cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7171748
title: Performance evaluation of the GastroPlus<sup>TM</sup> software tool for prediction of the toxicokinetic parameters of chemicals

description: The accurate prediction of toxicokinetic parameters arising from oral, dermal and inhalation routes of chemical exposure is a key element in chemical safety assessments. In this research, the physiologically based pharmacokinetic (PBPK) GastroPlus<sup>TM</sup> software was evaluated against a series of chemicals for the prediction of toxicokinetic parameters. Overall, 67% of predicted intrinsic clearance (Clint) values were within 1- to 10-fold of empirical data for 463 compounds, and 87% of the predicted fraction unbounded in plasma (Fup) values were 1- to 3-fold of empirical data for 441 compounds. The <i>r</i><sup>2</sup> (coefficient of determination) of predicted C<sub>max</sub> (maximum plasma concentration) and AUC (Area Under Curve) values versus the corresponding empirical values from oral, inhalation and dermal exposures ranged from 0.04 to 0.92. Among the three exposures, the highest <i>r</i><sup>2</sup> values, ranging from 0.80 to 0.92, were observed for oral exposure predictions, where 88% of the compounds had 1- to 10-fold differences between predicted and empirical values for C<sub>max</sub> and AUC. The predicted plasma C<sub>ss</sub> (steady-state plasma concentration) values were consistent with those C<sub>ss</sub> values calculated by in vitro-to-in vivo extrapolation (IVIVE) approaches using experimental parameters. Based on the evaluation results, GastroPlus™ can be used as a QSAR/PBPK tool for toxicokinetic parameter predictions.
DOI: 10.7284/106972
title: Winch data collected during research cruise W1107A using a Markey DUSH-5 instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7171742
title: Identification of an aldehyde oxidase involved in indole-3-acetic acid synthesis in <i>Bombyx mori</i> silk gland

description: Auxin is thought to be an important factor in the induction of galls by galling insects. We have previously shown that both galling and nongalling insects synthesize indole-3-acetic acid (IAA) from tryptophan (Trp) via two intermediates, indole-3-acetaldoxime (IAOx) and indole-3-acetaldehyde (IAAld). In this study, we isolated an enzyme that catalyzes the last step “IAAld → IAA” from a silk-gland extract of <i>Bombyx mori</i>. The enzyme, designated “BmIAO1”, contains two 2Fe–2S iron–sulfur-cluster-binding domains, an FAD-binding domain, and a molybdopterin-binding domain, which are conserved in aldehyde oxidases. BmIAO1 causes the nonenzymatic conversion of Trp to IAAld and the enzymatic conversion of IAOx to IAA, suggesting that BmIAO1 alone is responsible for IAA production in <i>B. mori</i>. However, a detailed comparison of pure BmIAO1 and the crude silk-gland extract suggested the presence of other enzymes involved in IAA production from Trp. <b>Abbreviations:</b> BA: benzoic acid; CE: collision energy; CXP: collision cell exit potential; DP: declustering potential; IAA: indole-3-acetic acid; IBI1: IAA biosynthetic inhibitor-1; IAAld: indole-3-acetaldehyde; ICA: indole-3-carboxylic acid; IAOx: indole-3-acetaldoxime; IEtOH: indole-3-ethanol; LC–MS/MS: liquid chromatography–tandem mass spectrometry; Trp: tryptophan An enzyme, BmIAO1, that converts IAAld to IAA was identified in <i>Bombyx mori</i>, which could be responsible for IAA production in a broad range of insects
DOI: 10.6084/m9.figshare.7171748.v1
title: Performance evaluation of the GastroPlus<sup>TM</sup> software tool for prediction of the toxicokinetic parameters of chemicals

description: The accurate prediction of toxicokinetic parameters arising from oral, dermal and inhalation routes of chemical exposure is a key element in chemical safety assessments. In this research, the physiologically based pharmacokinetic (PBPK) GastroPlus<sup>TM</sup> software was evaluated against a series of chemicals for the prediction of toxicokinetic parameters. Overall, 67% of predicted intrinsic clearance (Clint) values were within 1- to 10-fold of empirical data for 463 compounds, and 87% of the predicted fraction unbounded in plasma (Fup) values were 1- to 3-fold of empirical data for 441 compounds. The <i>r</i><sup>2</sup> (coefficient of determination) of predicted C<sub>max</sub> (maximum plasma concentration) and AUC (Area Under Curve) values versus the corresponding empirical values from oral, inhalation and dermal exposures ranged from 0.04 to 0.92. Among the three exposures, the highest <i>r</i><sup>2</sup> values, ranging from 0.80 to 0.92, were observed for oral exposure predictions, where 88% of the compounds had 1- to 10-fold differences between predicted and empirical values for C<sub>max</sub> and AUC. The predicted plasma C<sub>ss</sub> (steady-state plasma concentration) values were consistent with those C<sub>ss</sub> values calculated by in vitro-to-in vivo extrapolation (IVIVE) approaches using experimental parameters. Based on the evaluation results, GastroPlus™ can be used as a QSAR/PBPK tool for toxicokinetic parameter predictions.
DOI: 10.6084/m9.figshare.7171742.v1
title: Identification of an aldehyde oxidase involved in indole-3-acetic acid synthesis in <i>Bombyx mori</i> silk gland

