cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8138045.v1
title: Dataset containing aggregate data from studies investigating treatments for pain in osteoarthritis

description: Two versions of a dataset of aggregate study-level results collected during a systematic review by Martin Boucher. Data have been cleaned and prepared by Hugo Pedder.<br>OsteoarthritisData.csv contains data from 23 RCTs that have conducted their analysis using Last Observation Carried Forward (LOCF) to deal with dropouts, comparing 29 treatments for pain relief in osteoarthritis. SDs are available at baseline for most studies but have been imputed for 269 out of 345 observations.<br>AugmentedInconsistencyData.csv contains the same data but with additional studies, as it does not restrict study analyses to only LOCF (30 RCTs in total comparing 29 treatments).
DOI: 10.17632/hdz96zts8j
title: ImageOP

description: The Image Dataset with Religious Buildings in the World Heritage Town of Ouro Preto for Deep Learning Classification (ImageOP).

This dataset comprises 1,613 images of facades from 32 religious buildings in the Historic Town of Ouro Preto, categorized into five classes: 

# Fronton (Frontão in Portuguese) (290 images): the upper part of religious buildings. 
# Church (Igreja in Portuguese) (353 images): class containing photographs of religious monuments featuring multiple building components in the same image. 
# Window (Janela in Portuguese) (341 images): images of windows (front or side) of religious buildings.
# Door (Porta in Portuguese) (292 images): images of doors (front or side) of religious buildings.
# Tower (Torre in Portuguese) (337 images): photographs of towers of religious buildings, typically featuring a bell.

The Historic Town of Ouro Preto was the first city in Brazil added to the World Heritage List of UNESCO in 1980. Currently, the Historic Town of Ouro Preto preserves several examples of religious and civic buildings in terms of design and materials used in the 18th and 19th centuries.
DOI: 10.17632/nybvz9wszj
title: Dataset for Master thesis

description: Датасет содержит список компаний, которые провели IPO в период с 2010 по 2024 годы, список облигаций таких компаний, их котировки, бенчмарки, а также расчёт аномальных доходностей для каждого событийного окна, Т-тесты и тесты Вилкоксона.
DOI: 10.4225/49/595c46bf6b5d0
title: Subsampled ONT reads

description: These files contain the ONT reads after subsampling based on length and quality.<br>The full set of basecalled, adapter trimmed and demultiplexed reads (no subsampling) are available in SRA:<br>SRR5665597, SRR5665596, SRR5665591, SRR5665590, SRR5665593, SRR5665592, SRR5665595, SRR5665594, SRR5665601, SRR5665600, SRR5665599, SRR5665598
DOI: 10.6084/m9.figshare.21975734.v1
title: LMMS-SP BERT-LARGE-CASED

description: Includes SP-USM and SP-WSD variants, at sensekey and synset level, and SVD-300d version.
DOI: 10.6084/m9.figshare.26862634.v1
title: Data for manuscript "Actin length in cellular adhesion and contractility"

description: Actin is essential for many cellular functions. In this study, we investigate how actin filament length modulates cell adhesion, cellular contractility, and cell migration. Here, we measure the actin stabilizing effect of miuraenamide A in MEF cells and analyze the size and number of focal adhesions in MEF and RPE-1 cells. Additionally, we measure the adhesion forces and contractile energy in RPE-1 cells after the treatment with miuraenamide A. Contrary to expectations, we find that longer actin filaments lead to an increased number of focal adhesions with smaller sizes. Single-cell force spectroscopy shows reduced adhesion energy and force in RPE-1 cells with stabilized actin filaments, while contractile energy measurements do not show a significant change. Interestingly, the already reported reduction in mesenchymal migration parameters does not hold when we place RPE-1 cells and neutrophils in an environment that only allows amoeboid migration. Taken together, we hereby show that the length of actin filaments does alter specific migration parameters, but not migration per se. Importantly, it does affect cell adhesion to the underlying substrate which matters for adhesion-based migration. Therefore, we conclude that actin filament length affects mesenchymal but not amoeboid migration.
DOI: 10.6084/m9.figshare.28628156.v1
title: Annotation files for whole genome assembly of<i> Aspergillus toxicus</i>

description: Genome annotation files for whole genome assembly of Aspergillus toxicus produced by maker.
DOI: 10.6084/m9.figshare.3513029.v1
title: Appendix E. Estimates of bird species richness per area, using sample-based rarefaction, and species richness estimators (the incidence-based coverage estimator [ICE] and the Chao2 estimator) in addition to the numbers of uniques and duplicates.

