cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive9860.20251217.10
title: Myxococcus virescens Thaxter 1892 emend. Lang et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9861.20241212.9.2
title: Myxococcus virescens Thaxter 1892 emend. Lang et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0077883.10fu
title: SH0077883.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive9861.20251217.10
title: Myxococcus virescens Thaxter 1892 emend. Lang et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0077884.10fu
title: SH0077884.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive9862.20241212.9.2
title: Myxococcus virescens Thaxter 1892 emend. Lang et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9862.20251217.10
title: Myxococcus virescens Thaxter 1892 emend. Lang et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0077885.10fu
title: SH0077885.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0077886.10fu
title: SH0077886.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive9863.20241212.9.2
title: Myxococcus virescens Thaxter 1892 emend. Lang et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9863.20251217.10
title: Myxococcus virescens Thaxter 1892 emend. Lang et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.haa4s8
title: Occurrence Download

description: A dataset containing 470318 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Branta canadensis (Linnaeus, 1758)",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 470318 records from 125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017927-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7aqheg
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "TaxonKey is one of (Alouatta palliata (Gray, 1849))"
 ]
}

 The dataset includes 67 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017935-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gyaze2
title: Occurrence Download

description: A dataset containing 3775 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyclothone braueri Jespersen & Tåning, 1926",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3775 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017936-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14098929
title: The anomalous magmatism in the southern part of the Santos basin, and the non-continuous salt layer over Abimael Ridge - Gravity data

description: Gravity grids used in the article entitled: "The anomalous magmatism in the southern part of the Santos basin, and the non-continuous salt layer over Abimael Ridge".  Publisher link:https://www.sciencedirect.com/science/article/pii/S0895981123002468. DOI: https://doi.org/10.1016/j.jsames.2023.104435

File types: Surfer V7 type rasters, compacted as zip files. These files are compatible with QGIS and Oasis Montaj softwares.  

Coord Sys: UTM23S Sirgas 2000.   


For detailed descriptions, see Mohriak and Szameitat (2023).



Related reference: Mohriak, W. U., & Szameitat, L. (2023). The anomalous magmatism in the southern part of the Santos basin, and the non-continuous salt layer over Abimael Ridge. Journal of South American Earth Sciences, 128, 104435.
DOI: 10.5281/zenodo.14098928
title: The anomalous magmatism in the southern part of the Santos basin, and the non-continuous salt layer over Abimael Ridge - Gravity data

description: Gravity grids used in the article entitled: "The anomalous magmatism in the southern part of the Santos basin, and the non-continuous salt layer over Abimael Ridge".  Publisher link:https://www.sciencedirect.com/science/article/pii/S0895981123002468. DOI: https://doi.org/10.1016/j.jsames.2023.104435

File types: Surfer V7 type rasters, compacted as zip files. These files are compatible with QGIS and Oasis Montaj softwares.  

Coord Sys: UTM23S Sirgas 2000.   


For detailed descriptions, see Mohriak and Szameitat (2023).



Related reference: Mohriak, W. U., & Szameitat, L. (2023). The anomalous magmatism in the southern part of the Santos basin, and the non-continuous salt layer over Abimael Ridge. Journal of South American Earth Sciences, 128, 104435.
DOI: 10.5281/zenodo.14104213
title: The anomalous magmatism in the southern part of the Santos basin, and the non-continuous salt layer over Abimael Ridge - Gravity data

description: Gravity grids used in the article entitled: "The anomalous magmatism in the southern part of the Santos basin, and the non-continuous salt layer over Abimael Ridge".  Publisher link:https://www.sciencedirect.com/science/article/pii/S0895981123002468. DOI: https://doi.org/10.1016/j.jsames.2023.104435

File types: Surfer V7 type rasters, compacted as zip files. These files are compatible with QGIS and Oasis Montaj softwares.  

Coord Sys: UTM23S Sirgas 2000.   


For detailed descriptions, see Mohriak and Szameitat (2023).



