cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26131453.v4
title: HBA_reference

description: description
DOI: 10.6084/m9.figshare.27211980.v1
title: Motoo2024_Fig4_Average_intensity_per_unit_area_rev2.xlsx

description: Number of cells (n), Average cell area and Average intensity are included for each clone.
DOI: 10.6084/m9.figshare.28229102.v1
title: Cell cycle dynamics & EdU Index (Fig. 5B & Fig S7C)

description: Juveniles were dissociated in pools of 15 polyps. Prior dissociation were labeled for 30 min with EdU (100uM, 2%DMSO) over several time points after feeding, and then dissociated and fixed using Trypsin/formaldehyde. Cells were stained with 1μg/ml FxCycle violet DNA dye (Invitrogen), EdU was labelled with Alexa647 using a Click-it reaction, and mOr2 was detected with anti-dsRed (Rabbit, Takara Bio Clontech 632496) and goat-anti-rabbit Alexa568.Flow cytometry was performed a BD LSRFortessa (BD Life Sciences) and the mOr2 and EdU positive cells in samples were determined based on Alexa568 and Alexa647 fluorescence in comparison with the negative controls on cells within the cell cycle (based on DNA staining) using FlowJoV10.8 (BD Life Sciences)..wsp files contain the samples, gating strategy and cell populations used for the analysis in FlowJo.fcs files represent the individual flow cytometry output files that were analysed in the .wsp file
DOI: 10.17632/8m7gfj2knd
title: Effect of Immunonutrition During Concurrent Chemoradiotherapy on Acute Oral Mucositis in Head and Neck Cancer Patients: A Prospective Randomized Study

description: This dataset contains data from the clinical study "Effect of Immunonutrition During Concurrent Chemoradiotherapy on Acute Oral Mucositis in Head and Neck Cancer Patients: A Prospective Randomized Study," which compared the outcomes of head and neck cancer patients who received immunonutrition versus control.
DOI: 10.6084/m9.figshare.12782543.v2
title: Metagenome Assembled Genomes

description: Metagenome Assembled Genomes (MAGs) from 16 Australian and 24 Global soils. For sample metadata see Supplementary Table 2 and for MAG metadata and taxonomic affiliation see Supplementary Table 3.
DOI: 10.6084/m9.figshare.16930180.v1
title: Data and code accompanying Waldock et al. (2021) A quantitative review of abundance-based species distribution models. Ecography.

description: Accompanying data and code for Waldock et al. (2021) A quantitative review of abundance-based species distribution models. Ecography. 44: 1-18. DOI: 10.1111/ecog.05694
DOI: 10.6084/m9.figshare.24464200.v1
title: Figure 1_Supplementary Table 1_Enrollment by device type(JMP)

description: The dataset for the article "The current utilization status of wearable devices in clinical research".Analyses were performed by utilizing the JMP Pro 16.10.The file extension "jrp" is a file of the statistical analysis software JMP, which contains both the analysis code and the data set.In case JMP is not available, a "csv" file as a data set and JMP script, the analysis code, are prepared in "rtf" format.JMP repot files used to create the figure（Figure 1 ）and table (Supplementary Table 1) ,including the csv dataset of JMP repot files and JMP scripts.Figure 1 The results of mean of enrollment comparison by typeSupplementary Table 1. The results of mean of enrollment comparison based on the type of deviceEnrollment by type.jrpAnalysis by Model dataset.csvEnrollment by type.rtfApple WatchApple Watch
DOI: 10.17632/fd582dbgkw
title: Commodity Prices and Banking Crises - replication for Eberhardt & Presbitero

description: We provide the Stata do and data files for the empirical analysis in Eberhardt and Presbitero, Commodity Prices and Banking Crises, Journal of International Economics (forthcoming). This includes a dataset for 60 Low-Income Countries (1963-2015) and a separate dataset for 40 'peripheral' economies (1848-1938).
DOI: 10.6084/m9.figshare.27917454.v1
title: EPI-Clone dataset M.7: Native hematopoiesis: old and young mouse (replicate 2)

