cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/cp88jmb3ff.1
title: Bryson_MOLECULAR-CELL-D-22-00555_Figure_S1A

description: A giant virus genome is densely packaged by stable nucleosomes within virions.
The two doublet histones of Marseillevirus are distantly related to the four eukaryotic core histones and wrap 121 basepairs of DNA to form remarkably similar nucleosomes. By permeabilizing Marseillevirus virions and performing genome-wide nuclease digestion, chemical cleavage and mass spectrometry assays, we find that the higher-order organization of Marseillevirus chromatin fundamentally differs from that of eukaryotes. Marseillevirus nucleosomes fully protect DNA within virions as closely abutted 121-bp DNA wrapped cores without linker DNA or phasing along genes. Likewise, we observed that nucleosomes reconstituted onto multi-copy tandem repeats of a nucleosome positioning sequence are tightly packed. Dense promiscuous packing of fully wrapped nucleosomes rather than “beads-on-a-string” with genic punctuation represents a new mode of DNA packaging by histones. We suggest that doublet histones have evolved for viral genome protection and may resemble an early stage of histone differentiation leading to the eukaryotic octameric nucleosome.
Marseillevirus nucleosomes are mostly insoluble after MNase treatment. Tapestation gel image of DNA purified from breached Marseillevirus T19 virus particles after NP40 treatment for times as indicated and 5 min MNase digestion.
DOI: 10.17632/xsv55f7z98.1
title: 3D LiDAR and Photogrammetry Scans of Pang Jai Fabric Market, Sham Shui Po, Hong Kong (Demolished 2022)

description: This data includes a point cloud file from a combined photogrammetric and LiDAR scan of the temporary fabric market in Sham Shui Po, Hong Kong, named "Pang Jai."  Researchers collected the scan using two, approximately 30 minute walk-throughs of the market with the Leica-brand BLK2Go model 3D environment scanner. The scan describes the interior and partial exterior of the market in high detail and color. The scan has been decimated to a voxel size of 5 mm to reduce file size. The data provides clear enough rendering of the physical conditions of the market to allow interpretation of the scan into description of the market's construction, contents, and spatial use. The data is available for purposes of digital conservation of the building, and for interpretation of the house's physical conditions and interior contents through further research. More detailed information on the dataset, including the date the scan was conducted, the location of the market, and related interview and survey datasets are available upon reviewed request.
DOI: 10.17632/sg6j5vr795.1
title: Bryson_MOLECULAR-CELL-D-22-00555_Figure_7D

description: A giant virus genome is densely packaged by stable nucleosomes within virions.
The two doublet histones of Marseillevirus are distantly related to the four eukaryotic core histones and wrap 121 basepairs of DNA to form remarkably similar nucleosomes. By permeabilizing Marseillevirus virions and performing genome-wide nuclease digestion, chemical cleavage and mass spectrometry assays, we find that the higher-order organization of Marseillevirus chromatin fundamentally differs from that of eukaryotes. Marseillevirus nucleosomes fully protect DNA within virions as closely abutted 121-bp DNA wrapped cores without linker DNA or phasing along genes. Likewise, we observed that nucleosomes reconstituted onto multi-copy tandem repeats of a nucleosome positioning sequence are tightly packed. Dense promiscuous packing of fully wrapped nucleosomes rather than “beads-on-a-string” with genic punctuation represents a new mode of DNA packaging by histones. We suggest that doublet histones have evolved for viral genome protection and may resemble an early stage of histone differentiation leading to the eukaryotic octameric nucleosome.
Assembly of Marseillevirus histones onto Widom 601 arrays produces 147-bp nucleosomes. Tapestation gel analysis of DNA from Marseillevirus tetramers and Xenopus octamers assembled using a 3-copy Widom 601 array with zero linker (441 bp) after 5 min MNase digestion and DNA purification. Histone:DNA ratios are indicated for each lane 0.25, 0.5, 1, 1.5. Drosophila melanogaster S2 cell chromatin was digested in parallel as a control (D.m.).
DOI: 10.17632/9srwd22jy8.1
title: G&E Students publications May 2021- July 2022

description: 2022 G&E newsletter full publication list
DOI: 10.17632/4g2yg2cxft.2
title: Research data for the manuscript : The dopamine dip amplitude is a quantitative measure of disappointment

