cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5918400
title: Fluctuating exposures to UV radiation and Erythromycin result in increased mean and variance in fitness in novel environments

description: List of non-synonymous mutations identified in populations subjected to UV radiation and Erythromycin. Mutations identified in whole-population as well as in sub-populations resistant to either rifampicin or nalidixic acid are listed in separate files.
DOI: 10.5281/zenodo.5595288
title: Time-lapse of AARTFAAC detections of radio meteors in Perseids 2020

description: LOFAR AARTFAAC images (integrated over all observing bands) during the Perseids meteor shower in the night 2020 August 12 --13. The large-scale diffuse emission is the Galactic plane. The brightest radio sources Cassiopeia~A and Cygnus~A have been subtracted, sometimes leaving some artefacts. In red, trajectories as computed from the CAMS BeNeLux optical observations are overlaid. Observing frequencies were in the range 30 to 60 MHz.
DOI: 10.5281/zenodo.5595287
title: Time-lapse of AARTFAAC detections of radio meteors in Perseids 2020

description: LOFAR AARTFAAC images (integrated over all observing bands) during the Perseids meteor shower in the night 2020 August 12 --13. The large-scale diffuse emission is the Galactic plane. The brightest radio sources Cassiopeia~A and Cygnus~A have been subtracted, sometimes leaving some artefacts. In red, trajectories as computed from the CAMS BeNeLux optical observations are overlaid. Observing frequencies were in the range 30 to 60 MHz.
DOI: 10.6084/m9.figshare.17195072
title: melon pangenome

description: We constructed a melon pangenome based on 297 accessions comprising 168 Mb novel sequences and 4,325 novel genes. The non-reference genome sequences and annotated genes were retrieved. This project includes a list of the dataset as follow.
DOI: 10.6084/m9.figshare.17195072.v2
title: melon pangenome

description: We constructed a melon pangenome based on 297 accessions comprising 168 Mb novel sequences and 4,325 novel genes. The non-reference genome sequences and annotated genes were retrieved. This project includes a list of the dataset as follow.
DOI: 10.6084/m9.figshare.19091731
title: File S1.xlsx from Global pleiotropic effects in adaptively evolved <i>Escherichia coli</i> lacking CRP reveal molecular mechanisms that define the growth physiology

description: Evolution facilitates emergence of fitter phenotypes by efficient allocation of cellular resources in conjunction with beneficial mutations. However, system-wide pleiotropic effects that redress the perturbations to the apex node of the transcriptional regulatory networks remain unclear. Here, we elucidate that absence of global transcriptional regulator CRP in <i>Escherichia coli</i> results in alterations in key metabolic pathways under glucose respiratory conditions, favouring stress or hedging related functions over growth-enhancing functions. Further, we disentangle the growth-mediated effects from the CRP regulation-specific effects on these metabolic pathways. We quantitatively illustrate that the loss of CRP perturbs proteome efficiency, as evident from metabolic as well as ribosomal proteome fractions, that corroborated with intracellular metabolite profiles. To address how <i>E. coli</i> copes with such systemic defect, we evolved <i>Δcrp</i> mutant in the presence of glucose. Besides acquiring mutations in the promoter of glucose transporter <i>ptsG</i>, the evolved populations recovered the metabolic pathways to their pre-perturbed state coupled with metabolite re-adjustments, which altogether enabled increased growth. By contrast to <i>Δcrp</i> mutant, the evolved strains remodelled their proteome efficiency toward biomass synthesis, albeit, at the expense of carbon efficiency. Overall, we comprehensively illustrate the genetic and metabolic basis of pleiotropic effects, fundamental for understanding the growth physiology.
DOI: 10.6084/m9.figshare.19091731.v1
title: File S1.xlsx from Global pleiotropic effects in adaptively evolved <i>Escherichia coli</i> lacking CRP reveal molecular mechanisms that define the growth physiology

