cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.nnxvek
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium retusum",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011739-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/84ntea
title: 18S Monterey Bay Time Series: an eDNA data set from Monterey Bay, California, including years 2006, 2013 - 2016

description: These data are from marine filtered seawater samples collected at a nearshore station in Monterey Bay, CA. They have undergone metabarcoding for the 18S V9 region. A selection of samples from this plate were included in the publication "Environmental DNA reveals seasonal shifts and potential interactions in a marine community" (Djurhuus et al., 2020). Samples were collected by CTD rosette and filtered by a peristaltic pump system.Illumina MiSeq metabarcoding data was processed in the following steps: (1) primer sequences were removed through atropos (Didion et al., 2017), (2) reads were denoised, ASV sequences inferred, paired reads merged and chimeras removed through Dada2 (Callahan et al., 2016), (3) taxonomic ranks were assigned through blastn searches to NCBI GenBank's non-redundant nucleotide database (nt) with hits filtered by lowest common ancestor algorithm within MEGAN6 (Huson et al., 2016). Furthermore, post-MEGAN6 filtering was performed to ensure only contigs with a hit of ≥97% sequence identity were annotated to the species level and only contigs with a hit of ≥95% sequence identity were annotated to the genus level. Annotations were elevated to the next highest taxonomic level for contigs that failed these conditions.Data are presented in two comma-separated values files: occurrence.csv, and DNADerivedData.csv. The former contains the taxonomic identification of each ASV observed and its number of reads, in addition to relevant metadata including the location the water sample was taken, references for the identification procedure, and links to archived sequences. The latter contains the DNA sequence of each ASV observed, in addition to relevant metadata including primer information and links to detailed field and laboratory methods. This data set was transformed from its native format into a table structure using Darwin Core and DNA Derived Data Extension term names as column names.References:Djurhuus, A, Closek, CJ, Kelly, RP et al. (2020). Environmental DNA reveals seasonal shifts and potential interactions in a marine community. Nat Commun 11, 254. https://doi.org/10.1038/s41467-019-14105-1Didion JP, Martin M, Collins FS. (2017) Atropos: specific, sensitive, and speedy trimming of sequencing reads. PeerJ 5:e3720 https://doi.org/10.7717/peerj.3720Callahan, B., McMurdie, P., Rosen, M. et al. (2016) DADA2: High-resolution sample inference from Illumina amplicon data. Nat Methods 13, 581–583 . https://doi.org/10.1038/nmeth.3869Huson DH, Beier S, Flade I, Górska A, El-Hadidi M, Mitra S, Ruscheweyh HJ, Tappu R. (2016) MEGAN community edition-interactive exploration and analysis of large-scale microbiome sequencing data. PLoS computational biology. Jun 21;12(6):e1004957.
DOI: 10.15468/rhyjsq
title: freshwater sediment metagenome Metagenome

description: To investigate the influence of nitrate on soil microbial communities.
DOI: 10.15468/sduabw
title: Metagenomes of Sediments from Red Sea Atlantis II and Discovery Deep Brine Pools

description: The study focuses on Atlantis II and Discovery deeps brine pool sites, specifically sub-seafloor sediment.
DOI: 10.15468/wrde0c
title: Microbial indicators of anthropogenic marine pollution identified by 16S and 18S metagenomic library analysis

description: Microbial indicators of anthropogenic marine pollution identified by 16S and 18S metagenomic library analysis. Research supported by FP7 European Project Winning Applications of nanoTEchnology for Resolutive hydropurification WATER (Grant Agreement n 316082).
DOI: 10.15468/dl.qqpbr7
title: Occurrence Download

description: A dataset containing 26739 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "HasCoordinate is true",
 "Year is 1932"
 ]
}

 The dataset includes 26739 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011729-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/bwwnal
title: Long distance electron transfer by cable bacteria in aquifer sediments

description: Investigation of BTEX contaminated groundwater sediments for the abundance of cable bacteria which could enhance biodegradation by long distance electron transfer at the plume fringes
DOI: 10.15468/ontesf
title: Marine sample from an Antarctic Bay Raw sequence reads

description: Describe microbial diversity
DOI: 10.15468/dl.ta9u6x
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Aloe plicatilis)"
 ]
}

 The dataset includes 32 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011745-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/wuaomd
title: Marine metagenome ICM_CNE

description: Temporal Dynamics of Coastal Bacterioplankton
DOI: 10.15468/dl.z7rhqg
title: Occurrence Download

description: A dataset containing 4128 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is BRA",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Amaryllidaceae",
 "Year 1753-2023"
 ]
}

 The dataset includes 4128 records from 156 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094069-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2tk3tz
title: Occurrence Download

description: A dataset containing 880 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is BRA",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aptandraceae",
 "Year 1753-2023"
 ]
}

 The dataset includes 880 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095781-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fvazqb
title: Occurrence Download

description: A dataset containing 265 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is BRA",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Apodanthaceae",
 "Year 1753-2023"
 ]
}

 The dataset includes 265 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095755-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2mewwu
title: Occurrence Download

description: A dataset containing 1085 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is BRA",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cannaceae",
 "Year 1753-2023"
 ]
}

