cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11533224.v1
title: A de novo genome assembly of swamp buffalo (Bubalus bubalis carabanesis) at chromosome-level

description: Swamp buffalo (<i>Bubalus carabanesis</i>), a sub-species of water buffalo (<i>Bubalus bubalis</i>), is an essential farm animal for the drought power and meat production. The chromosomal level genome of swamp buffalo could facilitate to understand the genetic characteristics and genome evolution on this species. In this study, we assembled the high-quality genome of swamp buffalo by using HiSeq short reads, PacBio long reads and Hi-C data. The estimation of the genome size is 2.88 Gb using 21-mer frequency distribution analysis with jellyfish. A final assembly of 2.67Gb genome sequences was obtained, of which 97.91% of the assembled sequences were anchored to 24 pseudochromosomes with a scaffold N50 123.15 Mb and the longest pseudochromosome of 279.78 Mb. We further annotated repetitive elements (47.1%), NcRNA (0.11%) and predicted 18,860 protein-coding genes, of which 96.41% (18,182) were functionally annotated. The chromosomal level genome provides a reference for functional genes mapping and a resource for evolution analysis of swamp buffalo. Moreover, it will be helpful for genetic improvement and molecular breeding of swamp buffalo.
DOI: 10.6084/m9.figshare.11532960
title: RETRACTED ARTICLE: Psychological predictors behind the intention to drink and drive among female drivers: Application of extended theory of planned behavior

description: We, the Editor and Publisher of Traffic Injury Prevention, have retracted the following article: Ankit Kumar Yadav. Psychological predictors behind the intention to drink and drive among female drivers: Application of extended theory of planned behavior. <i>Traffic Injury Prevention</i>. 2020. https://doi.org/10.1080/15389588.2019.1703961. The author has requested the retraction of his article due to an error in one of the collected psychological measures. During data extraction, the responses for ‘attitude’ and ‘intention’ measures were switched and may have influenced the findings from the developed regression model and its results. As a result, the Editor and Publisher have agreed to retract the article in full. We have investigated and have been informed in our decision-making by our policy on publishing ethics and integrity and the COPE guidelines on retractions. The retracted article will remain online to maintain the scholarly record, but it will be digitally watermarked on each page as “Retracted”.
DOI: 10.6084/m9.figshare.11532960.v2
title: RETRACTED ARTICLE: Psychological predictors behind the intention to drink and drive among female drivers: Application of extended theory of planned behavior

description: We, the Editor and Publisher of Traffic Injury Prevention, have retracted the following article: Ankit Kumar Yadav. Psychological predictors behind the intention to drink and drive among female drivers: Application of extended theory of planned behavior. <i>Traffic Injury Prevention</i>. 2020. https://doi.org/10.1080/15389588.2019.1703961. The author has requested the retraction of his article due to an error in one of the collected psychological measures. During data extraction, the responses for ‘attitude’ and ‘intention’ measures were switched and may have influenced the findings from the developed regression model and its results. As a result, the Editor and Publisher have agreed to retract the article in full. We have investigated and have been informed in our decision-making by our policy on publishing ethics and integrity and the COPE guidelines on retractions. The retracted article will remain online to maintain the scholarly record, but it will be digitally watermarked on each page as “Retracted”.
DOI: 10.6084/m9.figshare.11532960.v1
title: Psychological predictors behind the intention to drink and drive among female drivers: Application of extended theory of planned behavior

description: <b>Objective:</b> The present study utilized an extended version of the Theory of Planned Behavior (TPB) to examine the psychological predictors behind the intention to drink and drive among female Indian drivers. <b>Method:</b> Three hundred and forty four female drivers (Mean age = 25.9, SD = 5.6, Age range = 18 – 35 years) completed a self-reported questionnaire about the measures related to standard TPB variables (attitude, subjective norms, perceived behavioral control and intention to drink and drive) along with additional constructs such as alcohol expectancies, risk perception, fatalistic beliefs, moral norms, past behavior and driver demographics. Pearson correlation matrix was generated to examine bivariate correlations among the various predictors. Hierarchical multiple regression model was developed to examine the influence of psychological predictors on the intention to drink and drive. <b>Results:</b> About 25% of the participants reported that they had driven under the influence of alcohol during the previous year. Hierarchical multiple regression results indicated that standard TPB variables explained 67.2% of the variance in drink and drive intention. Attitude was found as the strongest predictor followed by perceived behavioral control and subjective norms. Furthermore, influence of additional variables such as past behavior and moral norms on intention were found to be significant. The overall extended TPB model accounted for 71.5% of the variability in the intention of getting engaged in alcohol-impaired driving. <b>Conclusion:</b> The study demonstrates the usefulness of TPB model which played a significant role in predicting the intention to drink and drive along with the utility of additional significant variables. The findings of this study may be useful while designing and implementing policy interventions to reduce risks associated with drinking and driving among female drivers.
DOI: 10.6084/m9.figshare.11532081
title: MOESM1 of Xpert MTB/RIF assay for diagnosis of extrapulmonary tuberculosis in children: a systematic review and meta-analysis

