cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/129038
title: Singlebeam Echosounder data collected during research cruise AR25 using a Knudsen 3260 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134465
title: Speedlog data collected during research cruise EN622 using a Furuno DS-50 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7729955.v1
title: Additional file 12: of Polygenic and sex specific architecture for two maturation traits in farmed Atlantic salmon

description: All significant SNP identified for marine maturation, using only male fish. The table shows physically co-located genes and their distance from the associated loci (in bp). Gene identifiers, symbol and names are provided. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7729943
title: Additional file 1: of Molecular cytogenetic analysis of genome-specific repetitive elements in Citrus clementina Hort. Ex Tan. and its taxonomic implications

description: List of the annotations and genome proportion of clusters in C. clementina. (XLSX 28 kb)
DOI: 10.7284/129033
title: Speedlog data collected during research cruise AR25 using a JRC JLN-550 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134469
title: Timeserver data collected during research cruise EN622 using a Spectracom SecureSync instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7729943.v1
title: Additional file 1: of Molecular cytogenetic analysis of genome-specific repetitive elements in Citrus clementina Hort. Ex Tan. and its taxonomic implications

description: List of the annotations and genome proportion of clusters in C. clementina. (XLSX 28 kb)
DOI: 10.7284/129037
title: SSV (Sound Speed Velocimeter) data collected during research cruise AR25 using a AML SmartX P1S2 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134461
title: TSG (Thermosalinograph) data collected during research cruise EN622 using a Sea-Bird SBE-45 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129032
title: Water Temperature data collected during research cruise AR25 using a Sea-Bird SBE-48 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134468
title: TSG (Thermosalinograph) data collected during research cruise EN622 using a Sea-Bird SBE-21 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129031
title: TSG (Thermosalinograph) data collected during research cruise AR25 using a Sea-Bird SBE-45 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122257
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AR3 using a Hawaii UHDAS instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134470
title: Winch data collected during research cruise EN622 using a Markey DUSH-5 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122256
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AR3 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122187
title: GNSS (Global Navigation Satellite System) data collected during research cruise AR3 using a C&C C-Nav 3050 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122255
title: Gyrocompass data collected during research cruise AR3 using a Sperry NAVIGAT X MK 1 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122262
title: Multibeam Echosounder data collected during research cruise AR3 using a Kongsberg EM710 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122260
title: Radiometer data collected during research cruise AR3 using a Biospherical QSR-2150 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7729844
title: Additional file 7: of Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms

description: Table S4. Metadata for statistical associations. (CSV 349 kb)
DOI: 10.6084/m9.figshare.7729847
title: Additional file 8: of Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms

description: Table S5. Statistical associations of samples containing eukaryotes with metadata. (CSV 1 kb)
DOI: 10.6084/m9.figshare.7729850
title: Additional file 1: of A superiority of viral load over CD4 cell count when predicting mortality in HIV patients on therapy

description: BMCID_Data. Data sheet containing all anonymised data used in this analysis. (XLSX 250 kb)
DOI: 10.6084/m9.figshare.7729847.v1
title: Additional file 8: of Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms

description: Table S5. Statistical associations of samples containing eukaryotes with metadata. (CSV 1 kb)
DOI: 10.7284/122261
title: Radiometer data collected during research cruise AR3 using a Eppley RAD instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7729844.v1
title: Additional file 7: of Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms

description: Table S4. Metadata for statistical associations. (CSV 349 kb)
DOI: 10.6084/m9.figshare.7729850.v1
title: Additional file 1: of A superiority of viral load over CD4 cell count when predicting mortality in HIV patients on therapy

description: BMCID_Data. Data sheet containing all anonymised data used in this analysis. (XLSX 250 kb)
DOI: 10.7284/122254
title: Speedlog data collected during research cruise AR3 using a JRC JLN-550 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7729829
title: Additional file 5: of Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms

description: Table S3. Mapping-based abundance of eukaryote genomes in all samples. (CSV 24934 kb)
DOI: 10.6084/m9.figshare.7729829.v1
title: Additional file 5: of Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms

description: Table S3. Mapping-based abundance of eukaryote genomes in all samples. (CSV 24934 kb)
DOI: 10.7284/122133
title: Splitbeam Echosounder data collected during research cruise AR3 using a Kongsberg EK80 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7729811
title: Additional file 2: of Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms

description: Table S2. Detailed information about genome assemblies.(CSV 1 kb)
DOI: 10.7284/122258
title: SSV (Sound Speed Velocimeter) data collected during research cruise AR3 using a AML SmartX P1S2 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7729805
title: Additional file 1: of Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms

description: Table S1. Sequencing metadata for all infant and room metagenomic samples. (CSV 69 kb)
DOI: 10.6084/m9.figshare.7729811.v1
title: Additional file 2: of Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms

description: Table S2. Detailed information about genome assemblies.(CSV 1 kb)
DOI: 10.6084/m9.figshare.7729805.v1
title: Additional file 1: of Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms

description: Table S1. Sequencing metadata for all infant and room metagenomic samples. (CSV 69 kb)
DOI: 10.7284/122253
title: Water Temperature data collected during research cruise AR3 using a Sea-Bird SBE-48 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122252
title: TSG (Thermosalinograph) data collected during research cruise AR3 using a Sea-Bird SBE-45 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134658
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AR31-A using a Hawaii UHDAS instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134652
title: Fluorometer data collected during research cruise AR31-A using a WET Labs WETStar instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134657
title: GNSS (Global Navigation Satellite System) data collected during research cruise AR31-A using a C&C C-Nav 3050 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7729736
title: Additional file 7: of Insights from transcriptome profiling on the non-photosynthetic and stomatal signaling response of maize carbonic anhydrase mutants to low CO2

description: Transcription factors shown in Fig. 4 with family classification. The log-fold change (logFC) and false-discovery rate (FDR) are given for the differential expression analysis of ca1ca2 mutant vs. wild-type. (XLSX 17 kb)
DOI: 10.7284/134653
title: Gyrocompass data collected during research cruise AR31-A using a Sperry NAVIGAT X MK 1 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7729733
title: Additional file 6: of Insights from transcriptome profiling on the non-photosynthetic and stomatal signaling response of maize carbonic anhydrase mutants to low CO2

description: Gene IDs for Fig. 3. The average counts-per-million (CPM), normalized by edgeR, for wild-type plants is given for each gene and CO2 condition. The log-fold change (logFC) and false-discovery rate (FDR) are given for differential expression between mutant and wild-type at each CO2 condition. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7729736.v1
title: Additional file 7: of Insights from transcriptome profiling on the non-photosynthetic and stomatal signaling response of maize carbonic anhydrase mutants to low CO2

description: Transcription factors shown in Fig. 4 with family classification. The log-fold change (logFC) and false-discovery rate (FDR) are given for the differential expression analysis of ca1ca2 mutant vs. wild-type. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.7729733.v1
title: Additional file 6: of Insights from transcriptome profiling on the non-photosynthetic and stomatal signaling response of maize carbonic anhydrase mutants to low CO2

description: Gene IDs for Fig. 3. The average counts-per-million (CPM), normalized by edgeR, for wild-type plants is given for each gene and CO2 condition. The log-fold change (logFC) and false-discovery rate (FDR) are given for differential expression between mutant and wild-type at each CO2 condition. (XLSX 13 kb)
DOI: 10.7284/134660
title: Meteorological Station data collected during research cruise AR31-A using a Vaisala WXT520 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7729721
title: Additional file 4: of Insights from transcriptome profiling on the non-photosynthetic and stomatal signaling response of maize carbonic anhydrase mutants to low CO2

description: Differentially expressed genes involved in cell wall and carbohydrate metabolism, and genes encoding aquaporins. The average counts-per-million (CPM), normalized by edgeR, for wild-type plants is given for each gene and CO2 condition. The log-fold change (logFC) and false-discovery rate (FDR) are given for differential expression between mutant and wild-type at each CO2 condition. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.7729721.v1
title: Additional file 4: of Insights from transcriptome profiling on the non-photosynthetic and stomatal signaling response of maize carbonic anhydrase mutants to low CO2