description: <b>ASSAYS</b>:DNAm: DNA methylation data, containing binary observations (0: amplicon not observed, i.e. dropout or absence of DNA methylation, 1: amplicon observed, i.e. DNA methylation). See the paper on scTAMseq<b>DIMENSIONALITY REDUCTION</b>pca: PCA performed on the DNAm dataumap: UMAP computed on the DNAm data<b>METADATA</b>Sample: The experiment that the cell is from, values are "Old" for the 100-wk mouse and “Young” for the 12-wk mouseCellType: Cell type annotationPseudotime: Differentiation pseudotimePerformanceNonHhaI: Performance of the control amplicons in that cellTotalCounts: Number of reads on the Non-HhaI control amplicons
DOI: 10.6084/m9.figshare.1454521.v3
title: Nobel Prize winners in Medicine or Physiology

description: These data support an article submitted to PLoS ONE: Do Nobel Laureates Create Prize-Winning Networks? An Analysis of Collaborative Research in Physiology or Medicine C.S. Wagner et al. 2015
DOI: 10.6084/m9.figshare.19875217.v2
title: Anxiety Dataset 2022

description: The peer-reviewed paper associated with this dataset has now been published in MDPI Data, and can be accessed here: https://www.mdpi.com/2306-5729/7/9/132. 
Please cite this when using the dataset. 
<strong>To download data files, please go to Version 1.</strong>
<strong>To read the paper, please go to Version 2.</strong>
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Nineteen volunteers (14 males and 5 females; age range: 18--56 years) from different cultural backgrounds participated in the data collection experiment. These participants were all students recruited from Simon Fraser University, Canada. The experiment was set up to induce stress in an alternating manner: positive video (nonstress induction) followed by negative video (stress induction). 
<br>
Metadata can be downloaded from here:
https://github.com/Elgendi/Anxiety-Dataset-MetaData-2022
DOI: 10.6084/m9.figshare.22128512.v3
title: Data and code for Knight et al. 2024 Nature doi:10.1038/s41586-024-08185-3

description: Data files and code for analysis and figures as in Knight et al. 2024 (accepted). Full description of experimental setup, sampling, and data analyses available in that paper.
DOI: 10.6084/m9.figshare.23823531.v2
title: Genome assemblies and annotations of two species of porcelain crabs, <i>Petrolisthes cinctipes</i> and <i>Petrolisthes manimaculis</i> (Anomura: Porcellanidae)

description: The genomes of the two species, <i>Petrolisthes cinctipes</i> and <i>Petrolisthes manimaculis</i>, assembled into 0.9-1.5 Gb, of which 60-74% was repetitive, and had 42-46K protein coding genes. CSV files are used to link the IDs used in the paper to the NCBI accessions.
DOI: 10.6084/m9.figshare.28477904.v2
title: <b>Serum Metabolomic Characteristics of COVID-19 Patients Co-infection with Echovirus</b>

description: Currently, the Omicron variant of the Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) continues to circulate globally. In our multiplex respiratory pathogen detection, we identified numerous instances of co-infection with Echovirus (ECHO) among Coronavirus Disease 2019 (COVID-19) patients, which exacerbated the clinical symptoms of these patients. Such co-infections are likely to impact the subsequent medical treatment. To date, there are no reports on the pathogenic mechanisms related to COVID-19 co-infected with ECHO. Therefore, this study employed the TM Widely-Targeted metabolomics approach to analyze the serum metabolomes of COVID-19 patients with single SARS-CoV-2 infection (COVID-19), COVID-19 patients co-infected with ECHO (COVID-19+ECHO), and healthy individuals (Control) recruited from routine physical examinations during the same period. Concurrent clinical laboratory tests were performed on the patients to reveal the differences in metabolomic characteristics between the COVID-19 patients and the COVID-19+ECHO patients, as well as to explore potential metabolic pathways that may exacerbate disease progression. Our findings indicate that both clinical examination indicators and the pathways enriched by differential metabolites confirm that patients with dual infection exhibit higher inflammatory and immune responses compared to those with single COVID-19 infections. This difference is likely reflected through abnormalities in the glycerophospholipid metabolic pathway, with the metabolite Sn-Glycero-3-Phosphocholine playing a crucial role in this process. Finally, we established a diagnostic model based on logistic regression using five differential metabolites, which accurately differentiates between the dual infection population and the single COVID-19 infection population (AUC = 0.828).
DOI: 10.6084/m9.figshare.5048614.v1
title: Supplemental Table 5 from Topological features of a gene co-expression network predict patterns of natural diversity in environmental response

