cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc25rn5s
title: CCDC 2018725: Experimental Crystal Structure Determination

description: Related Article: Fuming Xiao, Mengzhu Wang, Yunxiang Lei, Wenbo Dai, Yunbing Zhou, Miaochang Liu, Wenxia Gao, Xiaobo Huang, Huayue Wu|2020|J.Mater.Chem.C|8|17410|doi:10.1039/D0TC03980B
DOI: 10.5517/ccdc.csd.cc25rn6t
title: CCDC 2018726: Experimental Crystal Structure Determination

description: Related Article: Fuming Xiao, Mengzhu Wang, Yunxiang Lei, Wenbo Dai, Yunbing Zhou, Miaochang Liu, Wenxia Gao, Xiaobo Huang, Huayue Wu|2020|J.Mater.Chem.C|8|17410|doi:10.1039/D0TC03980B
DOI: 10.5517/ccdc.csd.cc25rn7v
title: CCDC 2018727: Experimental Crystal Structure Determination

description: Related Article: Fuming Xiao, Mengzhu Wang, Yunxiang Lei, Wenbo Dai, Yunbing Zhou, Miaochang Liu, Wenxia Gao, Xiaobo Huang, Huayue Wu|2020|J.Mater.Chem.C|8|17410|doi:10.1039/D0TC03980B
DOI: 10.6084/m9.figshare.13536506
title: Software Defect Prediction Dataset

description: 18 PROMISE repository datasets containing 20 OO metrics as independent features and defect-proneness of class as dependent variable.<br>
DOI: 10.5281/zenodo.4423095
title: Particle-in-cell Simulation of the Neutrino Fast Flavor Instability

description: 1D_fiducial.tgz contains the input parameters and simulation output data from the fiducial simulation. Each timestamp with output data is stored in a plt* directory. scripts.tgz contains the data reduction and plotting scripts used in the paper. We require yt to read the data with our scripts. inputs.tgz contains input files for each of the simulations in the paper. The test problem inputs (MSW, bipolar, homogeneous FFI, inhomogeneous FFI) are part of the test suite in Emu. Simulations are run using the version of Emu (v1.1) at http://doi.org/10.5281/zenodo.4423166 or https://github.com/AMReX-Astro/Emu.
description: {"references": ["http://doi.org/10.5281/zenodo.4423166"]}
DOI: 10.5281/zenodo.4423094
title: Particle-in-cell Simulation of the Neutrino Fast Flavor Instability

description: 1D_fiducial.tgz contains the input parameters and simulation output data from the fiducial simulation. Each timestamp with output data is stored in a plt* directory. scripts.tgz contains the data reduction and plotting scripts used in the paper. We require yt to read the data with our scripts. inputs.tgz contains input files for each of the simulations in the paper. The test problem inputs (MSW, bipolar, homogeneous FFI, inhomogeneous FFI) are part of the test suite in Emu. Simulations are run using the version of Emu (v1.1) at http://doi.org/10.5281/zenodo.4423166 or https://github.com/AMReX-Astro/Emu.
description: {"references": ["http://doi.org/10.5281/zenodo.4423166"]}
DOI: 10.5523/bris.181ejam8xizxp2pbtk6jnz5tbj
title: DHHB Sunscreen Photochemistry
title: DHHB dynamics

description: Ultrafast transient absorption spectroscopy data for the DHHB sunscreen in four different solvents.
DOI: 10.5281/zenodo.4311165
title: Adjudicating national context – elements of legal pluralism in the practice(s) of the European Court of Human Rights?

description: Dataset for submission til German Law Journal. See Readme.txt for details.
DOI: 10.25646/7821
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.6084/m9.figshare.13536611
title: research_data

description: VLF data
DOI: 10.5258/soton/d1664
title: Dataset for Preferences for Air Quality Improvement in China: Evidence from Discrete Choice Experiments

description: This is the original dataset used in the analysis of the thesis 'Preferences for Air Quality Improvement in China: Evidence from Discrete Choice Experiments'. This dataset includes data about registered respondents' attitudes towards air pollution, their preferred choices in discrete choice experiment scenarios, answers to post-experimental questions and demographic questions. Data can only be shared upon request to Bona fide researchers, subject to registration and ethical approval after 29/12/2023. http://library.soton.ac.uk/datarequest
DOI: 10.6084/m9.figshare.13536626
title: Supplementary Material for: Impact of Liver Test Abnormalities and Chronic Liver Disease on the Clinical Outcomes of Patients Hospitalized with COVID-19

