cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3693681
title: LIPID17 POPC-POPG 80:20 MD simulation, Na+ counterions, 298K

description: The last 350ns from a 400ns MD simulation trajectory with Amber lipid 17 force field. POPC-POPG 80:20 (350 POPC, 88 POPG) with Na+ counterions. The starting structure and lipid 17 parameters from here: https://zenodo.org/record/2585523#.Xbf0FC17FBx. The starting structure was generated by removing the appropriate number of POPG lipids to get 80:20 ratio. Dihedral types are corrected to type 9 as discussed here: https://github.com/NMRLipids/NMRlipidsIVPEandPG/issues/12
DOI: 10.7910/dvn/bwy6sk/2oqdil
title: CNAplot_Windows.zip

description: Executables for windows.
DOI: 10.7910/dvn/bwy6sk/civxek
title: XOJO_sourcecode_v11.tar.xz

description: XOJO source code
DOI: 10.5281/zenodo.3695362
title: Optimization of the Mainzelliste Software for Fast Privacy-preserving Record Linkage

description: Synthetically generated person related datasets used in the evaluation of linkage quality and runtime of the Mainzelliste. To generate person records we used the established GeCo data generator modified with small extensions such as including look-up files for German names in addition to English names. A generated dataset consists of two subsets, org and dup, to be compared with each other. The duplicate records can contain data errors (e.g., different<br> but similarly sounding letters, OCR errors or typos) to simulate reduced data quality, making matching more<br> challenging.
DOI: 10.5281/zenodo.3695363
title: Optimization of the Mainzelliste Software for Fast Privacy-preserving Record Linkage

description: Synthetically generated person related datasets used in the evaluation of linkage quality and runtime of the Mainzelliste. To generate person records we used the established GeCo data generator modified with small extensions such as including look-up files for German names in addition to English names. A generated dataset consists of two subsets, org and dup, to be compared with each other. The duplicate records can contain data errors (e.g., different<br> but similarly sounding letters, OCR errors or typos) to simulate reduced data quality, making matching more<br> challenging.
DOI: 10.25345/c5111j
title: MassIVE MSV000085050 - GNPS_MSE_A1_A7_A10-B2_45-55V_40_100_counts
title: This data were collected from waters Xevo G2 XS-Qtof using UPLC during 15 min, 0.4 ml/min, 0-7 min 50% -95% acetonitrile, 7-10 min 95% acetonitrile. Using the same saple: crude extract containing enniatin. M1,M2,M3 were sampled 1, 2, and 3 MS/MS at the same time, M1 0.1 ul, M6: 1ul; M1-1 using different collision energy
DOI: 10.5286/isis.e.rb2010577
title: Time resolved studies of the effect of cyanide order on phonon softening in the cubic NTE material Cd(CN)2

description: Materials which exhibit negative thermal expansion (NTE) are used in a number of applications to counteract the usual positive thermal expansion (PTE) of ordinary materials. Cubic cadmium cyanide is amongst the most important isotropic NTE materials with behaviour more than twice as extreme as that of better known systems such as ZrW2O8. Despite its importance, little is understood about lattice dynamics of Cd(CN)2; this is partly because the orientations of the molecular CN anion exhibit correlated disorder of a kind which has only recently been characterised. Our hypothesis is that CN orientational disorder affects the lattice dynamics responsible for NTE in Cd(CN)2. By studying the time-evolution of the inelastic neutron scattering after an abrupt cooling step, we will be able to extract the effect of long-timescale CN reorientations on the vibrational modes responsible from NTE.
DOI: 10.5286/isis.e.rb2010577-1
title: Time resolved studies of the effect of cyanide order on phonon softening in the cubic NTE material Cd(CN)2

