cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27051040
title: BIRDBASE: A Global Database of Avian Biogeography, Conservation, Ecology and Life History Traits

description: BIRDBASE is a global avian trait database with data on 78 traits of all bird species (11,589), genera (2398), families (254), and orders (44) based on the most recent avian taxonomies published in October 2024 (eBird/Clements v2024), January 2025 (HBW/BirdLife 9.1), March 2025 (IOC v15.1), and including all the species in the first unified checklist of the birds of the world published in June 2025 (AviList). 

We compiled species-level ecological data from a variety of published datasets, ornithological publications and the first author's field observations of over 9300 bird species. Data were primarily compiled from 367 ornithological sources, including regional books, field guides, focused datasets, and primary literature. Most of these data were collated from the Handbook of the Birds of the World/Handbook of the Birds of the World Alive, now Birds of the World, augmented with other sources including BirdLife International, the ornithological literature and our unpublished field observations. 

The dataset is provided in an Excel file, with separate worksheets for trait values, trait definitions, nest details and data sources. The dataset is available in the Figshare repository for public use.

The database contains one row per species for all 11,589 species. Additional explanations for the database columns are provided in the Legend worksheet of the database Excel spreadsheet, which also contains both the database content and the source list as separate worksheets. 

We included 78 traits in 10 major categories: conservation, geographic distribution, morphology, elevational distribution, habitat, diet, social behavior, reproductive behavior, demography, and mobility. Traits include conservation status (2024 IUCN Red List16), latitudinal distribution, biogeographical realm, island endemism, body mass, elevational limits, primary habitat, habitat breadth, primary diet, diet breadth, ecological specialization, sociality, clutch size, nest type and placement, and movement (Figure 2).
DOI: 10.6084/m9.figshare.27051040.v1
title: BIRDBASE: A Global Database of Avian Biogeography, Conservation, Ecology and Life History Traits

description: BIRDBASE is a global avian trait database with data on 78 traits of all bird species (11,589), genera (2398), families (254), and orders (44) based on the most recent avian taxonomies published in October 2024 (eBird/Clements v2024), January 2025 (HBW/BirdLife 9.1), March 2025 (IOC v15.1), and including all the species in the first unified checklist of the birds of the world published in June 2025 (AviList). 

We compiled species-level ecological data from a variety of published datasets, ornithological publications and the first author's field observations of over 9300 bird species. Data were primarily compiled from 367 ornithological sources, including regional books, field guides, focused datasets, and primary literature. Most of these data were collated from the Handbook of the Birds of the World/Handbook of the Birds of the World Alive, now Birds of the World, augmented with other sources including BirdLife International, the ornithological literature and our unpublished field observations. 

The dataset is provided in an Excel file, with separate worksheets for trait values, trait definitions, nest details and data sources. The dataset is available in the Figshare repository for public use.

The database contains one row per species for all 11,589 species. Additional explanations for the database columns are provided in the Legend worksheet of the database Excel spreadsheet, which also contains both the database content and the source list as separate worksheets. 

We included 78 traits in 10 major categories: conservation, geographic distribution, morphology, elevational distribution, habitat, diet, social behavior, reproductive behavior, demography, and mobility. Traits include conservation status (2024 IUCN Red List16), latitudinal distribution, biogeographical realm, island endemism, body mass, elevational limits, primary habitat, habitat breadth, primary diet, diet breadth, ecological specialization, sociality, clutch size, nest type and placement, and movement (Figure 2).
DOI: 10.5065/d6707zqr
title: INDOEX: NCAR/NSF C-130 Multichannel Cloud Radiometer (MCR) Data. Version 1.0

description: This dataset contains binary files from NCAR's Multichannel Cloud Radiometer (MCR) obtained aboard the NCAR/NSF C-130 aircraft during the Indian Ocean Experiment (INDOEX).
DOI: 10.34810/data240
title: Large-scale, multi-temporal remote sensing of palaeo-river networks

description: JavaScript code to be implemented in Google Earth Engine(c) for large-scale, multi-temporal remote sensing of palaeo-river networks.&lt;br/&gt;

