cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4088399
title: Sea salt optical modeling - output data

description: Model data for optical calculations of dried sea salt aerosol This repository provides the raw output data used for plots in a manuscript submitted to the Journal of Geophysical Research: Atmospheres. The folders contain optical data from calculations performed with the discrete dipole approximation (DDA) code ADDA (version 1.3b4) and the T-matrix code Tsym (version 6.6α) for dried sea salt aerosol particles. The output of each code was saved in the folder with the respective name. For an interpretation of the raw output, please see documentations of the respective codes [1,2]. The subdirectory adda contains results for four main types of geometries (cubes, Gaussian random cubes, convex polyhedral, and non-cubical superellipsoids). In addition, the results for these geometries an additional subfolder for calculations performed to gauge the uncertainties stemming from dipole spacing and orientation averaging. Uncertainty estimated were performed for two superellipsoids with a roundness parameter of n=e=0.0 (i.e., a cube) and a roundness parameter of n=e=0.2 (i.e., a rounded cube) respectively. The subdirectory Tsym contains results for superellipsoids. For definitions of the shapes, please see the manuscript. The naming of the folders within the subdirectories reflects the changes of the parameters investigated. Version 2 of the data set contains the files contained in Version 1, as well as, the results from additionally performed calculations and additional README files. The additionally performed calculations include further calculations related to impact of dipole spacing and number of orientations considered (in case of ADDA calculations) and an additional refractive index (in case of Tsym calculations). [1] ADDA (version 1.3b4): https://github.com/adda-team/adda/releases/tag/v1.3b4 [2] Tsym (version 5.2): https://github.com/michaelkahnert/Tsym-5.2 (The Tsym output files do not differ between versions 5.2 and 6.6α)
DOI: 10.5281/zenodo.3977897
title: Sea salt optical modeling - output data

description: Model data for optical calculations of dried sea salt aerosol This repository provides the raw output data used for plots in a manuscript submitted to the Journal of Geophysical Research: Atmospheres. The folders contain optical data from calculations performed with the discrete dipole approximation (DDA) code ADDA (version 1.3b4) and the T-matrix code Tsym (version 6.6α) for dried sea salt aerosol particles. The output of each code was saved in the folder with the respective name. For an interpretation of the raw output, please see documentations of the respective codes [1,2]. The subdirectory adda contains results for four main types of geometries (cubes, Gaussian random cubes, convex polyhedral, and non-cubical superellipsoids). In addition, the results for these geometries an additional subfolder for calculations performed to gauge the uncertainties stemming from dipole spacing and orientation averaging. Uncertainty estimated were performed for two superellipsoids with a roundness parameter of n=e=0.0 (i.e., a cube) and a roundness parameter of n=e=0.2 (i.e., a rounded cube) respectively. The subdirectory Tsym contains results for superellipsoids. For definitions of the shapes, please see the manuscript. The naming of the folders within the subdirectories reflects the changes of the parameters investigated. Version 2 of the data set contains the files contained in Version 1, as well as, the results from additionally performed calculations and additional README files. The additionally performed calculations include further calculations related to impact of dipole spacing and number of orientations considered (in case of ADDA calculations) and an additional refractive index (in case of Tsym calculations). [1] ADDA (version 1.3b4): https://github.com/adda-team/adda/releases/tag/v1.3b4 [2] Tsym (version 5.2): https://github.com/michaelkahnert/Tsym-5.2 (The Tsym output files do not differ between versions 5.2 and 6.6α)
DOI: 10.21227/wv2a-5019
title: IoT Specifications, Traceability Matrix and Test Cases based on GSM

description: The global system for mobile communications (GSM) supports mobile operators for cellular networks. Huge devices are connected to obtain services through the internet. To avoid failures when connecting IoT devices to mobile networks, GSM has provided two datasets: IoT device connection efficiency and Mobile IoT (MIoT) common test cases (TCs) and guidelines as per the IoT systems specifications. GSM produces TCs at least each year since 2015 till present. The main IoT device connection requirements were produced in 2014 (GSM 2014) and 2015 (GSM 2015) with 80 requirements and 100 TCs, whereas the MIoT dataset contains 51 requirements and 41 TCs, including the architecture for the configuration of the mobile network controls. The component diagram of this architecture shows the dependency between the components, which is used for integration testing. We have created a traceability matrix (TR) document for each dataset to present the related TCs of all requirements, and another document showing all TCs with their previous runs information, such as the description, Coverage Rate (CR), Fault Detection Rate (FDR) and Execution Time (ET) for prioritization, and other documents for TCs' attributes extracted successfully for both datasets using the IoT-CIRTF.
DOI: 10.5281/zenodo.4086170
title: Unstructured global to coastal wave modeling for the Energy Exascale Earth System Model - 2 degree WaveWatchIII configuration files

