cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7101359.v1
title: Surgical management of astigmatism with toric intraocular lenses

description: Correction of corneal astigmatism is a key element of cataract surgery, since post-surgical residual astigmatism can compromise the patient's uncorrected visual acuity. Toric intraocular lenses (IOLs) compensate for corneal astigmatism at the time of surgery, correcting ocular astigmatism. They are a predictable treatment. However, accurate measurement of corneal astigmatism is mandatory for choosing the correct toric IOL power and for planning optimal alignment. When calculating the power of toric IOLs, it is important to consider anterior and posterior corneal astigmatism, along with the surgically induced astigmatism. Accurate toric lens alignment along the calculated meridian is also crucial to achieve effective astigmatism correction. There are several techniques to guide IOL alignment, including the traditional manual marking technique and automated systems based on anatomic and topographic landmarks. The aim of this review is to provide an overview on astigmatism management with toric IOLs, including relevant patient selection criteria, corneal astigmatism measurement, toric IOL power calculation, toric IOL alignment, clinical outcomes and complications.
DOI: 10.6084/m9.figshare.16625326.v1
title: Additional file 17 of Systematic analysis of the relationship between ovarian cancer prognosis and alternative splicing

description: Additional file 17: Table 17. Single factor independent analysis of ovarian cancer.The 95% confidence interval from HR.95L to HR.95H.P value less than 0.05 indicates that this factor is significant as an independent prognostic factor for ovarian cancer.
DOI: 10.6084/m9.figshare.16625335
title: Additional file 1 of Systematic analysis of the relationship between ovarian cancer prognosis and alternative splicing

description: Additional file 1: Table 1. Relationship between alternative splicing events and ovarian cancer after univariate Cox regression analysis.HR,hazard ratio,HR&gt;1 are high-risk events, HR&lt;1 are low-risk events.The 95% confidence interval from HR.95L to HR.95H.
DOI: 10.6084/m9.figshare.16625329
title: Additional file 18 of Systematic analysis of the relationship between ovarian cancer prognosis and alternative splicing

description: Additional file 18: Table 18. Multi-factor independent prognostic analysis of ovarian cancer.The 95% confidence interval from HR.95L to HR.95H.P value less than 0.05 indicates that this factor is significant as an independent prognostic factor for ovarian cancer.
DOI: 10.25386/genetics.24498637
title: Supplemental Material for Reiser et al., 2023

description: 1.MF_UNK_20230808.txt
All protein coding genes from the Araport11 genome release listed by AGI locus identifier that are either annotated to unknown GO molecular function or have no molecular function annotation at all
<br>
<br>
2.BP_UNK_20230808.txt
All protein coding genes from the Araport11 genome release listed by AGI locus identifier that are either annotated to unknown GO  biological process or have no biological process annotation at all
<br>
3.CC_UNK_20230808.txt
All protein coding genes from the Araport11 genome release listed by AGI locus identifier that are either annotated to unknown GO  cellular component or have no  cellular component annotation at all
<br>
<br>
4.MF_BP_CC_20230808.txt
<br>
All protein coding genes from the Araport11 genome release listed by AGI locus identifier that have ND or no annotations to GO molecular function, biological process and cellular component.
<br>
<br>
5.MF_BP_UNK_20230810.txt
<br>
All protein coding genes from the Araport11 genome release listed by AGI locus identifier that have ND or no annotations to GO molecular function and biological process.
<br>
6.AGIproteinNames_20230808.txt
All protein coding genes listed by AGI locus identifier from the Araport11 genome release
DOI: 10.6084/m9.figshare.7101392.v1
title: Experimental and numerical investigation on the dumbbell-shaped specimen of concrete-like materials under tension

