cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/n34ad7
title: Review of the genus Chasmogenus Sharp, 1882 of northeastern South America with an emphasis on Venezuela, Suriname, and Guyana (Coleoptera, Hydrophilidae, Acidocerinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Smith, Rachel R., Short, Andrew Edward Z. (2020): Review of the genus Chasmogenus Sharp, 1882 of northeastern South America with an emphasis on Venezuela, Suriname, and Guyana (Coleoptera, Hydrophilidae, Acidocerinae). ZooKeys 934: 25-79, DOI: http://dx.doi.org/10.3897/zookeys.934.49359, URL: http://dx.doi.org/10.3897/zookeys.934.49359
DOI: 10.15468/q692u2
title: The fouling serpulids (Polychaeta: Serpulidae) from United States coastal waters: an overview

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bastida-Zavala, J. Rolando, McCANN, Linda D., Keppel, Erica, Ruiz, Gregory M. (2017): The fouling serpulids (Polychaeta: Serpulidae) from United States coastal waters: an overview. European Journal of Taxonomy 344: 1-76, DOI: https://doi.org/10.5852/ejt.2017.344
DOI: 10.17632/72658ppfnj.1
title: The Efficiency And Safety Of Oxygen-Supplemented Accelerated Transepithelial Corneal Crosslinking

description: Comparison of clinical outcomes between oxygen-enriched and room-air conditions SPSS Dataset
DOI: 10.14457/mu.res.2014.48
title: Study of genetic factors as risk of developing Parkinson’s disease
DOI: 10.14457/mu.res.2014.49
title: Human host cellular protein system interacting with the dengue virus NS1 protein
DOI: 10.15468/c8e4hs
title: New sibling species and new occurrences of squat lobsters (Crustacea, Decapoda) from the western Indian Ocean

description: This dataset contains the digitized treatments in Plazi based on the original journal article Macpherson, Enrique, Rodríguez-Flores, Paula C., Machordom, Annie (2017): New sibling species and new occurrences of squat lobsters (Crustacea, Decapoda) from the western Indian Ocean. European Journal of Taxonomy 343: 1-61, DOI: https://doi.org/10.5852/ejt.2017.343
DOI: 10.17632/8wt3wh2mwr.1
title: Data for: Nutrient limitation of phytoplankton in Chesapeake Bay: Development of an empirical approach for water-quality management
DOI: 10.25934/00005106.0
title: Available IPD datapackage for study 'A Multicenter, Double-blind, Randomized, Parallel Group, Positive-controlled Trial Comparing the Efficacy and Safety of Levetiracetam (1000 to 3000 mg/Day Oral b.i.d.) to Carbamazepine (400 to 1200 mg/Day Oral b.i.d.), Used as Monotherapy for up to a Maximum of 121 Weeks in Subjects (≥ 16 Years) Newly or Recently Diagnosed as Suffering From Epilepsy, and Experiencing Partial or Generalized Tonic-clonic Seizures'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00005106.1
title: IPD datapackage for study 'A Multicenter, Double-blind, Randomized, Parallel Group, Positive-controlled Trial Comparing the Efficacy and Safety of Levetiracetam (1000 to 3000 mg/Day Oral b.i.d.) to Carbamazepine (400 to 1200 mg/Day Oral b.i.d.), Used as Monotherapy for up to a Maximum of 121 Weeks in Subjects (≥ 16 Years) Newly or Recently Diagnosed as Suffering From Epilepsy, and Experiencing Partial or Generalized Tonic-clonic Seizures' and research request: 'Modelling seizure rates within clinical trials of antiepileptic drugs - Bonnett'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00005330
title: Modelling seizure rates within clinical trials of antiepileptic drugs - Bonnett

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.5281/zenodo.3834608
title: HeLa cell images with four labels (nuclear envelope, nucleus, rest of the cell, and background) for deep learning architecture training.

