cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/z4z639sknw
title: Integrated phylogenomic and fossil evidence of stick and leaf insects (Phasmatodea) reveal a Permian-Triassic co-origination with insectivores

description: Stick and leaf insects (Phasmatodea) are a distinctive insect order whose members are characterised by mimicking various plant tissues such as twigs, foliage, and bark. Unfortunately, the phylogenetic relationships among phasmatodean subfamilies and the timescale of their evolution remain uncertain. Recent molecular clock analyses have suggested a Cretaceous-Palaeogene origin of crown Phasmatodea and a subsequent Cenozoic radiation, contrasting with fossil evidence. Here we analysed transcriptomic data from a broad diversity of phasmatodeans and, combined with the assembly of a new suite of fossil calibrations, we elucidate the evolutionary history of stick and leaf insects. Our results differ from recent studies in the position of the leaf insects (Phylliinae), which are recovered as sister to a clade comprising Clitumninae, Lancerocercata, Lonchodinae, Necrosciinae, and Xenophasmina. We recover a Permian to Triassic origin of crown Phasmatodea coinciding with the radiation of early insectivorous parareptiles, amphibians, and synapsids. Aschiphasmatinae and Neophasmatodea diverged in the Jurassic–Early Cretaceous. A second spur in origination occurred in the Late Cretaceous, coinciding with the Cretaceous Terrestrial Revolution, and was likely driven by visual predators such as stem birds (Enantiornithes) and the radiation of angiosperms.
DOI: 10.17632/hpfxwsgrwx
title: Administration of a low-cost quantitative continuous measurement of movements of the extremities of people with Parkinson’s disease

description: A low-cost quantitative continuous measurement of movements in the extremities of people with Parkinson’s disease was developed to enhance the gold-standard structured assessment of people with Parkinson’s disease (PD) assessed by the visual observation by the examiner of the person with PD (Goetz, et al., 2008) with the recorded output of signals to document the three dimensions of the positions in space of the finger and wrist or the toe and ankle of the participant performing tasks that may be impaired in people with PD (McKay, et al., 2019). The accelerometers were taped to the dorsal surface of the second (middle) phalanx of the index finger and the dorsum of the arm midway between the radius and the ulna two inches from the wrist joint to measure the movements in the upper extremity and to the dorsal surface of the proximal phalanx of the first (big) toe and the anterior surface of the tibia two inches proximal to the medial malleolus to measure the movements of the lower extremity (McKay, et al.,2019). The examiner instructed the participant how to perform each task. The examiner demonstrated the movements. The examiner did not continue to perform the movements while the participant was performing them. After the participant began the task, the examiner instructed the participant to perform each movement as quickly and fully as possible. The examiner encouraged the participant to execute each motion with the maximal speed and range of motion. The examiner sought to capture at least ten optimal repetitions for each motion. In order to attain a minimum of ten top-notch repetitions the examiner asked the participant to perform many more repetitions. The ten optimal repetitions could later be extracted for further analysis. The data shows a trained examiner administering the procedures to a healthy 68-year-old male participant with typical development. A videographer recorded the performance of the procedure by the participant.

The data from this procedure performed on cohorts of individuals with Parkinson’s disease and multiple system atrophy and healthy age- and sex-matched individuals with typical development have been published (Harrigan, et al., 2020).
DOI: 10.17632/ssv9m953mb
title: Facial attractiveness of primates as scored by human respondents

description: Data used for the paper entitled "Judging others by your own standards: attractiveness of primate faces as seen by human respondents". It contains human ratings of primate facial attractiveness and various explanatory variables.
DOI: 10.6084/m9.figshare.22741374.v1
title: Bootstrap inference for panel data quantile regression*

description: This paper develops bootstrap methods for practical statistical inference in panel data quantile regression models with fixed effects. We consider random-weighted bootstrap resampling and formally establish its validity for asymptotic inference. The bootstrap algorithm is simple to implement in practice by using a weighted quantile regression estimation for fixed effects panel data. We provide results under conditions that allow for temporal dependence of observations within individuals, thus encompassing a large class of possible empirical applications. Monte Carlo simulations provide numerical evidence the proposed bootstrap methods have correct finite sample properties. Finally, we provide an empirical illustration using the environmental Kuznets curve.
DOI: 10.6084/m9.figshare.9693590.v1
title: ACPFLII-STRUCTURE-2

