cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13059052.v1
title: Additional file 1 of A practice improvement package at scale to improve management of birth asphyxia in Rwanda: a before-after mixed methods evaluation

description: Additional file 1: Supplementary Material 1. Final mentorship data level 1. Mentorship scores of mentees over the course of mentorship visits, throughout project implementation.
DOI: 10.6084/m9.figshare.13059095
title: Additional file 1 of A scoping review of physical activity and screen time guidelines for use in Outside School Hours Care

description: Additional file 1.
DOI: 10.6084/m9.figshare.13059095.v1
title: Additional file 1 of A scoping review of physical activity and screen time guidelines for use in Outside School Hours Care

description: Additional file 1.
DOI: 10.6084/m9.figshare.13059122.v1
title: Additional file 3 of Vibrionaceae core, shell and cloud genes are non-randomly distributed on Chr 1: An hypothesis that links the genomic location of genes with their intracellular placement

description: Additional file 3: Table S2. Distribution and percent of total number of CDSs per chromosome of core, softcore, shell and cloud genes on «upper half» and «lower half» of Chr 1 and Chr 2 of 11 representative Vibrionaceae genomes.
DOI: 10.6084/m9.figshare.13059122
title: Additional file 3 of Vibrionaceae core, shell and cloud genes are non-randomly distributed on Chr 1: An hypothesis that links the genomic location of genes with their intracellular placement

description: Additional file 3: Table S2. Distribution and percent of total number of CDSs per chromosome of core, softcore, shell and cloud genes on «upper half» and «lower half» of Chr 1 and Chr 2 of 11 representative Vibrionaceae genomes.
DOI: 10.6084/m9.figshare.13059116
title: Additional file 1 of Vibrionaceae core, shell and cloud genes are non-randomly distributed on Chr 1: An hypothesis that links the genomic location of genes with their intracellular placement

description: Additional file 1: Table S1. Complete list of the 124 Vibrionaceae genomes used in this study.
DOI: 10.6084/m9.figshare.13059116.v1
title: Additional file 1 of Vibrionaceae core, shell and cloud genes are non-randomly distributed on Chr 1: An hypothesis that links the genomic location of genes with their intracellular placement

description: Additional file 1: Table S1. Complete list of the 124 Vibrionaceae genomes used in this study.
DOI: 10.6084/m9.figshare.13059125.v1
title: Additional file 4 of Vibrionaceae core, shell and cloud genes are non-randomly distributed on Chr 1: An hypothesis that links the genomic location of genes with their intracellular placement

description: Additional file 4: Table S3. Statistical analysis of gene distribution (chi-squared test) and gene expression (Wilcoxon signed-rank test) between “upper half” and “lower half” of Chr 1 and Chr 2.
DOI: 10.6084/m9.figshare.13059125
title: Additional file 4 of Vibrionaceae core, shell and cloud genes are non-randomly distributed on Chr 1: An hypothesis that links the genomic location of genes with their intracellular placement

description: Additional file 4: Table S3. Statistical analysis of gene distribution (chi-squared test) and gene expression (Wilcoxon signed-rank test) between “upper half” and “lower half” of Chr 1 and Chr 2.
DOI: 10.6084/m9.figshare.13059140.v1
title: Additional file 3 of Development and implementation of a Telenephrology dashboard for active surveillance of kidney disease: a quality improvement project

description: Additional file 3. Raw Data.
DOI: 10.6084/m9.figshare.13059140
title: Additional file 3 of Development and implementation of a Telenephrology dashboard for active surveillance of kidney disease: a quality improvement project

description: Additional file 3. Raw Data.
DOI: 10.6084/m9.figshare.13059148.v1
title: Additional file 1 of Lacrimal sac bacteriology and susceptibility pattern in infants with congenital nasolacrimal duct obstruction in the 1st year of life: a cross-sectional study

description: Additional file 1.
DOI: 10.6084/m9.figshare.13059148
title: Additional file 1 of Lacrimal sac bacteriology and susceptibility pattern in infants with congenital nasolacrimal duct obstruction in the 1st year of life: a cross-sectional study

description: Additional file 1.
DOI: 10.6084/m9.figshare.13059211
title: Additional file 1 of Decomposition of years of life lost due to premature death (YLL): a method for spatial and temporal comparative assessment

description: Additional file 1. - Guideline to run the code. Figure 1: .py file
DOI: 10.6084/m9.figshare.13059220.v1
title: Additional file 3 of Decomposition of years of life lost due to premature death (YLL): a method for spatial and temporal comparative assessment

