cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/yc7ht4cgnc.1
title: Global population analysis of HLA class I affinity toward proteasome-generated peptides from five main SARS-CoV-2 spike protein RBD variants

description: Global data on relative abundance of SARS-CoV-2 S protein RBD peptides in samples, generated by human constitutive (c20S) and immune (i20S) proteasomes, calculated HLA class I EL ranks, percentage of HLA class I alleles coverage, average HLA class I haplotype protective index and percentage of individuals from 28,104 with at least 1 positive HLA class I allele in haplotype. List of 305 HLA class I alleles, covering 98% haplotypes of 28,104 individuals deposited in Allele Frequency Net Database. Referencing of proteasome-generated N-terminally extended peptides to core HLA class I CD8+ T cell epitopes listed in the Immune Epitope Database (IEDB). Convoluted relative abundance of SARS-CoV-2 S protein RBD peptides in samples, generated by c20S and i20S proteasomes. Spearman correlation between HLA class I haplotypes positive for two major SARS-CoV-2 S protein RBD epitopes in different populations and COVID-19-related deaths/cases ratio. Analysis of population frequency of SARS-CoV-2 S protein RBD epitopes-binding HLA class I molecules in different countries. Total amount of COVID-19-related deaths/cases in different countries before and after 12/01/2021. Interactive plot representing relative abundance of SARS-CoV-2 S protein RBD peptides in samples, generated by c20S and i20S proteasomes with indication of positive HLA class I alleles and respective EL ranks. Interactive plot with searchable interface representing sequence distribution of SARS-CoV-2 S protein RBD peptides, generated by proteasomes, with indication of positive HLA class I alleles and respective EL ranks.
DOI: 10.17632/9v4f7v5jxs.1
title: LDHU3_14.1750

description: Serine hydroxymethyltranferase | SHMT-S; Leishmania donovani (HU3 strain)
DOI: 10.17632/nbdgt7jxhk.1
title: LINF_360038800

description: fibrillarin | NOP1
Leishmania infantum (strain JPCM5)
DOI: 10.17632/yhdjy792tj.1
title: LINF_350029900

description: Rrp7; Leishmania infantum (strain JPCM5)
DOI: 10.17632/f3sjwkbycs.1
title: LINF_350028300

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/5666ws5vnx.1
title: LINF_130014600

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/t66gybk9tp.1
title: LINF_130014800

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/sfd54xz9ps.1
title: SEM-EDS Particulate matter (PM2.5)

description: Current studies are focused on the use of multiple analytical techniques to assist in the characterization of particulate matter to gain a better understanding of the relationship between anthropogenic emission sources, ambient PM2.5 and health effects. SEM-EDS characterization of PM2.5 colected in filters was performed to analyze the chemical composition of PM and determine the emission source.
DOI: 10.17632/t55p9rdtmn.1
title: LINF_130014200

description: glycosyl transferase-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/3t5vxjhntx.1
title: LINF_020010000

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/kj95dg5vm4.1
title: Advanced 3D printing of graphene oxide nanocomposites: A new initiator system for improved dispersion and mechanical performance

