cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/4g3qah
title: CONSOLE_WP3_Task3.1_ Analysis of secondary data_FR_2022.10.22

description: With this database, we examine the impact of taking feeding into account in the calculation of enteric methane emissions of a panel of French dairy farms and estimate the extra-costs of adding more grasslands in fodder systems. A balanced panel of 735 dairy farms from the farm accountancy data network (FADN) for the years 2016 to 2018 was selected (otexe 45), downloaded online from Agreste. This database is representative for socio-economic and accountancy information of French medium and large farms and is relevant for assessing the financial needs of dairy farms to join a national programme such as Eco-Methane. We compare an indicator constructed using the Eco-Methane methodology with an indicator that only takes into account productivity. The values of the Eco-Methane indicator were collected from the association Bleu-Blanc-Coeur, and allocated to FADN observations based on their location and share of maize in the fodder area. The enteric methane emissions indicator which only accounts for productivity was calculated with FADN variables based on the Tier 2 methodology implemented in the annual French GHG inventories conducted by the Citepa. We use FADN data on production quantities, the factors of production, fodder crop rotation systems and fuel and feed expenses to estimate a variable cost function of milk production to assess marginal costs and evaluate the extra-cost associated with adding more grass in fodder crop rotation systems.
DOI: 10.57745/1cm5gw
title: High-frequency measurement of Total Phosphorus and Total Reactive Phosphorus in the Kervidy-Naizin catchment (2016-2023)

description: This dataset contains high-frequency measurements of Total Phosphorus (TP) and Total Reactive Phosphorus (TRP) in the Kervidy-Naizin catchment https://agrhys.rennes.hub.inrae.fr/. Kervidy-Naizin is part of the environmental research observatory Aghrys, where several environmental compartments – hydrosphere, pedosphere, biosphere – and farming practices have been monitored since 1990 (Fovet et al., 2018). Here, we describe the high frequency data measured by the bankside analyser Hach-Lange Sigmatax-Phosphax from April 2016 to September 2013, and present a comparison with laboratory analysis of grab samples collected at the same site.
DOI: 10.57745/2zvjvc
title: Sequences of Cytochrome P450 from Ixodes ricinus

description: The project contains a fasta file of curated Cytochrome P450 proteins (CYP), from the genome of Ixodes ricinus found in the European Nucleotide Archive with the number PRJEB67792. it also contains a fasta file of Cytochrome P450 genomic sequences and a file with CYP genes position on the genome
DOI: 10.57745/30abby
title: Molecular dynamics data for DNA base flipping

description: DNA base flipping trajectory files. Initial state is a double stranded DNA containing a thymine mutated to a uracil. Uracil is then flipped out according to a 100ns simulation. The DNA structure was created with the w3DNA tool, with a uracil replacing thymine in position 12. The structure was solvated with tip3p water model and 0.15 mol sodium and chloride added to neutralize the system. Minimization, equilibration and production were performed on the system to obtain a stable configuration. Then a metadynamic simulation was run for uracil base flipping using the NAMD tool, with charmm36 force field. The 'input' folder contains the input files to run the simulation. The 'output' folder contains the trajectory.
DOI: 10.57745/3ijnyr
title: High resolution spectra of the Silicon at 5665 Å and 5684 Å in the Sun

description: We present a dataset of high resolution spectra of the Sun of the SiI lines at 5665.563 Å and 5684.5 Å. These solar spectra (resolution respectively of 11.153 mÅ and 10.995 mÅ) were obtained in the quiet Sun at various distances from the disk centre with the ground based CNRS Themis telescope and are useful for the research of Silicon abundance. The spectra shown here are freely available in FITS format to the research community. See also https://doi.org/10.57745/9HRBAG for the centre to limb variation of OI forbidden lines at 6300 Å and 6364 Å, and https://doi.org/10.57745/U1MQZB for the centre to limb variation of the OI triplet at 7774 Å.
DOI: 10.57745/456jf7
title: French Open Science Monitor - publications dataset

