cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.2nve42
title: Occurrence Download

description: A dataset containing 11588 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "MediaType is Image",
 "ScientificName is Lonicera xylosteum L."
 ]
}

 The dataset includes 11588 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0303130-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pcmcr3
title: Occurrence Download

description: A dataset containing 295 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Histiodraco velifer (Regan, 1914)"
 ]
}

 The dataset includes 295 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120927-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bh48uq
title: Occurrence Download

description: A dataset containing 183669 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Polioptila melanura Lawrence, 1857)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 183669 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002855-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26005471
title: SNP calls from 275 cannabis accession using GBS.

description: Methods: Barcoded and multiplexed genomic DNA libraries were prepared from purified DNA samples based on the GBS methodology published by Gilchrist et al. (2022) and Poland et al. (2012). Paired-end (2 9 150bp) Illumina NextSeq sequencing and variant calling were performed according to Gilchrist et al. (2022), using Trimmomatic (Bolger et al., 2014) for read trimming and the GBS-SNP-CROP 2.0 pipeline (Melo et al., 2016) for parsing, demultiplexing, alignment, and variant calling on the ASM23057v2 Purple Kush genome assembly (Laverty et al., 2019).List of accession names and flowering phenotype are provided in Supplemental Table S1Bolger, A.M., Lohse, M. & Usadel, B. (2014) Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics, 30, 2114–2120. Available from: https://doi.org/10.1093/bioinformatics/btu170Gilchrist, E.J., Hegebarth, D., Wang, S., Quilichini, T.D., Sawler, J., Toh, S.Y. et al. (2022) A rapid method for sex identification in Cannabis sativa using high resolution melt analysis. Botany, 99,1–7. Available from: https://doi.org/10.1139/cjb-2021-0168Laverty, K.U., Stout, J.M., Sullivan, M.J., Shah, H., Gill, N., Holbrook, L. et al. (2019) A physical and genetic map of Cannabis sativa identifies extensive rearrangements at the THC/CBD acid synthase loci. Genome Research, 29, 146–156. Available from: https://doi.org/10.1101/gr.242594.118Melo, A.T., Bartaula, R. & Hale, I. (2016) GBS-SNP-CROP: a referenceoptional pipeline for SNP discovery and plant germplasm characterization using variable length, paired-end genotyping-by-sequencing data. BMC Bioinformatics, 17,1–15. Available from: https://doi.org/10. 1186/s12859-016-0879-yPoland, J.A., Brown, P.J., Sorrells, M.E. & Jannink, J.L. (2012) Development of high-density genetic maps for barley and wheat using a novel twoenzyme genotyping-by-sequencing approach. PLoS One, 7, e32253. Available from: https://doi.org/10.1371/journal.pone.0032253<br>
DOI: 10.6084/m9.figshare.26005471.v1
title: SNP calls from 275 cannabis accession using GBS.

description: Methods: Barcoded and multiplexed genomic DNA libraries were prepared from purified DNA samples based on the GBS methodology published by Gilchrist et al. (2022) and Poland et al. (2012). Paired-end (2 9 150bp) Illumina NextSeq sequencing and variant calling were performed according to Gilchrist et al. (2022), using Trimmomatic (Bolger et al., 2014) for read trimming and the GBS-SNP-CROP 2.0 pipeline (Melo et al., 2016) for parsing, demultiplexing, alignment, and variant calling on the ASM23057v2 Purple Kush genome assembly (Laverty et al., 2019).List of accession names and flowering phenotype are provided in Supplemental Table S1Bolger, A.M., Lohse, M. & Usadel, B. (2014) Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics, 30, 2114–2120. Available from: https://doi.org/10.1093/bioinformatics/btu170Gilchrist, E.J., Hegebarth, D., Wang, S., Quilichini, T.D., Sawler, J., Toh, S.Y. et al. (2022) A rapid method for sex identification in Cannabis sativa using high resolution melt analysis. Botany, 99,1–7. Available from: https://doi.org/10.1139/cjb-2021-0168Laverty, K.U., Stout, J.M., Sullivan, M.J., Shah, H., Gill, N., Holbrook, L. et al. (2019) A physical and genetic map of Cannabis sativa identifies extensive rearrangements at the THC/CBD acid synthase loci. Genome Research, 29, 146–156. Available from: https://doi.org/10.1101/gr.242594.118Melo, A.T., Bartaula, R. & Hale, I. (2016) GBS-SNP-CROP: a referenceoptional pipeline for SNP discovery and plant germplasm characterization using variable length, paired-end genotyping-by-sequencing data. BMC Bioinformatics, 17,1–15. Available from: https://doi.org/10. 1186/s12859-016-0879-yPoland, J.A., Brown, P.J., Sorrells, M.E. & Jannink, J.L. (2012) Development of high-density genetic maps for barley and wheat using a novel twoenzyme genotyping-by-sequencing approach. PLoS One, 7, e32253. Available from: https://doi.org/10.1371/journal.pone.0032253<br>
DOI: 10.6084/m9.figshare.26008198
title: Auto x Photo F2 Mapping Population SNPs

