cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/np5qwp
title: Shotgun Metagenome Sequencing of Lake Soyang

description: The lakewater samples were collected from different depths and differnet seasons. The DNA was extracted after filtration through 0.2 um pore-size membrane.
DOI: 10.25549/usctheses-ouc11399lp55
title: Mesoscale Perfusion Imaging with pseudo-Continuous Arterial Spin Labeling at Ultra-high Field MRI
DOI: 10.25549/usctheses-ouc11399lp53
title: Investigation of RG Motifs in C. Elegans Argonaute Proteins
DOI: 10.15468/bvcp7p
title: Latitudinal diversity patterns of pelagic copepods in the Pacific using metagenetic analysis

description: Latitudinal diversity patterns of pelagic copepods in the Pacific were investigated from 40?S to 68?N along 170?W using metagenetic analysis of nuclear large subunit ribosomal DNA.
DOI: 10.5281/zenodo.15302415
title: A Standardized Benchmark Set of Clustering Problem Instances for Comparing Black-Box Optimizers -- Reproducibility and Additional Data

description: This is the reproducibilty repository for the paper "A Standardized Benchmark Set of Clustering Problem Instances for Comparing Black-Box Optimizers"

The main file is the jupyter-notebook 'Reproducibility.ipynb', this contains the full description of the repository and the steps required to replicate the results presented in the paper. 

 

Note: there are some naming inconsistencies between the notebook and the files provided in the zip-folder. When 'collect_data_cma.py' is mentioned, this should be 'data_collection_cma.py' from the scripts folder, and similarly for the other python scripts.
DOI: 10.5281/zenodo.15302416
title: A Standardized Benchmark Set of Clustering Problem Instances for Comparing Black-Box Optimizers -- Reproducibility and Additional Data

description: This is the reproducibilty repository for the paper "A Standardized Benchmark Set of Clustering Problem Instances for Comparing Black-Box Optimizers"

The main file is the jupyter-notebook 'Reproducibility.ipynb', this contains the full description of the repository and the steps required to replicate the results presented in the paper. 

 

Note: there are some naming inconsistencies between the notebook and the files provided in the zip-folder. When 'collect_data_cma.py' is mentioned, this should be 'data_collection_cma.py' from the scripts folder, and similarly for the other python scripts.
DOI: 10.25549/usctheses-ouc11399lp52
title: Assessing Sentinel-3A OLCI Imagery Spectral Ratios Against 2016 In-Situ Observations in the Dark Band Region of the Greenland Ice Sheet
DOI: 10.5281/zenodo.17190829
title: Replication material for paper "Smith et al., (2025): Persistent inequalities in global air quality monitoring should not delay pollution mitigation : PNAS. DOI 10.1073/pnas.2423259122"

description: Country level monitoring data and replication code for the manuscript : "Smith et al., (2025): Persistent inequalities in global air quality monitoring should not delay pollution mitigation : PNAS. DOI 10.1073/pnas.2423259122"
DOI: 10.5281/zenodo.17190830
title: Replication material for paper "Smith et al., (2025): Persistent inequalities in global air quality monitoring should not delay pollution mitigation : PNAS. DOI 10.1073/pnas.2423259122"

description: Country level monitoring data and replication code for the manuscript : "Smith et al., (2025): Persistent inequalities in global air quality monitoring should not delay pollution mitigation : PNAS. DOI 10.1073/pnas.2423259122"
DOI: 10.15468/hyxfc6
title: Savu Sea-Indonesia eDNA Dataset

description: The elasmobranch targeted eDNA project aim to enumerate elasmobranch diversity using eDNA Metabarcoding across eastern Indonesia. A primary goal of the project is to produce a comprehensive database on shark species occurrences in areas around Savu seas, Nusa Tenggara to support current government efforts to save sharks Population. 

