cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/d54gcxz9c5.2
title: Fraxinus nigra tree-ring dataset for dendrohydrology study in the Lake Duparquet, and reconstruction of the Harricana River spring discharge, Québec, Canada.

description: Dataset include earlywood vessels and tree-ring width chronologies derived from black ash (Fraxinus nigra Marsh.) trees growing in Lake Duparquet in eastern boreal Canada (Québec) reported in “Multi-century tree-ring anatomical evidence reveals increasing frequency and magnitude of spring discharge and floods in eastern boreal Canada” published in “Global and Planetary Change” by Nolin et al., 2021. DUPARQUET_Chronologies.csv, as in Figure 2, the 12 anatomical and ring-width chronologies developed for Lake Duparquet to reconstruct Harricana River spring discharge ; DUPARQUET_lat_lon.kml, the coordinate data for each station sampled on Lake Duparquet ; HARRICANA_rec&cal.csv, as in Figure 3A, the instrumental and reconstructed Harricana River spring discharge for the two models REC1 and REC2 ; metadatas.txt, a set of self-explanatory instructions and descriptions for data files. All other data are available upon request to the corresponding author at alexandreflorent.nolin@uqat.ca (institutional email), alexandreflorent.nolin@gmail.com (permanent email).
DOI: 10.17632/djrjbxzxd8.1
title: Stress-Induced Growth Rate Reduction Restricts Metabolic Resource Utilization to Modulate Osmo-Adaptation Time

description: Provided here is the .xls annotated source data used to generate all figures included in the manuscript. When we studied this interplay between cell cycle and stress response in the S. cerevisiae hyperosmotic shock response (HOG), we found that decoupling the stress response program from the cell cycle machinery in a mutant background led to an adaptive stress response that was substantially accelerated compared to the wild type strain. We pursued this observation mechanistically to uncover that stress-induced growth slowdown tapered the flux of internal carbon sources, specifically glycogen into glycerol. By contrast, concomitant growth progression diverted a surplus of glycogen catabolism products into the stress adaptation program. We then went further, asking why a wild type cell would ration its metabolic resources, mediated through cell cycle control, even under acute stress. Our experiments uncovered a fitness tradeoff that makes this rationing of resources vitally important under repeated stress.
DOI: 10.17632/b7zcgmmwx4.2
title: A Brazilian dataset of symptomatic patients for screening the risk of COVID-19

description: The original Brazilian COVID-19 dataset (from the 26 Brazilian states and the Federal District) included information about tested patients, containing early-stage symptoms, comorbidities, demographics information, and symptoms description. The patients were tested by applying viral or antibody tests. We preprocessed the dataset by selecting only completed tests, being marked as positive or negative, applied string matching algorithms to correct some inconsistencies, and removed rows with duplicated instances and asymptomatic patients. We also focused on the most frequent and relevant demographics information and reported early-stage symptoms to select features, and balanced the data considering positive and negative cases by random undersampling using the NearMiss algorithm. The preprocessing resulted in a dataset with 2,674 patients. The reduction in the number of patients from 55,676 to 2,674 occurred due to the asymptomatic patients, duplicated data, few reported symptoms by some patients, and the need for information about the dates of symptoms onset and testing. Using this dataset, we implemented and evaluated supervised machine learning models for COVID-19 detection in Brazil based on early-stage symptoms and basic personal information.
DOI: 10.17632/9kz6dnrcb6.1
title: Assessing the impact of Sars-CoV-2 on water consumption in São Paulo State, Brazil

description: The pandemic caused by Sars-CoV-2 in 2020 led to a significant change in behaviors, mainly because of the quarantine to avoid the spread of the virus. Measures affected both economic activities and citizens´ behaviors as they developed more intense hygiene habits to avoid contamination and switched to home office. These exceptional behaviors also affect the way that water is consumed and need to be fully understood to manage supply systems. Therefore, this study aims to investigate changes in residential and commercial water consumption in 31 municipalities in the State of São Paulo during the Sars-CoV-2. To do this, the expected consumption for 2020 was forecasted using the Holt-Winters Multiplicative method and compared to the data observed for the same period. In addition, we compared monthly records of new contaminations to establish a comparison between the number of infections and changes in water consumption. The results show an average difference between forecasted and observed consumption equal to + 6.23% and -18.59% for residential and commercial activities, respectively. For residential consumption, consumption per capita increased at the rate of 8.44 L.person-1.day-1. The changes in consumption seem to be a consequence of hygiene habits, social distancing and the closing of non-essential services in commerce.
DOI: 10.17632/cv9cfj39b7.1
title: Syringe Pump Extruder and Curing System for 3D Printing of Photopolymers

