cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/5965s-gjv50
title: archaeon

description: ultrastructure in archaeon, found dark matter
description: <strong>Tilt Series Date:</strong> 2007-07-31</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> Nitrosopumilus maritimus</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-70.0°, 70.0°), step: 2°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: 8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2007-07-31-11/rawdata/</p>Archia07-731_sam4_sq04_h03_41k.st,  Tilt Series (Pixel Size 0.54 nm), 604.1 MB  
        
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        Archia07-731_sam4_sq04_h03_41k_full.rec,  Reconstruction (Pixel Size 1.08 nm), 3.3 GB  
        
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        Archia07-731_sam4_sq04_h03_41k_rec_trim_bin2_cut_bnad25.mrc,  surface view of the dark matter, 49.1 MB  
        
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        Archia07-731_sam4_sq04_h03_41k_rec_trim_bin2_cut_bnad25_cut.mrc,  1.7 MB  
        
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        sam4sq04h03_bin2band25_view1.png,  388.0 kB  
        
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DOI: 10.22002/6pe89-knc10
title: Hn under limiting CO2 for 1 hr

description: H. neapolitanus cell h3 under limiting CO2 for 1 hourKeywords: carboxysomes, internal granules, partial carboxysomes
description: <strong>Tilt Series Date:</strong> 2007-09-21</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Halothiobacillus neapolitanus</p>
<strong>Strain:</strong> c2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth under limiting CO2 for 1 hour</p>
description: Files available via S3 at ://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-21-8/rawdata/</p>Hn1h_h3_180e12um18K_21sept07.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.0 GB  
        
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        Hn1h_h3_180e12um18K_21sept07_bin1.rec,  Reconstruction (Pixel Size 0.0 nm), 439.7 MB  
        
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        Hn1h_h3_180e12um18K_21sept07_bin2_s84_cbxy1_darkdens.tif,  1.0 MB  
        
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        Hn1h_h3_180e12um18K_21sept07_bin2_s88_cbxypartial.tif,  1.0 MB  
        
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        Hn1h_h3_180e12um18K_21sept07_bin2_5ave_rec.mov,  file associated to 3D Image #4136, 13.3 MB  
        
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DOI: 10.22002/xt6tv-2re38
title: in vitro assembled CA-NC cone

description: data collected by Leginon with large defocus (15 um)
description: <strong>Tilt Series Date:</strong> 2008-07-01</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> in vitro assembled HIV CA-NC cones</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-70.0°, 70.0°), step: 2°, constant angular increment, dosage: 80.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2008-07-01-1/rawdata/</p>08jul01a_leginon07.mrc,  Tilt Series (Pixel Size 0.52 nm), 587.2 MB  
        
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        08jul01a_leginon07bin2_full.rec,  Reconstruction (Pixel Size 1.04 nm) bin 2, 478.2 MB  
        
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        08jul01a_leginon07bin2_rec_cut1_bnad.mrc,  isosurface of cone 1, 1.5 MB  
        
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        08jul01a_leginon07bin2_rec_cut2_bnad.mrc,  1.1 MB  
        
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        cone08jul01a_leginon07bin2_rec_cut1_bnad_0050_isosurface1.png,  217.3 kB  
        
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DOI: 10.22002/2d4za-rjn91
title: FzlA o/e

description: Raw data files of FzlA o/e
description: <strong>Tilt Series Date:</strong> 2008-12-01</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR</p>
  FzlAoebx50712020834K200e003.jpg: Low mag
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-12-01-4/rawdata/</p>FzlAoebx50712010834K200e003.mrc,  Tilt Series (Pixel Size 0.644 nm), 1.1 GB  
        
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        FzlAoebx50712010834K200e0031k.rec,  Reconstruction (Pixel Size 1.288 nm), 382.3 MB  
        
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        FzlAoebx50712010834K200e0031k_full.rec,  Reconstruction (Pixel Size 1.288 nm), 1.0 GB  
        
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        dbFzlAoebx50712010834K200e0031k.rec.mrc,  Reconstruction (Pixel Size 1.288 nm), 382.3 MB  
        
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        FzlAoebx50712020834K200e003.tif,  Low mag, 8.4 MB  
        
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DOI: 10.22002/wxs48-9z435
title: archaeon

description: ultrastructure, dark matter
description: <strong>Tilt Series Date:</strong> 2007-08-02</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> Nitrosopumilus maritimus</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-70.0°, 70.0°), step: 2°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: 8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2007-08-02-1/rawdata/</p>Archia07-802_sam1_sq04_h01_41k.st,  Tilt Series (Pixel Size 0.54 nm), 604.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2007-08-02-1/rawdata/Archia07-802_sam1_sq04_h01_41k.st"
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        Archia07-802_sam1_sq04_h01_41k_full.rec,  Reconstruction (Pixel Size 1.08 nm), 2.4 GB  
        
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        Archia07-802_sam1_sq04_h01_41k_rec_trim_bin2_cut_bnad25.mrc,  surface view of dark matter, 63.2 MB  
        
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        Archia07-802_sam1_sq04_h01_41k_rec_trim_bin2_cut_bnad25_cut.mrc,  868.7 kB  
        
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        sam1sq04h01_bin2band25_view1.png,  573.6 kB  
        
