cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5422912.v2
title: The seventh pandemic of cholera in Europe revisited by microbial genomics

description: This study report a whole-genome analysis of 1,324 7seventh pandemic Vibrio cholerae El Tor isolates, including 172 non travel-related European isolates collected between 1970 and 2011, providing us with unprecedented insight into the geographical and spatial spread of this pathogen across Europe.<br>
DOI: 10.6084/m9.figshare.11858043
title: MARAS program and photographs

description: Compressed .tgz file that upon restoration generates a complete version of the MARAS system written in PHP 5.3 (www.php.net) and PostgreSQL (www.postgresql.org). program code, and all the monitor photographs . In order to access the database a password must be set up in the file /exports/production/maras-www/bd/Bd.Main.Configuraciones.Class.php. Photographs are included in file folder tree with the structure: /exports/production/maras-www/imagenes/fotos_monitores/id.monitor/id.observation The “id.monitor” folders are code numbers of each MARAS monitor, as listed in the “MARAS sites and codes dec2019” file. The “id.observation” folder is the number of assessment of the monitor. Each “id.observation” folder has seven files: /diag.der ; /diag.izq; /foto-grupo; /poste_central; /transecta_central; /transecta_lateral; /transecta_suelo. These files are the photographs of monitors and observation teams in jpg format, taken from different positions as detailed in the MARAS manuals
DOI: 10.6084/m9.figshare.11855472
title: MARAS SQL Database

description: Complete MARAS data base information backup of date 11/02/2020. It should be restored in Postgre SQL.
DOI: 10.6084/m9.figshare.11865375
title: Google earth file of MARAS monitors

description: Google Eath kml file showing the location of MARAS monitors. Information includes Country, Location number, Site name, Province, Setup date, Long, Lat, Altitude SRTM_30 (m.a.s.l), Departament, Landform, Biozone, Mean annual temp °C Worldclim and Mean annual rainfall (mm) Worldclim.
DOI: 10.6084/m9.figshare.12517544
title: Maras monitoring plots main variables .xls

description: Location and main vegetation, soil, land function and floristic variables for 426 MARAS monitoring plots, including 247 second assessments and 23 third assessments in .xla format. Variables of this file are described in Table 7 (online only). Each one of the 687 rows represents a monitoring plot reading with location, name, date of assessment, mean temperature and annual precipitation, aridity index and stocking rate data. Vegetation variables are cover, diversity, bare soil, ephemerals, standing dead and cryptogams. Vegetation structure includes patch and interpatch length, basal cover, patch height and width. Land Function Analysis includes indexes of Stability, Infiltration and Nutrient recycling. Soil laboratory results for two samples (patch and interpatch) include pH 1:2.5, conductivity (dS/m), Organic matter (%), organic carbon, Nitrogen (%), clay, silt and sand content (%). The rest of the columns are absolute cover values for all the vascular perennial species detected.
DOI: 10.6084/m9.figshare.12517550
title: MARAS worksheets English

description: Worksheets used for field data collection in MARAS protocol. English version.
DOI: 10.6084/m9.figshare.11861289
title: MARAS manual english version

description: Field manual Oliva et al 2011 that describes materials and methods.
DOI: 10.6084/m9.figshare.12517553
title: MARAS worksheets Spanish

description: Field worksheets used for data collection in the MARAS protocol. Spanish (original) version.
DOI: 10.6084/m9.figshare.12560192
title: Biozone, land units and administrative maps in shapefiles

description: Biozone, land units and administrative units (provinces and counties) used in the MARAS project. Files are in shape format with metadata.
DOI: 10.6084/m9.figshare.12786584
title: Maras monitoring plots csv format

description: Machine-readable file separated by commas and without special characters. Shows the location and main vegetation, soil, land function and floristic variables for 426 MARAS monitoring plots, including 247 second assessments and 23 third assessments in .csv format. Variables of this file are described in Table 7 (online only). Each one of the 687 rows represents a monitoring plot reading with location, name, date of assessment, mean temperature and annual precipitation, aridity index and stocking rate data. Vegetation variables are cover, diversity, bare soil, ephemerals, standing dead and cryptogams. Vegetation structure includes patch and interpatch length, basal cover, patch height and width. Land Function Analysis includes indexes of Stability, Infiltration and Nutrient recycling. Soil laboratory results for two samples (patch and interpatch) include pH 1:2.5, conductivity (dS/m), Organic matter (%), organic carbon, Nitrogen (%), clay, silt and sand content (%). The rest of the columns are absolute cover values for all the vascular perennial species detected.
DOI: 10.6084/m9.figshare.11861283
title: Manual de monitores MARAS

