cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/whndb3g9jp.1
title: Machine learning technology predicts postoperative ileus after laparoscopic radical colorectal cancer resection combined with lobaplatin hyperthermic intraperitoneal chemotherapy(English last code)

description: Machine learning technology predicts postoperative ileus after laparoscopic radical colorectal cancer resection combined with lobaplatin hyperthermic intraperitoneal chemotherapy(English last code)
DOI: 10.17632/nvws234bd3.1
title: SLC25A1 in AML

description: RNA Seq data for Kasumi-1
DOI: 10.17632/wgz2z9wm7n.1
title: Dataset: Initiation and internal structure of temperate coral reef community over the past 7.3 kyr in Kushimoto, mainland of Japan (Version 2)

description: The dataset is composed of the following data:
(1) A Photograph of the drilled core (WK-Ku-Gw-C3). 
(3) A description of the drilled core (WK-Ku-Gw-C3). 
(3) A list of 193 tropical cyclones that passed within a 300 km radius of the survey site from 1951 to 2023.
DOI: 10.17632/g9426nx8vw.1
title: Opioid Online Supplemental Data

description: Online Supplemental Figures and Tables for Opioid Manuscript
DOI: 10.17632/pmjnxypdgb.1
title: Horses, Serfs, Slaves, and Transitions Data

description: Data that go with paper of same name.
DOI: 10.17632/zpbmxdszfd.1
title: JAAD chromoblastomycosis

description: sup figure
DOI: 10.17632/rds35m4yty.1
title: Assessment of Myocardial Microcirculation and Its Relationship with Cardiac Remodeling and Myocardial Fibrosis in Athletes Based on IVIM-DWI Images

description: To assess myocardial microcirculation in athletes using intravoxel incoherent motion (IVIM) diffusion-weighted imaging and its relationship with cardiac remodeling (CR) and myocardial fibrosis (MF).Continuous 174 athletes and 54 healthy sedentary controls were prospectively recruited for cardiac magnetic resonance imaging (CMRI). Bi-ventricular function and IVIM parameters of 16 myocardial segments for left ventricle were measured and compared between different groups. Subsequently, machine learning models were utilized to predict CR and/or MF based on numerous clinical data and these IVIM parameters. The fast apparent diffusion coefficient (ADCfast) and perfusion fraction (f) of 16 myocardial segments and each blood supply area in athletes were significantly lower than in controls (p &lt; 0.05). There were statistical differences for IVIM parameters among different exercise types (p&lt;0.05). The myocardial slow apparent diffusion coefficient (ADCslow) values of athletes with CR and/or MF were lower than the remaining athletes (p &lt; 0.05).The IVIM value were related with CMRI first-pass perfusion parameters and the presence of myocardial delayed enhancement (p &lt; 0.05). Gradient boosting machine (GBM) was the best model to predict CR and/or MF based on these hypo-perfusion parameters, with an accuracy of 78.7%, area under the receiver operating characteristic curve of 0.865, sensitivity of 82.8%, and specificity of 77.9%. The ADCslow value of the 5th segment was the most important predictor for CR and/or MF.
DOI: 10.17632/4gdf76zb8m.1
title: Machine learning technology predicts postoperative ileus after laparoscopic radical colorectal cancer resection combined with lobaplatin hyperthermic intraperitoneal chemotherapy(English last)

description: Machine learning technology predicts postoperative ileus after laparoscopic radical colorectal cancer resection combined with lobaplatin hyperthermic intraperitoneal chemotherapy(English last)
DOI: 10.17632/sy8gyx2bmx.1
title: Targeted lipidomics and transcriptomics data of white adipose tissue under ER stress

description: Endoplasmic reticulum (ER) stress is known to impair the function of visceral adipose tissue (VAT) and subcutaneous adipose tissue (SAT), disrupting lipid metabolism. Despite the crucial role lipid plays in regulating adipose tissue function, the specific lipidomic alterations in VAT and SAT under ER stress remain unclear. In this study, ER stress was induced in VAT and SAT, and targeted lipidomic and transcriptomic approaches were applied to assess the profiles of lipid metabolism and gene expression under ER stress condition. . The results revealed that VAT displayed a more pronounced ER stress response, including a marked increase in binding immunoglobulin protein (BiP) expression, and significant lipidomic disruptions, particularly in glycerides and sterols. These disruptions involved a reduction in protective polyunsaturated fatty acyl species and the accumulation of lipotoxic molecules. While SAT exhibited less severe disruptions in lipid metabolism. Transcriptomic analysis further revealed tissue-specific gene expression patterns, with VAT being more susceptible to immune activation, inflammation and metabolic dysfunction, while SAT exhibited alterations predominantly in protein folding processes. These findings provide critical insights into tissue-specific mechanisms of ER stress adaptation in adipose tissues, positioning VAT as a potential therapeutic target for addressing metabolic dysfunction in obesity-related disorders.
DOI: 10.17632/nvy9s767rx.1
title: Contrasting variations in solid acidity of smectite and kaolinite in acid-base environments and implications for carbron sequestration

