cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17168943
title: Data from: Broad-scale patterns of vertical benthic zonation in the mesophotic and deep Red Sea

description: Abstract

Aim: To characterise patterns of mesophotic and deep benthic zonation for the first time in the Red Sea, focusing on depth (from 80 to 600 m) and latitudinal (from 16.56oN to 29.31oN) gradients.

Location: The Saudi Arabian Red Sea.

Methods: We used high-resolution bathymetry, benthic video transects, and environmental data profiles. Images were extracted from the videos and processed through ReefCloud, using artificial intelligence, to annotate visible benthic organisms and substrate type. The resulting seafloor and macrofauna components were analysed using multivariate statistics to determine patterns of zonation by depth and latitude, and to evaluate relationships with temperature, salinity and slope inclination.

Results: With an overall accuracy of 84%, the ReefCloud model delivered high performance in taxonomic identification. Between depths of 80 and 140 m, there was a high coverage of benthic organisms (19-31%), including crustose calcifying red algae (CCRA) and zooxanthellate Scleractinia. There was a community break at 140 m, below which a decrease in light levels correlated with a decline in benthic coverage by these taxa. Species diversity decreased in deeper waters (> 140 m), and the availability of hard substrate, rather than light attenuation, was the primary correlate with biodiversity patterns. The depth distributions of studied taxa in the warm and hypersaline Red Sea were comparable to distributions of similar taxa in other, cooler basins. This similarity highlights the importance of light and substrate composition, versus water temperature, in shaping species zonation.

Main conclusions: We identified patterns of zonation along the mesophotic and deep depth gradient throughout the Saudi Arabian Red Sea. Patterns were relatively consistent along the latitudinal gradient, but some fauna were distributed to shallower depths in the more turbid south. These results provide an essential starting point for marine spatial planning in the mesophotic and deep Red Sea.

 

Table of contents

Average_slope.csv - Angle of the slope averaged for every 10 m depth range across all survey sites in the Saudi Arabian Red Sea, including standard deviation and standard error.

Temp_Sal.csv - Temperature (oC) and salinity averaged for every 10 m depth range across all survey sites in the Saudi Arabian Red Sea, including standard deviation and standard error.

ReefCloud_Annotations.csv - All annotations (human and machine) from ReefCloud (before cluster analysis).
DOI: 10.15468/h9nw49
title: Annual Dynamics of Bacterial & Archaeal Communities in the West Spitsbergen Current (2018-2019)

description: This dataset contains 16S rRNA amplicon sequences, derived from autonomous sampling between August 2018 to August 2019 in the West Spitsbergen Current (mooring F4-S-3). The data is part of the LTER "FRAM" (Fram Strait, Arctic Ocean) of the Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research.
DOI: 10.15468/iufhym
title: Shallow-water pockmarks diversity Targeted Locus (Loci)

description: Shallow-water pockmarks are associated with hydrocarbon ascent through the muddy sediment blanjet in world-wide continental shelves. We investigated the prokaryotic diversity in the sediment of several shallow-water pockmarks.
DOI: 10.15468/2ej8xq
title: Vertebrates detected in marine water (collected July 2023) from the North Atlantic by the MSC Poesia cruise ship; inferred from 12S DNA metabarcoding data.

description: The data presented here was collected under the 2023 phase of the "Biodiversity Sampling from Cruise Liners using eDNA" project that was initiated to contribute data to the eBioAtlas program. These data are from the MSC Cruises’ vessel, the Poesia, and their collection is a groundbreaking project that aims to use the best available innovative technology to fill gaps in marine biodiversity data and to make these data available to conservation decision-makers. It is a collaborative effort between NatureMetrics, MSC Cruises, and the MSC Foundation.

