cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5708774
title: SIRIUS Project - Comparative dataset on skills, qualifications and the employability of post-2014 migrants, refugees and asylum seekers

description: The dataset provides harmonized country data on the skills and qualifications of post-2014 migrants, refugees and asylum seekers in all SIRIUS countries (Czech Republic, Denmark, Finland, Greece, Italy, Switzerland, United Kingdom). This dataset and the related codebook have been put together within the framework of Work package 1 of the SIRIUS Project "Skills and Integration of Migrants, Refugees and Asylum Applicants in European Labour markets". The work package, titled “Labour market barriers and enablers", aimed to determine (1) the position of post- 2014 migrants, refugees and asylum seekers in the labour market of their host country, (2) the main features of the host countries’ labour markets focusing on the sectoral structure and the relevant skills and occupations. <strong>Acknowledgments and disclaimers</strong><br> This research was conducted under the Horizon 2020 project ‘SIRIUS’ (770515).<br> The sole responsibility of this publication lies with the author. The European Union is not responsible for any use that may be made of the information contained therein.
DOI: 10.3886/e119446v132
title: COVID-19 US State Policy Database

description: For questions or comments about the database please contact:<br>Alexandra Skinner <br>skinnera@bu.edu <br>Research Fellow & Database Manager<br>Department of Health Law, Policy & Management <br>Boston University School of Public Health<br><br>Database of state policies on closures, shelter-in-place orders, housing protections, changes to Medicaid and SNAP, physical distancing closures, reopening, and more created by researchers at the Boston University School of Public Health. Policies included are state-wide directives or mandates, not guidance or recommendations. In order for a policy to be included, it must apply to the entire state. We are working quickly to go through state government websites to make the policy database as complete and accurate as possible in a rapidly changing policy context. If you use data on a given policy, we encourage you to triangulate based on additional sources of policy data and to review the source documentation to consider the coding decisions that are right for your work. Of course, please email us if you note a discrepancy so we can improve the database for everyone. State policy source documentation can be found at: tinyurl.com/statepolicysources.
description: State policies. Smallest Geographic Unit: State
description: other; Contributors: Megan Cole Brahim, Noa Krawczyk, Carolyn Hoffman, Claire Corkish, Elizabeth Ferrara, Elizabeth Long, Emily Baroni, Faith Contador, Hannah Simon, Morgan Simko, Rachel Scheckman, Sarah Brewer, Sue Kulkarni, Felicia Heykoop, Manish Patel, Aishwarya Vidyasagaran, Andrew Chiao, Cara Safon, Samantha Burkhart, Harry Jung, Victor Lee, Marina MacKinnon, Aarohi Rede, Marie Vearling, Sophie Li, Christina Wang, Tim Levengood, María Jordán P. Emma Chistolini
DOI: 10.6073/pasta/83edfac89476fa1b04582af0b2ddcb91
title: Bonanza Creek LTER: Hourly Barometric Pressure Measurements from 1995 to Present in the Bonanza Creek Experimental Forest near Fairbanks, Alaska

description: A Campbell Scientific data logger and pressure sensor were used to measure barometric pressure at the LTER1 meteorological station in the Bonanza Creek Experimental Forest (BCEF) beginning in 1995.
DOI: 10.25346/s6/r9itvr
title: Area Key

description: Area key for Early Athens area maps
DOI: 10.25346/s6/r9itvr/ekqmye
title: record329.pdf
DOI: 10.25346/s6/r9itvr/jlq01k
title: map329.pdf
DOI: 10.25346/s6/nzg76j/xyq6z2
title: record325.pdf
DOI: 10.25346/s6/nzg76j/b35hvo
title: map328.pdf
DOI: 10.25346/s6/nzg76j/ngm36f
title: map327.pdf
DOI: 10.25346/s6/nzg76j/zewahm
title: map324.pdf
DOI: 10.25346/s6/nzg76j/ichvvw
title: map326.pdf
DOI: 10.25346/s6/nzg76j/hz678b
title: record328.pdf
DOI: 10.25346/s6/nzg76j/itpa8f
title: record324.pdf
DOI: 10.25346/s6/nzg76j/kxuheu
title: record327.pdf
DOI: 10.25346/s6/nzg76j/bktwfn
title: record326.pdf
DOI: 10.25346/s6/nzg76j
title: Area XIII: Theseion

