cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3600290_d8
title: Additional file 7: Table S6. of Gene expression profile indicates involvement of NO in Camellia sinensis pollen tube growth at low temperature

description: GO classification of DEGs identified from the comparison between pollen tubes exposed to 4Â Â°C (LT) and pollen tubes treated with NO donor (NO). (XLS 59 kb)
DOI: 10.6084/m9.figshare.c.3600299_d5
title: MOESM4 of Differential urinary glycoproteome analysis of type 2 diabetic nephropathy using 2D-LCâ  MS/MS and iTRAQ quantification

description: Additional file 4. Differential proteins in normalbuminuria, microalbuminuria, macroalbuminuria. The Cluster classification of each proteins were shown.
DOI: 10.6084/m9.figshare.c.3600290_d6
title: Additional file 4: Table S3. of Gene expression profile indicates involvement of NO in Camellia sinensis pollen tube growth at low temperature

description: DEGs identified from the comparison between 4 °C- (CsPT-LT) and NO-treated (CsPT-NO) pollen tubes. All of the samples were replicated three times. LT and NO FPKM: fragments per kb per million reads for each unigene in the LT and NO libraries, respectively. The log2Ratio (LT/NO): ratio between the FPKM of LT and CK. The absolute values of log2Ratio &gt; 1 and probability &gt; 0.7 were used as threshold for assigning significance. Annotation of DEGs against NR, NT, Swiss-Prot protein, KEGG, COG and GO were all reported in the tables. “-”: no hit. (XLS 451 kb)
DOI: 10.6084/m9.figshare.c.3600299_d4
title: MOESM6 of Differential urinary glycoproteome analysis of type 2 diabetic nephropathy using 2D-LCâ  MS/MS and iTRAQ quantification

description: Additional file 6. The differential protein lists in DM and DN from previous studies.
DOI: 10.6084/m9.figshare.c.3600299_d3
title: MOESM5 of Differential urinary glycoproteome analysis of type 2 diabetic nephropathy using 2D-LCâ  MS/MS and iTRAQ quantification

description: Additional file 5. Detail protein list classified by biological functions by IPA in normalbuminuria, microalbuminuria and macroalbuminuria.
DOI: 10.6084/m9.figshare.c.3600290_d5
title: Additional file 3: Table S2. of Gene expression profile indicates involvement of NO in Camellia sinensis pollen tube growth at low temperature

description: DEGs identified from the comparison between control (CsPT-CK) and NO-treated (CsPT-NO) pollen tubes. All of the samples were replicated three times. CK and NO FPKM: fragments per kb per million reads for each unigene in the CK and NO libraries, respectively. The log2Ratio (NO/CK): ratio between the FPKM of NO and CK. The absolute values of log2Ratio &gt; 1 and probability &gt; 0.7 were used as threshold for assigning significance. Annotation of DEGs against NR, NT, Swiss-Prot protein, KEGG, COG and GO were all reported in the tables. “-”: no hit. (XLS 250 kb)
DOI: 10.6084/m9.figshare.c.3600299_d2
title: MOESM1 of Differential urinary glycoproteome analysis of type 2 diabetic nephropathy using 2D-LCâ  MS/MS and iTRAQ quantification

description: Additional file 1. Detailed clinical characteristics of normal control, normalbuminuric, microalbuminuric and macroalbuminuric patients.
DOI: 10.6084/m9.figshare.c.3600299_d1
title: MOESM3 of Differential urinary glycoproteome analysis of type 2 diabetic nephropathy using 2D-LCâ  MS/MS and iTRAQ quantification

description: Additional file 3. iTRAQ Quantitative protein and peptide list of urinary glycoproteome during the progression of DN.
DOI: 10.6084/m9.figshare.c.3600044_d10
title: Additional file 7: of The contribution of transposable elements to size variations between four teleost genomes

description: TE sequence 1: new repeats identified in zebrafish. (FAS 390Â kb)
DOI: 10.6084/m9.figshare.c.3600044_d5
title: Additional file 10: of The contribution of transposable elements to size variations between four teleost genomes

description: TE sequence 4: new repeats identified in tetraodon. (FAS 97Â kb)
DOI: 10.6084/m9.figshare.c.3600044_d4
title: Additional file 9: of The contribution of transposable elements to size variations between four teleost genomes

description: TE sequence 3: new repeats identified in stickleback. (FAS 357Â kb)
DOI: 10.6084/m9.figshare.c.3600032_d2
title: Additional file 2: of Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle

description: Variant effect predictor results. Detailed results from the variant effect predictor (VEP) analyses applied to the CPC98 aurochs and modern animal SNPs and indels. (XLSX 114 kb)
DOI: 10.6084/m9.figshare.c.3600044_d1
title: Additional file 8: of The contribution of transposable elements to size variations between four teleost genomes

description: TE sequence 2: new repeats identified in medaka. (FAS 376Â kb)
DOI: 10.6084/m9.figshare.c.3599249_d2
title: Additional file 3: Dataset 1. of Mapping H4K20me3 onto the chromatin landscape of senescent cells indicates a function in control of cell senescence and tumor suppression through preservation of genetic and epigenetic stability

description: Ranked list of the 500 genes containing the greatest H4K20me3 enrichment in RS cells. Dataset 2. Ranked list of the 500 genes containing the greatest H4K20me3 enrichment in OIS cells. (XLS 109 kb)
DOI: 10.15468/dl.vrwkp5
title: Occurrence Download

description: A dataset containing 15230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes aegypti (Linnaeus, 1762)",
 "Country is Mexico",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 15230 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032633-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3598598_d1
title: Additional file 1 of Coupling high-throughput genetics with phylogenetic information reveals an epistatic interaction on the influenza A virus M segment

description: Supplementary Dataset 1: RF index for each mutation. (XLS 364 kb)
DOI: 10.6084/m9.figshare.c.3598547_d6
title: Additional file 3: Table S2. of Reference genes for accurate gene expression analyses across different tissues, developmental stages and genotypes in rice for drought tolerance

description: Weighted rank score of gene members of commonly used reference gene families. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3598547_d3
title: Additional file 4: Table S3. of Reference genes for accurate gene expression analyses across different tissues, developmental stages and genotypes in rice for drought tolerance

description: Primers information used in this study. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3598523_d8
title: Additional file 5: Table S5. of Whole genome sequence analysis of the TALLYHO/Jng mouse

description: Variants in orthologs of GWAS-associated and Mendelian Genes. List of orthologous genes to human genes associated by GWAS studies to obesity, diabetes, and metabolic syndrome, and to Mendelian obesity genes, with variant type and number. (XLSX 74 kb)
DOI: 10.6084/m9.figshare.c.3598523_d7
title: Additional file 9: Table S9. of Whole genome sequence analysis of the TALLYHO/Jng mouse

description: Genes with pathogenic private indels. List of genes with pathogenic private indels, with SO terms for the corresponding indel. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3598547_d2
title: Additional file 2: Table S1. of Reference genes for accurate gene expression analyses across different tissues, developmental stages and genotypes in rice for drought tolerance

description: List of publicly available microarray data experiments and their samples used for this study. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3598523_d6
title: Additional file 6: Table S6. of Whole genome sequence analysis of the TALLYHO/Jng mouse

description: Private SNP classification. Classification of private TH SNPs by sets of SO terms associated with the SNP. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3598523_d5
title: Additional file 7: Table S7. of Whole genome sequence analysis of the TALLYHO/Jng mouse

description: Private indel classification. Classification of private TH indels by sets of SO terms associated with the indel. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3598523_d4
title: Additional file 8: Table S8. of Whole genome sequence analysis of the TALLYHO/Jng mouse

description: Genes with pathogenic private SNPs. List of genes with pathogenic private SNPs, with SIFT scores and SO terms for the corresponding SNP. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.c.3598523_d3
title: Additional file 2: Table S2. of Whole genome sequence analysis of the TALLYHO/Jng mouse

description: Classification of TH SNPs by sets of SO terms associated with the SNP. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3597938_d5
title: Additional file 5: Table S2. of Transplantation of rat embryonic stem cell-derived retinal progenitor cells preserves the retinal structure and function in rat retinal degeneration

description: List of log2 expression levels of tissue specific genes by microarray analysis. (XLS 59 kb)
DOI: 10.6084/m9.figshare.c.3597935_d3
title: Additional file 1: of Expanding preconception carrier screening for the Jewish population using high throughput microfluidics technology and next generation sequencing

description: List of mutations included in the screening panel. (XLS 61Â kb)
DOI: 10.60656/7946cf55639f494a
title: Custom collection of MWR brightness temperature data from Warsaw between 1 Jan 2019 and 12 Dec 2024
DOI: 10.6084/m9.figshare.c.3597881_d3
title: Additional file 4: of Comparative transcriptome sequencing and de novo analysis of Vaccinium corymbosum during fruit and color development

description: File S4. List of unigenes that cover 9 selected genes respectively. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3597881_d4
title: Additional file 3: of Comparative transcriptome sequencing and de novo analysis of Vaccinium corymbosum during fruit and color development