description: The data for solid acidity of smectite and kaolinite subjected to acid-base environmental fluctuations. And the adsorption of lysine on the treated smectite and kaolinite.
DOI: 10.17632/xskkwncmzz.1
title: How effective are green spending multipliers? Eco-friendly vs non-eco-friendly spendings in OECD economies

description: The replication package is uploaded in line with prerequisite of the journal for the article titled "How effective are green spending multipliers? Eco-friendly vs non-eco-friendly spendings in OECD economies" for a possible publication in the Energy Economics.
DOI: 10.17632/76z6wkzpvw.1
title: Effects of pesticides on Apis cerana from passion fruit in Hainan island

description: The passion fruit not only has ornamental and edible value but also possesses certain medicinal properties, making it a highly popular tropical fruit. The use of pesticides during its cultivation, the quality and safety of the product, and its impact on wild insects in the ecological environment have always been topics of great concern to consumers. In this study, samples were collected from eight different regions of Hainan Island, including seven types of samples from passion fruit orchards and residual detection was conducted on 12 chemicals. The results showed that the pesticide detection rate of 12 chemicals ranged from 1.41% to 70.59%. Baoting region had the highest total pesticide detection rate (63.16%), with the highest detection rate of thiamethoxam residues, particularly during the first survey period (Time Point 1) (54.5%). The total pesticide detection rate was highest in passion fruit leaves, especially pyraclostrobin in the Time Point 1 (77.5%). Thiamethoxam residues were detected in all sample tissues, but no pesticide residues were detected in honey, and fluopimomide was not detected in all samples. Furthermore, The highest rate of thiamethoxam exceedance occurred in Baoting region especially during Time Point 1 (54.55%). The dietary intake risk assessment of passion fruit and honey is acceptable. Despite this, pesticide use affected honeybee colonies, with the Wuzhishan region most affected. The acute contact toxicity to Apis cerana of the four neonicotinoid insecticides measured showed that thiamethoxam had the highest toxicity, with a 48-hour LD50 value of 0.000754 μg a.i./bee, while acetamiprid had the lowest toxicity, with a 48-hour LD50 value of 0.225195 μg a.i./bee. The toxicity of the four tested neonicotinoid insecticides to adult A. cerana worker bees was all highly toxic. Therefore, it is recommended to use pesticides rationally during the passion fruit flowering period with caution to avoid harm to A. cerana pollination. These results ensure that the fruit consumed by consumers meets food safety standards. Additionally, testing the risk of pesticides to bees can assess the potential impact of pesticide use on bee populations, thereby taking measures to protect bees and maintain ecological balance.
DOI: 10.17632/g76xjmpvsz.1
title: Endogenous labeling empowers accurate detection of m6A from single long reads of direct RNA sequencing

description: Original data of this paper
DOI: 10.17632/m7jybjf4yy.1
title: Replication of "Grandchild care and grandparents’ labor supply"

description: This folder is used to replicate "Grandchild care and grandparents’ labor supply"
DOI: 10.17632/t7h3thp93m.1
title: List of genetic tests and genetic information

description: The main sample was based on second-generation sequencing technology, and the exon-based region was captured using a capture probe (GenCap) to cover the exon of the target gene and the single nucleotide variation (SNV), short fragment insertion deletion (indel), gene copy number variation (CNV) of ±50bp. Analysis of the sample revealed A heterozygous mutation in the NR3C1 gene: A heterozygous mutation in nucleotide 1839 from thymine T to adenine A (c.1839T&gt;A), resulting in amino acid 613 from tyrosine to terminator (p.Tyr613Ter).
DOI: 10.17632/pxrmfgg8rg.1
title: Data for: Canary palms in rural areas as invasion bridges: exploring simulated red palm weevil spread across date palm plantations

description: Data for the article "Canary palms in rural areas as invasion bridges: exploring simulated red palm weevil spread across date palm plantations"
DOI: 10.17632/6kyhhj6svh.1
title: Establishment of a prediction model for the timing of laparoscopic cholecystectomy (LC) after percutaneous transhepatic gallbladder drainage (PTGBD) in elderly patients with acute cholecystitis based on machine learning technology.

