cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.rd435pq/1
title: Simulation of the hierarchical model with frequency-dependent transmission.

description: Simulation of the hierarchical model with frequency-dependent transmission.
DOI: 10.5061/dryad.rd435pq/2
title: Simulation of the hierarchical model with transmission that depends on the abundance of pathogens within hosts.

description: Simulation of the hierarchical model with transmission that depends on the abundance of pathogens within hosts.
DOI: 10.5061/dryad.vn85pg1/1
title: Kenting_Abundance_Data

description: The absolute abundances (i.e., individuals) of 67 woody plant species (DBH 1-2 cm) for the 2008 census and 2013 census of the Kenting Karst Forest Dynamics Plot, Taiwan. See the main text and Appendix S5 of Chao et al. (2019) for analysis details.
DOI: 10.5061/dryad.vn85pg1/2
title: Kenting_Phylo_Tree

description: The phylogenetic tree (in Newick format) of 67 plant species (DBH 1-2 cm) for two censuses (2008 and 2013) of the Kenting Karst Forest Dynamics Plot, Taiwan. See the main text and Appendix S5 of Chao et al. (2019) for analysis details.
DOI: 10.17632/87zcs3c8zc.1
title: Data for: The influence of environmental and health indicators on premature mortality: An empirical analysis of the City of Toronto’s 140 neighborhoods

description: Demographic, socioeconomic, environmental and health data for 140 neighbourhoods of the City of Toronto
DOI: 10.17632/pf4wycty2p.1
title: Data for: The influence of environmental and health indicators on premature mortality: An empirical analysis of the City of Toronto’s 140 neighborhoods

description: Environmental and health indicator data; also includes population and neighbourhood area data used in data standardization.
DOI: 10.17632/y9k8nvmdv8.1
title: Data for: Resolving the paradox: continuous cell-free alkaline phosphatase activity despite high phosphate concentrations

description: Data from paper: Resolving the paradox: continuous cell-free alkaline phosphatase activity despite high phosphate concentrations
DOI: 10.5061/dryad.076v807/1
title: Plant and pollinator community
DOI: 10.5061/dryad.0ff6b04/1
title: Paleoclimate Reconstructions

description: Cenozoic estimated air surface temperature (EAST) in the Northern Hemisphere at one degree resolution with coordinate reference system (CRS) "+proj=longlat +ellps=WGS84 +datum=WGS84 +no_defs +towgs84=0,0,0". The file ‘EAST_60to0Ma_Hagen_etal_2019.csv’ contains the x and y coordinates followed by the EAST at the given coordinate and time, starting at 60 Ma and ending at 0 Ma (i.e. present) as indicated by the column names. The file ‘read_paleoclimate.R’ contains code on how to load and convert ‘EAST_60to0Ma_Hagen_etal_2019.csv’ into a raster with the correct coordinate reference system and an example on plotting the Northern Hemisphere estimated air surface temperature at 60Ma.
DOI: 10.5061/dryad.0ff6b04/2
title: Richness Patterns

description: Data of species and genus richness for the Northern Hemisphere for the present, masked for cold regions criteria and aggregated at two degree resolution with CRS “+proj=longlat +datum=WGS84 +no_defs +ellps=WGS84 +towgs84=0,0,0” The raster ‘cold-adapted_species.tif’ and ‘cold-adapted_genera.tif’ contains the richness of cold-adapted species and genera respectively, and is the data set used to produce Figure 3. The six files ‘cold-adapted_family_[family name].tif’ contain the richness for the Compositae, Poaceae, Leguminosae, Brassicaceae, Cyperaceae, and Rosaceae families. These are the six most common cold-adapted families for the Northern Hemisphere and is the data used to produce Figure 4. The script ‘read_plor_richness.patterns.R’ loads and plots one simple example of richness patterns in a Artic Polar Stereographic projection (EPSG:3995). The folder ‘ocean_layer’ contains an ocean layer shapefile used to facilitate data visualization.
DOI: 10.5061/dryad.0ff6b04/3
title: Species Range Mapping

