cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4982981
title: Velociraptor hindlimb musculoskeletal model

description: This project consists of the SIMM model files for the IGM985/986 Velociraptor mongoliensis specimens (housed at AMNH at the time) used in the following book chapter:<br>Hutchinson, J.R., Miller, C.E., Fritsch, G., Hildebrandt, T. 2008. The anatomical foundation for multidisciplinary studies of animal limb function: examples from dinosaur and elephant limb imaging studies.In: Frey R., Endo, H. (eds.), Anatomical Imaging: Towards a New Morphology. Berlin: Springer-Verlag, pp. 23-38. <br>It includes these files:1) A "bones" folder with .ASC format polygonal meshes at low resolution, as described in the above paper.2) .jnt and .msl files ("veloc_J12b" and "veloc_M12b") that are used by proprietary SIMM software (version 7.0) to run the model; these can be opened as text files in typical text applications.3) A snapshot of the SIMM model (.tif image).4) A pdf of the chapter that described the model. (NOT covered by the CC-BY license but shared due to limited availability otherwise)<br>Note that the SIMM model has undergone very minor changes from the 2008 paper's model.<br>SIMM software is commercial and available at: http://www.musculographics.com/html/products/SIMM.html<br>The model can, in theory, be imported into the free, open source musculoskeletal modelling package OpenSim, but there may be file conversion issues. See http://opensim.stanford.edu/ for more information.<br>As John R. Hutchinson made this model he is listed as the sole author here on this data record.
DOI: 10.6084/m9.figshare.4982933
title: complete_IPV_analysis_dataset_only.dta

description: This is data set for women who attended HIV testing services at three community voluntary testing and counseling sites in Kenya. We conducted a secondary analysis to describe the effect of Intimate partner violence of HIV status disclosure by the women. Descriptive and analytic methods were used.
DOI: 10.6084/m9.figshare.4982930
title: Supplementary Material for: Fetal and Postnatal Head Circumference Growth: Synergetic Factors for Neurodevelopmental Outcome at 2 Years of Age for Preterm Infants

description: <i>Abstract:</i> Preterm infants present higher risk of non-optimal neurodevelopmental outcome. Fetal and postnatal growth, in particular head circumference (HC), is associated with neurodevelopmental outcome. <i>Objectives:</i> We aimed to calculate the relationship between HC at birth, HC delta Z-score (between birth and hospital discharge), and non-optimal neurodevelopmental outcome at 2 years of corrected age in preterm infants. <i>Methods:</i> Surviving infants born ≤34 weeks of gestation were included in the analysis. The relationship between the risk of being non-optimal at 2 years and both HC at birth and HC growth was assessed. The 2 Z-scores were considered first independently and then simultaneously to investigate their effect on the risk of non-optimality using a generalized additive model. <i>Results:</i> A total of 4,046 infants with both HC measures at birth and hospital discharge were included. Infants with small HC at birth (Z-score 2) while adjusting for gestational age, twin status, sex, and socioeconomic information. <i>Conclusions:</i> HC at birth and HC dZ-score between birth and hospital discharge are synergistically associated to neurodevelopmental outcome at 2 years of corrected age, in a population-based prospective cohort of preterm infants born ≤34 weeks of gestation.
DOI: 10.6084/m9.figshare.4982933.v1
title: complete_IPV_analysis_dataset_only.dta

description: This is data set for women who attended HIV testing services at three community voluntary testing and counseling sites in Kenya. We conducted a secondary analysis to describe the effect of Intimate partner violence of HIV status disclosure by the women. Descriptive and analytic methods were used.
DOI: 10.6084/m9.figshare.4982747
title: Tweets using the hashtag #australianvalues, 22-27 April 2017

description: On 20 April 2017 the Australian Government announced that the Australian citizenship test would be made harder, with an increased focus on 'Australian values'.<br>Suggestions as to what 'Australian values' might actually be soon started to be shared on Twitter using the hashtag #australianvalues.<br>This dataset contains 55,698 Twitter ids from tweets collected from 20 to 27 April 2017 that included the #australianvalues tag. They were collected and processed using Twarc.<br><b>Methodology</b><br>An initial Twarc 'search' was run on 20 April to collect existing tweets.<br>A Twarc 'filter' was started on 20 April to collect streaming tweets and ran until 27 April.<br>Another Twarc 'search' was run on 25 April, just in case.<br>The JSON files were combined, duplicate tweets were removed, and the results were sorted.<br>Twitter ids were then extracted from the tweets using Twarc's 'dehydrate' command.<br><b>Using this file</b><br>To retrieve the original tweets from this list of ids you can use Twarc's 'hydrate' command or Documenting the Now's Hydrator.<br><br>
DOI: 10.6084/m9.figshare.4982747.v1
title: Tweets using the hashtag #australianvalues, 22-27 April 2017

