cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15151/esrf-es-885625727
title: To determine the changes of average oxidation state and cordination environment of tranisition metal ions in intercalation-based cathode mat

description: The increasing use of Lithium-ion batteries (LIBs) has led and will further lead to the depletion of lithium reserves. In response, investigations are being done on other cations (Na+) and anions (F-, Cl-) as shuttling ions for battery systems. Recently, fluoride ion batteries (FIBs) are considered as an alternative for all-solid-state batteries based on intercalation-based cathode materials. This has not only led to higher cycling stability but also facilitates the lowering of overpotentials. In this respect, different second-generation intercalation materials have been studied, among which La2Ni0.75Co0.25O4 and La1.9Sr0.1Ni0.9Mn0.1Co0.1O4 have been identified for improved cycling performance. Further, X-ray absorption spectroscopy has proven successful to obtain element-specific information. As it also indicates structural changes which give information on the strain-induced locally, the behavior of all transition metal cations in the pristine, charged and discharged state.
DOI: 10.6084/m9.figshare.20445199
title: Table S6. ABC model parameters and priors from The antique genetic plight of the Mediterranean monk seal (<i>Monachus monachus</i>)

description: Details of ABC models parameters and priors. Nb_pop: number of populations, obs_file, ssdef, ref_file: .obs, .ssdef and .arp files used in ABCTOOLBOX, Gen_time: generation time used to draw priors, T0-T1-T2: demographic event time priors, N0-N1-N2: effective population size priors, NM0-NM1: migration rate priors, prior_min-max: log10 scaled prior values, prior_years-diploid-diploi/gen: natural scaled prior values.
DOI: 10.6084/m9.figshare.20445202
title: Table S2. Samples and genotypes information from The antique genetic plight of the Mediterranean monk seal (<i>Monachus monachus</i>)

description: Table presenting the samples used in the study, their metadata and microsatellite genotypes. ID: sample identifier (PG database); Region: sampling region, Simplified_region: larger area than the latter for which regions were grouped together to form larger entities on which population genetics statistics can be estimated; Longitude & Latitude: approximate sample geographic coordinates (in WGS84-degree decimal); Year: sampling year as reported by collectors; Simplified_year: approximated sampling time only modified for non-integer values; Period: categorized period of sampling modern (≧ 1980), historic (&lt; 1980); Country: sampling country; Island locality: more precise name of the sampling locality when available; Age: age of the animal at sampling; Sex: sex of the animal; NS: specimen not sequenced at the mtDNA CR1 locus; #called_alleles: number of called alleles; #uncalled_alleles: number of uncalled alleles; Missing rate: sample based loci missing rate.
DOI: 10.6084/m9.figshare.20445205.v1
title: Table_S10_ABC_model_fit_final_entropy.xlsx from The antique genetic plight of the Mediterranean monk seal (<i>Monachus monachus</i>)

description: Disentangling the impact of Late Quaternary climate change from human activities can have crucial implications on the conservation of endangered species. We investigated the population genetics and demography of the Mediterranean monk seal (<i>Monachus monachus</i>), one of the world's most endangered marine mammals, through an unprecedented dataset encompassing historical (extinct) and extant populations from the eastern North Atlantic to the entire Mediterranean Basin. We show that Cabo Blanco (Western Sahara/Mauritania), Madeira, Western Mediterranean (historical range) and Eastern Mediterranean regions segregate into four populations. This structure is likely the consequence of recent drift, combined with long-term isolation by distance (<i>R</i><sup>2</sup> = 0.7), resulting from prevailing short-distance (less than 500 km) and infrequent long-distance dispersal (less than 1500 km). All populations (Madeira especially), show high levels of inbreeding and low levels of genetic diversity, seemingly declining since historical time, but surprisingly not being impacted by the 1997 massive die-off in Cabo Blanco. Approximate Bayesian Computation analyses support scenarios combining local extinctions and a major effective population size decline in all populations during Antiquity. Our results suggest that the early densification of human populations around the Mediterranean Basin coupled with the development of seafaring techniques were the main drivers of the decline of Mediterranean monk seals.
DOI: 10.6084/m9.figshare.20445205
title: Table_S10_ABC_model_fit_final_entropy.xlsx from The antique genetic plight of the Mediterranean monk seal (<i>Monachus monachus</i>)

