cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5782677.v1
title: Additional file 5: Table S4. of Haemophilus is overrepresented in the nasopharynx of infants hospitalized with RSV infection and associated with increased viral load and enhanced mucosal CXCL8 responses

description: Sample OTU table. (XLSX 1629Â kb)
DOI: 10.6084/m9.figshare.5782659
title: Additional file 4: Table S3. of Haemophilus is overrepresented in the nasopharynx of infants hospitalized with RSV infection and associated with increased viral load and enhanced mucosal CXCL8 responses

description: Sample microbiota compositional table. (XLSX 247Â kb)
DOI: 10.6084/m9.figshare.5782659.v1
title: Additional file 4: Table S3. of Haemophilus is overrepresented in the nasopharynx of infants hospitalized with RSV infection and associated with increased viral load and enhanced mucosal CXCL8 responses

description: Sample microbiota compositional table. (XLSX 247Â kb)
DOI: 10.6084/m9.figshare.5782638
title: Additional file 3: Table S2. of Haemophilus is overrepresented in the nasopharynx of infants hospitalized with RSV infection and associated with increased viral load and enhanced mucosal CXCL8 responses

description: Sample sequencing data numbers and metrics. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.5782638.v1
title: Additional file 3: Table S2. of Haemophilus is overrepresented in the nasopharynx of infants hospitalized with RSV infection and associated with increased viral load and enhanced mucosal CXCL8 responses

description: Sample sequencing data numbers and metrics. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.5782629
title: Additional file 12: Table S8. of Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome

description: Non-synonymous nucleotide diversity and loss-of-function mutations among 123 Zymoseptoria tritici isolates. (XLSX 6650Â kb)
DOI: 10.6084/m9.figshare.5782629.v1
title: Additional file 12: Table S8. of Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome

description: Non-synonymous nucleotide diversity and loss-of-function mutations among 123 Zymoseptoria tritici isolates. (XLSX 6650Â kb)
DOI: 10.6084/m9.figshare.5782617
title: Additional file 11: Table S7. of Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome

description: Whole-genome sequence analyses of the 123 Zymoseptoria tritici isolates included in this study. (XLS 121Â kb)
DOI: 10.6084/m9.figshare.5782617.v1
title: Additional file 11: Table S7. of Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome

description: Whole-genome sequence analyses of the 123 Zymoseptoria tritici isolates included in this study. (XLS 121Â kb)
DOI: 10.6084/m9.figshare.5782608
title: Additional file 1: Table S1. of Haemophilus is overrepresented in the nasopharynx of infants hospitalized with RSV infection and associated with increased viral load and enhanced mucosal CXCL8 responses

description: Participant metadata and characteristics. (XLSX 37Â kb)
DOI: 10.6084/m9.figshare.5782608.v1
title: Additional file 1: Table S1. of Haemophilus is overrepresented in the nasopharynx of infants hospitalized with RSV infection and associated with increased viral load and enhanced mucosal CXCL8 responses

description: Participant metadata and characteristics. (XLSX 37Â kb)
DOI: 10.6084/m9.figshare.5782587
title: MOESM1 of Monitoring hydraulic stimulation using telluric sounding

description: Additional file 1. EDI files for both the 3D feasibility study and Paralana example.
DOI: 10.6084/m9.figshare.5782587.v1
title: MOESM1 of Monitoring hydraulic stimulation using telluric sounding

description: Additional file 1. EDI files for both the 3D feasibility study and Paralana example.
DOI: 10.6084/m9.figshare.5782545
title: Additional file 5: Table S3. of De novo assembly of the complex genome of Nippostrongylus brasiliensis using MinION long reads

description: CAZy analysis (see Excel file). (XLSX 265 kb)
DOI: 10.6084/m9.figshare.5782545.v1
title: Additional file 5: Table S3. of De novo assembly of the complex genome of Nippostrongylus brasiliensis using MinION long reads

description: CAZy analysis (see Excel file). (XLSX 265 kb)
DOI: 10.6084/m9.figshare.5782533
title: Additional file 4: Table S2. of De novo assembly of the complex genome of Nippostrongylus brasiliensis using MinION long reads

