cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.3uaqar
title: Occurrence Download

description: A dataset containing 1100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Annona tomentosa R.E.Fr.",
 "OccurrenceStatus is Present",
 "Country is not null",
 "Year is not null"
 ]
}

 The dataset includes 1100 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009601-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9gnpaa
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pipestoneomyidae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 97 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009602-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3wc253
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Reithroparamyidae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 125 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009604-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5q7ja5
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Protoptychidae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 27 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009603-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fnvqk2
title: Occurrence Download

description: A dataset containing 249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lygodium polystachyum Wall. ex T.Moore",
 "OccurrenceStatus is Present",
 "Country is not null",
 "Year is not null"
 ]
}

 The dataset includes 249 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009605-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p9zgt6
title: Occurrence Download

description: A dataset containing 439 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Annona cornifolia A.St.-Hil.",
 "OccurrenceStatus is Present",
 "Country is not null",
 "Year is not null"
 ]
}

 The dataset includes 439 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009606-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5y8qa3
title: Occurrence Download

description: A dataset containing 386 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tetracera scandens (L.) Merr.",
 "OccurrenceStatus is Present",
 "Country is not null",
 "Year is not null"
 ]
}

 The dataset includes 386 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009607-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j9yzeh
title: Occurrence Download

description: A dataset containing 4824 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sciuravidae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 4824 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009610-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kd69kf
title: Occurrence Download

description: A dataset containing 30037 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is MEX.20_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Squamata"
 ]
}

 The dataset includes 30037 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009608-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zqaphz
title: Occurrence Download

description: A dataset containing 6074 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Simimyidae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 6074 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009613-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27214911
title: China

description: <b>A new water resources dataset for China, referred to as ChinaWR, was developed </b><b>using a random forest model based on high-resolution (prefecture-level) data reported in the </b><b>Water Resources Bulletins of China. ChinaWR </b><b>provides1 km and monthly estimates of SWR, GWR, and TWR (i.e., </b><b>total volume of water resources generated by precipitation</b><b>) from 1980 to 202</b><b>A new water resources dataset for China, referred to as ChinaWR, was developed </b><b>using a random forest model based on high-resolution (prefecture-level) data reported in the </b><b>Water Resources Bulletins of China. ChinaWR </b><b>provides1 km and monthly estimates of SWR, GWR, and TWR (i.e., </b><b>total volume of water resources generated by precipitation</b><b>) from 1980 to 202</b><b>A new water resources dataset for China, referred to as ChinaWR, was developed </b><b>using a random forest model based on high-resolution (prefecture-level) data reported in the </b><b>Water Resources Bulletins of China. ChinaWR </b><b>provides1 km and monthly estimates of SWR, GWR, and TWR (i.e., </b><b>total volume of water resources generated by precipitation</b><b>) from 1980 to 202</b>
DOI: 10.6084/m9.figshare.27214911.v1
title: China

description: <b>A new water resources dataset for China, referred to as ChinaWR, was developed </b><b>using a random forest model based on high-resolution (prefecture-level) data reported in the </b><b>Water Resources Bulletins of China. ChinaWR </b><b>provides1 km and monthly estimates of SWR, GWR, and TWR (i.e., </b><b>total volume of water resources generated by precipitation</b><b>) from 1980 to 202</b><b>A new water resources dataset for China, referred to as ChinaWR, was developed </b><b>using a random forest model based on high-resolution (prefecture-level) data reported in the </b><b>Water Resources Bulletins of China. ChinaWR </b><b>provides1 km and monthly estimates of SWR, GWR, and TWR (i.e., </b><b>total volume of water resources generated by precipitation</b><b>) from 1980 to 202</b><b>A new water resources dataset for China, referred to as ChinaWR, was developed </b><b>using a random forest model based on high-resolution (prefecture-level) data reported in the </b><b>Water Resources Bulletins of China. ChinaWR </b><b>provides1 km and monthly estimates of SWR, GWR, and TWR (i.e., </b><b>total volume of water resources generated by precipitation</b><b>) from 1980 to 202</b>
DOI: 10.15468/dl.rx5ja6
title: Occurrence Download

description: A dataset containing 2331 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Annona coriacea Mart.",
 "OccurrenceStatus is Present",
 "Country is not null",
 "Year is not null"
 ]
}

 The dataset includes 2331 records from 138 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009609-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bybcv3
title: Occurrence Download

description: A dataset containing 290 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Syzygium grande (Wight) N.P.Balakr.",
 "OccurrenceStatus is Present",
 "Country is not null",
 "Year is not null"
 ]
}

 The dataset includes 290 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009614-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.86rebn
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Annona ekmanii R.E.Fr.",
 "OccurrenceStatus is Present",
 "Country is not null",
 "Year is not null"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009615-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hyz2z9
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zegdoumyidae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009617-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gppguq
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spalacidae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009616-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2h9kxt
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sterculia rugosa R.Br.",
 "OccurrenceStatus is Present",
 "Country is not null",
 "Year is not null"
 ]
}

 The dataset includes 113 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009618-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2jhknm
title: Occurrence Download

description: A dataset containing 190 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mitrella kentii (Blume) Miq.",
 "OccurrenceStatus is Present",
 "Country is not null",
 "Year is not null"
 ]
}

 The dataset includes 190 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009619-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xx4f3p
title: Occurrence Download

description: A dataset containing 222 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pristimantis bicolor (Rueda-Almonacid & Lynch, 1983)"
 ]
}