description: This is a data set that contains <strong>labeled HeLa cell images</strong>, generated in MATLAB® Image Labeler, indicating the four different classes - nuclear envelope, nucleus, rest of the cell, and background for <strong>deep learning</strong> architecture training. Details of the imaging and preparation have been published in: Cefa Karabağ, Martin L. Jones, Christopher J. Peddie, Anne E. Weston, Lucy M. Collinson, Constantino Carlos Reyes-Aldasoro. Segmentation and Modelling of the Nuclear Envelope of HeLa Cells Imaged with Serial Block Face Scanning Electron Microscopy. <em>J. Imaging</em> 2019, <em>5</em>(9), 75; https://doi.org/10.3390/jimaging5090075 and The data sets are freely available through EMPIAR: http://dx.doi.org/10.6019/EMPIAR-10094 EMPIAR. Details on the segmentation and analysis of HeLa cells have been published in: Cefa Karabağ, Martin L. Jones, Christopher J. Peddie, Anne E. Weston, Lucy M. Collinson, Constantino Carlos Reyes-Aldasoro. Semantic Segmentation of HeLa Cells: An Objective Comparison between one Traditional Algorithm and Three Deep-Learning Architectures, BioRxiv, https://doi.org/10.1101/2020.03.05.978478 and Cefa Karabağ, Martin L. Jones, Christopher J. Peddie, Anne E. Weston, Lucy M. Collinson, Constantino Carlos Reyes-Aldasoro. Segmentation and Modelling of the Nuclear Envelope of HeLa Cells Imaged with Serial Block Face Scanning Electron Microscopy. <em>J. Imaging</em> 2019, <em>5</em>(9), 75; https://doi.org/10.3390/jimaging5090075
DOI: 10.5281/zenodo.3834609
title: HeLa cell images with four labels (nuclear envelope, nucleus, rest of the cell, and background) for deep learning architecture training.

description: This is a data set that contains <strong>labeled HeLa cell images</strong>, generated in MATLAB® Image Labeler, indicating the four different classes - nuclear envelope, nucleus, rest of the cell, and background for <strong>deep learning</strong> architecture training. Details of the imaging and preparation have been published in: Cefa Karabağ, Martin L. Jones, Christopher J. Peddie, Anne E. Weston, Lucy M. Collinson, Constantino Carlos Reyes-Aldasoro. Segmentation and Modelling of the Nuclear Envelope of HeLa Cells Imaged with Serial Block Face Scanning Electron Microscopy. <em>J. Imaging</em> 2019, <em>5</em>(9), 75; https://doi.org/10.3390/jimaging5090075 and The data sets are freely available through EMPIAR: http://dx.doi.org/10.6019/EMPIAR-10094 EMPIAR. Details on the segmentation and analysis of HeLa cells have been published in: Cefa Karabağ, Martin L. Jones, Christopher J. Peddie, Anne E. Weston, Lucy M. Collinson, Constantino Carlos Reyes-Aldasoro. Semantic Segmentation of HeLa Cells: An Objective Comparison between one Traditional Algorithm and Three Deep-Learning Architectures, BioRxiv, https://doi.org/10.1101/2020.03.05.978478 and Cefa Karabağ, Martin L. Jones, Christopher J. Peddie, Anne E. Weston, Lucy M. Collinson, Constantino Carlos Reyes-Aldasoro. Segmentation and Modelling of the Nuclear Envelope of HeLa Cells Imaged with Serial Block Face Scanning Electron Microscopy. <em>J. Imaging</em> 2019, <em>5</em>(9), 75; https://doi.org/10.3390/jimaging5090075
DOI: 10.14457/mu.res.2003.37
title: Microbial molecular biology
DOI: 10.14457/mu.res.2004.39
title: Male germ cell maturation and chromatin condensation of the asian bandicoot rat (Bandicota Indica)
DOI: 10.14457/mu.res.2005.44
title: Role of NK cells in cytokine and chemokines production in HIV seronegative and soropossessive subjects
DOI: 10.14457/mu.res.2016.29
title: Lignocellulosic biomass valorization: lignin fractionation of sugarcane bagasse for lignin-based polyurethane production
DOI: 10.14457/mu.res.2017.40
title: Analysis of aspects of the hepcidin-ferroportin axis in β-thalassemia/Hb E disease
DOI: 10.14457/mu.res.2017.41
title: Dissecting the cell entry and trafficking pathways of yellow head virus infection in shrimp
DOI: 10.25345/c5q99j
title: MassIVE MSV000085447 - Mitovesicles are mitochondria derived extracellular vesicles altered by aging and disease
title: Mitochondrial dysfunction is an established hallmark of aging and neural degenerative disorders such as Down syndrome and Alzheimer disease. Employing a high resolution density gradient on extracellular vesicles isolated from murine and human Down syndrome and diploid control brains, we identify and characterize a formerly unknown population of extracellular vesicles containing multiple mitochondrial markers that are distinct from the previously described EVs subtypes, microvesicles and exosomes. We term these mitochondria-derived EVs mitovesicles. We show that brain mitovesicle levels and cargo are tightly regulated under normal conditions and are altered during pathophysiological processes in which mitochondrial dysfunction occurs, suggesting that mitovesicles are a previously unrecognized player in mitochondria quality control and may have an active role in the intercellular tissue response to oxidative stress.
DOI: 10.5281/zenodo.3833916
title: Constraining properties of the next nearby core-collapse supernova with multi-messenger signals: multi-messenger signals

