cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9932417.v2
title: A new environment-aware scheduling method for remanufacturing system with non-dedicated reprocessing lines using improved flower pollination algorithm

description: This is the experimental data of the manuscript entitled “A new environment-aware scheduling method for remanufacturing system with non-dedicated reprocessing lines using improved flower pollination algorithm”. All data are generated through computer simulation and saved in the file with csv format. There are 12 instances for these experiments, which cover multiple scales. The datasets show the carbon emission signature, the weights for two objectives, the time to complete the corresponding operations in the corresponding workstations or reprocessing cells. The number of disassembly workstations, reassembly workstations, and reprocessing cells in each reprocessing line, the power consumptions of reassembly workstations and reprocessing cells in idle status and start-stop status, and the start-up time of reassembly workstations and reprocessing cells in each reprocessing line also shows in the datasets.
DOI: 10.6084/m9.figshare.9932360
title: Experimental DNA demethylation associates with changes in growth and gene expression of oak tree seedlings

description: Datasets on DNA methylation levels, phenotypic measurements, and soil microbiome (and associated metadata) for Quercus lobata seedlings treated with 5-Azacytidine and controls<br>Abstract: Epigenetic modifications such as DNA methylation, where methyl groups are added to cytosine base pairs, have the potential to impact phenotypic variation and gene expression, and could influence plant response to changing environments. One way to test this impact is through the application of chemical demethylation agents, such as 5-Azacytidine, which inhibit DNA methylation and lead to a partial reduction in DNA methylation across the genome. In this study, we treated 5-month-old seedlings of the tree, <i>Quercus lobata</i>, with foliar application of 5-Azacytidine to test whether a reduction in genome-wide methylation would cause differential gene expression and change phenotypic development. First, we demonstrate that demethylation treatment led to 3-6% absolute reductions and 6.7-43.2% relative reductions in genome-wide methylation across CG, CHG, and CHH sequence contexts, with CHH showing the strongest relative reduction. Seedlings treated with 5-Azacytidine showed a substantial reduction in new growth, which was less than half that of control seedlings. We tested whether this result could be due to impact of the treatment on the soil microbiome and found minimal differences in the soil microbiome between two groups, although with limited sample size. We found no significant differences in leaf fluctuating asymmetry (<i>i.e.</i>, deviations from bilateral symmetry), which has been found in other studies. Nonetheless, treated seedlings showed differential expression of a total of 23 genes. Overall, this study provides initial evidence that DNA methylation is involved in gene expression and phenotypic variation in seedlings and suggests that removal of DNA methylation affects plant development.
DOI: 10.6084/m9.figshare.9932303
title: data.xlsx

description: These data were used in the articled titled "Soil alters seedling establishment responses to climate" by Kevin Ford and Janneke HilleRisLambers, and published in <i>Ecology Letters</i>.
DOI: 10.6084/m9.figshare.9932360.v2
title: Experimental DNA demethylation associates with changes in growth and gene expression of oak tree seedlings

description: Datasets on DNA methylation levels, phenotypic measurements, and soil microbiome (and associated metadata) for Quercus lobata seedlings treated with 5-Azacytidine and controls<br>Abstract: Epigenetic modifications such as DNA methylation, where methyl groups are added to cytosine base pairs, have the potential to impact phenotypic variation and gene expression, and could influence plant response to changing environments. One way to test this impact is through the application of chemical demethylation agents, such as 5-Azacytidine, which inhibit DNA methylation and lead to a partial reduction in DNA methylation across the genome. In this study, we treated 5-month-old seedlings of the tree, <i>Quercus lobata</i>, with foliar application of 5-Azacytidine to test whether a reduction in genome-wide methylation would cause differential gene expression and change phenotypic development. First, we demonstrate that demethylation treatment led to 3-6% absolute reductions and 6.7-43.2% relative reductions in genome-wide methylation across CG, CHG, and CHH sequence contexts, with CHH showing the strongest relative reduction. Seedlings treated with 5-Azacytidine showed a substantial reduction in new growth, which was less than half that of control seedlings. We tested whether this result could be due to impact of the treatment on the soil microbiome and found minimal differences in the soil microbiome between two groups, although with limited sample size. We found no significant differences in leaf fluctuating asymmetry (<i>i.e.</i>, deviations from bilateral symmetry), which has been found in other studies. Nonetheless, treated seedlings showed differential expression of a total of 23 genes. Overall, this study provides initial evidence that DNA methylation is involved in gene expression and phenotypic variation in seedlings and suggests that removal of DNA methylation affects plant development.
DOI: 10.6084/m9.figshare.9932303.v1
title: data.xlsx

