cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5918569
title: Supplementary Material for: Automatic MRI Quantifying Methods in Behavioral-Variant Frontotemporal Dementia Diagnosis

description: <b><i>Aims:</i></b> We assessed the value of automated MRI quantification methods in the differential diagnosis of behavioral-variant frontotemporal dementia (bvFTD) from Alzheimer disease (AD), Lewy body dementia (LBD), and subjective memory complaints (SMC). We also examined the role of the <i>C9ORF72</i>-related genetic status in the differentiation sensitivity. <b><i>Methods:</i></b> The MRI scans of 50 patients with bvFTD (17 <i>C9ORF72</i> expansion carriers) were analyzed using 6 quantification methods as follows: voxel-based morphometry (VBM), tensor-based morphometry, volumetry (VOL), manifold learning, grading, and white-matter hyperintensities. Each patient was then individually compared to an independent reference group in order to attain diagnostic suggestions. <b><i>Results:</i></b> Only VBM and VOL showed utility in correctly identifying bvFTD from our set of data. The overall classification sensitivity of bvFTD with VOL + VBM achieved a total sensitivity of 60%. Using VOL + VBM, 32% were misclassified as having LBD. There was a trend of higher values for classification sensitivity of the <i>C9ORF72</i> expansion carriers than noncarriers. <b><i>Conclusion:</i></b><i></i> VOL, VBM, and their combination are effective in differential diagnostics between bvFTD and AD or SMC. However, MRI atrophy profiles for bvFTD and LBD are too similar for a reliable differentiation with the quantification methods tested in this study.
DOI: 10.6084/m9.figshare.5918551
title: Cicada parasitic moths from China (Lepidoptera: Epipyropidae): morphology, identity, biology, and biogeography

description: Species of the family Epipyropidae are infrequently collected due to their ectoparasitic lifestyle and have therefore received little study. Based on our morphological and molecular analyses, all specimens found parasitizing different species of cicadas in China belong to one species, <i>Epipomponia nawai</i> (Dyar). The species <i>Epipomponia oncotympana</i> Yang (nom. invalid.) was found to be identical with <i>E. nawai</i>. The morphology of the egg, larva, pupa, and adult of <i>E. nawai</i> is described, including the ultrastructure of the egg and larva. Seven types of sensilla and their distribution pattern on the antennae of both females and males of <i>E. nawai</i> are examined using scanning electron microscopy, resulting in a better understanding of sexual dimorphism in this species. Population differentiation and phylogenetic relationships amongst populations of <i>E. nawai</i> occurring in China, the Korean Peninsula, and Japan are analysed. The intraspecific genetic distances suggest a low genetic differentiation which is also consistent with the minor morphological variations. The biogeographic analysis reveals that the Qinling Mountain Range, which is geographically the border of the subtropical and temperate zones, is presumably one of the most important geographic barriers to the gene flow of <i>E. nawai</i>. Our molecular phylogenetic analysis based on the <i>COI</i> gene of <i>E. nawai</i> indicates that frequent gene flow might have occurred in the China mainland, Taiwan and Japan islands, and possibly also the Ryukyu Islands after the Quaternary ice ages. In addition, the biology and behaviour of both larvae and adults of <i>E. nawai</i> were also observed, and results indicate the possibility of bisexual reproduction in this moth. Our results increase the understanding of the morphology, diversity, distribution, and biology of this unusual moth, and should aid future studies on patterns of population differentiation, biogeography, and reproductive behaviour in other epipyropids.
DOI: 10.6084/m9.figshare.5918551.v1
title: Cicada parasitic moths from China (Lepidoptera: Epipyropidae): morphology, identity, biology, and biogeography

