cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13161170
title: Additional file 12 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 12 Table S10. Expression values of genes upstream of 2,3-oxidosqualene used for analysis in Fig. 6.
DOI: 10.6084/m9.figshare.13161167.v1
title: Additional file 11 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 11 Table S9. Details of molecular docking results of 5 CYPs with probable ligands.
DOI: 10.6084/m9.figshare.13161173
title: Additional file 13 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 13 Table S11. Molecular docking results of candidate proteins in Fig. 6.
DOI: 10.6084/m9.figshare.13161164
title: Additional file 10 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 10 Table S8. Potential active sites identified on the CYP450s.
DOI: 10.6084/m9.figshare.13161167
title: Additional file 11 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 11 Table S9. Details of molecular docking results of 5 CYPs with probable ligands.
DOI: 10.6084/m9.figshare.13161197.v1
title: Additional file 4 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 4 Table S2. The expression value of DEGs from transcriptome of A. indica.
DOI: 10.6084/m9.figshare.13161200.v1
title: Additional file 5 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 5 Table S3. Summary of functional annotations of A. indica.
DOI: 10.6084/m9.figshare.13161173.v1
title: Additional file 13 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 13 Table S11. Molecular docking results of candidate proteins in Fig. 6.
DOI: 10.6084/m9.figshare.13161203.v1
title: Additional file 6 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 6 Table S4. KEGG annotation of unigenes from A. indica.
DOI: 10.6084/m9.figshare.13161191.v1
title: Additional file 2 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 2. Details of proteins used for phylogenetic analysis of OSC, ADH, CYP450, ACT, and EST candidates.
DOI: 10.6084/m9.figshare.13161206.v1
title: Additional file 7 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 7 Table S5. Pathways and number of unigenes related to secondary metabolites in A. indica.
DOI: 10.6084/m9.figshare.13161209.v1
title: Additional file 8 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 8 Table S6. Discovery and expression of unigenes involved in terpenoid backbone biosynthesis in A. indica.
DOI: 10.6084/m9.figshare.13161188.v1
title: Additional file 1 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 1. Genes primers used for Quantitative Real-Time PCR (qRT-PCR) analysis and full-length PCR cloning.
DOI: 10.6084/m9.figshare.13161212.v1
title: Additional file 9 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 9 Table S7. Unigenes involved in the sesquiterpenoid and triterpenoid biosynthesis in A. indica.
DOI: 10.6084/m9.figshare.13161194.v1
title: Additional file 3 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 3 Table S1. Concentration of metabolites in leaf, bark, and seed extract of A. indica.
DOI: 10.6084/m9.figshare.13161194
title: Additional file 3 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 3 Table S1. Concentration of metabolites in leaf, bark, and seed extract of A. indica.
DOI: 10.6084/m9.figshare.13161197
title: Additional file 4 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 4 Table S2. The expression value of DEGs from transcriptome of A. indica.
DOI: 10.6084/m9.figshare.13161170.v1
title: Additional file 12 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 12 Table S10. Expression values of genes upstream of 2,3-oxidosqualene used for analysis in Fig. 6.
DOI: 10.6084/m9.figshare.13161188
title: Additional file 1 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 1. Genes primers used for Quantitative Real-Time PCR (qRT-PCR) analysis and full-length PCR cloning.
DOI: 10.6084/m9.figshare.13161191
title: Additional file 2 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 2. Details of proteins used for phylogenetic analysis of OSC, ADH, CYP450, ACT, and EST candidates.
DOI: 10.6084/m9.figshare.13161215
title: Additional file 1 of Phenotypic and proteomic approaches of the response to iron-limited condition in Staphylococcus lugdunensis

description: Additional file 1: Table S1. List of proteins significantly upregulated and downregulated of growing cell (OD of 1) of S. lugdunensis N920143 incubated in BHI with 350 μM DIP compared to grown in BHI.
DOI: 10.6084/m9.figshare.13161200
title: Additional file 5 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 5 Table S3. Summary of functional annotations of A. indica.
DOI: 10.6084/m9.figshare.13161209
title: Additional file 8 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 8 Table S6. Discovery and expression of unigenes involved in terpenoid backbone biosynthesis in A. indica.
DOI: 10.6084/m9.figshare.13161203
title: Additional file 6 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 6 Table S4. KEGG annotation of unigenes from A. indica.
DOI: 10.6084/m9.figshare.13161212
title: Additional file 9 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 9 Table S7. Unigenes involved in the sesquiterpenoid and triterpenoid biosynthesis in A. indica.
DOI: 10.6084/m9.figshare.13161206
title: Additional file 7 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 7 Table S5. Pathways and number of unigenes related to secondary metabolites in A. indica.
DOI: 10.6084/m9.figshare.13161215.v1
title: Additional file 1 of Phenotypic and proteomic approaches of the response to iron-limited condition in Staphylococcus lugdunensis

