cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5721340
title: Additional file 5: of Inferring defense-related gene families in Arabidopsis and wheat

description: The distributions of 11 protein-coding gene families over 21 defense-related traits in Arabidopsis. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.5721340.v1
title: Additional file 5: of Inferring defense-related gene families in Arabidopsis and wheat

description: The distributions of 11 protein-coding gene families over 21 defense-related traits in Arabidopsis. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.5721325
title: Additional file 4: of Inferring defense-related gene families in Arabidopsis and wheat

description: The rust resistance QTLs from the T3 database of the wheat seedlings and adult plants and the flanking sequences of their SNP markers from CerealsDB and T3 database. (XLSX 888Â kb)
DOI: 10.6084/m9.figshare.5721325.v1
title: Additional file 4: of Inferring defense-related gene families in Arabidopsis and wheat

description: The rust resistance QTLs from the T3 database of the wheat seedlings and adult plants and the flanking sequences of their SNP markers from CerealsDB and T3 database. (XLSX 888Â kb)
DOI: 10.6084/m9.figshare.5721316
title: Additional file 7: Table S5. of The coding and noncoding transcriptome of Neurospora crassa

description: Splicing analysis: detected annotated and novel splice sites, novel alternative splice sites, splice sites detected in lincRNAs and antisense transcripts (XLSX 974Â kb)
DOI: 10.6084/m9.figshare.5721316.v1
title: Additional file 7: Table S5. of The coding and noncoding transcriptome of Neurospora crassa

description: Splicing analysis: detected annotated and novel splice sites, novel alternative splice sites, splice sites detected in lincRNAs and antisense transcripts (XLSX 974Â kb)
DOI: 10.6084/m9.figshare.5721310
title: Additional file 3: of Inferring defense-related gene families in Arabidopsis and wheat

description: Predicted candidate genes from a large-scale genome-wide scan of associations between SNPs and 21 defense-related traits in Arabidopsis. (XLSX 733Â kb)
DOI: 10.6084/m9.figshare.5721310.v1
title: Additional file 3: of Inferring defense-related gene families in Arabidopsis and wheat

description: Predicted candidate genes from a large-scale genome-wide scan of associations between SNPs and 21 defense-related traits in Arabidopsis. (XLSX 733Â kb)
DOI: 10.6084/m9.figshare.5721289
title: Additional file 2: of Inferring defense-related gene families in Arabidopsis and wheat

description: R code for large-scale genome scan of associations between SNPs and defense-related phenotypes in Arabidopsis. (TXT 8Â kb)
DOI: 10.6084/m9.figshare.5721289.v1
title: Additional file 2: of Inferring defense-related gene families in Arabidopsis and wheat

description: R code for large-scale genome scan of associations between SNPs and defense-related phenotypes in Arabidopsis. (TXT 8Â kb)
DOI: 10.6084/m9.figshare.5721286
title: Additional file 5: Table S3. of The coding and noncoding transcriptome of Neurospora crassa

description: List of identified Neurospora antisense transcripts (XLSX 300Â kb)
DOI: 10.6084/m9.figshare.5721286.v1
title: Additional file 5: Table S3. of The coding and noncoding transcriptome of Neurospora crassa

description: List of identified Neurospora antisense transcripts (XLSX 300Â kb)
DOI: 10.6084/m9.figshare.5721274
title: Additional file 1: of Inferring defense-related gene families in Arabidopsis and wheat

description: The designated rust genes and their chromosomal locations as well as primer sequences of associated molecular markers. (XLSX 94Â kb)
DOI: 10.6084/m9.figshare.5721274.v1
title: Additional file 1: of Inferring defense-related gene families in Arabidopsis and wheat

description: The designated rust genes and their chromosomal locations as well as primer sequences of associated molecular markers. (XLSX 94Â kb)
DOI: 10.6084/m9.figshare.5721265
title: Additional file 4: Table S2. of The coding and noncoding transcriptome of Neurospora crassa

