cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/kbfsz83g9b.1
title: Pneumothorax due to COVID-19

description: Coronavirus disease 2019 (COVID-19) patients with these complications are described to determine the time to onset, associated comorbidities, and location and duration of pneumothorax. A search in PubMed yielded simple frequencies and a bivariate analysis of deaths. There were 113 confirmed cases in 67 articles. Articles were selected with a description of the case or cases with pneumothorax and COVID-19; if it was an article with a description of several cases and without the individual description of each case, they were excluded. In the MS Excel spreadsheet, variables were created on clinical data, pre-existing diseases, date of admission and discharge from the hospital / days between events (as described), anatomic location of the pneumothorax. The median time from the date of hospital admission to the presence of pneumothorax was 8 days. Right hemithorax was the most frequent form of pneumothorax. Almost half of the patients required intubation for invasive mechanical ventilation. Although the frequency of this phenomenon was not high among hospitalized patients with confirmed SARS-CoV-2, it was high among those who developed acute respiratory distress syndrome (ARDS). This study contributes to the literature because it presents a large number of patients who developed pneumothorax after admission, which was characterized by clinical deterioration (dyspnea, tachypnea, pleuritic chest pain, and subcutaneous emphysema) and low oxygen saturation levels. Pneumothorax/pneumomediastinum is recommended as a differential diagnosis, even without considering the presence of chronic pulmonary comorbidities or invasive mechanical ventilation.
DOI: 10.17632/d25nwpg3nd.1
title: Enhancing gene regulatory networks inference through hub-based data integration

description: One of the main research topics in computational biology is Gene Regulatory Network (GRN) reconstruction that refers to inferring the relationships between genes involved in regulating cell conditions in response to internal or external stimuli. To this end, most computational methods use only transcriptional gene expression data to reconstruct gene regulatory network, but recent studies suggest that gene expression data must be integrated with other types of data to obtain more accurate models predicting real relationships between genes. In this study, a diffusion-based method is enhanced to integrate biological data of network types besides structural prior knowledge. The Random Walk with Restart algorithm (RWR) with an emphasis on hub nodes is executed separately on each network, and then jointly optimizes low-dimensional feature vectors for network nodes by diffusion component analysis. Next, these feature vectors are used to infer gene regulatory networks. Fourteen centrality measures are studied for the detection of hub nodes to be used in the RWR algorithm, and the best centrality measure having the greatest effect on the improvement of gene network inference is selected. A case study for the Saccharomyces cerevisiae and E. coli networks shows that using the proposed features in comparison with gene expression data alone results in 0.02 to 0.08 units improvement in Area Under Receiver Characteristic Operator (AUROC) criteria across different gene regulatory network inference methods. Furthermore, the proposed method was applied to the esophageal cancer data to infer its gene regulatory network. The proposed framework substantially improves accuracy and scalability of GRN inference. The fused features and the best centrality measure detected can be used to provide functional insights about genes or proteins in various biological applications. Moreover, it can be served as a general framework for network data and structural data integration and analysis problems in various scientific disciplines including biology.
DOI: 10.17632/k47zjr5w9z.1
title: Matrices of state-space model

description: State-space model used in the paper, "Critical Values of Cyber Parameters in a Dynamic Microgrid System"
DOI: 10.17632/3b23kphksj.1
title: STDC.1

description: 1) The main hypothesis indicates that tourism destination competitiveness exerts a mediating effect between community social capital and social prosperity perception, at indigenous Mexican communities. The sample was made up of 11 indigenous communities with touristic activities, associated with the Indigenous Tourism Network of Mexico (RITA). To collect data we use the non-probabilistic snowball technique and the number of observation units was 113. 2) To obtain data, a survey was developed, theoretical concepts were operationalized and Bourgaduos social distance scale was used. Each latent variable was made up of its underlying dimensions and in turn, these were formed with their respective items. To build the factors of each variable, the factorial analysis was used with the varimax extraction method (SPSS). Reliability was measured by Cronbach's alpha coefficient. The relationship between constructs was analysed with the Partial Least Squares Structural Equation Modeling (PLS-SEM) technique. According to pls theory, we used a reflective model and to run the model, the PLS algorithm was used. The lost values were identified as -0.99 and the algorithm that replaced them is called Case Wise Replacement. The PLS algorithm was used for Weighting Scheme were Path Weighting Scheme; Data Metric, mean 0, Var 1; maximum iterations were 500 as this is consistent with the recommendations made by Hair et al., (2019). 3) The interpretation of the results for the study context indicates that community social capital does not have a direct relationship with the perception of social prosperity, however, the indirect relationship through competitiveness indicates a mediating effect.
DOI: 10.17632/md2353jy24.1
title: What's in an in-group

