cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/67d697k38y.1
title: Aerden et al. 2022 (Tectonics) - Supplemental Data set 1

description: SAMPLE LIST 
List of samples and brief petrographic descriptions of Tectonics article "Refined tectonic evolution of the Betic-Rif orogen through integrated 3-D microstructural analysis and Sm-Nd dating of garnet porphyroblasts"
Authors: Domingo G.A.M. Aerden, Thomas P. Farrell, Ethan F. Baxter, Emily M. Stewart, Alejandro Ruiz-Fuentes, Mohamed Bouybaouene


File name: "ES1 SAMPLE LIST.xlsx"
Type of file: Microsoft Excel
Contents: List of samples with brief petrographic descriptions
DOI: 10.25919/mdcx-js48
title: Parkes observations for project P737 semester 2022APRS_11

description: The aim of this proposal is to carry out tests of the new backend instruments which cannot be carried out during standard maintenance periods. The scheduled time is used to measure beam shapes, determine polarisation calibration solutions and commission the National Facility observing modes for the new wide-band receiver.
DOI: 10.17632/3kjkm2mfxz.1
title: LINF_320034400

description: As/Sb Reductase (ACR2)
Leishmania infantum (strain JPCM5)
DOI: 10.17632/t96nbjb4tm.1
title: LINF_320033800

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/5vg38x3d33.1
title: LINF_320033700

description: mt-SAF5
Leishmania infantum (strain JPCM5)
DOI: 10.17632/y5wh4vy7p7.1
title: Simultaneous improvement of lodging resistance and grain yield in rice paddies: a meta-analysis (R1)9.22

description: Five datasets: (1) hybrid rice, (2) inorganic N fertilization, (3) Si fertilization, (4) K fertilization, and (5) PGRs application.
DOI: 10.17632/wrb45vfgf3.1
title: Downscaled GRACE-FO TWSA for Greece

description: The dataset comprises GRACE-FO downscaled Total Water Storage Anomalies, at 0.1 degrees spatial resolution. Units are in mm with reference the 2004 - 2009 period. 
Abstract: A downscaling framework for coarse resolution Gravity Recovery and Climate Experiment (GRACE) Total Water Storage Anomaly (TWSA) data is described, exploiting the observations of precipitation from the Global Precipitation Measurement (GPM) mission, using the Integrated Multisatellite Retrievals for GPM (IMERG). Considering that the major driving force for changes in TWS is precipitation, we tested our hypothesis that coarse resolution, i.e., 1◦, GRACE TWSA can be effectively downscaled to 0.1◦ using GPM IMERG data. The algorithm for the downscaling process comprises the development of a regression equation at the coarse resolution between the GRACE and GPM IMERG data, which is then applied at the finer resolution with a subsequent residual correction procedure. An ensemble of GRACE data from three processing centers, i.e., GFZ, JPL and CSR, was used for the time period from June 2018 until March 2021. To verify our downscaling methodology, we applied it with GRACE data from 2005 to 2015, and we compared it against modeled TWSA from two independent datasets in the Thrace and Thessaly regions in Greece for the same period and found a high performance in all examined metrics. Our research indicates that the downscaled GRACE observations are comparable to the TWSA estimated with hydrological modeling, thus highlighting the potential of GRACE data to contribute to the improvement of hydrological model performance, especially in ungauged basins.
DOI: 10.17632/26p2hcf2vg.1
title: Characterization and Antimicrobial Efficacy of Silver Nanoparticles Synthesized from parts of Endemic Species Terminalia pallida Brandis

description: The present data submitted here is related to my research work. In this paper, I've mentioned the work related to the synthesis of silver nanoparticles, their characterization, and their three applications. 
UV- VIS:- (UV-VIS-NIR spectrophotometer, Jasco Make, Japan Model: V-670) - at VIT, Vellore; FTIR Modal: IR Affinity-1, (Shimadzu, Mode of Analysis: ATR Mode, Japan) at VIT, Vellore; XRD:- Bruker D-8 advance, Germany at VIT, Vellore; AFM:- (Bruker USA), ICON (Dimension) Scan Asyst at IISc Bangalore; HRSEM:- Hitachi S-3400 N SEM at IISc Bangalore; FeSEM:- (SUPRA 55) Carl Zeiss, Germany at Sathyabama University, Chennai; HRTEM:- FEI-TECNAI G2-20 TWIN (200kV) at VIT, Vellore.

