cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29143331.v1
title: Variant-level odds ratios for 18 phenotypes

description: This dataset is from the paper "Extracting and calibrating evidence of variant pathogenicity from population biobank data", which evaluates the broad potential of using population cohort data as evidence of pathogenicity in variant assessment. The dataset contains variant-level odds ratios in 18 phenotypes spanning 41 genes, calculated using case data from 469,803 UK Biobank participants. These odds ratios can be used as PS4 (population) evidence of pathogenicity within the ACMG/AMP variant interpretation framework using the calibrated thresholds provided in Table 2 (for specific phenotypes), Supplementary Table 5 (for specific genes), or Table 3 (overall).medRxiv preprint: https://www.medrxiv.org/content/10.1101/2024.08.14.24311911v2We share odds ratio data by phenotype, yielding 18 files. Each file has the following columns:<b>gene:</b> Gene in which the variant is located (e.g., <i>LDLR</i>)<b>variant:</b> Variant in chr-pos-ref-alt format (e.g., 11-108227661-C-T)<b>odds_estimate:</b> Odds ratio that measures disease (i.e., phenotype) enrichment for the variant<b>odds_lower:</b> Odds ratio 95% confidence lower bound<b>odds_upper:</b> odds ratio 95% confidence upper bound<b>revel_score:</b> REVEL score for the variant, obtained via the Variant Effect Predictor (VEP)<b>clinvar_status:</b> Variant ClinVar status (one of "P/LP", "B/LB", "VUS", or "Absent")Note that not all variants listed have associated odds ratios. Typically comprising the majority of variants, this is because for many variants, all participants with the variant don't have the associated disease. If there are not enough such participants, a corrected odds ratio will be a distorted measure. See the "Calculating variant-level odds ratios from population cohort data" section of the methods for more information. If an odds ratio could not be calculated for a variant, the "odds_estimate", "odds_lower", and "odds_upper" columns have the sentinel value "-".
DOI: 10.6084/m9.figshare.6265358.v1
title: Patient02

description: Female Patient with 185 slice of pulmonary embolism CT-Angiography.
DOI: 10.17632/tz9gj2dz2x
title: Evolution of Nursing in Albania: From The Beginnings to The Present

description: This document explores the evolution of nursing in Albania, tracing its development from early periods to the most recent advancements. From its early beginnings to the modern era, nursing has undergone many transformations and improvements. This material covers key developments in professional training, reform efforts, and ongoing challenges faced by the profession throughout its history, including recent advancements in education and scientific research.
DOI: 10.6084/m9.figshare.1526133.v2
title: Medicinal uses of African plants

description: These are records of medicinal uses of African plants (primarily trees). The data come from a variety of published sources which are all referenced.
DOI: 10.6084/m9.figshare.21638606.v2
title: Raw reads and assembled sequence of Inverse PCR products

description: This is the supporting data for the inverse PCR test for the formation of circular intermediates. The .ab1 and .fasta files can be accessed using the BioEdit.exe software .To further explore the recombination regions of the "segment 1", "segment 2" and "segment 3", please align the assembled sequences against pEFM9-1 (accessed by NCBI Accession Number: CP098744.1) using the online BLASTn strategy. Similarly, please align the assembled sequence against pEFT30-1(accessed by NCBI Accession Number: CP113829.1) to explore the recombination region of the "acquired segment".
DOI: 10.6084/m9.figshare.28755104.v1
title: Databases corresponding to the variables included in the article, High seroprevalence of equine influenza virus in Colombian horses,

description: Databases corresponding to the variables included in the article, High seroprevalence of equine influenza virus in Colombian horses,
DOI: 10.17632/j29vpkhwb9
title: Soil indicator data from a Conservation Agriculture trial in Eastern Cape, South Africa

description: The data was generated from the analysis of the soil samples that were collected from the conservation agriculture (CA) trial in Phandulwazi, Eastern Cape, South Africa. The experimental design for the treatments used was a split-split plot design. Standard soil extraction and analytical methods were used to generate the data. The tillage treatments were the conventional tillage (CT) and no-till (NT) and the residue management treatments were designated as follows:  R+ as crop residue retention and R- as crop residue removal. The crop rotation treatments were maize-fallow-maize (MFM), maize-fallow-soybean (MFS), maize-wheat-maize (MWM) and maize-wheat-soybean (MWS).
DOI: 10.17632/pzrgrp57yf
title: Mechanical stress-strain data of Canadian small clear spruce-pine-fir wood

description: The dataset present on this repository represents stress-strain data from mechanical testing of clear wood specimens based on ASTMD143-22 standard. This repository contains four type of information: raw data, metadata, Matlab routines, and processed data.

