cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12315230.v4
title: Aspergillus fumigatus transcription factors involved in the caspofungin paradoxical effect, supplementary files

description: <i>Aspergillus fumigatus </i>is the leading cause of pulmonary fungal diseases. Azoles have been used for many years as the main antifungal agents to treat and prevent invasive aspergillosis. However, in the last ten years there are several reports of azole resistance in <i>A. fumigatus</i> and new strategies are needed to combat invasive aspergillosis. Caspofungin is effective against other human fungal pathogens, but it is only fungistatic against <i>A. fumigatus</i>. Resistance to caspofungin in <i>A. fumigatus</i> have been linked to mutations in the <i>fksA</i> gene that encodes the target enzyme of the drug, β-1,3-glucan synthase. However, tolerance to high caspofungin concentrations, a phenomenon known as caspofungin paradoxical effect (CPE), is also important for subsequent adaptation and drug resistance evolution. Here, we have identified and characterized the transcription factors involved in the response to CPE by screening an <i>A. fumigatus</i> library of 484 null transcription factors (TFs) in CPE drug concentrations. We have identified eleven TFs that had reduced CPE encoding proteins involved in the basal modulation of the RNA polymerase II initiation sites, calcium metabolism and cell wall remodelling. One of theseTFs FhdA was important for mitochondrial respiratory function and iron metabolism. The Δ<i>fhdA</i> mutant had decreased growth when exposed to Congo Red or at high temperature. RNAseq analysis and further experimental validation indicate that the Δ<i>fhdA</i> mutant showed diminished respiratory capacity, probably affecting several pathways related to the caspofungin tolerance and resistance. Our results provide the foundation to understand signaling pathways that are important for caspofungin tolerance and resistance.
DOI: 10.6084/m9.figshare.24895233.v3
title: Educator and Student Evaluation Data for <b>Integrating Canvas and GitLab to Enrich Learning Processes</b>

description: Evaluation data for Canvas-GitLab integration use cases presented in <b>Integrating Canvas and GitLab to Enrich Learning Processes.</b><i>Abstract of paper:</i>Version Control Systems (VCS) are increasingly being adopted for effective software education. However they are often used independently of general-purpose Learning Management Systems (LMS), leading to poor user experiences and data fragmentation. This paper presents a high level programming framework that enables integration of the Canvas LMS and the web based GitLab VCS. Eight use case software applications are implemented with it, motivated by related work, educator and student surveys we conducted, and our early experience of using GitLab for software education. The framework semi-automates feedback loops, improves the overall user experience for students and educators and reduces administrative time — saving educators up to 16.7 hours in a 12 week semester. The components of our framework are open source for learning technologists to develop their own use cases.The full paper is attached as Paper.pdf.
DOI: 10.6084/m9.figshare.7497848.v1
title: Supplementary Material for: Jagged1 is Clinically Prognostic and Promotes Invasion of Glioma-Initiating Cells by Activating NF-κB(p65) Signaling

description: <b><i>Background/Aims:</i></b> Jagged1 is the ligands of the Notch signaling and has been shown to promote glioma-initiating cells (GICs) in glioblastoma. The role of Jagged1 in GICs invasion and underlying molecular mechanisms remain unclear. <b><i>Methods:</i></b> Survival data from R2 genomics analysis, the Cancer Genome Atlas (TCGA), the Chinese Glioma Genome Atlas (CGGA) and visualization platform database were used to evaluate the effects of Jagged1 on overall patient survival. we investigated Jagged1 induced the GICs cells’ invasion by matrix degradation assays and Transwell cell invasion assays <i>in vitro</i>, then we further explored the underlying molecular mechanisms using Co-immunoprecipitation (co-IP) analysis. <b><i>Results:</i></b> High expression of Jagged1 in human glioma was associated with poor survival. Clinical data analysis showed that the Jagged1 was positively correlated with NF-κB(p65). Jagged1-induced invasion of GICs cells through activation of NF-κB(p65) pathway. <i>In vivo</i>, knockdown of Jagged1 could suppress the tumorigenicity of GICs cells through NF-κB(p65) signaling. <b><i>Conclusion:</i></b> Insights gained from these findings suggest that Jagged1 plays an important oncogenic role in GICs malignancy by activation of NF-κB(p65) signaling, and Jagged1 could be employed as an effective therapeutic target for GICs.
DOI: 10.6084/m9.figshare.156058.v3
title: Rising CO2 and human nutrition: Toward globally imbalanced plant stoichiometry?