description: ACPFLII-STRUCTURE-2Optimized geometries of intermediates A-D and transition states TS1-3 starting from structure 2 taken from MD trajectory of acetylated (AcPFL II) topology without CoA in the active site.
DOI: 10.6084/m9.figshare.9879737.v2
title: Data for "The effects of exercise variation in muscle thickness, maximal strength and motivation in resistance trained men"

description: Data for "The effects of exercise variation in muscle thickness, maximal strength and motivation in resistance trained men"
DOI: 10.6084/m9.figshare.26640106.v1
title: Volcanic eruption databases

description: Volcanic eruption databases: J18 (Johansson et al., 2018, n:167 eruptions)EY17 (Ernst & Youbi 2017, n: 73 LIPs)D16 (Doubrovine et al., 2016, n: 26 LIPs)
DOI: 10.6084/m9.figshare.5719195.v1
title: Natural decomposition of hornbeam wood decayed by the white rot fungus Trametes versicolor

description: ABSTRACT The impacts of white-rot fungi on altering wood chemistry have been studied mostly in vitro. However, in vivo approaches may enable better assessment of the nature of interactions between saprotrophic fungi and host tree in nature. Hence, decayed and sound wood samples were collected from a naturally infected tree (Carpinus betulus L.). Fruiting bodies of the white rot fungus Trametes versicolor grown on the same tree were identified using rDNA ITS sequencing. Chemical compositions (cellulose and lignin) of both sound and infected wood were studied. FT-IR spectroscopy was used to collect spectra of decayed and un-decayed wood samples. The results of chemical compositions indicated that T. versicolor reduced cellulose and lignin in similar quantities. Fungal activities in decayed wood causes serious decline in pH content. The amount of alcohol-benzene soluble extractives was severely decreased, while a remarkable increase was found in 1% sodium hydroxide soluble and hot water extractive contents in the decayed wood samples, respectively. FT-IR analyses demonstrated that T. versicolor causes simultaneous white rot in the hornbeam tree in vivo which is in line with in vitro experiments.
DOI: 10.17632/692kmz63zk
title: Dataset for the Study: Personality Predispositions to Higher-Order Motivations of Morality and Frugality for Pro-Environmental Behavior.

description: This dataset was used in the study: "Personality Predispositions to Higher-Order Motivations of Morality and Frugality for Pro-Environmental Behavior". The study investigated which personality traits make someone predisposed to morality motivation, and which - to frugality motivation for pro-environmental behavior (PEB), as these are two of the strongest motivations for PEB. We hypothesized that openness to experience and agreeableness are positively associated with morality motivation for PEB, while conscientiousness is positively associated with frugality motivation for PEB. Assuming these hypotheses hold, we further hypothesized that individuals high in openness and agreeableness but low in conscientiousness are more likely to be motivated by morality than frugality for PEB. Inversely, individuals low in openness and agreeableness but high in conscientiousness are more likely to be motivated by frugality than morality for PEB. Data was collected and analyzed from a sample of 204 Russians. This dataset contains data on the big-5 personality traits (extraversion-3 items, agreeableness-5 items, conscientiousness-4 items, openness-6 items, neuroticism-5 items); morality motivation for PEB (4 items); frugality motivation for PEB (4 items); and socio-demographics (age, gender, level of education, income). The results from a series of multiple regression analyses predicting morality and frugality motivation for PEB (predictors: age, income, & the big-5 traits), indicated that openness and agreeableness had a positive association with morality motivation, while conscientiousness had a positive association with frugality motivation for PEB. The result from moderation analysis indicated that agreeableness interacted with openness to predict morality motivation for PEB: the positive association between agreeableness and morality motivation was stronger when the individuals were higher in openness. Furthermore, the participants were sorted and grouped according to their percentile range on the variables: openness, agreeableness, and conscientiousness. Two groups of different personality profiles were created: (1) high openness (≥ 60th percentile) and high agreeableness (≥ 60th percentile) but low conscientiousness (i.e., ≤ 50th percentile) (N=35). And, (2) low openness (≤ 40th percentile) and low agreeableness (≤ 40th percentile) but high conscientiousness (≥ 50th percentile) (N = 29). The data files for both groups are available in this dataset. Each of the 2 groups was assessed on which of morality and frugality motivation for PEB they are more predisposed to. Results from a pair of Wilcoxon signed-rank tests revealed that individuals high in openness and agreeableness but low in conscientiousness scored higher on morality as compared to frugality motivation for PEB. On the other hand, individuals low in openness and agreeableness but high in conscientiousness scored higher on frugality as compared to morality motivation for PEB.
DOI: 10.17632/b74xk7fzgy
title: Effect of dupilumab on allergic contact dermatitis and patch testing

