cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.t3d75
title: Data from: When does female multiple mating evolve to adjust inbreeding? Effects of inbreeding depression, direct costs, mating constraints, and polyandry as a threshold trait

description: Polyandry is often hypothesized to evolve to allow females to adjust the
 degree to which they inbreed. Multiple factors might affect such
 evolution, including inbreeding depression, direct costs, constraints on
 male availability, and the nature of polyandry as a threshold trait.
 Complex models are required to evaluate when evolution of polyandry to
 adjust inbreeding is predicted to arise. We used a genetically explicit
 individual-based model to track the joint evolution of inbreeding strategy
 and polyandry defined as a polygenic threshold trait. Evolution of
 polyandry to avoid inbreeding only occurred given strong inbreeding
 depression, low direct costs, and severe restrictions on initial versus
 additional male availability. Evolution of polyandry to prefer inbreeding
 only occurred given zero inbreeding depression and direct costs, and given
 similarly severe restrictions on male availability. However, due to its
 threshold nature, phenotypic polyandry was frequently expressed even when
 strongly selected against and hence maladaptive. Further, the degree to
 which females adjusted inbreeding through polyandry was typically very
 small, and often reflected constraints on male availability rather than
 adaptive reproductive strategy. Evolution of polyandry solely to adjust
 inbreeding might consequently be highly restricted in nature, and such
 evolution cannot necessarily be directly inferred from observed magnitudes
 of inbreeding adjustment.
description: PolyInbreeding_Code.tarThis compressed directory contains the 45 files needed to compile the code underlying the paper and run all simulations. Parameter values for simulations are set in the PolyIn.c file, which by default outputs three separate TXT files. The output files can be used in the PolyInbreeding_Analysis.R file to recreate all analyses and figures from the paper. This code is also publicly available, with additional documentation, on Brad Duthie's GitHub repository: https://github.com/bradduthie/PolyInbreed
DOI: 10.5061/dryad.q6188pm
title: Data from: Bio-inspired imager improves sensitivity in near-infrared fluorescence image-guided surgery

description: Image-guided surgery can enhance cancer treatment by decreasing, and
 ideally eliminating, positive tumor margins and iatrogenic damage to
 healthy tissue. Current state-of-the-art near-infrared fluorescence
 imaging systems are bulky and costly, lack sensitivity under surgical
 illumination, and lack co-registration accuracy between multimodal images.
 As a result, an overwhelming majority of physicians still rely on their
 unaided eyes and palpation as the primary sensing modalities for
 distinguishing cancerous from healthy tissue. Here we introduce an
 innovative design, comprising an artificial multispectral sensor inspired
 by the Morpho butterfly’s compound eye, which can significantly improve
 image-guided surgery. By monolithically integrating spectral tapetal
 filters with photodetectors, we have realized a single-chip multispectral
 imager with 1000× higher sensitivity and 7× better spatial co-registration
 accuracy compared to clinical imaging systems in current use. Preclinical
 and clinical data demonstrate that this technology seamlessly integrates
 into the surgical workflow while providing surgeons with real-time
 information on the location of cancerous tissue and sentinel lymph nodes.
 Due to its low manufacturing cost, our bio-inspired sensor will provide
 resource-limited hospitals with much-needed technology to enable more
 accurate value-based health care.
description: Dryad_CharacterizationDataThe file contains imager characterization data, such as quantum efficiency, fixed pattern noise, concentration detection, filter optical density, filter transmission data.
DOI: 10.5061/dryad.h5069
title: Data from: The effect of mood state on visual search times for detecting a target in noise: an application of smartphone technology

description: The study of visual perception has largely been completed without regard
 to the influence that an individual’s emotional status may have on their
 performance in visual tasks. However, there is a growing body of evidence
 to suggest that mood may affect not only creative abilities and
 interpersonal skills but also the capacity to perform low-level cognitive
 tasks. Here, we sought to determine whether rudimentary visual search
 processes are similarly affected by emotion. Specifically, we examined
 whether an individual’s perceived happiness level affects their ability to
 detect a target in noise. To do so, we employed pop-out and serial visual
 search paradigms, implemented using a novel smartphone application that
 allowed search times and self-rated levels of happiness to be recorded
 throughout each twenty-four-hour period for two weeks. This experience
 sampling protocol circumvented the need to alter mood artificially with
 laboratory-based induction methods. Using our smartphone application, we
 were able to replicate the classic visual search findings, whereby pop-out
 search times remained largely unaffected by the number of distractors
 whereas serial search times increased with increasing number of
 distractors. While pop-out search times were unaffected by happiness
 level, serial search times with the maximum numbers of distractors (n =
 30) were significantly faster for high happiness levels than low happiness
 levels (p = 0.02). Our results demonstrate the utility of smartphone
 applications in assessing ecologically valid measures of human visual
 performance. We discuss the significance of our findings for the
 assessment of basic visual functions using search time measures, and for
 our ability to search effectively for targets in real world settings.
description: Raw response
 dataExcel file for raw
 response data of the three tasks. Each sheet shows the data for one
 participant. The numeric data for the number touch task and visual search
 task represent response times (sec.), and the data for the self-state
 rating task represent slider response scores. Sessions that were missed by
 the participant are omitted.raw_response_data.xlsx
DOI: 10.5061/dryad.4sd0r
title: Data from: Parental coordination with respect to colour polymorphism in a crater lake fish

