cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.60712/si-id408757.1
title: StrainInfo SI-ID 408757.1

description: StrainInfo dataset 408757 about a strain of Stachybotrys chartarum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408758.1
title: StrainInfo SI-ID 408758.1

description: StrainInfo dataset 408758 about a strain of Moraxella osloensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408843.1
title: StrainInfo SI-ID 408843.1

description: StrainInfo dataset 408843 about a strain of Haemophilus influenzae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.x8435r
title: Occurrence Download

description: A dataset containing 3397 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Wahlenbergia marginata (Thunb.) A.DC.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3397 records from 131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086406-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id408844.1
title: StrainInfo SI-ID 408844.1

description: StrainInfo dataset 408844 about a strain of Streptococcus pneumoniae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408845.1
title: StrainInfo SI-ID 408845.1

description: StrainInfo dataset 408845 about a strain of Bradyrhizobium. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408846.1
title: StrainInfo SI-ID 408846.1

description: StrainInfo dataset 408846 about a strain of Granulicatella adiacens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408940.1
title: StrainInfo SI-ID 408940.1

description: StrainInfo dataset 408940 about a strain of Variovorax ginsengisoli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408941.1
title: StrainInfo SI-ID 408941.1

description: StrainInfo dataset 408941 about a strain of Roseomonas gilardii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408942.1
title: StrainInfo SI-ID 408942.1

description: StrainInfo dataset 408942 about a strain of Bradyrhizobium. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408943.1
title: StrainInfo SI-ID 408943.1

description: StrainInfo dataset 408943 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408759.1
title: StrainInfo SI-ID 408759.1

description: StrainInfo dataset 408759 about a strain of Corynebacterium pyruviciproducens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408760.1
title: StrainInfo SI-ID 408760.1

description: StrainInfo dataset 408760 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408761.1
title: StrainInfo SI-ID 408761.1

description: StrainInfo dataset 408761 about a strain of Streptococcus downii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408847.1
title: StrainInfo SI-ID 408847.1

description: StrainInfo dataset 408847 about a strain of Stenotrophomonas acidaminiphila. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408848.1
title: StrainInfo SI-ID 408848.1

description: StrainInfo dataset 408848 about a strain of Citrobacter murliniae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408849.1
title: StrainInfo SI-ID 408849.1

description: StrainInfo dataset 408849 about a strain of Streptococcus pseudopneumoniae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408944.1
title: StrainInfo SI-ID 408944.1

description: StrainInfo dataset 408944 about a strain of Nakaseomyces glabratus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408945.1
title: StrainInfo SI-ID 408945.1

description: StrainInfo dataset 408945 about a strain of Cronobacter sakazakii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408946.1
title: StrainInfo SI-ID 408946.1

description: StrainInfo dataset 408946 about a strain of Basfia succiniciproducens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408762.1
title: StrainInfo SI-ID 408762.1

description: StrainInfo dataset 408762 about a strain of Aerococcus urinae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.zm0fwu
title: Occurrence Download

description: A dataset containing 34486 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Netta rufina (Pallas, 1773)"
 ]
}

 The dataset includes 34486 records from 209 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002265-170925132151566/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id408763.1
title: StrainInfo SI-ID 408763.1

description: StrainInfo dataset 408763 about a strain of Ureibacillus chungkukjangi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408764.1
title: StrainInfo SI-ID 408764.1

description: StrainInfo dataset 408764 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408765.1
title: StrainInfo SI-ID 408765.1

description: StrainInfo dataset 408765 about a strain of Staphylococcus aureus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408850.1
title: StrainInfo SI-ID 408850.1

description: StrainInfo dataset 408850 about a strain of Pseudomonas otitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408851.1
title: StrainInfo SI-ID 408851.1

description: StrainInfo dataset 408851 about a strain of Alternaria. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408852.1
title: StrainInfo SI-ID 408852.1

description: StrainInfo dataset 408852 about a strain of Kingella kingae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408853.1
title: StrainInfo SI-ID 408853.1