description: Additional file 1. Study search strategy
DOI: 10.6084/m9.figshare.11532081.v1
title: MOESM1 of Xpert MTB/RIF assay for diagnosis of extrapulmonary tuberculosis in children: a systematic review and meta-analysis

description: Additional file 1. Study search strategy
DOI: 10.6084/m9.figshare.11531940
title: MOESM5 of Circadian disruption of core body temperature in trauma patients: a single-center retrospective observational study

description: Additional file 5. Individual circadian parameter data after periodic regression.
DOI: 10.6084/m9.figshare.11531940.v1
title: MOESM5 of Circadian disruption of core body temperature in trauma patients: a single-center retrospective observational study

description: Additional file 5. Individual circadian parameter data after periodic regression.
DOI: 10.6084/m9.figshare.11531889
title: MOESM6 of Genome sequence of Pseudomonas aeruginosa PAO1161, a PAO1 derivative with the ICEPae1161 integrative and conjugative element

description: Additional file 6: Table S6. Strains, plasmids and primers used in this study.
DOI: 10.6084/m9.figshare.11531889.v1
title: MOESM6 of Genome sequence of Pseudomonas aeruginosa PAO1161, a PAO1 derivative with the ICEPae1161 integrative and conjugative element

description: Additional file 6: Table S6. Strains, plasmids and primers used in this study.
DOI: 10.6084/m9.figshare.11531883
title: MOESM5 of Genome sequence of Pseudomonas aeruginosa PAO1161, a PAO1 derivative with the ICEPae1161 integrative and conjugative element

description: Additional file 5: Table S5. Gene content of ICEPae1161. Orthologs from other ICEs were predicted using Mauve assuming 70% of identity and at least 70% of the sequence coverage.
DOI: 10.6084/m9.figshare.11531880
title: MOESM4 of Genome sequence of Pseudomonas aeruginosa PAO1161, a PAO1 derivative with the ICEPae1161 integrative and conjugative element

description: Additional file 4: Table S4. SNPs and indels identified in P. aeruginosa PAO1161 genome resulting in amino acid changes relative to corresponding PAO1-UW proteins. PAO1161 strain specific changes, identified by comparison of PAO1161 proteins with sequences in Pseudomonas Ortholog Groups encompassing corresponding PAO1 proteins, are indicated by bolded gene names.
DOI: 10.6084/m9.figshare.11531883.v1
title: MOESM5 of Genome sequence of Pseudomonas aeruginosa PAO1161, a PAO1 derivative with the ICEPae1161 integrative and conjugative element

description: Additional file 5: Table S5. Gene content of ICEPae1161. Orthologs from other ICEs were predicted using Mauve assuming 70% of identity and at least 70% of the sequence coverage.
DOI: 10.6084/m9.figshare.11531880.v1
title: MOESM4 of Genome sequence of Pseudomonas aeruginosa PAO1161, a PAO1 derivative with the ICEPae1161 integrative and conjugative element

description: Additional file 4: Table S4. SNPs and indels identified in P. aeruginosa PAO1161 genome resulting in amino acid changes relative to corresponding PAO1-UW proteins. PAO1161 strain specific changes, identified by comparison of PAO1161 proteins with sequences in Pseudomonas Ortholog Groups encompassing corresponding PAO1 proteins, are indicated by bolded gene names.
DOI: 10.6084/m9.figshare.11531874
title: MOESM3 of Genome sequence of Pseudomonas aeruginosa PAO1161, a PAO1 derivative with the ICEPae1161 integrative and conjugative element

description: Additional file 3: Table S3. SNPs and indels identified in P. aeruginosa PAO1161 genome changing the reading frames of genes. The effect of a mutation is predicted using the PAO1-UW genome as a reference. The sequences of PAO1161 proteins were compared with sequences from corresponding Pseudomonas Ortholog Group (POG) for PAO1 proteins.
DOI: 10.6084/m9.figshare.11531874.v1
title: MOESM3 of Genome sequence of Pseudomonas aeruginosa PAO1161, a PAO1 derivative with the ICEPae1161 integrative and conjugative element