description: Methods:An F2 population was developed between an auto-flowering and photoperiod sensitive cross to construct a genetic map. A total of 192 F2 plants were grown indoors and genotyped using a SeqSNP chip with 5,000 custom markers selected from our GBS dataset covering the cannabis genome. Biosearch Technologies performed the mapping of reads and SNP calling using the Purple Kush genome (ASM23057v4, GCA_000230575.4) as reference. In brief, variant calling was done using GATK (McKenna et al., 2010) and identified SNPs were filtered by biallelic variants. Only those SNPs for which a definitive parental origin could be assigned were used for genetic map construction. Of the 4004 markers available, only 484 remained after filtering for missing genotypes and segregation distortion. A linkage map was constructed with the R package Rqtl using the ‘est.map’ function with a genotyping error rate set to 0.01. Genetic distances were calculated from the observed recombination fractions using the Kosambi function.
DOI: 10.6084/m9.figshare.26008198.v1
title: Auto x Photo F2 Mapping Population SNPs

description: Methods:An F2 population was developed between an auto-flowering and photoperiod sensitive cross to construct a genetic map. A total of 192 F2 plants were grown indoors and genotyped using a SeqSNP chip with 5,000 custom markers selected from our GBS dataset covering the cannabis genome. Biosearch Technologies performed the mapping of reads and SNP calling using the Purple Kush genome (ASM23057v4, GCA_000230575.4) as reference. In brief, variant calling was done using GATK (McKenna et al., 2010) and identified SNPs were filtered by biallelic variants. Only those SNPs for which a definitive parental origin could be assigned were used for genetic map construction. Of the 4004 markers available, only 484 remained after filtering for missing genotypes and segregation distortion. A linkage map was constructed with the R package Rqtl using the ‘est.map’ function with a genotyping error rate set to 0.01. Genetic distances were calculated from the observed recombination fractions using the Kosambi function.
DOI: 10.15468/dl.6tfpxr
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Oxalis debilis Kunth"
 ]
}

 The dataset includes 107 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0298187-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26007268
title: Cannabis SNPs called from whole genome sequencing data.

description: SNPs called from WGS data of 27 cannabis accession, 12 auto-flowering and 17 photoperiod sensitive. Data is for chromosome 5 only, Purple Kush assembly (ASM23057v4). Annotated as chromosome 1 in other assemblies.Methods:Comparative population genetics statistics for chromosome 5 (Purple Kush assembly ASM23057v4) were performed using WGS data from 17 photoperiod-sensitive and 12 auto-flowering genotypes. Genome Analysis Toolkit (GATK) was used for variant calling (McKenna et al., 2010). VCFtools v.0.1.16 (Danecek et al., 2011) was used to filter biallelic SNPs and remove SNPs with minor allele frequencies &lt;1% and missing data &gt;20%. After filtering, 916 000 SNPs on chromosome 5 were used for downstream analyses.McKenna, A., Hanna, M., Banks, E., Sivachenko, A., Cibulskis, K., Kernytsky, A. et al. (2010) The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Research, 20, 1297–1303. Available from: https://doi.org/10.1101/gr.107524.110Danecek, P., Auton, A., Abecasis, G., Albers, C.A., Banks, E., DePristo, M.A. et al. (2011) The variant call format and VCFtools. Bioinformatics, 27, 2156–2158. Available from: https://doi.org/10.1093/bioinformatics/btr330<br>
DOI: 10.6084/m9.figshare.26007268.v1
title: Cannabis SNPs called from whole genome sequencing data.

