cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20250529.v1
title: Additional file 6 of Hik28-dependent and Hik28-independent ABC transporters were revealed by proteome-wide analysis of ΔHik28 under combined stress

description: Additional file 6.
DOI: 10.6084/m9.figshare.20250532.v1
title: Additional file 7 of Hik28-dependent and Hik28-independent ABC transporters were revealed by proteome-wide analysis of ΔHik28 under combined stress

description: Additional file 7.
DOI: 10.6084/m9.figshare.20250535.v1
title: Additional file 8 of Hik28-dependent and Hik28-independent ABC transporters were revealed by proteome-wide analysis of ΔHik28 under combined stress

description: Additional file 8.
DOI: 10.6084/m9.figshare.20250538
title: Additional file 9 of Hik28-dependent and Hik28-independent ABC transporters were revealed by proteome-wide analysis of ΔHik28 under combined stress

description: Additional file 9.
DOI: 10.6084/m9.figshare.20250538.v1
title: Additional file 9 of Hik28-dependent and Hik28-independent ABC transporters were revealed by proteome-wide analysis of ΔHik28 under combined stress

description: Additional file 9.
DOI: 10.25919/ptz4-3p46
title: Parkes observations for project P1128 semester 2022APRS_04

description: This proposal requests 4 hours to carry out regular monitoring an eclipsing binary millisecond pulsar in the globular cluster NGC 6397, which we discovered with the Parkes UWL.
DOI: 10.6084/m9.figshare.20250264
title: The novel antitumor compound clinopodiside A induces cytotoxic autophagy via the signaling of BLK and RasGRP2 in bladder cancer cells

description: The raw date for the publish on the journal of Forntiers.
DOI: 10.6084/m9.figshare.20250264.v1
title: The novel antitumor compound clinopodiside A induces cytotoxic autophagy via the signaling of BLK and RasGRP2 in bladder cancer cells

description: The raw date for the publish on the journal of Forntiers.
DOI: 10.5281/zenodo.6609605
title: Codes used in '11-year record of wintertime snow surface energy balance and sublimation at 4863 m a.s.l. on Chhota Shigri Glacier moraine (western Himalaya, India)'

description: This repository is the collection of the codes used in analysis and generating figures for the paper published in The Cryosphere Discussion (https://doi.org/10.5194/tc-2021-386).
DOI: 10.26182/1jcm-4005
title: CFA Human non-human origin species identification from cortical histology dataset
DOI: 10.6084/m9.figshare.20250585.v1
title: ALL DATA.xlsx

description: These data represent the clinical characteristics of our patients in our study regarding the association of HLA class I with disease severity and progression in spondyloarthritis patients at Dr. Soetomo General Hospital, Surabaya - Indonesia.
DOI: 10.6084/m9.figshare.20012717
title: care_benchmark.tar

description: Deprecated. Please use benchmark_v2. benchmark for CARE.
DOI: 10.6084/m9.figshare.20012717.v1
title: care_benchmark.tar

description: Deprecated. Please use benchmark_v2. benchmark for CARE.
DOI: 10.5517/ccdc.csd.cc2920cs
title: CCDC 2117094: Experimental Crystal Structure Determination

description: Related Article: Emma Regincós Martí, Angelos B. Canaj, Tanu Sharma, Anna Celmina, Claire Wilson, Gopalan Rajaraman, Mark Murrie|2022|Inorg.Chem.|61|9906|doi:10.1021/acs.inorgchem.2c00556
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bbyzm
title: CCDC 2155491: Experimental Crystal Structure Determination

description: Related Article: Shasha Jin, Rana Sanii, Bai-Qiao Song, Michael J. Zaworotko|2022|Cryst.Growth Des.|22|4582|doi:10.1021/acs.cgd.2c00471
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bbyyl
title: CCDC 2155490: Experimental Crystal Structure Determination

description: Related Article: Shasha Jin, Rana Sanii, Bai-Qiao Song, Michael J. Zaworotko|2022|Cryst.Growth Des.|22|4582|doi:10.1021/acs.cgd.2c00471
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bbywj
title: CCDC 2155488: Experimental Crystal Structure Determination