description: This dataset contains the mesh and model configuration information for a WaveWatchIII run using a 2 degree structured grid. glo_2d.bot Bottom depth file for 2 degree structured grid glo_2d.mask Mask file for 2 degree structured grid obstructions_local.glo_2d.in local obstructions file for use with UOST source term switch obstructions_shadow.glo_2d.in shadow obstructions file for use with UOST source term switch ww3_grid.inp Input file for the ww3_grid pre-processing program. This file specifies many of the model configuration settings. ww3_shel.inp Input file for the ww3_shel program.
DOI: 10.6084/m9.figshare.9948179
title: Temporal expression profiles of lncRNA and mRNA in human embryonic stem cell-derived motor neurons during differentiation

description: Background: Human embryonic stem cells (hESC) have are an invaluable research tool to study motor neuron development and disorders. However, transcriptional regulation of multiple temporal stages from ESCs to spinal motor neurons (MN) has not yet been fully elucidated. Thus, the goals of this study were to profile the time-course expression patterns of lncRNAs during MN differentiation of ESCs and to clarify the potential mechanisms of the lncRNAs that are related to MN differentiation.Methods: We utilized our previous protocol which can harvest motor neuron in more than 90% purity from hESCs. Then, differentially expressed lncRNAs (DElncRNAs) and mRNAs (DEmRNAs) during MN differentiation were identified through RNA sequencing. Bioinformatic analyses were performed to assess potential biological functions of genes. We also performed qRT-PCR to validate the DElncRNAs and DEmRNAs. Results: Total 441 lncRNAs and 1068 mRNAs at day 6, 443 and 1175 at day 12, and 338 lncRNAs and 68 mRNAs at day 18 were differentially expressed compared with day 0. Bioinformatic analyses identified that several key regulatory genes including POU5F1, TDGF1, SOX17, LEFTY2 and ZSCAN10, which involved in the regulation of embryonic development. We also predict 283 target genes of DElncRNAs, in which 6 mRNAs were differentially expressed. Significant fold changes in lncRNAs (NCAM1-AS) and mRNAs (HOXA3) were confirmed by qRT-PCR. Then, through predicted overlapped miRNA verification, we construct lncRNA NCAM1-AS-miRNA-HOXA3 network.Conclusion: This study comprehensively identified lncRNAs and mRNAs during MN differentiation of hESCs, providing the theoretical basis for further study of the regulatory role of lncRNAs in MN differentiation.<br>
DOI: 10.5517/ccdc.csd.cc1px4j8
title: CCDC 1576180: Experimental Crystal Structure Determination

description: Related Article: Kolle E. Thomas, Laura J. McCormick, Daniel Carrié, Hugo Vazquez-Lima, Gérard Simonneaux, Abhik Ghosh|2018|Inorg.Chem.|57|4270|doi:10.1021/acs.inorgchem.7b02767
DOI: 10.5517/ccdc.csd.cc1px4k9
title: CCDC 1576181: Experimental Crystal Structure Determination

description: Related Article: Kolle E. Thomas, Laura J. McCormick, Daniel Carrié, Hugo Vazquez-Lima, Gérard Simonneaux, Abhik Ghosh|2018|Inorg.Chem.|57|4270|doi:10.1021/acs.inorgchem.7b02767
DOI: 10.5517/ccdc.csd.cc1px4lb
title: CCDC 1576182: Experimental Crystal Structure Determination

description: Related Article: Kolle E. Thomas, Laura J. McCormick, Daniel Carrié, Hugo Vazquez-Lima, Gérard Simonneaux, Abhik Ghosh|2018|Inorg.Chem.|57|4270|doi:10.1021/acs.inorgchem.7b02767
DOI: 10.5517/ccdc.csd.cc1q3cls
title: CCDC 1582165: Experimental Crystal Structure Determination

description: Related Article: Kuppuswamy Arumugam, Malathy Selvachandran, Antony O Obanda, Mohamed C. Shaw, Perumalreddy Chandrasekaran, Sonya L. Caston Good, Joel T. Mague, Stephen Sproules, James Patrick Donahue|2018|Inorg.Chem.|57|4023|doi:10.1021/acs.inorgchem.8b00201
DOI: 10.5517/ccdc.csd.cc1q3cmt
title: CCDC 1582166: Experimental Crystal Structure Determination

