cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1379803.v2
title: GigaDB schema update to accommodate the growing variety of data.

description: GigaScience (http://www.gigasciencejournal.com) is an online, open-access journal that includes, as part of its publishing activities, the database GigaDB (http://www.gigadb.org). GigaScience is co-published in collaboration between BGI and BioMed Central, to meet the needs of a new generation of biological and biomedical research as it enters the era of “big-data.” The journal’s scope covers studies from the entire spectrum of the life sciences that produce and use large-scale data as the center of their work. Data from these articles are hosted in GigaDB, from where they can be cited to provide a direct link between the study and the data supporting it, as well as access to relevant tools for reproducing or reusing these data. Due to the scope of GigaScience, GigaDB needs to host a wider variety of data type than most biological databases. In order to make this possible, we have created and launched a new version of GigaDB that now uses a fully extensible database schema capable of handling this variety of data types and standards. The schema has 3 main areas, centered around these tables: Dataset Sample Data/File These are roughly analogous to those used by other common systems for submitting /curating biological data, including the SRA (http://www.ebi.ac.uk/ena/submit/metadata-model), and the ISA infrastructure (http://isatab.sourceforge.net/format.html). The dataset part includes tables to store information about the overall study design, the authors and funding bodies. It also acts as a holder to link together all the samples and data associated with it, as well as providing links to external sources. The Sample area of the schema plays host to the sample metadata and sample relationships, including their relationship to particular data files. Here we present the schema, and in an poster we show how it is implemented for metadata capture in our Submission Wizard.
DOI: 10.6084/m9.figshare.1379846.v1
title: University of Southampton APCs 2014-15 (Aug-Mar)

description: This spreadsheet contains details of article processing charges (APCs) paid by the University of Southampton during the period 1 August 2014 to 31 March 2015. The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/) and has been released with permission of the University of Southampton Library.
DOI: 10.6084/m9.figshare.1379783.v1
title: Gaussian Job Archive for C6H6Br6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1379784.v1
title: Gaussian Job Archive for C6H6Br6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1379803.v1
title: GigaDB schema update to accommodate the growing variety of data.

description: GigaScience (http://www.gigasciencejournal.com) is an online, open-access journal that includes, as part of its publishing activities, the database GigaDB (http://www.gigadb.org). GigaScience is co-published in collaboration between BGI and BioMed Central, to meet the needs of a new generation of biological and biomedical research as it enters the era of “big-data.” The journal’s scope covers studies from the entire spectrum of the life sciences that produce and use large-scale data as the center of their work. Data from these articles are hosted in GigaDB, from where they can be cited to provide a direct link between the study and the data supporting it, as well as access to relevant tools for reproducing or reusing these data. Due to the scope of GigaScience, GigaDB needs to host a wider variety of data type than most biological databases. In order to make this possible, we have created and launched a new version of GigaDB that now uses a fully extensible database schema capable of handling this variety of data types and standards. The schema has 3 main areas, centered around these tables: Dataset Sample Data/File These are roughly analogous to those used by other common systems for submitting /curating biological data, including the SRA (http://www.ebi.ac.uk/ena/submit/metadata-model), and the ISA infrastructure (http://isatab.sourceforge.net/format.html). The dataset part includes tables to store information about the overall study design, the authors and funding bodies. It also acts as a holder to link together all the samples and data associated with it, as well as providing links to external sources. The Sample area of the schema plays host to the sample metadata and sample relationships, including their relationship to particular data files. Here we present the schema, and in an poster we show how it is implemented for metadata capture in our Submission Wizard.
DOI: 10.6084/m9.figshare.1379060
title: Coordinate representations for interference reduction in motor learning

description: - 'mpe.csv' MPE data for all subjects (columns) and all trials (rows). NaN means that the trial is invalid as it is a force channel trial - 'fcom.csv' Force compensation data for all subjects (columns) and all trials (rows). NaN means that the trial is invalid as it is not a force channel trial - 'order.csv' The order of force field conditions for each subject. For each subject, the experiment (total 1080 trials) consists of a series of 3 different conditions (360 trials each), which are labelled as 1:Cartesian, 2:joint angles, and 3:hand orientation respectively. The order of subject matches to the colum order of 'mpe.csv' and 'fcom.csv'.
DOI: 10.6084/m9.figshare.1379059
title: cardiac ct data_15sets

