cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18157495
title: Metrological Identification of Deterministic Failure Regimes in Large Language Models Operating Under Critical Conditions

description: This portfolio presents a metrologically-grounded framework for evaluating Large Language Models, focusing on deterministic failure modes and critical operational regimes. It implements a three-level evaluation—Execution, Processing, and Dynamic-Systemic—using falsifiable, traceable, and reproducible metrics.

Applications include AI safety, robustness, bias detection, human-AI communication, and audit-ready compliance, establishing a rigorous standard for operational evaluation of AI systems.
DOI: 10.15156/bio/sh1185833.10fu
title: SH1185833.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1185834.10fu
title: SH1185834.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1185835.10fu
title: SH1185835.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.28310921
title: <b>Matlab program</b><b> </b><b>and </b><b>Supporting information for “Inclination-only fold test should be used in orogen</b><b>”</b>

description: These data are the Matlab program and the supporting information Table S1-7 for the manuscript “An updated Inclination-only fold test for paleomagnetic studies”.
DOI: 10.6084/m9.figshare.28310921.v1
title: <b>Matlab program</b><b> </b><b>and </b><b>Supporting information for “Inclination-only fold test should be used in orogen</b><b>”</b>

description: These data are the Matlab program and the supporting information Table S1-6 for the manuscript.
DOI: 10.5281/zenodo.14625471
title: Drivers of Willingness to Pay for Conservation in Southeast Asia: Nature Relatedness Over Visual Cues Among Japanese People

description: The accompanying Excel files comprise the relevant data of an online questionnaire survey.

 

Overview of questionnaire survey:

Survey period: February 10 (Wednesday) to February 16 (Tuesday), 2021

Respondents: 1,081

Distributors: 31,000

 

Rawdata.xlsx:

This file contains the source data answered by respondents.

 

Profile_Design_2020_D2225.xlsx:

This file contains the design of questionnaire survey.

 

 Details of questions (such as Q01) are described in the Appendix of the manuscript.

 

Other important variables:

ver : the version number of the choice type experiment ( 1 to 7 )

pat: Presence or absence of explanatory text for Q7 and Q9

1. There is a route explanation / There is a conservation group explanation

2. With route explanation / without conservation group explanation

3. No route explanation/protection group explanation available

4. No route explanation / No protection group explanation

ce : Attributes of choice experiments

1. FOR1: Transforming primary forests into protected areas

2. FOR2: Wildlife-friendly forestry

3. AGR1: Wetlands as protected areas

4. AGR2: Wildlife-friendly agriculture

5. F EE_S: Cost burden (unit: 1,000 yen)

6. STQ : status quo (evaluation of doing nothing)

duration: response time per page
DOI: 10.5281/zenodo.14625472
title: Drivers of Willingness to Pay for Conservation in Southeast Asia: Nature Relatedness Over Visual Cues Among Japanese People

description: The accompanying Excel files comprise the relevant data of an online questionnaire survey.

 

Overview of questionnaire survey:

Survey period: February 10 (Wednesday) to February 16 (Tuesday), 2021

Respondents: 1,081

Distributors: 31,000

 

Rawdata.xlsx:

This file contains the source data answered by respondents.

 

Profile_Design_2020_D2225.xlsx:

This file contains the design of questionnaire survey.

 

 Details of questions (such as Q01) are described in the Appendix of the manuscript.

 

Other important variables:

ver : the version number of the choice type experiment ( 1 to 7 )

pat: Presence or absence of explanatory text for Q7 and Q9

1. There is a route explanation / There is a conservation group explanation

2. With route explanation / without conservation group explanation

3. No route explanation/protection group explanation available

4. No route explanation / No protection group explanation

ce : Attributes of choice experiments

1. FOR1: Transforming primary forests into protected areas

2. FOR2: Wildlife-friendly forestry

3. AGR1: Wetlands as protected areas

4. AGR2: Wildlife-friendly agriculture

5. F EE_S: Cost burden (unit: 1,000 yen)

6. STQ : status quo (evaluation of doing nothing)

duration: response time per page
DOI: 10.5281/zenodo.11068432
title: Cell-free DNA Fragmentomics and Second Malignant Neoplasm Risk in Patients with PTEN Hamartoma Tumor Syndrome

description: Supplementary dataset for manuscript


Affiliations:


1Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic, Cleveland, OH 44195, USA


2Cleveland Clinic Lerner College of Medicine of Case Western Reserve University, Cleveland, OH 44195, USA


3Rose Ella Burkhardt Brain Tumor and Neuro-Oncology Center, Cleveland Clinic, Cleveland, OH 44195, USA


4Center for Personalized Genetic Healthcare, Medical Specialties Institute, Cleveland Clinic, Cleveland, OH 44195, USA


5Center for Immunotherapy and Precision Immuno-oncology, Cleveland Clinic, Cleveland, OH 44195, USA


6Taussig Cancer Institute, Cleveland Clinic, Cleveland, OH 44195, USA


7Department of Genetics and Genome Sciences, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA


8Germline High Risk Cancer Focus Group, Case Comprehensive Cancer Center, Case Western Reserve University, Cleveland, OH 44106, USA


