cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11480475
title: MOESM6 of LMAP_S: Lightweight Multigene Alignment and Phylogeny eStimation

description: Additional file 6. LMAP_S case study analyses of the Cephalopoda mitochondrial genes. (File 1): Description of experiments, results and discussion. (File 2): LMAP_S and TreeCmp command-lines with additional benchmarking. (File 3): Tables with LMAP_S consensus histogram reports from CephaResults. (File 4): Tables with LMAP_S consensus histogram reports from CephaResultsARC. (File 5): Figures showing side-by-side consensus strategies charts comparisons. (File 6): Tables with results of the topological comparisons. (File 7): Final and original LMAP_S results (PTs and Reports). (File 8): Bash scripts used to generate the TreeCmp input files.
DOI: 10.6084/m9.figshare.11480475.v1
title: MOESM6 of LMAP_S: Lightweight Multigene Alignment and Phylogeny eStimation

description: Additional file 6. LMAP_S case study analyses of the Cephalopoda mitochondrial genes. (File 1): Description of experiments, results and discussion. (File 2): LMAP_S and TreeCmp command-lines with additional benchmarking. (File 3): Tables with LMAP_S consensus histogram reports from CephaResults. (File 4): Tables with LMAP_S consensus histogram reports from CephaResultsARC. (File 5): Figures showing side-by-side consensus strategies charts comparisons. (File 6): Tables with results of the topological comparisons. (File 7): Final and original LMAP_S results (PTs and Reports). (File 8): Bash scripts used to generate the TreeCmp input files.
DOI: 10.6084/m9.figshare.11480463
title: MOESM5 of LMAP_S: Lightweight Multigene Alignment and Phylogeny eStimation

description: Additional file 5: Resulting CSV reports compiled from LMAP_S execution of the included example dataset. (Table S1): Stage 3 (AOD) outlier detection report. (Table S2): Stage 4 (ARC) TrimAl “compareset” report. (Table S3): Stage 6 (PCC) CONSEL report. (Table S4): Stage 6 (PCC) TreeCmp MP reports. (Table S5): Stage 6 (PCC) TreeCmp R-F_C reports. (Table S6): Stage 6 (PCC) consensus reports. (Table S7): Stage 6 (PCC) consensus brief reports. (Table S8): Stage 6 (PCC) consensus histogram reports.
DOI: 10.6084/m9.figshare.11480463.v1
title: MOESM5 of LMAP_S: Lightweight Multigene Alignment and Phylogeny eStimation

description: Additional file 5: Resulting CSV reports compiled from LMAP_S execution of the included example dataset. (Table S1): Stage 3 (AOD) outlier detection report. (Table S2): Stage 4 (ARC) TrimAl “compareset” report. (Table S3): Stage 6 (PCC) CONSEL report. (Table S4): Stage 6 (PCC) TreeCmp MP reports. (Table S5): Stage 6 (PCC) TreeCmp R-F_C reports. (Table S6): Stage 6 (PCC) consensus reports. (Table S7): Stage 6 (PCC) consensus brief reports. (Table S8): Stage 6 (PCC) consensus histogram reports.
DOI: 10.6084/m9.figshare.11480460
title: MOESM1 of Morphology and evolutionary significance of phosphatic otoliths within the inner ears of cartilaginous fishes (Chondrichthyes)

description: Additional file 1. Original excel dataset for this study, based on CT scans and dissections.
DOI: 10.6084/m9.figshare.11480460.v1
title: MOESM1 of Morphology and evolutionary significance of phosphatic otoliths within the inner ears of cartilaginous fishes (Chondrichthyes)

description: Additional file 1. Original excel dataset for this study, based on CT scans and dissections.
DOI: 10.6084/m9.figshare.11480421
title: MOESM7 of Genome sequencing of Mycobacterium pinnipedii strains: genetic characterization and evidence of superinfection in a South American sea lion (Otaria flavescens)