description: These data were used in the articled titled "Soil alters seedling establishment responses to climate" by Kevin Ford and Janneke HilleRisLambers, and published in <i>Ecology Letters</i>.
DOI: 10.6084/m9.figshare.9932360.v1
title: Experimental DNA demethylation associates with changes in phenotype and gene expression of tree seedlings

description: Datasets on DNA methylation levels, phenotypic measurements, and soil microbiome (and associated metadata) for Quercus lobata seedlings treated with 5-Azacytidine and controls
DOI: 10.23641/asha.9932279
title: Differential outcomes (Lewis et al., 2019)

description: <b>Purpose: </b>The goal of this study was to determine whether adolescent outcomes for individuals with histories of early speech sound disorders (SSD) could be differentiated by speech and language skills at earlier ages (preschool, 4–6 years, and school age, 7–10 years).<b>Method: </b>The study used a retrospective longitudinal design. Participants with and without histories of early SSD were classified in adolescence as having no SSD, resolved SSD, low multisyllabic word (MSW; difficulty with MSW repetition but no errors in conversational speech), or persistent speech disorders (errors in both conversational speech and MSW repetition). Analysis of variance was employed to determine whether early speech, language, and literacy skills distinguished these adolescent outcome groups.<b>Results:</b> Preschool and school-age skills differed for adolescents whose SSD had resolved from those who had persistent speech errors. Adolescents with errors solely in production of MSWs (Low MSW) did not differ in early speech and language skills from adolescents who had difficulty with both MSWs and persistent errors in conversation.<b>Conclusions:</b> Speech and language assessments earlier in childhood can help establish risks for persistent SSD and other language and literacy difficulties in adolescence. Early identification of these clinically relevant subgroups of SSD may allow for early targeted interventions.<br><b>Supplemental Material S1. </b>Generalized estimating equation (GEE) analyses predicting adolescent outcomes from preschool measures. <br><b>Supplemental Material S2.</b> Generalized estimating equation (GEE) analyses predicting adolescent outcomes from school age measures. <br>Lewis, B. A., Freebairn, L., Tag, J., Igo, R. P., Jr, Ciesla, A., Iyengar, S. K., ... Taylor, H. G. (2019). Differential long-term outcomes for individuals with histories of preschool speech sound disorders. <i>American Journal of Speech-Language Pathology</i><i>, </i><i>28</i>(4), 1582–1596<i>. </i>https://doi.org/10.1044/2019_AJSLP-18-0247
DOI: 10.23641/asha.9932279.v1
title: Differential outcomes (Lewis et al., 2019)

description: <b>Purpose: </b>The goal of this study was to determine whether adolescent outcomes for individuals with histories of early speech sound disorders (SSD) could be differentiated by speech and language skills at earlier ages (preschool, 4–6 years, and school age, 7–10 years).<b>Method: </b>The study used a retrospective longitudinal design. Participants with and without histories of early SSD were classified in adolescence as having no SSD, resolved SSD, low multisyllabic word (MSW; difficulty with MSW repetition but no errors in conversational speech), or persistent speech disorders (errors in both conversational speech and MSW repetition). Analysis of variance was employed to determine whether early speech, language, and literacy skills distinguished these adolescent outcome groups.<b>Results:</b> Preschool and school-age skills differed for adolescents whose SSD had resolved from those who had persistent speech errors. Adolescents with errors solely in production of MSWs (Low MSW) did not differ in early speech and language skills from adolescents who had difficulty with both MSWs and persistent errors in conversation.<b>Conclusions:</b> Speech and language assessments earlier in childhood can help establish risks for persistent SSD and other language and literacy difficulties in adolescence. Early identification of these clinically relevant subgroups of SSD may allow for early targeted interventions.<br><b>Supplemental Material S1. </b>Generalized estimating equation (GEE) analyses predicting adolescent outcomes from preschool measures. <br><b>Supplemental Material S2.</b> Generalized estimating equation (GEE) analyses predicting adolescent outcomes from school age measures. <br>Lewis, B. A., Freebairn, L., Tag, J., Igo, R. P., Jr, Ciesla, A., Iyengar, S. K., ... Taylor, H. G. (2019). Differential long-term outcomes for individuals with histories of preschool speech sound disorders. <i>American Journal of Speech-Language Pathology</i><i>, </i><i>28</i>(4), 1582–1596<i>. </i>https://doi.org/10.1044/2019_AJSLP-18-0247
DOI: 10.6084/m9.figshare.9932189
title: HPLC results

