cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5126740.v1
title: Supplementary Material for: Sclerostin Declines during Hemodialysis and Appears in Dialysate

description: <b><i>Background/Aims:</i></b> Sclerostin, a soluble inhibitor of Wnt-signaling, inhibits bone formation. We assessed the impact of dialysis on serum sclerostin and whether sclerostin is detectable in effluent dialysates. <b><i>Methods:</i></b> In a prospective study of 54 prevalent hemodialysis patients, parameters of bone and mineral metabolism were assessed at the beginning and at the end of dialysis. In a subset of patients (n = 19) sclerostin was measured in serum at start, 1, 2, and 3 h of dialysis and in the effluent dialysate at several points in time. <b><i>Results:</i></b> Sclerostin serum levels decreased from median 71.4 pmol/l to 43.5 pmol/l during dialysis (p &lt; 0.0001). In patients with high pre-dialysis sclerostin serum levels, sclerostin was detected in the dialysate. Higher Kt/V correlated with greater relative decrease of sclerostin (<i>r</i> = 0.467; p = 0.001). <b><i>Conclusion:</i></b> Sclerostin is dialysable. Furthermore, sclerostin serum levels decrease during dialysis. Whether targeting lower sclerostin levels by means of improved dialysis adequacy has direct relevance to bone disease remains to be shown.
DOI: 10.17632/g9k8gg56s7
title: Post-translational modifications inducing protein motifs structural changes in patients with kidney cancer

description: The present data set covers peak lists (in a universal MGF format) of mass spectrometry data obtained from patients with renal cancer with stages I–IV (n=45, aged 56.7±9.8 years). Peak lists can be used for the data re-analysis with various search engine platforms to identify previously non-reported non-canonical PTMs found in serum samples of studied subjects. In addition, this data set contains excel datasheets with essential information on protein and peptides identification and accompanied meta-data (error, sequence coverage, fragments, scores, confident score, etc.) for each subject.

The folder "Results-20210912T111630Z-001" contains serach result files in *.xlsx format;
The folder "MGF_data" contains peak list files converted by the MS Converter (Proteowizard, version 3.0.203 64-bit) from the Q-Exactive HF (Thermo) RAW data.
DOI: 10.6084/m9.figshare.23551941.v1
title: 23 Nwestbladi. BUSCO completeness report. Metazoa. Illumina

description: Results of the BUSCO analysis over the genome of Nemertoderma westbladi sequenced with Illumina. The database was Metazoa_odb10
DOI: 10.6084/m9.figshare.23931741.v1
title: Philippines Morphodynamic Model - Prasojo etal 2023

description: The dataset is a Delft3D morphodynamic numerical model of Bislak River, Philippines. The model accompanies the manuscript submitted to a journal by the same authors. The users could open and run the model on Windows/Linux using Delft3D software (Deltares, 2021) or open the modelling results using QUICKPLOT, a visualisation software produced by Deltares.
DOI: 10.6084/m9.figshare.26934910.v1
title: Code book and interview questions

description: Code book and interview questions for paper under double blind review
DOI: 10.17632/5g8389w4y9
title: Carbon Emissions and related factors in China

description: The dataset includes CO2 emissions per capita[CO2], per capita real GDP[GDP], Service sector value added (% of GDP)[IND], Energy use in 10,000 tons of standard coal equivalent relative to GDP[EI], Share of clean energy in total primary energy consumption[CE], Share of the urban population in total population[URB], Share of increased population aged 60 years and above in the total population[AGING]. The unit of the observation is China. The data period is from 1960 to 2018.
DOI: 10.17632/jhxfpzcjsc
title: Dataset for Cost Benefit Analysis of Re-Developing the Panguna Copper-Gold Mine in Autonomous Region of Bougainville

description: The data comprise of historical and conceptual financial and fiscal revenues from the former Panguna copper mine and a hypothetical model of the option of re-developing the remaining resource of the Panguna copper-gold deposit. The data presented are summaries of the financial flows and direct revenue generated (both historical and conceptual) from sources as indicated.
DOI: 10.6084/m9.figshare.26780920.v1
title: Dataset: Physical Therapists' Prediction of Prognosis for Orthopedic and Neurological Cases: A Survey Study

