cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3833865.v1
title: Tsanov 2016 data.zip

description: The data represent:<br>1) single unit-recordings of place cells from continuous T-maze<br>2) optostimulation in VTA of TH::cre rats injected with pAAV5-Ef1a-DIO-hChR2(E123T/T159C)-EYFP-WPRE-pA<br>3) immunostaining in VTA of TH::cre rats injected with pAAV5-Ef1a-DIO-hChR2(E123T/T159C)-EYFP-WPRE-pA <br>4) optoinhibition in VTA of TH::cre rats injected with AAV8-EF1a-DIO-iC++-TS-EYFP<br>5) immunostaining in VTA of TH::cre rats injected with AAV8-EF1a-DIO-iC++-TS-EYFP<br>6) regular optostimulation in TH::cre rats injected with pAAV5-Ef1a-DIO-hChR2(E123T/T159C)-EYFP-WPRE-pA <br>7) hippocampal place cells responses to stimulation of VTA for open arena spatial stimulation<br>8) CA1 place cells for optoinhibition group (iC++) and control group (YFP) of rats from rectangular-shaped linear track <br>
DOI: 10.6084/m9.figshare.3833835
title: RawData_IndData

description: The attached files correspond to the data sets analyzed in the manuscript entitled: "Angling-induced selection can mitigate the invasion potential of bold phenotypes" by Barbara Koeck, Libor Závorka, David Aldvén, Joacim Näslund, Robert Arlinghaus, Svante Winberg, Per-Ove Thörnqvist, Björn Thrandur Björnsson, Jörgen I. Johnsson.
DOI: 10.7910/dvn/v1rjpf/ptm3wj
title: mea20170130_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3833814
title: RawData_AnglingExp1.xlsx

description: The attached files correspond to the data sets analyzed in the manuscript entitled: "Angling-induced selection can mitigate the invasion potential of bold phenotypes" by Barbara Koeck, Libor Závorka, David Aldvén, Joacim Näslund, Robert Arlinghaus, Svante Winberg, Per-Ove Thörnqvist, Björn Thrandur Björnsson, Jörgen I. Johnsson.
DOI: 10.6084/m9.figshare.3833814.v1
title: RawData_AnglingExp1.xlsx

description: The attached files correspond to the data sets analyzed in the manuscript entitled: "Angling-induced selection can mitigate the invasion potential of bold phenotypes" by Barbara Koeck, Libor Závorka, David Aldvén, Joacim Näslund, Robert Arlinghaus, Svante Winberg, Per-Ove Thörnqvist, Björn Thrandur Björnsson, Jörgen I. Johnsson.
DOI: 10.6084/m9.figshare.3833835.v1
title: RawData_IndData

description: The attached files correspond to the data sets analyzed in the manuscript entitled: "Angling-induced selection can mitigate the invasion potential of bold phenotypes" by Barbara Koeck, Libor Závorka, David Aldvén, Joacim Näslund, Robert Arlinghaus, Svante Winberg, Per-Ove Thörnqvist, Björn Thrandur Björnsson, Jörgen I. Johnsson.
DOI: 10.7910/dvn/v1rjpf/9klxsf
title: mea20170512_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3833763
title: PlosOne_dataset.xlsx

description: primary health care article
DOI: 10.7910/dvn/v1rjpf/o8pkdj
title: mea20171113_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/tlvg18
title: mea20170313_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3833763.v1
title: PlosOne_dataset.xlsx

description: primary health care article
DOI: 10.7910/dvn/v1rjpf/vfju5r
title: mea20171206_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3833751
title: Part one: Films of a focal pair of adult Barn swallows (Hirundo rustica) feeding their chicks, summer 2010.

description: Film of a focal pair of Barn swallows (Hirundo rustica) feeding their chicks during the summer of 2010. The work has been published and is available at the link below.The paper gives the full methods.<br>Films were recorded by Shane Healy and Peter Donovan.
DOI: 10.7910/dvn/v1rjpf/wqfxzt
title: mea20171102_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/oe4oom
title: mea20171010_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3833751.v2
title: Part one: Films of a focal pair of adult Barn swallows (Hirundo rustica) feeding their chicks, summer 2010.

