cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5566891
title: Dataset for: A NMR, MP2 and DFT Study of Thiophenoxyketenimines (o-ThioSchiff bases). Determination of the preferred form.

description: Five new thiophenoxyketinimines have been synthesized. 1H and 13C NMR spectra as well as deuterium isotope effects on 13C chemical shifts are determined and spectra are assigned. DFT and MP2 calculations of both structures, chemical shifts and isotope effects on chemical shifts are done. The combined analysis reveals that the compounds are primarily on a zwitter ionic form with an NH+ and a S- group and with a little of the neutral form mixed in. Very strong intramolecular hydrogen bonding is found and very high NH chemical shifts are observed. The theoretical calculations show that calculations at the MP2 level are best to obtain correct “C=S” chemical shifts.
DOI: 10.6084/m9.figshare.5566888
title: Data from: Prey-driven control of predator assemblages: zooplankton abundance drives aquatic beetle colonization

description: Data (csv) and associated README (txt) files for the paper "Prey-driven control of predator assemblages: zooplankton abundance drives aquatic beetle colonization" by Matthew R. Pintar and WIlliam J. Resetarits, Jr. in Ecology 98 (8): 2201–2215.
DOI: 10.6084/m9.figshare.5566891.v1
title: Dataset for: A NMR, MP2 and DFT Study of Thiophenoxyketenimines (o-ThioSchiff bases). Determination of the preferred form.

description: Five new thiophenoxyketinimines have been synthesized. 1H and 13C NMR spectra as well as deuterium isotope effects on 13C chemical shifts are determined and spectra are assigned. DFT and MP2 calculations of both structures, chemical shifts and isotope effects on chemical shifts are done. The combined analysis reveals that the compounds are primarily on a zwitter ionic form with an NH+ and a S- group and with a little of the neutral form mixed in. Very strong intramolecular hydrogen bonding is found and very high NH chemical shifts are observed. The theoretical calculations show that calculations at the MP2 level are best to obtain correct “C=S” chemical shifts.
DOI: 10.7910/dvn/ni6sbj/b7tngf
title: script.R

description: :unav
DOI: 10.6084/m9.figshare.5566888.v1
title: Data from: Prey-driven control of predator assemblages: zooplankton abundance drives aquatic beetle colonization

description: Data (csv) and associated README (txt) files for the paper "Prey-driven control of predator assemblages: zooplankton abundance drives aquatic beetle colonization" by Matthew R. Pintar and WIlliam J. Resetarits, Jr. in Ecology 98 (8): 2201–2215.
DOI: 10.6084/m9.figshare.5566885
title: Dataset for: Use dependent directional bias does not transfer to the untrained limb during bimanual contractions.

description: Skills learned through practice with one limb can often be transferred to the untrained limb. In the present report, we sought to determine whether movement direction biases, acquired through repeated movement with one limb, transfer to the untrained limb. In order to do so, we asked participants to perform synchronised bilateral contractions of muscles in both wrists, followed by the unilateral contraction of muscles in one wrist. In four experiments, we manipulated the position of the unilateral target to create use-dependent directional biases ; changed the direction of the cursor in relation to the wrist movement to control for attentional biases; and sought to induce directional biases with both right and left unilateral movements. The results showed clear movement related biases for the wrist that performed unilateral contractions, but no evidence that movement-related bias transferred to the opposite limb during bilateral action. Thus motor preparation and execution of unilateral contractions does not affect the direction of movement made by the opposite limb during subsequent bilateral contractions.
DOI: 10.6084/m9.figshare.5566885.v1
title: Dataset for: Use dependent directional bias does not transfer to the untrained limb during bimanual contractions.

description: Skills learned through practice with one limb can often be transferred to the untrained limb. In the present report, we sought to determine whether movement direction biases, acquired through repeated movement with one limb, transfer to the untrained limb. In order to do so, we asked participants to perform synchronised bilateral contractions of muscles in both wrists, followed by the unilateral contraction of muscles in one wrist. In four experiments, we manipulated the position of the unilateral target to create use-dependent directional biases ; changed the direction of the cursor in relation to the wrist movement to control for attentional biases; and sought to induce directional biases with both right and left unilateral movements. The results showed clear movement related biases for the wrist that performed unilateral contractions, but no evidence that movement-related bias transferred to the opposite limb during bilateral action. Thus motor preparation and execution of unilateral contractions does not affect the direction of movement made by the opposite limb during subsequent bilateral contractions.
DOI: 10.17608/k6.auckland.5566831
title: Conceptions of Assessment: Brazil University Students