description: Field manual Oliva et al 2011 in spanish that describes MARAS materials and methods.
DOI: 10.6084/m9.figshare.11855472.v1
title: MARAS SQL Database

description: Complete MARAS data base information backup of date 11/02/2020. It should be restored in Postgre SQL.
DOI: 10.6084/m9.figshare.12517553.v1
title: MARAS worksheets Spanish

description: Field worksheets used for data collection in the MARAS protocol. Spanish (original) version.
DOI: 10.6084/m9.figshare.11858043.v1
title: MARAS program and photographs

description: Compressed .tgz file that upon restoration generates a complete version of the MARAS system written in PHP 5.3 (www.php.net) and PostgreSQL (www.postgresql.org). program code, and all the monitor photographs . In order to access the database a password must be set up in the file /exports/production/maras-www/bd/Bd.Main.Configuraciones.Class.php. Photographs are included in file folder tree with the structure: /exports/production/maras-www/imagenes/fotos_monitores/id.monitor/id.observation The “id.monitor” folders are code numbers of each MARAS monitor, as listed in the “MARAS sites and codes dec2019” file. The “id.observation” folder is the number of assessment of the monitor. Each “id.observation” folder has seven files: /diag.der ; /diag.izq; /foto-grupo; /poste_central; /transecta_central; /transecta_lateral; /transecta_suelo. These files are the photographs of monitors and observation teams in jpg format, taken from different positions as detailed in the MARAS manuals
DOI: 10.6084/m9.figshare.11861289.v1
title: MARAS manual english version

description: Field manual Oliva et al 2011 that describes materials and methods.
DOI: 10.6084/m9.figshare.12517544.v1
title: Maras monitoring plots main variables .xls

description: Location and main vegetation, soil, land function and floristic variables for 426 MARAS monitoring plots, including 247 second assessments and 23 third assessments in .xla format. Variables of this file are described in Table 7 (online only). Each one of the 687 rows represents a monitoring plot reading with location, name, date of assessment, mean temperature and annual precipitation, aridity index and stocking rate data. Vegetation variables are cover, diversity, bare soil, ephemerals, standing dead and cryptogams. Vegetation structure includes patch and interpatch length, basal cover, patch height and width. Land Function Analysis includes indexes of Stability, Infiltration and Nutrient recycling. Soil laboratory results for two samples (patch and interpatch) include pH 1:2.5, conductivity (dS/m), Organic matter (%), organic carbon, Nitrogen (%), clay, silt and sand content (%). The rest of the columns are absolute cover values for all the vascular perennial species detected.
DOI: 10.6084/m9.figshare.11861283.v1
title: Manual de monitores MARAS

description: Field manual Oliva et al 2011 in spanish that describes MARAS materials and methods.
DOI: 10.6084/m9.figshare.12517550.v1
title: MARAS worksheets English

description: Worksheets used for field data collection in MARAS protocol. English version.
DOI: 10.6084/m9.figshare.12560192.v1
title: Biozone, land units and administrative maps in shapefiles

description: Biozone, land units and administrative units (provinces and counties) used in the MARAS project. Files are in shape format with metadata.
DOI: 10.6084/m9.figshare.12786584.v1
title: Maras monitoring plots csv format

description: Machine-readable file separated by commas and without special characters. Shows the location and main vegetation, soil, land function and floristic variables for 426 MARAS monitoring plots, including 247 second assessments and 23 third assessments in .csv format. Variables of this file are described in Table 7 (online only). Each one of the 687 rows represents a monitoring plot reading with location, name, date of assessment, mean temperature and annual precipitation, aridity index and stocking rate data. Vegetation variables are cover, diversity, bare soil, ephemerals, standing dead and cryptogams. Vegetation structure includes patch and interpatch length, basal cover, patch height and width. Land Function Analysis includes indexes of Stability, Infiltration and Nutrient recycling. Soil laboratory results for two samples (patch and interpatch) include pH 1:2.5, conductivity (dS/m), Organic matter (%), organic carbon, Nitrogen (%), clay, silt and sand content (%). The rest of the columns are absolute cover values for all the vascular perennial species detected.
DOI: 10.6084/m9.figshare.11865375.v1
title: Google earth file of MARAS monitors

description: Google Eath kml file showing the location of MARAS monitors. Information includes Country, Location number, Site name, Province, Setup date, Long, Lat, Altitude SRTM_30 (m.a.s.l), Departament, Landform, Biozone, Mean annual temp °C Worldclim and Mean annual rainfall (mm) Worldclim.
DOI: 10.6084/m9.figshare.13013669
title: Supplementary Material for: Eltrombopag for the Treatment of Severe Inherited Thrombocytopenia