description: In many taxa, success in parental care requires the coordinated efforts of
 both parents. Given the evolutionary potential of parental performance, as
 well as phenotype-related behavioural differences, it is surprising that
 parental coordination in polymorphic species has attracted only very
 limited research attention. To redress this gap, I combined multiple
 approaches to assess parental performance and coordination of parental
 effort in the colour polymorphic and biparental cichlid fish, Amphilophus
 sagittae, in its natural crater lake habitat. I compared parents of the
 two colour morphs, dark and gold, as well as pairs that had mated colour
 assortatively ('same colour' pairs) versus disassortatively
 ('mixed' pairs). The two morphs differed in terms of a higher
 than expected number of single gold morph parents. Interestingly, parental
 coordination, in terms of the size of the defended territory and the rate
 of aggressive responses towards natural territory intruders, was lower in
 mixed than same colour pairs. Mixed pairs also had their territories in
 deeper water. However, no pair type differences in early survival of
 biparentally defended broods were detected. The findings contribute
 towards a better understanding of the role of parental coordination in
 polymorphic species, highlighting the importance of considering parental
 effort, coordination, and performance in the context of the dynamics of
 (colour) polymorphisms in the wild. Indeed, if the observed behavioural
 differences will translate into negative fitness effects for mixed pairs,
 parental performance can also provide a mechanism selecting for colour
 assortative mating and restricting gene flow under mating regimes that are
 not completely assortative.
description: Field study data-sets in
 ExcelEach of the field
 experiments and assays of the study, indicated by subheadings in the
 paper, has been given a separate Excel worksheet, with the exception of
 the assessment of aggression in natural encounters, which has two
 worksheets ('Natural encounters aggress rate' and 'Natural
 encounters distance').Data(Lehtonen).xls
DOI: 10.6073/pasta/54410b9e0f2fe762677e8ab1b1d1c986
title: Water quality data for Green Lakes Valley, 2000 - ongoing.

description: This dataset contains water quality measurements made on Green Lakes
 1, 2, 3, 4, 5, and Lake Albion. Green Lake 4 was initially sampled
 in 2000 and is ongoing. Ongoing sampling of Green Lakes 1 was
 started in 2014 and ongoing sampling of Lake Albion was started in
 2016. Water samples were collected for analysis of chlorophyll a and
 nutrient analysis (which is available in glvwatsolu.dm.data) and
 field measurements for pH, temperature, specific conductivity,
 dissolved oxygen (DO), % saturation, secchi depth, PAR. Secchi depth
 is recorded at the 0m row however it is a measurement of depth and
 so the units are meters. Most samples were collected between 0800
 and 1200 MST. The first sampling date each summer occurs shortly
 after the ice had melted. Data are collected from an inflatable raft
 at the point of deepest depth or from the lake inlet and outlet when
 surface flow is present. The majority of chlorophyll-a the
 measurements were taken at the surface (0m), the metalimnion (3m),
 and the hypolimnion nine (usually 8-11m). However, additional
 measurements were taken for side projects of the long-term dataset
 during several of the years and are included in this dataset. Water
 samples from the metalimnion or hypolimnion were collected using a
 Van Dorne sampler, and surface samples were collected as grab
 samples from the water column surface, the inlet and outlet. Field
 measurements were conducted using a YSI either DO or multiple probe
 meter (2014-2017, YSI MPS 556)(2018-ongoing, YSI ProPlus) and a
 Li-Cor meter with a quantum sensor. Chlorophyll-a was extracted from
 filtered samples and absorbance was measured before and after
 acidification to quantify chlorophyll a concentration.
DOI: 10.5061/dryad.j6p89
title: Data from: How do similarities in spatial distributions and interspecific associations affect the coexistence of Quercus species in the Baotianman National Nature Reserve, Henan, China

