cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2dp7mz
title: CCDC 2224951: Experimental Crystal Structure Determination

description: Related Article: V.N.Zakharov, L.A.Aslanov, V.V.Chernyshev, V.A.Tafeenko|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dr36h
title: CCDC 2226736: Experimental Crystal Structure Determination

description: Related Article: V.V.Kovalev, V.A.Tafeenko|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dr38k
title: CCDC 2226738: Experimental Crystal Structure Determination

description: Related Article: V.V.Kovalev, V.A.Tafeenko|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dr3dp
title: CCDC 2226742: Experimental Crystal Structure Determination

description: Related Article: V.V.Kovalev, V.A.Tafeenko|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.21233/bdmh-b207
title: August Lake diatom dataset

description: Raw data for the August Lake diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5517/ccdc.csd.cc2m4pyf
title: CCDC 2417595: Experimental Crystal Structure Determination

description: Related Article: Kyosuke Kaneda, Takato Koideya, Hitomi Tsuda, Haruto Katakura, Haruhiko Fukaya, Takehiro Yamagishi|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m57tw
title: CCDC 2418118: Experimental Crystal Structure Determination

description: Related Article: Xi longlong|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.21233/bd2w-p471
title: Multigrade pollen dataset

description: Raw data for the Multigrade pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/918e-qj13
title: Herron Peatland testate amoebae surface sample dataset

description: Raw data for the Herron Peatland testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/kgn3-4382
title: Dosuncheon ostracode surface sample dataset

description: Raw data for the Dosuncheon ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/r3zq-4f35
title: Bristle Creek ostracode surface sample dataset

description: Raw data for the Bristle Creek ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.15364993
title: Supplementary Data for: MicroFinder: Conserved gene-set mapping and assembly ordering for manual curation of bird microchromosomes

description: Orthogroups, species tree and the MicroFinder protein set

Files listed below are found in the "./OrthoFinder_results_and_MicroFinder_protein_set/" subdirectory. Sample IDs used throughout correspond to those given in Supplementarty Table 1 of the main manuscript. 

SubdIrectory containing proteomes for each species included in the OrthoFinder analysis: ./input_proteomes/

SubdIrectory containing annotation GFF files for each species included in the OrthoFinder analysis: ./annotations/

OrthoFinder orthogroups: Orthogroups.txt

Per species gene counts per orthogroup annotated with whether each familiy was identied by KinFin as a broadly conserved "fuzzy" orothogroup and whether the orthogroup was included in the MicroFinder protein set: Orthogroups.GeneCount.KinFin_MicroFinder_annotated.tsv

SubdIrectory containing multiple sequence alignments for all orthogroups: ./MultipleSequenceAlignments_all_orthogroups/

SubdIrectory containing multiple sequence alignments for conserved single copy orthogroups used for IQTree species tree inference (FASTA headers have been simplified to just contain the species ID): ./species_tree_alignments/

IQtree species tree inference run details: species_tree.concat.iqtree

IQtree species tree: species_tree.concat.nwk

IQTree best fitting models and parititioning scheme: IQTree.concat.best_model.nex

The MicroFinder protein set used in the MicroFinder pipeline: MicroFinder_prot_set.fa

Re-curated bird genomes

The "./Recuration/" subdirectory contains files used for the MicroFinder-enabled genome assembly curation of 12 previously released bird genomes listed in Supplementary Table 4 of the main manuscript.

Subfolders in this directory are named by the TOL ID of each species and contain:

PretextView HI-C contact map of the original genome assembly.

PretextView savestate showing changes made during re-curation. 

AGP file summarising changes made to the orginal assembly.

Updated genome assembly FASTA file.
DOI: 10.21233/qkt0-wy72
title: Floodwood Road Bog Pond pollen surface sample dataset

description: Raw data for the Floodwood Road Bog Pond pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/rrd9-5j72
title: LDDsite1401 water chemistry dataset

description: Raw data for the LDDsite1401 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/ckpq-7z17
title: LDDsite4520 ostracode surface sample dataset

description: Raw data for the LDDsite4520 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/ym69-hc26
title: LDDsite4679 ostracode surface sample dataset

description: Raw data for the LDDsite4679 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/fae4-d226
title: LDDsite4100 ostracode surface sample dataset

description: Raw data for the LDDsite4100 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.ft4zrw
title: Occurrence Download

description: A dataset containing 10689 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rubus parvifolius L.",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10689 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021662-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/8k6w-xw96
title: Penfield Pond water chemistry dataset

description: Raw data for the Penfield Pond water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.28806470.v4
title: Research Data Journal Isbat (16 April 2025).csv

