cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19518042.v1
title: Additional file 3 of Effects of caloric restriction on the gut microbiome are linked with immune senescence

description: Additional file 2. The three supplementary Excel files, for colon (colon_cca_xlsx), spleen (spleen_cca_xlsx), and liver(liver_cca_xlsx), comprise each four spreadsheets: The sheets “corr.matrix” and “corr.fdr” contain estimated coefficients of the latent cross-correlation matrix (as shown in Fig. 6 and Supplementary Figure 5 heatmaps) and corresponding FDR-adjusted P-values, respectively. The sheet “asv.cca” contains for all ASVs (with the same order as in the correlation matrix) FDR-adjusted P-values and log-fold change values (columns C, D) from DESeq2 differential abundance testing (as shown in heatmap Fig. 1 C), the corresponding taxonomy table including seven taxonomic ranks (columns E-K), taxa labels used for heatmaps (column L) and two columns indicating the top (upper and lower) ASVs that were highlighted in correlation heatmap and circular chord diagrams (column M) and that were selected by sparse canonical correlation analysis using the Bayesian information criterion (column N), with sparse coefficients’ weights provided in column O. The sheet “imm.cca” contains for all immunological parameters (with the same order as in the correlation matrix) that were assessed in a given organ, FDR-adjusted P-values from GLMM and non-parametric (Wilcoxon-Mann-Whitney) differential abundance testing (columns C, D) between AdLib and CalRes groups. Columns E indicates type of parameter, i.e., whether absolute cell counts, or cell frequencies were determined. Column F denotes which cell population served as input for cluster-based analyses or was manually gated. Columns G – I provide cell subset IDs including prepended cluster numbers, manually annotated population names, and differentiation state. Columns J – L contain labels as displayed in correlation heatmap and circular chord diagrams for subset name, differentiation/antigen-experience, and lineage membership, respectively. Columns M – O indicate the top left and right immune parameters in the correlation heatmap, those selected by sparse canonical correlation analysis using the Bayesian information criterion, and sparse coefficients’ weights, respectively.
DOI: 10.6084/m9.figshare.19518042
title: Additional file 3 of Effects of caloric restriction on the gut microbiome are linked with immune senescence

description: Additional file 2. The three supplementary Excel files, for colon (colon_cca_xlsx), spleen (spleen_cca_xlsx), and liver(liver_cca_xlsx), comprise each four spreadsheets: The sheets “corr.matrix” and “corr.fdr” contain estimated coefficients of the latent cross-correlation matrix (as shown in Fig. 6 and Supplementary Figure 5 heatmaps) and corresponding FDR-adjusted P-values, respectively. The sheet “asv.cca” contains for all ASVs (with the same order as in the correlation matrix) FDR-adjusted P-values and log-fold change values (columns C, D) from DESeq2 differential abundance testing (as shown in heatmap Fig. 1 C), the corresponding taxonomy table including seven taxonomic ranks (columns E-K), taxa labels used for heatmaps (column L) and two columns indicating the top (upper and lower) ASVs that were highlighted in correlation heatmap and circular chord diagrams (column M) and that were selected by sparse canonical correlation analysis using the Bayesian information criterion (column N), with sparse coefficients’ weights provided in column O. The sheet “imm.cca” contains for all immunological parameters (with the same order as in the correlation matrix) that were assessed in a given organ, FDR-adjusted P-values from GLMM and non-parametric (Wilcoxon-Mann-Whitney) differential abundance testing (columns C, D) between AdLib and CalRes groups. Columns E indicates type of parameter, i.e., whether absolute cell counts, or cell frequencies were determined. Column F denotes which cell population served as input for cluster-based analyses or was manually gated. Columns G – I provide cell subset IDs including prepended cluster numbers, manually annotated population names, and differentiation state. Columns J – L contain labels as displayed in correlation heatmap and circular chord diagrams for subset name, differentiation/antigen-experience, and lineage membership, respectively. Columns M – O indicate the top left and right immune parameters in the correlation heatmap, those selected by sparse canonical correlation analysis using the Bayesian information criterion, and sparse coefficients’ weights, respectively.
DOI: 10.5281/zenodo.6413686
title: IMT Vault

