cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.1159845
title: Dataset of 100 simulated root images, with different resolutions

description: All images were analysed with WinRhizo<sup>TM</sup> 2013, Regent method (Régent Instruments Inc 2013) and ImageJ (1.51j8, Schneider, Rasband, & Eliceiri, 2012) with the macro IJ_Rhizo (IJ_Rhizo_v0beta). We conducted batch analyses with the grey level thresholds set to automatic at all four resolutions (200, 400, 800 and 1200 DPI). We further analysed the images at 800 dpi and 1200 dpi with the threshold value manually set to 144. We considered this value suitable after visual inspection of 10 images at different thresholds using the threshold slider of WinRhizo<sup>TM</sup>. Since no debris was simulated, we used no automatic debris correction. For WinRhizo<sup>TM</sup>, the boundaries of diameter classes were set from 0.1 to 1.9 mm (with an increment of 0.1 mm).

The dataset contains:

- the root images in jpg format (images.zip)

- the root architecture data in rsml format (rsml.zip)

- the ground-truth value for each image (all_root_data_2D.csv)

- the ground-truth value for each root in each image (ground_truth_data_2D.csv)

- the estimation given by WinRhizo and IJ_Rhizo (all_analyses_2D.txt and all_analyses_fixed.txt)

- the different codes used for the analysis (*.R)

Dataset used in : Accuracy of image analysis tools for functional root traits: A comment on Delory et al., 2017 from Rose and Lobet (2019), Methods in Ecology and Evolution. 

The images in this dataset are a subset of the dataset here: https://doi.org/10.5281/zenodo.208214
DOI: 10.5281/zenodo.1159846
title: Dataset of 100 simulated root images, with different resolutions

description: All images were analysed with WinRhizo<sup>TM</sup> 2013, Regent method (Régent Instruments Inc 2013) and ImageJ (1.51j8, Schneider, Rasband, & Eliceiri, 2012) with the macro IJ_Rhizo (IJ_Rhizo_v0beta). We conducted batch analyses with the grey level thresholds set to automatic at all four resolutions (200, 400, 800 and 1200 DPI). We further analysed the images at 800 dpi and 1200 dpi with the threshold value manually set to 144. We considered this value suitable after visual inspection of 10 images at different thresholds using the threshold slider of WinRhizo<sup>TM</sup>. Since no debris was simulated, we used no automatic debris correction. For WinRhizo<sup>TM</sup>, the boundaries of diameter classes were set from 0.1 to 1.9 mm (with an increment of 0.1 mm).

The dataset contains:

- the root images in jpg format (images.zip)

- the root architecture data in rsml format (rsml.zip)

- the ground-truth value for each image (all_root_data_2D.csv)

- the ground-truth value for each root in each image (ground_truth_data_2D.csv)

- the estimation given by WinRhizo and IJ_Rhizo (all_analyses_2D.txt and all_analyses_fixed.txt)

- the different codes used for the analysis (*.R)

Dataset used in : Accuracy of image analysis tools for functional root traits: A comment on Delory et al., 2017 from Rose and Lobet (2019), Methods in Ecology and Evolution. 

The images in this dataset are a subset of the dataset here: https://doi.org/10.5281/zenodo.208214
DOI: 10.5281/zenodo.2547637
title: Antarctic surface mass balance with the regional climate model MAR (1979–2015)

description: Outputs of the regional climate model MAR v3.6.41 for Antarctica, resolution 35km + source code

===========================================

Cécile Agosta, 23 Jan 2019 

cecile.agosta@gmail.com

===========================================

Grid specifications are given in MAR-ant35km-grid.nc (projection : EPSG 3031).

* State variables are averages of daily means:

    TT &gt; temperature (°C)

    ZZ &gt; height above sea level (m)

    UU, VV &gt; x-wind and y-wind in the stereographic grid (m s-1)

    UV &gt; wind speed (m s-1)

State variables ending with z (e.g. UUz) are interpolated on fixed altitude levels above the ground.

State variables ending with p (e.g. UUp) are interpolated on fixed pressure levels.

* SMB components are summed: kg m-2 month-1 for montly files, kg m-2 year-1 for annual files, kg m-2 year-1 for clim files

    snf &gt; snowfall

    rnf &gt; rainfall

    rof &gt; run-off

    sbl &gt; sublimation/condensation

    smb = snf + rnf - sbl - rof

    mlt &gt; snowmelt

    rfz &gt; refreezing

If you use this data, please cite the final accepted version of this article:

Agosta C., Amory C., Kittel C., Orsi A., Favier V., Gallée H., van den Broeke M.R., Lenaerts J.T., van Wessem J.M., & Fettweis X. (in review, 2018). Estimation of the Antarctic surface mass balance using MAR (1979-2015) and identification of dominant processes. <em>The Cryosphere Discussions</em>, 1–22, doi:10.5194/tc-2018-76.

