cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12681983.v2
title: Multi-relational real world manufacturing process data (FCUP, CMF)

description: The dataset comes from a real world manufacturing process of a Critical Manufacturing business partner. The manufacturing process is monitored via a IoT system. The dataset has been carefully anonymized due to privacy concerns, for more details on how this process was conducted see the accompanying thesis.<br>In the case of the process that generates this data eight different readings are taken each time a particular tool is used. Eventually once a tool begins underperforming, it is retired and therefore does not again again appear in the dataset. We believe that this dataset may be used to estimate and predict tool longevity, as it likely presents time dependent covariates as such be of use to the research of multilevel survival analysis or predictive maintenance models.<br><br><br>Name |Type |Description--------------------------|---------------------|---------OperationEndTime |Numerical |Difference in seconds from the first operation in the dataset.ToolId |Numerical Key |The tool used. It’s value is unique to each different tool in the dataset.Machine |Numeric |A categorical variable, representing the machine that used the tool. It’s value is unique to each different machine in the dataset.Process |Numeric |A categorical variable, representing the process that used the tool. It’s value is unique to each different process in the dataset.P1DataPoint1 |Numeric |A concrete value for a reading of parameter one.P1DataPoint2 |Numeric |A concrete value for an error metric associated with the process that generated the value present on P1DataPoint1.P2DataPoint1 |Numeric |A concrete value for a reading of parameter two.P2DataPoint2 |Numeric |A concrete value for an error metric associated with the process that generated the value present on P1DataPoint2.... |... |...P8DataPoint1 |Numeric |A concrete value for a reading of parameter eight.P8DataPoint2 |Numeric |A concrete value for an error metric associated with the process that generated the value present on P1DataPoint8.
DOI: 10.6084/m9.figshare.25399735.v1
title: WH180 Weather Station measurements at Nova Esperanca in Manaus, Amazonas - Brazil 2018-2019

description: Data generated from a small weather station, model WH180 at the indigenous community Nova Esperança, placed at the sustainable development area of Puranga Conquista, rural area of Manaus, Amazonas State in Brazil. Coordinates 2°44'50.7"S 60°25'50.8"WData range from 2018 to 2019.It is part of the data used to monitor a solar photovoltaic system. More details of the project at:Trindade, Alessandro, Nandor Verba, Nei Farias, Diego Ramon, Kojo Gyamfi, Helder da Silva, and Virgilio Viana. (2022). "Impact Evaluation of Solar Photovoltaic Electrification: Indigenous Community Case Study in Brazilian Amazon" Environmental Sciences Proceedings 15, no. 1: 16. https://doi.org/10.3390/environsciproc2022015016<br><br>
DOI: 10.6084/m9.figshare.27938034.v2
title: Fundus-AVSeg：用于基于 AI 的动脉静脉分割的眼底图像数据集

