cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/104844
title: Anemometer data collected during research cruise CH1111 using a RM Young 05103 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7653119.v1
title: Biochemical Reconstitution of UV-induced Mutational Processes

description: This dataset is associated with the paper entitled "Biochemical Reconstitution of UV-induced Mutational Processes", which is published in Nucleic Acid Research in 2019.<br><br>"Fastq.zip" contains all fastaq raw data files that have been used in the paper. Each fastaq file name contains NGS ID (18G, 17E etc) and barcode # (BCxx). These identifications match with Table S2 of the paper, which summarizes experimental conditions. <br>"NGS Protocol 3.4.docx" is our laboratory protocol for basic analysis of our NGS data. This protocol is designed for new student to setup software and compute mutation frequency from fastaq data. Protocol uses three Excel template files with macro, which are also included in this dataset. The protocol and macros are designed for the specific data analysis, not for general use. Macro works only for specific template sequences used in the paper.<br>
DOI: 10.7284/104845
title: Anemometer data collected during research cruise CH1111 using a RM Young 05103 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104843
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise CH1111 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7651916
title: Data for PNAS paper titled: Role of UCHL1 in axonal injury and functional recovery after cerebral ischemia

description: Data associated with Figures.
DOI: 10.7284/104838
title: Fluorometer data collected during research cruise CH1111 using a Turner 10-AU instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104846
title: GNSS (Global Navigation Satellite System) data collected during research cruise CH1111 using a Northstar 952X instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7651916.v1
title: Data for PNAS paper titled: Role of UCHL1 in axonal injury and functional recovery after cerebral ischemia

description: Data associated with Figures.
DOI: 10.6084/m9.figshare.7651916.v2
title: Data for PNAS paper titled: Role of UCHL1 in axonal injury and functional recovery after cerebral ischemia

description: Data associated with Figures.
DOI: 10.6084/m9.figshare.7650155
title: Primary data. Thiotrophic bacterial symbiont induces polyphenism in giant ciliate host Zoothamnium niveum

description: Here we study host dependence in the marine, giant colonial ciliate <i>Zoothamnium niveum</i> and its thiotrophic symbiont from an instable environment of degrading wood. We combine several experimental approaches to provide evidence for a sulphide-tolerant host with striking polyphenism involving two discrete morphs, a symbiotic and an aposymbiotic one. The two differ significantly in colony growth form and fitness. We provide evidence that the aposymbiotic morph is present in nature.Comprehensive report generated with RMarkdown, code provided in Rmd file. It can be visualized as pdf or as html. CSV files with raw data included. MD5 signatures provided in a txt file.<br><sub>MD5(zip file)= 75dfe8d5f14e98c205f26900db68fe08</sub><br><br>
DOI: 10.7284/104842
title: Gyrocompass data collected during research cruise CH1111 using a Sperry MK-37 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7651916.v3
title: Data for PNAS paper titled: Role of UCHL1 in axonal injury and functional recovery after cerebral ischemia

description: Data associated with Figures.
DOI: 10.7284/104839
title: Meteorological Station data collected during research cruise CH1111 using a RM Young 26700 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7651916.v4
title: Data for PNAS paper titled: Role of UCHL1 in axonal injury and functional recovery after cerebral ischemia

description: Data associated with Figures.
DOI: 10.6084/m9.figshare.7650143
title: 2017 Maple Soil chemistry.xlsx

description: Soil chemical analyses of the soil around 80 maple seedlings analyzed in study.
DOI: 10.7284/104837
title: Singlebeam Echosounder data collected during research cruise CH1111 using a Knudsen 3260 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7650143.v1
title: 2017 Maple Soil chemistry.xlsx

description: Soil chemical analyses of the soil around 80 maple seedlings analyzed in study.
DOI: 10.6084/m9.figshare.7650155.v3
title: Primary data. Thiotrophic bacterial symbiont induces polyphenism in giant ciliate host Zoothamnium niveum

description: Here we study host dependence in the marine, giant colonial ciliate <i>Zoothamnium niveum</i> and its thiotrophic symbiont from an instable environment of degrading wood. We combine several experimental approaches to provide evidence for a sulphide-tolerant host with striking polyphenism involving two discrete morphs, a symbiotic and an aposymbiotic one. The two differ significantly in colony growth form and fitness. We provide evidence that the aposymbiotic morph is present in nature.Comprehensive report generated with RMarkdown, code provided in Rmd file. It can be visualized as pdf or as html. CSV files with raw data included. MD5 signatures provided in a txt file.<br><sub>MD5(zip file)= 75dfe8d5f14e98c205f26900db68fe08</sub><br><br>
DOI: 10.6084/m9.figshare.7650137
title: 2017 MYCORRHIZAEseqs.fna

