cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.8b1d6pf/1
title: Pale_by_comparison_2018

description: This file package includes five (5) .csv files from which the analyses and figures in the article can be repeated. Competition_experiment.csv file and Mate_choice_experiment.csv file consist of data collected in laboratory. Distance_in_nature.csv, Field_experiment.csv and Competition_experiment_supplementary_material_settled_females.csv consist of data collected in field. There are explanations for the data in each column in column names.
DOI: 10.5061/dryad.8n3d110/1
title: Wagon Wheel Data

description: Data belonging to the field experiment with wagon wheel set up. Parasitism rates of recollected Pieris brassicae caterpillars from fields after release of Cotesia glomerata parasitoids. See read me file for explanation of the columns.
DOI: 10.5061/dryad.8n3d110/2
title: Wagon Wheel Data Background Check

description: Data belonging to the field experiment with wagon wheel set up. Data on parasitism rates of caterpillars recollected before releasing Cotesia glomerata parasitoids, indicated whether any background parasitism occured. See readme file for more information.
DOI: 10.5061/dryad.8n3d110/3
title: Tent Experiment Data

description: Data on Cotesia glomerata foraging behaviour in semifield conditions (tent experiment). See readme for details on columns.
DOI: 10.5061/dryad.8s75sg6/2
title: gs15_139b_Accel_Depth_5Hz

description: Movement data for grey seal gs15_139b for the entire recording period.
DOI: 10.5061/dryad.8s75sg6/3
title: hs16_265c_TOLs

description: TOL levels for the entire recording period for harbour seal hs16_265c. Data is in a by-day structure in 30 sec averages.
DOI: 10.5061/dryad.8s75sg6/4
title: hs16_265c_track

description: Track file for harbour seal hs16_265c
DOI: 10.5061/dryad.8s75sg6/5
title: Resting_video_acceleration_data

description: Acceleration data associated with resting dive from example in manuscript and supplementary material
DOI: 10.5061/dryad.bg08269/1
title: Northeast US Continental Shelf Bottom Trawl Data 1963-2015

description: Data from the US National Marine Fisheries Service's biannual (spring and fall) stratified random bottom trawl survey, from 1963-2015. Data has been cleaned using the trawlData package (ver. 0.4.0) in R (for details on the cleaning process, see https://github.com/rBatt/trawlData/). 
From this dataset, columns used for Flanagan et al. (2018) include: stratum (Numbered survey strata defined by the Northeast Fisheries Science Center), year, season, lat, lon, depth, bottom temperature [btemp], corrected weight of catch per unit effort [wtcpue] and species [spp]. See README for more details on this and related files.
DOI: 10.5061/dryad.bg08269/2
title: US continental shelf benthic marine species' modeled thermal preferences

description: Modeled thermal preferences for species found in the US National Marine Fisheries Service biannual (spring and fall) bottom trawl surveys. Modeled preferences were generated using survey data from the North American continental shelf from the Gulf of Mexico to Newfoundland. Models included all spring and fall surveys from 1963-2015, excluding trawls from the Northeast US (North Carolina to Maine) from 1990-2015. See README for details on column headings.
DOI: 10.5061/dryad.bg08269/3
title: Scientific-and-common-names-of-trawl-species

description: Scientific names, common names, and species ID codes from the Northeast Fisheries Science Center's biannual bottom trawl survey, provided by M. Fogarty and S. Lucey. See README for details on related files.
DOI: 10.5061/dryad.cp4008d/1
title: Open Data for RSOS-180762

description: The data file includes discharge-charge profiles of Li4Ti5O12 electrodes coated with ZnO thin films at different current density and the fitted data of Electrochemical impedance spectroscopy plots.
DOI: 10.5061/dryad.g83f29f/1
title: Batch fermenter data for three human gut bacterial strains grown in mono- and co-culture

description: This collection of files contains data acquired for mono-, bi- and tri-cultures carried out for Faecalibacterium prausnitzii DSM 17677 (FP), Roseburia intestinalis DSM 14610 (RI) and Blautia hydrogenotrophica DSM 10507 (BH).

