cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/bzx3fhd6hw.1
title: Staining ability of herbal tea preparations on a nano-filled composite restorative material

description: One hundred and twelve discs were prepared from FiltekTM Z350XT composite  Samples were divided into Green Tea  Moringa Tea, Hibiscus Tea, and Artificial Saliva (AS) groups and immersed in freshly prepared beverages for 15 minutes each day for 45 days. Digital Reflectance Spectrophotometer was utilized to record color change and reported as ∆E Baseline, ∆E at 30 days, and ∆E at 45 days. Mean difference was calculated at 30 days (Mean difference of ∆E at 30 days = ∆E at 30 days - ∆E at baseline) and 45 days (Mean difference of ∆E at 45 days = ∆E at 45 days - ∆E at baseline).
DOI: 10.5281/zenodo.7118559
title: MicrolibDataset

description: Dataset associated with microlib project, including 87 microstructures to which SliceGAN was applied to generate 3D volumes.
DOI: 10.6084/m9.figshare.19100375.v1
title: H_r and H_f matrices of USEEIOv1.2 and v2.0.1

description: H_r and H_f matrices for USEEIO v1.2 and v2.0.1 models
DOI: 10.6084/m9.figshare.19419836
title: Daily, County-Level Wet-Bulb Globe Temperature, Universal Thermal Climate Index, and Other Heat Metrics for the Contiguous United States, 2000-2020

description: This data set includes daily, population-weighted mean values of various heat metrics for every county in the contiguous United States from 2000-2020. The dataset methodology, usage notes, and additional citations are published in <em>Scientific Data </em>(see reference below for Spangler et al. [2022]). Minimum, maximum, and mean ambient temperature, dew-point temperature, humidex, heat index, net effective temperature, wet-bulb globe temperature, and Universal Thermal Climate Index are included. Note that Monroe County, Florida (FIPS: 12087) and Nantucket County, Massachusetts (FIPS 25019) are missing due to unavailability of ERA5-Land data for Key West, Florida and Nantucket, MA. To use these data, assign the data from the .Rds file to a new data frame in R using the readRDS() function. Please cite the use of this data set with the following reference. Note that additional citations for specific variables can be found in Table 2. K.R. Spangler, S. Liang, and G.A. Wellenius. "Wet-Bulb Globe Temperature, Universal Thermal Climate Index, and Other Heat Metrics for US Counties, 2000-2020." <em>Scientific Data</em> (2022). doi: 10.1038/s41597-022-01405-3 This data set contains modified Copernicus Climate Change Service information (2022), as described and cited in the manuscript referenced above. Neither the European Commission nor ECMWF is responsible for any use that may be made of the Copernicus information or data it contains. This data set is provided “as is” with no warranty of any kind.
DOI: 10.6084/m9.figshare.21118450
title: Supplementary Material for: Risk Factors for Immune Checkpoint Inhibitor-Related Pneumonitis in Cancer Patients: A Systemic Review and Meta-Analysis

