cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.12jm63z0r
title: Data from: Correlated variability in primate superior colliculus depends on functional class

description: Information read-out from populations of neurons depends strongly on the
 correlated variability within a population, termed rSC (spike count
 correlations). Traditionally, rSC is reported as a single value for a
 population of neurons comprising a brain area. However, single values,
 like summary statistics, can obscure underlying features of the
 constituent elements. We predict that in brain areas consisting of
 distinct subpopulations of neurons, different subpopulations will exhibit
 distinct levels of rSC not captured by the population rSC. We tested this
 idea by recording from neurons in macaque superior colliculus (SC), a
 structure that contains several subpopulations (or classes) of neurons
 based on function. We found that during guided saccade tasks, different
 classes of neurons exhibited differing degrees of rSC, which could not be
 attributed to variations in behavior. Neurons belonging to the “Delay”
 class displayed a particularly high rSC, especially during the delay epoch
 of tasks that relied on visual working memory. Our finding that rSC
 depends on functional class, as well as the type of task, demonstrate the
 importance of taking functional subpopulations into account when
 attempting to model or infer population coding principles in primate SC,
 or other areas of the brain that contain subpopulations supporting
 specific functions.
description: See methods section of paper: https://www.biorxiv.org/content/10.1101/2021.09.15.460545v1.abstract
DOI: 10.5061/dryad.crjdfn360
title: Finite Element model data for Academic Rotor bladed-disc system

description: A computational finite element based technique is proposed for developing
 a stochastic reduced order model for rotating bladed disc with spatial
 random inhomogeneities. The spatial inhomogeneities imply the system to be
 randomly mistuned. The formulation assumes the availability of a high
 fidelity finite element (FE) model for the tuned system. The corresponding
 FE matrices are antisymmetric on account of the Coriolis forces due to
 rotation. The spatial inhomogeneities, available from limited point
 measurements on the blades, are modelled as non-Gaussian random fields
 with arbitrary distributions. A low order stochastic computational model
 is developed by projecting the FE model onto a reduced dimensional state
 space defined in terms of specified observable nodal points and expressing
 the stochasticity through an arbitrary polynomial chaos (aPC) basis. This
 model enables probabilistic quantification of the variabilities in the
 system response and estimating failure probabilities. The methodology
 enables drastic reduction in the state space and stochastic dimensions,
 addresses the practical difficulties with having limited measurable data
 points, antisymmetric FE matrices, aPC representation in complex irregular
 geometries and carrying out probabilistic analyses on industrial systems,
 at significantly reduced computational costs. The methodology is
 illustrated through an academic rotor and an industrial rotor blade.
description: The data contains in an excel file the finite element model for
 example 1 presented in the paper. The source codes in
 Matlab script for the two numerical examples are also presented
 here. People should know the basics of finite element
 method and shoud be proficient in Matlab programming.
DOI: 10.6084/m9.figshare.31168007
title: Theory of mind skill predicts anticipatory guilt-proneness in schizophrenia

description: Adaptive management of guilt and shame is regulated by social approach and withdrawal and thus relates to the quantity and quality of our social interactions. People with schizophrenia (SZ) self-report reduced guilt-proneness compared to healthy controls (HC). However, previous studies have not distinguished between anticipatory and consequential guilt, nor between guilty affect and associated action tendencies. We compared 24 SZ with 24 HC on anticipatory guilt, (TOSCA-3, GASP); consequential guilt (PFQ-2), and empathy and Theory of Mind (ToM). Differing profiles emerged: SZ reported higher consequential relative to anticipatory guilt, while HC reported the opposite pattern. SZ self-reported reduced repair and increased withdrawal compared to HC. In SZ, anticipatory guilt was predicted by empathic concern and ToM; consequential guilt by social withdrawal and ToM skill. SZ participants anticipated equal affective guilt-proneness but reduced adaptive behavioural responses to guilty feelings, resulting in more chronic guilt in daily life than would be predicted by TOSCA-3 and GASP responses. The discrepancy between emotional experience and expression may partly explain previous findings of reduced TOSCA-3 guilt-proneness, as TOSCA-3 operationalises guilt as reparative, prosocial behaviours. Results highlight perceptions of reparation potential as an intervention target, with likely downstream reductions in chronic and delusional guilt and shame.
DOI: 10.6084/m9.figshare.31168007.v1
title: Theory of mind skill predicts anticipatory guilt-proneness in schizophrenia