description: BLAST hits for missing USCOs (see Excel file). (XLSX 78 kb)
DOI: 10.6084/m9.figshare.5782533.v1
title: Additional file 4: Table S2. of De novo assembly of the complex genome of Nippostrongylus brasiliensis using MinION long reads

description: BLAST hits for missing USCOs (see Excel file). (XLSX 78 kb)
DOI: 10.6084/m9.figshare.5782431
title: Data.xls

description: Perception variables using Health Belief Model to investigate willingness to pay for hepatitis b vaccination in Malaysia.
DOI: 10.6084/m9.figshare.5782431.v1
title: Data.xls

description: Perception variables using Health Belief Model to investigate willingness to pay for hepatitis b vaccination in Malaysia.
DOI: 10.6084/m9.figshare.5782428
title: Aedes-predator food webs

description: Supporting data for:<br><br>Weterings, R. Umponstira, C and Buckley HL (2018) Landscape variation influences trophic cascades in dengue vector food webs. Science Advances 4: eaap9534, DOI: 10.1126/sciadv.aap9534 <br>
DOI: 10.6084/m9.figshare.5782428.v1
title: Aedes-predator food webs

description: Supporting data for:<br><br>Weterings, R. Umponstira, C and Buckley HL (2018) Landscape variation influences trophic cascades in dengue vector food webs. Science Advances 4: eaap9534, DOI: 10.1126/sciadv.aap9534 <br>
DOI: 10.6084/m9.figshare.5782380
title: SUT models and t-way tests for Flex, Grep, and Make

description: * TestModel: SUT (System Under Test) models for projects flex, grep, and make.<br><br>.tsl: Test specification files in SIR repository. <br>.sut: Parameters and values without constraints, made from .tsl files.<br>.calot: Input models in Calot[1] format, made from .tsl files. Single and error parameter values are omitted.<br>.ts: exhaustive test cases in SIR repository.<br>.frame: executable test cases in SIR repository.<br><br>* CombCS: t-way test cases.<br><br>1-, 2-, 3-, & 4-way test cases by PICT, ACTS, and Calot, generated using t-way testing tool Calot.<br><br>* For experiments in [2], we translated t-way test cases in CombCS to corresponding (executable) test cases in .frame format (the omitted parameter values are revived), and investigated code coverage of test cases. <br><br>[1] Akihisa Yamada, Armin Biere, Cyrille Artho, Takashi Kitamura, and Eun-Hye Choi, "Greedy Combinatorial Test Case Generation Using Unsatisfiable Cores," In Proc. of 31st IEEE/ACM International Conference on Automated Software Engineering (ASE 2016), pp. 614-624, September 2016.<br><br>[2] Eun-Hye Choi, Osamu Mizuno, and Yifan Hu, "Code Coverage Analysis of Combinatorial Testing," In Proc. of 4th International Workshop on Quantitative Approaches to Software Quality（QUASoQ 2016), in conjunction with APSEC 2016, pp. 34--40 December 2016.<br><br>
DOI: 10.6084/m9.figshare.5782380.v2
title: SUT models and t-way tests for Flex, Grep, and Make

description: * TestModel: SUT (System Under Test) models for projects flex, grep, and make.<br><br>.tsl: Test specification files in SIR repository. <br>.sut: Parameters and values without constraints, made from .tsl files.<br>.calot: Input models in Calot[1] format, made from .tsl files. Single and error parameter values are omitted.<br>.ts: exhaustive test cases in SIR repository.<br>.frame: executable test cases in SIR repository.<br><br>* CombCS: t-way test cases.<br><br>1-, 2-, 3-, & 4-way test cases by PICT, ACTS, and Calot, generated using t-way testing tool Calot.<br><br>* For experiments in [2], we translated t-way test cases in CombCS to corresponding (executable) test cases in .frame format (the omitted parameter values are revived), and investigated code coverage of test cases. <br><br>[1] Akihisa Yamada, Armin Biere, Cyrille Artho, Takashi Kitamura, and Eun-Hye Choi, "Greedy Combinatorial Test Case Generation Using Unsatisfiable Cores," In Proc. of 31st IEEE/ACM International Conference on Automated Software Engineering (ASE 2016), pp. 614-624, September 2016.<br><br>[2] Eun-Hye Choi, Osamu Mizuno, and Yifan Hu, "Code Coverage Analysis of Combinatorial Testing," In Proc. of 4th International Workshop on Quantitative Approaches to Software Quality（QUASoQ 2016), in conjunction with APSEC 2016, pp. 34--40 December 2016.<br><br>
DOI: 10.6084/m9.figshare.5782380.v1
title: SUT models for Flex, Grep, and Make