description: List of possibly coding genes with significant CPC scores (XLSX 28Â kb)
DOI: 10.6084/m9.figshare.5721265.v1
title: Additional file 4: Table S2. of The coding and noncoding transcriptome of Neurospora crassa

description: List of possibly coding genes with significant CPC scores (XLSX 28Â kb)
DOI: 10.6084/m9.figshare.5721259
title: Additional file 1: Table S1. of Predictive model identifies strategies to enhance TSP1-mediated apoptosis signaling

description: Biochemical reactions and parameter values. Table S2. Initial protein concentrations. Table S3. Estimated parameter values and model fitness. Table S4. Results from ANOVA analysis for T t and max cPARP. Table S5. Results from non-parametric t test for XIAP and PARP. Table S6. Results from ROC analysis. (XLSX 32Â kb)
DOI: 10.6084/m9.figshare.5721259.v1
title: Additional file 1: Table S1. of Predictive model identifies strategies to enhance TSP1-mediated apoptosis signaling

description: Biochemical reactions and parameter values. Table S2. Initial protein concentrations. Table S3. Estimated parameter values and model fitness. Table S4. Results from ANOVA analysis for T t and max cPARP. Table S5. Results from non-parametric t test for XIAP and PARP. Table S6. Results from ROC analysis. (XLSX 32Â kb)
DOI: 10.6084/m9.figshare.5721238
title: Additional file 3: Table S1. of The coding and noncoding transcriptome of Neurospora crassa

description: List of identified Neurospora lincRNAs (XLSX 573Â kb)
DOI: 10.6084/m9.figshare.5721238.v1
title: Additional file 3: Table S1. of The coding and noncoding transcriptome of Neurospora crassa

description: List of identified Neurospora lincRNAs (XLSX 573Â kb)
DOI: 10.6084/m9.figshare.5721124
title: Evaluating indicators of human well-being for ecosystem-based management

description: <b>Introduction:</b> Interrelated social and ecological challenges demand an understanding of how environmental change and management decisions affect human well-being. This paper outlines a framework for measuring human well-being for ecosystem-based management (EBM). We present a prototype that can be adapted and developed for various scales and contexts. Scientists and managers use indicators to assess status and trends in integrated ecosystem assessments (IEAs). To improve the social science rigor and success of EBM, we developed a systematic and transparent approach for evaluating indicators of human well-being for an IEA. <b>Methods:</b> Our process is based on a comprehensive conceptualization of human well-being, a scalable analysis of management priorities, and a set of indicator screening criteria tailored to the needs of EBM. We tested our approach by evaluating more than 2000 existing social indicators related to ocean and coastal management of the US West Coast. We focused on two foundational attributes of human well-being: resource access and self-determination. <b>Outcomes and Discussion:</b> Our results suggest that existing indicators and data are limited in their ability to reflect linkages between environmental change and human well-being, and extremely limited in their ability to assess social equity and justice. We reveal a critical need for new social indicators tailored to answer environmental questions and new data that are disaggregated by social variables to measure equity. In both, we stress the importance of collaborating with the people whose well-being is to be assessed. <b>Conclusion:</b> Our framework is designed to encourage governments and communities to carefully assess the complex tradeoffs inherent in environmental decision-making.
DOI: 10.6084/m9.figshare.5721124.v1
title: Evaluating indicators of human well-being for ecosystem-based management

description: <b>Introduction:</b> Interrelated social and ecological challenges demand an understanding of how environmental change and management decisions affect human well-being. This paper outlines a framework for measuring human well-being for ecosystem-based management (EBM). We present a prototype that can be adapted and developed for various scales and contexts. Scientists and managers use indicators to assess status and trends in integrated ecosystem assessments (IEAs). To improve the social science rigor and success of EBM, we developed a systematic and transparent approach for evaluating indicators of human well-being for an IEA. <b>Methods:</b> Our process is based on a comprehensive conceptualization of human well-being, a scalable analysis of management priorities, and a set of indicator screening criteria tailored to the needs of EBM. We tested our approach by evaluating more than 2000 existing social indicators related to ocean and coastal management of the US West Coast. We focused on two foundational attributes of human well-being: resource access and self-determination. <b>Outcomes and Discussion:</b> Our results suggest that existing indicators and data are limited in their ability to reflect linkages between environmental change and human well-being, and extremely limited in their ability to assess social equity and justice. We reveal a critical need for new social indicators tailored to answer environmental questions and new data that are disaggregated by social variables to measure equity. In both, we stress the importance of collaborating with the people whose well-being is to be assessed. <b>Conclusion:</b> Our framework is designed to encourage governments and communities to carefully assess the complex tradeoffs inherent in environmental decision-making.
DOI: 10.6084/m9.figshare.5721109
title: Dataset for: Assessing the predictive accuracy of earthquake strike angle estimates using non-parametric Hawkes processes.