description: Examples with interlinear morpheme translation from LangSci books
DOI: 10.5281/zenodo.6413685
title: IMT Vault

description: Examples with interlinear morpheme translation from LangSci books
DOI: 10.6084/m9.figshare.19518133.v1
title: Tonnages, durations of ore formation, Sr/Y values and depths of formation of porphyry Cu-Au deposits

description: This table provides a summary of Cu and Au endowments of ~120 porphyry Cu-Au deposits, of the duration of the ore-forming processes where data are available, of the average Sr/Y values of associated magmatic rocks, and of the depth of formation of the porphyry Cu-Au deposits<br>
DOI: 10.5281/zenodo.6413717
title: input files for " Martini bead form factors for nucleic-acids and their application in the refinement of protein/nucleic-acid complexes against SAXS data".

description: input files for " Martini bead form factors for nucleic-acids and their application in the refinement of protein/nucleic-acid complexes against SAXS data", cf plumed-nest
DOI: 10.5281/zenodo.6413744
title: input files for " Martini bead form factors for nucleic-acids and their application in the refinement of protein/nucleic-acid complexes against SAXS data".

description: input files for " Martini bead form factors for nucleic-acids and their application in the refinement of protein/nucleic-acid complexes against SAXS data", cf plumed-nest
DOI: 10.5281/zenodo.6298961
title: Assessing the efficiency of thermochemical pressurization in the Jiweishan rockslide

description: This is the dataset for manuscript, titled “<strong>Assessing the efficiency of thermochemical pressurization in the Jiweishan rockslide</strong>”. The manuscript was authored by Yu Deng, Xuanmei Fan, Gianvito Scaringi, Dongpo Wang, and Siming He.
DOI: 10.5281/zenodo.4154656
title: input files for " Martini bead form factors for nucleic-acids and their application in the refinement of protein/nucleic-acid complexes against SAXS data".

description: input files for " Martini bead form factors for nucleic-acids and their application in the refinement of protein/nucleic-acid complexes against SAXS data", cf plumed-nest
DOI: 10.5281/zenodo.6298960
title: Assessing the efficiency of thermochemical pressurization in the Jiweishan rockslide

description: This is the dataset for manuscript, titled “<strong>Assessing the efficiency of thermochemical pressurization in the Jiweishan rockslide</strong>”. The manuscript was authored by Yu Deng, Xuanmei Fan, Gianvito Scaringi, Dongpo Wang, and Siming He.
DOI: 10.23728/b2share.418936e2c2084a5f9c738eb2ec41ba72
title: A syntax/semantic confusion amidst our increasing science data-to-knowledge successes

description: Computers have increased the binding between science data and knowledge. However, what current computers can and can’t do is often unclear. This distinction can be clarified by positing that computers are only syntactic engines and that humans are the only semantic engines. It will be asserted that computers can create know-how and know-of knowledge. Although com-puters are very useful is helping humans gain know-that knowledge, but they cannot create know-that knowledge.
DOI: 10.18112/openneuro.ds004091.v1.0.0
title: GAZE PRF
DOI: 10.25345/c5qf8jp3k
title: MassIVE MSV000089199 - GNPS_Plasma samples of 83 patients infected with SARS-CoV-2 recruited from CHU Grenoble Alpes between March and September 2020
title: Untargeted metabolomics analysis of plasma samples from 83 patients infected with SARS-CoV-2 and hospitalized at the University Hospital of Grenoble Alpes (France) between March and September 2020.
DOI: 10.6084/m9.figshare.19517041.v4
title: Databset for Efficient 3-D forward modeling and mixed norm inversion of the gravity gradients with application to the Vinton salt dome

