cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/xsjtu5
title: The remarkable biology of a new species of Gelis Thunberg, 1827 (Ichneumonidae, Phygadeuontinae), a solitary endoparasitoid of fresh eggs of Timarcha (Coleoptera, Chrysomelidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Shaw, Mark R., Kan, Pieter, Stirum, Brigitte Kan-van Limburg, Schwarz, Martin (2021): The remarkable biology of a new species of Gelis Thunberg, 1827 (Ichneumonidae, Phygadeuontinae), a solitary endoparasitoid of fresh eggs of Timarcha (Coleoptera, Chrysomelidae). Journal of Hymenoptera Research 82: 161-186, DOI: http://dx.doi.org/10.3897/jhr.82.64657, URL: http://dx.doi.org/10.3897/jhr.82.64657
DOI: 10.15468/s6dyrj
title: The genus Ismarus Haliday (Hymenoptera, Ismaridae) from China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zhang, Xiao, Chen, Hua-yan, Liu, Jing-xian, Luo, Shi-xiao (2021): The genus Ismarus Haliday (Hymenoptera, Ismaridae) from China. Journal of Hymenoptera Research 82: 139-160, DOI: http://dx.doi.org/10.3897/jhr.82.62148, URL: http://dx.doi.org/10.3897/jhr.82.62148
DOI: 10.5281/zenodo.4730190
title: Notch1 switches progenitor competence in inducing medulloblastoma

description: Raw data from RNA-sequencing profiles of medulloblastoma samples induced by N1ICD+MYC/Gfi1 (in Math1+ cells) and MYC/Gfi1 (in S100b+ cells) compared with previously published Group 3 MB mouse models (MYC/Gfi1, MYC/Otx2).
DOI: 10.5281/zenodo.4730189
title: Notch1 switches progenitor competence in inducing medulloblastoma

description: Raw data from RNA-sequencing profiles of medulloblastoma samples induced by N1ICD+MYC/Gfi1 (in Math1+ cells) and MYC/Gfi1 (in S100b+ cells) compared with previously published Group 3 MB mouse models (MYC/Gfi1, MYC/Otx2).
DOI: 10.5517/ccdc.csd.cc23yzln
title: CCDC 1965232: Experimental Crystal Structure Determination

description: Related Article: Li-Long Dang, Xiang Gao, Yue-Jian Lin, Guo-Xin Jin|2020|Chemical Science|11|1226|doi:10.1039/C9SC05796J
DOI: 10.5517/ccdc.csd.cc24cmsy
title: CCDC 1977390: Experimental Crystal Structure Determination

description: Related Article: Dominique Verreault, Kevin Moreno, Éric Merlet, Frédéric Adamietz, Brice Kauffmann, Yann Ferrand, Céline Olivier, Vincent Rodriguez|2020|J.Am.Chem.Soc.|142|257|doi:10.1021/jacs.9b09890
DOI: 10.5517/ccdc.csd.cc23gl6d
title: CCDC 1950433: Experimental Crystal Structure Determination

description: Related Article: Ani Baghdasaryan, Céline Besnard, Latevi Max Lawson Daku, Teresa Delgado, Thomas Burgi|2020|Inorg.Chem.|59|2200|doi:10.1021/acs.inorgchem.9b02828
DOI: 10.5281/zenodo.4730123
title: Raw data used in AC. Raclariu-Manolica et al. "DNA metabarcoding for quality control of basil, oregano and paprika."

description: Raw data used in: AC. Raclariu-Manolica, JA Anmarkrud, M Kierczak, N Rafati, L Thorbek, A Schrøder-Nielsen and HJ De Boer. <br> "DNA metabarcoding for quality control of basil, oregano and paprika." Files: 1/ mapping.txt - mapping between the<br> <br> * file.fastq.gz--barcode pair <br> <br> and the <br> <br> * sample-replicate pair<br> <br> 2/ barcodes.txt -- file contains barcode sequences for demultiplexing reads 3/ primers.txt contains forward and reverse primer sequences for ITS1 and ITS2
DOI: 10.5281/zenodo.4730043
title: Raw data used in AC. Raclariu-Manolica et al. "DNA metabarcoding for quality control of basil, oregano and paprika."

