cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gfyrpn
title: Occurrence Download

description: A dataset containing 1949 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rorippa sylvestris",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1949 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040763-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w22ywk
title: Occurrence Download

description: A dataset containing 895 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-92.31474 -5.28061,-67.17820 -5.28061,-67.17820 4.78438,-92.31474 4.78438,-92.31474 -5.28061))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bixa orellana"
 ]
}

 The dataset includes 895 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040764-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4p3zh9
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rorippa sylvestris",
 "Country is Uzbekistan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040765-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16938232
title: Imputed New Zealand Woody Plants Functional Trait Dataset

description: This is a data collection and processing pipeline for plant traits of New Zealand species aggregated from two database and field work.Raw and imputed data is provided and the code to generate the imputed data from the raw data is also included. A jupyter notebook is provided to visualize the data and the imputation quality.Please refer to the README.md file in this repostiroy for details about how to use it and content descriptions. This publication is intended for peer review purposes and therefore anonymised.
DOI: 10.15468/dl.gpm5tv
title: Occurrence Download

description: A dataset containing 291000 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "TaxonKey is one of (Aponogeton distachyos, Arthurdendyus triangulatus, Cabomba caroliniana, Callosciurus finlaysonii, Cherax destructor, Corvus splendens, Crassula helmsii, Elodea densa, Eriocheir sinensis, Erythranthe guttata, Faxonius immunis, Faxonius juvenilis, Faxonius rusticus, Faxonius virilis, Gambusia affinis, Heracleum mantegazzianum, Heracleum persicum, Heracleum pubescens, Houttuynia cordata, , Impatiens glandulifera, Koenigia polystachya, Lagarosiphon major, Lepomis gibbosus, Limnoperna fortunei, Ludwigia grandiflora, Ludwigia peploides, Lysichiton americanus, Morone americana, Muntiacus reevesi, Myriophyllum aquaticum, Myriophyllum heterophyllum, Pacifastacus leniusculus, Petasites japonicus, Pontederia cordata, Procambarus acutus, Procambarus clarkii, Procambarus virginalis, Pseudorasbora parva, Pycnonotus cafer, Saururus cernuus, Sciurus carolinensis, Sciurus niger, Solenopsis invicta, Solenopsis richteri, Threskiornis aethiopicus, Vespa velutina, Zizania latifolia)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 291000 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040744-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9v8zjx
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sinapis arvensis",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 27 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040767-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sjnxwm
title: Occurrence Download

description: A dataset containing 876 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sinapis arvensis",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 876 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040768-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2gfrrs
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sinapis arvensis",
 "Country is Belarus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040769-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5y832k
title: Occurrence Download

description: A dataset containing 31765 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Solanum americanum"
 ]
}

 The dataset includes 31765 records from 748 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040766-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xg84y6
title: Occurrence Download

description: A dataset containing 71607 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bombus pensylvanicus"
 ]
}

 The dataset includes 71607 records from 106 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040721-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.muskw9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sinapis arvensis",
 "Country is Bhutan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040770-250811113504898/datasets/export for details.
DOI: 10.15468/dl.3t6jg8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sinapis arvensis",
 "Country is Bosnia and Herzegovina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040771-250811113504898/datasets/export for details.
DOI: 10.15468/dl.5cd485
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sinapis arvensis",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040772-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5v98047k
title: MassIVE MSV000098928 - Structural proteomics approaches for organophosphate pesticide impacts on protein functions
title: Proteins were obtained from A549 cells exposed to paraoxon at different concentrations for 3 hr, then lysed using a pestle homogenizer. Proteins were subjected to three types of analyses: thermal proteome profiling (TPP), limited proteolysis (LiP), and activity-based protein profiling (ABPP) using the serine hydrolase probe FP2 and enrichment. The proteins for each analysis were then digested, and peptides were analyzed by LC-MS/MS. TPP and ABPP data were searched with MS-GF+ using PNNL's DMS processing pipeline. LiP data were analyzed using FragPipe. Cells were also subjected to a modified Folch extraction to isolate lipids for analysis.
DOI: 10.15468/dl.4f77kg
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sinapis arvensis",
 "Country is Bulgaria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040773-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.an3tbu
title: Occurrence Download

description: A dataset containing 819 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sinapis arvensis",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 819 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040774-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s58u74
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sinapis arvensis",
 "Country is Chile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040775-250811113504898/datasets/export for details.
DOI: 10.15468/dl.x2fywh
title: Occurrence Download

description: A dataset containing 12459 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Solanum chenopodioides"
 ]
}