description: <i>Background:</i> This study aimed to analyze the influence of ageist beliefs of practicing physical therapists (PTs) on their expectations concerning the behavior and outcomes of patients with orthopedic conditions. We hypothesized that stronger ageist beliefs would be related to expectations of worse outcomes and less treatment adherence in older patients compared to clinically identical younger patients.<i>Methods:</i> Seventy-one (71) practicing PTs with a mean age of 40 years (+/-10.44, range 24-67) were recruited via snowball sampling. Participants were randomly assigned a case involving either a 42-year-old (YCG) or an 85-year-old patient (OCG) s/p surgical repair of a femoral shaft fracture. Participants were asked questions related to their expectations concerning the patient’s clinical and functional outcomes, response and adherence to physical therapy, and patient responsibility for their own outcomes. To measure ageism, participants completed the Kogan Attitude Toward Old People Scale consisting of 34 paired (positive/negative) statements.
DOI: 10.6084/m9.figshare.23995746.v1
title: T5_Features.dat

description: This file contains the T5 transformer embedding for all the protein sequences
DOI: 10.6084/m9.figshare.29206458
title: Additional file 2 of Assessing the damage: analyzing the impact of the COVID-19 pandemic on accelerometer-assessed 24-hour movement behaviours in Brazilian adolescents

description: Additional file 2 is an HTML file including the R code and outputs.
DOI: 10.17632/d96dsk299d
title: [dataset] The Perception of Smallholder Farmers on the Impact of the Agricultural Credit on Coffee Productivity

description: The sampling frame was a list of SHCFs who obtained credit from Commodity Fund in 2007/2008 financial year in Kiambu County. It was thought after twenty-three years (2007/2008 to 2019/2020), the farmers would be in a position to give a valid perception on the impact that the agricultural credit had had on their coffee productivity. Further, the study only considered farmers who borrowed credit between KShs. 100,000 and KShs. 1 million. This is because those farmers who had more than 1 million had coffee farms between 4 to 8 acres and maintained their own farming records. This reduced the number of SHCFs from 3,589 to 87. The FCS of these SHCFs were identified from CF database and this formed a basis of random sampling 87 farmers who did not borrow credit for the study period – either from CF or other formal financial institutions. Thus the total sample size was 174. The summary of the data is as follows with Theme 1 to Theme 4, Risk perception and Regressand are binary. Theme 1 (demand for inputs) had six response variables: payment of leasing land (FDI1); buying of land (FDI2); accessing both printed and electronic information (FDI3); acquisition of agrochemicals and fertilizers (FDI4); acquisition of tree seedlings (FDI5); acquisition of manure (FDI6). Theme 2 (demand for labor) had five variables: increased use of child labor on the coffee farm (FDL1); increased use of labor from other members of your family apart from children on the farm (FDL2); increased use of hired labour (FDL3); increased use of ox-plough (FDL4); and increased use of tractor (FDL5). Theme 3 (Efficiency of production) had five variables: increased use of optimal combination of inputs (FIE1); increase in area of farming of coffee (FIE2); replacement of old trees with improved varieties (FIE3); increased access to extension services (FIE4); and increase of the cost of labour (FIE5) Theme 4 (returns) had five variables: annual profit per acre (FRT1); increase in numbers of shares for farmers in SACCO (FRT2); increase in farmers’ wealth (FRT3); and investing in other business (FRT4). Risk perception: had two response variables: risk of making loss (RISKL) and risk of loan default (RISKD) Regressand: impact of agricultural credit on coffee productivity (FPOR)
DOI: 10.6084/m9.figshare.11968962.v1
title: L2 Section, Sample 33. 67 Year Old Female

description: A 3 mm thick para-sagittal slice of L2 vertebra from an 67 year old female embedded in PMMA then micro-milled block surfaces carbon coated for quantitative 20kV BSE SEM.<br><br>Later polished to remove coating and then imaged with high-contrast X-Ray Micro-tomography at 90 kV with 30 micron voxel size.
DOI: 10.6084/m9.figshare.16834198.v3
title: Scopus 1900-2020: Growth in articles, abstracts, countries, fields, and journals

description: Data, graphs and online supplement from the paper: Scopus 1900-2020: Growth in articles, abstracts, countries, fields, and journals
DOI: 10.6084/m9.figshare.25928722.v2
title: Comparative long-term effectiveness of OnabotulinumtoxinA (Botox) and Anti CGRP in migraine prevention: A systematic review