description: Inherited thrombocytopenias correspond to a group of hereditary disorders characterized by a reduced platelet count, platelet dysfunction, and a family history of thrombocytopenia. It is commonly associated with mucocutaneous bleeding. Thrombocytopenia results from mutations in genes involved in megakaryocyte differentiation, platelet formation, and clearance. Here we report on a patient presenting with severe syndromic inherited thrombocytopenia manifesting as spontaneous mucocutaneous bleeds, requiring frequent platelet transfusions. Thrombocytopenia was explained by the presence of 4 mutations in 3 hematopoietic transcription factor genes: <i>FLI1</i>, <i>RUNX1</i>, and <i>ETV6</i>. The patient was successfully treated with high-dose eltrombopag at 150 mg/day, an orally available non-peptide thrombopoietin receptor agonist. Since the start of treatment 23 months ago, the manifestations of bleeding have resolved, and no platelet transfusions or corticosteroids have been required. The patient has no clinical or laboratory evidence of myeloid malignancy so far.
DOI: 10.6084/m9.figshare.13013669.v1
title: Supplementary Material for: Eltrombopag for the Treatment of Severe Inherited Thrombocytopenia

description: Inherited thrombocytopenias correspond to a group of hereditary disorders characterized by a reduced platelet count, platelet dysfunction, and a family history of thrombocytopenia. It is commonly associated with mucocutaneous bleeding. Thrombocytopenia results from mutations in genes involved in megakaryocyte differentiation, platelet formation, and clearance. Here we report on a patient presenting with severe syndromic inherited thrombocytopenia manifesting as spontaneous mucocutaneous bleeds, requiring frequent platelet transfusions. Thrombocytopenia was explained by the presence of 4 mutations in 3 hematopoietic transcription factor genes: <i>FLI1</i>, <i>RUNX1</i>, and <i>ETV6</i>. The patient was successfully treated with high-dose eltrombopag at 150 mg/day, an orally available non-peptide thrombopoietin receptor agonist. Since the start of treatment 23 months ago, the manifestations of bleeding have resolved, and no platelet transfusions or corticosteroids have been required. The patient has no clinical or laboratory evidence of myeloid malignancy so far.
DOI: 10.15468/2fkqnk
title: Acanthosomatidae

description: This dataset contains the digitized treatments in Plazi based on the original book chapter Grazia, Jocelia, Schwertner, Cristiano F. (2014): Acanthosomatidae. In: 3. San Miguel Tucumán, Argentina: Universidad Nacional de Tucumán: 399-402, DOI: http://doi.org/10.5281/zenodo.4055854
DOI: 10.5281/zenodo.4055891
title: N immobilization treatment revisited: a retarded and temporary effect unfolded in old field restoration

description: Data and R script for the manuscript
DOI: 10.15468/6vkzck
title: Scutelleridae

description: This dataset contains the digitized treatments in Plazi based on the original book chapter Aline Barcellos, Joseph Eger, Jr., Jocelia Grazia (2014): Scutelleridae. In: 3. San Miguel de Tucumán, Argentina: Universidad Nacional de Tucumán: 409-416, DOI: http://doi.org/10.5281/zenodo.4055878
DOI: 10.17037/data.00001870
title: Interstate trade of cereals in India

description: Data on the interstate trade of cereals in India (2011-12), modelled using a food supply and demand balance model to estimate volumes of trade and a linear programming model that minimizes the cost of transportation to estimate the direction of trade flows. Trade matrices and model input data available (distance between states, and supply and demand estimates). Data is available for seven cereals; rice, wheat, maize, sorghum (jowar), bajra, ragi and small millets. We include the trade of rice and wheat through the Public Distribution System (PDS), and non-PDS cereal trade.
description: Data on the interstate trade flows between Indian states for the year 2011-12 (35 states). Data can be found in excel files (see info tab for details). Trade flows have been modelled using a minimised cost model. For full details on methods of analysis see: Harris et al., 2020. Trading water: virtual water flows through interstate cereal trade in India. Environmental Research Letters.
DOI: 10.6084/m9.figshare.12973028
title: "Choice of methods can determine which behavioral determinates are identified for targeting in future behavior change interventions: Increasing antibiotic adherence in Pakistan" doi: 10.1177/1359105320962267

