cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/jjfg7h8bvd
title: data for food loss and waste paper

description: This data folder includes code and outputs for the food loss and waste project.
DOI: 10.6084/m9.figshare.12152610.v1
title: IEAM MBR_Table S-1

description: Table S-1
DOI: 10.6084/m9.figshare.15097107.v1
title: The effects of reputation on inequality in network cooperation games

description: Processed experimental data, NetLogo script for agent-based model, and Python scripts for model and data analyses for the paper "The effects of reputation on inequality in network cooperation games" in <i>Philosophical Transactions of the Royal Society B.</i> The experimental data comes from the following studies:K. Kamei, L. Putterman, Play it again: Partner choice, reputation building and learning from finitely repeated dilemma games. <i>Econ. J.</i> 127, 1069–1095 (2017).G. E. Bolton, E. Katok, A. Ockenfels, How effective are electronic reputation mechanisms? An experimental investigation. <i>Manag. Sci.</i> 50, 1587–1602 (2004).G. E. Bolton, E. Katok, A. Ockenfels, Cooperation among strangers with limited information about reputation. <i>J. Public Econ.</i> 89, 1457–1468 (2005).I. Seinen, A. Schram, Social status and group norms: Indirect reciprocity in a repeated helping experiment. <i>Eur. Econ. Rev.</i> 50, 581–602 (2006).J. A. Cuesta, C. Gracia-Lázaro, A. Ferrer, Y. Moreno, A. Sánchez, Reputation drives cooperative behaviour and network formation in human groups. <i>Sci. Rep.</i> 5, 7843 (2015).D. Melamed, A. Harrell, B. Simpson, Cooperation, clustering, and assortative mixing in dynamic networks. <i>Proc. Natl. Acad. Sci.</i>, 201715357 (2018).D. O. Stahl, An experimental test of the efficacy of a simple reputation mechanism to solve social dilemmas. <i>J. Econ. Behav. Organ.</i> 94, 116–124 (2013).R.C. Bayer, Cooperation in partnerships: The role of breakups and reputation. <i>J. Institutional Theor. Econ. JITE</i> 172, 615–638 (2016).A. Harrell, D. Melamed, B. Simpson, The strength of dynamic ties: The ability to alter some ties promotes cooperation in those that cannot be altered. <i>Sci. Adv.</i> 4, eaau9109 (2018).
DOI: 10.6084/m9.figshare.12765272.v1
title: Supplementary Material for: CD49d Is Upregulated in Circulating T Lymphocytes from HTLV-1-Infected Patients

description: <b><i>Introduction:</i></b> HTLV-1-associated myelopathy/tropical spastic paraparesis (HAM/TSP) is a chronic progressive myelopathy associated with an inflammation of the central nervous system (CNS), being characterized by perivascular infiltration of inflammatory cells. HTLV-1-infected cells have the capacity to migrate through endothelial layers by enhancing adhesion receptor expression and corresponding ligands. T cells interact with the extracellular matrix via integrin receptors and these interactions affect both cell migration and proliferation. The importance of these interactions in retrovirus-induced diseases, however, remains less clear. <b><i>Methods:</i></b> Herein we studied the expression of 3 integrin alpha chains (CD49d, CD49e, and CD49f) on the membrane of T-cell subsets in patients infected by HTLV-1, both HAM/TSP patients and oligo/asymptomatic subjects who were asymptomatic or presented slight manifestations related to the virus infection. <b><i>Results:</i></b> We observed higher peripheral blood frequency of CD49d<sup>hi</sup>CD4<sup>+</sup> and CD49d<sup>hi</sup>CD8<sup>+</sup> T cells in HTLV-1-infected patients. <b><i>Conclusion:</i></b> Our findings suggest that the increased expression of adhesion molecules, such as CD49d on T lymphocytes from HTLV-1-infected patients may contribute to the pathogenesis of the disease, in both oligo/asymptomatic and HAM/TSP-infected subjects. Accordingly, it is conceivable that there is a potential use of CD49d as target for a therapeutic approach aiming at blocking migration of activated T cells from HTLV-1-infected patients into the CNS, thus avoiding the progression to HAM/TSP.
DOI: 10.6084/m9.figshare.3531485.v1
title: Appendix B. Photograph of four out of eight experimental blocks in the shallow lake Lauwersmeer shortly after summer exclosure establishment in March 2005.

