cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6979649.v1
title: Supplementary Material for: Isolation and Quantification of Mimivirus-Like and Marseillevirus-Like Viruses from Soil Samples in An Aboriginal <b><i>(</i></b>Orang asli<b><i>)</i></b> Village in Peninsular Malaysia

description: <b><i>Background:</i></b> The giant amoebal viruses of Mimivirus and Marseillevirus are large DNA viruses and have been documented in water, soil, and sewage samples. The trend of discovering these giant amoebal viruses has been increasing throughout Asia with Japan, India, and Saudi Arabia being the latest countries to document the presence of these viruses. To date, there have been no reports of large amoebal viruses being isolated in South East Asia. <b><i>Objective:</i></b> In this study, we aim to discover these viruses from soil samples in an aboriginal village (Serendah village) in Peninsular ­Malaysia. <b><i>Method and Results:</i></b> We successfully detected and isolated both Mimivirus-like and Marseillevirus-like viruses using <i>Acanthamoeba castellanii.</i> Phylogeny analysis identified them as Mimivirus and Marseillevirus, respectively. <b><i>Conclusion:</i></b> The ubiquitous nature of both Mimivirus and Marseillevirus is further confirmed in our study as they are detected in higher quantity in soil that is near to water vicinities in an aboriginal village in Peninsular Malaysia. However, this study is limited by our inability to investigate the impact of Mimivirus and Marseillevirus on the aboriginal villagers. More studies on the potential impact of these viruses on human health, especially on the aborigines, are warranted.
DOI: 10.6084/m9.figshare.6979652.v1
title: DEM_028488_024888

description: HiRISE DEM produced from image pair ESP_028488_1705 and ESP_024888_1705.
DOI: 10.6084/m9.figshare.6979634.v1
title: DEM_034514_034092

description: HiRISE DEM from image pair ESP_034514_1700 and ESP_034092_1700.
DOI: 10.6084/m9.figshare.6979580
title: DEM_008379_007377

description: HiRISE DEM produced from image pair PSP_008379_1700 and PSP_007377_1700.
DOI: 10.6084/m9.figshare.6979589
title: DEM_012005_012638

description: HiRISE DEM produced from image pair ESP_012005_1700 and ESP_012638_1700.
DOI: 10.6084/m9.figshare.6979589.v1
title: DEM_012005_012638

description: HiRISE DEM produced from image pair ESP_012005_1700 and ESP_012638_1700.
DOI: 10.6084/m9.figshare.6979565
title: Supplementary Material for: Adoption Patterns of Bronchoscopic Lung Volume Reduction Procedures in Germany and Predicted Procedure Volumes for Other European Countries

description: <b><i>Background:</i></b> Bronchoscopic lung volume reduction (BLVR) using valves and coils has been approved for use since 2003 and 2010, respectively. <b><i>Objective(s):</i></b> To study adoption patterns of BLVR in an early-adopting country, and to estimate potential treatment volumes in other European countries. <b><i>Methods:</i></b> Therapy- and age-specific volumes for endobronchial valve and coil procedures were obtained from German federal statistics for 2007–2016. Therapy-specific and total BLVR procedure volumes and growth were computed, and patterns in treatment age and device utilization analyzed. Patient volumes for other European countries were predicted using mean German patient volumes of the last 3 data years and age-specific population and emphysema incidences. <b><i>Results:</i></b> Over the study period, annual BLVR procedure volumes grew from 91 to 2,053 (+2,256%), reaching a peak of 2,556 procedures in 2013. Coil procedures constituted 36% of the total volume in 2016. Treatment age was stable over time, with highest procedure counts in age group 60–64 years for valves and 65–69 years for coils. A limited increase in device use per procedure was observed. For ­Germany, 1,655 newly treated BLVR patients were estimated per year, approximating about 5% of the annual newly diagnosed severe emphysema cases. Predicted volume estimates for other European countries ranged from 1 for Liechtenstein to 1,226 for France. <b><i>Conclusions:</i></b> Analysis of ­German procedure data show pronounced BLVR therapy uptake in the early years of adoption, with the more recently introduced coil therapy used in about one-third of patients. Estimated patient volumes to date constitute only a small fraction of the severe emphysema population.
DOI: 10.6084/m9.figshare.6979580.v1
title: DEM_008379_007377

description: HiRISE DEM produced from image pair PSP_008379_1700 and PSP_007377_1700.
DOI: 10.6084/m9.figshare.6979565.v1
title: Supplementary Material for: Adoption Patterns of Bronchoscopic Lung Volume Reduction Procedures in Germany and Predicted Procedure Volumes for Other European Countries

