cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6216596
title: Acoustic Tracking Images and Figures

description: Acoustic telemetry is a common method used to assess the movement of fish and other aquatic animals.<br>There is a wide range of mooring configuration and set-ups, however sub-surface mooring combinations like the ones in this fileset are commonly employed.<br>This file set includes acoustic telemetry figures/images. File types: TIFF, JPG, cdr and AI.<br> Three mooring configuration variations are included: A) Standard mooring setup with VR2W receiver attached. B) mooring with “demersal” reference sentinel tag attached. C) mooring with synchronisation tag attached. And 1) All three mooring configurations in a single figure. <br><b>When using this these figures cite:</b>Fetterplace, L.C. (2017). “The ecology of temperate soft sediment fishes: Implications for fisheries management and marine protected area design". Doctor of Philosophy thesis, University of Wollongong.
DOI: 10.6084/m9.figshare.6216596.v1
title: Acoustic Tracking Images and Figures

description: Acoustic telemetry is a common method used to assess the movement of fish and other aquatic animals.<br>There is a wide range of mooring configuration and set-ups, however sub-surface mooring combinations like the ones in this fileset are commonly employed.<br>This file set includes acoustic telemetry figures/images. File types: TIFF, JPG, cdr and AI.<br> Three mooring configuration variations are included: A) Standard mooring setup with VR2W receiver attached. B) mooring with “demersal” reference sentinel tag attached. C) mooring with synchronisation tag attached. And 1) All three mooring configurations in a single figure. <br><b>When using this these figures cite:</b>Fetterplace, L.C. (2017). “The ecology of temperate soft sediment fishes: Implications for fisheries management and marine protected area design". Doctor of Philosophy thesis, University of Wollongong.
DOI: 10.6084/m9.figshare.6216458
title: PALAIOS supplementary material

description: <b>Fig. 6_high res .tif </b>- a high resolution image of the fossil bed, able to zoom in for more details. <br><b>Stylophorans .jpg </b>- Virtual reconstruction of the Karbonaatjies obrution bed shows over 145 articulated <i>Paranacystis</i> cf. <i>petrii </i>Caster, 1954 (green) and eight <i>Placocystella africana</i> (Reed, 1925) (red).<br><b>Ophiuroid arm fragments.jpg </b>- Virtual reconstruction of the Karbonaatjies obrution bed shows over 634 fragmented/ isolated arms that are complete or near complete. Arms are distributed randomly throughout the bed and occasionally in dense aggregations.<br><b>Additional figures.docx </b>- Associated fossiliferous beds, shell specimens in the lower part of the Karbonaatjies obrution bed, ophiuroid with broken arm next to disk. <br><b>Movie 1</b> - 3D movie <b>Movie 2 - </b>3D movie a sample<b>Movie 3 - </b>slice image stack of a sample. <b>Movie 4</b> - 3D movie of an Individual ophiuroid <br><br>
DOI: 10.6084/m9.figshare.6216458.v2
title: PALAIOS supplementary material

description: <b>Fig. 6_high res .tif </b>- a high resolution image of the fossil bed, able to zoom in for more details. <br><b>Stylophorans .jpg </b>- Virtual reconstruction of the Karbonaatjies obrution bed shows over 145 articulated <i>Paranacystis</i> cf. <i>petrii </i>Caster, 1954 (green) and eight <i>Placocystella africana</i> (Reed, 1925) (red).<br><b>Ophiuroid arm fragments.jpg </b>- Virtual reconstruction of the Karbonaatjies obrution bed shows over 634 fragmented/ isolated arms that are complete or near complete. Arms are distributed randomly throughout the bed and occasionally in dense aggregations.<br><b>Additional figures.docx </b>- Associated fossiliferous beds, shell specimens in the lower part of the Karbonaatjies obrution bed, ophiuroid with broken arm next to disk. <br><b>Movie 1</b> - 3D movie <b>Movie 2 - </b>3D movie a sample<b>Movie 3 - </b>slice image stack of a sample. <b>Movie 4</b> - 3D movie of an Individual ophiuroid <br><br>
DOI: 10.6084/m9.figshare.6216458.v1
title: PALAIOS supplementary material

