cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1140801.10fu
title: SH1140801.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1140803.10fu
title: SH1140803.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.c.3611231_d1.v1
title: Additional file 1: Table S1. of Identification of replication-dependent and replication-independent linker histone complexes: Tpr specifically promotes replication-dependent linker histone stability

description: Protein identification report for H1 variant associating proteins. The number of unique peptides determined by mass spectrometry are given for each protein. Mock purification sample from U2OS Tet/On cells without H1 vector insert was used as negative control. Two technical replicates were analyzed for each H1 variant sample. Four technical replicates were analyzed for the negative control. (XLSX 67 kb)
DOI: 10.15468/dl.uxaqqm
title: Occurrence Download

description: A dataset containing 827276 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "GadmGid is USA.47_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 827276 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037765-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3607304_d1.v1
title: Additional file 4: Figure S4. of Inhibition of Oct 3/4 mitigates the cardiac progenitor-derived myocardial repair in infarcted myocardium

description: Showing apoptotic signals from CSC-engrafted myocardium. A Representative immunostaining images of apoptosis in post-MI myocardium. Cardiomyocytes that underwent apoptosis were identified by active caspase-3 (green). CSC-derived cardiomyocytes were stained with GFP (red). DAPI was used to visualize nuclei. Scale bar: 50 μm. B GFP-positive apoptotic cells in MI heart that received CSC engraftment. The unit was normalized to the cell number per mm2. The primary antibodies that were used in this study include the following: engrafted CSCs were identified with mouse monoclonal GFP (Clontech, Mountain View, CA, USA) and costained with polyclonal active caspase 3 (1:100; Abcam, Cambridge, MA, USA). The methodology for immunostaining is identical to the described description in Materials and methods. Value represent mean ± SE (n = 3 hearts per group). (ZIP 271 kb)
DOI: 10.6084/m9.figshare.c.3607289_d3.v1
title: Additional file 2: of Biomechanical response of lumbar facet joints under follower preload: a finite element study

description: RawÂ data of prediected facet forces/contact areas in different postures. (XLSX 37Â kb)
DOI: 10.6084/m9.figshare.c.3607289_d2.v1
title: Additional file 3: of Biomechanical response of lumbar facet joints under follower preload: a finite element study

description: RawÂ data of prediected mean contact pressuresÂ in different postures. (XLSX 26Â kb)
DOI: 10.6084/m9.figshare.c.3607289_d1.v1
title: Additional file 1: of Biomechanical response of lumbar facet joints under follower preload: a finite element study

description: RawÂ data of validation for the lumbar spine model. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3607229_d1.v1
title: Additional file 1: of Genomic resources for a unique, low-virulence Babesia taxon from China

description: KEGG pathways for Babesia sp. Xinjiang. (XLSX 38Â kb)
DOI: 10.6084/m9.figshare.c.3602660_d15.v1
title: Additional file 10: Table S6. of A multi-omic analysis of human naĂŻve CD4+ T cells

description: A list of genes displaying allele specific expression. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3602660_d13.v1
title: Additional file 4: Table S1. of A multi-omic analysis of human naĂŻve CD4+ T cells

description: A list of genes expressed in naĂŻve CD4+ T cells. (XLSX 403 kb)
DOI: 10.6084/m9.figshare.c.3602660_d12.v1
title: Additional file 21: Table S10. of A multi-omic analysis of human naĂŻve CD4+ T cells

description: A list of regulatory methylation sites derived from TCGA data. (XLSX 418 kb)
DOI: 10.6084/m9.figshare.c.3602714_d4.v1
title: Additional file 3: of High-resolution QTL mapping for grain appearance traits and co-localization of chalkiness-associated differentially expressed candidate genes in rice

description: Table S5. Annotated function of differentially expressed genes identified between RIL segregant pools. (XLSX 170 kb)
DOI: 10.6084/m9.figshare.c.3602660_d11.v1
title: Additional file 13: Table S7. of A multi-omic analysis of human naĂŻve CD4+ T cells

