cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/rgtddfyp97.1
title: Modular microenvironment components reproduce vascular dynamics de novo in a multi-scale agent-based model: VASCULAR FUNCTION

description: Data and results for `VASCULAR FUNCTION` simulations. Simulations of cancerous cells in colony and tissue contexts with pattern and various graph layouts with degradation by cancerous cells and vascular remodeling. Each condition is run for 15 days (21600 ticks) with 10 replicates (random seeds 0 - 9). Cancerous cells (max_height x 1.5, meta_pref x 1.5, migra_threshold x 0.5) are introduced to the center of the environment after a 1 day delay. Snapshots are taken every 0.5 days (720 ticks). The data folder contains .tar.xz compressed replicate sets. The data.graph folder contains .tar.xz compressed replicate sets for .GRAPH output. The results folder contains .pkl files of data parsed into arrays. Simulations are labeled as: [context]_[sites]_[layout] - [context] - C = colony context, cancerous cells only - CH = tissue context, cancerous cells and healthy cells - [sites] - PATTERN = site architecture defined by pattern - GRAPH = site architecture defined by graph layout - [layout] - simulations with PATTERN do not have a layout label - Lav = line root graph with one artery and one vein (L11) - Lava = line root graph with two arteries and one vein (L21) - Lvav = line root graph with one artery and two veins (L12) - Sav = single root graph with one artery and one vein (S11) - Savav = single root graph with two arteries and two veins (S22)
DOI: 10.17632/grtx87d27y.1
title: Modular microenvironment components reproduce vascular dynamics de novo in a multi-scale agent-based model: VASCULAR DAMAGE

description: Data and results for `VASCULAR DAMAGE` simulations. Simulations of cancerous cells in colony and tissue contexts with different damage multipliers (from 0 to 1 in increments of 0.1) with relative hemodynamic fraction of 0 (static sources) or 1 (estimated hemodynamics). Each condition is run for 15 days (21600 ticks) with 10 replicates (random seeds 0 - 9). Cancerous cells (max_height x 1.5, meta_pref x 1.5, migra_threshold x 0.5) are introduced to the center of the environment after a 1 day delay. Snapshots are taken every 0.5 days (720 ticks). The data folder contains .tar.xz compressed replicate sets. The results folder contains .pkl files of data parsed into arrays. Simulations are labeled as: [context]_[damage]_[fraction] - [context] - C = colony context, cancerous cells only - CH = tissue context, cancerous cells and healthy cells - [damage] - ### = value of damage parameter (###/100) - [fraction] - ### = fraction of hemodynamic factor (###/100)
DOI: 10.6084/m9.figshare.14798301
title: WOS_138.txt

description: This text file, exported from Web of Science, has 138 selected translation technology teaching related research papers.
DOI: 10.6084/m9.figshare.14798301.v2
title: WOS_138.txt

description: This text file, exported from Web of Science, has 138 selected translation technology teaching related research papers.
DOI: 10.6084/m9.figshare.14798301.v1
title: WOS_138.txt

description: This text file, exported from Web of Science, has 138 selected translation technology teaching related research papers.
DOI: 10.17632/8crspx6pkx.1
title: pet ct data

description: pet ct data
DOI: 10.17632/2jc6fbjkkx.1
title: Mechanisms of lactic acid gustatory attraction in Drosophila. Stanley et al.
DOI: 10.17632/gbxvf6vfm6.3
title: Supplementary Material

description: Supplementary material that provides coal mining water footprint inventory data in South Africa.
DOI: 10.17632/gb7n9tpfrx.1
title: Lipids from stool

description: In this study, we investigated how positively and negatively-charged lipid extract from feces of standard chow-fed mice (NL), by a simple extraction method, impact cell functioning. MTT assays for assessing cell metabolic activity indicated that NL differently affects tumor-derived cell lines, reducing the viability of Hela and HepG2 cells but it does not affect PC3 cells. Viabilities of 3T3-L1 fibroblasts and MSCs were not affected by NL. Additionally, NL displayed partial PPAR γ agonist action on reporter gene assays and on differentiation of 3T3-L1 fibroblasts to adipocytes. Transcriptome analyses showed that NL suppresses inflammatory response via toll-like receptor 4 (TLR4) signaling and affects PPAR target gene expression. Lipidomic analyses revealed significant differences of positively and negatively-charged lipid content of CD and NL, with NL containing less cancer correlated lipids and more apoptosis and necroptosis lipids than chow diet. These findings indicate that NL affect important aspects of cellular function and, therefore, may be considered as a promising therapeutic alternative to fecal transplant (FT).
DOI: 10.17632/mknc4bn793.1
title: A yeast FRET biosensor enlightens cAMP signalling dataset