description: Estimates of bird species richness per area, using sample-based rarefaction, and species richness estimators (the incidence-based coverage estimator [ICE] and the Chao2 estimator) in addition to the numbers of uniques and duplicates.
DOI: 10.6084/m9.figshare.5146360.v2
title: A Bayesian Survival Analysis of a Historical Dataset: How Long Do Popes Live?

description: University courses in statistical modeling often place great emphasis on methodological theory, illustrating it only briefly by means of limited and repeatedly used standard examples. Unfortunately, this approach often fails to actively engage and motivate students in their learning process. The teaching of statistical topics such as Bayesian survival analysis can be enhanced by focusing on innovative applications. Here, we discuss the visualization and modeling of a dataset of historical events comprising the post-election survival times of popes. Inference, prediction, and model checking are performed in the Bayesian framework, with comparisons being made with the frequentist approach. Further opportunities for similar statistical investigations are outlined. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.8159165.v1
title: Pollen stack

description: A sample of pollen, imaged with a Nikon A1 confocal microscope, with excitation wavelength 488 nm, 40x/1.2 water immersion objective and GaAsP detector. Due to custom intermediate optics on the illumination/detection path, the objective was underfilled, to produce an effective NA of approximately 0.5-0.6. Image size is 512x512x181 and voxel size 78x78x250 nm (x,y,z).
DOI: 10.17632/fz3g435rgy
title: La gestión del riesgo cardiovascular en Santander

description: Introducción: La hipertensión arterial es el principal factor de riesgo para enfermedad cardiovascular, observándose bajas tasas de control en diferentes países sobre todo en aquellos de medianos y bajos ingresos. En el sistema de salud colombiano, la responsabilidad para el control de la enfermedad es compartida entre los actores institucionales, por lo que se hace necesario conocer sus percepciones. 
Objetivo: Interpretar los facilitadores (y barreras) para la implementación de estrategias comunitarias para el control de la Hipertensión arterial, desde la percepción de los actores institucionales del sistema de salud del Departamento de Santander, 2023.
Metodología: Estudio cualitativo, diseño fenomenológico e interpretativo, con el desarrollo de grupos focales con actores del sistema: entes territoriales, aseguradores y prestadores. Los grupos se realizaron entre diciembre de 2022 y febrero de 2023. Las reuniones fueron grabadas y transcritas el complemento NVivo Transcription y analizadas con el software Nvivo Versión 1.6.1 
Resultados: Se identificaron siete categorías emergentes, con mayor repetición de referencias en las categorías de Estrategias, recursos y articulación. 
Conclusión: Se debe mejorar la articulación de actores institucionales, en relación con las actividades implícitas de la Ruta de atención para la prevención de Enfermedad Cardiovascular y las formas de contratación de la prestación de servicios, con el ánimo de mejorar el acceso a las consultas médicas y por otros profesionales, la entrega de medicamentos, el monitoreo de factores de riesgo biológicos, modificación de estilos de vida.
Palabras clave: Hipertensión arterial, barreras de atención, comunidad, estrategías, intervención.
DOI: 10.17632/g99pjp4xhb
title: Supplementary data for manuscript on metabolite dataset of plants from heavy metal-contaminated and uncontaminated soils analysed by GC-MS

description: Raw and processed data sets and mass spectra of plant metabolites from heavy metal-contaminated and uncontaminated soils analyzed by GC-MS
DOI: 10.17632/ytm63884d9
title: Discrete Choice Study Data on Financing Electricity Access in Africa

description: CSV data from a survey administered in Accra, Ghana. Altogether about 250 paper-based questionnaires were administered. Two hundred and one questionnaires were obtained in all corresponding to an 80% response rate.
DOI: 10.6084/m9.figshare.12145236.v1
title: Jerash Silver Scroll: Virtually Unfolded Volume

description: A new virtual unfolding technique was applied to a silver scroll excavated in Jerash, Jordan, in 2014. As result of the unfolding, 17 lines of writing are clearly visible in the unfolded volumetric data that is published here.<br>The original micro-CT data was published in the following reference: Lichtenberger, Achim; Raja, Rubina (2020): Jerash Silver Scroll: Computed Tomography Data. figshare. Dataset. https://doi.org/10.6084/m9.figshare.12136380.v1
DOI: 10.6084/m9.figshare.16778731.v2
title: SUPPLEMENTAL DATA

description: Supplemental Tables 1-7<br>
DOI: 10.6084/m9.figshare.27694926.v1
title: Host and symbiont rRNA databases

