cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19802302
title: Additional file 12 of Bulk and single-cell transcriptome profiling reveal necroptosis-based molecular classification, tumor microenvironment infiltration characterization, and prognosis prediction in colorectal cancer

description: Additional file 12. Supplementary Table S3. Prognostic values of Necroptosis-related genes
DOI: 10.6084/m9.figshare.19802305
title: Additional file 13 of Bulk and single-cell transcriptome profiling reveal necroptosis-based molecular classification, tumor microenvironment infiltration characterization, and prognosis prediction in colorectal cancer

description: Additional file 13. Supplementary Table S4. 475 prognostic genes grouped into signature genes A and C
DOI: 10.6084/m9.figshare.19802305.v1
title: Additional file 13 of Bulk and single-cell transcriptome profiling reveal necroptosis-based molecular classification, tumor microenvironment infiltration characterization, and prognosis prediction in colorectal cancer

description: Additional file 13. Supplementary Table S4. 475 prognostic genes grouped into signature genes A and C
DOI: 10.6084/m9.figshare.19802299
title: Additional file 11 of Bulk and single-cell transcriptome profiling reveal necroptosis-based molecular classification, tumor microenvironment infiltration characterization, and prognosis prediction in colorectal cancer

description: Additional file 11. Supplementary Table S2. 33 necroptosis-related genes.
DOI: 10.17909/ghtr-b519
title: Data from paper "Hubble Space Telescope images of SN 1987A: Evolution of the ejecta and the equatorial ring from 2009 to 2022"
DOI: 10.6084/m9.figshare.19802299.v1
title: Additional file 11 of Bulk and single-cell transcriptome profiling reveal necroptosis-based molecular classification, tumor microenvironment infiltration characterization, and prognosis prediction in colorectal cancer

description: Additional file 11. Supplementary Table S2. 33 necroptosis-related genes.
DOI: 10.6084/m9.figshare.19802314
title: Additional file 15 of Bulk and single-cell transcriptome profiling reveal necroptosis-based molecular classification, tumor microenvironment infiltration characterization, and prognosis prediction in colorectal cancer

description: Additional file 15. Supplementary Table S6. Primers in this study.
DOI: 10.6084/m9.figshare.19802314.v1
title: Additional file 15 of Bulk and single-cell transcriptome profiling reveal necroptosis-based molecular classification, tumor microenvironment infiltration characterization, and prognosis prediction in colorectal cancer

description: Additional file 15. Supplementary Table S6. Primers in this study.
DOI: 10.17909/4k6w-pj95
title: Data from paper "Hubble Space Telescope images of SN 1987A: Evolution of the ejecta and the equatorial ring from 2009 to 2022"
DOI: 10.15151/esrf-dc-1534174186
title: ESRF Data Policy 2024

description: The ESRF data policy covers the following topics:
• Data ownership
• Data curation
• Data archiving
• Open access to data
The updated policy, endorsed by the ESRF management, Scientific Advisory Committee and the Council in 2023, is an update of the first ESRF data policy of 2015. The previous ESRF data policy was based on the recommendations of the PaN-data Europe Strategic Working Group common framework for scientific data management at photon and neutron facilities. The updated policy includes recommendations from the PaNOSC FAIR Research Data Policy framework [1]. The main objective of this policy is to make ESRF open data FAIR: Findable, Accessible, Interoperable and Reusable.
The policy defined in this document applies to all data collected at ESRF in the frame of publicly funded research starting from 1 January 2024. A separate policy document is available for commercial access.
[1] https://zenodo.org/doi/10.5281/zenodo.3826039
DOI: 10.6084/m9.figshare.21546730
title: Additional file 3 of Downregulation of zinc finger protein 71 in laryngeal squamous cell carcinoma tissues and its potential molecular mechanism and clinical significance: a study based on immunohistochemistry staining and data mining

description: Additional file 3: Table S3. Expression values of ZNF71 extracted from included datasets.
DOI: 10.6084/m9.figshare.21546730.v1
title: Additional file 3 of Downregulation of zinc finger protein 71 in laryngeal squamous cell carcinoma tissues and its potential molecular mechanism and clinical significance: a study based on immunohistochemistry staining and data mining

description: Additional file 3: Table S3. Expression values of ZNF71 extracted from included datasets.
DOI: 10.5281/zenodo.10663009
title: Reductive Dechlorination of Chlorinated Ethenes at the Sulfidated Zero-Valent Iron Surface: DFT Calculations

description: This dataset contains the input and output files of density functional theory (DFT) calculations supporting the research published in the peer-reviewed article "Reductive Dechlorination of Chlorinated Ethenes at the Sulfidated Zero-Valent Iron Surface: A Mechanistic DFT Study" by M. Brumovský and D. Tunega, available at DOI 10.1021/acs.jpcc.4c00865. Please cite this article when using the dataset.