description: The cAMP-PKA signalling cascade in budding yeast regulates adaptation to changing environments. We developed yEPAC, a FRET-based biosensor for cAMP measurements in yeast. We used this sensor with flow cytometry for high-throughput single cell-level quantification during dynamic changes in response to sudden nutrient transitions. We found that the characteristic cAMP peak differentiates between different carbon source transitions, and is rather homogenous among single-cells, especially for transitions to glucose. The peaks are mediated by a combination of extracellular sensing and intracellular metabolism. Moreover, the cAMP peak follows the Weber-Fechner law; its height scales with the relative, and not the absolute, change in glucose. Lastly, our results suggest that the cAMP peak height conveys information about prospective growth rates. In conclusion, our yEPAC-sensor makes possible new avenues for understanding yeast physiology, signalling and metabolic adaptation.
DOI: 10.6084/m9.figshare.13717084.v1
title: Chlorophyll-a Statistics Summary (2003-2019)

description: <b>Chlorophyll-a </b>total statistics summary (2003-2019), including mean, max, min, range, and standard deviation in GeoTIFF format.Review publication for a more detailed data description.For R users, an R script has been provided to download data from Figshare directly from R. Script can be found at https://doi.org/10.6084/m9.figshare.13692037 and https://rpubs.com/mcastan2/DGCC_supp_material with additional supplementary code material.
DOI: 10.25403/upresearchdata.13309421
title: Exploring the socialisation experiences of female board members

description: This is dataset for a qualitative research exploring the socialization experiences of female board members.The following files are part of supporting data:- Consent forms- Transcripts- ATLAS-ti code list
DOI: 10.25403/upresearchdata.13309421.v1
title: Exploring the socialisation experiences of female board members

description: This is dataset for a qualitative research exploring the socialization experiences of female board members.The following files are part of supporting data:- Consent forms- Transcripts- ATLAS-ti code list
DOI: 10.15468/bwyp2a
title: The Henri Milne EDWARDS’ (1800 - 1885) collection of recent and fossil bryozoa

description: This dataset contains the digitized treatments in Plazi based on the original journal article D’Hondt, J. - L. (2006): The Henri Milne EDWARDS’ (1800 - 1885) collection of recent and fossil bryozoa. Linzer biologische Beiträge 38 (1): 25-38, DOI: http://doi.org/10.5281/zenodo.4523053
DOI: 10.5281/zenodo.4522160
title: Data set from Dellafiore, F., Flocco, S. F., Arrigoni, C., Barello, S., Nania, T. et al. (2020). Italian Validation of the Healthcare Needs Scale for Youth with Congenital Heart Disease and Its Short-Form Development. Congenital Heart Disease, 15(3), 167–180.

description: Data set from the article Dellafiore, F., Flocco, S. F., Arrigoni, C., Barello, S., Nania, T. et al. (2020). Italian Validation of the Healthcare Needs Scale for Youth with Congenital Heart Disease and Its Short-Form Development. <em>Congenital Heart Disease, 15(3)</em>, 167–180. This is the abstract: <strong>Aims:</strong> This study aimed at providing an Italian short version of the ‘healthcare needs scale for youth with congenital heart disease’ (I-HNS-CHD-s), describing its construct validity and reliability. <strong>Methods:</strong> A multi-method and multi-phase design were adopted. Phase one referred to the cultural-linguistic validation of the original scale into Italian. Phase two tasted content and face validity of the Italian-translated scale. Phase three included the psychometric validation process of scale, encompassed two different steps: first cross-sectional data collection (sample A) purposed at determining the psychometric characteristics of the I-HNS-CHD-s, using an exploratory factor analysis (EFA). Then, a second round of cross-sectional data collection (sample B) was performed using the version of I-HNS-CHD-s derived from the previous step, and it purposed at confirming the scale factor structure and at assessing its reliability. <strong>Results:</strong> I-HNS-CHD-s showed evidence of face and content validity, adequate construct and internal consistency and stability. Specifically, I-HNS-CHD-s had 14 items kept by four domains, labelled as follows: Healthcare education, clinical support, emotional support, continuum of care. These domains were predicted by a secondorder factor, which was labelled as Healthcare needs. Overall I-HNS-CHD-s encompassed only the items that showed high performance in the psychometric analysis. Accordingly, I-HNS-CHD-s is a shorter form of the original scale (14 items instead of 25). <strong>Conclusions:</strong> I-HNS-CHD-s is a psychometrically robust measure of the healthcare and psychosocial needs of Italian adolescents and young adults with congenital heart disease.
DOI: 10.5281/zenodo.4522159
title: Data set from Dellafiore, F., Flocco, S. F., Arrigoni, C., Barello, S., Nania, T. et al. (2020). Italian Validation of the Healthcare Needs Scale for Youth with Congenital Heart Disease and Its Short-Form Development. Congenital Heart Disease, 15(3), 167–180.