description: SUT (System Under Test) models to create test cases. <br>Models for projects flex, grep, and make, which are made from corresponding test speification (.tsl) files in SIR repository. <br>.calot: Input models to t-way test generation tool Calot. <br>.model: Parameters and values without constraints.<br>.dimacs: SUT constraints.<br>
DOI: 10.6084/m9.figshare.5782221
title: Efficiency of Bayesian QTL mapping with full-sib progeny

description: Data files used in the study "<b>Efficiency of Bayesian QTL mapping with full-sib progeny</b>". Details on the files content are in the File description SSR.doc and File description SNP.doc files.
DOI: 10.6084/m9.figshare.5782206
title: Catchment-averaged Soil Moisture and Runoff Output from the NASA GEOS Catchment Land Surface Model

description: Overview:<br>Matlab file containing 1) daily-averaged surface soil moisture ("SM_daily_sz"), 2) daily-averaged root-zone soil moisture ("SM_daily_rz"), 3) daily-total surface runoff ("srun_daily") and 4) daily-total baseflow runoff ("bf_daily") generated by the NASA Goddard Earth Observing System (GEOS) Catchment land surface model (CLSM) for 16 medium-scale (2000 to 10,000 km<sup>2</sup>) hydrologic basins within the south-central United States. <br><br>For more information on the GEOS-CLSM simulations see Section 2a of the following article:<br>Reichle, R. et al., Assessment of the SMAP Level-4 Surface and Root-Zone Soil Moisture Product Using In Situ Measurements. Journal of Hydrometeorology, 18, 2621–2645, doi:10.1175/JHM-D-17-0063.1, 2017.<br><br>Timing notes: <br>Day 1 = 31 March 2015<br>Day 793 = 1 May 2017<br>Day is 0 to 23:59 UTC<br><br>Data units:<br>Soil moisture is given in daily-averaged volumetric soil moisture (m<sup>3</sup>/m<sup>3</sup>)<br>Runoff is given in total mm/day.<br><br>Spatial domain:<br>For spatial details on the basins see Table 1 and Figure 1 in:<br>Crow, W.T., Chen, F., Reichle, R.H., and Liu, Q. L Band Microwave Remote Sensing and Land Data Assimilation Improve the Representation of Prestorm Soil Moisture Conditions for Hydrologic Forecasting. <i>Geophysical Research Letters</i>, 44(11), 5495–5503, doi:10.1002/2017GL073642, 2017.<br><br>Contact: Wade.Crow@ars.usda.gov<br><br>
DOI: 10.6084/m9.figshare.5782197
title: Full Annotated LC QuAD dataset

description: Manually fully-annotated LC-QuAD dataset, to create a gold label data set for entity and relation linking over dbpedia. For each question, the keywords are classified as entity or predicate. Also these keywords are mapped to the uri of knowledge graph (dbpedia) corresponding to the SPARQL query.<br>
DOI: 10.6084/m9.figshare.5781723
title: American Evaluation Association Annual Conference 2017 - Research Technology and Development track

description: Presentations for the Research, Technology, and Development track of the American Evaluation Association annual meeting in 2017.
DOI: 10.6084/m9.figshare.5781723.v1
title: American Evaluation Association Annual Conference 2017 - Research Technology and Development track

description: Presentations for the Research, Technology, and Development track of the American Evaluation Association annual meeting in 2017.
DOI: 10.6084/m9.figshare.5778243
title: Effect of Task Load Interventions on Fatigue in Emergency Medical Services Personnel and Other Shift Workers: A Systematic Review