description: Related Article: Shasha Jin, Rana Sanii, Bai-Qiao Song, Michael J. Zaworotko|2022|Cryst.Growth Des.|22|4582|doi:10.1021/acs.cgd.2c00471
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bbytg
title: CCDC 2155486: Experimental Crystal Structure Determination

description: Related Article: Shasha Jin, Rana Sanii, Bai-Qiao Song, Michael J. Zaworotko|2022|Cryst.Growth Des.|22|4582|doi:10.1021/acs.cgd.2c00471
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bpx32
title: CCDC 2166004: Experimental Crystal Structure Determination

description: Related Article: Lucia Casali, Luca Mazzei, Renren Sun, Michele R. Chierotti, Roberto Gobetto, Dario Braga, Fabrizia Grepioni, Stefano Ciurli|2022|Cryst.Growth Des.|22|4528|doi:10.1021/acs.cgd.2c00439
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bvsbb
title: CCDC 2170692: Experimental Crystal Structure Determination

description: Related Article: Jie Shi, Qiao-Lin Xu, Yu-Qing Ni, Lin Li, Fei Pan|2022|Org.Lett.|24|4609|doi:10.1021/acs.orglett.2c01721
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.20250816
title: CARE benchmark v2

description: benchmark_v2 for CARE.
DOI: 10.34740/kaggle/dsv/3912818
title: Russian Invasion of Ukraine
DOI: 10.6073/pasta/a6b29dcfbf56ab0946d52205d5f7efc2
title: NBP01 Nitrogen and phosphorus in bulk precipitation at Konza Prairie

description: ‘Measurements include rainfall amounts, nitrate (NO3-N), ammonia (NH4-H), soluble reactive phosphate (SRP), and total nitrogen and phosphorus concentrations in bulk precipitation collected at multiple locations.
DOI: 10.57770/qtyqzs
title: Replication Data for: Machine Learning-Based Risk Prediction Models of Oral Squamous Cell Carcinoma Using Saliva Autoantibody Biomarkers

description: The R codes for generating analysis results in "Machine Learning-Based Risk Prediction Models of Oral Squamous Cell Carcinoma Using Saliva Autoantibody Biomarkers" Sync from https://github.com/DHLab-TSENG/OSCCRiskModel
DOI: 10.6084/m9.figshare.19751441
title: Photosynthesis and Leaf Traits of Tree Species Influenced by Green Manure Associated with Soil Treatments

description: The use of green manure (GM) associated with soil decompaction treatments has shown to be an alternative to improve soil attributes. This study associated the use of GM with tree species nitrogen-fixing and non-nitrogen-fixing (N-fixing and non-N-fixing, respectively), hypothesizing that non-N-fixing species are more beneficial by GM. The experiment was carried out in a disabled clay extraction deposit. Previously, chemical analysis and mechanical resistance to soil penetration was registered in order to characterize the initial soil properties of the experimental site. The soil treatments were scarification (SCA), scarification + harrowing (SCAH), and subsoiling + harrowing (SUBH) with presence/absence of GM (+GM and -GM, respectively) and four native tree species, N-fixing (<i>Dalbergia ecastophyllum</i> (L.) Taub., <i>Inga laurina</i> (Sw.) Willd., and non-N-fixing (<i>Psidium cattleianum</i> Sabine and <i>Schinus terebinthifolius</i> Raddi), were planted. Growth and leaf traits were measured after 6 and 12 months. The response patterns of leaf attributes were well defined in the non-N-fixing species. Over time, GM increases the level of chlorophyll (Chl) in N-fixing species and, consequently, improves the maximum quantum yield for photosystem II (PSII) primary photochemistry (φP<sub>o</sub>), quantum yield for PSII electron transport (φE<sub>o</sub>), the number of active reaction centers (RC/CS<sub>o</sub>), and the performance index (PI/abs). GM increased these same photochemical parameters in non-N-fixing species after 12 months. The samples cultivated in the SCA and SUBH treatments showed a better performance. The species responded in different ways to GM, which improved the leaf traits in non-N-fixing species. GM improved the leaf traits of N-fixing species. The positive effect of GM over time give us a good alternative for fertilization in revegetation areas. Furthermore, our findings shown that the subsoiling promotes the highest soil decompaction, which associated with GM, can be efficiently used in projects of revegetation of degraded areas.
DOI: 10.6084/m9.figshare.19751441.v1
title: Photosynthesis and Leaf Traits of Tree Species Influenced by Green Manure Associated with Soil Treatments