description: Map of Area XIII: Theseion
DOI: 10.25346/s6/nzg76j/f4f7cx
title: map325.pdf
DOI: 10.25346/s6/f8jno3/pv6kag
title: map321.pdf
DOI: 10.25346/s6/f8jno3/t3z0gp
title: record321.pdf
DOI: 10.25346/s6/f8jno3/bz3cn8
title: map320.pdf
DOI: 10.25346/s6/f8jno3/1k2uhr
title: map322.pdf
DOI: 10.25346/s6/f8jno3/m7cht7
title: record319.pdf
DOI: 10.25346/s6/f8jno3/h7brst
title: map319.pdf
DOI: 10.25346/s6/f8jno3/lhxojl
title: map323.pdf
DOI: 10.25346/s6/f8jno3/c2637a
title: record320.pdf
DOI: 10.25346/s6/f8jno3/03ervj
title: record323.pdf
DOI: 10.25346/s6/f8jno3
title: Area XII: Koukaki

description: Map of Area XII: Koukaki
DOI: 10.25346/s6/f8jno3/yf8qj2
title: record322.pdf
DOI: 10.25346/s6/6isn9i/qtkton
title: map318.pdf
DOI: 10.25346/s6/6isn9i/p0qg2t
title: map314.pdf
DOI: 10.25346/s6/6isn9i/sq3efu
title: record315.pdf
DOI: 10.25346/s6/6isn9i/b2mdx3
title: record317.pdf
DOI: 10.25346/s6/6isn9i/efvgq0
title: map315.pdf
DOI: 10.25346/s6/6isn9i/bm3vii
title: record318.pdf
DOI: 10.25346/s6/6isn9i/qoe3w5
title: record316.pdf
DOI: 10.25346/s6/6isn9i/rclzay
title: record314.pdf
DOI: 10.25346/s6/6isn9i/0ld0yb
title: map317.pdf
DOI: 10.25346/s6/6isn9i/hblw4t
title: map316.pdf
DOI: 10.25346/s6/6isn9i
title: Area XI: Kynosarges

description: Map of Area XI: Kynosarges
DOI: 10.25346/s6/kjzuol/5ena1n
title: map312.pdf
DOI: 10.25346/s6/kjzuol/4eshhc
title: record309.pdf
DOI: 10.25346/s6/kjzuol/vuwyyz
title: map311.pdf
DOI: 10.25346/s6/kjzuol/dejvqo
title: record312.pdf
DOI: 10.25346/s6/kjzuol/32k3fu
title: map309.pdf
DOI: 10.25346/s6/kjzuol/msnoxm
title: record311.pdf
DOI: 10.25346/s6/kjzuol/aixyxe
title: map313.pdf
DOI: 10.25346/s6/kjzuol/qznpv6
title: record310.pdf
DOI: 10.25346/s6/kjzuol/0zv8si
title: map310.pdf
DOI: 10.25346/s6/kjzuol/ar0knx
title: record313.pdf
DOI: 10.25346/s6/kjzuol
title: Area X: Makrygianni

