cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25909/24117159
title: Who’s a pretty bird? Predicting the traded abundance of bird species in Australian online pet trade;associated data

description: Associated R-code and dataframes for the phylogenetic cross-validation performed in Hill et al. (2023).
DOI: 10.25909/24117159.v1
title: Who’s a pretty bird? Predicting the traded abundance of bird species in Australian online pet trade;associated data

description: Associated R-code and dataframes for the phylogenetic cross-validation performed in Hill et al. (2023).
DOI: 10.15468/dl.dfwuhb
title: Occurrence Download

description: A dataset containing 795538 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Xeno-canto - Bird sounds from around the world"
 ]
}

 The dataset includes 795538 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054230-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25909/24197571
title: Data for Kelp holdfast microclimates buffer invertebrate inhabitants from extreme temperatures

description: Please see the research publication for methodological details https://doi.org/10.1016/j.marenvres.2024.106523 The corresponding files for each section are as follows:Logger data: final_merged_data_method_modelCritical thermal limits: ctl dataRespiration measurements: snail correct rates, amphipod correct rates.The R files presens_demulti_v2 and Perry_respR_v3 contain the code for processing the respiration files and calculating the final respiration rates. The raw respiration data files are not uploaded (due to size and number of files) but are available on request.<br>
DOI: 10.25909/24197571.v3
title: Data for Kelp holdfast microclimates buffer invertebrate inhabitants from extreme temperatures

description: Please see the research publication for methodological details https://doi.org/10.1016/j.marenvres.2024.106523 The corresponding files for each section are as follows:Logger data: final_merged_data_method_modelCritical thermal limits: ctl dataRespiration measurements: snail correct rates, amphipod correct rates.The R files presens_demulti_v2 and Perry_respR_v3 contain the code for processing the respiration files and calculating the final respiration rates. The raw respiration data files are not uploaded (due to size and number of files) but are available on request.<br>
DOI: 10.25909/24266149
title: Australian Cereal Rust Control Program - Cereal Germplasm Planting Records 1991-2022

description: Planting records, including pedigree information and crossing numbers, for cereal plants grown between 1991 and 2022 during research conducted by the University of Adelaide under the Australian Cereal Rust Control Program.The Excel spreadsheet <i>Planting Records 1991-2022.xlsx</i> contains the dates of planting, the pedigree (together with crossing numbers), and the plant/pot numbers for the plantings, with each separate year catalogued in a separate tab of the spreadsheet.
DOI: 10.25909/24266149.v1
title: Australian Cereal Rust Control Program - Cereal Germplasm Planting Records 1991-2022

description: Planting records, including pedigree information and crossing numbers, for cereal plants grown between 1991 and 2022 during research conducted by the University of Adelaide under the Australian Cereal Rust Control Program.The Excel spreadsheet <i>Planting Records 1991-2022.xlsx</i> contains the dates of planting, the pedigree (together with crossing numbers), and the plant/pot numbers for the plantings, with each separate year catalogued in a separate tab of the spreadsheet.
DOI: 10.25909/24266161
title: Australian Cereal Rust Control Program - PCR Marker Test Workbooks 2000-2022

description: DNA marker results from Polymerase Chain Reaction (PCR) tests for leaf rust and stem rust, conducted as part of the Australian Cereal Rust Control Program by the University of Adelaide from 2000-2022.The zip file <i>PCR_Gels_Workbooks.zip</i> contains:Scanned laboratory workbooks for the PCR marker tests are available in PDF form, dating back to 2000.Gel photos corresponding to PCR marker tests taken during 2017-2022 are available in digitised form, mostly as Microsoft Powerpoint files (.pptx, containing the images and annotations), or in some cases as standalone image files (.jpg and .tif).The text file <i>files.txt</i> contains a listing of all of the files contained in the zip file, for convenience.
DOI: 10.25909/24266161.v1
title: Australian Cereal Rust Control Program - PCR Marker Test Workbooks 2000-2022

description: DNA marker results from Polymerase Chain Reaction (PCR) tests for leaf rust and stem rust, conducted as part of the Australian Cereal Rust Control Program by the University of Adelaide from 2000-2022.The zip file <i>PCR_Gels_Workbooks.zip</i> contains:Scanned laboratory workbooks for the PCR marker tests are available in PDF form, dating back to 2000.Gel photos corresponding to PCR marker tests taken during 2017-2022 are available in digitised form, mostly as Microsoft Powerpoint files (.pptx, containing the images and annotations), or in some cases as standalone image files (.jpg and .tif).The text file <i>files.txt</i> contains a listing of all of the files contained in the zip file, for convenience.
DOI: 10.25909/24266230
title: Australian Cereal Rust Control Program - RFLP Marker Test Workbooks 1994-2023

