cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17026/ar/xg4jan
title: PAN-00108775 - coin/coin-related, (anoniem), triquetrum-stater; regenboogschoteltje

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00108775&lt;/p&gt;
description: Modified: 2025-06-17T08:35:21+02:00
DOI: 10.5517/ccdc.csd.cc2p5n9v
title: CCDC 2478087: Experimental Crystal Structure Determination

description: Related Article: Manuel Kümper, Franz F. Westermair, Tobias Götz, Ruth M. Gschwind, Jonathan O. Bauer|2025|Angew.Chem.,Int.Ed.|64|e202517017|doi:10.1002/anie.202517017
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2p5nbw
title: CCDC 2478088: Experimental Crystal Structure Determination

description: Related Article: Manuel Kümper, Franz F. Westermair, Tobias Götz, Ruth M. Gschwind, Jonathan O. Bauer|2025|Angew.Chem.,Int.Ed.|64|e202517017|doi:10.1002/anie.202517017
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2p5ncx
title: CCDC 2478089: Experimental Crystal Structure Determination

description: Related Article: Manuel Kümper, Franz F. Westermair, Tobias Götz, Ruth M. Gschwind, Jonathan O. Bauer|2025|Angew.Chem.,Int.Ed.|64|e202517017|doi:10.1002/anie.202517017
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2p5qp9
title: CCDC 2478161: Experimental Crystal Structure Determination

description: Related Article: Yu-Yu Chen, Tian-Ya Liu, Jia Xue, Cheng-Ye Xu, Yu-Chen Zhang, Feng Shi|2025|Chem.Asian J.|20|e00861|doi:10.1002/asia.202500861
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2p7mh2
title: CCDC 2479984: Experimental Crystal Structure Determination

description: Related Article: Lu Kang, Yuqiang Liu, Lili Duan, Shuangwei Liu, Penghao Jia|2025|Org.Lett.|||doi:10.1021/acs.orglett.5c04188
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2pdsb7
title: CCDC 2484939: Experimental Crystal Structure Determination

description: Related Article: Shu-hui Wang, Cheng-Yu Yang, Jia-Shu He, Cheng-Jun Jiang
|2025|Z.Kristallogr.-New Cryst.Struct.|240|895|doi:10.1515/ncrs-2025-0321
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2pdxxy
title: CCDC 2485081: Experimental Crystal Structure Determination

description: Related Article: Ting Yang, Ze-Gang Ma, Wen-Hui Zhang, Zhen-Nan Shan, Ying Zhou, Li-Yan Zhang, Chuan-Wen Lei|2025|J.Org.Chem.|||doi:10.1021/acs.joc.5c02354
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17026/ar/2unxw5
title: PAN-00061153 - iron file/rasp

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00061153&lt;/p&gt;
description: Modified: 2025-07-10T13:33:27+02:00
DOI: 10.17026/ar/2zz7ho
title: PAN-00115428 - medieval badge: ampulla, ambiguous

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00115428&lt;/p&gt;
description: Modified: 2025-09-05T15:54:59+02:00
DOI: 10.15468/dl.yzsp7n
title: Occurrence Download

description: A dataset containing 278563 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Database for the Atlas of Freshwater Fishes"
 ]
}

 The dataset includes 278563 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048251-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.11582/2025.43omfap0
title: Oxford Nanopore sequencing data for Trisopterus esmarkii

description: This repository contains the raw sequencing data from Oxford Nanopore sequencing. Currently, is it not possible to deposit this in INSDC, but recalling bases from this raw sequencing data can be really useful for genome assembly projects.
DOI: 10.5281/zenodo.14209925
title: LD reference panel for UKB-PPP cis-pQTL

description: NEWLOC_protein.txt includes information for 2954 cis-pQTL regions.

