cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7879985.v2
title: Data and Code supporting manuscript from Quantifying the consequences of measles-induced immune modulation for whooping cough epidemiology.

description: Measles, an acute viral disease, continues to be an important cause of childhood mortality worldwide. Infection with the measles virus is thought to be associated with a transient but profound period of immune suppression. Recently, it has been claimed that measles-induced immune manipulation lasts for about 30 months and results in increased susceptibility to other co-circulating infectious diseases and more severe disease outcomes upon infection. We tested this hypothesis using model-based inference applied to parallel historical records of measles and whooping cough mortality and morbidity. Specifically, we used maximum likelihood to fit a mechanistic transmission model to incidence data from three different eras, spanning mortality records from 1904 to 1912 and 1922 to 1932 and morbidity records from 1946 to 1956. Our aim was to quantify the timing, severity and pathogenesis impacts of measles-induced immune modulation and their consequences for whooping cough epidemiology across a temporal gradient of measles transmission. We identified an increase in susceptibility to whooping cough following recent measles infection by approximately 85-, 10- and 36-fold for the three eras, respectively, although the duration of this effect was variable. Overall, while the immune impacts of measles may be strong and clearly evident at the individual level, their epidemiological signature in these data appears both modest and inconsistent.This article is part of the theme issue ‘Detection, forecasting and control of infectious disease epidemics: modelling outbreaks in humans, animals and plants Part 1’.
DOI: 10.6084/m9.figshare.7991867
title: Benevento_etal_dataset_ESM from Patterns of mammalian jaw ecomorphological disparity during the Mesozoic/Cenozoic transition.

description: A .cvs file including species names, specimen numbers, locality information, and PCA scores for each taxa included in this study
DOI: 10.6084/m9.figshare.7879985.v1
title: Data and Code supporting manuscript from Quantifying the consequences of measles-induced immune modulation for whooping cough epidemiology

description: Measles, an acute viral disease, continues to be an important cause of childhood mortality worldwide. Infection with the measles virus is thought to be associated with a transient but profound period of immune suppression. Recently, it has been claimed that measles-induced immune manipulation lasts for about 30 months and results in increased susceptibility to other co-circulating infectious diseases and more severe disease outcomes upon infection. We tested this hypothesis using model-based inference applied to parallel historical records of measles and whooping cough mortality and morbidity. Specifically, we used maximum likelihood to fit a mechanistic transmission model to incidence data from three different eras, spanning mortality records from 1904 to 1912 and 1922 to 1932 and morbidity records from 1946 to 1956. Our aim was to quantify the timing, severity and pathogenesis impacts of measles-induced immune modulation and their consequences for whooping cough epidemiology across a temporal gradient of measles transmission. We identified an increase in susceptibility to whooping cough following recent measles infection by approximately 85-, 10- and 36-fold for the three eras, respectively, though the duration of this effect was variable. Overall, while the immune impacts of measles may be strong and clearly evident at the individual level, their epidemiological signature in these data appears both modest and inconsistent.This article is part of the theme issue ‘Detection, forecasting and control of infectious disease epidemics: modelling outbreaks in humans, animals and plants Part 1’.
DOI: 10.6084/m9.figshare.7991867.v1
title: Benevento_etal_dataset_ESM from Patterns of mammalian jaw ecomorphological disparity during the Mesozoic/Cenozoic transition

description: A .cvs file including species names, specimen numbers, locality information, and PCA scores for each taxa included in this study
DOI: 10.6084/m9.figshare.8166554
title: Table S2 from Fin whale singing decreases with increased swimming speed.

description: The attributes of male acoustic advertisement displays are often related to a performer's age, breeding condition and motivation, but these relationships are particularly difficult to study in free-ranging marine mammals. For fin whale singers, we examined the relationships between a singer's swimming speed, song duration and amount of singing. We used a unique set of fin whale singing and swimming data collected in support of the US Navy's marine mammal monitoring programme associated with the Navy's Integrated Undersea Surveillance System. A goal of the programme is to improve understanding of the potential effects of anthropogenic sound sources on baleen whale behaviours and populations. We found that as whales swam faster, some continued to sing, while others did not. If swimming speed is an indication of male stamina, then singing while swimming faster could be a display by which females and/or other males assess a singer's physical fitness and potential reproductive quality. Results have implications for interpreting fin whale singing behaviour and the possible influences of anthropogenic sounds on fin whale mating strategies and breeding success.
DOI: 10.6084/m9.figshare.8166548
title: Table S1. Listing of data for each of the 163 singer tracks from Fin whale singing decreases with increased swimming speed.

