cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/8fhg28p9p4
title: journal of Methodology of Social Sciences and Humanities ; No.66

description: The main objective of Methodology of Humanities and Social Sciences (MSSH) is to provide an intellectual platform for national and international researchers to discuss their most recent findings related to philosophical foundations and methodology of humanities and social sciences. By doing so, the Journal hopes to improve the status of the field in Iran and in the world and to find solutions to theoretical and practical problems the profession is faced with. Given the importance of the humanities and social sciences and the fundamental role of these sciences in the realization of a coherent and civilized intellectual system, investigating the philosophical and methodological foundations of these sciences and criticizing and evaluating them, as well as attempting to extract Islamic foundations and views in the field of humanities is of great importance. In this regard, the following objectives have been considered as a roadmap for MSSH. To serve this purpose, researchers are encouraged to submit their unpublished, original, full-length papers for potential publication in the journal. The journal is set to publish original articles on a wide range of issues including;

 Study of the relationship between philosophy, philosophy of social sciences and humanities, methodology and research method; 
 The role of philosophy and methodology of social sciences and humanities in the quantitative and qualitative improvement of the social sciences and humanities;
 Comparative study of philosophy and methodology of social sciences and humanities and natural sciences;
 Study of the evolution of philosophy and methodology of social sciences and humanities;
 Comparative examination of quantitative and qualitative research methods;
 Philosophical analysis of concepts used in the social sciences and humanities;
 The study of the philosophical and theological foundations of the production of religious and indigenous social sciences and humanities;
 Methodology of the production of religious and indigenous social sciences and humanities;
 Methodology of using religious texts in social sciences and humanities and social sciences;
 Methodology of Muslim scholars in social studies;
 The deficiencies of the social sciences and humanities in the field of goals, foundations, methods and achievements;
 Philosophical and methodological assessment of studies in the field of humanities and social sciences;
 Philosophical and methodological assessment of studies in the field of Islamic humanities and social sciences;
 Philosophical and methodological assessment of macro policies of the country in the scientific, economic, political, social and cultural fields

To let individual researchers and libraries have access to the most recent research findings in the field, the journal allows open-access to its articles.
DOI: 10.17632/dkt4yy3f7s
title: The possibility of using a Slide Dryer BIS-N 209-1 for the preparation of male genitalia of tribe Phycitini

description: We studied the possibility of using a Slide Dryer BIS-N 209-1 for the preparation of male genitalia of tribe Phycitini (Lepidoptera: Pyralidae). 31 males of Plodia interpunctella from a single sticky insert from pheromone trap were used. The male abdomens were separated and placed in a plastic Petri dish (of diameter 3.5 cm) with 2 ml of 10% KOH solution. The samples were prepared at a fixed temperature of 80 C and over various time intervals. Being prepared, the samples were placed in glycerol on a glass slide and covered with a coverslip. Images of the samples were made using Zeiss Axio Imager 2 (lighting settings were fixed) with Canon EOS 6D. The microscope was focused on various structures of the genitals. Two structures were selected for analysis: the cranial, the darkest part of the gnathos, and the lightest part of the tegumen. The samples were examined and imaged from the ventral side. The aedeagus was previously removed. The camera settings were fixed at ISO 100 and shutter speed of 1/200 s. A dark frame was shot with the same camera settings and the lighting was turned off. Then, the brightness of the light passing through the samples was analyzed based on these images. At first, we chose images in which the analyzed structures were as sharp as possible. The raw images were converted into linear monochrome 16-bit TIFF files with dark file subtraction using the open-source Dcraw software. The color channels were converted at a fixed color temperature, no debayering was performed. The resulting images were analyzed in the open-source ImageJ software. The images were downsampled by averaging the brightness values over the 4*4-pixel area (binning). Next, two areas of the image were selected: one on a background next to the sample, the other one on the structure under study. The most homogeneous areas of the image were selected for the analysis. The ImageJ program determined the average brightness for both areas in analog-to-digital converter counts (ADU). Further, the brightness of the structure under study was normalized to the background brightness, the obtained light transmittance of the structure was entered in Table 4. The dependences of the light transmittance of various structures on the time of treatment with KOH were plotted in Figure. The data were fitted with an exponential decay to the stationary value. The abdomens that stayed in the KOH for 5 minutes turned out to be completely unsuitable for research because the sclerotized structures were too rigid, and the soft tissues were not completely macerated. As a result, it was shown that the degree of transmittance of the genitals increases with time. This is best seen in the dark area of the gnathos. However, after 80 minutes in KOH, the genitals reach their maximum transmittance transparency.
DOI: 10.6084/m9.figshare.14872782.v2
title: 1000Research_Journal_An Empirical Study on the Impact of Virtual Learning on Multimedia University Student Performance_TaiHenToong.csv

