cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.v5051j2
title: Data from: A comprehensive analysis of autocorrelation and bias in home range estimation

description: Home range estimation is routine practice in ecological research. While
 advances in animal tracking technology have increased our capacity to
 collect data to support home range analysis, these same advances have also
 resulted in increasingly autocorrelated data. Consequently, the question
 of which home range estimator to use on modern, highly autocorrelated
 tracking data remains open. This question is particularly relevant given
 that most estimators assume independently sampled data. Here, we provide a
 comprehensive evaluation of the effects of autocorrelation on home range
 estimation. We base our study on an extensive dataset of GPS locations
 from 369 individuals representing 27 species distributed across 5
 continents. We first assemble a broad array of home range estimators,
 including Kernel Density Estimation (KDE) with four bandwidth optimizers
 (Gaussian reference function, autocorrelated-Gaussian reference function
 (AKDE), Silverman's rule of thumb, and least squares
 cross-validation), Minimum Convex Polygon, and Local Convex Hull methods.
 Notably, all of these estimators except AKDE assume independent and
 identically distributed (IID) data. We then employ half-sample
 cross-validation to objectively quantify estimator performance, and the
 recently introduced effective sample size for home range area estimation
 ($\hat{N}_\mathrm{area}$) to quantify the information content of each
 dataset. We found that AKDE 95\% area estimates were larger than
 conventional IID-based estimates by a mean factor of 2. The median number
 of cross-validated locations included in the holdout sets by AKDE 95\% (or
 50\%) estimates was 95.3\% (or 50.1\%), confirming the larger AKDE ranges
 were appropriately selective at the specified quantile. Conversely,
 conventional estimates exhibited negative bias that increased with
 decreasing $\hat{N}_\mathrm{area}$. To contextualize our empirical
 results, we performed a detailed simulation study to tease apart how
 sampling frequency, sampling duration, and the focal animal's
 movement conspire to affect range estimates. Paralleling our empirical
 results, the simulation study demonstrated that AKDE was generally more
 accurate than conventional methods, particularly for small
 $\hat{N}_\mathrm{area}$. While 72\% of the 369 empirical datasets had
 \textgreater1000 total observations, only 4\% had an
 $\hat{N}_\mathrm{area}$ \textgreater1000, where 30\% had an
 $\hat{N}_\mathrm{area}$ \textless30. In this frequently encountered
 scenario of small $\hat{N}_\mathrm{area}$, AKDE was the only estimator
 capable of producing an accurate home range estimate on autocorrelated
 data.
description: Empirical GPS tracking
 dataAnonymised, empirical
 tracking data used to estimate home range areas based on various home
 range estimators.Anonymised_Data.zip
DOI: 10.5061/dryad.31vb2c3
title: Data from: The ephemerality of secondary forests in southern Costa Rica

description: Secondary forests are increasingly recognized for conserving biodiversity
 and mitigating global climate change, but these and other desired outcomes
 can only be achieved after decades of regeneration, and secondary forests
 are frequently recleared before they recover to predisturbance conditions.
 We used a time series of aerial photographs (1947-2014) to evaluate
 multidecadal persistence of secondary forests across a 320 sq. km
 landscape in southern Costa Rica. Secondary forests had relatively short
 lifespans, with 50% recleared within 20 years and 85% recleared within 54
 years of when they were first observed. Larger forest fragments and
 forests near rivers had a lower reclearance hazard, but forest persistence
 did not differ over time, indicating that regional forest regeneration may
 be generally ephemeral. Costa Rica has made an international commitment to
 restore 1 million ha of degraded land by 2020. Depending on how this is
 achieved, only half that target may remain forested by 2040.
description: EphemeralForestsThese data describe forest cover, forest persistence, and potential spatial covariates of forest persistence in southern Costa Rica from 1947-2014. data_EphemeralForests.csv contains the data for each forest. R_EphemeralForests.R contains the R code used to perform the analyses. LC_Final_ReidFaganSHARE_expWGS84.zip contains a shapefile with each forests's location and information about persistence (further metadata is included in the shapefile and so is not described here).
DOI: 10.5281/zenodo.18387842
title: DATASET: User Adherence & Attrition in a Non-Guided Digital Yoga Intervention (Open Access, 2014-2025)

description: This dataset presents longitudinal user telemetry from a non-guided digital Yoga intervention hosted exclusively on an open-access video platform (YouTube).

