cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28536104.v1
title: RAW Data and Figures for "Reinforcement of Conformity to the Majority or Minority: Effects of Task Ambiguity and the Salience of Reinforcing Stimuli"

description: Social conformity has been extensively studied in both social psychology and behavior analysis. From a behavioral perspective, conformity is shaped by contingencies of reinforcement and punishment within social groups (Skinner, 1953; Guerin, 1995). The present study aimed to replicate and extend Angelo and Andery’s (2024) findings by examining how reinforcement contingencies influence majority and minority conformity. Using a single-subject reversal design, participants engaged in a perceptual task while confederates provided consensus responses. Experimental conditions reinforced either majority or minority conformity, with an increased number of response options and heightened consequence salience compared to previous studies. Findings aligned with prior research, indicating that reinforcement effectively shaped conformity, with majority reinforcement exerting a stronger influence. Moreover, initial exposure to majority reinforcement made later shifts to minority conformity more difficult. These results contribute to a behavioral understanding of conformity, emphasizing the role of reinforcement contingencies in social influence dynamics.
DOI: 10.6084/m9.figshare.29103062.v1
title: <b>Potential impact of parental origin of inheritance</b>

description: <b>Potential impact of parental origin of inheritance on the clinical presentation of familial partial lipodystrophy type 2 syndrome</b>
DOI: 10.6084/m9.figshare.21939632.v1
title: Trait sources database

description: Information on the sources were trait information was retrieved.
DOI: 10.6084/m9.figshare.12979889.v1
title: Raw data

description: Food choice, interannual variation, white-headed langurs; limestone forest
DOI: 10.6084/m9.figshare.22189177.v1
title: TestData.xlsx

description: Test data of “Distributed Load Restoration for Interdependent Transmission-Distribution-Gas Systems Considering Pipeline Gas Storage Capacity ”
DOI: 10.6084/m9.figshare.27291300.v1
title: Metabolomic data

description: During parasitoid wasp infection, activated immune cells of <i>Drosophila melanogaster</i> larvae release adenosine to conserve nutrients for immune response. S-adenosylmethionine (SAM) is a methyl group donor for most methylations in the cell and is synthesized from methionine and ATP. After methylation, SAM is converted to S-adenosylhomocysteine, which is further metabolized to adenosine and homocysteine. Here, we show that the SAM transmethylation pathway is up-regulated during immune cell activation and that the adenosine produced by this pathway in immune cells acts as a systemic signal to delay <i>Drosophila</i> larval development and ensure sufficient nutrient supply to the immune system. We further show that the up-regulation of the SAM transmethylation pathway and the efficiency of the immune response also depend on the recycling of adenosine back to ATP by adenosine kinase and adenylate kinase. We therefore hypothesize that adenosine may act as a sensitive sensor of the balance between cell activity, represented by the sum of methylation events in the cell, and nutrient supply. If the supply of nutrients is insufficient for a given activity, adenosine may not be effectively recycled back into ATP and may be pushed out of the cell to serve as a signal to demand more nutrients.
DOI: 10.6084/m9.figshare.16897102.v1
title: Data for Methodological Foundation of a Numerical Taxonomy of Urban Form research paper

description: Data used in and resulting from the research presented in a paper Methodological Foundation of a Numerical Taxonomy of Urban Form. The archive contains input geometry, generated geometry, all measured morphometric characters and a final classification labels for Prague and Amsterdam.
DOI: 10.6084/m9.figshare.10078922.v1
title: Supplementary Material for: Functional Characterization and Pharmacological Evaluation of a Novel <b><i>GLA</i></b> Missense Mutation Found in a Severely Affected Fabry Disease Family