description: DNA marker results from Restricted Fragment Length Polymorphism (RFLP) tests for leaf rust and stem rust, conducted as part of the Australian Cereal Rust Control Program by the University of Adelaide during 1994-2023.The zip file <i>RFLP Gel Books.zip</i> contains the digitised laboratory notebooks for the RFLP marker test results (mostly available in PDF form for each book, but with Book 8 available as scanned page .jpg images instead). For convenience, the workbook files contained in the zip file are all listed in <i>files.txt</i>.
DOI: 10.25909/24266230.v1
title: Australian Cereal Rust Control Program - RFLP Marker Test Workbooks 1994-2023

description: DNA marker results from Restricted Fragment Length Polymorphism (RFLP) tests for leaf rust and stem rust, conducted as part of the Australian Cereal Rust Control Program by the University of Adelaide during 1994-2023.The zip file <i>RFLP Gel Books.zip</i> contains the digitised laboratory notebooks for the RFLP marker test results (mostly available in PDF form for each book, but with Book 8 available as scanned page .jpg images instead). For convenience, the workbook files contained in the zip file are all listed in <i>files.txt</i>.
DOI: 10.25909/24266236
title: Australian Cereal Rust Control Program - DArT Sequences

description: Diversity Arrays Technology (DArT) sequences for wheat, barley and grasses DNA markers, ordered during 2009-2014 and used during research in the Australian Cereal Rust Control Program by the University of Adelaide.The dataset includes the following files:Barley DArT sequences (<i>seq_clones_barley.fasta</i>)Wheat DArT sequences (in the zipped archive <i>Wheat DArT Sequences.zip</i>, containing <i>DART data.xlsx</i>, <i>seq_clones_wheat.fasta</i>, <i>seq_clones_wheat.txt</i>, <i>Triticarte-extract-Wheat-t-2010-07-26.csv</i> and <i>WheatDArTmapsVersion1.2.xls</i>)Aeg speltoides DArT sequences (<i>DArT Sequences Group 2 Aeg speltoides polymorphisms.docx</i>)Amblyopyrum DArT sequences (<i>DArT Sequences Group 6 Amblyopyrum polymorphisms.docx</i>)Exported markers from Triticarte order DW10-661 (<i>Report-DW10-661.xlsx</i>)Selected markers from Th. ponticum and Aeg speltoides (<i>Selected Group 2 and 6 DArT markers.xlsx</i>)DNA samples selected for DArT (<i>DNA samples for DArt.xlsx</i>)
DOI: 10.25909/24266236.v1
title: Australian Cereal Rust Control Program - DArT Sequences

description: Diversity Arrays Technology (DArT) sequences for wheat, barley and grasses DNA markers, ordered during 2009-2014 and used during research in the Australian Cereal Rust Control Program by the University of Adelaide.The dataset includes the following files:Barley DArT sequences (<i>seq_clones_barley.fasta</i>)Wheat DArT sequences (in the zipped archive <i>Wheat DArT Sequences.zip</i>, containing <i>DART data.xlsx</i>, <i>seq_clones_wheat.fasta</i>, <i>seq_clones_wheat.txt</i>, <i>Triticarte-extract-Wheat-t-2010-07-26.csv</i> and <i>WheatDArTmapsVersion1.2.xls</i>)Aeg speltoides DArT sequences (<i>DArT Sequences Group 2 Aeg speltoides polymorphisms.docx</i>)Amblyopyrum DArT sequences (<i>DArT Sequences Group 6 Amblyopyrum polymorphisms.docx</i>)Exported markers from Triticarte order DW10-661 (<i>Report-DW10-661.xlsx</i>)Selected markers from Th. ponticum and Aeg speltoides (<i>Selected Group 2 and 6 DArT markers.xlsx</i>)DNA samples selected for DArT (<i>DNA samples for DArt.xlsx</i>)
DOI: 10.25909/24266248
title: Australian Cereal Rust Control Program - Rust Test Results 2002-2022

description: Results of testing for stem rust, leaf rust and stripe rust on cereal crop varieties, conducted by the University of Adelaide under the Australian Cereal Rust Control Program.The Excel spreadsheet <i>Rust Tests.xlsx</i> contains the results of the rust tests dating from 2002 through to 2022, with the plant lines, pot numbers (and in many cases, their respective parent pot numbers) and resistance/susceptibility scores listed. Testing months are split across the spreadsheet tabs.
DOI: 10.25909/24266248.v1
title: Australian Cereal Rust Control Program - Rust Test Results 2002-2022