description: Related Article: Kuppuswamy Arumugam, Malathy Selvachandran, Antony O Obanda, Mohamed C. Shaw, Perumalreddy Chandrasekaran, Sonya L. Caston Good, Joel T. Mague, Stephen Sproules, James Patrick Donahue|2018|Inorg.Chem.|57|4023|doi:10.1021/acs.inorgchem.8b00201
DOI: 10.5517/ccdc.csd.cc1q3cnv
title: CCDC 1582167: Experimental Crystal Structure Determination

description: Related Article: Kuppuswamy Arumugam, Malathy Selvachandran, Antony O Obanda, Mohamed C. Shaw, Perumalreddy Chandrasekaran, Sonya L. Caston Good, Joel T. Mague, Stephen Sproules, James Patrick Donahue|2018|Inorg.Chem.|57|4023|doi:10.1021/acs.inorgchem.8b00201
DOI: 10.5517/ccdc.csd.cc1q3cpw
title: CCDC 1582168: Experimental Crystal Structure Determination

description: Related Article: Kuppuswamy Arumugam, Malathy Selvachandran, Antony O Obanda, Mohamed C. Shaw, Perumalreddy Chandrasekaran, Sonya L. Caston Good, Joel T. Mague, Stephen Sproules, James Patrick Donahue|2018|Inorg.Chem.|57|4023|doi:10.1021/acs.inorgchem.8b00201
DOI: 10.5517/ccdc.csd.cc1q3cqx
title: CCDC 1582169: Experimental Crystal Structure Determination

description: Related Article: Kuppuswamy Arumugam, Malathy Selvachandran, Antony O Obanda, Mohamed C. Shaw, Perumalreddy Chandrasekaran, Sonya L. Caston Good, Joel T. Mague, Stephen Sproules, James Patrick Donahue|2018|Inorg.Chem.|57|4023|doi:10.1021/acs.inorgchem.8b00201
DOI: 10.5517/ccdc.csd.cc1q3cry
title: CCDC 1582170: Experimental Crystal Structure Determination

description: Related Article: Kuppuswamy Arumugam, Malathy Selvachandran, Antony O Obanda, Mohamed C. Shaw, Perumalreddy Chandrasekaran, Sonya L. Caston Good, Joel T. Mague, Stephen Sproules, James Patrick Donahue|2018|Inorg.Chem.|57|4023|doi:10.1021/acs.inorgchem.8b00201
DOI: 10.5517/ccdc.csd.cc1q3ct0
title: CCDC 1582172: Experimental Crystal Structure Determination

description: Related Article: Kuppuswamy Arumugam, Malathy Selvachandran, Antony O Obanda, Mohamed C. Shaw, Perumalreddy Chandrasekaran, Sonya L. Caston Good, Joel T. Mague, Stephen Sproules, James Patrick Donahue|2018|Inorg.Chem.|57|4023|doi:10.1021/acs.inorgchem.8b00201
DOI: 10.5517/ccdc.csd.cc1q3cv1
title: CCDC 1582173: Experimental Crystal Structure Determination

description: Related Article: Kuppuswamy Arumugam, Malathy Selvachandran, Antony O Obanda, Mohamed C. Shaw, Perumalreddy Chandrasekaran, Sonya L. Caston Good, Joel T. Mague, Stephen Sproules, James Patrick Donahue|2018|Inorg.Chem.|57|4023|doi:10.1021/acs.inorgchem.8b00201
DOI: 10.5517/ccdc.csd.cc1q3cw2
title: CCDC 1582174: Experimental Crystal Structure Determination

description: Related Article: Kuppuswamy Arumugam, Malathy Selvachandran, Antony O Obanda, Mohamed C. Shaw, Perumalreddy Chandrasekaran, Sonya L. Caston Good, Joel T. Mague, Stephen Sproules, James Patrick Donahue|2018|Inorg.Chem.|57|4023|doi:10.1021/acs.inorgchem.8b00201
DOI: 10.5517/ccdc.csd.cc1q3cx3
title: CCDC 1582175: Experimental Crystal Structure Determination

description: Related Article: Kuppuswamy Arumugam, Malathy Selvachandran, Antony O Obanda, Mohamed C. Shaw, Perumalreddy Chandrasekaran, Sonya L. Caston Good, Joel T. Mague, Stephen Sproules, James Patrick Donahue|2018|Inorg.Chem.|57|4023|doi:10.1021/acs.inorgchem.8b00201
DOI: 10.5517/ccdc.csd.cc1q3cy4
title: CCDC 1582176: Experimental Crystal Structure Determination

description: Related Article: Kuppuswamy Arumugam, Malathy Selvachandran, Antony O Obanda, Mohamed C. Shaw, Perumalreddy Chandrasekaran, Sonya L. Caston Good, Joel T. Mague, Stephen Sproules, James Patrick Donahue|2018|Inorg.Chem.|57|4023|doi:10.1021/acs.inorgchem.8b00201
DOI: 10.5281/zenodo.4088439
title: Tabular summary of HR analytics dataset.

