cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8981597
title: Additional file 10: of Genomic and epigenomic predictors of response to guadecitabine in relapsed/refractory acute myelogenous leukemia

description: Table S8. Characteristics of r/r AML patients by baseline gene expression cluster in phase I (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8981600.v1
title: Additional file 4: of A combined epigenome- and transcriptome-wide association study of the oral masticatory mucosa assigns CYP1B1 a central role for epithelial health in smokers

description: Results from the KEGG and Reactome Pathway Analyses of Differentially Expressed Genes. (XLSX 76 kb)
DOI: 10.6084/m9.figshare.8981603.v1
title: Additional file 11: of Genomic and epigenomic predictors of response to guadecitabine in relapsed/refractory acute myelogenous leukemia

description: Table S9. Characteristics of r/r AML patients by baseline gene expression cluster in phase II (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8981594.v1
title: Additional file 3: of A combined epigenome- and transcriptome-wide association study of the oral masticatory mucosa assigns CYP1B1 a central role for epithelial health in smokers

description: Median TPM values from RNA-Sequencing. Transcripts were ranked according to their median TPM value in the EWAS samples, with the highest expressed genes on top. (XLSX 1299 kb)
DOI: 10.6084/m9.figshare.8981588
title: Additional file 1: of A combined epigenome- and transcriptome-wide association study of the oral masticatory mucosa assigns CYP1B1 a central role for epithelial health in smokers

description: CpGs from the literature associated with SPY in our data. Results are shown for the ANCOVA with SPY for all CpGs with qâ
DOI: 10.6084/m9.figshare.8981591
title: Additional file 2: of A combined epigenome- and transcriptome-wide association study of the oral masticatory mucosa assigns CYP1B1 a central role for epithelial health in smokers

description: Results of the EpiDISH cell type deconvolution. Estimates for the different cell type fractions are given each for the EWAS samples and the OSCC samples, each also additionally divided into the subsets smokers and non-smokers. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.8981597.v1
title: Additional file 10: of Genomic and epigenomic predictors of response to guadecitabine in relapsed/refractory acute myelogenous leukemia

description: Table S8. Characteristics of r/r AML patients by baseline gene expression cluster in phase I (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8981588.v1
title: Additional file 1: of A combined epigenome- and transcriptome-wide association study of the oral masticatory mucosa assigns CYP1B1 a central role for epithelial health in smokers

description: CpGs from the literature associated with SPY in our data. Results are shown for the ANCOVA with SPY for all CpGs with qâ
DOI: 10.6084/m9.figshare.8981591.v1
title: Additional file 2: of A combined epigenome- and transcriptome-wide association study of the oral masticatory mucosa assigns CYP1B1 a central role for epithelial health in smokers

description: Results of the EpiDISH cell type deconvolution. Estimates for the different cell type fractions are given each for the EWAS samples and the OSCC samples, each also additionally divided into the subsets smokers and non-smokers. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.8981576
title: Additional file 1: of Analysis of the pathogenic variants of BRCA1 and BRCA2 using next-generation sequencing in women with familial breast cancer: a case–control study

description: Table S1. Genetic Database. Excel file with total data about genetic variants in BRCA1/2 about the three groups; Healthy, Sporadic, and Hereditary. (XLSX 83 kb)
DOI: 10.6084/m9.figshare.8981576.v1
title: Additional file 1: of Analysis of the pathogenic variants of BRCA1 and BRCA2 using next-generation sequencing in women with familial breast cancer: a case–control study

description: Table S1. Genetic Database. Excel file with total data about genetic variants in BRCA1/2 about the three groups; Healthy, Sporadic, and Hereditary. (XLSX 83 kb)
DOI: 10.6084/m9.figshare.8981522
title: Additional file 1: of Increased PHGDH expression promotes aberrant melanin accumulation

description: Figure S1. Generation of the PHGDHtetO allele. Figure S2. Tissues from mice with long-term exposure to doxycycline diet show variable PHGDH expression. Figure S3. PHGDH expression leads to melanin accumulation in earlyÂ anagen hair follicles but does not globally affect timing of the hair follicle cycle. Figure S4. Validation of species-specific PHGDH qPCR primers. Figure S5. Evidence that adipocytes and keratinocytes sort into the GFP- fraction when cells are isolated from the skin of PHGDHtetO; Dct-rtTA; H2B-GFPtetO mice. Supplementary methods. (ZIP 1160 kb)
DOI: 10.6084/m9.figshare.8981522.v1
title: Additional file 1: of Increased PHGDH expression promotes aberrant melanin accumulation

