cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/39t8bbw7jp.1
title: Wind tracking results for visible (513 nm) images obtained by the Venus monitoring camera

description: The dataset for publication "Winds from visible (513 nm) images obtained by the Venus Monitoring Camera onboard Venus express" by Khatuntsev et al. (2021). It includes ASCII file VMC_VI2_CMV.dat, which contains wind tracking results for visible (513 nm) images obtained by the Venus monitoring camera onboard Venus Express during the period 2007/07/01-2013/01/29. Each record in the file contain the following information: 1) Orbit number, 2) Longitude of the vector origin, 3) Latitude of the vector origin, 4) Local time for the vector origin, 5) Zonal speed (m/s), 6) Meridional speed (m/s), 7) Julian date.
DOI: 10.17632/8xy6vt422z.2
title: Source code for Microstructure-based finite-difference analysis of the plastic flow in low-carbon steel

description: The uploaded archive represents a source code to reproduce the results of numerical modeling of microstructure-based plastic flow in low-carbon steel.
DOI: 10.17632/45823273hs.1
title: Bub1 immunoprecipitation and Mass spectrometry analysis

description: Bub1 immunoprecipitation and Mass spectrometry analysis of control HeLa cells and Bub1-depleted clones
DOI: 10.17632/72sh3pp4m2.2
title: Local IBD Benchmark

description: Simulated local IBD graph files from our paper "Selecting Clustering Algorithms for IBD Mapping". The 'benchmark.tgz' file includes the main dataset with various cluster counts, false-positive, and false-negative edge rates. These simulations were used to test and evaluate the clustering algorithms and characteristics of local IBD graphs. The 'benchmark_realistic.tgz' includes the simulated dataset with realistic clusters counts, false-positive, and false-negative edge rates. The simulations were used to evaluate the performance of clustering algorithms in realistic situations.
DOI: 10.17632/5hh6m992dt.1
title: Replication materials for: Global ownership patterns

description: Replication materials for the paper "Global ownership patterns", Mariscal (2021), published in the Journal of Economic Dynamics and Control.
DOI: 10.17632/ftbx795t8z.1
title: RNA-seq analysis of control HeLa cells and Bub1-depleted clones

description: RNA-seq analysis of control HeLa cells and Bub1-depleted clones
DOI: 10.17632/gkgbvwm6vc.3
title: Khoa Cuong PO Pain

description: Postoperative Pain Endodontic Treatment
DOI: 10.17632/dg46vm7wwx.1
title: Biologics for Pediatric Moderate-to-Severe Plaque Psoriasis

description: Supplemental tables and figures
DOI: 10.17632/p2gmfmtyxv.1
title: Artificial Solid-Electrolyte Interphase and Bamboo-like N-doped Carbon Nanotube Enabled Highly Rechargeable K-CO2 Batteries

description: Physical characterization, electrochemical analysis and performance test data on K-CO2 battery
DOI: 10.17632/mcwkkfknwc.5
title: Data for: Barred beach profile equilibrium investigated with a process-based numerical model

description: This dataset supports the manuscript entitled Barred beach profile equilibrium investigated with a process-based numerical model.
DOI: 10.17632/kfvd7295dp.1
title: Cobalt-catalyzed SiC derived carbon

description: Processed data for "Tunable carbon microstructures synthesized by chlorination of cobalt-containing silicon carbide as electrodes in electrolytic double layer capacitors"
DOI: 10.17632/68ft6g8nvm.1
title: Is it Real? The Portfolio Balance Channel in Action and its Potential Consequences

description: To work out the potential response of the stock market to a QE shock of similar order to that of 2020 we need to compute the impulse response functions from an estimated VAR. The dataset from January 2008 to December 2020 covering the period pre, during and post financial QE response for both the UK and the US, is used for estimation. This follows closely both Joyce et al. (2011) and Shah et al. (2019), extending their analysis into more recent events with wider implications.
DOI: 10.17632/85pxpdsx38.2
title: Survey of protein degradation rates across growth conditions in E. coli and S. cerevisiae.