The data spans an 11-year observation period (Aug 2014 – Dec 2025).

The intervention follows the standardized curriculum of the book "Yoga en casa: Curso para principiantes" (Rollán, 2017), progressing through theoretical foundations (requirements, precautions) to practical execution (Pranayama, Asanas and sequences).

Unlike previous datasets in this series (Rollán, 2026a-b), this intervention lacks a Learning Management System (LMS) counterpart, representing a "pure" algorithmic consumption environment.

The dataset includes granular video retention metrics, playlist attrition rates, and longitudinal views, offering real-world evidence on self-directed physical activity adherence in the absence of financial or instructional accountability.

 

REFERENCES

- Rollán-González, A. (2017).

Yoga en casa: Curso para principiantes. (1 ed.). Autor. ISBN: 9781545284803

- Rollán-González, A. (2026a). Dataset: User Telemetry & Cross-Platform Metrics in a Digital Relaxation Intervention (2014-2025) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.18371711

- Rollán-González, A. (2026b). DATASET: User Telemetry & Cross-Platform Metrics in a Digital Mindfulness Intervention (2018-2025) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.18371758
DOI: 10.5281/zenodo.18387841
title: DATASET: User Adherence & Attrition in a Non-Guided Digital Yoga Intervention (Open Access, 2014-2025)

description: This dataset presents longitudinal user telemetry from a non-guided digital Yoga intervention hosted exclusively on an open-access video platform (YouTube).

The data spans an 11-year observation period (Aug 2014 – Dec 2025).

The intervention follows the standardized curriculum of the book "Yoga en casa: Curso para principiantes" (Rollán, 2017), progressing through theoretical foundations (requirements, precautions) to practical execution (Pranayama, Asanas and sequences).

Unlike previous datasets in this series (Rollán, 2026a-b), this intervention lacks a Learning Management System (LMS) counterpart, representing a "pure" algorithmic consumption environment.

The dataset includes granular video retention metrics, playlist attrition rates, and longitudinal views, offering real-world evidence on self-directed physical activity adherence in the absence of financial or instructional accountability.

 

REFERENCES

- Rollán-González, A. (2017).

Yoga en casa: Curso para principiantes. (1 ed.). Autor. ISBN: 9781545284803

- Rollán-González, A. (2026a). Dataset: User Telemetry & Cross-Platform Metrics in a Digital Relaxation Intervention (2014-2025) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.18371711

- Rollán-González, A. (2026b). DATASET: User Telemetry & Cross-Platform Metrics in a Digital Mindfulness Intervention (2018-2025) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.18371758
DOI: 10.5061/dryad.g12p0j2
title: Data from: Reconciling nutritional geometry with classical dietary restriction: effects of nutrient intake, not calories, on survival and reproduction

description: Dietary restriction (DR) is one of the main experimental paradigms to
 investigate the mechanisms that determine lifespan and ageing. Yet, the
 exact nutritional parameters responsible for DR remain unclear. Recently,
 the advent of the geometric framework of nutrition (GF), has refocussed
 interest from calories to dietary macronutrients. However, GF experiments
 focus on invertebrates, with the importance of macronutrients in
 vertebrates still widely debated. This has led to the suggestion of a
 fundamental difference in the mode of action of DR between vertebrates and
 invertebrates, questioning the suggestion of an evolutionarily conserved
 mechanism. The use of dietary dilution rather than restriction in GF
 studies makes comparison with traditional DR studies difficult. Here,
 using a novel non model vertebrate system (the stickleback fish,
 Gasterosteus aculeatus), we test the effect of macronutrient versus
 calorie intake on key fitness related traits, both using the GF and
 avoiding dietary dilution. We find that the intake of macronutrients
 rather than calories determines both mortality risk and reproduction. Male
 mortality risk was lowest on intermediate lipid intakes and female risk
 was generally reduced by low protein intakes. The effect of macronutrient
 intake on reproduction was similar between the sexes, with high protein
 intakes maximising reproduction. Our results provide, to our knowledge,
 the first evidence that macronutrient, not caloric, intake predicts
 changes in mortality and reproduction in the absence of dietary dilution.
 This supports the suggestion of evolutionary conservation in the effect of
 diet on lifespan, but via variation in macronutrient intake rather than
 calories.
description: Data File Key
 Key for all data
 files Data
 file key.docx Moatt et al
 Script R script for all
 analyses   
 Moatt_et_al_Data_S1 Updated Version of the Mortality Data   Moatt_et_al_Data_S2 Mortality prediction Males - Period 1   Moatt_et_al_Data_S2B Mortality prediction Males - Period 5   Moatt_et_al_Data_S3 Mortality prediction Females - Period 1   Moatt_et_al_Data_S4 Mortality prediction Females - Period 5   Moatt_et_al_Data_S5 Updated Version of the Courtship Data   Moatt_et_al_Data_S6 Updated Version of the Egg Data   Moatt_et_al_Data_S7 Updated Version of the Sex-differences in reproduction   Moatt_et_al_Data_S8 Updated Version of the Territory Defense Data   Moatt_et_al_Data_S9 Nesting Data   Moatt_et_al_Data_S10 Updated Version of the Reproductive Senescence Data   Moatt_et_al_Data_S11 Age First and Age Last predictions   Moatt_et_al_Data_S12 Age Last model predictions   Moatt_et_al_Data_S13 Predictions for Sex-specific reproductive senescence   Moatt_et_al_Data_S14 Nuptial colour data   Moatt_et_al_Data_S15 Updated Version of the Length, Weight and Condition Index data.   Moatt_et_al_Data_S16 Intake Data   Moatt_et_al_Data_S17 Updated Version of the Lifespan data for Fig S1
DOI: 10.5061/dryad.72qb1k2
title: Data from: Competition alters seasonal resource selection and promotes use of invasive shrubs by an imperiled native cottontail

