cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/8twndrk68y
title: Data set of “Data-driven incentive mechanism design for chronic disease prevention from the perspective of government”

description: The selected patients are the 106 hypertensive patients who receive prevention and treatment services from the community hospital. Based on the survey of 106 hypertensive patients in the community hospital, the data of 13 indicators in four dimensions including personal basic information, disease information, treatment cost, and lifestyle guidance (prevention) were obtained.
DOI: 10.6084/m9.figshare.24550387.v1
title: Supplementary Material for: Selective COX-2 inhibitor is beneficial in suppressing chronic postoperative pain in esophageal cancer patients and may prolong patient survival

description: Introduction: Chronic postsurgical pain (CPSP) is a common complication after surgical procedures. Radical resection of esophageal cancer is a complex procedure, one of the most extensive and traumatic surgical procedures in oncological surgery, and the incidence of postoperative chronic pain is high, seriously affecting patients' postoperative recovery. Therefore, this study aims to investigate the incidence of CPSP in patients with esophageal cancer and to analyse the risk factors associated with its occurrence, in order to provide certain prevention and treatment ideas for clinical prevention and reduction of CPSP. Methods: Patients with radical esophageal cancer resection were selected as the study subjects, and the clinical data regarding to patients' preoperative comorbidities, ASA grading, surgical method, use of selective COX-2 inhibitor, postoperative analgesic pump use and patients' postoperative tumor recurrence time were collected. The differences in clinical data between the CPSP group and no CPSP group were compared to analyse the risk factors for the occurrence of CPSP. Results: A total of 262 patients were included, 57 (21.76%) developed CPSP, and there were statistical differences between the two groups in terms of selective COX-2 inhibitor and postoperative analgesic pump use rates and surgical modality (p&lt;0.05), and logistic regression analysis showed that age and length of surgery increased the risk of CPSP, perioperative selective COX-2 inhibitor use decreased the the risk of CPSP occurrence (p&lt;0.05), the extent of tumor infiltration and regional lymph node metastasis were risk factors for shortening tumor-free survival (TFS), and age and use of selective COX-2 inhibitor were influential factors for prolonging TFS (p&lt;0.05). Conclusion: Patients with esophageal cancer have a high incidence of postoperative chronic pain, with youth and length of surgery being risk factors for CPSP, and perioperative pain management with selective COX-2 inhibitor can reduce the incidence of CPSP and is associated with prolonged tumor-free survival.
DOI: 10.6084/m9.figshare.3562218.v1
title: Appendix A. Results from neighborhood analyses considering the effects of the density and frequency of neighbors on Solanum carolinense damage at three spatial scales.

description: Results from neighborhood analyses considering the effects of the density and frequency of neighbors on Solanum carolinense damage at three spatial scales.
DOI: 10.6084/m9.figshare.9887609.v1
title: XLEAP XTCAV phase space measurements

description: Calibrated XLEAP electron beam longitudinal phase space measured with the LCLS X-band deflecting cavity and energy spectrometer at the dump after all undulators<br><br>amolu0017_run_46_xtcav_dataset.npz - XLEAP wiggler out and XLEAP chicane off used in Figure 1e<br>amolu0017_run_47_xtcav_dataset.npz - XLEAP wiggler in and XLEAP chicane off used in Figure 1d<br>amolu0017_run_48_xtcav_dataset.npz - XLEAP wiggler in and XLEAP chicane on used in Figure 1b,c<br><br>plot_saved_xtcav.py - example of how to read and plot the XTCAV datasets above<br>xtcav_get_und_entrance.py - dependency of plot_saved_xtcav.py used to "dewake" the phase space in order to estimate the phase space at the entrance to the LCLS undulator line
DOI: 10.15482/usda.adc/1519177
title: Soybean Aphids per Plant Among Soybean Lines Containing Various Rag Genes
DOI: 10.17632/cffb8r77vh
title: FLOSS4ITGOV

description: An initial assessment of FLOSS for IT governance based on COBIT 2019.
DOI: 10.17632/tgprd2g4t9
title: DOES POLYCYSTIC OVARY SYNDROME IMPACT THE MORPHOKINETICS OF BLASTOCYST DEVELOPMENT? A TIME–LAPSE–BASED ANALYSIS