Each raw text file contains data in columns. The first column represents the time. The second column represents the load, recorded from the MTS machine load cell. The third column represents the stroke of the actuator. The fourth and last column represents the deformation, measured from either the extensometer or the linear voltage displacement transducer.  

Next, the metadata file on tests contain information such as the cross-sectional dimensions of each specimen, as well as the calculated ultimate strength and modulus of elasticity. 

Matlab routines were written to process files. There is one Matlab file for each test type (compression, tension, or shear) and each wood grade. The “.m” Matlab files can be opened with any text editor. 

Lastly, processed files follow the same blueprint as the raw files. Each processed text file contains data in columns. The first column represents the strain imposed on the specimen. This quantity is dimensionless and is given in percentage. The second column represents the engineering stress resulting from the strain applied on the specimen. The unit for stresses is mega-pascal (MPa).
DOI: 10.6084/m9.figshare.21936801.v1
title: R Script and data for concave niche modelling to assess the potential of 138 African forgotten food crops for staple crop diversification under climate change

description: R Script for concave-niche modeling and corresponding datasets. This R Script is being used for the analysis of a paper titled "Forgotten food crops for healthy diets in a warmer sub-Saharan Africa".
DOI: 10.6084/m9.figshare.23999790.v1
title: Interview RAP Sheet

description: Rapid assessment procedure (RAP) sheets were used for note-taking during the interviews. Commonly used in rapid evaluations - designed to improve the rapidity and replicability of research during public health emergencies - RAP sheets help reduce the need for long-form transcription and encourage reflexivity for interviewers and researchers, reduce interviewer bias, and enable validation of internal consistency with coding. The RAP sheet contained the summary of questions from the topic guide, and the interviewers took notes of what the participants said regarding each question during the interview.<br>
DOI: 10.6084/m9.figshare.29069462.v1
title: Source Data_NC-20250514.xlsx

description: Calcium (Ca) signalling is critical for plant responses to aluminum (Al) stress, with STOP1-mediated <i>ALMT1</i> expression playing a crucial role in Arabidopsis Al resistance. However, the specific intracellular Ca<sup>2+</sup> sensors responsible for transducing Al signals in this process remain unclear. In this study, we identified CPK21 and CPK23, members of the CPK family, as key regulators promoting STOP1-mediated <i>ALMT1</i> expression under Al stress, significantly influencing malate exudation from roots to limit Al accumulation in root tips. Al stress triggers rapid Ca<sup>2+</sup>-dependent accumulation of CPK21 and CPK23 in the plasma membrane, cytoplasm and nucleus of root apical cells. The Al-activated CPK21 and CPK23 subsequently phosphorylate STOP1 in both the cytoplasm and nucleus of root apical cells, stabilizing STOP1 by preventing its interaction with RAE1, ultimately enhancing Al resistance. This entire process is Ca<sup>2+</sup>-dependent. The study unveils a previously undisclosed regulatory network in which CPKs integrate Al-evoked Ca<sup>2+</sup> signals and transcriptional reprogramming through the Ca<sup>2+</sup>-CPK21/23-STOP1 cascade to effectively respond to and adapt to Al stress in plants.
DOI: 10.17632/ct4hdxrrcz
title: Data for: Sizing a battery-supercapacitor energy storage system with battery degradation consideration for high-performance electric vehicles

description: This is the dynamic programming algorithm developed in Matlab and tailored for solving the optimal battery replacements and financial costs of a series of HESSs. The state of energy of supercapacitor is adopted as the state variable and battery replacements and financial costs are the objectives, respectively. This file can perform standalone optimization without vehicle model, however, the other two files "Bat_SC_tables.m" and "pb_pwr_TUS06.m" must be imported into Matlab workspace before running this file. This file accounts for the results in Sections 5.4. Every line in this file is carefully annotated.
DOI: 10.17632/dt33kwy49z
title: Data for: Fatigue Life Of Aluminium Alloy 2017-T4 In Bending Conditions After Preliminary Corrosion Period

description: Results of bending fatigue tests (R=-1) of 2017-T4 alloy after 7, 14 and 28 days of immersion in 3.5% NaCl solution in running or demineralized water
DOI: 10.6084/m9.figshare.3552858.v1
title: Appendix A. Citations for all studies used to derive data for meta-analysis.

