cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gbbk59
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-99.16622055674512 23.511777301927168,-97.72082441113483 23.511777301927168,-97.72082441113483 24.957173447537457,-99.16622055674512 24.957173447537457,-99.16622055674512 23.511777301927168))",
 "HasCoordinate is true",
 "TaxonKey is Bromeliaceae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 81 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006055-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p3hu2i
title: Occurrence Download

description: A dataset containing 127 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Caulerpa nummularia Harvey ex J.Agardh, 1873"
 ]
}

 The dataset includes 127 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018640-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.be3klk
title: Occurrence Download

description: A dataset listing the 1028448 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Protozoa"
 ]
}

 The dataset's 1028448 records were derived from 1740 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006055-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15187602
title: Pasteurized Akkermansia muciniphila ameliorates preeclampsia via inhibiting mitochondrial dysfunction-mediated placental apoptosis in vivo and in vitro

description: Fecal microbiota analysis by 16S rRNA gene sequencing.
description: Preeclampsia (PE) is a severe metabolic disorder that occurs during pregnancy and is linked to dysbiosis of the gut microbiota, characterised by a decrease in Akkermansia muciniphila (AKK). Emerging evidence suggests that pasteurised Akkermansia muciniphila (pAKK) is a promising candidate for preventing or treating obesity-related metabolic disorders. Nonetheless, the modulatory function and underlying mechanisms of pAKK as a supplement for PE have yet to be investigated. In this study, we examined the impact of pAKK oral administration on PE and its underlying mechanisms. Our findings demonstrate that pAKK significantly improved PE-like symptoms in mice induced by nitro-L-arginine methylester (L-NAME) in a dose-dependent manner. Of note, pAKK inhibited L-NAME-induced placental apoptosis, countered apoptosis-related biochemical alterations like the increase in the Bax/Bcl-2 ratio, and the activation of cleaved-Caspase-3, alongside mitigating L-NAME-induced placental mitochondrial dysfunction. Hypoxia-reoxygenation (H/R)-induced HTR8/SVneo cells have been established as an in vitro model to mimic the condition of PE. Interestingly, similar results were also obtained in vitro; mitochondrial dysfunction-mediated apoptosis induced by H/R in HTR-8/SVneo cells was prevented by pAKK. Furthermore, the PI3K inhibitor (LY-294002) significantly negated the protective effects of pAKK on mitochondrial dysfunction and apoptosis. Our findings indicate that pAKK improved PE-like symptoms both in vivo and in vitro by activating the PI3K/Akt signalling pathway, highlighting the potential for developing a probiotic therapeutic agent based on AKK for PE.
DOI: 10.5281/zenodo.15187603
title: Pasteurized Akkermansia muciniphila ameliorates preeclampsia via inhibiting mitochondrial dysfunction-mediated placental apoptosis in vivo and in vitro

description: Fecal microbiota analysis by 16S rRNA gene sequencing.
description: Preeclampsia (PE) is a severe metabolic disorder that occurs during pregnancy and is linked to dysbiosis of the gut microbiota, characterised by a decrease in Akkermansia muciniphila (AKK). Emerging evidence suggests that pasteurised Akkermansia muciniphila (pAKK) is a promising candidate for preventing or treating obesity-related metabolic disorders. Nonetheless, the modulatory function and underlying mechanisms of pAKK as a supplement for PE have yet to be investigated. In this study, we examined the impact of pAKK oral administration on PE and its underlying mechanisms. Our findings demonstrate that pAKK significantly improved PE-like symptoms in mice induced by nitro-L-arginine methylester (L-NAME) in a dose-dependent manner. Of note, pAKK inhibited L-NAME-induced placental apoptosis, countered apoptosis-related biochemical alterations like the increase in the Bax/Bcl-2 ratio, and the activation of cleaved-Caspase-3, alongside mitigating L-NAME-induced placental mitochondrial dysfunction. Hypoxia-reoxygenation (H/R)-induced HTR8/SVneo cells have been established as an in vitro model to mimic the condition of PE. Interestingly, similar results were also obtained in vitro; mitochondrial dysfunction-mediated apoptosis induced by H/R in HTR-8/SVneo cells was prevented by pAKK. Furthermore, the PI3K inhibitor (LY-294002) significantly negated the protective effects of pAKK on mitochondrial dysfunction and apoptosis. Our findings indicate that pAKK improved PE-like symptoms both in vivo and in vitro by activating the PI3K/Akt signalling pathway, highlighting the potential for developing a probiotic therapeutic agent based on AKK for PE.
DOI: 10.15468/c3zfc7
title: A new species of Batillipes (Arthrotardigrada: Batillipedidae) from the mid littoral zone of the southeast coast of India