description: Photograph of four out of eight experimental blocks in the shallow lake Lauwersmeer shortly after summer exclosure establishment in March 2005.
DOI: 10.17632/xdgwtvn2vs
title: Data for “Hydrogen and silicon are the preferred light elements in Earth’s core”

description: The light element compositions in the Earth's outer core for Fe-Si-H, Fe-Si-O, and Fe-S-H were obtained using a simulated annealing algorithm. The Tables are the chemical potential of H in Fe-H alloys at 6200 K and P-V data of Fe-S and Fe-Si alloys at 6200 K.
DOI: 10.6084/m9.figshare.3470699.v1
title: Six decades of the Hall–Petch effect – a survey of grain-size strengthening studies on pure metals

description: Refining a metal’s grain size can result in dramatic increases in strength, and the magnitude of this strengthening increment can be estimated using the Hall–Petch equation. Since the Hall–Petch equation was proposed, there have been many experimental studies supporting its applicability to pure metals, intermetallics and multi-phase alloys. In this article, we gather the grain-size strengthening data from the Hall–Petch studies on pure metals and use this aggregated data to calculate best estimates of these metals’ Hall–Petch parameters. We also use this aggregated data to re-evaluate the various models developed to physically support the Hall–Petch scaling.
DOI: 10.6084/m9.figshare.13620160.v1
title: Additional file 6 of Systematic comparison of high-throughput single-cell RNA-seq methods for immune cell profiling

description: Additional file 6: Supplement Table 5. Read-depth normalization iterations
DOI: 10.6084/m9.figshare.24025155.v1
title: 数据集.zip

description: 气相色谱山羊肉
DOI: 10.6084/m9.figshare.28560548.v1
title: Alignment

description: This deposit contains nucleotide sequence alignments of several filamentous fungi generated using the MEGA X software system. The alignments are in FASTA format and were used in the study of Latoruaceae family.
DOI: 10.6084/m9.figshare.28004924.v1
title: Date

description: Data Supporting the Manuscript “Orbital and Millennial Variations in Wildfires Recorded in the East Siberian Arctic Shelf over the Last Climatic Cycle”.
DOI: 10.6084/m9.figshare.28694360.v1
title: Supplementary Material from Undescribed and Imperiled Vertebrate Biodiversity Near An American Urban Center

description: PCA_loadings.csv
DOI: 10.6084/m9.figshare.5127700.v1
title: Supplementary Material for: The WHO-5 Well-Being Index: A Systematic Review of the Literature

description: <b><i>Background:</i></b> The 5-item World Health Organization Well-Being Index (WHO-5) is among the most widely used questionnaires assessing subjective psychological well-being. Since its first publication in 1998, the WHO-5 has been translated into more than 30 languages and has been used in research studies all over the world. We now provide a systematic review of the literature on the WHO-5. <b><i>Methods:</i></b> We conducted a systematic search for literature on the WHO-5 in PubMed and PsycINFO in accordance with the PRISMA guidelines. In our review of the identified articles, we focused particularly on the following aspects: (1) the clinimetric validity of the WHO-5; (2) the responsiveness/sensitivity of the WHO-5 in controlled clinical trials; (3) the potential of the WHO-5 as a screening tool for depression, and (4) the applicability of the WHO-5 across study fields. <b><i>Results:</i></b> A total of 213 articles met the predefined criteria for inclusion in the review. The review demonstrated that the WHO-5 has high clinimetric validity, can be used as an outcome measure balancing the wanted and unwanted effects of treatments, is a sensitive and specific screening tool for depression and its applicability across study fields is very high. <b><i>Conclusions:</i></b> The WHO-5 is a short questionnaire consisting of 5 simple and non-invasive questions, which tap into the subjective well-being of the respondents. The scale has adequate validity both as a screening tool for depression and as an outcome measure in clinical trials and has been applied successfully across a wide range of study fields.
DOI: 10.15468/dl.2a27gu
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Valeriana jatamansi Jones)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "Geometry POLYGON ((60.85388 15.95789, 105.0447 15.95789, 105.0447 39.31873, 60.85388 39.31873, 60.85388 15.95789))",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1980"
 ]
}

