cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.frtcae
title: Occurrence Download

description: A dataset containing 2241 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Greece",
 "MediaType is Audio",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 2241 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043298-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xhq28n
title: Occurrence Download

description: A dataset containing 3570 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((26.18571 50.58888, 26.29826 50.58888, 26.29826 50.65605, 26.18571 50.65605, 26.18571 50.58888))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 3570 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043300-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13347826
title: HyperDehazing: Hazy HSI images (Scenes 41-60)
DOI: 10.5281/zenodo.13347827
title: HyperDehazing: Hazy HSI images (Scenes 41-60)
DOI: 10.15468/dl.ux4zs9
title: Occurrence Download

description: A dataset containing 1510 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 "TaxonKey is Catocala habilis Grote, 1872"
 ]
}

 The dataset includes 1510 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043301-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13893010
title: Genomic implications of the repeated shift to self-fertilization across a species' geographic distribution

description: This is the dataset for the publication

Genomic implications of the repeated shift to self-fertilization across a species’ geographic distribution

by Kay Lucek, Jana Flury, Yvonne Willi

published in the Journal of Heredity 10.1093/jhered/esae046

Abstract

The ability to self-fertilize often varies among closely related hermaphroditic plant species, though, variation can also exist within species. In the North American Arabidopsis lyrata, the shift from self-incompatibility (SI) to selfing established in multiple regions independently, mostly since recent postglacial range expansion. This has made the species an ideal model for the investigation of the genomic underpinnings of the breakdown of SI and its population genetic consequences. By comparing nearby selfing and outcrossing populations across the entire species’ geographic distribution, we investigated variation at the self-incompatibility (S-)locus and across the genome. Furthermore, a diallel crossing experiment on one mixed-mating population was performed to gain insight into the inheritance of mating system variation. We confirmed that the breakdown of SI had evolved in several S-locus backgrounds. The diallel suggested the involvement of biparental contributions with dominance relations. Though, the population-level genome-wide association study did not single out clear-cut candidate genes but several regions with one near the S-locus. On the implication side, selfing as compared to outcrossing populations had less than half of the genomic diversity, while the number and length of runs of homozygosity (ROHs) scaled with the degree of inbreeding. Selfing populations with a history of long expansion had the longest ROHs. The results highlight that mating system shift to selfing, its genetic underpinning and the likely negative genomic consequences for evolutionary potential can be strongly interlinked with past range dynamics.

 

 

Please read the respective readme files for each dataset.
DOI: 10.5281/zenodo.13893011
title: Genomic implications of the repeated shift to self-fertilization across a species' geographic distribution

description: This is the dataset for the publication

Genomic implications of the repeated shift to self-fertilization across a species’ geographic distribution

by Kay Lucek, Jana Flury, Yvonne Willi

published in the Journal of Heredity 10.1093/jhered/esae046

Abstract

The ability to self-fertilize often varies among closely related hermaphroditic plant species, though, variation can also exist within species. In the North American Arabidopsis lyrata, the shift from self-incompatibility (SI) to selfing established in multiple regions independently, mostly since recent postglacial range expansion. This has made the species an ideal model for the investigation of the genomic underpinnings of the breakdown of SI and its population genetic consequences. By comparing nearby selfing and outcrossing populations across the entire species’ geographic distribution, we investigated variation at the self-incompatibility (S-)locus and across the genome. Furthermore, a diallel crossing experiment on one mixed-mating population was performed to gain insight into the inheritance of mating system variation. We confirmed that the breakdown of SI had evolved in several S-locus backgrounds. The diallel suggested the involvement of biparental contributions with dominance relations. Though, the population-level genome-wide association study did not single out clear-cut candidate genes but several regions with one near the S-locus. On the implication side, selfing as compared to outcrossing populations had less than half of the genomic diversity, while the number and length of runs of homozygosity (ROHs) scaled with the degree of inbreeding. Selfing populations with a history of long expansion had the longest ROHs. The results highlight that mating system shift to selfing, its genetic underpinning and the likely negative genomic consequences for evolutionary potential can be strongly interlinked with past range dynamics.

 

 

Please read the respective readme files for each dataset.
DOI: 10.15468/dl.k2qzfz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((19.74539 3.211453, 19.81569 3.211453, 19.81569 3.276194, 19.74539 3.276194, 19.74539 3.211453))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043302-240906103802322/datasets/export for details.
DOI: 10.6084/m9.figshare.27152538
title: Sequencing of RNA data in DR patients and healthy controls

description: We collected whole blood samples from 10 individuals with DR and 10 normal controls (NCs) for transcriptome sequencing. Following quality control and preprocessing of the sequencing data, differential expression analysis was conducted to identify differentially expressed genes (DEGs) between the DR and NC groups. Candidate genes were then selected by intersecting these DEGs with key module genes identified through weighted gene co-expression network analysis. These candidate genes were subjected to mendelian randomization (MR) analysis, then least absolute shrinkage and selection operator analysis to pinpoint key genes. The diagnostic utility of these key genes was evaluated using receiver operating characteristic curve analysis, and their expression levels were examined. Additional analysis, including nomogram construction, gene set enrichment analysis, drug prediction and molecular docking, were performed to investigate the functions and molecular mechanisms of the key genes.
DOI: 10.6084/m9.figshare.27152538.v1
title: Sequencing of RNA data in DR patients and healthy controls