description: Earthquake focal mechanism estimates have been posited to have predictive value for forecasting future seismicity. In particular, for strike-slip earthquakes, aftershocks should occur roughly along the estimated mainshock strike. However, the errors in such estimated strike angles is considerable. We compare the degree to which estimated strike angles forecast the direction of future seismicity around a given earthquake to that of uniformly distributed angles and to strike angles estimated based on previous seismicity. The fit of non-parametrically estimated Hawkes models using the estimated strike angle that best fits the post-mainshock set of events for each mainshock is compared to that of corresponding models that exclude these estimates. Strike angle estimates are shown to have marginal predictive value for forecasting the direction of future seismicity, but no more than the better-fitting of a uniformly distributed angle and its complement.
DOI: 10.6084/m9.figshare.5721109.v1
title: Dataset for: Assessing the predictive accuracy of earthquake strike angle estimates using non-parametric Hawkes processes.

description: Earthquake focal mechanism estimates have been posited to have predictive value for forecasting future seismicity. In particular, for strike-slip earthquakes, aftershocks should occur roughly along the estimated mainshock strike. However, the errors in such estimated strike angles is considerable. We compare the degree to which estimated strike angles forecast the direction of future seismicity around a given earthquake to that of uniformly distributed angles and to strike angles estimated based on previous seismicity. The fit of non-parametrically estimated Hawkes models using the estimated strike angle that best fits the post-mainshock set of events for each mainshock is compared to that of corresponding models that exclude these estimates. Strike angle estimates are shown to have marginal predictive value for forecasting the direction of future seismicity, but no more than the better-fitting of a uniformly distributed angle and its complement.
DOI: 10.6084/m9.figshare.5721079
title: Understorey biomass and cover data for the EucFACE experiment between 20140801 - 20170331

description: The four files (.csv) contain data on understorey cover and biomass estimated at EucFACE between the 1st of August 2014 and the 31st of March 2017. Data was collected using time lapse photography (% cover) and stereo imagery (biomass). Data collection is ongoing. The data contained in the zip file was used in the associated manuscript. Further data information can be found in the embedded readme file.
DOI: 10.6084/m9.figshare.5721076
title: Figures for "Quantifying Support for the Null Hypothesis in Psychology: An Empirical Investigation"

description: Figures for "Quantifying Support for the Null Hypothesis in Psychology: An Empirical Investigation"
DOI: 10.6084/m9.figshare.5721076.v2
title: Figures for "Quantifying Support for the Null Hypothesis in Psychology: An Empirical Investigation"

description: Figures for "Quantifying Support for the Null Hypothesis in Psychology: An Empirical Investigation"
DOI: 10.6084/m9.figshare.5721070
title: Silence of specific groups of children in researches

description: ABSTRACT Gradually, we have seen the expansion of space granted to the voice of children in researches on social and human sciences, although historically they have disregarded children’s voice, because they were seen as incompetent to judge or properly inform. The article discusses how their perspective has been incorporated in Brazilian research, with special emphasis on the characterization of the children involved. We have analyzed 179 research report articles of anthropology, education, psychology and sociology with the involvement of children that were published between 2000 and 2012 in journals classified as A1 or A2 by the Coordination for the Improvement of Higher Education Personnel (CAPES). Young children, living in non-urban areas or located in the North, Northeast and Midwest remain silenced. There is this absence with important theoretical and political repercussion.
DOI: 10.6084/m9.figshare.5721070.v1
title: Silence of specific groups of children in researches

