cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14703483.v4
title: S1 Plant & Soil Data.xlsx

description: Dataset summarizes physicochemical properties of lead-contaminated calcareous soil treated with: (1) hardwood biochar (BIOC), (2) composted manure (COMP), and commercial water-soluble inorganic fertilizer (INF), along with an unamended control soil (UNAM). It further provides data on plant growth indicators for <i>Raphanus sativus </i>L. and <i> Lactuca sativa</i> L. grown in the four treatments. Lead tissue concentrations for <i>Raphanus sativus </i>L. are described, along with key plant Pb uptake indicators.
DOI: 10.17632/5p37bgckjf.2
title: Data from Ershova E, Wangensteen OS, Descoteaux R, Barth-Jensen C, Præbel K. 2021. Metabarcoding as a quantitative tool for estimating biodiversity and relative biomass of marine zooplankton

description: We explored an enhanced quantitative approach by metabarcoding whole zooplankton communities using a highly degenerate primer set for the mitochondrial marker COI and compared the results to biomass estimates obtained using the traditional morphological approach of processing zooplankton samples. As expected, detected species richness using the metabarcoding approach was 3-4 times higher compared to morphological processing, with the highest differences found in the meroplankton fraction. About 75% of the species identified using microscopy were also recovered in the metabarcoding run. Within the taxa detected using both approaches, the relative numbers of sequence counts showed a strong quantitative relationship to their relative biomass, estimated from length-weight regressions, for a wide range of metazoan taxa. The highest correlations were found for crustaceans and the lowest for meroplanktonic larvae. Our results show that the reported approach of using a metabarcoding marker with improved taxonomic resolution, universal coverage for metazoans, reduced primer bias and availability of a comprehensive reference database, allow for rapid and relatively inexpensive processing of hundreds of samples at a higher taxonomic resolution than traditional zooplankton sorting. The described approach can therefore be widely applied for monitoring or ecological studies.
DOI: 10.6084/m9.figshare.14703483
title: S1 Plant & Soil Data.xlsx

description: Dataset summarizes physicochemical properties of lead-contaminated calcareous soil treated with: (1) hardwood biochar (BIOC), (2) composted manure (COMP), and commercial water-soluble inorganic fertilizer (INF), along with an unamended control soil (UNAM). It further provides data on plant growth indicators for <i>Raphanus sativus </i>L. and <i> Lactuca sativa</i> L. grown in the four treatments. Lead tissue concentrations for <i>Raphanus sativus </i>L. are described, along with key plant Pb uptake indicators.
DOI: 10.6084/m9.figshare.14703483.v6
title: S1 Plant & Soil Data.xlsx

description: Dataset summarizes physicochemical properties of lead-contaminated calcareous soil treated with: (1) hardwood biochar (BIOC), (2) composted manure (COMP), and commercial water-soluble inorganic fertilizer (INF), along with an unamended control soil (UNAM). It further provides data on plant growth indicators for <i>Raphanus sativus </i>L. and <i> Lactuca sativa</i> L. grown in the four treatments. Lead tissue concentrations for <i>Raphanus sativus </i>L. are described, along with key plant Pb uptake indicators.
DOI: 10.6084/m9.figshare.14703483.v5
title: S1 Plant & Soil Data.xlsx

description: Dataset summarizes physicochemical properties of lead-contaminated calcareous soil treated with: (1) hardwood biochar (BIOC), (2) composted manure (COMP), and commercial water-soluble inorganic fertilizer (INF), along with an unamended control soil (UNAM). It further provides data on plant growth indicators for <i>Raphanus sativus </i>L. and <i> Lactuca sativa</i> L. grown in the four treatments. Lead tissue concentrations for <i>Raphanus sativus </i>L. are described, along with key plant Pb uptake indicators.
DOI: 10.14469/hpc/8118
title: Supplementary Data for 'Adrenal and thyroid function is normal in patients who survive COVID-19'

description: This research study aimed to assess adrenal and thyroid function in patients who had survived COVID-19. This data contains Supplementary Material (Supplemental Figure 1) for the above research project. We have submitted our manuscript to JCEM for consideration of publication, and are awaiting an outcome.
DOI: 10.14469/hpc/8293
title: Me TS4 (27)

description: TS4, b3lyp+GD3BJ/Def2-SVPP, SCRF=THF, ΔG = -1362.8936, ΔΔG = 5.77
DOI: 10.14469/hpc/8294
title: H TS4 (26)