description: Figure S1. Generation of the PHGDHtetO allele. Figure S2. Tissues from mice with long-term exposure to doxycycline diet show variable PHGDH expression. Figure S3. PHGDH expression leads to melanin accumulation in earlyÂ anagen hair follicles but does not globally affect timing of the hair follicle cycle. Figure S4. Validation of species-specific PHGDH qPCR primers. Figure S5. Evidence that adipocytes and keratinocytes sort into the GFP- fraction when cells are isolated from the skin of PHGDHtetO; Dct-rtTA; H2B-GFPtetO mice. Supplementary methods. (ZIP 1160 kb)
DOI: 10.6084/m9.figshare.8981474
title: Additional file 2: of Knowledge and use of e-cigarettes among nursing students: results from a cross-sectional survey in north-eastern Italy

description: Dataset. (XLS 382 kb)
DOI: 10.6084/m9.figshare.8981474.v1
title: Additional file 2: of Knowledge and use of e-cigarettes among nursing students: results from a cross-sectional survey in north-eastern Italy

description: Dataset. (XLS 382 kb)
DOI: 10.6084/m9.figshare.8981384
title: Additional file 8: of Subtyping of microsatellite instability-high colorectal cancer

description: Table S3. Differentially methylated sites between MSI-H1 and MSI-H2 identified in this study. (XLSX 251 kb)
DOI: 10.6084/m9.figshare.8981384.v1
title: Additional file 8: of Subtyping of microsatellite instability-high colorectal cancer

description: Table S3. Differentially methylated sites between MSI-H1 and MSI-H2 identified in this study. (XLSX 251 kb)
DOI: 10.6084/m9.figshare.8981372
title: Additional file 6: of Subtyping of microsatellite instability-high colorectal cancer

description: Table S2. DEGs identified between MSI-H1 and H2 for TCGA and GSE39582. (XLSX 359 kb)
DOI: 10.6084/m9.figshare.8981372.v1
title: Additional file 6: of Subtyping of microsatellite instability-high colorectal cancer

description: Table S2. DEGs identified between MSI-H1 and H2 for TCGA and GSE39582. (XLSX 359 kb)
DOI: 10.6084/m9.figshare.8981363
title: Additional file 8: of Functional genomics identifies predictive markers and clinically actionable resistance mechanisms to CDK4/6 inhibition in bladder cancer

description: Table S3. IC50 and Combination Index analysis of combination therapies in RT112 cells. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.8981357
title: Additional file 7: of Functional genomics identifies predictive markers and clinically actionable resistance mechanisms to CDK4/6 inhibition in bladder cancer

description: Table S2. Analysis of screen and TCGA data. (a) NGS analysis with MaGeck (significant candidate sgRNAs with FDR cutoff 0.1 and high_in_treatmentâ =â true). (b) list of converted screen sgRNA candidates to official gene symbols, (c) Candidate genes with clinical amplification on CNA based on Comprehensive analysis of muscle-invasive bladder cancers characterized by multiple TCGA analytical platforms on CbioPortal. (XLSX 9460 kb)
DOI: 10.6084/m9.figshare.8981363.v1
title: Additional file 8: of Functional genomics identifies predictive markers and clinically actionable resistance mechanisms to CDK4/6 inhibition in bladder cancer

description: Table S3. IC50 and Combination Index analysis of combination therapies in RT112 cells. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.8981354
title: Additional file 7: of Comparative genomic analysis revealed great plasticity and environmental adaptation of the genomes of Enterococcus faecium

description: List of environment-specific genes (XLSX 30 kb)
DOI: 10.6084/m9.figshare.8981357.v1
title: Additional file 7: of Functional genomics identifies predictive markers and clinically actionable resistance mechanisms to CDK4/6 inhibition in bladder cancer

description: Table S2. Analysis of screen and TCGA data. (a) NGS analysis with MaGeck (significant candidate sgRNAs with FDR cutoff 0.1 and high_in_treatmentâ =â true). (b) list of converted screen sgRNA candidates to official gene symbols, (c) Candidate genes with clinical amplification on CNA based on Comprehensive analysis of muscle-invasive bladder cancers characterized by multiple TCGA analytical platforms on CbioPortal. (XLSX 9460 kb)
DOI: 10.6084/m9.figshare.8981354.v1
title: Additional file 7: of Comparative genomic analysis revealed great plasticity and environmental adaptation of the genomes of Enterococcus faecium

