cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6814550.v1
title: Predicting the Results of Evaluation Procedures of Academics: Additional Materials

description: Additional materials containing the results of the analyses described in the paper entitled "Predicting the Results of Evaluation Procedures of Academics".In the tables, Precision (P), Recall (R) and F-Measure (FM) values are reported for each Recruitment Field (RF) and Area. The results are ordered in descending order with respect to the F-measure values. Non-bibliometric disciplines have a gray background.The data are organized as follows:<b>-Table 1:</b> contains the performance of the SVM algorithm for academic level I (Full Professor) using 291 predictors. Analysis of the 184 recruitment fields;<b>-Table 2:</b> contains the performance of the SVM algorithm for academic level II (Associate Professor) using 291 predictors. Analysis of the 184 recruitment fields;<b>-Table 3:</b> contains the performance of the SVM algorithm for academic level I (full Professor) and II (Associate Professor). Analysis of the scientific areas;<b>-Table 4:</b> contains the performance of the SVM algorithm for academic level I (Full Professor) using the top 15 predictors. Analysis of the 184 recruitment fields;<b>-Table 5:</b> contains the performance of the SVM algorithm for academic level II (Associate Professor) using the top 15 predictors. Analysis of the 184 recruitment fields.<br>
DOI: 10.6084/m9.figshare.6814550.v2
title: Predicting the Results of Evaluation Procedures of Academics: Additional Materials

description: Additional materials containing the results of the analyses described in the paper entitled "Predicting the Results of Evaluation Procedures of Academics".In the tables, Precision (P), Recall (R) and F-Measure (FM) values are reported for each Recruitment Field (RF) and Area. The results are ordered in descending order with respect to the F-measure values. Non-bibliometric disciplines have a gray background.The data are organized as follows:<b>-Table 1:</b> contains the performance of the SVM algorithm for academic level I (Full Professor) using 291 predictors. Analysis of the 184 recruitment fields;<b>-Table 2:</b> contains the performance of the SVM algorithm for academic level II (Associate Professor) using 291 predictors. Analysis of the 184 recruitment fields;<b>-Table 3:</b> contains the performance of the SVM algorithm for academic level I (full Professor) and II (Associate Professor). Analysis of the scientific areas;<b>-Table 4:</b> contains the performance of the SVM algorithm for academic level I (Full Professor) using the top 15 predictors. Analysis of the 184 recruitment fields;<b>-Table 5:</b> contains the performance of the SVM algorithm for academic level II (Associate Professor) using the top 15 predictors. Analysis of the 184 recruitment fields.<br>
DOI: 10.15468/ytnvq4
title: Bombus rubriventris: type locality, different histories of bumblebees in the New World, and a likely invertebrate extinction

description: This dataset contains the digitized treatments in Plazi based on the original journal article Williams, Paul H. (2014): Bombus rubriventris: type locality, different histories of bumblebees in the New World, and a likely invertebrate extinction. Journal of Natural History 49 (19): 1159-1171, DOI: 10.1080/00222933.2014.954022
DOI: 10.6084/m9.figshare.6814502
title: Predicting the Results of Evaluation Procedures of Academics: Appendices

description: The three appendices of the paper entitled "Predicting the Results of Evaluation Procedures of Academics":<b>-Appendix A:</b> a list enumerating all the scientific areas (first indentation level), macro-sectors (second indentation level) and recruitment fields (third indentation level), as they have been defined at the beginning of the ASN.Since all the names have been defined only in Italian, we use here the English translation provided by the Italian National University Council (CUN) - the elected body representing the Italian University System.<b>-Appendix B:</b> a table showing basic statistics of the 2012 session of the ASN for each recruitment field.In the second column, ”B” and ”NB” denotes bibliometric and non-bibliometric recruitment fields, respectively.The other columns show the number of applicants, number of habilitations and fraction of habilitations for each acadmic level (i.e. full professor and associate professor).<b>-Appendix C:</b> a table reporting the name, type and description of the predictors selected by the feature selection algorithm.
DOI: 10.6084/m9.figshare.6814502.v1
title: Predicting the Results of Evaluation Procedures of Academics: Appendices