description: 抽象视网膜动脉静脉血管与全身性慢性疾病和心血管疾病有关。因此，视网膜动脉静脉血管的准确定量分析是临床诊断的初步依据。大多数现有的人工智能 （AI） 方法都是数据驱动的。虽然已经发布了一些公共视网膜动脉静脉分割数据集，但其数据质量并不令人满意。在本文中，我们为基于 AI 的动脉静脉分割建立了一个新的眼底图像数据集 Fundus-AVSeg。它由 100 张高分辨率眼底图像组成，并由专业眼科医生进行像素级手动注释。我们相信我们的 Fundus-AVSeg 将有利于视网膜动脉-静脉血管分割的进一步发展。<br>数据信息Fundus-AVSeg 包含 100 张眼底图像，其中 40 张来自正常眼底，20 张来自糖尿病视网膜病变 （DR） 患者，20 张来自年龄相关性黄斑变性 （AMD），20 张来自青光眼。图像有两种分辨率：2656×1992 和 1280×1280。像素级手动注释类别包括动脉、静脉、动脉-静脉交叉和类别不确定的血管。还为每张图像提供了两个图像质量类别：低质量和高质量。数据采集Fundus-AVSeg 的数据来源是深圳眼科医院。所有 100 张眼底图像均来自深圳市眼科医院的影像数据库。眼底图像由眼科医生使用蔡司VISUCAM200眼底相机或佳能眼底相机拍摄，这些都是眼底相机的主流产品。所有眼底图像都是在真实的临床诊断过程中生成的。所有伦理和实验程序和协议均由深圳眼科医院根据道德编号 2022KYPJ062 授予。数据记录Fundus-AVSeg 数据集已以压缩文件的形式上传到 Figshare。解压后的文件包含两个文件夹和一个Microsoft Office Excel 列表，以及两个 txt 格式的文件，分别命名为 ''images''、''annotation'' 、''metadata.xlsx''、'training.txt'' 和 ''testing.txt'' 。在 ''images'' 文件夹中，有 100 张眼底图像。图像被命名为 ''n\_D/A/G/N.png“，其中 ''n'' 表示眼底图像的数量，''D''、''A''、'G'' 和 ''N'' 代表 ''DR''、'AMD''、'青光眼'' 和 ''正常''。''annotation'' 文件夹包含 100 张对应的带注释的图像，这些图像按照相同的规则命名，其中该文件夹中的特定图像是 ''images'' 中同名图像的基本事实。“metadata.xlsx”是一个 Excel 文件，其中包含以下信息：图像名称、眼睛 ID、疾病类型和图像质量。''training.txt'' 和 ''testing.txt'' 文件分别存储用于训练和测试的特定图像名称，按照数据集的 8：2 分割。请注意，当前的数据拆分策略是我们推荐的，可以根据不同的研究目的进行更改。使用说明完整的数据集可通过提供的链接下载。用户可以根据其特定的研究设计灵活地划分数据集。预计用户将在他们的研究中引用这篇论文，并认识到数据集对他们研究的贡献。代码可用性本研究中提到的代码可以在 https://github.com/AI-thpremed/Basic-Seg-Experiment 中找到。<br><br>
DOI: 10.6084/m9.figshare.5128174.v1
title: Supplementary Material for: AGO Recommendations for the Diagnosis and Treatment of Patients with Advanced and Metastatic Breast Cancer: Update 2015

description: Medicine
DOI: 10.17608/k6.auckland.4223904.v1
title: Lightspeed Customer Journey Mapping

description: A lightweight set of tools and a process to capture customer experience, and map service processes from a customer centric point of view.
DOI: 10.17632/nnd7pmdyps
title: Data for: Kinetic, physicochemical properties and effects of pesticides and heavy metals on brain acetylcholinesterase of bentonic fish Hoplosternum littorale: Perspectives of application in aquatic biomonitoring

description: Highlights 1. Brain ChE from H. littorale was physicochemical and kinetically characterized; 2. Selective inhibitors showed AChE as the main ChE in H. littorale brain; 3. The enzyme was in vitro exposed to eleven pesticides and ten ions; 4. This study presents the first report on the inhibition of cerebral AChE in the Siluriformes group of fish by the pesticides, novaluron and pyriproxyfen; 5. The AChE from H. littorale was highly sensitive to dichlorvos at concentrations (IC20 - IC50) well below the maximum concentrations of this pesticide allowed by the current legislation; 6. Among the ions studied, mercury altered the enzymatic activity most significantly.
DOI: 10.6084/m9.figshare.24739365.v1
title: Raw Uncropped Western Blots

description: Western blot data
DOI: 10.6084/m9.figshare.4556530.v1
title: Resting-state fMRI data of patients who first diagnosed as major depression and healthy controls