description: Additional file 3. Table 1 Excel file contains data and calculation of Table 1. It describes method for temporal decomposition of YLL between 2000 to 2016 in Mozambique for communicable, neonatal, maternal and nutritional deaths. Additional File 3 - Table 2: Excel file contains data and calculation of Table 2. It describes method for spatial decomposition of YLL between Indian and its State in 2016 for tuberculosis burden.. Additional File 3 - yll_decomposition: Python code to carry out decomposition. Additional File 3 - input data for Table 1 - POP: Input files to python code . Additional File 3 - input data for Table 1 – Deaths: Input files to python code. Additional File 3 - input data for Table 2 - POP: Input files to python code. Additional File 3 - input data for Table 2 – Deaths: Input files to python code. Additional File 3 - Guideline to run the code
DOI: 10.6084/m9.figshare.13059217
title: Additional file 2 of Decomposition of years of life lost due to premature death (YLL): a method for spatial and temporal comparative assessment

description: Additional file 2. Fig. 2: Excel sheet containing description, calculations and data to reproduce Fig. 2. Additional File 2 -Fig. 2: Python code for generation of Fig. 2. Additional File 2 -Deaths: Python code input files. Additional File 2 -POP: Python code input files. Additional File 2 Guideline to run the code
DOI: 10.6084/m9.figshare.13059211.v1
title: Additional file 1 of Decomposition of years of life lost due to premature death (YLL): a method for spatial and temporal comparative assessment

description: Additional file 1. - Guideline to run the code. Figure 1: .py file
DOI: 10.6084/m9.figshare.13059217.v1
title: Additional file 2 of Decomposition of years of life lost due to premature death (YLL): a method for spatial and temporal comparative assessment

description: Additional file 2. Fig. 2: Excel sheet containing description, calculations and data to reproduce Fig. 2. Additional File 2 -Fig. 2: Python code for generation of Fig. 2. Additional File 2 -Deaths: Python code input files. Additional File 2 -POP: Python code input files. Additional File 2 Guideline to run the code
DOI: 10.6084/m9.figshare.13059220
title: Additional file 3 of Decomposition of years of life lost due to premature death (YLL): a method for spatial and temporal comparative assessment

description: Additional file 3. Table 1 Excel file contains data and calculation of Table 1. It describes method for temporal decomposition of YLL between 2000 to 2016 in Mozambique for communicable, neonatal, maternal and nutritional deaths. Additional File 3 - Table 2: Excel file contains data and calculation of Table 2. It describes method for spatial decomposition of YLL between Indian and its State in 2016 for tuberculosis burden.. Additional File 3 - yll_decomposition: Python code to carry out decomposition. Additional File 3 - input data for Table 1 - POP: Input files to python code . Additional File 3 - input data for Table 1 – Deaths: Input files to python code. Additional File 3 - input data for Table 2 - POP: Input files to python code. Additional File 3 - input data for Table 2 – Deaths: Input files to python code. Additional File 3 - Guideline to run the code
DOI: 10.6084/m9.figshare.13059284
title: Additional file 1 of Alternative graphical displays for the monitoring of epidemic outbreaks, with application to COVID-19 mortality

description: Additional file 1.
DOI: 10.6084/m9.figshare.13059284.v1
title: Additional file 1 of Alternative graphical displays for the monitoring of epidemic outbreaks, with application to COVID-19 mortality

description: Additional file 1.
DOI: 10.6084/m9.figshare.13059298
title: Additional file 5 of A mixed methods systematic review of the effects of patient online self-diagnosing in the ‘smart-phone society’ on the healthcare professional-patient relationship and medical authority

description: Additional file 5.
DOI: 10.6084/m9.figshare.13059298.v1
title: Additional file 5 of A mixed methods systematic review of the effects of patient online self-diagnosing in the ‘smart-phone society’ on the healthcare professional-patient relationship and medical authority

description: Additional file 5.
DOI: 10.6084/m9.figshare.13059388
title: Additional file 1 of Transcriptional responses in developing lesions of European common ash (Fraxinus excelsior) reveal genes responding to infection by Hymenoscyphus fraxineus

description: Additional file 1. Mapping results against the F. excelsior genome from the RNAseq libraries generated from the common garden experiment
DOI: 10.6084/m9.figshare.13059397
title: Additional file 4 of Transcriptional responses in developing lesions of European common ash (Fraxinus excelsior) reveal genes responding to infection by Hymenoscyphus fraxineus

