cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.b5mkkwh8x
title: Comparing the impacts of an invasive grass on nitrogen cycling and ammonia-oxidizing Prokaryotes in high-nitrogen forests, open fields, and wetlands

description: Aims Numerous invasive plant species can increase soil nitrate (NO3-) by
 altering the nitrification process through plant-soil microbe interactions
 with ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB).
 We evaluated how the invasive species Microstegium vimineum influenced
 physico-chemical soil properties, inorganic nitrogen (N) cycling, and AOA
 and AOB abundances under various environmental conditions. Methods We
 paired 75 M. vimineum-invaded plots with 75 neighboring reference plots
 across forests, open fields, and forested wetlands within a state park in
 the Mid-Atlantic United States that has received high levels of N
 deposition. Soils were sampled for physico-chemical properties, NO3- and
 ammonium (NH4+) pools and availability, and AOA and AOB abundances.
 Results There were multiple soil impacts associated with M. vimineum
 across all ecosystems, most consistent were increased soil pH and
 increased NO3- pools. For other impacts, the directionality and effect
 sizes varied among ecosystems (e.g. NH4+ pools were 34% lower in forests,
 35% lower in open fields, and 90% higher in wetlands relative to reference
 plots). Finally, forests had nearly all of impacts predicted by a
 pH-mediated nitrification plant-soil feedback. Conclusion This study
 highlights the ability of an invasive grass to alter N cycling and soil
 properties in forests, open fields, and wetlands that have received high N
 deposition. We also show how invader-mediated impacts to N cycling may be
 dependent on the context of the ecosystem being invaded, including its
 hydrology, ambient soil conditions, and substrate-availability.
DOI: 10.15468/dl.427qpf
title: Occurrence Download

description: A dataset containing 98 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acrocarpus fraxinifolius",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 98 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002203-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hsrj7q
title: Occurrence Download

description: A dataset containing 14711 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Adinetidae, Brachionidae, Gastropodidae, Dicranophoridae, Asplanchnidae, Euchlanidae, Proalidae, Notommatidae, Philodinidae, Collothecidae, Lepadellidae, Conochilidae, Trichocercidae, Epiphanidae, Trochosphaeridae, Flosculariidae, Habrotrochidae, Hexarthridae, Ituridae, Lecanidae, Lindiidae, Mytilinidae, Trichotriidae, Microcodidae, Philodinavidae, Synchaetidae, Testudinellidae, Scaridiidae, Tetrasiphonidae, Centropagidae, Diaptomidae, Cyclopidae, Halicyclopidae, Lernaeidae, Canthocamptidae, Ameiridae, Laophontidae, Phyllognathopodidae, Miraciidae, Ergasilidae, Daphniidae, Moinidae, Bosminidae, Chydoridae, Macrothricidae, Ilyocryptidae, Neothricidae)",
 "Geometry POLYGON ((-181.131592 -37.12775, -187.78141 -33.078885, -189.068184 -33.987495, -186.411552 -37.925243, -192.774353 -44.251839, -195.387383 -46.345032, -192.379532 -48.31083, -188.062592 -45.989329, -183.377609 -41.69727, -180.416107 -38.542795, -181.131592 -37.12775))"
 ]
}

 The dataset includes 14711 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002201-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n3zz4p
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lampichthys procerus",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 18 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002200-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.wdbrv15jw
title: Data for: Thermal habitat of brook trout in lakes of different size