 The dataset includes 1085 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0100137-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ssm99
title: Occurrence Download

description: A dataset containing 6237 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is BRA",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cannabaceae",
 "Year 1753-2023"
 ]
}

 The dataset includes 6237 records from 171 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0100130-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.evds78
title: Occurrence Download

description: A dataset containing 34646 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is BRA",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Acanthaceae",
 "Year 1753-2023"
 ]
}

 The dataset includes 34646 records from 206 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089893-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vuqkbn
title: Occurrence Download

description: A dataset containing 9704 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is BRA",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dioscoreaceae",
 "Year 1753-2023"
 ]
}

 The dataset includes 9704 records from 158 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104214-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/vna2wd
title: Transitional subsurface-to-surface microbial diversity in a terrestrial serpentinizing seep (Manleluag, Pangasinan, the Philippines)

description: In the Zambales ophiolite range, terrestrial fluid seeps host diverse microbial communities, which may be supported by hydrogen gas generated via serpentinization. Samples were collected at the source and along the outflow channel to determine subsurface microbial community response to surface exposure. These data provide context for future serpentinizing seep ecosystem studies, particularly in tropical biomes.
DOI: 10.15468/dl.4za5h6
title: Occurrence Download

description: A dataset containing 1987 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is BRA",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Achariaceae",
 "Year 1753-2023"
 ]
}

 The dataset includes 1987 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090897-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g3wjqx
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is BRA",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Actinidiaceae",
 "Year 1753-2023"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0091212-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n3vbwm
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is BRA",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Achatocarpaceae",
 "Year 1753-2023"
 ]
}

 The dataset includes 102 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0091076-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9953x5
title: Occurrence Download

description: A dataset containing 507 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is BRA",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aizoaceae",
 "Year 1753-2023"
 ]
}

 The dataset includes 507 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0091305-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ecjbzu
title: Occurrence Download

description: A dataset containing 4582 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is BRA",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Alismataceae",
 "Year 1753-2023"
 ]
}

 The dataset includes 4582 records from 162 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0091472-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t3chx3
title: Occurrence Download

description: A dataset containing 2403 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is BRA",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Alstroemeriaceae",
 "Year 1753-2023"
 ]
}

 The dataset includes 2403 records from 137 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093693-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dz4pdc
title: Occurrence Download

description: A dataset containing 21174 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is BRA",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Amaranthaceae",
 "Year 1753-2023"
 ]
}

 The dataset includes 21174 records from 188 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093894-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gf9wib
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Crotalus ornatus Hallowell, 1854"
 ]
}

 The dataset includes 39 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008301-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mgrt69
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Drymocallis hansenii (Greene) Rydb."
 ]
}

 The dataset includes 144 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0157266-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wd58b7
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Encyclia gravida (Lindl.) Schltr."
 ]
}

 The dataset includes 56 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0157267-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ai65cm
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Agkistrodon contortrix (Linnaeus, 1766)"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008297-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c5q7hj
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chelidonium majus Lour., 1790)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Observation, Specimen)",
 "Year is greater than 1945"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0278823-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qjntke
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chrysanthemum maximum Ramond)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Observation, Specimen)",
 "Year is greater than 1945"
 ]
}

 The dataset includes 19 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0278849-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4psjmv
title: Occurrence Download

description: A dataset containing 161100 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epilobium ciliatum Raf."
 ]
}

 The dataset includes 161100 records from 542 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0288234-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fgujss
title: Occurrence Download

description: A dataset containing 83544 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thaumetopoea pityocampa (Denis & Schiffermüller), 1776"
 ]
}

 The dataset includes 83544 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008303-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jyt3le
title: Occurrence Download

description: A dataset containing 503240 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-121.54782 38.63202,-121.09852 38.63184,-121.10267 38.91368,-121.22383 38.91316,-121.39268 38.91199,-121.55129 38.91364,-121.54782 38.63202))",
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 503240 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008298-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j28p6v
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bryum cryophilum",
 "MediaType is Image",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000642-210914110416597/datasets/export for details.
DOI: 10.15468/dl.dmt6dc
title: Occurrence Download

description: A dataset containing 8426087 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8426087 records from 2912 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066940-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wa8xa6
title: Occurrence Download

description: A dataset containing 43172 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation)",
 "OccurrenceStatus is Present",
 "TaxonKey is Phoeniconaias minor (É.Geoffroy Saint-Hilaire, 1798)"
 ]
}

 The dataset includes 43172 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030309-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ta1cmx
title: Occurrence Download

description: A dataset containing 2717 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "Month is greater than or equal to January",
 "Country is United Arab Emirates",
 "TaxonKey is Apodiformes"
 ]
}

 The dataset includes 2717 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008440-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.38pnm4
title: Occurrence Download

description: A dataset containing 4270 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Artemisia gmelinii Weber ex Stechm."
 ]
}

 The dataset includes 4270 records from 146 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069581-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dqzjam
title: Occurrence Download

description: A dataset containing 730 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ilex wilsonii Loes."
 ]
}

 The dataset includes 730 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030235-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.l4ea3v
title: Occurrence Download

description: A dataset containing 5553527 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Geometry POLYGON((-131.75 6.46,-131.75 38.45,-76.38 38.45,-76.38 6.46,-131.75 6.46))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5553527 records from 908 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008440-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.