cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24311371.v1
title: Data Repository for Combining Activity and Grimace Scores Reflects Perinatal Stability in Infants &lt;32 Weeks Gestational Age

description: Background: Over 95% of infants less than 32 weeks gestational age - very preterm infants (VPTIs) - require cardiorespiratory support at birth. Clinical condition at birth is assessed by the Apgar score, but the precision and accuracy of activity and grimace has not been evaluated in VPTIs. We hypothesised activity and grimace could predict the level of cardiorespiratory support required for stabilisation. Methods: Two hundred twenty-nine videos of VPTI resuscitations at Monash Children’s Hospital and The Royal Women’s Hospital, Melbourne were evaluated. Activity and grimace were scored (0, 1, or 2) by seven consultant neonatologists, with inter-rater reliability assessed. Activity and grimace were correlated with the maximum level of cardiorespiratory support required for stabilisation. Results: Kendall’s Coefficient of Concordance (W) showed strong interobserver agreement for activity (W =0.644, p &lt;0.001) and grimace (W =0.722, p &lt;0.001). Neither activity nor grimace independently predicted the level of cardiorespiratory support required. Combining activity and grimace showed non-vigorous infants (combined score &lt;2) received more cardiorespiratory support than vigorous (combined score ≥2). Conclusion: Scoring of activity and grimace was consistent between clinicians. Independently, activity and grimace did not correlate with perinatal stabilisation. Combined scoring showed non-vigorous infants had greater resuscitation requirements.
DOI: 10.6084/m9.figshare.28621199.v1
title: Thermal deformation of four minerals and five rock types at cryogenic temperatures, using micro-digital image correlation (micro-DIC) between 20°C and -190°C.

description: This is the micro-DIC data set for the paper “Thermal Deformation Behaviors of Minerals and Rocks from Ambient to Cryogenic Conditions: A High-Resolution <i>In-Situ</i> Micro-DIC Study”
DOI: 10.6084/m9.figshare.5182711.v1
title: Supplementary Material for: Global Application of the Assessment of Communication Skills of Paediatric Endocrinology Fellows in the Management of Differences in Sex Development Using the ESPE E-Learning.Org Portal

description: <b><i>Background:</i></b> Information sharing in chronic conditions such as disorders of/differences in sex development (DSD) is essential for a comprehensive understanding by parents and patients. We report on a qualitative analysis of communication skills of fellows undergoing training in paediatric endocrinology. Guidelines are created for the assessment of communication between health professionals and individuals with DSD and their parents. <b><i>Methods:</i></b> Paediatric endocrinology fellows worldwide were invited to study two interactive online cases (www.espe-elearning.org) and to describe a best practice communication with (i) the parents of a newborn with congenital adrenal hyperplasia and (ii) a young woman with 46,XY gonadal dysgenesis. The replies were analysed regarding completeness, quality, and evidence of empathy. Guidelines for structured assessment of responses were developed by 22 senior paediatric endocrinologists worldwide who assessed 10 selected replies. Consensus of assessors was established and the evaluation guidelines were created. <b><i>Results:</i></b> The replies of the fellows showed considerable variation in completeness, quality of wording, and evidence of empathy. Many relevant aspects of competent clinical communication were not mentioned; 15% (case 1) and 17% (case 2) of the replies were considered poor/insufficient. There was also marked variation between 17 senior experts in the application of the guidelines to assess communication skills. The guidelines were then adjusted to a 3-level assessment with empathy as a separate key item to better reflect the qualitative differences in the replies and for simplicity of use by evaluators. <b><i>Conclusions:</i></b> E-learning can play an important role in assessing communication skills. A practical tool is provided to assess how information is shared with patients with DSD and their families and should be refined by all stakeholders, notably interdisciplinary health professionals and patient representatives.
DOI: 10.6084/m9.figshare.9992216.v3
title: Table1_SM.xlsx

description: Table 1 of Supplementary Material
DOI: 10.17632/87dbcjntsk
title: Insight into the complex interaction between vaginal microbiome, metabolome, and host gene expression in cervical cancer progression

