cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4121/uuid:d3dd8165-cc4e-4e2a-ab12-82198ab6dc39
title: GOTOV Human Physical Activity and Energy Expenditure Dataset on Older Individuals

description: Wearable sensor-based data of physical activities and indirect calorimetry for 35 (14 female, 21 male) healthy older individuals (over 60 years old). The data has been collected from different body locations and devices: 3x GeneActives accelerometers (ankle, wrist, and chest), 1x Equivital (chest) and COSMED (mask and belt on chest). The 35 individuals followed a protocol of 16 activities of daily living for approximately an hour and a half in a semi-lab environment. These include different types or paces of indoor and outdoor activities with low (lying down, sitting), mid (standing, household activities) and high (walking and cycling) levels of intensity. Additionally, some activities can be specified at different granularities. The study took place at LUMC, between February and May 2015.
DOI: 10.6084/m9.figshare.7931423
title: ROADKILL RISK AND POPULATION VULNERABILITY IN EUROPEAN BIRDS AND MAMMALS

description: Datasets related to the publication <i>Grilo C, Koroleva E, Andrášik R, Bíl M, González-Suárez M 2020. Roadkill risk and population vulnerability in European birds and mammals. Frontiers in Ecology and the Environment. </i> <br>Data include: birds and mammals roadkill data, birds and mammals traits, predicted roadkill rates for birds and mammals, ranking of birds and mammals regarding the vulnerability to roadkill and shapefiles on the estimated number of individuals roadkilled on birds and mammals and number of vulnerable bird and mammal species.Further details on the dataset at the supplementary material of the publication (WebPanel 1).<strong> </strong><br>
DOI: 10.5678/1y06-n068
title: San Francisco Matrixplots tree species trait means and basal areas 2008 and 2016
title: SFMatrix traits and basal area 2008 and 2016

description: This data set contains tree basal area data for the 18 San Francisco Matrix plots for 2008 and 2016, and the mean trait information for the tree species present in these plots.
DOI: 10.5281/zenodo.5899573
title: Data for: Evaluation of a full-scale wastewater treatment plant with ozonation and different post-treatments using a broad range of in vitro and in vivo bioassays

description: This repository contains research data linked to the following publication: Kienle, C., Werner, I., Fischer, S., Lüthi, C., Schifferli, A., Besselink, H., Langer, M., McArdell, C.S. and Vermeirssen, E.L.M. 2022. Evaluation of a full-scale wastewater treatment plant with ozonation and different post-treatments using a broad range of <em>in vitro</em> and <em>in vivo</em> bioassays. Water Research, 118084. https://doi.org/10.1016/j.watres.2022.118084 Abstract: Micropollutants present in the effluent of wastewater treatment plants (WWTPs) after biological treatment are largely eliminated by effective advanced technologies such as ozonation. Discharge of contaminants into freshwater ecosystems can thus be minimized, while simultaneously protecting drinking water resources. However, ozonation can lead to reactive and potentially toxic transformation products. To remove these, the Swiss Federal Office for the Environment recommends additional "post-treatment" of ozonated WWTP effluent using sand filtration, but other treatments may be similarly effective. In this study, 48 h composite wastewater samples were collected before and after full-scale ozonation, and after post-treatments (full-scale sand filtration, pilot-scale fresh and pre-loaded granular activated carbon, and fixed and moving beds). Ecotoxicological tests were performed to quantify the changes in water quality following different treatment steps. These included standard <em>in vitro</em> bioassays for the detection of endocrine, genotoxic and mutagenic effects, as well as toxicity to green algae and bacteria, and flow-through <em>in vivo</em> bioassays using oligochaetes and early life stages of rainbow trout. Results show that ozonation reduced a number of ecotoxicological effects of biologically treated wastewater by 66 - 93 %: It improved growth and photosynthesis of green algae, decreased toxicity to luminescent bacteria, reduced concentrations of hormonally active contaminants and significantly changed expression of biomarker genes in rainbow trout liver. Bioassay results showed that ozonation did not produce problematic levels of reaction products overall. Small increases in toxicity observed in a few samples were reduced or eliminated by post-treatments. However, only relatively fresh granular activated carbon (analyzed at 13,000 - 20,000 bed volumes) significantly reduced effects additionally (by up to 66 %) compared to ozonation alone. Inhibition of algal photosynthesis, rainbow trout liver histopathology and biomarker gene expression proved to be sufficiently sensitive endpoints to detect the change in water quality achieved by post-treatment.
DOI: 10.5281/zenodo.5899572
title: Data for: Evaluation of a full-scale wastewater treatment plant with ozonation and different post-treatments using a broad range of in vitro and in vivo bioassays