description: We assessed thermal habitat use of lake-dwelling Brook Trout (Salvelinus
 fontinalis) populations in 39 lakes of varying size with short-set
 duration, stratified-random netting surveys in Algonquin Park, Ontario,
 Canada. Temperature at capture depth was determined from vertical
 temperature profiles and used as a proxy of Brook Trout temperature
 selection. Almost all Brook Trout observations fit within their aerobic
 scope, indicating that our approach adequately captured the distribution
 of body temperature for this species. However, we found a bimodal
 distribution of temperatures at capture depth. Most fish occupied a cold
 mode at capture, but a smaller subset of fish was captured in a
 warm-temperature mode that occurred in all lake-size categories,
 indicating Brook Trout that appeared to be actively moving into the
 warm-temperature mode. Adult Brook Trout occupied colder thermal habitats,
 on average, than published literature estimates and were found in
 significantly-colder temperatures than subadult Brook Trout within the
 same lake. Variation in thermal habitat use increased as lake size
 decreased. For lakes &lt;100 ha, temperatures at capture depth were
 highly variable and ranged from 7.2 to 17.7°C. We report weighted means
 and distributions of thermal habitat boundaries because these boundaries
 may aid future efforts to project the influence of climate change on Brook
 Trout. Dissolved oxygen at capture depth suggested that fish occupy either
 an upper mode &gt;5 ppm or a lower mode, including individuals
 captured at depths where dissolved oxygen is &lt;2 ppm.
description: Depth stratified random netting surveys were conducted in 39
 brook trout lakes in Algonquin Provincial Park, Ontario, Canada.  Set
 duration was for one hour providing as close to an instantaneous sample of
 fish location as could be done in a multi-lake survey.  Temperature and
 dissolved oxygen depth profiles were used to convert catches at depth to
 capture temperature or dissolved oxygen. Patterns in thermal habitat were
 compared to an aerobic scope curve to determine if field thermal habitat
 selection matches physiological performance. 
description: Data are partitioned by life stage (adult or sub-adul) and lake.
 All figures and tables are based on this data set.
DOI: 10.5061/dryad.ht76hdrbt
title: Environmentally triggered variability in the genetic variance-covariance of herbivory resistance of an exotic plant Solidago altissima

description: The variability in the genetic variance-covariance (G-matrix) in plant
 resistance and its role in the evolution of invasive plants have been long
 overlooked. We conducted an additional analysis of the data of a
 reciprocal transplant experiment with tall goldenrod, Solidago
 altissima, in multiple garden sites within its native range (USA) and
 introduced range (Japan). We explored the differences in G-matrix of
 resistance to two types of foliar herbivores: (1) a lace bug that is
 native to the USA and recently introduced to Japan, (2) and other
 herbivorous insects in response to plant origins and environments. A
 negative genetic covariance was found between plant resistances to lace
 bugs and other herbivorous insects, in all combinations of garden
 locations and plant origins except for USA plants planted in USA gardens.
 The G-matrix of the resistance indices did not differ between USA and
 Japanese plants either in USA or Japanese gardens, while it differed
 between USA and Japanese gardens in both USA and Japanese plants. Our
 results suggested that the G-matrix of the plant resistance may have
 changed in response to novel environmental differences including herbivore
 communities and/or other biotic and abiotic factors in the introduced
 range. This may have revealed a hidden trade-off between resistances,
 masked by the environmental factors in the origin range. These results
 suggest that the stability of the genetic
 covariance during invasion and the environmentally triggered
 variability in the G-matrices of plant resistance may help to protect the
 plant against multiple herbivore species without changing its genetic
 architecture, and that this may lead to a rapid adaptation of resistance
 in exotic plants. Local environments of the plant also have a critical
 effect on plant resistance, and should be considered in order to
 understand trait evolution in exotic plants. 
description: README_for_Sakata_et_al_G-matrix_DATA_DRYAD
 Sakata_et_al_G-matrix_CODE_Krzanowski’s_common_subspaces japan_j.csv
DOI: 10.15139/s3/4if2cr
title: Data Management and Sharing Plan for: APEC14B1 The Project EveryChild Protocol: A Registry, Eligibility Screening, Biology and Outcome Study.