description: 1. Many ecosystems face multiple invaders, and interactions among invasive
 and native species may complicate conservation efforts for imperiled
 species. Examination of fine-scale resource selection can be used to
 detect patterns in habitat selection resulting from species interactions
 and assess the value of specific resources, including invasive plants, to
 wildlife. 2. We used animal location data with mixed-effects resource
 selection models to examine seasonal competitive interactions and
 species-specific selection for forage and cover resources by an imperiled
 native lagomorph, the New England cottontail Sylvilagus transitionalis and
 its non-native competitor, the eastern cottontail S. floridanus in the
 eastern Hudson Valley, NY. 3. We found evidence that resource selection by
 New England cottontails depended on the relative prevalence of eastern
 cottontails to New England cottontails. Where eastern cottontails were
 less prevalent New England cottontail selected for resources
 characteristic of early-successional shrublands. Where eastern cottontails
 were more prevalent, New England cottontails selected for resources
 characteristic of later-successional shrublands. 4. New England cottontail
 use of certain invasive shrubs depended on the prevalence of eastern
 cottontails relative to New England cottontails, suggesting response to
 invasive plants is confounded by interactions with a non-native
 competitor. 5. Our results further emphasize the need for conservation
 efforts to consider invasive management within the ecosystem context. We
 demonstrate the utility of resource selection studies to assist in this
 regard by exploring competitive interactions in the absence of removal
 studies, while simultaneously assessing the impact of habitat components
 such as invasive vegetation on species of conservation concern. 6.
 Synthesis and applications Resource selection studies can be directly
 applied to inform ongoing species conservation where multiple invaders are
 present or where species interactions influence resource selection.
 Fine-scale assessments of resource selection, similar to those presented
 here, can be used to selectively manage habitat to benefit desired species
 within the ecosystem context.
description: Cottontail resource
 selection dataThis includes the data
 used to analyze resource selection of cottontails based on the associated
 publicationCheeseman_et_al._Cottontail_RSF_Data.csv
DOI: 10.5061/dryad.10r1pt0
title: Data from: Molecular insights into genome-wide association studies of chronic kidney disease-defining traits

description: Genome-wide association studies (GWAS) have identified &gt;100 loci of
 chronic kidney disease-defining traits (CKD-dt). Molecular mechanisms
 underlying these associations remain elusive. Using 280 kidney
 transcriptomes and 9958 gene expression profiles from 44 non-renal tissues
 we uncover gene expression partners (eGenes) for 88.9% of CKD-dt GWAS
 loci. Through epigenomic chromatin segmentation analysis and variant
 effect prediction we annotate functional consequences to 74% of these
 loci. Our colocalisation analysis and Mendelian randomisation in
 &gt;130,000 subjects demonstrate causal effects of three eGenes
 (NAT8B, CASP9 and MUC1) on estimated glomerular filtration rate. We
 identify a common alternative splice variant in MUC1 (a gene responsible
 for rare Mendelian form of kidney disease) and observe increased renal
 expression of a specific MUC1 mRNA isoform as a plausible molecular
 mechanism of the GWAS association signal. These data highlight the
 variants and genes underpinning the associations uncovered in GWAS of
 CKD-dt.
description: Gene expression
 dataNormalised gene
 expression values from RNA sequencing. Gene-level TPM values from Kallisto
 were log-transformed, normalised by robust quantile normalisation,
 outliers replaced with imputed values and transformed using the rank-based
 inverse normal transformation method. Please see methods of linked
 publication for further details.TRANSLATE-genes.txt
DOI: 10.5061/dryad.4272kh0
title: Data from: Drought legacies are dependent on water table depth, wood anatomy, and drought timing across the eastern U.S.

