cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19373307.v1
title: Additional file 8 of Extensive evaluation of ATAC-seq protocols for native or formaldehyde-fixed nuclei

description: Additional file 8: Supplementary Table S8. Differential motif deviation analysis results generated using chromVAR in fixed samples. Files contain results for differential deviation score tests between clusters for all motifs. Column 1 is the human motif ID from JASPAR CORE database; Columns 2 and 3 indicate the p value and adjusted p value calculated by the differentialDeviations function in chromVAR; Column 4 shows the difference between the mean of bias corrected deviations in 37°C samples and the mean of bias corrected deviations in 55°C samples.
DOI: 10.6084/m9.figshare.19373310
title: Additional file 9 of Extensive evaluation of ATAC-seq protocols for native or formaldehyde-fixed nuclei

description: Additional file 9: Supplementary Table S9. List of ATAC-seq primers used for PCR and corresponding samples for each barcode. The Nextera N5 primer (Ad1_noMX) and the N7 primer “Ad2.1” and other N7 primer sequences (besides the barcodes) were obtained from [5]. Column 1 (“Name”) indicates the name we used for each primer. Column 2 (“Barcode in Fastq”) shows the sequence returned by the sequencer for that particular primer. Column 3 (“Oligo”) shows the sequence of the primers. Columns 4-11 specify the sample ID, buffer, transposition temperature, enzyme source, fixation state, nuclei input, replicate ID, and sample type for each sample indexed by the corresponding barcode.
DOI: 10.6084/m9.figshare.19373310.v1
title: Additional file 9 of Extensive evaluation of ATAC-seq protocols for native or formaldehyde-fixed nuclei

description: Additional file 9: Supplementary Table S9. List of ATAC-seq primers used for PCR and corresponding samples for each barcode. The Nextera N5 primer (Ad1_noMX) and the N7 primer “Ad2.1” and other N7 primer sequences (besides the barcodes) were obtained from [5]. Column 1 (“Name”) indicates the name we used for each primer. Column 2 (“Barcode in Fastq”) shows the sequence returned by the sequencer for that particular primer. Column 3 (“Oligo”) shows the sequence of the primers. Columns 4-11 specify the sample ID, buffer, transposition temperature, enzyme source, fixation state, nuclei input, replicate ID, and sample type for each sample indexed by the corresponding barcode.
DOI: 10.6084/m9.figshare.19373304.v1
title: Additional file 7 of Extensive evaluation of ATAC-seq protocols for native or formaldehyde-fixed nuclei

description: Additional file 7: Supplementary Table S7. Differential motif deviation analysis results generated using chromVAR in native samples. Files contain results for differential deviation score tests between clusters for all motifs. Column 1 is the human motif ID from JASPAR CORE database; Column 2 shows the cluster of interest for each differential test; Columns 3 and 4 indicate the p value and adjusted p value calculated by the differentialDeviations function in chromVAR; Column 5 shows the difference between the mean of bias corrected deviations in the cluster of interest and the mean of bias corrected deviations in all other clusters.
DOI: 10.15468/dl.agv9mz
title: Occurrence Download

description: A dataset containing 4791 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Material sample, Material citation, Human Observation, Occurrence evidence)",
 "Country is Mexico",
 "DatasetKey is one of (Digitalización y Sistematización de las Colecciones Biológicas Nacionales del Instituto de Biología, UNAM (Plantas vasculares), MEXU/Asteraceae, Catálogo electrónico de especímenes depositados en el Herbario de la Universidad de Texas en Austin, Fase IV (Ejemplaresimagenes), Etapa final de la captura y catalogación del Herbario del Instituto de Ecología, A.C., Centro Regional del Bajío, Plant Resources Center, NMNH Extant Specimen Records (USNM, US), Digitalización y sistematización de las colecciones biológicas del INECOL (Herbario), Digitalización y sistematización de las colecciones biológicas del INECOL (Herbario), Tropicos MO Specimen Data)",
 "OccurrenceStatus is Present",
 "TaxonKey is Dahlia Cav."
 ]
}