The data is being made available by the MSC Foundation and MSC Cruises to be used by the eBioAtlas program. eBioAtlas is a collaboration between NatureMetrics and IUCN to use the power of eDNA to fill global biodiversity knowledge gaps and deliver impact in conservation. The goal is to establish a cohesive biodiversity data layer, facilitating informed decision-making for the betterment of both humanity and nature. 
[This dataset was processed using the GBIF eDNA converter tool.]
DOI: 10.15468/y7hwik
title: La Medee sediment - Extracellular Metagenome Metagenome

description: SSU 16S pyrosequencing project of the extracellular DNA metagenome of a DHAB sediment (La Medee) from the Eastern Mediterranean.
DOI: 10.15468/dl.cggf7c
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Campanula lactiflora",
 "Country is Czechia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 22 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008702-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/vrt89w
title: Thermokarst ponds Targeted Locus (Loci)

description: The objective of our study was to evaluate the release and potential for GHG emissions in the poorly studied runnel ponds compared with polygonal ponds of northeastern Canada. Archaeal community composition in the sediments was analyzed with high-throughput 16S rRNA gene pyrosequencing.
DOI: 10.15468/dl.33g2bc
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Campanula lactiflora",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008700-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/8xp6-jd13
title: "M3 (MADHAV Lab Mistake Detection for Music Teaching Database)"

description: "Music pedagogy, particularly in India, is an oral-aural tradition where the teacher sings along with the learner, mostly one-on-one. In the most common setup, teaching proceeds in a call-and-response fashion, where the teacher sings a short piece, and the learner repeats the same. For instance, the teacher may trim the original piece to include only the segment sung incorrectly by the learner. If the mistake persists or corresponds to an essential concept, the teacher may take a detour to a series of lessons aiming at cultivating that particular concept. This work is a step towards emulating this paradigm computationally. The teacher\u2019s lessons are recorded priori. A learner is presented with these lessons, one piece at a time, sequentially. As the learner repeats the piece, her mistakes are to be detected computationally. Detection of singing mistakes is the primary task of this work. This is to be accomplished by comparing the teacher\u2019s audio with that of the learner. The concept of tonic or keynote is very essential in Indian classical music. Generally, this note, often along with some other essential ones, is played throughout the performance via a drone instrument known as tanpura. The pedagogy involves practicing with the drone instrument playing in the background."
DOI: 10.15468/dl.2fdja8
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Campanula lactiflora",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008701-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/jjydsy
title: Coral metagenome ICM_CCB

description: Exploring the microbial diversity and testing co-evolutionary hypotheses in Caribbean coral species using a 454-tag sequencing approach.
DOI: 10.15468/dl.dhf7yc
title: Occurrence Download

description: A dataset containing 1339610 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus robur"
 ]
}

 The dataset includes 1339610 records from 3809 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008637-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e5vx8x
title: Occurrence Download

description: A dataset containing 1144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Picea abies Link"
 ]
}

 The dataset includes 1144 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014849-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2xyi4t
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heteropoda leprosa Simon, 1884"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003515-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.czf62p
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Scaura latitarsis (Friese, 1900)"
 ]
}

 The dataset includes 37 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015860-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8s8rk8
title: Occurrence Download

description: A dataset containing 1949 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lespedeza procumbens Michx."
 ]
}

 The dataset includes 1949 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0337092-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rxhjfm
title: Occurrence Download

description: A dataset containing 901 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spondias tuberosa Arruda"
 ]
}

 The dataset includes 901 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003515-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.78aeoo
title: Occurrence Download

description: A dataset containing 159425 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((98.25513 25.75854,97.4729 25.1521,97.15649 24.04468,98.75171 21.90228,101.01929 21.05169,101.7356 21.0564,102.21899 21.14429,102.91772 22.50444,101.14233 24.15076,98.25513 25.75854))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 159425 records from 301 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002326-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.o9xzbx
title: Occurrence Download

description: A dataset containing 3817 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lampsilis radiata (Gmelin, 1791)"
 ]
}

 The dataset includes 3817 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005234-190307172214381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.97eacp
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aleuritopteris albofusca (Baker) Pic.Serm."
 ]
}

 The dataset includes 144 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021919-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1m0nil
title: Occurrence Download

description: A dataset containing 779 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Python molurus (Linnaeus, 1758)"
 ]
}

 The dataset includes 779 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003515-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.edrezl
title: Occurrence Download

description: A dataset containing 412308 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Slovenia"
 ]
}

 The dataset includes 412308 records from 399 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002333-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6rqnll
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chilomys instans (Thomas, 1895)",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 80 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006228-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vnix32
title: Occurrence Download

description: A dataset containing 122870 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Seasearch Marine Surveys in Scotland"
 ]
}