description: Evolution facilitates emergence of fitter phenotypes by efficient allocation of cellular resources in conjunction with beneficial mutations. However, system-wide pleiotropic effects that redress the perturbations to the apex node of the transcriptional regulatory networks remain unclear. Here, we elucidate that absence of global transcriptional regulator CRP in <i>Escherichia coli</i> results in alterations in key metabolic pathways under glucose respiratory conditions, favouring stress or hedging related functions over growth-enhancing functions. Further, we disentangle the growth-mediated effects from the CRP regulation-specific effects on these metabolic pathways. We quantitatively illustrate that the loss of CRP perturbs proteome efficiency, as evident from metabolic as well as ribosomal proteome fractions, that corroborated with intracellular metabolite profiles. To address how <i>E. coli</i> copes with such systemic defect, we evolved <i>Δcrp</i> mutant in the presence of glucose. Besides acquiring mutations in the promoter of glucose transporter <i>ptsG</i>, the evolved populations recovered the metabolic pathways to their pre-perturbed state coupled with metabolite re-adjustments, which altogether enabled increased growth. By contrast to <i>Δcrp</i> mutant, the evolved strains remodelled their proteome efficiency toward biomass synthesis, albeit, at the expense of carbon efficiency. Overall, we comprehensively illustrate the genetic and metabolic basis of pleiotropic effects, fundamental for understanding the growth physiology.
DOI: 10.5281/zenodo.5918496
title: Data for peer review of an article (JGR solid earth) in 2022

description: This is a zip file containing all the data used to generate figures and tables of the manuscript of a paper being submitted. Please see _README.txt at first. Note: this data file is for a peer review only.
DOI: 10.5281/zenodo.5832579
title: SDR moonbounce signals at 433.8MHz

description: This dataset contains recordings of a moon-bounce experiment performed on 2021-10-05 with the Dwingeloo Radio Telescope (operating under call sign PI9CAM). UHF signals were transmitted with the telescope, and their Moon echo was received about 2.5 seconds later. Most signals were transmitted and received with an Ettus USRP B210. Parallel to the USRP, a board based on a Semtech LR1110 LoRa chip was used to receive both the uplink and downlink signal. Some of the signals were even transmitted using this board. For the LoRa signals, the board recorded the delay between transmit and receive and deduced the distance to the Lunar surface in real time. The output of the board is in lora_log_horizontal.txt and lora_log_vertical.txt. Times in these file are local time (CEST). The data was converted to SigMF format. The metadata contains information on the device used to transmit and receive the signals, and about the modulation used. Signals were transmitted with a 210kHz offset. The absolute timestamps are not very well calibrated: the computer doing the recording was not synchronized. The timestamp in the filename represents the creation time of the file, the time in the metadata approximates the time of the first sample (we guessed the delay based on later experiments). The LoRa moon bounce was a distance record for LoRa. We made a press release for this. The basis for the distance mentioned in the press release was the actual Lunar distance at the time of the Moon bounce in camras-rx-2021_10_05_14_38_49.sigmf-data.
DOI: 10.5281/zenodo.5832578
title: SDR moonbounce signals at 433.8MHz

description: This dataset contains recordings of a moon-bounce experiment performed on 2021-10-05 with the Dwingeloo Radio Telescope (operating under call sign PI9CAM). UHF signals were transmitted with the telescope, and their Moon echo was received about 2.5 seconds later. Most signals were transmitted and received with an Ettus USRP B210. Parallel to the USRP, a board based on a Semtech LR1110 LoRa chip was used to receive both the uplink and downlink signal. Some of the signals were even transmitted using this board. For the LoRa signals, the board recorded the delay between transmit and receive and deduced the distance to the Lunar surface in real time. The output of the board is in lora_log_horizontal.txt and lora_log_vertical.txt. Times in these file are local time (CEST). The data was converted to SigMF format. The metadata contains information on the device used to transmit and receive the signals, and about the modulation used. Signals were transmitted with a 210kHz offset. The absolute timestamps are not very well calibrated: the computer doing the recording was not synchronized. The timestamp in the filename represents the creation time of the file, the time in the metadata approximates the time of the first sample (we guessed the delay based on later experiments). The LoRa moon bounce was a distance record for LoRa. We made a press release for this. The basis for the distance mentioned in the press release was the actual Lunar distance at the time of the Moon bounce in camras-rx-2021_10_05_14_38_49.sigmf-data.
DOI: 10.6084/m9.figshare.18858224
title: Supplemental Material for Teixeira et al. 2022 (Eumida sanguinea cryptic complex)

