cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24159564.v3
title: SnakeTraits 1.0: a species-level database of life history and ecology of snakes

description: Understanding biodiversity from a functional perspective is important for both evolutionary and ecological studies. Snakes, a unique and diverse group of terrestrial vertebrates with more than 4000 species, are an important part of ecosystems. However, information on the functional traits of snakes is scattered throughout an extensive primary literature. With the exception of a few traits like body size, most traits remain relatively inaccessible to researchers interested in studying the ecology and evolution of snakes on a large scale. In this study, we present a global species-level functional traits database for snakes. This database follows the most recently taxonomic scheme and covers 4040 species. We compiled this database based on 1289 scientific literature sources, including peer-reviewed papers, books, online databases, natural history records and field guides. We collected information on traits including body size, relative tail length, diel activity pattern, colour, microhabitats, reproductive mode, clutch size, diet, venomous and infrared sensing ability. Detailed information on these traits and the coding system for categorical traits can be found in the supporting materials. This database is the most comprehensive on snakes as far as we know. As our objective was to build a living dataset, we will update the database annually by adding new species and modified the data following the taxonomic changes. We hope that this database will facilitate macroecological and macroevolutionary studies of this interesting and important group.
DOI: 10.17632/rz6k2xxp6b.1
title: Exchange rate-investment link: Industry-level evidence for OECD countries

description: This is a panel data comprising from macroeconomic and sectoral indicators of 32 OECD countries. It includes two sectoral investment data. The Total investment covers investment data of 10 individual industries comprising all economic activity, while the Manufacturing investment includes investment in 10 individual manufacturing sub-sectors. The data sources are OECD-STAN, World Economic Outlook and International Financial Statistic databases.
DOI: 10.17632/9drwfts7zr.1
title: Transcriptome analysis of the synergistic mechanisms between two strains of Potato Virus Y in Solanum tuberosum L.

description: Transcriptome analysis of the synergistic mechanisms between two strains of Potato Virus Y in Solanum tuberosum L.
DOI: 10.17632/jpw686w9x2.1
title: Guanylate-Binding Protein 1 acts as a pro-viral factor for the life cycle of Hepatitis C virus

description: data to PPATHOGENS-D-23-01540R1 - [EMID:cb9fa632b60c0abe], doi 10.1371/journal.ppat.1011976
DOI: 10.17632/m3s3dbx4cm.1
title: Organoid models

description: Organoid models of primary tumor and lymph node metastasis recapitulating tumor features and refining gastric cancer precision therapy
DOI: 10.6084/m9.figshare.25053383
title: Gene sequences included in the study.zip

description: <i>Staphylococcus argenteus </i>is a novel species within the <i>Staphylococcus aureus</i> complex and can cause serious bloodstream infections (BSIs) in humans, which have been mainly reported in adults, especially the elderly. In this study, we analyzed the molecular characterization of a strain of <i>S. argenteus</i> isolated from the peripheral vein blood sample of a seven-month-old female infant in Eastern China. We also compared the molecular characterization of <i>S. argenteus</i> from different sources worldwide. The <i>S. argenteus</i> isolates from the infant belonged to sequence type (ST)2250 and harbored 6 antibiotic-resistance genes and 53 virulence genes and was resistant to penicillin. Comparative analysis of genome sequences of <i>S. argenteus</i> worldwide found that ST2250 was more prevalent among strains of human origin, whereas ST5961 and ST1223 were more prevalent among strains of nonhuman origin. Antibiotic-resistance genes <i>blaR1</i>, <i>blaI_of_Z</i>, <i>blaZ</i>, <i>fosB-Saur</i>, <i>tet(L)</i>, <i>aph(3')-IIIa</i>, <i>mecA</i>, and <i>dfrG</i> were more prevalent among the strains of human origin. Virulence genes <i>lukF-PV</i>, <i>sak</i>, <i>sdrE</i>, <i>scn</i>, <i>sdrC</i>, and <i>sdrD</i> were more prevalent among strains of human origin, whereas virulence genes <i>seb</i>, <i>vWbp</i>, <i>clfB</i>, <i>esaC</i>, <i>essC</i>, and <i>esxB</i> were more prevalent among the strains of nonhuman origin. The ST, antibiotic-resistance genes and virulence genes not exhibited a large difference between blood isolates and other human specimen isolates. In conclusion, <i>S. argenteus</i> ST2250 can cause serious BSIs in infants. <i>S. argenteus</i> of human origin has significant differences in ST and in antibiotic resistance and virulence genes from strains of nonhuman origin.
DOI: 10.6084/m9.figshare.24159564
title: SnakeTraits 1.0: a species-level database of life history and ecology of snakes