description: Data set from the article Dellafiore, F., Flocco, S. F., Arrigoni, C., Barello, S., Nania, T. et al. (2020). Italian Validation of the Healthcare Needs Scale for Youth with Congenital Heart Disease and Its Short-Form Development. <em>Congenital Heart Disease, 15(3)</em>, 167–180. This is the abstract: <strong>Aims:</strong> This study aimed at providing an Italian short version of the ‘healthcare needs scale for youth with congenital heart disease’ (I-HNS-CHD-s), describing its construct validity and reliability. <strong>Methods:</strong> A multi-method and multi-phase design were adopted. Phase one referred to the cultural-linguistic validation of the original scale into Italian. Phase two tasted content and face validity of the Italian-translated scale. Phase three included the psychometric validation process of scale, encompassed two different steps: first cross-sectional data collection (sample A) purposed at determining the psychometric characteristics of the I-HNS-CHD-s, using an exploratory factor analysis (EFA). Then, a second round of cross-sectional data collection (sample B) was performed using the version of I-HNS-CHD-s derived from the previous step, and it purposed at confirming the scale factor structure and at assessing its reliability. <strong>Results:</strong> I-HNS-CHD-s showed evidence of face and content validity, adequate construct and internal consistency and stability. Specifically, I-HNS-CHD-s had 14 items kept by four domains, labelled as follows: Healthcare education, clinical support, emotional support, continuum of care. These domains were predicted by a secondorder factor, which was labelled as Healthcare needs. Overall I-HNS-CHD-s encompassed only the items that showed high performance in the psychometric analysis. Accordingly, I-HNS-CHD-s is a shorter form of the original scale (14 items instead of 25). <strong>Conclusions:</strong> I-HNS-CHD-s is a psychometrically robust measure of the healthcare and psychosocial needs of Italian adolescents and young adults with congenital heart disease.
DOI: 10.6084/m9.figshare.12016989
title: counts

description: <b>tblcounts_asv_melt.csv: A melted table containing</b><b>the sequence counts of each ASV detected in 12,546 stool samples</b> SampleID: stool sample identifier ASV: identifier of the ASVs Count: number of reads<b><br></b> <b>tblqpcr.csv: 16S rRNA qPCR data for 3,342 stool samples</b> SampleID: stool sample identifier qPCR16S: 16S copies per gram of stool sample<br><b>tblcounts_{asv,genus,family,order,class,phylum}_wide.csv: Wide-format taxa-by-sample table of counts at different taxonomic levels</b>
DOI: 10.6084/m9.figshare.12016989.v7
title: counts

description: <b>tblcounts_asv_melt.csv: A melted table containing</b><b>the sequence counts of each ASV detected in 12,546 stool samples</b> SampleID: stool sample identifier ASV: identifier of the ASVs Count: number of reads<b><br></b> <b>tblqpcr.csv: 16S rRNA qPCR data for 3,342 stool samples</b> SampleID: stool sample identifier qPCR16S: 16S copies per gram of stool sample<br><b>tblcounts_{asv,genus,family,order,class,phylum}_wide.csv: Wide-format taxa-by-sample table of counts at different taxonomic levels</b><br><b><br></b><b>tblrelab_{asv,genus,family,order,class,phylum}_wide.csv: Wide-format taxa-by-sample table of relative abundance at different taxonomic levels</b>
DOI: 10.25704/k0pt-jg68
title: Number of underway vessels in the Western Mediterranean (2016/01-2020/06)