description: Abstract Mortar is an important component of concrete. It is of great significance to obtain its tensile properties accurately. The structure heterogeneity of mortar specimens is high. Specimens are prone to fracture nearby interfaces between specimens and loading plates because of the inhomogenous stress distribution during the testing, which leads that effective tensile data can not be easily obtained. Therefore, through the improvement of specimen’s geometrical structure, the dumbbell specimen is designed for quasi-static direct tensile tests. Compared with the splitting test results, the quasi-static direct tensile testing of dumbbell specimens can be availably conducted to obtain the tensile strength. It also provides an effective approach to obtain the tensile parameters of mortar specimens. Moreover, numerical simulations on dumbbell specimens of mortar with different shapes are also conducted to explore the optimal geometrical structure in dynamic direct tensile tests.
DOI: 10.6084/m9.figshare.16625344
title: Additional file 22 of Systematic analysis of the relationship between ovarian cancer prognosis and alternative splicing

description: Additional file 22: Table 22. Results of splicing factors Kyoto Encyclopedia of Genes and Genomes enrichment analysis.Input number:The number of splicing factors involved in the pathway.Background number:Number of all genes involved in the pathway.
DOI: 10.6084/m9.figshare.16625350
title: Additional file 3 of Systematic analysis of the relationship between ovarian cancer prognosis and alternative splicing

description: Additional file 3: Table 3. Prognostic model of AA events in ovarian cancer.coef is the risk factor.
DOI: 10.6084/m9.figshare.16625353
title: Additional file 4 of Systematic analysis of the relationship between ovarian cancer prognosis and alternative splicing

description: Additional file 4: Table 4. Risk score of AA events in ovarian cancer patients.
DOI: 10.6084/m9.figshare.16625353.v1
title: Additional file 4 of Systematic analysis of the relationship between ovarian cancer prognosis and alternative splicing

description: Additional file 4: Table 4. Risk score of AA events in ovarian cancer patients.
DOI: 10.6084/m9.figshare.16625359.v1
title: Additional file 6 of Systematic analysis of the relationship between ovarian cancer prognosis and alternative splicing

description: Additional file 6: Table 6. Risk score of AD events in ovarian cancer patients.
DOI: 10.6084/m9.figshare.16625320
title: Additional file 15 of Systematic analysis of the relationship between ovarian cancer prognosis and alternative splicing

description: Additional file 15: Table 15. Prognostic model of RI events in ovarian cancer.coef is the risk factor.
DOI: 10.6084/m9.figshare.12057138
title: ESM dataset from Bacterial community richness shifts the balance between volatile organic compound-mediated microbe–pathogen and microbe–plant interactions

description: This file contains data-set of volatile organic compounds produced by twelve bacterial strains at different community richness levels
DOI: 10.6084/m9.figshare.12057138.v1
title: ESM dataset from Bacterial community richness shifts the balance between volatile organic compound-mediated microbe–pathogen and microbe–plant interactions

description: This file contains data-set of volatile organic compounds produced by twelve bacterial strains at different community richness levels
DOI: 10.6084/m9.figshare.24481222
title: Materials involved in the <i>Methanoperedens </i>ECEs paper

description: Genomes of <i>Methanoperedens </i>and associated ECEs, and other materials and information
DOI: 10.6084/m9.figshare.24481222.v1
title: Genomes involved in the <i>Methanoperedens </i>ECEs paper

description: Genomes of <i>Methanoperedens </i>and associated ECEs
DOI: 10.6084/m9.figshare.16692601
title: Viruses and MAGs in activated sludge

description: Viruses and MAGs in activated sludge
DOI: 10.6084/m9.figshare.16625267
title: Additional file 8 of The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation

description: Additional file 8: Data S8. FASTA file of predicted wheat miRNAs.
DOI: 10.6084/m9.figshare.16625270
title: Additional file 9 of The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation

description: Additional file 9: Table S9. Pgt sRNAs differential expression results and counts per million.
DOI: 10.6084/m9.figshare.11297588
title: Crystal structure and anti-liver cancer activity of two Zn(II) coordination polymers based on N-donor and O-donor co-ligands