This dataset includes the following data:*  Structures and energies of various surface slab models, encompassing pristine and sulfidated iron surfaces (Fe(110), S-in-Fe(110), S-on-Fe(110), and S1/8ML-Fe(110)).*  Structures and energies of isolated chlorinated ethene molecules (PCE, TCE, cis-DCE, and trans-DCE).*  Adsorption configurations of chlorinated ethenes and their dechlorination products at the modeled surfaces.*  Reaction profiles of chlorinated ethene dechlorination reactions using the CI-NEB method. *  Implicit solvation calculations for surface slab models, isolated chlorinated ethene molecules, their adsorption complexes, and the adsorbed dechlorination products and transition states.*  Frequency calculations of the adsorbed chlorinated ethenes and their dechlorination transition states.*  High-accuracy calculations of the reaction barriers at S sites using the SCAN functional for method benchmarking.*  In specific cases, data related to charge analysis and density of states calculations.

Files are organized according to the respective modeled surfaces. The final geometry data can be found in the CONTCAR files, while energy data can be found in the OUTCAR files. Please note that the POTCAR files are not allowed to be made publicly accessible but are specified within the OUTCAR files. For additional details about input and output files, refer to the VASP manual. 

Funding: This research received support from the Austrian Science Fund (FWF) under project M 2892-N. The Vienna Scientific Cluster (Project No. 70544) is gratefully acknowledged for providing computational resources. 

Terms of use: These data are provided "as is", without any warranty. This dataset is provided under the Creative Commons Attribution 4.0 International license.
DOI: 10.5281/zenodo.10663010
title: Reductive Dechlorination of Chlorinated Ethenes at the Sulfidated Zero-Valent Iron Surface: DFT Calculations

description: This dataset contains the input and output files of density functional theory (DFT) calculations supporting the research published in the peer-reviewed article "Reductive Dechlorination of Chlorinated Ethenes at the Sulfidated Zero-Valent Iron Surface: A Mechanistic DFT Study" by M. Brumovský and D. Tunega, available at DOI 10.1021/acs.jpcc.4c00865. Please cite this article when using the dataset.

This dataset includes the following data:*  Structures and energies of various surface slab models, encompassing pristine and sulfidated iron surfaces (Fe(110), S-in-Fe(110), S-on-Fe(110), and S1/8ML-Fe(110)).*  Structures and energies of isolated chlorinated ethene molecules (PCE, TCE, cis-DCE, and trans-DCE).*  Adsorption configurations of chlorinated ethenes and their dechlorination products at the modeled surfaces.*  Reaction profiles of chlorinated ethene dechlorination reactions using the CI-NEB method. *  Implicit solvation calculations for surface slab models, isolated chlorinated ethene molecules, their adsorption complexes, and the adsorbed dechlorination products and transition states.*  Frequency calculations of the adsorbed chlorinated ethenes and their dechlorination transition states.*  High-accuracy calculations of the reaction barriers at S sites using the SCAN functional for method benchmarking.*  In specific cases, data related to charge analysis and density of states calculations.

Files are organized according to the respective modeled surfaces. The final geometry data can be found in the CONTCAR files, while energy data can be found in the OUTCAR files. Please note that the POTCAR files are not allowed to be made publicly accessible but are specified within the OUTCAR files. For additional details about input and output files, refer to the VASP manual. 

Funding: This research received support from the Austrian Science Fund (FWF) under project M 2892-N. The Vienna Scientific Cluster (Project No. 70544) is gratefully acknowledged for providing computational resources. 