Applications
I. Against Gram-Negative strains (-Ve): Escherichia coli and Staphylococcus aureus; Gram-Positive Strains (+Ve): Klebsiella pneumoniae and Bacillus subtilis. 

Description About this Research work
Terminalia pallida is a semi-evergreen endemic tree. The leaf, bark, and fruits are known for their medicinal and therapeutic values. These parts have extraordinary medicinal characteristics in curing various diseases and most of the tribal people are still using the extracts of these plant parts in their daily life and curing various ailments. 
A lot of work had been carried out on the biosynthesis of metal and mineral nanoparticles using numerous plants. Green synthesis of nanoparticles using traditional endemic medicinal plants is scanty. So far no work has been carried out on the production of silver nanoparticles by using leaf, bark, and fruits of T. pallida. In this connection, the research work aimed to synthesize nanoparticles from plant parts individually. 
These biosynthesized silver nanoparticles are exhibiting antimicrobial activity which showed the efficacy of check microbial growth, along with anti-scavenging and anti-inflammatory activities. Depending on the size of SNPs they were used for different applications such as antioxidant, anti-inflammatory, and antimicrobial activity and the results showed that the SNPs have efficacy in controlling different diseases and disorders successfully when compared to the other raw forms at the nano-level, thus proving their efficiency in controlling microbes and other activities. 
The plant parts of Terminaliapallida can be further explored for their various uses concerning SNPs and their applications in neutraceuticals and pharmaceutical industries in the future.
DOI: 10.17632/4fh598c8w2.1
title: Gross Tumour Volume CT Radiomics for Prognostication of Recurrence & Death following Curative-Intent Radiotherapy for Non-Small Cell Lung Cancer

description: Recurrence occurs in up to 36% of patients treated with curative-intent radiotherapy for NSCLC. Identifying patients at higher risk of recurrence for more intensive surveillance may facilitate earlier introduction of the next line of treatment. We aimed to use radiotherapy planning CT scans to develop radiomic classification models that predict overall survival (OS), recurrence-free survival (RFS) and recurrence two years post-treatment for risk-stratification. A retrospective multi-centre study of >900 patients receiving curative-intent radiotherapy for stage I-III NSCLC was undertaken. Models using radiomic and/or clinical features were developed, compared with ten-fold cross-validation and an external test set, and benchmarked against TNM-stage. Such models could be integrated into the routine radiotherapy workflow, thus informing a personalised surveillance strategy at the point of treatment. Our work lays the foundations for future prospective clinical trials for quantitative personalised risk-stratification for surveillance following curative-intent radiotherapy for NSCLC.
The radiomic feature data are provided here. Due to confidentiality, clinical data collected for the study are not publicly available for download, however the corresponding authors can be contacted for academic inquiries.
DOI: 10.17632/8kgftsbf5k.1
title: Raw data from transcriptome sequencing of 12 colorectal cancer patients in Ruijin hospital (performed by Dr. Jing Sun))

description: The study was approved by the Ethical Committee of Ruijin Hospital with a clinical trial registration number NCT04714814. Among the prospective patient cohort collected, 12 CRC individuals for the High-throughput transcriptome analysis were strictly screened in our center, without any medical treatment before recruitment. Total RNA was isolated from the surgically discarded normal and tumor colorectal tissues of these 12 CRC individuals. Then, the cDNA library was constructed, and high-throughput sequencing was performed at Shanghai Jiao Tong University School of Medicine (Shanghai, China) using the HiSeq 4000 (Illumina, San Diego, CA). Raw data of the gene expression and clinical information about them is listed below.
DOI: 10.17632/5wxtn7p83h.1
title: Bacterial degradation of bisphenol A and its analogues: An overview

description: This is the dataset of the manuscript "Bacterial degradation of bisphenol A and its analogues: An overview." submited to Environmental science and pollution research by J. de Morais Farias and N. Krepsky, from Federal University of the State of Rio de Janeiro, for appreciation. 

A total of 84 original papers on bacterial degradation of twelve different published from 1964 to 2020 were selected for this review after PubMed and Google Scholar survey. 

