cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19746448.v1
title: Additional file 14 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 14: Table S13. Pathway analysis on the customized collection of 51 CRC-related gene sets.
DOI: 10.6084/m9.figshare.19746457
title: Additional file 2 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 2: Table S1. Patient information, CMS classification and mutational status.
DOI: 10.6084/m9.figshare.19746460
title: Additional file 3 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 3: Table S2. Cell count by cell type and patient from stromal, immune and Epithelial compartments.
DOI: 10.6084/m9.figshare.19746460.v1
title: Additional file 3 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 3: Table S2. Cell count by cell type and patient from stromal, immune and Epithelial compartments.
DOI: 10.6084/m9.figshare.19746457.v1
title: Additional file 2 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 2: Table S1. Patient information, CMS classification and mutational status.
DOI: 10.6084/m9.figshare.19746463
title: Additional file 4 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 4: Table S3. Cell counts by cell subtypes and samples from stromal and immune and epithelial compartments.
DOI: 10.6084/m9.figshare.19746466
title: Additional file 5 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 5: Table S4. Cell count by CMS subtype and patient from Epithelial compartments of Lee et al. 2020 [18] data and Our CRC data.
DOI: 10.6084/m9.figshare.19746463.v1
title: Additional file 4 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 4: Table S3. Cell counts by cell subtypes and samples from stromal and immune and epithelial compartments.
DOI: 10.6084/m9.figshare.19746469
title: Additional file 6 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 6: Table S5. List of significant Pseudo Bulk differentially expressed genes in CMS from malignant cells.
DOI: 10.6084/m9.figshare.19746466.v1
title: Additional file 5 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 5: Table S4. Cell count by CMS subtype and patient from Epithelial compartments of Lee et al. 2020 [18] data and Our CRC data.
DOI: 10.6084/m9.figshare.19746469.v1
title: Additional file 6 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 6: Table S5. List of significant Pseudo Bulk differentially expressed genes in CMS from malignant cells.
DOI: 10.6084/m9.figshare.19746472
title: Additional file 7 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 7: Table S6. List of significant differentially expressed genes from Fibroblast.
DOI: 10.6084/m9.figshare.19746472.v1
title: Additional file 7 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 7: Table S6. List of significant differentially expressed genes from Fibroblast.
DOI: 10.6084/m9.figshare.19746475
title: Additional file 8 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 8: Table S7. The P-values for pairwise t-tests comparisons (with Benjamani-Hochberg correction) of cell abundance across CMS.
DOI: 10.6084/m9.figshare.19746475.v1
title: Additional file 8 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 8: Table S7. The P-values for pairwise t-tests comparisons (with Benjamani-Hochberg correction) of cell abundance across CMS.
DOI: 10.6084/m9.figshare.19746478
title: Additional file 9 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 9: Table S8. List of significant differentially expressed genes from Myeloid cells.
DOI: 10.6084/m9.figshare.19746478.v1
title: Additional file 9 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 9: Table S8. List of significant differentially expressed genes from Myeloid cells.
DOI: 10.6084/m9.figshare.20296545.v1
title: Dataset - Preprints as a driver of open science: opportunities for Southeast Asia

description: This dataset is related to a preprint " Preprints as a driver of open science: opportunities for Southeast Asia" uploaded to RINarxiv (link: ). The manuscript is submitted to Frontiers in Research and Metric. <br> Southeast Asia is an emerging force of open access scholarly output. For example, Indonesia is in a tight competition with Britain as the largest publisher of open access journals and the second largest producer of open access articles in the world (according to DOAJ and the COKI OA Dashboard respectively). However, this support for open practices is not yet reflected in institutional research policies in Southeast Asian countries, which still rely on criteria influenced by world university rankings that focus on publication outputs and do not incorporate elements related to research culture, integrity, or open science. Preprints have gained increasing attention across disciplines in the last few years, but they are still not included in institutional policies in SouthEast Asia. This paper discusses the potential for preprints to be a driving force for open science and for quality and integrity in scholarly outputs from Southeast Asia. There is a fledgling preprinting culture in the region, catalyzed by the RINarxiv preprint server in Indonesia and the Malaysia Open Science Platform. We argue that preprints have many advantages: opportunities for open access and for researchers to maintain copyright to their work, wide dissemination, encouraging feedback and critical thinking, and community governance. With these advantages, preprints can become a fast and open communication hub between researchers and all stakeholders in the research process. We recommend regulatory and practical steps to incorporate preprints into science policy and researchers’ practices as an effort to promote research integrity, open data and reproducibility.
DOI: 10.15151/esrf-es-880773551
title: Determining the structure of epitaxially stabilised uranium

