cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5qz22t6x
title: MassIVE MSV000093355 - SERBP1 interactome defines its novel regulatory roles in the cytoplasm and nucleus in conjunction with PARP1-, G-quadruplex- and PAR-binders - DIA-MS data
title: Background RNA binding proteins (RBPs) containing intrinsically disordered regions (IDRs) are present in diverse molecular complexes where they function as dynamic regulators. Their characteristics allow liquid-liquid phase separation (LLPS) and formation of membraneless organelles or molecular condensates such as stress granules and nucleoli. IDR-RBPs are particularly relevant in the nervous system, regulating brain function, neurogenesis and synapse plasticity. Their dysfunction is associated with neurodegenerative diseases and brain tumor development. SERBP1 is a unique member of this group, being mostly disordered and lacking canonical RNA-binding domains. We have previously defined SERBP1 as an oncogenic factor in glioblastoma. Here, we investigated the SERBP1 interactome using a proteomics approach. Results We defined novel roles for SERBP1 in splicing, cell division, DNA repair and ribosomal biogenesis based on the protein's interactome and functional analyses. SERBP1 preferentially interacts with other G-quadruplex (G4) binders, implicated in different stages of gene expression, suggesting that G4 binding is a critical component of SERBP1 function in different settings. Similarly, we identified important associations between SERBP1 and PARP1/polyADP-ribosylation (PARylation). SERBP1 interacts with PARP1 and its associated factors and influences PARylation. Moreover, SERBP1 and most of its associated proteins get PARylated and/or bind to PAR, indicating that SERBP1 is present in regulatory complexes that are built on PAR binding. Finally, we determined that SERBP1 is potentially implicated in Alzheimer's where it is highly expressed and present in pathological stress granules and Tau aggregates. Conclusion Our study established SERBP1 as a multi-functional protein that participates in distinct regulatory complexes assembled via G4- and PAR-binding.
DOI: 10.7284/138340
title: Multiplexed data collected during research cruise AE1831 using a BIOS METOC instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/138341
title: Multiplexed data collected during research cruise AE1831 using a BIOS METOC instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/138342
title: Multiplexed data collected during research cruise AE1831 using a BIOS METOC instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/138343
title: Multiplexed data collected during research cruise AE1831 using a BIOS METOC instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132122
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AE1831 using a Hawaii UHDAS instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132123
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AE1831 using a SeaBird SBE-911+ instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.10102897
title: Biomarkers of neurodegeneration in isolated and antidepressant-related REM sleep behavior disorder.

description: Dataset relative to the manuscript "Biomarkers of neurodegeneration in isolated and antidepressant-related REM sleep behavior disorder."
DOI: 10.5281/zenodo.10102898
title: Biomarkers of neurodegeneration in isolated and antidepressant-related REM sleep behavior disorder.

description: Dataset relative to the manuscript "Biomarkers of neurodegeneration in isolated and antidepressant-related REM sleep behavior disorder."
DOI: 10.7284/138356
title: Multiplexed data collected during research cruise AE1836 using a BIOS METOC instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/138357
title: Multiplexed data collected during research cruise AE1836 using a BIOS METOC instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/138358
title: Multiplexed data collected during research cruise AE1836 using a BIOS METOC instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/138359
title: Multiplexed data collected during research cruise AE1836 using a BIOS METOC instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132132
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AE1836 using a Hawaii UHDAS instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132133
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AE1836 using a SeaBird SBE-911+ instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.10105169
title: DFT-predicted equilibrium structures of Ir(III) complexes for halogen bond-assisted chemo-sensors

