cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.4d9q3p
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Beringraja stellulata (Jordan & Gilbert, 1880)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039105-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3851773_d6
title: Additional file 6: of Knowledge-guided gene prioritization reveals new insights into the mechanisms of chemoresistance

description: List of genes and drugs in each bicluster corresponding to Fig.Â 4. Also includes pathway enrichment analysis results of each of these biclusters. (XLSX 92 kb)
DOI: 10.6084/m9.figshare.c.3851773_d7.v1
title: Additional file 7: of Knowledge-guided gene prioritization reveals new insights into the mechanisms of chemoresistance

description: The drug sensitivity prediction obtained using ProGENI with different types of network and variations of ProGENI. (XLSX 65 kb)
DOI: 10.6084/m9.figshare.c.3851773_d7
title: Additional file 7: of Knowledge-guided gene prioritization reveals new insights into the mechanisms of chemoresistance

description: The drug sensitivity prediction obtained using ProGENI with different types of network and variations of ProGENI. (XLSX 65 kb)
DOI: 10.6084/m9.figshare.c.3851773_d8.v1
title: Additional file 8: of Knowledge-guided gene prioritization reveals new insights into the mechanisms of chemoresistance

description: The intersection of the top 500 genes identified for any pair of drugs using ProGENI (or Pearson correlation scheme), averaged over 100 repeats of this procedure based on the LCL dataset. (XLSX 87 kb)
DOI: 10.6084/m9.figshare.c.3851779_d3.v1
title: Additional file 3: of Bortezomib treatment induces a higher mortality rate in lupus model mice with a higher disease activity

description: is a table presenting significantly increased or decreased genes among the proteasome ubiquitin pathway, GADD45 signaling, and DNA damage induced 14-3-3 signaling. The genes which were significantly increased with Bz treatment and belong to the gene set of the proteasome ubiquitin pathway, and the genes which were significantly increased with Cyc treatment and belong to the gene set of GADD45 signaling and DNA damage induced 14-3-3 signaling were extracted with IPA analysis. (XLSX 10 kb)
DOI: 10.15468/dl.nrfxrg
title: Occurrence Download

description: A dataset containing 592 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-3.60645 50.41466,10.21427 50.45953,10.14654 61.36086,-3.6428 61.49156,-3.55869 59.43867,-3.60645 50.41466))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Amblyraja radiata (Donovan, 1808)",
 "Year 2000-2024"
 ]
}

 The dataset includes 592 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039106-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3851773_d8
title: Additional file 8: of Knowledge-guided gene prioritization reveals new insights into the mechanisms of chemoresistance

description: The intersection of the top 500 genes identified for any pair of drugs using ProGENI (or Pearson correlation scheme), averaged over 100 repeats of this procedure based on the LCL dataset. (XLSX 87 kb)
DOI: 10.6084/m9.figshare.c.3851767_d11.v1
title: Additional file 3: of Development of pathogenicity predictors specific for variants that do not comply with clinical guidelines for the use of computational evidence

description: Pathogenic variants. Each line corresponds to a variant, providing: the amino acid replacement and its location in the protein sequence, the UniProt code for the protein, the values of the contribution of the three biochemical/biophysical properties (Blosum62 elements, position specific scoring matrix elements and Shannon’s entropy) followed by the output of the pathogenicity predictions for the reference methods used in this work (for PolyPhen-2 we give the output of its two versions –HDIV and HVAR- although in this work we only used HDIV predictions), and ‘?’ is given when no output was provided by the method. The last column gives the dataset where the variant belongs, either VS228 or VS2168. (CSV 1616 kb)
DOI: 10.15468/dl.jue37q
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Wulfenia carinthiaca Jacq., Wulfenia blechicii subsp. rohlenae Lakusic, Wulfenia carinthiaca subsp. rohlenae Niederle, Wulfenia blechicii var. lanceolata Lakusic, Paederota wulfenia Willd., Wulfenia blechicii var. alpina Lakusic, Wulfenia blechicii Lakusic, Paederota nudicaulis Lam., Wulfenia carinthiaca var. rohlenae Niederle)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 57 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039107-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ju6njq
title: Occurrence Download

description: A dataset listing the 19611 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "TaxonKey is Animalia"
 ]
}

