cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.z3ub83
title: Occurrence Download

description: A dataset containing 1016014 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OrderKey is Anura",
 "Country is Australia",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "Year is greater than or equal to 2003",
 "Year is less than or equal to 2025",
 {
 "not" : {
 "TaxonKey" : [
 "is Rhinella marina"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation, Material sample, Material citation, Specimen)"
 ]
 }
 },
 {
 "not" : {
 "Issue" : [
 "is one of (Coordinate invalid, Geodetic datum invalid, Footprint SRS invalid, Country coordinate mismatch, Country invalid, Continent invalid, Presumed negated longitude, Presumed negated latitude, Recorded date mismatch, Recorded date invalid, Recorded date unlikely, Taxon match fuzzy, Taxon match higher rank, The scientific name ID was not found in the checklist, The taxon ID was not found in the checklist, Elevation min max swapped, Elevation non numeric, Modified date invalid, Identified date unlikely, Basis of record invalid, Type status invalid, Multimedia date invalid, Multimedia URI invalid, References URI invalid, Individual count invalid, Individual count conflicts with occurrence status, Occurrence status inferred from individual count, Occurrence status inferred from basis of record, Ambiguous institution, Ambiguous collection, Institution match none, Collection match none, Institution match fuzzy, Collection match fuzzy, Institution collection mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 1016014 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000709-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.gg0nk
title: Data from: Generation of a monoclonal antibody recognizing the heavily glycosylated CD45 Protein and its application on identifying circulating tumor cells

description: Here, we provide direct evidence that using recombinant proteins expressed
 in eukaryotic cells as antigen is a practical way to generate monoclonal
 antibodies (mAbs) against heavily glycosylated proteins. Heavily
 glycosylated proteins are typically difficult targets for mAb generation,
 being limited by unsatisfactory affinity and low specificity. Using the
 heavily glycosylated CD45 protein as an example, we demonstrate the entire
 process of expressing the protein in eukaryotic cells and using it as an
 antigen to generate CD45-targeting mAbs in mice. The mAbs generated showed
 robust affinity and specificity, which are crucial factors for
 differentiate circulating tumor cells from white blood cells in human
 breast cancer patient samples. Only 1 cell fusion and 2 cyclic sub-cloning
 steps were necessary before mAbs with satisfactory performance were
 obtained.
description: PLos
 OneComplete
 Initial Data .xlsx
DOI: 10.5061/dryad.14m55
title: Data from: Stress modulation of cellular metabolic sensors: interaction of stress from temperature and rainfall on the intertidal limpet Cellana toreuma

description: In the natural environment, organisms are exposed to large variations in
 physical conditions. Quantifying such physiological responses is, however,
 often done in laboratory acclimation studies, in which usually only a
 single factor is varied. In contrast, field acclimatization may expose
 organisms to concurrent changes in several environmental variables. The
 interactions of these factors may have strong effects on organismal
 function. In particular, rare events that occur stochastically and have
 relatively short duration may have strong effects. The present experiments
 studied levels of expression of several genes associated with cellular
 stress and metabolic regulation in a field population of limpet Cellana
 toreuma that encountered a wide range of temperatures plus periodic rain
 events. Physiological responses to these variable conditions were
 quantified by measuring levels of mRNA of genes encoding heat shock
 proteins (Hsps) and metabolic sensors (AMPKs and Sirtuin 1). Our results
 reveal high ratios of individuals in up-regulation group of stress-related
 gene expression at high temperature and rainy days, indicating the
 occurrence of stress from both prevailing high summer temperatures and
 occasional rainfall during periods of emersion. At high temperature,
 stress due to exposure to rainfall may be more challenging than heat
 stress alone. The highly variable physiological performances of limpets in
 their natural habitats indicate the possible differences in capability for
 physiological regulation among individuals. Our results emphasize the
 importance of studies of field acclimatization in unravelling the effects
 of environmental change on organisms, notably in the context of multiple
 changes in abiotic factors that are accompanying global change.
description: Abundance
 dataThe abundance of the
 limpet Cellana toreuma in the study site from July 2012 to April 2013. The
 total numbers of limpets in the two transects were recorded from 1.0m to
 5.0 m above chart datum.Precipitation
 dataThe “relevant
 precipitation” data recorded from September 2011 to April
 2013.Raw data of operative
 body temperatureDaily maximum, mean and
 minimum operative body temperatures in limpets from a mid-intertidal
 south-facing rocky slope (2.5-3.0 m above CD) measured using Robolimpets,
 as described by Lima and Wethey (2009). Data were collected every 30 min
 between August 2011 and May 2013.Raw gene expression and
 body temperature dataLevels of hsp70, hsp90,
 hsp90, ampkα, ampkβ and sirt1 mRNA in Cellana toreuma and the body
 temperature. Samples were collected on different dates from September 2011
 to April 2013. When the sample was sampled, a thermocouple was inserted
 into the shells and the body temperature of each individual was recorded
 using a thermometer (Fluke 54II, Fluke, WA, USA).Raw gene expression
 data.docx
DOI: 10.5061/dryad.t4p7j52
title: Data from: Global connectivity patterns of the notoriously invasive mussel, Mytilus galloprovincialis Lmk using archived CO1 sequence data.

