cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3602174_d1.v1
title: Additional file 8: Table S8. of Comparative Leaf and Root Transcriptomic Analysis of two Rice Japonica Cultivars Reveals Major Differences in the Root Early Response to Osmotic Stress

description: List of DEGs specifically modulated in 3Â h-treated root samples of Eurosis or Loto. (XLSX 184 kb)
DOI: 10.6084/m9.figshare.c.3602174_d2.v1
title: Additional file 7: Table S7. of Comparative Leaf and Root Transcriptomic Analysis of two Rice Japonica Cultivars Reveals Major Differences in the Root Early Response to Osmotic Stress

description: List of enriched GO terms for the contrasts with accompanying enrichment p-values as resulting from goseq analysis. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.c.3602162_d5.v1
title: Additional file 5: Table S2. of Alteration of actin dependent signaling pathways associated with membrane microdomains in hyperlipidemia

description: (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3602174_d3.v1
title: Additional file 2: Table S2. of Comparative Leaf and Root Transcriptomic Analysis of two Rice Japonica Cultivars Reveals Major Differences in the Root Early Response to Osmotic Stress

description: Pearson correlation coefficients of samples. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3602174_d5.v1
title: Additional file 6: Table S6. of Comparative Leaf and Root Transcriptomic Analysis of two Rice Japonica Cultivars Reveals Major Differences in the Root Early Response to Osmotic Stress

description: List of common GO terms. List of GO terms common in all of the tissues and treatments, in all of the root samples or in all of the leaf samples. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3602174_d6.v1
title: Additional file 5: Table S5. of Comparative Leaf and Root Transcriptomic Analysis of two Rice Japonica Cultivars Reveals Major Differences in the Root Early Response to Osmotic Stress

description: List of DEGs showing contrasting regulation between Eurosis and Loto samples. (XLSX 12 kb)
DOI: 10.15468/dl.5dz9pz
title: Occurrence Download

description: A dataset containing 5387 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Korea (Democratic People’s Republic of), Japan, China, Russian Federation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Limosa lapponica (Linnaeus, 1758)",
 "Year 2012-2024"
 ]
}

 The dataset includes 5387 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037519-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3602174_d8.v1
title: Additional file 4: Table S4. of Comparative Leaf and Root Transcriptomic Analysis of two Rice Japonica Cultivars Reveals Major Differences in the Root Early Response to Osmotic Stress

description: List of DEGs in all of the analysed samples. (XLSX 3592 kb)
DOI: 10.6084/m9.figshare.c.3602198_d1.v1
title: Additional file 1: Table S1. of Comparison of circulating lipid profiles between fasting humans and three animal species used in preclinical studies: mice, rats and rabbits

description: Normalized peak height of phosphoglycerolipids, sphingolipids, and neutral lipids in the plasma of all the mammals. (XLSX 112 kb)
DOI: 10.6084/m9.figshare.c.3602174_d9.v1
title: Additional file 9: Table S9. of Comparative Leaf and Root Transcriptomic Analysis of two Rice Japonica Cultivars Reveals Major Differences in the Root Early Response to Osmotic Stress

description: List of DEGs belonging to MapMan categories “Ethylene”, “Transcription Factor”, “Enzyme families - Cytochrome P450.” (XLSX 88 kb)
DOI: 10.6084/m9.figshare.c.3602213_d11.v1
title: Additional file 21: Table S8. of Quantitative proteomics of the tobacco pollen tube secretome identifies novel pollen tube guidance proteins important for fertilization

description: List of primers used in this study. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3602273_d1.v1
title: Additional file 1 of Identification of in vitro and in vivo disconnects using transcriptomic data

description: Genes of top 10 biclusters in vitro . List of disconnected genes that appeared in the top 10 biclusters in vitro.
DOI: 10.6084/m9.figshare.c.3602273_d2.v1
title: Additional file 3 of Identification of in vitro and in vivo disconnects using transcriptomic data

description: Genes of top 10 biclusters in vivo . List of disconnected genes that appeared in the top 10 biclusters in vivo.
DOI: 10.6084/m9.figshare.c.3602279_d1.v1
title: Additional file 2: of Deep sequencing of Danish Holstein dairy cattle for variant detection and insight into potential loss-of-function variants in protein coding genes

