cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20025904
title: Conservation of the Black-collared Swallow, Pygochelidon melanoleuca (Wied, 1820) (Aves: Hirundinidae) in Brazil: potential negative impacts of hydropower plants

description: Abstract: We analyzed the overlap of the range of Pygochelidon melanoleuca in Brazil with active and planned hydropower plants in the country (current and future scenarios). We used the Random Forest, Maxent and Support Vector Machine algorithms to model the potential range of the species, which we then overlapped with the locations of active and planned hydropower plants in order to calculate how much the potential area of this species is and will be affected by them. Approximately 35% of active hydropower plants currently overlap with the potential distribution area of P. melanoleuca, and 44% of planned hydropower plants also coincide with this area. If the implementation of the planned hydropower plants occurs, the suitable habitat necessary for nesting and foraging of P. melanoleuca will be severely compromised.
DOI: 10.6084/m9.figshare.20025904.v1
title: Conservation of the Black-collared Swallow, Pygochelidon melanoleuca (Wied, 1820) (Aves: Hirundinidae) in Brazil: potential negative impacts of hydropower plants

description: Abstract: We analyzed the overlap of the range of Pygochelidon melanoleuca in Brazil with active and planned hydropower plants in the country (current and future scenarios). We used the Random Forest, Maxent and Support Vector Machine algorithms to model the potential range of the species, which we then overlapped with the locations of active and planned hydropower plants in order to calculate how much the potential area of this species is and will be affected by them. Approximately 35% of active hydropower plants currently overlap with the potential distribution area of P. melanoleuca, and 44% of planned hydropower plants also coincide with this area. If the implementation of the planned hydropower plants occurs, the suitable habitat necessary for nesting and foraging of P. melanoleuca will be severely compromised.
DOI: 10.6084/m9.figshare.20025907
title: Multi-taxon inventory and landscape characterization in an agrosystem of the Brazilian Midwest targeted for payment for environmental services

description: Abstract: The replacement of natural landscapes by anthropic environments has led to habitat loss and consequently, to the decline and extinction of many species populations. Several strategies, such as the creation of protected areas (PAs) and payment for ecosystem services have been adopted to mitigate the consequences of this biodiversity crisis. In Rio Verde, Goiás, Brazil, a Water Producer Program (WPP) was established, which provides payment for ecosystem services for the maintenance of riparian vegetation in the region of the Ribeirão Abóbora, a river which supplies the city and metropolitan area. In the absence of environmental diagnostic studies in the region, this present study contributes to reducing some knowledge gaps, through the: (i) characterization of the landscape in the WPP area, (ii) characterization of species of fauna (amphibians, birds, fish, and medium and large terrestrial mammals) and woody flora that occur in this area, and (iii) comparison of species diversity (fauna and flora) found in our study area with the diversity observed in the Cerrado protected area network. Our results reveal a low native vegetation cover (~21% of total area), but we recorded 300 total species: 20 species of anuran amphibians, 100 birds, 10 fish, 16 terrestrial mammals (medium and large), and 154 woody plants. Our sample comprises species considered endemic to the Cerrado (e.g., Anuran - Barycholos terntezi and Mammal - Callithrix penicillata), threatened species (e.g., Mammals - Herpailurus yagouaroundi, Myrmecophaga tridactyla and Tapirus terrestris), and exotic invasive species (Mammal - Sus scrofa). The results presented in this study are relevant and may help in the proposal of management actions within the scope of this important program of payment for environmental services.
DOI: 10.6084/m9.figshare.20025907.v1
title: Multi-taxon inventory and landscape characterization in an agrosystem of the Brazilian Midwest targeted for payment for environmental services

