cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.60712/si-id222044.1
title: StrainInfo SI-ID 222044.1

description: StrainInfo dataset 222044 about a strain of Pseudomonas syringae pv. delphinii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222045.1
title: StrainInfo SI-ID 222045.1

description: StrainInfo dataset 222045 about a strain of Pseudomonas amygdali pv. lachrymans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221897.1
title: StrainInfo SI-ID 221897.1

description: StrainInfo dataset 221897 about a strain of Ralstonia solanacearum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221898.1
title: StrainInfo SI-ID 221898.1

description: StrainInfo dataset 221898 about a strain of Pseudomonas savastanoi pv. glycinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221899.1
title: StrainInfo SI-ID 221899.1

description: StrainInfo dataset 221899 about a strain of Pseudomonas savastanoi pv. glycinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221900.1
title: StrainInfo SI-ID 221900.1

description: StrainInfo dataset 221900 about a strain of Pseudomonas savastanoi pv. glycinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221975.1
title: StrainInfo SI-ID 221975.1

description: StrainInfo dataset 221975 about a strain of Pseudomonas syringae pv. syringae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.5519/qd.dfw3a4vn
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5357034 records)
DOI: 10.60712/si-id221976.1
title: StrainInfo SI-ID 221976.1

description: StrainInfo dataset 221976 about a strain of Pseudomonas syringae pv. syringae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221977.1
title: StrainInfo SI-ID 221977.1

description: StrainInfo dataset 221977 about a strain of Pseudomonas syringae pv. syringae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221978.1
title: StrainInfo SI-ID 221978.1

description: StrainInfo dataset 221978 about a strain of Pseudomonas syringae pv. syringae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222046.1
title: StrainInfo SI-ID 222046.1

description: StrainInfo dataset 222046 about a strain of Pseudomonas amygdali pv. mori. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222047.1
title: StrainInfo SI-ID 222047.1

description: StrainInfo dataset 222047 about a strain of Pseudomonas syringae pv. syringae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222048.1
title: StrainInfo SI-ID 222048.1

description: StrainInfo dataset 222048 about a strain of Pseudomonas syringae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222049.1
title: StrainInfo SI-ID 222049.1

description: StrainInfo dataset 222049 about a strain of Pseudomonas syringae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221901.1
title: StrainInfo SI-ID 221901.1

description: StrainInfo dataset 221901 about a strain of Pseudomonas savastanoi pv. phaseolicola. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221902.1
title: StrainInfo SI-ID 221902.1

description: StrainInfo dataset 221902 about a strain of Xanthomonas campestris. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.9qx3ba
title: Occurrence Download

description: A dataset containing 35026791 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Belgium)",
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Literature Occurrence, Specimen, Unknown evidence, Machine Observation)",
 "Year is greater than or equal to 1000",
 "Year is less than or equal to 2023",
 "HasCoordinate is true"
 ]
}

 The dataset includes 35026791 records from 559 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031758-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.3637910
title: Occurrence cubes at species level for European countries

description: This package contains aggregated occurrence data ("occurrence cubes") at species level for European countries. These occurrence cubes were generated by grouping species occurrence data from the Global Biodiversity Information Facility (GBIF) by year (year), 1x1km spatial EEA reference grid cell (eea_cell_code) and species (speciesKey). For each grouping, the number of occurrences found in GBIF (n) and the minimum coordinateUncertaintyInMeters (min_coord_uncertainty) are provided. The provided coordinateUncertaintyInMeters of an occurrence is taken into account when assigning it to a grid cell (see this code). The occurrence cubes can be used as input data for indicators, mapping and species distribution modelling.

The occurrence cubes are built on open science principles and intended to be completely reproducible:



The input data are publicly available on GBIF, with the download DOIs listed in the related identifiers of this package.

The code to process the data to cubes is publicly available on GitHub at https://github.com/trias-project/occ-cube (version 20240124).


Files



Occurrence cubes at species level per country: filename format countrycode_species_cube.csv.

Taxonomic information for species in a cube: filename format countrycode_species_info.csv.


Included countries



Belgium (BE): based on https://doi.org/10.15468/dl.9qx3ba

Italy (IT): based on https://doi.org/10.15468/dl.jghpm5

Lithuania (LT): based on https://doi.org/10.15468/dl.duegx2

Slovenia (SI): based on https://doi.org/10.15468/dl.9eky98

Romania (RO): based on https://doi.org/10.15468/dl.b7z5vw

Portugal (PT): based on https://doi.org/10.15468/dl.b89nr4


Occurrence cubes are added on demand. To include occurrence cubes for other European countries, leave an issue or contact the main author, or generate your own cube using the code in this repository.
description: This version adds the occurrence cube for Portugal and updates the other occurrence cubes with more recent occurrence data, see datasets mentioned above and in Related works.
DOI: 10.60712/si-id221903.1
title: StrainInfo SI-ID 221903.1

description: StrainInfo dataset 221903 about a strain of Xanthomonas campestris. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221904.1
title: StrainInfo SI-ID 221904.1

description: StrainInfo dataset 221904 about a strain of Xanthomonas campestris. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/mv7mat
title: Killer whale (Orcinus orca) interactions with blue-eye trevalla (Hyperoglyphe antarctica) longline fisheries , Australia and Amsterdam/St. Paul Islands (2010-2016)

