cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.fj6q573wf
title: Treatment with 3-aminobenzamide during ex vivo lung perfusion of damaged rat lungs reduces graft injury and dysfunction after transplantation

description: Ex vivo lung perfusion (EVLP) with pharmacological reconditioning may
 increase donor lung utilization for transplantation (LTx).
 3-Aminobenzamide (3-AB), an inhibitor of poly (ADP-ribose) polymerase
 (PARP), reduces ex vivo lung injury in rat lungs damaged by warm ischemia
 (WI). Here we determined the effects of 3-AB reconditioning on graft
 outcome after LTx. Three groups of donor lungs were studied: Control
 (Ctrl): 1 hour WI + 3 hours cold
 ischemia (CI) + LTx; EVLP: 1 hour
 WI + 3 hours EVLP + LTx; EVLP + 3-AB: 1 hour
 WI + 3 hours EVLP + 3-AB
 (1 mg.mL−1) + LTx. Two hours after LTx, we
 determined lung graft compliance, edema, histology, neutrophil counts in
 bronchoalveolar lavage (BAL), mRNA levels of adhesion molecules within the
 graft, as well as concentrations of interleukin-6 and 10 (IL-6, IL-10) in
 BAL and plasma. 3-AB reconditioning during EVLP improved compliance and
 reduced lung edema, neutrophil infiltration, and the expression of
 adhesion molecules within the transplanted lungs. 3-AB also attenuated the
 IL-6/IL-10 ratio in BAL and plasma, supporting an improved balance between
 pro- and anti-inflammatory mediators. Thus, 3-AB reconditioning during
 EVLP of rat lung grafts damaged by WI markedly reduces inflammation,
 edema, and physiological deterioration after LTx, supporting the use of
 PARP inhibitors for the rehabilitation of damaged lungs during EVLP.
DOI: 10.5061/dryad.jq2bvq89x
title: Impacts of climate change on species distribution patterns of Polyspora Sweet in China

description: Supporting Information and four periods of environmental data for the
 manuscript (ECE-2021-12-01996). Species presence data for MaxEnt input.
DOI: 10.5061/dryad.qjq2bvqhk
title: Crop visitation by wild bees declines over an 8‐year time series: A dramatic trend, or just dramatic between‐year variation?

description: Despite widespread recognition of the need for long-term monitoring of
 pollinator abundances and pollination service provision, such studies are
 exceedingly rare. In this study, we assess changes in bee visitation and
 net capture rates at watermelon crop flowers at 19 farms in the
 mid-Atlantic region of the USA from 2005 to 201 Over the eight years, we
 found a 58% decline in wild bee visitation to crop flowers, but no
 significant change in honeybee visitation rate. Most types of wild bees
 showed similar declines in both the visitation and the net capture data;
 bumblebees however declined by 56% in the visitation data but showed no
 change in net capture rates. While we detected large and significant
 declines in wild bees when using GLMM models, permutation analyses that
 account for non-directional variation in abundance were non-significant,
 demonstrating the challenge of identifying and describing trends in highly
 variable populations. As far as we are aware, this paper represents one of
 fewer than 10 published time series (defined as &gt;5 years of data)
 studies of changes in bee abundance, and one of only two such studies
 conducted in an agricultural setting. More such studies are needed in
 order to understand the magnitude of bee decline and its ramifications for
 crop pollination.
description: Please do not hesitate to contact the corresponding author on
 this paper with questions about the data and usage: Andrew Aldercotte -
 andrew.aldercotte@rutgers.edu
DOI: 10.5281/zenodo.17467350
title: Dataset of forested catchments described in the manuscript "Controls on runoff processes in forested catchments worldwide"

description: Dataset of forested catchments described in the manuscript "Controls on runoff processes in forested catchments worldwide", Nature Water, 2026, 4, 102-114. https://www.nature.com/articles/s44221-025-00547-z
DOI: 10.5061/dryad.hdr7sqvk4
title: Data for Native mycorrhizal fungi improve milkweed growth, latex, and establishment while some commercial fungi may inhibit them