description: Establishment of a prediction model for the timing of laparoscopic cholecystectomy (LC) after percutaneous transhepatic gallbladder drainage (PTGBD) in elderly patients with acute cholecystitis based on machine learning technology.
DOI: 10.17632/tyrwtcycgk.1
title: Transferring prior knowledge in benchmark CNNs facilitates interpretable and cost-effective multi-timing wetland cover mapping under dynamic environments

description: Supplementary material for 'Transferring prior knowledge in benchmark CNNs facilitates interpretable and cost-effective multi-timing wetland cover mapping under dynamic environments'
DOI: 10.17632/tyrwtcycgk.2
title: Transferring visual knowledge in large-scale CNNs facilitates interpretable and cost-effective wetland cover mapping under dynamic environments

description: Code for 'Transferring visual knowledge in large-scale CNNs facilitates interpretable and cost-effective wetland cover mapping under dynamic environments'
DOI: 10.5281/zenodo.13977984
title: DAPI images, molecules and segmentation boundaries for: A Spatiotemporal Atlas of Mouse Gastrulation and Early Organogenesis to Explore Axial Patterning and Project In Vitro Models onto In Vivo Space

description:  

Data Description



Stitched & rotated DAPI images - tiff file format filename indicates sample and optical z-slice position, i.e. embryo3_z5.tif is the DAPI image for embryo 3 in optical z-slice 5. Also provided in PNG format.

Detected molecules and cell segmentation in MoleculeExperiment objects - RDS files to read data using the MoleculeExperiment format in R/Bioconductor. Filename embryo3_z5.Rds indicates MoleculeExperiment RDS file for embryo 3 in optical z-slice 5. Coordinates are provided in microns. Note that z-slices 2 and 5 are only provided for embryos 1,2,3 as they were originally provided in Lohoff et al, Nature Biotechnology, 2023.

Pixels-to-microns conversion - pixelSize.R Simple R script/text to indicate the size of each pixel in the DAPI images, this is to align the coordinate systems between the DAPI images and molecules.



Project Abstract


At the onset of murine gastrulation, pluripotent epiblast cells migrate through the primitive streak, generating mesodermal and endodermal precursors, while the ectoderm arises from the remaining epiblast. Together, these germ layers establish the body plan, defining major body axes and initiating organogenesis. Although comprehensive single cell transcriptional atlases of dissociated mouse embryos across embryonic stages have provided valuable insights during gastrulation, the spatial context for cell differentiation and tissue patterning remain underexplored. In this study, we employed spatial transcriptomics to measure gene expression in mouse embryos at E6.5 and E7.5 and integrated these datasets with previously published E8.5 spatial transcriptomics and a scRNA-seq atlas spanning E6.5 to E9.5. This approach resulted in a comprehensive spatiotemporal atlas, comprising over 150,000 cells with 88 refined cell type annotations as well as genome-wide transcriptional imputation during mouse gastrulation and early organogenesis. The atlas facilitates exploration of gene expression dynamics along anterior-posterior and dorsal-ventral axes at cell type, tissue, and organismal scales, revealing insights into mesodermal fate decisions within the primitive streak. Moreover, we developed a bioinformatics pipeline to project additional scRNA-seq datasets into a spatiotemporal framework and demonstrate its utility by analysing cardiovascular models of gastrulation3. To maximise impact, the atlas is publicly accessible via a user-friendly web portal empowering the wider developmental and stem cell biology communities to explore mechanisms of early mouse development in a spatiotemporal context.
DOI: 10.5281/zenodo.13977985
title: DAPI images, molecules and segmentation boundaries for: A Spatiotemporal Atlas of Mouse Gastrulation and Early Organogenesis to Explore Axial Patterning and Project In Vitro Models onto In Vivo Space

description:  

Data Description



Stitched & rotated DAPI images - tiff file format filename indicates sample and optical z-slice position, i.e. embryo3_z5.tif is the DAPI image for embryo 3 in optical z-slice 5. Also provided in PNG format.

Detected molecules and cell segmentation in MoleculeExperiment objects - RDS files to read data using the MoleculeExperiment format in R/Bioconductor. Filename embryo3_z5.Rds indicates MoleculeExperiment RDS file for embryo 3 in optical z-slice 5. Coordinates are provided in microns. Note that z-slices 2 and 5 are only provided for embryos 1,2,3 as they were originally provided in Lohoff et al, Nature Biotechnology, 2023.

Pixels-to-microns conversion - pixelSize.R Simple R script/text to indicate the size of each pixel in the DAPI images, this is to align the coordinate systems between the DAPI images and molecules.