description: Abstract: The replacement of natural landscapes by anthropic environments has led to habitat loss and consequently, to the decline and extinction of many species populations. Several strategies, such as the creation of protected areas (PAs) and payment for ecosystem services have been adopted to mitigate the consequences of this biodiversity crisis. In Rio Verde, Goiás, Brazil, a Water Producer Program (WPP) was established, which provides payment for ecosystem services for the maintenance of riparian vegetation in the region of the Ribeirão Abóbora, a river which supplies the city and metropolitan area. In the absence of environmental diagnostic studies in the region, this present study contributes to reducing some knowledge gaps, through the: (i) characterization of the landscape in the WPP area, (ii) characterization of species of fauna (amphibians, birds, fish, and medium and large terrestrial mammals) and woody flora that occur in this area, and (iii) comparison of species diversity (fauna and flora) found in our study area with the diversity observed in the Cerrado protected area network. Our results reveal a low native vegetation cover (~21% of total area), but we recorded 300 total species: 20 species of anuran amphibians, 100 birds, 10 fish, 16 terrestrial mammals (medium and large), and 154 woody plants. Our sample comprises species considered endemic to the Cerrado (e.g., Anuran - Barycholos terntezi and Mammal - Callithrix penicillata), threatened species (e.g., Mammals - Herpailurus yagouaroundi, Myrmecophaga tridactyla and Tapirus terrestris), and exotic invasive species (Mammal - Sus scrofa). The results presented in this study are relevant and may help in the proposal of management actions within the scope of this important program of payment for environmental services.
DOI: 10.6084/m9.figshare.20025914
title: Ferns and lycophytes in Chapada das Mesas National Park and surroundings, Maranhão State, Brazil

description: Abstract: In Brazil, the number of floristic inventories involving ferns and lycophytes in the Cerrado domain is considerable. However, most of the diversity is recorded for states in the Central-West Region. In addition to the Cerrado domain, Maranhão State contains part of Amazonia and a small portion of the Caatinga. However, for this state, ferns and lycophytes are poorly sampled in floristic studies and data related to the diversity of these species are insufficient. Due to the scarcity of data about these groups, conducting floristic inventories in the state is extremely important, mainly in protected areas that contain regional vegetation near primary vegetation. Thus, the objective of the present study was to conduct a floristic inventory of the fern and lycophyte species in Chapada das Mesas National Park. We identified 86 species: 69 species of ferns, distributed in 35 genera and 17 families; and 17 species of lycophytes, distributed in five genera and three families. Among the species identified, five are new records for the Northeast Region of Brazil, twenty-one are new records for Maranhão State and eleven are new records for the Cerrado; until now, these were only recorded for Amazonia and the Atlantic Forest. The most representative families were Pteridaceae with 14 species, Selaginellaceae with 12 species, Thelypteridaceae with 11 species, and Anemiaceae, Hymenophyllaceae and Dryopteridaceae with six species each. The rupicolous life form was predominant. The new occurrence records for the Cerrado, Northeast Region and Maranhão are evidence that floristic research of ferns and lycophytes is still insufficient in these areas, and a greater sampling effort is needed to increase what is known about the diversity of these plants.
DOI: 10.6084/m9.figshare.20025914.v1
title: Ferns and lycophytes in Chapada das Mesas National Park and surroundings, Maranhão State, Brazil

