cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1072689.09fu
title: SH1072689.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1072690.09fu
title: SH1072690.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1072691.09fu
title: SH1072691.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1072692.09fu
title: SH1072692.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.16901113
title: Additional file 23 of A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells

description: Additional file 23: Table S10. Excel file with description of synthetic DNA fragments (oligos and gene blocks).
DOI: 10.6084/m9.figshare.16901131
title: Additional file 5 of A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells

description: Additional file 5: Table S3. Excel file with data from the analysis of temperature dependence of the S2R+ cell transcriptome by 3′ RNA-Seq.
DOI: 10.6084/m9.figshare.19522823
title: Additional file 3 of Genome-scale transcriptomic insights into the gene co-expression network of seed abortion in triploid Siraitia grosvenorii

description: Additional file 3: Table S3. The identifed DEGs between consecutive stages (15DAF vs 10DAF).
DOI: 10.6084/m9.figshare.19522838
title: Additional file 8 of Genome-scale transcriptomic insights into the gene co-expression network of seed abortion in triploid Siraitia grosvenorii

description: Additional file 8: Table S8. GO functional enrichment of DEGs (15DAF vs 10DAF).
DOI: 10.6084/m9.figshare.19522826.v1
title: Additional file 4 of Genome-scale transcriptomic insights into the gene co-expression network of seed abortion in triploid Siraitia grosvenorii

description: Additional file 4: Table S4. The identifed DEGs between consecutive stages (20DAF vs 15DAF).
DOI: 10.6084/m9.figshare.16901137.v1
title: Additional file 7 of A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells

description: Additional file 7: Table S5. Excel file with data from DNA microarray analysis of temperature dependence of the HB10 cell transcriptome (M4).
DOI: 10.6084/m9.figshare.19522841.v1
title: Additional file 9 of Genome-scale transcriptomic insights into the gene co-expression network of seed abortion in triploid Siraitia grosvenorii

description: Additional file 9: Table S9. GO functional enrichment of DEGs (20DAF vs 15DAF).
DOI: 10.6084/m9.figshare.16901134
title: Additional file 6 of A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells

description: Additional file 6: Table S4. Excel file with data from the analysis of temperature dependence of the transcriptome of adult male flies by 3′ RNA-Seq.
DOI: 10.6084/m9.figshare.21087543.v1
title: Additional file 1 of Transcriptional regulation of proanthocyanidin biosynthesis pathway genes and transcription factors in Indigofera stachyodes Lindl. roots

description: Additional file 1.
DOI: 10.6084/m9.figshare.16901140
title: Additional file 8 of A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells

description: Additional file 8: Table S6. Excel file with 3′ RNA-Seq count data from the analysis of temperature effects on the use of alternative polyadenylation sites in S2R+ cells (worksheet 1) and adult male flies (worksheet 2).
DOI: 10.6084/m9.figshare.18998718
title: miR-140-3p attenuated the tumorigenesis of multiple myeloma via attenuating BZW2

description: Among B-cell lymphoma, multiple myeloma (MM) is an incurable malignancy. miR-140-3p was known to be an inhibitor in malignant tumors. However, the function of miR-140-3p in MM remains unclear. qRT-PCR was performed to determine the expressions of miR-140-3p and BZW2 mRNA. The protein level of BZW2 was determined by the western blot. Cell viability or cell apoptosis was detected by the MTT assay or flow cytometry, respectively. Binding between miR-140-3p and BZW2 was validated using the dual luciferase assay. Xenograft model was applied to verify the results of <i>in vitro</i> study. The level of miR-140-3p was significantly downregulated in MM. Overpexression of miR-140-3p impaired the proliferation of MM cell lines and induced apoptosis in MM cells. miR-140-3p was validated to target BZW2 and inhibit the expression of BZW2. BZW2 was involved in the regulation of miR-140-3p on MM cell vitality and apoptosis. In vivo study revealed that miR-140-3p impeded tumorigenesis of MM cell line in nude mice. Our present study revealed that miR-140-3p served as a suppressor in MM by negatively regulating BZW2. Thus, miR-140-3p could act as a new target for treating MM.
DOI: 10.6084/m9.figshare.16900998.v1
title: Additional file 9 of Genome-wide identification, classification, and expression analysis of the JmjC domain-containing histone demethylase gene family in birch

description: Additional file 9: Table S9. The spearman correlation between the number of BpJMJ genes cis-acting elements and their expression in different tissues.
DOI: 10.6084/m9.figshare.16900992
title: Additional file 7 of Genome-wide identification, classification, and expression analysis of the JmjC domain-containing histone demethylase gene family in birch

description: Additional file 7: Table S7. Expression levels (TPM) of JHDM genes in different birch tissues.
DOI: 10.6084/m9.figshare.16900960
title: Additional file 15 of Plastid phylogenomic insights into relationships of all flowering plant families

