cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6687086.v1
title: Appendix 4-figure 6: Preliminary maximum likelihood phylogeny of luciferase homologs

description: From our reference genesets, a protein BLAST search detected 24, 20, 32, and 2 luciferase homologs (E-value &lt; 1x10-60) to P. pyralis luciferase (PpyrLuc1; Genbank accession AAA29795) from the P. pyralis, A. lateralis, I. luminosus genesets, and Drosophila melanogaster respectively. We defined the luciferase co-orthology as followings; (1) shows an BLASTP E-value lower than 1.0x10-60 towards DmelPACS (CG6178), (2) phylogenetically sister to DmelPACS, which is the most similar gene to firefly luciferase in D. melanogaster, based on a preliminary maximum likelihood (ML) phylogenetic reconstruction (Appendix 4-figure 6). Preliminary ML phylogenetic reconstruction was performed as follows: The sequences of luciferase homologs from Mengenilla moldrzyki, Pediculus humanus, Limnephilus lunatus, Ladona fulva, Frankliniella occidentalis, Zootermopsis nevadensis, Onthophagus taurus, Anoplophora glabripennis, Agrilus planipennis, Harpegnathos saltator, Blattella germanica, Acyrthosiphon pisum, Tribolium castaneum, Bombyx mori, Anopheles gambiae, Apis mellifera, Leptinotarsa decemlineata, and Dendroctonus ponderosae were obtained from OrthoDB (https://www.orthodb.org)[45]. The sequences which show 99% similarity were filtered by CD-HIT (v4.7)[272]. The resulting sequences and beetle luciferases were aligned using (MAFFT v7.309)[254] using the BLOSUM62 matrix and filtered for spurious sequences and poorly aligned regions using trimAl (v.1.2rev59)[273] (parameters: -strict). The final alignment was 385 blocks and 264 sequences. Then, the best fit amino acid substitution model, LG+F Gamma, was estimated by Aminosan (v1.0.2016.11.07)[274] using the Akaike Information Criterion. Finally, a maximum likelihood gene phylogeny was estimated using RAxML (v8.2.9; 100 bootstrap replicates)[275]. Supporting files such as multiple sequence alignment, gene accession numbers, and other annotations are available on FigShare (DOI: 10.6084/m9.figshare.6687086).<br>
DOI: 10.6084/m9.figshare.17878589.v2
title: phishing_url_test

description: The phishing url dataset contains synthetic data of urls - some regular and some used for phishing. This is the test dataset.<br>The dataset is based on the project (https://github.com/Rohith-2/url_classification_dl) byRohith Ramakrishnan (https://www.linkedin.com/in/rohith-ramakrishnan-54094a1a0/) and others, accompanied bya blog post (https://medium.com/nerd-for-tech/url-feature-engineering-and-classification-66c0512fb34d&gt;).<br>The dataset is released under Creative Commons Zero v1.0 Universal (CC0 1.0).
DOI: 10.6084/m9.figshare.22645030.v5
title: Dataset and R codes for the article: Boreal conifers maintain carbon uptake with warming despite failure to track optimal temperatures

description: This data set contains empirical physiological, morphological, and chemical data collected on two dominant conifer species, <em>Picea mariana </em>and <em>Larix laricina</em>, in June and August 2017 at the SPRUCE (Spruce and Peatland Responses Under Changing Environments) experiment that assesses the response of peatland ecosystems to whole-ecosystem warming and elevated atmospheric CO2 concentrations. The SPRUCE experiment is located 40 km north of Grand Rapids, MN, in the USDA Forest Service Marcell Experimental Forest.
DOI: 10.6084/m9.figshare.23941488.v1
title: Bird clades with less complex appendicular skeletons tend to have higher species richness

description: Supplementary Information, Data, and Code supporting the manuscript "Birds clades with less complex appendicular skeletons tend to have higher species richness" (https://doi.org/10.1038/s41467-023-41415-2). These files include all supplementary notes, supplementary figures, and supplementary tables. Also included are full species-level data on limb skeleton morphology and ecology, ordinal-level species richness, and phylogenetic trees used for analyses described in the text, as well as an R script for replication of all analyses and graphics. The "README.md" file contains more detailed information on the contents of each other file.<br>
DOI: 10.6084/m9.figshare.28748447.v1
title: <b>F</b><b>低 </b><b>D</b><b>水平 </b><b>F</b><b>或 </b><b>T</b><b>反应 </b><b>O</b><b>f </b><b>I</b><b>颅骨 </b><b>A</b><b>神经瘤 </b><b>C</b><b>ombined </b><b>W</b><b>ith </b><b>C</b><b>erebral </b><b>I</b><b>nfarction： </b><b>A</b><b> </b><b>C</b><b>ase</b><b> </b><b>R</b><b>报告</b>