 The dataset's 19611 records were derived from 786 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039088-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3851833_d1.v1
title: Additional file 1: Table S1. of A fourth subtype of retinoic acid receptor-related orphan receptors is activated by oxidized all-trans retinoic acid in medaka (Oryzias latipes)

description: Tested compounds. (XLSX 11Â kb)
DOI: 10.15468/dl.kzyr9r
title: Occurrence Download

description: A dataset containing 365 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Beryx decadactylus Cuvier, 1829",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 365 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039108-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3851812_d11
title: Additional file 7 of Cell adhesion heterogeneity reinforces tumour cell dissemination: novel insights from a mathematical model

description: Full statistics for Fig. 7a (2). p-values from two-tailed t-tests for significance levels in Fig. 7a for fixed γ-values. p w -values were calculated with Welch tests as variances between samples were significantly (p f &lt;0.05) different. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3851812_d13
title: Additional file 9 of Cell adhesion heterogeneity reinforces tumour cell dissemination: novel insights from a mathematical model

description: Full statistics for Fig. 7b (2). p-values from two-tailed t-tests for significance levels in Fig. 7b for fixed γ-values. p w -values were calculated with Welch tests as variances between samples were significantly (p f &lt;0.05) different. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3851842_d2.v1
title: Additional file 2: Table S2. of High risk human papilloma viruses (HPVs) are present in benign prostate tissues before development of HPV associated prostate cancer

description: HPV sequences, HPV E7 protein, cytokeratin protein, PSA protein in benign prostate and subsequent prostate cancer in the same patients. (XLS 42Â kb)
DOI: 10.6084/m9.figshare.c.3851842_d1.v1
title: Additional file 1: Table S1. of High risk human papilloma viruses (HPVs) are present in benign prostate tissues before development of HPV associated prostate cancer

description: HPV identification in the TCGA prostate cancer series. (XLS 12457Â kb)
DOI: 10.6084/m9.figshare.c.3851842_d1
title: Additional file 1: Table S1. of High risk human papilloma viruses (HPVs) are present in benign prostate tissues before development of HPV associated prostate cancer

description: HPV identification in the TCGA prostate cancer series. (XLS 12457Â kb)
DOI: 10.6084/m9.figshare.c.3851842_d2
title: Additional file 2: Table S2. of High risk human papilloma viruses (HPVs) are present in benign prostate tissues before development of HPV associated prostate cancer

description: HPV sequences, HPV E7 protein, cytokeratin protein, PSA protein in benign prostate and subsequent prostate cancer in the same patients. (XLS 42Â kb)
DOI: 10.25345/c5k64b52q
title: MassIVE MSV000096689 - DDA_DIA_rawSpectra_of_sophora_flavescens_for_dereplication
title: For investigation of secondary metabolites of sophora flavescens, the sample was analyzed with data dependent acquisition and data independent acquisition mode. The result raw spectra were depoisited here. The accuracy of spectra were carefully checked.
DOI: 10.6084/m9.figshare.c.3852886_d1.v1
title: Additional file 1:  of Transcriptome sequencing in pediatric acute lymphoblastic leukemia identifies fusion genes associated with distinct DNA methylation profiles

description: Supplementary Tables S1-S13. (XLSX 1165 kb)
DOI: 10.6084/m9.figshare.c.3852880_d2.v1
title: Additional file 2 of Cooperative binding mitigates the high-dose hook effect

description: Matlab code used to produce Figs. 4 and 6. (M 1.28 kb)
DOI: 10.6084/m9.figshare.c.3852886_d1
title: Additional file 1:  of Transcriptome sequencing in pediatric acute lymphoblastic leukemia identifies fusion genes associated with distinct DNA methylation profiles

description: Supplementary Tables S1-S1﻿3. (XLSX 1165 kb)
DOI: 10.6084/m9.figshare.c.3852880_d2
title: Additional file 2 of Cooperative binding mitigates the high-dose hook effect