Contact the authors by Emailing to natascha@unirio.br (N. Krepsky).
DOI: 10.17632/xhtg2bjgm4.1
title: Oral Acute Toxicity OECD 423_Ocimum sanctum ethanolic extract

description: The raw data of acute oral toxicity of Ocimum sanctum Linn. ethanolic extract
DOI: 10.17632/8bgf5vk3yd.1
title: Wall and roof solutions for a retail building considering cost investment and life cycle approach: a case study in Portugal

description: This data set provides the energy certificate of the case study
DOI: 10.17632/bckzcdcf92.1
title: Real-world evidence for the efficacy and safety of risankizumab in moderate-to-severe psoriasis: a systematic review and meta-analysis

description: These data is a supplementary data for a manuscript entitled " Real-world evidence for the efficacy and safety of risankizumab in moderate-to-severe psoriasis: a systematic review and meta-analysis ". In this study, we showed that risankizumab seemed to be an advantageous treatment option for moderate-to-severe psoriasis with its satisfactory performance in efficacy, safety and drug discontinuation in long term based on real-world evidence. Owing to the current limited number and quality of studies, more long-term and high-quality real-world studies are required for a more comprehensive assessment of risankizumab.
DOI: 10.17632/kpfjp24rfc.1
title: Effectiveness of breath testing correction

description: Introduction
Breath testing of hydrogen (H2) and methane (CH4) is widely used for assessment of carbohydrate malabsorption and small intestinal bacterial overgrowth. Simultaneous breath sampling of oxygen (O2) concentration allows assessment of breath sample quality and potentially adjustment of H2 and CH4 concentration based on this. The following formula has been used for correction commercially and clinically:

H2normalised = H2measured  x  (O2atmospheric – O2reference)/ (O2atmospheric – O2measured)

Method
4 volunteers provided sets of 3 breath samples taken very close together: ideal, sub-optimal and deliberately bad. In total 63 pairs of samples presumed to represent the same underlying alveolar breath H2 concentration were collected. The H2 concentration in the worse sample was normalised to the O2 concentration in the better sample using the formula above and compared with the true H2 concentration actually measured in the better sample.
 
Results
There was very good correlation between normalised H2 concentration from the worse breath sample and H2 concentration in the better sample for the full range of O2 concentrations measured from 11.4% to 16.0% O2 (R=0.909, P<0.001). The normalised H2 concentration systematically underestimated true H2 concentration by on average 5.6% (paired t-test, t= 5.36, P<0.001).

Discussion
There is no threshold O2 concentration below which changes in O2 concentration have no effect on measured H2. The normalisation correction algorithm used is effective. For breath testing to be better accepted, widespread agreement on the correction algorithm for O2 concentration and of the reference O2 concentration to correct measured H2 and CH4 concentration is required.
DOI: 10.17632/zhhk28fdkf.1
title: LINF_320034900

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/3f7k3yxcj8.1
title: Dataset on green synthesised silver-cobalt nanoparticles using Annona muricata leaf 

description: The data obtained during the UV-Visible spectroscopic analysis of the sample. Also, data from the FTIR analysis to determine the functional groups present in the phytochemicals that reduced silver and cobalt metal ions.
DOI: 10.17632/7gnc86dwhk.1
title: Copper-iron Isotopic Fractionation During Formation of Magmatic Sulfide Deposit: Insight from Giant Kalatongke deposit in the Central Asian Orogenic Belt

description: Table  S1-S4 for Dongmei Tang
DOI: 10.17632/fmgvbpwdk7.1
title: Epitomic Data for a Multiannual Record of Convective Instability in Mars's Middle Atmosphere from the Mars Climate Sounder

description: Heavens, Nicholas (2022), “Epitomic Data for a Multiannual Record of Convective Instability in Mars's Middle Atmosphere from the Mars Climate Sounder”, Mendeley Data, V1, doi: 10.17632/fmgvbpwdk7.1

Title: Epitomic Data for a Multiannual Record of Convective Instability in Mars's Middle Atmosphere from the Mars Climate Sounder

Author: Nicholas G. Heavens, Space Science Institute, Boulder, CO, USA and London, UK (nheavens@spacescience.org)

Date: 22 September 2022 

Overview: This dataset contains significant data analysis products underlying an upcoming manuscript submission to the Planetary Science Journal. The dataset will be updated as the review process proceeds.

