cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21440865
title: Dissertation (Dr. med.) - Genotyp-Phänotyp-Untersuchung an einer Münchner Kohorte von Patienten mit krankheitsursächlichen Varianten in COL4A3 und COL4A4 assoziiert mit dem Alport-Syndrom und der Nephropathie vom Typ der dünnen Basalmembran - Supplementäre Tabelle 1: Studienkohorte.

description: Supplementäre Tabelle der Dissertation (Dr. med.) „Genotyp-Phänotyp-Untersuchung an einer Münchner Kohorte von Patienten mit krankheitsursächlichen Varianten in <em>COL4A3</em> und <em>COL4A4</em> assoziiert mit dem Alport-Syndrom und der Nephropathie vom Typ der dünnen Basalmembran" von Hannes Bastian Simmendinger, Institut für Humangenetik, Klinikum rechts der Isar, Technische Universität München (TUM), München, Deutschland. <br> Das Ziel dieser Doktorarbeit ist es, eine mögliche Genotyp-Phänotyp-Korrelation bzgl. (wahrscheinlich) pathogener Varianten in <em>COL4A3</em>/<em>COL4A4</em> und klinischer Daten wie Prävalenz und Alter bei Erstmanifestation von Symptomen aus dem Formenkreis des ARAS bzw. der TBMN bei einer Münchner Patientenkohorte zu untersuchen. Zukünftig könnte so bereits mittels einer Sequenzanalyse neben dem Erbgang eine Prognose zum Verlauf des ARAS bzw. der TBMN gestellt und eine eventuell notwendige Therapie frühzeitig und in adäquater Dosierung eingeleitet werden. <br> Die supplementäre Tabelle enthält umfassende phänotypische und genotypische Informationen der 89 Patienten der Studienkohorte, die aus der größeren Kohorte des Nephrogen-Projekts des Instituts für Humangenetik, Klinikum rechts der Isar, Technische Universität München (TUM), München, Deutschland rekrutiert wurden.
DOI: 10.6084/m9.figshare.21440895
title: Dissertation (Dr. med.) - Genotyp-Phänotyp-Untersuchung an einer Münchner Kohorte von Patienten mit krankheitsursächlichen Varianten in COL4A3 und COL4A4 assoziiert mit dem Alport-Syndrom und der Nephropathie vom Typ der dünnen Basalmembran - Supplementäre Tabelle 2: Aus der Studienkohorte ausgeschlossene Patienten.

description: Supplementäre Tabelle der Dissertation (Dr. med.) „Genotyp-Phänotyp-Untersuchung an einer Münchner Kohorte von Patienten mit krankheitsursächlichen Varianten in <em>COL4A3</em> und <em>COL4A4</em> assoziiert mit dem Alport-Syndrom und der Nephropathie vom Typ der dünnen Basalmembran" von Hannes Bastian Simmendinger, Institut für Humangenetik, Klinikum rechts der Isar, Technische Universität München (TUM), München, Deutschland. <br> Das Ziel dieser Doktorarbeit ist es, eine mögliche Genotyp-Phänotyp-Korrelation bzgl. (wahrscheinlich) pathogener Varianten in <em>COL4A3</em>/<em>COL4A4</em> und klinischer Daten wie Prävalenz und Alter bei Erstmanifestation von Symptomen aus dem Formenkreis des ARAS bzw. der TBMN bei einer Münchner Patientenkohorte zu untersuchen. Zukünftig könnte so bereits mittels einer Sequenzanalyse neben dem Erbgang eine Prognose zum Verlauf des ARAS bzw. der TBMN gestellt und eine eventuell notwendige Therapie frühzeitig und in adäquater Dosierung eingeleitet werden. <br> Die supplementäre Tabelle enthält umfassende phänotypische und genotypische Informationen der 22 aus der Studienkohorte ausgeschlossenen Patienten, die aus der größeren Kohorte des Nephrogen-Projekts des Instituts für Humangenetik, Klinikum rechts der Isar, Technische Universität München (TUM), München, Deutschland rekrutiert wurden.
DOI: 10.6084/m9.figshare.24710238
title: Large data files for 3011979 Python demo

description: These are demo data files used to teach machine learning with Python in 3011979 course at Chulalongkorn University in Spring 2021 and Spring 2022
DOI: 10.25345/c5xk8517p
title: MassIVE MSV000093546 - 20231127_Labelled metabolomes_
title: Data dependent analysis in positive mode of bacterial labelled metabolomes.
DOI: 10.25828/ycgf-a446
title: Cross Country Mean Firm Size Dataset 1950-2022
DOI: 10.25919/8s6q-5082
title: Parkes observations for project P1219 semester 2023OCTS_05

