cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/92p69brtzf
title: Polarimetry data from article: Study of the optical rotatory of potassium titanyl phosphate using the advanced dual-wavelength polarimetric method

description: This data is a supplement to the article "Study of the optical rotatory of potassium titanyl phosphate using the advanced dual-wavelength polarimetric method". The abstract is reproduced below. 
A dual-wavelength high-accuracy universal polarimeter was applied to the circular birefringence and optical activity measurement in potassium titanyl phosphate (KTP) nonlinear crystal. The experimental setup used two single-mode He-Ne lasers with close wavelengths of 594 and 633 nm as light sources. Measurement has been carried out for two crystal settings in directions of a 45-degree relative angle to the [100] and [010] crystallographic axes. Multiple light reflections inside the crystal sample were considered when processing the results of the polarimetric measurements. The results have been analysed using the optical transmission function for the polariser-sample-analyser system, and 2D intensity contour maps made it possible to determine the phase parameters, systematic errors, and eigenwaves ellipticity. It was found that the gyration tensor component of the KTP crystal is equal to g12 = 1.4 ⋅10−5 which in terms of optical rotatory power corresponds to the very small magnitude of the rotation value of 2.3 deg/mm.
DOI: 10.17632/vrpmrvbnd4
title: ZFX mediates non-canonical oncogenic functions of the androgen receptor splice variant 7 (AR-V7) in castrate-resistant prostate cancer. A study of Cai L et al
DOI: 10.6084/m9.figshare.153907.v5
title: Paleoclimate insolation calculation

description: R package to compute Incoming Solar Radiation (insolation) for paleoclimate studies. Features three solutions: BER78, BER90 and LA04. Computes daily-mean, season-averaged and annual means for all latitudes. Licenced under MIT licence. Refer to original papers when using specific insolation solutions.
DOI: 10.6084/m9.figshare.22193119.v3
title: Driving behaviour multimodal human factors raw dataset

description: Driving behaviour multimodal human factors preprocessed dataset, including EEG, EMG, ECG and GSR.
DOI: 10.6084/m9.figshare.25541227.v1
title: Glacial and proglacial lake methane fluxes.xlsx

description: Ebullition, diffusion and plant-mediated methane fluxes to the atmosphere from glacial lakes, proglacial lakes, isostatic rebound ponds and proglacial fluvial ponds in southcentral Alaska and western Greenland.
DOI: 10.17632/sj4ng58c4r
title: Data for: Assessing Economic Consequences of Improved Animal Welfare in Swedish Cattle Fattening Operations using a Stochastic Partial Budgeting Approach

description: Data used for stochastic partial budgeting using Microsoft Excel and @Risk.
DOI: 10.17632/ymf3nx8zp6
title: Data_Feeling and sacrifice_How eco emotions inform decisions to live with less to protect the natural environment.sav

description: Data_Feeling and sacrifice_How eco emotions inform decisions to live with less to protect the natural environment
DOI: 10.6084/m9.figshare.27156099.v1
title: Supplemental Files for the article "Backtranslation Effects on Static and Contextual Word Embeddings for Topic Classification"

description: This supplementary files were used in a study investigating the impact of backtranslation on topic classification, focusing on two types of word embeddings: static word vectors (FastText) and contextual word embeddings (RoBERTa). The primary aim of the study was to evaluate whether backtranslation enhances classification performance for both embedding types across multiple languages, including Slovak. The dataset includes both original and backtranslated data, which were utilized to train various classifiers such as Logistic Regression, Support Vector Machine (SVM), Random Forest, and RNN-LSTM.
DOI: 10.17632/cdcgbsrrhc
title: 2. Simple Membrane Unit in Mathematica Linked to CHEMCAD

description: CHEMCAD is a suite of software for the simulation of chemical processes and the design of equipment. Mathematica is an entirely different type of software, providing powerful computer algebra tools and mathematical functions for the theoretical or numerical solution of advanced mathematical problems. This data set provides instructions with an example for connecting CHEMCAD to Mathematica through Excel. The example is a simple well-mixed membrane calculation with a fully specified feed stream split by the membrane into retentate and permeate streams. Files and instructions for connecting the software using Mathematica Link for Excel are included. The software prerequisites are working, licensed copies of Mathematica, CHEMCAD, and Mathematica Link for Excel. The results are interesting because a wide range of advanced design and simulation equations can be posed in Mathematica and run live in CHEMCAD.
DOI: 10.17632/gnhz6g9vmh
title: Cuidado de enfermería-desenlaces en UCI adultos