The data products fall into three broad categories: (1) estimates of the mean probability of convective instability derived from diagnosis of convective instability in retrieved temperature profiles from Mars Climate Sounder on board Mars Reconnaissance Orbiter (MRO-MCS) and a variety of averaging techniques; (2) an overview of temporal data coverage of the MRO-MCS convective instability survey used to make the products in (1); and (3) mean temperature fields derived from MRO-MCS retrieved temperature profiles for comparison with the results of:

Steele, L. J., Kleinböhl, A., & Kass, D. M. (2021). Observations of ubiquitous nighttime temperature inversions in Mars' tropics after large-scale dust storms. Geophysical Research Letters, 48, e2021GL092651. https://doi.org/10.1029/2021GL092651 

If you are using this dataset and are feeling confused or wish there were some additional information from the article in this dataset, please contact me. A complete account of the contents and a restatement of this description is included as MCS_CONVINST_SURVEY_DESC.PDF

Acknowledgments: The archiving of this dataset is supported by NASA’s Mars Data Analysis Program (80NSSC19K1215).
DOI: 10.17632/jh9prbkhg6.1
title: LINF_320035200

description: RNA-binding protein | NOP4
Leishmania infantum (strain JPCM5)
DOI: 10.22003/xfel.eu-data-003079-00
title: Structural and Electronic Dynamics in Coenzyme B12 and its Analogs
DOI: 10.6084/m9.figshare.19815564
title: Adaptive responses to flooding in wild rice species with various genomes other than AA

description: In the present study, 15 accessions of wild rice species belonging to genome groups different from that of <i>Oryza sativa</i> were tested for their adaptive response to flooding at the seedling and mature stages. Under complete submergence at the seedling stage, reduced underwater shoot elongation and high survival rate after the recovery period were observed in the accessions of <i>O. minuta</i> as well as tetraploid <i>O. punctata, O. eichingeri, O. officinalis, O. alta, O. grandiglumis, O. latifolia</i>, and <i>O. australiensis</i>. This suggests that these species exhibit submergence tolerance at the seedling stage. During gradual submergence at mature stage, promoted internodal elongation was observed in the accessions of diploid and tetraploid <i>O. punctata, O. alta, O. grandiglumis, O. latifolia</i>, and <i>O. brachyantha</i>. This suggests that these species possess floating ability. Remarkably, two CCDD genome species, namely <i>O. grandiglumis</i> and <i>O. latifolia</i>, strongly displayed both submergence tolerance at the seedling stage and floating ability at mature stage, suggesting that these species are valuable genetic resources for improving rice adaptability to flooding. <i>SUB1A</i> and <i>SNORKEL</i> genes are known to confer submergence tolerance and floating ability to <i>O. sativa</i>, respectively. However, <i>SUB1A, SNORKEL1</i>, and <i>SNORKEL2</i> genes were not detected in any of the wild rice accessions investigated in the present study. Our results suggest that adaptive responses to flooding in the investigated wild rice species can be achieved independently of the presence or absence of <i>SUB1A</i> and <i>SNORKEL</i> genes.
DOI: 10.6084/m9.figshare.19815564.v1
title: Adaptive responses to flooding in wild rice species with various genomes other than AA

description: In the present study, 15 accessions of wild rice species belonging to genome groups different from that of <i>Oryza sativa</i> were tested for their adaptive response to flooding at the seedling and mature stages. Under complete submergence at the seedling stage, reduced underwater shoot elongation and high survival rate after the recovery period were observed in the accessions of <i>O. minuta</i> as well as tetraploid <i>O. punctata, O. eichingeri, O. officinalis, O. alta, O. grandiglumis, O. latifolia</i>, and <i>O. australiensis</i>. This suggests that these species exhibit submergence tolerance at the seedling stage. During gradual submergence at mature stage, promoted internodal elongation was observed in the accessions of diploid and tetraploid <i>O. punctata, O. alta, O. grandiglumis, O. latifolia</i>, and <i>O. brachyantha</i>. This suggests that these species possess floating ability. Remarkably, two CCDD genome species, namely <i>O. grandiglumis</i> and <i>O. latifolia</i>, strongly displayed both submergence tolerance at the seedling stage and floating ability at mature stage, suggesting that these species are valuable genetic resources for improving rice adaptability to flooding. <i>SUB1A</i> and <i>SNORKEL</i> genes are known to confer submergence tolerance and floating ability to <i>O. sativa</i>, respectively. However, <i>SUB1A, SNORKEL1</i>, and <i>SNORKEL2</i> genes were not detected in any of the wild rice accessions investigated in the present study. Our results suggest that adaptive responses to flooding in the investigated wild rice species can be achieved independently of the presence or absence of <i>SUB1A</i> and <i>SNORKEL</i> genes.
DOI: 10.6084/m9.figshare.20376273.v1
title: Predicting rice (<i>Oryza sativa</i> L.) canopy temperature difference and estimating its environmental response in two rice cultivars, ‘Koshihikari’ and ‘Takanari’, based on a neural network

