cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6325312
title: Data for "Random forest-based modeling of stream nutrients at national level in a data-scarce region"

description: The aim of the study was to model annual total nitrogen (TN) and total phosphorus (TP) concentrations at national level using an ML approach. We used water quality data originating from the Environmental Monitoring Database KESE to train RF models for nutrient concentration prediction in 242 catchments across Estonia. A total of 82 environmental variables were used as predictors in the models. In order to yield the best results, a feature selection strategy along with hyperparameter optimization was performed when building the models. The models are applicable for predicting nutrient loads on an annual level, e.g. for the purpose of reporting national level water quality statistics in regional projects, such as HELCOM. The results showed that this relatively basic RF modeling approach can have a performance similar to process-based models. Moreover, these models are easier to reuse and apply on a larger scale, since the required inputs can be derived from freely available datasets (e.g. satellite imagery)

This repository contains the input data used for building the RF models and the files describing the modeling results.

The description of the files is given in the README.txt file.

Virro, H., Kmoch, A., Vainu, M. and Uuemaa, E., 2022. Random forest-based modeling of stream nutrients at national level in a data-scarce region. Science of The Total Environment, 840, p.156613.

https://doi.org/10.1016/j.scitotenv.2022.156613
DOI: 10.15468/dl.btuy83
title: Occurrence Download

description: A dataset containing 8642 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "GadmGid is CHN.28_1",
 "TaxonKey is Rosaceae"
 ]
}

 The dataset includes 8642 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025924-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2r4xur
title: Occurrence Download

description: A dataset containing 1024 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((15.20377 40.81935,15.39514 40.81935,15.39514 40.95664,15.20377 40.95664,15.20377 40.81935))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1024 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025926-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xewjuk
title: Occurrence Download

description: A dataset containing 618 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((15.20377 40.81935,15.39514 40.81935,15.39514 40.95664,15.20377 40.95664,15.20377 40.81935))",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 618 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025927-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g9dd6b
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "DatasetKey is one of (Digitalización y Sistematización de las Colecciones Biológicas Nacionales del Instituto de Biología, UNAM (Plantas vasculares), NMNH Extant Specimen Records (USNM, US), The New York Botanical Garden Herbarium (NY), Digitalización y sistematización de las colecciones biológicas del INECOL (Herbario), Plant Resources Center, Etapa final de la captura y catalogación del Herbario del Instituto de Ecología, A.C., Centro Regional del Bajío, Tropicos Specimens Non-MO, Catálogo electrónico de especímenes depositados en el Herbario de la Universidad de Texas en Austin, Fase IV (Ejemplaresimagenes), Pl@ntNet automatically identified occurrences)",
 "TaxonKey is Pereskia Mill."
 ]
}

 The dataset includes 80 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025928-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a7qnsn
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alzoniella marianae Arconada, Rolán & Boeters, 2007"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025929-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5th8c02p
title: MassIVE MSV000095923 - An atlas of RNA-dependent proteins in cell division reveals the riboregulation of mitotic protein-protein interactions
title: Ribonucleoprotein complexes are dynamic assemblies of RNA with RNA-binding proteins (RBPs), which can modulate the fate of the RNA molecules from transcription to degradation. Vice versa, RNA can regulate the interactions and functions of the associated proteins. Dysregulation of RBPs is linked to diseases such as cancer and neurological disorders. RNA and RBPs are present in mitotic structures like the centrosomes and spindle microtubules, but their influence on mitotic spindle integrity remains unknown. Thus, we applied the R-DeeP strategy for the proteome-wide identification of RNA-dependent proteins and complexes to cells synchronized in mitosis versus interphase. The resulting atlas of RNA-dependent proteins in cell division can be accessed through the R-DeeP 3.0 database (R-DeeP3.dkfz.de). It revealed key mitotic factors as RNA-dependent such as AURKA, KIFC1 and TPX2 that were linked to RNA despite their lack of canonical RNA-binding domains. KIFC1 was identified as a new interaction partner and phosphorylation substrate of AURKA at S349 and T359. In addition, KIFC1 interacted with both, AURKA and TPX2, in an RNA-dependent manner. Our data suggest a riboregulation of mitotic protein-protein interactions during spindle assembly, offering new perspectives on the control of cell division processes by RNA-protein complexes.
DOI: 10.15468/dl.e6zwy3
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alzoniella montana (Rolán, 1993)"
 ]
}

