cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17043/andren-2020-diatoms-1
title: Siliceous microfossil data (diatoms) from the western Gotland Basin, Baltic Sea, covering the last 1200 years
DOI: 10.17043/andren-2020
title: Siliceous microfossil data (diatoms) from the western Gotland Basin, Baltic Sea, covering the last 1200 years
DOI: 10.6084/m9.figshare.16761415
title: Data for seasonality in stable isotopes of Southampton Water fish community

description: Two csv files containing 1) all stable isotope analyses conducted during the project and 2) daily water physiochemistry data extracted from the xylem buoy collected between October 2015 and January 2017 in Southampton Water. <br>Stable isotope data includes bulk carbon, nitrogen and sulphur values from 453 individual fish, plus triplicates of monthly SPM filtrate and some basal resources collected July 2016. Samples were cleaned, freeze-dried and homogenised for analyses. No lipid extraction or carbonate removal was conducted on any of the samples. Water data contains daily means (from measurements taken every 15 minutes) of temperature, salinity, pH, turbidity (FNU) and chlorophyll concentration (fluorometric derivation in ug l^-1). <br>Further details can be found in the manuscript titled "Stable isotopes demonstrate seasonally stable benthic-pelagic coupling as newly-fixed nutrients are rapidly transferred through food chains in an estuarine fish community" published in the Journal of Fish Biology by Cobain et al. 2022, found at https://doi.org/10.1111/jfb.15005 Please cite this manuscript when using these data. <br>Note that a subset of these data are also published in Cobain et al., 2019 ICES Journal of Marine Science: https://doi.org/10.1093/icesjms/fsz045
DOI: 10.5281/zenodo.5938694
title: CSV files, R script and stimuli: writing process data of typed intransitive, monotransitive and ditransitive sentences by 90 healthy adults

description: Writing process data of 90 healthy elderly (50 - 90 years) were obtained. Each of them completed a typed sentence production task that consisted of 40 trials. Time on task, production time, and pause times before sentences, between words and within words were logged with a keystroke logging tool (ScriptLog). The data were used to examine the influences of normal ageing and verb transitivity on sentence production. The underlying aim was to provide a foundation for further research on sentence production in Alzheimer's disease (AD). This data set contains the CSV files that were used for the analyses and the corresponding R script. Note that the files contain the data before data reduction (still containing, e.g., participants that were eventually not included in the analyses, or sentences with errors); the R script includes the necessary code for data reduction. This data set also contains the stimuli that were used in the experiment (a subset of images from the Open Linguistic Picture Database; Paesen & Meulemans, 2020). The paper is currently under review. The data will be available as soon as it is accepted for publication.
description: This work was supported by the Research Foundation – Flanders [Aspirant 2016, reference number: 1173617N, PS ID: 3330].
DOI: 10.5281/zenodo.4661778
title: CSV files, R script and stimuli: writing process data of typed intransitive, monotransitive and ditransitive sentences by 90 healthy adults

description: Writing process data of 90 healthy elderly (50 - 90 years) were obtained. Each of them completed a typed sentence production task that consisted of 40 trials. Time on task, production time, and pause times before sentences, between words and within words were logged with a keystroke logging tool (ScriptLog). The data were used to examine the influences of normal ageing and verb transitivity on sentence production. The underlying aim was to provide a foundation for further research on sentence production in Alzheimer's disease (AD). This data set contains the CSV files that were used for the analyses and the corresponding R script. Note that the files contain the data before data reduction (still containing, e.g., participants that were eventually not included in the analyses, or sentences with errors); the R script includes the necessary code for data reduction. This data set also contains the stimuli that were used in the experiment (a subset of images from the Open Linguistic Picture Database; Paesen & Meulemans, 2020). The paper is currently under review. The data will be available as soon as it is accepted for publication.
description: This work was supported by the Research Foundation – Flanders [Aspirant 2016, reference number: 1173617N, PS ID: 3330].
DOI: 10.25318/1410039601-eng
title: Labour force characteristics by family structure, annual, unadjusted for seasonality

description: Labour force characteristic estimates by age group, sex, family age composition, province, and family type, last 5 years.
DOI: 10.25318/1410039601-fra
title: Caractéristiques de la population active selon la structure de la famille, données annuelles non désaisonnalisées

description: Estimations des caractéristiques de la population active selon le groupe d'âge, le sexe, la composition familiale par âge, la province, et le type de famille, 5 dernières années.
DOI: 10.25318/1410039701-eng
title: Labour force characteristics by family structure, monthly, unadjusted for seasonality