description: The integration of nanoparticles, such as Graphene Oxide (GO), with photo-curable polymers in 3D printing has garnered significant interest in recent years due to the potential to create functional nanocomposite materials. This study explores the challenges of achieving optimal dispersion of GO nanoparticles within the polymer matrix and the crucial role of photoinitiators in overcoming these limitations. Traditional photoinitiators, like TPO, commonly used for GO/polymer resins, have raised concerns about high toxicity and limited sensitivity to visible light, prompting the need for alternative initiating systems. In this research, we propose a two-component initiator system based on bis-(4-t-butylphenyl)iodonium hexafluorophosphate and photosensitizer N-{4-[(E)-2-(pentafluorophenyl)ethenyl]phenyl}-2,1,3-benzothiadiazol-4-amine (IOD/PS1) as a promising solution. This new initiating system not only ensures a more environment-friendly resin but also exhibits enhanced polymerization kinetics and compatibility with GO nano fillers. This study investigated the effect of the addition of nano-GO on the kinetics of the radical photopolymerization process, 3D printing, and final mechanical and thermal properties of the received products. TPO and PEGDA/H2O were used as reference systems. In addition, a new two-component initiator system was synthesized, which is an interesting alternative to the commercial TPO initiator that is widely employed in additive techniques. This publication presents the research procedure involving various techniques: real-time FTIR and photoreology. In addition, the possibility of creating three-dimensional structures from the newly developed photo-curable resins was verified. Finally, the morphologies and mechanical properties of the resulting 3D structures were compared. Within the work, we demonstrate the advantages of the two-component initiator in achieving uniform distribution of GO and fabricating high-quality materials. By applying IOD/PS1 initiating system we facilitated a more controlled and efficient polymerization process, reducing shrinkage-induced stresses and enhancing interlayer bonding. The result was the fabrication of high-quality, well-dispersed materials with tailored properties suitable for various applications, particularly in the biomedical field.
DOI: 10.17632/zj4x3426hv.1
title: Multiprotein bridging factor 1 is required for robust activation of the integrated stress response on collided ribosomes

description: The multiprotein bridging factor 1 (Mbf1) proteins comprise a family of conserved eukaryotic proteins thought to mediate the activity of stress-induced transcription factors. In yeast, Mbf1 has been proposed to function in the integrated stress response (ISR) by mediating a direct interaction between the basal transcription machinery and the process’s key effector Gcn4. Curiously, mounting recent evidence has strongly suggested that the factor (and its human homologue) is recruited to collided ribosomes, the very signal newly recognized to activate the ISR. Here we provide data that connect these otherwise seemingly disparate functions of Mbf1. Our findings reveal that Mbf1 functions as a core factor in the ISR process, responding early to stress and mediating the activation of Gcn2. We further show that the factor serves no role as a transcriptional coactivator of Gcn4; instead, Mbf1 and its human homologue are required for optimal stress-induced eIF2 phosphorylation and downstream de-repression of GCN4/ATF4 translation. Detailed mutational and biochemical analysis, together with a cryo-EM structure of the factor bound to collided ribosomes, shows that Mbf1’s contribution to the ISR is mediated through its interaction with ribosomes. Collectively, our data establish that Mbf1 functions in signaling by acting as a direct sensor of stress-induced ribosome collisions.
DOI: 10.15468/dl.ne5yyw
title: Occurrence Download

description: A dataset containing 42039 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-77.50484 39.61987, -77.41761 39.61987, -77.41761 39.69206, -77.50484 39.69206, -77.50484 39.61987))"
 ]
}

 The dataset includes 42039 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072810-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7282/fp8k-cg20
title: An analysis of the accuracy of photo-based plant identification applications on 55 tree species, supplementary files

description: The following image files are assembled for the purpose of a study to compare the accuracy of phone applications for field tree identification in New Jersey. These files are openly available.
Citation: Schmidt, R., Casario, B., Zipse, P., Grabosky, J. 2021. An analysis of the accuracy of photo-based plant identification applications on 55 tree species. Arboriculture & Urban Forestry (48).
The Files are labeled under the following convention: e.g. QUAL_L1_RS.jpg. QUAL represents the species in the image wherein: QU: the first 2 letters represent the genus (i.e., QU for Quercus); AL: The first 2 letters of the specific epithet (i.e., AL for "alba" inQuercus alba). Where there is also a number included after the four-letter code derived from the species name, this indicates that there are multiple species in the database with the same first two letters in both the genus and specific epithet (e.g., Acer saccharinum and Acer saccharum). In this case, the species that comes first alphabetically will have the lowest digit directly following the four-digit code (e.g., ACSA2 for Acer saccharinum and ACSA3 for Acer saccharum). These label conventions for plant species identification described above are defined using the species codes as outlined by the USDA Plants Database out of the United States Department of Agriculture Natural Resources Conservation Service. Where a species code was not available through the USDA Plants Database at the time of publication, species codes were created following this same procedure. RS represents initials of the photo author wherein: RS = Ryan J. Schmidt; BC = Brianna M. Casario; PZ = Pamela C. Zipse; JG = Jason C. Grabosky. L represents the plant organ type wherein: L = Leaf; B = Bark. 1 represents the replicate number of the image in a range of 1 to 4 used in the study.
DOI: 10.15468/dl.8sw969
title: Occurrence Download