description: The three appendices of the paper entitled "Predicting the Results of Evaluation Procedures of Academics":<b>-Appendix A:</b> a list enumerating all the scientific areas (first indentation level), macro-sectors (second indentation level) and recruitment fields (third indentation level), as they have been defined at the beginning of the ASN.Since all the names have been defined only in Italian, we use here the English translation provided by the Italian National University Council (CUN) - the elected body representing the Italian University System.<b>-Appendix B:</b> a table showing basic statistics of the 2012 session of the ASN for each recruitment field.In the second column, ”B” and ”NB” denotes bibliometric and non-bibliometric recruitment fields, respectively.The other columns show the number of applicants, number of habilitations and fraction of habilitations for each acadmic level (i.e. full professor and associate professor).<b>-Appendix C:</b> a table reporting the name, type and description of the predictors selected by the feature selection algorithm.
DOI: 10.6084/m9.figshare.6814496.v1
title: Cell wall- and hormones-related changes during dormancy transition in rhizome buds of p.kingianum

description: We examined physiological, cytological , transformatics changes attempting to provide an assistant understanding for mechanism of bud development in p.kingianum
DOI: 10.6084/m9.figshare.6814451
title: Increase in the thermostability of <i>Bacillus</i> sp. strain TAR-1 xylanase using a site saturation mutagenesis library

description: Site saturation mutagenesis library is a recently developed technique, in which any one out of all amino acid residues in a target region is substituted into other 19 amino acid residues. In this study, we used this technique to increase the thermostability of a GH10 xylanase, XynR, from <i>Bacillus</i> sp. strain TAR-1. We hypothesized that the substrate binding region of XynR is flexible, and that the thermostability of XynR will increase if the flexibility of the substrate binding region is decreased without impairing the substrate binding ability. Site saturation mutagenesis libraries of amino acid residues Tyr43–Lys115 and Ala300–Asn325 of XynR were constructed. By screening 480 clones, S92E was selected as the most thermostable one, exhibiting the residual activity of 80% after heat treatment at 80°C for 15 min in the hydrolysis of Remazol Brilliant Blue-xylan. Our results suggest that this strategy is effective for stabilization of GH10 xylanase. <b>Abbreviations</b>: DNS: 3,5-dinitrosalicylic acid; RBB-xylan: Remazol Brilliant Blue-xylan Site saturation mutagenesis library of GH10 xylanase XynR was constructed, expressed in <i>E. coli</i> expression system, and screened.
DOI: 10.6084/m9.figshare.6814490
title: Identification of novel long chain <i>N</i>-acylhomoserine lactones of chain length C<sub>20</sub> from the marine phototrophic bacterium <i>Rhodovulum sulfidophilum</i>