description: SNPs called from WGS data of 27 cannabis accession, 12 auto-flowering and 17 photoperiod sensitive. Data is for chromosome 5 only, Purple Kush assembly (ASM23057v4). Annotated as chromosome 1 in other assemblies.Methods:Comparative population genetics statistics for chromosome 5 (Purple Kush assembly ASM23057v4) were performed using WGS data from 17 photoperiod-sensitive and 12 auto-flowering genotypes. Genome Analysis Toolkit (GATK) was used for variant calling (McKenna et al., 2010). VCFtools v.0.1.16 (Danecek et al., 2011) was used to filter biallelic SNPs and remove SNPs with minor allele frequencies &lt;1% and missing data &gt;20%. After filtering, 916 000 SNPs on chromosome 5 were used for downstream analyses.McKenna, A., Hanna, M., Banks, E., Sivachenko, A., Cibulskis, K., Kernytsky, A. et al. (2010) The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Research, 20, 1297–1303. Available from: https://doi.org/10.1101/gr.107524.110Danecek, P., Auton, A., Abecasis, G., Albers, C.A., Banks, E., DePristo, M.A. et al. (2011) The variant call format and VCFtools. Bioinformatics, 27, 2156–2158. Available from: https://doi.org/10.1093/bioinformatics/btr330<br>
DOI: 10.15468/dl.wvsq9m
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Diomedea sanfordi",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 107 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069957-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dqbj2r
title: Occurrence Download

description: A dataset containing 1892 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Amanita persicina (D.T.Jenkins) Tulloss & Geml"
 ]
}

 The dataset includes 1892 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0303110-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zmcxz6
title: Occurrence Download

description: A dataset containing 7130 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cranioleuca curtata (P.L.Sclater, 1870))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7130 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002862-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z3aptr
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Peperomia nitida Dahlst."
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0298190-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rgcfhm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aeschynanthus phaeotrichus Schltr."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002863-230224095556074/datasets/export for details.
DOI: 10.15468/dl.zbh2zy
title: Occurrence Download

description: A dataset containing 14961 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Diomedea epomophora",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 14961 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069960-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.85cuzr
title: Occurrence Download

description: A dataset containing 1826 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cryptochloa Swallen"
 ]
}

 The dataset includes 1826 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0303108-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pjq8xk
title: Occurrence Download

description: A dataset containing 376 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Asthenes heterura (Berlepsch, 1901))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 376 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0298186-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mj2cea
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aeschynanthus perrottetii A.DC."
 ]
}

 The dataset includes 76 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002869-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.23t2cr
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Artemisia oxycephala Kitag."
 ]
}

 The dataset includes 125 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004681-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dwz77y
title: Occurrence Download

description: A dataset containing 58432 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Diomedea exulans",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 58432 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069959-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7exer4
title: Occurrence Download

description: A dataset containing 1205 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Synallaxis castanea P.L.Sclater, 1856)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1205 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002854-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8g2cce
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Pteroglossa luteola Garay"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0298192-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j3e2n2
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Perideridia leptocarpa T.I.Chuang & Constance"
 ]
}

 The dataset includes 99 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069978-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8yqk5q
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fundulidae",
 "Country is Canada",
 "StateProvince is Quebec",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 3 records were derived from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0303016-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kc7scf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Synallaxis simoni Hellmayr, 1907)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002858-230224095556074/datasets/export for details.
DOI: 10.15468/dl.gm32uk
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CAN.2_1",
 "TaxonKey is Echinochloa muricata (P.Beauv.) Fernald"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067692-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q9rfw6
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Triphora hassleriana (Cogn. ex Chodat & Hassl.) Schltr."
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0298195-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mc883c
title: Occurrence Download

description: A dataset containing 418775 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 "DatasetKey is one of (Taiwan New Year Bird Count, National vegetation diversity inventory and mapping plan, The Taiwan Breeding Bird Survey Data, EOD – eBird Observation Dataset, Taiwan Wild Bird Federation Bird Records Database, iNaturalist Research-grade Observations, 臺灣兩棲類資源調查網 (Taiwan Amphibians Database), Taiwan Moth Occurrence Data Collected From Social Network, Investigation Current Status of River in Taiwan between 2002 to 2020, 臺灣兩棲類資源調查與教育宣導推廣計畫 Resources survey and education advocacy to promote for Taiwan amphibian resources)",
 "Geometry POLYGON((120.53983 24.20113,121.10248 24.20113,121.10248 24.41494,120.53983 24.41494,120.53983 24.20113))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 418775 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069969-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j8n7kh
title: Occurrence Download

description: A dataset containing 7282 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "MediaType is Image",
 "ScientificName is Lilium martagon L."
 ]
}

 The dataset includes 7282 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0303122-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qmymbh
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aeschynanthus perakensis Ridl."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002859-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.