description: Additional file 7: Table S6. Unique variants found in strains of Mycobacterium pinnipedii compared to other strains of the Mycobacterium tuberculosis complex.
DOI: 10.6084/m9.figshare.11480415
title: MOESM6 of Genome sequencing of Mycobacterium pinnipedii strains: genetic characterization and evidence of superinfection in a South American sea lion (Otaria flavescens)

description: Additional file 6: Table S5. Large sequence polimorphisms (LSP) among Mycobacterium pinnipedii strains - candidates that need further experimental validation.
DOI: 10.6084/m9.figshare.11480421.v1
title: MOESM7 of Genome sequencing of Mycobacterium pinnipedii strains: genetic characterization and evidence of superinfection in a South American sea lion (Otaria flavescens)

description: Additional file 7: Table S6. Unique variants found in strains of Mycobacterium pinnipedii compared to other strains of the Mycobacterium tuberculosis complex.
DOI: 10.6084/m9.figshare.11480415.v1
title: MOESM6 of Genome sequencing of Mycobacterium pinnipedii strains: genetic characterization and evidence of superinfection in a South American sea lion (Otaria flavescens)

description: Additional file 6: Table S5. Large sequence polimorphisms (LSP) among Mycobacterium pinnipedii strains - candidates that need further experimental validation.
DOI: 10.6084/m9.figshare.11480409
title: MOESM5 of Genome sequencing of Mycobacterium pinnipedii strains: genetic characterization and evidence of superinfection in a South American sea lion (Otaria flavescens)

description: Additional file 5 Table S4. Clusters of orthologous proteins specific of Mycobacterium pinnipedii strains MP1, MP2 and ATCC BAA-688.
DOI: 10.6084/m9.figshare.11480409.v1
title: MOESM5 of Genome sequencing of Mycobacterium pinnipedii strains: genetic characterization and evidence of superinfection in a South American sea lion (Otaria flavescens)

description: Additional file 5 Table S4. Clusters of orthologous proteins specific of Mycobacterium pinnipedii strains MP1, MP2 and ATCC BAA-688.
DOI: 10.6084/m9.figshare.11480403
title: MOESM4 of Genome sequencing of Mycobacterium pinnipedii strains: genetic characterization and evidence of superinfection in a South American sea lion (Otaria flavescens)

description: Additional file 4: Table S3. Number of clusters of orthologous proteins between strains of Mycobacterium pinnipedii.
DOI: 10.6084/m9.figshare.11480403.v1
title: MOESM4 of Genome sequencing of Mycobacterium pinnipedii strains: genetic characterization and evidence of superinfection in a South American sea lion (Otaria flavescens)

description: Additional file 4: Table S3. Number of clusters of orthologous proteins between strains of Mycobacterium pinnipedii.
DOI: 10.6084/m9.figshare.11480397
title: MOESM3 of Genome sequencing of Mycobacterium pinnipedii strains: genetic characterization and evidence of superinfection in a South American sea lion (Otaria flavescens)

description: Additional file 3: Table S2. Clusters of orthologous proteins between strains of Mycobacterium pinnipedii.
DOI: 10.6084/m9.figshare.11480397.v1
title: MOESM3 of Genome sequencing of Mycobacterium pinnipedii strains: genetic characterization and evidence of superinfection in a South American sea lion (Otaria flavescens)

description: Additional file 3: Table S2. Clusters of orthologous proteins between strains of Mycobacterium pinnipedii.
DOI: 10.6084/m9.figshare.11480385
title: MOESM1 of Genome sequencing of Mycobacterium pinnipedii strains: genetic characterization and evidence of superinfection in a South American sea lion (Otaria flavescens)

description: Additional file 1: Table S1. Single nucleotide polymorphisms (SNPs) and indels that differentiate Mycobacterium pinnipedii strains MP1 and MP2.
DOI: 10.6084/m9.figshare.11480385.v1
title: MOESM1 of Genome sequencing of Mycobacterium pinnipedii strains: genetic characterization and evidence of superinfection in a South American sea lion (Otaria flavescens)