description: Additional file 4. Read mapping results and DEGs in the greenhouse experiment
DOI: 10.6084/m9.figshare.13059397.v1
title: Additional file 4 of Transcriptional responses in developing lesions of European common ash (Fraxinus excelsior) reveal genes responding to infection by Hymenoscyphus fraxineus

description: Additional file 4. Read mapping results and DEGs in the greenhouse experiment
DOI: 10.6084/m9.figshare.13059400
title: Additional file 5 of Transcriptional responses in developing lesions of European common ash (Fraxinus excelsior) reveal genes responding to infection by Hymenoscyphus fraxineus

description: Additional file 5. Concordant and discordantly expressed DEGs between the common garden and green house experiments
DOI: 10.6084/m9.figshare.13059388.v1
title: Additional file 1 of Transcriptional responses in developing lesions of European common ash (Fraxinus excelsior) reveal genes responding to infection by Hymenoscyphus fraxineus

description: Additional file 1. Mapping results against the F. excelsior genome from the RNAseq libraries generated from the common garden experiment
DOI: 10.6084/m9.figshare.13059394
title: Additional file 3 of Transcriptional responses in developing lesions of European common ash (Fraxinus excelsior) reveal genes responding to infection by Hymenoscyphus fraxineus

description: Additional file 3. Annotation, cluster affiliation and relative expression levels of all DEGs in the common garden experiment
DOI: 10.6084/m9.figshare.13059400.v1
title: Additional file 5 of Transcriptional responses in developing lesions of European common ash (Fraxinus excelsior) reveal genes responding to infection by Hymenoscyphus fraxineus

description: Additional file 5. Concordant and discordantly expressed DEGs between the common garden and green house experiments
DOI: 10.6084/m9.figshare.13059394.v1
title: Additional file 3 of Transcriptional responses in developing lesions of European common ash (Fraxinus excelsior) reveal genes responding to infection by Hymenoscyphus fraxineus

description: Additional file 3. Annotation, cluster affiliation and relative expression levels of all DEGs in the common garden experiment
DOI: 10.6084/m9.figshare.13059403
title: Additional file 6 of Transcriptional responses in developing lesions of European common ash (Fraxinus excelsior) reveal genes responding to infection by Hymenoscyphus fraxineus

description: Additional file 6. The FASTA sequences of all DEGs detected in both studies
DOI: 10.6084/m9.figshare.13059403.v1
title: Additional file 6 of Transcriptional responses in developing lesions of European common ash (Fraxinus excelsior) reveal genes responding to infection by Hymenoscyphus fraxineus

description: Additional file 6. The FASTA sequences of all DEGs detected in both studies
DOI: 10.6084/m9.figshare.13059412.v1
title: Additional file 1 of Distinctive gene and protein characteristics of extremely piezophilic Colwellia

description: Additional file 1. (XLS 38 kb)
DOI: 10.6084/m9.figshare.13059412
title: Additional file 1 of Distinctive gene and protein characteristics of extremely piezophilic Colwellia

description: Additional file 1. (XLS 38 kb)
DOI: 10.6084/m9.figshare.13059436
title: Additional file 1 of Self-reported disrespect and abuse by nurses and midwives during childbirth in Tanzania: a cross-sectional study

description: Additional file 1.
DOI: 10.6084/m9.figshare.13059436.v1
title: Additional file 1 of Self-reported disrespect and abuse by nurses and midwives during childbirth in Tanzania: a cross-sectional study

description: Additional file 1.
DOI: 10.6084/m9.figshare.13059448.v1
title: Additional file 1 of pH-dependent transcriptional profile changes in iron-deficient Arabidopsis roots

description: Additional file 1: Supplemental Table 1. High-pH DEGs.
DOI: 10.6084/m9.figshare.13059451
title: Additional file 2 of pH-dependent transcriptional profile changes in iron-deficient Arabidopsis roots

description: Additional file 2: Supplemental Table 2. Common DEGs between high-pH and optimal-pH datasets.
DOI: 10.6084/m9.figshare.13059451.v1
title: Additional file 2 of pH-dependent transcriptional profile changes in iron-deficient Arabidopsis roots

description: Additional file 2: Supplemental Table 2. Common DEGs between high-pH and optimal-pH datasets.
DOI: 10.6084/m9.figshare.13059448
title: Additional file 1 of pH-dependent transcriptional profile changes in iron-deficient Arabidopsis roots

description: Additional file 1: Supplemental Table 1. High-pH DEGs.
DOI: 10.21227/xzt6-p944
title: Waterloo Streaming QoE Database 3