description: Additional file 15: Table S2. Summary of all recognized 433 families, 68 orders, and more inclusive clades for flowering plants, with numbers of known genera and species.
DOI: 10.6084/m9.figshare.17425871
title: Additional file 2 of In-depth assembly of organ and development dissected Picrorhiza kurroa proteome map using mass spectrometry

description: Additional file 2: Table S2. List of protein accessions with their calculated relative abundance (iFOT) in each of the organ proteomes.
DOI: 10.6084/m9.figshare.16900963
title: Additional file 1 of Plastid phylogenomic insights into relationships of all flowering plant families

description: Additional file 1: Table S1. Species sampled in this study. The 4792 individuals sampled including 86 newly sequenced plastomes, involving 4498 angiosperm species and 162 gymnosperm species.
DOI: 10.6084/m9.figshare.14279714
title: DESIGN OF ELECTRONIC CONTROL GOVERNOR FOR A SINGLE CYLINDER GASOLINE ENGINE BASED ON AN INTELLIGENT SENSING ALGORITHM

description: ABSTRACT At present, most large machinery and vehicle engines are electronically controlled but their electronic control systems are too expensive to be popularised and applied in small gasoline engines with relatively low prices. Therefore, small gasoline engines still use mechanical speed regulators. Mechanical speed regulators not only have the defects of inertia lag, friction resistance, inherent speed regulation and the like, but also have the disadvantage that dynamic performance and steady performance cannot be combined, which is not suitable for the increasingly improved speed regulation performance of gasoline engines. This paper describes the design of an electronically controlled intelligent governor for small gasoline engines. Starting from a low cost, it adopts the idea of “replacing part of the hardware with an intelligent sensing algorithm” and proposes an intelligent sensing algorithm scheme. It combines the “coarse tuning” of MAP and the “fine tuning” of adaptive expert PID. The system is proved experimentally and it not only overcomes the inherent defects of a mechanical governor and realises programmable speed regulation, but it also obtains good dynamic and steady performance, improves the power output of the engine, relieves the trouble of engine travelling and improves the freedom of carburetor matching.
DOI: 10.6084/m9.figshare.14279790.v1
title: EFFECT OF THE MIST MICRO-SPRAY TIME ON PHOTOSYNTHETIC SPATIAL HETEROGENEITY OF GRAPE CANOPY

description: ABSTRACT In grape, high temperatures and low humidity prolong midday depression of foliar photosynthesis and dramatically reduce fruit yield. In this study, we explored the effects of various mist micro-spray treatments on grape photosynthesis at a test site in Shanshan County (N, 42.91°; E, 90.30°), Turpan, Xinjiang, China. We tested four different mist micro-spray durations including 1 h (WP1), 2 h (WP2), 3 h (WP3), and 0 h (CK). WP1, WP2, and WP3 affected canopy air temperature and humidity for 5 h, 7 h, and 9 h, respectively. At 12:30, WP1, WP2, and WP3 had the strongest cooling effect and altered temperature by −5.12 °C, −5.09 °C, and −5.17 °C respectively. The relative chlorophyll content was higher in the upper than the lower canopy leaves. There were no differences in the same leaf layers across treatments. The net photosynthesis and transpiration rates and stomatal conductance were higher for the upper than the lower canopy leaves. Compared with CK, the mist micro-spray treatments mitigated “midday depression” in the upper leaves and eliminated it altogether in the lower leaves. Mist micro-spray for 1 h d-1 most effectively improved grape leaf photosynthesis. The findings of the present study lay an empirical foundation for improving grape leaf photosynthesis and fruit yield.
DOI: 10.6084/m9.figshare.17425880
title: Additional file 5 of In-depth assembly of organ and development dissected Picrorhiza kurroa proteome map using mass spectrometry

description: Additional file 5: Table S5. Proteome-wide analysis of protein domains and screened RNA-binding domains (RBDs) using Pfam database. A list of P. kurroa putative RNA-binding proteins (RBPs) and their motif enrichment using DREME software (E-value &lt; 0.05).
DOI: 10.24403/jp.1330396
title: Jahn, I.: Grundzüge der Biologiegeschichte. - (UTB für Wissenschaft. Uni-Taschenbücher 1534). - Jena : Gustav Fischer Verlag, 1990 / [rezensiert von] H. Manitz
DOI: 10.24403/jp.1330397
title: Jahn, R. & Schönfelder, P.: Exkursionsflora für Kreta. - Stuttgart : Verlag Eugen Ulmer, 1995 / [rezensiert von] K.-F. Günther
DOI: 10.6084/m9.figshare.17425880.v1
title: Additional file 5 of In-depth assembly of organ and development dissected Picrorhiza kurroa proteome map using mass spectrometry