To date we have collected more than 10 water samples from MPA areas around Savu Seas using tools designed to collect water samples (sterivex, and Niskin water sampler). The project is a collaboration between Biodiversitas Indonesia and Misool Foundation. As of now, the DNA reads collected from the samples have no Elasmobranch detected, nonetheless we still publish the taxa that were detected from the samples while working on possible eDNA marker that most suitable to detect elasmobranch species.
DOI: 10.15468/jyxakf
title: Marine microbial eukaryote community analysis in Korea

description: To investigate marine microbial euakryote community in Korea, we used the pyrosequencing technology.
DOI: 10.15468/dl.ej4zwg
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lathyrus vernus",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 51 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011421-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/vktdke
title: Effect of genetics and environment on gut bacteria in Anopheles and Aedes mosquitoes.

description: The aim was to investigate the effect of genetics and environment on gut bacteria in adult Anopheles and Aedes mosquito. The mosquitoes were both co-reared and reared separately. Larval water, sugar feeding source and adult mosquito-guts were analysed for bacteria.
DOI: 10.15468/uft5fu
title: Metagenomics of Brava and Tebenquiche lakes microbial mats

description: Atacama region in Chile is one of the most arid locations in the world. Extreme conditions in the area include: high UV irradiation, hypersalinity, drastic temperature changes, and desiccation. Hypersaline lakes can be found in this environment, and therein, bacterial communities thrive in microbial mats and other structures. WGS metagenomics allows to analyze the genes in the environment and infer functional and taxonomic diversity, and also their influence in the biogeochemical setting. In the datasets from this project, two microbial mats from lakes Brava and Tebenquiche, in Atacama region in Chile, were analyzed.
DOI: 10.15468/dl.espdxf
title: Occurrence Download

description: A dataset containing 157 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lathyrus vernus",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 157 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011423-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.seuahh
title: Occurrence Download

description: A dataset containing 1599 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((5.25 50.75,6.05 50.75,6.05 50.85,5.25 50.85,5.25 50.75))",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Heracleum mantegazzianum",
 "Year 1983-2025"
 ]
}

 The dataset includes 1599 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011424-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/3dfshz
title: Biodiversity of autotrophic euglenids based on the group specific DNA metabarcoding approach

description: This study reports a comprehensive analysis of photoautotrophic euglenids’ distribution and biodiversity in 16 small water bodies of various types (including fish ponds, field ponds, rural ponds and park ponds) located in three regions of Poland: Masovia, Masuria and Pomerania during a period of three years. By employing a euglenid specific barcode marker and a curated database of V2 18S rDNA sequences it was possible to identify 97.7 % of euglenid reads at species level. A total of 152 species classified in 13 genera were identified. The number of euglenid species found in one pond varied from 40 to 102. The most common species were Euglena agilis and Euglenaria caudata, found in every analysed waterbody. The highest number of observed species belonged to Trachelomonas and Phacus. Certain species exhibited a tendency to coexist, suggesting the presence of distinct species assemblages. Among them, the most distinctive cluster was associated with water bodies located in the Masuria region, characterized also by the greatest species richness, including many very rare species: Euglenaformis chlorophoenicea, Lepocinclis autumnalis, L. marssonii, Trachelomonas eurystoma, T. manschurica, T. mucosa, T. zuberi, T. zuberi var. nepos.[This dataset was processed using the GBIF Metabarcoding Data Toolkit.]
DOI: 10.15468/6cgkyr
title: Bermuda Atlantic Time-series Study metagenomes

description: Metagenome-assembled genome bins to assess the diversity and evolution of globally abundant deep-ocean bacteria.
DOI: 10.15468/dl.9znaqn
title: Occurrence Download

description: A dataset containing 112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ethiopia",
 "TaxonKey is Boswellia papyrifera"
 ]
}

 The dataset includes 112 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011422-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/sdd0m0
title: microbial Eukaryotes in lakes along an Argentinian-Antarctic geographical gradient

description: Amplicon sequencing dataset (Illumina HiSeq) of Eukaryotes (18S) in lakes along a latitudinal gradient from Southern Argentina to maritime Antarctica
DOI: 10.15468/dl.dv8hpt
title: Occurrence Download

description: A dataset containing 29957 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhizophora mangle",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 29957 records from 285 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011425-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/xdrkbt
title: Protists community in the southern East China Sea

description: 18S rDNA sequences from the southern East China sea
DOI: 10.15468/dl.wgpz5f
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Allium oreophilum)"
 ]
}

 The dataset includes 144 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011427-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vn2kkj
title: Occurrence Download

description: A dataset containing 329 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Carex maackii"
 ]
}

 The dataset includes 329 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011428-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7basz4
title: Occurrence Download

description: A dataset containing 20997 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "HasCoordinate is true",
 "Year is 1918"
 ]
}

