cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.v52dp25
title: Data from: Multifractal evidence of nonlinear interactions stabilizing posture for phasmids in windy conditions: a reanalysis of insect postural-sway data

description: The present work is a reanalysis of prior work documenting postural sway
 in phasmids (i.e., “stick insects”) [1]. The prior work pursued the
 possibility that postural sway was an evolutionary adaptation supporting
 motion camouflage to avoid the attention of predators. For instance,
 swaying along with leaves blown by the wind might reduce the likelihood of
 standing out to a predator. The present work addresses the alternative—but
 by no means conflicting and perhaps more explanatory—proposal that phasmid
 postural sway carries evidence of the tensegrity-like structures allowing
 postural stabilization under wind-like stimulation. Tensegrity structures
 are prestressed architectures embodying nonlinear interactions across
 scales of space and time that provide context-sensitive responses faster
 than neural tissue can support. Multifractal modeling of the
 postural-displacement series initially recorded in [1] offers a metric
 equally effective for quantifying complexity of phasmid postural sway
 under wind stimulation as for quantifying complexity of human postural
 sway [2-7]. Furthermore, multifractal modeling offers a means to
 demonstrate empirically the nonlinear interactions across space and time
 scales in body-wide coordination that tensegrity-based hypotheses predict.
 Specifically, multifractal modeling allows diagnosing the strength and
 direction of nonlinear interactions across time scale as the difference
 between multifractal estimates for the original postural-displacement
 series and for a sample of best-fitting linear models of the series. The
 reduction of postural sway directly following the application of wind
 stimulus appears as a significant decrease in the multifractal structure
 for original postural-displacement series as compared to best-fitting
 linear models of those series. This decrease indicates the capacity for
 nonlinear interactions across time scale to constrict variability, which
 is an aspect of nonlinear dynamics often overshadowed by the possibility
 that nonlinearity can produce more variability. This work offers the
 longer-range opportunity that multifractal modeling could provide a common
 language within which to coordinate behavioral sciences across a wide
 range of species.
description: snowWindNowind_dataMatlab file, openable in R using library {R.matlab} and function readMat(). For instance: readMat("snowWindNowind_data.mat")dataPerson-period data file containing phasmid number (Sub), condition (Cond = 1 encoding Wind; Cond = 2 encoding No-Wind), number of 1000-frame block (Block), Chhabra-Jensen multifractal-spectrum width for 1000-frame block of postural-displacement series (W), width due to nonlinearity for 1000-frame block of postural-displacement series (t), Chhabra-Jensen multifractal-spectrum width for entire postural-displacement series (AllW), width due to nonlinearity for entire postural-displacement series (Allt)
DOI: 10.5061/dryad.6f5k585
title: Data from: The associations of presence or absence of exercise and/or physical activity with non-restorative sleep by gender and age: a cross-sectional study.

description: Objectives: Non-restorative sleep (NRS) is related to qualitative aspects
 of sleep. The associations of NRS with exercise (EX; a planned and
 purposeful activity) and physical activity (PA; daily bodily movement) by
 gender and age has not yet been clarified. We investigated the
 associations of EX and/or PA with NRS by gender and age. Design: A
 cross-sectional study. Setting: The data on gender, age, presence of NRS,
 and engagement in EX and/or PA were obtained from database and
 questionnaire of specified medical checkups in FY 2013 in Japan. The
 analysis was conducted in 2017. Participants: The subjects comprised
 90,122 residents (38,603 males and 51,519 females), aged 40 to 74 years,
 who had completed the specified medical checkups. Outcome measure: The
 presence of NRS was assessed using a question asking whether or not the
 subjects usually got enough sleep. NRS was considered to be present when
 the subjects answered “No”. Binary logistic regression analysis was used
 to assess the associations of presence or absence of EX and/or PA with
 NRS. The OR and 95% CI of NRS prevalence were calculated and compared
 between those engaged in both EX and PA and the others. Results: Except
 for 40s and 70s among males and 40s and 50s among females, the absence of
 EX or PA was associated with higher ORs of NRS than referent. ORs were
 more than twice compared to the referents in males in their 50s (OR 2.030
 [95% CI 1.675, 2.459]) and 60s (OR 2.148 [95% CI 1.970, 2.343]) and
 females in their 60s (OR 2.142 [95% CI 1.994, 2.302]) when they engaged in
 neither EX nor PA. Conclusions: health care providers must take into
 account the similarities and differences in the associations of EX and/or
 PA with NRS by gender and age when they support people with NRS.
description: The effect of presence
 or absence of exercise and/or physical activity on non-restorative sleep
 on BMJ OpenThis dataset is used in
 manuscript entitled "The effect of presence or absence of exercise
 and/or physical activity on non-restorative sleep by gender and age: a
 cross-sectional study" on BMJ Open in review. All variables used in
 the manuscript is included in this dataset, such as participants'
 gender, age (age group), engagement in exercise, engagement in physical
 activity, sleep quality (presence of non-restorative sleep) and so
 on.kokuhoren_dryad.csv
DOI: 10.5061/dryad.67040d1
title: Data from: Functional divergence of a heterochromatin-binding protein during stickleback speciation