description: A list of peptides supporting novel exons or exon extensions identified using proteogenomics strategy. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3602714_d3.v1
title: Additional file 2: of High-resolution QTL mapping for grain appearance traits and co-localization of chalkiness-associated differentially expressed candidate genes in rice

description: Table S4. Annotated function of differentially expressed genes identified between parents. (XLSX 1232 kb)
DOI: 10.6084/m9.figshare.c.3602660_d8.v1
title: Additional file 22: Table S11. of A multi-omic analysis of human naĂŻve CD4+ T cells

description: Pathways enriched from Gene Set Analysis of genes correlating with TCGA dataset 1 or dataset 2. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3602660_d6.v1
title: Additional file 15:Table S9. of A multi-omic analysis of human naĂŻve CD4+ T cells

description: A list of annotated pseudogenes that encode proteins in naĂŻve CD4+ T cells with the corresponding peptide evidence from proteomics data. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3602654_d6.v1
title: Additional file 5: Table S4. of Genome-wide analysis of the TPX2 family proteins in Eucalyptus grandis

description: The Ka/Ks ratios and Evolutionary selection of paralogous TPX2 family proteins. Ks: number of synonymous substitutions per synonymous site; Ka: number of nonsynonymous substitutions per nonsynonymous site. When Ka/Ks = 1, neutral evolution; Ka/Ks  1, diversifying selection. Genes in duplicated pairs are in tandem duplication (Tandem), in homeologous chromosomes (Homeologous) or were simply paralogous. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3598475_d1.v1
title: Additional file 1: of Drug resistance characteristics and cluster analysis of M. tuberculosis in Chinese patients with multiple episodes of anti-tuberculosis treatment

description: MIRU-VNTR data of the Beijing family Mtb strain. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3598472_d1.v1
title: Additional file 2: Table S1. of Genome-wide identification and characterisation of HOT regions in the human genome

description: H1hESC TFBS Clusters info. Table S2. Comparison of motifless binding peaks and HOT regions. Table S3. Information of HOT regions in 154 files. Table S4. Key TF genes. Table S5. Developmental TF genes. Table S6. Repetitive elements in HOT regions. Table S7. 1046 Validated elements in HOT regions. Table S8. gene list of associated “gained” HOT regions. Table S9. Enriched TF gene list. Table S10. Enrichment of bivalent genes in HOT regions. Table S11 GO analysis of activated HOT regions in H1-derived cells. (XLSX 766 kb)
DOI: 10.6084/m9.figshare.c.3598430_d4.v1
title: MOESM3 of Comparative analysis of the secretomes of Schizophyllum commune and other wood-decay basidiomycetes during solid-state fermentation reveals its unique lignocellulose-degrading enzyme system

description: Additional file 3: Table S2. Identified proteins in the secretomes of four fungi during SSF on Jerusalem artichoke stalk.
DOI: 10.6084/m9.figshare.c.3598445_d2.v1
title: Additional file 1: Table S1a. of Modelling the consequences of a reduction in alcohol consumption among patients with alcohol dependence based on real-life observational data

description: Deterministic sensitivity analysis (risk parameters) - Confidence intervals of number of events per 100,000 patient-years by HDD category. Table S1b. Deterministic sensitivity analysis (risk parameters) - Confidence intervals of number of events per 100,000 patient-years by TAC category. (ZIP 30 kb)
DOI: 10.6084/m9.figshare.c.3598445_d1.v1
title: Additional file 2: Table S2a. of Modelling the consequences of a reduction in alcohol consumption among patients with alcohol dependence based on real-life observational data

description: Probabilisitic sensitivity analysis (alcohol consumption simulation coefficients) - Confidence intervals of number of events per 100,000 patient-years by HDD category. Table S2b. Probabilisitic sensitivity analysis (alcohol consumption simulation coefficients) - Confidence intervals of number of events per 100,000 patient-years by TAC category. (ZIP 30 kb)
DOI: 10.6084/m9.figshare.c.3598391_d8.v1
title: Additional file 6: of Transcriptomic and phytochemical analysis of the biosynthesis of characteristic constituents in tea (Camellia sinensis) compared with oil tea (Camellia oleifera)

