cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/72ce9d82ba8b5c5885c4122b927f3287
title: Satellite-derived estimate of artificial lakes in the Phoenix, Arizona, USA Metropolitan area (2000)

description: Artificial lakes are a prominent example of a local hydrogeomorphic modification in the Phoenix, Arizona metropolitan area. Although lakes are not a natural feature of Sonoran desert ecosystems, numerous artificial lakes are evident in the region. Here we attempt to quantify the heretofore unknown number and extent of artificial lakes. As official GIS layers from local and state agencies had significant misclassifications and omissions, we used two published land cover datasets to estimate the number and areal extent of artificial lakes. We discovered that there are 908-1,390 lakes in the Phoenix area, with the number varying according to level of aggregation. Accurate data on the extent and distribution of these designed ecosystems is vital for water-resources planning and stormwater management. Results, discussion, and additional details are available in document DOI 10.1007/s11252-011-0208-1.
DOI: 10.25934/00004510.1
title: IPD datapackage for study 'A Randomized, Double-Blind, Placebo-Controlled, Phase 3 Study Evaluating the Efficacy and Safety of Baricitinib (LY3009104) in Patients With Moderately to Severely Active Rheumatoid Arthritis Who Have Had an Inadequate Response to Tumor Necrosis Factor Inhibitors' included in Research Request: 'Predictors of exposure, therapeutic and adverse effects of certolizumab pegol, baricitinib and tocilizumab used in the treatment of rheumatoid arthritis.'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00004511.1
title: IPD datapackage for study 'A Randomized, Double-Blind, Placebo-Controlled, Phase 3 Study to Evaluate the Efficacy and Safety of Baricitinib (LY3009104) in Patients With Inadequate Response to Conventional Disease-Modifying Antirheumatic Drugs With Moderately to Severely Active Rheumatoid Arthritis' included in Research Request: 'Predictors of exposure, therapeutic and adverse effects of certolizumab pegol, baricitinib and tocilizumab used in the treatment of rheumatoid arthritis.'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00004509.1
title: IPD datapackage for study 'A Randomized, Double-Blind, Active-Controlled, Phase 3 Study to Evaluate the Efficacy and Safety of Baricitinib (LY3009104) in Patients With Moderately to Severely Active Rheumatoid Arthritis Who Have Had Limited or No Treatment With Disease-Modifying Antirheumatic Drugs' included in Research Request: 'Predictors of exposure, therapeutic and adverse effects of certolizumab pegol, baricitinib and tocilizumab used in the treatment of rheumatoid arthritis.'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00004508.1
title: IPD datapackage for study 'A Randomized, Double-Blind, Placebo- and Active-Controlled, Phase 3 Study Evaluating the Efficacy and Safety of Baricitinib in Patients With Moderately to Severely Active Rheumatoid Arthritis Who Have Had an Inadequate Response to Methotrexate Therapy' included in Research Request: 'Predictors of exposure, therapeutic and adverse effects of certolizumab pegol, baricitinib and tocilizumab used in the treatment of rheumatoid arthritis.'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00004498.1
title: IPD datapackage for study 'A Randomized, Double-Blind, Placebo-Controlled, Dose-Ranging, Parallel-Group, Phase 2 Study of Baricitinib (LY3009104) in Japanese Patients With Active Rheumatoid Arthritis on Background Methotrexate Therapy' included in Research Request: 'Predictors of exposure, therapeutic and adverse effects of certolizumab pegol, baricitinib and tocilizumab used in the treatment of rheumatoid arthritis.'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00004490.1
title: IPD datapackage for study 'A Randomized, Double-Blind, Placebo-Controlled, Dose-Ranging, Parallel-Group, Phase 2b Study of LY3009104 in Patients With Active Rheumatoid Arthritis on Background Methotrexate Therapy' included in Research Request: 'Predictors of exposure, therapeutic and adverse effects of certolizumab pegol, baricitinib and tocilizumab used in the treatment of rheumatoid arthritis.'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.26300/y2m9-mk21
title: Data from “Suppressed Daytime Convection over the Amazon River”
DOI: 10.25345/c5416c
title: MassIVE MSV000085925 - Bleached coral and symbiont cultures
title: A collection of methanol extracted coral metabolomes and isolated symbiont cultures of both D and C clade.
DOI: 10.25500/edata.bham.00000529
title: Research data supporting "Effects of calf muscle conditioning upon ankle proprioception"

