cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6503735
title: pGVG: a new Gateway-compatible vector for transformation of sugarcane and other monocot crops

description: Abstract The successful development of genetically engineered monocots using Agrobacterium-mediated transformation has created an increasing demand for compatible vectors. We have developed a new expression vector, pGVG, for efficient transformation and expression of different constructs for gene overexpression and silencing in sugarcane. The pCAMBIA2300 binary vector was modified by adding Gateway recombination sites for fast gene transfer between vectors and the maize polyubiquitin promoter Ubi-1 (ZmUbi1), which is known to drive high gene expression levels in monocots. Transformation efficiency using the pGVG vector reached up to 14 transgenic events per gram of transformed callus. Transgenic plants expressing the β-glucuronidase (GUS) reporter gene from pGVG showed high levels of GUS activity. qRT-PCR evaluations demonstrated success for both overexpression and hairpin-based silencing cassettes. Therefore, pGVG is suitable for plant transformation and subsequent applications for high-throughput production of stable transgenic sugarcane. The use of an expression cassette based on the ZmUbi1 promoter opens the possibility of using pGVG in other monocot species.
DOI: 10.6084/m9.figshare.6503735.v1
title: pGVG: a new Gateway-compatible vector for transformation of sugarcane and other monocot crops

description: Abstract The successful development of genetically engineered monocots using Agrobacterium-mediated transformation has created an increasing demand for compatible vectors. We have developed a new expression vector, pGVG, for efficient transformation and expression of different constructs for gene overexpression and silencing in sugarcane. The pCAMBIA2300 binary vector was modified by adding Gateway recombination sites for fast gene transfer between vectors and the maize polyubiquitin promoter Ubi-1 (ZmUbi1), which is known to drive high gene expression levels in monocots. Transformation efficiency using the pGVG vector reached up to 14 transgenic events per gram of transformed callus. Transgenic plants expressing the β-glucuronidase (GUS) reporter gene from pGVG showed high levels of GUS activity. qRT-PCR evaluations demonstrated success for both overexpression and hairpin-based silencing cassettes. Therefore, pGVG is suitable for plant transformation and subsequent applications for high-throughput production of stable transgenic sugarcane. The use of an expression cassette based on the ZmUbi1 promoter opens the possibility of using pGVG in other monocot species.
DOI: 10.6084/m9.figshare.6503729
title: Hymenoptera stings in Brazil: a neglected health threat in Amazonas State

description: Abstract INTRODUCTION: Hymenoptera injuries are commonly caused by stinging insects. In Amazonas state, Brazil, there is no information regarding distribution, profile, and systemic manifestations associated with Hymenoptera injuries. METHODS: This study aimed to identify risk factors for systemic manifestation using the Brazilian Notifiable Diseases Surveillance System (2007 to 2015). RESULTS: Half of Hymenoptera injuries were caused by bee stings. Hymenoptera injuries were concentrated in Manaus, and 13.36% of cases displayed systemic signs. Delayed medical assistance (4 to 12 hours) presented four times more risk for systemic manifestations. CONCLUSIONS: Simple clinical observations and history of injury are critical information for prognostic improvement.
DOI: 10.6084/m9.figshare.6503729.v1
title: Hymenoptera stings in Brazil: a neglected health threat in Amazonas State

description: Abstract INTRODUCTION: Hymenoptera injuries are commonly caused by stinging insects. In Amazonas state, Brazil, there is no information regarding distribution, profile, and systemic manifestations associated with Hymenoptera injuries. METHODS: This study aimed to identify risk factors for systemic manifestation using the Brazilian Notifiable Diseases Surveillance System (2007 to 2015). RESULTS: Half of Hymenoptera injuries were caused by bee stings. Hymenoptera injuries were concentrated in Manaus, and 13.36% of cases displayed systemic signs. Delayed medical assistance (4 to 12 hours) presented four times more risk for systemic manifestations. CONCLUSIONS: Simple clinical observations and history of injury are critical information for prognostic improvement.
DOI: 10.6084/m9.figshare.6503723
title: IS FUNCTIONAL OUTCOME BETTER AFTER ARTHROPLASTY FOR TROCHANTERIC FRACTURES IN OLDER ADULTS?

