cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7458803.v3
title: Estimation of Heterogeneous Individual Treatment Effects With Endogenous Treatments

description: This article estimates <i>individual treatment effects</i> (ITE) and its probability distribution in a triangular model with binary-valued endogenous treatments. Our estimation procedure takes two steps. First, we estimate the counterfactual outcome and hence, the ITE for every observational unit in the sample. Second, we estimate the ITE density function of the whole population. Our estimation method does not suffer from the ill-posed inverse problem associated with inverting a nonlinear functional. Asymptotic properties of the proposed method are established. We study its finite sample properties in Monte Carlo experiments. We also illustrate our approach with an empirical application assessing the effects of 401(k) retirement programs on personal savings. Our results show that there exists a small but statistically significant proportion of individuals who experience negative effects, although the majority of ITEs is positive. Supplementary materials for this article are available online.
DOI: 10.5281/zenodo.10535653
title: CEX Project - Dataset and Gold Standard

description: The files represent the new version of Cioffi, A. (2022) Data for Testing and Evaluating References Extraction and Parsing Tools (1.0) https://doi.org/10.5281/zenodo.6182066. The 56 files of Cioffi, 2022 were corrected and additional 56 PDFs were manually annotated and aligned to the project guidelines. The TEI files of the whole dataset (112 documents) can be found under GoldStandard_TEI zip folder, while the PDFs are in GoldStandard_PDF folder.GoldStandard.txt contains the list of the bibliographic references of each article. When an entry is marked as "Restricted", it means the correspondent PDF is not in Open Access format, thus it is not shared in the present publication and cannot be found in the GoldStandard_PDF folder, the other Open Access papers are shared in it.

The code can be found at Pagnotta, O. (2024). olgagolgan/CEX-Project: CEX Project Code (software). Zenodo. https://doi.org/10.5281/zenodo.10638757.

The output dataset of Anystyle, GROBID and OUTCITE can be found here  Pagnotta, O. (2024). CEX Project - Output Dataset (Anystyle, GROBID, OUTCITE) (Version 1) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.10524898.

The annotated training dataset for GROBID can be found here Pagnotta, O. (2024). CEX Project - GROBID annotation aligned Gold Standard (Version 1) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.10529646.

The trained GROBID citation models can be found here Pagnotta, O. (2024). CEX Project - trained GROBID citation models. Zenodo. https://doi.org/10.5281/zenodo.10529709.

Some results can be found here Pagnotta, O. (2023). Investigating the performance of GROBID and OUTCITE (Version v1). Zenodo. https://doi.org/10.5281/zenodo.10036455.

The final service can be found here Pagnotta, O. and Paolini, L. (2024). opencitations/cec: alpha version (service). Zenodo. https://doi.org/10.5281/zenodo.10635630.

The work is part of my Thesis research for the Digital Humanities and Digital Knowledge Master's Course at University of Bologna.
DOI: 10.6084/m9.figshare.13226015.v1
title: Additional file 3 of Heterologous expression of heat stress-responsive AtPLC9 confers heat tolerance in transgenic rice

description: Additional file 3: Supplemental Data Set 3: List of genes differentially expressed between OE7 and WT without HS treatment.
DOI: 10.6084/m9.figshare.19526098
title: Data supporting m6A methylation mediates LHPP acetylation as a tumour aerobic glycolysis suppressor to improve the prognosis of gastric cancer

description: Clinical Information for Tissue microarrays
DOI: 10.6084/m9.figshare.13226027.v1
title: Additional file 7 of Heterologous expression of heat stress-responsive AtPLC9 confers heat tolerance in transgenic rice

description: Additional file 7.
DOI: 10.6084/m9.figshare.7943312
title: Additional file 1: of The karyotype of Aegilops geniculata and its use to identify both addition and substitution lines of wheat

description: Table S1. The 240 SNP markers shared by Sub L-1, Sub L-2, Sub L-3 and AS6. (XLSX 5838 kb)
DOI: 10.6084/m9.figshare.19526146
title: Data supporting m6A methylation mediates LHPP acetylation as a tumour aerobic glycolysis suppressor to improve the prognosis of gastric cancer

description: Clinical Information for Tissue microarrays
DOI: 10.6084/m9.figshare.19526152
title: Data supporting m6A methylation mediates LHPP acetylation as a tumour aerobic glycolysis suppressor to improve the prognosis of gastric cancer

description: Clinical Information for Tissue microarrays
DOI: 10.6084/m9.figshare.14798983.v1
title: The Holdout Randomization Test for Feature Selection in Black Box Models

description: We propose the holdout randomization test (HRT), an approach to feature selection using black box predictive models. The HRT is a specialized version of the conditional randomization test (CRT) that uses data splitting for feasible computation. The HRT works with any predictive model and produces a valid <i>p</i>-value for each feature. To make the HRT more practical, we propose a set of extensions to maximize power and speed up computation. In simulations, these extensions lead to greater power than a competing knockoffs-based approach, without sacrificing control of the error rate. We apply the HRT to two case studies from the scientific literature where heuristics were originally used to select important features for predictive models. The results illustrate how such heuristics can be misleading relative to principled methods like the HRT. Code is available at https://github.com/tansey/hrt. Supplementary materials for this article are available online.
DOI: 10.18454/rulb.2024.50.15.1
title: Полевая структура семного состава значения слова «тоска» по материалам словарей русского языка

