cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5110699.v3
title: The damselfly and dragonfly watercolour collection of Edmond de Selys Longchamps: II Calopterygines, Cordulines, Gomphines and Aeschnines

description: In the nineteenth century Edmond de Selys Longchamps added watercolours, drawings and notes to his extensive collection of dragonfly and damselfly specimens. The majority of illustrations were executed by Selys and Guillaume Severin. The watercolour collection is currently part of the collection of the Royal Belgian Institute for Natural Sciences in Brussels. This previously unpublished material has now been scanned and is accessible on the website of this institute. This article presents the part of the collection concerning the following sous-familles according to Selys: Calopterygines (currently superfamilies Calopterygoidea and Epiophlebioidea), Cordulines (currently superfamily Libelluloidea), Gomphines (currently superfamily Petaluroidea, Gomphoidea, Cordulegastroidea and Aeshnoidea) and Aeschnines (currently superfamily Aeshnoidea). This part consists of 750 watercolours, 64 drawings and 285 text sheets. Characteristics and subject matter of the sheets with illustrations and text are presented. The majority (92%) of all sheets with illustrations have been associated with current species names (Calopteryines 268, Cordulines 109, Gomphines 268 and Aeschnines 111). We hope the digital images and documentation stress the value of the watercolour collection of Selys and promote it as a source for odonate research.
DOI: 10.6084/m9.figshare.5110699.v2
title: The damselfly and dragonfly watercolour collection of Edmond de Selys Longchamps: II Calopterygines, Cordulines, Gomphines and Aeschnines

description: In the nineteenth century Edmond de Selys Longchamps added watercolours, drawings and notes to his extensive collection of dragonfly and damselfly specimens. The majority of illustrations were executed by Selys and Guillaume Severin. The watercolour collection is currently part of the collection of the Royal Belgian Institute for Natural Sciences in Brussels. This previously unpublished material has now been scanned and is accessible on the website of this institute. This article presents the part of the collection concerning the following sous-familles according to Selys: Calopterygines (currently superfamilies Calopterygoidea and Epiophlebioidea), Cordulines (currently superfamily Libelluloidea), Gomphines (currently superfamily Petaluroidea, Gomphoidea, Cordulegastroidea and Aeshnoidea) and Aeschnines (currently superfamily Aeshnoidea). This part consists of 750 watercolours, 64 drawings and 285 text sheets. Characteristics and subject matter of the sheets with illustrations and text are presented. The majority (92%) of all sheets with illustrations have been associated with current species names (Calopteryines 268, Cordulines 109, Gomphines 268 and Aeschnines 111). We hope the digital images and documentation stress the value of the watercolour collection of Selys and promote it as a source for odonate research.
DOI: 10.6084/m9.figshare.5110603
title: Data - Plos

description: Statistical support for the respective article
DOI: 10.6084/m9.figshare.5110603.v1
title: Data - Plos

description: Statistical support for the respective article
DOI: 10.17029/fbdc9fdd-6ecc-40ef-b318-0f49aa33ce1d
title: Dataset for 'Effect of acute passive heating on glucose tolerance and cardiovascular function in people with Type 2 diabetes: A randomised, balanced crossover, control trial.'

description: Details of any specialised formats or abbreviations HR = Heart Rate SBP = Systolic Blood Pressure DBP = Diastolic Blood Pressure Hct = Haematocrit concentration Hb = Haemoglobin concentration Tsensation = Thermal sensation Tcomfort = Thermal comfort RMR = Resting Metabolic Rate CHO = Carbohydrate Utilization Rate Fat = Fat Utilization Rate TSI =Tissue Saturation Index Pk =Peak AUC = Are Under the Curve Trec = Rectal Temperature HbA1c = Glycated Haemoglobin BMI = Body Mass Index T2DM = Type 2 Diabetes Mellitus BL = Baseline QUICKI = Quantitative Insulin Sensitivity Check Index CON = Control condition OGTT_HOT = heating after glucose ingestion condition HOT_OGTT = heating before glucose ingestion condition
DOI: 10.6084/m9.figshare.5110312
title: Hypoxia inducible factor-1 HIF-1 promotes myeloid-derived suppressor cell accumulation through ENTPD2/CD39L1 in hepatocellular carcinoma