description: Dimitriadou, Eirini M., 2019. Early Athens: Settlements and Cemeteries in the Submycenaean, Geometric, and Archaic Periods. Monumenta Archaeologica, 42. Los Angeles: Cotsen Institute of Archaeology Press.
DOI: 10.25346/s6/5pxhhf/fswxyx
title: record307.pdf
DOI: 10.25346/s6/5pxhhf/fmczhf
title: record308.pdf
DOI: 10.25346/s6/5pxhhf/hjp6kx
title: record306.pdf
DOI: 10.25346/s6/5pxhhf/wxq4rk
title: map304.pdf
DOI: 10.25346/s6/5pxhhf/iuf88i
title: record305.pdf
DOI: 10.25346/s6/5pxhhf/lnv0kz
title: record304.pdf
DOI: 10.25346/s6/5pxhhf/hizg7j
title: map307.pdf
DOI: 10.25346/s6/5pxhhf/iehkjy
title: map308.pdf
DOI: 10.25346/s6/5pxhhf/exsrg5
title: map305.pdf
DOI: 10.25346/s6/5pxhhf/zy6gth
title: map306.pdf
DOI: 10.25346/s6/5pxhhf
title: Area IX: Olympieion

description: Map of Area IX: Olympieion
DOI: 10.25346/s6/u4ou6h/9jhx42
title: record299.pdf
DOI: 10.25346/s6/u4ou6h/aerj1u
title: map299.pdf
DOI: 10.25346/s6/u4ou6h/hl9paz
title: record301.pdf
DOI: 10.25346/s6/u4ou6h/ltj31v
title: map303.pdf
DOI: 10.25346/s6/u4ou6h/rxrfim
title: record300.pdf
DOI: 10.25346/s6/u4ou6h/efkslo
title: map301.pdf
DOI: 10.25346/s6/u4ou6h/0y4ql1
title: record303.pdf
DOI: 10.25346/s6/u4ou6h/giywfk
title: map300.pdf
DOI: 10.25346/s6/u4ou6h/vq3krk
title: map302.pdf
DOI: 10.25346/s6/u4ou6h
title: Area VIII: Acropolis

description: Map of Area VIII: Acropolis
DOI: 10.25346/s6/u4ou6h/fbife9
title: record302.pdf
DOI: 10.25346/s6/fgtgug/duqld0
title: map296.pdf
DOI: 10.25346/s6/fgtgug/g2k0g1
title: record294.pdf
DOI: 10.25346/s6/fgtgug/p22zrf
title: map294.pdf
DOI: 10.25346/s6/fgtgug/iuf3n5
title: record297.pdf
DOI: 10.25346/s6/fgtgug/js6d7d
title: map298.pdf
DOI: 10.25346/s6/fgtgug/zlr4gl
title: map295.pdf
DOI: 10.25346/s6/fgtgug/4sogt6
title: record298.pdf
DOI: 10.25346/s6/fgtgug/b0wsmu
title: map297.pdf
DOI: 10.25346/s6/fgtgug/gtvzxn
title: record296.pdf
DOI: 10.25346/s6/fgtgug/fb9taq
title: record295.pdf
DOI: 10.25346/s6/fgtgug
title: Area VII: National Garden - Syntagma Square

description: Map of Area VII: National Garden - Syntagma Square
DOI: 10.25346/s6/tnfgql/08nff7
title: map293.pdf
DOI: 10.25346/s6/tnfgql/00b8pa
title: record290.pdf
DOI: 10.25346/s6/tnfgql/4p4gbe
title: map291.pdf
DOI: 10.25346/s6/tnfgql/y8py90
title: record292.pdf
DOI: 10.25346/s6/tnfgql/d8nmla
title: record291.pdf
DOI: 10.25346/s6/tnfgql/fn7urb
title: record293.pdf
DOI: 10.25346/s6/tnfgql/z9wien
title: map289.pdf
DOI: 10.25346/s6/tnfgql/oxs2tg
title: map292.pdf
DOI: 10.25346/s6/tnfgql/jbrzfb
title: record289.pdf
DOI: 10.25346/s6/tnfgql/s4loyj
title: map290.pdf
DOI: 10.25346/s6/tnfgql
title: Area VI: Plaka