description: Fully relaxed equilibrium structures of IrF-XB (without chloride anion coordinated by halogen bonding) as well as IrF-XBCl (with chloride anion coordinated by halogen bonding), IrF-XBBr, IrF-XB-Acetate and (IrF-XB)2-Acetate as predicted at the DFT level of theory (B3LYP/def2-SVP) including D3BJ dispersion correction and implicit solvent effects (acetonitrile). All investigated Ir(III)-based molecular sensors were optimized in singlet and triplet multiplicity in order to (subsequently) evaluate the Franck-Condon photophysics as well as the properties of the emissive triplet state. The multiplicity is indicated in the filename.
DOI: 10.5281/zenodo.7304575
title: DFT-predicted equilibrium structures of Ir(III) complexes for halogen bond-assisted chemo-sensors

description: Fully relaxed equilibrium structures of IrF-XB (without chloride anion coordinated by halogen bonding) as well as IrF-XBCl (with chloride anion coordinated by halogen bonding), IrF-XBBr, IrF-XB-Acetate and (IrF-XB)2-Acetate as predicted at the DFT level of theory (B3LYP/def2-SVP) including D3BJ dispersion correction and implicit solvent effects (acetonitrile). All investigated Ir(III)-based molecular sensors were optimized in singlet and triplet multiplicity in order to (subsequently) evaluate the Franck-Condon photophysics as well as the properties of the emissive triplet state. The multiplicity is indicated in the filename.
DOI: 10.5281/zenodo.7304576
title: DFT-predicted equilibrium structures of Ir(III) complexes for halogen bond-assisted chemo-sensors

description: Fully relaxed equilibrium structures of <strong>IrF-XB</strong> (without chloride anion coordinated by halogen bonding) and <strong>IrF-XBCl</strong> (with chloride anion coordinated by halogen bonding) as predicted at the DFT level of theory (B3LYP/def2-SVP) including D3BJ dispersion correction and implicit solvent effects (acetonitrile). Both Ir(III)-based molecular sensors were optimized in singlet and triplet multiplicity in order to (subsequently) evaluate the Franck-Condon photophysics as well as the properties of the emissive triplet state. The multiplicity is indicated in the filename.
DOI: 10.5281/zenodo.10105133
title: CITIZENSHIP BEHAVIOR QUESTIONNAIRE (CBQ)

description: This document is a citizenship behaviour questionnaire. This document consists of citizenship behaviour and the perception about democracy questions. This document was given to University students in Indonesia.
DOI: 10.5281/zenodo.8076492
title: CITIZENSHIP BEHAVIOR QUESTIONNAIRE (CBQ)

description: This document is a citizenship behaviour questionnaire. This document consists of citizenship behaviour and the perception about democracy questions. This document was given to University students in Indonesia.
DOI: 10.5281/zenodo.8076493
title: CITIZENSHIP BEHAVIOR QUESTIONNAIRE (CBQ)

description: This document is a citizenship behaviour questionnaire. This document consists of citizenship behaviour and the perception about democracy questions. This document was given to University students in Indonesia.
DOI: 10.5281/zenodo.8161168
title: CITIZENSHIP BEHAVIOR QUESTIONNAIRE (CBQ)

description: This document is a citizenship behaviour questionnaire. This document consists of citizenship behaviour and the perception about democracy questions. This document was given to University students in Indonesia.
DOI: 10.5281/zenodo.10105475
title: TALABALARDA KOMPETENSIYAVIY YONDASHUVNING  PEDAGOGIK-PSIXOLOGIK JIHATLARI
DOI: 10.5281/zenodo.10105476
title: TALABALARDA KOMPETENSIYAVIY YONDASHUVNING  PEDAGOGIK-PSIXOLOGIK JIHATLARI
DOI: 10.25345/c5m61c130
title: MassIVE MSV000093356 - GNPS_HILIC_Mechanisms of myocarditis and progressive cardiac fibrosis in chronic Trypanosoma cruzi infection; - detection of metabolites during the drug administration in the mice model.
title: Chagas disease is caused by Trypanosoma cruzi which affects approximately 6.5 million people worldwide. Chronic infection with the parasite results in persistent low-grade myocarditis and progressive fibrosis, which results in significant cardiac dysfunction called Chronic Chagasic Cardiomyopathy (CCC). The victims suffering from CCC have higher cardiac inflammation, fibrosis, and circulating inflammatory and fibrotic markers that correlate with disease severity. The study aims to detect metabolites in association with the different treatment options offered during the state of the infection in the mice model, using uninfected stages as quality checks. By using HILIC columns on LCMS, the metabolites were detected. The portions of heart and liver harvested from the T. cruzi-infected mice were lysed and extracted at both aqueous and organic phases. The extracts were seeded in 96 well plates, dried, dissolved in re-suspension diluent and LCMS run using the above-mentioned column.
DOI: 10.25418/crick.23925252
title: Data for reproducing results from the manuscript "Vitamin B5 supports Myc oncogenic metabolism and tumour progression in breast cancer"