description: Severe droughts can impart long-lasting legacies on forest ecosystems
 through lagged effects that hinder tree recovery and suppress whole-forest
 carbon uptake. However, the local climatic and edaphic factors that
 interact to affect drought legacies in temperate forests remain unknown.
 Here, we pair a dataset of 143 tree ring chronologies across the mesic
 forests of the eastern U.S. with historical climate and local soil
 properties. We found legacy effects to be widespread, the magnitude of
 which increased markedly in diffuse porous species, sites with deep water
 tables, and in response to late-season droughts (August – September).
 Using an ensemble of downscaled climate projections, we additionally show
 that our sites are projected to drastically increase in water deficit and
 drought frequency by the end of the century, potentially increasing the
 size of legacy effects by up to 65% and acting as a significant process
 shaping forest composition, carbon uptake, and mortality.
description: SK_Ecology Letters
 codeSK_Ecology Letters
 dataSK_Ecology Letters
 sites
DOI: 10.5061/dryad.f40f4qg
title: Data from: Sexual dimorphism and heightened conditional expression in a sexually selected weapon in the Asian rhinoceros beetle

description: Among the most dramatic examples of sexual selection are the weapons used
 in battles between rival males over access to females. As with ornaments
 of female choice, the most “exaggerated” sexually selected weapons vary
 from male to male more widely than other body parts (hypervariability),
 and their growth tends to be more sensitive to nutritional state or
 physiological condition compared with growth of other body parts
 (‘heightened’ conditional expression). Here we use RNA-seq analysis to
 build on recent work exploring these mechanisms in the exaggerated weapons
 of beetles, by examining patterns of differential gene expression in
 exaggerated (head and thorax horns) and non-exaggerated (wings, genitalia)
 traits in the Asian rhinoceros beetle, Trypoxylus dichotomus. Our results
 suggest that sexually dimorphic expression of weaponry involves
 large-scale changes in gene expression, relative to other traits, while
 nutrition driven changes in gene expression in these same weapons are less
 pronounced. However, although fewer genes overall were differentially
 expressed in high versus low nutrition individuals, the number of
 differentially expressed genes varied predictably according to a trait’s
 degree of condition dependence (head horn &gt; thorax horn &gt;
 wings &gt; genitalia). Finally, we observed a high degree of
 similarity in direction of effects (vectors) for subsets of differentially
 expressed genes across both sexually dimorphic and nutritionally
 responsive growth. Our results are consistent with a common set of
 mechanisms governing sexual size dimorphism and condition dependence.
description: T dichotomus
 transcriptome assembliesThis archive contains
 four different transcriptome assemblies. The "full" assembly was
 not reduced after annotation, and the other three (dm, tc, and combine)
 were reduced after annotation with BLAST through the program TransPS. They
 were annotated against Drosophila melanogaster, Tribolium castaneum, and a
 combination of both organisms, respectively.T_dichotomus_transcriptome_assemblies.zipT dichotomus read count dataThis archive contains four different read count data sets, corresponding to the four different transcriptomes produced in this study.. The "full" data set was not reduced after annotation, and the other three (dm, tc, and combine) were reduced after annotation with BLAST through the program TransPS. They were annotated against Drosophila melanogaster, Tribolium castaneum, and a combination of both organisms, respectively. Also included is the design matrix used in calculation of differential expression through DESeq2.T_dichotomus_read_count_data.zipT_dichotomus_analysis_scriptsThis archive contains R scripts used in the study to infer differential expression. There are four scripts, each used for each of the four transcriptomes analyzed.
DOI: 10.5281/zenodo.17761703
title: INRIM_Brand1_60F_2_23C_0k_EDLC_single

description: MetSuperCap Project Dataset 60F SC sample 2 INRIM   - EDLC Single - Brand1