description: <b>视频 1：</b>植入分流器治疗动脉瘤，并保留动脉瘤内的造影剂。<b>视频</b><b> </b><b>2：</b>随访 12 个月，动脉瘤已完全消退。<b>视频</b><b> </b><b>3：</b>36个月时，动脉瘤保持消退，无复发迹象。
DOI: 10.6084/m9.figshare.5124454.v1
title: Supplementary Material for: Distinguishing Subtypes in Primary Progressive Aphasia: Application of the Sydney Language Battery

description: <b><i>Background/Aims:</i></b> Primary progressive aphasia (PPA) comprises three main subtypes, varying in clinical features, patterns of brain atrophy, and underlying pathology. Differentiation of these variants is important for treatment and planning; however, simple, effective cognitive tests to aid diagnosis are lacking. This study introduces a new language battery - the SYDBAT (Sydney Language Battery) - to assist clinicians. <b><i>Methods:</i></b> Fifty-seven PPA patients and 54 age- and education-matched healthy controls were compared on naming, repetition, word comprehension, and semantic association subtests. <b><i>Results:</i></b> Significant group differences were found for all tasks, reflecting different language profiles for each group. Using discriminative function analysis, 80% of PPA cases were correctly classified from three SYDBAT scores, from which a simple diagnostic algorithm was defined. <b><i>Conclusion:</i></b> The SYDBAT is a fast and simple tool which provides a valuable adjunct to clinicians diagnosing PPA.
DOI: 10.6084/m9.figshare.8121242.v1
title: Dataset3.zip

description: Raw dataset for data analyses and create the Figure 5 <br><br>
DOI: 10.6084/m9.figshare.21541602.v2
title: A corpus of machine-annotated incident reports of medication errors

description: <strong>A corpus of machine-annotated incident reports of medication errors</strong> <br> Our dataset contains 478,175 named entities related to medication errors and also differentiates between incident types by recognising discrepancies between what was intended and what actually occurred. <br> When using this dataset, one should also cite the following original data source: Medical Adverse Event Information Collection Project [Iryō jiko jōhō shūshū-tō jigyō] Japan Council for Quality Health Care; 2022 [Available from: https://www.med-safe.jp/index.html.]
DOI: 10.6084/m9.figshare.16574852.v4
title: Horizontal variation in water chemistry and its relationship with phytoplankton and invertebrate communities in Lake Kwania

description: Data was obtained sampling carried out on Lake Kwania, the second largest lake in the Kyoga aquatic system. Sampling was conducted four times between September 2016 and June 2017, covering at least one of the wet (September 2016) and dry seasons (January, February, and June 2017). Water chemistry parameters including; dissolved oxygen, temperature, pH and electrical conductivity were measured <i>in situ</i> at the different sites using the HQ40d portable HACH Multiprobe. Depth profiles for the selected parameters represented only data captured in June 2017. Light transparency was measured using a Secchi disc of 25 cm wide diameter. Water samples for Chlorophyll a concentration determination were collected at 0.5 m below the surface, and analysed using methanol extraction (Stainton et al., 1977). Water samples for nutrient analysis were drawn using a 2L Van Dorn sampler and analysed using various standard methods as set out in Wetzel & Likens (2000).
DOI: 10.6084/m9.figshare.21158902.v1
title: defect, surface, and bulk POSCARs

description: POSCAR of defect crystal structures
DOI: 10.6084/m9.figshare.4557592.v1
title: Disrupted trophic interactions affect recruitment of boreal deciduous and coniferous trees in northern Europe

description: This depository contains two data sets:<br>1. Collected and analysed field data related to herbivore browsing, and2. The 50 x 50 km fishnet (GIS data) as applied in:Per Angelstam P., Manton M., Pedersen S. and M. Elbakidze 2017. Disrupted trophic interactions affect recruitment of boreal deciduous and coniferous trees in northern Europe. Ecological Applications xxPlease note, other data used in this publication can be sourced from the original data sources (see cited literature for more information).
DOI: 10.6084/m9.figshare.11716641.v1
title: On Racial Disparities in Recent Fatal Police Shootings