Please contact me if you need other outputs (variables/daily or hourly time steps)
description: {"references": ["Agosta C., Amory C., Kittel C., Orsi A., Favier V., Gall\u00e9e H., van den Broeke M.R., Lenaerts J.T., van Wessem J.M., & Fettweis X. (in review, 2018). Estimation of the Antarctic surface mass balance using MAR (1979-2015) and identification of dominant processes. The Cryosphere Discussions, 1\u201322, doi:10.5194/tc-2018-76."]}
DOI: 10.5281/zenodo.2547678
title: Data archive for  'Developmental history, energetic state and choice impulsivity in European starlings, Sturnus vulgaris'

description: Data and code for Dunn et al. 'Developmental history, energetic state and choice impulsivity in European starlings, Sturnus vulgaris'

 

The r script allows you to carry out all the analyses reported in the paper. Data from the experiment reported in the paper are 'databybird.csv'.

In the paper, we also compare the findings of the present experiment with findings from a study of risk preference in the same birds (Andrews et al. 2018), and two earlier studies of impulsivity in different birds (Bateson et al. 2015, Nettle et al. 2015) . For convenience, we have included the relevant data from those earlier studies here too, though those data are all already published in association with the primary paper on those experiments.

This version has a revised R script which tweaked some of the analyses in response to peer review.
DOI: 10.17183/s199203500
title: Levé S199203500

description: Océan Atlantique Nord- Secteur des Açores - Carottages D'Entrecasteaux (S199203500)
DOI: 10.17183/s199207400
title: Levé S199207400

description: Océan Atlantique Nord- Secteur des Açores - Carottages D'Entrecasteaux (S199000400)
DOI: 10.5061/dryad.gg7rt25/1
title: Raw data for Gryllus firmus quantitative genetics experiment on rearing density and behavior

description: Information on individuals included in the experiment, including: ID, dam, sire, rearing density, sex, mass, eclosion date, behavioral trial information.
DOI: 10.5281/zenodo.2547693
title: Fast Ion Transport in the Quasi-Single Helical Reversed-Field Pinch Raw Figure Data

description: The raw figure data is in a .xls or .xslx file. Each figure or sub-figure is denoted by sheet title in the .xls file. For 2D data plots, the data for the x-array, y-array, x-error, and y-error are provided. For 3D data plots, the data for x-array, y-array, and z-array are provided. Each dataset within a figure or sub-figure is appropriately labeled with an identifier as the column header.
description: Updated Figures 3 and 9.
DOI: 10.5281/zenodo.2547034
title: Dataset from: Honert and Zelik (2019) "Foot and shoe responsible for majority of soft tissue work in early stance of walking"

description: Raw and processed full body kinematics and kinetics for Honert and Zelik, 2019, "Foot and shoe responsible for majority of soft tissue work in early stance of walking" <em>Human Movement Science.</em>
DOI: 10.5281/zenodo.2547035
title: Dataset from: Honert and Zelik (2019) "Foot and shoe responsible for majority of soft tissue work in early stance of walking"

description: Raw and processed full body kinematics and kinetics for Honert and Zelik, 2019, "Foot and shoe responsible for majority of soft tissue work in early stance of walking" <em>Human Movement Science.</em>
DOI: 10.5281/zenodo.2547698
title: The effect of stride length on lower extremity joint kinetics at various gait speeds

description: Dataset linked with the manuscript "The effect of stride length on lower extremity joint kinetics at various gait speeds". Please see attached readme document for details
DOI: 10.5281/zenodo.2547699
title: The effect of stride length on lower extremity joint kinetics at various gait speeds

description: Dataset linked with the manuscript "The effect of stride length on lower extremity joint kinetics at various gait speeds". Please see attached readme document for details
DOI: 10.5281/zenodo.2231201
title: The hypothesis of a 'core' community receives poor support when confronted with simulated and empirical data

