cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17143407
title: Dataset for: Peptide hydrophobicity and aromaticity predict multi-state translocation kinetics via protective antigen nanopores

description: Single-molecule analysis of guest-host peptide translocations via anthrax toxin protective antigen (PA) nanopores reveals a multi-state kinetic mechanism. K-Means clustering identified four distinct conductance states for all peptides tested, including a fully blocked state (State 0), two intermediates (States 1 and 2), and a fully open pore (State 3). Multi-exponential kinetic analysis of state-to-state transitions was performed, and the resulting lifetimes and amplitudes were correlated with molecular properties of the guest residue. These correlations revealed which physical properties govern the overall mechanism. The fully blocked State 0 acts as a 'hydrophobic trap,' with the lifetime of entry transitions (e.g., 1→0) strongly predicted by side-chain hydrophobicity. Conversely, escaping this trap is a steric process governed by molecular size, though the probability of a fast escape is uniquely facilitated by aromaticity, suggesting a specific ungating interaction with the pore's ϕ clamp, which is consistent with clamp site dilation. Rearrangements between partially blocked states are also dominated by hydrophobicity, reflecting solvation/desolvation of guest residues and clamp site during conformational rearrangements. Final dissociation to open nanopore is a multi-pathway process where the dominant physical force depends on the starting state: escape from deeper states is an energetic battle against hydrophobicity and aromaticity, while escape from shallower states presents a final steric hurdle. Overall, this work dissects the peptide translocation process, demonstrating how distinct physical forces—hydrophobicity, sterics, and aromaticity—govern specific, sequential steps of intra-pore dynamics and release, providing a detailed energy landscape for peptide-nanopore interactions.
DOI: 10.5281/zenodo.17208228
title: Dataset for: Peptide hydrophobicity and aromaticity predict multi-state translocation kinetics via protective antigen nanopores

description: Single-molecule analysis of guest-host peptide translocations via anthrax toxin protective antigen (PA) nanopores reveals a multi-state kinetic mechanism. K-Means clustering identified four distinct conductance states for all peptides tested, including a fully blocked state (State 0), two intermediates (States 1 and 2), and a fully open pore (State 3). Multi-exponential kinetic analysis of state-to-state transitions was performed, and the resulting lifetimes and amplitudes were correlated with molecular properties of the guest residue. These correlations revealed which physical properties govern the overall mechanism. The fully blocked State 0 acts as a 'hydrophobic trap,' with the lifetime of entry transitions (e.g., 1→0) strongly predicted by side-chain hydrophobicity. Conversely, escaping this trap is a steric process governed by molecular size, though the probability of a fast escape is uniquely facilitated by aromaticity, suggesting a specific ungating interaction with the pore's ϕ clamp, which is consistent with clamp site dilation. Rearrangements between partially blocked states are also dominated by hydrophobicity, reflecting solvation/desolvation of guest residues and clamp site during conformational rearrangements. Final dissociation to open nanopore is a multi-pathway process where the dominant physical force depends on the starting state: escape from deeper states is an energetic battle against hydrophobicity and aromaticity, while escape from shallower states presents a final steric hurdle. Overall, this work dissects the peptide translocation process, demonstrating how distinct physical forces—hydrophobicity, sterics, and aromaticity—govern specific, sequential steps of intra-pore dynamics and release, providing a detailed energy landscape for peptide-nanopore interactions.
DOI: 10.34810/data2180
title: Replication data from the Spanish adaptation and validation of the Hospitalized Patient Dignity Scale (IPDS) in hospitalized patients: a psychometric study.

description: The dataset contains the data described in the article "Spanish adaptation and validation of the Hospitalized Patient Dignity Scale (IPDS) in hospitalized patients: a psychometric study."
This dataset includes a total of 553 participants from four hospitals located in the province of Barcelona. The questionnaires were completed during the users' hospitalization. The dataset contains the responses to each item of the questionnaire related to users' expectations and satisfaction regarding the perception of dignity in care. Additionally, it includes some sociodemographic variables to contextualize the study sample.
DOI: 10.5281/zenodo.17208258
title: Examining the impact of beech deadwood on soil properties
DOI: 10.5281/zenodo.17208259
title: Examining the impact of beech deadwood on soil properties
DOI: 10.15468/dl.xpfmd8
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tradescantia fluminensis",
 "Country is Paraguay",
 "HasCoordinate is true"
 ]
}

 The dataset includes 76 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019278-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wrnnrh
title: Occurrence Download

description: A dataset containing 1129 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trithemis festiva",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1129 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019276-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gnnfjn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tradescantia fluminensis",
 "Country is Bosnia and Herzegovina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019277-250920141307145/datasets/export for details.
DOI: 10.15468/dl.pvbqf9
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tradescantia fluminensis",
 "Country is Peru",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019279-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9nvv88
title: Occurrence Download

description: A dataset containing 8848 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "CoordinateUncertaintyInMeters is less than or equal to 9959.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Triatoma",
 "Year 1990-2025"
 ]
}