&lt;br&gt;This research presents a seasonal multi-temporal approach to the detection of palaeo-rivers over large areas based on long-term vegetation dynamics and spectral decomposition techniques. Twenty-eight years of Landsat 5 data, a total of 1711 multi-spectral images, have been bulk processed using Google Earth Engine© Code Editor and cloud computing infrastructure.&lt;br/&gt;
description: The research presented has been carried out as part of the TwoRains projectt, which is a multi-disciplinary investigation of climate change and the Indus civilization in northwest India.
DOI: 10.6084/m9.figshare.28678271
title: Source data for "Parallel within-host evolution alters key virulence factors in an opportunistic Klebsiella pneumoniae clone during a hospital outbreak"

description: Source data for all figures in the manuscript.
DOI: 10.6084/m9.figshare.28678271.v1
title: Source data for "Parallel within-host evolution alters key virulence factors in an opportunistic Klebsiella pneumoniae clone during a hospital outbreak"

description: Source data for all figures in the manuscript.
DOI: 10.15468/dl.zraq8m
title: Occurrence Download

description: A dataset containing 65859 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dodonaea viscosa)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 65859 records from 546 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035686-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29554745
title: A wireless optogenetic stimulation system for long-term function evaluation of mice forelimb with sub-nerve resolution

description: Supporting data for the figures in the manuscript and supplemantary information
DOI: 10.6084/m9.figshare.29554745.v1
title: A wireless optogenetic stimulation system for long-term function evaluation of mice forelimb with sub-nerve resolution

description: Supporting data for the figures in the manuscript and supplemantary information
DOI: 10.5065/d6377718
title: INDOEX: NCAR/NSF C-130 Low Rate (1 sps) Navigation, State Parameter, and Microphysics Flight Level Data. Version 1.1

description: This dataset contains netCDF data obtained aboard the NCAR/NSF C-130 aircraft during the Indian Ocean Experiment (INDOEX) . This dataset contains the Low Rate (LRT, 1sps) Flight Level production data.
DOI: 10.5281/zenodo.14832687
title: ALD on particles: Literature collection and dataset

description: A dataset collected from scientific publications on Atomic Layer Deposition (ALD) on particle substrates, limited to English-language literature with DOI handle and containing experimental data on the topic. Only particles in powder form are considered, excluding immobilized particles on a substrate, pelletized particles, particle-based electrodes etc. Besides bibliographic data, the dataset quotes basic qualitative values from the original works. The initial dataset contains 802 publications from the years 1988 through 2023. 

Update 07-02-2025: Revised list now containing 797 articles.

Update 09-07-2025: Preview of corresponding review article available here https://arxiv.org/abs/2506.17725
DOI: 10.6084/m9.figshare.28953254
title: Chip-scale reconfigurable carbon nanotube physical unclonable functions

description: The data supporting the research findings in the study "Chip-scale reconfigurable carbon nanotube physical unclonable functions"
DOI: 10.6084/m9.figshare.28953254.v1
title: Chip-scale reconfigurable carbon nanotube physical unclonable functions

description: The data supporting the research findings in the study "Chip-scale reconfigurable carbon nanotube physical unclonable functions"
DOI: 10.5065/d6zk5dzw
title: NSF C-130 Radiation Actinic Flux Spectroradiometer. Version 1.0

description: This data set contains the Radiation Actinic Flux Spectroradiometer data taken aboard the NSF/NCAR C-130 aircraft during the Indian Ocean Experiment (INDOEX). The NCAR C-130 platform measured spectrally resolved solar flux. Two spectroradiometers were integrated in zenith and nadir locations to provide upwelling, downwelling and total actinic flux spectra. The data are available as space delimited ASCII files.
DOI: 10.6084/m9.figshare.28532399
title: Synchronization of global peak river discharge since the 1980s

description: Scripts for global flood network paper.
DOI: 10.6084/m9.figshare.28532399.v1
title: Synchronization of global peak river discharge since the 1980s

description: Scripts for global flood network paper.
DOI: 10.15468/dl.pcch5b
title: Occurrence Download

description: A dataset containing 18592 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((4.45 55.50851,2.65 36.63803,35.05 36.31639,34.05 55.50851,4.45 55.50851))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gavia immer"
 ]
}

