cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3658985_d9
title: Additional file 4: Table S4. of Elucidation of the molecular responses of a cucumber segment substitution line carrying Pm5.1 and its recurrent parent triggered by powdery mildew by comparative transcriptome profiling

description: Differentially expressed genes identified by RNA-seq in SSL508 after 48 h of powdery mildew inoculation. IS = inoculated SSL508-28, NIS = non-inoculated control SSL508-28, FPKM = fragments per kilobase million. (XLS 521 kb)
DOI: 10.6084/m9.figshare.c.3658985_d7
title: Additional file 6: Table S6. of Elucidation of the molecular responses of a cucumber segment substitution line carrying Pm5.1 and its recurrent parent triggered by powdery mildew by comparative transcriptome profiling

description: GO enrichment analysis of differentially expressed genes in SSL508-28 after 48Â h of powdery mildew inoculation compared with its control. (XLS 179 kb)
DOI: 10.6084/m9.figshare.c.3658967_d7
title: Additional file 7: Table S7. of Transcriptome profiling reveals the genetic basis of alkalinity tolerance in wheat

description: The primer sequences for qRT-PCR analysis. (XLS 40 kb)
DOI: 10.6084/m9.figshare.c.3658985_d7.v1
title: Additional file 6: Table S6. of Elucidation of the molecular responses of a cucumber segment substitution line carrying Pm5.1 and its recurrent parent triggered by powdery mildew by comparative transcriptome profiling

description: GO enrichment analysis of differentially expressed genes in SSL508-28 after 48Â h of powdery mildew inoculation compared with its control. (XLS 179 kb)
DOI: 10.6084/m9.figshare.c.3658967_d7.v1
title: Additional file 7: Table S7. of Transcriptome profiling reveals the genetic basis of alkalinity tolerance in wheat

description: The primer sequences for qRT-PCR analysis. (XLS 40 kb)
DOI: 10.6084/m9.figshare.c.3658985_d5.v1
title: Additional file 9: Table S9. of Elucidation of the molecular responses of a cucumber segment substitution line carrying Pm5.1 and its recurrent parent triggered by powdery mildew by comparative transcriptome profiling

description: Differentially expressed genes encoding protein kinases in SSL508-28 and/or D8 after 48Â h of powdery mildew inoculation. (XLS 54 kb)
DOI: 10.6084/m9.figshare.c.3658985_d6.v1
title: Additional file 8: Table S8. of Elucidation of the molecular responses of a cucumber segment substitution line carrying Pm5.1 and its recurrent parent triggered by powdery mildew by comparative transcriptome profiling

description: Significant Kyoto encyclopedia of genes and genomes pathway of differentially expressed genes in D8 after 48Â h of powdery mildew inoculation compared with its control. (XLS 48 kb)
DOI: 10.6084/m9.figshare.c.3658985_d6
title: Additional file 8: Table S8. of Elucidation of the molecular responses of a cucumber segment substitution line carrying Pm5.1 and its recurrent parent triggered by powdery mildew by comparative transcriptome profiling

description: Significant Kyoto encyclopedia of genes and genomes pathway of differentially expressed genes in D8 after 48Â h of powdery mildew inoculation compared with its control. (XLS 48 kb)
DOI: 10.6084/m9.figshare.c.3658967_d6.v1
title: Additional file 2: Table S2. of Transcriptome profiling reveals the genetic basis of alkalinity tolerance in wheat

description: Differentially expressed genes in SR4 after alkalinity stress. Total number of genes differentially up- and down-regulated in roots under 100 mM alkaline stress treatment compared with the sample without alkalinity stress (P
DOI: 10.6084/m9.figshare.c.3658985_d5
title: Additional file 9: Table S9. of Elucidation of the molecular responses of a cucumber segment substitution line carrying Pm5.1 and its recurrent parent triggered by powdery mildew by comparative transcriptome profiling

description: Differentially expressed genes encoding protein kinases in SSL508-28 and/or D8 after 48Â h of powdery mildew inoculation. (XLS 54 kb)
DOI: 10.6084/m9.figshare.c.3658958_d2
title: Additional file 1: of Predicting potential drug-drug interactions by integrating chemical, biological, phenotypic and network data

