cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.dvkgpk
title: Occurrence Download

description: A dataset containing 10523 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sciurus aureogaster F.Cuvier, 1829"
 ]
}

 The dataset includes 10523 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077813-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/khxvtshbs2.2
title: On the Prebiotic Selection of Nucleotide Anomers: Computational Data

description: The data generated for this article are obtained from computational quantum chemistry. The data consist of raw total molecular energies, zero-point energy-corrected molecular energies, and Gibbs energies, all obtained from the Density Functional Theory (DFT) calculations with the commonly used DFT functional B3LYP and the Pople-style basis set 6-31G(d,p). The calculated data include two sets obtained in parallel and contrasted: A vacuum (gas) phase set and corresponding calculations performed with implicit aqueous solvation implemented through the self-consistent reaction field (SCRF) polarizable continuum model (PCM) using the integral equation formalism variant (IEFPCM) as implemented in the Gaussian 16 suite of programmes.  The calculations give the energy differences between the α-anomers and the corresponding β-anomers of the canonical nucleosides and nucleotides as well as compares different hypothetical reaction paths that lead to the present-day nucleosides/nucleotides assembled from their three building blocks, namely, the sugar, the phosphate, and the nitrogenous base. A comparison is also given for the relative energies of the uracil (U) and thymine (T) nucleosides/nucleotides in their canonical forms contrasted with their form that is not generally observed in biological systems, that is, where T is linked to a ribose sugar and U to a deoxyribose sugar. This data can form the nucleus for a much larger database that includes non-canonical bases, sugars, and even linkers (different sugars, or linkers other than sugars e.g. peptide links) in an effort to pin-down the thermodynamics that led to the observed present day selection of the particular forms of these nucleic acid building blocks. Machine learning may be used in the future on such an enlarged dataset to estimate the relative stabilities of synthetic nucleoside/nucleotides that could perhaps be used in molecular medicine applications.
DOI: 10.15156/bio/sh0870884.10fu
title: SH0870884.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/a4vvz3
title: Digital Catalogue of Biodiversity of Poland — Animalia: Arthropoda: Hexapoda: Insecta: Thysanoptera

description: The dataset presents a chapter of the Digital Catalogue of Biodiversity of Poland, comprising taxa of (infra)specific level, reported from Poland in the present administrative boundaries of the country. In this instance of the Catalogue, the list includes only taxa of confirmed occurrence, ignoring doubtful records that need verification as well as synonyms and other not valid names. The occurrence of each species is supported by a published reference.
DOI: 10.15468/dl.zh5jzu
title: Occurrence Download

description: A dataset containing 450 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-9.72324 29.08115,27.30309 29.08115,27.30309 44.16967,-9.72324 44.16967,-9.72324 29.08115))",
 "HasCoordinate is true",
 {
 "or" : [
 "TaxonKey is Astragalus parnassi (Boiss.) Podl.",
 "TaxonKey is Astragalus nebrodensis (Guss.) Strobl",
 "TaxonKey is Astragalus siculus Raf.",
 "TaxonKey is Astragalus gennarii Bacch. & Brullo",
 "TaxonKey is Astragalus genargenteus Moris",
 "TaxonKey is Astragalus sirinicus Ten.",
 "TaxonKey is Amelanchier embergeri (Favarger & Stearn) Landolt",
 "TaxonKey is Amelanchier ovalis subsp. embergeri Favarger & Stearn",
 "TaxonKey is Lycium intricatum subsp. pujosii Sauvage",
 "TaxonKey is Lycium intricatum Boiss.",
 "TaxonKey is Crataegus laciniata Ucria"
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 450 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013172-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.830253
title: Physical oceanography during Maria S. Merian cruise MSM22

description: DrHaardt Fluorescence offset is 0.029 (subtract this from the values to remove deck offset).Sound speed and pinger depth correction unkown. Use with care.
DOI: 10.1594/pangaea.860481
title: Physical oceanography during METEOR cruise M116