description: On 20 April 2017 the Australian Government announced that the Australian citizenship test would be made harder, with an increased focus on 'Australian values'.<br>Suggestions as to what 'Australian values' might actually be soon started to be shared on Twitter using the hashtag #australianvalues.<br>This dataset contains 55,698 Twitter ids from tweets collected from 20 to 27 April 2017 that included the #australianvalues tag. They were collected and processed using Twarc.<br><b>Methodology</b><br>An initial Twarc 'search' was run on 20 April to collect existing tweets.<br>A Twarc 'filter' was started on 20 April to collect streaming tweets and ran until 27 April.<br>Another Twarc 'search' was run on 25 April, just in case.<br>The JSON files were combined, duplicate tweets were removed, and the results were sorted.<br>Twitter ids were then extracted from the tweets using Twarc's 'dehydrate' command.<br><b>Using this file</b><br>To retrieve the original tweets from this list of ids you can use Twarc's 'hydrate' command or Documenting the Now's Hydrator.<br><br>
DOI: 10.6084/m9.figshare.4982693
title: Caching Data from What makes specialized food-caching mountain chickadees successful city slickers?

description: Raw data for caching, false caching and re-caching rates
DOI: 10.6084/m9.figshare.4982690
title: Repeated-trial Memory Data from What makes specialized food-caching mountain chickadees successful city slickers?

description: Raw data for the repeated-trial spatial memory acquisition experiment
DOI: 10.6084/m9.figshare.4982690.v1
title: Repeated-trial Memory Data from What makes specialized food-caching mountain chickadees successful city slickers?

description: Raw data for the repeated-trial spatial memory acquisition experiment
DOI: 10.6084/m9.figshare.4982684
title: Brain Morphology Data from What makes specialized food-caching mountain chickadees successful city slickers?

description: Raw data for brain analyses. Includes all data for Hippocampus and Telencephalon
DOI: 10.6084/m9.figshare.4982687
title: Exploration and Activity Data from What makes specialized food-caching mountain chickadees successful city slickers?

description: Raw data for the exploration experiment
DOI: 10.6084/m9.figshare.4982693.v1
title: Caching Data from What makes specialized food-caching mountain chickadees successful city slickers?

description: Raw data for caching, false caching and re-caching rates
DOI: 10.6084/m9.figshare.4982681
title: Neophobia Data from What makes specialized food-caching mountain chickadees successful city slickers?

description: Raw data for the neophobia experiment
DOI: 10.6084/m9.figshare.4982684.v1
title: Brain Morphology Data from What makes specialized food-caching mountain chickadees successful city slickers?

description: Raw data for brain analyses. Includes all data for Hippocampus and Telencephalon
DOI: 10.6084/m9.figshare.4982687.v1
title: Exploration and Activity Data from What makes specialized food-caching mountain chickadees successful city slickers?

description: Raw data for the exploration experiment
DOI: 10.6084/m9.figshare.4982681.v1
title: Neophobia Data from What makes specialized food-caching mountain chickadees successful city slickers?

description: Raw data for the neophobia experiment
DOI: 10.6084/m9.figshare.4982663
title: Velocity field data Trefftz-plane measurement in flapping flight from Multi-cored vortices support function of slotted wing tips of birds in gliding and flapping flight

description: Vector data of figure 1c in tab separated text format (y [mm], z [mm], v [m/s], w [m/s])
DOI: 10.6084/m9.figshare.4982669
title: Problem-solving Data from What makes specialized food-caching mountain chickadees successful city slickers?

description: Raw data for problem-solving experiment
DOI: 10.6084/m9.figshare.4982654
title: Velocity field data Trefftz-plane measurement in gliding flight from Multi-cored vortices support function of slotted wing tips of birds in gliding and flapping flight

description: Vector data of figure 1b in tab separated text format (y [mm], z [mm], v [m/s], w [m/s])
DOI: 10.6084/m9.figshare.4982669.v1
title: Problem-solving Data from What makes specialized food-caching mountain chickadees successful city slickers?