description: Inversion of the gravity gradient data is widely adopted to construct 3-D density models. However, this inversion usually suffers from non-uniqueness and has a limited resolution in depth. This study introduces an effective inversion method for interpreting gravity gradient data based on the mixed L1 and L2 norm regularization. We also apply an efficient forward modeling algorithm to the inversion, which has many time-consuming iterations. Equivalence relations in the sensitivity matrix are employed to reduce the storage and computation time. In addition, a 2-D discrete convolution algorithm is used to reduce the repetitive calculation in the forward modeling. The numerical examples demonstrate that the computational efficiency is increased by about three orders of magnitude compared with the traditional forward method. Furthermore, compared to traditional single-norm inversion, the vertical gradient inversion with the mixed L1 and L2 norm regularization has a higher depth resolution. Finally, we apply the method to the inversion of the airborne gravity gradiometry data over the Vinton Dome, southern Louisiana.
DOI: 10.6084/m9.figshare.19517041.v3
title: Databset for Efficient 3-D forward modeling and mixed norm inversion of the gravity gradients with application to the Vinton salt dome

description: Inversion of the gravity gradient data is widely adopted to construct 3-D density models. However, this inversion usually suffers from non-uniqueness and has a limited resolution in depth. This study introduces an effective inversion method for interpreting gravity gradient data based on the mixed L1 and L2 norm regularization. We also apply an efficient forward modeling algorithm to the inversion, which has many time-consuming iterations. Equivalence relations in the sensitivity matrix are employed to reduce the storage and computation time. In addition, a 2-D discrete convolution algorithm is used to reduce the repetitive calculation in the forward modeling. The numerical examples demonstrate that the computational efficiency is increased by about three orders of magnitude compared with the traditional forward method. Furthermore, compared to traditional single-norm inversion, the vertical gradient inversion with the mixed L1 and L2 norm regularization has a higher depth resolution. Finally, we apply the method to the inversion of the airborne gravity gradiometry data over the Vinton Dome, southern Louisiana.
DOI: 10.5281/zenodo.6413804
title: French verbal frequencies in the Open Subtitle corpus

description: This repository provides frequencies for French verbal paradigm cells in the French Open Subtitles Corpus.
description: This work was partially funded by a British Academy International Newton Fellowship (reference: NIF23\100218)
DOI: 10.5281/zenodo.6412875
title: French verbal frequencies in the Open Subtitle corpus

description: This repository provides frequencies for French verbal paradigm cells in the French Open Subtitles Corpus.
description: This work was partially funded by a British Academy International Newton Fellowship (reference: NIF23\100218)
DOI: 10.25345/c5kp7tv9t
title: MassIVE MSV000089200 - UPLC-MS/MS data of Sarcandra hainanensis extract
title: Sarcandra hainanensis is an important medicinal plant for many diseases. Lindenane sesquiterpenoid is class of characteristic secondary metabolites in Sarcandra hainanensis. This dataset is the UPLC-MS/MS data of Sarcandra hainanensis extract for discovering the target lindenane sesquiterpenoids.
DOI: 10.5281/zenodo.6020696
title: Dataset for article "Fatigue crack initiation and propagation relation at notched specimens with welded joint characteristics"

description: The dataset presents is a collection of fatigue test data obtained from artificially notched specimens with weld characteristics. The data was used to investigate the relation between crack initiation and propagation in welded joints of different notch acuity (different radii and opening angle) by excluding the effect of geometrical variation along weld seams. The experiments show that the investigated relationship basically depends on the notch acuity, the load level and the stress ratio. For detailed information about the tests and the assessment please refer to the article: Braun M, Fischer C, Baumgartner J, Hecht M, Varfolomeev I. Fatigue Crack Initiation and Propagation Relation of Notched Specimens with Welded Joint Characteristics. <em>Metals</em>. 2022; 12(4):615. https://doi.org/10.3390/met12040615
DOI: 10.5281/zenodo.6020695
title: Dataset for article "Fatigue crack initiation and propagation relation at notched specimens with welded joint characteristics"

description: The dataset presents is a collection of fatigue test data obtained from artificially notched specimens with weld characteristics. The data was used to investigate the relation between crack initiation and propagation in welded joints of different notch acuity (different radii and opening angle) by excluding the effect of geometrical variation along weld seams. The experiments show that the investigated relationship basically depends on the notch acuity, the load level and the stress ratio. For detailed information about the tests and the assessment please refer to the article: Braun M, Fischer C, Baumgartner J, Hecht M, Varfolomeev I. Fatigue Crack Initiation and Propagation Relation of Notched Specimens with Welded Joint Characteristics. <em>Metals</em>. 2022; 12(4):615. https://doi.org/10.3390/met12040615
DOI: 10.6084/m9.figshare.19518181
title: Rickettsiales: rvhB7 sequences

description: results of the tblastN searches in selected genomes and the corresponding sequence alignment.<br>
DOI: 10.6084/m9.figshare.19518181.v1
title: Rickettsiales: rvhB7 sequences

description: results of the tblastN searches in selected genomes and the corresponding sequence alignment.<br>
DOI: 10.5281/zenodo.6379288
title: CG molecular dynamics simulations. Supporting data for "Improving Martini 3 for Disordered and Multidomain Proteins".