description: The use of green manure (GM) associated with soil decompaction treatments has shown to be an alternative to improve soil attributes. This study associated the use of GM with tree species nitrogen-fixing and non-nitrogen-fixing (N-fixing and non-N-fixing, respectively), hypothesizing that non-N-fixing species are more beneficial by GM. The experiment was carried out in a disabled clay extraction deposit. Previously, chemical analysis and mechanical resistance to soil penetration was registered in order to characterize the initial soil properties of the experimental site. The soil treatments were scarification (SCA), scarification + harrowing (SCAH), and subsoiling + harrowing (SUBH) with presence/absence of GM (+GM and -GM, respectively) and four native tree species, N-fixing (<i>Dalbergia ecastophyllum</i> (L.) Taub., <i>Inga laurina</i> (Sw.) Willd., and non-N-fixing (<i>Psidium cattleianum</i> Sabine and <i>Schinus terebinthifolius</i> Raddi), were planted. Growth and leaf traits were measured after 6 and 12 months. The response patterns of leaf attributes were well defined in the non-N-fixing species. Over time, GM increases the level of chlorophyll (Chl) in N-fixing species and, consequently, improves the maximum quantum yield for photosystem II (PSII) primary photochemistry (φP<sub>o</sub>), quantum yield for PSII electron transport (φE<sub>o</sub>), the number of active reaction centers (RC/CS<sub>o</sub>), and the performance index (PI/abs). GM increased these same photochemical parameters in non-N-fixing species after 12 months. The samples cultivated in the SCA and SUBH treatments showed a better performance. The species responded in different ways to GM, which improved the leaf traits in non-N-fixing species. GM improved the leaf traits of N-fixing species. The positive effect of GM over time give us a good alternative for fertilization in revegetation areas. Furthermore, our findings shown that the subsoiling promotes the highest soil decompaction, which associated with GM, can be efficiently used in projects of revegetation of degraded areas.
DOI: 10.6084/m9.figshare.20250582
title: The zonal eddy heat transport across the Luzon Strait

description: The zonal eddy heat transport derived from the mooring observation with a section (~119.8<sup>o</sup>E) of current-and pressure-recording inverted echo sounders (from July 1 2018 to July 1 2019). The variable "U_EHT" is the zonal eddy heat transport field, its three dimensions correspond to latitude, depth, and time, respectively. The variable "ZEHT" is the accumulated zonal eddy heat transport time series across the Luzon Strait.
DOI: 10.6084/m9.figshare.20250582.v1
title: The zonal eddy heat transport across the Luzon Strait

description: The zonal eddy heat transport derived from the mooring observation with a section (~119.8<sup>o</sup>E) of current-and pressure-recording inverted echo sounders (from July 1 2018 to July 1 2019). The variable "U_EHT" is the zonal eddy heat transport field, its three dimensions correspond to latitude, depth, and time, respectively. The variable "ZEHT" is the accumulated zonal eddy heat transport time series across the Luzon Strait.
DOI: 10.6084/m9.figshare.20251656
title: Obstetrics and gynecology education over the last two decades

description: Education in obstetrics and gynecology (OB/GYN) is crucial for improving women's health. In recent years medical teaching methods have undergone great changes. This study aims to explore the current situation and hot spots of OB/GYN education.
DOI: 10.6084/m9.figshare.20251656.v1
title: Obstetrics and gynecology education over the last two decades

description: Education in obstetrics and gynecology (OB/GYN) is crucial for improving women's health. In recent years medical teaching methods have undergone great changes. This study aims to explore the current situation and hot spots of OB/GYN education.
DOI: 10.5281/zenodo.6805185
title: Data associated with the paper "Plethora of tunable Weyl fermions in kagome magnet Fe3Sn2 thin films"