description: Adaptive management of guilt and shame is regulated by social approach and withdrawal and thus relates to the quantity and quality of our social interactions. People with schizophrenia (SZ) self-report reduced guilt-proneness compared to healthy controls (HC). However, previous studies have not distinguished between anticipatory and consequential guilt, nor between guilty affect and associated action tendencies. We compared 24 SZ with 24 HC on anticipatory guilt, (TOSCA-3, GASP); consequential guilt (PFQ-2), and empathy and Theory of Mind (ToM). Differing profiles emerged: SZ reported higher consequential relative to anticipatory guilt, while HC reported the opposite pattern. SZ self-reported reduced repair and increased withdrawal compared to HC. In SZ, anticipatory guilt was predicted by empathic concern and ToM; consequential guilt by social withdrawal and ToM skill. SZ participants anticipated equal affective guilt-proneness but reduced adaptive behavioural responses to guilty feelings, resulting in more chronic guilt in daily life than would be predicted by TOSCA-3 and GASP responses. The discrepancy between emotional experience and expression may partly explain previous findings of reduced TOSCA-3 guilt-proneness, as TOSCA-3 operationalises guilt as reparative, prosocial behaviours. Results highlight perceptions of reparation potential as an intervention target, with likely downstream reductions in chronic and delusional guilt and shame.
DOI: 10.5061/dryad.ns1rn8pvp
title: Dancing drives evolution of sexual size dimorphism in manakins

description: Body size mediates life history, physiology, and inter- and intra-specific
 interactions. Within species, sexes frequently differ in size, reflecting
 divergent selective pressures and/or constraints. Both sexual selection
 and differences in environmentally-mediated reproductive constraints can
 drive sexual size dimorphism, but empirically testing causes of dimorphism
 is challenging. Manakins (Pipridae), a family of Neotropical birds
 comprising ~50 species, exhibit both male- and female-biased size
 dimorphism and are distributed across gradients of precipitation and
 elevation. Males perform courtship displays ranging from simple hops to
 complex aerobatic manoeuvres. We tested associations between sexual size
 dimorphism and (a) agility and (b) environment, analysing morphological,
 behavioural, and environmental data for 22 manakin species in a
 phylogenetic framework. Sexual dimorphism in mass was most strongly
 related to agility, with males being lighter than females in species
 performing more aerial display behaviours. However, wing and tarsus length
 dimorphism were more strongly associated with environmental variables,
 suggesting that different sources of selection act on different aspects of
 body size. These results highlight both the strength of sexual selection
 in shaping morphology—even atypical patterns of dimorphism—while
 demonstrating the importance of constraints and ecological consequences of
 body size evolution.
DOI: 10.5061/dryad.sn02v6x5x
title: Individual and collective encoding of risk in animal groups

description: The need to make fast decisions under risky and uncertain conditions is a
 widespread problem in the natural world. While there has been extensive
 work on how individual organisms dynamically modify their behavior to
 respond appropriately to changing environmental conditions (and how this
 is encoded in the brain), we know remarkably little about the
 corresponding aspects of collective information processing in animal
 groups. For example, many groups appear to show increased “sensitivity” in
 the presence of perceived threat, as evidenced by the increased frequency
 and magnitude of repeated cascading waves of behavioral change often
 observed in fish schools and bird flocks under such circumstances. How
 such context-dependent changes in collective sensitivity are mediated,
 however, is unknown. Here we address this question using schooling fish as
 a model system, focusing on 2 nonexclusive hypotheses: 1) that changes in
 collective responsiveness result from changes in how individuals respond
 to social cues (i.e., changes to the properties of the “nodes” in the
 social network), and 2) that they result from changes made to the
 structural connectivity of the network itself (i.e., the computation is
 encoded in the “edges” of the network). We find that despite the fact that
 perceived risk increases the probability for individuals to initiate an
 alarm, the context-dependent change in collective sensitivity
 predominantly results not from changes in how individuals respond to
 social cues, but instead from how individuals modify the spatial
 structure, and correspondingly the topology of the network of
 interactions, within the group. Risk is thus encoded as a collective
 property, emphasizing that in group-living species individual fitness can
 depend strongly on coupling between scales of behavioral organization.
DOI: 10.5061/dryad.b2rbnzsh8
title: Photodegradation of plant litter cuticles enhances microbial decomposition by increasing uptake of non-rainfall moisture