description: Additional file 1: Table S1. List of proteins significantly upregulated and downregulated of growing cell (OD of 1) of S. lugdunensis N920143 incubated in BHI with 350 μM DIP compared to grown in BHI.
DOI: 10.6084/m9.figshare.13161227
title: Additional file 1 of Species limits in the Elegant Pitta (Pitta elegans) complex from Wallacea based on bioacoustic and morphometric analysis

description: Additional file 1: Table S1. Summary of morphological measurements of museum specimens for the Elegant Pitta.
DOI: 10.6084/m9.figshare.13161239.v1
title: Additional file 5 of Species limits in the Elegant Pitta (Pitta elegans) complex from Wallacea based on bioacoustic and morphometric analysis

description: Additional file 5: Table S4. Details of recordings and measurements made for territorial calls. Table S5. Details of recordings and measurements made for alarm calls. Table S6. Details of recordings that were excluded from analyses (for instructions on how to read accession numbers and corresponding repositories, see Additional file 5: Table S4).
DOI: 10.6084/m9.figshare.13161236.v1
title: Additional file 4 of Species limits in the Elegant Pitta (Pitta elegans) complex from Wallacea based on bioacoustic and morphometric analysis

description: Additional file 4: Table S3. Photos available from Oriental Bird Images and eBird.org.
DOI: 10.6084/m9.figshare.13161239
title: Additional file 5 of Species limits in the Elegant Pitta (Pitta elegans) complex from Wallacea based on bioacoustic and morphometric analysis

description: Additional file 5: Table S4. Details of recordings and measurements made for territorial calls. Table S5. Details of recordings and measurements made for alarm calls. Table S6. Details of recordings that were excluded from analyses (for instructions on how to read accession numbers and corresponding repositories, see Additional file 5: Table S4).
DOI: 10.6084/m9.figshare.13161227.v1
title: Additional file 1 of Species limits in the Elegant Pitta (Pitta elegans) complex from Wallacea based on bioacoustic and morphometric analysis

description: Additional file 1: Table S1. Summary of morphological measurements of museum specimens for the Elegant Pitta.
DOI: 10.6084/m9.figshare.13161242
title: Additional file 6 of Species limits in the Elegant Pitta (Pitta elegans) complex from Wallacea based on bioacoustic and morphometric analysis

description: Additional file 6: Table S7. Principal component (PC) loadings for PC analysis (PCA) on territorial calls. For information on call parameters, see Methods. Table S8. Principal component (PC) loadings for PC analysis (PCA) on alarm calls. For information on call parameters, see Methods.
DOI: 10.6084/m9.figshare.13161236
title: Additional file 4 of Species limits in the Elegant Pitta (Pitta elegans) complex from Wallacea based on bioacoustic and morphometric analysis

description: Additional file 4: Table S3. Photos available from Oriental Bird Images and eBird.org.
DOI: 10.6084/m9.figshare.13161242.v1
title: Additional file 6 of Species limits in the Elegant Pitta (Pitta elegans) complex from Wallacea based on bioacoustic and morphometric analysis

description: Additional file 6: Table S7. Principal component (PC) loadings for PC analysis (PCA) on territorial calls. For information on call parameters, see Methods. Table S8. Principal component (PC) loadings for PC analysis (PCA) on alarm calls. For information on call parameters, see Methods.
DOI: 10.5286/isis.e.rb1900109-3
title: Commissioning of electrochemical cell for neutron scattering: In-situ study of Li vs mesoporus carbon batteries.

description: There is an urgent need for to provide energy storage solutions in order for the world to switch form it's reliance on fossil fuels to renewable energy. This will allow us to store energy to provide energy at times when there is no wind to turn a wind turbine or no sun to illuminate a solar cell.Lithium-ion batteries provides an electrochemical solution to energy storage which, due to the high energy density is popular in portable applications such as in mobile phones, laptops and electric vehicles. The electrochemical cell to be commissioned in this proposal will allow for the study of many energy materials operando. In this experiment we have chosen to study a lithium ion battery. The range of lengthscales available using our electrochemical cell in combination with NIMROD will allow for us to elucidate the much speculated upon mechanisms of charge storage in the cell.
DOI: 10.6084/m9.figshare.12578348.v2
title: Exchange of spectral effects between the hearts and environment

description: <b>Exchange of spectral effects between the hearts and environment</b><br><b><br></b>This article presents a dynamic mechanism of mutual effects between individuals by hearts and chakras,which are classified as a parapsychological phenomena. This research also has shown explained the mechanism of perceptionandcommunication between each of theperipheral parts of the body in coincides with the heart and brain; andthe impact of each other, so the heart affected by hypocrisy will affect the role of the frontal cortex, which isactiveduring uncertainty. The results observed through the experiment suggest that the recipientindividual's DNA can be re-established by the effectual meditation which resulting either from self-reflectionorif the recipient accepts to communicate with biological informationin the surrounding magnetic fields,that produced by the influential (donor) individual's hearts if certain conditions are achieved suchelectromagnetic affinity.<br>This article was written in Word format and then converted to PDF.<br><br><br>
DOI: 10.6084/m9.figshare.12083979
title: Data summary and code