description: Disentangling the impact of Late Quaternary climate change from human activities can have crucial implications on the conservation of endangered species. We investigated the population genetics and demography of the Mediterranean monk seal (<i>Monachus monachus</i>), one of the world's most endangered marine mammals, through an unprecedented dataset encompassing historical (extinct) and extant populations from the eastern North Atlantic to the entire Mediterranean Basin. We show that Cabo Blanco (Western Sahara/Mauritania), Madeira, Western Mediterranean (historical range) and Eastern Mediterranean regions segregate into four populations. This structure is likely the consequence of recent drift, combined with long-term isolation by distance (<i>R</i><sup>2</sup> = 0.7), resulting from prevailing short-distance (less than 500 km) and infrequent long-distance dispersal (less than 1500 km). All populations (Madeira especially), show high levels of inbreeding and low levels of genetic diversity, seemingly declining since historical time, but surprisingly not being impacted by the 1997 massive die-off in Cabo Blanco. Approximate Bayesian Computation analyses support scenarios combining local extinctions and a major effective population size decline in all populations during Antiquity. Our results suggest that the early densification of human populations around the Mediterranean Basin coupled with the development of seafaring techniques were the main drivers of the decline of Mediterranean monk seals.
DOI: 10.6084/m9.figshare.20445211
title: Table S9: ABC model fit from The antique genetic plight of the Mediterranean monk seal (<i>Monachus monachus</i>)

description: Table of statistics used to assess the model fit. nr: number of retained simulations, fit assessed using all summary statistics (All stats), reduced N components using a partial least square regression (PLS), using only subset of the statistics (Selected stats) or their PLS regression (PLS on selected stats).
DOI: 10.6084/m9.figshare.20445211.v1
title: Table S9: ABC model fit from The antique genetic plight of the Mediterranean monk seal (<i>Monachus monachus</i>)

description: Table of statistics used to assess the model fit. nr: number of retained simulations, fit assessed using all summary statistics (All stats), reduced N components using a partial least square regression (PLS), using only subset of the statistics (Selected stats) or their PLS regression (PLS on selected stats).
DOI: 10.6084/m9.figshare.20445217.v1
title: Table_S11_ABC_posterior_params.xlsx from The antique genetic plight of the Mediterranean monk seal (<i>Monachus monachus</i>)

description: Disentangling the impact of Late Quaternary climate change from human activities can have crucial implications on the conservation of endangered species. We investigated the population genetics and demography of the Mediterranean monk seal (<i>Monachus monachus</i>), one of the world's most endangered marine mammals, through an unprecedented dataset encompassing historical (extinct) and extant populations from the eastern North Atlantic to the entire Mediterranean Basin. We show that Cabo Blanco (Western Sahara/Mauritania), Madeira, Western Mediterranean (historical range) and Eastern Mediterranean regions segregate into four populations. This structure is likely the consequence of recent drift, combined with long-term isolation by distance (<i>R</i><sup>2</sup> = 0.7), resulting from prevailing short-distance (less than 500 km) and infrequent long-distance dispersal (less than 1500 km). All populations (Madeira especially), show high levels of inbreeding and low levels of genetic diversity, seemingly declining since historical time, but surprisingly not being impacted by the 1997 massive die-off in Cabo Blanco. Approximate Bayesian Computation analyses support scenarios combining local extinctions and a major effective population size decline in all populations during Antiquity. Our results suggest that the early densification of human populations around the Mediterranean Basin coupled with the development of seafaring techniques were the main drivers of the decline of Mediterranean monk seals.
DOI: 10.6084/m9.figshare.20445214
title: Table S4. Microsatellite null alleles across populations from The antique genetic plight of the Mediterranean monk seal (<i>Monachus monachus</i>)

description: Table presenting the comparison of estimated null allele frequencies analyses conducted in MICRO-CHECKER (Van Oosterhout et al., 2004). Null: final evidence for null allele presence per data set as returned by MICRO-CHECKER; The estimated null allele frequency for each locus is compared to the null allele frequencies obtained using methods by Chakraborty (Chakraborty et al., 1992) and Brookfield (Brookfield, 1996). Homozygote excess: analysis indicates homozygote excess at this locus
DOI: 10.6084/m9.figshare.20445217
title: Table_S11_ABC_posterior_params.xlsx from The antique genetic plight of the Mediterranean monk seal (<i>Monachus monachus</i>)