description: <pre>Coarse-grained molecular dynamics simulations with Martini 3 with varying rescaling of protein-water interactions. Supporting data for "Improving Martini 3 for Disordered and Multidomain Proteins".</pre>
DOI: 10.5281/zenodo.5862905
title: A Social Network of the Prosopography of the Neo-Assyrian Empire

description: The data used for creating "A Social Network of the Prosopography of the Neo-Assyrian Empire" The networks were created from the text and pdf file versions of the Prosopography of the Neo-Assyrian Empire (PNA). There are two different networks created from the same data. In the two-mode network, persons are connected to the texts in which they are attested. The one-mode network connects two persons if they are attested in the same document. In order to study and visualise the networks, it is sufficient to download the folder Networks.zip. The other folders in this repository contain more in-depth explanations of the procedure of creating the networks, the normalization lists used for that, and the output of different stages of the procedure. The dataset has also been described in Jauhiainen, H., & Alstola, T. (2022). <em>A Social Network of the Prosopography of the Neo-Assyrian Empire</em>. <em>Journal of Open Humanities Data</em>, <em>8</em>, 8. DOI: http://doi.org/10.5334/johd.74. For the reasons of copyright, we are not able to publish the data from which the networks have been extracted. But we hope that by publishing all the source codes, concordance lists, and outputs with explanations, we give the user a picture of how the networks were created.
description: Our research has been funded by the Academy of Finland (funding decision numbers 298647, 312051, 330727, 336673).
description: {"references": ["Jauhiainen, H., & Alstola, T. (2022). A Social Network of the Prosopography of the Neo-Assyrian Empire. Journal of Open Humanities Data, 8, 8. DOI: http://doi.org/10.5334/johd.74"]}
DOI: 10.5281/zenodo.6413861
title: MSCA-IF-896925_MaMo_WP1-A_Archives-Literature

description: This dataset contains a set of data related to the archives' material and main Albanian published sources consulted during the implementation of the research activities foreseen in WP1. This dataset has been curated by Dr Federica Pompejano. The materials listed can be filtered according to the codes assigned to the five MaMo macro-areas of investigation and to the main issues identified as pivotal for the MaMo research project. The data contained in this dataset are open for public disposal under the terms and conditions described in the CC BY-NC-SA 4.0 license. The consultation of each archival or published source is possible at the archive or library that preserves the listed sources, under each library’s and/or archive's specific terms and conditions. Contacts of each archive and library are provided in the respective .xlsx files. This dataset and all its content are part of a project that has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 896925.
description: NOTE: Due to the early termination of the GA. no. 896925, data are updated to March 31st, 2022. DISCLAIMER: Materials and outputs reflect only the author's view. The REA and the EU Commission are not responsible for any use that may be made of the information they contain.
DOI: 10.5281/zenodo.6413860
title: MSCA-IF-896925_MaMo_WP1-A_Archives-Literature

description: This dataset contains a set of data related to the archives' material and main Albanian published sources consulted during the implementation of the research activities foreseen in WP1. This dataset has been curated by Dr Federica Pompejano. The materials listed can be filtered according to the codes assigned to the five MaMo macro-areas of investigation and to the main issues identified as pivotal for the MaMo research project. The data contained in this dataset are open for public disposal under the terms and conditions described in the CC BY-NC-SA 4.0 license. The consultation of each archival or published source is possible at the archive or library that preserves the listed sources, under each library’s and/or archive's specific terms and conditions. Contacts of each archive and library are provided in the respective .xlsx files. This dataset and all its content are part of a project that has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 896925.
description: NOTE: Due to the early termination of the GA. no. 896925, data are updated to March 31st, 2022. DISCLAIMER: Materials and outputs reflect only the author's view. The REA and the EU Commission are not responsible for any use that may be made of the information they contain.
DOI: 10.5281/zenodo.6412442
title: ZC2 RNAseq