description: This study aims to analyze the collaboration between servant leadership and Adversity Quotient (AQ) in improving employee performance and commitment to the organization at the Bogor Regency Regional-Owned Enterprises (BUMD), with work motivation as an intervening variable. This study uses a sequential explanatory method with Structural Equation Modeling (SEM). The results of the study indicate that the collaboration between servant leadership and AQ has a significant effect on employee performance, commitment to the organization, and work motivation. Work motivation is proven to act as a mediator that strengthens the influence of servant leadership and AQ on employee performance and commitment. In conclusion, strengthening the collaboration between servant leadership, AQ, and work motivation can be an effective strategy to improve employee performance and commitment at BUMD.
DOI: 10.21233/vj0r-8h79
title: SWF12H geochemistry dataset

description: Raw data for the SWF12H geochemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/gtpc-0716
title: LDDsite2178 ostracode surface sample dataset

description: Raw data for the LDDsite2178 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/jh1y-6823
title: Weatherhead Hollow Pond diatom surface sample dataset

description: Raw data for the Weatherhead Hollow Pond diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/kzh3-8g46
title: EcPp-24 vertebrate fauna dataset

description: Raw data for the EcPp-24 vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.15365594
title: Parental Perceptions and Knowledge on Antibiotic Use in Romanian DATASET.xlsx
DOI: 10.5281/zenodo.15365595
title: Parental Perceptions and Knowledge on Antibiotic Use in Romanian DATASET.xlsx
DOI: 10.21233/56zk-9z84
title: Robert Creek water chemistry dataset

description: Raw data for the Robert Creek water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.25345/c5fq9qj1j
title: MassIVE MSV000097830 - Data from New collagen peptide markers from New Guinea fauna: Identifying archaeological bone in the tropics
title: Raw MS/MS files for new collagen peptide markers from New Guinea fauna. Markers developed using Byonic v.5.8.24 (Protein Metric Inc.).
DOI: 10.6084/m9.figshare.28957397
title: Supplementary Material for: Dental practitioners’ thresholds for restorative intervention in carious lesions: a survey based systematic review update

description: Introduction: Despite evidence supporting the clinical and cost-effectiveness of Minimally Invasive Dentistry (MID), its adoption by the dental profession has been slow. A systematic review in 2016 found the majority of dentists intervene invasively earlier than necessary. The aim was to update this review of the assessment of dental practitioners’ thresholds for providing restorative treatment for carious lesions given changes in evidence, teaching and guidelines since 2016. The primary outcome was dental practitioners’ restorative thresholds (the extent of the lesion when they would decide to intervene restoratively). Secondary outcomes were changes over time; caries risk; regional differences and primary/permanent dentition.

Methods: This updated review replicated the methodology for the initial review, following the PRISMA 2020 guideline (PROSPERO; CRD42023431906). EMBASE, Medline (via PubMed) and Web of Science databases were searched (2016 to 2023) for observational studies reporting on dental clinicians’ thresholds for restorative interventions in adults and children without language, time or quality restrictions. Screening, data extraction and risk of bias assessment (Modified Newcastle-Ottawa Scale) were carried out independently and in duplicate. Meta-analyses were performed using a random effects model. No funding sought.

Results: Overall, 47 publications (30 from original publication and 17 from updated search) met the inclusion criteria and 65 datasets were included in the meta-analyses; 19 for occlusal lesions (16 pre-2016 and 3 post-2016; n=11,946) and 46 for proximal lesions (38 pre-2016 and 8 post 2016; n=20,428). The meta-analyses found that for occlusal lesions confined to enamel, there were fewer practitioners intervening invasively: 5% (95% confidence interval [CI]; 1-20%) post-2016, compared with 15% (95% CI; 9-23%) pre-2016. The opposite was found for proximal lesions with increased intervention levels, 27% (95% CI; 18-40%) for lesions confined to enamel post-2016, compared with 19% (95% CI; 12-29%) pre-2016, and for lesions extending up to the enamel-dentine junction 61% (95% CI; 36-81%) post-2016, compared with 39% (95%CI; 29-51%) pre-2016. There was variance between regions but too few studies to draw conclusions on individual regions.