description: Arbuscular mycorrhizal (AM) fungi are root symbionts that can facilitate
 plant growth and influence plant communities by altering plant
 interactions with herbivores. Therefore, AM fungi could be critical for
 the conservation of certain rare plants and herbivores. For example, North
 American milkweed species are crucial hosts for monarch butterflies
 (Danaus plexippus). Understanding how mycorrhizal composition affects
 milkweeds will have direct impacts on the conservation and restoration of
 both increasingly threatened guilds. We present data from three studies on
 the effect of AM fungal composition on milkweed growth, latex production
 and establishment. First, we grew 7 milkweed species with and without a
 mixture of native mycorrhizal fungi. We assessed how important fungal
 composition is to milkweed growth and latex production by growing 4
 milkweed species with 7 fungal compositions, as single species
 inoculations with 4 native fungi, a mixture of native fungi, a single
 commercial fungus of presumably non-native origin and non-inoculated
 controls. Finally, we assessed field establishment of two milkweed species
 with and without native mycorrhizal inoculation. Milkweed species grew 98%
 larger and produced 82% more latex after inoculation with native
 mycorrhizae. Milkweeds were strongly affected by fungal composition;
 milkweeds were inhibited by commercial fungi (average -14% growth) and
 showed variable but positive responses to native fungal species (average
 of +3% to +38% biomass). Finally, we found that restoration establishment
 was dependent on inoculation with native fungi and milkweed species.
 Overall, our findings indicate that some milkweed species (i.e. A. syriaca
 and A. incarnata) are not responsive to mycorrhizal fungal presence or
 sensitive to mycorrhizal composition while others are, including
 endangered species (A. meadii) and species of high conservation value (A.
 tuberosa). We conclude that reintroduction of native AM fungi could
 improve the establishment of desirable milkweed species and should be
 considered within strategies for plantings for monarch conservation.
DOI: 10.5061/dryad.73n5tb2zb
title: Influence of pollen dispersal and mating pattern in domestication of intermediate Wheatgrass, a novel perennial food crop

description: Intermediate wheatgrass (IWG) is a perennial forage grass that is
 currently being domesticated as a grain crop. It is a primarily
 wind-pollinated outcrossing species and expresses severe inbreeding
 depression when self-pollinated. Characterization of pollen dispersal,
 mating parameters, and change in genetic diversity due to pollen movement
 is currently lacking in IWG. In this study, we examined pollen dispersal
 in an IWG selection nursery by evaluating 846 progeny from 15 mother
 plants and traced their parentage to 374 fathers. A set of 2500 genomic
 loci was used to characterize the population. We assigned paternity to 769
 (91%) progeny and the average number of fathers per mother plant was 37,
 from an average of 56 progeny examined per mother. An extensive number
 (80%) of pollination events occurred within 10 m of the mother plants.
 Pollination success was not correlated with trait attributes of the
 paternal genotypes. Mating system analysis confirmed that IWG is highly
 out-crossing and inbreeding was virtually absent. Neither genetic
 diversity nor the genome-estimated trait values of progeny were
 significantly affected by pollinator distance. The distance of pollinator
 in an IWG breeding nursery therefore was not found to be a major
 contributor in maintaining genetic diversity. These findings reveal the
 pollen dispersal model in IWG for the first time and its effect on genetic
 diversity, which will be valuable in designing future IWG breeding
 populations. Information generated and discussed in this study could be
 applied in understanding gene flow and genetic diversity of other
 open-pollinated species.
DOI: 10.7291/d1v96r
title: Data and code for: An anchovy ecosystem indicator of marine predator foraging and reproduction