description: Determining the structure of epitaxially stabilised uranium on Al2O3 substrate and W buffer
DOI: 10.15151/esrf-es-881933665
title: Microstructure of Ge_0.83Sn_0.17 microcrystals

description: Dark field microscopy of GeSn microcrystals before and after heating
DOI: 10.5281/zenodo.6514646
title: Binary model

description: Simulation inputs to produce OB+BH binary. Description to be expanded later. Mesa version 15140
DOI: 10.5281/zenodo.6514645
title: Binary model

description: Simulation inputs to produce OB+BH binary. Description to be expanded later. Mesa version 15140
DOI: 10.6084/m9.figshare.19196966.v3
title: Supplementary Data accompanying: "Raptors avoid the confusion effect by targeting fixed points in dense aerial prey aggregations"

description: This archive contains all of the custom-written MATLAB scripts, functions, and workspace files supplied as Supplementary Data accompanying the paper: <br> "Steering clear of the confusion effect: aerial predators target fixed points in dense prey aggregations" by Caroline H. Brighton, Laura N. Kloepper, Lucy Larkman, Lillias Zusi, Kathryn McGowan, Graham K. Taylor <br> as described in the README.txt. The remaining files are contained within the zipped folder Brighton_et_al.zip, together with the set of checkerboard images used for single camera calibration, and the results of all of the guidance simulations contained in the spreadsheet simulation_data.xlsx.
DOI: 10.6084/m9.figshare.19196966.v2
title: Supplementary Data accompanying: "Steering clear of the confusion effect: aerial predators target fixed points in dense prey aggregations"

description: This archive contains all of the custom-written MATLAB scripts, functions, and workspace files supplied as Supplementary Data accompanying the paper:<br>"Steering clear of the confusion effect: aerial predators target fixed points in dense prey aggregations" by Caroline H. Brighton, Laura N. Kloepper, Lucy Larkman, Lillias Zusi, Kathryn McGowan, Graham K. Taylor<br>as described in the README.txt. The remaining files are contained within the zipped folder Brighton_et_al.zip, together with the set of checkerboard images used for single camera calibration, and the results of all of the guidance simulations contained in the spreadsheet simulation_data.xlsx.
DOI: 10.5281/zenodo.6824899
title: Benchmarked Methods Prediction

description: Characterizing and Detecting Methods to be Benchmarked under Performance Unit Test
DOI: 10.5281/zenodo.6824898
title: Benchmarked Methods Prediction

description: Characterizing and Detecting Methods to be Benchmarked under Performance Unit Test
DOI: 10.6084/m9.figshare.14768967.v2
title: Required data for MS#2022JF006631

description: Those uploaded files are required data for manuscript MS# 2022JF006631.
DOI: 10.6084/m9.figshare.20141536
title: Numerical calculations with fixed predator density from Predation shifts coevolution toward higher host contact rate and parasite virulence

description: This R file contains numerical calculations, using analytical calculations from ESM file 2, for fixed predator density.
DOI: 10.6084/m9.figshare.20141539
title: Analytical calculations with fixed predator density from Predation shifts coevolution toward higher host contact rate and parasite virulence

