cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.syg8wh
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei)",
 "TaxonKey is Neptis themis"
 ]
}

 The dataset includes 92 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026989-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15315706
title: Carbon emissions along divergent plate boundaries modulate icehouse-greenhouse climates supplementary material

description: This is supplementary material to the journal article,

Mather, B., Müller, D., Dutkiewicz, A., & Zahirovic, S. Carbon emissions along divergent plate boundaries modulate icehouse-greenhouse climates. Communications Earth and Environment. 2025.

It contains:



carbon_fluxes_Muller2022_x264_rev2.mp4 - animation showing the carbon outflux from mid-ocean ridges and volcanic arcs (including slab devolatilization and carbonate platform degassing components), carbon influx along subduction zones, and the location of carbonate platforms through the Phanerozoic.

Zahirovic_etal_2022_mod-ActiveCarbonatePlatforms.gpml - a GPlates gpml file containing the location and active ages of carbonate platforms from 500 Ma to the present day.

plate tectonic stats and carbon fluxes.xlsx - an Excel spreadsheet containing plate tectonic statistics and carbon fluxes presented in the paper.

water_fluxes.xlsx - an Excel spreadsheet containing water fluxes used in the melting rates calculation.

Muller_etal_2022_SE_1Ga_Opt_PlateMotionModel_v1.1.zip - a zip archive containing the Muller et al 2022 plate motion model and associated rasters.


Workflows to constrain the rate of carbonate platform degassing through geological time can be found in the GItHub repository: https://github.com/brmather/carbonate-platform-degassing
DOI: 10.5281/zenodo.17809007
title: Carbon emissions along divergent plate boundaries modulate icehouse-greenhouse climates supplementary material

description: This is supplementary material to the journal article,

Mather, B., Müller, D., Dutkiewicz, A., & Zahirovic, S. Carbon emissions along divergent plate boundaries modulate icehouse-greenhouse climates. Communications Earth and Environment. 2025.

It contains:



carbon_fluxes_Muller2022_x264_rev2.mp4 - animation showing the carbon outflux from mid-ocean ridges and volcanic arcs (including slab devolatilization and carbonate platform degassing components), carbon influx along subduction zones, and the location of carbonate platforms through the Phanerozoic.

Zahirovic_etal_2022_mod-ActiveCarbonatePlatforms.gpml - a GPlates gpml file containing the location and active ages of carbonate platforms from 500 Ma to the present day.

plate tectonic stats and carbon fluxes.xlsx - an Excel spreadsheet containing plate tectonic statistics and carbon fluxes presented in the paper.

water_fluxes.xlsx - an Excel spreadsheet containing water fluxes used in the melting rates calculation.

Muller_etal_2022_SE_1Ga_Opt_PlateMotionModel_v1.1.zip - a zip archive containing the Muller et al 2022 plate motion model and associated rasters.


Workflows to constrain the rate of carbonate platform degassing through geological time can be found in the GItHub repository: https://github.com/brmather/carbonate-platform-degassing
DOI: 10.15468/dl.ks6e3m
title: Occurrence Download

description: A dataset containing 900 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Eurya subintegra, Eurya taronensis, Eurya tetragonoclada, Eurya trichocarpa, Eurya tsaii)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 900 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026990-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3yfh5w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myotis brandtii",
 "Country is one of (China, Chinese Taipei, Hong Kong)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026992-251120083545085/datasets/export for details.
DOI: 10.15468/dl.tr5g85
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cephalophus leucogaster",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 59 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026991-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.waynh8
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cycas diannanensis"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026994-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30781931
title: lmt_neuroethology_for_analysis

description: lmt_neuroethology_for_analysis
DOI: 10.6084/m9.figshare.30781931.v1
title: lmt_neuroethology_for_analysis

description: lmt_neuroethology_for_analysis
DOI: 10.15468/dl.dh63y9
title: Occurrence Download

description: A dataset containing 436 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cephalophus silvicultor",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 436 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026995-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gfh4nj
title: Occurrence Download

description: A dataset containing 6953 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Eurya velutina, Eurya wuliangshanensis, Eurycorymbus cavaleriei, Euryodendron excelsum, Staphylea japonica)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6953 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026996-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bpmk66
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myotis chinensis",
 "Country is one of (China, Chinese Taipei, Hong Kong)"
 ]
}

 The dataset includes 49 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026997-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.axja3k
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cephalophus spadix",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 14 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026998-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.prppu3
title: Occurrence Download

description: A dataset containing 2082 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Eustigma balansae, Eustigma lenticellatum, Eustigma oblongifolium, Tetradium daniellii, Tetradium fraxinifolium)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2082 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026999-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.je9tm8
title: Occurrence Download

description: A dataset containing 112961 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Acer rubrum"
 ]
}