description: <b><i>Background:</i></b> Bronchoscopic lung volume reduction (BLVR) using valves and coils has been approved for use since 2003 and 2010, respectively. <b><i>Objective(s):</i></b> To study adoption patterns of BLVR in an early-adopting country, and to estimate potential treatment volumes in other European countries. <b><i>Methods:</i></b> Therapy- and age-specific volumes for endobronchial valve and coil procedures were obtained from German federal statistics for 2007–2016. Therapy-specific and total BLVR procedure volumes and growth were computed, and patterns in treatment age and device utilization analyzed. Patient volumes for other European countries were predicted using mean German patient volumes of the last 3 data years and age-specific population and emphysema incidences. <b><i>Results:</i></b> Over the study period, annual BLVR procedure volumes grew from 91 to 2,053 (+2,256%), reaching a peak of 2,556 procedures in 2013. Coil procedures constituted 36% of the total volume in 2016. Treatment age was stable over time, with highest procedure counts in age group 60–64 years for valves and 65–69 years for coils. A limited increase in device use per procedure was observed. For ­Germany, 1,655 newly treated BLVR patients were estimated per year, approximating about 5% of the annual newly diagnosed severe emphysema cases. Predicted volume estimates for other European countries ranged from 1 for Liechtenstein to 1,226 for France. <b><i>Conclusions:</i></b> Analysis of ­German procedure data show pronounced BLVR therapy uptake in the early years of adoption, with the more recently introduced coil therapy used in about one-third of patients. Estimated patient volumes to date constitute only a small fraction of the severe emphysema population.
DOI: 10.6084/m9.figshare.6979514
title: warming tolerance R code from The interaction of exposure and warming tolerance determines fish species vulnerability to warming stream temperatures

description: R code for analysis and map and figure creation for "The interaction of exposure and warming tolerance determines fish species vulnerability to warming stream temperatures" by Annika W. Walters, Caitlin P. Mandeville, and Frank J. Rahel
DOI: 10.6084/m9.figshare.6979514.v1
title: warming tolerance R code from The interaction of exposure and warming tolerance determines fish species vulnerability to warming stream temperatures

description: R code for analysis and map and figure creation for "The interaction of exposure and warming tolerance determines fish species vulnerability to warming stream temperatures" by Annika W. Walters, Caitlin P. Mandeville, and Frank J. Rahel
DOI: 10.6084/m9.figshare.6979508
title: stone-tool-gracile supp 2 from Habitual stone-tool-aided extractive foraging in white-faced capuchins, <i>Cebus capucinus</i>

description: Habitual reliance on tool use is a marked behavioural difference between wild robust (genus <i>Sapajus</i>) and gracile (genus <i>Cebus</i>) capuchin monkeys. Despite being well studied and having a rich repertoire of social and extractive foraging traditions, <i>Cebus</i> sp. rarely use tools and have never been observed using stone tools. By contrast, habitual tool use by <i>Sapajus</i> is widespread. We review theory and discuss factors which might explain these differences in patterns of tool use between <i>Cebus</i> and <i>Sapajus</i>. We then report the first case of habitual stone tool use in a gracile capuchin: a population of white-faced capuchins (<i>Cebus capucinus imitator</i>) in Coiba National Park, Panama who habitually rely on hammerstone and anvil tool use to access structurally protected food items in coastal areas including <i>Terminalia catappa</i> seeds, hermit crabs, marine snails, terrestrial crabs and other items. This behaviour has persisted on one island in Coiba National Park since at least 2004. From 1 year of camera trapping, we found that stone tool use is strongly male-biased. Of the 205 camera trap days where tool use was recorded, adult females were never observed to use stone tools, although they were frequently recorded at the sites and engaged in scrounging behaviour. Stone tool use occurs year-round in this population; over half of all identifiable individuals were observed participating. At the most active tool use site, 83.2% of days where capuchins were sighted corresponded with tool use. Capuchins inhabiting the Coiba archipelago are highly terrestrial, under decreased predation pressure and potentially experience resource limitation compared to mainland populations—three conditions considered important for the evolution of stone tool use. White-faced capuchin tool use in Coiba National Park thus offers unique opportunities to explore the ecological drivers and evolutionary underpinnings of stone tool use in a comparative within- and between-species context.
DOI: 10.6084/m9.figshare.6979508.v1
title: stone-tool-gracile supp 2 from Habitual stone-tool-aided extractive foraging in white-faced capuchins, <i>Cebus capucinus</i>