description: This dataset contains the digitized treatments in Plazi based on the original journal article Vishnudattan, N. K., Rubal, Marcos, Nandan, S. Bijoy (2023): A new species of Batillipes (Arthrotardigrada: Batillipedidae) from the mid littoral zone of the southeast coast of India. Zootaxa 5346 (2): 163-172, DOI: 10.11646/zootaxa.5346.2.4, URL: http://dx.doi.org/10.11646/zootaxa.5346.2.4AbstractStudies of marine tardigrades from Indian waters is very limited and relatively obscure. A new species of marine tardigrade is described from the southeast coast of India as part of an effort to better understand the marine tardigrade biodiversity of the Indian subcontinent. Batillipes kalami sp. nov. described from the sandy sediments of the mid littoral zone can be differentiated from all its congeners by the presence of unconstricted primary clavae, two pairs of lateral body projections between leg II and leg III, long and blunt ended lateral body projections between leg III and leg IV, shape of leg IV sensory organs and the presence of dorsal indentations in its head.
DOI: 10.15468/ty4h5b
title: A new species within the Enteromius kerstenii complex (Actinopterygii, Cyprinidae, Smiliogastrinae) from south-western Ethiopia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Englmaier, Gernot K., Chai, Min, Wubie, Alemayehu, Collins, Rupert A., Getahun, Abebe (2024): A new species within the Enteromius kerstenii complex (Actinopterygii, Cyprinidae, Smiliogastrinae) from south-western Ethiopia. Zootaxa 5512 (2): 166-184, DOI: 10.11646/zootaxa.5512.2.2, URL: http://dx.doi.org/10.11646/zootaxa.5512.2.2AbstractA new species of small-sized smiliogastrin barb, Enteromius gamo sp. nov., is described from tributaries to lakes Abaya and Chamo in south-western Ethiopia. The new species belongs to a readily diagnosable group commonly identified as E. kerstenii, exhibiting a thickened and serrated last unbranched ray in the dorsal fin, a low number of scales in the lateral series (≤ 27), and a yellow, orange or reddish blotch on operculum. Pairwise genetic distances between the new species from Ethiopia and specimens of E. kerstenii from close to the type locality in north-eastern Tanzania were 7.5–8.3 % (COI) and 8.9–10.1 % (cytb). Enteromius gamo sp. nov. is morphologically distinguished from E. kerstenii and all examined congeners from Tanzania, Kenya, and Uganda primarily by short anterior (15.8–35.1 %, mean 27.4 %, of snout length) and posterior (63.2–95.7 %, mean 81.0 %, of snout length) barbels. The new species is known only from wetlands and side channels of rivers (Hare, Sile, and Sago) along the western shores of lakes Abaya and Chamo.
DOI: 10.15468/ynps6g
title: Sub-lethal toxic effect of cadmium chloride (CdCl) on freshwater murrel Channa punctata (BLOCH)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Choudhury, Mrinmoy, Deka, Prantik, Purkayastha, Debashree (2024): Sub-lethal toxic effect of cadmium chloride (CdCl) on freshwater murrel Channa punctata (BLOCH). International Journal of Fisheries and Aquatic Studies 12 (1): 63-66, DOI: 10.22271/fish.2024.v12.i1a.2893, URL: http://dx.doi.org/10.22271/fish.2024.v12.i1a.2893AbstractThe purpose of this study was to look into the effects of cadmium chloride (CdCl 2) on freshwater murrel Channa punctata (Bloch). The impacts in fishes include changes in morphological behaviour i.e., changes in opercular activity, hypoxic condition and colour changes in gills, profuse mucus secretion, alteration of protein levels in gill and liver tissues when exposed to sub-lethal doses of CdCl 2 (at 5 ppm and 10 ppm) after the estimation of protein content of these tissues. When exposed to 5 ppm dose, the protein level in gill was found to be 70.3± 0.25 mg protein/gram of tissue and at 10 ppm it was 65.3± 0.30 mg protein/gram of tissue. Similarly the protein content of liver tissue at 5 ppm and 10 ppm doses was found to be 79.3±0.20 and 71.3± 0.25 mg protein/gram of tissue respectively. These values showed deviation from the Control which were at 82.5±0.20 89.7± 0.15 mg protein/gram of tissue respectively for the gill and liver tissues.
DOI: 10.15468/sm94ah
title: A new species of Peucedanum (Apiaceae: Apioideae) from south India

