cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1198475.v1
title: Ecology Lab 3

description: This lab was conducted in the grasslands at York University. The quadrant was placed around the grasslands at different random locations. Withing each quadrant, the different number of insects was eyeballed and listed using their Recongizable Taxonimic Unit. Also the same number of each insect was counted and listed. Each quardrant was observed for a duration of 30 seconds.
DOI: 10.6084/m9.figshare.1198478.v1
title: Ecology Lab 3

description: This experiment was conducted on Thursday October 2nd, 2014 at the Danby grassland and woodlot in York University’s Keele Campus. The temperature was 19 oC. The experiment began by randomly placing 10 bowls, separated into white, blue, and yellow colours, approximately 1 meter apart in each field. Each bowl was filled with soapy water to attract and trap insects. The bowls were left for 2 hours and 15 minutes to collect insects. The bowls were then collected and the number and type of insect contained in each one was recorded. the reason for collecting data was to estimate the abundance and diversity of flying insects.
DOI: 10.6084/m9.figshare.1198456
title: PCR and mapping duplicate rate in NGS

description: Theory on PCR and mapping duplicate rate.
DOI: 10.6084/m9.figshare.1198455
title: map_26.gephi

description: This is a dataset realted to the european project "EMAPS"
DOI: 10.6084/m9.figshare.1198456.v1
title: PCR and mapping duplicate rate in NGS

description: Theory on PCR and mapping duplicate rate.
DOI: 10.6084/m9.figshare.1198453
title: Sweep net data set

description: 10 transects (10meters, 40 seconds) were placed on the grassfeild and walked with a sweep net. Data recorded based on number and kind of insects captured.
DOI: 10.6084/m9.figshare.1198449
title: Quadrant Insect Analysis

description: The experiment was done at two locations at the York University Keele Campus. At first the experiment was done in the woodland, at Danby park. An area of interest of soil was to be slightly disturbed by foot and the quadrant was to be placed on that area. The area inside the quadrant was to be observed for the duration of one minute. The number and taxonomic name of the insects were then to be recorded. this process was repeated 9 more times for a total of 10 trials. In the Woodland, the area of interest was to be disturbed by flattening grass. The quadrant was then layed, and the number and indentity of the insects were to be observed and recorded. This was done for a total of 10 trials.
DOI: 10.6084/m9.figshare.1198455.v1
title: map_26.gephi

description: This is a dataset realted to the european project "EMAPS"
DOI: 10.6084/m9.figshare.1198449.v1
title: Quadrant Insect Analysis

description: The experiment was done at two locations at the York University Keele Campus. At first the experiment was done in the woodland, at Danby park. An area of interest of soil was to be slightly disturbed by foot and the quadrant was to be placed on that area. The area inside the quadrant was to be observed for the duration of one minute. The number and taxonomic name of the insects were then to be recorded. this process was repeated 9 more times for a total of 10 trials. In the Woodland, the area of interest was to be disturbed by flattening grass. The quadrant was then layed, and the number and indentity of the insects were to be observed and recorded. This was done for a total of 10 trials.
DOI: 10.6084/m9.figshare.1198447
title: Table of Scale Factor at Key Times (from Planck 2013)

description: Table of Scale Factor at Key Times (from Planck 2013), Time, Description of why time interesting, scale factor, horizon distance and redshift for each time.
DOI: 10.6084/m9.figshare.1198453.v1
title: Sweep net data set

description: 10 transects (10meters, 40 seconds) were placed on the grassfeild and walked with a sweep net. Data recorded based on number and kind of insects captured.
DOI: 10.6084/m9.figshare.1198447.v1
title: Table of Scale Factor at Key Times (from Planck 2013)

description: Table of Scale Factor at Key Times (from Planck 2013), Time, Description of why time interesting, scale factor, horizon distance and redshift for each time.
DOI: 10.6084/m9.figshare.1198429
title: Bicycle Parameters

description: This is a collection of raw and processed physical parameter data for a set of bicycles presented in: Moore, J. K. Human Control of a Bicycle, UC Davis, 2012. See the BicycleParameters software package (https://pypi.python.org/pypi/BicycleParameters) for processing and visualization methods. This material is partially based upon work supported by the National Science Foundation under Grant No. 0928339. Any opinions, findings, and conclusions or<br>recommendations expressed in this material are those of the authors and do not necessarily reflect the views of the National Science Foundation.
DOI: 10.6084/m9.figshare.1198427
title: He-(ortho) H2 (v=4 initial)