description: Top 1000 novel interactions predicted by the ensemble model and the matrix perturbation model. (XLSX 75 kb)
DOI: 10.6084/m9.figshare.c.3658904_d2.v1
title: Additional file 4: of Nomogram integrating gene expression signatures with clinicopathological features to predict survival in operable NSCLC: a pooled analysis of 2164 patients

description: Prognostic value of the three genomic factors within mutational subsets of NSCLC in the overall pooled dateses, training set and validation set. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3658904_d1.v1
title: Additional file 3: of Nomogram integrating gene expression signatures with clinicopathological features to predict survival in operable NSCLC: a pooled analysis of 2164 patients

description: Univariable associations of clinicopathologic and genomic factors with risk of 5-year overall mortality in the training set. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3658904_d2
title: Additional file 4: of Nomogram integrating gene expression signatures with clinicopathological features to predict survival in operable NSCLC: a pooled analysis of 2164 patients

description: Prognostic value of the three genomic factors within mutational subsets of NSCLC in the overall pooled dateses, training set and validation set. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3658904_d1
title: Additional file 3: of Nomogram integrating gene expression signatures with clinicopathological features to predict survival in operable NSCLC: a pooled analysis of 2164 patients

description: Univariable associations of clinicopathologic and genomic factors with risk of 5-year overall mortality in the training set. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3658880_d1.v1
title: Additional file 1:  of 
                     In silico screening for candidate chassis strains of free fatty acid-producing cyanobacteria

description: Table S1. Classification of orthologous groups. Table S2. Proteins used to construct Fig.Â 1. Table S3. Compilation of control dataset. Table S4. Constructed target species dataset. Table S5. Comparison of FFASC and Model SEED. Table S6. Free fatty acid (FFA) protein/enzyme domains. Table S7. Orthologous group hit number matrix of 49 OGs and 128 (cyanobacteria and diatom) strains. Table S8. Ranked list of 125 strains using FFASC. Table S9. 128 strains clustered using K-mean. Table S10. Ranked list of 125 cyanobacteria using FFASC without optimization. (XLSX 373 kb)
DOI: 10.6084/m9.figshare.c.3658880_d1
title: Additional file 1:  of 
                     In silico screening for candidate chassis strains of free fatty acid-producing cyanobacteria

description: Table S1. Classification of orthologous groups. Table S2. Proteins used to construct Fig.Â 1. Table S3. Compilation of control dataset. Table S4. Constructed target species dataset. Table S5. Comparison of FFASC and Model SEED. Table S6. Free fatty acid (FFA) protein/enzyme domains. Table S7. Orthologous group hit number matrix of 49 OGs and 128 (cyanobacteria and diatom) strains. Table S8. Ranked list of 125 strains using FFASC. Table S9. 128 strains clustered using K-mean. Table S10. Ranked list of 125 cyanobacteria using FFASC without optimization. (XLSX 373 kb)
DOI: 10.15468/dl.68xqqa
title: Occurrence Download

description: A dataset containing 204 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Etrumeus sadina (Mitchill, 1814)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 204 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035593-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3657113_d5.v1
title: Additional file 3: of Comparative transcriptome analysis of two contrasting watermelon genotypes during fruit development and ripening

description: Excel file containing the DEGs in COS at five developmental stages. (XLSX 562Â kb)
DOI: 10.6084/m9.figshare.c.3657113_d5
title: Additional file 3: of Comparative transcriptome analysis of two contrasting watermelon genotypes during fruit development and ripening

description: Excel file containing the DEGs in COS at five developmental stages. (XLSX 562Â kb)
DOI: 10.6084/m9.figshare.c.3657113_d4.v1
title: Additional file 10: of Comparative transcriptome analysis of two contrasting watermelon genotypes during fruit development and ripening

description: Excel file containing the primer sequences used for real-time PCR. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3657113_d4
title: Additional file 10: of Comparative transcriptome analysis of two contrasting watermelon genotypes during fruit development and ripening

description: Excel file containing the primer sequences used for real-time PCR. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3657113_d3
title: Additional file 7: of Comparative transcriptome analysis of two contrasting watermelon genotypes during fruit development and ripening