 The dataset includes 19 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025931-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.habnsd
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alzoniella asturica (Boeters & Rolán, 1988)"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025933-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nmjw42
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Boetersiella davisi Arconada & Ramos, 2001"
 ]
}

 The dataset includes 16 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025935-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8stkyq
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Lepanthes mekynochila Garay & Dunst."
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025936-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d8nfce
title: Occurrence Download

description: A dataset containing 28841 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "Year is greater than or equal to 1999",
 "TaxonKey is Acacia dealbata Link",
 {
 "not" : {
 "DatasetKey" : [
 "is Pl@ntNet automatically identified occurrences"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 }
 ]
}

 The dataset includes 28841 records from 275 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025934-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/018b9124-ffbf-45f2-979a-7a22d465564b.v2
title: 4DHydro WP5 exp 2.1 dataset wflow_sbm - Rhine River

description: This data package contains the outputs from WP5 experiment 2.1 for the wflow_sbm hydrological model (van Verseveld et al., 2024; https://www.deltares.nl/en/software-and-data/products/wflow), which was developed at Deltares, for the test period 1990 - 2021 for the 4DHydro benchmark regions Rhine and Po. The model is forced with the EMO-1 meteorological forcing (https://data.jrc.ec.europa.eu/dataset/0bd84be4-cec8-4180-97a6-8b3adaac4d26), using the Hargreaves method to determine the potential evaporation (a required variable for wflow_sbm). The output consists of the model variables discharge, soil moisture, evapotranspiration and total water storage for these regions at three different model resolutions: 30 arcsecond (approximately 1 km), 2 arcminutes (approximately 4 km) and 4 arcminutes (approximately 8 km). See https://opensciencedata.4dhydro.eu/ for a STAC catalog with links to outputs from other models. Outputs are formatted according to the 4dHydro working package 2 storage protocol (Droppers & Rakovec et al., 2024).
DOI: 10.4121/59d94d48-21c3-40c5-b120-5d543b865737.v2
title: 4DHydro WP5 exp 2.1 dataset wflow_sbm - Tugela River

description: This data package contains the outputs from WP5 experiment 2.1 for the wflow_sbm hydrological model (van Verseveld et al., 2024; https://www.deltares.nl/en/software-and-data/products/wflow), which was developed at Deltares, for the test period 1990 - 2021 for the 4DHydro benchmark regions Rhine and Po. The model is forced with the EMO-1 meteorological forcing (https://data.jrc.ec.europa.eu/dataset/0bd84be4-cec8-4180-97a6-8b3adaac4d26), using the Hargreaves method to determine the potential evaporation (a required variable for wflow_sbm). The output consists of the model variables discharge, soil moisture, evapotranspiration and total water storage for these regions at three different model resolutions: 30 arcsecond (approximately 1 km), 2 arcminutes (approximately 4 km) and 4 arcminutes (approximately 8 km). See https://opensciencedata.4dhydro.eu/ for a STAC catalog with links to outputs from other models. Outputs are formatted according to the 4dHydro working package 2 storage protocol (Droppers & Rakovec et al., 2024).
DOI: 10.4121/6e14e25b-cb2b-434e-a852-1340ed8f0eda.v2
title: 4DHydro WP5 exp 2.1 dataset wflow_sbm - Po River

description: This data package contains the outputs from WP5 experiment 2.1 for the wflow_sbm hydrological model (van Verseveld et al., 2024; https://www.deltares.nl/en/software-and-data/products/wflow), which was developed at Deltares, for the test period 1990 - 2021 for the 4DHydro benchmark regions Rhine and Po. The model is forced with the EMO-1 meteorological forcing (https://data.jrc.ec.europa.eu/dataset/0bd84be4-cec8-4180-97a6-8b3adaac4d26), using the Hargreaves method to determine the potential evaporation (a required variable for wflow_sbm). The output consists of the model variables discharge, soil moisture, evapotranspiration and total water storage for these regions at three different model resolutions: 30 arcsecond (approximately 1 km), 2 arcminutes (approximately 4 km) and 4 arcminutes (approximately 8 km). See https://opensciencedata.4dhydro.eu/ for a STAC catalog with links to outputs from other models. Outputs are formatted according to the 4dHydro working package 2 storage protocol (Droppers & Rakovec et al., 2024).
DOI: 10.4121/88678f02-2a34-4452-8534-6361fc34d06b.v3
title: Data underlying the publication: Direct numerical simulation of turbulent open channel flow