description: Intragenomic conflict, the conflict of interest between different genomic
 regions within an individual, is proposed as a mechanism driving both the
 rapid evolution of heterochromatin-related proteins and the establishment
 of intrinsic genomic incompatibility between species. Although molecular
 studies of laboratory model organisms have demonstrated the link between
 heterochromatin evolution and hybrid abnormalities, we know little about
 their link in natural systems. Previously, we showed that F1 hybrids
 between the Japan Sea stickleback and the Pacific Ocean stickleback show
 hybrid male sterility and found a region responsible for hybrid male
 sterility on the X chromosome, but did not identify any candidate genes.
 In this study we first screened for genes rapidly evolving under positive
 selection during the speciation of Japanese sticklebacks to find genes
 possibly involved in intragenomic conflict. We found that the region
 responsible for hybrid male sterility contains a rapidly evolving gene
 encoding a heterochromatin-binding protein TRIM24B. We conducted
 biochemical experiments and showed that the binding affinity of TRIM24B to
 a heterochromatin mark found at centromeres and transposons, histone H4
 lysine 20 trimethylation (H4K20me3), is reduced in the Japan Sea
 stickleback. In addition, mRNA expression levels of Trim24b were different
 between the Japan Sea and the Pacific Ocean testes. Further expression
 analysis of genes possibly in the TRIM24B-regulated pathway showed that
 some gypsy retrotransposons are overexpressed in the F1 hybrid testes. We
 therefore demonstrate that a heterochromatin-binding protein can evolve
 rapidly under positive selection and functionally diverge during
 stickleback speciation.
description: GO
 Enrichment_testR Script for GO
 enrichment test with a hypergeometic test.Enrichment_test.Rmart83_GO_compiledStickleback GO term downloaded from Ensembl.
DOI: 10.5061/dryad.km3n6t4
title: Data from: Anodic behaviour of Cu, Zr and Cu-Zr alloy in molten LiCl-KCl eutectic

description: The anodic dissolution behaviours of Cu, Zr and Cu–Zr alloy were analysed
 in LiCl–KCl at 500°C by anode polarization curve and potentiostatic
 polarization curve. The results show that the initial and fast-dissolving
 potentials of Cu are −0.50 and −0.29 V, and Zr are −1.0 and −0.88 V,
 respectively. But, in the Cu–Zr alloy, the initial and fast-dissolving
 potentials of Cu are −0.52 and −0.41 V, and Zr are −0.96 and −0.92 V,
 respectively. The potentials satisfy the selection dissolution principle
 that Zr in the alloy dissolves first, while Cu is left in the anode and is
 not oxidized. The passivation phenomenon of Zr is observed in the quick
 dissolution of Zr, while it is not observed in the Cu–Zr alloy. Moreover,
 from the above anodic dissolution results, potentiostatic electrolysis of
 Cu–Zr alloy was carried out at −0.8 V for 40 min, and the anodic
 dissolution mechanism and kinetics of Zr in Cu–Zr alloy were also
 discussed. In the initial stage, Zr dissolves as Zr4+ ions from the alloy
 surface and enters into the molten salt, leaving a Cu layer called
 ‘dissolving layer’ on the surface of the alloy. After that, another layer
 between the matrix and ‘dissolving layer’ called ‘diffusion–dissolution
 layer’ appears. Zr diffuses in the alloy matrix and dissolves as Zr4+ ions
 on the surface of the ‘diffusion–dissolution layer’ continuously, and Zr4+
 ions diffuse through the ‘dissolving layer’ and enter into the molten salt
 finally. In addition, the factors affecting the dissolution of Cu–Zr
 alloy, such as time and potential, were also investigated. The dissolution
 loss increases with the increasing dissolution potential and time, while
 the dissolution rate increases with the increasing dissolution potential
 and declines with the prolonging dissolution time.
description: Data of the Figures in
 the Main TextData of the figures in
 the main textDate of the Figures in the main
 Text.xlsReadme-Electronic
 supplementary materialReadme--Electronic
 supplementary materialElectronic supplementary
 material .rar
DOI: 10.5061/dryad.5pt8nt8
title: Data from: Genetic homogeneity of North-African goats