description: Materials which exhibit negative thermal expansion (NTE) are used in a number of applications to counteract the usual positive thermal expansion (PTE) of ordinary materials. Cubic cadmium cyanide is amongst the most important isotropic NTE materials with behaviour more than twice as extreme as that of better known systems such as ZrW2O8. Despite its importance, little is understood about lattice dynamics of Cd(CN)2; this is partly because the orientations of the molecular CN anion exhibit correlated disorder of a kind which has only recently been characterised. Our hypothesis is that CN orientational disorder affects the lattice dynamics responsible for NTE in Cd(CN)2. By studying the time-evolution of the inelastic neutron scattering after an abrupt cooling step, we will be able to extract the effect of long-timescale CN reorientations on the vibrational modes responsible from NTE.
DOI: 10.15468/iqzy56
title: On unreported historical specimens of marine arthropods from the Solnhofen and Nusplingen Lithographic Limestones (Late Jurassic, Germany) housed at the Muséum national d’Histoire naturelle, Paris

description: This dataset contains the digitized treatments in Plazi based on the original journal article Odin, Giliane P., Charbonnier, Sylvain, Devillez, Julien, Schweigert, Günter (2019): On unreported historical specimens of marine arthropods from the Solnhofen and Nusplingen Lithographic Limestones (Late Jurassic, Germany) housed at the Muséum national d’Histoire naturelle, Paris. Geodiversitas 41 (17): 643-662, DOI: 10.5252/geodiversitas2019v41a17
DOI: 10.25573/serc.11914140.v1
title: Dataset: Soil properties and accretion rates of C3 and C4 marshes at the Global Change Research Wetland, Edgewater, Maryland

description: This data release includes soil properties for marsh sediment cores taken in both a C3 (Schoenoplectus americanus) and C4 (Spartina patens) dominated marsh adjacent to the SMARTX warming plots at the Smithsonian Environmental Research Center. Large push cores were collected from each of the dominant vegetation types and analyzed for bulk density, % organic matter, and accretion rates using 210Pb analysis.
DOI: 10.5281/zenodo.3695455
title: COCONUT: the COlleCtion of Open NatUral producTs.

description: COCONUT is a COlleCtion of Open NatUral producTs. To assemble COCONUT, data from 50 open access collections and databases of natural products was retrieved and curated. This archive contains two files: The MongoDB dump, the most complete version of the dataset, with extensive molecular annotations The COCONUT4MetFrag file, used for MetFrag To restore the dataset in MongoDB: <pre><code class="language-bash">unzip COCONUTv2.zip cd COCONUTv1/COCONUT/ mongorestore --db=COCONUT --noIndexRestore . </code></pre> It is generally useful to avoid restoring indexes, as they can interfere with the local installation. Here are the commands to rebuild indexes: <pre><code class="language-json">mongo use COCONUT db.sourceNaturalProduct.createIndex( {source:1}) db.sourceNaturalProduct.createIndex( {simpleInchi:1}) db.sourceNaturalProduct.createIndex( {simpleInchiKey:1}) db.uniqueNaturalProduct.createIndex( {inchi:1}) db.uniqueNaturalProduct.createIndex( {inchikey:1}) db.uniqueNaturalProduct.createIndex( {smiles:1}) db.uniqueNaturalProduct.createIndex( {clean_smiles:1}) db.uniqueNaturalProduct.createIndex( {molecular_formula:1}) db.uniqueNaturalProduct.createIndex( {name:1}) db.fragment.createIndex({signature:1}) db.fragment.createIndex({signature:1, withsugar:-1}) </code></pre> <br> <strong>This version of COCONUT is beta and will be curated further, but can already be used as it is.</strong>
DOI: 10.5281/zenodo.3695482
title: ERA5-Land monthly averaged dataset for Galaxy Panoply training

