cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10407375
title: Compressed EAMv1 simulation output for evaluating two aerosol process coupling schemes

description: EAMv1 is version 1 of the atmosphere component of the Energy Exascale Earth System Model (E3SM, https://github.com/E3SM-Project/E3SM). This upload contains processed output from transient simulations conducted using the F20TRC5-CMIP6 compset. The EAMv1 source code used in the simulations can be found in Zenodo record 7995850. Scripts used to conduct and analyze the simulations can be found in Zenodo record 10371316. 

The following tarballs contain annually averaged simulation output:



cflx_1_L30_F20TRC5-CMIP6.tar.gz

cflx_1_L72_F20TRC5-CMIP6.tar.gz

cflx_2_L30_F20TRC5-CMIP6.tar.gz

cflx_2_L72_F20TRC5-CMIP6.tar.gz


The following split archives contain 6-hourly simulation output:



cflx_1_L30_F20TRC5-CMIP6_6h.tar.gz.*

cflx_2_L72_F20TRC5-CMIP6_6h.tar.gz.*


The split archives can be recombined and untarred using, e.g., the following commands: 

${casename}="cflx_1_L30_F20TRC5-CMIP6_6h"
cat ${casename}.tar.gz.* | tar xzvf -

A copy of the uncompressed and unsplit files can be found through NERSC's web portal.
DOI: 10.5281/zenodo.10407374
title: Compressed EAMv1 simulation output for evaluating two aerosol process coupling schemes

description: EAMv1 is version 1 of the atmosphere component of the Energy Exascale Earth System Model (E3SM, https://github.com/E3SM-Project/E3SM). This upload contains processed output from transient simulations conducted using the F20TRC5-CMIP6 compset. The EAMv1 source code used in the simulations can be found in Zenodo record 7995850. Scripts used to conduct and analyze the simulations can be found in Zenodo record 10371316. 

The following tarballs contain annually averaged simulation output:



cflx_1_L30_F20TRC5-CMIP6.tar.gz

cflx_1_L72_F20TRC5-CMIP6.tar.gz

cflx_2_L30_F20TRC5-CMIP6.tar.gz

cflx_2_L72_F20TRC5-CMIP6.tar.gz


The following split archives contain 6-hourly simulation output:



cflx_1_L30_F20TRC5-CMIP6_6h.tar.gz.*

cflx_2_L72_F20TRC5-CMIP6_6h.tar.gz.*


The split archives can be recombined and untarred using, e.g., the following commands: 

${casename}="cflx_1_L30_F20TRC5-CMIP6_6h"
cat ${casename}.tar.gz.* | tar xzvf -

A copy of the uncompressed and unsplit files can be found through NERSC's web portal.
DOI: 10.57830/2301852
title: Saint Croix National Scenic Riverway Invertebrate Data Package by the Great Lakes Inventory and Monitoring Network

description: Benthic macroinvertebrates have long been used as an indicator of water quality impairment in streams and rivers. Indices of Biotic Integrity (IBI) calculated from macroinvertebrate diversity and abundance data can be used to assess if stream ecosystems are being subjected to stressors, such as pollution, low dissolved oxygen, high temperatures, excessive sedimentation, or changes in flow. Beginning in 2016, the Great Lakes Inventory and Monitoring Network (GLKN) and  park staff have been monitoring macroinvertebrates annually at up to ten sites on the St. Croix and Namekagon rivers within the St. Croix National Scenic Riverway (SACN).  In this effort, Hester-Dendy artificial substrate samplers are deployed in July, colonized by macroinvertebrates over a six-week period, and are then retrieved. Samples are cleaned of debris and macroinvertebrates are preserved and sent to a laboratory. At the laboratory Samples are enumerated and identified to the lowest possible taxonomic level This dataset contains all GLKN large river macroinvertebrate data collected to date at SACN. At time of publication, all known relevant parameters needed to assess abundance and diversity of macroinvertebrates and calculate relevant IBIs at mainstem Namekagon and St. Croix River sites within SACN are included in the dataset.
DOI: 10.5281/zenodo.10407685
title: Property-Based Testing in Practice: Codebook
DOI: 10.5281/zenodo.10407686
title: Property-Based Testing in Practice: Codebook
DOI: 10.5281/zenodo.10407466
title: Dataset supporting "Daily Timescale Analysis of Sediment Transport and Topographic Changes on a Mesotidal Sandy Beach under Low to Moderate Wave Conditions", by Rodríguez-Padilla et al., submitted to Marine Geology

description: This dataset comprises seven Matlab structure files containing measurements from different instruments deployed at Barra del Estero Beach (Baja California, Mexico) during a one-week field experiment (10-16/June/2016).