description: StrainInfo dataset 408853 about a strain of Actinotignum schaalii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408947.1
title: StrainInfo SI-ID 408947.1

description: StrainInfo dataset 408947 about a strain of Victivallis vadensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408948.1
title: StrainInfo SI-ID 408948.1

description: StrainInfo dataset 408948 about a strain of Staphylococcus pseudintermedius. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408949.1
title: StrainInfo SI-ID 408949.1

description: StrainInfo dataset 408949 about a strain of Microbacterium ginsengisoli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408950.1
title: StrainInfo SI-ID 408950.1

description: StrainInfo dataset 408950 about a strain of Propionimicrobium lymphophilum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408951.1
title: StrainInfo SI-ID 408951.1

description: StrainInfo dataset 408951 about a strain of Scandinavium manionii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408766.1
title: StrainInfo SI-ID 408766.1

description: StrainInfo dataset 408766 about a strain of Candida albicans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408767.1
title: StrainInfo SI-ID 408767.1

description: StrainInfo dataset 408767 about a strain of Bulleidia extructa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408768.1
title: StrainInfo SI-ID 408768.1

description: StrainInfo dataset 408768 about a strain of Kytococcus schroeteri. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/xmpc2v
title: Collection Denise LAMOURE

description: Denise Lamoure, épouse Dailly, (1928-2012) fut professeure et chercheuse à l'Université Lyon 1 dans le laboratoire de biologie végétale dirigé par Robert Kühner. Elle étudia principalement les champignons de la zone alpine, parc national de la Vanoise, et compléta ses recherches par des missions dans les zones boréales. Elle organisa, en 1992 à Lanslebourg (Savoie) un symposium de mycologie alpine. Son fungarium, conservé à l'Herbier LY, contient environ 3500 spécimens (dont une trentaine de types). Denise Lamoure publia de nombreuses fois sur les Agaricales et la systématique alpine (genres Cortinarius, Clitocybe, Lactarius, ...)
DOI: 10.60712/si-id408769.1
title: StrainInfo SI-ID 408769.1

description: StrainInfo dataset 408769 about a strain of Phytobacter diazotrophicus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408854.1
title: StrainInfo SI-ID 408854.1

description: StrainInfo dataset 408854 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408855.1
title: StrainInfo SI-ID 408855.1

description: StrainInfo dataset 408855 about a strain of Pandoraea anhela. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408856.1
title: StrainInfo SI-ID 408856.1

description: StrainInfo dataset 408856 about a strain of Corynebacterium thomssenii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408952.1
title: StrainInfo SI-ID 408952.1

description: StrainInfo dataset 408952 about a strain of Achromobacter xylosoxidans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408953.1
title: StrainInfo SI-ID 408953.1

description: StrainInfo dataset 408953 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408954.1
title: StrainInfo SI-ID 408954.1

description: StrainInfo dataset 408954 about a strain of Microbacterium testaceum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408770.1
title: StrainInfo SI-ID 408770.1

description: StrainInfo dataset 408770 about a strain of Streptococcus oralis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408771.1
title: StrainInfo SI-ID 408771.1

description: StrainInfo dataset 408771 about a strain of Bacillus subtilis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.ahxyvq
title: Occurrence Download

description: A dataset containing 1840 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Veronica elliptica G.Forst., Veronica elliptica var. crassifolia (Cockayne & Allan))"
 ]
}

 The dataset includes 1840 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086408-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.5750052
title: Transcriptomic profiling of clobetasol propionate-induced immunosuppression in challenged zebrafish embryos

description: We have conducted an immune challenge experiment on 48h zebrafish embryos, which were previously treated with the immunosuppressive drug clobetasol propionate (CP). The embryos' immune system was challenged by injection of a mix of different pathogen associated molecular patterns (PAMPs). RNA sequencing was performed in order to detect altered molcular expression levels induced by CP, PAMPs and a combination of both. The data was published in Essfeld et al. 2022.