 The dataset includes 62 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009377-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/uuid:6246e6a6-d149-420f-a6a4-7afd08f154b5
title: Airport Security Checkpoint Data

description: This is dataset is published as part of the 'Data-driven Analysis of Airport Security Checkpoint Operations' paper published in the Aerospace journal.
DOI: 10.6084/m9.figshare.27241950.v3
title: Constitutive heterochromatin controls nuclear mechanics, morphology, and integrity through H3K9me3 mediated chromocenter compaction, Manning et al raw data

description: <b>Figure 1. Heterochromatin histone modification states can be modulated distinctly.</b><b>Figure 2. Nuclear blebbing and rupture increase upon loss of H3K9me3 while loss of H3K9me2 decreases this effect.</b><b>Figure 3. Nuclear blebbing and rupture upon loss of H3K9me3 is due to interphase-based behaviors and not dependent on mitotic failures.</b><b>Figure 4. Nuclear stiffness increases upon loss of H3K9me2 and decreases upon loss of H3K9me3.</b><b>Figure 5. Chromocenter compaction increases upon loss of H3K9me2, decreases upon loss of H3K9me3, and is unchanged by loss of H3K27me3.</b><b>Supplemental Figure 1. Phospho-MLC2, lamin A/C, and HP1α levels remain unchanged by inhibitors altering histone modifications.</b><b>Supplemental Figure 2. H3K9me3 chromocenter heatmaps, DNA compaction, and nucleus characteristics.</b><b>Supplemental Figure 3. Nuclear blebbing and chromocenter compaction are restored upon dual knockdown of H3K9me2 and H3K27me3.</b>
DOI: 10.6084/m9.figshare.27887076.v1
title: Supplementary Material for: The lung-brain axis: genetic evidence for causal effects of asthma, allergic rhinitis, and chronic rhinosinusitis on brain structure

description: Background: Previous studies have indicated Asthma, allergic rhinitis (AR) and chronic rhinosinusitis (CRS) may influence brain structure. However, it remains unclear whether these three airway conditions cause brain structural changes and which specific brain regions are affected.
Methods: We conducted a Mendelian randomization (MR) to explore the causal effect of AR, CRS, and asthma on brain structure. Reverse MR was conducted to investigate potential impact of changes in brain structure on AR, CRS, and asthma. Additionally, to enhance our understanding of the lung-brain axis, we examined bidirectional relationships between Alzheimer’s disease, Parkinson’s disease, insomnia, major depression, neuroticism, attention deficit hyperactivity disorder and these three respiratory disorders
Findings: The genetically predicted CRS could reduce the surface area in the banks of the superior temporal sulcus, paracentral, and superior frontal. Asthma had an association with a decrease in the surface area of the entorhinal, fusiform, and temporal pole, as well as a reduction in the volume of amygdala. Asthma could also increase the thickness of pericalcarine. Reverse MR showed that changes in the surface area of pars opercularis and thickness of entorhinal cortex had a potential effect on CRS. Besides, bidirectional MR between 3 airway disorders and 6 neuropsychiatric disorders indicated neuroticism could raised risk for asthma, and major depression could increased the risk of CRS and asthma
Conclusion: Our MR analysis revealed a potential causal relationship among CRS, asthma, and atrophy in specific functional areas of the human brain, supporting the existence of a lung-brain axis.
DOI: 10.6084/m9.figshare.28741994.v2
title: Data repository for Light-dark differences in spatial and temporal variability of phosphorus and ammonium uptake by river biofilms