description: The invasive mussel, Mytilus galloprovincialis has established invasive
 populations across the globe and in some regions, have completely
 displaced native mussels through competitive exclusion. The objective of
 this study was to elucidate global connectivity patterns of M.
 galloprovincialis strictly using archived cytochrome c oxidase 1 sequence
 data obtained from public databases. Through exhaustive mining and the
 development of a systematic workflow, we compiled the most comprehensive
 global CO1 dataset for M. galloprovincialis thus far, consisting of 209
 sequences representing 14 populations. Haplotype networks were constructed
 and genetic differentiation was assessed using pairwise Analysis of
 Molecular Variance. There was significant genetic structuring across
 populations with significant geographic patterning of haplotypes. In
 particular, South Korea, South China, Turkey and Australasia appear to be
 the most genetically isolated populations. However, we were unable to
 recover a northern and southern hemisphere grouping for M.
 galloprovincialis as was found in previous studies. These results suggest
 a complex dispersal pattern for M. galloprovincialis driven by several
 contributors including both natural and anthropogenic dispersal mechanisms
 along with the possibility of potential hybridization and ancient
 vicariance events.
description: Mining Code for Mytilus
 galloprovincialisIncludes C++ code used
 for automated search of Mytilus galloprovincialis in GenBank database.
 Also includes example output file and readme file with list of programs
 that can read .cpp files.
DOI: 10.5061/dryad.vc1q1
title: Data from: Variation in thermal performance and reaction norms among populations of Drosophila melanogaster