 The dataset includes 4791 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022447-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18167/dvn1/mq9vxz
title: Sensory and instrumental acceptance thresholds of pounded yam stretchability/extensibility by UAC-FSA, Bénin

description: A main quality attribute of pounded yam is its extensibility/stretchability, with yams exhibiting high values ​​being preferred by consumers. This study assessed the sensory and instrumental acceptance thresholds of stretchability through consumer testing, quantitative descriptive analysis (QDA), Kieffer dough extensibility and dynamic rheology analyses performed on twenty varieties in two experiments. Significant differences were evidenced among yam varieties for all studied parameters. Furthermore, stretchability was predicted by instrumental extensibility by Kieffer dough method (R2 = 0.61) or G’-G” crossover (R2 = 0.77). A high stretchability is preferred by consumers, with the desirable sensory score above 8.01, on a 10 cm unstructured line scale, corresponding to biophysical targets values above 3.38 mm for kieffer dough extensibility (distance while stretching using texturometer) and below 1.52 kPa for G’-G” crossover (using rheometer). Thus, Kieffer dough textural or dynamic rheology analyses are practically relevant in understanding the extensibility of pounded yam, and can be carried out to screen the various yam genotypes and determine textural thresholds for pounded yam extensibility.
DOI: 10.6084/m9.figshare.19196144.v1
title: Thermic3_TRECA_Data

description: Recruitment, retention and decision making questionnaire data for the Thermic-3 trial which was part of the TRECA SWAT which evaluated the use of a paper and/or a multi media version of patient information for RCTs in children and young people.
DOI: 10.17632/6y7bjwtv6h.2
title: Clinical Manifestations and Treatment Outcomes of Pyoderma Gangrenosum on Rituximab Therapy: A Systematic Review - Supplemental Material

description: Supplemental material for 'Clinical Manifestations and Treatment Outcomes of Pyoderma Gangrenosum on Rituximab Therapy: A Systematic Review'. Each file corresponds to a supplementary table referenced within the article text.

Supplementary 1. Probability assessment of rituximab-induced PG based on the Adverse Drug Reaction Probability Scale by Naranjo et al.

Supplementary 2. List of included articles and contributory number of cases.
DOI: 10.17632/h2fzvzjtvb.1
title: Database 1

description: Database
DOI: 10.17632/26j7nw2sg8.1
title: Surveys of Debate-based learning in biomedicine

description: Surveys and instruments used for data collection and analysis
DOI: 10.5519/qd.k85xz7ir
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (54978 records)
DOI: 10.17632/v73vgcr9ky.1
title: Keller_Mindful_Interventions_in_Special_Education_Supplementary_Data

description: Supplementary data for a textbook entitled "Mindful Interventions in Special Education." Data contains HeartMath "libraries"--a summary of all the HeartMath data (using HRV data collected with software from the Institute of HeartMath) for a particular subject. Each library shows how many sessions each subject had, their average heart rate for each session, and the amount of red (low), blue (medium), and green (high) coherence achieved during each session. Also, there are two sample "writing dialogues" illustrating how writing can be used to enhance emotional awareness in children.
DOI: 10.48370/ofd/4mzzja
title: Prinobium carpini (Herbst, 1793), C-494

description: Coleoptera collection
DOI: 10.5281/zenodo.6138081
title: Mental health and alcohol use among patients attending a post-COVID-19 follow-up clinic: A cohort study.

