cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8222681.v1
title: Additional file 5: of Trait ontology analysis based on association mapping studies bridges the gap between crop genomics and Phenomics

description: Table S5. Enrichment of TO and GO with DEGs of plant height in maize. The column of “queryitem” represents the number of input genes with the same enrichment term, and the column of “querytotal” represents the total number of input genes. The column of “bgitem” indicates the number of background genes with the same enrichment term, and the column of “bgtotal” indicates the total number of background genes. Pvalue represents the significance level of enrichment. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.8222681
title: Additional file 5: of Trait ontology analysis based on association mapping studies bridges the gap between crop genomics and Phenomics

description: Table S5. Enrichment of TO and GO with DEGs of plant height in maize. The column of “queryitem” represents the number of input genes with the same enrichment term, and the column of “querytotal” represents the total number of input genes. The column of “bgitem” indicates the number of background genes with the same enrichment term, and the column of “bgtotal” indicates the total number of background genes. Pvalue represents the significance level of enrichment. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.8222687
title: Additional file 6: of Trait ontology analysis based on association mapping studies bridges the gap between crop genomics and Phenomics

description: Table S6. Enrichment of TO and GO with kernel-size genes in rice. The meaning of each column is consistent to that of Table S5. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8222687.v1
title: Additional file 6: of Trait ontology analysis based on association mapping studies bridges the gap between crop genomics and Phenomics

description: Table S6. Enrichment of TO and GO with kernel-size genes in rice. The meaning of each column is consistent to that of Table S5. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.12941118.v1
title: Additional file 3 of A family of partial-linear single-index models for analyzing complex environmental exposures with continuous, categorical, time-to-event, and longitudinal health outcomes

description: Additional file 3. R markdown document demonstrating all descriptive and analytical process of this article.
DOI: 10.6084/m9.figshare.7698269
title: Global gridded AHF for 2015 (30 arc-second)

description: This data shows the spatial distribution of the annual mean anthropogenic heat flux (AHF) for 2015 in the world. Spatial resolution of this data is 30 arc-second.
DOI: 10.6084/m9.figshare.20279279.v1
title: Additional file 1 of Incidence and risk factors of infertility among couples who desire a first and second child in Shanghai, China: a facility-based prospective cohort study

description: Additional file 1: Table S1. Multi-collinearity analysis between independent variables included in the regression models.
DOI: 10.6084/m9.figshare.8222612.v1
title: Additional file 4: of Transcriptome analysis revealed potential mechanisms of differences in physiological stress responses between caged male and female magpies

description: Figure S4A. The Th1 and Th2 cell differentiation pathway (ko04658 ). Figure S4B. The Th17 cell differentiation pathway (ko04659 ). Genes colored in red and blue represent that they were up-regulated in male and female magpies, respectively, and those colored in green indicate that expressions of the genes were either up- or down-regulated in both male and female magpies. (ZIP 62 kb)
DOI: 10.6084/m9.figshare.8222657
title: Additional file 1: of Trait ontology analysis based on association mapping studies bridges the gap between crop genomics and Phenomics

description: Table S1. Relationship of different level traits. Level1~7 represent different TO layers from top to bottom. (XLSX 48 kb)
DOI: 10.5281/zenodo.8342157
title: The rediscovery of a relict unlocks the first global phylogeny of whip spiders (Amblypygi)

description: Asymmetrical rates of cladogenesis and extinction abound in the Tree of Life, resulting in numerous minute clades that are dwarfed by larger sister groups. Such taxa are commonly regarded as phylogenetic relicts or “living fossils” when they exhibit an ancient first appearance in the fossil record and prolonged external morphological stasis, particularly in comparison to their more diversified sister groups. Due to their special status, various phylogenetic relicts tend to be well-studied and prioritized for conservation. A notable exception to this trend is found within Amblypygi (“whip spiders”), a visually striking order of functionally hexapodous arachnids that are notable for their antenniform first walking leg pair (the eponymous “whips”). Paleoamblypygi, the putative sister group to the remaining Amblypygi, is known from Late Carboniferous and Eocene deposits, but is survived by a single living species, Paracharon caecus Hansen, 1921, that was last collected in 1899. Due to the absence of genomic sequence-grade tissue for this vital taxon, there is no global molecular phylogeny for Amblypygi to date, nor a fossil-calibrated estimation of divergences within the group. Here, we report a previously unknown species of Paleoamblypygi from a cave site in Colombia. Capitalizing upon this discovery, we generated the first molecular phylogeny of Amblypygi, integrating ultraconserved element sequencing with legacy Sanger datasets and including described extant genera. To quantify the impact of sampling Paleoamblypygi on divergence time estimation, we performed in silico experiments with pruning of Paracharon. We demonstrate that the omission of relicts has a significant impact on the accuracy of node dating approaches that outweighs the impact of excluding ingroup fossils, which bears upon the ancestral range reconstruction for the group. Our results underscore the imperative for biodiversity discovery efforts in elucidating the phylogenetic relationships of “dark taxa”, and especially phylogenetic relicts in tropical and subtropical habitats. The lack of reciprocal monophyly for Charontidae and Charinidae leads us to subsume them into one family, Charontidae, new synonymy.
description: Funding provided by: Global Genome Initiative*
Crossref Funder Registry ID:
Award Number: GGI-Peer-2018-179

