cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive15395.20240510.9
title: Streptomyces mashuensis (Sawazaki et al. 1955) Witt and Stackebrandt 1991

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15396.20240916.9.1
title: Streptomyces massasporeus Shinobu and Kawato 1959

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15397.20240916.9.1
title: Streptomyces matensis Margalith et al. 1959

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15398.20240916.9.1
title: Streptomyces noboritoensis Isono et al. 1957 emend. Idris et al. 2017

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15399.20240916.9.1
title: Streptomyces melanosporofaciens Arcamone et al. 1959 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15400.20240916.9.1
title: Streptomyces michiganensis Corbaz et al. 1957

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15401.20240510.9
title: Streptomyces michiganensis Corbaz et al. 1957

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15402.20240510.9
title: Streptomyces microflavus (Krainsky 1914) Waksman and Henrici 1948 emend. Lanoot et al. 2005

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15403.20240510.9
title: Streptomyces microflavus (Krainsky 1914) Waksman and Henrici 1948 emend. Lanoot et al. 2005

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15404.20240916.9.1
title: Streptomyces microflavus (Krainsky 1914) Waksman and Henrici 1948 emend. Lanoot et al. 2005

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15405.20240510.9
title: Streptomyces microflavus (Krainsky 1914) Waksman and Henrici 1948 emend. Lanoot et al. 2005

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15406.20240510.9
title: Streptomyces microflavus (Krainsky 1914) Waksman and Henrici 1948 emend. Lanoot et al. 2005

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15407.20240510.9
title: Streptomyces microflavus (Krainsky 1914) Waksman and Henrici 1948 emend. Lanoot et al. 2005

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15408.20240510.9
title: Streptomyces microflavus (Krainsky 1914) Waksman and Henrici 1948 emend. Lanoot et al. 2005

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15409.20240510.9
title: Streptomyces microflavus (Krainsky 1914) Waksman and Henrici 1948 emend. Lanoot et al. 2005

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15410.20240510.9
title: Streptomyces minutiscleroticus (Thirumalachar 1965) Pridham 1970 emend. Lanoot et al. 2005

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15411.20240916.9.1
title: Streptomyces minutiscleroticus (Thirumalachar 1965) Pridham 1970 emend. Lanoot et al. 2005

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15412.20240916.9.1
title: Streptomyces mirabilis Ruschmann 1952

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15413.20240916.9.1
title: Kitasatospora misakiensis (Nakamura 1961) Labeda et al. 2017

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15414.20240916.9.1
title: Streptomyces misionensis Cercos et al. 1962 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15416.20240916.9.1
title: Streptomyces murinus Frommer 1959

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15417.20240510.9
title: Streptomyces murinus Frommer 1959

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15418.20240916.9.1
title: Streptomyces mutabilis (Preobrazhenskaya and Ryabova 1957) Pridham et al. 1958

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15419.20240916.9.1
title: Streptomyces naganishii Yamaguchi and Saburi 1955

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15420.20240916.9.1
title: Streptomyces narbonensis Corbaz et al. 1955

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15421.20240916.9.1
title: Streptomyces nashvillensis McVeigh and Reyes 1961

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15422.20240510.9
title: Streptomyces neyagawaensis Yamamoto et al. 1960

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15423.20240916.9.1
title: Streptomyces niger (Thirumalachar 1955) Goodfellow et al. 1986 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15424.20240510.9
title: Streptomyces niger (Thirumalachar 1955) Goodfellow et al. 1986 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15425.20240916.9.1
title: Streptomyces nitrosporeus Okami 1952

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15426.20240916.9.1
title: Streptomyces niveoruber Ettlinger et al. 1958

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive15427.20240510.9
title: Streptomyces noboritoensis Isono et al. 1957 emend. Idris et al. 2017

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.sgr354
title: Occurrence Download

description: A dataset containing 1360 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Dryophytes avivoca (Viosca, 1928))"
 ]
}

 The dataset includes 1360 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001853-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pavwt4
title: Occurrence Download

description: A dataset containing 12888 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dryoscopus gambensis (Lichtenstein, 1823)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 12888 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025330-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4qp29g
title: Occurrence Download

description: A dataset containing 36303 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Taxon occurrence data for the FungalRoot database"
 ]
}

