cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.m9t12/10
title: Silverman_et_al_2012a_Annual_Survey_Report_for_2011

description: Reference S9. Silverman E, Leirness J, Saalfeld D, and Richkus K. 2012a. 2011 Atlantic coast wintering sea duck survey. Laurel, Maryland: U.S. Fish and Wildlife Service.
DOI: 10.5061/dryad.n28rf/1
title: Body Shape Data

description: Landmark coordinates for geometric morphometric analysis. Both raw data and data following procrustes fitting and body arching correction are included.
DOI: 10.5061/dryad.q96d7/6
title: fossils as tips addition

description: R script for performing simulation tests where fossils are treated as tip taxa and models are fitted to data using Maximum likelihood. For space and clarity, simulations under different models have been added to a single script and commented out, such that individual models can be uncommented and run as required. It should also be noted that this script was written to be used on a cluster and thus to be distributed to many nodes at a single time. Users without access to a cluster may wish to loop this script multiple times if attempting to replicate results, but should take care not to overwrite previous results.
DOI: 10.5061/dryad.r42qf/1
title: salmonids.mtDNA.timetree

description: Bayesian chronogram (NEXUS tree format) of salmonid cladogenesis
DOI: 10.5061/dryad.rr65n/19
title: Sequence data for Splitstree analysis of Heliconius erato from the 65 KB peak of association in the red pattern interval

description: The sequence data used for Splitstree analysis of H. erato from the 65KB region (515 to 580 KB) of highest association in the red pattern interval. The data excludes sites with &gt;20% missing data or that were invariant. The file includes sites that had variation only in heterozygotes as Splitstree analysis can take into account heterozygote information.
DOI: 10.5061/dryad.s5c8k/2
title: Ion Exchange Membranes

description: Estimates of nutrient availability from ion exchange membranes installed on June 28, 2011 and retrieved on August 9, 2011 in eight plots at each site. Two cation and two anion membranes were installed in each plot and extracted together.
DOI: 10.5061/dryad.s903c/10
title: Giese et al 2013_suppl_image_dung heap

description: image of a dung heap used for cooking and heating during winter
DOI: 10.5061/dryad.t1n04/11
title: data_humans_by_testing_day

description: Psychometric function fit data for each testing day of human subjects.
DOI: 10.5061/dryad.t1n04/3
title: raw_data_human

description: Raw behavioral data collected from eight human subjects.
DOI: 10.5061/dryad.t1n04/5
title: pooled_data_humans

description: Behavioral response data from humans, pooled across sessions. This is computed from raw_data_human.mat file.
DOI: 10.5061/dryad.t1n04/6
title: fit_data_pooled_monkeys

description: Psychometric function fit data for monkeys' behavioral responses.
DOI: 10.5061/dryad.t1n04/7
title: fit_data_pooled_humans

description: Psychometric function fit data of behavioral responses of human subjects.
DOI: 10.5061/dryad.t1n04/8
title: xyn_fig_2A

description: Behavioral response data from monkey B used for psychometric function fit shown in Figure 2A in the paper.
DOI: 10.5061/dryad.tm8k3/2
title: TreeSAAP_input_files

description: TreeSAAP input files
DOI: 10.5061/dryad.tm8k3/3
title: CODEML_-_input_files

description: CODEML input files
DOI: 10.5061/dryad.tm8k3/4
title: MrBayes_input_file

description: MrBayes input file
DOI: 10.5061/dryad.v56t9/1
title: rawFRdata

description: Functional responses of gammarid predators towards C. curvispinum
DOI: 10.5061/dryad.vb850/1
title: BeaulieuDonoghueFruit

description: The fruit character scoring matrix
DOI: 10.5061/dryad.0r7g4/1
title: DataBase

description: This file contains the genotypes (27 microsatellite loci) and infection status (Plasmodium relictum, lineage SGS1) of 789 individuals of blue tit (Cyanistes caeruleus) sampled in three populations from Central Spain
DOI: 10.5061/dryad.0sd30/2
title: Parrots and Cockatoos: Colour variability and associated variables

