cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.8ckrqa
title: Occurrence Download

description: A dataset containing 27218 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vitellaria paradoxa C.F.Gaertn."
 ]
}

 The dataset includes 27218 records from 152 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000029-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cbxj88
title: Occurrence Download

description: A dataset containing 5780 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rana luteiventris Thompson, 1913"
 ]
}

 The dataset includes 5780 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000030-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/xrx9jdhrn8.2
title: Hypusinated and unhypusinated isoforms of the translation factor eIF5A exert distinct effects in models of pancreas development and function

description: This Prism file contains all raw data that are included in the manuscript by Anderson et al.
DOI: 10.17632/dfydsrkx5t.1
title: LINF_320006600

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/cdwmr87j7c.1
title: Infrared responsive PVDF filtration membrane prepared with quince seed extract

description: In this study, specific infrared light energy, which is frequently used in medical applications, has been adapted to filtration membranes. Infrared light absorber AgNPs were prepared according to the green synthesis method. Ag-PVDF (PA) and Graphite-doped Ag-G-PVDF (PAG) membranes were prepared by precipitating AgNPs with quince seed extract in PVDF/DMF solution medium. The flow, Methyl orange and BSA filtrations of the membranes were examined in the presence of 8 W 808 nm Infrared light. It was understood that the membranes were sensitive to light and showed flow/rejection performance by preventing pollution accumulation with photothermal-photocatalytic effect.XRD raw data for structural characterization of composites are shared. It was understood from crystal diffraction patterns that AgNP was successfully anchored to the structure. Detailed explanations and analysis results are given in the publication cited in this dataset.
DOI: 10.17632/7ns8z5ttsk
title: LDHU3_19.1770

description: Cysteine peptidase A | CPA; Leishmania donovani (HU3 strain)
DOI: 10.17632/7ns8z5ttsk.1
title: LDHU3_19.1770

description: Cysteine peptidase A | CPA; Leishmania donovani (HU3 strain)
DOI: 10.17632/nkvxj6y2sw.1
title: Marine fresh carbon pool dominates summer carbonaceous aerosols over Arctic Ocean

description: 2.1 Sampling information
Aerosol samples (n=109) were collected by the Chinese Research Vessel (R/V) Xuelong on three Arctic cruises during the summer (July-September) of 2014, 2016, and 2018. Detailed information about three Arctic cruises are provided in Table S1. Total suspended particulate (TSP) samples and field blanks were collected using large-flow air samplers at a flow rate of 1.05 m3/min. The samples were collected for 24h, while the field blanks were collected for 1min. Large-flow air samplers were placed on the top deck of R/V Xuelong (upstream of the exhaust) to avoid contamination. All samples and blanks were collected with a quartz filter and stored in a refrigerator at - 4°C until laboratory analysis. We divided the sea areas passed by the route into three regions (Northwest Pacific, Bering Sea, and Arctic Ocean) according to latitude. 
2.2 Chemical analysis
Carbonaceous matter in aerosols was analyzed using a multi-band thermal-optical carbon analyzer (DRI Model 2015, Desert Research Institute, USA). A small disc with an area of 0.5 cm3 was obtained with the filter samples and fed into the instrument to measure organic carbon (OC) and elemental carbon (EC). The IMPROVE_A warming procedure was used to analyze the OC and EC components of the filter samples, and total carbon (TC) was obtained by calculating the sum of OC and EC. During carbonaceous matter measurements, the effects of carbonate were ignored according to previous studies [Cavalli et al., 2010; Sciare et al., 2003]. Considering the low levels of carbonate in marine aerosol [Kundu and Kawamura, 2014] and referring to the experimental method of related studies [Ceburnis et al., 2011; Kimitaka Kawamura et al., 2012; Xiao et al., 2018], the effect of carbonate is not considered in this study regarding aerosol carbonaceous components.