 The dataset includes 112961 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026926-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/6s7q-r919
title: "An Empirical Study on the Security Vulnerabilities of GPTs"

description: "This is the github repository of paper \u300aAn Empirical Study on the Security Vulnerabilities of GPTs\u300b, including the prompts and results mentioned in the paper"
DOI: 10.15468/dl.n8pus6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myotis csorbai",
 "Country is one of (China, Chinese Taipei, Hong Kong)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027000-251120083545085/datasets/export for details.
DOI: 10.15468/dl.yu2jh9
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allodontichthys tamazulae"
 ]
}

 The dataset includes 53 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027001-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17809778
title: Microstructure and wear resistance of AlxCrNbTiV high-entropy alloy coatings prepared by laser cladding on Ti6Al4V
DOI: 10.5281/zenodo.17809777
title: Microstructure and wear resistance of AlxCrNbTiV high-entropy alloy coatings prepared by laser cladding on Ti6Al4V
DOI: 10.15468/dl.3jated
title: Occurrence Download

description: A dataset containing 177 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cephalophus zebra",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 177 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027002-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b2yfbh
title: Occurrence Download

description: A dataset containing 3328 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Melicope pteleifolia, Exbucklandia longipetala, Exbucklandia populnea, Exbucklandia tonkinensis, Burretiodendron obconicum)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3328 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027003-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qveddg
title: Occurrence Download

description: A dataset containing 4475 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ceratotherium simum",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 4475 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027005-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kvvwtk
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allodontichthys zonistius"
 ]
}

 The dataset includes 60 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027006-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25909/28605821.v3
title: BLCM Canine Heartworm POC and MKT

description: Dataset, likelihood functions and R scripts used for the analysis of canine heartworm diagnostic test accuracy
DOI: 10.15468/dl.n7dh3j
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myotis dasycneme",
 "Country is one of (China, Chinese Taipei, Hong Kong)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027007-251120083545085/datasets/export for details.
DOI: 10.15468/dl.ee2hg4
title: Occurrence Download

description: A dataset containing 2975 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Burretiodendron hsienmu, Excoecaria acerifolia, Excoecaria kawakamii, Exochorda racemosa, Fagraea ceilanica)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2975 records from 160 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027008-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17808640
title: BrainArray package archive - ensgprobe

description: This repository contains R packages with "BrainArray" annotations useful for working with Affymetrix gene-expression microarrays. The website was down for an extended period of time, but I found a copy of them on the Internet archive and am re-sharing them here to ensure these valuable resources are not lost.

Original source: http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/25.0.0/ensg.asp

Retrieved from:  https://web.archive.org/web/20240710102334/http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/25.0.0/ensg.asp

Citation: https://academic.oup.com/nar/article/33/20/e175/1082585
DOI: 10.5281/zenodo.17808641
title: BrainArray package archive - ensgprobe

description: This repository contains R packages with "BrainArray" annotations useful for working with Affymetrix gene-expression microarrays. The website was down for an extended period of time, but I found a copy of them on the Internet archive and am re-sharing them here to ensure these valuable resources are not lost.

Original source: http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/25.0.0/ensg.asp

Retrieved from:  https://web.archive.org/web/20240710102334/http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/25.0.0/ensg.asp

Citation: https://academic.oup.com/nar/article/33/20/e175/1082585
DOI: 10.6084/m9.figshare.30782165
title: <b>Engineered </b><b>VPg</b><b> </b><b>saRNA achieves cap-independent,</b><b> </b><b>low-immunogenic and precise</b><b> </b><b>encoding of therapeutic proteins </b><b>in vivo</b><b>.</b>