description: 297 zygotes from PCOS patients and 259 zygotes from non-PCOS patients without PCOS were observed and followed up. Embryos from the PCOS patient group had statistically significant differences in t9, tSB, tEB, and tBSC versus embryos from the control group (69.68 hpi, 108.53 hpi, 110.27 hpi, 111.87 hpi, and 8.53 hrs versus 72.47 hpi, 105.43 hpi, 107.08 hpi, 108.77 hpi, and 7.2 hrs, respectively). The waist circumference ≥ 80 cm in the PCOS group significantly influenced the morphokinetics of the embryo after compaction, with shorter events tM, tSC, and tSB, but longer intervals tBSC, tESC, and tHSC, compared to the non-PCOS group
DOI: 10.6084/m9.figshare.24408217.v2
title: Binder-type effect on the physico-mechanical, combustion and emission properties of <i>Alstonia boonei</i> De Wild. sawdust and <i>Theobroma cacao</i> L. pod biochar briquettes for energy applications.

description: The research investigated physical, mechanical, combustion, and gas emission analysis of biochar briquettes produced from Alstonia boonei sawdust and Theobroma cacao pod with different binders. All analyses were done per standard methods, and scientific research references. For each property investigated, data for each replication is presented. The means and standard errors were calculated with these values using Microsoft Excel. The Analysis of Variance for the treatments and post hoc analysis were also conducted to determine significant differences between the various levels at a confidence level of 95%.
DOI: 10.25378/janelia.7739750.v4
title: Eight-probe Neuropixels recordings during spontaneous behaviors

description: Eight-probe Neuropixels recordings in three mice of spontaneous activity. <br>Each "spks" is a structure of length 8, where each entry is a different probe (these probes were recorded simultaneously). It contains the spike times and the cluster identity of each spike.load(fullfile(ephysroot, sprintf('spks%s_Feb18.mat' , mouse_name)));spks(k).st = spike times (in seconds)<br>spks(k).clu = cluster identity of each spike in st (which neuron does spike belong to)spks(k).Wheights = height of each cluster on the probe<br>Information about each probe's location is in "probeLocations.mat". The location of each site on the probe in microns in the Allen CCF framework is given in "ccfCoords". The brain area for each site is in "borders" as a function of the height of the site. To view the probe inside a wire-mesh brain, download and add to your path this toolbox: https://github.com/cortex-lab/allenCCF . You will also need to add to your path the npy-matlab toolbox: https://github.com/kwikteam/npy-matlab . <br>The behavioral file is the processed version of a mouse face movie (time x pixels x pixels). For raw videos, see this:<br>https://figshare.com/articles/Behavioral_videos_for_8-Neuropixels_recordings_from_Stringer_et_al_2019_Science/8378360<br>We processed these by taking the singular value decomposition of it.beh = load(fullfile(ephysroot, sprintf('%s_face_proc.mat', mouse_name)));beh.motionSVD = timepoints x components (left singular vectors * singular values)beh.motionMask = pixels x pixels x components (right singular vectors)beh.times = times of behavioral frames (in seconds) in same timeframe as spikes<br>See the "ephysLoad.m" script for how to load each into matlab and better understand the structures.
DOI: 10.6084/m9.figshare.12489518.v1
title: ProjecTILs murine reference atlas of virus-specific CD8 T cells, version 1