description: This repository contains research data linked to the following publication: Kienle, C., Werner, I., Fischer, S., Lüthi, C., Schifferli, A., Besselink, H., Langer, M., McArdell, C.S. and Vermeirssen, E.L.M. 2022. Evaluation of a full-scale wastewater treatment plant with ozonation and different post-treatments using a broad range of <em>in vitro</em> and <em>in vivo</em> bioassays. Water Research, 118084. https://doi.org/10.1016/j.watres.2022.118084 Abstract: Micropollutants present in the effluent of wastewater treatment plants (WWTPs) after biological treatment are largely eliminated by effective advanced technologies such as ozonation. Discharge of contaminants into freshwater ecosystems can thus be minimized, while simultaneously protecting drinking water resources. However, ozonation can lead to reactive and potentially toxic transformation products. To remove these, the Swiss Federal Office for the Environment recommends additional "post-treatment" of ozonated WWTP effluent using sand filtration, but other treatments may be similarly effective. In this study, 48 h composite wastewater samples were collected before and after full-scale ozonation, and after post-treatments (full-scale sand filtration, pilot-scale fresh and pre-loaded granular activated carbon, and fixed and moving beds). Ecotoxicological tests were performed to quantify the changes in water quality following different treatment steps. These included standard <em>in vitro</em> bioassays for the detection of endocrine, genotoxic and mutagenic effects, as well as toxicity to green algae and bacteria, and flow-through <em>in vivo</em> bioassays using oligochaetes and early life stages of rainbow trout. Results show that ozonation reduced a number of ecotoxicological effects of biologically treated wastewater by 66 - 93 %: It improved growth and photosynthesis of green algae, decreased toxicity to luminescent bacteria, reduced concentrations of hormonally active contaminants and significantly changed expression of biomarker genes in rainbow trout liver. Bioassay results showed that ozonation did not produce problematic levels of reaction products overall. Small increases in toxicity observed in a few samples were reduced or eliminated by post-treatments. However, only relatively fresh granular activated carbon (analyzed at 13,000 - 20,000 bed volumes) significantly reduced effects additionally (by up to 66 %) compared to ozonation alone. Inhibition of algal photosynthesis, rainbow trout liver histopathology and biomarker gene expression proved to be sufficiently sensitive endpoints to detect the change in water quality achieved by post-treatment.
DOI: 10.17029/699cf697-3a36-4c09-bf04-df5f9c8fb9b7
title: Dataset for 'Effects of religiosity and travel desire on COVID-19 vaccination intentions'.

description: Face-to-face and online survey results.
DOI: 10.6084/m9.figshare.18027683
title: Comparative study on matching methods for the distinction of building modifications and replacements based on mul-ti-temporal building footprint data

description: This dataset contains the input data and results used in the paper<br>"Comparative study on matching methods for the distinction of building modifications and replacements based on mul-ti-temporal building footprint data".<br><br>License information:<br><br>The LoD1 data used as input in this study are openly available at Transparenzportal Hamburg (https://transparenz.hamburg.de/),<br>from Freie und Hansestadt Hamburg, Landesbetrieb Geoinformation und Vermessung (LGV), in compliance with the licence dl-de/by-2-0 (https://www.govdata.de/dl-de/by-2-0):)<br><br><br>Content:<br><br>1. Input Footprints of non-identical pairs:<br>input_reference_objects.zip<br><br>2. Results without additional position deviation:<br>results_without_deviation.zip<br><br>3. Results with generated position deviation including geometries:<br>results_with_deviation.zip<br><br><br><br>
DOI: 10.5281/zenodo.5906677
title: Dataset for "Long-term fluxes of carbonyl sulfide and their seasonality and interannual variability in a boreal forest"

