cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16953434
title: Insecticide resistance and species diversity in Anopheles gambiae s.l. in Côte d'Ivoire

description: This dataset accompanies the study “Insecticide resistance and species diversity in Anopheles gambiae s.l. in Côte d’Ivoire.” The study investigated insecticide resistance phenotypes, target-site mutations, and species distribution in malaria vectors collected across three ecological zones (savannah, pre-forest, and forest) in Côte d’Ivoire between July and October 2020.

Mosquito larvae and adults were sampled and analyzed using WHO susceptibility bioassays with pyrethroids (deltamethrin, permethrin) and an organophosphate (pirimiphos-methyl), complemented by synergist assays with piperonyl butoxide (PBO) and resistance intensity assays at 5x and 10x diagnostic doses. Molecular analyses included PCR-based species identification and genotyping for Kdr L1014F and Ace-1R G119S mutations.

The dataset provides raw and processed data on:





Species composition across ecological areas,




Mortality outcomes from bioassays,




Resistance intensity and synergist effects,




Allelic frequencies of resistance-associated mutations,




GPS coordinates of mosquito sampling sites across study areas.



These data support evidence of significant ecological variation in both vector species distribution and resistance mechanisms, with implications for malaria control strategies in Côte d’Ivoire.Funding: This work was supported by a grant awarded to the Institut Pierre Richet / Institut National de Santé Publique, Côte d’Ivoire, from the Bill & Melinda Gates Foundation (OPP1210335) through the Pan African Mosquito Control Association (PAMCA)
DOI: 10.15468/dl.44y5u9
title: Occurrence Download