description: Excel file containing the KEGG pathway annotations for 583 DEGs. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3657113_d3.v1
title: Additional file 7: of Comparative transcriptome analysis of two contrasting watermelon genotypes during fruit development and ripening

description: Excel file containing the KEGG pathway annotations for 583 DEGs. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3657113_d2.v1
title: Additional file 4: of Comparative transcriptome analysis of two contrasting watermelon genotypes during fruit development and ripening

description: Excel file containing the DEGs in LSW177 at five developmental stages. (XLSX 491Â kb)
DOI: 10.6084/m9.figshare.c.3657113_d1.v1
title: Additional file 8: of Comparative transcriptome analysis of two contrasting watermelon genotypes during fruit development and ripening

description: Excel file containing the TF annotations. (XLSX 33Â kb)
DOI: 10.6084/m9.figshare.c.3657113_d2
title: Additional file 4: of Comparative transcriptome analysis of two contrasting watermelon genotypes during fruit development and ripening

description: Excel file containing the DEGs in LSW177 at five developmental stages. (XLSX 491Â kb)
DOI: 10.6084/m9.figshare.c.3657113_d1
title: Additional file 8: of Comparative transcriptome analysis of two contrasting watermelon genotypes during fruit development and ripening

description: Excel file containing the TF annotations. (XLSX 33Â kb)
DOI: 10.6084/m9.figshare.c.3657098_d4
title: Additional file 2: Table S2. of QTLs for stomatal and photosynthetic traits related to salinity tolerance in barley

description: Skewness analysis of average data of all phenotypic traits from the DH lines used for QTL mapping in this study. (XLSX 106 kb)
DOI: 10.5281/zenodo.14498382
title: The three-dimensional structures of all compounds in the library in both PDB and PDBQT formats, which were used for TRPV3-targeted in silico screening

description: These files contain the three-dimensional structures (in both PDB and PDBQT formats) of all compounds from our natural product library that were used for in silico screening to identify novel TRPV3 inhibitors. The complete molecular coordinate files were essential for conducting structure-based virtual screening targeting the TRPV3 channel.
DOI: 10.5281/zenodo.14498383
title: The three-dimensional structures of all compounds in the library in both PDB and PDBQT formats, which were used for TRPV3-targeted in silico screening

description: These files contain the three-dimensional structures (in both PDB and PDBQT formats) of all compounds from our natural product library that were used for in silico screening to identify novel TRPV3 inhibitors. The complete molecular coordinate files were essential for conducting structure-based virtual screening targeting the TRPV3 channel.
DOI: 10.15468/dl.tkkceg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Etrumeus wongratanai DiBattista, Randall & Bowen, 2012",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035595-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3656843_d1
title: MOESM1 of Identification of target genes for spermatogenic cell-specific KRAB transcription factor ZFP819 in a male germ cell line

description: Additional file 1: Table S1. List of primers used in this study. Table S2. Downregulated genes by ZFP819 using microarray analysis. Table S3. Promoter sites bound by ZFP819 using ChIP-chip analysis.
DOI: 10.6084/m9.figshare.c.3654725_d8.v1
title: Additional file 2: of Disruption of the microbiota across multiple body sites in critically ill children

description: Summary of all samples collected from PICU and non-PICU subjects in this study with relevant clinical information. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.c.3654737_d5.v1
title: Additional file 4: of Frequency of influenza H3N2 intra-subtype reassortment: attributes and implications of reassortant spread

description: Separate segment and full genome ML phylogenetic trees in machine readable (Newick) formats (9 sheets). (XLSX 267 kb)
DOI: 10.6084/m9.figshare.c.3654737_d4.v1
title: Additional file 5: of Frequency of influenza H3N2 intra-subtype reassortment: attributes and implications of reassortant spread

description: BEAST XML files and a table of BEAST run seeds. (XLSX 407 kb)
DOI: 10.6084/m9.figshare.c.3654737_d3.v1
title: Additional file 6: of Frequency of influenza H3N2 intra-subtype reassortment: attributes and implications of reassortant spread

description: Reassortant lineage passaging information. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3654737_d2.v1
title: Additional file 2: of Frequency of influenza H3N2 intra-subtype reassortment: attributes and implications of reassortant spread

