cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c57x7n
title: MassIVE MSV000086064 - GNPS_18 Bacterial Strains_03092020
title: GNPS_18 Bacterial Strains_03092020. not applicable.
DOI: 10.6084/m9.figshare.12911240
title: Supplementary Material for: Topical Over-the-Counter Antiaging Agents: An Update and Systematic Review

description: Over-the-counter antiaging formulations aim to prevent or minimize the signs of aging skin, and to maintain the benefits obtained from different cosmetic procedures. Even though a huge selection of such products is available on the market, evidence and good clinical practice of the data supporting their use are oftentimes lacking. In this systematic review, the authors reviewed scientific data available in the published literature on the most common ingredients used in antiaging cosmetics, with a particular focus on in vivo studies.
DOI: 10.6084/m9.figshare.4341887
title: Inherent mechanophenotype influences cellular assembly

description: Elastic, viscoelastic, and height data for different cellular assemblies formed on compliant substrates, determined using atomic force microscopy.
DOI: 10.6084/m9.figshare.4341887.v2
title: Inherent mechanophenotype influences cellular assembly

description: Elastic, viscoelastic, and height data for different cellular assemblies formed on compliant substrates, determined using atomic force microscopy.
DOI: 10.6084/m9.figshare.4341887.v1
title: Figure 2 - transfected cells characterisation.xlsx

description: Elastic, viscoelastic, and height data for different cellular assemblies formed on compliant substrates, determined using atomic force microscopy.
DOI: 10.6084/m9.figshare.4341020
title: Changing edaphic conditions and exploitation of an expanded phenological niche allows for increased exotic plant species dominance

description: Dataset to accompany article entitled "Changing edaphic conditions and exploitation of an expanded phenological niche allows for increased exotic (introduced) plant species dominance", accepted for publication in Plant and Soil in 2016<br>
DOI: 10.6084/m9.figshare.4341020.v1
title: Changing edaphic conditions and exploitation of an expanded phenological niche allows for increased exotic plant species dominance

description: Dataset to accompany article entitled "Changing edaphic conditions and exploitation of an expanded phenological niche allows for increased exotic (introduced) plant species dominance", accepted for publication in Plant and Soil in 2016<br>
DOI: 10.5281/zenodo.4013213
title: files_TFM

description: All the simulations used to perform the VQE and QAOA convergence study for the max-cut problems included in my master's thesis. The simulations have been produced using the code at: https://github.com/NTrevisani/TFM
DOI: 10.5281/zenodo.4013212
title: files_TFM

description: All the simulations used to perform the VQE and QAOA convergence study for the max-cut problems included in my master's thesis. The simulations have been produced using the code at: https://github.com/NTrevisani/TFM
DOI: 10.5281/zenodo.3941636
title: HADDOCK Coarse-Grained Protein-DNA Docking Dataset

description: This dataset is the result of the benchmarking done in the publication <em>MARTINI-Based Protein-DNA Coarse-Grained HADDOCKing</em> in which HADDOCK's coarse-grain support is extended to Protein-DNA docking. It contains both the All-atom and Coarse-Grained output of 46 macromolecular complexes derived from the Protein-DNA benchmark (10.1093/nar/gkn386) as well as 6 complexes with experimental information, CAPRI Target 95 (PRC1 ubiquitination module bound to the nucleosome) and all new parameters added to HADDOCK.
DOI: 10.5281/zenodo.3941635
title: HADDOCK Coarse-Grained Protein-DNA Docking Dataset

description: This dataset is the result of the benchmarking done in the publication <em>MARTINI-Based Protein-DNA Coarse-Grained HADDOCKing</em> in which HADDOCK's coarse-grain support is extended to Protein-DNA docking. It contains both the All-atom and Coarse-Grained output of 46 macromolecular complexes derived from the Protein-DNA benchmark (10.1093/nar/gkn386) as well as 6 complexes with experimental information, CAPRI Target 95 (PRC1 ubiquitination module bound to the nucleosome) and all new parameters added to HADDOCK.
DOI: 10.5281/zenodo.3932049
title: Data for the publication 'The impact of warm and moist air mass perturbations on Arctic mixed-phase stratocumulus'

description: This repository contains the data for the paper: 'Eirund, G. K., Possner, A. and Lohmann, U.: The impact of warm and moist air mass perturbations on Arctic mixed-phase stratocumulus.', published in J. Climate, 2020 (doi: 10.1175/JCLI-D-20-0163.1.). Each netcdf file contains the data for the respective simulation indicated by the prefix of the filename. Important information on the data are included in the README file.
description: Funding received by Anna Possner: MOPGA-GRI (57429624) by BMBF
DOI: 10.5281/zenodo.3699108
title: Data for the publication 'The impact of warm and moist air mass perturbations on Arctic mixed-phase stratocumulus'

