cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/63b-ng3-ymw
title: Carex loliacea L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/9sr-914-4ck
title: Filipendula vulgaris Moench

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/jfq-5q5-282
title: Persicaria minor (Huds.) Opiz

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/tha-9bb-etv
title: Juncus articulatus L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vc1-t2h-vmj
title: Berteroa incana (L.) DC.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vq9-vfd-mq0
title: Carex cespitosa L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/52m-6by-l7k
title: Cannabis sativa L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/d0n-ckh-m44
title: Eleocharis palustris (L.) Roem. & Schult.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/e1p-c9g-413
title: Potamogeton natans L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/ts5-vgh-21v
title: Rumex acetosa L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v4a-40y-dqy
title: Potentilla recta L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/xjt-411-mhd
title: Carex panicea L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15468/dl.6xgbcf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Bolborhynchus lineola",
 "Year is greater than or equal to 1990",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009572-251120083545085/datasets/export for details.
DOI: 10.3535/0bh-xdn-q2q
title: Camelina Crantz

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/sr1-b77-y93
title: Carex parallela (Laest.) Sommerf.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/t61-r08-69s
title: Juncus alpinoarticulatus subsp. alpestris (Hartm.) Hämet-Ahti

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/ykl-w9h-rjw
title: Ranunculus baudotii Godr.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/1mz-7zx-msw
title: Cakile maritima Scop.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/5jh-dcx-hgp
title: Elymus caninus (L.) L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/5mf-g70-28p
title: Vicia sepium L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/n0e-jar-vts
title: Viscaria alpina (L.) G. Don

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/n10-q29-nv4
title: Geranium robertianum L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/nfe-3aw-1v1
title: Ranunculus baudotii Godr.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/45z-1nh-nvt
title: Anthoxanthum nitens (Weber) Y.Schouten & Veldkamp

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/77f-06a-v9z
title: Silene vulgaris subsp. vulgaris

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/8w5-rff-41v
title: Juncus L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/912-znx-8wv
title: Carex lasiocarpa Ehrh.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/ln0-2rv-02x
title: Geranium robertianum L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vxv-l1q-pt3
title: Carex panicea L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/00c-spq-fvy
title: Vicia tetrasperma (L.) Schreb.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/1eq-m5p-42h
title: Bistorta officinalis Raf.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/jrd-ztl-czc
title: Vicia tetrasperma (L.) Schreb.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vp5-qc3-gar
title: Carex rhynchophysa Fisch., C.A.Mey. & Avé-Lall.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/wv2-2ks-t8z
title: Eleocharis palustris (L.) Roem. & Schult.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/2fb-92v-bm8
title: Vicia tetrasperma (L.) Schreb.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/5t8-6ys-xdx
title: Polygonum L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/cnv-s2y-s57
title: Carex rhynchophysa Fisch., C.A.Mey. & Avé-Lall.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/k0s-zwq-84y
title: Carex rhynchophysa Fisch., C.A.Mey. & Avé-Lall.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/x18-txw-5yt
title: Geranium robertianum L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/x1g-4dx-jwe
title: Cakile maritima Scop.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/xpv-wzn-cet
title: Dactylorhiza viridis (L.) R.M.Bateman, Pridgeon & M.W.Chase

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/5r7-h9l-rw8
title: Carex L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/hvk-h2t-z6p
title: Stellaria aquatica (L.) Scop.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/nb9-xd4-7hr
title: Sparganium angustifolium Michx.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/q10-6hb-sbn
title: Ranunculus baudotii Godr.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/wz7-1ah-tpj
title: Phegopteris connectilis (Michx.) Watt

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15468/dl.4q7kfd
title: Occurrence Download

description: A dataset containing 2692 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pinna nobilis",
 "Year 2010-2020"
 ]
}

 The dataset includes 2692 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009573-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/90k-eaw-es9
title: Ruppia maritima L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/aey-dkx-c35
title: Trichophorum cespitosum subsp. cespitosum

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/ewn-dx1-25n
title: Plantae

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/jbe-s0c-jy1
title: Luzula luzuloides (Lam.) Dandy & Wilmott

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/q1m-s1f-j2n
title: Alchemilla subcrenata Buser

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v4q-cqd-1z3
title: Luzula luzuloides (Lam.) Dandy & Wilmott

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vwz-zx9-ghm
title: Carex cespitosa L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/wfc-1m8-40v
title: Vicia tetrasperma (L.) Schreb.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/2vy-gzq-sn6
title: Carex L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/51m-cmq-bv8
title: Alchemilla subcrenata Buser