description: The data corresponds to Fernandez Duque, Mauricio, 2021. What's in an in-group?, unpublished manuscript. Available in: https://scholar.harvard.edu/files/duque/files/whatsinaningroup.pdf
DOI: 10.17632/67kdkd37xr.1
title: LINF_360046400

description: 40S ribosomal protein S27-1 | eS27 Leishmania infantum (strain JPCM5)
DOI: 10.17632/6fvc48n775.1
title: LINF_240026900

description: 40S ribosomal protein S8 | eS8 Leishmania infantum (strain JPCM5)
DOI: 10.17632/hvj76gmj7k.1
title: LINF_240027000

description: 40S ribosomal protein S8 | eS8 Leishmania infantum (strain JPCM5)
DOI: 10.17632/s2mmc2f966.1
title: Synchonous melanomas

description: Supplementary table 1. Patient characteristics comparing single, multiple and synchronous melanomas
DOI: 10.17632/s2346n9mf7.1
title: LINF_180011200

description: Ribosomal protein S27-1 | eS27 Leishmania infantum (strain JPCM5)
DOI: 10.17632/3f7jyczf4r.1
title: LINF_360011600

description: Ribosomal protein S27a Leishmania infantum (strain JPCM5)
DOI: 10.17632/n4jtzn2vnk.1
title: LINF_360015200

description: 40S ribosomal protein S18 | uS13 Leishmania infantum (strain JPCM5)
DOI: 10.17632/27nytdcgmf.1
title: LINF_360015600

description: 40S ribosomal protein S10 | eS10 Leishmania infantum (strain JPCM5)
DOI: 10.17632/g2s3z96s85.1
title: LINF_360036700

description: 40S ribosomal protein S24e | eS24 Leishmania infantum (strain JPCM5)
DOI: 10.17632/nmsfn6t7xf.1
title: LINF_360075300

description: ribosomal protein NSA2 Leishmania infantum (strain JPCM5)
DOI: 10.17632/f73zfdmfg2.1
title: LINF_360036600

description: 40S ribosomal protein S24e | eS24 Leishmania infantum (strain JPCM5)
DOI: 10.17632/fm4x4w7jkt.1
title: LINF_360015100

description: 40S ribosomal protein S18 | uS13 Leishmania infantum (strain JPCM5)
DOI: 10.17632/hbhv5brnxj.1
title: Nader Piel 2021 ImageJ Macros

description: Image J macros used to analyse images in Nader et al. 2021, written by Mathieu Maurin, Institut Curie, Paris, France
DOI: 10.17632/xr6kp8czkp.1
title: LINF_360060700

description: 40S ribosomal protein SA | RSSA1 | uS2 Leishmania infantum (strain JPCM5)
DOI: 10.17632/p7tx395nwc.1
title: LINF_360059600

description: 40S ribosomal protein SA | RSSA1 | uS2 Leishmania infantum (strain JPCM5)
DOI: 10.17632/96y4sc7fg9.1
title: A Prosopographical Study of ÖVP and SPÖ Members of Parliament (1945-2019)

description: Replication Material for: "Half a Century of Little Change within the Austrian Legislative Elite? A Prosopographical Study of ÖVP and SPÖ Members of Parliament (1945-2019) "
DOI: 10.17632/t2xfsrj24j.1
title: LINF_360015700

description: 40S ribosomal protein S10 | eS10 Leishmania infantum (strain JPCM5)
DOI: 10.17632/nr9cyyk265.1
title: Pancreas_sample_images

description: E14.5 embryonic mouse pancreas was sectioned at 6 µm from three embryos: embryo (emb) 2, 4 and 11 from the same litter. Two sections (300 µm apart) from each embryo were immunostained for the proteins Carboxypeptidase 1 (CPA1), p120-catenin (p120ctn) and SRY (sex determining region Y)-box 9 (Sox9). DNA was stained with DAPI. Images were acquired as single z-plane tile scans by confocal microscopy using a Zeiss LSM780 system and stitched with Zen software. Channel1: CPA1, Channel2: p120ctn, Channel3: Sox9, Channel4: DAPI
DOI: 10.17632/2xyyhzts9x.1
title: Eye lens dose in CT examinations

