cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive136481.20191129.4.1
title: Klebsiella oxytoca

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136482.20191129.4.1
title: Campylobacter concisus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136483.20191129.4.1
title: Mycobacterium celatum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136484.20191129.4.1
title: Shigella boydii

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136485.20191129.4.1
title: Lactobacillus salivarius

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136486.20191129.4.1
title: Lactobacillus intestinalis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136487.20191129.4.1
title: Clostridium perfringens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136488.20191129.4.1
title: Salmonella enterica

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136489.20191129.4.1
title: Salmonella enterica

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136490.20191129.4.1
title: Lysinibacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136491.20191129.4.1
title: Klebsiella pneumoniae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136492.20191129.4.1
title: Salmonella enterica

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136493.20191129.4.1
title: Bacillus benzoevorans

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136494.20191129.4.1
title: Klebsiella pneumoniae subsp. rhinoscleromatis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136495.20191129.4.1
title: Pediococcus pentosaceus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136496.20191129.4.1
title: Pediococcus pentosaceus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136497.20191129.4.1
title: Erwinia aphidicola

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136498.20191129.4.1
title: Staphylococcus epidermidis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136499.20191129.4.1
title: Burkholderia thailandensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136500.20191129.4.1
title: Helcococcus ovis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136501.20191129.4.1
title: Bacillus subtilis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136502.20191129.4.1
title: Citrobacter farmeri

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136503.20191129.4.1
title: Streptococcus agalactiae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136504.20191129.4.1
title: Actinomyces radicidentis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.vys7v8
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "TaxonKey is Equus caballus Linnaeus, 1758",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000760-170627171947987/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ny6435
title: Occurrence Download

description: A dataset containing 232 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bidens amplissima Greene"
 ]
}

 The dataset includes 232 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013549-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z5zerq
title: Occurrence Download

description: A dataset containing 196 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((4.975 52.925,5.025 52.925,5.025 52.975,4.975 52.975,4.975 52.925))",
 "DatasetKey is Observation.org, Nature data from around the World",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 196 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0305591-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v8md9c
title: Occurrence Download

description: A dataset listing the 122 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-81.961 46.09,-81.768 46.09,-81.768 46.131,-81.961 46.131,-81.961 46.09))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 122 records were derived from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087725-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xquwah
title: Occurrence Download

description: A dataset containing 15043 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Esox niger Lesueur, 1818"
 ]
}

 The dataset includes 15043 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0410686-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10021617
title: FABind: Fast and Accurate Protein-Ligand Binding

description: The preprocessed PDBbind2020 dataset for paper "FABind: Fast and Accurate Protein-Ligand Binding" with associated code at https://github.com/QizhiPei/FABind.
The dataset files are saved as .pt and lmdb file for the convenience of use.
We follow the same preprocessing as TankBind.Paper Abstract:
Modeling the interaction between proteins and ligands and accurately predicting their binding structures is a critical yet challenging task in drug discovery. Recent advancements in deep learning have shown promise in addressing this challenge, with sampling-based and regression-based methods emerging as two prominent approaches. However, these methods have notable limitations. Sampling-based methods often suffer from low efficiency due to the need for generating multiple candidate structures for selection. On the other hand, regression-based methods offer fast predictions but may experience decreased accuracy. Additionally, the variation in protein sizes often requires external modules for selecting suitable binding pockets, further impacting efficiency. In this work, we propose FABind, an end-to-end model that combines pocket prediction and docking to achieve accurate and fast protein-ligand binding. FABind incorporates a unique ligand-informed pocket prediction module, which is also leveraged for docking pose estimation. The model further enhances the docking process by incrementally integrating the predicted pocket to optimize protein-ligand binding, reducing discrepancies between training and inference. Through extensive experiments on benchmark datasets, our proposed FABind demonstrates strong advantages in terms of effectiveness and efficiency compared to existing methods. Our code is available at https://github.com/QizhiPei/FABind.
DOI: 10.5281/zenodo.11352521
title: FABind: Fast and Accurate Protein-Ligand Binding

description: The preprocessed PDBbind2020 dataset for paper "FABind: Fast and Accurate Protein-Ligand Binding" with associated code at https://github.com/QizhiPei/FABind.
The dataset files are saved as .pt and lmdb file for the convenience of use.
We follow the same preprocessing as TankBind.Paper Abstract:
Modeling the interaction between proteins and ligands and accurately predicting their binding structures is a critical yet challenging task in drug discovery. Recent advancements in deep learning have shown promise in addressing this challenge, with sampling-based and regression-based methods emerging as two prominent approaches. However, these methods have notable limitations. Sampling-based methods often suffer from low efficiency due to the need for generating multiple candidate structures for selection. On the other hand, regression-based methods offer fast predictions but may experience decreased accuracy. Additionally, the variation in protein sizes often requires external modules for selecting suitable binding pockets, further impacting efficiency. In this work, we propose FABind, an end-to-end model that combines pocket prediction and docking to achieve accurate and fast protein-ligand binding. FABind incorporates a unique ligand-informed pocket prediction module, which is also leveraged for docking pose estimation. The model further enhances the docking process by incrementally integrating the predicted pocket to optimize protein-ligand binding, reducing discrepancies between training and inference. Through extensive experiments on benchmark datasets, our proposed FABind demonstrates strong advantages in terms of effectiveness and efficiency compared to existing methods. Our code is available at https://github.com/QizhiPei/FABind.
DOI: 10.15468/dl.tqzbp3
title: Occurrence Download