description: Gram-negative bacterial quorum sensing is mainly regulated by an extracellularly produced <i>N</i>-acylhomoserine lactone (AHL). AHL consists of a lactone ring and an acyl chain, which generally varies from C<sub>4</sub> to C<sub>18</sub> in length and affords species-specific variety. In this study, we developed an ultra-high performance liquid chromatography tandem mass spectrometry system and detected two kinds of long chain AHLs with chain length C<sub>20</sub> from the reverse-phase thin layer chromatography-fractionated cultured supernatant of the marine photosynthetic bacterium <i>Rhodovulum sulfidophilum</i>. By fragmentation search analysis to detect compounds with a homoserine lactone ring moiety for data dependent acquisition, a minor AHL, presumed to be 3-OH-C<sub>18</sub>-homoserine lactone (HSL), was also found. Among the detected C<sub>20</sub>-HSLs, 3-OH-C<sub>20</sub>-HSL was structurally identified and 3-OH-C<sub>20:1</sub>-HSL was strongly suggested. To our knowledge, this is the first report to show a novel AHL with the longest C<sub>20</sub> acyl side chain found to date. <b>Abbreviations:</b> AGC: automatic gain control; AHL: <i>N</i>-acylhomoserine lactone; CD: cyclodextrin; CID: collision induced dissociation; DDA: data dependent acquisition; EPI: enhanced product ion; FISh: fragment ion search; HCD: high energy collisional dissociation; HSL: homoserine lactone; IT: injection time; LC: liquid chromatography; MS: mass spectrometry; PRM: parallel reaction monitoring; RP: reverse phase; SRM: selected reaction monitoring; TLC: thin layer chromatography; UHPLC: ultra high performance liquid chromatography Novel longest acyl chained HSL produced by <i>R. sulfidophilum</i>.
DOI: 10.6084/m9.figshare.6814451.v1
title: Increase in the thermostability of <i>Bacillus</i> sp. strain TAR-1 xylanase using a site saturation mutagenesis library

description: Site saturation mutagenesis library is a recently developed technique, in which any one out of all amino acid residues in a target region is substituted into other 19 amino acid residues. In this study, we used this technique to increase the thermostability of a GH10 xylanase, XynR, from <i>Bacillus</i> sp. strain TAR-1. We hypothesized that the substrate binding region of XynR is flexible, and that the thermostability of XynR will increase if the flexibility of the substrate binding region is decreased without impairing the substrate binding ability. Site saturation mutagenesis libraries of amino acid residues Tyr43–Lys115 and Ala300–Asn325 of XynR were constructed. By screening 480 clones, S92E was selected as the most thermostable one, exhibiting the residual activity of 80% after heat treatment at 80°C for 15 min in the hydrolysis of Remazol Brilliant Blue-xylan. Our results suggest that this strategy is effective for stabilization of GH10 xylanase. <b>Abbreviations</b>: DNS: 3,5-dinitrosalicylic acid; RBB-xylan: Remazol Brilliant Blue-xylan Site saturation mutagenesis library of GH10 xylanase XynR was constructed, expressed in <i>E. coli</i> expression system, and screened.
DOI: 10.6084/m9.figshare.6814490.v1
title: Identification of novel long chain <i>N</i>-acylhomoserine lactones of chain length C<sub>20</sub> from the marine phototrophic bacterium <i>Rhodovulum sulfidophilum</i>

description: Gram-negative bacterial quorum sensing is mainly regulated by an extracellularly produced <i>N</i>-acylhomoserine lactone (AHL). AHL consists of a lactone ring and an acyl chain, which generally varies from C<sub>4</sub> to C<sub>18</sub> in length and affords species-specific variety. In this study, we developed an ultra-high performance liquid chromatography tandem mass spectrometry system and detected two kinds of long chain AHLs with chain length C<sub>20</sub> from the reverse-phase thin layer chromatography-fractionated cultured supernatant of the marine photosynthetic bacterium <i>Rhodovulum sulfidophilum</i>. By fragmentation search analysis to detect compounds with a homoserine lactone ring moiety for data dependent acquisition, a minor AHL, presumed to be 3-OH-C<sub>18</sub>-homoserine lactone (HSL), was also found. Among the detected C<sub>20</sub>-HSLs, 3-OH-C<sub>20</sub>-HSL was structurally identified and 3-OH-C<sub>20:1</sub>-HSL was strongly suggested. To our knowledge, this is the first report to show a novel AHL with the longest C<sub>20</sub> acyl side chain found to date. <b>Abbreviations:</b> AGC: automatic gain control; AHL: <i>N</i>-acylhomoserine lactone; CD: cyclodextrin; CID: collision induced dissociation; DDA: data dependent acquisition; EPI: enhanced product ion; FISh: fragment ion search; HCD: high energy collisional dissociation; HSL: homoserine lactone; IT: injection time; LC: liquid chromatography; MS: mass spectrometry; PRM: parallel reaction monitoring; RP: reverse phase; SRM: selected reaction monitoring; TLC: thin layer chromatography; UHPLC: ultra high performance liquid chromatography Novel longest acyl chained HSL produced by <i>R. sulfidophilum</i>.
DOI: 10.6084/m9.figshare.6814418
title: Supplementary Material for: Psychometric Properties of a Modified KINDL-R Questionnaire for Adolescents and Adults, and Construction of a Brief Version, the KINDL-A(dult)B(rief) Questionnaire, KINDL-AB

