cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.rxcnt9
title: Occurrence Download

description: A dataset containing 927 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Caracterización de la Biodiversidad Microbiológica y de Invertebrados de la Reserva Marina \"El Pelado\" a escala Taxonómica, Metabolómica y Meta genómica para su uso en salud humana y animal"
 ]
}

 The dataset includes 927 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057683-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x2k4cz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alticorpus profundicola Stauffer & McKaye, 1988",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.2919 -25.0813,35.4247 -24.9401,28.1382 -24.9401,28.1382 -33.4828,28.196 -33.4487,30.377 -31.6356,31.6769 -29.761,32.8025 -28.8229,33.358 -27.1012,33.4492 -25.7792,35.2919 -25.0813))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057684-250525065834625/datasets/export for details.
DOI: 10.15468/dl.pb3k6a
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Coenocystis Korshikov, 1953",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((30.5701 -24.0715,25.5395 -24.0715,25.5395 -28.5786,30.5701 -28.5786,30.5701 -24.0715))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057685-250525065834625/datasets/export for details.
DOI: 10.15468/dl.37xknp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alticorpus profundicola Stauffer & McKaye, 1988",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((37.1 -47.075,37.1382 -47.1134,37.1382 -46.9324,37.1 -47.075))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057686-250525065834625/datasets/export for details.
DOI: 10.7910/dvn/7rru7k
title: Raw data for publication titled "Bone Marrow Myeloid–Lymphatic Progenitors Expand Tumor Lymphatic Vasculature Through Cell Fusion"

description: This dataset contains raw files and data for publication titled 'Bone Marrow Myeloid–Lymphatic Progenitors Expand Tumor Lymphatic Vasculature Through Cell Fusion". 
Abstract: Background: Bone marrow (BM)-derived myeloid–lymphatic endothelial cell progenitors (M-LECPs) promote formation of tumor lymphatics that are responsible for metastasis to lymph nodes. The regenerative capacity of BM progenitors to other lineages is mediated through cell fusion, a process that delivers a pro-mitotic message directly to division-restricted cells. This suggested that M-LECPs might use a similar mechanism to induce division of lymphatic endothelial cells (LECs). Methods: To test this hypothesis, we determined expression of fusogenic markers in M-LECP produced in vitro and recruited to human or mouse tumors in vivo as well as quantified their fusion with LECs in both settings. Fusion in vivo was determined in female chimera mice grafted with male BM that have been implanted with MDA-MB-231 or EMT6 breast tumors. Co-staining for Y-chromosome and LEC-specific markers allowed us to quantify tumor lymphatic vessels fused with BM progenitors. Results: We found that both tumor-recruited and in-vitro-produced M-LECPs expressed multiple fusogenic regulators and possessed a significant fusogenic activity towards cultured and vessel-lining LECs. Y-chromosomes, a marker of fusion, were detected in nearly half of tumor lymphatics and were associated with mitotic division, vessel formation, and node metastasis. Both in vitro and in vivo assays showed dependency of fusion on Th2 and Toll-like receptor-4 (TLR4) pathways. Conclusions: This novel mechanism of tumor lymphatic formation triggered by fusion with BM myeloid–lymphatic progenitors suggests a variety of new targets for inhibition of metastatic spread.
Keywords: breast cancer; lymphangiogenesis; lymphatic metastasis; bone marrow; myeloid–lymphatic progenitors; cell fusion; chimera models; TLR4; Th2 cytokines
DOI: 10.15468/dl.akg73x
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Coenocystis Korshikov, 1953",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((27.1332 -20.158,25.5395 -23.2724,25.5395 -24.0715,30.5701 -24.0715,30.5701 -20.3186,29.6496 -19.6123,28.947 -19.4003,28.1821 -19.4609,27.6072 -19.7214,27.1332 -20.158))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057687-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.29366837
title: REMME & REBEAN scripts and models

description: We introduce two LMs, a pretrained foundation model REMME, aimed at understanding the DNA context of metagenomic reads, and the fine-tuned REBEAN for predicting the enzymatic potential encoded within the read-corresponding genes. By emphasizing function recognition over gene identification, REBEAN labels gene-encoded molecular functions of previously explored and new (orphan) sequences. Even though it was not trained to do so, REBEAN identifies the gene’s function-relevant parts. It thus expands enzymatic annotation of unassembled metagenomic reads. Here, we present novel enzymes discovered using our models, highlighting model impact on our understanding of microbial communities.Other data repo:Prabakaran, R; Bromberg, Yana (2025). EC First class predictions for metagenomic reads from Extreme environments. figshare. Dataset. https://doi.org/10.6084/m9.figshare.29286734.v1<br>
DOI: 10.6084/m9.figshare.29366837.v1
title: REMME & REBEAN scripts and models