description: The dynamic adaptive streaming over HTTP provides an inter-operable solution to overcome the volatile network conditions, but its complex characteristic brings new challenges to objective video quality-of-experience (QoE) measurement. To test the generalizability and to facilitate the wide usage of QoE measurement techniques in real-world applications, we establish a new database named Waterloo Streaming QoE Database III (SQoE-III). Unlike existing databases constructed with hand-crafted test sequences, the SQoE-III database, so far the largest and most realistic of its kind, consists of a total of 450 streaming videos created from diverse source content and diverse distortion patterns, with six adaptation algorithms of diverse characteristics under 13 representative network conditions. All streaming videos are assessed by 34 subjects, and a comprehensive evaluation is conducted on the performance of 15 objective QoE models from four categories with regards to their efficacy in predicting subjective QoE. Detailed correlation analysis and statistical hypothesis testing are carried out. The results of this paper shed light on the future development of adaptive bitrate streaming algorithm and video QoE monitoring system.
DOI: 10.6084/m9.figshare.13059503.v1
title: Additional file 1 of Trastuzumab-induced upregulation of a protein set in extracellular vesicles emitted by ErbB2-positive breast cancer cells correlates with their trastuzumab sensitivity

description: Additional file 1: Supplementary Table 1. Liquid chromatography-tandem mass spectrometry analysis of proteins in extracellular vesicles emitted by BT-474 or BT-474TR cells before and after trastuzumab treatment. BT-474 or BT-474TR cells were treated (+) or not (−) with 5 μg/ml trastuzumab (TZ) in 3D culture for 72 h. Extracellular vesicles were isolated from the conditioned media by ultracentrifugation. EV proteins were digested by trypsin and analyzed by LC-MS/MS. The raw data were matched against the latest human SwissProt protein database by use of the Mascot search engine. Label-free TIC quantification was further performed by Scaffold Q+ software. Signal intensities for each of the indicated EV proteins are expressed in TIC units (protein threshold &gt;95.0%, peptide threshold &gt;95.0%, a minimum of two unique peptides identified per protein). The data for five independent experiments are shown.
DOI: 10.6084/m9.figshare.13059517.v1
title: Additional file 4 of Offering mental health first aid to a person after a potentially traumatic event: a Delphi study to redevelop the 2008 guidelines

description: Additional file 4. Endorsed and rejected items. Tables presenting all statements that were endorsed as guidelines items and all statements that were rejected. Also presents a comparison between the 2008 study and the 2019 study in terms of statements supported and rejected.
DOI: 10.21227/g4kg-2n47
title: Waterloo Streaming QoE Database 3

description: The dynamic adaptive streaming over HTTP provides an inter-operable solution to overcome the volatile network conditions, but its complex characteristic brings new challenges to objective video quality-of-experience (QoE) measurement. To test the generalizability and to facilitate the wide usage of QoE measurement techniques in real-world applications, we establish a new database named Waterloo Streaming QoE Database III (SQoE-III). Unlike existing databases constructed with hand-crafted test sequences, the SQoE-III database, so far the largest and most realistic of its kind, consists of a total of 450 streaming videos created from diverse source content and diverse distortion patterns, with six adaptation algorithms of diverse characteristics under 13 representative network conditions. All streaming videos are assessed by 34 subjects, and a comprehensive evaluation is conducted on the performance of 15 objective QoE models from four categories with regards to their efficacy in predicting subjective QoE. Detailed correlation analysis and statistical hypothesis testing are carried out. The results of this paper shed light on the future development of adaptive bitrate streaming algorithm and video QoE monitoring system.
DOI: 10.6084/m9.figshare.13059503
title: Additional file 1 of Trastuzumab-induced upregulation of a protein set in extracellular vesicles emitted by ErbB2-positive breast cancer cells correlates with their trastuzumab sensitivity

description: Additional file 1: Supplementary Table 1. Liquid chromatography-tandem mass spectrometry analysis of proteins in extracellular vesicles emitted by BT-474 or BT-474TR cells before and after trastuzumab treatment. BT-474 or BT-474TR cells were treated (+) or not (−) with 5 μg/ml trastuzumab (TZ) in 3D culture for 72 h. Extracellular vesicles were isolated from the conditioned media by ultracentrifugation. EV proteins were digested by trypsin and analyzed by LC-MS/MS. The raw data were matched against the latest human SwissProt protein database by use of the Mascot search engine. Label-free TIC quantification was further performed by Scaffold Q+ software. Signal intensities for each of the indicated EV proteins are expressed in TIC units (protein threshold &gt;95.0%, peptide threshold &gt;95.0%, a minimum of two unique peptides identified per protein). The data for five independent experiments are shown.
DOI: 10.6084/m9.figshare.13059517
title: Additional file 4 of Offering mental health first aid to a person after a potentially traumatic event: a Delphi study to redevelop the 2008 guidelines