description: The final dataset used in manuscript "Long-term fluxes of carbonyl sulfide and their seasonality and interannual variability in a boreal forest" by Vesala et al. (2022). The dataset contains carbonyl sulfide (COS) and carbon dioxide (CO2) eddy covariance flux data and in-situ meteorological data measured at Hyytiälä forest in Juupajoki, Southern Finland, as well as meteorological drivers for SiB4 simulations at the Hyytiälä grid cell from January 2013 to December 2017. Raw data are available upon request from the author.
DOI: 10.6084/m9.figshare.13402070
title: GLOBathy Waterbodies Maximum Depth and Geophysical Parameters

description: This zip file includes spreadsheets that provide estimations of maximum depth, as well as other related geophysical information for each waterbody in the dataset.
DOI: 10.6084/m9.figshare.13404635
title: GLOBathy Bathymetry Rasters

description: Raster files of the GLOBathy bathymetric maps in Tagged Image File Format (TIFF) format for each individual waterbody in 1 arc-second resolution and in the WGS84 projection system.
DOI: 10.6084/m9.figshare.13402124
title: GLOBathy Waterbodies head-Area-Volume Relationships

description: This file provides estimations of head-Area-Volume (h-A-V) relationships in form of polynomial functions A=f(h) and V=f(h), derived from the bathymetric maps of each waterbody in the Network Common Data Form (NetCDF) format.
DOI: 10.6084/m9.figshare.13402124.v1
title: GLOBathy Waterbodies head-Area-Volume Relationships

description: This file provides estimations of head-Area-Volume (h-A-V) relationships in form of polynomial functions A=f(h) and V=f(h), derived from the bathymetric maps of each waterbody in the Network Common Data Form (NetCDF) format.
DOI: 10.6084/m9.figshare.19071191
title: Supplementary Material for: Quantitative Mass Spectrometry Normalization in Urine Biomarker Analysis in Nephrotic Syndrome

description: Chronic kidney disease (CKD) affects 30 million adults, costs ~$79 billion dollars (2016) in Medicare expenditures, and is the ninth leading cause of death in the United States. The disease is silent or undiagnosed in almost half of people with severely reduced kidney function. Urine provides an ideal biofluid that is accessible to high-sensitivity mass spectrometry-based proteomic interrogation and is an indicator of renal homeostasis. While the accurate and precise diagnosis and better disease management of CKD can be aided using urine biomarkers, their discovery in excessive protein or nephrotic urine samples can present challenges. In this work we present a mass spectrometry-based method utilizing multiplex tandem mass tag (TMT) quantification and improved protein quantification using reporter ion normalization to urinary creatinine to analyze urinary proteins from patients with a form of nephrotic syndrome (FSGS). A comparative analysis was performed for urine from patients in remission versus active disease flare. Two-dimensional LC-MS/MS TMT quantitative analysis identified over 1058 urine proteins, 580 proteins with 2 peptides or greater and quantifiable. Normalization of TMT abundance values to creatinine per ml of urine concentrated reduced variability in 2D-TMT-LC-MS/MS experiments. Univariate and multivariate analyses showed that 27 proteins were significantly increased in proteinuric disease flare. Hierarchical heatmap clustering showed that SERPINA1 and ORM1 were &gt;1.5 fold increased in active disease versus remission urine samples. ELISA validation of SERPINA1 and ORM1 abundance agreed with our quantitative TMT proteomics analysis. These findings provide support for the utility of this method for identification of novel diagnostic markers of CKD and identify SERPINA1 and ORM1 as promising candidate diagnostic markers for FSGS.
DOI: 10.6084/m9.figshare.19071191.v1
title: Supplementary Material for: Quantitative Mass Spectrometry Normalization in Urine Biomarker Analysis in Nephrotic Syndrome