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/dcz-032-w1y
title: Carex canescens L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/gwm-8hq-xlr
title: Achnatherum calamagrostis (L.) P.Beauv.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/j3w-gk8-1d2
title: Cannabis sativa L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/5ga-pcn-tsl
title: Nuphar lutea (L.) Sm.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15468/dl.7fdzdk
title: Occurrence Download

description: A dataset containing 53333 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "OccurrenceStatus is Present",
 "TaxonKey is Pinus ponderosa Douglas ex C.Lawson"
 ]
}

 The dataset includes 53333 records from 231 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009601-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mxuvjc
title: Occurrence Download

description: A dataset containing 269 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Biodiversité des vers de terre (Annelida, Clitellata) des milieux cultivés des Antilles françaises"
 ]
}

 The dataset includes 269 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009614-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.396q38
title: Occurrence Download

description: A dataset containing 309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Tanzania, United Republic of",
 "OccurrenceStatus is Present",
 "TaxonKey is Dalbergia melanoxylon Guill. & Perr."
 ]
}

 The dataset includes 309 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009613-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xtgb2y
title: Occurrence Download

description: A dataset containing 29922 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Nicaragua",
 "GadmGid is NIC.6_1"
 ]
}

 The dataset includes 29922 records from 129 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016010-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kgm982
title: Occurrence Download

description: A dataset containing 26685 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Micrococcales"
 ]
}

 The dataset includes 26685 records from 501 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016011-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15488023
title: INFINITE-Database-Signal Features_Composites Manufacturing_2nd version of the Portable Reader

description: During Infinite project, several signals were collected during the course of composite component manufacturing, using the 2nd version of the Portable Reader created in the project. The components id, the production dates, RCs , life event /manufacturing stages and correrponsing timestamped  signal features are organised on this database
DOI: 10.5281/zenodo.15488024
title: INFINITE-Database-Signal Features_Composites Manufacturing_2nd version of the Portable Reader

description: During Infinite project, several signals were collected during the course of composite component manufacturing, using the 2nd version of the Portable Reader created in the project. The components id, the production dates, RCs , life event /manufacturing stages and correrponsing timestamped  signal features are organised on this database
DOI: 10.15468/dl.m7qb8q
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Korthalsia junghuhnii"
 ]
}

 The dataset includes 27 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005251-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17697443
title: World Quantum Theory: A Unified Framework for Quantum and Classical Physics Based on Frequency

description: Physics is founded upon a set of quantities and laws presumed to be universal: the speed of light c, Planck’s constant h, elementary-particle rest masses, special relativity, and the de Broglie relation. Yet the fact that all of these “bedrocks” simultaneously hold to the highest experimental precision precisely on the Earth’s surface remains an unexplained numerical coincidence.This paper demonstrates that, starting from only three minimal axioms I.    The universe is composed of self-sustained, Planck-scale internal-rotation units — termed World Quanta; II.    At every instant, the rotation speed of each unit is exactly c and strictly orthogonally decomposed into tangential and radial components;III.    The total energy is linearly apportioned between the two orthogonal directions in proportion to the corresponding velocity components,special relativity, the de Broglie wavelength, rest mass, Planck’s constant h, and the quantitative form of virtually all classical and quantum laws emerge as inevitable mathematical consequences, without any further assumptions.In this framework, both Planck’s constant h and the electron rest mass mₑ cease to be universal constants and are demoted to local manifestations of the same environmental coupling factor x, whose terrestrial value happens to be xₑ = 2π.The theory’s sole falsifiable prediction is that xₑ will deviate from 2π in different vacuum environments (the South Atlantic Anomaly, tunable Casimir cavities, and the lunar surface). Confirmation would reduce all currently “universal” constants and laws of physics to approximations; disproof would imply that the universe has concealed a deeper structure with pathological precision.The rest is left to experiment.
DOI: 10.5281/zenodo.17629949
title: EEG-Based Dataset Explicitly Targets the Transitions between Sitting and Standing for Exploring Neural Activation Patterns in Motor Imagery and Execution [Preprocessed Dataset]

description: This study presents the first publicly accessible electroencephalography (EEG) dataset explicitly targeting sit-to-stand and stand-to-sit transitions during both motor execution (ME) and motor imagery (MI) tasks. Twenty-two healthy participants performed sitting and standing transitions under well-controlled experimental conditions while 60-channel EEG, electrooculography (EOG), and electromyography (EMG) signals were synchronously recorded. The dataset enables the exploration of neural activation patterns associated with lower-limb movements and supports the development of EEG-based brain–computer interface (BCI) algorithms for mobility assistance and rehabilitation. To validate the dataset, a benchmark classification was conducted using EEGNet, a compact convolutional neural network. Results demonstrated consistent decoding performance with mean accuracies of approximately 80% for ME and 70% for MI, indicating the reliability and usability of the dataset. Additionally, analyses of movement-related cortical potentials (MRCPs) and event-related desynchronization/synchronization (ERD/ERS) patterns revealed distinct neural signatures across the transition phases. This dataset provides a comprehensive foundation for studying lower-limb motor control, neural dynamics, and the advancement of MI-based BCIs for rehabilitation and assistive technologies.

