cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28706669.v1
title: Evaluating Cognitive Behavioural Therapy Outcomes for Depression and Anxiety:Adapting the Improving Access to Psychological Therapies Model for Japan

description: Background: The Improving Access to Psychological Therapies (IAPT) programme launched in 2008 in the United Kingdom has improved access to cost-effective cognitive behavioural therapy (CBT) for treating depression and anxiety. Inspired by this model, a two-year training course was launched in Japan to train therapists to practise CBT. In this study, we analysed the patient data collected from this programme.Methods: We collected observational data from 31 trained therapists who delivered high-intensity face-to-face CBT sessions. A total of 290 patients participated in the study; 241 met the inclusion criteria. Depression and anxiety were assessed using the Japanese versions of the Patient Health Questionnaire-9 (PHQ-9) and Generalized Anxiety Disorder-7 questionnaire (GAD-7), respectively and statistical analyses were performed to compare the pre- and post-treatment scores. Reliable improvement and recovery rates were assessed based on established thresholds.Results: Before the treatment, the mean PHQ-9 score was 11.5 (SD = 6.4) and the mean GAD-7 score was 10.0 (SD = 5.2). No significant differences were found between male and female participants. The outcome classification showed that before the treatment, 32.4% of the participants suffered from severe depression (PHQ-9 ≥ 15) and 20.3% from severe anxiety (GAD-7 ≥ 15). The statistical analysis confirmed a significant improvement in depression and anxiety symptoms after the treatment (p &lt; .05): 168 participants (69.7%) showed reliable improvement and 58 participants (35%) showed reliable recovery.Conclusion: The IAPT-adapted CBT model in Japan is feasible despite differences in the healthcare system; however, further consideration is needed to improve the rate of reliable recovery. Future studies should improve implementation strategies, expand the patient database, and evaluate the long-term treatment effects.
DOI: 10.6084/m9.figshare.7898591.v1
title: Comparative study of percutaneous nephrolithotomy performed in the traditional prone position and in three different supine positions

description: ABSTRACT Purpose: To compare the outcomes of percutaneous nephrolithotomy (PCNL) performed in the prone position (PRON) and in three variations of the supine position. Materials and Methods: We performed a retrospective analysis of patients that underwent PCNL at our institution from June 2011 to October 2016 in PRON and in three variations of the supine position: complete supine (COMPSUP), original Valdivia (VALD), and Galdakao - modified Valdivia (GALD). All patients had a complete pre - operative evaluation, including computed tomography (CT). Success was defined as the absence of residual fragments larger than 4 mm on the first post - operative day CT. Results: We analyzed 393 PCNLs: 100 in COMPSUP, 94 in VALD, 100 in GALD, and 99 in PRON. The overall success rate was 50.9% and was similar among groups (p = 0.428). There were no differences between groups in the number of punctures, stone - free rate, frequency of blood transfusions, drop in hemoglobin level, length of hospital stay, and severe complications (Clavien ≥ 3). COMPSUP had a significantly lower operative time than the other positions. COMPSUP had lower fluoroscopy time than VALD. Conclusion: Patient positioning in PCNL does not seem to impact the rates of success or severe complications. However, COMPSUP is associated with a shorter surgical time than the other positions.
DOI: 10.17632/3hjcyghxyk
title: Fractionation of rare earth elements in silicate-sulfate magmatic-hydrothermal systems: Evidence from unique REE-Si-S-O phases

description: This study investigates how rare earth element (REE) mobilization and precipitation occur under hydrothermal conditions, with a focus on their interaction with silicates and sulfates. The hypothesis is that specific mineralogical and experimental conditions influence the formation and composition of REE products.
The dataset comprises four tables, provided as separate sheets in a single Excel file. Each table represents key experimental data and findings:
Table S1: Detailed experimental setup and results for synthetic fluid inclusion experiments. Includes temperature, pressure, starting material compositions, and observed inclusions formed under controlled conditions.
Table S2: Experimental details and results of hydrothermal reactions between silicates and REE sulfates. Lists reaction conditions (temperature, pressure, duration), silicates, REE sulfate types, and resulting mineralogical changes.
Table S3: Average EPMA (Electron Probe Micro-Analysis) compositions of REE-bearing products in quartz (Q), K-feldspar (K), and diopside (D)-bearing hydrothermal experiments. Provides elemental compositions, calculated proportions of REE phases, and insights into preferential REE incorporation.
Table S4: Raman spectroscopy peaks of representative REE products in quartz (Q)-, K-feldspar (K)-, and diopside (D)-bearing hydrothermal experiments, aiding in phase identification and structural analysis.
DOI: 10.6084/m9.figshare.5128786.v1
title: Supplementary Material for: Pretreatment Pokemon Level as a Predictor of Response to Cisplatin and Paclitaxel in Patients with Unresectable Non-Small Cell Lung Cancer