description: Species of the family Epipyropidae are infrequently collected due to their ectoparasitic lifestyle and have therefore received little study. Based on our morphological and molecular analyses, all specimens found parasitizing different species of cicadas in China belong to one species, <i>Epipomponia nawai</i> (Dyar). The species <i>Epipomponia oncotympana</i> Yang (nom. invalid.) was found to be identical with <i>E. nawai</i>. The morphology of the egg, larva, pupa, and adult of <i>E. nawai</i> is described, including the ultrastructure of the egg and larva. Seven types of sensilla and their distribution pattern on the antennae of both females and males of <i>E. nawai</i> are examined using scanning electron microscopy, resulting in a better understanding of sexual dimorphism in this species. Population differentiation and phylogenetic relationships amongst populations of <i>E. nawai</i> occurring in China, the Korean Peninsula, and Japan are analysed. The intraspecific genetic distances suggest a low genetic differentiation which is also consistent with the minor morphological variations. The biogeographic analysis reveals that the Qinling Mountain Range, which is geographically the border of the subtropical and temperate zones, is presumably one of the most important geographic barriers to the gene flow of <i>E. nawai</i>. Our molecular phylogenetic analysis based on the <i>COI</i> gene of <i>E. nawai</i> indicates that frequent gene flow might have occurred in the China mainland, Taiwan and Japan islands, and possibly also the Ryukyu Islands after the Quaternary ice ages. In addition, the biology and behaviour of both larvae and adults of <i>E. nawai</i> were also observed, and results indicate the possibility of bisexual reproduction in this moth. Our results increase the understanding of the morphology, diversity, distribution, and biology of this unusual moth, and should aid future studies on patterns of population differentiation, biogeography, and reproductive behaviour in other epipyropids.
DOI: 10.5517/ccdc.csd.cc24687w
title: CCDC 1972227: Experimental Crystal Structure Determination

description: Related Article: Yan Zhang, Julia Struwe, Lutz Ackermann|2020|Angew.Chem.,Int.Ed.|59|15076|doi:10.1002/anie.202005257
DOI: 10.6084/m9.figshare.5918500
title: MS raw data

description: Mass spec result
DOI: 10.6084/m9.figshare.5918500.v1
title: MS raw data

description: Mass spec result
DOI: 10.6084/m9.figshare.5918485
title: Top 20 Relative Abundance of gut in infants Data

description: The relative abundance of top 20 bacterial genus in 33 healthy Japanese infant's gut. This data was used in the study "Maternal antimicrobial use at delivery has a stronger impact than mode of delivery on bifidobacterial colonization in infants: a pilot study".
DOI: 10.6084/m9.figshare.5918467
title: Sumstats file produced from STACKs pipeline

description: Various genetic parameter statistics for four groups.<br>
DOI: 10.6084/m9.figshare.5918467.v1
title: Sumstats file produced from STACKs pipeline

description: Various genetic parameter statistics for four groups.<br>
DOI: 10.6084/m9.figshare.5918464
title: VCF file produced from STACKs pipeline

description: The VCF file including SNP information.
DOI: 10.6084/m9.figshare.5918464.v1
title: VCF file produced from STACKs pipeline

description: The VCF file including SNP information.
DOI: 10.6084/m9.figshare.5918413
title: Additional file 9: of Epigenome-wide analysis in newborn blood spots from monozygotic twins discordant for cerebral palsy reveals consistent regional differences in DNA methylation

description: DNA methylation differences within each discordant CP twin pair, identifying numerous loci showing large DNA methylation differences within each discordant twin pair. (PPTX 3104Â kb)
DOI: 10.6084/m9.figshare.5918413.v1
title: Additional file 9: of Epigenome-wide analysis in newborn blood spots from monozygotic twins discordant for cerebral palsy reveals consistent regional differences in DNA methylation

description: DNA methylation differences within each discordant CP twin pair, identifying numerous loci showing large DNA methylation differences within each discordant twin pair. (PPTX 3104Â kb)
DOI: 10.6084/m9.figshare.5918401
title: Additional file 7: of Epigenome-wide analysis in newborn blood spots from monozygotic twins discordant for cerebral palsy reveals consistent regional differences in DNA methylation