description: Terrestrial AIS (T-AIS) data from the Western Mediterranean (map inset Fig 5a) were collated by the Balearic Islands Coastal and Forecasting System (SOCIB) using a real-time operational system connected to a web-service provided by MarineTraffic (https://www.marinetraffic.com/). The database used in this study contained AIS data from 1st January 2016 until 30th June 2020 at 5 minute intervals (&gt; 545 million AIS messages). In addition to the vessel tracks, the database also included information associated with each vessel, such as the vessel type or length. A first pre-processing of the raw data included the removal of duplicates, invalid identification numbers (i.e. Maritime Mobile Service Identity -MMSI- codes without 9 digits) and codes outside the correct numerical range (i.e. MMSI codes with first digits between 2 and 7 are those intended for individual ships). In order to address inconsistencies in the vessel and MMSI combinations (e.g., changes of MMSI across years), we selected the more frequent combination of MMSI and vessel characteristics (e.g. vessel name and vessel type) for each calendar year. We used a similar vessel categorization as the S-AIS dataset, but were able to derive a sixth category from the AIS metadata, separating “recreational” vessels from “other” vessels. Therefore, vessels were classified into six categories: cargo, tanker, passenger (included high speed crafts and passenger vessels), fishing, recreational (included sailing vessels and pleasure crafts), and others (included all other ship types). We excluded ship type codes 20 to 29 (i.e. wing-in-ground-effect and search and rescue aircraft), as well as codes that had an invalid value (i.e. empty or null) or the value was not listed in the previous type codes. We calculated the number of vessels per day taking into account only those that were underway, thus removing moored vessels inside ports that were inactive. T-AIS coverage was not homogenous in the study area (Holmes et al. 2020) due to a non-uniformly distribution of antennas (i.e. few antennas in north Africa, see www.marinetraffic.com). Based on a previous analysis of the AIS coverage (Holmes et al 2020), we filtered vessels within the coastal zone (44.4 km, ~24 nautical miles) of EU countries (i.e. a total area of 164,318.2 km2 comprised by Spain, France and Italy), thus reducing potential bias due to temporal gaps in signal reception.
DOI: 10.6084/m9.figshare.12382667
title: LUCAS 2018 Copernicus

description: The data published are distributed along with the ESSD manuscript entitled "LUCAS Copernicus 2018: Earth Observation relevant in-situ data on land cover and use throughout the European Union"by Raphaël d’Andrimont, Astrid Verhegghen, Michele Meroni, Guido Lemoine, Peter Strobl, Beatrice Eiselt, Momchil Yordanov, Laura Martinez-Sanchez and Marijn van der Velde.<br>----<br>The repository contains the following files:<br><br> LUCAS_2018_Copernicus_ReadMe.txt : short description of the data repository LUCAS_2018_Copernicus.zip : compressed files containing the dataset LUCAS_2018_Copernicus_attributes.csv : CSV containing the 120 variables including the "POINT_ID" LUCAS_2018_Copernicus_polygons.shp : Shapefile of polygons with the "POINT_ID" attribute LUCAS_2018_Copernicus_polygons.dbf LUCAS_2018_Copernicus_polygons.shx LUCAS_2018_Copernicus_polygons.prj<br> ESSD_create_LUCAS_polygons.Rmd : R markdown script used to generate the data ESSD_manuscript_Tables_and_Figures.Rmd : R markdown script used to generate the figures and tables of the manuscript <br>
DOI: 10.5281/zenodo.4522437
title: Observation of a non-Hermitian phase transition in an optical quantum gas

description: This repository contains the data presented in the manuscript titled Observation of a Non-Hermitian Phase Transition in an Optical Quantum Gas (arxiv identifier: arXiv:2010.15829v1). Main text figures: Fig_1b.xlsx Fig_1c g2data_left.xlsx Fig_1c g2data_right.xlsx Fig_3a.xlsx Fig_3b.xlsx Fig_3c.xlsx Fig_4a.xlsx Fig_4b left.xlsx Fig_4b right.xlsx
DOI: 10.5281/zenodo.4522436
title: Observation of a non-Hermitian phase transition in an optical quantum gas

description: This repository contains the data presented in the manuscript titled Observation of a Non-Hermitian Phase Transition in an Optical Quantum Gas (arxiv identifier: arXiv:2010.15829v1). Main text figures: Fig_1b.xlsx Fig_1c g2data_left.xlsx Fig_1c g2data_right.xlsx Fig_3a.xlsx Fig_3b.xlsx Fig_3c.xlsx Fig_4a.xlsx Fig_4b left.xlsx Fig_4b right.xlsx
DOI: 10.25704/z5y2-qpye
title: ALBOREX 2014 - PERSEUS

