cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17617/3.osktim
title: Dataset for Northward expansion of westerlies over SE Australia

description: The purpose of this study was twofold. Firstly, we established the antiquity of aeolian sedimentary deposits at two sites (Willandra Lakes, Spring Creek) on the proposed margins of the last glacial maximum (LGM) arid zone of southeastern Australia. We collected sediments by driving stainless steel tubes into exposures of the aeolian deposits and determined their age using single grain and single aliquot quartz optically stimulated luminescence (OSL) dating. We include the relevant OSL data here. Having determined that the deposits in question were of (extended) LGM age, we investigated the likely synoptic conditions responsible for the eastward transport and deposition of these sediments. The second aim of the study involved modelling of the likelihood of aeolian transport by strengthened westerly wind systems during the LGM, compared with the present day. Here we provide wind regime data for the two sites for the present day, based on climate reanalysis using data from the European Centre for Medium Range Weather Forecasting (ECMWF) aided by atmospheric general circulation models (GCMs). We provide the wind regime data for the two sites for the LGM time slice by processing data produced by the MPI-ESM-P model (rlilpl-P experiment). From there we performed dust transport and source footprint analyses for the likelihood of aeolian transported particles arriving at a given site, from a given area, using the Lagrangian particle dispersal model FLEXPART, driven by the respective GCM product synoptic data for the LGM and present day. Our simulations are based on the transport of grain sizes 20, 60 and 120 µm in size. 
KMZ files refer to the sites sampled for the study.
Files beginning with PD_(ERA-INTERIM)... refer to present-day wind roses based on climate reanalysis using the ERA dataset.
Files beginning with LGM_(MPI-ESM-P)... refer to LGM-age wind roses based on data farmed from the MPI-earth system model.
Files beginning with PD_SC and PD_LM refer to results of the Lagrangian footprint analysis of particle size transport under present-day conditions to Spring Creek (SC) and Lake Mungo (LM) in the Willandra Lakes respectively.
Files beginning with LGM_SC and LGM_LM refer to results of the Lagrangian footprint analysis of particle size transport under modelled LGM conditions to Spring Creek (SC) and Lake Mungo (LM) in the Willandra Lakes respectively.
Files including L-EVA1125-1128 in the name provide primary data for the calculation of luminescence ages from the Willandra Lakes.
Files including K1917-1919 in the name provide primary data for the calculation of luminescence ages from Spring Creek.
DOI: 10.17617/3.hoki5i
title: Population Genetics and Signatures of Selection in Early Neolithic European Farmers

description: 1240k genotypes of DER individuals in Eigenstrat format. 
Code for running AIMLESS.
DOI: 10.17617/3.opcilr
title: Digital catalysis DoE

description: AC Archive Id: D53301 &lt;br&gt;
gen_pid: 59617764-138b-491d-9696-16376aafc9d4 &lt;br&gt;
URL: https://ac.archive.fhi.mpg.de/D53301 &lt;br&gt;
DOI: 10.17617/3.xwia1r
title: DLPNO-CCSD(T) calculations for mononuclear Fe complexes

description: Orca output files of DLPNO-CCSD(T) calculations on Fe complexes. Based on these results electronic energy differences between the high- and low-spin state isomers can be computed. Each directory contains results for each of the complexes as numbered in the original research paper.
The coordinates of the complexes are given in the Coordinates.txt file. The output files names are given as follows: 'complex number' x 'Spin State' x 'Reference determinant' x 'NormalPNO = NPNO or TightPNO = TPNO settings' x 'def2TZ = TZ/TZ basis sets combination or def2QZ = QZ/TZ'. For example 1x2AxB3LYPxNPNO6T1xdef2TZ.mpi8.out is a DLPNO-CCSD(T) calculation of complex 1, with Ms=2 i.e. low-spin 2^LS state, starting from a B3LYP determinant, using NormalPNO settings with TCutPNO value 1.0*10^(-6) (= NPNO6) and with the TZ/TZ basis set combination.
description: Orca, 5
DOI: 10.17617/3.amiaie
title: Testing hypotheses of a coevolutionary key innovation reveals a complex detoxification machinery involved in defusing the mustard oil bomb
DOI: 10.17617/3.2qcfqp
title: Data from: Visual recognition of social signals by a tecto-thalamic neural circuit

description: This data set contains the raw data needed to reproduce the figures presented in the paper "Visual recognition of social signals by a tecto-thalamic neural circuit".