description: <b>Background</b>: Modifying the task load of Emergency Medical Services (EMS) personnel may mitigate fatigue, sleep quality and fatigue related risks. A review of the literature addressing task load interventions may benefit EMS administrators as they craft policies related to mitigating fatigue. We conducted a systematic review of the peer-reviewed literature to address the following question: “In EMS personnel, do task load interventions mitigate fatigue, mitigate fatigue-related risks, and/or improve sleep?” (PROSPERO 2016:CRD42016040114). <b>Methods</b>: We performed a systematic review of the literature that described use of randomized controlled trials, quasi-experimental studies, and observational study designs. We retained and reviewed research that involved EMS personnel or similar shift worker groups 18 years of age and older. Studies of ‘healthy volunteers’ and non-shift worker populations were excluded. Studies were included where the methodology of the study implied a theoretical framework of task load (or workload) affecting fatigue, and then fatigue related outcomes. Outcomes of interest included personnel safety, patient safety, personnel performance, acute fatigue, and cost to system. We used the Grading of Recommendations, Assessment, Development, and Evaluation (GRADE) methodology to summarize findings and assess quality of evidence from very low to high quality. <b>Results</b>: The search strategy yielded 3,394 unique records resulting in 58 records included as potentially eligible. An additional 69 studies were reviewed in full following searches of bibliographies. We detected wide variation in the description and measurement of task load in the retained and excluded research. Among 127 potentially relevant studies reviewed in full, five were judged eligible. None of the retained studies reported findings germane to personnel safety, patient safety, or cost to system. We judged most studies to have serious or very serious risk of bias. <b>Conclusions</b>: The effect of task load interventions on fatigue, fatigue-related risks, and/or sleep quality was not estimable and the overall quality of evidence was judged low or very low. There was considerable heterogeneity in how task load was defined and measured.
DOI: 10.6084/m9.figshare.5778243.v1
title: Effect of Task Load Interventions on Fatigue in Emergency Medical Services Personnel and Other Shift Workers: A Systematic Review

description: <b>Background</b>: Modifying the task load of Emergency Medical Services (EMS) personnel may mitigate fatigue, sleep quality and fatigue related risks. A review of the literature addressing task load interventions may benefit EMS administrators as they craft policies related to mitigating fatigue. We conducted a systematic review of the peer-reviewed literature to address the following question: “In EMS personnel, do task load interventions mitigate fatigue, mitigate fatigue-related risks, and/or improve sleep?” (PROSPERO 2016:CRD42016040114). <b>Methods</b>: We performed a systematic review of the literature that described use of randomized controlled trials, quasi-experimental studies, and observational study designs. We retained and reviewed research that involved EMS personnel or similar shift worker groups 18 years of age and older. Studies of ‘healthy volunteers’ and non-shift worker populations were excluded. Studies were included where the methodology of the study implied a theoretical framework of task load (or workload) affecting fatigue, and then fatigue related outcomes. Outcomes of interest included personnel safety, patient safety, personnel performance, acute fatigue, and cost to system. We used the Grading of Recommendations, Assessment, Development, and Evaluation (GRADE) methodology to summarize findings and assess quality of evidence from very low to high quality. <b>Results</b>: The search strategy yielded 3,394 unique records resulting in 58 records included as potentially eligible. An additional 69 studies were reviewed in full following searches of bibliographies. We detected wide variation in the description and measurement of task load in the retained and excluded research. Among 127 potentially relevant studies reviewed in full, five were judged eligible. None of the retained studies reported findings germane to personnel safety, patient safety, or cost to system. We judged most studies to have serious or very serious risk of bias. <b>Conclusions</b>: The effect of task load interventions on fatigue, fatigue-related risks, and/or sleep quality was not estimable and the overall quality of evidence was judged low or very low. There was considerable heterogeneity in how task load was defined and measured.
DOI: 10.6084/m9.figshare.5778237
title: Shorter Versus Longer Shift Durations to Mitigate Fatigue and Fatigue-Related Risks in Emergency Medical Services Personnel and Related Shift Workers: A Systematic Review