description: Understanding biodiversity from a functional perspective is important for both evolutionary and ecological studies. Snakes, a unique and diverse group of terrestrial vertebrates with more than 4000 species, are an important part of ecosystems. However, information on the functional traits of snakes is scattered throughout an extensive primary literature. With the exception of a few traits like body size, most traits remain relatively inaccessible to researchers interested in studying the ecology and evolution of snakes on a large scale. In this study, we present a global species-level functional traits database for snakes. This database follows the most recently taxonomic scheme and covers 4040 species. We compiled this database based on 1289 scientific literature sources, including peer-reviewed papers, books, online databases, natural history records and field guides. We collected information on traits including body size, relative tail length, diel activity pattern, colour, microhabitats, reproductive mode, clutch size, diet, venomous and infrared sensing ability. Detailed information on these traits and the coding system for categorical traits can be found in the supporting materials. This database is the most comprehensive on snakes as far as we know. As our objective was to build a living dataset, we will update the database annually by adding new species and modified the data following the taxonomic changes. We hope that this database will facilitate macroecological and macroevolutionary studies of this interesting and important group.
DOI: 10.6084/m9.figshare.24159564.v4
title: SnakeTraits 1.0: a species-level database of life history and ecology of snakes

description: Understanding biodiversity from a functional perspective is important for both evolutionary and ecological studies. Snakes, a unique and diverse group of terrestrial vertebrates with more than 4000 species, are an important part of ecosystems. However, information on the functional traits of snakes is scattered throughout an extensive primary literature. With the exception of a few traits like body size, most traits remain relatively inaccessible to researchers interested in studying the ecology and evolution of snakes on a large scale. In this study, we present a global species-level functional traits database for snakes. This database follows the most recently taxonomic scheme and covers 4040 species. We compiled this database based on 1289 scientific literature sources, including peer-reviewed papers, books, online databases, natural history records and field guides. We collected information on traits including body size, relative tail length, diel activity pattern, colour, microhabitats, reproductive mode, clutch size, diet, venomous and infrared sensing ability. Detailed information on these traits and the coding system for categorical traits can be found in the supporting materials. This database is the most comprehensive on snakes as far as we know. As our objective was to build a living dataset, we will update the database annually by adding new species and modified the data following the taxonomic changes. We hope that this database will facilitate macroecological and macroevolutionary studies of this interesting and important group.
DOI: 10.4121/5c3ad699-5ed4-4e91-8435-fb537e01f325.v1
title: GreenspacePerception (Github) data repository: underlying the publication "How well do NDVI and OpenStreetMap data capture people’s visual perceptions of urban greenspace?"

description: Data on vegetation index (NDVI), land use land cover class (OpenStreetMap), street view panorama metadata (Google Street View) of urban places in three cities in Europe: Barcelona, Rotterdam, and Gothenburg. Data on people's will be pseudonymized and added in the future. Please contact the authors if you have questions about this data in the mean time (r.f.l.teeuwen@tudelft.nl).
DOI: 10.4121/558f6150-a3e9-4960-82b2-cd2115c070d4.v1
title: GreenspacePerception (Github) code repository: analysis underlying the publication "How well do NDVI and OpenStreetMap data capture people’s visual perceptions of urban greenspace?"

description: These notebooks allow to collect spatial data, specifically NDVI, OpenStreetMap and Google Street View metadata, and conduct the quantitative analysis to research how well NDVI and OpenStreetMap data capture what people visually perceive as being urban greenspaces. These notebooks were used in complementation by data collection through a crowdsourcing questionnaire to collect people's perceptions of places presented in Google Street View imagery. The quantitative analysis was followed up by a qualitative analysis, of which the codebook is added to this repository as well as an .xlsx file.This code was developed for three cities in Europe: Barcelona, Rotterdam, and Gothenburg, but can be adapted to fit other geographical contexts.
DOI: 10.5281/zenodo.10548599
title: Stamps and seals of the Dulaurier collection

description: A dataset of stamps and seals detected within the scope of the project "Valorisation numérique du fonds Dulaurier", led by Calfa and GREgORI with the support of the Bibliothèque nationale de France (BnF Datalab, 2022-2023).

As part of the project, HTR processing of 14 manuscripts is carried out. These microfilmed manuscripts represent a large sample of Armenian historiography. They also contain several collections of unpublished correspondence, such as the Collection of correspondences of Catholicos and Armenian prelates with priests of Tabriz (Arm. 167). The transcriptions are available on Gallica and searchable in the GREgORI online corpora.

