cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10149873
title: Tractfinder atlases and training streamlines

description: Atlases and source data for the tractfinder tract segmentation method. "atlases" is all you need to run tractfinder on your own data. The source streamlines are provided in "data" for completeness only.

Install tractfinder here: https://github.com/fionaEyoung/tractfinder

Files

atlases 

Contains the left and right tractfinder atlases for the arcuate fasciculus (AF), corticospinal tracts (CST), inferior fronto-occipital fasciculus (IFOF) and optic radiation (OR). It also contains the template T1w weighted file MNI152.nii.gz which is provided for convenience as a template space anatomical image alongside the atlases. It is a copy of mni_icbm152_t1_tal_nlin_sym_09a.nii from the MNI152 ICBM 2009a Nonlinear Symmetric template.

data

Contains the individual streamline bundles (16 adult volunteer subjects) from which the atlases are derived, in subject and MNI space. Source dataset (raw diffusion and T1w MRI data) available here: OSF | EEG, fMRI and NODDI dataset.

Additionally, transform files are provided for registering to and from MNI space (see below).

Author: Fiona Young, fiona.young.15@ucl.ac.uk
description: Important information about transforms

Each subject directory in data.zip contains the files



MNI152_2_scanner.nii.gz

MNI152_2_scanner.txt

scanner_2_MNI152.nii.gz

scanner_2_MNI152.txt


Each .txt file contains the corresponding transform in reverse convention, i.e. in a format suitable for transforming images in the expected direction:

mrtransform -linear scanner_2_MNI152.txt T1w.nii.gz T1w_in_MNI152_space.nii.gz

Each .nii.gz file contains the corresponding transform in forward convention, i.e. in a format suitable for transform track files:

tcktransform streams.tck scanner_2_MNI152.nii.gz streams_in_MNI152_space.tck

All are affine transforms derived from FSL's flirt tool.
DOI: 10.5517/ccdc.csd.cc29ghfq
title: CCDC 2129093: Experimental Crystal Structure Determination

description: Related Article: Feng Han, Yuanhao Xie, Xiulan Xie, Sergei I. Ivlev, Eric Meggers|2023|Synlett|34|1403|doi:10.1055/s-0042-1751372
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29ghgr
title: CCDC 2129094: Experimental Crystal Structure Determination

description: Related Article: Feng Han, Yuanhao Xie, Xiulan Xie, Sergei I. Ivlev, Eric Meggers|2023|Synlett|34|1403|doi:10.1055/s-0042-1751372
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29ghhs
title: CCDC 2129095: Experimental Crystal Structure Determination

description: Related Article: Feng Han, Yuanhao Xie, Xiulan Xie, Sergei I. Ivlev, Eric Meggers|2023|Synlett|34|1403|doi:10.1055/s-0042-1751372
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c8dpr
title: CCDC 2182824: Experimental Crystal Structure Determination

description: Related Article: Agnieszka Nowak-Król, Felix Full, Martijn J. Wildervanck, Daniel Volland|2023|Synlett|34|477|doi:10.1055/a-1914-1799
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dbcvz
title: CCDC 2214511: Experimental Crystal Structure Determination

description: Related Article: H. Nakazawa, Y. Uetake, Y. Yakiyama, H. Sakurai|2022|CSD Communication|||
description: Related Article: H. Nakazawa, Y. Uetake, Y. Yakiyama, H. Sakurai|2023|Synlett|34|374|doi:10.1055/a-1992-0487
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fdf5g
title: CCDC 2246265: Experimental Crystal Structure Determination

description: Related Article: Lucile Chatelain, Federica Arrigoni, Philippe Schollhammer, Giuseppe Zampella|2023|Inorg.Chem.|62|20913|doi:10.1021/acs.inorgchem.3c03481
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fdf6h
title: CCDC 2246266: Experimental Crystal Structure Determination