description: A dataset containing 35097 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-113.97991 35.75009,-111.58705 35.75009,-111.58705 36.86569,-113.97991 36.86569,-113.97991 35.75009))"
 ]
}

 The dataset includes 35097 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072811-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7p2tq4
title: Occurrence Download

description: A dataset containing 23326 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-110.94843 43.53793,-110.42274 43.53793,-110.42274 44.08401,-110.94843 44.08401,-110.94843 43.53793))"
 ]
}

 The dataset includes 23326 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072813-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28195598.v1
title: Lactobacillus sanfrancisensis wgMLST scheme.

description: Backup of the BioNumerics Lactobacillus sanfrancisensis wgMLST scheme.
DOI: 10.15468/dl.pyqqrt
title: Occurrence Download

description: A dataset containing 36435 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Thamnophilidae"
 ]
}

 The dataset includes 36435 records from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072812-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ahcbk8
title: Occurrence Download

description: A dataset containing 6487 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-114.35607 38.81844,-114.13247 38.81844,-114.13247 39.06475,-114.35607 39.06475,-114.35607 38.81844))"
 ]
}

 The dataset includes 6487 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072814-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/mqwr4e
title: UnB | Amostragem de florestas secundárias inundáveis no Cerrado (Jalapão, Brasil).

description: Dados de amostragem de florestas secundárias em várias UC do Jalapão obtidos para o projeto de doutorado de Ecologia Vegetalda Universidade de Brasília
"Foice, machado, fogo e enxada: Práticas de cultivo e sucessão secundária em matas de galera inundáveis do Cerrado após agricultura itinerante".
DOI: 10.17028/rd.lboro.28219961
title: Supplementary information files for "What’s in a name? A systematic review and meta-analysis to assess the effectiveness of non-medical amplification devices in adults with mild and moderate hearing losses"

description: Supplementary files for article "What’s in a name? A systematic review and meta-analysis to assess the effectiveness of non-medical amplification devices in adults with mild and moderate hearing losses"<b>Objective</b>: To assess non-medical amplification devices in adults with mild-to-moderate hearing loss, and the impact of device features on outcomes.<b>Design</b>: A prospectively registered systematic review.<b>Study sample</b>: Ten studies evaluating personal sound amplification products (PSAPs), and four evaluating smartphone amplification applications (or apps). Devices were classified as “premium” or “basic” based on the number of compression channels (≥16 or &lt;16, respectively).<b>Results</b>: Meta-analyses showed that premium PSAPs improved speech intelligibility in noise performance compared to unaided, whereas basic PSAPs and smartphone apps did not. Premium PSAPs performed better than basic hearing aids. Premium hearing aids performed better than premium and basic PSAPs, smartphone apps, and basic hearing aids. Although data could not be pooled, similar findings were also found for quality of life, listening ability, cognition, feasibility, and adverse effects.<b>Conclusions</b>: Premium PSAPs appear to be an effective non-medical amplification device for adults with mild-to-moderate hearing loss. Given the overlap in features available, it may be that this is a key consideration when drawing comparisons between devices, rather than the device being named a PSAP or hearing aid. Nevertheless, the extent to which PSAPs are effective without audiological input remains to be determined.© The Authors, CC BY-NC-ND 4.0
DOI: 10.17028/rd.lboro.28219961.v1
title: Supplementary information files for "What’s in a name? A systematic review and meta-analysis to assess the effectiveness of non-medical amplification devices in adults with mild and moderate hearing losses"

