cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.kyj3xh
title: Occurrence Download

description: A dataset containing 39067323 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico"
 ]
}

 The dataset includes 39067323 records from 4547 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030097-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5285/a79fcb9ab0c443fc86d453cc064759b1
title: ForestScan project: Unpiloted Aerial Vehicle LiDAR Scanning (UAV-LS) data of FBRMS-02: Station d’Etudes des Gorilles et Chimpanzés, Lopé National Park, Gabon, June 2022, Version 2.0

description: This dataset contains point cloud data (a set of data points in a 3D coordinate system) which were collected using a RIEGL miniVUX1-DL LiDAR scanner mounted on a DELAIR DT26X Unpiloted Aerial Vehicle (UAV). The data was collected in June 2022 as part of the ForestScan project. The person responsible for the data collection was Dr. Iain McNicol from the University of Edinburgh, who collected and processed the data.
DOI: 10.15468/dl.xuw2ab
title: Occurrence Download

description: A dataset containing 17535 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neovison vison",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 17535 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017470-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rqvfkj
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Empidonax flaviventris)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017472-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9d8cb7
title: Occurrence Download

description: A dataset containing 642 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neocaridina davidi"
 ]
}

 The dataset includes 642 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017473-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hcxm6j
title: Occurrence Download

description: A dataset containing 718 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Sudan",
 "OccurrenceStatus is Present",
 "TaxonKey is Sesamum indicum"
 ]
}

 The dataset includes 718 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017474-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15082867
title: HD-MEA data for Human neuron subtype programming through combinatorial patterning with scRNA-seq readouts

description: This dataset is part of the electrophysiological characterization from the publication "Human neuron subtype programming through combinatorial patterning with scRNA-seq readouts". The data was recorded on high-density microelectrode arrays (HD-MEAs), subsequently spike-sorted using Kilosort2.5, quality-controlled using Bombcell and finally analyzed using the DeePhys toolbox. All intermediary files are still available, however, the raw data was too large to upload. 

 

To work with this data, please follow the tutorials on our Github page. 

 

It also contains the template matrices to go with the raw morphology plots in the supplement. The code to analyze them will be published shortly.
DOI: 10.5281/zenodo.15082868
title: HD-MEA data for Human neuron subtype programming through combinatorial patterning with scRNA-seq readouts

description: This dataset is part of the electrophysiological characterization from the publication "Human neuron subtype programming through combinatorial patterning with scRNA-seq readouts". The data was recorded on high-density microelectrode arrays (HD-MEAs), subsequently spike-sorted using Kilosort2.5, quality-controlled using Bombcell and finally analyzed using the DeePhys toolbox. All intermediary files are still available, however, the raw data was too large to upload. 

 

To work with this data, please follow the tutorials on our Github page. 

 

It also contains the template matrices to go with the raw morphology plots in the supplement. The code to analyze them will be published shortly.
DOI: 10.34810/data2454
title: RNA-seq of primary intestinal subepithelial fibroblasts (ISEMFs)

description: This dataset contains single-cell RNA-sequencing (scRNA-seq) data from primary mouse intestinal subepithelial fibroblasts, generated to characterize the stromal heterogeneity relevant to epithelial repair mechanisms. The fibroblasts were isolated from intestinal tissue and cultured on plastic for 48 hours prior to library preparation using the 10x Genomics Chromium platform (v3 chemistry). The primary objective of this dataset is to identify transcriptionally distinct fibroblast subpopulations involved in coordinating epithelial migration and tissue integrity in vitro. These data support the study of physical and paracrine epithelial–stromal interactions during intestinal gap closure using a 2D co-culture model with organoid-derived epithelial monolayers.
description: Description:
This dataset contains single-cell RNA-sequencing data generated from intestinal subepithelial myofibroblasts (ISEMFs), collected as part of the MARTINEZELE_01 subproject. Sequencing was performed by CNAG-CRG using Illumina technology. The raw data files (.fastq.gz) include read pairs from one sample (AX0801) and are accompanied by MD5 checksums for integrity verification. A quality control report (MARTINEZELE_01_Sample_Stats.pdf) and summary spreadsheet (MARTINEZELE_01.xls) are also provided.
Organism:
Mus musculus
Tissue:
Intestinal subepithelial fibroblasts
Technology:
Single-cell RNA sequencing (scRNA-seq)
Sequencing platform:
Illumina (specific instrument not specified, can be inferred from CNAG metadata if needed)
Sample name / ID:
AX0801 – ISEMFs 18-19-21th pool
File list:
• Paired-end FASTQ files (*_1.fastq.gz, *_2.fastq.gz)
• MD5 checksum files
• QC report (PDF)
• Sample sheet (XLS)
Date of sequencing:
January 21 to February 8, 2022
Sequencing center:
Centro Nacional de Análisis Genómico (CNAG-CRG), Barcelona, Spain
DOI: 10.15468/dl.2cgbzp
title: Occurrence Download