description: Transcriptome sequencing data HCC
DOI: 10.6084/m9.figshare.5110303
title: A new pycnodont fish, <i>Scalacurvichthys naishi</i> gen. et sp. nov., from the Late Cretaceous of Israel

description: A new pycnodont fish from the early–mid Cenomanian, Late Cretaceous, of the ‘Ein Yabrud quarry near the village of Beit Eil in Israel is the first pycnodont fish to be described from this locality. Due to the locality where it was found, <i>Scalacurvithys naishi</i> gen. et sp. nov. is considered an inhabitant of reefal waters interspersed with lagoons in the eastern Tethys Sea. <i>Scalacurvichthys naishi</i> is notable for its protruding, hook-shaped first dorsal ridge scale above a large triangular dermatocranium, a deeply sloped and antero-posteriorly shortened skull and bifurcated cloacal scales. The bifurcating scales are a new character previously unknown in pycnodontomorph fishes but have been discovered in two more taxa, which indicates a new type of character that will be useful for future phylogenetic analyses of pycnodontomorph fishes. The new taxon is a member of Pycnodontidae and we conducted a phylogenetic analysis to establish its relationships to other pycnodont fishes. Our results reveal that <i>Scalacurvichthys naishi</i> is a well-resolved member of the subfamily Pycnodontinae. http://zoobank.org/urn:lsid:zoobank.org:pub:04383E2A-551A-4F57-8996-68E06EFA52E0
DOI: 10.6084/m9.figshare.5110303.v1
title: A new pycnodont fish, <i>Scalacurvichthys naishi</i> gen. et sp. nov., from the Late Cretaceous of Israel

description: A new pycnodont fish from the early–mid Cenomanian, Late Cretaceous, of the ‘Ein Yabrud quarry near the village of Beit Eil in Israel is the first pycnodont fish to be described from this locality. Due to the locality where it was found, <i>Scalacurvithys naishi</i> gen. et sp. nov. is considered an inhabitant of reefal waters interspersed with lagoons in the eastern Tethys Sea. <i>Scalacurvichthys naishi</i> is notable for its protruding, hook-shaped first dorsal ridge scale above a large triangular dermatocranium, a deeply sloped and antero-posteriorly shortened skull and bifurcated cloacal scales. The bifurcating scales are a new character previously unknown in pycnodontomorph fishes but have been discovered in two more taxa, which indicates a new type of character that will be useful for future phylogenetic analyses of pycnodontomorph fishes. The new taxon is a member of Pycnodontidae and we conducted a phylogenetic analysis to establish its relationships to other pycnodont fishes. Our results reveal that <i>Scalacurvichthys naishi</i> is a well-resolved member of the subfamily Pycnodontinae. http://zoobank.org/urn:lsid:zoobank.org:pub:04383E2A-551A-4F57-8996-68E06EFA52E0
DOI: 10.6084/m9.figshare.5110312.v1
title: Hypoxia inducible factor-1 HIF-1 promotes myeloid-derived suppressor cell accumulation through ENTPD2/CD39L1 in hepatocellular carcinoma

description: Transcriptome sequencing data HCC
DOI: 10.6084/m9.figshare.5110255
title: Online Supplement 4 Solutions for Problem Instances.xlsx

description: Solutions for Problem Instances
DOI: 10.6084/m9.figshare.5110252
title: Online Supplement 3 Problem Instances.xlsx

description: Problem Instances
DOI: 10.6084/m9.figshare.5110255.v1
title: Online Supplement 4 Solutions for Problem Instances.xlsx

description: Solutions for Problem Instances
DOI: 10.6084/m9.figshare.5110249
title: Online Supplement 2 DP and MIP Solutions for Problem in Figure 4.xlsx

description: DP and MIP Solutions for Problem in Figure 4<br>
DOI: 10.6084/m9.figshare.5110249.v1
title: Online Supplement 2 DP and MIP Solutions for Problem in Figure 4.xlsx

description: DP and MIP Solutions for Problem in Figure 4<br>
DOI: 10.6084/m9.figshare.5110159
title: Nutritional status and height, weight and BMI centiles of school-aged children and adolescents of 6–18-years from Kinshasa (DRC)