description: The major goal of evolutionary thermal biology is to understand how
 variation in temperature shapes phenotypic evolution. Comparing thermal
 reaction norms among populations from different thermal environments
 allows us to gain insights into the evolutionary mechanisms underlying
 thermal adaptation. Here, we have examined thermal adaptation in six wild
 populations of the fruit fly (Drosophila melanogaster) from markedly
 different natural environments by analyzing thermal reaction norms for
 fecundity, thorax length, wing area and ovariole number under ecologically
 realistic fluctuating temperature regimes in the laboratory. Contrary to
 expectation, we found only minor differences in the thermal optima for
 fecundity among populations. Differentiation among populations was mainly
 due to differences in absolute (and partly also relative) thermal
 fecundity performance. Despite significant variation among populations in
 the absolute values of morphological traits, we observed only minor
 differentiation in their reaction norms. Overall, the thermal reaction
 norms for all traits examined were remarkably similar among different
 populations. Our results therefore suggest that thermal adaptation in D.
 melanogaster predominantly involves evolutionary changes in absolute trait
 values rather than in aspects of thermal reaction norms.
description: Raw data Klepsatel et al
 2013 EvolutionWe examined thermal
 adaptation in six wild populations of the fruit fly (Drosophila
 melanogaster) from markedly different natural environments by analyzing
 thermal performance curves or thermal reaction norms for (1) fecundity
 (absolute fecundity was defined as the mean cumulative number of eggs laid
 per female during the first ten days; relative fecundity was defined as a
 percentage of maximum absolute fecundity (set to 100%)), (2) thorax length
 (measured in mm), (3) wing area (measured in mm2), (4) wing loading
 (defined as (thorax length)3/(wing area)), (5) ovariole number (ovariole
 number was defined as the sum of the number of ovarioles in both ovaries)
 and (6) ovariole index (i.e., the ratio between ovariole number of and
 individual and its body size (~cube of thorax length)) under ecologically
 realistic fluctuating temperature regimes in the laboratory. Here we
 present the raw data for these traits/measurements; each line represents
 an individual female fly. For details on experimental design, data
 collection and statistical analysis see our paper, Klepsatel et al. (2013,
 title: "Variation in thermal performance and reaction norms among
 populations of Drosophila melanogaster"; journal: Evolution). For
 additional, more specific (sub-)datasets based on the raw data presented
 here, which we have used for particular statistical analyses, or for
 statistical analyses outputs please contact the corresponding author,
 Thomas Flatt at thomas.flatt@unil.ch
DOI: 10.5061/dryad.3dh2c
title: Data from: Low inter-basin connectivity in a facultatively diadromous fish: evidence from genetics and otolith chemistry

description: Southern smelts (Retropinna spp.) in coastal rivers of Australia are
 facultatively diadromous, with populations potentially containing
 individuals with diadromous or wholly freshwater life-histories. The
 presence of diadromous individuals is expected to reduce genetic
 structuring between river basins due to larval dispersal via the sea. We
 use otolith chemistry to distinguish between diadromous and non-diadromous
 life-histories and population genetics to examine inter-basin connectivity
 resulting from diadromy. Otolith strontium isotope (87Sr:86Sr) transects
 identified three main life history patterns: amphidromy, freshwater
 residency and estuarine/marine residency. Despite the potential for
 inter-basin connectivity via larval mixing in the marine environment, we
 found unprecedented levels of genetic structure for an amphidromous
 species. Strong hierarchical structure along putative taxonomic boundaries
 was detected, along with highly structured populations within groups using
 microsatellites (FST = 0.046 – 0.181), and mtDNA (ΦST = 0.498 – 0.816).
 The presence of strong genetic subdivision, despite the fact that many
 individuals reside in saline water during their early life-history,
 appears incongruous. However, analysis of multi-elemental signatures in
 the otolith cores of diadromous fish revealed strong discrimination
 between river basins, suggesting that diadromous fish spend their early
 lives within chemically distinct estuaries rather than the more homogenous
 marine environment, thus avoiding dispersal and maintaining genetic
 structure.
description: MEC-13-1244_msat_data_GENEPOPMEC-13-1244_msat_GENEPOP_POPULATION NAMESMEC-13-1244_mtDNA_alignment_Fig1BMEC-13-1244_otolith_transect_Sr_ratio_data
DOI: 10.5061/dryad.8dq25
title: Data from: Hyper-Theory-of-Mind in children with psychotic experiences

