cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/rzstnw9ytw
title: twoWayGPBEFoam: An open-source Eulerian QBMM solver for monokinetic bubbly flows

description: twoWayGPBEFoam is an open-source mesoscopic Eulerian QBMM solver for monokinetic bubbly flows. The solver is implemented within the OpenFOAM software framework. Unlike the existing macroscopic two-fluid model (TFM) solver twoPhaseEulerFoam, it can predict the size segregation phenomenon and the size-conditional velocities of the disperse phase, although it will not be able to predict the particle trajectory crossing (PTC). On theoretical grounds, the evolution of the disperse phase in multiphase flows is dictated by the generalized population balance equation (GPBE), which can be transformed into moment transport equations and solved using the finite-volume method with higher-order realizable spatial-discretization schemes and time-integration schemes. In order to address the closure problem of the size-conditional spatial flux, the size-conditional velocities need to be modeled. In many previous works, these are assumed to be identical with the disperse phase velocity predicted by the TFM. In this work, the size-conditional velocities were modeled using the velocity polynomial approximation (VPA), for which the velocity polynomial coefficients (VPCs) can be obtained from the moments themselves. By carrying out several test cases with both one-way and two-way coupling, we show that the results predicted by our solver agree well with the analytical solutions and the existing experimental data.
DOI: 10.17632/t2xgvc8pm3
title: Casπ ‘bracelet’ provides a compact platform for robust gene-editing

description: Unprocessed figure in this paper.
DOI: 10.3535/bts-f31-z51
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/d0g-g2d-gyw
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.4665235.v1
title: Rethinking the History of Common Walnut (Juglans regia L.) inEurope: its Origins and Human Interactions

description: Geographic coordinates and SSR genetic data for 91 common walnut populations sampled in Eurasia.
DOI: 10.6084/m9.figshare.8937992.v1
title: Molecular Evolution of the Glutathione S-transferase family in the Bemisia tabaci species complex - Supplementary Alignments

description: Alignments used for the positive selection tests performed in the work "Molecular Evolution of the Glutathione S-transferase family in the <i>Bemisia tabaci</i> species complex ".<br>Abstract:The glutathione S-transferase (GST) family plays an important role in the adaptation of herbivorous insects to new host plants and other environmental constrains. The family codes for enzymes that neutralize reactive oxygen species and phytotoxins through the conjugation of reduced glutathione. Here, we studied the molecular evolution of the GST family in <em>Bemisia tabaci</em>, a complex of &gt;35 sibling species, differing in their geographic and host ranges. We tested if some enzymes evolved different functionality, by comparing their sequences in six species, representing five of the six major genetic clades in the complex. Comparisons of the nonsynonymous to synonymous substitution ratios detected positive selection events in 11 codons of 5 cytosolic GSTs. Ten of them are located in the periphery of the GST dimer, suggesting a putative involvement in interactions with other proteins. Modeling the tertiary structure of orthologous enzymes, identified additional 19 mutations in 9 GSTs, likely affecting the enzymes’ functionality. Most of the mutation events were found in the environmentally responsive classes Delta and Sigma, indicating a slightly different delta/sigma tool box in each species. At a broader genomic perspective, our analyses indicated a significant expansion of the Delta GST class in <em>B. tabaci</em> and a general association between the diet breadth of hemipteran species and their total number of GST genes. We raise the possibility that at least some of the identified changes improve the fitness of the <em>B. tabaci</em> species carrying them, leading to their better adaptation to specific environments.<br>
DOI: 10.3535/scm-8q7-9xt
title: †Rhynchotrema Hall, 1860

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sgr-j9a-tak
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/88g8xpxzdr
title: Data for: New Primers, taxonomic database and cut-off value for processing nxrB gene high throughput sequencing data by MOTHUR

description: The template and taxonomic files of nxrB gene of Nitrospira for processing the high throughput sequencing data with the MOTHUR
DOI: 10.3535/216-p2q-3h1
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z2a-5ek-yzl
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/kmz4ryk9kr
title: Data for: A MATLAB Package for Automatic Extraction of Flow Index in OCT-A images by Intelligent Vessel Manipulation

description: These sample data are provided for testing OCTA analyser software
DOI: 10.3535/6zt-5lb-hyc
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qlc-ly4-l82
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/xpx7x9zh4w
title: Raw data-Stacked autoencoders as new models for an accurate Alzheimer's disease classification support using resting-state EEG and MRI measurements

description: Raw data of the research work (unit SYNLAB SDN)
DOI: 10.3535/7zj-34j-8yx
title: †Rhynchotrema Hall, 1860

