cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/wy5-2cm-jny
title: Verrucaria marmorea (Scop.) Arnold

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/glf-vzk-emy
title: Rinodina sophodes (Ach.) A. Massal.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/jve-92j-4zq
title: Rinodina milvina (Wahlenb.) Th. Fr.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/0fl-gd4-yw2
title: Verrucaria obductilis (Nyl.) Zschacke

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/0xw-pmw-fgg
title: Verrucaria xyloxena Norman

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/7b9-g5x-ptv
title: Caloplaca lobulata (Flörke) Hellb.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/6nb-lnb-1wq
title: Verrucaria ruderum DC.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/rgx-7vv-r9b
title: Verrucaria zamenhofiana Clauzade & Cl. Roux

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/d5c-gxm-wcl
title: Rinodina sophodes (Ach.) A. Massal.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/03r-5w6-w69
title: Hydropunctaria scabra (Vĕzda) Keller, Gueidan & Thüs

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/bm8-7mn-kcm
title: Protothelenella corrosa (Körb.) H. Mayrhofer & Poelt

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/e12-4ds-bmw
title: Verrucaria ruderum DC.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/047-1vm-t0a
title: Rinodina malangica (Norman) Arnold

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/dc6-khv-y94
title: Trapeliopsis glaucolepidea (Nyl.) Gotth. Schneid.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/3w3-qw3-qv7
title: Trapeliopsis glaucolepidea (Nyl.) Gotth. Schneid.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/sd1-nnv-qh8
title: Trapeliopsis glaucolepidea (Nyl.) Gotth. Schneid.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/23y-4rm-2lv
title: Rinodina freyi H. Magn.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/8b9-dqz-fnx
title: Rinodina malangica (Norman) Arnold

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/f7m-gs6-vva
title: Trapeliopsis glaucolepidea (Nyl.) Gotth. Schneid.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/4gm-bg6-531
title: Rinodina malangica (Norman) Arnold

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/jnm-0lm-6nx
title: Verrucaria sphaerospora Anzi

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/cpx-7hp-w1e
title: Verrucaria perquisita (Norman) Ertz & Diederich

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/3lp-vpn-4l9
title: Rinodina capensis Hampe

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/w1t-xxc-a12
title: Rinodina capensis Hampe

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/x71-j5a-85n
title: Verrucaria elaeomelaena (A. Massal.) Arnold

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/q3l-t23-3d7
title: Rinodina sophodes (Ach.) A. Massal.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/q96-e0c-1yv
title: Rinodina orculata Poelt & M. Steiner

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.kwb2g5
title: Occurrence Download

description: A dataset containing 1808822 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "CoordinateUncertaintyInMeters 0.0-5170.0",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 1808822 records from 364 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000976-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ecuzha
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Coregonus oxyrinchus",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001009-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.82144/5856c85e
title: CRESLI marine mammal observations from whale watch cruises 2024

description: Original provider:
Coastal Research and Education Society of Long Island, Inc.

Dataset credits:
Coastal Research and Education Society of Long Island, Inc.

Abstract:
Cetacean sightings data for the waters off Montauk for July 2024 through mid-
September 2024
DOI: 10.25346/s6/7lo4t2/edbimm
title: info.json
DOI: 10.15468/dl.jekjma
title: Occurrence Download

description: A dataset containing 1429 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Machaerium isadelphum"
 ]
}

 The dataset includes 1429 records from 166 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035281-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25346/s6/7lo4t2/192thq
title: plane_8.jpg
DOI: 10.15468/dl.qemcze
title: Occurrence Download

description: A dataset containing 53589 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lupinus polyphyllus",
 "Country is Finland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 53589 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035257-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25346/s6/7lo4t2/v5mi4y
title: plane_7.jpg
DOI: 10.15468/dl.cdp25b
title: Occurrence Download

description: A dataset containing 3422 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lysimachia fortunei"
 ]
}

 The dataset includes 3422 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035282-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25346/s6/7lo4t2/dotxmd
title: plane_6.jpg
DOI: 10.25346/s6/7lo4t2/gshcfr
title: plane_5.jpg
DOI: 10.15468/dl.ksd3eb
title: Occurrence Download

description: A dataset containing 417109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Prunus padus"
 ]
}