description: This dataset contains the publication data underlying the French Open Science Monitor. The website https://frenchopensciencemonitor.esr.gouv.fr provides an overview of the results of the French Open Science Monitor. This dataset lists scientific publications with a French affiliation and a Crossref DOI or a HAL identifier for publications without a DOI. Doctoral theses are also indexed. Each dataset provides its metadata, information about its Open Access status (via the Unpaywall service), its disciplinary field, and information about the detection of mentions of datasets and software in the full text, as well as a large amount of open metadata.
DOI: 10.57745/58x9gt
title: Amaizing Dent Panel used for breeding program simulation

description: This dataset corresponds to the data associated with the study: “Improving the use of plant genetic resources to sustain breeding programs efficiency” by Sanchez et al. (submitted). The data include the genotyping of 338 public lines from the Dent Amaizing Panel with the 50K SNP Illumina Infinium HD array (Ganal et al., 2011) and the result of an ADMIXTURE analysis (k=3) performed by (Rio et al., 2019). The following QC filters were applied: line call rate ≥ 0.8, marker call rate ≥ 0.9, line heterozygosity rate ≤ 0.1 and marker heterozygosity rate ≤ 0.15. Beagle V4 was used to impute missing data. 1. M. W. Ganal, et al., A Large Maize (Zea mays L.) SNP Genotyping Array: Development and Germplasm Genotyping, and Genetic Mapping to Compare with the B73 Reference Genome. PLoS ONE 6, e28334 (2011). 2. S. Rio, T. Mary-Huard, L. Moreau, A. Charcosset, Genomic selection efficiency and a priori estimation of accuracy in a structured dent maize panel. Theor Appl Genet 132, 81–96 (2019).
DOI: 10.57745/49oola
title: Orthophoto - Glénan - Ilot de la Tombe

description: Orthophotographie aérienne à très haute résolution spatiale (3 cm) de l'îlot de la Tombe, archipel de Glénan, Finistère, France. Acquisition 07/04/2025. Collaboration Réserve Naturelle de Glénan Projection Lambert 93 (EPSG 2154).
DOI: 10.57745/4mxavf
title: Evaluation du stock de P. elongatus en Guinée / Guinée-Bissau par des modèles de production et des méthodes basées sur les fréquences de tailles

description: Le présent document s'inscrit dans le cadre du WP1 du projet DEMERSTEM et vise à effectuer une évaluation du stock de Pseudotolithus elongatus en Guinée et Guinée Bissau en utilisant les modèles de production de biomasse et des méthodes basées sur des fréquences de tailles. Il s’agit ainsi de réaliser un diagnostic, fournir une aide à la gestion en calculant des indicateurs, et renseigner sur l’état de cette ressource halieutique. Cette analyse est réalisée selon une hypothèse de pseudo-équilibre à l’aide du package demerstem, puis dans un cadre dynamique bayésien via le package JABBA (Winker et al, 2018) et enfin, via la méthode LBB (Froese et al, 2018)
DOI: 10.57745/4uyiys
title: Contributors of HAL Repository

description: The data have been produced as part of the HAL/LO research project on the contributors of the HAL repository. (1) Background: The 2002 Budapest Open Access Initiative recommended on self-archiving of scientific articles in open repositories as the “green road” to open access. Twenty years later, only one part of the researchers deposits their publications in open repositories; moreover, one part of the repositories’ content is not based on self-archived deposits but on mediated nonfaculty contributions. The purpose of the research is to provide more empirical evidence on this situation and to assess the impact on the future of the green road. (2) Methods: We analyzed the contributions on the French national HAL repository from more than 1,000 laboratories affiliated to the ten most important French research universities, with a focus on 2020, representing 14,023 contributor accounts and 166,939 deposits. (3) Results: We identified seven different types of contributor accounts, including deposits from nonfaculty staff and import flows from other platforms. Mediated nonfaculty contribution accounts for at least 48% of the deposits. We also identified difference between institutions and disciplines. (4) Conclusions: Our empirical results reveal a transformation of open repositories from self-archiving and direct scientific communication towards research information management. Repositories like HAL are somewhere in the middle of the process.
DOI: 10.57745/50yqvi
title: Meloidogyne javanica genome assembly