description: We have developed ProjecTILs, a computational approach to project new data sets into a reference map of T cells, enabling their direct comparison in a stable, annotated system of coordinates. Because new cells are embedded in the same space of the reference, ProjecTILs enables the classification of query cells into annotated, discrete states, but also over a continuous space of intermediate states. By comparing multiple samples over the same map, and across alternative embeddings, the method allows exploring the effect of cellular perturbations (e.g. as the result of therapy or genetic engineering) and identifying genetic programs significantly altered in the query compared to a control set or to the reference map.<br>We illustrate the projection of several data sets from recent publications over two cross-study murine T cell reference atlases: the first describing tumor-infiltrating T lymphocytes (TILs), the second characterizing acute and chronic viral infection.<br>Single-cell data to build the virus-specific CD8 T cell reference map were downloaded from GEO under the following entries: GSE131535, GSE134139 and GSE119943, selecting only samples in wild type conditions. Data for the Ptpn2-KO, Tox-KO and CD4-depletion projections were obtained from entries GSE134139, GSE119943, and GSE137007 and were not included in the construction of the reference map.<br>To construct the LCMV reference map, we split the dataset into five batches that displayed strong batch effects, and applied STACAS (https://github.com/carmonalab/STACAS) to mitigate its confounding effects. We computed 800 variable genes per batch, excluding cell cycling genes, ribosomal and mitochondrial genes, and computed pairwise anchors using 200 integration genes, and otherwise default STACAS parameters. Anchors were filtered at the default threshold 0.8 percentile, and integration was performed with the IntegrateData Seurat3 function with the guide tree suggested by STACAS.<br>Next, we performed unsupervised clustering of the integrated cell embeddings using the Shared Nearest Neighbor (SNN) clustering method implemented in Seurat 3 with parameters {resolution=0.4, reduction=”pca”, k.param=20}. We then manually annotated individual clusters (merging clusters when necessary) based on several criteria: i) average expression of key marker genes in individual clusters; ii) gradients of gene expression over the UMAP representation of the reference map; iii) gene-set enrichment analysis to determine over- and under- expressed genes per cluster using MAST. In order to have access to predictive methods for UMAP, we recomputed PCA and UMAP embeddings independently of Seurat3 using respectively the prcomp function from basic R package “stats”, and the “umap” R package (https://github.com/tkonopka/umap).<br>
DOI: 10.6084/m9.figshare.15190011.v7
title: Processing L2 Russian verbal morphology: The effect of language immersion on priming patterns

description: These datasets include reaction times from a masked priming study. The goal of the study is to study processing of Russian verbal morphology in L1 and L2 participants. There were 80 participants in total, 57 second language learners and 23 Russian native speakers. <br>
DOI: 10.6084/m9.figshare.154688.v5
title: Gas hydrate deposits: a primer

description: THE .pdf ISN'T DISPLAYING ON FIGSHARE'S PREVIEW FOR REASONS UNKNOWN. TRYING TO FIX... This graphic is a draft from an educational course I'm compiling about the Earth's natural gas reserves. It attempts to summarise what gas hydrates are and where they can be found, adn accompanies further graphics that explain the chemistry of hydrates. No attempt is made to quantify the amount of methane that might be present in these deposits globally - this is the subject of much uncertainty. Those interested in the details of resource size can refer to the sources listed in the graphic and GEA (2012). <em>Global Energy Assessment - Toward a Sustainable Future</em>. Cambridge University Press. I hope some will find this useful. Any comments, corrections and queries welcome.
DOI: 10.6084/m9.figshare.5104606.v1
title: Supplementary Material for: Sequencing and genomic annotation of the chicken <i>(Gallus gallus)</i> Hox clusters, and mapping of evolutionarily conserved regions

description: Hox genes encode transcription factors that are involved in the regulation of normal development and are mutated in some diseases and malformations. Chicken <i>HOX</i> genes have been extensively studied in the chick limb and other developmental models. To date while the chicken <i>HOXA </i>cluster has been completely sequenced many other chicken <i>HOX</i> genes are known only from partial mRNAs or unfinished genome assemblies. Furthermore, although a finished sequence of the <i>HOXA</i> cluster is available, the sequence has not yet been annotated. We have therefore manually annotated the available <i>HOX</i> sequences and improved the sequences by sequencing PCR fragments that bridge existing gaps in the genome sequences. These sequences complement the published sequences, including the currently incomplete WashUC Gallus_gallus-2.1 build, to give an improved coverage of the cluster. We used phylogenetic footprinting to map the genomic location of 398 Ultra Conserved Regions in the<i> HOX</i> complex 248 of which do not overlap with any known annotated coding exon. These included the hox-related microRNAs miR-10 and miR-196. The chicken <i>HOX</i> clusters appear to be broadly comparable to their human counterparts. A few human orthologues were not recovered from the chicken, presumably because of incomplete sequence.
DOI: 10.6084/m9.figshare.7010474.v5
title: Replication Package

description: Thank you for coming to our replication package page! In the zip folder, we include documents, scripts, and data to replicate our study.
DOI: 10.17632/mm6dm8jxcs
title: Association between inflammatory bowel disease and rosacea: A bidirectional two-sample Mendelian randomization study.

