genes (<i>atp8</i>, <i>nad1</i>, <i>nad2</i> and <i>nad4</i>) use an incomplete ‘T’ and <i>nad6</i> employs TAG as the stop codon. Compared to the mitogenome of the ancestral insect, <i>O. phaseoli</i> displays significant gene rearrangement. However, it retains three conserved gene blocks in common with its related species, <i>Megalurothrips usitatus</i>, both of which belong to the <i>Megalurothrips</i> genus-group. The phylogenetic tree, constructed based on the entire mitogenome dataset of all thrips species available in NCBI, shows that the two species cluster closely together. This alignment might underscore the close link between gene arrangements and the phylogeny relationships.
DOI: 10.6084/m9.figshare.26780693.v1
title: Two complete mitochondrial genomes of <i>Boulenophrys</i> (Anura: Megophryidae: Megophryinae): characteristics and phylogenetic implications

description: The Chinese horned toads, <i>Boulenophrys boettgeri</i> (Boulenger, 1899) and <i>Boulenophrys kuatunensis</i> (Pope, 1929), are two captivating species within the family Megophryidae, which inhabit the mountainous streams in the Eastern of China. In this study, two new complete mitochondrial genomes of <i>B. boettgeri</i> and <i>B. kuatunensis</i> were sequenced, assembled, and annotated using next-generation sequencing. The length of mitochondrial genomes of <i>B. boettgeri</i> and <i>B. kuatunensis</i> was 16,597 and 17,921 bp, respectively, with both containing 13 protein coding genes, 22 tRNA genes, two rRNA genes, and one putative control region. Phylogenetic relationships based on protein-coding mitochondrial genes showed that the two <i>Boulenophrys</i> species formed a cluster with other <i>Boulenophrys</i> species. The two new sequences provide valuable insights into the mitochondrial genomes of these two species, offering important data for understanding the phylogenetic relationships of the genus <i>Boulenophrys</i>.