description: Tables S1 and S2, as well Figures S1 and S2 for the work "From 13 to 22 in a second stroke: revisiting the European Eumida sanguinea (Phyllodocidae: Annelida) species complex", published in the Zoological Journal of the Linnean Society. DOI: https://doi.org/10.1093/zoolinnean/zlab100
DOI: 10.6084/m9.figshare.18858224.v2
title: Supplemental Material for Teixeira et al. 2022 (Eumida sanguinea cryptic complex)

description: Tables S1 and S2, as well Figures S1 and S2 for the work "From 13 to 22 in a second stroke: revisiting the European Eumida sanguinea (Phyllodocidae: Annelida) species complex", published in the Zoological Journal of the Linnean Society. DOI: https://doi.org/10.1093/zoolinnean/zlab100
DOI: 10.6084/m9.figshare.18858224.v1
title: Supplemental Material for Teixeira et al. 2022 (Eumida sanguinea cryptic complex)

description: Tables S1 and S2, as well Figures S1 and S2 for the work "From 13 to 22 in a second stroke: revisiting the European Eumida sanguinea (Phyllodocidae: Annelida) species complex", published in the Zoological Journal of the Linnean Society. DOI: https://doi.org/10.1093/zoolinnean/zlab100
DOI: 10.34740/kaggle/dsv/3111068
title: Mahanagar Yatayat Dataset
DOI: 10.5281/zenodo.5914138
title: Dateset of results: yearly operation for AMTP and MAND - steady state simulation (D3.3 D5.1)

description: Resuts of the steady state simulations carried out (in the frame of the ASTEP project) for the daily and yearly operation of the ASTEP concept. The dataset include data related to two reference cases and different options of design such as layout, locations, and demand variations. The results are related to the Deliverables D3.3 Design of the daily and yearly operation for AMTP and MAND and D5.1 Report on the integrated ASTEP model development and Conceptual Designs
DOI: 10.5281/zenodo.5914137
title: Dateset of results: yearly operation for AMTP and MAND - steady state simulation (D3.3 D5.1)

description: Resuts of the steady state simulations carried out (in the frame of the ASTEP project) for the daily and yearly operation of the ASTEP concept. The dataset include data related to two reference cases and different options of design such as layout, locations, and demand variations. The results are related to the Deliverables D3.3 Design of the daily and yearly operation for AMTP and MAND and D5.1 Report on the integrated ASTEP model development and Conceptual Designs
DOI: 10.5519/qd.hift9l25
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5281/zenodo.5918508
title: Multilingual MigrationsKB: A Mulitlingual Knowledge Base of Migration related annotated Tweets

description: <strong>Multilingual MigrationskB (MGKB) </strong>is a mulitlingual extended version of English MGKB. The tweets geotagged with Geo location from 32 European Countries (<em><strong>Austria, Belgium, Bulgaria, Croatia, Cyprus, Czech, Denmark, Estonia, Finland, France, Germany, Greece, Hungary, Ireland, Italy, Latvia, Lithuania, Luxembourg, Malta, Netherlands, Poland, Portugal, Romania, Slovakia, Slovenia, Spain, Sweden, Iceland, Liechtenstein, Norway, Switzerland, the United Kingdom</strong></em>) are extracted and filtered by 11 languages (<em><strong>English, French, Finnish, German, Greek, Dutch, Hungarian, Italian, Polish, Spain, Swedish</strong></em>). Metadata information about the tweets, such as <strong>Geo information (place name, coordinates, country code)</strong> are included. <strong>MGKB</strong> contains <strong>sentiments, offensive and hate speeches, topics, hashtags, user mentions</strong> in RDF format. The schema of <strong>MGKB</strong> is an extension of TweetsKB for migration related information. Moreover, to associate and represent the potential economic and social factors driving the migration flows, the data from Eurostat and FIBO ontology was used. To represent multilinguality, the CIDOC Conceptual Reference Model (CIDOC-CRM) is used. The extracted economic indicators, i.e., GDP Growth Rate, Total Unemployment Rate, Youth Unemployment Rate, Long-term Unemployment Rate and Income per househould, are connected with each tweet in RDF using geographical and temporal dimensions. For this version, the Multilingual MGKB is delivered separated by year. The extracted topic words are also published. Code: https://github.com/migrationsKB/MRL Please contact Yiyi Chen (yiyi.chen@partner.kit.edu) for pretrained models (Sentiment analysis/hate speech detection/ETM) if necessary.
DOI: 10.5281/zenodo.5918507
title: Multilingual MigrationsKB: A Mulitlingual Knowledge Base of Migration related annotated Tweets