 

The raw and preprocessed data are available via the following URLs in the open-access online repository, Zenodo (https://zenodo.org).





raw data: https://zenodo.org/records/17561969


preprocessed data: https://zenodo.org/records/17629950
DOI: 10.5281/zenodo.17629950
title: EEG-Based Dataset Explicitly Targets the Transitions between Sitting and Standing for Exploring Neural Activation Patterns in Motor Imagery and Execution [Preprocessed Dataset]

description: This study presents the first publicly accessible electroencephalography (EEG) dataset explicitly targeting sit-to-stand and stand-to-sit transitions during both motor execution (ME) and motor imagery (MI) tasks. Twenty-two healthy participants performed sitting and standing transitions under well-controlled experimental conditions while 60-channel EEG, electrooculography (EOG), and electromyography (EMG) signals were synchronously recorded. The dataset enables the exploration of neural activation patterns associated with lower-limb movements and supports the development of EEG-based brain–computer interface (BCI) algorithms for mobility assistance and rehabilitation. To validate the dataset, a benchmark classification was conducted using EEGNet, a compact convolutional neural network. Results demonstrated consistent decoding performance with mean accuracies of approximately 80% for ME and 70% for MI, indicating the reliability and usability of the dataset. Additionally, analyses of movement-related cortical potentials (MRCPs) and event-related desynchronization/synchronization (ERD/ERS) patterns revealed distinct neural signatures across the transition phases. This dataset provides a comprehensive foundation for studying lower-limb motor control, neural dynamics, and the advancement of MI-based BCIs for rehabilitation and assistive technologies.

 

The raw and preprocessed data are available via the following URLs in the open-access online repository, Zenodo (https://zenodo.org).





raw data: https://zenodo.org/records/17561969


preprocessed data: https://zenodo.org/records/17629950
DOI: 10.5281/zenodo.14887337
title: Data and code for "Predicting the functional impact of single nucleotide variants in Drosophila melanogaster with FlyCADD"

description: Purpose

Single nucleotide polymorphisms (SNPs), the most common form of genomic variation, play key roles in micro-evolution and adaptation. In Drosophila melanogaster, many SNPs have been associated to phenotypes through association studies, yet functional validation remains challenging and experimental evidence for functional impact rare.

Here, we present FlyCADD, an impact prediction tool that integrates high-quality D. melanogaster genome annotations into a single score reflecting the predicted impact of a SNP. FlyCADD can be applied to distinguish causal from neutral variants, 1) for variant ranking and prioritization of SNPs for functional studies, 2) to improve genome-editing experimental design or evaluation and 3) to enhance interpretation of naturally occuring SNPs, thereby improving our understanding of genotype-phenotype relationships. 

Dataset content

We provide FlyCADD impact prediction scores readily available, both as precomputed scores for all possible single nucleotide variants on the D. melanogaster reference genome and through a locally executable pipeline for scoring novel variants of interest. If you want the FlyCADD scores to your SNPs of interest, they can often be found in the precomputed FlyCADD score files without the need to run the pipeline. If you have any questions, feel free to contact j.beets@vu.nl.

This repository provides:



        Manual on accessing and using FlyCADD scores (.txt file)

        Precomputed FlyCADD scores for all possible SNPs on the D. melanogaster reference genome Release 6 (.csv files)

        A locally executable FlyCADD pipeline for scoring novel variants, including the trained logistic regression model files, annotation files and scripts (Python)

        166-way multi-species alignment file underlying FlyCADD (.maf file)

        Reconstructed ancestral sequence underlying FlyCADD (.fasta files)

        Derived and simulated variants used for model training and testing FlyCADD (.vcf files)

        FlyCADD scores at all codon positions of unique transcripts in D. melanogaster (.txt files)

        FlyCADD scores for all unique chemically-induced lethal variants in D. melanogaster (Figure 7) (.csv file)


Additional resources

The full pipeline of FlyCADD development is available on GitHub (https://github.com/JuliaBeets/FlyCADD/). For any additional information regarding the collection and generation of data please contact us.