description: Supplemental material for the paper: Effects of dupilumab on allergic contact dermatitis and patch testing (J Am Acad Dermatol. 2021)
DOI: 10.6084/m9.figshare.7615886.v2
title: OmDB.tax.txt

description: taxonomic map for a fasta database used for metabarcoding of omycete species (ITS1).
DOI: 10.17605/osf.io/35kyh
title: Unlocking the Potential of HB/RDW Ratio as A Simple Marker for Predicting Mortality in Acute Ischemic Stroke Patients After Thrombolysis

description: This is the lab protocol and data set for the research entitled 'Unlocking the Potential of HB/RDW Ratio as a Simple Marker for Predicting Mortality in Acute Ischemic Stroke Patients After Thrombolysis.' Our study aims to compare the predictive performance of various inflammatory biomarkers for predicting IHM in AIS patients treated with rt-PA.
DOI: 10.17632/b7s5vgjp9w
title: DDI2 protease controls embryonic development and inflammation via TCF11/NRF1

description: Raw data related to manuscript "DDI2 protease controls embryonic development and inflammation via TCF11/NRF1".
DOI: 10.6084/m9.figshare.28099748.v1
title: Toxoplasma and cytokines

description: Dataset for study which assessed whether pregnant women in the first trimester infected with <i>Toxoplasma gondii</i> have different cytokine levels than uninfected women. This study also examined whether women with discordant test results for toxoplasmosis represent a distinct group or a mixed group composed of infected women with unusually low levels of anti-<i>Toxoplasma</i> antibodies and uninfected women with high levels of cross-reacting antibodies. The dataset contains variables age, method of conception, parity, child sex, pregnancy length, toxoplasma status, and cytokine levels.
DOI: 10.6084/m9.figshare.28152962.v1
title: <b>Supplementary Table S2</b> List of <i>Coffea arabica</i> cultivars used in Experiment 2 with the respective provider institution and parents.

description: <b>Supplementary Table S2</b> List of <i>Coffea arabica</i> cultivars used in Experiment 2 with the respective provider institution and parents.
DOI: 10.6084/m9.figshare.9161894.v2
title: High quality early childhood intervention for poor children has lasting impact on brain structure: Volume, cortical thickness and surface area data

description: This accompanies the article "High quality childhood intervention for poor children has lasting impact on brain structure" by Martha J. Farah, Thomas A. Nichols, Jeffrey T. Duda, Terry Lorenz, Yi Luo, Sharon L. Ramey, Read Montague, and Craig T. Ramey.<br>Tables represent volume, cortical thickness and surface area of discrete regions in the brain. Non-identifiable demographic information presented in each table.
DOI: 10.6084/m9.figshare.1566828.v4
title: An empirical variance distribution approximation, using backtransformation from the percentile scale, for the quantile estimating function of continuous distributions

description: This paper demonstrates a quadratic polynomial proxy, to calculate quantile variance estimates of continuous distributions in the percentile scale, for the quantile estimating function (Koencker & Bassett). The empirical variance distribution function created by the backtransformation of the percentile scale calculations to the original measurement scale for the proxy estimator, has a step function morphology, in common with the empirical cumulative distribution function. The use of the empirical variance distribution approach to calculating the variance of the quantile regression residuals becomes a new method for calculating confidence intervals for fitted quantile regression coefficients.
DOI: 10.6084/m9.figshare.21382353.v1
title: BIOL 3250 Data and Meta-Data, Danial R.pdf