description: Background: Alterations in Theory-of-Mind (ToM) are associated with
 psychotic disorder. In addition, studies in children have documented that
 alterations in ToM are associated with Psychotic Experiences (PE). Our aim
 was to examine associations between an exaggerated type of ToM (HyperToM)
 and PE in children. Children with this type of alteration in ToM infer
 mental states when none are obviously suggested, and predict behaviour on
 the basis of these erroneous beliefs. Individuals with HyperToM do not
 appear to have a conceptual deficit (i.e. lack of representational
 abilities), but rather they apply their theory of the minds of others in
 an incorrect or biased way. Method: Hypotheses were tested in two studies
 with two independent samples: (i) a general population sample of 1630
 Danish children aged 11–12 years, (ii) a population-based sample of 259
 Dutch children aged 12–13 years, pertaining to a case-control sampling
 frame of children with auditory verbal hallucinations. Multinomial
 regression analyses were carried out to investigate the associations
 between PE and ToM and HyperToM respectively. Analyses were adjusted for
 gender and proxy measures of general intelligence. Results: Low ToM score
 was significantly associated with PE in sample I (OR = 1.6 95%CI 1.1–2.3
 χ2(4) = 12.42 p = 0.010), but not in sample II (OR = 0.9 95%CI 0.5–1.8
 χ2(3) = 7.13 p = 0.816). HyperToM was significantly associated with PE
 both in sample I (OR = 1.8, 95%CI 1.2–2.7 χ2(3) = 10.11 p = 0.006) and II
 (OR = 4.6, 95%CI 1.3–16.2 χ2(2) = 7.56 p = 0.018). HyperToM was associated
 particularly with paranoid delusions in both sample I (OR = 2.0, 95%CI:
 1.1–3.7% χ2(4) = 9.93 p = 0.021) and II (OR = 6.2 95%CI: 1.7–23.6% χ2(4) =
 9.90 p = 0.044). Conclusion: Specific alterations in ToM may be associated
 with specific types of psychotic experiences. HyperToM may index risk for
 developing psychosis and paranoid delusions in particular.
description: data used for
 analysesdata used for
 analysesupload plos one
 2110.sav
DOI: 10.17605/osf.io/5fae6
title: Are individual differences in social behaviour a cause or a consequence of endoparasite infection in free-ranging feral cattle?
DOI: 10.5061/dryad.r7v91
title: Data from: Are exotic plants more abundant in the introduced versus native range?

description: Many invasion hypotheses postulate that introducing species to novel
 environments allows some organisms to escape population controls within
 the native range to attain higher abundance in the introduced range.
 However, introductions may also allow inherently successful species access
 to new regions where they may flourish without increasing in abundance. To
 examine these hypotheses, we randomly surveyed semi-arid grasslands in the
 native and two introduced ranges (12,000-21,000 km2 per range) to quantify
 local abundance (mean cover per occupied plot) and occurrence (percentage
 of 1-m2 plots occupied) for 20 plant introductions that included pest and
 non-pest species. For each of these metrics, we evaluated relationships
 between abundance in the introduced versus native range 1) across all
 species and 2) according to designated pest status in the introduced
 range. We predicted that if escape from population controls primarily
 explained invader success, then these species would be more abundant in
 the introduced range; while if invader success was driven primarily by
 intrinsic species attributes, then their abundance would be correlated
 between ranges. Across all 20 invaders, we found that neither cover nor
 occurrence metrics were correlated between ranges. While cover was
 significantly higher in the introduced range, this result was driven by
 pest species. When the four pest species were excluded, cover but not
 occurrence was correlated between ranges. Interestingly, whereas cover of
 pest and non-pest species was comparably low in the native range, pest
 species cover increased 7-fold in the introduced range. Synthesis. Our
 results confirm previous findings that local abundance in the native range
 predicts local abundance in the introduced range for many introduced
 plants, suggesting that intrinsic species’ attributes may determine most
 invasion outcomes. However, we also found that some species increased in
 local abundance in the introduced range, suggesting that changes in
 biogeographic context may also play an important role. While these latter
 species were pests, the small sample size precluded strong inferences.
 Determining what underlies the success of invasive pests remains elusive
 due to their low representation among introduced species.
description: <strong>Plot level
 data for Dryad</strong> These data include plot
 cover level data for 13 plant species sampled in their introduced and
 natives ranges. Please see README tab for a description of the variables
 included.  Note that this datafile
 replaces the original, which had a problem with the column headings and
 README tab.  The revised file includes additional metadata relevant to the
 analysis and ommits ancillary columns.
description: See abstract for data collection methods.  Plot-level data
 associated with this archive were used to calculate various metrics of
 abundance, per details in the publication.
DOI: 10.5061/dryad.k1s0c7h
title: Data from: Fitness consequences of female alternative reproductive tactics in house mice (Mus musculus domesticus)