description: Supplementary files for article "What’s in a name? A systematic review and meta-analysis to assess the effectiveness of non-medical amplification devices in adults with mild and moderate hearing losses"<b>Objective</b>: To assess non-medical amplification devices in adults with mild-to-moderate hearing loss, and the impact of device features on outcomes.<b>Design</b>: A prospectively registered systematic review.<b>Study sample</b>: Ten studies evaluating personal sound amplification products (PSAPs), and four evaluating smartphone amplification applications (or apps). Devices were classified as “premium” or “basic” based on the number of compression channels (≥16 or &lt;16, respectively).<b>Results</b>: Meta-analyses showed that premium PSAPs improved speech intelligibility in noise performance compared to unaided, whereas basic PSAPs and smartphone apps did not. Premium PSAPs performed better than basic hearing aids. Premium hearing aids performed better than premium and basic PSAPs, smartphone apps, and basic hearing aids. Although data could not be pooled, similar findings were also found for quality of life, listening ability, cognition, feasibility, and adverse effects.<b>Conclusions</b>: Premium PSAPs appear to be an effective non-medical amplification device for adults with mild-to-moderate hearing loss. Given the overlap in features available, it may be that this is a key consideration when drawing comparisons between devices, rather than the device being named a PSAP or hearing aid. Nevertheless, the extent to which PSAPs are effective without audiological input remains to be determined.© The Authors, CC BY-NC-ND 4.0
DOI: 10.17863/cam.96375
title: Research data supporting "Designing and prototyping of a reconfigurable segmented fan concrete shell as a flooring system"

description: This data set contains test data for 3 segmented fan concrete shells (MN1, MN1M, and MN2M) loaded under asymmetrical point loads. Load-displacement data are provided as CSV files for each of the test specimens. This data was obtained from the data acquisition system which was connected to the hydraulic jack for the loading data and the LED tracker camera system for the loading plate displacement. Output from linearly varying displacement transducers (LVDTs) and strain gauges applied to the steel ties for test specimen MN2M is included in the dataset as a CSV file. The LVDTs were placed at mid span of each edge to track the vertical displacement of the shell edges. The strain gauges were used to track the strain in the ties which resolved the horizontal thrusts of the shell.
DOI: 10.5518/1323
title: Datasets associated with 'Modelling Network Formation in Folded Protein Hydrogels by Cluster Aggregation Kinetics'

description: Datasets containing data associated with the paper “Modelling Network Formation in Folded Protein Hydrogels by Cluster Aggregation Kinetics”. Dataset 1 contains data file outputs per simulation run, Dataset 2 contains finite size test data outputs and Dataset 3 contains pore size data outputs.
DOI: 10.25625/ohxga4/d4z9jl
title: second.csv

description: :unav
DOI: 10.25625/ohxga4/gqqqfk
title: first.csv

description: First data set in the paper
DOI: 10.25625/ohxga4/kwm1gg
title: ttest.csv

description: :unav
DOI: 10.25625/ohxga4/ngegxx
title: 241004 Generation of artificial datasets repository.R

description: :unav
DOI: 10.25625/ohxga4
title: Artificial data for Generative AI and Statistics

description: Data sets and generating R code for reproduction of the results in "The Use of Generative AI in Statistical Data Analysis"
DOI: 10.25625/ohxga4/ni4pra
title: 241028 Documentation of the analyses of the data sets with ChatGPT.pdf

description: :unav
DOI: 10.25625/ohxga4/xar4t0
title: linreg.csv

description: :unav
DOI: 10.17028/rd.lboro.21609765
title: Supplementary information files for The role of cognitive and applied executive function skills in learning rational number knowledge: Data

description: © the authors, CC-BY NC 4.0Data associated with the manuscript "The role of cognitive and applied executive function skills in learning rational number knowledge"The dataset contains measures of executive functions (visuospatial working memory, inhibition, shifting, following instructions, classroom behaviour) taken at a single timepoint as well as measures of rational number knowledge and rational number estimation taken at three timepoints from 88 children aged 8-9-years.
DOI: 10.17028/rd.lboro.21609765.v1
title: Supplementary information files for The role of cognitive and applied executive function skills in learning rational number knowledge: Data