description: Map of Area VI: Plaka
DOI: 10.25346/s6/azefzr/6c8ltf
title: record284.pdf
DOI: 10.25346/s6/azefzr/vwsjny
title: map285.pdf
DOI: 10.25346/s6/azefzr/bt59ou
title: record285.pdf
DOI: 10.25346/s6/azefzr/jbwjdz
title: map284.pdf
DOI: 10.25346/s6/azefzr/kzlg7a
title: map288.pdf
DOI: 10.25346/s6/azefzr/sz2tpg
title: map286.pdf
DOI: 10.25346/s6/azefzr/fxhfws
title: record288.pdf
DOI: 10.25346/s6/azefzr/gvxnzb
title: record286.pdf
DOI: 10.25346/s6/azefzr/azxlaj
title: record287.pdf
DOI: 10.25346/s6/azefzr
title: Area V: Commercial Center

description: Map of Area V: Commercial Center
DOI: 10.25346/s6/azefzr/00wlfb
title: map287.pdf
DOI: 10.25346/s6/0dun8p/bap9uh
title: map281.pdf
DOI: 10.25346/s6/0dun8p/ohnypr
title: record281.pdf
DOI: 10.25346/s6/0dun8p/w2yefq
title: record279.pdf
DOI: 10.25346/s6/0dun8p/7yicxt
title: record282.pdf
DOI: 10.25346/s6/0dun8p/0ulzel
title: record283.pdf
DOI: 10.25346/s6/0dun8p/wbpkrw
title: record280.pdf
DOI: 10.25346/s6/0dun8p/ti9tyl
title: map280.pdf
DOI: 10.25346/s6/0dun8p/ucqbwp
title: map283.pdf
DOI: 10.25346/s6/0dun8p/j68czl
title: map282.pdf
DOI: 10.25346/s6/0dun8p
title: Area IV: Varvakeios - Omonoia Square

description: Map of Area IV: Varvakeios - Omonoia Square
DOI: 10.25346/s6/0dun8p/johkme
title: map279.pdf
DOI: 10.25346/s6/wcgz4a/xgnnok
title: record278.pdf
DOI: 10.25346/s6/wcgz4a/1kqxke
title: map277.pdf
DOI: 10.25346/s6/wcgz4a/vc97mg
title: map276.pdf
DOI: 10.25346/s6/wcgz4a/bd0ydq
title: map274.pdf
DOI: 10.25346/s6/wcgz4a/y5zzqm
title: record275.pdf
DOI: 10.25346/s6/wcgz4a/g5t8qu
title: record276.pdf
DOI: 10.25346/s6/wcgz4a/yga5jj
title: map275.pdf
DOI: 10.25346/s6/wcgz4a/dwudgu
title: map278.pdf
DOI: 10.25346/s6/wcgz4a/ytdzap
title: record277.pdf
DOI: 10.25346/s6/wcgz4a
title: Area III: Psyrri - Koumoundouros Square

description: Map of Area III: Psyrri - Koumoundouros Square
DOI: 10.25346/s6/wcgz4a/1yc5es
title: record274.pdf
DOI: 10.6073/pasta/ddafa14d91edc1092d4463d66d157fb9
title: McMurdo Dry Valleys Macronutrient Concentrations (NH4 - NO3 - NO2 - PO4) in Lakes

description: An important part of the McMurdo Long Term Ecological Research (LTER) project is identifying patterns and movements of nutrients in perennial ice-covered lakes. This data set addresses this core area of research and quantifies macronutrient concentrations found at specific depths in McMurdo Dry Valley lakes.
DOI: 10.25346/s6/uxr2hj/feddas
title: record272.pdf
DOI: 10.25346/s6/uxr2hj/oqhbii
title: map272.pdf
DOI: 10.25346/s6/uxr2hj/ydtrhz
title: map269.pdf
DOI: 10.25346/s6/uxr2hj/cd9u7m
title: map270.pdf
DOI: 10.25346/s6/uxr2hj/ljytcr
title: record273.pdf
DOI: 10.25346/s6/uxr2hj/hzqrdd
title: record270.pdf
DOI: 10.25346/s6/uxr2hj/2cquzu
title: record269.pdf
DOI: 10.25346/s6/uxr2hj/az83bq
title: map273.pdf
DOI: 10.25346/s6/uxr2hj/cisyjq
title: record271.pdf
DOI: 10.25346/s6/uxr2hj/rxqmpq
title: map271.pdf
DOI: 10.25346/s6/uxr2hj
title: Area II: Ancient Agora - Areopagus - Monastiraki