Dataset:



Wind speed and direction (MET.mat)

Offshore wave conditions (ADCP_22m.mat)

Depth-averaged velocities and pressure data (ADCP_22m.mat; ADCP_4m.mat; ADCP_2m.mat) 

Burst-averaged velocities and suspended sediment concentration time series (NADV.mat; SADV.mat)

Daily topographic maps


Note: The time-vector in all files is expressed in local time (GMT-7).
DOI: 10.5281/zenodo.10407465
title: Dataset supporting "Daily Timescale Analysis of Sediment Transport and Topographic Changes on a Mesotidal Sandy Beach under Low to Moderate Wave Conditions", by Rodríguez-Padilla et al., submitted to Marine Geology

description: This dataset comprises seven Matlab structure files containing measurements from different instruments deployed at Barra del Estero Beach (Baja California, Mexico) during a one-week field experiment (10-16/June/2016).

Dataset:



Wind speed and direction (MET.mat)

Offshore wave conditions (ADCP_22m.mat)

Depth-averaged velocities and pressure data (ADCP_22m.mat; ADCP_4m.mat; ADCP_2m.mat) 

Burst-averaged velocities and suspended sediment concentration time series (NADV.mat; SADV.mat)

Daily topographic maps


Note: The time-vector in all files is expressed in local time (GMT-7).
DOI: 10.6084/m9.figshare.24025728.v1
title: SNP Allocation For Estimating Heritability (SAFE-<i>h</i><sup>2</sup>): A tool to explore genomic origins of phenotypes for estimation of SNP heritability using additive-only allelic effects or additive and non-additive allelic effects

description: SAFE-<i>h</i><sup>2 </sup>is developed under an academic research study to provide proper estimates of SNP heritability. For this, SAFE-<i>h</i><sup>2 </sup>creates heritability profiles to prevent SNPs with illogical negative contributions to heritability. It also minimizes the contributions by false-positive SNP hits. Finally, SAFE-<i>h</i><sup>2</sup> can perform a joint analysis on both additive and non-additive allelic effects. Therefore, it also provides the chance for GWASs to perform linear association tests while capturing both additive and non-additive effects.<b>Software Availability:</b> SAFE-<i>h</i><sup>2 </sup>(SNP Allocation For Estimating Heritability)<b> </b>contains the compiled SAFE-<i>h</i><sup>2</sup> scripts with related installation and usage manual (Download link: https://github.com/SAFE-h2/SAFE-h2).Read the related research article “<b>SNP Allocation For Estimating Heritability (SAFE-</b><b><i>h</i></b><sup><strong>2</strong></sup><b>): A tool to explore genomic origins of phenotypes for estimation of SNP heritability using additive-only allelic effects or additive and non-additive allelic effects” (doi:</b> https://doi.org/10.1101/2023.08.28.555092<b>)</b> for the full study and descriptions.<b>Citation: </b><i>Behrooz Darbani, Mogens Nicolaisen. </i>SNP Allocation For Estimating Heritability (SAFE-<i>h</i><sup>2</sup>): A tool to explore genomic origins of phenotypes for estimation of SNP heritability using additive-only allelic effects or additive and non-additive allelic effects. doi: https://doi.org/10.1101/2023.08.28.555092<b>Contact: behroozdarbani@gmail.com, bd@agro.au.dk</b>Department of Agroecology, Faculty of Technical Sciences, Aarhus University, Slagelse, Denmark
DOI: 10.5281/zenodo.10406937
title: Simulation outputs for the study on the transition from freezing rain to ice pellets during WINTRE-MIX IOP4

description: Simulation outputs used in the study that investigates the transition from freezing rain to ice pellets during WINTRE-MIX IOP4. The name of each zip file represents the corresponding simulation described in the manuscript (i.e., CTL, MYJ, and MYJ_HM simulations). Due to the size limit, only variables used in the study are uploaded.
DOI: 10.5281/zenodo.10406938
title: Simulation outputs for the study on the transition from freezing rain to ice pellets during WINTRE-MIX IOP4

description: Simulation outputs used in the study that investigates the transition from freezing rain to ice pellets during WINTRE-MIX IOP4. The name of each zip file represents the corresponding simulation described in the manuscript (i.e., CTL, MYJ, and MYJ_HM simulations). Due to the size limit, only variables used in the study are uploaded.
DOI: 10.21227/czq4-bm60
title: Weather Forecast dataset

description: The provided dataset appears to contain weather-related information for New Delhi Safdarjung, India, spanning from January 1, 2023, to July 21, 2023. The dataset includes the following columns: Station ID, Station Name, Date, Precipitation (PRCP), Average Temperature (TAVG), Maximum Temperature (TMThe dataset includes daily observations with information on precipitation and temperature. It seems that some values are missing (NULL values), and there are variations in the units used for precipitation AX), and Minimum Temperature (TMIN).
DOI: 10.5517/ccdc.csd.cc2838b0
title: CCDC 2088511: Experimental Crystal Structure Determination

