cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5123158.v1
title: Supplementary Material for: Computerised Cognitive Behavioural Therapy for Insomnia: A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> Computerised cognitive behavioural therapy (CCBT) is an innovative mode of delivering services to patients with psychological disorders. The present paper uses a meta-analysis to systematically review and evaluate the effectiveness of CCBT for insomnia (CCBT-I). <b><i>Method:</i></b> A comprehensive search was conducted on 7 databases including MEDLINE, PsycINFO, EMBASE, CINAHL, Cochrane Library, Social Sciences Citation Index and PubMed (up to March 2011). Search terms covered 3 concepts: (1) [<i>internet, web, online, computer-aided, computer-assisted, computer-guided, computerized</i> OR<i> computerised</i>] AND (2) [<i>CBT, cognitive therapy, behavio(u)ral therapy</i> OR <i>behavio(u)r therapy</i>] AND (3) [<i>insomnia, sleep disorders </i>OR<i> sleeping problem</i>]. <b><i>Results:</i></b> 533 potentially relevant papers were identified, and 6 randomised controlled trials (RCTs) that met the selection criteria were included in the review and analysis. Two RCTs were done by the same group of investigators (Ritterband and colleagues) using the same internet programmes. Post-treatment mean differences between groups showed that the effects of CCBT-I on sleep quality, sleep efficiency, the number of awakenings, sleep onset latency and the Insomnia Severity Index were significant, ranging from small to large effect sizes. However, effects on wake time after sleep onset, total sleep time and time in bed were non-significant. On average, the number needed to treat was 3.59. The treatment adherence rate for CCBT-I was high (78%). <b><i>Conclusion:</i></b> The results lend support to CCBT as a mildly to moderately effective self-help therapy in the short run for insomnia. CCBT-I can be an acceptable form of low-intensity treatment in the stepped care model for insomnia.
DOI: 10.6084/m9.figshare.16728871.v1
title: Submarine relief map of the marine ecosystems in the Mexican Caribbean: Cabo Catoche - Xcalak

description: The map represents the spatial distribution of the submarine relief in shallow waters of the Mexican Mesoamerican Barrier Reef System, from Cabo Catoche to Xcalak, in an area of 1001 km<sup>2</sup>, with an average maximum depth of 18 m. It was generated from the analysis of satellite bathymetry resulting from the processing of 23 WorldView-2 satellite images (2009-2015), and with information from in-situ bathymetric soundings. A classification in two hierarchical orders was defined: the first represents the continental shelf in two terrace levels: (A) first level and (B) second level; and the second order considers erosional, accretionary and organic accretion forms: (A1) lagoon floor, (A2) back reef, (A3) reef crest, (A4) fore reef, and (A5) rocky ridge. The information is presented in shapefile format. This product is the result of the ArrecifeSAM project, coordinated by CONABIO as part of the Marine-Coastal Information and Analysis System (SIMAR) (https://simar.conabio.gob.mx).<br><b>Acknowledgement:</b>The authors acknowledge the logistical and technical support provided by National Financial Trust Fund for Biodiversity, National Commission for the Knowledge and Use of Biodiversity (CONABIO), National Commission of Natural Protected Areas Mexico (CONANP) and National Autonomous University of Mexico - UNAM (Marine Science and Limnology Institute UASA-ICMyL-UNAM).
DOI: 10.6084/m9.figshare.21206009.v1
title: Skipper RNA-protein interaction profiles

description: Processed output from RNA-protein interaction tool Skipper including transcriptomic windows, repetitive elements, 75 nt fixed width finemapped windows, variable width and fixed width background windows, for both ENCODE eCLIP datasets and new translation eCLIP data. <br> The manifest of samples, expression-filtered gene annotations, and summaries of enriched windows for eCLIP samples are also included. <br> See corresponding GitHub: https://github.com/YeoLab/skipper/
DOI: 10.25405/data.ncl.11948925.v2
title: Co-sleep: Designing workplace-based wellness through awareness of sleep deprivation (Sleep Diary)

description: The data sheet contain 8 subjects one week sleep diary records
DOI: 10.6084/m9.figshare.7886342.v1
title: Australian native bees foraging from <i>Persoonia oblongata</i> (Proteaceae)