Fermentation experiments were carried out in 2-L Biostat B-DCU fermentors in batch mode. Anaerobic conditions during fermentations were assured by continuously sparging the medium with N2 at a flow rate of 70 mL min−1. The fermentation temperature was kept constant at 37 °C. A constant pH of 6.8 was imposed and controlled automatically, using 1.5 M solutions of NaOH and H3PO4. To keep the medium homogeneous, a gentle stirring of 200 rpm was applied.
DOI: 10.5061/dryad.g83f29f/2
title: Screening data for Blautia hydrogenotrophica

description: This collection of files contains data acquired for mono-cultures of Blautia hydrogenotrophica DSM 10507 (BH) without pH control. 

Experiments were performed in stationary glass bottles. The bottles contained 50 mL of heat-sterilized pH 6.8 mMCB medium. All bottles were incubated at 37°C in an anaerobic work station that was continuously sparged with a mixture of 80% N2, 10% CO2 and 10% H2. 

The consumption of the following substrates was tested at least in duplicate in two screening rounds:
D-Fructose
D-Glucose
D-Galactose
L-Fucose
Sodium formate
Sodium acetate trihydrate
Lactate
Oligofructose
Inulin

BH was also grown without substrate, to test autotrophic growth on CO2 in the headspace.

In addition, the GC-FID results (ethanol, acetoin, acetic acid, propionic acid, butyric acid, isobutyric acid and isovaleric acid) for BH grown on formate are included.
DOI: 10.5061/dryad.h2f3t2n/1
title: Arthropod_data

description: Seasonal presence absence data of each studied taxon (Family level, Crustacea, Coleoptera and Araneae)
DOI: 10.5061/dryad.h2f3t2n/2
title: Climate and local variable used
DOI: 10.5061/dryad.h38853n/1
title: Y chromosome sequences of 20 Native Americans

description: Tarball with 20 Native American cram files.
DOI: 10.5061/dryad.ht348n1/1
title: CO2 fluxes and biomass during experimental herbivore exclusion and shrub introduction

description: Field data of CO2 fluxes (including Net Ecosystem Exchange, Ecosystem Respiration and Gross Ecosystem Photosynthesis) and the environment (such as light, moisture, and air, surface, and soil temperature) during measurements and vegetation data (including absolute abundance and measured and estimated biomass of functional groups). Methods and experimental design is explained in publication. The data is processed in R core Team 2017.
DOI: 10.5061/dryad.j5j730p/1
title: Species presence on islands

description: Data on incidence of plant and animal species on East Frisian Islands. Original source: R. Niedringhaus et al. (2008) Flora und Fauna der Ostfriesischen Inseln. Schriftenreihe Nationalparkverwaltung Niedersächsisches Wattenmeer,
Band 11: 1-470
DOI: 10.5061/dryad.j5j730p/2
title: Characteristics of the islands

description: island: name of island; shanhab: Shannon index of habitats;	age: age in years;	choros: Choros index of habitat diversity;	increase: island growth, the slope of area over time (1650-2008);	cv: coefficient of variation in island size (1650-2008); nhabitat: number of habitat types per island (2008); area: island size in square kilometers (2008); erosion: maximal amount of erosion in square kilometers since 1650; sedimentation: maximal amount of sedimentation since 1650 in square kilometers; delta: sedimentation minus erosion
DOI: 10.5061/dryad.k388cn8/1
title: Dryad data for Ansari et al. MPE 2019

description: Population data from ANM nuclear loci
DOI: 10.5061/dryad.kg0mr83/1
title: Mikula_et_al_SongComplexity
DOI: 10.5061/dryad.kv27n5g/4
title: Grey Cloud herbivory data

description: Herbivory data collected in 2015 for Chamaecrista fasciculata at Grey Cloud. Column names are defined in README file for "GC_2015_census_data_revised.csv," except for "herbivory" column, which denotes the presence (1) or absence (0) of herbivory during any census, and "herbiv.certainty" column, which denotes any instances where the presence of herbivory was uncertain.
DOI: 10.5061/dryad.n89d4gg/1
title: Jackson et al_Multiple habitat use by declining migratory birds necessitates joined-up conservation