description: Raw data used in: AC. Raclariu-Manolica, JA Anmarkrud, M Kierczak, N Rafati, L Thorbek, A Schrøder-Nielsen and HJ De Boer. <br> "DNA metabarcoding for quality control of basil, oregano and paprika." Files: 1/ mapping.txt - mapping between the<br> <br> * file.fastq.gz--barcode pair <br> <br> and the <br> <br> * sample-replicate pair<br> <br> 2/ barcodes.txt -- file contains barcode sequences for demultiplexing reads 3/ primers.txt contains forward and reverse primer sequences for ITS1 and ITS2
DOI: 10.25824/redu/4fnpqa
title: (1) Mapa das APP do alto curso da bacia hidrográfica do rio Jaguari.jpg

description: Fonte de dados: Folha topográfica IBGE 1: 50.000 e Imagens Sentinel 2A - 25/07/2020; Referência espacial: Datum SIRGAS 2000 Projeção: UTM Zona 23S Autoria: Natasha M. P Santos Financiamento: FAPESP
DOI: 10.25824/redu/xydhli
title: (1a) Mapa das APP do alto curso da bacia hidrográfica do rio Jaguari.tif

description: Fonte de dados: Folhas topográficas IBGE 1:50.000 e Imagens Sentinel 2A - 25/07/2020; Referência espacial: Datum SIRGAS 2000 Projeção: UTM Zona 23S Autoria: Natasha M. P Santos Financiamento: FAPESP
DOI: 10.25824/redu/51v9ux
title: (2) Mapa do uso e ocupação da terra nas APP no alto curso da bacia hidrográfica do rio Jaguari.jpg

description: Fonte de dados: Folhas topográficas IBGE 1:50.000 e imagens Sentinel 2A - 25/07/2020; Referência espacial: Datum SIRGAS 2000 Projeção: UTM Zona 23S Autoria: Natasha M. P Santos Financiamento: FAPESP
DOI: 10.6084/m9.figshare.14039465
title: Source Data for Figures in Adaptive Circuit Dynamics Across Human Cortex During Evidence Accumulation in Changing Environments

description: This dataset contains source data for all main-text figures, along with code for creating basic versions of the figures, for:<br>Murphy PR, Wilming N, Hernandez Bocanegra DC, Prat Ortega G & Donner TH (2021). Adaptive circuit dynamics across human cortex during evidence accumulation in changing environments. <em>Nature Neuroscience</em>. Online ahead of print.<br><br> All data are in Matlab .mat files and code is in Matlab .m files. Code tested on Matlab version R2015a.
DOI: 10.6084/m9.figshare.14039465.v1
title: Source Data for Figures in Adaptive Circuit Dynamics Across Human Cortex During Evidence Accumulation in Changing Environments

description: This dataset contains source data for all main-text figures, along with code for creating basic versions of the figures, for:<br>Murphy PR, Wilming N, Hernandez Bocanegra DC, Prat Ortega G & Donner TH (2021). Adaptive circuit dynamics across human cortex during evidence accumulation in changing environments. <em>Nature Neuroscience</em>. Online ahead of print.<br><br> All data are in Matlab .mat files and code is in Matlab .m files. Code tested on Matlab version R2015a.
DOI: 10.6084/m9.figshare.14039384.v1
title: Raw MEG Data for Adaptive Circuit Dynamics Across Human Cortex During Evidence Accumulation in Changing Environments