description: The magnetic field potentially regulates the process of star formation and the evolution of molecular clouds. It is inherently difficult to measure interstellar magnetic field strengths, with the measurement of Zeeman splitting a unique method to estimate the magnetic field strength along the line of sight directly. Despite the detection of Zeeman splitting in other mediums, there are as yet no Zeeman detections against compact background sources in quiescent molecular clouds or the cold neutral medium. Pulsars with extremely small solid angles and relatively high transverse velocities are ideal background sources to study the magnetic field in molecular clouds, providing a distinct signal to measure splitting against. There are four pulsars with OH absorption detections, namely PSR B1849+00, B1641-45, B1718-35, and B1749-28. We propose to utilize these four pulsars to explore the properties of the magnetic field and its variations within molecular clouds through both the Zeeman splitting of OH absorption and rotation measure estimations, between epochs. If a detection is confirmed, it will open a new window on the hard-to-measure magnetic fields in molecular clouds, independent of interpretation, thus shedding light on the physics of star formation and the interstellar medium.
DOI: 10.6084/m9.figshare.24125748
title: Wajilitag geochemical data

description: This document contains whole-rock major, trace elements, Nd isotopic compositions and minerals major elements compositions of Wajilitag igneous rocks from Tarim large igneous provinces to build the figures in the main text
DOI: 10.6084/m9.figshare.24125748.v2
title: Wajilitag geochemical data

description: This document contains whole-rock major, trace elements, Nd isotopic compositions and minerals major elements compositions of Wajilitag igneous rocks from Tarim large igneous provinces to build the figures in the main text
DOI: 10.6084/m9.figshare.24125748.v1
title: Wajilitag geochemical data

description: This document contains whole-rock major, trace elements, Nd isotopic compositions and minerals major elements compositions of Wajilitag igneous rocks from Tarim large igneous provinces to build the figures in the main text
DOI: 10.11583/dtu.24107256.v1
title: Raw data for "A Window into the Human Immune System: Comprehensive Characterization of the Complexity of Antibody Complementary Determining Regions in functional antibodies"

description: Supplemental materials for the paper "A window into the human immune system: comprehensive characterization of the complexity of antibody complementary-determining regions in functional antibodies". The files contain raw data used for the analysis in the study. Please refer to the published paper for further information.
DOI: 10.11583/dtu.24107256
title: Raw data for "A Window into the Human Immune System: Comprehensive Characterization of the Complexity of Antibody Complementary Determining Regions in functional antibodies"

description: Supplemental materials for the paper "A window into the human immune system: comprehensive characterization of the complexity of antibody complementary-determining regions in functional antibodies". The files contain raw data used for the analysis in the study. Please refer to the published paper for further information.
DOI: 10.5281/zenodo.10245117
title: National Open Access Monitor, Draft Report: Stakeholder Feedback: Response Dataset

description: This dataset contains the response data from the 'National Open Access Monitor, Draft Report: Stakeholder Feedback' Form which was open from 16th to 30th November 2023 under the National Open Access Monitor Project. A PDF reference copy of the Feedback Form is available here: https://zenodo.org/doi/10.5281/zenodo.10141988
The purpose of the form was to capture stakeholder feedback on the National Open Access Monitor, Ireland Draft Report, for actioning by OpenAIRE in the final National Open Access Monitor Report to be delivered in January 2024. The draft is an interim report, and includes reference to the initial feedback from IReL and the National Open Access Monitor Project Advisory Group.
To note: 

Responses have been pseudonymised to the level of stakeholder-group e.g. Contributor I, Research Performing Organisation I, where requested by the participant in the participant consent form: https://doi.org/10.5281/zenodo.7589770
This is the original raw data file, in csv format, as downloaded from the Online Surveys platform and subsequently pseudonymised.
-----------------------
The context for the feedback form is detailed in the National Open Access Monitor Project Plan: https://doi.org/10.5281/zenodo.7331431, the National Open Access Monitor Advisory Group Meeting Minutes, 27th October 2023: https://zenodo.org/doi/10.5281/zenodo.10105023 and the OpenAIRE National Open Access Monitor Ireland, Draft Report: https://zenodo.org/doi/10.5281/zenodo.10136295
This project is managed by IReL and has received funding from Ireland's National Open Research Forum under the NORF Open Research Fund. https://norf.ie/funding/ https://norf.ie/orf-projects-announcement/
DOI: 10.5281/zenodo.10245116
title: National Open Access Monitor, Draft Report: Stakeholder Feedback: Response Dataset