description: <b><i>Background:</i></b> Fabry disease (FD) is a rare X-linked storage disorder resulting from the deficient activity of the lysosomal hydrolase α-galactosidase A (α-Gal A). Here we describe a 23-year-old man with FD possessing a novel mutation in the <i>GLA</i> gene, the evaluation of his family, and the functional characterization of the novel variant. <b><i>Methods:</i></b> Two generations of a family were screened for FD by clinical symptoms and low enzymatic activity. This step was followed by DNA sequencing that showed a novel <i>GLA</i> missense mutation. To confirm the pathogenicity potential of the mutation, we employed site-directed polymerase chain reaction mutagenesis. <i>GLA</i> wild-type and mutant plasmids were transfected into mammalian cells; RNA and proteins were extracted for expression and analysis of enzymatic activity. <b><i>Results:</i></b> The patient presents the variant p.Asn34Asp in the <i>GLA</i> and had several manifestations of FD since adolescence. The investigation of the deficiency of α-Gal A was initiated due to stage 4 of chronic kidney disease. All family members carrying the novel mutation presented early symptoms, including index case’s mother, who received a renal transplant when she was 35 years old. <i>In silico</i> and in vitro analysis confirmed the pathogenic potential of the mutation p.Asn34Asp showing that the enzyme had only 4% of residual activity due to protein misfolding. The ability of the pharmacological chaperone 1-deoxygalactonojirimycin to recover the mutant was confirmed, producing 37.5% of residual activity. <b><i>Conclusion:</i></b> In this work, we present a novel missense mutation in <i>GLA</i> that leads to the production of a catalytically competent α-Gal A, which is degraded before its delivery to the lysosome, promoting severe manifestations of FD, with a very similar disease course in affected men and women.
DOI: 10.6084/m9.figshare.5128354.v1
title: Supplementary Material for: A Randomised, Double-Blind, Placebo-Controlled Trial of As-Needed Naltrexone in the Treatment of Pathological Gambling

description: <b><i>Background/Aims:</i></b> Effective treatment strategies are needed for the treatment of pathological gambling (PG). The efficacy of as-needed naltrexone was assessed in a single-centre, randomised, double-blind, placebo-controlled trial. <b><i>Methods:</i></b> The participants (n = 101) received either as-needed placebo or naltrexone (50 mg) and psychosocial support for 20 weeks. The primary outcome measure was the severity of PG assessed by the Yale-Brown Obsessive Compulsive Scale adapted for PG (PG-YBOCS). Secondary gambling-related outcome measures included thoughts/urges and behaviour subscales of PG-YBOCS as well as the highest daily expenditure and gambling frequency. In addition, RAND-36 scales of emotional well-being and social functioning were used as outcomes. The results were analysed using the intention-to-treat principle and linear random effects modelling. <b><i>Results:</i></b> No significant treatment group differences were found. In an exploratory analysis, emotional well-being increased in a subgroup of participants with <i>AA</i> genotype of opioid receptor, mu 1 <i>(OPRM1) A118G</i> polymorphism (p = 0.02). <b><i>Conclusion:</i></b> Overall, the as-needed naltrexone may not provide substantial additional benefit for PG patients receiving psychosocial support. Replication by larger scale studies is warranted to further evaluate naltrexone administration schedules for the treatment of PG and the role of <i>OPRM1</i>.
DOI: 10.6084/m9.figshare.3515867.v1
title: Appendix B. Collinearity and parameter bias.

description: Collinearity and parameter bias.
DOI: 10.6084/m9.figshare.641456.v1
title: Microarray data from "Regulation of Wnt4 in chronic obstructive pulmonary disease".

description: Microarray data, comparing age matched non-smokers, healthy smokers and COPD patients. Data from Durham AL. et al. "Regulation of Wnt4 in chronic obstructive pulmonary disease", FASEB J. (2013). doi 10.1096/fj.12-217083. - See more at: http://figshare.com/preview/_preview/641450#sthash.YIh8U1P1.dpuf
DOI: 10.6084/m9.figshare.26299210.v1
title: Data on academic staff of public universities of Ethiopia

description: The data is collected from academic staff of public universities of Ethiopia. It contains data related with demographic characteristics of the respondents, talent management, organizational commitment, and organizational performance.
DOI: 10.6084/m9.figshare.25663905.v2
title: KCNJ16_processed_exon_featureCounts_raw.txt

description: Bulk RNA-Seq dataset including raw counts of 3 organoids, including 1 WT and 1 compound heterozygous KCNJ16 knockout kidney organoids.
DOI: 10.6084/m9.figshare.12932012.v1
title: Long-term effects of 7-year warming experiment in the field on leaf hydraulic and economic traits of subtropical tree species