description: <b>Fig. 6_high res .tif </b>- a high resolution image of the fossil bed, able to zoom in for more details. <br><b>Stylophorans .jpg </b>- Virtual reconstruction of the Karbonaatjies obrution bed shows over 145 articulated <i>Paranacystis</i> cf. <i>petrii </i>Caster, 1954 (green) and eight <i>Placocystella africana</i> (Reed, 1925) (red).<br><b>Ophiuroid arm fragments.jpg </b>- Virtual reconstruction of the Karbonaatjies obrution bed shows over 634 fragmented/ isolated arms that are complete or near complete. Arms are distributed randomly throughout the bed and occasionally in dense aggregations.<br><b>Additional figures.docx </b>- Associated fossiliferous beds, shell specimens in the lower part of the Karbonaatjies obrution bed, ophiuroid with broken arm next to disk. <br><b>Movie 1</b> - 3D movie <b>Movie 2 - </b>3D movie a sample<b>Movie 3 - </b>slice<b> i</b>mage stack of a sample. <b>Movie 4</b> - 3D movie of an Individual ophiuroid <br><br>
DOI: 10.6084/m9.figshare.6216386
title: Sustherb datasets

description: Sustherb is aproject aimed at identifying sustaible solutions in cervid management: https://www.ntnu.edu/web/museum/sustherb<br><br>Community dataset:<br>This is data from repeteted vegetation analysis (point interpect, 16 pins per 50 by 50 cm frame) in boreal forest in Norway. There are two regions and a total of 31 sites/locations. Each location has two plots/taetments (open plot (B) and exclosures (UB)). Each plot had 10 subplots of 50 by 50 cm. The sampling was done every other year, totally 4 times.<br>Tree dataset: This is data collected from the same plots as the community data, but different subplots. Here tree species and height class is recorded for all trees inside four 2 m radius circles inside each plot.
DOI: 10.6084/m9.figshare.6216386.v1
title: Sustherb datasets

description: Sustherb is aproject aimed at identifying sustaible solutions in cervid management: https://www.ntnu.edu/web/museum/sustherb<br><br>Community dataset:<br>This is data from repeteted vegetation analysis (point interpect, 16 pins per 50 by 50 cm frame) in boreal forest in Norway. There are two regions and a total of 31 sites/locations. Each location has two plots/taetments (open plot (B) and exclosures (UB)). Each plot had 10 subplots of 50 by 50 cm. The sampling was done every other year, totally 4 times.<br>Tree dataset: This is data collected from the same plots as the community data, but different subplots. Here tree species and height class is recorded for all trees inside four 2 m radius circles inside each plot.
DOI: 10.6084/m9.figshare.6216371
title: clinical-trial-data-sharing_DATA_v2.csv

description: Results from PubMed search on August 30, 2017.<br><br>Search:<br><br>("BMJ"[Journal] OR "British Medical Journal"[Journal] OR "JAMA"[Journal] OR<br>"Lancet"[Journal] OR "The New England journal of medicine"[Journal]) AND<br>data[Title/Abstract] AND (share*[Title/Abstract] OR sharing[Title/Abstract])<br>
DOI: 10.6084/m9.figshare.6216338
title: Supplementary Material for: Association of Novel ALX4 Gene Polymorphisms with Antidepressant Treatment Response: Findings from the CO-MED Trial

description: Genome-wide association studies (GWAS) were conducted in participants of the CO-MED (Combining Medications to Enhance Depression Outcomes) trial, a randomized, 3-treatment arm clinical trial of major depressive disorder (MDD) designed to identify markers of differential treatment outcome (response and remission). The QIDS-SR (Quick Inventory of Depressive Symptomatology, Self-Reported version) was used to measure response at week 6 (QIDS-SR ≤5) and remission at week 12 (QIDS-SR ≤6 and ≤8 at the last two study visits). Three treatment groups (escitalopram monotherapy, escitalopram + bupropion, and venlafaxine + mirtazapine) were evaluated. GWAS identified a potentially regulatory SNP rs10769025 in the ALX4 gene on chromosome 11 with a strong association (<i>p</i> value = 9.85925E–08) with response to escitalopram monotherapy in Caucasians. Further, haplotype analysis on 7 ALX4 variants showed that a regulatory haplotype CAAACTG was significantly associated (odds ratio = 3.4, <i>p</i> = 2.00E–04) with response to escitalopram monotherapy at week 6. Ingenuity pathway analyses in the present study suggest that ALX4 has an indirect connection with antidepressant gene pathways in MDD, which may account for the genetic association with treatment outcome. Functional genomics studies to investigate the role of ALX4 in antidepressant treatment outcome will be an interesting future direction.
DOI: 10.6084/m9.figshare.6216332
title: Supplementary Material for: Sequence Analysis of Drug Target Genes with Suicidal Behavior in Bipolar Disorder Patients