description: TS4, b3lyp+GD3BJ/Def2-SVPP, SCRF=THF, ΔG = -1323.6255, ΔΔG = 8.60
DOI: 10.14469/hpc/8296
title: tBu TS3 (25)

description: TS3, b3lyp+GD3BJ/Def2-SVPP, SCRF=THF, ΔG = -1480.6736, ΔΔG = 8.66
DOI: 10.14469/hpc/8298
title: Et TS3 (23)

description: TS3, b3lyp+GD3BJ/Def2-SVPP, SCRF=THF, ΔG = -1402.1519, ΔΔG = 6.34
DOI: 10.14469/hpc/8299
title: Me TS3 (22)

description: TS3, b3lyp+GD3BJ/Def2-SVPP, SCRF=THF, ΔG = -1362.8923, ΔΔG = 6.59
DOI: 10.14469/hpc/8300
title: tBu-H-TS1

description: Gaussian Calculation
DOI: 10.14469/hpc/8301
title: H reactant extension (16)

description: Reactant, b3lyp+GD3BJ/Def2-SVPP, SCRF=THF, ΔG = -1323.6392
DOI: 10.14469/hpc/8302
title: Me reactant extension (17)

description: Reactant, b3lyp+GD3BJ/Def2-SVPP, SCRF=THF, ΔG = -1362.9028
DOI: 10.14469/hpc/8303
title: Et reactant extension (18)

description: Reactant, b3lyp+GD3BJ/Def2-SVPP, SCRF=THF, ΔG = -1402.162
DOI: 10.14469/hpc/8304
title: iPr reactant extension (19)

description: Reactant, b3lyp+GD3BJ/Def2-SVPP, SCRF=THF, ΔG = -1441.4257
DOI: 10.14469/hpc/8305
title: tBu reactant extension (20)

description: Reactant, b3lyp+GD3BJ/Def2-SVPP, SCRF=THF, ΔG = -1480.6874
DOI: 10.17632/w9kjktpv82.1
title: LINF_130008300

description: alpha tubulin; Leishmania infantum
DOI: 10.5255/ukda-sn-854778
title: Health Governance After Brexit: Street Ethnography and Elite Interviews, 2019-2021

description: Street ethnography was conducted through street interviews in the North of England (Sheffield, Rochdale and Rotherham) and Northern Ireland (Newry, Derry/Londonderry) designed to elicit public understandings of accountability for post-Brexit realities, and hence legitimacy of post-Brexit governance. Ethnographic street interviews are useful for capturing a diffuse public ‘mood’ in particular locations identified as important for expectations about post-Brexit health governance - the ‘left behind’. The term ‘ethnographic’ means these interviews occur in ‘unstructured’ public spaces, like shopping centres or high streets, and are based on unobtrusive questions about abstract concepts. Their aim is to capture intuitive conceptions of key ideas (‘what do you think of when you hear the word accountability?’, for example), in a context where research participants are more likely to give answers reflecting their intuitive expectations and views in a way that more structured methods like focus groups do not. The metaphors people use to describe abstract or complex concepts (such as accountability for post-Brexit governance of health and the NHS) reveal how they frame, experience and understand the world, and key concepts related to it. Transcripts and field notes from the ethnographic interviews have been thematically coded. This contribution is particularly distinctive in political science studies, which tend not to examine ‘everyday’ conceptions of accountability in a broader context of legitimacy. The collection of data from elite stakeholders relevant to the project was carried out in the first instance through semi-structured interviews. Two interviewers (TH and MW) conducted the interviews with co-producer stakeholder participants in their workplaces in England (predominantly London, but also Leeds and Alton, Kent) and one interviewer (MF) conducted the interviews with participants in Northern Ireland/ROI (predominantly Belfast and Dublin).
DOI: 10.17632/y6tt9mrf38.1
title: Gaoyuzhuang and Kwagunt SIMS carbon isotope data

description: Raw data for two sessions of SIMS carbon isotope measurements of Proterozoic filamentous microfossils from cherts of the Gaoyuzhuang and Kwagunt Formations.
DOI: 10.17632/mvn2tgwxs5.1
title: THE IMPACT OF SURFACTANTS AND PARTICLES ON THE STABILITY OF EMULSION SYSTEMS