description: This excel file contains basic data from two proprioception experiments. This includes ankle position for both experiments (Stretch/contract and Cooling), in addition to muscle twitch properties and skin temperature from the cooling experiment.
DOI: 10.21227/vjpw-q006
title: PIL-park

description: Parking Slot Detection datasetangle, type, and location of each parking slot
DOI: 10.21227/g86w-yt58
title: PIL-park

description: Parking Slot Detection datasetangle, type, and location of each parking slot
DOI: 10.5281/zenodo.3975958
title: Chromosight benchmarks and processed data

description: Input data and scripts required to rerun chromosight's benchmarks and associated figures from the manuscript, as well as output results in text format. The record contains 3 tarballs corresponding to two different benchmarks and various processed files. Each tarball contains the scripts, input and output data of its benchmark: <strong>Performance benchmark:</strong> This benchmark is contained in "20200406_benchmark_chromosight_performance.tar.gz" and compares chromosight running time and RAM use with 2 other softwares. This benchmark is run on a real high resolution human Hi-C matrix with different subsampling values. Benchmark scripts are expected to be run on a regular laptop or desktop. <strong>Results benchmark:</strong> This benchmark is contained in "20200406_benchmark_chromosight_results.tar.gz" and assess chromosight's ability to detect chromatin loop patterns on Hi-C contact maps. Chromosight is compared to 4 other softwares. For each software, precision, recall (=sensitivity) and F1 scores are measured using 2000 small synthetic Hi-C matrices with known loop coordinates. Each software is run with a range of 50-200 parameter combinations for all data. Scripts to run this benchmark are written to run as a job array on a SLURM computing cluster to reduce compute time. <strong>Processed data files</strong> Intermediate and output files used throughout the manuscript. This includes contact matrices in cool format, genomic intervals in BED or BED2D format and loop calls from public data for different softwares.
DOI: 10.5517/ccdc.csd.cc23pl7n
title: CCDC 1957161: Experimental Crystal Structure Determination

description: Related Article: Yen H. Pham, Viktor A. Trush, Albano N. Carneiro Neto, Maria Korabik, Jerzy Sokolnicki, Marek Weselski, Oscar L. Malta, V. M. Amirkhanov, Paula Gawryszewska|2020|J.Mater.Chem.C|8|9993|doi:10.1039/D0TC01445A
DOI: 10.5517/ccdc.csd.cc23pps9
title: CCDC 1957271: Experimental Crystal Structure Determination

description: Related Article: Yen H. Pham, Viktor A. Trush, Albano N. Carneiro Neto, Maria Korabik, Jerzy Sokolnicki, Marek Weselski, Oscar L. Malta, V. M. Amirkhanov, Paula Gawryszewska|2020|J.Mater.Chem.C|8|9993|doi:10.1039/D0TC01445A
DOI: 10.5517/ccdc.csd.cc23ppwd
title: CCDC 1957274: Experimental Crystal Structure Determination

description: Related Article: Yen H. Pham, Viktor A. Trush, Albano N. Carneiro Neto, Maria Korabik, Jerzy Sokolnicki, Marek Weselski, Oscar L. Malta, V. M. Amirkhanov, Paula Gawryszewska|2020|J.Mater.Chem.C|8|9993|doi:10.1039/D0TC01445A
DOI: 10.5517/ccdc.csd.cc23tckw
title: CCDC 1960798: Experimental Crystal Structure Determination

description: Related Article: N. M. Mews, M. Reimann, G. Hörner, M. Kaupp, H. Schubert, A. Berkefeld|2020|Dalton Trans.|49|9735|doi:10.1039/D0DT02237C
DOI: 10.5517/ccdc.csd.cc23tcmy
title: CCDC 1960800: Experimental Crystal Structure Determination

description: Related Article: N. M. Mews, M. Reimann, G. Hörner, M. Kaupp, H. Schubert, A. Berkefeld|2020|Dalton Trans.|49|9735|doi:10.1039/D0DT02237C
DOI: 10.5517/ccdc.csd.cc23tcp0
title: CCDC 1960802: Experimental Crystal Structure Determination

description: Related Article: N. M. Mews, M. Reimann, G. Hörner, M. Kaupp, H. Schubert, A. Berkefeld|2020|Dalton Trans.|49|9735|doi:10.1039/D0DT02237C
DOI: 10.5517/ccdc.csd.cc23tcr2
title: CCDC 1960804: Experimental Crystal Structure Determination