description: The Data Management and Sharing Plan describes the scientific data to be generated and/or used in the research and outlines a strategy for managing and sharing project data.
description: Data Management and Sharing Plan
DOI: 10.25934/pr00012553.0
title: Available datapackage for study 'Improving the Response of Local Urban and Rural Communities to Disparities in COVID-19 Testing'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.5061/dryad.sj3tx961z
title: Temperature stress induces mites to help their carrion beetle hosts by eliminating rival blowflies

description: Ecological conditions are known to change the expression of mutualisms
 though the causal agents driving such changes remain poorly understood.
 Here we show that temperature stress modulates the harm threatened by a
 common enemy, and thereby induces a phoretic mite to become a protective
 mutualist. Our experiments focus on the interactions between the burying
 beetle Nicrophorus vespilloides, an associated mite
 species Poecilochirus carabi and their common enemy,
 blowflies, when all three species reproduce on the same small vertebrate
 carrion. We show that mites compete with beetle larvae for food in the
 absence of blowflies, and reduce beetle reproductive success. However,
 when blowflies breed on the carrion too, mites enhance beetle reproductive
 success by eating blowfly eggs. High densities of mites are especially
 effective at promoting beetle reproductive success at higher and lower
 natural ranges in temperature, when blowfly larvae are more potent rivals
 for the limited resources on the carcass.
DOI: 10.18738/t8/n6kkc8
title: Reconciling Approximate ODEs and Noisy Data Using Theory of Functional Connections_v0

description: The dataset includes the code and associated data developed for the manuscript titled "Reconciling Approximate ODEs and Noisy Data Using Theory of Functional Connections". The script includes application of Theory of Functional Connections to an ODE representing the time evolution of soil moisture and data extrapolated from satellite measurements (NASA SMAP L4 data product).
DOI: 10.5061/dryad.dfn2z34x6
title: Neuropathological features associated with basal forebrain atrophy in Alzheimer’s disease

description: Objective: To study the neuropathological correlates of cholinergic basal
 forebrain atrophy as determined using ante-mortem MRI in the Alzheimer’s
 disease (AD) spectrum. Methods: We determined associations between basal
 forebrain (BF) volume from antemortem MRI brain scans and post-mortem
 assessment of neuropathological features, including neuritic plaques,
 neurofibrillary tangles (NFT), Lewy body (LB) pathology, and TDP-43, in 64
 cases of the Alzheimer’s Disease Neuroimaging Initiative (ADNI) cohort.
 For comparison, we assessed neuropathological features associated with
 hippocampal and parahippocampal gyrus atrophy. In addition to region of
 interest-based analysis, we determined the association of
 neuropathological features with whole brain grey matter volume using
 regionally unbiased voxel-based volumetry. Results: BF atrophy was
 associated with Thal amyloid phases (95% confidence interval -0.49 -
 -0.01, p=0.049) and presence of LB pathology (95% CI -0.54 - -0.06,
 p=0.015), as well as with the degree of LB pathology within the Nucleus
 basalis Meynert (NbM) (95% CI -0.54 - -0.07, p=0.025). These effects were
 no more significant after false discovery rate (FDR) correction.
 Hippocampal atrophy was significantly associated with the presence of
 TDP-43 pathology (95% CI 0.61 - -0.17, p=0.003; surviving FDR correction),
 in addition to dentate gyrus NFT load (95% CI -0.49 - 0.01, p = 0.044;
 uncorrected). Voxel-based analysis confirmed spatially restricted effects
 of Thal phases and presence of LB pathology on BF volume. Conclusions:
 These findings indicate that neuropathological correlates of regional
 atrophy differ substantially between different brain regions that are
 typically involved in AD-related neurodegeneration, including different
 susceptibilities to common co-morbid pathologies.
description: Supplementary Material Section describing the
 neuropathological assessments of the ADNI Neuropathology
 Core
DOI: 10.5061/dryad.m0cfxpp08
title: Genome-wide SNP analysis of Siamese cobra (Naja kaouthia) reveals the molecular basis of transitions between Z and W sex chromosomes and supports the presence of an ancestral super-sex chromosome in amniotes