description: Congeneric species often have similar ecological characteristics and use
 similar resources. These similarities may make it easier for them to
 co-occur in a similar habitat but may also lead to strong competitions
 that limit their coexistence. Hence, how do similarities in congeneric
 species affect their coexistence exactly? This study mainly used spatial
 point pattern analysis in two 1 hm2 plots in the Baotianman National
 Nature Reserve, Henan, China, to compare the similarities in spatial
 distributions and interspecific associations of Quercus species. Results
 revealed that Quercus species were all aggregated under the complete
 spatial randomness null model, and aggregations were weaker under the
 heterogeneous Poisson process null model in each plot. The interspecific
 associations of Quercus species to non-Quercus species were very similar
 in Plot 1. However, they can be either positive or negative in different
 plots between the co-occurring Quercus species. The spatial distributions
 of congeneric species, interspecific associations with non-Quercus
 species, neighborhood richness around species, and species diversity were
 all different between the two plots. We found that congeneric species did
 have some similarities, and the closely related congeneric species can
 positive or negative associate with each other in different plots. The
 co-occurring congeneric species may have different survival strategies in
 different habitats. On one hand, competition among congenerics may lead to
 differentiation in resource utilization. On the other hand, their similar
 interspecific associations can strengthen their competitive ability and
 promote local exclusion to non-congeneric species to obtain more living
 space. Our results provide new knowledge for us to better understand the
 coexistence mechanisms of species.
description: two permanent 1 hm2
 plotsS.Dataset.Data of Plot 1 and
 Plot 2.xls
DOI: 10.5061/dryad.4775s65
title: Data from: Genetic variations in the SNP rs850807 reflect a trade-off between autism and paranoia symptom expressions: a comment on Crespi et al. 2018

description: [No abstract entered]
description: Crespi et al Data from:
 A genetic locus for paranoiaThese data were
 originally deposited by Crespi and colleagues (Crespi B, Read S, Salminen
 I, Hurd P. Data from: A genetic locus for paranoia. Dryad Digital
 Repository. 2018.) These data were used to test an alternative hypothesis
 to analyses in Crespi et al (Crespi B, Read S, Salminen I, Hurd P. A
 genetic locus for paranoia. Biol Lett. 2018;14(1).) Three columns were
 added to the original data, which reflect basic calculations for the
 analyses presented in this paper.Crespi_Data_rs850807_7Jul2018.xls
DOI: 10.5061/dryad.46tp6
title: Data from: Should scientists be required to use a model-based solution to adjust for possible distance-based detectability bias?

description: The most popular method used to gain an understanding of population trends
 or of differences in bird abundance among land condition categories is to
 use information derived from point counts. Unfortunately, various factors
 can affect one’s ability to detect birds, and those factors need to be
 controlled or accounted for so that any difference in one’s index among
 time periods or locations is an accurate reflection of differences in bird
 abundance and not differences in detectability. Avian ecologists could use
 appropriately sized fixed-area surveys to minimize the chance that they
 might be deceived by distance-based detectability bias, but the current
 method of choice is to use a modeling approach that allows one to account
 for distance-based bias by modeling the effects of distance on
 detectability or occupancy. I challenge the idea that modeling is the best
 approach to account for distance-based effects on the detectability of
 birds because the most important distance-based modeling assumptions can
 never be met. The use of a fixed-area survey method to generate an index
 of abundance is the simplest way to control for distance-based
 detectability bias and should not be universally condemned or be the basis
 for outright rejection in the publication process.
description: Hutto 2016_Ecological
 Applications_data for Figures 2 and 3Black-backed Woodpecker
 detection information from 7903 individual point count surveys conducted
 across western Montana. File includes abundance, fire severity surrounding
 the point, and distance information (if a bird was
 detected).ECOAPPS2016_data for figures 2
 and 3.csv
DOI: 10.25919/ax1m-3r67
title: Long-term project observations for project P456 semester 2025OCTS_14

description: The Parkes Pulsar Timing Array (PPTA) project has three primary goals: (a) detection of gravitational waves from astronomical sources, (b) establishment of a pulsar timescale, and (c) improvement of our understanding of Solar-system dynamics. We are now in an exciting regime where a signal detected in our (and other data sets) has the form expected for a gravitational wave background. We, along with the international community, are now working hard to either confirm or deny this result, and to determine the astrophysical origin of this signal. With this proposal, we aim to maintain our pre-eminent position in the field. This is a continuing proposal for which observations of millisecond pulsars (MSPs) will continue to improve bounds on ultra-low-frequency gravitational waves until they are detected with confidence. Continued Parkes observations will remain valuable at least until the first stage of the SKA is able to improve on our sensitivity and observing cadence. Even after the gravitational wave background is detected, continued observations will resolve the background origin and individual sources will be identified; advancing the nascent field of gravitational wave astronomy.
DOI: 10.5061/dryad.q3b41
title: Data from: Darwin’s finches and their diet niches: the sympatric coexistence of imperfect generalists