description: ABSTRACT Gradually, we have seen the expansion of space granted to the voice of children in researches on social and human sciences, although historically they have disregarded children’s voice, because they were seen as incompetent to judge or properly inform. The article discusses how their perspective has been incorporated in Brazilian research, with special emphasis on the characterization of the children involved. We have analyzed 179 research report articles of anthropology, education, psychology and sociology with the involvement of children that were published between 2000 and 2012 in journals classified as A1 or A2 by the Coordination for the Improvement of Higher Education Personnel (CAPES). Young children, living in non-urban areas or located in the North, Northeast and Midwest remain silenced. There is this absence with important theoretical and political repercussion.
DOI: 10.6084/m9.figshare.5721058
title: Ovarian Morphology and Egg Quality Traits of Egyptian Selected Strain for Egg Production Compared with Commercial Laying Strains

description: ABSTRACT An experiment was conducted to evaluate the effect of selection for egg production performance of Cairo L-2 strain, as a local layer strain, after five generations of selection on productivity, ovarian morphology and some egg quality traits versus commercial Lohmann Brown-Lite (LBL) strain. The performance in the 5th generation was evaluated in Cairo L-2 and LBL strains for live body weight at sexual maturity (BWSM), age at sexual maturity (ASM), first egg weight (FEW), ovarian morphology, ovarian follicles number, ovarian weights and diameter, oviduct weight, liver weight, and stroma weight and their percentages to live body weight at sexual maturity for Cairo L-2 and LBL strains. Egg traits at 36 weeks of age including: egg number (EN), egg weight (EW), shell thickness (ST), and shell index (SI) were also obtained. Current results indicated that Cairo L-2 strain had higher ASM compared with LBL strain. Also, Cairo L-2 strain had lower BWSM, oviduct, ovary, stroma, and liver absolute weights and relative ovary weight compared with LBL strain. Ovarian follicles number, weights and diameter, FEW, and EN until 36 weeks of age were higher in LBL than in Cairo L-2 strain. Also, SI of the LBL was higher than that of Cairo L-2 strain. Moreover, Cairo L-2 strain egg production until 36 weeks of age was about 80% of that of LBL strain with good ST and SI. In conclusion, there were positive responses in ovarian morphology, egg production, and egg quality traits of Cairo L-2 strain associated with breeding program.
DOI: 10.6084/m9.figshare.5721055
title: Looking back ahead: a short history of collaborative work with indigenous source communities at the Weltmuseum Wien

description: Abstract In the last few years, collaborating with representatives of indigenous communities became an important topic for European ethnographic museums. The Weltmuseum Wien (former Museum of Ethnology Vienna, Austria) adheres to this form of sharing cultural heritage. Its Brazilian collection offers rich opportunities to back up Amazonian cultures in their struggle for cultural survival. However, to establish collaborative work in a European museum on a sustained basis is still a difficult endeavor. The article will discuss the projects which have been realized during the past five years with several groups from Amazonia, such as the Warí, Kanoé, Makushí, Shipibo and Sateré-Mawé. Projects were carried out in Austria, Brazil, and Guyana and ranged from short visit to longer periods of co-curating an exhibition. As for the Museum, results are documented in the collection, in two exhibitions and in the accompanying catalogues. It is less clear what the indigenous communities might take away from such collaborations. It will be argued that museum collaborations can help establish a new contact zone, ‘indoors’ and ‘outdoors’, in which members of heritage communities are able to break through the silence in the old contact zone and finally make their own voices heard.
DOI: 10.6084/m9.figshare.5721055.v1
title: Looking back ahead: a short history of collaborative work with indigenous source communities at the Weltmuseum Wien

