cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.q6fa6s
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (199474029, 204357672, Caesionidae, Caesionidae, Caesionidae, Caesionidae, 197287579, Caesionidae, Caesionidae, 203894755, Caesionidae, Caesionidae, Caesionidae , 208643706, Caesionidae, Caesionidae, Caesionidae, Caesionidae, Caesionidae, Caesionidae, Caesionidae, Caesionidae, Caesionidae, Caesionidae, Caesionidae, Caesionidae, Caesionidae, Caesionidae, 158167070, Caesionidae, 161453140, Caesionidae Bonaparte, 1831, Caesionidae Bonaparte, 1831, Caesionidae Bonaparte 1831, Caesionidae Bonaparte, 1831, Lutjanidae T.N.Gill, 1861, Lutjanidae Gill, 1861)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((105.5 17,110.5 17,110.5 22,105.5 22,105.5 17))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 25 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0245195-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rfa4r7
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-76.80468 2.57876,-70.37702 7.87479,-75.76358 11.54127,-79.20374 4.38937,-76.80468 2.57876))",
 "TaxonKey is one of (Cyclopes dorsalis (Gray, 1865), Cyclopes didactylus (Linnaeus, 1758))"
 ]
}

 The dataset includes 62 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0228461-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yt43ub
title: Occurrence Download

description: A dataset listing the 3141 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-102.79832 21.35568,-103.01865 21.14691,-103.00763 20.88639,-102.82402 20.70445,-102.43845 20.62542,-102.16671 20.64261,-102.08592 20.89325,-102.12632 21.09553,-102.18874 21.31805,-102.36501 21.40355,-102.70651 21.39329,-102.79832 21.35568))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 3141 records were derived from 195 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0258760-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s5dcjv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oreochromis niloticus",
 "Country is Pakistan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056104-250717081556266/datasets/export for details.
DOI: 10.15468/dl.v6v8wt
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oreochromis niloticus",
 "Country is Peru",
 "HasCoordinate is true"
 ]
}

 The dataset includes 16 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056105-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.paxh6h
title: Occurrence Download

description: A dataset containing 1312 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prunus persica",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1312 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056106-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rwy6y2
title: Occurrence Download

description: A dataset containing 52916 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gelochelidon macrotarsa)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 52916 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056082-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a4f93d
title: Occurrence Download

description: A dataset containing 184 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oreochromis niloticus",
 "Country is Philippines",
 "HasCoordinate is true"
 ]
}

 The dataset includes 184 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056108-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6xgpgr
title: Occurrence Download

description: A dataset containing 348269 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Reef Life Survey: Global reef fish dataset"
 ]
}

 The dataset includes 348269 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056098-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wc8fzn
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Furcraea foetida",
 "Country is Zambia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056107-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h924rd
title: Occurrence Download

description: A dataset containing 176 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prunus persica",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 176 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056110-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6mmer7
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Russian Federation",
 "Geometry POLYGON((102.80972 49.82999,110.81956 49.82999,110.81956 55.99219,102.80972 55.99219,102.80972 49.82999))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Berberidaceae"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056111-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nj68y2
title: Occurrence Download

description: A dataset containing 1089405 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gavia stellata)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 1089405 records from 420 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056081-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vevaqs
title: Occurrence Download

description: A dataset containing 67625 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neogobius melanostomus"
 ]
}

 The dataset includes 67625 records from 163 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056035-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mq76hf
title: Occurrence Download

description: A dataset containing 669 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oreochromis niloticus",
 "Country is Tanzania, United Republic of",
 "HasCoordinate is true"
 ]
}

 The dataset includes 669 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056113-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x4srmu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brachiaria distachya",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056112-250717081556266/datasets/export for details.
DOI: 10.15468/dl.g7ccxu
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prunus persica",
 "Country is Bolivia (Plurinational State of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 29 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056115-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wj6q2w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prunus persica",
 "Country is Bosnia and Herzegovina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056117-250717081556266/datasets/export for details.
DOI: 10.15468/dl.w7xbp9
title: Occurrence Download

description: A dataset containing 24786 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Nijmegen Natural History Museum (NL) - Entomological Collection"
 ]
}