description: This dataset contains raw MEG data for:<br>Murphy PR, Wilming N, Hernandez Bocanegra DC, Prat Ortega G & Donner TH (2021). Adaptive circuit dynamics across human cortex during evidence accumulation in changing environments. <em>Nature Neuroscience</em>. Online ahead of print.<br><br>Each .zip contains one MEG recording in native CTF format, typically consisting of several blocks of the decision-making task described in the paper. These datasets are readable by, e.g., the FieldTrip Toolbox for Matlab (https://www.fieldtriptoolbox.org/) or python-mne (https://mne.tools/stable/index.html).<br> File naming scheme is <i>ID-SESS_Surprise_DATE_REC.ds</i>, where <i>ID</i> and <i>SESS</i> are the participant ID and session number that allow identification with behavioural and eye-tracking data also made available on Figshare. <br> To parse events etc. from these data, have a look at example code on https://github.com/DonnerLab/2021_Murphy_Adaptive-Circuit-Dynamics-Across-Human-Cortex. A good start would be `\motor_localizer\MEGpreprocessing.m`.
DOI: 10.6084/m9.figshare.14039384
title: Raw MEG Data for Adaptive Circuit Dynamics Across Human Cortex During Evidence Accumulation in Changing Environments

description: This dataset contains raw MEG data for:<br>Murphy PR, Wilming N, Hernandez Bocanegra DC, Prat Ortega G & Donner TH (2021). Adaptive circuit dynamics across human cortex during evidence accumulation in changing environments. <em>Nature Neuroscience</em>. Online ahead of print.<br><br>Each .zip contains one MEG recording in native CTF format, typically consisting of several blocks of the decision-making task described in the paper. These datasets are readable by, e.g., the FieldTrip Toolbox for Matlab (https://www.fieldtriptoolbox.org/) or python-mne (https://mne.tools/stable/index.html).<br> File naming scheme is <i>ID-SESS_Surprise_DATE_REC.ds</i>, where <i>ID</i> and <i>SESS</i> are the participant ID and session number that allow identification with behavioural and eye-tracking data also made available on Figshare. <br> To parse events etc. from these data, have a look at example code on https://github.com/DonnerLab/2021_Murphy_Adaptive-Circuit-Dynamics-Across-Human-Cortex. A good start would be `\motor_localizer\MEGpreprocessing.m`.
DOI: 10.5281/zenodo.3865626
title: Data used in Runge & Lindholm, Experiments confirm a dispersive phenotype associated with a natural gene drive system

description: The RAR archive contains CSV files and R files with the analyses published in the paper.
description: This study was funded by the Swiss National Science Foundation (31003A_160328) and the Claraz Stiftung.
DOI: 10.5281/zenodo.3865625
title: Data used in Runge & Lindholm, Experiments confirm a dispersive phenotype associated with a natural gene drive system

description: The RAR archive contains CSV files and R files with the analyses published in the paper.
description: This study was funded by the Swiss National Science Foundation (31003A_160328) and the Claraz Stiftung.
DOI: 10.6084/m9.figshare.14170432
title: Source Reconstructed MEG Data for Adaptive Circuit Dynamics Across Human Cortex During Evidence Accumulation in Changing Environments

description: This dataset contains source reconstructed MEG data for: Murphy PR, Wilming N, Hernandez Bocanegra DC, Prat Ortega G & Donner TH (2021). Adaptive circuit dynamics across human cortex during evidence accumulation in changing environments. <em>Nature Neuroscience</em>. Online ahead of print.<br><br> Each "*source_reconstructions*" .zip contains files for trial onset-aligned epochs (full-length trials composed of 12 evidence samples only), separately for low (1-35 Hz in steps of 1 Hz; "LF") and high (36-160 Hz in steps of 4 Hz; "HF") frequency TFR decompositions. Furthermore, each session is spread over a number of files that contain 100 trials each. Files from one epoch type can be safely concatenated in pandas.<br>Individual files can be read by using `pandas.read_hdf`. This will return a table that contains individual ROIs as columns and a multi-index that labels each data point. Specifically, the index contains a trial identifier ('trial'), a time identifier ('time', seconds relative to trial onset), an identifier for the TFR settings ('est_key') and a frequency identifier ('est_val'). See https://github.com/DonnerLab/2021_Murphy_Adaptive-Circuit-Dynamics-Across-Human-Cortex/tree/main/source_reconstruct/pymeg for code that makes and further processes datasets of this form. They are made with lcmv_peter.py and an example of further processing is sr_agg_parallel.py (in this case, aggregation of reconstructed over vertices within specified ROIs).<br>Each “*sr_behav.zip” contains behavioural (‘choices’), task (sample locations: ‘stimIn’; change-point positions: ‘pswitch’; generative distributions at end of each trial: ‘fdist’; and generative distributions per sample position: ‘distseq’) and minimal eye-tracking data (‘pupil’, ‘Xgaze’, ‘Ygaze’, all from only 0.57 s following sample onset) from the same trials in the source reconstructed datasets. Use the ‘trialID’ variable in combination with the ‘trial’ identifier in the source reconstructed datasets to align trials.<br>
DOI: 10.25824/redu/fe2zoq
title: (2)(a)Mapa do uso e ocupação da terra nas APP no alto curso da bacia hidrográfica do rio Jaguari.tif