 The dataset includes 417109 records from 1088 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035159-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25346/s6/7lo4t2/pfh7z5
title: plane_4.jpg
DOI: 10.25346/s6/7lo4t2/gdgzrf
title: plane_3.jpg
DOI: 10.15468/dl.4yhjgn
title: Occurrence Download

description: A dataset containing 894 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lupinus polyphyllus",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 894 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035283-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25346/s6/7lo4t2/wrtl10
title: plane_2.jpg
DOI: 10.25346/s6/7lo4t2/ft5pra
title: plane_1.jpg
DOI: 10.25346/s6/7lo4t2/3cmgsk
title: plane_0.jpg
DOI: 10.15468/dl.a3cf4d
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brachiaria brizantha",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 54 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035284-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25346/s6/7lo4t2/d0khgm
title: materials.png
DOI: 10.25346/s6/7lo4t2/ormmvc
title: info.json
DOI: 10.25346/s6/7lo4t2/hv5t3c
title: msXV_007v.relight
DOI: 10.25346/s6/7lo4t2/4lt1nr
title: msXV_007v_65_49.jpg
DOI: 10.25346/s6/7lo4t2/hf6m8d
title: msXV_007v_65_48.jpg
DOI: 10.25346/s6/7lo4t2/nwzlne
title: msXV_007v_65_47.jpg
DOI: 10.25346/s6/7lo4t2/qcv6hc
title: msXV_007v_65_46.jpg
DOI: 10.25346/s6/7lo4t2/ekib7w
title: msXV_007v_65_45.jpg
DOI: 10.25346/s6/7lo4t2/jm1fha
title: msXV_007v_65_44.jpg
DOI: 10.25346/s6/7lo4t2/6a4xrf
title: msXV_007v_65_43.jpg
DOI: 10.25346/s6/7lo4t2/5cyyup
title: msXV_007v_65_42.jpg
DOI: 10.25346/s6/7lo4t2/icg0cp
title: msXV_007v_65_41.jpg
DOI: 10.25346/s6/7lo4t2/m2bfma
title: msXV_007v_65_40.jpg
DOI: 10.25346/s6/7lo4t2/ut4npp
title: msXV_007v_65_39.jpg
DOI: 10.25346/s6/7lo4t2/vcorvg
title: msXV_007v_65_38.jpg
DOI: 10.25346/s6/7lo4t2/xvdm6v
title: msXV_007v_65_37.jpg
DOI: 10.25346/s6/7lo4t2/x1rfbo
title: msXV_007v_47_36.jpg
DOI: 10.25346/s6/7lo4t2/8m2uyy
title: msXV_007v_47_35.jpg
DOI: 10.25346/s6/7lo4t2/om2czy
title: msXV_007v_47_34.jpg
DOI: 10.25346/s6/7lo4t2/cjt8eq
title: msXV_007v_47_33.jpg
DOI: 10.25346/s6/7lo4t2/hwhzw9
title: msXV_007v_47_32.jpg
DOI: 10.25346/s6/7lo4t2/area0q
title: msXV_007v_47_31.jpg
DOI: 10.25346/s6/7lo4t2/3ujfjg
title: msXV_007v_47_30.jpg
DOI: 10.25346/s6/7lo4t2/kxdks9
title: msXV_007v_47_29.jpg
DOI: 10.5281/zenodo.16379985
title: Input data for ds-DNA virus MPRA analysis (https://github.com/osyafinkelberg/dsdna-mpra)

description: This dataset contains all raw input files required to reproduce the analyses in the dsDNA-MPRA project. It includes processed sequencing counts, annotations, and related input tables, to be placed under the data/raw/ directory of the project repository.

Some of the datasets used in this project originate from previously published studies. Full references and source details are provided in the associated manuscript on bioRxiv (bioRxiv: 10.1101/2025.07.20.665756v1).
DOI: 10.5281/zenodo.16379986
title: Input data for ds-DNA virus MPRA analysis (https://github.com/osyafinkelberg/dsdna-mpra)

description: This dataset contains all raw input files required to reproduce the analyses in the dsDNA-MPRA project. It includes processed sequencing counts, annotations, and related input tables, to be placed under the data/raw/ directory of the project repository.