description: nc_uncertainty_p = 2.000000nc_uncertainty_t = 0.004000nc_uncertainty_s = 0.002000nc_uncertainty_o = 1.000000Fluorescence and Turbidity data still contain deck offsets. Use with caution
DOI: 10.17909/t9tg65
title: The ACS Survey of Galactic Globular Clusters ("ACSGGCT")

description: The ACS Globular Cluster Treasury program (PI: Ata Sarajedini, University of Florida, HST Program 10775) used the ACS/WFC instrument on board the Hubble Space Telescope to obtain uniform imaging of 65 of the nearest globular clusters to provide an extensive homogeneous dataset for a broad range of scientific investigations. In June 2013, six new clusters were added to the archive from the HST program 11586.
DOI: 10.24381/cds.1a072dd6
title: Ocean surface wave indicators for the European coast from 1977 to 2100 derived from climate projections
DOI: 10.24381/cds.b6473cc1
title: Water level change indicators for the European coast from 1977 to 2100 derived from climate projections
DOI: 10.5281/zenodo.10059442
title: Results of ab initio (DFT) calculations of fullerenes
title: Electron-phonon renormalisation of HOMO, LUMO and gap

description: This is the collection of input and output files of ground state DFT calculations of fullerenes. They were carried out using Quantum Espresso. These calculations correspond to the article Electron-vibrational renormalization in fullerenes through ab initio and machine learning methods, by Pablo Garcıa-Risueno, Eva Armengol, Angel Garcıa-Cerdana, David Carrasco-Busturia and Juan Marıa Garcıa-Lastra. The results make it possible to calculate renormalisations of electronic eigenvalues due to electron-vibrational (electron-phonon) interaction using the frozen-phonon method.
DOI: 10.5281/zenodo.10424322
title: Mitigating urban heat island through neighboring rural land cover: Dataset

description: A dataset of the manuscript "Mitigating urban heat island through neighboring rural land cover". Includes: Land surface temperature acquisition code (Google Earth Engine) - Average_LST_GEE.sh; Codes for calculating urban development intensity - UrbanDevelopmentIntensity.py; Regression, Machine Learning, Interpretable Machine Learning Code - AllRegression.py, SHAP.py, ALE.py; a zip file containing the data used in the calculations - OperationalData.rar.
DOI: 10.5281/zenodo.10524830
title: RefEx Project - Dataset and Gold Standard

description: The files represent the new version of Cioffi, A. (2022) Data for Testing and Evaluating References Extraction and Parsing Tools (1.0) https://doi.org/10.5281/zenodo.6182066. The 56 files of Cioffi, 2022 were corrected and additional 56 PDFs were manually annotated and aligned to the project guidelines. The TEI files of the whole dataset (112 documents) can be found under GoldStandard_TEI zip folder, while the PDFs are in GoldStandard_PDF folder.GoldStandard.txt contains the list of the bibliographic references of each article. When an entry is marked as "Restricted", it means the correspondent PDF is not in Open Access format, thus it is not shared in the present publication and cannot be found in the GoldStandard_PDF folder, the other Open Access papers are shared in it.The code can be found at Pagnotta (2024). olgagolgan/RefEx: RefEx project code (code). Zenodo. https://doi.org/10.5281/zenodo.10468608.

The output dataset of Anystyle, GROBID and OUTCITE can be found here  Pagnotta, O (2024). RefEx Project - Output Dataset (Anystyle, GROBID, OUTCITE) (Version 1) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.10524898

The annotated training dataset for GROBID can be found here Pagnotta, O. (2024). RefEx Project - GROBID annotation aligned Gold Standard (Version 1) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.10529646 

The trained GROBID citation models can be found here  Pagnotta, O. (2024). RefEx Project - trained GROBID citation models. Zenodo. https://doi.org/10.5281/zenodo.10529709.  