description: Film of a focal pair of Barn swallows (Hirundo rustica) feeding their chicks during the summer of 2010. The work has been published and is available at the link below.The paper gives the full methods.<br>Films were recorded by Shane Healy and Peter Donovan.
DOI: 10.7910/dvn/v1rjpf/0jqiqz
title: mea20170318_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/b1s430
title: mea20170117_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3833751.v3
title: Films of a focal pair of adult Barn swallows (Hirundo rustica) feeding their chicks, summer 2010.

description: Film of a focal pair of Barn swallows (Hirundo rustica) feeding their chicks during the summer of 2010. The work has been published and is available at the link below.The paper gives the full methods.<br>Films were recorded by Shane Healy and Peter Donovan.
DOI: 10.6084/m9.figshare.3833715
title: A Spatio-Temporal Comparison of suicide mortality in Parana state, Brazil

description: Databases used to perform the spatial analysis and baysen network of mortality by suicide in the state of Paraná.
DOI: 10.6084/m9.figshare.3833751.v5
title: Part one: Films of a focal pair of adult Barn swallows (Hirundo rustica) feeding their chicks, summer 2010.

description: Film of a focal pair of Barn swallows (Hirundo rustica) feeding their chicks during the summer of 2010. The work has been published and is available at the link below.The paper gives the full methods.<br>Films were recorded by Shane Healy and Peter Donovan.
DOI: 10.7910/dvn/v1rjpf/qefn9x
title: mea20170810_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3833751.v4
title: Part one: Films of a focal pair of adult Barn swallows (Hirundo rustica) feeding their chicks, summer 2010.

description: Film of a focal pair of Barn swallows (Hirundo rustica) feeding their chicks during the summer of 2010. The work has been published and is available at the link below.The paper gives the full methods.<br>Films were recorded by Shane Healy and Peter Donovan.
DOI: 10.6084/m9.figshare.3833643
title: “Fifth estate” and “fifth power”: removing the quotation marks

description: The world (wide) web generates a new “estate”, to which a huge part of mankind belongs. Unlike the other “estates”, any human being even a child of own free will might joint it or not. That amorphous, “liquid”, non-professional, and virtual “estate” is the real “power” in the world, the most powerful one. The world web as a power overcomes the classical three powers and also the so-called fourth one, media. The trends in favor of it are even stronger than its real power and influence in the contemporary world.
DOI: 10.7910/dvn/v1rjpf/ilocul
title: mea20171006_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3833643.v1
title: “Fifth estate” and “fifth power”: removing the quotation marks

description: The world (wide) web generates a new “estate”, to which a huge part of mankind belongs. Unlike the other “estates”, any human being even a child of own free will might joint it or not. That amorphous, “liquid”, non-professional, and virtual “estate” is the real “power” in the world, the most powerful one. The world web as a power overcomes the classical three powers and also the so-called fourth one, media. The trends in favor of it are even stronger than its real power and influence in the contemporary world.
DOI: 10.6084/m9.figshare.3833586
title: USA Infectious Disease Transmission Data (corrected)

description: This is a correction to the data published in Thornhill and Fincher (2014) in Appendix 3 of Section 5.25, pages 163-165. We redid the calculation of the nonzoonotic in the following way. We determined the population-adjusted case rate for the different transmission categories: human specific, multi-host, and zoonotic. Then we summed the case rates for the human specific and multi-host diseases to represent “nonzoonotic”. Then we standardised this new ’nonzoonotic’ value for each year and then averaged this z-score across the years for each state. The error in the prior, published data found in Thornhill and Fincher (Appendix 3 of section 5.25) was that we standardised the human specific and multi-host and then summed the z-scores which gives the multi-host scores too much undue influence. E.g., let’s say the human specific diseases had something like 2000 cases for a state and the multihost diseases had only 20 cases, if you z-score them separately you could have the same z-score for the human specific and the multihost for that state (e.g., each could get 1.2). If you then add these two together (2.4) you get a different score than if you added all the cases together (human specific cases + multi-host cases) and then z-scored the state values. In this new data file (USA_Transmission_Data_corrected.xlsx), we standardised the values after we summed them, correcting the problem. The human specific, multi-host, and zoonotic values in this 'USA_Transmission_Data_corrected.xlsx' file are identical to that published in Thornhill and Fincher (2014). Also, this spreadsheet includes both “with DC” and “without DC” data. We tend to use the “without DC” data unless there’s a strong reason to include it.<br>Thornhill, R., & Fincher, C. L. (2014). The parasite-stress theory of values and sociality: Infectious disease, history and human values worldwide. Springer.
DOI: 10.7910/dvn/v1rjpf/ulqpqd
title: mea20171024_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3833586.v1
title: USA Infectious Disease Transmission Data (corrected)