description: <b><i>Background:</i></b> Immune checkpoint inhibitors (ICIs) can lead to one of the common and quite serious immune-related adverse events (irAEs) in a real-world setting, namely, checkpoint inhibitor pneumonitis (CIP). <b><i>Objective:</i></b> We aimed to investigate the potential risk factors for CIP in cancer patients treated by ICIs and quantify the association. <b><i>Methods:</i></b> We conducted a systematic literature review in PubMed, EMBASE, and Web of Science from January 1, 2000, to March 20, 2022, with no study design restrictions. Studies evaluating the risk factors for CIP in cancer patients treated with ICIs-containing regimes were included. Odds ratios (ORs) with 95% confidence intervals (CIs) were calculated for risk factors of CIP by using random-effect model. Heterogeneity was assessed by sensitivity analysis and subgroup analysis regarding CIP severity, geographical regions, cancer types, treatment regimes, and ICI types. <b><i>Results:</i></b> A total of 35 studies comprising 142,703 patients were eventually included. The incidence of grade I–V and grade III–V CIP in cancer patients was 0.16 (95% CI: 0.14–0.18) and 0.06 (95% CI: 0.05–0.08), respectively. When combining the adjusted ORs, the following risk factors were significantly associated with the development of CIP: squamous cell carcinoma (OR: 1.31, 95% CI: 1.18–1.45), previous thoracic radiotherapy (OR: 2.07, 95% CI: 1.34–3.19), preexisting radiation-induced pneumonitis (OR: 3.62, 95% CI: 1.53–8.58), preexisting respiratory disease (OR: 2.43, 95% CI: 1.45–4.07), preexisting interstitial lung disease (OR: 5.78, 95% CI: 3.08–10.85), preexisting ground glass attenuation (OR: 11.48, 95% CI: 1.13–116.74), preexisting honeycombing (OR: 6.11, 95% CI: 2.37–15.79), preexisting pulmonary emphysema (OR: 2.72, 95% CI: 1.00–7.36), use of pembrolizumab (OR: 2.89, 95% CI: 1.56–5.35, <i>I</i><sup>2</sup> = 0%), high PD-L1 expression (OR: 3.59, 95% CI: 1.23–10.50), and hypoalbuminemia (OR: 0.3, 95% CI: 0.14–0.64). When including the crude ORs, smoking history (OR: 1.39, 95% CI: 1.14–1.71), neutrophil-lymphocyte ratio (OR: 1.04, 95% CI: 1.01–1.08), and c-reactive protein (OR: 1.08, 95% CI: 1.01–1.16) were also risk factors for CIP. <b><i>Conclusion:</i></b> Histological characteristics, specific previous lung diseases and treatment history, treatment regimen, PD-L1 expression level, and serological biomarkers are all closely associated with the development of CIP. These findings would be useful for oncologists to optimize the appropriate options of ICIs and close monitoring during immunotherapy treatments, particularly for patients identified as having a higher risk for CIP.
DOI: 10.6084/m9.figshare.21387261
title: Supplementary Material for: Obesity in Adults: A 2022 Adapted Clinical Practice Guideline for Ireland

description: <b><i>Background:</i></b> This Clinical Practice Guideline (CPG) for the management of obesity in adults in Ireland, adapted from the Canadian CPG, defines obesity as a complex chronic disease characterised by excess or dysfunctional adiposity that impairs health. The guideline reflects substantial advances in the understanding of the determinants, pathophysiology, assessment, and treatment of obesity. <b><i>Summary:</i></b> It shifts the focus of obesity management toward improving patient-centred health outcomes, functional outcomes, and social and economic participation, rather than weight loss alone. It gives recommendations for care that are underpinned by evidence-based principles of chronic disease management; validate patients’ lived experiences; move beyond simplistic approaches of “eat less, move more” and address the root drivers of obesity. <b><i>Key Messages:</i></b> People living with obesity face substantial bias and stigma, which contribute to increased morbidity and mortality independent of body weight. Education is needed for all healthcare professionals in Ireland to address the gap in skills, increase knowledge of evidence-based practice, and eliminate bias and stigma in healthcare settings. We call for people living with obesity in Ireland to have access to evidence-informed care, including medical, medical nutrition therapy, physical activity and physical rehabilitation interventions, psychological interventions, pharmacotherapy, and bariatric surgery. This can be best achieved by resourcing and fully implementing the Model of Care for the Management of Adult Overweight and Obesity. To address health inequalities, we also call for the inclusion of obesity in the Structured Chronic Disease Management Programme and for pharmacotherapy reimbursement, to ensure equal access to treatment based on health-need rather than ability to pay.
DOI: 10.13020/xamg-cs69
title: APAL Coupling Study 2019

description: Motion sickness is preceded by differences in the quantitative kinematics of body sway between individuals who (later)
become sick and those who do not. In existing research, this effect has been demonstrated only in measures of body
sway, relative to the earth. However, body sway can become coupled with imposed oscillatory motion of the
illuminated environment, and the nature of this coupling may differ between individuals who become sick and those
who do not. We asked whether body sway would become coupled to complex oscillations of the illuminated
environment, and whether individual differences in such coupling might be precursors of motion sickness. Standing
participants were exposed to complex oscillation of the illuminated environment. We examined the strength of coupling
as a function of time during exposure. Following exposure, some participants reported motion sickness. The nature
and temporal evolution of coupling differed between participants who later reported motion sickness and those who did
not. Our results show that people can couple the complex dynamics of body sway with complex imposed motion, and
that differences in the nature of this coupling are related to the risk of motion sickness.
description: APAL_CouplingStudy_2019_MovementData is a ZIP folder of all the movement data, organized into subject-specific Excel files. Each excel file is labeled by Subject number and the experimental condition they were in. APAL_CouplingStudy_2019_Demographics is an Excel file containing the demographics and SSQ (1-3) scores of all participants.
DOI: 10.15454/e2vtrb/1tk3re
title: eukaryotic_proteins_clustered.aa