description: Elucidation of the process of sex chromosome differentiation is necessary
 to understand the dynamics of evolutionary mechanisms in organisms. The
 Siamese cobra (Naja kaouthia) exhibits ZZ/ZW heteromorphic sex
 chromosomes. The W sex chromosome contains a large number of repeats and
 shares several amniote sex chromosomal linkages. In conjunction with
 recent advances in high-throughput sequencing, Diversity Arrays Technology
 (DArTseq™) provides an effective approach to identify sex-specific loci
 that are epoch-making, to understand the dynamics of molecular transitions
 between the Z and W sex chromosomes in a snake lineage. From a
 total of 543 perfectly sex-linked loci, 90 loci showed partial homology
 with several amniote sex chromosomal linkages, and 89 loci were homologous
 to transposable elements, which suggests that recombination suppression
 may be the crucial step in snake sex chromosome differentiation. Two loci
 were confirmed as W-specific nucleotides in females but not in males in
 the population examined by PCR amplification; one of the two loci (locus
 id: 100002617) was further amplified in females of the Indochinese
 spitting cobra (N. siamensis) but not in the other 22 snake species
 examined. Female-specific DArT markers were identified in Siamese cobra.
 These loci might result from a sex chromosome differentiation process
 between Z and W and involve putative sex-determination regions in Siamese
 cobra. Short sequences derived from DArTseq™ technology also shared
 linkage homologies among amniote sex chromosomes, which supports the
 hypothesis of an ancestral super-sex chromosome with overlaps of partial
 sex chromosomal linkages. The locus (id: 100002617) shared in N. kaouthia
 and N. siamensis, but among 22 other snake species, indicates inheritance
 from a common ancestor as synapomorphic loci in the Naja lineage. The ease
 of use of the DArT markers and DArTseq™ platform provides a useful
 strategy for future research on sex chromosome evolution in snakes.
DOI: 10.5061/dryad.mgqnk98wf
title: Data from: The chromatin-modifying protein HUB2 is involved in the regulation of lignin composition in xylem vessels

description: PIRIN2 (PRN2) was earlier reported to suppress S-type lignin accumulation
 of xylem vessels of Arabidopsis (Arabidopsis thaliana). In the present
 study we report yeast-two hybrid results supporting the interaction of
 PRN2 with HISTONE MONOUBIQUITINATION2 (HUB2) in Arabidopsis. HUB2 has been
 previously implicated in several plant developmental processes, but not in
 lignification. Interaction between PRN2 and HUB2 was verified by
 β-galactosidase enzymatic and co-immunoprecipitation assays. HUB2 promoted
 the deposition of S-type lignin in the secondary cell walls of both stem
 and hypocotyl tissues, as analysed by pyrolysis‐gas chromatography/mass
 spectrometry. Chemical fingerprinting of individual xylem vessel cell
 walls by Raman and Fourier Transform Infrared microspectroscopy supported
 the function of HUB2 in lignin deposition. These results, together with a
 genetic analyses of the hub2 prn2 double mutant, support antagonistic
 function of PRN2 and HUB2 in deposition of S-type lignin. Transcriptome
 analyses indicated the opposite regulation of the S-type lignin
 biosynthetic FERULATE-5-HYDROXYLASE1 by PRN2 and HUB2 as the underlying
 mechanism. PRN2 and HUB2 promoter activities co-localised in cells
 neighbouring the xylem vessel elements, suggesting that the S-type lignin
 promoting function of HUB2 is antagonized by PRN2 for the benefit of the
 G-type lignin enrichment of the neighbouring xylem vessel elements.
DOI: 10.5061/dryad.h70rxwdfr
title: Experimental manipulation of perceived predation risk and cortisol generates contrasting trait trajectories in plastic crucian carp