description: Additional file 3: Table S3. SNPs and indels identified in P. aeruginosa PAO1161 genome changing the reading frames of genes. The effect of a mutation is predicted using the PAO1-UW genome as a reference. The sequences of PAO1161 proteins were compared with sequences from corresponding Pseudomonas Ortholog Group (POG) for PAO1 proteins.
DOI: 10.6084/m9.figshare.11531868
title: MOESM2 of Genome sequence of Pseudomonas aeruginosa PAO1161, a PAO1 derivative with the ICEPae1161 integrative and conjugative element

description: Additional file 2: Table S2. Synonymous and intergenic SNPs/MNPs and indels identified in PAO1161 / PAO1-UW genome comparison.
DOI: 10.6084/m9.figshare.11531865
title: MOESM1 of Genome sequence of Pseudomonas aeruginosa PAO1161, a PAO1 derivative with the ICEPae1161 integrative and conjugative element

description: Additional file 1: Table S1. P. aeruginosa genomes used to construct phylogenetic tree presented in Fig. 1b.
DOI: 10.6084/m9.figshare.11531868.v1
title: MOESM2 of Genome sequence of Pseudomonas aeruginosa PAO1161, a PAO1 derivative with the ICEPae1161 integrative and conjugative element

description: Additional file 2: Table S2. Synonymous and intergenic SNPs/MNPs and indels identified in PAO1161 / PAO1-UW genome comparison.
DOI: 10.6084/m9.figshare.11531865.v1
title: MOESM1 of Genome sequence of Pseudomonas aeruginosa PAO1161, a PAO1 derivative with the ICEPae1161 integrative and conjugative element

description: Additional file 1: Table S1. P. aeruginosa genomes used to construct phylogenetic tree presented in Fig. 1b.
DOI: 10.6084/m9.figshare.11531769
title: MOESM3 of School-based nutrition interventions for Indigenous children in Canada: a scoping review

description: Additional file 3. Extraction grid. Full extraction grid.
DOI: 10.6084/m9.figshare.11531769.v1
title: MOESM3 of School-based nutrition interventions for Indigenous children in Canada: a scoping review

description: Additional file 3. Extraction grid. Full extraction grid.
DOI: 10.6084/m9.figshare.11531715
title: MOESM4 of Expression of the NEK family in normal and cancer tissue: an immunohistochemical study

description: Additional file 4: Table S2. Quantitative expression patterns of NEK1, NEK2, NEK3, and NEK5 in tissue microarrays comparing benign and malignant neoplasms tissue of Esophagus, Stomach, Colon, Lung, Thyroid, Breast, Uterine cervix, Pancreas, Prostate, and Kidney.
DOI: 10.6084/m9.figshare.11531715.v1
title: MOESM4 of Expression of the NEK family in normal and cancer tissue: an immunohistochemical study

description: Additional file 4: Table S2. Quantitative expression patterns of NEK1, NEK2, NEK3, and NEK5 in tissue microarrays comparing benign and malignant neoplasms tissue of Esophagus, Stomach, Colon, Lung, Thyroid, Breast, Uterine cervix, Pancreas, Prostate, and Kidney.
DOI: 10.6084/m9.figshare.11531706
title: MOESM3 of Expression of the NEK family in normal and cancer tissue: an immunohistochemical study

description: Additional file 3: Table S1. Semiquantitative expression patterns of NEK1, NEK2, NEK3, and NEK5 in tissue microarrays comparing benign and malignant neoplasms tissue of Esophagus, Stomach, Colon, Lung, Thyroid, Breast, Uterine cervix, Pancreas, Prostate, and Kidney.
DOI: 10.6084/m9.figshare.11531706.v1
title: MOESM3 of Expression of the NEK family in normal and cancer tissue: an immunohistochemical study

description: Additional file 3: Table S1. Semiquantitative expression patterns of NEK1, NEK2, NEK3, and NEK5 in tissue microarrays comparing benign and malignant neoplasms tissue of Esophagus, Stomach, Colon, Lung, Thyroid, Breast, Uterine cervix, Pancreas, Prostate, and Kidney.
DOI: 10.6084/m9.figshare.11531589
title: MOESM2 of Breakfast consumption habits of Australian men participating in the “Typical Aussie Bloke” study

description: Additional file 2. Supplementary Data File. This file contains the raw data presented in this paper
DOI: 10.6084/m9.figshare.11531589.v1
title: MOESM2 of Breakfast consumption habits of Australian men participating in the “Typical Aussie Bloke” study

description: Additional file 2. Supplementary Data File. This file contains the raw data presented in this paper
DOI: 10.6084/m9.figshare.11531559
title: MOESM1 of Whole genome sequencing of Borrelia miyamotoi isolate Izh-4: reference for a complex bacterial genome

