cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.sx57h9
title: Occurrence Download

description: A dataset containing 300 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE",
 "TaxonKey is Sousa chinensis",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 300 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018596-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.denu6f
title: Occurrence Download

description: A dataset containing 862 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE",
 "TaxonKey is Sousa plumbea",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 862 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018599-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.834b8s
title: Occurrence Download

description: A dataset containing 130946 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Decapterus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 130946 records from 311 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018513-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5j48wk
title: Occurrence Download

description: A dataset containing 23940 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prunella vulgaris",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 23940 records from 622 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018597-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.evncvn
title: Occurrence Download

description: A dataset containing 724 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "OccurrenceStatus is Present",
 "TaxonKey is Noteridae"
 ]
}

 The dataset includes 724 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018598-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5jjpff
title: Occurrence Download

description: A dataset containing 6014 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dichanthium annulatum",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 6014 records from 206 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018600-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.525qt5
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Callosciurus pygerythrus blythii"
 ]
}

 The dataset includes 28 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018602-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3bv3mr
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Callosciurus pygerythrus lokroides"
 ]
}

 The dataset includes 64 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018603-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v26z37
title: Occurrence Download

description: A dataset containing 3721 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE",
 "TaxonKey is Sousa sahulensis",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 3721 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018601-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eha5xw
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE",
 "TaxonKey is Sousa teuszii",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 40 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018604-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cedegd
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Entomophaga maimaiga"
 ]
}

 The dataset includes 41 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018605-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nduacb
title: Occurrence Download

description: A dataset containing 259 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Specimen)",
 "Geometry POLYGON((-100.18 32.62,-84.12 32.62,-84.12 36.97,-100.18 36.97,-100.18 32.62))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC-BY-NC 4.0, CC-BY 4.0, CC0 1.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Ochrophyta"
 ]
}

 The dataset includes 259 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018608-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wykbkx
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudocarpidium wrightii",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 40 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018609-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17684629
title: SEC-SAXS data from Escherichia coli aspartate transcarbamoylase (ligand-free T-state)

description: Abstract: E. coli aspartate transcarbamoylase (ATCase) is considered a textbook example of allostery, but the molecular mechanism by which nucleotides exert allosteric control has been long debated. This SEC-SAXS dataset is one of six collected in the presence of different nucleotide conditions at pH 7.5 in the presence of Mg2+. Corresponding cryo-EM map and model: EMD-47956, PDB: 9EEK

Experimental description: Size exclusion chromatography (SEC) coupled small-angle X-ray scattering (SAXS) was performed with a 10.0 keV 250 x 250 μm X-ray beam at the Cornell High Energy Synchrotron Source (CHESS) ID7A beamline. The sample (50 μL of 56 μM ATCase in 40 mM Tris-HCl pH 7.5, 15 mM MgCl2, 1 mM TCEP) was centrifuged (15,000 × g, 10 min, 4 °C) and loaded onto a Superdex 200 10/300 GL column (Cytiva) operated by a GE Akta Purifier at 4 °C that was pre-equilibrated in a matched buffer. The elution flowed directly into an in-vacuum X-ray sample cell held at 4 °C at 0.5 mL min−1. Scattering images (2-second exposures) were collected throughout the elution on an Eiger 4M detector covering a range of q ≈ 0.0086 – 0.466 Å−1, where q = 4π/λ sin θ, λ is the X-ray wavelength, and 2θ is the scattering angle.

File description: zip file of .dat files integrated in BioXTAS RAW
DOI: 10.5281/zenodo.17684630
title: SEC-SAXS data from Escherichia coli aspartate transcarbamoylase (ligand-free T-state)

description: Abstract: E. coli aspartate transcarbamoylase (ATCase) is considered a textbook example of allostery, but the molecular mechanism by which nucleotides exert allosteric control has been long debated. This SEC-SAXS dataset is one of six collected in the presence of different nucleotide conditions at pH 7.5 in the presence of Mg2+. Corresponding cryo-EM map and model: EMD-47956, PDB: 9EEK

Experimental description: Size exclusion chromatography (SEC) coupled small-angle X-ray scattering (SAXS) was performed with a 10.0 keV 250 x 250 μm X-ray beam at the Cornell High Energy Synchrotron Source (CHESS) ID7A beamline. The sample (50 μL of 56 μM ATCase in 40 mM Tris-HCl pH 7.5, 15 mM MgCl2, 1 mM TCEP) was centrifuged (15,000 × g, 10 min, 4 °C) and loaded onto a Superdex 200 10/300 GL column (Cytiva) operated by a GE Akta Purifier at 4 °C that was pre-equilibrated in a matched buffer. The elution flowed directly into an in-vacuum X-ray sample cell held at 4 °C at 0.5 mL min−1. Scattering images (2-second exposures) were collected throughout the elution on an Eiger 4M detector covering a range of q ≈ 0.0086 – 0.466 Å−1, where q = 4π/λ sin θ, λ is the X-ray wavelength, and 2θ is the scattering angle.