description: Rate coefficients (in units of cm3/s) for ro-vibrational transitions between vibrational-rotational levels of para-H2 in collisions with He at different values of the translational temperature (K). H2 in v=3 initial state. Each table is for particular values of (v initial, J initial) and (v final, J final). See Balakrishnan et al. ApJ 524, (1999) 1122, Table 7. doi:10.1086/307846
DOI: 10.6084/m9.figshare.1198434.v1
title: Investigating Research Agenda Appendix B

description: 2014 State of PopPov Appendix B
DOI: 10.6084/m9.figshare.1198427.v1
title: He-(ortho) H2 (v=4 initial)

description: Rate coefficients (in units of cm3/s) for ro-vibrational transitions between vibrational-rotational levels of para-H2 in collisions with He at different values of the translational temperature (K). H2 in v=3 initial state. Each table is for particular values of (v initial, J initial) and (v final, J final). See Balakrishnan et al. ApJ 524, (1999) 1122, Table 7. doi:10.1086/307846
DOI: 10.6084/m9.figshare.1198398
title: He-(para)H2 (v=4 initial)

description: Rate coefficients (in units of cm3/s) for ro-vibrational transitions between vibrational-rotational levels of para-H2 in collisions with He at different values of the translational temperature (K). H2 in v=3 initial state. Each table is for particular values of (v initial, J initial) and (v final, J final). See Balakrishnan et al. ApJ 524, (1999) 1122, Table 6. doi:10.1086/307846
DOI: 10.6084/m9.figshare.1198429.v1
title: Bicycle Parameters

description: This is a collection of raw and processed physical parameter data for a set of bicycles presented in: Moore, J. K. Human Control of a Bicycle, UC Davis, 2012. See the BicycleParameters software package (https://pypi.python.org/pypi/BicycleParameters) for processing and visualization methods. This material is partially based upon work supported by the National Science Foundation under Grant No. 0928339. Any opinions, findings, and conclusions or<br>recommendations expressed in this material are those of the authors and do not necessarily reflect the views of the National Science Foundation.
DOI: 10.6084/m9.figshare.1198368
title: He-(ortho)H2 (v=3 initial)

description: Rate coefficients (in units of cm3/s) for ro-vibrational transitions between vibrational-rotational levels of para-H2 in collisions with He at different values of the translational temperature (K). H2 in v=3 initial state. Each table is for particular values of (v initial, J initial) and (v final, J final). See Balakrishnan et al. ApJ 524, (1999) 1122, Table 5. doi:10.1086/307846
DOI: 10.6084/m9.figshare.1198398.v1
title: He-(para)H2 (v=4 initial)

description: Rate coefficients (in units of cm3/s) for ro-vibrational transitions between vibrational-rotational levels of para-H2 in collisions with He at different values of the translational temperature (K). H2 in v=3 initial state. Each table is for particular values of (v initial, J initial) and (v final, J final). See Balakrishnan et al. ApJ 524, (1999) 1122, Table 6. doi:10.1086/307846
DOI: 10.6084/m9.figshare.1198340
title: third ecology lab: sweeping nets

description: There were four parts to this experiment. My part was the sweeping nets. This was done on the grassland. The transect tape was layed on the grassland which extended all the way to 25 meters. The tape was used as my starting point as I walked across the grassland with the net in hand sweeping forcefully from side to side. After the sweeping was finished I had to hold the net from the middle so insects can escape. The net was layed carefully on the ground and slowly my partners and I started to look inside the net and see what I caught. The number of the different types of insects that was caught was then recorded on the chart. This process was repeat ten times at different distances which was measured on meters using the transcet tape.
DOI: 10.6084/m9.figshare.1198368.v1
title: He-(ortho)H2 (v=3 initial)

description: Rate coefficients (in units of cm3/s) for ro-vibrational transitions between vibrational-rotational levels of para-H2 in collisions with He at different values of the translational temperature (K). H2 in v=3 initial state. Each table is for particular values of (v initial, J initial) and (v final, J final). See Balakrishnan et al. ApJ 524, (1999) 1122, Table 5. doi:10.1086/307846
DOI: 10.6084/m9.figshare.1198307
title: He-(ortho)H2, (v=2 initial state)