description: Study dataset Abstract <strong>Background:</strong> Ongoing mental health problems following COVID-19 infection warrant greater examination. This study aimed to investigate psychiatric symptoms and problematic alcohol use among Long COVID patients.<br> <br> <strong>Methods: </strong>The study was conducted at the Mater Misericordiae University Hospital’s post-COVID-19 follow-up clinic in Dublin, Ireland. A prospective cohort study design was used encompassing assessment of patients’ outcomes at 2-4 months following an initial clinic visit (Time 1), and 7–14-month follow-up (Time 2). Outcomes regarding participants’ demographics, acute COVID-19 healthcare use, mental health, and alcohol use were examined.<br> <br> <strong>Results: </strong>The baseline sample’s (n = 153) median age = 43.5yrs (females = 105 (68.6%)). Sixty-seven of 153 patients (43.8%) were admitted to hospital with COVID-19, 9/67 (13.4%) were admitted to ICU, and 17/67 (25.4%) were readmitted to hospital following an initial COVID-19 stay. Sixteen of 67 (23.9%) visited a GP within seven days of hospital discharge, and 26/67 (38.8%) did so within 30 days. Seventeen of 153 participants (11.1%) had a pre-existing affective disorder. The prevalence of clinical range depression, anxiety, and PTSD scores at Time 1 and Time 2 (n = 93) ranged from 12.9% (Time 1 anxiety) to 22.6% (Time 1 PTSD). No statistically significant differences were observed between Time 1 and Time 2 depression, anxiety, and PTSD scores. Problematic alcohol use was common at Time 1 (45.5%) and significantly more so at Time 2 (71.8%). Clinical range depression, anxiety, and PTSD scores were significantly more frequent among acute COVID-19 hospital admission and GP attendance (30 days) participants, as well as among participants with lengthy ICU stays, and those with a previous affective disorder diagnosis.<br> <br> <strong>Conclusions: </strong>Ongoing psychiatric symptoms and problematic alcohol use in Long COVID populations are a concern and these issues may be more common among individuals with severe acute COVID-19 infection and /or pre-existing mental illness.
description: This study was funded by Ireland's Health Research Board (reference number: COV19-2020-123). The study contributes to a wider body of work being produced to attenuate the adverse effects of the COVID-19 pandemic on population health in Ireland (The North-Dublin COVID-19 Cohort ['ANTICIPATE'] Study).
DOI: 10.5281/zenodo.6138080
title: Mental health and alcohol use among patients attending a post-COVID-19 follow-up clinic: A cohort study.

description: Study dataset Abstract <strong>Background:</strong> Ongoing mental health problems following COVID-19 infection warrant greater examination. This study aimed to investigate psychiatric symptoms and problematic alcohol use among Long COVID patients.<br> <br> <strong>Methods: </strong>The study was conducted at the Mater Misericordiae University Hospital’s post-COVID-19 follow-up clinic in Dublin, Ireland. A prospective cohort study design was used encompassing assessment of patients’ outcomes at 2-4 months following an initial clinic visit (Time 1), and 7–14-month follow-up (Time 2). Outcomes regarding participants’ demographics, acute COVID-19 healthcare use, mental health, and alcohol use were examined.<br> <br> <strong>Results: </strong>The baseline sample’s (n = 153) median age = 43.5yrs (females = 105 (68.6%)). Sixty-seven of 153 patients (43.8%) were admitted to hospital with COVID-19, 9/67 (13.4%) were admitted to ICU, and 17/67 (25.4%) were readmitted to hospital following an initial COVID-19 stay. Sixteen of 67 (23.9%) visited a GP within seven days of hospital discharge, and 26/67 (38.8%) did so within 30 days. Seventeen of 153 participants (11.1%) had a pre-existing affective disorder. The prevalence of clinical range depression, anxiety, and PTSD scores at Time 1 and Time 2 (n = 93) ranged from 12.9% (Time 1 anxiety) to 22.6% (Time 1 PTSD). No statistically significant differences were observed between Time 1 and Time 2 depression, anxiety, and PTSD scores. Problematic alcohol use was common at Time 1 (45.5%) and significantly more so at Time 2 (71.8%). Clinical range depression, anxiety, and PTSD scores were significantly more frequent among acute COVID-19 hospital admission and GP attendance (30 days) participants, as well as among participants with lengthy ICU stays, and those with a previous affective disorder diagnosis.<br> <br> <strong>Conclusions: </strong>Ongoing psychiatric symptoms and problematic alcohol use in Long COVID populations are a concern and these issues may be more common among individuals with severe acute COVID-19 infection and /or pre-existing mental illness.
description: This study was funded by Ireland's Health Research Board (reference number: COV19-2020-123). The study contributes to a wider body of work being produced to attenuate the adverse effects of the COVID-19 pandemic on population health in Ireland (The North-Dublin COVID-19 Cohort ['ANTICIPATE'] Study).
DOI: 10.17632/vj2v8wv3xx.1
title: transcriptome analysis of adipose - derived stem cells in a gelatin sponge

description: these .cel files correspond to transcriptomes of adipose-derived stem cells in culture (Day 0 = D0) compared to thze same cells 8 days in standard 2D culture (2D) or in a gelatin sponge (sponge). biological triplicates were performed (1/2/3)
DOI: 10.17632/4xg5vmvcy2.1
title: priming database