description: <strong>ERA5-Land monthly averaged data January 2019</strong> Dataset has been retrieved on the Copernicus Climate data Store (https://cds.climate.copernicus.eu/#!/home) and is meant to be used for teaching purposes only. This dataset is used in the Galaxy training on "Visualize Climate data with Panoply in Galaxy". See https://training.galaxyproject.org/ (topic: climate) for more information. <strong>Product type: </strong>Monthly averaged reanalysis <strong>Variable:</strong> 10m u-component of wind, 10m v-component of wind, 2m temperature, Leaf area index, high vegetation, Leaf area index, low vegetation, Snow cover, Snow depth <strong>Year:</strong> 2019 <strong>Month:</strong> January <strong>Time:</strong> 00:00 <strong>Format:</strong> NetCDF (experimental)
DOI: 10.5281/zenodo.3695481
title: ERA5-Land monthly averaged dataset for Galaxy Panoply training

description: <strong>ERA5-Land monthly averaged data January 2019</strong> Dataset has been retrieved on the Copernicus Climate data Store (https://cds.climate.copernicus.eu/#!/home) and is meant to be used for teaching purposes only. This dataset is used in the Galaxy training on "Visualize Climate data with Panoply in Galaxy". See https://training.galaxyproject.org/ (topic: climate) for more information. <strong>Product type: </strong>Monthly averaged reanalysis <strong>Variable:</strong> 10m u-component of wind, 10m v-component of wind, 2m temperature, Leaf area index, high vegetation, Leaf area index, low vegetation, Snow cover, Snow depth <strong>Year:</strong> 2019 <strong>Month:</strong> January <strong>Time:</strong> 00:00 <strong>Format:</strong> NetCDF (experimental)
DOI: 10.15784/601262
title: Phylogenomics of Antarctic notothenioid fishes

description: This data set contains alignments of DNA sequences obtained from restriction site associated markers (RADseq). Each alignment contains DNA sequence data sampled from 85 species of notothenioids fishes. The raw sequence data for each specimen is available on Genbank. There are two DNA sequence alignments. The m4 alignment has each locus represented by at least 4 individuals and contains 4,440,378 aligned sites. The m30 has each locus represented by at least 30 individuals and contains 2,669,472 aligned sites.
DOI: 10.15468/iqrpo4
title: Phylogenetic relationships of Nyctereutes Temminck, 1838 (Canidae, Carnivora, Mammalia) from early Pliocene of Çalta, Turkey

description: This dataset contains the digitized treatments in Plazi based on the original journal article Daguenet, Thibault, Sen, Sevket (2019): Phylogenetic relationships of Nyctereutes Temminck, 1838 (Canidae, Carnivora, Mammalia) from early Pliocene of Çalta, Turkey. Geodiversitas 41 (18): 663-677, DOI: 10.5252/geodiversitas2019v41a18
DOI: 10.5281/zenodo.3432796
title: Physiological data and PBK model code for chicken

description: This excel file provides physiological parameters and their inter-individual variability (mean, coefficient of variation, sample size) for chicken (<em>Gallus gallus domesticus</em>). These physiological parameters were estimated based on the results of extensive literature searches and specific experimental data described in Lautz et al., (2020). The R code presented here constitute generic physiologically based model for chicken. In addition, the function “soboljansen” was used to carry out sensitivity analysis using sobol plots. Each generic PBK model includes: 1. A deterministic modelling method, which represents only a single animal. 2. A probabilistic modelling approach to simulate the individual differences of the physiology within a population. Sensitivity analyses can be performed to identify which parameters have the most impact on the model’s outputs. Predictions can be compared with experimental data. Our model can be used to assess the influence of physiological factors on the kinetic of chemicals and provide guidance for assessing such critical factors in animal risk assessment. For PBK modelling purposes, species and chemical specific kinetics (e.g clearance, absorption rate, etc…) should be provided by the user. The full data collection and implementation of the models using case studies are described in Lautz et al., 2020 (DOI: 10.1016/j.envint.2020.105488).
description: NL; XLSX; l.lautz@science.ru.nl
description: {"references": ["L.S. Lautz, C. Nebbia, S. Hoeks, R. Oldenkamp, A.J. Hendriks, A.M.J. Ragas, J.L.C.M. Dorne. 2020. An Open Source Physiologically Based Kinetic Model for the Chicken (Gallus Gallus Domesticus): Calibration and Validation for the Prediction Residues in Tissues and Eggs. Environmental International. DOI: 10.1016/j.envint.2020.105488", "Leonie Lautz, Rik Oldenkamp, Jan Hendriks, Ad Ragas, Jean-Lou Dorne. 2020. Physiological data and PBK model code for chicken. DOI: 10.5281/zenodo.1414332"]}
DOI: 10.5255/ukda-sn-853687
title: The UK communicative development inventory database: words and gestures ages 8-18 months 2012-2016
DOI: 10.3886/e117021v3
title: Data and Code for: What Do Survey Data Tell Us about US Businesses?