description: List of environment-specific genes (XLSX 30 kb)
DOI: 10.6084/m9.figshare.8981342
title: Additional file 6: of Comparative genomic analysis revealed great plasticity and environmental adaptation of the genomes of Enterococcus faecium

description: The virulence factors in the 161 isolates of Enterococcus faecium (XLSX 32 kb)
DOI: 10.6084/m9.figshare.8981345
title: Additional file 6: of Functional genomics identifies predictive markers and clinically actionable resistance mechanisms to CDK4/6 inhibition in bladder cancer

description: Table S1. Genotyping of cell lines used and list of primers and sgRNAs. (a) Genotyping of T24 and RT112, (b) List of primer and sgRNA sequences used. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8981342.v1
title: Additional file 6: of Comparative genomic analysis revealed great plasticity and environmental adaptation of the genomes of Enterococcus faecium

description: The virulence factors in the 161 isolates of Enterococcus faecium (XLSX 32 kb)
DOI: 10.6084/m9.figshare.8981345.v1
title: Additional file 6: of Functional genomics identifies predictive markers and clinically actionable resistance mechanisms to CDK4/6 inhibition in bladder cancer

description: Table S1. Genotyping of cell lines used and list of primers and sgRNAs. (a) Genotyping of T24 and RT112, (b) List of primer and sgRNA sequences used. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8981333
title: Additional file 1: of Subtyping of microsatellite instability-high colorectal cancer

description: Table S1. Clinical information of TCGA and GSE39582 samples used in this study. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.8981330
title: Additional file 5: of Comparative genomic analysis revealed great plasticity and environmental adaptation of the genomes of Enterococcus faecium

description: The antibiotic resistance genes in the 161 isolates of Enterococcus faecium (XLSX 71 kb)
DOI: 10.6084/m9.figshare.8981333.v1
title: Additional file 1: of Subtyping of microsatellite instability-high colorectal cancer

description: Table S1. Clinical information of TCGA and GSE39582 samples used in this study. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.8981330.v1
title: Additional file 5: of Comparative genomic analysis revealed great plasticity and environmental adaptation of the genomes of Enterococcus faecium

description: The antibiotic resistance genes in the 161 isolates of Enterococcus faecium (XLSX 71 kb)
DOI: 10.6084/m9.figshare.8981315
title: Additional file 10: of Subtyping of microsatellite instability-high colorectal cancer

description: Table S4. Deconvolution of TCGA and GSE39582 TIL populations by CIBERSORT. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.8981315.v1
title: Additional file 10: of Subtyping of microsatellite instability-high colorectal cancer

description: Table S4. Deconvolution of TCGA and GSE39582 TIL populations by CIBERSORT. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.8981297
title: Additional file 2: of Comparative genomic analysis revealed great plasticity and environmental adaptation of the genomes of Enterococcus faecium

description: The length distribution of coding DNA sequences (CDSs) in Enterococcus faecium genomes. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.8981291
title: Additional file 1: of Comparative genomic analysis revealed great plasticity and environmental adaptation of the genomes of Enterococcus faecium

description: List of the Enterococcus faecium isolates analysed in this study. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.8981297.v1
title: Additional file 2: of Comparative genomic analysis revealed great plasticity and environmental adaptation of the genomes of Enterococcus faecium

description: The length distribution of coding DNA sequences (CDSs) in Enterococcus faecium genomes. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.8981291.v1
title: Additional file 1: of Comparative genomic analysis revealed great plasticity and environmental adaptation of the genomes of Enterococcus faecium

description: List of the Enterococcus faecium isolates analysed in this study. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.8981231
title: Additional file 9: of Prediction of regulatory long intergenic non-coding RNAs acting in trans through base-pairing interactions

description: Table S1. Summary of the main characteristics of lincRNAs. (XLSX 183 kb)
DOI: 10.6084/m9.figshare.8981231.v1
title: Additional file 9: of Prediction of regulatory long intergenic non-coding RNAs acting in trans through base-pairing interactions

description: Table S1. Summary of the main characteristics of lincRNAs. (XLSX 183 kb)
DOI: 10.6084/m9.figshare.8981171
title: Additional file 11: of Prediction of regulatory long intergenic non-coding RNAs acting in trans through base-pairing interactions