description: Variable names (see Methods for more details)Data collated from the Handbook of Australian, New Zealand and Antarctic Birdsanimal: species code used in the phylogenyav.col.var: average colour variability (sexes pooled)m.col.var: average colour variability (males)f.col.var: average colour variability (females)polymorphic: considered polymorphic in Galeotti et al. (2003)sex.dich: sexual dichromatism scoremove.score: mobility scorerange: number of occupied 1’ cells in The New Atlas of Australian Birdshabitats: habitat heterogeneity scorethreat: threat status, 1=endangered, 0=not endangereddiet.het: dietary heterogeneity
DOI: 10.5061/dryad.11609/1
title: 100 dated supertrees of European Tetrapoda

description: 100 dated supertrees of European Tetrapoda species in newick format. All trees are rooted and ultrametric.
DOI: 10.5061/dryad.11609/2
title: 100 dated phylogenetic trees of European Squamata and Testudinae

description: 100 dated phylogenetic trees of European Squamata and Testudinae species in newick format. All trees are rooted and ultrametric.
DOI: 10.5061/dryad.11609/3
title: 100 dated phylogenetic trees of European Birds

description: 100 dated phylogenetic trees of European Bird species in newick format. All trees are rooted and ultrametric.
DOI: 10.5061/dryad.1tv93/7
title: script-SIM

description: R script files for the simulations
DOI: 10.5061/dryad.23vp5/6
title: Putative_Autosoma_SSR

description: Contains the SSR information for all the putative autosomal transcripts.
DOI: 10.5061/dryad.23vp5/7
title: Putative_Z_SSR

description: Contains the SSR information for all the putative Z-linked transcripts.
DOI: 10.5061/dryad.2gd84/2
title: Appendix 2

description: Verbatim locality label information of specimens  examined, and museum repository codens used in this manuscript.
DOI: 10.5061/dryad.2sk59/1
title: phenotype

description: Phenotype data for 280 lines in the Nebraska Wheat Breeding Program measured in 2010 at nine testing sites.
DOI: 10.5061/dryad.2v68d/1
title: Data from Rahman et al.

description: These are phenotypic data collected for male guppies fed different diets to expose condition dependence in sexually selected traits.
DOI: 10.5061/dryad.304pm/1
title: Choice oviposition
DOI: 10.5061/dryad.304pm/2
title: No choice oviposition B
DOI: 10.5061/dryad.30932/2
title: Pmultistriata_EST
DOI: 10.5061/dryad.31nd3/1
title: House sparrow seasonal auditory filter and temporal resolution data

description: This is data collected on seasonal changes in house sparrow auditory filter shape and temporal resolution. The data was collected in Lafayette, Indiana from male and female house sparrows. Metadata in the spreadsheet provides information on column heading abbreviations. This spreadsheet was made in Microsoft Excel. Auditory filter shape and temporal resolution were determined from auditory evoked potentials (TDT platform) and custom scripts written for PRAAT and SAS 9.2. More details can be found in the associated text.
DOI: 10.5061/dryad.4s0mg/1
title: Data on male steroid hormone concentrations and geography of accompanying study sites, and their sources.

description: Baseline corticosterone and testosterone concentrations in male amphibians and reptiles and the geography of accompanying study sites. Abbreviations used are: Lat = latitude measured in degrees, Elev = elevation measured in meters, T = testosterone in ng/ml, B = baseline corticosterone in ng/ml, BS length = duration of the breeding season measured in months.
DOI: 10.5061/dryad.515sg/1
title: Grovenburg_PLOSONE__Data

description: Newborn fawn data collected in the field broken out by species, study area, capture date, date of mortality or censor, and age estimates using published hoof-growth equations.
DOI: 10.5061/dryad.5pd17/1
title: AllTigerSalamander
DOI: 10.5061/dryad.74b31/1
title: Cramp et al raw data

description: Microsoft Excel spreadsheet with multiple tabs containing metabolic rate and parasite infection data.
DOI: 10.5061/dryad.75g00/2
title: NPSResponseToHalbert_etal_TableS2_JHered_Apr2012

description: Estimates of F-statistics and the number of migrants between central and northern breeding herds based on DNA extracted from fecal samples collected from male and female Yellowstone bison in both herds during the breeding seasons of 2006 and 2008 (Gardipee 2007).
DOI: 10.5061/dryad.76dc8/14
title: Export Analysis Simulations