description: HPLC for delta-toxin in <i>S. aureus</i><br>
DOI: 10.6084/m9.figshare.9932189.v1
title: HPLC results

description: HPLC for delta-toxin in <i>S. aureus</i><br>
DOI: 10.6084/m9.figshare.9932162
title: Binary files for the ecco-v4-py Python package.

description: Binary files for the ecco-v4-py Python package. <br><br>basin mask for llc90 grid basins.meta, basins.data <br><br>wet/dry mask for llc90 grid: <br> hFacC.data, hFacC.meta<br>example 3D state variable field: <br> state_3d_set1.0000000732.data, <br> state_3d_set1.0000000732.meta
DOI: 10.6084/m9.figshare.9931370
title: Rabbit abundance dataset

description: Data collected on the field in Tenerife (Canary Islands) about rabbit abundance and related environmental variables.<br><br>It corresponds to the article entitled "Forecasted increase in invasive rabbit spread into ecosystems of an oceanic island (Tenerife) under climate change"<br>Legend and abbreviations:urban_dist = distance to urban areas (km)human_dist = distance to anthropized areas (km) (including any human impact) roads_dist = distance to roads (km)ann_temp = Annual Mean Temperature * 10min_temp = Min Temperature of Warmest Month * 10max_temp = Max Temperature of Warmest Month * 10ann_prec = Annual Precipitation<br>Litologyhard = roughly rocky areas or solidified lava flowssoft = sedimentary areas or areas with large amounts of pyroclastic materials<br>
DOI: 10.6084/m9.figshare.9931286
title: Casedata_QVT

description: IEEE 118-bus test system is provided.
DOI: 10.6084/m9.figshare.9931286.v1
title: Casedata_QVT

description: IEEE 118-bus test system is provided.
DOI: 10.6084/m9.figshare.9930110
title: secondary_structures_of_eukaryotic_group_II_introns_rfam_set(multicopy)

description: secondary_structures_of_eukaryotic_group_II_introns_rfam_set(multicopy)
DOI: 10.6084/m9.figshare.9930107
title: Datasheet_pseudoscorpions

description: Data regarding body, chela size and chela/body size ratio and a set of behavioral traits of the social pseudoscorpion <i>Paratemnoides nidificator </i>(Pseudoscorpiones) during predation tests. 'Before_cap' sheets represent observations of the colonies until prey capture (15 min obs). 'After_cap' sheets indicate observations during the feeding process (1 hour obs).
DOI: 10.6084/m9.figshare.9930020
title: Determinants of child safety seat use among parents in an International Safe Community, Tehran, Iran

description: <b>Objective:</b> Road traffic accidents are a global issue and serious threat for public health. Children are at high risk of serious injury or death from motor vehicle crashes. Child safety seats (CSSs) can reduce the risk of death and serious injury in children. This study was done to determine the prevalence of child safety seat use in vehicles and the factors influencing their use in a safe society (Tehran, Iran) in 2015. <b>Methods:</b> In this cross-sectional study, 804 parents with children under 12 years old who owned private cars were questioned in different areas of Tehran. A questionnaire included demographic data, and 2 specific questionnaires were used for families that used a CSS and those did not use a CSS. Univariate and multivariate binary logistic regression analyses were conducted. Crude and adjusted odds ratios (AORs) with 95% confidence intervals (CIs) were calculated. All analyses were carried out using SPSS 21. <b>Results:</b> The prevalence of child safety seat use was 18.7% and was significantly higher among parents with an income greater than 50 million rials/month, parents who received child safety seat recommendations, parents living in the north of Tehran, and fathers with more driving experience. Age, weight, and height of children were also factors that influenced the use of child safety seats. The most common reasons for parents to use child safety seats was awareness about the benefits of this device and fear of harm to the child, and the most common reasons for nonuse were child intolerance while sitting in the seat and cost. <b>Conclusion:</b> The prevalence of child safety seat use in Tehran is very low, and most parents are not aware of the importance of child safety seats. Comprehensive programs, including legislation, law enforcement, public education, and publicity to promote the benefits of using CSSs, in Tehran can be an effective step toward increasing the use of child safety devices.
DOI: 10.6084/m9.figshare.9930107.v1
title: Datasheet_pseudoscorpions2