description: <b><i>Background/Aims:</i></b> The generic quality of life KINDL-R ­questionnaire is validated for use in children/adolescents ≤16 years. The aim of this cross-sectional investigation was to modify the KINDL-R questionnaire for use in adults and to validate its psychometric properties. <b><i>Methods:</i></b> Five items of the KINDL-R questionnaire were adapted and the newly developed KINDL-A(dult) questionnaire administered to 255 patients with hereditary and acquired bleeding disorders (mean age 53 years). Its internal consistency and convergent and divergent construct validity were investigated and confirmatory factor analysis was used to evaluate the latent factor structure. <b><i>Results:</i></b> The KINDL-A questionnaire showed satisfactory reliability, varying construct validity, but inconclusive factor structure. The KINDL-AB(rief) was developed by removing half of the items and combining 2 sub-axes. This led to factor loadings between 0.62 and 0.91 and increased overall fit (Goodness of fit &gt; 0.8 and Root Mean Square Error of Approximation, RMSEA, &lt; 0.08). Results were validated in 966 healthy blood donors (mean age 38 years). In this group, the KINDL-AB questionnaire showed factor loadings between 0.43 and 0.77, Goodness of fit &gt; 0.95 and RMSEA &lt; 0.05. <b><i>Conclusions:</i></b> The new KINDL-AB suggests sufficient to good psychometric properties in adult patients with hereditary and acquired bleeding disorders.
DOI: 10.6084/m9.figshare.6814409
title: Supplementary Material for: Favorable Response to Treatment with Avelumab in an HIV-Positive Patient with Advanced Merkel Cell Carcinoma Previously Refractory to Chemotherapy

description: Avelumab is indicated for the management of Merkel cell carcinoma, a rare and aggressive neuroendocrine skin cancer. Its regulatory approval followed the positive outcome of a Phase 2 trial on 88 patients with stage IV disease, which excluded patients with immunodeficiency due to HIV, a risk factor for this cancer type. We report a positive and sustained response to avelumab in an HIV-positive patient with stage IV Merkel cell carcinoma refractory to previous chemotherapy (cisplatin/etoposide) and radiotherapy. Five cycles of avelumab 10 mg/m<sup>2</sup> resulted in the resolution of tumor activity visualized using PET-CT scanning in all affected lymph nodes. The only major side effect associated with avelumab was thyroiditis and mild hypothyroidism, a known adverse effect of this treatment, which was well controlled by L-thyroxine treatment. Treatment is ongoing and the positive response has been sustained during 5 further cycles of treatment up to date. This apparently durable response is consistent with the earlier clinical trial experience with avelumab, but seen here in a patient with HIV-associated immunodeficiency as a predisposing factor (an exclusion criterion from the previous trial). Further clinical trials with avelumab in a broader patient population with Merkel cell carcinoma are warranted.
DOI: 10.6084/m9.figshare.6814370
title: iCub Facility - Ubuntu 18.04 (x64) VM

description: This is an Ubuntu 18.04 (x64) Virtual Machine (<b>OVF format, OVA extension</b>) pre-configured with YARP + iCub software.<br>The VM is archived within <b>two</b> files to comply with size limitations. Use your preferred tool to unpack the VM at once.<br><br>VM credentials are:- login: <b>icub</b>- password: <b>icub</b>
DOI: 10.6084/m9.figshare.6814370.v1
title: iCub Facility - Ubuntu 18.04 (x64) VM