description: Matlab code used to produce Figs. 4 and 6. (M 1.28 kb)
DOI: 10.57745/2dhn9w
title: Chantilly_Presentation_Benevoles_2023.pdf

description: PDF du diaporama de présentation des résultats aux bénévoles (20/10/2023)
DOI: 10.15468/dl.fur66w
title: Occurrence Download

description: A dataset containing 230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Clinopodium graveolens (M.Bieb.) Kuntze, Acinos thubcrispus Klokov, Thymus graveolens M.Bieb., Thymus patavinus var. graveolens (M.Bieb.) Trevir., Ziziphora graveolens (M.Bieb.) Melnikov, Satureja graveolens (M.Bieb.) Caruel, Calamintha graveolens (M.Bieb.) Benth., Melissa graveolens (M.Bieb.) Benth., Acinos graveolens (M.Bieb.) Link)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 230 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039109-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14514098
title: Supplementary Tables for Bulk LC/MS and MSI Annotation Data

description: These files are related to the preprint Unified Mass Imaging Maps the Lipidome of Vertebrate Development available at https://www.biorxiv.org/content/10.1101/2024.08.20.608739v2

Supplementary Table 1 contains the set of all annotatable m/z detections (in rows) with metadata in columns including, but not limited to, lipid quantities, potential isobars, sum compositions, specific lipid species identified from LC/MS.

Supplementary Table 2 contains all information retrieved from bulk LC/MS quantification. These include 4 sheets: (1) lipid quantifications before normalization, (2) total protein content for each sample, (3) lipid quantifications after normalization, (4) a lipid transition table that lists lipid names with their precursor mz, retention time, ionisation and adduct.
DOI: 10.5281/zenodo.14514099
title: Supplementary Tables for Bulk LC/MS and MSI Annotation Data

description: These files are related to the preprint Unified Mass Imaging Maps the Lipidome of Vertebrate Development available at https://www.biorxiv.org/content/10.1101/2024.08.20.608739v2

Supplementary Table 1 contains the set of all annotatable m/z detections (in rows) with metadata in columns including, but not limited to, lipid quantities, potential isobars, sum compositions, specific lipid species identified from LC/MS.

Supplementary Table 2 contains all information retrieved from bulk LC/MS quantification. These include 4 sheets: (1) lipid quantifications before normalization, (2) total protein content for each sample, (3) lipid quantifications after normalization, (4) a lipid transition table that lists lipid names with their precursor mz, retention time, ionisation and adduct.
DOI: 10.6084/m9.figshare.c.3852955_d3
title: Additional file 3: of Evolutionary history of the mariner element galluhop in avian genomes

description: Fasta consensus sequences. (FASTA 6Â kb)
DOI: 10.6084/m9.figshare.c.3852946_d4
title: Additional file 13 of Draft de novo transcriptome assembly and proteome characterization of the electric lobe of Tetronarce californica: a molecular tool for the study of cholinergic neurotransmission in the electric organ

description: Cross-Annotated T. californica Transcripts Present in H. sapiens and C. milli. (XLSX 2211 kb)
DOI: 10.6084/m9.figshare.c.3852952_d3
title: Additional file 3: of Transcriptomic analysis of the response of Acropora millepora to hypo-osmotic stress provides insights into DMSP biosynthesis by corals

description: Predicted protein sequences from A. millepora considered as candidates for roles in DMSP production. (TXT 36 kb)
DOI: 10.6084/m9.figshare.c.3852964_d1.v1
title: Additional file 1: Table S1. of Green lacewings (Neuroptera: Chrysopidae) are commonly associated with a diversity of rickettsial endosymbionts

description: Sampling information for all individuals investigated in this study. (ODS 26 kb)
DOI: 10.15468/dl.f5e2ac
title: Occurrence Download

description: A dataset containing 2131 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Beryx splendens Lowe, 1834",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 2131 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039110-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3852964_d1
title: Additional file 1: Table S1. of Green lacewings (Neuroptera: Chrysopidae) are commonly associated with a diversity of rickettsial endosymbionts