description: <b>Background:</b> The last study to establish centiles of main anthropometric measurements in Kinshasa was conducted over 60 years ago, which questions its current adequacy to describe or monitor growth in this population. <b>Aim:</b> To assess the nutritional status of school-aged children and adolescents and to estimate centile curves of height, weight and body mass index (BMI). <b>Subjects and methods:</b> A representative sample of 7541 school-aged children and adolescents (48% boys) aged 6–18 years was measured between 2010–2013. Smooth centiles of height, weight and BMI-for-age were estimated with the LMS method and compared with the WHO 2007 reference. Nutritional status was assessed by comparing measurements of height and BMI against the appropriate WHO cut-offs. <b>Results:</b> Compared to the WHO reference, percentiles of height and BMI were generally lower. This difference was larger in boys than in girls and increased as they approached adolescence. The prevalence of short stature ( 1 SD) was higher in girls (8.6%) than in boys (4.5%). <b>Conclusion:</b> Children from Kinshasa fall below WHO centile references. This study established up-to-date centile curves for height, weight and BMI by age in children and adolescents. These reference curves describe the current status of these anthropometric markers and can be used as a basis for comparison in future studies.
DOI: 10.6084/m9.figshare.5110144
title: Changes in the chemical compositions of leaf litter in the canopy of a Japanese cedar plantation

description: Canopy leaf litter is typically unevenly distributed due to interception by branches and epiphytes and/or to attachment to branches and tree trunks. Japanese cedar (Cryptomeria japonica) trees hold a large amount of canopy litter that stays attached to foliage and branches for several years before litterfall. Litter retention in the canopy is predicted to affect the chemical composition of litterfall and throughfall. We analyzed the chemical compositions of water-soluble materials washed from the leaves and those of the leaf residues with different leaf litter ages to clarify the effect of leaf-litter retention in the canopy of Japanese cedar trees. Chemical components of the leaf litter after the washing procedure show temporal changes in total carbon, total nitrogen, and carbon/nitrogen ratio just after senescence and prior to litterfall. Higher inorganic ion concentrations in soluble materials from old dead leaves (ODL) dead for more than 2 years suggest the importance of ODL in leaching and catching chemical components in the canopy. Our results show that Japanese cedar canopies retain the various qualities of leaf litter, which are produced by senescence, leaching, and catching dry deposition, and that a large amount of dissolved components leach from dead leaves that are still attached to the canopy.
DOI: 10.6084/m9.figshare.5110117
title: Ethical culture and worker motivation

description: The primary aim of this study was to determine if an individual’s perception of the ethical culture of their organisation could be used to predict their work motivation.
DOI: 10.6084/m9.figshare.5110144.v1
title: Changes in the chemical compositions of leaf litter in the canopy of a Japanese cedar plantation

description: Canopy leaf litter is typically unevenly distributed due to interception by branches and epiphytes and/or to attachment to branches and tree trunks. Japanese cedar (Cryptomeria japonica) trees hold a large amount of canopy litter that stays attached to foliage and branches for several years before litterfall. Litter retention in the canopy is predicted to affect the chemical composition of litterfall and throughfall. We analyzed the chemical compositions of water-soluble materials washed from the leaves and those of the leaf residues with different leaf litter ages to clarify the effect of leaf-litter retention in the canopy of Japanese cedar trees. Chemical components of the leaf litter after the washing procedure show temporal changes in total carbon, total nitrogen, and carbon/nitrogen ratio just after senescence and prior to litterfall. Higher inorganic ion concentrations in soluble materials from old dead leaves (ODL) dead for more than 2 years suggest the importance of ODL in leaching and catching chemical components in the canopy. Our results show that Japanese cedar canopies retain the various qualities of leaf litter, which are produced by senescence, leaching, and catching dry deposition, and that a large amount of dissolved components leach from dead leaves that are still attached to the canopy.
DOI: 10.6084/m9.figshare.5110159.v1
title: Nutritional status and height, weight and BMI centiles of school-aged children and adolescents of 6–18-years from Kinshasa (DRC)