description: Habitual reliance on tool use is a marked behavioural difference between wild robust (genus <i>Sapajus</i>) and gracile (genus <i>Cebus</i>) capuchin monkeys. Despite being well studied and having a rich repertoire of social and extractive foraging traditions, <i>Cebus</i> sp. rarely use tools and have never been observed using stone tools. By contrast, habitual tool use by <i>Sapajus</i> is widespread. We review theory and discuss factors which might explain these differences in patterns of tool use between <i>Cebus</i> and <i>Sapajus</i>. We then report the first case of habitual stone tool use in a gracile capuchin: a population of white-faced capuchins (<i>Cebus capucinus imitator</i>) in Coiba National Park, Panama who habitually rely on hammerstone and anvil tool use to access structurally protected food items in coastal areas including <i>Terminalia catappa</i> seeds, hermit crabs, marine snails, terrestrial crabs and other items. This behaviour has persisted on one island in Coiba National Park since at least 2004. From 1 year of camera trapping, we found that stone tool use is strongly male-biased. Of the 205 camera trap days where tool use was recorded, adult females were never observed to use stone tools, although they were frequently recorded at the sites and engaged in scrounging behaviour. Stone tool use occurs year-round in this population; over half of all identifiable individuals were observed participating. At the most active tool use site, 83.2% of days where capuchins were sighted corresponded with tool use. Capuchins inhabiting the Coiba archipelago are highly terrestrial, under decreased predation pressure and potentially experience resource limitation compared to mainland populations—three conditions considered important for the evolution of stone tool use. White-faced capuchin tool use in Coiba National Park thus offers unique opportunities to explore the ecological drivers and evolutionary underpinnings of stone tool use in a comparative within- and between-species context.
DOI: 10.6084/m9.figshare.6979475
title: DEM_007087_007667

description: HiRISE DEM produced from image pair PSP_007087_1700 and PSP_007667_1770.
DOI: 10.6084/m9.figshare.6979427
title: Supplementary Material for: Reduced CD4 T Lymphocytes in Lymph Nodes of the Mouse Model of Autism Induced by Valproic Acid

description: <b><i>Objective:</i></b> Considering the potential role of lymphocytes in the pathophysiology of autism spectrum disorder (ASD), we aimed to evaluate possible alterations of T cell pools in the lymphoid organs of an animal model of autism induced by valproic acid (VPA). Pregnant Swiss mice received a single intraperitoneal injection of 600 mg/kg of VPA (VPA group) or saline (control group) on day 11 of gestation. Male offspring were euthanized on postnatal day 60 for removal of thy­muses, spleens, and a pool of inguinal, axillary and brachial lymph nodes. Cellularity was evaluated, and flow cytometry analysis was performed on cell suspensions incubated with the mouse antibodies anti-CD3-FITC, anti-CD4-PE, and anti-CD8-PE-Cy7. We observed that the prenatal exposure to VPA induced a reduction in the numbers of CD3+CD4+ T cells in their lymph nodes when compared to the control animals. This was specific since it was not seen in the thymus or spleen. The consistent decrease in the number of CD4+ T cells in subcutaneous lymph nodes of mice from the animal model of autism may be related to the allergic symptoms frequently observed in ASD. Further research is necessary to characterize the immunological patterns in ASD and the connection with the pathophysiology of this disorder.
DOI: 10.6084/m9.figshare.6979475.v1
title: DEM_007087_007667

description: HiRISE DEM produced from image pair PSP_007087_1700 and PSP_007667_1770.
DOI: 10.6084/m9.figshare.6979391
title: DEM_020286_020708

description: HiRISE DEM produced from image pair ESP_020286_1700 and ESP_020708_1700.
DOI: 10.6084/m9.figshare.6979385
title: DEM_017807_018875

description: HiRISE DEM produced from image pair ESP_017807_1700 and ESP_018875_1700.
DOI: 10.6084/m9.figshare.6979391.v1
title: DEM_020286_020708

description: HiRISE DEM produced from image pair ESP_020286_1700 and ESP_020708_1700.
DOI: 10.6084/m9.figshare.6979382
title: DEM_005452_005874

description: HiRISE DEM produced from image pair PSP_005452_1700 and PSP_005874_1700
DOI: 10.6084/m9.figshare.6979385.v1
title: DEM_017807_018875

description: HiRISE DEM produced from image pair ESP_017807_1700 and ESP_018875_1700.
DOI: 10.6084/m9.figshare.6979361
title: DEM_078878_008735

description: HIRISE DEM produced from image pair PSP_007878_1700 and PSP_008735_1700
DOI: 10.6084/m9.figshare.6979382.v1
title: DEM_005452_005874