To know more about the project (in french) : https://calfa.fr/blog/39

The dataset is composed of 188 stamps and seals. The majority of Armenian seals are located in the manuscript Arm 167 (BnF-btv10087187), since it is a collection of correspondence. The other documents essentially contain various variations of the stamps and seals of the National Library of France (formerly the royal library and the imperial library).

Calfa: https://calfa.frGREgORI : https://uclouvain.be/fr/instituts-recherche/incal/ciol/gregori-project.htmlBnF Datalab : https://www.bnf.fr/fr/bnf-datalab
DOI: 10.5281/zenodo.10548598
title: Stamps and seals of the Dulaurier collection

description: A dataset of stamps and seals detected within the scope of the project "Valorisation numérique du fonds Dulaurier", led by Calfa and GREgORI with the support of the Bibliothèque nationale de France (BnF Datalab, 2022-2023).

As part of the project, HTR processing of 14 manuscripts is carried out. These microfilmed manuscripts represent a large sample of Armenian historiography. They also contain several collections of unpublished correspondence, such as the Collection of correspondences of Catholicos and Armenian prelates with priests of Tabriz (Arm. 167). The transcriptions are available on Gallica and searchable in the GREgORI online corpora.

To know more about the project (in french) : https://calfa.fr/blog/39

The dataset is composed of 188 stamps and seals. The majority of Armenian seals are located in the manuscript Arm 167 (BnF-btv10087187), since it is a collection of correspondence. The other documents essentially contain various variations of the stamps and seals of the National Library of France (formerly the royal library and the imperial library).

Calfa: https://calfa.frGREgORI : https://uclouvain.be/fr/instituts-recherche/incal/ciol/gregori-project.htmlBnF Datalab : https://www.bnf.fr/fr/bnf-datalab
DOI: 10.6084/m9.figshare.25051553
title: Gene expression with adjusting for covariates

description: <b>There are four uploaded files as follows.</b>TCGA_109s_GBM_IDHwt_log2TPM_genes60660_lm_adjusted_age_sex_source.txt--the log<sub>2 </sub>(TPM+1) values with regressing out the effects of age, gender, and data source using a linear model (the lm() function in the R package) for the TCGA dataset.12pairs_log2TPM_60683genes_lm_adjusted_sex_age--the log<sub>2 </sub>(TPM+1) values with regressing out the effects of age and gender using a linear model (the lm() function in the R package) for Wang et al.’s dataset (SRP074425).GLASS_87p_log2TPM_gene_lm_adjusted_age_sex_source_caseID.txt--the log<sub>2 </sub>(TPM+1) values with regressing out the effects of age, gender, data source, and paired P-R sample IDs using a linear model (the lm() function in the R package) for the GLASS dataset.GLASS_87p_log2TPM_gene_lm_adjusted_age_sex_source.txt--the log<sub>2 </sub>(TPM+1) values with regressing out the effects of age, gender, and data source using a linear model (the lm() function in the R package) for the GLASS dataset.
DOI: 10.6084/m9.figshare.25051553.v2
title: GBM datasets' gene expression by adjusting covariates

description: GBM study with patient-match primary and recurrence
DOI: 10.5281/zenodo.10559928
title: YUTO MMS Dataset, Sequence C, Lidar Data, Part2
DOI: 10.5281/zenodo.10559929
title: YUTO MMS Dataset, Sequence C, Lidar Data, Part2
DOI: 10.48479/tedr-jf87
title: MIGHTEE-polarisation Early Science Data Release

description: Early science data from MIGHTEE are being released from initial observations 
    of COSMOS and XMM-LSS. This paper describes the spectro-polarimetric observations, 
    the polarization data processing of the MIGHTEE early science fields, and presents 
    polarization data images and catalogues. The catalogues include radio spectral index, 
    redshift information and Faraday rotation measure synthesis results for 13,271 total 
    intensity radio sources down to a polarized intensity detection limit of about 20 
    microJy per beam.
DOI: 10.6084/m9.figshare.25050032.v2
title: MMLU

description: Measuring Massive Multitask Language Understandinghttps://github.com/hendrycks/test
DOI: 10.25502/8mbg-da02/d
title: Qualitative assessment on the positionality and preferences of dyads in relation to cassava-related activities: working with tricot trial citizen scientists

description: Research to strengthen gender integration in the triadic comparisons of technologies (TRICOT) approach for on-farm testing for cassava variety release.
DOI: 10.5281/zenodo.10560139
title: Measurable indicators of the Slovak state institutions´ websites

description: Directly measurable indicators of the Slovak state institutions´ websites collected by using online tools.
DOI: 10.5281/zenodo.7828493
title: X-ray Fluorescence Ghost Imaging - CuSn mask - Three Wires (Fe & Cu)

description: X-ray Fluorescence Ghost Imaging (XRF-GI) dataset of three wires (one Fe, and two Cu) in a plastic capillary. The capillary contains trace elements like Zn, Zr, etc.