description: ABSTRACT Objectives: This article evaluated functional recovery and mortality after surgery to repair trochanteric fracture with regard to treatment technique through one year of follow-up. Method: Eighty consecutive patients with trochanteric fractures were divided into two groups according to treatment technique (osteosynthesis and arthroplasty). We evaluated patient data including age, sex, time to surgery, total hospital stay, transfusion volume, and functional status according to FIM (Functional Independence Measure) scores. Scores for FIM were assessed three times: prior to fracture, six months after surgery, and one year after surgery. Results: Patients who received osteosynthesis had shorter hospital stays than arthroplasty patients. The arthroplasty group had significantly higher functional independence six months after surgery, while no difference was detected one year after surgery. Patient age, transfusion volume, and FIM scores were detected as significant predictors of mortality. Conclusion: Trochanteric fractures lead to unavoidable functional loss, although this can be reduced in the short term by treating with arthroplasty instead of osteosynthesis. Age, transfusion and functional situation predict one-year mortality for patients with trochanteric fractures. The patient’s functional situation must be considered when choosing treatment for trochanteric fractures in order to reduce patient morbidity. Level of Evidence II; Therapeutic prospective study.
DOI: 10.6084/m9.figshare.6503723.v1
title: IS FUNCTIONAL OUTCOME BETTER AFTER ARTHROPLASTY FOR TROCHANTERIC FRACTURES IN OLDER ADULTS?

description: ABSTRACT Objectives: This article evaluated functional recovery and mortality after surgery to repair trochanteric fracture with regard to treatment technique through one year of follow-up. Method: Eighty consecutive patients with trochanteric fractures were divided into two groups according to treatment technique (osteosynthesis and arthroplasty). We evaluated patient data including age, sex, time to surgery, total hospital stay, transfusion volume, and functional status according to FIM (Functional Independence Measure) scores. Scores for FIM were assessed three times: prior to fracture, six months after surgery, and one year after surgery. Results: Patients who received osteosynthesis had shorter hospital stays than arthroplasty patients. The arthroplasty group had significantly higher functional independence six months after surgery, while no difference was detected one year after surgery. Patient age, transfusion volume, and FIM scores were detected as significant predictors of mortality. Conclusion: Trochanteric fractures lead to unavoidable functional loss, although this can be reduced in the short term by treating with arthroplasty instead of osteosynthesis. Age, transfusion and functional situation predict one-year mortality for patients with trochanteric fractures. The patient’s functional situation must be considered when choosing treatment for trochanteric fractures in order to reduce patient morbidity. Level of Evidence II; Therapeutic prospective study.
DOI: 10.6084/m9.figshare.6503720
title: Salt stress and temperatures on the germination and initial growth of ‘jurema-de-embira’ (Mimosa ophthalmocentra) seedlings

description: ABSTRACT The objective of this study was to evaluate the effects of salinity on the germination and initial growth of ‘jurema-de-embira’ (Mimosa ophthalmocentra) seedlings at different temperatures. The experiment was installed in a completely randomized design, in a factorial scheme of eight salt concentrations (0; 4.0; 8.0; 12.0; 16.0; 20.0; 24.0 and 28.0 dS m-1) and four temperatures (25, 30, 35 and 20-30 °C) in four replicates of 25 seeds under an 8-h photoperiod in Biochemical Oxygen Demand germinators. The variables analyzed were: germination, germination speed index, shoot and root lengths, and shoot, root and total dry matter. Temperature variation influences the response of ‘jurema-de-embira’ seeds to salinity, and the salt stress is intensified by the increase in temperature. ‘Jurema-de-embira’ is tolerant to salt stress in the germination stage, showing satisfactory germination up to the salinity level 20 dS m-1, at temperatures below 30 °C. The initial growth of ‘jurema-de-embira’ plants is satisfactory up to salinity of 12 dS m-1, at temperatures below 30 °C.
DOI: 10.6084/m9.figshare.6503720.v1
title: Salt stress and temperatures on the germination and initial growth of ‘jurema-de-embira’ (Mimosa ophthalmocentra) seedlings