 The dataset includes 222 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009620-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tp72fe
title: Occurrence Download

description: A dataset containing 2349 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polygala major Jacq.",
 "OccurrenceStatus is Present",
 "Country is not null",
 "Year is not null"
 ]
}

 The dataset includes 2349 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009621-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bq68ca
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melodorum leichhardtii (F.Muell.) Benth.",
 "OccurrenceStatus is Present",
 "Country is not null",
 "Year is not null"
 ]
}

 The dataset includes 34 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009622-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qqbr5m
title: Occurrence Download

description: A dataset containing 338 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Annickia chlorantha (Oliv.) Setten & Maas",
 "OccurrenceStatus is Present",
 "Country is not null",
 "Year is not null"
 ]
}

 The dataset includes 338 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009624-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6n45dv
title: Occurrence Download

description: A dataset containing 19973 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erica multiflora L.",
 "OccurrenceStatus is Present",
 "Country is not null",
 "Year is not null"
 ]
}

 The dataset includes 19973 records from 151 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009623-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7zmzmu
title: Occurrence Download

description: A dataset containing 396 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Patzkea durandoi (Clauson) G.H.Loos",
 "OccurrenceStatus is Present",
 "Country is not null",
 "Year is not null"
 ]
}

 The dataset includes 396 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009625-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15226690
title: Substrate-Aware Zero-Shot Predictors for Non-Native Enzyme Activities

description: The `data/` folder is organized as follows:



`lib/` contains CSV files with sequence (AAs), fitness, and selectivity (when applicable) data.



Each file is named using the format `{enzyme}_{substrate}.csv`.

Note: `ParLQ-a` is sometime abbreviated as `ParLQ`.



`seq/` contains FASTA files for each enzyme sequence.

`structure/` contains the structural files in PDB format.



`ParLQ.pdb` is taken from Yang and Lal et al. (2025).

`PfTrpB.pdb` corresponds to chain A of PDB entry `5DW0`.

`Rma.pdb` corresponds to PDB entry `3CP5`.

`apo/` contains apo (substrate-free) structures in PDB format.

`clean/` contains cleaned structures (solvent removed) in PDB format.

`docked/` contains docked structures in CIF format, generated using AF3 or Chai.



See `docked/README.md` for additional information on the docked structures.





`evmodel/` contains EVcouplings model files (`.model`) for each enzyme, which are used to calculate EVmutation scores.

`evmodel_dets/` contains detailed metadata for the corresponding EVcouplings models.
DOI: 10.5281/zenodo.15226691
title: Substrate-Aware Zero-Shot Predictors for Non-Native Enzyme Activities

description: The `data/` folder is organized as follows:



`lib/` contains CSV files with sequence (AAs), fitness, and selectivity (when applicable) data.



Each file is named using the format `{enzyme}_{substrate}.csv`.

Note: `ParLQ-a` is sometime abbreviated as `ParLQ`.



`seq/` contains FASTA files for each enzyme sequence.

`structure/` contains the structural files in PDB format.



`ParLQ.pdb` is taken from Yang and Lal et al. (2025).

`PfTrpB.pdb` corresponds to chain A of PDB entry `5DW0`.

`Rma.pdb` corresponds to PDB entry `3CP5`.

`apo/` contains apo (substrate-free) structures in PDB format.

`clean/` contains cleaned structures (solvent removed) in PDB format.

`docked/` contains docked structures in CIF format, generated using AF3 or Chai.



See `docked/README.md` for additional information on the docked structures.





`evmodel/` contains EVcouplings model files (`.model`) for each enzyme, which are used to calculate EVmutation scores.

`evmodel_dets/` contains detailed metadata for the corresponding EVcouplings models.
DOI: 10.15468/dl.dzadc9
title: Occurrence Download

description: A dataset containing 689 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Lithobates capito (LeConte, 1855))"
 ]
}

 The dataset includes 689 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001924-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8mj68q
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Crossodactylus aeneus Müller, 1924"
 ]
}

 The dataset includes 25 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023823-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cv3u98
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Barbosella schista Luer & R.Escobar"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0146681-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rygb0y
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orbea dummeri (N.E.Br.) Bruyns"
 ]
}

 The dataset includes 32 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033293-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g6nbvu
title: Occurrence Download

description: A dataset containing 808 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "TaxonKey is Passer montanus (Linnaeus, 1758)",
 "Year 1978-1978"
 ]
}

 The dataset includes 808 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0180056-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ub6msy
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Paratelmatobius gaigeae (Cochran, 1938)"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023853-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fucvn6
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Romerolagus diazi (Ferrari-Pérez, 1893)",
 "Year 2001-2024"
 ]
}

 The dataset includes 17 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004963-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y6wxwa
title: Occurrence Download

description: A dataset containing 60937 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amanita muscaria (L.) Lam., 1783"
 ]
}

 The dataset includes 60937 records from 271 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0180042-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c8xnku
title: Occurrence Download

description: A dataset containing 3725 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Araucaria araucana (Molina) K.Koch"
 ]
}

 The dataset includes 3725 records from 202 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0146682-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h88jvr
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Cacosternum nanogularum Channing, Schmitz, Burger & Kielgast, 2013"
 ]
}

 The dataset includes 16 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023824-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xb61hq
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Actualización de la base de datos del Atlas Mastozoológico de México",
 "TaxonKey is Panthera onca (Linnaeus, 1758)"
 ]
}

 The dataset includes 58 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033295-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pwns3x
title: Occurrence Download

description: A dataset listing the 4 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Apis mellifera Linnaeus, 1758",
 "Year 1000-2019"
 ]
}

 The dataset's 4 records were derived from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184826-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.