description: We compiled two data sets from the literature on rates of protein degradation in E. coli and S. cerevisiae across growth conditions. We set out to look at trends that do not depend on the specific metabolic mechanisms behind the attainment of a certain growth level. To this end, we identified and quantified how degradation rates change as the overall growth rate of the cell changes. For each species, we annotated and computed the growth rate and the average degradation rate in different growth conditions. We find that degradation levels increase as cells grow slower. This dataset was compiled as part of our research study on protein degradation across growth conditions. Readers can find further information on the data and related findings by reading our article at the following link: https://doi.org/10.1101/2021.03.25.436692. We have divided this Mendeley dataset into two folders: (i) the first folder contains the compiled dataset as CSV files, as well as a README file to describe how we annotated and computed all the quantities from the literature; (ii) the second folder contains two python scripts to replicate our findings and further investigate the dataset, as well as a README file that described how to use the scripts.
DOI: 10.17632/gn73tk2rc9.2
title: Stage-Wise Stochastic Deep Learning Inversion Framework for Subsurface Structure Identification

description: The codes for the paper "Stage-Wise Stochastic Deep Learning Inversion Framework for Subsurface Structure Identification"，the code of OCAAE and DOCRN is suitable for the 3D case, whereas it can be readily used for 2D subsurface structure by replacing the 3D operations with their 2D counterparts in network model files. such as OCAAE_models. As for the TP model, it can be used for both 2D and 3D cases, one should modify the "inputfile" and conditional file according to different problems, then run the "GEOST.exe" program to complete the simulation. The flow and transport responses data is too large to upload, one can generate this data set by TOUGHREACT or other transport simulators according to subsurface structures.
DOI: 10.17632/fyxkjrpnhh.1
title: Mercury isotopic composition of various ocean island basalts

description: The mercury isotopic composition of the basalts was measured in 2021 by MC-ICPMS, using a Nu Plasma Instrument. We report both mass-dependent ( δ202Hg) and mass-independent (Δ199Hg, Δ201Hg) isotopic composition of mercury. The mantle composition least affected by crustal recycling is estimated from high-3He/4He lavas from Samoa and Iceland, providing an average of Δ199Hg=0.000.10, Δ201Hg=-0.020.0.09, δ202Hg=-1.71.2; 2SD, N=11. HIMU-type lava shows positive Δ199Hg, consistent with the incorporation of altered oceanic crust in its mantle source, while a Samoan (EM2) lava has negative Δ199Hg reflecting incorporation of continental crust materials into its source.
DOI: 10.17632/wzj67n7gz6.2
title: Tick CRISPR trace files

description: Sequence traces from the wild-type as well as CRISPR edited larvae of Ixodes scapularis (Embryo injections and ReMOT).
DOI: 10.6084/m9.figshare.15189533.v1
title: Zip Archive of Data and Additional Figures from An Early Burst in brachiopod evolution corresponding with significant climatic shifts during the Great Ordovician Biodiversification Event

description: An archive of R-data, excel data, R scripts, and additional figures.
DOI: 10.6084/m9.figshare.15189533
title: Zip Archive of Data and Additional Figures from An Early Burst in brachiopod evolution corresponding with significant climatic shifts during the Great Ordovician Biodiversification Event

description: An archive of R-data, excel data, R scripts, and additional figures.
DOI: 10.6084/m9.figshare.12302597
title: Transcript bins for eDicer

description: This data relates to Figure S8 of Jenkins et al. 2021 "Emergent RNA-RNA interactions can promote stability in a facultative phototrophic endosymbiosis".<br>Data corresponds to curated 'host', 'endosymbiont', and 'food' transcript datasets used for eDicer comparative analysis. <br><br>Transcript data for <i>P. bursaria</i> Yad1g1N is sourced from Kodama et al. 2014.<br>
DOI: 10.6084/m9.figshare.12302597.v1
title: Transcript bins for eDicer

description: This data relates to Figure S8 of Jenkins et al. 2021 "Emergent RNA-RNA interactions can promote stability in a facultative phototrophic endosymbiosis".<br>Data corresponds to curated 'host', 'endosymbiont', and 'food' transcript datasets used for eDicer comparative analysis. <br><br>Transcript data for <i>P. bursaria</i> Yad1g1N is sourced from Kodama et al. 2014.<br>
DOI: 10.6084/m9.figshare.13238720.v1
title: Spatial differences become similar through time after wildfire disturbance: alpha and beta-diversity responses of Mediterranean temporary ponds faunal communities