description: In a simplified way, the four main process from data to species ranges are: 1. Extract occurrence data from GBIF species that are pre-selected as cold-adapted or that complement Hulten’s ranges maps and the Panarctic Flora checklist. For that, data manipulation and a pre-resolution of species taxonomic names is necessary (see ‘1.extract_pre-select_cold_plants_gbif.R’). 2. After resolving taxonomic names and synonyms within datasets, merge distribution data (see ‘2.merge_dataset.R’). 3. From all merged points, create range maps using ecoregions and climatic layers information (see ‘3.create_range.R’). 4. After having clean datasets, merge all datasets (see ‘4.merge_datasets.R’). Additional steps as the removal of plants not belonging to the Angiosperms clade, masking of the cold areas and the manual check of species names are not provided here, given their simplicity, specificity to a cluster computer and large quantity of intermediate individual files. Inside the folder ‘support_functions’, there are four functions called by the scripts mentioned above. All functions have a short description and parameters are shortly described. The file (i) ‘range_from_points.R’ contains the function used to create range maps from occurrence data. The file (ii) ‘resolve_taxonomic_names.R’ contains the function used to automatically resolve taxonomic names and look for synonyms while deleting clear mistakes. The taxonomic name resolution procedure involved a manual check of all species. The file (iii) ‘merge_occurance_data.R’ merges occurrence data from a same dataset considering duplicates and corrected species names. This function requires a species names resolution matrix and a specific structure for datasets (i.e. occurrences inside a folder named ‘points’ with a txt file for each species name containing x and y coordinates). The final occurrence data is stored in a folder named ‘merged_point’. The file (iv) ‘compress_housekeeping.R’ contains a function conveniently called after generating the merged points. It compresses all occurrence data inside ‘point’ folder and deletes the folder while keeping a compressed zip file for reference.
DOI: 10.5061/dryad.104d626/1
title: Aspen Defense Ontogenetic Trajectory Data

description: This file contains data on trajectories of defense allocation. Each row is one individual tree. The second tab is has README information on each variable within the data.
DOI: 10.5061/dryad.104d626/2
title: Aspen Yearly Trait Data

description: This file contains data on tree size, defense, and leaf traits. Each row is one year of observations for one individual tree. The second tab is has README information on each variable within the data.
DOI: 10.5061/dryad.278330p/1
title: Shoaling behavior and body sizes of alarm cue-exposed and control Pimephales promelas

description: This data originates from a laboratory study on Pimephales promelas. In a split-clutch design, fish were raised under different levels of perceived predation risk (alarm cues or distilled water). The shoaling and body size data contained in this document was obtained during shoaling assays at 39 days age. Column headings contain both the variable name and the unit (after the last dot) where applicable. Detailed information on how this data was obtained is contained in the corresponding manuscript.
DOI: 10.5061/dryad.3339pf4/1
title: Morphological data of wild-caught individuals

description: The file shows all the selected morphological metrics of wild-caught individuals, such as the number of annual ring, the weight and size.
DOI: 10.5061/dryad.3339pf4/2
title: Morphological data of lab-reared individuals

description: The file shows the selected morphological metrics of lab-reared juveniles.
DOI: 10.5061/dryad.3339pf4/3
title: The width of light and dark rings

description: The file showed the width of light and dark rings on the plates of shallow water and deep-sea individuals
DOI: 10.5061/dryad.44bm68r/1
title: README

description: Contains description of Dryad upload
DOI: 10.5061/dryad.44bm68r/2
title: R Script

description: R script used for analysis and to produce figures
DOI: 10.5061/dryad.44bm68r/3
title: allmales

description: Complete data file of female and male data including data for each mating mating regime (no competition, direct, and indirect competition) and male trait measurements
DOI: 10.5061/dryad.44bm68r/4
title: No_Competition_Only

description: Data file of male and female mating pairs for the no competition mating regime only
DOI: 10.5061/dryad.44bm68r/5
title: Direct_Competition_Only

description: Data file of male and female mating sets for the direct competition mating regime only
DOI: 10.5061/dryad.44bm68r/6
title: Indirect_Competition_Only

