cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.x495fa
title: Occurrence Download

description: A dataset containing 157 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ormosia fastigiata Tul."
 ]
}

 The dataset includes 157 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0189987-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5ebzd3
title: Occurrence Download

description: A dataset containing 1248 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 {
 "or" : [
 "Country is Cuba",
 "Country is Japan",
 "Country is China",
 "Country is Chinese Taipei",
 "Country is United States of America",
 "Country is Canada",
 "Country is Korea (Democratic People’s Republic of)",
 "Country is Korea, Republic of",
 "Country is Russian Federation",
 "Country is Mongolia"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Pseudotsuga Carrière",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1248 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025700-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d86des
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Akodon lindberghi Hershkovitz, 1990"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069422-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.39r9vq
title: Occurrence Download

description: A dataset containing 547 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Platanus occidentalis L.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 547 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0165759-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qekfo0
title: Occurrence Download

description: A dataset containing 8957407 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Anillamiento SEO_Bird ringing"
 ]
}

 The dataset includes 8957407 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025701-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s79cvu
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Habenaria baeuerlenii F.Muell. & Kraenzl."
 ]
}

 The dataset includes 37 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014613-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fhzr7q
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantago eriopoda Torr.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 115 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0165746-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v1kcni
title: Occurrence Download

description: A dataset containing 4920 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Camelus Linnaeus, 1758"
 ]
}

 The dataset includes 4920 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025708-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4z3665
title: Occurrence Download

description: A dataset containing 595 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Helichrysum heliotropifolium (Lam.) DC."
 ]
}

 The dataset includes 595 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014619-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ycqyp
title: Occurrence Download

description: A dataset containing 412 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Phytelephas aequatorialis Spruce"
 ]
}

 The dataset includes 412 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010593-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q8mhwf
title: Occurrence Download

description: A dataset containing 89 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Iris boissieri Henriq."
 ]
}

 The dataset includes 89 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025706-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rxeujp
title: Occurrence Download

description: A dataset containing 785 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Helichrysum herbaceum (Andrews) Sweet"
 ]
}

 The dataset includes 785 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014632-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ydolsm
title: Occurrence Download

description: A dataset containing 62152 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Canadian Museum of Nature Fish Collection"
 ]
}

 The dataset includes 62152 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049620-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5wj9vp
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Benzingia hirtzii Dodson"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0143656-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y5hhns
title: Occurrence Download

description: A dataset containing 26444 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gypaetus barbatus (Linnaeus, 1758)"
 ]
}

 The dataset includes 26444 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025706-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g3xd72
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ephedraceae",
 "Country is Canada",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 25 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035443-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5bakue
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ephedraceae",
 "Country is Greenland",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035445-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aaf984
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ephedraceae",
 "Country is Iceland",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035446-240906103802322/datasets/export for details.
DOI: 10.15468/dl.x2uu2r
title: Occurrence Download

description: A dataset containing 1516 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lacerta viridis (Laurenti, 1768)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018"
 ]
}

 The dataset includes 1516 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035444-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wfkhea
title: Occurrence Download

description: A dataset containing 1764 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Natrix tessellata (Laurenti, 1768)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018"
 ]
}

 The dataset includes 1764 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035447-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.20350/digitalcsic/16526
title: NWIberian_DO_1969_2018_V02

description: The dataset contains 3 files.-- Information on the methodology and quality control can be found in the files description and references included in the README_NWIberian_DO_1969_2018_V02.txt file
description: The dataset NWIberian_DO_1969_2018_V02 contains: averaged yearly data from compiled datasets of dissolved oxygen concentration, temperature and salinity at the 27.1 isopycnal level from different cruises between 1969 and 2018, and covering the area 40°- 43°N and 9°-11°W; time series of the potential drivers of the dissolved oxygen change in the region of ENACW formation (45°- 49°N and 9°-20°W) and off the NW Iberian coast (40°- 43°N and 9°-11°W); distributions of sea surface temperature over the area 39°- 55°N and 6°-30°W and averaged over differente time periods; and table with examples from other upwelling regions in terms of concentration and trends of dissolved oxygen
description: ENACWsptseries19692018V02.csv.-- SST_NAtlantic.csv.-- Oxygen_upwelling_systems.csv.-- README_NWIberian_DO_1969_2018_V02.txt
DOI: 10.20350/digitalcsic/16520
title: FEROS spectra for 3 giants exoplanets [Dataset]

