cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.484402
title: Hydrochemistry measured on water bottle samples at station SAVE1/40-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484171
title: Hydrochemistry measured on water bottle samples at station NAtl_1981_6N_58W/242-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484183
title: Hydrochemistry measured on water bottle samples at station NAtl_1981_6N_58W/36-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484216
title: Hydrochemistry measured on water bottle samples at station NAtl_1982_6N_58W/29-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484217
title: Hydrochemistry measured on water bottle samples at station NAtl_1982_6N_58W/30-2

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.6084/m9.figshare.24670328
title: Additional file 2 of The transcriptional factor Clr-5 is involved in cellulose degradation through regulation of amino acid metabolism in Neurospora crassa

description: Additional file 2: Table S1. List of PCR primers used in this study. Table S2. The profiles of RNA-seq reads mapped to the genome of N. crassa and the differential expression analysis. Table S3. Genes showing significantly differential transcriptional levels in strain ∆clr-5 compared to the wild-type strain in 1×VMM with 2% Avicel. Table S4. GO analysis of the 371 genes with down-regulated expression levels in strain ∆clr-5 in 1×VMM with 2% Avicel. Table S5.Transcriptional levels of CAZyme genes in strain Δclr-5 when grown in Avicel medium with histidine or leucine as the sole nitrogen source. Table S6. The genes with significantly reduced transcript levels in strain ∆clr-5 relative to WT in response to histidine and leucine. Table S7. GO analysis of the 296 genes with down-regulated expression levels in strain ∆clr-5 relative to WT in response to histidine and leucine.
DOI: 10.6084/m9.figshare.24670328.v1
title: Additional file 2 of The transcriptional factor Clr-5 is involved in cellulose degradation through regulation of amino acid metabolism in Neurospora crassa

description: Additional file 2: Table S1. List of PCR primers used in this study. Table S2. The profiles of RNA-seq reads mapped to the genome of N. crassa and the differential expression analysis. Table S3. Genes showing significantly differential transcriptional levels in strain ∆clr-5 compared to the wild-type strain in 1×VMM with 2% Avicel. Table S4. GO analysis of the 371 genes with down-regulated expression levels in strain ∆clr-5 in 1×VMM with 2% Avicel. Table S5.Transcriptional levels of CAZyme genes in strain Δclr-5 when grown in Avicel medium with histidine or leucine as the sole nitrogen source. Table S6. The genes with significantly reduced transcript levels in strain ∆clr-5 relative to WT in response to histidine and leucine. Table S7. GO analysis of the 296 genes with down-regulated expression levels in strain ∆clr-5 relative to WT in response to histidine and leucine.
DOI: 10.1594/pangaea.484403
title: Hydrochemistry measured on water bottle samples at station SAVE1/41-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484189
title: Hydrochemistry measured on water bottle samples at station NAtl_1982_6N_4N_17N/10-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484218
title: Hydrochemistry measured on water bottle samples at station NAtl_1982_6N_58W/31-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484193
title: Hydrochemistry measured on water bottle samples at station NAtl_1982_6N_4N_17N/14-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484404
title: Hydrochemistry measured on water bottle samples at station SAVE1/42-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484219
title: Hydrochemistry measured on water bottle samples at station NAtl_1982_6N_58W/32-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484405
title: Hydrochemistry measured on water bottle samples at station SAVE1/43-3

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484204
title: Hydrochemistry measured on water bottle samples at station NAtl_1982_6N_58W/17-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.6084/m9.figshare.24670010
title: Additional file 1 of Phylogenomic assessment of 23 equid alphaherpesvirus 1 isolates obtained from USA-based equids

description: Additional file 1: Table S1. Details of all 137 EHV-1 isolates used for this study including the 114 archived isolates obtained from Genbank.
DOI: 10.6084/m9.figshare.24670010.v1
title: Additional file 1 of Phylogenomic assessment of 23 equid alphaherpesvirus 1 isolates obtained from USA-based equids

description: Additional file 1: Table S1. Details of all 137 EHV-1 isolates used for this study including the 114 archived isolates obtained from Genbank.
DOI: 10.6084/m9.figshare.24670332
title: Additional file 2 of Phylogenomic assessment of 23 equid alphaherpesvirus 1 isolates obtained from USA-based equids

description: Additional file 2: Table S2. Sequencing details of the 23 EHV-1 isolates obtained from USA based hosts, showing the number of reads, number of mapped reads, mean coverage, % GC content and mapped genome length.
DOI: 10.6084/m9.figshare.24670332.v1
title: Additional file 2 of Phylogenomic assessment of 23 equid alphaherpesvirus 1 isolates obtained from USA-based equids