description: <b><i>Background:</i></b> A number of genes have been implicated in recent genome-wide association studies of suicide attempt in bipolar disorder. More focused investigation of genes coding for protein targets of existing drugs may lead to drug repurposing for the treatment and/or prevention of suicide. <b><i>Methods:</i></b> We analyzed 2,457 DNA variants across 197 genes of interest to GlaxoSmithKline across the pipeline in our sample of European patients suffering from bipolar disorder (<i>N</i> = 219). We analyzed these variants for a possible association with the suicide severity score (ranging from suicidal ideation/plan to serious suicide attempt) from the Schedule for Clinical Assessment in Neuropsychiatry. We conducted tests of individual variants and gene-based tests. <b><i>Results:</i></b> We found a number of DNA variants in the transforming growth factor beta receptor 1 gene (<i>TGFBR1</i>) to be suggestively associated with suicide severity scores (<i>p</i> &lt; 0.005). The gene-based tests also pointed to <i>TGFBR1</i> to be associated with suicide severity (<i>p</i> = 0.0001). However, these findings were not replicated in an independent bipolar disorder sample. <b><i>Conclusions:</i></b> We report no significant association between DNA sequences of drug target genes and suicidal behavior. Additional larger sequencing studies could further interrogate associations between variants in drug target genes and suicidal behavior.
DOI: 10.6084/m9.figshare.6216326
title: An Novel Image Steganography Method via Deep Convolutional Generative Adversarial Networks

description: In this paper, we propose a novel image SWE method based on the deep convolutional generative adversarial networks (DCGANs). We map the secret information into a noise vector, and then use the trained generator neural network model to generate the carrier image based on the noise vector. During the process of image generation, there is no modification or embedding operation.
DOI: 10.6084/m9.figshare.6216326.v1
title: An Novel Image Steganography Method via Deep Convolutional Generative Adversarial Networks

description: In this paper, we propose a novel image SWE method based on the deep convolutional generative adversarial networks (DCGANs). We map the secret information into a noise vector, and then use the trained generator neural network model to generate the carrier image based on the noise vector. During the process of image generation, there is no modification or embedding operation.
DOI: 10.6084/m9.figshare.6216317
title: Supplementary Material for: Impact of Caries Severity/Activity and Psychological Aspects of Caregivers on Oral Health-Related Quality of Life among 5-Year-Old Children

description: The aim of the present study was to evaluate the influence of the severity/activity of dental caries as well as sense of coherence (SOC) and locus of control (LOC) on oral health-related quality of life (OHRQoL) among 5-year-old children. A cross-sectional study was conducted involving 769 children at schools in a city in northeast Brazil. Parents/caregivers answered validated questionnaires addressing SOC and LOC. The children and parents/caregivers answered their respective modules of the Brazilian version of the Scale of Oral Health Outcomes for 5-year-old children (SOHO-5). Data were also collected on sociodemographic characteristics, visits to the dentist, and the occurrence of toothache. Clinical examinations were performed by 2 trained examiners. A directed acyclic graph was used to select covariates for statistical adjustment, and logistic regression for complex samples was used to test associations between the dependent and independent variables (α = 5%). For parents/caregivers, the variables associated with a negative impact on OHRQoL were the occurrence of toothache (odds ratio, OR: 10.53; 95% confidence interval, CI: 6.34–17.51; <i>p</i> &lt; 0.001) and a low SOC (OR: 2.17; 95% CI: 1.37–3.43; <i>p</i> = 0.001). According to the children’s perceptions, the following variables were associated with a negative impact on OHRQoL: toothache (OR: 3.58; 95% CI: 2.30–5.55; <i>p</i> &lt; 0.001), caries activity (OR: 1.97; 95% CI: 1.07–3.62; p = 0.028), and traumatic dental injury (OR: 1.71; 95% CI: 1.15–2.53; <i>p</i> = 0.007). Among parents/caregivers, a low SOC led to poorer OHRQoL. For the children, however, neither psychological aspect affected OHRQoL. In the perception of both the parents/caregivers and children, toothache was the oral condition that exerted a negative impact on OHRQoL.
DOI: 10.6084/m9.figshare.6216317.v1
title: Supplementary Material for: Impact of Caries Severity/Activity and Psychological Aspects of Caregivers on Oral Health-Related Quality of Life among 5-Year-Old Children