description: Related Article: N. M. Mews, M. Reimann, G. Hörner, M. Kaupp, H. Schubert, A. Berkefeld|2020|Dalton Trans.|49|9735|doi:10.1039/D0DT02237C
DOI: 10.5517/ccdc.csd.cc24718q
title: CCDC 1972972: Experimental Crystal Structure Determination

description: Related Article: Ramling S. Mathpati, Srinivas Dharavath, Nikhil Kumar, Vikas D. Ghule, Avijit Kumar Paul, Ram Kumar Tittal|2020|CrystEngComm|22|4842|doi:10.1039/D0CE00772B
DOI: 10.5517/ccdc.csd.cc24719r
title: CCDC 1972973: Experimental Crystal Structure Determination

description: Related Article: Ramling S. Mathpati, Srinivas Dharavath, Nikhil Kumar, Vikas D. Ghule, Avijit Kumar Paul, Ram Kumar Tittal|2020|CrystEngComm|22|4842|doi:10.1039/D0CE00772B
DOI: 10.5517/ccdc.csd.cc2471bs
title: CCDC 1972974: Experimental Crystal Structure Determination

description: Related Article: Ramling S. Mathpati, Srinivas Dharavath, Nikhil Kumar, Vikas D. Ghule, Avijit Kumar Paul, Ram Kumar Tittal|2020|CrystEngComm|22|4842|doi:10.1039/D0CE00772B
DOI: 10.5517/ccdc.csd.cc2471ct
title: CCDC 1972975: Experimental Crystal Structure Determination

description: Related Article: Ramling S. Mathpati, Srinivas Dharavath, Nikhil Kumar, Vikas D. Ghule, Avijit Kumar Paul, Ram Kumar Tittal|2020|CrystEngComm|22|4842|doi:10.1039/D0CE00772B
DOI: 10.5517/ccdc.csd.cc2471dv
title: CCDC 1972976: Experimental Crystal Structure Determination

description: Related Article: Ramling S. Mathpati, Srinivas Dharavath, Nikhil Kumar, Vikas D. Ghule, Avijit Kumar Paul, Ram Kumar Tittal|2020|CrystEngComm|22|4842|doi:10.1039/D0CE00772B
DOI: 10.5517/ccdc.csd.cc2471fw
title: CCDC 1972977: Experimental Crystal Structure Determination

description: Related Article: Ramling S. Mathpati, Srinivas Dharavath, Nikhil Kumar, Vikas D. Ghule, Avijit Kumar Paul, Ram Kumar Tittal|2020|CrystEngComm|22|4842|doi:10.1039/D0CE00772B
DOI: 10.5517/ccdc.csd.cc24fj15
title: CCDC 1979196: Experimental Crystal Structure Determination

description: Related Article: Anne Westermeyer, Quentin Llopis, Gérard Guillamot, Phannarath Phansavath and Virginie Ratovelomanana-Vidal|2020|Synlett|31|1172|doi:10.1055/s-0039-1690885
DOI: 10.5517/ccdc.csd.cc24fj26
title: CCDC 1979197: Experimental Crystal Structure Determination

description: Related Article: Anne Westermeyer, Quentin Llopis, Gérard Guillamot, Phannarath Phansavath and Virginie Ratovelomanana-Vidal|2020|Synlett|31|1172|doi:10.1055/s-0039-1690885
DOI: 10.5281/zenodo.3893374
title: Solar Eclipse 2017 recordings of medium-wave AM broadcast band from State College, PA, U.S.A.