Related reference: Mohriak, W. U., & Szameitat, L. (2023). The anomalous magmatism in the southern part of the Santos basin, and the non-continuous salt layer over Abimael Ridge. Journal of South American Earth Sciences, 128, 104435.
DOI: 10.15468/dl.k32xge
title: Occurrence Download

description: A dataset containing 511 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gonostoma denudatum Rafinesque, 1810",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 511 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017942-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f5bycj
title: Occurrence Download

description: A dataset containing 631 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phyllorhiza punctata von Lendenfeld, 1884"
 ]
}

 The dataset includes 631 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017943-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gueu43
title: Occurrence Download

description: A dataset containing 873 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is United States of America",
 "DatasetKey is iNaturalist Research-grade Observations",
 "GadmGid is one of (USA.36_1, USA.18.92_1, USA.49.35_1, USA.15.59_1)",
 "TaxonKey is Trachemys scripta elegans (Wied, 1838)"
 ]
}

 The dataset includes 873 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017944-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.7846156
title: Data for "The Glucocorticoid Receptor is Required for Efficient Aldosterone-Induced Transcription by the Mineralocorticoid Receptor"

description: This deposit contains all the single-molecule trajectories reported in "The Glucocorticoid Receptor is Required for Efficient Aldosterone-Induced Transcription by the Mineralocorticoid Receptor".


To access the tracks, open the mat file in MATLAB. This contains a MATLAB table with the following fields:


summary_table.cell_protein{i} identifies the ith dataset i.e. cell line + protein + treatment.


summary_table.X{i}{j} is an Nx2 array of x and y coordinates (in microns) for track j in condition i. N is the number of localizations in that track.


Time interval between localizations is 200 ms.


Details on data acquisition and tracking parameters can be found in the associated manuscript.
DOI: 10.5281/zenodo.12570960
title: Data for "The glucocorticoid receptor potentiates aldosterone-induced transcription by the mineralocorticoid receptor"

description: This deposit contains all the single-molecule trajectories reported in "The glucocorticoid receptor potentiates aldosterone-induced transcription by the mineralocorticoid receptor".

To access the tracks, open the mat file in MATLAB. This contains a MATLAB table with the following fields:

summary_table.cell_protein{i} identifies the ith dataset i.e. cell line + protein + treatment.

summary_table.X{i}{j} is an Nx2 array of x and y coordinates (in microns) for track j in condition i. N is the number of localizations in that track.

Time interval between localizations is 200 ms.

Details on data acquisition and tracking parameters can be found in the associated manuscript.
DOI: 10.5281/zenodo.7846155
title: Data for "The glucocorticoid receptor potentiates aldosterone-induced transcription by the mineralocorticoid receptor"

description: This deposit contains all the single-molecule trajectories reported in "The glucocorticoid receptor potentiates aldosterone-induced transcription by the mineralocorticoid receptor".

To access the tracks, open the mat file in MATLAB. This contains a MATLAB table with the following fields:

summary_table.cell_protein{i} identifies the ith dataset i.e. cell line + protein + treatment.

summary_table.X{i}{j} is an Nx2 array of x and y coordinates (in microns) for track j in condition i. N is the number of localizations in that track.

Time interval between localizations is 200 ms.

Details on data acquisition and tracking parameters can be found in the associated manuscript.
DOI: 10.25345/c53n20s1j
title: MassIVE MSV000096592 - Improved Proteome-wide Succinylome Analysis by Data-Independent Acquisition Using High-Quality Succinyl Spectral Libraries
title: Protein post-translational modifications (PTMs) are crucial and dynamic modulators of protein functions, interactions, and localizations as well as biological pathways and cellular signaling. Lysine succinylation analysis remains challenging, but sophisticated workflows combining succinylated peptide enrichments and quantitative mass spectrometry approaches have revolutionized proteome-wide succinylome analysis. The implementation of data-independent acquisition (DIA)-mass spectrometry has greatly advanced the detection of low abundance succinylated peptides, succinylome coverage, identification reproducibility, and quantification accuracy. However, the complexity of DIA data requires dedicated data processing algorithms and tools, that typically rely on spectral libraries. These reference libraries can be generated from experimental data-dependent acquisition (DDA) acquisitions of representative study samples submitted to DDA database search engines for confident succinylated peptide identification and precise PTM site localization. Here, we describe how to build DDA PTM spectral libraries using various software tools, specifically Spectronaut (Biognosys), SpectroMine (Biognosys), and MSFragger (Nesvizhskii Lab). The generated libraries were imported into Skyline for the previously published DIA succinylome analysis of Sirtuin-5 knocked-out vs wild-type mouse brains in order to accurately quantify and visualize PTM-containing peptides.
DOI: 10.5281/zenodo.11406525
title: InSAR estimates of excess ground ice concentrations near the permafrost table, Kivalina, Alaska, USA

description: Each subfolder contains the posterior mean and variance of excess ice concentrations [dimensionless] near the permafrost table estimated from Sentinel-1 InSAR, stored as a geotiff file. The folders correspond to four different estimation configurations:




name
year
ebar period
input data


baseline
2019
(900 ◦C d, 2019-09-15)
2019-06-06 – 2019-08-29


later ebar
2019
(1000 ◦C d, 2019-09-15)
2019-06-06 – 2019-08-29


extra scene
2019
(900 ◦C d, 2019-09-15)
2019-06-06 – 2019-09-10


2018
2018
(900 ◦C d, 2018-09-15)
2018-06-11 – 2018-09-03
DOI: 10.5281/zenodo.11406526
title: InSAR estimates of excess ground ice concentrations near the permafrost table, Kivalina, Alaska, USA

description: Each subfolder contains the posterior mean and variance of excess ice concentrations [dimensionless] near the permafrost table estimated from Sentinel-1 InSAR, stored as a geotiff file. The folders correspond to four different estimation configurations:




name
year
ebar period
input data


baseline
2019
(900 ◦C d, 2019-09-15)
2019-06-06 – 2019-08-29


later ebar
2019
(1000 ◦C d, 2019-09-15)
2019-06-06 – 2019-08-29


extra scene
2019
(900 ◦C d, 2019-09-15)
2019-06-06 – 2019-09-10


2018
2018
(900 ◦C d, 2018-09-15)
2018-06-11 – 2018-09-03
DOI: 10.5281/zenodo.14278370
title: InSAR estimates of excess ground ice concentrations near the permafrost table, Kivalina, Alaska, USA

description: Each subfolder contains the posterior mean and variance of excess ice concentrations [dimensionless] near the permafrost table estimated from Sentinel-1 InSAR, stored as a geotiff file. The folders correspond to four different estimation configurations:




name
year
ebar period
input data


baseline
2019
(900 ◦C d, 2019-09-15)
2019-06-06 – 2019-08-29


later ebar
2019
(1000 ◦C d, 2019-09-15)
2019-06-06 – 2019-08-29


extra scene
2019
(900 ◦C d, 2019-09-15)
2019-06-06 – 2019-09-10


2018
2018
(900 ◦C d, 2018-09-15)
2018-06-11 – 2018-09-03
DOI: 10.15468/dl.x4ebdy
title: Occurrence Download

description: A dataset containing 70477 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-5.97014 39.82285,-5.97093 39.72029,-5.82955 39.71968,-5.82797 39.8259,-5.90501 39.8259,-5.90342 39.87407,-5.96855 39.87407,-5.97014 39.82285))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 70477 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017948-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.68v3sr
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cataetyx alleni (Byrne, 1906)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 45 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017949-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.7558777
title: Data for "Dynamic switching of transcriptional regulators between two distinct low-mobility chromatin states"

description: This deposit contains all the single-molecule trajectories reported in "Dynamic switching of transcriptional regulators between two distinct low-mobility chromatin states", Science Advances, 2023.


To access the tracks, open the mat file in MATLAB. This contains a MATLAB table with the following fields:


summary_table.cell_protein{i} identifies the ith dataset i.e. cell line + protein + treatment.


summary_table.X{i}{j} is an Nx2 array of x and y coordinates (in microns) for track j in condition i. N is the number of localizations in that track.


Time interval between localizations is 200 ms.


Details on data acquisition and tracking parameters can be found in the associated manuscript.
DOI: 10.5281/zenodo.7558778
title: Data for "Dynamic switching of transcriptional regulators between two distinct low-mobility chromatin states"

description: This deposit contains all the single-molecule trajectories reported in "Dynamic switching of transcriptional regulators between two distinct low-mobility chromatin states", Science Advances, 2023.


To access the tracks, open the mat file in MATLAB. This contains a MATLAB table with the following fields:


summary_table.cell_protein{i} identifies the ith dataset i.e. cell line + protein + treatment.


summary_table.X{i}{j} is an Nx2 array of x and y coordinates (in microns) for track j in condition i. N is the number of localizations in that track.


Time interval between localizations is 200 ms.


Details on data acquisition and tracking parameters can be found in the associated manuscript.
DOI: 10.21985/n2-6n8h-rz81
title: Cochlear Tuning in Early Aging Estimated with Three Methods
DOI: 10.15468/dl.n9azdc
title: Occurrence Download

description: A dataset containing 597016 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is LACM Vertebrate Collection"
 ]
}

 The dataset includes 597016 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017938-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y3qm7p
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phyllorhiza punctata von Lendenfeld, 1884"
 ]
}

 The dataset's 3 records were derived from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017941-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p6kqfq
title: Occurrence Download

description: A dataset containing 1978 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gonichthys cocco (Cocco, 1829)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1978 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017950-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b52pdd
title: Occurrence Download

description: A dataset containing 729 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Mazama temama (Kerr, 1792)",
 "Year 1999-2024"
 ]
}

 The dataset includes 729 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017951-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.