description: Differentially expressed genes involved in cell wall and carbohydrate metabolism, and genes encoding aquaporins. The average counts-per-million (CPM), normalized by edgeR, for wild-type plants is given for each gene and CO2 condition. The log-fold change (logFC) and false-discovery rate (FDR) are given for differential expression between mutant and wild-type at each CO2 condition. (XLSX 19 kb)
DOI: 10.7284/134661
title: Meteorological Station data collected during research cruise AR31-A using a Vaisala WXT520 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134655
title: Radiometer data collected during research cruise AR31-A using a Biospherical QSR-2150 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7729697
title: Additional file 1: of Insights from transcriptome profiling on the non-photosynthetic and stomatal signaling response of maize carbonic anhydrase mutants to low CO2

description: Gene ontology terms of differentially expressed genes in ca1 and ca1ca2 mutants after two days at low CO2. GO term enrichment was calculated using the R package GOStats with a p-value cutoff of 0.05. Each sheet corresponds to ontology terms for Biological Process (BP), Cellular Compartment (CC), Molecular Function (MF) or KEGG. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.7729697.v1
title: Additional file 1: of Insights from transcriptome profiling on the non-photosynthetic and stomatal signaling response of maize carbonic anhydrase mutants to low CO2

description: Gene ontology terms of differentially expressed genes in ca1 and ca1ca2 mutants after two days at low CO2. GO term enrichment was calculated using the R package GOStats with a p-value cutoff of 0.05. Each sheet corresponds to ontology terms for Biological Process (BP), Cellular Compartment (CC), Molecular Function (MF) or KEGG. (XLSX 33 kb)
DOI: 10.7284/134656
title: Radiometer data collected during research cruise AR31-A using a Eppley RAD instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7729685
title: Additional file 11: of Insights from transcriptome profiling on the non-photosynthetic and stomatal signaling response of maize carbonic anhydrase mutants to low CO2

description: Differential expression analysis (mutant vs. wild-type) providing the log-fold change and false-discovery rate for all expressed genes in each CO2 condition. (XLSX 3040 kb)
DOI: 10.6084/m9.figshare.7729691
title: Additional file 12: of Insights from transcriptome profiling on the non-photosynthetic and stomatal signaling response of maize carbonic anhydrase mutants to low CO2

description: Primer sequences and IDs of genes selected for qRT-PCR validation. (XLSX 9 kb)
DOI: 10.7284/134651
title: Speedlog data collected during research cruise AR31-A using a JRC JLN-550 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7729685.v1
title: Additional file 11: of Insights from transcriptome profiling on the non-photosynthetic and stomatal signaling response of maize carbonic anhydrase mutants to low CO2

description: Differential expression analysis (mutant vs. wild-type) providing the log-fold change and false-discovery rate for all expressed genes in each CO2 condition. (XLSX 3040 kb)
DOI: 10.6084/m9.figshare.7729691.v1
title: Additional file 12: of Insights from transcriptome profiling on the non-photosynthetic and stomatal signaling response of maize carbonic anhydrase mutants to low CO2

description: Primer sequences and IDs of genes selected for qRT-PCR validation. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7729676
title: Additional file 1: of Imprint of parity and age at first pregnancy on the genomic landscape of subsequent breast cancer

description: Table S1. Systematic multivariate analysis of mutational load comparing nulliparous vs. parous, early parous vs. late parous and PABC vs. nulliparous patients. Table S2. Systematic multivariate analysis of breast cancer driver SNVs comparing nulliparous vs. parous, early parous vs. late parous and PABC vs. nulliparous patients. Table S3. Systematic multivariate analysis of breast cancer driver SCNAs comparing nulliparous vs. parous, early parous vs. late parous and PABC vs. nulliparous patients. Table S4. Clinicopathological features of nulliparous and parous patients included in the RNAseq analysis. Table S5. Differential expression analysis between nulliparous and parous patients using DEseq2 on raw counts data and controlling for age at diagnosis, pathological stage, molecular subtypes by IHC, histological subtypes. Table S6. Pathway analysis using the generally applicable gene-set enrichment (GAGE) method to identify significantly enriched pathways between nulliparous and parous patients. Table S7. Differential expression analysis between early and late parous patients using DEseq2 on raw counts data and controlling for age at diagnosis, pathological stage, molecular subtypes by IHC, histological subtypes. Table S8. Pathway analysis using the generally applicable gene-set enrichment (GAGE) method to identify significantly enriched pathways between early and late parous patients. Table S9. Systematic multivariate analysis of TILs levels comparing nulliparous vs. parous, early parous vs. late parous and PABC vs. nulliparous patients. Table S10. Clinicopathological features of nulliparous and PABC patients. Table S11. Pathway analysis using the generally applicable gene-set enrichment (GAGE) method to identify significantly enriched pathways between nulliparous and PABC patients. (XLSX 366 kb)
DOI: 10.7284/134648
title: Splitbeam Echosounder data collected during research cruise AR31-A using a Kongsberg EK80 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7729667
title: Additional file 1: of Transcriptome analysis reveals the role of the PCP pathway in fipronil and endotoxin-induced lung damage

