cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16442169.v1
title: Additional file 4 of Integrative analysis of metabolome and transcriptome profiles provides insight into the fruit pericarp pigmentation disorder caused by ‘Candidatus Liberibacter asiaticus’ infection

description: Additional file 4: Supplemental Table S2. a: the phenotype and color analysis of citrus fruits (Citrus reticulata cv. ‘Shatangju’) at the maturity period. b: UHPLC-MS/MS data of carotenoids from different colored citrus fruit pericarps (Citrus reticulata cv. ‘Shatangju’) at the maturity period. c: Carotenoids quantify level from different colored citrus fruits (Citrus reticulata cv. ‘Shatangju’) at the maturity period. d: the equation for eighteen kinds of carotenoids.
DOI: 10.6084/m9.figshare.16442172
title: Additional file 5 of Integrative analysis of metabolome and transcriptome profiles provides insight into the fruit pericarp pigmentation disorder caused by ‘Candidatus Liberibacter asiaticus’ infection

description: Additional file 5: Supplemental Table S3. the significantly changed flavonoids and phenylpropanoids in WGF, TYBGF and WLYF compared with WDYF.
DOI: 10.6084/m9.figshare.16442172.v1
title: Additional file 5 of Integrative analysis of metabolome and transcriptome profiles provides insight into the fruit pericarp pigmentation disorder caused by ‘Candidatus Liberibacter asiaticus’ infection

description: Additional file 5: Supplemental Table S3. the significantly changed flavonoids and phenylpropanoids in WGF, TYBGF and WLYF compared with WDYF.
DOI: 10.6084/m9.figshare.16442175
title: Additional file 6 of Integrative analysis of metabolome and transcriptome profiles provides insight into the fruit pericarp pigmentation disorder caused by ‘Candidatus Liberibacter asiaticus’ infection

description: Additional file 6: Supplemental Table S4. Summary of the sequencing and genome comparison.
DOI: 10.6084/m9.figshare.16442175.v1
title: Additional file 6 of Integrative analysis of metabolome and transcriptome profiles provides insight into the fruit pericarp pigmentation disorder caused by ‘Candidatus Liberibacter asiaticus’ infection

description: Additional file 6: Supplemental Table S4. Summary of the sequencing and genome comparison.
DOI: 10.6084/m9.figshare.16442178.v1
title: Additional file 7 of Integrative analysis of metabolome and transcriptome profiles provides insight into the fruit pericarp pigmentation disorder caused by ‘Candidatus Liberibacter asiaticus’ infection

description: Additional file 7: Supplemental Table S5. The significantly changed genes in WGF, TYBGF and WLYF compared with WDYF.
DOI: 10.6084/m9.figshare.16442178
title: Additional file 7 of Integrative analysis of metabolome and transcriptome profiles provides insight into the fruit pericarp pigmentation disorder caused by ‘Candidatus Liberibacter asiaticus’ infection

description: Additional file 7: Supplemental Table S5. The significantly changed genes in WGF, TYBGF and WLYF compared with WDYF.
DOI: 10.6084/m9.figshare.16442181
title: Additional file 8 of Integrative analysis of metabolome and transcriptome profiles provides insight into the fruit pericarp pigmentation disorder caused by ‘Candidatus Liberibacter asiaticus’ infection

description: Additional file 8: Supplemental Table S6. KEGG of DEGs in the three comparisons.
DOI: 10.6084/m9.figshare.16442181.v1
title: Additional file 8 of Integrative analysis of metabolome and transcriptome profiles provides insight into the fruit pericarp pigmentation disorder caused by ‘Candidatus Liberibacter asiaticus’ infection

description: Additional file 8: Supplemental Table S6. KEGG of DEGs in the three comparisons.
DOI: 10.6084/m9.figshare.16442184
title: Additional file 9 of Integrative analysis of metabolome and transcriptome profiles provides insight into the fruit pericarp pigmentation disorder caused by ‘Candidatus Liberibacter asiaticus’ infection