description: Citations for all studies used to derive data for meta-analysis.
DOI: 10.17632/53kgyy3rth
title: Den selection criteria

description: Climate warming is favoring the expansion of non-native species onto the Arctic tundra, where they may compete over resources with native species. In the harsh tundra conditions, sympatric red foxes (Vulpes vulpes) and Arctic foxes (Vulpes lagopus) may compete over denning sites, which are important for their reproduction and survival. We studied den selection by red and Arctic foxes in spring and summer, and their possible competition over this resource in an ecotone near Churchill, Manitoba, on the west coast of Hudson Bay, by examining patterns of den occupancy related to den characteristics and spacing patterns between neighbors. Based on 11 years of occupancy data for 42 tundra dens, we determined that red and Arctic foxes favored dens based on shelter quality in both spring and summer, rather than proximity of specific habitats (and thus specific prey). Mechanisms of den selection differed between species, which may promote co-existence, and areas of high den density were avoided by red foxes and preferred by Arctic foxes. We did not find evidence of exclusion of Arctic foxes by red foxes: spacing patterns showed that foxes spaced themselves based on their need for space, territoriality and food availability but not interference. In the current abiotic Arctic conditions, taiga species settling on the tundra could coexist with tundra endemics, at given density thresholds of both competitors. As Arctic conditions may become milder, an increase in newcomer abundance could disrupt the current balance that favors species coexistence. 
This study was carried out in and around Wapusk National Park, on the western edge of Hudson Bay near Churchill, Manitoba, Canada (58°45’ N; 94°10’ W), where red foxes have settled in tundra dens to reproduce exhibiting a continuous presence since 2010.
DOI: 10.17632/8sv6wp3dh8
title: ALTDSE: An Arnoldi–Lanczos program to solve the time-dependent Schrödinger equation

description: Abstract We describe a general ab initio and non-perturbative method to solve the time-dependent Schrödinger equation (TDSE) for the interaction of a strong attosecond laser pulse with a general atom. While the field-free Hamiltonian and the dipole matrices may be generated using an arbitrary primitive basis, they are assumed to have been transformed to the eigenbasis of the problem before the solution of the TDSE is propagated in time using the Arnoldi-Lanczos method. Probabilities for survival of th... Title of program: ALTDSE Catalogue Id: AEDM_v1_0 Nature of problem We describe a computer program for a general ab initio and non-perturbative method to solve the time-dependent Schrödinger equation (TDSE) for the interaction of a strong attosecond laser pulse with a general atom [1,2]. The probabilities for survival of the initial state, excitation of discrete states, and single ionization due to multi-photon processes can be obtained. Versions of this program held in the CPC repository in Mendeley Data AEDM_v1_0; ALTDSE; 10.1016/j.cpc.2009.03.005 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/r8nzht4kjg
title: Absorption and emission spectra data

description: Absorption in the visible light spectrum for Irgacure 784 and camphorquinone photoinitiators and the emission spectra for an OLED microdisplay.
DOI: 10.17632/skztgkyv3z
title: Dataset: Overcoming barriers to supply chain integration

description: Data base of articles used to the Manuscript: "Overcoming barriers to supply chain integration: prioritization of solutions via a multicriteria decision support method".
DOI: 10.17632/vfgn7dd2z4
title: Keystroke Dynamics Database

description: Keystroke Dynamics - database contains free-typing keystroke dynamics, correlated with user IDs. 15000 records for keystroke dynamics. 150 users, 100 records have been obtained per user. Data of user "X" is in file "user_X". Each row of the file represents a user keystroke dynamics vector, each column represents one feature attribute. The last column contains class labels.
DOI: 10.6084/m9.figshare.8131823.v1
title: An improved genome assembly and genetic linkage map for asparagus bean, Vigna unguiculata ssp. sesquipedialis