description: Excel file listing swimming speed and associated data for each of the 163 singer tracks.
DOI: 10.6084/m9.figshare.8166554.v2
title: Table S2 from Fin whale singing decreases with increased swimming speed.

description: The attributes of male acoustic advertisement displays are often related to a performer's age, breeding condition and motivation, but these relationships are particularly difficult to study in free-ranging marine mammals. For fin whale singers, we examined the relationships between a singer's swimming speed, song duration and amount of singing. We used a unique set of fin whale singing and swimming data collected in support of the US Navy's marine mammal monitoring programme associated with the Navy's Integrated Undersea Surveillance System. A goal of the programme is to improve understanding of the potential effects of anthropogenic sound sources on baleen whale behaviours and populations. We found that as whales swam faster, some continued to sing, while others did not. If swimming speed is an indication of male stamina, then singing while swimming faster could be a display by which females and/or other males assess a singer's physical fitness and potential reproductive quality. Results have implications for interpreting fin whale singing behaviour and the possible influences of anthropogenic sounds on fin whale mating strategies and breeding success.
DOI: 10.6084/m9.figshare.8166548.v2
title: Table S1. Listing of data for each of the 163 singer tracks from Fin whale singing decreases with increased swimming speed.

description: Excel file listing swimming speed and associated data for each of the 163 singer tracks.
DOI: 10.6084/m9.figshare.8166554.v1
title: Table S2 from Fin whale singing decreases with increased swimming speed

description: The attributes of male acoustic advertisement displays are often related to a performer's age, breeding condition and motivation, but these relationships are particularly difficult to study in free-ranging marine mammals. For fin whale singers, we examined the relationships between a singer's swimming speed, song duration and amount of singing. We used a unique set of fin whale singing and swimming data collected in support of the US Navy's marine mammal monitoring programme associated with the Navy's Integrated Undersea Surveillance System. A goal of the programme is to improve understanding of the potential effects of anthropogenic sound sources on baleen whale behaviours and populations. We found that as whales swam faster, some continued to sing, while others did not. If swimming speed is an indication of male stamina, then singing while swimming faster could be a display by which females and/or other males assess a singer's physical fitness and potential reproductive quality. Results have implications for interpreting fin whale singing behaviour and the possible influences of anthropogenic sounds on fin whale mating strategies and breeding success.
DOI: 10.6084/m9.figshare.8166548.v1
title: Table S1. Listing of data for each of the 163 singer tracks from Fin whale singing decreases with increased swimming speed

description: Excel file listing swimming speed and associated data for each of the 163 singer tracks.
DOI: 10.6084/m9.figshare.8192372
title: Supplementary Information from Mathematical modelling for sustainable aphid control in agriculture via intercropping.

description: Contains supplementary Tables, figures and notes for the paper.
DOI: 10.6084/m9.figshare.8192372.v2
title: Supplementary Information from Mathematical modelling for sustainable aphid control in agriculture via intercropping.

description: Contains supplementary Tables, figures and notes for the paper.
DOI: 10.6084/m9.figshare.8203196
title: Ranked models describing variability in density (D), baseline detection (p0), and space use (σ) of the red-backed salamander as a function of site, season and time for population in James River Park, Richmond, VA. from Unexpected spatial population ecology of a widespread terrestrial salamander near its southern range edge.

description: Complete list of the 325 ranked models
DOI: 10.6084/m9.figshare.8203196.v2
title: Ranked models describing variability in density (D), baseline detection (p0), and space use (σ) of the red-backed salamander as a function of site, season and time for population in James River Park, Richmond, VA. from Unexpected spatial population ecology of a widespread terrestrial salamander near its southern range edge.

description: Complete list of the 325 ranked models
DOI: 10.6084/m9.figshare.8192372.v1
title: Supplementary Information from Mathematical modelling for sustainable aphid control in agriculture via intercropping

description: Contains supplementary Tables, figures and notes for the paper.
DOI: 10.6084/m9.figshare.8203196.v1
title: Ranked models describing variability in density (D), baseline detection (p0), and space use (σ) of the red-backed salamander as a function of site, season and time for population in James River Park, Richmond, VA. from Unexpected spatial population ecology of a widespread terrestrial salamander near its southern range edge

description: Complete list of the 325 ranked models
DOI: 10.6084/m9.figshare.8304602
title: Table S2. Dating evidence from Mid-Devensian climate and landscape in England: new data from Finningley, South Yorkshire.