Terms of use: These data are provided "as is", without any warranty. This dataset is provided under the Creative Commons Attribution 4.0 International license.
DOI: 10.6084/m9.figshare.25260040
title: 20240222_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.25260040.v1
title: 20240222_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.17909/jrz3-bx13
title: Data from paper "Hubble Space Telescope images of SN 1987A: Evolution of the ejecta and the equatorial ring from 2009 to 2022"
DOI: 10.6084/m9.figshare.12986620.v1
title: Additional file 3 of Development of EST-SSR markers and association mapping with floral traits in Syringa oblata

description: Additional file 3: Table S1. Nine hundred thirty-two pairs of SSR marker information developed in the transcriptome of S. oblata.
DOI: 10.6084/m9.figshare.12986613
title: Additional file 2 of Expression correlation attenuates within and between key signaling pathways in chronic kidney disease

description: Table S1. Clinical and demographic baseline characteristics of controls and patients with CKD. Results are expressed as the means ± SD, *P&lt; 0.05, **P&lt; 0.01. Table S2. Except GCLM, all 44 hub genes in early CKD pathway-wise co-expression networks lost their hub status in late CKD. These genes were identified as differentially coexpressed genes by DCGL as well. Table S3. Correlation-attenuated gene pairs that traverse pathway boundaries.
DOI: 10.6084/m9.figshare.12986613.v1
title: Additional file 2 of Expression correlation attenuates within and between key signaling pathways in chronic kidney disease

description: Table S1. Clinical and demographic baseline characteristics of controls and patients with CKD. Results are expressed as the means ± SD, *P&lt; 0.05, **P&lt; 0.01. Table S2. Except GCLM, all 44 hub genes in early CKD pathway-wise co-expression networks lost their hub status in late CKD. These genes were identified as differentially coexpressed genes by DCGL as well. Table S3. Correlation-attenuated gene pairs that traverse pathway boundaries.
DOI: 10.34683/sr2302
title: StoneRounds Case: SR2302
title: MIDD

description: StoneRounds Case SR2302 was diagnosed with MIDD likely caused by mutations in the gene: MT-TL1.
DOI: 10.6084/m9.figshare.12986620
title: Additional file 3 of Development of EST-SSR markers and association mapping with floral traits in Syringa oblata

description: Additional file 3: Table S1. Nine hundred thirty-two pairs of SSR marker information developed in the transcriptome of S. oblata.
DOI: 10.6084/m9.figshare.6695192
title: MOESM1 of Genome-scale metabolic model analysis indicates low energy production efficiency in marine ammonia-oxidizing archaea

description: Additional file 1: Table S1. Transport reactions in the model for the exchange of metabolites between the cell and the environment. Table S2. Biomass components and their coefficients.
DOI: 10.3886/e113278
title: Replication data for: The Impact of Nearly Universal Insurance Coverage on Health Care Utilization: Evidence from Medicare

description: The onset of Medicare eligibility at age 65 leads to sharp changes in the health insurance coverage of the US population. These changes lead to increases in the use of medical services, with a pattern of gains across socioeconomic groups that varies by type of service. While routine doctor visits increase more for groups that previously lacked insurance, hospital admissions for relatively expensive procedures like bypass surgery and joint replacement increase more for previously insured groups that are more likely to have supplementary coverage after 65, reflecting the relative generosity of their combined insurance package under Medicare. (JEL I11, I18)
DOI: 10.3886/e113278v1-146402
title: Replication data for: The Impact of Nearly Universal Insurance Coverage on Health Care Utilization: Evidence from Medicare

description: The onset of Medicare eligibility at age 65 leads to sharp changes in the health insurance coverage of the US population. These changes lead to increases in the use of medical services, with a pattern of gains across socioeconomic groups that varies by type of service. While routine doctor visits increase more for groups that previously lacked insurance, hospital admissions for relatively expensive procedures like bypass surgery and joint replacement increase more for previously insured groups that are more likely to have supplementary coverage after 65, reflecting the relative generosity of their combined insurance package under Medicare. (JEL I11, I18)
DOI: 10.6084/m9.figshare.25260109
title: Supplementary Material for: Gestational Age-Related Urinary Peptidome Changes in Preterm and Term Born Infants