description: The data presented is to assess and predict the stability of emulsions observed in the North Coast Marine Acreage (NCMA) of Trinidad and Tobago. This is to (1) Determine the stabilizing factors of emulsions observed in NCMA via laboratory work, (2) Establish a model for predicting emulsion stability expected of a surfactant stabilized Pickering emulsion system and (3) Compare the results of laboratory testing to model results using NCMA emulsion samples.
DOI: 10.17632/97ddmv4r6p.1
title: Complementary material, Dietary habits and nutritional status in students of the University Corporation Rafael Nunez, Cartagena-Colombia

description: Raw data and survey
DOI: 10.17632/gb5bd386g4.2
title: Data, Models, and Scripts of Integrated Physiological Model of Virtual Diabetic Patient for Machine Learning Research

description: Machine Learning (ML) based predictive models of blood glucose forecasting for diabetic patient produce future glucose trend without any physiological explanation. In this research effort, operation research (OR) is adopted by building a constraint-based physiological model of a diabetic patient with exercise dynamics for producing explanation from ML-based forecasting. The proposed constraint-based diabetic model is implemented in MATLAB/Simulink environment and validated with clinical and free-living datasets. Then the model is applied for OR on forecasting of a Feed-Forward Neural Network (FFNN) which is built on continuous glucose monitoring (CGM) profile along with carbohydrate and physical activity data of a type-2 diabetic patient. This material set contains all Simulink model files, MATLAB scripts, the experimental datasets used for building and validating physiological and ML models, and result files.
DOI: 10.17632/g54vtzmtjd.1
title: Enhanced Arctic Stratification during Mid Pliocene Warm Period

description: This study proposes that the water column stratification strengthens at the Yermak Plateau during warmer periods of MPWP and weakened during colder periods based on the relative nutrient utilization at the surface. The relative nutrient utilization is reconstructed using nitrogen isotope (δ15N) of sedimentary organic matter (SOM), where we have also checked for the provenance and the burial diagenesis. The sediment core is collected during ODP expedition 151 from Hole 910C, Yermak Plateau, Arctic Ocean. The water column depth at the study site is 556.4 m. We have measured the δ15N values of SOM to reconstruct the relative nutrient utilization. The CaCO3 %, Mass accumulation rate of CaCO3 (MAR), and Ba/Al are used to reconstruct the surface water productivity. The carbon isotope (δ13C) and the elemental concentration (total organic carbon (TOC) and total nitrogen (TN)) of SOM are measured to determine the provenance and diagenetic alteration at the study site. The provenance of the organic matter is determined from δ13C versus C/N ratio. While, the diagenetic alteration is observed from the cross plot between δ15N vs TOC, TN, and C/N. From this data set, we found that the origin of the organic matter is mostly from the marine environment with a negligible diagenetic alteration. The high δ15N values with high productivity indicate the maximum consumption of nutrients during the interglacial periods, which suggests that the limited nutrient supply to the surface could be due to the strong stratification. Whereas during the colder period the low δ15N values with low productivity indicate low relative nutrient utilization and it implies the repletion of nutrient at the surface with new nitrate could be due to the weak stratification. This study finds that the strong stratification during the warmer period at the Yermak Plateau could be due to the freshening of the surface layer via more sea ice melt, river runoff and, net precipitation. The weak stratification during the colder period could be due to the lowering of salinity gradient due to brine rejection during sea ice formation.
DOI: 10.17632/bhkt5ys6k9.1
title: A Bibliometrics Analysis of Input-Output Method in International Trade and Sustainability (2008-2018)

description: The data in this study was obtained from WOS from time period between 2008 and 2018. Identification of key words: “Input-Output Method” was searched and we obtain 6369 documents. We filter refine search again “International trade”, then we obtain 310 documents. We filtered for article only for this study than we obtain 295 documents. Finally, filtering language to English only, we obtain 294 documents. In the same way we searched terminology “Sustainability” after “Input-Output Method” term was searched then we obtain 216 documents.
DOI: 10.5255/ukda-sn-854881
title: Oceanic Exchanges: Tracing Global Information Networks in Historical Newspaper Repositories, 1840-1914

description: 13 semi-structured interviews were conducted with librarians, archivists and digital content managers who work in in public institutions and commercial companies in Europe, North America and Australasia. Interviews were conducted between February and December 2018 in accordance with ethics procedures at Loughborough University (29 January 2018) and University College London (21st May 2018). After interviews were completed a transcript was written up and interviewees were invited to comment on or submit corrections to the transcripts. We then analysed the interviews according to an inductive, thematic approach. The transcribed interviews were destroyed in line with ethics requirements.
DOI: 10.17632/365bfpzs4w.1
title: INVOLVING OF METALLOTHIONEINS IN THE PATHOGENESIS OF SYNOVIAL TISSUE INFLAMMATION: A STUDY IN RATS WITH ACUTE GONARTHRITIS

