cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23927415.v1
title: Supplementary Material for: [18F] FDG PET/MR-defined EMVI predicts distant metastasis and reflects strong tumor invasiveness in rectal cancer

description: Introduction: Extramural vascular invasion in patients with rectal cancer is a poor prognostic factor associated with distant metastasis; thus, accurate preoperative diagnosis is important. However, the accurate detection of extramural vascular invasion using magnetic resonance imaging is difficult, and an improved diagnostic modality is required. In addition, the factors involved in the formation of EMVI remain unclear. In this study, we aimed to examine the ability of [18F] FDG PET/MRI to detect EMVI and elucidate the factors involved in EMVI. Methods: Thirty-one patients with rectal cancer were enrolled in this study between 2017 and 2021. We preoperatively evaluated the pelvic 18F-fluorodeoxyglucose positron emission tomography/ magnetic resonance imaging([18F] FDG PET/MRI) to detect extramural vascular invasion ([18F] FDG PET/MR-defined EMVI: pmrEMVI). To investigate the factors related to pmrEMVI, we confirmed the desmoplastic reaction and TWIST expression in the primary lesions of rectal cancer and examined its relationship with pmrEMVI. Results: Six of the 31 patients were pmrEMVI-positive. Four pmrEMVI-positive patients had distant metastases. The levels of immature desmoplastic reaction and TWIST1 expression were significantly higher in cases with pmrEMVI positivity. Conclusion: PmrEMVI is a useful biomarker for predicting distant metastasis. In addition, pmrEMVI was significantly correlated with factors related to tumor invasiveness.
DOI: 10.5281/zenodo.14054315
title: Dataset for dental microwear texture analysis of wild mammals (Amami rabbit and Ryukyu long-furred rat) from Amami-Oshima Island, Japan

description: This dataset was used in the publication entitled "Feeding ecology of the Amami rabbit (Pentalagus furnessi) and the Ryukyu long-furred rat (Diplothrix legata) inferred from dental microwear texture analysis" in "Mammal Study".

"Amami rabbit_60x60 cut SUR files & analysis MNT files.zip" includes 160 surface scans after trimming (60x60) in ".sur" format and 160 surface texture analysis files in ".mnt" format. 

"Ryukyu long-furred rat_80x80 cut SUR files & analysis MNT files.zip" includes 74 surface scans after trimming (80x80) in ".sur" format and 74 surface texture analysis files in ".mnt" format. 

".mnt" files can be opened with Mountains Map ver. 9 or later.
DOI: 10.5281/zenodo.14054316
title: Dataset for dental microwear texture analysis of wild mammals (Amami rabbit and Ryukyu long-furred rat) from Amami-Oshima Island, Japan

description: This dataset was used in the publication entitled "Feeding ecology of the Amami rabbit (Pentalagus furnessi) and the Ryukyu long-furred rat (Diplothrix legata) inferred from dental microwear texture analysis" in "Mammal Study".

"Amami rabbit_60x60 cut SUR files & analysis MNT files.zip" includes 160 surface scans after trimming (60x60) in ".sur" format and 160 surface texture analysis files in ".mnt" format. 

"Ryukyu long-furred rat_80x80 cut SUR files & analysis MNT files.zip" includes 74 surface scans after trimming (80x80) in ".sur" format and 74 surface texture analysis files in ".mnt" format. 

".mnt" files can be opened with Mountains Map ver. 9 or later.
DOI: 10.6084/m9.figshare.21893808.v2
title: EWELD

description: <br> This is the dataset for the scientific data paper EWELD: A Large-Scale Industrial and Commercial Load Dataset in Extreme Weather Event
DOI: 10.6084/m9.figshare.16487907.v1
title: Magnetism and hematite data

description: The environmental magnetism and diffuse reflectance spectroscopy data from the eolian red clay sequence (~51-39 Ma) in the Altyn Mountains of the northeastern Tibetan Plateau
DOI: 10.6084/m9.figshare.27168981.v1
title: Supplemental Table S1

description: Supplemental Table S1. Rate of change of FRAP by each unit increase in days in milk (DIM) estimated by the first derivatives of the observed trajectory. Start and end are the DIM interval where the first derivatives are estimated. The coefficient is the estimated rate of change, with related standard error (SE).
DOI: 10.6084/m9.figshare.7571411.v1
title: Nine good things about open science (and one bad thing)

description: 20 minute lightning talk presentation given by Alasdair Rae, from University of Sheffield, at the Better Science through Better Data 2018 event. The video recording, and scribe are included.
DOI: 10.6084/m9.figshare.28869017.v2
title: Microstructure & physicochemical properties dataset of NaCl-based salt mixtures for concentrating solar power