description: Auxin is thought to be an important factor in the induction of galls by galling insects. We have previously shown that both galling and nongalling insects synthesize indole-3-acetic acid (IAA) from tryptophan (Trp) via two intermediates, indole-3-acetaldoxime (IAOx) and indole-3-acetaldehyde (IAAld). In this study, we isolated an enzyme that catalyzes the last step “IAAld → IAA” from a silk-gland extract of <i>Bombyx mori</i>. The enzyme, designated “BmIAO1”, contains two 2Fe–2S iron–sulfur-cluster-binding domains, an FAD-binding domain, and a molybdopterin-binding domain, which are conserved in aldehyde oxidases. BmIAO1 causes the nonenzymatic conversion of Trp to IAAld and the enzymatic conversion of IAOx to IAA, suggesting that BmIAO1 alone is responsible for IAA production in <i>B. mori</i>. However, a detailed comparison of pure BmIAO1 and the crude silk-gland extract suggested the presence of other enzymes involved in IAA production from Trp. <b>Abbreviations:</b> BA: benzoic acid; CE: collision energy; CXP: collision cell exit potential; DP: declustering potential; IAA: indole-3-acetic acid; IBI1: IAA biosynthetic inhibitor-1; IAAld: indole-3-acetaldehyde; ICA: indole-3-carboxylic acid; IAOx: indole-3-acetaldoxime; IEtOH: indole-3-ethanol; LC–MS/MS: liquid chromatography–tandem mass spectrometry; Trp: tryptophan An enzyme, BmIAO1, that converts IAAld to IAA was identified in <i>Bombyx mori</i>, which could be responsible for IAA production in a broad range of insects
DOI: 10.7284/106786
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise W1108A using a Hawaii UHDAS instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17632/s2fcfb8phh.1
title: Analysis of multiome sequencing data from neuroblastoma cell lines

description: R scripts used to process and analyze multiome (joint GEX and ATAC) single-nucleus sequencing data from human neuroblastoma cell lines.
DOI: 10.15468/dl.yd55hb
title: Occurrence Download

description: A dataset containing 150 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lethedon microphylla (Guillaumin) Kosterm."
 ]
}

 The dataset includes 150 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044148-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.atzxx5
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Limoniopsis davisii Bokhari"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044150-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kxvvjj
title: Occurrence Download

description: A dataset containing 309 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepionurus sylvestris Blume"
 ]
}

 The dataset includes 309 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044149-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/7958965
title: Electoral Bonds India: Complete Dataset
DOI: 10.15468/dl.4jgj77
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Litsea gongshanensis H.W.Li"
 ]
}

 The dataset includes 74 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044152-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/wh7m9kyst3.1
title: Datacortech data and code

description: Datacortech Data and Code
DOI: 10.15468/dl.em3bnt
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Limoniopsis owerinii (Boiss.) Lincz."
 ]
}

 The dataset includes 37 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044153-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ztsmk2
title: Occurrence Download

description: A dataset containing 240 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lethedon oblonga (Schltr.) Kosterm."
 ]
}

 The dataset includes 240 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044154-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xxzmyv
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Linum basarabicum (Savul. & Rayss) Klokov ex Juz."
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044155-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9399rp
title: Occurrence Download

description: A dataset containing 1534 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepironia articulata (Retz.) Domin"
 ]
}

 The dataset includes 1534 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044156-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.23729/2a4b6f95-c9ea-4eb9-8e95-da0fbddf85a6
title: 2023_Kou_Cellulose

description: This directory contains data and files associated with the publication

Zhennan Kou, Dmitry Tolmachev, Maisa Vuorte, and Maria Sammalkorpi, "Interactions of NaCl with cellulose Iβ crystal surfaces and the effect on cellulose hydration: a molecular dynamics study", Cellulose (2024).


https://doi.org/10.1007/s10570-024-05831-x 

Please cite the above publication when using this data set!