Some results can be found here Pagnotta, O. (2023). Investigating the performance of GROBID and OUTCITE (Version v1). Zenodo. https://doi.org/10.5281/zenodo.10036455

The work is part of my Thesis research for the Digital Humanities and Digital Knowledge Master's Course at University of Bologna.
DOI: 10.5281/zenodo.10650252
title: USV, buoy, modelled MLD and meteorological data from Fragoso et al 2024 JGR Oceans
DOI: 10.5281/zenodo.3824876
title: SignalTrain LA2A Dataset

description: LA-2A Compressor data to accompany the paper "SignalTrain: Profiling Audio Compressors with Deep Neural Networks," https://arxiv.org/abs/1905.11928 Accompanying computer code: https://github.com/drscotthawley/signaltrain A collection of recorded data from an analog Teletronix LA-2A opto-electronic compressor, for various settings of the Peak Reduction knob. Other knobs were kept constant. Audio samples present in these files are either 'randomly generated', or downloaded audio clips with Create Commons licenses, or are property of Scott Hawley freely distributed as part of this dataset. Data taken by Ben Colburn, supervised by Scott Hawley <strong>Revisions in v.1.1:</strong> Made the following corrections to discrepancies in original dataset: Only one of file: 235, 236 $ rm Train/target_235_LA2A_2c__0__70.wav $ rm Val/input_236_.wav In wrong directory: 245 $ mv Train/input_245_.wav Val/ Mismatched length and time alignment: 148, 148, 149, 150, 152 All were had targets delayed by 8583 samples relative to inputs, and were shorter. Truncated beginning of inputs to make them the same as targets. Used new script check_dataset.py to fix & overwrite earlier version: $ signaltrain/utils/check_dataset.py --fix SignalTrain_LA2A_Dataset/
description: {"references": ["arXiv:1905.11928"]}
DOI: 10.6084/m9.figshare.12199628.v1
title: ClimPlant: realized climatic niches of vascular plants in European forest understoreys

description: The ClimPlant database contains information on the distribution of monthly, growing-season, and annual mean, minimum and maximum temperature and total precipitation within the distribution range of 968 European forest plants.<br>Data in 56 csv-files with 1000 values for monthly, growing season and annual observations of mean, minimum, maximum temperature and precipitation in the distribution range for every species. One summary csv-file with summary statistics (mean, median, 5<sup>th</sup> and 95<sup>th</sup> percentile) for every species, of each climatic variable, together with seven key geographical descriptors: area of the distribution range, latitude and longitude of the centroid, and northern, eastern, western and southern range limit within the study area. <br><br> More info in Vangansbeke et al., 2021, Global Ecology and Biogeography, 30(6), 1183–1190. https://doi.org/10.1111/geb.13303<br><br><b><br></b><b>ClimPlant: realized climatic niches of vascular plants in European forest understoreys</b><br><br> Pieter Vangansbeke <sup>a</sup>, František Máliš <sup>b</sup>, Radim Hédl <sup>c</sup>, Markéta Chudomelová <sup>c</sup>, Ondřej Vild <sup>c</sup>, Monika Wulf <sup>d</sup>, Ute Jahn <sup>d</sup>, Erik Welk <sup>e</sup>, Francisco Rodríguez-Sánchez <sup>f,g</sup> & Pieter De Frenne <sup>a</sup> <i><sup>a</sup></i><i> </i><i>Forest & Nature Lab, Department of Environment, Ghent University, Geraardsbergsesteenweg 267, 9090 Melle-Gontrode, Belgium.</i> <i><sup>b </sup></i><i>Faculty of Forestry, Technical University in Zvolen, T. G. Masaryka 24, SK-960 01 Zvolen, Slovakia</i> <i><sup> c </sup></i><i>Institute of Botany, Czech Academy of Sciences, Lidická 25/27, 60200 Brno, Czech Republic.<sup></sup></i> <i><sup>d </sup></i><i>Research Area 2, Leibniz - Centre for Agricultural Landscape Research (ZALF), Eberswalder Straße 84, D-15374 Müncheberg, Germany</i> <i><sup>e </sup></i><i>Institute for Biology/Geobotany and Botanical Garden, Martin-Luther-University Halle-Wittenberg, Große Steinstrasse 79/80, D-06108 Halle, Germany<sup></sup></i> <i><sup>f </sup>Department of Plant Sciences, University of Cambridge. Cambridge CB2 3EA, United Kingdom.</i><b> </b> <i><sup>g </sup>Departamento de Biología Vegetal y Ecología, Universidad de Sevilla. Avda. Reina Mercedes s/n, 41012 Sevilla (Spain).</i><b> </b><br><b><br></b><br><b>Corresponding author:</b>Pieter Vangansbekepieter.vangansbeke@ugent.be<br>
DOI: 10.6084/m9.figshare.24960669
title: Land use modulates resistance of grasslands against future climate and inter-annual climate variability in a large field experiment