description: This is a correction to the data published in Thornhill and Fincher (2014) in Appendix 3 of Section 5.25, pages 163-165. We redid the calculation of the nonzoonotic in the following way. We determined the population-adjusted case rate for the different transmission categories: human specific, multi-host, and zoonotic. Then we summed the case rates for the human specific and multi-host diseases to represent “nonzoonotic”. Then we standardised this new ’nonzoonotic’ value for each year and then averaged this z-score across the years for each state. The error in the prior, published data found in Thornhill and Fincher (Appendix 3 of section 5.25) was that we standardised the human specific and multi-host and then summed the z-scores which gives the multi-host scores too much undue influence. E.g., let’s say the human specific diseases had something like 2000 cases for a state and the multihost diseases had only 20 cases, if you z-score them separately you could have the same z-score for the human specific and the multihost for that state (e.g., each could get 1.2). If you then add these two together (2.4) you get a different score than if you added all the cases together (human specific cases + multi-host cases) and then z-scored the state values. In this new data file (USA_Transmission_Data_corrected.xlsx), we standardised the values after we summed them, correcting the problem. The human specific, multi-host, and zoonotic values in this 'USA_Transmission_Data_corrected.xlsx' file are identical to that published in Thornhill and Fincher (2014). Also, this spreadsheet includes both “with DC” and “without DC” data. We tend to use the “without DC” data unless there’s a strong reason to include it.<br>Thornhill, R., & Fincher, C. L. (2014). The parasite-stress theory of values and sociality: Infectious disease, history and human values worldwide. Springer.
DOI: 10.7910/dvn/v1rjpf/wqtvq3
title: mea20171106_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3833580
title: Supplementary Material for: Nationwide Evaluation of Congenital Hypothyroidism Screening during Neonatal Extracorporeal Membrane Oxygenation

description: <i>Background:</i> Thyroid hormone concentrations may deviate from normal values during critical illness. This condition is known as nonthyroidal illness syndrome (NTIS), and it can influence the results of screening for congenital hypothyroidism (CH) during neonatal extracorporeal membrane oxygenation (ECMO). <i>Objectives:</i> To determine the incidence of aberrant CH screening results in ECMO-treated neonates, to identify possible determinants, and to follow up patients with abnormal thyroid hormone concentrations. <i>Methods:</i> In this retrospective cohort study, we included 168 ECMO-treated neonates admitted from 2004 to 2014 and screened by protocol and divided them into the following 3 groups: group 1 (screened during ECMO, n = 107), group 2 (screened shortly before ECMO, n = 26), and group 3 (screened shortly after ECMO, n = 35). <i>Results:</i> CH screening results were aberrant in 67.3% (72/107) of the neonates screened during ECMO, in 73.1% (19/26) of the neonates screened before ECMO, and in 31.4% (11/35) of the neonates screened after ECMO (p &lt; 0.001). Of the neonates with an aberrant screening result, all but 2 (i.e. 98%) had a low thyroxine concentration with a normal thyrotropin concentration at screening, as is seen in NTIS. None was diagnosed with CH. Mortality did not significantly differ between neonates with an aberrant screening result (32.4%) and neonates with a normal screening result (22.7%; p = 0.18). Screening before ECMO (OR 5.92; 95% CI 1.93-18.20), screening during ECMO (OR 4.49; 95% CI 1.98-10.19), and a higher Pediatric Logistic Organ Dysfunction-2 score (OR 1.31; 95% CI 1.04-1.66) were associated with an aberrant screening result. <i>Conclusions:</i> Aberrant CH screening results were found in most ECMO-treated neonates screened before or during ECMO, which is likely due to NTIS. Follow-up of thyroid hormone concentrations is best started after recovery from critical illness. Our results suggest that thyroxine therapy is not required during ECMO.
DOI: 10.7910/dvn/v1rjpf/5m1bw1
title: mea20170524_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/9flpov
title: mea20170509_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3833571
title: Supplementary Material for: Modeling Caries Experience: Advantages of the Use of the Hurdle Model