description: La base de datos incorpora variables sociodemográficas y de salud de pacientes adultos de UCI relacionadas con eventos adversos, mortalidad y tiempo de estancia, presenta la probabilidad de muerte al inicio de la hospitalización según SAPS-3 y algunos indicadores de la carga de trabajo de enfermería como el TISS-28.
DOI: 10.17632/k6h4fp832b
title: property price data

description: This data is property price data in Surabaya from October 2018 to October 2019 which is collected from marketplace website.  The data consist of price (Rp), bedroom (unit), bathroom (unit), building area (m2), land area (m2), location coordinate (latitude, longitude)
DOI: 10.17632/zhzbts26p5
title: A-Three: A general optical model code especially suited to heavy-ion calculations

description: Title of program: A-THREE Catalogue Id: ABII_v1_0 Nature of problem The non-relativistic radial Schrodinger equation with complex potential is solved partial wave by partial wave to obtain phase shifts, from which total (reaction) cross sections, elastic scattering angular distributions and polarization angular distributions are obtained. Optionally, radial wave functions may be retained. The complex optical potential may take a large number of forms and may, as well, have the parts of the potential read in (from other calculations) or calculated by user supplie ... Versions of this program held in the CPC repository in Mendeley Data ABII_v1_0; A-THREE; 10.1016/0010-4655(78)90091-7 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.6084/m9.figshare.28227416.v1
title: Replication Package: Towards a Common Understanding of Cryptographic Agility

description: This is the replication package required for the peer review of our submitted work.
DOI: 10.6084/m9.figshare.6845525.v1
title: 16S Mouse data

description: Assembled sequence data for use in Mothur pipeline for mouse hypertension data
DOI: 10.17632/gv33tgvt5f
title: Ridgecrest, CA seismic velocity models

description: This data set contains models of seismic (compressional- and shear-wave) velocity structure for the region surrounding the 2019 Ridgecrest, CA earthquake pair. These models were derived via traveltime tomography with the aftershock catalog that accompanies this data set (doi: 10.17632/x8v5wkbj6r.1). The models are discretized on a regular grid in geographical coordinates and shared in a single CSV file. The first three columns indicate the spatial position of the model parameters, the second set of three columns indicate the compressional- (or P-) and shear- (or S-) wave velocities (Vp and Vs , respectively) in kilometers per second and their ratio (Vp/Vs), and the last three columns indicate the uncertainties associated with each of these values. White_et_al_2021__Rigecrest_2019_velocity.csv fields ============================================ - latitude: Node latitude in degrees - longitude: Node longitude in degrees - depth: Node depth (below sea level) in kilometers - Vp: P-wave velocity in kilometers per second - Vs: S-wave velocity in kilometers per second - VpVs: Ratio of P- and S-wave velocities (unitless) - sigma_Vp: P-wave velocity uncertainty in kilometers per second - sigma_Vs: S-wave velocity uncertainty in kilometers per second - sigma_VpVs: Vp/Vs ratio uncertainty (unitless)
DOI: 10.17632/432gx3rp3r
title: Differences in the Tumor Immunity-related Gene Expression Profile Between Acral lentiginous and Non-acral Melanoma

description: Supplement table Ⅰ.  Clinicopathological features of patients in our study

Supplement table Ⅱ. Materials and methods of gene expression analysis

Supplement table Ⅲ. Lists of differentially expressed genes in acral lentiginous melanoma compared to non-acral cutaneous melanoma

Supplement table Ⅳ. Undirected and directed global significance scores of 18 pathways 

Supplement figure 1. Tumor immune-related gene expression profile of acral lentiginous melanoma (ALM) and non-acral cutaneous melanoma (NACM). Heatmap of unsupervised hierarchical clustering of total genes, MA plot, and principal component analysis plot showed that tumor immune-related genes were differently expressed between ALM and NACM, but ALM and NACM were not classified into separate clusters. 

Supplement figure 2. Volcano plots of each pathway that was significantly different in gene set enrichment analysis between acral lentiginous melanoma (ALM) and non-acral cutaneous melanoma (NACM). Whole genes are described as gray dots, while genes within the selected gene set are highlighted in yellow squares. 

Supplement figure 3. Immune cell profile analysis of acral lentiginous melanoma (ALM) and non-acral cutaneous melanoma (NACM). Pairwise box plots of immune-cell abundance scores obtained from the NanoString nSolver program and total score of tumor-infiltrating lymphocytes (TILs) according to melanoma subtype revealed that neutrophils were more abundant while total TILs were lowered in ALM.