description: We report the discovery and characterization of three giant exoplanets orbiting solar-analog stars, detected by the TESS space mission and confirmed through ground-based photometry and radial velocity measurements taken at La Silla observatory with FEROS. TOI-2373b is a warm Jupiter orbiting its host star every ~13.3days, and is one of the most massive known exoplanet with a precisely determined mass and radius around a star similar to the Sun, with an estimated mass of mp=9.3_-0.2_^+0.2^Mjup and a radius of rp=0.93_-0.2_^+0.2^Rjup. With a mean density of {rho}=14.4_-1.0_^+0.9^g/cm^3^, TOI-2373b is among the densest planets discovered so far. TOI-2416b orbits its host star on a moderately eccentric orbit with a period of ~8.3days and an eccentricity of e=0.32_-0.02_^+0.02^. TOI-2416 bis more massive than Jupiter with mp=3.0_-0.09_^+0.10^Mjup, however is significantly smaller with a radius of rp=0.88_-0.02_^+0.02^Rjup, leading to a high mean density of {rho}=5.4_-0.3_^+0.3^g/cm^3^. TOI-2524b is a warm Jupiter near the hot Jupiter transition region, orbiting its star every ~7.2days on a circular orbit. It is less massive than Jupiter with a mass of mp=0.64_-0.04_^+0.04^Mjup, and is consistent with an inflated radius of rp=1.00_-0.03_^+0.02^Rjup, leading to a low mean density of {rho}=0.79_-0.08_^+0.08^g/cm^3^. The newly discovered exoplanets TOI-2373b, TOI-2416b, and TOI-2524b have estimated equilibrium temperatures of 860_-10_^+10^K, 1080_-10_^+10^K, and 1100_-20_^+20^K, respectively, placing them in the sparsely populated transition zone between hot and warm Jupiters.
description: FEROS is an echelle spectrograph mounted on the 2.2m MPG/ESO 34 telescope at ESO's La Silla Observatory, Chile. FEROS is a highly efficient spectrograph with a resolving power of R=48000, covering the visible wavelength range from ~350 to ~920nm. During the time from 2020 February to 2021 March, we obtained 16 FEROS spectra for TOI-2373, 17 for TOI-2416, and eight for TOI-2524.
DOI: 10.20350/digitalcsic/16523
title: MOPREDAS_Extreme_Daily_Precipitation_Catalogue_1916-2022, v.1.0.0. [Dataset]
title: Catálogo de los eventos extremos de precipitación diaria en España (periodo 1916-2022)

description: [ES] El catálogo incluye tantos las fechas de los eventos como las del día previo y posterior en un listado junto al mapeado de cada uno de ellos en cartografías individuales (3 por cada evento) donde se incluyen todos los observatorios en la misma fecha que registraron el máximo mensual de precipitación, fuese cual fuese su magnitud. [ES] The catalogue includes the dates of the events as well as those of the previous and following day in a list together with the mapping of each of them in individual cartographies (3 for each event) where all the observatories on the same date that recorded the maximum monthly precipitation, whatever its magnitude, are included.
description: [ES] "MOPREDAS_Extreme_Daily_Precipitation_Catalogue_1916-2022, v.1.0.0. [Dataset]" es un catálogo de eventos de lluvia extrema sucedidos a escala diaria superiores a 100 mm y 200 mm obtenido a partir de los Libros Resúmenes Anuales, editados por los sucesivos Servicios Meteorológicos de España en el periodo 1916-1950 y los fondos documetales del Banco Nacional de Datos Climáticos de AEMET.
description: [EN] “MOPREDAS_Extreme_Daily_Precipitation_Catalogue_1916-2022, v.1.0.0. [Dataset]” is a catalog of daily extreme rainfall events greater than 100 mm and 200 mm obtained from the Annual Summary Books, edited by the successive Meteorological Services of Spain in the period 1916-1950 and the documentary collections of the National Climatic Data Bank of AEMET.
DOI: 10.20350/digitalcsic/16522
title: Dataset - Sodium lanthanide tungstate-based nanoparticles as bimodal contrast agents for in vivo high-field MRI and CT imaging

