cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zakzmf
title: Occurrence Download

description: A dataset containing 7104 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Russula aurea Pers."
 ]
}

 The dataset includes 7104 records from 189 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006713-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2dy95v
title: CCDC 2232687: Experimental Crystal Structure Determination

description: Related Article: Shohei Kumagai, Takeru Koguma, Yutaro Arai, Go Watanabe, Hiroyuki Ishii, Jun Takeya, Toshihiro Okamoto|2025|Mol. Syst. Des. Eng.|10|32|doi:10.1039/D4ME00110A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fw4zg
title: CCDC 2260426: Experimental Crystal Structure Determination

description: Related Article: Wesley V. Ferreira, Fátima R. Ráice, Alecia F. da Silva, Ianka J. Nunes, Rodrigo Cervo, Roberta Cargnelutti, Jenifer Saffi, Jorge Luiz S. Milani, Osvaldo de L. Casagrande, Adriana C. Pinheiro|2025|J.Mol.Struct.|1327|141239|doi:10.1016/j.molstruc.2024.141239
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.nvycs8
title: Occurrence Download

description: A dataset containing 4287 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plantae)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((1.591467 41.768239, 1.591467 41.836587, 1.760449 41.836587, 1.760449 41.768239, 1.591467 41.768239))"
 ]
}

 The dataset includes 4287 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006716-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2glnf5
title: CCDC 2282047: Experimental Crystal Structure Determination

description: Related Article: Yu-Ling Liu, Ruiqin Zhu, Li Liu, Xin-Xin Zhong, Fa-Bao Li, Guijiang Zhou, Hai-Mei Qin|2025|Inorg.Chem.Front.|12|1139|doi:10.1039/D4QI02415J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l30pf
title: CCDC 2386184: Experimental Crystal Structure Determination

description: Related Article: Lorenzo Biancalana, Isacco Gualandi, Stefano Zacchini, Giulia Martelli, Erika Scavetta, Valerio Zanotti, Rita Mazzoni, Fabio Marchetti|2025|Inorg.Chem.Front.|12|1156|doi:10.1039/D4QI02479F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l30qg
title: CCDC 2386185: Experimental Crystal Structure Determination

description: Related Article: Lorenzo Biancalana, Isacco Gualandi, Stefano Zacchini, Giulia Martelli, Erika Scavetta, Valerio Zanotti, Rita Mazzoni, Fabio Marchetti|2025|Inorg.Chem.Front.|12|1156|doi:10.1039/D4QI02479F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l6z60
title: CCDC 2389982: Experimental Crystal Structure Determination

description: Related Article: Chinari Fukushi, Takashi Komuro, Hisako Hashimoto|2025|Chem.Commun.|61|2273|doi:10.1039/D4CC05485G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k0gvx
title: CCDC 2353949: Experimental Crystal Structure Determination

description: Related Article: Mahesh Ranga, Arun Kumar Modini, Anil Kumar Nallajarla, Raju Doddipalla, Muralidharan Kaliyaperumal, Anandarup Goswami|2025|J.Mol.Struct.|1326|141095|doi:10.1016/j.molstruc.2024.141095
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k0gwy
title: CCDC 2353950: Experimental Crystal Structure Determination

description: Related Article: Mahesh Ranga, Arun Kumar Modini, Anil Kumar Nallajarla, Raju Doddipalla, Muralidharan Kaliyaperumal, Anandarup Goswami|2025|J.Mol.Struct.|1326|141095|doi:10.1016/j.molstruc.2024.141095
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kqnsr
title: CCDC 2375275: Experimental Crystal Structure Determination

description: Related Article: Giammarco Maria Romano, Yschtar Tecla Simonini Steiner, Francesco Bartoli, Luca Conti, Eleonora Macedi, Carla Bazzicalupi, Patrizia Rossi, Paola Paoli, Massimo Innocenti, Andrea Bencini, Matteo Savastano|2025|Dalton Trans.|54|1689|doi:10.1039/D4DT02415J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kqnts
title: CCDC 2375276: Experimental Crystal Structure Determination

description: Related Article: Giammarco Maria Romano, Yschtar Tecla Simonini Steiner, Francesco Bartoli, Luca Conti, Eleonora Macedi, Carla Bazzicalupi, Patrizia Rossi, Paola Paoli, Massimo Innocenti, Andrea Bencini, Matteo Savastano|2025|Dalton Trans.|54|1689|doi:10.1039/D4DT02415J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kqnwv
title: CCDC 2375278: Experimental Crystal Structure Determination