description: Wildfires are considered a world-wide disturbance which is currently being fostered by human-induced global changes. Their frequency and intensity are expected to increase in the near future in regions such as the Mediterranean basin. While terrestrial systems responses to wildfire have been thoroughly studied, aquatic systems such as temporary ponds have received less attention. Furthermore, previous works have focused on wildfire impacts in aquatics systems from a more functional and trait-based approach, but such disturbances can also impact these systems diversity at the local and regional level. In this work, we assess wildfire impacts in alpha and beta diversity of Mediterranean temporary ponds, analysing samples of pond macrofauna from before and after a wildfire that partially burned a set of temporary ponds. The wildfire did not change alpha-diversity patterns but differences in beta-diversity were observed when considering species abundance. Species with greater contribution to beta-diversity were more represented in Unburned ponds after the wildfire. These changes in species presence during the beginning of the hydroperiod increased Burned ponds regional differences (i.e., replacement increase). However, these alterations disappeared towards the middle and the end of the hydroperiod. Overall, we reported a fast recovery after the wildfire, tightly linked to a rapid recolonization that increased pond similarities. Landscape structure and ponds seasonal succession would have increased these systems resilience, but these key features against wildfire might become compromised due to global change scenarios (i.e., rise in wildfire regimes and habitat loss), representing a potential future threat to these highly diverse habitats. <br>
DOI: 10.6084/m9.figshare.15189548
title: Loconsole_et_al_raw_data from Young chicks rely on symmetry/asymmetry in perceptual grouping to discriminate sets of elements

description: Loconsole et al. Raw data for the ms Young chicks rely on symmetry/asymmetry in perceptual grouping to discriminate sets of elements
DOI: 10.6084/m9.figshare.15189548.v1
title: Loconsole_et_al_raw_data from Young chicks rely on symmetry/asymmetry in perceptual grouping to discriminate sets of elements

description: Loconsole et al. Raw data for the ms Young chicks rely on symmetry/asymmetry in perceptual grouping to discriminate sets of elements
DOI: 10.21227/7r6z-8p93
title: Goose Surface Temperature Monitoring System Based on Deep Learning Using Visible and Infrared Thermal Image Integration

description: Owing to increased biosecurity and industrial demands, the poultry houses in Taiwan are generally nonopen and closed types, with automatic environmental control and sensor equipment gradually being installed in such houses. Environmental sensors and poultry health monitoring systems are necessary to improve poultry feeding efficiency and safety. In this work, we developed a goose surface temperature monitoring system based on deep learning using visible image and integrated with infrared thermal image. This system could detect the geese in visible image and obtain the individual goose surface temperature automatically. This system consisted of an embedded system with the trained goose detection model, a visible camera, and an infrared thermal camera. The Mask R-convolutional neural network algorithm was employed to train the goose detection model by the collected goose images. The visible camera captured visible images in the poultry house, in which the geese could be identified by the trained goose detection model. The individual surface temperatures of the geese were obtained through integration of the visible and infrared thermal images. The developed monitoring systems were installed in the land and pool areas of a commercial goose house to monitor the surface temperature of the geese and achieved a precision of 97.1% and recall of 95.1%. In addition, the goose surface temperature of the pool area was observed to be lower than that of the land area. The collected individual goose surface temperature would be used as a management index to poultry house managers.
DOI: 10.25646/8943
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.6084/m9.figshare.15189510
title: Supplementary Material for: Both Ends of Values in the Hemoglobin Spectrum Are Associated with Adverse Stroke Outcomes

description: <b><i>Background and Purpose:</i></b> Existing studies on the association between hemoglobin values and stroke outcomes mostly focus on the lower side and mortality, often the only and primary endpoint. The current study was conducted to assess the association between hemoglobin concentration and a variety of poor stroke outcomes in patients with acute ischemic stroke. <b><i>Methods:</i></b> We studied 8,321 patients enrolled in the China National Stroke Registry (CNSR) between 2007 and 2008. Patients were divided into 7 groups, and a logistic regression model was used to evaluate the association. Endpoints of interest included 1-year all-cause mortality, stroke recurrence, combined endpoint, and stroke disability. Stroke disability was defined as a modified Rankin Scale of 2–6. <b><i>Results:</i></b> Patients with low and high hemoglobin values (≤11.6 g/dL and &gt;16.1 g/dL) had higher proportion of poststroke adverse events than those in other groups. As compared with the fourth group of hemoglobin values of 13.5–14.2 g/dL, the adjusted odds ratios (ORs) with 95% confidence interval (CI) of low hemoglobin values (≤11.6 g/dL) were 2.25 (1.72–2.93) for all-cause mortality, 1.30 (1.04–1.61) for stroke recurrence, 1.63 (1.33–2.01) for combined endpoint, and 1.37 (1.12–1.67) for stroke disability, respectively. And, the ORs of high hemoglobin values (&gt;16.1 g/dL) for adverse stroke outcomes were 1.72 (1.25–2.37), 1.43 (1.13–1.82), 1.43 (1.13–1.81), and 1.31 (1.06–1.63), respectively. Stratified analysis showed significant interactions between sex and categories of hemoglobin values for all-cause mortality (<i>p</i> = 0.05), stroke recurrence (<i>p</i> = 0.03), and combined endpoint (<i>p</i> = 0.01) but not for stroke disability (<i>p</i> = 0.24). <b><i>Conclusions:</i></b> Our study found both low and high hemoglobin values were associated with adverse stroke outcomes including all-cause mortality, stroke recurrence, combined endpoint, and stroke disability, which showed a U-shaped association. And, significant interactions between sex and hemoglobin concentration on all-cause mortality and stroke recurrence were also identified.
DOI: 10.6084/m9.figshare.15189510.v1
title: Supplementary Material for: Both Ends of Values in the Hemoglobin Spectrum Are Associated with Adverse Stroke Outcomes