description: Research on High-Field Magnetic Resonance Imaging (HF-MRI) has increased in recent years, aiming to improve diagnosis accuracy by increasing the signal-to-noise ratio and hence image quality. Conventional contrast agents (CAs) have important limitations for HF-MRI, with the consequent need for the development of new CAs. Among the most promising alternatives are those based on Dy3+ or Ho3+ compounds. Notably, the high atomic number of lanthanide cations would bestow a high capability for X-ray attenuation to such Dy or Ho-based compounds, which would allow them to be also employed as CAs for X-ray computed tomography (CT). In this work, we have prepared uniform NaDy(WO4)2 and NaHo(WO4)2 nanoparticles NPs, which were dispersible under conditions that mimic the physiological media and were nontoxic for cells, meeting the main requirements for their use in vivo. Both NPs exhibited satisfactory magnetic relaxivities at 9.4T, thus making them a promising alternative to clinical CAs for HF-MRI. Furthermore, after their intravenous administration in tumor-bearing mice, both NPs exhibited significant accumulation inside the tumor at 24 h, attributable to passive targeting by the Enhanced Permeability and Retention (EPR) effect. Therefore, our NPs are suitable for detection of tumors through HF-MRI. Finally, NaDy(WO4)2 NPs showed a superior X-ray attenuation capability than iohexol (commercial CT CA), which, along with their high r2 value, makes them suitable as dual-probe for dual HF-MRI and CT imaging, as demonstrated by in vivo experiments conducted using healthy mice.
DOI: 10.20350/digitalcsic/16521
title: PhageHostLearn - training and test data

description: This Zenodo repository contains all the training and test data necessary to reproduce the analyses in our manuscript "Prediction of Klebsiella phage-host specificity at the strain level", including raw genome sequences, processed phage RBPs and Klebsiella K-loci sequences and the phage-host interaction data. The code related to these data can be found in our GitHub repository: https://github.com/dimiboeckaerts/PhageHostLearn.
DOI: 10.20350/digitalcsic/16518
title: Dataset of Do Barn Swallow nestlings incur an oxidative cost of begging
title: complete_dataset_Fuertes_Recuero_etal
title: SwallowsJOrn2024

description: [Description of methods used for collection/generation of data] Refer to Methods section in Fuertes-Recuero et al. (2024) https://doi.org/10.1007/s10336-023-02090-8
description: [Methods for processing the data] Refer to Methods section in Fuertes-Recuero et al. (2024) https://doi.org/10.1007/s10336-023-02090-8
description: complete_dataset_Fuertes_Recuero_etal
DOI: 10.20350/digitalcsic/16517
title: Polysorbate 80-fed, carboxymethylcellulose-fed and control microbiota DataSet