description: Data regarding body and chela size and a set of behavioral traits of the social pseudoscorpion <i>Paratemnoides nidificator </i>(Pseudoscorpiones) during predation tests. 'Precap' sheets represent observations of the colonies until the prey capture. 'Poscap' sheets indicate observations during the feeding process.
DOI: 10.6084/m9.figshare.9930110.v1
title: secondary_structures_of_eukaryotic_group_II_introns_rfam_set(multicopy)

description: secondary_structures_of_eukaryotic_group_II_introns_rfam_set(multicopy)
DOI: 10.6084/m9.figshare.9930017
title: secondary_structures_of_eukaryotic_group_II_introns_rfam_set(no_yadd_homologous)

description: secondary_structures_of_eukaryotic_group_II_introns_rfam_set(no_yadd_homologous)
DOI: 10.6084/m9.figshare.9930020.v1
title: Determinants of child safety seat use among parents in an International Safe Community, Tehran, Iran

description: <b>Objective:</b> Road traffic accidents are a global issue and serious threat for public health. Children are at high risk of serious injury or death from motor vehicle crashes. Child safety seats (CSSs) can reduce the risk of death and serious injury in children. This study was done to determine the prevalence of child safety seat use in vehicles and the factors influencing their use in a safe society (Tehran, Iran) in 2015. <b>Methods:</b> In this cross-sectional study, 804 parents with children under 12 years old who owned private cars were questioned in different areas of Tehran. A questionnaire included demographic data, and 2 specific questionnaires were used for families that used a CSS and those did not use a CSS. Univariate and multivariate binary logistic regression analyses were conducted. Crude and adjusted odds ratios (AORs) with 95% confidence intervals (CIs) were calculated. All analyses were carried out using SPSS 21. <b>Results:</b> The prevalence of child safety seat use was 18.7% and was significantly higher among parents with an income greater than 50 million rials/month, parents who received child safety seat recommendations, parents living in the north of Tehran, and fathers with more driving experience. Age, weight, and height of children were also factors that influenced the use of child safety seats. The most common reasons for parents to use child safety seats was awareness about the benefits of this device and fear of harm to the child, and the most common reasons for nonuse were child intolerance while sitting in the seat and cost. <b>Conclusion:</b> The prevalence of child safety seat use in Tehran is very low, and most parents are not aware of the importance of child safety seats. Comprehensive programs, including legislation, law enforcement, public education, and publicity to promote the benefits of using CSSs, in Tehran can be an effective step toward increasing the use of child safety devices.
DOI: 10.6084/m9.figshare.9930107.v3
title: Datasheet_pseudoscorpions

description: Data regarding body, chela size and chela/body size ratio and a set of behavioral traits of the social pseudoscorpion <i>Paratemnoides nidificator </i>(Pseudoscorpiones) during predation tests. 'Before_cap' sheets represent observations of the colonies until prey capture (15 min obs). 'After_cap' sheets indicate observations during the feeding process (1 hour obs).
DOI: 10.6084/m9.figshare.9930110.v2
title: secondary_structures_of_eukaryotic_group_II_introns_rfam_set(multicopy)

description: secondary_structures_of_eukaryotic_group_II_introns_rfam_set(multicopy)
DOI: 10.6084/m9.figshare.9930107.v2
title: Datasheet_pseudoscorpions

description: Data regarding body, chela size and chela/body size ratio and a set of behavioral traits of the social pseudoscorpion <i>Paratemnoides nidificator </i>(Pseudoscorpiones) during predation tests. 'Before_cap' sheets represent observations of the colonies until prey capture (15 min obs). 'After_cap' sheets indicate observations during the feeding process (1 hour obs).
DOI: 10.6084/m9.figshare.9930110.v3
title: secondary_structures_of_eukaryotic_group_II_introns_rfam_set(multicopy)