description: We create two Excel files in our dataset. The details of the thermal expansion coefficient, thermal conductivity, specific enthalpy of fusion, specific capacity, density, and viscosity for 21 NaCl-based molten salt mixtures in different temperature ranges are recorded in an Excel file named <i>physicochemical properties dataset</i>. And another Excel file named <i>microstructure dataset </i>contains the details of the ionic self-diffusion coefficient, coordination bond angle, coordination bond length, and coordination number of different ion pairs for the mixtures in different temperature ranges.
DOI: 10.6084/m9.figshare.8796344.v2
title: Thermal-hydro coupling model of immiscible two-phase flow in heterogeneous porous structures at high temperature

description: This file includes the figures, tables and equations that underlie the conclusions of our paper.
DOI: 10.6084/m9.figshare.21805167.v1
title: Code and dataset for "Characterizing spatial, diurnal, and seasonal patterns of agricultural irrigation expansion-induced cooling in Northwest China from 2000 to 2020"

description: Chao Zhang, zhangc.20b@igsnrr.ac.cn Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences <br> Here we provide the code and dataset to reproduce the results of the following paper: Zhang, C., Ge, Q., Dong, J., Zhang, X., Li, Y., Han, S., 2023. Characterizing spatial, diurnal, and seasonal patterns of agricultural irrigation expansion-induced cooling in Northwest China from 2000 to 2020. Agricultural and Forest Meteorology. 109304. https://doi.org/10.1016/j.agrformet.2022.109304
DOI: 10.6084/m9.figshare.19499810.v1
title: patches and local annotations, slide 061, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.21173734.v2
title: Data and code for "Deforestation intensifies daily temperature variability in the northern extratropics"

description: The dataset related to the figures in the maintext and Supplementary Information. <br> Contact: junge@nju.edu.cn
DOI: 10.15468/dl.v6xrex
title: Occurrence Download

description: A dataset containing 4035 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Hyppa rectilinea (Esper, 1788)"
 ]
}

 The dataset includes 4035 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009485-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.2066568.v1
title: Characterising the zonally asymmetric features of the Southern Hemisphere extratropical circulation and their influence on regional climate variability: supplementary metadata

description: This page contains supplementary material relating to the following PhD thesis:Irving D (2016). Characterising the zonally asymmetric features of the Southern Hemisphere extratropical circulation and their influence on regional climate variability. PhD thesis, University of Melbourne.In particular, it contains metadata files (.met) for each of the figures in that thesis, outlining the history of command line entries that were executed from initial data download right up to the generation of the figure. A version controlled (using Git) repository of the code referred to in those .met files is also included (github_DamienIrving_climate-analysis.zip), however readers are encouraged to view that code at the GitHub repository linked to below instead (because then they can view any subsequent improvements to the code and/or submit suggested improvements / pull requests). It should be noted that it is my daily repository, meaning there is code in there that does not directly relate to the paper - the .met files explain which code is relevant.The motivation for this approach to publishing reproducible computational research is outlined in the thesis and also at:Irving D (in press). A minimum standard for publishing computational results in the weather and climate sciences.<em> Bulletin of the American Meteorological Society.</em>doi:10.1175/BAMS-D-15-00010.1.
DOI: 10.6084/m9.figshare.22266211.v1
title: data from Aho et al. 2023 "Can increased prenatal exposure to thyroid hormones alter physiology and behaviour in the long-term? Insights from an experimental study in Japanese quails."

description: Dataset from Aho et al. 2023 "Can increased prenatal exposure to thyroid hormones alter physiology and behaviour in the long-term? Insights from an experimental study in Japanese quails."
DOI: 10.6084/m9.figshare.28633871.v1
title: <b>Effects of Prothrombin on Podocytopathy and Proteinuria in Glomerular Disease - Supporting Data Values</b>

description: Supporting Data Values for<br>"Effects of Prothrombin on Podocytopathy and Proteinuria in Glomerular Disease" published in JASN: the Journal of the American Society of Nephrology, doi: pending
DOI: 10.6084/m9.figshare.25637826.v1
title: Supplementary Material for: Growth hormone therapy: Comparison of short- and long-term outcomes between children with Growth Hormone Deficiency and Small for Gestational Age

