cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.m7wkff
title: Occurrence Download

description: A dataset containing 6786 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Xanthotis flaviventer (R.Lesson, 1828)"
 ]
}

 The dataset includes 6786 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025632-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mxqxc6
title: Occurrence Download

description: A dataset containing 2835576 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Actinopterygii",
 "Geometry POLYGON((-148.80 13.24,-148.80 65.59,-38.58 65.59,-38.58 13.24,-148.80 13.24))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2835576 records from 175 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007519-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.38t2mg
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aeschynanthus lobaticalyx Mendum"
 ]
}

 The dataset includes 13 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017433-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e622hu
title: Occurrence Download

description: A dataset containing 174 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diospyros rubicunda Gürke"
 ]
}

 The dataset includes 174 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025657-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rwb7zk
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Ambulyx maculifera Walker, 1866"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007519-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nxa3wf
title: Occurrence Download

description: A dataset containing 64858 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atlapetes albinucha (d'Orbigny & Lafresnaye, 1838)"
 ]
}

 The dataset includes 64858 records from 151 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042531-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e79cna
title: Occurrence Download

description: A dataset containing 1234 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Scytalopus pachecoi Mauricio, 2005"
 ]
}

 The dataset includes 1234 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025574-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g8nfmg
title: Occurrence Download

description: A dataset containing 538617 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Ocotea polyantha (Nees & Mart.) Mez",
 "TaxonKey is Nymphoides Hill",
 "TaxonKey is Gunnera L.",
 "TaxonKey is Callicarpa L.",
 "TaxonKey is Sapium Jacq.",
 "TaxonKey is Tragia lobata Wall.",
 "TaxonKey is Bauhinia Plum. ex L.",
 "TaxonKey is Byttneria Loefl.",
 "TaxonKey is Tambourissa Sonner",
 "TaxonKey is Tragia rupestris var. lobata Müll.Arg.",
 "TaxonKey is Ribes L.",
 "TaxonKey is Aegiphyla Steud.",
 "TaxonKey is Ficus L.",
 "TaxonKey is Nepeta L.",
 "TaxonKey is Ocotea Aubl.",
 "TaxonKey is Ocotea membranacea (Sw.) R.A.Howard"
 ]
 },
 "HasCoordinate is true"
 ]
}

 The dataset includes 538617 records from 832 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007519-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fh72h2
title: Occurrence Download

description: A dataset containing 30808 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Material citation, Specimen, Fossil, Living Specimen, Occurrence evidence)",
 "Continent is one of (North America, South America)",
 "Issue is one of (Coordinate rounded, Coordinate out of range, Geodetic datum assumed WGS84, Continent derived from coordinates, Continent derived from country, Continent country mismatch, Continent coordinate mismatch, Country derived from coordinates, Country mismatch, Country coordinate mismatch)",
 "OccurrenceStatus is Present",
 "TaxonKey is Ramphocelus bresilia (Linnaeus, 1766)",
 "Year 1946-2023"
 ]
}

 The dataset includes 30808 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047363-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tdvue2
title: Occurrence Download

description: A dataset containing 1668 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Amytornis goyderi (Gould, 1875)"
 ]
}

 The dataset includes 1668 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025567-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3k3dft
title: Occurrence Download

description: A dataset containing 134288 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Ceratophyllaceae)"
 ]
}

 The dataset includes 134288 records from 1142 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025582-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9vzdmn
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-180 -90, 180 -90, 180 90, -180 90, -180 -90))",
 "Depth is greater than or equal to 0m",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "TaxonKey is Dermochelyidae",
 "CoordinateUncertaintyInMeters is less than 1e+05"
 ]
}

 The dataset includes 125 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063111-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jhm6y2
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Loefgrenianthus blanche-amesiae (Loefgr.) Hoehne)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063112-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00010414
title: AMR Triage

description: Background
With high burden of antimicrobial resistance and steep increase in watch antibiotics in low and low-middle income countries (LMICs), a major hurdle in antibiotic stewardship measures is limited diagnostic capabilities.  We aim to develop an AI tool to calculate a patient’s probability of having or developing antibiotic resistance based on features such as the geography, patient characteristics and infection type features, with focus on any bacterial infection (excluding tuberculosis). 

Methods
A prediction model would be built in the form of a webtool:
1.	Variables include: Country, Specimen/Isolate date, Age, Patient location, Infection type, Causative pathogen, acquisition type, Antibiotic susceptibility results, genotyping results among others.
2.	Data sources: Data from LMICs from the Pfizer’s ATLAS program and Venatorx’s GEARS 
3.	Prediction model:  Using the surveillance data mentioned above, the best performing model would be selected to predict likelihood of resistances. Missing priors would be obtained from other publicly available surveillance/published results from well-powered studies. 

Expected Results
A web based triage tool based on analysis results, providing country or continent specific (depending on the data coverage) prediction of antibiotic resistance and list of safe antibiotics e.g. a list of highest probable pathogens and antibiotic resistances and, a list of recommended antibiotics for a 60-year old patient suspected to have contracted a nosocomial urinary tract infection in a medical ward in East Africa. Validation and performance evaluation would be planned as a next phase using available hospital level data in LMICs.    