The δ13C values of TC were determined using an elemental analyzer (EA; Flash 2000; Thermo) in conjunction with an isotope ratio mass spectrometer (IRMS; MAT253; Thermo). Filter samples (3.14 cm2 area) were wrapped in a tin cup and subsequently burned at 980°C. During combustion, all carbonaceous materials were converted to CO2, and these gaseous components were separated with a packed column in a gas chromatograph, mounted in the EA before measurement using IRMS. Calibrations of δ13CTC were made using the international standard IAEA-600 (-27.771‰) and the working standard urea (-41.30 ± 0.04‰).
DOI: 10.6084/m9.figshare.26954023
title: Dataset and Code for leaf size and development paper

description: This is the dataset for the paper "<b>The determination of leaf size on the basis of developmental traits</b>"
DOI: 10.6084/m9.figshare.26954023.v1
title: Dataset and Code for leaf size and development paper

description: This is the dataset for the paper "<b>The determination of leaf size on the basis of developmental traits</b>"
DOI: 10.17632/mjzrd6cx8b.1
title: LINF_350032900

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/3p6v2dwf4x.1
title: LDHU3_13.0570

description: Protein of unknown function (DUF1014); Leishmania donovani (HU3 strain)
DOI: 10.17632/b589x8xg2h
title: LDHU3_19.1810

description: Oxidoreductase-like protein; Leishmania donovani (HU3 strain)
DOI: 10.17632/b589x8xg2h.1
title: LDHU3_19.1810

description: Oxidoreductase-like protein; Leishmania donovani (HU3 strain)
DOI: 10.17632/npck9skpj7.1
title: LDHU3_13.0510

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/c6rtjbdymy.1
title: Replication codes for "Spatial Equilibria: The Case of Two Regions" by Kucheryavyy, Lyn, and Rodríguez-Clare

description: This project contains replication codes for "Spatial Equilibria: The Case of Two Regions" (2024) by Kucheryavyy, Lyn, and Rodríguez-Clare
DOI: 10.15468/dl.h6dv8g
title: Occurrence Download

description: A dataset containing 1029 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Olearia avicenniifolia (Raoul) Hook.fil.",
 "Year 2010-2025"
 ]
}

 The dataset includes 1029 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000032-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u9z462
title: Occurrence Download

description: A dataset containing 4381 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Solorina crocea (L.) Ach."
 ]
}

 The dataset includes 4381 records from 133 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000033-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26165/juelich-data/hreygs
title: Data for the paper: Deciphering the guanidinium cation: Insights into thermal diffusion

description: The data set contains thermodiffusive data of four guanidinium salts (thiocyanate, iodide, chloride, and carbonate) in solutions with concentrations ranging from 1 to 3 mol/kg measured in a temperature range between 15°C and 35°C. Published in Rudani, B. A.; Jakubowski, A.; Kriegs, H.; Wiegand, S. Deciphering the guanidinium cation: Insights into thermal diffusion. The Journal of Chemical Physics 2024, 160 (21), 214502. DOI: 10.1063/5.0215843. The data are available at Rudani, B. A.; Jakubowski, A.; Kriegs, H.; Wiegand, S. (2024). Data for the paper: Deciphering the guanidinium cation: Insights into thermal diffusion [Data set]. Zenodo. https://doi.org/10.5281/zenodo.11192757
DOI: 10.17632/ypxnzbjk45.1
title: Filtered datasets of benzene, ethanol, formic acid dimer and fomepizole

description: The uploaded datasets contain filtered geometries of benzene (BZ), ethanol (ETL), formic acid dimer (FAD), and fomepizole (FPL) used in a recently submitted paper to demonstrate the transferability of hyperparameters in anisotropic GPR models. These models are trained on atomic energies and charges (but in general any multipole moment) of topological quantum atoms in roughly 10 000 conformations of each molecule of interest. Once trained, these models were deployed in FFLUX simulations which suggested that transfer learning models perform as good as direct learning ones, despite being trained much faster (up to an order of magnitude). The datasets can be used to train any machine learning model that will reproduce atomic energies and multipole moments. It also contains total electronic energies of each conformation computed at the B3LYP/aug-cc-pVTZ [BZ and ETL] and B3LYP/6-31+G(d,p) [FAD and FPL] levels of theory. These can be used directly to create surrogate potential energy surface (PES) models.
DOI: 10.15468/dl.gkazhq
title: Occurrence Download