description: A dataset containing 528 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2024",
 "Geometry POLYGON ((-130.7383528944533 -59.46314024951374, -130.7383528944533 32.71876227804215, -26.26729810228821 32.71876227804215, -26.26729810228821 -59.46314024951374, -130.7383528944533 -59.46314024951374))",
 "OccurrenceStatus is Present",
 "TaxonKey is Neopelma aurifrons (Wied-Neuwied, 1831)"
 ]
}

 The dataset includes 528 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052098-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9695ju
title: Occurrence Download

description: A dataset containing 579 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-118.03711 15.45368,-84.28711 15.45368,-84.28711 32.69487,-118.03711 32.69487,-118.03711 15.45368))",
 "HasGeospatialIssue is false",
 "TaxonKey is Chenopodium album L."
 ]
}

 The dataset includes 579 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0246130-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p6cnzy
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((4.975 53.125,5.025 53.125,5.025 53.175,4.975 53.175,4.975 53.125))",
 "DatasetKey is Observation.org, Nature data from around the World",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0305584-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2675d3
title: Occurrence Download

description: A dataset containing 11939 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material citation, Specimen, Fossil, Material sample)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is Institution match fuzzy",
 "OccurrenceStatus is Present",
 "TaxonKey is Rumex acetosella L."
 ]
}

 The dataset includes 11939 records from 313 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023364-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v8aujv
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Greece",
 "Geometry POLYGON((22.35059 41.17866,22.56152 39.78828,23.33496 38.03771,24.24902 37.25832,25.93652 36.58377,27.34277 37.53761,27.55371 39.5176,26.78027 41.86302,22.35059 41.17866))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Phocoena phocoena (Linnaeus, 1758)"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052878-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wh9eur
title: Occurrence Download

description: A dataset containing 12981 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "TaxonKey is Graptemys Agassiz, 1857",
 "TaxonKey is Terrapene Merrem, 1820",
 "TaxonKey is Emys Duméril, 1806",
 "TaxonKey is Siebenrockiella Lindholm, 1929",
 "TaxonKey is Morenia Gray, 1870"
 ]
 }
 ]
}

 The dataset includes 12981 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0248138-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u9ee65
title: Occurrence Download

description: A dataset containing 207032 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Spizella breweri Cassin, 1856"
 ]
}

 The dataset includes 207032 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0318176-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gfkmc5
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dendroctonus frontalis Zimmermann, 1868"
 ]
}

 The dataset includes 144 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000761-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.frjpse
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Lycalopex culpaeus (Molina, 1782)"
 ]
}

 The dataset includes 71 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061383-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.88buta
title: Occurrence Download

description: A dataset containing 6444540 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 6444540 records from 1574 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0312951-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uvu6mz
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psiadia pollicina A.J.Scott"
 ]
}

 The dataset includes 16 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084217-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7v526y
title: Occurrence Download

description: A dataset containing 789 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leonurus sibiricus L.",
 "Country is China",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true"
 ]
}

 The dataset includes 789 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084218-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qsev2n
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aichryson pachycaulon Bolle",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084219-240321170329656/datasets/export for details.
DOI: 10.15468/dl.zffabu
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psychotria pocsii Borhidi & Verdc."
 ]
}

 The dataset includes 39 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084221-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wra7h7
title: Occurrence Download

description: A dataset containing 6409 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "GadmGid is USA.10.10_1",
 "Year 2020-2022"
 ]
}

 The dataset includes 6409 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084220-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.468a87
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pterospermum borneense S.K.Ganesan"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084223-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s7g6pk
title: Occurrence Download

description: A dataset containing 872 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psiadia punctulata (DC.) Oliv. & Hiern ex Vatke"
 ]
}

 The dataset includes 872 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084224-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kzu386
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aichryson tortuosum (Aiton) Webb & Berthel.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084226-240321170329656/datasets/export for details.
DOI: 10.15468/dl.9e85uk
title: Occurrence Download

description: A dataset containing 183 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pagamea duckei Standl."
 ]
}

 The dataset includes 183 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084225-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ybacxr
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psychotria podantha (Fosberg) A.C.Sm."
 ]
}

 The dataset includes 11 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084227-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jugp4r
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salvia officinalis L.",
 "Country is China",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084228-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.