description: <strong>Multilingual MigrationskB (MGKB) </strong>is a mulitlingual extended version of English MGKB. The tweets geotagged with Geo location from 32 European Countries (<em><strong>Austria, Belgium, Bulgaria, Croatia, Cyprus, Czech, Denmark, Estonia, Finland, France, Germany, Greece, Hungary, Ireland, Italy, Latvia, Lithuania, Luxembourg, Malta, Netherlands, Poland, Portugal, Romania, Slovakia, Slovenia, Spain, Sweden, Iceland, Liechtenstein, Norway, Switzerland, the United Kingdom</strong></em>) are extracted and filtered by 11 languages (<em><strong>English, French, Finnish, German, Greek, Dutch, Hungarian, Italian, Polish, Spain, Swedish</strong></em>). Metadata information about the tweets, such as <strong>Geo information (place name, coordinates, country code)</strong> are included. <strong>MGKB</strong> contains <strong>sentiments, offensive and hate speeches, topics, hashtags, user mentions</strong> in RDF format. The schema of <strong>MGKB</strong> is an extension of TweetsKB for migration related information. Moreover, to associate and represent the potential economic and social factors driving the migration flows, the data from Eurostat and FIBO ontology was used. To represent multilinguality, the CIDOC Conceptual Reference Model (CIDOC-CRM) is used. The extracted economic indicators, i.e., GDP Growth Rate, Total Unemployment Rate, Youth Unemployment Rate, Long-term Unemployment Rate and Income per househould, are connected with each tweet in RDF using geographical and temporal dimensions. For this version, the Multilingual MGKB is delivered separated by year. The extracted topic words are also published. Code: https://github.com/migrationsKB/MRL Please contact Yiyi Chen (yiyi.chen@partner.kit.edu) for pretrained models (Sentiment analysis/hate speech detection/ETM) if necessary.
DOI: 10.6084/m9.figshare.19091771
title: Alzheimer's disease and Schizophrenia

description: Dataset from the paper "EEG functional connectivity and deep learning for automatic diagnosis of brain disorders: Alzheimer's disease and schizophrenia".<br>Schizophrenia dataset also available in: http://brain.bio.msu.ru/eeg_schizophrenia.htm<br>
DOI: 10.6084/m9.figshare.19091768
title: Supporting information for paper entitled "Holocene Tephrostratigraphy in the East Sea/Japan Sea: Implications for Eruptive History of Ulleungdo Volcano and Potential for Hemispheric Synchronisation of Sedimentary Archives" published in JGR-Solid Earth

description: These files are supporting information for paper entitled "Holocene Tephrostratigraphy in the East Sea/Japan Sea: Implications for Eruptive History of Ulleungdo Volcano and Potential for Hemispheric Synchronisation of Sedimentary Archives" published in JGR-Solid Earth. The supporting information includes the major and minor element compositions of individual glass shards of tephra layers identified in the 13PT-P4 Holocene section, and the glass standards analyzed alongside the glass shards.
DOI: 10.6084/m9.figshare.19091768.v2
title: Supporting information for paper entitled "Holocene Tephrostratigraphy in the East Sea/Japan Sea: Implications for Eruptive History of Ulleungdo Volcano and Potential for Hemispheric Synchronisation of Sedimentary Archives" published in JGR-Solid Earth

description: These files are supporting information for paper entitled "Holocene Tephrostratigraphy in the East Sea/Japan Sea: Implications for Eruptive History of Ulleungdo Volcano and Potential for Hemispheric Synchronisation of Sedimentary Archives" published in JGR-Solid Earth. The supporting information includes the major and minor element compositions of individual glass shards of tephra layers identified in the 13PT-P4 Holocene section, and the glass standards analyzed alongside the glass shards.
DOI: 10.6084/m9.figshare.19091768.v1
title: Supporting information