description: Fonte de dados: Folhas topográficas IBGE 1:50.000 e imagens Sentinel 2A - 25/07/2020; Referência espacial: Datum SIRGAS 2000 Projeção: UTM Zona 23S Autoria: Natasha M. P Santos Financiamento: FAPESP
DOI: 10.6084/m9.figshare.14518806
title: Xinluzao1_ctg_final.fa.gz

description: Genome of Upland Cotton Cultivar
DOI: 10.6084/m9.figshare.14518806.v1
title: Xinluzao1_ctg_final.fa.gz

description: Genome of Upland Cotton Cultivar
DOI: 10.5284/1083485
title: Bridge over troubled water: The Roman finds from the River Tees at Piercebridge in context (Hella Eckardt and Philippa Walton)

description: This collection comprises specialist reports from Roman finds at Piercebridge, which are published in summary in the book Bridge over troubled water: The Roman finds from the River Tees at Piercebridge in context. When Roman objects are discovered in rivers across the north-western provinces of the Roman Empire, they are often interpreted as the accidental losses of travellers or as rubbish deposits revealed by fluvial erosion; this is in contrast to prehistoric assemblages, which are usually seen as ritual offerings. Our project challenges these assumptions by publishing an entire riverine artefactual assemblage for the first time and placing it into its archaeological context. British material has not previously been studied at all, and on the continent only exceptional assemblages like the large vessel hoard from Neupotz or high status objects like swords have been studied. To remedy this situation, we are publishing all the finds from the Tees at Roman Piercebridge (3,619 objects) as a Britannia monograph, including objects such as fishing weights and furniture fittings as well as gold jewellery and coinage. Interpretative chapters explore the significance of the different categories of finds while the individual objects are all recorded on the Portable Antiquities Scheme website (www.finds.org.uk). We employ Correspondence Analysis to compare the composition of the riverine assemblage to those excavated at nearby sites, and demonstrate that its chronological and functional profile differs significantly from settlement sites, making ritual deposition of at least some finds highly likely. There are also chapters on Roman riverine deposition and the significance of bridges across the Roman world, as well as the archaeological context of the discovery. The book is published both in hardcopy and as an Open Access book; here you can find reports by specialists on certain categories of the Piercebridge finds, which are only published in summary in the book.
DOI: 10.5281/zenodo.4722077
title: Varian iX 6 MV Extended Profiles

description: This data set contains 36 extended Varian Clinac iX off-axis profiles measured in a water tank. All measurements were performed at 90 cm source-to-surface distance. It is intended that these profiles will assist in modelling out-of-field doses in future treatment planning systems.
DOI: 10.5281/zenodo.4721998
title: Varian iX 6 MV Extended Profiles

description: This data set contains 36 extended Varian Clinac iX off-axis profiles measured in a water tank. All measurements were performed at 90 cm source-to-surface distance. It is intended that these profiles will assist in modelling out-of-field doses in future treatment planning systems.
DOI: 10.17608/k6.auckland.13152932.v2
title: Go with the flow: Population connectivity of the NZ scampi – raw data.