description: This Excel file shows how we predicted the proportion of settlers to have originated from Curlew Caye (focal site) to each of the six additional export sites. For each export site, we calculate the cumulative relative probability of dispersal to that site based on the approximated dispersal kernel and the distance to all reef patches within 35 km. We can then predict the proportion to have originated from Curlew, based on the distance between Curlew and each export site. Additional details are given in Excel comments within the file.
DOI: 10.5061/dryad.80d7p/2
title: ECM IB4neg t=0 expressed genes reps1-7

description: Data for non-IB4 expressing DRG neurons at t=0; these were sampled immediately after the selection protocol that removes the IB4-expressing neurons, leaving the IB4-negative neurons behind.  Only genes detected as being expressed are presented.Of 144 ECM genes on the arrays, 36 genes were expressed by both neuron populations.
DOI: 10.5061/dryad.b32s5/1
title: Data for QTL analysis of Ipomopsis

description: genotypes and phenotypes of parents and hybrids
DOI: 10.5061/dryad.c2124/1
title: Porcine_60K_Data_Wilkinsonetal2013.tar
DOI: 10.5061/dryad.c7f1f/3
title: Structure_parameter_file

description: Structure run parameters
DOI: 10.5061/dryad.f7m5t/1
title: Concatenated mitochondial gene alignment (Gblock)

description: Mitochondrial genes used in this study, Gblock data set. See Supplemental Table S2. ATP6, 1, 666; ATP8, 667, 747; Cox1, 748, 2274; Cox2, 2275, 2955; Cox3, 2956, 3738; CytB, 3739, 4869; ND1, 4870, 5793; ND2, 5794, 6651; ND3, 6652, 6999; ND4, 7000, 8307; ND4L, 8308, 8601; ND5, 8602, 10305; ND6, 10306, 10812.
DOI: 10.5061/dryad.fg7ps/1
title: Raw Data

description: This Excel file contains the data, both unstandardized and standardized, for the selection differentials, selection gradients, and other analyses conducted in our publication.
DOI: 10.5061/dryad.g5jj6/4
title: paradoxus_alignment

description: Sequence alignment (concatenated) and genomic coordinates for S. paradoxus isolates
DOI: 10.5061/dryad.h0228/5
title: DarwinTunes-medley-at-500-generations

description: A medley of audio loops selected manually from a particular point in the evolution of experimental population 1 (EP1).
DOI: 10.5061/dryad.h883s/1
title: final_raw_data

description: Data file used for meta-analyses
DOI: 10.5061/dryad.h883s/2
title: meta-analysis-script

description: R-script for full meta-analysis
DOI: 10.5061/dryad.h883s/3
title: meta-analysis-script-animals-only

description: R-script for gonochorous animal subset
DOI: 10.5061/dryad.hn45t/1
title: Deer Body Mass Data
DOI: 10.5061/dryad.j3r20/2
title: Female length data
DOI: 10.5061/dryad.j5g7m/1
title: Schlenke_EgglayPaperRawdata

description: This Excel file contains all the raw data associated with the paper (except for brain scan images), assembled in sheets by figure.
DOI: 10.5061/dryad.j7230/7
title: Comparison of number of significant Fgp between sexes at 3 distance classes

description: Data table for Fisher's exact test in JMP. FGP: Fgp values between plots. GGD: geographic distance between plots (km). GGD class: 1, short -distance class; 2, intermediate-distance class; 3 long-distance class. significantFGP: 0, not significant; 1, significant.
DOI: 10.5061/dryad.j7230/8
title: Mathematica programs to calculate Fgp and the related statistics and to perform simulation, input data and output
DOI: 10.5061/dryad.jf142/1
title: simulation_datasets

description: This dataset contains three datasets corresponding to the example, simI and simII in the following paper:Anhui Huang; Shizhong Xu; Xiaodong Cai, Empirical Bayesian Elastic Net for Multiple Quantitative Trait Locus Mapping. Heredity(2014) Accpeted.
DOI: 10.5061/dryad.jm453/10
title: amph_shl_dates_caecilians

description: Caecilian subtree for BioGeoBEARS analysis (Figure 1).
DOI: 10.5061/dryad.jm453/11
title: caecilian_DEC_M0_unconstrained_v1