description: Despite the importance of zinc (Zn) in the suppressing of inflammation, the Zn functionality in the knee joint under the gonarthritis (GA) is not elucidated. The aim of this study was to investigate the participation of Zn- buffering and stress responsive proteins metallothioneins (MTs) in the pathogenesis of the synovial tissues under the experimental acute GA. The inflammation was induced in rats by intra-articular administration of carrageenan. The concentrations of MTs total protein (MTSH), Zn-bound protein (Zn-MTs), total Zn concentration in the tissue, the indexes of oxidative stress and cholinesterase activity were determined. The level of sialic acids was indicated in the blood serum. The enhancing of sialic acids concentration by 42% and cholinesterase depletion confirmed the inflammation. In the animals with GA, total level of Zn in the tissue was correspondent to control. However, the MTSH and Zn-MT levels were elevated (by 79 and 46% respectively). This disproportionate rate can be due to partial oxidation of thiols. The superoxide dismutase activity was elevated, radical scavenging activity and protein carbonylation were correspondent to control, but the levels of catalase, glutathione–S-transferase and glutathione were decreased by 28-44%, and lipid peroxidation (TBARS) was increased by 59% compared to control group. Principal Component Analysis confirmed the strong interrelations between MTs and oxidative stress indexes. This preliminary study provides the basis for the understanding of the reason for Zn imbalance in the acute GA as the result of the impairment of thiol redox balance and proposes these biomarkers for the evaluation of knee joint pathologies.
DOI: 10.17632/nss89tyb8x.1
title: supplemental material:The activated adenosine A2A receptor (ADA2AR) is essential for angiogenesis during bone healing

description: Poor angiogenesis causes bone nonunion and vascular endothelial cells (VECs) are essential for angiogenesis. The activated adenosine A2A receptor (ADA2AR) promotes bone healing but the role of ADA2AR in angiogenesis during bone healing has not been discussed, in addition, the effects of ADA2AR on VECs are still controversial. This study explored the effects of ADA2AR on VECs in the bone fracture microenvironment. CGS21680 was used to activate ADA2AR and ZM241385 inhibited the ADA2AR. Firstly, we found that CGS21680 accelerated angiogenesis in the early stage of bone healing and ZM241385 suppressed the angiogenesis. Secondly, we constructed the bone fracture microenvironment and found that ZM241385 inhibited VECs proliferation and vascular tube formation in vitro. Macrophages are the important cells to activate VECs and promote angiogenesis in the early stage of bone healing, so we analyzed the effects of ADA2AR in macrophage regulation on VECs. We found that activated ADA2AR enhanced the regulation of macrophage on VECs, in addition, promoted VECs migration and vascular tube formation in bone fracture microenvironment, while, ZM241385 still suppressed vascular tube formation. Meanwhile, we inhibited the exosomes secreted from macrophages, which could reverse the effects of activated ADA2AR on VECs. Besides, we found that CGS21680 promoted macrophages to secrete exosomes to activate VECs and ZM241385 inhibited the exosomes secreted. Thirdly, we explored the role of exosomes secreted by macrophages and found that it was the key factor in activated ADA2AR on VECs. Finally, the involved lncRNA and mRNA in activated ADA2AR on VECs were analyzed. CGS21680 upregulated 3274 mRNAs and downregulated 2236 mRNAs, in addition, upregulated 1696 lncRNAs and downregulated 1882 lncRNAs. The hub genes involved in angiogenesis were Flt1, Fgf2, Mapk14, Fn1 and Jun. Overall, the activated ADA2AR was essential for angiogenesis during bone healing, in addition, ADA2AR inactivated lead to poor angiogenesis and bone nonunion.
DOI: 10.17632/nss89tyb8x.2
title: supplemental material:The activated adenosine A2A receptor (ADA2AR) is essential for angiogenesis during bone healing