 The dataset includes 36303 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0169395-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hkjhz5
title: Occurrence Download

description: A dataset containing 37163 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 {
 "or" : [
 "TaxonKey is Orchis palustris Jacq.",
 "TaxonKey is Juncus trifidus L.",
 "TaxonKey is Erodium tordyloides",
 "TaxonKey is Stegnogramma pozoi (Lag.) K.Iwats.",
 "TaxonKey is Odontites viscosus subsp. australis (Boiss.) Jahand. & Maire",
 "TaxonKey is Pyrola secunda L.",
 "TaxonKey is Carex paniculata subsp. calderae (A.Hansen) Lewej. & Lobin",
 "TaxonKey is Achillea pyrenaica Sibth. ex Gordon",
 "TaxonKey is Isoetes echinospora Durand",
 "TaxonKey is Chaenorhinum reyesii (C.Vicioso & Pau) Benedí",
 "TaxonKey is Platanthera obtusata subsp. oligantha (Turcz.) Hultén",
 "TaxonKey is Ranunculus auricomus L.",
 "TaxonKey is Lappula deflexa (Wahlenb.) Garcke",
 "TaxonKey is Betula pubescens Ehrh.",
 "TaxonKey is Centaurea prolongoi Boiss.",
 "TaxonKey is Viola bubanii Timb.",
 "TaxonKey is Salix repens L.",
 "TaxonKey is Salix daphnoides Vill.",
 "TaxonKey is Polygonum amphibium L.",
 "TaxonKey is Crataegus monogyna Jacq.",
 "TaxonKey is Centaurea saxicola subsp. jimenezii J.Molero Briones",
 "TaxonKey is Saxifraga longifolia var. aitanica (Pau) Pau",
 "TaxonKey is Ornithogalum reverchonii Lange ex Willk.",
 "TaxonKey is Selinum carvifolia subsp. broteri (Hoffmanns. & Link) Laínz, 1968",
 "TaxonKey is Laserpitium latifolium subsp. nevadense Mart.Lirola, Molero Mesa & Blanca",
 "TaxonKey is Solanum vespertilio subsp. vespertilio",
 "TaxonKey is Himantoglossum hircinum subsp. hircinum",
 "TaxonKey is Crepis granatensis (Willk.) G.Blanca López & M.Cueto Romero",
 "TaxonKey is Erodium foetidum (L.) L'Hér.",
 "TaxonKey is Ammodaucus nanocarpus (Beltrán-Tej.) P.Pérez & A.Velasco",
 "TaxonKey is Helianthemum linii A.Santos",
 "TaxonKey is Cytisus fontanesii Spach",
 "TaxonKey is Arctostaphylos uva-ursi subsp. crassifolia Rivas Mart.",
 "TaxonKey is Juncus pyrenaeus Timb.-Lagr. & Jaub.",
 "TaxonKey is Melampyrum nemorosum subsp. catalaunicum (Freyn) Beauverd",
 "TaxonKey is Primula acaulis (L.) L.",
 "TaxonKey is Centaurea tripontina López-Alvarado, L.Sáez, Filigh., Guardiola & Susanna",
 "TaxonKey is Dianthus arenarius subsp. bohemicus (Novák) O.Schwartz",
 "TaxonKey is Ranunculus angustifolius subsp. alismoides (Bory) Malag.",
 "TaxonKey is Narcissus pseudonarcissus subsp. confusus (Pugsley) A.Fern."
 ]
 }
 ]
}