Each row name in the file follows the format:

[GeneSymbol].[GeneSymbol]_[UniProtID]_[OlinkID]_v[Version]_[PanelName]_[Number].[Chromosome]:[StartPosition]-[EndPosition];

For example, "A1BG.A1BG_P04217_OID30771_v1_Inflammation_II_2.19:57856549-59864858"

In the "LD.path", it includes LD files, eigenvectors, and eigen matrixes for all local regions, end by "_LDSVD.rda"

In the "bim.path", it includes bim files for local regions, which helps to clean the summary statistics data and check if there are multiallelic or duplicated SNPs

In the "Figures.zip", it includes all the datasets and analysis scripts required to reproduce Figure 1–3, Figure 4A, and Supplementary Figures S1–S4 from the manuscript “High-definition likelihood inference of colocalization reveals protein biomarkers for human complex diseases.”

All data files are released under the CC0 1.0 Universal license to support full reproducibility and reuse.
DOI: 10.5281/zenodo.17904964
title: LD reference panel for UKB-PPP cis-pQTL

description: NEWLOC_protein.txt includes information for 2954 cis-pQTL regions.

Each row name in the file follows the format:

[GeneSymbol].[GeneSymbol]_[UniProtID]_[OlinkID]_v[Version]_[PanelName]_[Number].[Chromosome]:[StartPosition]-[EndPosition];

For example, "A1BG.A1BG_P04217_OID30771_v1_Inflammation_II_2.19:57856549-59864858"

In the "LD.path", it includes LD files, eigenvectors, and eigen matrixes for all local regions, end by "_LDSVD.rda"

In the "bim.path", it includes bim files for local regions, which helps to clean the summary statistics data and check if there are multiallelic or duplicated SNPs

In the "Figures.zip", it includes all the datasets and analysis scripts required to reproduce Figure 1–3, Figure 4A, and Supplementary Figures S1–S4 from the manuscript “High-definition likelihood inference of colocalization reveals protein biomarkers for human complex diseases.”

All data files are released under the CC0 1.0 Universal license to support full reproducibility and reuse.
DOI: 10.17026/ar/vkeejf
title: PAN-00147166 - jug (Roman smooth ware pottery)

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00147166&lt;/p&gt;
description: Modified: 2025-11-10T17:22:07+01:00
DOI: 10.15468/dl.rjr93r
title: Occurrence Download

description: A dataset containing 383708 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is one of (Hesperiphona vespertina)",
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "Year is greater than or equal to 1951",
 "Year is less than or equal to 2024",
 "Month is greater than or equal to April",
 "Month is less than or equal to July",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 383708 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048240-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7kbqr8
title: Occurrence Download

description: A dataset containing 4768 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Antarctic Penguin Biogeography Project: Database of abundance and distribution for the Adélie, chinstrap, gentoo, emperor, macaroni, and king penguin south of 60 S"
 ]
}

 The dataset includes 4768 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048252-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y9a6a2
title: Occurrence Download

description: A dataset containing 6703 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Paspalum notatum"
 ]
}

 The dataset includes 6703 records from 334 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048254-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/zznal7
title: PAN-00174827 - Roman rotary key with C-formed handle

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00174827&lt;/p&gt;
description: Modified: 2025-08-11T15:31:55+02:00
DOI: 10.5519/qd.rp2cmu48
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (66 records)
DOI: 10.17026/ar/muvuiw
title: PAN-00105137 - coin/coin-related, Constantinus I en zonen (306-361), naar, nummus

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00105137&lt;/p&gt;
description: Modified: 2025-06-02T05:45:38+02:00
DOI: 10.15468/dl.se5cdy
title: Occurrence Download

description: A dataset listing the 6 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Antarctic Penguin Biogeography Project: Database of abundance and distribution for the Adélie, chinstrap, gentoo, emperor, macaroni, and king penguin south of 60 S"
 ]
}

 The dataset's 6 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048253-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17888139
title: Files related to scMalignantFinder

description: combine_training.h5ad: training data

test_TabulaSapiens.h5ad: test data of healthy organs

test_cancerCellLine.h5ad: test data of cancer cell lines

combined_tumor_up_down_degs.txt: feature list for pretrained model

ordered_feature.tsv: ordered feature list for pretrained model

model.joblib: pretrained model

sc_malignant_deg.gmt: genes upregulated or downregulated in  malignant cells

Malignant_MPs.Gavish_2023.gmt: 67 cancer cell state gene sets
DOI: 10.5281/zenodo.17888140
title: Files related to scMalignantFinder

description: combine_training.h5ad: training data

test_TabulaSapiens.h5ad: test data of healthy organs

test_cancerCellLine.h5ad: test data of cancer cell lines

combined_tumor_up_down_degs.txt: feature list for pretrained model

ordered_feature.tsv: ordered feature list for pretrained model

model.joblib: pretrained model

sc_malignant_deg.gmt: genes upregulated or downregulated in  malignant cells

Malignant_MPs.Gavish_2023.gmt: 67 cancer cell state gene sets
DOI: 10.34740/kaggle/dsv/14117325
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.17026/ar/b2xc0s
title: PAN-00163609 - terra sigillata bowl type Drag. 29