description: Labour force characteristic estimates by age group, sex, family age composition, province, and family type, last 5 months.
DOI: 10.6084/m9.figshare.16912639.v2
title: phototrophic biofilms oxygen slow/light

description: oxygen microprofiles measured under slow flow and light conditions.
DOI: 10.6084/m9.figshare.16912639.v1
title: phototrophic biofilms

description: oxygen microprofiles measured under slow flow and light conditions.
DOI: 10.6084/m9.figshare.16912630.v2
title: phototrophic biofilms - oxygen microprofiles fast/dark

description: Oxygen microprofiles taken under fast flow and dark conditions
DOI: 10.6084/m9.figshare.19103156.v1
title: DATA_BMC.xlsx

description: This study aimed to analyze the reliability of the tests included in the motor competence assessment (MCA) battery and compare the effects of the number of trials per test. Thirty female volleyball players (14.6±1.3 years of age) were tested. The participants performed two or three trials of each test. Intra-class correlation (ICC) was calculated, and a paired sample t-test analyzed the variations between trials (1st vs. 2nd vs. 3rd). Results revealed a significant difference between the first and the second trials for jumping sideways [t(29)=-4.108, p&lt;0.01], standing long jump [t(29)=-3.643, p&lt;0.01], and shuttle run [t(29)=-3.139, p&lt;0.01]. No significant result was registered in the shifting platforms, ball throwing and kicking between the first and second trials. Hence, any difference was recorded between the second and third trial. High ICC values were registered among the three repetitions of shuttle run, ball throwing, and ball kicking, while almost perfect values were recorded for the standing long jump. Nevertheless, there seems to be a learning effect between the first and the second repetition—no differences were registered only considering the two manipulative tests. In conclusion, except for jumping sideways, the MCA tests are reliable and only need to be performed two times instead of three.
DOI: 10.6084/m9.figshare.16912630.v1
title: phototrophic biofilms - oxygen microprofiles slow/dark

description: Oxygen microprofiles taken under fast flow and dark conditions
DOI: 10.6084/m9.figshare.16912636.v3
title: phototrophic biofilms oxygen microprofiles fast/light

description: oxygen microprofiles measured under fast flow and light conditions.
DOI: 10.6084/m9.figshare.16912636.v2
title: phototrophic biofilms oxygen microprofiles fast/light

description: oxygen microprofiles measured under fast flow and light conditions.
DOI: 10.6084/m9.figshare.14214182.v1
title: Using Object-Based Image Analysis to Detect Laughing Gull Nests - Project Data

description: This dataset collection is a repository of data used to complete the study "Using Object-Based Image Analysis to Detect Laughing Gull Nests". It includes two sets of imagery data, a Digital Elevation Model (DEM) layer derived from a LiDAR point cloud, a shapefile containing a Land Cover layer, an eCognition ruleset, and two shapefiles with manually digitized nest locations. This data can be used in the software eCogition to extract laughing gull nests as part of a semi-automated workflow. Instructions can be found in the included Word file.
DOI: 10.6084/m9.figshare.14602311.v3
title: Data from: Reef-building corals act as long-term sink for microplastic

description: Data will be uploaded after publication<br>
DOI: 10.6084/m9.figshare.14602311.v2
title: Data from: Reef-building corals act as long-term sink for microplastic

description: Data will be uploaded after publication<br>
DOI: 10.6084/m9.figshare.7834442.v9
title: Corticothalamic communication under analgesia, sedation and gradual ischemia: a multimodal model of controlled gradual cerebral ischemia in pig

description: Brain injuries and ensuing neurological abnormalities due to chronic hypoxia are among the most frequent causes and difficult to detect reliably. Prevention strategies require novel accurate methods. We showed that electrocorticogram's mutual information properties (ECoG) contain information about corticothalamic communication, which can be quantified without invasive insertion of the thalamic electrodes.Here we present the method and the data set to derive ECoG/EEG biomarkers of corticothalamic communication under normal, sedation and hypoxic/ischemic conditions.We hypothesize that the proposed biomarkers of corticothalamic communication derived from EEG alone will signal increased risk for or an imminent brain injury from short periods of data (less than 10 min).We present signal-analytical approaches to derive a signature of coupling between the ECoG and electrothalamogram (EThG) signals that were recorded under conditions of gradual ischemia in juvenile pigs.We hope this data set will contribute to development of new brain monitoring technologies to improve prevention of neurological injuries.All experiments have been approved by the responsible animal ethics committee.<br>BIDS version of the dataset can also be found on OpenNeuro: DOI:10.18112/openneuro.ds003380.v1.0.0<br>Publication: https://www.nature.com/articles/s41597-020-00781-y
DOI: 10.6084/m9.figshare.13340975.v2
title: Updated short variant, gene and transposable element predictions for P. nodorum isolates SN15, SN4, SN79, and SN2000

