cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3819286_d8.v1
title: Additional file 3: of Understanding the response to endurance exercise using a systems biology approach: combining blood metabolomics, transcriptomics and miRNomics in horses

description: 1H NMR metabolites present in the plasma of horses following endurance exercise. (XLS 33 kb)
DOI: 10.3535/bhs-evx-1r5
title: †Holtedahlina Foerste, 1924

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/f5m-k5e-xdp
title: Ctenurellina McKamey, 2003

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20039864.v1
title: tomato data.xlsx

description: Data referring to an experiment with saline stress and tomato genotypes.
DOI: 10.3535/83c-zr8-n4w
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/djj-cgk-588
title: †Holopea J. Hall, 1847

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/168-nff-4fa
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zgg-l0l-24p
title: Cervus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.16592753.v1
title: Dataset 2

description: Dataset of over-determined Mueller polarimetry measurements of a quarter wave plate.
DOI: 10.6084/m9.figshare.6144278.v1
title: Procrustes aligned landmarks coordinates from Morphometric assessment of pterosaur jaw disparity

description: Procrustes aligned landmarks coordinates for all 46 taxa
DOI: 10.3535/120-zm0-f18
title: †Oriostoma Munier-Chalmas, 1876

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8qf-pd1-97n
title: Conochitina aff. praeproboscifera

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24503671.v1
title: Data set of study of CPAP in OSA patients

description: Data set of study entitled correlation of<b> </b>therapeutic pressure between home automatic positive airway pressure and in laboratory polysomnography manual titration in patients with obstructive sleep apnea
DOI: 10.6084/m9.figshare.6067406.v2
title: Using connectivity to identify climatic drivers of local adaptation: a response to Macdonald et al. (R-scripts)

description: R-scripts<br>BenvBintBootstrap.R : implements the expanded Macdonald's framework as proposed by Prunier and Blanchet (2018). It may be used to compute Benv and Bint beta weights, RSint structure coefficients, as well 95% CI about Benv and Bint as obtained from bootstrap.<br>BenvBintBootstrapPlot.R : used to plot outputs from the BenvBintBoostrap.R function.<br>InteractionPlot.R: used to get both a fan-representation and a surface-representation of a first-order interaction.
DOI: 10.6084/m9.figshare.7967036.v3
title: Improving psoriasis patients’ adherence to topical drugs: A systematic review

description: <b>Appendix 1</b><b><br></b><b>Appendix 2</b><b><br></b><b><br></b><br>
DOI: 10.3535/d13-7es-ye0
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qxk-w8q-nzs
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12475877.v1
title: Data Set for PLoS ONE paper

description: Data used to generate figures for PLoS ONE file. Raw data available on request.
DOI: 10.6084/m9.figshare.8798480.v1
title: Phylogenetic history of <i>Auroraceratops rugosus</i> (Ceratopsia: Ornithischia) from the Lower Cretaceous of Gansu Province, China