description: Mixed ligand approach has been successfully applied to design coordination polymers with diversiform architectures. In this study, two novel mixed-ligand Zn(II)-based coordination polymers [Zn(bdc)(bib)](H<sub>2</sub>O)<sub>3</sub> (<b>1</b>, H<sub>2</sub>bdc = 1,4-dicarboxybenzene, bib = 1,3-bis(imidazol-1-yl)benzene) and [Zn(NH<sub>2</sub>-bdc)(bib)](H<sub>2</sub>O)<sub>2</sub> (<b>2</b>, NH<sub>2</sub>-H<sub>2</sub>bdc = 2-amino-1,4-dicarboxybenzene) have been successfully prepared based on zinc nitrate, N-containing ligand and linear carboxylate ligand at the same hydrothermal condition. The anti-viability of compounds <b>1</b> and <b>2</b> against SMMC-7721 liver cancer cells was assessed with CCK-8 detection kit. Besides, the cell apoptosis and ROS detection experiments were also performed to study the related mechanism about the anticancer activity of compounds <b>1</b> and <b>2</b>.
DOI: 10.6084/m9.figshare.11297588.v1
title: Crystal structure and anti-liver cancer activity of two Zn(II) coordination polymers based on N-donor and O-donor co-ligands

description: Mixed ligand approach has been successfully applied to design coordination polymers with diversiform architectures. In this study, two novel mixed-ligand Zn(II)-based coordination polymers [Zn(bdc)(bib)](H<sub>2</sub>O)<sub>3</sub> (<b>1</b>, H<sub>2</sub>bdc = 1,4-dicarboxybenzene, bib = 1,3-bis(imidazol-1-yl)benzene) and [Zn(NH<sub>2</sub>-bdc)(bib)](H<sub>2</sub>O)<sub>2</sub> (<b>2</b>, NH<sub>2</sub>-H<sub>2</sub>bdc = 2-amino-1,4-dicarboxybenzene) have been successfully prepared based on zinc nitrate, N-containing ligand and linear carboxylate ligand at the same hydrothermal condition. The anti-viability of compounds <b>1</b> and <b>2</b> against SMMC-7721 liver cancer cells was assessed with CCK-8 detection kit. Besides, the cell apoptosis and ROS detection experiments were also performed to study the related mechanism about the anticancer activity of compounds <b>1</b> and <b>2</b>.
DOI: 10.6084/m9.figshare.25226393
title: PopulationCodes

description: The property names, bioinformatic codes, and lat/long of each sampling location included in the analysis
DOI: 10.6084/m9.figshare.25226393.v1
title: PopulationCodes

description: The property names, bioinformatic codes, and lat/long of each sampling location included in the analysis
DOI: 10.6084/m9.figshare.23354325
title: Additional file 4 of Genetic variants of TLR4, including the novel variant, rs5030719, and related genes are associated with susceptibility to clinical malaria in African children

description: Additional file 4: Table S4. Table of statistically significant single nucleotide polymorphismsand insertion/deletion eventscorrelated with episodes of anaemia or Plasmodium sp. Parasitaemia in child and/or mother. The column ‘rs_value’ lists the rs number associated with the SNP as defined in the NCBI dbSNP repository, ‘maternal/child’ lists the genome in which the SNP was identified, and ‘association’ lists the phenotype statistically associated with the SNP. Statistical columns respectively list the beta value for the association, standard error, Wald-value for hypothesis-testing, the p-value for the test, exponent of the beta value’), as well as the upper and lower values for the 95% confidence interval limit. The final columns, ‘ref’ and ‘alt’ denote the reference and alternate genotypes for SNPs and indels.
DOI: 10.6084/m9.figshare.23354316
title: Additional file 1 of Genetic variants of TLR4, including the novel variant, rs5030719, and related genes are associated with susceptibility to clinical malaria in African children