description: Data file of male and female mating sets for the indirect competition mating regime only
DOI: 10.5061/dryad.5fm57t0/1
title: ramet-based demographic and trait data

description: File contains data for 2014 and 2015 that were used to parameterize the vital rate functions. Contains both demographic and trait data.
DOI: 10.5061/dryad.5fm57t0/2
title: spatial location data for ramets of A. syriaca

description: File contains spatial location data along 1 m wide transects for 2014 and 2015 for Asclepias syriaca ramets.
DOI: 10.5061/dryad.5fm57t0/3
title: number of seeds per pod for A. syriaca

description: File contains seed count data for individual pods on Asclepias syriaca ramets.
DOI: 10.5061/dryad.5fm57t0/4
title: demographic data for ramets of A. syriaca

description: File contains demographic data collected between 2013-2017 at 7 sites for A. syriaca ramets
DOI: 10.5061/dryad.6280834/1
title: data pollen load

description: The file contains pollen load data. Quantity of pollen of tree species removed from the body of captured sunbird species. Sunbird species are listed at the top row while tree species are on the second column.
DOI: 10.5061/dryad.674p6n0/1
title: Montagnes et al A revised consumer-resource Fig 3 raw data

description: These are the growth and ingestion data presented in Figure 3 of our paper.  The main text of the paper describes how they were collected.
DOI: 10.5061/dryad.6d66b49/1
title: Data from: Organic farming and associated management practices benefit multiple wildlife taxa: A large-scale field study in rice paddy landscapes

description: Data on biodiversity and environmental factors in rice fields surveyed during 2013–2015 across Japan.
DOI: 10.5061/dryad.72sn74q/1
title: data1_Spatial_isolation_data

description: Lat/lon coordinates for all known S. breweri and S. hesperidis sites from McLaughlin Natural Reserve.
DOI: 10.5061/dryad.72sn74q/2
title: data2_Phenology_data_2014

description: Phenology data from 2014.
DOI: 10.5061/dryad.72sn74q/3
title: data3_Phenology_data_2015

description: Phenology data from 2015.
DOI: 10.5061/dryad.72sn74q/4
title: data4_Phenology_data_2016

description: Phenology data from 2016.
DOI: 10.5061/dryad.72sn74q/5
title: data5_Pollinator_richness_data

description: Pollinator richness data.
DOI: 10.5061/dryad.72sn74q/6
title: data6_Pollinator_abundance_data

description: Pollinator abundance data.
DOI: 10.5061/dryad.72sn74q/7
title: data7_Crossing_data

description: Crossing data - used to calculate intrinsic postzygotic RI at the fruit set/fertilization and seed production life history stages.
DOI: 10.5061/dryad.7gr71pk/1
title: Rio Grande Sucker Gila basin

description: Microsatellite data is provided for 10 loci in GenAlEx format. Population information is provided in column two of speadsheet--usats. Mitochondrial DNA haplotype information is provided for the 526 base pair fragment of ND4 and the 303 base pair fragment of cyt-b, samples are in the same order as the microsatellite file
DOI: 10.5061/dryad.92kr452/1
title: data

description: Bacterial number, Biomass of Mikania, Biomass of Coix, Colonization of AMF
DOI: 10.5061/dryad.93h3dk2/1
title: N.H. Sazali et al

description: The data were collected for the salting-out liquid liquid extraction for the determination of vitamin D3 in milk samples
DOI: 10.5061/dryad.bt3ng2j/3
title: ConflictPoints

description: This file contains the data for the reported cougar conflict used in the selection function (RSF) to determine if cougar conflict locations differed from cougar use. This processed version has all geographic coordinate information removed as many of these locations are on private property and cannot be given out in raw form. Variables included are Canopy, Distance.to.Canopy, Heat.Loading, Elevation, Housing.Density, Topographic.Wetness, Distance.to.Road, Distance.to.Structure and Density.Class.
DOI: 10.5061/dryad.c4877tc/1
title: Schaeffer_BioLetts_Table1_EAG