description: A summary of the results of the experiments
DOI: 10.6084/m9.figshare.12083979.v2
title: Data summary and code

description: A summary of the results of the experiments
DOI: 10.6084/m9.figshare.12083979.v1
title: Data summary and code

description: A summary of the results of the experiments
DOI: 10.5281/zenodo.4153962
title: FIM longitudinal database - paediatric acquired brain injuries

description: Includes functional assessment from 600 patients (age 0-18y), 9 time points, Functional Independence Measure scale. Clinical data include: age at event, sex, Glasgow Coma Scale, Days of coma, Length of stay at first admission, aetiology, need of decompressive craniotomy/neurosurgery, insurgence of epilepsy.
DOI: 10.5281/zenodo.4153961
title: FIM longitudinal database - paediatric acquired brain injuries

description: Includes functional assessment from 600 patients (age 0-18y), 9 time points, Functional Independence Measure scale. Clinical data include: age at event, sex, Glasgow Coma Scale, Days of coma, Length of stay at first admission, aetiology, need of decompressive craniotomy/neurosurgery, insurgence of epilepsy.
DOI: 10.6084/m9.figshare.13161368
title: Additional file 2 of Virtual adaptation of traditional healthcare quality improvement training in response to COVID-19: a rapid narrative review

description: Additional file 2: Quality assessement of included studies.
DOI: 10.6084/m9.figshare.13161368.v1
title: Additional file 2 of Virtual adaptation of traditional healthcare quality improvement training in response to COVID-19: a rapid narrative review

description: Additional file 2: Quality assessement of included studies.
DOI: 10.6084/m9.figshare.13161434.v1
title: Additional file 1 of Experimental determination of evolutionary barriers to horizontal gene transfer

description: Additional file 1. An extended table with all the relevant information on the transferred genes.
DOI: 10.6084/m9.figshare.13161434
title: Additional file 1 of Experimental determination of evolutionary barriers to horizontal gene transfer

description: Additional file 1. An extended table with all the relevant information on the transferred genes.
DOI: 10.6084/m9.figshare.13161437.v1
title: Additional file 2 of Experimental determination of evolutionary barriers to horizontal gene transfer

description: Additional file 2. The selection coefficients data calculated from flow cytometry outputs for all 32 replicates of 44 orthologous genes of S. Typhimurium and E. coli.
DOI: 10.6084/m9.figshare.13161534
title: Additional file 10 of TRIM25 promotes Capicua degradation independently of ERK in the absence of ATXN1L

description: Additional file 10: Table S4 TRIM25 knockdown vs CIC-ATXN1L knockout. A) Comparison of differentially expressed genes: TRIM25 knockdown vs ATXN1L knockout. B) Comparison of differentially expressed genes: TRIM25 knockdown vs CIC knockout.
DOI: 10.6084/m9.figshare.13161534.v1
title: Additional file 10 of TRIM25 promotes Capicua degradation independently of ERK in the absence of ATXN1L

description: Additional file 10: Table S4 TRIM25 knockdown vs CIC-ATXN1L knockout. A) Comparison of differentially expressed genes: TRIM25 knockdown vs ATXN1L knockout. B) Comparison of differentially expressed genes: TRIM25 knockdown vs CIC knockout.
DOI: 10.6084/m9.figshare.13161540
title: Additional file 12 of TRIM25 promotes Capicua degradation independently of ERK in the absence of ATXN1L

description: Additional file 12: Table S5 TRIM25-CIC-ATXN1L gene set enrichment analysis. A) Gene set enrichment analysis of upregulated discordant DE genes shared between TRIM25 vs CIC and TRIM25 vs ATXN1L. B) Gene set enrichment analysis of downregulated discordant DE genes shared between TRIM25 vs CIC and TRIM25 vs ATXN1L.
DOI: 10.6084/m9.figshare.13161540.v1
title: Additional file 12 of TRIM25 promotes Capicua degradation independently of ERK in the absence of ATXN1L

description: Additional file 12: Table S5 TRIM25-CIC-ATXN1L gene set enrichment analysis. A) Gene set enrichment analysis of upregulated discordant DE genes shared between TRIM25 vs CIC and TRIM25 vs ATXN1L. B) Gene set enrichment analysis of downregulated discordant DE genes shared between TRIM25 vs CIC and TRIM25 vs ATXN1L.
DOI: 10.6084/m9.figshare.13161543
title: Additional file 13 of TRIM25 promotes Capicua degradation independently of ERK in the absence of ATXN1L

