cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.4uxseg
title: Occurrence Download

description: A dataset containing 15774 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Oryza sativa"
 ]
}

 The dataset includes 15774 records from 317 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070292-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive132239.20241212.9.2
title: Ensifer sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132240.20241212.9.2
title: Ensifer sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132241.20241212.9.2
title: Ensifer sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132242.20241212.9.2
title: Ensifer sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132243.20241212.9.2
title: Rhizobium lentis Rashid et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.12757/bbk.bopf.2024q3.01
title: Bundesbank Online Panel - Firms (BOP-F)

description: Self-administered questionnaire: Web-based
description: The sample for the survey is drawn from the universe of firms based in Germany with a taxable turnover of more than €22,000 or at least one employer subject to social security contributions which includes roughly 1 million firms.
description: The drawing is a proportional random sample according to industry, region and size class, so that the selection probability is equal for all firms.
DOI: 10.13145/bacdive132244.20241212.9.2
title: Rhizobium bangladeshense Rashid et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.nf786r
title: Occurrence Download

description: A dataset containing 245 records in GBIF matching the query:
SELECT "year", GBIF_EEARGCode( 1000, decimalLatitude, decimalLongitude, COALESCE(coordinateUncertaintyInMeters, 1000) ) AS eeaCellCode, classKey, class, genusKey, genus, COUNT(*) AS occurrences, MIN(COALESCE(coordinateUncertaintyInMeters, 1000)) AS minCoordinateUncertaintyInMeters, MIN(GBIF_TemporalUncertainty(eventDate, null)) AS minTemporalUncertainty FROM occurrence WHERE occurrenceStatus = 'PRESENT' AND genusKey IN (2284443, 2202786, 2162003, 2161911, 2161467, 7652364, 2176168, 2149911, 3092125, 2771094, 8782549, 2457378, 2453882, 2457825, 2454645, 2465626, 2466496, 2459675, 2444141, 2444221, 2447418, 2441658, 2442664, 3266899, 2473221, 2445496, 5221394, 2443339, 4553469) AND countrycode = 'BE' AND "year" &gt;= 1900 AND hasCoordinate = TRUE AND genusKey IS NOT NULL AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID') AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH') AND (LOWER(identificationVerificationStatus) NOT IN ( 'unverified', 'unvalidated', 'not validated', 'under validation', 'not able to validate', 'control could not be conclusive due to insufficient knowledge', 'uncertain', 'unconfirmed', 'unconfirmed - not reviewed', 'validation requested' ) OR identificationVerificationStatus IS NULL) AND COALESCE(coordinateUncertaintyInMeters, 1000) &lt;= 10000 GROUP BY "year", eeaCellCode, classKey, class, genusKey, genus ORDER BY "year" DESC, eeaCellCode ASC, genusKey ASC;

 The dataset's 245 records were derived from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010362-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive132245.20241212.9.2
title: Rhizobium binae Rashid et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.15173765
title: CareV: a contrastive learning framework for adaptive V gene representations.

description: This database contains processed data associated with the publication "ClareV: a contrastive learning framework for adaptive V gene representations." The archive includes two files:





Emerson_repertoire_raw.tar.gz: This file contains repertoire data from the Emerson cohort. The data have been processed through quality control, filtering, and full-length TCR assembly. ClareV project uses these repertoire data for TCR bag construction.




processed.tar.gz: This archive includes the processed data used in the publication. The tar.gz file includes two types of data packages: a V family-level bag and a V gene-level bag. Specifically:



superbags.pk: A TCR bag file split based on the IMGT-defined classification without TCR sampling (divided by V gene or family classification). 

weights.pk: Contains the corresponding frequency values of TCR clonotypes in each repertoire.

v_gene_order.pk: Records the order of V genes in both superbags.pk and weights.pk.

smp_list.pk and smp_labels.pk: Record the sample names and labels for the repertoire data in the TCR bags.
DOI: 10.5281/zenodo.15173766
title: CareV: a contrastive learning framework for adaptive V gene representations.

description: This database contains processed data associated with the publication "ClareV: a contrastive learning framework for adaptive V gene representations." The archive includes two files:





Emerson_repertoire_raw.tar.gz: This file contains repertoire data from the Emerson cohort. The data have been processed through quality control, filtering, and full-length TCR assembly. ClareV project uses these repertoire data for TCR bag construction.




processed.tar.gz: This archive includes the processed data used in the publication. The tar.gz file includes two types of data packages: a V family-level bag and a V gene-level bag. Specifically:



superbags.pk: A TCR bag file split based on the IMGT-defined classification without TCR sampling (divided by V gene or family classification). 

weights.pk: Contains the corresponding frequency values of TCR clonotypes in each repertoire.

v_gene_order.pk: Records the order of V genes in both superbags.pk and weights.pk.