File description: zip file of .dat files integrated in BioXTAS RAW
DOI: 10.15468/dl.gmmpzk
title: Occurrence Download

description: A dataset containing 3510 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE",
 "TaxonKey is Stenella attenuata",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 3510 records from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018606-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7rqnas
title: Occurrence Download

description: A dataset containing 2301 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE",
 "TaxonKey is Stenella clymene",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 2301 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018610-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17684632
title: SEC-SAXS data from Escherichia coli aspartate transcarbamoylase (nucleotide-free R-state)

description: Abstract: E. coli aspartate transcarbamoylase (ATCase) is considered a textbook example of allostery, but the molecular mechanism by which nucleotides exert allosteric control has been long debated. This SEC-SAXS dataset is one of six collected in the presence of different nucleotide conditions at pH 7.5 in the presence of Mg2+. Corresponding cryo-EM map and model: EMD-47961, PDB: 9EEP

Experimental description: Size exclusion chromatography (SEC) coupled small-angle X-ray scattering (SAXS) was performed with a 9.95 keV 250 x 250 μm X-ray beam at the Cornell High Energy Synchrotron Source (CHESS) ID7A beamline. The sample (50 μL of 56 μM ATCase in 40 mM Tris-HCl pH 7.5, 15 mM MgCl2, 1 mM TCEP, 10 mM succinate, 0.5 mM CP) was centrifuged (15,000 × g, 10 min, 4 °C) and loaded onto a Superdex 200 10/300 GL column (Cytiva) operated by a GE Akta Purifier at 4 °C that was pre-equilibrated in a matched buffer. The elution flowed directly into an in-vacuum X-ray sample cell held at 4 °C at 0.6 mL min−1. Scattering images (2-second exposures) were collected throughout the elution on an Eiger 4M detector covering a range of q ≈ 0.0080 – 0.525 Å−1, where q = 4π/λ sin θ, λ is the X-ray wavelength, and 2θ is the scattering angle. 

File description: zip file of .dat files integrated in BioXTAS RAW
DOI: 10.5281/zenodo.17684631
title: SEC-SAXS data from Escherichia coli aspartate transcarbamoylase (nucleotide-free R-state)

description: Abstract: E. coli aspartate transcarbamoylase (ATCase) is considered a textbook example of allostery, but the molecular mechanism by which nucleotides exert allosteric control has been long debated. This SEC-SAXS dataset is one of six collected in the presence of different nucleotide conditions at pH 7.5 in the presence of Mg2+. Corresponding cryo-EM map and model: EMD-47961, PDB: 9EEP

Experimental description: Size exclusion chromatography (SEC) coupled small-angle X-ray scattering (SAXS) was performed with a 9.95 keV 250 x 250 μm X-ray beam at the Cornell High Energy Synchrotron Source (CHESS) ID7A beamline. The sample (50 μL of 56 μM ATCase in 40 mM Tris-HCl pH 7.5, 15 mM MgCl2, 1 mM TCEP, 10 mM succinate, 0.5 mM CP) was centrifuged (15,000 × g, 10 min, 4 °C) and loaded onto a Superdex 200 10/300 GL column (Cytiva) operated by a GE Akta Purifier at 4 °C that was pre-equilibrated in a matched buffer. The elution flowed directly into an in-vacuum X-ray sample cell held at 4 °C at 0.6 mL min−1. Scattering images (2-second exposures) were collected throughout the elution on an Eiger 4M detector covering a range of q ≈ 0.0080 – 0.525 Å−1, where q = 4π/λ sin θ, λ is the X-ray wavelength, and 2θ is the scattering angle. 

File description: zip file of .dat files integrated in BioXTAS RAW
DOI: 10.5281/zenodo.17684634
title: SEC-SAXS data from Escherichia coli aspartate transcarbamoylase (R-state with CTP)

description: Abstract: E. coli aspartate transcarbamoylase (ATCase) is considered a textbook example of allostery, but the molecular mechanism by which nucleotides exert allosteric control has been long debated. This SEC-SAXS dataset is one of six collected in the presence of different nucleotide conditions at pH 7.5 in the presence of Mg2+. Corresponding cryo-EM map and model: EMD-47960, 9EEO