description: The cardiac data was acquired with a dual source CT scanner(Siemens Somatom Definition, Germany). Each patient was scanned at twenty-one time phases.
DOI: 10.6084/m9.figshare.1379057
title: Force field order of Yeo et al "Coordinate representations for interference reduction in motor learning"

description: The order of force field conditions for each subject. For each subject, the experiment (total 1080 trials) consists of a series of 3 different conditions (360 trials each), which are labelled as 1:Cartesian, 2:joint angles, and 3:hand orientation respectively. The order of subject matches to the colum order of 'mpe.csv' and 'fcom.csv'.
DOI: 10.6084/m9.figshare.1379052
title: Census Data for Block groups in TX, CA,MD, DC, FL,OR,VA & NJ

description: This is block groups level data for 1990 and 2010 census downloaded from simply map. The boundaries have been normalized. Data included: Housing, Transportation, Income, Education, , Race, Place of Birth, Residency
DOI: 10.6084/m9.figshare.1379053
title: MPE data of Yeo et al "Coordinate representations for interference reduction in motor learning"

description: MPE data for all subjects (columns) and all trials (rows). N/A means that the trial is invalid as it is a force channel trial
DOI: 10.6084/m9.figshare.1379060.v2
title: Coordinate representations for interference reduction in motor learning

description: - 'mpe.csv' MPE data for all subjects (columns) and all trials (rows). NaN means that the trial is invalid as it is a force channel trial - 'fcom.csv' Force compensation data for all subjects (columns) and all trials (rows). NaN means that the trial is invalid as it is not a force channel trial - 'order.csv' The order of force field conditions for each subject. For each subject, the experiment (total 1080 trials) consists of a series of 3 different conditions (360 trials each), which are labelled as 1:Cartesian, 2:joint angles, and 3:hand orientation respectively. The order of subject matches to the colum order of 'mpe.csv' and 'fcom.csv'.
DOI: 10.6084/m9.figshare.1379051
title: Force compensation data of Yeo et al "Coordinate representations for interference reduction in motor learning"

description: Force compensation data for all subjects (columns) and all trials (rows). N/A means that the trial is invalid as it is not a force channel trial
DOI: 10.6084/m9.figshare.1379052.v1
title: Census Data for Block groups in TX, CA,MD, DC, FL,OR,VA & NJ

description: This is block groups level data for 1990 and 2010 census downloaded from simply map. The boundaries have been normalized. Data included: Housing, Transportation, Income, Education, , Race, Place of Birth, Residency
DOI: 10.6084/m9.figshare.1379060.v1
title: Yeo et al "Coordinate representations for interference reduction in motor learning"

description: - 'mpe.csv' MPE data for all subjects (columns) and all trials (rows). N/A means that the trial is invalid as it is a force channel trial - 'fcom.csv' Force compensation data for all subjects (columns) and all trials (rows). N/A means that the trial is invalid as it is not a force channel trial - 'order.csv' The order of force field conditions for each subject. For each subject, the experiment (total 1080 trials) consists of a series of 3 different conditions (360 trials each), which are labelled as 1:Cartesian, 2:joint angles, and 3:hand orientation respectively. The order of subject matches to the colum order of 'mpe.csv' and 'fcom.csv'.
DOI: 10.6084/m9.figshare.1379057.v2
title: Force field order of Yeo et al "Coordinate representations for interference reduction in motor learning"

description: The order of force field conditions for each subject. For each subject, the experiment (total 1080 trials) consists of a series of 3 different conditions (360 trials each), which are labelled as 1:Cartesian, 2:joint angles, and 3:hand orientation respectively. The order of subject matches to the colum order of 'mpe.csv' and 'fcom.csv'.
DOI: 10.6084/m9.figshare.1379037
title: Intellectual Freedom-Social Justice 2014-04-10