description: A dataset containing 4135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Benin",
 "TaxonKey is Triplochiton scleroxylon K.Schum."
 ]
}

 The dataset includes 4135 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000036-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p2djnb
title: Occurrence Download

description: A dataset containing 2297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Benin",
 "TaxonKey is Pterocarpus erinaceus Poir.",
 "Year 1000-2008"
 ]
}

 The dataset includes 2297 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000037-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/rjs429tkz9.1
title: A genetically-encoded fluorescent biosensor for visualization of acetyl-CoA in live cells, Smith et al, PancACe HeLa time lapse experiments, original images

description: These data are raw image files from fluorescence microscopy analysis of HeLa cells in the study "A genetically-encoded fluorescent biosensor for visualization of acetyl-CoA in live cells," Smith et al. The processed data derived from these images is provided in the manuscript and in the supplemental data files published with it. Likewise, detailed protocols for data collection and image analysis are provided in the manuscript and supplemental files. The Python script used for batch processing of images via Fiji is available at https://github.com/Adamcolligan/pancace (DOI: 10.5281/zenodo.14532573). These images are from the time lapse experiments described in Figure S10 and Data File S5 of the publication. 

The files are in the .tif format as they were directly exported from Leica Application Suite X. 

Important filename information:

Well- Every filename has a designation for the well in the microplate that was imaged (e.g., B2, B3, B4, C2). The spreadsheet included herein and Data File S5 of the publication provide a key for which well contained which experimental condition. Note that some wells were not utilized in every experiment and that some wells contained experimental conditions that were not ultimately published and so were excluded from inclusion herein.

Position- The position denotes the area within the well that was imaged ("Position1"). Typically, 10 positions were collected per well. 

Time- The order in which the image was taken is described by "tx" in the filename (e.g., t00, t01, t02). The microscope cycled through measuring all the positions/wells in the same order in an interval of 15 min total. Images without any "tx" in the filename were taken before the media change was performed to begin the time lapse experiment. 

Channel designation- There are two images for each Position within each Well. Channel 00 ("ch_00") denotes the image collected with excitation light of 405 nm. Channel 01 ("ch_01") denotes the image collected with excitation light of 488 nm. For both channel images, light of 515 nm was detected.
DOI: 10.17632/72k5vcwk7n.1
title: 4/24 Extended Wake EEG and Pupillometry

description: This is the data used in "How and when EEG reflects changes in neuronal connectivity due to time awake" (Snipes et al. 2023, iScience). The purpose of this dataset was to replicate Finelli et al. (2000, Neuroscience), and investigate what explains the changes in theta power with time awake. The dataset includes data from 18 young healthy adults recruited in Switzerland, collected in 2020. Participants performed three "tasks": a fixation, an auditory oddball, and standing with eyes closed, recorded at 12 timepoints (see publication). 

For space reasons, only some of the preprocessed data is included here. The rest of the data is available upon request. Included here are: the detected EEG bursts from all conditions (/Bursts), saved as both a .csv file and a structure saved in a .mat file; the preprocessed 123 channels EEG data of the Fixation condition (/Fixation), the raw pupillometry from the Fixation and Oddball (/Pupils), and the final individual averages used in the statistics of Table 1 and the scatterplot figures (/Metadata/Final_Data.csv). Anonymized information about the participants is in /Metadata/Participants.csv, information of the various fields of the burst structure are in /Metadata/BurstFieldData.csv, and values for normalizing pupillometry for each individual are in /Metadata/IrisDiameters.csv.
DOI: 10.17632/cpgwv7sys7.1
title: LDHU3_15.1920