description: ABSTRACT The objective of this study was to evaluate the effects of salinity on the germination and initial growth of ‘jurema-de-embira’ (Mimosa ophthalmocentra) seedlings at different temperatures. The experiment was installed in a completely randomized design, in a factorial scheme of eight salt concentrations (0; 4.0; 8.0; 12.0; 16.0; 20.0; 24.0 and 28.0 dS m-1) and four temperatures (25, 30, 35 and 20-30 °C) in four replicates of 25 seeds under an 8-h photoperiod in Biochemical Oxygen Demand germinators. The variables analyzed were: germination, germination speed index, shoot and root lengths, and shoot, root and total dry matter. Temperature variation influences the response of ‘jurema-de-embira’ seeds to salinity, and the salt stress is intensified by the increase in temperature. ‘Jurema-de-embira’ is tolerant to salt stress in the germination stage, showing satisfactory germination up to the salinity level 20 dS m-1, at temperatures below 30 °C. The initial growth of ‘jurema-de-embira’ plants is satisfactory up to salinity of 12 dS m-1, at temperatures below 30 °C.
DOI: 10.6084/m9.figshare.6503711
title: CHEMICAL COMPOSITIONS AND ANTIOXIDANT AND ANTIMICROBIAL ACTIVITIES OF PROPOLIS PRODUCED BY Frieseomelitta longipes AND Apis mellifera BEES

description: In this study, we investigated the chemical compositions and antioxidant and antimicrobial activities of propolis produced by the stingless bee Frieseomelitta longipes and the honeybee Apis mellifera collected from colonies in North Brazil. In terms of volatile composition, both mono- and sesquiterpenes were detected in the propolis of F. longipes while only sesquiterpenes were detected in that of A. mellifera. Out of 50 volatiles identified in all samples, 26 were found exclusively in F. longipes propolis and 8 were found exclusively in A. mellifera propolis. The chemical profiles of the propolis extracts were determined by atmospheric pressure chemical ionization-mass spectrometry and liquid chromatography-electrospray ionization-tandem mass spectrometry allowed to identify several prenylated benzophenones. A. mellifera extracts exhibited major antioxidant activity as assessed by the 2,2-diphenyl-1-picrylhydrazyl method and all extracts exhibited antioxidant activity as assessed by the β-carotene/linoleic acid method. The ethanolic extracts of the propolis showed promisor activity against all tested microorganisms.
DOI: 10.6084/m9.figshare.6503711.v1
title: CHEMICAL COMPOSITIONS AND ANTIOXIDANT AND ANTIMICROBIAL ACTIVITIES OF PROPOLIS PRODUCED BY Frieseomelitta longipes AND Apis mellifera BEES

description: In this study, we investigated the chemical compositions and antioxidant and antimicrobial activities of propolis produced by the stingless bee Frieseomelitta longipes and the honeybee Apis mellifera collected from colonies in North Brazil. In terms of volatile composition, both mono- and sesquiterpenes were detected in the propolis of F. longipes while only sesquiterpenes were detected in that of A. mellifera. Out of 50 volatiles identified in all samples, 26 were found exclusively in F. longipes propolis and 8 were found exclusively in A. mellifera propolis. The chemical profiles of the propolis extracts were determined by atmospheric pressure chemical ionization-mass spectrometry and liquid chromatography-electrospray ionization-tandem mass spectrometry allowed to identify several prenylated benzophenones. A. mellifera extracts exhibited major antioxidant activity as assessed by the 2,2-diphenyl-1-picrylhydrazyl method and all extracts exhibited antioxidant activity as assessed by the β-carotene/linoleic acid method. The ethanolic extracts of the propolis showed promisor activity against all tested microorganisms.
DOI: 10.6084/m9.figshare.6503705
title: Standardization of the infusion sequence of antineoplastic drugs used in the treatment of breast and colorectal cancers

description: ABSTRACT The definition of antineoplastic administration sequences can help planning of therapeutic regimens in a more rational way, and thus optimize chemotherapy effects on patients, increasing efficacy and reducing toxic effects. In this way, this study aimed to evaluate the infusion order of antineoplastic agents of the main therapeutic protocols used in the treatment of colorectal and breast cancer which are used in a tertiary hospital, identifying possible interactions dependent on the infusion sequence. For the definition of protocols adopted in the hospital, medical prescriptions were used in the period of January to March 2016 and a literature review was conducted to search for studies assessing the sequence of administering the selected regimens. The databases used were SciELO, LILACS and MEDLINE, in addition to Micromedex Solutions® and UpToDate®. A total of 19 protocols were identified for antineoplastic therapy, 11 for colorectal cancer and 8 for breast cancer. The selected articles provided evidence for administration order of 19 protocols, and three protocols did no report relevance of infusion sequence. Sequence-dependent interactions were mainly related to toxicity, pharmacokinetics and efficacy of the drug combination. The definition of the infusion sequence has a great impact on the optimization of therapy, increasing efficacy and safety of the protocols containing combined antineoplastic therapies.
DOI: 10.6084/m9.figshare.6503705.v1
title: Standardization of the infusion sequence of antineoplastic drugs used in the treatment of breast and colorectal cancers