description: Fatal police shootings in the United States continue to be a polarizing social and political issue. Clear disagreement between racial proportions of victims and nationwide racial demographics together with graphic video footage has created fertile ground for controversy. However, simple population level summary statistics fail to take into account fundamental local characteristics such as county-level racial demography, local arrest demography, and law enforcement density. Using data on fatal police shootings between January 2015 and July 2016, I implement a number of straightforward resampling procedures designed to carefully examine how unlikely the victim totals from each race are with respect to these local population characteristics if no racial bias were present in the decision to shoot by police. I present several approaches considering the shooting locations both as fixed and also as a random sample. In both cases, I find overwhelming evidence of a racial disparity in shooting victims with respect to local population demographics but substantially less disparity after accounting for local arrest demographics. I conclude the analyses by examining the effect of police-worn body cameras and find no evidence that the presence of such cameras impacts the racial distribution of victims. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.15097836.v1
title: Prostate cancer gut microbiota meta-data file 1

description: Meta Dataset for Gut microbiota among Prostate cancer patients at Uganda Cancer Institute
DOI: 10.6084/m9.figshare.16577951.v1
title: Supplementary Material for: Acute Kidney Injury in Extracorporeal Membrane Oxygenation Patients: National Analysis of Impact of Age

description: <b><i>Background:</i></b> The aim of this study was to determine epidemiology and outcomes of acute kidney injury (AKI) in patients on extracorporeal membrane oxygenation (ECMO) and to assess if age modifies the effect of AKI on mortality. <b><i>Methods:</i></b> Using National (Nationwide) Inpatient Sample Database for hospitalizations in the USA from 2003 to 2014, we identified adult patients on ECMO support. Using International Classification of Diseases 9th Revision, we assessed the rates of AKI and AKI requiring dialysis (AKI-D) among them and associated survival. We used a multivariable logistic regression to identify risk factors of and differential effect of age on mortality from AKI. <b><i>Results:</i></b> AKI was seen in 63.9% of 17,942 ECMO hospitalizations: 21.9% of those with AKI required dialysis. The percentage of those with AKI increased steadily. Mortality was higher in those with AKI, with highest in those with AKI-D (70.8% vs. 61.7%; <i>p</i> &lt; 0.001). While both age and AKI were independent predictors of mortality, age was neither a risk factor for AKI nor did it modify the effect of AKI on mortality. <b><i>Conclusions:</i></b> AKI is common and is increasing among patients on ECMO support. Patients on ECMO have high mortality and AKI is an independent predictor of mortality. Though age is also an independent predictor of mortality in patients on ECMO, it is neither a predictor of AKI nor does not modify the relationship between AKI and mortality.
DOI: 10.6084/m9.figshare.19359002.v5
title: Data: Climatic niche dynamics of Spartina alterniflora

description: Details of occurrence data used to map the climatic niche dynamics of <i>Spartina alterniflora</i>.<br>
DOI: 10.6084/m9.figshare.28720847.v2
title: 沉水大型植物通过增强植物性状网络连通性与增加沉积物资源来促进养分利用效率和生长

description: 沉水大型植物 养分利用效率 ， 植物性状网络连通性 ， 沉积物资源
DOI: 10.6084/m9.figshare.10323836.v1
title: Modeled habitat linkages for three wildlife species, along with climate change and land-use change threats

description: Modeled habitat linkages for three wildlife species, along with information about climate change threat, land-use change threat, and existing protection status for each. Species are: American black bear (Ursus americanus americanus), Rafinesque's big-eared bat (Corynorhinus rafinesquii), and timber rattlesnake (Crotalus horridus). These data were produced for, and described in detail by, Costanza et al. in an unpublished manuscript
DOI: 10.6084/m9.figshare.25893391.v1
title: Zotero_BD.RSL

description: Información referente a la Base de Datos de los artículos y el archivo ZIP de Zotero, empleados para realizar la Revisión Sistemática de la Literatura sobre la Inteligencia de Negocios para la Gestión Hospitalaria.
DOI: 10.6084/m9.figshare.27637350.v1
title: Supplementary Material for: Feasibility and psychometric properties of Integrated Care for Older People Screening Tool for Taiwanese (ICOPES-TW) cognitive screening test