The GI scan is presented in the following article 10.1364/OL.499046. A total of 896 GI realizations were taken, organized into 16 vertical translations and 56 horizontal translations of the structuring element (CuSn mask).The dataset contains both the sample transmission images and the masks plus sample transmission images. No images of the masks are provided (they need to be computed).

The data is organized in an HDF5 file, under the following structure:

dataset_CuSn-mask_3wires.h5
│
├data
│ ├flat_panel
│ │ ├dark               [float32: 16 × 170 × 350]
│ │ ├empty_beam         [float32: 170 × 350]
│ │ ├sample             [float32: 16 × 170 × 350]
│ │ └sample_and_masks   [float32: 16 × 56 × 170 × 350]
│ └xrf                  [float32: 16 × 56 × 4096]
│
└metadata
  └xrf
    ├bias_keV           [float64: scalar]
    ├gain_keV           [float64: scalar]
    └ranges
      ├Ca               [int64: 2]
      ├Cu               [int64: 2]
      ├Fe               [int64: 2]
      ├Si               [int64: 2]
      ├Ti               [int64: 2]
      ├Zn               [int64: 2]
      └Zr               [int64: 2]


The meaning of the paths is:



/data/xrf contains the XRF spectra for each GI realization

/data/flat_panel/dark contains the dark images of each scan line (no beam)

/data/flat_panel/empty_beam contains the empty beam (no sample & no masks) intensity distribution

/data/flat_panel/sample contains the transmission images of the sample at each scan line

/data/flat_panel/sample_and_masks contains the transmission images of the sample and masks at each GI realization

/metadata/xrf/bias_keV contains the bias in keV of the XRF spectrum

/metadata/xrf/gain_keV contains the gain in keV of each XRF energy bin

/metadata/xrf/ranges/ contains the bin ranges for interesting Kalpha elemental emission lines in the XRF spectrum


For further information we refer to the associated publication.

The data can be processed with structured illumination routines of the code at: https://github.com/cicwi/PyCorrectedEmissionCT.
DOI: 10.5281/zenodo.7828494
title: X-ray Fluorescence Ghost Imaging - CuSn mask - Three Wires (Fe & Cu)

description: X-ray Fluorescence Ghost Imaging (XRF-GI) dataset of three wires (one Fe, and two Cu) in a plastic capillary. The capillary contains trace elements like Zn, Zr, etc.

The GI scan is presented in the following article 10.1364/OL.499046. A total of 896 GI realizations were taken, organized into 16 vertical translations and 56 horizontal translations of the structuring element (CuSn mask).The dataset contains both the sample transmission images and the masks plus sample transmission images. No images of the masks are provided (they need to be computed).

The data is organized in an HDF5 file, under the following structure:

dataset_CuSn-mask_3wires.h5
│
├data
│ ├flat_panel
│ │ ├dark               [float32: 16 × 170 × 350]
│ │ ├empty_beam         [float32: 170 × 350]
│ │ ├sample             [float32: 16 × 170 × 350]
│ │ └sample_and_masks   [float32: 16 × 56 × 170 × 350]
│ └xrf                  [float32: 16 × 56 × 4096]
│
└metadata
  └xrf
    ├bias_keV           [float64: scalar]
    ├gain_keV           [float64: scalar]
    └ranges
      ├Ca               [int64: 2]
      ├Cu               [int64: 2]
      ├Fe               [int64: 2]
      ├Si               [int64: 2]
      ├Ti               [int64: 2]
      ├Zn               [int64: 2]
      └Zr               [int64: 2]


The meaning of the paths is:



/data/xrf contains the XRF spectra for each GI realization

/data/flat_panel/dark contains the dark images of each scan line (no beam)

/data/flat_panel/empty_beam contains the empty beam (no sample & no masks) intensity distribution

/data/flat_panel/sample contains the transmission images of the sample at each scan line

/data/flat_panel/sample_and_masks contains the transmission images of the sample and masks at each GI realization

/metadata/xrf/bias_keV contains the bias in keV of the XRF spectrum

/metadata/xrf/gain_keV contains the gain in keV of each XRF energy bin

/metadata/xrf/ranges/ contains the bin ranges for interesting Kalpha elemental emission lines in the XRF spectrum


For further information we refer to the associated publication.