description: This dataset contains the digitized treatments in Plazi based on the original journal article Prabhukumar, Konickal Mambetta, Rampradeep, Rajamani, Hareesh, Vadakkoot Sankaran, Jabeena, Manjakulam Khadhersha, Maya, Chandrasekharan Nair, Balachandran, Indira (2024): A new species of Peucedanum (Apiaceae: Apioideae) from south India. Phytotaxa 644 (1): 74-78, DOI: 10.11646/phytotaxa.644.1.11, URL: http://dx.doi.org/10.11646/phytotaxa.644.1.11AbstractPeucedanum vasudevanii K.M.P.Kumar, Rampradeep, Hareesh, Jabeena & Maya, a new species in the family Apiaceae is described from Minnampara hills of Nelliyampathy forest, Palakkad district, Kerala, India. The species shows morphological similarities with P. pradeepianum but is distinct in many attributes such as hirtellous stem, lanceolate basal leaflets, oblong purple involucre bracts, subequal hirtellous rays, purple anthers, larger mericarp and six commissural vittae.
DOI: 10.15468/s3xztv
title: Pleurothallis mark-wilsonii a new species from the subsection Acroniae series Amphigyae from the Western Andes of Colombia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Moreno, Juan Sebastián, Sierra-Ariza, Mario Alexei, Hoyos, David, Galindo-Tarazona, Robinson (2022): Pleurothallis mark-wilsonii a new species from the subsection Acroniae series Amphigyae from the Western Andes of Colombia. Phytotaxa 568 (3): 283-288, DOI: 10.11646/phytotaxa.568.3.5, URL: http://dx.doi.org/10.11646/phytotaxa.568.3.5AbstractA new species of Pleurothallis from the Western Andes of Colombia is described and illustrated. The new species belongs to subsection Acroniae of the series Amphigyae, morphologically resembles Pleurothallis amphigya, but differs mainly by the ovate-lanceolate lip, with two divergent, elongate keels, located at the base up to about the middle of the lip (vs. triangular trilobed, the disc with a developed glenion at the base).
DOI: 10.15468/4r57p4
title: Biología reproductiva de Porphyriops melanops bogotensis (Gruiformes, Rallidae) subespecie endémica y amenazada del norte de los Andes

description: This dataset contains the digitized treatments in Plazi based on the original journal article Castro-Vargas, Fernando, Rosselli, Loreta (2020): Biología reproductiva de Porphyriops melanops bogotensis (Gruiformes, Rallidae) subespecie endémica y amenazada del norte de los Andes. Caldasia 42 (1): 50-62, DOI: 10.15446/caldasia.v42n1.80853, URL: https://doi.org/10.15446/caldasia.v42n1.80853ABSTRACTThe Rallidae is a widely distributed family in the planet, with a high proportion of endangered species and limited information on reproductive biology. Porphyriops melanops bogotensis is an endangered and isolated endemic Colombian subspecies and no detailed information about its breeding biology and nestling development. We describe the breeding biology of P. m. bogotensis and the development of the nestlings, thus providing novel information that may help its conservation. The study was done in the Bogotá area highland plateau between 2016 and 2019. We surveyed the area weekly in search of nests for description and monitoring. We artificially incubated fourteen eggs; these chicks were raised in captivity until completely developed while measuring growth and taking notes on color changes. The birds nested all year long; clutch size varied between three and six eggs, with an incubation period of 18-20 days. The rails reached their definite size by day 55, with significant differences between sexes. The beak acquired the final color by day 75, while adult eye and plumage color were reached between 150 and 165 days after hatching. In general terms reproductive behavior and development of P. m. bogotensis are like what is known for other members of the Rallidae. The detailed description of coloration change of the subspecies during its development allows precise age determination of individuals in the wild.
DOI: 10.15468/mrs68z
title: Primer registro de Trachymela sloanei (Blackburn, 1897) (Coleoptera: Chrysomelidae) en Chile