description: 1D FLASH simulations with STIR, for alpha_lambda = 1.23, 1.25, and 1.27. Run with SFHo EOS, M1 with 12 energy groups. For more information on these simulations, see Warren, Couch, O'Connor, & Morozova (arXiv:1912.03328) and Couch, Warren, & O'Connor (2020). Includes the multi-messenger data from the STIR simulations. The filename indicates the turbulent mixing parameter a and progenitor mass m of the simulation. Columns are time [s], shock radius [cm], explosion energy [ergs], electron neutrino mean energy [MeV], electron neutrino rms energy [MeV], electron neutrino luminosity [10^51 ergs/s], electron antineutrino mean energy [MeV], electron antineutrino rms energy [MeV], electron antineutrino luminosity [10^51 ergs/s], x neutrino mean energy [MeV], x neutrino rms energy [MeV], x neutrino luminosity [10^51 ergs/s], gravitational wave frequency from eigenmode analysis of the protoneutron star structure [Hz]. Note that the x neutrino luminosity is for <strong>one</strong> neutrino flavor - to get the total mu/tau neutrino and antineutrino luminosities requires multiplying this number by 4. v1.1 - removed unnecessary duplicate files
description: This work was funded by the NSF under award number AST-1801844, the US Department of Energy, Office of Science, Office of Nuclear Physics, under award numbers DE-SC0015904 and DE-SC0017955, and the Swedish Research Council under award number 2018-04575. This work was done using computational resources provided by the Michigan State University Institute for Cyber-Enabled Research.
description: {"references": ["Warren, Couch, O'Connor, & Morozova. \"Constraining properties of the next nearby core-collapse supernova with multi-messenger signals.\" Submitted to Ap.J. arXiv:1912.03328", "Couch, Warren, & O'Connor. \"Simulating turbulence-aided neutrino-driven core-collapse supernova explosions in one dimension.\" Ap.J. 890:2 (2020). arXiv:1902.01340"]}
DOI: 10.5281/zenodo.3834618
title: Linked COVID-19 Data: Johns Hopkins University (JHU) and European Centre for Disease Prevention and Control (ECDC)