description: This is the raw GBS and particle modelling data that has been used in the article "Go with the flow: Population connectivity of the New Zealand deep sea lobster, <i>Metanephrops challengeri</i>".<br>'GBS_data.zip' are the raw sequencing files for each scampi individual used for the population genetics section of this study.<br>'NETCDF_data.zip' are the raw NETCDF files used for the hydrodynamic particle modelling section of this study.
DOI: 10.12751/g-node.d46ab7
title: Dataset - Mouse retinal ganglion cell responses under ivabradine

description: Data sets accompanying Bemme et al., Invest Ophthalmol Vis Sci 2017: Differential effects of HCN channel block on On and Off pathways in the retina as a potential cause for medication-induced phosphene perception.
description: IsSupplementTo: Bemme S, Weick M, Gollisch T (2017), Differential effects of HCN channel block on On and Off pathways in the retina as a potential cause for medication-induced phosphene perception, Invest Ophthalmol Vis Sci 58:4754-4767. (https://doi.org/10.1167/iovs.17-21572)
DOI: 10.17028/rd.lboro.14500482
title: Research Data for "Functional Group Introduction and Aromatic Unit Variation in a Set of π-Conjugated Macrocycles: Revealing the Central Role of Local and Global Aromaticity"

description: Research Data underlying the manuscript "Functional Group Introduction and Aromatic Unit Variation in a Set of π-Conjugated Macrocycles: Revealing the Central Role of Local and Global Aromaticity" by Martina Rimmele, Wojciech Nogala, Maryam Seif-Eddine, Maxie M. Roessler, Martin Heeney, Felix Plasser, and Florian Glöcklhofer<br>Content (<i>names of folders and files are given in</i> <b>bold face</b>).<br>Computations performed on the molecules <b>BCyc</b>, <b>BCyc-Et</b>, <b>NCyc-Et</b>, <b>ACyc-Et</b>, and <b>PCyc-Et</b> as described in the text.<br>The folder for each molecule contains subfolders for the individual electronic states:- <b>OPT_neut</b>: neutral singlet state- <b>OPT_Trip</b>: neutral triplet state- <b>OPT_2P</b>: charged state (2+)- <b>OPT_2M</b>: charged state (2-)- etc.<br>Each optimisation folder contains the following:- <b>qchem.in</b>: input for geometry optimisation- <b>final.xyz</b>: optimised geometry- <b>CHARAC/qchem[.in</b>,<b>.out]</b>: Input/output file for Hessian-free characterisation of stationary points- <b>SOLV/qchem[.in</b>,<b>.out]</b>: Input/output file for solvated calculation used to determine redox potentials- <b>VEXS/qchem[.in</b>,<b>.out]</b>: Input/output file for vertical excitation- <b>VEXS/libwfa_summ.txt</b>: Compact summary of excitation energies- <b>tNICS/gaussian[.com</b>,<b>.log]</b>: Input/output file for NICS computation underlying the VIST plots<br>
DOI: 10.17028/rd.lboro.14500482.v1
title: Research Data for "Functional Group Introduction and Aromatic Unit Variation in a Set of π-Conjugated Macrocycles: Revealing the Central Role of Local and Global Aromaticity"

description: Research Data underlying the manuscript "Functional Group Introduction and Aromatic Unit Variation in a Set of π-Conjugated Macrocycles: Revealing the Central Role of Local and Global Aromaticity" by Martina Rimmele, Wojciech Nogala, Maryam Seif-Eddine, Maxie M. Roessler, Martin Heeney, Felix Plasser, and Florian Glöcklhofer<br>Content (<i>names of folders and files are given in</i> <b>bold face</b>).<br>Computations performed on the molecules <b>BCyc</b>, <b>BCyc-Et</b>, <b>NCyc-Et</b>, <b>ACyc-Et</b>, and <b>PCyc-Et</b> as described in the text.<br>The folder for each molecule contains subfolders for the individual electronic states:- <b>OPT_neut</b>: neutral singlet state- <b>OPT_Trip</b>: neutral triplet state- <b>OPT_2P</b>: charged state (2+)- <b>OPT_2M</b>: charged state (2-)- etc.<br>Each optimisation folder contains the following:- <b>qchem.in</b>: input for geometry optimisation- <b>final.xyz</b>: optimised geometry- <b>CHARAC/qchem[.in</b>,<b>.out]</b>: Input/output file for Hessian-free characterisation of stationary points- <b>SOLV/qchem[.in</b>,<b>.out]</b>: Input/output file for solvated calculation used to determine redox potentials- <b>VEXS/qchem[.in</b>,<b>.out]</b>: Input/output file for vertical excitation- <b>VEXS/libwfa_summ.txt</b>: Compact summary of excitation energies- <b>tNICS/gaussian[.com</b>,<b>.log]</b>: Input/output file for NICS computation underlying the VIST plots<br>
DOI: 10.12751/g-node.0lngls
title: Dataset - Mouse retinal ganglion cell responses for analysis of chromatic integration