description: The field of community ecology is evolving rapidly as researchers are able to tie functions of systems to variation in taxa. In inferring processes, functions, and causal taxa, common practice is to assume a ‘core’ community can be defined. The core refers to a group of taxa found across samples, and statistically, is the discretization or categorization of continuous data. Assuming thresholds in abundance exist, and that a core microbiome exists, has the potential to be misleading. Rather, the existence of a core set of taxa should be treated as a hypothesis with support from empirical observations. An additional challenge is that there is no standard set of criteria for core membership. Consequently, comparison across studies is often impossible. We considered four common methods for defining a core and applied them to 25 simulations that cover a range of plausible communities and two published microbial data sets. Next, we used hierarchical clustering and bivariate plots of mean taxon abundance and variance to evaluate each method. Assignment of taxa to the core varied substantially among methods. Across simulations and published data sets, hierarchical clustering of taxa based on their abundance and prevalence (variation) offered no support for a core set of taxa. The categorization of taxa into sets corresponding to a core community and other taxa has the potential to be misleading. Given that the concept of core communities received poor support from data, the concept is questionable and should not be used without testing its validity in any particular context.
DOI: 10.5281/zenodo.2547764
title: Phrasal repetitions in early modern drama

description: This spreadsheet lists play pairs of the early modern period according to a variety of n-gram weighting measures in Martin Mueller’s corpus Shakespeare His Contemporaries
description: This data has been provided to DSCN to support the associated publication. Data has been uploaded by permission of the author.
DOI: 10.5281/zenodo.2547765
title: Phrasal repetitions in early modern drama

description: This spreadsheet lists play pairs of the early modern period according to a variety of n-gram weighting measures in Martin Mueller’s corpus Shakespeare His Contemporaries
description: This data has been provided to DSCN to support the associated publication. Data has been uploaded by permission of the author.
DOI: 10.5281/zenodo.2547778
title: Phrasal repetitions between Arden of Faversham and other early modern plays

description: This spreadsheet ranks Arden of Faversham against all other plays in Martin Mueller’s corpus Shakespeare His Contemporaries according to the number and type of shared phrases
description: This data has been provided to DSCN to support the associated publication. Data has been uploaded by permission of the author.
DOI: 10.5281/zenodo.2547779
title: Phrasal repetitions between Arden of Faversham and other early modern plays

description: This spreadsheet ranks Arden of Faversham against all other plays in Martin Mueller’s corpus Shakespeare His Contemporaries according to the number and type of shared phrases
description: This data has been provided to DSCN to support the associated publication. Data has been uploaded by permission of the author.
DOI: 10.17632/4rrttrdfvn.1
title: Data for: Sintering behavior, Microwave Dielectric Properties of Ca0.66Ti0.66Nd0.34Al0.34O3 ceramics revealed by Microstructure and Raman scattering

description: Thermal analyses with DSC of the CTNA calcined powders (green samples).
DOI: 10.17632/b4gpbss29f.1
title: Data for: Sintering behavior, Microwave Dielectric Properties of Ca0.66Ti0.66Nd0.34Al0.34O3 ceramics revealed by Microstructure and Raman scattering

description: Characteristic microstructures and grain size distribution of the CTNA ceramics produced after sintering at different temperatures
DOI: 10.17632/jz5dztst9f.1
title: Data for: Sintering behavior, Microwave Dielectric Properties of Ca0.66Ti0.66Nd0.34Al0.34O3 ceramics revealed by Microstructure and Raman scattering

description: Thermal analyses with DIL of the CTNA calcined powders (green samples).
DOI: 10.17632/yj7jjd6vfp.1
title: Data for: Latitudinal patterns and influencing climate factors of key plant traits in Chinese forest ecosystems

description: Plant traits in China
DOI: 10.5281/zenodo.2547757
title: Figure reproduction for "Accelerating small angle scattering experiments on anisotropic samples using kernel density estimation"

description: These datasets and a Jupyter notebook reproduce figures in a publication by Saito et al in Scientific Reports. The notebook also serves as a demo for kernel density estimation (smoothing) of 2D data using Python. Details are described in the notebook. If you have no idea about ipynb format, please see HTML version with your web browser instead. It contains exactly the same codes and results as ipynb version.
description: This work is supported by the Elements Strategy Initiative Center for Magnetic Materials (ESICMM) under the outsourcing project of the Ministry of Education, Culture, Sports, Science, Technology (MEXT) and the Magnetic Materials for High- Efficient Motors (MagHEM) project commissioned by the New Energy and Industrial Technology Development Organization (NEDO). K.S. has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 701647. H.H. is partly supported by JST CREST grant number JPMJCR1761.
DOI: 10.5281/zenodo.2547808
title: Shared unique tetragrams between early modern plays