description: Rising temperature associated with climate change may have substantial impacts on forest tree functions. We conducted a 7-year warming experiment in sub-tropical China by translocating important native forest tree species (<i>Machilas breviflora</i>, <i>Syzygium rehderianum</i>,<i> Schima superba</i> and <i>Itea chinensis</i>) from cooler high-elevation-sites (600 m) to 1-2 ℃ warmer low-elevation-sites (300 and 30 m) to investigate warming effects on leaf hydraulic and economic traits. Here, we report data from the last three years (Years 5-7) of the experiment. Warming increased leaf hydraulic conductance (K<sub>leaf</sub>) of <i>S. superba </i>to meet the higher evaporative demand. <i>M. breviflora </i>(300 m), <i>S. rehderianum</i>,<i> S. superba</i> and <i>I. chinensis </i>(300 m and 30 m) exhibited higher area-based and mass-based maximum photosynthetic rates (A<sub>a</sub> and A<sub>m</sub>, respectively) related to increasing stomatal conductance (g<sub>s</sub>) and stomatal density in the wet season, which led to rapid growth; however, we observed decreased growth of <i>M. breviflora </i>at 30 m due to lower stomatal density and decreased A<sub>a</sub> in the wet season. Warming increased photosynthetic nitrogen use efficiency (PNUE) and photosynthetic phosphorus use efficiency (PPUE), but reduced leaf dry mass per unit area (LMA) due to lower leaf thickness, suggesting that these tree species allocated more resources into upregulating photosynthesis rather than into structural investment. Our findings highlight that there was trait variation in the capacity of trees to acclimate to warmer temperatures such that<i> I. chinensis </i>may benefit from warming, but <i>S. superba</i> may be negatively influenced by warming in future climates.
DOI: 10.6084/m9.figshare.24086166.v1
title: code

description: code used to generate the city-level population projection
DOI: 10.6084/m9.figshare.5334142.v1
title: High-throughput DFT calculations of formation energy, stability and oxygen vacancy formation energy of ABO3 perovskites

description: ABO<sub>3</sub> perovskites are oxide materials that are used for a variety of applications such as solid oxide fuel cells, piezo-, ferro-electricity and water splitting. Due to their remarkable stability with respect to cation substitution, new compounds for such applications potentially await discovery. In this work, we present an exhaustive dataset of formation energies of 5,329 cubic and distorted perovskites that were calculated using first-principles density functional theory. In addition to formation energies, several additional properties such as oxidation states, band gap, oxygen vacancy formation energy, and thermodynamic stability with respect to all phases in the Open Quantum Materials Database are also made publicly available. This large dataset for this ubiquitous crystal structure type contains 395 perovskites that are predicted to be thermodynamically stable, of which many have not yet been experimentally reported, and therefore represent theoretical predictions. The dataset thus opens avenues for future use, including materials discovery in many research-active areas.
DOI: 10.6084/m9.figshare.14899014.v1
title: Supplementary Material for: Adjuvant Therapy in Resected Nonmetastatic Stage II–IV Gallbladder Cancer: A Generalized Propensity Score Analysis

description: <b><i>Background:</i></b> The clinical benefits and efficacies of adjuvant therapies for gallbladder cancer (GBC) have not been verified due to insufficient clinical evidence. <b><i>Methods:</i></b> Patients with resected nonmetastatic stage II–IV GBC were selected from the Surveillance, Epidemiology, and End Results database and distributed into nonchemotherapy and chemoradiotherapy (NCRT), chemotherapy (CT), and chemoradiotherapy (CRT) groups. Generalized propensity score and inverse probability of treatment weighting (IPTW) were used to reduce the imbalances between groups. <b><i>Results:</i></b> A total of 2,689 patients were enrolled, among whom 1,193 (44.4%) were classified as stage II, 1,371 (51.0%) as stage III, and 125 (4.6%) as stage IV GBC. A total of 1,703, 444, and 542 patients were placed in the NCRT, CT, and CRT groups, respectively. After the IPTW, there were no significant differences in overall survival (OS) between the 3 treatment groups (<i>p &gt;</i> 0.05) in stage II GBC patients. In patients with stage III–IV GBC, the CT group exhibited a superior OS compared to the NCRT group (<i>p &lt;</i> 0.001). In addition, the CRT group exhibited a superior OS compared to the CT (<i>p &lt;</i> 0.001) and NCRT (<i>p &lt;</i> 0.001) groups. For patients with stage III–IV tumors, a nomogram was constructed to predict the survival benefits of adjuvant therapies. <b><i>Conclusion:</i></b> Patients with stage II GBC may not benefit from adjuvant therapy, while patients with stage III–IV GBC were shown to benefit from chemotherapy and chemoradiotherapy. Furthermore, chemoradiotherapy exhibited a superior OS. Nevertheless, the results need to be explained in the context of retrospective studies.
DOI: 10.6084/m9.figshare.5048542.v1
title: Matlab Code for Brownian dynamics from Macromolecular crowding directs the motion of small molecules inside cells