description: Map of Area II: Ancient Agora - Areopagus - Monastiraki
DOI: 10.25346/s6/7xq7gp/cczdov
title: record264.pdf
DOI: 10.25346/s6/7xq7gp/i2mvkk
title: map264.pdf
DOI: 10.25346/s6/7xq7gp/1d9q4u
title: record265.pdf
DOI: 10.25346/s6/7xq7gp/ckq1zw
title: record268.pdf
DOI: 10.25346/s6/7xq7gp/pmx57b
title: record267.pdf
DOI: 10.25346/s6/7xq7gp/zgii3h
title: record266.pdf
DOI: 10.25346/s6/7xq7gp/i5btpv
title: map265.pdf
DOI: 10.25346/s6/7xq7gp/ekjw0o
title: map267.pdf
DOI: 10.25346/s6/7xq7gp/opebvb
title: map266.pdf
DOI: 10.25346/s6/7xq7gp/7h39f6
title: map268.pdf
DOI: 10.25346/s6/7xq7gp
title: Area I: Kerameikos

description: Map of Area I: Kerameikos
DOI: 10.25346/s6/3alzvr/tkuggl
title: map263.pdf
DOI: 10.25346/s6/3alzvr/2b0zbz
title: record263.pdf
DOI: 10.25346/s6/3alzvr
title: Figure 4.20: Athens. Sites of Archaic cemeteries and habitation areas.

description: Map of Figure 4.20: Athens. Sites of Archaic cemeteries and habitation areas.
DOI: 10.6073/pasta/95adee9e18f9487a373b51adced40875
title: McMurdo Dry Valleys Dissolved Organic Carbon Concentrations in Lakes

description: The McMurdo Long Term Ecological Research (LTER) project monitors patterns of organic material transport in perennial ice-capped lakes. This data set addresses this core area of research and quantifies dissolved organic carbon concentrations at specific depths in McMurdo Dry Valley lakes.
DOI: 10.25346/s6/llromt/oz4nmo
title: map262.pdf
DOI: 10.25346/s6/llromt/fncgn3
title: record262.pdf
DOI: 10.25346/s6/llromt
title: Figure 4.19: Athens. Sites of the Submycenaean, Geometric (PG, EG/MG, LG), and Archaic cemeteries.

description: Map of Figure 4.19: Athens. Sites of the Submycenaean, Geometric (PG, EG/MG, LG), and Archaic cemeteries.
DOI: 10.25346/s6/2ushr6/dx4wwf
title: map261.pdf
DOI: 10.25346/s6/2ushr6/fjwvtg
title: record261.pdf
DOI: 10.25346/s6/2ushr6
title: Figure 3.49: Athens. The sites of the Late Geometric cemeteries

description: Map of Figure 3.49: Athens. The sites of the Late Geometric cemeteries.
DOI: 10.25346/s6/cu7xqa/vpb9mv
title: record260.pdf
DOI: 10.25346/s6/cu7xqa
title: Figure 3.48: Athens. The sites of the Early and Middle Geometric cemeteries.