Supplement figure 4. Immune cell profile analysis using Cell-type Identification By Estimating Relative Subsets Of RNA Transcripts (CIBERSORT) of acral lentiginous melanoma (ALM) and non-acral cutaneous melanoma (NACM). Pairwise box plots of immune-cell scores revealed resting dendritic cells, neutrophils, and M2 macrophage subtypes were abundant in ALM than NACM.

Supplement figure 5. Immunohistochemistry of acral lentiginous melanoma (ALM) and non-acral cutaneous melanoma (NACM). Representative histograms of ALM and positivity ratio of CXCL-5 /ENA-78, Cartilage oligometric matrix protein (COMP), LAG-3, and CD163 according to the melanoma subtype. (CXCL-5 /ENA-78, ×200; COMP, ×200; LAG3, ×100, CD163, ×200).
ns: not significant

Supplement figure 6. Gene expression profiles of normal human skin dataset (gene expression omnibus (GEO) accession number GSE5591, platform number GPL4213) according to anatomical site (acral versus non-acral). Volcano plot, adjusted p-value histogram, uniform manifold approximation and projection (UMAP), and MA plot revealed that there was no statistically significant difference (adjusted p-value <0.05) between acral and non-acral sites.
DOI: 10.17632/g9fyx69sbt
title: Data For: Gender Inequality in Literacy Status and Households Economic Well-Being in Burkina Faso: A Semiparametric Bi-variate Sample Selection Modeling Approach

description: These R formatted datasets are extracted from the 2009 and 2014 versions of the National Survey on Household Living Conditions (EICVM, 2009 and 2014) administered by the National Institute for Statistics and demography (INSD) in Burkina Faso. Collected each over a period of 12 months, the 2009 version contains 8,404 observations, while the 2014 survey has 10411 observations.
DOI: 10.6084/m9.figshare.24619716.v1
title: 重度抑郁症与胃溃疡之间的双向关联：孟德尔随机化研究

description: <b>抽象</b><b>重要性</b>大量新出现的证据表明度抑郁症 （MDD） 与胃溃疡 （GU） 之间存在关联。然而，尽管MDD和GUs之间开始了从属关系，但明确的因果相互作用和轨迹仍然处于模糊状态，因此MDD和GUs之间的反向相关性有待明确的解释。<b>目的</b>研究 MDD 和 GU 之间的双向关联，采用遗传知情方法来评估合理的因果推论。<b>设计、设置和参与者</b>双样本孟德尔随机化MR），这些患者来自芬兰 （finngen） 和综合流行病学单位 （IEU） 数据库。该研究还利用了关于被诊断患有MDD的个体（n = 807,553）的最大可用非重叠全基因组关联研究（GWAS）作为遗传工具。上述GWAS是在大量不同的观察队列中进行的，包括Finngen，IEU OpenGWAS项目，以及精神病学基因组学联盟（PGC）（特别是MDD）中的其他参与研究，重点是欧洲血统的成年人。随后使用逆方差加权 （IVW） 荟萃分析技术合成从每种遗传仪器获得的 MR 估计值。替代方法，包括但不限于加权中位数、MR Egger 和 MR-多效性残差和异常值 （PRESSO） 技术，也与各种灵敏度分析相结合，以仔细评估水平多效性并有效去除异常值。<b>结果</b>源自 IVW 方法的 MR 研究结果表明，MDD 显着增加了感染 GU [比值比 （OR） = 1.23,95% 置信区间 （CI） 1.08-1.41，P <i>P</i> = 2.33 × 10-3]。此外，其他方法（如加权中位数）的 MR 结果,，与 IVW 方法产生了一致的结果。此外，敏感性分析显示，结局是有弹性的，没有观察到多效性或异质性。相反，反向 MR 分析表明 GU 不会增加 MDD 风险的发生率。<b>结论</b>这项 MR 研究证实了 MDD 与 患 GU 风险升高之间存在重要联系。因此，在MDD患者的对症治疗中，应纳入相应的GU保护预防措施， 这 以规避GU的进展。
DOI: 10.6084/m9.figshare.28730453.v1
title: <b>Soluble alpha klotho - impact of biological variables and reference intervals for adults- Supplemental File</b>