description: Rate coefficients (in units of cm3/s) for ro-vibrational transitions between vibrational-rotational levels of para-H2 in collisions with He at different values of the translational temperature (K). H2 in v=2 initial state. Each table is for particular values of (v initial, J initial) and (v final, J final). See Balakrishnan et al. ApJ 524, (1999) 1122, Table 3. doi:10.1086/307846
DOI: 10.6084/m9.figshare.1198308
title: WFSE Newsletters 2012 - 2014

description: This is the Newsletter of IUFRO’s Special Project World Forests, Society and Environment (IUFRO WFSE). It is meant for sharing the latest news and information about the Special project’s current activities with IUFRO officeholders, member organizations, WFSE partners, donors and the members of the WFSE-network from research organisations and universities around the world.
DOI: 10.6084/m9.figshare.1198336
title: He-(para)H2 (v=3 initial)

description: Rate coefficients (in units of cm3/s) for ro-vibrational transitions between vibrational-rotational levels of para-H2 in collisions with He at different values of the translational temperature (K). H2 in v=3 initial state. Each table is for particular values of (v initial, J initial) and (v final, J final). See Balakrishnan et al. ApJ 524, (1999) 1122, Table 4. doi:10.1086/307846
DOI: 10.6084/m9.figshare.1198336.v1
title: He-(para)H2 (v=3 initial)

description: Rate coefficients (in units of cm3/s) for ro-vibrational transitions between vibrational-rotational levels of para-H2 in collisions with He at different values of the translational temperature (K). H2 in v=3 initial state. Each table is for particular values of (v initial, J initial) and (v final, J final). See Balakrishnan et al. ApJ 524, (1999) 1122, Table 4. doi:10.1086/307846
DOI: 10.6084/m9.figshare.1198340.v2
title: third ecology lab: sweeping nets

description: There were four parts to this experiment. My part was the sweeping nets. This was done on the grassland. The transect tape was layed on the grassland which extended all the way to 25 meters. The tape was used as my starting point as I walked across the grassland with the net in hand sweeping forcefully from side to side. After the sweeping was finished I had to hold the net from the middle so insects can escape. The net was layed carefully on the ground and slowly my partners and I started to look inside the net and see what I caught. The number of the different types of insects that was caught was then recorded on the chart. This process was repeat ten times at different distances which was measured on meters using the transcet tape.
DOI: 10.6084/m9.figshare.1198307.v1
title: He-(ortho)H2, (v=2 initial state)

description: Rate coefficients (in units of cm3/s) for ro-vibrational transitions between vibrational-rotational levels of para-H2 in collisions with He at different values of the translational temperature (K). H2 in v=2 initial state. Each table is for particular values of (v initial, J initial) and (v final, J final). See Balakrishnan et al. ApJ 524, (1999) 1122, Table 3. doi:10.1086/307846
DOI: 10.6084/m9.figshare.1198308.v2
title: WFSE Newsletters 2012 - 2014

description: This is the Newsletter of IUFRO’s Special Project World Forests, Society and Environment (IUFRO WFSE). It is meant for sharing the latest news and information about the Special project’s current activities with IUFRO officeholders, member organizations, WFSE partners, donors and the members of the WFSE-network from research organisations and universities around the world.
DOI: 10.6084/m9.figshare.1198340.v1
title: Second ecology lab: sweeping nets

description: There were four parts to this experiment. My part was the sweeping nets. This was done on the grassland. The transect tape was layed on the grassland which extended all the way to 25 meters. The tape was used as my starting point as I walked across the grassland with the net in hand sweeping forcefully from side to side. After the sweeping was finished I had to hold the net from the middle so insects can escape. The net was layed carefully on the ground and slowly my partners and I started to look inside the net and see what I caught. The number of the different types of insects that was caught was then recorded on the chart. This process was repeat ten times at different distances which was measured on meters using the transcet tape.
DOI: 10.6084/m9.figshare.1198269
title: A contrast of shrub-open microclimatic conditions Peru

description: A coastal desert plant community at Atiquipa, southern Peru during the growing season of 2011 between Aug 17 and Oct 4 was instrumented to record microenvironmental conditions. HOBO U-23 Pro-V2 (Temperature and Relative Humidity) and HOBO UA-002-64 (Light intensity and temperature) loggers were placed at the soil level under the canopy (within 0.5 m of the main stem) of Caesalpinia spinosa (shrub-tree) and in open adjacent areas (1-2 away from the dripline of C. spinosa). This information was recorded every 15 min. This dataset was used in Sotomayor et al. (2014), DOI: 10.1111/aec.12144.
DOI: 10.6084/m9.figshare.1198270
title: Program on World Forests, Society and Environment (IUFRO-WFSE): Policy Briefs