description: Additional file 2: Table S2. Sequencing details of the 23 EHV-1 isolates obtained from USA based hosts, showing the number of reads, number of mapped reads, mean coverage, % GC content and mapped genome length.
DOI: 10.6084/m9.figshare.26647056
title: Additional file 3 of Phylogenomic assessment of 23 equid alphaherpesvirus 1 isolates obtained from USA-based equids

description: Additional file 3: Tables S3–S25. Nucleotide substitution tables for the 23 newly sequenced 23 USA EHV-1 isolates. Details include substitution position and size, type and amino acid change (if any).
DOI: 10.6084/m9.figshare.26647056.v1
title: Additional file 3 of Phylogenomic assessment of 23 equid alphaherpesvirus 1 isolates obtained from USA-based equids

description: Additional file 3: Tables S3–S25. Nucleotide substitution tables for the 23 newly sequenced 23 USA EHV-1 isolates. Details include substitution position and size, type and amino acid change (if any).
DOI: 10.1594/pangaea.484205
title: Hydrochemistry measured on water bottle samples at station NAtl_1982_6N_58W/18-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.1594/pangaea.484206
title: Hydrochemistry measured on water bottle samples at station NAtl_1982_6N_58W/19-1

description: This data sets is part of a compilation by James Swift for the Java OceanAtlas software. Data are from various pre-WOCE sources, mainly with contributions and quality control from Joseph Reid (SIO) and NODC.
DOI: 10.6084/m9.figshare.26647059
title: Additional file 4 of Phylogenomic assessment of 23 equid alphaherpesvirus 1 isolates obtained from USA-based equids

description: Additional file 4: Table S26. Detailed results of manual bootscan recombination detection performed using an alignment containing all 137 EHV-1 isolates in RDP version 4.100 (33) (window = 1200, step = 500, replicates = 100, Jin and Nei model). Bootstrap support values of 70% or greater were considered reliable evidence of possible recombination. Evidence of recombination events was detected in most (20/23) of the newly sequenced EHV-1 isolates by manual bootscan.
DOI: 10.6084/m9.figshare.26647059.v1
title: Additional file 4 of Phylogenomic assessment of 23 equid alphaherpesvirus 1 isolates obtained from USA-based equids

description: Additional file 4: Table S26. Detailed results of manual bootscan recombination detection performed using an alignment containing all 137 EHV-1 isolates in RDP version 4.100 (33) (window = 1200, step = 500, replicates = 100, Jin and Nei model). Bootstrap support values of 70% or greater were considered reliable evidence of possible recombination. Evidence of recombination events was detected in most (20/23) of the newly sequenced EHV-1 isolates by manual bootscan.
DOI: 10.6084/m9.figshare.26647062
title: Additional file 5 of Phylogenomic assessment of 23 equid alphaherpesvirus 1 isolates obtained from USA-based equids

description: Additional file 5: Table S27. Detailed results of recombination detection using an alignment containing all 137 EHV-1 isolates in RDP version 4.100 (33). Detection methods used (with default parameters) included R (RDP), G (GENECONV) (34), M (MaxChi) (35), C (Chimaera) (36) and S (Siscan) (37).
DOI: 10.6084/m9.figshare.26647062.v1
title: Additional file 5 of Phylogenomic assessment of 23 equid alphaherpesvirus 1 isolates obtained from USA-based equids

description: Additional file 5: Table S27. Detailed results of recombination detection using an alignment containing all 137 EHV-1 isolates in RDP version 4.100 (33). Detection methods used (with default parameters) included R (RDP), G (GENECONV) (34), M (MaxChi) (35), C (Chimaera) (36) and S (Siscan) (37).
DOI: 10.6084/m9.figshare.24669864
title: Additional file 1 of FastCAR: fast correction for ambient RNA to facilitate differential gene expression analysis in single-cell RNA-sequencing datasets

description: Supplementary Material 1: Tables of all differential gene expression results between conditions with no correction, and the tested ambient RNA correction methods applied
DOI: 10.6084/m9.figshare.24669864.v1
title: Additional file 1 of FastCAR: fast correction for ambient RNA to facilitate differential gene expression analysis in single-cell RNA-sequencing datasets

description: Supplementary Material 1: Tables of all differential gene expression results between conditions with no correction, and the tested ambient RNA correction methods applied
DOI: 10.15468/dl.zyrhfb
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.421155 -33.94803, 148.421155 -33.952521, 148.418909 -33.952521, 148.418909 -33.954767, 148.430138 -33.954767, 148.430138 -33.952521, 148.423401 -33.952521, 148.423401 -33.94803, 148.421155 -33.94803))"
 ]
}