description: Introduction
Direct comparisons of both short-term and long-term auxological outcome of growth hormone therapy (GHT) between growth hormone deficiency (GHD) and small for gestational age (SGA) are scarce.
Methods
103 patients with GHD and 53 patients with SGA treated at our tertiary center were investigated. Short-term and long-term outcomes were compared between these groups using multi-variable linear regression models with adjustment for age, sex and height at therapy start, also allowing for sex-specific group comparisons.
Results
Mean delta height standard deviation scores (SDS) after 1 year of treatment was significantly higher in GHD (0.90, CI 0.82 to 0.99) compared to SGA (0.67, C I 0.54 to 0.79)(p= 0.003) with no sex difference. As expected, the mean increase in height SDS at final height (FH) was significantly higher in GHD (2.21, CI 2.00 to 2.42) compared to SGA (1.05, CI 0.75 to 1.35)(p&lt;0.001), leading to a target height corrected FH of -0.39 SDS (CI -0.62 to -0.15) in GHD and -1.22 SDS (CI-1.57 to -0.87) in SGA ( p&lt;0.001). Girls with GHD had a better long-term outcome, as did boys with SGA when compared to the respective opposite sex. The cut-off of delta height of 0.5 SDS during the first year had a low sensitivity to detect long-term non-responders. We found a relation between short-term and long-term outcome in GHD, but not in SGA (adjusted R2 = 0.66 vs. 0.01).
Conclusion
In contrast to GHD, we observed practically no relationship between 1st-year and long-term outcome in SGA patients treated with GH.
DOI: 10.6084/m9.figshare.12807610.v1
title: CYT UCSC hub hg38

description: Datasets used in the hg38 UCSC session that contains the results from the Nature Genetics article "The impact of proinflammatory cytokines on the β-cell regulatory landscape provides insights into the genetics of type 1 diabetes".
DOI: 10.6084/m9.figshare.9992582.v1
title: Aligned nrLSU dataset of Inocybe sect. Rimosae s.s. subclade A

description: This is the aligned nuclear 28S rRNA gene (nrLSU) dataset of <i>Inocybe </i>sect. <i>Rimosae </i>s.s. subclade A, used for molecular phylogenetic reconstruction with IQ-TREE under partitioned models. <br><br> <b>New species of <i>Inocybe</i> sect. <i>Rimosae</i> from Pakistan revealed by multi-locus phylogenetic reconstruction</b> Malka Saba, Danny Haelewaters, Donald H. Pfister, Abdul Nasir Khalid<br> <b>Abstract</b> During fungal surveys between 2012 and 2014 in pine-dominated forests of the western Himalayas in Pakistan, several collections of <i>Inocybe</i> (Agaricales, Inocybaceae) were made. These were documented based on morphological and molecular data. During this work, three new species came to light, which are here formally described as <i>Inocybe brunneoumbonata</i>, <em>I. pinophila,</em> and <em>I. triacicularis</em>. These species are part of sect. <i>Rimosae</i> s.s. and belong to or are closely related to <i>Rimosae</i> s.s. subclade A. Macro- and micro-morphological descriptions, illustrations, and molecular phylogenetic reconstructions of the studied taxa are provided. The new species are differentiated from their close relatives by basidiospore size and coloration of basidiomata. Molecular phylogenetic relationships are inferred using ITS (ITS1–5.8S–ITS2), nrLSU, and mtSSU sequence data. All three newly described taxa likely share an ectomycorrhizal association with trees in the genus <i>Pinus</i>. <b>Keywords</b> 3 new taxa, ectomycorrhizal fungi, Inocybaceae, Pakistan, phylogeny, <i>Pinus roxburghii</i>, taxonomy<br>
DOI: 10.6084/m9.figshare.13299797.v1
title: Klang Dataset

description: Trouble Tickets
DOI: 10.6084/m9.figshare.19533229.v1
title: Factors Affecting Teachers’ Social Media Use during Covid-19

description: The survey was adapted from prior studies. It was validated through PLS-SEM measurement model
DOI: 10.6084/m9.figshare.26348437.v1
title: Fig.4C

description: "Bioinspired Designer DNA NanoGripper for Virus Sensing and Potential Inhibition": The dataset for the plot in <b>Fig. 4C</b>.
DOI: 10.6084/m9.figshare.24969993.v2
title: PTM Splicing Analysis: Supplementary Data

description: This contains all raw data and analysis for the manuscript titled "A systematic analysis of the effects of splicing on the diversity of post-translational modifications in protein isoforms<b>"</b>. Folders contain data on PTMs projected onto alternative isoforms using our computational pipeline, as well as data generated from the analysis of this information. All data necessary to replicate the analysis and figures in this work can be found here, unless it can be downloaded elsewhere from an external database (TCGA, PhosphoSitePlus, etc.). Up to date as of January 17, 2025 (corresponds to BioRxiv update)
DOI: 10.6084/m9.figshare.28136315.v1
title: Satellite based AR catalog and the associated IVT file.