 The dataset includes 37163 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032167-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s1mvcu
title: Occurrence Download

description: A dataset containing 28641 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Living Specimen"
 ]
 },
 {
 "or" : [
 "Country is Brazil",
 "Country is Peru",
 "Country is Colombia",
 "Country is Ecuador",
 "Country is Venezuela (Bolivarian Republic of)",
 "Country is Bolivia (Plurinational State of)",
 "Country is Argentina",
 "Country is Mexico",
 "Country is Chile"
 ]
 },
 "DatasetKey is Rapid Assessment Program (RAP) Biodiversity Survey Database",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 28641 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032167-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rbmc2h
title: Occurrence Download

description: A dataset listing the 7 species recorded in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Menyanthaceae",
 "Country is Italy",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 7 records were derived from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0179462-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.khptle
title: Occurrence Download

description: A dataset containing 932 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "TaxonKey is Diplopoda",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 932 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032167-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z2eu6k
title: Occurrence Download

description: A dataset listing the 665 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ramphastidae"
 ]
}

 The dataset's 665 records were derived from 502 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0193227-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.57xqnd
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Astragalus kirpicznikovii Grossh."
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031222-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8u2igi
title: Occurrence Download

description: A dataset containing 1578593 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Apidae"
 ]
}

 The dataset includes 1578593 records from 679 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032168-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hgkfje
title: Occurrence Download

description: A dataset containing 2919 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phoenicoparrus andinus (Philippi, 1854)"
 ]
}

 The dataset includes 2919 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184502-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2pwjtg
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Boschia grandiflora Mast."
 ]
}

 The dataset includes 68 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064338-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gaza53
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brongniartia robinioides Kunth"
 ]
}

 The dataset includes 27 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0146118-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uehryb
title: Occurrence Download

description: A dataset containing 8627 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salvia officinalis L."
 ]
}

 The dataset includes 8627 records from 270 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032168-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r4jsq2
title: Occurrence Download

description: A dataset containing 2376 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melipona beecheii Bennett, 1831"
 ]
}

 The dataset includes 2376 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007446-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cucma9
title: Occurrence Download

description: A dataset containing 598 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ailurus fulgens F.G.Cuvier, 1825"
 ]
}

 The dataset includes 598 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007448-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ymavs
title: Occurrence Download

description: A dataset containing 3648 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Amara aulica (Panzer, 1796)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 30, 46 30, 46 68, -26 68, -26 30))"
 ]
}

 The dataset includes 3648 records from 152 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007447-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3xsj9h
title: Occurrence Download

description: A dataset containing 1980 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Amara bifrons (Gyllenhal, 1810)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 30, 46 30, 46 68, -26 68, -26 30))"
 ]
}

 The dataset includes 1980 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007449-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yfvfjy
title: Occurrence Download

description: A dataset containing 5426 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Diglossa mystacalis Lafresnaye, 1846"
 ]
}

 The dataset includes 5426 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007450-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13896452
title: Data from: Inferring state-dependent diversification rates using approximate Bayesian computation (ABC)

description: State-dependent speciation and extinction (SSE) models provide a framework for quantifying whether species traits have an impact on evolutionary rates and how this shapes the variation in species richness among clades in a phylogeny. However, SSE models are becoming increasingly complex, limiting the application of likelihood-based inference methods. Approximate Bayesian computation (ABC), a likelihood-free approach, is a potentially powerful alternative for estimating parameters. One of the key challenges in using ABC is the selection of efficient summary statistics, which can greatly affect the accuracy and precision of the parameter estimates. In state-dependent diversification models, summary statistics need to capture the complex relationships between rates of diversification and species traits. Here, we develop an ABC framework to estimate state-dependent speciation, extinction and transition rates in the BiSSE (binary state dependent speciation and extinction) model. Using different sets of candidate summary statistics, we then compare the inference ability of ABC with that of using likelihood-based maximum likelihood (ML) and Markov chain Monte Carlo (MCMC) methods. Our results show the ABC algorithm can accurately estimate state-dependent diversification rates for most of the model parameter sets we explored. The inference error of the parameters associated with the species-poor state is larger with ABC than in the likelihood estimations only when the speciation rate is highly asymmetric between the two states (λ1 / λ0 = 5). Furthermore, we find that the combination of normalized lineage-through-time (nLTT) statistics and phylogenetic signal in binary traits (Fitz and Purvis’s D) constitute efficient summary statistics for the ABC method. By providing insights into the selection of suitable summary statistics, our work aims to contribute to the use of the ABC approach in the development of complex state-dependent diversification models, for which a likelihood is not available.