description: 4,6M representative clusters of 8M of eukaryotic proteins
DOI: 10.15454/e2vtrb/3xpvtn
title: orphan_Euka.aa

description: Orphan proteins from contigs with more than 50% eukaryotic proteins
DOI: 10.15454/e2vtrb/54edij
title: orphan_proteins_clustered.tab

description: Composition of orphan protein clusters
DOI: 10.15454/e2vtrb/a2boib
title: eukaryotic_proteins_taxonomy_krona.html

description: Krona representation of 8M of validated eukaryotic proteins taxonomic information from last common ancestor algorithm of Diamond
DOI: 10.15454/e2vtrb/gaky0c
title: Supplementary_data_Figures.pdf

description: Supplementary Figures : (1) Phylogenetic tree of Augustus ab initio gene models for all eukaryotic kingdoms with distribution contigs (A), predicted proteins (B) and validated proteins (C) according to datasets (2) BUSCO scores displayed by dataset.
DOI: 10.15454/e2vtrb/n0hhak
title: metagenomeID.txt

description: List of metagenomes ID from the Joint Genome Institute and dataset associated type.
DOI: 10.15454/e2vtrb/no0z7d
title: orphan_proteins_clustered.aa

description: 288,612 representative clusters of orphan proteins
DOI: 10.15454/e2vtrb/t1ohix
title: eukaryotic_proteins.aa

description: 8M of eukaryotic proteins
DOI: 10.25919/5d395ef9a4291
title: Gold Nanoparticle Data Set

description: This is a set of 4000 gold (Au) nanoparticle FINAL CONFIGURATIONS, for use in data-driven studies. These structures have been optimized (fully relaxed) using molecular dynamics with an embedded atom (EAM) interatomic potential, at various temperatures and growth rates. All files are in XYZ format, and the naming convention is defined in the accompanying csv file that lists all of the structural features and property indicators (see Supporting Attachments). Sizes range from 236 atoms to 14277 atoms, with both crystalline and non-crystalline configurations and regions. Each nanoparticle has been characterised using a variety of topological features, including size, lattice structure, surface curvature and a number of order parameters. The final two columns are target labels, providing the total energy and the excess formtion energy. Other features can also be used as labels as desired.
DOI: 10.48443/abge-r811
title: Plant presence and percent cover (DP1.10058.001)
title: RELEASE-2021

description: This data product contains the quality-controlled, native sampling resolution data from NEON's plant diversity sampling. The presence and percent cover of species is documented in square, multi-scale plots. The presence and percent cover of plant species and ground cover is observed in six 1m2 subplots per plot. The presence of species is observed in six 10m2 subplots and four 100m2 subplots per plot, which can be combined for a list of species at the 400m2 plot scale. For additional details, see the data product user guide, protocol, and science design listed in the Documentation section in this data product's details webpage.

Latency: The expected time from data and/or sample collection in the field to data publication is as follows, for each of the data tables (in days) in the downloaded data package. See the Data Product User Guide for more information.

div_10m2Data100m2Data:  135

div_1m2Data:  135

div_geneticarchive:  120

div_voucher:  215
description: Up to thirty plots are measured at each site. Plots are sampled annually at most sites to correspond with peak greenness, and twice a year at select sites with bimodal peaks in greenness and species composition. The multi-scale plot design is consistent with methods of the Carolina Vegetation Project. The files provided with this data product also include records of plant vouchers and foliar tissue for analyses by the ecological community that are stored at external archives, and a table to facilitate the resolution of species not identified when encountered in the field during observation and data entry.
DOI: 10.5281/zenodo.3941689
title: Multidecadal Polynya Formation in a (Conceptual) Box Model

description: Data sets and model code for Multidecadal Polynya Formation in a (Conceptual) Box Model submitted for Ocean Sciences, 2020.
DOI: 10.5281/zenodo.5554851
title: DCNDS Project Dataset - P2P Botnet Detection Using Enhanced Peer Hunter

description: This dataset represents the Enhanced Peer Hunter implementation that was deployed on two NREN within the AsiaConnect project in Malaysia and Indonesia. Based on a 30 days measurement from Saturday, June 19, 2021 4:00:00 PM GMT - Monday, July 19, 2021 3:59:55 PM GMT, the list of detections and all flows associated with the detected machines are listed in the dataset (2 files per country). The dataset would allow any future p2p botnet detection mechanisms to leverage this (flow) data to train and evaluate their detection mechanisms. Take note that all IP addresses have been anonymized using a hash function with salt to avoid leakage of information.
DOI: 10.5281/zenodo.6413373
title: Data from 'Fast-growing species shape the evolution of reef corals'