description: Reference sequence accession numbers: a) IVR and IRD and b) GISAID. (XLSX 181 kb)
DOI: 10.6084/m9.figshare.c.3654725_d1.v1
title: Additional file 1: of Disruption of the microbiota across multiple body sites in critically ill children

description: Summary of study population. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3654737_d1.v1
title: Additional file 1: of Frequency of influenza H3N2 intra-subtype reassortment: attributes and implications of reassortant spread

description: a) Nested PCR primers and b) universal and segment-specific primers. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3652424_d6.v1
title: Additional file 4: of LNDriver: identifying driver genes by integrating mutation and expression data based on gene-gene interaction network

description: The results of KEGG and GO enrichment analysis in HNSC. (XLS 114 kb)
DOI: 10.6084/m9.figshare.c.3652424_d5.v1
title: Additional file 1: of LNDriver: identifying driver genes by integrating mutation and expression data based on gene-gene interaction network

description: The candidate drivers with p-values less than 0.05 in HNSC. (XLS 20 kb)
DOI: 10.6084/m9.figshare.c.3652424_d4.v1
title: Additional file 2: of LNDriver: identifying driver genes by integrating mutation and expression data based on gene-gene interaction network

description: The candidate drivers with p-values less than 0.05 in KIRC. (XLS 19 kb)
DOI: 10.6084/m9.figshare.c.3652415_d5.v1
title: Additional file 5 of Screening lifespan-extending drugs in Caenorhabditis elegans via label propagation on drug-protein networks

description: The drug-disease bipartite network used in the paper, which includes 18,317 drug-protein interactions between 813 unique drugs and 3,660 unique proteins. (XLSX 440 kb)
DOI: 10.6084/m9.figshare.c.3652424_d3.v1
title: Additional file 3: of LNDriver: identifying driver genes by integrating mutation and expression data based on gene-gene interaction network

description: The candidate drivers with p-values less than 0.05 in THCA. (XLS 19 kb)
DOI: 10.15468/dl.7hv288
title: Occurrence Download

description: A dataset containing 90039 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "Geometry POLYGON ((116.8213 -34.8712, 117.7196 -34.8712, 117.7196 -33.97288, 116.8213 -33.97288, 116.8213 -34.8712))",
 "Year is less than 2025"
 ]
}

 The dataset includes 90039 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035594-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3651806_d4.v1
title: Additional file 1 of Drug-target interaction prediction via class imbalance-aware ensemble learning

description: Drug IDs. This file contains the DrugBank IDs of the drugs used in this study. (46 kb TXT)
DOI: 10.6084/m9.figshare.c.3651806_d5.v1
title: Additional file 5 of Drug-target interaction prediction via class imbalance-aware ensemble learning

description: List of target features. This file contains the names of the target features used in this study. More details on the features can be found at: http://bidd2.nus.edu.sg/prof/manual/prof.htm (16 kb TXT)
DOI: 10.6084/m9.figshare.c.3651806_d3.v1
title: Additional file 3 of Drug-target interaction prediction via class imbalance-aware ensemble learning

description: Drug-target interaction matrix. This file contains the known drug-target interactions in the form of a matrix, where rows represent the drugs, and the columns represent the targets. Drug-target pairs that interact have a 1 in their corresponding cell and 0 otherwise. (37500 kb TXT)
DOI: 10.6084/m9.figshare.c.3651806_d1.v1
title: Additional file 4 of Drug-target interaction prediction via class imbalance-aware ensemble learning

description: List of drug features. This file contains the names of the drug features used in this study. More details on the features can be found at: http://bioconductor.org/packages/release/bioc/html/Rcpi.html (1 kb TXT)
DOI: 10.6084/m9.figshare.c.3651806_d2.v1
title: Additional file 6 of Drug-target interaction prediction via class imbalance-aware ensemble learning

description: Drug feature vectors. This file contains the feature vectors for the drugs. (6180 kb TXT)
DOI: 10.6084/m9.figshare.c.3651743_d13.v1
title: Additional file 7: of iCAGES: integrated CAncer GEnome Score for comprehensively prioritizing driver genes in personal cancer genomes