description: Hypothetical protein - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/g58vhcykcj.1
title: Sediment load under diverse climate change scenarios

description: Climate change directly affects the intensity of surface erosion and the sediment load in rivers. Currently, there are many climate models in use in Europe, and their forecasts differ to some extent. This means that the selection of models and their ensembles in environmental analyzes will translate into the predicted sediment load, which is important for mitigating the siltation of rivers and dammed reservoirs. Using SWAT model we performed research on the impact of adopting various climate models on the sediment load flowing into the dammed reservoir. We included three types of comparison: A. We adopted point forecasts for the nearest large city - Kraków and areal forecasts for the catchment area. B. We compared the adopted reference period, which is a source of precipitation change for the climate scenarios. C. We have put together various types of ensembles - consisting of wet and dry models. We present the research results as a database in individual sheets of the included Excel file. The file contains four sheets: 1.Location: We present a graphic of the location of the calculation point for which the research was carried out. It contains a map of Poland and the Carpathians with the studied catchment marked (red). The next drawing highlights the analyzed catchment area of Raba Górna flowing into the dammed reservoir, with a drinking water intake, Dobczyce. The graphics also include points for which point and areal approach scenarios were performed. The third figure on the graphic is the results of modeling average monthly sediment load for base scenario against the average precipitation monthly sums. 2. Climate change predictions: First, the reader should pay attention to the graphics. It presents all implemented scenarios (outer circle with corresponding colors) and the way they are named (inside the circle). It also includes which scenarios belong to the point approach (P) and which are areal (A) and what was the reference period, of 10 or 30 years. The table in this sheet presents the changes of precipitation introduced in the model using the delta change tool in model SWAT. 3. Scenarios Database - Av.: The spreadsheet presents the modeling results as average monthly sediment loads for each scenario. The data is presented in a table and a chart enabling quick comparison of annual cycle trends and their changes in various scenarios. 4. Scenarios Database - Y: The last sheet presents the full monthly sediment load data sets for all scenarios. The reader's attention is focused on the interactive pivot chart. The user should select the scenarios interested in, years or months. It is then possible to thoroughly analyze changes in the modeling results of individual monthly values and time shifts resulting from the introduction of various types of ensemble climate models. In the background there are values that can be used by the reader for their own comparative analyses, provided that the source of the data is properly cited.
DOI: 10.17632/njbs4sn3xp.1
title: A.I. industrial process optimization

description: This dataset has been created to demonstrate the systematic review carried out for the article titled: "AI in industrial optimization". Current applications of A.I. are described. to optimize processes in various industries
DOI: 10.17632/pxjcydnt6c.1
title: Arsenic adsorption on iron (oxyhydr)oxides: Is As(III) less readily immobilized than As(V)?

description: Research Data.
DOI: 10.17632/hgy8rxmj62.2
title: Genes whose expression are affected by MESH1 knockdown in H1975

description: MESH1 is the metazoan homolog of bacterial SpoT involved in the bacterial stringent response. To understand the functional role of MESH1 in cancer cells, we knockdown MESH1 in H1975 cells with independent siRNAs and performed transcriptomic analysis to determine the transcriptional response to MESH1 knockdown [2]. Analysis of the first array set (Table 1) revealed a prominent transcriptional repression of TAZ, but not YAP, upon MESH1 knockdown. to determine the relevant importance of the TAZ repression in the transcriptome response to MESH1 knockdown, we performed a second profiling experiment of MESH1 knockdown in H1975 expressing TAZS89A, a constitutive form of TAZ. The comparison of the transcriptional response to MESH1 knockdown with or without TAZS89A allowed us to separate TAZ-dependent and TAZ-independent effects of the transcriptional changes of MESH1 knockdown (Table 2).

