cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13543118.v1
title: deepFlashRight16new.h5

description: Hippocampal weights
DOI: 10.6084/m9.figshare.13543118
title: deepFlashRight16new.h5

description: Hippocampal weights
DOI: 10.5519/qd.bgcuet3s
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (24361 records)
DOI: 10.6084/m9.figshare.13502887
title: Supporting Data from Bilateral amygdala damage linked to impaired ability to predict others' fear but preserved moral judgements about causing others fear

description: All data included in the analyses presented in Bilateral amygdala damage linked to impaired ability to predict others’ fear but preserved moral judgments about causing others’ fear
DOI: 10.6084/m9.figshare.13502887.v2
title: Supporting Data from Bilateral amygdala damage linked to impaired ability to predict others' fear but preserved moral judgements about causing others fear

description: All data included in the analyses presented in Bilateral amygdala damage linked to impaired ability to predict others’ fear but preserved moral judgments about causing others’ fear
DOI: 10.6084/m9.figshare.13502887.v1
title: Manuscript Supporting Data from Bilateral amygdala damage linked to impaired ability to predict others' fear but preserved moral judgements about causing others fear

description: All data included in the analyses presented in Bilateral amygdala damage linked to impaired ability to predict others’ fear but preserved moral judgments about causing others’ fear
DOI: 10.5519/qd.gsvh5uws
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (32 records)
DOI: 10.21227/v7e2-w206
title: synthetic dataset for community detection

description: Synthetic data 1: A network contains nine communities. The nodes insides the community are closely connected, and the nodes between communities are sparsely connected.Synthetic data 2: A network contains nine communities. There are some nodes that connect the nodes in different communities at the same time.
DOI: 10.21227/zrct-y974
title: synthetic dataset for community detection

description: Synthetic data 1: A network contains nine communities. The nodes insides the community are closely connected, and the nodes between communities are sparsely connected.Synthetic data 2: A network contains nine communities. There are some nodes that connect the nodes in different communities at the same time.
DOI: 10.5519/qd.3ud4anvi
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (275 records)
DOI: 10.5519/qd.oui71cqy
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.13543394
title: First Phase - Data - Medical School

description: Raw data phase 1
DOI: 10.6084/m9.figshare.13543394.v2
title: First Phase - Data - Medical School

description: Raw data phase 1
DOI: 10.6084/m9.figshare.13543481
title: Second Phase - Survey Data - Medical School

description: Raws data - Second Phase - Survey - Medical School
DOI: 10.6084/m9.figshare.13543481.v1
title: Second Phase - Survey Data - Medical School

description: Raws data - Second Phase - Survey - Medical School
DOI: 10.6084/m9.figshare.13543394.v1
title: First_Phase_Marize.sav

description: Raw data phase 1
DOI: 10.26182/j36r-r007
title: Supplementary material for "Associations of serum testosterone and sex hormone-binding globulin with incident cardiovascular events in men"
DOI: 10.5281/zenodo.4426281
title: Machine learning reactive mixing dataset-10

description: Reactive-mixing dataset-3.1 for machine learning analyses
description: For DIB article
DOI: 10.5281/zenodo.4426280
title: Machine learning reactive mixing dataset-10

description: Reactive-mixing dataset-3.1 for machine learning analyses
description: For DIB article
DOI: 10.6084/m9.figshare.13543748.v1
title: Additional file 1 of Genome-wide survey of tandem repeats by nanopore sequencing shows that disease-associated repeats are more polymorphic in the general population

description: Additional file 1. Table S1. Data sets used in this study.Detection rates are the number of tandem repeats whose length is predicted from at least one DNA read. *3,312,291 loci. Table S2. Comparison of tantan and TRF annotated tandem repeatsNumber of intersections are counted using bedtools ( https://bedtools.readthedocs.io/en/latest/ ). Each repeat unit was counted separately. Table S3. Phased repeat length and near-by SNPs.SNP genotype on the short and long alleles were shown in each dataset. Repeat copy number changes on both alleles were genotyped using tandem-genotypes. (A) ATXN3 repeat and (B, C) GLS repeat. SNP rs numbers are from dbSNP ( https://www.ncbi.nlm.nih.gov/snp/ ). Table S4. Polymorphic tandem repeat and near-by GWAS signals.Highly polymorphic exonic triplet repeats (IQR ≥ 5) with near GWAS signals (
DOI: 10.6084/m9.figshare.13543748
title: Additional file 1 of Genome-wide survey of tandem repeats by nanopore sequencing shows that disease-associated repeats are more polymorphic in the general population