description: This repository contains the data for the paper: 'Eirund, G. K., Possner, A. and Lohmann, U.: The impact of warm and moist air mass perturbations on Arctic mixed-phase stratocumulus.', published in J. Climate, 2020 (doi: 10.1175/JCLI-D-20-0163.1.). Each netcdf file contains the data for the respective simulation indicated by the prefix of the filename. Important information on the data are included in the README file.
description: Funding received by Anna Possner: MOPGA-GRI (57429624) by BMBF
DOI: 10.6084/m9.figshare.4334048.v2
title: Ensemble MT-MrSBC and Ensemble ST-MrSBC systems

description: - MT-MrSBC & MT-MrSBC jar file- Zip file with dataset used for the experiments (They are dump databases generated on PostgreSQL 9.5)- Zip file with the 10-fold cross validation used for the experiments- Bat file "runExperiments.bat" to launch the system on Windows using several configuration files- Example configuration file "configuration.properties" for launching the system- A bunch of other files used by classic Mr-SBC system
DOI: 10.6084/m9.figshare.4334048.v3
title: Ensemble MT-MrSBC and Ensemble ST-MrSBC systems

description: - MT-MrSBC & MT-MrSBC jar file- Zip file with dataset used for the experiments (They are dump databases generated on PostgreSQL 9.5)- Zip file with the 10-fold cross validation used for the experiments- Bat file "runExperiments.bat" to launch the system on Windows using several configuration files- Example configuration file "configuration.properties" for launching the system- A bunch of other files used by classic Mr-SBC system
DOI: 10.25345/c5476f
title: MassIVE MSV000086065 - GNPS_AB_untargetedmetabolomics_workflow_test#1
title: GNPS_AB_untargetedmetabolomics_workflow_test#1 Untargeted metabolomics of plant samples based on LC MSMS
DOI: 10.6084/m9.figshare.12911336.v1
title: A novel multi-stage ensemble model with fuzzy-clustering and optimized classifier composition for corporate bankruptcy prediction

description: In this experiment, the datasets are from the UC Irvine (UCI) UCI machine learning repository (Zięba et al., 2016), which contains the financial indicators of Polish manufacturing corporates from 2007 to 2011 in the real world. The datasets were separated into five parts (each part represents each fiscal year) that describe the period from the 1st year (2007 fiscal year) to the 5th year (2011 fiscal year), which corresponds to five different bankruptcy cycles. The class labels (“0” is operating and “1” is bankruptcy) of the datasets are determined by the bankruptcy status of the enterprise in 2012. Furthermore, the Creator dataset from the real world that was published by a Chinese intelligent government services provider called Creator Information Technology Co., Ltd in 2019 was also adopted. The Creator dataset includes company management information of 35960 Chinese companies.
DOI: 10.6084/m9.figshare.12911336
title: A novel multi-stage ensemble model with fuzzy-clustering and optimized classifier composition for corporate bankruptcy prediction

description: In this experiment, the datasets are from the UC Irvine (UCI) UCI machine learning repository (Zięba et al., 2016), which contains the financial indicators of Polish manufacturing corporates from 2007 to 2011 in the real world. The datasets were separated into five parts (each part represents each fiscal year) that describe the period from the 1st year (2007 fiscal year) to the 5th year (2011 fiscal year), which corresponds to five different bankruptcy cycles. The class labels (“0” is operating and “1” is bankruptcy) of the datasets are determined by the bankruptcy status of the enterprise in 2012. Furthermore, the Creator dataset from the real world that was published by a Chinese intelligent government services provider called Creator Information Technology Co., Ltd in 2019 was also adopted. The Creator dataset includes company management information of 35960 Chinese companies.
DOI: 10.6084/m9.figshare.4331345
title: Gut_MSQ_dataset_final.sav

description: Data regarding the use of a dietary intervention designed to manipulate gut bacteria, <i>The Gut Makeover</i>. This dietary protocol has been published in the UK and is due to be published in the US in 2017. This is the first research study, to our knowledge, to assess the program in terms of any benefits it may have to general health. Physical and emotional well-being were assessed pre- and post-intervention using the Medical Symptoms Questionnaire; we report rapid, extensive, high-magnitude reductions in medical symptoms over this four-week time period. Before and after measurements are available for 21 participants on the following sub-scales: Total medical symptom score, head symptoms, eye symptoms, nose symptoms, skin symptoms, heart symptoms, digestive symptoms, joint and muscle symptoms, weight symptoms, energy symptoms, mind symptoms and emotion symptoms.
DOI: 10.6084/m9.figshare.4331345.v1
title: Gut_MSQ_dataset_final.sav