description: This dataset consists of anatomical data and resting-state fMRI data of 3 groups of subjects: 1)the BP group: including 14 patients who were first diagnosed as major depression but later experienced at least 1 mania/hypomania episode during 5 years of follow-up period; 2)the MD group: including 14 patients who were first diagnosed as major depression but have never experienced any mania/hypomania episodes during 5 years of follow-up period; 3)the CN group: including 14 healthy controls who have never experienced any depressive or mania/hypomania episodes during 5 years of follow-up period.
DOI: 10.6084/m9.figshare.15634860.v1
title: Supplementary Material for: Prognostic Implication of Diagnostic Confidence Level in Patients with Fibrotic Hypersensitivity Pneumonitis

description: <b><i>Background:</i></b> Hypersensitivity pneumonitis (HP) has various clinical courses and outcomes, but the prognostic factors are not well-defined. Vasakova et al. [Am J Respir Crit Care Med. 2017 Sep;196(6):680–9] have proposed a diagnostic algorithm that categorized suspected patients according to the level of confidence in the diagnosis. This study aimed to investigate whether the confidence level of clinical diagnosis has prognostic implication in patients with fibrotic HP. <b><i>Methods:</i></b> This study included 101 biopsy-proven fibrotic HP patients diagnosed between 2002 and 2017. The patients were retrospectively classified into confident, probable, possible, and unlikely chronic HP, according to the confidence level in the diagnostic criteria/algorithm. The survival and forced vital capacity (FVC) changes were compared between the groups. Risk factors for mortality were analysed using a Cox proportional hazard model. <b><i>Results:</i></b> The median follow-up duration was 67.6 months. The mean age was 60.4 years, and percentages of women were 60.4%. When classified based on the diagnostic criteria/algorithm, possible HP was the most common (51.5%), followed by probable (26.7%), confident (9.9%), and unlikely HP (6.9%). Distinctive survival curves were found according to the diagnostic confidence level, showing the worst outcome in unlikely chronic HP (median survival, 30.2 months). In a multivariable Cox analysis, unlikely HP was a significant predictor of poor survival (hazard ratio, 4.652; 95% confidence interval, 1.231–17.586; <i>p</i> = 0.023), after adjustment for age, body mass index, FVC, and diffusing capacity. <b><i>Conclusions:</i></b> The diagnostic confidence level may predict clinical outcomes in patients with HP. Unlikely HP was shown to have a significantly poorer survival than other diagnostic confidence levels.
DOI: 10.6084/m9.figshare.22285429.v1
title: NT1 genome assembly

description: NT1 <em>Arabidopsis lyrata </em>genome assembly
DOI: 10.6084/m9.figshare.28347134.v1
title: Orange County Animal Care (California) shelter Intakes & Outcomes 20180101-20241020

description: The file contains animal-level intakes and outcomes from Orange County (California) Animal Care, which is the county animal shelter. Animals with intakes in the period January 1, 2018 to October 20, 2024 are included. The file was obtained from the county via a requested under the California Public Records Act. The Excel (.xlsx) file is the original provided by the county. This was then converted to the Open Document Spreadsheet (.ods) file using LibreOffice.
DOI: 10.6084/m9.figshare.3082027.v1
title: C-Terminome Web App MySQL Database Dump

description: Production MySQL database dump for the Schiller Lab C-Terminome Web Application.Web App Page: http://cterminome.bio-toolkit.com/Project Home Page: http://bio-toolkit.com/C-terminome/project/<br>
DOI: 10.6084/m9.figshare.4535360.v2
title: Evaluation of hemoglobin A1c measurement from filter paper using high-performance liquid chromatography and immunoturbidimetric assay

description: Evaluation ofhemoglobin A 1c measurementfrom filterpaperusing high-performanceliquidchromatographyand<br>immunoturbidimetricassay
DOI: 10.6084/m9.figshare.14987388.v1
title: OKCupid Datasets