description: We collected whole blood samples from 10 individuals with DR and 10 normal controls (NCs) for transcriptome sequencing. Following quality control and preprocessing of the sequencing data, differential expression analysis was conducted to identify differentially expressed genes (DEGs) between the DR and NC groups. Candidate genes were then selected by intersecting these DEGs with key module genes identified through weighted gene co-expression network analysis. These candidate genes were subjected to mendelian randomization (MR) analysis, then least absolute shrinkage and selection operator analysis to pinpoint key genes. The diagnostic utility of these key genes was evaluated using receiver operating characteristic curve analysis, and their expression levels were examined. Additional analysis, including nomogram construction, gene set enrichment analysis, drug prediction and molecular docking, were performed to investigate the functions and molecular mechanisms of the key genes.
DOI: 10.15468/dl.72dd9w
title: Occurrence Download

description: A dataset containing 632 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 "TaxonKey is Hericium abietis (Weir ex Hubert) K.A.Harrison"
 ]
}

 The dataset includes 632 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043303-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13351754
title: HyperDehazing: Hazy HSI images (Scenes 81-100)
DOI: 10.5281/zenodo.13351755
title: HyperDehazing: Hazy HSI images (Scenes 81-100)
DOI: 10.15468/dl.65aqwc
title: Occurrence Download

description: A dataset containing 620 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 "TaxonKey is Catocala herodias Strecker, 1876"
 ]
}

 The dataset includes 620 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043304-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gmjtk8
title: Occurrence Download

description: A dataset containing 1798 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((25.8785 48.23117, 26.00712 48.23117, 26.00712 48.35374, 25.8785 48.35374, 25.8785 48.23117))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 1798 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043305-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9552318
title: e-IPO Indonesia Data - Investment
DOI: 10.15468/dl.9w2qhg
title: Occurrence Download

description: A dataset containing 2861 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 "TaxonKey is Hericium americanum Ginns"
 ]
}

 The dataset includes 2861 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043306-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xycxfe
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((20.3435 -9.706846, 20.44447 -9.706846, 20.44447 -9.633657, 20.3435 -9.633657, 20.3435 -9.706846))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 25 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043308-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ccdjs9
title: Occurrence Download

description: A dataset containing 7092 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 "TaxonKey is Catocala ilia Cramer"
 ]
}

 The dataset includes 7092 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043307-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.57qsx3
title: Occurrence Download

description: A dataset containing 16903 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 "TaxonKey is Hericium coralloides (Scop.) Pers."
 ]
}

 The dataset includes 16903 records from 227 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043309-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3tjefm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chlorodendrophyceae",
 "HasCoordinate is true",
 "Country is one of (Portugal)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0232391-210914110416597/datasets/export for details.
DOI: 10.15468/dl.3vezhv
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Echinaster parvispinus A.H.Clark, 1916"
 ]
}

 The dataset includes 66 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027645-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ypwmq
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Allocasuarina huegeliana (Miq.) L.A.S.Johnson",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 115 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039161-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c485rf
title: Occurrence Download

description: A dataset containing 3699 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lonicera japonica Thunb.",
 "Year 1950-2022"
 ]
}

 The dataset includes 3699 records from 248 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0232385-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v6pdpd
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calceolaria flavovirens C.Ehrh."
 ]
}

 The dataset includes 12 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0114785-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dw3kik
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "TaxonKey is Panthera onca (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 44 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048661-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x8wyk8
title: Occurrence Download

description: A dataset containing 19245 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anthozoa",
 "HasCoordinate is true",
 "Country is one of (Norway)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 19245 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230371-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eragmy
title: Occurrence Download

description: A dataset containing 6824 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "TaxonKey is Ixodida"
 ]
}

 The dataset includes 6824 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005051-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u492bk
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthoclymeniidae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 65 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017509-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pf2qp3
title: Occurrence Download

description: A dataset containing 7296 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tremarctos ornatus (F.G.Cuvier, 1825)"
 ]
}

 The dataset includes 7296 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0283363-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c6x8nd
title: Occurrence Download

description: A dataset containing 144429 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Muricidae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 144429 records from 373 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001549-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ghdr7q
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Wigandia crispa (Ruiz & Pav.) Kunth"
 ]
}

 The dataset includes 84 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034354-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k9tt5z
title: Occurrence Download

description: A dataset containing 19245 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anthozoa",
 "HasCoordinate is true",
 "Country is one of (Norway)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 19245 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230376-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hjjqjp
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Wilbrandia glaziovii Cogn."
 ]
}

 The dataset includes 44 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034357-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.appbrz
title: Occurrence Download

description: A dataset containing 1715185 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is NBIS Records to December 2016"
 ]
}

 The dataset includes 1715185 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013771-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nw3dxf
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Labyrinthulea",
 "HasCoordinate is true",
 "Country is one of (Portugal)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 30 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0232415-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gll2nh
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptuca subcylindrica (Stimpson, 1859)"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017223-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vjvdje
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Macaca munzala Sinha, Datta, Madhusudan & Mishra, 2005"
 ]
}

 The dataset includes 51 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013939-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.