Table 1: List of differentially expressed genes in H1975 upon the knockdown of MESH1 by three independent siRNAs targeting MESH1. 

Table 2: List of differentially expressed genes in MESH1-knockdown H1975 in H1975 with or without TAZS89A restoration
DOI: 10.17632/625p6n7c9b.1
title: 2023 Applied Cat A Potassium and cobalt double-doped ferrierites as a new class of soot oxidation catalysts

description: Data related to the article Potassium and cobalt double-doped ferrierites as a new class of soot oxidation catalysts, 2023, Applied Catalysis A: General
https://doi.org/10.1016/j.apcata.2023.119469
DOI: 10.17632/czzy824tcy.1
title: Geochemical and point counting analysis data of Aptian series from Vercors, France

description: This dataset includes results of the analysis of 110 samples from four outcrops from the Vercors region of southern France. Samples are dated to the early and late Aptian, Early Cretaceous. Samples were processed for elemental and isotope geochemistry using x-ray fluorescence spectrometry and isotope ratio mass spectrometry, respectively. Point counting analysis was performed using scanned whole thin sections loaded into JMicroVision; 250 points were counted in each thin section.
DOI: 10.17632/wdkytvwn65.2
title: Clumped isotope data for Early Triassic brachiopods and whole rock carbonates from Oman (NeoTethys)

description: This repository contains the research data associated with the research paper titled: "Carbonate Clumped Isotope Constraints on Early Triassic NeoTethyan Seawater Oxygen Isotope Compositions and Temperatures".

The dataset includes results from carbonate clumped isotope analysis of fossil brachiopods and whole rock carbonates which were deposited in the NeoTethys Ocean during the Early Triassic. In addition, data for rare earth elements analysis as well as element/Ca (Mg/Ca and Sr/Ca) are included.
DOI: 10.15468/dl.84byhb
title: Occurrence Download

description: A dataset containing 1096 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bolitoglossa mexicana Duméril, Bibron & Duméril, 1854"
 ]
}

 The dataset includes 1096 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000038-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/ksvccgpfrd.1
title: Dataset for Probabilistic Hesitant Fuzzy Linear Regression Model

description: A decision matrix containing the values used in study on making group decision with the framework of a probabilistic hesistant fuzzy linear regression model
DOI: 10.15468/dl.vtz4mk
title: Occurrence Download

description: A dataset containing 9393 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Marsilea quadrifolia L."
 ]
}

 The dataset includes 9393 records from 478 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000039-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/bpktp7xcxb.1
title: Dataset for Pythagorean Fuzzy Entropy

description: A decision matrix containing the values used in study on a group decision-making using Pythagorean fuzzy entropy and the complex proportional assessment
DOI: 10.17632/69pgz98tgm.1
title: LINF_350034400

description: dynein light chain
Leishmania infantum (strain JPCM5)
DOI: 10.17632/smysx5p8yn.1
title: Dataset for "Colour crowding explained as adaptive spatial integration"

description: Dataset for paper: Colour crowding explained as adaptive spatial integration
Please refer to the readme file for a key to the variables included in Matlab files.
Below an abstract of the work:
Crowding is the inability to recognize an object in clutter, classically considered a fundamental low-level bottleneck to object recognition. Recently, however, it has been suggested that crowding, like predictive phenomena such as serial dependence, may result from optimizing strategies that exploit redundancies in natural scenes. This notion leads to several testable predictions, such as crowding being greater for non-salient targets and, counter-intuitively, that flanker interference should be associated with higher precision in judgements, leading to lower overall error rate. Here we measured colour discrimination for targets flanked by stimuli of variable colour. The results verified both predictions, showing that while crowding can affect object recognition, it may be better understood not as a processing bottleneck, but as a consequence of mechanisms evolved to efficiently exploit the spatial redundancies of the natural world. Analyses of reaction times of judgments shows that the integration occurs at sensory, rather than decisional levels.