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00163609&lt;/p&gt;
description: Modified: 2025-10-23T09:11:32+02:00
DOI: 10.17026/ar/mlk9e6
title: PAN-00170100 - iron nail general

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00170100&lt;/p&gt;
description: Modified: 2025-08-11T14:15:48+02:00
DOI: 10.5281/zenodo.17376371
title: Online Appendix and Replication Package – Empirical Evaluation of Open Source Large Language Models for Paper Selection (SANER 2026)

description: This dataset provides comprehensive supplementary materials for the paper "Empirical Evaluation of Open Source Large Language Models for Paper Selection: Are LLMs Trustworthy Tools for Scoping Reviews?" submitted to SANER 2026.It includes complete keyword lists, venue selections, inclusion criteria, raw data, analysis scripts, and validation results for multiple large language models (GPT-4.1, Mistral v2 7B, and Llama 3.3 70B) across three domains: program slicing, reactive programming, and software engineering.Sensitive information such as API keys, .env files, and private logs has been excluded.

 

License: MITKeywords: Large Language Models, Open-Source AI, Paper Screening, Scoping Reviews, Software Engineering, Replication Package
DOI: 10.5281/zenodo.17904959
title: Online Appendix and Replication Package – Empirical Evaluation of Open Source Large Language Models for Paper Selection (SANER 2026)

description: This dataset provides comprehensive supplementary materials for the paper "Empirical Evaluation of Open Source Large Language Models for Paper Selection: Are LLMs Trustworthy Tools for Scoping Reviews?" submitted to SANER 2026.It includes complete keyword lists, venue selections, inclusion criteria, raw data, analysis scripts, and validation results for multiple large language models (GPT-4.1, Mistral v2 7B, and Llama 3.3 70B) across three domains: program slicing, reactive programming, and software engineering.Sensitive information such as API keys, .env files, and private logs has been excluded.

 

License: MITKeywords: Large Language Models, Open-Source AI, Paper Screening, Scoping Reviews, Software Engineering, Replication Package
DOI: 10.5281/zenodo.17767426
title: Data and code release: Observation of inclination-dependent ringdown frequency shifts in 33 binary black hole mergers

description: Public data release accompanying the paper "Observation of inclination-dependent ringdown frequency shifts in 33 binary black hole mergers: Evidence for the Semi-Dirac membrane paradigm" (Frederick Manfredi, 2025).

This dataset contains:
• master_data.json – processed table of 33 real LIGO/Virgo/KAGRA binary black hole events (O1–O4) with official inclination posteriors, masses, network SNR, and the predicted Semi-Dirac frequency shift δf = +0.06 × f_ISCO × sin⁴ι
• Extraction script (gwtc_real_inclination.py) that reads all public GWTC-1/2.1/3/4 .h5/.hdf5 files using PESummary
• Plotting script (SEMI_DIRAC_final.py) reproducing the 4.4 σ result
• Final figure (SemiDirac_33_events.png)


The code automatically handles new public posterior files and incrementally updates the master table. All gravitational-wave samples are publicly available from GWOSC and the cited Zenodo records (GWTC-1, GWTC-2.1, GWTC-3, GWTC-4).