description: In 2007-2010, approximately 660 million X-ray examinations were performed in Europe. Of these studies, 8,7 % were CT scans. However, they accounted for 52 % of diagnostic and interventional healthcare radiation. The lens of the eye is particularly sensitive to ionizing radiation and excessive radiation can cause cataracts. Cataracts are the leading cause of blindness and visual disability worldwide. Radiation-induced cataracts are currently classified as deterministic with threshold-dose of 0.5 Sv, but there is evidence that the cataract risk is also increases by radiation doses lower than that. The purpose of our study was to investigate how well the ALARA principle was followed in the Tampere University Hospital regarding the radiation protection of the lens in the brain CT scans by the use of optimal gantry tilt and scan length. The dataset included 329 adult brain CT scans. The collected data from patients included: age, sex, CTDIvol and gantry tilt angle. The eye lens doses in Class A and Class C were modeled by using CT-Expo v. 2.7 Three different categories were used to classify if the gantry tilt and scan length were optimal. In Class A the scan area is fitted to supraorbitomeatal line. In Class C the scan area is fitted to infraortibomeatal line or below. The Class B is between Class A and C where the scan area is fitted around orbitomeatal line. The lowest image in the CT image stack was used to classify the study. The tilt of the gantry had been used in a large proportion of the CT studies, 84.8%. The optimization to avoid lens irradiation was successful by using gantry tilt and image stack placement in 1.8 % of examinations, and partially successful in 68.5 %. The whole lens was exposed in 29.7 % of examinations. The modeled median (min-max) lens equivalent doses Hlens for the cases where the lenses were completely excluded and included in the exposed area were 4.4 mSv (0.7 mSv - 4.9 mSv) and 25.9 mSv (17.8 mSv - 49.2 mSv) respectively. for the cases where the lenses were completely excluded and included in the exposed area were 4.4 mSv (0.7 mSv - 4.9 mSv) and 25.9 mSv (17.8 mSv - 49.2 mSv) respectively. The data in the file includes: patient age and sex, gantry tilt in degrees, classification (A-C), CTDIvol, lens exposure (mSv) and notes about possible implants or imaging protocols.
DOI: 10.17632/6gs5mwmygm.1
title: BRT

description: Behavioral reasoning theory - Green Product Purchase Intention
DOI: 10.17632/wbygc2z9bj.1
title: data set_kogo

description: Data from the paper "Associations of exercise habits and circulatory dynamics with the body composition of the peripheral lower limbs in healthy community-dwelling older individuals".
DOI: 10.25919/z92j-ys82
title: Life cycle data on individual eggs, larvae, pupae of Helicoverpa spp. from Australia (1986 to 2012)

description: We collected large numbers of Helicoverpa eggs, larvae and pupae in various major crop types in several cotton production regions in eastern Australia over 26 years and reared them to determine parasitoid frequencies. In addition, more limited collections were made on minor crops, exotic weeds and native vegetation (the latter also surveyed in inland Australia).
DOI: 10.17632/hvnzwfvsm7.2
title: Dataset of macrobenthic species, organic matter content and grain-size distribution in surficial seafloor sediments in outer continental shelf, pockmark fields and Capbreton canyon tributaries in the southeastern Bay of Biscay

description: This dataset presents the macrobenthic species abundance and biomass in soft bottom areas located at southeastern Bay of Biscay. Data on organic matter content and grain-size distribution in surficial seafloor sediments is also provided. Samples were obtained with Shipek and Smith-McIntyre type grabs in several surveys carried out between 2010 and 2020, covering a range of depths of 32-2241 m. Abundance and biomass of macronbenthic species are given. This information contributes to the knowledge of the spatial variability in the composition of the soft-bottom macroinfauna in a transitional zone from the continental shelf to the tributaries of the Capbreton submarine canyon.
DOI: 10.17632/vpm6gdt4np.1
title: Raw EMG data collected from biceps femoris muscle of rats

description: The source of this dataset is the research article “Quantifying muscle alterations in a Parkinson's disease animal model using electromyographic biomarkers”. This study evaluated the effect of a neurotoxic lesion model on muscle function of freely moving rats. Electromyographic recordings were obtained from control and hemiparkinsonian rats walking in a circular treadmill. Details about the experimental protocol and data adquisition can be obtained from the article related.
DOI: 10.17632/hkw7rf9nxm.1
title: Comparative study of Conocarpus erectus and Phoenix dactylifera as plant biomonitors of particulate matter pollution in Kuwait over three residential areas