Some of the datasets used in this project originate from previously published studies. Full references and source details are provided in the associated manuscript on bioRxiv (bioRxiv: 10.1101/2025.07.20.665756v1).
DOI: 10.25346/s6/7lo4t2/00nf8e
title: msXV_007v_47_28.jpg
DOI: 10.25346/s6/7lo4t2/fy97dt
title: msXV_007v_47_27.jpg
DOI: 10.25346/s6/7lo4t2/o5rjmd
title: msXV_007v_47_26.jpg
DOI: 10.25346/s6/7lo4t2/winaky
title: msXV_007v_47_25.jpg
DOI: 10.15468/dl.5sak7x
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sporobolus indicus",
 "Country is Niue",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035285-250717081556266/datasets/export for details.
DOI: 10.25346/s6/7lo4t2/bqwsxf
title: msXV_007v_31_23.jpg
DOI: 10.25346/s6/7lo4t2/srh8rc
title: msXV_007v_31_22.jpg
DOI: 10.25346/s6/7lo4t2/i3gpln
title: msXV_007v_31_21.jpg
DOI: 10.25346/s6/7lo4t2/tqzpyz
title: msXV_007v_31_20.jpg
DOI: 10.25346/s6/7lo4t2/mj99if
title: msXV_007v_31_19.jpg
DOI: 10.25346/s6/7lo4t2/hqiohd
title: msXV_007v_31_18.jpg
DOI: 10.25346/s6/7lo4t2/qzdtqq
title: msXV_007v_31_17.jpg
DOI: 10.25346/s6/7lo4t2/wfmzyt
title: msXV_007v_31_16.jpg
DOI: 10.25346/s6/7lo4t2/joxuwq
title: msXV_007v_31_15.jpg
DOI: 10.25346/s6/7lo4t2/muq40i
title: msXV_007v_31_14.jpg
DOI: 10.15468/dl.qhaz6k
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sporobolus indicus",
 "Country is North Macedonia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035289-250717081556266/datasets/export for details.
DOI: 10.25346/s6/7lo4t2/upaky6
title: msXV_007v_31_13.jpg
DOI: 10.25346/s6/7lo4t2/ltvdyf
title: msXV_007v_15_12.jpg
DOI: 10.25346/s6/7lo4t2/nejmof
title: msXV_007v_15_11.jpg
DOI: 10.25346/s6/7lo4t2/dpmfbe
title: msXV_007v_15_10.jpg
DOI: 10.15468/dl.6e76qh
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Adamussium colbecki",
 "Year 2000-2025"
 ]
}

 The dataset includes 77 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035288-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25346/s6/7lo4t2/qzy2ho
title: msXV_007v_15_09.jpg
DOI: 10.25346/s6/7lo4t2/pmtjxj
title: msXV_007v_15_08.jpg
DOI: 10.25346/s6/7lo4t2/z4fnqz
title: msXV_007v_15_07.jpg
DOI: 10.25346/s6/7lo4t2/9yaevz
title: msXV_007v_15_06.jpg
DOI: 10.25346/s6/7lo4t2/zvrfd5
title: msXV_007v_15_05.jpg
DOI: 10.25346/s6/7lo4t2/ijpxtf
title: msXV_007v_15_04.jpg
DOI: 10.15468/dl.6vpp9b
title: Occurrence Download

description: A dataset containing 738 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Machaerium scleroxylon"
 ]
}

 The dataset includes 738 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035290-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17672476
title: Data sample for "Spatial-Spectral Deep Learning for Prostate Cancer Tissue Classification in Infrared Spectroscopy"

description: Sample data corresponding to Figure 6, Figure 8, and Supporting Figure S5 of the paper "Spatial-Spectral Deep Learning for Prostate Cancer Tissue Classification in Infrared Spectroscopy" in Analytical Chemistry: https://doi.org/10.1021/acs.analchem.5c04765

Included are four FTIR TMA cores of prostate tissue: s10_c048, s17_c015, s33_c059, s33_c070. Each core is provided with preprocessed spectra (no suffix), or as raw spectra (_raw suffix). Each core has an associated annotation file, tissue mask file, chemical image file generated as the area under the amide I band, and an aligned H&E image from a serial section. Wavenumbers corresponding to channels in the hyperspectral images are uploaded as vectors. Hyperspectral images are in hdf5 format, and can be loaded using e.g. h5py for Python.

Included also are model weights corresponding to each of the ten classifiers used in the paper. Implementations of these classifiers as well as usage examples can be found at https://github.com/lyyraaa/spatial-spectral-prostate.