description: Disentangling the impact of Late Quaternary climate change from human activities can have crucial implications on the conservation of endangered species. We investigated the population genetics and demography of the Mediterranean monk seal (<i>Monachus monachus</i>), one of the world's most endangered marine mammals, through an unprecedented dataset encompassing historical (extinct) and extant populations from the eastern North Atlantic to the entire Mediterranean Basin. We show that Cabo Blanco (Western Sahara/Mauritania), Madeira, Western Mediterranean (historical range) and Eastern Mediterranean regions segregate into four populations. This structure is likely the consequence of recent drift, combined with long-term isolation by distance (<i>R</i><sup>2</sup> = 0.7), resulting from prevailing short-distance (less than 500 km) and infrequent long-distance dispersal (less than 1500 km). All populations (Madeira especially), show high levels of inbreeding and low levels of genetic diversity, seemingly declining since historical time, but surprisingly not being impacted by the 1997 massive die-off in Cabo Blanco. Approximate Bayesian Computation analyses support scenarios combining local extinctions and a major effective population size decline in all populations during Antiquity. Our results suggest that the early densification of human populations around the Mediterranean Basin coupled with the development of seafaring techniques were the main drivers of the decline of Mediterranean monk seals.
DOI: 10.6084/m9.figshare.20445202.v1
title: Table S2. Samples and genotypes information from The antique genetic plight of the Mediterranean monk seal (<i>Monachus monachus</i>)

description: Table presenting the samples used in the study, their metadata and microsatellite genotypes. ID: sample identifier (PG database); Region: sampling region, Simplified_region: larger area than the latter for which regions were grouped together to form larger entities on which population genetics statistics can be estimated; Longitude & Latitude: approximate sample geographic coordinates (in WGS84-degree decimal); Year: sampling year as reported by collectors; Simplified_year: approximated sampling time only modified for non-integer values; Period: categorized period of sampling modern (≧ 1980), historic (&lt; 1980); Country: sampling country; Island locality: more precise name of the sampling locality when available; Age: age of the animal at sampling; Sex: sex of the animal; NS: specimen not sequenced at the mtDNA CR1 locus; #called_alleles: number of called alleles; #uncalled_alleles: number of uncalled alleles; Missing rate: sample based loci missing rate.
DOI: 10.6084/m9.figshare.20445214.v1
title: Table S4. Microsatellite null alleles across populations from The antique genetic plight of the Mediterranean monk seal (<i>Monachus monachus</i>)

description: Table presenting the comparison of estimated null allele frequencies analyses conducted in MICRO-CHECKER (Van Oosterhout et al., 2004). Null: final evidence for null allele presence per data set as returned by MICRO-CHECKER; The estimated null allele frequency for each locus is compared to the null allele frequencies obtained using methods by Chakraborty (Chakraborty et al., 1992) and Brookfield (Brookfield, 1996). Homozygote excess: analysis indicates homozygote excess at this locus
DOI: 10.6084/m9.figshare.20651349
title: Dataset_Absence of mitochondrial responses in muscles of zebrafish exposed to heat waves

description: Data from the accepted MS in CBP-A entitled 'Absence of mitochondrial responses in muscles of zebrafish exposed to several heat waves' by Thoral et al.
DOI: 10.6084/m9.figshare.20651349.v1
title: Dataset_Absence of mitochondrial responses in muscles of zebrafish exposed to heat waves

description: Data from the accepted MS in CBP-A entitled 'Absence of mitochondrial responses in muscles of zebrafish exposed to several heat waves' by Thoral et al.
DOI: 10.6084/m9.figshare.20289075.v3
title: Supplementary_File_2A-Measurements

description: Supplementary_File_2A-Measurements
DOI: 10.6084/m9.figshare.20353428
title: Truglyde suture study dataset

description: This was a randomized study on two different absorbable suture materials.
DOI: 10.6084/m9.figshare.20289075
title: Supplementary_File_2A-Measurements

description: Supplementary_File_2A-Measurements
DOI: 10.6084/m9.figshare.20289075.v5
title: Supplementary_File_2A-Measurements

description: Supplementary_File_2A-Measurements
DOI: 10.6084/m9.figshare.20289075.v4
title: Supplementary_File_2A-Measurements