description: Linked COVID-19 Data derived from <strong>Johns Hopkins University</strong> and <strong>European Centre for Disease Prevention and Control</strong> using the COVID-19 Ontology 10.5281/zenodo.3757828 developed for the Linked COVID-19 Data Dashboard: http://covid19data.link This files include data for covid19_jhu.ttl - COVID-19 data collected by the JHU covid19_ecdc.ttl - COVID-19 data collected by the ECDC This RDF files are based on https://pomber.github.io/covid19/timeseries.json https://opendata.ecdc.europa.eu/covid19/casedistribution/json/
DOI: 10.14457/mu.res.2005.45
title: Molecular and physiological characterization of Family of organic peroxide sensor and transcription regulators and how the system response to changes in the environment
DOI: 10.14457/mu.res.2007.69
title: Program: Directed exploratory research in basic synthetic organic chemistry and bioactive natural products (program for promoting collaborative research network)
DOI: 10.14457/mu.res.2011.52
title: Paa fasciculispina population genetic study project for endemic animals in Khao Soi Dao Chanthaburi Province
DOI: 10.14457/mu.res.2011.53
title: Study of Cyclin D1-CDK4 kinase activity in DNA damage response
DOI: 10.14457/mu.res.2015.71
title: Effects of antioxidant and physical activity on changes in myocardial activation after female sex hormone deprivation
DOI: 10.14457/mu.res.2015.72
title: Development and application of analytical method for investigation of particle size distribution of nanoparticles in food samples to gain an Insight into their bioavailability and toxicity
DOI: 10.15468/h835hq
title: New faunistic records of the family Mycetophilidae (Insecta, Diptera) from Morocco

description: This dataset contains the digitized treatments in Plazi based on the original journal article Banamar, Ouarda, Chandler, Peter J., Driauach, Ouafaa, Belqat, Boutaina (2020): New faunistic records of the family Mycetophilidae (Insecta, Diptera) from Morocco. ZooKeys 934: 93-110, DOI: http://dx.doi.org/10.3897/zookeys.934.49157, URL: http://dx.doi.org/10.3897/zookeys.934.49157
DOI: 10.5281/zenodo.3833791
title: Mass spectrometry output SILAC labelled (F/Y) biological replicate 2 - anti-HLA-ABC antibody W6/32

description: Mass spectrometry output from SILAC labelled (F/Y) ERAP2 WT versus (CRISPR Cas9-mediated) ERAP2-KO lymphoblastoid cell line from a Birdshot Uveitis patient (ERAP1 hap10/10 ERAP2 hapA/A). Peptides were eluted from immuno-purifications from HLA-A29-negative (DK1G8-negatively selected) fractions with anti-HLA-ABC antibody W6/32. The dataset was used for subsequent filtering and differential expression analysis by <em>limma</em>.
DOI: 10.5281/zenodo.3834620
title: IO Islamic 1134. Ta'rîkh-i- Ṭabarî, Chronicle of Ṭabaristân

description: IO Islamic 1134. Ta’rîkh-i- Ṭabarî, Chronicle of Ṭabaristân
DOI: 10.5281/zenodo.3834621
title: IO Islamic 1134. Ta'rîkh-i- Ṭabarî, Chronicle of Ṭabaristân

description: IO Islamic 1134. Ta’rîkh-i- Ṭabarî, Chronicle of Ṭabaristân
DOI: 10.14457/mu.res.2005.46
title: The adaptation of fertility behavior among immigrant from Myanmar in Thailand
DOI: 10.14457/mu.res.2012.57
title: Role of cyclin D1 in homologous recombination (HR) DNA repair
DOI: 10.14457/mu.res.2014.50
title: Production of human single chain variable fragment antibody (HuScFv) specific to NS1 protein of dengue virus
DOI: 10.14457/mu.res.2015.73
title: โครงการ ฤทธิ์ต้านอนุมูลอิสระของสาร phytochemical phenolics ต่อการยับยั้งรังสีอัลตร้าไวโอเลตในการกระตุ้นการเกิดเม็ดสีและ matrix metalloproteinase-1 ในเซลล์ผิวหนัง
DOI: 10.14457/mu.res.2016.30
title: Roles of von-canonical notch signaling in regulating cell survival and apoptosis in breast cancer cells through a wnt-β-catenin-dependent pathway
DOI: 10.14457/mu.res.2018.34
title: Molecular mechanism controlling expression of genes that are involved in vitellogenesis in Penaeus monodon
DOI: 10.18112/openneuro.ds002813.v1.0.0
title: Model-based fMRI reveals co-existing specific and generalized concept representations
DOI: 10.5281/zenodo.3833790
title: Mass spectrometry output SILAC labelled (F/Y) biological replicate 2 - anti-HLA-ABC antibody W6/32