description: Additional file 1: Table S1. Single nucleotide polymorphisms (SNPs) and indels that differentiate Mycobacterium pinnipedii strains MP1 and MP2.
DOI: 10.6084/m9.figshare.11480355
title: MOESM3 of High-level integration of murine intestinal transcriptomics data highlights the importance of the complement system in mucosal homeostasis

description: Additional file 3: Table S3. Differential expression of genes in “Regulation of Complement Cascade” pathway. This table contains the differential gene expression values of 24 genes in 17 experimental conditions. The differential values were obtained with a T test of the experimental condition vs the control in that experiment.
DOI: 10.6084/m9.figshare.11480352
title: MOESM2 of High-level integration of murine intestinal transcriptomics data highlights the importance of the complement system in mucosal homeostasis

description: Additional file 2: Table S2. Significant pathways with p-values in each experimental condition both centralities. This table has the p-values of all the significant leaf pathways in the 37 experimental conditions in both the in-reach and out-reach centrality calculations. If the p-value of the pathway was above the threshold of 0.01 an empty space is shown in the table. The p-values of at least one of the centrality calculations have to be lower than the threshold.
DOI: 10.6084/m9.figshare.11480355.v1
title: MOESM3 of High-level integration of murine intestinal transcriptomics data highlights the importance of the complement system in mucosal homeostasis

description: Additional file 3: Table S3. Differential expression of genes in “Regulation of Complement Cascade” pathway. This table contains the differential gene expression values of 24 genes in 17 experimental conditions. The differential values were obtained with a T test of the experimental condition vs the control in that experiment.
DOI: 10.6084/m9.figshare.11480349
title: MOESM1 of High-level integration of murine intestinal transcriptomics data highlights the importance of the complement system in mucosal homeostasis

description: Additional file 1: Table S1. Description of the 37 conditions. This table describes the abbreviated names of experimental conditions as used in the paper and the control conditions in each of the experiments.
DOI: 10.6084/m9.figshare.11480352.v1
title: MOESM2 of High-level integration of murine intestinal transcriptomics data highlights the importance of the complement system in mucosal homeostasis

description: Additional file 2: Table S2. Significant pathways with p-values in each experimental condition both centralities. This table has the p-values of all the significant leaf pathways in the 37 experimental conditions in both the in-reach and out-reach centrality calculations. If the p-value of the pathway was above the threshold of 0.01 an empty space is shown in the table. The p-values of at least one of the centrality calculations have to be lower than the threshold.
DOI: 10.6084/m9.figshare.11480349.v1
title: MOESM1 of High-level integration of murine intestinal transcriptomics data highlights the importance of the complement system in mucosal homeostasis

description: Additional file 1: Table S1. Description of the 37 conditions. This table describes the abbreviated names of experimental conditions as used in the paper and the control conditions in each of the experiments.
DOI: 10.6084/m9.figshare.11480229
title: MOESM8 of Feasibility study of using high-throughput drug sensitivity testing to target recurrent glioblastoma stem cells for individualized treatment

description: Additional file 8. Sensitivity to TMZ and MGMT promoter methylation status.
DOI: 10.6084/m9.figshare.11480229.v1
title: MOESM8 of Feasibility study of using high-throughput drug sensitivity testing to target recurrent glioblastoma stem cells for individualized treatment

description: Additional file 8. Sensitivity to TMZ and MGMT promoter methylation status.
DOI: 10.6084/m9.figshare.11480214
title: MOESM5 of Feasibility study of using high-throughput drug sensitivity testing to target recurrent glioblastoma stem cells for individualized treatment