description: This dataset contains the response data from the 'National Open Access Monitor, Draft Report: Stakeholder Feedback' Form which was open from 16th to 30th November 2023 under the National Open Access Monitor Project. A PDF reference copy of the Feedback Form is available here: https://zenodo.org/doi/10.5281/zenodo.10141988
The purpose of the form was to capture stakeholder feedback on the National Open Access Monitor, Ireland Draft Report, for actioning by OpenAIRE in the final National Open Access Monitor Report to be delivered in January 2024. The draft is an interim report, and includes reference to the initial feedback from IReL and the National Open Access Monitor Project Advisory Group.
To note: 

Responses have been pseudonymised to the level of stakeholder-group e.g. Contributor I, Research Performing Organisation I, where requested by the participant in the participant consent form: https://doi.org/10.5281/zenodo.7589770
This is the original raw data file, in csv format, as downloaded from the Online Surveys platform and subsequently pseudonymised.
-----------------------
The context for the feedback form is detailed in the National Open Access Monitor Project Plan: https://doi.org/10.5281/zenodo.7331431, the National Open Access Monitor Advisory Group Meeting Minutes, 27th October 2023: https://zenodo.org/doi/10.5281/zenodo.10105023 and the OpenAIRE National Open Access Monitor Ireland, Draft Report: https://zenodo.org/doi/10.5281/zenodo.10136295
This project is managed by IReL and has received funding from Ireland's National Open Research Forum under the NORF Open Research Fund. https://norf.ie/funding/ https://norf.ie/orf-projects-announcement/
DOI: 10.6084/m9.figshare.24080667
title: blank

description: MNPs
DOI: 10.6084/m9.figshare.24080667.v3
title: blank

description: MNPs
DOI: 10.6084/m9.figshare.24080667.v2
title: blank

description: MNPs
DOI: 10.6084/m9.figshare.24710952
title: Data from ACE10/10 and WT STZ model mice

description: Data on monthly body weight, blood glucose, blood pressure, urine volume, water consumption, food intake, urinary creatinine, urinary albumin, urinary KIM-1, eGFR, percentage of fibrosis, kidney weight, and ACE activity in the kidney when ACE10/10 and WT mice were used as STZ models.
DOI: 10.6084/m9.figshare.24710952.v1
title: Data from ACE10/10 and WT STZ model mice

description: Data on monthly body weight, blood glucose, blood pressure, urine volume, water consumption, food intake, urinary creatinine, urinary albumin, urinary KIM-1, eGFR, percentage of fibrosis, kidney weight, and ACE activity in the kidney when ACE10/10 and WT mice were used as STZ models.
DOI: 10.5281/zenodo.10245052
title: SiteMap pockets for the PDBbind dataset

description: This dataset includes the protein pockets identified by using the SITEMAP approach [SITEMAP] for the PDBbind v.2020 dataset. Only the proteins that were automatically processed by the tool, without generating any error,  are included here.
[SITEMAP] T. Halgren, "New Method for Fast and Accurate Binding- site Identification and Analysis," Chemical Biology & Drug Design, vol. 69, no. 2, pp. 146–148, Feb. 2007, doi: 10.1111/j.1747-0285.2007.00483.x.
DOI: 10.5281/zenodo.10245051
title: SiteMap pockets for the PDBbind dataset

description: This dataset includes the protein pockets identified by using the SITEMAP approach [SITEMAP] for the PDBbind v.2020 dataset. Only the proteins that were automatically processed by the tool, without generating any error,  are included here.
[SITEMAP] T. Halgren, "New Method for Fast and Accurate Binding- site Identification and Analysis," Chemical Biology & Drug Design, vol. 69, no. 2, pp. 146–148, Feb. 2007, doi: 10.1111/j.1747-0285.2007.00483.x.
DOI: 10.6084/m9.figshare.23578044
title: Data of the contribution of denitrification and anammox to nitrogen loss

description: This dataset is about the relative contribution of denitrification and anammox to nitrogen loss, and contains two sheets: "data" and "annotation".
DOI: 10.17028/rd.lboro.24649911
title: An investigation of sediment-laden meltwater plumes using in-situ and remote sensing techniques, Kongsfjorden, Svalbard