description: <b><i>Background and Aims:</i></b> The impact of SARS-CoV-2 infection on the liver and the possibility of chronic liver disease (CLD) as a risk factor for COVID-19 severity is not fully understood. Our goal was to describe clinical outcomes of COVID-19 inpatients regarding the presence of abnormal liver tests and CLD. <b><i>Methods:</i></b> A retrospective analysis of patients with SARS-CoV-2 infection, hospitalized in a tertiary center in Portugal, was performed. Studied outcomes were disease and hospitalization length, COVID-19 severity, admission to intensive care unit (ICU) and mortality, analyzed by the presence of abnormal liver tests and CLD. <b><i>Results:</i></b> We included 317 inpatients with a mean age of 70.4 years, 50.5% males. COVID-19 severity was moderate to severe in 57.4% and critical in 12.9%. The mean disease length was 37.8 days, the median hospitalization duration 10.0 days and overall mortality 22.8%. At admission, 50.3% showed abnormal liver tests, and 41.5% showed elevated aminotransferase levels, from which 75.4% were mild. Elevated aminotransferase levels at admission were associated with COVID-19 severity (78.7 vs. 63.3%, <i>p</i> = 0.01), ICU admission (13.1 vs. 5.92%, <i>p</i> = 0.034) and increased mortality (25.8 vs. 13.3%, <i>p</i> = 0.007). However, in a subgroup analysis, only aspartate transaminase (AST) was associated with these worse outcomes. Alkaline phosphatase was elevated in 11.4% of the patients and was associated with critical COVID-19 (21.1 vs. 9.92%, <i>p</i> = 0.044) and mortality (20.4 vs. 9.52%, <i>p</i> = 0.025), while 24.6% of the patients showed elevated γ-glutamyl transferase, which was associated with ICU admission (42.3 vs. 22.8%, <i>p</i> = 0.028). Fourteen patients had baseline CLD (4.42%), 3 with liver cirrhosis. Alcohol (<i>n</i> = 6) and nonalcoholic fatty liver disease (<i>n</i> = 6) were the most frequent etiologies. CLD patients had critical COVID-19 in 21.4% (<i>p</i> = 0.237), mean disease length of 36.6 days (<i>p</i> = 0.291), median hospitalization duration of 11.5 days (<i>p</i> = 0.447) and a mortality rate of 28.6% (<i>p</i> = 0.595), which increased to 66.7% among cirrhotic patients (<i>p</i> = 0.176). <b><i>Conclusions:</i></b> Liver test abnormalities in COVID-19 patients were frequent but most commonly mild. AST, but not alanine transaminase, was associated with worse clinical outcomes, such as COVID-19 severity and mortality, probably indicating these outcomes were independent of liver injury. A low prevalence of CLD was seen, and a clear impact on COVID-19 outcomes was not seen.
DOI: 10.6084/m9.figshare.13536626.v1
title: Supplementary Material for: Impact of Liver Test Abnormalities and Chronic Liver Disease on the Clinical Outcomes of Patients Hospitalized with COVID-19

description: <b><i>Background and Aims:</i></b> The impact of SARS-CoV-2 infection on the liver and the possibility of chronic liver disease (CLD) as a risk factor for COVID-19 severity is not fully understood. Our goal was to describe clinical outcomes of COVID-19 inpatients regarding the presence of abnormal liver tests and CLD. <b><i>Methods:</i></b> A retrospective analysis of patients with SARS-CoV-2 infection, hospitalized in a tertiary center in Portugal, was performed. Studied outcomes were disease and hospitalization length, COVID-19 severity, admission to intensive care unit (ICU) and mortality, analyzed by the presence of abnormal liver tests and CLD. <b><i>Results:</i></b> We included 317 inpatients with a mean age of 70.4 years, 50.5% males. COVID-19 severity was moderate to severe in 57.4% and critical in 12.9%. The mean disease length was 37.8 days, the median hospitalization duration 10.0 days and overall mortality 22.8%. At admission, 50.3% showed abnormal liver tests, and 41.5% showed elevated aminotransferase levels, from which 75.4% were mild. Elevated aminotransferase levels at admission were associated with COVID-19 severity (78.7 vs. 63.3%, <i>p</i> = 0.01), ICU admission (13.1 vs. 5.92%, <i>p</i> = 0.034) and increased mortality (25.8 vs. 13.3%, <i>p</i> = 0.007). However, in a subgroup analysis, only aspartate transaminase (AST) was associated with these worse outcomes. Alkaline phosphatase was elevated in 11.4% of the patients and was associated with critical COVID-19 (21.1 vs. 9.92%, <i>p</i> = 0.044) and mortality (20.4 vs. 9.52%, <i>p</i> = 0.025), while 24.6% of the patients showed elevated γ-glutamyl transferase, which was associated with ICU admission (42.3 vs. 22.8%, <i>p</i> = 0.028). Fourteen patients had baseline CLD (4.42%), 3 with liver cirrhosis. Alcohol (<i>n</i> = 6) and nonalcoholic fatty liver disease (<i>n</i> = 6) were the most frequent etiologies. CLD patients had critical COVID-19 in 21.4% (<i>p</i> = 0.237), mean disease length of 36.6 days (<i>p</i> = 0.291), median hospitalization duration of 11.5 days (<i>p</i> = 0.447) and a mortality rate of 28.6% (<i>p</i> = 0.595), which increased to 66.7% among cirrhotic patients (<i>p</i> = 0.176). <b><i>Conclusions:</i></b> Liver test abnormalities in COVID-19 patients were frequent but most commonly mild. AST, but not alanine transaminase, was associated with worse clinical outcomes, such as COVID-19 severity and mortality, probably indicating these outcomes were independent of liver injury. A low prevalence of CLD was seen, and a clear impact on COVID-19 outcomes was not seen.
DOI: 10.5519/qd.7kshfsqg
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.13536605.v1
title: Learning strategies and their correlation with academic success in biology and physiology examinations during the preclinical years of medical school