description: Datasets including behavior and the extracellular dopamine dynamics (GRAB-DA2m) and MATLAB codes of the TD models in the paper "The dopamine dip amplitude is a quantitative measure of disappointment", by Shikano et al. Sampling rates are: 1 kHz (TTL by LabVIEW), 20 Hz (GRAB sensor), and appx. 20 Hz (head position). For detailed information, please contact Yu Shikano (shikano_1-yu@yahoo.co.jp) or Norio Takata (takata.norio@keio.jp).
DOI: 10.17632/4g2yg2cxft.1
title: Research data for the manuscript : The dopamine dip amplitude is a quantitative measure of disappointment

description: Datasets including behavior and the extracellular dopamine dynamics (GRAB-DA2m) and MATLAB codes of the TD models in the paper "The dopamine dip amplitude is a quantitative measure of disappointment", by Shikano et al. Sampling rates are: 1 kHz (TTL by LabVIEW), 20 Hz (GRAB sensor), and appx. 20 Hz (head position). For detailed information, please contact Yu Shikano (shikano_1-yu@yahoo.co.jp) or Norio Takata (takata.norio@keio.jp).
DOI: 10.17632/4g2yg2cxft.3
title: Research data for the manuscript : Accompanying augmentation of dopaminergic slow rise and phasic decay at a false-alarm behavior with larger reward expectations

description: Datasets including behavior and the extracellular dopamine dynamics (GRAB-DA2m) and MATLAB codes of the TD models in the paper "Accompanying augmentation of dopaminergic slow rise and phasic decay at a false-alarm behavior with larger reward expectations", by Shikano et al. Sampling rates are: 1 kHz (TTL by LabVIEW), 20 Hz (GRAB sensor), and appx. 20 Hz (head position). For detailed information, please contact Yu Shikano (shikano_1-yu@yahoo.co.jp) or Norio Takata (takata.norio@keio.jp).
DOI: 10.17632/j8zsjykjvg.1
title: Maternal Ever-smoking is Associated with an Increased Risk of Atopic Dermatitis in the Offspring in a Dose–response Relationship

description: The association between smoking during pregnancy and the development of atopic dermatitis (AD) in offspring has been studied. However, the association between maternal smoking before pregnancy and the development of allergic diseases in offspring is rarely studied. This study aimed to evaluate whether maternal ever-smoking status increases the risk of AD in offspring.
DOI: 10.17632/w5pry5zgwy.1
title: FTIR

description: Effectively fabrication of spherical-shaped silver nanoparticles through aqueous leaf extracts of Acokanthera oppositifolia and Leucaena leucocephala of 13.38 and 11.93 nm, respectively. These nanoparticles possess good antibacterial activity as compared to their pure aqueous extracts against gram-positive as well as gram-negative but are more effective against gram-negative bacteria.
DOI: 10.17632/zjs8nwcdt2.1
title: Data of chemical characteristics and reactive transport analysiss of salt ions during freeze and thaw period in Yonglian area

description: The soil samples were collected in Yonglian experimental station of Hetao Irrigation District, Inner Mongolia Autonomous Region, China, to measure the change of total soil water, soil salt and its ion components.   Using these data sets, the FREZCHEM model was used to calculate the soil water and salt content in liquid and solid phases, and then the HYDRUS-1D model was used to simulate the movement of liquid soil water and soluble salt.    And the potential migration capability of soil water and salt components were then estimated by comparing the distribution profiles obtained by HYDRUS-1D and FREZCHEM.
DOI: 10.17632/ysmbcgyscx.1
title: SDH deficient RCC

description: RNA counts from sequencing of a cohort of SDH deficient RCCs. For description of the dataset please link to http://dx.doi.org/10.2139/ssrn.4102630. Note that most of these samples are SDH deficient RCCs, but one if a paraganglioma, and one is a clear cell RCC. Please see paper for full description, or Table S1 below.
DOI: 10.17632/7y943f6wf8.1
title: OnStove inputs and outputs

description: This repository contains the techno- and socio-economic input data used in order to develop the results of the first application of OnStove for all of Africa and the outputs of this effort, as well as the datasets needed in order to replicate the study for one country using the notebook found on the official OnStove repository (https://github.com/Open-Source-Spatial-Clean-Cooking-Tool/OnStove/tree/main/example). Note that the repository does not include the geospatial datasets used in the analysis, for these please refer to the connected publication and its supplementary material.