description: <b><i>Background:</i></b> We firstly investigated the expression of Pokemon in patients with non-small cell lung cancer (NSCLC), then characterized the role of Pokemon in evaluating the response to combined cisplatin and paclitaxel chemotherapy and prognosis. <b><i>Patients and Methods:</i></b> In this study, 61 patients with previously untreated locally advanced or metastatic NSCLC were treated with a combination chemotherapy comprising cisplatin and paclitaxel. The correlation between serum expression of Pokemon and effectiveness of chemotherapy was assessed. <b><i>Results:</i></b> The expression level of Pokemon in NSCLC patients was higher than that in healthy controls (p = 0.000), and was correlated with tumor size and TNM stage (p &lt; 0.05). Kaplan-Meier analysis and Cox proportional hazard model demonstrated a poor response and shorter survival time in patients with pretreatment Pokemon levels in excess of 135.09 ng/ml compared to those with Pokemon levels below 135.09 ng/ml (p = 0.013). Pokemon ≥ 135.09 ng/ml was an independent risk factor for survival time in NSCLC patients undergoing combination chemotherapy (p = 0.018). <b><i>Conclusion:</i></b> The serum level of Pokemon correlated with efficacy of cisplatin and paclitaxel combination chemotherapy and survival time, which indicated that Pokemon may be a potentially useful biomarker for predicting treatment effectiveness of first-line chemotherapy and prognosis in NSCLC.
DOI: 10.6084/m9.figshare.13134953.v1
title: Effects of different plants extract by methanol on inhibition percentages of mycelial growth of the Fusarium species

description: <b>Effects of different plants extract by methanol on inhibition percentages of mycelial growth of the <i>Fusarium</i> species. </b>Mycelia were collected after seven days of incubation on PDA at 35°C in dark, 90 mm Petri plates were used to culture the tested fungus.
DOI: 10.6084/m9.figshare.13286942.v1
title: Flower transcriptome of three Rhytidophyllum species (Gesneriaceae)

description: Floral transcriptome of three Rhytidophyllum species (Gesneriaceae): <i>Rhytidophyllum auriculatum</i>, <i>Rhytidophyllum rupincola</i>, and <i>Rhytidophyllum vernicosum</i>. Also provided are an annotation of transcripts, list of orthologous transcripts among the transcriptome, and results of selection analyses (dn/ds) with PAML. The raw sequence data has been archived as a sequence read archive at NCBI under project PRJNA732582.
DOI: 10.6084/m9.figshare.20220093.v1
title: SciSciNet_Fields

description: SciSciNet_Fields
DOI: 10.6084/m9.figshare.26140039.v1
title: Pune wardwise relative indicator data for vulnerability parameters

description: Urban slums are hotspots of infectious diseases like COVID-19 as was seen in the waves of 2020 and 2021. One of the primary reasons why slums are disproportionately affected is their location in inaccessible and uninhabitable zones, crowded and poorly ventilated living spaces, unsanitary conditions and common facilities (water taps, common toilets, etc.). Staying at home during pandemics is hardly an option for slum dwellers as it often means giving up work and even basic necessities. This paper aims to understand the habitat vulnerabilities of slums in the two Indian megacities of Pune and Surat which were the worst hit during both waves. The study is done at the level of wards, which is the smallest administrative boundary, taking the habitat vulnerability (congestion and access to basic services). To identify the explanatory variables which increase the vulnerability of slums to infectious diseases, literature study is done on the triggering factors which affect habitat vulnerability derived from common characteristics and definitions of slum. The aim of the research is to categorize the slums into 3 levels of risk zones and map them subsequently. This study will help in formulating a model to prioritize the allocation of sparse resources in developing countries to tackle the habitat vulnerabilities of the slum dwellers especially during health emergencies of contagious diseases like COVID-19.
DOI: 10.6084/m9.figshare.5131750.v2
title: Antibiotic MICs

description: Antibiotic MICs for a systematic review
DOI: 10.6084/m9.figshare.1334231.v1
title: Highest Resolution in vivo Human Brain MRI Using Prospective Motion Correction: highest resolution MPRAGE data

description: Full dataset (384 slices) of the<br>highest resolution 3D MPRAGE scan (shown in Fig. 7).
DOI: 10.6084/m9.figshare.27917241.v1
title: 'Wanfeng' almond genome data

description: 'Wanfeng' almond genome data, Update data content version.
DOI: 10.15468/dl.2u7qu9
title: Occurrence Download

description: A dataset containing 643007 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "Year is 2004",
 "Month is April"
 ]
}