description: Additional file 1: Table S1. Table of genes and single nucleotide polymorphismsanalysed in this study.
DOI: 10.6084/m9.figshare.23354325.v1
title: Additional file 4 of Genetic variants of TLR4, including the novel variant, rs5030719, and related genes are associated with susceptibility to clinical malaria in African children

description: Additional file 4: Table S4. Table of statistically significant single nucleotide polymorphismsand insertion/deletion eventscorrelated with episodes of anaemia or Plasmodium sp. Parasitaemia in child and/or mother. The column ‘rs_value’ lists the rs number associated with the SNP as defined in the NCBI dbSNP repository, ‘maternal/child’ lists the genome in which the SNP was identified, and ‘association’ lists the phenotype statistically associated with the SNP. Statistical columns respectively list the beta value for the association, standard error, Wald-value for hypothesis-testing, the p-value for the test, exponent of the beta value’), as well as the upper and lower values for the 95% confidence interval limit. The final columns, ‘ref’ and ‘alt’ denote the reference and alternate genotypes for SNPs and indels.
DOI: 10.6084/m9.figshare.23354322
title: Additional file 3 of Genetic variants of TLR4, including the novel variant, rs5030719, and related genes are associated with susceptibility to clinical malaria in African children

description: Additional file 3: Table S3. Hardy–Weinberg equilibrium statistical values for maternal single nucleotide polymorphismsstudied herein. Only SNPs with a minor allele count of more than 5 were included in this analysis. The column for ‘chi-square’ values is calculated with 1 degree of freedom. The column for ‘p-value’ includes a continuity correction. Column ‘D’ denotes the disequilibrium coefficient for each SNP.
DOI: 10.6084/m9.figshare.7103378
title: Additional file 12: of Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species

description: Expression of Cattle LncRNAs. FPKM values for all lncRNAs from each RNA-seq library (2 libraries per tissue) in cattle. (TSV 15586 kb)
DOI: 10.6084/m9.figshare.7103423
title: Additional file 15: of Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species

description: Tissue-specific Indices of Cattle LncRNAs. The calculated tissue-specific indices (TSI) for each lncRNA in each tissue. The “TSI A” and “TSI B” columns are the TSI calculated for each biological replicate. The “TSI Both” column is the F1 score of the TSI from both replicates. F1 is calculated as (2 * A * B) / (A + B) where A is TSI A and B is TSI. The “Name” and “Location” columns give the ID and genomic location of the lncRNA, and the following columns are the FPKM values from each library. (XLSX 1122 kb)
DOI: 10.25835/7ujy6oc0
title: Iron speciation and release during soil redox oscillations under leaching conditions

description: Figure data
DOI: 10.6084/m9.figshare.23354524.v1
title: Additional file 9 of Endometrium-derived mesenchymal stem cells suppress progression of endometrial cancer via the DKK1-Wnt/β-catenin signaling pathway

description: Additional file 9. Raw data of cell viability experiments.
DOI: 10.6084/m9.figshare.23354508.v1
title: Additional file 13 of Cytosine base editors (CBEs) for inducing targeted DNA base editing in Nicotiana benthamiana

description: Additional file 13: Table S2. Detail for all pairs of primers used in this study.
DOI: 10.6084/m9.figshare.23354505
title: Additional file 12 of Cytosine base editors (CBEs) for inducing targeted DNA base editing in Nicotiana benthamiana

description: Additional file 12: Table S1. The target sequences (T1 ~ T14) used in this study. Red letters indicated the PAM sequence of sgRNA.
DOI: 10.6084/m9.figshare.23354505.v1
title: Additional file 12 of Cytosine base editors (CBEs) for inducing targeted DNA base editing in Nicotiana benthamiana

description: Additional file 12: Table S1. The target sequences (T1 ~ T14) used in this study. Red letters indicated the PAM sequence of sgRNA.
DOI: 10.6084/m9.figshare.23354508
title: Additional file 13 of Cytosine base editors (CBEs) for inducing targeted DNA base editing in Nicotiana benthamiana