description: Additional file 9: Supplemental Table S7. the genes involved in flavonoids and phenylpropanoids metabolism in WGF, TYBGF and WLYF compared with WDYF.
DOI: 10.6084/m9.figshare.16442184.v1
title: Additional file 9 of Integrative analysis of metabolome and transcriptome profiles provides insight into the fruit pericarp pigmentation disorder caused by ‘Candidatus Liberibacter asiaticus’ infection

description: Additional file 9: Supplemental Table S7. the genes involved in flavonoids and phenylpropanoids metabolism in WGF, TYBGF and WLYF compared with WDYF.
DOI: 10.6084/m9.figshare.16442238
title: Additional file 1 of Physical growth and neurodevelopment during the first year of life: a cohort study of the Japan Environment and Children’s Study

description: Additional file 1:
DOI: 10.6084/m9.figshare.16442238.v1
title: Additional file 1 of Physical growth and neurodevelopment during the first year of life: a cohort study of the Japan Environment and Children’s Study

description: Additional file 1:
DOI: 10.6084/m9.figshare.16442237
title: Additional file 1 of Web-based LinRegPCR: application for the visualization and analysis of (RT)-qPCR amplification and melting data

description: Additional file 1. Excel file comparing the output of the new Python with the original Windows LinRegPCR version. Also illustrating the escence axis.
DOI: 10.6084/m9.figshare.16442237.v1
title: Additional file 1 of Web-based LinRegPCR: application for the visualization and analysis of (RT)-qPCR amplification and melting data

description: Additional file 1. Excel file comparing the output of the new Python with the original Windows LinRegPCR version. Also illustrating the escence axis.
DOI: 10.6084/m9.figshare.16442252.v1
title: Additional file 6 of Web-based LinRegPCR: application for the visualization and analysis of (RT)-qPCR amplification and melting data

description: Additional file 6. This file contains example amplification and melting curve data in RDML format.
DOI: 10.6084/m9.figshare.16442252
title: Additional file 6 of Web-based LinRegPCR: application for the visualization and analysis of (RT)-qPCR amplification and melting data

description: Additional file 6. This file contains example amplification and melting curve data in RDML format.
DOI: 10.5517/ccdc.csd.cc27tzbd
title: CCDC 2080544: Experimental Crystal Structure Determination

description: Related Article: Luca De Angelis, Haifeng Zheng, Matthew T. Perz, Hadi Arman, Michael P. Doyle|2021|Org.Lett.|23|6542|doi:10.1021/acs.orglett.1c02352
DOI: 10.5517/ccdc.csd.cc28f5hd
title: CCDC 2098033: Experimental Crystal Structure Determination

description: Related Article: Kesatebrhan Haile Asressu, Chieh-Kai Chan, Cheng-Chung Wang|2021|RSC Advances|11|28061|doi:10.1039/D1RA05802A
DOI: 10.5517/ccdc.csd.cc27wp83
title: CCDC 2082185: Experimental Crystal Structure Determination

description: Related Article: Jiarong Zhang, Long Chen, Xing Dai, Lixi Chen, Fuwan Zhai, Weifeng Yu, Shikai Guo, Lijiang Yang, Lanhua Chen, Yugang Zhang, Linwei He, Changlun Chen, Zhifang Chai, Shuao Wang|2021|Chem.Commun.|57|8452|doi:10.1039/D1CC02446A
DOI: 10.5517/ccdc.csd.cc28fmw7
title: CCDC 2098479: Experimental Crystal Structure Determination

description: Related Article: Michael Bolte, Rene Königs, Magnus Rueping|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28fwk5
title: CCDC 2098717: Experimental Crystal Structure Determination

description: Related Article: Yi-Ting Hsieh, Ssu-Chia Huang, Shih-I. Lu, Hsiao-Hsun Wang, Tsai-Wen Chang, Chih-Chieh Wang, Gene-Hsiang Lee, Yu-Chun Chuang|2021|RSC Advances|11|26516|doi:10.1039/D1RA04622E
DOI: 10.5517/ccdc.csd.cc28g9rt
title: CCDC 2099126: Experimental Crystal Structure Determination