description: Fileset for the presentation at the University of Illinois Symposium on LIS Education on 4/10/2014: "Intellectual Freedom is Not Social Justice: ALA Accreditation, Symbolic Capital, and LIS Curricula."
DOI: 10.6084/m9.figshare.1379051.v3
title: Force compensation data of Yeo et al "Coordinate representations for interference reduction in motor learning"

description: Force compensation data for all subjects (columns) and all trials (rows). N/A means that the trial is invalid as it is not a force channel trial
DOI: 10.6084/m9.figshare.1379053.v1
title: MPE data for all subjects and all trials

description: MPE data of Yeo et al "Coordinate representations for interference reduction in motor learning" Rows: trial Columns: subject N/A means that the trial is invalid as it is a force channel trial
DOI: 10.6084/m9.figshare.1379051.v2
title: force compensation data for all subjects and all trials

description: Force compensation data of Yeo et al "Coordinate representations for interference reduction in motor learning" Rows: trial Columns: subject N/A means that the trial is invalid as it is not a force channel trial
DOI: 10.6084/m9.figshare.1379057.v1
title: Force field order for each subject

description: The order of force field conditions for each subject (data used in Yeo et al "Coordinate representations for interference reduction in motor learning"). For each subject, the experiment (total 1080 trials) consists of a series of 3 different conditions (360 trials each), which are labelled as 1:Cartesian, 2:joint angles, and 3:hand orientation respectively. The order of subject matches to the colum order of 'mpe.csv' and 'fcom.csv'.
DOI: 10.6084/m9.figshare.1379037.v1
title: Intellectual Freedom-Social Justice 2014-04-10

description: Fileset for the presentation at the University of Illinois Symposium on LIS Education on 4/10/2014: "Intellectual Freedom is Not Social Justice: ALA Accreditation, Symbolic Capital, and LIS Curricula."
DOI: 10.6084/m9.figshare.1379036
title: metrics benchmarking bibcodes

description: Bibcodes used for benchmarking of the metrics service. These are all highly cited records. This set has been constructed for "strain testing" of the service, i.e. how it deals with heavy computations and large amounts of data.
DOI: 10.6084/m9.figshare.1379053.v2
title: MPE data for all subjects and all trials

description: MPE data of Yeo et al "Coordinate representations for interference reduction in motor learning" Rows: trial Columns: subject N/A means that the trial is invalid as it is a force channel trial
DOI: 10.6084/m9.figshare.1378996
title: Diversity and Evolution of the Primate Skin: Primate Armpit L6 Abundances

description: This data is composed of relative abundances of 16S rRNA genes from 63 primate axilla samples rarefied to 1000 sequences at the L6 genus level classification.
DOI: 10.6084/m9.figshare.1379001
title: metrics service benchmarking

description: This set contains results from benchmarking various aspects of the ADS metrics micro service
DOI: 10.6084/m9.figshare.1379036.v1
title: metrics benchmarking bibcodes

description: Bibcodes used for benchmarking of the metrics service. These are all highly cited records. This set has been constructed for "strain testing" of the service, i.e. how it deals with heavy computations and large amounts of data.
DOI: 10.6084/m9.figshare.1379053.v3
title: MPE data for all subjects and all trials

description: MPE data of Yeo et al "Coordinate representations for interference reduction in motor learning" Rows: trial Columns: subject N/A means that the trial is invalid as it is a force channel trial
DOI: 10.6084/m9.figshare.1379053.v5
title: MPE data of Yeo et al "Coordinate representations for interference reduction in motor learning"

description: MPE data for all subjects (columns) and all trials (rows). N/A means that the trial is invalid as it is a force channel trial
DOI: 10.6084/m9.figshare.1378996.v2
title: Diversity and Evolution of the Primate Skin: Primate Armpit L6 Abundances

description: This data is composed of relative abundances of 16S rRNA genes from 63 primate axilla samples rarefied to 1000 sequences at the L6 genus level classification.
DOI: 10.6084/m9.figshare.1379001.v2
title: metrics service benchmarking