description: Chronic kidney disease (CKD) affects 30 million adults, costs ~$79 billion dollars (2016) in Medicare expenditures, and is the ninth leading cause of death in the United States. The disease is silent or undiagnosed in almost half of people with severely reduced kidney function. Urine provides an ideal biofluid that is accessible to high-sensitivity mass spectrometry-based proteomic interrogation and is an indicator of renal homeostasis. While the accurate and precise diagnosis and better disease management of CKD can be aided using urine biomarkers, their discovery in excessive protein or nephrotic urine samples can present challenges. In this work we present a mass spectrometry-based method utilizing multiplex tandem mass tag (TMT) quantification and improved protein quantification using reporter ion normalization to urinary creatinine to analyze urinary proteins from patients with a form of nephrotic syndrome (FSGS). A comparative analysis was performed for urine from patients in remission versus active disease flare. Two-dimensional LC-MS/MS TMT quantitative analysis identified over 1058 urine proteins, 580 proteins with 2 peptides or greater and quantifiable. Normalization of TMT abundance values to creatinine per ml of urine concentrated reduced variability in 2D-TMT-LC-MS/MS experiments. Univariate and multivariate analyses showed that 27 proteins were significantly increased in proteinuric disease flare. Hierarchical heatmap clustering showed that SERPINA1 and ORM1 were &gt;1.5 fold increased in active disease versus remission urine samples. ELISA validation of SERPINA1 and ORM1 abundance agreed with our quantitative TMT proteomics analysis. These findings provide support for the utility of this method for identification of novel diagnostic markers of CKD and identify SERPINA1 and ORM1 as promising candidate diagnostic markers for FSGS.
DOI: 10.25500/edata.bham.00000778
title: Appendix data for "A sustainability-based model for robotic disassembly sequence planning in remanufacturing using the Bees Algorithm" submitted to MIM 2022
DOI: 10.6084/m9.figshare.17169341
title: Table S2 for paper: Assessment of the performance of different imputation methods for low-coverage sequencing in Holstein cattle

description: Table S2
DOI: 10.6084/m9.figshare.17169341.v1
title: Table S2 for paper: Assessment of the performance of different imputation methods for low-coverage sequencing in Holstein cattle

description: Table S2
DOI: 10.6084/m9.figshare.17169344
title: Table S3 for paper: Assessment of the performance of different imputation methods for low-coverage sequencing in Holstein cattle

description: Table S3
DOI: 10.6084/m9.figshare.17169344.v2
title: Table S3 for paper: Assessment of the performance of different imputation methods for low-coverage sequencing in Holstein cattle

description: Table S3
DOI: 10.6084/m9.figshare.17169344.v1
title: Table S3 for paper: Assessment of the performance of different imputation methods for low-coverage sequencing in Holstein cattle

description: Table S3
DOI: 10.6084/m9.figshare.17169347
title: Table S4 for paper: Assessment of the performance of different imputation methods for low-coverage sequencing in Holstein cattle

description: Table S4
DOI: 10.6084/m9.figshare.17169347.v2
title: Table S4 for paper: Assessment of the performance of different imputation methods for low-coverage sequencing in Holstein cattle

description: Table S4
DOI: 10.6084/m9.figshare.17169347.v1
title: Table S4 for paper: Assessment of the performance of different imputation methods for low-coverage sequencing in Holstein cattle

description: Table S4
DOI: 10.6084/m9.figshare.17169350
title: Table S5 for paper: Assessment of the performance of different imputation methods for low-coverage sequencing in Holstein cattle

description: Table S5
DOI: 10.6084/m9.figshare.17169350.v2
title: Table S5 for paper: Assessment of the performance of different imputation methods for low-coverage sequencing in Holstein cattle

description: Table S5
DOI: 10.6084/m9.figshare.17169350.v1
title: Table S5 for paper: Assessment of the performance of different imputation methods for low-coverage sequencing in Holstein cattle

description: Table S5
DOI: 10.6084/m9.figshare.17169353
title: Table S6 for paper: Assessment of the performance of different imputation methods for low-coverage sequencing in Holstein cattle

description: Table S6
DOI: 10.6084/m9.figshare.17169353.v2
title: Table S6 for paper: Assessment of the performance of different imputation methods for low-coverage sequencing in Holstein cattle

description: Table S6
DOI: 10.6084/m9.figshare.17169353.v1
title: Table S6 for paper: Assessment of the performance of different imputation methods for low-coverage sequencing in Holstein cattle

description: Table S6
DOI: 10.6084/m9.figshare.19070174.v1
title: Urinary proteomis of neonatal donkeys and adult donkeys

description: All urinary proteins identified in this study and the protein annotations were listed in the dataset.
DOI: 10.5281/zenodo.5906705
title: Dataset for "Long-term fluxes of carbonyl sulfide and their seasonality and interannual variability in a boreal forest"