description: These data were collected across 2012, 2019, 2021 in field campaigns to the Kongsfjorden region of Svalbard and compliment aspects of G. D. Tallentire's Doctoral Thesis.Data include: surface reflectance files, Conductivity, Temperature, Depth Profiles, suspended sediment concentrations.Spreadsheets of data collected at each site and the appropriate information are also included.© the author CC-BY-NC 4.0
DOI: 10.17028/rd.lboro.24649911.v1
title: An investigation of sediment-laden meltwater plumes using in-situ and remote sensing techniques, Kongsfjorden, Svalbard

description: These data were collected across 2012, 2019, 2021 in field campaigns to the Kongsfjorden region of Svalbard and compliment aspects of G. D. Tallentire's Doctoral Thesis.Data include: surface reflectance files, Conductivity, Temperature, Depth Profiles, suspended sediment concentrations.Spreadsheets of data collected at each site and the appropriate information are also included.© the author CC-BY-NC 4.0
DOI: 10.17028/rd.lboro.24658728
title: Investigating seasonal variability in particle size at a sediment-laden meltwater plume using in-situ, laboratory and modelled datasets

description: The datasets included here support the findings in Paper 3 of G. D. Tallentire's Doctoral Thesis. Data include lab based analyses e.g. laser particle-size analysis, modelled datasets, and in-situ measurements e.g. Conductivity, Temperature, Depth Profiles.© the author CC-BY-NC 4.0
DOI: 10.17028/rd.lboro.24658728.v1
title: Investigating seasonal variability in particle size at a sediment-laden meltwater plume using in-situ, laboratory and modelled datasets - data used in draft manuscript

description: The datasets included here support the findings in Paper 3 of G. D. Tallentire's Doctoral Thesis (a draft manuscript). Data include lab based analyses e.g. laser particle-size analysis, modelled datasets, and in-situ measurements e.g. Conductivity, Temperature, Depth Profiles.© the author CC-BY-NC 4.0
DOI: 10.25345/c5st7f741
title: MassIVE MSV000093547 - IER3IP1-mutations cause microcephaly by selective inhibition of ER-Golgi transport
title: Mutations in the IER3IP1 (Immediate early response-3 interacting protein 1) gene can cause MEDS1 (microcephaly with simplified gyral pattern, epilepsy, and permanent neonatal diabetes syndrome-1), a severe disease leading to death in early childhood. The small endoplasmic reticulum-membrane protein IER3IP1 has a non-essential role in ER-Golgi transport. We here use secretome and cell-surface proteomics to show that the loss of IER3IP1 or expression of the pathogenic p.L78P-mutation causes ER retention of selective cell-surface receptors and secreted proteins involved in neuronal migration. This correlates with distension of ER membranes and increased lysosomal activity. Trafficking of the cargo receptor ERGIC53 and of KDEL-receptor 2 are impaired, the latter causing the aberrant secretion of ER-localized chaperones. In utero knock-down of IER3IP1 in brains of mouse embryos displays a morphological phenotype of newborn neurons. Taken together, our data provide hints on how the loss or mutation of a 10 kDa small ER-membrane protein can cause a fatal syndrome.
DOI: 10.34740/kaggle/dsv/7097300
title: TrainifyPro
DOI: 10.21227/ksrt-zq09
title: Power cycling test dataset (gEOL: A Gradient-based End-of-Life Criterion for Power Semiconductor Modules)

description: The dataset includes on-state saturation voltage information for eight samples under four different test conditions.  Each Excel file consists of two data columns: one for cycle numbers and the other for on-state saturation voltage. Although these data were collected during the power cycling test at the maximum junction temperature, the effect of temperature increase in the on-state voltage has been compensated. Namely, the provided on-state voltage has been unified to the corresponding to the respective 125°C or 150°C.More data details can be found in the article: Y. Zhang, Y. Zhang, and H. Wang, “gEOL: A Gradient-based end-of-Life criterion for power semiconductor modules,” IEEE Trans.Power Electron.
DOI: 10.5281/zenodo.8388976
title: Development of an advanced multiwavelength emission detector for the analytical ultracentrifuge

description: This is the raw data for the manuscript:


Development of an advanced multiwavelength emission detector for the analytical ultracentrifuge.


A readme file containing all descriptions can be found in the main folder. All data are sorted according to their appearance in the figures of the main manuscript and electronic supplementary information.