description: The study involved data analyses using SPSS to analyse the survey data collected from undergraduate students in Multimedia University. The sampling technique applied for this study was convenient sampling technique. For data collection purpose, self-administered online surveys was applied in this study. A total of 210 diploma students responded to the online surveys. As for data analyses, the statistical technique applied in the context of this study was multiple regression analysis.
DOI: 10.6084/m9.figshare.20282001.v1
title: Data for the paper "Effects of caffeine on resting-state and auditory oddball EEG in habitual coffee drinkers"

description: This dataset includes data and information related to the paper entitled "Effects of caffeine on resting-state and auditory oddball EEG in habitual coffee drinkers". The MS Excel file holds the data used in the resting state analysis, while the other files are epoched oddball task data in EEGLAB format.
DOI: 10.6084/m9.figshare.5483839.v1
title: Supplementary Material for: Insulin Regimens to Treat Hyperglycemia in Hospitalized Patients on Nutritional Support: Systematic Review and Meta-Analyses

description: <i>Background:</i> The best insulin regimen to treat hyperglycemia in hospitalized patients on nutritional support (NS) is unclear. <i>Methods:</i> We searched electronic databases to identify cohort studies or randomized clinical trials in order to evaluate the efficacy of different insulin regimens used to treat hyperglycemia in hospitalized patients on NS on diverse outcomes: mean blood glucose (MBG), hypoglycemia, length of stay in hospital, and mortality. <i>Results:</i> Seventeen studies from a total of 5,030 were included. Enteral Group included 8 studies; 1,203 patients using rapid, glargine, NPH, or Premix insulin; MBG 108-225 mg/dL; hypoglycemia 0-13%. In indirect meta-analyses, NPH insulin ranked best for glucose control (MD 95% CI -2.50 mg/dL [2.65 to -2.35]). Parenteral Group included 4 studies; 228 patients using regular and glargine or NPH insulin; MBG 137-202 mg/dL; hypoglycemia 0-40%. In meta-analyses comparing regular insulin added to parenteral nutrition bag with glargine, MBG (MD 95% CI -3.78 mg/dL [-11.93 to 4.37]; <i>I</i>2 = 0%) or hypoglycemia frequency (RR 95% CI 1.37 [0.43-4.32]; <i>I</i>2 = 70.7%) did not differ. The description related to hospital length of stay and mortality was inconsistent between groups. <i>Conclusions:</i> The best insulin regimen to treat hyperglycemia in hospitalized patients on NS has not been established; best results using insulin regimens with NPH in enteral nutrition do not seem to be clinically relevant.
DOI: 10.17632/wkkttw7mgk
title: Annex to “On Type-D Fuzzy Cellular Automata-based  MapReduce model in Industry 4.0”

description: Simulation code to observe ECA dynamics at null-boundary with rule 102/153-version 1.0.
DOI: 10.6084/m9.figshare.13158398.v1
title: Role of visual context on speech intelligibility

description: This is an EEG data set. EEG was acquired while individuals watched <i>clear</i> and <i>blurred</i> videos of a speaker uttering <i>intact</i> or <i>vocoded</i> words and made judgments about what they heard (animate or inanimate objects). <br>TriggersTrials with triggers 71 72 intact-audio/clear-video.Trials with triggers 73 74 vocoded-audio/clear-video. <br>Trials with triggers 75 76 intact-audio/blurred-video.<br>Trials with triggers 77 78 vocoded-audio/blurred-video.Trigger 99 indicates sound onset<br>
DOI: 10.6084/m9.figshare.9633011.v1
title: Indication embeddings

description: This GZipped CSV file contains what are referred to in the paper as the indication embeddings for each ICD-9 code, generic prescription from REDBOOK, and HCPCS/CPT code.
DOI: 10.6084/m9.figshare.25406233.v1
title: Elsafty_RBCs_Slide_24

description: Each one of (Elsafty_RBCs_Slide_1-25) contains the field images/patches of a specific slide/patient. The names of the patches start with the respective slide/patient number, followed by the unique patch/field number. There is a total of 47,363 patches with 1076x535 pixels size from the 25 slides/patients, the counts of patches per slide/patient are as follows: 1690, 1709, 2697, 2400, 1905, 1803, 2964, 3049, 2464, 2080, 1894, 1852, 2590, 2263, 3328, 983, 1066, 935, 1131, 1237, 1874, 1393, 1277, 1199, and 1580.
DOI: 10.6084/m9.figshare.7392887.v1
title: Supplementary Material for: microRNA-29a-3p, Up-Regulated in Human Gastric Cells and Tissues with <b><i>H.Pylori</i></b> Infection, Promotes the Migration of GES-1 Cells via A20-Mediated EMT Pathway