description: In dental epidemiology, the decayed (D), missing (M), and filled (F) teeth or surfaces index (DFM index) is a frequently used measure. The DMF index is characterized by a strongly positive skewed distribution with a large stack of zero counts for those individuals without caries experience. Therefore, standard generalized linear models often lead to a poor fit. The hurdle regression model is a highly suitable class to model a DMF index, but its use is subordinated. We aim to overcome the gap between the suitability of the hurdle model to fit DMF indices and the frequency of its use in caries research. A theoretical introduction to the hurdle model is provided, and an extensive comparison with the zero-inflated model is given. Using an illustrative data example, both types of models are compared, with a special focus on interpretation of their parameters. Accompanying R code and example data are provided as online supplementary material.
DOI: 10.7910/dvn/v1rjpf/7zqriw
title: mea20170725_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3833571.v1
title: Supplementary Material for: Modeling Caries Experience: Advantages of the Use of the Hurdle Model

description: In dental epidemiology, the decayed (D), missing (M), and filled (F) teeth or surfaces index (DFM index) is a frequently used measure. The DMF index is characterized by a strongly positive skewed distribution with a large stack of zero counts for those individuals without caries experience. Therefore, standard generalized linear models often lead to a poor fit. The hurdle regression model is a highly suitable class to model a DMF index, but its use is subordinated. We aim to overcome the gap between the suitability of the hurdle model to fit DMF indices and the frequency of its use in caries research. A theoretical introduction to the hurdle model is provided, and an extensive comparison with the zero-inflated model is given. Using an illustrative data example, both types of models are compared, with a special focus on interpretation of their parameters. Accompanying R code and example data are provided as online supplementary material.
DOI: 10.6084/m9.figshare.3833556
title: Functional (PBR) MHC class I distances between reed warbler females and their social and extra-pair mates

description: Functional distances of MHC class I peptide binding regions (PBR) between each female and each male. The functional distances are based on physio-chemical binding properties of the amino acids in the PBR. Notations: Female (F), male (M), social male (sM), extra-pair male (EPP male), females with extra-pair offspring in their nests (Females with EPP), females without extra-pair offspring in their nests (Females without EPP)
DOI: 10.7910/dvn/v1rjpf/2wcmiu
title: mea20170220_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/zy6jr9
title: mea20170922_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/jpprqq
title: mea20170401_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/kt1074
title: mea20170909_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3833556.v1
title: New draft item

description: Data from: "Cryptic female choice for MHC compatibility: Offspring antigenic recognition repertoire is increased through extra-pair matings" by Halupka et al.<br>
DOI: 10.7910/dvn/v1rjpf/qmfyjb
title: mea20170419_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3833556.v2
title: Dataset provided as a part of the publication "Cryptic female choice for MHC compatibility: Offspring antigenic recognition repertoire is increased through extra-pair matings"

description: Data from: "Cryptic female choice for MHC compatibility: Offspring antigenic recognition repertoire is increased through extra-pair matings" by Halupka et al.<br>
DOI: 10.7910/dvn/v1rjpf/qs3jre
title: mea20170827_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3833556.v3
title: Functional (PBR) MHC class I distances between reed warbler females and their social and extra-pair mates

description: Data from: "Cryptic female choice for MHC compatibility: Offspring antigenic recognition repertoire is increased through extra-pair matings" by Halupka et al.<br>
DOI: 10.7910/dvn/v1rjpf/l60tng
title: mea20170921_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3833556.v5
title: Functional (PBR) MHC class I distances between reed warbler females and their social and extra-pair mates

description: Functional distances of MHC class I peptide binding regions (PBR) between each female and each male. The functional distances are based on physio-chemical binding properties of the amino acids in the PBR. Notations: Female (F), male (M), social male (sM), extra-pair male (EPP male), females with extra-pair offspring in their nests (Females with EPP), females without extra-pair offspring in their nests (Females without EPP)
DOI: 10.7910/dvn/v1rjpf/aecena
title: mea20171223_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3833556.v4
title: Data from: "Cryptic female choice for MHC compatibility: Offspring antigenic recognition repertoire is increased through extra-pair matings"

