cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/qh2dl9
title: Mamíferos (Synapsida, Theria) del Valle del Cauca, Colombia

description: Se presenta una lista de los mamíferos (Synapsida: Theria), del departamento del Valle del Cauca y un recuento histórico de las expediciones y colecciones realizadas en el departamento. Este trabajo sólo incluye especies que están representadas en museos por especímenes de referencia, con excepción de algunos mamíferos marinos. Se registran para el Valle del Cauca un total de 212 especies agrupadas en 13 órdenes, 42 familias y 135 géneros. Igual que ocurre a nivel nacional los murciélagos son el orden más diverso (98 especies), seguido de los roedores (47 especies). Cuarenta y tres especies se encuentran en alguna categoría de amenaza tanto de la UICN como de la CVC, de las cuales 14 están incluidas dentro de las máximas categorías (S1, CR, EN, VU) y recomendamos realizar esfuerzos urgentes para promover su conservación. Por último, con base en la distribución de las localidades de colecta, se analiza la distribución geográfica en las vertientes cordilleranas y las planicies del departamento. Un total de 64 especies tienen una distribución que incluye la totalidad del departamento (CC, COVOC, COVOR, VG, PAC), al tiempo que 56 especies están restringidas a una sola unidad.
DOI: 10.15468/lno6sg
title: Biodiversidad exótica: presencia de especies marinas no-nativas introducidas por el tráfico marítimo en puertos colombianos

description: Debido a su ubicación geográfica favorable entre el Mar Caribe y el océano Pacifico y la alta actividad portuaria (casi 30.000 arribos por año), Colombia tiene elevada susceptibilidad a la introducción de especies marinas no-nativas mediadas por el tráfico marítimo. A la luz de esta amenaza potencial, en marzo y octubre de 2010 se realizaron levantamientos biológicos de línea base en tres zonas portuarias mayores del Caribe colombiano (Cartagena, Santa Marta y Coveñas) y en tres cuerpos de aguas de referencia adyacentes (Bahía de Barbacoas, cerca de Barú, ensenada de Gaira, cerca del Rodadero y Ciénaga de Cispatá), con el fin de detectar especies no-nativas, potencialmente introducidas por las embarcaciones. En cada una de las localidades se colectaron muestras de fitoplancton y zooplancton superficial mediante arrastres horizontales. En Coveñas se analizó también el plancton de muestras de agua de lastre de dos tanqueros. La comunidad bentónica epifaunal fue analizada por raspados de sustratos duros entre los 0 y 3 m de profundidad. A la fecha, se han identificado 39 especies sin registros anteriores para el Caribe colombiano que probablemente son introducidas. De éstas, 34 son fitoplancton (de cuales dos fueron observadas solamente en aguas de lastre), tres son copépodos y dos corresponden a macroinvertebrados bentónicos. El número de taxa sin registros anteriores fue mayor para los tres sectores portuarios que para las zonas de referencia, con el mayor número de especies nuevas (17) para Santa Marta.
DOI: 10.15468/51i326
title: Mamíferos (Mammalia: Theria) del departamento del Cauca, Colombia

description: El departamento del Cauca, ubicado en el suroccidente de Colombia, es quizás uno de los departamentos con mayor riqueza de mamíferos, debido a su variedad de ecosistemas y amplio gradiente altitudinal. Con el fin de unificar la información de los mamíferos presentes en el departamento, presentamos una lista de 220 especies que ocupan el área continental y marina, generada a partir de la revisión de colecciones de referencia nacionales, bases de datos de colecciones internacionales e información bibliográfica. El número de especies registradas (220), representa aproximadamente el 45% del total de mamíferos registrados y de presencia probable en Colombia. Pese a esta alta riqueza, esta unidad politico-administrativa es una de las menos estudiadas en cuanto a mamíferos, por lo que es necesaria la realización de nuevas investigaciones que contribuyan a un mejor conocimiento de este grupo zoológico y que provean herramientas para la conservación del mismo en el departamento.
DOI: 10.15468/bpmcmb
title: Los bosques secos del Valle del Cauca, Colombia: una aproximación a su flora actual