description: [Description of methods used for collection/generation of data] The three colon reactors (R1, R2 and R3) of the BFBL gut simulator were inoculated (1%) with child (5-7 years old) pooled fecal sample. After the microbiota stabilization, polysorbate 80 or carboxymethylcellulose were added into the BFBL simulator at increasing concentrations (1, 3 and 5 g/L in case of polysobrbate 80 or 0.3, 1, 3 and 5 g/L in case of carboxymethylcellulose), three times per day during 1 week for each concentration. In addition, another run without additives feeding (control) was carried out for the same period of time to assess changes due to the experimental conditions. During the experimental set up, samples were collected every day from the three colon reactors and centrifuged (11,200 ×g during 10 min at 4 °C), and the pellet and supernatant were stored separately. Bacterial genomic DNA from the pellet was extracted according to the manufacturer’s instruction of the EZNA® Bacterial DNA Kit (Omega Biotek) and using a FastPrep equipment for mechanical lysis (Bio 101 FastPrep FP120, Savant Instruments). DNA samples were sent to Novogene Europe (Cambridge, UK) for sequencing the V3-V4 region of the 16S rRNA gene amplified by using 341F (5′- CCTAYGGGRBGCASCAG-3′) and 806R (5′-GGA CTACNNGGGTATCTAAT-3′) primers. The PCR products were sequenced on a paired-end Illumina platform (NovaSeq 6000, Illumina) to generate 250 bp paired-end raw reads.
description: [Dictionaries/codebooks used] The first letter of the code of the samples corresponding to the control microbiota starts with C. Then, R1, R2 or R3 is added, depending on the reactor of the BFBL simulator from which the sample comes. And at the end, the time is added, corresponding to the last 3 days of each week. For polysorbate-fed and carboxymethylcellulose-fed microbiota, the code starts with R1, R2, R3, depending on the reactor the sample comes from, followed by CMC or Tw depending on whether feeding is with carboxymethylcellulose or polysorbate 80, respectively. Then, doses (g/L) are added: stabilization (stab), 0.3, 1, 3, and 5 in case of carboxymethylcellulose; and Stab, 1, 3 and 5 in case of polysorbate 80. At the end, the number of replicates corresponding to the last 3 days of each treatment (1, 2 or 3) is added.
description: Polysorbate 80-fed, carboxymethylcellulose-fed and control microbiota
DOI: 10.20350/digitalcsic/16515
title: Data from manuscript Impact of paprika and dextrose addition on dry cured loins microbiota and its effect on aroma development [DATASET]

description: Physic-chemical parameters, microbial counts data, free amino acids content and volatile compounds data.
description: The impact of paprika and dextrose addition on the surface of dry cured loins was analysed attending to differences in microbiota composition and aroma profile. Three different types of loins containing either dextrose (D), paprika (P) or a mixture of dextrose and paprika (DP) were manufactured. The loins were characterized using physic-chemical parameters, free amino acids, volatile compounds and aroma sensorial analysis, as well as applying microbiological counts and metagenomics of the 16S rRNA gene and its rDNA region.
DOI: 10.20350/digitalcsic/16513
title: Annotated genes Aphanius iberus genome as part of "De novo genome hybrid assembly and annotation of the endangered and euryhaline fish Aphanius iberus (Valenciennes, 1846) reveals critical genes on salinity adaptation"

description: [Description of methods used for collection/generation of data] A hybrid assembly approach was employed, integrating PacBio long-read sequencing with Illumina short-read data, an extensive functional annotation of the genome is provided by using AUGUSTUS with InterProScan and Sma3s.
description: [Methods for processing the data] Software MaSuRCA and HASLR. Also Transdecoder to predict candidate coding regions.
description: The sequencing of non-model species has increased exponentially in recent years, largely due to the advent of novel sequencing technologies. In this study, we construct the reference genome of the Spanish toothcarp (Aphanius iberus (Valenciennes, 1846)), a renowned freshwater fish species. A hybrid assembly approach was employed, integrating PacBio long-read sequencing with Illumina short-read data. In addition to the assembly, an extensive functional annotation of the genome is provided by using AUGUSTUS, and two different approaches (InterProScan and Sma3s). The integration of genomic data with predicted genes presents future research opportunities across multiple disciplines, such us physiology, reproduction, disease, and opens up new avenues for future studies in comparative genomic studies.
description: Annotation_Aphanius_iberus.xlxs
DOI: 10.5281/zenodo.13861233
title: hypsolebias_lulai_spades_01.fasta.gz
DOI: 10.5281/zenodo.13861234
title: hypsolebias_lulai_spades_01.fasta.gz
DOI: 10.15468/dl.yskdfn
title: Occurrence Download

description: A dataset containing 211 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vipera ammodytes (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018"
 ]
}

 The dataset includes 211 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035451-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.