DOI: 10.25349/d97314
title: Using acoustic telemetry to quantify potential contaminant exposure of Vermilion Rockfish (Sebastes miniatus), Hornyhead Turbot (Pleuronichthys verticalis), and White Croaker (Genyonemus lineatus) at wastewater outfalls in southern California

description: Contaminant Exposure Models (CEMs) were developed to predict
 population-level tissue contaminant concentrations in fishes by pairing
 sediment-bound contaminant concentrations (DDTs, PCBs) and fine-scale
 acoustic telemetry data from a habitat- associated species (Vermilion
 Rockfish, Sebastes miniatus), nomadic flatfish species (Hornyhead Turbot,
 Pleuronichthys verticalis), and nomadic benthic/midwater schooling species
 (White Croaker, Genyonemus lineatus) tagged near wastewater outfalls in
 southern California. Model results were compared to contaminant
 concentrations in tissue samples. The CEMs developed require further
 refinement before implementation into management efforts but may act as
 steppingstones to help shift primary monitoring methods away from the
 regular field collection of fish for tissue contaminant analyses and
 towards behavioral modeling and habitat mapping. We also developed Kernel
 Density Estimates that can be used by managers immediately to identify
 regions that contribute most to contaminant exposure in species of
 concern. Prioritizing remediation efforts in these areas are likely to be
 most effective at improving fish health.
description: Acoustic telemetry was collected from several demersal species
 using two VEMCO Positioning System (VPS) acoustic receiver arrays deployed
 around wastewater outfalls in southern California, USA. Data were
 processed to include horizontal positioning error (HPE) values of 15 or
 less and data were visually assessed to remove tags that had fallen off or
 animals that have died due to tagging, predation, or fishing.
description: Please refer to the uploaded readme files. Raw
 datasets used for this study that are included in this entry
 are:  *_detections.csv files, where *
 indicates the species (vermilion_rockfish, white_croaker,
 hornyhead_turbot). These data were pre-processed to include only HPE
 values &lt; 15, and include only the individuals analyzed in the
 study. Please refer to the associated readme files for column names and
 descriptions.  Raw datasets used for this
 study that can be found elsewhere are:  
 white_croaker_contaminants.csv, for DDT contaminant
 concentrations in white croaker tissues, which can be accessed by the
 DIVER network. Explicit instructions on how to access the exact dataset
 used for these analyses can be found in the Supplemental Materials of the
 manuscript itself. DIVER. 2020. Web Application: Data
 Integration Visualization Exploration and Reporting Application, National
 Oceanic and Atmospheric Administration. Retrieved: March 20, 2021,
 from https://www.diver.orr.noaa.gov hornyhead_turbot_contaminants.csv, for DDT and PCB contaminant concentrations in hornyhead turbot liver and muscle tissues analyzed by the OCSD from the 2016-2017 and 2017-2018 sampling seasons. Means and ranges of contaminant concentrations can be found within the OCSD annual reports, referenced below. OCSD. (2017). Ocean Monitoring Annual Report: Year 2015-2016. Retrieved from https://www.ocsd.com/about-us/transparency/annual-reports/-folder-833 OCSD. (2018). Ocean Monitoring Annual Report: Year 2016-2017. Retrieved from https://www.ocsd.com/about-us/transparency/annual-reports/-folder-915 vermilion_rockfish_contaminants.csv, for DDT and PCB contaminant concentrations in vermilion rockfish muscle tissues analyzed by the OCSD from the 2016-2017 and 2017-2018 sampling seasons. Means and ranges of contaminant concentrations can be found within the OCSD annual reports, referenced below. OCSD. (2017). Ocean Monitoring Annual Report: Year 2015-2016. Retrieved from https://www.ocsd.com/about-us/transparency/annual-reports/-folder-833 OCSD. (2018). Ocean Monitoring Annual Report: Year 2016-2017. Retrieved from https://www.ocsd.com/about-us/transparency/annual-reports/-folder-915 total_ddt_pv.shp (and associated files), for DDT concentrations along the Palos Verdes Shelf, CA (USA), which was generated by the USEPA. Station data can be found within the report referenced below. ITSI-Gilbane, C.