description: Related Article: Lucile Chatelain, Federica Arrigoni, Philippe Schollhammer, Giuseppe Zampella|2023|Inorg.Chem.|62|20913|doi:10.1021/acs.inorgchem.3c03481
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2flmwk
title: CCDC 2252239: Experimental Crystal Structure Determination

description: Related Article: Chandra Shekhar Tiwari, Praseetha Mathoor Illam, Arnab Rit|2023|Chem.Asian J.|18|e202300484|doi:10.1002/asia.202300484
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2frxw0
title: CCDC 2257323: Experimental Crystal Structure Determination

description: Related Article: Yu Yao, Peiling Zhang, Dan Zhou, Zhinan Lai, Shijun Li, Feihe Huang, Zibin Zhang|2024|Chin.Chem.Lett.|35|108712|doi:10.1016/j.cclet.2023.108712
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fvdxm
title: CCDC 2259711: Experimental Crystal Structure Determination

description: Related Article: Jonas Gosch, Virginia Guiotto, Felix Steinke, Erik Svensson Grape, Cesare Atzori, Kalle Mertin, Tobias Otto, Niklas Ruser, Christoph Meier, Diletta Morelli Venturi, A. Ken Inge, Kirill A. Lomachenko, Valentina Crocellà, Norbert Stock|2023|Inorg.Chem.|62|20929|doi:10.1021/acs.inorgchem.3c01862
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3886/e113187v1-144647
title: Replication data for: Immigration Restrictions as Active Labor Market Policy: Evidence from the Mexican Bracero Exclusion

description: An important class of active labor market policy has received little impact evaluation: immigration barriers intended to raise wages and employment by shrinking labor supply. Theories of endogenous technical advance raise the possibility of limited or even perverse impact. We study a natural policy experiment: the exclusion of almost half a million Mexican bracero farm workers from the United States to improve farm labor market conditions. With novel labor market data we measure state-level exposure to exclusion and model the absent changes in technology or crop mix. We fail to reject zero labor market impact, inconsistent with this model.
DOI: 10.6084/m9.figshare.21568509
title: Data and code for: Masting, fire-stimulated flowering, and the evolutionary ecology of synchronized reproduction

description: Data and code for Beck et al., "Masting, fire-stimulated flowering, and the evolutionary ecology of synchronized reproduction." Contains all data and code necessary to replicate figures and analyses presented in the manuscript.
DOI: 10.6084/m9.figshare.21568509.v2
title: Data and code for: Masting, fire-stimulated flowering, and the evolutionary ecology of synchronized reproduction

description: Data and code for Beck et al., "Masting, fire-stimulated flowering, and the evolutionary ecology of synchronized reproduction." Contains all data and code necessary to replicate figures and analyses presented in the manuscript.
DOI: 10.6084/m9.figshare.21568509.v1
title: Data and code for -- "Masting, fire-stimulated flowering, and the evolutionary ecology of synchronized reproduction"

description: Data and code for Beck et al., "Masting, fire-stimulated flowering, and the evolutionary ecology of synchronized reproduction." Contains all data and code necessary to replicate figures and analyses presented in the manuscript.
DOI: 10.5281/zenodo.10456750
title: E3SMv2 NARRM

description: This E3SMv2 dataset contains 4 variables (FSDS, TS, UBOT, and VBOT) with NARRM configuration and daily output. The daily frequency outputs were generated for the study "Assessment of Climate Change Impacts on Renewable Energy Resources in the Western Interconnection Region".
DOI: 10.5281/zenodo.10456751
title: E3SMv2 NARRM

description: This E3SMv2 dataset contains 4 variables (FSDS, TS, UBOT, and VBOT) with NARRM configuration and daily output. The daily frequency outputs were generated for the study "Assessment of Climate Change Impacts on Renewable Energy Resources in the Western Interconnection Region".
DOI: 10.5281/zenodo.8432612
title: Synthetic and mechanistic study on the conjugate isothiocyanation of enones with trimethylsilyl isothiocyanate