description: Development of new additive manufacturing materials often requires the production of several batches of relatively large volumes in order to print and test objects. This can be difficult for many materials that are expensive or difficult to produce in large volumes on the laboratory scale. Bioprinter systems are advantageous in this regard, however, commercial systems are expensive or do not have the ability to use photopolymers. Herein, we outline a Syringe Pump Extruder and Curing System (SPECS) modification for inexpensive filament-based 3D printers which enables the use of standard bioplotter materials and photopolymers. The system is capable of using multiple syringe volumes and needle sizes that can be quickly and easily exchanged. The SPECS modification is demonstrated using a Prusa i3 mk3 fused filament fabrication printer to print several 3D objects and films using stereolithography (SLA) photopolymer resin. Geometric accuracy in the X, Y, and Z directions was ±0.1 mm using a 5 mL syringe, 22-gauge needle, and commercial SLA resin. The SPECS system could be of great benefit for laboratories pursing material development in the area of additive manufacturing. This repository includes diagrams, assembly instructions, STL models of components to be 3D printed, a configuration file for the slicing software used in this conversion, and a full CAD model of the system outlined in the HardwareX submission.
DOI: 10.17632/pwfhb42jgc.1
title: Chronic Hand Eczema, learning from clinical characterization, aetiology, concomitant foot eczema and polysensitization
DOI: 10.17632/476w883p7y.1
title: Data for: Peninsular Malaysia transitional geodynamic process from Gondwana to Pangaea: New constraints from 500-200 Ma magmatic zircon U-Pb ages and Hf isotopic compositions

description: Peninsular Malaysia 500-200 Ma magmatic zircon U-Pb dating (17 samples) and Lu-Hf isotope composition (30 samples) data for "Peninsular Malaysia transitional geodynamic process from Gondwana to Pangaea: New constraints from 500-200 Ma magmatic zircon U-Pb ages and Hf isotopic compositions". Data were obtained using laser ablation (LA) system and inductively coupled plasma mass spectrometry (ICP-MS).
DOI: 10.17632/5c97xjmcw2.1
title: Dataset for "Kinematic evaluation of patients with chronic obstructive pulmonary disease during the 6-min walk test"

description: A total of 41 patients with COPD of both sexes were evaluated according to established criteria. The inclusion criteria were age ≥40 years, a smoking history of at least 10 pack-years, a post-bronchodilator forced expiratory volume in 1 s (FEV1)/forced vi- tal capacity (FVC) &lt; 0.70 (GOLD, 2020), and no participation in a pulmonary rehabilitation programme in the last 3 months. The classification of airflow limitation severity was based on post-bronchodilator FEV1. Among the 41 patients with COPD who were evaluated for inclusion in the study, 5 were excluded due to difficulty walking (n = 2), reported osteoarticular disease (n = 2), and chronic oxygen use (n = 1); 36 participants remained for analysis. A control group comprising 19 participants matched for sex, age, weight, height, and body mass index (BMI) was also evaluated. To be included in this group, participants could not be considered “very active” according to the International Physical Activity Questionnaire (IPAQ). The 6MWT was performed in a 10-m long flat corridor (between-pylon distance = 9 m), which is the minimal walkway length for this test (Almeida et al., 2020; Beekman et al., 2014), according to methods developed in a feasibility study (Saraiva et al., 2018). During the test, Qualisys Track Motion 2.4 software (Qualisys, Gothenburg, Sweden) and a system of four infrared cameras (ProReflex MCU 240; Qualisys, Gothenburg, Sweden) were used for the three-dimensional capture of helmet movement (Y: medial-lateral, X: anteroposterior, Z: vertical height). As in the feasibility study (Saraiva et al., 2018), the acquisition system was calibrated before each session using the manufacturer's equipment (wand length = 749.4 mm), procedure, and soft- ware; calibrations were repeated when necessary until the measurement errors for the location of the helmet were &lt;1.0mm in all directions.
DOI: 10.17632/vcn7gmbsy3.1
title: The Influence of Psychoeducation of Disclosure and Shame Surrounding Postpartum Intrusive Thoughts