description: Related Article: Jiangjiang Tang|2022|CSD Communication|||
description: Related Article: Cong Guo, Hui-Jun Geng, Wen-Ji Wang, Yan-Xiang Liu, Lu Deng, Jun-Mian Tian, Jin-Ming Gao, Jiang-Jiang Tang|2024|Phytochemistry|218|113951|doi:10.1016/j.phytochem.2023.113951
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2bxwz4
title: CSD 2172727: Experimental Crystal Structure Determination

description: Related Article: Min Chen, Zhengli Liang, Xiaoxiao Wang, Jiehua Li, Xingguo Chen, Xingxing Jiang, Zheshuai Lin, Zhen Ma, Hongming Liu|2022|Inorg.Chem.|61|18162|doi:10.1021/acs.inorgchem.2c02833
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2bxx06
title: CSD 2172728: Experimental Crystal Structure Determination

description: Related Article: Min Chen, Zhengli Liang, Xiaoxiao Wang, Jiehua Li, Xingguo Chen, Xingxing Jiang, Zheshuai Lin, Zhen Ma, Hongming Liu|2022|Inorg.Chem.|61|18162|doi:10.1021/acs.inorgchem.2c02833
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2bxx17
title: CSD 2172729: Experimental Crystal Structure Determination

description: Related Article: Min Chen, Zhengli Liang, Xiaoxiao Wang, Jiehua Li, Xingguo Chen, Xingxing Jiang, Zheshuai Lin, Zhen Ma, Hongming Liu|2022|Inorg.Chem.|61|18162|doi:10.1021/acs.inorgchem.2c02833
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2bxx28
title: CSD 2172730: Experimental Crystal Structure Determination

description: Related Article: Min Chen, Zhengli Liang, Xiaoxiao Wang, Jiehua Li, Xingguo Chen, Xingxing Jiang, Zheshuai Lin, Zhen Ma, Hongming Liu|2022|Inorg.Chem.|61|18162|doi:10.1021/acs.inorgchem.2c02833
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc25cbc8
title: CSD 2006889: Experimental Crystal Structure Determination

description: Related Article: Jin Chen, Ke-Zhao Du|2022|Inorg.Chem.|61|17893|doi:10.1021/acs.inorgchem.2c03267
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2d1880
title: CSD 2205751: Experimental Crystal Structure Determination

description: Related Article: Jin Chen, Ke-Zhao Du|2022|Inorg.Chem.|61|17893|doi:10.1021/acs.inorgchem.2c03267
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d1c50
title: CSD 2205841: Experimental Crystal Structure Determination

description: Related Article: Gereon Behrendt, Nils Prinz, Anna Wolf, Lorena Baumgarten, Abhijeet Gaur, Jan-Dierk Grunwaldt, Mirijam Zobel, Malte Behrens, Sebastian Mangelsen|2022|Inorg.Chem.|61|19678|doi:10.1021/acs.inorgchem.2c01976
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d1c61
title: CSD 2205842: Experimental Crystal Structure Determination

description: Related Article: Gereon Behrendt, Nils Prinz, Anna Wolf, Lorena Baumgarten, Abhijeet Gaur, Jan-Dierk Grunwaldt, Mirijam Zobel, Malte Behrens, Sebastian Mangelsen|2022|Inorg.Chem.|61|19678|doi:10.1021/acs.inorgchem.2c01976
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bvvz1
title: CSD 2170774: Experimental Crystal Structure Determination

description: Related Article: Aleksei S. Pronin, Yakov M. Gayfulin, Taisiya S. Sukhikh, Yuri V. Mironov|2022|Inorg.Chem.|61|19756|doi:10.1021/acs.inorgchem.2c02556
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bvw03
title: CSD 2170775: Experimental Crystal Structure Determination

description: Related Article: Aleksei S. Pronin, Yakov M. Gayfulin, Taisiya S. Sukhikh, Yuri V. Mironov|2022|Inorg.Chem.|61|19756|doi:10.1021/acs.inorgchem.2c02556
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bvw36
title: CSD 2170778: Experimental Crystal Structure Determination

description: Related Article: Aleksei S. Pronin, Yakov M. Gayfulin, Taisiya S. Sukhikh, Yuri V. Mironov|2022|Inorg.Chem.|61|19756|doi:10.1021/acs.inorgchem.2c02556
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2d2gqp
title: CSD 2206912: Experimental Crystal Structure Determination