description: This is a public dataset called OKCupid, collected by Kirkegaard and Bjerrekaer. The dataset is composed of 68,371 records and 2,626 variables. It is shared for educational purposes. Formatted in Arrow Parquet.<br>Description from the authors:<br><br>"A very large dataset (N=68,371, 2,620 variables) from the dating site OKCupid is presented and made publicly available for use by others. As an example of the analyses one can do with the dataset, a cognitive ability test is constructed from 14 suitable items. To validate the dataset and the test, the relationship of cognitive ability to religious beliefs and political interest/participation is examined. Cognitive ability is found to be negatively related to all measures of religious belief (latent correlations -.26 to -.35), and found to be positively related to all measures of political interest and participation (latent correlations .19 to .32). To further validate the dataset, we examined the relationship between Zodiac sign and every other variable. We found very scant evidence of any influence (the distribution of p-values from chi square tests was flat). Limitations of the dataset are discussed."
DOI: 10.6084/m9.figshare.25672236.v1
title: Database for Copper isotopes track the Neoproterozoic oxidation of cratonic mantle roots

description: This database belongs to the paper "Copper isotopes track the Neoproterozoic oxidation of cratonic mantle roots", and includes Supplementary Table S1, Supplementary Data 1, Supplementary Data 2, Supplementary Data 3, and Supplementary Data 4.
DOI: 10.17632/r6xcggwvjp
title: OWL2ASP tool

description: OWL2ASP stands for Ontology Web Language to Answering Set Programming. This Java tool permits translating an OWL 2 ontology to ASP format. The output of that translation is used by the WASP solver to obtain the justifications (MUSes) of a specific consequence

WASP solver  link http://alviano.github.io/wasp/
DOI: 10.6084/m9.figshare.11770938.v8
title: Supplementary materials: Ontogeny of an interactive call-and-response system in Spix’s disc-winged bats. PART 2

description: Part 2 of supplementary materials of the paper "Ontogeny of an interactive call-and-response system in Spix’s disc-winged bats". The data contains raw acoustic data, individual's metadata and outputs of model selection procedures and model parameter estimations.
DOI: 10.6084/m9.figshare.16903141.v1
title: Supplementary Material for: The Role of Ultrasonography in the Diagnosis and Decision Algorithm for the Management of Pneumothorax after Transbronchial Lung Cryobiopsy

description: <b><i>Background:</i></b> Pneumothorax is one of the main complications of transbronchial lung cryobiopsy (TBLC). Chest ultrasound (CUS) is a radiation-free alternative method for pneumothorax detection. <b><i>Objective:</i></b> We tested CUS diagnostic accuracy for pneumothorax and assessed its role in the decision algorithm for pneumothorax management. Secondary objectives were to evaluate the post-procedure pneumothorax occurrence and risk factors. <b><i>Methods:</i></b> Eligible patients underwent TBLC, followed by chest X-ray (CXR) evaluation 2 h after the procedure, as our standard protocol. Bedside CUS was performed within 30 min and 2 h after TBLC. Pneumothorax by CUS was defined by the absence of lung sliding and comet-tail artefacts and confirmed with the stratosphere sign on M-mode. Pneumothorax size was determined through lung point projection on CUS and interpleural distance on CXR and properly managed according to clinical status. <b><i>Results:</i></b> Sixty-seven patients were included. Nineteen pneumothoraces were detected at 2 h after the procedure, of which 8 (42.1%) were already present at the first CUS evaluation. All CXR-detected pneumothoraces had a positive CUS detection. There were 3 discordant cases (κ = 0.88, 95% CI: 0.76–1.00, <i>p</i> &lt; 0.001), which were detected by CUS but not by inspiration CXR. We calculated a specificity of 97.5% (95% CI: 86.8–99.9) and a sensitivity of 100% (95% CI: 87.2–100) for CUS. Pneumothorax rate was higher when biopsies were taken in 2 lobes and if histology had pleural representation. Final diagnosis was achieved in 79.1% of patients, with the most frequent diagnosis being hypersensitivity pneumonitis. Regarding patients with large-volume pneumothorax needing drainage, the rate of detection was similar between CUS and CRX. <b><i>Conclusion:</i></b> CUS can replace CXR in detecting the presence of pneumothorax after TBLC, and the lung point site can reliably indicate its size. This useful method optimizes time spent at the bronchology unit and allows immediate response in symptomatic patients, helping to choose optimal treatment strategies, while preventing ionizing radiation exposure.
DOI: 10.6084/m9.figshare.28683719.v1
title: Publications-SLR.pdf

