cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18078985
title: Land use and space are the main drivers of subtropical stream bacterial beta diversity

description: This repository contains datasets and R scripts used to evaluate beta diversity patterns and environmental, land-use, and spatial drivers of bacterioplankton communities from 72 subtropical low-order streams. It includes bacterial community matrices (phylum, genus/species, and ASV level), environmental and watershed land-cover data, and geolocation information. The scripts perform beta diversity partitioning using presence–absence and abundance frameworks, distance-based redundancy analysis (db-RDA), variance partitioning, and generate all community composition and diversity figures presented in the manuscript. All analyses are fully reproducible.
DOI: 10.5281/zenodo.18078986
title: Land use and space are the main drivers of subtropical stream bacterial beta diversity

description: This repository contains datasets and R scripts used to evaluate beta diversity patterns and environmental, land-use, and spatial drivers of bacterioplankton communities from 72 subtropical low-order streams. It includes bacterial community matrices (phylum, genus/species, and ASV level), environmental and watershed land-cover data, and geolocation information. The scripts perform beta diversity partitioning using presence–absence and abundance frameworks, distance-based redundancy analysis (db-RDA), variance partitioning, and generate all community composition and diversity figures presented in the manuscript. All analyses are fully reproducible.
DOI: 10.15468/dl.9bmnb7
title: Occurrence Download

description: A dataset containing 16054 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendrexetastes",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 16054 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067998-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2nbz8z
title: Occurrence Download

description: A dataset containing 223 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thorius magnipes"
 ]
}

 The dataset includes 223 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067999-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kvwmrg
title: Occurrence Download

description: A dataset containing 382 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendrocolaptes hoffmannsi",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 382 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068000-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gn34th
title: Occurrence Download

description: A dataset containing 349178 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is AMNH Herpetology Collections"
 ]
}

 The dataset includes 349178 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067996-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48366/r1568474
title: LiSSA: Toward Generic Traceability Link Recovery through Retrieval-Augmented Generation

description: LiSSA (Linking Software System Artifacts) is an LLM-based approach that aims to be generic across artifact types. The key idea is to use a Large Language Model (LLM) together with information retrieval (IR) to find trace links. For a given source artifact (e.g. a requirement or a sentence in documentation), LiSSA first uses IR techniques to retrieve a small set of potentially relevant target artifacts (code files, model elements, etc.). It then queries the LLM with the retrieved context to generate or suggest the most likely trace link.
DOI: 10.15468/dl.ukjasx
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thorius maxillabrochus"
 ]
}

 The dataset includes 42 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068004-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dgmdy4
title: Occurrence Download

description: A dataset containing 314668 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thalassarche melanophris",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-180 -90, 180 -90, 180 90, -180 90, -180 -90))"
 ]
}

 The dataset includes 314668 records from 154 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067992-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xfc2fv
title: Occurrence Download

description: A dataset containing 219 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thorius minutissimus"
 ]
}

 The dataset includes 219 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068005-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18064595
title: Rise and fall of Osmundaceae: phylogenetic and biogeographic analyses reveal a decline of leptopteroid taxa amid global climatic changes

description: R script to replicate analyses in Urrea et al. (2026). It includes code for:



Computing Disparity through time, using dispRity (Guillerme, 2018) and Claddis (Lloyd, 2016) - Step 8

Estimating natural selection modes and strength (EvoPhylo, Simões et al., 2023), and processing and plotting output from MrBayes (ggtree, YU et al., 2017) - Steps 10-11
DOI: 10.5281/zenodo.18064594
title: Rise and fall of Osmundaceae: phylogenetic and biogeographic analyses reveal a decline of leptopteroid taxa amid global climatic changes

description: R script to replicate analyses in Urrea et al. (2026). It includes code for:



Computing Disparity through time, using dispRity (Guillerme, 2018) and Claddis (Lloyd, 2016) - Step 8