description: Related Article: Tianyu Zhu, Bei Zhu, Olivier Mentré, Suheon Lee, Dan Chen, Yanling Jin, Wenxuan Zhu, Ángel M. Arévalo-López, Claire Minaud, Kwang-Yong Choi, Minfeng Lü|2023|Chem.Mater.|35|3951|doi:10.1021/acs.chemmater.3c00177
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2cnkby
title: CSD 2194500: Experimental Crystal Structure Determination

description: Related Article: Jonas Jacobs, James R. Hester, Stefan G. Ebbinghaus|2022|Inorg.Chem.|61|17202|doi:10.1021/acs.inorgchem.2c02776
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2cjjm2
title: CSD 2190634: Experimental Crystal Structure Determination

description: Related Article: Jonas Jacobs, James R. Hester, Stefan G. Ebbinghaus|2022|Inorg.Chem.|61|17202|doi:10.1021/acs.inorgchem.2c02776
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.24869886
title: JujubeDataSet

description: Jujube
DOI: 10.5281/zenodo.10401241
title: Virtual Reality Traces for Traffic Classification

description: We use two Python scripts located in the 'Python Scripts' folder: one for `Feature Extraction' and another for the `Classification Model'. Initially, we extract features from raw packet traces, which have been stored in the 'Packet Traces' folder. The `Feature Extraction' script generates CSV output files, which become the input for the `Classification Model' script. The resulting input for the training and testing phase is stored in the folders of `Input For Training' and `Input For Test', respectively. Specifically, we have four designated folders: `Packet Traces', `Input For Training', `Input For Test', and `Python Scripts'.
DOI: 10.5281/zenodo.10401242
title: Virtual Reality Traces for Traffic Classification

description: We use two Python scripts located in the 'Python Scripts' folder: one for `Feature Extraction' and another for the `Classification Model'. Initially, we extract features from raw packet traces, which have been stored in the 'Packet Traces' folder. The `Feature Extraction' script generates CSV output files, which become the input for the `Classification Model' script. The resulting input for the training and testing phase is stored in the folders of `Input For Training' and `Input For Test', respectively. Specifically, we have four designated folders: `Packet Traces', `Input For Training', `Input For Test', and `Python Scripts'.
DOI: 10.7274/24870381
title: Behavioral data from Rose, Craik, & Buchsbaum, 2015, JoCN

description: Behavioral data from:
Rose, N. S., Craik, F. I. M., & Buchsbaum, B. R. (2015). Levels of processing in working memory: Differential involvement of frontotemporal networks. Journal of Cognitive Neuroscience, 27(3), 522–532. https://doi.org/10.1162/jocn_a_00738

All raw, trial-level data for all 18 subjects are included along with the stimulus lists, pivot tables, graphs, and strategy reports. Performance data consist of LOP decision accuracy and RT, word recall accuracy and response time on the working memory (Brown-Peterson) task, final free recall accuracy, subsequent recognition memory accuracy, RT, and confidence ratings, intrusions, reminiscence, and post-experiment self-reported (global) working memory maintenance strategies (refreshing, visualization, association, etc.)

Associate fMRI data may be available upon request.
DOI: 10.7274/24870381.v1
title: Behavioral data from Rose, Craik, & Buchsbaum, 2015, JoCN

description: Behavioral data from:
Rose, N. S., Craik, F. I. M., & Buchsbaum, B. R. (2015). Levels of processing in working memory: Differential involvement of frontotemporal networks. Journal of Cognitive Neuroscience, 27(3), 522–532. https://doi.org/10.1162/jocn_a_00738

All raw, trial-level data for all 18 subjects are included along with the stimulus lists, pivot tables, graphs, and strategy reports. Performance data consist of LOP decision accuracy and RT, word recall accuracy and response time on the working memory (Brown-Peterson) task, final free recall accuracy, subsequent recognition memory accuracy, RT, and confidence ratings, intrusions, reminiscence, and post-experiment self-reported (global) working memory maintenance strategies (refreshing, visualization, association, etc.)

Associate fMRI data may be available upon request.
DOI: 10.7274/24870384
title: Bonas, Ricther and Castruccio - 2023 PIDDRN

description: Datasets used for producing figures and tables within Bonas, Richter, and Castruccio - 2023 PIDDRN. Email Stefano Castruccio (scastruc@nd.edu) for further details.
DOI: 10.7274/24870384.v1
title: Bonas, Ricther and Castruccio - 2023 PIDDRN

description: Datasets used for producing figures and tables within Bonas, Richter, and Castruccio - 2023 PIDDRN. Email Stefano Castruccio (scastruc@nd.edu) for further details.
DOI: 10.5281/zenodo.10407427
title: MIVAS study

description: Tabla de contenidos 

The original gut microbiota raw data. The raw sequencing data were analyzed using an internal pipeline. Quality pass filter reads were grouped into operational taxonomic units (OTU). Quality control was performed by discarding paired ends with an overlap of less than 200nt and removing chimeric sequences.