description: North Africa represents a rich and early reservoir of goat genetic
 diversity, from which the main African breeds have been derived. In this
 study, the genetic diversity of four indigenous Algerian goat breeds
 (i.e., Arabia, Makatia, M’Zabite and Kabyle, with n = 12 for each breed)
 has been investigated for the first time by genome-wide SNP genotyping;
 moreover in a broader context, genetic structuration of Algerian and
 Moroccan goats was explored (via FST, MDS, STRUCTURE, FineSTRUCTURE, BAPS,
 sPCA and DAPC analyses). At national level, the study revealed high level
 of genetic diversity and a significant phenomenon of admixture affecting
 all the Algerian breeds. At broader scale, clear global genetic
 homogeneity appeared considering both Algerian and Moroccan stocks.
 Indeed, genetic structuration was almost nonexistent among Arabia (from
 Algeria), Draa, Black and Nord (from Morocco), while the ancestral Kabyle
 and M’Zabite breeds, reared by Berber peoples, showed genetic
 distinctness. The study highlighted the threat to the Maghrebin stock,
 probably induced by unsupervised cross-breeding practices which have
 intensified in recent centuries. Moreover, it underlined the necessity to
 deepen our understanding of the genetic resources represented by the
 resilient North-African goat stock.
description: Algerian goat genotypes
 (.ped file)Genotypes obtained with
 the Illumina GoatSNP50K Genotyping BeadChip (genotype files) for four
 Algerian goat breeds (AR=Arabia, MZ=M'Zabite, MK=Makatia, NK=Kabyle)
 in a Plink format.AlgerianGoat.pedAlgerian goat genotypes (.map file)Genotypes obtained with the Illumina GoatSNP50K Genotyping BeadChip (markers files by chromosomes) for four Algerian goat breeds in a Plink format.AlgerianGoat.map
DOI: 10.5061/dryad.b7r2510
title: Data from: A novel in-situ stress measurement method based on acoustic emission kaiser effect: a theoretical and experimental study

description: Measurement of in-situ stress is critical to understand the deformation
 and destruction of the underground space surrounding rock, and dynamic
 disaster of the coal mine. At present, with the increasing depth of
 mining, in-situ stress parameters is more and more important for coal
 mine. In this paper, a novel method for in-situ stress measurement with
 Kaiser effect was studied and applied in the Baijiao coal mine. First, we
 presented a comprehensive analysis method for the identification of Kaiser
 effect point. Then, a calculation method for in-situ stress measurement
 based on the Kaiser effect on acoustic emissions (AE) was suggested. After
 that, the in-situ stress test of Baijiao coal mine is taken as the
 research object, an experiment using AE monitoring during uniaxial
 compression testing (UCT) was performed to investigate the mechanical
 properties and AE characteristics. Finally, in-situ stress of the study
 area was calculated using the novel calculation method above and
 calculation results were verified using stress relief method and hydraulic
 fracturing method. The results showed that the calculation results
 obtained using the proposed method were valid and credible. Therefore, the
 calculation method for in-situ stress measurement and the proposed
 comprehensive analysis method using the Kaiser point could be applied for
 in-situ stress testing using the AE Kaiser effect method.
description: UCT and AE test
 dateAxial loading
 time-stress-strain test data and time-acoustic emission
 data
DOI: 10.5061/dryad.8403km4
title: Data from: Tracking of host defenses and phylogeny during the radiation of Neotropical Inga-Feeding sawflies (Hymenoptera; Argidae)