Experimental description: Size exclusion chromatography (SEC) coupled small-angle X-ray scattering (SAXS) was performed with a 9.95 keV 250 x 250 μm X-ray beam at the Cornell High Energy Synchrotron Source (CHESS) ID7A beamline. The sample (50 μL of 56 μM ATCase in 40 mM Tris-HCl pH 7.5, 15 mM MgCl2, 1 mM TCEP, 10 mM succinate, 0.5 mM CP, 1.5 mM CTP) was centrifuged (15,000 × g, 10 min, 4 °C) and loaded onto a Superdex 200 10/300 GL column (Cytiva) operated by a GE Akta Purifier at 4 °C that was pre-equilibrated in a matched buffer. The elution flowed directly into an in-vacuum X-ray sample cell held at 4 °C at 0.5 mL min−1. Scattering images (2-second exposures) were collected throughout the elution on an Eiger 4M detector covering a range of q ≈ 0.0095 – 0.481 Å−1, where q = 4π/λ sin θ, λ is the X-ray wavelength, and 2θ is the scattering angle.

File description: zip file of .dat files integrated in BioXTAS RAW
DOI: 10.5281/zenodo.17684633
title: SEC-SAXS data from Escherichia coli aspartate transcarbamoylase (R-state with CTP)

description: Abstract: E. coli aspartate transcarbamoylase (ATCase) is considered a textbook example of allostery, but the molecular mechanism by which nucleotides exert allosteric control has been long debated. This SEC-SAXS dataset is one of six collected in the presence of different nucleotide conditions at pH 7.5 in the presence of Mg2+. Corresponding cryo-EM map and model: EMD-47960, 9EEO

Experimental description: Size exclusion chromatography (SEC) coupled small-angle X-ray scattering (SAXS) was performed with a 9.95 keV 250 x 250 μm X-ray beam at the Cornell High Energy Synchrotron Source (CHESS) ID7A beamline. The sample (50 μL of 56 μM ATCase in 40 mM Tris-HCl pH 7.5, 15 mM MgCl2, 1 mM TCEP, 10 mM succinate, 0.5 mM CP, 1.5 mM CTP) was centrifuged (15,000 × g, 10 min, 4 °C) and loaded onto a Superdex 200 10/300 GL column (Cytiva) operated by a GE Akta Purifier at 4 °C that was pre-equilibrated in a matched buffer. The elution flowed directly into an in-vacuum X-ray sample cell held at 4 °C at 0.5 mL min−1. Scattering images (2-second exposures) were collected throughout the elution on an Eiger 4M detector covering a range of q ≈ 0.0095 – 0.481 Å−1, where q = 4π/λ sin θ, λ is the X-ray wavelength, and 2θ is the scattering angle.

File description: zip file of .dat files integrated in BioXTAS RAW
DOI: 10.5281/zenodo.17684635
title: SEC-SAXS data from Escherichia coli aspartate transcarbamoylase (R-state with CTP/UTP)

description: Abstract: E. coli aspartate transcarbamoylase (ATCase) is considered a textbook example of allostery, but the molecular mechanism by which nucleotides exert allosteric control has been long debated. This SEC-SAXS dataset is one of six collected in the presence of different nucleotide conditions at pH 7.5 in the presence of Mg2+. Corresponding cryo-EM map and model: EMD-47958, PDB: 9EEM

Experimental description: Size exclusion chromatography (SEC) coupled small-angle X-ray scattering (SAXS) was performed with a 11.34 keV 250 x 250 μm X-ray beam at the Cornell High Energy Synchrotron Source (CHESS) ID7A beamline. The sample (50 μL of 56 μM ATCase in 40 mM Tris-HCl pH 7.5, 15 mM MgCl2, 1 mM TCEP, 10 mM succinate, 0.5 mM CP, 1.5 mM CTP, 1.5 mM UTP) was centrifuged (15,000 × g, 10 min, 4 °C) and loaded onto a Superdex 200 10/300 GL column (Cytiva) operated by a GE Akta Purifier at 4 °C that was pre-equilibrated in a matched buffer. The elution flowed directly into an in-vacuum X-ray sample cell held at 4 °C at 0.3 mL min−1. Scattering images (3-second exposures) were collected throughout the elution on an Eiger 4M detector covering a range of q ≈ 0.0079 – 0.453 Å−1, where q = 4π/λ sin θ, λ is the X-ray wavelength, and 2θ is the scattering angle.