description: Gaussian 16 output files for all computed structures in the article "Synthetic and mechanistic study on the conjugate isothiocyanation of enones with trimethylsilyl isothiocyanate". Organic & Biomolecular Chemistry, 2023, 21, 9583-9590. https://doi.org/10.1039/D3OB01710A
DOI: 10.5281/zenodo.8432613
title: Synthetic and mechanistic study on the conjugate isothiocyanation of enones with trimethylsilyl isothiocyanate

description: Gaussian 16 output files for all computed structures in the article "Synthetic and mechanistic study on the conjugate isothiocyanation of enones with trimethylsilyl isothiocyanate". Organic & Biomolecular Chemistry, 2023, 21, 9583-9590. https://doi.org/10.1039/D3OB01710A
DOI: 10.6084/m9.figshare.24943860
title: Data for the paper of "Underestimation of Ages of Late-Pleistocene Sediments in the Yangtze River Delta by Single-aliquot Quartz OSL Dating"

description: AMS14C and OSL Data for the paper of "Underestimation of Ages of Late-Pleistocene Sediments in the Yangtze River Delta by Single-aliquot Quartz OSL Dating"
DOI: 10.6084/m9.figshare.24943860.v1
title: Data for the paper of "Underestimation of Ages of Late-Pleistocene Sediments in the Yangtze River Delta by Single-aliquot Quartz OSL Dating"

description: AMS14C and OSL Data for the paper of "Underestimation of Ages of Late-Pleistocene Sediments in the Yangtze River Delta by Single-aliquot Quartz OSL Dating"
DOI: 10.5066/p9kndyu3
title: Gravity data in the Wet Mountains area, southcentral Colorado, 2023

description: The U.S. Geological Survey collected ground gravity data as part of a helicopter reconnaissance campaign of the Democrat Creek alkaline complex and Deer Peak quadrangle in the Wet Mountains, Colorado. A total of 60 measurements were collected using a LaCoste and Romberg gravity meter. High accuracy geographic coordinates and elevations were collected using a survey grade Leica GS16 differential GPS system. These data supplement existing public gravity data to aid in the interpretation of a newly collected, high-resolution airborne magnetic survey (Grauch et al., 2023).

Grauch, V.J.S., Anderson, E.D., Brown, P.J., and Allen Langhans, A.D., 2023, Airborne magnetic and radiometric survey of the Wet Mountains and surrounding region, Custer and Fremont Counties, south-central Colorado, 2021: U.S. Geological Survey data release, https://doi.org/10.5066/P9PISI0X.
DOI: 10.6085/aa/iptlxx_xxxix03xmsr01_20221115.50.1
title: MARINe/PISCO: Intertidal: site temperature data: Point Lobos, California (IPTLXX)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Point Lobos, California by MARINe/PISCO. Measurements were collected using HOBO Tidbit MX Water Temperature 400ft Data Logger (Onset Computer Corp. MX2203) beginning 2022-11-22. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10 or 15 minute intervals.
DOI: 10.5281/zenodo.10459693
title: Aligned sequence dataset used for phylogenomic study in 'Candidatus Phytoplasma meliae' genome description
DOI: 10.5281/zenodo.10459694
title: Aligned sequence dataset used for phylogenomic study in 'Candidatus Phytoplasma meliae' genome description
DOI: 10.5281/zenodo.10397672
title: The adhesion GPCR GPR116/ADGRF5 has a dual function in pancreatic islets regulating somatostatin release and islet development

description: Glucose homeostasis is maintained by hormones secreted from different cell types of the pancreatic islets and controlled by manifold input including signals mediated through G protein-coupled receptors (GPCRs). RNA-seq analyses revealed expression of numerous GPCRs in mouse and human pancreatic islets, among them Gpr116/Adgrf5. GPR116 is an adhesion GPCR mainly found in lung and required for surfactant secretion. Here, we demonstrate that GPR116 is involved in the somatostatin release from pancreatic delta cells using a whole-body as well as a cell-specific knock-out mouse model. Interestingly, the whole-body GPR116 deficiency causes further changes such as decreased beta-cell mass, lower number of small islets, and reduced pancreatic insulin content. Glucose homeostasis in global GPR116-deficient mice is maintained by counter-acting mechanisms modulating insulin degradation. Our data highlight an important function of GPR116 in controlling glucose homeostasis.
DOI: 10.5281/zenodo.10397673
title: The adhesion GPCR GPR116/ADGRF5 has a dual function in pancreatic islets regulating somatostatin release and islet development