Funding provided by: Global Genome Initiative*
Crossref Funder Registry ID:
Award Number: GGI-Rolling-2018-200

Funding provided by: National Science Foundation
Crossref Funder Registry ID: http://dx.doi.org/10.13039/100000001
Award Number: IOS-2016141

Funding provided by: CAPES
Crossref Funder Registry ID: http://dx.doi.org/10.13039/501100002322
Award Number: 88882.426372/2019-01

Funding provided by: CAPES
Crossref Funder Registry ID: http://dx.doi.org/10.13039/501100002322
Award Number: 88887.631058/2021-00

Funding provided by: Binational Science Foundation*
Crossref Funder Registry ID:
Award Number: 2019216
DOI: 10.6084/m9.figshare.20279351.v1
title: Additional file 10 of A novel signature derived from metabolism-related genes GPT and SMS to predict prognosis of laryngeal squamous cell carcinoma

description: Additional file 10: Table S4. List of differentially expressed MRGs.
DOI: 10.6084/m9.figshare.20279378.v1
title: Additional file 8 of A novel signature derived from metabolism-related genes GPT and SMS to predict prognosis of laryngeal squamous cell carcinoma

description: Additional file 8: Table S2. Metabolic-related pathways and corresponding genes from GSEA.
DOI: 10.6084/m9.figshare.8222669
title: Additional file 3: of Trait ontology analysis based on association mapping studies bridges the gap between crop genomics and Phenomics

description: Table S3. 10â k and 25â k TO datasets in maize. (XLSX 1535 kb)
DOI: 10.6084/m9.figshare.12941118
title: Additional file 3 of A family of partial-linear single-index models for analyzing complex environmental exposures with continuous, categorical, time-to-event, and longitudinal health outcomes

description: Additional file 3. R markdown document demonstrating all descriptive and analytical process of this article.
DOI: 10.6084/m9.figshare.8222675
title: Additional file 4: of Trait ontology analysis based on association mapping studies bridges the gap between crop genomics and Phenomics

description: Table S4. 25â k and 50â k TO datasets in rice. (XLSX 3149 kb)
DOI: 10.6084/m9.figshare.8222696.v1
title: Additional file 7: of Trait ontology analysis based on association mapping studies bridges the gap between crop genomics and Phenomics

description: Table S7. Trait searched by key word “plant height”. The columns of “Marker_name, chr_ref, Marker_location, Pvalue, indel/snp, MAF” show the information of associated marker with the phenotypic variation. Pvalue indicates the significance level of the association, MAF represents the minor allele frequency of the marker. The columns of “Pop_type, Pop_size, Marker_set, and Model” show the detailed information of association mapping study, such as the marker number for GWAS (Marker_set), and the genetic model used for the association (Model). The columns of “genome_version, Final_version, Chr, Position, chr_gene, start, Gene_refGene, New_gene, Annotation” show the genomic location of the associated marker, the nearby gene, and the annotation of functional nearby gene. The columns of “ID_ref, Ref, note, and Ref_name” present the related reference information. (XLSX 128 kb)
DOI: 10.6084/m9.figshare.8222657.v1
title: Additional file 1: of Trait ontology analysis based on association mapping studies bridges the gap between crop genomics and Phenomics

description: Table S1. Relationship of different level traits. Level1~7 represent different TO layers from top to bottom. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.8222663.v1
title: Additional file 2: of Trait ontology analysis based on association mapping studies bridges the gap between crop genomics and Phenomics

description: Table S2.Reference information of GWAS. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.20279279
title: Additional file 1 of Incidence and risk factors of infertility among couples who desire a first and second child in Shanghai, China: a facility-based prospective cohort study

description: Additional file 1: Table S1. Multi-collinearity analysis between independent variables included in the regression models.
DOI: 10.6084/m9.figshare.20279351
title: Additional file 10 of A novel signature derived from metabolism-related genes GPT and SMS to predict prognosis of laryngeal squamous cell carcinoma

description: Additional file 10: Table S4. List of differentially expressed MRGs.
DOI: 10.6084/m9.figshare.20279354.v1
title: Additional file 11 of A novel signature derived from metabolism-related genes GPT and SMS to predict prognosis of laryngeal squamous cell carcinoma

description: Additional file 11: Table S5. Enrichment analysis of sub-networks.
DOI: 10.6084/m9.figshare.20279354
title: Additional file 11 of A novel signature derived from metabolism-related genes GPT and SMS to predict prognosis of laryngeal squamous cell carcinoma

description: Additional file 11: Table S5. Enrichment analysis of sub-networks.
DOI: 10.6084/m9.figshare.20279375
title: Additional file 7 of A novel signature derived from metabolism-related genes GPT and SMS to predict prognosis of laryngeal squamous cell carcinoma