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pnm-rnl-86b
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/2pc-cpd-q22
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/4ll-r05-t7f
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.23065583.v1
title: Files for synteny analysis of T6SS Gene clusters from Ralstonia wilt pathogens.

description:  
The .Zip compressed archives contain the loci for Vgr-linked Toxin/Antitoxin gene clusters from 94 Ralstonia solanacearum species complex strains. There is one .Zip per phylotype (I-IV).
When the .Zip file is uncompressed, you will find subfolders. Each subfolder corresponds to one RSSC genome. Folders are named by "phylotype-strainName".  For example, "IIC-K60" contains the loci from phylotype IIC strain K60. 
Within each subfolder, files are systematically named.
For example, "aux2_I-SL3822_CJO88_RS12855.gbk" means:
* aux2 is the systematic name of the auxiliary cluster
* I-SL3822 is the phylotype-Strain
* CJO88_RS12855 is the RefSeq gene locus tag for the Vgr in the cluster. (Occasionally, clusters lack a Vgr allele. In this case, the gene locus is given for a gene in the cluster). 
These files contain the aux locus AND the genomic context.  
There are also "*_only.gbk" files (where * stands for the beginning of the file name). These are REFERENCE files for each aux cluster. Running these with Clinker is helpful for color-coding the aux clusters in the resulting HTML file.
DOI: 10.3535/le6-z27-3ea
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/m4m-94q-303
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/grzwszn6ry
title: Diagnostic Accuracy of Transient Elastography in Hepatosteatosis in Youth with Obesity

description: Supplementary Tables 1 and 2
DOI: 10.3535/e0d-48x-2da
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vv3-926-fas
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/2ckzwfsc8n
title: Data for: Characterization and source attribution of PM10 and PM2.5 aerosols via Energy Dispersive X-Ray Fluorescence and Positive Matrix Factorization

description: Raw data for the manuscript: Characterization and source attribution of PM10 and PM2.5 aerosols via Energy Dispersive X-Ray Fluorescence and Positive Matrix Factorization.
This data include elemental composition of PM10 and PM2.5 samples analyzed by Energy Dispersive X-Ray Fluorescence spectrometry. The data was used to identify the main sources of PM10 and PM2.5 in an urban environments in La Habana, Cuba. Using this dataset, a source apportionment study employing PMF 5.0 was performed in order to assess the air quality and identify the main pollution sources.
DOI: 10.17632/zckcb8strz
title: Size and shape effects on the strength of platinum nanoparticles

description: Processed data of the "Size and shape effects on the strength of platinum nanoparticles" paper
DOI: 10.3535/5mp-5ag-d8k
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/m0e-yj4-5ch
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13128524.v1
title: Supplementary Material for: A Systematic Review of the Influence of Continuous Positive Airway Pressure on Fetal and Newborn Animal Models: Suggestions to Improve Neonatal Respiratory Care

description: <b><i>Introduction:</i></b> Prematurely born infants regularly develop respiratory distress syndrome and require assisted ventilation. Ventilation may injure the premature lung and increase the risk of bronchopulmonary dysplasia. Continuous positive airway pressure (CPAP), a form of noninvasive ventilation, is commonly used in modern neonatology. Limited clinical data are available on the acute and long-term effect of neonatal exposure to CPAP on the lung. Given the restricted clinical data, newborn animal models have been used to study the influence of CPAP on lung structure and function. The findings of animal studies can guide neonatal care and improve the use of CPAP. <b><i>Methods:</i></b> A systematic review of electronic databases (Medline, Embase, and Cinahl) was performed using the medical subject heading terms, “CPAP” or “continuous positive airway pressure” and “animals” and “newborn.” Abstracts were screened for inclusion using predetermined eligibility criteria. <b><i>Results:</i></b> In total, 235 abstracts were identified and screened for inclusion. Of these, 21 papers were included. Large (<i>N</i> = 18) and small (<i>N</i> = 3) animal models investigated the effects of CPAP. Pulmonary outcomes included gas exchange, lung structure and function, surfactant metabolism, lung inflammation and injury, and the effect of intrapulmonary therapy. Compared to mechanical ventilation, CPAP improves lung function, evokes less lung injury, and does not disrupt alveolar development. Surfactant administration combined with CPAP further improves respiratory outcomes. Of concern are findings that CPAP may increase airway reactivity. <b><i>Discussion/Conclusion:</i></b> CPAP offers numerous advantages over mechanical ventilation for the immature lung. The combination of CPAP and exogenous surfactant administration offers further pulmonary benefit.
DOI: 10.3535/423-jkz-ry5
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jc5-97s-zc3
title: †Rhynchotrema Hall, 1860