description: <b><i>Introduction:</i></b> Preterm infants are at risk for a variety of somatic and neurological disorders. In recent years, biofluid proteomics has emerged as a potential diagnostic tool for biomarker analysis. The aim of this study was to determine gestational age (GA)-related patterns of the urinary peptidome in preterm infants for researching potential novel prognostic biomarkers. <b><i>Methods:</i></b> We performed urinary peptidomics in longitudinal samples of 24 preterm (mean GA weeks 28 + 1 [24+1–31 + 6]) and 27 term born controls (mean GA weeks 39 + 2 [37+0–41 + 1]) using capillary electrophoresis combined with mass spectrometry (CE-MS). Peptides were sequenced using CE-MS/MS or LC-MS/MS analysis and were deposited, matched, and annotated in a Microsoft SQL database for statistical analysis. We compared their abundance in urine of preterm and term born infants and performed a validation analysis as well as correlations to GA and clinical risk scores. <b><i>Results:</i></b> Our results confirmed significant differences in the abundance of peptides and the hypothesis of age-dependent urinary peptidome changes in preterm and term infants. In preterm infants, <i>SLC38A10 (solute carrier family 38 member 10)</i> is one of the most abundant peptides. Combined urinary peptides correlated with clinical risk scores (<i>p</i> &lt; 0.05). <b><i>Conclusion:</i></b> This is the first study reporting GA-related urinary peptidome changes of preterm infants detected by CE-MS and a modulation of the peptidome with GA. Further research is required to locate peptidome clusters correlated with specific clinical complications and long-term outcome. This may identify preterm infants at higher risk for adverse outcome who would benefit from early intervention.
DOI: 10.6084/m9.figshare.22718008
title: PET/CT data for PDL auto-segmentation project

description: Data for paper corresponding to: Application of simultaneous uncertainty quantification and segmentation for oropharyngeal cancer use-case with Bayesian deep learning. Paper link: https://www.medrxiv.org/content/10.1101/2023.02.20.23286188v1 (will be updated with final manuscript when published). This dataset is comprised of 67 (anonymized) head and neck cancer cases from MD Anderson Cancer Center. It was used as an external test set for the project. Each case contains a CT image, PET image, and primary gross tumor volume segmentation (binary mask), all in NIfTI format. These data were used as an independent test set for the deep learning algorithms in our study. The images and masks were cropped to be consistent with the 2021 HECKTOR Challenge data formatting. Notably, these cases were used in part for the MDA contribution to the 2022 edition of the HECKTOR Challenge.In addition, two CSV files are provided for deep learning model outputs generated from the development and external datasets for this project.
DOI: 10.6084/m9.figshare.6695228
title: Additional file 2: of DeepCRISPR: optimized CRISPR guide RNA design by deep learning

description: Detailed comparison results for sgRNA on-target efficacy prediction and off-target site prediction. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.6695237
title: MOESM3 of Genome-scale metabolic model analysis indicates low energy production efficiency in marine ammonia-oxidizing archaea

description: Additional file 3. Model NmrFL413 in excel format.
DOI: 10.6084/m9.figshare.6695237.v1
title: MOESM3 of Genome-scale metabolic model analysis indicates low energy production efficiency in marine ammonia-oxidizing archaea

description: Additional file 3. Model NmrFL413 in excel format.
DOI: 10.6084/m9.figshare.6695267
title: Additional file 4: of DeepCRISPR: optimized CRISPR guide RNA design by deep learning

description: Detailed learned weights for feature saliency map with filtering of those positions without statistical significant by Fisherâ s exact test. (XLSX 6 kb)
DOI: 10.6084/m9.figshare.6695267.v1
title: Additional file 4: of DeepCRISPR: optimized CRISPR guide RNA design by deep learning

description: Detailed learned weights for feature saliency map with filtering of those positions without statistical significant by Fisherâ s exact test. (XLSX 6 kb)
DOI: 10.6084/m9.figshare.12986725
title: Additional file 4 of Identification of lipid biomarker from serum in patients with chronic obstructive pulmonary disease

description: Additional file 4.
DOI: 10.6084/m9.figshare.12986725.v1
title: Additional file 4 of Identification of lipid biomarker from serum in patients with chronic obstructive pulmonary disease

description: Additional file 4.
DOI: 10.6084/m9.figshare.24072335.v1
title: Fracture resistance and failure pattern of endodontically treated maxillary premolars restored with transfixed glass fiber post: an <i>in vitro</i> and finite element analysis