description: Data repository for:<b>Light-dark differences in spatial and temporal variability of phosphorus and ammonium uptake by river biofilms</b>This repository accompanies the manuscript submitted to <b>Limnology and Oceanography </b>and contains all datasets and R scripts used to perform the analyses described in the study.---📁 Contents of this repository:<br>1. <b>R code biofilm uptake.R</b>: R script used to perform all statistical analyses described in the study, including GLMM fitting, model selection, and model averaging. 2. <b>Biofilm nutrient uptake.csv</b>: CSV file containing nutrient uptake rates (SRP and NH₄⁺) for all incubations conducted under light and dark conditions.3. <b>Model selection.csv</b>: CSV file used to analyze spatial and temporal variability in physicochemical and biofilm structural variables, and to explore their influence on biofilm nutrient uptake using model selection.4. <b>Variable legend.csv</b>: CSV file listing and describing all variables in "Model_selection.csv", including full variable names, units, and acronyms.5. <b>Light-Dark uptake ratio.csv</b>: CSV file containing the light–dark uptake ratios for NH₄⁺ and SRP, averaged per site and sampling date.6. <b>NH4-SRP uptake ratio.csv</b>: CSV file containing the NH₄⁺:SRP molar uptake ratios calculated for incubations with dual nutrient additions.7. <b>Random structure selection.csv</b>: CSV file used to explore random-effect structures (Site, Time, Site + Time, Site × Time) using global models prior to model selection.---Please cite this repository if you use these data or scripts in your own research.
DOI: 10.17632/9dkb5gkctp
title: Data for: Waters of the United States: Upgrading wetland valuation via benefit transfer
DOI: 10.17632/w5nfsc5pwy
title: Dataset for Systematic Review of Technological Innovation in Peanut Production

description: Background: The peanut production chain has played an important role in the production of food in a sustainable way and positively impacting economic indicators, thanks to the development of technologies that enable advances in the sector both downstream and upstream. Being extremely important a survey on the types of technological innovation adopted or developed to improve the performance of the results and corroborate for the sustainable development. Theme: The review aims to identify answers to the question: How does technological innovation contribute to the development of the peanut production system? Given the importance of technological innovation and its possible contributions to the peanut production chain, this research is justified. Objective: The general objective was: To identify how technological innovation contributes to the development of the peanut production system. Materials and methods: The methodology applied is of a basic nature by means of an exploratory theoretical essay with a qualitative and quantitative approach through a Systematic Literature Review structured in a state-of-the-art formal protocol. With the help of the StArt software to read and manage the selection and extraction processes. Being meta-analytical of the data, results identified with the use of the software and Iramuteq in the analysis of content based on statistics and ROB2 in the risk of bias assessments. Descriptive and analytical in summarizing the report of discoveries. Result Expectation: It is expected to identify relevant information for reports that add value in the construction of knowledge and scientific development regarding technological innovation and contribution to sustainable development for peanut production.

Key words: Peanut; Production chain; Sustainable development; Innovation; Technology.

Data Value
The data are useful for the validation of the research, to help other researchers who are working on studies related to the theme, allowing the continuation of new studies and corroborating the state of the art.
They can benefit the academic community, technology research and development institutes, agribusiness and food engineering.
Can be used partially and or fully in the development of new studies, being mandatory the citation and reference of this dataset.

Objective
The research that guided the generation and structuring of the present data sought, through the Formal Survey of the state of the art through a Systematic Review - RS, comprising the period from 2016 to 2021, the objective of:
Identify how technological innovation contributes to the development of the peanut production system.
a)	The areas (production, distribution, processing, commercialization, etc.) that have been innovated;
b)	The results observed with technological innovation regarding applications and usability;
c)	How technological innovations contribute to sustainable development.
DOI: 10.6084/m9.figshare.28104782.v1
title: SLAM - Surgical LAparoscopic Motions

description: Laparoscopic surgery has been widely used in various surgical fields due to its minimally invasive and rapid recovery benefits. However, it requires surgeons to have exceptional technical expertise to overcome challenges such as limited surgical space, restricted visual feedback, and the need for high precision. The rapid development of computer vision and deep learning in surgical action recognition provides essential technical support for improving surgical navigation, training, and postoperative evaluation. Despite this progress, existing publicly available datasets have limited scale, high homogeneity, and inconsistent labeling quality, making it challenging to meet the needs of deep learning models. To address the above issues, we developed the SLAM dataset (Surgical LAparoscopic Motions), which encompasses various surgical types. The dataset includes annotations for seven key actions: Abdominal Entry, Use Clip, Hook Cut, Suturing, Panoramic View, Local Panoramic View, and Suction. Experienced medical experts meticulously reviewed the annotations to ensure high quality and clinical accuracy. The SLAM dataset aims to promote the development of laparoscopic surgical action recognition and artificial intelligence-driven surgery, supporting intelligent surgical robots and surgical automation.
DOI: 10.6084/m9.figshare.7593980.v1
title: Supplementary Material for: A Clinimetric Approach for Improving the Measurement of Pharmacophobia with Replication in Two Other Samples

description: Medicine
DOI: 10.17632/vzp55nbbj9
title: Dendritic growth and Liesegang patterns: Inverting the driving and triggering mechanisms

description: The "data" folder contains datasets for curved figures in the convergence study and heatmap figures in the parameter study. 
The "src" folder includes all source code for an example of dendritic growth. One can adjust three parameters in "parameters.prm" to reproduce all numerical results.
DOI: 10.6084/m9.figshare.22583947.v3
title: Competition between pink muhly grass and native plant species: is it really a harmful invasive species?