description: Output for DEC model from caecilian subtree analysis.
DOI: 10.5061/dryad.jm453/3
title: amph_shl

description: NNI-optimized ML tree resulting from Amphibia_2_9 matrix, with SHL support values.
DOI: 10.5061/dryad.jm453/4
title: amph_shl_dates

description: Dated version of the NNI-optimized ML tree with SHL support values, used for biogeographic reconstructions.
DOI: 10.5061/dryad.jm453/5
title: amph_clade_areas

description: Data illustrated in Figure 1: clade names, clade ages, number of areas occupied, and number of species in clade.
DOI: 10.5061/dryad.jm453/6
title: amph_ecoregions

description: Taxonomic database listing 6576 species, their family, and regions of occurrence.
DOI: 10.5061/dryad.jm453/7
title: amph_shl_dates_trim.tre

description: MESQUITE-format NEXUS file containing the tree pruned to the 3126 species inhabiting one ecoregion, with Mk1 estimates of ancestral states (Appendix S5).
DOI: 10.5061/dryad.jm453/8
title: caecilian_ecoregions

description: Ecoregion data for BioGeoBEARS analysis of caecilian subtree.
DOI: 10.5061/dryad.jm453/9
title: caecilian_ecoregions

description: R Code for BioGeoBEARS run on caecilian subtree (Figure 1).
DOI: 10.5061/dryad.mk471/14
title: FinalOutput_Ovary

description: FinalOutput_Ovary.RData contains the results from the traditional scaled data set in ovarian cancer, including the results of the permutation-based procedure to compute p values and q values for the SAPSScores.
DOI: 10.5061/dryad.n28rf/2
title: Color Opponency Data

description: Color data as interpreted in a color opponency framework. Raw color data are provided along with normalized response values and a color opponency score for each sampling location on the body. These scores are averaged within sampling areas and form the data used in PCA analysis.
DOI: 10.5061/dryad.n28rf/3
title: MWS-LWS Data

description: Color data as interpreted using MWS and LWS as independent values. Raw data are given along with averages for each sampling area that were then used in subsequent PCA.
DOI: 10.5061/dryad.np517/1
title: 13_Barnett_PLOS1_data

description: Excel file containing data used for Barnett et al. PLOS ONE. DOI: 10.1371/journal.pone.0064487
DOI: 10.5061/dryad.p5v4g/1
title: Soil biota enhance agricultural sustainability

description: Data collected from a two year lysimeter experiment investigating the effects of different soil biological inoculation treatments on crop yield and nutrient contents and nutrient leaching losses. Data is shown for year 1 and 2 separately and also cumulatively for the whole duration of the experiment.
DOI: 10.5061/dryad.p88q8/12
title: fastPHASE2haplotypes

description: R script for converting fastPHASE output into a list of phased haplotypes with duplicated IDs
DOI: 10.5061/dryad.qb251/1
title: Supplementary material

description: This PDF file includes:Figures S1–S11Tables S1–S8
DOI: 10.5061/dryad.qb251/2
title: S2. Nucleotide alignments of 45 plastid genes in PHYLIP format.
DOI: 10.5061/dryad.qt2qb/1
title: Development time data

description: Development time data of Dendroctonus ponderosae lifestages at several constant temperatures
DOI: 10.5061/dryad.t1n04/12
title: data_humans_single_sess

description: Psychometric function fit data for each sitting of behavioral testing in humans.
DOI: 10.5061/dryad.t1n04/13
title: stat_data_for_fig_2_3_4

description: Spatial lag and slope data used for statistics associated with Figures 2,3 and 4
DOI: 10.5061/dryad.t1n04/14
title: stat_data_for_fig_5AB

description: Spatial lag and slope data need for statistics associated with Figure 5A and 5B.
DOI: 10.5061/dryad.t1n04/15
title: stat_data_for_fig_5C

description: Spatial lag and slope data for statistics associated with Figure 5C.
DOI: 10.5061/dryad.t1n04/16
title: stat_data_for_fig_2_3_4

description: Spatial lag and slope data for statistics associated with Figures 2, 3 and 4.
DOI: 10.5061/dryad.t1n04/17
title: stat_data_for_fig_5AB