 The dataset includes 122870 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003515-190307172214381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8hn9kd
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Thailand",
 "Year 1960-2019",
 "TaxonKey is Combretum yunnanense Exell"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002335-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y9h2f7
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Mesembryanthemum chilense Molina",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007655-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n4zsj9
title: Occurrence Download

description: A dataset containing 13987 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "TaxonKey is Myodes glareolus (Schreber, 1780)",
 "Year 1990-2022"
 ]
}

 The dataset includes 13987 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111172-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrrt8z
title: Occurrence Download

description: A dataset containing 705 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 {
 "or" : [
 "PublishingOrg is 8a471700-4ce8-11db-b80e-b8a03c50a862",
 "PublishingOrg is 53e59855-7653-4d3e-87cc-162021713823",
 "PublishingOrg is ff90b050-c256-11db-b71b-b8a03c50a862",
 "PublishingOrg is 55807027-6d78-46bd-b2cb-301295ee35aa",
 "PublishingOrg is d16f32bb-204f-4c07-95eb-6673e90225e9",
 "PublishingOrg is f0b6a090-a4c6-11d8-9534-b8a03c50a862",
 "PublishingOrg is 2aad1479-09dc-492b-9a4c-a959c42f90ea",
 "PublishingOrg is 66522820-055c-11d8-b84e-b8a03c50a862",
 "PublishingOrg is a26fb77a-67a4-4a15-b2c3-0c7b87ddb8e6",
 "PublishingOrg is 90fd6680-349f-11d8-aa2d-b8a03c50a862"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Prunus ilicifolia (Nutt. ex Hook. & Arn.) D.Dietr.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 705 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015863-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4wuep3
title: Occurrence Download

description: A dataset containing 20609 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leucaena leucocephala (Lam.) de Wit"
 ]
}

 The dataset includes 20609 records from 530 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0337096-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bmxchv
title: Occurrence Download

description: A dataset containing 218 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schizomussaenda henryi (Hutch.) X.F.Deng & D.X.Zhang"
 ]
}

 The dataset includes 218 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0179549-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6q4bfn
title: Occurrence Download

description: A dataset containing 1410 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Unknown evidence"
 ]
 },
 "TaxonKey is Cichla ocellaris Bloch & Schneider, 1801"
 ]
}

 The dataset includes 1410 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007668-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bq2bhj
title: Occurrence Download

description: A dataset containing 1631 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Issue is Coordinate rounded",
 "TaxonKey is Suiriri suiriri (Vieillot, 1818)"
 ]
}

 The dataset includes 1631 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004558-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uhf2rz
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Mammals of Korea: a review of their taxonomy, distribution and conservation status"
 ]
}

 The dataset includes 101 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140397-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.01xcse
title: Occurrence Download

description: A dataset containing 3430 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aphis gossypii Glover, 1877"
 ]
}

 The dataset includes 3430 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004558-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r0ntvq
title: Occurrence Download

description: A dataset containing 251744 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Herbarium - Instituto Nacional de Pesquisas da Amazônia (INPA)"
 ]
}

 The dataset includes 251744 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004558-171113114016250/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wbfna2
title: Occurrence Download

description: A dataset containing 798 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Daphne sericea Vahl"
 ]
}

 The dataset includes 798 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022512-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9dqiew
title: Occurrence Download

description: A dataset containing 441 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-78.31 -1.56,-78.31 -1.315,-78.05 -1.315,-78.05 -1.56,-78.31 -1.56))",
 "HasCoordinate is true",
 "TaxonKey is Amphibia",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 441 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004558-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bwfrcx
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is India",
 "TaxonKey is Acanthus ilicifolius L.",
 "Year 2000-2023"
 ]
}

 The dataset includes 57 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140391-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dl2iwz
title: Occurrence Download

description: A dataset containing 3041 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panthera onca (Linnaeus, 1758)"
 ]
}

 The dataset includes 3041 records from 134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004562-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9t2mg4
title: Occurrence Download

description: A dataset containing 503 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ophiostoma ulmi (Buisman) Nannf."
 ]
}

 The dataset includes 503 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140389-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.