description: Multi-omics analysis for the healthy (Z group), abortion (AB group), HPV infection (HP group), and cervical cancer group (CC group), qRT-PCR and cytotoxicity assays were used for validation. Raw data from qRT-PCR are provided here.
DOI: 10.17632/frfvfyf3sz
title: Smart PLS Training

description: This file for student training
DOI: 10.17632/fscsfpk7kp
title: Impact of augmented reality

description: The data we have analyzed pertains to a study investigating the impact of augmented reality (AR) on the acquisition of minimally invasive surgical skills among podiatry students. The study involved 80 students and compared the effectiveness of AR versus traditional educational methods (such as PowerPoint and video tutorials) in teaching surgical techniques for hallux abductus valgus (HAV) and bunionette surgeries. The data collected included students' perceptions evaluated through a validated questionnaire (SAEMAS), measuring aspects such as motivation, content retention, visual comprehension, and active learning.
DOI: 10.6084/m9.figshare.28389230.v6
title: Data&Proof

description: The system parameters and the FR parameters setting for numerical experiments in the paper 'Flexible Resource Value Considering Compulsory Power Supply for Critical Loads During Extreme Weather'.
DOI: 10.6084/m9.figshare.28752449.v1
title: Analysis

description: Snow crab (<i>Chionoecetes opilio</i>) is considered an invasive species in the Barents Sea, with the first observations dating back to 1996. The Norwegian commercial snow crab fishery started in 2012. In this fishery conical baited pots are adopted, similar to fisheries in other areas that target snow crabs. Over the last decade, different management measures have been implemented to ensure sustainability in this relatively new fishery. One central challenge is pot loss during deployment caused by challenging weather and operational conditions. Lost snow crab pots exhibit considerable potential for the continuous capture of crabs, so-called ghost fishing, which has been documented during lost gear retrieval and experimental trials. This study accounted for different snow crab pot loss scenarios and associated economic implications. The results show that given the substantial number of pots on snow crab fishing vessels, even small variations in pot loss rates (pot losses ranging from 0.5–3.0%) could result in considerable differences in ghost fishing amounts and the associated environmental and economic effects. The estimated amounts of ghost fishing in this study ranged from 11.5 to nearly 70 tonnes of ghost-fished crabs over a 3-year period, assuming 0.5–3.0% pot loss scenarios, resulting in significant differences in the amount of ghost-fished snow crabs and the value of the ghost fishing catch. These results highlight the importance of incentives and technical measures that can reduce pot losses and the associated ghost fishing time.
DOI: 10.17632/vmy42hywwx
title: Natural barriers facing female cyclists and how to overcome them: a cross national examination of bikesharing schemes

description: Data and software for examining the role of natural barriers in over 200 million trips from bikesharing data from 10 cities.
The data is integrated with weather data, gradient data, and sunrise/sunset data and examined by gender (male / female self-reported) to check for significant differences between gender using Generalized Additive Models (GAMs).
DOI: 10.17632/w5jth5g9wd
title: Dogs, demonstrators and detours: does the shape of the obstacle matter?

description: The file contains the raw data and explanatory legend for the experiment which was published in Animal Behaviour, under the title "Dogs, demonstrators and detours: does the shape of the obstacle matter?".
DOI: 10.6084/m9.figshare.12326405.v1
title: S2b File.pdf

description: Clustal W genetic phylogenetic analysis.<b></b>
DOI: 10.6084/m9.figshare.1270622.v1
title: Demographic and clinical characteristics

description: Demographic and clinical characteristics
DOI: 10.6084/m9.figshare.14132348.v1
title: Edge effects along powerline corridors

description: This dataset relates to vegetation sampling conducted along three powerline corridors in southeastern Ohio, USA.
DOI: 10.6084/m9.figshare.14330759.v1
title: Data and Code for Rovinsky et al., 2021

description: Data and code needed to perform the analyses in Rovinsky et al., 2021 "Functional ecological convergence between the thylacine and small prey-focused canids". Data includes a ReadMe file. You should start there!
DOI: 10.6084/m9.figshare.23788104.v1
title: Solar wind implantation

description: This item includes the figures and original data files for the JGR-planet manuscript [2023JE008024]. There are 15 data files in all that are in .dat and .plt format, which are obtained by the global MHD simulations and can be opened and visualized by Tecplot software. In particular, the first data file (3D_LMM.plt) is related to the panel of Figure 1a, and the second and third data files are assocaited with the panels of Figure 1b-1f. The 4th data file is used for Figure 2, and the 6th to the 12th data files are associated with Figure 3. The 13th and 14the data files are related to Figure 4, and the 15the data file is used for Figure 5.
DOI: 10.6084/m9.figshare.25837762.v1
title: Chromosome-level genome assembly and annotation of Champsocephalus gunnari.