description: Mathematica notebook containing some analytical calculations for the case of fixed predator density.
DOI: 10.6084/m9.figshare.20141539.v1
title: Analytical calculations with fixed predator density from Predation shifts coevolution toward higher host contact rate and parasite virulence

description: Mathematica notebook containing some analytical calculations for the case of fixed predator density.
DOI: 10.6084/m9.figshare.20141536.v2
title: Numerical calculations with fixed predator density from Predation shifts coevolution toward higher host contact rate and parasite virulence

description: This R file contains numerical calculations, using analytical calculations from ESM file 2, for fixed predator density.
DOI: 10.6084/m9.figshare.20156737
title: Numerical calculations with dynamic predator density from Predation shifts coevolution toward higher host contact rate and parasite virulence

description: This R file contains numerical calculations, using analytical calculations from ESM file 2, for dynamic predator density.
DOI: 10.6084/m9.figshare.20141536.v1
title: Numerical calculations with fixed predator density from Predation shifts coevolution toward higher host contact rate and parasite virulence

description: This R file contains numerical calculations, using analytical calculations from ESM file 2, for fixed predator density.
DOI: 10.6084/m9.figshare.20156737.v1
title: Numerical calculations with dynamic predator density from Predation shifts coevolution toward higher host contact rate and parasite virulence

description: This R file contains numerical calculations, using analytical calculations from ESM file 2, for dynamic predator density.
DOI: 10.6084/m9.figshare.20131376
title: Supplementary Material for: Effect of exposure to paternal smoking on overweight and obesity in children: findings from the Children Lifeway Cohort in Shenzhen, southern China

description: Introduction: Paternal smoking associated with childhood overweight and obesity has been a concern, but studies have not investigated smoking exposure and smoking details. We investigated the association of exposures from paternal smoking as well as smoking details on offspring overweight/obesity. Methods: A total of 4513 children (aged 7-8 years) in Shenzhen were enrolled. Four different exposures from paternal smoking as well as smoking quantity, duration of smoking and age of starting smoking details were the exposure variables and demographic characteristics, circumstances of birth, dietary intake, lifestyle and nonpaternal smoking exposure were covariates in logistic regression analysis to determine the effect of paternal smoking on childhood overweight/obesity, estimating odds ratios (ORs) and 95% confidence intervals (CIs). Results: Paternal smoking was positively associated with childhood overweight/obesity (p&lt;0.05). Moreover, only pre-conception exposure, and both pre- and post-conception exposure were significantly associated with childhood overweight/obesity (OR 1.54 (95% CI 1.14-2.08) and OR 1.73 (95% CI 1.14-2.61) respectively), restricted to boys but not girls. Furthermore, for children with only pre-conception paternal-smoking exposure, the dose–response relation was positive between smoking quantity, duration of smoking, age at starting and overweight/obesity for boy offspring (P trend &lt;0.001). We did not find any significant association between only post-natal exposure to paternal smoking and childhood overweight/obesity (P&gt;0.05). Conclusions: Our findings suggest that paternal smoking is associated with boys’ overweight/obesity, and this association may due to the paternal smoking exposure before conception rather than the post-natal exposure to paternal smoking. Reducing paternal smoking exposure before conception might help reduce overweight/obesity in boys.
DOI: 10.34740/kaggle/dsv/3936710
title: Russian Invasion of Ukraine
DOI: 10.6084/m9.figshare.20296188.v1
title: Additional file 2 of Effect of preoperative nutritional support in malnourished patients with pancreatobiliary cancer: a quasi-experimental study

description: Additional file 2.
DOI: 10.6084/m9.figshare.20296647
title: Data for "Evolution of sedimentary environments and source-to-sink transport processes off the eastern Wanquan Estuary since the Holocene"

description: Data for "Evolution of sedimentary environments and source-to-sink transport processes off the eastern Wanquan Estuary since the Holocene"
DOI: 10.6084/m9.figshare.20296647.v1
title: Data for "Evolution of sedimentary environments and source-to-sink transport processes off the eastern Wanquan Estuary since the Holocene"