Project Abstract


At the onset of murine gastrulation, pluripotent epiblast cells migrate through the primitive streak, generating mesodermal and endodermal precursors, while the ectoderm arises from the remaining epiblast. Together, these germ layers establish the body plan, defining major body axes and initiating organogenesis. Although comprehensive single cell transcriptional atlases of dissociated mouse embryos across embryonic stages have provided valuable insights during gastrulation, the spatial context for cell differentiation and tissue patterning remain underexplored. In this study, we employed spatial transcriptomics to measure gene expression in mouse embryos at E6.5 and E7.5 and integrated these datasets with previously published E8.5 spatial transcriptomics and a scRNA-seq atlas spanning E6.5 to E9.5. This approach resulted in a comprehensive spatiotemporal atlas, comprising over 150,000 cells with 88 refined cell type annotations as well as genome-wide transcriptional imputation during mouse gastrulation and early organogenesis. The atlas facilitates exploration of gene expression dynamics along anterior-posterior and dorsal-ventral axes at cell type, tissue, and organismal scales, revealing insights into mesodermal fate decisions within the primitive streak. Moreover, we developed a bioinformatics pipeline to project additional scRNA-seq datasets into a spatiotemporal framework and demonstrate its utility by analysing cardiovascular models of gastrulation3. To maximise impact, the atlas is publicly accessible via a user-friendly web portal empowering the wider developmental and stem cell biology communities to explore mechanisms of early mouse development in a spatiotemporal context.
DOI: 10.15468/dl.bb8yfc
title: Occurrence Download

description: A dataset containing 101233851 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is iNaturalist Research-grade Observations"
 ]
}

 The dataset includes 101233851 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008678-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2wmz3j
title: Occurrence Download

description: A dataset containing 114 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-121.53912 25.28623,-101.02715 25.28623,-101.02715 33.49102,-121.53912 33.49102,-121.53912 25.28623))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Caesalpinia palmeri S.Watson"
 ]
}

 The dataset includes 114 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008743-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mek89e
title: Occurrence Download

description: A dataset containing 326 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Registros de conflicto humano-fauna en Ecuador desde el año 2009 al 2022"
 ]
}

 The dataset includes 326 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008741-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27664110
title: Original-Langauge-Results

description: The Original-Langauge-Results folder contains the results for each LLM model saved in individual excel files with each sheet in the file as the results from each language, with their sentiment evaluated by the LLM without translation.
DOI: 10.6084/m9.figshare.27664110.v1
title: Original-Langauge-Results

description: The Original-Langauge-Results folder contains the results for each LLM model saved in individual excel files with each sheet in the file as the results from each language, with their sentiment evaluated by the LLM without translation.
DOI: 10.6084/m9.figshare.27664113
title: Translated-Results Folder

description: The Translated-Results folder contains the results for the translated to English results, with each excel file containing the original text and its translation to English with Google Translate, with each sheet in the Excel file showing the results of the sentiment analysis conducted by each Commercial LLM.
DOI: 10.6084/m9.figshare.27664113.v1
title: Translated-Results Folder

description: The Translated-Results folder contains the results for the translated to English results, with each excel file containing the original text and its translation to English with Google Translate, with each sheet in the Excel file showing the results of the sentiment analysis conducted by each Commercial LLM.
DOI: 10.15468/dl.q5n84u
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lissotriton vulgaris (Linnaeus, 1758)",
 "Year is 76",
 "Country is Netherlands"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008749-241107131044228/datasets/export for details.
DOI: 10.15468/dl.bfp7u2
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Sphyrna mokarran (Rüppell, 1837)"
 ]
}

 The dataset includes 11 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008744-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xfkkj6
title: Occurrence Download

description: A dataset containing 346 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-134.31981 12.27208,-70.68019 12.27208,-70.68019 37.72792,-134.31981 37.72792,-134.31981 12.27208))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Erythrostemon palmeri (S.Watson) Gagnon & G.P.Lewis"
 ]
}

 The dataset includes 346 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008753-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vhs6r8
title: Occurrence Download

description: A dataset containing 6793 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation)",
 "TaxonKey is Mustela sibirica Pallas, 1773"
 ]
}

 The dataset includes 6793 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008751-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2mff54
title: Occurrence Download

description: A dataset containing 769 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oscularia deltoides (L.) Schwantes"
 ]
}

 The dataset includes 769 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008745-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nx4z9f
title: Occurrence Download

description: A dataset containing 6793 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation)",
 "TaxonKey is Mustela sibirica Pallas, 1773"
 ]
}

 The dataset includes 6793 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008747-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tbd3t4
title: Occurrence Download

description: A dataset containing 1865 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Araucaria angustifolia (Bertol.) Kuntze)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1865 records from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008756-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fasrur
title: Occurrence Download

description: A dataset containing 40578 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "GadmGid is USA.47_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Strix varia Barton, 1799",
 "Year 2010-2024"
 ]
}

 The dataset includes 40578 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008755-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.