description: Field data comprising shorebird counts and biophysical survey variables, used in generalised linear mixed-effects models described in the manuscript. Survey month: 1 = July or August, 2 = September, 3 = October; Tide Height: tide height in cm at the highest or lowest tide point during the survey; Intertidal flats cover: 1 = seawater was against the seawall during the count, 0 = seawater did not reach the seawall during the count; Water cover: % cover of water over the surface area of the whole pond; Distance: distance to seawall measured in kilometres using Google Earth; Vegetation cover: estimated non-water surface area covered by vegetation, measured as &lt;10%, 10-30%, 30-50%, 50-70% or &gt;70%; Bund: number of unvegetated bunds (i.e. the bank surrounding the pond, sometimes called berms) for each pond, 1= at least one unvegetated bund, 0 = no unvegetated bunds; Structures: number of structures (telephone/electricity poles/wires, buildings and trees) within 10m of the perimeter of the pond; Size: pond size measured in hectares using Google Earth; Total Count: count of total shorebird abundance (all individuals of all species).
DOI: 10.5061/dryad.p1qq2r1/1
title: original data of CRVO with ME

description: the original data of this network meta-analysis
DOI: 10.5061/dryad.p1qq2r1/2
title: Specific literatures of included and excluded studies
DOI: 10.5061/dryad.p1qq2r1/3
title: Characteristics of included studies
DOI: 10.5061/dryad.pj5952j/1
title: SAM/PK/1314 right endosseous labyrinth

description: Surface file of the right labyrinth from SAM/PK/1314
DOI: 10.5061/dryad.pj5952j/2
title: BP/1/4779 left endosseous labyrinth

description: Surface file of the left labyrinth from BP/1/4779
DOI: 10.5061/dryad.pj5952j/3
title: BP/1/4930 left endosseous labyrinth

description: Surface file of the left labyrinth from BP/1/4930
DOI: 10.5061/dryad.pj5952j/4
title: BP/1/4934 left endosseous labyrinth

description: Surface file of the left labyrinth from BP/1/4934
DOI: 10.5061/dryad.pj5952j/5
title: BP/1/4998 left endosseous labyrinth

description: Surface file of the left labyrinth from BP/1/4998
DOI: 10.5061/dryad.pj5952j/6
title: BP/1/5231 left endosseous labyrinth

description: Surface file of the left labyrinth from BP/1/5231
DOI: 10.5061/dryad.q6q1726/10
title: Raw sequences (reverse reads) third part

description: Third part of the bzip-compressed fastq-file containing raw sequences (reverse reads) from Illumina HiSeq of pooled fungal DNA. Split with HJSplit as recommended by Dryad (http://wiki.datadryad.org/Large_File_Transfer).
DOI: 10.5061/dryad.q6q1726/11
title: Raw sequences (reverse reads) fourth part

description: Fourth part of the bzip-compressed fastq-file containing raw sequences (reverse reads) from Illumina HiSeq of pooled fungal DNA. Split with HJSplit as recommended by Dryad (http://wiki.datadryad.org/Large_File_Transfer).
DOI: 10.5061/dryad.q6q1726/7
title: Raw sequences (forward reads) third part

description: Third part of the bzip-compressed fastq-file containing raw sequences (forward reads) from Illumina HiSeq of pooled fungal DNA. Split with HJSplit as recommended by Dryad (http://wiki.datadryad.org/Large_File_Transfer).
DOI: 10.5061/dryad.q6q1726/8
title: Raw sequences (reverse reads) first part

description: First part of the bzip-compressed fastq-file containing raw sequences (reverse reads) from Illumina HiSeq of pooled fungal DNA. Split with HJSplit as recommended by Dryad (http://wiki.datadryad.org/Large_File_Transfer).
DOI: 10.5061/dryad.q6q1726/9
title: Raw sequences (reverse reads) second part

description: Second part of the bzip-compressed fastq-file containing raw sequences (reverse reads) from Illumina HiSeq of pooled fungal DNA. Split with HJSplit as recommended by Dryad (http://wiki.datadryad.org/Large_File_Transfer).
DOI: 10.5061/dryad.q7j256r/1
title: Dalerum-et-al

description: Raw trap data of each morpho-species, as well as the spatial coordinates for each cluster of traps.
DOI: 10.5061/dryad.r1t6fj5/2
title: Fat mass estimates

description: The file contains the estimates (mean and standard deviation) of fat mass at departure from and arrival to the colony for each individual included in the analysis.
DOI: 10.5061/dryad.r9q30g0/1
title: Xylem embolism resistance in Laurus nobilis L.