description: Supplementary table
DOI: 10.6084/m9.figshare.12821786.v3
title: List of Selected Articles

description: This dataset contain (1) List of articles resulted from the original search (2) List of articles selected for full text review (3) List of selected articles with key data extracted (4) summary of quality scores (5) quality assessment checklist
DOI: 10.6084/m9.figshare.26028772.v1
title: Source_data_fig_4_a_b

description: Fig. 4 illustrates the total active and reactive power output profiles of the WF. The active power supply-demand curve was divided into three periods, as shown in Fig. 4a, i.e., constant control (t = 0–100 s), load shedding control (t = 100–250 s), and maximum power point tracking (MPPT) control (t = 250–500 s). The reactive power demand curve was also divided into three periods according to power commands, as shown in Fig. 4b. It can be found from Fig. 4 that the proposed decentralized dynamic control system can respond to the grid power demand with small errors only through local measurements, even under time-varying operating conditions.
DOI: 10.6084/m9.figshare.28455110.v1
title: <b>Respondents opinion about tobacco control strategies and their implementation in Malaysia: a qualitative study</b>

description: The transcripts of the interviews conducted with the respondents to assess public opinions and perspectives on implementing tobacco control measures in Malaysia are shown.
DOI: 10.6084/m9.figshare.28691885.v1
title: <b>A comprehensive dataset of therapeutic peptides on multi-function property and structure information</b>

description: This is a comprehensive dataset containing 62,048 experimentally validated therapeutic peptides annotated with structural information. The peptides are classified into 47 categories based on their functional or therapeutic properties, of which 22,898 are multifunctional peptides.
DOI: 10.17632/j9gmgb9txx
title: Exploring the predictors of physical inactivity in a university setting

description: The aim of this study was to gain knowledge about the predictors of physical inactivity amongst inactive university administrative staff and PhD students, using the Theoretical Domains Framework (TDF) to guide the exploration. It was hypothesised that the predictors of physical inactivity will differ between administrative staff and PhD students. The Global Physical Activity Questionnaire (GPAQ) was used to assess the physical activity levels of the university administrative staff and students, with those scoring below 600 MET/minutes of total moderate physical activity regarded as physically inactive and were thus included in this study. The findings of this study indicated that 64% of university administrative staff and 62% of PhD students who responded to the survey were physically inactive (i.e., scored below 600 MET/minutes of total moderate physical activity).

 Furthermore, the 14 domains of the Theoretical Domains Framework (TDF) were measured using the Determinants of Physical Activity Questionnaire (DPAQ) and multiple regression analyses were used to identify the domains of the TDF that predict physical inactivity among university administrative staff and PhD students. The findings suggested that the physical skills domain of the TDF was the main predictor of physical inactivity among university administrative staff, while the knowledge and intentions domains were the main predictors of physical inactivity among university PhD students.
DOI: 10.6084/m9.figshare.14935662.v2
title: Data output files: Birds can transition between stable and unstable states via wing morphing

description: This dataset contains all of the files output from AvInertia that are required to process the results.
DOI: 10.6084/m9.figshare.25506295.v1
title: Datasets with SMILES and Mordred descriptors.