description: GO Functional enrichments for the largest over-enriched Drought module
DOI: 10.6084/m9.figshare.5114134.v1
title: Sorbus domestica chorology

description: Distribution map of service tree (<i>Sorbus domestica</i>)<br><br>These maps were produced by combining numerous and heterogeneous data collected from atlas monographs providing complete species distribution maps, from national to regional atlases, occurrence geodatabases and scientific literature.<br>The maps were created using ESRI shapefiles (*.shp, *.shx, *.dbf, *.prj files) archived in the ZIP file. Species range is mapped with polygon features (name suffix “plg”), which define continuous areas of occupancy of the species, and with point features (name suffix “pnt”), which identify more fragmented and isolated populations. If synanthropic occurrences are reported outside the species natural range, additional point and/or polygon shapefiles are also present (suffix “syn”).<br>All polygon borders delimiting the range are generalized across the mainland and sea boundaries, and not clipped to a specific coastline. This offers the possibility to mask sea areas, or to clip and extract the terrestrial range parts using GIS data layers of the users’ choice. <br><br>Please cite as:<br>Caudullo, G., Welk, E., San-Miguel-Ayanz, J., 2017. Chorological maps for the main European woody species. Data in Brief 12, 662-666. DOI: doi.org/10.1016/j.dib.2017.05.007 <br><br>Additional information and used references are on 'supplementary materials' document:<br>https://doi.org/10.6084/m9.figshare.5091901<br><br>Chorological maps are part of the "European Atlas of Forest Tree Species" project:<br>https://w3id.org/mtv/FISE-Comm/v01
DOI: 10.17632/28kv3gsgcz
title: geobs

description: 'geobs' is a database about geophysical observation (radon, air ionization, CO2 and CO, Black Sea level, magnetic field, meteorological information, infrasound, ULF - VLF radio data, telluric currents, atmospheric static electricity etc.). These data are acquired in real time, displayed ('geobs panel example.jpg') and sent to the database at 5 minute intervals. From hour to hour, complete files are sent in which the sampling period varies from 1 s to 4 hours (in the case of radon). If limits are exceeded, warning messages are sent in real time. Monitoring stations and format of data are described in 'geobs st 5a.accdb' and 'geobs st 5a.inp' files (position, equipment type, data description). An example of data files are in the uploaded archives (format ASCII text with TAB delimiter). The data from data base can be accessed through an API (JSON and csv formats).
DOI: 10.17632/7ftr5cs4xf
title: Road Surface Temperature on motorways, primary roads and urban roads

description: The data covers road surface temperatures collected along motorways, primary and urban roads in summer 2024. Surface temperature was measured using a Raytek CM sensor mounted on a van. Trajectories of the van were collected using an Applanix POS LV220 positioning system.
The road surface temperatures were collected in the right wheel path with a driving speed of 60 km/h on motorways/primary roads and as traffic allowed on urban roads.
The road surface temperatures were averaged over 10 m sections on motorways and primary roads and over 5 m in urban environmemt. 
All data points contain x,y,z coordinates, heading, date and time and road surface temperature.
The data was collected in the project "HeatMon - Towards a monitoring service enabling climate change adaption measures" and was used as ground truth vor valiadation of surface temperature predictions using remote sensing data sources including ISS/ECOSTRESS.
An overview of the project can be found at https://projekte.ffg.at/projekt/4711883
The IBK dataset covers the daily temperature variation of urban roads on a hot summer day in 2024 and can be used for modelling of diurnal (surface) temperature variations in urban areas.
DOI: 10.6084/m9.figshare.14880306.v1
title: The coseismic GPS displacements due to the Maduo earthquake.docx

description: The coseismic GPS displacements due to the 2021 Maduo earthquake
DOI: 10.6084/m9.figshare.22773458.v1
title: PLoS Limited Data Set.xlsx

description: Data derived from a study comparing online education with traditional, conference-style education by diabetes care providers in Rwanda. Data set includes: Demographic data - Deidentified demographic data detailing gender, practice location, medical experience, and frequency of exposure to diabetes care. Efficacy Data - Insulin adjustment skills were tested before and after baseline education, as well as after online review of learning materials at 4, 8, and 12 months. All assessment scores are out of 10, with no repeated questions between assessments. Time between assessments is measured in days. Feasibility Data - Likert scale responses to factors affecting feasibility of completing study activities - Likert scale responses measuring subjective perception of potential barriers to future educational initiatives.
DOI: 10.17632/hd9p858nn9
title: nccrFOAM suite: Nonlinear coupled constitutive relation solver in the OpenFOAM framework for rarefied and microscale gas flows with vibrational non-equilibrium

