cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.k56y5h
title: Occurrence Download

description: A dataset containing 309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acampe praemorsa (Roxb.) Blatt. & McCann",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 309 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002032-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.acwyj3
title: Occurrence Download

description: A dataset containing 2177950 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Material sample, Human Observation, Material citation, Occurrence evidence)",
 "CoordinateUncertaintyInMeters is less than or equal to 5000.0",
 "Country is one of (Bolivia (Plurinational State of), Paraguay, Peru, Brazil, Argentina)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 1970-2024"
 ]
}

 The dataset includes 2177950 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002026-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.slexwh
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Gongora Ruiz & Pav."
 ]
}

 The dataset includes 123 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003047-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yqyhll
title: Occurrence Download

description: A dataset containing 18796 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CollectionCode is plantae",
 "PublishingOrg is 5c7a5c20-1bd0-11d8-a2da-b8a03c50a862",
 "TaxonKey is Fabaceae"
 ]
}

 The dataset includes 18796 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003046-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.472119
title: (Table 4b) Downcore distribution of live benthic foraminifera of sediment core SW_3b, California continental borderland
DOI: 10.1594/pangaea.251264
title: Benthic foraminifera abundance of Hole 96-621

description: Relative abundance: D = dominant, A = abundant, C = common, F = few, R = rare, T = trace, P = present (numerical values are abundance in percent)
DOI: 10.15468/dl.lmgjqj
title: Occurrence Download

description: A dataset containing 572 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Living Specimen"
 ]
 },
 {
 "or" : [
 "Country is Chile",
 "Country is Argentina"
 ]
 },
 "TaxonKey is Austrocedrus chilensis (D.Don) Pic.Serm. & Bizzarri"
 ]
}

 The dataset includes 572 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003048-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/f77j-j355
title: Wound Healing Assay Dataset (WHAD) and Cell Adhesion and Motility Assay Dataset (CAMAD)

description: We introduce two novel datasets for cell motility and wound healing research: the Wound Healing Assay Dataset (WHAD) and the Cell Adhesion and Motility Assay Dataset (CAMAD). WHAD comprises time-lapse phase-contrast images of wound healing assays using genetically modified MCF10A and MCF7 cells, while CAMAD includes MDA-MB-231 and RAW264.7 cells cultured on various substrates. These datasets offer diverse experimental conditions, comprehensive annotations, and high-quality imaging data, addressing gaps in existing resources. The collection methods, experimental designs, and annotation processes are detailed, emphasizing the datasets' reliability and utility. WHAD and CAMAD enable researchers to develop robust algorithms for cell tracking, segmentation, and behavior analysis in phase-contrast microscopy images. The datasets' applications span cancer research, image processing technique development, and automated analysis of wound healing and cell motility assays. By providing these resources, we aim to accelerate progress in biomedical image analysis and cell biology research.
DOI: 10.15468/dl.92aarx
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Harvard University Herbaria: All Records",
 "TaxonKey is Aquilegia triternata Payson"
 ]
}

 The dataset includes 12 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034852-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.249372
title: Nannofossil abundance of Hole 5-33

description: Relative abundance: D = dominant, A = abundant, C = common, F = few, R = rare, T = trace, P = present (numerical values are abundance in percent)
DOI: 10.34740/kaggle/dsv/9026377
title: Mahanagar Yatayat Transport Dataset
DOI: 10.15468/dl.lwsunv
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003050-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w5zyxd
title: Occurrence Download

description: A dataset containing 86810 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Penstemon Schmidel"
 ]
}

 The dataset includes 86810 records from 248 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003049-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25625/1l7vdu/20iv61
title: TLS_indices_all.tab

description: :unav
DOI: 10.25625/1l7vdu/vj1aya
title: Linear modelling workflow_support functions.R

description: :unav
DOI: 10.25625/1l7vdu/csgalq
title: supp_basal_area_table.R

description: :unav
DOI: 10.25625/1l7vdu/e1m8fp
title: 01_LMM.R

description: :unav
DOI: 10.25625/1l7vdu/ocbmcd
title: UTM_coordinates.tab

description: :unav
DOI: 10.25625/1l7vdu/qui9sn
title: inventory_indices_2022.tab

description: :unav
DOI: 10.25625/1l7vdu/uysrh0
title: 01_PCA_trajectory.R

description: :unav
DOI: 10.25625/1l7vdu/xabtwd
title: 02_LMM.R

description: :unav
DOI: 10.25625/1l7vdu/8t4key
title: README_data.txt

description: :unav
DOI: 10.25625/1l7vdu/gjsz4q
title: 01_multi_comparison.R

description: :unav
DOI: 10.25625/1l7vdu/jzwq0j
title: 02_PCA_correlation.R

description: :unav
DOI: 10.25625/1l7vdu/nm7aqd
title: README_Rscript.txt

description: :unav
DOI: 10.25625/1l7vdu/yzuunj
title: 02_LMM_realized_diversity.R