description: Estimated Ka and Ks values of 625 orthologous gene pairs (Ka/Ksâ  &gt;â  1). The sequence length, nonsynonymous substitution rate (Ka), synonymous substitution rate (Ks), Ka/Ks and P-value are shown. (XLSX 51Â kb)
DOI: 10.6084/m9.figshare.c.3596402_d15.v1
title: Additional file 4: Table S2. of The Rat microRNA body atlas; Evaluation of the microRNA content of rat organs through deep sequencing and characterization of pancreas enriched miRNAs as biomarkers of pancreatic toxicity in the rat and dog

description: Tissue specific and enriched miRNAs identified by Lilly. Tissue specific and tissue enriched miRNAs identified by Eli Lilly are listed under the organ in which they are most abundantly expressed. Tissue specific miRNAs are in bold text and tissue enriched miRNAs are in non-bold text. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3596468_d2.v1
title: Additional file 2: Table S2. of Emodin enhances cisplatin-induced cytotoxicity in human bladder cancer cells through ROS elevation and MRP1 downregulation

description: Primer pairs. (XLS 10 kb)
DOI: 10.6084/m9.figshare.c.3596441_d11.v1
title: Additional file 9: of Transcriptomic analysis of a moderately growing subisolate Botryococcus braunii 779 (Chlorophyta) in response to nitrogen deprivation

description: Table S14. List of B. braunii 779 enzymes involved in botryococcene or squalene biosynthesis based on the curated transcriptome of B. braunii Showa.
DOI: 10.6084/m9.figshare.c.3596468_d1.v1
title: Additional file 1: Table S1. of Emodin enhances cisplatin-induced cytotoxicity in human bladder cancer cells through ROS elevation and MRP1 downregulation

description: Antibodies used in this study. (XLS 7 kb)
DOI: 10.6084/m9.figshare.c.3596441_d10.v1
title: Additional file 7: of Transcriptomic analysis of a moderately growing subisolate Botryococcus braunii 779 (Chlorophyta) in response to nitrogen deprivation

description: Table S12. List of the differentially transcribed ESTs.
DOI: 10.6084/m9.figshare.c.3596441_d9.v1
title: Additional file 6: of Transcriptomic analysis of a moderately growing subisolate Botryococcus braunii 779 (Chlorophyta) in response to nitrogen deprivation

description: Tables S8â  11. List of homologous ESTs between B. braunii Showa and other trains.
DOI: 10.6084/m9.figshare.c.3596441_d8.v1
title: Additional file 8: of Transcriptomic analysis of a moderately growing subisolate Botryococcus braunii 779 (Chlorophyta) in response to nitrogen deprivation

description: Table S13. List of B. braunii 779 enzymes involved in VLCFA biosynthesis based on the transcriptome of B. braunii Bot-88.
DOI: 10.6084/m9.figshare.c.3596402_d13.v1
title: Additional file 3: Table S1. of The Rat microRNA body atlas; Evaluation of the microRNA content of rat organs through deep sequencing and characterization of pancreas enriched miRNAs as biomarkers of pancreatic toxicity in the rat and dog

description: List of miRNAs in common in HESI analysis. Tissue enriched miRNAs mutually identified by independent data analysis techniques employed by Eli Lilly, NIEHS and Maastricht University are listed including tissue (s) in which the miRNA is most abundantly expressed. Sequences of miRNAs and Exiqon qPCR assay identification. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3596402_d12.v1
title: Additional file 9: Table S6. of The Rat microRNA body atlas; Evaluation of the microRNA content of rat organs through deep sequencing and characterization of pancreas enriched miRNAs as biomarkers of pancreatic toxicity in the rat and dog

description: Correlations of miRNAs to sequencing data. Correlation of tissue enriched miRNA measurements using deep sequencing and qPCR are depicted with a correlation of â  1.0 being highly correlated and â  0.0 representing poor correlation. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3596441_d7.v1
title: Additional file 1: of Transcriptomic analysis of a moderately growing subisolate Botryococcus braunii 779 (Chlorophyta) in response to nitrogen deprivation