description: BIOL 3250 Data and Meta-Data, Danial R.pdf Birdwatching
DOI: 10.6084/m9.figshare.23938503.v1
title: A DNA nanodevice for mapping sodium at single organelle resolution - raw data

description: Cellular sodium ion (Na<sup>+</sup>) homeostasis is integral to organism physiology. Our current understanding of Na<sup>+</sup> homeostasis is largely limited to Na<sup>+</sup> transport at the plasma membrane. Organelles may also contribute to Na<sup>+</sup> homeostasis, however, the direction of Na<sup>+</sup> flow across organelle membranes is unknown because Na<sup>+</sup> cannot be imaged. Here, we report a pH-independent, organelle-targetable, ratiometric probe that reports lumenal Na<sup>+</sup>. It is a DNA nanodevice containing a Na<sup>+</sup>-sensitive fluorophore, a reference dye and an organelle targeting domain. By measuring Na<sup>+</sup> at single endosome resolution in mammalian cells and in <i>C. elegans</i>, we discover that lumenal<i> </i>Na<sup>+</sup> levels in each stage of the endolysosomal pathway exceed cytosolic levels and decrease as endosomes mature. Further, we find that lysosomal Na<sup>+</sup> levels in nematodes are modulated by the Na<sup>+</sup>/H<sup>+</sup> exchanger NHX-5 in response to salt stress. The ability to image sub-cellular Na<sup>+</sup> will unveil mechanisms of Na<sup>+</sup> homeostasis at an increased level of cellular detail.
DOI: 10.6084/m9.figshare.20438889.v1
title: Spindle assembly timelapse with augmin

description: Timelapse images of meiotic spindle self-organization in Xenopus egg extracts supplemented with purified augmin holocomplex (red: tubulin; green: DNA)
DOI: 10.17632/y28j8mgf8k
title: Cubic Knapsack Problem Instances

description: The data folder contains detailed description of the data set presented here. The data set is the data set used in our paper: "A 3-space dynamic programming heuristic for the cubic knapsack problem." The paper is under review, the full reference to the paper will be updated after being published
DOI: 10.6084/m9.figshare.24356395.v1
title: Supplementary Material for: Telomere length among Chinese aged 75+ years

description: Introduction: Telomere length (TL) is generally regarded as a biomarker of aging. TL, which is influenced by sociodemographic factors, has been shown to be inversely associated with morbidity. However, most studies examined the youngest old and whether the findings can be extended to older individuals is less clear. Further, few studies have examined these questions in Chinese older adults. This cross-sectional study examined TL and its associated factors in Chinese aged 75+ years in Hong Kong. Methods: Participants were from the Mr. and Ms. Osteoporosis cohort. A structured interview on sociodemographic factors and physical measurement was conducted. Frailty and sarcopenia status were respectively determined by Fried’s criteria and Asian Working Group for Sarcopenia definition. TL was measured by a molecular inversion probe - quantitative PCR (MIP-qPCR) assay and expressed as a novel telomere / a single copy reference gene (T/S) ratio. Adjusted binary logistic regressions were used to examine the associations between TL and the presence of multimorbidity, age-related diseases, frailty and sarcopenia. Results: Among 555 participants (mean age 83.6±3.8 years, 41.3% women), the mean T/S ratio was 1.01±0.20. Males had a lower T/S ratio (0.97±0.20) compared with females (1.07±0.18) (p&lt;0.001). A lower education level was related to a longer TL (p=0.016). Being a current smoker was related to a shorter TL (p=0.007). TL was not significantly different across categories of age, subjective socioeconomic status, drinking status, physical activity level and body mass index (p&gt;0.05). There were no associations between TL and the presence of multimorbidity, diabetes, stroke, cardiovascular diseases, cognitive impairment, frailty and sarcopenia. Conclusion: Among Chinese aged 75+ years, males had shorter TL compared with females. TL was not associated with age-related diseases, frailty and sarcopenia in this age group. TL may not be a biological marker of aging among older individuals.
DOI: 10.17632/cx67bdkfrg
title: Accompanying files for STAR Protocol: "Genome-scale chemogenomic CRISPR screens in human cells using the TKOv3 library"