description: <b>Genome assembly</b> The Oxford Nanopore long reads obtained from DNA sequencing were assembled using NextDenovo (v.2.4.0) (https://github.com/Nextomics/NextDenovo) and polished using NextPolish (v.1.3.1) with Illumina short reads generated from muscle tissue. After processing with Purge Haplotigs, haploid assembly were scaffolded using Hi-C.<b>Genome annotation</b> Protein-coding genes in the assembled genome were predicted using the BRAKER3 annotation pipeline (v.3.0.8) and The functional annotation of protein-coding gene was performed using EggNOG mapper (v2.1.12)
DOI: 10.6084/m9.figshare.5705167.v1
title: Network of scientific collaborations between New Zealand institutions based on Scopus publications from 2010 to 2015

description: This dataset contains major outputs of a study on collaboration links between all New Zealand universities based on Scopus publications within 2010-2015. For more details about the study, one may refer to<br>Samin Aref, David Friggens, and Shaun Hendy. 2018. Analysing Scientific Collaborations of New Zealand Institutions using Scopus Bibliometric Data. In <i>Proceedings of ACSW 2018: Australasian Computer Science Week 2018, January 29-February 2, 2018, Brisbane, QLD, Australia</i>, 10 pages. https://doi.org/10.1145/3167918.3167920<br>The number of collaboration records of 15 New Zealand universities and crown research institutes (government-funded research centres) are categorised based on the type of collaborator (business enterprise, government, higher education, and private not-for-profit) and the subject of publication venue and provided as a CSV file.<br><br>New Zealand scientific collaboration network is provided in 3 formats: .gephi, .graphml, and an edge list in .csv format<br><br>7 Induced subgraphs of the network are also provided. Each induced subgraph (ego network) represents the collaborators network of a crown research institute. Two formats are provided: .gephi and .graphml.<br>Please cite the research paper (doi: 10.1145/3167918.3167920) as well as this Figshare dataset (doi 10.6084/m9.figshare.5705167) when using the data.<br>ACKNOWLEDGMENTSAndrew Marriott and Sam Holmes at Ministry of Business Innovation & Employment (MBIE) performed much of the work classifying New Zealand institutions. The first author would like to thank Peter Ellis and Franz Smith for their support.<br>
DOI: 10.17632/cdkt7xmzhp
title: Data for: Tolerance of Fifteen Hydroponic Ornamental Plant Species to Formaldehyde Stress

description: Pictures and statistics of the research.
DOI: 10.17632/wwrd59md8n
title: An IoT-Integrated Portable Device for Sustainable Hydroponic Cultivation

description: A novel device named SmartHydroKit is proposed and implemented in three different hydroponic setups while cultivating different herbaceous medicinal plants. The novelty of the SmartHydroKit lies in its portable, user-friendly, cost-effective, scalable, and energy-efficient design specifically tailored for real-time monitoring of hydroponic cultivation. Unlike traditional soil-based sensors, it continuously monitors key agronomic variables (temperature, humidity, pH, EC, and TDS) using an integrated ESP 32 microcontroller, ensuring optimized resource use, reduced labor, and sustainable plant growth. This device monitors the environmental and agronomic conditions in any hydroponic system, regardless of crop type. Its portability is ensured by a 3-series battery and battery management system (BMS) which enables its usability even in case of power outages and remote locations. The built-in Wi-Fi and Bluetooth connectivity of the device increases its versatility in multiple IoT devices. The kit integrates pH, EC, TDS, DHT11 temperature, and humidity sensors with an ESP32 microcontroller and a ThingSpeak cloud platform for the real-time monitoring of the hydroponic environment. The SmartHydroKit updates all the real-time sensor data in the CSV sheet after every 30 seconds. This data can be accessed and monitored through the ThingSpeak IoT platform when the user logs in to the platform through any end device. The entire setup is wireless and simple to use, contributing to more scalable hydroponic cultivation practices.