File description: zip file of .dat files integrated in BioXTAS RAW
DOI: 10.5281/zenodo.17684636
title: SEC-SAXS data from Escherichia coli aspartate transcarbamoylase (R-state with CTP/UTP)

description: Abstract: E. coli aspartate transcarbamoylase (ATCase) is considered a textbook example of allostery, but the molecular mechanism by which nucleotides exert allosteric control has been long debated. This SEC-SAXS dataset is one of six collected in the presence of different nucleotide conditions at pH 7.5 in the presence of Mg2+. Corresponding cryo-EM map and model: EMD-47958, PDB: 9EEM

Experimental description: Size exclusion chromatography (SEC) coupled small-angle X-ray scattering (SAXS) was performed with a 11.34 keV 250 x 250 μm X-ray beam at the Cornell High Energy Synchrotron Source (CHESS) ID7A beamline. The sample (50 μL of 56 μM ATCase in 40 mM Tris-HCl pH 7.5, 15 mM MgCl2, 1 mM TCEP, 10 mM succinate, 0.5 mM CP, 1.5 mM CTP, 1.5 mM UTP) was centrifuged (15,000 × g, 10 min, 4 °C) and loaded onto a Superdex 200 10/300 GL column (Cytiva) operated by a GE Akta Purifier at 4 °C that was pre-equilibrated in a matched buffer. The elution flowed directly into an in-vacuum X-ray sample cell held at 4 °C at 0.3 mL min−1. Scattering images (3-second exposures) were collected throughout the elution on an Eiger 4M detector covering a range of q ≈ 0.0079 – 0.453 Å−1, where q = 4π/λ sin θ, λ is the X-ray wavelength, and 2θ is the scattering angle.

File description: zip file of .dat files integrated in BioXTAS RAW
DOI: 10.5281/zenodo.17684638
title: SEC-SAXS data from Escherichia coli aspartate transcarbamoylase (R-state with ATP)

description: Abstract: E. coli aspartate transcarbamoylase (ATCase) is considered a textbook example of allostery, but the molecular mechanism by which nucleotides exert allosteric control has been long debated. This SEC-SAXS dataset is one of six collected in the presence of different nucleotide conditions at pH 7.5 in the presence of Mg2+. Corresponding cryo-EM map and model: EMD-47963, PDB: 9EEQ

Experimental description: Size exclusion chromatography (SEC) coupled small-angle X-ray scattering (SAXS) was performed with a 9.95 keV 250 x 250 μm X-ray beam at the Cornell High Energy Synchrotron Source (CHESS) ID7A beamline. The sample (50 μL of 56 μM ATCase in 40 mM Tris-HCl pH 7.5, 15 mM MgCl2, 1 mM TCEP, 10 mM succinate, 0.5 mM CP, 5 mM ATP) was centrifuged (15,000 × g, 10 min, 4 °C) and loaded onto a Superdex 200 10/300 GL column (Cytiva) operated by a GE Akta Purifier at 4 °C that was pre-equilibrated in a matched buffer. The elution flowed directly into an in-vacuum X-ray sample cell held at 4 °C at 0.2 mL min−1. Scattering images (2-second exposures) were collected throughout the elution on an Eiger 4M detector covering a range of q ≈ 0.0080 – 0.525 Å−1, where q = 4π/λ sin θ, λ is the X-ray wavelength, and 2θ is the scattering angle.

File description: zip file of .dat files integrated in BioXTAS RAW
DOI: 10.5281/zenodo.17684637
title: SEC-SAXS data from Escherichia coli aspartate transcarbamoylase (R-state with ATP)

description: Abstract: E. coli aspartate transcarbamoylase (ATCase) is considered a textbook example of allostery, but the molecular mechanism by which nucleotides exert allosteric control has been long debated. This SEC-SAXS dataset is one of six collected in the presence of different nucleotide conditions at pH 7.5 in the presence of Mg2+. Corresponding cryo-EM map and model: EMD-47963, PDB: 9EEQ

Experimental description: Size exclusion chromatography (SEC) coupled small-angle X-ray scattering (SAXS) was performed with a 9.95 keV 250 x 250 μm X-ray beam at the Cornell High Energy Synchrotron Source (CHESS) ID7A beamline. The sample (50 μL of 56 μM ATCase in 40 mM Tris-HCl pH 7.5, 15 mM MgCl2, 1 mM TCEP, 10 mM succinate, 0.5 mM CP, 5 mM ATP) was centrifuged (15,000 × g, 10 min, 4 °C) and loaded onto a Superdex 200 10/300 GL column (Cytiva) operated by a GE Akta Purifier at 4 °C that was pre-equilibrated in a matched buffer. The elution flowed directly into an in-vacuum X-ray sample cell held at 4 °C at 0.2 mL min−1. Scattering images (2-second exposures) were collected throughout the elution on an Eiger 4M detector covering a range of q ≈ 0.0080 – 0.525 Å−1, where q = 4π/λ sin θ, λ is the X-ray wavelength, and 2θ is the scattering angle.

File description: zip file of .dat files integrated in BioXTAS RAW