description: This paper examines the reliability of survey data on business incomes, valuations, and rates of return, which are key inputs for studies of wealth inequality and entrepreneurial choice. We compare survey responses of business owners with available data from administrative tax records, brokered private business sales, and publicly traded company filings and document problems due to nonrepresentative samples and measurement errors across several surveys, subsamples, and years. We find that the discrepancies are economically relevant for the statistics of interest. We investigate reasons for these discrepancies and propose corrections for future survey designs.
description: All US businesses.
DOI: 10.15468/t76pr4
title: Asterolepis alticristata n. sp. (Antiarchi) from the Upper Devonian (Frasnian) of Nunavut, Canada, and a report on the antiarch diversity of the Fram Formation

description: This dataset contains the digitized treatments in Plazi based on the original journal article Downs, Jason P., Daeschler, Edward B., Lo, Nathanael, Carey, Emily N., Shubin, Neil H. (2019): Asterolepis alticristata n. sp. (Antiarchi) from the Upper Devonian (Frasnian) of Nunavut, Canada, and a report on the antiarch diversity of the Fram Formation. Geodiversitas 41 (19): 679-698, DOI: 10.5252/geodiversitas2019v41a19
DOI: 10.3886/e111161v1-22745
title: Replication Data and Code for: "Dominant Currency Paradigm"

description: This document describes the replication files for the paper “Dominant Currency Paradigm” and its Online Appendix. Any references in this document to sections, figures, and tables refer to the main paper or Online Appendix. <br><br>Abstract of the original publication:<br> We propose a ‘dominant currency paradigm’ with three key features: dominant currency pricing, pricing complementarities, and imported inputs in production. We test this paradigm using a new data set of bilateral price and volume indices for more than 2,500 country pairs that covers 91% of world trade, as well as detailed firm-product-country data for Colombian exports and imports. In strong support of the paradigm we find that: (1) Non-commodities terms of trade are uncorrelated with exchange rates. (2) The dollar ex- change rate quantitatively dominates the bilateral exchange rate in price pass-through and trade elasticity regressions, and this effect is increasing in the share of imports invoiced in dollars. (3) U.S. import volumes are significantly less sensitive to bilateral exchange rates, compared to other countries’ imports. (4) A 1% U.S. dollar appreciation against all other currencies predicts a 0.6% decline within a year in the volume of total trade between coun- tries in the rest of the world, controlling for the global business cycle. We characterize the transmission of, and spillovers from, monetary policy shocks in this environment.
DOI: 10.3886/e117021v2
title: Data and Code for: What Do Survey Data Tell Us about US Businesses?

description: This paper examines the reliability of survey data on business incomes, valuations, and rates of return, which are key inputs for studies of wealth inequality and entrepreneurial choice. We compare survey responses of business owners with available data from administrative tax records, brokered private business sales, and publicly traded company filings and document problems due to nonrepresentative samples and measurement errors across several surveys, subsamples, and years. We find that the discrepancies are economically relevant for the statistics of interest. We investigate reasons for these discrepancies and propose corrections for future survey designs.
description: All US businesses.
DOI: 10.5281/zenodo.3695562
title: Seismic dispersion and attenuation in Mancos shale - laboratory measurements

description: Rock Physics Data for Mancos Shale
DOI: 10.5281/zenodo.3695563
title: Seismic dispersion and attenuation in Mancos shale - laboratory measurements