description: Additional file 5. Drug sensitivity scores. All drug sensitivity scores for recGSCs generated in the study.
DOI: 10.6084/m9.figshare.11480214.v1
title: MOESM5 of Feasibility study of using high-throughput drug sensitivity testing to target recurrent glioblastoma stem cells for individualized treatment

description: Additional file 5. Drug sensitivity scores. All drug sensitivity scores for recGSCs generated in the study.
DOI: 10.6084/m9.figshare.11480196
title: MOESM2 of Feasibility study of using high-throughput drug sensitivity testing to target recurrent glioblastoma stem cells for individualized treatment

description: Additional file 2. Drug collection. The drug collection used in this study.
DOI: 10.6084/m9.figshare.11480196.v1
title: MOESM2 of Feasibility study of using high-throughput drug sensitivity testing to target recurrent glioblastoma stem cells for individualized treatment

description: Additional file 2. Drug collection. The drug collection used in this study.
DOI: 10.6084/m9.figshare.11480187
title: MOESM1 of Feasibility study of using high-throughput drug sensitivity testing to target recurrent glioblastoma stem cells for individualized treatment

description: Additional file 1. Patient characteristics. Patient characteristics of which all patient-derived recGSC cultures were obtained.
DOI: 10.6084/m9.figshare.11480187.v1
title: MOESM1 of Feasibility study of using high-throughput drug sensitivity testing to target recurrent glioblastoma stem cells for individualized treatment

description: Additional file 1. Patient characteristics. Patient characteristics of which all patient-derived recGSC cultures were obtained.
DOI: 10.6084/m9.figshare.11480127
title: MOESM2 of Can selenium deficiency in Malawi be alleviated through consumption of agro-biofortified maize flour? Study protocol for a randomised, double-blind, controlled trial

description: Additional file 2. a. Participant Information Sheet for adult women (English). b. Participant Information Sheet for adult women (Chichewa). c. Informed consent form for adult women (English). d. Informed consent form for adult women (Chichewa). e. Participant Information Sheet for the parent or guardian of schoolaged children (English). f. Participant Information Sheet for the parent or guardian of schoolaged children (Chichewa). g. Assent form for children (English). h. Assent form for children (Chichewa). i. Sample participant and maize flour recipient ID cards. A = Adult, C = Child, R = Recipient. Recipients are households in the study area but not participating in the trial. Recipient and Adult ID cards will be used at flour distribution points to ensure the correct allocation of flour for non-participant and participant households, respectively.
DOI: 10.6084/m9.figshare.11480127.v1
title: MOESM2 of Can selenium deficiency in Malawi be alleviated through consumption of agro-biofortified maize flour? Study protocol for a randomised, double-blind, controlled trial

description: Additional file 2. a. Participant Information Sheet for adult women (English). b. Participant Information Sheet for adult women (Chichewa). c. Informed consent form for adult women (English). d. Informed consent form for adult women (Chichewa). e. Participant Information Sheet for the parent or guardian of schoolaged children (English). f. Participant Information Sheet for the parent or guardian of schoolaged children (Chichewa). g. Assent form for children (English). h. Assent form for children (Chichewa). i. Sample participant and maize flour recipient ID cards. A = Adult, C = Child, R = Recipient. Recipients are households in the study area but not participating in the trial. Recipient and Adult ID cards will be used at flour distribution points to ensure the correct allocation of flour for non-participant and participant households, respectively.
DOI: 10.6084/m9.figshare.11480109
title: MOESM2 of Proximal femoral head transcriptome reveals novel candidate genes related to epiphysiolysis in broiler chickens

description: Additional file 2. An excel file with the expressed and DE genes between normal and FHS-affected broilers with 35 days of age.
DOI: 10.6084/m9.figshare.11480109.v1
title: MOESM2 of Proximal femoral head transcriptome reveals novel candidate genes related to epiphysiolysis in broiler chickens