description: HPLC-MS analysis of nucleosidylated VPg was performed on a total of 2 samples, including unmodified VPg (n=1) and nucleosidylated VPg (n=1) species with 3 technical replicates. Samples were prepared by diluting purified VPg or in vitro nucleotidylation reaction mixtures in LC-MS-grade water, centrifuging at 12,000 ×g to remove particulates, and injecting 1 μl of each preparation onto a CAPCELL CORE AQ S2.7 column (2.1 mm ×150 mm). HPLC separation was carried out on a Waters Alliance 2795 system equipped with a 2996 PDA detector using 10 mmol/L ammonium phosphate as the mobile phase at a flow rate of 400 μl/min, allowing up to 200 μg of VPg per injection without loss of resolution. Fractions corresponding to individual nucleosidylated VPg species were manually collected and stored at -80 °C for subsequent LC-MS analysis. Mass spectrometry was performed on a Waters Q-TOF Micro instrument equipped with a dual electrospray ionization (ESI) lockspray source, acquiring data in positive-ion mode under identical conditions for sample eluates and a VPg reference infused at 2 μl/min. Source parameters included a source temperature of 120 °C, desolvation temperature of 300 °C, and cone voltages of 25 V (reference) and 20 V (sample). Raw spectra were processed and deconvoluted using MassLynx 4.1 with the MaxEnt1 Transform algorithm to obtain zero-charge intact molecular masses. Because nucleotidylated VPg yields intact mass shifts rather than proteolytic peptides, peptide-database searches, missed-cleavage criteria, FDR filtering and peptide-scoring parameters were not applicable. Instead, VPg nucleosidylation states were identified by theoretical-to-observed mass matching, with VPg-pU confirmed by an intact mass increase of 303.17 Da corresponding to uridylylation at Tyr30(Y30). All LC-MS analyses were repeated independently at least 3 times to ensure reproducibility.<br>
DOI: 10.6084/m9.figshare.30782165.v1
title: <b>Engineered </b><b>VPg</b><b> </b><b>saRNA achieves cap-independent,</b><b> </b><b>low-immunogenic and precise</b><b> </b><b>encoding of therapeutic proteins </b><b>in vivo</b><b>.</b>

description: HPLC-MS analysis of nucleosidylated VPg was performed on a total of 2 samples, including unmodified VPg (n=1) and nucleosidylated VPg (n=1) species with 3 technical replicates. Samples were prepared by diluting purified VPg or in vitro nucleotidylation reaction mixtures in LC-MS-grade water, centrifuging at 12,000 ×g to remove particulates, and injecting 1 μl of each preparation onto a CAPCELL CORE AQ S2.7 column (2.1 mm ×150 mm). HPLC separation was carried out on a Waters Alliance 2795 system equipped with a 2996 PDA detector using 10 mmol/L ammonium phosphate as the mobile phase at a flow rate of 400 μl/min, allowing up to 200 μg of VPg per injection without loss of resolution. Fractions corresponding to individual nucleosidylated VPg species were manually collected and stored at -80 °C for subsequent LC-MS analysis. Mass spectrometry was performed on a Waters Q-TOF Micro instrument equipped with a dual electrospray ionization (ESI) lockspray source, acquiring data in positive-ion mode under identical conditions for sample eluates and a VPg reference infused at 2 μl/min. Source parameters included a source temperature of 120 °C, desolvation temperature of 300 °C, and cone voltages of 25 V (reference) and 20 V (sample). Raw spectra were processed and deconvoluted using MassLynx 4.1 with the MaxEnt1 Transform algorithm to obtain zero-charge intact molecular masses. Because nucleotidylated VPg yields intact mass shifts rather than proteolytic peptides, peptide-database searches, missed-cleavage criteria, FDR filtering and peptide-scoring parameters were not applicable. Instead, VPg nucleosidylation states were identified by theoretical-to-observed mass matching, with VPg-pU confirmed by an intact mass increase of 303.17 Da corresponding to uridylylation at Tyr30(Y30). All LC-MS analyses were repeated independently at least 3 times to ensure reproducibility.<br>
DOI: 10.15468/dl.bv8bvu
title: Occurrence Download

description: A dataset containing 186 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cercocebus atys",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 186 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027009-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.93pbqa
title: Occurrence Download

description: A dataset containing 2112160 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to 29.085278",
 "DecimalLatitude is less than or equal to 34.085278",
 "DecimalLongitude is greater than or equal to -120.0",
 "DecimalLongitude is less than or equal to -115.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 2112160 records from 356 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026983-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ctjst3
title: Occurrence Download

description: A dataset containing 2166 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Fagus engleriana, Fagus hayatae, Fagus sinensis, Fagus lucida, Borinda acuticontracta)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2166 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027011-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ubn3vg
title: Occurrence Download

description: A dataset containing 518 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alloophorus robustus"
 ]
}

 The dataset includes 518 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027010-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qyukek
title: Occurrence Download

description: A dataset containing 179 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "DatasetKey is Digitalización y sistematización de las colecciones biológicas del INECOL (Herbario)",
 "OccurrenceStatus is Present",
 "TaxonKey is Pitcairnia"
 ]
}

 The dataset includes 179 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027012-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y834p9
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myotis davidii",
 "Country is one of (China, Chinese Taipei, Hong Kong)"
 ]
}

 The dataset includes 57 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027013-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jkh8qe
title: Occurrence Download

description: A dataset containing 1004051 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is 0a80feca-b411-428a-a34e-c5c2fa07cdba",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 1004051 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027004-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mpxtdh
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cercocebus chrysogaster",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027015-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.