description: ZC2 RNAseq RORG with KO
DOI: 10.5281/zenodo.6412441
title: ZC2 RNAseq

description: ZC2 RNAseq RORG with KO
DOI: 10.5281/zenodo.6220409
title: A Social Network of the Prosopography of the Neo-Assyrian Empire

description: The data used for creating "A Social Network of the Prosopography of the Neo-Assyrian Empire" The networks were created from the text and pdf file versions of the Prosopography of the Neo-Assyrian Empire (PNA). There are two different networks created from the same data. In the two-mode network, persons are connected to the texts in which they are attested. The one-mode network connects two persons if they are attested in the same document. In order to study and visualise the networks, it is sufficient to download the folder Networks.zip. SupplementaryData.zip contain more in-depth explanations of the different stages of creating the networks, the normalization lists used for that, and the output of different stages of the procedure. The dataset has also been described in Jauhiainen, H., & Alstola, T. (2022). A Social Network of the Prosopography of the Neo-Assyrian Empire. <em>Journal of Open Humanities Data</em>, <em>8</em>, 8. DOI: http://doi.org/10.5334/johd.74. For the reasons of copyright, we are not able to publish the data from which the networks have been extracted. But we hope that by publishing all the source codes, concordance lists, and outputs with explanations, we give the user a picture of how the networks were created.
description: Our research has been funded by the Academy of Finland (funding decision numbers 298647, 312051, 330727, 336673).
description: {"references": ["Jauhiainen, H., & Alstola, T. (2022). A Social Network of the Prosopography of the Neo-Assyrian Empire. Journal of Open Humanities Data, 8, 8. DOI: http://doi.org/10.5334/johd.74"]}
DOI: 10.5281/zenodo.5862904
title: A Social Network of the Prosopography of the Neo-Assyrian Empire

description: The data used for creating "A Social Network of the Prosopography of the Neo-Assyrian Empire" The networks were created from the text and pdf file versions of the Prosopography of the Neo-Assyrian Empire (PNA). There are two different networks created from the same data. In the two-mode network, persons are connected to the texts in which they are attested. The one-mode network connects two persons if they are attested in the same document. In order to study and visualise the networks, it is sufficient to download the folder Networks.zip. SupplementaryData.zip contain more in-depth explanations of the different stages of creating the networks, the normalization lists used for that, and the output of different stages of the procedure. The dataset has also been described in Jauhiainen, H., & Alstola, T. (2022). A Social Network of the Prosopography of the Neo-Assyrian Empire. <em>Journal of Open Humanities Data</em>, <em>8</em>, 8. DOI: http://doi.org/10.5334/johd.74. For the reasons of copyright, we are not able to publish the data from which the networks have been extracted. But we hope that by publishing all the source codes, concordance lists, and outputs with explanations, we give the user a picture of how the networks were created.
description: Our research has been funded by the Academy of Finland (funding decision numbers 298647, 312051, 330727, 336673).
description: {"references": ["Jauhiainen, H., & Alstola, T. (2022). A Social Network of the Prosopography of the Neo-Assyrian Empire. Journal of Open Humanities Data, 8, 8. DOI: http://doi.org/10.5334/johd.74"]}
DOI: 10.6084/m9.figshare.19518216.v1
title: Additional file 1 of Regional opening strategies with commuter testing and containment of new SARS-CoV-2 variants in Germany

description: Additional file 1. The baseline intra-county contact patterns and the raw, non-normalized mobility data, not yet differentiated for age-groups, used for initialization of inter-county mobility.
DOI: 10.6084/m9.figshare.19518216
title: Additional file 1 of Regional opening strategies with commuter testing and containment of new SARS-CoV-2 variants in Germany

description: Additional file 1. The baseline intra-county contact patterns and the raw, non-normalized mobility data, not yet differentiated for age-groups, used for initialization of inter-county mobility.