cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10211789
title: SAM_BOMEX_OUTPUT

description: This is a simulation result for the paper titled: Life Cycle Evolution of Inhomogeneous Mixing in Shallow Cumulus Clouds in JGR: Atmosphere. 
Information for the publication will be added after the review process.
Content: 

SAM_profile.tar is a group of profile data (.nc format) for all 12 cases with different boundary layer humidity and aerosol concentrations to make Fig.2. Descriptions of the variables are included.
prof.tar is a processed set of profiles from individual clouds for all cases used to make Figs.1a, 7, 8, 9, and 10. the number after the file name prof indicates: (1, in-cloud, 2, environmental shell, 3: mixing region, 4: cloud core, and 5: cloud edge.)
all_cloud_volume_data.zip is the Python Dataframe of total cloud average data to make Figs. 1c, 4, 5, and 6.  Each row represents an individually detected cloud, and each column shows the total cloud volume-averaged properties of the respective name.
DOI: 10.5281/zenodo.10264471
title: REMOTE: DEMO Norway KPIs

description: This dataset includes the KPIs of the DEMO Norway of the REMOTE project (GA 779541)
DOI: 10.5281/zenodo.10264875
title: REMOTE: DEMO Spain KPIs

description: This dataset includes the KPIs of the DEMO Spain of the REMOTE project (GA 779541)
DOI: 10.5281/zenodo.10264727
title: REMOTE: DEMO Greece KPIs

description: This dataset includes the KPIs of the DEMO Greece of the REMOTE project (GA 779541)
DOI: 10.5281/zenodo.10264726
title: REMOTE: DEMO Greece KPIs

description: This dataset includes the KPIs of the DEMO Greece of the REMOTE project (GA 779541)
DOI: 10.5281/zenodo.10263210
title: Ejemplo de datos subidos a Zenodo
title: Example of dataset uploaded to Zenodo
DOI: 10.5281/zenodo.10264876
title: REMOTE: DEMO Spain KPIs

description: This dataset includes the KPIs of the DEMO Spain of the REMOTE project (GA 779541)
DOI: 10.5281/zenodo.10263209
title: Ejemplo de versión 2 de datos subido a Zenodo
title: Segunda versión
DOI: 10.5281/zenodo.10265059
title: Ejemplo de versión 2 de datos subido a Zenodo
title: Segunda versión
DOI: 10.5281/zenodo.10265181
title: Differential Gene Expression Datasets for "Identification of candidate repurposable drugs to combat COVID‑19 using a signature‑based approach"

description: This dataset has the unfiltered transcriptome differential expression results used in the paper "Identification of candidate repurposable drugs to combat COVID‑19 using a signature‑based approach".
DOI: 10.5281/zenodo.10265182
title: Differential Gene Expression Datasets for "Identification of candidate repurposable drugs to combat COVID‑19 using a signature‑based approach"

description: This dataset has the unfiltered transcriptome differential expression results used in the paper "Identification of candidate repurposable drugs to combat COVID‑19 using a signature‑based approach".
DOI: 10.6073/pasta/c5e6555def9baf3e53180395e9e15099
title: Stream Macroinvertebrates in Hemlock and Deciduous Watersheds at Harvard Forest 2005-2007

description: Tsuga canadensis (Eastern Hemlock) is a common forest species that is declining throughout its range in the eastern United States because of the invasion of an non-native forest pest, Adelges tsugae (Hemlock Woolly Adelgid). This pest kills infected trees, and over time, infected stands are replaced by deciduous forests. The conversion of forests from Hemlock to deciduous species is predicted to impact the hydrology, chemistry, and biology of associated headwater streams. In this study, we examined the macroinvertebrate communities of two adjacent headwater streams with differing Hemlock influence in central Massachusetts. Abundance, taxa richness, diversity, and unique taxa were generally greater in the deciduous stream. Differences in the distribution of functional feeding groups were observed: the Hemlock stream had a greater percentage of collector-gatherers while the deciduous stream had a greater percentage of shredders and predators. These findings suggest that macroinvertebrate communities in streams draining Hemlock and deciduous watersheds may differ in structure and function, and that anticipated Hemlock mortality may impact the region’s stream ecology.
DOI: 10.5281/zenodo.8169681
title: Data for The Persistence of Memory in Ionic Conduction Probed by Nonlinear Optics

description: Experimental and computational data and analysis workflows for the manuscript "The Persistence of Memory in Ionic Conduction Probed by Nonlinear Optics" (doi:10.1038/s41586-023-06827-6). 
Python scripts:

paper_tke_plots_pub.py is for experimental TKE plots
analysis_pumping_pub.py is for computational TKE plots
Python requirements for the work-up of experimental data are the typical scientific python stack: numpy, matplotlib, scipy, pandas, sympy. Computational counterpart of the TKE experiment uses essentially the same hopping analysis as our computational study https://www.nature.com/articles/s41563-022-01316-z with its scripting available at https://github.com/apoletayev/anomalous_ion_conduction/ . The python package requirements are, in addition to above, networkx, freud, deepgraph, fastparquet, pyarrow. All python scripts work best when run in a notebook-like fashion cell by cell (e.g. with spyder).Experimental data: TKE, OKE, THz transmission.Computational data: example simulations of Na beta-alumina, K beta-alumina, K beta"-alumina. The files include tracking the simulation temperatures, centers of mass of the mobile ions, and hopping. Basic usage: download and unzip data. Install python dependencies (e.g. using conda or pip). Run python from the same directory in which the data folders are located. All paths in the scripts are relative.
DOI: 10.5281/zenodo.8169682
title: Data for The Persistence of Memory in Ionic Conduction Probed by Nonlinear Optics

description: Experimental and computational data and analysis workflows for the manuscript "The Persistence of Memory in Ionic Conduction Probed by Nonlinear Optics" (doi:10.1038/s41586-023-06827-6). 
Python scripts:

paper_tke_plots_pub.py is for experimental TKE plots
analysis_pumping_pub.py is for computational TKE plots
Python requirements for the work-up of experimental data are the typical scientific python stack: numpy, matplotlib, scipy, pandas, sympy. Computational counterpart of the TKE experiment uses essentially the same hopping analysis as our computational study https://www.nature.com/articles/s41563-022-01316-z with its scripting available at https://github.com/apoletayev/anomalous_ion_conduction/ . The python package requirements are, in addition to above, networkx, freud, deepgraph, fastparquet, pyarrow. All python scripts work best when run in a notebook-like fashion cell by cell (e.g. with spyder).Experimental data: TKE, OKE, THz transmission.Computational data: example simulations of Na beta-alumina, K beta-alumina, K beta"-alumina. The files include tracking the simulation temperatures, centers of mass of the mobile ions, and hopping. Basic usage: download and unzip data. Install python dependencies (e.g. using conda or pip). Run python from the same directory in which the data folders are located. All paths in the scripts are relative.
DOI: 10.5281/zenodo.10145357
title: Data associated with:  Recording animal-view videos of the natural world using a novel camera system and software package

description: Data associated with Vasas V, Lowell MC*, Villa J*, Jamison QD*, Siegle AG*, Katta PVR*, Bhagavathula P*, Kevan PG, Fulton D, Losin N, Kepplinger D, Salehian S, Forkner RE, Hanley D (2023) Recording animal-view videos of the natural world using a novel camera system and software package. PLoS Biology. DOI: 10.1371/journal.pbio.3002444
DOI: 10.5281/zenodo.10145358
title: Data associated with:  Recording animal-view videos of the natural world using a novel camera system and software package

description: Data associated with Vasas V, Lowell MC*, Villa J*, Jamison QD*, Siegle AG*, Katta PVR*, Bhagavathula P*, Kevan PG, Fulton D, Losin N, Kepplinger D, Salehian S, Forkner RE, Hanley D (2023) Recording animal-view videos of the natural world using a novel camera system and software package. PLoS Biology. DOI: 10.1371/journal.pbio.3002444
DOI: 10.5281/zenodo.10246560
title: Attitudes towards mandatory vaccination and the COVID certificate as a function of vaccination status and risk perception: A vignette-based study
DOI: 10.5281/zenodo.10246561
title: Attitudes towards mandatory vaccination and the COVID certificate as a function of vaccination status and risk perception: A vignette-based study
DOI: 10.25345/c5fb4wx5s
title: MassIVE MSV000093574 - GNPS - P. fluorescens in Succinate Minimal Media
title: Pseudomonas fluorescens was cultured in succinate minimal media and analyzed for metabolites.
DOI: 10.5281/zenodo.10116676
title: Regulation of stress-induced sleep fragmentation by preoptic glutamatergic neurons

description: Paper source data and original code. Please use The Script Information.txt file for information on which scripts were used to generate which figures.
DOI: 10.5281/zenodo.10116677
title: Regulation of stress-induced sleep fragmentation by preoptic glutamatergic neurons

description: Paper source data and original code. Please use The README.txt file for information on which scripts were used to generate which figures.
DOI: 10.5281/zenodo.10265583
title: Regulation of stress-induced sleep fragmentation by preoptic glutamatergic neurons

description: Paper source data and original code. Please use The Script Information.txt file for information on which scripts were used to generate which figures.
DOI: 10.5281/zenodo.10265708
title: OpenFF POPC Simulation (64:64 at 300K)