description: Rock Physics Data for Mancos Shale
DOI: 10.5255/ukda-sn-854102
title: Workplace wellbeing study 2018-2019
DOI: 10.3886/e118023v1
title: Complex Pathways to Transfer

description: <br> Complex Pathways to Transfer: A Qualitative Comparative Analysis of the Transition from Community College to Four-Year University <br>
description: face-to-face interview~~
DOI: 10.3886/e118023
title: Complex Pathways to Transfer

description: <br> Complex Pathways to Transfer: A Qualitative Comparative Analysis of the Transition from Community College to Four-Year University <br>
description: face-to-face interview~~
DOI: 10.17632/bg36grn6nx.1
title: Data for: Dynamic Virtual Machine Consolidation using a multi-agent system to optimise energy efficiency in Cloud Computing

description: This dataset covers five data components of interest developed during our research which is published in “Dynamic Virtual Machine Consolidation using a multi-agent system to optimise energy efficiency in Cloud Computing”. They are: a patch file, peersim-1.0.5-nmcd.patch, for PeerSim version 1.0.5; four zip files contains the source code for the Gossip Contracts framework, GossipContracts-src.zip, the DVMC models, DVMC-src.zip, the module to process the Google dataset, GoogleTraceData-src.zip, and some utility methods, Util-src.zip; and the experiment results files, ResearchData-Results.zip.
DOI: 10.5281/zenodo.3695717
title: Supplemental Figure for Circulating MiRNA 887 is Differentially Expressed in ARDS and Modulates Endothelial Function

description: Supplemental Figure 1. A) Among subjects who developed ARDS, there was no difference in plasma miR-887-3p levels between subjects who were (n = 9) or were not (n = 10) receiving mechanical ventilation when the sample was collected. B) Similarly, among subjects who did not develop ARDS, there was no difference in plasma-887-3p levels between subjects who were (n = 13) or were not (n = 9) receiving mechanical ventilation when the sample was collected. Standard deviation shown.
description: Supported by: NIH/NHLBI 5K23 HL135263-02 NIH/NIGMS 1 R01 GM113995-01 NIH/NCATS UL1 TR001450
DOI: 10.5281/zenodo.3695718
title: Supplemental Figure for Circulating MiRNA 887 is Differentially Expressed in ARDS and Modulates Endothelial Function

description: Supplemental Figure 1. A) Among subjects who developed ARDS, there was no difference in plasma miR-887-3p levels between subjects who were (n = 9) or were not (n = 10) receiving mechanical ventilation when the sample was collected. B) Similarly, among subjects who did not develop ARDS, there was no difference in plasma-887-3p levels between subjects who were (n = 13) or were not (n = 9) receiving mechanical ventilation when the sample was collected. Standard deviation shown.
description: Supported by: NIH/NHLBI 5K23 HL135263-02 NIH/NIGMS 1 R01 GM113995-01 NIH/NCATS UL1 TR001450
DOI: 10.21227/xg3x-ss54
title: Illumination Dataset

description: The dataset includes sample indoor and outdoor sequences with considerable variations in illumination.
DOI: 10.3886/e118021v1
title: Development and psychometric properties of the Digital Difficulties Scale (DDS): An instrument to measure who is disadvantaged to fulfill basic needs by experiencing difficulties in using a smartphone or computer

description: The aim of this study is to develop and examine the psychometric properties of a new instrument, called the Digital Difficulties Scale (DDS).
DOI: 10.3886/e118021
title: DDS data

description: DDS data
DOI: 10.17632/bt8y4p8w87.1
title: Data for: Flower visitation and land cover associations of above ground- and below ground-nesting native bees in an agricultural region of south-east Australia

description: Data collected at 14 sites: 1) numbers of bees detected in traps and visiting flowers. 2) proportion of area within 1000 m and 250 m covered by different land cover types.
DOI: 10.15468/g8ynbf
title: Restes inédits de rongeurs caviomorphes du Paléogène de la région de Juanjui (Amazonie péruvienne): systématique, implications macro-évolutives et biostratigraphiques