description: Data associated with the paper "Plethora of tunable Weyl fermions in kagome magnet Fe3Sn2 thin films".
DOI: 10.5281/zenodo.6805184
title: Data associated with the paper "Plethora of tunable Weyl fermions in kagome magnet Fe3Sn2 thin films"

description: Data associated with the paper "Plethora of tunable Weyl fermions in kagome magnet Fe3Sn2 thin films".
DOI: 10.6084/m9.figshare.19368119.v5
title: Additional file 1 of "WormTensor: a clustering method for time-series whole-brain activity data of C. elegans"

description: Cellular labels to interpret the clustering results
DOI: 10.6084/m9.figshare.20097314.v1
title: Additional file 2 of "WormTensor: a clustering method for time-series whole-brain activity data of C. elegans"

description: Cellular labels to interpret the clustering results (all the clustering methods with all the numbers of clusters (2 to 20))
DOI: 10.6084/m9.figshare.20097332.v1
title: Additional file 12 of "WormTensor: a clustering method for time-series whole-brain activity data of C. elegans"

description: P-values of Hypergeometric test and q-value of FDR of all the clustering methods with the optimal numbers of clusters
DOI: 10.6084/m9.figshare.20252196
title: MSALayerFiles.lpkx

description: The layers are polygonlayers. 17 different modelings of the sea level rise are included and based on IPCC (2021) scenarious.
DOI: 10.6084/m9.figshare.20252196.v1
title: MSALayerFiles.lpkx

description: The layers are polygonlayers. 17 different modelings of the sea level rise are included and based on IPCC (2021) scenarious.
DOI: 10.5281/zenodo.6805279
title: Selenium nanoparticles improves memory and synaptic plasticity

description: Dateset
DOI: 10.5281/zenodo.6805278
title: Selenium nanoparticles improves memory and synaptic plasticity

description: Dateset
DOI: 10.6084/m9.figshare.20252016
title: Heart Image Data Set for chatbot to predict need of stent in cardiac treatment

description: The data set consists of Angiogram images of patients visiting on cardiac issues.The zip file has got two folders of Train set and Test set. Each sub folder has got another to folders of Stent and No stent indicating the set of images whic ould require patient to undergo administering of stent or patient can avoid getting stent respectively. There are around 438 images in total out of which 100 are used for testing purpose and reamining for training the ML Model.
DOI: 10.15151/esrf-es-771273976
title: Structural Biology at EMBL Grenoble, IBS-CIBB and IAB

description: The proposals covers a broad range of structural biology projects related to pathogen biology, host-pathogen interactions, RNA biology and structure-based drug development that are carried out by PIs at EMBL Grenoble, IBS-CIBB and IAB. The proposers have long-standing experience in the use, as well as the development of beam lines for macromolecular crystallography and have participated in successive BAG applications over the years, mostly at the ESRF but also at other synchrotrons (e.g. Soleil, Petra III, Diamond, SLS).
DOI: 10.15151/esrf-es-771428191
title: Structural Biology of Macromolecules and Macromolecular complexes from India

description: Structural biology research groups located in India constitute the INDIA-BAG and will utilize MX, SAXS and CryoEM to study different biological macromolecules. Together, these groups address multiple pathways in animals, plants, bacteria and fungi. These studies will provide fundamental mechanistic insight regarding different processes critical for the survival and propagation of the relevant organism. Many groups in the BAG study proteins from pathogens to identify novel intervention points that can be the targeted with small molecule inhibitors to inhibit the growth of the corresponding infectious agents. There are more than 50 groups that are part of this BAG and the allocated beamtime will be available for over 500 young researchers. A brief description of all the research groups is provided in the global summary and a summary of the research contributions involving data collected at ESRF is provided in the last BAG report.
DOI: 10.15151/esrf-es-873732891
title: Structural Biology at EMBL Grenoble, IBS-CIBB and IAB

description: The proposals covers a broad range of structural biology projects related to pathogen biology, host-pathogen interactions, RNA biology and structure-based drug development that are carried out by PIs at EMBL Grenoble, IBS-CIBB and IAB. The proposers have long-standing experience in the use, as well as the development of beam lines for macromolecular crystallography and have participated in successive BAG applications over the years, mostly at the ESRF but also at other synchrotrons (e.g. Soleil, Petra III, Diamond, SLS).
DOI: 10.15151/esrf-es-876485790
title: CryoEM of bacterial conjugation proteins