description: Gene, repeat, and transposable element predictions for the Parastagonospora nodorum isolates SN15, SN4, SN2000, and SN79.<br>Short variant predictions for the P. nodorum pangenome relative to SN15 are also included in VCF format. (combined.vcf.gz)<br>Because this study did not sequence these isolates and does not control the NCBI entry for them, we have opted to make them publically available here rather than through the usual NCBI/EBI route.<br>Transposable elements and repeats were predicted using the [PanTE](https://github.com/darcyabjones/pante) pipeline.Protein coding genes were predicted from softmasked genomes using the [panann pipeline](https://github.com/darcyabjones/panann).<br>Protein coding genes overlapping rRNA genes by more tha 50% of their length were excluded.<br>Protein coding genes with exons overlapping genome gaps (stretches of N &gt;= 100bp)were split into fragments, annotated in the GFF with the attribute `fragmented=true`.Note that we had some protein genes looked a bit dubious (lots of short exons).We attempted to mark these based on what support they have in the gff withthe attribute `low_confidence_prediction=true`. This attribute can be manuallyremoved if the gene looks fine to you.<br>The rRNA genes are predicted using RNAmmer v1.2, with some predictions comingfrom repeatmasker.The tRNA genes are predicted using tRNAScan-SE v2.0.3.<br><br>The SN15 annotations are an updated version of the ones published in Bertazzoni et al. (https://doi.org/10.1186/s12864-021-07699-8).Newly predicted genes were added as a "C" set (in addition to the existing A, and B sets) if they didn't overlap an existing annotation in the same strand by more than 20% of the length of the previous annotation annotation.All protein coding gene annotations have an attribute `confidence_set=` whichindicates the A, B (previous), or C (updated) gene predictions.<br>
DOI: 10.6084/m9.figshare.16915945.v2
title: Towards the de novo Design of HIV-1 Protease Inhibitors based on Natural Products

description: In the world, the acquired immunodeficiency syndrome (AIDS) caused by the human immunode-ficiency virus (HIV) continues to be a public health problem. In 2020, 680,000 people died from HIV-related causes, and 1.5 million people were infected. Antiretrovirals are only a way to control HIV, not a cure as such, so effective treatment must be developed to control AIDS. However, de-veloping a drug is not an easy task. The enormous amount of work and financial invested. For this reason, it is highly convenient to employ computer-aided drug design methods, which can help to generate and identify novel molecules. Using the de novo design, new novel molecules can be de-veloped from scratch using fragments as building-blocks. In this work we develop a virtual focused compound library of HIV-1 viral protease inhibitors from natural product fragments. Natural products are characterized by a large diversity of functional groups, a large number of sp3 atoms, and chiral centers; and the pseudo-natural product is a combination of natural products fragments that conserve the desired structural characteristics from different natural products.
DOI: 10.6084/m9.figshare.16917988.v1
title: robosoccer-1

description: dataset
DOI: 10.6084/m9.figshare.12671711.v1
title: Phoresy Records Appendix.xlsx

description: 254 literature records of phoresy from 1857 to 2021.
DOI: 10.6084/m9.figshare.16918465.v1
title: Grasselli&Airoldi_2021_Dryad.CSV

description: dataset formatted for PRIMER analysis
DOI: 10.34760/61f945bf5d8b7
title: Ledderhose disease: Radiotherapy or not? A randomised, multicentre, prospective, double blind phase III trial investigating the effect of radiotherapy on patients with Ledderhose disease

description: Data categories: Imaging data, Survey data, Physiological/Biochemical measurements
Number of donors	84
Sex:  Female, Male
Age: 19-75 Year
DOI: 10.6084/m9.figshare.14986971.v1
title: Influence of Dynamically Stable-unstable Flow on Seawater Intrusion and Submarine Groundwater Discharge over Tidal and Seasonal Cycles

description: These data contains experimental and simulated results related to our latest work—Fang et al., Influence of Dynamically Stable-unstable Flow on Seawater Intrusion and Submarine Groundwater Discharge over Tidal and Seasonal Cycles, under review.
DOI: 10.34683/sr2600
title: StoneRounds Case: SR2600
title: MCL