(The design files will include the figures of the manuscript)
DOI: 10.23645/epacomptox.6253679.v2
title: Archived Distributed Structure-Searchable Toxicity (DSSTox) Data

description: The most updated EPA DSSTox data files are available https://doi.org/10.23645/epacomptox.5588566 . EPA’s Distributed Structure-Searchable Toxicity (DSSTox) database contains curated chemical substances mapped to data including chemical identifiers (i.e., chemical synonyms, systematic names, CAS Registry Numbers and others) and, where appropriate, chemical structure representations. The goal for DSSTox is to accurately represent chemical substances, their structures and identifiers, as well as relevant chemical lists which are important to the environmental research and regulatory community.Science Inventory, CCTE products: https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25
DOI: 10.6084/m9.figshare.13028255.v3
title: COMBINE: a Coalesced Mammal Database of Intrinsic and extrinsic traits

description: COMBINE is a taxonomically integrated database of mammal traits obtained from published sources, in which we maximized trait number and coverage without compromising data quality. COMBINE contains information on 54 traits for 6,234 extant and recently extinct mammal species, including information on morphology, reproduction, diet, biogeography, life-habit, phenology, behavior, home range and density. Additionally, we calculated other relevant traits such as habitat and altitudinal breadths for all species and dispersal for terrestrial non-volant species. All data are compatible with the taxonomies of the IUCN Red List v. 2020-2 and PHYLACINE v. 1.2. Missing data were adequately flagged and imputed for non-biogeographical traits with 20% or more data available. We obtained full data sets for 21 traits such as female maturity, litter size, maximum longevity, trophic level and dispersal, providing imputation performance statistics for all. This data set will be especially useful for those interested in including species’ traits in large-scale ecological and conservation analyses.
DOI: 10.6084/m9.figshare.1489739.v1
title: Multiple sequence alignment of HBV complete genome sequences performed by using ClustalW in MEGA software version 6.

description: Multiple sequence alignment of HBV complete genome sequences performed by using ClustalW in MEGA software version 6.
DOI: 10.6084/m9.figshare.26401111.v1
title: LOMS.cz : database of Judd-Ofelt parameters

description: A dataset of Judd-Ofelt parameters of RE-doped (RE=Er, Dy, Eu, Gd, Ho, Nd, Pm, Pr, Sm, Tb and Tm) for various host materials and compositions.
DOI: 10.6084/m9.figshare.29050040.v1
title: Data for "Magnesium and silicon isotopic evidence revealing a non-chondritic inner solar system origin for the ureilite parent body"

description: Table S1: Bulk major element compositions (wt. %) of ureilites analyzed using ICP-OES in this study.Table S2: Si isotope compositions of standards and ureilites analyzed in this study.Table S3: Ma isotope compositions of standards and ureilites analyzed in this study (Double spike).Table S4: Summary of Si and Mg isotope compositions of different types of meteorites reported in the literature since2008.
DOI: 10.17632/bcn2djd6jw
title: Iq-solow data

description: his study leverages an assortment of data. The working-age population (ages 15-64)
growth rate was obtained from the World Bank Open Data databases . For the
year 2014, the real GDP (Y) ,the working-age population (L) and the depreciation
rate δ were extracted from the Penn World Table 9.1 . The growth rate of tech-
nological progress g is assumed to be constant and equal to 1%,it corresponds to the
long-term growth rate of total factor productivity in the United States.Concurrently,
the average share of real investment (inclusive of government investment) was calculated based on PWT 9.1 data. The Regulatory
Quality Index, Corruption Index, Voice and Accountability Index, Political Stabili-
ty/No Violence Index, Government Effectiveness Index, and Rule of Law Index were
obtained from the Worldwide Governance Indicators (WGI) dataset, The biennial
frequency of the Worldwide Governance Indicators from 1996 to 2002 is unlikely to
significantly impact the study’s empirics. Governance indicators are generally stable
over short periods, especially in this case given the chosen samples, and the years with
biennial data form a small portion of the overall time frame of 1996 to 2014. Once
the dataset transitions to an annual frequency post-2002, this will further dilute any
potential influence of the initial biennial data.
DOI: 10.6084/m9.figshare.14211287.v1
title: mBio_Wang_etal_2020_supplement_TableS14