description: recorded by Brett Saylor, W3SWL location recorded: 40° 47' 36" N, 77° 51'37" W These data files are recordings of the entire medium wave broadcast band (535-1705kHz) from 18:08:17UTC to 19:28:16UTC (at this location, the eclipse lasted from: 1714 UTC (start) - 1838 UTC (maximum) - 1956 UTC (end). ) Data files are .wav format, but the archived files are .zip, with one or two .wav files packaged together in each .zip file. Antenna: Corner-fed broadband unidirectional loop antenna, 36' long x 16' tall, using Wellbrook FLG-100 amplifier (https://www.wellbrook.uk.com/loopantennas/Components), and 1000 ohm termination , aimed at 180 degrees Receiver: Microtelecom Perseus SDR (http://microtelecom.it/perseus/) with no front end attenuation, center frequency set at 1000kHz, recording 1600kHz wide passband, using Perseus software.
description: On the AM broadcast band (535-1705kHz), there are roughly two modes of broadcast station signal coverage, one of which occurs in the daytime, and the other at night. During the day time, signals are propagated by ground wave and and not usually heard well beyond 150km from the transmitter. However, at night, an absorptive region in the ionosphere, the D-layer, disappears, allowing signals to refract off higher regions of the ionosphere, and to be heard hundreds and even thousands, of kilometers away from the transmitter. During the solar eclipse of 21 August 2017, signals were observed changing from daytime to nighttime mode and then back again as the moon's shadow moved across the continental USA. The radio stations in this band use amplitude modulation, which requires a strong stable carrier wave, well suited for observing changes in signal strength over a time period. Included in these files is one provided by Microtelecom ("Perseusv5demo.exe") for playback of the .wav files, plus a help file, "PerseusV5QuickTuningGuide.pdf". As well, there is a reference file to assist in identifying signals ("canusa-Jan2019.pdf"). Finally, there is set of instructions for using the software, including instructions for using "Perseusv5demo.exe" to extract a time series of signal power for an individual radio station's signal ("Using Perseusv5demo to create signal strength time series-W3SWL.pdf"). Finally, referencing the article archived at http://hamsci.org/sites/default/files/publications/2019_am-eclipse2017_hall-patch.pdf , will give the user of these files an idea of how radio reception datasets from different locations can be used to compare the effects that the solar eclipse had on radio propagation.
DOI: 10.5281/zenodo.3893373
title: Solar Eclipse 2017 recordings of medium-wave AM broadcast band from State College, PA, U.S.A.

description: recorded by Brett Saylor, W3SWL location recorded: 40° 47' 36" N, 77° 51'37" W These data files are recordings of the entire medium wave broadcast band (535-1705kHz) from 18:08:17UTC to 19:28:16UTC (at this location, the eclipse lasted from: 1714 UTC (start) - 1838 UTC (maximum) - 1956 UTC (end). ) Data files are .wav format, but the archived files are .zip, with one or two .wav files packaged together in each .zip file. Antenna: Corner-fed broadband unidirectional loop antenna, 36' long x 16' tall, using Wellbrook FLG-100 amplifier (https://www.wellbrook.uk.com/loopantennas/Components), and 1000 ohm termination , aimed at 180 degrees Receiver: Microtelecom Perseus SDR (http://microtelecom.it/perseus/) with no front end attenuation, center frequency set at 1000kHz, recording 1600kHz wide passband, using Perseus software.
description: On the AM broadcast band (535-1705kHz), there are roughly two modes of broadcast station signal coverage, one of which occurs in the daytime, and the other at night. During the day time, signals are propagated by ground wave and and not usually heard well beyond 150km from the transmitter. However, at night, an absorptive region in the ionosphere, the D-layer, disappears, allowing signals to refract off higher regions of the ionosphere, and to be heard hundreds and even thousands, of kilometers away from the transmitter. During the solar eclipse of 21 August 2017, signals were observed changing from daytime to nighttime mode and then back again as the moon's shadow moved across the continental USA. The radio stations in this band use amplitude modulation, which requires a strong stable carrier wave, well suited for observing changes in signal strength over a time period. Included in these files is one provided by Microtelecom ("Perseusv5demo.exe") for playback of the .wav files, plus a help file, "PerseusV5QuickTuningGuide.pdf". As well, there is a reference file to assist in identifying signals ("canusa-Jan2019.pdf"). Finally, there is set of instructions for using the software, including instructions for using "Perseusv5demo.exe" to extract a time series of signal power for an individual radio station's signal ("Using Perseusv5demo to create signal strength time series-W3SWL.pdf"). Finally, referencing the article archived at http://hamsci.org/sites/default/files/publications/2019_am-eclipse2017_hall-patch.pdf , will give the user of these files an idea of how radio reception datasets from different locations can be used to compare the effects that the solar eclipse had on radio propagation.
DOI: 10.25422/azu.data.12578603
title: Data and Code for Enabling Authors to Produce Computable Phenotype Measurements Usability Studies on the Software Prototype "Measurement Recorder"

description: The dataset contains the data and codes for the study called "Enabling Authors to Produce Computable Phenotype Measurements: Usability Studies on the Software Prototype “Measurement Recorder"". The data include user logs of participants interactions with the software and their responses to questionnaires.<br><br><i>For inquiries regarding the contents of this dataset, please contact the Corresponding Author listed in the README.txt file. Administrative inquiries (e.g., removal requests, trouble downloading, etc.) can be directed to data-management@arizona.edu</i><br>
DOI: 10.25422/azu.data.12578603.v1
title: Data and Code for Enabling Authors to Produce Computable Phenotype Measurements Usability Studies on the Software Prototype "Measurement Recorder"