description: Additional file 1. Table S1. Data sets used in this study.Detection rates are the number of tandem repeats whose length is predicted from at least one DNA read. *3,312,291 loci. Table S2. Comparison of tantan and TRF annotated tandem repeatsNumber of intersections are counted using bedtools ( https://bedtools.readthedocs.io/en/latest/ ). Each repeat unit was counted separately. Table S3. Phased repeat length and near-by SNPs.SNP genotype on the short and long alleles were shown in each dataset. Repeat copy number changes on both alleles were genotyped using tandem-genotypes. (A) ATXN3 repeat and (B, C) GLS repeat. SNP rs numbers are from dbSNP ( https://www.ncbi.nlm.nih.gov/snp/ ). Table S4. Polymorphic tandem repeat and near-by GWAS signals.Highly polymorphic exonic triplet repeats (IQR ≥ 5) with near GWAS signals (
DOI: 10.6084/m9.figshare.13543814
title: Additional file 2 of Association between cardiometabolic health and objectively-measured, free-living sleep parameters: a pilot study in a rural African setting

description: Additional file 2. Models. Full logistic regression models for Fig. 1a-f, Fig. 2a-f and Additional file 1: Fig. S1A-B.
DOI: 10.6084/m9.figshare.13543814.v1
title: Additional file 2 of Association between cardiometabolic health and objectively-measured, free-living sleep parameters: a pilot study in a rural African setting

description: Additional file 2. Models. Full logistic regression models for Fig. 1a-f, Fig. 2a-f and Additional file 1: Fig. S1A-B.
DOI: 10.6084/m9.figshare.13543478
title: Toculizimab and Steroid combination therapy in management of COVID 19 induced cytokine release syndrome

description: <b>Background</b>: Steroids are used to treat cytokine release syndrome(CRS) and inflammatory lung damage in severe COVID-19.Immunomodulatory drugs such as Toculizimab(TCZ) could be of incremental benefit.The aim of this retrospective cohort study was to evaluate the efficacy and safety of combination therapy of TCZ and steroid in management of COVID-19 associated CRS. <b>Methods:</b> This retrospective cohort study was conducted at Noble hospital and Research Centre (NHRC),Pune,India between 2<sup>nd</sup> April and 2<sup>nd</sup> November 2020.Patients having rapidly worsening respiratory status, defined as presence of hypoxia(room air oxygen saturation&lt; 90%) and tachypnea(respiratory rate &gt;30 per minute) at rest or after minimal exertion despite use of antivirals and intravenous steroids(Methylprednisolone or Dexamethasone) were prescribed TCZ. It was given intravenously at a dose of 8 mg/kg bodyweight.The primary outcome was incidence of all-cause mortality during hospital admission.Secondary outcomes included need for mechanical ventilation and incidence of infectious complications.Baseline and time dependent risk factors significantly associated with death were identified by Relative risk estimation. <b>Results:</b> Of 2831 admitted patients,515 (24.3% females) were administered TCZ and steroids. There were 135 deaths(26.2%),while 380 patients(73.8%) had clinical recovery.Mechanical ventilation was required in 242(47%) patients,of which 44.2%(107/242) recovered and were weaned off the ventilator. 37% patients could be managed in wards without need for intensive care while 53% patients needed only supplemental oxygen prior to recovery.Infectious complications like hospital acquired pneumonia,blood stream bacterial and fungal infections were seen in 2.13%, 2.13% and 0.06% patients respectively.Age ≥60 yrs(p=0.014), IL-6 ≥100 pg/ml(p = 0.002), D-dimer ≥1000 ng/ml(p&lt; 0.0001),CT severity index ≥18(p&lt; 0.0001) and systemic complications like lung fibrosis(p=0.019),cardiac arrhythmia(p&lt; 0.0001),hypotension(p &lt;0.0001) and encephalopathy(p &lt;0.0001) were associated with increased risk of death on Relative risk estimation. <b>Conclusions: </b>This study illustrates the robust efficacy of TCZ and steroids as an anti-inflammatory combination therapy in tackling CRS and needs timely administration to interrupt the cascade leading to irreversible lung damage and death.
DOI: 10.6084/m9.figshare.13543828.v1
title: Additional file 2 of NRG1 fusions in breast cancer