description: Table S3. LincRNAs with potential regulatory functions. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.8981165
title: Additional file 10: of Prediction of regulatory long intergenic non-coding RNAs acting in trans through base-pairing interactions

description: Table S2. Expression level of lincRNAs under various experimental conditions. (XLSX 123 kb)
DOI: 10.6084/m9.figshare.8981171.v1
title: Additional file 11: of Prediction of regulatory long intergenic non-coding RNAs acting in trans through base-pairing interactions

description: Table S3. LincRNAs with potential regulatory functions. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.8981165.v1
title: Additional file 10: of Prediction of regulatory long intergenic non-coding RNAs acting in trans through base-pairing interactions

description: Table S2. Expression level of lincRNAs under various experimental conditions. (XLSX 123 kb)
DOI: 10.6084/m9.figshare.8981159
title: Additional file 6: of Pea genomic selection for Italian environments

description: Archive S1. A compressed archive containing the reference genome, the genotypes for five missing data thresholds, the kinship matrices, the phenotypes and a phenotype-genotype coupling table. (ZIP 8471 kb)
DOI: 10.6084/m9.figshare.8981153
title: Additional file 5: of Pea genomic selection for Italian environments

description: Table S4. Rank, association score and sequence of markers associated with onset of flowering (OF), grain yield (GY), lodging susceptibility (LS), seed weight (SW) and winter survival (WS), and linkage disequilibrium analysis of these markers with SNP array markers in the consensus map by Ferrari et al. [42]. (XLS 44 kb)
DOI: 10.6084/m9.figshare.8981156
title: Additional file 1 of Correction to: Siah2 modulates sex-dependent metabolic and inflammatory responses in adipose tissue to a high-fat diet challenge

description: Related to Gene Expression Analysis. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.8981153.v1
title: Additional file 5: of Pea genomic selection for Italian environments

description: Table S4. Rank, association score and sequence of markers associated with onset of flowering (OF), grain yield (GY), lodging susceptibility (LS), seed weight (SW) and winter survival (WS), and linkage disequilibrium analysis of these markers with SNP array markers in the consensus map by Ferrari et al. [42]. (XLS 44 kb)
DOI: 10.6084/m9.figshare.8981156.v1
title: Additional file 1 of Correction to: Siah2 modulates sex-dependent metabolic and inflammatory responses in adipose tissue to a high-fat diet challenge

description: Related to Gene Expression Analysis. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.8981159.v2
title: Additional file 6: of Pea genomic selection for Italian environments

description: Archive S1. A compressed archive containing the reference genome, the genotypes for five missing data thresholds, the kinship matrices, the phenotypes and a phenotype-genotype coupling table. (ZIP 8471 kb)
DOI: 10.6084/m9.figshare.8981159.v1
title: Additional file 6: of Pea genomic selection for Italian environments

description: Archive S1. A compressed archive containing the reference genome, the genotypes for five missing data thresholds, the kinship matrices, the phenotypes and a phenotype-genotype coupling table. (ZIP 8471 kb)
DOI: 10.6084/m9.figshare.8981123
title: Additional file 2: of Genetic loci regulating arsenic content in rice grains when grown flooded or under alternative wetting and drying irrigation

description: Table S2. Clump analysis of the significant SNPs associated with grain and shoot arsenic concentration. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8981114
title: Additional file 1: of Genetic loci regulating arsenic content in rice grains when grown flooded or under alternative wetting and drying irrigation

description: Table S1. Phenotype data used for genome wide association analysis. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.8981123.v1
title: Additional file 2: of Genetic loci regulating arsenic content in rice grains when grown flooded or under alternative wetting and drying irrigation

description: Table S2. Clump analysis of the significant SNPs associated with grain and shoot arsenic concentration. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8981114.v1
title: Additional file 1: of Genetic loci regulating arsenic content in rice grains when grown flooded or under alternative wetting and drying irrigation

description: Table S1. Phenotype data used for genome wide association analysis. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.8981105
title: MOESM1 of In silico investigation of mitragynine and 7-hydroxymitragynine metabolism

description: Additional file 1. All output files and other associated codes to obtain the standard Gibbs energies of reaction are provided.
DOI: 10.6084/m9.figshare.8980775
title: Data for SNA dung trader

description: Data for SNA, dung trader, cattle, FMD, Northern Thailand<br>
DOI: 10.6084/m9.figshare.8981105.v1
title: MOESM1 of In silico investigation of mitragynine and 7-hydroxymitragynine metabolism