description: <b><i>Background and Purpose:</i></b> Existing studies on the association between hemoglobin values and stroke outcomes mostly focus on the lower side and mortality, often the only and primary endpoint. The current study was conducted to assess the association between hemoglobin concentration and a variety of poor stroke outcomes in patients with acute ischemic stroke. <b><i>Methods:</i></b> We studied 8,321 patients enrolled in the China National Stroke Registry (CNSR) between 2007 and 2008. Patients were divided into 7 groups, and a logistic regression model was used to evaluate the association. Endpoints of interest included 1-year all-cause mortality, stroke recurrence, combined endpoint, and stroke disability. Stroke disability was defined as a modified Rankin Scale of 2–6. <b><i>Results:</i></b> Patients with low and high hemoglobin values (≤11.6 g/dL and &gt;16.1 g/dL) had higher proportion of poststroke adverse events than those in other groups. As compared with the fourth group of hemoglobin values of 13.5–14.2 g/dL, the adjusted odds ratios (ORs) with 95% confidence interval (CI) of low hemoglobin values (≤11.6 g/dL) were 2.25 (1.72–2.93) for all-cause mortality, 1.30 (1.04–1.61) for stroke recurrence, 1.63 (1.33–2.01) for combined endpoint, and 1.37 (1.12–1.67) for stroke disability, respectively. And, the ORs of high hemoglobin values (&gt;16.1 g/dL) for adverse stroke outcomes were 1.72 (1.25–2.37), 1.43 (1.13–1.82), 1.43 (1.13–1.81), and 1.31 (1.06–1.63), respectively. Stratified analysis showed significant interactions between sex and categories of hemoglobin values for all-cause mortality (<i>p</i> = 0.05), stroke recurrence (<i>p</i> = 0.03), and combined endpoint (<i>p</i> = 0.01) but not for stroke disability (<i>p</i> = 0.24). <b><i>Conclusions:</i></b> Our study found both low and high hemoglobin values were associated with adverse stroke outcomes including all-cause mortality, stroke recurrence, combined endpoint, and stroke disability, which showed a U-shaped association. And, significant interactions between sex and hemoglobin concentration on all-cause mortality and stroke recurrence were also identified.
DOI: 10.5285/c972e316-2b93-1b4e-e053-6c86abc02285
title: Near-surface bubble size distributions and co-located upward-pointing sonar data collected in high wind conditions in the North Atlantic, October-November 2013.

description: The data included in this publication are bubble measurements from the HiWINGS (High Wind Air-sea Gas Exchange Study) cruise from October 9, 2013 to November 14, 2013. An 11 metre long free-floating spar buoy was deployed from the R/V Knorr KN213-3 cruise to sample bubbles during four major storms in the North Atlantic, and all the major bubble data is included here. The buoy included an upward-looking sonar, an acoustical resonator, a bubble camera, and a foam camera. It was released into the water to float freely for the duration of the storm and was retrieved by the ship after the storm had passed.
DOI: 10.3886/e114267v1-94160
title: Replication data for: Blunt Instruments: Avoiding Common Pitfalls in Identifying the Causes of Economic Growth