description: Coevolutionary theory has long predicted that the arms race between plants
 and herbivores is a major driver of host selection and diversification. At
 a local scale, plant defenses contribute significantly to the structure of
 herbivore assemblages and the high alpha diversity of plants in tropical
 rain forests. However, the general importance of plant defenses in host
 associations and divergence at regional scales remains unclear. Here, we
 examine the role of plant defensive traits and phylogeny in the evolution
 of host range and species divergence in leaf-feeding sawflies of the
 family Argidae associated with Neotropical trees in the genus Inga
 throughout the Amazon, the Guiana Shield and Panama. Our analyses show
 that the phylogenies of both the sawfly herbivores and their Inga hosts
 are congruent, and that sawflies radiated at approximately the same time,
 or more recently than their Inga hosts. Analyses controlling for
 phylogenetic effects show that the evolution of host use in the sawflies
 associated with Inga is better correlated with Inga chemistry than with
 Inga phylogeny, suggesting a pattern of delayed host tracking closely tied
 to host chemistry. Finally, phylogenetic analyses show that sister species
 of Inga-sawflies are dispersed across the Neotropics, suggesting a role
 for allopatric divergence and vicariance in Inga diversification. These
 results are consistent with the idea that host defensive traits play a key
 role not only in structuring the herbivore assemblages at a single site,
 but also in the processes shaping host association and species divergence
 at a regional scale.
description: Beast header file for
 Inga species tree analysisBeast header file for
 Inga species tree analysis that includes specific sample
 namesInga_spp.txtlocus5 nexus alignmentNexus format alignment for locus 5, Aminocyclopropanecarboxylate oxidase (see Table S3)locus5.nexuslocus7 nexus alignmentNexus format alignment for locus 7, Trans-cinnamate 4-monooxygenase. See Table S3locus7.nexuslocus15 nexus alignmentNexus format alignment for locus 15, 3-oxoadipate enol-lactonase. See Table S3locus15.nexuslocus33 nexus format alignmentNexus format alignment for locus 33, Vinorine synthase. See Table S3locus33.nexuslocus38 nexus format alignmentNexus format alignment for locus 38 2'-hydroxyisoflavone reductase. See Table S3locus38.nexuslocus40 nexus alignmentNexus format alignment for locus 40, Trans-cinnamate 4-monooxygenase. See Table S3locus40.nexuslocus43 nexus alignmentNexus format alignment for locus 43, 1-deoxy-D-xylulose-5-phosphate reductoisomerase. See Table S3locus43.nexuslocus45 nexus alignmentNexus format alignment for locus 45, Glyoxylate reductase (NADP(+)). See Table S3locus45.nexuslocus47 nexus alignmentNexus format alignment for locus 47, Non-specific serine/threonine protein kinase. See Table S3locus47.nexuslocus50 nexus alignmentNexus format alignment for locus 50, Strictosidine synthase. See Table S3locus50.nexus
DOI: 10.5281/zenodo.18348130
title: INRIM_Brand1_1F_1_23C_0k_EDLC_single

description: MetSuperCap Project Dataset 1F SC sample 1 INRIM   - EDLC Single - Brand1

Part of the Constant Temperature DataBase
DOI: 10.5281/zenodo.18348131
title: INRIM_Brand1_1F_1_23C_0k_EDLC_single

description: MetSuperCap Project Dataset 1F SC sample 1 INRIM   - EDLC Single - Brand1

Part of the Constant Temperature DataBase
DOI: 10.5061/dryad.s23g7bc
title: Data from: Spatio-temporally explicit model averaging for forecasting of Alaskan groundfish catch