description: Dating evidence for MIS 3 sites cited in the text
DOI: 10.6084/m9.figshare.8304599
title: Table S1. Finningley MCR comparisons from Mid-Devensian climate and landscape in England: new data from Finningley, South Yorkshire.

description: Mutual Climatic Range (MCR) calculation results for MIS 3 beetle based climate reconstrutions shown in figure 16. Data include comparison with modern day termperatures for Finningley.
DOI: 10.6084/m9.figshare.8304602.v2
title: Table S2. Dating evidence from Mid-Devensian climate and landscape in England: new data from Finningley, South Yorkshire.

description: Dating evidence for MIS 3 sites cited in the text
DOI: 10.6084/m9.figshare.8304599.v2
title: Table S1. Finningley MCR comparisons from Mid-Devensian climate and landscape in England: new data from Finningley, South Yorkshire.

description: Mutual Climatic Range (MCR) calculation results for MIS 3 beetle based climate reconstrutions shown in figure 16. Data include comparison with modern day termperatures for Finningley.
DOI: 10.6084/m9.figshare.8304602.v1
title: Table S2. Dating evidence from Mid-Devensian climate and landscape in England: new data from Finningley, South Yorkshire

description: Dating evidence for MIS 3 sites cited in the text
DOI: 10.6084/m9.figshare.8304599.v1
title: Table S1. Finningley MCR comparisons from Mid-Devensian climate and landscape in England: new data from Finningley, South Yorkshire

description: Mutual Climatic Range (MCR) calculation results for MIS 3 beetle based climate reconstrutions shown in figure 16. Data include comparison with modern day termperatures for Finningley.
DOI: 10.6084/m9.figshare.9165104
title: Table S2 from Loss of developmental diapause as prerequisite for social evolution in bees.

description: References used to determine the topologies and branch lengths for each group in the construction of the phylogeny used for ancestral reconstruction analysis.
DOI: 10.6084/m9.figshare.9165107
title: Table S1 from Loss of developmental diapause as prerequisite for social evolution in bees.

description: Table of the species used for correlation and ancestral reconstruction analysis. For each species were assined: sociality (1- solitary, 2- social); phase (diapause phase: 1- development, 2- adult, 3- reproductive, 4- no diapause and 5- plastic); nest type (1- ground, 2- cavity); voltinism (1- univoltine, 2- multivoltine); latitude degreess: the latitude of the place of collection os the individuals assigned; date: the date used for the phylogenies construction based on the references in the Table S2; classification: classification of the species per sub-family or tribe; references: references used to fill the informations on this table; *: species that were not used in the correlation analyses; blank cell - data not available
DOI: 10.6084/m9.figshare.9165107.v2
title: Table S1 from Loss of developmental diapause as prerequisite for social evolution in bees.

description: Table of the species used for correlation and ancestral reconstruction analysis. For each species were assined: sociality (1- solitary, 2- social); phase (diapause phase: 1- development, 2- adult, 3- reproductive, 4- no diapause and 5- plastic); nest type (1- ground, 2- cavity); voltinism (1- univoltine, 2- multivoltine); latitude degreess: the latitude of the place of collection os the individuals assigned; date: the date used for the phylogenies construction based on the references in the Table S2; classification: classification of the species per sub-family or tribe; references: references used to fill the informations on this table; *: species that were not used in the correlation analyses; blank cell - data not available
DOI: 10.6084/m9.figshare.9165104.v2
title: Table S2 from Loss of developmental diapause as prerequisite for social evolution in bees.