description: Data regarding the use of a dietary intervention designed to manipulate gut bacteria, <i>The Gut Makeover</i>. This dietary protocol has been published in the UK and is due to be published in the US in 2017. This is the first research study, to our knowledge, to assess the program in terms of any benefits it may have to general health. Physical and emotional well-being were assessed pre- and post-intervention using the Medical Symptoms Questionnaire; we report rapid, extensive, high-magnitude reductions in medical symptoms over this four-week time period. Before and after measurements are available for 21 participants on the following sub-scales: Total medical symptom score, head symptoms, eye symptoms, nose symptoms, skin symptoms, heart symptoms, digestive symptoms, joint and muscle symptoms, weight symptoms, energy symptoms, mind symptoms and emotion symptoms.
DOI: 10.6084/m9.figshare.4331036
title: OpenWorm Open House Supplemental Materials

description: Presentation and supplemental materials (readings, etc) from the OpenWorm Open House, held on the internet on October 25, 2016. Materials for nine 5-minute presentations and two 45-minute workshops.
DOI: 10.6084/m9.figshare.4331036.v1
title: OpenWorm Open House Supplemental Materials

description: Presentation and supplemental materials (readings, etc) from the OpenWorm Open House, held on the internet on October 25, 2016. Materials for nine 5-minute presentations and two 45-minute workshops.
DOI: 10.6084/m9.figshare.4330958
title: Supplementary Material for: Predictor Variables of Developing Anterior Pituitary Deficiencies in a Group of Paediatric Patients with Central Diabetes Insipidus and Langerhans Cell Histiocytosis

description: <b><i>Background:</i></b> Langerhans cell histiocytosis (LCH) is a rare histiocytic disorder of unknown etiopathogenesis. Central diabetes insipidus (CDI) is the most frequent endocrine manifestation and is a known risk factor for the development of further anterior pituitary hormone deficiencies (APD). However, not all CDI patients develop APD, as observed during prolonged periods of follow-up. <b><i>Aim:</i></b> To find predictors of developing APD in LCH children with CDI followed in our institution. <b><i>Methods:</i></b> We retrospectively analysed 44 patients over a median period (quartiles) of 12.3 years (8.79-14.24). Patients were subdivided into group 1 and group 2, according to absence or presence of APD, respectively. The main variables studied were: (1) chronological age (CA) at LCH diagnosis, (2) the primary site of LCH at diagnosis: low risk (LR) and multisystemic risk organs, and (3) the presence of reactivation. <b><i>Results:</i></b> Multivariate Cox regression analysis showed that APD was positively associated with CA at LCH diagnosis [relative risk (RR) 1.14, <i>p</i> &lt; 0.01], the LR clinical form (RR 8.6, <i>p</i> &lt; 0.03), and negatively associated with the presence of reactivations (RR 0.3, <i>p</i> &lt; 0.01). <b><i>Conclusions:</i></b> Patients with older CA at LCH diagnosis, LR clinical forms, and fewer reactivation episodes might represent a subgroup of paediatric LCH CDI patients with a higher risk of developing APD.
DOI: 10.6084/m9.figshare.4330958.v1
title: Supplementary Material for: Predictor Variables of Developing Anterior Pituitary Deficiencies in a Group of Paediatric Patients with Central Diabetes Insipidus and Langerhans Cell Histiocytosis