description: The nccrFOAM suite is a collection of nonlinear coupled constitutive relation (NCCR) solvers for rarefied and microscale gas flows with vibrational non-equilibrium, in conjunction with the conservation laws implemented in the foam-extend framework which is an open-source solver with a General Public License (GPL 3). nccrFOAM solvers are developed as an extension to the dbnsTurbFoam solver by implementing additional algebraic constitutive relations for the non-conserved quantities of the stress tensor and heat flux vector. In contrast to Navier-Stokes-Fourier (NSF) solvers that employ first-order constitutive relations to calculate non-conserved quantities and consequently suffer from obvious shortcomings when simulating gas flows in high non-equilibrium, the second-order NCCR framework presents a novel alternative to simulate rarefied and microscale gas flows in a better and a more intuitive manner. In addition to the solver for monoatomic gases, the solvers are for the first time implemented for diatomic and polyatomic gases with translational-rotational and vibrational degrees of freedom based on second-order constitutive models in a three-dimensional framework. Towards this, a new foam-extend library has been written based on the two-temperature formulation to handle the translational-rotational and vibrational modes. The new foam-extend solver was validated for several representative problems, and an exhaustive list of tutorials is documented. The solver will certainly benefit the rarefied and microscale gas dynamics and hypersonics communities at large interested in flows involving high degrees of rarefaction, speed, and temperature variations.
DOI: 10.17632/ysx3m9p3s3
title: FEV1/FEV6 DPD COPD data

description: this data was collected for evaluation of FEV1/FEV6 as surrogate for FEV1/FVC for COPD diagnosis
DOI: 10.6084/m9.figshare.24534625.v2
title: Table S3 from Reconstructing Pleistocene Australian herbivore megafauna diet using calcium and strontium isotopes

description: Data subsamples
DOI: 10.6084/m9.figshare.28049657.v1
title: Cotton Flower Tracking Dataset

description: This contains the portion of the cotton flower dataset with full tracking annotations. It is organized in YOLO format with an extra column for the track ID, similar to how YOLOv8 outputs tracking results. That is, the label format is:class, center_x, center_y, width, height, track_idIt is separated into 46 individual frame sequences, with sequences divided between training, testing, and validation splits.
DOI: 10.6084/m9.figshare.28465208.v1
title: <b>Chromosome-level genome assembly of the </b><b>scalloped spiny lobster</b><b> </b><b><i>Panulirus </i></b><b><i>homarus</i></b>

description: We present a chromosome-level reference genome for <i>P. homarus</i> constructed using PacBio long-read sequencing and Hi-C data. The genome assembly size is 2.61 Gb, with a scaffold N50 of 36.69 Mb. The assembled sequences were anchored to 73 chromosomes, covering 96.05% of the total genome. A total of 25,580 protein-coding genes were predicted, and 99.98% of the genes were functionally annotated using various protein databases.
DOI: 10.6084/m9.figshare.6406148.v2
title: GNN Forest Structure (Species-Size) Maps Western US

description: This data set is obtained from the Forestry Group at Oregon State and it is an input to the analysis presented in this data set. <br>Digital GNN imputation maps are provided as 30-m-resolution ArcGIS grids, where the grid value is a unique plot number that links to the plot database. Selected vegetation variables from the plot database are joined as items in the grid to facilitate viewing and exploratory spatial analysis. Metadata for the vegetation variables are included with the grids and in the plot database. Dates for maps developed from GNN species-size models are determined by the vintage of the satellite imagery used in their development.<br>
DOI: 10.17632/4yz6smzktf
title: Stress Distribution of the Maxillary Sinus Membrane in Restoring Highly Atrophic Edentulous Ridges with Dental Implants

description: 1. The detailed data of all subjects and results of related parameters.
2. Schematic showing the concept of stress distribution.
DOI: 10.6084/m9.figshare.20931226.v1
title: Supplementary Material and Raw Datasets of Manipulandum Studies detailed in the Article "Human monosynaptic reflexes show precise short-term gain adaptation after prior motion"