Johannes M. Kappel, Dominique Förster, Katja Slangewal, Inbal Shainer, Fabian Svara, Joseph C. Donovan, Shachar Sherman, Michal Januszewski, Herwig Baier*, Johannes Larsch*

Nature 2022. 

Analysis code and a bioRxiv preprint of this work are also available:
https://bitbucket.org/mpinbaierlab/kappeletal2022
DOI: 10.17617/3.a4r4kr
title: Supplementary file_Liver Gpr182 mCherry F4/80 co staining

description: For analysis of mCherry reporter fluorescence and F4/80 staining, mice were sacrificed by CO2 and perfused with 20 mL PBS through the left ventricle, followed by 4% PFA in PBS. After perfusion, the liver was postfixed in PFA 4% for 16 h at 4°C. After fixation, the liver was washed at least three times with PBS and transferred to PBS containing 30% (wt/vol) sucrose at 4 °C for 24 h. A piece of liver was then embedded in optimal cutting temperature (OCT) compound and stored at −80 °C until further processing. OCT blocks were sectioned using cryostat, and 150 µm sections were collected in 2 mL tubes containing PBS and further washed 3 times more with PBS. Sections were then permeabilized and blocked with PBS triton 0.5% Horse serum 5% for 1h with gentle rocking. After three washes with antibody diluent (PBS containing 0.3% Triton X-100 and 5% horse serum) for 5 min each, sections were incubated for 2 overnight at 4°C with anti F4/80 rat monoclonal antibody (1:100; Biorad MCA497R, clone Cl:A3-1) in antibody diluent. After five washes of 30 min each with antibody diluent, sections were incubated for 2 overnight at 4°C with AlexaFluor-488 conjugated secondary antibodies (1:500, Thermofisher, A21208) in antibody diluent containing 4′,6-diamidino-2-phenylindole (DAPI, 1:1,000). After five washes of 30 min each with antibody diluent, sections were cleared by incubation for 1 hour in ScaleSQ2 at 37°C (Hama et al.) followed by 1 hour in ScaleS4 solution at room temperature with gentle rocking (Hama et al.). The sections were then mounted to microscope slide with ScaleS4 solution and covered with a coverslip. The sections were imaged with a Zeiss laser scanning microscope (LSM) 880 confocal microscopes equipped with a LD LCI Plan-Apochromat 63x/1.2 Imm Korr DIC M27 objective. In order to reconstruct 3D volumetric images, several z-stack (0.49 µm voxel depth) were recorded to span a total of 30 µm deep. Images were then processed and 3D-rendered with FIJI distribution of ImageJ (v1.53f51). 
References
Hama H, Hioki H, Namiki K, Hoshida T, Kurokawa H, Ishidate F, Kaneko T, Akagi T, Saito T, Saido T, Miyawaki A. ScaleS: an optical clearing palette for biological imaging. Nat Neurosci. 2015 Oct;18(10):1518-29. doi: 10.1038/nn.4107. Epub 2015 Sep 14. PMID: 26368944.
DOI: 10.17617/3.ovao6r
title: Finger sliding interactions with 3D contact force

description: Humans need to accurately process the contact forces that arise as they perform everyday haptic interactions such as sliding the fingers along a surface to feel for bumps, sticky regions, or other irregularities. Several different mechanisms are possible for how the forces on the skin could be represented and integrated in such interactions. In this study, we used a force-controlled robotic platform and simultaneous ultrasonic modulation of the finger-surface friction to independently manipulate the normal and tangential forces during passive haptic stimulation by a flat surface. To assess whether the contact pressure on their finger had briefly increased or decreased during individual trials in this broad stimulus set, participants did not rely solely on either the normal force or the tangential force. Instead, they integrated tactile cues induced by both components. Support-vector-machine analysis classified physical trial data with up to 75% accuracy and suggested a linear perceptual mechanism. In addition, the change in the amplitude of the force vector predicted participants’ responses better than the change of the coefficient of dynamic friction, suggesting that intensive tactile cues are meaningful in this task. These results provide novel insights about how normal and tangential force shape the perception of tactile contact.
DOI: 10.21233/kez1-ww58
title: Jinchuan testate amoebae surface sample dataset

description: Raw data for the Jinchuan testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.4zqnbk
title: Soil extract medium for Loxodes culture

description: Chemical composition of soil extract medium for cultivation of ciliates, and cell count data for growth rates of ciliates grown in this medium.