description: Results of testing for stem rust, leaf rust and stripe rust on cereal crop varieties, conducted by the University of Adelaide under the Australian Cereal Rust Control Program.The Excel spreadsheet <i>Rust Tests.xlsx</i> contains the results of the rust tests dating from 2002 through to 2022, with the plant lines, pot numbers (and in many cases, their respective parent pot numbers) and resistance/susceptibility scores listed. Testing months are split across the spreadsheet tabs.
DOI: 10.25909/24268393
title: Australian Cereal Rust Control Program - Waite Birdcage Field Plots 2006-2018

description: Planting records and results from cereal rust experiments at the Waite Birdcage, conducted by the University of Adelaide between 2006-2018 under the Australian Cereal Rust Control Program. The Excel spreadsheets (.xls and .xlsx) contain columns for the Plot Numbers, the Line planted and the Pot Number, together with successive observations of the plant growth, plant vigour, and disease assessment.
DOI: 10.25909/24268393.v1
title: Australian Cereal Rust Control Program - Waite Birdcage Field Plots 2006-2018

description: Planting records and results from cereal rust experiments at the Waite Birdcage, conducted by the University of Adelaide between 2006-2018 under the Australian Cereal Rust Control Program. The Excel spreadsheets (.xls and .xlsx) contain columns for the Plot Numbers, the Line planted and the Pot Number, together with successive observations of the plant growth, plant vigour, and disease assessment.
DOI: 10.25909/24268417
title: Australian Cereal Rust Control Program - Freeling Wheat 2012 Field Plot Yield Tests

description: Field plot yield test data for the Angus, Westonia, and HUW234 wheat lines, for experiments conducted in Freeling, SA in 2012 by the University of Adelaide as part of the Australian Cereal Rust Control Program.The Excel spreadsheet <i>Freeling genotypes 2008.xlsx</i> contains data collected for the background of the wheat lines (including the line name and the seed source). The lines were planted on the 30th of May 2012 across 48 plots, and the yield (in grams) was measured for each plot.
DOI: 10.25909/24268417.v1
title: Australian Cereal Rust Control Program - Freeling Wheat 2012 Field Plot Yield Tests

description: Field plot yield test data for the Angus, Westonia, and HUW234 wheat lines, for experiments conducted in Freeling, SA in 2012 by the University of Adelaide as part of the Australian Cereal Rust Control Program.The Excel spreadsheet <i>Freeling genotypes 2008.xlsx</i> contains data collected for the background of the wheat lines (including the line name and the seed source). The lines were planted on the 30th of May 2012 across 48 plots, and the yield (in grams) was measured for each plot.
DOI: 10.25909/24268426
title: Australian Cereal Rust Control Program - Combined Seed Stocks Delivered to AGG 2001-2022

description: Lists of the seed stocks provided to the Australian Grains Genebank (AGG) under the Australian Cereal Rust Control Program during 2001-2022. The Excel spreadsheet tabulates the seed stocks by genotype/pedigree, including years, pot/cross numbers, and parent listings.
DOI: 10.25909/24268426.v1
title: Australian Cereal Rust Control Program - Combined Seed Stocks Delivered to AGG 2001-2022

description: Lists of the seed stocks provided to the Australian Grains Genebank (AGG) under the Australian Cereal Rust Control Program during 2001-2022. The Excel spreadsheet tabulates the seed stocks by genotype/pedigree, including years, pot/cross numbers, and parent listings.
DOI: 10.34740/kaggle/dsv/14171334
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.25909/24268432
title: Australian Cereal Rust Control Program - Gene Expression Probe Lists

description: Lists of gene expression probes used by different groups (groups 1-4, 6,7) in the cereal cytogenetics research conducted under the Australian Cereal Rust Control Program, including clone names and excision enzymes.
DOI: 10.25909/24268432.v1
title: Australian Cereal Rust Control Program - Gene Expression Probe Lists

description: Lists of gene expression probes used by different groups (groups 1-4, 6,7) in the cereal cytogenetics research conducted under the Australian Cereal Rust Control Program, including clone names and excision enzymes.
DOI: 10.25909/24268441
title: Australian Cereal Rust Control Program - EST-based Marker Tests 2014-2018