description: Related Article: Chao Sun, He Meng, Chen Chen, Haili Wei, Jialin Ming, Tamio Hayashi|2021|Org.Lett.|23|6311|doi:10.1021/acs.orglett.1c02088
DOI: 10.5281/zenodo.5263964
title: Visual Tracking of Entire Bumblebee Colonies Using Novel Pipeline Finds No Evidence of Gut-Brain Axis (Replicates 3, 4)

description: This archive contains raw data processed from video files taken of bumblebee colonies during replicates 3 and 4 of a study on the effect of the gut microbiome on social behaviour. Files ending with "_raw.csv" contain data on read tags, while ones ending with "_noID.csv" contain data on potential tags. Files are named as follows: R[replicate number][Baseline/Data][Day]R[recording session][HiveID][VideoID]
DOI: 10.5281/zenodo.5263963
title: Visual Tracking of Entire Bumblebee Colonies Using Novel Pipeline Finds No Evidence of Gut-Brain Axis (Replicates 3, 4)

description: This archive contains raw data processed from video files taken of bumblebee colonies during replicates 3 and 4 of a study on the effect of the gut microbiome on social behaviour. Files ending with "_raw.csv" contain data on read tags, while ones ending with "_noID.csv" contain data on potential tags. Files are named as follows: R[replicate number][Baseline/Data][Day]R[recording session][HiveID][VideoID]
DOI: 10.5281/zenodo.5263350
title: Visual Tracking of Entire Bumblebee Colonies Using Novel Pipeline Finds No Evidence of Gut-Brain Axis (Replicates 1, 2)

description: This archive contains raw data processed from video files taken of bumblebee colonies during replicates 1 and 2 of a study on the effect of the gut microbiome on social behaviour. Files ending with "_raw.csv" contain data on read tags, while ones ending with "_noID.csv" contain data on potential tags. Files are named as follows: R[replicate number][Baseline/Data][Day]R[recording session][HiveID][VideoID]
DOI: 10.5281/zenodo.5263349
title: Visual Tracking of Entire Bumblebee Colonies Using Novel Pipeline Finds No Evidence of Gut-Brain Axis (Replicates 1, 2)

description: This archive contains raw data processed from video files taken of bumblebee colonies during replicates 1 and 2 of a study on the effect of the gut microbiome on social behaviour. Files ending with "_raw.csv" contain data on read tags, while ones ending with "_noID.csv" contain data on potential tags. Files are named as follows: R[replicate number][Baseline/Data][Day]R[recording session][HiveID][VideoID]
DOI: 10.34740/kaggle/ds/1545325
title: US Census 2020
DOI: 10.5281/zenodo.5264692
title: Data files for manuscript "Prenatal phenotype of PNKP-related primary microcephaly associated with variants in the FHA and Phosphatase domain"

description: #2021-08-26<br> #Summary<br> This ZIP-file contains the Excel files used for the clinical and variant analyses of the PNKP protein/gene for the manuscript "Prenatal phenotype of PNKP-related primary microcephaly associated with variants in the FHA and Phosphatase domain". #Folder structure<br> ./ (parent directory containing this README file and all subfolders)<br> ./Clinical/ (contains an Excel sheet with complete clinical data of 4 affected individuals)<br> ./Variants/ (contains an Excel sheet with all variant annotation and domain information used in 6 sheets) #Files and checksums<br> 4B5BE914E77EB6511DF3DB94C6918E45 ./Clinical/FileS2_PNKP_Clinical.xlsx<br> 0228C6EF543D597C1C800B8D78E3097D ./Variants/FileS3_PNKP_Variants.xlsx
DOI: 10.5281/zenodo.5119302
title: Data files for manuscript "Prenatal phenotype of PNKP-related primary microcephaly associated with variants in the FHA and Phosphatase domain"