description: Additional file 5: Table S5. Proteome-wide analysis of protein domains and screened RNA-binding domains (RBDs) using Pfam database. A list of P. kurroa putative RNA-binding proteins (RBPs) and their motif enrichment using DREME software (E-value &lt; 0.05).
DOI: 10.6084/m9.figshare.14280017.v1
title: Ammonium/nitrate ratio affects the growth and glucosinolates content of pakchoi

description: ABSTRACT Nitrogen (N) strongly affects plant growth. However, little is known about the effects of the ammonium/nitrate ratio on pakchoi (Brassica rapa), especially its glucosinolates (GSs) contents which are involved in plant defense and many of them benefit to human health. The aim of this study was to evaluate the effects of a constant N supply (8 mM) but with five ammonium/nitrate ratios (namely 0/8 mM, 2/6 mM, 4/4 mM, 6/2 mM and 8/0 mM) on the growth of pakchoi in a hydroponic system in 2 years. In both years, a higher biomass (dry weight) was in the 4/4 and 2/6 ammonium/nitrate treatments (2.3 and 2.2-fold compared to 8/0, respectively), with no significant difference in biomass between these two treatments. The biomass then decreased with increasing proportions of ammonium in the N supply from more than 10 g/pot to below 5 g/pot. The N and sulfur contents were strongly affected in the sole nitrate or ammonium treatments, as were the contents of chlorophyll, lutein, and β-carotene. Most of the individual glucosinolates (GSs) detected in pakchoi showed the highest concentrations in the sole ammonium treatment. The ammonium/nitrate ratio also affected the types of GSs. The highest proportion of indolyl GSs and the lowest proportion of aromatic GSs were in the sole ammonium treatment. We concluded that a high ammonium level decreases the biomass but increases the GSs concentrations in pakchoi. Further studies are required to explore the difference in GSs metabolism among plants supplied with different ammonium/nitrate ratios.
DOI: 10.6084/m9.figshare.19522689
title: Additional file 2 of A molecular approach integrating genomic and DNA methylation profiling for tissue of origin identification in lung-specific cancer of unknown primary

description: Additional file 2: Table S1. Treatment regimens and survival outcomes for each of the 16 lung-specific CUP patients analyzed in this study.
DOI: 10.6084/m9.figshare.19522802
title: Additional file 10 of Genome-scale transcriptomic insights into the gene co-expression network of seed abortion in triploid Siraitia grosvenorii

description: Additional file 10: Table S10. GO functional enrichment of DEGs (25DAF vs 20DAF).
DOI: 10.6084/m9.figshare.19522820
title: Additional file 2 of Genome-scale transcriptomic insights into the gene co-expression network of seed abortion in triploid Siraitia grosvenorii

description: Additional file 2: Table S2. The identifed DEGs between consecutive stages (10DAF vs 5DAF).
DOI: 10.6084/m9.figshare.20047471.v1
title: Chemical variations of loess from the Chinese Loess Plateau and its implications

description: The Chinese Loess Plateau (CLP) is the largest loess deposit on Earth with expansive surface-exposed source rocks of varying origins, ages, and history. Here, we present abundances of elements on representative loess and palaeosol samples from seven classic sections of the CLP. Most elements, including soluble elements (e.g. Rb and Cs), show significant correlations with La or Al<sub>2</sub>O<sub>3</sub>. These correlations indicate that these elements are hosted or absorbed in particle minerals during weathering, transport, and deposition (e.g. mica, K-feldspar, and clay minerals). These new observations allow the use of La/X (‘X’ being the element of interest) and the estimated La abundance of 31 ppm in the model upper continental crust (UCC) to estimate the abundances of other elements. The results show higher Cs (Cs = 6.7 ± 1.2 ppm), lower transition metals, Ba, and Ga. Given the high CaO and presence of carbonate in UCC rocks of both vast western China (the primary source for the CLP) and eastern China, we propose that these updates on the element abundances represent a refined model for the carbonate-bearing UCC.
DOI: 10.6084/m9.figshare.19522841
title: Additional file 9 of Genome-scale transcriptomic insights into the gene co-expression network of seed abortion in triploid Siraitia grosvenorii

description: Additional file 9: Table S9. GO functional enrichment of DEGs (20DAF vs 15DAF).
DOI: 10.6084/m9.figshare.17425871.v1
title: Additional file 2 of In-depth assembly of organ and development dissected Picrorhiza kurroa proteome map using mass spectrometry

description: Additional file 2: Table S2. List of protein accessions with their calculated relative abundance (iFOT) in each of the organ proteomes.
DOI: 10.6084/m9.figshare.17425877
title: Additional file 4 of In-depth assembly of organ and development dissected Picrorhiza kurroa proteome map using mass spectrometry