description: Glucose homeostasis is maintained by hormones secreted from different cell types of the pancreatic islets and controlled by manifold input including signals mediated through G protein-coupled receptors (GPCRs). RNA-seq analyses revealed expression of numerous GPCRs in mouse and human pancreatic islets, among them Gpr116/Adgrf5. GPR116 is an adhesion GPCR mainly found in lung and required for surfactant secretion. Here, we demonstrate that GPR116 is involved in the somatostatin release from pancreatic delta cells using a whole-body as well as a cell-specific knock-out mouse model. Interestingly, the whole-body GPR116 deficiency causes further changes such as decreased beta-cell mass, lower number of small islets, and reduced pancreatic insulin content. Glucose homeostasis in global GPR116-deficient mice is maintained by counter-acting mechanisms modulating insulin degradation. Our data highlight an important function of GPR116 in controlling glucose homeostasis.
DOI: 10.5281/zenodo.10459692
title: The adhesion GPCR GPR116/ADGRF5 has a dual function in pancreatic islets regulating somatostatin release and islet development

description: Glucose homeostasis is maintained by hormones secreted from different cell types of the pancreatic islets and controlled by manifold input including signals mediated through G protein-coupled receptors (GPCRs). RNA-seq analyses revealed expression of numerous GPCRs in mouse and human pancreatic islets, among them Gpr116/Adgrf5. GPR116 is an adhesion GPCR mainly found in lung and required for surfactant secretion. Here, we demonstrate that GPR116 is involved in the somatostatin release from pancreatic delta cells using a whole-body as well as a cell-specific knock-out mouse model. Interestingly, the whole-body GPR116 deficiency causes further changes such as decreased beta-cell mass, lower number of small islets, and reduced pancreatic insulin content. Glucose homeostasis in global GPR116-deficient mice is maintained by counter-acting mechanisms modulating insulin degradation. Our data highlight an important function of GPR116 in controlling glucose homeostasis.
DOI: 10.25919/4xwv-xm05
title: Parkes observations for project P595 semester 2023OCTS_06

description: We propose to continue the PULSE@Parkes project in which high school students from Australia and around the World use the Parkes radio telescope in a remote observing model to observe and analyse pulsar data. The data from some PULSE@Parkes observations are used to support the space missions, other observations supplement the P456 Pulsar Timing Array project and the remainder were chosen in order to make a detailed analysis of pulsar timing irregularities and intermittency.
DOI: 10.25919/64k0-6m64
title: Parkes observations for project P1176 semester 2023OCTS_02

description: Pulsars and their winds are among nature's most powerful particle accelerators, producing particles with energies up to a few PeVatrons. In addition to high-energy radiation from the magnetosphere, the rotational energy of a neutron star is carried away in the form of magnetized ultra-relativistic pulsar winds. Investigation of pulsar wind nebula (PWN) offers an excellent chance to determine the interaction details of relativistic flows with their surroundings that may never be possible in other classes of source. Our recent analyses of ASKAP observations of Galactic Plane uncovered previously known X-ray PWN CXOU J163802.6-471358 (nicknamed as Potoroo). Recently, we have successfully detected a pulsar candidate associated with Potoroo with Parkes telescope. It is detected at 3 GHz with a dispersion measure of DM = 1553 pc cm-3 and a rotation period of 65.74 ms. Here we propose to continue timing observations for this young pulsar with the Parkes Ultra-Wideband Low (UWL) receiver. Through pulsar timing, we will be able to obtain precise measurements of the pulsar position and proper motions, and the spin-down of the pulsar which enables us to independently estimate the age of the system. Long-term timing will also enable us to measure the parallax of the system and search for pulsation at high energies (i.e. X-ray and gamma-ray)
DOI: 10.25919/m61y-xa56
title: Parkes observations for project P1172 semester 2023OCTS_06