description: Data examined whether women who had experienced postpartum intrusive thoughts of intentional harm (PPITIH) were more likely to disclose these thoughts and were less likely to have shame about these thoughts after being exposed to psychoeducation about PPITIH.
DOI: 10.17632/nhhmrw79z9.1
title: Neural correlates of goal-directed and non-goal-directed movements

description: Dataset for Sendhilnathan et al., 2021 PNAS
DOI: 10.17632/mj8sxgfzyj.1
title: Digital Data Amount (DDA) - Data Base

description: Data base of digital water from multiple precipitation sources in the São Paulo State, Brazil.
DOI: 10.17632/xx3zxj9cjb.3
title: Nanoscale variations in natural amorphous and nanocrystalline weathering products in mafic to intermediate volcanic terrains on Earth: Implications for amorphous detections on Mars

description: This study examined the compositions and structures of amorphous and nanocrystalline weathering products in Mars-relevant mafic to intermediate volcanic terrains altered under different climates and environments. The compositions and structures of terrestrial sedimentary amorphous and nanocrystalline materials could help constrain past weathering and diagenetic conditions on Mars, but relationships between their properties and formation conditions are still largely unknown. The tables in this data set show the individual compositions measured using TEM/EDS spot analyses, and serve as supplemental materials to figures shown in the corresponding manuscript. TEM analyses were performed using an FEI Talos F200X Scanning TEM operated at 200 kV accelerating voltage with a field emission source and a Super-X windowless energy dispersive X-ray spectroscopy (EDS) detector system with silicon drift detector technology. Elemental abundances were converted to wt.% oxide, and were normalized without Cu or C because of contribution from the TEM grids.
DOI: 10.17632/ff7btfxn4x.1
title: Predictors of periodontal and caries related perinatal oral healthcare: Investigation of Dentists’ practices

description: Raw Data for the study titled 'Predictors of periodontal and caries related perinatal oral healthcare: Investigation of Dentists’ practices'
DOI: 10.17632/mvz2jjz5s3.1
title: Physical assessment skills by critical-care nurses

description: 1. Research hypothesis:- i) There is no correlation between nurses' characteristics and the application of physical assessment skills 2. This dataset consists of:- i) Characteristics data of nurses, ii) Frequency of applied physical assessment skills, iii) Physical assessment time occurrence 3. This data was interpreted as follow:- i) The characteristics of nurses was descriptively analyzed ii) The frequency of applied physical assessment skills was summed to obtain the percentage. Answers of 5 and 4 were kept at their respective scores, answers of 3 and 2 were re-categorized into the same score, answers of 1 and 0 were re-categorized into the same score. iii) The frequency of physical assessment time occurrence were summed to obtain the percentage.
DOI: 10.17632/h9sdh98tg5.1
title: Perception of medical students regarding teaching in an integrated system

description: A self-constructed online questionnaire was distributed amongst medical students from a single institute as a pilot study. Different questions were asked to assess their perception regarding integrated medical education. It was analyzed through SPSS 21.
DOI: 10.17632/9np8rkwxz6.2
title: Monte Carlo simulation data for the failure of Hi-Nicalon bundles by slow crack growth introducing inhomogeneous fiber stress

description: The data are related to a Data in Brief article itself complementing a research letter about the prediction of time to failure scatter for Hi-Nicalon SiC-based multifilament tows under static fatigue conditions at intermediate temperature and ambient air. A Monte Carlo algorithm is shared simulating this variability on the following concept: combine the filament strength and applied stress distributions, the latter being related to fiber slack, under a deterministic lifetime prediction model. The ‘Virtual endurance diagram HI-Ni.xlsx’ file gathers thousands of simulations used to build the virtual stress-time to failure endurance diagram. This latter reveals the hierarchical scale effect affecting the stress exponent, discussed in the related article. Finally the ‘Data Hi-Ni virtual lifetime.xlsx’ file combines the properties attributed to critical filaments, aiming at identifying the key parameters piloting the simulated lifetime variability and the scale effect.
DOI: 10.17632/s5cngbxmy7.1
title: Genetic variants and haplotypes in the renin-angiotensin system could affect bleeding complications among Korean mechanical heart valve patients on warfarin

