cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15388013
title: Portable Optical Particle Sizer (POPS) measurements of aerosol particle number concentration and size distribution in summertime in Narsarsuaq and Narsaq, South Greenland during Greenfjord 2023

description: Abstract and dataset contents:

This dataset contains measurements of aerosol particle number size distributions and total number concentration between 186.6 and 3366 nm (optical diameter) expressed in dN/dlogDp (cm⁻³), averaged to a 10-second time resolution (native resolution: 1 second). Data were collected using a Portable Optical Particle Spectrometer (POPS; Handix Scientific, Boulder, USA). Measurements were conducted at three difference sites, two sites near Narsarsuaq and one in Narsaq, Greenland. The co-ordinates of the Narsarsuaq col and plain sites are 61.2061254 N, 45.3118504 W, 300 m above sea level , and 61.200028 N, 45.328000 W, 25 m above sea level. The Narsaq hill site was at 60.9210617 N, 46.0274668 W, 372 m above sea level. 

Metadata is provided for each site in files 'Metadata_POPS_coll.docx', 'Metadata_POPS_hill.docx' and 'Metadata_POPS_plain.docx'.  The bin diameters are provided in ‘POPS_bin_boundaries.csv’. Briefly, the dataset files (POPS_coll.csv, POPS_hill.csv and POPS_plain.csv) include:



Datetime

Normalised particle concentrations for each bin (dN/dlogDp)

Pollution flag to inform data user when short-lived spikes can be found in the data from local anthropogenic pollution

Total particle concentration between 186 and 3370 nm for all bins in particles cm-3


Funding acknowledgements:

This work was supported by funding from the Swiss National Science Foundation grant no. 200021_212101, the Swiss Polar Institute grant no. SPI-FLAG-2021-002 Greenfjord, and the ENAC Flagship 2022 ECO-Plains.
DOI: 10.5281/zenodo.14727261
title: A novel interface for rt-fMRI neurofeedback using music

description: A novel interface for rt-fMRI neurofeedback using music

This dataset was acquired with the goal of validating a musical interface for real-time fMRI neurofeedback that is adaptable to various experimental paradigms. Using a previously explored motor imagery connectivity-based framework, we evaluate its feasibility and efficacy by comparing the modulation of bilateral premotor cortex (PMC) activity during functional runs with real versus sham (random) feedback. The experiment involves a 60-minute MRI session, including anatomical scans, a PMC localizer run, and four functional runs (two with active feedback and two with sham feedback). Pre- and post-session questionnaires assess mood, musical background, and subjective feedback experiences. During functional runs, participants practice motor imagery of finger-tapping, with feedback delivered as a dynamic, pre-validated chord progression that evolves or regresses based on the correlation between left and right PMC activity.

fMRI dataset specifications:



BIDS

22 subjects

T1w, T2w, defaced using pydeface

GRE fieldmaps, one per subject

4 Neurofeedback runs, two active and two sham
DOI: 10.5281/zenodo.14923640
title: A novel interface for rt-fMRI neurofeedback using music

description: A novel interface for rt-fMRI neurofeedback using music

This dataset was acquired with the goal of validating a musical interface for real-time fMRI neurofeedback that is adaptable to various experimental paradigms. Using a previously explored motor imagery connectivity-based framework, we evaluate its feasibility and efficacy by comparing the modulation of bilateral premotor cortex (PMC) activity during functional runs with real versus sham (random) feedback. The experiment involves a 60-minute MRI session, including anatomical scans, a PMC localizer run, and four functional runs (two with active feedback and two with sham feedback). Pre- and post-session questionnaires assess mood, musical background, and subjective feedback experiences. During functional runs, participants practice motor imagery of finger-tapping, with feedback delivered as a dynamic, pre-validated chord progression that evolves or regresses based on the correlation between left and right PMC activity.

fMRI dataset specifications:



BIDS

22 subjects

T1w, T2w, defaced using pydeface

GRE fieldmaps, one per subject

4 Neurofeedback runs, two active and two sham


Study pre-registration: OSF Registries
DOI: 10.5281/zenodo.15206509
title: Empirical orthogonal functions (EOFs) and their principal components (PCs) of tides derived from the JAGUAR-DAS Whole neutral Atmosphere Reanalysis (JAWARA) during September 2004−December 2023

description: This dataset includes the seasonal cycles of the migrating diurnal tide (DW1), migrating semidiurnal tide (SW2), and eastward-propagating diurnal tide with zonal wavenumber 3 (DE3) at 80−110 km altitude in the mesosphere and lower thermosphere (MLT) region as derived from the tidal analysis of hourly JAWARA temperatures and horizontal wind velocities during September 2004−December 2023. The dataset also includes the first and second EOFs (EOF1 and EOF2) of DW1, the EOF1−EOF6 of SW2, and the EOF1−EOF4 of DE3, along with their corresponding daily PC scores. The data format is NetCDF.