description: Related Article: Giammarco Maria Romano, Yschtar Tecla Simonini Steiner, Francesco Bartoli, Luca Conti, Eleonora Macedi, Carla Bazzicalupi, Patrizia Rossi, Paola Paoli, Massimo Innocenti, Andrea Bencini, Matteo Savastano|2025|Dalton Trans.|54|1689|doi:10.1039/D4DT02415J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.10277388
title: Natural lakes and reservoirs chlorophyll responses to drought across the conterminous United States

description: These datasets were created to quantify how natural lakes (NLs) and reservoirs (RSVRs) across the conterminous U.S. (CONUS) with different levels of hydrologic connectivity respond to drought and how natural and human factors operating at multiple spatial scales affect lake responses. The data used in this study were from the LAGOS-US research platform (Cheruvelil et al. 2021; https://doi.org/10.1002/lol2.10203) that includes lake and landscape data for 479,950 lakes ≥ 1 ha across the CONUS. 

Project title: Sun, X., Cheruvelil, K.S., Hanly, P.J., &Soranno, P.A. Lake chlorophyll responses to drought are related to lake type, connectivity, and ecological context across the conterminous United States. 

Manuscript citation: Sun, X., Cheruvelil, K.S., Hanly, P.J., &Soranno, P.A. (2025). Lake chlorophyll responses to drought are related to lake type, connectivity, and ecological context across the conterminous United States. Limnology and Oceanography. doi: 10.1002/lno.12817

Three datasets are included:

SPI.csv: Dataset contains the standard precipitation index (SPI) values from January 2009 to December 2018 for 479,950 lakes across the conterminous U.S.

full_dataset_32predictors.csv: Dataset contains the response variables (ΔZ-score-median and directions of CHL responses) and 32 predictors (excluding lake maximum depth) for 62,927 lakes across the conterminous U.S.

depth_subset_33predictors.csv: Dataset contains the response variables (ΔZ-score-median and directions of CHL responses) and 33 predictors (including lake maximum depth) for 8,994 lakes across the conterminous U.S.

Some data were transformed and some variable names in the dataset are different from the names in the manuscript. Please see the Metadata file for the transformation and conversion of variable names. The 'lagoslakeid' (LAGOS-US unique identifier for each lake) is included in the dataset as a variable but was not used as a predictor in analyses.
DOI: 10.5281/zenodo.10277389
title: Natural lakes and reservoirs responses to drought across the conterminous United States

description: These datasets were created to quantify how natural lakes (NLs) and reservoirs (RSVRs) across the conterminous U.S. (CONUS) with different levels of hydrologic connectivity respond to drought and how natural and human factors operating at multiple spatial scales affect lake responses. The data used in this study were from the LAGOS-US research platform (Cheruvelil et al. 2021; https://doi.org/10.1002/lol2.10203) that includes lake and landscape data for 479950 lakes ≥ 1 ha across the CONUS. 
Project title: Sun, X., Cheruvelil, K.S., Hanly, P.J., &Soranno, P.A. Connectivity and ecological context affect natural lake and reservoir responses to drought across the conterminous United States.
Four datasets are included:
SPI.csv: Dataset contains the standard precipitation index (SPI) values from January 2009 to December 2018 for 479950 lakes across the conterminous U.S.
predictors_untransformed.csv: Dataset contains the untransformed data of 32 predictors (excluding lake maximum depth) for 62927 lakes across the conterminous U.S.
full_dataset_32predictors.csv: Dataset contains the response variables (ΔZ-score-median and directions of CHL responses) and 32 predictors (excluding lake maximum depth) for 62927 lakes across the conterminous U.S.
depth_subset_33predictors.csv: Dataset contains the response variables (ΔZ-score-median and directions of CHL responses) and 33 predictors (including lake maximum depth) for 8994 lakes across the conterminous U.S.
Some data were transformed and some variable names in the dataset are different from the names in the manuscript. Please see the Metadata file for the transformation and conversion of variable names. The 'lagoslakeid' (LAGOS-US unique identifier for each lake) is included in the dataset as a variable but was not used as a predictor in analyses.
DOI: 10.5281/zenodo.11244005
title: Natural lakes and reservoirs chlorophyll responses to drought across the conterminous United States

description: These datasets were created to quantify how natural lakes (NLs) and reservoirs (RSVRs) across the conterminous U.S. (CONUS) with different levels of hydrologic connectivity respond to drought and how natural and human factors operating at multiple spatial scales affect lake responses. The data used in this study were from the LAGOS-US research platform (Cheruvelil et al. 2021; https://doi.org/10.1002/lol2.10203) that includes lake and landscape data for 479,950 lakes ≥ 1 ha across the CONUS. 

Project title: Sun, X., Cheruvelil, K.S., Hanly, P.J., &Soranno, P.A. Lake chlorophyll responses to drought are related to lake type, connectivity, and ecological context across the conterminous United States. 