description: <b>Background:</b> The last study to establish centiles of main anthropometric measurements in Kinshasa was conducted over 60 years ago, which questions its current adequacy to describe or monitor growth in this population. <b>Aim:</b> To assess the nutritional status of school-aged children and adolescents and to estimate centile curves of height, weight and body mass index (BMI). <b>Subjects and methods:</b> A representative sample of 7541 school-aged children and adolescents (48% boys) aged 6–18 years was measured between 2010–2013. Smooth centiles of height, weight and BMI-for-age were estimated with the LMS method and compared with the WHO 2007 reference. Nutritional status was assessed by comparing measurements of height and BMI against the appropriate WHO cut-offs. <b>Results:</b> Compared to the WHO reference, percentiles of height and BMI were generally lower. This difference was larger in boys than in girls and increased as they approached adolescence. The prevalence of short stature ( 1 SD) was higher in girls (8.6%) than in boys (4.5%). <b>Conclusion:</b> Children from Kinshasa fall below WHO centile references. This study established up-to-date centile curves for height, weight and BMI by age in children and adolescents. These reference curves describe the current status of these anthropometric markers and can be used as a basis for comparison in future studies.
DOI: 10.6084/m9.figshare.5110108
title: Dataset for: Dynamic classification using credible intervals in longitudinal discriminant analysis

description: Recently developed methods of Longitudinal Discriminant Analysis allow for classification of subjects into prespecified prognostic groups using longitudinal history of both continuous and discrete biomarkers. The classification utilises Bayesian estimates of the group membership probabilities for each prognostic group. These estimates are derived from a multivariate generalized linear mixed model of the biomarkers longitudinal evolution in each of the groups, which can be updated each time new data is available for a patient, providing a dynamic (over time) allocation scheme. However, the precision of the estimated group probabilities differs for each patient and also over time. This precision can be assessed by looking at credible intervals for the group membership probabilities. In this paper, we propose a new allocation rule that incorporates credible intervals for use in context of a dynamic longitudinal discriminant analysis, and show that this can decrease the number of false positives in a prognostic test, improving the Positive Predictive Value (PPV). We also establish that by leaving some patients unclassified for a certain period of time, the classification accuracy of those patients who are classified can be improved, giving increased confidence to clinicians in their decision making. Finally, we show that determining a stopping rule dynamically can be more accurate than specifying a set time point at which to decide on a patient's status. We illustrate our methodology using data from patients with epilepsy and show how patients who fail to achieve adequate seizure control are more accurately identified using credible intervals compared to existing methods.
DOI: 10.6084/m9.figshare.5110051
title: Raw data MasterThesis

description: This dataset contains raw data and results from an evaluation of an application. The results are part of my Master thesis at the Vrije Universiteit Amsterdam
DOI: 10.6084/m9.figshare.5110108.v1
title: Dataset for: Dynamic classification using credible intervals in longitudinal discriminant analysis

description: Recently developed methods of Longitudinal Discriminant Analysis allow for classification of subjects into prespecified prognostic groups using longitudinal history of both continuous and discrete biomarkers. The classification utilises Bayesian estimates of the group membership probabilities for each prognostic group. These estimates are derived from a multivariate generalized linear mixed model of the biomarkers longitudinal evolution in each of the groups, which can be updated each time new data is available for a patient, providing a dynamic (over time) allocation scheme. However, the precision of the estimated group probabilities differs for each patient and also over time. This precision can be assessed by looking at credible intervals for the group membership probabilities. In this paper, we propose a new allocation rule that incorporates credible intervals for use in context of a dynamic longitudinal discriminant analysis, and show that this can decrease the number of false positives in a prognostic test, improving the Positive Predictive Value (PPV). We also establish that by leaving some patients unclassified for a certain period of time, the classification accuracy of those patients who are classified can be improved, giving increased confidence to clinicians in their decision making. Finally, we show that determining a stopping rule dynamically can be more accurate than specifying a set time point at which to decide on a patient's status. We illustrate our methodology using data from patients with epilepsy and show how patients who fail to achieve adequate seizure control are more accurately identified using credible intervals compared to existing methods.
DOI: 10.17608/k6.auckland.5110030
title: Offset Curves for Variable-Width X-splines

description: This document describes an algorithm for generating offset curves for X-splines, where the width of the X-spline is allowed to vary along its length. The implementation is provided by the grid.offsetXspline function in the ‘vwline’ package for R.
DOI: 10.17608/k6.auckland.5110030.v1
title: Offset Curves for Variable-Width X-splines