The dataset is a supplement to:"Yamazaki, Y., Sato, K., Koshin, D., Liu, H., and Stolle, C. (2025) Empirical Orthogonal Function Analysis of Tidal Variability in the Mesosphere and Lower Thermosphere Based on the JAGUAR-DAS Whole neutral Atmosphere Reanalysis (JAWARA), submitted to Journal of Geophysical Research: Atmospheres."See the above paper for more details about the dataset.
DOI: 10.5281/zenodo.14803374
title: A novel interface for rt-fMRI neurofeedback using music

description: A novel interface for rt-fMRI neurofeedback using music

This dataset was acquired with the goal of validating a musical interface for real-time fMRI neurofeedback that is adaptable to various experimental paradigms. Using a previously explored motor imagery connectivity-based framework, we evaluate its feasibility and efficacy by comparing the modulation of bilateral premotor cortex (PMC) activity during functional runs with real versus sham (random) feedback. The experiment involves a 60-minute MRI session, including anatomical scans, a PMC localizer run, and four functional runs (two with active feedback and two with sham feedback). Pre- and post-session questionnaires assess mood, musical background, and subjective feedback experiences. During functional runs, participants practice motor imagery of finger-tapping, with feedback delivered as a dynamic, pre-validated chord progression that evolves or regresses based on the correlation between left and right PMC activity.

fMRI dataset specifications:



BIDS

22 subjects

T1w, T2w, defaced using pydeface

GRE fieldmaps, one per subject

4 Neurofeedback runs, two active and two sham


Study pre-registration: OSF Registries
DOI: 10.5281/zenodo.15386786
title: Cloud Condensation Nuclei measurements in summertime in Narsaq, South Greenland during Greenfjord 2023

description: Abstract and dataset contents:

This dataset contains CCN total concentration measurements averaged at 10-second resolution (from a native 1-second resolution) using a Droplet Measurement Technologies CCNC-100 instrument. Measurements were performed at the Narsaq International Research Station (NIRS) in southern Greenland (60.9158°N, 46.0533°W, 17 m above sea level), across a range of supersaturations: 0.1%, 0.15%, 0.2%, 0.5%, and 1% during the Greenfjord campaign in June-August 2023.

Full description of the dataset can be found in the metadata_CCN.doc file. Briefly, the dataset file (Lv2_CCN.csv) includes:



Datetime

Supersaturation measurements given by CCN counter (0.1,0.15,0.2,0.5,1%)

CCN number concentration per supersaturation

Interstitial inlet flag to inform data user when CCN counter was switched from total inlet to PM1 inlet

Pollution flag to inform data user when short-lived spikes can be found in the data from local anthropogenic pollution

Inlet relative humidity (RH) flag to inform the data user when the RH in the inlet system reached over 40 %


Funding acknowledgements:

This work was supported by funding from the Swiss National Science Foundation grant no. 200021_212101, the Swiss Polar Institute grant no. SPI-FLAG-2021-002 Greenfjord, and the ENAC Flagship 2022 ECO-Plains.
DOI: 10.5281/zenodo.15387340
title: Fidas measurements of total aerosol number concentration and number size distributions in summertime in Narsaq, South Greenland during Greenfjord 2023

description: Abstract and dataset contents:

This dataset provides aerosol particle number size distributions (dN/dlogDp) covering optical diameters from 0.191 to 93.057 μm, along with total aerosol number concentrations (cm⁻³), recorded at 30-second resolution. Measurements were conducted using an optical particle counter (Fidas Frog, Palas, Karlsruhe, Germany). Measurements were carried out at the Narsaq International Research Station (NIRS) in southern Greenland (60.9158°N, 46.0533°W, 17 m above sea level) during the Greenfjord campaign in June-August 2023.

Metadata is provided in the file ‘metadata_Fidas.doc’, the bin diameters are provided in ‘fidas_bin_boundaries.csv’. 