description: 128 lipid bilayer (64:64) hydrated with 5000 TIP3P waters. Equilibrated for 100 ns and simulated for 200 ns at 300K. Full input and output from: https://github.com/PEFrankel/OpenFF_Bilayer.
Parameters generated by OpenFF Toolkit (Mobley et al., 2018) + Interchange (https://zenodo.org/records/8229243). Forcefield line: 'openff-2.1.0.offxml' from OpenFF Sage (Boothroyd et al., 2023 / https://zenodo.org/records/7889050)
DOI: 10.5281/zenodo.10265709
title: OpenFF POPC Simulation (64:64 at 300K)

description: 128 lipid bilayer (64:64) hydrated with 5000 TIP3P waters. Equilibrated for 100 ns and simulated for 200 ns at 300K. Full input and output from: https://github.com/PEFrankel/OpenFF_Bilayer.
Parameters generated by OpenFF Toolkit (Mobley et al., 2018) + Interchange (https://zenodo.org/records/8229243). Forcefield line: 'openff-2.1.0.offxml' from OpenFF Sage (Boothroyd et al., 2023 / https://zenodo.org/records/7889050)
DOI: 10.25345/c59p2wh4c
title: MassIVE MSV000093575 - GNPS - P. fluorescens in CAA with Iron Infusion and High pH
title: Pseudomonas fluorescens were cultured in casamino acids media and analyzed on LC/MS with an iron infusion and high pH.
DOI: 10.5281/zenodo.10265965
title: OpenFF POPE Simulation (64:64 at 310K)

description: 128 lipid bilayer (64:64) hydrated with 5120 TIP3P waters. Equilibrated for 100 ns and simulated for 200 ns at 310K. Full input and output from: https://github.com/PEFrankel/OpenFF_Bilayer.
Parameters generated by OpenFF Toolkit (Mobley et al., 2018) + Interchange (https://zenodo.org/records/8229243). Forcefield line: 'openff-2.1.0.offxml' from OpenFF Sage (Boothroyd et al., 2023 / https://zenodo.org/records/7889050)
DOI: 10.5281/zenodo.10265964
title: OpenFF POPE Simulation (64:64 at 310K)

description: 128 lipid bilayer (64:64) hydrated with 5120 TIP3P waters. Equilibrated for 100 ns and simulated for 200 ns at 310K. Full input and output from: https://github.com/PEFrankel/OpenFF_Bilayer.
Parameters generated by OpenFF Toolkit (Mobley et al., 2018) + Interchange (https://zenodo.org/records/8229243). Forcefield line: 'openff-2.1.0.offxml' from OpenFF Sage (Boothroyd et al., 2023 / https://zenodo.org/records/7889050)
DOI: 10.7931/m6kn-3e23
title: Pseudopithomyces fungi and facial eczema
DOI: 10.5517/ccdc.csd.cc2cx4t8
title: CCDC 2201800: Experimental Crystal Structure Determination

description: Related Article: Avantika Hasija, Amy J. Thompson, Lakhvir Singh, S. N. Megha, Kiran S. R. N. Mangalampalli, John. C. McMurtrie, Mitradip Bhattacharjee, Jack K. Clegg, Deepak Chopra|2023|Small|19|2206169|doi:10.1002/smll.202206169
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dp70c
title: CCDC 2224932: Experimental Crystal Structure Determination

description: Related Article: Vikram Singh, Bal Krishna Mishra, Deepak Kumar, Bhoopendra Tiwari|2023|Org.Lett.|25|7089|doi:10.1021/acs.orglett.3c02366
description: Related Article: Vikram Singh, Bal Krishna Mishra, Deepak Kumar, Bhoopendra Tiwari|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f75ql
title: CCDC 2241229: Experimental Crystal Structure Determination

description: Related Article: Sungwon Cho, Junichi Usuba, Subhayan Chakraborty, Xiang Li, Grace G.D. Han|2023|Chem (Cell Press)|9|3159|doi:10.1016/j.chempr.2023.06.007
description: Related Article: Grace G.D. Han|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fzsks
title: CCDC 2263916: Experimental Crystal Structure Determination

description: Related Article: Uddit Narayan Hazarika, Jhorna Borah, Arobinda Kakoti, Rinki Brahma, Kangkan Sarmah, Ankur Kanti Guha, Prithiviraj Khakhlary|2023|Mat.Advs.|4|6304|doi:10.1039/D3MA00562C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fzslt
title: CCDC 2263917: Experimental Crystal Structure Determination

description: Related Article: Uddit Narayan Hazarika, Jhorna Borah, Arobinda Kakoti, Rinki Brahma, Kangkan Sarmah, Ankur Kanti Guha, Prithiviraj Khakhlary|2023|Mat.Advs.|4|6304|doi:10.1039/D3MA00562C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g05qd
title: CCDC 2264293: Experimental Crystal Structure Determination