 The dataset includes 24786 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056116-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.un4rtj
title: Occurrence Download

description: A dataset containing 226 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sansevieria trifasciata",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 226 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056118-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zw4v7z
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brachiaria distachya",
 "Country is Cuba",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056119-250717081556266/datasets/export for details.
DOI: 10.15468/dl.jxem2b
title: Occurrence Download

description: A dataset containing 2087 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Geokichla guttata)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 2087 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056120-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jpur37
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brachiaria distachya",
 "Country is Fiji",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056122-250717081556266/datasets/export for details.
DOI: 10.15468/dl.g29fcv
title: Occurrence Download

description: A dataset containing 602 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nettastoma melanurum"
 ]
}

 The dataset includes 602 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056121-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16494033
title: MD simulation of DPPC monolayer (Slipids, OPC3) 43-78A2

description: About these systems:

This record contains the simulation files of 50-lipid DPPC monolayers simulated in the water-air interface with (~85 water per lipid). 

 

The initial structure of the systems was assembled by disjoining of monolayers in published GRO-file taken from Slipids website; obtained monolayer system was then equilibrated with GROMACS by following their recommended protocol. The membrane was then compressed and expanded in a simulation using PLUMED, from which states at different values of area per lipid were extracted.

Each of these systems was the initial state of a 100 ns long simulation in the NVT ensemble (T=298.15 K), the ones here provided.

For all simulations, Slipids parameters (from 2020 year) for the lipids and the 3-point OPC3 water model were used.

Files provided:



Compressed file with all ITP files with the parameters used for the simulations. TOP for entire system topology

MDP file used for the production simulations. 

For each simulation, TPR of the simulation, trajectory in TRR format, EDR file, and GRO file representing the final state of the system. All files corresponding to the same simulation are labeled as NVTXX, where XX is the nominal APL at which the simulations were carried out (APL = 43-80 Å2).
DOI: 10.15468/dl.45a97q
title: Occurrence Download

description: A dataset containing 279 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oreochromis niloticus",
 "Country is Thailand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 279 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056123-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16494032
title: MD simulation of DPPC monolayer (Slipids, OPC3) 43-78A2

description: About these systems:

This record contains the simulation files of 50-lipid DPPC monolayers simulated in the water-air interface with (~85 water per lipid). 

 

The initial structure of the systems was assembled by disjoining of monolayers in published GRO-file taken from Slipids website; obtained monolayer system was then equilibrated with GROMACS by following their recommended protocol. The membrane was then compressed and expanded in a simulation using PLUMED, from which states at different values of area per lipid were extracted.

Each of these systems was the initial state of a 100 ns long simulation in the NVT ensemble (T=298.15 K), the ones here provided.

For all simulations, Slipids parameters (from 2020 year) for the lipids and the 3-point OPC3 water model were used.

Files provided:



Compressed file with all ITP files with the parameters used for the simulations. TOP for entire system topology

MDP file used for the production simulations. 

For each simulation, TPR of the simulation, trajectory in TRR format, EDR file, and GRO file representing the final state of the system. All files corresponding to the same simulation are labeled as NVTXX, where XX is the nominal APL at which the simulations were carried out (APL = 43-80 Å2).
DOI: 10.5281/zenodo.16461350
title: MD simulation of DPPC monolayer (Slipids, SPC) 43-78A2

description: About these systems:

This record contains the simulation files of 50-lipid DPPC monolayers simulated in the water-air interface with (~85 water per lipid). 

 

The initial structure of the systems was assembled by disjoining of monolayers in published GRO-file taken from Slipids website; obtained monolayer system was then equilibrated with GROMACS by following their recommended protocol. The membrane was then compressed and expanded in a simulation using PLUMED, from which states at different values of area per lipid were extracted.

Each of these systems was the initial state of a 100 ns long simulation in the NVT ensemble (T=298.15 K), the ones here provided.

For all simulations, Slipids parameters (from 2020 year) for the lipids and the 3-point SPC water model were used.

Files provided:



Compressed file with all ITP files with the parameters used for the simulations. TOP for entire system topology

MDP file used for the production simulations. 