description: Bees in the subgenera <i>Leioproctus (Cladocerapis) </i>and <i>Leioproctus (Filiglossa) </i>(Hymenoptera: Colletidae) have morphological modifications that assist foraging from <i>Persoonia</i> flowers. The behaviour of these bees has been described in detail (Maynard, 1994, 1995; Bernhardt & Weston, 1996), but video recordings provide useful confirmation and, in this case, illustrate how flower habit can affect minor aspects of behaviour. On the pendulous flowers of <i>Persoonia oblongata, </i><i>L. (Cladocerapis)</i> species press their faces against the anthers, not the style, when foraging for nectar. Although <i>L. (Filiglossa) </i>bees are widely believed to be too small to be effective pollinators, on <i>P. oblongata </i>they pass directly over the relatively short style when moving from one anther to another. <br>Other bees visit <i>Persoonia</i> flowers, but many collect only nectar and few spend very long on the flowers.<br> <br> Bernhardt P & Weston PH. 1996 The pollination ecology of <i>Persoonia</i> (Proteaceae) in eastern Australia. <i>Telopea</i> <b>6</b>, 775–804. Maynard GV. 1994. Revision of <i>Leioproctus (Filiglossa)</i> Rayment (Hymenoptera: Colletidae). <i>Journal of the Australian Entomological Society</i> <b>33</b>, 299–304. Maynard GV. 1995. Pollinators of Australian Proteaceae. In: Flora of Australia Vol 16 (ed. P. McCarthy) pp.<b> </b>30–36. CSIRO, Melbourne.
DOI: 10.6084/m9.figshare.24602406.v7
title: Moreira et al 2023

description: In this study, we conducted phylogenetically controlled analyses testing for associations between genome size, climatic variables, plant traits (defenses and nutrients), and herbivory across 29 oak species
DOI: 10.6084/m9.figshare.25951627.v1
title: Beetle's breeding data-0531.xlsx

description: Records of breeding beetle larvae under different environmental conditions.
DOI: 10.6084/m9.figshare.26531344.v3
title: segmented RNA virus

description: we can find novel segmented rna virus
DOI: 10.6084/m9.figshare.4836407.v1
title: PaperBLAST_Apr2017.tar.gz

description: This the April 2017 version of the PaperBLAST database, a collection of protein sequences that are linked to scientific articles.<br>
DOI: 10.6084/m9.figshare.20505747.v1
title: GrantPeerReview_Scoring_Ranking_DataA1b

description: Scoring and ranking data from peer review of biomedical research funding applications in 2020. Proposals were reviewed by 2 individual reviewers before the meeting, and then by a panel of experts at the meeting, who then scored each proposal after discussion on a scale of 1.0 to 5.0 (1 is the most meritorious). Then, after all proposals have been discussed, reviewers can look at the list of proposals (only those without conflicts) and their scores and then rank their top six proposals on the panel. Scoring and ranking data per proposal and per reviewer are represented, as well as the individual pre-meeting assignments, pre-meeting scores and any conflicts of interest. Panel scores should be present for every reviewer unless they had a conflict or in some instances were not present during the discussion.
DOI: 10.6084/m9.figshare.24066363.v1
title: EtpA IgA.csv

description: serum IgA responses to EtpA
DOI: 10.6084/m9.figshare.28945406.v1
title: Anonymized Nederlands Instituut voor Beeld en Geluid Qualitative Interview Data

description: This research encompassed my contribution of Group 4, Surveillance Logic. I conducted qualitative interviews on over 30 different museum visitors inside the Beeld en Geluid Media Museum in Hilversum. This research was conducted in order to answer my the objective for the group: “how can we illuminate the way of learning about tracking and surveillance without being heavy handed in our approach?”<br><br>This interview data was also going to be personally used for my thesis paper which sought to answer the following research question and subquestions:<br><br>"How does the visibility of surveillance in museum spaces impact visitor engagement and privacy awareness, and do people react differently to physical vs. digital surveillance?" <br><br>and<br><br>"How do museum visitors perceive and respond to visible surveillance technologies, and how does this affect their sense of consent and emotional comfort in the space?" and "To what extent are visitors aware of physical surveillance (e.g., cameras) compared to digital tracking, and how do these forms of surveillance differently impacttheir engagement and privacy concerns?"
DOI: 10.6084/m9.figshare.25941481.v1
title: Cunningham et al. - Fucus aquaculture MS data

description: All data and R script related to Cunningham et al. Aquaculture of <i>F. serratus</i>
DOI: 10.6084/m9.figshare.22332655.v2
title: Onco-fetal CAF Identification

description: Unsupervised clustering on 1,712 HCC mesenchymal cells resulted in 9 clusters with specific gene expression signatures. In human fetal liver, a total of 8 clusters were identified with specific gene signatures expression. We further integrated the scRNA-seq data from HCC tumor, adjacent normal tissues, fetal liver and healthy liver tissues, and applied Seurat v3 to integrate and normalize the data.
DOI: 10.6084/m9.figshare.24639279.v1
title: AF2.1 predictions of host-host, host-virus and virus-virus dimers from HSV-1 infected cells.