description: PRISMA checklist and flowchart: Comparative long-term effectiveness of OnabotulinumtoxinA (Botox) and Anti CGRP in migraine prevention: A systematic review
DOI: 10.15468/dl.6654sd
title: Occurrence Download

description: A dataset containing 1654 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Persicaria vivipara (L.) Ronse Decr.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 1654 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013091-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.10006682.v7
title: Brainstem connectome

description: This data and software can be used to analyse the complete bilateral weighted and directed brain stem connectome of the laboratory rat.<br>
DOI: 10.17632/h2xpr9j5r2
title: Anatomical, physiological, cultural-ethnic and psychological aspects of foreign students adaptation during study in Medical Universities

description: This article is investigating comparative analysis of anatomical, physiological and psycho-emotional adaptation indicators of 100 male and 100 female first-year students of the international medical faculty in Osh, Kyrgyzstan. Control groups were consisted of 100 male and 100 female local students of the same age, residing in the Osh city and region. Anthropometry was determined by 50 indicators, such as bio-impedance analysis of body composition, functional tests with exercise and breathe holding.
DOI: 10.6084/m9.figshare.11791698.v3
title: DepMap 20Q1 Public

description: This dataset contains the results of Avana library CRISPR-Cas9 genome-scale knockout (prefixed with Achilles) as well as mutation, copy number and gene expression data (prefixed with CCLE) for cancer cell lines as part of the Broad Institute’s Cancer Dependency Map project. We have repackaged our fileset to include all quarterly-updating datasets produced by DepMap.<br>The Avana CRISPR-Cas9 genome-scale knockout data has expanded to include 739 cell lines, the RNAseq data includes 1270 cell lines, and the copy number data includes 1713 cell lines. Please see the README files for details regarding data processing pipeline procedures updates.<br>As our screening efforts continue, we will be releasing additional cancer dependency data on a quarterly basis for unrestricted use. For the latest datasets available, further analyses, and to subscribe to our mailing list visit https://depmap.org.<br>Descriptions of the experimental methods and the CERES algorithm are published in http://dx.doi.org/10.1038/ng.3984. Some cell lines were process using copy number data based on the Sanger Institute whole exome sequencing data (COSMIC: http://cancer.sanger.ac.uk.cell_lines, EGA accession number: EGAD00001001039) reprocessed using CCLE pipelines. A detailed description of the pipelines and tool versions for CCLE expression can be found here: https://github.com/broadinstitute/gtex-pipeline/blob/v9/TOPMed_RNAseq_pipeline.md.<br>v2 changes: The sample_info.csv file in version 1 was missing lineage information for some cell lines. Version 2 corrects this.<br><br>v3 changes: UACC62_SKIN_CJ1_RESISTANT has been removed from Public 19Q4 Achilles files due to an issue with fingerprinting. Values for this cell line have been NAed in the following files: Achilles_gene_effect.csv, Achilles_gene_effect_unscaled.csv, Achilles_gene_dependency.csv, Achilles_logfold_change.csv, Achilles_raw_readcounts.csv.
DOI: 10.6084/m9.figshare.26072956.v1
title: Heightened lateral habenula activity during stress produces brainwide and behavioral substrates of susceptibility

description: Data from Heightened lateral habenula activity during stress produces brainwide and behavioral substrates of susceptibility (https://www.biorxiv.org/content/10.1101/2023.11.06.565681v1). Code for analysis at https://github.com/annazhuk/CSDS_LHb.
DOI: 10.6084/m9.figshare.28743142.v1
title: Sustainable mitigation and management of segregated organic wastes: a socio-economic-environmental analysis for metropolitan cities

description: Organic waste upsurges with rapid urbanization and incessant population growth. To restrain this trend and lessen environmental impacts, sustainable management of food waste imposes an ambitious target of resource recovery and mitigating greenhouse gas emissions. This study quantifies environmental impacts and socio-economic benefits of municipal solid waste (MSW) management as a proof-of-concept case study for the Lima, Peru. Economic feasibility and life cycle assessment studies were used to compare the efficiency of segregated organic waste for scenarios such as landfilling and composting. Resource recovery, GHG emissions, and revenues are assessed to decide the environmental contour and downstream strategies. It was found that composting has less environmental impact in 11 out of 12 life cycle impact categories (ReCiPe method) during collection, processing, and distribution of 1 ton of waste as functional unit. Composting resulted in 40% less climate impact with global warming potential (GWP) of 476.20 kg CO<sub>2</sub>eq whereas landfilling showed 785.81 kg CO<sub>2</sub>eq GWP. Additionally, organic waste to compost conversion rate of 13%, can bring positive upshots to economy and society. This study is instrumental in MSW management, decision-making, and mitigate climate change in line with United Nations Sustainable Development Goals (UN-SDGs) for sustainable society.
DOI: 10.6084/m9.figshare.28750511.v1
title: RF data