description: Table S1. List of the 12041 annotated ESTs in B. braunii 779.
DOI: 10.6084/m9.figshare.c.3596441_d5.v1
title: Additional file 2: of Transcriptomic analysis of a moderately growing subisolate Botryococcus braunii 779 (Chlorophyta) in response to nitrogen deprivation

description: Table S2. List of GO terms and number of ESTs associated.
DOI: 10.6084/m9.figshare.c.3596441_d4.v1
title: Additional file 4: of Transcriptomic analysis of a moderately growing subisolate Botryococcus braunii 779 (Chlorophyta) in response to nitrogen deprivation

description: Table S3. List of KEGG pathways and number of ESTs associated.
DOI: 10.6084/m9.figshare.c.3596441_d1.v1
title: Additional file 10: of Transcriptomic analysis of a moderately growing subisolate Botryococcus braunii 779 (Chlorophyta) in response to nitrogen deprivation

description: Table S15. List of B. braunii 779 enzymes involved in botryococcene or squalene biosynthesis based on the machine-assembled transcriptome of B. braunii Showa.
DOI: 10.6084/m9.figshare.c.3596402_d8.v1
title: Additional file 8: Table S5. of The Rat microRNA body atlas; Evaluation of the microRNA content of rat organs through deep sequencing and characterization of pancreas enriched miRNAs as biomarkers of pancreatic toxicity in the rat and dog

description: MiRNAs tested in qPCR validation. Tissue enriched miRNAs and their sequences are displayed. MiRNA abundance was measured through qPCR in order to correlate their tissue enrichment status to deep sequencing results. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.28045403.v1
title: Raw data.xlsx

description: <b>Uncovering the therapeutic potentials of marine-derived natural compounds with small amounts for neurological disorders</b>
DOI: 10.6084/m9.figshare.c.3291326_d170.v1
title: unfolding mutation screen standard heat map for  lecithin retinol acyltransferase

description: UMS standard map
DOI: 10.6084/m9.figshare.c.3291326_d212.v1
title: atomic coordinates for retinal pigment epithelium-specific protein 65kDa homology model

description: protein atomic structure predicted using homology modeling
DOI: 10.6084/m9.figshare.c.3291326_d224.v1
title: unfolding mutation screen standard heat map for tissue inhibitor metalloprotease 3

description: UMS standard map
DOI: 10.6084/m9.figshare.c.3291326_d222.v1
title: unfolding mutation screen matrix for tissue inhibitor metalloprotease 3

description: UMS matrix
DOI: 10.6084/m9.figshare.c.3291326_d225.v2
title: unfolding mutation screen matrix for WD repeat domain 36

description: UMS matrix
DOI: 10.6084/m9.figshare.c.3291326_d214.v1
title: unfolding mutation screen foldability for retinal pigment epithelium-specific protein 65kDa

description: data descriptor file
DOI: 10.6084/m9.figshare.c.3302111_d74.v1
title: Basin characteristics in Africa

description: Basin characteristics in Africa
DOI: 10.6084/m9.figshare.c.3291326_d218.v1
title: python file for critical structure of tissue inhibitor metalloprotease 3  readable in UCSF Chimera session

description: critical foldability structure for the UCSF Chimera (Python)
DOI: 10.6084/m9.figshare.c.3291326_d225.v1
title: unfolding mutation screen standard heat map for WD repeat domain 36

description: UMS standard map
DOI: 10.6084/m9.figshare.c.3302111_d76.v1
title: Basin characteristics in Australia

description: Basin characteristics in Australia
DOI: 10.6084/m9.figshare.c.3291326_d239.v2
title: unfolding mutation screen matrix for BB1 crystallin

description: UMS matrix
DOI: 10.6084/m9.figshare.c.3291326_d240.v2
title: unfolding mutation screen matrix for Rab escort protein 1

description: UMS matrix
DOI: 10.6084/m9.figshare.c.3291326_d240.v1
title: unfolding mutation screen matrix for Rab escort protein 1