description: Gene ontology (GO) analysis for top DMRs ranked by p-value (XLSX 38 kb)
DOI: 10.6084/m9.figshare.5918401.v1
title: Additional file 7: of Epigenome-wide analysis in newborn blood spots from monozygotic twins discordant for cerebral palsy reveals consistent regional differences in DNA methylation

description: Gene ontology (GO) analysis for top DMRs ranked by p-value (XLSX 38 kb)
DOI: 10.6084/m9.figshare.5918395
title: Additional file 6: of Epigenome-wide analysis in newborn blood spots from monozygotic twins discordant for cerebral palsy reveals consistent regional differences in DNA methylation

description: Gene ontology (GO) analysis for top-ranked 1000 DMPs ranked by p value. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.5918395.v1
title: Additional file 6: of Epigenome-wide analysis in newborn blood spots from monozygotic twins discordant for cerebral palsy reveals consistent regional differences in DNA methylation

description: Gene ontology (GO) analysis for top-ranked 1000 DMPs ranked by p value. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.5918389
title: Additional file 5: of Epigenome-wide analysis in newborn blood spots from monozygotic twins discordant for cerebral palsy reveals consistent regional differences in DNA methylation

description: Comparison of cell type composition of cerebral palsy cases versus normal individuals. CD8T and CD4T: cytotoxic T cells; NK: natural-killer cells; B cell: B cell or B lymphocytes; Mono: monocytes; Gran: granulocytes. (PDF 87Â kb)
DOI: 10.6084/m9.figshare.5918389.v1
title: Additional file 5: of Epigenome-wide analysis in newborn blood spots from monozygotic twins discordant for cerebral palsy reveals consistent regional differences in DNA methylation

description: Comparison of cell type composition of cerebral palsy cases versus normal individuals. CD8T and CD4T: cytotoxic T cells; NK: natural-killer cells; B cell: B cell or B lymphocytes; Mono: monocytes; Gran: granulocytes. (PDF 87Â kb)
DOI: 10.6084/m9.figshare.5918365
title: Additional file 1: of Epigenome-wide analysis in newborn blood spots from monozygotic twins discordant for cerebral palsy reveals consistent regional differences in DNA methylation

description: Primer sequences used in site-specific validation using MassArray EpiTYPER. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.5918365.v1
title: Additional file 1: of Epigenome-wide analysis in newborn blood spots from monozygotic twins discordant for cerebral palsy reveals consistent regional differences in DNA methylation

description: Primer sequences used in site-specific validation using MassArray EpiTYPER. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.5918341
title: Additional file 10: of Epigenome-wide analysis in newborn blood spots from monozygotic twins discordant for cerebral palsy reveals consistent regional differences in DNA methylation

description: Gene ontology (biological process) common to multiple twin pairs. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.5918341.v1
title: Additional file 10: of Epigenome-wide analysis in newborn blood spots from monozygotic twins discordant for cerebral palsy reveals consistent regional differences in DNA methylation

description: Gene ontology (biological process) common to multiple twin pairs. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.12894644.v1
title: Socio-demographic and Lifestyle factors associated with Understanding Fast Food Consumption among Adults in Cambodia

description: Questionnaire in English and KhmerCode book <br>
DOI: 10.6084/m9.figshare.12894644
title: Socio-demographic and Lifestyle factors associated with Understanding Fast Food Consumption among Adults in Cambodia

description: Questionnaire in English and KhmerCode book <br>
DOI: 10.6084/m9.figshare.5918182
title: Additional file 2: of Understanding nursesâ dual practice: a scoping review of what we know and what we still need to ask on nurses holding multiple jobs

description: Spreadsheet of papers reviewed. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.5918182.v1
title: Additional file 2: of Understanding nursesâ dual practice: a scoping review of what we know and what we still need to ask on nurses holding multiple jobs