description: These pictures were analysed by Mariana Vaz Landim in her MEd thesis (University of Ouro Preto, Brazil). Dr Daniel Matos and I were her supervisors. The pictures in this thesis are a random sample of pictures collected by Dr Matos as part of his PhD dissertation, for which I was co-supervisor.<br>Related publications for these data include: Landim, M. V. (2015). <i>A avaliação sob o ponto de vista dos estudantes: O uso de desenhos para a análise de concepções de avaliação </i>(unpublished M.Ed. thesis), Universidade Federal de Ouro Preto, Ouro Preto, Brazil. <br>Landim, M. V., Matos, D. A. S., & Brown, G. T. L. (2015). A avaliação sob o ponto de vista dos estudantes: o uso de desenhos para a análise de concepções de avaliação [Assessment from the students’ point of view: the use of drawings to analyze conceptions of assessment]. <i>Psicologia, Educação e Cultura</i><i>, 19</i>(2), 55-74. <br>
DOI: 10.17608/k6.auckland.5566852
title: MTAP: Drawings of Assessment

description: These pictures are from the Measuring Teachers Assessment Practices Project. They were collected by Dr Lois Harris who was a funded post-Doctoral Research Fellow under my supervision. The pictures have been analysed and published in the following chapter:Harris, L. R., Harnett, J., & Brown, G. T. L. (2009). “Drawing” out student conceptions of assessment: Using pupils’ pictures to examine their conceptions of assessment. In D. M. McInerney, G. T. L. Brown, & G. A. D. Liem (Eds.), <i>Student Perspectives on Assessment: What Students can Tell us about Assessment for Learning </i>(pp. 53-83). Charlotte, NC: Information Age Publishing. <br>
DOI: 10.6084/m9.figshare.5566843
title: RAD-seq and tGBS SNP data for pearl millet breeding population

description: RAD-seq and tGBS genotyped data without imputation and imputation by Beagle for pearl millet breeding populationPearl_millet_cGBS.vcf: RAD-seq without imputationPearl_millet_cGBS_Beagle.vcf: RAD-seq with imputation by BeaglePearl_millet_tGBS.vcf: tGBS without imputationPearl_millet_tGBS_Beagle.vcf: tGBS with imputation by Beagle
DOI: 10.6084/m9.figshare.5566879
title: Data from: Tree leaf litter composition drives temporal variation in aquatic beetle colonization and assemblage structure in lentic systems

description: Data (csv) and associated README (txt) files for the paper "Tree leaf litter composition drives temporal variation in aquatic beetle colonization and assemblage structure in lentic systems" by Matthew R. Pintar and William J. Resetarits, Jr. in Oecologia 183 (3): 797–807.
DOI: 10.6084/m9.figshare.5566879.v1
title: Data from: Tree leaf litter composition drives temporal variation in aquatic beetle colonization and assemblage structure in lentic systems

description: Data (csv) and associated README (txt) files for the paper "Tree leaf litter composition drives temporal variation in aquatic beetle colonization and assemblage structure in lentic systems" by Matthew R. Pintar and William J. Resetarits, Jr. in Oecologia 183 (3): 797–807.
DOI: 10.17608/k6.auckland.5566852.v2
title: MTAP: Drawings of Assessment

description: These pictures are from the Measuring Teachers Assessment Practices Project. They were collected by Dr Lois Harris who was a funded post-Doctoral Research Fellow under my supervision. The pictures have been analysed and published in the following chapter:Harris, L. R., Harnett, J., & Brown, G. T. L. (2009). “Drawing” out student conceptions of assessment: Using pupils’ pictures to examine their conceptions of assessment. In D. M. McInerney, G. T. L. Brown, & G. A. D. Liem (Eds.), <i>Student Perspectives on Assessment: What Students can Tell us about Assessment for Learning </i>(pp. 53-83). Charlotte, NC: Information Age Publishing. <br>
DOI: 10.17608/k6.auckland.5566831.v1
title: Conceptions of Assessment: Brazil University Students