description: Sampling information for all individuals investigated in this study. (ODS 26 kb)
DOI: 10.6084/m9.figshare.c.3852964_d2.v1
title: Additional file 2: Table S2. of Green lacewings (Neuroptera: Chrysopidae) are commonly associated with a diversity of rickettsial endosymbionts

description: NCBI accession numbers for all sequences created in this study. Missing accession numbers indicate that PCR was not successful for corresponding fragment. (ODS 24 kb)
DOI: 10.6084/m9.figshare.c.3852946_d5.v1
title: Additional file 14 of Draft de novo transcriptome assembly and proteome characterization of the electric lobe of Tetronarce californica: a molecular tool for the study of cholinergic neurotransmission in the electric organ

description: Cross-Annotated conserved SwissProt proteins shared between H. sapiens, T. californica and C. milli that have a coverage of 100% between H. sapiens and C. Milli. (XLSX 99.2 kb)
DOI: 10.6084/m9.figshare.c.3852964_d2
title: Additional file 2: Table S2. of Green lacewings (Neuroptera: Chrysopidae) are commonly associated with a diversity of rickettsial endosymbionts

description: NCBI accession numbers for all sequences created in this study. Missing accession numbers indicate that PCR was not successful for corresponding fragment. (ODS 24 kb)
DOI: 10.6084/m9.figshare.c.3852967_d2.v1
title: MOESM2 of Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation

description: Additional file 2. The 100 most induced genes in the l-N stage, sorted by their log2 mean-FC (R l-N ) values in the l-N stage in descending order; The 100 most repressed genes in the l-N stage, sorted according to their log2 mean-FC (R l-N ) values in ascending order; The top 100 most expressed genes at the time point N_0 that were classified as not fragmented.
DOI: 10.6084/m9.figshare.c.3852967_d5.v1
title: MOESM5 of Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation

description: Additional file 5. The annotation and additional information of all putative transcription factors, sorted by their log2 mean-FC (R l-N ) values in the l-N stage in ascending order.
DOI: 10.6084/m9.figshare.c.3852967_d5
title: MOESM5 of Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation

description: Additional file 5. The annotation and additional information of all putative transcription factors, sorted by their log2 mean-FC (R l-N ) values in the l-N stage in ascending order.
DOI: 10.6084/m9.figshare.c.3852946_d21.v1
title: Additional file 5 of Draft de novo transcriptome assembly and proteome characterization of the electric lobe of Tetronarce californica: a molecular tool for the study of cholinergic neurotransmission in the electric organ

description: Cross-Annotation and GO Analysis of the SwissProt proteins that have a coverage of 70% or higher to T. cali MetaORFeome proteins. (XLSX 855 kb)
DOI: 10.6084/m9.figshare.c.3852946_d20
title: Additional file 4 of Draft de novo transcriptome assembly and proteome characterization of the electric lobe of Tetronarce californica: a molecular tool for the study of cholinergic neurotransmission in the electric organ

description: T. californica MetaTranscriptome. Transcripts IDs and their origin. (XLSX 2806 kb)
DOI: 10.6084/m9.figshare.c.3852946_d20.v1
title: Additional file 4 of Draft de novo transcriptome assembly and proteome characterization of the electric lobe of Tetronarce californica: a molecular tool for the study of cholinergic neurotransmission in the electric organ

description: T. californica MetaTranscriptome. Transcripts IDs and their origin. (XLSX 2806 kb)
DOI: 10.6084/m9.figshare.c.3852997_d5.v1
title: Additional file 5: of High resolution measurement of DUF1220 domain copy number from whole genome sequence data

description: Annotation of DUF1220 domains and exons in hg38. (BED 49 kb)
DOI: 10.6084/m9.figshare.c.3852946_d21
title: Additional file 5 of Draft de novo transcriptome assembly and proteome characterization of the electric lobe of Tetronarce californica: a molecular tool for the study of cholinergic neurotransmission in the electric organ