Please direct any questions about the data or paper to: lyra.oleary@manchester.ac.uk
DOI: 10.5281/zenodo.17671292
title: Data sample for "Spatial-Spectral Deep Learning for Prostate Cancer Tissue Classification in Infrared Spectroscopy"

description: Sample data corresponding to Figure 6, Figure 8, and Supporting Figure S5 of the paper "Spatial-Spectral Deep Learning for Prostate Cancer Tissue Classification in Infrared Spectroscopy" in Analytical Chemistry: https://doi.org/10.1021/acs.analchem.5c04765

Included are four FTIR TMA cores of prostate tissue: s10_c048, s17_c015, s33_c059, s33_c070. Each core is provided with preprocessed spectra (no suffix), or as raw spectra (_raw suffix). Each core has an associated annotation file, tissue mask file, chemical image file generated as the area under the amide I band, and an aligned H&E image from a serial section. Wavenumbers corresponding to channels in the hyperspectral images are uploaded as vectors. Hyperspectral images are in hdf5 format, and can be loaded using e.g. h5py for Python.

Included also are model weights corresponding to each of the ten classifiers used in the paper. Implementations of these classifiers as well as usage examples can be found at https://github.com/lyyraaa/spatial-spectral-prostate.

Please direct any questions about the data or paper to: lyra.oleary@manchester.ac.uk
DOI: 10.15468/dl.fdt59y
title: Occurrence Download

description: A dataset containing 1063 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lithocarpus polystachyus",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 1063 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008487-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.znx33t
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Savannosiphon euryphylla",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 30 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008488-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31286149
title: Aneuploidy, polyploidy, and loss of heterozygosity distinguish serial bloodstream isolates of <i>Candida albicans</i>

description: Supplemental data for Aneuploidy, polyploidy, and loss of heterozygosity distinguish serial bloodstream isolates of <i>Candida albicans.</i> <i>Candida albicans</i> is an important opportunistic fungal pathogen with extensive genomic variation. We performed comparative genomic and phenotypic analysis of 101 <i>C. albicans</i> bloodstream isolates collected from 55 patients in the Twin Cities region of Minnesota, including serial isolates from 19 patients. We analyzed the phylogenetic relationships of these isolates relative to 199 globally-collected public <i>C. albicans</i> genomes. This study’s regional isolates span the phylogenetic diversity of <i>C. albicans</i>; 6 isolates represent novel outliers to known clades. While all serial isolates from the same patient clustered together phylogenetically, we observed extensive large-scale genomic variation between serial isolates including polyploidy, aneuploidy, copy number variation, loss of heterozygosity, and chromosomal rearrangements. We demonstrated how a heterozygous <i>ERG251</i> variant drives azole tolerance in a clinical isolate from a patient with a history of recurrent infections. Using serial isolates, we demonstrated that polyploidy provides an adaptive advantage in the presence of fluconazole despite the absence of overt antifungal drug resistance. Our analysis of closely matched serial isolates reveals the genomic plasticity of <i>C. albicans</i> during invasive infections and identifies variation driving antifungal drug tolerance.The Illumina whole genome sequencing data is deposited at the NCBI SRA, Bioproject ID PRJNA1068683.Supplemental Figure S1: Maximum-likelihood, midpoint-rooted phylogenetic tree with 101 new isolates (this study) and 199 publicly available genomesSupplemental Figure S2: LOH patterns distinguish unrelated strainsSupplemental Figure S3: Single allele ERG251 dysfunction does not have a significant fitness cost and complementation of WT ERG251 allele increases azole sensitivitySupplemental Figure S4: Evidence for reciprocal translocation between Chr2 and Chr6 in isolate 60Supplemental Figure S5: Uncropped karyotype gels and Southern blotsSupplemental Figure S6: Deletion of orf19.4069 (and dubious orf19.4070) in clinical isolates from multiple phylogenetic cladesSupplemental Table S1: Strain table with MIC, SMG, MLST, clade, genome heterozygositySupplemental Table S2: Publicly availabe genomes analyzed in this studySupplemental Table S3: Pearson's correlation of heterozygosity and phenotypesSupplemental Table S4: Aneuploid isolate FACS and estimated relative copy number by read depth analysisSupplemental Table S5: CNV size, breakpoints and associated repeat regionsSupplemental Table S6: Gene amplifications and deletionsSupplemental Table S7: Primers used for WT ERG251 transformationSupplemental Table S8: CFU counts for Figure 7Archive of analysis scripts: 2024_Candida_albicans_MEC_analysis_github_files