description: <b>Supplemental Table S14. Gene lists for <i>C. albicans </i>co-expression modules.</b>
DOI: 10.6084/m9.figshare.14258357.v3
title: Norfish 01 Flemish Herring Fisheries 1386–1790

description: From medieval times and into the early modern period, the port of Oostende (Ostend) was a primary fishing port on the Flemish coast, second only to Nieuwport (Nieuwpoort) in Flanders. The Flemish coastal fisheries produced an industry that was highly developed and influential, reaching markets of the Hanseatic League along the Baltic coast, England and the Mediterranean. This “Golden Age” of Flemish Fisheries Oostende’s fishing effort was interrupted by natural effects such as the silting of its harbour, and numerous human affects such as warfare and political interference. However, due to ingenuity and fortitude of its fishermen, and the application of revolutionary modern techniques for treating caught fish, the industry developed apace. The 15th and 16th Centuries are regarded as the “Bloom period” of the Flemish herring fisheries.
DOI: 10.6084/m9.figshare.19144801.v1
title: Additional file 1 of Genomewide transcriptional response of Escherichia coli O157:H7 to norepinephrine

description: Additional file 1: Table S1. List of 5509 genes with reads mapped to the reference genome in response to growth of E. coli O157:H7 strain NADC 6564 in response to norepinephrine.
DOI: 10.6084/m9.figshare.22132958.v1
title: Kuppe Visium Human Heart 2022 Control

description: Dataset published by Kuppe et al. 2022, which contains data from human cardiac remodelling after myocardial infarction using single-cell gene expression, chromatin accessibility and spatial transcriptomic profiling of multiple physiological zones in myocardium from patients with myocardial infarction and controls. <br> The dataset available under this link contains the spatial transcriptomics part from all control patients. <strong>Citation</strong> Kuppe, C., Ramirez Flores, R.O., Li, Z. <em>et al.</em> Spatial multi-omic map of human myocardial infarction. <em>Nature</em> <strong>608</strong>, 766–777 (2022). https://doi.org/10.1038/s41586-022-05060-x <strong>Manuscript link</strong> https://www.nature.com/articles/s41586-022-05060-x <strong>Original data link</strong> https://zenodo.org/record/6580069#.Y_SQXuzMJhE
DOI: 10.6084/m9.figshare.25988989.v1
title: Germline missense MSH2 VUS - 5

description: Molecular dynamics simulation of the VUS based on the ClinVar database, the simulation is up to 100 ns.
DOI: 10.6084/m9.figshare.28329968.v1
title: Data of "<b>Altitude correlates with dorsal −but not ventral− scale number and dimension in a lacertid lizard</b>"

description: The primary function of the keratinised skin of squamates is modulating heat load, reducing water loss rates and protecting from abrasion. Furthermore, reptilian scale size and shape variation have also been observed depending on the habitat and associated environmental conditions. However, how climate can modulate intraspecific scale characteristics of reptile species in temperate regions is still a subject of debate. Here, we investigate the potential correlation between climate and lizard scalation for a European lacertid lizard. From 221 museum collection specimens of <i>Podarcis muralis</i>, we recorded body measurements and sex information and counted the number and size of dorsal scales and the number of ventral scales per individual. We obtained each specimens’ capture location information from which we extracted environmental data like temperature, precipitation, humidity, wind speed, solar radiation and altitude. We found that individuals that inhabited higher elevations tended to have fewer and larger dorsal scales than those from lowlands, as a potential adaptation to decrease water loss in arid and windy environments. We did not find a correlation between the number of ventral scales and environmental conditions, except for wind speed. This study uncovers an intraspecific adaptive mechanism in an environment gradient that is key to understanding species' potential adaptation to future climatic conditions.