description: Cross-Annotation and GO Analysis of the SwissProt proteins that have a coverage of 70% or higher to T. cali MetaORFeome proteins. (XLSX 855 kb)
DOI: 10.6084/m9.figshare.c.3852997_d5
title: Additional file 5: of High resolution measurement of DUF1220 domain copy number from whole genome sequence data

description: Annotation of DUF1220 domains and exons in hg38. (BED 49 kb)
DOI: 10.6084/m9.figshare.c.3852997_d6.v1
title: Additional file 6: of High resolution measurement of DUF1220 domain copy number from whole genome sequence data

description: Alignment of DUF1220 proteins. (ALN 94 kb)
DOI: 10.6084/m9.figshare.c.3852997_d6
title: Additional file 6: of High resolution measurement of DUF1220 domain copy number from whole genome sequence data

description: Alignment of DUF1220 proteins. (ALN 94 kb)
DOI: 10.6084/m9.figshare.c.3852946_d23.v1
title: Additional file 7 of Draft de novo transcriptome assembly and proteome characterization of the electric lobe of Tetronarce californica: a molecular tool for the study of cholinergic neurotransmission in the electric organ

description: Cross-Annotated T. californica Transcripts Present in C. milli. (XLSX 2201 kb)
DOI: 10.6084/m9.figshare.c.3852946_d22.v1
title: Additional file 6 of Draft de novo transcriptome assembly and proteome characterization of the electric lobe of Tetronarce californica: a molecular tool for the study of cholinergic neurotransmission in the electric organ

description: Proteome IDs of Blast Results and Reverse Blast Hit Results. (XLSX 2887 kb)
DOI: 10.6084/m9.figshare.c.3852946_d23
title: Additional file 7 of Draft de novo transcriptome assembly and proteome characterization of the electric lobe of Tetronarce californica: a molecular tool for the study of cholinergic neurotransmission in the electric organ

description: Cross-Annotated T. californica Transcripts Present in C. milli. (XLSX 2201 kb)
DOI: 10.6084/m9.figshare.c.3852946_d22
title: Additional file 6 of Draft de novo transcriptome assembly and proteome characterization of the electric lobe of Tetronarce californica: a molecular tool for the study of cholinergic neurotransmission in the electric organ

description: Proteome IDs of Blast Results and Reverse Blast Hit Results. (XLSX 2887 kb)
DOI: 10.15468/dl.zkh2gs
title: Occurrence Download

description: A dataset listing the 97 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "TaxonKey is Protozoa"
 ]
}

 The dataset's 97 records were derived from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039094-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3853012_d2
title: Additional file 2: Table S1. of The urinary microbiota of men and women and its changes in women during bacterial vaginosis and antibiotic treatment

description: List of raw and final sequencing results as well as all metadata. (XLSX 2040Â kb)
DOI: 10.6084/m9.figshare.c.3853021_d4.v1
title: Additional file 3: Table S2. of Proteomics informed by transcriptomics for characterising differential cellular susceptibility to Nelson Bay orthoreovirus infection

description: Primer sequences used in PaKiT03 and L929 for Real-time PCR (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3853021_d4
title: Additional file 3: Table S2. of Proteomics informed by transcriptomics for characterising differential cellular susceptibility to Nelson Bay orthoreovirus infection

description: Primer sequences used in PaKiT03 and L929 for Real-time PCR (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3853021_d5.v1
title: Additional file 4: Table S3. of Proteomics informed by transcriptomics for characterising differential cellular susceptibility to Nelson Bay orthoreovirus infection

description: Transcripts with an adjusted p-value â ¤0.05 and significantly differentially expressed in PaKiT03 cells as determined by Deseq in R at 8 hpi and 24 hpi. Genes are annotated according to BLASTx. (XLSX 1715Â kb)
DOI: 10.6084/m9.figshare.c.3853030_d2
title: Additional file 2: of Essential genome of Campylobacter jejuni

description: Essential genes of C. jejuni NCTC 11168. This xlsx file contains Microsoft Excel spreadsheet: SH1-SH4. (XLSX 342Â kb)