 The dataset includes 8848 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019280-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3d4qbe
title: Occurrence Download

description: A dataset containing 570928 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Cistus ladanifer)"
 ]
}

 The dataset includes 570928 records from 138 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019259-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bmejw9
title: Occurrence Download

description: A dataset containing 51031 records in GBIF matching the query:
SELECT "year", GBIF_EQDGCode(2, decimalLatitude, decimalLongitude, COALESCE(coordinateUncertaintyInMeters, 1000)) AS qdgcCode,speciesKey,species, family,COUNT(*) AS n,MIN(COALESCE(coordinateUncertaintyInMeters, 1000)) AS minCoordinateUncertaintyInMeters, IF(ISNULL(family), NULL, SUM(COUNT(*)) OVER (PARTITION BY family)) AS familyCount FROM occurrence WHERE class = 'Aves' AND occurrenceStatus = 'PRESENT'AND (coordinateUncertaintyInMeters &lt;= 1000) AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID') AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH') AND level1Gid = 'ZAF.9_1' AND speciesKey IS NOT NULL AND decimalLatitude IS NOT NULL AND decimalLongitude IS NOT NULL AND collectionCode != 'SABAP2' GROUP BY "year", qdgcCode, speciesKey, family, species ORDER BY "year" ASC, qdgcCode ASC, speciesKey ASC

 The dataset's 51031 records were derived from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019264-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17208275
title: Perceived Influencing Factors and Cross-Cultural Adaptation of Expatriate Chinese Language Educators in the UAE
DOI: 10.5281/zenodo.17208276
title: Perceived Influencing Factors and Cross-Cultural Adaptation of Expatriate Chinese Language Educators in the UAE
DOI: 10.15468/dl.khg99p
title: Occurrence Download

description: A dataset containing 1200071 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Fauna Atlas N.T."
 ]
}

 The dataset includes 1200071 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019270-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4228/zalf-z2aq-v484
title: Impact of different soil erosion levels on gross N transformation processes and gaseous N losses: An incubation study

description: Soil erosion is a key driver of soil redistribution, often causing nutrient losses from agricultural fields and contributing to nutrient overload in natural ecosystems. The removal of topsoil leads to truncated soil profiles on shoulder slopes, in which the plough can incorporate deeper soil material. This can change soil properties and, thus, alter biogeochemical cycling. We designed a short-term mesocosm experiment to quantify most of the N transformation processes in topsoils of three erosion levels by combining different 15N-tracing techniques. The dataset contains CO₂, N₂O and N₂ fluxes measured under controlled conditions, as well as Ntrace model input data and data on plant fertiliser N uptake. This table contains the index of all tables forming this data collection.

Related datasets are listed in the metadata element 'Related Identifier'.
Dataset version 1.0
DOI: 10.15468/dl.hfy3a4
title: Occurrence Download

description: A dataset containing 204 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Urothemis signata",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 204 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019281-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ekeqkc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tradescantia fluminensis",
 "Country is Romania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019282-250920141307145/datasets/export for details.
DOI: 10.15468/dl.99mhs2
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tradescantia fluminensis",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019283-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30218230
title: <b>Antimicrobial susceptibility of </b><b><i>Escherichia coli </i></b><b>and </b><b><i>Vibrio</i></b><b> spp. isolated from Oysters (</b><b><i>Crassostrea</i></b><b> sp.) and surface water contamination in the estuarine environment of the Acaraí River mouth</b>

description: The deposited data comprise the isolation and identification of <i>Escherichia coli</i> and <i>Vibrio</i> spp., carried out following methodologies recommended by the American Public Health Association (APHA). Additionally, physicochemical parameters of surface water (pH, turbidity, dissolved oxygen, salinity, and temperature) were measured to evaluate their relationship with microbial growth.
DOI: 10.6084/m9.figshare.30218230.v1
title: <b>Antimicrobial susceptibility of </b><b><i>Escherichia coli </i></b><b>and </b><b><i>Vibrio</i></b><b> spp. isolated from Oysters (</b><b><i>Crassostrea</i></b><b> sp.) and surface water contamination in the estuarine environment of the Acaraí River mouth</b>

description: The deposited data comprise the isolation and identification of <i>Escherichia coli</i> and <i>Vibrio</i> spp., carried out following methodologies recommended by the American Public Health Association (APHA). Additionally, physicochemical parameters of surface water (pH, turbidity, dissolved oxygen, salinity, and temperature) were measured to evaluate their relationship with microbial growth.
DOI: 10.15468/dl.gnbw2b
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Cistus laxus)"
 ]
}

 The dataset includes 43 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019284-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vqf8b6
title: Occurrence Download

description: A dataset containing 260 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Miljodir_naturtypekartlegging_2017"
 ]
}