description: We introduce two LMs, a pretrained foundation model REMME, aimed at understanding the DNA context of metagenomic reads, and the fine-tuned REBEAN for predicting the enzymatic potential encoded within the read-corresponding genes. By emphasizing function recognition over gene identification, REBEAN labels gene-encoded molecular functions of previously explored and new (orphan) sequences. Even though it was not trained to do so, REBEAN identifies the gene’s function-relevant parts. It thus expands enzymatic annotation of unassembled metagenomic reads. Here, we present novel enzymes discovered using our models, highlighting model impact on our understanding of microbial communities.Other data repo:Prabakaran, R; Bromberg, Yana (2025). EC First class predictions for metagenomic reads from Extreme environments. figshare. Dataset. https://doi.org/10.6084/m9.figshare.29286734.v1<br>
DOI: 10.5281/zenodo.15700143
title: Dataset for: Cultivation System-Specific Bacterial Biomarkers Reveal Microbiome-Mediated Intercropping Benefits in Sustainable Mulberry (Morus alba L.) Cultivation

description: This dataset supports the findings of the manuscript titled "Cultivation System-Specific Bacterial Biomarkers Reveal Microbiome-Mediated Intercropping Benefits in Sustainable Mulberry (Morus alba L.) Cultivation". The study investigated the impact of different intercropping systems on the rhizosphere bacterial communities of mulberry trees. The experiment involved four cultivation systems: mulberry monoculture (M_CK), mulberry-Morchella esculenta intercropping (M_ME), mulberry-Pisum sativum intercropping (M_P), and mulberry-Polygonatum sibiricum intercropping (M_PS). Rhizosphere soil samples (n=36) were collected from three soil depths (0-10 cm, 10-20 cm, and 20-30 cm) for each system. Data were generated by sequencing the V3-V4 hypervariable region of the bacterial 16S rRNA gene on an Illumina NovaSeq 6000 platform. The raw sequences were processed using the QIIME 2 (v2024.5) pipeline with the DADA2 plugin to denoise data and generate Amplicon Sequence Variants (ASVs). Taxonomic classification was performed against the SILVA (v138.2) database.
DOI: 10.5281/zenodo.15700142
title: Dataset for: Cultivation System-Specific Bacterial Biomarkers Reveal Microbiome-Mediated Intercropping Benefits in Sustainable Mulberry (Morus alba L.) Cultivation

description: This dataset supports the findings of the manuscript titled "Cultivation System-Specific Bacterial Biomarkers Reveal Microbiome-Mediated Intercropping Benefits in Sustainable Mulberry (Morus alba L.) Cultivation". The study investigated the impact of different intercropping systems on the rhizosphere bacterial communities of mulberry trees. The experiment involved four cultivation systems: mulberry monoculture (M_CK), mulberry-Morchella esculenta intercropping (M_ME), mulberry-Pisum sativum intercropping (M_P), and mulberry-Polygonatum sibiricum intercropping (M_PS). Rhizosphere soil samples (n=36) were collected from three soil depths (0-10 cm, 10-20 cm, and 20-30 cm) for each system. Data were generated by sequencing the V3-V4 hypervariable region of the bacterial 16S rRNA gene on an Illumina NovaSeq 6000 platform. The raw sequences were processed using the QIIME 2 (v2024.5) pipeline with the DADA2 plugin to denoise data and generate Amplicon Sequence Variants (ASVs). Taxonomic classification was performed against the SILVA (v138.2) database.
DOI: 10.15468/dl.2uw6sc
title: Occurrence Download

description: A dataset containing 204949 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((6.37632 43.53022,6.58543 43.53022,6.58543 43.79243,6.37632 43.79243,6.37632 43.53022))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 204949 records from 437 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057662-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pwgt43
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alticorpus profundicola Stauffer & McKaye, 1988",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((28.1382 -15.9401,19.1382 -15.9401,19.1382 -24.9401,28.1382 -24.9401,28.1382 -15.9401))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057688-250525065834625/datasets/export for details.
DOI: 10.15468/dl.29h3rt
title: Occurrence Download

description: A dataset containing 100817 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Erigeron sumatrensis Retz."
 ]
}

 The dataset includes 100817 records from 753 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057678-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5883/bold:acd7918
title: Overview of Barcode Index Number - BOLD:ACD7918

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.21233/hbdg-nx83
title: ABD157 pollen surface sample dataset

description: Raw data for the ABD157 pollen surface sample dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.5883/bold:acd7935
title: Overview of Barcode Index Number - BOLD:ACD7935

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd7936
title: Overview of Barcode Index Number - BOLD:ACD7936

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd7937
title: Overview of Barcode Index Number - BOLD:ACD7937

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd7960
title: Overview of Barcode Index Number - BOLD:ACD7960

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd7964
title: Overview of Barcode Index Number - BOLD:ACD7964