description: Introduction: Intrinsic capacity, a concept proposed by the World Health Organization, includes multidimensions to better understand older adults’ health conditions for successful healthy aging. One of the key dimensions of intrinsic capacity is cognition. The present study aimed to examine if the cognitive test in Integrated Care for Older People Screening Tool for Taiwanese (ICOPES-TW) is a suitable instrument for screening cognition impairment. Methods: Older adults from community or medical center settings in Tainan were recruited (n=553; mean±SD age=75.80±8.32; 60.8% females). All participants were administered the ICOPES-TW cognitive test, the Mini-Mental State Examination (MMSE), Lawton’s Instrumental Activities of Daily Living (IADL), and Barthel Index (BI) in an in-person interview conducted by a well-trained research assistant. Results: The ICOPES-TW cognitive test was highly correlated with the MMSE total score (r=-0.752) and moderately correlated with IADL (r=-0.426) and BI scores (r=-0.390). When using a cutoff score of 1 for the ICOPES-TW cognitive test, its accuracy to identify cognitive impairment defined by the MMSE was 60% (sensitivity=0.98, specificity=0.41). When using cutoff score of 2, the accuracy was 83% (sensitivity=0.69, specificity=0.90). Moreover, the ICOPES-TW cognitive test had similar properties to the MMSE in terms of known-group validity (distinguishing different age and educational level groups). Conclusions: Using ICOPES-TW cognitive test with appropriate cutoff point in different healthcare settings could help providers and researchers quickly identify if an older adult has a cognitive impairment. However, the screening ability of ICOPES-TW cognitive test was deemed fair but future studies are recommended to help improve it.
DOI: 10.6084/m9.figshare.28730537.v4
title: Adjusted Dataset of Performance Change (Stage Comparisons for Groups)

description: Get a description later.
DOI: 10.6084/m9.figshare.23974377.v1
title: Supplementary Material for: Safety of Tigecycline in Patients on Antithrombotic Therapy: A Single Center Retrospective Study

description: Introduction: To investigate the risk factors of tigecycline-induced hypofibrinogenemia, and to evaluate the safety of tigecycline with concomitant antithrombotic drugs. Methods: We performed a retrospective analysis of patients who received tigecycline for more than 3 days between January 2015 and June 2019. Clinical and laboratory data were collected including fibrinogen concertation, tigecycline dose, duration of treatment, disease severity, complete blood count, indicators of infection, liver and renal function. Risk factors of hypofibrinogenemia were analyzed by univariate and multivariate analysis. To evaluate the safety of tigecycline and concomitant antithrombotic drugs, bleeding events were assessed by comparing the decline in hemoglobin and the amount of red blood cell transfusion in patients with antithrombotic drugs and those without. Results: This study included a total of 68 cases, 20 of which experienced hypofibrinogenemia while receiving tigecycline treatment. Duration of treatment, cefoperazone/sulbactam combination therapy, and fibrinogen levels prior to initiation of tigecycline were risk factors associated with tigecycline-induced hypofibrinogenemia. There were 26 recorded bleeding incidents, 25 of which happened before the start of tigecycline. Antithrombotic and non-antithrombotic patients did not differ in their hemoglobin decline or need for red blood cell transfusions while taking tigecycline. Conclusion: A longer treatment duration, cefoperazone/sulbactam combination therapy, and a lower level of fibrinogen level before tigecycline were associated with an increased risk of tigecycline induced hypofibrinogenemia. A combination of antithrombotic drugs and tigecycline did not aggravate the bleeding events during tigecycline treatment.
DOI: 10.6084/m9.figshare.22664890.v1
title: Supplementary Material for: Pilot study of a wearable hydration monitor in haemodialysis patients

description: Abstract Introduction We aimed to assess the validity and reproducibility of a wearable hydration device in a cohort of maintenance dialysis patients. Methods We conducted a prospective, single-arm observational study on 20 haemodialysis patients between January-June 2021 in a single centre. A prototype wearable infrared spectroscopy device, termed the Sixty device, was worn on the forearm during dialysis sessions and nocturnally. Bioimpedance measurements were performed 4 times using the body composition monitor (BCM) over 3 weeks. Measurements from the Sixty device were compared with the BCM overhydration index (litres) pre- and post-dialysis and with standard haemodialysis parameters. Results 12 out of 20 patients had usable data. Mean age was 52 ± 12.4 years. The overall accuracy for predicting pre-dialysis categories of fluid status using Sixty was 0.55 [ᴋ= 0.00; 95% CI -0.39 – 0.42]. The accuracy for the prediction of post-dialysis categories of volume status was low [accuracy = 0.33, ᴋ = 0.08; 95% CI = -0.13 to 0.3]. Sixty outputs at the start and end of dialysis were weakly correlated with pre- and post-dialysis weights (r = 0.27 and r = 0.27, respectively), as well as weight loss during dialysis (r= 0.31), but not ultrafiltration volume (r = 0.12). There was no difference between the change in Sixty readings overnight, and the change in Sixty readings during dialysis (mean difference 0.09 ± 1.5 kg), [t(39) = 0.38, p = 0.71]. Conclusion A prototype wearable infrared spectroscopy device was unable to accurately assess changes in fluid status during or between dialysis sessions. In the future, hardware development and advances in photonics may enable the tracking of interdialytic fluid status.
DOI: 10.6084/m9.figshare.23656896.v1
title: Truth matrix