description: Basal neoceratopsians are a relatively diverse group of small- to medium-sized herbivorous dinosaurs from the Early to Late Cretaceous of Asia and North America. Although known for over a century, this group has only relatively recently received intense independent study, tied to the rapid increase in known diversity since 1997. <i>Auroraceratops rugosus</i> is one of these recently discovered species and is one of the best-known basal neoceratopsians, being represented by over 80 specimens, and is also the most completely represented neoceratopsian from the Early Cretaceous. A phylogenetic analysis focusing on non-ceratopsid ceratopsians examines the phylogenetic context of <i>Auroraceratops</i>. The analysis is based on a new matrix of 41 taxa and 257 characters. The results recover an <i>Auroraceratops</i>-<i>Aquilops-</i>ZPAL MgD-I/156 clade within basal Neoceratopsia that is sister to a clade composed of <i>Asiaceratops</i>, <i>Yamaceratops</i>, <i>Mosaiceratops</i>, and the larger clades Leptoceratopsidae and Coronosauria. This phylogeny recovers a monophyletic Coronosauria, Leptoceratopsidae, and Protoceratopsidae. <i>Helioceratops</i> is recovered as sister to the rest of Leptoceratopsidae, <i>Ischioceratops</i> is recovered nested within Leptoceratopsidae, and the enigmatic genus <i>Mosaiceratops</i> is recovered as a basal neoceratopsian, sister to <i>Yamaceratops</i>. <i>Yinlong,</i> and <i>Hualianceratops</i> are recovered in an expanded Chaoyangsauridae, and the genus <i>Psittacosaurus</i> is recovered as the earliest diverging lineage in Ceratopsia. <i>Ajkaceratops</i>, the only European ceratopsian, is robustly recovered as sister to the rest of Ceratopsoidea. SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Morschhauser, E. M., H. You, D. Li, and P. Dodson. 2019. Phylogenetic history of <i>Auroraceratops rugosus</i> (Ceratopsia: Ornithischia) from the Lower Cretaceous of Gansu Province, China; pp. 117–147 in Hailu You, Peter Dodson, and Eric Morschhauser (eds.), <i>Auroraceratops rugosus</i> (Ornithischia, Ceratopsia) from the Early Cretaceous of northwestern Gansu Province, China. Society of Vertebrate Paleontology Memoir 18. Journal of Vertebrate Paleontology 38(Supplement). DOI: 10.1080/02724634.2017.1509866.
DOI: 10.17632/g2g74cj4x7
title: Ichnologic and sedimentologic datasets from the Chapel Island Formation (Canada)

description: These datasets cover the ichnology and sedimentology of the Ediacaran–Cambrian Chapel Island Formation from Burin Peninsula, Newfoundland, Canada.
DOI: 10.3535/c8s-9fv-r8t
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/v35-wsm-rk2
title: Ancyrochitina sp. e

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20022009.v1
title: Usual tongue and lips position in anteroposterior and vertical growth patterns

description: PURPOSE: to study the usual tongue and lips position in anteroposterior and vertical growth patterns in children with mixed dentition. METHODS: the sample comprised 54 children, aged seven to 11 years old. The selected children were referred for radiographic evaluation and cephalometric analysis, which made it possible to obtain the SNA, SNB and AND angles (anteroposterior growth pattern) and the classification of the facial type: brachyfacial, mesofacial and dilocofacial (vertical growth pattern). The tongue and lips position was determined from the observation of cephalometric radiographs made by two speech therapists experienced in orofacial motricity. The usual tongue position was classified as in the papilla, high dorsum or on the floor of the mouth, and the usual lips position, as closed or half-open/open. In order to verify the relationship between the usual tongue and lips position with anteroposterior and vertical growth patterns, statistical tests like Analysis of variance, Student's t test, Mann-Whitney U and chi-square test at a significance level of 5% was used. RESULTS: a statistically significant relationship between the tongue position and the SNB angle was identified, children with tongue position on the floor of the mouth showed significantly lower SNB angle than children with tongue position in the papilla. SNB angle was a statistically significant lower in children with open or half open lips than children with closed lips. There was no difference between the normal position of the tongue and lips in other growth patterns anteroposterior and vertical growth. CONCLUSION: The usual position of lips and tongue were related to mandibular growth pattern and hasn't been influenced by facial type.
DOI: 10.17632/63pm8ctx22
title: Underlying data  for "A dual-function phage regulator controls the response of cohabiting phage elements via regulation of the bacterial SOS response" by Azylay et. al

description: Underlying data  (excel source file) for "A dual-function phage regulator controls the response of cohabiting phage elements via regulation of the bacterial SOS response" by Azylay et. al
DOI: 10.3535/kgb-cpk-m37
title: Minerals