description: A dataset containing 11125 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cynosurus coeruleus, Cynosurus rupestris, Cynosurus rupestris, Cynosurus sesleria, Diptychum caeruleum, Sesleria albicans, Sesleria albicans, Sesleria albicans albicans, Sesleria arduinii, Sesleria arduinii, Sesleria arduinoi, Sesleria arduinoi, Sesleria barcensis, Sesleria barcensis subscabrida, Sesleria caerulea chlorantha, Sesleria caerulea cylindrica, Sesleria caerulea micrantha, Sesleria caerulea ratzeburgii, Sesleria caerulea remotiflora, Sesleria caerulea scabriuscula, Sesleria caerulea caerulea, Sesleria caerulea elegantissima, Sesleria caerulea varia, Sesleria caerulea varia, Sesleria caerulea alba, Sesleria caerulea albicans, Sesleria caerulea calcaria, Sesleria caerulea elegantissima, Sesleria caerulea flavescens, Sesleria caerulea mutica, Sesleria caerulea pallida, Sesleria calcaria, Sesleria calcaria, Sesleria calcaria aristata, Sesleria calcaria humilis, Sesleria calcaria caerulea, Sesleria calcaria elongata, Sesleria calcaria luteoalba, Sesleria coerulans chlorantha, Sesleria coerulans micrantha, Sesleria coerulea, Sesleria cristata, Sesleria elegantissima, Sesleria uliginosa chlorantha, Sesleria uliginosa cylindrica, Sesleria uliginosa micrantha, Sesleria uliginosa remotiflora, Sesleria uliginosa subscabrida, Sesleria uliginosa neifficii, Sesleria uliginosa rohlenae)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 11125 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004787-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z8za7y
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Abactochromis labrosus, Acanthocleithron chapini, Acanthopagrus berda, Acapoeta tanganicae, Acentrogobius audax, Acentrogobius nebulosus, Acentrogobius therezieni, Acipenser sturio, Afronandus sheljuzhkoi, Afronemacheilus abyssinicus, Agonostomus catalai, Agonostomus telfairii, Alburnus alburnus, Alcolapia alcalica, Alcolapia grahami, Alcolapia latilabris, Alcolapia ndalalani, Alestes ansorgii, Alestes baremoze, Alestes bouboni, Brycinus nurse, Alestes dentex, Alestes liebrechtsii, Alestes macrophthalmus, Alestes stuhlmannii, Alestopetersius bifasciatus, Alestopetersius brichardi, Alestopetersius caudalis, Alestopetersius compressus, Alestopetersius hilgendorfi, Alestopetersius leopoldianus, Alestopetersius nigropterus, Alestopetersius smykalai, Alestopetersius tumbensis, Allenbatrachus meridionalis, Alosa agone, Alosa algeriensis, Alosa alosa, Alosa fallax, Alticorpus geoffreyi, Alticorpus macrocleithrum, Alticorpus mentale, Alticorpus peterdaviesi, Alticorpus profundicola, Altolamprologus calvus, Altolamprologus compressiceps, Neolamprologus fasciatus, Amarginops platus, Ambassis ambassis, Ambassis dussumieri, Ambassis fontoynonti, Ambassis gymnocephalus, Ambassis natalensis, Ambassis urotaenia, Amphilius atesuensis, Amphilius athiensis, Amphilius brevis, Amphilius caudosignatus, Amphilius cryptobullatus, Amphilius dimonikensis, Amphilius grandis, Amphilius jacksonii, Amphilius kakrimensis, Amphilius korupi, Amphilius lamani, Amphilius lampei, Amphilius laticaudatus, Amphilius lentiginosus, Amphilius longirostris, Amphilius lujani, Amphilius maesii, Amphilius mamonekenensis, Amphilius natalensis, Amphilius opisthophthalmus, Amphilius platychir, Amphilius pulcher, Amphilius rheophilus, Amphilius uranoscopus, Amphilius zairensis, Anaecypris punica, Pseudophoxinus punicus, Ancharius fuscus, Ancharius griseus, Andersonia leptura, Anguilla anguilla, Anguilla bengalensis, Anguilla bicolor, Anguilla marmorata, Anguilla mossambica, Anomalochromis thomasi, Aphanius apodus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((17.8386 -33.865,17.8437 -33.9401,19.1382 -33.9401,19.1382 -24.9401,14.1824 -24.9401,14.3369 -25.1139,14.4676 -26.4801,15.0951 -27.969,16.3584 -29.3533,16.8305 -30.5692,17.7504 -31.9517,17.8134 -32.2275,17.4732 -32.4288,17.3432 -32.826,17.8386 -33.865))"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004791-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.np7uh4
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Strabomantis necerus"
 ]
}

 The dataset includes 63 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004792-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9fyzgr
title: Occurrence Download

description: A dataset containing 215 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amphibalanus improvisus",
 "Country is Poland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 215 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004793-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.as2hvb
title: Occurrence Download

description: A dataset containing 192 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Frullania dusenii"
 ]
}

 The dataset includes 192 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004794-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8qcnk8
title: Occurrence Download

description: A dataset containing 2199412 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chlorophyta"
 ]
}

 The dataset includes 2199412 records from 2635 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004653-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c76knv
title: Occurrence Download