description: rRNA reads were identified and filtered out using SortMeRNA v4.3.4 (Kopylova et al. 2012) by aligning reads against the sensitive database and these custom databases containing <i>C. galapagana</i> and lucinid symbiont rRNA sequences
DOI: 10.6084/m9.figshare.4525082.v1
title: A data set with kinematic and ground reaction forces of human balance

description: This data set comprises data with the three-dimensional kinematics of the whole body and the ground reaction forces (with a dual force platform setup) of subjects standing still for 60 s in different conditions where vision and the standing surface were manipulated. Twenty-seven young subjects and 22 old subjects were evaluated.The data set comprises a file with meta data plus 1813 files with the ground reaction force and kinematics data for the 49 subjects (3 files for each of the 12 trials plus one file for each subject). The file with meta data has information about the subject’s sociocultural, demographic, and health characteristics.A companion Jupyter Notebook (available at https://github.com/demotu/datasets/tree/master/PDS) presents the programming code to generate such analyses and other examples.<br>
DOI: 10.6084/m9.figshare.5110732.v1
title: Fraxinus excelsior chorology

description: Distribution map of European ash (<i>Fraxinus excelsior</i>)<br><br>These maps were produced by combining numerous and heterogeneous data collected from atlas monographs providing complete species distribution maps, from national to regional atlases, occurrence geodatabases and scientific literature.<br>The maps were created using ESRI shapefiles (*.shp, *.shx, *.dbf, *.prj files) archived in the ZIP file. Species range is mapped with polygon features (name suffix “plg”), which define continuous areas of occupancy of the species, and with point features (name suffix “pnt”), which identify more fragmented and isolated populations. If synanthropic occurrences are reported outside the species natural range, additional point and/or polygon shapefiles are also present (suffix “syn”).<br>All polygon borders delimiting the range are generalized across the mainland and sea boundaries, and not clipped to a specific coastline. This offers the possibility to mask sea areas, or to clip and extract the terrestrial range parts using GIS data layers of the users’ choice. <br><br>Please cite as:<br>Caudullo, G., Welk, E., San-Miguel-Ayanz, J., 2017. Chorological maps for the main European woody species. Data in Brief 12, 662-666. DOI: doi.org/10.1016/j.dib.2017.05.007 <br><br>Additional information and used references are on 'supplementary materials' document:<br>https://doi.org/10.6084/m9.figshare.5091901<br><br>Chorological maps are part of the "European Atlas of Forest Tree Species" project:<br>https://w3id.org/mtv/FISE-Comm/v01
DOI: 10.6084/m9.figshare.1249805.v1
title: A comprehensive map of genome-wide gene regulation in Mycobacterium tuberculosis

description: Mycobacterium tuberculosis (MTB) is a pathogenic bacterium responsible for 12 million active cases of tuberculosis (TB) worldwide. The complexity and critical regulatory components of MTB pathogenicity are still poorly understood despite extensive research efforts. In this study, we constructed the first systems-scale map of transcription factor (TF) binding sites and their regulatory target proteins in MTB. We constructed FLAG-tagged overexpression constructs for 206 TFs in MTB, used ChIP-seq to identify genome-wide binding events and surveyed global transcriptomic changes for each overexpressed TF. Here we present data for the most comprehensive map of MTB gene regulation to date. We also define elaborate quality control measures, extensive filtering steps, and the gene-level overlap between ChIP-seq and microarray datasets. Further, we describe the use of TF overexpression datasets to validate a global gene regulatory network model of MTB and describe an online source to explore the datasets. Overall, we provide evidence that these datasets are an invaluable regulatory catalogue that can be used to drive a systems understanding of MTB pathogenicity.
DOI: 10.6084/m9.figshare.12678938.v1
title: Source Data for "Defining the ATPome Reveals Cross-Optimization of Metabolic Pathways"