description: Abstract: In Brazil, the number of floristic inventories involving ferns and lycophytes in the Cerrado domain is considerable. However, most of the diversity is recorded for states in the Central-West Region. In addition to the Cerrado domain, Maranhão State contains part of Amazonia and a small portion of the Caatinga. However, for this state, ferns and lycophytes are poorly sampled in floristic studies and data related to the diversity of these species are insufficient. Due to the scarcity of data about these groups, conducting floristic inventories in the state is extremely important, mainly in protected areas that contain regional vegetation near primary vegetation. Thus, the objective of the present study was to conduct a floristic inventory of the fern and lycophyte species in Chapada das Mesas National Park. We identified 86 species: 69 species of ferns, distributed in 35 genera and 17 families; and 17 species of lycophytes, distributed in five genera and three families. Among the species identified, five are new records for the Northeast Region of Brazil, twenty-one are new records for Maranhão State and eleven are new records for the Cerrado; until now, these were only recorded for Amazonia and the Atlantic Forest. The most representative families were Pteridaceae with 14 species, Selaginellaceae with 12 species, Thelypteridaceae with 11 species, and Anemiaceae, Hymenophyllaceae and Dryopteridaceae with six species each. The rupicolous life form was predominant. The new occurrence records for the Cerrado, Northeast Region and Maranhão are evidence that floristic research of ferns and lycophytes is still insufficient in these areas, and a greater sampling effort is needed to increase what is known about the diversity of these plants.
DOI: 10.6084/m9.figshare.20025922
title: Anuran species composition and density estimates from an Atlantic Forest area within the APA Serra da Mantiqueira, Rio de Janeiro state, Brazil

description: Abstract: Among amphibian species from high elevation areas in the Brazilian Atlantic Forest there is a high percentage of threatened and endemic species, but there is still a relative scarcity of local inventories for these organisms. Here, we present data on anuran composition, relative abundance and estimated densities for leaf-litter frogs from an Atlantic Forest area within the APA Serra da Mantiqueira, in Rio de Janeiro state, Brazil, based on results of a short-term survey carried out at altitudes of 1,350-1,750 m, in November 2005 (with additional records from surveys made in 2010 and 2011). Three sampling methods were used during the 2005 survey: plot sampling, visual encounter surveys (VES; performed during the day, at the dusk, and at night), and pitfall traps with drift fences; only non-standardized visual searches were employed during the 2010 and 2011 surveys. We recorded 24 species, with the direct-developer Ischnocnema sp. (gr. lactea) being the most abundant. Most anurans (90% of all individuals) sampled by VES were captured during the crepuscular and nocturnal periods. The estimated density of the local leaf-litter frog assemblage based on plot sampling was 18.4 ind/100 m2, which is one of the highest values currently reported for Atlantic Rainforest areas. This is the first study analyzing the anuran fauna composition of an Atlantic Forest area within the APA Serra da Mantiqueira and adds to the body of knowledge on the fauna of the southern region of Rio de Janeiro state.
DOI: 10.25375/uct.20021726
title: Application of a trait-based climate change vulnerability assessment to determine management priorities at protected area scale - Assessment Data

description: Within this upload are datasets for the reptile and amphibian assessments, respectively. This data was collated to assess the climate change vulnerability of reptile and amphibians species found in Table Mountain National Park. <br> Each of these datasets contains the following tabs of information: Trait criteria: The species traits for which data was collated, variables used to score each trait, and the vulnerability thresholds assigned to each trait. Expert weighting refers to the degree of relative importance a trait has on the sensitivity or adaptive capacity of a species when considered independently from the other traits. Data: Each of the species examined for each respective assessment, life history information for each trait and species, and sources for such information. References: The full reference for each life history data source.
DOI: 10.6084/m9.figshare.20025922.v1
title: Anuran species composition and density estimates from an Atlantic Forest area within the APA Serra da Mantiqueira, Rio de Janeiro state, Brazil

description: Abstract: Among amphibian species from high elevation areas in the Brazilian Atlantic Forest there is a high percentage of threatened and endemic species, but there is still a relative scarcity of local inventories for these organisms. Here, we present data on anuran composition, relative abundance and estimated densities for leaf-litter frogs from an Atlantic Forest area within the APA Serra da Mantiqueira, in Rio de Janeiro state, Brazil, based on results of a short-term survey carried out at altitudes of 1,350-1,750 m, in November 2005 (with additional records from surveys made in 2010 and 2011). Three sampling methods were used during the 2005 survey: plot sampling, visual encounter surveys (VES; performed during the day, at the dusk, and at night), and pitfall traps with drift fences; only non-standardized visual searches were employed during the 2010 and 2011 surveys. We recorded 24 species, with the direct-developer Ischnocnema sp. (gr. lactea) being the most abundant. Most anurans (90% of all individuals) sampled by VES were captured during the crepuscular and nocturnal periods. The estimated density of the local leaf-litter frog assemblage based on plot sampling was 18.4 ind/100 m2, which is one of the highest values currently reported for Atlantic Rainforest areas. This is the first study analyzing the anuran fauna composition of an Atlantic Forest area within the APA Serra da Mantiqueira and adds to the body of knowledge on the fauna of the southern region of Rio de Janeiro state.
DOI: 10.6084/m9.figshare.20025923
title: Fishes of the Mitú Region: middle basin of the río Vaupés, Colombian Amazon