description: HiRISE DEM produced from image pair PSP_005452_1700 and PSP_005874_1700
DOI: 10.6084/m9.figshare.6979358
title: Supplementary Material for: Subgrouping Somatic Symptom Disorder: An Analysis Based on the Diagnostic Criteria for Psychosomatic Research

description: Medicine
DOI: 10.6084/m9.figshare.6979361.v1
title: DEM_078878_008735

description: HIRISE DEM produced from image pair PSP_007878_1700 and PSP_008735_1700
DOI: 10.7284/116993
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1304 using a Raytheon 320 WAAS instrument system onboard the platform RV F.G. Walton Smith
DOI: 10.6084/m9.figshare.6979325
title: Supplementary Material for: A Broad Test Based on Fluorescent-Multiplex PCR for Noninvasive Prenatal Diagnosis of Cystic Fibrosis

description: <b><i>Background:</i></b> Analysis of cell-free fetal DNA in maternal plasma is very promising for early diagnosis of monogenic diseases. However, it has been limited by the need to set up patient- or disease-specific custom-made approaches. Here we propose a universal test based on fluorescent multiplex PCR and size fragment analysis for an indirect diagnosis of cystic fibrosis (CF). <b><i>Methods:</i></b> The test, based on haplotyping, includes nine intra- and extragenic short tandem repeats of the <i>CFTR</i> locus, the coamplification of p.Phe508del (the most frequent mutation in CF patients worldwide), and a specific <i>SRY</i> sequence. The assay is able to determine the inherited paternal allele. <b><i>Results:</i></b> Our simple approach was successfully applied to 30 couples and provided clear results from the maternal plasma. The mean rate of informative markers was sufficient to propose it for use in indirect diagnosis. <b><i>Conclusions:</i></b> This noninvasive prenatal diagnosis test, focused on indirect diagnosis of CF, offers many advantages over current methods: it is simple, rapid, and cost-effective. It allows for the testing of a large number of couples with high risk of CF, whatever the familial mutation of the <i>CFTR</i> gene. It provides an alternative method to reduce the number of invasive tests.
DOI: 10.6084/m9.figshare.6979325.v1
title: Supplementary Material for: A Broad Test Based on Fluorescent-Multiplex PCR for Noninvasive Prenatal Diagnosis of Cystic Fibrosis

description: <b><i>Background:</i></b> Analysis of cell-free fetal DNA in maternal plasma is very promising for early diagnosis of monogenic diseases. However, it has been limited by the need to set up patient- or disease-specific custom-made approaches. Here we propose a universal test based on fluorescent multiplex PCR and size fragment analysis for an indirect diagnosis of cystic fibrosis (CF). <b><i>Methods:</i></b> The test, based on haplotyping, includes nine intra- and extragenic short tandem repeats of the <i>CFTR</i> locus, the coamplification of p.Phe508del (the most frequent mutation in CF patients worldwide), and a specific <i>SRY</i> sequence. The assay is able to determine the inherited paternal allele. <b><i>Results:</i></b> Our simple approach was successfully applied to 30 couples and provided clear results from the maternal plasma. The mean rate of informative markers was sufficient to propose it for use in indirect diagnosis. <b><i>Conclusions:</i></b> This noninvasive prenatal diagnosis test, focused on indirect diagnosis of CF, offers many advantages over current methods: it is simple, rapid, and cost-effective. It allows for the testing of a large number of couples with high risk of CF, whatever the familial mutation of the <i>CFTR</i> gene. It provides an alternative method to reduce the number of invasive tests.
DOI: 10.7284/117165
title: Multiplexed data collected during research cruise WS1406 using a Hawaii UHDAS instrument system onboard the platform RV F.G. Walton Smith
DOI: 10.6084/m9.figshare.6979184
title: Supplementary Material for: Are Your Patients Satisfied? A Systematic Review of Treatment Satisfaction Measures in Psoriasis