description: Datasets for Ma et al. (2022)
DOI: 10.6084/m9.figshare.28677092.v1
title: Eddy lifetime dataset

description: The all_data_random file is the historical data, the all_label_random file is the remaining lifetime, and the all_life_random file is the lifetime of the eddy.
DOI: 10.6084/m9.figshare.25193864.v1
title: FINAL EXTRACTION.xlsx

description: This is the Final Meta-Analysis Extraction Excel file for the article:Lidströmer et al, Systematic review and meta-analysis for a Global Patient co-Owned Cloud (GPOC), Nature Communications, DOI: 10.1038/s41467-024-46503-5.
DOI: 10.6084/m9.figshare.27051424.v1
title: Audio Datasets of belt conveyor rollers in mines

description: The dataset for this project comprises audio recordings of the operational states of belt conveyor rollers in a mining environment, covering three conditions: normal roller operation, roller shell cracking, and roller breakage. Combined with machine learning models, this dataset can be used for real-time diagnosis of roller operational states. The database contains two main folders: <b>dataset</b> and <b>code</b>.The dataset folder includes three subfolders:<b>wav: </b>Contains 19 WAV files recorded from 19 microphones, capturing the audio data of belt conveyor rollers in a mining site. Of these, 17 files represent normal roller operation, 1 file captures the audio of a roller with shell cracking, and 1 file captures the audio of a roller with complete breakage.<b>csv_dataset: </b>Contains 10 subfolders, each representing audio feature datasets extracted from the WAV files with frame lengths ranging from 100ms to 1000ms. Each subfolder contains 19 CSV files, corresponding to the 19 audio recordings. The feature datasets within different frame-length subfolders should not be used interchangeably.<b>test_dataset:</b> Contains 17 audio feature datasets with a 200ms frame length. These datasets include features from 17 normal operation recordings combined with features from the roller shell cracking and roller breakage recordings. The combined datasets are shuffled 100 times to ensure even distribution of features from each operational state. This dataset was used for validating the accuracy and usability of the audio feature datasets for real-time monitoring of roller states in the paper.The code folder contains two sets of code:<b>Matlab Code: </b>This code extracts 25 audio features from the WAV files and generates the 17 audio feature datasets using a 200ms frame length.<b>Python Code: </b>This code validates the accuracy and usability of the audio feature datasets in real-time monitoring of belt conveyor roller operational states.This dataset and code combination supports the real-time diagnosis of belt conveyor roller conditions and provides a foundation for validating the effectiveness of audio features in fault detection.
DOI: 10.6084/m9.figshare.20407368.v2
title: Monkeyflower reproductive boundaries - glaucescens and guttatus

description: Data used to characterize species boundaries between Mimulus glaucescens and M. guttatus
DOI: 10.6084/m9.figshare.25606143.v2
title: Literature search data

description: Literature search conducted on September 20, 2023 of Web of Science and Scopus databases for literature regarding North American sturgeon thermal limits, effects, and optima. Tabs include search terms and results, and how the results were processed through each iteration to the list of unique data reports.
DOI: 10.6084/m9.figshare.5125663.v1
title: Supplementary Material for: Parenchyma, Pipes, Perfusion and Penumbra Imaging: The Multimodal CT in Wake-Up Stroke Basilar Thrombosis

description: Medicine
DOI: 10.6084/m9.figshare.5767134.v1
title: Data_MetNet_Castilloetal

description: <br><b>Data01_Castilloetal2017_BSI_MetNet.csv</b> This dataset has the Broad Sense Incidence (BSI) calculated from 20,457 occurrences of source (rows) and acceptor (columns) organs pair.Data is from: -diSibio and French 2008 (7487 occurrences) -Abrams et al 2006 (2464 occurrences) -Bubendorf et al. 2000 (1147 occurrences)-Saitoh et al. 1983 (4479 occurrences)-Shinagare et al 2011 (313 occurrences) -Lamovec and Brackko 1991 (848 occurrences) -Patel et al 1978 (1212 occurrences). <br> <b>Data02_Castilloetal2017_BloodSupply.csv</b> This dataset corresponds to a incidence matrix for organs sharing supply vessels. <br> <b>Data03_Castilloetal2017_BloodDrain.csv</b> This dataset corresponds to a incidence matrix for organs sharing drainage vessels. <br> <b> Data04_Castilloetal2017_CorData.csv</b> This dataset contains data used for correlations. Origin of the estimated values are included in supplementary methods, values corresponding to network connectivity and metastatic incidence are from this study.
DOI: 10.25375/uct.7645043.v1
title: Systematic study of liquid and solute flow in packed rock beds in the context of heap leaching: residence time distribution

