cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.74j3t9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Cyclura rileyi)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080655-250717081556266/datasets/export for details.
DOI: 10.15468/dl.4stscv
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bromelia pinguin",
 "Country is Cuba",
 "HasCoordinate is true"
 ]
}

 The dataset includes 54 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080654-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rwzk89
title: Occurrence Download

description: A dataset containing 189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dianthus ciliatus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 189 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080656-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sf23ch
title: Occurrence Download

description: A dataset containing 225364 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Peronosporea"
 ]
}

 The dataset includes 225364 records from 578 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011187-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.112022
title: Additional Research data supporting "Human placental cells are resistant to SARS-CoV-2 infection and replication"

description: Aim: Quantify the permissiveness of placental cells to SARS-CoV-2 infection and ability to support viral release Data Collection: For tissue processing, decidua was removed and the tissue was washed in PBS for 10min. Villi were scraped and digested in 0.2% Trypsin/0.02% EDTA at 37°C for 7/15min. The digest was filtered through a gauze and quenched with FBS. Undigested material was further digested with 1mg/ml Collagenase V supplemented with 10mg/ml DNase for 30/40min at 37°C. After filtering and washing, layer the cell suspension on to a Pancoll gradient ad centrifuge without break for 20min at 3000rpm. For more details and gating strategies, refer to Appios et al., 2021 (Bio Protoc) and Thomas et al., 2021 (JEM. For tissue sections, slides were fixed and permeabilised in ice-cold acetone (5min), washed in PBS, blocked in 2% serum (20min), incubated overnight at 4°C with primary antibodies - ACE2 (rabbit, ab15348), cytokeratin 7 (mouse, M7018). Slides were washed twice in PBS, and incubated with secondary/conjugated antibodies (anti-rabbit AF488, (A-11008), anti-mouse AF555 (A-31570) and CD31-AF700 (303133)) for 1hr in the dark. Slides were washed twice before staining with DAPI (D9542) and mounted ready for imaging. For in vitro assays, cells were infected with BetaCoV (B.1.1.7) strain at MOI 1 for 1hr. Inoculum was removed and cells washed with PBS before replacing with media containing 2% serum. Cells were fixed at 24h in 4% PFA. Cells were permeabilised (0.1% saponin, 10min), and blocked (1% BSA and 0.01% saponin, 20min) before incubating with the primary antibody SARS-CoV-2 spike protein (mouse, GTX632604) for 1hr. After 3 washes (5min each) in blocking solution, cells were incubated with the secondary antibody, anti-mouse AF488 (A-32766) for 45min in the dark. After washing 3 times, nuclei were stained with Hoechst 33342 (62249) for 5min, washed with PBS and maintained in PBS ready for imaging. Data generation: Human primary Hofbauer cells were sorted and data recorded on the BD FACS Aria III using the BD FACSDiva™ software. Tissue sections and cells from infection assays were imaged using the Zeiss LSM780 AxioObserver. Brightness and contrast of images were adjusted using the Brightness/Contrast tool in the FiJi (Just ImageJ) software. This data is linked to the repository (https://doi.org/10.17863/CAM.106485) and provides the additional raw .lsm files of all images used in the paper (https://doi.org/10.12688/wellcomeopenres.20514.1).
DOI: 10.5281/zenodo.16751795
title: Fenton and Anaerobic Digestion Experiments Using Reused or Scrap Zero-Valent Iron (ZVI) on Hospital and Food Waste Effluents

description: This dataset supports Deliverable 5.1 and Deliverable 5.2 of the Horizon Europe project CARING NATURE (Grant Agreement No. 101137340). These deliverables focus on evaluating innovative, sustainable methods for hospital and food waste treatment using reused or scrap zero-valent iron (ZVI). Specifically, the data includes results from Fenton oxidation experiments targeting hospital wastewater, anaerobic efflunets and anaerobic digestion tests of food waste, both with and without ZVI supplementation. The findings contribute to the project's objective of reducing the environmental footprint of healthcare facilities by promoting circular and low-cost treatment strategies based on waste valorization and integrated oxidation–digestion processes.
DOI: 10.5281/zenodo.16751794
title: Fenton and Anaerobic Digestion Experiments Using Reused or Scrap Zero-Valent Iron (ZVI) on Hospital and Food Waste Effluents

description: This dataset supports Deliverable 5.1 and Deliverable 5.2 of the Horizon Europe project CARING NATURE (Grant Agreement No. 101137340). These deliverables focus on evaluating innovative, sustainable methods for hospital and food waste treatment using reused or scrap zero-valent iron (ZVI). Specifically, the data includes results from Fenton oxidation experiments targeting hospital wastewater, anaerobic efflunets and anaerobic digestion tests of food waste, both with and without ZVI supplementation. The findings contribute to the project's objective of reducing the environmental footprint of healthcare facilities by promoting circular and low-cost treatment strategies based on waste valorization and integrated oxidation–digestion processes.
DOI: 10.15468/dl.x68ram
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Capricornis sumatraensis)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019235-250802193616735/datasets/export for details.
DOI: 10.15468/dl.88qr9d
title: Occurrence Download

description: A dataset containing 436 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Capricornis sumatraensis)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 436 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019236-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tuw863
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "HasCoordinate is TRUE",
 "TaxonKey is one of (Hypnea charoides)"
 ]
}