description: References used to determine the topologies and branch lengths for each group in the construction of the phylogeny used for ancestral reconstruction analysis.
DOI: 10.6084/m9.figshare.9165107.v1
title: Table S1 from Loss of developmental diapause as prerequisite for social evolution in bees

description: Table of the species used for correlation and ancestral reconstruction analysis. For each species were assined: sociality (1- solitary, 2- social); phase (diapause phase: 1- development, 2- adult, 3- reproductive, 4- no diapause and 5- plastic); nest type (1- ground, 2- cavity); voltinism (1- univoltine, 2- multivoltine); latitude degreess: the latitude of the place of collection os the individuals assigned; date: the date used for the phylogenies construction based on the references in the Table S2; classification: classification of the species per sub-family or tribe; references: references used to fill the informations on this table; *: species that were not used in the correlation analyses; blank cell - data not available
DOI: 10.6084/m9.figshare.9165104.v1
title: Table S2 from Loss of developmental diapause as prerequisite for social evolution in bees

description: References used to determine the topologies and branch lengths for each group in the construction of the phylogeny used for ancestral reconstruction analysis.
DOI: 10.6084/m9.figshare.9784931
title: Seguel_data_1_ESM.xlsx from Immune stability predicts tuberculosis infection risk in a wild mammal.

description: data set for first part of the result section (GLMMs)
DOI: 10.6084/m9.figshare.9784937
title: Seguel_data_2_ESM.xlsx from Immune stability predicts tuberculosis infection risk in a wild mammal.

description: data set for the second part of the result section (Cox models)
DOI: 10.6084/m9.figshare.9784931.v2
title: Seguel_data_1_ESM.xlsx from Immune stability predicts tuberculosis infection risk in a wild mammal.

description: data set for first part of the result section (GLMMs)
DOI: 10.6084/m9.figshare.9784937.v2
title: Seguel_data_2_ESM.xlsx from Immune stability predicts tuberculosis infection risk in a wild mammal.

description: data set for the second part of the result section (Cox models)
DOI: 10.6084/m9.figshare.9784931.v1
title: Seguel_data_1_ESM.xlsx from Immune stability predicts tuberculosis infection risk in a wild mammal

description: data set for first part of the result section (GLMMs)
DOI: 10.6084/m9.figshare.9784937.v1
title: Seguel_data_2_ESM.xlsx from Immune stability predicts tuberculosis infection risk in a wild mammal

description: data set for the second part of the result section (Cox models)
DOI: 10.6084/m9.figshare.9791297
title: Supplementary Table 4. from A Laurasian origin for a pantropical bird radiation is supported by genomic and fossil data (Aves: Coraciiformes).

description: Fossil taxa included in the biogeographical analysis, their closest crown group relative, stratigraphic age and distribution. Fossil taxa represent genera.
DOI: 10.6084/m9.figshare.9791297.v2
title: Supplementary Table 4. from A Laurasian origin for a pantropical bird radiation is supported by genomic and fossil data (Aves: Coraciiformes).

description: Fossil taxa included in the biogeographical analysis, their closest crown group relative, stratigraphic age and distribution. Fossil taxa represent genera.
DOI: 10.6084/m9.figshare.9791294
title: Supplementary Table 6. from A Laurasian origin for a pantropical bird radiation is supported by genomic and fossil data (Aves: Coraciiformes).

description: The five highest probabilities of inferred ancestral ranges, as given by the DEC+<i>j</i> model. Areas used to infer historical biogeography using BioGeoBears: A) North America; B) Caribbean islands, including Trinidad; C) South America; D) Palearctic, including arid Northern Africa; E) Sub-Saharan Africa and Madagascar; F) Indomalaya; G) Wallacea and the Philippines; H) New Guinea and Australia; I) Oceania, including the Bismarck Archipelago and New Zealand.
DOI: 10.6084/m9.figshare.9791297.v1
title: Supplementary Table 4. from A Laurasian origin for a pantropical bird radiation is supported by genomic and fossil data (Aves: Coraciiformes)

description: Fossil taxa included in the biogeographical analysis, their closest crown group relative, stratigraphic age and distribution. Fossil taxa represent genera.
DOI: 10.6084/m9.figshare.9791312
title: Supplementary Table 7. from A Laurasian origin for a pantropical bird radiation is supported by genomic and fossil data (Aves: Coraciiformes).

description: Biogeographical model selection using 9 areas (Fig. 1) and 7 maximum areas.
DOI: 10.6084/m9.figshare.9791294.v2
title: Supplementary Table 6. from A Laurasian origin for a pantropical bird radiation is supported by genomic and fossil data (Aves: Coraciiformes).