description: Partial 18S arbuscular mycorrhizal sequence data (primers WANDA and AML2) from the roots of maple seedlings. Sequences are in the fasta format, have been adapter-trimmed, and assembled.
DOI: 10.6084/m9.figshare.7650155.v2
title: Primary data. Thiotrophic bacterial symbiont induces polyphenism in giant ciliate host Zoothamnium niveum

description: Here we study host dependence in the marine, giant colonial ciliate <i>Zoothamnium niveum</i> and its thiotrophic symbiont from an instable environment of degrading wood. We combine several experimental approaches to provide evidence for a sulphide-tolerant host with striking polyphenism involving two discrete morphs, a symbiotic and an aposymbiotic one. The two differ significantly in colony growth form and fitness. We provide evidence that the aposymbiotic morph is present in nature.Comprehensive report generated with RMarkdown, code provided in Rmd file. It can be visualized as pdf or as html. CSV files with raw data included. MD5 signatures provided in a txt file.<br><sub>MD5(zip file)= 1df26138323dd8c23c0175cea25a4f5f</sub><br><br>
DOI: 10.6084/m9.figshare.7651916.v5
title: Data for PNAS paper titled: Role of UCHL1 in axonal injury and functional recovery after cerebral ischemia

description: Data associated with Figures.
DOI: 10.7284/104841
title: Singlebeam Echosounder data collected during research cruise CH1111 using a Furuno FCV-292 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7650104
title: 2017 BACTERIAseqs.fna

description: Bacterial 16S sequence data (primers 799F and 1115R) from the roots of maple seedlings. Sequences are in the fasta format, have been adapter-trimmed, and assembled. <br>
DOI: 10.6084/m9.figshare.7650131
title: low resolution wind tunnel

description: low resolution wind tunnel
DOI: 10.7284/104840
title: Speedlog data collected during research cruise CH1111 using a Furuno DS-80 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7650134
title: 2017 FUNGIseqs.fna

description: Fungal ITS sequence data (primers ITS1F and ITS2) from the roots of maple seedlings. Sequences are in the fasta format, have been adapter-trimmed, and assembled.
DOI: 10.6084/m9.figshare.7651916.v6
title: Data for PNAS paper titled: Role of UCHL1 in axonal injury and functional recovery after cerebral ischemia

description: Data associated with Figures.
DOI: 10.6084/m9.figshare.7650134.v1
title: 2017 FUNGIseqs.fna

description: Fungal ITS sequence data (primers ITS1F and ITS2) from the roots of maple seedlings. Sequences are in the fasta format, have been adapter-trimmed, and assembled.
DOI: 10.7284/102995
title: Anemometer data collected during research cruise CH1210 using a RM Young 05103 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7650095
title: 2017-MYCORRHIZAEmetadata.txt

description: Maple Mycorrhizae Metadata
DOI: 10.7284/102996
title: Anemometer data collected during research cruise CH1210 using a RM Young 05103 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7650074
title: 2017-BACTERIAmetadata.txt

description: Maple Bacteria Metadata
DOI: 10.6084/m9.figshare.7650080
title: 2017-FUNGImetadata.txt

description: Maple Fungi Metadata
DOI: 10.6084/m9.figshare.7651916.v7
title: Data for PNAS paper titled: Role of UCHL1 in axonal injury and functional recovery after cerebral ischemia

description: Data associated with Figures.
DOI: 10.6084/m9.figshare.7650074.v2
title: 2017-BACTERIAmetadata.txt

description: Maple Bacteria Metadata
DOI: 10.7284/102468
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise CH1210 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7650074.v1
title: 2017-BACTERIAmetadata.txt

description: Maple Bacteria Metadata
DOI: 10.7284/102546
title: Fluorometer data collected during research cruise CH1210 using a Turner 10-AU instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7651916.v9
title: Data for PNAS paper titled: Role of UCHL1 in axonal injury and functional recovery after cerebral ischemia

description: Data associated with Figures.
DOI: 10.7284/102856
title: GNSS (Global Navigation Satellite System) data collected during research cruise CH1210 using a Northstar 952X instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102798
title: Meteorological Station data collected during research cruise CH1210 using a RM Young 26700 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102130
title: Singlebeam Echosounder data collected during research cruise CH1210 using a Knudsen 3260 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7651916.v12
title: Data for PNAS paper titled: Role of UCHL1 in axonal injury and functional recovery after cerebral ischemia