description: This dataset is about the paper, entitled as "Competition between pink muhly grass and native plant species: is it really a harmful invasive species?", published in the Ecosphere journal. <br> Abstract: 1. Pink muhly grass (<em>Muhlenbergia capillaris </em>Trin.) is an exotic species to South Korea and is popular worldwide as an ornamental grass for landscaping purposes. The Ministry of Environment in South Korea has categorized this species as an “Ecosystem Hazard Class 2” plant, requiring long-term monitoring to assess its ecological impacts on native species and communities. 2. In this study, a 2-year greenhouse experiment was conducted using <em>M. capillaris</em> and 17 native plant species (six annuals, eight non-woody perennials and three woody perennials) to test the hypothesis that if <em>M. capillaris </em>is an invasive species, it will negatively affect the establishment and growth of native plants in competitive pairings compared with controls (native species grown in monoculture). 3. Results showed that the mean canopy cover of native plants in competition with <em>M. capillaris </em>was not significantly different from monocultures of the corresponding native species (<em>F</em>1,98 = 2.35; <em>P </em>= 0.129). There were also no significant differences (<em>F</em>1,98 = 1.17; <em>P </em>= 0.280) in mean aboveground biomass production between native species growing with <em>M. capillaris </em>compared to corresponding native monocultures. 4. Results indicate that <em>M. capillaris </em>did not significantly affect establishment and growth of the 17 native species investigated. The minimal impacts suggest that <em>M. capillaris </em>may not be a harmful invasive species, but further monitoring of its spread will be required to test these findings under natural conditions.
DOI: 10.6084/m9.figshare.19686396.v1
title: Data

description: All databases necessary to run the analyses using the scripts in https://github.com/RobRozzi/Island_mammals <br> These data should be downloaded and placed in the folder: https://github.com/RobRozzi/Island_mammals/tree/main/Data
DOI: 10.6084/m9.figshare.5126932.v1
title: Supplementary Material for: Defective Inflammatory Monocyte Development in IRF8-Deficient Mice Abrogates Migration to the West Nile Virus-Infected Brain

description: IRF8 (interferon-regulatory factor-8) plays a critical role in regulating myeloid cell differentiation. However, the role of this transcription factor in the development of Ly6C+ inflammatory monocytes and their migration to the infected brain has not been examined. We have previously shown that West Nile virus (WNV) infection of wild-type (WT) mice triggers a significant increase in numbers of Ly6C+ monocytes in the bone marrow. These cells traffic via the blood to the infected brain, where they give rise to proinflammatory macrophages. Here, we show that WNV-infected IRF8-deficient (IRF8-/-) mice had significantly reduced numbers of Ly6C+ monocytes in the periphery, with few of these cells found in the blood. Furthermore, low numbers of inflammatory monocyte-derived macrophages were observed in the brains of IRF8-/- mice throughout infection. Adoptive transfer of IRF8-/- Ly6C+ monocytes demonstrated that these cells were intrinsically unable to traffic to the inflamed brain. Low expression of the chemokine receptor CCR2 and integrin VLA-4 by IRF8-/- monocytes likely contributed to this defect, as the interactions between these proteins and their ligands are critical for monocyte egress and migration to inflammatory foci. These data highlight a critical role for IRF8 in inflammatory monocyte differentiation and migration during WNV infection.
DOI: 10.17632/nrpzbvjngk
title: Data for: UHPLC-QqQ-MS/MS method development and validation with statistical analysis: determination of raspberry ketone metabolites in mice plasma and brain

description: This is the original LC-MS experimental data, organized in multiple Excel worksheets, which the R script reads directly for various computation and visualization analysis.