description: StoneRounds Case SR2600 was diagnosed with MCL likely caused by mutations in the gene: KIF11.
DOI: 10.6084/m9.figshare.16726030.v4
title: test materials

description: dataset
DOI: 10.17043/andersson-2019-delhi-1
title: Black carbon concentrations and carbon isotope signatures for Delhi, 2011
DOI: 10.17043/applegate-2013-ice-sheet-1
title: Results from a 100-member ensemble of Greenland Ice Sheet model runs, 125 ka BP to 3500 AD
DOI: 10.17043/avery-2020-varve-1
title: Deglacial varve chronology for Skåne-Småland, Sweden
DOI: 10.25318/1410039701-fra
title: Caractéristiques de la population active selon la structure de la famille, données mensuelles non désaisonnalisées

description: Estimations des caractéristiques de la population active selon le groupe d'âge, le sexe, la composition familiale par âge, la province, et le type de famille, 5 derniers mois.
DOI: 10.17043/avery-2020
title: Deglacial varve chronology for Skåne-Småland, Sweden
DOI: 10.6084/m9.figshare.14974050.v3
title: data & script

description: This contains 3 datasets in csv format (; separated) and an annotated R script for replicating the analyses presented in the paper "Sex reversal and performance in fitness-related traits during early life in agile frogs" by Veronika Bókony, Nikolett Ujhegyi, Zsanett Mikó, Réka Erös, Attila Hettyey, Nóra Vili, Zoltán Gál, Orsolya Ivett Hoffmann, and Edina Nemesházi. See the included readme text file for further details.
DOI: 10.17043/bikkina-2016-carbon-india-1
title: Dual carbon isotope (Δ¹⁴C and δ¹³C) data for Hisar and Manora Peak, northern India
DOI: 10.17043/borgstrom-2017-geomorphology-1
title: Geomorphology and exposure datings in west-central Sweden
DOI: 10.6084/m9.figshare.14974050.v2
title: data & script

description: This contains 3 datasets in csv format (; separated) and an annotated R script for replicating the analyses presented in the paper "Sex reversal and performance in fitness-related traits during early life in agile frogs" by Veronika Bókony, Nikolett Ujhegyi, Zsanett Mikó, Réka Erös, Attila Hettyey, Nóra Vili, Zoltán Gál, Orsolya Ivett Hoffmann, and Edina Nemesházi. See the included readme text file for further details.
DOI: 10.17043/broder-2016-organic-matter-1
title: Centennial-scale sediment records of organic matter supply and degradation status from the East Siberian Sea
DOI: 10.17043/brunnberg-2012-varve-1
title: Clay-varve data for the Younger Dryas and Preboreal in the Middle Swedish Ice Marginal Zone
DOI: 10.17043/budhavant-2019-absorption-1
title: Enhanced light-absorption of black carbon in rainwater compared with aerosols over the northern Indian Ocean
DOI: 10.6084/m9.figshare.16610488.v2
title: IrO2/RuO2 training set and complexions

description: Bootstrapping training set and final complexions for IrO2 and RuO2 surfaces as applied in respectively obtained from an iterative global optimization.<br>Reference method is Quantum Espresso.Machine Learning done via Gaussian Approximation Potential.For more details, see the respective publication by Jakob Timmermann and Yonghyuk Lee
DOI: 10.17043/budhavant-2019
title: Enhanced light-absorption of black carbon in rainwater compared with aerosols over the northern Indian Ocean
DOI: 10.17043/bulatovic-2020-aitken-1
title: Data from a modelling study on the importance of Aitken mode particles for cloud sustenance in the high Arctic
DOI: 10.17043/bulatovic-2020
title: Data from a modelling study on the importance of Aitken mode particles for cloud sustenance in the high Arctic
DOI: 10.17043/burgos-2020-aerosol-esm-1
title: Aerosol optical properties from ten earth system models for the year 2010
DOI: 10.17043/burgos-2020-esm
title: Aerosol optical properties from ten earth system models for the year 2010
DOI: 10.17043/burgos-2020-aerosol-esm-2
title: Aerosol optical properties from ten earth system models for the year 2010
DOI: 10.6084/m9.figshare.3761562.v2033
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.17043/burgos-2020-esm-2
title: Aerosol optical properties from ten earth system models for the year 2010
DOI: 10.6084/m9.figshare.3761562.v2032
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.17043/burgos-2020-aerosol-scattering-1
title: Aerosol light scattering coefficients and scattering enhancement factors at 26 globally distributed stations 1998⁠ – ⁠2017
DOI: 10.17043/burgos-2020
title: Aerosol light scattering coefficients and scattering enhancement factors at 26 globally distributed stations 1998⁠ – ⁠2017
DOI: 10.17043/campeau-2020-mackenzie-1
title: Water chemistry and geospatial characteristics of different sub-catchments in the Mackenzie River basin, Canada
DOI: 10.17043/campeau-2020
title: Water chemistry and geospatial characteristics of different sub-catchments in the Mackenzie River basin, Canada
DOI: 10.6084/m9.figshare.14401184.v2
title: R objects for all references