description: Forage fishes are key energy conduits that transfer primary and secondary
 productivity to higher trophic levels. As novel environmental conditions
 caused by climate change alter ecosystems and predator-prey dynamics,
 there is a critical need to understand how forage fish control bottom-up
 forcing of food web dynamics. In the northeast Pacific, northern anchovy
 (Engraulis mordax) is an important forage species with high interannual
 variability in population size that subsequently impacts the foraging and
 reproductive ecology of marine predators. Anchovy habitat suitability from
 a species distribution model was assessed as an indicator of the diet,
 distribution, and reproduction of four predator species. Across 22 years
 (1998–2019), this anchovy ecosystem indicator (AEI) was significantly
 positively correlated with diet composition of all species and the
 distribution of Common murres (Uria aalge), Brandt’s cormorants
 (Phalacrocorax penicillatus), and California sea lions (Zalophus
 californianus), but not rhinoceros auklets (Cerorhinca monocerata). The
 capacity for the AEI to explain variability in predator reproduction
 varied by species but was strongest with cormorants and sea lions. The AEI
 demonstrates the utility of forage species distribution models in creating
 ecosystem indicators to guide ecosystem-based management.
description: This data set is derived from a species distribution model
 developed by Barb Muhling (B. A. Muhling, <em>et al.</em>,
 Predictability of Species Distributions Deteriorates Under Novel
 Environmental Conditions in the California Current System.
 <em>Front. Mar. Sci.</em> <strong>7</strong>, 1–22
 (2020)). We restricted the ranges of this SDM to the foraging range of
 three seabirds that breed in the Gulf of the Farallones off central
 California, and to the range of California sea lion foraging from a
 rookery at San Miguel Island in the Channel Islands. We took the average
 anchovy habitat suitability (probability of occurrence) during the
 reproductive season for each of these species to create our anchovy
 ecosystem indicator.
description: All analyses were performed in R.
DOI: 10.5281/zenodo.18397616
title: Experimental Dataset for Performance-Based Mix Design of Ultra-High-Performance Concrete
DOI: 10.5281/zenodo.18397617
title: Experimental Dataset for Performance-Based Mix Design of Ultra-High-Performance Concrete
DOI: 10.5061/dryad.xpnvx0kh4
title: Socio-ecological drivers of public conservation voting: restoring gray wolves to Colorado, USA

description: Understanding factors that influence real-world public conservation
 behaviors is critical for developing successful conservation policies and
 management actions. Citizens of Colorado, USA recently passed a ballot
 initiative to restore the gray wolf to its former range within the state.
 The &gt;3 million votes offer an unprecedented opportunity to test
 factors that influenced decisions to support or oppose this conservation
 action. We created spatial linear regression models to assess the
 relationship between support for wolf restoration and 1) the presidential
 vote, 2) distance to conservation intervention (i.e., proposed wolf
 reintroduction and existing wolves), and measures of 3) livelihood and 4)
 demographics using precinct-level data. Our results demonstrate the strong
 relationship between support for wolf restoration and political support
 for the Democratic candidate for president in the 2020 election, and
 highlights how other factors, including increased age, participation in
 elk hunting, and proximity to the reintroduction region were associated
 with less support. Our findings underscore the critical role of
 politicization on public conservation action and the need to develop
 outreach and engagement strategies to mitigate polarization.
DOI: 10.5061/dryad.5dv41ns79
title: Data supporting: Assessment of the performance of nonfouling polymer hydrogels utilizing citizen scientists