description: The aims of the study were to determine the effect of different types of endodontic sealers and the presence of a horizontal glass fiber post (HGFP) on the fracture resistance and fracture pattern of mesio-occluso-distal (MOD) restored upper premolars and to analyze the stress distribution. Sixty extracted upper premolars received root canal treatment (RCT) and a MOD cavity preparation. All MOD cavities were restored with the same composite resin (CR). The 60 teeth were divided randomly into 6 groups (<i>n</i> = 10); Group1= AH Plus sealer; Group 2= TotalFill BC sealer; Group 3= BioRoot RCS sealer; Group 4= AH plus sealer + HGFP; Group 5= TotalFill BC sealer + HGFP; and, Group 6= Bio Root RCS sealer + HGFP. All specimens were thermocycled and subjected to cyclic loading. Next, the specimens were subjected to a static load using a universal testing machine. Data were analyzed using two-way ANOVA. Two micro-CTs of the same upper premolar, one without the HGFP and later one with HGFP inserted were made and used to create two finite element (FE) models. For the fracture resistance, two-way ANOVA revealed significant differences for the effect of HGFP (<i>p</i> = 0.029), but no differences for the effect of root canal sealer type (<i>p</i> = 0.561). The HGFP groups showed higher restorable fracture compared to groups without HGFP (<i>p</i> = 0.013). Finite element analysis showed that the inclusion of HGFP reduces stress concentration at the occlusal interface and cervical region. Therefore, it can be concluded that HGFP significantly increased the fracture resistance of endodontically treated upper premolars with MOD cavities and reduced the risk for non-restorable fractures. The FE analysis supports the mechanical test results.
DOI: 10.6084/m9.figshare.24072335
title: Fracture resistance and failure pattern of endodontically treated maxillary premolars restored with transfixed glass fiber post: an <i>in vitro</i> and finite element analysis

description: The aims of the study were to determine the effect of different types of endodontic sealers and the presence of a horizontal glass fiber post (HGFP) on the fracture resistance and fracture pattern of mesio-occluso-distal (MOD) restored upper premolars and to analyze the stress distribution. Sixty extracted upper premolars received root canal treatment (RCT) and a MOD cavity preparation. All MOD cavities were restored with the same composite resin (CR). The 60 teeth were divided randomly into 6 groups (<i>n</i> = 10); Group1= AH Plus sealer; Group 2= TotalFill BC sealer; Group 3= BioRoot RCS sealer; Group 4= AH plus sealer + HGFP; Group 5= TotalFill BC sealer + HGFP; and, Group 6= Bio Root RCS sealer + HGFP. All specimens were thermocycled and subjected to cyclic loading. Next, the specimens were subjected to a static load using a universal testing machine. Data were analyzed using two-way ANOVA. Two micro-CTs of the same upper premolar, one without the HGFP and later one with HGFP inserted were made and used to create two finite element (FE) models. For the fracture resistance, two-way ANOVA revealed significant differences for the effect of HGFP (<i>p</i> = 0.029), but no differences for the effect of root canal sealer type (<i>p</i> = 0.561). The HGFP groups showed higher restorable fracture compared to groups without HGFP (<i>p</i> = 0.013). Finite element analysis showed that the inclusion of HGFP reduces stress concentration at the occlusal interface and cervical region. Therefore, it can be concluded that HGFP significantly increased the fracture resistance of endodontically treated upper premolars with MOD cavities and reduced the risk for non-restorable fractures. The FE analysis supports the mechanical test results.
DOI: 10.17909/vv4m-mm08
title: Data from paper "Hubble Space Telescope images of SN 1987A: Evolution of the ejecta and the equatorial ring from 2009 to 2022"
DOI: 10.5281/zenodo.10682889
title: R-code and data for the replication of the food import vulnerability index developed by Christian Ritzel, Anke Möhring and Albert von Ow

description: The zip file contains R-codes and datasets for the replication of the food import vulnerability index developed by Christian Ritzel, Anke Möhring and Albert von Ow.

If you have questions on R-codes and data, please contact christian.ritzel@agroscope.admin.ch, albert.vonow@agroscope.admin.ch or anke.moehring@fibl.org
DOI: 10.5281/zenodo.10682890
title: R-code and data for the replication of the food import vulnerability index developed by Christian Ritzel, Anke Möhring and Albert von Ow

description: The zip file contains R-codes and datasets for the replication of the food import vulnerability index developed by Christian Ritzel, Anke Möhring and Albert von Ow.

If you have questions on R-codes and data, please contact christian.ritzel@agroscope.admin.ch, albert.vonow@agroscope.admin.ch or anke.moehring@fibl.org