description: ABSTRACT The definition of antineoplastic administration sequences can help planning of therapeutic regimens in a more rational way, and thus optimize chemotherapy effects on patients, increasing efficacy and reducing toxic effects. In this way, this study aimed to evaluate the infusion order of antineoplastic agents of the main therapeutic protocols used in the treatment of colorectal and breast cancer which are used in a tertiary hospital, identifying possible interactions dependent on the infusion sequence. For the definition of protocols adopted in the hospital, medical prescriptions were used in the period of January to March 2016 and a literature review was conducted to search for studies assessing the sequence of administering the selected regimens. The databases used were SciELO, LILACS and MEDLINE, in addition to Micromedex Solutions® and UpToDate®. A total of 19 protocols were identified for antineoplastic therapy, 11 for colorectal cancer and 8 for breast cancer. The selected articles provided evidence for administration order of 19 protocols, and three protocols did no report relevance of infusion sequence. Sequence-dependent interactions were mainly related to toxicity, pharmacokinetics and efficacy of the drug combination. The definition of the infusion sequence has a great impact on the optimization of therapy, increasing efficacy and safety of the protocols containing combined antineoplastic therapies.
DOI: 10.6084/m9.figshare.6503702
title: An association study of FOXO3 variant and longevity

description: Abstract Human longevity is a polygenic and multifactorial trait. Pathways related to lifespan are complex and involve molecular, cellular, and environmental processes. In this analytical observational study, we evaluated the relationship between environment factors, oxidative stress status, DNA integrity level, and the association of FOXO3 (rs2802292), SOD2 (rs4880), APOE (rs429358 and rs7412), and SIRT1 (rs2273773) polymorphisms with longevity in oldest-old individuals from southeastern Brazil. We found an association between the FOXO3 GG genotype and gender. While lifestyle, anthropometric, and biochemical characteristics showed significant results, DNA damage and oxidative stress were not related to lifespan. We found that long-lived individuals with FOXO3 GT genotype had low levels of triglycerides. This study is the first to demonstrate that FOXO3 could be a candidate gene for longevity in the Brazilian population. These results are important in terms of provisions of health care for age-related diseases and lifespan, and provide insight for further research on epigenetic, gene regulation, and expression in oldest-old individuals.
DOI: 10.6084/m9.figshare.6503702.v1
title: An association study of FOXO3 variant and longevity

description: Abstract Human longevity is a polygenic and multifactorial trait. Pathways related to lifespan are complex and involve molecular, cellular, and environmental processes. In this analytical observational study, we evaluated the relationship between environment factors, oxidative stress status, DNA integrity level, and the association of FOXO3 (rs2802292), SOD2 (rs4880), APOE (rs429358 and rs7412), and SIRT1 (rs2273773) polymorphisms with longevity in oldest-old individuals from southeastern Brazil. We found an association between the FOXO3 GG genotype and gender. While lifestyle, anthropometric, and biochemical characteristics showed significant results, DNA damage and oxidative stress were not related to lifespan. We found that long-lived individuals with FOXO3 GT genotype had low levels of triglycerides. This study is the first to demonstrate that FOXO3 could be a candidate gene for longevity in the Brazilian population. These results are important in terms of provisions of health care for age-related diseases and lifespan, and provide insight for further research on epigenetic, gene regulation, and expression in oldest-old individuals.
DOI: 10.6084/m9.figshare.6503696
title: Resistance of sugarcane cultivars to Mahanarva fimbriolata