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.21233/bxdy-tk12
title: ABD159 pollen surface sample dataset

description: Raw data for the ABD159 pollen surface sample dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.5883/bold:acd7968
title: Overview of Barcode Index Number - BOLD:ACD7968

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd7976
title: Barcode Index Number BOLD:ACD7976

description: A cluster of barcode records associated with a Barcode Index Number(BIN). Each cluster is a proxy for a named or unnamed species. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd7987
title: Overview of Barcode Index Number - BOLD:ACD7987

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd7988
title: Overview of Barcode Index Number - BOLD:ACD7988

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.21233/rwn9-9e60
title: ABD160 pollen surface sample dataset

description: Raw data for the ABD160 pollen surface sample dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.5883/bold:acd8024
title: Overview of Barcode Index Number - BOLD:ACD8024

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd8042
title: Overview of Barcode Index Number - BOLD:ACD8042

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd8045
title: Overview of Barcode Index Number - BOLD:ACD8045

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd8056
title: Overview of Barcode Index Number - BOLD:ACD8056

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd8078
title: Overview of Barcode Index Number - BOLD:ACD8078

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.21233/d8p0-vz87
title: ABD161 pollen surface sample dataset

description: Raw data for the ABD161 pollen surface sample dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.5883/bold:acd8082
title: Overview of Barcode Index Number - BOLD:ACD8082

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd8094
title: Overview of Barcode Index Number - BOLD:ACD8094

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd8095
title: Overview of Barcode Index Number - BOLD:ACD8095

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd8097
title: Overview of Barcode Index Number - BOLD:ACD8097

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd8098
title: Barcode Index Number BOLD:ACD8098

description: A cluster of barcode records associated with a Barcode Index Number(BIN). Each cluster is a proxy for a named or unnamed species. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.21233/7c1s-am49
title: Okstukuk Lake pollen surface sample dataset

description: Raw data for the Okstukuk Lake pollen surface sample dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.5883/bold:acd8103
title: Overview of Barcode Index Number - BOLD:ACD8103

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd8107
title: Barcode Index Number BOLD:ACD8107

description: A cluster of barcode records associated with a Barcode Index Number(BIN). Each cluster is a proxy for a named or unnamed species. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd8108
title: Barcode Index Number BOLD:ACD8108

description: A cluster of barcode records associated with a Barcode Index Number(BIN). Each cluster is a proxy for a named or unnamed species. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd8114
title: Overview of Barcode Index Number - BOLD:ACD8114

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd8115
title: Overview of Barcode Index Number - BOLD:ACD8115

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.21233/y3wq-by65
title: ABD165 pollen surface sample dataset

description: Raw data for the ABD165 pollen surface sample dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.5883/bold:acd8129
title: Overview of Barcode Index Number - BOLD:ACD8129

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd8132
title: Overview of Barcode Index Number - BOLD:ACD8132

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd8152
title: Barcode Index Number BOLD:ACD8152

description: A cluster of barcode records associated with a Barcode Index Number(BIN). Each cluster is a proxy for a named or unnamed species. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd8159
title: Overview of Barcode Index Number - BOLD:ACD8159

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd8164
title: Barcode Index Number BOLD:ACD8164

description: A cluster of barcode records associated with a Barcode Index Number(BIN). Each cluster is a proxy for a named or unnamed species. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.21233/mefn-tc80
title: ABD166 pollen surface sample dataset

description: Raw data for the ABD166 pollen surface sample dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.5883/bold:acd8179
title: Overview of Barcode Index Number - BOLD:ACD8179

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd8187
title: Overview of Barcode Index Number - BOLD:ACD8187

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd8191
title: Barcode Index Number BOLD:ACD8191

description: A cluster of barcode records associated with a Barcode Index Number(BIN). Each cluster is a proxy for a named or unnamed species. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd8194
title: Overview of Barcode Index Number - BOLD:ACD8194

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.21233/vr4z-ek23
title: ABD168 pollen surface sample dataset

description: Raw data for the ABD168 pollen surface sample dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.5883/bold:acd8195
title: Overview of Barcode Index Number - BOLD:ACD8195

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd8199
title: Overview of Barcode Index Number - BOLD:ACD8199

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd8200
title: Overview of Barcode Index Number - BOLD:ACD8200

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd8202
title: Overview of Barcode Index Number - BOLD:ACD8202

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acd8207
title: Overview of Barcode Index Number - BOLD:ACD8207

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.21233/pg4n-0539
title: ABD169 pollen surface sample dataset

description: Raw data for the ABD169 pollen surface sample dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.5883/bold:acd8213
title: Barcode Index Number BOLD:ACD8213

description: A cluster of barcode records associated with a Barcode Index Number(BIN). Each cluster is a proxy for a named or unnamed species. Records consist of specimen metadata, specimen images, and sequence data.