Correspondence:


Charis Eng, MD, PhD (https://orcid.org/0000-0002-3693-5145)


Cleveland Clinic Genomic Medicine Institute


9500 Euclid Avenue NE50, Cleveland, OH 44195, USA


Tel: +1 (216) 444-3440, Fax: +1 (216) 636-0009, E-mail: engc@ccf.org
DOI: 10.5281/zenodo.15109495
title: Cell-free DNA Fragmentomics and Second Malignant Neoplasm Risk in Patients with PTEN Hamartoma Tumor Syndrome

description: Supplementary dataset for manuscript:

Cell-free DNA Fragmentomics and Second Malignant Neoplasm Risk in Patients with PTEN Hamartoma Tumor Syndrome

Affiliations:

1Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic, Cleveland, OH 44195, USA

2Cleveland Clinic Lerner College of Medicine of Case Western Reserve University, Cleveland, OH 44195, USA

3Rose Ella Burkhardt Brain Tumor and Neuro-Oncology Center, Cleveland Clinic, Cleveland, OH 44195, USA

4Center for Personalized Genetic Healthcare, Medical Specialties Institute, Cleveland Clinic, Cleveland, OH 44195, USA

5Center for Immunotherapy and Precision Immuno-oncology, Cleveland Clinic, Cleveland, OH 44195, USA

6Taussig Cancer Institute, Cleveland Clinic, Cleveland, OH 44195, USA

7Department of Genetics and Genome Sciences, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA

8Germline High Risk Cancer Focus Group, Case Comprehensive Cancer Center, Case Western Reserve University, Cleveland, OH 44106, USA

Correspondence:

Darren Liu, MD, MS (https://orcid.org/0000-0002-3693-5145)

Cleveland Clinic Genomic Medicine Institute

9500 Euclid Avenue, Cleveland, OH 44195, USA

E-mail: liud5@ccf.org 
description: Note: In previous versions of this respository, the file "cfxphts_fragfiles.tar" contained processed/filtered BED files generated from step 3 (03-filter-frags_gc.sh), rather than the intended output of step 2 (02-bamtobed.sh). This has been corrected in the current version, which now contains the appropriate BEDPE-formatted fragment files. 

This approach was done because majority of patients in our study did not consent to publicly share their raw genomic data. Thus, we provided de-identified fragment files to enable reproducibility while respeecting participant privacy. We apologize for any confusion or inconvience this may have caused.
DOI: 10.5281/zenodo.8422533
title: Cell-free DNA Fragmentomics and Second Malignant Neoplasm Risk in Patients with PTEN Hamartoma Tumor Syndrome

description: Supplementary dataset for manuscript:

Cell-free DNA Fragmentomics and Second Malignant Neoplasm Risk in Patients with PTEN Hamartoma Tumor Syndrome

Affiliations:

1Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic, Cleveland, OH 44195, USA

2Cleveland Clinic Lerner College of Medicine of Case Western Reserve University, Cleveland, OH 44195, USA

3Rose Ella Burkhardt Brain Tumor and Neuro-Oncology Center, Cleveland Clinic, Cleveland, OH 44195, USA

4Center for Personalized Genetic Healthcare, Medical Specialties Institute, Cleveland Clinic, Cleveland, OH 44195, USA

5Center for Immunotherapy and Precision Immuno-oncology, Cleveland Clinic, Cleveland, OH 44195, USA

6Taussig Cancer Institute, Cleveland Clinic, Cleveland, OH 44195, USA

7Department of Genetics and Genome Sciences, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA

8Germline High Risk Cancer Focus Group, Case Comprehensive Cancer Center, Case Western Reserve University, Cleveland, OH 44106, USA

Correspondence:

Darren Liu, MD, MS (https://orcid.org/0000-0002-3693-5145)

Cleveland Clinic Genomic Medicine Institute

9500 Euclid Avenue, Cleveland, OH 44195, USA

E-mail: liud5@ccf.org 
description: Note: In previous versions of this respository, the file "cfxphts_fragfiles.tar" contained processed/filtered BED files generated from step 3 (03-filter-frags_gc.sh), rather than the intended output of step 2 (02-bamtobed.sh). This has been corrected in the current version, which now contains the appropriate BEDPE-formatted fragment files. 

This approach was done because majority of patients in our study did not consent to publicly share their raw genomic data. Thus, we provided de-identified fragment files to enable reproducibility while respeecting participant privacy. We apologize for any confusion or inconvience this may have caused.
DOI: 10.5281/zenodo.8422534
title: Cell-free DNA Fragmentomics and Second Malignant Neoplasm Risk in Patients with PTEN Hamartoma Tumor Syndrome

description: Supplementary dataset for manuscript


Affiliations:


1Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic, Cleveland, OH 44195, USA


2Cleveland Clinic Lerner College of Medicine of Case Western Reserve University, Cleveland, OH 44195, USA


3Rose Ella Burkhardt Brain Tumor and Neuro-Oncology Center, Cleveland Clinic, Cleveland, OH 44195, USA