smp_list.pk and smp_labels.pk: Record the sample names and labels for the repertoire data in the TCR bags.
DOI: 10.13145/bacdive132246.20241212.9.2
title: Microbacterium rhizomatis Hoang et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132247.20241212.9.2
title: Pontivivens insulae Park et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132248.20241212.9.2
title: Shimia sagamensis Nogi et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132249.20241212.9.2
title: Acidipila rosea Okamura et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132250.20241212.9.2
title: Wenzhouxiangella marina Wang et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132252.20241212.9.2
title: Rhodococcus agglutinans Guo et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132254.20241212.9.2
title: Micromonospora palomenae Fang et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132255.20241212.9.2
title: Nocardia rhizosphaerae Wang et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132256.20241212.9.2
title: Bartonella ancashensis Mullins et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132257.20241212.9.2
title: Ursidibacter maritimus Hansen et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132259.20241212.9.2
title: Brevirhabdus pacifica Wu et al. 2015 emend. Liu et al. 2017

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132260.20241212.9.2
title: Dysgonomonas alginatilytica Kita et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132261.20241212.9.2
title: Sinimarinibacterium flocculans Zhang et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132264.20241212.9.2
title: Fructilactobacillus vespulae (Hoang et al. 2015) Zheng et al. 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.b6ddxm
title: Occurrence Download

description: A dataset containing 99175 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dianthus deltoides L.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 99175 records from 583 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010351-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c59z90q0s
title: MassIVE MSV000095655 - mRNA psi profiling using nanopore DRS reveals cell type-specific pseudouridylation
title: Pseudouridine (psi) is one of the most abundant human mRNA modifications generated via psi synthases, including TRUB1 and PUS7. Nanopore direct RNA sequencing combined with our recent tool, Mod-p ID, enables psi mapping, transcriptome-wide, without chemical derivatization of the input RNA and/or conversion to cDNA. This method is sensitive for detecting changes in positional psi occupancies across cell types, which can inform our understanding of the impact on gene expression. We sequenced, mapped, and compared the positional psi occupancy across six immortalized human cell lines derived from diverse tissue types. We found that lung-derived cells have the highest proportion of psi, while liver-derived cells have the lowest. Further, we find that conserved psi positions correspond to higher levels of protein expression than expected, suggesting translation regulation. Interestingly, we identify cell type-specific sites of psi modification in ubiquitously expressed genes. Finally, we characterize sites with multiple psi modifications on the same transcript and found that these can be conserved or cell type specific, including examples of multiple psi modifications within the same k-mer. Our data support the hypothesis that psi modifications contribute to regulating translation and that cell type-specific trans-acting factors play a major role in driving pseudouridylation.
DOI: 10.6084/m9.figshare.26790475
title: <b>Complement inhibition reshapes tumor microenvironment and enhances clinical efficacy in immunotherapy</b>

description: We conducted single-cell transcriptome (scRNA-seq) and whole-exome sequencing (WES) analyses on 10 esophageal cancer patients, consisting of four cases with complement mutations and six cases without mutations, resulting in a total of 52,727 cells after quality control. The findings indicate a significant increase in the proportion of NK cells and T cells among CD45+ cells in the complement mutation group, whereas the proportion of monocytes and macrophages decreases. Furthermore, gene set enrichment analysis (GSEA) of malignant cells reveals significant enrichment of pathways such as "interferon alpha response," "KRAS signaling DN," and "interferon gamma response" in the complement mutation group.
DOI: 10.6084/m9.figshare.26790475.v1
title: <b>Complement inhibition reshapes tumor microenvironment and enhances clinical efficacy in immunotherapy</b>

description: We conducted single-cell transcriptome (scRNA-seq) and whole-exome sequencing (WES) analyses on 10 esophageal cancer patients, consisting of four cases with complement mutations and six cases without mutations, resulting in a total of 52,727 cells after quality control. The findings indicate a significant increase in the proportion of NK cells and T cells among CD45+ cells in the complement mutation group, whereas the proportion of monocytes and macrophages decreases. Furthermore, gene set enrichment analysis (GSEA) of malignant cells reveals significant enrichment of pathways such as "interferon alpha response," "KRAS signaling DN," and "interferon gamma response" in the complement mutation group.
DOI: 10.15468/dl.qgb38u
title: Occurrence Download

description: A dataset containing 2886 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lagothrix lagothricha (Humboldt, 1812)"
 ]
}