description: This dataset contains all data collected by citizen scientists in support
 of the publication: “Hansen N, Bryant A, McCormack R, Johnson H, Lindsay
 T, Stelck K, et al. (2021) Assessment of the performance of nonfouling
 polymer hydrogels utilizing citizen scientists. PLoS ONE 16(12): e0261817.
 https://doi.org/10.1371/journal.pone.0261817”. This study evaluates the
 performance of several commercially available nonfouling polymers using
 citizen science, to identify the best performing chemistry for future
 applications as bacteria resistant coatings. The specific polymer
 chemistries tested were zwitterionic sulfobetaine methacrylate (SBMA), and
 polyampholytes composed of [2-(acryloyloxy)ethyl] trimethylammonium
 chloride and 2-carboxyethyl acrylate (TMA:CAA) or TMA and 3-sulfopropyl
 methacrylate (TMA:SA). Each polymer chemistry is known to exhibit bacteria
 resistance, and this study utilizes a citizen science approach to compare
 the performance of these chemistries.
description: The methods used to collect this data are described in detail in
 the paper: “Hansen N, Bryant A, McCormack R, Johnson H, Lindsay T, Stelck
 K, et al. (2021) Assessment of the performance of nonfouling polymer
 hydrogels utilizing citizen scientists. PLoS ONE 16(12): e0261817.
 https://doi.org/10.1371/journal.pone.0261817”.
description: The polymer chemistries were distributed to the citizen
 scientists in sets containing three samples: two nonfouling hydrogels and
 one agar control. The provided data breaks up the results into each subset
 of polymers and the overall results as both an absolute number and as a
 percentage of the number of samples. The acronyms used in the data file
 are as follows: TMA:CAA - [2-(acryloyloxy)ethyl]
 trimethylammonium chloride and 2-carboxyethyl acrylate
 copolymer TMA:SA - [2-(acryloyloxy)ethyl]
 trimethylammonium chloride and 3-sulfopropyl methacrylate
 copolymer SBMA - sulfobetaine
 methacrylate 1&2 – TMA:CAA and
 TMA:SA 1&3 – TMA:CAA and
 SBMA 3&4 – SBMA and
 Agar
DOI: 10.57760/sciencedb.ecodb.00279
title: A dataset of carbon and water fluxes of the cropland ecosystem at Shunyi station from 2019 to 2020
title: 2019-2020年顺义农田生态系统碳水通量观测数据集

description: Based on the ChinaFLUX data processing standards, the raw observation data acquired by the eddy covariance system at the National Agro-environment Shunyi Observation and Experimental Station from 2019 to 2020 were processed to produce this standardized dataset of ecosystem carbon and water fluxes and key meteorological elements. In this dataset, the data for each year includes 8 Excel data files, divided into two categories: LITE, which includes major fluxes and meteorological variables, and ALL, which adds data quality and interpolation indicators on the basis of LITE. Each category has four data files, including data files at four scales: half-hour (HH), day (DD), month (MM), and year (YY). 
description: Based on the ChinaFLUX data processing standards, the raw observation data acquired by the eddy covariance system at the National Agro-environment Shunyi Observation and Experimental Station from 2019 to 2020 were processed to produce this standardized dataset of ecosystem carbon and water fluxes and key meteorological elements. In this dataset, the data for each year includes 8 Excel data files, divided into two categories: LITE, which includes major fluxes and meteorological variables, and ALL, which adds data quality and interpolation indicators on the basis of LITE. Each category has four data files, including data files at four scales: half-hour (HH), day (DD), month (MM), and year (YY).
DOI: 10.5061/dryad.6wwpzgn12
title: Flexible use of memory by food-caching birds

description: Animals use memory-guided and memory-independent strategies to make
 navigational decisions. Disentangling the contribution of these strategies
 to navigation is critical for understanding how memory influences
 behavioral output. To address this issue, we studied spatial behaviors of
 the chickadee, a food-caching bird. Chickadees hide food in concealed,
 scattered locations and retrieve their caches later in time. We designed
 an apparatus that allows birds to cache and retrieve food at many sites
 while navigating in a laboratory arena. This apparatus enabled automated
 tracking of behavioral variables – including caches, retrievals, and
 investigations of different sites. We built probabilistic models to fit
 these behavioral data using a combination of mnemonic and non-mnemonic
 factors. We found that chickadees use some navigational strategies that
 are independent of cache memories, including opportunistic foraging and
 spatial biases. They combine these strategies with spatially precise
 memories of which sites contain caches and which sites they have
 previously checked. A single memory of site contents is used in a
 context-dependent manner: during caching chickadees avoid sites ­that
 contain food, while during retrieval they instead preferentially access
 occupied sites. Our approach is a powerful way to investigate navigational
 decisions in a natural behavior, including flexible contributions of
 memory to these decisions.
DOI: 10.15468/dl.s4n73e
title: Occurrence Download

description: A dataset containing 23204 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nepenthes"
 ]
}