description: Electroantennogram data on bumble bee (Bombus impatiens) antennal responses to volatile microbial metabolites. Metabolites tested are those detected in headspace from artificial nectar solutions conditioned by either the bacterium Asaia astibles or yeast Metschnikowia reukaufii.
DOI: 10.5061/dryad.dr48cf6/1
title: Understory plant cover data 2014

description: Understory plant data by percent cover, average height, and count for 24 sites across Bald Eagle and Rothrock state forests in central Pennsylvania. See Vegetation_Metadata_2014.csv for specific column descriptions and data formatting.
DOI: 10.5061/dryad.dr48cf6/2
title: Seedling_Data_2014

description: Understory tree seedling data (&lt;1 inch dbh) by height class in Rothrock and Bald Eagle state forests in central Pennsylvania. See Vegetation_Metadata_2014.csv and Species_Code_List.csv for specific column descriptions and data formatting.
DOI: 10.5061/dryad.dr48cf6/3
title: Tree_Data_2014

description: Overstory tree measurements (&gt;=5" dbh) at 24 sampling sites at Rothrock and Bald Eagle state forests in central Pennsylvania. See Vegetation_Metadata_2014.csv and Vegetation_Metadata_2014.csv for specific column descriptions and data formatting.
DOI: 10.5061/dryad.dr48cf6/4
title: Soils_Data_2014

description: Soil nutrient data for both organic and mineral soil horizons at 24 sites in Rothrock and Bald Eagle state forests in central Pennsylvania. See Soils_Metadata_2014.csv for descriptions of each column, including extraction methods (Kellogg Soil Science Laboratory, Lincoln, Nebraska, USA).
DOI: 10.5061/dryad.dr48cf6/5
title: Soils_Metadata_2014

description: Detailed descriptions of variables in Soils_Data_2014.csv
DOI: 10.5061/dryad.dr48cf6/6
title: Species_Code_List_2014

description: List of species names for abbreviation codes used in Tree_Data_2014.csv, Seedling_Data_2014.csv, and Cover_Data_204.csv
DOI: 10.5061/dryad.dr48cf6/7
title: Vegetation_Metadata_2014

description: Detailed descriptions of columns and data formatting used in Cover_Data_2014.csv, Seedling_Data_2014.csv, and Tree_Data_2014.csv
DOI: 10.5061/dryad.f2kh311/1
title: Precuration.csv

description: Measures from a sub-set of cell images for validating results from DNACrossOver. Each row corresponds to a type of bivalent measure with a manual and automated measure.
DOI: 10.5061/dryad.f2kh311/2
title: PostCuration

description: Similar dataset as the Precuration dataset after a manual validation removed bad segmentation objects.
DOI: 10.5061/dryad.f3p8j8g/1
title: Allele size_microsatellite_S.noctilio

description: Allele size of microsatellite markers in males of S. noctilio from the Western Cape and KwaZulu-Natal provinces
DOI: 10.5061/dryad.f3p8j8g/2
title: QueffelecJetal_SpaceStateModel_fig1_Rscript

description: R script for the model predicting sex ratios of Sirex noctilio in South Africa
DOI: 10.5061/dryad.gq73493/1
title: Table S1. Cars used for counting insects in the field 1997-2018 Kraghede, Denmark

description: Cars used for sampling insects
DOI: 10.5061/dryad.gq73493/2
title: TableS2Insect-Kraghede-1997-2018.2

description: Insects sampled 1997-2018
DOI: 10.5061/dryad.gq73493/3
title: Hirundines and insects

description: Hirundines and insects
DOI: 10.5061/dryad.jn013r2/1
title: Ribeiro_data

description: The files contains woody and grass data, distributed by landscape type, fire frequency and plot.
DOI: 10.5061/dryad.q3t310k/1
title: Data_Srivathsa_etal2018
DOI: 10.5061/dryad.q4b18k3/2
title: Species Composition
DOI: 10.5061/dryad.q4fm37m/1
title: Kudo&Cooper_Source Data of Figs.1-4