description: We first used guppy-v6.0.6 in super high-accuracy mode with a minimal quality score of 7 (--min_qscore 7) to base-call reads from the raw sequencing signal. Following QC, we used nanofilt (De Coster et al., 2018) to crop the 50 first and the 30 last nucleotides as these regions showed reduced per-base quality. We then selected reads that were at least 2kb long and had a quality score Q &gt; 12. This returned 11,506,089 cleaned reads for M. javanica. We assembled the genomes from ONT cleaned data using NECAT (Chen et al., 2021) with default parameters and an input genome size of 300Mb. We obtained 365 contigs with an assembly size of 298,215,187 bp and a N50 of 2,079,353. After the removal of the mitochondrial genome, we had a final assembly with 364 contigs
DOI: 10.57745/3k4byx
title: Apple scab assessments on a differential host range of Malus in a Loire Valley Orchard

description: Ce jeu de données présente les observations réalisées dans le cadre du projet Vinquest de monitoring des races de tavelure du pommiers. Ce verger comprend 17 génotypes de la gamme d’hôtes différentielle décrite par Bus et al en 2011. Les évaluations du niveau de maladie sur feuilles ont été réalisées en fin de saison de contaminations primaires sur arbre entier , selon une échelle sévérité de 1 à 9 (Lateur and al 1994). Pour les détails sur le plan et de traitements voir les documents en description.
DOI: 10.57745/3kwmmy
title: Projections hydrologiques souterraines sur le territoire nord-aquitain

description: Le MOdèle Nord-Aquitain (MONA) simule l’évolution des niveaux de nappe à l’échelle des aquifères du territoire Nord-Aquitain. C’est un modèle spatialisé à une résolution de 2 km et discrétisé sur la verticale en 15 couches représentant les principaux aquifères de ce système multicouche. Ce modèle simule l’évolution des nappes profondes sous couverture, dites captives, au pas de temps annuel. Les indicateurs utilisés pour évaluer l’impact du changement climatique sur l’évolution de ces nappes se basent sur les niveaux piézométriques annuels calculés par le MONA. Les impacts sont déterminés en agrégeant ces indicateurs sur des périodes de 30 ans et en comparant trois horizons temporels futurs (2021-2050, 2041-2070 et 2070-2099) à une période de référence (1976-2005).
DOI: 10.57745/3r3xwh
title: P. notialis stock assessment in Senegal - Mauritanie by length frequencies analysis - Rectified pseudo-cohort analysis LBB -

description: This work, included within WP1 - DEMERSTEM, aims to establish the state of exploitation of the main stocks of coastal shrimp (Penaeus notialis) exploited in West Africa, from Mauritania to Guinea. This species is exploited both by artisanal fishing in the mouth areas and the various estuaries (Saint-Louis, Sine Saloum, Gambia, Casamance, Bijagos Islands) and industrial fishing at sea. Along the western continental shelf In Africa, three areas of importance for coastal shrimp fishing are distinguished, namely the Nouadhibou area (North Mauritania), the Saint-Louis area (South Mauritania and North Senegal) and Senegal southern area (Senegal, Gambia and Guinea Bissau).
DOI: 10.57745/3w8ccv
title: Benchmark of proteins bound to single-stranded DNA

description: We explored the Protein Data Bank (PDB) to collect protein–ssDNA structures and create a multi‐conformational docking benchmark including both bound and unbound protein structures. Due to ssDNA high flexibility when not bound, no ssDNA unbound structure is included in the benchmark. This benchmark is, to our knowledge, the first one made to peruse available structures of ssDNA–protein interactions to such an extent, aiming to improve computational docking tools dedicated to this kind of molecular interactions.
DOI: 10.57745/4di5k9
title: IPMWorks H2020 No. 101000339 - IPM Biofortification Strategy 2021-2022 yield