description: This study evaluated two widely distributed ornamental species, buttonwood and palm for their effectiveness as biomagnetic monitors over three different land use classes (urban, suburban and industrial land classes).Three experimental sites were classed based on functionalities, population numbers and vicinity to emission sources (Al-Mansouriya ‘urban’ residential area, Al-Shuwaikh Residential area ‘industrial' and Al-Rumaithya ‘suburban’ residential area. Date palm and buttonwood were selected as they are easily identifiable and widely distributed throughout Kuwait’s landscape. Sampling was conducted in September 2017 and continued for a month. At each selected study site, 100 samples of both species were randomly selected and collected. Sampling height was not specified for this experimental set up, as it was not the main goal of this research. Each sample consists of five leaves from the same randomly chosen tree. Leaves were selected on: size similarity, visual absence of abnormalities or signs of nutritional deficiencies, using a 3m telescopic pruning lopper. Leaves were selected at an azimuth angle of 70 degrees. Plants, coordinates, height, distance from the nearest road and distance from the closest plant were recorded. A variety of magnetic measurements were applied to the leaf samples to enable the quantification of magnetic concentration within selected sites and also identify grain size variations and magnetic mineralogy. Prior to magnetic analysis Image J software was used to determine total surface area (cm2) to attain NRM, SIRM, HIRM values normalized for leaf area. Samples were then air dried for 5 days, packed in A4 size cling film under went magnetic measurement using a using an AGICO magnetometer. Leaf abaxial and adaxial micro-morphological characteristics were analyzed using scanning electron microscopy (SEM) imaging using an environmental scanning electron microscope (FEG-ESEM) equipped with an energy dispersive X-Ray (EDX) detector. Descriptive statistics (SPSS, (21.0)). The rest of the Statistical analyses were conducted using (R 3.5.1) software. Kolmogorov-Smirnov normality test (K-S) was applied to determine the most suitable statistical test. A General Linear Model (GLM) analysis of variance (ANOVA) was employed to determine the interaction between the two subject factors: tree species and land class use assess main effects and interactions . For multiple comparisons, Bonferroni´s tests were applied. A Multivariable model was used adjust and obtain true effects of variables. An (ANCOVA) model was applied to determine significant difference between variables and assess their effects on parameters. Additionally, the effects of species and land class as well as interactions terms were adjusted and corrected. One-way Anova models assessed homogeneity of the land classes and species. Spatial variation of magnetic parameters was determind by Inverse Distance Weighted technique (IDW) using ArcGIS.
DOI: 10.17632/7m2b7pbtck.1
title: Decision making in military leaders with ADHD

description: Decision making intervention strategies in military leaders with ADHD
DOI: 10.17632/y7vbjgczn5.1
title: GFDL_flux2

description: CM2.1 1000 years control run
DOI: 10.17632/zn97nzffmm.1
title: Steady State 2D Regularized Lid-Driven Cavity Low-resolution Spatiotemporal Snapshots - Part 2

description: This data was generated using the pseudo-spectral DNS method outlined in Lee, Dowell, and Balajewicz CNSNS (2017). Filenames denote Reynolds number. Each file contains a velocity snapshot matrix where each column is sampled at a different timestep. Original simulations had a factor of 100 higher temporal resolution than do these matrices; the snapshots provided here were spaced 0.1 nondimensional time units apart. Each column comprises both horizontal and vertical velocity data with the former stacked atop the latter. A provided convertCavitySnapshot.m function converts a single cavity snapshot into non-stacked organization. cheb.m builds the x-vector (y is identical) and differentiation matrix D where dx(square_snapshot) = matmul(-square_snapshot,D.transpose) and dy(square_snapshot) = matmul(D,square_snapshot). plotSnapshot.m likewise plots a snapshot for user viewing. All data in this repository is discretized as 130 points in both the x and the y directions, viz. the 'res' variable passed to convertCavitySnapshot.m would be 130.
DOI: 10.17632/64jsbg5n9s.1
title: Supplementary_Material_JDS20510