Estimating natural selection modes and strength (EvoPhylo, Simões et al., 2023), and processing and plotting output from MrBayes (ggtree, YU et al., 2017) - Steps 10-11
DOI: 10.15468/dl.4m6k8x
title: Occurrence Download

description: A dataset containing 1110564 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Belgium, Germany, Netherlands)",
 "TaxonKey is one of (Ondatra zibethicus, Myocastor coypus)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1110564 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068001-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18078206
title: Raw and Analyzed data for paper: Aerosolisation of microalgae: Unveiling dimethyl-sulfide emissions during bubbling (Rosati et al.)
DOI: 10.5281/zenodo.18078207
title: Raw and Analyzed data for paper: Aerosolisation of microalgae: Unveiling dimethyl-sulfide emissions during bubbling (Rosati et al.)
DOI: 10.15468/dl.nzwv4t
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thorius minydemus"
 ]
}

 The dataset includes 20 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068007-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18014040
title: Python code and example data to resolve the contributions of photosystem II, photosystem I, and phycobilisomes to the in vivo fluorescence yield

description: The workflow to resolve the contributions of photosystem II, photosystem I, and phycobilisomes to the in vivo fluorescence yield is performed by running the Python code in the following order (with explanations):

Step_1_NMF_and_LS_PSIPBSvarFixed.py – Constrained NMF of fluorescence induction curves, followed by least squares (LS) fitting of variable fluorescence data with fixed Fv/Fm and ΔF/F'm values for PSI and PBS.

(Alternatively, Suppl_Step_1_NMF_and_LS_PSIPBSvarExcluded.py [LS excluding Fv/Fm and ΔF/F'm values for PSI and PBS] or Suppl_Step_1_NMF_and_LS_PSIPBSvarVariable.py [LS with fixed Fv/Fm and variable ΔF/F'm values for PSI and PBS] can be used.)

Step_2_Clustering_kinetics.py – Clustering of the extracted features from the resolved kinetics of ΦPSII, and relative fluorescence yields of PSII, PSI, and PBS.

(The following steps are presented without a prescribed order.)

Step_3_Grouped_scatter_interactive_plot_ratios.py – Scatter plots of the relative fluorescence amplitudes of PSII, PSI, and PBS across detection wavebands, obtained from the clustering results.

Step_3_Redrawn_OJIP_from_target_column.py – Redrawing the resolved fluorescence induction curves of PSII, PSI, and PBS per cluster (or supercluster) obtained from the clustering results.

Step_3_Redrawn_kinetics_from_target_column.py – Redrawing the resolved kinetics of ΦPSII, and relative fluorescence yields of PSII, PSI, and PBS per cluster (or supercluster) obtained from the clustering results.

Example data that can be used for executing the above code are described as follows:





NMF_background_435ex.csv – Background signal profile during the fluorescence induction curve under blue excitation.




NMF_background_590ex.csv – Background signal profile during the fluorescence induction curve under amber excitation.




0702_Cm10DBlue.csv – Fluorescence induction curves recorded under blue excitation.




0702_Cm10DAmber.csv – Fluorescence induction curves recorded under amber excitation.




dFFmNPQ_1.csv – ΔF/F'm (Fv/Fm) and NPQ kinetics data under a series of saturating light pulses using blue measuring light.




dFFmNPQ_2.csv – ΔF/F'm (Fv/Fm) and NPQ kinetics data under a series of saturating light pulses using amber measuring light.




dFFmNPQ_3.csv – ΔF/F'm (Fv/Fm) and NPQ kinetics data under blue illumination followed by darkness using blue measuring light.




dFFmNPQ_4.csv – ΔF/F'm (Fv/Fm) and NPQ kinetics data under blue illumination followed by darkness using amber measuring light.




dFFmNPQ_5.csv – ΔF/F'm (Fv/Fm) and NPQ kinetics data under red illumination followed by darkness using blue measuring light.




dFFmNPQ_6.csv – ΔF/F'm (Fv/Fm) and NPQ kinetics data under red illumination followed by darkness using amber measuring light.
DOI: 10.5281/zenodo.18014041
title: Python code and example data to resolve the contributions of photosystem II, photosystem I, and phycobilisomes to the in vivo fluorescence yield

description: The workflow to resolve the contributions of photosystem II, photosystem I, and phycobilisomes to the in vivo fluorescence yield is performed by running the Python code in the following order (with explanations):

Step_1_NMF_and_LS_PSIPBSvarFixed.py – Constrained NMF of fluorescence induction curves, followed by least squares (LS) fitting of variable fluorescence data with fixed Fv/Fm and ΔF/F'm values for PSI and PBS.