description: <b>Background: </b>Efficient learning is essential for successful completion of the medical degree and students use a variety of strategies to cope with university requirements. However, strategies that lead to academic success have hardly been explored. We therefore evaluated the individual learning approaches used by a cohort of medical students in their first and second preclinical years and analyzed possible correlations with examination scores. <b>Methods: </b>107 students participated in our longitudinal survey on cognitive, meta-cognitive and resource-oriented learning strategies using the LIST-questionnaire (Lernstrategien im Studium). The students were surveyed twice while in their first and second year of medical school, respectively and academic performances were assessed as scores obtained in two examinations written shortly after the LIST surveys. Statistical evaluations included comparisons and cluster analyses. <b>Results:</b> We here identified four different patterns of learning strategy combinations, describing the relaxed, diligent, hard-working, and sociable learners. About half of the students stayed true to their initially registered pattern of learning strategy combinations while 53 students underwent a change between the first and second surveys. Changes were predominantly made between the <i>relaxed</i> and the <i>sociable</i> and between the <i>diligent</i> and the <i>hard-working</i> learners, respectively. Examination results suggested that the <i>diligent </i>and <i>hard-working </i>learners were academically more successful than the <i>relaxed</i> and <i>sociable</i> ones. <b> </b> <b>Conclusion:</b> Early habits of sociable learning were quickly abandoned however, not in favor of more successful patterns. It is therefore essential to develop interventions on learning skills that have a lasting impact on the pattern of the students´ learning strategy combinations.
DOI: 10.6084/m9.figshare.13536605
title: Learning strategies and their correlation with academic success in biology and physiology examinations during the preclinical years of medical school

description: <b>Background: </b>Efficient learning is essential for successful completion of the medical degree and students use a variety of strategies to cope with university requirements. However, strategies that lead to academic success have hardly been explored. We therefore evaluated the individual learning approaches used by a cohort of medical students in their first and second preclinical years and analyzed possible correlations with examination scores. <b>Methods: </b>107 students participated in our longitudinal survey on cognitive, meta-cognitive and resource-oriented learning strategies using the LIST-questionnaire (Lernstrategien im Studium). The students were surveyed twice while in their first and second year of medical school, respectively and academic performances were assessed as scores obtained in two examinations written shortly after the LIST surveys. Statistical evaluations included comparisons and cluster analyses. <b>Results:</b> We here identified four different patterns of learning strategy combinations, describing the relaxed, diligent, hard-working, and sociable learners. About half of the students stayed true to their initially registered pattern of learning strategy combinations while 53 students underwent a change between the first and second surveys. Changes were predominantly made between the <i>relaxed</i> and the <i>sociable</i> and between the <i>diligent</i> and the <i>hard-working</i> learners, respectively. Examination results suggested that the <i>diligent </i>and <i>hard-working </i>learners were academically more successful than the <i>relaxed</i> and <i>sociable</i> ones. <b> </b> <b>Conclusion:</b> Early habits of sociable learning were quickly abandoned however, not in favor of more successful patterns. It is therefore essential to develop interventions on learning skills that have a lasting impact on the pattern of the students´ learning strategy combinations.
DOI: 10.5258/soton/d1673
title: Dataset for: Germanium-on-Carborundum Surface Phonon-Polariton Infrared Metamaterial