description: List of papers covered by:<br><br>Regression Testing via Traceability: A SystematicLiterature Review
DOI: 10.6084/m9.figshare.5122693.v1
title: Supplementary Material for: The Use of S100B and Tau Protein Concentrations in the Cerebrospinal Fluid for the Differential Diagnosis of Bacterial Meningitis: A Retrospective Analysis

description: <i>Background:</i> Patients with meningitis are often difficult to classify into bacterial (BM) or benign viral (VM) meningitis. To facilitate the differential diagnosis, S100B and Tau protein in the cerebrospinal fluid (CSF) were measured and compared with standard laboratory parameters. <i>Methods:</i> S100B<sub>CSF</sub>, Tau<sub>CSF</sub>, and routine parameters (CSF leukocyte count, protein<sub>CSF</sub>, lactate<sub>CSF</sub>, serum C-reactive protein, blood leukocyte count and body temperature) were analyzed in 33 patients with microbiologically confirmed BM and in 19 with VM. Their classification accuracy, sensitivity and specificity were studied by receiver operating characteristic (ROC) curves. <i>Results:</i> S100B<sub>CSF</sub> concentrations were higher in BM than in VM patients (p = 0.03) and showed a promising accuracy (90%) for the differential diagnosis of BM versus VM. Its discriminative properties were comparable to routine parameters. Of all parameters, S100B<sub>CSF</sub> showed the highest specificity (100%) with an optimal cut-off of 3.1 ng/ml. Tau<sub>CSF</sub> concentrations were useless for the discrimination (p = 0.64). <i>Conclusions:</i> In contrast to Tau<sub>CSF</sub>, S100B<sub>CSF</sub> concentrations ≧3.1 ng/ml are promising to discriminate bacterial from viral meningitis.
DOI: 10.6084/m9.figshare.17702045.v1
title: Temporal single cell and bulk RNA sequencing data of adult mouse spinal cord after injury

description: For single cell RNA sequencing dataset, the 10× Genomics platform was used to perform massive single cell mRNA profiling from mouse spinal cord samples collected at 6 different time points after Spinal Cord Injury (crush injury), i.e., 4h, 1d, 3d, 7d, 14d, and 38d post injury. Uninjured spinal cord samples are included as well. Both male and female C57BL/6 mice were used in the analyses, 10mm-long spinal cord segments encompassing the lesion site were dissociated into single cells through our proprietary method developed based on published studies<sup>1,2</sup>. For non-injury controls, male and female spinal cord samples were sequenced separately, and male and female scRNA-seq data overlapped rather well. For bulk RNA sequencing, 1 cm long spinal cord segments centered on leison core, average of 20 mg, at 15min, 1d, 3d, 7d, 14d, 28d, 42d after injury, were homogenized in 1 ml TRIzol (Invitrogen), and mRNA was extracted and purified by RNeasy Mini Kit (QIAGEN) according to the manufacturer’s instructions. The qualities of RNA were determined by Agilent 2100. 1-3 μg qualified RNA were subjected to Illumina V2 RNAseq library construction, followed by Hiseq2000 SE50bp Sequencing.
DOI: 10.17632/3xwzkwf9g7
title: Serum metabolic signature differentiates neonatal sepsis from controls and resolves upon recovery.