description: Summary of backward feature selection for selecting the best set of predictors for the radial SVM model. (XLSX 54Â kb)
DOI: 10.6084/m9.figshare.c.3651743_d12.v1
title: Additional file 3: of iCAGES: integrated CAncer GEnome Score for comprehensively prioritizing driver genes in personal cancer genomes

description: Table of targeted therapy TCGA samples with progressive disease. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3651779_d7.v1
title: Additional file 8: Table S2. of Arabidopsis PRC1 core component AtRING1 regulates stem cell-determining carpel development mainly through repression of class I KNOX genes

description: Original data and statistical analysis for qRT-PCR analyses. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3651743_d11.v1
title: Additional file 12: of iCAGES: integrated CAncer GEnome Score for comprehensively prioritizing driver genes in personal cancer genomes

description: Output of iCAGES drug score on the case study from Imielinski et al. (XLSX 60Â kb)
DOI: 10.6084/m9.figshare.c.3651743_d10.v1
title: Additional file 11: of iCAGES: integrated CAncer GEnome Score for comprehensively prioritizing driver genes in personal cancer genomes

description: Output of iCAGES gene score on the case study from Wagle et al. (XLSX 54Â kb)
DOI: 10.6084/m9.figshare.c.3651743_d9.v1
title: Additional file 10: of iCAGES: integrated CAncer GEnome Score for comprehensively prioritizing driver genes in personal cancer genomes

description: Output of iCAGES gene score on the case study from Imielinski et al. (XLSX 46Â kb)
DOI: 10.6084/m9.figshare.c.3651743_d7.v1
title: Additional file 8: of iCAGES: integrated CAncer GEnome Score for comprehensively prioritizing driver genes in personal cancer genomes

description: Parameter tuning for radial SVM with fivefold cross-validation on the training dataset. (XLSX 64Â kb)
DOI: 10.6084/m9.figshare.c.3651767_d2.v1
title: Additional file 2: of LocExpress: a web server for efficiently estimating expression of novel transcripts

description: This file lists human and mouse datasets used to build the LocExpress web server, including reads mapping information. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3651743_d6.v1
title: Additional file 2: of iCAGES: integrated CAncer GEnome Score for comprehensively prioritizing driver genes in personal cancer genomes

description: Table of targeted therapy TCGA samples with complete or partial response. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.c.3651743_d5.v1
title: Additional file 5: of iCAGES: integrated CAncer GEnome Score for comprehensively prioritizing driver genes in personal cancer genomes

description: Summary of 11 point-coding variant deleteriousness prediction component scores used in the first layer of iCAGES. (XLSX 35Â kb)
DOI: 10.15468/dl.gzhpgu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clupea micropus Temminck & Schlegel, 1846",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035597-241126133413365/datasets/export for details.
DOI: 10.15468/dl.e6z9zp
title: Occurrence Download

description: A dataset containing 6152 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scutia (Comm. ex DC.) Brongn."
 ]
}

 The dataset includes 6152 records from 214 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035596-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13300249
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.17312617
title: Dataset - A Standardized Evaluation of QoS/QoE Performance in 5G and Beyond-5G Systems

description: The present dataset is open-sourced with the paper "A Standardized Evaluation of QoS/QoE Performance in 5G and Beyond-5G Systems".

The paper is authored by Giuseppe Caso, Mohammad Rajiullah, Anna Brunstrom, Luca De Nardis, Ozgu Alay, Marco Neri, and Maria-Gabriella Di Benedetto. 

If you use the dataset for your own research activities and publications, please consider citing the paper as follows: 

G. Caso et al., "A Standardized Evaluation of QoS/QoE Performance in 5G and Beyond-5G Systems," in IEEE Communications Standards Magazine, pp. 1-7, 2025.

@article{caso2025evaluation,  title={{A Standardized Evaluation of QoS/QoE Performance in 5G and Beyond-5G Systems}},  author={Caso, Giuseppe and Rajiullah, Mohammad and Brunstrom, Anna, and De Nardis, Luca and Alay, Ozgu and Neri, Marco and Di Benedetto, Maria-Gabriella}, journal={IEEE Communications Standards Magazine},  pages={1--7},  year={2025}}

 

A detailed description of the dataset is provided in the paper, and the README file provides additional details.

Contact Giuseppe Caso (giuseppe.caso@kau.se) for more information on the dataset and potential access to additional data.