description: ABSTRACT The spittlebug Mahanarva fimbriolata (Stål) (Hemiptera: Cercopidae) is one of the most important pest of sugarcane in Brazil. Population control measures are currently restricted to the use of chemical insecticides and the fungus Metarhizium anisopliae, in part because very little information exists regarding the resistance of sugarcane cultivars. Therefore, the aim of this study was to evaluate the resistance mechanisms of 18 sugarcane cultivars to M. fimbriolata to provide information for growers hoping to manage this pest. Isolated buds of each cultivar were planted in pots and maintained in a greenhouse for approximately three months. The pots were then moved to climate-controlled chambers (26 ± 1 ºC; 70 ± 10% RH; 12 h photoperiod) to carry out laboratory tests to evaluate adult feeding and female oviposition preferences (using both free-choice and no-choice tests) as well as the effects of the cultivars on nymph development and the cultivars tolerance to the pest attack. The least attractive cultivar for adult feeding and oviposition in free-choice test was RB867515, which was also one of those that received the fewest eggs in the no-choice oviposition tests. Cultivar CTC9 showed the highest level of antibiosis resistance, with a root nymph survival rate of 52.5%. Finally, cultivar RB966928 was the most tolerant to M. fimbriolata, but it showed 19% reduction in aboveground biomass weight due to the pest.
DOI: 10.6084/m9.figshare.6503696.v1
title: Resistance of sugarcane cultivars to Mahanarva fimbriolata

description: ABSTRACT The spittlebug Mahanarva fimbriolata (Stål) (Hemiptera: Cercopidae) is one of the most important pest of sugarcane in Brazil. Population control measures are currently restricted to the use of chemical insecticides and the fungus Metarhizium anisopliae, in part because very little information exists regarding the resistance of sugarcane cultivars. Therefore, the aim of this study was to evaluate the resistance mechanisms of 18 sugarcane cultivars to M. fimbriolata to provide information for growers hoping to manage this pest. Isolated buds of each cultivar were planted in pots and maintained in a greenhouse for approximately three months. The pots were then moved to climate-controlled chambers (26 ± 1 ºC; 70 ± 10% RH; 12 h photoperiod) to carry out laboratory tests to evaluate adult feeding and female oviposition preferences (using both free-choice and no-choice tests) as well as the effects of the cultivars on nymph development and the cultivars tolerance to the pest attack. The least attractive cultivar for adult feeding and oviposition in free-choice test was RB867515, which was also one of those that received the fewest eggs in the no-choice oviposition tests. Cultivar CTC9 showed the highest level of antibiosis resistance, with a root nymph survival rate of 52.5%. Finally, cultivar RB966928 was the most tolerant to M. fimbriolata, but it showed 19% reduction in aboveground biomass weight due to the pest.
DOI: 10.6084/m9.figshare.6503693
title: Parallel Implementation of a Two-level Algebraic ILU(k)-based Domain Decomposition Preconditioner

description: ABSTRACT We discuss the parallel implementation of a two-level algebraic ILU(k)-based domain decomposition preconditioner using the PETSc library. We present strategies to improve performance and minimize communication among processes during setup and application phases. We compare our implementation with an off-the-shelf preconditioner in PETSc for solving linear systems arising in reservoir simulation problems, and show that for some cases our implementation performs better.
DOI: 10.6084/m9.figshare.6503693.v1
title: Parallel Implementation of a Two-level Algebraic ILU(k)-based Domain Decomposition Preconditioner

description: ABSTRACT We discuss the parallel implementation of a two-level algebraic ILU(k)-based domain decomposition preconditioner using the PETSc library. We present strategies to improve performance and minimize communication among processes during setup and application phases. We compare our implementation with an off-the-shelf preconditioner in PETSc for solving linear systems arising in reservoir simulation problems, and show that for some cases our implementation performs better.
DOI: 10.6084/m9.figshare.6503690
title: Photochemical efficiency in cladodes of ‘Gigante’ cactus pear cultivated under different spacings and organic fertilization

description: ABSTRACT The objective of this study was to determine the photochemical efficiency of ‘Gigante’ cactus pear cultivated under different spacings and bovine manure doses in the semi-arid region. The experiment was conducted in a randomized block design in a 4 x 3 x 7 factorial scheme, with three replicates. The first factor consisted of four doses of organic fertilization (0, 30, 60 and 90 Mg ha-1 year-1 of bovine manure), the second one, of three spacings (1.0 x 0.5, 2.0 x 0.25 and 3.0 x 1.0 x 0.25 m) and the third one of seven reading times (6, 8, 10, 12, 14, 16 and 18 h). Chlorophyll a fluorescence readings were taken in cactus pear cladodes in the dry and rainy seasons using a pulse-modulated fluorometer. Cladodes of ‘Gigante’ cactus pear cultivated under different spacings and bovine manure doses undergo changes in photosystem II during the dry season under the physiographic conditions of the semi-arid region in Bahia. During the rainy season in the semi-arid region, the photosynthetic yield in cactus pear cladodes is considered ideal.