description: Raw data for problem-solving experiment
DOI: 10.6084/m9.figshare.4982654.v1
title: Velocity field data Trefftz-plane measurement in gliding flight from Multi-cored vortices support function of slotted wing tips of birds in gliding and flapping flight

description: Vector data of figure 1b in tab separated text format (y [mm], z [mm], v [m/s], w [m/s])
DOI: 10.6084/m9.figshare.4982627
title: Nonapeptide neuronal phenotypes in eight species of lamprologine cichlid fishes from Isotocin neuronal phenotypes differ among social systems in cichlid fishes

description: Body size, cell number and average cell size for isotocin and vasotocin producing neurons in the parvocellular, magnocellular and gigantocellular regions of the preoptic area in 4 species of cooperatively breeding cichlids and 4 independently breeding species.
DOI: 10.6084/m9.figshare.4982639
title: Velocity field data on-wing measurement in gliding flight from Multi-cored vortices support function of slotted wing tips of birds in gliding and flapping flight

description: Vector data of figure 1d in tab separated text format (x [mm], y [mm], u [m/s], v [m/s])
DOI: 10.6084/m9.figshare.12906401
title: Table S.5 The intervals of optimal overlap ratios resulting in pl=4 to 16 global film layers and the optimal film consumption for the bale wrapped with IntelliWrap methodem

description: <b>Table S.5 </b>The intervals of optimal overlap ratios resulting in pl=4 to 16 global film layers and the optimal film usage for the exemplary large cylindrical bale wrapped with IntelliWrap method; film width 0.5 m.
DOI: 10.6084/m9.figshare.4982627.v1
title: Nonapeptide neuronal phenotypes in eight species of lamprologine cichlid fishes from Isotocin neuronal phenotypes differ among social systems in cichlid fishes

description: Body size, cell number and average cell size for isotocin and vasotocin producing neurons in the parvocellular, magnocellular and gigantocellular regions of the preoptic area in 4 species of cooperatively breeding cichlids and 4 independently breeding species.
DOI: 10.6084/m9.figshare.4982639.v1
title: Velocity field data on-wing measurement in gliding flight from Multi-cored vortices support function of slotted wing tips of birds in gliding and flapping flight

description: Vector data of figure 1d in tab separated text format (x [mm], y [mm], u [m/s], v [m/s])
DOI: 10.6084/m9.figshare.4982618
title: One-trial Memory Data from What makes specialized food-caching mountain chickadees successful city slickers?

description: Raw data for the one-trial spatial memory acquisition experiment
DOI: 10.6084/m9.figshare.12906401.v1
title: Table S.5 The intervals of optimal overlap ratios resulting in pl=4 to 16 global film layers and the optimal film consumption for the bale wrapped with IntelliWrap methodem

description: <b>Table S.5 </b>The intervals of optimal overlap ratios resulting in pl=4 to 16 global film layers and the optimal film usage for the exemplary large cylindrical bale wrapped with IntelliWrap method; film width 0.5 m.
DOI: 10.6084/m9.figshare.4982567
title: Sequence-based species delineation and molecular phylogenetics of the transitional Nearctic–Neotropical grasshopper genus <i>Taeniopoda</i> (Orthoptera, Romaleidae)