 The dataset includes 643007 records from 1182 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009398-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ssypvb
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phyllium cummingi"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017830-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cwan6w
title: Occurrence Download

description: A dataset containing 929 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Fossil",
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is 10980920-6dad-11da-ad13-b8a03c50a862"
 ]
}

 The dataset includes 929 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017831-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f2mfdc
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hesperis cilicica"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017833-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6gjuty
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Marrubium thessalum"
 ]
}

 The dataset includes 73 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017832-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mv7p4a
title: Occurrence Download

description: A dataset containing 12363063 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 12363063 records from 2125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017803-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pekb5s
title: Occurrence Download

description: A dataset containing 18790 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Specimen)",
 "TaxonKey is Zostera marina"
 ]
}

 The dataset includes 18790 records from 331 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017651-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30540677
title: “Reassessing the Inflammatory Hypothesis of Alzheimer’s Disease: A Cross-Replication Mendelian Randomization Analysis of Interleukin Pathways”

description: Neuroinflammation is increasingly recognized as a key contributor to the pathogenesis of Alzheimer’s disease (AD). Circulating cytokines, particularly interleukins (ILs), play critical roles in immune signaling pathways that regulate neuroinflammatory processes, amyloid plaque formation, and neuronal injury.Observational studies have reported associations between systemic inflammatory markers and AD risk or progression; however, these studies are limited by confounding and reverse causation.To explore the potential causal role of inflammatory pathways, this study aims to systematically evaluate the causal associations between genetically predicted circulating levels of multiple interleukins and the risk of Alzheimer’s disease using a Mendelian randomization (MR) approach.
DOI: 10.6084/m9.figshare.30540677.v1
title: “Reassessing the Inflammatory Hypothesis of Alzheimer’s Disease: A Cross-Replication Mendelian Randomization Analysis of Interleukin Pathways”

description: Neuroinflammation is increasingly recognized as a key contributor to the pathogenesis of Alzheimer’s disease (AD). Circulating cytokines, particularly interleukins (ILs), play critical roles in immune signaling pathways that regulate neuroinflammatory processes, amyloid plaque formation, and neuronal injury.Observational studies have reported associations between systemic inflammatory markers and AD risk or progression; however, these studies are limited by confounding and reverse causation.To explore the potential causal role of inflammatory pathways, this study aims to systematically evaluate the causal associations between genetically predicted circulating levels of multiple interleukins and the risk of Alzheimer’s disease using a Mendelian randomization (MR) approach.
DOI: 10.34740/kaggle/dsv/13622600
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.yrs9gd
title: Occurrence Download

description: A dataset containing 2459 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Corylus colurna",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2459 records from 134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017653-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5w2r6d
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cerebratulus velatus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017656-251025141854904/datasets/export for details.
DOI: 10.5281/zenodo.17300658
title: Data for "Increasing spatial extent and frequency of flash drought in Europe with each degree of global warming"

description: This contains the data used in the ERL paper titled "Increasing spatial extent and frequency of flash drought in Europe with each degree of global warming" , (Devvrat Yadav et al 2025 Environ. Res. Lett. 20 114046) and DOI: 10.1088/1748-9326/ae11c8. zip file contains original mHM SM for the top 30cm and the corresponding FD.
DOI: 10.5281/zenodo.17300657
title: Data for "Increasing spatial extent and frequency of flash drought in Europe with each degree of global warming"

description: This contains the data used in the ERL paper titled "Increasing spatial extent and frequency of flash drought in Europe with each degree of global warming" , (Devvrat Yadav et al 2025 Environ. Res. Lett. 20 114046) and DOI: 10.1088/1748-9326/ae11c8. zip file contains original mHM SM for the top 30cm and the corresponding FD.
DOI: 10.15468/dl.q9z72h
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((2.74564 49.32287,2.78644 49.29628,2.88194 49.29561,2.92786 49.29832,3.07014 49.37861,3.04809 49.40264,2.96897 49.40583,3.03338 49.46093,2.98805 49.49712,2.91227 49.49863,2.87796 49.468,2.87516 49.44024,2.86652 49.43989,2.83735 49.41292,2.77658 49.38399,2.74564 49.32287))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cis fissicollis"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017654-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17531815
title: Dual-View Tomographic Diffraction Microscopy

description: This record contains data products associated with the paper "Dual-View Tomographic Diffraction Microscopy" by Chacon et al. (2025) published in Optics Express (https://doi.org/10.1364/OE.575400). 