description: A multi-platform synoptic experiment (ALBOREX) was conducted in 2014 in the eastern Alboran Sea in the frame of EU funded FP7 PERSEUS project. The final goal was to monitor and establish the vertical exchanges associated with mesoscale and sub-mesoscale (e.g fronts, meanders, eddies and filaments) and their contribution to upper-ocean interior exchanges.
DOI: 10.15468/jspg8b
title: A new species of Pseudocalea LUZE from Afghanistan (Coleoptera: Staphylinidae: Aleocharinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Assing, V. (2007): A new species of Pseudocalea LUZE from Afghanistan (Coleoptera: Staphylinidae: Aleocharinae). Linzer biologische Beiträge 39 (1): 11-14, DOI: http://doi.org/10.5281/zenodo.4523338
DOI: 10.15468/yf4m3g
title: On the genus Pseudobium MULSANT & REY II. A new species from Pakistan and additional records (Insecta: Coleoptera: Staphylinidae: Paederinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Assing, V. (2007): On the genus Pseudobium MULSANT & REY II. A new species from Pakistan and additional records (Insecta: Coleoptera: Staphylinidae: Paederinae). Linzer biologische Beiträge 39 (1): 15-21, DOI: http://doi.org/10.5281/zenodo.4523442
DOI: 10.15468/re4gh7
title: Review of Palaearctic Autalia VII. A new species from Yunnan, China (Coleoptera: Staphylinidae: Aleocharinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Assing, V. (2008): Review of Palaearctic Autalia VII. A new species from Yunnan, China (Coleoptera: Staphylinidae: Aleocharinae). Linzer biologische Beiträge 40 (1): 247-250, DOI: http://doi.org/10.5281/zenodo.4523490
DOI: 10.5281/zenodo.4506248
title: Reconstructing Ocean Surface Current Combining Altimetry and Future Spaceborne Doppler Data study : data repository

description: This folder contains all the data used to realize the following study:<br> "Reconstructing Ocean Surface Current Combining Altimetry and Future Spaceborne Doppler Data" [Paper #2020JC016560RR] The directory 'Synthetic_observations' contains all input data from the Altimetry simulator and from the Skimulator, organized as netcdf4 files (1 file par satellite pass). The directory 'Mapped_fields' contains the gridded reconstructed currents. The 3 main experiments are provided, the file 'WW3_NATL60_8b60az_L2D.nc' contains the 'basic current mapping' reconstructions, the file 'gf60_diags04_analysis.nc' contains the 'improved current mapping' with Skimulator data only and the file 'gf60_diags10_analysis.nc' contains the 'improved current mapping' with both Altimetry and Skimulator data.
DOI: 10.5281/zenodo.4506247
title: Reconstructing Ocean Surface Current Combining Altimetry and Future Spaceborne Doppler Data study : data repository

description: This folder contains all the data used to realize the following study:<br> "Reconstructing Ocean Surface Current Combining Altimetry and Future Spaceborne Doppler Data" [Paper #2020JC016560RR] The directory 'Synthetic_observations' contains all input data from the Altimetry simulator and from the Skimulator, organized as netcdf4 files (1 file par satellite pass). The directory 'Mapped_fields' contains the gridded reconstructed currents. The 3 main experiments are provided, the file 'WW3_NATL60_8b60az_L2D.nc' contains the 'basic current mapping' reconstructions, the file 'gf60_diags04_analysis.nc' contains the 'improved current mapping' with Skimulator data only and the file 'gf60_diags10_analysis.nc' contains the 'improved current mapping' with both Altimetry and Skimulator data.
DOI: 10.25646/7985
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.15468/48qd8k
title: Seven new species and additional records of Palaearctic Leptusa, primarily from Yunnan, China (Coleoptera: Staphylinidae: Aleocharinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Assing, V. (2008): Seven new species and additional records of Palaearctic Leptusa, primarily from Yunnan, China (Coleoptera: Staphylinidae: Aleocharinae). Linzer biologische Beiträge 40 (1): 251-273, DOI: http://doi.org/10.5281/zenodo.4523588
DOI: 10.5281/zenodo.4523881
title: Data and code for gene expression analysis in preprint "Consequences of pharmacophagous uptake from plants and conspecifics in a sawfly elucidated using chemical and molecular techniques"

description: Data and code for gene expression analysis in preprint "Consequences of pharmacophagous uptake from plants and conspecifics in a sawfly elucidated using chemical and molecular techniques". Code is fully annotated with the use of each data set and files specified at different points in the analysis, except for star.genes.results files, which are the files in specified folder "Genes_Clero - sample 18". renv lockfile also included for version control, although package versions included in full in preprint. Raw read information: BioProject ID = PRJNA700827. BioSample accession numbers = SAMN17839831-48 (http://www.ncbi.nlm.nih.gov/bioproject/700827)