Refer to README for more information.
DOI: 10.17617/3.cytbe3
title: HapDef: super-resolved large scale haptic system using strain gauges
DOI: 10.17617/3.jqhcjy
title: Dynamical fractal and anomalous noise in clean magnetic crystal
DOI: 10.17617/3.duy0ld
title: Dataset regarding "How relevant is climate change research for climate change policy? An empirical analysis based on Overton data"
DOI: 10.17617/3.svh2bt
title: Fotothek Bibliotheca Hertziana Max-Planck-Institut für Kunstgeschichte 320px static derivates research dataset

description: Pre-filtered Dataset of static derivate images. Contains only images 
- catalogued in the Fototeca
- marked as "freigegeben"
Files are jpg with a maximum h/w of 320px.
A list of all available catalogued foto identifiers is also provided in a csv file.
Digital photos in source archive (Quellen) of the Fototeca are currently 822924 which includes different formats and derivates. Static derivates are available via webservers are 623655 in 320px max and 335198 in 2048px max.
The catalogued photos (a8450), including not-yet-digitized ones, are 413386, of which 316399 have a foto-id (a8540). Among these only those with a foto-id longer than 6 digits are considered, to avoid placeholders are, hence: 314488. These are listed in the csv table. Out of this group those marked as "freigegeben" are 119960 and not "freigegeben" are 194528. Within the "freigegeben" a 320px derivate is available for 95599. Distinct values of the foto-id of "freigegeben" with a 320px derivate available are: 93788. These are into this dataset as a tar file.
DOI: 10.17617/3.gkrxcn
title: Data Set - Black carbon aerosol reductions during COVID-19 confinement quantified by aircraft measurements over Europe

description: The data was analyzed in the publication by Krüger et al. 2022 (https://acp.copernicus.org/preprints/acp-2021-1100/). The study shows the decrease in atmospheric black carbon aerosol during the first COIVD-19 lockdown in 2020. The dataset consists of aircraft BC data sampled over Europe in 2017 (https://acp.copernicus.org/articles/22/5877/2022/) and 2020 (https://journals.ametsoc.org/view/journals/bams/aop/BAMS-D-21-0012.1/BAMS-D-21-0012.1.xml?tab_body=pdf) as well as EMAC model results for the same periods along the HALO flight tracks.
description: Paul-Scherrer Institute (PSI) SP2 toolkit
description: e ECHAM/MESSy Atmopheric Chemistry (EMAC), https://www.messy-interface.org/
DOI: 10.17617/3.lf8h2q
title: Dataset – Contact evolution of dry and hydrated fingertips at initial touch

description: Pressing the fingertips into surfaces causes skin deformations that enable humans to
grip objects and sense their physical properties. This process involves intricate finger
geometry, non-uniform tissue properties, and moisture, complicating the underlying
contact mechanics. Here we explore the initial contact evolution of dry and hydrated
fingers to isolate the roles of governing physical factors. Two participants gradually
pressed an index finger on a glass surface under three moisture conditions: dry, water-
hydrated, and glycerin-hydrated. Gross and real contact area were optically measured
over time, revealing that glycerin hydration produced strikingly higher real contact area,
while gross contact area was similar for all conditions. To elucidate the causes for this
phenomenon, we investigated the combined effects of tissue elasticity, skin-surface
friction, and fingerprint ridges on contact area using simulation. Our analyses show the
dominant influence of elastic modulus over friction and an unusual contact
phenomenon, which we call friction-induced hinging.
description: MATLAB, R2018a
DOI: 10.17617/3.pirfa2
title: Dataset for: A condensate dynamic instability orchestrates actomyosin cortex activation
DOI: 10.17617/3.emrzgh
title: Data for: Quantifying the movement, behaviour and environmental context of group-living animals using drones and computer vision

description: This is data used for the worked examples in the paper "Quantifying the movement, behaviour and environmental context of group-living animals using drones and computer vision", published in the Journal of Animal Ecology.
DOI: 10.17617/3.qlwr38
title: 18S rRNA phylogeny for ciliate single cell environmental samples

description: See README for more information
DOI: 10.17617/3.42nmn2
title: Clunio Marinus Reference Genome
DOI: 10.17617/3.2oemsk
title: Deetect: a deep learning based image analysis tool for quantification of adherent cell populations on oxygenator membranes after extracorporeal membrane oxygenation therapy