 The dataset includes 22 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019239-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15472399
title: Ne, Ar and N analysis using the Nu Noblesse-HR mass spectrometer

description: These tables dsplay the abundances of Ne, Ar and N (in moles) and their isotopic ratios analyzed at CRPG with the Nu Noblesse-HR mass spectrometer in 4 Osiris-REx samples
DOI: 10.5281/zenodo.15472400
title: Ne, Ar and N analysis using the Nu Noblesse-HR mass spectrometer

description: These tables dsplay the abundances of Ne, Ar and N (in moles) and their isotopic ratios analyzed at CRPG with the Nu Noblesse-HR mass spectrometer in 4 Osiris-REx samples
DOI: 10.15468/dl.esmjhc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Capricornis sumatraensis)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019237-250802193616735/datasets/export for details.
DOI: 10.6084/m9.figshare.29520716.v1
title: Partial removal of visceral epididymal white adipose tissue in obese Ldlr-/-.Leiden mice alters adipokine secretion and improves cerebrovascular health

description: Visceral white adipose tissue (WAT) dysfunction is thought to contribute to obesity-related brain impairments but no causal relationship has been demonstrated yet. We herein investigated the impact of visceral epididymal WAT (eWAT) lipectomy on brain health and obesity-associated comorbidities (liver steatosis, atherosclerosis, WAT dysfunction) in obese Ldlr-/-.Leiden mice. To do so, high-fat diet (HFD)-fed mice with manifest obesity underwent sham surgery or partial removal (~70%) of eWAT. A separate group of mice was kept on chow diet (control). Liver disease, atherosclerosis and three WAT depots were examined histologically, and WAT biopsies were also used for <i>ex vivo</i> culture experiments. Brain structure and function were monitored longitudinally using neuroimaging and cognitive tests. Brain pathology was further analyzed using histological analyses and hippocampal RNA sequencing. The portion of eWAT depot which was surgically removed appeared to secrete multiple adipokines and pro-inflammatory factors <i>ex vivo</i>. Histological analyses at the end of the study showed that partial eWAT lipectomy had no effect on the development of liver pathology and atherosclerosis, but it reduced the number of severely hypertrophic adipocytes in the residual-eWAT. This was consistent with reduced secretion of adipokines (e.g., leptin, adiponectin) and pro-inflammatory mediators (e.g., PAI-1, MIP-1α, IL-17) in <i>ex vivo</i> residual-eWAT culturing experiments. Importantly, partial eWAT lipectomy also alleviated HFD-induced adverse effects on hippocampal vasoreactivity, increased cortico-hippocampal (resting-state) functional connectivity and prevented the development of sedentary behavior. Hence, partial eWAT lipectomy in mice with manifest obesity partly prevents hippocampal cerebrovascular disturbances, demonstrating a causal involvement of visceral WAT in obesity-associated brain impairments. The beneficial effects of eWAT lipectomy may, at least partly, be mediated by the observed changes in the release of adipokines and inflammatory mediators.
DOI: 10.34740/kaggle/dsv/12689521
title: Daily Public Opinion on Israel-Palestine War
DOI: 10.5281/zenodo.16751775
title: TP53 Mutations as Drivers of Chordoma Progression and Hallmarks of Aggressive Chordoma

description: TP53 Mutations as Drivers of Chordoma Progression and Hallmarks of Aggressive Chordoma

Methods

For the original dataset FFPE-derived DNA from three tumor samples of DC, one PDC, and 32 CCs was analyzed for the coding sequence of 664 cancer-related genes using the SeqCap EZ Custom Enrichment Kit (Roche, Basel, Switzerland). A complete list of genes is presented in details previously. One additional sample of primary CC and recurrent DC, DNA from a blood sample, as well as primary and recurrent tumors (CC and DC, respectively) from one patient, was subjected to whole-exome sequencing (WES). Exome enrichment was performed using the Agilent SureSelectXT Reagent Kit and Agilent SureSelect Human All ExonV6 (Cat No. G9611B). A sequencing library was constructed using the Novogene NGS DNA Library Prep Set (Cat No.PT004). Libraries were sequenced using the paired end 150 bp mode on Illumina NovaSeq X Plus instrument (Illumina, San Diego, CA). The procedures were performed by an NGS service provider, Novogene.

For the replication dataset, publically available data from Bai et al. were downloaded.

Whole-Genome Sequencing, panel sequencing, and WES datasets were aligned to the GRCh38p11 human reference genome, utilizing BWA. For WGS and WES data, somatic single nucleotide variants and small insertions/deletions were called using Strelka and Manta. Copy number alterations were identified and analyzed using the FACETS R package and samples with low tumor purity were rejected (ten WGS samples).