description: Adaptive radiation can be strongly influenced by interspecific competition
 for resources, which can lead to diverse outcomes ranging from competitive
 exclusion to character displacement. In each case, sympatric species are
 expected to evolve into distinct ecological niches, such as different food
 types, yet this expectation is not always met when such species are
 examined in nature. The most common hypotheses to account for the
 coexistence of species with substantial diet overlap rest on temporal
 variation in niches (often diets). Yet spatial variation in niche overlap
 might also be important, pointing to the need for spatiotemporal analyses
 of diet and diet overlap between closely related species persisting in
 sympatry. We here perform such an analysis by characterizing the diets of,
 and diet overlap among, four sympatric Darwin's ground finch species
 at three sites and over 5 years on a single Galápagos island (Santa Cruz).
 We find that the different species have broadly similar and overlapping
 diets – they are to some extent generalists and opportunists – yet we also
 find that each species retains some ‘private’ resources for which their
 morphologies are best suited. Importantly, use of these private resources
 increased considerably, and diet overlap decreased accordingly, when the
 availability of preferred shared foods, such as arthropods, was reduced
 during drought conditions. Spatial variation in food resources was also
 important. These results together suggest that the ground finches are
 ‘imperfect generalists’ that use overlapping resources under benign
 conditions (in space or time), but then retreat to resources for which
 they are best adapted during periods of food limitation. These conditions
 likely promote local and regional coexistence.
description: DeLeon2014JEB-Feeding-Observation-DataDeLeon2014JEB-Available-Foods-Data
DOI: 10.5061/dryad.kt2g7
title: Data from: Bird-mediated seed dispersal: reduced digestive efficiency in active birds modulates the dispersal capacity of plant seeds

description: Plant populations in fragmented ecosystems rely largely on internal
 dispersal by animals. To unravel the mechanisms underlying this mode of
 dispersal, an increasing number of experimental feeding studies is carried
 out. However, while physical activity is known to affect vertebrate
 digestive processes, almost all current knowledge on mechanisms of
 internal seed dispersal has been obtained from experiments with resting
 animals. We investigated how physical activity of the mallard Anas
 platyrhynchos, probably the quantitatively most important biotic dispersal
 agent in aquatic habitats in the entire Northern Hemisphere, affects gut
 passage survival and retention time of ingested plant seeds. We fed seeds
 of nine common wetland plants to mallards trained to subsequently swim for
 six hours in a flume tank at different swimming speeds (activity levels).
 We compared gut passage survival and retention times of seeds against a
 control treatment with mallards resting in a conventional dry cage. Intact
 gut passage of seeds increased significantly with mallard activity (up to
 80% in the fastest swimming treatment compared to the control),
 identifying reduced digestive efficiency due to increased metabolic rates
 as a mechanism enhancing the dispersal potential of ingested seeds. Gut
 passage speed was modestly accelerated (13% on average) by increased
 mallard activity, an effect partly obscured by the interaction between
 seed retention time and probability of digestion. Gut passage acceleration
 will be more pronounced in digestion-resilient seed species, thereby
 modulating their dispersal distances. Our findings imply that seed
 dispersal potential by mallards calculated from previous experiments with
 resting birds is highly underestimated, while dispersal distances may be
 overestimated for some plant species. Similar effects of physical activity
 on digestive efficiency of mammals suggests that endozoochorous dispersal
 of plant seeds by vertebrates is more effective and plays a quantitatively
 more important ecological role in both terrestrial and aquatic ecosystems
 than previously thought.
description: Results flume tank
 experimentSeed retrieval data of
 feeding trials with eight individual mallards in the five experimental
 treatments. This file reports individual mallard, date of feeding trial,
 experimental treatment (0=resting, 1=floating, 2-4=swimming at increasing
 speed), swimming speed (m/s), retention time (hours after feeding), seed
 species name, number of seeds retrieved per hour and seed size (length in
 mm).flumetankdata_Datadryad.csv
DOI: 10.15468/dl.kxmnbn
title: Occurrence Download

description: A dataset containing 378 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Herbarium collection of intertidal macroalgae biodiversity along the Northwestern Iberian coast in 2020/2021"
 ]
}

 The dataset includes 378 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000668-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.evjqw9
title: Occurrence Download

description: A dataset containing 438 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The InBIO Barcoding Initiative Database: DNA barcodes of Iberian Trichoptera 01"
 ]
}

 The dataset includes 438 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000667-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ujq75y
title: Occurrence Download

description: A dataset containing 412 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The InBIO Barcoding Initiative Database: DNA barcodes of Portuguese Diptera 02 - Limoniidae, Pediciidae and Tipulidae"
 ]
}

 The dataset includes 412 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000666-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.