description: The aim of the present study was to evaluate the influence of the severity/activity of dental caries as well as sense of coherence (SOC) and locus of control (LOC) on oral health-related quality of life (OHRQoL) among 5-year-old children. A cross-sectional study was conducted involving 769 children at schools in a city in northeast Brazil. Parents/caregivers answered validated questionnaires addressing SOC and LOC. The children and parents/caregivers answered their respective modules of the Brazilian version of the Scale of Oral Health Outcomes for 5-year-old children (SOHO-5). Data were also collected on sociodemographic characteristics, visits to the dentist, and the occurrence of toothache. Clinical examinations were performed by 2 trained examiners. A directed acyclic graph was used to select covariates for statistical adjustment, and logistic regression for complex samples was used to test associations between the dependent and independent variables (α = 5%). For parents/caregivers, the variables associated with a negative impact on OHRQoL were the occurrence of toothache (odds ratio, OR: 10.53; 95% confidence interval, CI: 6.34–17.51; <i>p</i> &lt; 0.001) and a low SOC (OR: 2.17; 95% CI: 1.37–3.43; <i>p</i> = 0.001). According to the children’s perceptions, the following variables were associated with a negative impact on OHRQoL: toothache (OR: 3.58; 95% CI: 2.30–5.55; <i>p</i> &lt; 0.001), caries activity (OR: 1.97; 95% CI: 1.07–3.62; p = 0.028), and traumatic dental injury (OR: 1.71; 95% CI: 1.15–2.53; <i>p</i> = 0.007). Among parents/caregivers, a low SOC led to poorer OHRQoL. For the children, however, neither psychological aspect affected OHRQoL. In the perception of both the parents/caregivers and children, toothache was the oral condition that exerted a negative impact on OHRQoL.
DOI: 10.6084/m9.figshare.6216302
title: Supplementary Material for: Follow-Up for Resected Gastroenteropancreatic Neuroendocrine Tumours: A Practice Survey of the Commonwealth Neuroendocrine Tumour Collaboration (CommNETS) and the North American Neuroendocrine Tumor Society (NANETS)

description: <b><i>Objectives:</i></b> There is no consensus regarding optimal follow-up in resected gastroenteropancreatic neuroendocrine tumours (NETs). We aimed to perform a practice survey to ascertain follow-up patterns by health care practitioners and highlight areas of variation that may benefit from further quantitative research. <b><i>Methods:</i></b> A Web-based survey targeted at NET health care providers in Australia, New Zealand, Canada, and the USA was developed by a steering committee of medical oncologists and a research methodologist. Thirty-seven questions elicited information regarding adherence to guidelines, the influence of risk factors on follow-up, and the frequency and choice of modality in follow-up. <b><i>Results:</i></b> There were 163 respondents: 59 from Australia, 25 from New Zealand, 46 from Canada, and 33 from the USA (50% medical oncology, 23% surgery, 13% nuclear medicine, and 15% other). Thirty-eight percent of the respondents were “very familiar” with the NCCN NET guidelines, 33% with the ENETS guidelines, and 17% with the ESMO guidelines; however, only 15, 27, and 10%, respectively, found them “very useful”; 63% reported not using guidelines at their institution. The commonest investigations used were CT scans (66%) and chromogranin A (86%). The US respondents were more likely to follow patients up past 5 years, and the Australian respondents utilized more functional and less cross-sectional imaging. When poor prognostic factors were introduced, the respondents recommended more visits and tests. <b><i>Conclusions:</i></b> This large international survey highlights variation in current follow-up practices not well addressed by the current guidelines. More quantitative research is required to inform the development of evidence-based guidelines tailored to the pattern of recurrence in NETs.
DOI: 10.6084/m9.figshare.6216293
title: Maternally derived yolk antioxidants buffer the developing avian embryo against oxidative stress induced by hyperoxia

description: Data from experiment in which great tit (<i>Parus major</i>) eggs were incubation under normal (20% oxygen) or hyperoxic (40% oxygen) conditions. Data comprise measurements of antixoidants and lipid peroxidation in brain tissue and yolk, and relative telomere length in brain tissue. Refer to publication below for full methodologies and ethics approval.<br>Watson H, Salmón P & Isaksson C. 2018. Maternally derived yolk antioxidants buffer the developing avian embryo against oxidative stress induced by hyperoxia. Journal of Experimental Biology.<br>
DOI: 10.6084/m9.figshare.6216293.v1
title: Maternally derived yolk antioxidants buffer the developing avian embryo against oxidative stress induced by hyperoxia