description: This spreadsheet lists plays in Martin Mueller’s corpus Shakespeare His Contemporaries according to dislegomena consisting of at least four words i.e. tetragrams that occur in only two plays of the period.
description: This data has been provided to DSCN to support the associated publication. Data has been uploaded by permission of the author.
DOI: 10.5281/zenodo.2547809
title: Shared unique tetragrams between early modern plays

description: This spreadsheet lists plays in Martin Mueller’s corpus Shakespeare His Contemporaries according to dislegomena consisting of at least four words i.e. tetragrams that occur in only two plays of the period.
description: This data has been provided to DSCN to support the associated publication. Data has been uploaded by permission of the author.
DOI: 10.6073/pasta/346b58e9fabf023f6a72ac4448e0b826
title: Description of two hayed and two reference PIE LTER marsh sites used for vegetation studies in the haying project

description: A description of the two hayed and two reference areas used for vegetation studies in the haying project.  Includes transects within the hayed areas. The hayed and reference marsh sites are near Stackyard Rd. and Patmos Rd,  Rowley, Massachusetts
DOI: 10.17632/4y73kvkhrd.1
title: Data for: Aging effects of AC harmonics on lithium-ion cells

description: Cycling data and characterization data of Li-ion cells exposed to AC harmonics, as well as control cells not exposed to AC.
DOI: 10.17632/v2ytcvkmnw.1
title: Data for: Why So Many Published Sensitivity Analyses Are False. A Systematic Review of Sensitivity Analysis Practices

description: This is the data base containing the papers retained for the analysis, with the charts of results
DOI: 10.17632/jpjxch6cw7.1
title: Data for: Progressive Opening of the Northern Rio Grande Rift based on Fault Structure and Kinematics of the Tusas-Abiquiu Segment in North-Central New Mexico, U.S.

description: Field measurements on fault structure and kinematics of the Tusas-Abiquiu segment in the northern Rio Grande rift in New Mexico, U.S. Refer to a research article entitled "Progressive Opening of the Northern Rio Grande Rift based on Fault Structure and Kinematics of the Tusas-Abiquiu Segment in North-Central New Mexico, U.S." by Yiduo Liu et al. for details.
DOI: 10.17632/xttmgwsg2r.1
title: Data for: Fate modeling of 137Cs in surface soils and assessment of the long-term effects to population via the food chain

description: Supplementary dada
DOI: 10.26300/k6jj-ax23
title: Clinical Data for "Spermatozoal Large RNA Content is Associated with Semen Characteristics, Sociodemographic, and Lifestyle Factors"
DOI: 10.25739/6yts-xq12
title: Valluru 2019 Genetics

description: We are uploadind the mapped read (*.bam) and genotypic files (vcf) used in the publication: Leveraging mutational burden for complex trait prediction in sorghum (Valluru et al. 2019) Here, we sequenced 239 biomass Sorghum lines using the Illumina HiSeq 4000 (2x150). We used the Sentieon tools to call variants. Briefly, fastq files were aligned to the Sorghum bicolor reference genome version 3.1 (https://phytozome.jgi.doe.gov). PCR duplicates were removed, base quality was recalibrated based on a ‘high confidence SNPs’, and recalibrated files were processed through the Haplotype Caller (HC). The dataset contains 239 samples, corresponding to 229 unique accessions.
DOI: 10.23721/100/1503355
title: Understanding and Monitoring Embedded Web Scripts

description: ScriptInspector assists site administrators in understanding, monitoring, and restricting the behavior of third-party scripts embedded in their site. ScriptInspector is a modified browser that can intercept, record, and check third-party script accesses to critical resources against security policies. ;
DOI: 10.23721/100/1503356
title: FuzzSim: Black-box Fuzzing Simulator

description: Black-box mutational fuzzing is an effective, albeit simple, way to find bugs in software. Given a set of fuzzing configurations, which can be thought of as pairs of programs and seeds, FuzzSim evaluates various methods for scheduling the fuzzing of these pairs. The key feature of the system is that comprehensive data on fuzzing all pairs is obtained in advance, so that any scheduling algorithm's performance can be observed without duplication of fuzzing effort. Thus, we call FuzzSim a simulated scheduler for black-box fuzzing. The main purpose of FuzzSim is to determine the method of scheduling fuzzing on the input pairs that generates the most unique bugs in a fixed amount of time. ;
DOI: 10.23721/100/1503357
title: Website Fingerprinting