description: This is an Ubuntu 18.04 (x64) Virtual Machine (<b>OVF format, OVA extension</b>) pre-configured with YARP + iCub software.<br>The VM is archived within <b>two</b> files to comply with size limitations. Use your preferred tool to unpack the VM at once.<br><br>VM credentials are:- login: <b>icub</b>- password: <b>icub</b>
DOI: 10.6084/m9.figshare.6814073
title: Education Material.zip

description: This fileset contains lab instruction, schematic and pcb photos of thermal control kit which is used in control engineering laboratory.
DOI: 10.6084/m9.figshare.6814037
title: MOESM1 of Quantifying the unquantifiable: why Hymenoptera, not Coleoptera, is the most speciose animal order

description: Additional file 1: Tables S1â S4. Parasitoid lists used in genus-specialist P:H ratio calculations.
DOI: 10.6084/m9.figshare.6814037.v1
title: MOESM1 of Quantifying the unquantifiable: why Hymenoptera, not Coleoptera, is the most speciose animal order

description: Additional file 1: Tables S1â S4. Parasitoid lists used in genus-specialist P:H ratio calculations.
DOI: 10.6084/m9.figshare.6814022
title: Additional file 5 of Gene expression profiles in neurological tissues during West Nile virus infection: a critical meta-analysis

description: Result lists from GSEA analyses in group 2. The table displays result lists of the GSEA in group 2. Rows are representing those GO terms, for which at least two genes were available in each of the analysis variants. The GO-ID, as well as their specific name is given in the first column. The p-values (‘.p’) and adjusted p-values (‘.q’) are shown for each analysis variant (early, late and intermediate merging). The number of genes associated to the GO-term is presented in column ‘nPGenes’. The number of genes associated to the GO-term, which can be found in the data is presented in columns ‘early.nPGenes’ and ‘int.nPGenes’. (XLSX 947 kb)
DOI: 10.6084/m9.figshare.6814022.v1
title: Additional file 5 of Gene expression profiles in neurological tissues during West Nile virus infection: a critical meta-analysis

description: Result lists from GSEA analyses in group 2. The table displays result lists of the GSEA in group 2. Rows are representing those GO terms, for which at least two genes were available in each of the analysis variants. The GO-ID, as well as their specific name is given in the first column. The p-values (‘.p’) and adjusted p-values (‘.q’) are shown for each analysis variant (early, late and intermediate merging). The number of genes associated to the GO-term is presented in column ‘nPGenes’. The number of genes associated to the GO-term, which can be found in the data is presented in columns ‘early.nPGenes’ and ‘int.nPGenes’. (XLSX 947 kb)
DOI: 10.6084/m9.figshare.6814007
title: Additional file 4 of Gene expression profiles in neurological tissues during West Nile virus infection: a critical meta-analysis

description: Result lists of differential analyses in group 2. The table displays result lists of the differential analyses in group 2. Rows representing those genes, common in the two individual studies of group 2. Two identifiers (‘GeneID’ and ‘Gene Symbol’) are used. Columns 3 to 14 are displaying the outcomes for different analysis variants: Columns, starting with the term ‘early’ are results from the ‘early merging’; same applies for the ‘late merging’. Columns of the individual studies begin with their identifier (see Fig. 4). For each, the p-values (‘.p’) and the adjusted p-values (‘.q’) were calculated. For the early and late merging, the absolute value of the test-statistic was also given out (‘.t.abs’). Columns ‘logFC.min’ and ‘logFC.max’ are showing the gene-wise minimum and maximum values of the logFCs from the individual studies. (XLSX 5042 kb)
DOI: 10.6084/m9.figshare.6814010
title: MOESM9 of Feature optimization in high dimensional chemical space: statistical and data mining solutions