description: ==============================================================================DNS DATA OF TURBULENT CLOSED AND OPEN CHANNEL FLOWIN BOXES OF Lx/h = 12pi, Lz/h = 4pi FOR Re_tau = 200,400,600,900                     ==============================================================================Authors: C. Bauer, Y. Sakai & M. Uhlmann                                    correspondence: christian.bauer@dlr.deReference: Bauer, C., Sakai, Y., Uhlmann, M. (2024). <em>Direct numerical simulation of turbulent open channel flow: Streamwise turbulence intensity scaling and its relation to large-scale coherent motions.</em> Progress in turbulence X, Springer proceedings in physics 404, p. 311-317, https://doi.org/10.1007/978-3-031-55924-2_42Numerical Method: Kim, Moin & Moser, 1987, J. Fluid Mech. vol 177, 133-166  ---------------------------------------------------------------------------------------------------------------------------- The data was obtained from direct numerical simulations of open and closed channel flow using a pseudo-spectral method which solves the wall-normal velocity/vorticity formulation of the Navier-Stokes equation introduced by Kim et al (1987). The flow domain contains Nx*Ny*Nz grid points with equidistant grid spacing in x and z direction and a Chebyshev-Gauss-Lobatto (CGL) grid in y direction. Note that the open channel flow simulations feature a grid refinement towards both the no-slip and the free-slip boundary condition.----------------------------------------------------------------------------------------------------------------------------For detailed information see data-sheet-ocf.pdf and data-sheet-ccf.pdf
DOI: 10.5281/zenodo.13645460
title: 20240902_INSTADINE_Rubric

description: The data files contains numerical data collected form the 30 universities across four European countries.
DOI: 10.5281/zenodo.13645461
title: 20240902_INSTADINE_Rubric

description: The data files contains numerical data collected form the 30 universities across four European countries.
DOI: 10.15468/dl.hs4z7u
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Myoxanthus congestus (A.Rich. & Galeotti) Soto Arenas"
 ]
}

 The dataset includes 68 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025937-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8mr8ep
title: Occurrence Download

description: A dataset containing 78 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chalara fraxinea T.Kowalski"
 ]
}

 The dataset includes 78 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025938-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pk2etk
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "DatasetKey is one of (Digitalización y Sistematización de las Colecciones Biológicas Nacionales del Instituto de Biología, UNAM (Plantas vasculares), NMNH Extant Specimen Records (USNM, US), The New York Botanical Garden Herbarium (NY), Digitalización y sistematización de las colecciones biológicas del INECOL (Herbario), Plant Resources Center, Etapa final de la captura y catalogación del Herbario del Instituto de Ecología, A.C., Centro Regional del Bajío, Tropicos Specimens Non-MO, Catálogo electrónico de especímenes depositados en el Herbario de la Universidad de Texas en Austin, Fase IV (Ejemplaresimagenes), Pl@ntNet automatically identified occurrences)",
 "TaxonKey is Pereskia Mill."
 ]
}

 The dataset includes 80 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025939-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.55cpce
title: Occurrence Download

description: A dataset containing 658 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Spain",
 "TaxonKey is Quercus canariensis Willd."
 ]
}

 The dataset includes 658 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025940-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1184/r1/25939567
title: Pittsburgh Imaging Project (PIP) Dataset