description: Data for "Evolution of sedimentary environments and source-to-sink transport processes off the eastern Wanquan Estuary since the Holocene"
DOI: 10.5281/zenodo.6825487
title: Scaling fish swimming recreational fishing

description: Data on fight times for recreationally angled species
DOI: 10.5281/zenodo.6825486
title: Scaling fish swimming recreational fishing

description: Data on fight times for recreationally angled species
DOI: 10.5281/zenodo.6824355
title: Theoretical Design of Optimal Molecular Qudits for Quantum Error Correction. Open data set

description: Data supporting the original figures 1, 2, 3 and 4 of the related publication.
DOI: 10.5281/zenodo.6824354
title: Theoretical Design of Optimal Molecular Qudits for Quantum Error Correction. Open data set

description: Data supporting the original figures 1, 2, 3 and 4 of the related publication.
DOI: 10.6084/m9.figshare.20011625
title: Supplementary Material for: The decision-making process regarding ovarian tissue cryopreservation in girls with Turner syndrome by patients, parents, and healthcare providers: a mixed-methods study

description: Introduction: Ovarian tissue cryopreservation (OTC) has proven to be effective in other patient groups, but the effectiveness in girls with TS is still unclear. Guidelines for counselling about OTC in TS are lacking. The aim of this study was to gain insight into the experiences of patients, parents, and healthcare providers with the decision-making process regarding OTC in girls with TS. Methods: Within a year after counselling, a survey was sent to 132 girls with TS and their parents. Furthermore, focus groups were conducted with (1) gynaecologists with subspecialty reproductive medicine, (2) paediatric endocrinologists, (3) parents of girls aged 2 to 12, and, (4) parents of girls aged 13 to 18. Transcripts were analysed using a thematic analysis approach. Results: The response rate of the survey was 45%. Of the survey respondents, 90% appreciated counselling regarding their future parenting options and considered it an addition to existing healthcare. Girls with TS and their parents indicated that the option of OTC raised hope for future genetic offspring, and instantly made them feel that their only option was to seize this opportunity. Gynaecologists and paediatricians found it challenging to truly make families grasp a realistic perspective of OTC in girls with TS. Discussion and conclusion: Offering young girls with TS the possibility of fertility preservation in an experimental setting raised high hopes and led to challenges for healthcare providers in ensuring a considered decision. The appropriate moment for counselling should be tailored to the individual and discussed with patient, parents and paediatrician.
DOI: 10.6084/m9.figshare.20296677
title: Geochemistry and modeling data for slightly altered basalts of IODP Site U1434

description: This dataset serves for manuscript " Iron isotopic variations in oceanic crust basalts caused by low-temperature seawater alteration ". Three tables can be found in the dataset, including in situ elemental data for rock surface, whole-rock geochemical data for slightly altered basalts, and results of seawater-rock interation modeling. By using these data, we propose a two-stage alteration model during seafloor weathering to expain the Fe isotopic variations of surface basalts of oceanic crust.
DOI: 10.5281/zenodo.6825661
title: Raw COVID-19 data

description: Raw COVID-19 data of paper "Exploring the worldwide impact of COVID-19 on conflict risk under climate change"
DOI: 10.5281/zenodo.6825660
title: Raw COVID-19 data

description: Raw COVID-19 data of paper "Exploring the worldwide impact of COVID-19 on conflict risk under climate change"
DOI: 10.6084/m9.figshare.19345397
title: Pan-cancer proteomic map of 949 human cell lines