description: Related Article: Manaswini Raj, Sumanta Kumar Padhi|2023|CSD Communication|||
description: Related Article: Manaswini Raj, Koushik Makhal, Dev Raj, Aman Mishra, Bhabani S. Mallik, Sumanta Kumar Padhi|2023|Dalton Trans.|52|17797|doi:10.1039/D3DT02733C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g0rlv
title: CCDC 2264847: Experimental Crystal Structure Determination

description: Related Article: Yuichiro Tokoro, Tetsuya Nakagawa, Shin-ichi Yamamoto, Toshio Koizumi, Toshiyuki Oyama|2023|Phys.Chem.Chem.Phys.(PCCP)|25|28113|doi:10.1039/D3CP03565D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g0rmw
title: CCDC 2264848: Experimental Crystal Structure Determination

description: Related Article: Yuichiro Tokoro, Tetsuya Nakagawa, Shin-ichi Yamamoto, Toshio Koizumi, Toshiyuki Oyama|2023|Phys.Chem.Chem.Phys.(PCCP)|25|28113|doi:10.1039/D3CP03565D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g0rpy
title: CCDC 2264850: Experimental Crystal Structure Determination

description: Related Article: Ritu Yadav, Bindusagar Das, Ashi Singh, Anmol, Ankita Sharma, Chinmoy Majumder, Subrata Kundu|2023|Dalton Trans.|52|16680|doi:10.1039/D3DT02765A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g0rqz
title: CCDC 2264851: Experimental Crystal Structure Determination

description: Related Article: Ritu Yadav, Bindusagar Das, Ashi Singh, Anmol, Ankita Sharma, Chinmoy Majumder, Subrata Kundu|2023|Dalton Trans.|52|16680|doi:10.1039/D3DT02765A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g0rr0
title: CCDC 2264852: Experimental Crystal Structure Determination

description: Related Article: Ritu Yadav, Bindusagar Das, Ashi Singh, Anmol, Ankita Sharma, Chinmoy Majumder, Subrata Kundu|2023|Dalton Trans.|52|16680|doi:10.1039/D3DT02765A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g0rs1
title: CCDC 2264853: Experimental Crystal Structure Determination

description: Related Article: Ritu Yadav, Bindusagar Das, Ashi Singh, Anmol, Ankita Sharma, Chinmoy Majumder, Subrata Kundu|2023|Dalton Trans.|52|16680|doi:10.1039/D3DT02765A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g2f88
title: CCDC 2266449: Experimental Crystal Structure Determination

description: Related Article: Jonathan F. Gebbia, Andrés Henao Aristizabal, Philippe Negrier, David Aguilà, Josep Lluis Tamarit, Luis Carlos Pardo|2023|Phys.Chem.Chem.Phys.(PCCP)|25|30553|doi:10.1039/D3CP02633G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g2f99
title: CCDC 2266450: Experimental Crystal Structure Determination

description: Related Article: Jonathan F. Gebbia, Andrés Henao Aristizabal, Philippe Negrier, David Aguilà, Josep Lluis Tamarit, Luis Carlos Pardo|2023|Phys.Chem.Chem.Phys.(PCCP)|25|30553|doi:10.1039/D3CP02633G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.10266048
title: OpenFF POPS Simulation with Na+ Counterions (64:64 at 298K)

description: 128 lipid bilayer (64:64) balanced with 128 Na+ ions and hydrated with 4480 SPC/E waters. Equilibrated for 100 ns and simulated for 200 ns at 298K. Full input and output from: https://github.com/PEFrankel/OpenFF_Bilayer.
Parameters generated by OpenFF Toolkit (Mobley et al., 2018) + Interchange (https://zenodo.org/records/8229243). Forcefield line: 'openff-2.1.0.offxml' from OpenFF Sage (Boothroyd et al., 2023 / https://zenodo.org/records/7889050)
DOI: 10.5281/zenodo.10266049
title: OpenFF POPS Simulation with Na+ Counterions (64:64 at 298K)

description: 128 lipid bilayer (64:64) balanced with 128 Na+ ions and hydrated with 4480 SPC/E waters. Equilibrated for 100 ns and simulated for 200 ns at 298K. Full input and output from: https://github.com/PEFrankel/OpenFF_Bilayer.
Parameters generated by OpenFF Toolkit (Mobley et al., 2018) + Interchange (https://zenodo.org/records/8229243). Forcefield line: 'openff-2.1.0.offxml' from OpenFF Sage (Boothroyd et al., 2023 / https://zenodo.org/records/7889050)