The data can be processed with structured illumination routines of the code at: https://github.com/cicwi/PyCorrectedEmissionCT.
DOI: 10.6084/m9.figshare.25053505
title: Supp 5: Constraining the exhumation history of the north-western margin of Tibet with a comparison to the adjacent Pamir

description: Supplementary Info 5. Zircon Hf data.
DOI: 10.6084/m9.figshare.25053505.v1
title: Supp 5: Constraining the exhumation history of the north-western margin of Tibet with a comparison to the adjacent Pamir

description: Supplementary Info 5. Zircon Hf data.
DOI: 10.6084/m9.figshare.25053514
title: Supp 9: Constraining the exhumation history of the north-western margin of Tibet with a comparison to the adjacent Pamir

description: Supplementary Info 9. AFT data.
DOI: 10.6084/m9.figshare.25053514.v1
title: Supp 9: Constraining the exhumation history of the north-western margin of Tibet with a comparison to the adjacent Pamir

description: Supplementary Info 9. AFT data.
DOI: 10.6084/m9.figshare.25053517
title: Supp 7: Constraining the exhumation history of the north-western margin of Tibet with a comparison to the adjacent Pamir

description: Supplementary Info 7. ZFT data.
DOI: 10.6084/m9.figshare.25053517.v1
title: Supp 7: Constraining the exhumation history of the north-western margin of Tibet with a comparison to the adjacent Pamir

description: Supplementary Info 7. ZFT data.
DOI: 10.6084/m9.figshare.25053520
title: Supp 3: Constraining the exhumation history of the north-western margin of Tibet with a comparison to the adjacent Pamir

description: Supplementary Info 3. Petrography. 3a: data. 3b: Thin-section microphotographs of sandstones and sands from the Kashitashi and Sanju sections and modern rivers.
DOI: 10.6084/m9.figshare.25053520.v1
title: Supp 3: Constraining the exhumation history of the north-western margin of Tibet with a comparison to the adjacent Pamir

description: Supplementary Info 3. Petrography. 3a: data. 3b: Thin-section microphotographs of sandstones and sands from the Kashitashi and Sanju sections and modern rivers.
DOI: 10.6084/m9.figshare.25053523
title: Supp 6: Constraining the exhumation history of the north-western margin of Tibet with a comparison to the adjacent Pamir

description: Supplementary Info 6. Rutile U–Pb data.
DOI: 10.6084/m9.figshare.25053523.v1
title: Supp 6: Constraining the exhumation history of the north-western margin of Tibet with a comparison to the adjacent Pamir

description: Supplementary Info 6. Rutile U–Pb data.
DOI: 10.6084/m9.figshare.25053526
title: Supp 2: Constraining the exhumation history of the north-western margin of Tibet with a comparison to the adjacent Pamir

description: Supplementary Info 2. Sample information.
DOI: 10.6084/m9.figshare.25053526.v1
title: Supp 2: Constraining the exhumation history of the north-western margin of Tibet with a comparison to the adjacent Pamir

description: Supplementary Info 2. Sample information.
DOI: 10.6084/m9.figshare.25053529
title: Supp 8: Constraining the exhumation history of the north-western margin of Tibet with a comparison to the adjacent Pamir

description: Supplementary Info 8. Zircon U–Pb and ZFT double dating data.
DOI: 10.6084/m9.figshare.25053529.v1
title: Supp 8: Constraining the exhumation history of the north-western margin of Tibet with a comparison to the adjacent Pamir

description: Supplementary Info 8. Zircon U–Pb and ZFT double dating data.
DOI: 10.6084/m9.figshare.25053532
title: Supp 4: Constraining the exhumation history of the north-western margin of Tibet with a comparison to the adjacent Pamir

description: Supplementary Info 4. Zircon U–Pb data.
DOI: 10.6084/m9.figshare.25053532.v1
title: Supp 4: Constraining the exhumation history of the north-western margin of Tibet with a comparison to the adjacent Pamir

description: Supplementary Info 4. Zircon U–Pb data.
DOI: 10.5281/zenodo.10402072
title: Definição de modelos de monitorização do patrimônio geológico: aplicação em geossítios de Portugal Continental_

description: Anexo IX: Tabela comparativa de caracterização dos corpos de prova submetidos aos ensaios de alterabilidade, dados antes e após os ensaios. Anexo da tese de doutoramento Canesin, T. S. (2024)_ Definição de modelos de monitorização do patrimônio geológico: aplicação em geossítios de Portugal Continental