description: The CEP (Clean Energy Project) dataset includes the candidate molecules that are suitable for solar cell materials. The power conversion efficiency (PEC) dataset has 29,978 compounds, and corresponding CEP values and Mordred descriptors. <b>data source</b>: Hachmann, J., Olivares-Amaya, R., Atahan-Evrenk, S., Amador-Bedolla, C., S ́anchez-Carrera, R.S., Gold-Parker, A., Vogt, L., Brockway, A.M., Aspuru-Guzik, A.: The harvard clean energy project: large-scale computational screening and design of organic photovoltaics on the world community grid. The Journal of Physical Chemistry Letters 2(17), 2241–2251 (2011)The Malaria dataset includes the experimentally measured half-maximal effective concentration (EC50) values of a sulfide-resistant strain of Plasmodium falciparum, which is the source of malaria. The Malaria dataset has 9,998 compounds and their EC50 values and Mordred descriptors. <b>data source</b>: Gamo, F.-J., Sanz, L.M., Vidal, J., Cozar, C., Alvarez, E., Lavandera, J.-L., Vanderwall, D.E., Green, D.V.S., Kumar, V., Hasan, S., Brown, J.R., Peishoff, C.E., Cardon, L.R., Garcia-Bustos, J.F.: Thousands of chemical starting points for anti-malarial lead identification. Nature 465(7296), 305–310 (2010 The Lipophilicity dataset contains an octanol/water distribution coefficient at pH 7.4 measured experimentally. The dataset has 4200 compounds and their corresponding values and Mordred descriptors. <b>data source</b>: Wen, N., Liu, G., Zhang, J., Zhang, R., Fu, Y., Han, X.: A fingerprints based molecular property prediction method using the bert model. Journal of Cheminformatics 14(1), 71 (2022) https://doi.org/10.1186/s13321-022-00650-3 9Log P - Small commercial molecules with octanol/water values. 250k molecules and smiles <br>
DOI: 10.17632/3kndp5vs6b
title: Ar-DAD: Arabic Diversified Audio Dataset

description: This is the only available audio library covering this large number of reciters and verses in one harmonized structure that can be used by concerned researchers in different directions. The audio files are organized into two main datasets. Reciters are put into 37 folders created per chapter (78- 114), within each chapter, subfolders are created as per the verse number, within each verse folder, the audio clips are enumerated into 30 different reciters. The second subset includes only one folder of audio clips for imitators categorized by an anonymous ID. The data is shared as WAV format for the audio clips with maximum quality as recorded and disseminated over the internet, no enhancement of any kind is applied after scraping. In this version of the dataset (V3), a third data folder is added for the textual materials of all verses as plain text files; with and without vocalization\vowelization (تشكيل __ Tashkeel).
DOI: 10.6084/m9.figshare.29093081.v1
title: Comment Preprint - Seascape carbon accounting boundary.pdf

description: Author Preprint of COMMENT article "<b>How does your carbon flow? Adopting a seascape boundary for coastal habitats overcomes common challenges for blue carbon accounting</b>"<b>Abstract:</b> This commentary advocates for a shift from single-habitat to seascape-scale carbon accounting in coastal ecosystems. By recognizing the dynamic flow of organic carbon across interconnected habitats, a seascape approach better captures climate mitigation benefits. It addresses challenges in credit allocation, allochthonous carbon treatment, and ecosystem connectivity, offering a more holistic framework for blue carbon policy, restoration, and market mechanisms aligned with nature-based solutions and biodiversity objectives.
DOI: 10.6084/m9.figshare.7149134.v1
title: Supplementary File 3 - gene counts and metadata.tar.gz

description: <b>Gene counts, gene metadata, and sample metadata from 6 dengue patients and 4 healthy controls.</b>
DOI: 10.17632/nd4jvhtnms
title: Warming temperature and male Guppy courtship behavior: less sexy and paler

description: Data refering to the work "Warming temperature and male Guppy courtship behavior: less sexy and paler". 
Data contains information about color intensity, size, weight, spots, gonodossomatic and behavior tests of the fish used in the present work.
DOI: 10.17632/xx79fvbrrj
title: Database of stress intensity factor solutions_updated

description: Results of stress intensity factors for all of the crack shapes examined in the paper titled as “Weight function and stress intensity factors for external circumferential surface cracks with high aspect ratio in cylinders”
DOI: 10.6084/m9.figshare.16550013.v1
title: Collection of simulated medical exams

description: The compressed folder contains a collections of simulated medical exams in mp3 format and the corresponding text files.
DOI: 10.6084/m9.figshare.24716952.v2
title: LDSPEC_data_release_120223.sumstats

description: GWAS summary statistics of the 70 UK Biobank diseases/traits across 14,820,648 imputed SNPs.