description: Alternative reproductive tactics are defined as discrete differences in
 morphological, physiological and/or behavioral traits associated with
 reproduction, which occur within the same sex and population. House mice
 provide a rare example for alternative reproductive tactics in females,
 which can either rear their young solitarily, or together with one or
 several other females in a communal nest. We assessed the fitness
 consequences of communal and solitary breeding in a wild population to
 understand how the two tactics can be evolutionarily stable. Females
 switched between the two tactics (with more than 50% of all females having
 two or more litters using both tactics), pointing towards communal and
 solitary breeding being two tactics within a single strategy and not two
 genetically determined strategies. Communal breeding resulted in reduced
 pup survival and negatively impacted female reproductive success. Older
 and likely heavier females more often reared their litters solitarily,
 indicating that females use a condition dependent strategy. Solitary
 breeding seems the more successful tactic and only younger and likely less
 competitive females might opt for communal nursing, even at the cost of
 increased pup mortality. This study emphasizes the importance of analyzing
 phenotypic plasticity and its role in cooperation in the context of female
 ARTs.
description: List of
 femalesData about wild female
 house mice (Mus musculus domesticus) collected in a free-living population
 in Switzerland. Contains information about the date of birth and death (or
 disappearance from the population), as well as the population density and
 the mean monthly temperature during the month the females were
 born.females.csvList of littersList with litters born between 2007 and 2011 in a population of free-living house mice. If known, identity of the mother (assigned through genetic parentage analysis) is given, as well as a genetic LitterID, linking all pups born by the same female at the same time (litter mates).litters.csvCommunal litters for reproductive skew analysisList with communal litters (formed by two or more females), with the corresponding calculated Binomial skew index (B), the average pair-wise value of relatedness between the females (Wang estimate) and the maximal range of age differences between the females and pups within the communal litters.communal_litters.csv
DOI: 10.15468/dl.wr5wvr
title: Occurrence Download

description: A dataset containing 355217 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paris"
 ]
}

 The dataset includes 355217 records from 1297 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000687-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14668552
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.6084/m9.figshare.31198330
title: few-shot_breast_MERFISH_100k

description: This is the checkpoint for the fine-tuned model with 100k example cells in the MERFISH platform.Train for 12k steps with LoRA
DOI: 10.6084/m9.figshare.31198330.v1
title: few-shot_breast_MERFISH_100k

description: This is the checkpoint for the fine-tuned model with 100k example cells in the MERFISH platform.Train for 12k steps with LoRA
DOI: 10.6084/m9.figshare.31198336
title: few-shot_colon_MERFISH_100k

description: This is the checkpoint for the fine-tuned model with 100k example cells in the MERFISH platform.Train for 14k steps with LoRA
DOI: 10.6084/m9.figshare.31198336.v1
title: few-shot_colon_MERFISH_100k

description: This is the checkpoint for the fine-tuned model with 100k example cells in the MERFISH platform.Train for 14k steps with LoRA
DOI: 10.15468/dl.uf8xyt
title: Occurrence Download

description: A dataset containing 6208 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Ambystoma laterale"
 ]
 },
 "HasCoordinate is TRUE",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2024",
 "DecimalLatitude is greater than or equal to 39.800293049929145",
 "DecimalLatitude is less than or equal to 49.3755163493321",
 "DecimalLongitude is greater than or equal to -92.87017281670407",
 "DecimalLongitude is less than or equal to -73.31916441842102",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 6208 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000831-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ghgbf
title: Occurrence Download

description: A dataset containing 248 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is University of Michigan Museum of Zoology, Division of Mammals",
 "TaxonKey is Vulpes vulpes"
 ]
}

 The dataset includes 248 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000832-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.