description: This study aimed to investigate the effects of genetic variants and haplotypes in the renin–angiotensin system (RAS) on warfarin-induced bleeding complications at therapeutic international normalized ratios (INRs) among Korean patients with mechanical heart valve replacements.
DOI: 10.17632/xwhnkzzdmm.4
title: Scratch Test Characterization of Heterogeneous Rock Mechanical Properties with Applications to Enhanced Geothermal Systems

description: Research Data for a manuscript under peer-review
DOI: 10.17632/zx6xt8772j.1
title: GondwanaCoal_KlinkenbergPermeability

description: The data-sets are from three Gondwana Coal fields
DOI: 10.17632/4kx5sfx9vz.2
title: Cis-regulatory mutations with driver hallmarks in major cancers

description: Jan-11-2021 Two types of datasets for each cancer type are provided as follows: Varscan called somatic mutation data: these are raw somatic mutations called with default Varscan parameters without any filtering. Gene-level ASE data: these are gene-level ASE based on RNA-seq data of tumor samples. In our paper, the above data were further filtered and performed association test between gene-level ASE and somatic mutation occurrence within different regulatory regions. See details in the section of method in our iScience paper: Zhongshan Cheng, Michael Vermeulen, Micheal Rollins-Green, Brian DeVeale, Tomas Babak. 2021. Cis-regulatory mutations with driver hallmarks in major cancers. iScience. Dataset Annoations: Headers for somatic mutation derived from Whole Genome Sequence (WGS) data using the software Varscan (dataset: Cancer_type_varscan_mutations.csv): chrom="the chromosome that the mutation is residing in" position="mutation position on the chromosome (hg19)" ref="reference allele for the mutation" var="mutated allele for the mutation" normal_reads1="sequence reads for the reference allele in normal WGS" normal_reads2="sequence reads for the mutated allele in normal WGS" normal_var_freq="variant allele frequency in normal WGS" normal_gt="normal genotype at this site" tumor_reads1="sequence reads for the reference allele in tumor WGS" tumor_reads2="sequence reads for the mutated allele in tumor WGS" tumor_var_freq="variant allele frequency in tumor WGS" tumor_gt="tumor genotype at this site" somatic_p_value="Varscan somatic mutation P value" gp="TCGA WGS sample ID" Header for gene-level ASE dataset, 'Cancer_type_gene_level_ASE.csv': transcript_id="assembled transcript ids for gene-level ASE" ASE_Reads_Hap1="RNA-seq read sum for phased haplotype 1" ASE_Read_Hap2="RNA-seq read sum for phased haplotype 2" SNP_Read_on_Hap1_2="For each SNP phased into two haplotypes, its allele reads on each haplotype" SNPs="SNPs phased into two haplotypes for the assembled transcript" SNP_Alleles="Two alleles of each SNP phased into each haplotype" TCGA_Sample_ID="TCGA RNA-seq ID" transcript_st="assembled transcript start position (hg19)" transcript_end="assembled transcript end position (hg19)" chr="chromosome information for assembled transcript"
DOI: 10.17632/6wxfjgyk5k.2
title: PARP ATM

description: Summary Loss of the ataxia-telangiectasia mutated (ATM) kinase causes cerebellum-specific neurodegeneration in humans. We previously demonstrated that deficiency in ATM activation via oxidative stress generates insoluble protein aggregates in human cells, reminiscent of protein dysfunction in common neurodegenerative disorders. Here we show that this process is driven by poly-ADP-ribose polymerases (PARPs) and that the insoluble protein species arise from intrinsically disordered proteins associating with PAR-associated genomic sites in ATM-deficient cells. The lesions implicated in this process are single-strand DNA breaks dependent on reactive oxygen species, transcription, and R-loops. Human cells expressing Mre11 A-T-like disorder mutants also show PARP-dependent aggregation identical to ATM deficiency. Lastly, analysis of A-T patient cerebellum samples shows widespread protein aggregation as well as loss of proteins known to be critical in human spinocerebellar ataxias that is not observed in neocortex tissues. These results provide a new hypothesis for loss of protein integrity and cerebellum function in A-T.
DOI: 10.17632/vtbxdm57bp.1
title: Shear wave splitting data set - Los Humeros Geothermal Field

description: Anisotropic data set, used in the analysis of the article "Analysis of shear wave splitting parameters in Los Humeros Geothermal Field, Puebla, Mexico"
DOI: 10.17632/nckrvjrjkf.1
title: Yang et al. (2021), JDS19185-Supplementary Files