description: Supplementary material of Genome-wide association studies (GWAS) and post-GWAS analyses for technological traits in Assaf and Churra dairy breeds. doi: 10.3168/jds.2021-20510.
DOI: 10.17632/4vr86gr5ch.1
title: Two-Pore-Domain Potassium Channel Agonist to Efficiently Treat Migraine

description: Dataset for the pubilcation "Two-Pore-Domain Potassium Channel Agonist to Efficiently Treat Migraine" the excel files contains all the data obtained for the 4 figures of the publications: -the bahavior in mice -the electrophysiology of primary neuronal culture -Behavior in rats
DOI: 10.17632/bymzy9xmbc.1
title: Historical average car emissions by fuel types by Lower Super Output Areas (LSOA) from 2001 to 2018 in Great Britain

description: The data contains a long-form summary of the number of cars, average age, and average CO2 emissions per km for each year broken down by year, fuel type, and Lower Super Output Area (LSOA). The data covers the years 2001 to 2018 and all LSOAs in England and Wales and Data Zones in Scotland. Columns year - integer (2001 - 2018) LSOA - 2011 LSOA Code (England and Wales) or 2011 Data Zone Code (Scotland) or zBetween Keepers or zUnknown or M99999999 (Isle of Mann) fuel - fuel type (DIESEL, PETROL, HYBRID ELECTRIC, OTHER, ELECTRIC DIESEL) AllCars - integer, count of the number of cars (values less than 4 repalced with NA) AvgCO2 - average grammes of CO2 emissions per km AveAge - average age in years
DOI: 10.17632/3c3hpk44w6.1
title: LINF_160020400

description: paraflagellar rod protein 1D | PFR2 Leishmania infantum (strain JPCM5)
DOI: 10.17632/xnd5cc8cts.1
title: LINF_160020900

description: protein of unknown function - conserved Leishmania infantum (strain JPCM5)
DOI: 10.17632/ts65kcv3x2.1
title: LINF_160020200

description: paraflagellar rod protein 1D | PFR2 Leishmania infantum (strain JPCM5)
DOI: 10.17632/btxmysf9ht.1
title: LINF_160020300

description: paraflagellar rod protein 1D | PFR2 Leishmania infantum (strain JPCM5)
DOI: 10.17632/wjsv99cw67.2
title: High Permeance or High Selectivity? Optimization of System-scale Nanofiltration Performance Constrained by the Upper Bound

description: Upper bound data for nanofiltration membranes in Figure 1
DOI: 10.17632/hhdb37cp9f.1
title: LINF_360018300

description: 40S ribosomal protein S9 | uS4 Leishmania infantum (strain JPCM5)
DOI: 10.17632/c4dtz8nwvw.1
title: Effect of Gammulin supplementation during the first 24 d of life on health, growth, and first lactation performance of Holstein cows (Supplementary Figures)

description: In this experiment we evaluated the effect of adding a dietary supplement (Gammulin) to the liquid feed of calves from 1 to 24 d of age on pre-weaning growth and health and first lactation performance. Although during the supplementation period calves fed Gammulin had fewer days with profuse diarrhea, these calves had lower starter intake from 25 to 60 d of age and body weight at 60 d of age. The supplementation with Gammulin did not affect first lactation performance.
DOI: 10.17632/4mcb999nch.1
title: Multi-scale study of the architecture, topography and mechanics of the human ovary from prepuberty to menopause: a blueprint for next-generation bioengineering and diagnosis

description: This dataset contains raw AFM data that will be published with the article: "Multi-scale study of the architecture, topography, and mechanics of the human ovary from prepuberty to menopause: a blueprint for next-generation bioengineering and diagnosis", currently in the review in Nature Communication. It contains five folders corresponding to five independent experimental days. Each folder contains the raw, untreated AFM data ('.OUT', file extension) used to calculate the viscoelastic response and foles with the extension '.jpk_force-map' to obtain an elastic response. All the data was acquired on a JPK AFM microscope. Each file-name starts with either repro (reproductive stage), meno (menopausal stage), or prepub (prepuberty stage) tag, which corresponds to three age groups that were the subject of this study. The numbers correspond to a given patient (e.g., repro1 is a randomized name of a patient 1 from the reproductive age group). Files containing the same name tag, e.g., repro1, correspond to different zones (zone 1, 2, 3...) on the same tissue cut or the different cuts (lamela1, lamela2). The Matlab scripts used to analyze the raw data to obtain viscoelastic constants can be accessed here: https://github.com/inatamara/AFManalysisMatlab