description: A partir de las colecciones de plantas y registros personales realizados por el autor en los bosques secos del Valle del Cauca, Colombia, entre 1992 y 2012, se presenta un análisis de la situación actual de la flora y los bosques secos en el Valle del Cauca. Luego de revisar cerca de 12.000 registros de herbario de plantas de los bosques secos del Valle y haber explorado las áreas clave, la composición actual consiste en aproximadamente 1.300 especies de plantas vasculares, de las cuales 255 corresponden a árboles. Los árboles y las epifitas son los grupos más afectados por la deforestación, sobre los cuales es posible llegar a entender mejor la manera en que han sido impactados los ecosistemas naturales en el departamento. Es sobre ellos además, que se pueden enfocar más efectivamente acciones de conservación que generan un impacto positivo. Se presenta además un listado de 936 especies de plantas de los boques secos, el más extenso presentado hasta ahora, que contiene información sobre hábito, distribución, abundancia, amenaza, hábitats y tipo de dispersión. Con este trabajo se busca contribuir al conocimiento y al diseño de estrategias que permitan la conservación y la restauración de estos ecosistemas.
DOI: 10.18116/c6159z
title: CANDI Share Schizophrenia Bulletin 2008 data

description: Data for CANDI Share Schizophrenia Bulletin 2008 (reference below) as part of the CANDI Neuroimaging Access Point. This set includes preprocessed MRI images and segmentation results of all 4 diagnostic groups (Healthy Controls, N=29; Schizophrenia Spectrum, N=20; Bipolar Disorder with Psychosis, N=19; and Bipolar Disorder without Psychosis, N=35). Frazier JA, Hodge SM, Breeze JL, Giuliano AJ, Terry JE, Moore CM, Kennedy DN, Lopez-Larson MP, Caviness VS, Seidman LJ, Zablotsky B, Makris N. Diagnostic and sex effects on limbic volumes in early-onset bipolar disorder and schizophrenia. Schizophr Bull. 2008 Jan;34(1):37-46.
DOI: 10.18116/c6wc71
title: Internet Brain Segmentation Repository (IBSR) 1.5mm dataset

description: The Internet Brain Segmentation Repository (IBSR) provides manually-guided expert segmentation results along with magnetic resonance brain image data. Its purpose is to encourage the evaluation and development of segmentation methods. This data set includes 1.5mm data. Eighteen subjects aged 7-71 are currently available. For each subject there is: 1) T1-weighted volumetric images that have been 'positionally normalized' into the Talairach orientation (rotation only). Also note that these data have been processed by the CMA 'autoseg' biasfield correction routines; 2) Segmentation results for 'general segmentation' of 43 individually labeled principal gray and white matter structures of the brain.
DOI: 10.25345/c5cr0h
title: MassIVE MSV000085834 - Andres_Brunetti_Copho_27jul2020_QTOF
title: This is a data set from the skin secretion of several anuran species mainly from the family Hylidae, but also from Alsodidae, collected in Brazil, Argentina, and Colombia. Skin secretion was obtained after applying surface electrical stimulation (SES) to the dorsal skin, washing with ultrapure water, frozen, and lyophilized. Specimens were collected with licenses and permission from each country, and the procedures were approved by the ethical committee from the Faculty of Pharmaceutical Sciences, USP, Ribeirao Preto.
DOI: 10.5281/zenodo.34689
title: Code In Ecology Journals

description: This analysis assesses the way ecology journals handle code and software written for scientific research. The results of the analysis were used to create Figure 1 in Mislan et al. (2016).