description: This is a fictional data set created by IBM data scientists. Tries to uncover the factors that lead to employee attrition and explore important questions such as ‘show me a breakdown of distance from home by job role and attrition’ or ‘compare average monthly income by education and attrition’
DOI: 10.5281/zenodo.4088438
title: Tabular summary of HR analytics dataset.

description: This is a fictional data set created by IBM data scientists. Tries to uncover the factors that lead to employee attrition and explore important questions such as ‘show me a breakdown of distance from home by job role and attrition’ or ‘compare average monthly income by education and attrition’
DOI: 10.6084/m9.figshare.12961952.v1
title: Supplementary Figure 1. Microscope setup and excitation parameters.

description: Raw image data in ome.tiff format, supporting supplementary figure 1 of the manuscript Intravital Deep-Tumor Single-Beam 2-, 3- and 4-Photon Microscopy.
DOI: 10.5066/p9gh084x
title: Data on Produced Water Quality and Quantities from Hydraulically Fractured Williston Basin Oil Wells

description: This dataset contains compositional data on 17 produced water samples from hydraulically fractured unconventional oil wells completed in the Middle Bakken and Three Forks Formations. The oil wells are located in five different wellfields across the Williston Basin. Specific gravity, conductivity, temperature, pH and oxidation-reduction potential for each sample was measured in the field. Ions (B, Li, Cl, Na, Br), biomarkers (Pristane /n-C17 and Phytane /n-C18), glycol ether compounds, major ions, as well as radium (Ra-228/Ra-226), boron (&amp;#948;11B), oxygen (&amp;#948;18O) and hydrogen (&amp;#948;2H) isotopic ratios were analyzed in the lab. Well profiles are provided to increase understanding of the produced waters compositions in the context of the depth of the well, age of the well, the time since hydraulic fracturing, the amounts of water injected and produced since hydraulic fracturing, the hydraulic fracturing treatment fluid types injected.
DOI: 10.6084/m9.figshare.12961823.v1
title: Figure 2. Thresholds of functional phototoxicity at 1300 nm and 1650 nm excitation in tumors in vivo.

description: Raw image data in ome.tiff format, supporting figure 2 of the manuscript Intravital Deep-Tumor Single-Beam 2-, 3- and 4-Photon Microscopy.
DOI: 10.5281/zenodo.4064115
title: The Effects of Asymmetric Dark Matter on Stellar Evolution I: Spin-Dependent Scattering - Supporting Data

description: Supporting code and data for the paper: <em>The Effects of Asymmetric Dark Matter on Stellar Evolution I: Spin-Dependent Scattering</em> Raen (2020) <strong>Supporting code</strong> includes `run_star_extras.f`, inlist templates, and our dark matter module (to be used in conjunction with MESA: Modules for Experiments in Stellar Astrophysics). The full source code used in the production of this paper is available at github.com/troyraen/DM-in-Stars in the Raen2020 branch. (The master branch is intended for use by those wishing to use our module to explore DM effects beyond the scope of this paper.) We used MESA version 12115, and MESA SDK version 20190830. <strong>Model data</strong> includes MESA history and profile data for the models highlighted in the paper (\(1.0\ \mathrm{M}_\odot\) and \(3.5\ \mathrm{M}_\odot\) models with \(\Gamma_B = 0\) (no dark matter), \(\Gamma_B = 10^4\), and \(\Gamma_B = 10^6\)). The specific inlists used to generate the models are also included. Additional data will be shared on reasonable request to the paper's corresponding author.
DOI: 10.5281/zenodo.4064114
title: The Effects of Asymmetric Dark Matter on Stellar Evolution I: Spin-Dependent Scattering - Supporting Data