description: Translation and Semantic Cross-language Priming
DOI: 10.17632/kbhxy8j4fk.1
title: Validation indexes

description: In this repository there are two files associated with the validation indices of a structural equation model.
DOI: 10.17632/m7n3zvg539.5
title: EcSeg: Semantic Segmentation of Metaphase Images Containing Extrachromosomal DNA

description: Dataset used to benchmark "EcSeg: Semantic Segmentation of Metaphase Images Containing Extrachromosomal DNA" by Rajkumar et al.
DOI: 10.6084/m9.figshare.16778818.v4
title: Dataset_for_SE.xlsx

description: This dataset is for the paper "Estimation of fluid salinity using coseismic electric signal generated by an earthquake".<br>The code relating to forward modeling in this paper will be accessible from https://pan.baidu.com/s/1ZJiGeFqO7OG9VNk60PJugA<br><br>Researchers who want to do academic corporations with us can email us and we would like to grant them access to the code.Corresponding authors: Yunhe Liu, liuyunhe@jlu.edu.cnYongxin Gao, yongxin_gao@foxmail.com<br>
DOI: 10.5281/zenodo.6323361
title: Dataset related to the manuscript: "An open-source integrated framework for the automation of citation collection and screening in systematic reviews"

description: Dataset related to the manuscript: “An open-source integrated framework for the automation of citation collection and screening in systematic reviews”, to be used together with the code stored at https://github.com/AD-Papers-Material/BART_SystReviewClassifier to reproduce the results. There are three datasets:<br> - The Record data collected from the online scientific databases;<br> - The session journal which describes the search session, i.e., how many records were collected and from which source, for each query/session pairs.<br> - The session data which is the outcome of the classification and review tasks;
description: This project was developed under the Joint Programming Initiative on Antimicrobial Resistance (JPIAMR) through the 7th call, project number 01KI1831 funded by BMBF and administrated by DLR Project Management Agency.
description: {"references": ["D'Ambrosio, A., Grundmann, H., & Donker, T. (2022). An open-source integrated framework for the automation of citation collection and screening in systematic reviews. arXiv preprint arXiv:2202.10033."]}
DOI: 10.5281/zenodo.6323360
title: Dataset related to the manuscript: "An open-source integrated framework for the automation of citation collection and screening in systematic reviews"

description: Dataset related to the manuscript: “An open-source integrated framework for the automation of citation collection and screening in systematic reviews”, to be used together with the code stored at https://github.com/AD-Papers-Material/BART_SystReviewClassifier to reproduce the results. There are three datasets:<br> - The Record data collected from the online scientific databases;<br> - The session journal which describes the search session, i.e., how many records were collected and from which source, for each query/session pairs.<br> - The session data which is the outcome of the classification and review tasks;
description: This project was developed under the Joint Programming Initiative on Antimicrobial Resistance (JPIAMR) through the 7th call, project number 01KI1831 funded by BMBF and administrated by DLR Project Management Agency.
description: {"references": ["D'Ambrosio, A., Grundmann, H., & Donker, T. (2022). An open-source integrated framework for the automation of citation collection and screening in systematic reviews. arXiv preprint arXiv:2202.10033."]}
DOI: 10.5281/zenodo.6320998
title: Data for Chromatin compaction precedes apoptosis in developing neurons by Rose et al.

description: Data for Chromatin compaction precedes apoptosis in developing neurons by Rose et al.
DOI: 10.6084/m9.figshare.13143668.v2
title: Track Data

description: Datasets containing track data from fluorescent bead experiments.<br>Processing code are available here:https://github.com/LouisFaure/coral_paper<br><br>
DOI: 10.17632/7wpws965xd.1
title: Sexual Self Concept and Relationship Status Satisfaction

description: Sexual Self Concept and Relationship Status Satisfaction
DOI: 10.17632/yf565sb4jz.2
title: Essential oils from Limnocitrus littoralis species in Southcentral coast of Vietnam