description: Russian Linguistic Bulletin, Выпуск 2 (50) 2024
DOI: 10.18454/rulb.2024.50.1.1
title: Функции лексем в конфликтной ситуации

description: Russian Linguistic Bulletin, Выпуск 2 (50) 2024
DOI: 10.25549/usctheses-ouc11672471
title: DSW Grand Challenge Final Capstone Paper
DOI: 10.6084/m9.figshare.12177519.v1
title: Additional file 8 of Role of the ADCY9 gene in cardiac abnormalities of the Rubinstein-Taybi syndrome

description: Additional file 8. Supplementary Table 4
DOI: 10.6084/m9.figshare.12177513.v1
title: Additional file 7 of Role of the ADCY9 gene in cardiac abnormalities of the Rubinstein-Taybi syndrome

description: Additional file 7. Supplementary Table 3
DOI: 10.6084/m9.figshare.12177513
title: Additional file 7 of Role of the ADCY9 gene in cardiac abnormalities of the Rubinstein-Taybi syndrome

description: Additional file 7. Supplementary Table 3
DOI: 10.6084/m9.figshare.12177519
title: Additional file 8 of Role of the ADCY9 gene in cardiac abnormalities of the Rubinstein-Taybi syndrome

description: Additional file 8. Supplementary Table 4
DOI: 10.24403/jp.1330380
title: Friedrich Christian Heinrich Schönheit und die Flora von Thüringen / Friedrich Karl Meyer
DOI: 10.24403/jp.1330381
title: Eine neue Sorbus aus Thüringen / Rolf Reuther
DOI: 10.6084/m9.figshare.12177498.v1
title: Additional file 3 of Role of the ADCY9 gene in cardiac abnormalities of the Rubinstein-Taybi syndrome

description: Additional file 3 Supplementary Table 1. qRT-PCR primers for Zebrafish
DOI: 10.6084/m9.figshare.12177504
title: Additional file 6 of Role of the ADCY9 gene in cardiac abnormalities of the Rubinstein-Taybi syndrome

description: Additional file 6 Supplementary Table 2. Differential gene expression analysis comparing zebrafish with or without adcy9 knockdown
DOI: 10.6084/m9.figshare.20041915.v1
title: Development of UPLC-MS/MS method for determining hainanmycin in foods of animal origin

description: Hainanmycin is a polyether antibiotic. Toxicological studies have shown the adverse effects of hainanmycin on animals and humans. At present, no study is available on the detection of hainanmycin in edible tissues of animals. Hence, a fast and accurate detection method for hainanmycin is essential. This study aimed to develop a new analytical method based on ultra-high-performance liquid chromatography-tandem mass spectrometry to detect hainanmycin in 10 matrices, including milk, eggs, fat, kidney, muscles and livers of chicken, beef and sheep. The limit of detection and the limit of quantitation of the 10 matrices were 0.1–0.4 μg/kg and 0.25–1 μg/kg, respectively, and were far below the maximum residue limits of other polyether anticoccidial drugs (1–150 μg/kg). The recoveries of hainanmycin ranged from 79% to 105%, and the relative standard deviation ranged from 2.8% to 12.0%. The research results prove that the proposed method is operational and simple in detecting hainanmycin, and has high precision and accuracy in a variety of matrices.
DOI: 10.6084/m9.figshare.20035814
title: Additional file 6 of Comprehensive analysis of the MYB transcription factor gene family in Morus alba

description: Additional file 6: Table S5. Expression matrix of MaMYBs based on RNA-seq.
DOI: 10.6084/m9.figshare.12695775
title: Additional file 14 of Multi-omics sequencing provides insight into floral transition in Catalpa bungei. C.A. Mey

description: Additional file 14: Table S5. Top 20 KEGG pathways significantly enriched with DEGs in three different stages between EF and NF.
DOI: 10.6084/m9.figshare.20041915
title: Development of UPLC-MS/MS method for determining hainanmycin in foods of animal origin

description: Hainanmycin is a polyether antibiotic. Toxicological studies have shown the adverse effects of hainanmycin on animals and humans. At present, no study is available on the detection of hainanmycin in edible tissues of animals. Hence, a fast and accurate detection method for hainanmycin is essential. This study aimed to develop a new analytical method based on ultra-high-performance liquid chromatography-tandem mass spectrometry to detect hainanmycin in 10 matrices, including milk, eggs, fat, kidney, muscles and livers of chicken, beef and sheep. The limit of detection and the limit of quantitation of the 10 matrices were 0.1–0.4 μg/kg and 0.25–1 μg/kg, respectively, and were far below the maximum residue limits of other polyether anticoccidial drugs (1–150 μg/kg). The recoveries of hainanmycin ranged from 79% to 105%, and the relative standard deviation ranged from 2.8% to 12.0%. The research results prove that the proposed method is operational and simple in detecting hainanmycin, and has high precision and accuracy in a variety of matrices.
DOI: 10.6084/m9.figshare.20035790.v1
title: Additional file 2 of Comparative transcriptomic analysis reveals the molecular mechanism underlying seedling biomass heterosis in Brassica napus