 The dataset includes 260 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019285-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30216181
title: <b>Climate-Driven Expansion and Co-occurrence Hotspots of Forest Insect Pests Revealed by Stacked Species Distribution Models</b>

description: This dataset supports a study examining the potential impacts of climate change on the distribution of 24 major forest insect pests in the Northern Hemisphere. Using an ensemble modelling framework and historical as well as future climate projections from CMIP6 scenarios, we generated species-specific occurrence probabilities and identified co-occurrence hotspots by stacking all species’ predictions. The data include latitude and longitude coordinates for each species, representing their known distributions. These records serve as the basis for modeling studies on pest distribution and co-occurrence patterns under current and future climate conditions.
DOI: 10.6084/m9.figshare.30216181.v1
title: <b>Climate-Driven Expansion and Co-occurrence Hotspots of Forest Insect Pests Revealed by Stacked Species Distribution Models</b>

description: This dataset supports a study examining the potential impacts of climate change on the distribution of 24 major forest insect pests in the Northern Hemisphere. Using an ensemble modelling framework and historical as well as future climate projections from CMIP6 scenarios, we generated species-specific occurrence probabilities and identified co-occurrence hotspots by stacking all species’ predictions. The data include latitude and longitude coordinates for each species, representing their known distributions. These records serve as the basis for modeling studies on pest distribution and co-occurrence patterns under current and future climate conditions.
DOI: 10.15468/dl.4459dz
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((33.39025 -30.52773,58.70641 -34.36351,69.27612 2.45999,44.0452 -1.97247,41.14705 -17.48607,33.39025 -30.52773))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Theraphosidae"
 ]
}

 The dataset includes 41 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019286-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30218263
title: <b>A generalized resource-constrained framework for quantifying coupled ecosystem water and carbon fluxes</b>:<b>data source</b>

description: In this dataset, runoff data from 1927 catchments were obtained from the Global Runoff Data Center (GRDC, http://www.bafg.de/GRDC/EN/Home/homepage_node) and the Catchment Attributes and Meteorology for Large-sample Studies (CAMELS) datasets (Chagas et al., 2020; Coxon et al., 2020; Fowler et al., 2021). CAMELS data sets have precipitation (<i>P</i>) data. In contrast, the GRDC data set does not have <i>P</i> data, which were obtained from the ERA5_land reanalysis dataset (https://cds.climate.copernicus.eu/datasets/reanalysis-era5-land). These catchments have at least 10-year consecutive runoff records without missing a value from 1971 to 2020. The long-term mean evapotranspiration (ET) of each catchment was derived from long-term water balance equation (ET = P - R). To validate the robustness of establish framework, independent observed GPP and ET data from 107 flux stations with records longer than 5 years were also obtained. The complied catchment and flux datasets spanned 46°S to 72°N in latitude, 156°W to 175°E in longitude that represented a wide geographic and climatic distribution.
DOI: 10.6084/m9.figshare.30218263.v1
title: <b>A generalized resource-constrained framework for quantifying coupled ecosystem water and carbon fluxes</b>:<b>data source</b>

description: In this dataset, runoff data from 1927 catchments were obtained from the Global Runoff Data Center (GRDC, http://www.bafg.de/GRDC/EN/Home/homepage_node) and the Catchment Attributes and Meteorology for Large-sample Studies (CAMELS) datasets (Chagas et al., 2020; Coxon et al., 2020; Fowler et al., 2021). CAMELS data sets have precipitation (<i>P</i>) data. In contrast, the GRDC data set does not have <i>P</i> data, which were obtained from the ERA5_land reanalysis dataset (https://cds.climate.copernicus.eu/datasets/reanalysis-era5-land). These catchments have at least 10-year consecutive runoff records without missing a value from 1971 to 2020. The long-term mean evapotranspiration (ET) of each catchment was derived from long-term water balance equation (ET = P - R). To validate the robustness of establish framework, independent observed GPP and ET data from 107 flux stations with records longer than 5 years were also obtained. The complied catchment and flux datasets spanned 46°S to 72°N in latitude, 156°W to 175°E in longitude that represented a wide geographic and climatic distribution.
DOI: 10.15468/dl.xwj3nz
title: Occurrence Download

description: A dataset containing 13691264 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-180 -58,180 -58,180 84,-180 84,-180 -58))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC-BY 4.0, CC-BY-NC 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "Year is 2003"
 ]
}

 The dataset includes 13691264 records from 2270 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019191-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ics1q
title: Occurrence Download

description: A dataset containing 1873 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Norway",
 "TaxonKey is Larix decidua Mill."
 ]
}

 The dataset includes 1873 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007291-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qjbvqt
title: Occurrence Download

description: A dataset containing 218 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Argentina",
 "Country is Brazil"
 ]
 },
 "Year 1998-2019",
 "HasCoordinate is true",
 "TaxonKey is Cuniculus paca (Linnaeus, 1766)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 218 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004443-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s4uvfm
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Goniothalamus acehensis R.M.K.Saunders"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031332-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lbtony
title: Occurrence Download

description: A dataset containing 1368 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Abundance of megabenthic species in trawl catches per station in addition to table 2 during POLARSTERN cruise ARK-VIII/2 (EPOS)"
 ]
}

 The dataset includes 1368 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007291-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.l05vux
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Haplopappus meyenii Walp."
 ]
}

 The dataset includes 7 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004443-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.