description: File S3. Repeats of EST-SSRs in blueberry. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3597833_d10
title: Additional file 3: Table S2. of Comprehensive analyses of tumor immunity: implications for cancer immunotherapy

description: Immune infiltration estimation. (XLSX 2364 kb)
DOI: 10.6084/m9.figshare.c.3597881_d2
title: Additional file 1: of Comparative transcriptome sequencing and de novo analysis of Vaccinium corymbosum during fruit and color development

description: File S1. Summary of the sequence assembly for five cultivars of blueberry. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3597365_d13
title: Additional file 2: Table S1. of Transcriptomic analyses of regenerating adult feathers in chicken

description: Summary of the 15 feather epithelial transcriptomes. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3597365_d11
title: Additional file 3: Table S2. of Transcriptomic analyses of regenerating adult feathers in chicken

description: Gene name and primer sequences used in RNA-seq validation. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3597365_d10
title: Additional file 12: Table S11. of Transcriptomic analyses of regenerating adult feathers in chicken

description: Canonical pathways for cEF vs. cMF differentially expressed gene set. (XLS 46Â kb)
DOI: 10.6084/m9.figshare.c.3597365_d8
title: Additional file 4: Table S3. of Transcriptomic analyses of regenerating adult feathers in chicken

description: Transcriptome Expression Data. Table of mapped reads to Galgal4 transcripts for all 15 data sets. FPKM (Fragments per kilobase of exon per million fragments mapped): normalized transcript abundance values for each gene in the indicated tissues. (CSV 1314Â kb)
DOI: 10.6084/m9.figshare.c.3597365_d9
title: Additional file 7: Table S6. of Transcriptomic analyses of regenerating adult feathers in chicken

description: cEB vs. cEF differentially expressed gene set (shown in FPKM and fold change). (XLSX 94Â kb)
DOI: 10.6084/m9.figshare.c.3597365_d6
title: Additional file 13: Table S12. of Transcriptomic analyses of regenerating adult feathers in chicken

description: Canonical pathways for cMF vs. cLF differentially expressed gene set. (XLS 30Â kb)
DOI: 10.6084/m9.figshare.c.3597365_d7
title: Additional file 5: Table S4. of Transcriptomic analyses of regenerating adult feathers in chicken

description: Positively selected and/or rapid evolving genes in avian lineages [29] that are expressed in all feather samples. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3597365_d5
title: Additional file 8: Table S7. of Transcriptomic analyses of regenerating adult feathers in chicken

description: cEF vs. cMF differentially expressed gene set (shown in FPKM and fold change). (XLSX 86Â kb)
DOI: 10.6084/m9.figshare.c.3597365_d3
title: Additional file 6: Table S5. of Transcriptomic analyses of regenerating adult feathers in chicken

description: cEB vs. cLB differentially expressed gene set (shown in FPKM and fold change). (XLSX 81Â kb)
DOI: 10.6084/m9.figshare.c.3597365_d4
title: Additional file 10: Table S9. of Transcriptomic analyses of regenerating adult feathers in chicken

description: Canonical pathways for cEB vs. cLB differentially expressed gene set. (XLS 50Â kb)
DOI: 10.6084/m9.figshare.c.3597365_d2
title: Additional file 11: Table S10. of Transcriptomic analyses of regenerating adult feathers in chicken

description: Canonical pathways for cEB vs. cEF differentially expressed gene set. (XLS 35Â kb)
DOI: 10.6084/m9.figshare.c.3597296_d15
title: Additional file 6: Table S6. of Histone modifications facilitate the coexpression of bidirectional promoters in rice

description: Expression modes of bidirectional gene pairs associated with rice BDPs. (XLS 307Â kb)
DOI: 10.6084/m9.figshare.c.3597365_d1
title: Additional file 9: Table S8. of Transcriptomic analyses of regenerating adult feathers in chicken

description: cMF vs. cLF differentially expressed gene set (shown in FPKM and fold change). (XLSX 62Â kb)
DOI: 10.6084/m9.figshare.c.3597296_d14
title: Additional file 7: Figure S1. of Histone modifications facilitate the coexpression of bidirectional promoters in rice

description: Coexpression analysis of gene pairs associated with BDPs with size separated by every 100 bp intergenic length The Pearson correlation coefficient was calculated from all gene pairs corresponding to BDPs separated every 100 bp using the absolute expression value. Statistical analysis was provided by a two-sample K-S test, where ** p
DOI: 10.6084/m9.figshare.c.3597026_d4
title: Additional file 2: of Hologenome analysis of two marine sponges with different microbiomes