description: Loladze, I. (2002) Rising CO2 and human nutrition: Toward globally imbalanced plant stoichiometry? Trends in Ecology and Evolution, 17, 457-461
DOI: 10.25403/upresearchdata.27231888.v1
title: Genomic characterisation of the South African Wagyu populations

description: Research was done on the genomic characterisation and diversity of the Wagyu cattle populations in South Africa. This was done to assist the Wagyu Society of South Africa to determine whether the Japanese Black and Akaushi Wagyu breeds can be treated as the same breed, or whether they should be treated as the seperate breeds that they are.
DOI: 10.6084/m9.figshare.17159045.v1
title: WDV

description: WDV is a dataset for the verbalisation of Wikidata triples. It is thoroughly described in the paper that accompanies it. It consists of a large partially annotated dataset of over 7.6k entries that align a broad collection of Wikidata claims with their respective verbalisations. The attributes seen in each entry consist of: attributes describing the claim, such as its Wikidata ID (claim id ) and its rank (normal, deprecated or preferred); attributes from the claim’s components (subject, predicate, and object), including their Wikidata IDs (e.g. subject id ), labels (e.g. subject label ), descriptions (e.g. subject desc), and aliases (e.g. subject alias); a JSON representation of the object alongside its type (object datatype) as defined by Wikidata; attributes from the claim’s theme such as its root class’ Wikidata ID (theme root class id) and label (theme label); the aligned verbalisation, before and after replacement of tokens unknown to the model (verbalisation unk replaced ); the sampling weight from the stratified sampling process; and the crowdsourced annotations and their aggregations, for those entries (∼1.4k) that are annotated. WDV is a 3 star dataset according to the 5 star deployment scheme for Linked Data. It is available on the web in a structured, machine-readable, and non-proprietary format. WDV is aimed at directly helping with managing reference quality in Wikidata by allowing us to close the gap in form between the data in the KG and the data in its sources. It has already made possible efforts towards automated fact verification in Wikidata.
DOI: 10.6084/m9.figshare.24637683.v1
title: 18 Oct to 25 Oct (fpqo format).zip

description: raw data for 18 Oct to 25 Oct period in fpqo format.
DOI: 10.6084/m9.figshare.5099467.v1
title: Mathematica File: Example Simulation Code (.nb) from Asymmetric competition impacts evolutionary rescue in a changing environment

description: This file contains example code to run a simulation, analyze the data from simulations, and find ESS trait values and population sizes.
DOI: 10.17632/xvfvk2zvhw
title: Dataset of "Consistency of pacing profile according to performance level in three different editions of the Chicago, London, and Tokyo marathons"

description: Dataset with the data of the manuscript "Consistency of pacing profile according to performance level in three different editions of the Chicago, London, and Tokyo marathons" published in Scientific Reports (DOI: 10.1038/s41598-022-14868-6). The dataset is after pre-processing data (removing outliers, calculate the variables of analysis, etc.).
DOI: 10.6084/m9.figshare.26405335.v2
title: Supplemental data file for: A Conceptual Framework for Data Harmonization in Mental Health Using the International Classification of Functioning Disability and Health (ICF): An Example with the R2D2-MH Consortium.

description: Supplemental data file for: "A Conceptual Framework for Data Harmonization in Mental Health Using the International Classification of Functioning Disability and Health (ICF): An Example with the R2D2-MH Consortium". Contains ICF linking for measures commonly used in mental health datasets.Minor correction made 05.02.2025
DOI: 10.6084/m9.figshare.27613470.v6
title: Supplementary Files associated with manuscript: "<b>Consistent microbial insights across sequencing methods in soil studies: The role of reference taxonomies"</b>

description: The datasets are supplementary files associated with the paper titled "<b>Consistent</b><b> microbial insights across sequencing methods in soil studies: The role of reference taxonomies"</b><b>The team that worked on this immense project gives you access to this data. As such, remember to cite the paper and this dataset whenever this data is reused.</b>
DOI: 10.17632/kcyn4nhv2c
title: Images and pixel annotations for corrosion segmentation

description: Corrosion images acquired in the field with diverse corrosion types and background characteristics of color and texture. 1024 images are avaiable in complete database. 
35 images were selected for pixel annotation, with five patches of 5x5 pxs for corrosion and for background for each image. Such images and annotations are also avaiable.
DOI: 10.6084/m9.figshare.9877367.v1
title: MOESM3 of Open-source QSAR models for pKa prediction using multiple machine learning approaches

description: Additional file 3.Â DataWarrior pKa data registered in DSSTox database.
DOI: 10.17632/y4zfwnsk3m
title: Tagalog kapitbahay concepts - Encoding in Marinduque (Southern Tagalog) dialect / The research setting

description: These are Supplementary Materials I and II (Supporting Information) for the research article “Kapit” at “Bahay” concepts of Filipino neighboring: A cultural revalidation," published in ETHOS by the American Anthropological Association through Wiley-Blackwell.