License: CC-BY-4.0
Please cite this Zenodo record and the accompanying paper when reusing the data or code.
DOI: 10.15468/dl.t974zv
title: Occurrence Download

description: A dataset containing 1970 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-73.4279 8.67888,-72.71993 8.67888,-72.71993 9.27725,-73.4279 9.27725,-73.4279 8.67888))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1970 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048257-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2pgr1z
title: CCDC 2486821: Experimental Crystal Structure Determination

description: Related Article: Ting Yang, Ze-Gang Ma, Wen-Hui Zhang, Zhen-Nan Shan, Ying Zhou, Li-Yan Zhang, Chuan-Wen Lei|2025|J.Org.Chem.|||doi:10.1021/acs.joc.5c02354
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2plr57
title: CCDC 2490669: Experimental Crystal Structure Determination

description: Related Article: Dieter Schollmeyer,  Heiner Detert|2025|Molbank|2025|M2082|doi:10.3390/M2082
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2plr68
title: CCDC 2490670: Experimental Crystal Structure Determination

description: Related Article: Dieter Schollmeyer,  Heiner Detert|2025|Molbank|2025|M2082|doi:10.3390/M2082
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2pm8m7
title: CCDC 2491179: Experimental Crystal Structure Determination

description: Related Article: Kuntrapakam Hema, Hamish W. A. Swanson, Elma Naranjo, Avishek Dey, Crisol L. Aguirre Ortiz, Michelle C. Neary, Denize F. Favaro, Tong Wang, Xi Chen, Rein V. Ulijn|2025|ChemRxiv|||doi:10.26434/chemrxiv-2025-q6wqd
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2pm8n8
title: CCDC 2491180: Experimental Crystal Structure Determination

description: Related Article: Kuntrapakam Hema, Hamish W. A. Swanson, Elma Naranjo, Avishek Dey, Crisol L. Aguirre Ortiz, Michelle C. Neary, Denize F. Favaro, Tong Wang, Xi Chen, Rein V. Ulijn|2025|ChemRxiv|||doi:10.26434/chemrxiv-2025-q6wqd
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2pmyq0
title: CCDC 2491833: Experimental Crystal Structure Determination

description: Related Article: Ruotong Li
|2025|Z.Kristallogr.-New Cryst.Struct.|240|865|doi:10.1515/ncrs-2025-0303
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2n89nx
title: CCDC 2450849: Experimental Crystal Structure Determination

description: Related Article: Raghunath Aeluri, Shreya Patlolla, Lohith Kotte, Divakar Reddy Indukuri, Arsha Maria Cherian, Srikanth Malladi, Yarasi Soujanya, Manjula Alla, Jagadeesh Babu Nanubolu|2025|Chem.Asian J.|20|e70396|doi:10.1002/asia.70396
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2pn4yg
title: CCDC 2492026: Experimental Crystal Structure Determination

description: Related Article: Nikolaos V. Tzouras, Ruben Fleischer, Pierpaolo Satta, Sourav Manna, Angelino Doppiu, Lukas J. Gooßen|2025|Chem.Commun.|61|19433|doi:10.1039/d5cc05726d
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17026/ar/tryhbo
title: PAN-00172843 - seal with long connecting strip

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00172843&lt;/p&gt;
description: Modified: 2025-10-22T11:23:13+02:00
DOI: 10.5281/zenodo.17767425
title: Data and code release: Observation of inclination-dependent ringdown frequency shifts in 33 binary black hole mergers

description: Public data release accompanying the paper "Observation of inclination-dependent ringdown frequency shifts in 33 binary black hole mergers: Evidence for the Semi-Dirac membrane paradigm" (Frederick Manfredi, 2025).

This dataset contains:
• master_data.json – processed table of 33 real LIGO/Virgo/KAGRA binary black hole events (O1–O4) with official inclination posteriors, masses, network SNR, and the predicted Semi-Dirac frequency shift δf = +0.06 × f_ISCO × sin⁴ι
• Extraction script (gwtc_real_inclination.py) that reads all public GWTC-1/2.1/3/4 .h5/.hdf5 files using PESummary
• Plotting script (SEMI_DIRAC_final.py) reproducing the 4.4 σ result
• Final figure (SemiDirac_33_events.png)


The code automatically handles new public posterior files and incrementally updates the master table. All gravitational-wave samples are publicly available from GWOSC and the cited Zenodo records (GWTC-1, GWTC-2.1, GWTC-3, GWTC-4).

License: CC-BY-4.0
Please cite this Zenodo record and the accompanying paper when reusing the data or code.