description: <b><i>Background/Aims:</i></b> <i>Helicobacter pylori</i> (<i>H. pylori</i>) infection is closely related to human gastric mucosa-associated diseases. Several recent studies on miRNAs have expanded our insights on <i>H.pylori</i> pathogenesis. This study aimed to investigate the biological roles and underlying molecular mechanisms of miR-29a-3p in human gastric cells and tissues with <i>H.pylori</i> infection. <b><i>Methods:</i></b> miR-29a-3p expression was quantified by quantitative RT-PCR (qRT-PCR). A miR-29a-3p target gene was validated by bioinformatics analysis, western blotting and dual luciferase reporter gene assays. Western blotting and immunohistochemistry (IHC) assay were performed to detect the protein expression. Transwell assay was used to determine the cell migration ability. <b><i>Results:</i></b> MiR-29a-3p was up-regulated in <i>H.pylori</i>-positive gastric mucosa tissues and <i>H.pylori</i>-infected gastric cells. The up-regulation of miR-29a-3p was dose-dependent in BGC-823 and GES-1 cells infected with <i>H.pylori</i>. Using gain- and loss-of-function experiments <i>in vitro</i>, we demonstrated that miR-29a-3p promoted the migration of gastric epithelial cells. We further characterized A20 as a direct target of miR-29a-3p. The expression of A20 was decreased in <i>H.pylori</i>-positive gastric mucosa tissues compared with <i>H.pylori</i>-negative gastric mucosa tissues. A20 downregulation was time- and dose-dependent in GES-1 and BGC-823 cells infected with <i>H.pylori</i>. In GES-1 and BGC-823 cells infected with <i>H.pylori</i>, the miR-29a-3p mimic significantly blocked A20 expression, which suggests that <i>H.pylori</i> decreased A20 expression through up-regulating miR-29a-3p in GES-1 and BGC-823 cells infected with <i>H.pylori</i>. The knockdown of A20 by siRNA enhanced the migration of human gastric epithelial cells and promoted the expression of Snail, Vimentin, and N-cadherin and inhibited the expression of E-cadherin. <b><i>Conclusion:</i></b> The miR-29a-3p may act as a tumor promotive miRNA by regulating cells migration through directly targeting of A20 gene in human gastric epithelial cells infected with <i>H.pylori</i>.
DOI: 10.6084/m9.figshare.26558296.v1
title: Supplementary Material for: Prognostic and clinical significance of the proliferation marker MCM7 in breast cancer

description: Introduction: Minichromosome maintenance complex component 7 (MCM7) plays an essential role in proliferation and DNA replication of cancer cells. However, the expression and prognostic significance of MCM7 in breast cancer (BC) remain to be defined. In this study, we aimed to evaluate the role of MCM7 in BC.
Methods: We conducted immunohistochemistry staining of MCM7 in 1156 operable early-stage BC samples and assessed MCM7 at the transcriptomic levels using publicly available cohorts (n=13,430). MCM7 expression was evaluated and correlated with clinicopathological parameters including Ki67 labelling index and patient outcome.
Results: At the transcriptomic level, there was a significant association between high MCM7 mRNA levels and shorter patient survival in the whole cohort and in luminal BC class but not in the basel-like molecular subtype. High MCM7 protein expression was detected in 43% of patients and was significantly associated with parameters characteristic of aggressive tumour behaviour. MCM7 was independently associated with shorter survival, particularly in estrogen receptor-positive (luminal) BC. MCM7 stratified luminal tumours with aggressive clinicopathological features into distinct prognostic groups. In endocrine therapy treated BC patients, high MCM7 was associated with poor outcome but such association disappeared with administration of adjuvant chemotherapy. Patients with high expression of Ki67 and MCM7 showed worst survival while patients with double low expression BC showed the best outcome compared with single expression groups. 
Conclusion: The current findings indicate that MCM7 expression has a prognostic value in BC and can be used to identify luminal BC patients who can benefit from adjuvant chemotherapy.
DOI: 10.6084/m9.figshare.10273961.v3
title: distance code

description: python codes
DOI: 10.6084/m9.figshare.28569044.v1
title: Database divers research project ULagos.