description: Source data of Figs.1-4 are included in each spread sheet of the excel file.
DOI: 10.5061/dryad.t4g871v/1
title: adjusted_200m_allvars

description: 200m landscape data for: Paton GD, Shoffner AV, Wilson AM, Gagné SA. The traits that predict the magnitude and spatial scale of forest bird responses to urbanization intensity.
DOI: 10.5061/dryad.t4g871v/2
title: adjusted_500m_allvars

description: 500m landscape data for: Paton GD, Shoffner AV, Wilson AM, Gagné SA. The traits that predict the magnitude and spatial scale of forest bird responses to urbanization intensity
DOI: 10.5061/dryad.t4g871v/3
title: adjusted_1km_allvars

description: 1km landscape data for: Paton GD, Shoffner AV, Wilson AM, Gagné SA. The traits that predict the magnitude and spatial scale of forest bird responses to urbanization intensity.
DOI: 10.5061/dryad.t4g871v/4
title: adjusted_2km_allvars

description: 2km landscape data for: Paton GD, Shoffner AV, Wilson AM, Gagné SA. Data from: The traits that predict the magnitude and spatial scale of forest bird responses to urbanization intensity.
DOI: 10.5061/dryad.t4g871v/5
title: adjusted_4km_allvars

description: 4km landscape data for: Paton GD, Shoffner AV, Wilson AM, Gagné SA. Data from: The traits that predict the magnitude and spatial scale of forest bird responses to urbanization intensity.
DOI: 10.5061/dryad.v8kj429/1
title: Data and code

description: The zip archive contains all the data files and R code needed to reproduce the analyses in the published paper. It also contains a readme file and a metadata file.
DOI: 10.17632/6rkhhf23yb.1
title: Data for: Benefit of wakeful resting on gist and peripheral memory retrieval in healthy younger and older adults

description: These data provide behavioural measure of Gist and Peripheral verbal memory under different post-encoding conditions (Minimal and Full Retroactive Interference)
DOI: 10.5061/dryad.31ns53c/1
title: Growth rates by age per year for each sampled tree

description: See README file.
DOI: 10.5061/dryad.31ns53c/13
title: Age, size, growth, and xylem data for individual trees at Mackay Bar

description: See README file.
DOI: 10.5061/dryad.31ns53c/2
title: Pit and growth rate data for comparison across sites.

description: See README file.
DOI: 10.5061/dryad.31ns53c/3
title: Tracheid and growth rate data for comparison across sites.

description: See README file.
DOI: 10.5061/dryad.4dq31c5/1
title: PotapovST1

description: Stable isotope data compiled from the published literature.
DOI: 10.5061/dryad.4dq31c5/2
title: PotapovST2

description: Classification and body sizes of species.
DOI: 10.5061/dryad.4dq31c5/3
title: PotapovST5

description: Selected food webs for analysis.
DOI: 10.5061/dryad.587cv26/1
title: Supplementary Material
DOI: 10.5061/dryad.6rg781m/1
title: Supplemental Document 1

description: Specifications of the blinding procedure.
DOI: 10.5061/dryad.6rg781m/2
title: Supplemental Figure 1

description: Specifications of the blinding procedure.
DOI: 10.5061/dryad.6rg781m/3
title: Supplemental Table 1

description: Specifications of the blinding procedure.
DOI: 10.5061/dryad.6rg781m/4
title: Supplemental Video 1

description: Video file of baseline sensory assessments.
DOI: 10.5061/dryad.6rg781m/5
title: Supplemental Table 2

description: Inclusion and exclusion criteria.
DOI: 10.5061/dryad.6rg781m/6
title: Supplemental Document 2

description: Supplementary data analyses.
DOI: 10.5061/dryad.72sn74q/10
title: data10_F1_Sterility_backcross_data

description: F1 sterility data (female sterility assessed via backcrosses with F1s serving as maternal parents).
DOI: 10.5061/dryad.72sn74q/11
title: Fig1b_McLauglhin_sites

