cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.sxksn035r
title: Scaling the leaf length-times-width equation to predict total leaf area of shoots

description: Background and Aims: An individual plant consists of different-sized
 shoots, each of which consists of different-sized leaves. To predict
 plant-level physiological responses from the responses of individual
 leaves, modelling this within-shoot leaf size variation is necessary.
 Within-plant leaf trait variation has been well investigated in canopy
 photosynthesis models but less so in plant allometry. Therefore,
 integration of these two different approaches is needed. Methods: We
 focused on an established leaf-level relationship that the area of an
 individual leaf lamina is proportional to the product of its length and
 width. The geometric interpretation of this equation is that
 different-sized leaf laminas from a single species share the same basic
 form. Based on this shared basic form, we synthesized a new
 length-times-width equation predicting total shoot leaf area from the
 collective dimensions of leaves that comprise a shoot. Furthermore, we
 showed that several previously established empirical relationships,
 including the allometric relationships between total shoot leaf area,
 maximum individual leaf length within the shoot and total leaf number of
 the shoot, can be unified under the same geometric argument. We tested the
 model predictions using five species, all of which have simple leaves,
 selected from diverse taxa (Magnoliids, monocots and eudicots) and from
 different growth forms (trees, erect herbs and rosette herbs). Key
 Results: For all five species, the length-times-width equation explained
 within-species variation of total leaf area of a shoot with high accuracy
 (R2 &gt; 0.994). These strong relationships existed despite leaf
 dimensions scaling very differently between species. We also found good
 support for all derived predictions from the model (R2 &gt; 0.85).
 Conclusions: Our model can be incorporated to improve previous models of
 allometry that do not consider within-shoot size variation of individual
 leaves, providing a cross-scale linkage between individual leaf-size
 variation and shoot-size variation.
DOI: 10.26165/juelich-data/tj98bn
title: Activity validation framework, generated from HETUS 2010 date

description: Zenodo
DOI: 10.5061/dryad.vmcvdncw0
title: Linking agri-environment scheme habitat area, predation and the abundance of chick invertebrate prey to the nesting success of a declining farmland bird

description: Across Europe, farmland bird populations have continued to decline since
 the 1970s owing to the intensification of farming practices. Studies of
 such declines have tended to focus specifically on either the impacts of
 habitats (nesting and foraging), nest predators or prey availability on
 bird demographics. The study presented here provides new insights into the
 relative effects of each of these factors on Yellowhammer nest survival.
 The Yellowhammer was selected for this study as it is a UK red-listed bird
 species whose population is in decline across much of Europe. We use a
 long-term dataset of 147 nests, monitored between 1995 and 2007, to
 provide an insight into how Yellowhammer nest survival is influenced by
 nesting habitat (nest concealment and nest height), foraging habitats
 (habitat coverage within 100 m of nests), the removal of nest predators
 (Magpie Pica pica abundance as an inverse measure of avian predator
 removal through gamekeeping) and food availability (measured with a D-vac
 invertebrate suction sampler). Our results indicated that Yellowhammer
 hatching success was negatively related to the coverage of spring
 agri-environment scheme habitats, a group which represents
 invertebrate-rich agri-environment habitats, but hatching success
 increased with nest height. Fledging success was positively related to the
 coverage of the seed-rich habitat Wild Bird Seed mixture. The farm-level
 abundance of Yellowhammer chick-food invertebrates declined over the study
 period. Our results highlight the importance of simultaneously considering
 multiple agents that shape avian breeding success, i.e. their ability to
 produce offspring, to inform conservation management. Our key finding for
 land managers relates to the positive relationship between the proportion
 seed rich foraging habitat within the Yellowhammer’s average foraging
 range and Yellowhammer fledging success, which shows that a habitat
 intended primarily to provide winter food resources is also important to
 breeding birds. Chick food abundance in this habitat was, however, similar
 to broadleaf and cereal crops. We recommend that this habitat should be
 provided near to potential Yellowhammer nesting sites and adjacent to
 invertebrate-rich agri-environment scheme habitats such as beetle banks
 and conservation headlands to further boost invertebrate resources for a
 declining farmland bird.
DOI: 10.5061/dryad.n2z34tmzq
title: Source data for - Bidirectional alterations in brain temperature profoundly modulate spatiotemporal neurovascular responses in-vivo: Implications for theragnostics