description: Disrupted energy metabolism drives cell dysfunction and disease, but approaches to increase or preserve ATP are lacking. To generate a comprehensive metabolic map of genes and pathways that regulate cellular ATP — the ATPome — we conducted a genome-wide CRISPR interference/activation screen integrated with an ATP-biosensor. We show that ATP level is modulated by distinct mechanisms that promote energy production or inhibit consumption. Surprisingly, in our system HK2 is the greatest ATP consumer , indicating energy failure may not be a general deficiency in producing ATP, but rather failure to recoup the ATP cost of glycolysis and diversion of glucose metabolites to the pentose phosphate pathway. We identify systems-level reciprocal inhibition between the HIF1 pathway and mitochondria; glycolysis-promoting enzymes inhibit respiration even when there is no glycolytic ATP production, and vice versa. Consequently, suppressing alternative metabolism modes paradoxically increases energy levels under substrate restriction. This work reveals mechanisms of metabolic control, and identifies therapeutic targets to correct energy failure. This Source Data file contains source data and statistics for the figures of this manuscript.
DOI: 10.6084/m9.figshare.14370434.v2
title: Parental Attitudes towards School and Adolescents’ Academic Performance: The Mediating Role of Psychological Suzhi and the Moderating Role of Family SES

description: To explore the relationships between parents’ attitudes towards school and adolescents’ family socioeconomic status (SES), psychological <i>suzhi</i>, and academic performance, we investigated a total of 1319 middle school students from junior grade 1 to senior grade 3 and their parents. The Psychological <i>Suzhi</i> Questionnaire for Adolescents (simplified version) was self-reported by students. Family SES and parental attitudes towards school were rated by one of the parents of the adolescents. The academic performance was collected from the final examination at school at the end of the semester.
DOI: 10.6084/m9.figshare.14534076.v1
title: Supplementary Material for: Clinical Characteristics of Chinese Male Patients with Aquaporin-4 Antibody-Positive Late-Onset Neuromyelitis Optica Spectrum Disorder

description: <b><i>Background and Objective:</i></b> Limited studies are available for male patients with anti-aquaporin-4 antibody (AQP4-Ab)-positive late-onset neuromyelitis optica spectrum disease (LONMOSD). The aim of this study was to investigate the clinical characteristics of Chinese male patients with AQP4-Ab-positive LONMOSD. <b><i>Methods:</i></b> We retrospectively reviewed the medical records of 12 male patients with LONMOSD, 16 male patients with early-onset NMOSD (EONMOSD), and 64 female patients with LONMOSD. These enrolled patients were classified according to the age of onset: LONMOSD (≥50 years of age at onset) versus EONMOSD (&lt;50 years of age at onset). Clinical characteristics and magnetic resonance imaging (MRI) findings were collected. All included patients were positive for AQP4 antibody. <b><i>Results:</i></b> Compared with female LONMOSD patients, male LONMOSD patients had less frequent transverse myelitis (TM) at onset (8.33 vs. 53.13%, <i>p</i> = 0.004) and lower Expanded Disability Status Scale (EDSS) scores (median 1 vs. 4, <i>p</i> = 0.036). Compared with male EONMOSD patients, male LONMOSD patients had a shorter time from onset to diagnosis (0.85 months vs. 6.00 months, <i>p</i> = 0.04). <b><i>Conclusion:</i></b> Less common TM at onset, less disease severity, and shorter time from onset to diagnosis probably occur in male LONMOSD patients.
DOI: 10.6084/m9.figshare.25902130.v1
title: Germline missense MSH6 VUS - 1

description: Molecular dynamics simulation of the VUS based on the ClinVar database, the simulation is up to 100 ns.
DOI: 10.6084/m9.figshare.27600252.v1
title: Dataset and code

description: Related to the paper 'Spatio-Temporal Dynamics and Climate Change Scenarios Forecast of Dengue Incidence in Brazil'. Preprint available at: https://doi.org/10.1101/2024.07.22.24310334<br><br>This repository contains:<br>'dataset.csv': The database used for running the models in the cited paper.'data_dictionary.csv': The dictionary for the 'data.csv' file.<br><br>'models_script.R': outlining the commands and steps required for model construction, forecasting future outcomes, and conducting cross-validation metrics.
DOI: 10.17632/t72h4vwv8h
title: Feedback literacy de alumnos universitarios: revisión sistemática y síntesis cualitativa

description: Apéndice en línea del artículo Feedback literacy de alumnos universitarios: revisión sistemática y síntesis cualitativa (en prensa). 
Contiene: 1) Datos de análisis (tablas)  y referencias bibliográficas incluidas en la revisión sistemática.