Original Article: 

Fatalla, Jimbo M. 2023. “Kapit” at “Bahay” concepts of Filipino neighboring: A cultural revalidation." Ethos 51 (2): 149–165. https://doi.org/10.1111/etho.12383
DOI: 10.17632/yhwnfhrfp9
title: In-situ versus ex-situ x-ray diffraction (XRD) study of the early hydration of Portland cements containing calcium carbonate

description: In Gonçalves et al. we compare the phase evolution during the hydration of two commercial Portland cements using x-ray diffraction (XRD). The cementitious pastes were characterized with different hydration ages (from 1 hour to 28 days) and the results of the in-situ technique were compared with the conventional ex-situ method. Complementary standardized thermogravimetry analysis (TGA) was performed, and the results related to the evolution of phases.
DOI: 10.6084/m9.figshare.10394711.v1
title: Bighorn sheep genomic dataset

description: High Density Ovine array genotypes for 511 bighorn sheep. Dataset was used to examine the genomic consequences of bighorn sheep translocations and population isolation, to enhance understanding of evolutionary processes that affect population genetics and inform future restoration strategies.<br>Animal capture and handling protocols were approved by Institutional Care and Use Committees at Montana State University (Permit # 2011-17, 2014-32), Montana Department of Fish, Wildlife, and Parks (Permit # 2016-005), Parks Canada (Permit # WL-2005-638), Wyoming Game and Fish Department (Permit # 854), U.S. Geological Survey (Permit # 2004-01, DINO-2008-SCI-0010), and University of Montana (Permit # 024-07MHWB-071807 and 012-16MMMCWRU-022916).<br>
DOI: 10.6084/m9.figshare.3457751.v3
title: Is voice a marker of ASD? A systematic review and meta-analysis

description: Dataset reporting the statistical estimates of acoustic patterns in ASD retrieved from a systematic review of the literature. <br>The data is used in an article published in Autism Research:Fusaroli, R., Lambrechts, A., Bang, D., Bowler, D., Gaigg, S. (in press) Is voice a marker of ASD? A systematic review and meta-analysis. Autism Research.<br>The data and statistical script are available also on:https://github.com/fusaroli/AcousticPatternsInASD
DOI: 10.6084/m9.figshare.14439809.v1
title: Code and datasets for project "To lead, or to follow?

description: Code and variables and datasets<br>
DOI: 10.6084/m9.figshare.27074827.v1
title: Robust estimation for number of factors in high dimensional factor modeling via Spearman correlation matrix

description: Determining the number of factors in high-dimensional factor modeling is essential but challenging, especially when the data are heavy-tailed. In this paper, we introduce a new estimator based on the spectral properties of Spearman sample correlation matrix under the high-dimensional setting, where both dimension and sample size tend to infinity proportionally. Our estimator is robust against heavy tails in either the common factors or idiosyncratic errors. The consistency of our estimator is established under mild conditions. Numerical experiments demonstrate the superiority of our estimator compared to existing methods.
DOI: 10.17632/xfyxx6tcwr
title: Estudio de caso para análisis en clase

description: A continuación se presenta la síntesis del estudio de caso de la empresa SIEMENS, el cual es un material de apoyo en el análisis desde los diferentes entornos organizacionales
DOI: 10.6084/m9.figshare.13238015.v1
title: Statements_Contestation_Russian Sanctions

description: The statements dataset for the paper "Contesting European Foreign, Security, and Defence Cooperation: Latent Coalitions in the Case of the EU’s Russian Sanctions"
DOI: 10.6084/m9.figshare.28684319.v1
title: Sample Brochure Project

description: This is a sample test document that will be used in Figshare.
DOI: 10.17632/zywr5b4c89
title: Tsunami deposits database - Tropical and other climatic zones