description: The data presents the residence time distribution (RTD) studies performed on packed rock beds. Particle size distribution of rock beds and irrigation flow rates were varied. The measurements were performed using a conductivity meter.<br>"RTD-meta.csv" presents a general information about each experiment.<br>"RTD-calibration-measurements.csv" and "RTD-calibration-fit.csv" contains the information on conductivity meter calibration.<br>"Bouffard-U10Z058.csv" is the table of RTD experiments from Bouffard and Dixon (2001), obtained by tracing the graphs in those publications.<br>"RTD-analysis.nb" is Mathematica notebook that goes through the transformation of the raw RTD data (voltage vs time) to the dimensionless F- and E-curves.
DOI: 10.6084/m9.figshare.13139699.v1
title: Global Snow Drought Data Set - Standardized Snow Water Equivalent Index (SWEI)

description: This data set contains information about snow droughts (or deficits in snow water equivalent, SWE) and their characteristics (e.g., duration and intensity) across the globe. The snow drought information is derived using SWE from a global reanalysis over 1980-2018, which was standardized using methods described in Huning and AghaKouchak (2020a). We provide the 3-month standardized snow drought index (SWEI) fields used to characterize and monitor snow droughts in the NetCDF4 (classic) format. Changes in snow drought characteristics for seven study regions around the world: the western United States, Europe, Hindu Kush and Central Asia, greater Himalayas, eastern Russia, extratropical Andes, and Patagonia are also provided.<br>For more information about the standardized SWE index (SWEI), refer to Huning and AghaKouchak (2020a).<br>This data set provides one SWEI file for each study year. The following data flags/codes are used in the SWEI files:FillValue: 9.9692e+36 (No data, i.e., missing value.)MissingValue: Same as FillValueNoSnowPermValue: -999 (No SWEI value is ever assigned to the grid cell. Refer to Huning and AghaKouchak (2020a).)NoSnowTempValue: -888 (SWEI value not assigned to the grid cell during this time of the year. Refer to Huning and AghaKouchak (2020a).)<br>As a condition of using data from this collection, you must cite this data set/collection and the corresponding publication: 1) Huning, L.S., and AghaKouchak, A. (2020b): Global Snow Drought Data Set, <i>figshare</i>, Collection, https://doi.org/10.6084/m9.figshare.c.5055179.<br>2) Huning, L.S., and AghaKouchak, A. (2020a): Global Snow Drought Hot Spots and Characteristics, <i>Proceedings of the National Academy of Sciences</i>, 117(33), 19753-19759, https://doi.org/10.1073/pnas.1915921117.
DOI: 10.6084/m9.figshare.28734347.v1
title: Dataset

description: Dataset of the manuscript.
DOI: 10.6084/m9.figshare.11560110.v1
title: Full Map of Digitised Newspaper Metadata

description: A full map of metadata used by the various digitised newspaper databases discussed in the <i>Atlas of Digitised Newspapers and Metadata</i><br>
DOI: 10.6084/m9.figshare.27157086.v1
title: Age, Size, and Sex information of the four-rayed rattail <i>Coryphaenoides subserrulatus</i> from the Chatham Rise, New Zealand

description: Population dynamic of bycatch from deep-sea fisheries are largely unexplored, due to having little or no commercial value. This study examines the age-based growth parameters of the four-rayed rattail <i>Coryphaenoides subserrulatus</i> from the Chatham Rise, New Zealand. Specimens were collected as bycatch from four trawl stations during an orange roughy (<i>Hoplostethus atlanticus</i>) stock assessment. Age determination was conducted using transverse otolith sections, with results revealing a lifespan ranging from 2 to 27 years. The study identified sex-specific differences in growth, with females reaching larger size at equivalent age than males. The sampled population was female dominated with a sex ratio of 1.66 females to 1 male. Von Bertalanffy growth function analysis showed asymptotic lengths of 345.69 mm for females and 284.8 mm for males. Annual mortality rate was estimated at 15.02% (yr<sup>-1</sup>), indicating a stable population under unfished conditions. <i>This study provides a comprehensive population dynamics profile of C. subserrulatus in New Zealand waters</i>, contributing valuable information to the ecology of a deep sea bycatch species.