Please cite the following paper if you use this data/code:

Mislan, K. A. S., J. M. Heer, and E.P. White. (2016) Elevating the status of code in ecology. Trends in Ecology and Evolution. http://dx.doi.org/10.1016/j.tree.2015.11.006
description: Acknowledgements: K.A.S. was supported by the Washington Research Foundation Fund for Innovation in Data-Intensive Discovery and the Moore/Sloan Data Science Environments Project at the University of Washington. This work was partially supported by the Gordon and Betty Moore Foundation's Data-Driven Discovery Initiative through grant GBMF4553 to J.M.H. and grant GBMF4563 to E.P.W.
DOI: 10.15128/44558d350
title: Supporting Data for:  "Superballistic center-of-mass motion in one-dimensional attractive Bose gases"

description: For full details about data refer to description.txt included with the tar.gz file along with the data. The tar.gz file also contains Gnuplot source code used to generate papers figures.
description: Supporting data for the publication http://arxiv.org/abs/1510.05204, "Superballistic center-of-mass motion in one-dimensional attractive Bose gases: Decoherence-induced Gaussian random walks in velocity space". Authors: Christoph Weiss, Simon L. Cornish, Simon A. Gardiner and Heinz-Peter Breuer.
DOI: 10.5287/bodleian:py6d0x4ez
title: Data acquired during the development of an R2′ mapping technique with prospective correction for macroscopic magnetic field gradients
DOI: 10.5281/zenodo.3960617
title: Smillie2019 SCP259 colon epithelium and lamina propria ulcerative colitis dataset for Besca

description: The gene expression matrix and metadata were downloaded the Single Cell Portal of the Broad Institute (https://singlecell.broadinstitute.org/single_cell/study/SCP259/intra-and-inter-cellular-rewiring-of-the-human-colon-during-ulcerative-colitis), originally published by Smillie CS, Biton M, Ordovas-Montanes J, et al. Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis. <em>Cell</em>. 2019;178(3):714-730.e22. doi:10.1016/j.cell.2019.06.029. We reprocessed the dataset using the Besca package (https://github.com/bedapub/besca).
description: {"references": ["Smillie CS, Biton M, Ordovas-Montanes J, et al. Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis. Cell. 2019;178(3):714-730.e22. doi:10.1016/j.cell.2019.06.029"]}
DOI: 10.5281/zenodo.3960616
title: Smillie2019 SCP259 colon epithelium and lamina propria ulcerative colitis dataset for Besca

description: The gene expression matrix and metadata were downloaded the Single Cell Portal of the Broad Institute (https://singlecell.broadinstitute.org/single_cell/study/SCP259/intra-and-inter-cellular-rewiring-of-the-human-colon-during-ulcerative-colitis), originally published by Smillie CS, Biton M, Ordovas-Montanes J, et al. Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis. <em>Cell</em>. 2019;178(3):714-730.e22. doi:10.1016/j.cell.2019.06.029. We reprocessed the dataset using the Besca package (https://github.com/bedapub/besca).
description: {"references": ["Smillie CS, Biton M, Ordovas-Montanes J, et al. Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis. Cell. 2019;178(3):714-730.e22. doi:10.1016/j.cell.2019.06.029"]}
DOI: 10.6084/m9.figshare.2007738
title: Aneks 3
DOI: 10.15128/jd472w44j
title: Real-time traversable surface detection by colour space fusion and temporal analysis - Evaluation Dataset

description: Data set from research paper: Real-Time Traversable Surface Detection by Colour Space Fusion and Temporal Analysis (I. Katramados, S. Crumpler, T.P. Breckon), In Proc. International Conference on Computer Vision Systems, Springer, Volume 5815, pp. 265-274, 2009. Previously released (2009-2015) as zip file download from personal web page of the authors (Katramados / Breckon).
description: We present a real-time approach for traversable surface detection using a low-cost monocular camera mounted on an autonomous vehicle. The proposed methodology extracts colour and texture information from various channels of the HSL, YCbCr and L*A*B colour-spaces by temporal analysis in order to create a “traversability map”. On this map lighting and water artefacts are eliminated including shadows, reflections and water prints. Additionally, camera vibration is compensated by temporal filtering leading to robust path edge detection in blurry images. The performance of this approach is extensively evaluated over varying terrain and environmental conditions and the effect of colour-space fusion on the system’s precision is analysed. The results show a mean accuracy of 97% over this comprehensive test set.
description: Computer vision and image processing applied to robotic vision and autonomous vehicle guidance.
DOI: 10.5281/zenodo.35012
title: Privacy Dataset