 The dataset includes 20997 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011416-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eraxjt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lens nigricans",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011429-250920141307145/datasets/export for details.
DOI: 10.6084/m9.figshare.30196333
title: README.txt

description: Microbime
DOI: 10.6084/m9.figshare.30196333.v1
title: README.txt

description: Microbime
DOI: 10.15468/dl.286dcd
title: Occurrence Download

description: A dataset containing 1092813 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Sus scrofa"
 ]
}

 The dataset includes 1092813 records from 3090 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011350-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4evw8a
title: Occurrence Download

description: A dataset containing 35469 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tanacetum vulgare L.",
 "MediaType is Image",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 35469 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0409578-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gan6or
title: Occurrence Download

description: A dataset containing 3676 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Araliaceae",
 "Geometry POLYGON((-58.798828 9.102096,-63.808593 8.407168,-68.027343 7.275292,-72.685546 3.776559,-77.695312 1.318243,-78.222656 -2.986927,-76.464843 -8.059229,-73.828125 -12.468760,-71.367187 -13.325484,-66.621093 -16.551961,-60.117187 -15.961329,-56.601562 -13.496472,-54.667968 -13.325484,-51.064453 -12.211180,-49.658203 -9.102096,-50.361328 -7.013667,-49.482421 -5.790896,-48.779296 -4.039617,-47.988281 -1.230374,-47.988281 1.757536,-53.349609 7.100892,-58.798828 9.102096))"
 ]
}

 The dataset includes 3676 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009850-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dy9zw3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euphorbia macroclada Boiss.",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020636-240229165702484/datasets/export for details.
DOI: 10.15468/dl.ej1a4f
title: Occurrence Download

description: A dataset containing 25592 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Herbarium Amazonense"
 ]
}

 The dataset includes 25592 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009850-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.txusaq
title: Occurrence Download

description: A dataset containing 396 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Areca triandra Roxb. ex Buch.-Ham."
 ]
}

 The dataset includes 396 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012861-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.atuvqp
title: Occurrence Download

description: A dataset containing 46854 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Apatura iris (Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 46854 records from 474 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067928-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ax6k2
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Renealmia oligosperma K.Schum."
 ]
}

 The dataset includes 79 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009850-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.edc6z9
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cerastium fontanum f. vulgare (Hartm.) M.B.Wyse Jacks.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Observation, Specimen)",
 "Year is greater than 1945"
 ]
}

 The dataset includes 16 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0278733-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sp5k9i
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Espeletia ×verdeana Cuatrec.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009850-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zwabts
title: Occurrence Download

description: A dataset containing 9480 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thapsia villosa L.",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 9480 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008312-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fhqdyd
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Corydoras panda Nijssen & Isbrücker, 1971"
 ]
}

 The dataset includes 64 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0251704-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yodbfp
title: Occurrence Download

description: A dataset containing 956 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gyps bengalensis (Gmelin, 1788)"
 ]
}

 The dataset includes 956 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009851-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cdaeks
title: Occurrence Download

description: A dataset containing 64438 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((119.99433 30.37688,119.88446 30.22932,119.96178 30.03222,120.27105 29.99875,120.28936 30.32069,119.99433 30.37688))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 2000-2024"
 ]
}

 The dataset includes 64438 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067930-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jukkk4
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eremitis fluminensis F.M.Ferreira & R.P.Oliveira"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0157194-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mkkxhg
title: Occurrence Download

description: A dataset containing 26538 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cerceris Latreille, 1802)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Observation, Specimen)",
 "Year is greater than 1945"
 ]
}

 The dataset includes 26538 records from 173 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0278763-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rndf4y
title: Occurrence Download

description: A dataset containing 2039 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heliotropium procumbens Mill."
 ]
}

 The dataset includes 2039 records from 125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009851-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dsh4cg
title: Occurrence Download

description: A dataset containing 27924 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thelypteris palustris Schott",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 27924 records from 241 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008321-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vg3ahe
title: Occurrence Download

description: A dataset containing 4445 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "GadmGid is USA",
 "GadmGid is CAN",
 "GadmGid is MEX"
 ]
 },
 "OccurrenceStatus is Present",
 "TaxonKey is Pinus contorta Douglas ex Loudon",
 "Year 1970-2021"
 ]
}

 The dataset includes 4445 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0288192-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.