description: Data sharing for: <br>"Choice of methods can determine which behavioral determinates are identified for targeting in future behavior change interventions: Increasing antibiotic adherence in Pakistan" doi: 10.1177/1359105320962267<br><br>co-authors:<br><br>Umar Taj (https://orcid.org/0000-0003-2797-6110)<br>Kelly Schmidtke (http://orcid.org/0000-0001-5993-0358) Daniel Read (https://orcid.org/0000-0001-6672-9310)Ivo Vlaev (https://www.wbs.ac.uk/about/person/ivo-vlaev)
DOI: 10.6084/m9.figshare.12973028.v1
title: "Choice of methods can determine which behavioral determinates are identified for targeting in future behavior change interventions: Increasing antibiotic adherence in Pakistan" doi: 10.1177/1359105320962267

description: Data sharing for: <br>"Choice of methods can determine which behavioral determinates are identified for targeting in future behavior change interventions: Increasing antibiotic adherence in Pakistan" doi: 10.1177/1359105320962267<br><br>co-authors:<br><br>Umar Taj (https://orcid.org/0000-0003-2797-6110)<br>Kelly Schmidtke (http://orcid.org/0000-0001-5993-0358) Daniel Read (https://orcid.org/0000-0001-6672-9310)Ivo Vlaev (https://www.wbs.ac.uk/about/person/ivo-vlaev)
DOI: 10.6084/m9.figshare.13013831
title: Supplementary Material for: Cardiac Troponin Is Elevated in Patients with Thyrotoxicosis and Decreases as Thyroid Function Improves and Brain Natriuretic Peptide Levels Decrease

description: <b><i>Introduction:</i></b> High-sensitive cardiac troponin reflects micro-myocardial injury in the absence of overt myocardial infarction. <b><i>Objective:</i></b> This study aimed to clarify how thyrotoxicosis affects cardiac troponin. <b><i>Methods:</i></b> This was a prospective observational study in Japan. Untreated patients with thyrotoxicosis who visited Ito Hospital were enrolled, and medical treatment was initiated for hyperthyroidism. Thyroid function, high-sensitive troponin I (hsTnI), and brain natriuretic peptide (BNP) were measured at baseline and then every 3 months for 1 year. <b><i>Results:</i></b> Data from a total of 143 patients (median age, 42 years; 32 men and 111 women) were investigated. At baseline, median hsTnI was 1.9 pg/mL and ranged from 0 to 69.6 pg/mL. Five patients (3.5%) had a high hsTnI value that exceeded 26.2 pg/mL, which is used as the cutoff for diagnosis of myocardial infarction, and 22 patients (15.4%) had an intermediate value between 5.0 and 26.2 pg/mL. Multivariable regression analysis showed that significant predictors of the hsTnI value were age (β = 0.20, <i>p</i> = 0.01) and BNP (β = 0.43, <i>p</i> &lt; 0.0001) (<i>R</i><sup>2</sup> = 0.27, <i>F</i> = 26.0, <i>p</i> &lt; 0.0001), and significant predictors of the BNP value were age (β = 0.23, <i>p</i> = 0.001), hemoglobin (β = −0.43, <i>p</i> &lt; 0.0001), free T<sub>4</sub> (FT<sub>4</sub>) (β = 0.23, <i>p</i> = 0.001), and hsTnI (β = 0.27, <i>p</i> &lt; 0.0001) (<i>R</i><sup>2</sup> = 0.49, <i>F</i> = 33.8, <i>p</i> &lt; 0.0001). Correlations were found between a decrease in hsTnI and BNP in the first 3 months (ρ = 0.49, <i>p</i> &lt; 0.0001). A decrease in FT<sub>4</sub> in the first 3 months was weakly correlated with decreases in hsTnI (ρ = 0.32, <i>p</i> = 0.0004) and BNP (ρ = 0.32; <i>p</i> = 0.0003). Of the 27 patients with elevated hsTnI (≥5.0 pg/mL), the hsTnI level was normalized in 20 patients within a year. <b><i>Conclusions:</i></b> In thyrotoxicosis, the myocardial biomarker hsTnI is elevated in about 20% of patients; hsTnI levels decrease as thyroid function improves and BNP decreases.
DOI: 10.6084/m9.figshare.13013831.v1
title: Supplementary Material for: Cardiac Troponin Is Elevated in Patients with Thyrotoxicosis and Decreases as Thyroid Function Improves and Brain Natriuretic Peptide Levels Decrease