description: Additional file 1. All output files and other associated codes to obtain the standard Gibbs energies of reaction are provided.
DOI: 10.6084/m9.figshare.8980592
title: PEFR and chronic respiratory symptoms

description: All Data set for this study.
DOI: 10.6084/m9.figshare.8980775.v1
title: Data for SNA dung trader

description: Data for SNA, dung trader, cattle, FMD, Northern Thailand<br>
DOI: 10.6084/m9.figshare.8980586
title: Comparative transcriptome profiling of immune response against Vibrio harveyi infection in Chinese tongue sole. (The DEGs presented in the Venn diagram)

description: <i>Vibrio harveyi</i>is a major bacterial pathogen that causes fatal vibriosis in Chinese tongue sole (<i>Cynoglossus semilaevis</i>), which have resulted in huge mortalities in the farming industry. However, the molecular mechanisms of <i>C. semilaevis</i>response against <i>V. harveyi </i>infection is poorly understood. Here, we performed transcriptome analysis of <i>C. semilaevis</i>between resistant family and susceptible family under <i>V. harveyi</i>challenging and control conditions.
DOI: 10.6084/m9.figshare.8980592.v2
title: PEFR and chronic respiratory symptoms

description: All Data set for this study.
DOI: 10.6084/m9.figshare.8980592.v1
title: PEFR and chronic respiratory symptoms

description: All Data set for this study.
DOI: 10.26180/5d3695e37d1b2
title: Data for: Evolutionary drivers of seasonal plumage colours: colour change by moult correlates with sexual selection, predation risk and seasonality across passerines

description: This data file contains the following data for passerine species: <br>- Seasonal plumage colours for males and females (presence/absence)- Mating system (scored from 0-3: 0 = strict social monogamy, 1 = social monogamy with infrequent instances of social polygyny observed, 2 = social monogamy with regular facultative social polygyny, and 3 = obligate resource defence polygyny or lek polygyny)- Paternal care (presence/absence)- Sexual dichromatism- Log body mass- Percentage ground foraging (obtained from Wilman et al. 2014. Ecology, 95, 20–21)- Percent tree cover within the breeding range - Precipitation seasonality within the breeding range- Temperature seasonality within the breeding range- Migration status (0 = resident, 1 = partial migration and 2 = complete migration)- Research effort (obtained from Ducatez and Lefebvre 2014. PLoS One, 9, e89955)Species names (TipLabel) match those at www.birdtree.org. For further details (including source references), please see the accompanying research article. <br><br>
DOI: 10.6084/m9.figshare.8980559
title: Globe-LFMC, a global plant water status database for vegetation ecophysiology and wildfire applications

description: Globe-LFMC is an extensive global database of live fuel moisture content (LFMC) measured from 1,383 sampling sites in 11 countries: Argentina, Australia, China, France, Italy, Senegal, Spain, South Africa, Tunisia, United Kingdom and the United States of America. The database contains 161,717 individual records based on in situ destructive samples used to measure LFMC, representing the amount of water in plant leaves per unit of dry matter. The primary goal of the database is to calibrate and validate remote sensing algorithms used to predict LFMC. However, this database is also relevant for the calibration and validation of dynamic global vegetation models, eco-physiological models of plant water stress as well as understanding the physiological drivers of spatiotemporal variation in LFMC at local, regional and global scales. Globe-LFMC should be useful for studying LFMC trends in response to environmental change and LFMC influence on wildfire occurrence, wildfire behavior, and overall vegetation health.<br><b>Change Notice - Globe-LFCM-v2.xlsx </b><b>:</b>Some site’s coordinates from Spain and California were affected by a wrong transformation between coordinate reference systems.<br>The original Spanish UTM coordinates were mistakenly considered to be in the geodetic datum WGS84 instead of the ED50 datum. Thus, those original coordinates have been transformed again, using the correct datum.The original Californian UTM coordinates were mistakenly considered to be in the geodetic datum WGS84 instead of the NAD27 datum. Thus, those original coordinates have been transformed again, using the correct datum.<br>As a consequence of these changes, the columns “Land Cover”, “NDVI CV min”, “NDVI CV max”, “NDVI SD min”, “NDVI SD max” have been corrected and updated.
DOI: 10.6084/m9.figshare.8980541
title: Photos of the sites

description: Photos of some of the sites included in Globe-LFMC