 The dataset includes 12459 records from 329 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040776-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18263406
title: Deep mutational scanning of CHD2 for variant interpretation in neurodevelopmental disorders

description: Project description De novo pathogenic variants in CHD2 are one of the most common causes of the neurodevelopmental disorders (NDDs) that include refractory epilepsy, intellectual disability and autism spectrum disorders. In addition, somatic CHD2 variants, acquired later in life, are highly recurrent in certain types of leukemias. For both types of conditions, loss-of-CHD2 function is the likely pathogenic mechanism, and most variants are truncations. However, there is also evidence that missense variants can disrupt or abrogate CHD2 function, leading to loss-of-function, though they are harder to interpret, and many are classified as variants of uncertain significance (VUS). VUS are one of the biggest challenges for human geneticists, and represent the biggest class of variants returned on clinical genetic test reports, in part because we have a poor understanding of how missense variants impact protein function. Our research addresses these challenges by developing a multiplex assay of variant effect (MAVE) to discriminate between pathogenic and benign missense variants. We leveraged the fact that CHD2 is a chromatin remodeler and thus affects gene expression, protein abundance and the DNA methylation landscape to attempt to develop high-throughput assays.

We aimed to establish a CHD2 protein signature using proteomics from wildtype and mutant cells in HAP1 cells. While we did identify differentially abundant proteins, these did not validate in additional cell lines using flow cytometry antibody-based assays.

Sample processing protocol: To test for a CHD2 proteomic signature we generated two CHD2 knockout clonal HAP1 cell lines using prime editing. Cells were lysed and run on an SDS PAGE gel, stained with Coomassie blue, purified, digestion with trypsin enzyme and subject to 60-minutes of LC-MS/MS data acquisition for bottom-up proteomics. 

Data processing protocol:  Peptides were identified using the Scaffold 5 software, peptide counts were exported and differentially abundant proteins were defined by a fold change between wildtype (n=2) and mutant (n=2) using a p-value (t-test) cutoff <0.00005.
DOI: 10.5281/zenodo.18263407
title: Deep mutational scanning of CHD2 for variant interpretation in neurodevelopmental disorders

description: Project description De novo pathogenic variants in CHD2 are one of the most common causes of the neurodevelopmental disorders (NDDs) that include refractory epilepsy, intellectual disability and autism spectrum disorders. In addition, somatic CHD2 variants, acquired later in life, are highly recurrent in certain types of leukemias. For both types of conditions, loss-of-CHD2 function is the likely pathogenic mechanism, and most variants are truncations. However, there is also evidence that missense variants can disrupt or abrogate CHD2 function, leading to loss-of-function, though they are harder to interpret, and many are classified as variants of uncertain significance (VUS). VUS are one of the biggest challenges for human geneticists, and represent the biggest class of variants returned on clinical genetic test reports, in part because we have a poor understanding of how missense variants impact protein function. Our research addresses these challenges by developing a multiplex assay of variant effect (MAVE) to discriminate between pathogenic and benign missense variants. We leveraged the fact that CHD2 is a chromatin remodeler and thus affects gene expression, protein abundance and the DNA methylation landscape to attempt to develop high-throughput assays.

We aimed to establish a CHD2 protein signature using proteomics from wildtype and mutant cells in HAP1 cells. While we did identify differentially abundant proteins, these did not validate in additional cell lines using flow cytometry antibody-based assays.

Sample processing protocol: To test for a CHD2 proteomic signature we generated two CHD2 knockout clonal HAP1 cell lines using prime editing. Cells were lysed and run on an SDS PAGE gel, stained with Coomassie blue, purified, digestion with trypsin enzyme and subject to 60-minutes of LC-MS/MS data acquisition for bottom-up proteomics. 

Data processing protocol:  Peptides were identified using the Scaffold 5 software, peptide counts were exported and differentially abundant proteins were defined by a fold change between wildtype (n=2) and mutant (n=2) using a p-value (t-test) cutoff <0.00005.
DOI: 10.18130/v3/5xikmi
title: Data for: Application of an Optical Emission Spectroscopy Sensor Design to a Dual-Mode Scramjet Flowpath

description: Raw experimental data used for journal publication of optical emission spectroscopy sensor design and application in the UVASCF.
DOI: 10.5281/zenodo.18263724
title: Citation research references

description: Sharing research data helps other researchers by promoting

transparency, enabling the reproducibility of results, and fostering new collaboration and scientific inquiry.
DOI: 10.5281/zenodo.18263725
title: Citation research references

description: Sharing research data helps other researchers by promoting

transparency, enabling the reproducibility of results, and fostering new collaboration and scientific inquiry.
DOI: 10.15468/dl.aqntwt
title: Occurrence Download

description: A dataset containing 4080 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Juglans neotropica"
 ]
}