description: Litter decomposition plays a central role in carbon cycling in terrestrial
 ecosystems worldwide. In drylands, which cover 40% of the Earth’s land
 surface, photodegradation and biotic decomposition driven by non-rainfall
 moisture are important mechanisms of litter decay, though studies have
 only recently begun examining interactions between these two processes. We
 describe a novel priming mechanism in which photodegradation and biotic
 decay of the cuticle of plant litter increases litter absorption of
 non-rainfall moisture (fog, dew, and water vapor), supporting greater
 microbial decomposition. We used several field experiments in a coastal
 fog desert and a series of in situ observations to demonstrate a
 relationship between solar radiation, cuticle integrity, water absorption
 rates, and mass loss. Experimentally attenuating solar radiation for 36
 months slowed mass loss, reduced cuticle degradation, and decreased litter
 moisture uptake relative to litter under ambient sunlight controls. In a
 separate field experiment, removing the cuticle of recently senesced grass
 tillers increased mass loss four-fold over 6 months relative to controls.
 Tillers with degraded cuticles also absorbed 3.8 times more water
 following an overnight dew event than did those with intact cuticles.
 Finally, fungal growth was consistently greater on the sun-facing side of
 in situ tillers than on the shaded side, coincident with greater cuticle
 degradation. We present a conceptual model where the cuticle of plant
 litter acts as a water-resistant barrier that is first degraded by solar
 radiation and surficial microbes, increasing litter’s ability to absorb
 enough water during non-rainfall moisture events to support substantial
 biotic decomposition inside the tissue. Considering how photodegradation
 and non-rainfall moisture are both substantial drivers of litter
 decomposition in drylands, understanding how they interact under realistic
 field conditions will help us better predict how these systems are
 responding to changing climate regimes.
DOI: 10.5061/dryad.jm63xsjcr
title: Antler detection from the sky: deer sex ratio monitoring using drone-mounted thermal infrared sensors

description: Sex differences in large mammals with sexual dimorphism are important
 ecological and evolutionary issues and key factors for wildlife
 management. To examine the potential use of drone (unmanned aerial
 vehicle; UAV) observation using thermal infrared images for sex ratio
 monitoring of deer, we conducted UAV surveys at night in a sparse forest
 located on the distribution periphery of sika deer (Cervus nippon) and
 wild boar (Sus scrofa) local populations during summer and winter. Of the
 163 thermal infrared images of large mammals detected, 132 (81.0%) and 16
 (9.8%) were identified for deer and wild boar, respectively. In addition,
 velvet antlers of deer were visually recognized during summer, and 92% of
 the detected deer were antlered. This biased sex ratio would be a
 characteristic in the distribution periphery of local deer populations.
 Therefore, monitoring abundance and sex ratio using thermal infrared
 sensors on UAVs can improve deer management especially in the distribution
 periphery of local populations.
description: Large mammals were detected using a thermal
 infrared camera (Zenmuse XT ZXTB19FP, DJI) on a UAV (Inspire 1 V2.0, DJI)
 in the study area of 1 km<sup>2</sup> in Tottori, western
 Japan. Observation flights were conducted at nights
 without rain, snowfall, or strong wind during summer and winter in 2017.
 A pilot controlled the UAV and camera
 manually and searched the heat sources on the controller’s monitor, flying
 approximately 70–120 m above ground to search. 
 Eleven camera traps (seven Trophycam XLT HD MAX, Bushnell,
 and four Ltl-5210A, Little Acorn Outdoors) were set in the study area over
 the entire period of drone observation (June to December 2017). We
 recorded videos for 30 s after detection using the infrared sensor, and
 the interval times after each video recording were 3 min for Trophycam and
 10 min for Ltl-5210A.
DOI: 10.5061/dryad.bcc2fqzdz
title: Metabolic syndrome for the prognosis of postoperative complications after open pancreatic surgery in Chinese adult: a propensity score matching study