description: Data from experiment in which great tit (<i>Parus major</i>) eggs were incubation under normal (20% oxygen) or hyperoxic (40% oxygen) conditions. Data comprise measurements of antixoidants and lipid peroxidation in brain tissue and yolk, and relative telomere length in brain tissue. Refer to publication below for full methodologies and ethics approval.<br>Watson H, Salmón P & Isaksson C. 2018. Maternally derived yolk antioxidants buffer the developing avian embryo against oxidative stress induced by hyperoxia. Journal of Experimental Biology.<br>
DOI: 10.6084/m9.figshare.6216290
title: Supplementary Material for: Functional Disconnectivity during Inter-Task Resting State in Dementia with Lewy Bodies

description: <b><i>Aims:</i></b> Limited research has been done on the functional connectivity in visuoperceptual regions in dementia with Lewy bodies (DLB) patients. This study aimed to investigate the functional connectivity differences between a task condition and an inter-task resting state condition within a visuoperceptual paradigm, in DLB patients compared with Alzheimer disease (AD) patients and healthy elderly control subjects. <b><i>Methods:</i></b> Twenty-six DLB, 29 AD, and 22 healthy subjects underwent a detailed clinical and neuropsychological examination along with a functional MRI during the different conditions of a visuoperceptual paradigm. Functional images were analyzed using group-level spatial independent component analysis and seed-based connectivity analyses. <b><i>Results:</i></b> While the DLB patients scored well and did not differ from the control and AD groups in terms of functional activity and connectivity during the task conditions, they showed decreased functional connectivity in visuoperceptual regions during the resting state condition, along with a temporal impairment of the default-mode network activity. Functional connectivity disturbances were also found within two attentional-executive networks and between these networks and visuoperceptual regions. <b><i>Conclusion:</i></b> We found a specific functional profile in the switching between task and resting state conditions in DLB patients. This result could help better characterize functional impairments in DLB and their contribution to several core symptoms of this pathology such as visual hallucinations and cognitive fluctuations.
DOI: 10.6084/m9.figshare.6216290.v1
title: Supplementary Material for: Functional Disconnectivity during Inter-Task Resting State in Dementia with Lewy Bodies

description: <b><i>Aims:</i></b> Limited research has been done on the functional connectivity in visuoperceptual regions in dementia with Lewy bodies (DLB) patients. This study aimed to investigate the functional connectivity differences between a task condition and an inter-task resting state condition within a visuoperceptual paradigm, in DLB patients compared with Alzheimer disease (AD) patients and healthy elderly control subjects. <b><i>Methods:</i></b> Twenty-six DLB, 29 AD, and 22 healthy subjects underwent a detailed clinical and neuropsychological examination along with a functional MRI during the different conditions of a visuoperceptual paradigm. Functional images were analyzed using group-level spatial independent component analysis and seed-based connectivity analyses. <b><i>Results:</i></b> While the DLB patients scored well and did not differ from the control and AD groups in terms of functional activity and connectivity during the task conditions, they showed decreased functional connectivity in visuoperceptual regions during the resting state condition, along with a temporal impairment of the default-mode network activity. Functional connectivity disturbances were also found within two attentional-executive networks and between these networks and visuoperceptual regions. <b><i>Conclusion:</i></b> We found a specific functional profile in the switching between task and resting state conditions in DLB patients. This result could help better characterize functional impairments in DLB and their contribution to several core symptoms of this pathology such as visual hallucinations and cognitive fluctuations.
DOI: 10.6084/m9.figshare.6216266
title: Simulated data and expetimental data for the FTIR spectra with different SNR

description: The simulated data is generated based on the QAsoft database,and the experimental data of Hydrogen Chloride with different concentrations measured by FTIR.
DOI: 10.6084/m9.figshare.6216266.v1
title: Simulated data and expetimental data for the FTIR spectra with different SNR

description: The simulated data is generated based on the QAsoft database,and the experimental data of Hydrogen Chloride with different concentrations measured by FTIR.
DOI: 10.6084/m9.figshare.6216227
title: Supplementary table 1 from Migration promotes plasmid stability under spatially heterogeneous positive selection

description: Raw data from immigration experiment. Data are shown as raw colony counts and converted to population density (cfus/ml). Counts of were taken from 2 plate types; skimmed milk agar + X-gal with no mercury (grey) which gives counts for the whole population and skimmed milk agar + X-gal + mercury (pink) which gives mercury resistant and therefore plasmid + counts only. From each plate 4 genotypes can be distinguished: GAC+ lacz- (GacAS positive, resident), gac- lacz- (GacAS negative, resident), GAC+ LACZ+ (GacAS positive, immigrant), gac- LACZ+ (GacAS negative, immigrant). Colony counts are then converted to population density (cfu/ml) based on the dilution factor counted (selecting the dilution with the most countable colonies).