description: The dataset contains the data and codes for the study called "Enabling Authors to Produce Computable Phenotype Measurements: Usability Studies on the Software Prototype “Measurement Recorder"". The data include user logs of participants interactions with the software and their responses to questionnaires.<br><br><i>For inquiries regarding the contents of this dataset, please contact the Corresponding Author listed in the README.txt file. Administrative inquiries (e.g., removal requests, trouble downloading, etc.) can be directed to data-management@arizona.edu</i><br>
DOI: 10.25345/c5074f
title: MassIVE MSV000085926 - Elongin A regulates transcription in vivo through enhanced RNA polymerase processivity
title: Elongin is an RNA polymerase II (RNAPII)-associated factor that has been shown to stimulate transcriptional elongation in vitro. The Elongin complex is thought to be required for transcriptional induction in response to cellular stimuli and to ubiquitinate RNAPII in response to DNA damage. Yet the impact of the Elongin complex on transcription in vivo has not been well studied. Here, we performed comprehensive studies of the role of Elongin A, the largest subunit of the Elongin complex, on RNAPII transcription genome-wide. In an effort to explore regulatory roles for Elongin A, we performed IP-MS. We constructed a DLD1 cell line expressing Flag-tagged Elongin A at endogenous levels and performed anti-Flag immuno-purification of solubilized chromatin followed by analysis of binding partners by mass spectrometry in triplicates. We identified a large group of Elongin A-associated proteins. We confirmed a subset of possible interacting proteins by Co-IP and western blotting. Consistent with previous studies, we identified RNA Pol II subunits and proteins related to transcription elongation and RNA processing. Among the top hits, we identified nearly all subunits of the PAF1 complex, except for RTF1, which does not stably associate with mammalian PAF1. Concordantly, in our previous PAF1 proteomic study, Elongin A was also among the top hits. We also identified several subunits of the Integrator complex, a multi-subunit complex that has been shown to participate in enhancer RNA (eRNA) processing, a finding consistent with our conclusion that Elongin A localizes to potential enhancers. Collectively, our results suggest that Elongin A stably interacts with RNAPII and the transcription machinery on chromatin. Taken together, our studies suggest that Elongin A associates with the transcription machinery at actively transcribed genomic regions and may be involved in the release of paused RNAPII. However, Elongin A does not appear to be critical for maintaining transcription elongation rates in vivo.
DOI: 10.5517/ccdc.csd.cc23ptzm
title: CCDC 1957401: Experimental Crystal Structure Determination

description: Related Article: Yen H. Pham, Viktor A. Trush, Albano N. Carneiro Neto, Maria Korabik, Jerzy Sokolnicki, Marek Weselski, Oscar L. Malta, V. M. Amirkhanov, Paula Gawryszewska|2020|J.Mater.Chem.C|8|9993|doi:10.1039/D0TC01445A
DOI: 10.5517/ccdc.csd.cc24yzlp
title: CCDC 1995023: Experimental Crystal Structure Determination

description: Related Article: Wei-Sian Li, Ting-Shen Kuo, Meng-Chi Hsieh, Ming-Kang Tsai, Ping-Yu Wu, Hsyueh-Liang Wu|2020|Org.Lett.|22|5675|doi:10.1021/acs.orglett.0c02069
DOI: 10.5517/ccdc.csd.cc24z1kr
title: CCDC 1995084: Experimental Crystal Structure Determination

description: Related Article: Nittert Marinus, Nabil Tahiri, Margherita Duca, L. M. C. Marc Mouthaan, Simona Bianca, Marco van den Noort, Bert Poolman, Martin D. Witte, Adriaan J. Minnaard|2020|Org.Lett.|22|5622|doi:10.1021/acs.orglett.0c01986
DOI: 10.5517/ccdc.csd.cc24z1pw
title: CCDC 1995088: Experimental Crystal Structure Determination

description: Related Article: Nittert Marinus, Nabil Tahiri, Margherita Duca, L. M. C. Marc Mouthaan, Simona Bianca, Marco van den Noort, Bert Poolman, Martin D. Witte, Adriaan J. Minnaard|2020|Org.Lett.|22|5622|doi:10.1021/acs.orglett.0c01986