description: DNA marker results for EST-based marker tests for leaf rust and stem rust, conducted as part of the Australian Cereal Rust Control Program by the University of Adelaide from 2014-2018.The zip file <i>EST_Markers.zip</i> contains gel photos for the EST marker tests, available in digitised form as Microsoft Powerpoint files (.pptx, containing the embedded images as well as annotations), or in some cases as standalone workbook scans (.jpg images and PDFs). The text file <i>files.txt</i> contains a listing of all of the files contained in the zip file, for convenience.
DOI: 10.25909/24268441.v1
title: Australian Cereal Rust Control Program - EST-based Marker Tests 2014-2018

description: DNA marker results for EST-based marker tests for leaf rust and stem rust, conducted as part of the Australian Cereal Rust Control Program by the University of Adelaide from 2014-2018.The zip file <i>EST_Markers.zip</i> contains gel photos for the EST marker tests, available in digitised form as Microsoft Powerpoint files (.pptx, containing the embedded images as well as annotations), or in some cases as standalone workbook scans (.jpg images and PDFs). The text file <i>files.txt</i> contains a listing of all of the files contained in the zip file, for convenience.
DOI: 10.25909/24268459
title: Australian Cereal Rust Control Program - Quarantine Accessions 2000-2015

description: List of quarantine accessions between 2000 and 2015 for the Australian Cereal Rust Control Program and predecessor programs carried out at the University of Adelaide's Waite Campus. The Excel spreadsheet <i>Quarantine Accessions.xls</i> tabulates each accession, and lists the type (amphiploid/species), the dates that the plants were planted in quarantine/harvested from quarantine, and results of the stem rust, leaf rust and stripe rust reactions for the rust tests.
DOI: 10.25909/24268459.v1
title: Australian Cereal Rust Control Program - Quarantine Accessions 2000-2015

description: List of quarantine accessions between 2000 and 2015 for the Australian Cereal Rust Control Program and predecessor programs carried out at the University of Adelaide's Waite Campus. The Excel spreadsheet <i>Quarantine Accessions.xls</i> tabulates each accession, and lists the type (amphiploid/species), the dates that the plants were planted in quarantine/harvested from quarantine, and results of the stem rust, leaf rust and stripe rust reactions for the rust tests.
DOI: 10.25909/24268477
title: Australian Cereal Rust Control Program - Historical Waite Accessions Book (Digitised)

description: Digitised scan of the historical Waite Accessions book, documenting the accessions between 1960 and 1998. The book is ruled into tabular columns, noting the acquisition number, pedigree, date, variety, source and stated reason for each accession.This book stands as a historical record of the plant breeding and crop development research undertaken at the Waite campus of the University of Adelaide dating back to the early 1960s, and contains accessions relevant to the Australian Cereal Rust Control Program and its predecessor programs. The book has been digitised by Dr Ian Dundas and members of the Waite cereal cytogenetics team, and is released openly and freely available on the University of Adelaide's Figshare data repository.
DOI: 10.25909/24268477.v1
title: Australian Cereal Rust Control Program - Historical Waite Accessions Book (Digitised)

description: Digitised scan of the historical Waite Accessions book, documenting the accessions between 1960 and 1998. The book is ruled into tabular columns, noting the acquisition number, pedigree, date, variety, source and stated reason for each accession.This book stands as a historical record of the plant breeding and crop development research undertaken at the Waite campus of the University of Adelaide dating back to the early 1960s, and contains accessions relevant to the Australian Cereal Rust Control Program and its predecessor programs. The book has been digitised by Dr Ian Dundas and members of the Waite cereal cytogenetics team, and is released openly and freely available on the University of Adelaide's Figshare data repository.
DOI: 10.25909/24268504
title: Australian Cereal Rust Control Program - Cross and Recombinant Summaries

description: Digital notebook (Microsoft OneNote) summaries from 2014-2023 for the Australian Cereal Rust Control Program work, cataloguing the germplasm advancement for each of the wild cereal species derivatives and recombinants, including new crosses from international species. These notebooks have been saved as PDFs.Crosses summaries include:Aegilops geniculata (<i>Crosses- Ae geniculata.pdf</i>)Aegilops peregrina (<i>Crosses- Ae peregina.pdf</i>)Aegilops searsii (<i>Crosses- Ae searsii.pdf</i>)Aegilops speltoides (<i>Crosses-Ae speltoides.pdf</i>)South Australian Rye (<i>Crosses- rye.pdf</i>)T. dicoccoides (<i>Crosses- T dicoccoides.pdf</i>)Triticale (<i>Crosses- Triticale.pdf</i>)Agropyron & Thinopyrum (<i>Crosses-Agropyron.pdf</i>)Recombinants summaries include:Aegilops caudata (<i>Recombinants- Ae caudata.pdf</i>)Aegilops mutica (<i>Recombinants- Ae mutica.pdf</i>)Aegilops peregrina (<i>Recombinants- Ae peregrina.pdf</i>)Aegilops searsii (<i>Recombinants- Ae searsii.pdf</i>)Aegilops speltoides (<i>Recombinants- Ae speltoides I.pdf</i> & <i>Recombinants- Ae speltoides II.pdf</i>)Aegilops uniaristata (<i>Recombinants- Ae uniaristata.pdf</i>)T. timopheevii (<i>Recombinants- T timopheevii.pdf</i>)
DOI: 10.25909/24268504.v1
title: Australian Cereal Rust Control Program - Cross and Recombinant Summaries