description: These pictures were analysed by Mariana Vaz Landim in her MEd thesis (University of Ouro Preto, Brazil). Dr Daniel Matos and I were her supervisors. The pictures in this thesis are a random sample of pictures collected by Dr Matos as part of his PhD dissertation, for which I was co-supervisor.<br>Related publications for these data include: Landim, M. V. (2015). <i>A avaliação sob o ponto de vista dos estudantes: O uso de desenhos para a análise de concepções de avaliação </i>(unpublished M.Ed. thesis), Universidade Federal de Ouro Preto, Ouro Preto, Brazil. <br>Landim, M. V., Matos, D. A. S., & Brown, G. T. L. (2015). A avaliação sob o ponto de vista dos estudantes: o uso de desenhos para a análise de concepções de avaliação [Assessment from the students’ point of view: the use of drawings to analyze conceptions of assessment]. <i>Psicologia, Educação e Cultura</i><i>, 19</i>(2), 55-74. <br>
DOI: 10.17608/k6.auckland.5566852.v1
title: MTAP: Drawings of Assessment

description: These pictures are from the Measuring Teachers Assessment Practices Project. They were collected by Dr Lois Harris who was a funded post-Doctoral Research Fellow under my supervision. The pictures have been analysed and published in the following chapter:Harris, L. R., Harnett, J., & Brown, G. T. L. (2009). “Drawing” out student conceptions of assessment: Using pupils’ pictures to examine their conceptions of assessment. In D. M. McInerney, G. T. L. Brown, & G. A. D. Liem (Eds.), <i>Student Perspectives on Assessment: What Students can Tell us about Assessment for Learning </i>(pp. 53-83). Charlotte, NC: Information Age Publishing. <br>
DOI: 10.25373/ctsnet.5566726
title: Thoracoscopic Right Apicoposterior Segmentectomy

description: S2 and S1+2 segmentectomies are frequently indicated, as the location of a tumor or a nodule in S2 or at the border between S2 and S1 is not unusual. Preserving S3 rather than performing an upper lobectomy has two advantages: it spares respiratory function, and S3 is a large segment that occupies the pleural cavity and prevents reexpansion issues that can be encountered after an upper lobectomy, as illustrated in Video 1 and Figure 1.<br>The technique the authors describe is based on a thoracoscopic fissure-first approach whose rational and basics have been reported (1, 2). This technical description is based on an experience of 63 right S1+2segmentectomies out of a series of 375 thoracoscopic segmentectomies that have been performed at the authors' institution. Knowledge of anatomical landmarks and anatomical variations is a prerequisite to feeling secure during these procedures (3).<br>Learn more at: https://www.ctsnet.org/article/thoracoscopic-right-apicoposterior-segmentectomy
DOI: 10.6084/m9.figshare.5566732
title: Pests in the collection: What’s normal?

description: In putting together an updated IPM strategy for the Frost Entomological Museum we wondered how our practices and environmental conditions compared to other entomological collections. The most recent surveys we found were published by Edwards, Bell, and King (1980) and Linnie (1994). Clearly a lot(!) has changed in the last 23 years, as we now use fewer chemicals in our IPM and have more knowledge generally about best practices. We hope this survey, the results of which will be presented at ECN in Denver (November 2017), will inform our strategy going forward. We also hope the accumulated numbers, facts, figures, and recommendations (i.e., DATA) will help us and others argue for more infrastructure investment. This survey was approved by Penn State's IRB ( https://www.research.psu.edu/irb - study ID STUDY00008081)
DOI: 10.6084/m9.figshare.5566723
title: The effects of familiarity and reproductive status on olfactory discrimination by female Cape ground squirrels data set

description: Data sets corresponding to Figures 1 to 4 in manuscript. All procedures for collection of data were approved by the University of Manitoba's Animal Care and Use Committee (#F14-032).<br>
DOI: 10.6084/m9.figshare.5566723.v1
title: The effects of familiarity and reproductive status on olfactory discrimination by female Cape ground squirrels data set

description: Data sets corresponding to Figures 1 to 4 in manuscript. All procedures for collection of data were approved by the University of Manitoba's Animal Care and Use Committee (#F14-032).<br>
DOI: 10.6084/m9.figshare.5566699.v1
title: Aletheia Poster Force2017

description: Aletheia is a decentralized and distributed database that enables users to publish and access research for free.
DOI: 10.6084/m9.figshare.5564527
title: Rmela_PE_060515_kmer31_5k.fasta