description: Additional file 2. An excel file with the expressed and DE genes between normal and FHS-affected broilers with 35 days of age.
DOI: 10.6084/m9.figshare.11480094
title: MOESM2 of Time and energy costs of different foraging choices in an avian generalist species

description: Additional file 2. Contains the complete R script necessary to (1) derive the datasets used for all statistical analyses in the present study from the GPS positions and accelerometer data, (2) run the analyses and (3) produce the figures.
DOI: 10.6084/m9.figshare.11480094.v1
title: MOESM2 of Time and energy costs of different foraging choices in an avian generalist species

description: Additional file 2. Contains the complete R script necessary to (1) derive the datasets used for all statistical analyses in the present study from the GPS positions and accelerometer data, (2) run the analyses and (3) produce the figures.
DOI: 10.6084/m9.figshare.11480040
title: MOESM5 of SMaSH: Sample matching using SNPs in humans

description: Additional file 5 This excel spreadsheet lists metadata for the samples from the lung squamous cell carcinoma data set used in the evaluation of SMaSH.
DOI: 10.6084/m9.figshare.11480040.v1
title: MOESM5 of SMaSH: Sample matching using SNPs in humans

description: Additional file 5 This excel spreadsheet lists metadata for the samples from the lung squamous cell carcinoma data set used in the evaluation of SMaSH.
DOI: 10.6084/m9.figshare.11480031
title: MOESM4 of SMaSH: Sample matching using SNPs in humans

description: Additional file 4 This excel spreadsheet lists the 6059 SNPs used by SMaSH for identity assessment.
DOI: 10.6084/m9.figshare.11480031.v1
title: MOESM4 of SMaSH: Sample matching using SNPs in humans

description: Additional file 4 This excel spreadsheet lists the 6059 SNPs used by SMaSH for identity assessment.
DOI: 10.6084/m9.figshare.11480022
title: MOESM3 of SMaSH: Sample matching using SNPs in humans

description: Additional file 3 This excel spreadsheet contains sample by sample quality control parameters of the lower quality RNASeq data set used in the evaluation of SMaSH.
DOI: 10.6084/m9.figshare.11480022.v1
title: MOESM3 of SMaSH: Sample matching using SNPs in humans

description: Additional file 3 This excel spreadsheet contains sample by sample quality control parameters of the lower quality RNASeq data set used in the evaluation of SMaSH.
DOI: 10.6084/m9.figshare.11480004
title: MOESM1 of SMaSH: Sample matching using SNPs in humans

description: Additional file 1 This excel spreadsheet includes p-values for every pairwise comparison of two samples used in the evaluation of SMaSH.
DOI: 10.6084/m9.figshare.11480004.v1
title: MOESM1 of SMaSH: Sample matching using SNPs in humans

description: Additional file 1 This excel spreadsheet includes p-values for every pairwise comparison of two samples used in the evaluation of SMaSH.
DOI: 10.6084/m9.figshare.11479959
title: MOESM1 of An insight to HTLV-1-associated myelopathy/tropical spastic paraparesis (HAM/TSP) pathogenesis; evidence from high-throughput data integration and meta-analysis

description: Additional file 1: Table S1. List of the identified DEGs in each group.
DOI: 10.6084/m9.figshare.11479959.v1
title: MOESM1 of An insight to HTLV-1-associated myelopathy/tropical spastic paraparesis (HAM/TSP) pathogenesis; evidence from high-throughput data integration and meta-analysis

description: Additional file 1: Table S1. List of the identified DEGs in each group.
DOI: 10.6084/m9.figshare.11479920
title: MOESM9 of Functional mutation allele mining of plant architecture and yield-related agronomic traits and characterization of their effects in wheat

description: Additional file 9: Table S6. Flag leaf angle of mutant lines carrying mutant alleles of candidate SNPs.
DOI: 10.6084/m9.figshare.11479917
title: MOESM8 of Functional mutation allele mining of plant architecture and yield-related agronomic traits and characterization of their effects in wheat