description: Canopy photosynthesis is an important component of biomass production in field-grown rice (<i>Oryza sativa</i> L.). Although canopy temperature differences (CTD) provide important information for evaluating canopy photosynthesis, the measurement of CTD is still a labor-intensive task. Therefore, we designed this study to establish a model for predicting CTD under different field conditions using meteorological data and evaluated the environmental response of CTD using the established model. Our study collected 2,056,264 CTD data points from two rice cultivars having different photosynthetic capacities, ‘Koshihikari’ and ‘Takanari’, and then used these data to create a novel model using a neural network (NN). The input variables were limited to meteorological data, and the output variable was set to CTD. The established NN model produced a prediction accuracy of R<sup>2</sup> = 0.792 and RMSE = 0.605°C. We then used this NN model to simulate the CTD response of the Koshihikari and Takanari cultivars in response to various environmental changes. These predictions revealed that Takanari had a lower CTD than Koshihikari when exposed to high relative humidity (RH) or low to moderate solar radiation (<i>R<sub>s</sub></i>). In contrast, the CTD of Koshihikari tended to be lower than that of Takanari under lower RH or higher <i>R<sub>s</sub></i>. This result implies that the advantages of the single-leaf gas exchange system in Takanari can be mitigated under extremely high-VPD conditions. Thus, our new method may provide a powerful tool to gain a better understanding of gas exchange, growth processes, and varietal differences in rice cultivated under field conditions.
DOI: 10.6084/m9.figshare.20376273
title: Predicting rice (<i>Oryza sativa</i> L.) canopy temperature difference and estimating its environmental response in two rice cultivars, ‘Koshihikari’ and ‘Takanari’, based on a neural network

description: Canopy photosynthesis is an important component of biomass production in field-grown rice (<i>Oryza sativa</i> L.). Although canopy temperature differences (CTD) provide important information for evaluating canopy photosynthesis, the measurement of CTD is still a labor-intensive task. Therefore, we designed this study to establish a model for predicting CTD under different field conditions using meteorological data and evaluated the environmental response of CTD using the established model. Our study collected 2,056,264 CTD data points from two rice cultivars having different photosynthetic capacities, ‘Koshihikari’ and ‘Takanari’, and then used these data to create a novel model using a neural network (NN). The input variables were limited to meteorological data, and the output variable was set to CTD. The established NN model produced a prediction accuracy of R<sup>2</sup> = 0.792 and RMSE = 0.605°C. We then used this NN model to simulate the CTD response of the Koshihikari and Takanari cultivars in response to various environmental changes. These predictions revealed that Takanari had a lower CTD than Koshihikari when exposed to high relative humidity (RH) or low to moderate solar radiation (<i>R<sub>s</sub></i>). In contrast, the CTD of Koshihikari tended to be lower than that of Takanari under lower RH or higher <i>R<sub>s</sub></i>. This result implies that the advantages of the single-leaf gas exchange system in Takanari can be mitigated under extremely high-VPD conditions. Thus, our new method may provide a powerful tool to gain a better understanding of gas exchange, growth processes, and varietal differences in rice cultivated under field conditions.
DOI: 10.48600/mol-b8as-vh75
title: Country-level checklists and occurrences for the world’s Odonata (dragonflies and damselflies)

description: Biogeographic inference as well as assessments of species’ threat status and trends depend on comprehensive information on the current geographic distribution of species. At the global scale, such information remains woefully inadequate for insects, despite broad concerns about their decline. Even country-level presences remain poorly known for many species and consistent global overviews for insect taxa are missing. Here we integrate information from literature checklists, point occurrences, and identify potential species range gaps to provide a database of country-level checklists of dragonfly and damselfly species. While limited in spatial detail, country-level characterizations of species distributions are a useful baseline and starting point for global biogeographic assessment and for assessing remaining gaps in taxonomic and spatial knowledge.
DOI: 10.6084/m9.figshare.20457063
title: Vibrio parahaemolyticus culture material and the 16S rRNA gene analysis (sharefig).pdf

description: Bacterial culture condition and identification details for <strong>"Draft Genome Sequence of the </strong><em><strong>Vibrio parahaemolyticus</strong></em><strong> Strains VHT1 and VHT2, pasteurization-resistant Isolates from Environmental Seafood".</strong>