 The dataset includes 2886 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076231-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hxd8ys
title: Occurrence Download

description: A dataset listing the 10460 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "GadmGid is COL.28_2",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset's 10460 records were derived from 183 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076209-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qrnpqq
title: Occurrence Download

description: A dataset containing 37470 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-1.67481 47.15981,-1.69969 47.15253,-1.73549 47.12947,-1.73732 47.07121,-1.6918 47.02934,-1.62808 47.02691,-1.58499 47.08092,-1.60016 47.14222,-1.67481 47.15981))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 37470 records from 208 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076232-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u4468m
title: Occurrence Download

description: A dataset containing 172418 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "GadmGid is COL.28_2",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 172418 records from 183 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076207-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/1ybz-1y91
title: RWI

description: This dataset (samplePointsCities_20240811_harmonized.csv) was used for the Rescaled Water Index (RWI) proposal. The GitHub page (https://github.com/edujusti/Rescaled-Water-Index-RWI) contains the Python and JavaScript (Google Earth Engine) scripts used for data production, statistical analyses, and result visualization of the RWI spectral index.This spectral index is a modification of MNDWI to enhance the mappings of water surfaces.
DOI: 10.15468/dl.c35ep6
title: Occurrence Download

description: A dataset containing 1248 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Austria",
 "TaxonKey is Characeae"
 ]
}

 The dataset includes 1248 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076233-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17277134
title: DACHS/MOFs/AutoMOFs_1/Measurements/X-ray_Scattering/MOUSE/Data

description: DACHS:

The DACHS (Database for Automation, Characterization and Holistic Synthesis) project aims to create completely traceable experimental data, covering syntheses, measurements, analyses, and interpretations.  DACHS_MOFs focuses on the synthesis and characterisation of metal-organic frameworks, across multiple, automation-assisted experimental series (AutoMOFs), with the overall goal of producing reproducible MOF samples through tracking of the synthesis parameters. 

DACHS_MOFs is simultaneously used to test the DACHS principles. 

This upload contain processed SAXS data (background subtracted and corrected) from AutoMOFs_1.

AutoMOFs_1

What: 12 samples (M000 - M011)

Why: Initial systems testing, consistency/repeatability 

Technique: SAXS (Small-Angle X-ray Scattering)

File Naming

Each file is named according the associated measured sample.

File structure:

Each .dat file contains three columns: q, I(q), I_error(q).

File storage:

To maintain compatability with scripts uploaded to the DACHS community, data from this upload should be stored locally in the following file path: 

DACHS/MOFs/AutoMOFs_1/Measurements/X-ray_Scattering/MOUSE/Data
DOI: 10.5281/zenodo.17277135
title: DACHS/MOFs/AutoMOFs_1/Measurements/X-ray_Scattering/MOUSE/Data

description: DACHS:

The DACHS (Database for Automation, Characterization and Holistic Synthesis) project aims to create completely traceable experimental data, covering syntheses, measurements, analyses, and interpretations.  DACHS_MOFs focuses on the synthesis and characterisation of metal-organic frameworks, across multiple, automation-assisted experimental series (AutoMOFs), with the overall goal of producing reproducible MOF samples through tracking of the synthesis parameters. 

DACHS_MOFs is simultaneously used to test the DACHS principles. 

This upload contain processed SAXS data (background subtracted and corrected) from AutoMOFs_1.

AutoMOFs_1

What: 12 samples (M000 - M011)

Why: Initial systems testing, consistency/repeatability 

Technique: SAXS (Small-Angle X-ray Scattering)

File Naming

Each file is named according the associated measured sample.

File structure:

Each .dat file contains three columns: q, I(q), I_error(q).

File storage:

To maintain compatability with scripts uploaded to the DACHS community, data from this upload should be stored locally in the following file path: 

DACHS/MOFs/AutoMOFs_1/Measurements/X-ray_Scattering/MOUSE/Data
DOI: 10.5281/zenodo.14931059
title: Dataset of "Development of high-performance and cost-effective electrode assembly for redox flow battery"

description: The following dataset contains all measurements collected during the development of a low-contact resistance bonding method for bipolar plates (BPs) with both graphite felt electrodes (GFs) and copper current collectors (CCs).  A commercially available, unbonded bipolar plate (BPcom.) served as the reference.  A weldable, extruded bipolar plate (BPext.) was bonded to the GFs using two different methods: hot-press welding (HPW) and microwave welding (MWW). The resulting electrode assemblies were tested in single-cell and stack vanadium redox flow battery (VRFB) configurations, as described in the  manuscript.
DOI: 10.15468/dl.e7yrc7
title: Occurrence Download

description: A dataset containing 572 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vitis rupestris",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 572 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053407-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pvfjky
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vitis rupestris",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 27 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053408-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nmc7ak
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vitis rupestris",
 "Country is Romania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053409-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc210wpn
title: CCDC 1877691: Experimental Crystal Structure Determination

description: Related Article: Subramani Karthick, Bing-Xiang Li, Balasubramanian Sridhar, Satoshi Aya, Srinivasan Brahadeeswaran|2025|CrystEngComm|27|6449|doi:10.1039/d5ce00721f
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lxh78
title: CCDC 2410660: Experimental Crystal Structure Determination

description: Related Article: Mengda Song, Yuting Leng, Zhiwei Xu, Yusheng Wu, Yangjie Wu
|2025|Chem.Commun.|61|15626|doi:10.1039/d5cc03496e
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.