description: Additional file 8: Table S5. Effective tiller number of mutant lines carrying mutant alleles of candidate SNPs.
DOI: 10.6084/m9.figshare.11479920.v1
title: MOESM9 of Functional mutation allele mining of plant architecture and yield-related agronomic traits and characterization of their effects in wheat

description: Additional file 9: Table S6. Flag leaf angle of mutant lines carrying mutant alleles of candidate SNPs.
DOI: 10.6084/m9.figshare.11479911
title: MOESM6 of Functional mutation allele mining of plant architecture and yield-related agronomic traits and characterization of their effects in wheat

description: Additional file 6: Table S3. Thousand grain weight of mutant lines carrying mutant alleles of candidate SNPs.
DOI: 10.6084/m9.figshare.11479914
title: MOESM7 of Functional mutation allele mining of plant architecture and yield-related agronomic traits and characterization of their effects in wheat

description: Additional file 7: Table S4. Maximum tiller number of mutant lines carrying mutant alleles of candidate SNPs.
DOI: 10.6084/m9.figshare.11479917.v1
title: MOESM8 of Functional mutation allele mining of plant architecture and yield-related agronomic traits and characterization of their effects in wheat

description: Additional file 8: Table S5. Effective tiller number of mutant lines carrying mutant alleles of candidate SNPs.
DOI: 10.6084/m9.figshare.11479911.v1
title: MOESM6 of Functional mutation allele mining of plant architecture and yield-related agronomic traits and characterization of their effects in wheat

description: Additional file 6: Table S3. Thousand grain weight of mutant lines carrying mutant alleles of candidate SNPs.
DOI: 10.6084/m9.figshare.11479914.v1
title: MOESM7 of Functional mutation allele mining of plant architecture and yield-related agronomic traits and characterization of their effects in wheat

description: Additional file 7: Table S4. Maximum tiller number of mutant lines carrying mutant alleles of candidate SNPs.
DOI: 10.6084/m9.figshare.11479908
title: MOESM5 of Functional mutation allele mining of plant architecture and yield-related agronomic traits and characterization of their effects in wheat

description: Additional file 5: Table S2. Plant height of mutant lines carrying mutation alleles of candidate SNPs.
DOI: 10.6084/m9.figshare.11479908.v1
title: MOESM5 of Functional mutation allele mining of plant architecture and yield-related agronomic traits and characterization of their effects in wheat

description: Additional file 5: Table S2. Plant height of mutant lines carrying mutation alleles of candidate SNPs.
DOI: 10.6084/m9.figshare.11479899
title: MOESM2 of Functional mutation allele mining of plant architecture and yield-related agronomic traits and characterization of their effects in wheat

description: Additional file 2: Table S1. Significantly associated SNPs in each environment or across environments identified by genome wide association analysis.
DOI: 10.6084/m9.figshare.11479899.v1
title: MOESM2 of Functional mutation allele mining of plant architecture and yield-related agronomic traits and characterization of their effects in wheat

description: Additional file 2: Table S1. Significantly associated SNPs in each environment or across environments identified by genome wide association analysis.
DOI: 10.6084/m9.figshare.11479893
title: MOESM8 of Chicken adaptive response to low energy diet: main role of the hypothalamic lipid metabolism revealed by a phenotypic and multi-tissue transcriptomic approach

description: Additional file 8. Composition of the diets.
DOI: 10.6084/m9.figshare.11479893.v1
title: MOESM8 of Chicken adaptive response to low energy diet: main role of the hypothalamic lipid metabolism revealed by a phenotypic and multi-tissue transcriptomic approach

description: Additional file 8. Composition of the diets.
DOI: 10.6084/m9.figshare.11479887
title: MOESM12 of Functional mutation allele mining of plant architecture and yield-related agronomic traits and characterization of their effects in wheat

description: Additional file 12: Table S9. The alleles of WT and mutant lines with 67,402 SNP markers.