description: This set contains results from benchmarking various aspects of the ADS metrics micro service
DOI: 10.6084/m9.figshare.1379001.v1
title: metrics service benchmarking

description: This set contains results from benchmarking various aspects of the ADS metrics micro service
DOI: 10.6084/m9.figshare.1379053.v4
title: MPE data for all subjects and all trials

description: MPE data of Yeo et al "Coordinate representations for interference reduction in motor learning" Rows: trial Columns: subject N/A means that the trial is invalid as it is a force channel trial
DOI: 10.6084/m9.figshare.1378996.v1
title: PrimateArmpitL6Abundances

description: This data is composed of relative abundances of 16S rRNA genes from 63 primate axilla samples rarefied to 1000 sequences at the L6 genus level classification.
DOI: 10.6084/m9.figshare.1378951
title: Tctex1d2 associates with short-rib polydactyly syndrome proteins and is required for ciliogenesis

description: Short-rib polydactyly syndromes (SRPS) arise from mutations in genes involved in retrograde intraflagellar transport (IFT) and basal body homeostasis, which are critical for cilia assembly and function. Recently, mutations in <i>WDR34</i> or <i>WDR60</i> (candidate dynein intermediate chains) were identified in SRPS. We have identified and characterized Tctex1d2, which associates with Wdr34, Wdr60 and other dynein complex 1 and 2 subunits. Tctex1d2 and Wdr60 localize to the base of the cilium and their depletion causes defects in ciliogenesis. We propose that Tctex1d2 is a novel dynein light chain important for trafficking to the cilium and potentially retrograde IFT and is a new molecular link to understanding SRPS pathology.
DOI: 10.6084/m9.figshare.1378951.v2
title: Tctex1d2 associates with short-rib polydactyly syndrome proteins and is required for ciliogenesis

description: Short-rib polydactyly syndromes (SRPS) arise from mutations in genes involved in retrograde intraflagellar transport (IFT) and basal body homeostasis, which are critical for cilia assembly and function. Recently, mutations in <i>WDR34</i> or <i>WDR60</i> (candidate dynein intermediate chains) were identified in SRPS. We have identified and characterized Tctex1d2, which associates with Wdr34, Wdr60 and other dynein complex 1 and 2 subunits. Tctex1d2 and Wdr60 localize to the base of the cilium and their depletion causes defects in ciliogenesis. We propose that Tctex1d2 is a novel dynein light chain important for trafficking to the cilium and potentially retrograde IFT and is a new molecular link to understanding SRPS pathology.
DOI: 10.6084/m9.figshare.1378947
title: Promiscuous copulation attempts and discriminate pairing displays in male barn swallows as revealed by model presentation

description: The current knowledge of male mate preferences based on female ornamentation is quite limited. Few experimental studies have been conducted; therefore, even basic information, such as male mate preferences for copulation and pairing, is lacking. Here we studied male mate preferences in Japanese barn swallows <i>Hirundo rustica gutturalis</i>, a socially monogamous passerine with biparental care, using a model presentation experiment. We presented each unmated male with a control female model that had typical whitish ventral feathers of this subspecies or with a chestnut model that had chestnut ventral feathers, which are found in other subspecies such as <i>H. r. erythrogaster</i>, and compared male behaviour towards these models. The number of male copulation attempts did not significantly differ between treatments. In contrast, the number of male pairing displays was significantly different between treatments: males courted less often towards a chestnut model than towards a control model. These results demonstrate indiscriminate copulation attempts but discriminate pairing displays in male swallows, which is consistent with Trivers’ classic theory. We discuss the causes and consequences of the observed patterns.
DOI: 10.6084/m9.figshare.1378951.v1
title: Tctex1d2 associates with short-rib polydactyly syndrome proteins and is required for ciliogenesis