description: PRFs and SRFs employed in the study
DOI: 10.6084/m9.figshare.14192000.v8
title: EP_paper

description: Previous studies have shown that pairs of interacting transcription factors (TFs) bind to enhancers and promoters, which contribute to their physical interactions. However, to date, we have limited knowledge about these interacting TF pairs. To identify such TF pairs, we systematically studied the co-occurrence of TF-binding motifs in interacting enhancer-promoter (EP) pairs in seven human cell lines. We discovered hundreds of motif pairs that significantly co-occur in enhancers and promoters of interacting EP pairs. We demonstrated that these motif pairs are biologically meaningful and significantly enriched with motif pairs of known interacting TF pairs. We also showed that the identified motif pairs facilitated the discovery of the interacting EP pairs.
DOI: 10.17632/xmcvfyzrpg
title: Use Intention of Mobile Music and Audio Platforms Among Middle-aged and Older Chinese Adults

description: This data set presents the user interview and questionnaire survey data in the paper Use Intention of Mobile Music and Audio Platforms Among Middle-aged and Older Chinese Adults. The interview outline and the corresponding user answer records are provided as follows. The questionnaire details and user questionnaire data are also shared in the data set. The data is for readers' reference.
DOI: 10.6084/m9.figshare.23807400.v2
title: Data of "Evolution of crystallographic preferred orientations of ice sheared to high strains by equal-channel angular pressing"

description: All files with "Montaged" in the name are orientation data obtained from EBSD with a step size of 30 micron. These data are used for analyzing the CPO. The ".ctf" files are MATLAB data processed from EBSD and EDS data, containing ice phase from EBSD and graphite phase from EDS. These data are used for plotting the microstructure. In the name: ECAP_AA_B_C, AA is experiment number, B is pass number, and C is the map number. ".xlsx" files are microstructure data obtained from CTF data. GS is grain size (μm), AR is aspect ratio, and SPO is shape preferred orientations (rad).
DOI: 10.6084/m9.figshare.25360726.v2
title: data

description: Water Body Extraction from High Spatial Resolution Remote Sensing Images Based on Enhanced U-Net and Multi-scale Information Fusion
DOI: 10.17632/xgw6bg3g8h
title: Dataset for gait analysis and assessment of fall risk for older adults

description: This five-part dataset is intended for human gait analysis in an older adult population (37 women and seven men; age 69.98 ± 8.57 years, body mass index 27.71 ± 4.57). Part 1 compromises demographic data for the 44 participants, along with the results of the Short Physical Performance Battery (SPPB) motor function test and the Mini-Mental State Examination (MMSE). We used the MMSE to ensure the participants could understand the experimental protocol instructions. Part 2 presents the anthropometric measurements of the participants. Part 3 shows the results for each item of the Gait component of the Performance Oriented Mobility Assessment (POMA-G). Part 4 contains five files per participant, storing motion-capture data for the lower limb in the Coordinate 3D (C3D) format. These files were generated using a Vicon motion analysis system, consisting of 24 reflective markers and seven cameras (Vantage V5) sampled at 100 Hz. Part 5 contains 26 gait parameters for each C3D file obtained using Nexus 2.9.3.
DOI: 10.6084/m9.figshare.24598788.v1
title: Supplementary Material for: Long-Term Structural and Functional Assessment of Doyne Honeycomb Retinal Dystrophy Following Nanosecond 2RT Laser Treatment. Case Series.