description: Abstract: The Amazon River basin hosts the most diverse freshwater ichthyofauna in the world, and yet huge areas of the basin remain unexplored. This is the case for the upper tributaries of the rio Negro, especially those draining the Colombian territory. Here we present a list of 224 species derived from the examination of specimens collected in the Mitú region (Vaupés Department, Colombia), the middle basin of the río Vaupés. Of the species identified in our study, 10 species are recorded from Colombia for the first time, and 26 species are newly recorded from the Colombian Amazon. The number of species we present here comprise almost one-third of the known species diversity of the Colombian Amazon and nearly a tenth of the total number of those known across the entirety of the Amazon basin. The most diverse orders were Characiformes (120 species) and Siluriformes (65 species), and the remaining six orders comprised less than 20% of total species. The study area comprised blackwater systems, which are considered to be nutrient-poor environments. We discuss some ecological aspects that might explain how this highly diverse ichthyofauna originates and is maintain in less productive systems. The list presented here adds an important number of new records and complements the information derived from previous studies, carried out thus far with regards to the fish fauna of the Colombian Amazon.
DOI: 10.25375/uct.20021726.v1
title: Application of a trait-based climate change vulnerability assessment to determine management priorities at protected area scale - Assessment Data

description: Within this upload are datasets for the reptile and amphibian assessments, respectively. This data was collated to assess the climate change vulnerability of reptile and amphibians species found in Table Mountain National Park. <br> Each of these datasets contains the following tabs of information: Trait criteria: The species traits for which data was collated, variables used to score each trait, and the vulnerability thresholds assigned to each trait. Expert weighting refers to the degree of relative importance a trait has on the sensitivity or adaptive capacity of a species when considered independently from the other traits. Data: Each of the species examined for each respective assessment, life history information for each trait and species, and sources for such information. References: The full reference for each life history data source.
DOI: 10.6084/m9.figshare.20025923.v1
title: Fishes of the Mitú Region: middle basin of the río Vaupés, Colombian Amazon

description: Abstract: The Amazon River basin hosts the most diverse freshwater ichthyofauna in the world, and yet huge areas of the basin remain unexplored. This is the case for the upper tributaries of the rio Negro, especially those draining the Colombian territory. Here we present a list of 224 species derived from the examination of specimens collected in the Mitú region (Vaupés Department, Colombia), the middle basin of the río Vaupés. Of the species identified in our study, 10 species are recorded from Colombia for the first time, and 26 species are newly recorded from the Colombian Amazon. The number of species we present here comprise almost one-third of the known species diversity of the Colombian Amazon and nearly a tenth of the total number of those known across the entirety of the Amazon basin. The most diverse orders were Characiformes (120 species) and Siluriformes (65 species), and the remaining six orders comprised less than 20% of total species. The study area comprised blackwater systems, which are considered to be nutrient-poor environments. We discuss some ecological aspects that might explain how this highly diverse ichthyofauna originates and is maintain in less productive systems. The list presented here adds an important number of new records and complements the information derived from previous studies, carried out thus far with regards to the fish fauna of the Colombian Amazon.
DOI: 10.6084/m9.figshare.20025927
title: Data from Effect of sex and autism spectrum disorder on oxytocin receptor binding and mRNA expression in the dopaminergic pars compacta of the human substantia nigra