description: UMS matrix
DOI: 10.6084/m9.figshare.c.3291326_d238.v1
title: unfolding mutation screen python code

description: UMS Python program
DOI: 10.6084/m9.figshare.c.3291326_d238.v2
title: unfolding mutation screen python code

description: UMS Python program
DOI: 10.6084/m9.figshare.c.3291326_d239.v1
title: unfolding mutation screen matrix for BB1 crystallin

description: UMS matrix
DOI: 10.6084/m9.figshare.c.3302111_d79.v1
title: Basin characteristics in North America

description: Basin characteristics in North America
DOI: 10.6084/m9.figshare.c.3291326_d241.v1
title: unfolding mutation screen cluster heat map for interphotoreceptor retinoid binding protein domain 2

description: UMS cluster map
DOI: 10.6084/m9.figshare.c.3291326_d246.v2
title: unfolding mutation screen standard heat map for interphotoreceptor retinoid binding protein domain 2

description: UMS standard map
DOI: 10.6084/m9.figshare.c.3291326_d247.v2
title: unfolding mutation screen matrix for interphotoreceptor retinoid binding protein domain 1

description: UMS matrix
DOI: 10.6084/m9.figshare.c.3291326_d244.v1
title: unfolding mutation screen matrix for interphotoreceptor retinoid binding protein domain 2

description: UMS matrix
DOI: 10.6084/m9.figshare.c.3291326_d244.v2
title: unfolding mutation screen matrix for interphotoreceptor retinoid binding protein domain 2

description: UMS matrix
DOI: 10.25420/britishmuseum.27953541
title: The digital pathways of land use

description: Digital pathway from the studied territory realised with the participation of the community by capturing points in loco, and subsequently being compatible with the drawed map and aerial view of the territory.
DOI: 10.25420/britishmuseum.27955746
title: Crushing the earth to obtain a fine texture used to produce clay

description: The preparation of earth is done after drying it in the sun. Then, the potters crush it with the Pilão (Pestle), an object that is called "Mão (Hand)" in the community.
DOI: 10.6084/m9.figshare.c.3662366_d789.v1
title: Full body CT scan of an Alopias vulpinus (ZMA.PISC.111198)

description: This file includes 2708 DICOM files of a female Alopias vulpinus specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber ZMA.PISC.111198. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d794.v1
title: Full body CT scan of a Dalatias licha (ZMA.PISC.112272)

description: This file includes 2239 DICOM files of a male Dalatias licha specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber ZMA.PISC.112272. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3674959_d5
title: manual patch clamp raw.zip

description: Raw data on manual patch clamp measurements are stored under manual patch clamp raw. The first detachment tests subfolder contains data on the experiments with the three Accutase, Trypsin, and Detachin solutions. The second pharmacology subfolder contains the raw data on the pharmacological measurements.
DOI: 10.6084/m9.figshare.c.3662366_d790.v1
title: Full body CT scan of a Heptranchias perlo (ZMA.PISC.111361)

description: This file includes 1973 DICOM files of a female Heptranchias perlo specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber ZMA.PISC.111361. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3674959_d1
title: statistics pharmalogical research QPatch.xlsx

description: Documentation of the pharmacological results obtained with the automated QPatch system.
DOI: 10.6084/m9.figshare.c.3674959_d6
title: QPatch raw.zip

description: The QPatch raw folder contains all the project files (Nyborg_project568 to Nyborg_project849), as well as the Falster projects folder that contains all the assay protocol files used.
DOI: 10.6084/m9.figshare.c.3662366_d804.v1
title: Full body CT scan of a Prionace glauca (ZMA.PISC.116203)

description: This file includes 1873 DICOM files of a female Prionace glauca specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber ZMA.PISC.116203. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d805.v1
title: Full body CT scan of a Mustelus mustelus (ZMA.PISC.109497)

description: This file includes 1051 DICOM files of a female Mustelus mustelus specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber ZMA.PISC.109497. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.