description: The rda files for all the references for easy input into R. Each file contains the mRNA and DNAm references for a tissue.
DOI: 10.17043/campeau-2020-mackenzie-2
title: Water chemistry and geospatial characteristics of different sub-catchments in the Mackenzie River basin, Canada
DOI: 10.6084/m9.figshare.19103156.v2
title: DATA_BMC.xlsx

description: This study aimed to analyze the reliability of the tests included in the motor competence assessment (MCA) battery and compare the effects of the number of trials per test. Thirty female volleyball players (14.6±1.3 years of age) were tested. The participants performed two or three trials of each test. Intra-class correlation (ICC) was calculated, and a paired sample t-test analyzed the variations between trials (1st vs. 2nd vs. 3rd). Results revealed a significant difference between the first and the second trials for jumping sideways [t(29)=-4.108, p&lt;0.01], standing long jump [t(29)=-3.643, p&lt;0.01], and shuttle run [t(29)=-3.139, p&lt;0.01]. No significant result was registered in the shifting platforms, ball throwing and kicking between the first and second trials. Hence, any difference was recorded between the second and third trial. High ICC values were registered among the three repetitions of shuttle run, ball throwing, and ball kicking, while almost perfect values were recorded for the standing long jump. Nevertheless, there seems to be a learning effect between the first and the second repetition—no differences were registered only considering the two manipulative tests. In conclusion, except for jumping sideways, the MCA tests are reliable and only need to be performed two times instead of three.
DOI: 10.17043/campeau-2020-2
title: Water chemistry and geospatial characteristics of different sub-catchments in the Mackenzie River basin, Canada
DOI: 10.17043/cascade-gridded-1
title: The Circum-Arctic Sediment Carbon Database — Gridded carbon, nitrogen and isotope data in surface sediments of the Arctic Ocean
DOI: 10.17043/cascade-grid
title: The Circum-Arctic Sediment Carbon Database — Gridded carbon, nitrogen and isotope data in surface sediments of the Arctic Ocean
DOI: 10.6084/m9.figshare.14399465.v1
title: mRNA and DNAm references for colon

description: The data contains a 1124-marker expression reference and a 127-marker DNAm reference for Colon, which can be used to estimate cell type fractions of enteroendocrine cells, enterocytes, goblet cells, immnue cells, paneth-like cells and progenitor-like cells in Colon tissue with EpiSCORE framework.<br>Colon_Expref.csvA scRNAseq expression reference for Colon. Each row is a marker gene (in gene symbol) and each column is a cell type. For each marker gene, the value of the reference matrix is the median expression level for each type of cells in scRNAseq data.<br>Colon_Mref.csvA DNAm reference for Colon. Each row is a marker gene (in entrezID) and each column is a cell type. The last column is the weight for each marker. The value of the matrix is the imputed DNAm level from expression reference.
DOI: 10.17043/cascade-gridded-2
title: The Circum-Arctic Sediment Carbon Database — Gridded carbon, nitrogen and isotope data in surface sediments of the Arctic Ocean
DOI: 10.17043/cascade-grid-2
title: The Circum-Arctic Sediment Carbon Database — Gridded carbon, nitrogen and isotope data in surface sediments of the Arctic Ocean
DOI: 10.6084/m9.figshare.16826122.v1
title: captures

description: Camera trap captures in format for REM
DOI: 10.17043/cascade-sediment-cores-1
title: The Circum-Arctic Sediment Carbon Database — Carbon, nitrogen and isotopes in sediment cores of the Arctic Ocean
DOI: 10.17043/cascade-cores
title: The Circum-Arctic Sediment Carbon Database — Carbon, nitrogen and isotopes in sediment cores of the Arctic Ocean
DOI: 10.17043/cascade-sediment-cores-2
title: The Circum-Arctic Sediment Carbon Database — Carbon, nitrogen and isotopes in sediment cores of the Arctic Ocean