The input folder contains the techno- and socio-economic folders for all countries in the analysis. They are further divided into sub-folders for the private and social scenarios, which is in line with the two scenarios ran in for the publication.

The output folder contains zipped results for all countries in the analysis for both the private and social scenarios. Each result folder contains:

1.     A main plot including a)  a bar-plot  indicating  the  stove- split  in  the  scenario,  b) a map of the spatial distribution of stoves with the highest net-benefit across SSA, c)  a box-plot  indicating  the  net-benefit  resulting  from switching to each stove type and d) a plot showing the total costs and monetized benefits of each stove type, note that salvage costs are incorporated in the investment values (Investment costs = investment – salvage).
2.     A .csv file with the summaries of the results
3.     A .pkl file with the full results of the analysis, which can be explored using the OnStove python package.
DOI: 10.17632/3f67hvwp9z.1
title: Raw data of effect of heating rate on TME experiment

description: This file contains the raw data of the effect of heating rate on the TME experiment.
DOI: 10.17632/6bzzdfwbf9.2
title: Representation of COLOR concept in the French phraseological picture of the world and its perception by Ukrainian Francophone students

description: The purpose of the research was to present the typical features and individual differences of verbal perception and understanding of COLOR concept by French-speaking Ukrainian students. To realize the goal, we set the task to identify the ethno-cultural specificity of the representation of COLOR concept in the French phraseological picture of the world and analyze the peculiarities of verbal perception of the connotative content of achromatic and polychromatic colors in the composition of phraseological units by students-francophones.
Research methods and techniques. The semantic-cognitive method, the psycholinguistic approach (free associative experiment), the technique of frequency-statistical characteristics, the method of component analysis, the linguacultural analysis, the system analysis and the research synthesis were used in the research.
Results. Color is a specific mental symbol that is verbalized and conveys a certain psychoemotional state of an individual. The coloratives which are directly related to the visual perception of the world constitute a psychoemotional component of the conceptual and linguistic picture of the world. The COLOR concept is actualized by emosems. Among the coloratives of phraseological nominations achromic (white and black) as well as polychrome (blue) are most represented in the psychological consciousness of the French language. Polychrome and achromic colors are correlated with certain emotions, character traits, psychophysical state. It has been established that the French cultural tradition is characterized by bioarchetypic correspondences between individual colors and certain symbolic meanings. A certain psychoemotional state corresponds to a certain color. Thoughts, feelings and associative states of a person are presented in the form of a color palette.
Conclusions. The obtained results indicate that to a large extent the association «color - psychoemotional state» in the French phraseological picture of the world coincides with the ideas of Ukrainian students about psychoemotional states expressed by the French phraseologisms. The phraseological fond with color components shows a powerful semantic and cognitive potential, the study of which deserves great attention from linguists, psychologists and psycholinguists on the way to a comprehensive study of human speech activity.
Key words: psycholinguistics, phraseological picture of the world, COLOR concept, polychrome/achromic color, colorative, emosema, association, Francophonie students.
DOI: 10.6084/m9.figshare.21307917
title: LUMBAR VERTEBRAE MORPHOMETRIC DATA.xlsx

description: This descriptive anatomical study included 200 adult cadaveric dry lumbar vertebrae. The sample size was as per the previous study by Singh et. al. The age and gender of the specimens was not taken into consideration. Congenitally deformed lumbar vertebrae were excluded from the present study. Measurements of this study are performed by the digital Vernier calipers. The data are expressed in millimeters and tabulated as mean ± standard deviation. The details of the measurements performed in this investigation are represented in Fig. 1 and Table 1. The SPSS software (version 26) was utilized to perform the statistical analysis.
DOI: 10.17632/dh67z28gv7.1
title: Mesoproterozoic molar tooth structure related to increased marine oxygenation

description: This database contains the major and trace element compositions, as well as the carbon and oxygen isotope compositions, of carbonate from the Gaoyuzhuang Formation.
DOI: 10.17632/83bwz9v6kn.1
title: LINF_330010900

description: mitoribosomal protein mL78
Leishmania infantum (strain JPCM5)
DOI: 10.17632/99pntzj3jf.1
title: LINF_330011500

description: hypothetical protein - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/rjzztzpttj.1
title: LINF_330011300

description: hypothetical protein - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/93w3xw56s3.1
title: LINF_330011000