description: SNP markers and bin map of asparagus bean
DOI: 10.6084/m9.figshare.95454.v1
title: BOPP

description: Raw data from Polish nonprofit organizations Baza Organizacji Pozytku Publicznego
DOI: 10.6084/m9.figshare.27064528.v2
title: Causal associations of gastroesophageal reflux disease with sepsis and sepsis mortality within 28 days: a bidirectional two-sample Mendelian randomization study

description: <b>Causal associations of gastroesophageal reflux disease with sepsis and sepsis mortality within 28 days: a bidirectional two-sample Mendelian randomization stud</b><b>y</b>
DOI: 10.6084/m9.figshare.27740646.v3
title: RAGProbe: Breaking RAG Pipelines with Evaluation Scenarios

description: This contains the dataset of the manual execution results of evaluation scenarios, the list of RAG repositories, the automatic generation of question answer pairs and execution of evaluation scenarios across 5 open-source RAG pipelines using our approach and RAGAS approach, and automation scripts for generating question-answer pairs and execution of generated questions across the selected RAG pipelines.
DOI: 10.17632/3j2vfsfkz5
title: Dataset of Bird’s Eye Chilies Farm for Stereo Image Semantic Segmentation

description: It is a dataset of stereo video frames taken in various location within a bird's eye chili farm.
DOI: 10.6084/m9.figshare.16566414.v1
title: Online Food Delivery Service Questionnaire 2021.xlsx

description: The data recorded the survey questionnaire of the consumers' perception and attitude towards online food delivery services (OFDS) among Malaysians during and post COVID-19 pandemic. It was adopted from past studies.<br>The variables that studied are the convenience motivation, perceived ease of use, time-saving orientation and price-saving orientation on the attitude and behavioural intention towards using OFDS continuingly after the pandemic.<br>
DOI: 10.15468/dl.qrmc8n
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Oxytropis stracheyana Bunge",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 23 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012986-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/3228jznyct
title: Magnetic Tweezers Data in Brief: A benchmark data set for the mechanical properties of double-stranded DNA and RNA under torsional constraint

description: The data sets are organised in folders corresponding to the respective figures in the paper.
DOI: 10.6084/m9.figshare.11804643.v1
title: Predictive factors of low anterior resection syndrome following anterior resection of the rectum.

description: ABSTRACT Objective: to identify predictors of low anterior resection syndrome (LARS) that can contribute to its early diagnosis and treatment. Methods: we conducted a retrospective cohort study of patients undergoing anterior resection of the rectum between 2007 and 2017 in the Coloproctology Service of the Federal University of Parana Clinics Hospital. We performed Receiver Operating Characteristic Curve (ROC) analysis to identify LARS predictive factors. Results: we included 64 patients with complete data. The men's age was 60.1±11.4 years and 37.10% were male. Twenty patients (32.26%) had LARS. The most reported symptoms were incomplete evacuation (60%) and urgency (55%). In the univariate analysis, the distance from the anastomosis to the anal margin (p&lt;0.001), neoadjuvant therapy (p=0.0014) and ileostomy at the time of resection (p=0.0023) were predictive of LARS. The ROC curve analysis showed a 6.5cm cut-off distance from the anastomosis to the anal margin as a predictor of LARS. Conclusion: distance between the anastomosis and the anal margin, neoadjuvant therapy history and preparation of stoma are conditions that can help predict the development of LARS. Guidance and involvement in patient education, as well as early management, can potentially reduce the impact of these symptoms on patients' quality of life.
DOI: 10.17632/bs6n3v65c8
title: Available data for: Navigating a Warming World

description: This dataset includes the (1) raw data and the (2) R codes for the manuscript: Navigating a Warming World: Short-term exposure to simulated heatwaves during pupal development affects responses to UV light in male bumblebees.