description: It is now well established that cell interiors are significantly crowded by macromolecules, which impede diffusion and enhance binding rates. However, it is not fully appreciated that levels of crowding are heterogeneous, and can vary substantially between subcellular regions. In this article, starting from a microscopic model, we derive coupled nonlinear partial differential equations for the concentrations of two populations of large and small spherical particles with steric volume exclusion. By performing an expansion in the ratio of the particle sizes, we find that the diffusion of a small particle in the presence of large particles obeys an advection–diffusion equation, with a reduced diffusion coefficient and a velocity directed towards less crowded regions. The interplay between advection and diffusion leads to behaviour that differs significantly from Brownian diffusion. We show that biologically plausible distributions of macromolecules can lead to highly non-Gaussian probability densities for the small particle position, including asymmetrical and multimodal densities. We confirm all our results using hard-sphere Brownian dynamics simulations.
DOI: 10.6084/m9.figshare.13247210.v1
title: RNBeads Output

description: Methylation data of HUVEC differentiation assy.
DOI: 10.6084/m9.figshare.19924475.v3
title: C1LinearOscillator01.zip

description: Sample data from undamped oscillator (slow oscillations)
DOI: 10.6084/m9.figshare.21718076.v1
title: mexicana admixture proportions in maize traditional varieties

description: Admixture proportions of 5,684 traditional maize landraces and teosinte. Files show estimated probability of being homozygous or heterozygous for mexicana alleles at each locus.
DOI: 10.25378/janelia.5620687.v3
title: ShuTu: Mouse CA3 pyramidal neuron I 100X Parts 1 - 4

description: Here we provide images of the mouse CA3 pyramidal neuron I (100X) for practicing reconstruction using the ShuTu software platform. The cell was filled and imaged by David Hunt in the Spruston Lab. This is the neuron discussed as the main example in the paper. Due to large sizes of the images files, the data for some neurons are split into multiple parts. After downloading and decompressing, the parts should be combined into one directory.ShuTu (Chinese for "dendrite") is a software platform for semi-automated reconstruction of neuronal morphology. It is designed for neurons stained following patch-clamp recording and biocytin filling/staining. With an additional preprocessing step, it can also handle fluorescence images from confocal stacks. Even when there is only a single neuron in the imaged volume, automated reconstruction is tricky, because of background. Thus, ShuTu was developed to facilitate a two-step process: automated reconstruction, followed by manual correction. The software uses sophisticated algorithms to perform the automated reconstruction, as well as a convenient user interface to facilitate efficient completion of the reconstruction via manual annotation.<br><br>
DOI: 10.15468/dl.bwbyx5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia innesi (Fowler, 1934)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((44.9648 1.2321,45.9851 1.8496,44.9648 1.8496,44.9648 1.2321))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013472-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.1270384.v1
title: Gaussian Job Archive for C3H6I2Zn

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.25442/hku.13413617.v2
title: Supplementary Dataset for the manuscript entitled 'Diel and seasonal variability of CO2 emissions from a semiarid, hard-water reservoir on the Chinese Loess Plateau'

description: This is the Supplementary Dataset for the manuscript entitled 'Diel and seasonal variability of CO2 emissions from a semiarid, hard-water reservoir on the Chinese Loess Plateau'.There are two sheets, including 'Data_pCO2 and FCO2' and 'Data_Environmental factors', in the excel file. The first sheet includes the pCO2 and FCO2 results from the five sampling campaigns in the Nangou Reservoir in 2019, and the second sheet includes the accompanying environmental variables measured in each campaign .
DOI: 10.6084/m9.figshare.16864297.v2
title: Bibliometric data

description: The single file containing all the results of the Web of Science search used in analyzing data in R (bibliometrix package) can also be imported into most reference management software (e.g., Zotero, Endnote) or viewed in a text editor (e.g., bibtex, textpad)<br>
DOI: 10.6084/m9.figshare.14587509.v1
title: 3D particle-imaging-velocimetry around a human sperm cell