description: Supporting code and data for the paper: <em>The Effects of Asymmetric Dark Matter on Stellar Evolution I: Spin-Dependent Scattering</em> Raen (2020) <strong>Supporting code</strong> includes `run_star_extras.f`, inlist templates, and our dark matter module (to be used in conjunction with MESA: Modules for Experiments in Stellar Astrophysics). The full source code used in the production of this paper is available at github.com/troyraen/DM-in-Stars in the Raen2020 branch. (The master branch is intended for use by those wishing to use our module to explore DM effects beyond the scope of this paper.) We used MESA version 12115, and MESA SDK version 20190830. <strong>Model data</strong> includes MESA history and profile data for the models highlighted in the paper (\(1.0\ \mathrm{M}_\odot\) and \(3.5\ \mathrm{M}_\odot\) models with \(\Gamma_B = 0\) (no dark matter), \(\Gamma_B = 10^4\), and \(\Gamma_B = 10^6\)). The specific inlists used to generate the models are also included. Additional data will be shared on reasonable request to the paper's corresponding author.
DOI: 10.6084/m9.figshare.13089536
title: R0184_20170830a_videos

description: Rat 0184, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.5281/zenodo.4088443
title: Unstructured global to coastal wave modeling for the Energy Exascale Earth System Model - 1/2 degree WaveWatchIII configuration files

description: This dataset contains the mesh and model configuration information for a WaveWatchIII run using a 1/2 degree structured grid. glo_30m.bot Bottom depth file for a 1/2 degree structured grid glo_30m.mask Mask file for a 1/2 degree structured grid obstructions_local.glo_30m.in local obstructions file for use with UOST source term switch obstructions_shadow.glo_30m.in shadow obstructions file for use with UOST source term switch ww3_grid.inp Input file for the ww3_grid pre-processing program. This file specifies many of the model configuration settings. ww3_shel.inp Input file for the ww3_shel program.
DOI: 10.5281/zenodo.4088519
title: Unstructured global to coastal wave modeling for the Energy Exascale Earth System Model - unstructured (2 degree to 1/2 degree) WaveWatchIII configuration files

description: This dataset contains the mesh and model configuration information for a WaveWatchIII run using a global ustructured grid. mesh.msh Unstructured mesh file in gmsh format. The unstructured mesh has 2 degree resolution globally with 1/2 degree resolution around the U.S. coastlines. The transition in resolution occurs at 4000m depth with a 10% resolution grading. obstructions_local.glo_unst.in local obstructions file for use with UOST source term switch obstructions_shadow.glo_unst.in shadow obstructions file for use with UOST source term switch ww3_grid.inp Input file for the ww3_grid pre-processing program. This file specifies many of the model configuration settings. ww3_shel.inp Input file for the ww3_shel program.
DOI: 10.6084/m9.figshare.12961829.v1
title: Figure 3. Tissue penetration and resolution of 2-, 3- and 4-photon microscopy in tumors in vivo.

description: Raw image data in ome.tiff format, supporting figure 3 of the manuscript Intravital Deep-Tumor Single-Beam 2-, 3- and 4-Photon Microscopy.
DOI: 10.7284/130688
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AT40-03 using a Hawaii UHDAS instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/130697
title: Expendable Probe data collected during research cruise AT40-03 using a Sippican MK12 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/130695
title: Fluorometer data collected during research cruise AT40-03 using a WET Labs WETStar instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/130687
title: GNSS (Global Navigation Satellite System) data collected during research cruise AT40-03 using a C&C C-Nav 3050 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/130690
title: Gravimeter data collected during research cruise AT40-03 using a Bell BGM-3 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/130689
title: Meteorological Station data collected during research cruise AT40-03 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/130692
title: Meteorological Station data collected during research cruise AT40-03 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/130696
title: Multibeam Echosounder data collected during research cruise AT40-03 using a Kongsberg EM122 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/130698
title: Multibeam Echosounder data collected during research cruise AT40-03 using a Kongsberg EM122 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/130691
title: Radiometer data collected during research cruise AT40-03 using a Eppley RAD instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/130694
title: Water Temperature data collected during research cruise AT40-03 using a Sea-Bird SBE-48 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/130693
title: TSG (Thermosalinograph) data collected during research cruise AT40-03 using a Sea-Bird SBE-45 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.13079337
title: Supplementary Table 1 from Release from cell cycle arrest with Cdk4/6 inhibitors generates highly synchronized cell cycle progression in human cell culture

description: Cell lines used in this study
DOI: 10.6084/m9.figshare.13079337.v1
title: Supplementary Table 1 from Release from cell cycle arrest with Cdk4/6 inhibitors generates highly synchronized cell cycle progression in human cell culture

description: Cell lines used in this study