Conclusion: There was suggestion of less invasive treatment of occlusal lesions over time, however this was not evident for proximal lesions.
DOI: 10.6084/m9.figshare.28957397.v1
title: Supplementary Material for: Dental practitioners’ thresholds for restorative intervention in carious lesions: a survey based systematic review update

description: Introduction: Despite evidence supporting the clinical and cost-effectiveness of Minimally Invasive Dentistry (MID), its adoption by the dental profession has been slow. A systematic review in 2016 found the majority of dentists intervene invasively earlier than necessary. The aim was to update this review of the assessment of dental practitioners’ thresholds for providing restorative treatment for carious lesions given changes in evidence, teaching and guidelines since 2016. The primary outcome was dental practitioners’ restorative thresholds (the extent of the lesion when they would decide to intervene restoratively). Secondary outcomes were changes over time; caries risk; regional differences and primary/permanent dentition.

Methods: This updated review replicated the methodology for the initial review, following the PRISMA 2020 guideline (PROSPERO; CRD42023431906). EMBASE, Medline (via PubMed) and Web of Science databases were searched (2016 to 2023) for observational studies reporting on dental clinicians’ thresholds for restorative interventions in adults and children without language, time or quality restrictions. Screening, data extraction and risk of bias assessment (Modified Newcastle-Ottawa Scale) were carried out independently and in duplicate. Meta-analyses were performed using a random effects model. No funding sought.

Results: Overall, 47 publications (30 from original publication and 17 from updated search) met the inclusion criteria and 65 datasets were included in the meta-analyses; 19 for occlusal lesions (16 pre-2016 and 3 post-2016; n=11,946) and 46 for proximal lesions (38 pre-2016 and 8 post 2016; n=20,428). The meta-analyses found that for occlusal lesions confined to enamel, there were fewer practitioners intervening invasively: 5% (95% confidence interval [CI]; 1-20%) post-2016, compared with 15% (95% CI; 9-23%) pre-2016. The opposite was found for proximal lesions with increased intervention levels, 27% (95% CI; 18-40%) for lesions confined to enamel post-2016, compared with 19% (95% CI; 12-29%) pre-2016, and for lesions extending up to the enamel-dentine junction 61% (95% CI; 36-81%) post-2016, compared with 39% (95%CI; 29-51%) pre-2016. There was variance between regions but too few studies to draw conclusions on individual regions.

Conclusion: There was suggestion of less invasive treatment of occlusal lesions over time, however this was not evident for proximal lesions.
DOI: 10.21233/gegp-q660
title: Soledad Pond pollen dataset

description: Raw data for the Soledad Pond pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/d60g-8s28
title: Schwarzsee pollen surface sample dataset

description: Raw data for the Schwarzsee pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/pnrb-cq85
title: TK-48 water chemistry dataset

description: Raw data for the TK-48 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.hcbtdx
title: Occurrence Download

description: A dataset containing 283 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Patanga succincta (Johannson, 1763)"
 ]
}

 The dataset includes 283 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021663-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/mq6r-1703
title: Peter Hope Lake diatom surface sample dataset

description: Raw data for the Peter Hope Lake diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.pppm2a
title: Occurrence Download

description: A dataset containing 744 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Japan",
 "OccurrenceStatus is Present",
 "TaxonKey is Patanga japonica (Bolívar, 1898)",
 "Year 1937-2025"
 ]
}

 The dataset includes 744 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021664-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15474411
title: RoadMark-binary: 29,405 RGB aerial tiles with ground truth masks labeled with horizontal road line marking information

description: The dataset consists of 27,360 PNG images (256x256pixels) x 3 bands of high resolution aerial orthoimages at 0,15 m/pixel of resolution with a 12.5% overlap, covering a land area of 40.34 km². The images contain information related to representative road lines and markings found on highway pavement and is labelled for binary semantic segmentation. 

Test data: A novel area from the Madrid region labeled with binary road marking line information, divided into 2,045 RGB tiles of 256 × 256 pixels, with no tile overlap (land area of 3.02 km²).

The “Road_Marking” class covers approximately 5% of the ground truth pixels. 

Road names included in dataset are: A-1101, A-129, A-1402, A-1506, A-2228, A-227, A-2302, A-331, A-333, A-4050, A-421, A-55, A-6_M-50, A-6200, AB-515, AC-400, AP-15AS-265, CL-602, CL-626, CL-631, CM-2105, CM-211, CM-3127, CM-3129, CM-403, CV-41, CV-70, CV-801, CV-845, DSA-469, EI-500, EX-104, EX-105, GC-2, GC-800, LZ-10M-50, M-510, Ma-1, Ma-12, Ma-15, MA-15_VDS1, Ma-19A, MA-3011, Ma-3220, Ma-3240, Ma-3301, Ma-3341, Ma-3510, Ma-5010, Ma-5020, Ma-5030, Ma-5040, Ma-5101N-322, N-340A, N-420-1, N-547, N-634, OU-302, RM-315, RM-E19, TF-64