description: Additional file 13: Table S2. Detail for all pairs of primers used in this study.
DOI: 10.6084/m9.figshare.23354524
title: Additional file 9 of Endometrium-derived mesenchymal stem cells suppress progression of endometrial cancer via the DKK1-Wnt/β-catenin signaling pathway

description: Additional file 9. Raw data of cell viability experiments.
DOI: 10.17028/rd.lboro.25225853.v1
title: Supplemental information files for The influence of physical activity on neural responses to visual food cues in humans: A systematic review of functional magnetic resonance imaging studies

description: © the authors, CC-BY 4.0Supplemental files for article The influence of physical activity on neural responses to visual food cues in humans: A systematic review of functional magnetic resonance imaging studiesThis systematic review examined whether neural responses to visual food-cues measured by functional magnetic resonance imaging (fMRI) are influenced by physical activity. Seven databases were searched up to February 2023 for human studies evaluating visual food-cue reactivity using fMRI alongside an assessment of habitual physical activity or structured exercise exposure. Eight studies (1 exercise training, 4 acute crossover, 3 cross-sectional) were included in a qualitative synthesis. Structured acute and chronic exercise appear to lower food-cue reactivity in several brain regions, including the insula, hippocampus, orbitofrontal cortex (OFC), postcentral gyrus and putamen, particularly when viewing high-energy-density food cues. Exercise, at least acutely, may enhance appeal of low-energy-density food-cues. Cross-sectional studies show higher self-reported physical activity is associated with lower reactivity to food-cues particularly of high-energy-density in the insula, OFC, postcentral gyrus and precuneus. This review shows that physical activity may influence brain food-cue reactivity in motivational, emotional, and reward-related processing regions, possibly indicative of a hedonic appetite-suppressing effect. Conclusions should be drawn cautiously given considerable methodological variability exists across limited evidence.
DOI: 10.6084/m9.figshare.7101584
title: Laboratory study of dynamic mechanical characteristic of granite subjected to confining pressure and cyclic blast loading

description: Abstract To investigate the deformation characteristic of deep rock under cyclic blasting, the static-dynamic loading experimental equipment was set up. The dynamic strain gauges and high-speed (HS) camera were adopted to obtain strain field and the crack propagation of rock under confining pressure of 0 MPa, 5 MPa and 10 MPa. Under the one-time loading from cylindrical charge, the cracks in crushed zone were generated by shear and tensile failure. Circumference compressive stress is formed around borehole by confining pressure, and it reduces the circumference tensile failure by blast loading. The number of radial cracks and broken radius reduce with confining pressure increase. The reflected stress wave drives the existing fissures further developing. When specimens subjected to cyclic loading from PETN Cord, the rock is controlled by elastic deformation and no damage appeared after the first loading. With the cycle-index increase, the accumulation of plastic strain is observably when the strain exceeds the elastic limit strength of rock. The cumulative damage is nonlinear increased under cyclic loadings. The existing flaws or radial cracks run through specimen when the cumulative damage exceeds the material's yield strength.
DOI: 10.6084/m9.figshare.16625261.v1
title: Additional file 6 of The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation

description: Additional file 6: Data S6. FASTA file of predicted Pgt miRNAs.
DOI: 10.6084/m9.figshare.16625267.v1
title: Additional file 8 of The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation

description: Additional file 8: Data S8. FASTA file of predicted wheat miRNAs.
DOI: 10.6084/m9.figshare.16625264.v1
title: Additional file 7 of The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation

description: Additional file 7: Data S7. FASTA file of predicted wheat siRNAs.
DOI: 10.15468/dl.3vsedw
title: Occurrence Download

description: A dataset containing 169959058 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Canada",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 169959058 records from 1680 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106369-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh425224.07fu
title: SH425224.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh425225.07fu
title: SH425225.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.