description: We confirmed good linearity for samples with soluble alpha klotho concentrations below 3000 pg/mL (recovery rate (% mean (range)): 96 (92-107)) but found that samples with concentrations exceeding 3000 pg/mL must be diluted at least 1:4 to allow further dilutions in a linear manner. In the majority of samples from healthy subjects, soluble alpha klotho remains above the limit of quantification even when diluted 1:4. Pre-analytical stability was excellent, with no significant differences in concentrations observed between samples stored at room temperature for up to 120 h before (whole blood), for up to 72 h after centrifugation (serum), submitted to up to 4 freeze/thaw cycles, or after long-term storage at -20<sup>o</sup>C (31 months). Soluble alpha klotho also did not differ between serum and EDTA plasma taken in parallel from the same individual. Soluble alpha klotho concentrations correlated mainly with age and estimated glomerular filtration rate, and might be higher in females. However, the impact of other biological variables is negligible. Our detailed reference intervals for soluble alpha klotho from a large population-based sample might facilitate its use in clinical practice.
DOI: 10.17632/7p25n8gwj2
title: Conserved patterns of transcriptional dysregulation, heterogeneity and cell states in clear cell kidney cancer

description: Raw images of Immunoblots published in "Conserved patterns of transcriptional dysregulation, heterogeneity and cell states in clear cell kidney cancer" by Lombardi O, Li R, Jabbar F, Evans H, Halim S, Lima JDCC, Browning L, Byrne H, Choudhry H, Ratcliffe PJ & Mole DR. Cell Reports 2024.
DOI: 10.17632/35rdb5j3rv
title: Data for: The Silurian icehouse to greenhouse climatic transition recorded in the epicontinental Baltica Sea
DOI: 10.6084/m9.figshare.8244746.v1
title: Posterior samples from hierarchical Models 1 and 2 for the study associated with the paper "The latency of a visual evoked potential tracks the onset of decision making"

description: Posterior samples from hierarchical Models 1 and 2 described in the following paper:<br><br>Nunez, M. D., Gosai, A., Vandekerckhove, J., & Srinivasan, R. (2019). The latency of a visual evoked potential tracks the onset of decision making. <i>NeuroImage</i>, <i>197</i>, 93-108.
DOI: 10.17632/sp3wvbtnmh
title: OpenMP Fortran programs for solving the time-dependent dipolar Gross-Pitaevskii equation

description: In this paper we present Open Multi-Processing (OpenMP) Fortran 90/95 versions of previously published numerical programs for solving the dipolar Gross-Pitaevskii (GP) equation including the contact interaction in one, two and three spatial dimensions. The atoms are considered to be polarized along the z axis and we consider different cases, e.g., stationary and non-stationary solutions of the GP equation for a dipolar Bose-Einstein condensate (BEC) in one dimension (along x and z axes), two dimensions (in x-y and x-z planes), and three dimensions. The algorithm used is the split-step semi-implicit Crank-Nicolson scheme for imaginary- and real-time propagation to obtain stationary states and BEC dynamics, respectively, as in the previous version (Kishor Kumar et al., 2015 [3]). These OpenMP versions have significantly reduced execution time in multicore processors.

The previous version of this program (AEWL_v1_0) may be found at https://doi.org/10.1016/j.cpc.2015.03.024.
DOI: 10.6084/m9.figshare.21276675.v1
title: OTU tables, Metadata, Taxonomy files

description: OTU tables, Metadata and Taxonomy files of 16S rRNA gene and fungal ITS1 region used in the analysis <br>
DOI: 10.6084/m9.figshare.24845010.v1
title: Hindcast simulation from a coupled ocean physics and biogeochemistry model from 1979 to 2022

description: Hindcast simulation from a coupled ocean physics and biogeochemistry model from 1979 to 2022, related manuscript is submitted to a journal about geoscience disciplines
DOI: 10.6084/m9.figshare.7461938.v1
title: Vitamin D deficiency

description: Vitamin D deficiency dataset using machine learning approaches
DOI: 10.17632/4833bhfjv3
title: Nanomag Dataset: Labyrinth Spin Structures

description: These datasets are composed of various labyrinth spin configurations simulated on a 128*128 square grid lattice system with Heisenberg spin model.
DOI: 10.17632/6n65z4sv9c
title: METTL3 regulates viral m6A RNA modification and host cell innate immune responses during SARS-CoV-2 infection by Li et al.