description: A dataset containing 2830 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sida acuta",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2830 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017475-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57760/sciencedb.27823
title: RNA-seq analysis of Hsf23a-overexpressing and Hsf23b-overexpressing maize plants for article "Alternative splicing of ZmHsf23 modulates maize heat tolerance by regulating sHSPs and TIL1 expression"
title: RNA-seq analysis of Hsf23a-overexpressing and Hsf23b-overexpressing maize plants for article "Alternative splicing of ZmHsf23 modulates maize heat tolerance by regulating sHSPs and TIL1 expression"

description: The WT, OE23L and OE23S maize seedlings that without or with 45 °C HS treatment for 1 h were used for RNA-seq. Three biological replicates of 6 samples were used to transcriptome profiling.Total RNA was extracted from the leaves using Total RNA Extraction Reagent (Vazyme). Transcriptome sequencing and data analysis were performed by Suzhou GENEWIZ Biotechnology Ltd (Suzhou, Jiangsu, China). The RNA-seq datasets also have been deposited in the National Center for Biotechnology Information (http://www.ncbi.nlm.nih.gov/) under accession number PRJNA1101208. 
description: The WT, OE23L and OE23S maize seedlings that without or with 45 °C HS treatment for 1 h were used for RNA-seq. Three biological replicates of 6 samples were used to transcriptome profiling.Total RNA was extracted from the leaves using Total RNA Extraction Reagent (Vazyme). Transcriptome sequencing and data analysis were performed by Suzhou GENEWIZ Biotechnology Ltd (Suzhou, Jiangsu, China). The RNA-seq datasets also have been deposited in the National Center for Biotechnology Information (http://www.ncbi.nlm.nih.gov/) under accession number PRJNA1101208.
DOI: 10.15468/dl.t6pw56
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salvelinus fontinalis",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 76 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017477-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.58jnrr
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Côte d’Ivoire",
 "OccurrenceStatus is Present",
 "TaxonKey is Terminalia leiocarpa"
 ]
}

 The dataset includes 116 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017479-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2yutkk
title: Occurrence Download

description: A dataset containing 389 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((125.43375 16.97039,123.52244 29.67499,112.84156 36.64565,103.50987 27.87611,102.83526 16.97039,113.96584 7.86355,125.43375 16.97039))",
 "TaxonKey is Castanopsis kawakamii"
 ]
}

 The dataset includes 389 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017478-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sebuf8
title: Occurrence Download

description: A dataset containing 15213 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Dissostichus mawsoni, Dissostichus eleginoides, Champsocephalus gunnari)",
 "Geometry POLYGON((180 -44.3,173 -44.3,173 -47.5,170 -47.5,157 -47.5,157 -45.9,150 -45.9,150 -47.5,143 -47.5,143 -45.8,140 -45.8,140 -44.5,137 -44.5,137 -43,135 -43,135 -41.7,131 -41.7,131 -40.1,115 -40.1,92 -40.1,92 -41.4,78 -41.4,78 -42.3,69 -42.3,69 -43.3,47 -43.3,47 -41.7,30 -41.7,12 -41.7,12 -40.3,10 -40.3,10 -38.3,-5 -38.3,-5 -38.9,-9 -38.9,-9 -40.2,-13 -40.2,-13 -41.4,-21 -41.4,-21 -42.5,-39 -42.5,-39 -40.7,-49 -40.7,-49 -48.6,-54 -48.6,-54 -55.7,-62.7972582608082 -55.7,-64 -55.7,-64 -57.8,-71 -57.8,-71 -58.9,-80 -58.9,-80 -40,-125 -40,-167 -40,-167 -42.6,-171 -42.6,-171 -44.3,-180 -44.3,-180 -90, 0 -90,180 -90,180 -44.3))"
 ]
}

 The dataset includes 15213 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017480-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vw27b4
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erysimum apenninum"
 ]
}

 The dataset includes 80 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017481-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2gkw86
title: CCDC 2281298: Experimental Crystal Structure Determination

description: Related Article: Michael Lange, Clemens Kühn, Anita Nair, Thomas Fuchß, Christoph Saal|2025|Eur.J.Pharm.Sci.|212|107174|doi:10.1016/j.ejps.2025.107174
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.29569703
title: Interplay between dynamic oceanic conditions and unique nickel–molybdenum sedimentary mineralization during the Cambrian Explosion