description: PSR J1713+0747 is a very important millisecond pulsar for global pulsar timing array campaigns, due to its long-term observation history, very stable and narrow profile and strong S/N. In April 2021, the pulsar experienced a significant event related to a change in its magnetosphere, presented as an observable change in the pulsar profile. Since then, the pulsar has been slowly recovering and we wish to observe this recovery with high-cadence observations to allow us to create a detailed time-resolved series of variations in the MSPs profile, polarisation, and other properties. Under this proposal, we wish to probe the profile recovery on weekly timescales (once per week per month), revealing additional short timescale behaviours, indicative of changes in the magnetosphere which are not available to other telescopes in the world, thanks to the Parkes UWL. This will also allow us to determine if the magnetosphere has returned to its original configuration or is settling into a new one. Understanding the recovery of this event is key for demonstrating that such pulsars are still viable clocks for use in gravitational wave studies, and in turn, provide us with new data on how the normally stable magnetosphere of this millisecond pulsar responds to an impulsive change in state.
DOI: 10.6084/m9.figshare.24944571.v1
title: SNP Array Details

description: Table of information on SNP loci used in Sitka spruce SNP array with data on sequence and previous mapping in white spruce.
DOI: 10.6084/m9.figshare.24944571
title: SNP Array Details

description: Table of information on SNP loci used in Sitka spruce SNP array with data on sequence and previous mapping in white spruce.
DOI: 10.6073/pasta/ad78a18cb6192e8a987dc1944d24224a
title: Precipitation data for four sites on the eastern side of Delmarva Peninsula, 2001-2022

description: Rain gauges (Davis Instruments rain collector with HOBO Event Recorder) were installed at four sites latitudinally along the Eastern Shore, VA to measure instantaneous rainfall. The logger only records when there is a precipitation event (0.2 mm minimum). We calculated daily rain totals and provided only dates with rain. The data represents the time period of 8/9/01 on for Mill, Garg, and Mosq sites and 10/16/01 on for Wach site.
 The system was down between October 2008 and December 2010. It was replaced by an upgraded system in January 2011 with new Davis tipping-bucket rain gauges and data loggers, and primary responsibility for data collection and processing shifted to VCR/LTER staff.
 This file will be updated when additional data is downloaded from the rain gauges.
DOI: 10.6073/pasta/e971d15f8613870298b1ed72e646b353
title: End of Year Biomass in Marshes of the Virginia Coast Reserve 1999-2007

description: NOTE THIS DATASET HAS BEEN SUPERCEDED BY DATASET VCR09159
 This is the end of the year biomass information for the megasite marsh study. Annual sampling of a number of salt marshes and transitional zones into the upland was begun in 1999. And has continued annually.
 Goals
 The goal of this long-term project is to look at how sea-level rise affects marsh evolution. Seventeen sites along Virginia's eastern shore have been selected to study marsh evolution on both the mainland and the barrier islands.
 The original project established initial site characteristics.
DOI: 10.13011/m3-9z5e-6997
title: Temperature-Dependent Material Property Database for 70/30 Cu-Ni Castings
DOI: 10.6073/pasta/c8186229231525aac259080830ba0c22
title: Stream Water Level and Temperature for Mainland Creeks on the Atlantic Coast of Virginia 2002-2009

description: This dataset includes stage (water level) and temperature for selected creeks along the Atlantic Coast of the Delmarva Peninsula, in Virginia. Pressure sensors were placed in the creeks (typically along the edge of Route 600 (Seaside Road), and corrected for barometric pressure changes in post-processing.
DOI: 10.5281/zenodo.10459513
title: Nanoscale visualization and spectral fingerprints of the charge order in ScV6Sn6 distinct from other kagome metals