(Alternatively, Suppl_Step_1_NMF_and_LS_PSIPBSvarExcluded.py [LS excluding Fv/Fm and ΔF/F'm values for PSI and PBS] or Suppl_Step_1_NMF_and_LS_PSIPBSvarVariable.py [LS with fixed Fv/Fm and variable ΔF/F'm values for PSI and PBS] can be used.)

Step_2_Clustering_kinetics.py – Clustering of the extracted features from the resolved kinetics of ΦPSII, and relative fluorescence yields of PSII, PSI, and PBS.

(The following steps are presented without a prescribed order.)

Step_3_Grouped_scatter_interactive_plot_ratios.py – Scatter plots of the relative fluorescence amplitudes of PSII, PSI, and PBS across detection wavebands, obtained from the clustering results.

Step_3_Redrawn_OJIP_from_target_column.py – Redrawing the resolved fluorescence induction curves of PSII, PSI, and PBS per cluster (or supercluster) obtained from the clustering results.

Step_3_Redrawn_kinetics_from_target_column.py – Redrawing the resolved kinetics of ΦPSII, and relative fluorescence yields of PSII, PSI, and PBS per cluster (or supercluster) obtained from the clustering results.

Example data that can be used for executing the above code are described as follows:





NMF_background_435ex.csv – Background signal profile during the fluorescence induction curve under blue excitation.




NMF_background_590ex.csv – Background signal profile during the fluorescence induction curve under amber excitation.




0702_Cm10DBlue.csv – Fluorescence induction curves recorded under blue excitation.




0702_Cm10DAmber.csv – Fluorescence induction curves recorded under amber excitation.




dFFmNPQ_1.csv – ΔF/F'm (Fv/Fm) and NPQ kinetics data under a series of saturating light pulses using blue measuring light.




dFFmNPQ_2.csv – ΔF/F'm (Fv/Fm) and NPQ kinetics data under a series of saturating light pulses using amber measuring light.




dFFmNPQ_3.csv – ΔF/F'm (Fv/Fm) and NPQ kinetics data under blue illumination followed by darkness using blue measuring light.




dFFmNPQ_4.csv – ΔF/F'm (Fv/Fm) and NPQ kinetics data under blue illumination followed by darkness using amber measuring light.




dFFmNPQ_5.csv – ΔF/F'm (Fv/Fm) and NPQ kinetics data under red illumination followed by darkness using blue measuring light.




dFFmNPQ_6.csv – ΔF/F'm (Fv/Fm) and NPQ kinetics data under red illumination followed by darkness using amber measuring light.
DOI: 10.15468/dl.apst22
title: Occurrence Download

description: A dataset containing 307 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thorius munificus"
 ]
}

 The dataset includes 307 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068008-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18079254
title: Efficient flip-chip and on-chip-based modulation of flux-tunable superconducting resonators

description: Data used for figures in "Efficient flip-chip and on-chip-based modulation of flux-tunable superconducting resonators" by Achintya Paradkar et al.
description: This work was supported in part by the Horizon Europe 2021-2027 framework program of the European Union under Grant Agreement No. 101080143 (SuperMeQ), the European Research Council under Grant No. 101087847 (ERC Consolidator SuperQLev), the Knut and Alice Wallenberg (KAW) Foundation through a Wallenberg Academy Fellowship and Scholar (WW), and the Wallenberg Center for Quantum Technology (WACQT). Samples were fabricated at the Chalmers Myfab Nanofabrication Laboratory.
DOI: 10.5281/zenodo.18079253
title: Efficient flip-chip and on-chip-based modulation of flux-tunable superconducting resonators

description: Data used for figures in "Efficient flip-chip and on-chip-based modulation of flux-tunable superconducting resonators" by Achintya Paradkar et al.
description: This work was supported in part by the Horizon Europe 2021-2027 framework program of the European Union under Grant Agreement No. 101080143 (SuperMeQ), the European Research Council under Grant No. 101087847 (ERC Consolidator SuperQLev), the Knut and Alice Wallenberg (KAW) Foundation through a Wallenberg Academy Fellowship and Scholar (WW), and the Wallenberg Center for Quantum Technology (WACQT). Samples were fabricated at the Chalmers Myfab Nanofabrication Laboratory.
DOI: 10.15468/dl.3wzjbz
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thorius narismagnus"
 ]
}