description: Spatial lag and slope data for statistics associated with Figure 5A and 5B.
DOI: 10.5061/dryad.t1n04/18
title: stat_data_for_fig_5C

description: Spatial lag and slope data for statistics associated with Figure 5C.
DOI: 10.5061/dryad.t1n04/19
title: readme

description: pdf version of readme.txt. This file contains all the details needed to reproduce Figures and results of the paper.
DOI: 10.5061/dryad.vp634306/2
title: chloroplast

description: Concatenated alignment of single-nucleotide variants from the chloroplast in 29 taxa of genus Medicago (Fabaceae), collected by whole-genome resequencing and alignment to the M. truncatula reference genome.
DOI: 10.5061/dryad.vp634306/3
title: chromosome 1

description: Concatenated alignment of single-nucleotide variants from chromosome 1 in 29 taxa of genus Medicago (Fabaceae), collected by whole-genome resequencing and alignment to the M. truncatula reference genome.
DOI: 10.5061/dryad.vp634306/4
title: chromosome 2

description: Concatenated alignment of single-nucleotide variants from chromosome 2 in 29 taxa of genus Medicago (Fabaceae), collected by whole-genome resequencing and alignment to the M. truncatula reference genome.
DOI: 10.5061/dryad.vp634306/5
title: chromosome 3

description: Concatenated alignment of single-nucleotide variants from chromosome 3 in 29 taxa of genus Medicago (Fabaceae), collected by whole-genome resequencing and alignment to the M. truncatula reference genome.
DOI: 10.5061/dryad.08np6/1
title: Climate Data wo Costa Rican Species

description: Mean trait values, standard errors, and climate date for each of our source populations and study species
DOI: 10.5061/dryad.10rk4/1
title: data main experiment Antagonistic coevolution accelerates the evolution of reproductive isolation in Tribolium castaneum
DOI: 10.5061/dryad.11609/4
title: 100 dated phylogenetic trees of European Amphibians

description: 100 dated phylogenetic trees of European Amphibian species in newick format. All trees are rooted and ultrametric.
DOI: 10.5061/dryad.11609/5
title: 100 dated supertrees of European Mammals

description: 100 dated supertrees of European Mammal species in newick format. All trees are rooted and ultrametric.
DOI: 10.5061/dryad.17829/1
title: MilleronMEC121049
DOI: 10.5061/dryad.20r9k/16
title: canis_reads

description: Reads used to assemble Dog data
DOI: 10.5061/dryad.39q83/1
title: Mustelus_spp_genotypes.txt
DOI: 10.5061/dryad.39q83/2
title: Mustelus_spp_rawdata
DOI: 10.5061/dryad.4605c/3
title: Lab-reared 7 month old juvenile Perissodus microlepis fish

description: Mouth asymmetry (mouth bending angle), PC-1 scores (geometric and morphometric analysis) and body size (total length) of laboratory-reared 7 month old juvenile Perissodus microlepis fish
DOI: 10.5061/dryad.4f46b/2
title: genetic_data

description: Individual great tits with associated SNPS
DOI: 10.5061/dryad.5255n/4
title: Sanderspp_rag1_wouts_aln_dryadsub

description: Nuclear RAG1 DNA sequence alignment with all members of the genus Sander and outgroups
DOI: 10.5061/dryad.5h51p/1
title: Body size and aggressive attack latency data for Socorro isopods

description: Data collected in the field in May 2009 in Socorro, NM. Data archived in Excel, JMP 9.0.2 was used to create principle component measure of body size and transform data.
DOI: 10.5061/dryad.5kc45/1
title: Ant-Plant-Demography_2september2014

description: Data on the location, growth, and reproduction of ant-plants found in the lowland tropical forests of Reserve #1501 of the Biological Dynamics of Forest Fragments Project.
DOI: 10.5061/dryad.5kc45/2
title: ant-plant.plot.locations

description: Location of the 40 demographic plots in which a study on ant-plant demography was conducted.
DOI: 10.5061/dryad.7b470/1
title: Matrix_nt_nex

description: Matrix of nucleotide sequences of 41 mitochondrial genes for 60 streptophytes.
DOI: 10.5061/dryad.7b470/2
title: Matrix_aa