description: Neurovascular coupling (NVC) is a mechanism that, amongst other known and
 latent critical functions, ensures activated brain regions are adequately
 supplied with oxygen and glucose. This biological phenomenon underpins
 non-invasive perfusion-related neuroimaging techniques, and recent reports
 have implicated NVC impairment in several neurodegenerative disorders.
 Yet, much remains unknown regarding NVC in health and disease, and only
 recently has there been burgeoning recognition of a close interplay with
 brain thermodynamics. Accordingly, we developed a novel multi-modal
 approach to systematically modulate cortical temperature and interrogate
 the spatiotemporal dynamics of sensory-evoked NVC. We show that changes in
 cortical temperature profoundly and intricately modulate NVC, with low
 temperatures associated with diminished oxygen delivery, and high
 temperatures inducing a distinct vascular oscillation. These observations
 provide novel insights into the relationship between NVC and brain
 thermodynamics, with important implications for brain-temperature-related
 therapies, functional biomarkers of elevated brain temperature, and
 in-vivo methods to study neurovascular coupling.
description: Optical imaging data were collected using a bespoke imaging
 system collecting raw data at 4 different wavelengths. This data was then
 subject to spectral analysis (described in the methods) to generate images
 over time for total blood volume (Hbt), oxyhemoglobin (Hbo) and
 deoxyhemoglobin (Hbr). Three selected regions were taken to generate time
 series data that is stored in this repository. Region 1 is the response
 from the whole whisker region, region two within the whisker region but
 close to where the middle cerebral artery emerges into the cranial window
 (where cooling will have the least effect) and region 3 again from within
 the whisker region but at its most distal portion where cooling will be
 most pronounced.  The neural data consists of raw field
 potential data taken from 16 electrodes at a sampling frequency of 24Khz.
 It also contains processed Multi-unit data from these 16 electrodes
 representing firing of action potentials over time. 
 Cortical temperature and tissue oxygen time series are also
 included. All data included is across a range of
 cortical brain temperatures described in the manuscript.
description: All data has been saved in Matlab format.
DOI: 10.5061/dryad.1rn8pk0wn
title: Data from: Biodiversity and yield trade-offs for organic farming

description: Organic farming supports higher biodiversity than conventional farming,
 but at the cost of lower yields. We conducted a meta-analysis quantifying
 the trade-off between biodiversity and yield, comparing conventional and
 organic farming. We developed a compatibility index to assess whether
 biodiversity gains from organic farming exceed yield losses, and a
 substitution index to assess whether organic farming would increase
 biodiversity in an area if maintaining total production under organic
 farming would require cultivating more land at the expense of nature.
 Overall, organic farming had 23% gain in biodiversity with a similar cost
 of yield decline. Biodiversity gain is negatively correlated to yield loss
 for microbes and plants, but no correlation was found for other taxa. The
 biodiversity and yield trade-off varies under different contexts of
 organic farming. The overall compatibility index value was close to zero,
 with negative values for cereal crops, positive for non-cereal crops, and
 varies across taxa. Our results indicate that, on average, the proportion
 of biodiversity gain is similar to the proportion of yield loss for paired
 field studies. For some taxa in non-cereal crops, switching to organic
 farming can lead to a biodiversity gain without yield
 loss.  We calculated the overall value of substitution
 index and further discussed the application of this index to evaluate when
 the biodiversity of less intensified farming system is advantageous.
DOI: 10.15468/dl.xkr3gm
title: Occurrence Download

description: A dataset containing 11383 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Aeschynomene indica"
 ]
}