description: A dataset containing 387 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Baileychromis centropomoides, Barboides gracilis, Barbopsis devecchii, Barbus hondeensis, Enteromius manicensis, Barbus kamaia, Enteromius motebensis, Barbus microbarbis, Labeobarbus microbarbis, Barbus microterolepis, Labeobarbus microterolepis, Barbus myersi, Enteromius radiatus, Barbus paucisquamatus, Labeobarbus paucisquamatus, Barbus tetraspilus, Barilius shariensis, Raiamas shariensis, Bathyaethiops breuseghemi, Bathyaethiops caudomaculatus, Bathyaethiops greeni, Bathybagrus grandis, Bathybagrus graueri, Bathybagrus platycephalus, Bathybagrus sianenna, Bathybagrus stappersii, Bathybagrus tetranema, Bathybates fasciatus, Bathybates ferox, Bathybates graueri, Bathybates hornii, Bathybates leo, Bathybates minor, Bathybates vittatus, Bathyclarias atribranchus, Bathyclarias euryodon, Bathyclarias filicibarbis, Bathyclarias foveolatus, Bathyclarias longibarbis, Bathyclarias nyasensis, Bathyclarias rotundifrons, Bathyclarias worthingtoni, Bathygobius casamancus, Bathygobius fuscus, Bathygobius petrophilus, Bathygobius samberanoensis, Bathygobius soporator, Bedotia albomarginata, Bedotia alveyi, Bedotia geayi, Bedotia leucopteron, Bedotia longianalis, Bedotia madagascariensis, Bedotia marojejy, Bedotia masoala, Bedotia tricolor, Belonoglanis brieni, Belonoglanis tenuis, Belonophago hutsebouti, Belonophago tinanti, Benitochromis batesii, Benitochromis conjunctus, Benitochromis finleyi, Benitochromis nigrodorsalis, Benitochromis riomuniensis, Benitochromis ufermanni, Benthochromis melanoides, Benthochromis tricoti, Boleophthalmus boddarti, Bostrychus africanus, Boulengerochromis microlepis, Boulengeromyrus knoepffleri, Brachyalestes bimaculatus, Brachyalestes carolinae, Brachyalestes comptus, Brachyalestes fwaensis, Brachyalestes imberi, Brycinus imberi, Brachyalestes jacksonii, Brachyalestes kingsleyae, Brachyalestes nurse, Brachypetersius altus, Brachypetersius cadwaladeri, Brachypetersius gabonensis, Brachypetersius huloti, Brachypetersius pseudonummifer, Brevimyrus niger, Brienomyrus brachyistius)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((28.1382 -15.9401,19.1382 -15.9401,19.1382 -24.9401,28.1382 -24.9401,28.1382 -15.9401))"
 ]
}

 The dataset includes 387 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005975-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/9qgjb-ffk86
title: Coxiella_ Verocells_28dpi

description: Coxiella burnetii Nine Mile phase II clone 4 (NMIIC4) strain. Coxiella cells purified from infected Vero cells.
description: <strong>Tilt Series Date:</strong> 2017-10-19</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Coxiella burnetii</p>
<strong>Strain:</strong> Nine Mile phase II clone 4</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: -7.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Robert Heinzen. Data collected and processed by Debnath Ghosal and Mohammed Kaplan using Caltech tomography pipeline.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Refer to Heinzen lab.</p>
<strong>Sample Preparation:</strong> Freezing: 100% humidity, 4µl sample, Blot force 6, blot time 4 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-10-19-91/rawdata/</p>Cb_vero_20171019b0088.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-10-19-91/rawdata/Cb_vero_20171019b0088.mrc"
        > <i class="download icon"></i> Download </a></p>

        Cb_vero_20171019b0088_full.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-10-19-91/3dimage_89620/Cb_vero_20171019b0088_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/vhw61-h8j15
title: V. cholerae CF59 - ∆tcpB pMT5

description: Classical strain with ctxA deletion.Minor pilin tcpB knockout.Cell harbors pMT5 plasmid (inducible toxT).
description: <strong>Tilt Series Date:</strong> 2015-06-17</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O395-N1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain from Ronald K. Taylor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> ON cultures of Vibrio cholerae O395 NI pMT5 grown in LB pH 6.5, 1 mM IPTG and 100 ug/mL ampicilin</p>
<strong>Sample Preparation:</strong> Vitrobot (MK iv) settings: 100% humidity, 4µl sample, 10 mg/ml BSA treated gold. Blot force 6, blot time 2.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-06-17-28/rawdata/</p>20150617_AK08_10028.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-06-17-28/rawdata/20150617_AK08_10028.mrc"
        > <i class="download icon"></i> Download </a></p>