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yle-xsl-m7a
title: Natrolite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1018763.v1
title: Comet Assay-final % numbers

description: The values representing percentage DNA in comet tail are listed for all measured comets. The means/standard deviations of each group were used to make the graph.
DOI: 10.6084/m9.figshare.15505770.v1
title: Raw dataset

description: Data information downloaded from http://ci.chromium.org/
DOI: 10.3535/3vp-t8l-98q
title: Lepidolite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/a4r-y2t-j4c
title: Heulandite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12333122.v1
title: Data and code for Piepenbring et al. (2020) IMA Fungus 11:13.

description: Data and code for the data analyses used in Piepenbring, Maciá-Vicente, Codjia, Glatthorn, Kirk, Meswaet, Minter, Olou, Reschke, Schmidt, Yorou (2020) Mapping mycological ignorance – checklists and diversity patterns of fungi known for West Africa. IMA Fungus 11:13.
DOI: 10.6084/m9.figshare.24303208.v1
title: Data_PLOS ONE.xlsx

description: Analytical data set for the “Exploring the nexus between physical environments, resident preferences, and usage frequency of community centers: Evidence from two Korean neighborhoods in Seoul”
DOI: 10.3535/z2q-snn-2v8
title: Hornblende

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.4588723.v1
title: ExampleData2.zip

description: Yonatan Israel, Ron Tenne, Dan Oron, and Yaron Silberberg,<br>Quantum correlation enhanced super-resolution localization using a fiber bundle camera2017, Nature Communications<br>Description: ExampleData2 - Folder containing exmaple data used to generate Fig. 3 in the manuscript.
DOI: 10.6084/m9.figshare.c.3887437_d4.v1
title: Additional file 4: Table S3. of ITRAQ-based quantitative proteomic analysis of Cynops orientalis limb regeneration

description: GO annotations of the differentially expressed proteins. (XLSX 20Â kb)
DOI: 10.3535/8rq-dth-vqr
title: Conochitina claviformis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y67-evz-6zb
title: Lazurite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21197743.v1
title: group-01-anat.tar

description: Group 01 anatomicals
DOI: 10.3535/b32-k3q-t74
title: Phillipsite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cm6-2pt-7y7
title: Sphärosiderite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/99a-94z-ng6
title: Ancyrochitina sp. sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ty7-msk-ety
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1613851.v2
title: Streptococcus pyogenes - seer visualation

description: This is output from seer to be used in phandango. Drag and drop the files in to visualise a Manhattan plot along with a reference genome and metadata. jscandy-nocovar.plot shows elements associated with country of isolation jscandy-local.plot shows elements associated with invasivenessseer.pyogenes.hits.txt.gz is the raw output from seer
DOI: 10.6084/m9.figshare.19930199.v1
title: TF-C Pretrain Epilepsy

description: - Paper: Self-Supervised Contrastive Pre-Training For Time Series via Time-Frequency Consistency - Paper link: - Github repo: https://github.com/mims-harvard/TFC-pretraining - Project website: <br> <strong>Epilepsy</strong> contains single-channel EEG measurements from 500 subjects. For each subject, the brain activity was recorded for 23.6 seconds. The dataset was then divided and shuffled (to mitigate sample-subject association) into 11,500 samples of 1 second each, sampled at 178 Hz. The raw dataset features 5 different classification labels corresponding to different status of the subject or location of measurement - eyes open, eyes closed, EEG measured in healthy brain region, EEG measured where the tumor was located, and, finally, the subject experiencing seizure episode. To emphasize the distinction between positive and negative samples in terms of epilepsy, We merge the first 4 classes into one and each time series sample has a binary label describing if the associated subject is experiencing seizure or not.
DOI: 10.3535/ez8-fwy-hpr
title: Muscovite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pad-5vb-grr
title: Ancyrochitina aff. convexa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22093121.v1
title: Plants.xlsx