description: A phosphorylcholine-coated (PC) polymethylpentene (PMP)-MOs (Maquet PLS-I) was examined for cell colonization after long-term patient support (&gt;24h) using confocal laser scanning microscopy (Leica SP5/40X) and fluorescence staining of adhering cells via 4',6-Diamidino-2-phenylindol (DAPI). The cell colonization was found to be localized at certain predilection sites: hollow fibers and hollow-fiber connecting warps.
DOI: 10.17617/3.803omm
title: Data for "B+1-correction of MT saturation maps optimized for 7T postmortem MRI of the brain"
DOI: 10.21233/sha3-aq34
title: Awl Site [45BR4562] vertebrate fauna dataset

description: Raw data for the Awl Site [45BR4562] vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.t5luim
title: Data - Flexible energy-saving strategies in female temperate-zone bats
DOI: 10.17617/3.2pnzx2
title: Dietzer et al-datafiles

description: CSV files used for model in the paper "Downstream effects of low insect abundance over meadows on bats" bei Melina Dietzer and co-authors
DOI: 10.17617/3.xwmbkt
title: Dataset accessions for comparative analysis of ciliate genetic codes

description: See README.md for more information
DOI: 10.17617/3.iasdty
title: Code for "A new method for characterising shared space use networks using animal trapping data"

description: Code to run all of the simulations described in the manuscript.
DOI: 10.17617/3.3o1zm2
title: The Superconductivity of Sr2RuO4 Under c-Axis Uniaxial Stress
DOI: 10.17617/3.ehgg4j
title: Data and Code for "Is bin-opening in cockatoos leading to an innovation arms race with humans?"
DOI: 10.17617/3.1xtsr6
title: Code for "ICON-Sapphire: simulating the components of the Earth System and their interactions at kilometer and subkilometer scales"

description: This dataset provides the model source code for the simulations described in the publication "ICON-Sapphire: simulating the components of the Earth System and their interactions at kilometer and subkilometer scales" submitted to Geoscientific Model Development (GMD)
DOI: 10.17617/3.r4fjqg
title: Molecular dynamics simulations of α-synuclein protofilament structure models without and with anle138b
DOI: 10.17617/3.yyistc
title: Dataset for: An endosomal tether undergoes an entropic collapse to bring vesicles together

description: Raw data files from EM rotary shadowing experiments of Early Endosome Antigen 1 (EEA1) under various conditions. The datasets have been obtained for the study of Murray & Jahnel et al., "An endosomal tether undergoes an entropic collapse to bring vesicles together", Nature, 2016. Different datasets correspond to different mutants of EEA1 and different conditions, for example, the presence of the binding partner, the small GTPase Rab5. Each data directory corresponds to a different condition. Author affiliations provided with the Metadata are 1) current affiliation and 2) affiliation at the time of data collection and analysis.
DOI: 10.17617/3.f9bwou
title: Evolution of increased complexity and specificity at the dawn of Form I Rubiscos

description: Mass photometry rawdata, Michaelis-Menten kinetic datasets, phylogenetic trees, sequence alignments and ancestral sequence information (reconstruction and sequences)
DOI: 10.17617/3.a3mb7z
title: Data For: Systematic Atomic Structure Datasets for Machine Learning Potentials: Application to Defects in Magnesium

description: DFT Training Data for fitting Moment Tensor Potentials. 
See https://github.com/eisenforschung/magnesium-mtp-training-data for further notes and usage examples.
description: VASP, 5.4.4
description: Lammps, 29Sept21
description: pyiron, 0.4.6
DOI: 10.17617/3.aevvzv
title: Sex- and tissue-specific expression of chemosensory receptor genes in a hawkmoth

description: This dataset contains gene expression data of chemosensory genes in nine different tissues (antennae, labial palps, proboscis, forelegs, midlegs, hindlegs, forewings, hindiwngs, and ovipositor) of the hawkmoth Manduca sexta. The data was generated using NanoString platform.
DOI: 10.17617/3.zt6k7p
title: A Real-Robot Dataset for Assessing Transferability of Learned Dynamics Models

description: In the context of model-based reinforcement learning and control, a large number of methods for learning system dynamics have been proposed in recent years. The purpose of these learned models is to synthesize new control policies. An important open question is how robust current dynamics-learning methods are to shifts in the data distribution due to changes in the control policy. We present a real-robot dataset which allows to systematically investigate this question. This dataset contains trajectories of a 3 degrees-of-freedom (DOF) robot being controlled by a diverse set of policies. Software to reproduce our benchmark of a few widely-used dynamics-learning methods using the proposed dataset is available in our &lt;a href="https://github.com/rr-learning/transferable_dynamics_dataset"&gt;code repository&lt;/a&gt;
description: https://github.com/rr-learning/transferable_dynamics_dataset
DOI: 10.21233/arpy-r152
title: Giblin's Farm water chemistry dataset