description: Input for privacy tool
DOI: 10.5061/dryad.t39q6/4
title: Bobwhite Mitogenome Alignment - SUPERSEDED - DELETE AT CURATION

description: Bobwhite mitogenome alignment (nexus file)
DOI: 10.17632/ddy82wg2fw.1
title: The more the merrier – experimental evidence for density-dependent feeding facilitation in the bird-specialised tick Ixodes arboricola

description: Experimental data for manuscript titled "The more the merrier – experimental evidence for density-dependent feeding facilitation in the bird-specialised tick Ixodes arboricola", published in International Journal of Parasitology. Experimental infestations of great tit (Parus major) nestlings with 1-5 adult tree-hole ticks (Ixodes arboricola). Data concern number of ticks placed on nestlings, tick attachment success after 1 h and 48 h, tick recovery rates, tick engorgement weight and tick scutum length, and nestling weight, tarsus length and developmental age at infestation and 48 h later. Additional factors include year, area and nest, and dates and times of infestation (time1) and inspection of nestlings (time2).
DOI: 10.5281/zenodo.23029
title: Dataset For Boersma And Pyenson 2015 Plosone

description: This .zip file contains 3D datasets for the type specimen of <em>Ontocetus emmonsi</em>, a fossil pinniped, cataloged as USNM 329064 and the type specimen of <em>Albicetus oxymycterus</em>, a fossil sperm whale, cataloged as USNM 10923. Both specimens are deposited in the Department of Paleobiology at the Smithsonian Institution's National Museum of Natural History in Washington, D.C. See Boersma and Pyenson (2015) <em>PLOS ONE</em> for details about the files and original data collection methods. Data are also available for visualization and download at Smithsonian X 3D (http://3d.si.edu).
DOI: 10.5281/zenodo.35074
title: Popc_Amber_Lipid14_Cacl2_1Mol

description: MD simulation trajectory and related files for fully hydrated POPC bilayer with 1M CaCl2. The LIPID14 force field was used with Gromacs 5.0.3. Ions were described by AMBER99SB-ILDN force field. Conditions: T=298.15, 128 POPC molecules, 6400 tip3p waters (lipid/water 1:50), 100 Ca, 200 Cl. 200ns trajectory  (preceded by 5ns NPT equillibration) (2 files of 100ns).
DOI: 10.5281/zenodo.35156
title: Popc_Charmm36_Cacl2_1Mol

description: The starting structure was constructed using the CHARMM-GUI Membrane Builder (http://www.charmm-gui.org/) online tool.

All runs were performed with Gromacs 5.0.4 software package and CHARMM36 additive force field parameters obtained from CHARMM-GUI input files [1]. Conditions: T=303, 128 POPC molecules, 6400 tip3p waters (lipid/water 1:50), 100 Ca, 200 Cl. 200ns trajectory (preceded by standard CHARMM-GUI NPT equilibration) (2 files of 100ns).

This data is ran for the nmrlipids.blospot.fi project. More details from nmrlipids.blospot.fi and https://github.com/NMRLipids/nmrlipids.blogspot.fi

[1] CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field,  J. Lee et al.<strong>,</strong> JCTC,<strong> </strong>DOI: 10.1021/acs.jctc.5b00935
DOI: 10.15468/dl.igbahg
title: GBIF Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query: TaxonKey: Rubus japonicus L. 
HasCoordinate: true 
HasGeospatialIssue: false. The dataset includes 0 records from 0 constituent datasets:
DOI: 10.6084/m9.figshare.2007528.v1
title: Infographie_openaccess.pdf
DOI: 10.5281/zenodo.35159
title: Popc_Charmm36_Cacl2_035Mol

description: The starting structure was constructed using the CHARMM-GUI Membrane Builder (http://www.charmm-gui.org/) online tool.