description: Sepsis, a life-threatening disorder with multi-organ dysfunction, is a leading cause of neonatal mortality. Current microbiology-based sepsis diagnosis is time-consuming, and identification of deregulated host serum metabolite signatures might be useful to develop early screening tools and host-directed therapeutics. In this multi-institutional study, 500 neonates (41%, female) were classified to culture-positive (CP) or negative sepsis (CN) cases and controls (no sepsis: NS, healthy control: HC) based on their microbial culture and mass spectrometry test results. The neonates were randomly grouped into two discovery sets (I:n=71; II:n=269), a validation set (n=60), and a longitudinally followed-up population (n=100). Serum samples of these neonates were processed and profiled using gas chromatography coupled to either quadrupole or time-of-flight mass spectrometry (GC-MS/-TOF-MS). Deregulated (log2¬case/control ≥±0.58, p&lt;0.05) serum metabolites in sepsis cases were identified from the discovery sets and their predictive accuracy in the validation set was calculated using area under the receiving operator characteristic curve (AUC of ROC). The abundance of these deregulated metabolites was monitored in the longitudinally followed-up neonates (CP:n=29, CN:n=35, and NS:n=36) completing therapeutic intervention. Most of the CP cases were Klebsiella pneumoniae (28.6%) or Acinetobacter baumannii (20.6%) positive. Gestational age (CP: 30.9±1.9 weeks, CN: 30.9±1.8 weeks, HC: 32.3±1.3 weeks, NS: 31.6±1.5 weeks) and birthweight (CP: 1.4±0.3 kg, CN: 1.4±0.4 kg, HC: 1.7±0.3 kg, NS: 1.6±0.3 kg) were lower in sepsis neonates compared to controls. Out of 57 identified serum metabolites, a set of six (1,5-Anhydro-D-sorbitol-Lactic-acid-Malic-acid-Myo-inositol-Phenylalanine-Lysine) were identified as sepsis biosignature. The AUC of ROC of the biosignature to predict CP or CN from HC was 0.97 and from NS was 0.84 and 0.64, respectively. Myo-inositol, malic acid, and 1,5-anhydro-D-sorbitol revert to the HC levels in neonates completing therapeutic intervention. A serum metabolite signature showed a &gt;97% predictive accuracy for sepsis and could further be explored for its diagnostic potential and host-directed therapeutics development.
DOI: 10.6084/m9.figshare.21064636.v5
title: Coding Information of "How Social Network Analysis Informs Translation Studies: A Systematic Review".xlsx

description: This is the coding database of the study "How Social Network Analysis Informs Translation Studies: A Systematic Review." The information coded in the table included research context, data collection method, data analysis, network typology, node type, network size, visualization, network concepts adopted, theoretical perspective combined, methodology combined, study purpose, and findings.
DOI: 10.6084/m9.figshare.21090994.v2
title: Combined barley trials data with monthly climate data for early 20th-century Ireland

description: This early 20<sup>th</sup>-century barley trials dataset was first published by Student (1923) and consists of two barley varieties, <em>Archer </em>and <em>Goldthorpe</em>, grown from 1901-1906 across Ireland at 18 farms in total. Here we have updated the yield and price units to their modern day equivalents of tonnes per ha and (GBP) £ per ha. Latitude and longitude values are approximated from the "Place" and "District" given. Using the estimated latitude and longitude values from each farm, the nearest weather station with temperature and rainfall data available for the period 1901-1906 was identified. Recently digitised and released daily weather data from these stations was then used to estimate monthly total rainfall (mm), monthly maximum daily rainfall (mm), mean monthly maximum temperature (<sup>o</sup>C), mean monthly mean temperature (<sup>o</sup>C) and mean monthly minimum temperature (<sup>o</sup>C) at each farm.
DOI: 10.6084/m9.figshare.24588711.v1
title: Aggregated Data for Blockchain Subsystems

description: The data contain daily or monthly counts per entity across blockchain subsystems.