description: Map of Figure 3.48: Athens. The sites of the Early and Middle Geometric cemeteries.
DOI: 10.25346/s6/cu7xqa/rvlymj
title: map260.pdf
DOI: 10.25346/s6/32lbdj/ssgktw
title: map259.pdf
DOI: 10.25346/s6/32lbdj/gqsmv6
title: record259.pdf
DOI: 10.25346/s6/32lbdj
title: Figure 3.47: Athens. The sites of the Protogeometric cemeteries

description: Map of Figure 3.47: Athens. The sites of the Protogeometric cemeteries.
DOI: 10.25346/s6/xdtfvw/erk8q8
title: map258.pdf
DOI: 10.25346/s6/xdtfvw/reb1gy
title: record258.pdf
DOI: 10.25346/s6/xdtfvw
title: Figure 2.19: Athens. Sites of Submycenaean cemeteries and areas of habitation

description: Map of Figure 2.19: Athens. Sites of Submycenaean cemeteries and areas of habitation.
DOI: 10.25346/s6/hl3fsk/z17mvf
title: record257.pdf
DOI: 10.25346/s6/hl3fsk/tux5ne
title: map257.pdf
DOI: 10.25346/s6/hl3fsk
title: Child Graves of Submycenaean and Geometric Periods

description: Map of Child Graves of Submycenaean and Geometric Periods
DOI: 10.25346/s6/qt89ac/o1xgwq
title: map256.pdf
DOI: 10.25346/s6/qt89ac/fjsvhh
title: record256.pdf
DOI: 10.25346/s6/qt89ac
title: Archaic Period (with Spolia)

description: Map of Archaic Period (with Spolia)
DOI: 10.25346/s6/18o7iy/nnmspd
title: record255.pdf
DOI: 10.25346/s6/18o7iy/2zil6g
title: map255.pdf
DOI: 10.25346/s6/18o7iy
title: Archaic Period

description: Map of Archaic Period
DOI: 10.25346/s6/ir5yck/fwzffg
title: map254.pdf
DOI: 10.25346/s6/ir5yck
title: Late Geometric/Archaic Period

description: Map of Late Geometric/Archaic Period
DOI: 10.25346/s6/ir5yck/tcybyv
title: record254.pdf
DOI: 10.25346/s6/rnz1w0/9g01qg
title: record253.pdf
DOI: 10.25346/s6/rnz1w0/dmh2nz
title: map253.pdf
DOI: 10.25346/s6/rnz1w0
title: Late Geometric Period

description: Map of Late Geometric Period
DOI: 10.25346/s6/imn75v/b5cbgw
title: record252.pdf
DOI: 10.25346/s6/imn75v/ukqpay
title: map252.pdf
DOI: 10.25346/s6/imn75v
title: Early/Middle Geometric, Late Geometric Periods

description: Map of Early/Middle Geometric, Late Geometric Periods
DOI: 10.25346/s6/llbsd6/9xgpkw
title: record251.pdf
DOI: 10.25346/s6/llbsd6/aah2pn
title: map251.pdf
DOI: 10.25346/s6/llbsd6
title: Early/Middle Geometric Period

description: Map of Early/Middle Geometric Period
DOI: 10.25345/c5n86f
title: MassIVE MSV000088403 - Functional conservation and divergence of the helix-turn-helix motif of E2 ubiquitin-conjugating enzymes
title: Supporting .raw data for "Functional conservation and divergence of the helix-turn-helix motif of E2 ubiquitin-conjugating enzymes", related to Figure 1E and EV1A.
DOI: 10.25346/s6/6uo4wu/t5wuvf
title: map250.pdf
DOI: 10.25346/s6/6uo4wu/mrgb6f
title: record250.pdf
DOI: 10.25346/s6/6uo4wu
title: Protogeometric Period

description: Map of Protogeometric Period
DOI: 10.25346/s6/tyvjzh/e3uhlp
title: map249.pdf
DOI: 10.25346/s6/tyvjzh
title: Geometric Period

description: Map of Geometric Period
DOI: 10.25346/s6/tyvjzh/l3kajf
title: record249.pdf
DOI: 10.25346/s6/iaeicj/vvdytp
title: map248.pdf
DOI: 10.25346/s6/iaeicj/3f1f6e
title: record248.pdf
DOI: 10.25346/s6/iaeicj
title: Submycenaean, Protogeometric, Early/Middle Geometric, Late Geometric, and Archaic Periods