Briefly, the dataset named ‘fidas.csv’ includes:



Datetime

Normalsed number concentration per (dN/dlogDp)

Pollution flag to inform data user when short-lived spikes can be found in the data from local anthropogenic pollution

Inlet relative humidity (RH) flag to inform the data user when the RH in the inlet system reached over 40 %


Funding acknowledgements:

This work was supported by funding from the Swiss National Science Foundation grant no. 200021_212101, the Swiss Polar Institute grant no. SPI-FLAG-2021-002 Greenfjord, and the ENAC Flagship 2022 ECO-Plains.
DOI: 10.5281/zenodo.14065209
title: D4.1 Review on Accuracy of Proximal Soil Sensors Dataset

description: Dataset on accuracies of the working review paper on costs and accuracies associated with using proximal soil sensing for high-resolution soil mapping. The RMSE data and related information were extracted from around 200 articles (references are included). This dataset is associated with the following DOI: https://doi.org/10.5281/zenodo.14035520
DOI: 10.5281/zenodo.15046162
title: Dataset for leaf, flower and fruit phenology patterns and environmental relationships in a seasonal tropical forest in the Indian Eastern Himalaya with R codes for analyses

description: The dataset contains monthly tree phenology data for 54 tree species from a tropical forest site from Jan 2011 to February 2023 - on leafing, flowering and fruiting patterns. It also contains data on weather variables from a weather station - temperarture, solar irradiance (radiation) and rainfall. The R codes for line plots, fourier analysis and GAMLSS. 

This dataset is analysed for a paper in Biotropica (in press).

Title of paper: Patterns of leaf, flower and fruit phenology and environmental relationships in a seasonal tropical forest in the Indian Eastern Himalaya

Authors: Aparajita Datta, Soumya Banerjee, Rohit Naniwadekar, Khem Thapa, Akanksha Rathore, Kumar Thapa, Turuk Brah, Tali Nabum, Narayan Mogar, Ushma Shukla, Swati Sidhu, and Noopur Borawake
DOI: 10.5281/zenodo.14017679
title: SERENA EJPSOIL PL GHG NEP

description: General description of SERENA

The internal EJP SOIL project SERENA contributed to the evaluation of soil multifunctionality aiming at providing assessment tools for land planning and soil policies at different scales. By co-working with relevant stakeholders, the project provided co-developed indicators and associated cookbooks to assess and map them, to report both on soil degradation, soil-based ecosystem services and their bundles, under actual conditions and for climate and land-use changes, at the regional, national, and European scales.

Files description

Data was prepared as a result of SERENA EJP SOIL. The attached files are a part of the analysis of Assessment of Soil Threats and Ecosystem Services from each MS with the harmonized procedures. SERENA deliverable 3.3 (https://doi.org/10.5281/zenodo.13991087). 

The present dataset corresponds to a map of Net Ecosystem Productivity (NEP) for Poland (agricultural areass) as wheat by the Eurocrop 2028 spatial product (d’Andrimont et al. 2021). The map is the result of applying the NEP cookbook developed in SERENA/EJP-Soil to the area of interest (AOI) input data. NEP is expressed for a single 8-day period in early summer as it is the date with the highest value. The NEP value is a 2014 average for the particular 8-day period. NEP was used as an indicator of greenhouse gasses and climate regulation supported by soils. 
description: The data are derived from the calculation of indicators based on a standard methodology established as part of the EJP Soil SERENA programme. Please keep in mind that:






It is the result of a modelling exercise and does not necessarily reflect reality.




Despite the efforts made to provide reliable data, the results may contain inconsistencies, depending in particular on the raw data available and level of accuracy of the techniques chosen and their prior knowledge .




It is necessary to consider how the results have been obtained in order to decide on their relevance in relation to the intended purpose of reuse.




These results are interesting from a scientific point of view, but their use for environmental management and policy issues should be done keeping the previous aspects in mind and complementing when necessary the provided results with the best available data.





==> Finally, it is the responsibility of the users of this information to decide whether it is appropriate to use these data and whether the data meet their needs. The authors of this resource can in no way be held responsible for the results obtained from the use of this data.
DOI: 10.5281/zenodo.13736222
title: Spatial Transcriptomics data - A new spatial multi-omics approach to deeply characterize human cancer tissue using a single slide

description: Spatial Transcriptomics data (Visium SD assays) generated for the manuscript "A new spatial multi-omics approach to deeply characterize human cancer tissue using a single slide" by Adimi et al. (2024)
DOI: 10.5281/zenodo.15387546
title: Equivalent Black Carbon (eBC) mass concentrations in summertime in Narsaq, South Greenland during Greenfjord 2023

description: Abstract and dataset contents:

This dataset contains measurements of equivalent black carbon (eBC) mass concentrations obtained using a portable micro-aethalometer (mAeth, MA200, Aethlabs). The instrument measures light attenuation by aerosols deposited on a PTFE filter band at five wavelengths: 375, 470, 528, 625, and 880 nm. Measurements were carried out at the Narsaq International Research Station (NIRS) in southern Greenland (60.9158°N, 46.0533°W, 17 m above sea level) during the Greenfjord campaign in June-August 2023.