description: IUFRO WFSE is an open, independent network of scientists and practitioners steered by 10 international research organisations, involving over 100 researchers from throughout the world. It supports sustainable natural resources management, sustainable development and inclusive growth as well as related policy processes, focusing principally on two main efforts: 1) collating, critically analysing, and synthesising existing scientific knowledge on topics of international relevance in the forest, society and environment interface in order to draw out important lessons learned and recommendations and 2) undertaking new research to fill in crucial gaps in existing knowledge. WFSE addresses these topics in a cross-sectoral, holistic and interdisciplinary fashion, encouraging innovative approaches and anticipating conditions that will influence future forest-related development at different scales, from local to global.
DOI: 10.6084/m9.figshare.1198308.v1
title: WFSE Newsletters 2012 - 2014

description: This is the Newsletter of IUFRO’s Special Project World Forests, Society and Environment (IUFRO WFSE). It is meant for sharing the latest news and information about the Special project’s current activities with IUFRO officeholders, member organizations, WFSE partners, donors and the members of the WFSE-network from research organisations and universities around the world.
DOI: 10.6084/m9.figshare.1198267
title: Ecology Lab: Pan trap data set

description: Observations and data were collected at York University Keele campus in the grasslands and in the Boyers woodlot. Nine solo bowls filled with soapy water was placed in the grassland and nine placed in the woodlot in a transect approximately ½ a meter apart in distance. The solo bowls varied in color, blue, yellow and white bowls were placed at both sites to account for any influence the color of the bowl might have on the insects. In both sites the bowls were placed in areas near trees that were dense and very close together in proximity. The solo bowls were left undisturbed and touched for approximately three hours and the number of insects in each bowl was observed.
DOI: 10.6084/m9.figshare.1198270.v2
title: Program on World Forests, Society and Environment (IUFRO-WFSE): Policy Briefs

description: IUFRO WFSE is an open, independent network of scientists and practitioners steered by 10 international research organisations, involving over 100 researchers from throughout the world. It supports sustainable natural resources management, sustainable development and inclusive growth as well as related policy processes, focusing principally on two main efforts: 1) collating, critically analysing, and synthesising existing scientific knowledge on topics of international relevance in the forest, society and environment interface in order to draw out important lessons learned and recommendations and 2) undertaking new research to fill in crucial gaps in existing knowledge. WFSE addresses these topics in a cross-sectoral, holistic and interdisciplinary fashion, encouraging innovative approaches and anticipating conditions that will influence future forest-related development at different scales, from local to global.
DOI: 10.6084/m9.figshare.1198267.v1
title: Ecology Lab: Pan trap data set

description: Observations and data were collected at York University Keele campus in the grasslands and in the Boyers woodlot. Nine solo bowls filled with soapy water was placed in the grassland and nine placed in the woodlot in a transect approximately ½ a meter apart in distance. The solo bowls varied in color, blue, yellow and white bowls were placed at both sites to account for any influence the color of the bowl might have on the insects. In both sites the bowls were placed in areas near trees that were dense and very close together in proximity. The solo bowls were left undisturbed and touched for approximately three hours and the number of insects in each bowl was observed.
DOI: 10.6084/m9.figshare.1198270.v1
title: Program on World Forests, Society and Environment (IUFRO-WFSE): Policy Briefs

description: IUFRO WFSE is an open, independent network of scientists and practitioners steered by 10 international research organisations, involving over 100 researchers from throughout the world. It supports sustainable natural resources management, sustainable development and inclusive growth as well as related policy processes, focusing principally on two main efforts: 1) collating, critically analysing, and synthesising existing scientific knowledge on topics of international relevance in the forest, society and environment interface in order to draw out important lessons learned and recommendations and 2) undertaking new research to fill in crucial gaps in existing knowledge. WFSE addresses these topics in a cross-sectoral, holistic and interdisciplinary fashion, encouraging innovative approaches and anticipating conditions that will influence future forest-related development at different scales, from local to global.
DOI: 10.6084/m9.figshare.1197835
title: A phylogeny of the birds of New Zealand