description: Data sets accompanying Khani and Gollisch, Nature Communications 2021: Linear and nonlinear chromatic integration in the mouse retina.
description: IsSupplementTo: Khani MH, Gollisch T (2021), Linear and nonlinear chromatic integration in the mouse retina, Nat Commun 12:1900. (https://doi.org/10.1038/s41467-021-22042-1)
DOI: 10.12751/g-node.2j3d2i
title: Dataset - Mouse retinal ganglion cell responses to natural images and spatial-integration analysis

description: Data sets accompanying Karamanlis and Gollisch, Journal of Neuroscience 2021: Nonlinear spatial integration underlies the diversity of retinal ganglion cell responses to natural images.
description: IsSupplementTo: Karamanlis D, Gollisch T (2021), Nonlinear spatial integration underlies the diversity of retinal ganglion cell responses to natural images, J Neurosci 41:3479-3498. (https://doi.org/10.1523/JNEUROSCI.3075-20.2021)
DOI: 10.5281/zenodo.4730278
title: Data and software for Endsley et al. "Satellite monitoring of global surface soil organic carbon dynamics using the SMAP Level 4 Carbon product"

description: Data and software for reproducing key results from: Endsley, K.A., J.S. Kimball, R.H. Reichle, J.D. Watts. "Satellite monitoring of global surface soil organic carbon dynamics using the SMAP Level 4 Carbon product." *Submitted to Journal of Geophysical Research: Biogeosciences.*<br> <br> Corresponding author: K. Arthur Endsley, arthur.endsley@ntsg.umt.edu
DOI: 10.5281/zenodo.4266453
title: Data and software for Endsley et al. "Satellite monitoring of global surface soil organic carbon dynamics using the SMAP Level 4 Carbon product"

description: Data and software for reproducing key results from: Endsley, K.A., J.S. Kimball, R.H. Reichle, J.D. Watts. "Satellite monitoring of global surface soil organic carbon dynamics using the SMAP Level 4 Carbon product." *Submitted to Journal of Geophysical Research: Biogeosciences.*<br> <br> Corresponding author: K. Arthur Endsley, arthur.endsley@ntsg.umt.edu
DOI: 10.25824/redu/jsthp4
title: (1) Mapa das APP do alto curso da bacia hidrográfica do rio Jaguari.jpg

description: Fonte de dados: Folha topográfica IBGE 1: 50.000 e Imagens Sentinel 2A - 25/07/2020; Referência espacial: Datum SIRGAS 2000 Projeção: UTM Zona 23S Autoria: Natasha M. P Santos Financiamento: FAPESP
DOI: 10.17863/cam.68889
title: Research data supporting "The Influence of an Inorganic Interlayer on Exciton Separation in Hybrid Solar Cells"

description: This work was supported by the ERC [grant number NOVOX ERC-2009-adG247276ERC], EPSRC [grant number RG53717 KJZA/098] and Studienstiftung des Deutschen Volkes.
DOI: 10.17863/cam.68890
title: Research data supporting "Altered Oxygen Utilisation in Rat Left Ventricle and Soleus after 14 Days, but not 2 Days, of Environmental Hypoxia"

description: Full dataset from paper "Altered Oxygen Utilisation in Rat Left Ventricle and Soleus after 14 Days, but not 2 Days, of Environmental Hypoxia", including respirometry, gene and protein expression data and enzyme activity assays.
description: This work was supported by the BBSRC [grant number BB/F016581/1].