Metadata is provided in file 'metadata_mAeth.docx'. Briefly, the dataset files (Lv2_mAeth.csv) include:



Datetime

Equivalent black carbon aerosol mass in ng m-3 at 375, 470, 528, 625 and 880 nm

Calculated absorption coefficients for 375, 470, 528, 625 and 880 nm

Pollution flag to inform data user when short-lived spikes can be found in the data from local anthropogenic pollution

Inlet relative humidity (RH) flag to inform the data user when the RH in the inlet system reached over 40 %


Funding acknowledgements:

This work was supported by funding from the Swiss National Science Foundation grant no. 200021_212101, the Swiss Polar Institute grant no. SPI-FLAG-2021-002 Greenfjord, and the ENAC Flagship 2022 ECO-Plains.
DOI: 10.5281/zenodo.14990821
title: Supplementary Data: Identification of hematopoietic cell state markers in acute leukemia using explainable machine learning

description: Supplementary Data for "Identification of hematopoietic cell state markers in acute leukemia using explainable machine learning" 

File Description



IsoMarker Output.zip: Output of IsoMarker applied to integrated AML pseudo-bulk RNA-seq atlas.

aml_raw_expression.csv.zip: Raw expression counts of AML pseudo-bulk RNA-seq atlas, stratified by donor and cell state.

aml_raw_expression.csv.zip: VST-normalized expression counts of AML pseudo-bulk RNA-seq atlas, stratified by donor and cell state.

aml_atlas_metadata.csv.zip: Metadata of AML pseudo-bulk RNA-seq atlas.
DOI: 10.5281/zenodo.15386988
title: Scanning Electrical Mobility Spectrometer (SEMS) measurements of aerosol particle number concentration and size distribution in summertime in Narsaq, South Greenland during Greenfjord 2023

description: Abstract and dataset contents:

This dataset contains measurements of aerosol particle number concentrations (cm⁻³) and size distributions (dN/dlogDp) spanning 8 to 1000 nm, obtained using a Scanning Electrical Mobility Spectrometer (SEMS, Brechtel Manufacturing Inc., USA). Measurements were carried out at the Narsaq International Research Station (NIRS) in southern Greenland (60.9158°N, 46.0533°W, 17 m above sea level) during the Greenfjord campaign in June-August 2023.

Full description of the dataset can be found in the metadata_SEMS.doc file. 

Briefly, the dataset files (Lv2_SEMS.csv; SEMS_bin_diameters.csv) include:



Datetime

Normalsed number concentration per (dN/dlogDp)

SEMS total number concentration

Interstitial inlet flag to inform data user when CCN counter was switched from total inlet to PM1 inlet

Pollution flag to inform data user when short-lived spikes can be found in the data from local anthropogenic pollution

Inlet relative humidity (RH) flag to inform the data user when the RH in the inlet system reached over 40 %

Bin diameters


Funding acknowledgements:

This work was supported by funding from the Swiss National Science Foundation grant no. 200021_212101, the Swiss Polar Institute grant no. SPI-FLAG-2021-002 Greenfjord, and the ENAC Flagship 2022 ECO-Plains.
DOI: 10.5281/zenodo.15727335
title: Datasets for two soft lepton and monojet excess papers

description: Results and input files for two papers:

 

Monojets from compressed weak frustrated dark matterPublished in:  Phys.Rev.D 111 (2025) 5, 055010, arXiv: 2409.03014By Benjamin Fuks, Mark Goodsell and Taylor Murphy

 

and

A joint explanation for the soft lepton and monojet LHC excesses in the wino-bino modelBy Diyar Agin, Benjamin Fuks, Mark Goodsell and Taylor Murphy
DOI: 10.5281/zenodo.15387919
title: Single-Channel Tricolour Absorption Photometer (STAP) measurements of aerosol absorption coefficients in summertime in Narsaq, South Greenland during Greenfjord 2023

description: Abstract and dataset contents:

This dataset contains measurements of aerosol absorption coefficients at 450, 525 and 624 nm using a Single-channel Tricolour Absorption Photometer (STAP, Brechtel Manufacturing Inc. USA), which measures the attenuation of light through a sample filter at multiple wavelengths and compares this to a reference filter. Measurements were conducted at Narsaq International Research Station (NIRS), centrally located in Narsaq, Southern Greenland (lat: 60.9157503°, lon: -46.0533263°, alt: 17 m above sea level), during the Greenfjord campaign in June-August 2023.