 The dataset includes 18592 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035704-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28879004
title: Atypical cortical feedback underlies failure to process contextual information in the superior colliculus of Scn2a<sup>+/-</sup> autism model mice

description: This zip file contains the data set and analysis codes for the following paper: Ferrarese and Asari (2025) bioRxiv 2023.10.31.564905 doi: https://doi.org/10.1101/2023.10.31.564905
DOI: 10.6084/m9.figshare.28879004.v1
title: Atypical cortical feedback underlies failure to process contextual information in the superior colliculus of Scn2a<sup>+/-</sup> autism model mice

description: This zip file contains the data set and analysis codes for the following paper: Ferrarese and Asari (2025) bioRxiv 2023.10.31.564905 doi: https://doi.org/10.1101/2023.10.31.564905
DOI: 10.6084/m9.figshare.29971474
title: Munc13-1 Restoration Mitigates Presynaptic Pathology in Spinal Muscular Atrophy

description: Data related to Manuscript "Munc13-1 Restoration Mitigates Presynaptic Pathology in Spinal Muscular Atrophy"
DOI: 10.5065/d6tt4p81
title: NSF C-130 Meteorology Airborne Imaging Microwave Radiometer (AIMR). Version 1.0

description: This data contains the C-130 Airborne Imaging Microwave Radiometer (AIMR) in "geo" and NetCDF format. No additional quality control was performed on this dataset by UCAR/JOSS.
DOI: 10.6084/m9.figshare.29971474.v1
title: Munc13-1 Restoration Mitigates Presynaptic Pathology in Spinal Muscular Atrophy

description: Data related to Manuscript "Munc13-1 Restoration Mitigates Presynaptic Pathology in Spinal Muscular Atrophy"
DOI: 10.15468/dl.np8wb8
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Flemingia strobilifera",
 "Country is Dominican Republic",
 "HasCoordinate is true"
 ]
}

 The dataset includes 41 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035706-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f6yg26
title: Occurrence Download

description: A dataset containing 15006 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true",
 "Year is 1928"
 ]
}

 The dataset includes 15006 records from 190 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035688-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jnmtqr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Flemingia strobilifera",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035707-250920141307145/datasets/export for details.
DOI: 10.5065/d6q23xk2
title: NSF C-130 Photography Video Camera, forward/left/down. Version 1.0

description: This dataset consists of mpg movie files from video tape (VHS) from each flight of the NSF/NCAR EC-130Q Hercules that occured during INDOEX. The video was shot from left side, forward, and down exterior cameras mounted on the aircraft. Video is available for RF15-18.
DOI: 10.15468/dl.f7se6a
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Flemingia strobilifera",
 "Country is Papua New Guinea",
 "HasCoordinate is true"
 ]
}

 The dataset includes 29 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035708-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5065/d6k935vq
title: INDOEX: Airborne Imaging Microwave Radiometer (AIMR) [NCAR/EOL/RSF] - raw AIMR tape data. Version 1.0

description: This data set includes Airborne Imaging Microwave Radiometer (AIMR) measurements obtained from the NSF/NCAR C-130 aircraft (Tail Number: N130AR) during the Indian Ocean Experiment (INDOEX) 1999 experiment. These tar files contain raw aimr Output files.
DOI: 10.5065/d6fj2f3z
title: INDOEX: Scanning Aerosol Backscatter Lidar - Field Dorade format. Version 1.0

description: This dataset contains SABL (Scanning Aerosol Backscatter Lidar) field format files obtained by the NSF/NCAR C-130 during the Indian Ocean Experiment (INDOEX).
DOI: 10.6084/m9.figshare.29371796
title: NONAN GaitPrint: An IMU gait database of healthy middle-aged adults