description: Data of seed survival, retention time, germinability, germination time of collected seeds of five plants species (Amaranthus retroflexus, Juncus bufonius, Cyperus difformis, Polypogon monspeliensis, Solanum nigrum) after the passege throught the gut of seven seagulls. Data about control seeds are also provided when necessary.
DOI: 10.6084/m9.figshare.6682982.v1
title: Dataset for: Long-term effects and recovery of streams from acid mine drainage and evaluation of toxic metals threshold ranges for community re-assembly

description: Monitoring of benthic invertebrates in streams receiving acidic metal-contaminated water over 18-years revealed both degraded conditions and recovery along a network of downstream locations. Compared to reference streams, and over the course of clean-up remediation efforts below an abandoned open-pit sulfur mine in the central Sierra Nevada (California), improving water quality was accompanied by recovery of benthic communities at some sites. Years of high flow resulted in degraded biological status when acid mine drainage capture was incomplete and metals loading had increased with runoff. Seasonal patterns of recovery evident in fall after the summer treatment season, reverted in the following spring after overwinter periods when sources were not captured. As the metals load has been reduced, phased recovery of community structure, function, and similarity progressed toward that of reference assemblage taxonomic composition. From impacted communities dominated by relatively tolerant midges, reassembly involved an increase in density, return of long-lived taxa, an increased ratio of sensitive/tolerant forms, followed by overall diversity and community composition, and eventually large predators and grazers reappear along with mayfly, stonefly, and caddisfly richness. Threshold effect levels defined using various analysis methods showed the response range of biological indicators corresponds to EPA guidelines of predicted effects using cumulative criterion units of metals toxicity (i.e., CCU ~1). All sites have shown improved function as increased density of some or all trophic groups over time. Although recovery is progressing, year-around treatment may be necessary to fully restore biological integrity in streams nearest the mine.
DOI: 10.17632/2wwjdppm7f
title: Distinct spatiotemporal dynamics of CD8+ T cell-derived cytokines in the tumor microenvironment

description: RNASeq data accompanying the publication 'Distinct spatiotemporal dynamics of CD8+ T cell-derived cytokines in the tumor microenvironment' which will be published in the journal Cancer Cell. This repository contains preprocessed/quantified RNASeq data for a range of 'experiments' that we labelled with 4-digit identifiers. There's bulk (directories named exp_5092, exp_5892, exp_7296) and single cell (the remaining directories) RNASeq here. Meta data, in GEO submission/Excel format, describing the exact experimental conditions of each experiment, is included within each of the experiment directories. For the matched raw sequencing data, please see the mirror repository on the GEO: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE220738 Paper abstract Cells in the tumor microenvironment (TME) influence each other through secretion and sensing of soluble mediators, such as cytokines and chemokines. While signaling of interferon γ (IFNγ) and tumor necrosis factor α (TNFα) is integral to anti-tumor immune responses, our understanding of the spatiotemporal behavior of these cytokines is limited. Here, we describe a single cell transcriptome-based approach to infer which signal(s) an individual cell has received. We demonstrate that, contrary to expectations, CD8+ T cell-derived IFNγ is the dominant modifier of the TME relative to TNFα. Furthermore, we demonstrate that cell pools that show abundant IFNγ sensing are characterized by decreased expression of transforming growth factor beta (TGFβ)-induced genes, consistent with IFNγ-mediated TME remodeling. Collectively, these data provide evidence that CD8+ T cell-secreted cytokines should be categorized into local and global tissue modifiers, and describe a broadly applicable approach to dissect cytokine and chemokine modulation of the tumor microenvironment.
DOI: 10.3535/amt-kvq-klk
title: Ancyrochitina sp. sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/e2y-rwp-7k8
title: Bursachitina nestorae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.16550016.v1
title: Lack of knowledge of the epigenetic-COVID-19 relationship: a case study_DATABASE

description: Database of the paper: <b><i>Lack of knowledge of the epigenetic-COVID-19 relationship: a case study</i></b><b><i></i></b>
DOI: 10.6084/m9.figshare.28548740.v1
title: Test-retest Raw Data