description: Abstract In the last few years, collaborating with representatives of indigenous communities became an important topic for European ethnographic museums. The Weltmuseum Wien (former Museum of Ethnology Vienna, Austria) adheres to this form of sharing cultural heritage. Its Brazilian collection offers rich opportunities to back up Amazonian cultures in their struggle for cultural survival. However, to establish collaborative work in a European museum on a sustained basis is still a difficult endeavor. The article will discuss the projects which have been realized during the past five years with several groups from Amazonia, such as the Warí, Kanoé, Makushí, Shipibo and Sateré-Mawé. Projects were carried out in Austria, Brazil, and Guyana and ranged from short visit to longer periods of co-curating an exhibition. As for the Museum, results are documented in the collection, in two exhibitions and in the accompanying catalogues. It is less clear what the indigenous communities might take away from such collaborations. It will be argued that museum collaborations can help establish a new contact zone, ‘indoors’ and ‘outdoors’, in which members of heritage communities are able to break through the silence in the old contact zone and finally make their own voices heard.
DOI: 10.6084/m9.figshare.5721052
title: “Holographic” pyramid: conceptual errors and didactic potential

description: Allusion to holograms is identified in different contexts to refer to different devices and shows, like the images displayed by the pyramids “holographic”. However, as we pointed out in this article, the images displayed by these pyramids, besides not being holograms in fact, are just two-dimensional images. We identified, however, a rich didactic potential in “holographic” pyramids for the teaching of Physics, especially when we consider the transition from the student's naive curiosity to epistemological curiosity and the teaching of certain concepts of optics and mathematics. Therefore, we built a quadrangular pyramid using acrylic plates and we made discussions about their operation. Through this article, we hope, among other things, to promote the critical awareness of teachers and students in the face of technological artifacts in constant changes around them, especially those considered as holograms.
DOI: 10.6084/m9.figshare.5721049
title: Numerical Evaluation of the Influence of Urbanization in the Convection and Precipitation Patterns in the Metropolitan Region of São Paulo

description: Abstract Studies indicate that urban areas can become Urban Heat Islands (UHI) mainly due to the lack of green areas, high emissions of air pollutants and presence of civil materials, which absorb and retain more heat for a longer time than natural, which makes the temperatures of these sites higher than the surrounding areas. The influence of convective processes in rain formation in order to modify the rainfall region are discussed in the scientific world, since that processes also depend on the local temperature. In this context, the influence of urbanization on rainfall in the metropolitan region of São Paulo (MRSP) was assessed by means of statistical methods and numerical simulations. The WRF model was used with different soil type and usage settings, namely: 1 - current urban sprawl; 2 - expanded urban area; 3 - urban sprawl replaced by native forest. The numerical simulations were performed for events in which convection played a key role in setting rainfall. The analysis of time series of precipitation has shown indications of change of pattern behavior in the MRSP mainly in the 1980s and 1990s and 2000 to the present, although it has not shown tendency to increase or decrease the average rainfall in the MRSP. The simulation results highlighted the strong influence of urbanization on atmospheric dynamics and consequently the UHI of the MRSP, culminating in severe and concentrated convective precipitation event around and inside the urban area. Simulations in which urbanization was changed to native forest, precipitation occurred, in most cases, in a more spatially distributed way and with less intensity cores.
DOI: 10.6084/m9.figshare.5721046
title: Phrenic nerve conduction studies: normative data and technical aspects

description: ABSTRACT Objective: The aim of the present study was to define normative data of phrenic nerve conduction parameters of a healthy population. Methods: Phrenic nerve conduction studies were performed in 27 healthy volunteers. Results: The normative limits for expiratory phrenic nerve compound muscle action potential were: amplitude (0.47 mv - 0.83 mv), latency (5.74 ms - 7.10 ms), area (6.20 ms/mv - 7.20 ms/mv) and duration (18.30 ms - 20.96 ms). Inspiratory normative limits were: amplitude (0.67 mv - 1.11 mv), latency (5.90 ms - 6.34 ms), area (5.62 ms/mv - 6.72 ms/mv) and duration (13.77 ms - 15.37 ms). Conclusion: The best point of phrenic nerve stimulus in the neck varies among individuals between the medial and lateral border of the clavicular head of the sternocleidomastoid muscle and stimulation of both sites, then choosing the best phrenic nerve response, seems to be the appropriate procedure.