 The dataset includes 4080 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013019-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29390759.v2
title: <b>Aridity regulates the destabilizing effect of multiple resource additions on large-scale productivity in Eurasian grasslands</b>

description: All data that support the findings of this study is MRA. Sheet1：Biodiversity and stability in full dataset (n=77, 7 sites ×11 treatments) ；Sheet2: Biodiversity and stability at aridity&lt;0.70 in full dataset (n=33) ；Sheet3: Biodiversity and stability at aridity&gt;0.70 in full dataset(n=44) ；Sheet4: Biodiversity and stability responses to number of added resources (n=70) ；Sheet5: Biodiversity and stability responses to number of added resources at aridity&lt;0.70 (n=30) ；Sheet6: Biodiversity and stability responses to number of added resources at aridity&gt;0.70 (n=40) ；Sheet7: Biodiversity and stability in balanced dataset (n=35, 7 sites ×5 levels) ；Sheet 8: Biodiversity and stability at aridity&lt;0.70 in balanced dataset (n=15) ；Sheet9: Biodiversity and stability at aridity&gt;0.70 in balanced dataset(n=20) ；treatment: cont= control (without addition); 50%=add 50% water; N=nitrogen addition; P=phosphorus addition; K= potassium addition. Fa= The number of added resources. ARD= aridity(1-AI) ；ARDL=aridity level(1,&lt;0.70 ; 2, &gt;0.70); Dominance= dominant species abundance；Biomass = mean community biomass；Biomass_sd = community biomass-standard deviation；AlphaR= alpha richness; BetaR= species spatial turnover (beta richness); GammaR=gamma richness; Spe_asyn=species asynchrony; Spa_asyn=spatial asynchrony; Spe_sta= species stability; Alpha_sta= alpha stability; Gamma_sta= gamma stability.
DOI: 10.15468/dl.wppc7x
title: Occurrence Download

description: A dataset containing 490 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is one of (Albania, Algeria, Cyprus, France, Greece, Iran (Islamic Republic of), Italy, Lebanon, Syrian Arab Republic, Libya, Morocco, Egypt, Croatia, Bosnia and Herzegovina, Palestine, State of, Spain, Tunisia, Türkiye, Kosovo, North Macedonia, Serbia, Israel, Slovenia)",
 "Geometry POLYGON((-180 -90,180 -90,180 48,-180 48,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ceratonia siliqua"
 ]
}

 The dataset includes 490 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013021-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y3e76b
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Gloriosa superba",
 "Year 1000-2020"
 ]
}

 The dataset includes 27 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013020-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/paokuu
title: Replication Data for: 'Digital Distractions with Peer Effects: The Impact of Mobile App Usage on Academic and Labor Market Outcomes'

description: The data and programs replicate tables and figures from "Digital Distractions with Peer Effects: The Impact of Mobile App Usage on Academic and Labor Market Outcomes," by Barwick, Chen, Fu, and Li. Please see the ReadMe file for additional details.
DOI: 10.15468/dl.a8f46t
title: Occurrence Download

description: A dataset containing 190678 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Triturus cristatus"
 ]
}

 The dataset includes 190678 records from 831 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012976-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57841/casdc.0006925
title: 建立适用于ssDNP 研究的酶催化模型的相关数据
DOI: 10.15468/dl.v52d4h
title: Occurrence Download

description: A dataset containing 1516306 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "Month is one of (December, January, February)",
 "OccurrenceStatus is Present",
 "TaxonKey is Sialia sialis",
 "Year 2015-2025"
 ]
}

 The dataset includes 1516306 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012999-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57760/sciencedb.j00133.00647
title: Hateful Meme Detection Dataset
title: Hateful Meme Detection Dataset

description: This data list contains two real-world hateful meme datasets: Harm-P and PrideMM.Harm-P includes a large number of memes that satirize, criticize, or attack the U.S. presidential election, political parties, candidates, and policies.The PrideMM dataset was collected by searching and extracting relevant memes from three popular social media platforms—Facebook, Twitter, and Reddit—using hashtags related to LGBTQ+ discussions to filter the content.
description: This data list contains two real-world hateful meme datasets: Harm-P and PrideMM.Harm-P includes a large number of memes that satirize, criticize, or attack the U.S. presidential election, political parties, candidates, and policies.The PrideMM dataset was collected by searching and extracting relevant memes from three popular social media platforms—Facebook, Twitter, and Reddit—using hashtags related to LGBTQ+ discussions to filter the content.
DOI: 10.7910/dvn/ymvk4k
title: Replication Data for: 'Diversifying Society's Leaders? The Determinants and Causal Effects of Admission to Highly Selective Private Colleges'

description: The data and programs replicate tables and figures from "Diversifying Society's Leaders? The Determinants and Causal Effects of Admission to Highly Selective Private Colleges," by Chetty, Deming, and Friedman. Please see the Readme file for additional details.
DOI: 10.15468/dl.gr5t8d
title: Occurrence Download

description: A dataset containing 4327 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arctotheca calendula",
 "Country is Spain",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4327 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013023-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y5jtse
title: Occurrence Download

description: A dataset containing 30389 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arctotheca calendula",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 30389 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013022-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qgfv8z
title: Occurrence Download

description: A dataset containing 121 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cardiocrinum giganteum",
 "Year 1970-2000"
 ]
}

 The dataset includes 121 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013024-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.