description: DATA_for_Kreuzaler_etal_Scripts contains input processed data files for the mass spectrometry imaging data used in the manuscript "Vitamin B5 supports Myc oncogenic metabolism and tumour progression in breast cancer". <br> The input files are arranged according to different studies and are provided as HDF5 formatted binary files (*.h5). Individual files consist of processed datacubes as a matrix with rows corresponding to pixels and columns corresponding to m/z features. It also includes dimension of the total image as height x width and a list of m/z. <br> For each study, tissue labels are provided as R data file (*.rds). It consists of tumour-type labels as a matrix pixel matched with the processed datacube. <br> Additionally following datasets are also available: Immunohistochemistry (IHC) data for PDX and human biopsy samples. Raw GC-MS data for WM Tumours
DOI: 10.5281/zenodo.10105283
title: Data from: Bee species richness through time in an urbanizing landscape of the southeastern USA

description: Authors: Selina A. Ruzi, Elsa Youngsteadt, April Hamblin Cherveny, Jessica Kettenbach, Hannah K. Levenson, Danesha Seth Carley, Jaime A. Collazo, and Rebecca E. Irwin
*Corresponding author: Selina A. Ruzi, sruzi24@gmail.com
Abstract: Compared to non-urban environments, cities host ecological communities with altered taxonomic diversity and functional trait composition. However, we know little about how these urban changes take shape over time. Using historical bee (Apoidea: Anthophila) museum specimens supplemented with online repositories and researcher collections, we investigated whether bee species richness tracked urban and human population growth over the past 118 years. We also determined which species were no longer collected, whether those species shared certain traits, and if collector behavior changed over time. We focused on Wake County, North Carolina, USA where human population size has increased over 16 times over the last century along with the urban area within its largest city, Raleigh, which has increased over four times. We estimated bee species richness with occupancy models, and rarefaction and extrapolation curves to account for imperfect detection and sample coverage. To determine if bee traits correlated with when species were collected, we compiled information on native status, nesting habits, diet breadth, and sociality. We used non-metric multidimensional scaling to determine if individual collectors contributed different bee assemblages over time. In total, there were 328 species collected in Wake County. We found that although bee species richness varied, there was no clear trend in bee species richness over time. However, recent collections (since 2003) were missing 195 species, and there was a shift in trait composition, particularly lost species were below-ground nesters. The top collectors in the dataset differed in how often they collected bee species, but this was not consistent between historic and contemporary time periods; some contemporary collectors grouped closer together than others, potentially due to focusing on urban habitats. Use of historical collections and complimentary analyses can fill knowledge gaps to help understand temporal patterns of species richness in taxonomic groups that may not have planned long-term data.
 
Usage notes: To access the R project, please go to https://github.com/sruzi24/Ruzi_etal_temporal_bee_richness
DOI: 10.5281/zenodo.10105284
title: Data from: Bee species richness through time in an urbanizing landscape of the southeastern USA