description: Numbers of genetic variants identified per animal. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3602213_d14.v1
title: Additional file 18: Table S7. of Quantitative proteomics of the tobacco pollen tube secretome identifies novel pollen tube guidance proteins important for fertilization

description: Overlap between the tobacco semi-in vivo pollen tube secretome and the proteome of olive pollen tube-secreted nanovesicle exosomes. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3602273_d3.v1
title: Additional file 6 of Identification of in vitro and in vivo disconnects using transcriptomic data

description: Integrated results - sulindac. List of disconnected genes for sulindac organized in three groups (see Discussion).
DOI: 10.6084/m9.figshare.c.3602279_d2.v1
title: Additional file 6: of Deep sequencing of Danish Holstein dairy cattle for variant detection and insight into potential loss-of-function variants in protein coding genes

description: Gene ontology terms significantly ( P â
DOI: 10.6084/m9.figshare.c.3602273_d4.v1
title: Additional file 4 of Identification of in vitro and in vivo disconnects using transcriptomic data

description: Top 10 biclusters in vivo . List of top 10 biclusters in vivo with all the disconnected genes and compounds that are bicluster members.
DOI: 10.6084/m9.figshare.c.3602318_d1.v1
title: Additional file 11: Table S8. of Genomic analysis of the molecular neuropathology of tuberous sclerosis using a human stem cell model

description: Gene sets and associated genes that show after mTOR treatment a reversal of the change in expression detected in untreated TSC2 deletion cells (related to Fig.Â 4b). (XLSX 25.8 kb)
DOI: 10.6084/m9.figshare.c.3602324_d1.v1
title: Additional file 1: of The successful accomplishment of nutritional and clinical outcomes via the implementation of a multidisciplinary nutrition support team in the neonatal intensive care unit

description: Raw_data_NST. (XLSX 2379Â kb)
DOI: 10.6084/m9.figshare.c.3602279_d11.v1
title: Additional file 7: of Deep sequencing of Danish Holstein dairy cattle for variant detection and insight into potential loss-of-function variants in protein coding genes

description: List of LoF variants used in validating genotyping. This table also presents the list of primers used in the custom SNP genotyping assay and primers used in genotyping of frameshift indels by size determination. For frameshift indels forward primers were 5â ˛ modified with reporter dyes (dyes are indicated in the parenthesis). (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3602318_d2.v1
title: Additional file 6: Table S4. of Genomic analysis of the molecular neuropathology of tuberous sclerosis using a human stem cell model

description: Gene ontology term enrichments for RNA-Seq data from differentiated TSC2 deletion cell lines and microarray data of patient SEGAs (related to Fig.Â 2f). (XLSX 27.7 kb)
DOI: 10.6084/m9.figshare.c.3602333_d1.v1
title: MOESM1 of Vemurafenib-resistant BRAF selects alternative branch points different from its wild-type BRAF in intron 8 for RNA splicing

description: Additional file 1: Table S1. BRAF primers used in this study.
DOI: 10.6084/m9.figshare.c.3602345_d1.v1
title: Additional file 4: Table S4. of Ridaforolimus (MK-8669) synergizes with Dalotuzumab (MK-0646) in hormone-sensitive breast cancer

description: Statistical analysis of final tumor volume for samples depicted in Fig.Â 5. (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.c.3602342_d2.v1
title: MOESM6 of Molecular phylogeny, morphology and life-history comparisons within Circus cyaneus reveal the presence of two distinct evolutionary lineages

description: Additional file 6: S2. Circus cyaneus Museum measurements. Individual measurements for each of the 43 Circus cyaneus museum specimens of the forms cyaneus and hudsonius. hudsonius collection locations are given as standard US state and Canadian province abbreviations.
DOI: 10.6084/m9.figshare.c.3602345_d2.v1
title: Additional file 5: Table S5. of Ridaforolimus (MK-8669) synergizes with Dalotuzumab (MK-0646) in hormone-sensitive breast cancer

description: Gene expression values for all treatment cohorts expressed as relative fold-change compared to control. (XLSX 623Â kb)
DOI: 10.6084/m9.figshare.c.3602351_d1.v1
title: Additional file 1: of A comprehensive survey of the mutagenic impact of common cancer cytotoxics