description: Treatment satisfaction is paramount to the field of dermatology. Treatment dissatisfaction directly impacts patient outcomes and health care delivery. A critical need exists for standardized, validated treatment satisfaction measures in dermatology. Comprehensive evaluation of the performance of treatment satisfaction instruments used in psoriasis is lacking. We sought to critically appraise the literature on measurement properties of treatment satisfaction instruments used in psoriasis. We performed a systematic review to identify treatment satisfaction instruments used in psoriasis and corresponding studies on their measurement properties. We followed the COnsensus-based Standards for the selection of health Measurement INstruments (COSMIN) methodology to inform a best evidence synthesis. Eleven instruments were identified. Six achieved positive content validity ratings, 2 achieved positive reliability and structural validity ratings, and 1 achieved a positive internal consistency rating. The REFlective evaLuation of psoriasis Efficacy of Treatment and Severity (REFLETS) and the Spanish Satisfaction With Treatment of Psoriasis Questionnaire (SSWTPQ) had the highest overall performance. Measurement property data for treatment satisfaction instruments were found to be insufficient in identifying a single best treatment satisfaction instrument for psoriasis. Additional studies are required to better characterize the measurement properties of treatment satisfaction measures and allow for standardized assessments across psoriasis clinical trials and clinical practice.
DOI: 10.6084/m9.figshare.6979184.v1
title: Supplementary Material for: Are Your Patients Satisfied? A Systematic Review of Treatment Satisfaction Measures in Psoriasis

description: Treatment satisfaction is paramount to the field of dermatology. Treatment dissatisfaction directly impacts patient outcomes and health care delivery. A critical need exists for standardized, validated treatment satisfaction measures in dermatology. Comprehensive evaluation of the performance of treatment satisfaction instruments used in psoriasis is lacking. We sought to critically appraise the literature on measurement properties of treatment satisfaction instruments used in psoriasis. We performed a systematic review to identify treatment satisfaction instruments used in psoriasis and corresponding studies on their measurement properties. We followed the COnsensus-based Standards for the selection of health Measurement INstruments (COSMIN) methodology to inform a best evidence synthesis. Eleven instruments were identified. Six achieved positive content validity ratings, 2 achieved positive reliability and structural validity ratings, and 1 achieved a positive internal consistency rating. The REFlective evaLuation of psoriasis Efficacy of Treatment and Severity (REFLETS) and the Spanish Satisfaction With Treatment of Psoriasis Questionnaire (SSWTPQ) had the highest overall performance. Measurement property data for treatment satisfaction instruments were found to be insufficient in identifying a single best treatment satisfaction instrument for psoriasis. Additional studies are required to better characterize the measurement properties of treatment satisfaction measures and allow for standardized assessments across psoriasis clinical trials and clinical practice.
DOI: 10.7284/117061
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1408 using a Raytheon 320 WAAS instrument system onboard the platform RV F.G. Walton Smith
DOI: 10.6084/m9.figshare.6978956
title: Figure 2 data from Magma oceans as a critical stage in the tectonic development of rocky planets

description: Data necessary to reproduce the curves in Figure 2. The necessary thermodynamic data for the calculations are given in Table 1.
DOI: 10.6084/m9.figshare.6978956.v1
title: Figure 2 data from Magma oceans as a critical stage in the tectonic development of rocky planets

description: Data necessary to reproduce the curves in Figure 2. The necessary thermodynamic data for the calculations are given in Table 1.
DOI: 10.6084/m9.figshare.6978533
title: Earth Analytics Bootcamp | Homework 4 Teaching Subset

description: This is a teaching data subset that contains data for monthly total precipitation (millimeters) and average temperature (Celsius) for Boulder, CO. Data included:<br> 1. Total monthly precipitation (mm) between 1998 and 2017 (monthly-precip-mm-1998-to-2017.csv): 20 rows/records (one for each year from 1998 through 2017) and 12 columns (one for each month from January through December)<br>2. Total monthly precipitation (mm) between 1998 and 2017 (monthly-precip-mm-1998-to-2017-headers.csv) with column headers.<br>3. Average monthly temperature (Celsius) between 1998 and 2017 (monthly-temp-cel-1998-to-2017.csv): 20 rows/records (one for each year from 1998 through 2017) and 12 columns (one for each month from January through December)<br> Source: NOAA.<br>
DOI: 10.6084/m9.figshare.6978533.v2
title: Earth Analytics Bootcamp | Homework 4 Teaching Subset

description: This is a teaching data subset that contains data for monthly total precipitation (millimeters) and average temperature (Celsius) for Boulder, CO. Data included:<br> 1. Total monthly precipitation (mm) between 1998 and 2017 (monthly-precip-mm-1998-to-2017.csv): 20 rows/records (one for each year from 1998 through 2017) and 12 columns (one for each month from January through December)<br>2. Total monthly precipitation (mm) between 1998 and 2017 (monthly-precip-mm-1998-to-2017-headers.csv) with column headers.<br>3. Average monthly temperature (Celsius) between 1998 and 2017 (monthly-temp-cel-1998-to-2017.csv): 20 rows/records (one for each year from 1998 through 2017) and 12 columns (one for each month from January through December)<br> Source: NOAA.<br>