description: Sources and statistics of sequences used for the hologenome analysis. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.c.3596933_d12
title: Additional file 6: of Whole-transcriptome analysis of differentially expressed genes in the ray florets and disc florets of Chrysanthemum morifolium

description: The DEGs specifically expressed in disc florets. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.c.3596933_d11
title: Additional file 4: of Whole-transcriptome analysis of differentially expressed genes in the ray florets and disc florets of Chrysanthemum morifolium

description: The up-regulated genes in ray florets in chrysanthemum. (XLSX 94Â kb)
DOI: 10.6084/m9.figshare.c.3596933_d10
title: Additional file 8: of Whole-transcriptome analysis of differentially expressed genes in the ray florets and disc florets of Chrysanthemum morifolium

description: KEGG enrichment of DEGs between ray florets and disc florets. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.c.3596933_d9
title: Additional file 2: of Whole-transcriptome analysis of differentially expressed genes in the ray florets and disc florets of Chrysanthemum morifolium

description: The genes assigned to GO terms related to flower development in chrysanthemum. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3596933_d6
title: Additional file 7: of Whole-transcriptome analysis of differentially expressed genes in the ray florets and disc florets of Chrysanthemum morifolium

description: GO enrichment of DEGs between ray florets and disc florets. (XLSX 73Â kb)
DOI: 10.6084/m9.figshare.c.3596933_d7
title: Additional file 12: of Whole-transcriptome analysis of differentially expressed genes in the ray florets and disc florets of Chrysanthemum morifolium

description: Primers used in real-time quantitative PCR of Chrysanthemum morifolium. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3596933_d5
title: Additional file 10: of Whole-transcriptome analysis of differentially expressed genes in the ray florets and disc florets of Chrysanthemum morifolium

description: The important function genes in anthocyanin biosynthetic pathway in chrysanthemum. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3596933_d3
title: Additional file 9: of Whole-transcriptome analysis of differentially expressed genes in the ray florets and disc florets of Chrysanthemum morifolium

description: The important genes controlling flower development and organ determination in chrysanthemum. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3596933_d2
title: Additional file 3: of Whole-transcriptome analysis of differentially expressed genes in the ray florets and disc florets of Chrysanthemum morifolium

description: The genes assigned to GO terms related to stamen development in chrysanthemum. (XLSX 28Â kb)
DOI: 10.6084/m9.figshare.c.3596933_d1
title: Additional file 5: of Whole-transcriptome analysis of differentially expressed genes in the ray florets and disc florets of Chrysanthemum morifolium

description: The down-regulated genes in ray florets in chrysanthemum. (XLSX 153Â kb)
DOI: 10.5281/zenodo.14428318
title: Copilot Output Data for "Assessing the Impact of Recursive Code Generation by AI tools, like GitHub Copilot, on Code Quality, Accuracy, and Integrity Across Iterations"
DOI: 10.5281/zenodo.14428319
title: Copilot Output Data for "Assessing the Impact of Recursive Code Generation by AI tools, like GitHub Copilot, on Code Quality, Accuracy, and Integrity Across Iterations"
DOI: 10.5281/zenodo.14428935
title: Copilot Output Data for "Assessing the Impact of Recursive Code Generation by AI tools, like GitHub Copilot, on Code Quality, Accuracy, and Integrity Across Iterations"
DOI: 10.6084/m9.figshare.c.3596558_d5
title: Additional file 6: of Identification of miRNAs involved in fruit ripening in Cavendish bananas by deep sequencing

description: The predicted target genes of differentially expressed miRNAs. The target genes of up-regulated miRNAs (A) and the target genes of down-regulated miRNAs (B) in the comparison ET/CK. (ODS 27 kb)
DOI: 10.6084/m9.figshare.c.3596558_d4
title: Additional file 7: of Identification of miRNAs involved in fruit ripening in Cavendish bananas by deep sequencing

description: Significant GO terms for target genes of differentially expressed miRNAs. A total of 601 GO terms of the target genes annotated in this study. (XLSX 70 kb)
DOI: 10.6084/m9.figshare.c.3596558_d3
title: Additional file 2: of Identification of miRNAs involved in fruit ripening in Cavendish bananas by deep sequencing

description: Detailed information on the known miRNAs. MiRNA family, miRNA ID, location, length, sequence, total reads for mature miRNA are listed. (XLSX 1247 kb)
DOI: 10.6084/m9.figshare.c.3596558_d1
title: Additional file 9: of Identification of miRNAs involved in fruit ripening in Cavendish bananas by deep sequencing

description: The primers used in this study. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3596558_d2
title: Additional file 8: of Identification of miRNAs involved in fruit ripening in Cavendish bananas by deep sequencing