description: This dataset is for a study quantifying the reproducibility of the apparent diffusion coefficient (ADC) derived from EPI-DWI scans on a 1.5T MR-linac in head and neck cancer patients. The excel file contains all of the clinical data for 39 patients, including age, sex, disease site and sub-site, pathology, laterality, T stage, N stage, M stage, overall stage, HPV status, number of primary tumors and lymph nodes, radiation therapy dose and number of fractions, and whether they had concurrent chemotherapy. It also includes outcome data for the patients, including whether they had complete response at the conclusion of radiation therapy, the follow-up time, whether they had a recurrence at last follow-up, the type and date of recurrence, and vital status at last follow-up. Next, it includes tabluated mean and median ADC values and volumes for all primary tumors and lymph nodes evaluated in our study. Each lesion was imaged at two time points; the timing of the imaging time points relative to the start of radiation therapy is included as well. While this dataset was used for a test-retest study to quantify ADC reproducibility using only the ADC values, the published dataset includes all clinical data and patient outcomes.<br>Ethics approval for this study was obtained through a retrospective data collection protocol with a waiver of informed consent (University of Texas MD Anderson Cancer Center Institutional Review Board protocol number RCR03-0800).
DOI: 10.17632/s463rbzkgb
title: Toxoplasma gondii secreted effectors co-opt host repressor complexes to inhibit necroptosis. Rosenberg and Sibley

description: MS/MS raw data and processed file in Scaffold format related to APEX2 experiments detailed in Figure 1B and Table S1 MS/MS raw data and processed file in Scaffold format related to human and Toxoplasma proteins immunoprecipitated with TgNSM-Ty detailed in Figure 3A and Table S2
DOI: 10.3535/8af-p3j-fh1
title: Glyptolepis sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qfc-s8k-ha5
title: Ancyrochitina sp. (d)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1496611.v3
title: SAS code: HDX subnational timeseries data cleaning (March 24 - August 27, 2014)

description: Purpose: comparitive study of HealthMap and HDX (WHO/MOH) ebola case and mortality estimates from March 14 - August 27, 2014. <br><br>SAS code for data cleaning for Humanitarian Data Exchange (HDX) "Sub-national time series data on Ebola cases and deaths in Guinea, Liberia, Sierra Leone, Nigeria, Senegal and Mali since March 2014" at https://data.hdx.rwlabs.org/dataset/rowca-ebola-cases
DOI: 10.6084/m9.figshare.28541390.v1
title: 9N96, 9NB1, 9NH6 maps

description: EM maps
DOI: 10.3535/7sk-kbb-hzg
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20747437.v2
title: DATA of Fuzzy_Q-learning_Interaction_Controller_Design_for_Collaborative_Robot

description: DATA of Fuzzy_Q-learning_Interaction_Controller_Design_for_Collaborative_Robot
DOI: 10.17632/2sb7d8rnb8
title: Financial Assets

description: weekly closing stock prices as well as bitcoin, oil, gold, and euro/dollar prices are extracted for the period from 2014-11-10 - 2022-09- 01.
DOI: 10.3535/0wz-rdr-kwl
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/b57-qww-lpl
title: Clathrochitina clathrata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cej-74f-eb1
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13028195.v2
title: BIOL 3250 - Lab 1.xlsx

description: In order to study the biodiversity and common species at Downsview Park in Toronto I maintained the region, duration, and tools used consistent throughout replications. Each replication was for the duration of 30 minutes aiming to have each study in the evening. Due to given restrictions of the study (limitations of participants, time, and resources) I specifically observed one forest near the walk way to ensure species are consistent with the habitat. In each replication, species found were identified through an app called iNaturalist to help ensure accurate and precise identification.
DOI: 10.6084/m9.figshare.19906867.v3
title: Gene coordinates for 2031 Saccharomyces cerevisiae genome assemblies

description: Gene coordinates for 2031 Saccharomyces cerevisiae genome assemblies
DOI: 10.3535/2yc-j43-36t
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.