4Center for Personalized Genetic Healthcare, Medical Specialties Institute, Cleveland Clinic, Cleveland, OH 44195, USA


5Center for Immunotherapy and Precision Immuno-oncology, Cleveland Clinic, Cleveland, OH 44195, USA


6Taussig Cancer Institute, Cleveland Clinic, Cleveland, OH 44195, USA


7Department of Genetics and Genome Sciences, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA


8Germline High Risk Cancer Focus Group, Case Comprehensive Cancer Center, Case Western Reserve University, Cleveland, OH 44106, USA


Correspondence:


Charis Eng, MD, PhD (https://orcid.org/0000-0002-3693-5145)


Cleveland Clinic Genomic Medicine Institute


9500 Euclid Avenue NE50, Cleveland, OH 44195, USA


Tel: +1 (216) 444-3440, Fax: +1 (216) 636-0009, E-mail: engc@ccf.org
DOI: 10.15468/dl.tswkfv
title: Occurrence Download

description: A dataset containing 117109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aves)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-74.0105578879999 10.416284126,-73.08124304 10.416284126,-73.08124304 11.263474103,-74.0105578879999 11.263474103,-74.0105578879999 10.416284126))"
 ]
}

 The dataset includes 117109 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007312-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5g48vp
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dicranoloma brevisetum (Dozy & Molk.) Paris",
 "Year 1970-2025"
 ]
}

 The dataset includes 43 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007339-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eb5ufw
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "Locality is one of (buriticá, antioquia, co (6.694, -75.898))"
 ]
}

 The dataset includes 37 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007340-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yqn4xt
title: Occurrence Download

description: A dataset containing 2760 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dioscorea tokoro Makino"
 ]
}

 The dataset includes 2760 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007347-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.exatcz
title: Occurrence Download

description: A dataset containing 1276 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dioscorea tokoro Makino ex Miyabe"
 ]
}

 The dataset includes 1276 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007348-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6x6ade
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "Locality is one of (buriticá, antioquia, co (6.694, -75.898))"
 ]
}

 The dataset includes 37 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007351-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m5rhk8
title: Occurrence Download

description: A dataset containing 100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-76.56248 -0.62141,-70.30978 -0.62141,-70.30978 3.52712,-76.56248 3.52712,-76.56248 -0.62141))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anartia jatrophae (Linnaeus, 1763)"
 ]
}

 The dataset includes 100 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007353-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hjqtz4
title: Occurrence Download

description: A dataset containing 2040 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-100.88087 20.77577,-100.77862 20.77577,-100.77862 20.83035,-100.88087 20.83035,-100.88087 20.77577))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2040 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007360-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9dtw4h
title: Occurrence Download

description: A dataset containing 240 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Smilisca dentata (Smith, 1957)"
 ]
}

 The dataset includes 240 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007371-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.972101
title: Dissolved REY concentrations in coastal seawater during RV METEOR cruise M147

description: The dataset contains the concentrations of rare earth elements (REEs) in coastal surface seawater, the Caeté River, intertidal creek seawater, porewaters, and the Fe-Mn oxyhydroxide fraction of sediments in combination with the isotope compositions of Nd and Hf of coastal seawater, porewater and coastal sediment. Coastal seawater and sediment samples were obtained in April–May 2018 during RV Meteor cruise M147, which was official process study Gapr11 of the international GEOTRACES program.
DOI: 10.1594/pangaea.972103
title: Dissolved REY concentrations in Caeté River, intertidal creek water and porewater

description: The dataset contains the concentrations of rare earth elements (REEs) in coastal surface seawater, the Caeté River, intertidal creek seawater, porewaters, and the Fe-Mn oxyhydroxide fraction of sediments in combination with the isotope compositions of Nd and Hf of coastal seawater, porewater and coastal sediment. Coastal seawater and sediment samples were obtained in April–May 2018 during RV Meteor cruise M147, which was official process study Gapr11 of the international GEOTRACES program.
DOI: 10.1594/pangaea.972105
title: Ce, Gd and Eu anomalies (Ce/Ce*, Gd/Gd*, Eu/Eu*) in Caeté River and intertidal creek water

description: The dataset contains the concentrations of rare earth elements (REEs) in coastal surface seawater, the Caeté River, intertidal creek seawater, porewaters, and the Fe-Mn oxyhydroxide fraction of sediments in combination with the isotope compositions of Nd and Hf of coastal seawater, porewater and coastal sediment. Coastal seawater and sediment samples were obtained in April–May 2018 during RV Meteor cruise M147, which was official process study Gapr11 of the international GEOTRACES program.
DOI: 10.1594/pangaea.972106
title: Particulate REY concentrations in coastal sediment during RV METEOR cruise M147

description: The dataset contains the concentrations of rare earth elements (REEs) in coastal surface seawater, the Caeté River, intertidal creek seawater, porewaters, and the Fe-Mn oxyhydroxide fraction of sediments in combination with the isotope compositions of Nd and Hf of coastal seawater, porewater and coastal sediment. Coastal seawater and sediment samples were obtained in April–May 2018 during RV Meteor cruise M147, which was official process study Gapr11 of the international GEOTRACES program.