description: Datasets on plant diversity and productivit in response to manipulated future climate and inter-anuall climate variability (details on metadata are given in datafiles).
DOI: 10.6084/m9.figshare.25737993
title: Conventional Superconductivity in the Doped Kagome Superconductor Cs(V0.86Ta0.14)3Sb5 from Vortex Lattice Studies

description: Data plotted in Fig. 1b, 2, 3 and 4
DOI: 10.15139/s3/11900
title: National Longitudinal Study of Adolescent to Adult Health (Add Health) Wave I, 1994-1995

description: The National Longitudinal Study of Adolescent to Adult Health (Add Health) is a longitudinal study of a nationally representative sample of adolescents in grades 7-12 in the United States during the 1994-95 school year. The Add Health cohort has been followed into young adulthood with four in-home interviews, the most recent in 2008, when the sample was aged 24-32*. Add Health combines longitudinal survey data on respondents’ social, economic, psychological and physical well-being with contextual data on the family, neighborhood, community, school, friendships, peer groups, and romantic relationships, providing unique opportunities to study how social environments and behaviors in adolescence are linked to health and achievement outcomes in young adulthood. The fourth wave of interviews expanded the collection of biological data in Add Health to understand the social, behavioral, and biological linkages in health trajectories as the Add Health cohort ages through adulthood. Wave I The public use dataset for Wave I contains information collected in 1994-95 from Add Health’s nationally representative sample of adolescents. This dataset includes Wave I respondents and consists of one-half of the core sample, chosen at random, and one-half of the oversample of African-American adolescents with a parent who has a college degree. The total number of Wave I respondents in this dataset is approximately 6,500. The Wave I public use dataset includes information from each of the following sources (as available): In-School Questionnaire Wave I In-Home Interview Add Health Picture Vocabulary Test (AHPVT), an abbreviated version of the Peabody Picture Vocabulary Test—Revised, with age-standardized scores for adolescent respondents Wave I Parent Questionnaire Contextual data In-school network data Weights *17 respondents in the Wave IV public use sample were 33 years old at the time of the interview.
DOI: 10.15156/bio/sh0870885.10fu
title: SH0870885.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.1594/pangaea.869361
title: Physical oceanography during METEOR cruise M106
DOI: 10.1594/pangaea.934435
title: Hydrochemistry of water samples during METEOR cruise M106

description: Nutrient samples were frozen at -20˚C and transported to the home laboratory where they were measured using a QuAAtro gas segmented continuous flow analyzer (AutoAnalyzer) from SEAL Analytical. Particulate organic matter (POM) distribution in the water column was determined after filtration onto pre combusted, acid-washed GF/F filters (Franz et al., 2012a). For particulate organic carbon (POC) and particulate nitrogen (PN), filters were exposed to fuming hydrochloric acid for 12 h to remove carbonate and subsequently dried (60 °C, 12 h). Analyses were carried out with a Euro EA elemental analyser calibrated with an acetanilide standard. Particulate organic phosphorus (POP) collected on GF/F filters was determined colorimetrically as ortho-phosphate after potassium peroxydisulphate digestion following the method of Hansen and Koroleff (1999).
description: Winkler data are not finally cross checked
DOI: 10.17632/c5x5whjx42.1
title: Experimental data

description: Our experimental data provided here are consisting of: 
(1) Original files from the deformation experiments. All the data were recorded with frequency of 1 second (ti). Recorded parameters are stress (fi), confining pressure (pci) and displacement of sigma-1 (deformation) piston (dxi). 
(2) Original FTIR spectra from two experimental sets with H2O addition range 0 - 0.5 wt% (for H2O amount in samples, check Table 1 in the article).
(3) Most important original EBSD files (.ctf).
DOI: 10.18112/openneuro.ds003717.v1.1.0
title: Visual and audiovisual speech perception associated with increased functional connectivity between sensory and motor regions
DOI: 10.23729/93af7b3a-0f99-418b-9769-3ab8f345909a
title: Realistic synthetic cable images and semantic segmentation masks dataset