 The dataset includes 11383 records from 387 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003108-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.8kprr4xqr
title: The chloroplast genomes of Sanicula (Apiaceae): plastome structure, comparative analyses, and phylogenetic relationships

description: Sanicula (Apiaceae subfamily Saniculoideae) is a taxonomically difficult
 genus of medicinal value. Its distribution center is in China, where there
 are 18 species (11 of which are endemic). To provide plastid genome
 resources, whole chloroplast genomes of five Sanicula species (S.
 flavovirens, S. giraldii, S. lamelligera, S. odorata, and S.
 rubriflora) were sequenced and compared to the previously
 published S. orthacantha plastome. These genomes exhibit a
 typical quadripartite structure. All contain 129 different genes,
 including 84 protein-coding, 37 tRNA, and 8 rRNA genes. Loci
 rpl2, matK, psbA, and ycf1 are the most
 variable. Results of maximum likelihood analysis of 90 whole
 plastome sequences from Apioideae and Saniculoideae and the outgroup
 Hydrocotyle (Araliaceae) reveal sectional relationships in
 Sanicula different from the traditional classification system,
 support the monophyly of Apioideae and its sister group relationship to
 Saniculoideae, and show concordant topologies to nrDNA ITS and
 other plastome-based
 phylogenies. Sanicula orthacantha and S.
 chinensis form a clade sister group to S.
 lamelligera and S. odorata, consecutively. These four species
 comprise a clade sister group to the clade of S. rubriflora and
 S. flavovirens, with this entire group sister to S. giraldii. The plastid
 genome resources provided herein will be important for future systematic,
 evolutionary, phylogenomic, and population-level studies of Sanicula.
DOI: 10.6084/m9.figshare.31168201
title: Annotation of Bat IGH/L/K Loci and Analysis of the Characteristics of Bat BCR-CDR3 Repertoires

description: Bats are hosts to a variety of zoonotic viruses because they carry the viruses and show no clinical signs of infection, and little is known about the mechanisms and effects of the B-cell adaptive immune response in bats. In this study, Antrozous pallidus and Rhinolophus ferrumequinum light chains were annotated at the chromosome level for the first time: the IGH locus of the Antrozous pallidus was structurally similar and conserved to that of annotated bats, with no complete IGK locus localised, and Rhinolophus ferrumequinum had a complete IGK locus (17 functional IGKVs); the IGL locus were all conserved and differentiated. BCR CDR3 library construction by 5'RACE and HTS analyses revealed that the gene usage and diversity of bats from different families show some tissue specificity, and are both homogeneous and different from humans and mice. This study will provide new ideas, tools and protocols for analysing the differences in B-cell adaptive immune responses between bats and other mammals.
DOI: 10.6084/m9.figshare.31168201.v1
title: Annotation of Bat IGH/L/K Loci and Analysis of the Characteristics of Bat BCR-CDR3 Repertoires

description: Bats are hosts to a variety of zoonotic viruses because they carry the viruses and show no clinical signs of infection, and little is known about the mechanisms and effects of the B-cell adaptive immune response in bats. In this study, Antrozous pallidus and Rhinolophus ferrumequinum light chains were annotated at the chromosome level for the first time: the IGH locus of the Antrozous pallidus was structurally similar and conserved to that of annotated bats, with no complete IGK locus localised, and Rhinolophus ferrumequinum had a complete IGK locus (17 functional IGKVs); the IGL locus were all conserved and differentiated. BCR CDR3 library construction by 5'RACE and HTS analyses revealed that the gene usage and diversity of bats from different families show some tissue specificity, and are both homogeneous and different from humans and mice. This study will provide new ideas, tools and protocols for analysing the differences in B-cell adaptive immune responses between bats and other mammals.
DOI: 10.5061/dryad.v9s4mw6zc
title: Amino acid sequences of RWP-RK domain containing proteins used for the construction of phylogenetic tree shown in Fig. 1

description: The RWP-RK protein family is a group of transcription factors
 containing the RWP-RK DNA-binding domain. The RWP-RK DNA-binding
 domain is an ancient motif that emerged before the establishment of the
 Viridiplantae (green plants), which consist of green algae and land
 plants. This domain is mostly absent in other kingdoms but widely
 distributed in Viridiplantae. In green algae,
 a liverwort, and several angiosperms, RWP-RK proteins play
 essential roles in nitrogen responses and sexual
 reproduction-associated processes, which are seemingly unrelated
 phenomena but possible interdependent processes in autotrophs.
 Consistent with related but diversified roles of
 the RWP-RK proteins in these organisms, the RWP-RK
 protein family appears to have expanded intensively, but
 independently, in the algal and land plant lineages. Therefore,
 bryophyte RWP-RK proteins occupy a unique position in
 the evolutionary process of establishing the RWP-RK protein
 family. In this review, we summarize current knowledge about the RWP-RK
 protein family in the Viridiplantae, and discuss the significance of
 bryophyte RWP-RK proteins in clarifying the relationship between
 diversification in the RWP-RK protein
 family and procurement of sophisticated
 mechanisms for adaptation to the terrestrial environment.
DOI: 10.15468/dl.swccn8
title: Occurrence Download