All runs were performed with Gromacs 5.0.4 software package and CHARMM36 additive force field parameters obtained from CHARMM-GUI input files [1]. Conditions: T=303, 128 POPC molecules, 6400 tip3p waters (lipid/water 1:50), 35 Ca, 70 Cl. 200ns trajectory (preceded by standard CHARMM-GUI NPT equilibration) (2 files of 100ns).

This data is ran for the nmrlipids.blospot.fi project. More details from nmrlipids.blospot.fi and https://github.com/NMRLipids/nmrlipids.blogspot.fi

[1] CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field,  J. Lee et al.<strong>,</strong> JCTC,<strong> </strong>DOI: 10.1021/acs.jctc.5b00935
DOI: 10.5281/zenodo.35160
title: Popc_Charmm36_Cacl2_067Mol

description: The starting structure was constructed using the CHARMM-GUI Membrane Builder (http://www.charmm-gui.org/) online tool.

All runs were performed with Gromacs 5.0.4 software package and CHARMM36 additive force field parameters obtained from CHARMM-GUI input files [1]. Conditions: T=303, 128 POPC molecules, 6400 tip3p waters (lipid/water 1:50), 67 Ca, 134 Cl. 200ns trajectory (preceded by standard CHARMM-GUI NPT equilibration) (2 files of 100ns).

This data is ran for the nmrlipids.blospot.fi project. More details from nmrlipids.blospot.fi and https://github.com/NMRLipids/nmrlipids.blogspot.fi

[1] CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field,  J. Lee et al.<strong>,</strong> JCTC,<strong> </strong>DOI: 10.1021/acs.jctc.5b00935
DOI: 10.5281/zenodo.29193
title: A Dataset Of 3D Fly (Drosophila Melanogaster) Flight Trajectories To Study The Role Of Neuropeptide Degradation In Visuo-Motor Behaviors.

description: As part of a wide study on the role of neuropeptides in the visuo-motor behavior of Drosophila melanogaster, we exposed three fly strains with impaired neuropeptide degradation function, and corresponding controls, to different visual stimuli.

Find further details in the provided README.
DOI: 10.5880/sfb806.14
title: LGM major inland waters of Europe - GIS dataset

description: This is GIS dataset contains the major inland waters (rivers and lakes) of Europe during the LGM. The data was collected from data published in scholarly works.
DOI: 10.5061/dryad.tp4v3/1
title: Neutral_Microsatellites_dunnocks

description: Scores for 16 neutral microsatellites of the UK and NZ population of dunnocks (Prunella modularis).
DOI: 10.5061/dryad.tp4v3/10
title: SERT_592_aligned

description: Fasta file containing aligned sequences of a 505 bp fragment of the SERT promoter.
DOI: 10.5061/dryad.tp4v3/2
title: SERT_Microsatellites_dunnocks

description: Scores for two SERT microsatellites (SERTex1 and SERTIND110) of the UK and NZ population of dunnocks (Prunella modularis).
DOI: 10.5061/dryad.tp4v3/3
title: DRD4_SNPs_Indels_dunnocks

description: The file lists single-nucleotide polymorphisms (SNPs) and indels in the DRD4 gene of the UK and NZ population of dunnocks (Prunella modularis).
DOI: 10.5061/dryad.tp4v3/4
title: SERT_SNPs_Indels_dunnocks

description: The file lists single-nucleotide polymorphisms (SNPs) and indels in the SERT gene of the UK and NZ population of dunnocks (Prunella modularis).
DOI: 10.5061/dryad.tp4v3/5
title: FID_data_NZ_dunnocks

description: The file lists flight-initiation distances (FID), sex, year and season of the New Zealand population of dunnocks (Prunella modularis).
DOI: 10.5061/dryad.tp4v3/6
title: MatingStatus_NZ_dunnocks

description: The file lists mating statuses, sex and year of the New Zealand population of dunnocks (Prunella modularis).
DOI: 10.5061/dryad.tp4v3/7
title: DRD4_In1_aligned

description: Fasta file containing aligned sequences of a 670 bp fragment of DRD4 intron 1.
DOI: 10.5061/dryad.tp4v3/8
title: DRD4_Ex3_aligned