description: Supplementary Tables. Table S1 lists the number of SNV and indel mutations found in each individual sequenced cell clone; Table S2 provides SNV counts for each clone in a triplet context; Tables S3 and S4 contain dinucleotide mutation counts and indel sequence context for each cisplatin-treated clone, respectively; Table S5 provides the trinucleotide frequencies in the chicken and human genome; Table S6 contains numerical data for Pearson correlation and cosine similarity between observed triplet mutation patterns and COSMIC signatures. (XLSX 97 kb)
DOI: 10.6084/m9.figshare.c.3602318_d5.v1
title: Additional file 3: Table S1. of Genomic analysis of the molecular neuropathology of tuberous sclerosis using a human stem cell model

description: RNA-Seq and ribosome profiling data of differentiated TSC2 wild-type, heterozygous, and homozygous deletion cell lines (related to Figs.Â 2 and 3). (XLSX 6.88 mb)
DOI: 10.6084/m9.figshare.c.3602345_d3.v1
title: Additional file 3: Table S3. of Ridaforolimus (MK-8669) synergizes with Dalotuzumab (MK-0646) in hormone-sensitive breast cancer

description: Statistical analysis of IRB expression for samples depicted in Fig.Â 1. (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.c.3602318_d11.v1
title: Additional file 9: Table S6. of Genomic analysis of the molecular neuropathology of tuberous sclerosis using a human stem cell model

description: Gene ontology term enrichments for ribosome profiling data (related to Fig.Â 3f). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3602375_d1.v1
title: Additional file 1: Table S1. of A cultured approach to canine urothelial carcinoma: molecular characterization of five cell lines

description: Comparisons analysis of primary tumors and cell lines. oaCGH data from primary tumors and cell lines were simultaneously analyzed and compared using the Comparisons algorithm (Nexus Copy Number, Biodiscovery). Few aberrant regions were evident in only the primary tumors or the cell lines without being present in the other. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3602369_d2.v1
title: Additional file 2: Table S2. of Acute appendicitis: transcript profiling of blood identifies promising biomarkers and potential underlying processes

description: Clinical Information on all Patients Analyzed. Describes the age, gender, race, body mass index (BMI), smoking, white blood cell count (WBC), pathology of the appendix, computed tomography (CT) results, and final diagnosis of the patients included in the final analysis. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3602390_d1.v1
title: Additional file 2: of 
                     Arabidopsis thaliana population analysis reveals high plasticity of the genomic region spanning MSH2, AT3G18530 and AT3G18535 genes and provides evidence for NAHR-driven recurrent CNV events occurring in this location

description: Table S1. List of Arabidopsis accessions and gene copy numbers determined in MLPA- and ddPCR-based study. (XLSX 81Â kb)
DOI: 10.6084/m9.figshare.c.3602369_d3.v1
title: Additional file 3: Table S3. of Acute appendicitis: transcript profiling of blood identifies promising biomarkers and potential underlying processes

description: Appendix List of Primers. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3602390_d3.v1
title: Additional file 3: of 
                     Arabidopsis thaliana population analysis reveals high plasticity of the genomic region spanning MSH2, AT3G18530 and AT3G18535 genes and provides evidence for NAHR-driven recurrent CNV events occurring in this location

description: Matrix data file with SNP data for 154 accessions, used for the construction of phylogenetic network. (TXT 16Â kb)
DOI: 10.6084/m9.figshare.c.3602444_d2.v1
title: Additional file 6: of Age-related accrual of methylomic variability is linked to fundamental ageing mechanisms

description: Identified aVMRs with nearest protein coding gene. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3602441_d3.v1
title: Additional file 8: File S3. of Global transcriptional analysis suggests Lasiodiplodia theobromae pathogenicity factors involved in modulation of grapevine defensive response

description: Functional annotation for transcripts that showed Blastp hits on Pathogen Host Interaction database, that were identified as differentially expressed and that present secretion signal on its encoding open reading frames. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3602441_d4.v1
title: Additional file 10: File S5. of Global transcriptional analysis suggests Lasiodiplodia theobromae pathogenicity factors involved in modulation of grapevine defensive response

description: List of genes with LFC and FDR values for each contrasting condition (XLSX 2599 kb)
DOI: 10.6084/m9.figshare.c.3602444_d4.v1
title: Additional file 8: of Age-related accrual of methylomic variability is linked to fundamental ageing mechanisms