description: This dataset contains the digitized treatments in Plazi based on the original journal article Assemat, Alexandre, Boivin, Myriam, Marivaux, Laurent, Pujos, François, Benites-Palomino, Aldo, Salas-Gismondi, Rodolfo, Tejada-Lara, Julia V., Varas-Malca, Rafael M., Negri, Francisco Ricardo (2019): Restes inédits de rongeurs caviomorphes du Paléogène de la région de Juanjui (Amazonie péruvienne): systématique, implications macro-évolutives et biostratigraphiques. Geodiversitas 41 (20): 699-730, DOI: 10.5252/geodiversitas2019v41a20
DOI: 10.17632/2s7fdng33y.1
title: Data for: Sedimentary characteristics and model of gravity flows in the Eocene Liushagang Formation in Weixi'nan Depression, South China Sea

description: Percentages of heavy mineral in total sediment fraction. Individual heavy mineral composition from studied samples.
DOI: 10.5281/zenodo.3695735
title: Fijiyama_DOI

description: This dataset is delivered with the Fijiyama plugin for reviewing purpose and as unit tests. However, this dataset could be useful for anyone starting processing image with Fijiyama.<br> More information at the official plugin page: https://imagej.net/Fijiyama
description: Usage: * First, watch the movie Fijiyama_DOI/Tutorial_first_steps_with_fijiyama.mp4 * For each of the four case study directories : * Enter directory : Fijiyama_DOI/Case_... * Read the case study Readme.txt. * Watch the corresponding tutorial movie. * (for the first case study) Watch this movie Fijiyama_DOI/Case_01_Two_Images/Tutorial_mismatch_evaluation.mp4
DOI: 10.5281/zenodo.3695736
title: Fijiyama_DOI

description: This dataset is delivered with the Fijiyama plugin for reviewing purpose and as unit tests. However, this dataset could be useful for anyone starting processing image with Fijiyama.<br> More information at the official plugin page: https://imagej.net/Fijiyama
description: Usage: * First, watch the movie Fijiyama_DOI/Tutorial_first_steps_with_fijiyama.mp4 * For each of the four case study directories : * Enter directory : Fijiyama_DOI/Case_... * Read the case study Readme.txt. * Watch the corresponding tutorial movie. * (for the first case study) Watch this movie Fijiyama_DOI/Case_01_Two_Images/Tutorial_mismatch_evaluation.mp4
DOI: 10.14469/hpc/6911
title: 2-methoxy-4-(3-oxobutyl)phenyl 2-(4-chlorophenyl)acetate

description: multiple peaks at 6.5-7.5 were anomalous, possibly due to the presence of unreacted zingerone.
DOI: 10.17632/psjph9z8gr.1
title: Data for: Linking the Online Destination Brand Experience and Brand Credibility with Tourists’ Behavioral Intentions Toward a Destination

description: Dataset used in the study 2a and 2b.
DOI: 10.15129/683c43b1-00d6-47f4-b8dd-8e4a2062ba31
title: Data for: "Size-Dependent Characterisation of Deep UV Micro-Light-Emitting Diodes"

description: This dataset contains the tabulated data plotted in the abstract submitted to IWN2020, titled "Size-Dependent Characterisation of Deep UV Micro-Light-Emitting Diodes". The data is available in Excel spreadsheet format and includes L-I, EQE peak current density vs. pixel size, Wavelength peak emission red shift versus pixel size and Frequency response vs. pixel size.
DOI: 10.17632/ch9gdb9rv9.1
title: Data for: Application of multi-criteria decision analysis (MCDA) to assess sustainability in end-of-life alternatives for waste plastics from the fishing sector in Norway.
DOI: 10.7910/dvn/8yvinu/ch7jee
title: MedRed_AMT_labels.csv

description: The original Reddit posts and the subreddits in which they were posted are provided (without any post-processing) together with the medical entities of two types (symptoms and drugs) extracted by Mechanical Turk Workers.