description: The most enriched pathways that were identified for the target genes. A total of 53 most enriched pathways of target gene annotated in this study. (XLS 41 kb)
DOI: 10.6084/m9.figshare.c.3596489_d5
title: Additional file 2: Table S1. of Progesterone receptor blockade in human breast cancer cells decreases cell cycle progression through G2/M by repressing G2/M genes

description: 2 way ANOVA, multiple comparisons with Bonferroni correction of proliferation data presented in Fig.Â 1. (XLS 308 kb)
DOI: 10.6084/m9.figshare.c.3596489_d3
title: Additional file 1: of Progesterone receptor blockade in human breast cancer cells decreases cell cycle progression through G2/M by repressing G2/M genes

description: Table S2. Slope of lines in Fig.Â 1 d-f; Table S3. Genes involved in cell cycle progression; Table S4. Primers utilized for RT-qPCR validation of microarray results. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3596489_d1
title: Additional file 4: Table S5. of Progesterone receptor blockade in human breast cancer cells decreases cell cycle progression through G2/M by repressing G2/M genes

description: IPA Upstream Analysis, except where noted, data was chosen to be included if the gene was differentially expressed and the z-score significant; Table S6. Subset of the 16 genes with E2F1 and Myc binding in the MCF-7 Encode track; Table S7. Motif enrichment results; Table S8. Subset of 16 genes with CHR motif in regulatory region; Table 9. Subset of 16 genes with NFY motif in regulatory region; Table 10. Subset of 16 genes with evolutionary conserved CHR elements and bound by MMB complex and FOXM1 as determined by MĂźller et al. [22]. (XLS 105 KB)
DOI: 10.6084/m9.figshare.c.3596153_d3
title: MOESM2 of Adaptive mutations in sugar metabolism restore growth on glucose in a pyruvate decarboxylase negative yeast strain

description: Additional file 2. Â Genome sequencing results of Pdc negative strain E1 and its evolved strains E1A, E1B, E1C.
DOI: 10.6084/m9.figshare.c.3596072_d2
title: Additional file 2: Figure S2. of Assessment of the prognostic and predictive utility of the Breast Cancer Index (BCI): an NCIC CTG MA.14 study

description: a Frequency histogram of BCI. b Frequency histogram of H:I. c Frequency histogram of MGI. (ZIP 117 kb)
DOI: 10.6084/m9.figshare.c.3596060_d1
title: Additional file 1: of Immunomodulatory and anticancer potential of Gan cao (Glycyrrhiza uralensis Fisch.) polysaccharides by CT-26 colon carcinoma cell growth inhibition and cytokine IL-7 upregulation in vitro

description: Availability of data and materials. (XLS 40Â kb)
DOI: 10.6084/m9.figshare.3175168.v1
title: What kinds of research are cited quickly in policy documents? Results from an exploratory study
DOI: 10.6084/m9.figshare.1041821.v2
title: How consistent are altmetrics providers? Study of 1000 PLOS ONE publications using the PLOS ALM, Mendeley and Altmetric.com APIs
DOI: 10.6084/m9.figshare.1356139.v1
title: Clinico Epidemiological Study of Herpes Zoster in HIV Era in a Tertiary Care Hospital in South India
DOI: 10.6084/m9.figshare.1344707.v1
title: Qualitative Study of Landfill Leachate from Different Ages of Landfill Sites of Various Countries Including Nepal
DOI: 10.6084/m9.figshare.1400358.v1
title: Knowledge on Complications of Immobility among the Immobilized Patients in Selected Wards at Selected Hospital
DOI: 10.6084/m9.figshare.1536349.v1
title: Nursing Students Perception towards Profession and Future Intentions
DOI: 10.6084/m9.figshare.1410995.v1
title: A Vertical Creeping Strike Slip Fault in a Viscoelastic Half Space under the Action of Tectonic Forces Varying with Time
DOI: 10.6084/m9.figshare.c.3639749_d6
title: Additional file 2: Table S2. of Differential expression of the Nrf2-linked genes in pediatric septic shock

description: List of Nrf2-linked gene probes (n =281) corresponding to 178 unique genes differentially regulated between subjects with septic shock and healthy controls. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.c.3639749_d5
title: Additional file 6: Table S6. of Differential expression of the Nrf2-linked genes in pediatric septic shock

description: List of network genes shown in Fig.Â 4. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3639749_d3
title: Additional file 3: Table S3. of Differential expression of the Nrf2-linked genes in pediatric septic shock

description: List of network genes shown in Fig.Â 1. (XLSX 13 kb)