description: Background: To investigate the relationship
 between metabolic syndrome (MS) and postoperative complications in Chinese
 adults after open pancreatic surgery. Methods: Relevant data were
 retrieved from the Medicalsystem® database of Changhai hospital (MDCH).
 All patients who underwent pancreatectomy from January 2017 to May 2019
 were included, and relevant data were collected and analyzed. A propensity
 score matching (PSM) and a multivariate generalized estimating equation
 were used to investigate the association between MS and composite
 compositions during hospitalization. Cox regression model was employed for
 survival analysis. Results: 1481 patients were finally eligible
 for this analysis. According to diagnostic criteria of Chinese MS, 235
 patients were defined as MS, and the other 1246 patients were controls.
 After PSM, no association was found between MS and postoperative composite
 complications (OR: 0.958, 95%CI: 0.715-1.282, P=0.958). But MS was
 associated with postoperative acute kidney injury (OR: 1.730,
 95%CI: 1.050-2.849, P=0.031). Postoperative AKI was associated
 with mortality in 30 days and 90 days after surgery
 (P&lt;0.001). Conclusions: MS is not an independent risk
 factor correlated with postoperative composite complications after open
 pancreatic surgery. But MS is an independent risk factor for postoperative
 AKI of pancreatic surgery in Chinese population, and AKI is associated
 with survival after surgery.
description: A clinical electronic medical record system was used to retrieve
 medical records of all patients undergoing elective pancreatectomy. The
 selected patients were identified with the key words "pancreas"
 and "anesthesia". This study met the ethical standards
 stipulated by the National Health Commission of the People's Republic
 of China (Act 11, 2016) and was approved by the ETHICS
 Committee.
description: IBM SPSS<sup>®</sup> Statistics v21 (IBM Corporation,
 NY, USA) RStudio (version 4.1.3).
DOI: 10.5061/dryad.fqz612jv0
title: Data for Rates of warming impact oxidative stress in zebrafish (Danio rerio)

description: Potentially negative effects of thermal variation on physiological
 functions may be modulated by compensatory responses, but their efficacy
 depends on the timescale of phenotypic adjustment relative to the rate of
 temperature change. Increasing temperatures in particular can affect
 mitochondrial bioenergetics and rates of reactive oxygen species (ROS)
 production. Our aim was to test whether different rates of temperature
 increase impact mitochondrial bioenergetics and modulate oxidative stress.
 We exposed zebrafish (Danio rerio) to warming from 20 to 28°C over 3, 6,
 24, or 48 h, and compared these to a control group that was kept at
 constant 20°C. Fish exposed to the fastest (3 h) and slowest (48 h) rates
 of warming had significantly higher rates of H2O2 production relative to
 the control treatment, and the proportion of O2 converted to H2O2 (H2O2/O2
 ratio) was significantly greater in these groups. However, ROS production
 was not paralleled by differences in mitochondrial substrate oxidation
 rates, leak respiration rates, or coupling (respiratory control ratios).
 Increased rates of ROS production did not lead to damage of proteins or
 membranes, which may be explained by a moderate increase in catalase
 activity at the fastest, but not the slowest rate of warming. The increase
 in ROS production at the slowest rate of heating indicates that even
 seemingly benign environments may be stressful. Understanding how animals
 respond to different rates of temperature change is important, because the
 rate determines the time period for phenotypic adjustments and it also
 alters the environmental thermal signal that triggers compensatory
 pathways.
description: See details in the published paper
DOI: 10.5061/dryad.3bk3j9kmp
title: Mountain- and brown hare genetic polymorphisms to survey local adaptations and conservation status of the heath hare (Lepus timidus sylvaticus, Nilsson 1831)