description: The proteome provides unique insights into biology and disease beyond the genome and transcriptome. Lack of large proteomic datasets has restricted identification of new cancer biomarkers. Here, proteomes of 949 cancer cell lines across 28 tissue types were analyzed by mass spectrometry. Deploying a clinically-relevant workflow to quantify 8,498 proteins, these data capture evidence of cell type and post-transcriptional modifications. Integrating multi-omics, drug response and CRISPR-Cas9 gene essentiality screens with a deep learning-based pipeline revealed thousands of protein-specific biomarkers of cancer vulnerabilities. Proteomic data had highly similar power to predict drug response than the equivalent portion of the transcriptome. Further, random downsampling to only 1,500 proteins had limited impact on predictive power, consistent with protein networks being highly connected and co-regulated. This pan-cancer proteomic map (ProCan-DepMapSanger), available at https://cellmodelpassports.sanger.ac.uk, is a comprehensive resource revealing principles of protein regulation with important implications for future studies.
DOI: 10.6084/m9.figshare.19375107
title: Nondestructive Testing of Thin Composite Structures for Subsurface Defects Detection Using Dynamic Laser Speckles

description: A novel nondestructive testing method for subsurface defects detection in thin composite structures using dynamic laser speckles is proposed. In this method, a laminated composite panel containing a subsurface defect is excited by a frequency scanned ultrasonic (US) wave and is illuminated by an expanded laser beam. If one of resonant frequencies of the defect coincides with the US frequency, a local area (a region of interest or ROI) of the panel optically rough surface, placed directly above the defect, begins to vibrate, and the sequences of difference speckle patterns containing the spatial response from the defect are recorded. The formation of this response is caused by both decorrelation and speckle blurring within the local speckle pattern generated by the vibrating ROI at its opposite tilts. The accumulation of difference speckle patterns increases the intensity of the spatial response. This method differs from similar ones in that defects are detected using dynamic speckle patterns of a composite rough surface, illuminated by a single expanded laser beam. The verification of the proposed method was performed using a hybrid optical-digital experimental breadboard to test composite panels containing artificial subsurface defects, as well as a real defect.
DOI: 10.25383/city.20102876.v1
title: somatosensory oddball EEG data - short mindful meditation

description: Somatosensory oddball task with S1 standards and S2 and S3 oddballs delivered to the index (top S1; bottom S2) and ring (top S3) finger. Recorded with BrainProducts amplifiers and Recorder software. 50 participants were recored before (.1) and after (.2) a 10 minute intervention (short mindfulness or audio clip). Plus other data recored (FFMQ, STAI-T, Heartbeat counting task, breath test - see excel sheet). Corresponding manuscript accepted for publication in the journal Mindfulness.
DOI: 10.6084/m9.figshare.20189309.v2
title: Workshop evaluation form

description: This is the workshop evaluation form results. The form was distributed to the participants immediately at the end of the examiner training programme.
DOI: 10.6084/m9.figshare.20296575
title: panGraphViewer data

description: The pangenome graph files built in the panGraphViewer paper. The species are human, maize, rice, soybean, arabidopsis and L.monocytogenes
DOI: 10.6084/m9.figshare.20296575.v1
title: panGraphViewer data

description: The pangenome graph files built in the panGraphViewer paper. The species are human, maize, rice, soybean, arabidopsis and L.monocytogenes
DOI: 10.6084/m9.figshare.20189309
title: Workshop evaluation form

description: This is the workshop evaluation form results. The form was distributed to the participants immediately at the end of the examiner training programme.
DOI: 10.6084/m9.figshare.20189309.v4
title: Workshop evaluation form

description: This is the workshop evaluation form results. The form was distributed to the participants immediately at the end of the examiner training programme.
DOI: 10.6084/m9.figshare.20189309.v3
title: Workshop evaluation form

description: This is the workshop evaluation form results. The form was distributed to the participants immediately at the end of the examiner training programme.
DOI: 10.6084/m9.figshare.20294337
title: Data supporting: Community morphological traits and species diversity promote spatial vegetation patterns in Alxa plateau in NW China

description: An integrated dataset of vegetation investigation in Alxa plateau in NW China to explore the interrelationship of abiotic and biotic factors that affect the patch size distribution. And another dataset of the relative abundance of shrub species inhabited in the area to show the convergence and dissimilarity of morphological traits under climate and soil gradient. Further information including detailed methods is including in the manuscript and its supporting information.