description: This file contains the dataset used in this paper. It refers to microCT and optical observations, centrifugation measurements and seasonal minimum midday water potential monitoring.
DOI: 10.5061/dryad.t013r0s/1
title: WisecondorX output tables

description: Processed copy number alteration files. Includes 20 healthy NIPT and gDNA samples; and another 15 NIPT and 5 gDNA cases with validated aberrations. The loci of the rearrangements can be found in Supplementary material of the paper.
DOI: 10.5061/dryad.t0680db/10
title: Code - Plot figure
DOI: 10.5061/dryad.t0680db/11
title: Code - results
DOI: 10.5061/dryad.t0680db/12
title: Code - simulate
DOI: 10.5061/dryad.t0680db/13
title: READ ME
DOI: 10.5061/dryad.tp7519s/1
title: Fanson et al., 2008, Aging Cell - No Choice

description: Data from Fanson et al. 2008 Aging Cell. Organism: Queensland fruit fly (Bactrocera tryoni). Data published here with permission of the authors. Fanson, B.G., Weldon, C.W., Pérez‐Staples, D., Simpson, S.J. and Taylor, P.W., 2009. Nutrients, not caloric restriction, extend lifespan in Queensland fruit flies (Bactrocera tryoni). *Aging cell*, 8(5), pp.514-523. https://doi.org/10.1111/j.1474-9726.2009.00497.x
DOI: 10.5061/dryad.tp7519s/2
title: Lee et al., 2008, PNAS - Survival

description: Data from Lee et al. 2008 PNAS. Organism: Drosophila melanogaster. 
Data published here with permission of the authors. Lee, K.P., Simpson, S.J., Clissold, F.J., Brooks, R., Ballard, J.W.O., Taylor, P.W., Soran, N. and Raubenheimer, D., 2008. Lifespan and reproduction in Drosophila: new insights from nutritional geometry. *Proceedings of the National Academy of Sciences*, 105(7), pp.2498-2503. https://doi.org/10.1073/pnas.0710787105
DOI: 10.17632/5pdbdf6c6x.1
title: Data for: Co-occurring mental illnesses and substance use disorders: Evidence from Cyprus

description: Data randomly selected from the outpatient treatment centre of Veresies Clinic, a private psychiatric agency in Cyprus. Participants (n = 100) are individuals with substance use disorders, who had asked for treatment and who have been advised to start individual treatment after a standardized admission assessment with the European Addiction Severity Index.
DOI: 10.17632/rxrspdhbzj.1
title: Data for: Typical steppe ecosystem maintains high stability by decreasing the connections among recovery, resistance, and variability under high grazing pressure

description: Sheep density data offered from FAO. Graphical data with Tif. format.
DOI: 10.17632/skfxs3xj2r.1
title: Data for: A Membrane Algorithm Based on Chemical Reaction Optimization for Many-Objective Optimization Problems

description: The proposed algorithm are executed independently 30 times on CEC'2018 Competition on Many-Objective Optimization.
DOI: 10.17632/ybjt9gkzr2.1
title: Data for: Cerrado ecoregions: A spatial framework to assess and prioritize Brazilian savanna environmental diversity for conservation

description: Shapefile of the Cerrado ecoregion map.
DOI: 10.5061/dryad.19kd421/1
title: Carbonate Budgets Central Red Sea