description: Concern has intensified in recent years that many instrumental variables used in widely-cited growth regressions may be invalid, weak, or both. Attempts to remedy this general problem remain inadequate. We show how a range of published studies can offer more evidence that their results are not spurious. Key steps include: grounding growth regressions in more generalized theoretical models, deployment of new methods for estimating sensitivity to violations of exclusion restrictions, opening the "black box" of GMM with supportive evidence of instrument strength, and utilization of weak-instrument robust tests and estimators. (JEL C52, E23, F35, O41, O47)
DOI: 10.6084/m9.figshare.15189552
title: Supplementary Material for: Ex vivo Fusion Confocal Microscopy of Colorectal Polyps: A Fast Turnaround Time of Pathological Diagnosis

description: <b><i>Background:</i></b> Colorectal cancer screening programs have accomplished a mortality reduction from the disease but have created bottlenecks in endoscopy units and pathology departments. We aimed to explore the feasibility of ex vivo fusion confocal microscopy (FuCM) to improve the histopathology diagnostic efficiency and reduce laboratory workload. <b><i>Methods:</i></b> Consecutive fresh polyps removed at colonoscopy were scanned using ex vivo FuCM, then went through histopathologic workout and hematoxylin and eosin (H&E) diagnosis. Two pathologists blinded to H&E diagnosis made a diagnosis based on FuCM scanned images. <b><i>Results:</i></b> Thirty-six fresh polyps from 22 patients were diagnosed with FuCM and H&E. Diagnostic agreement between H&E and FuCM was 97.2% (kappa = 0.96) for pathologist #1 and 91.7% (kappa = 0.87) for pathologist #2. Diagnostic performance concordance between FuCM and H&E to discern adenomatous from nonadenomatous polyps was 100% (kappa = 1) for pathologist #1 and 97.2% (kappa = 0.94) for pathologist #2. Global interobserver agreement was 94.44% (kappa = 0.91) and kappa = 0.94 to distinguish adenomatous from nonadenomatous polyps. <b><i>Conclusions:</i></b> Ex vivo FuCM shows an excellent correlation with standard H&E for the diagnosis of colorectal polyps. The clinical direct benefit for patients, pathologists, and endoscopists allows adapting personalized surveillance protocols after colonoscopy and a workload decrease in pathology departments.
DOI: 10.6084/m9.figshare.15189552.v1
title: Supplementary Material for: Ex vivo Fusion Confocal Microscopy of Colorectal Polyps: A Fast Turnaround Time of Pathological Diagnosis

description: <b><i>Background:</i></b> Colorectal cancer screening programs have accomplished a mortality reduction from the disease but have created bottlenecks in endoscopy units and pathology departments. We aimed to explore the feasibility of ex vivo fusion confocal microscopy (FuCM) to improve the histopathology diagnostic efficiency and reduce laboratory workload. <b><i>Methods:</i></b> Consecutive fresh polyps removed at colonoscopy were scanned using ex vivo FuCM, then went through histopathologic workout and hematoxylin and eosin (H&E) diagnosis. Two pathologists blinded to H&E diagnosis made a diagnosis based on FuCM scanned images. <b><i>Results:</i></b> Thirty-six fresh polyps from 22 patients were diagnosed with FuCM and H&E. Diagnostic agreement between H&E and FuCM was 97.2% (kappa = 0.96) for pathologist #1 and 91.7% (kappa = 0.87) for pathologist #2. Diagnostic performance concordance between FuCM and H&E to discern adenomatous from nonadenomatous polyps was 100% (kappa = 1) for pathologist #1 and 97.2% (kappa = 0.94) for pathologist #2. Global interobserver agreement was 94.44% (kappa = 0.91) and kappa = 0.94 to distinguish adenomatous from nonadenomatous polyps. <b><i>Conclusions:</i></b> Ex vivo FuCM shows an excellent correlation with standard H&E for the diagnosis of colorectal polyps. The clinical direct benefit for patients, pathologists, and endoscopists allows adapting personalized surveillance protocols after colonoscopy and a workload decrease in pathology departments.
DOI: 10.5281/zenodo.5211482
title: MOSWOC Kp Forecast Verification Dataset

description: The accompanying data is made available under the terms of the Non-Commercial Government Licence (http://www.nationalarchives.gov.uk/doc/non-commercial-government-licence/version/2/) Met Office Space Weather Operations Centre (MOSWOC) Kp and Kuk forecasts are produced by a human forecaster every 3 hours, out to 3 days ahead. A value for Kp and Kuk is provided for each 3hourly interval. A 3 day forecast text summary is at the end of each file following the Kp and Kuk forecast values. MOSWOC Kp forecast files (.json) provided here are for the dates 1st March through 30th September 2019.