description: #2021-08-26<br> #Summary<br> This ZIP-file contains the Excel files used for the clinical and variant analyses of the PNKP protein/gene for the manuscript "Prenatal phenotype of PNKP-related primary microcephaly associated with variants in the FHA and Phosphatase domain". #Folder structure<br> ./ (parent directory containing this README file and all subfolders)<br> ./Clinical/ (contains an Excel sheet with complete clinical data of 4 affected individuals)<br> ./Variants/ (contains an Excel sheet with all variant annotation and domain information used in 6 sheets) #Files and checksums<br> 4B5BE914E77EB6511DF3DB94C6918E45 ./Clinical/FileS2_PNKP_Clinical.xlsx<br> 0228C6EF543D597C1C800B8D78E3097D ./Variants/FileS3_PNKP_Variants.xlsx
DOI: 10.6084/m9.figshare.16442814
title: Supplementary Material for: A Novel <b><i>LMX1B</i></b> Variant Identified in a Patient Presenting with Severe Renal Involvement and Thin Glomerular Basement Membrane

description: We report a case of nail-patella syndrome (NPS) with unusual thinning of the glomerular basement membrane (GBM) associated with a novel heterozygous variant in the <i>LMX1B</i> gene. A 43-year-old female patient with a previous diagnosis of NPS, referred to our hospital for persistent proteinuria, underwent a renal biopsy, which revealed minor glomerular abnormalities. She underwent a second renal biopsy at the age of 56 owing to the presence of persistent proteinuria and decline in serum albumin, meeting the diagnostic criteria for nephrotic syndrome. Light microscopy demonstrated glomerulosclerosis and cystic dilatation of the renal tubules. Notably, electron microscopy revealed unusual thinning of the GBM, which is quite different from typical biopsy findings observed in patients with NPS, characterized by thick GBM with fibrillary material and electron-lucent structures. Comprehensive genetic screening for 168 known genes responsible for inherited kidney diseases using a next-generation sequencing panel identified a novel heterozygous in-frame deletion-insertion (c.723_729delinsCAAC: p.[Ser242_Lys243delinsAsn]) in exon 4 of the <i>LMX1B</i> gene, which may account for the disrupted GBM structure. Further studies are warranted to elucidate the complex genotype-phenotype relationship between <i>LMX1B</i> and proper GBM morphogenesis.
DOI: 10.6084/m9.figshare.16442814.v1
title: Supplementary Material for: A Novel <b><i>LMX1B</i></b> Variant Identified in a Patient Presenting with Severe Renal Involvement and Thin Glomerular Basement Membrane

description: We report a case of nail-patella syndrome (NPS) with unusual thinning of the glomerular basement membrane (GBM) associated with a novel heterozygous variant in the <i>LMX1B</i> gene. A 43-year-old female patient with a previous diagnosis of NPS, referred to our hospital for persistent proteinuria, underwent a renal biopsy, which revealed minor glomerular abnormalities. She underwent a second renal biopsy at the age of 56 owing to the presence of persistent proteinuria and decline in serum albumin, meeting the diagnostic criteria for nephrotic syndrome. Light microscopy demonstrated glomerulosclerosis and cystic dilatation of the renal tubules. Notably, electron microscopy revealed unusual thinning of the GBM, which is quite different from typical biopsy findings observed in patients with NPS, characterized by thick GBM with fibrillary material and electron-lucent structures. Comprehensive genetic screening for 168 known genes responsible for inherited kidney diseases using a next-generation sequencing panel identified a novel heterozygous in-frame deletion-insertion (c.723_729delinsCAAC: p.[Ser242_Lys243delinsAsn]) in exon 4 of the <i>LMX1B</i> gene, which may account for the disrupted GBM structure. Further studies are warranted to elucidate the complex genotype-phenotype relationship between <i>LMX1B</i> and proper GBM morphogenesis.
DOI: 10.5517/ccdc.csd.cc2694th
title: CCDC 2034586: Experimental Crystal Structure Determination

description: Related Article: Helia Hollenhorst, Robert McDonald, Michael Ferguson, Laura Turculet|2021|Organometallics|40|2768|doi:10.1021/acs.organomet.1c00114
DOI: 10.5517/ccdc.csd.cc2694vj
title: CCDC 2034587: Experimental Crystal Structure Determination

description: Related Article: Helia Hollenhorst, Robert McDonald, Michael Ferguson, Laura Turculet|2021|Organometallics|40|2768|doi:10.1021/acs.organomet.1c00114
DOI: 10.5517/ccdc.csd.cc2694wk
title: CCDC 2034588: Experimental Crystal Structure Determination