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DOI: 10.22002/yw6ve-w2v21
title: Hn in 5% CO2

description: H. neapolitanus cell h1 in 5% CO2
description: <strong>Tilt Series Date:</strong> 2007-09-20</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Halothiobacillus neapolitanus</p>
<strong>Strain:</strong> c2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 170.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth in 5% CO2</p>
description: Files available via S3 at ://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-20-8/rawdata/</p>Hn0h_h1_170e12um18K_20sept07.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.0 GB  
        
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        Hn0h_h1_170e12um18K_20sept07_bin1.rec,  Reconstruction (Pixel Size 0.0 nm), 719.9 MB  
        
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        Hn0h_h1_170e12um18K_20sept07_s69_cbxy1_darkdens.tif,  1.5 MB  
        
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        Hn0h_h1_170e12um18K_20sept07_s58_cbxypartial.tif,  1.5 MB  
        
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        Hn0h_h1_170e12um18K_20sept07_bin2_ave5_rec.mov,  file associated to 3D Image #4252, 23.4 MB  
        
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DOI: 10.22002/vwz4y-r4e02
title: nucleosome arrays

description: Raw data files of nucleosome arrays
description: <strong>Tilt Series Date:</strong> 2006-06-29</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> nucleosome arrays</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-68.0°, 60.0°), step: 1°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: 6.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
  NA060629_sam3sq13h05_41k_bin2_rec_cut4_bnad_part01.jpg: surface view of a chromatin fiber NA060629_sam3_sq13_h05_41k_bin2_rec_cut1part01-02_vw1-2.jpg: surface view of two chromatin fibers
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2006-06-29-1/rawdata/</p>NA060629_sam3_sq13_h05_41k_bin2_ali.mrc,  Tilt Series (Pixel Size 1.08 nm), 260.0 MB  
        
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        NA060629_sam3_sq13_h05_41k_bin2_rec_cut1_bnad_0025.mrc,  Reconstruction (Pixel Size 2.16 nm), 33.7 MB  
        
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        NA060629_sam3_sq13_h05_41k_bin2_rec_cut2_bnad_0025.mrc,  Reconstruction (Pixel Size 2.16 nm), 15.2 MB  
        
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        NA060629_sam3_sq13_h05_41k_bin2_rec_cut3_bnad_0025.mrc,  Reconstruction (Pixel Size 2.16 nm), 15.2 MB  
        
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        NA060629_sam3_sq13_h05_41k_bin2_rec_cut4_bnad.mrc,  Reconstruction (Pixel Size 2.16 nm), 20.3 MB  
        
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DOI: 10.22002/ncf70-27b90
title: mature native EIAV cores

description: Raw data files of mature native EIAV cores
description: <strong>Tilt Series Date:</strong> 2007-09-11</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> EIAV cores</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-68.0°, 68.0°), step: 2°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: 7.5 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2007-09-11-1/rawdata/</p>EIAVcore_070911_sam1_sq01h04_50k.mrc,  Tilt Series (Pixel Size 0.42 nm), 587.3 MB  
        
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        EIAVcore_070911_sam1_sq01h04_50k_bin2_full.rec,  Reconstruction (Pixel Size 0.84 nm) bin 2, 805.3 MB  
        
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        EIAVcore_070911_sam1_sq01h04_50k_bin2_rec_cone1__bnad_avg4p.mrc,  xyz slices through cone 1, 2.1 MB  
        
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        EIAVcore_070911_sam1_sq01h04_50k_bin2_rec_cone2__bnad_avg4p.mrc,  7.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2007-09-11-1/3dimage_2359/EIAVcore_070911_sam1_sq01h04_50k_bin2_rec_cone2__bnad_avg4p.mrc"
        > <i class="download icon"></i> Download </a></p>

        EIAVcore_070911_sam1_sq01h04_50k_bin2_rec_cone1__bnad_avg4p_xyz000.tif,  153.4 kB  
        
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DOI: 10.22002/4z0a5-t7q58
title: HeLa cells expressing TRIM5α-YFP

description: Raw data files of HeLa cells expressing TRIM5α-YFP
description: <strong>Tilt Series Date:</strong> 2017-02-24</p>
<strong>Data Taken By:</strong> Stephen Carter</p>
<strong>Species / Specimen:</strong> Hela cells expressing TRIM5a-YFP</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-55.0°, 55.0°), step: 1°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -10.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> None</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at s://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2017-02-24-2/rawdata/</p>tomography17.mrc,  Tilt Series (Pixel Size 3.712 nm), 3.3 GB  
        
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        sirt.rec,  Reconstruction (Pixel Size 0.0 nm), 2.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2017-02-24-2/3dimage_118437/sirt.rec"
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        sirttrim.rec,  Reconstruction (Pixel Size 0.0 nm), 164.5 MB  
        
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        tomography17_full.rec,  Reconstruction (Pixel Size 0.0 nm), 668.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2017-02-24-2/3dimage_118439/tomography17_full.rec"
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        sirttrim.rec.nad,  164.5 MB  
        
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DOI: 10.15468/dl.a8j8g9
title: Occurrence Download

description: A dataset containing 381 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bugula neritina",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 381 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030505-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f3kn49
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bugula neritina",
 "Country is Greece",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030506-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.