description: Additional files to help implement CRISPR screens with the TKOv3. This include scripts for trimming sequences and for implementing dark cycles on the NextSeq500 platform.
DOI: 10.15468/dl.ekhg2r
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Alentia gelatinosa (M.Sars, 1835)"
 ]
}

 The dataset includes 122 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009339-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/wbgvh6prf8
title: Experimental Data on hIgG Capture Using High-Gradient Magnetic Separation

description: This dataset contains the experimental used in our study on modeling high-gradient magnetic separation (HGMS) for human immunoglobulin G (hIgG) purification. The data supports the development and validation of mechanistic models that predict magnetic particle (MP) behavior, pH dynamics, and hIgG elution. Key datasets include:
1. Dynamic Light Scattering (DLS) Data: Measurement of MP size distribution and hydrodynamic diameters under varying conditions.
2. hIgG Quantification Data: Data from high-performance liquid chromatography (HPLC) and UV-absorbance methods for determining hIgG concentration throughout the HGMS process.
3. Isotherm Measurements: Small-scale adsorption and desorption isotherms to determine Langmuir binding parameters.
4. Online Monitoring Data: Data from in-line sensors capturing pH, UV-absorbance, conductivity, and MP concentration dynamics during the RS-HGMS process.
5. Particle Size Measurements and TEM Images: Characterization of synthesized magnetic particles, including morphology, magnetization properties, and surface characterization.
6. Process Run Logs: Data logs of RS-HGMS process runs, capturing real-time data and validating model predictions against experimental outcomes.
DOI: 10.6084/m9.figshare.7983062.v2
title: Attitudes and Practices of Community Pharmacists and Barriers to their Participation in Public Health Activities in Yemen

description: <b>Attitudes and Practices of Community Pharmacists and Barriers to their Participation in Public Health Activities in Yemen</b>
DOI: 10.17632/8g979hncz3
title: Bibliometric Analysis of Research Trends and Collaborative Networks for Geosynthetic Reinforced Soil Technology

description: In this study, a bibliometric analysis of research advances in geosynthetic reinforced soil technology was carried out using CiteSpace and HistCite software, and data were collected from 1746 documents in the Web of Science core database for the period from 2001 to 2024. The results of this study provide comprehensive insights into various aspects of the topic, including (1) specific attributes of publications; (2) basic details of countries, institutions, and journals covered; and (3) an overview of popular development patterns and priorities. Ultimately, this study evaluates and outlooks the research results of geosynthetic reinforced soil technology and provides guidance for researchers seeking to rapidly integrate into the field.
DOI: 10.17632/vf2js4f698
title: Data for: A New Appraisal of Depositional Cyclicity in the Neoarchean-Paleoproterozoic Dales Gorge Member (Brockman Iron Formation, Hamersley Basin, Australia)
DOI: 10.17632/n6t49bxhh4
title: Sequential Contests experiment replication materials

description: This pack of replication materials contains (i) Stata data file Compiled_Data.dta; (ii) Stata do file data_analysis.do; (iii) Mathematica notebook Calculations.nb containing computations for Section 4.2.2 of the paper; (iv) zTree programs Sequential_3.ztt, Sequential_1_2.ztt, Sequential_2_1.ztt and Sequential_1_1_1.ztt corresponding to the 4 treatments in the experiment; (v) Experimental instructions for treatment (1,1,1); (vi) a readme.txt file with further instructions. The data was collected in the XSFS Lab at Florida State University in 2018-2019. A detailed description of the experiment is available in our article "Contests with sequential moves: An experimental study" forthcoming in the Journal of the Economic Science Association. A working paper version is available online at https://arxiv.org/abs/2409.06230
DOI: 10.6084/m9.figshare.19391585.v1
title: original data

description: Original data