description: Oxytocin is an endogenous neuropeptide hormone that influences social behaviour and bonding in mammals. Variations in oxytocin receptor (OXTR) expression may play a role in the social deficits seen in autism spectrum disorder. Previous studies from our laboratory found a dense population of OXTR in the human substantia nigra (SN), a basal ganglia structure in the midbrain that is important in both movement and reward pathways. Here, we explore whether differences in OXTR can be identified in the dopaminergic SN pars compacta of individuals with autism. Postmortem human brain tissue specimens were processed for OXTR receptor autoradiography from four groups: males with autism, females with autism, typically developing (TD) males and TD females. We found that females with autism had significantly lower levels of OXTR than the other groups. To examine potential gene expression differences, we performed <i>in situ</i> hybridization in adjacent slides to visualize and quantify OXTR mRNA as well as mRNA for tyrosine hydroxylase. We found no differences in mRNA levels for either gene across the four groups. These results suggest that a dysregulation in local OXTR protein translation or increased OXTR internalization/recycling may contribute to the differences in social symptoms seen in females with autism.This article is part of the theme issue ‘Interplays between oxytocin and other neuromodulators in shaping complex social behaviours’.
DOI: 10.6084/m9.figshare.20025927.v1
title: Data from Effect of sex and autism spectrum disorder on oxytocin receptor binding and mRNA expression in the dopaminergic pars compacta of the human substantia nigra

description: Oxytocin is an endogenous neuropeptide hormone that influences social behaviour and bonding in mammals. Variations in oxytocin receptor (OXTR) expression may play a role in the social deficits seen in autism spectrum disorder. Previous studies from our laboratory found a dense population of OXTR in the human substantia nigra (SN), a basal ganglia structure in the midbrain that is important in both movement and reward pathways. Here, we explore whether differences in OXTR can be identified in the dopaminergic SN pars compacta of individuals with autism. Postmortem human brain tissue specimens were processed for OXTR receptor autoradiography from four groups: males with autism, females with autism, typically developing (TD) males and TD females. We found that females with autism had significantly lower levels of OXTR than the other groups. To examine potential gene expression differences, we performed <i>in situ</i> hybridization in adjacent slides to visualize and quantify OXTR mRNA as well as mRNA for tyrosine hydroxylase. We found no differences in mRNA levels for either gene across the four groups. These results suggest that a dysregulation in local OXTR protein translation or increased OXTR internalization/recycling may contribute to the differences in social symptoms seen in females with autism.This article is part of the theme issue ‘Interplays between oxytocin and other neuromodulators in shaping complex social behaviours’.
DOI: 10.6084/m9.figshare.20025928.v1
title: Molecular confirmation of twinning in the West Indian Manatee (Trichechus manatus)

description: Abstract: Few twinning events have been recorded in the West Indian manatee (Trichechus manatus, Sirenia: Trichechidae) and no previous published study has provided confirmation of this phenomenon based in molecular tools. Here we investigate a possible case of twinning in an endangered Brazilian population of T. manatus using molecular tools. We analyzed two male neonates found stranded in Ceará State, on the northeastern coast of Brazil. The DNA of both individuals was isolated, and 10 microsatellite loci were amplified and genotyped. Following the identification of the alleles, the probabilities of identity by descent (∆7 and ∆8) and relatedness (rxy) were calculated using estimators that evaluate inbreeding. The two individuals shared most of the alleles, with differences in the genotypes being identified in only two loci. All the estimators identified a level of relatedness compatible with that found between siblings (selfed or outbred), indicating they were dizygotic twins. This is the first confirmed case of fraternal twins in free-ranging West Indian manatees in South America. The recognition of this type of twinning provides elements to improve actions for the rehabilitation of stranded animals and their subsequent release to the environment.