description: The final dataset used in manuscript "Long-term fluxes of carbonyl sulfide and their seasonality and interannual variability in a boreal forest" by Vesala et al. (2022). The dataset contains carbonyl sulfide (COS) and carbon dioxide (CO2) eddy covariance flux data and in-situ meteorological data measured at Hyytiälä forest in Juupajoki, Southern Finland, as well as meteorological drivers for SiB4 simulations and SiB4 simulated COS flux at the Hyytiälä grid cell from January 2013 to December 2017. Raw data are available upon request from the author.
DOI: 10.5281/zenodo.5906676
title: Dataset for "Long-term fluxes of carbonyl sulfide and their seasonality and interannual variability in a boreal forest"

description: The final dataset used in manuscript "Long-term fluxes of carbonyl sulfide and their seasonality and interannual variability in a boreal forest" by Vesala et al. (2022). The dataset contains carbonyl sulfide (COS) and carbon dioxide (CO2) eddy covariance flux data and in-situ meteorological data measured at Hyytiälä forest in Juupajoki, Southern Finland, as well as meteorological drivers for SiB4 simulations and SiB4 simulated COS flux at the Hyytiälä grid cell from January 2013 to December 2017. Raw data are available upon request from the author.
DOI: 10.6084/m9.figshare.17082569.v1
title: CYTB.fas

description: CYTB alignment
DOI: 10.6084/m9.figshare.17082569
title: CYTB.fas

description: CYTB alignment
DOI: 10.6084/m9.figshare.17082551
title: APOB.fas

description: APOB alignment
DOI: 10.6084/m9.figshare.17082551.v1
title: APOB.fas

description: APOB alignment
DOI: 10.25318/3310041701-eng
title: Expected impact of the absence of government support programs on the survival of business or organization, fourth quarter of 2021

description: Expected impact of the absence of government support programs on the survival of business or organization, by North American Industry Classification System (NAICS), business employment size, type of business, business activity and majority ownership, fourth quarter of 2021.
DOI: 10.6084/m9.figshare.19071161
title: Cpun OBPs DATA.xls

description: Four CpunOBPs' binding activities with two female sex pheromones of <i>C. punctiferalis</i> and 24 host plant volatiles.
DOI: 10.6084/m9.figshare.19071161.v1
title: Cpun OBPs DATA.xls

description: Four CpunOBPs' binding activities with two female sex pheromones of <i>C. punctiferalis</i> and 24 host plant volatiles.
DOI: 10.6073/pasta/0cd8caf2eb9959c98b335828628914fb
title: Biotic cover in crescentic gouges of New England 2021

description: In this study, I tested the hypothesis that crescentic gouges – conspicuous, crescent-shaped troughs on recently glaciated granite domes – are important microsites of alpine and subalpine biomat development and plant establishment, and thus can be used to augment montane ecosystem conservation and restoration efforts. To test my hypothesis, in September 2021, I quantified biotic percent cover in crescentic gouges and measured gouge proximity to upslope, established biomat and plant assemblages (i.e., presumed propagule sources), proximity to established hiking trails (i.e., distance from disturbance), and gouge sizes at four mid-elevation granite balds in NH, VT, and ME, USA. I used distance-based linear regression modeling (DISTLMv.5) to evaluate the effects of these predictor variables on biotic cover in the gouges. At all sites, all three predictor variables (proximity to upslope, well-developed assemblage, proximity to hiking trail, and gouge size) together explained a statistically significant proportion of the variation in total biotic cover in crescentic gouges. At one site (Speckled Mountain, ME), all three predictors explained 71% of the variation in biotic cover; the proportion of variance explained at other sites was lower but still statistically significant. When I evaluated the effects of predictor variables individually, each significantly affected biotic cover in crescentic gouges at all sites. My data suggest that crescentic gouges, particularly larger gouges not overlain by pine canopy, support strong biomat and plant colonization, and thus should be considered in alpine and subalpine plant conservation and restoration initiatives. Cordoning off crescentic gouges at mid-elevation sites would be a novel, inexpensive, and relatively straightforward way to augment existing alpine and subalpine conservation and restoration efforts.
DOI: 10.6084/m9.figshare.17082554.v1
title: vWF.fas

description: vWF alignment
DOI: 10.6084/m9.figshare.17082554
title: vWF.fas

description: vWF alignment
DOI: 10.6084/m9.figshare.17082563
title: ADRB2.fas

description: ADRB2 alignment
DOI: 10.6084/m9.figshare.17082563.v1
title: ADRB2.fas

description: ADRB2 alignment