description: Datasets and scripts generated and/or analysed in the paper 'Fast-growing species shape the evolution of reef corals', published in Nature Communications. More details can be found in the README file.
DOI: 10.5281/zenodo.6414693
title: MDAL v2: Experimental MSG daily albedo 01-11-2020 -- 31-10-2021

description: This dataset was produced using an update to the MDAL retrieval algorithm (i.e. an update of the operational MDAL algorithm at time of publication). Depending on outcome of peer-review and EUMETSAT-internal review, the updated version will replace the currently operational one.
DOI: 10.5445/ir/1000152116
title: Chromophores and chemical composition of brown carbon characterized at an urban kerbside by excitation-emission spectroscopy and mass spectrometry

description: The data in the Excel files are related to the publication Jiang et al., ACP, 2022. Each sheet of the Excel files corresponds to one plot in the publication as repeated below. The data originates mainly from Aqualog and FIGAERO-CIMS measurements. The figures and captions from the publication are shown in the following to allow for a good understanding of the data files. Jiang, F., Song, J., Bauer, J., Gao, L., Vallon, M., Gebhardt, R., Leisner, T., Norra, S., and Saathoff, H.: Chromophores and chemical composition of brown carbon characterized at an urban kerbside by excitation-emission spectroscopy and mass spectrometry, Atmos. Chem. Phys. Discuss. [preprint], https://doi.org/10.5194/acp-2022-465, in review, 2022.
DOI: 10.5517/ccdc.csd.cc278sq1
title: CCDC 2064033: Experimental Crystal Structure Determination

description: Related Article: Tuo Jiang, Samuele Bordi, Angus E. McMillan, Kuang-Yen Chen, Fumito Saito, Paula L. Nichols, Benedikt M. Wanner, Jeffrey W. Bode|2021|Chemical Science|12|6977|doi:10.1039/D1SC01048D
DOI: 10.5517/ccdc.csd.cc278sr2
title: CCDC 2064034: Experimental Crystal Structure Determination

description: Related Article: Tuo Jiang, Samuele Bordi, Angus E. McMillan, Kuang-Yen Chen, Fumito Saito, Paula L. Nichols, Benedikt M. Wanner, Jeffrey W. Bode|2021|Chemical Science|12|6977|doi:10.1039/D1SC01048D
DOI: 10.5525/gla.researchdata.289
title: Human former seasonal Influenza A(H1N1) haemagglutination inhibition data 1977-2009 from the WHO Collaborating Centre for Reference and Research on Influenza, London, UK

description: In total, 48,707 HI titers measured between 29,600 unique combinations of virus and antiserum are included. Viruses were originally isolated from clinical specimens either by WHO National Influenza Centres or by the WHO Collaborating Centre for Reference and Research on Influenza, London, UK, now the Crick Worldwide Influenza Centre, The Francis Crick Institute, Mill Hill Laboratory, The Ridgeway, Mill Hill, London, NW7 1AA, UK. The HI dataset includes 506 former seasonal A(H1N1) viruses for which HA gene sequence data was matched, for which a table of GISAID Isolate IDs is included.
DOI: 10.6084/m9.figshare.19403852.v2
title: Peptidoglycan biosynthesis is driven by lipid transfer along enzyme-substrate affinity gradients

description: Raw Mass Spectrometry data and MD parameters for main figures and supplementary figures for the journal article "Peptidoglycan biosynthesis is driven by lipid transfer along enzyme-substrate affinity gradients"
DOI: 10.6084/m9.figshare.21521112
title: Effect of Planting Density on Root Biomass and Distribution, and Soil Organic Carbon Stock of Acacia decurrens stands in Northwestern Ethiopia