description: Map of Submycenaean, Protogeometric, Early/Middle Geometric, Late Geometric, and Archaic Periods
DOI: 10.25346/s6/1wmhc9/jxwenx
title: record247.pdf
DOI: 10.25346/s6/1wmhc9
title: Submycenaean, Protogeometric, Early/Middle Geometric, and Late Geometric Periods

description: Map of Submycenaean, Protogeometric, Early/Middle Geometric, and Late Geometric Periods
DOI: 10.25346/s6/1wmhc9/w6nczb
title: map247.pdf
DOI: 10.25346/s6/qlyfzo/4ojp2i
title: record246.pdf
DOI: 10.25346/s6/qlyfzo/woiszh
title: map246.pdf
DOI: 10.25346/s6/qlyfzo
title: Submycenaean and Protogeometric Periods

description: Map of Submycenaean and Protogeometric Periods
DOI: 10.25346/s6/9p0fnf/hspdvy
title: record245.pdf
DOI: 10.25346/s6/9p0fnf/jianau
title: map245.pdf
DOI: 10.25346/s6/9p0fnf
title: Submycenaean Period and Distance of the Old and New Cemeteries from the Acropolis

description: Map of Submycenaean Period and Distance of the Old and New Cemeteries from the Acropolis
DOI: 10.25346/s6/vaijtu/sevh4u
title: record244.pdf
DOI: 10.25346/s6/vaijtu/lwu0ym
title: map244.pdf
DOI: 10.25346/s6/vaijtu
title: Submycenaean Period

description: Map of Submycenaean Period
DOI: 10.6084/m9.figshare.14960006
title: Data for reproducing Webster figures

description: # Data for reproducing Webster figures<br>This zip file contains the file structure and input data for plugging into the Webster figure generation code repo (https://github.com/joshbiology/gene_fn).<br>For flat files and Excel spreadsheets containing the actual output of Webster, see our other Figshare (10.6084/m9.figshare.14963561).<br>This folder is strucured as follows:<br>```data├── interim│ ├── biomarker│ └── matlab│ ├── depmap_deep│ ├── depmap_denoise│ ├── depmap_grid│ ├── depmap_wide│ ├── durocher│ ├── durocher_no_graph│ └── synthetic└── raw ├── depmap ├── durocher ├── genesets ├── hart ├── humancellmap ├── nusiance_genesets └── prism```<br><br>## raw<br>This folder contains tables from other resources, described below.<br>* depmap<br>https://depmap.org/<br>* durocher<br>https://pubmed.ncbi.nlm.nih.gov/32649862/<br>* genesets<br>Custom genesets from:<br>* * STAGA/ATAC complexes (Spedale et al., 2012)* * SWI/SNF complexes (Mashtalir et al., 2018).* * Mediator complex (Tsai et al., 2014). * * Integrator complex (Pfleiderer and Galej, 2021; Sabath et al., 2020; Tilley et al., 2021; Zheng et al., 2020)<br><br>* hart<br>Common essential genesets from Hart et al. 2015<br>* humancellmap<br>Subcellular localization info from https://humancellmap.org/ and Go et al. 2021.<br>* nusiance_genesets<br>Genesets from HUGO.<br>* prism<br>Compound sensitivity data from https://depmap.org/repurposing/ and Corsello et al 2020.<br><br>## interim<br>This folder contains MATLAB files (.mat) that are the output of the dual-graph regularized dictionary learning applied with this codebase (https://github.com/joshbiology/graph_dictionary_learning) on preprocessed input data contained here (10.6084/m9.figshare.14963561).<br>* depmap_deep<br>Input: DepMap data. Output: sweep over a few values of k, at t=4 and multiple random seeds.<br>* depmap_denoise<br>Input: DepMap data with added noise. Output: Dictionaries (k=220, t=4) learned on noisy DepMap data.<br>* depmap_grid<br>Input: DepMap data. Output: sweep over many values of k and t.<br>* depmap_wide<br>Input: DepMap data. Output: sweep over many values of k, and t = 4 and the same random seed.<br>* durocher<br>Input: genotoxic fitness data (Olivieri et al 2020). Output: sweep over many values of k, at t=1,2.<br>* durocher_no_graph<br>Input: genotoxic fitness data (Olivieri et al 2020). Output: sweep over many values of k, at t=1,2, with alpha and beta set to 0. <br>* synthetic<br>Input: Synthetic fitness data.<br><br>VersionsV1: Initial commitV2: Cached additional intermediate data in the interim folder.
DOI: 10.6073/pasta/757f4a174f525197e762652cb40133e6
title: Bonanza Creek LTER: Hourly Wind Speed and Direction at Various Heights from 1988 to Present in the Caribou-Poker Creeks Research Watershed near Fairbanks, Alaska