description: Additional file 7: Table S1. Clinical information of TCGA cohort.
DOI: 10.6084/m9.figshare.20279381
title: Additional file 9 of A novel signature derived from metabolism-related genes GPT and SMS to predict prognosis of laryngeal squamous cell carcinoma

description: Additional file 9: Table S3. Sequences of all primers used in this study.
DOI: 10.6084/m9.figshare.20279378
title: Additional file 8 of A novel signature derived from metabolism-related genes GPT and SMS to predict prognosis of laryngeal squamous cell carcinoma

description: Additional file 8: Table S2. Metabolic-related pathways and corresponding genes from GSEA.
DOI: 10.6084/m9.figshare.25245610
title: Untitled Item

description: xczXcascdcs
DOI: 10.6084/m9.figshare.25245610.v1
title: Untitled Item

description: xczXcascdcs
DOI: 10.15468/dl.hy2twu
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Auerodendron cubense (Britton & P.Wilson) Urb.",
 "TaxonKey is Reynosia excisa Urb.",
 "TaxonKey is Rhamnidium cubense Britton & P.Wilson"
 ]
 }
 ]
}

 The dataset includes 14 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0273796-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pmz59t
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aneilema ephemerum Faden"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007128-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ffvozh
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Observation",
 {
 "or" : [
 "Country is Costa Rica",
 "Country is Mexico",
 "Country is Guatemala",
 "Country is El Salvador",
 "Country is Honduras",
 "Country is Panama",
 "Country is Belize",
 "Country is Nicaragua"
 ]
 },
 {
 "or" : [
 "Issue is Coordinate reprojected",
 "Issue is Geodetic datum assumed WGS84"
 ]
 },
 "Geometry POLYGON((-96.28099 17.65438,-97.21124 14.20466,-84.58641 3.45313,-77.54308 8.07956,-76.87861 12.26431,-88.17452 23.3767,-96.28099 17.65438))",
 {
 "or" : [
 "DatasetKey is Modelado de la distribución potencial de las musarañas (Mammalia, Soricidae)",
 "DatasetKey is Actualización de la base de datos del Atlas Mastozoológico de México",
 "DatasetKey is Diversidad y distribución mastofaunística en las regiones prioritarias para la conservación del estado de Oaxaca",
 "DatasetKey is Actualización y enriquecimiento de las bases de datos del proyecto de evaluación y análisis geográfico de la diversidad faunística de Chiapas"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Soricidae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 95 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011258-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rvdwnf
title: Occurrence Download

description: A dataset containing 32319 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is COL.2.81_1",
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Plantae",
 "TaxonKey is Chordata"
 ]
 }
 ]
}

 The dataset includes 32319 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0290695-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pek38s
title: Occurrence Download

description: A dataset containing 1885384 species occurrences available in GBIF matching the query:
(Query is too complex. Can be viewed on the landing page)

 The dataset includes 1885384 records from 1887 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0157980-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w8utvs
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elaeosticta seravschanica Kljuykov & Pimenov"
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0187024-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9daend
title: Occurrence Download

description: A dataset containing 39617 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tephritidae"
 ]
}

 The dataset includes 39617 records from 167 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000139-150204170955391/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.apkewy
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((108 2,121 2,121 23,108 23,108 2))",
 "HasCoordinate is true",
 "TaxonKey is Rubrobacterales",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 48 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023880-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xpu7m8
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scaligeria tschimganica Korovin"
 ]
}

 The dataset includes 42 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0187034-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jpwksk
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oroaetus isidori (Des Murs, 1845)"
 ]
}

 The dataset includes 44 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000139-150210113312293/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w7dvj5
title: Occurrence Download

description: A dataset containing 457 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Corymbia ficifolia (F.Muell.) K.D.Hill & L.A.S.Johnson",
 "HasCoordinate is true"
 ]
}

 The dataset includes 457 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027922-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4puc8q
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Odontocline dolichantha (Krug & Urb.) B.Nord."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0181992-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fgkwyr
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scaligeria transcaspica Korovin"
 ]
}

 The dataset includes 32 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0187030-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y9cm5o
title: Occurrence Download

description: A dataset containing 328050 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "Country is Panama",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 328050 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000139-150214022653068/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vj77qq
title: Occurrence Download

description: A dataset containing 3232 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Humulus lupulus L."
 ]
}

 The dataset includes 3232 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130144-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6f69ym
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Peperomia chalhuapuquiana Trel."
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0181991-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d4jzhj
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scaligeria vvedenskyi Kamelin"
 ]
}

 The dataset includes 13 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0187037-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n6onsy
title: Occurrence Download

description: A dataset containing 846 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "Country is Uzbekistan",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 846 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000139-150215220751508/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uffmqb
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parodia rechensis (Buining) F.H.Brandt"
 ]
}

 The dataset includes 8 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0181993-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5uzvmz
title: Occurrence Download

description: A dataset containing 348 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dendrocolaptes platyrostris Spix, 1824"
 ]
}

 The dataset includes 348 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130145-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kx9ksr
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monolena bracteata Gleason"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0181994-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.