For each simulation, TPR of the simulation, trajectory in TRR format, EDR file, and GRO file representing the final state of the system. All files corresponding to the same simulation are labeled as NVTXX, where XX is the nominal APL at which the simulations were carried out (APL = 43-80 Å2).
DOI: 10.5281/zenodo.16461351
title: MD simulation of DPPC monolayer (Slipids, SPC) 43-78A2

description: About these systems:

This record contains the simulation files of 50-lipid DPPC monolayers simulated in the water-air interface with (~85 water per lipid). 

 

The initial structure of the systems was assembled by disjoining of monolayers in published GRO-file taken from Slipids website; obtained monolayer system was then equilibrated with GROMACS by following their recommended protocol. The membrane was then compressed and expanded in a simulation using PLUMED, from which states at different values of area per lipid were extracted.

Each of these systems was the initial state of a 100 ns long simulation in the NVT ensemble (T=298.15 K), the ones here provided.

For all simulations, Slipids parameters (from 2020 year) for the lipids and the 3-point SPC water model were used.

Files provided:



Compressed file with all ITP files with the parameters used for the simulations. TOP for entire system topology

MDP file used for the production simulations. 

For each simulation, TPR of the simulation, trajectory in TRR format, EDR file, and GRO file representing the final state of the system. All files corresponding to the same simulation are labeled as NVTXX, where XX is the nominal APL at which the simulations were carried out (APL = 43-80 Å2).
DOI: 10.5281/zenodo.16465408
title: MD simulation of DPPC monolayer (Slipids, TIP3) 43-78A2

description: About these systems:

This record contains the simulation files of 50-lipid DPPC monolayers simulated in the water-air interface with (~85 water per lipid). 

 

The initial structure of the systems was assembled by disjoining of monolayers in published GRO-file taken from Slipids website; obtained monolayer system was then equilibrated with GROMACS by following their recommended protocol. The membrane was then compressed and expanded in a simulation using PLUMED, from which states at different values of area per lipid were extracted.

Each of these systems was the initial state of a 100 ns long simulation in the NVT ensemble (T=298.15 K), the ones here provided.

For all simulations, Slipids parameters (from 2020 year) for the lipids and the 3-point TIP3P water model were used.

Files provided:



Compressed file with all ITP files with the parameters used for the simulations. TOP for entire system topology

MDP file used for the production simulations. 

For each simulation, TPR of the simulation, trajectory in TRR format, EDR file, and GRO file representing the final state of the system. All files corresponding to the same simulation are labeled as NVTXX, where XX is the nominal APL at which the simulations were carried out (APL = 43-80 Å2).
DOI: 10.5281/zenodo.16465409
title: MD simulation of DPPC monolayer (Slipids, TIP3) 43-78A2

description: About these systems:

This record contains the simulation files of 50-lipid DPPC monolayers simulated in the water-air interface with (~85 water per lipid). 

 

The initial structure of the systems was assembled by disjoining of monolayers in published GRO-file taken from Slipids website; obtained monolayer system was then equilibrated with GROMACS by following their recommended protocol. The membrane was then compressed and expanded in a simulation using PLUMED, from which states at different values of area per lipid were extracted.

Each of these systems was the initial state of a 100 ns long simulation in the NVT ensemble (T=298.15 K), the ones here provided.

For all simulations, Slipids parameters (from 2020 year) for the lipids and the 3-point TIP3P water model were used.

Files provided:



Compressed file with all ITP files with the parameters used for the simulations. TOP for entire system topology

MDP file used for the production simulations. 

For each simulation, TPR of the simulation, trajectory in TRR format, EDR file, and GRO file representing the final state of the system. All files corresponding to the same simulation are labeled as NVTXX, where XX is the nominal APL at which the simulations were carried out (APL = 43-80 Å2).
DOI: 10.15468/dl.qhj6hc
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prunus persica",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 88 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056124-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dubwe5
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prunus persica",
 "Country is Croatia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 17 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056126-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3fvk2g
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prunus persica",
 "Country is Comoros",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056125-250717081556266/datasets/export for details.
DOI: 10.15468/dl.znfyg9
title: Occurrence Download

description: A dataset containing 3686 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Geokichla sibirica)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 3686 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056127-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.