description: Relationship between DNA methylation and gene expression in trans. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3602444_d5.v1
title: Additional file 5: of Age-related accrual of methylomic variability is linked to fundamental ageing mechanisms

description: Relation between DNA methylation and gene expression in cis. (XLSX 119 kb)
DOI: 10.6084/m9.figshare.c.3602444_d6.v1
title: Additional file 2: of Age-related accrual of methylomic variability is linked to fundamental ageing mechanisms

description: List of validated aVMPs and their genomic location (hg19). (XLSX 234 kb)
DOI: 10.15468/dl.ahdye2
title: Occurrence Download

description: A dataset containing 1068 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Korea (Democratic People’s Republic of), Japan, China, Russian Federation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Halcyon pileata (Boddaert, 1783)",
 "Year 2012-2024"
 ]
}

 The dataset includes 1068 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037520-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3602498_d1.v1
title: MOESM1 of Impact of degradable nanowires on long-term brain tissue responses

description: Additional file 1. Excel-file with raw data.
DOI: 10.6084/m9.figshare.c.3602441_d14.v1
title: Additional file 2: Table S1. of Global transcriptional analysis suggests Lasiodiplodia theobromae pathogenicity factors involved in modulation of grapevine defensive response

description: List of primers employed in RT-qPCR. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3602441_d16.v1
title: Additional file 16: File S9. of Global transcriptional analysis suggests Lasiodiplodia theobromae pathogenicity factors involved in modulation of grapevine defensive response

description: Raw blastx output of all transcripts (XLSX 16172 kb)
DOI: 10.6084/m9.figshare.c.3602546_d4.v1
title: MOESM1 of Designing intracellular metabolism for production of target compounds by introducing a heterologous metabolic reaction based on a Synechosystis sp. 6803 genome-scale model

description: Additional file 1: Table S1. List of exogenous metabolic reactions linked to the SyGSM (metabolic reaction number: 1â  5).
DOI: 10.6084/m9.figshare.c.3602576_d1.v1
title: Additional file 2: Table S1. of MiR-21 is required for efficient kidney regeneration in fish

description: Clustered differentially expressed genes after treatment of N. furzeri with gentamicin, antimir-21 orgentamicin/antimir-21. (XLSX 429 kb)
DOI: 10.6084/m9.figshare.c.3602579_d1.v1
title: Additional file 1: of Latitude in sample handling and storage for infant faecal microbiota studies: the elephant in the room?

description: Illumina Miseq expected variation. (XLS 15 kb)
DOI: 10.6084/m9.figshare.c.3602579_d2.v1
title: Additional file 2: of Latitude in sample handling and storage for infant faecal microbiota studies: the elephant in the room?

description: Roche 454 FLX expected variation. (XLS 10 kb)
DOI: 10.6084/m9.figshare.c.3602600_d1.v1
title: Additional file 1: of Plasticity varies with boldness in a weakly-electric fish

description: Datasets and calculated statistics. The file includes: 1) datasets of recordings from preliminary and experimental (novel object and novel environment) tests, and 2) tables with calculated boldness scores and intra-individual variance statistics. (XLSX 15Â kb)
DOI: 10.60656/4a1f5e24201f4232
title: Custom collection of ice water content data from Bucharest, Cabauw, Chilbolton, Galați, Granada, and 12 other sites between 1 and 30 Sep 2023
DOI: 10.15468/dl.46fzwe
title: Occurrence Download

description: A dataset containing 235 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Oxytropis myriophylla (Pall.) DC."
 ]
}

 The dataset includes 235 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037521-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3602627_d2.v1
title: Additional file 2: Table S1. of Complete mitochondrial genomes of living and extinct pigeons revise the timing of the columbiform radiation

description: Divergence times estimates from BEAST, MCMCTREE and Reltime, including minimum and maximum 95 % CI. Node numbers refer to Additional file 1: Figure S1. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3602633_d1.v1
title: Additional file 1: Table 5. of Impact of 3T multiparametric MRI and FDG-PET-CT in the evaluation of occult primary cancer with cervical node metastasis

description: Data collection. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3602693_d4.v1
title: Additional file 5: Table S5. of Bioinformatics approach to predict target genes for dysregulated microRNAs in hepatocellular carcinoma: study on a chemically-induced HCC mouse model