description: Despite comprising approximately 25% of the total U.S. population and 41% of its workforce in 2023, middle-aged adults (whom we define as 36–55 years) face a stark disparity between their demographic representation and the available research data dedicated to them. This dataset contributes to addressing that gap as the final addition to the Nonlinear Analysis Core (NONAN) GaitPrint database, focusing specifically on middle-aged adults. Designed to complement our previously published datasets on young and older adults using an identical protocol, this dataset includes full-body inertial measurement data during self-paced overground walking on a 200 m indoor track of 50 middle-aged adults (36 − 55 years old; 21 men and 29 women; age: 46.1 ± 5.9 years; height: 173.43 ± 8.42 cm; body mass: 87.14 ± 18.87 kg) collected across 18 four-minute trials conducted over two days. Exhaustive documentation, subject and trial characteristics, supplementary code, and results accompany the dataset. The technical validation comprises five distinct analyses, comparative assessments with existing literature, and interpretative insights into the findings.
DOI: 10.6084/m9.figshare.29371796.v1
title: NONAN GaitPrint: An IMU gait database of healthy middle-aged adults

description: Despite comprising approximately 25% of the total U.S. population and 41% of its workforce in 2023, middle-aged adults (whom we define as 36–55 years) face a stark disparity between their demographic representation and the available research data dedicated to them. This dataset contributes to addressing that gap as the final addition to the Nonlinear Analysis Core (NONAN) GaitPrint database, focusing specifically on middle-aged adults. Designed to complement our previously published datasets on young and older adults using an identical protocol, this dataset includes full-body inertial measurement data during self-paced overground walking on a 200 m indoor track of 50 middle-aged adults (36 − 55 years old; 21 men and 29 women; age: 46.1 ± 5.9 years; height: 173.43 ± 8.42 cm; body mass: 87.14 ± 18.87 kg) collected across 18 four-minute trials conducted over two days. Exhaustive documentation, subject and trial characteristics, supplementary code, and results accompany the dataset. The technical validation comprises five distinct analyses, comparative assessments with existing literature, and interpretative insights into the findings.
DOI: 10.6084/m9.figshare.29828585
title: Date File 2 Genomic feature / characteristics of AR2

description: Genomic feature / characteristics of AR2
DOI: 10.6084/m9.figshare.29828585.v1
title: Date File 2 Genomic feature / characteristics of AR2

description: Genomic feature / characteristics of AR2
DOI: 10.6084/m9.figshare.28587746
title: Soil carbon stock densities in mangrove and forested wetland ecosystems of Panama

description: Mangrove and forested wetland ecosystems represent critical carbon reservoirs, yet uncertainties in belowground carbon stock estimates hinder their inclusion in climate mitigation strategies. Here we present soil carbon stock density data for mangrove and forested wetland ecosystems across Panama’s Pacific and Caribbean regions. We established 45 permanent plots across marine and riparian mangrove typologies and 14 permanent plots in forested wetlands, collecting 544 soil cores to quantify soil carbon stocks. Soil samples were analyzed for bulk density, organic matter content, and organic carbon concentration, enabling calculation of carbon stock density at 0.3 m and 0.5 m depth profiles. Soil carbon stock density estimates differed among marine mangroves, riparian mangroves, and forested wetlands, reflecting ecosystem heterogeneity including mineral versus peat soils. These data provide essential ground-truth measurements contributing to Panama’s national carbon accounting and climate commitments for the Land Use, Land-Use Change, and Forestry sector. The standardized methodology facilitates integration with regional carbon monitoring efforts across Central America and the Caribbean, supporting blue carbon database development and carbon mapping validation initiatives.
DOI: 10.6084/m9.figshare.28587746.v1
title: Soil carbon stock densities in mangrove and forested wetland ecosystems of Panama

description: Mangrove and forested wetland ecosystems represent critical carbon reservoirs, yet uncertainties in belowground carbon stock estimates hinder their inclusion in climate mitigation strategies. Here we present soil carbon stock density data for mangrove and forested wetland ecosystems across Panama’s Pacific and Caribbean regions. We established 45 permanent plots across marine and riparian mangrove typologies and 14 permanent plots in forested wetlands, collecting 544 soil cores to quantify soil carbon stocks. Soil samples were analyzed for bulk density, organic matter content, and organic carbon concentration, enabling calculation of carbon stock density at 0.3 m and 0.5 m depth profiles. Soil carbon stock density estimates differed among marine mangroves, riparian mangroves, and forested wetlands, reflecting ecosystem heterogeneity including mineral versus peat soils. These data provide essential ground-truth measurements contributing to Panama’s national carbon accounting and climate commitments for the Land Use, Land-Use Change, and Forestry sector. The standardized methodology facilitates integration with regional carbon monitoring efforts across Central America and the Caribbean, supporting blue carbon database development and carbon mapping validation initiatives.
DOI: 10.15468/dl.zdtkhb
title: Occurrence Download

description: A dataset containing 107979 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is United States of America",
 "OccurrenceStatus is Present",
 "TaxonKey is Sciurus niger"
 ]
}