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/sjycp9m6wb.1
title: LINF_330011400

description: hypothetical protein - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/4xfvsdzcjr.1
title: Integrative physiological and metabolomics study reveals adaptive strategies of wheat seedlings to salt and heat stress combination

description: Metabolomics dataset in the study, "Integrative physiological and metabolomics study reveals adaptive strategies of wheat seedlings to salt and heat stress combination".
DOI: 10.17632/p4kr74wmpm.1
title: The relationship between creativity and language as measured by linguistic maturity and text production

description: The relationship between creativity and language as measured by linguistic maturity and text production
DOI: 10.17632/x7bprp7y8b.1
title: RNAseq of mast cells

description: RNA-seq of mast cells with CKBA treatment in atopic dermatitis
DOI: 10.17632/smngck78mr.1
title: Marseillevirus G648 ORFs

description: A giant virus genome is densely packaged by stable nucleosomes within virions.
The two doublet histones of Marseillevirus are distantly related to the four eukaryotic core histones and wrap 121 basepairs of DNA to form remarkably similar nucleosomes. By permeabilizing Marseillevirus virions and performing genome-wide nuclease digestion, chemical cleavage and mass spectrometry assays, we find that the higher-order organization of Marseillevirus chromatin fundamentally differs from that of eukaryotes. Marseillevirus nucleosomes fully protect DNA within virions as closely abutted 121-bp DNA wrapped cores without linker DNA or phasing along genes. Likewise, we observed that nucleosomes reconstituted onto multi-copy tandem repeats of a nucleosome positioning sequence are tightly packed. Dense promiscuous packing of fully wrapped nucleosomes rather than “beads-on-a-string” with genic punctuation represents a new mode of DNA packaging by histones. We suggest that doublet histones have evolved for viral genome protection and may resemble an early stage of histone differentiation leading to the eukaryotic octameric nucleosome.
Open reading frames from Marseillevirus G648 genome assembly
DOI: 10.17632/vcrvgxr6md.1
title: Widom 601 arrays

description: A giant virus genome is densely packaged by stable nucleosomes within virions.
The two doublet histones of Marseillevirus are distantly related to the four eukaryotic core histones and wrap 121 basepairs of DNA to form remarkably similar nucleosomes. By permeabilizing Marseillevirus virions and performing genome-wide nuclease digestion, chemical cleavage and mass spectrometry assays, we find that the higher-order organization of Marseillevirus chromatin fundamentally differs from that of eukaryotes. Marseillevirus nucleosomes fully protect DNA within virions as closely abutted 121-bp DNA wrapped cores without linker DNA or phasing along genes. Likewise, we observed that nucleosomes reconstituted onto multi-copy tandem repeats of a nucleosome positioning sequence are tightly packed. Dense promiscuous packing of fully wrapped nucleosomes rather than “beads-on-a-string” with genic punctuation represents a new mode of DNA packaging by histones. We suggest that doublet histones have evolved for viral genome protection and may resemble an early stage of histone differentiation leading to the eukaryotic octameric nucleosome.
DNA sequences of Widom 601 multi-copy arrays used for nucleosome reconstitutions.
DOI: 10.17632/y8jg4hpt49.1
title: Data Set: Planning and scheduling in long-term care homes under pandemic conditions: The case of COVID-19

description: This repository includes two sets of theoretical and realistic instances used in "Planning and scheduling in long-term care homes under pandemic conditions: The case of COVID-19." This data set can be used for future comparisons of the optimization algorithms developed for the long-term care planning and scheduling problems.
DOI: 10.17632/y8jg4hpt49.2
title: Data Set: Planning and scheduling in long-term care homes under pandemic conditions: The case of COVID-19

description: This repository includes two sets of theoretical and realistic instances used in "Planning and scheduling in long-term care homes under pandemic conditions: The case of COVID-19." To be more precise, this repository provides 660 theoretical instances and 50 realistic instances. This data set can be used for future comparisons of the optimization algorithms developed for long-term care planning and scheduling problems.