For panel sequencing data, given the absence of matched normal controls, variant calling was performed using Scalpel and bcftools. Variant annotation was subsequently conducted with vcf2maf, incorporating the Variant Effect Predictor (VEP). Variants were filtered at a minimum of 14x coverage and a Variant Allele Frequency (VAF) of at least 0.2, with a ratio of VAF in tumor to normal control of at least 4. For samples without a normal control, common variants were rejected, and SNPs were manually checked for benign variation.

Data



Table with somatic mutations from the ZJ case (ZJsomatic.zip)

Table with copy-number events from the ZJ case (ZJsegments.csv)

Table with somatic mutations from the mutation panel (PanelSomatic.zip)

Table with somatic mutations from the Bai et al. (BaiSomatic.zip)
DOI: 10.15468/dl.hbudwn
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Compsura gorgonae)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019240-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18167/dvn1/0eedag
title: Antananarivo - Madagascar - build-up area evolutions map between 2003 - 2017 - 2022

description: This map shows the evolution of the built-up area of Antananarivo, capital of Madagascar, between 2003, 2017 and 2022. In ESRI shape vector format, this map results from the crossing of the following land use maps. Dupuy, Stéphane; Defrise, Laurence; Burnod, Perrine, 2019, "Antananarivo - Madagascar - Land use change map between 2003 and 2017", https://doi.org/10.18167/DVN1/VQZZI0 , CIRAD Dataverse, V2 Dupuy, Stéphane; Andriamanga, Andoniaina Valérie; Gaetano, Raffaele; Burnod, Perrine, 2022, "Antananarivo - 2022 Land cover map", https://doi.org/10.18167/DVN1/RE1MDM , CIRAD Dataverse, V3
DOI: 10.6084/m9.figshare.29835524
title: Supplementary Material for: Intensive vs. Less Intensive Blood Pressure Control in Chronic Kidney Disease: A Systematic Review and Meta-analysis of Clinical Trials

description: Background: Optimal blood pressure (BP) targets in patients with chronic kidney disease (CKD) stage 3 or higher remain controversial, with uncertainty about whether intensive BP control improves outcomes compared to standard control. 

Summary: This systematic review and meta-analysis included 11 randomized controlled trials (RCTs) with 8,740 participants, comparing intensive versus standard BP targets in CKD stage 3+ patients. Meta-analysis using a random-effects model showed no significant reduction in all-cause mortality with intensive control (RR 0.91, 95% CI 0.73–1.13). Similarly, there were no significant differences in other outcomes. 

Key Messages: Intensive BP control did not improve overall mortality or renal outcomes in CKD patients. Further large, long-term studies are warranted.
DOI: 10.6084/m9.figshare.29835524.v1
title: Supplementary Material for: Intensive vs. Less Intensive Blood Pressure Control in Chronic Kidney Disease: A Systematic Review and Meta-analysis of Clinical Trials

description: Background: Optimal blood pressure (BP) targets in patients with chronic kidney disease (CKD) stage 3 or higher remain controversial, with uncertainty about whether intensive BP control improves outcomes compared to standard control. 

Summary: This systematic review and meta-analysis included 11 randomized controlled trials (RCTs) with 8,740 participants, comparing intensive versus standard BP targets in CKD stage 3+ patients. Meta-analysis using a random-effects model showed no significant reduction in all-cause mortality with intensive control (RR 0.91, 95% CI 0.73–1.13). Similarly, there were no significant differences in other outcomes. 

Key Messages: Intensive BP control did not improve overall mortality or renal outcomes in CKD patients. Further large, long-term studies are warranted.
DOI: 10.15468/dl.2c3n75
title: Occurrence Download

description: A dataset containing 1172 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Petroica pusilla)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 1172 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019241-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16751989
title: Image stack of µCT scan of posterior trunk vertebrae of Palaeopython schaali SMNK-PAL 2347

description: Zip file containing image stack of µCT scan of posterior trunk vertebrae of Palaeopython fischeri SMNK-PAL 2347 together with parameter file and VG Studio MAX file.
DOI: 10.5281/zenodo.16751990
title: Image stack of µCT scan of posterior trunk vertebrae of Palaeopython schaali SMNK-PAL 2347

description: Zip file containing image stack of µCT scan of posterior trunk vertebrae of Palaeopython fischeri SMNK-PAL 2347 together with parameter file and VG Studio MAX file.
DOI: 10.15468/dl.vjhs5p
title: Occurrence Download

description: A dataset containing 1174 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Harpactes erythrocephalus",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1174 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019242-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uqneuu
title: Occurrence Download

description: A dataset containing 1289 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is India",
 "DatasetKey is FishBase Database",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1289 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019243-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7tphkn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Capricornis sumatraensis)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019245-250802193616735/datasets/export for details.
DOI: 10.15468/dl.yrqqdp
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scopelus coccoi"
 ]
}

 The dataset includes 14 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019244-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.