description: This data set is provided as an examplary output file from the ImageJ plugin https://github.com/hansenjn/MultiFocalParticleTracker-Complex-3 (Version 0.1.1). <br><br>The file also serves as an examplary input file for the matlab scripts provided in https://github.com/hansenjn/MultifocalImaging-AnalysisToolbox/ - the scripts reveal bead trajectories and a flow map.<br><br>For more details see the linked reference.
DOI: 10.6084/m9.figshare.5472820.v1
title: likert.xlsx

description: this dataset is to be moved to datasets
DOI: 10.26180/28443197.v2
title: DEFAULTS Dataset

description: Facial expression recognition (FER) has emerged as a promising approach to the development of emotion-aware intelligent agents and systems. However, key challenges remain in utilizing FER in real-world contexts, including ensuring user understanding and establishing a suitable level of user trust. We developed a novel explanation method utilizing Facial Action Units (FAUs) to explain the output of a FER model through both textual and visual modalities. We conducted an empirical user study evaluating user understanding and trust, comparing our approach to state-of-the-art eXplainable AI (XAI) methods. Our results indicate that visual AND textual as well as textual-only FAU-based explanations resulted in better user understanding of the FER model. We also show that all modalities of FAU-based methods improved appropriate trust of the users towards the FER model.
DOI: 10.6084/m9.figshare.913610.v3
title: recorded variables

description: Data from reproduction study.
DOI: 10.6084/m9.figshare.14173721.v1
title: An analytical model for the permeability in hydrate-bearing sediments considering the dynamic evolution of hydrate saturation and pore morphology

description: Permeability in laboratory synthesized and naturally occurred hydrate-bearing sediments
DOI: 10.6084/m9.figshare.22548604.v1
title: Supplementary Material for: Impact of Clinical Parameters and Induction Regimens on Peripheral Blood Stem-Cell Mobilization and Collection in Multiple Myeloma Patients

description: Introduction High-dose chemotherapy (HDCT) followed by autologous blood stem-cell transplantation (ABSCT) remains the standard consolidation therapy for newly diagnosed eligible multiple myeloma (MM) patients. As a prerequisite, peripheral blood stem cells (PBSCs) must be mobilized and collected by leukapheresis (LP). Many factors can hamper PBSC mobilization/collection. Here, we provide a comprehensive multiparametric assessment of PBSC mobilization/collection outcome parameters in a large cohort. Methods In total, 790 MM patients (471 [60%] male, 319 [40%] female) who underwent PBSC mobilization/collection during first-line treatment were included. Evaluated PBSC mobilization/collection outcome parameters included the prolongation of PBSC mobilization, plerixafor administration, number of LP sessions, and overall PBSC collection goal/result. Results 741 (94%) patients received cyclophosphamide/adriamycin/dexamethasone (CAD) and granulocyte-colony-stimulating factor (G-CSF) mobilization. Plerixafor was administered in 80 (10%) patients. 489 (62%) patients started LP without delay. 530 (67%) patients reached the PBSC collection goal at the first LP session. The mean overall PBSC collection result was 10.3 (standard deviation [SD] 4.4) x106 CD34+ cells/kg. In a multiparametric analysis, variables negatively associated with PBSC mobilization/collection outcomes were female gender, age &gt;60 years, an advanced ISS stage, and local radiation pre-/during induction, but not remission status post-induction. Notably, the identified risk factors contributed differently to each PBSC mobilization/collection outcome parameter. In this context, compared to all other induction regimens, lenalidomide-based induction with/without antibodies negatively affected only the number of LP sessions required to reach the collection goal, but no other PBSC mobilization/collection outcome parameters. In contrast, the probability of reaching a high collection goal of ≥6 x106 CD34+ cells/kg body weight was higher after lenalidomide-based induction compared to VCD/PAD or VAD – taking into account, that a higher G-SCF dosage was given in approximately one third of patients receiving lenalidomide-based induction with/without antibodies. Discussion/Conclusion Considering the identified risk factors in the clinical setting can contribute to optimized PBSC mobilization/collection. Moreover, our study demonstrates the necessity for a differentiated evaluation of PBSC mobilization/collection outcome parameters.
DOI: 10.6084/m9.figshare.8798051.v1
title: Proteogam02_Supplementary File 5_COI.pdf

description: COI Sequences and Phylogenetic tree