description: Additional file 4. Endorsed and rejected items. Tables presenting all statements that were endorsed as guidelines items and all statements that were rejected. Also presents a comparison between the 2008 study and the 2019 study in terms of statements supported and rejected.
DOI: 10.6084/m9.figshare.13059587.v1
title: Additional file 5 of Pre-purification of diatom pigment protein complexes provides insight into the heterogeneity of FCP complexes

description: Additional file 5. Detailed information for the analysis of the 18 and 21 kDa FCP bands of the different AEC fractions by mass spectrometry. In contrast to Table 1 in the Results section, which only depicts the FCP proteins that were determined with a minimum of two polypeptides and a protein coverage larger than 1000, Additional file 5 lists all the FCP proteins that were detected in the MS analysis. In addition, this file provides the most important PLGS protein and peptide data for all detected proteins.
DOI: 10.6084/m9.figshare.13059590
title: Additional file 6 of Pre-purification of diatom pigment protein complexes provides insight into the heterogeneity of FCP complexes

description: Additional file 6. Detailed information for the analysis of the protein composition of the FCPs and protein subunits of the PSII and PSI core complexes of the different AEC fractions by mass spectrometry. In contrast to Table 2 in the Results section, which only depicts the FCP, PSI and PSII proteins that were determined with a minimum of two polypeptides and a protein coverage larger than 1000, Additional file 6 lists all the FCP, PSI and PSII proteins that were detected in the MS analysis. In addition, this table provides the most important PLGS protein and peptide data for all detected proteins.
DOI: 10.6084/m9.figshare.13059587
title: Additional file 5 of Pre-purification of diatom pigment protein complexes provides insight into the heterogeneity of FCP complexes

description: Additional file 5. Detailed information for the analysis of the 18 and 21 kDa FCP bands of the different AEC fractions by mass spectrometry. In contrast to Table 1 in the Results section, which only depicts the FCP proteins that were determined with a minimum of two polypeptides and a protein coverage larger than 1000, Additional file 5 lists all the FCP proteins that were detected in the MS analysis. In addition, this file provides the most important PLGS protein and peptide data for all detected proteins.
DOI: 10.6084/m9.figshare.13059590.v1
title: Additional file 6 of Pre-purification of diatom pigment protein complexes provides insight into the heterogeneity of FCP complexes

description: Additional file 6. Detailed information for the analysis of the protein composition of the FCPs and protein subunits of the PSII and PSI core complexes of the different AEC fractions by mass spectrometry. In contrast to Table 2 in the Results section, which only depicts the FCP, PSI and PSII proteins that were determined with a minimum of two polypeptides and a protein coverage larger than 1000, Additional file 6 lists all the FCP, PSI and PSII proteins that were detected in the MS analysis. In addition, this table provides the most important PLGS protein and peptide data for all detected proteins.
DOI: 10.6084/m9.figshare.13059611
title: Additional file 1 of Chlorhexidine bathing of the exposed circuits in extracorporeal membrane oxygenation: an uncontrolled before-and-after study

description: Additional file 1. Study protocol.
DOI: 10.6084/m9.figshare.13059611.v1
title: Additional file 1 of Chlorhexidine bathing of the exposed circuits in extracorporeal membrane oxygenation: an uncontrolled before-and-after study

description: Additional file 1. Study protocol.
DOI: 10.6084/m9.figshare.13059631.v1
title: Additional file 2 of Expression of in vivo biotinylated recombinant antigens SAG1 and SAG2A from Toxoplasma gondii for improved seroepidemiological bead-based multiplex assays

description: Additional file 2. Sequence S1.
DOI: 10.6084/m9.figshare.13059634.v1
title: Additional file 3 of Expression of in vivo biotinylated recombinant antigens SAG1 and SAG2A from Toxoplasma gondii for improved seroepidemiological bead-based multiplex assays

description: Additional file 3. Sequence S2.
DOI: 10.6084/m9.figshare.13059640
title: Additional file 5 of Expression of in vivo biotinylated recombinant antigens SAG1 and SAG2A from Toxoplasma gondii for improved seroepidemiological bead-based multiplex assays

description: Additional file 5. Sequence S3.