description: Most animals constitute potential prey and must
 respond appropriately to predator-mediated stress in order to
 survive. Numerous prey also adaptively tailor their response to
 the prevailing level of risk and stress imposed by their natural
 enemies, i.e. they adopt an inducible defence strategy. Predator
 exposure may activate the stress axis, and drive the expression
 of anti-predator traits that facilitate survival in a high-risk
 environment (the predation–stress hypothesis). Here, we
 quantified two key morphological anti-predator traits, body
 morphology and coloration in crucian carp
 following exposure (or not) to a predator (pike) as well
 as to experimental manipulation of physiological stress via
 implants containing either cortisol or a cortisol inhibitor. We
 found that predator-exposed fish expressed a deeper-bodied
 phenotype and darker body coloration as compared with non-exposed
 individuals. Skin analyses revealed that an increase in the
 amount of melanophores caused the dramatic colour change in
 predatorexposed fish. Increased melanization is costly, and the
 darker body coloration may act as an inducible defence against
 predation, via a conspicuous signal of the morphological defence
 or by crypsis towards dark environments and a nocturnal
 lifestyle. By contrast, the phenotype of individuals carrying
 cortisol implants did not mirror the phenotype of
 predator-exposed fish but instead exhibited opposite trajectories
 of trait change: a shallow-bodied morphology with a lighter body
 coloration as compared with sham-treated fish. The cortisol
 inhibitor did not influence the phenotype of fish i.e. neither
 body depth nor body coloration differed between this group and
 predator-exposed fish having a sham implant. However,
 our results illuminate a potential link between stress physiology
 and morphological defence expression.
description: Data for: Experimental manipulation of perceived predation risk
 and cortisol generates contrasting trait trajectories in plastic crucian
 carp
DOI: 10.82294/dvnmbyd0w
title: Observaciones semiestructuradas. Territorio: Cali. Eje medular: Agenciamiento. Sector: Cultura. Año: 2025

description: La capacidad de agencia o agenciamiento se entiende como las libertades y oportunidades que tiene un individuo para tomar decisiones y actuar en un contexto, transformando situaciones que afectan a su comunidad a nivel social y ambiental. Implica la capacidad de razonar críticamente y llevar a cabo acciones intencionales. En el ámbito de la educación artística y ambiental, esto se manifiesta en la capacidad de realizar el potencial creativo y de contribuir a la construcción de una realidad institucional o social (Maras, 2018; Katz-Buonicontro, 2018; García-Calvo y Garzón-Barragán, 2023).
DOI: 10.5061/dryad.vhhmgqnqd
title: Dasatinib for imatinib-resistant/intolerant patients with chronic phase chronic myeloid leukemia_database INFINITY_data_export

description: To compare long-term real-life results of dasatinib therapy to clinical
 trial data among  chronic phase chronic myeloid leukemia patients
 resistant or intolerant to imatinib, we retrospectively analysed data of
 118 patients treated in centres participating in the database
 INFINITY. Presented dataset was prepared as a data export from
 INFINITY database, comprehensive Czech database of patients with chronic
 myeloid leukemia treated in participated specialised
 hematological centers in the Czech Republic.
DOI: 10.25349/d96s3g
title: Mixed-species herding levels the landscape of fear

description: Prey antipredator behaviours are influenced by perceived predation risk in
 a landscape and social information gleaned from herd mates regarding
 predation risk. It is well documented that high-quality social information
 about risk can come from heterospecific herd mates. Here, we integrate
 social information with the landscape of fear to quantify how these
 landscapes are modified by mixed-species herding. To do this, we
 investigated zebra vigilance in single- and mixed-species herds across
 different levels of predation risk (lion vs. no lion), and assessed how
 they manage herd size and the competition-information trade-off associated
 with grouping behaviour. Overall, zebra performed higher vigilance in
 high-risk areas. However, mixed-species herding reduced vigilance levels.
 We estimate that zebra in single-species herds would have to feed for an
 additional ~35 minutes per day in low-risk areas and ~51 minutes in
 high-risk areas to compensate for the cost of higher vigilance.
 Furthermore, zebra benefitted from the competition-information trade-off
 by increasing the number of heterospecifics while keeping the number of
 zebra in a herd constant. Ultimately, we show that mixed-species herding
 reduces the effects of predation risk, whereby zebra in mixed-species
 herds, under high-predation risk, perform similar levels of vigilance
 compared to zebra in low-risk scenarios.