-S. (2013). Revised Final Data Report for the Fall 2009 Sediment Sampling Program. Prepared for the United States Environmental Protection Agency Region IX. EPA Contract No. EP-S9-08-03 Task Order No. 0029. Retrieved from https://semspub.epa.gov/work/09/100016664.pdf total_ddt_ocsd.shp (and associated files), for DDT concentrations along the OCSD outfall (CA, USA), which was generated from the mean of sediment-bound contaminant concentrations at 39 annual sampling sites from 2013-2016. Station data can be found within the OCSD annual reports, referenced below. OCSD. (2014). Ocean Monitoring Annual Report: Year 2012-2013. Retrieved from https://www.ocsd.com/about-us/transparency/annual-reports/-folder-687 OCSD. (2015). Ocean Monitoring Annual Report: Year 2013-2014. Retrieved from https://www.ocsd.com/about-us/transparency/annual-reports/-folder-748 OCSD. (2016). Ocean Monitoring Annual Report: Year 2014-2015. Retrieved from https://www.ocsd.com/about-us/transparency/annual-reports/-folder-792 OCSD. (2017). Ocean Monitoring Annual Report: Year 2015-2016. Retrieved from https://www.ocsd.com/about-us/transparency/annual-reports/-folder-833 OCSD. (2018). Ocean Monitoring Annual Report: Year 2016-2017. Retrieved from https://www.ocsd.com/about-us/transparency/annual-reports/-folder-915 total_pcb_ocsd.shp (and associated files), for PCB concentrations along the OCSD outfall (CA, USA), which was generated from the mean of sediment-bound contaminant concentrations at 39 annual sampling sites from 2013-2016. Station data can be found within the OCSD annual reports, referenced below. OCSD. (2014). Ocean Monitoring Annual Report: Year 2012-2013. Retrieved from https://www.ocsd.com/about-us/transparency/annual-reports/-folder-687 OCSD. (2015). Ocean Monitoring Annual Report: Year 2013-2014. Retrieved from https://www.ocsd.com/about-us/transparency/annual-reports/-folder-748 OCSD. (2016). Ocean Monitoring Annual Report: Year 2014-2015. Retrieved from https://www.ocsd.com/about-us/transparency/annual-reports/-folder-792 OCSD. (2017). Ocean Monitoring Annual Report: Year 2015-2016. Retrieved from https://www.ocsd.com/about-us/transparency/annual-reports/-folder-833 OCSD. (2018). Ocean Monitoring Annual Report: Year 2016-2017. Retrieved from https://www.ocsd.com/about-us/transparency/annual-reports/-folder-915 Processed datasets that are presented as the results of this study are the following:  scaled_*_states-**mpermin-***min_CEM_****.csv: final calculated contaminant exposure values for each individual in the study, where * indicates the species (VR [vermilion rockfish], HT [hornyhead turbot], WC [white croaker]). ** indicates the rate of movement threshold (3 or 1 [mpermin]), *** indicates the <em>crawl </em>interpolation rate (2 or 5 [min]), and **** indicates the contaminant (pcb or ddt). Please refer to the associated readme file (scaled_states_README) for column names and descriptions. *_**mpermin-***min_CEM_****.tif: final KDE estimates, weighted by underlying sediment-bound contaminant concentration, for each species,  where * indicates the species (VR [vermilion rockfish], HT [hornyhead turbot], WC [white croaker]). ** indicates the rate of movement threshold (3 or 1 [mpermin]), *** indicates the <em>crawl </em>interpolation rate (2 or 5 [min]), and **** indicates the contaminant (pcb or ddt). Please refer to the associated readme file (kde_weights_README) For all datasets, all missing values should be designated by NAs.  Please refer to the source code in the linked GitHub repository for the proper folder configuration and to re-run analyses, if desired.