description: Hourly wind data from sefveral sites with the the Caribou Poker Creeks Research Watershed. Wind data should be used cautiously during winter months due to ice and snow build up on sensors.
DOI: 10.6084/m9.figshare.17033309
title: Code and data from Dallas et al. "Predicting the tripartite network of mosquito-borne disease"

description: ## Predicting the tripartite network of mosquito-borne disease<br><br>### Citation<br><br>Code and data to reproduce the analyses from<br><br>&gt; Dallas, TA, SJ Ryan, B Bellekom, A Fagre, R Christofferson, and CJ Carlson. 2021. Predicting the tripartite network of mosquito-borne disease. <br><br><br><br><br><br>## Compiling the project<br><br>To compile the R markdown, the following terminal command can be issued from the directory where the files are all located.<br><br><br>```<br>Rscript -e 'install.packages(c("gbm", "ROCR", "plyr",<br> "dplyr", "igraph", "vegan", "xtable", "parallel"))'<br><br>Rscript -e 'rmarkdown::render("analysis.Rmd", output_format="pdf_document")'<br><br>```<br><br><br>
DOI: 10.6084/m9.figshare.17033309.v1
title: Code and data from Dallas et al. "Predicting the tripartite network of mosquito-borne disease"

description: ## Predicting the tripartite network of mosquito-borne disease<br><br>### Citation<br><br>Code and data to reproduce the analyses from<br><br>&gt; Dallas, TA, SJ Ryan, B Bellekom, A Fagre, R Christofferson, and CJ Carlson. 2021. Predicting the tripartite network of mosquito-borne disease. <br><br><br><br><br><br>## Compiling the project<br><br>To compile the R markdown, the following terminal command can be issued from the directory where the files are all located.<br><br><br>```<br>Rscript -e 'install.packages(c("gbm", "ROCR", "plyr",<br> "dplyr", "igraph", "vegan", "xtable", "parallel"))'<br><br>Rscript -e 'rmarkdown::render("analysis.Rmd", output_format="pdf_document")'<br><br>```<br><br><br>
DOI: 10.6073/pasta/e357bb25c96937757e081091238c90ec
title: Bonanza Creek LTER: Hourly Evaporation measurements at Core Sites from 1988 to Present in the Bonanza Creek Experimental Forest near Fairbanks, Alaska

description: This study is a survey of the vegetation of the 35 control sites in Bonanza Creek LTER. The 35 sites represent replicates each of six successional stages of primary succession on the floodplain of the Tanana River and four stages of succession uplandsas well as a few recently burned sites. Data include percent cover of all species and count based on twenty 1 m2 or 4 m2 plots. Plots in young stages of succession were remeasured every 1 to 2 years; those in older stages every 3 to 5 years. Some information on biomass in these stages is available. Although most sites were established in 1988 some sites have vegetation plots that have been sampled periodically since 1965. 2009 was the last year of sampling using visual estimates of percent cover. In 2007 a new point framing system was developed and is now used for collecting vegetation data from these sites.