description: Mass spectrometry output from SILAC labelled (F/Y) ERAP2 WT versus (CRISPR Cas9-mediated) ERAP2-KO lymphoblastoid cell line from a Birdshot Uveitis patient (ERAP1 hap10/10 ERAP2 hapA/A). Peptides were eluted from immuno-purifications from HLA-A29-negative (DK1G8-negatively selected) fractions with anti-HLA-ABC antibody W6/32. The dataset was used for subsequent filtering and differential expression analysis by <em>limma</em>.
DOI: 10.14457/mu.res.2003.38
title: Air pollution and lung cancer: A case study of Bangkok resident
DOI: 10.14457/mu.res.2010.113
title: Genetics and molecular biology of diseases relevant to thais
DOI: 10.14457/mu.res.2012.58
title: Research on the effect of cell membranes on growth and or integration of calcium oxalate crystal
DOI: 10.14457/mu.res.2013.71
title: Expression of mRNA and protein of NPY receptors, Y1, Y2, Y5 in subcutaneous and visceral fat tissues in lean, normal, and obese human and their correlations to peripheral metabolic factors
DOI: 10.14457/mu.res.2016.31
title: Heterodimeric ligand: potential multidrug-resistant staphylococcus aureus therapeutics
DOI: 10.5281/zenodo.3834619
title: Linked COVID-19 Data: Robert Koch-Institut (RKI)

description: Linked COVID-19 Data derived from <strong>Robert Koch Institute</strong> using the COVID-19 Ontology 10.5281/zenodo.3757828 developed for the Linked COVID-19 Data Dashboard: http://covid19data.link This files include data for covid19_rki*.ttl - single COVID-19 cases per day, collected by the RKI https://www.arcgis.com/home/item.html?id=dd4580c810204019a7b8eb3e0b329dd6 "confirmed" is calcaulated by the column "Refdatum" covid19_rki_ger.ttl - COVID-19 cases per day for Germany, collected by the RKI covid19_rki_ger_cum.ttl - COVID-19 cases accumulated per day for Germany, collected by the RKI covid19_rki_fs.ttl - COVID-19 cases per day for the federal states in Germany, collected by the RKI covid19_rki_fs_cum.ttl - COVID-19 cases accumulated per day for the federal states in Germany, collected by the RKI This RDF files are based on the NPGEO Corona Hub 2020 https://opendata.arcgis.com/datasets/dd4580c810204019a7b8eb3e0b329dd6_0.geojson https://npgeo-corona-npgeo-de.hub.arcgis.com/datasets/dd4580c810204019a7b8eb3e0b329dd6_0/data
DOI: 10.5281/zenodo.3834819
title: Supplementary Material for the paper: Automatic Document Screening of Medical Literature Using Word and Text Embeddings in an Active Learning Setting