description: This document describes an algorithm for generating offset curves for X-splines, where the width of the X-spline is allowed to vary along its length. The implementation is provided by the grid.offsetXspline function in the ‘vwline’ package for R.
DOI: 10.6084/m9.figshare.5110051.v2
title: raw results experiment.xlsx

description: This dataset contains raw data and results from an evaluation of an application. The results are part of my Master thesis at the Vrije Universiteit Amsterdam
DOI: 10.5281/zenodo.4011606
title: LiDAR dataset

description: These are the modified LiDAR data used in Bernard et al. (2020). Original pre-earthquake LiDAR can be found at: http://dx.doi.org/10.5069/G9G44N75 Original post-earthquake data can be accessible on request.
DOI: 10.6084/m9.figshare.5109973
title: A dolphin fossil ear bone from the northern Neotropics–insights into habitat transitions in iniid evolution

description: An iniid fossil (Cetacea, Odontoceti) is reported based on a periotic found in the Codore Formation (late Miocene to middle Pliocene) of northwestern Venezuela. The marine sediments where the Codore dolphin was collected have yielded another cetacean and a diverse elasmobranch fauna. Cladistic analysis indicates a close relationship between the Codore dolphin and the extant Amazon River dolphin (<i>Inia geoffrensis</i>); key characteristics include a large cochlear portion that is dorsoventrally compressed and the extremely small size of the posterior process. High-resolution micro-computed tomography scans were used for the description and analysis of the bony labyrinth endocast. Geometric morphometric analysis of the bony labyrinth endocast places the Codore dolphin as intermediate between the La Plata dolphin (<i>Pontoporia blainvillei</i>) and <i>Inia geoffrensis</i> (principal component 1), but distinctive from both extant species (principal component 2). Comparisons of the depositional environment with cladistically informed reconstructions and inferences based on cochlear and vestibular anatomy suggest that the Codore dolphin had the flexibility to enter marine, brackish, and fluvial environments as some extant cetaceans do today (e.g., <i>Pontoporia blainvillei</i>). SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Aguirre-Fernández, G., B. Mennecart, M. R. Sánchez-Villagra, R. Sánchez, and L. Costeur. 2017. A dolphin fossil ear bone from the northern Neotropics—insights into habitat transitions in iniid evolution. Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2017.1315817.
DOI: 10.6084/m9.figshare.5109973.v1
title: A dolphin fossil ear bone from the northern Neotropics–insights into habitat transitions in iniid evolution

description: An iniid fossil (Cetacea, Odontoceti) is reported based on a periotic found in the Codore Formation (late Miocene to middle Pliocene) of northwestern Venezuela. The marine sediments where the Codore dolphin was collected have yielded another cetacean and a diverse elasmobranch fauna. Cladistic analysis indicates a close relationship between the Codore dolphin and the extant Amazon River dolphin (<i>Inia geoffrensis</i>); key characteristics include a large cochlear portion that is dorsoventrally compressed and the extremely small size of the posterior process. High-resolution micro-computed tomography scans were used for the description and analysis of the bony labyrinth endocast. Geometric morphometric analysis of the bony labyrinth endocast places the Codore dolphin as intermediate between the La Plata dolphin (<i>Pontoporia blainvillei</i>) and <i>Inia geoffrensis</i> (principal component 1), but distinctive from both extant species (principal component 2). Comparisons of the depositional environment with cladistically informed reconstructions and inferences based on cochlear and vestibular anatomy suggest that the Codore dolphin had the flexibility to enter marine, brackish, and fluvial environments as some extant cetaceans do today (e.g., <i>Pontoporia blainvillei</i>). SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Aguirre-Fernández, G., B. Mennecart, M. R. Sánchez-Villagra, R. Sánchez, and L. Costeur. 2017. A dolphin fossil ear bone from the northern Neotropics—insights into habitat transitions in iniid evolution. Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2017.1315817.
DOI: 10.6084/m9.figshare.5109754
title: Ebola VCF Files from 2014 outbreak

description: Freebayes variant calls for data from 2014 outbreak in Zaire.
DOI: 10.6084/m9.figshare.5109754.v1
title: Ebola VCF Files from 2014 outbreak

description: Freebayes variant calls for data from 2014 outbreak in Zaire.