description: The dataset contains the 25000 synthetic cable images and masks generated to train Deep Learning semantic segmentation models, as well as the weights of six segmentation models trained with them. This dataset is, related to the publication: Pablo Malvido Fresnillo, Wael M. Mohammed, Saigopal Vasudevan, Jose A. Perez Garcia, and Jose L. Martinez Lastra. "Generation of realistic synthetic cable images to train Deep Learning segmentation models." 2024.
DOI: 10.34740/kaggle/ds/3882219
title: Markovian C. elegans behavior across scales
DOI: 10.3886/e112894v1
title: Replication data for: Credit Supply and the Price of Housing

description: An exogenous expansion in mortgage credit has significant effects on house prices. This finding is established using US branching deregulations between 1994 and 2005 as instruments for credit. Credit increases for deregulated banks, but not in placebo samples. Such differential responses rule out demand-based explanations, and identify an exogenous credit supply shock. Because of geographic diversification, treated banks expand credit: housing demand increases, house prices rise, but to a lesser extent in areas with elastic housing supply, where the housing stock increases instead. In an instrumental variable sense, house prices are well explained by the credit expansion induced by deregulation. (JEL G21, G28, R21, R31)
DOI: 10.3886/icpsr22626.v8
title: India Human Development Survey (IHDS), 2005
title: Version 8

description: A Data Guide for this study is available as a web page and for download. The India Human Development Survey 2005 (IHDS) is a nationally representative, multi-topic survey of 41,554 households in 1,503 villages and 971 urban neighborhoods across India. Two one-hour interviews in each household covered topics concerning health, education, employment, economic status, marriage, fertility, gender relations, and social capital. Children aged 8-11 completed short reading, writing and arithmetic tests. Additional village, school, and medical facility interviews are also available.
description: ICPSR data undergo a confidentiality review and are altered when necessary to limit the risk of 
				disclosure. ICPSR also routinely creates ready-to-go data files along with setups in the major 
				statistical software formats as well as standard codebooks to accompany the data. In addition to 
				these procedures, ICPSR performed the following processing steps for this data collection:
			   		Performed consistency checks.; Created variable labels and/or value labels.; Standardized missing values.; Checked for undocumented or out-of-range codes..
description: Response Rates: 
					Response rates were calculated as 82 percent for the recontact sample, 98 percent for the new sample, and 92 percent for the total response rate.
description: Datasets: 
					
						DS0: Study-Level Files
						DS1: Individual
						DS2: Household
						DS3: Medical
						DS4: Non-Resident
						DS5: Primary School
						DS6: Birth History
						DS7: Village
						DS8: Crops
description: India Human Development Survey (IHDS) Series
description: record abstracts
description: coded on-site observation
description: cognitive assessment test
description: face-to-face interview
description: mixed mode
description: on-site questionnaire
description: Nationally representative sample of Indian households.
				   		Smallest Geographic Unit: state
description: Nationally representative, multi-topic survey of 41,554 households in 1,503 villages and 971 urban neighborhoods across India.
DOI: 10.5281/zenodo.11186874
title: Chromatin-based mechanisms of diversification of regulatory and pro-inflammatory states reveal a role for BACH2 in Th17-based autoimmunity

description: ATAC-seq of human Th17 cell subsets.
DOI: 10.5281/zenodo.3521639
title: BDPROTO 1.0

description: BDPROTO is a database of phonological inventories from ancient and reconstructed languages.
DOI: 10.5281/zenodo.7840179
title: Variability of Eddy Kinetic Energy in the Eurasian Basin of the Arctic Ocean inferred from a Model Simulation at 1-km Resolution (data)

description: Data for "Variability of Eddy Kinetic Energy in the Eurasian Basin of the Arctic Ocean inferred from a Model Simulation at 1-km Resolution"