description: Additional file 1: Table S1. Strains used in this study with NCBI Biosample accession numbers.
DOI: 10.6084/m9.figshare.11531559.v1
title: MOESM1 of Whole genome sequencing of Borrelia miyamotoi isolate Izh-4: reference for a complex bacterial genome

description: Additional file 1: Table S1. Strains used in this study with NCBI Biosample accession numbers.
DOI: 10.6084/m9.figshare.11531538
title: MOESM7 of The mitochondrial carrier pathway transports non-canonical substrates with an odd number of transmembrane segments

description: Additional file 7: Table S2. Individual data values for quantifications in supplementary figures. (XSLX)
DOI: 10.6084/m9.figshare.11531532
title: MOESM6 of The mitochondrial carrier pathway transports non-canonical substrates with an odd number of transmembrane segments

description: Additional file 6: Table S1. Individual data values for quantifications in main figures. (XSLX)
DOI: 10.6084/m9.figshare.11531538.v1
title: MOESM7 of The mitochondrial carrier pathway transports non-canonical substrates with an odd number of transmembrane segments

description: Additional file 7: Table S2. Individual data values for quantifications in supplementary figures. (XSLX)
DOI: 10.6084/m9.figshare.11531532.v1
title: MOESM6 of The mitochondrial carrier pathway transports non-canonical substrates with an odd number of transmembrane segments

description: Additional file 6: Table S1. Individual data values for quantifications in main figures. (XSLX)
DOI: 10.6084/m9.figshare.11531400
title: MOESM3 of Prediction of pre-eclampsia in nulliparous women using routinely collected maternal characteristics: a model development and validation study

description: Additional file 3. Australian risk prediction calculator for pre-eclampsia for women in their first pregnancy.
DOI: 10.6084/m9.figshare.11531400.v1
title: MOESM3 of Prediction of pre-eclampsia in nulliparous women using routinely collected maternal characteristics: a model development and validation study

description: Additional file 3. Australian risk prediction calculator for pre-eclampsia for women in their first pregnancy.
DOI: 10.6084/m9.figshare.11531370
title: MOESM4 of Treatment effects of Chinese medicine (Yi-Qi-Qing-Jie herbal compound) combined with immunosuppression therapies in IgA nephropathy patients with high-risk of end-stage renal disease (TCM-WINE): study protocol for a randomized controlled trial

description: Additional file 4. Sample size calculation.
DOI: 10.6084/m9.figshare.11531370.v1
title: MOESM4 of Treatment effects of Chinese medicine (Yi-Qi-Qing-Jie herbal compound) combined with immunosuppression therapies in IgA nephropathy patients with high-risk of end-stage renal disease (TCM-WINE): study protocol for a randomized controlled trial

description: Additional file 4. Sample size calculation.
DOI: 10.6084/m9.figshare.11531262
title: MOESM8 of Living on the edge: comparative phylogeography and phylogenetics of Oreohelix land snails at their range edge in Western Canada

description: Additional file 8. Input file for Popart, used to create haplotype network.
DOI: 10.6084/m9.figshare.11531256
title: MOESM7 of Living on the edge: comparative phylogeography and phylogenetics of Oreohelix land snails at their range edge in Western Canada

description: Additional file 7. General input file for ITS2, used to calculate measures such as haplotype diversity, nucleotide diversity, etc. (FAS 131 kb)
DOI: 10.6084/m9.figshare.11531262.v1
title: MOESM8 of Living on the edge: comparative phylogeography and phylogenetics of Oreohelix land snails at their range edge in Western Canada

description: Additional file 8. Input file for Popart, used to create haplotype network.
DOI: 10.6084/m9.figshare.11531256.v1
title: MOESM7 of Living on the edge: comparative phylogeography and phylogenetics of Oreohelix land snails at their range edge in Western Canada

description: Additional file 7. General input file for ITS2, used to calculate measures such as haplotype diversity, nucleotide diversity, etc. (FAS 131 kb)
DOI: 10.6084/m9.figshare.11531250
title: MOESM6 of Living on the edge: comparative phylogeography and phylogenetics of Oreohelix land snails at their range edge in Western Canada

description: Additional file 6. Input file for ITS2 GenBank submission. Sequences have been trimmed to all have the same reading frame. (FAS 108 kb)
DOI: 10.6084/m9.figshare.11531250.v1
title: MOESM6 of Living on the edge: comparative phylogeography and phylogenetics of Oreohelix land snails at their range edge in Western Canada