This work was a part of the Academy of Finland’s Flagship Programme under Projects No. 318890 and 318891 (Competence Center for Materials Bioeconomy, FinnCERES). The work was also supported by the Academy of Finland through its Centres of Excellence Programme (2022-2029, LIBER) under project no. 346111 (M.S.). Computational resources by CSC IT Centre for Finland and RAMI – RawMatters Finland Infrastructure are also gratefully acknowledged. The authors thank Dr. Suvi Arola and Prof. Markus B. Linder for useful discussions.
DOI: 10.15468/dl.y9vxz9
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Litsea gracilipes Hook.fil."
 ]
}

 The dataset includes 80 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044157-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/fdnp-az60
title: Synchrotron Data - Lintern 1814 (Oct 2009) - Ionic and metallic gold associated with in situ root tubules

description: Calcrete is an important sampling medium for gold exploration. There is a strong correlation between Au and calcrete (principally calcium carbonate) which is remarkable given the accepted disparate chemistries of the elements concerned, and that calcrete accumulation is a result of a drying climate. Evidence of plant roots are preserved as
hollow tubules in calcrete. The experiment will investigate links between the observed trace gold and microfine root tubules. A positive result will provide direct evidence for the role of plants in gold deposition and will have widespread implications for those studying mineral exploration, climatology, soil pedology and Australian plants.
DOI: 10.15468/dl.2t2gnq
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Limonium acuminatum L.Bolus"
 ]
}

 The dataset includes 48 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044158-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c2m7hb
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lethedon ovata (Guillaumin) Kosterm."
 ]
}

 The dataset includes 12 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044159-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hb4mg7
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Linum betsiliense Baker"
 ]
}

 The dataset includes 55 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044160-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4z7fge
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepisanthes alata (Blume) Leenh."
 ]
}

 The dataset includes 164 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044162-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.46x72d
title: Occurrence Download

description: A dataset containing 50322634 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-84.77117 29.88757,-81.23903 24.7092,-79.67816 25.57499,-80.7917 31.86622,-85.14365 32.08125,-84.77117 29.88757))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 1339-2024"
 ]
}

 The dataset includes 50322634 records from 1154 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044131-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21985/n2-5sbk-6013
title: mt_seq node csv file
DOI: 10.15468/dl.tdv5z3
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Litsea grandifolia Lecomte"
 ]
}

 The dataset includes 40 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044163-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pjzfyf
title: Occurrence Download

description: A dataset containing 50322634 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-84.77117 29.88757,-81.23903 24.7092,-79.67816 25.57499,-80.7917 31.86622,-85.14365 32.08125,-84.77117 29.88757))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 1339-2024"
 ]
}

 The dataset includes 50322634 records from 1154 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044132-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fqc4r6
title: Occurrence Download

description: A dataset containing 1368 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Philodromus collinus C.L.Koch, 1835",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 1368 records from 119 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083052-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ppxt9
title: Occurrence Download

description: A dataset containing 29824 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Leptinotarsa decemlineata (Say, 1824)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 29824 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083051-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pgqdvj
title: Occurrence Download

description: A dataset containing 216062 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is New Zealand",
 "DatasetKey is one of (iNaturalist Research-grade Observations, Allan Herbarium (CHR), NZ National Vegetation Survey occurrence data)",
 "Geometry POLYGON((174.62401 -41.41644,174.92897 -41.4591,174.99152 -41.41644,175.07659 -41.3397,175.19165 -41.15084,175.25894 -41.09874,175.29151 -41.00756,175.26111 -40.97066,175.23289 -40.94461,175.16343 -40.90553,175.08962 -40.96414,174.62401 -41.15924,174.58815 -41.27892,174.62401 -41.41644))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 216062 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083030-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v7z2qf
title: Occurrence Download

description: A dataset containing 581 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Philodromus praedatus O.Pickard-Cambridge, 1871",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 581 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083053-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bjvzpj
title: Occurrence Download

description: A dataset containing 29824 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Leptinotarsa decemlineata (Say, 1824)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 29824 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083054-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ba7y4q
title: Occurrence Download

description: A dataset containing 4597 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brachychiton acerifolius (A.Cunn. ex G.Don) F.Muell."
 ]
}

 The dataset includes 4597 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083055-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.72t3fx
title: Occurrence Download

description: A dataset containing 8597 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Philodromus dispar Walckenaer, 1826",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 8597 records from 247 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083056-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9q7vsx
title: Occurrence Download

description: A dataset containing 592 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Philodromus emarginatus (Schrank, 1803)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 592 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083058-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.