description: The five highest probabilities of inferred ancestral ranges, as given by the DEC+<i>j</i> model. Areas used to infer historical biogeography using BioGeoBears: A) North America; B) Caribbean islands, including Trinidad; C) South America; D) Palearctic, including arid Northern Africa; E) Sub-Saharan Africa and Madagascar; F) Indomalaya; G) Wallacea and the Philippines; H) New Guinea and Australia; I) Oceania, including the Bismarck Archipelago and New Zealand.
DOI: 10.6084/m9.figshare.9791306
title: Supplementary Table 3. from A Laurasian origin for a pantropical bird radiation is supported by genomic and fossil data (Aves: Coraciiformes).

description: Biogeographical coding of 188 ingroup Coraciiform species, four outgroup species, and nine fossil species. An “X” indicates that the species is present. Areas used to infer historical biogeography using BioGeoBears: A) North America; B) Caribbean islands, including Trinidad; C) South America; D) Palearctic, including arid Northern Africa; E) Sub-Saharan Africa and Madagascar; F) Indomalaya; G) Wallacea and the Philippines; H) New Guinea and Australia; I) Oceania, including the Bismarck Archipelago and New Zealand. Fossil species represent the distribution of their genus.
DOI: 10.6084/m9.figshare.9791294.v1
title: Supplementary Table 6. from A Laurasian origin for a pantropical bird radiation is supported by genomic and fossil data (Aves: Coraciiformes)

description: The five highest probabilities of inferred ancestral ranges, as given by the DEC+<i>j</i> model. Areas used to infer historical biogeography using BioGeoBears: A) North America; B) Caribbean islands, including Trinidad; C) South America; D) Palearctic, including arid Northern Africa; E) Sub-Saharan Africa and Madagascar; F) Indomalaya; G) Wallacea and the Philippines; H) New Guinea and Australia; I) Oceania, including the Bismarck Archipelago and New Zealand.
DOI: 10.6084/m9.figshare.9791312.v2
title: Supplementary Table 7. from A Laurasian origin for a pantropical bird radiation is supported by genomic and fossil data (Aves: Coraciiformes).

description: Biogeographical model selection using 9 areas (Fig. 1) and 7 maximum areas.
DOI: 10.6084/m9.figshare.9791306.v2
title: Supplementary Table 3. from A Laurasian origin for a pantropical bird radiation is supported by genomic and fossil data (Aves: Coraciiformes).

description: Biogeographical coding of 188 ingroup Coraciiform species, four outgroup species, and nine fossil species. An “X” indicates that the species is present. Areas used to infer historical biogeography using BioGeoBears: A) North America; B) Caribbean islands, including Trinidad; C) South America; D) Palearctic, including arid Northern Africa; E) Sub-Saharan Africa and Madagascar; F) Indomalaya; G) Wallacea and the Philippines; H) New Guinea and Australia; I) Oceania, including the Bismarck Archipelago and New Zealand. Fossil species represent the distribution of their genus.
DOI: 10.6084/m9.figshare.9791312.v1
title: Supplementary Table 7. from A Laurasian origin for a pantropical bird radiation is supported by genomic and fossil data (Aves: Coraciiformes)

description: Biogeographical model selection using 9 areas (Fig. 1) and 7 maximum areas.
DOI: 10.6084/m9.figshare.9791306.v1
title: Supplementary Table 3. from A Laurasian origin for a pantropical bird radiation is supported by genomic and fossil data (Aves: Coraciiformes)

description: Biogeographical coding of 188 ingroup Coraciiform species, four outgroup species, and nine fossil species. An “X” indicates that the species is present. Areas used to infer historical biogeography using BioGeoBears: A) North America; B) Caribbean islands, including Trinidad; C) South America; D) Palearctic, including arid Northern Africa; E) Sub-Saharan Africa and Madagascar; F) Indomalaya; G) Wallacea and the Philippines; H) New Guinea and Australia; I) Oceania, including the Bismarck Archipelago and New Zealand. Fossil species represent the distribution of their genus.
DOI: 10.6084/m9.figshare.9791324
title: Supplementary Table 5. from A Laurasian origin for a pantropical bird radiation is supported by genomic and fossil data (Aves: Coraciiformes).

description: Molecular dataset statistics.
DOI: 10.6084/m9.figshare.9791324.v2
title: Supplementary Table 5. from A Laurasian origin for a pantropical bird radiation is supported by genomic and fossil data (Aves: Coraciiformes).

description: Molecular dataset statistics.