description: This dataset contains the digitized treatments in Plazi based on the original journal article Villablanca, Javier, Villablanca-Miranda, Vicente (2022): Primer registro de Trachymela sloanei (Blackburn, 1897) (Coleoptera: Chrysomelidae) en Chile. Revista Chilena de Entomología (Rev. Chil. Entomol.) 48 (3): 525-529, DOI: 10.35249/rche.48.3.22.06, URL: http://dx.doi.org/10.35249/rche.48.3.22.06Resumen. Con base en ejemplares de Chrysomelidae (Coleoptera: Chrysomeloidea) recolectados en sectores urbanos de la Región de Coquimbo, se registra por primera vez en Chile a Trachymela sloanei (Blackburn, 1897), especie fitófaga de origen australiano considerada plaga de los Eucalyptus. Se presume que esta especie se introdujo y estableció recientemente en esta región del país debido a que los registros hasta ahora conocidos se circunscriben a unas pocas localidades de la Provincia de Elqui. Se proveen fotografías del adulto para facilitar su identificación, junto a registros de distribución e información general del hábitat donde la especie fue recolectada.Palabras clave: Chrysomelinae; Eucalyptus; introducción; plaga forestal.
DOI: 10.15468/7nwdva
title: Crassothonna moniliformis (Asteraceae, Senecioneae), a new species from the Albany Centre of floristic endemism, South Africa

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mckenzie, Robert J., Dold, Anthony P. (2024): Crassothonna moniliformis (Asteraceae, Senecioneae), a new species from the Albany Centre of floristic endemism, South Africa. Phytotaxa 641 (4): 243-254, DOI: 10.11646/phytotaxa.641.4.1, URL: http://dx.doi.org/10.11646/phytotaxa.641.4.1AbstractCrassothonna moniliformis is described as a new species from the Eastern Cape province, South Africa. The species is a prostrate, succulent-leaved perennial herb distinguished from Crassothonna capensis in having slender, weak, trailing, distantly branched stems, with nodal adventitious roots developing precociously, forming diffuse patches to ± 50 cm diam., with erect to ascending, usually red-purple, globose-obovoid to obovoid to subclavate leaves 10–25 mm long, and a more slender synflorescence bearing fewer capitula (1–4 per flowering shoot) with fewer ray florets (7–9) and functionally staminate peripheral disc florets. The species is geographically localised, with the known Extent of Occurrence and Area of Occupancy &lt;10 km 2, and is habitat-restricted, growing in shallow sandy sediments overlying exposed sandstone pavements among coastal thicket. The single known population is threatened by sand mining and informal housing encroachment. Based on the IUCN Red List categories and criteria, a conservation assessment of Vulnerable (VU – D2) is recommended.
DOI: 10.15468/dl.w2e9p3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cirsium arvense x rivulare"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009503-250127130748423/datasets/export for details.
DOI: 10.5281/zenodo.14737235
title: Data for "Quasi-aperiodic grain boundary phases of Σ5 tilt grain boundaries in refractory metals"

description: Supporting data of GB structures, data, and scripts for the paper titled "Quasi-aperiodic grain boundary phases in Σ5 tilt grain boundaries in refractory metals."
DOI: 10.5281/zenodo.14737236
title: Data for "Quasi-aperiodic grain boundary phases of Σ5 tilt grain boundaries in refractory metals"

description: Supporting data of GB structures, data, and scripts for the paper titled "Quasi-aperiodic grain boundary phases in Σ5 tilt grain boundaries in refractory metals."
DOI: 10.5281/zenodo.14791113
title: MiniMLS

description: MiniMLS is a subset of the Multilingual LibriSpeech (MLS) dataset, extracted from the test set. It includes 100 utterances per language for the following seven languages: Dutch, French, German, Italian, Polish, Portuguese, and Spanish.
DOI: 10.5281/zenodo.14791114
title: MiniMLS

description: MiniMLS is a subset of the Multilingual LibriSpeech (MLS) dataset, extracted from the test set. It includes 100 utterances per language for the following seven languages: Dutch, French, German, Italian, Polish, Portuguese, and Spanish.
DOI: 10.5281/zenodo.14791143
title: Sandeep Acharya Dissertation 2025
title: Supplementary Documents
DOI: 10.5281/zenodo.14791144
title: Sandeep Acharya Dissertation 2025
title: Supplementary Documents
DOI: 10.6084/m9.figshare.28058216
title: Data for the manuscript '<b>Adverse maternal and fetal outcomes in mouse models of prenatal infections</b>'