description: Data associated with Figures.
DOI: 10.7284/102551
title: Singlebeam Echosounder data collected during research cruise CH1210 using a Furuno FCV-292 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102550
title: Speedlog data collected during research cruise CH1210 using a Furuno DS-80 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7651916.v13
title: Data for PNAS paper titled: Role of UCHL1 in axonal injury and functional recovery after cerebral ischemia

description: Data associated with Figures.
DOI: 10.7284/102547
title: Winch data collected during research cruise CH1210 using a Markey DUSH-5 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7651916.v14
title: Data for PNAS paper titled: Role of UCHL1 in axonal injury and functional recovery after cerebral ischemia

description: Data associated with Figures.
DOI: 10.7284/104853
title: Anemometer data collected during research cruise CH1211 using a RM Young 05103 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7651916.v15
title: Data for PNAS paper titled: Role of UCHL1 in axonal injury and functional recovery after cerebral ischemia

description: Data associated with Figures.
DOI: 10.7284/104854
title: Anemometer data collected during research cruise CH1211 using a RM Young 05103 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7651916.v16
title: Data for PNAS paper titled: Role of UCHL1 in axonal injury and functional recovery after cerebral ischemia

description: Data associated with Figures.
DOI: 10.7284/104848
title: Fluorometer data collected during research cruise CH1211 using a Turner 10-AU instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104855
title: GNSS (Global Navigation Satellite System) data collected during research cruise CH1211 using a Northstar 952X instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7649855
title: DHS

description: DNAse hypersensitive sites
DOI: 10.6084/m9.figshare.7649855.v1
title: DHS

description: DNAse hypersensitive sites
DOI: 10.7284/104852
title: Gyrocompass data collected during research cruise CH1211 using a Sperry MK-37 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104849
title: Meteorological Station data collected during research cruise CH1211 using a RM Young 26700 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104847
title: Singlebeam Echosounder data collected during research cruise CH1211 using a Knudsen 3260 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7649789
title: mid simulation run

description: mid simulation run
DOI: 10.6084/m9.figshare.7649792
title: Statistical data for Deprivation of root-derived resources affects soil microbial biomass but not community structure in litter and soil

description: Microbial biomass data analysed by substrate-induced respiration and phospholipid fatty acid (PLFA) data after one and three years after root trenching in deciduous forests.<br>
DOI: 10.6084/m9.figshare.7649789.v1
title: mid simulation run

description: mid simulation run
DOI: 10.6084/m9.figshare.7649792.v1
title: Statistical data for Deprivation of root-derived resources affects soil microbial biomass but not community structure in litter and soil

description: Microbial biomass data analysed by substrate-induced respiration and phospholipid fatty acid (PLFA) data after one and three years after root trenching in deciduous forests.<br>
DOI: 10.7284/104851
title: Singlebeam Echosounder data collected during research cruise CH1211 using a Furuno FCV-292 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104850
title: Speedlog data collected during research cruise CH1211 using a Furuno DS-80 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7649741
title: Scripts for DNAseI seq analysis

description: Scripts for processing DNAseI seq data
DOI: 10.6084/m9.figshare.7649744
title: Captive and free-ranging white-tailed deer concentrations of imidacloprid

description: Data were collected on white-tailed deer exposed to imidacloprid in captive trials.
DOI: 10.6084/m9.figshare.7649705
title: CaptiveDeerData.Imidacloprid.Fawn.Final.xlsx

description: Data collected on fawn, white-tailed deer during trials to evaluate in effects of exposure to imidacloprid
DOI: 10.6084/m9.figshare.7649744.v1
title: Captive and free-ranging white-tailed deer concentrations of imidacloprid

description: Data were collected on white-tailed deer exposed to imidacloprid in captive trials.
DOI: 10.7284/118400
title: Multibeam Echosounder data collected during research cruise COOK02MV using a SeaBeam SB2000 instrument system onboard the platform RV Melville
DOI: 10.6084/m9.figshare.7649648
title: Supplemental Figures

description: Supplemental Figures
DOI: 10.6084/m9.figshare.7649657
title: Supplemental Tables

description: Supplemental Tables
DOI: 10.6084/m9.figshare.7649705.v1
title: CaptiveDeerData.Imidacloprid.Fawn.Final.xlsx