description: Data files contain the measurements of physicochemical variables, reef census, and reef growth data from a monitoring study conducted in the coral reefs of the central Red Sea in 2014. Monitoring stations were located at depths between 7 - 9 m, where loggers were deployed 1 - 1.5 m from the reef benthos. Data was collected from a nearshore reef (at 3 km distance from shore), a midshore reef (at 10 km distance from shore), and an offshore reef (at 25 km distance from shore).
These data were use to describe carbonate budgets and eco-environmental drivers in the coral reefs of the central Red Sea. Please refer to the Materials & Methods section of the research article Roik et al. 2018 (Biogeosciences) for more details.
DOI: 10.5061/dryad.1hc582s/1
title: Dryad data for Polley et al_2018_New Phytologist

description: Data are from a 10 year (2006-2015) CO2 enrichment experiment of constructed communities of tallgrass prairie plants in central Texas, USA using the Lysimeter CO2 enrichment gradient facility (LYCOG)
DOI: 10.5061/dryad.1v2k8b1/1
title: Physical and spatial data (n=111 atolls)

description: The data contains physical and spatial measurements, the number of endemic and indigenous species per atoll, and some criteria used to estimate the level of human impact.
DOI: 10.5061/dryad.2qp305p/2
title: CS_rubber_block

description: feature vectors describing data fields for case study 2 (rubber block)
DOI: 10.5061/dryad.2qp305p/3
title: CS_ibeam

description: feature vectors representing data fields in case study 1(i-beam)
DOI: 10.5061/dryad.2qp305p/4
title: CS_bonnet

description: feature vectors describing data in case study 3 (bonne liner)
DOI: 10.5061/dryad.3181p74/1
title: Additional thematised quotations

description: Supplemental participant quotations organised into themes and sub-themes to provide further support for the study results.
DOI: 10.5061/dryad.3181p74/2
title: Interview topic guide

description: Questions related to the personal and social experiences of younger stroke survivors extracted from the topic guide of the larger qualitative study.
DOI: 10.5061/dryad.3ss2t53/1
title: Adults

description: This file contains all phenotypic and reproductive success data, and population assignment details for each individual adult salmon sampled at the main study site, lower Utsjoki, over for cohort years (2011-15), and the secondary site, Akujoki, for 2011 cohort year.
DOI: 10.5061/dryad.3ss2t53/2
title: Microsatellite genotypes

description: This file contains all microsatellite genotype data for adults and offspring used in parentage assignments, for all years and sampling locations. Microsatellite loci are listed in two columns, (a) for the first allele and (b) for the second allele.
DOI: 10.5061/dryad.3ss2t53/3
title: MateChoice

description: This file contains data for each pair of adults identified from offspring parentage assignments as having mated together. These data were used to test for assortative mating and other aspects of mate choice.
DOI: 10.5061/dryad.3ss2t53/4
title: Parentage Assignments

description: This file contains the output of the pedigree fit, i.e. parentage assignments, for all sampled offspring. For ease of interpretation, the origin (local or disperser) and the natal population of the mother and father are also provided.
DOI: 10.5061/dryad.425vg4m/5
title: phyluce_workflow

description: Text file of script usage workflow of the analyses performed in PHYLUCE and RAxML.
DOI: 10.5061/dryad.425vg4m/6
title: UCE_alignments

description: Zip of individual UCE loci alignments from MAFFT in nexus format, output of internal_trim.sh and internal_trim_empIns.sh scripts, for input into Gblocks.
DOI: 10.5061/dryad.5qb8387/1
title: Supplementary Figure 1

description: Presentation of the 3D-models: the sampled ornamented osteoderms (A, C, E, G, I, K) and their smoothed version (B, D, F, H, J, L). The original surface of the 3D envelopes was comprised between 500k and 2 million triangles for each specimen after the scan or the photogrammetry acquisition. After we rescaled all the obtained 3D-objects to the same centroid size (as detailed in the text), we simplified the surface and reduced the number of surface triangles to a value comprised between 20k and 30k using the remeshing tools of Geomagic studio 12 along the following steps: 1) “quick smooth”:  a tool which homogenizes the mesh into similar triangles (size and shape) while having no significant incidence on the resulting morphology. 2) “decimate”: a tool which allows to obtain a reduction of the mesh while not deteriorating the details of the surface. The resulting mesh is visible on the figure for each model. X: the transversal axis; Y: the longitudinal axis; Z: the vertical axis. The scale bars refer to the size of the 3D objects after the scale modification which leads all specimens to share the same centroid size (see text for details).
DOI: 10.5061/dryad.5qb8387/2
title: Supplementary Figure 2