description: This is a geographic database from the paper: "Tsunami deposits in Tropical regions: A review."
The database contains information on the global distribution of historical and prehistorical tsunami deposits, categorized into two groups based on their location: the Tropical Zone and other climatic zones.
It includes geographical coordinates, bibliographic references, year of publication, location by region and country, geomorphic environments where tsunami deposits were found, and proxies used in identification.
The database consists of three formats: shapefile, kmz, and csv.
The database can grow in the future with contributions from all interested parties.
DOI: 10.6084/m9.figshare.24021240.v1
title: PRISMA 2020 abstract checklist migrant entrepreneurship support Europe SLR.docxMigrant entrepreneurship in Europe: a systematic literature reviewMigrant entrepreneurship in Europe: a systematic literature review

description: This systematic literature review (SLR) investigates migrant entrepreneurship in Europe, addressing their characteristics, encountered challenges, and policy support. The SLR uses a repeatable search protocol for sources published from 1970 to 2021, retrieved from Scopus and Web of Science databases. Inclusion criteria focused on migrant entrepreneurship support studies, excluding domestic migration and non-European contexts. The methods align the data with the research questions to reduce bias. The authors developed an analytical framework inspired by Bourdieu's forms of capital and created tables to synthesize the data. The SLR covers 91 peer-reviewed studies published from 1994 to 2021. The authors categorized challenges into financial, human, and social capital, alongside external factors. Challenges encompassed assimilation, language barriers, networking, funding constraints, and adapting to local business practices. Migrant entrepreneurs' stability hinged on factors such as duration of stay, language proficiency, prior entrepreneurial experience, and education. The authors identified support mechanisms to include local networks, financing, and mentoring. The SLR outlines a research agenda, emphasizing enhanced human and social capital, well-designed support programs, and bias mitigation. This review contributes to the academic literature on understanding and promoting migrant entrepreneurship in the European context and to implications for policymakers and practitioners.
DOI: 10.17632/m5s4ntv53w
title: Updates on Coding in Dermatology: Supplemental Material

description: Supplementary Material
DOI: 10.17632/wzdxk2b32f
title: Microplastic sampling images Tioman Malaysia 2023

description: Microplastic sampling images Tioman Malaysia 2023
DOI: 10.6084/m9.figshare.27255963.v1
title: MSPSS DATASET.xlsx

description: A study carried out to revalidate the MSPSS in a sample of Nigerian Undergraduates. Convergent validity was established with the DUKE-UNC Functional Social Support Questionnaire (DUNCFSSQ) and Divergent validity was established with the General Anxiety Disorder Scale (GAD-7).
DOI: 10.6084/m9.figshare.28504331.v1
title: <i>Cerebral signature for pain perception and its modulation in patients with endometriosis: a prospective multicenter trial</i>

description: Endometriosis is a debilitating chronic disease that affects 10% of women of reproductive age. Pain perception in these patients results from complex mechanisms of peripheral and central sensitization. This project explored the modulation of brain areas responsible for pain, with a particular focus on patients with adenomyosis, a condition frequently associated with endometriosis.Patient recruitment was challenging due to the heterogeneity of the population. Therefore, we focused on patients with uterine endometriosis (adenomyosis), minimizing biases and ensuring greater consistency in the results.Project Objectives:1. Evaluate differences in brain activation before and after treatments for endometriosis/adenomyosis (surgery, medical therapy, or follow-up).2. Identify predictive factors for surgical treatment (vs. follow-up/medical therapy).3. Explore longitudinal changes in pain perception at three time points (T1, T2, T3).
DOI: 10.6084/m9.figshare.5326894.v1
title: Polarized light use in the nocturnal bull ant, Myrmecia midas Data Repository

description: For a detailed description of the methods and results of this project please see:<br>Freas CA, Narendra A, Lemesle C, Cheng K. 2017 Polarized light use in the nocturnal bull ant, Myrmecia midas. R. Soc. open sci. 4: 170598. http://dx.doi.org/10.1098/rsos.170598
DOI: 10.6084/m9.figshare.19706446.v1
title: Data --- Hot & Cold Ions Density, 100% N+, Rairden

description: This is the set of simulation data including the energetic ion density and the associated charge-exchange byproduct cold protons density, for the 3-phase 72 hours idealized storm. The energetic heavy ion density is set to be 100% N+, under the Rairden 1986 neutral geocorona model.
DOI: 10.6084/m9.figshare.23254658.v1
title: Test data of combined heat and power system.