description: Intact HSV-1 infected cells were cross-linked using DSSO cross-linker at 24hpi. Cross-linked PPIs were predicted using AF2.1 and corresponding .pdb files are uploaded.
DOI: 10.17605/osf.io/wcfu7
title: Neural mechanisms of confidence propagation in hierarchical, partially-observable decision-making

description: Dataset and analysis codes associated with Katayama et al., "Neural mechanisms of confidence propagation in hierarchical, partially-observable decision-making".
DOI: 10.6084/m9.figshare.12369188.v1
title: Fig-1-revisSciR

description: Fig 1-SciRe-Maïza et al.
DOI: 10.6084/m9.figshare.5125549.v1
title: Supplementary Material for: CBASP@home: Ein internetbasiertes Situationsanalysen-Training zur Stabilisierung des Therapieerfolgs nach stationärer Therapie für chronisch depressive Patienten

description: <b><i>Hintergrund: </i></b>Aufbauend auf einer ambulanten CBASP-Behandlung wurde ein stationäres multidisziplinäres Konzept zur Behandlung chronischer Depression entwickelt. Eine Pilotstudie zeigte positive Ergebnisse hinsichtlich der Wirkung dieses Konzepts, jedoch berichteten einige Patienten, dass die 12-wöchige Therapie zu kurz und die Zeit unmittelbar nach Entlassung schwierig sei. Daher wurde CBASP@home als ein internetbasiertes Situationsanalysen (SA)-Training zur Stabilisierung des erzielten Behandlungserfolgs konzipiert. CBASP@home ist eine 3-monatige Step-down-Onlineintervention. Die Patienten werden dabei unterstützt, die erlernten SA zu Hause fortzuführen und in den Alltag zu transferieren. An insgesamt 9 Terminen füllten die Patienten das SA-Formular über einen Sicherheitsserver aus und erhielten von ihrem stationären Psychotherapeuten zeitnah Rückmeldung. <b><i>Fallbericht: </i></b>In der vorliegenden Phase-I-Studie wurde die Akzeptanz und Durchführbarkeit von CBASP@home an 2 Einzelfällen untersucht. CBASP@home wurde von beiden Patienten sehr gut angenommen und als sinnvolle Unterstützung bewertet. Zudem konnte bei beiden Patienten eine zunehmende Leistungssteigerung in der SA-Durchführung bei gleichzeitig rückläufiger depressiver Symptomatik bis zur Remission beobachtet werden. <b><i>Schlussfolgerungen: </i></b>Die beiden Einzelfallauswertungen liefern Hinweise, dass CBASP@home Transferprozesse vom stationären Setting in den Alltag erleichtern, Behandlungserfolge beibehalten bzw. Rückfällen vorbeugen kann. Wenn sich diese positiven Erfahrungen in zukünftigen Studien bestätigen sollten, kann CBASP@home wesentlich zur Verbesserung der langfristigen Versorgung chronisch depressiver Patienten beitragen.
DOI: 10.6084/m9.figshare.25710003.v1
title: Cartografia digital de la flora exòtica invasora al municipi de Girona

description: Cartografia digital de la flora exòtica invasora al municipi de Girona
DOI: 10.6084/m9.figshare.22691308.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.3558615.v1
title: Appendix A. A table of results from the linear mixed model.