description: Functional genetic analysis of the tcp locus has revealed that it mediates the conjugative transfer of the toxin and antibiotic resistance plasmids from Clostridiumperfringens. This locus encodes thirteen genes that are required for efficient conjugative transfer of the paradigm tetracycline resistance plasmid, pCW3. The aim of this study is to determine the molecular architecture of the pCW3 DNA transfer machinery.
DOI: 10.15151/esrf-es-819996597
title: Evaluation of inter-phase strains present in as-built and heat treated LPBF AlSi10Mg materials

description: Laser Powder Bed Fused (LPBF) AlSi10Mg materials exhibit increased as-built yield strength when compared to conventional as-built cast products due to the fine silicon network and small grain size resulting from the very fast cooling rates occurring after the laser-induced melting. However, these fast cooling rates lead to the generation of both long-range residual stresses and short range intergranular and interphase stresses, the latter between the Al-alpha matrix and the Si eutectic phase. To this date, the role of the Al/Si interphase stresses and strains is not well elucidated. In order to improve our understanding of the potential role of these short-range stresses on fatigue crack propagation, it is necessary to characterise their magnitude relative to the long-range stresses. This proposal intends to examine the interphase strains present in as-built and heat treated LPBF AlSi10Mg between the Al-alpha matrix and the Si phase.
DOI: 10.5281/zenodo.6805273
title: Supplementary material for "Oikopleura dioica, the cosmopolitan appendicularian hides multiple cryptic species around the globe"

description: 18S and ITS sequences used to estimate phylogenetic trees for "Oikopleura dioica, the cosmopolitan appendicularian hides multiple cryptic species around the globe." To identify 18S rDNA genes from genome sequences, we searched genome sequences for the best-hit matches to the Rfam models for the eukaryotic small subunit (SSU; RF01960) and large subunit (LSU; RF02543) using cmsearch of the Infernal package (v.1.1.4). The SSU and LSU models from Rfam were downloaded in April 2021. The internal transcribed spacer (ITS) regions were obtained by extracting the region between SSU and LSU.<strong> </strong>Multiple sequence alignments for the 18S and ITS regions were created with MUSCLE (v5) within Seaview (v.3.2).
DOI: 10.5281/zenodo.6805272
title: Supplementary material for "Oikopleura dioica, the cosmopolitan appendicularian hides multiple cryptic species around the globe"

description: 18S and ITS sequences used to estimate phylogenetic trees for "Oikopleura dioica, the cosmopolitan appendicularian hides multiple cryptic species around the globe." To identify 18S rDNA genes from genome sequences, we searched genome sequences for the best-hit matches to the Rfam models for the eukaryotic small subunit (SSU; RF01960) and large subunit (LSU; RF02543) using cmsearch of the Infernal package (v.1.1.4). The SSU and LSU models from Rfam were downloaded in April 2021. The internal transcribed spacer (ITS) regions were obtained by extracting the region between SSU and LSU.<strong> </strong>Multiple sequence alignments for the 18S and ITS regions were created with MUSCLE (v5) within Seaview (v.3.2).
DOI: 10.5281/zenodo.6786328
title: Imaging and phase-locking of non-linear spin waves

description: All primary data and simulation scripts used in the manuscript and SI
DOI: 10.6084/m9.figshare.20252605.v1
title: Additional file 2 of Staff-to-resident abuse in nursing homes: a scoping review

description: Additional file 2: Supplementary Material S2. Raw data per study
DOI: 10.6084/m9.figshare.20252478
title: Substantive bias and variation

description: The dataset contains raw data in categorical learning conditions, variable learning conditions and control condition.
DOI: 10.6084/m9.figshare.20252605
title: Additional file 2 of Staff-to-resident abuse in nursing homes: a scoping review

description: Additional file 2: Supplementary Material S2. Raw data per study
DOI: 10.6084/m9.figshare.20252478.v1
title: Substantive bias and variation

description: The dataset contains raw data in categorical learning conditions, variable learning conditions and control condition.