description: Two testing CHP systems include a small-scale CHP system with a 6 bus electric power network and an 8-node heat network CHP system, and a large-scale CHP system with a 69 node heat network and IEEE 118 bus power network. .
DOI: 10.6084/m9.figshare.24894486.v1
title: Lake_sediment_Q10.V1

description: Raw data for "Temperature sensitivity of organic carbon decomposition in lake sediments is mediated by chemodiversity". The dataset contains organic carbon decomposition rates and their sensitivity to temperature for 50 lake sediments. Analyses showed that decomposition rates were mainly influenced by sediment properties such as pH and carbon content, and were also positively correlated with molecular richness. Temperature sensitivity (<i>Q</i><sub><em>10</em></sub>) is mainly affected by organic carbon quality, and the more biogeochemically recalcitrant the organic matter, the greater the <i>Q</i><sub><em>10</em></sub> of sediment organic carbon decomposition, thus supporting the carbon-quality temperature hypothesis.
DOI: 10.6084/m9.figshare.26089356.v1
title: HiGTS_2021s1

description: HiGTS is a high temporal resolution global gridded dataset of human thermal stress metrics. Derived using climate variables from ERA5-Land and ERA5, the HiGTS consists of hourly gridded maps of Universal Thermal Climate Index (UTCI), Universal Thermal Stress (UTS), and daily Thermal Stress Duration (TSD) at 0.1° × 0.1° spatial resolution over the global land surface.HiGTS_2021s1 contains the data from January 1, 2021 to March 31, 2021.
DOI: 10.6084/m9.figshare.5756523.v1
title: Jean-Claude Bradley Double Plus Good Dataset - ONSMP029

description: 2706 highly curated double+ validated (range: 0.1-5 C) unique compounds (7413 total measurements from Jean-Claude Bradley's Open Melting Point Data filtered with compounds that had at least one chiral center, possessed cis/trans isomerism, were inorganic or a salt removed. ONSChallenge wiki reference - <strong>ONSMP029</strong>
DOI: 10.17632/c3tw84hys5
title: RSL Online Focus Group

description: El conjunto de datos que presentamos aporta los resultados de investigación del artículo "Focus Group online en la investigación social: revisión de la literatura e implementación en contextos de Aprendizaje-Servicio virtual". Este dataset incluye una selección de artículos de investigación producidos por la Revisión Sistemática de la Literatura, empleada como metodología principal del artículo, en formato RIS (Research Information Systems), acompañados de resúmenes ampliados de cada uno de ellos.

Además de los artículos y resúmenes, proporcionamos códigos y herramientas que permiten generar nubes de palabras y otros gráficos relacionados con el contenido de los artículos.
DOI: 10.6084/m9.figshare.21201208.v1
title: P.tabuliformis_V1.0.ncRNA.gff3

description: The ncRNA annotation of Chinese pine genome.
DOI: 10.6084/m9.figshare.3515333.v1
title: Appendix B. Computation of the functional diversity indices.

description: Computation of the functional diversity indices.
DOI: 10.6084/m9.figshare.13498710.v1
title: 基于多阶段集成学习模型的企业破产风险评估研究

description: 为了验证所提出的基于多阶段集成学习模型的企业破产风险评估模型的性能，本文一共使用了10个实验数据集进行验证。其中，9个数据集来自UC Irvine (UCI)机器学习存储库，它们分别是Australian，Japanese，German (Asuncion和Newman，2007)，Taiwan (Yeh和Lien，2009)和波兰破产企业数据集(Zięba等，2016)。波兰制造业企业破产风险数据集包含五个具有不同预测周期的独立数据集(即Polish 1，Polish 2，Polish 3，Polish 4和Polish 5)；1个数据集(Creator数据集)由中国电子政务服务提供商科创信息技术有限公司 于2019年发布，包含了35960家中国公司的产权，财务报表和基本公司信息。
DOI: 10.6084/m9.figshare.15377115.v2
title: Constrained 3D Inversion of Magnetic Data in Northern Xinjiang

description: The materials used in the research about " A Constrained Approach by Curie Point Depth Estimation for the 3-D Inversion of Regional Lithospheric Magnetic Anomaly Data in Spherical Coordinates and Its Application to the Northern Xinjiang, China". The lithospheric magnetic anomaly data, the Curie point depth (CPD), the 3-D susceptibility structure, and the vertically integrated susceptibility (VIS) of the study region are included. In addition, an open-source C++ code of this constrained 3D inversion approach is uploaded, and its latest upate would be submitted to a Github project 3D_Mag_Inv_Tess. <br>