description: We provide the first whole genome sequences from three specimens of the
 mountain hare subspecies the heath hare (Lepus timidus sylvaticus), along
 with a sample subset of two mountain hares (Lepus timidus timidus) and two
 brown hares (Lepus europaeus) from Sweden. The heath hare has a unique
 grey winter pelage as compared to other mountain hares (white) and brown
 hares (mostly brown), and face regional extinction, likely due to
 competitive exclusion from the non-native brown hare. Whole genome
 resequencing from the eight hare specimens was mapped to the Lepus timidus
 pseudoreference genome and used for detection of 11,363,883 polymorphic
 nucleotide positions. We show that genomic data can be useful for
 addressing local adaptations and conservation status of mountain hares and
 brown hares in Sweden, including unique subspecies.
description: Muscle tissue samples were
 obtained from hares shot from 2005-2017 during the regular hunting season
 in Sweden. A single 350 bp fragment sized Illumina TruSeq PCR
 free library (Illumina, USA) was prepared for each hare sample at the
 SciLifeLab in Stockholm, Sweden (National Genomics Infrastructure
 Stockholm, Sweden). The samples were then pooled in equimolar ratios and
 sequenced over 4 lanes on the Illumina HiSeqX platform using the 2 X 151
 Hiseq X SBS chemistry. The Bcl to FastQ conversion was performed using
 bcl2fastq_v2.19.1.403 of the Illumina software package CASAVA. The trimmed reads were then mapped to the
 <em>psedudoreference</em> <em>Lepus</em>
 <em>timidus</em> genome (NCBI accession: GCA_009760805.1) with the Burrows Wheeler Aligner, BWA version
 0.7.17 using default the settings for the
 <em>bwa</em> <em>mem</em>
 algorithm. Raw variants
 were called across the genome in 100,000 bp regions using freebayes
 version 1.3.1. 
description: The genomic data described could be used to assess adaptations of
 hares in for example pigmentation, cold durability and pathogen resistance
 in local, regional or distribution-wide range. A particular value is to
 develop an integrated monitoring tool for assessing the conservation
 status of the heath hare in southern and central Sweden. This could be
 done by integrating genetic data, harvest data, pellet inventories and
 camera trapping. In addition to general conservation, the long-term
 preservation of the heath hare, as well as understanding of the nature of
 interactions between mountain hares and brown hares, is important from a
 resource perceptive since hares are a game species in Sweden and elsewhere
 and, as such, a source of meat and recreation.
DOI: 10.5061/dryad.80gb5mksj
title: Data from: Traits across trophic levels interact to influence parasitoid establishment in biological control releases

description: A central goal in ecology is to predict what governs a species’ ability to
 establish in a new environment. One mechanism driving establishment
 success is individual species’ traits, but the role of trait combinations
 among interacting species across different trophic levels are less clear.
 Deliberate or accidental species additions to existing communities provide
 opportunities to study larger scale patterns of establishment success.
 Biological control introductions are especially valuable because they
 contain data on both the successfully established and unestablished
 species. Here, we supplemented a recent dataset of importation biological
 control introductions with life-history traits for the parasitoid species
 and the herbivorus hosts they were released to control to explore how
 life-history traits of 132 parasitoid species and their herbivorous hosts
 interact to affect parasitoid establishment. We find that of five
 parasitoid and herbivore traits investigated, one parasitoid trait—host
 range—weakly predicts parasitoid establishment; parasitoids with higher
 levels of phylogenetic specialization have higher establishment success,
 though the effect is marginal. In addition, parasitoids are more likely to
 establish when their herbivore host has had a shorter residence time.
 Interestingly, we do not corroborate earlier findings that gregarious
 parasitoids and endo-parasitoids are more likely to establish. Most
 importantly, we find that life-history traits of the parasitoid species
 and their hosts can interact to influence establishment. Specifically,
 parasitoids with broader host ranges are more likely to establish when the
 herbivore they have been released to control is also more of a generalist.
 These results provide insight into how multiple species’ traits and their
 interactions, both within and across trophic levels, can influence
 establishment of species of higher trophic levels.