description: Yang et al. (2021), JDS19185-Supplementary Files
DOI: 10.17632/7bf279kgfg.1
title: Farmers' livelihood strategies and perceived constraints from the poor and non-poor households: A dataset from field survey in Nghe An, Vietnam

description: This article presents a dataset on trends and difficulties in forest land use in Chau Thai Commune, Nghe An Province - a rural mountainous area in Vietnam. A random sampling technique and a face-to-face interview method were employed to survey 215 households in the region in 2018. Overall, the dataset presents that economic growth in Chau Thai Commune largely depends on agriculture and forestry, and the main source of income derives from forest land that covers 90% of the region’s land area. It also shows that the government's growth-stimulating policies, in addition to the natural and human factors, play a key role in socio-economic development.
DOI: 10.17632/5w5tr7xdrr.1
title: Radioactive Source Localisation via Projective Linear Reconstruction

description: A dataset with the raw data collected as part of the Radioactive Source Localisation via Projective Linear Reconstruction paper.
DOI: 10.17632/c6ypdm3wzg.1
title: LINF_070013900

description: flavoprotein subunit-like protein; Leishmania infantum
DOI: 10.17632/52zyny39yy.1
title: Data on the effects of COVID-19 pandemic on people’s expectations about their future

description: Dataset obtained from an online survey conducted during the lockdown in Italy (April 2020) investigating psychological and socio-economic variables related to the COVID-19 emergency.
DOI: 10.17632/x334j2v4vf.1
title: LINF_070013300

description: hypothetical protein; Leishmania infantum
DOI: 10.17632/y5sj3wp3j4.2
title: Data and Carbon Cycle Calculations January 2021

description: Companion to "Natural CO2 dominates the increase in CO2 concentration" Calculates carbon cycle scenarios using the formulas shown in the above paper. Climate Physics LLC, 439 Grand Dr 147, Bigfork, Montana, USA
DOI: 10.17632/yt6p8z72pk.1
title: LINF_070011100

description: ras-related protein rab-14; Leishmania infantum
DOI: 10.6084/m9.figshare.3761562.v1752
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.5281/zenodo.4458507
title: Idiosyncratic learning performance in flies generalizes across modalities

description: Data and analysis scripts for the manuscript entitled " Idiosyncratic learning performance in flies generalizes across modalities ".
DOI: 10.5281/zenodo.4458572
title: Idiosyncratic learning performance in flies generalizes across modalities

description: Data and analysis scripts for the manuscript entitled " Idiosyncratic learning performance in flies generalizes across modalities ".
DOI: 10.5281/zenodo.4458506
title: Idiosyncratic learning performance in flies generalizes across modalities

description: Data and analysis scripts for the manuscript entitled " Idiosyncratic learning performance in flies generalizes across modalities ".
DOI: 10.5281/zenodo.4458608
title: Crossing hands behind your back reduces recall of manual action sentences and alters brain dynamics

description: The experiment involved a 2 Verb (manual, attentional) x 2 Hand posture (front, behind) within-participant design. Half of the participants were assigned randomly to one of the two sets of 120 experimental sentences. The sentences were divided into 12 experimental blocks of 11 sentences each: 5 manual and 5 attentional sentences as experimental materials, and 1 filler sentence that was added at the beginning of each block to discard recall primacy effects and excluded from the analysis. An additional block of 5 sentences was used as practice. Each experimental block consisted of: a) learning phase, including the 10 experimental sentences in random order, plus the initial filler sentence, b) one-minute distractive task, c) recall phase. For more information about the data, please refer to the Corresponding Author
DOI: 10.5281/zenodo.4458607
title: Crossing hands behind your back reduces recall of manual action sentences and alters brain dynamics

description: The experiment involved a 2 Verb (manual, attentional) x 2 Hand posture (front, behind) within-participant design. Half of the participants were assigned randomly to one of the two sets of 120 experimental sentences. The sentences were divided into 12 experimental blocks of 11 sentences each: 5 manual and 5 attentional sentences as experimental materials, and 1 filler sentence that was added at the beginning of each block to discard recall primacy effects and excluded from the analysis. An additional block of 5 sentences was used as practice. Each experimental block consisted of: a) learning phase, including the 10 experimental sentences in random order, plus the initial filler sentence, b) one-minute distractive task, c) recall phase. For more information about the data, please refer to the Corresponding Author