Part of the Constant Temperature DataBase
DOI: 10.5281/zenodo.17761702
title: INRIM_Brand1_60F_2_23C_0k_EDLC_single

description: MetSuperCap Project Dataset 60F SC sample 2 INRIM   - EDLC Single - Brand1

Part of the Constant Temperature DataBase
DOI: 10.5061/dryad.n88k968
title: Data from: Determinants of color polymorphism in the Eurasian scops owl Otus scops

description: Understanding the evolutionary forces maintaining avian color
 polymorphisms is a major challenge in evolutionary ecology. Aiming to give
 new insights into the functional basis of color polymorphism, we studied
 plumage color variation and its associations with fitness proxies in an
 individually marked population of scops owls (Otus scops) during 8 years.
 We found a repeatable method to assign individuals to three discrete
 morphs, using both photography and spectrophotometry. Individuals were
 either grey (33%), intermediate (37%) or brown (30%). Scops owl proved to
 be polymorphic as the three morphs were found in the two sexes and across
 ages. Frequency distribution of color within the population did not vary
 for the two sexes during the study period, and, within individuals, color
 was repeatable and not explained by plumage maturation. Females of the two
 extreme morphs seemed to mate at random while intermediate females seemed
 to mate assortatively. The color of females was not related to laying
 date, mean fledging mass or number of fledglings produced per nest.
 Finally, intermediate females survived slightly better than females of the
 other two morphs. Hence, pairing seems to favor intermediate males,
 because all females include intermediate males among their mates, and
 survival to intermediate females. Despite this, the proportion of
 intermediate individuals did not increase during the study period. This
 fact may allude to the importance, not analysed here, of larger scale
 temporal and/or spatial fluctuations in selection acting on different
 fitness-affecting factors, which may help to explain the maintenance of
 color polymorphism in the species.
description: Parejocase_DETERMINANTS_OF_COLOR_POLYMORPHISM_IN_THE_EURASIAN_SCOPS_OWL_OTUS_SCOPS.xlsData set for Parejo et al. 2018
DOI: 10.5061/dryad.kv27n5g
title: Data from: Expression of additive genetic variance for fitness in a population of partridge pea in two field sites

description: Despite the importance of adaptation in shaping biological diversity over
 many generations, little is known about populations’ capacities to adapt
 at any particular time. Theory predicts that a population's rate of
 ongoing adaptation is the ratio of its additive genetic variance for
 fitness, VA (W), to its mean absolute fitness, W̅. We conducted a
 transplant study to quantify W̅ and standing VA (W) for a population of
 the annual legume Chamaecrista fasciculata in one field site from which we
 initially sampled it and another site where it does not currently occur
 naturally. We also examined genotype‐by‐environment interactions, G x E,
 as well as its components, differences between sites in VA (W) and in rank
 of breeding values for fitness. The mean fitness indicated population
 persistence in both sites, and there was substantial VA (W) for ongoing
 adaptation at both sites. Statistically significant G x E indicated that
 the adaptive process would differ between sites. We found a positive
 correlation between fitness of genotypes in the “home” and “away”
 environments, and G x E was more pronounced as the life cycle proceeds.
 This study exemplifies an approach to assessing whether there is
 sufficient VA (W) to support evolutionary rescue in populations that are
 declining.
description: Flint Hills fitness
 dataFitness data collected
 in 2015 for Chamaecrista fasciculata at Flint Hills. Please see README
 file for details.FH_2015_census_data_revised.csvGrey Cloud fitness dataFitness data collected in 2015 for Chamaecrista fasciculata at Grey Cloud. Please see README file for details.GC_2015_census_data_revised.csvFlint Hills herbivory dataHerbivory data collected in 2015 for Chamaecrista fasciculata at Flint Hills. Column names are defined in README file for "FH_2015_census_data_revised.csv," except for "herbivory" column, which denotes the presence (1) or absence (0) of herbivory during any census.FH_2015_herbivory_20180112.csvGrey Cloud herbivory dataHerbivory data collected in 2015 for Chamaecrista fasciculata at Grey Cloud. Column names are defined in README file for "GC_2015_census_data_revised.csv," except for "herbivory" column, which denotes the presence (1) or absence (0) of herbivory during any census, and "herbiv.certainty" column, which denotes any instances where the presence of herbivory was uncertain.GC_2015_herbivory_20180112.csv