description: <strong>Supplementary Data: </strong> Human monosynaptic reflexes show precise short-term gain adaptation after prior motion<strong>.</strong>
DOI: 10.6084/m9.figshare.21713885.v1
title: SNUMAT Hybrid bandgap

description: Adapted from: https://figshare.com/ndownloader/files/2449527 <pre><code>@article{kim2020band,<br> title={A band-gap database for semiconducting inorganic materials calculated with hybrid functional},<br> author={Kim, Sangtae and Lee, Miso and Hong, Changho and Yoon, Youngchae and An, Hyungmin and Lee, Dongheon and Jeong, Wonseok and Yoo, Dongsun and Kang, Youngho and Youn, Yong and others},<br> journal={Scientific Data},<br> volume={7},<br> number={1},<br> pages={1--6},<br> year={2020},<br> publisher={Nature Publishing Group}<br> }</code></pre>
DOI: 10.6084/m9.figshare.24313855.v1
title: <b>Genome for</b><b> </b><b><i>Raphanus sativus L. Bakdal</i></b>

description: Bakdal genome will be an additional genetic resource for the Radish elite lines which can be used as a basis and reference for more detailed study into genetic variation responsible for stable elite lines. In addition, this may be a valuable resource for conducting comparative analysis among elite and wild varieties in the genus<i> </i><i>Raphanus</i>, which could improve the genome selection process in molecular-assisted breeding.
DOI: 10.6084/m9.figshare.4056441.v1
title: Relationship between cortical myeloarchitecture and electrophysiological networks

description: Supplementary Data to http://www.pnas.org/content/early/2016/11/07/1608587113.abstract.<br>Please find adjacency matrices for individual MEG frequency bands (AAL atlas regions) and a structural-covariance matrix of cortical myeloarchitecture measured using magnetisation transfer at 7T MRI. <br>For further information please contact Benjamin.Hunt@sickkids.ca
DOI: 10.6084/m9.figshare.19467614.v2
title: Fig. 4_gastric juice.xlsx

description: Viable plate count of W. coagulans strain LMG S-31876 in the presence of simulated gastric juice (pH 3.0) and control (pH 7.2). The results are expressed as mean ± standard deviation of log10 CFU/mL.
DOI: 10.6084/m9.figshare.25514593.v1
title: High-Speed Run Values (Sample Game)

description: Sample game of anonymised football run data. Showing all of the high speed runs made in that match with associated values at the start of the run, the mean value during the run and the accrued value (calculated as the difference). This is calculated for the in-possession team which may be both teams if possession changes over the course of the run, this is distinguished by the opposition value columns and the own-team value columns.
DOI: 10.6084/m9.figshare.28936874.v1
title: 《Quantifying the Impact of Vegetation on Carbon Monoxide Reduction Using Multi-Source Remote Sensing in China》

description: As climate change and environmental pollution intensify, reducing carbon monoxide (CO) emissions has become a focal point of global environmental governance. Existing research often relies on site-specific observational data, limiting continuous spatiotemporal analysis and failing to quantify the impacts of complex factors such as vegetation structure. This study integrates passive and active satellite remote sensing sensors with aerodynamic models to analyze the spatiotemporal distribution of vegetation's contribution to CO reduction across China from 2013 to 2022. Utilizing data from MODIS, Landsat, and the Gaofen series, we extend traditional site-scale research to a continuous spatial scale, enhancing model accuracy through high-resolution satellite data. Our findings indicate that vegetation in regions east of the Hu-line primarily contributes to CO dry deposition, with cumulative deposition of 5.2854 million tons, improving air quality by 0.00216% and yielding economic benefits of 7.436 billion USD. Forest-type vegetation contributes nearly ten times more to CO dry deposition than non-forest types, with significant spatiotemporal differences. Evergreen broadleaf trees contribute the most, with a cumulative reduction of 2.7826 million tons. Wavelet transform coherence analysis identifies the leaf area index (LAI) as the parameter with the highest coherence with CO dry deposition across all time-frequency scales, averaging a wavelet coherence of 0.79. The SHAP analysis indicates that temperature is the main factor influencing temporal fluctuations. These results provide a deeper understanding of vegetation's role in the global carbon cycle, offering significant implications for carbon reduction policies, vegetation management, and ecosystem service enhancement in China and globally.