description: Around 520 million-year-ago, the period of complex life diversification (i.e., Cambrian Explosion), unique nickel-molybdenum (Ni-Mo) sulfide-rich black shales deposited in South China, providing a new window for tracking the evolution of ancient marine chemistry and habitable Earth as well as the relationship between them. Here, we analyzed these Ni-Mo-rich shales and compared them with other rocks from the same interval. We find that the oceanic redox condition underwent a significant shift—from oxygen-rich to hydrogen sulfide-rich—in the early Cambrian. This change, alone with metals supplied by simultaneous deep hydrothermal inputs, triggered the formation of Ni-Mo sulfides. The formation and burial of organic matter and sulfide associated with hydrothermal activity likely boosted atmospheric oxygen levels, feeding back to the further biological diversification during the Cambrian Explosion. Our work highlights the interconnectedness of hydrothermal activity, redox evolution, and biological innovation during this pivotal interval in Earth’s history.
DOI: 10.6084/m9.figshare.29569703.v1
title: Interplay between dynamic oceanic conditions and unique nickel–molybdenum sedimentary mineralization during the Cambrian Explosion

description: Around 520 million-year-ago, the period of complex life diversification (i.e., Cambrian Explosion), unique nickel-molybdenum (Ni-Mo) sulfide-rich black shales deposited in South China, providing a new window for tracking the evolution of ancient marine chemistry and habitable Earth as well as the relationship between them. Here, we analyzed these Ni-Mo-rich shales and compared them with other rocks from the same interval. We find that the oceanic redox condition underwent a significant shift—from oxygen-rich to hydrogen sulfide-rich—in the early Cambrian. This change, alone with metals supplied by simultaneous deep hydrothermal inputs, triggered the formation of Ni-Mo sulfides. The formation and burial of organic matter and sulfide associated with hydrothermal activity likely boosted atmospheric oxygen levels, feeding back to the further biological diversification during the Cambrian Explosion. Our work highlights the interconnectedness of hydrothermal activity, redox evolution, and biological innovation during this pivotal interval in Earth’s history.
DOI: 10.15468/dl.mhdu57
title: Occurrence Download

description: A dataset containing 50548 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cypripedium acaule"
 ]
}

 The dataset includes 50548 records from 231 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017381-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2mjqqm
title: CCDC 2429151: Experimental Crystal Structure Determination

description: Related Article: Surjya Kumar Bora, Anil K. Saikia|2025|RSC Advances|15|21257|doi:10.1039/D5RA03630E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mjqrn
title: CCDC 2429152: Experimental Crystal Structure Determination

description: Related Article: Surjya Kumar Bora, Anil K. Saikia|2025|RSC Advances|15|21257|doi:10.1039/D5RA03630E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mplgd
title: CCDC 2433824: Experimental Crystal Structure Determination

description: Related Article: Yue Yuan, Liangliang Huang, Yang Lu, Xin Shao, Yanfeng Bi|2025|CrystEngComm|27|4844|doi:10.1039/D5CE00458F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.ghhm92
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Peltariopsis drabicarpa"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017482-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.95tr6q
title: Occurrence Download

description: A dataset containing 718 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Sudan",
 "OccurrenceStatus is Present",
 "TaxonKey is Sesamum indicum"
 ]
}

 The dataset includes 718 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017483-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vy22ps
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bromus erectus glabrescens, Bromus erectus glabriflorus, Bromus erectus glabrifolius, Bromus erectus glaucus, Bromus erectus glaucus, Bromus erectus gracilis, Bromus erectus hirsutus, Bromus erectus hirsutus, Bromus erectus inermiformis, Bromus erectus laxus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017485-250711103210423/datasets/export for details.
DOI: 10.15468/dl.guep8n
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Syzygium cumini",
 "Country is Bolivia (Plurinational State of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 16 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017484-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3t8n73
title: Occurrence Download

description: A dataset containing 723 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ficus palmata",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 723 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017487-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.en6zfc
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Marcusenius macrolepidotus macrolepidotus"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017486-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15839003
title: A Benchmark Dataset for Bus Travel and Dwell Time Prediction

description: This repository contains the dataset for the paper "A Benchmark Dataset for Bus Travel and Dwell Time Prediction", to be presented at IEEE ITSC 2025.

Abstract:

The prediction of bus travel and dwell times using machine learning has been extensively studied, resulting in many different approaches. However, due to the absence of standardized benchmarks, the field currently lacks meaningful comparison of model performance. We compile and release a benchmark based on three years of automated vehicle location (AVL) data covering the Dutch public transport network. This includes data excerpts representative of different evaluation scenarios (rural, urban, small and large cities) as well as a methodology for calculating metrics in a reproducible manner.

Acknowledgements:

The dataset contains "Unofficial archive of travel information Dutch Public Transport" by Adriaan van Natijne, which is licensed under the Creative Commons Attribution 4.0 license.

This research was funded by the Ingolstadt public transit authority (Verkehrsverbund Großraum Ingolstadt, VGI) with funds from the German Federal Ministry of Transport (Bundesministerium für Verkehr, BMV) as part of the research project VGI newMIND.