description: Introduction. Doyne honeycomb retinal dystrophy (DHRD), or autosomal dominant radial drusen, is a genetic disease caused by pathogenic variants of the epidermal growth factor-(EGF)-containing fibulin-like extracellular matrix protein 1 EFEMP1 gene and is characterized by the formation of subretinal drusenoid deposits. In a previous study, we reported the short-term beneficial effects of nanosecond laser treatment (2RT) on retinal function in DHRD. The aim of the present report is to describe the findings of a long-term follow-up of retinal structure/function in a small case series of patients with DHRD who underwent 2RT treatment. Case presentation. Three DHRD patients (case 1, male, and cases 2 and 3, two sister females, age range 41-46) with EFEMP1 pathogenic variant (c.1033C&gt;T; p.R345W) and drusenoid deposits at the posterior pole were examined at baseline and after 2RT treatment, at regular intervals (every 2-4 months) up to 30 months. All three patients underwent one or two treatment sessions in one or both eyes during the follow-up period. Case 3 was treated with only the left eye (LE). Each patient underwent a full ophthalmologic examination, spectral domain optical coherence tomography (OCT), central perimetry with frequency doubling technology (FDT), and mesopic and photopic Ganzfeld electroretinograms. Compared to baseline findings, during follow-up, visual acuity improved in both eyes in case 1 and LE in case 2, while it decreased in the right eye (RE) in case 2 and LE in case 3; perimetric sensitivity was stable in case 1 and improved in both eyes in cases 2 and 3; and electroretinogram amplitude improved in cases 1 and 2, and was stable in case 3 (both eyes). OCT central macular thickness and retinal structure were stable in all cases. None of the patients had treatment-related side effects. Conclusion. This is the first report showing that in a long-term follow-up, 2RT treatment in DHRD may improve or stabilize some retinal function parameters without significant structural changes.
DOI: 10.6084/m9.figshare.29015144.v1
title: Between Trust and Exit

description: Dataset, and codes of logistic regression with outputs
DOI: 10.17632/f3722v4pg9
title: Does users’ perception matter in continuous intention to use Fintech technology and services in Kenya?

description: Data collection Data was collected in Nairobi county, Kasarani constituency from May 1st, 2019 to 1st June 2019. The main target group in the study were entrepreneurs who owned shops and market stalls. However, clients who were present at the shops or stalls during the interviews, were also given a chance to participate in the study. It is believed that persons with businesses would seize the opportunity to utilise the soft loans offered the various Fintech service providers in Kenya to expand their businesses. Equally, the age participation in the current study was 18 years and over. A total of 351 questionnaires were collected with the help of two research assistants who were standing by to answer any queries from the participants and thus there were no incomplete questionnaires. Nevertheless, 9 questionnaires were excluded from the study because they had unengaged responses. The final usable questionnaires were 342. Methodology The Extended Post-Acceptance model by Lim, Kim, Hur, and Park (2018) was tested using the data. Confirmatory factor analysis was performed using AMOS version 24. A 10,000 replication bootstraps was performed as one way of validating the multivariate model used in the current study. Equally, the bias -corrected confidence intervals was set at 95% confidence level. Results The finding on users’ knowledge of the services has a significant positive effect on perceived security (β =0.808, p &lt;0.001) of short-term credit services offered by Fintech’s in Nairobi, supporting hypothesis H1. Perceived security has a significant and positive effect on confirmation (β =0.734, p &lt;0.001) and perceived usefulness (β =0.852, p &lt;0.001) of short-term credit services offered by Fintech’s thus supporting hypotheses H2a and H2b. Confirmation has no significant effect on perceived usefulness ((β =0.031, p = 0.786) thus rejecting hypothesis H3a. However, confirmation has a significant positive effect on satisfaction (β =0.533, p = 0.001), supporting hypothesis H3b. Perceived usefulness has a significant positive effect on satisfaction (β =0.332, p = 0.004), supporting hypothesis H4a. However, perceived usefulness has no significant effect on continuous intention to use Fintech services (β =0.003, p = 0.991), thus rejecting hypothesis H4b. User’s satisfaction has a positive effect on continuous intention to use Fintech services (β =0.593, p = 0.003). All the confidence levels where at 95%. Conclusion The study revealed that Kenyans will continue to use Fintech technologies and its credit services if they remain useful, secure, satisfactory and offer high expectation upon usage. Reference Lim, S. H., Kim, D. J., Hur, Y., & Park, K. (2018). An Empirical Study of the Impacts of Perceived Security and Knowledge on Continuous Intention to Use Mobile Fintech Payment Services. International Journal of Human–Computer Interaction, 1-13.