description: Fasta file containing aligned sequences of a 574 bp fragment of DRD4 spanning the 5’ flanking region of intron 2 and the complete exon 3.
DOI: 10.5061/dryad.tp4v3/11
title: SERT_S2_aligned

description: Fasta file containing aligned sequences of a 775 bp fragment of SERT spanning intron 3, exon 4 and a part of the 5’-end of intron 4.
DOI: 10.5061/dryad.tp4v3/12
title: SERT_S4_aligned

description: Fasta file containing aligned sequences of a 413 bp fragment of the 3’-end of the SERT intron 5.
DOI: 10.5061/dryad.tp4v3/13
title: SERT_S5_aligned

description: Fasta file containing aligned sequences of a 364 bp fragment of SERT spanning the complete intron 7 anda part of exon 8.
DOI: 10.5061/dryad.tp4v3/9
title: SERT_392_aligned

description: Fasta file containing aligned sequences of a 208 bp fragment of the SERT promoter.
DOI: 10.5281/zenodo.35173
title: Alpha Bantu Tone-1

description: This is a bibliographic data listing the primary descriptive sources for the study of tone in Bantu languages. This is the first version of the alpha release of the database. The DOI for version 1 of the database is <strong>http://dx.doi.org/10.5281/zenodo.35173</strong> and the DOI for the most recent version (2) is <strong>http://dx.doi.org/10.5281/zenodo.35175.</strong>
description: This is not the actual public version: that is forthcoming in a week.
DOI: 10.15468/ubvzxq
title: UCDavis - Western USA - Monarch Butterflies - 1892-2005

description: Monarch (Danaus plexippus) species occurrence data collated for western North America from museum and private databases and specimen labels. The data sources included collections from the Nevada State Museum (George Austin), Brigham Young University, the California Academy of Sciences, the Los Angeles County Museum of Natural History, the Bohart Museum (University of California, Davis), the University of Utah and Utah State University. Additional data sources were collections and observations from John Hinchliff ’s Oregon Butterfly Atlas (via Oregon State University), Andrew Brower, Robert Pyle, Arthur Shapiro and Larry Speers.
DOI: 10.5281/zenodo.35175
title: Alpha Bantu Tone-2

description: This is a bibliographic data listing the primary descriptive sources for the study of tone in Bantu languages. This is the first version of the alpha release of the database. The DOI for version 1 of the database is <strong>http://dx.doi.org/10.5281/zenodo.35173</strong> and the DOI for the most recent version (2) is <strong>http://dx.doi.org/10.5281/zenodo.35175</strong>
DOI: 10.15468/0d0iss
title: Grylloblattodea Species File

description: This file contains taxon names and related nomenclatural information for the Grylloblattodea originating from the Grylloblattodea Species File maintained by the Species File Group (http://software.speciesfile.org) at the University of Illinois, Illinois Natural History Survey.
DOI: 10.15468/aizhud
title: Zoraptera Species File

description: This file contains taxon names and related nomenclatural information for the Zoraptera originating from the Zoraptera Species File maintained by the Species File Group (http://software.speciesfile.org) at the University of Illinois, Illinois Natural History Survey.
DOI: 10.15468/p3kmr8
title: Chrysididae Species File

description: This file contains taxon names and related nomenclatural information for the Chrysididae originating from the Chrysididae Species File maintained by the Species File Group (http://software.speciesfile.org) at the University of Illinois, Illinois Natural History Survey.
DOI: 10.15468/ygmss5
title: Mantophasmatodea Species File

description: This file contains taxon names and related nomenclatural information for the Mantophasmatodea originating from the Mantophasmatodea Species File maintained by the Species File Group (http://software.speciesfile.org) at the University of Illinois, Illinois Natural History Survey.
DOI: 10.17632/799p96rhbp.1
title: Data for Fig. 2 (PoMLab)

description: data for Fig 2
DOI: 10.4225/03/566a790d8dbe9
title: Australian Football as a Construct of the Frontier Contact Zone (Gerardo Papalia; Robert Pascoe)