 The dataset includes 107979 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035665-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5065/d69s1pbs
title: In Situ Carbon monoxide (CO) mixing ratio. Version 1.0

description: This data set contains carbon monoxide concentrations from the NSF/NCAR C-130. The NSF/NCAR C-130 platform measured carbon monoxide using a modified TECO Model 48 gas filter correlation analyzer. The data cover the INDOEX C-130 research flights occurring between 24 February, 1999 and 24 March, 1999.
DOI: 10.6084/m9.figshare.28440143
title: CXCR4 chemokine receptor - HIV envelope spike recognition and cognate CXCL12 inhibition

description: CCR5 and CXCR4 both act as HIV co-receptors, though CXCR4 is less explored. CXCR4 binds the chemokine CXCL12 to regulate cellular processes and mediate HIV entry, a process that CXCL12 inhibits. Using cryo-EM, we investigate HIV-2 envelope (Env) spike recognition by CXCR4 and how CXCL12 inhibit this interaction. We discover that CXCR4 unexpected forms a tetramer, both alone and in complex. It binds CXCL12 with 4:8 and 8:8 stoichiometries, with the CXCL12 N-terminus inserting into the CXCR4 pocket. Structures of CXCR4-gp120HIV-2 complex show one or two gp120 molecules per CXCR4 tetramer, with the V3 loop occupying the major sub-pocket of CXCR4 through deep embedment of its GFKF motif. The CXCL12 N-terminus chashes with gp120HIV-2 V3 loops, explain its inhibitory effect. Docking analyses of other HIV antagonists further clarify their mechanisms. The CXCR4-gp120HIV-1 model illustrate how V3 loop residues define co-receptor specificity, offering insights into co-receptor switching and therapeutic design.
DOI: 10.6084/m9.figshare.28440143.v1
title: CXCR4 chemokine receptor - HIV envelope spike recognition and cognate CXCL12 inhibition

description: CCR5 and CXCR4 both act as HIV co-receptors, though CXCR4 is less explored. CXCR4 binds the chemokine CXCL12 to regulate cellular processes and mediate HIV entry, a process that CXCL12 inhibits. Using cryo-EM, we investigate HIV-2 envelope (Env) spike recognition by CXCR4 and how CXCL12 inhibit this interaction. We discover that CXCR4 unexpected forms a tetramer, both alone and in complex. It binds CXCL12 with 4:8 and 8:8 stoichiometries, with the CXCL12 N-terminus inserting into the CXCR4 pocket. Structures of CXCR4-gp120HIV-2 complex show one or two gp120 molecules per CXCR4 tetramer, with the V3 loop occupying the major sub-pocket of CXCR4 through deep embedment of its GFKF motif. The CXCL12 N-terminus chashes with gp120HIV-2 V3 loops, explain its inhibitory effect. Docking analyses of other HIV antagonists further clarify their mechanisms. The CXCR4-gp120HIV-1 model illustrate how V3 loop residues define co-receptor specificity, offering insights into co-receptor switching and therapeutic design.
DOI: 10.5065/d6610xnt
title: GCIP/LSA-NW 99 Ancillary Station List. Version 1.0

description: The GEWEX Continental-Scale International Project (GCIP) Large Scale Area-Northwest (LSA-NW) Enhanced Annual Observing Period (EAOP) 1999 datasets contain data collected from over ten thousand stations in the GCIP LSA-NW EAOP 1999 domain and time periods. The station information provided defines each station in the GCIP LSA-NW EAOP 1999 datasets with station location, name, frequency of observation, etc.