description: Data for the manuscript<b>:</b><b>'Adverse maternal and fetal outcomes in mouse models of prenatal infections'</b>Evgeniya V Shmeleva, Delia Hawkes, Cecilia Lusuardi, Yasmin Adewusi, Salvatore Valenti, Francesco Colucci*<b>Abstract</b>Prenatal infections are a leading cause of adverse pregnancy outcomes, yet the mechanisms underlying pathogen-specific effects on maternal and fetal health remain poorly understood. Here we conducted a comparative analysis of four mouse models of prenatal infection: <i>Toxoplasma gondii</i> (intraperitoneal), vaccinia virus (intranasal), murine cytomegalovirus (intravenous) and influenza A virus (intranasal). We found markedly different effects on maternal morbidity and mortality, with <i>T. gondii</i> causing severe pregnancy-specific pathology leading to complete maternal mortality by 8 days post-infection, despite similar pathogen loads in pregnant and non-pregnant mice. Vaccinia virus caused prenatal morbidity, while cytomegalovirus and influenza induced only mild, transient effects. The maternal mortality in <i>T.gondii </i>infection was most likely due to immunopathology, while vaccinia virus caused prenatal morbidity possibly due to tissue infection. None of the pathogens directly infected the fetuses, yet both <i>T. gondii</i> and vaccinia virus significantly impaired both uterine vascular remodelling and fetal growth. Notably, pregnancy was found to be a modifier of local but not systemic immune responses, with reduced inflammatory cytokine production in uterine tissue of infected pregnant mice compared to non-pregnant controls. These models provide a systematic platform for understanding pathogen-specific mechanisms of pregnancy complications and identifying therapeutic targets.
DOI: 10.25903/c5j3-1p16
title: Data from: Destabilization of mutualistic interactions shapes the early heat stress response of the coral holobiont

description: <p><strong>Background: </strong>This study explores the stability of the symbiotic relationship between coral and their dinoflagellate algae (Symbiodiniaceae) under increasing heat stress. In a 2-month manipulative experiment, the thermotolerant coral Porites lutea was exposed to increasing temperatures, from 28˚C to 32˚C (0 &ndash; 8 Degree Heating Weeks, DHW), and the stability of the host-symbiont relationship was assessed through coral and Symbiodiniaceae transcriptomics, microbial 16S rRNA gene sequencing and physiological measurements. </p>
<p><strong>The data record contains:</strong></p>
<ul>
<li>link to the NCBI BioProject containing raw sequence data generated from 16S rRNA gene sequencing (PRJNA1050834)</li>
<li>link to the NCBI BioProject containing raw sequence data generated from mRNA sequencing (PRJNA1050834)</li>
<li>one csv file with the coral Health score used in the analyses</li>
<li>one csv file with the photosynthesis and respiration data</li>
<li>one csv file with the Symbiodiniaceae photochemical effective efficiency data</li>
<li>link to the GitHub repository with the R scripts generated for the analyses</li>
</ul>
<p><strong>Software/equipment used to create/collect the data:  </strong></p>
<ul>
<li>16S rRNA amplification (515F-806rB primers) of gDNA from coral (Porites lutea) and seawater samples; Illumina MiSeq sequencing (2x250 bp).</li>
<li>RNA sequencing from coral samples; NovaSeq 6000 S2 (2 x 100 bp)</li>
<li>health score assessment over time using the CoralWatch Coral Health Chart (Siebeck et al 2006)</li>
<li>measures of net photosynthesis and respiration rates over time by assessing oxygen concentration using an Optical probe after placing corals in 600 mL plastic chambers for 50-min incubation under light conditions (130 &micro;mol photons m&minus;2 s&minus;1) and 75-min incubation in dark conditions, respectively.</li>
<li>measures of photochemical effective efficiency over time using a mini-PAM fluorometer (Walz, Germany; settings: MI = 4; SI = 8; SW = 0.8; G=2; D=2) </li>
</ul>
<p><strong>Software/equipment used to manipulate/analyse the data: </strong></p>
<ul>
<li>amplicon paired-end reads were analysed in QIIME 2 (v2020.8), and output data were imported and analysed in R (v 4.0.3).</li>
<li>reference-based transcirptomics was applied using the RNA-seq aligner STAR, and output data were imported and analysed in R (v 4.0.3).</li>
<li>physiological measures were analysed in R (v 4.0.3).</li>
</ul>
DOI: 10.15468/dl.jvnpxm
title: Occurrence Download

description: A dataset containing 515 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Populus alba × tremula"
 ]
}

 The dataset includes 515 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009504-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pq6z98
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cirsium acaulon x arvense"
 ]
}

 The dataset includes 55 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009505-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.