description: :unav
DOI: 10.25625/1l7vdu
title: Data and code for: Combining planting trees and natural regeneration promotes long-term structural complexity in oil palm landscapes

description: Data and code for: Combining planting trees and natural regeneration promotes long-term structural complexity in oil palm landscapes
DOI: 10.25625/1l7vdu/64ljuv
title: realized_planted_tree_diversity.tab

description: :unav
DOI: 10.1594/pangaea.249371
title: Nannofossil abundance of Hole 5-32

description: Relative abundance: D = dominant, A = abundant, C = common, F = few, R = rare, T = trace, P = present (numerical values are abundance in percent)
DOI: 10.1594/pangaea.52447
title: Granulometry and foraminiferal content of sediment core PI-88-AR_P5
DOI: 10.15468/dl.k8fz5m
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Miopithecus I.Geoffroy Saint-Hilaire, 1842",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-9.54 -18.95,-9.54 15.57,45.57 15.57,45.57 -18.95,-9.54 -18.95))"
 ]
}

 The dataset includes 15 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001796-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yz279r
title: Occurrence Download

description: A dataset containing 380 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Synodontis nigriventris David, 1936"
 ]
}

 The dataset includes 380 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034854-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lfzdgg
title: Occurrence Download

description: A dataset containing 53777 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spiranthes Rich."
 ]
}

 The dataset includes 53777 records from 461 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003051-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jswdae
title: Occurrence Download

description: A dataset containing 174 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "TaxonKey is Abatia parviflora Ruiz & Pav.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 174 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003056-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26364331
title: Supplementary Figure 2

description: Data from Supplementary Figure 2
DOI: 10.6084/m9.figshare.26364331.v1
title: Supplementary Figure 2

description: Data from Supplementary Figure 2
DOI: 10.15468/dl.ldfocw
title: Occurrence Download

description: A dataset containing 7530 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Garrya Douglas ex Lindl."
 ]
}

 The dataset includes 7530 records from 194 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003055-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sq8a5b
title: Occurrence Download

description: A dataset containing 2952 species occurrences available in GBIF matching the query:
{
 "and" : [
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Barlia robertiana (Loisel.) Greuter"
 ]
}

 The dataset includes 2952 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034855-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.788442
title: (Table 2) Ostracoda community from DSDP Hole 95-613

description: Samples 95-613-12X-3,80-84; 95-613-13X-3,80-84; 95-613-18X-3,80-84; and 95-613-9X-3,80-84 barren.
DOI: 10.1594/pangaea.250823
title: Planktic foraminifera abundance of Hole 63-468

description: Relative abundance: D = dominant, A = abundant, C = common, F = few, R = rare, T = trace, P = present (numerical values are abundance in percent)
DOI: 10.15468/dl.kzsvwn
title: Occurrence Download

description: A dataset containing 345875 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "GadmGid is ITA.6_1"
 ]
}

 The dataset includes 345875 records from 321 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034853-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vaa7t6
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "TaxonKey is Abutilon insigne Planch.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 31 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003059-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26364391
title: Supplementary Figure 3

description: Data from Supplementary Figure 3
DOI: 10.6084/m9.figshare.26364391.v1
title: Supplementary Figure 3

description: Data from Supplementary Figure 3
DOI: 10.15468/dl.qfhrcd
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "TaxonKey is Abutilon megapotamicum (A.Spreng.) A.St.-Hil. & Naudin",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 10 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003060-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z7ycr4
title: Occurrence Download

description: A dataset containing 5535 species occurrences available in GBIF matching the query:
{
 "PublishingOrg" : [
 "is 47380c8a-0edd-4036-b1bc-d852cba8232f"
 ]
}

 The dataset includes 5535 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034859-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.788409
title: (Table 2) Upper Eocene silicoflagellates from DSDP Hole 95-612
DOI: 10.15468/dl.dkz6gk
title: Occurrence Download

description: A dataset containing 14757 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Bolivia (Plurinational State of)",
 "TaxonKey is one of (Characiformes, Siluriformes, Cyprinodontiformes, Synbranchiformes, Pleuronectiformes, Perciformes, Beloniformes, Myliobatiformes, Ceratodontiformes, Clupeiformes, Gymnotiformes)"
 ]
}

 The dataset includes 14757 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034860-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12795648
title: The features of Tissues and Patches for "Predicting microsatellite instabilitiy from histology images with a three-level hierarchical graph fusion model"

description: This repository contains features and corresponding coordinates of patches and tissues extracted from 430 and 326 histologic images from patients with colorectal and gastric cancers from the TCGA cohort (original whole section SVS images are freely available at https://portal.gdc.cancer.gov/). All images in this library are from formalin-fixed paraffin-embedded (FFPE) diagnostic sections (“DX” on the GDC Data Portal). This blog explains this in detail: http://www.andrewjanowczyk.com/download-tcga-digital-pathology-images-ffpe/

Preprocessing.