description: secondary_structures_of_eukaryotic_group_II_introns_rfam_set(multicopy)
DOI: 10.6084/m9.figshare.9930017.v2
title: secondary_structures_of_eukaryotic_group_II_introns_rfam_set(no_yadd_homologous)

description: secondary_structures_of_eukaryotic_group_II_introns_rfam_set(no_yadd_homologous)
DOI: 10.6084/m9.figshare.9929990
title: Perceived factors associated with boda-boda (motorcycle) accidents in Kampala, Uganda

description: <b>Objective:</b> According to the United Nations, nearly 1.25 million people are killed and up to 50 million people are injured on the world’s roads every year. Uganda loses about 10 people daily to road accidents, costing about US$1.2 billion annually, which represents about 5% of the gross domestic product (GDP). The objective of this study was to identify causal factors that can be associated with boda-boda accidents in Uganda. <b>Method:</b> A cross sectional study assessed 200 boda-boda riders in the urban areas of Kampala, Uganda. Interviews using semistructured questionnaires were administered to all participants. Data were entered in Excel and imported to STATA for analysis. Multivariate and bivariate analyses were conducted to determine factors that influenced accident risk perception. All variables that were significant at a bivariate level and thought to be theoretically important in influencing the outcome variable were included in a logistic regression model. All tests were performed at a significance of <i>P</i> <b>Results:</b> Competition for passengers with other public transport operators (83%), negligence of road safety rules (78%), and inadequate helmet usage (62%) were the main factors perceived to be associated with boda-boda accidents. Other factors identified by the respondents include age of the boda-boda rider (58%) and drug use (56%; <i>P</i> <b>Conclusions:</b> This study revealed behavioral factors by all public transport users as the main factors associated with boda-boda accidents in urban Kampala. This demonstrates the need for holistic interventions to address such boda-boda accidents in Uganda. Such interventions can be through digitization of transport system for clients to engage remotely with the transport operators, routine refresher trainings of all transport operators, and construction of lanes for boda-boda riders.
DOI: 10.6084/m9.figshare.9930017.v4
title: secondary_structures_of_eukaryotic_group_II_introns_rfam_set(no_yadd_homologous)

description: secondary_structures_of_eukaryotic_group_II_introns_rfam_set(no_yadd_homologous)
DOI: 10.6084/m9.figshare.9930017.v3
title: secondary_structures_of_eukaryotic_group_II_introns_rfam_set(no_yadd_homologous)

description: secondary_structures_of_eukaryotic_group_II_introns_rfam_set(no_yadd_homologous)
DOI: 10.6084/m9.figshare.9929990.v1
title: Perceived factors associated with boda-boda (motorcycle) accidents in Kampala, Uganda

description: <b>Objective:</b> According to the United Nations, nearly 1.25 million people are killed and up to 50 million people are injured on the world’s roads every year. Uganda loses about 10 people daily to road accidents, costing about US$1.2 billion annually, which represents about 5% of the gross domestic product (GDP). The objective of this study was to identify causal factors that can be associated with boda-boda accidents in Uganda. <b>Method:</b> A cross sectional study assessed 200 boda-boda riders in the urban areas of Kampala, Uganda. Interviews using semistructured questionnaires were administered to all participants. Data were entered in Excel and imported to STATA for analysis. Multivariate and bivariate analyses were conducted to determine factors that influenced accident risk perception. All variables that were significant at a bivariate level and thought to be theoretically important in influencing the outcome variable were included in a logistic regression model. All tests were performed at a significance of <i>P</i> <b>Results:</b> Competition for passengers with other public transport operators (83%), negligence of road safety rules (78%), and inadequate helmet usage (62%) were the main factors perceived to be associated with boda-boda accidents. Other factors identified by the respondents include age of the boda-boda rider (58%) and drug use (56%; <i>P</i> <b>Conclusions:</b> This study revealed behavioral factors by all public transport users as the main factors associated with boda-boda accidents in urban Kampala. This demonstrates the need for holistic interventions to address such boda-boda accidents in Uganda. Such interventions can be through digitization of transport system for clients to engage remotely with the transport operators, routine refresher trainings of all transport operators, and construction of lanes for boda-boda riders.