description:  The Pittsburgh Imaging Project (PIP) fMRI dataset was generated for the research publication Gianaros et al. (2017). Participants conducted interleaved trials of congruent and incongruent phases of the both the Stroop and Multi-Source Inference Tasks (MSIT) with 10 second fixation rest in between trials. There was a separate resting state scan collected from these participants where they simply stared at a fixed crosshair. 
<br>
 Initially this data was meant to be utilized as a stressor evoked task since the Stroop and MSIT tasks are adaptive, whereby higher accuracy scores in the incongruent phases led to shorter intervals between trials. The number of trials were matched to the congruent phases of the task. The data has been processed from functional connectivity matrices to edge time series (Faskowitz et al., 2020) co-fluctuations for the entire timescale of the fMRI task. 
<br>
 In our research, in the linked preprint below, this dataset was used to examine a network perspective of the brain. Cortical flexibility is shown to be paramount to the resolution of a number of tasks, both novel and habitual. During these instances of heightened cortical flexibility there is network change from integrative (more communication across specialized brain regions) to segregative (more communication within regions or hubs) states. We sought to examine whether the basal ganglia and cerebellum act as control states for initiating integration and segregation of cortical networks respectively. 
<br>
arXiv preprint:
https://arxiv.org/abs/2408.07977
<br>
References
Gianaros, P. J., Sheu, L. K., Uyar, F., Koushik, J., Jennings, J. R., Wager, T. D., Singh, A., & Verstynen, T. D. (2017). A Brain Phenotype for Stressor‐Evoked Blood Pressure Reactivity. Journal of the American Heart Association, 6(9), e006053. https://doi.org/10.1161/JAHA.117.006053
Faskowitz, J., Esfahlani, F. Z., Jo, Y., Sporns, O., & Betzel, R. F. (2020). Edge-centric functional network representations of human cerebral cortex reveal overlapping system-level architecture. Nature Neuroscience, 23(12), 1644–1654. https://doi.org/10.1038/s41593-020-00719-y
DOI: 10.1184/r1/25939567.v1
title: Pittsburgh Imaging Project (PIP) Dataset

description:  The Pittsburgh Imaging Project (PIP) fMRI dataset was generated for the research publication Gianaros et al. (2017). Participants conducted interleaved trials of congruent and incongruent phases of the both the Stroop and Multi-Source Inference Tasks (MSIT) with 10 second fixation rest in between trials. There was a separate resting state scan collected from these participants where they simply stared at a fixed crosshair. 
<br>
 Initially this data was meant to be utilized as a stressor evoked task since the Stroop and MSIT tasks are adaptive, whereby higher accuracy scores in the incongruent phases led to shorter intervals between trials. The number of trials were matched to the congruent phases of the task. The data has been processed from functional connectivity matrices to edge time series (Faskowitz et al., 2020) co-fluctuations for the entire timescale of the fMRI task. 
<br>
 In our research, in the linked preprint below, this dataset was used to examine a network perspective of the brain. Cortical flexibility is shown to be paramount to the resolution of a number of tasks, both novel and habitual. During these instances of heightened cortical flexibility there is network change from integrative (more communication across specialized brain regions) to segregative (more communication within regions or hubs) states. We sought to examine whether the basal ganglia and cerebellum act as control states for initiating integration and segregation of cortical networks respectively. 
<br>
arXiv preprint:
https://arxiv.org/abs/2408.07977
<br>
References
Gianaros, P. J., Sheu, L. K., Uyar, F., Koushik, J., Jennings, J. R., Wager, T. D., Singh, A., & Verstynen, T. D. (2017). A Brain Phenotype for Stressor‐Evoked Blood Pressure Reactivity. Journal of the American Heart Association, 6(9), e006053. https://doi.org/10.1161/JAHA.117.006053
Faskowitz, J., Esfahlani, F. Z., Jo, Y., Sporns, O., & Betzel, R. F. (2020). Edge-centric functional network representations of human cerebral cortex reveal overlapping system-level architecture. Nature Neuroscience, 23(12), 1644–1654. https://doi.org/10.1038/s41593-020-00719-y
DOI: 10.15468/dl.vp5c33
title: Occurrence Download

description: A dataset containing 2449947453 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Animalia"
 ]
}

 The dataset includes 2449947453 records from 58525 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025925-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-75238
title: Redemption tidings, vol. 54, nos. 1-52, 5 Jan. - 28 Dec. 1978

description: [description english/roman)] Issued weekly. "The vital voice of pentecost today" -- subtitle (vol. 54, nos. 1-34). "The pentecostal voice of Assemblies of God" -- subtitle (vol. 54, nos. 35-52).
DOI: 10.15468/dl.tdy5ub
title: Occurrence Download

description: A dataset containing 488 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-78.39350381006341 -0.9957663756747848,-77.654409420652 -0.9957663756747848,-77.654409420652 -0.2566719862633673,-78.39350381006341 -0.2566719862633673,-78.39350381006341 -0.9957663756747848))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Spizaetus isidori (Des Murs, 1845)",
 "Year 1912-2022"
 ]
}

 The dataset includes 488 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108075-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qhomkt
title: Occurrence Download

description: A dataset containing 519 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Protea cynaroides (L.) L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 519 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003205-190307172214381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.