Problem definition: https://doi.org/10.1016/j.omega.2022.102671
DOI: 10.17632/x3rdxz89h9.1
title: Marseillevirus silver-stained SDS-PAGE Figure 2A

description: A giant virus genome is densely packaged by stable nucleosomes within virions.
The two doublet histones of Marseillevirus are distantly related to the four eukaryotic core histones and wrap 121 basepairs of DNA to form remarkably similar nucleosomes. By permeabilizing Marseillevirus virions and performing genome-wide nuclease digestion, chemical cleavage and mass spectrometry assays, we find that the higher-order organization of Marseillevirus chromatin fundamentally differs from that of eukaryotes. Marseillevirus nucleosomes fully protect DNA within virions as closely abutted 121-bp DNA wrapped cores without linker DNA or phasing along genes. Likewise, we observed that nucleosomes reconstituted onto multi-copy tandem repeats of a nucleosome positioning sequence are tightly packed. Dense promiscuous packing of fully wrapped nucleosomes rather than “beads-on-a-string” with genic punctuation represents a new mode of DNA packaging by histones. We suggest that doublet histones have evolved for viral genome protection and may resemble an early stage of histone differentiation leading to the eukaryotic octameric nucleosome.
Silver-stained SDS-PAGE before cutting out gel slices for MS analyses.
DOI: 10.17632/zsh9nx8v5g.1
title: Marseillevirus G648 Genome Assembly

description: A giant virus genome is densely packaged by stable nucleosomes within virions.
The two doublet histones of Marseillevirus are distantly related to the four eukaryotic core histones and wrap 121 basepairs of DNA to form remarkably similar nucleosomes. By permeabilizing Marseillevirus virions and performing genome-wide nuclease digestion, chemical cleavage and mass spectrometry assays, we find that the higher-order organization of Marseillevirus chromatin fundamentally differs from that of eukaryotes. Marseillevirus nucleosomes fully protect DNA within virions as closely abutted 121-bp DNA wrapped cores without linker DNA or phasing along genes. Likewise, we observed that nucleosomes reconstituted onto multi-copy tandem repeats of a nucleosome positioning sequence are tightly packed. Dense promiscuous packing of fully wrapped nucleosomes rather than “beads-on-a-string” with genic punctuation represents a new mode of DNA packaging by histones. We suggest that doublet histones have evolved for viral genome protection and may resemble an early stage of histone differentiation leading to the eukaryotic octameric nucleosome.
Marseillevirus G648 Genome Assembly G648_26-12-14_Genome_vD.fasta
DOI: 10.17632/k3g7z4wdk2.1
title: LINF_330011600

description: SET4
Leishmania infantum (strain JPCM5)
DOI: 10.17632/584tzdmbh9.1
title: LINF_330011700

description: D-xylulose reductase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/cprx2kx2ws.1
title: A 3D solid beam benchmark for parametric model order reduction

description: A 3D solid beam benchmark is provided for benchmarking parametric model order reduction methods, for example. The example consists of solid brick FE elements and kinematic couplings, thus industry relevant modeling. Using sampled system matrices from Simulia ABAQUS, an affine matrix decomposition is recalculated, which preserves ten variable input parameters.
DOI: 10.17632/jvh2s4zwjg.1
title: Consumer purchase behavior towards brown goods 

description: First hand data was gathered to conduct research to find out consumer purchase behavior towards brown goods at Ludhiana. The data was gathered by using questionnaires then interpreted into tabular and graphical format for better understanding.
DOI: 10.17632/vvn2nyfvwy.1
title: Fitness trend among youth- a study of Ludhiana city

description: This study was conducted to find out the fitness tend among the youth in Ludiana city. First hand data was gathered to conduct research by using questionnaires. The data was gathered by using questionnaires then interpreted into tabular and graphical format for better understanding.  Questions to find out perception of respondents towards fitness, the type of activities they partake in to remain fit and the type of food they eat to remain healthy were asked.
DOI: 10.17632/xw5bht952g.1
title: Urban colonies are less aggressive but forage more than their forest counterparts in the ant Temnothorax nylanderi - Animal Behavior

description: Hypothesis: Urban ant colonies forage more than forest colonies, and are more aggressive
Data : Colony-level data of foraging and aggression, site by site, habitat by habitat
What was found : urban colonies forage more but are less aggressive than forest colony
Data gathering : laboratory experiment of foraging activity and aggression, using video