Abstract:


An advanced design of the analytical ultracentrifuge (AUC) with multiwavelength emission detection (MWE-AUC) is presented which offers outstanding performance concerning the spectral resolution and range flexibility as well as the quality of the data acquired. The excitation by a 520 nm laser is complemented with a 405 nm laser. An external spectrograph with three switchable tunable gratings permits optimisation of the spectral resolution in an order of magnitude range while keeping the spectral region broad. The new system design leads also to a significant reduction of systematic signal noise and allows the assessment and control of inner filter effects. Details regarding the very large signal dynamic range are presented, an important aspect when studying samples in a broad concentration range of up to five orders of magnitude. Custom-made mono-sector sample cells with 3 mm titanium centerpiece have been developed and are applied as default system components. Our system is validated by complementary studies on two biological systems, fluorescent bovine serum albumin and green fluorescent protein, using the commercial Optima AUC with absorbance detection for comparison. Finally, we demonstrate the capabilities of our second generation MWE-AUC with respect to multiwavelength characterisation of gold nanoclusters, which exhibit specific fluorescence depending on their structure. Overall, this work depicts an important step-stone for the future in-depth studies of size-, shape- and composition-dependent multiwavelength emission properties of colloids.
DOI: 10.5281/zenodo.8388977
title: Development of an advanced multiwavelength emission detector for the analytical ultracentrifuge

description: This is the raw data for the manuscript:


Development of an advanced multiwavelength emission detector for the analytical ultracentrifuge.


A readme file containing all descriptions can be found in the main folder. All data are sorted according to their appearance in the figures of the main manuscript and electronic supplementary information.


Abstract:


An advanced design of the analytical ultracentrifuge (AUC) with multiwavelength emission detection (MWE-AUC) is presented which offers outstanding performance concerning the spectral resolution and range flexibility as well as the quality of the data acquired. The excitation by a 520 nm laser is complemented with a 405 nm laser. An external spectrograph with three switchable tunable gratings permits optimisation of the spectral resolution in an order of magnitude range while keeping the spectral region broad. The new system design leads also to a significant reduction of systematic signal noise and allows the assessment and control of inner filter effects. Details regarding the very large signal dynamic range are presented, an important aspect when studying samples in a broad concentration range of up to five orders of magnitude. Custom-made mono-sector sample cells with 3 mm titanium centerpiece have been developed and are applied as default system components. Our system is validated by complementary studies on two biological systems, fluorescent bovine serum albumin and green fluorescent protein, using the commercial Optima AUC with absorbance detection for comparison. Finally, we demonstrate the capabilities of our second generation MWE-AUC with respect to multiwavelength characterisation of gold nanoclusters, which exhibit specific fluorescence depending on their structure. Overall, this work depicts an important step-stone for the future in-depth studies of size-, shape- and composition-dependent multiwavelength emission properties of colloids.
DOI: 10.5281/zenodo.10229381
title: Subsampled fastq from GSM7890929 and GSM7890951

description: This record contains:- 4 fastqs which are subsets of fastqs corresponding to mESC and 168h gastruloids (the whole fastqs are available at SRA).- All command lines which have been used to generate these fastqs:   - The main script is pipeline.sh   - Other files are temporary files or accessory scriptsThe subsetting is totally biased and promote cells from different clusters so the proportion are absolutely artifical!
The goal of this subsetting is to be able to use this data in training and workflow testing.
DOI: 10.5281/zenodo.10229382
title: Subsampled fastq from GSM7890929 and GSM7890951

description: This record contains:- 4 fastqs which are subsets of fastqs corresponding to mESC and 168h gastruloids (the whole fastqs are available at SRA).- All command lines which have been used to generate these fastqs:   - The main script is pipeline.sh   - Other files are temporary files or accessory scriptsThe subsetting is totally biased and promote cells from different clusters so the proportion are absolutely artifical!
The goal of this subsetting is to be able to use this data in training and workflow testing.
DOI: 10.5281/zenodo.10245163
title: Code to run the analyses of "Forest storm resilience depends on the interplay between functional composition and climate - insights from European-scale simulations" by Barrere et al. (2024).

description: Repository containing the code to run the model and statistical analyses of the paper "Forest storm resilience depends on the interplay between functional composition and climate - insights from European-scale simulations" by Julien Barrere, Björn Reineking, Maxime Jeaunatre and Georges Kunstler, accepted by Functional Ecology in 2024.
 
The code requires prior installation of the matreex R package, developped by Maxime Jeaunatre (INRAE), and of the ```targets``` package. The data folder, required to run the code, can be made available upon request to julienbarrere3@gmail.com
 
Once the packages are installed and the data folder is placer in the main folder, just run ```targets::tar_make()``` from R and the script will download the other packages required and run the analyses.
 
A version of this code is also available in the github repository