Related software, including a demo notebook for working with the data in this record, can be found on GitHub. 

The current release includes the following files:



diatom_T1_Absorption.tif: Reconstructed absorption 3D map acquired with transmission T1

diatom_T1_Indice.tif: Reconstructed refraction 3D map acquired with transmission T1

diatom_T2_Absorption.tif: Reconstructed absorption 3D map acquired with transmission T2

diatom_T2_indice.tif: Reconstructed refraction 3D map acquired with transmission T2


If you use any of the products from this record, please cite Chacon et al. (2025). [1]

References:



Chacon et al. et al. (2025). Optics Express, 33 ppXXXX-YYYY [doi]
DOI: 10.5281/zenodo.17531816
title: Dual-View Tomographic Diffraction Microscopy

description: This record contains data products associated with the paper "Dual-View Tomographic Diffraction Microscopy" by Chacon et al. (2025) published in Optics Express (https://doi.org/10.1364/OE.575400). 

Related software, including a demo notebook for working with the data in this record, can be found on GitHub. 

The current release includes the following files:



diatom_T1_Absorption.tif: Reconstructed absorption 3D map acquired with transmission T1

diatom_T1_Indice.tif: Reconstructed refraction 3D map acquired with transmission T1

diatom_T2_Absorption.tif: Reconstructed absorption 3D map acquired with transmission T2

diatom_T2_indice.tif: Reconstructed refraction 3D map acquired with transmission T2


If you use any of the products from this record, please cite Chacon et al. (2025). [1]

References:



Chacon et al. et al. (2025). Optics Express, 33 ppXXXX-YYYY [doi]
DOI: 10.5281/zenodo.16811925
title: Dataset and Code for "Biodegradable Mulching Enhances Soil Respiration via Phase-Specific Pathways"

description: This dataset contains all data, analysis scripts, and figure outputs supporting the manuscript:

Biodegradable film mulching increases soil respiration: a two-year field comparison with polyethylene film mulching in a semi-arid region of northern China[Xiaowei Liu , Dejun Wang, Mahepali Bazhabaike, Mingdon Zhou, and Tao Yin,* ][Journal / DOI – to be updated upon publication]

The repository is organized into four independent modules, each with its own README, input data, analysis code, and results. Each module can be reproduced independently.

Repository structure:





1_data_imputation – Missing data imputation for the variable RDR using linear interpolation in R (zoo::na.approx). Outputs the imputed dataset used in later analyses. Added code for missing diagnosis and sensitivity analysis.




2_origin_plots – OriginPro project files for generating violin plots and nonlinear fit plots. Includes processed input data and 12 high-resolution PDF figures.




3_mantel_analysis – R scripts and input data for Mantel test analysis of relationships between environmental factors and microbial/respiration variables. Outputs a multi-panel PDF plot (BM, PM, CT treatments). The final legend should be merged in Adobe Illustrator.




4_SEM_analysis – Structural Equation Modeling (SEM) analyses using both piecewiseSEM (frequentist) and brms (Bayesian) frameworks. Includes path coefficients, effect decomposition, R² summaries, model fit statistics (LOOIC, WAIC), and the final grouped bar figure.



Software requirements:





R (≥ 4.0.0) with packages: zoo, lme4, piecewiseSEM, brms, bayestestR, vegan, linkET, tidyverse, ggplot2, patchwork, RColorBrewer, Cairo, loo




OriginPro 2023 or later for .opju project files



Reproducibility:





Each module includes its own README with detailed instructions.




To reproduce the full workflow:





Run 1_data_imputation to generate data_imputation.csv.




Use data_imputation.csv in 4_SEM_analysis for SEM and effect decomposition.




Use 2_origin_plots and 3_mantel_analysis for figure generation.





License:The license for data and code is described in the LICENSE files in the project root or Zenodo record.