description: Authors: Selina A. Ruzi, Elsa Youngsteadt, April Hamblin Cherveny, Jessica Kettenbach, Hannah K. Levenson, Danesha Seth Carley, Jaime A. Collazo, and Rebecca E. Irwin
*Corresponding author: Selina A. Ruzi, sruzi24@gmail.com
Abstract: Compared to non-urban environments, cities host ecological communities with altered taxonomic diversity and functional trait composition. However, we know little about how these urban changes take shape over time. Using historical bee (Apoidea: Anthophila) museum specimens supplemented with online repositories and researcher collections, we investigated whether bee species richness tracked urban and human population growth over the past 118 years. We also determined which species were no longer collected, whether those species shared certain traits, and if collector behavior changed over time. We focused on Wake County, North Carolina, USA where human population size has increased over 16 times over the last century along with the urban area within its largest city, Raleigh, which has increased over four times. We estimated bee species richness with occupancy models, and rarefaction and extrapolation curves to account for imperfect detection and sample coverage. To determine if bee traits correlated with when species were collected, we compiled information on native status, nesting habits, diet breadth, and sociality. We used non-metric multidimensional scaling to determine if individual collectors contributed different bee assemblages over time. In total, there were 328 species collected in Wake County. We found that although bee species richness varied, there was no clear trend in bee species richness over time. However, recent collections (since 2003) were missing 195 species, and there was a shift in trait composition, particularly lost species were below-ground nesters. The top collectors in the dataset differed in how often they collected bee species, but this was not consistent between historic and contemporary time periods; some contemporary collectors grouped closer together than others, potentially due to focusing on urban habitats. Use of historical collections and complimentary analyses can fill knowledge gaps to help understand temporal patterns of species richness in taxonomic groups that may not have planned long-term data.
 
Usage notes: To access the R project, please go to https://github.com/sruzi24/Ruzi_etal_temporal_bee_richness
DOI: 10.5281/zenodo.10092557
title: Data for "Modular Bibliographical Profiling of Historic Book Reviews"

description: This dataset supports the research paper, ""Modular Bibliographical Profiling of Historic Book Reviews." The paper examines different methods of predicting bibliographical details (e.g. author, title, and publisher) of books under review in a corpus of approximately 1,100 historical book reviews. The dataset is comprised of book reviews from ProQuest's American Periodicals Series (APS). This kind of bibliographical profiling is often characterized as a Natural Language Processing (NLP) or Named Entity Recognition (NER) task, but it can be more specifically described as a two-part Named Entity Linking (NEL) task, beginning with a feature extraction stage followed by one of several available matching or classification methods. An attempt has been made to formalize constraints for modular bibliographical profiling (MBP) and shed light on some important choices that are often glossed over or obscured by digital humanities (DH) practitioners. Applying these constraints, the paper evaluates combinations of feature selection (naive bag-of-words [BOW], rule-based feature extraction, and NER using a pre-trained model) with a standardized similarity-based matching strategy (cosine similarity). All tasks are performed on derived text data (term frequency tables), so that data can be shared and all methods can be used on materials available only in non-consumptive formats. These comparisons suggest that naive BOW can perform quite robustly, and that using even a basic pretrained NER model in conjunction with a BOW approach may reduce false positives.
DOI: 10.5281/zenodo.10092558
title: Data for "Modular Bibliographical Profiling of Historic Book Reviews"

description: This dataset supports the research paper, ""Modular Bibliographical Profiling of Historic Book Reviews." The paper examines different methods of predicting bibliographical details (e.g. author, title, and publisher) of books under review in a corpus of approximately 1,100 historical book reviews. The dataset is comprised of book reviews from ProQuest's American Periodicals Series (APS). This kind of bibliographical profiling is often characterized as a Natural Language Processing (NLP) or Named Entity Recognition (NER) task, but it can be more specifically described as a two-part Named Entity Linking (NEL) task, beginning with a feature extraction stage followed by one of several available matching or classification methods. An attempt has been made to formalize constraints for modular bibliographical profiling (MBP) and shed light on some important choices that are often glossed over or obscured by digital humanities (DH) practitioners. Applying these constraints, the paper evaluates combinations of feature selection (naive bag-of-words [BOW], rule-based feature extraction, and NER using a pre-trained model) with a standardized similarity-based matching strategy (cosine similarity). All tasks are performed on derived text data (term frequency tables), so that data can be shared and all methods can be used on materials available only in non-consumptive formats. These comparisons suggest that naive BOW can perform quite robustly, and that using even a basic pretrained NER model in conjunction with a BOW approach may reduce false positives.
DOI: 10.5281/zenodo.10105630
title: siren_reticulata_decontaminated_FSCR.fasta.gz