description: A dataset containing 552557358 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 552557358 records from 19436 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003088-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/r224pdfdmh
title: Climate Policy Uncertainty and Macroeconomic Dynamics: Financial Amplification and State-Dependent Effects

description: The data used in this paper is derived from publicly available sources:
 • Macroeconomic Data: Federal Reserve Economic Data (FRED).
 • Climate Policy Uncertainty: Environmental Policy Uncertainty Index (https://www.journals.uchicago.edu/doi/full/10.1086/729529) and Equity Market Volatility Tracker (https://fred.stlouisfed.org/series/EMVENRGYENVREG).
All necessary raw data files are included in the Data/Raw folder. No proprietary or confidential data is required to run this code.
DOI: 10.17632/r224pdfdmh.1
title: Climate Policy Uncertainty and Macroeconomic Dynamics: Financial Amplification and State-Dependent Effects

description: The data used in this paper is derived from publicly available sources:
 • Macroeconomic Data: Federal Reserve Economic Data (FRED).
 • Climate Policy Uncertainty: Environmental Policy Uncertainty Index (https://www.journals.uchicago.edu/doi/full/10.1086/729529) and Equity Market Volatility Tracker (https://fred.stlouisfed.org/series/EMVENRGYENVREG).
All necessary raw data files are included in the Data/Raw folder. No proprietary or confidential data is required to run this code.
DOI: 10.17632/dk22kbsfd6
title: Integrating the SDGs into Early Childhood Teacher Education: Supplementary Figures and Dataset

description: his dataset contains supplementary materials for the research article investigating the integration of Sustainable Development Goals (SDG) into Early Childhood Teacher Education. It includes raw and processed data organized by university, curricular year, and SDG subcategories. The dataset features 5 high-resolution figures (optimized for accessibility/daltonism) and a comprehensive Excel file containing:

SDG Subcategories distributed by university and course year.

Curricular dimensions (Sociocultural, Environmental, Economic, Sustainability) cross-referenced by University.

Dimension analysis by Curricular Area.
DOI: 10.15468/dl.wqvb6y
title: Occurrence Download