The uploaded data archive (7-zip compressed) consists of three major data types:1. MultiQC reports from raw RNA-Seq read processing and QC (50bp SR)2. Result tables from differential gene expression analysis (DGEA) with DESEq23. Result tables from Overrespresentation Analysis (ORA) with clusterProfiler

Gene count normalization and DGEA was conducted with DESeq2 (Love et al., 2014, DOI 10.1186/s13059-014-0550-8) . Three biological replicates per condition, exposure treatments were compared with respect to the control group in a pairwise fashion, applying Wald’s t-test. P values were corrected for multiple testing with independent hypothesis weighting (IHW) (Ignatiadis et al., 2016, DOI 10.1038/nmeth.3885 ) after Benjamini-Hochberg (BH). To improve the signal to statistical noise ratio, the obtained log2-fold change (lfc) values were shrunk with the apeglm method described by Zhu and colleagues (2019, DOI 10.1093/bioinformatics/bty895 ) before DGEA result tables were subjected to ORA via clusterProfiler (Yu et al., 2012, DOI 10.1089/omi.2011.0118).

The ArrayExpress accession number E-MTAB-11092, provides access to the raw and DESeq2 normalized gene count matrices upon which these analysis were performed. Genes were annotated through the biomaRt package (Durinck et al., 2009, DOI 10.1038/nprot.2009.97 ) in R (R Core Team 2021).
DOI: 10.5281/zenodo.5750053
title: Transcriptomic profiling of clobetasol propionate-induced immunosuppression in challenged zebrafish embryos

description: We have conducted an immune challenge experiment on 48h zebrafish embryos, which were previously treated with the immunosuppressive drug clobetasol propionate (CP). The embryos' immune system was challenged by injection of a mix of different pathogen associated molecular patterns (PAMPs). RNA sequencing was performed in order to detect altered molcular expression levels induced by CP, PAMPs and a combination of both. The data was published in Essfeld et al. 2022.

The uploaded data archive (7-zip compressed) consists of three major data types:1. MultiQC reports from raw RNA-Seq read processing and QC (50bp SR)2. Result tables from differential gene expression analysis (DGEA) with DESEq23. Result tables from Overrespresentation Analysis (ORA) with clusterProfiler

Gene count normalization and DGEA was conducted with DESeq2 (Love et al., 2014, DOI 10.1186/s13059-014-0550-8) . Three biological replicates per condition, exposure treatments were compared with respect to the control group in a pairwise fashion, applying Wald’s t-test. P values were corrected for multiple testing with independent hypothesis weighting (IHW) (Ignatiadis et al., 2016, DOI 10.1038/nmeth.3885 ) after Benjamini-Hochberg (BH). To improve the signal to statistical noise ratio, the obtained log2-fold change (lfc) values were shrunk with the apeglm method described by Zhu and colleagues (2019, DOI 10.1093/bioinformatics/bty895 ) before DGEA result tables were subjected to ORA via clusterProfiler (Yu et al., 2012, DOI 10.1089/omi.2011.0118).

The ArrayExpress accession number E-MTAB-11092, provides access to the raw and DESeq2 normalized gene count matrices upon which these analysis were performed. Genes were annotated through the biomaRt package (Durinck et al., 2009, DOI 10.1038/nprot.2009.97 ) in R (R Core Team 2021).
DOI: 10.60712/si-id408772.1
title: StrainInfo SI-ID 408772.1

description: StrainInfo dataset 408772 about a strain of Paracoccus yeei. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408773.1
title: StrainInfo SI-ID 408773.1

description: StrainInfo dataset 408773 about a strain of Stenotrophomonas. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408857.1
title: StrainInfo SI-ID 408857.1

description: StrainInfo dataset 408857 about a strain of Escherichia coli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408858.1
title: StrainInfo SI-ID 408858.1

description: StrainInfo dataset 408858 about a strain of Indibacter alkaliphilus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id408859.1
title: StrainInfo SI-ID 408859.1

description: StrainInfo dataset 408859 about a strain of Streptococcus devriesei. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.