description: A table of results from the linear mixed model.
DOI: 10.4121/12954911.v1
title: F-16 Aircraft Benchmark Based on Ground Vibration Test Data

description: The F-16 Ground Vibration Test benchmark features a high order system with clearance and friction nonlinearities at the mounting interface of the payloads.<br><br>The experimental data made available here were acquired on a full-scale F-16 aircraft on the occasion of the Siemens LMS Ground Vibration Testing Master Class.<br><br>During the test campaign, two dummy payloads were mounted at the wing tips to simulate the mass and inertia properties of real devices typically equipping an F-16 in ﬂight. The aircraft structure was instrumented with accelerometers. One shaker was attached underneath the right wing to apply input signals. The dominant source of nonlinearity in the structural dynamics was expected to originate from the mounting interfaces of the two payloads. These interfaces consist of T-shaped connecting elements on the payload side, slid through a rail attached to the wing side. A preliminary investigation showed that the back connection of the right-wing-to-payload interface was the predominant source of nonlinear distortions in the aircraft dynamics, and is therefore the focus of this benchmark study.<br><br>All the provided files and information together with a detailed description of the F-16 aircraft benchmark system are available for download here. This zip-file contains a detailed system description, the estimation and test data sets, and some pictures of the setup. The data is available in the .csv and .mat file format.<br>
DOI: 10.6084/m9.figshare.28328765.v2
title: Increased terrestrial ecosystem carbon storage associated with global utility-scale photovoltaic installation: Datasets

description: This dataset is associated with the paper titled "Increased terrestrial ecosystem carbon storage associated with global utility-scale photovoltaic installation".
DOI: 10.6084/m9.figshare.c.3918607_d7.v1
title: Additional file 7: Table S6. of Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection

description: FISH probes. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.7971083.v2
title: Zebrafish Tracking Analysis Tool

description: <b>Zebrafish Tracking Analysis Tool - runs in Matlab Version 2014</b><br>The software is unsupported so please collaborate with a software specialist to update to current Matlab version. This will need to be done annually. Please see Deakin et al. 2019 below for details. <br>Included are all files and the software code both indexed and formatted.<br><b>The software is free to use conditional upon citing the following in any outputs:</b>Deakin, AG, Buckley, J, AlZu'bi, HS, Cossins, AR, Spencer, JW, Al'Nuaimy, W, Young, IS, Thomson, JS & Sneddon, LU. 2019. Automated monitoring of behaviour in zebrafish after invasive procedures.<i> Scientific Reports DOI:10.1038/s41598-019-45464-w</i>AlZu'bi, HS. 2015. Analysis of human activities and animal behaviours based on computation intelligence. Ph.D Thesis, University of Liverpool, Liverpool, UK.
DOI: 10.15468/dl.3zknfh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia innesi (Fowler, 1934)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((51.9067 10.3601,51.6539 10.8496,44.9648 10.8496,44.9648 1.8496,45.9851 1.8496,46.3652 2.0796,48.3314 4.1285,49.4027 5.7662,49.6642 6.5145,51.2543 9.1551,51.377 9.8685,51.7452 10.0272,51.9067 10.3601))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013487-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.25540312.v1
title: UCE phylogenomics reveals a new tribe: Gondwanocentrini

description: UCE data processing:Sequencing raw reads were filtered and trimmed with Illumiprocessor (Faircloth 2013; Bolger et al. 2014), available in phyluce v1.7.1 (Faircloth 2016) and assembled with SPAdes version 3.15.5 (Bankevich et al. 2012). The resulting contigs were then processed following the Phyluce v1.7.1 pipeline (Faircloth 2016). Contigs were first queried against a FASTA file of all enrichment baits, creating a relational database with the location of the UCE loci. Samples that recovered &lt;100 UCE loci were discarded from the pipeline and not used in downstream analyses. Individual loci were then extracted and placed in separate FASTA files, and each locus was aligned using MAFFT v. 7.130b (Katoh et al. 2002; Katoh and Standley 2013) and trimmed with GBLOCKS v. 0.91b (Castresana 2000; Talavera and Castresana 2007) with reduced stringency settings (0.5, 0.5, 12, and 7 for b1–b4 settings, respectively). Alignments were filtered with different settings to produce two matrices with different levels of completeness, one with loci available for at least 70% and the other for at least 50% of the terminal taxa. All the bioinformatic processing and phylogenetic analyses were conducted in the High-Performance Computing server BEAGLE (Dell Power Edge R740) owned by IBUNAM, except for the sequence assembly, which was performed in the Galaxy public server (usegalaxy.eu)28s+COI sequences:Matrix data was assembled including sequences from previous studies plus new sequences, including the new taxa, from the raw sequence reads that were originally generated for UCE data using the "match_contigs_to_barcodes" tool available in Phyluce v1.7.1 (Faircloth 2016), using the 28S and COI sequences of <i>Conobregma</i> sp. 3 as templates. Only taxa with &gt; 1000 called bases were included as some with fewer bases were recovered far from expected relatives in preliminary analyses. Alignment of COI was trivial as there were no indels. The length-variable 28S sequences were aligned according to the secondary structure model of Gillespie et al. (2005) as in other studies (Butcher et al., 2014; Quicke et al., 2016). For the 28S gene, only confidently alignable positions were included in the analyses. Data were partitioned into the three COI codon positions and pairing and non-pairing bases of the RNA gene (Quicke et al. 2020, 2021).<br>The matrices added are UCE 50 and 70%, and 28S+COI. Additional files define the partition and secondary structure used for the 28S+COI matrix.
DOI: 10.25446/oxford.22888964.v1
title: Leon Fleischman