description: Database divers research project ULagos.
DOI: 10.17632/d5kzm92nn3
title: Stable water isotope monitoring network of different water bodies in Shiyang River Basin, a typical arid river in China (Supplemental Edition 20210808)

description: Data set of isotopes of different water bodies (precipitation, surface water, groundwater,soil water, and plant water) in the Shiyang River Basin from 2015 to 2019. A total of 52 monitoring points were set up in the Shiyang River Basin , among which 35 were upstream, 6 in the midstream, and 11 in the downstream. 6,760 samples have been obtained, including 1,210 precipitation samples (P1-P12), 1,101 surface water samples (S1-S35), 161 groundwater samples (G1-G17), 3,779 soil water samples (S1-S18), and 509 plant water samples (P1-P12).
DOI: 10.6084/m9.figshare.11356838.v2
title: The clinical perioperative data of patients performed laparoscopic distal pancreatectomy or laparoscopic spleen-preserving distal pancreatectomy with simulation by three-dimensional virtual endoscopy.

description: The clinical perioperative data of patients performed laparoscopic distal pancreatectomy or laparoscopic spleen-preserving distal pancreatectomy with simulation by three-dimensional virtual endoscopy.
DOI: 10.6084/m9.figshare.26403919.v1
title: data_for_FLIM_flow_cytometry.xlsx

description: Data for FLIM flow cytometry
DOI: 10.6084/m9.figshare.21739121.v2
title: AmpSeqR_Report

description: The HTML summary report from AmpSeqR R package
DOI: 10.6084/m9.figshare.4557562.v1
title: Supporting Information.docx

description: The file “Supporting Information.docx” contains 12 appendices related to the paper "Selecting simultaneous actions of different durations to optimally manage an ecological network" (2017): <br>1) Description of Markov decision processes.<br>2) Calculation of the number of states of the exact model.<br>3) Proofs of upper and lower bounds.<br>4) Description of the inputs parameters required for the program.<br>5) Table of the effectiveness of different management actions on all Torres Strait Islands.<br>6) Belief Bayesian network providing the effectiveness of actions depending on four islands characteristics.<br>7) Parameters used in the Cauchy formula for the low and high transmissions.<br>8) Human population size and distances between islands.<br>9) Mean time until infestation of mainland Australia for the three models and six rules of thumb.<br>10) Prioritisation ranking on four islands for low and high transmission probabilities.<br>11) Relative errors of model performances compared to the upper bound with different sub-action durations.<br>12) Computational times of the exact, lower bound and upper bound models for low transmission probabilities.
DOI: 10.6084/m9.figshare.12143562.v3
title: A mass and energy conservation analysis of drift in the CMIP6 ensemble: supplementary metadata