description: Additional file 6. Input file for ITS2 GenBank submission. Sequences have been trimmed to all have the same reading frame. (FAS 108 kb)
DOI: 10.6084/m9.figshare.11531244
title: MOESM5 of Living on the edge: comparative phylogeography and phylogenetics of Oreohelix land snails at their range edge in Western Canada

description: Additional file 5. General input file for COI, used to calculate measures such as haplotype diversity, nucleotide diversity, etc. (FAS 161 kb)
DOI: 10.6084/m9.figshare.11531244.v1
title: MOESM5 of Living on the edge: comparative phylogeography and phylogenetics of Oreohelix land snails at their range edge in Western Canada

description: Additional file 5. General input file for COI, used to calculate measures such as haplotype diversity, nucleotide diversity, etc. (FAS 161 kb)
DOI: 10.6084/m9.figshare.11531238
title: MOESM4 of Living on the edge: comparative phylogeography and phylogenetics of Oreohelix land snails at their range edge in Western Canada

description: Additional file 4. Input file for COI GenBank submission. Sequences have been trimmed to all have the same reading frame. (FAS 157 kb)
DOI: 10.6084/m9.figshare.11531232
title: MOESM3 of Living on the edge: comparative phylogeography and phylogenetics of Oreohelix land snails at their range edge in Western Canada

description: Additional file 3. File used to create PAUP* phylogenetic tree containing data from this study as well as Weaver et al. [12]. (FAS 213 kb)
DOI: 10.6084/m9.figshare.11531238.v1
title: MOESM4 of Living on the edge: comparative phylogeography and phylogenetics of Oreohelix land snails at their range edge in Western Canada

description: Additional file 4. Input file for COI GenBank submission. Sequences have been trimmed to all have the same reading frame. (FAS 157 kb)
DOI: 10.6084/m9.figshare.11531226
title: MOESM2 of Living on the edge: comparative phylogeography and phylogenetics of Oreohelix land snails at their range edge in Western Canada

description: Additional file 2. Information about each sample, taken during time of sampling. Includes old sample names.
DOI: 10.6084/m9.figshare.11531232.v1
title: MOESM3 of Living on the edge: comparative phylogeography and phylogenetics of Oreohelix land snails at their range edge in Western Canada

description: Additional file 3. File used to create PAUP* phylogenetic tree containing data from this study as well as Weaver et al. [12]. (FAS 213 kb)
DOI: 10.6084/m9.figshare.11531226.v1
title: MOESM2 of Living on the edge: comparative phylogeography and phylogenetics of Oreohelix land snails at their range edge in Western Canada

description: Additional file 2. Information about each sample, taken during time of sampling. Includes old sample names.
DOI: 10.6084/m9.figshare.11531142
title: MOESM2 of A comprehensive epigenomic analysis of phenotypically distinguishable, genetically identical female and male Daphnia pulex

description: Additional file 2: Table S2. Enriched Reactome pathways in differentially expressed or regulated events between male and female Daphnia pulex. A) Enrichment of differentially expressed transcripts between male and female D. pulex, B) Enrichment of differentially expressed genes, C) Enrichment of differentially expressed transcripts not contained in differentially expressed genes, D) Enrichment of differentially regulated spice variants between male and female, E) Enrichment of genes with differentially methylated CpGs, F) Enrichment of genes with differentially regulated histone H3 trimethylation at lysine 4 (H3K4me3), G) Enrichment of genes with differentially regulated histone H3 trimethylation at lysine 4 (H3K4me3), H) Enrichment analysis of genes with co-occurring modifications (CpG methylation, H3K4me3 and H3K27me3), I) Enrichment analysis of main clusters of genes with co-varying expression and modifications from heatmap in Fig. 7.d.
DOI: 10.6084/m9.figshare.11531142.v1
title: MOESM2 of A comprehensive epigenomic analysis of phenotypically distinguishable, genetically identical female and male Daphnia pulex

description: Additional file 2: Table S2. Enriched Reactome pathways in differentially expressed or regulated events between male and female Daphnia pulex. A) Enrichment of differentially expressed transcripts between male and female D. pulex, B) Enrichment of differentially expressed genes, C) Enrichment of differentially expressed transcripts not contained in differentially expressed genes, D) Enrichment of differentially regulated spice variants between male and female, E) Enrichment of genes with differentially methylated CpGs, F) Enrichment of genes with differentially regulated histone H3 trimethylation at lysine 4 (H3K4me3), G) Enrichment of genes with differentially regulated histone H3 trimethylation at lysine 4 (H3K4me3), H) Enrichment analysis of genes with co-occurring modifications (CpG methylation, H3K4me3 and H3K27me3), I) Enrichment analysis of main clusters of genes with co-varying expression and modifications from heatmap in Fig. 7.d.