description: Additional file 2: Supplementary Table 1. Match of fusion cDNA AF009227, originally reported by Schaefer et al. [11], to Reference genome. Supplementary Table 2. Exons of PPP6R3, TENM4, NRG1. Supplementary Table 3. Fusions of NRG1 in 571 breast cancers. Supplementary Table 4. All NRG1 rearrangements in first 250 breast cancers.
DOI: 10.6084/m9.figshare.13543478.v1
title: Toculizimab and Steroid combination therapy in management of COVID 19 induced cytokine release syndrome

description: <b>Background</b>: Steroids are used to treat cytokine release syndrome(CRS) and inflammatory lung damage in severe COVID-19.Immunomodulatory drugs such as Toculizimab(TCZ) could be of incremental benefit.The aim of this retrospective cohort study was to evaluate the efficacy and safety of combination therapy of TCZ and steroid in management of COVID-19 associated CRS. <b>Methods:</b> This retrospective cohort study was conducted at Noble hospital and Research Centre (NHRC),Pune,India between 2<sup>nd</sup> April and 2<sup>nd</sup> November 2020.Patients having rapidly worsening respiratory status, defined as presence of hypoxia(room air oxygen saturation&lt; 90%) and tachypnea(respiratory rate &gt;30 per minute) at rest or after minimal exertion despite use of antivirals and intravenous steroids(Methylprednisolone or Dexamethasone) were prescribed TCZ. It was given intravenously at a dose of 8 mg/kg bodyweight.The primary outcome was incidence of all-cause mortality during hospital admission.Secondary outcomes included need for mechanical ventilation and incidence of infectious complications.Baseline and time dependent risk factors significantly associated with death were identified by Relative risk estimation. <b>Results:</b> Of 2831 admitted patients,515 (24.3% females) were administered TCZ and steroids. There were 135 deaths(26.2%),while 380 patients(73.8%) had clinical recovery.Mechanical ventilation was required in 242(47%) patients,of which 44.2%(107/242) recovered and were weaned off the ventilator. 37% patients could be managed in wards without need for intensive care while 53% patients needed only supplemental oxygen prior to recovery.Infectious complications like hospital acquired pneumonia,blood stream bacterial and fungal infections were seen in 2.13%, 2.13% and 0.06% patients respectively.Age ≥60 yrs(p=0.014), IL-6 ≥100 pg/ml(p = 0.002), D-dimer ≥1000 ng/ml(p&lt; 0.0001),CT severity index ≥18(p&lt; 0.0001) and systemic complications like lung fibrosis(p=0.019),cardiac arrhythmia(p&lt; 0.0001),hypotension(p &lt;0.0001) and encephalopathy(p &lt;0.0001) were associated with increased risk of death on Relative risk estimation. <b>Conclusions: </b>This study illustrates the robust efficacy of TCZ and steroids as an anti-inflammatory combination therapy in tackling CRS and needs timely administration to interrupt the cascade leading to irreversible lung damage and death.
DOI: 10.6084/m9.figshare.13543828
title: Additional file 2 of NRG1 fusions in breast cancer

description: Additional file 2: Supplementary Table 1. Match of fusion cDNA AF009227, originally reported by Schaefer et al. [11], to Reference genome. Supplementary Table 2. Exons of PPP6R3, TENM4, NRG1. Supplementary Table 3. Fusions of NRG1 in 571 breast cancers. Supplementary Table 4. All NRG1 rearrangements in first 250 breast cancers.
DOI: 10.6084/m9.figshare.13543894.v1
title: Additional file 1 of Immigration, perceived discrimination and mental health: evidence from Venezuelan population living in Peru

description: Additional file 1: A1 Table. Characteristics of the non-included sample. A2 Table. Unadjusted models for control variables.
DOI: 10.6084/m9.figshare.13543894
title: Additional file 1 of Immigration, perceived discrimination and mental health: evidence from Venezuelan population living in Peru

description: Additional file 1: A1 Table. Characteristics of the non-included sample. A2 Table. Unadjusted models for control variables.
DOI: 10.6084/m9.figshare.13543945
title: Additional file 2 of Extracellular vesicle mimics made from iPS cell-derived mesenchymal stem cells improve the treatment of metastatic prostate cancer

