cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.971115
title: Ventilation record of cold-water corals from Mauritania over the last 30.000 years

description: Combined 230ThU and 14C ages in cold-water corals allow accurate reconstruction of ventilation in the past. Here we present a ventilation record of cold-water corals from Mauritania (GeoB 14904-2, 517m water depth) over the last 30,000 years. The core was retrieved with a gravity corer during the RV Maria S. Merian expedition MSM16-3 Phaeton (Westphal et al 2014) and coral fragments of the species Desmophyllum pertusum (formerly known as Lophelia pertusa) were collected at various core depths. They complement recent findings on the ventilation of the eastern Atlantic (Beisel et al 2023). The corals were precisely dated using 230ThU and 14C dating. The 230ThU method is described in detail in Wefing et al 2017, Kerber et al 2023, the 14C method in Beisel et al (submitted). Benthic-atmosphere ages were calculated with IntCal20 (Reimer et al 2020). Results are discussed in Beisel et al (submitted).
DOI: 10.22002/5cejs-xka35
title: Lp02 ΔpilQ

description: Raw data files of Lp02 ΔpilQ
description: <strong>Tilt Series Date:</strong> 2017-03-02</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Materials Sciences F30</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor, also manually processed</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Nicholas Cianciotto at Northwestern University Medical SchoolData collected and processed by Debnath Ghosal</p>
<strong>Sample Preparation:</strong> 4 grids were frozen for Lp02 at OD= 2.8 Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 3 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-03-02-22/rawdata/</p>delta_Q0022.mrc,  Tilt Series (Pixel Size 0.39 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-03-02-22/rawdata/delta_Q0022.mrc"
        > <i class="download icon"></i> Download </a></p>

        delta_Q0022_full.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-03-02-22/3dimage_82755/delta_Q0022_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/1st99-z4393
title: Legionella IcmQ71::TevS 42C_On

description: Legionella IcmQ71::TevS 42C_On (HS004 E)
description: <strong>Tilt Series Date:</strong> 2019-05-31</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-51.0°, 51.0°), step: 3.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -6.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Howard Shuman (University of Chicago). Data collected by Debnath Ghosal and Yuxi Liu.</p>
<strong>Sample Preparation:</strong> Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 3 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-05-31-93/rawdata/</p>HS004E-area9-tomo0016.mrc,  Tilt Series (Pixel Size 0.26 nm), 996.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        HS004E-area9-tomo0016_part35_1.rec,  Reconstruction (Pixel Size 1.04 nm), 445.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.1594/pangaea.949624
title: Thorium-Uranium dating of cold-water corals from Mole and Elf Mound, Western Mediterranean Sea (Alboran Sea, East Melilla)

description: This data presents high precision Th/U ages from cold-water corals obtained from gravity cores collected in the western Mediterranean Sea (Alboran Sea, East Melilla). Together with drill records of the sea floor drill rig MARUM-MeBo70 (https://doi.pangaea.de/10.1594/PANGAEA.945132), these data provide new insights into the initiation and development of the Mediterranean coral mounds since the Mid-Pleistocene. The coral ages document mound development pulses, which are remarkably coherent with precession-driven changes in African hydroclimate. The data supports studies on the relevance of past changes in continental hydroclimate and their implications on oceanic processes including the complex processes leading to the aggradation of cold-water coral mounds.
DOI: 10.1594/pangaea.969398
title: Calibrated stable water isotope measurements from the Zeppelin observatory by Ny-Ålesund, Svalbard during February and March 2020