description: (1) Fisheries management is dominated by the need to forecast catch and
 abundance of commercially and ecologically important species. The
 influence of spatial information and environmental factors on forecasting
 error is not often considered. We propose a forecasting method called
 spatio-temporally explicit model averaging (STEMA) to combine spatial and
 temporal information through model averaging. (2) We examine the
 performance of STEMA against two popular forecasting models and a modern
 spatial prediction model: the autoregressive integrated moving averages
 (ARIMA) model, the Bayesian hierarchical model, and the varying
 coefficient model. We focus on applying the methods to four species of
 Alaskan groundfish for which only catch data are available. (3) Our method
 reduces forecasting errors significantly for most of the tested models
 when compared to ARIMAX, Bayesian, and varying coefficient methods. We
 also consider the effect of sea surface temperature (SST) on the
 forecasting of catch, as multiple studies reveal a potential influence of
 water temperature on the survival and growth of juvenile groundfish. For
 most of the preferred models, inclusion of SST in the model improved
 forecasting of catch. (4) It is advisable to consider both spatial
 information and relevant environmental factors in forecasting models to
 obtain more accurate projections of population abundance. The STEMA method
 is capable of accounting for spatial information in forecasting and can be
 applied to various types of data because of its flexible varying
 coefficient model structure. It is therefore a suitable forecasting method
 for application to many fields including ecology, epidemiology, and
 climatology.
description: stema_dataContains groundfish catch per unit effort (CPUE), lagged coefficient of variation of winter (Nov-Apr) sea surface temperatures (SST) from one to five years, location (lat, lon) and year of measurements.
DOI: 10.5061/dryad.hb0338g
title: Data from: A mitochondrial progesterone receptor increases cardiac beta-oxidation and remodeling

description: Progesterone is primarily a pregnancy related hormone, produced in
 substantial quantities after ovulation and during gestation. Traditionally
 known to function via nuclear receptors for transcriptional regulation
 there is also evidence of non-nuclear action. A previously identified
 mitochondrial progesterone receptor (PR-M) increases cellular respiration
 in cell models. In these studies, we demonstrated that expression of PR-M
 in rat H9c2 cardiomyocytes resulted in a ligand-dependent increase in
 oxidative cellular respiration and beta-oxidation. Cardiac expression in a
 TET-On transgenic mouse resulted in gene expression of myofibril proteins
 for remodeling and proteins involved in oxidative phosphorylation and
 fatty acid metabolism. In a model of increased afterload from constant
 transverse aortic constriction (cTAC), mice expressing PR-M showed a
 ligand-dependent preservation of cardiac function. From these
 observations, we propose that PR-M is responsible for progesterone-induced
 increases in cellular energy production and cardiac remodeling to meet the
 physiological demands of pregnancy.
description: SupplementalSupplemental methods, data and result
DOI: 10.5061/dryad.jb4mq7s
title: Data from: Metabolism studies of paeoniflorin in rat liver microsomes by ultra-performance liquid chromatography coupled with hybrid quadrupole time-of-flight mass spectrometry (UPLC-Q-TOF-MS/MS)

description: To explore metabolism mechanism of paeoniflorin in the liver and further
 understand intact metabolism process of paeoniflorin, a rapid, convenient
 and effective assay is described using ultra-performance liquid
 chromatography coupled with hybrid quadrupole time-of-flight mass
 spectrometry (UPLC-Q-TOF-MS/MS). The strategy was confirmed in the
 following primary processes: firstly, different concentration of
 paeoniflorin, rat liver microsomes, coenzymes and different incubated
 conditions were optimized to build a biotransformation model of rat liver
 microsomes in vitro by high performance liquid chromatography with diode
 array detection (HPLC-DAD); secondly, the metabolites of paeoniflorin in
 rat liver microsomes were detected and screened using UPLC-Q-TOF-MS/MS by
 comparing the total ion chromatogram (TIC) of the experimental group with
 those of control groups; finally, the molecular formulae and corresponding
 chemical structures of paeoniflorin metabolites were identified by
 comparing the MS and MS/MS spectra with the self-constructed database and
 simulation software. Based on this analytical strategy, 20 metabolites of
 paeoniflorin were found and 6 metabolites (including four new compounds)
 were tentatively identified. It was shown that hydrolysis and oxidation
 were the major metabolic pathways of paeoniflorin in rat liver microsomes,
 and the main metabolic sites were the structures of pinane and the ester
 bond. These findings were significant for a better understanding of the
 metabolism of paeoniflorin in rat liver microsomes and the proposed
 metabolic pathways of paeoniflorin might provide fundamental support for
 the further research in the pharmacological mechanism of Paeoniae Radix
 Rubra (PRR).
description: ESM
 File