description: IPMWorks H2020 No. 101000339 – IPM Biofortification Strategy 2021-2022 yield raw data contains all yield data points (kg/ha) and conversions to t/ha. The data contains information on the respective location as coordinates (Longitude and Latitude), the width of the harvest (m) and whether the yield measurement was included in the agronomics data analysis (TRUE/FALSE).
DOI: 10.57745/4kqwzl
title: RPG complété 2019 département 2A

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 2A. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.57745/4kufqn
title: CS-Swiss CH

description: The LCI and results of AD of biofruits and Vinegar at Cogiterre
DOI: 10.57745/4xc0sh
title: Dataset_soils_PSDR_Dynamiques

description: Physico-chemical and biological characterization of set of 20 soils sampling in the Plateau de Saclay territory.
DOI: 10.57745/5jdnwf
title: Simulated hydrological variables and flow intermittence indicators for the projection period (1985-2100) for the 6 European catchments studied in the DRYvER project

description: Hydrological models outputs for the projection period (1985-2100) for the 6 European catchments studied in the DRYvER project.
DOI: 10.57745/5ktbhl
title: Points du réseau de référence hydrologique

description: Support SIG (.shp) des points du réseau de référence hydrologique
DOI: 10.57745/5nxfnr
title: Adults behavioral data for domain-general syntax

description: This repository contains behavioral data from a psycho-cognitive experiment which aimed to evaluate in adults the learning transfer from the motor domain in favor to the language domain. The protocol was divided into three parts: (1) a linguistic syntax pre-test, (2) a motor training and (3) a linguistic syntax post-test. Each subject completed the same parts 1 and 3 (with different random trials), while they were assigned to four different experimental groups for part 2. The motor training groups were: Simple Hand (SH), Complex Hand (CH), Simple Tool (ST) and Complex Tool (CT). The language trials consisted of a sentence encoding followed by an affirmation test. Each trial gave accuracy and reaction time. This language test evaluated the syntactic performance of participants with a variation of syntactic complexity: coordinated sentences (CC), subject relative clauses (SRC) and object relative clauses (ORC). The motor trials consisted of moving pegs on a pegboard according to instructions. Each trial gave accuracy and reaction time. This motor training evaluated the effect of the effector (Hand vs Tool) and the complexity of the action sequence (Simple vs Complex).
DOI: 10.57745/2uzt8k
title: Récapitulatif_pêches_Nivelle

description: Petit fleuve côtier de 39 km de long, la Nivelle est une rivière à saumon et à truite et ses populations sont suivies depuis le début des années 80. Afin d’estimer l’état des populations, chaque année, des suivis sont effectués sur le cours principal de la rivière et ses principaux affluents. Parmi ces suivis importants figurent les pêches d'abondance truite et saumon en septembre qui permettent de pouvoir estimer la production de juvéniles sur l'année en cours. Plus récemment des pêches de type De Lury viennent compléter ces inventaires sur la Nivelle. Ce dataset est une synthèse des captures sur les différents secteurs couverts par les pêches. Les individus sont classés par âge : 0+, 1+ et 2+ pour les saumons et 0+ et plus pour les truites. Quant aux anguilles, il s'agit d'un dénombrement des effectifs avec des données de longueur et de poids.
DOI: 10.57745/40stpr
title: Phased assemblies of the Charolais breed bovine genome

description: These datasets include the phased assemblies of the Charolais breed bovine genome that were performed using both the Parent-HiFi and the Hi-C-HiFi methods. The Research Institute for Agriculture, Food and Environment INRAE, with the support of a consortium of private companies and Occitanie region, carried out the SeqOccIn research program.
DOI: 10.57745/4tfqtp
title: A dataset on sensory perception related to the moment of the day