 The dataset includes 83 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068009-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4tse4a
title: Occurrence Download

description: A dataset containing 110879 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendrocolaptes",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 110879 records from 189 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068003-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cag2pf
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendrocolaptes retentus",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068010-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.csgayt
title: Occurrence Download

description: A dataset containing 413 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thorius omiltemi"
 ]
}

 The dataset includes 413 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068012-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dt6cc6
title: Occurrence Download

description: A dataset containing 248556 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thalasseus elegans",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-180 -90, 180 -90, 180 90, -180 90, -180 -90))"
 ]
}

 The dataset includes 248556 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068006-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5ahza2
title: Occurrence Download

description: A dataset containing 369221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "TaxonKey is one of (Aponogeton distachyos, Arthurdendyus triangulatus, Cabomba caroliniana, Callosciurus finlaysonii, Cherax destructor, Corvus splendens, Crassula helmsii, Elodea densa, Eriocheir sinensis, Erythranthe guttata, Faxonius immunis, Faxonius juvenilis, Faxonius rusticus, Faxonius virilis, Gambusia affinis, Heracleum mantegazzianum, Heracleum persicum, Heracleum pubescens, Houttuynia cordata, , Impatiens glandulifera, Koenigia polystachya, Lagarosiphon major, Lepomis gibbosus, Limnoperna fortunei, Ludwigia grandiflora, Ludwigia peploides, Lysichiton americanus, Morone americana, Muntiacus reevesi, Myriophyllum aquaticum, Myriophyllum heterophyllum, Pacifastacus leniusculus, Petasites japonicus, Pontederia cordata, Procambarus acutus, Procambarus clarkii, Procambarus virginalis, Pseudorasbora parva, Pycnonotus cafer, Saururus cernuus, Sciurus carolinensis, Sciurus niger, Solenopsis invicta, Solenopsis richteri, Threskiornis aethiopicus, Vespa velutina, Zizania latifolia)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 369221 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068002-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yg2mng
title: Occurrence Download

description: A dataset containing 194 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thorius papaloae"
 ]
}

 The dataset includes 194 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068013-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e241883
title: Data for "Proving their Loyalty: A Research Note on the Effects of Serving in World War II on Immigrant Outcomes"

description: Replication files for "Proving their Loyalty: A Research Note on the Effects of Serving in World War II on Immigrant Outcomes", accepted at Demography. Note that not all datasets used in the analysis were shareable due to data use agreements and lack of authorization to redistribute. All datasets used, however, are obtainable by researchers for no cost at the time of writing and instructions are provided on where these data are obtained in the readme file.<br>
DOI: 10.3886/e241883v1
title: Data for "Proving their Loyalty: A Research Note on the Effects of Serving in World War II on Immigrant Outcomes"

description: Replication files for "Proving their Loyalty: A Research Note on the Effects of Serving in World War II on Immigrant Outcomes", accepted at Demography. Note that not all datasets used in the analysis were shareable due to data use agreements and lack of authorization to redistribute. All datasets used, however, are obtainable by researchers for no cost at the time of writing and instructions are provided on where these data are obtained in the readme file.<br>
DOI: 10.15468/dl.wz8ug5
title: Occurrence Download

description: A dataset containing 2061 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thorius pennatulus"
 ]
}

 The dataset includes 2061 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068015-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cndcfm
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thorius pinicola"
 ]
}

 The dataset includes 53 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068016-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dxb37a
title: Occurrence Download

description: A dataset containing 3373 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Benin, Burkina Faso, Ghana, Côte d’Ivoire, Guinea, Nigeria, Mali)",
 "TaxonKey is Tomentella"
 ]
}

 The dataset includes 3373 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068017-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14325671
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.3a839h
title: Occurrence Download

description: A dataset containing 341 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thorius pulmonaris"
 ]
}

 The dataset includes 341 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068018-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.