description: Draft genome assembly from an axenic culture of <em>Rhizoplaca melanophthalma</em> (‘mela_REF’) with contigs &gt;5 kilobases (Kb)
DOI: 10.6084/m9.figshare.5566609
title: Earth Analytics R Homework | Landsat pre-fire cloud free data collection

description: This repository contains Landsat data files used for the homework for the Cold Springs fire remote sensing assignments in the Earth Analytics R course taught by the Earth Analytics Education Initiative at CU Boulder. This data are the pre-fire cloud fire Landsat scene covering the Cold Springs fire near Nederland, CO in July 2016. <br><br><br>
DOI: 10.6084/m9.figshare.5564527.v1
title: Rmela_PE_060515_kmer31_5k.fasta

description: Draft genome assembly from an axenic culture of <em>Rhizoplaca melanophthalma</em> (‘mela_REF’) with contigs &gt;5 kilobases (Kb)
DOI: 10.6084/m9.figshare.5566732.v3
title: Pests in the collection: What’s normal?

description: In putting together an updated IPM strategy for the Frost Entomological Museum we wondered how our practices and environmental conditions compared to other entomological collections. The most recent surveys we found were published by Edwards, Bell, and King (1980) and Linnie (1994). Clearly a lot(!) has changed in the last 23 years, as we now use fewer chemicals in our IPM and have more knowledge generally about best practices. We hope this survey, the results of which will be presented at ECN in Denver (November 2017), will inform our strategy going forward. We also hope the accumulated numbers, facts, figures, and recommendations (i.e., DATA) will help us and others argue for more infrastructure investment. This survey was approved by Penn State's IRB ( https://www.research.psu.edu/irb - study ID STUDY00008081)
DOI: 10.6084/m9.figshare.5566609.v1
title: Earth Analytics R Homework | Landsat pre-fire cloud free data collection

description: This repository contains Landsat data files used for the homework for the Cold Springs fire remote sensing assignments in the Earth Analytics R course taught by the Earth Analytics Education Initiative at CU Boulder. This data are the pre-fire cloud fire Landsat scene covering the Cold Springs fire near Nederland, CO in July 2016. <br><br><br>
DOI: 10.6084/m9.figshare.5563246
title: H2MM analysis of control smFRET data

description: H2MM analysis of simulated diffusion-based smFRET data:<br>1. .csv files - input files for the analysis includea. burst data filesb. timestamps - files that include all photon ID and photon timestamps of all photons in each selected burstc. BG - table of BG rates of different photon streams in the simulations per each 2s of the measurement.<br>2. Matlab files - include all the H2MM analysis variables, as is explained in https://doi.org/10.6084/m9.figshare.5401561<br>These files include:<br>1. (-8)TA-(+4)NTD in TE50 buffer2. (-15)TA-(+2)NTD in TE50 buffer3. Mixture of 1 & 2.4. Eyal Nir's Hairpin 3 (shows millisecond 2-state dynamics) in TE300 buffer (in these conditions the fraction of the 2 populations is roughly 50%.5. (-15)TA-(+2)NTD in TE300 buffer.6. Mixture of 4 & 5.
DOI: 10.6084/m9.figshare.5563240
title: A python notebook summarizing the analysis of usALEX-smFRET for the formation of figure S10 - smFRET and BVA on simulated diffusion-based smFRET data

description: The following Python notebook summarizes the analysis performed by the FRETBursts software to form figure S10
DOI: 10.6084/m9.figshare.5563132
title: Strong responses of <i>Drosophila melanogaster</i> microbiota to developmental temperature

description: Physiological responses to changes in environmental conditions such as temperature may partly arise from the resident microbial community that integrates a wide range of bio-physiological aspects of the host. In the present study, we assessed the effect of developmental temperature on the thermal tolerance and microbial community of <i>Drosophila melanogaster</i>. We also developed a bacterial transplantation protocol in order to examine the possibility of reshaping the host bacterial composition and assessed its influence on the thermotolerance phenotype. We found that the temperature during development affected thermal tolerance and the microbial composition of male <i>D. melanogaster</i>. Flies that developed at low temperature (13°C) were the most cold resistant and showed the highest abundance of <i>Wolbachia</i>, while flies that developed at high temperature (31°C) were the most heat tolerant and had the highest abundance of <i>Acetobacter</i>. In addition, feeding newly eclosed flies with bacterial suspensions from intestines of flies developed at low temperatures changed the heat tolerance of recipient flies. However, we were not able to link this directly to a change in the host bacterial composition.
DOI: 10.6084/m9.figshare.5563207
title: Weight of evidence analysis for assessing the genotoxic potential of carbon nanotubes