 The dataset includes 39 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070018-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.719610
title: (Table 1) Composition of hardgrounds from ODP Hole 166-1009
DOI: 10.6084/m9.figshare.24670343
title: Additional file 2 of Cadence (steps/min) and relative intensity in 61 to 85-year-olds: the CADENCE-Adults study

description: Additional file 2. Spreadsheet displaying final analytical dataset
DOI: 10.6084/m9.figshare.24670343.v1
title: Additional file 2 of Cadence (steps/min) and relative intensity in 61 to 85-year-olds: the CADENCE-Adults study

description: Additional file 2. Spreadsheet displaying final analytical dataset
DOI: 10.6084/m9.figshare.26647071
title: Additional file 3 of Cadence (steps/min) and relative intensity in 61 to 85-year-olds: the CADENCE-Adults study

description: Additional file 3. Spreadsheet displaying the data dictionary
DOI: 10.6084/m9.figshare.26647071.v1
title: Additional file 3 of Cadence (steps/min) and relative intensity in 61 to 85-year-olds: the CADENCE-Adults study

description: Additional file 3. Spreadsheet displaying the data dictionary
DOI: 10.1594/pangaea.510740
title: Petrography, carbonate mineralogy and texture of carbonate rocks of Meteor and Josephine Seamounts, eastern North Atlantic (Table 5)
DOI: 10.1594/pangaea.787663
title: (Table T1) Heavy mineral abundance of ODP Site 174-1071
DOI: 10.6084/m9.figshare.24670019
title: Additional file 1 of Identification of the cuproptosis-related ceRNA network and risk model in acute ischemic stroke by integrated bioinformatics analysis

description: Additional file 1. The 46 cuproptosis-related genes screened from other studies.
DOI: 10.6084/m9.figshare.24670019.v1
title: Additional file 1 of Identification of the cuproptosis-related ceRNA network and risk model in acute ischemic stroke by integrated bioinformatics analysis

description: Additional file 1. The 46 cuproptosis-related genes screened from other studies.
DOI: 10.6084/m9.figshare.24670346
title: Additional file 2 of Identification of the cuproptosis-related ceRNA network and risk model in acute ischemic stroke by integrated bioinformatics analysis

description: Additional file 2. The top enriched GO terms of the DECuRGs.
DOI: 10.6084/m9.figshare.24670346.v1
title: Additional file 2 of Identification of the cuproptosis-related ceRNA network and risk model in acute ischemic stroke by integrated bioinformatics analysis

description: Additional file 2. The top enriched GO terms of the DECuRGs.
DOI: 10.6084/m9.figshare.26647092.v1
title: Additional file 3 of Identification of the cuproptosis-related ceRNA network and risk model in acute ischemic stroke by integrated bioinformatics analysis

description: Additional file 3. The KEGG terms of the DECuRGs.
DOI: 10.6084/m9.figshare.26647092
title: Additional file 3 of Identification of the cuproptosis-related ceRNA network and risk model in acute ischemic stroke by integrated bioinformatics analysis

description: Additional file 3. The KEGG terms of the DECuRGs.
DOI: 10.6084/m9.figshare.26647095
title: Additional file 4 of Identification of the cuproptosis-related ceRNA network and risk model in acute ischemic stroke by integrated bioinformatics analysis

description: Additional file 4. The 254 hub genes related to AIS in the turquoise module.
DOI: 10.15468/dl.azmtyl
title: Occurrence Download

description: A dataset containing 1127 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Animalia",
 "Geometry POLYGON((-97.415771 19.539731,-97.415771 19.457528,-97.256469 19.457528,-97.256469 19.539731,-97.415771 19.539731))"
 ]
}

 The dataset includes 1127 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003457-170627171947987/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.npj7z6
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Monoon simiarum (Buch.-Ham. ex Hook.f. & Thomson) B.Xue & R.M.K.Saunders"
 ]
}

 The dataset includes 12 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048663-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ctbhd
title: Occurrence Download

description: A dataset containing 599079 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypericum perforatum L."
 ]
}

 The dataset includes 599079 records from 3008 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056170-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh0194969.10fu
title: SH0194969.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0194970.10fu
title: SH0194970.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0194971.10fu
title: SH0194971.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0194972.10fu
title: SH0194972.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0194973.10fu
title: SH0194973.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.