description: Leon FleischmanAmerican literary agent in Paris for Boni and Liveright. Fleischman met Joyce in Paris in late 1921; they corresponded sporadically for several years as Fleischman tried to interest Joyce in publishing Ulysses in the United States, but to no avail. He was married to Helen Kastor (who later married Giorgio Joyce) from 1915 to 1928 and was the father of David Fleischman. William Brockman
DOI: 10.6084/m9.figshare.28890905.v3
title: Source data.xlsx

description: Methane production from lignin in the axonic peatland
DOI: 10.6084/m9.figshare.13140434.v1
title: Directional phyllotactic bias in Calathea spp. (Marantaceae): a citizen science approach

description: This folder contains all code and data needed to reproduce results in the manuscript "Directional phyllotactic bias in Calathea spp. (Marantaceae): a citizen science approach" by Benjamin Durrington, Fiona Chong, and Daniel H. Chitwood.<br>The folder "statistical_tests" contains the code and data to reproduce Chi-squared tests and Wilcoxon signed rank tests used to test for phyllotactic bias.<br>The folder "figure_code" contains the code and data to reproduce plots for Figures 3 and 4.<br>The folder "google_image_search" contains google image search result images and links.<br>The folder "nursery_visits" contains pictures taken at nurseries and scored handedness for each plant.
DOI: 10.6084/m9.figshare.27098377.v1
title: Johnston_LFHP1c_short report data

description: LFHP-1c treatment of HuH7 and HepG2 cells.
DOI: 10.6084/m9.figshare.14604345.v2
title: Data File Details

description: <br>Data structure and organization included with orginal file.
DOI: 10.6084/m9.figshare.22559866.v3
title: Raw data and code

description: Data and code from our experiment examining the transmission of native Drosophila viruses, between and across species, and costs in terms of lifespan and offspring production to <i>Drosophila melanogaster.</i>Description of the data and file structureFor the figures in the main text, use the details below (files to load are also detailed in code comments) to re-run analyses and re-make figures;Fig. 1 - load exp_exp_transmission_vial_data.csv, and exp_exper_exposure_infected_dat.csv and run the code in transmission_prevalence.RFig. 2 - load EE_virus_w_fec_overtime_and_male_off_analysis.csv, and run the code in mortality_w_viral_infection.RFig. 3 - load EE_virus_w_fec_overtime_and_male_off_analysis.csv, and run the code in lifespan_models_and_plots.R (code also makes table S4, and Fig. S4, S5 and S8)Fig. 4 - load EE_virus_w_fec_overtime_and_male_off_analysis.csv, and run the code in lifetime_offspring_production_models_and_plots.R (code also makes table S5, S6, and S9, and Fig. S1, S7, S9, and S15)Code/SoftwareThe included R files can be used to re-run all models in the paper, and re-make all figures (including supplementary figures and tables). The script section outlines allow you to jump to particular figures or tables if needed. All analyses were run in R version 4.3.2, with all packages needed listed at the top of each script.If you'd prefer not to re-run models or want to inspect our run outputs, load the Rdata files into the scripts to look at the exact model runs desribed in the paper.The shell script included is for the analysis of public datasets downloaded from the SRA. To re-run this analysis you will need to download these datasets (which we provide details of in the supplementary methods), and re-run the script in a linux environment. We provide the output from this script (mapped reads across host genes and viruses) to make the heatmap produced in the paper (in the SRA_transmission_mapping_analyses.R file).
DOI: 10.17605/osf.io/jcfmp
title: Script for development of an educational video to help in home care for patients undergoing liver transplant

description: Roteiro para desenvolvimento de um vídeo educativo para auxílio nos cuidados domiciliares de paciente submetidos ao transplante hepático
Divisão em cinco cenas principais: higiene, monitoramento da glicemia, cuidados com a ferida operatória, sinais vitais e aplicação da insulina.