        20150617_AK08_10028_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-06-17-28/3dimage_58363/20150617_AK08_10028_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/qtqm3-10n35
title: V. cholerae JAS288 delta-tcpQ

description: Classical strain with ctxA deletionStrain name JAS288 (tcpQ gene knonkout)Cell harbors pMT5 plasmid (inducible toxT)
description: <strong>Tilt Series Date:</strong> 2016-09-14</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O395-N1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 145.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain from Gabriela Kovacikova</p>
<strong>Purification / Growth Conditions / Treatment:</strong> O/N cultures of Vibrio cholerae O395 N1 pMT5 grown in LB, 1 mM IPTG and 100 ug/mL ampicillin.</p>
<strong>Sample Preparation:</strong> Vitrobot (MK iv) settings: 100% humidity, 3.5µl sample, 10 mg/ml BSA treated gold. Blot force 6, blot time 3 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-09-14-5/rawdata/</p>20160914_YWC216_10005.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-09-14-5/rawdata/20160914_YWC216_10005.mrc"
        > <i class="download icon"></i> Download </a></p>

        20160914_YWC216_10005_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-09-14-5/3dimage_79063/20160914_YWC216_10005_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/278py-j3d22
title: V. cholerae RT4236 (stationary)

description: Classical strain with ctxA deletion.Cell harbors pMT5 plasmid (inducible toxT).
description: <strong>Tilt Series Date:</strong> 2015-05-11</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O395-N1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain from Ronald K. Taylor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Overnight cultures of Vibrio cholerae O395 NI pMT5 grown in LB pH 6.5, 1 mM IPTG and 100 ug/mL ampicilin</p>
<strong>Sample Preparation:</strong> Vitrobot (MK iv) settings: 100% humidity, 3µl sample, 10 mg/ml BSA treated gold. Blot force 6, blot time 2.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 finder.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-05-11-2/rawdata/</p>20150511_AK07_10002.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-05-11-2/rawdata/20150511_AK07_10002.mrc"
        > <i class="download icon"></i> Download </a></p>

        20150511_AK07_10002_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-05-11-2/3dimage_56360/20150511_AK07_10002_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/pnn2d-0mw55
title: Coxiella_ Verocells_28dpi

description: Coxiella burnetii Nine Mile phase II clone 4 (NMIIC4) strain. Coxiella cells purified from infected Vero cells.
description: <strong>Tilt Series Date:</strong> 2017-10-19</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Coxiella burnetii</p>
<strong>Strain:</strong> Nine Mile phase II clone 4</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: -7.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Robert Heinzen. Data collected and processed by Debnath Ghosal and Mohammed Kaplan using Caltech tomography pipeline.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Refer to Heinzen lab.</p>
<strong>Sample Preparation:</strong> Freezing: 100% humidity, 4µl sample, Blot force 6, blot time 4 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-10-19-52/rawdata/</p>Cb_vero_20171019b0049.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-10-19-52/rawdata/Cb_vero_20171019b0049.mrc"
        > <i class="download icon"></i> Download </a></p>

        Cb_vero_20171019b0049_full.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-10-19-52/3dimage_89573/Cb_vero_20171019b0049_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/g7bav-rt713
title: Saccharomyces cerevisiae - 6210

description: Raw data files of Saccharomyces cerevisiae - 6210
description: <strong>Tilt Series Date:</strong> 2017-05-17</p>
<strong>Data Taken By:</strong> Shrawan kumar Mageswaran</p>
<strong>Species / Specimen:</strong> Unspecified</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Obtained from Dr. Markus Babst, University of Utah</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown overnight in YPD, diluted to 0.2 OD in the morning and allowed to grow till OD ~0.6.</p>
<strong>Sample Preparation:</strong> Cells were diluted to an OD of 0.2-0.25 in YPD, applied to the grid, blotted from behind manually and plunge frozen in liquid ethane-propane mix. ~200 nm lamellae were FIB milled before imaging by TEM.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-05-17-12/rawdata/</p>TS6.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-05-17-12/rawdata/TS6.mrc"
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        TS6_4bin_DB.rec,  Reconstruction (Pixel Size 0.0 nm), 195.6 MB  
        
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