description: <b><i>Background:</i></b> Langerhans cell histiocytosis (LCH) is a rare histiocytic disorder of unknown etiopathogenesis. Central diabetes insipidus (CDI) is the most frequent endocrine manifestation and is a known risk factor for the development of further anterior pituitary hormone deficiencies (APD). However, not all CDI patients develop APD, as observed during prolonged periods of follow-up. <b><i>Aim:</i></b> To find predictors of developing APD in LCH children with CDI followed in our institution. <b><i>Methods:</i></b> We retrospectively analysed 44 patients over a median period (quartiles) of 12.3 years (8.79-14.24). Patients were subdivided into group 1 and group 2, according to absence or presence of APD, respectively. The main variables studied were: (1) chronological age (CA) at LCH diagnosis, (2) the primary site of LCH at diagnosis: low risk (LR) and multisystemic risk organs, and (3) the presence of reactivation. <b><i>Results:</i></b> Multivariate Cox regression analysis showed that APD was positively associated with CA at LCH diagnosis [relative risk (RR) 1.14, <i>p</i> &lt; 0.01], the LR clinical form (RR 8.6, <i>p</i> &lt; 0.03), and negatively associated with the presence of reactivations (RR 0.3, <i>p</i> &lt; 0.01). <b><i>Conclusions:</i></b> Patients with older CA at LCH diagnosis, LR clinical forms, and fewer reactivation episodes might represent a subgroup of paediatric LCH CDI patients with a higher risk of developing APD.
DOI: 10.6084/m9.figshare.4330265
title: Supplementary Material for: Critical Analysis of a Series of Early Inguinal Ureterostomies: Are They Useful and How Well Are They Tolerated

description: <b><i>Introduction:</i></b> The study aimed to evaluate the advantages of temporary inguinal ureterostomy in the management of neonates with uropathies and early or recurrent pyelonephritis. <b><i>Patients and Methods:</i></b> We performed a retrospective analysis of all patients who underwent ureterostomies between 1989 and 2012, with specific regards to indications and outcomes. We also performed a survey of parents to evaluate their acceptance of diversion. <b><i>Results:</i></b> We included 18 patients (12 primary high-grade vesicoureteral reflux [VUR] and 6 primary obstructive megaureters [MUs]). Indications were recurrent febrile urinary tract infections (UTIs) despite antibiotic prophylaxis, doubtful function of the overlying kidney for the oldest cases, when renal function was only assessed by intravenous urography, or both. Cutaneous diversion was performed between the ages of 2 weeks to 5 months (median: 1.8 months). Renal function was assessed prior to undiversion to choose between reimplantation and nephrectomy. The incidence of febrile UTIs significantly decreased during the period of diversion. Urinary diversion was judged socially acceptable by parents. Ureterostomy did not modify the overlying kidney function. <b><i>Conclusion:</i></b> Temporary inguinal ureterostomy does not enable better evaluation of renal function by suppressing the pressure of an obstacle or refluxing urines. Its remaining indication seems to be the prevention of recurrent UTIs in neonates and infants with VUR or MU, pending reimplantation.
DOI: 10.6084/m9.figshare.4330265.v1
title: Supplementary Material for: Critical Analysis of a Series of Early Inguinal Ureterostomies: Are They Useful and How Well Are They Tolerated

description: <b><i>Introduction:</i></b> The study aimed to evaluate the advantages of temporary inguinal ureterostomy in the management of neonates with uropathies and early or recurrent pyelonephritis. <b><i>Patients and Methods:</i></b> We performed a retrospective analysis of all patients who underwent ureterostomies between 1989 and 2012, with specific regards to indications and outcomes. We also performed a survey of parents to evaluate their acceptance of diversion. <b><i>Results:</i></b> We included 18 patients (12 primary high-grade vesicoureteral reflux [VUR] and 6 primary obstructive megaureters [MUs]). Indications were recurrent febrile urinary tract infections (UTIs) despite antibiotic prophylaxis, doubtful function of the overlying kidney for the oldest cases, when renal function was only assessed by intravenous urography, or both. Cutaneous diversion was performed between the ages of 2 weeks to 5 months (median: 1.8 months). Renal function was assessed prior to undiversion to choose between reimplantation and nephrectomy. The incidence of febrile UTIs significantly decreased during the period of diversion. Urinary diversion was judged socially acceptable by parents. Ureterostomy did not modify the overlying kidney function. <b><i>Conclusion:</i></b> Temporary inguinal ureterostomy does not enable better evaluation of renal function by suppressing the pressure of an obstacle or refluxing urines. Its remaining indication seems to be the prevention of recurrent UTIs in neonates and infants with VUR or MU, pending reimplantation.
DOI: 10.6084/m9.figshare.12910268
title: data.zip

description: Basic data
DOI: 10.6084/m9.figshare.12910268.v2
title: data.zip

description: Basic data
DOI: 10.6084/m9.figshare.12910268.v1
title: data.zip

description: Basic data
DOI: 10.6084/m9.figshare.12911330
title: Supplementary Material for: High Prevalence of Hearing Impairment in Primary Congenital Hypothyroidism