description: Data used to produce Figure 1b.
DOI: 10.5061/dryad.72sn74q/12
title: Fig2_all_bootstrap_data

description: Data used to produce Figure 2 (10,000 bootstrap samples for each isolating barrier).  NOTE: "Phenology" and "F1 Sterility" barriers have multiple components.
DOI: 10.5061/dryad.72sn74q/13
title: Fig3_all_bootstrap_data

description: Data used to produce Figure 3 (10,000 bootstrap samples of RI for pre-pollination barriers in different years).
DOI: 10.5061/dryad.72sn74q/14
title: Fig4_all_bootstrap_data

description: Data used to produce Figure 4 (10,000 bootstrap samples of RI for postzygotic barriers assessed in different population pairs).
DOI: 10.5061/dryad.72sn74q/15
title: Fig5_Sbreweri_cumulative_RI_data

description: Data used to produce Figure 5 (10,000 iterations of cumulative RI for S. breweri after each isolating barrier).
DOI: 10.5061/dryad.72sn74q/16
title: Fig5_Shesperidis_cumulative_RI_data

description: Data used to produce Figure 5 (10,000 iterations of cumulative RI for S. hesperidis after each isolating barrier).
DOI: 10.5061/dryad.72sn74q/8
title: data8_F1_Viability_data

description: F1 viability (survival to flowering) data.
DOI: 10.5061/dryad.72sn74q/9
title: data9_F1_Sterility_pollen_production_data

description: F1 sterility (pollen production) data.
DOI: 10.5061/dryad.7mg3d80/1
title: transcript
DOI: 10.5061/dryad.7nq1c6s/1
title: Marmoset vocalization data

description: JammingAllData.mat contains a MATLAB structure array “SbjData” which stores the experimental data for the four subjects. Each row in “SbjData” is a subject. The first column is for low-frequency noise perturbation (and the baseline preceding it) whereas the second column is for high-frequency noise perturbation (and the baseline preceding it). “SbjData.Param” stores various parameters used in the analysis and the experiment info. For example, “exp_day” contains the day number for each experimental session. Perturbation sessions are labeled as “Jamming” in the data structures. “SbjData.Measure.FreqPrePostWin” stores the actual data, as described below for its several fields.
“Jamming” and “Baseline” contains the original recorded data for the perturbation and baseline sessions, respectively. “JammingDT” and “BaselineDT” are the detrended data. Inside these matrices, Column 1 labels separate sessions; Column 2 is the call onset time (sec); Column 4 is the fundamental frequency of the call (Hz, original or detrended); Column 6: 0 for baseline; 1 for not-perturbed, 2 for perturbed calls. “FittedTimeCourse{2}” is the fundamental frequency profile of baseline sessions [Time (s), Freq (Hz)]. “FittedTimeCourse_Jamming{2}” is the fundamental frequency profile of perturbation sessions.
DOI: 10.5061/dryad.8189524/1
title: Richardson, Ross & Smiseth

description: Data for Richardson, Ross & Smiseth in Behavioural Ecology "Food-deprivation affects egg laying and maternal care but not offspring performance in a beetle"
DOI: 10.5061/dryad.8fp561k/1
title: African fish species' traits related to climate change vulnerability

description: Collation of available data on African freshwater fish species traits gleaned from publicly available repositories (IUCN Red List, FishBase) including data on life history traits, distributions, habitat use, dietary preferences, spawning behaviour, migratory behaviour, estimates of population size, and estimates of environmental tolerances, among others. Also includes data on threats experienced, human uses, and climate change projections across each species' range as predicted by the IPCC 5th assessment report.
DOI: 10.5061/dryad.cp31tg6/1
title: Dataset1

description: Dataset1

Contains data for comparing measurements made from perched individuals to those made from photographs taken under standardised conditions.

perched.hw	= the total proportion of the isolated hindwing that is visible in perched photos
perched.tw	= the total proportion of the surface of wings that is visible in perched photos
standard.hw	= the total proportion of the hindwing surface that is pigmented from standardised photos
standard.tw = the total proportion of the surface of wings that is pigmented from standardised photos