description: Additional file 2.
DOI: 10.6084/m9.figshare.13543945.v1
title: Additional file 2 of Extracellular vesicle mimics made from iPS cell-derived mesenchymal stem cells improve the treatment of metastatic prostate cancer

description: Additional file 2.
DOI: 10.6084/m9.figshare.13544026.v1
title: Additional file 11 of Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour

description: Additional file 11: Table S11. Shared by 2x Species Functional Groups with Genes (XLS 16 kb)
DOI: 10.6084/m9.figshare.13544023
title: Additional file 10 of Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour

description: Additional file 10: Table S10. Shared by 3x Species Functional Groups with Genes (XLS 24 kb)
DOI: 10.6084/m9.figshare.13544047.v1
title: Additional file 5 of Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour

description: Additional file 5: Table S5. Trinity assembly statistics
DOI: 10.6084/m9.figshare.13544035
title: Additional file 1 of Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour

description: Additional file 1: Table S1. Individual Running number by behavioural and QPCR analyses
DOI: 10.6084/m9.figshare.13544035.v1
title: Additional file 1 of Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour

description: Additional file 1: Table S1. Individual Running number by behavioural and QPCR analyses
DOI: 10.6084/m9.figshare.13544038
title: Additional file 2 of Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour

description: Additional file 2: Table S2. BLASTn results and primers for ALL QPCR (XLS 1079 kb)
DOI: 10.6084/m9.figshare.13544053.v1
title: Additional file 7 of Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour

description: Additional file 7; Table S7. Global brain transcriptome comparisons Pfam (XLS 531 kb)
DOI: 10.6084/m9.figshare.13544041.v1
title: Additional file 3 of Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour

description: Additional file 3: Table S3. RNA samples pooling and bioanalyser report.xlsx
DOI: 10.6084/m9.figshare.13544056.v1
title: Additional file 8 of Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour

description: Additional file 8: Table S8. DEG Spearman Correlation matrix (XLS 20 kb)
DOI: 10.6084/m9.figshare.13544059
title: Additional file 9 of Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour

description: Additional file 9: Table S9. DEG list logFC & FDR
DOI: 10.6084/m9.figshare.13544023.v1
title: Additional file 10 of Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour

description: Additional file 10: Table S10. Shared by 3x Species Functional Groups with Genes (XLS 24 kb)
DOI: 10.6084/m9.figshare.13544038.v1
title: Additional file 2 of Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour

description: Additional file 2: Table S2. BLASTn results and primers for ALL QPCR (XLS 1079 kb)
DOI: 10.6084/m9.figshare.13544044.v1
title: Additional file 4 of Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour

description: Additional file 4: Table S4. Completeness assessment of transcriptome assembly by BUSCO and Transrate (XLS 23 kb)
DOI: 10.6084/m9.figshare.13544041
title: Additional file 3 of Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour

description: Additional file 3: Table S3. RNA samples pooling and bioanalyser report.xlsx
DOI: 10.6084/m9.figshare.13544047
title: Additional file 5 of Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour

description: Additional file 5: Table S5. Trinity assembly statistics
DOI: 10.6084/m9.figshare.13544050
title: Additional file 6 of Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour

description: Additional file 6: Table S6. Global brain transcriptome comparisons genelist (XLS 1736 kb)
DOI: 10.6084/m9.figshare.13544059.v1
title: Additional file 9 of Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour

description: Additional file 9: Table S9. DEG list logFC & FDR
DOI: 10.6084/m9.figshare.13544050.v1
title: Additional file 6 of Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour

description: Additional file 6: Table S6. Global brain transcriptome comparisons genelist (XLS 1736 kb)
DOI: 10.6084/m9.figshare.13544053
title: Additional file 7 of Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour

description: Additional file 7; Table S7. Global brain transcriptome comparisons Pfam (XLS 531 kb)
DOI: 10.6084/m9.figshare.13544056
title: Additional file 8 of Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour

description: Additional file 8: Table S8. DEG Spearman Correlation matrix (XLS 20 kb)
DOI: 10.6084/m9.figshare.13544026
title: Additional file 11 of Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour

description: Additional file 11: Table S11. Shared by 2x Species Functional Groups with Genes (XLS 16 kb)
DOI: 10.6084/m9.figshare.13544044
title: Additional file 4 of Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour

description: Additional file 4: Table S4. Completeness assessment of transcriptome assembly by BUSCO and Transrate (XLS 23 kb)
DOI: 10.6084/m9.figshare.13544138
title: Additional file 5 of The effect of behaviour change interventions on changes in physical activity and anthropometrics in ambulatory hospital settings: a systematic review and meta-analysis

description: Additional file 5.
DOI: 10.6084/m9.figshare.13544138.v1
title: Additional file 5 of The effect of behaviour change interventions on changes in physical activity and anthropometrics in ambulatory hospital settings: a systematic review and meta-analysis

description: Additional file 5.
DOI: 10.25345/c5bv3c
title: MassIVE MSV000086674 - ATRX interactome test submission
title: ATRX is a chromatin remodelling protein of the SWI/SNF family, mutations in which cause alpha thalassemia X-linked (ATRX) intellectual disability syndrome and are highly associated with a number of cancers characterized by alternative lengthening of telomeres. ATRX functions with the histone chaperone DAXX to facilitate deposition of the histone variant H3.3 at heterochromatic regions such as telomere and pericentric repeats, resulting in a unique form of heterochromatin characterized by both trimethylation of histone H3 at lysine 9 (H3K9me3) and H3.3. How ATRX is recruited to these regions remain unclear.To better understand it, we therefore used immunoprecipitation-coupled to mass spectrometry (IP-MS) to identify potential factors that interact with ATRX and may promote its localization and function. Based on our proteomics results, we identified known ATRX-interacting proteins, DAXX and MRE11. We also identified a number of proteins that have been genetically linked to G-quadruplex structures. Interestingly, we identified members of DNA replcation machinery MCM complex (e.g. MCM2, MCM4, MCM6, and MCM7) and the faciliates chromatin transcription (FACT) comeplex as novel ATRX-interacting proteins. We then verified the interaction of ATRX to MCM proteins and FACT subunits by co-immunoprecipition/immunoblot and proximity ligation assay.
DOI: 10.6084/m9.figshare.13544177.v1
title: Additional file 1 of Misinformation about COVID-19: evidence for differential latent profiles and a strong association with trust in science

description: Additional file 1.
DOI: 10.6084/m9.figshare.13544177
title: Additional file 1 of Misinformation about COVID-19: evidence for differential latent profiles and a strong association with trust in science

description: Additional file 1.
DOI: 10.6084/m9.figshare.13544228.v1
title: Additional file 1 of Implementation and validation of an in-house combined fluorescein/media-fill test to qualify radiopharmacy operators

description: Additional file 1. S1: TSB-F preparation protocol; S2: Operator evaluation form; S3: Detailed MFT-F protocol; S4: MFT-F cost table.
DOI: 10.6084/m9.figshare.13544228
title: Additional file 1 of Implementation and validation of an in-house combined fluorescein/media-fill test to qualify radiopharmacy operators

description: Additional file 1. S1: TSB-F preparation protocol; S2: Operator evaluation form; S3: Detailed MFT-F protocol; S4: MFT-F cost table.
DOI: 10.6084/m9.figshare.13544288.v1
title: Additional file 1 of Clinical effects of probiotic or azithromycin as an adjunct to scaling and root planning in the treatment of stage III periodontitis: a pilot randomized controlled clinical trial

description: Additional file 1: Patients with PPD ≥5, ≥6 and ≥7mm, in risk of progression and in need for additional therapy at baseline, 3- and 12-months follow up.
DOI: 10.6084/m9.figshare.13544288
title: Additional file 1 of Clinical effects of probiotic or azithromycin as an adjunct to scaling and root planning in the treatment of stage III periodontitis: a pilot randomized controlled clinical trial

description: Additional file 1: Patients with PPD ≥5, ≥6 and ≥7mm, in risk of progression and in need for additional therapy at baseline, 3- and 12-months follow up.
DOI: 10.6084/m9.figshare.13544479
title: Additional file 3 of Children’s outdoor active mobility behaviour and neighbourhood safety: a systematic review in measurement methods and future research directions

description: Additional file 3. Excel sheet with the total number of studies that were excluded and the reason for exclusion.
DOI: 10.6084/m9.figshare.13544479.v1
title: Additional file 3 of Children’s outdoor active mobility behaviour and neighbourhood safety: a systematic review in measurement methods and future research directions

description: Additional file 3. Excel sheet with the total number of studies that were excluded and the reason for exclusion.