Resumen del artículo: 
El feedback tiene un enorme potencial para mejorar el aprendizaje de los alumnos. Sin embargo, permanece como un potencial no realizado por diferentes factores. Entre los relacionados con los alumnos, se han señalado la falta de habilidades necesarias para recibir, interpretar y utilizar el feedback. Ese conjunto de habilidades se conoce como feedback literacy y es necesario para aprovechar todo el potencial del feedback. Este trabajo tiene como objetivo alcanzar una mejor comprensión del concepto de feedback literacy y extraer información sobre cómo desarrollar y potenciarla en los estudiantes. Para ello hemos llevado a cabo una revisión sistemática y una síntesis cualitativa de la literatura empírica disponible. Este concepto aparece como una competencia situada, multidimensional y emergente. La forma más apropiada para desarrollarla es involucrar a los alumnos en prácticas de evaluación participativa y ofrecer formación explícita sobre feedback y sobre las diferentes microhabilidades que la integran. Dado que estamos ante un tema de investigación reciente, señalamos la conveniencia de establecer qué funciona, para qué tipo de alumnos y bajo qué circunstancias a la hora de mejorar la feedback literacy. 

Palabras clave: feedback literacy; evaluación formativa; retroalimentación; educación superior
DOI: 10.5522/04/24039384.v1
title: Cell growth profile of Escherichia coli BL21 in various pH values (pH 7.00 to 10.00, 0.25 increment, in LB with three different buffers)

description: This dataset was generated on 16th March 2023 as Appendix A for the BENG0046 project entitled "Development of automatic and miniaturized continuous cell culture system for improvement of cellular strains". <br> The raw dataset of Escherichia coli BL21 growth at 37 C in pH-modified LB media (MOPS: pH 7.00, 7.25, 7.50, 7,75 / TRIS: 8.00, 8.25, 8.50, 8,75 / CAPSO: 9.00, 9.25, 9.50, 9,75, and 10.00). The samples were measured by OD<sub>600</sub> for 72 hours, every 5 minutes, in CLARIOstar Plus microplate reader.
DOI: 10.6084/m9.figshare.19544056.v4
title: In tube condensation heat transfer and pressure drop for R454B and R32_potential replacements for R410A_Data.xlsx

description: This data set accompanies the paper titled " In Tube Condensation Heat Transfer and Pressure Drop for R454B and R32--Potential Replacements for R410A" to be published in the International Journal of Refrigeration. The data set contains the test conditions for these refrigerants and the corresponding results that are reported in the paper.
DOI: 10.6084/m9.figshare.27192921.v8
title: low light image enhancement datasets

description: The LOL, LOLv2-Real, LSRW, DICM, LIME, MEF and NPE datasets can be acquired from the following links
DOI: 10.6084/m9.figshare.17430068.v1
title: Supplementary Material for: Prediction of Acute COPD Exacerbation in the Swiss Multicenter COPD Cohort Study (TOPDOCS) by Clinical Parameters, Medication Use, and Immunological Biomarkers

description: <b><i>Background and Objective:</i></b> Whether immunological biomarkers combined with clinical characteristics measured during an exacerbation-free period are predictive of acute exacerbation of chronic obstructive pulmonary disease (AECOPD) frequency and severity is unknown. <b><i>Method:</i></b> We measured immunological biomarkers and clinical characteristics in 271 stable chronic obstructive pulmonary disease (COPD) patients (67% male, mean age 63 years) from “The Obstructive Pulmonary Disease Outcomes Cohort of Switzerland” cohort on a single occasion. One-year follow-up data were available for 178 patients. Variables independently associated with AECOPD frequency and severity were identified by multivariable regression analyses. Receiver operating characteristic analysis was used to obtain optimal cutoff levels and measure the area under the curve (AUC) in order to assess if baseline data can be used to predict future AECOPD. <b><i>Results:</i></b> Higher number of COPD medications (adjusted incident rate ratio [aIRR] 1.17) and platelet count (aIRR 1.03), and lower FEV<sub>1</sub>% predicted (aIRR 0.84) and IgG2 (aIRR 0.84) were independently associated with AECOPD frequency in the year before baseline. Optimal cutoff levels for experiencing frequent (&gt;1) AECOPD were ≥3 COPD medications (AUC = 0.72), FEV<sub>1</sub> ≤40% predicted (AUC = 0.72), and IgG2 ≤2.6 g/L (AUC = 0.64). The performance of a model using clinical and biomarker parameters to predict future, frequent AECOPD events in the same patients was fair (AUC = 0.78) but not superior to a model using only clinical parameters (AUC = 0.79). The IFN-lambda rs8099917GG-genotype was more prevalent in patients who had severe AECOPD. <b><i>Conclusions:</i></b> Clinical and biomarker parameters assessed at a single point in time correlated with the frequency of AECOPD events during the year before and the year after assessment. However, only clinical parameters had fair discriminatory power in identifying patients likely to experience frequent AECOPD.