description: Data collected on fawn, white-tailed deer during trials to evaluate in effects of exposure to imidacloprid
DOI: 10.6084/m9.figshare.7649642
title: FIMO_Output

description: Output from running FIMO on Digital Genomic Footprints
DOI: 10.6084/m9.figshare.7649657.v1
title: Supplemental Tables

description: Supplemental Tables
DOI: 10.7284/118575
title: Multibeam Echosounder data collected during research cruise COOK23MV using a SeaBeam 2000 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7649639
title: Chromosome_size

description: Chromosome sizes for each species
DOI: 10.6084/m9.figshare.7649648.v2
title: Supplemental Figures

description: Supplemental Figures
DOI: 10.6084/m9.figshare.7649639.v1
title: Chromosome_size

description: Chromosome sizes for each species
DOI: 10.6084/m9.figshare.7649642.v1
title: FIMO_Output

description: Output from running FIMO on Digital Genomic Footprints
DOI: 10.6084/m9.figshare.7649648.v1
title: Supplemental Figures

description: Supplemental Figures
DOI: 10.6084/m9.figshare.7649621
title: Plantilla de revisión de herramientas

description: Plantilla usada para describir herramientas candidatas a usar en un vocabulario semántico
DOI: 10.6084/m9.figshare.7649624
title: Figure dataset for Dengler Haunreiter et al. Nature Communication 2019

description: Data behind the paper plots (main and supplemetary).<br>
DOI: 10.7284/118576
title: Multibeam Echosounder data collected during research cruise COOK23MV using a SeaBeam 2000 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7649621.v1
title: Plantilla de revisión de herramientas

description: Plantilla usada para describir herramientas candidatas a usar en un vocabulario semántico
DOI: 10.7284/118594
title: Multibeam Echosounder data collected during research cruise COOK25MV using a SeaBeam 2000 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7649624.v1
title: Figure dataset for Dengler Haunreiter et al. Nature Communication 2019

description: Data behind the paper plots (main and supplemetary).<br>
DOI: 10.7284/118595
title: Multibeam Echosounder data collected during research cruise COOK25MV using a SeaBeam 2000 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115381
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN447 using a Northstar 952 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119353
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN447 using a Northstar 952 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115384
title: Speedlog data collected during research cruise EN447 using a EDO MRQ-4015D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107225
title: Multiplexed data collected during research cruise EN472 using a Hawaii UHDAS instrument system onboard the platform RV Endeavor
DOI: 10.7284/103237
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN472 using a Northstar 952 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107301
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN472 using a Furuno GP-90D instrument system onboard the platform RV Endeavor
DOI: 10.7284/111986
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN472 using a Trimble NT-300D instrument system onboard the platform RV Endeavor
DOI: 10.7284/108608
title: Speedlog data collected during research cruise EN472 using a EDO MRQ-4015D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7649495
title: Scripts and data for DNAseI cutting bias correction

description: Scripts for correction for DNAse I cutting bias using MixtureModel.r package. The folder includes seqBias files for <i>S. bicolor</i>, <i>S. italica, Z. mays</i> and <i>B. distachyon </i>
DOI: 10.7284/107251
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise EN473 using a Hawaii UHDAS instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7649495.v1
title: Scripts and data for DNAseI cutting bias correction

description: Scripts for correction for DNAse I cutting bias using MixtureModel.r package. The folder includes seqBias files for <i>S. bicolor</i>, <i>S. italica, Z. mays</i> and <i>B. distachyon </i>
DOI: 10.6084/m9.figshare.7649483
title: DGFs_after_filtering

description: Digital Genomic Footprints after DNAseI cutting bias correction
DOI: 10.6084/m9.figshare.7649486
title: Block-matrix-based approach for the hybrid vehicle routing problem with fuzzy travel time and transportation type selection

description: In this study, we propose a novel hybrid model for the vehicle routing problem that combines fuzzy travel time and transportation type selection between milk-run and cross-dock strategies to derive an optimal transportation plan. Furthermore, we present a novel block-matrix-based approach for the hybrid model to explore optimal transportation plans in an intuitive, reasonable, effective, and efficient form. The proposed block-matrix-based approach derives an optimal transportation plan by solving a hybrid vehicle routing problem that considers not only fuzzy travel time, but also transportation type selection between milk-run and cross-dock strategies. An extended biogeography-based optimization (BBO) algorithm is proposed to effectively derive a transportation plan with the optimal degree of plant satisfaction by extending the operators of migration and mutation, and introducing a novel self-adaptive mutation rate, as well as a secondary mutation operator.