description: Spreadsheet of papers reviewed. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.5918146
title: Additional file 4 of Multilocus sequence typing: genetic diversity in Trypanosoma cruzi I (TcI) isolates from Brazilian didelphids

description: Table S2 SNP data showing putative donor and recipient isolates for LYT1. Sequences containing heterozygous SNPs (R) and putative homozygous donor (D) genotypes. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.5918146.v1
title: Additional file 4 of Multilocus sequence typing: genetic diversity in Trypanosoma cruzi I (TcI) isolates from Brazilian didelphids

description: Table S2 SNP data showing putative donor and recipient isolates for LYT1. Sequences containing heterozygous SNPs (R) and putative homozygous donor (D) genotypes. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.5918125
title: Additional file 3 of Multilocus sequence typing: genetic diversity in Trypanosoma cruzi I (TcI) isolates from Brazilian didelphids

description: Table S1 SNP data showing putative donor and recipient isolates for METIII. Sequences containing heterozygous SNPs (R) and putative homozygous donor (D) genotypes. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.5918125.v1
title: Additional file 3 of Multilocus sequence typing: genetic diversity in Trypanosoma cruzi I (TcI) isolates from Brazilian didelphids

description: Table S1 SNP data showing putative donor and recipient isolates for METIII. Sequences containing heterozygous SNPs (R) and putative homozygous donor (D) genotypes. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.5918116
title: Additional file 3: of Canine caliciviruses of four serotypes from military and research dogs recovered in 1963â 1978 belong to two phylogenetic clades in the Vesivirus genus

description: Table S1. GenBank accession numbers of the sequences used in Table 3. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.5918116.v1
title: Additional file 3: of Canine caliciviruses of four serotypes from military and research dogs recovered in 1963â 1978 belong to two phylogenetic clades in the Vesivirus genus

description: Table S1. GenBank accession numbers of the sequences used in Table 3. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.5918041
title: Additional file 6: Figure S3. of Gene expression correlated with delay in shell formation in larval Pacific oysters (Crassostrea gigas) exposed to experimental ocean acidification provides insights into shell formation mechanisms

description: Summary of functional enrichment results of the WGCNA clusters showing differences in expression across treatments (“blue” clusters in Fig. 3), as well as the 55 transcripts showing significant time*treatment effects (Fig. 2). (XLSX 12 kb)
DOI: 10.6084/m9.figshare.5918041.v1
title: Additional file 6: Figure S3. of Gene expression correlated with delay in shell formation in larval Pacific oysters (Crassostrea gigas) exposed to experimental ocean acidification provides insights into shell formation mechanisms

description: Summary of functional enrichment results of the WGCNA clusters showing differences in expression across treatments (“blue” clusters in Fig. 3), as well as the 55 transcripts showing significant time*treatment effects (Fig. 2). (XLSX 12 kb)
DOI: 10.6084/m9.figshare.5918008
title: Additional file 4: Figure S1. of Gene expression correlated with delay in shell formation in larval Pacific oysters (Crassostrea gigas) exposed to experimental ocean acidification provides insights into shell formation mechanisms

description: Mapping statistics for all samples, with and without duplicate reads. Sample names include: Time post-fertilization (in hours), treatment (C = ambient, T = low Ωarag), and Replicate number (A or B). (XLSX 17 kb)
DOI: 10.6084/m9.figshare.5918008.v1
title: Additional file 4: Figure S1. of Gene expression correlated with delay in shell formation in larval Pacific oysters (Crassostrea gigas) exposed to experimental ocean acidification provides insights into shell formation mechanisms

description: Mapping statistics for all samples, with and without duplicate reads. Sample names include: Time post-fertilization (in hours), treatment (C = ambient, T = low Ωarag), and Replicate number (A or B). (XLSX 17 kb)
DOI: 10.6084/m9.figshare.5917996
title: Additional file 3: Table S3. of Gene expression correlated with delay in shell formation in larval Pacific oysters (Crassostrea gigas) exposed to experimental ocean acidification provides insights into shell formation mechanisms

