cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0132178.10fu
title: SH0132178.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive144026.20251217.10
title: Campylobacter lari

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0132179.10fu
title: SH0132179.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive144027.20241212.9.2
title: Sphingobacterium thalpophilum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive144027.20251217.10
title: Sphingobacterium thalpophilum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0132180.10fu
title: SH0132180.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive144028.20250331.9.3
title: Chryseobacterium balustinum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive144028.20251217.10
title: Chryseobacterium balustinum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive144029.20241212.9.2
title: Lactobacillus rhamnosus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0132181.10fu
title: SH0132181.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive144029.20251217.10
title: Lactobacillus rhamnosus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive144030.20230509.8.1
title: Clostridium tertium

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.ufp8sw
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gaura L.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 71 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0171254-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vnp4fx
title: Occurrence Download

description: A dataset containing 94346 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arnica montana L."
 ]
}

 The dataset includes 94346 records from 294 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0261164-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kqtajz
title: Occurrence Download

description: A dataset containing 3378 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-180.55177 58.77800,-154.88770 58.77800,-154.88770 69.03923,-180.55177 69.03923,-180.55177 58.77800))",
 "HasCoordinate is true",
 "TaxonKey is Erignathus barbatus (Erxleben, 1777)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3378 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015808-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z1subd
title: Occurrence Download

description: A dataset containing 3243 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leopardus pardalis (Linnaeus, 1758)"
 ]
}

 The dataset includes 3243 records from 151 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002570-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ktat7h
title: Occurrence Download

description: A dataset containing 575 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Matteuccia Tod.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 575 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0171257-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.36d2dw
title: Occurrence Download

description: A dataset containing 420 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dinizia excelsa Ducke"
 ]
}

 The dataset includes 420 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0266782-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8phyqc
title: Occurrence Download

description: A dataset containing 644 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Opuntia streptacantha Lem."
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 644 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015809-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bf9jem
title: Occurrence Download

description: A dataset containing 659 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Okenia hypogaea Schltdl. & Cham."
 ]
}

 The dataset includes 659 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196562-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5a5duq
title: Occurrence Download

description: A dataset containing 182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Depth 0.0-100.0m",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Strongylocentrotus droebachiensis (O.F.Müller, 1776)",
 "Year 1988-2021"
 ]
}

 The dataset includes 182 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0192471-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fjmsn8
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-97.31689 22.63184,-99.20654 22.10449,-97.40479 18.58887,-94.32861 17.75391,-97.31689 22.63184))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Melipona beecheii Bennett, 1831"
 ]
}

 The dataset includes 49 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0264280-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qraq0j
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-22.86182 27.37288,-13.29913 27.37288,-13.29913 31.19631,-22.86182 31.19631,-22.86182 27.37288))",
 "HasCoordinate is true",
 "TaxonKey is Andrenidae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 73 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015809-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nehm6j
title: Occurrence Download

description: A dataset containing 44815 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pelophylax ridibundus (Pallas, 1771)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 44815 records from 1335 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049781-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60656/52b864511e7146e7
title: Custom collection of ice water content data from Lindenberg between 1 Jan and 31 Dec 2024
DOI: 10.5281/zenodo.15090392
title: Code and Data for Policy Tree Optimization

description: This repository contains all the code corresponding to methods and figure generation in the paper below:

Adaptation triggers and indicator interpretability for dynamic reoptimization of reservoir control policies under climate changeAny updates can be found in the GitHub repository : https://github.com/ssaiveena/policyTree



Directories


Data: Contains input data for analysis used in the study.

Main_optimization: This folder contains function codes called by main_reopt_perf.py and supporting function files. This includes the framework for an “outer loop” adaptation policy that establishes indicator thresholds for reoptimization based on recently observed data, and an “inner loop” control policy that undergoes reoptimization according to these thresholds. This directory also has main_reopt_perf_reevaluate.py that is used to reevaluate teh policies for the training and testing set to determine the policy actions triggered over time based on feature variables describing changes in hydrology and demand.

Figures: Directory containing python scripts to generate Figures 3-9 of the manuscript and data used plotting the figures.

PostProcessing: Directory containing python scripts on SHAP analysis and sensitivity analysis.



Data preparation and model run




The scenario data can be downloaded here. Unzip and move the folders into data/cmip5 and data/lulc.



The CMIP5 climate scenarios are from USBR and contain daily reservoir inflows in cfs.

The LULC scenarios are from multiple models and have been converted to water demand multipliers as described in Cohen et al. 2021



The solutions of the reoptimization (Reopt_50 in the manuscript) can be obtained from this repository
DOI: 10.15468/dl.tw9u2a
title: Occurrence Download

description: A dataset containing 4951 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is one of (Brazil, Argentina, Paraguay)",
 "TaxonKey is Euphonia cyanocephala (Vieillot, 1819)"
 ]
}

 The dataset includes 4951 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002297-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4m4he6
title: Occurrence Download

description: A dataset containing 3772 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Brazil, Argentina, Paraguay)",
 "TaxonKey is Euphonia xanthogaster Sundevall, 1834"
 ]
}

 The dataset includes 3772 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002300-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q63cq9
title: Occurrence Download

description: A dataset listing the 2368402 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Animalia"
 ]
}

 The dataset's 2368402 records were derived from 53185 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002285-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fipwvh
title: Occurrence Download

description: A dataset containing 33005 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Unknown evidence"
 ]
 },
 "TaxonKey is Myodes rutilus (Pallas, 1779)"
 ]
}

 The dataset includes 33005 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023793-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c9laxy
title: Occurrence Download

description: A dataset containing 22019332 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is South Africa"
 ]
}

 The dataset includes 22019332 records from 1112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023794-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.45uthw
title: Occurrence Download

description: A dataset containing 665 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hipposideros ruber (Noack, 1893)",
 "Year 1975-2021"
 ]
}

 The dataset includes 665 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0182486-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.65br4a
title: Occurrence Download

description: A dataset containing 194 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Juncus secundus P.Beauv. ex Poir.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 194 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0165047-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kk4lhv
title: Occurrence Download

description: A dataset listing the 2369 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anthribus E.L.Geoffroy, 1762"
 ]
}

 The dataset's 2369 records were derived from 137 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023795-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.icx3a2
title: Occurrence Download

description: A dataset containing 2116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Brassica tournefortii Gouan"
 ]
}

 The dataset includes 2116 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023804-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nehmmw
title: Occurrence Download

description: A dataset containing 15040 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Fungal literature records database of the Northern West Siberia (Russia)"
 ]
}

 The dataset includes 15040 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040735-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ap4lgt
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-165.12891 6.45505,-145.72266 6.45505,-145.72266 30.75127,-165.12891 30.75127,-165.12891 6.45505))",
 "HasCoordinate is true",
 "TaxonKey is Labordia triflora Hillebr.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023797-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qp8j5s
title: Occurrence Download

description: A dataset containing 719 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Juncus ensifolius Wikstr.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 719 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0165030-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.um9jns
title: Occurrence Download

description: A dataset containing 641 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Wyeomyia pseudopecten Dyar & Knab, 1906"
 ]
}

 The dataset includes 641 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023798-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2qas7c
title: Occurrence Download

description: A dataset containing 287 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cassia moschata Kunth"
 ]
}

 The dataset includes 287 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0189932-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vdtmft
title: Occurrence Download

description: A dataset containing 1810 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lespedeza virginica (L.) Britton"
 ]
}

 The dataset includes 1810 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023799-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zd6nb5
title: Occurrence Download

description: A dataset containing 171 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Vouacapoua americana Aubl."
 ]
}

 The dataset includes 171 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0189971-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.