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.16682605.v1
title: Data1.csv

description: Summary dataset including the identification and total length of the predator <i>Odontobutis obscura</i> (ID_pred and TL_pred, respectively), the total length of the prey <i>Anguilla japonica</i> (TL_prey), whether the prey was captured (1: non-captured; 0: captured), whether the captured prey escaped via the gill (1: escaped; 0: swallowed), body part initially attacked (Attack, H: head; B: body; T: tail), time taken from the capture to escape via the gill (Time), and survival for 48 h (Survial_48, 1: survival; 0: death).
DOI: 10.6084/m9.figshare.21511677.v8
title: Characteristics of immune cell infiltration in inflamed mucosa of ulcerative colitis patients, hub gene candidates and key pathways in intestinal macrophage.

description: Tissue RNA was isolated from fresh mouse colon sample by Trizol reagent. Total RNA (1 µg) was reverse-transcribed using a reverse transcriptase kit (TakaRa, cat. RR036A-1, Tokyo, Japan). Hieff® qPCR SYBR Green Master Mix (Yeasen Biotechnolog, cat. 11201ES03, Shanghai, China) was used for Real-time qPCR. The comparative cycle threshold (Ct) method (2−ΔΔCT) was used to calculate relative expression, β-actin was used as the internal reference. We evaluated immunostaining by multiplying the intensity score and proportion score. Intensity score according to the intensity of cell staining: 0 for no positive staining (negative), 1 for light yellow (weakly positive), 2 for brown (positive) and 3 for dark brown (strongly positive). Proportion score according to the percentage of positive cells: 1 for ≤25%, 2 for 26%-50%, 3 for 51%-75% and 4 points for &gt; 75%.
DOI: 10.3535/lpl-psg-zha
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mby-gx3-5nt
title: †Atrypa Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25402/btn.24279724.v1
title: Supplementary Table S3 - Restriction enzymes used for cloning: PlayBack cloning: simple, reversible, cost-effective cloning for the combinatorial assembly of complex expression constructs

description: Supplementary tables
DOI: 10.3535/14x-rjh-lt2
title: †Atrypa Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wfa-s9z-hjb
title: †Atrypa Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gtm-30e-ebh
title: †Meifodia Williams, 1951

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/x84-8gy-cq7
title: †Meifodia Williams, 1951

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28588589.v1
title: Robotically controlled terahertz probe for <i>in vivo</i> skin evaluation: imaging with the PicoBot

description: Development of an <i>in vivo</i> imaging probe for clinical use.
DOI: 10.3535/44v-k27-k88
title: †Meifodia Williams, 1951

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/k6h-m70-6bm
title: †Meifodia Williams, 1951

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/46vj8r9dkx
title: Prediction of immune-related adverse events induced by immune checkpoint inhibitors with a battery of autoantibodies

description: We hypothesized that the presence of autoantibodies may predict the risk of developing immune-related adverse events (irAEs) in patients with cancer receiving immune checkpoint inhibitors (ICIs). We aimed to assess the diagnostic performance of a battery of autoantibodies to predict irAEs in patients with cancer receiving ICIs.
DOI: 10.3535/hal-m33-yl4
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gbs-707-31e
title: †Eospiriferinae Schuchert, 1929

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nx9-n88-5gk
title: †Atrypoidea Gill, 1871

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/15q-8ch-s2j
title: †Meifodia Williams, 1951

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cc3-5es-k1m
title: †Atrypa Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6gk-6ba-ng5
title: †Glassia obovate Sowerby, 1839

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ka2-zvq-24d
title: †Meifodia Williams, 1951