description: Quality statistics for all samples. Sample names include: Time post-fertilization (in hours), treatment (C = ambient, T = low Ωarag), and Replicate number (A or B). (XLSX 12 kb)
DOI: 10.6084/m9.figshare.5917996.v1
title: Additional file 3: Table S3. of Gene expression correlated with delay in shell formation in larval Pacific oysters (Crassostrea gigas) exposed to experimental ocean acidification provides insights into shell formation mechanisms

description: Quality statistics for all samples. Sample names include: Time post-fertilization (in hours), treatment (C = ambient, T = low Ωarag), and Replicate number (A or B). (XLSX 12 kb)
DOI: 10.6084/m9.figshare.5917948
title: Additional file 6: of Patterns of Midichloria infection in avian-borne African ticks and their trans-Saharan migratory hosts

description: Table S4. Pairwise matrix showing the % sequence identity between pairs of 16S rRNA Midichloria sequences obtained in this study and AM181354.1. (DOCX 15Â kb)
DOI: 10.6084/m9.figshare.5917948.v1
title: Additional file 6: of Patterns of Midichloria infection in avian-borne African ticks and their trans-Saharan migratory hosts

description: Table S4. Pairwise matrix showing the % sequence identity between pairs of 16S rRNA Midichloria sequences obtained in this study and AM181354.1. (DOCX 15Â kb)
DOI: 10.6084/m9.figshare.5917918
title: Additional file 4: of Patterns of Midichloria infection in avian-borne African ticks and their trans-Saharan migratory hosts

description: Aligned Midichloria sequences obtained in this study (FASTA). (TXT 31Â kb)
DOI: 10.6084/m9.figshare.5917918.v1
title: Additional file 4: of Patterns of Midichloria infection in avian-borne African ticks and their trans-Saharan migratory hosts

description: Aligned Midichloria sequences obtained in this study (FASTA). (TXT 31Â kb)
DOI: 10.6084/m9.figshare.5917873
title: Additional file 5: of Phylogeny with introgression in Habronattus jumping spiders (Araneae: Salticidae)

description: Concordance file for VCCR clade (text 4.3 mb) (TXT 4182 kb)
DOI: 10.6084/m9.figshare.5917873.v2
title: Additional file 5: of Phylogeny with introgression in Habronattus jumping spiders (Araneae: Salticidae)

description: Concordance file for VCCR clade (text 4.3 mb) (TXT 4182 kb)
DOI: 10.6084/m9.figshare.5917873.v1
title: Additional file 5: of Phylogeny with introgression in Habronattus jumping spiders (Araneae: Salticidae)

description: Concordance file for VCCR clade (text 4.3 mb) (TXT 4182 kb)
DOI: 10.6084/m9.figshare.5917855
title: Additional file 4: of Phylogeny with introgression in Habronattus jumping spiders (Araneae: Salticidae)

description: Concordance file for americanus group. (TXT 74 kb)
DOI: 10.6084/m9.figshare.5917855.v2
title: Additional file 4: of Phylogeny with introgression in Habronattus jumping spiders (Araneae: Salticidae)

description: Concordance file for americanus group. (TXT 74 kb)
DOI: 10.6084/m9.figshare.5917855.v1
title: Additional file 4: of Phylogeny with introgression in Habronattus jumping spiders (Araneae: Salticidae)

description: Concordance file for americanus group. (TXT 74 kb)
DOI: 10.6084/m9.figshare.5917834
title: Additional file 3: of Phylogeny with introgression in Habronattus jumping spiders (Araneae: Salticidae)