description: Short-rib polydactyly syndromes (SRPS) arise from mutations in genes involved in retrograde intraflagellar transport (IFT) and basal body homeostasis, which are critical for cilia assembly and function. Recently, mutations in <i>WDR34</i> or <i>WDR60</i> (candidate dynein intermediate chains) were identified in SRPS. We have identified and characterized Tctex1d2, which associates with Wdr34, Wdr60 and other dynein complex 1 and 2 subunits. Tctex1d2 and Wdr60 localize to the base of the cilium and their depletion causes defects in ciliogenesis. We propose that Tctex1d2 is a novel dynein light chain important for trafficking to the cilium and potentially retrograde IFT and is a new molecular link to understanding SRPS pathology.
DOI: 10.6084/m9.figshare.1378947.v1
title: Promiscuous copulation attempts and discriminate pairing displays in male barn swallows as revealed by model presentation

description: The current knowledge of male mate preferences based on female ornamentation is quite limited. Few experimental studies have been conducted; therefore, even basic information, such as male mate preferences for copulation and pairing, is lacking. Here we studied male mate preferences in Japanese barn swallows <i>Hirundo rustica gutturalis</i>, a socially monogamous passerine with biparental care, using a model presentation experiment. We presented each unmated male with a control female model that had typical whitish ventral feathers of this subspecies or with a chestnut model that had chestnut ventral feathers, which are found in other subspecies such as <i>H. r. erythrogaster</i>, and compared male behaviour towards these models. The number of male copulation attempts did not significantly differ between treatments. In contrast, the number of male pairing displays was significantly different between treatments: males courted less often towards a chestnut model than towards a control model. These results demonstrate indiscriminate copulation attempts but discriminate pairing displays in male swallows, which is consistent with Trivers’ classic theory. We discuss the causes and consequences of the observed patterns.
DOI: 10.6084/m9.figshare.1378939
title: RNA-mediated degradation of microRNAs: A widespread viral strategy?

description: Regulation of small RNAs by other non-coding RNAs is a ubiquitous feature of gene regulatory systems that can be exploited by viruses. Examples of this have been described in 3 different herpesviruses, where viral non-coding RNAs bind to highly abundant cellular (miRNAs), mediating their degradation: miR-27 is targeted by both murine cytomegalovirus and herpesvirus saimiri, while the miR-17 family is targeted by human cytomegalovirus. We review what is known about RNA-mediated regulation of miRNA stability and propose 3 potential roles that viral non-coding RNAs might assume to initiate the destruction of a miRNA, acting as “recruiters,” “localizers” or “exposers.” Whereas the miRNAs (miR-17 and miR-27) appear to be ancient and pre-date the common ancestor of all mammalian herpesviruses, comparative analyses of herpesvirus genomes indicate that the 3 known viral regulators of miRNA each evolved independently, and much more recently. Noting that the anti-viral activity of miRNAs might be countered by a variety of mechanisms, we propose that (i) there has been continual turnover of these mechanisms during herpesvirus evolution, and (ii) there may be many other, as yet undescribed, anti-miRNA activities encoded by other herpesviruses and indeed by viruses from other families.
DOI: 10.6084/m9.figshare.7611674
title: In-tube condensation data of R134a and R450A in a horizontal 4.7 mm ID tube

description: The attached data was collected at Oregon State University in the Thermal Energy Systems and Transport (TEST) Laboratory during flow condensation experiments for refrigerants R134a and R450A. The experiments were conducted in a horizontal circular copper tube with 4.7mm internal diameter. Water, flowing in the annulus, was used as the coolant. The local condensation heat transfer coefficients and the associated qualities for R-134 and R450A are presented at varying mass fluxes (100-2 s<sup>-1</sup>) and two different saturation conditions (T_dew ≈ 45 and 55<sup>o</sup>C) <br>The test section was divided into 7 segments. Exact length of each section is recorded in the attached file, and an attached figure shows visual representation of a segment. Water inlet and outlet temperature and the copper tube surface temperature are measured in each segment. The surface temperatures were measured at the center of each section using self-adhesive surface thermocouples. Using these measurements, local heat transfer coefficients and thermodynamic qualities were evaluated for each segment. This was accomplished by performing energy balances on the coolant side to determine the heat duties transferred in each section. <br>Summaries of the average measured values and the calculated variables are presented in the attached document. For more details regarding the experiments, results, and conclusions, please see cited references.