description: <i>Taeniopoda</i> is a genus of grasshoppers currently represented by 12 species distributed from southern USA to Panama, with most of them occurring along the transitional Nearctic–Neotropical region in central and southern Mexico. Despite being a small group of conspicuous, colourful species, the systematics of <i>Taeniopoda</i> has been largely neglected, including its phylogenetic affinity with the morphologically similar, monotypic genus <i>Romalea</i>. Here, we assessed the species limits in 11 of the species of <i>Teniopoda</i> based on two mitochondrial (mt) markers (COI, cyt <i>b</i>). Phylogenetic relationships were reconstructed adding two nuclear gene markers (28S, H3). A relaxed molecular clock analysis was performed based on the mt markers. We detected nuclear mt paralogues (<i>numts</i>) and the probable introgression of <i>T. tamaulipensis</i> mtDNA in specimens of <i>T. eques</i> from central Mexico. Between six and 14 species of <i>Taeniopoda</i> were delimited by the sequence-based approaches performed (COI divergence with thresholds of 1 and 2%; General Mixed Yule-Coalescent (GMYC) model). The GMYC and 1% threshold analyses with COI were more congruent with the currently recognized morphology-based taxonomy with 10 and 11 putative species, respectively. Four of these species were regarded as ‘stable’, since they were supported by at least one of the molecular analyses and by diagnostic morphological features. The species-based phylogeny recovered <i>Taeniopoda</i> as paraphyletic with respect to the monotypic genus <i>Romalea</i>. Three morphologically and geographically congruent major clades were recovered, two with species having a considerably elevated pronotal crest and one with its members having it less elevated. The origin and subsequent diversification of <i>Taeniopoda</i> were estimated to occur from the mid and late Miocene to Pliocene, respectively. The current species diversity in <i>Taeniopoda</i> was estimated to occur during the Pleistocene, which was probably influenced by the climatic oscillations that occurred during this period and the uplift of mountain ranges in Central America.
DOI: 10.6084/m9.figshare.4982567.v1
title: Sequence-based species delineation and molecular phylogenetics of the transitional Nearctic–Neotropical grasshopper genus <i>Taeniopoda</i> (Orthoptera, Romaleidae)

description: <i>Taeniopoda</i> is a genus of grasshoppers currently represented by 12 species distributed from southern USA to Panama, with most of them occurring along the transitional Nearctic–Neotropical region in central and southern Mexico. Despite being a small group of conspicuous, colourful species, the systematics of <i>Taeniopoda</i> has been largely neglected, including its phylogenetic affinity with the morphologically similar, monotypic genus <i>Romalea</i>. Here, we assessed the species limits in 11 of the species of <i>Teniopoda</i> based on two mitochondrial (mt) markers (COI, cyt <i>b</i>). Phylogenetic relationships were reconstructed adding two nuclear gene markers (28S, H3). A relaxed molecular clock analysis was performed based on the mt markers. We detected nuclear mt paralogues (<i>numts</i>) and the probable introgression of <i>T. tamaulipensis</i> mtDNA in specimens of <i>T. eques</i> from central Mexico. Between six and 14 species of <i>Taeniopoda</i> were delimited by the sequence-based approaches performed (COI divergence with thresholds of 1 and 2%; General Mixed Yule-Coalescent (GMYC) model). The GMYC and 1% threshold analyses with COI were more congruent with the currently recognized morphology-based taxonomy with 10 and 11 putative species, respectively. Four of these species were regarded as ‘stable’, since they were supported by at least one of the molecular analyses and by diagnostic morphological features. The species-based phylogeny recovered <i>Taeniopoda</i> as paraphyletic with respect to the monotypic genus <i>Romalea</i>. Three morphologically and geographically congruent major clades were recovered, two with species having a considerably elevated pronotal crest and one with its members having it less elevated. The origin and subsequent diversification of <i>Taeniopoda</i> were estimated to occur from the mid and late Miocene to Pliocene, respectively. The current species diversity in <i>Taeniopoda</i> was estimated to occur during the Pleistocene, which was probably influenced by the climatic oscillations that occurred during this period and the uplift of mountain ranges in Central America.
DOI: 10.6084/m9.figshare.4982492
title: Tyrannosaurus SIMM musculoskeletal model

description: This folder consists of the SIMM model files for the MOR555 T. rex specimen (now at Smithsonian) used in the following paper:Hutchinson, J.R., Anderson, F.C., Blemker, S., Delp, S.L. 2005. Analysis of hindlimb muscle moment arms in Tyrannosaurus rex using a three-dimensional musculoskeletal computer model. Paleobiology 31:676-701. doi: 10.1666/04044.1<br>It includes these files:1) A "bones" folder with .ASC format polygonal meshes at low resolution, as described in the above paper. Additional left leg files were generated as well as the third toe.2) .jnt and .msl files ("trex J42" and "trex M42") that are used by proprietary SIMM software (version 7.0) to run the model; these can be opened as text files in typical text applications.3) A snapshot of the SIMM model.<br>Note that the SIMM model has undergone minor changes from the 2005 paper's model, but these are fairly trivial (except as noted above).<br>SIMM software is commercial and available at: http://www.musculographics.com/html/products/SIMM.htmlThe model can, in theory, be imported into the free, open source musculoskeletal modelling package OpenSim, but there may be file conversion issues. See http://opensim.stanford.edu/ for more information.
DOI: 10.6084/m9.figshare.4982408
title: Read-across of ready biodegradability based on the substrate specificity of <i>N</i>-alkyl polypropylene polyamine-degrading microorganisms