description: NEXUS file of the phylogenetic trees from various analyses (text, NEXUS format 250Â kb) (TXT 244 kb)
DOI: 10.6084/m9.figshare.5917834.v2
title: Additional file 3: of Phylogeny with introgression in Habronattus jumping spiders (Araneae: Salticidae)

description: NEXUS file of the phylogenetic trees from various analyses (text, NEXUS format 250Â kb) (TXT 244 kb)
DOI: 10.6084/m9.figshare.5917834.v1
title: Additional file 3: of Phylogeny with introgression in Habronattus jumping spiders (Araneae: Salticidae)

description: NEXUS file of the phylogenetic trees from various analyses (text, NEXUS format 250Â kb) (TXT 244 kb)
DOI: 10.6084/m9.figshare.5917831
title: Additional file 3: of Genetic mapping and comparative genomics to inform restoration enhancement and culture of southern flounder, Paralichthys lethostigma

description: Excel file containing a spreadsheet with locus, linkage group, and position for the consensus map, family map A and B, and sex-specific maps for male and females for each mapping family. (XLSX 251Â kb)
DOI: 10.6084/m9.figshare.5917831.v1
title: Additional file 3: of Genetic mapping and comparative genomics to inform restoration enhancement and culture of southern flounder, Paralichthys lethostigma

description: Excel file containing a spreadsheet with locus, linkage group, and position for the consensus map, family map A and B, and sex-specific maps for male and females for each mapping family. (XLSX 251Â kb)
DOI: 10.6084/m9.figshare.5917816
title: Additional file 2: of Phylogeny with introgression in Habronattus jumping spiders (Araneae: Salticidae)

description: NEXUS files of aligned matrices (five text files, NEXUS format, totaling 131 mb, compressed to a single zip file of 12 mb) (ZIP 15390 kb)
DOI: 10.6084/m9.figshare.5917816.v2
title: Additional file 2: of Phylogeny with introgression in Habronattus jumping spiders (Araneae: Salticidae)

description: NEXUS files of aligned matrices (five text files, NEXUS format, totaling 131 mb, compressed to a single zip file of 12 mb) (ZIP 15390 kb)
DOI: 10.6084/m9.figshare.5917816.v1
title: Additional file 2: of Phylogeny with introgression in Habronattus jumping spiders (Araneae: Salticidae)

description: NEXUS files of aligned matrices (five text files, NEXUS format, totaling 131 mb, compressed to a single zip file of 12 mb) (ZIP 15390 kb)
DOI: 10.6084/m9.figshare.5917771
title: UBD modifies APOL1 induced kidney disease risk

description: RFMix output ancestry label for FSGS discovery, replicate, ESRD and dbGAP imputed G1G2 homo.<br>
DOI: 10.6084/m9.figshare.5917771.v2
title: UBD modifies APOL1 induced kidney disease risk

description: RFMix output ancestry label for FSGS discovery, replicate, ESRD and dbGAP imputed G1G2 homo.<br>
DOI: 10.6084/m9.figshare.5917771.v1
title: UBD modifies APOL1 induced kidney disease risk

description: RFMix output ancestry label for FSGS discovery, replicate, ESRD and dbGAP imputed G1G2 homo.<br>
DOI: 10.6084/m9.figshare.5917435.v1
title: fungi_otu_rep_seqs_and_OTU_table

description: Original data was used to explore latitudinal diversity pattern of forest soil fungal pathogen across China.
DOI: 10.6084/m9.figshare.5917435.v2
title: Latitudinal diversity gradients of plant pathogen and ectomycorrhizal fungi and their association with plant species richness in forest ecosystems of China

description: Original data was used to explore latitudinal diversity pattern of forest soil fungal pathogen across China.
DOI: 10.6084/m9.figshare.5917435.v3
title: Latitudinal diversity gradients of plant pathogen and ectomycorrhizal fungi and their association with plant species richness in forest ecosystems of China

description: Original data was used to explore latitudinal diversity pattern of forest soil fungal pathogen across China.