description: This study investigated killer whale interactions with two geographically isolated blue-eye trevalla (Hyperoglyphe antarctica) fisheries operating in temperate waters off Amsterdam/St. Paul Islands (Indian Ocean) and south-eastern Australia. These two fisheries differ in the fishing technique used (vertical vs. demersal longlines), effort, catch, fleet size and fishing area size. Using 7-year (2010-16) long fishing and observation datasets, this study estimated the levels of killer whale interactions and examined the influence of spatio-temporal and operational variables on the probability of vessels to experience interactions.
DOI: 10.60712/si-id221979.1
title: StrainInfo SI-ID 221979.1

description: StrainInfo dataset 221979 about a strain of Pseudomonas syringae pv. syringae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221980.1
title: StrainInfo SI-ID 221980.1

description: StrainInfo dataset 221980 about a strain of Pseudomonas syringae pv. syringae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221981.1
title: StrainInfo SI-ID 221981.1

description: StrainInfo dataset 221981 about a strain of Pseudomonas syringae pv. syringae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222050.1
title: StrainInfo SI-ID 222050.1

description: StrainInfo dataset 222050 about a strain of Pseudomonas syringae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222051.1
title: StrainInfo SI-ID 222051.1

description: StrainInfo dataset 222051 about a strain of Pseudomonas syringae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222052.1
title: StrainInfo SI-ID 222052.1

description: StrainInfo dataset 222052 about a strain of Pseudomonas syringae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221905.1
title: StrainInfo SI-ID 221905.1

description: StrainInfo dataset 221905 about a strain of Xanthomonas campestris. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221906.1
title: StrainInfo SI-ID 221906.1

description: StrainInfo dataset 221906 about a strain of Xanthomonas campestris. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221907.1
title: StrainInfo SI-ID 221907.1

description: StrainInfo dataset 221907 about a strain of Ralstonia solanacearum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221908.1
title: StrainInfo SI-ID 221908.1

description: StrainInfo dataset 221908 about a strain of Ralstonia solanacearum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221982.1
title: StrainInfo SI-ID 221982.1

description: StrainInfo dataset 221982 about a strain of Pseudomonas syringae pv. syringae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221983.1
title: StrainInfo SI-ID 221983.1

description: StrainInfo dataset 221983 about a strain of Pseudomonas syringae pv. syringae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221984.1
title: StrainInfo SI-ID 221984.1

description: StrainInfo dataset 221984 about a strain of Pseudomonas syringae pv. syringae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.2tmmrv
title: Occurrence Download

description: A dataset containing 785 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Nova Scotia Museum - Marine Birds, Mammals, and Fishes"
 ]
}

 The dataset includes 785 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082126-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id221985.1
title: StrainInfo SI-ID 221985.1

description: StrainInfo dataset 221985 about a strain of Pseudomonas syringae pv. syringae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222053.1
title: StrainInfo SI-ID 222053.1

description: StrainInfo dataset 222053 about a strain of Pseudomonas amygdali pv. tabaci. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222054.1
title: StrainInfo SI-ID 222054.1

description: StrainInfo dataset 222054 about a strain of Pseudomonas syringae pv. syringae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222055.1
title: StrainInfo SI-ID 222055.1

description: StrainInfo dataset 222055 about a strain of Pseudomonas amygdali pv. tabaci. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222056.1
title: StrainInfo SI-ID 222056.1

description: StrainInfo dataset 222056 about a strain of Pseudomonas syringae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221909.1
title: StrainInfo SI-ID 221909.1

description: StrainInfo dataset 221909 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221910.1
title: StrainInfo SI-ID 221910.1

description: StrainInfo dataset 221910 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221911.1
title: StrainInfo SI-ID 221911.1

description: StrainInfo dataset 221911 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.h7cp6s
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hesperocidaris perplexa (H.L.Clark, 1907)"
 ]
}

 The dataset includes 47 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009573-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id221912.1
title: StrainInfo SI-ID 221912.1

description: StrainInfo dataset 221912 about a strain of Dickeya chrysanthemi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221986.1
title: StrainInfo SI-ID 221986.1

description: StrainInfo dataset 221986 about a strain of Pseudomonas syringae pv. syringae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221987.1
title: StrainInfo SI-ID 221987.1

description: StrainInfo dataset 221987 about a strain of Colletotrichum dematium. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221988.1
title: StrainInfo SI-ID 221988.1

description: StrainInfo dataset 221988 about a strain of Pseudomonas syringae pv. syringae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221989.1
title: StrainInfo SI-ID 221989.1

description: StrainInfo dataset 221989 about a strain of Pseudomonas syringae pv. syringae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222057.1
title: StrainInfo SI-ID 222057.1

description: StrainInfo dataset 222057 about a strain of Pseudomonas syringae pv. helianthi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222058.1
title: StrainInfo SI-ID 222058.1

description: StrainInfo dataset 222058 about a strain of Pseudomonas amygdali pv. lachrymans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222059.1
title: StrainInfo SI-ID 222059.1

description: StrainInfo dataset 222059 about a strain of Pseudomonas amygdali pv. tabaci. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221913.1
title: StrainInfo SI-ID 221913.1

description: StrainInfo dataset 221913 about a strain of Dickeya chrysanthemi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id222060.1
title: StrainInfo SI-ID 222060.1

description: StrainInfo dataset 222060 about a strain of Pseudomonas amygdali pv. mori. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221914.1
title: StrainInfo SI-ID 221914.1

description: StrainInfo dataset 221914 about a strain of Pseudomonas savastanoi pv. phaseolicola. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221915.1
title: StrainInfo SI-ID 221915.1

description: StrainInfo dataset 221915 about a strain of Pseudomonas savastanoi pv. phaseolicola. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id221990.1
title: StrainInfo SI-ID 221990.1

description: StrainInfo dataset 221990 about a strain of Rhizobium. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.