Expected use of the results

The “AMR-triage” will be a readily available user-friendly tool for clinicians in any outpatient or inpatient setting. It will optimize the use of limited resources for laboratory testing, prioritizing patients to be tested. The tool will guide the empirical treatment and red flag any inappropriate antibiotic prescription, thus supporting antibiotic stewardship efforts.
DOI: 10.15468/dl.2s6cbu
title: Occurrence Download

description: A dataset listing the 14129 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "Geometry POLYGON((0.61267 42.88222,0.29168 41.37606,0.55271 40.50834,0.90544 40.43779,1.38868 40.92103,2.30226 41.11856,3.25111 41.63355,3.4698 41.81697,3.59678 42.27905,3.55798 42.43425,2.92659 42.51891,0.61267 42.88222))",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset's 14129 records were derived from 191 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063108-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cay5kb
title: Occurrence Download

description: A dataset containing 544 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Cuon alpinus (Pallas, 1811)"
 ]
}

 The dataset includes 544 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063114-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gupgtn
title: Occurrence Download

description: A dataset containing 1048 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "GadmGid is USA.48_1",
 "TaxonKey is one of (Vaccinium membranaceum var. membranaceum, Vaccinium membranaceum var. rigidum (Hook.) Fernald, Vaccinium ovalifolium var. membranaceum H.Boissieu, Vaccinium membranaceum Douglas ex Hook., Vaccinium membranaceum Douglas, Vaccinium membranaceum Douglas ex Torr.)"
 ]
}

 The dataset includes 1048 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063113-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00010412
title: Pharyngitis Data Challenge

description: Pharyngitis, a prevalent medical issue that accounts for millions of paediatric outpatient visits annually, has a multitude of infectious aetiologies. Although viral infections cause most cases, there is a possibility of more severe outcomes in cases involving bacterial infections. Group A Streptococcus (GAS) is the most significant bacterial species, although other streptococci, namely groups C and G, can also be causative. Fusobacterium necrophorum, Corynebacterium diphtheriae and Neisseria gonorrhoeae may also cause the disease, with varying clinical manifestations and treatment approaches. The diversity of aetiologies and resistance to commonly prescribed antibiotics present challenges to empirical therapy. The problem of emerging and re-emerging antimicrobial resistance patterns is also concrete in the context of bacterial pharyngitis. This is exemplified by the case of GAS resistant to macrolides, which has been included in the updated 2024 version of the WHO priority list of pathogens of public health importance due to its increasing prevalence in different parts of the world. A comprehensive understanding of the resistance patterns exhibited by the diverse range of bacterial species involved in pharyngitis would undoubtedly prove invaluable to clinicians. Consequently, an evidence-based decision would have a substantial impact on the rational use of antibiotics as a primary effective approach to addressing antimicrobial resistance. The objective of this study is to analyse the antimicrobial susceptibility profiles of the approximately 20,000 isolates belonging to the species that can cause human pharyngitis, which are included in the Vivli AMR-Registry dataset. Furthermore, the objective is to incorporate data from reports published after 2022 and to ascertain the most probable underlying mechanism of resistance based on the susceptibility profiles. The analysis of the data, stratified by region, country and year, will provide the scientific community with valuable insights that can inform more rational antibiotic use. A web-based application will be made available to physicians and other healthcare professionals, as an additional tool to make informed decisions regarding drug selection based on reliable data.
DOI: 10.5517/ccdc.csd.cc2jy7lb
title: CCDC 2351802: Experimental Crystal Structure Determination

description: Related Article: Yuting Yan|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jy7xn
title: CCDC 2351812: Experimental Crystal Structure Determination

description: Related Article: Hao Zhong|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jy8sk
title: CCDC 2351839: Experimental Crystal Structure Determination

description: Related Article: Dong-En Wu|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jy8tl
title: CCDC 2351840: Experimental Crystal Structure Determination

description: Related Article: Dong-En Wu|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jyk13
title: CCDC 2352095: Experimental Crystal Structure Determination

description: Related Article: Ritchie Hernandez, Milan Gembicky|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jylz2
title: CCDC 2352155: Experimental Crystal Structure Determination

description: Related Article: Schwarzer, Anke|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jyndk
title: CCDC 2352199: Experimental Crystal Structure Determination

description: Related Article: kurcinaa|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jyq6f
title: CCDC 2352255: Experimental Crystal Structure Determination

description: Related Article: Ahmed Selmi|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2j7n7p
title: CCDC 2331052: Experimental Crystal Structure Determination

description: Related Article: Siobhan R. Temple, Jinkui Tang, Graham J. Tizzard, Akseli Mansikkamäki, Richard A. Layfield|2024|Dalton Trans.|53|12460|doi:10.1039/D4DT01835D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jysw5
title: CCDC 2352338: Experimental Crystal Structure Determination

description: Related Article: Merzweiler, Kurt, Wagner, Christoph|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2j7n6n
title: CCDC 2331051: Experimental Crystal Structure Determination

description: Related Article: Siobhan R. Temple, Jinkui Tang, Graham J. Tizzard, Akseli Mansikkamäki, Richard A. Layfield|2024|Dalton Trans.|53|12460|doi:10.1039/D4DT01835D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2j7n8q
title: CCDC 2331053: Experimental Crystal Structure Determination

description: Related Article: Siobhan R. Temple, Jinkui Tang, Graham J. Tizzard, Akseli Mansikkamäki, Richard A. Layfield|2024|Dalton Trans.|53|12460|doi:10.1039/D4DT01835D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2j7n9r
title: CCDC 2331054: Experimental Crystal Structure Determination

description: Related Article: Siobhan R. Temple, Jinkui Tang, Graham J. Tizzard, Akseli Mansikkamäki, Richard A. Layfield|2024|Dalton Trans.|53|12460|doi:10.1039/D4DT01835D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jyyxc
title: CCDC 2352494: Experimental Crystal Structure Determination

description: Related Article: Amanda D. A. Hill and Joseph Wright and Christopher J. Pickett|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jyyyd
title: CCDC 2352495: Experimental Crystal Structure Determination

description: Related Article: Joseph Wright and Christopher J. Pickett|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.