description: When browsing the web, many users would prefer to have privacy. Clients who wish to avoid behavorial marketing, tracking and surveillance could use an anonymizing proxy service such as Tor. Tor, however, is susceptible to website fingerprinting, wherein a local, passive adversary (such as your ISP or those who have access to your ISP's data) can identify a user's behavior according to patterns in their packet sequence. ; taow@cse.ust.hk
DOI: 10.23721/100/1503358
title: Measurement and Analysis of Private Key Sharing in the HTTPS Ecosystem

description: The semantics of online authentication in the web are rather straightforward: if Alice has a certificate binding Bob’s name to a public key, and if a remote entity can prove knowledge of Bob’s private key, then (barring key compromise) that remote entity must be Bob. However, in reality, many websites—and the majority of the most popular ones—are hosted at least in part by third parties such as Content Delivery Networks (CDNs) or web hosting providers. Put simply: administrators of websites who deal with (extremely) sensitive user data are giving their private keys to third parties. Importantly, this sharing of keys is undetectable by most users, and widely unknown even among researchers. In this paper, we perform a large-scale measurement study of key sharing in today’s web. We analyze the prevalence with which websites trust third-party hosting providers with their secret keys, as well as the impact that this trust has on responsible key management practices, such as revocation. Our results reveal that key sharing is extremely common, with a small handful of hosting providers having keys from the majority of the most popular websites. We also find that hosting providers often manage their customers’ keys, and that they tend to react more slowly yet more thoroughly to compromised or potentially compromised keys. ;
DOI: 10.5281/zenodo.2547994
title: Italian Lexical Simplification Benchmark

description: The corpus is a manually created benchmark to evaluate the performance of Italian lexical simplification systems. It contains 901 pairs of complex sentences and their simplified version at the lexical level (i.e. replacement of a difficult term or phrase with a simpler synonym). The dataset and a system using the benchmark are described in the paper "The impact of phrases on Italian lexical simplification"  https://zenodo.org/record/1048874
description: {"references": ["Sara Tonelli and Alessio Palmero Aprosio and Marco Mazzon, \"The Impact of Phrases on Italian Lexical Simplification\", In Proceedings of CLIC-it 2017, Rome."]}
DOI: 10.5281/zenodo.2547993
title: Italian Lexical Simplification Benchmark

description: The corpus is a manually created benchmark to evaluate the performance of Italian lexical simplification systems. It contains 901 pairs of complex sentences and their simplified version at the lexical level (i.e. replacement of a difficult term or phrase with a simpler synonym). The dataset and a system using the benchmark are described in the paper "The impact of phrases on Italian lexical simplification"  https://zenodo.org/record/1048874
description: {"references": ["Sara Tonelli and Alessio Palmero Aprosio and Marco Mazzon, \"The Impact of Phrases on Italian Lexical Simplification\", In Proceedings of CLIC-it 2017, Rome."]}
DOI: 10.5281/zenodo.1456199
title: Three principles of data science: predictability, computability, and stability (PCS)

description: This repository contains the data, codes, and PCS documentation described in: <em>Three principles of data science: predictability, computability, and stability (PCS)</em>.
DOI: 10.5281/zenodo.1456198
title: Three principles of data science: predictability, computability, and stability (PCS)

description: This repository contains the data, codes, and PCS documentation described in: <em>Three principles of data science: predictability, computability, and stability (PCS)</em>.
DOI: 10.5281/zenodo.2542570
title: Ortholog data from the tuatara genome project

description: This record contains orthology predictions based on the Maker gene annotation<br>
of the tuatara (Sphenodon punctatus) and a set of 25 other species, using the<br>
Ensembl methodology.

See http://doi.org/10.5281/zenodo.1489354 for the Maker annotation in GFF<br>
format.

The files all_trees.emf.gz and all_homologies.tsv.gz contain the phylogenetic<br>
trees (all_trees.emf.gz, in the EMF alignment format) and the derived pairwise<br>
orthologies and paralogies (all_homologies.tsv.gz, in tabular format).

From the phylogenetic trees, sets of 1-to-1 orthologues across all 26 species<br>
were extracted (pure_one2one_orthologies.txt).  Sets of orthologues that span<br>
all the species but include paralogues were reduced to 1 copy per species<br>
using gene order conservation and sequence similarity. This extra dataset is<br>
available in promoted_one2one_orthologies.txt

The main Ensembl entry point for tuatara is:<br>
  http://www.ensembl.org/Sphenodon_punctatus/

This work is supported by Ngatiwai iwi, Allan Wilson Centre, University of<br>
Otago, New Zealand Genomics Limited, Illumina, National eScience<br>
Infrastructure (NeSI NZ).