description: <b>Background</b>: This study comprehensively reviewed the literature on the impact of shorter versus longer shifts on critical and important outcomes for Emergency Medical Services (EMS) personnel and related shift worker groups. <b>Methods</b>: Six databases (e.g., PubMed/MEDLINE) were searched, including one website. This search was guided by a research question developed by an expert panel <i>a priori</i> and registered with the PROSPERO database of systematic reviews (2016:CRD42016040099). The critical outcomes of interest were patient safety and personnel safety. The important outcomes of interest were personnel performance, acute fatigue, sleep and sleep quality, retention/turnover, long-term health, burnout/stress, and cost to system. Screeners worked independently and full-text articles were assessed for relevance. Data abstracted from the retained literature were categorized as favorable, unfavorable, mixed/inconclusive, or no impact toward the shorter shift duration. This research characterized the evidence as very low, low, moderate, or high quality according to the Grading of Recommendations, Assessment, Development, and Evaluation (GRADE) methodology. <b>Results</b>: The searched yielded <i>n</i> = 21,674 records. Of the 480 full-text articles reviewed, 100 reported comparisons of outcomes of interest by shift duration. We identified 24 different shift duration comparisons, most commonly 8 hours versus 12 hours. No one study reported findings for all 9 outcomes. Two studies reported findings linked to both critical outcomes of patient and personnel safety, 34 reported findings for one of two critical outcomes, and 64 did not report findings for critical outcomes. Fifteen studies were grouped to compare shifts &lt;24 hours versus shifts ≥24 hours. None of the findings for the critical outcomes of patient and personnel safety were categorized as unfavorable toward shorter duration shifts (&lt;24 hours). Nine studies were favorable toward shifts &lt;24 hours for at least one of the 7 important outcomes, while findings from one study were categorized as unfavorable. Evidence quality was low or very low. <b>Conclusions</b>: The quality of existing evidence on the impact of shift duration on fatigue and fatigue-related risks is low or very low. Despite these limitations, this systematic review suggests that for outcomes considered critical or important to EMS personnel, shifts &lt;24 hours in duration are more favorable than shifts ≥24 hours.
DOI: 10.6084/m9.figshare.5778237.v1
title: Shorter Versus Longer Shift Durations to Mitigate Fatigue and Fatigue-Related Risks in Emergency Medical Services Personnel and Related Shift Workers: A Systematic Review

description: <b>Background</b>: This study comprehensively reviewed the literature on the impact of shorter versus longer shifts on critical and important outcomes for Emergency Medical Services (EMS) personnel and related shift worker groups. <b>Methods</b>: Six databases (e.g., PubMed/MEDLINE) were searched, including one website. This search was guided by a research question developed by an expert panel <i>a priori</i> and registered with the PROSPERO database of systematic reviews (2016:CRD42016040099). The critical outcomes of interest were patient safety and personnel safety. The important outcomes of interest were personnel performance, acute fatigue, sleep and sleep quality, retention/turnover, long-term health, burnout/stress, and cost to system. Screeners worked independently and full-text articles were assessed for relevance. Data abstracted from the retained literature were categorized as favorable, unfavorable, mixed/inconclusive, or no impact toward the shorter shift duration. This research characterized the evidence as very low, low, moderate, or high quality according to the Grading of Recommendations, Assessment, Development, and Evaluation (GRADE) methodology. <b>Results</b>: The searched yielded <i>n</i> = 21,674 records. Of the 480 full-text articles reviewed, 100 reported comparisons of outcomes of interest by shift duration. We identified 24 different shift duration comparisons, most commonly 8 hours versus 12 hours. No one study reported findings for all 9 outcomes. Two studies reported findings linked to both critical outcomes of patient and personnel safety, 34 reported findings for one of two critical outcomes, and 64 did not report findings for critical outcomes. Fifteen studies were grouped to compare shifts &lt;24 hours versus shifts ≥24 hours. None of the findings for the critical outcomes of patient and personnel safety were categorized as unfavorable toward shorter duration shifts (&lt;24 hours). Nine studies were favorable toward shifts &lt;24 hours for at least one of the 7 important outcomes, while findings from one study were categorized as unfavorable. Evidence quality was low or very low. <b>Conclusions</b>: The quality of existing evidence on the impact of shift duration on fatigue and fatigue-related risks is low or very low. Despite these limitations, this systematic review suggests that for outcomes considered critical or important to EMS personnel, shifts &lt;24 hours in duration are more favorable than shifts ≥24 hours.