description: Supplementary_File_2A-Measurements
DOI: 10.6084/m9.figshare.20651682
title: Supplementary Files.zip from <i>GNL3</i> is an evolutionarily conserved stem cell gene influencing cell proliferation, animal growth and regeneration in the hydrozoan <i>Hydractinia</i>

description: <i>Nucleostemin</i> (<i>NS</i>) is a vertebrate gene preferentially expressed in stem and cancer cells, which acts to regulate cell cycle progression, genome stability and ribosome biogenesis. <i>NS</i> and its paralogous gene, <i>GNL3-like</i> (<i>GNL3 L</i>), arose in the vertebrate clade after a duplication event from their orthologous gene, <i>G protein Nucleolar 3</i> (<i>GNL3</i>). Research on invertebrate <i>GNL3</i>, however, has been limited. To gain a greater understanding of the evolution and functions of the <i>GNL3</i> gene, we have performed studies in the hydrozoan cnidarian <i>Hydractinia symbiolongicarpus</i>, a colonial hydroid that continuously generates pluripotent stem cells throughout its life cycle and presents impressive regenerative abilities. We show that <i>Hydractinia GNL3</i> is expressed in stem and germline cells. The knockdown of <i>GNL3</i> reduces the number of mitotic and S-phase cells in <i>Hydractinia</i> larvae of different ages. Genome editing of <i>Hydractinia GNL3</i> via CRISPR/Cas9 resulted in colonies with reduced growth rates, polyps with impaired regeneration capabilities, gonadal morphological defects, and low sperm motility. Collectively, our study shows that <i>GNL3</i> is an evolutionarily conserved stem cell and germline gene involved in cell proliferation, animal growth, regeneration and sexual reproduction in <i>Hydractinia</i>, and sheds new light into the evolution of GNL3 and of stem cell systems.
DOI: 10.6084/m9.figshare.20651682.v1
title: Supplementary Files.zip from <i>GNL3</i> is an evolutionarily conserved stem cell gene influencing cell proliferation, animal growth and regeneration in the hydrozoan <i>Hydractinia</i>

description: <i>Nucleostemin</i> (<i>NS</i>) is a vertebrate gene preferentially expressed in stem and cancer cells, which acts to regulate cell cycle progression, genome stability and ribosome biogenesis. <i>NS</i> and its paralogous gene, <i>GNL3-like</i> (<i>GNL3 L</i>), arose in the vertebrate clade after a duplication event from their orthologous gene, <i>G protein Nucleolar 3</i> (<i>GNL3</i>). Research on invertebrate <i>GNL3</i>, however, has been limited. To gain a greater understanding of the evolution and functions of the <i>GNL3</i> gene, we have performed studies in the hydrozoan cnidarian <i>Hydractinia symbiolongicarpus</i>, a colonial hydroid that continuously generates pluripotent stem cells throughout its life cycle and presents impressive regenerative abilities. We show that <i>Hydractinia GNL3</i> is expressed in stem and germline cells. The knockdown of <i>GNL3</i> reduces the number of mitotic and S-phase cells in <i>Hydractinia</i> larvae of different ages. Genome editing of <i>Hydractinia GNL3</i> via CRISPR/Cas9 resulted in colonies with reduced growth rates, polyps with impaired regeneration capabilities, gonadal morphological defects, and low sperm motility. Collectively, our study shows that <i>GNL3</i> is an evolutionarily conserved stem cell and germline gene involved in cell proliferation, animal growth, regeneration and sexual reproduction in <i>Hydractinia</i>, and sheds new light into the evolution of GNL3 and of stem cell systems.
DOI: 10.5281/zenodo.7016191
title: Simulations of POPC/cholesterol mixtures at 298 K, three system sizes, Slipids

description: GROMACS input and output files. Slipids. Membranes with 64, 256, and 1024 lipids. New version, added missing file: CHOL4_medium.edr
DOI: 10.5281/zenodo.7016192
title: Simulations of POPC/cholesterol mixtures at 298 K, three system sizes, Slipids

description: GROMACS input and output files. Slipids. Membranes with 64, 256, and 1024 lipids.
DOI: 10.5281/zenodo.7022749
title: Simulations of POPC/cholesterol mixtures at 298 K, three system sizes, Slipids

description: GROMACS input and output files. Slipids. Membranes with 64, 256, and 1024 lipids. New version, added missing file: CHOL4_medium.edr
DOI: 10.5281/zenodo.7021846
title: mmWave IWR1642 dataset with interfering radar