description: © the authors, CC-BY NC 4.0Data associated with the manuscript "The role of cognitive and applied executive function skills in learning rational number knowledge"The dataset contains measures of executive functions (visuospatial working memory, inhibition, shifting, following instructions, classroom behaviour) taken at a single timepoint as well as measures of rational number knowledge and rational number estimation taken at three timepoints from 88 children aged 8-9-years.
DOI: 10.6073/pasta/c7f61e65a8a5b9dd356db3874733d676
title: PIE LTER 15-minute OTT RLS measurements of water column depth at 15 minute intervals in the lower Plum Island Sound off the Ipswich Bay Yacht Club pier, Ipswich, MA, year 2024.

description: Measurements of water column depth at 15 minute intervals in Plum Island Sound at the Ipswich Bay Yacht Club, for year 2024. An OTT radar level sensor (RLS) installed September 20, 2011 out of the water under the concrete pad on the Ipswich Bay Yacht Club pier, Ipswich, MA. The RLS was mounted so that continuous year round measurements can be conducted without the concern of ice flows damaging the sensor.
DOI: 10.15468/dl.jkcer3
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-110.21212 38.10593,-110.9334 37.70789,-111.40584 36.76224,-108.93151 36.54791,-108.25074 37.78377,-110.21212 38.10593))",
 "TaxonKey is Tamarix ramosissima Ledeb."
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072817-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14651447
title: Sediment oxygen penetration depths in Reyðarfjörður and Berufjörður, Iceland

description: Datasets comprise of oxygen peneration depths measured in intact cores collected from Reyðarfjörður and Berufjörður, Iceland.

Intact seafloor sediment were collected by box corer in in June 2023 aboard the R/V Skagerrak (Universirt of Gothenburg). Sediment cores (inner diameter = 4.6 cm, n=1-2) were sub-sampled from undistrubed sediment surface in the corer, and were transfered immediately to temperature controlled room on deck for sediment oxygen microprofiling. To determination oxygen penetration depth in each core, oxygen microprofiles (n = 2–6) were measured using Clark-type oxygen microelectrodes with a guard cathode (Revsbech 1989) mounted on a motorised micromanipulator (Unisense) at a vertical resolution of 200 μm.

Water depth, bottom water temperature and salinity of each sampling station were measured by Sea-Bird SBE 911 prior to sediment sampling.
DOI: 10.5281/zenodo.14651448
title: Sediment oxygen penetration depths in Reyðarfjörður and Berufjörður, Iceland

description: Datasets comprise of oxygen peneration depths measured in intact cores collected from Reyðarfjörður and Berufjörður, Iceland.

Intact seafloor sediment were collected by box corer in in June 2023 aboard the R/V Skagerrak (Universirt of Gothenburg). Sediment cores (inner diameter = 4.6 cm, n=1-2) were sub-sampled from undistrubed sediment surface in the corer, and were transfered immediately to temperature controlled room on deck for sediment oxygen microprofiling. To determination oxygen penetration depth in each core, oxygen microprofiles (n = 2–6) were measured using Clark-type oxygen microelectrodes with a guard cathode (Revsbech 1989) mounted on a motorised micromanipulator (Unisense) at a vertical resolution of 200 μm.

Water depth, bottom water temperature and salinity of each sampling station were measured by Sea-Bird SBE 911 prior to sediment sampling.
DOI: 10.13021/orc2020/uowi5d/dtuia3
title: Readme_Blanchard et al 2024.txt
DOI: 10.13021/orc2020/uowi5d
title: Blanchard et al. 2024 RPPA intensity values

description: RPPA intensity values used in the publication titled "Signaling dynamics in coexisting monoclonal cell subpopulations unveil mechanisms of resistance to anti-cancer compounds" by Blanchard et al. 2024. https://doi.org/10.1186/s12964-024-01742-3
DOI: 10.13021/orc2020/uowi5d/qjubik
title: Blanchard et al. 2024 RPPA data-1.tab