description: Convergence study with respect to the mesh size. Numerical results obtained for the Caiman crocodilus ornamented model (vertical force, reference values of the modeling parameters) using different mesh sizes; a star denotes the model presented in this study. VF1: high-stress volume fraction corresponding to a threshold of σ1 = 100 MPa (which roughly corresponds to the strength of compact bone). VF2: high-stress volume fraction corresponding to a threshold of σ2 = σ1/ 2.
DOI: 10.5061/dryad.5qb8387/3
title: Supplementary Figure 3

description: Parametric analysis in Caiman crocodilus with respect to the number of adjacent osteoderms (N). A: Average von Mises stress in the osteoderm. B: high-stress volume fractions VF1 (blue line, right side scale) and VF2 (purple line, left side scale). Relevant reference parameters are: Eo = 10 GPa (Young’s modulus of the osteoderm); Eb = 0.1 GPa (Young’s modulus of the basal tissue); α = 0° and λ = 0° (Force orientation).
DOI: 10.5061/dryad.6pv18k3/10
title: Table1.020517_155944

description: Sound data used in Table 1 and a subset of entire dataset
DOI: 10.5061/dryad.6pv18k3/11
title: Table1.020517_162934

description: Sound data used in Table 1 and a subset of entire dataset
DOI: 10.5061/dryad.6pv18k3/12
title: Table1.020517_161439

description: Sound data used in Table 1 and a subset of entire dataset
DOI: 10.5061/dryad.6pv18k3/13
title: Table1.020517_164429

description: Sound data used in Table 1 and a subset of entire dataset
DOI: 10.5061/dryad.6pv18k3/14
title: Table1results

description: Results for Table 1
DOI: 10.5061/dryad.6pv18k3/6
title: Table1.020517_150001

description: Sound data used in Table 1 and a subset of entire dataset
DOI: 10.5061/dryad.6pv18k3/7
title: Table1.020517_151457

description: Sound data used in Table 1 and a subset of entire dataset
DOI: 10.5061/dryad.6pv18k3/8
title: Table1.020517_152952

description: Sound data used in Table 1 and a subset of entire dataset
DOI: 10.5061/dryad.6pv18k3/9
title: Table1.020517_154448

description: Sound data used in Table 1 and a subset of entire dataset
DOI: 10.5061/dryad.70t85k2/5
title: Mappable regions

description: Contains 'ZeaV4.map35.plus20.bed', a conservative mappability bed file described in the supplemental methods.
DOI: 10.5061/dryad.70t85k2/6
title: README

description: README for repository contents
DOI: 10.5061/dryad.7hk6523/1
title: Stable Isotope data for Feathers and Claws collected from Gray cheeked Thrush during migration in Northern Colombia

description: File contains individual delta 2H (deuterium) values of feathers (Primary 1) and claws (tip of both hallux claws) collected from Gray-cheeked Thrush during migration in northern Colombia. Additional data include the Band number with which each individual was tagged, age (HY/SY or AHY/ASY), sex (male of female), fat (ordinal scale from 0 to 8), muscle score (ordinal scale from 0 to 3), wing chord (in millimeters mm), and weight (in grams g). The Claw data also contain a column for corrected Deuterium values due to the 2015 El Niño event.
DOI: 10.5061/dryad.84q8c68/1
title: Experimental data

description: Results from all laboratory experiments conducted in this study.
DOI: 10.5061/dryad.8mj8fc5/1
title: Short-term spreading time in different BA scale-free networks

description: Short-term spreading time with different numbers of initial spreaders and different structures of BA scale-free networks.
DOI: 10.5061/dryad.8vj725t/1
title: Miramichi Ssal genotype data

description: ZIP archive containing Miramichi River Atlantic Salmon genotype data in binary PLINK v1.9 format (.BED, .BIM, .FAM)
DOI: 10.5061/dryad.cp39t21/1
title: Ditteletal_Ecography

description: See ReadMe