description: Truth matrix with all the generated codes derived from the data categorization process.
DOI: 10.6084/m9.figshare.7530593.v2
title: Maslows hierarchy of needs in economic education - a pyramid of doubts DATA FINAL.xlsx

description: Hierarchy of needs by A. H. Maslow usually brings images of pyramids into the minds of economists and their students. In contrast to economic textbooks, this famous depiction was, surprisingly, never used in Maslow’s works. Does it create an intended understanding of the theory or does it actually create misconceptions thereof?Research views the pyramid as an educational metaphor and claims that its unconsidered overtaking into instruction can be misleading. Using a sample of 89 students and their view of the theory, being primed by either the visualization of the pyramid or the list of the hierarchy of needs, it delivers results on the perceived importance of lower needs and confirms necessity of careful handling of aspect-highlighting and aspect-hiding nature of metaphors in education.
DOI: 10.6084/m9.figshare.10095137.v1
title: Table 1

description: Table 1
DOI: 10.6084/m9.figshare.11948781.v1
title: Supplementary Material for: Alexithymia Is Associated with Altered Cortical Thickness Networks in the General Population

description: <b><i>Background:</i></b> Alexithymia is a personality trait characterized by difficulties in identifying and describing emotions and associated with various psychiatric disorders. Neuroimaging studies found evidence for morphological and functional brain alterations in alexithymic subjects. However, the neurobiological mechanisms underlying alexithymia remain incompletely understood. <b><i>Methods:</i></b> We study the association of alexithymia with cortical correlation networks in a large community-dwelling sample of the Study of Health in Pomerania. Our analysis includes data of <i>n</i> = 2,199 individuals (49.4% females, age = 52.1 ± 13.6 years) which were divided into a low and high alexithymic group by a median split of the Toronto Alexithymia Scale. Cortical correlation networks were constructed based on the mean thicknesses of 68 regions, and differences in centralities were investigated. <b><i>Results:</i></b> We found a significantly increased centrality of the right paracentral lobule in the high alexithymia network after correction for multiple testing. Several other regions with motoric and sensory functions showed altered centrality on a nominally significant level. <b><i>Conclusions:</i></b> Finding increased centrality of the paracentral lobule, a brain area with sensory as well as motoric features and involvement in bowel and bladder voiding, may contribute to explain the association of alexithymia with functional somatic disorders and chronic pain syndromes.
DOI: 10.6084/m9.figshare.89655.v2
title: Repeating Crumley: Tobacco Seed Growth in D2O

description: In 1950 Crumley et al did a series of experiments where they tested the growth rate of several plants in differing amounts of D2O. They used H2O, 33% D2O, 63% D2O, and 99% D2O (mixtures with H2O) and discovered that growth rates were drastically slower in increasing amounts of D2O. I was asked to repeat their experiment with just tobacco seeds and for the most part I validated their claims with one crucial exception: tobacco seeds in 99% D2O don't grow at all! All experimental information is kept in an open notebook online with links to the experiments. The links contain information about the experimental summary, and links to each individual trial which will allow you access to see the setup and day to day results of each trial. Feel free to browse around and provide feedback.
DOI: 10.6084/m9.figshare.1254622.v1
title: League of Legends Game

description: This dataset contains start & end timestamps for League of Legends games played via the Duowan plugin. We randomly sampled 100k user_ids and gathered all games associated with those users.
DOI: 10.6084/m9.figshare.27643716.v1
title: Sequencing of gut microbiota<b> </b>and metabolomic data

description: intestinal microbiome composition processed using 16S rDNA sequencing; serum metabolites were detected using UHPLC-OE-MS non-target metabolomics technology