description: Additional file 4: Table S4. Five protein clusters were generated by hierarchical clustering analysis (silhouette index &gt; 0.66) comprised of protein accessions, their description along with calculated Z-scores in each of the organ.
DOI: 10.6084/m9.figshare.16893153
title: Additional file 4 of Monophyletic blowflies revealed by phylogenomics

description: Additional file 4. Ancestral construction of adult metallic color of blowflies.
DOI: 10.6084/m9.figshare.19522811
title: Additional file 13 of Genome-scale transcriptomic insights into the gene co-expression network of seed abortion in triploid Siraitia grosvenorii

description: Additional file 13: Table S13. qRT-PCR primers used in this study.
DOI: 10.6084/m9.figshare.19522817
title: Additional file 1 of Genome-scale transcriptomic insights into the gene co-expression network of seed abortion in triploid Siraitia grosvenorii

description: Additional file 1: Table S1. The expression level of all the annotated genes in S. grosvenorii genome.
DOI: 10.6084/m9.figshare.19522817.v1
title: Additional file 1 of Genome-scale transcriptomic insights into the gene co-expression network of seed abortion in triploid Siraitia grosvenorii

description: Additional file 1: Table S1. The expression level of all the annotated genes in S. grosvenorii genome.
DOI: 10.6084/m9.figshare.19522820.v1
title: Additional file 2 of Genome-scale transcriptomic insights into the gene co-expression network of seed abortion in triploid Siraitia grosvenorii

description: Additional file 2: Table S2. The identifed DEGs between consecutive stages (10DAF vs 5DAF).
DOI: 10.6084/m9.figshare.17425877.v1
title: Additional file 4 of In-depth assembly of organ and development dissected Picrorhiza kurroa proteome map using mass spectrometry

description: Additional file 4: Table S4. Five protein clusters were generated by hierarchical clustering analysis (silhouette index &gt; 0.66) comprised of protein accessions, their description along with calculated Z-scores in each of the organ.
DOI: 10.6084/m9.figshare.19522829
title: Additional file 5 of Genome-scale transcriptomic insights into the gene co-expression network of seed abortion in triploid Siraitia grosvenorii

description: Additional file 5: Table S5. The identifed DEGs between consecutive stages (25DAF vs 20DAF).
DOI: 10.6084/m9.figshare.18998718.v1
title: miR-140-3p attenuated the tumorigenesis of multiple myeloma via attenuating BZW2

description: Among B-cell lymphoma, multiple myeloma (MM) is an incurable malignancy. miR-140-3p was known to be an inhibitor in malignant tumors. However, the function of miR-140-3p in MM remains unclear. qRT-PCR was performed to determine the expressions of miR-140-3p and BZW2 mRNA. The protein level of BZW2 was determined by the western blot. Cell viability or cell apoptosis was detected by the MTT assay or flow cytometry, respectively. Binding between miR-140-3p and BZW2 was validated using the dual luciferase assay. Xenograft model was applied to verify the results of <i>in vitro</i> study. The level of miR-140-3p was significantly downregulated in MM. Overpexression of miR-140-3p impaired the proliferation of MM cell lines and induced apoptosis in MM cells. miR-140-3p was validated to target BZW2 and inhibit the expression of BZW2. BZW2 was involved in the regulation of miR-140-3p on MM cell vitality and apoptosis. In vivo study revealed that miR-140-3p impeded tumorigenesis of MM cell line in nude mice. Our present study revealed that miR-140-3p served as a suppressor in MM by negatively regulating BZW2. Thus, miR-140-3p could act as a new target for treating MM.
DOI: 10.6084/m9.figshare.19522832.v1
title: Additional file 6 of Genome-scale transcriptomic insights into the gene co-expression network of seed abortion in triploid Siraitia grosvenorii

description: Additional file 6: Table S6. The identifed DEGs between consecutive stages (30DAF vs 25DAF).
DOI: 10.6084/m9.figshare.19522835
title: Additional file 7 of Genome-scale transcriptomic insights into the gene co-expression network of seed abortion in triploid Siraitia grosvenorii

description: Additional file 7: Table S7. GO functional enrichment of DEGs (10DAF vs 5DAF).
DOI: 10.6084/m9.figshare.19522838.v1
title: Additional file 8 of Genome-scale transcriptomic insights into the gene co-expression network of seed abortion in triploid Siraitia grosvenorii

description: Additional file 8: Table S8. GO functional enrichment of DEGs (15DAF vs 10DAF).
DOI: 10.6084/m9.figshare.20047008
title: Additional file 3 of Phyllosphere bacterial and fungal communities vary with host species identity, plant traits and seasonality in a subtropical forest

description: Additional file 3: Table S3. Pearson correlation coefficients of the relationships between biodiversity metrics and plant traits.