description: During a 5-week measurement campaign (ISLAS2020) in February and March 2020, we collected measurements of the stable isotope composition in atmospheric water in Svalbard and along the Norwegian coast. This included discrete collecting of precipitation at Ny-Ålesund, Longyearbyen, Tromsø, Andenes, Ålesund, and Bergen. Additionally, Ny-Ålesund hosted the primary field experiment of the campaign, with a cavity ring-down spectrometer (CRDS) installation, measuring the in-situ stable isotope composition of the ambient air at three deployment sites. At two of these sites, we performed near-surface vertical profiling of stable water isotopes, to quantify the isotopic gradients above the snow-covered tundra and the open fjord water. These profiles were collocated with high-resolution temperature measurements from fiber-optic distributed sensing methods. At each of the three CRDS deployment sites, automated weather stations logged the ambient meteorological conditions. In addition to the precipitation collected at Ny- Ålesund, we took multiple samples of local snowpack and fjord water (Kongsfjorden). All stable water isotope measurements have been calibrated onto the VSMOW-SLAP scale. Vapor measurements from Ny- Ålesund have also been corrected for mixing ratio - isotope ratio dependency. The data from the ISLAS2020 measurement campaign can facilitate studies on phase changes in the atmospheric water cycle using stable water isotopes as a constraint.This dataset contains observational data from the Zeppelin deployment site at Ny-Ålesund, Svalbard, Norway, during the ISLAS2020 field experiment. The primary purpose for the collection of this dataset was to obtain free-tropospheric, in-situ stable water isotope measurements in atmospheric water vapor. These measurements were obtained with a cavity ring-down spectrometer installed at the Zeppelin mountain observatory. During this deployment, the instrument was connected to various inlets, across three subdeployment periods. The ambient meteorological conditions associated with these isotopic measurements are provided by an automated weather station. The observational period lasts 65.0 hours (about 2 and a half days), from 2020-02-29 15:30:00 to 2020-03-03 08:30:00 UTC.
DOI: 10.1594/pangaea.969399
title: Calibrated stable water isotope and temperature profiles above fjord water by Ny-Ålesund, Svalbard during February and March 2020

description: During a 5-week measurement campaign (ISLAS2020) in February and March 2020, we collected measurements of the stable isotope composition in atmospheric water in Svalbard and along the Norwegian coast. This included discrete collecting of precipitation at Ny-Ålesund, Longyearbyen, Tromsø, Andenes, Ålesund, and Bergen. Additionally, Ny-Ålesund hosted the primary field experiment of the campaign, with a cavity ring-down spectrometer (CRDS) installation, measuring the in-situ stable isotope composition of the ambient air at three deployment sites. At two of these sites, we performed near-surface vertical profiling of stable water isotopes, to quantify the isotopic gradients above the snow-covered tundra and the open fjord water. These profiles were collocated with high-resolution temperature measurements from fiber-optic distributed sensing methods. At each of the three CRDS deployment sites, automated weather stations logged the ambient meteorological conditions. In addition to the precipitation collected at Ny- Ålesund, we took multiple samples of local snowpack and fjord water (Kongsfjorden). All stable water isotope measurements have been calibrated onto the VSMOW-SLAP scale. Vapor measurements from Ny- Ålesund have also been corrected for mixing ratio - isotope ratio dependency. The data from the ISLAS2020 measurement campaign can facilitate studies on phase changes in the atmospheric water cycle using stable water isotopes as a constraint.This dataset contains observational data from the Fjord deployment site at Ny-Ålesund, Svalbard, Norway, during the ISLAS2020 field experiment. The primary purpose for the collection of this dataset was to obtain near-surface (&lt;5 m) profiles of in-situ stable water isotope measurements in atmospheric water vapor. These profiles were obtained with a cavity ring-down spectrometer installed inside a custom-built profiling system (Seidl et al., 2023). In addition, temperature profiles with high spatial resolution are observed with fiber-optic distributed sensing instrumentation (Zeller et al., 2021). The ambient meteorological conditions associated with these isotopic measurements are provided by an automated weather station. The observational period lasts 180.0 hours (about 1 week), from 2020-03-07 00:00:00 to 2020-03-14 12:00:00 UTC. During this period, 5 near-surface isotopic profiles were conducted over the partially ice-covered fjord water.
DOI: 10.22002/ac57r-cwx86
title: JV9082_Janelia42k

description: DotF-sfGFP fusion
description: <strong>Tilt Series Date:</strong> 2018-08-29</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-54.0°, 54.0°), step: 3.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -7.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Joseph P. Vogel, Washington University School of Medicine. Data collected and processed by Debnath Ghosal. Janelia Krios.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in AYE liquid culture with following supplements: ferric nitrate, cysteine hydrochloride and thymidine.</p>
<strong>Sample Preparation:</strong> 6 grids were frozen for the JV9082 strain (2x concentrated culture); Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 4.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-29-249/rawdata/</p>JV9082_20180901a0023.mrc,  Tilt Series (Pixel Size 0.26 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        JV9082_20180901a0023_full.rec,  Reconstruction (Pixel Size 1.04 nm), 445.4 MB  
        