description: This repository contains supplementary sata associated with this manuscript: Estimating phylogenies for species assemblages: a complete phylogeny for the past and present native birds of New Zealand<br>Lanfear R and Bromham L (2011) Molecular Phylogenetics and Evolution 61(3):958–963<br>http://dx.doi.org/10.1016/j.ympev.2011.07.018 There are four files in this collection: <strong>GeneFinder.py</strong><br>Python script to search GenBank for sequences that match taxonIDs in a list.<br>Instructions on use are in the script itself, open the script in a text editor to read them. <strong>SupplementaryData.xls</strong><br>Contains the species list, taxonomy, the TaxonIDs used for each species, whether the TaxonID is for<br>the NZ species or a substitute taxon, GenBank accession numbers for each sequence used in the supermatrix<br>(a -1 indicates that a no data were available for that taxon and that gene), and full details of all<br>contsraints used ('1' indicates that a given taxon was included in a constraint). <strong>MrBayes_inputfile.nex</strong><br>An example input file for the MrBayes analysis. Seven of these were run independently.<br>This file also contains the alignments for each gene. <strong>MrBayes_posterior_sample_trees.nex.zip</strong><br>The full posterior sample of 133,000 trees from the analysis.<br>These trees exclude 2,000,000 generations of burnin from each run. <strong>50percent_majorityrule_tree.nex</strong><br>The 50% majorityrule tree that summarises the full posterior sample of 133,000 trees. This<br>was calculated by loading each run into MrBayes, and summarising the trees using the 'sumt' command.
DOI: 10.6084/m9.figshare.1197835.v1
title: A phylogeny of the birds of New Zealand

description: This repository contains supplementary sata associated with this manuscript: Estimating phylogenies for species assemblages: a complete phylogeny for the past and present native birds of New Zealand<br>Lanfear R and Bromham L (2011) Molecular Phylogenetics and Evolution 61(3):958–963<br>http://dx.doi.org/10.1016/j.ympev.2011.07.018 There are four files in this collection: <strong>GeneFinder.py</strong><br>Python script to search GenBank for sequences that match taxonIDs in a list.<br>Instructions on use are in the script itself, open the script in a text editor to read them. <strong>SupplementaryData.xls</strong><br>Contains the species list, taxonomy, the TaxonIDs used for each species, whether the TaxonID is for<br>the NZ species or a substitute taxon, GenBank accession numbers for each sequence used in the supermatrix<br>(a -1 indicates that a no data were available for that taxon and that gene), and full details of all<br>contsraints used ('1' indicates that a given taxon was included in a constraint). <strong>MrBayes_inputfile.nex</strong><br>An example input file for the MrBayes analysis. Seven of these were run independently.<br>This file also contains the alignments for each gene. <strong>MrBayes_posterior_sample_trees.nex.zip</strong><br>The full posterior sample of 133,000 trees from the analysis.<br>These trees exclude 2,000,000 generations of burnin from each run. <strong>50percent_majorityrule_tree.nex</strong><br>The 50% majorityrule tree that summarises the full posterior sample of 133,000 trees. This<br>was calculated by loading each run into MrBayes, and summarising the trees using the 'sumt' command.
DOI: 10.6084/m9.figshare.1197236
title: First timetree of Sphyraenidae (Percomorpha) reveals a Middle Eocene crown age and an Oligo–Miocene radiation of barracudas

description: The 27 extant species of the family Sphyraenidae represent one of the major groups of piscivorous teleost fishes in tropical and subtropical marine waters. In spite of their ecological importance, currently, no phylogenetic hypothesis is available for this group, and we do not know the tempo of evolution of this clade. In this study, we used a supermatrix approach to assemble a dataset of three mitochondrial loci for 20 sphyraenid species, and time-calibrated this new phylogeny. Our study supports the existence of three main groups of barracudas, which we labelled the “<i>S. barracuda</i>” group, the “<i>S. obtusata</i>” group and the “<i>S. sphyraena</i>” group. The timetree indicates a Late Paleocene age (~57 Ma) for the origin of the groups, and a Middle Eocene (~45 Ma) timing for the beginning of the radiation of extant lineages. Most extant species appear to belong to phylogenetic lineages dating to the Miocene (~5 to 23 Ma). Our study reveals multiple shifts between coral reef-associated and non-reef (usually more pelagic) habitats, as well as two independent origins of large body size within this group.