description: List of secondary genes from Genemania involved in liver cancer on the basis of literature (PubMed) review. Excel table presenting 33 out of 59 secondary genes, already described in liver tumor pathogenesis. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3602711_d1.v1
title: MOESM1 of Behavioral and molecular studies of quantitative differences in hygienic behavior in honeybees

description: Additional file 1: Table S1. The design of the microarray experiments that comprise 82 hybridizations.
DOI: 10.6084/m9.figshare.c.3602711_d2.v1
title: MOESM2 of Behavioral and molecular studies of quantitative differences in hygienic behavior in honeybees

description: Additional file 2: Table S2. DEGs associated with hygienic behavior (HB) in the high HB source. A modified t-test was performed on the log-transformed transcription ratios gained from 82 hybridizations between 138 hygienic worker bees and 138 non-hygienic siblings. Oligo Ids, Gene Ids, and Comments are quoted from the UIUC Honey bee oligo 13Â K v1 annotation file (May 2007).
DOI: 10.6084/m9.figshare.c.3602693_d6.v1
title: Additional file 6: Table S6. of Bioinformatics approach to predict target genes for dysregulated microRNAs in hepatocellular carcinoma: study on a chemically-induced HCC mouse model

description: Most significant functional groups obtained from clusterization process by Genemania, regarding 33 secondary genes, most closely related to liver cancer (FDRâ  â ¤0.05). Excel table presenting the 14 most significant cluster extracted by Genemania after selection of the 33 secondary genes. The table shows the false discovery rate and the gene coverage for each cluster. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3602711_d3.v1
title: MOESM3 of Behavioral and molecular studies of quantitative differences in hygienic behavior in honeybees

description: Additional file 3: Table S3. DEGs associated with hygienic behavior (HB) in the low HB source. A modified t-test was performed on the log-transformed transcription ratios gained from 82 hybridizations between 138 hygienic worker bees and 138 non-hygienic siblings. Oligo Ids, Gene Ids, and Comments are quoted from the UIUC Honey bee oligo 13Â K v1 annotation file (May 2007).
DOI: 10.6084/m9.figshare.c.3602720_d1.v1
title: Additional file 4: of Phylogenetic, syntenic, and tissue expression analysis of slc22 genes in zebrafish (Danio rerio)

description: Amino acid sequence motif analysis of zebrafish and human Slc22/SLC22. Identification of characteristic Slc22 amino acid sequences with identified major facilitator superfamily (MFS) motif, amphiphilic solute facilitator (ASF) domain and OAT-specific motif. (XLSX 518 kb)
DOI: 10.6084/m9.figshare.c.3602711_d4.v1
title: MOESM4 of Behavioral and molecular studies of quantitative differences in hygienic behavior in honeybees

description: Additional file 4: Table S4. DEGs associated with the HB sources but not with the behavior. A modified t-test was performed on the log-transformed transcription ratios gained from 82 hybridizations. Oligo Ids, Gene Ids, and Comments are quoted from the UIUC Honey bee oligo 13Â K v1 annotation file (May 2007).
DOI: 10.6084/m9.figshare.c.3602720_d2.v1
title: Additional file 3: of Phylogenetic, syntenic, and tissue expression analysis of slc22 genes in zebrafish (Danio rerio)

description: Transcription factor binding motif analysis of zebrafish and human slc22/Slc22 genes. Identification of potential sequence motifs and regulatory elements of human and zebrafish Slc22/slc22 genes. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.c.3602711_d5.v1
title: MOESM6 of Behavioral and molecular studies of quantitative differences in hygienic behavior in honeybees

description: Additional file 6: Table S6. The GO enrichment analysis for HB associated DEGs from the low HB source. Enrichments above score 2.0 are presented.
DOI: 10.6084/m9.figshare.c.3602720_d3.v1
title: Additional file 5: of Phylogenetic, syntenic, and tissue expression analysis of slc22 genes in zebrafish (Danio rerio)

description: Analysis of zebrafish and human Slc22/SLC22 protein topologies. Secondary structures of Slc22/SLC22 proteins showing transmembrane domains and extracellular and intracellular loops. (XLSX 563 kb)
DOI: 10.6084/m9.figshare.c.3602711_d6.v1
title: MOESM5 of Behavioral and molecular studies of quantitative differences in hygienic behavior in honeybees

description: Additional file 5: Table S5. The enrichment analysis for HB associated DEGs from the high HB source. Enrichments above the score 2.0 are presented.