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DOI: 10.5281/zenodo.15601966
title: TABLE I in Description of the tadpoles of Proceratophrys cristiceps (Anura: Cycloramphidae, Odontophrynini)

description: TABLE I. Average (x), standard deviation (dp), and amplitude (minimum­maximum) of the averages (mm) for tadpoles of Proceratophris cristiceps (n = 20, stage 39).
MeasurementsxStandard DeviationAmplitudeTotal length30.31± 1.5926.0 – 33.0Body length12.45± 0.7811.0 – 14.0Maximum body height5.51± 0.565.0 – 6.9Maximum body width7.15± 0.396.5 – 8.0Tail length19.44± 1.2116.5 – 21.45Maximum tail muscle height2.54± 0.152.25 – 2.87Maximum dorsal fin height2.04± 0.171.75 – 2.37Maximum ventral fin height1.52± 0.151.25 – 1.87Eye diameter1.89± 0.081.75 – 2.0Internasal distance1.09± 0.110.87 – 1.25Interorbital distance1.91± 0.141.75 – 2.25Eye­snout distance1.94± 0.131.62 – 2.12Eye­nare distance0.99± 0.330.75 – 2.25Oral disk width2.58± 0.142.37 – 2.75
description: Published as part of Vieira, Washington Luiz Da Silva, Vieira, Kleber Da Silva & Santana, Gindomar Gomes, 2007, Description of the tadpoles of Proceratophrys cristiceps (Anura: Cycloramphidae, Odontophrynini), pp. 20 in Zootaxa 1397 (1) on page 20, DOI: 10.11646/zotaxa.1397.1.2, http://zenodo.org/record/10087701
DOI: 10.15468/dl.8erb75
title: Occurrence Download

description: A dataset containing 4255 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aloe vera (L.) Burm.f."
 ]
}

 The dataset includes 4255 records from 331 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022512-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15597368
title: INTEGRATIV YONDASHUV IJODIY VA TAHLILIY FIKRLASH KO'NIKMALARINI RIVOJLANTIRISHNING ASOSIY OMILI
DOI: 10.5281/zenodo.15597369
title: INTEGRATIV YONDASHUV IJODIY VA TAHLILIY FIKRLASH KO'NIKMALARINI RIVOJLANTIRISHNING ASOSIY OMILI
DOI: 10.15468/dl.tpg9dw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Copadichromis diplostigma, Copadichromis geertsi, Copadichromis ilesi, Copadichromis insularis, Copadichromis jacksoni, Copadichromis likomae, Copadichromis mbenjii, Copadichromis melas, Copadichromis mloto, Copadichromis nkatae, Copadichromis parvus, Copadichromis pleurostigma, Copadichromis pleurostigmoides, Copadichromis quadrimaculatus, Copadichromis trewavasae, Copadichromis trimaculatus, Copadichromis verduyni, Copadichromis virginalis, Coptodon bakossiorum, Coptodon bemini, Coptodon bythobates, Coptodon cameronensis, Coptodon camerunensis, Coptodon coffea, Coptodon congica, Coptodon dageti, Coptodon deckerti, Coptodon discolor, Coptodon ejagham, Coptodon flava, Coptodon fusiforme, Coptodon guineensis, Coptodon gutturosa, Coptodon imbriferna, Coptodon ismailiaensis, Coptodon kottae, Coptodon louka, Coptodon margaritacea, Coptodon nigrans, Coptodon nyongana, Coptodon rendalli, Coptodon rheophila, Coptodon snyderae, Coptodon spongotroktis, Coptodon tholloni, Coptodon thysi, Coptodon walteri, Coptodon zillii, Coptostomabarbus bellcrossi, Coptostomabarbus wittei, Corematodus shiranus, Corematodus taeniatus, Coryogalops william, Cotylopus acutipinnis, Cotylopus rubripinnis, Crenimugil buchanani, Crenimugil crenilabis, Crenimugil seheli, Cromeria nilotica, Cromeria occidentalis, Ctenochromis horei, Ctenochromis luluae, Ctenochromis oligacanthus, Ctenochromis polli, Ctenogobius lepturus, Ctenopharyngodon idella, Ctenopharynx intermedius, Ctenopharynx nitidus, Ctenopharynx pictus, Ctenopoma acutirostre, Ctenopoma ashbysmithi, Ctenopoma kingsleyae, Ctenopoma machadoi, Ctenopoma multispine, Ctenopoma maculatum, Ctenopoma muriei, Ctenopoma nebulosum, Ctenopoma nigropannosum, Ctenopoma ocellatum, Ctenopoma petherici, Ctenopoma weeksii, Cunningtonia longiventralis, Cyathochromis obliquidens, Cyathopharynx furcifer, Cyclopharynx fwae, Cyclopharynx schwetzi, Cynotilapia afra, Cynotilapia aurifrons, Cynotilapia axelrodi, Cynotilapia chilundu, Cynotilapia pulpican, Cynotilapia zebroides, Microchromis zebroides, Cyphomyrus discorhynchus, Cyphomyrus macrops, Hippopotamyrus macrops, Cyphomyrus psittacus, Hippopotamyrus psittacus, Cyphomyrus wilverthi, Hippopotamyrus wilverthi)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((5.9985 -1.8197,6.1596 -1.4443,5.9957 -1.0552,5.6304 -0.9035,5.2841 -1.0308,5.1008 -1.4539,5.2222 -1.7725,5.639 -1.9676,5.9985 -1.8197))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007589-250827131500795/datasets/export for details.
DOI: 10.15468/dl.pscgn4
title: Occurrence Download