description: <b><i>Introduction:</i></b> High-sensitive cardiac troponin reflects micro-myocardial injury in the absence of overt myocardial infarction. <b><i>Objective:</i></b> This study aimed to clarify how thyrotoxicosis affects cardiac troponin. <b><i>Methods:</i></b> This was a prospective observational study in Japan. Untreated patients with thyrotoxicosis who visited Ito Hospital were enrolled, and medical treatment was initiated for hyperthyroidism. Thyroid function, high-sensitive troponin I (hsTnI), and brain natriuretic peptide (BNP) were measured at baseline and then every 3 months for 1 year. <b><i>Results:</i></b> Data from a total of 143 patients (median age, 42 years; 32 men and 111 women) were investigated. At baseline, median hsTnI was 1.9 pg/mL and ranged from 0 to 69.6 pg/mL. Five patients (3.5%) had a high hsTnI value that exceeded 26.2 pg/mL, which is used as the cutoff for diagnosis of myocardial infarction, and 22 patients (15.4%) had an intermediate value between 5.0 and 26.2 pg/mL. Multivariable regression analysis showed that significant predictors of the hsTnI value were age (β = 0.20, <i>p</i> = 0.01) and BNP (β = 0.43, <i>p</i> &lt; 0.0001) (<i>R</i><sup>2</sup> = 0.27, <i>F</i> = 26.0, <i>p</i> &lt; 0.0001), and significant predictors of the BNP value were age (β = 0.23, <i>p</i> = 0.001), hemoglobin (β = −0.43, <i>p</i> &lt; 0.0001), free T<sub>4</sub> (FT<sub>4</sub>) (β = 0.23, <i>p</i> = 0.001), and hsTnI (β = 0.27, <i>p</i> &lt; 0.0001) (<i>R</i><sup>2</sup> = 0.49, <i>F</i> = 33.8, <i>p</i> &lt; 0.0001). Correlations were found between a decrease in hsTnI and BNP in the first 3 months (ρ = 0.49, <i>p</i> &lt; 0.0001). A decrease in FT<sub>4</sub> in the first 3 months was weakly correlated with decreases in hsTnI (ρ = 0.32, <i>p</i> = 0.0004) and BNP (ρ = 0.32; <i>p</i> = 0.0003). Of the 27 patients with elevated hsTnI (≥5.0 pg/mL), the hsTnI level was normalized in 20 patients within a year. <b><i>Conclusions:</i></b> In thyrotoxicosis, the myocardial biomarker hsTnI is elevated in about 20% of patients; hsTnI levels decrease as thyroid function improves and BNP decreases.
DOI: 10.6084/m9.figshare.12950093.v1
title: Data from 'Exploiting cross-dialectal gold syntax for low-resource historical languages: towards a generic parser for pre-modern Slavic'

description: This repository contains all the datasets used in the paper 'Exploiting cross-dialectal gold syntax for low-resource historical languages: towards a generic parser for pre-modern Slavic' to be presented at the 1st Computational Humanities Workshop (2020) and to appear in the conference proceedings.<br>*full description to come*
DOI: 10.6084/m9.figshare.1289323
title: iDrug-Target: predicting the interactions between drug compounds and target proteins in cellular networking via benchmark dataset optimization approach

description: Information about the interactions of drug compounds with proteins in cellular networking is very important for drug development. Unfortunately, all the existing predictors for identifying drug–protein interactions were trained by a skewed benchmark data-set where the number of non-interactive drug–protein pairs is overwhelmingly larger than that of the interactive ones. Using this kind of highly unbalanced benchmark data-set to train predictors would lead to the outcome that many interactive drug–protein pairs might be mispredicted as non-interactive. Since the minority interactive pairs often contain the most important information for drug design, it is necessary to minimize this kind of misprediction. In this study, we adopted the neighborhood cleaning rule and synthetic minority over-sampling technique to treat the skewed benchmark datasets and balance the positive and negative subsets. The new benchmark datasets thus obtained are called the optimized benchmark datasets, based on which a new predictor called iDrug-Target was developed that contains four sub-predictors: iDrug-GPCR, iDrug-Chl, iDrug-Ezy, and iDrug-NR, specialized for identifying the interactions of drug compounds with GPCRs (G-protein-coupled receptors), ion channels, enzymes, and NR (nuclear receptors), respectively. Rigorous cross-validations on a set of experiment-confirmed datasets have indicated that these new predictors remarkably outperformed the existing ones for the same purpose. To maximize users’ convenience, a public accessible Web server for iDrug-Target has been established at http://www.jci-bioinfo.cn/iDrug-Target/, by which users can easily get their desired results. It has not escaped our notice that the aforementioned strategy can be widely used in many other areas as well.