description: Additional file 13: Table S6 BRCA TRIM25 differential expression analyses. A) Differentially Expressed genes comparing BRCA samples with TRIM25 amplification and BRCA samples with copy number neutral TRIM25. B) Differentially Expressed genes shared between BRCA TRIM25 amp and Type II LGG CIC Del. C) Differentially Expressed genes shared between BRCA TRIM25 amp and PRAD CIC Del. D) Differentially Expressed genes shared between BRCA TRIM25 amp and STAD CIC Del.
DOI: 10.6084/m9.figshare.13161543.v1
title: Additional file 13 of TRIM25 promotes Capicua degradation independently of ERK in the absence of ATXN1L

description: Additional file 13: Table S6 BRCA TRIM25 differential expression analyses. A) Differentially Expressed genes comparing BRCA samples with TRIM25 amplification and BRCA samples with copy number neutral TRIM25. B) Differentially Expressed genes shared between BRCA TRIM25 amp and Type II LGG CIC Del. C) Differentially Expressed genes shared between BRCA TRIM25 amp and PRAD CIC Del. D) Differentially Expressed genes shared between BRCA TRIM25 amp and STAD CIC Del.
DOI: 10.6084/m9.figshare.13161546
title: Additional file 14 of TRIM25 promotes Capicua degradation independently of ERK in the absence of ATXN1L

description: Additional file 14: Table S7 TCGA Gene set enrichment analyses. Gene set enrichment analysis of differentially expressed genes shared and directionally concordant between BRCA TRIM25 amp and Type II LGG/PRAD/STAD CIC Del.
DOI: 10.6084/m9.figshare.13161546.v1
title: Additional file 14 of TRIM25 promotes Capicua degradation independently of ERK in the absence of ATXN1L

description: Additional file 14: Table S7 TCGA Gene set enrichment analyses. Gene set enrichment analysis of differentially expressed genes shared and directionally concordant between BRCA TRIM25 amp and Type II LGG/PRAD/STAD CIC Del.
DOI: 10.6084/m9.figshare.13161549
title: Additional file 15 of TRIM25 promotes Capicua degradation independently of ERK in the absence of ATXN1L

description: Additional file 15: Table S8 Antibodies and Primers. A) Antibody information. B) siRNA sequences. C) Primer sequences.
DOI: 10.6084/m9.figshare.13161549.v1
title: Additional file 15 of TRIM25 promotes Capicua degradation independently of ERK in the absence of ATXN1L

description: Additional file 15: Table S8 Antibodies and Primers. A) Antibody information. B) siRNA sequences. C) Primer sequences.
DOI: 10.6084/m9.figshare.13161552.v1
title: Additional file 16 of TRIM25 promotes Capicua degradation independently of ERK in the absence of ATXN1L

description: Additional file 16: Table S9 TCGA BRCA Sample. TCGA BRCA Samples used for differential expression analysis (Amplfied vs Wildtype).
DOI: 10.6084/m9.figshare.13161555
title: Additional file 17 of TRIM25 promotes Capicua degradation independently of ERK in the absence of ATXN1L

description: Additional file 17: Table S10 Data values. Individual data values for figures where n &lt; 6.
DOI: 10.6084/m9.figshare.13161555.v1
title: Additional file 17 of TRIM25 promotes Capicua degradation independently of ERK in the absence of ATXN1L

description: Additional file 17: Table S10 Data values. Individual data values for figures where n &lt; 6.
DOI: 10.6084/m9.figshare.13161567.v1
title: Additional file 4 of TRIM25 promotes Capicua degradation independently of ERK in the absence of ATXN1L

description: Additional file 4: Table S1 IP-MS result. Proteins identified following CIC IP-MS in ATXN1L-KO NHA cells.
DOI: 10.6084/m9.figshare.13161567
title: Additional file 4 of TRIM25 promotes Capicua degradation independently of ERK in the absence of ATXN1L

description: Additional file 4: Table S1 IP-MS result. Proteins identified following CIC IP-MS in ATXN1L-KO NHA cells.
DOI: 10.6084/m9.figshare.13161579
title: Additional file 8 of TRIM25 promotes Capicua degradation independently of ERK in the absence of ATXN1L

description: Additional file 8: Table S2 TRIM25 differentially expressed genes. Differentially expressed genes identified in siTRIM25 vs siCtrl breast carcinoma cell lines. Data from Walsh et al. study [33].
DOI: 10.6084/m9.figshare.13161579.v1
title: Additional file 8 of TRIM25 promotes Capicua degradation independently of ERK in the absence of ATXN1L

description: Additional file 8: Table S2 TRIM25 differentially expressed genes. Differentially expressed genes identified in siTRIM25 vs siCtrl breast carcinoma cell lines. Data from Walsh et al. study [33].