description: Related Article: Helia Hollenhorst, Robert McDonald, Michael Ferguson, Laura Turculet|2021|Organometallics|40|2768|doi:10.1021/acs.organomet.1c00114
DOI: 10.5517/ccdc.csd.cc2694xl
title: CCDC 2034589: Experimental Crystal Structure Determination

description: Related Article: Helia Hollenhorst, Robert McDonald, Michael Ferguson, Laura Turculet|2021|Organometallics|40|2768|doi:10.1021/acs.organomet.1c00114
DOI: 10.5517/ccdc.csd.cc2694ym
title: CCDC 2034590: Experimental Crystal Structure Determination

description: Related Article: Helia Hollenhorst, Robert McDonald, Michael Ferguson, Laura Turculet|2021|Organometallics|40|2768|doi:10.1021/acs.organomet.1c00114
DOI: 10.5517/ccdc.csd.cc26950q
title: CCDC 2034592: Experimental Crystal Structure Determination

description: Related Article: Helia Hollenhorst, Robert McDonald, Michael Ferguson, Laura Turculet|2021|Organometallics|40|2768|doi:10.1021/acs.organomet.1c00114
DOI: 10.5517/ccdc.csd.cc26951r
title: CCDC 2034593: Experimental Crystal Structure Determination

description: Related Article: Helia Hollenhorst, Robert McDonald, Michael Ferguson, Laura Turculet|2021|Organometallics|40|2768|doi:10.1021/acs.organomet.1c00114
DOI: 10.5517/ccdc.csd.cc26952s
title: CCDC 2034594: Experimental Crystal Structure Determination

description: Related Article: Helia Hollenhorst, Robert McDonald, Michael Ferguson, Laura Turculet|2021|Organometallics|40|2768|doi:10.1021/acs.organomet.1c00114
DOI: 10.5517/ccdc.csd.cc26953t
title: CCDC 2034595: Experimental Crystal Structure Determination

description: Related Article: Helia Hollenhorst, Robert McDonald, Michael Ferguson, Laura Turculet|2021|Organometallics|40|2768|doi:10.1021/acs.organomet.1c00114
DOI: 10.5517/ccdc.csd.cc2694sg
title: CCDC 2034585: Experimental Crystal Structure Determination

description: Related Article: Helia Hollenhorst, Robert McDonald, Michael Ferguson, Laura Turculet|2021|Organometallics|40|2768|doi:10.1021/acs.organomet.1c00114
DOI: 10.5439/1663210
title: 1290-MHz Radar Wind Profiler: Precipitation Averages, operating in high power mode

description: 1290-MHz Radar Wind Profiler: Precipitation Averages, operating in high power mode
DOI: 10.5439/1663212
title: 1290-MHz Radar Wind Profiler: Precipitation Averages, operating in low power mode

description: 1290-MHz Radar Wind Profiler: Precipitation Averages, operating in low power mode
DOI: 10.5439/1663214
title: 1290-MHz Radar Wind Profiler: Low Mode Wind Averages

description: 1290-MHz Radar Wind Profiler: Low Mode Wind Averages
DOI: 10.5439/1663224
title: 1290-MHz Radar Wind Profiler: Precipitation Moments, operating in high power mode

description: 1290-MHz Radar Wind Profiler: Precipitation Moments, operating in high power mode
DOI: 10.5439/1663225
title: 1290-MHz Radar Wind Profiler: Precipitation Moments, operating in low power mode

description: 1290-MHz Radar Wind Profiler: Precipitation Moments, operating in low power mode
DOI: 10.5439/1663226
title: 1290-MHz Radar Wind Profiler: Wind Moments, operating in low power mode

description: 1290-MHz Radar Wind Profiler: Wind Moments, operating in low power mode
DOI: 10.5439/1663227
title: 1290-MHz Radar Wind Profiler: Precipitation Spectra, operating in high power mode