description: This repository contains the details of the computational aspects of the following study: <br>Irving D, Hobbs W, Church J & Zika J (in press)<i>.</i> A mass and energy conservation analysis of drift in the CMIP6 ensemble. <i>Journal of Climate. </i>doi:10.1175/JCLI-D-20-0281.1 <br>The figures in the paper were generated by running a series of Python scripts at the command line. Those commands (denoted by the $ prompt) are outlined below with additional notes where necessary.<br>Any scripts in this repository that aren't referred to by name below are modules that are used by some/all of the scripts.<br><br>The software environment that the scripts were executed in is described by <i>environment.yml</i>. That environment can be installed using conda:$ conda env create -f environment.yml<br><br>(See https://docs.conda.io/en/latest/ for details.)<br><br><b>Figure 1</b><br>$ python plot_global_budget_variables.py ACCESS-CM2 r1i1p1f1 cmip6 --compfile figure1.png<br><br>In addition to creating a plot for one particular model, the <i>plot_global_budget_variables.py</i> script writes a text file containing the various trends/drifts and regression coefficients presented in the paper. The trends and coefficients for every model were stored in <i>drifts.csv</i> and <i>regression_coefficients.csv</i> respectively, which were then used to create most of the figures below.<br><br><b>Figure 2 </b><br><br>$ python plot_ohc_masso.py figure2.png --models ACCESS-CM2 ACCESS-ESM1-5 BCC-CSM2-MR BCC-ESM1 CNRM-CM6-1 CNRM-ESM2-1 E3SM-1-0 E3SM-1-1 EC-Earth3 EC-Earth3-Veg GFDL-CM4 GISS-E2-1-G GISS-E2-1-G-CC HadGEM3-GC31-LL IPSL-CM6A-LR MPI-ESM-1-2-HAM MPI-ESM1-2-HR MPI-ESM1-2-LR UKESM1-0-LL --runs r1i1p1f1 r1i1p1f1 r1i1p1f1 r1i1p1f1 r1i1p1f2 r1i1p1f2 r1i1p1f1 r1i1p1f1 r1i1p1f1 r1i1p1f1 r1i1p1f1 r1i1p1f1 r1i1p1f1 r1i1p1f1 r1i1p1f1 r1i1p1f1 r1i1p1f1 r1i1p1f1 r1i1p1f2 --colors tab:blue tab:blue tab:orange tab:orange tab:green tab:green tab:red tab:red tab:purple tab:purple tab:brown tab:brown tab:pink tab:pink tab:olive tab:olive tab:cyan tab:cyan tab:gray --linestyles solid dotted solid dotted solid dotted solid dotted solid dotted solid dotted solid dotted solid dotted solid dotted solid --ohc_outlier 1e24 --runmean_window 10<br><br><b>Figure 3</b><br><br>$ python plot_ohc_drift.py drifts.csv figure3.png<br><br><b>Figure 4 (and Table 4)</b><br><br>$ python plot_conservation_scatter.py drifts.csv figure4.png <br><br>In addition to creating a plot, the <i>plot_conservation_scatter.py</i> script outputs the ensemble median and interquartile range values shown in Table 4.<br><br><b>Figure 5</b><br><br>$ python plot_leakage.py drifts.csv figure5.png<br><br><b>Figure 6</b><br><br>$ python plot_regression_boxplot.py regression_coefficients.csv figure6.png<br><br><b>Figure S1</b><br><br>$ python plot_regression_coefs.py drifts.csv energy figureS1.png --cmip_line 21.5<br><br><b>Figure S2</b><br><br>$ python plot_regression_coefs.py drifts.csv mass figureS2.png --cmip_line 21.5<br>
DOI: 10.17632/pggm5wvg2n
title: InstancesCLSP-RM (Paper: https://www.preprints.org/manuscript/202304.0242/v4)

description: The capacitated lot-sizing problem with product recovery (CLSP-RM) holds significant
importance in reverse logistics but is notoriously complex (NP-hard). In
this study, two techniques are introduced to confront this challenge.
The first technique entails devising a linear optimization task that eliminates
capacity limitations across a wide problem spectrum, yielding a remarkably accurate
approximation of the optimal solution (Model A). This adaptable approach presents a
potent alternative and holds potential for extension to diverse problem categories
owing to its versatile nature.
The second technique (Model B) employs a simulation methodology utilizing Halton’s uniform
random numbers to address the issue. This randomized production search
method sidesteps considerations of production costs, inventory expenditures, and
production order when determining production batches .
Here are the input data and solution of each instance solved with model A and model B respectively.
There are about 4000 instances. (The test instances and solutions are available here: https://www.preprints.org/manuscript/202304.0242/v4 )
DOI: 10.4121/20141567.v1
title: A dataset of 10-year regional-scale soil moisture and soil temperature measurements at multiple depths on the Tibetan Plateau

description: Tibet-Obs is the first long-term soil moisture and soil temperature (SMST) observatory in the Tibetan Plateau (TP) covering different representative climatic and land surface conditions, which includes the Maqu, Naqu, and Ngari (including Ali and Shiquanhe) networks (Fig. 1). The released long-term (~10 years)SMST profile dataset includes original in-situ measurements at a 15-min interval collected between 2008 and 2019 for all the three networks and a spatially upscaled data for the Maqu and Shiquanhe networks.
DOI: 10.60893/figshare.jap.24935067.v1
title: Supplement Number 1

description: Elastic constant, electronic structure and related magnetic analysis.
DOI: 10.17632/jrgntpv8b8
title: Development of a deep learning model for epiretinal membrane detection in fundus photography

description: We retrospectively collected CFP (color fundus photography) data containing ERM (epiretinal membrane) from the eyecare healthcare center (B&VIIT Eye Center, Seoul, South Korea). We collected CFP images from the patients with ERM diagnosed with KCD code H3539 (IDC-10 code H35.379) . Sample anonymized CFP data with ERM was available at the publicly accessible repository.

Files: 256 by 256 pixels fundus photographs with epiretinal membrane
DOI: 10.21233/zz37-fx40
title: Okan-Ri ostracode surface sample dataset

description: Raw data for the Okan-Ri ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.17073707.v1
title: FTIR Silica Xerogel from corn husk.CSV

description: FTIR spectrum of silica xerogel synthesized from corn husk via the sol-gel method<br>