description: Figure S1. Heat map analysis of the commonly expressed gene in LPS (CL), high dose (1/10th of LD50) of fipronil alone (F10) or in combination with LPS (FL10) and a low dose (1/20th of LD50) of fipronil alone (F20) or in combination with LPS (FL20) group. Figure S2-S4. PCP pathway generated by IPA in LPS (CL), high dose (1/10th of LD50) of fipronil alone (F10) or in combination with LPS (FL10) and a low dose (1/20th of LD50) of fipronil alone (F20) or in combination with LPS (FL20) group. (ZIP 12216 kb)
DOI: 10.6084/m9.figshare.7729676.v1
title: Additional file 1: of Imprint of parity and age at first pregnancy on the genomic landscape of subsequent breast cancer

description: Table S1. Systematic multivariate analysis of mutational load comparing nulliparous vs. parous, early parous vs. late parous and PABC vs. nulliparous patients. Table S2. Systematic multivariate analysis of breast cancer driver SNVs comparing nulliparous vs. parous, early parous vs. late parous and PABC vs. nulliparous patients. Table S3. Systematic multivariate analysis of breast cancer driver SCNAs comparing nulliparous vs. parous, early parous vs. late parous and PABC vs. nulliparous patients. Table S4. Clinicopathological features of nulliparous and parous patients included in the RNAseq analysis. Table S5. Differential expression analysis between nulliparous and parous patients using DEseq2 on raw counts data and controlling for age at diagnosis, pathological stage, molecular subtypes by IHC, histological subtypes. Table S6. Pathway analysis using the generally applicable gene-set enrichment (GAGE) method to identify significantly enriched pathways between nulliparous and parous patients. Table S7. Differential expression analysis between early and late parous patients using DEseq2 on raw counts data and controlling for age at diagnosis, pathological stage, molecular subtypes by IHC, histological subtypes. Table S8. Pathway analysis using the generally applicable gene-set enrichment (GAGE) method to identify significantly enriched pathways between early and late parous patients. Table S9. Systematic multivariate analysis of TILs levels comparing nulliparous vs. parous, early parous vs. late parous and PABC vs. nulliparous patients. Table S10. Clinicopathological features of nulliparous and PABC patients. Table S11. Pathway analysis using the generally applicable gene-set enrichment (GAGE) method to identify significantly enriched pathways between nulliparous and PABC patients. (XLSX 366 kb)
DOI: 10.7284/134654
title: SSV (Sound Speed Velocimeter) data collected during research cruise AR31-A using a AML SmartX P1S2 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7729667.v1
title: Additional file 1: of Transcriptome analysis reveals the role of the PCP pathway in fipronil and endotoxin-induced lung damage

description: Figure S1. Heat map analysis of the commonly expressed gene in LPS (CL), high dose (1/10th of LD50) of fipronil alone (F10) or in combination with LPS (FL10) and a low dose (1/20th of LD50) of fipronil alone (F20) or in combination with LPS (FL20) group. Figure S2-S4. PCP pathway generated by IPA in LPS (CL), high dose (1/10th of LD50) of fipronil alone (F10) or in combination with LPS (FL10) and a low dose (1/20th of LD50) of fipronil alone (F20) or in combination with LPS (FL20) group. (ZIP 12216 kb)
DOI: 10.6084/m9.figshare.7729661
title: Additional file 2: of Rare gut microbiota associated with breeding success, hormone metabolites and ovarian cycle phase in the critically endangered eastern black rhino

description: R Markdown containing all analysisÂ code.Â (RMD 21 kb)
DOI: 10.6084/m9.figshare.7729661.v1
title: Additional file 2: of Rare gut microbiota associated with breeding success, hormone metabolites and ovarian cycle phase in the critically endangered eastern black rhino

description: R Markdown containing all analysisÂ code.Â (RMD 21 kb)