description: Matrix of amino acid translations of 41 mitochondrial genes for 60 streptophytes
DOI: 10.5061/dryad.7b470/3
title: Matrix_nt_degenerate

description: Matrix of degenerated nucleotide sequences of 41 mitochondrial genes for 60 streptophytes
DOI: 10.5061/dryad.7b470/4
title: stmtREV_model

description: Substitutional rate matrix of amino acid translations of mitochondrial genes of streptophytes
DOI: 10.5061/dryad.7b470/5
title: extractdata

description: Script used for extracting the data matrix from the SEQ-GEN output files
DOI: 10.5061/dryad.7b470/6
title: extract_likelihood_script

description: Script to extract likelihood scores from RAxML result
DOI: 10.5061/dryad.7b470/7
title: Extract-CDS

description: a Perl script for extracting mitochondrial coding genes from the GenBank file.
DOI: 10.5061/dryad.7b470/8
title: extractdata

description: Script used for extracting the data matrix from the SEQ-GEN output files
DOI: 10.5061/dryad.80d7p/4
title: ECM IB4neg t=24LN expressed genes reps1-6

description: Data for non-IB4 expressing DRG neurons at t=24LN; these were sampled after 24 hr culture on laminin-coated substrate.  Only genes detected as being expressed are presented.Of 144 ECM genes on the arrays, 36 genes were expressed by both neuron populations.
DOI: 10.5061/dryad.82th6/3
title: 18S-16S rDNA clones from bioaerosol sample G4 (S4F4)

description: 18S-16S rDNA clones from a maize pollen enriched bioaerosol sample collected with a pollen trap (PMF/Sigma 2, TIEM Technique, Germany) in a coexistence field trial in the Ghent area, Belgium. Sequences obtained from sample G4. Primers used: 515f 5’-GTGCCAGCMGCCGCGGTAA-3’ (M=A-C) 1391r 5’-GACGGGCGGTGWGTRCA-3’(W=A-T; R=A-G).
DOI: 10.5061/dryad.b1q2n/16
title: 120525_exp392a.csv

description: File: 120525_exp392a.csvFormat: text (comma separated values)Contents: Data obtained from the analysis of flow cytometry data files well.001 - well.096 and well.201 - well.202 using WEASEL 3.0.1. File also contains information about the identity of every sample. Data are used to produce figure 3b.
DOI: 10.5061/dryad.c5c1q/1
title: SpruceSSRAlleleData
DOI: 10.5061/dryad.c5c1q/2
title: SpruceSSRprimers
DOI: 10.5061/dryad.f058c/1
title: 16S_reference

description: 16S reference generated as consensus sequences from the Leiopelma hochstetteri 16S sequences available in GenBank.
DOI: 10.5061/dryad.f058c/10
title: Pop7

description: Standard Flowgram Format (sff) file that contains NGS reads for 16S and Cyt b amplicons from population-pool 7. Individuals that belong to population-pool 7 are listed in Table 1.
DOI: 10.5061/dryad.f058c/11
title: Pop8

description: Standard Flowgram Format (sff) file that contains NGS reads for 16S and Cyt b amplicons from population-pool 8. Individuals that belong to population-pool 8 are listed in Table 1.
DOI: 10.5061/dryad.f058c/3
title: Table1

description: Sample details of Leiopelma hochstetteri individuals used in the pooled samples next-generation sequencing (NGS) approach. For each sample species, sampling location, population number, sample number, Cyt b Genbank accession number, 16S Genbank accession number and geographical coordinates of the sampling location are provided.This table corresponds to a modified supplementary material that is available with the online version of the article Fouquet et al. 2010, Conservation Genetics, 11, 907-919  (doi:10.1007/s10592-009-9935-8).						Accession numbers in bold indicate unsuccessful PCR amplifications for the given locus and individual. Note that the sequences deposited in the Genbank under these accession numbers are sequences generated by Sanger sequencing in the study of Fouquet et al. 2010.
DOI: 10.5061/dryad.f058c/6
title: Pop3

description: Standard Flowgram Format (sff) file that contains NGS reads for 16S and Cyt b amplicons from population-pool 3. Individuals that belong to population-pool 3 are listed in Table 1.