description: Data supporting publication "Germanium-on-Carborundum Surface Phonon-Polariton Infrared Metamaterial" in Advanced Optical Materials. doi.org/10.1002/adom.202001652
DOI: 10.5281/zenodo.4419527
title: Granja et al. GSE139369 mixed-phenotype acute leukemia for Besca

description: The gene expression matrices were downloaded from GEO (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE139369), originally published by Granja JM, Klemm S, McGinnis LM, Kathiria AS et al. Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia. Nat Biotechnol 2019 Dec;37(12):1458-1465. PMID: 31792411. Individual raw matrices were merged to be uploaded directly with Besca. We then reprocessed the dataset using the Besca package (https://github.com/bedapub/besca). Raw processed h5ad is available. Processed and annotated h5ad was annotated using the notebook available at https://github.com/bedapub/besca_publication_results/tree/master/hematopoietic/Granja2019 Citeseq data raw data is available under Granja2019_adt_raw.h5ad. The results of CLR/DSB normalization with it associated clustering and UMAP were added to the annotated h5ad file.
DOI: 10.5281/zenodo.3933885
title: Granja et al. GSE139369 mixed-phenotype acute leukemia for Besca

description: The gene expression matrices were downloaded from GEO (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE139369), originally published by Granja JM, Klemm S, McGinnis LM, Kathiria AS et al. Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia. Nat Biotechnol 2019 Dec;37(12):1458-1465. PMID: 31792411. Individual raw matrices were merged to be uploaded directly with Besca. We then reprocessed the dataset using the Besca package (https://github.com/bedapub/besca). Raw processed h5ad is available. Processed and annotated h5ad was annotated using the notebook available at https://github.com/bedapub/besca_publication_results/tree/master/hematopoietic/Granja2019 Citeseq data raw data is available under Granja2019_adt_raw.h5ad. The results of CLR/DSB normalization with it associated clustering and UMAP were added to the annotated h5ad file.
DOI: 10.5286/isis.e.rb2010777-2
title: Self-Assembled Floating Supported Bilayers as a Tool for in situ Studies on Integral Membrane Proteins

description: We have developed a novel and readily deployable sample system for the study of planar bio-membranes under biologically accurate in vitro conditions. The next conceptual leap in the development of this new novel, sophisticated and relevant sample system is the incorporation of integral membrane proteins (IMPs). Here, using neutron reflectometry, we wish to engage in full study into the deposition and characterisation of a range of IMP containing self-assembled floating supported membranes with differing characteristics to elucidate the range and complexity of samples which are amenable to study using this sample system to aid future developments and applications.
DOI: 10.5258/soton/d1680
title: Dataset for Optimal control of Raman pulse sequences for atom interferometry

description: Dataset supports: Saywell, J. C., Carey, M., Belal, M., Kuprov, I., & Freegarde, T. (2020). Optimal control of Raman pulse sequences for atom interferometry. Journal of Physics B, 53(8), 1-10. [085006]. 10.1088/1361-6455/ab6df6 Paper relates to the demonstration of optimised Raman pulses in atom interferometry using a laser-cooled sample of rubidium-85 atoms. These pulses improve the pulse fidelity and fringe contrast of atom interferometers.
DOI: 10.15468/2d9wnx
title: Asian cave-adapted diplurans, with the description of two new genera and four new species (Arthropoda, Hexapoda, Entognatha)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Sendra, Alberto, Komeri?ki, Ana, Lips, Josiane, Luan, Yunxia, Selfa, Jes?s, Jim?nez-Valverde, Alberto (2021): Asian cave-adapted diplurans, with the description of two new genera and four new species (Arthropoda, Hexapoda, Entognatha). European Journal of Taxonomy 731: 1-46, DOI: https://doi.org/10.5852/ejt.2021.731.1199
DOI: 10.5258/soton/d1687
title: Dataset for: Machine learning for multi-dimensional optimisation and predictive visualisation of laser machining

description: This dataset contains the measurements underlying the figures in the following publication (see readme file for more information): MCDonnell et al, 'Machine learning for multi-dimensional optimisation and predictive visualisation of laser machining', Journal of Inteligent Manufacturing. doi:10.1007/s10845-020-01717-4
DOI: 10.5281/zenodo.4382712
title: Supplementary data for calcium-vesicles perform active diffusion in the sea urchin embryo during larval biomineralization