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21404142.v3
title: Imagery-CBM Integration

description: Experiment-related software, analysis scripts, and data for the paper "An experimental test of integrating imagery with approach bias modification for alcohol: A cautionary tale".
DOI: 10.3535/rwn-5bz-j1z
title: †Atrypa Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zj7-06x-2sc
title: †Atrypa Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/h58-yf8-ekx
title: †Glassia obovate Sowerby, 1839

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13627205.v1
title: Additional file 7 of Whole microbial community viability is not quantitatively reflected by propidium monoazide sequencing approach

description: Additional file 6. Relative abundances of several taxa changed significantly after PMA treatment.
DOI: 10.3535/rtw-zm6-tqj
title: †Meifodia Williams, 1951

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tdc-0l0-g94
title: †Atrypa Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mxe-acb-5qg
title: †Glassia Davidson, 1881

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zdx-1qv-hpl
title: †Eospiriferinae Schuchert, 1929

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/hzrfh5x6wz
title: UNITED NATIONS GENERAL ASSEMBLY RESOLUTION 74/301: STEERING THE COURSE OF THE ISRAEL-PALESTINE CONFLICT TOWARD PEACE OR PERSISTENCE

description: On September 17, 2024, the United Nations General Assembly passed Resolution 74/301, adopting the text titled “Advisory opinion of the International Court of Justice on the legal consequences arising from Israel's policies and practices in the Occupied Palestinian Territory, including East Jerusalem, and from the illegality of Israel's continued presence in the Occupied Palestinian Territory." This Resolution calls on Israel to withdraw its troops from Palestine within 12 months. 124 states supported the Resolution, while 14 states voted against it, and 43 abstained from voting. The Resolution requires the removal of Israeli soldiers from Palestinian territory, cessation of new settlements, restitution of confiscated land and property, and the potential return of displaced Palestinians. It additionally urges states to take measures to halt arms supplies to Israel when there are "reasonable grounds to anticipate that they may be utilized in the Occupied Palestinian Territory”. However, Israel greatly opposed the Resolution. The country, through its foreign Spokesman Oren Marmorstein, stated on X that the Resolution is a distorted decision that is disconnected from reality, encourages terrorism, and harms the chances for peace. This opposition signals a possible disregard for the Resolution. To this end, this paper examines past and present United Nations efforts since the Palestinian hostilities began, the binding effect of the United Nations Resolution 74/301, and what that means for the future of the Israel-Palestine conflict. It finds that although resolutions of the United Nations General Assembly are generally not binding, the mechanisms put in place in the Resolution bring a glimpse of hope amidst the hostilities.
DOI: 10.3535/ebp-g06-b8g
title: †Glassia Davidson, 1881

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xsf-yd7-5pq
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bje-h3h-lqk
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14466276.v1
title: Weighted Overlay Inputs

description: Input shapefiles for the Weighted Overlay Lab of UWSP's WATR 391 GIS course.
DOI: 10.3535/2ae-c3q-00j
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7rh-nh8-5nw
title: †Atrypa Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yky-5sx-w1g
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22680892.v1
title: Evolution of antibody immunity following Omicron BA.1 breakthrough infection

description: Longitudinal characterization of monoclonal antibodies isolated following BA.1 breakthrough infection in mRNA-vaccinated donors.
DOI: 10.3535/q24-rlm-kdf
title: †Glassia obovate Sowerby, 1839

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13524497.v1
title: FS66_EDTA_TEanno.gff

description: FS66 whole-genome transposable element annotation by EDTA pipeline in GFF format
DOI: 10.3535/9vt-msw-4w4
title: †Atrypinae Gill, 1871

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/j97-wvb-cle
title: †Atrypa Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pbm-x7v-avf
title: †Meifodia Williams, 1951

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26520640.v1
title: Supplementary tables.docx

description: These are the supplementary tables from the results of the study "Increased Risk of Chronic Kidney Disease After Total Thyroidectomy: A Nationwide Matched Cohort Study".
DOI: 10.17632/bdpyp4chh8
title: Admitting diagnoses for multiple-consult patients

description: Primary admission diagnoses for patients with multiple inpatient dermatology consultations in one year.
DOI: 10.3535/kqx-e8c-3sc
title: †Glassia obovate Sowerby, 1839

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ts6-kl8-hde
title: †Meifodia Williams, 1951

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/e6c-3ga-me6
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/h4x-dgw-dan
title: †Eospiriferinae Schuchert, 1929

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qye-car-q1t
title: †Meifodia Williams, 1951

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.