description: Poor angiogenesis causes bone nonunion and vascular endothelial cells (VECs) are essential for angiogenesis. The activated adenosine A2A receptor (ADA2AR) promotes bone healing but the role of ADA2AR in angiogenesis during bone healing has not been discussed, in addition, the effects of ADA2AR on VECs are still controversial. This study explored the effects of ADA2AR on VECs in the bone fracture microenvironment. CGS21680 was used to activate ADA2AR and ZM241385 inhibited the ADA2AR. Firstly, we found that CGS21680 accelerated angiogenesis in the early stage of bone healing and ZM241385 suppressed the angiogenesis. Secondly, we constructed the bone fracture microenvironment and found that ZM241385 inhibited VECs proliferation and vascular tube formation in vitro. Macrophages are the important cells to activate VECs and promote angiogenesis in the early stage of bone healing, so we analyzed the effects of ADA2AR in macrophage regulation on VECs. We found that activated ADA2AR enhanced the regulation of macrophage on VECs, in addition, promoted VECs migration and vascular tube formation in bone fracture microenvironment, while, ZM241385 still suppressed vascular tube formation. Meanwhile, we inhibited the exosomes secreted from macrophages, which could reverse the effects of activated ADA2AR on VECs. Besides, we found that CGS21680 promoted macrophages to secrete exosomes to activate VECs and ZM241385 inhibited the exosomes secreted. Thirdly, we explored the role of exosomes secreted by macrophages and found that it was the key factor in activated ADA2AR on VECs. Finally, the involved lncRNA and mRNA in activated ADA2AR on VECs were analyzed. CGS21680 upregulated 3274 mRNAs and downregulated 2236 mRNAs, in addition, upregulated 1696 lncRNAs and downregulated 1882 lncRNAs. The hub genes involved in angiogenesis were Flt1, Fgf2, Mapk14, Fn1 and Jun. Overall, the activated ADA2AR was essential for angiogenesis during bone healing, in addition, ADA2AR inactivated lead to poor angiogenesis and bone nonunion.
DOI: 10.17632/md6rpdh2zt.1
title: The anti-HV T-cell repertoire in protective HLA alleles

description: This file contains all TCR protein sequences that have been used in a study focusing on the HIV-specific T-cell repertoire in protective HLA alleles.
DOI: 10.17632/g9tpsdctt4.1
title: 20S and 26S Proteasome-binding proteins of the rabbit brain: a proteomic dataset

description: Fractions of 26S and 20S proteasomes isolated from the rabbit brain by the method of salt fractionation (salt-induced precipitation) contain intrinsic proteasome proteins responsible for assembly of the core particle and regulatory particle of proteasome and also proteasome-binding proteins. These proteasome-binding proteins include components of the ubiquitin-proteasome system, some ubiquitinated proteins, as well as cytoskeleton components, protective proteins, regulators of gene expression, cell division, and differentiation, and multifunctional proteins (mainly, glycolytic enzymes: glyceraldehyde-3-phosphate dehydrogenase (GAPDH), aldolase, pyruvate kinase, etc.). The multifunctional proteins are also known as “moonlighting proteins” are involved in various (regulatory) processes in the cell and this suggests that they represent important components of the proteasome interactome rather than contaminants of the 26S and 20S proteasome fractions. Data obtained by high-resolution mass spectrometry in Ubiquitine-tag triggered MS3-mode with synchronous fragment ions selection, and nano-flow liquid chromatography (see "Steps to reproduce for details). The presented dataset comprised of two subsets: (1) Data of proteomes obtained for each animal under the study; these data are in Excel format and contain necessary information about proteins, peptides, fragments, and their abundance, and other related meta-data. Data contained specific modifications identified in peptides by the PSMs. (2) Combined data for the complete cohort of animals with protein distribution. Both subsets also contain information about semi-quantitative protein representation estimated by the NSAF algorithm in the Search GUI/Peptide Shaker search engine.
DOI: 10.17632/t8ctp63xk7.1
title: Supplementary Tables for "Skin Substitutes for the Management of Mohs Micrographic Surgery Wounds: A Systematic Review" (JAAD)

description: Supplementary Table 1. Search Strategy Supplementary Table 2. Inclusion and Exclusion Criteria For JAAD Submission
DOI: 10.17632/szhwtnvkxn.1
title: pore_water_data

description: Pore water data of CL44, CL180, and CL27A in the South China Sea.
DOI: 10.17632/ykz9n962pk.1
title: LINF_130008700

description: alpha tubulin; Leishmania infantum
DOI: 10.17632/dst8zknkvy.1
title: LINF_130008600

description: alpha tubulin; Leishmania infantum