description: This dataset was collected to pretest a method for measuring the perception of the same food at different times of the day in relation to individuals' circadian rhythms.
DOI: 10.57745/56palb
title: Image analysis scripts for segmenting and quantifying mitochondria in pollen grains

description: This dataset contains pipeline scripts for segmenting pollen grains and their mitochondria from 3D confocal microscopy images. The scripts are to be used as arguments of the pipeline operator in the BIP software (https://free-d.versailles.inrae.fr/html/bip.html).
DOI: 10.57745/5ecvdj
title: How copper based grape pest management has impacted wine aroma

description: Experimental data of a scientific paper describing the total production of H2S during alcoholic fermentation as a function of the ecological group of Saccharomyces cerevisiae, the number of copies of CUP1
DOI: 10.57745/5sxzqh
title: Localization and analysis of telomeres in M. incognita chromosomes via FISH

description: Fluorescent in situ hybridization (FISH) performed on isolated females from infected tomato roots using probe specific to composite telomeric repeats (green) and chromosomes counterstained with DAPI (shown in blue or black and white). A) Localization of telomere repeats on interphase nuclei (a-c) showing the high specificity of FISH staining together with very low background. B) Additional images (a-f) of telomeric chromosomal localization of the Minc composite repeat on metaphases shown on many different chromosomes. DAPI is separately also shown in black and white for better chromosomal end visualization. White arrows represent chromosomes with no visible telomere signal at the end. C) Quantification of chromosome (a) and telomere (b) number manually performed on Figure 4 from main manuscript text showing most of chromosomes have telomere located only at one single end. D) Telomere localization of Minc repeat shown together with enlarged chromosomes and accompanying FISH signals that occupy weaker stained end of chromosomes (regions marked with red arrows). E) Quantification of telomere FISH signals on interphase and prophase nuclei (a-e) showing consistent number of observed telomeres. Spot analysis was done on telomere (green) channel with automatic determination of threshold and spots were counted based on their mutual separation. Panels are shown with merged channels, DAPI shown in black and white, FISH signals and ImageJ quantification respectively. The total number of telomere signals is given in the top right box on last panel for each analyzed nucleus.
DOI: 10.57745/48tovq
title: Documentation for "Rotary kilns and drums"

description: Documentation of the "Rotary Kilns and Drums" (RKD) data collection
DOI: 10.25549/pcra-ouc11033063
title: Redemption tidings, vol. 13, nos. 1-26, 1 Jan. - 17 Dec. 1937

description: [description english/roman)] Issued fortnightly (every two weeks). "A full gospel magazine for all believers" -- subtitle. Includes Tidings from our missionaries in each issue (1 Jan. - 17 Dec. 1937).
DOI: 10.15468/dl.kzn4kh
title: Occurrence Download

description: A dataset containing 1451 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (France, Spain, Andorra)",
 "OccurrenceStatus is Present",
 "TaxonKey is Vitis riparia Michx."
 ]
}

 The dataset includes 1451 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0202852-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hwksz8
title: Occurrence Download

description: A dataset containing 22139 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phyllopertha horticola (Linnaeus, 1758), Pogonocherus hispidulus (Piller & Mitterpacher, 1783), Prosternon tessellatum (Linnaeus, 1758))",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 22139 records from 430 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0156292-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-44072
title: Redemption tidings, vol. 13, nos. 1-26, 1 Jan. - 17 Dec. 1937

description: [description english/roman)] Issued fortnightly (every two weeks). "A full gospel magazine for all believers" -- subtitle. Includes Tidings from our missionaries in each issue (1 Jan. - 17 Dec. 1937).
DOI: 10.15468/dl.4kf55y
title: Occurrence Download

description: A dataset containing 64433 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ovis aries Linnaeus, 1758, Oxalis corniculata L., Oxalis strictula Steud.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 64433 records from 354 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0323442-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.