description: Functional (PBR) MHC class I distances between reed warbler females and their social and extra-pair mates<br>
DOI: 10.7910/dvn/v1rjpf/wqcyj0
title: mea20170210_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3833520
title: <i>Ab initio</i> calculations to support accurate modelling of the rovibronic spectroscopy calculations of vanadium monoxide (VO)

description: Accurate knowledge of the rovibronic near-infrared and visible spectra of vanadium monoxide (VO) is very important for studies of cool stellar and hot planetary atmospheres. Here, the required <i>ab initio</i> dipole moment and spin-orbit coupling curves for VO are produced. This data forms the basis of a new VO line list considering 13 different electronic states and containing over 277 million transitions. Open shell transition, metal diatomics are challenging species to model through <i>ab initio</i> quantum mechanics due to the large number of low-lying electronic states, significant spin–orbit coupling and strong static and dynamic electron correlation. Multi-reference configuration interaction methodologies using orbitals from a complete active space self-consistent-field (CASSCF) calculation are the standard technique for these systems. We use different state-specific or minimal-state CASSCF orbitals for each electronic state to maximise the calculation accuracy. The off-diagonal dipole moment controls the intensity of electronic transitions. We test finite-field off-diagonal dipole moments, but found that (1) the accuracy of the excitation energies were not sufficient to allow accurate dipole moments to be evaluated and (2) computer time requirements for perpendicular transitions were prohibitive. The best off-diagonal dipole moments are calculated using wavefunctions with different CASSCF orbitals.
DOI: 10.6084/m9.figshare.3833520.v1
title: <i>Ab initio</i> calculations to support accurate modelling of the rovibronic spectroscopy calculations of vanadium monoxide (VO)

description: Accurate knowledge of the rovibronic near-infrared and visible spectra of vanadium monoxide (VO) is very important for studies of cool stellar and hot planetary atmospheres. Here, the required <i>ab initio</i> dipole moment and spin-orbit coupling curves for VO are produced. This data forms the basis of a new VO line list considering 13 different electronic states and containing over 277 million transitions. Open shell transition, metal diatomics are challenging species to model through <i>ab initio</i> quantum mechanics due to the large number of low-lying electronic states, significant spin–orbit coupling and strong static and dynamic electron correlation. Multi-reference configuration interaction methodologies using orbitals from a complete active space self-consistent-field (CASSCF) calculation are the standard technique for these systems. We use different state-specific or minimal-state CASSCF orbitals for each electronic state to maximise the calculation accuracy. The off-diagonal dipole moment controls the intensity of electronic transitions. We test finite-field off-diagonal dipole moments, but found that (1) the accuracy of the excitation energies were not sufficient to allow accurate dipole moments to be evaluated and (2) computer time requirements for perpendicular transitions were prohibitive. The best off-diagonal dipole moments are calculated using wavefunctions with different CASSCF orbitals.
DOI: 10.7910/dvn/v1rjpf/eult7w
title: mea20171016_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/bhnyw2
title: mea20170918_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/3oy515
title: mea20170726_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/bh0pso
title: mea20170423_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/bttohs
title: mea20170530_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/woerry
title: mea20170404_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/l7ujoz
title: mea20170305_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/fdinnz
title: mea20170507_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/r2gyik
title: mea20170925_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/vpwgx1
title: mea20170427_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/orjwrs
title: mea20170905_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/sztwsj
title: mea20170214_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/56rpot
title: mea20170824_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/za2rlq
title: mea20170302_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/uayadj
title: mea20170811_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/qxmscn
title: mea20170611_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/69guk2
title: mea20170713_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3833337
title: Introduction to Ecology; A study of the relationship between hair colour and gender

description: Methods: To evaluate the relationship between hair colour and gender, 24 human subjects were asked to self-identify hair colour and gender. The study took place indoors in the ecology lab in the Lumbers Building at York University(room 118). Hypothesis: There is little correlation between hair colour and gender. Predictions:1) approximately equal ratios of males and females have the same natural hair colours. 2) there is more diversity in hair colours of females. <br>