All SVS slices were pre-processed as follows.

According to “Deep learning can predict microsatellite instability directly from histology in gastrointestinal cancer” these histology images were categorized into The histology images were classified as “MSS” (microsatellite stable) or “MSIMUT” (microsatellite unstable or highly mutated) according to “Deep learning can predict microsatellite instability directly from histology in gastrointestinal cancer”, which corresponds to the division of the training and test sets in the article.

Patches were extracted at 40x objective magnification and 20x objective magnification, respectively, and the corresponding features were extracted by pre-training resnet48, respectively

The features of Tissues are thumbnails obtained at 2.5x objective magnification and further extracted by MedSAM after extracting the masks of the tissues.
DOI: 10.5281/zenodo.12795649
title: The features of Tissues and Patches for "Predicting microsatellite instabilitiy from histology images with a three-level hierarchical graph fusion model"

description: This repository contains features and corresponding coordinates of patches and tissues extracted from 430 and 326 histologic images from patients with colorectal and gastric cancers from the TCGA cohort (original whole section SVS images are freely available at https://portal.gdc.cancer.gov/). All images in this library are from formalin-fixed paraffin-embedded (FFPE) diagnostic sections (“DX” on the GDC Data Portal). This blog explains this in detail: http://www.andrewjanowczyk.com/download-tcga-digital-pathology-images-ffpe/

Preprocessing.

All SVS slices were pre-processed as follows.

According to “Deep learning can predict microsatellite instability directly from histology in gastrointestinal cancer” these histology images were categorized into The histology images were classified as “MSS” (microsatellite stable) or “MSIMUT” (microsatellite unstable or highly mutated) according to “Deep learning can predict microsatellite instability directly from histology in gastrointestinal cancer”, which corresponds to the division of the training and test sets in the article.

Patches were extracted at 40x objective magnification and 20x objective magnification, respectively, and the corresponding features were extracted by pre-training resnet48, respectively

The features of Tissues are thumbnails obtained at 2.5x objective magnification and further extracted by MedSAM after extracting the masks of the tissues.
DOI: 10.5281/zenodo.12806997
title: MetaFile_For_XgBoostModel
DOI: 10.5281/zenodo.12806998
title: MetaFile_For_XgBoostModel
DOI: 10.5281/zenodo.7109068
title: FOAMS: Processed Audio Files

description: The processed audio files included in the Free Open-Access Misophonia Stimuli (FOAMS) project to curate a freely available database of sound stimuli intended for misophonia research.

If you use this database, please credit it as follows:

Orloff, D. M., Benesch, D., & Hansen, H. A. (2023). Curation of FOAMS: a Free Open-Access Misophonia Stimuli Database. Journal of Open Psychology Data, 11(1).
description: This work was funded by a soQuiet Student Research Grant awarded to Heather Hansen and Danielle Benesch in 2022.
DOI: 10.15468/dl.5z6fwr
title: Occurrence Download

description: A dataset containing 52586 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gavia stellata (Pontoppidan, 1763)",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Country is one of (Germany, France, Spain, Portugal, Denmark, Austria, Italy, Switzerland, Greece, Poland, Hungary, Slovenia, Sweden, Norway, Slovakia, Montenegro, Croatia, North Macedonia, Serbia, Iceland, Ireland, United Kingdom of Great Britain and Northern Ireland, Albania, Bosnia and Herzegovina, Bulgaria)"
 ]
}

 The dataset includes 52586 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159641-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cqfgzd
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liparis gracilipes Schltr."
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011088-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qzfyxq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liparis glumacea Schltr."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011081-230530130749713/datasets/export for details.
DOI: 10.15468/dl.tpvx5v
title: Occurrence Download

description: A dataset containing 65174 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Larrea Cav."
 ]
}

 The dataset includes 65174 records from 268 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011080-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gdq4va
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liparis habenarina (F.Muell.) F.Muell. ex Benth."
 ]
}

 The dataset includes 164 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011097-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3wmcmy
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liparis heliophila J.J.Sm."
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011104-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7fndbc
title: Occurrence Download

description: A dataset containing 236488 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Field Museum of Natural History (Zoology) Mammal Collection"
 ]
}

 The dataset includes 236488 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005185-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ekxwpc
title: Occurrence Download

description: A dataset containing 455063 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Arum L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 455063 records from 2279 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005180-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.