description: A dataset containing 409 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polycera capensis",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 409 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007590-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h3xzbs
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Copadichromis diplostigma, Copadichromis geertsi, Copadichromis ilesi, Copadichromis insularis, Copadichromis jacksoni, Copadichromis likomae, Copadichromis mbenjii, Copadichromis melas, Copadichromis mloto, Copadichromis nkatae, Copadichromis parvus, Copadichromis pleurostigma, Copadichromis pleurostigmoides, Copadichromis quadrimaculatus, Copadichromis trewavasae, Copadichromis trimaculatus, Copadichromis verduyni, Copadichromis virginalis, Coptodon bakossiorum, Coptodon bemini, Coptodon bythobates, Coptodon cameronensis, Coptodon camerunensis, Coptodon coffea, Coptodon congica, Coptodon dageti, Coptodon deckerti, Coptodon discolor, Coptodon ejagham, Coptodon flava, Coptodon fusiforme, Coptodon guineensis, Coptodon gutturosa, Coptodon imbriferna, Coptodon ismailiaensis, Coptodon kottae, Coptodon louka, Coptodon margaritacea, Coptodon nigrans, Coptodon nyongana, Coptodon rendalli, Coptodon rheophila, Coptodon snyderae, Coptodon spongotroktis, Coptodon tholloni, Coptodon thysi, Coptodon walteri, Coptodon zillii, Coptostomabarbus bellcrossi, Coptostomabarbus wittei, Corematodus shiranus, Corematodus taeniatus, Coryogalops william, Cotylopus acutipinnis, Cotylopus rubripinnis, Crenimugil buchanani, Crenimugil crenilabis, Crenimugil seheli, Cromeria nilotica, Cromeria occidentalis, Ctenochromis horei, Ctenochromis luluae, Ctenochromis oligacanthus, Ctenochromis polli, Ctenogobius lepturus, Ctenopharyngodon idella, Ctenopharynx intermedius, Ctenopharynx nitidus, Ctenopharynx pictus, Ctenopoma acutirostre, Ctenopoma ashbysmithi, Ctenopoma kingsleyae, Ctenopoma machadoi, Ctenopoma multispine, Ctenopoma maculatum, Ctenopoma muriei, Ctenopoma nebulosum, Ctenopoma nigropannosum, Ctenopoma ocellatum, Ctenopoma petherici, Ctenopoma weeksii, Cunningtonia longiventralis, Cyathochromis obliquidens, Cyathopharynx furcifer, Cyclopharynx fwae, Cyclopharynx schwetzi, Cynotilapia afra, Cynotilapia aurifrons, Cynotilapia axelrodi, Cynotilapia chilundu, Cynotilapia pulpican, Cynotilapia zebroides, Microchromis zebroides, Cyphomyrus discorhynchus, Cyphomyrus macrops, Hippopotamyrus macrops, Cyphomyrus psittacus, Hippopotamyrus psittacus, Cyphomyrus wilverthi, Hippopotamyrus wilverthi)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((50.7597 -16.0878,50.8081 -15.9401,46.1382 -15.9401,46.1382 -24.9401,47.6434 -24.9401,49.8893 -18.4615,50.0065 -17.575,50.4326 -17.1196,50.4413 -16.4368,50.7597 -16.0878))"
 ]
}

 The dataset includes 62 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007591-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bb2j9r
title: Occurrence Download

description: A dataset containing 471410 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus",
 "Year 2019-2024"
 ]
}

 The dataset includes 471410 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007557-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.