description: Table S1 SARS-CoV-2 Me-RIP-Seq Peaks Summary Table S2 SARS-CoV-2 Control METTL3 KD MeRIP-Seq Peaks Summary Table S3 shM3 Vs NTC RNA Seq Table S4 Primers used
DOI: 10.17632/ccnzpxng54
title: Data set used in the replication of an IR based test case prioritization techniques (IRCOV)

description: This data set represents the results of our replication experiment to replicate a Test Case Prioritization Based on Information Retrieval Concepts. 
The technique was initially proposed by Jung-Hyun Kwon, In-Young Ko (Dept. Of Comp. Science
KAIST, Daejeon, South Korea), Gregg Rothermel (Dept. of Comp. Science Univ. of Nebraska-Lincoln, NE), and Matt Staats (Univ. of Luxembourg, Luxembourg).  
All details about the experiment are documented in the paper titled "Lessons learned from replicating an information-retrieval based test case prioritization technique." 
The folder named CommonsCLI contains the results of successful replication of the test case prioritization technique based on coverage and information retrieval concepts. 
The folder contains both results from internal steps and the final results. The folder named LogsXmlSecurity presents the issues that we faced during the replication of this project. 
The folder named Log4J presents the partial replication results because due to less coverage of the tests cases, we could not replicate the underlying technique. 
And the Folder CommonsEmail also includes partial results, as we could not build the programs because of inappropriate mutants.
DOI: 10.6084/m9.figshare.28204292.v1
title: Data

description: The <i>Faifi</i> variety, classified as an Arabic dialect (albeit with controversy), is chiefly spoken in southwestern Saudi Arabia by a diminishing number of autochthonous Faifi people. This dialect has been the subject of both synchronic and diachronic description and analysis in a few published studies and a small number of unpublished works. While some studies have focused on very narrow aspects of Faifi, such as the phoneme /st/, others have taken a broad scope and attempted either to address an entire linguistic level, such as syntax or phonology or to touch upon different linguistic levels in one study. To date, however, no study has acoustically documented the dialect. Thus, the current paper intends to complement previous studies and further elaborate on the distinction between two Faifi subvarieties that existing scholarship seems to have overlooked: Upper and Lower Faifi. We detail an acoustic description of Upper Faifi consonants and vowels and their interaction and provide auditory materials to support our acoustic analysis to contribute a milestone description of this variety and to help future researchers obtain access to this minority of speakers
DOI: 10.6084/m9.figshare.28585943.v8
title: Abundance and diversity of haemosporidian parasites dramatically differ among closely related vireo species

description: Wiley et al., 2025 (in prep) Abundance and diversity of haemosporidian parasites dramatically differ among closely related vireo species.In this study, we use pectoral tissues and whole blood samples of three closely related, elevational replacement species of vireo to characterize infection dynamics of avian Haemosporidians across their summer breeding sites in the American Southwest. We asked: What is the distribution, prevalence, and pathogen loads (parasitemia) experienced across these closely related species (Bell’s vireo: n = 20, gray vireo: n = 170, and plumbeous vireo: n = 58) during their breeding season in the southwestern U.S.? And what factors (i.e. host traits: species; environmental factors: temperature, precipitation; geographic features: latitude, elevation) are correlate with infection status and parasitemia?Data are archived on FigShare: https://doi.org/10.6084/m9.figshare.28585943DATASET All birds were sampled during summer months (May–August) spanning the years 1995–2019 across 27 unique sites in New Mexico and a single site in Utah, under appropriate federal, state, and local permits. Majority of samples were accompanied by vouchered specimens that were archived at the Museum of Southwestern Biology (MSB), University of New Mexico (UNM), except in the case of gray vireos that were released after sample collection. Samples used in this study represent 248 wild birds of three closely related vireo species (Bell’s vireo: n = 20, gray vireo: n = 170, and plumbeous vireo: n = 58). We screened samples via nested PCR amplification of the cytochrome b region for Haemoproteus and Plasmodium parasites and positive infections were quantified via microscopy following the protocol described in Valkiūnas (2005). Parasitemia represents the % of parasites counted across 10,000 red blood cells screened.We identified and compared haplotypes to published records stored in the public databases GenBank (National Center for Biotechnology Information, US National Library of Medicine) and MalAvi (Bensch et al., 2009). Haplotypes that differed by one or more base pairs (~0.2% sequence divergence) from published sequences on GenBank or MalAvi were considered novel and named following MalAvi conventions. All sequences are uploaded to GenBank and MalAvi under [Accession Number #####] & [Accession Number #####].Additionally, we documented aspects of sampling locality (i.e. latitude, longitude, elevation), and environmental factors known to impact pathogen prevalence and distribution (i.e. WORLDCLIM 19 bioclimatic variables to do with temperature and precipitation).Analysis code is available on GitHub: https://github.com/dlfwiley/Vireo-Malaria-Project. Majority of data, except in the case of gray vireos released after sample collection, are linked to vouchered host and parasite specimens, housed at the Museum of Southwestern Biology (MSB) at the University of New Mexico, USA. Specimen records are accessible in the Artcos database (https://arctos.database.museum/).