(1) CSV files
Data includes response variables: Response to Stimulus (binary variable; incorrect = 0 or correct = 1), Brood Temperature (ºC), and Body Size (mm) (normal error structure).
(2) R Codes with notes included
DOI: 10.17632/f7jdpkdnxr
title: Measuring and modeling speech intelligibility in real and loudspeaker-based virtual sound environments [dataset]

description: This datafile contains the results from the speech intelligibility experiment collected as part of the publication with the same name as this dataset. The manuscript has the following doi: 10.1016/j.heares.2019.02.003. The speech reception threshold (SRT) is shown as the target to masker ratio (TMR) in dB. It is referred to the written publication for more details on the conditions.
DOI: 10.17632/xmcg82mx9k
title: MonkeyPox2022Tweets: The First Public Twitter Dataset on the 2022 MonkeyPox Outbreak

description: Please cite the following paper when using this dataset:
N. Thakur, “MonkeyPox2022Tweets: The first public Twitter dataset on the 2022 MonkeyPox outbreak,” Preprints, 2022, DOI: 10.20944/preprints202206.0172.v2

Abstract
The world is currently facing an outbreak of the monkeypox virus, and confirmed cases have been reported from 28 countries. Following a recent “emergency meeting”, the World Health Organization just declared monkeypox a global health emergency. As a result, people from all over the world are using social media platforms, such as Twitter, for information seeking and sharing related to the outbreak, as well as for familiarizing themselves with the guidelines and protocols that are being recommended by various policy-making bodies to reduce the spread of the virus. This is resulting in the generation of tremendous amounts of Big Data related to such paradigms of social media behavior. Mining this Big Data and compiling it in the form of a dataset can serve a wide range of use-cases and applications such as analysis of public opinions, interests, views, perspectives, attitudes, and sentiment towards this outbreak. Therefore, this work presents MonkeyPox2022Tweets, an open-access dataset of Tweets related to the 2022 monkeypox outbreak that were posted on Twitter since the first detected case of this outbreak on May 7, 2022. The dataset is compliant with the privacy policy, developer agreement, and guidelines for content redistribution of Twitter, as well as with the FAIR principles (Findability, Accessibility, Interoperability, and Reusability) principles for scientific data management.

Data Description
The dataset consists of a total of 255,363 Tweet IDs of the same number of tweets about monkeypox that were posted on Twitter from 7th May 2022 to 23rd July 2022 (the most recent date at the time of dataset upload). The Tweet IDs are presented in 6 different .txt files based on the timelines of the associated tweets. The following provides the details of these dataset files.
•	Filename: TweetIDs_Part1.txt (No. of Tweet IDs: 13926, Date Range of the Tweet IDs: May 7, 2022 to May 21, 2022)
•	Filename: TweetIDs_Part2.txt (No. of Tweet IDs: 17705, Date Range of the Tweet IDs: May 21, 2022 to May 27, 2022)
•	Filename: TweetIDs_Part3.txt (No. of Tweet IDs: 17585, Date Range of the Tweet IDs: May 27, 2022 to June 5, 2022)
•	 Filename: TweetIDs_Part4.txt (No. of Tweet IDs: 19718, Date Range of the Tweet IDs: June 5, 2022 to June 11, 2022)
•	Filename: TweetIDs_Part5.txt (No. of Tweet IDs: 47718, Date Range of the Tweet IDs: June 12, 2022 to June 30, 2022)
•	Filename: TweetIDs_Part6.txt (No. of Tweet IDs: 138711, Date Range of the Tweet IDs: July 1, 2022 to July 23, 2022)

The dataset contains only Tweet IDs in compliance with the terms and conditions mentioned in the privacy policy, developer agreement, and guidelines for content redistribution of Twitter. The Tweet IDs need to be hydrated to be used.
DOI: 10.17632/msy7k3myrx
title: Data for: A Sensitive Quantitative Analysis of Abiotically Synthesized Short Homopeptides using Ultraperformance Liquid Chromatography and Time-of-Flight Mass Spectrometry

description: A Sensitive Quantitative Analysis of Abiotically Synthesized Short Homopeptides using Ultraperformance Liquid Chromatography and Time-of-Flight Mass Spectrometry
DOI: 10.6084/m9.figshare.26075962.v3
title: Artifact for "Effective Fuzzing within CI/CD Pipelines (Registered Report)"

description: This artifact contains the exported docker container that can be imported to reproduce the results shown in the paper "Effective Fuzzing within CI/CD Pipelines (Registered Report)". A more detailed overview of using this is present in the attached README.
DOI: 10.17632/2jmr23w4wk
title: Data for: Sequential carbonate mineralization of desalination brine for CO2 emission reduction