description: These files are supporting information for paper entitled "Holocene Tephrostratigraphy in the East Sea/Japan Sea: Implications for Eruptive History of Ulleungdo Volcano and Potential for Hemispheric Synchronisation of Sedimentary Archives" published in JGR-Solid Earth. The supporting information includes the major and minor element compositions of individual glass shards of tephra layers identified in the 13PT-P4 Holocene section, and the glass standards analyzed alongside the glass shards.
DOI: 10.5519/qd.lakq1s9x
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.13323071
title: East Asian summer monsoon evolution recorded by the middle Miocene pelagic reddish clay, South China Sea

description: This page contains original data of our study conducted to theEast Asian summer monsoon evolution using mineralogical and stratigraphic data of the pelagic reddish clay recovred at IODP Site U1433 in the central South China Sea.<br>
DOI: 10.5519/qd.ee1y2odu
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5281/zenodo.5918542
title: Sci-Hub download log 2011-2013

description: The included file ancient.sci-hub.stats.tab contains raw unprocessed PDF download log from Sci-Hub starting from 22 September 2011 and ending on 14 October 2013. Statistics from 14 October to 18 Jan 2014 were not recorded for technical reasons. Statistics before 22 September were not collected. Columns in the data file: Timestamp (yyyy-MM-dd HH:mm:ss) DOI URL IP address User identifier Country originally published at:<br> https://web.archive.org/web/20200702074701/https://twitter.com/Sci_Hub/status/1221827163781058562
DOI: 10.5281/zenodo.5918541
title: Sci-Hub download log 2011-2013

description: The included file ancient.sci-hub.stats.tab contains raw unprocessed PDF download log from Sci-Hub starting from 22 September 2011 and ending on 14 October 2013. Statistics from 14 October to 18 Jan 2014 were not recorded for technical reasons. Statistics before 22 September were not collected. Columns in the data file: Timestamp (yyyy-MM-dd HH:mm:ss) DOI URL IP address User identifier Country originally published at:<br> https://web.archive.org/web/20200702074701/https://twitter.com/Sci_Hub/status/1221827163781058562
DOI: 10.6084/m9.figshare.19091828
title: System data

description: system data
DOI: 10.6084/m9.figshare.19091828.v1
title: System data

description: system data
DOI: 10.5281/zenodo.5799710
title: Dataset for configurational entropy of a finite number of dumbbells close to a wall

description: <strong>Introduction:</strong> Dataset from numerical simulations to quantify the reduction in configurational entropy of dumbbells due to the presence of a wall, as developed and described in detail in the paper Markus Hütter: Configurational entropy of a finite number of dumbbells close to a wall. Eur. Phys. J. E, 45(1): 6 (19 pages), 2022. DOI: 10.1140/epje/s10189-022-00160-y WWW: https://doi.org/10.1140/epje/s10189-022-00160-y which should be cited whenever this dataset is used. The data compiled here is the basis for figures 5, 6, and 9 in that paper. <strong>Format</strong>: The files are provided in plain-text format (ascii). <strong>Filenames</strong>: The nomenclature for the filenames follows the following scheme: data-normal-Lone{L1}-Ltwo{L2}-N{N}-{method}-{timestamp}.txt where (see the original paper for details) {L1} and {L2} specify the confining slab, {N} denotes the number of dumbbells, and {method} is either "SPLIT" (for the data presented in figures 5 and 6) or "WangLandau-MERGED" (for the data presented in figure 9). <strong>File content</strong>: Each datafile contains 8 headerlines, in which the values of L1, L2, and N are repeated, and furthermore the following quantities are specified: nsteps is the total number of steps for the random sampling; clow = (4*L1^2)/N; cupp = 4*L2^2. After these headerlines, the data is presented in tab-delimited columns, as<br> follows for the "SPLIT"-files: column 1: conformation value (mid-bin position) column 2: number of successful placings in that bin (i.e., compatible with wall confinement) column 3: number of attempted placings in that bin column 4: (not used) (where the ratio of column 2 to column 3 gives the partition coefficient), whereas for the "WangLandau-MERGED"-files the columns represent the following: column 1: conformation value (mid-bin position) column 2: natural logarithm of the partition coefficient Details are explained in the paper mentioned above.