description: The essential oils of seeds, peels, and leaves from Limnocitrus littoralis (Miq.) Swingle growing wildly in three provinces belonging to the southcentral coast of Vietnam were extracted by hydrodistillation method. Organoleptic properties, specific gravity, refractive index, and optical rotation were analyzed according to international standards ISO (International Organization for Standardization) or AFNOR (French Association of Normalization) standard, at 25 oC. The chemical compositions of essential oils were analysed by GC and GC/MS methods. Essential oil constituents were identified by comparing their mass spectra with those of standard compounds registered in the NIST 2014 and NIST 2020 libraries. Moreover, the identification was also confirmed by collating the observed LRI (linear retention indices) of each constituent with those reported in the compilation of retention indices published by Adams. The observed LRI was calculated by using the equation propounded by van den Dool and Kratz to the homologous series of C9-C20 n-alkanes (Sigma-Aldrich). The relative percentage of each constituent in the oil was determined by peak area normalization
DOI: 10.17632/6m2d4rxc7n.1
title: Morphological and Plant functional traits of seedling of Quercus woods measured in Molise region (Italy)

description: These  data are referrerd to the seedlings of  three Quercus cerris woods, namely Selva di Castiglione (SC), Bosco della Ficora (BF) and Bosco di San Leo (BSL), developed in different lithological and physiographic conditions and subjected to different forestry practices in Molise region (Italy). The phenotypic parameters considered in this study were the stem and root length and the leaf area, whereas the plant functional traits (PFTs) were specific leaf area (SLA), leaf dry matter content (LDMC), leaf thickness (Lth) and chlorophyll content (CHL).  The measures are reffered to three leaves on each seedling.These numeric data can be analyzed with  basic statistical programs. These data can be compared with data collected in other sites.
DOI: 10.17632/f2sv8cp5y2.1
title: LINF_230014000

description: Exocyst complex component Sec10
Leishmania infantum (strain JPCM5)
DOI: 10.17632/v4ct2zpphy.1
title: LINF_230013800

description: UTP7
Leishmania infantum (strain JPCM5)
DOI: 10.17632/rnsfzxf3bn.1
title: LINF_230013300

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/c77482jywk.1
title: LINF_230013200

description: kinesin | KIN-C
Leishmania infantum (strain JPCM5)
DOI: 10.48370/ofd/iwzoq5
title: Ptilinus fuscus (Geoffroy, 1785), C-496

description: Coleoptera collection
DOI: 10.17632/sjvm2232pv.1
title: LINF_230013100

description: ubiquitin-activating enzyme E1 | UBA1a
Leishmania infantum (strain JPCM5)
DOI: 10.17632/x6mk5kjxyd.1
title: Filamentous GLS1 promotes ROS-induced apoptosis upon glutamine deprivation via insufficient asparagine synthesis. Jiang et al

description: Original western blot images
DOI: 10.6084/m9.figshare.19298912
title: Supplementary Material for: Psoriasis and Renal Disorders: A Large-Scale Population-Based Study in Children and Adults

description: <b><i>Background:</i></b> Psoriasis is a systemic disease with associated comorbidities. An association between renal diseases and psoriasis has previously been reported in adult patients, but little is known about renal diseases in pediatric patients. <b><i>Objective:</i></b> To determine whether there is an association between psoriasis and renal comorbidities in adult and pediatric patients. <b><i>Methods:</i></b> This cross-sectional study analyzed the database of the largest health care maintenance organization in Israel. Logistic regression was used to calculate odds ratios to compare 68,836 psoriatic patients and 68,836 controls with respect to renal comorbidities. <b><i>Results:</i></b> In adults, an inverse association emerged between psoriasis and dialysis (OR, 0.69; 95% CI, 0.58–0.83) and kidney transplantation (OR, 0.60; 95% CI, 0.43–0.83), a positive association with other kidney diseases (OR, 1.09; 95% CI, 1.05–1.13), and no association between psoriasis and chronic kidney disease (OR, 1.03; 95% CI, 0.98–1.09). Comparing 9,127 pediatric patients and 9,478 controls, no association was found between psoriasis and renal comorbidities, chronic kidney disease (OR, 0.90; 95% CI, 0.33–2.48), dialysis (OR, 2.06; 95% CI, 0.19–22.69), kidney transplantation (OR, 0.34; 95% CI, 0.04–3.29), or other kidney diseases (OR, 0.98; 95% CI, 0.79–1.23), even after a multivariate analysis adjusting for putative confounders. <b><i>Conclusion:</i></b> As opposed to adult patients, pediatric patients with psoriasis were not shown at risk of kidney diseases.