description: siren_reticulata_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.10105629
title: siren_reticulata_decontaminated_FSCR.fasta.gz

description: siren_reticulata_decontaminated_FSCR.fasta.gz
DOI: 10.6084/m9.figshare.24543298
title: Island characteristics and species traits.xlsx

description: The data is for the paper entitled "Effects of anthropogenic, biogeographical and environmental factors on insular amphibian diversity in the Anthropocene".
DOI: 10.6084/m9.figshare.24543298.v1
title: Island characteristics and species traits.xlsx

description: The data is for the paper entitled "Effects of anthropogenic, biogeographical and environmental factors on insular amphibian diversity in the Anthropocene".
DOI: 10.5281/zenodo.10105574
title: Source Data for Manuscript: "Retrievals Applied To A Decision Tree Framework Can Characterize Earth-like Exoplanet Analogs"

description: This dataset accompanies the manuscript entitled: "Retrievals Applied To A Decision Tree Framework Can Characterize Earth-like Exoplanet Analogs", which was accepted for publication in the Planetary Science Journal. Included are the source files for all figures included in the paper.
DOI: 10.5281/zenodo.10105573
title: Source Data for Manuscript: "Retrievals Applied To A Decision Tree Framework Can Characterize Earth-like Exoplanet Analogs"

description: This dataset accompanies the manuscript entitled: "Retrievals Applied To A Decision Tree Framework Can Characterize Earth-like Exoplanet Analogs", which was accepted for publication in the Planetary Science Journal. Included are the source files for all figures included in the paper.
DOI: 10.5281/zenodo.10105218
title: WorldEvents

description: This collection compiles the relevant events that have occurred throughout the history of humanity, organized by year, month, day of the month, and day of the week. It also includes the type of event, whether it is a historical event, the birth or death of a famous person, a music chart, etc.
 
Este conjunto recoge los eventos relevantes que han sucedido, a lo largo de la historia de la humanidad, por año, mes, día del mes y día de la semana. También recoge el tipo de evento, es decir, si es un evento histórico, un nacimiento o muerte de una persona famosa, lista de música, etc.
DOI: 10.5281/zenodo.10105219
title: WorldEvents

description: This collection compiles the relevant events that have occurred throughout the history of humanity, organized by year, month, day of the month, and day of the week. It also includes the type of event, whether it is a historical event, the birth or death of a famous person, a music chart, etc.
 
Este conjunto recoge los eventos relevantes que han sucedido, a lo largo de la historia de la humanidad, por año, mes, día del mes y día de la semana. También recoge el tipo de evento, es decir, si es un evento histórico, un nacimiento o muerte de una persona famosa, lista de música, etc.
DOI: 10.5255/ukda-sn-856776
title: Metadata for the Beastly Business Project: Illegal Wildlife Trade, 2021-2023

description: The Beastly Business Project focused on IWT in European species, specifically the trade in European brown bears, European eels and songbirds. It delivered new empirical data and a novel analytical framework that synthesises the strengths of two key approaches – political ecology and green criminology. Europe is a key area for sourcing, consuming and transporting wildlife, but this is overlooked in academic and policy debates; instead IWT tends to be presented as a problem of Africa and Asia. In policies to tackle IWT Europe is often identified only as a transit route for wildlife products trafficked from source (typically assumed to be Africa) to consumer (typically assumed to be Asia). This misses the importance of IWT within Europe and in European species. Focusing on IWT in Europe is important because it is a key driver of biodiversity loss, and it has become a prominent policy issue in the EU. Due to ethical constrains the data cannot be shared outside of the project group.