description: This dataset was created to evaluate the effect of planting density on the root biomass, soil organic carbon stock, and vertical distributions of Acacia decurrens stands in Northwestern Ethiopia using five planting densities (0.5m x 0.5m, 0.75m x 0.75m, 1m x 1, 1.25m x 1.25m, and 1.5m x 1.5m), which were replicated 4 times in randomized complete block design. This dataset includes experimental stand characteristics, coarse root biomass, fine root biomass, tree fine root biomass, herbaceous root biomass, live fine root biomass, dead fine root biomass (necrosis), soil organic carbon content and stock, and accordingly its vertical proportional distribution. It was created by taking about 100 soil cores (6.67 cm diameter) for fine root biomass (&lt;2 mm in diameter) and 100 pit (900 cm2 area) for coarse root (diameter &gt; 2 mm) within 0-50 cm soil depth (having five soil layers in 10 cm interval) during December 2019. All fine roots were separated as live and dead and further grouped as tree or herbaceous roots. The soil organic carbon content and stock were also determined using standard procedures of IPCC (2003). The root biomass data were standardized into gram per meter square (g m-2) for root biomass comparisons for each planting density and soil depth, then summed up for 0-50 cm depth as a total root biomass. The vertical distributions of fine and coarse root biomass at each depth were expressed as a percentage (in decimal) of the total root biomass (0-50 cm). Therefore, this dataset has created using standard scientific protocols to contribute for the scientific community on the effect of stand density on root biomass, soil organic carbon, and its vertical distribution in short rotation stands.
DOI: 10.6084/m9.figshare.21617358
title: Supplementary Material for: Clinical Outcomes of Patients with C3G or IC-MPGN Treated with the Factor D Inhibitor Danicopan: Final Results from Two Phase 2 Studies

description: <b><i>Introduction:</i></b> C3 glomerulopathy (C3G) is an ultrarare, chronic and progressive nephropathy mediated by dysregulation of the alternative pathway of complement (AP), with poor prognosis and limited treatment options. Targeted inhibition of proximal AP through factor D (FD) blockade represents a rational treatment approach. We present two phase 2 proof-of-concept clinical studies of the orally active FD inhibitor danicopan in patients with C3G and immune complex-mediated membranoproliferative glomerulonephritis (IC-MPGN) (NCT03369236 and NCT03459443). <b><i>Methods:</i></b> A double-blind, placebo-controlled study in patients with C3G and a single-arm, open-label study in patients with C3G or IC-MPGN treated with danicopan are reported. The studies evaluated pharmacokinetic/pharmacodynamic (PK/PD), efficacy, and safety outcomes. The co-primary endpoints were change from baseline in composite biopsy score and the proportion of patients with a 30% reduction in proteinuria relative to baseline at 6 or 12 months. <b><i>Results:</i></b> Optimal systemic concentrations of danicopan were not achieved for complete and sustained inhibition of AP, although there was evidence that blockade of FD reduced AP activity shortly after drug administration. Consequently, limited clinical response was observed in key efficacy endpoints. While stable disease or improvement from baseline was seen in some patients, response was not consistent. The data confirmed the favorable safety profile of danicopan. <b><i>Conclusion:</i></b> While demonstrating a favorable safety profile, danicopan resulted in incomplete and inadequately sustained inhibition of AP, probably due to limitations in its PK/PD profile in C3G, leading to lack of efficacy. Complete and sustained AP inhibition is required for a clinical response in patients with C3G.
DOI: 10.17189/1519446
title: MSL MARS SAMPLE ANALYSIS AT MARS 4 RDR LEVEL 1B V1.0
DOI: 10.18154/rwth-2020-09197
title: Dataset to "Easing the Conscience with OPC UA: An Internet-Wide Study on Insecure Deployments"

description: This is the dataset to "Easing the Conscience with OPC UA: An Internet-Wide Study on Insecure Deployments" [In ACM Internet Measurement Conference (IMC ’20)]. It contains our weekly scanning results between 2020-02-09 and 2020-08-31 complied using our zgrab2 extensions, i.e, it contains an Internet-wide view on OPC UA deployments and their security configurations. To compile the dataset, we anonymized the output of zgrab2, i.e., we removed host and network identifiers from that dataset. More precisely, we mapped all IP addresses, fully qualified hostnames, and autonomous system IDs to numbers as well as removed certificates containing any identifiers. See the README file for more information. Using this dataset we showed that 93% of Internet-facing OPC UA deployments have problematic security configurations, e.g., missing access control (on 24% of hosts), disabled security functionality (24%), or use of deprecated cryptographic primitives (25%). Furthermore, we discover several hundred devices in multiple autonomous systems sharing the same security certificate, opening the door for impersonation attacks. Overall, with the analysis of this dataset we underpinned that secure protocols, in general, are no guarantee for secure deployments if they need to be configured correctly following regularly updated guidelines that account for basic primitives losing their security promises.
DOI: 10.5441/002/edbt.2015.49
title: WAVEGUIDE: Evaluating SPARQL Property Path Queries
DOI: 10.34740/kaggle/dsv/4583016
title: LUFlow Network Intrusion Detection Data Set