description: Raw data for the Giblin's Farm water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.bq2pz9
title: Data of: Gastrocnemius and Power Amplifier Soleus Spring-Tendons Achieve Fast Human-like Walking in a Bipedal Robot

description: Control code, experimental data, visualization code, and CAD files for the paper: Gastrocnemius and Power Amplifier Soleus Spring-Tendons Achieve Fast Human-like Walking in a Bipedal Robot
description: Solidworks, 2021 SP4.1
DOI: 10.17617/3.izwnz1
title: Dynamic of speech
DOI: 10.17617/3.90c1nd
title: Pleurodeles waltl genome assembly

description: Genome assembly and annotation of the Iberian ribbed newt, Pleurodeles waltl
DOI: 10.17617/3.ydsj2c
title: Ratiometric Segmentation Script

description: ImageJ plugin for cell membrane segmentation of multi-channel confocal images, written by Giovanni Cardone (MPI of Biochemistry, Imaging Facility).
DOI: 10.17617/3.mzgfpm
title: MPG Geomagnetic field forecast from 2020 to 2120

description: Geomagnetic field forecast from 2020 to 2120, based on the assimilation of COV-OBS.x1 (Gillet et al, 2015) and Kalmag (Baerenzung et al, 2020) by an ensemble of 3D dynamo simulations. The forecast was issued in the context of the IGRF-13 for geomagnetic field forecast between 2020-2025, and published in Sanchez et al (2020, EPS).
DOI: 10.17617/3.bhn9a4
title: Swaying oscillations in RBC - Kupka et al.

description: Pr=0.01
DOI: 10.17617/3.kjwdrb
title: Atomistic Grain-Boundary Model of the Solid-State-Electrolyte LATP

description: This data set contains atomistic model structures related to the publication DOI: 10.1002/aenm.202100707 .
DOI: 10.17617/3.fgfqzg
title: Dataset for: Improving scalability of Earth System Models through coarse-grained component concurrency - a case study with the ICON v2.6.5 modelling system

description: This dataset contains the ICON code, the experiments run scripts, and the experiments time results and the derived scaling values, for the article: "Improving scalability of Earth System Models through coarse-grained component concurrency - a case study with the ICON v2.6.5 modelling system".
&lt;br&gt;

Note that the ICON code is provided here only for documentation purposes of the above study. For any other use follow the instructions at https://code.mpimet.mpg.de/projects/iconpublic/wiki/How%20to%20obtain%20the%20model%20code
description: ICON, 2.6.5
DOI: 10.17617/3.vzhsxs
title: Model structures for glass phases of the solid-state electrolyte LPS

description: This dataset contains several representative glass structures for stoichiometries Li&lt;sub&gt;3&lt;/sub&gt;PS&lt;sub&gt;4&lt;/sub&gt;, Li&lt;sub&gt;4&lt;/sub&gt;P&lt;sub&gt;2&lt;/sub&gt;S&lt;sub&gt;7&lt;/sub&gt;, and Li&lt;sub&gt;7&lt;/sub&gt;P&lt;sub&gt;3&lt;/sub&gt;S&lt;sub&gt;11&lt;/sub&gt; from the class of Li&lt;sub&gt;2&lt;/sub&gt;S-P&lt;sub&gt;2&lt;/sub&gt;S&lt;sub&gt;5&lt;/sub&gt; (LPS) solid-state electrolytes (SSE).
description: QUIP, 0.9.9 (2021)
description: LAMMPS, Stable Release, 23 Jun 2022
DOI: 10.17617/3.b2aknu
title: Water Channels in Fully Hydrated Cyanobacterial Photosystem II

description: Selected structures (in the Protein Data Bank format) from molecular dynamics simulations depicting water channels within fully hydrated Photosystem II. All structures are based on the 3WU2 PSII model, but with fully completed/remodeled protein sequence and cofactor assignment. The PSII models are embedded in the lipid bilayer and solvent box with physiological counterion concentration that were used in the MD simulations.
DOI: 10.17617/3.eglblp
title: Dataset for: Long-term effects of noise pollution on the avian dawn chorus: a natural experiment facilitated by the closure of an international airport
DOI: 10.17617/3.pxzf2t
title: Using relative brain size as predictor variable: serious pitfalls and solutions

description: This repo is associated with the following article:

Smeele, Simeon Q. "Using relative brain size as predictor variable: serious pitfalls and solutions". Ecology and Evolution
description: R, 4.1.0
description: Stan