description: <b><i>Background:</i></b> An association between hearing impairment (HI) and congenital hypothyroidism (CH) has been reported previously. However, in general, studies were retrospective and had small sample sizes, and the results were variable and inconclusive. The aim of our study was to assess the prevalence of HI among patients with CH and to examine factors potentially predictive of HI including severity of CH, etiology of CH, and timing of treatment initiation. <b><i>Methods:</i></b> Audiometry was undertaken prospectively in 66 patients aged 3–21 years diagnosed with primary CH and 49 healthy matched controls. All patients with HI underwent examination by an otolaryngologist, and in patients with sensorineural loss, brainstem evoked response audiometry was performed. A next-generation sequencing (NGS) panel for genes involved in deafness was performed in patients with sensorineural HI to exclude additional genetic etiologies. <b><i>Results:</i></b> HI was found in 19 patients (28.7%). Among them, 5 (7.6%) had moderate to severe bilateral sensorineural impairment and 14 (21.2%) had mild conductive HI. Conductive HI was bilateral in 5 of these patients (36%). None of the controls had HI. No specific etiology was found in patients with HI, and no differences were identified in age at diagnosis, age at initiation of levothyroxine (LT<sub>4</sub>) therapy, gender, or ethnicity between patients with and without HI. A nonsignificant trend toward lower mean screening TT<sub>4</sub> levels was found in patients with HI (compared to those without HI) (3.42 vs. 5.34 μg/dL, <i>p</i> = 0.095). No pathogenic variants in genes attributed to HI were identified by NGS in the 5 patients with sensorineural deafness, indicating that HI in these patients was likely attributable to CH rather than other genetic etiologies. <b><i>Conclusions:</i></b> Our findings indicate a high prevalence of HI among patients with CH, predominantly of the conductive type. HI was not associated with the etiology of CH or with delayed initiation of LT<sub>4</sub> therapy. Audiometry is recommended for children diagnosed with CH and repeat monitoring may be warranted to identify acquired HI and to prevent long-term sequelae of undiagnosed deafness.
DOI: 10.6084/m9.figshare.4329809
title: Large scale genomic analysis shows no evidence for pathogen adaptation between the blood and cerebrospinal fluid niches during bacterial meningitis

description: Supporting data as published in <i>Microbial Genomics</i> in the following article: Large scale genomic analysis shows no evidence for pathogen adaptation between the blood and cerebrospinal fluid niches during bacterial meningitis 10.1099/mgen.0.000103
DOI: 10.6084/m9.figshare.4329809.v1
title: Large scale genomic analysis shows no evidence for pathogen adaptation between the blood and cerebrospinal fluid niches during bacterial meningitis

description: Supporting data as published in <i>Microbial Genomics</i> in the following article: Large scale genomic analysis shows no evidence for pathogen adaptation between the blood and cerebrospinal fluid niches during bacterial meningitis 10.1099/mgen.0.000103
DOI: 10.6084/m9.figshare.4329638
title: Supplementary Material for: Association between Obstructive Sleep Apnea and Acute Kidney Injury in Critically Ill Patients: A Propensity-Matched Study

description: <b><i>Background/Aims:</i></b> Obstructive sleep apnea (OSA) is a known risk factor for chronic kidney disease (CKD); however, its association with acute kidney injury (AKI) is not well documented. We aimed to study whether OSA is associated with the risk of AKI in the intensive care unit (ICU) setting. <b><i>Methods:</i></b> All consecutive adult Olmsted County, MN residents who were admitted in Mayo Clinic ICUs from January 1, 2010 to December 31, 2010 were screened. Chronic and acute risk factors were collected within the first 48 h of ICU admission. Logistic regression and propensity score matching were used to examine crude and adjusted associations of OSA with AKI. <b><i>Results:</i></b> Among 1,259 enrolled ICU patients, 183 patients had a diagnosis of OSA prior to the index ICU admission. Compared with non-OSA patients, the incidence of AKI in OSA patients was more frequent (41 vs. 57%, <i>p </i>&lt; 0.001). In univariate analysis, it was found that CKD, age, gender, Caucasian race, congestive heart failure, cerebrovascular disease, diabetes mellitus, body mass index, and OSA were associated with AKI. In the multivariate model, following adjustment for age, gender, race, and chronic and acute risk factors, OSA was found to have an independent association with AKI (OR 1.53; 95% CI 1.04-2.24; <i>p </i>= 0.031). Among 176 propensity score matched pairs, there was a significant difference in the incidence of AKI between the OSA and non-OSA groups (OR 1.54; 95% CI 1.01-2.35; <i>p</i> = 0.04). <b><i>Conclusions:</i></b> The history of OSA diagnosed by polysomnography is associated with higher risk of AKI in critically ill patients.