description: A dataset containing 2349 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Alburnoides economoui, Alburnoides thessalicus, Alburnoides strymonicus, Pseudorestias lirimensis, Chondrostoma esmaeilii, Chondrostoma toros, Chondrostoma ceyhanense, Tor dongnaiensis, Diplomystes incognitus, Potamoglanis wapixana, Etheostoma cyanoprosopum, Percina apina, Pristolepis procerus, Pristolepis malabarica, Channa shingon, Acantopsis rungthipae, Acantopsis dinema, Acantopsis ioa, Macrhybopsis boschungi, Macrhybopsis etnieri, Macrhybopsis pallida, Macrhybopsis tomellerii, Channa pomanensis, Oxynoemacheilus zarzianus, Oxynoemacheilus gyndes, Oxynoemacheilus hanae, Oxynoemacheilus euphraticus, Oxynoemacheilus hazarensis, Alburnoides kurui, Alburnoides freyhofi, Alburnoides kosswigi, Capoeta ferdowsii, Capoeta pyragyi, Capoeta shajariani, Alburnus sava, Capoeta razii, Capoeta aydinensis, Nothobranchius sainthousei, Nothobranchius streltsovi, Aphyodite apiaka, Aphyosemion bitteri, Aphyodite tupebas, Garra menderesensis, Brachyhypopomus alberti, Brachyhypopomus arrayae, Paramormyrops ntotom, Brachyhypopomus batesi, Tometes siderocarajensis, Tandanus bellingerensis, Xyliphius sofiae, Characidium kamakan, Characidium deludens, Brachyhypopomus belindae, Brachyhypopomus benjamini, Brachyhypopomus cunia, Brachyhypopomus flavipomus, Brachyhypopomus hamiltoni, Brachyhypopomus hendersoni, Brachyhypopomus menezesi, Brachyhypopomus palenque, Brachyhypopomus provenzanoi, Brachyhypopomus regani, Brachyhypopomus sullivani, Brachyhypopomus verdii, Anchoviella sanfranciscana, Balitora chipkali, Pethia sanjaymoluri, Carassius praecipuus, Characidium nana, Eigenmannia meeki, Cobitis dorademiri, Cobitis sipahilerae, Schistura greenei, Schistura paraxena, Pseudophoxinus mehmeti, Compsaraia iara, Physoschistura absumbra, Schismatogobius tuimanua, Schismatogobius tiola, Schismatogobius essi, Schismatogobius mondo, Schismatogobius baitabag, Schismatogobius hoesei, Schismatogobius alleni, Crossocheilus microstoma, Pseudoplatystoma punctifer, Glossogobius gnomus, Glossogobius nanus, Glossogobius pumilus, Ferrarissoaresia ferrarisi, Heptapterus mandimbusu, Bryconops tocantinensis, Leptobotia micra, Channa pseudomarulius, Crossocheilus tchangi, Creagrutus cerritulus, Odontesthes yucuman, Otothyropsis dialeukos, Ituglanis compactus, Trachydoras gepharti)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2349 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002103-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tkthd5
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sonneratia gulngai",
 "HasCoordinate is true",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "not" : {
 "HasGeospatialIssue" : [
 "is true"
 ]
 }
 }
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002104-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/dk22kbsfd6.2
title: Integrating the SDGs into Early Childhood Teacher Education: Supplementary Figures and Dataset

description: his dataset contains supplementary materials for the research article investigating the integration of Sustainable Development Goals (SDG) into Early Childhood Teacher Education. It includes raw and processed data organized by university, curricular year, and SDG subcategories. The dataset features 5 high-resolution figures (optimized for accessibility/daltonism) and a comprehensive Excel file containing:

SDG Subcategories distributed by university and course year.

Curricular dimensions (Sociocultural, Environmental, Economic, Sustainability) cross-referenced by University.

Dimension analysis by Curricular Area.
DOI: 10.17632/j2kygtpxy4
title: Freedom in Education: In Defense of Private Education

description: The paper argues in favor of private education and educational freedom of choice to enhance the quality, diversity, and adaptability of educational systems. The author compares their experience in Soviet state education, characterized by rigidity and a lack of creativity, with the opportunities offered by a system based on freedom of choice and competition. It is argued that state educational systems tend to become instruments of indoctrination, limiting the diversity of thought and individual development. In contrast, private education, supported by liberal principles such as those of Friedrich Hayek and Milton Friedman, fosters an environment where competition and innovation thrive, benefiting both students and society at large. Additionally, the essay presents international examples, such as the educational voucher systems in Sweden, the Netherlands, and Chile, demonstrating how competition among private schools can significantly improve academic outcomes and parental satisfaction while promoting greater responsibility and involvement in the educational process.
DOI: 10.17632/j2kygtpxy4.2
title: Freedom in Education: In Defense of Private Education

description: The paper argues in favor of private education and educational freedom of choice to enhance the quality, diversity, and adaptability of educational systems. The author compares their experience in Soviet state education, characterized by rigidity and a lack of creativity, with the opportunities offered by a system based on freedom of choice and competition. It is argued that state educational systems tend to become instruments of indoctrination, limiting the diversity of thought and individual development. In contrast, private education, supported by liberal principles such as those of Friedrich Hayek and Milton Friedman, fosters an environment where competition and innovation thrive, benefiting both students and society at large. Additionally, the essay presents international examples, such as the educational voucher systems in Sweden, the Netherlands, and Chile, demonstrating how competition among private schools can significantly improve academic outcomes and parental satisfaction while promoting greater responsibility and involvement in the educational process.