 The dataset includes 23204 records from 199 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003019-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.37pvmcvmn
title: Neural mechanism of experience-dependent sensory gain control in c. elegans

description: Animals' sensory systems adjust their responsiveness to environmental
 stimuli that vary greatly in their intensity. Here we report the neural
 mechanism of experience-dependent sensory adjustment, especially gain
 control, in the ASH nociceptive neurons in Caenorhabditis elegans. Using
 calcium imaging under gradual changes in stimulus intensity, we find that
 the ASH neurons of naive animals respond to concentration increases in a
 repulsive odor 2-nonanone regardless of the magnitude of the concentration
 increase. However, after preexposure to the odor, the ASH neurons exhibit
 significantly weak responses to a small gradual increase in odor
 concentration while their responses to a large gradual increase remain
 strong. Thus, preexposure changes the slope of stimulus-response
 relationships (i.e., gain control). Behavioral analysis suggests that this
 gain control contributes to the preexposure-dependent enhancement of odor
 avoidance behavior. Mathematical analysis reveals that the ASH response
 consists of fast and slow components, and that the fast component is
 specifically suppressed by preexposure for the gain control. In addition,
 genetic analysis suggests that G protein signaling is required for the
 fast component. Thus, our integrative study demonstrates how prior
 experience dynamically modulates stimulus-response relationships in
 sensory neurons, eventually leading to adaptive modulation of behavior.
description: Calcium imaging of ASH sensory neurons was
 performed as previously reported (Tanimoto et al., 2017; Tanimoto and
 Kimura, 2021). In brief, transgenic lines expressing GCaMP3 and mCherry in
 ASH were placed on NGM plates and observed under our original microscope
 system, OSB2. To measure the neural activity of multiple animals in a
 single observation, the transgenic animals were immobilized using
 levamisole, an agonist to the acetylcholine receptor (Lewis et al., 1980);
 ASH response is not affected by levamisole treatment (Tanimoto et al.,
 2017). For odor stimulation, we
 delivered a mixture of 2-nonanone and air at a total of 8 mm/min and
 created a temporal changing gradient of odor concentration by changing the
 ratio of 2-nonanone to air. We measured the gradients using a custom-made
 semiconductor sensor before and after performing the calcium imaging
 experiments on each day (Tanimoto and Kimura, 2021). We divided the fluorescent signals of GCaMP3 and
 mCherry through a dual-wavelength measurement optical system, w-view
 (Hamamatsu Photonics), and captured their fluorescence images using an
 EM-CCD camera (ImagEM, Hamamatsu Photonics). After subtracting the
 background, we extracted the fluorescence intensity of the cell body using
 ImageJ and used their ratio (GCaMP/mCherry) as the data.
DOI: 10.5061/dryad.gxd2547nx
title: Variable seed bed microsite conditions and light influence germination in Australian winter annuals

description: Environmentally cued germination may play an important role in promoting
 coexistence in Mediterranean annual plant systems if it causes niche
 differentiation across heterogeneous microsite conditions. In this study,
 we tested how microsite conditions experienced by seeds in the field and
 light conditions in the laboratory influenced germination in 12 common
 annual plant species occurring in the understorey of the York
 gum-jam woodlands in southwest Western Australia. Specifically, we
 hypothesized that if germination promotes spatial niche differentiation,
 then we should observe species-specific germination responses to light. In
 addition, we hypothesized that species’ laboratory germination response
 may depend on the microsite conditions experienced by seeds while buried.
 We tested the laboratory germination response of seeds under diurnally
 fluctuating light and complete darkness, which were collected from
 microsites spanning local-scale environmental gradients known to influence
 community structure in this system. We found that seeds of 6 out of the 12
 focal species exhibited significant positive germination responses to
 light, but that the magnitude of these responses varied greatly with the
 relative light requirement for germination ranging from 0.51 to 0.86 for
 these species. In addition, germination increased significantly across a
 gradient of canopy cover for two species, but we found little evidence to
 suggest that species’ relative light requirement for germination varied
 depending on seed bank microsite conditions. Our results suggest that
 variability in light availability may promote coexistence in this system
 and that the microsite conditions seeds experience in the intra-growing
 season period can further nuance species germination behaviour.
description: See methods in article (open source).
description: Missing values for germination were recorded for LARO because
 seeds were missing. ReadMe files are attached with data.