description: <strong>Supplementary datasets for the paper Calcium-vesicles perform active diffusion in the sea urchin embryo during larval biomineralization.</strong> Two deskewed and deconvolved lattice light-sheet datasets (100 frames each) from the live-cell experiments are available, a control embryo dataset (01-07-2016_TimeLapse4_DMSO_21hrs_Calcein_FM464) and a VEGFR inhibited dataset (24-06-2016_Timelapse1_Axtinib_150_19hrs_Calcein_FM464). These datasets were used for collecting size and motion statistics. The control embryo dataset is available in raw microscope output without deskew or deconvolution applied (Raw_01-07-2016_TimeLapse4_DMSO_21hrs_Calcein_FM464). Four confocal datasets from the cytoskeletal remodeling experiments are also included, phalloidin stained images, control (Phalloidin PMC DMSO 5 zoom4s) and VEGFR inhibited (Phalloidin PMC Axt 18 zoom4); and myosinIIP stained images, control (Myosin PMC 30h DMSO new slid 4a zoom4) and VEGFR inhibited (Phalloidin PMC Axt 18 zoom4). Source code and instructions for the analysis tools used for both the lattice light-sheet and confocal data is available at: https://git-bioimage.coe.drexel.edu/opensource/llsm-calcium-vesicles-lever Code for the deconvolution and deskew algorithms is available from the Janelia research center at: https://www.janelia.org/open-science/lattice-light-deconvolution-software-cudadeconv
DOI: 10.5281/zenodo.4382711
title: Supplementary data for calcium-vesicles perform active diffusion in the sea urchin embryo during larval biomineralization

description: <strong>Supplementary datasets for the paper Calcium-vesicles perform active diffusion in the sea urchin embryo during larval biomineralization.</strong> Two deskewed and deconvolved lattice light-sheet datasets (100 frames each) from the live-cell experiments are available, a control embryo dataset (01-07-2016_TimeLapse4_DMSO_21hrs_Calcein_FM464) and a VEGFR inhibited dataset (24-06-2016_Timelapse1_Axtinib_150_19hrs_Calcein_FM464). These datasets were used for collecting size and motion statistics. The control embryo dataset is available in raw microscope output without deskew or deconvolution applied (Raw_01-07-2016_TimeLapse4_DMSO_21hrs_Calcein_FM464). Four confocal datasets from the cytoskeletal remodeling experiments are also included, phalloidin stained images, control (Phalloidin PMC DMSO 5 zoom4s) and VEGFR inhibited (Phalloidin PMC Axt 18 zoom4); and myosinIIP stained images, control (Myosin PMC 30h DMSO new slid 4a zoom4) and VEGFR inhibited (Phalloidin PMC Axt 18 zoom4). Source code and instructions for the analysis tools used for both the lattice light-sheet and confocal data is available at: https://git-bioimage.coe.drexel.edu/opensource/llsm-calcium-vesicles-lever Code for the deconvolution and deskew algorithms is available from the Janelia research center at: https://www.janelia.org/open-science/lattice-light-deconvolution-software-cudadeconv
DOI: 10.6084/m9.figshare.13536758
title: Field data

description: Field data for fish guidance with bubble barrier<br>
DOI: 10.6084/m9.figshare.13536758.v1
title: Field data

description: Field data for fish guidance with bubble barrier<br>
DOI: 10.6084/m9.figshare.13536740.v1
title: Lab data

description: Lab data for fish guidance with bubbles and strobe light<br>
DOI: 10.6084/m9.figshare.13536740
title: Lab data

description: Lab data for fish guidance with bubbles and strobe light<br>
DOI: 10.6084/m9.figshare.13536623
title: GEVaP dataset.xlsx

description: Primary dataset for the evaluation of the Ghana Early Vaccination Program ( GEVaP) cluster randomized controlled trial. Manuscript: Mobile Nudges and Financial Incentives to Improve Coverage of Timely Neonatal Vaccination in Rural Areas (GEVaP trial): A 3-armed Cluster Randomized Controlled Trial in Northern Ghana.
DOI: 10.6084/m9.figshare.13079489.v1
title: MargazoglouEtAl_2020.zip

description: We present here the majority of the dataset used for the figures of the paper "Multistability of the Earth's Climate as a Problem of Stochastic Dynamics and of Data Science". Some datafiles are sufficient to reproduce directly the figures, while others are the raw data one needs to reproduce the figures using the methodologies described in the paper.<br><br>For more information, please contact Georgios Margazoglou at g.margazoglou@reading.ac.uk or Valerio Lucarini at v.lucarini@reading.ac.uk. Thank you!<br><br>