description: This is the dataset used in the paper: Automatic Document Screening of Medical Literature Using Word and Text Embeddings in an Active Learning Setting. It is composed of: - Pre-trained models using active learning for document screening on HealthCLEF and Epistemonikos datasets. - Epistemonikos and HealthCLEF datasets containing medical questions and relevant/non relevant articles. - Embeddings and Document Representations used for experiments on both datasets. Scripts to run experiments can be found at: https://github.com/afcarvallo/active_learning_document_screening <strong>Paper abstract:</strong> Document screening is a fundamental task within Evidence-based Medicine (EBM), a practice that provides scientific evidence to support medical decisions. Several approaches have tried to reduce physicians' workload of screening and labeling vast amounts of documents to answer clinical questions. Previous works tried to semi-automate document screening, reporting promising results, but their evaluation was conducted on small datasets, which hinders generalization. Moreover, recent works in natural language processing have introduced neural language models, but none have compared their performance in EBM. In this paper, we evaluate the impact of several document representations such as TF-IDF along with neural language models (BioBERT, BERT, Word2vec, and GloVe) on an active learning-based setting for document screening in EBM. Our goal is to reduce the number of documents that physicians need to label to answer clinical questions. We evaluate these methods using both a small challenging dataset (HealthCLEF 2017) as well as a larger one but easier to rank (Epistemonikos). Our results indicate that word as well as textual neural embeddings always outperform the traditional TF-IDF representation. When comparing among neural and textual embeddings, in the HealthCLEF dataset the models BERT and BioBERT yielded the best results. On the larger dataset, Epistemonikos, Word2Vec and BERT were the most competitive, showing that BERT was the most consistent model across different corpuses. In term of active learning, an uncertainty sampling strategy combined with logistic regression achieved the best performance overall, above other methods under evaluation, and in fewer iterations.
DOI: 10.14457/mu.res.1997.9
title: Research for standard pitch and scale of Thai music
DOI: 10.14457/mu.res.2004.40
title: Cytokine gene polymorphisms and severity of malaria
DOI: 10.14457/mu.res.2004.41
title: Preparation and development of highly purified Hevea rubber
DOI: 10.14457/mu.res.2004.42
title: Biosynthesis of natural polyisoprenes-Initiation and termination steps of rubber formation
DOI: 10.14457/mu.res.2013.72
title: Characterization of membrane proteome in various hemocytic cell types of penaeus monodon during yellow head virus infection
DOI: 10.14457/mu.res.2018.35
title: Development and Application of Consequential Life Cycle Assessment Method for Food and Fuel in Thailand and Asia
DOI: 10.11571/upei-roblib-data/researchdata:625
title: Spatial multiplexing
DOI: 10.26300/3t7f-k331
title: Primary Care Relevant Interventions for Tobacco and Nicotine Use Prevention and Cessation in Children and Adolescents: A Systematic Review for the U.S. Preventive Services Task Force
DOI: 10.5255/ukda-sn-853812
title: Urban transformation in South Africa through co-designing energy services provision pathways 2016-2019
DOI: 10.15468/zgjuh8
title: Taxonomic revision of the Boiga ceylonensis group (Serpentes: Colubridae): reexamination of type specimens, redefinition of nominate taxa and an updated key

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ganesh, S. R., Achyuthan, N. S., Chandramouli, S. R., Vogel, Gernot (2020): Taxonomic revision of the Boiga ceylonensis group (Serpentes: Colubridae): reexamination of type specimens, redefinition of nominate taxa and an updated key. Zootaxa 4779 (3): 301-332, DOI: https://doi.org/10.11646/zootaxa.4779.3.1
DOI: 10.26300/9rxg-2b21
title: Pharmacologic and Nonpharmacologic Treatments for Posttraumatic Stress Disorder: Groundwork for a Publicly Available Repository of Randomized Controlled Trial Data
DOI: 10.5281/zenodo.3834622
title: Time series of snow cover area products over the Kananaskis Country

description: This dataset contains maps of the snow cover area over the Kananaskis Country (Canada) from 01 September 2017 to 31 August 2018. The products were derived from Sentinel-2 observations. All available Sentinel-2 level 1C products were processed to level 2A (surface reflectance and cloud mask) using the MAJA software. Then, level 2A products were processed using the LIS software to generate the snow cover maps. The area is covered by four tiles: T11UPT (81 dates), T11UPS (116 dates), T11UNT (114 dates), T11UNS (87 dates). The data are provided as GeoTIFF images coded as follows: 0: No-snow 100: Snow 205: Cloud including cloud shadow 255: No data Read more about these products in this blog post.