Metadata can be found in the file 'metadata_STAP.docx'. Briefly, the dataset files (Lv2_STAP.csv) include:



Datetime

Absorption coefficients at 450, 525 and 624 nm (M m-1)

Pollution flag to inform data user when short-lived spikes can be found in the data from local anthropogenic pollution

Inlet relative humidity (RH) flag to inform the data user when the RH in the inlet system reached over 40 %

Filter usage flag to inform data user of the sample filter usage per wavelength due to different responses to filter loading at each wavelength

Grounding flag to inform user when the instrument was not electrically grounded and therefore a larger signal-to-noise ratio is expected


Funding acknowledgements:

This work was supported by funding from the Swiss National Science Foundation grant no. 200021_212101, the Swiss Polar Institute grant no. SPI-FLAG-2021-002 Greenfjord, and the ENAC Flagship 2022 ECO-Plains.
DOI: 10.5281/zenodo.13372811
title: CHROMA project data
DOI: 10.5281/zenodo.14018112
title: SERENA EJPSOIL PL EROSION CONTROL SOIL MASS NOT ERODED

description: General description of SERENA

The internal EJP SOIL project SERENA contributed to the evaluation of soil multifunctionality aiming at providing assessment tools for land planning and soil policies at different scales. By co-working with relevant stakeholders, the project provided co-developed indicators and associated cookbooks to assess and map them, to report both on soil degradation, soil-based ecosystem services and their bundles, under actual conditions and for climate and land-use changes, at the regional, national, and European scales.

Files description

Data was prepared as a result of SERENA EJP SOIL. The attached files are a part of the analysis of Assessment of Soil Threats and Ecosystem Services from each MS with the harmonized procedures. SERENA deliverable 3.3 (https://doi.org/10.5281/zenodo.13991087). The RUSLE method was used to prepare the attached files. 
description: The data are derived from the calculation of indicators based on a standard methodology established as part of the EJP Soil SERENA programme. Please keep in mind that:






It is the result of a modelling exercise and does not necessarily reflect reality.




Despite the efforts made to provide reliable data, the results may contain inconsistencies, depending in particular on the raw data available and level of accuracy of the techniques chosen and their prior knowledge .




It is necessary to consider how the results have been obtained in order to decide on their relevance in relation to the intended purpose of reuse.




These results are interesting from a scientific point of view, but their use for environmental management and policy issues should be done keeping the previous aspects in mind and complementing when necessary the provided results with the best available data.





==> Finally, it is the responsibility of the users of this information to decide whether it is appropriate to use these data and whether the data meet their needs. The authors of this resource can in no way be held responsible for the results obtained from the use of this data.
DOI: 10.5281/zenodo.14046624
title: Metabarcoding shows that the invasive shrimp Macrobrachium rosenbergii (De Man, 1879) in the Amazon River delta is an opportunistic and generalist predator
DOI: 10.5281/zenodo.14675149
title: Macrobrachium rosenbergii as an opportunistic, generalist predator in the Amazon Delta: insights from Metabarcoding

description: Invasive species alter habitats and biological communities. The giant river prawn Macrobrachium rosenbergii (de Man 1879) was introduced to Brazil for aquaculture, andinvasive populations have established in the Amazon delta region where they are believed to pose a risk to the native aquatic fauna. To assess potential impacts, we performed dietary metabarcoding using generalist COI primers on 105 stomach contents collected from prawns from the southern Amazon delta. Overall, M. rosenbergii presents an opportunistic and generalist diet that reflects the dominant aquatic and terrestrial fauna of the region including the orders Characiformes, Diptera and Lepidoptera as dominant dietary items both in terms of frequency of occurrence and richness. One unidentified congeneric species was identified in the diet, indicating the potential for negative effects on the native prawn fauna. Additionally, while there is a general overlap in the diet for all categories of sex and reproductive phase, smaller immature individuals and molted females showed reduced diversity in their diet suggesting limitations in prey handling or access. We conclude that dietary metabarcoding of opportunistic generalists and/or detritivores appears to be an efficient tool for monitoring biodiversity as well as understanding their role in the food web.