description: Digital notebook (Microsoft OneNote) summaries from 2014-2023 for the Australian Cereal Rust Control Program work, cataloguing the germplasm advancement for each of the wild cereal species derivatives and recombinants, including new crosses from international species. These notebooks have been saved as PDFs.Crosses summaries include:Aegilops geniculata (<i>Crosses- Ae geniculata.pdf</i>)Aegilops peregrina (<i>Crosses- Ae peregina.pdf</i>)Aegilops searsii (<i>Crosses- Ae searsii.pdf</i>)Aegilops speltoides (<i>Crosses-Ae speltoides.pdf</i>)South Australian Rye (<i>Crosses- rye.pdf</i>)T. dicoccoides (<i>Crosses- T dicoccoides.pdf</i>)Triticale (<i>Crosses- Triticale.pdf</i>)Agropyron & Thinopyrum (<i>Crosses-Agropyron.pdf</i>)Recombinants summaries include:Aegilops caudata (<i>Recombinants- Ae caudata.pdf</i>)Aegilops mutica (<i>Recombinants- Ae mutica.pdf</i>)Aegilops peregrina (<i>Recombinants- Ae peregrina.pdf</i>)Aegilops searsii (<i>Recombinants- Ae searsii.pdf</i>)Aegilops speltoides (<i>Recombinants- Ae speltoides I.pdf</i> & <i>Recombinants- Ae speltoides II.pdf</i>)Aegilops uniaristata (<i>Recombinants- Ae uniaristata.pdf</i>)T. timopheevii (<i>Recombinants- T timopheevii.pdf</i>)
DOI: 10.25909/24268522
title: Australian Cereal Rust Control Program - TNAC Primers Ordered

description: TNAC Primers ordered by the cereal cytogenetics groups 1-7 under the Australian Cereal Rust Control Program work conducted at the University of Adelaide. The Excel files list the oligo/marker names and the sequences ordered for each group in 2018.
DOI: 10.25909/24268522.v1
title: Australian Cereal Rust Control Program - TNAC Primers Ordered

description: TNAC Primers ordered by the cereal cytogenetics groups 1-7 under the Australian Cereal Rust Control Program work conducted at the University of Adelaide. The Excel files list the oligo/marker names and the sequences ordered for each group in 2018.
DOI: 10.25909/24323299
title: Graph Pad prism files of all data published in Roennfeldt et al. (2023). Data points for each experiment represents the mean of an individual replicate (and thus each experiment was completed in triplicate with the mean +/- standard deviation graphed).

description: The Hypoxia Inducible Factor (HIF) transcription factors are imperative for cell adaption to low oxygen conditions and development, however, they also contribute to ischaemic disease and cancer. To identify novel genetic regulators which target the HIF pathway or small molecules for therapeutic use, cell-based reporter systems are commonly used. Here, we present a new, highly sensitive and versatile reporter system, NanoFIRE; a NanoLuciferase and Fluorescent Integrated Reporter Element. Under the control of a Hypoxic Response Element (HRE-NanoFIRE), this system is a robust sensor of HIF activity within cells and potently responds to both hypoxia and chemical inducers of the HIF pathway in a highly reproducible and sensitive manner, consistently achieving 20 to 150-fold induction across different cell types and a Z’ score &gt; 0.5. We demonstrate that the NanoFIRE system is adaptable via substitution of the response element controlling NanoLuciferase and show that it can report on the activity of the transcriptional regulator Factor Inhibiting HIF, and an unrelated transcription factor, the Progesterone Receptor. Furthermore, the lentivirus-mediated stable integration of NanoFIRE highlights the versatility of this system across a wide range of cell types, including primary cells. Together, these finding demonstrate NanoFIRE is a robust reporter system for the investigation of HIF and other transcription factor mediated signalling pathways in cells, with applications in high throughput screening for the identification of novel small molecule and genetic regulators.