description: 1290-MHz Radar Wind Profiler: Precipitation Spectra, operating in high power mode
DOI: 10.5439/1663228
title: 1290-MHz Radar Wind Profiler: Precipitation Spectra, operating in low power mode

description: 1290-MHz Radar Wind Profiler: Precipitation Spectra, operating in low power mode
DOI: 10.5439/1663229
title: 1290-MHz Radar Wind Profiler: Wind Spectra, operating in low power mode

description: 1290-MHz Radar Wind Profiler: Wind Spectra, operating in low power mode
DOI: 10.5439/1764241
title: Rapid Refresh 20km

description: Rapid Refresh 20km forecast model data converted from GRIB data files generated by NCEP.
DOI: 10.5439/1764242
title: Rapid Refresh 20km (Syn)

description: Rapid Refresh 20km forecast model data converted from GRIB data files generated by NCEP. Subgrids of 4 adjacent points averaged together.
DOI: 10.5281/zenodo.5265853
title: Barth Syndrome Cardiac Tissue Proteomics Dataset

description: Spectral counts from LC/MS proteomics of left ventricular tissue from deidentified Barth Syndrome patients (BTHS), along with tissue from age-matched non-failing controls (NF) and patients with idiopathic dilated cardiomyopathy.
DOI: 10.5281/zenodo.5265852
title: Barth Syndrome Cardiac Tissue Proteomics Dataset

description: Spectral counts from LC/MS proteomics of left ventricular tissue from deidentified Barth Syndrome patients (BTHS), along with tissue from age-matched non-failing controls (NF) and patients with idiopathic dilated cardiomyopathy.
DOI: 10.25917/p6g3-zv62
title: Walyarta native bees collected by Dr Kit Prendergast July 2021
DOI: 10.6084/m9.figshare.16442880
title: Supplementary Material for: More Live Births in Primary Subfertile Intracytoplasmic Sperm Injection-Treated Women with High Normal TSH Levels

description: <b><i>Objectives:</i></b> The aim of this study was to analyze the fertility outcome in intracytoplasmic sperm injection (ICSI)-treated women across normal range thyroid-stimulating hormone (TSH) levels. Published results are inconclusive about optimal TSH levels and fertility. <b><i>Design:</i></b> This is a retrospective cohort study in 752 ICSI-treated women with predominantly severe male factor subfertility, starting treatment between the first of January 2008 and the first of March 2012 with a follow-up until 2014. <b><i>Participants/Materials, Setting, Methods:</i></b> Women aged 22–45 years with TSH 0.3–4.5 mIU/L without thyroid hormone substitution were included in Amsterdam UMC, Vrije Universiteit, Amsterdam, The Netherlands, an iodine-sufficient area. Demographic and baseline characteristics were compared between groups of patients based on TSH, using one-way ANOVA, Kruskal-Wallis ANOVA, and χ<sup>2</sup> test. The patient was the unit of analysis: all cumulative cycles per patient were analyzed up to and including the first ongoing pregnancy. The primary outcome was a cumulative live birth rate. Clinical pregnancy rate, pregnancy loss, and ongoing pregnancy rate were secondary outcomes. The χ<sup>2</sup> test and logistic regression were used to compare interquartile groups while adjusting for confounders. Logistic regression was used with the natural logarithm of TSH as a continuous predictor. Primary and secondary subfertile women were analyzed separately. <b><i>Results:</i></b> Analysis of the total cohort (<i>n</i> = 752) showed no difference in fertility outcomes across the normal TSH range. The cumulative live birth rate for the 4 groups of primary subfertile women (<i>n</i> = 455) was 76% in the upper TSH quartile compared to 56%, 60%, and 59% in the lower TSH quartiles. <b><i>Limitations:</i></b> Levels of thyroxine and presence of thyroid autoimmunity were not measured in this retrospective cohort study. <b><i>Conclusions:</i></b> The observation that a higher live birth rate was found in primary subfertile ICSI-treated women with high but allegedly normal TSH levels contributes to the hypothesis that in certain subfertile women in addition to a male factor, female factors such as subtle hypothyroidism and/or thyroid autoimmunity may play a role in keeping them from conception, which can be overcome by the process of ICSI.