Manuscript citation: Sun, X., Cheruvelil, K.S., Hanly, P.J., &Soranno, P.A. (2025). Lake chlorophyll responses to drought are related to lake type, connectivity, and ecological context across the conterminous United States. Limnology and Oceanography. doi: 10.1002/lno.12817

Three datasets are included:

SPI.csv: Dataset contains the standard precipitation index (SPI) values from January 2009 to December 2018 for 479,950 lakes across the conterminous U.S.

full_dataset_32predictors.csv: Dataset contains the response variables (ΔZ-score-median and directions of CHL responses) and 32 predictors (excluding lake maximum depth) for 62,927 lakes across the conterminous U.S.

depth_subset_33predictors.csv: Dataset contains the response variables (ΔZ-score-median and directions of CHL responses) and 33 predictors (including lake maximum depth) for 8,994 lakes across the conterminous U.S.

Some data were transformed and some variable names in the dataset are different from the names in the manuscript. Please see the Metadata file for the transformation and conversion of variable names. The 'lagoslakeid' (LAGOS-US unique identifier for each lake) is included in the dataset as a variable but was not used as a predictor in analyses.
DOI: 10.15468/dl.wkpf5q
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salamandra lanzai Nascetti, Andreone, Capula & Bullini, 1988",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006718-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.784da4
title: Occurrence Download

description: A dataset containing 1162 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-75.1405 -17.28033,-70.44711 -17.28033,-70.44711 -15.2188,-75.1405 -15.2188,-75.1405 -17.28033))",
 "HasGeospatialIssue is false",
 "TaxonKey is Troglodytes aedon Vieillot, 1809",
 "Year 2021-2025"
 ]
}

 The dataset includes 1162 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006717-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2sdpaq
title: Occurrence Download

description: A dataset containing 865 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Oplismenus compositus (L.) P.Beauv."
 ]
}

 The dataset includes 865 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006720-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f5455b
title: Occurrence Download

description: A dataset containing 161 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Discoglossus sardus Tschudi, 1837",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 161 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006721-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4e472t
title: Occurrence Download

description: A dataset containing 76590105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 76590105 records from 5797 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006623-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jftwxb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Abies balsamea",
 "HasCoordinate is true",
 "Country is Spain"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009026-250920141307145/datasets/export for details.
DOI: 10.15468/dl.zpncpt
title: Occurrence Download

description: A dataset containing 5899 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Indigofera suffruticosa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 5899 records from 365 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009027-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f9p93g
title: Occurrence Download

description: A dataset containing 119897 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Specimen, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Conidae"
 ]
}

 The dataset includes 119897 records from 266 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008986-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17163335
title: virus lncRNA BAM files
DOI: 10.5281/zenodo.17163336
title: virus lncRNA BAM files
DOI: 10.15468/dl.24fj94
title: Occurrence Download

description: A dataset containing 1352 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parmentiera aculeata",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1352 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009029-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17183007
title: Loop extrusion creates rare, long-lived encounters underlying enhancer-promoter communication

description: The dataset contains the tracking data used in the paper: Loop extrusion creates rare, long-lived encounters underlying enhancer-promoter communication.

Each file represent all tracks from one cell-line. 

The dataframes are composed as follow:



frame: the frame index

dx_corrected: the displacement in the x direction corrected for chromatic aberration in um

dy_corrected: the displacement in the y direction corrected for chromatic aberration in um

dz_corrected: the displacement in the z direction corrected for chromatic aberration in um

dx,dy,dz: the displacements in the x,y and z direction not corrected for chromatic aberration in um

dates: the dates at which the data was collected

depletion: the depletion condition either wt or dtag (untreated or treated)

unique_id: unique identifier for the track

cell_type: the cell line name
DOI: 10.15472/kbmphz
title: Caracterización de fauna y flora del humedal Cañasgordas de Cali, Valle del Cauca

description: Caracterización biológica de fauna (Mamíferos, aves, peces, reptiles, anfibios, grupos hidrobiológicos) y flora del humedal Cañasgordas del municipio de Cali, Valle del Cauca, como parte de la ejecución del convenio de asociación No. 116-2016 entre la Corporación Autónoma Regional del Valle del Cauca – CVC y la Corporación para la Gestión Ambiental Biodiversa.En este recurso se presentan 159 registros observados entre febrero y marzo del 2017. Los especímenes se encuentran agrupados en 46 ordenes y 68 familias de 16 clases.
DOI: 10.15468/dl.we9csz
title: Occurrence Download

description: A dataset containing 24587096 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.occurrencestatus = 'PRESENT'
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 24587096 records were derived from 61182 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008981-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.