description: Carbon nanotube (CNT) is a nanomaterial that has received interest because of its high-tensile strength and low weight. Although CNTs differ substantially in physico-chemical properties, they share high aspect ratio which resembles that of asbestos and other fibers causing lung cancer and mesothelioma. One type of multi-walled CNTs (i.e. MWCNT-7) has been classified as possibly carcinogenic to humans by IARC (Group 2B) based on experimental animal data, whereas other types of MWCNTs and single-walled CNTs (SWCNT) could not be classified due to lack of data from epidemiologic studies and insufficient mechanistic evidence. Damage to DNA is considered to be a key mechanistic step in the development of fiber-induced cancer. Thus, the genotoxic potential can be a cornerstone in the evaluation of hazards of CNTs. The present study used a weight of evidence (WoE) analysis to evaluate the genotoxicity of different types of CNTs. Genotoxicity endpoints close to cancer (mutations and chromosome aberrations) and animal models had highest weight in the WoE analysis. Eight CNT materials out of 130, which had been assessed in several studies, were evaluated in the WoE analysis. The results demonstrated that MWCNT-7 has strongest WoE for a genotoxic hazard among the MWCNTs. Two types of SWCNTs have a similar WoE for genotoxicity as MWCNT-7. Several reference materials from the Joint Research Centre have less WoE for genotoxicity. The WoE analysis demonstrates a difference in genotoxicity for CNTs, but further research is required to unravel the physico-chemical characteristics that govern the differences in genotoxic hazard.
DOI: 10.6084/m9.figshare.5563207.v1
title: Weight of evidence analysis for assessing the genotoxic potential of carbon nanotubes

description: Carbon nanotube (CNT) is a nanomaterial that has received interest because of its high-tensile strength and low weight. Although CNTs differ substantially in physico-chemical properties, they share high aspect ratio which resembles that of asbestos and other fibers causing lung cancer and mesothelioma. One type of multi-walled CNTs (i.e. MWCNT-7) has been classified as possibly carcinogenic to humans by IARC (Group 2B) based on experimental animal data, whereas other types of MWCNTs and single-walled CNTs (SWCNT) could not be classified due to lack of data from epidemiologic studies and insufficient mechanistic evidence. Damage to DNA is considered to be a key mechanistic step in the development of fiber-induced cancer. Thus, the genotoxic potential can be a cornerstone in the evaluation of hazards of CNTs. The present study used a weight of evidence (WoE) analysis to evaluate the genotoxicity of different types of CNTs. Genotoxicity endpoints close to cancer (mutations and chromosome aberrations) and animal models had highest weight in the WoE analysis. Eight CNT materials out of 130, which had been assessed in several studies, were evaluated in the WoE analysis. The results demonstrated that MWCNT-7 has strongest WoE for a genotoxic hazard among the MWCNTs. Two types of SWCNTs have a similar WoE for genotoxicity as MWCNT-7. Several reference materials from the Joint Research Centre have less WoE for genotoxicity. The WoE analysis demonstrates a difference in genotoxicity for CNTs, but further research is required to unravel the physico-chemical characteristics that govern the differences in genotoxic hazard.
DOI: 10.6084/m9.figshare.5563132.v1
title: <b>Strong responses of <i>Drosophila melanogaster</i> microbiota to developmental temperature</b>

description: Physiological responses to changes in environmental conditions such as temperature may partly arise from the resident microbial community that integrates a wide range of bio-physiological aspects of the host. In the present study, we assessed the effect of developmental temperature on the thermal tolerance and microbial community of <i>Drosophila melanogaster</i>. We also developed a bacterial transplantation protocol in order to examine the possibility of reshaping the host bacterial composition and assessed its influence on the thermotolerance phenotype. We found that the temperature during development affected thermal tolerance and the microbial composition of male <i>D. melanogaster</i>. Flies that developed at low temperature (13°C) were the most cold resistant and showed the highest abundance of <i>Wolbachia</i>, while flies that developed at high temperature (31°C) were the most heat tolerant and had the highest abundance of <i>Acetobacter</i>. In addition, feeding newly eclosed flies with bacterial suspensions from intestines of flies developed at low temperatures changed the heat tolerance of recipient flies. However, we were not able to link this directly to a change in the host bacterial composition.