description: Dataset consists of IQ data for multiple targets taken in the presence of an interfering radar for short range mode of mmWave radar sensor IWR1642. AWR1642 is an interfering radar. Each receiving elements data is in the form of number of ADC (analog to digital converter) samples by number of chirps by number of frames collected experimentally. An interfering radar was placed at 30deg line of sight and -30deg angles for 2m, 3m and 5m distances. Eg: Receiver1_srr_twotarget_withjammer_5m_1 has one of the receiver's element data for which radar was configured to srr mode, interfering radar is at 5m at an angle of -30deg . Receiver2_srr_twotarget_withjammer_5m has one of the receiver's element data for which radar was configured to srr mode, interfering radar is at 5m at an angle of 30deg .
DOI: 10.5281/zenodo.7021845
title: mmWave IWR1642 dataset with interfering radar

description: Dataset consists of IQ data for multiple targets taken in the presence of an interfering radar for short range mode of mmWave radar sensor IWR1642. AWR1642 is an interfering radar. Each receiving elements data is in the form of number of ADC (analog to digital converter) samples by number of chirps by number of frames collected experimentally. An interfering radar was placed at 30deg line of sight and -30deg angles for 2m, 3m and 5m distances. Eg: Receiver1_srr_twotarget_withjammer_5m_1 has one of the receiver's element data for which radar was configured to srr mode, interfering radar is at 5m at an angle of -30deg . Receiver2_srr_twotarget_withjammer_5m has one of the receiver's element data for which radar was configured to srr mode, interfering radar is at 5m at an angle of 30deg .
DOI: 10.6084/m9.figshare.19937960
title: Supplementary Material for: Acute Response of Engineered Cardiac Tissue to Pressure and Stretch

description: The heart is a dynamic organ, and the cardiac tissue experiences changes in pressure and stretch during the cardiac cycle. Existing cell culture and animal models are limited in their capacity to decouple and tune specific hemodynamic stresses implicated in the development of physiological and pathophysiological cardiac tissue remodeling. This study focused on creating a system to subject engineered cardiac tissue to either pressure or stretch stimuli in isolation and the subsequent evaluation of acute tissue remodeling. We developed a cardiac tissue chip containing three-dimensional (3-D) cell-laden hydrogel constructs and cultured them within systems where we could expose them to either pressure changes or volume changes as seen in the left ventricle. Acute cellular remodeling with each condition was qualitatively and quantitatively assessed using histology, immunohistochemistry, gene expression studies, and soluble factor analysis. Using our unique model systems, we isolated the effects of pressure and stretch on engineered cardiac tissue. Our results confirm that both pressure and stretch mediate acute stress responses in the engineered cardiac tissue. However, both experimental conditions elicited a similar acute phase injury response within this timeframe. This study demonstrates our ability to subject engineered cardiac tissue to either pressure or stretch stimuli in isolation, both of which elicited acute tissue remodeling responses.
DOI: 10.6084/m9.figshare.19937960.v1
title: Supplementary Material for: Acute Response of Engineered Cardiac Tissue to Pressure and Stretch

description: The heart is a dynamic organ, and the cardiac tissue experiences changes in pressure and stretch during the cardiac cycle. Existing cell culture and animal models are limited in their capacity to decouple and tune specific hemodynamic stresses implicated in the development of physiological and pathophysiological cardiac tissue remodeling. This study focused on creating a system to subject engineered cardiac tissue to either pressure or stretch stimuli in isolation and the subsequent evaluation of acute tissue remodeling. We developed a cardiac tissue chip containing three-dimensional (3-D) cell-laden hydrogel constructs and cultured them within systems where we could expose them to either pressure changes or volume changes as seen in the left ventricle. Acute cellular remodeling with each condition was qualitatively and quantitatively assessed using histology, immunohistochemistry, gene expression studies, and soluble factor analysis. Using our unique model systems, we isolated the effects of pressure and stretch on engineered cardiac tissue. Our results confirm that both pressure and stretch mediate acute stress responses in the engineered cardiac tissue. However, both experimental conditions elicited a similar acute phase injury response within this timeframe. This study demonstrates our ability to subject engineered cardiac tissue to either pressure or stretch stimuli in isolation, both of which elicited acute tissue remodeling responses.