description: Additional file 2: Table S1. Phenotypic data of T1 are expressed as mean ± SD, T1 refers to 21 DAS. The data represents the results of three biological repetitions. Table S2. Phenotypic data of T2 are expressed as mean ± SD, T2 refers to 24 DAS. The data represents the results of three biological repetitions. Table S3. Quality evaluation of RNA-seq reads and mapped to reference genome. Table S4. Information on upregulated and downregulated DEGs of 21 DAS hybrid F1 (AM, CM, HM, HW) and their parents (A, C, H, M, W). Table S5. Information on upregulated and downregulated DEGs of 24 DAS hybrid F1 (AM, CM, HM, HW) and their parents (A, C, H, M, W). Table S6. Specific gene information for the classification of expression patterns of 12 types of ELD genes at 21 DAS. Table S7. Specific gene information for the classification of expression patterns of 12 types of ELD genes at 24 DAS. Table S8. Results of significant GO enrichment of F1 relative to the parent of the parental-ELD gene at 21 DAS. Table S9. Results of significant GO enrichment of F1 relative to the parent of the parental-ELD gene at 24 DAS. Table S10. Information on DEGs of strong hybrids and weak hybrids at 21 DAS. Table S11. The results of the significantly enriched GO terms of the DEGs shared by the two pairs of strong and weak hybrids at 21 DAS. Table S12. The results of the significantly enriched KEGG pathways of the DEGs shared by the two pairs of strong and weak hybrids at 21 DAS. Table S13. Information on DEGs of strong hybrids and weak hybrids at 24 DAS. Table S14. The results of the significantly enriched GO terms of the DEGs shared by the two pairs of strong and weak hybrids at 24 DAS. Table S15. The results of the significantly enriched KEGG pathways of the DEGs shared by the two pairs of strong and weak hybrids at 24 DAS. Table S16. Total genes in the yellow module. Table S17. KEGG results of significant enrichment of genes in the yellow module. Table S18. Hub genes in the yellow module. Table S19. GO terms that were significantly enriched with respect to hub genes in the yellow module. Table S20. Specific information about the sequence of the quantitative primers of randomly selected genes.
DOI: 10.6084/m9.figshare.20035814.v1
title: Additional file 6 of Comprehensive analysis of the MYB transcription factor gene family in Morus alba

description: Additional file 6: Table S5. Expression matrix of MaMYBs based on RNA-seq.
DOI: 10.6084/m9.figshare.12695784
title: Additional file 17 of Multi-omics sequencing provides insight into floral transition in Catalpa bungei. C.A. Mey

description: Additional file 17: Table S8. The correlation coefficients of expression of mRNAs between the EF and NF during three developmental periods. r is the correlation coefficient of expression of the mRNAs.
DOI: 10.6084/m9.figshare.12695781.v1
title: Additional file 16 of Multi-omics sequencing provides insight into floral transition in Catalpa bungei. C.A. Mey

description: Additional file 16: Table S7. Summary of DEGs classified into five pathways.
DOI: 10.6084/m9.figshare.20035799.v1
title: Additional file 1 of Comprehensive analysis of the MYB transcription factor gene family in Morus alba

description: Additional file 1: Table S1. Primers used in this study.
DOI: 10.6084/m9.figshare.12695790.v1
title: Additional file 19 of Multi-omics sequencing provides insight into floral transition in Catalpa bungei. C.A. Mey

description: Additional file 19: Table S10. Summary of AS events from DEGs in EF.
DOI: 10.6084/m9.figshare.12695787
title: Additional file 18 of Multi-omics sequencing provides insight into floral transition in Catalpa bungei. C.A. Mey

description: Additional file 18: Table S9. Summary of identification of splicing junctions using NGS and SMRT data.
DOI: 10.6084/m9.figshare.12695799.v1
title: Additional file 21 of Multi-omics sequencing provides insight into floral transition in Catalpa bungei. C.A. Mey

description: Additional file 21: Table S12. Summary of primers used in this study.
DOI: 10.6084/m9.figshare.13226315
title: Additional file 3 of Pluripotent stem cell-derived CAR-macrophage cells with antigen-dependent anti-cancer cell functions

description: Additional file 3: Table S1. Primer sequences for qRT-PCR.
DOI: 10.6084/m9.figshare.13226318.v1
title: Additional file 4 of Pluripotent stem cell-derived CAR-macrophage cells with antigen-dependent anti-cancer cell functions

description: Additional file 3: Table S2. RNA-sequencing data analysis of iMac during the differentiation process from iPSCs.
DOI: 10.15156/bio/sh0942271.10fu
title: SH0942271.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0942272.10fu
title: SH0942272.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0942273.10fu
title: SH0942273.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0942274.10fu
title: SH0942274.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0942275.10fu
title: SH0942275.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0942276.10fu
title: SH0942276.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0942277.10fu
title: SH0942277.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.