description: The biodegradation of <i>N</i>-alkyl polypropylene polyamines (NAPPs) was studied using pure and mixed cultures to enable read-across of ready biodegradability test results. Two <i>Pseudomonas</i> spp. were isolated from activated sludge with <i>N</i>-oleyl alkyl propylene diamine and <i>N</i>-coco alkyl dipropylene triamine, respectively. Both strains utilized all NAPPs tested as the sole source of carbon, nitrogen and energy for growth. Mineralization of NAPPs was independent of the alkyl chain length and the size of the polyamine moiety. NAPPs degraded in closed bottle tests (CBTs) using both river water and activated sludge. However, ready biodegradability of NAPPs with alkyl chain lengths of 16–18 carbon atoms and polyamine moieties with three and four nitrogen atoms could not be demonstrated. Biodegradation in the CBT was hampered by their limited bioavailability, making assessment of the true ready biodegradability of these highly adsorptive surfactants impossible. All NAPPs are therefore classified as readily biodegradable through read-across. Read-across is justified by the broad substrate specificity of NAPP-degrading microorganisms, their omnipresence and the mineralization of NAPPs.
DOI: 10.6084/m9.figshare.4982411
title: Spatial patterns of richness and abundance of benthic decapod crustaceans and fishes in the North-west Atlantic as measured by cobble-filled bio-collectors

description: Examination of spatial patterns of organisms in the rocky subtidal zone is logistically challenging, particularly over large geographic distances. In the present study, we describe patterns of richness and abundance of decapod crustaceans and small demersal fishes colonizing cobble-filled bio-collectors in 2008 and 2009 at nearshore sites across an important oceanographic and biogeographic gradient in the North-west Atlantic from Rhode Island, USA to Newfoundland, Canada. At least 17 decapod and 24 fish genera were caught, including cryptic fish taxa not readily sampled with other gear. Species richness and abundance of decapods and fishes in collectors at shallow sites (5–10 m) was similar among nearby sites and was greatest in the southernmost region, but did not follow a simple latitudinal cline. The lack of clear latitudinal patterns is likely to be a result of the complex geography of summer temperatures along this coast, with the lowest temperatures at the mouth of the Bay of Fundy, the centre of the study domain. In 2008, the abundance of crabs was positively related to temperature while that of shrimp was negatively related. There was also a significant interaction between depth and study area, with greater similarity among areas at greater depths (up to 76 m), and greater similarity among depths in areas with little temperature stratification. Our results indicate that bio-collectors are a powerful tool for sampling decapod crustaceans and small demersal fishes in nearshore rocky habitats. Given the anthropogenic impacts in coastal habitats, this information is likely to prove useful for detecting changes in rocky subtidal habitats.
DOI: 10.6084/m9.figshare.4982411.v1
title: Spatial patterns of richness and abundance of benthic decapod crustaceans and fishes in the North-west Atlantic as measured by cobble-filled bio-collectors

description: Examination of spatial patterns of organisms in the rocky subtidal zone is logistically challenging, particularly over large geographic distances. In the present study, we describe patterns of richness and abundance of decapod crustaceans and small demersal fishes colonizing cobble-filled bio-collectors in 2008 and 2009 at nearshore sites across an important oceanographic and biogeographic gradient in the North-west Atlantic from Rhode Island, USA to Newfoundland, Canada. At least 17 decapod and 24 fish genera were caught, including cryptic fish taxa not readily sampled with other gear. Species richness and abundance of decapods and fishes in collectors at shallow sites (5–10 m) was similar among nearby sites and was greatest in the southernmost region, but did not follow a simple latitudinal cline. The lack of clear latitudinal patterns is likely to be a result of the complex geography of summer temperatures along this coast, with the lowest temperatures at the mouth of the Bay of Fundy, the centre of the study domain. In 2008, the abundance of crabs was positively related to temperature while that of shrimp was negatively related. There was also a significant interaction between depth and study area, with greater similarity among areas at greater depths (up to 76 m), and greater similarity among depths in areas with little temperature stratification. Our results indicate that bio-collectors are a powerful tool for sampling decapod crustaceans and small demersal fishes in nearshore rocky habitats. Given the anthropogenic impacts in coastal habitats, this information is likely to prove useful for detecting changes in rocky subtidal habitats.