description: Additional file 9: Table S9. PubChem high throughput screen results of 3-(1H-1,3-Benzadiol-2-yl)quinoline and 2-(4-Methoxyphenyl)-7-methylimidazo[1,2-a]pyridine.
DOI: 10.6084/m9.figshare.6814010.v1
title: MOESM9 of Feature optimization in high dimensional chemical space: statistical and data mining solutions

description: Additional file 9: Table S9. PubChem high throughput screen results of 3-(1H-1,3-Benzadiol-2-yl)quinoline and 2-(4-Methoxyphenyl)-7-methylimidazo[1,2-a]pyridine.
DOI: 10.6084/m9.figshare.6814007.v1
title: Additional file 4 of Gene expression profiles in neurological tissues during West Nile virus infection: a critical meta-analysis

description: Result lists of differential analyses in group 2. The table displays result lists of the differential analyses in group 2. Rows representing those genes, common in the two individual studies of group 2. Two identifiers (‘GeneID’ and ‘Gene Symbol’) are used. Columns 3 to 14 are displaying the outcomes for different analysis variants: Columns, starting with the term ‘early’ are results from the ‘early merging’; same applies for the ‘late merging’. Columns of the individual studies begin with their identifier (see Fig. 4). For each, the p-values (‘.p’) and the adjusted p-values (‘.q’) were calculated. For the early and late merging, the absolute value of the test-statistic was also given out (‘.t.abs’). Columns ‘logFC.min’ and ‘logFC.max’ are showing the gene-wise minimum and maximum values of the logFCs from the individual studies. (XLSX 5042 kb)
DOI: 10.7910/dvn/mhuc8c/dpmz7k
title: PS 2020 Replication Data.tab

description: Preliminary Replication Data
DOI: 10.6084/m9.figshare.6813992
title: Additional file 3 of Gene expression profiles in neurological tissues during West Nile virus infection: a critical meta-analysis

description: Result lists from GSEA analyses in group 1. The table displays result lists of the GSEA in group 1. Rows are representing those GO terms, for which at least two genes were available in each of the analysis variants. The GO-ID, as well as their specific name is given in the first column. The p-values (‘.p’) and adjusted p-values (‘.q’) are shown for each analysis variant (early, late and intermediate merging). The number of genes associated to the GO-term is presented in column ‘nPGenes’. The number of genes associated to the GO-term, which can be found in the data is presented in columns ‘early.nPGenes’ and ‘int.nPGenes’. (XLSX 1322 kb)
DOI: 10.6084/m9.figshare.6813992.v1
title: Additional file 3 of Gene expression profiles in neurological tissues during West Nile virus infection: a critical meta-analysis

description: Result lists from GSEA analyses in group 1. The table displays result lists of the GSEA in group 1. Rows are representing those GO terms, for which at least two genes were available in each of the analysis variants. The GO-ID, as well as their specific name is given in the first column. The p-values (‘.p’) and adjusted p-values (‘.q’) are shown for each analysis variant (early, late and intermediate merging). The number of genes associated to the GO-term is presented in column ‘nPGenes’. The number of genes associated to the GO-term, which can be found in the data is presented in columns ‘early.nPGenes’ and ‘int.nPGenes’. (XLSX 1322 kb)
DOI: 10.6084/m9.figshare.6813983
title: MOESM7 of Feature optimization in high dimensional chemical space: statistical and data mining solutions

description: Additional file 7: Table S10. Weighted burden number descriptor values (PCAD) of FDA approved drugs and that of PubChem molecules which were enlisted in TableÂ 3.
DOI: 10.6084/m9.figshare.6813983.v1
title: MOESM7 of Feature optimization in high dimensional chemical space: statistical and data mining solutions

description: Additional file 7: Table S10. Weighted burden number descriptor values (PCAD) of FDA approved drugs and that of PubChem molecules which were enlisted in TableÂ 3.