cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.18130/v3/sf1ts3
title: Replication Data for: MRI of mouse cerebral cavernomas reveal differential lesion progression and variable permeability to gadolinium

description: METHODS: We established a chronic mouse model of CCM, induced by postnatal ablation of Krit1 with Pdgfb-CreERT, and examined lesion progression in these mice with T2-weighted 7T MRI. We also established a modified protocol for dynamic contrast-enhanced (DCE) MRI and produced quantitative maps of gadolinium tracer gadobenate dimeglumine. 

RESULTS: These mice develop CCM lesions gradually over 4-5 months of age throughout the brain. Precise volumetric analysis of individual lesions revealed non-monotonous behavior, with some lesions temporarily growing smaller. However, the cumulative lesional volume invariably increased over time, and after about 2 months followed a power trend. Using DCE MRI, we produced quantitative maps of gadolinium in the lesions, indicating a high degree of heterogeneity in lesional permeability. 

Animals and Treatments
All animal experiments were approved by the Animal Care and Use Committee at the University of Virginia. To generate experimental animals, male Pdgfb-CreERT mice were crossed to the floxed and null Krit1 alleles (Krit1fl/null) to produce the desired genotype Pdgfb-CreERT; Krit1 fl/null males or females. Krit1 gene ablation was induced with a single subcutaneous injection of 50uL of tamoxifen dissolved in corn oil at a concentration of 2 mg/mL between postnatal day 5 and 7. 

MR Imaging 
A 7T small animal MRI scanner (Bruker/Siemens ClinScan) was used to acquire T2-SPACE and T1 contrast images. Mice were imaged monthly, starting as early as one month of age and as late as 5 months of age. To be included in this study, each animal had to have at least two imaging time points conducted. Three-dimensional T2-SPACE MRIs were acquired for all mice in this study using a repetition time of 3000 ms, echo time of 80 ms, pixel size of 125 μm x 125 μm x 100 μm, and 2 averages. Scan time for the T2-SPACE sequence was ~20 min. T1 contrast mapping was executed by performing 3D spoiled gradient echo sequences at various flip angles before, and 5 minutes after, gadolinium contrast injection, including the following flip angles: 1, 2, 4, 8, 12, 20, and 30°. All sequences in this series had a repetition time of 10 ms, echo time of 2.6 ms, pixel size of 187.5 μm x 187.5 μm x 200 μm, and 1 average. The scan time for the total image series (pre and post contrast injection combined) was ~20 minutes. To initially determine the optimal time to acquire the post-gadolinium image series such that gadolinium accumulation is maximized and time is minimized, the post-series was repeated every 4 minutes following gadolinium injection up to 20 minutes. Gadolinium contrast (MultiHance) was injected as a bolus intravenously with a dose of 0.01 mmol diluted in saline at a molarity of 0.2mmol/mL.
DOI: 10.18130/v3/j6wuro
title: :unav

description: :unav
DOI: 10.18130/v3/4onfrm
title: JL test publishing a file

description: trying to publish dataset file
DOI: 10.18130/v3/gjzwi4
title: Midloch Former Enslaved Dwelling 3D Data Documentation

description: 3D data documentation of the former enslaved dwelling at Midloch Farm, Louisa County, Virginia; Data was collected with X130 and S70 FARO Focus 3D laser scanners; data processed with FARO Scene v.2022 and further edited and rendered with Autodesk ReCap v. 2023; 
&lt;p&gt;
Data files can be downloaded at the following locations:
&lt;BR&gt;
&lt;strong&gt;Coming soon. Contact Will Rourk will@virginia.edu for more info&lt;/strong&gt;
&lt;!--
&lt;br&gt;
&lt;a href="https://3d-data.uvadcos.io/Midloch/Midloch_enslaved_cabin_20230328.zip"&gt;
Raw dataset, FARO Scene project format compressed by zip (19.5 GB) 
&lt;/a&gt;
&lt;br&gt;
&lt;a href="https://3d-data.uvadcos.io/Midloch/MidlochEnslavedCabin_230328_E57.e57"&gt;
Point Cloud Data File - .e57 file format (5.28 GB)
&lt;/a&gt; --&gt;
&lt;/p&gt;
&lt;br/&gt;
PLEASE REFERENCE THE UNIVERSITY OF VIRGINIA LIBRARY WHEN USING THIS DATA
description: To access the data in the FARO Scene project file use the freely available FARO Scene LT software available at https://knowledge.faro.com/Software/FARO_SCENE/SCENE/Software_Download_Installation_and_Release_Notes_for_SCENE_LT
DOI: 10.18130/v3/i5ujmm
title: Test print files from Musgrove et al. "Parylene-C Coating Protects Resin-3D-Printed Devices from Material Erosion and Prevents Cytotoxicity toward Primary Cells"

description: This data set contains design files for 3D printing wells, microchannel chips, and test cubes, as described in "Parylene-C coating protects resin 3D printed devices from materials erosion and cytotoxicity". There are stl files available for each design, and the microchannel chip files can be edited once downloaded to be fitted with varying tubing connections as needed.
description: This data set contains design files for 3D printing wells, microchannel chips, and test cubes, as described in "Parylene-C coating protects resin 3D printed devices from materials erosion and cytotoxicity". There are stl files available for each design, and the microchannel chip files can be edited once downloaded to be fitted with varying tubing connections as needed.
DOI: 10.18130/v3/tr3mr0
title: Montpelier Enslaved Cemetery Site 3D Scan Data

description: 3D data for the site of the enslaved cemetery at Montpelier, the home of James Madison; site was scanned with FARO Focus 3D laser scanners, X130, S70 models; data was processed using FARO Scene v.2022 and edited and optimized using Autodesk ReCap v. 2023; data exports were cropped to emphasize the terrain data; data collected in collaboration with Matt Reeves, Director of Archaeology and Landscape Restoration at Montpelier;
&lt;p&gt;
Data files can be downloaded at the following locations:
&lt;br&gt;
&lt;strong&gt;Coming soon. Contact Will Rourk will@virginia.edu for more info&lt;/strong&gt;

&lt;!-- &lt;a href="https://3d-data.uvadcos.io/Montpelier/MontpEnslCem_scene_E57.zip"&gt;
Raw dataset, FARO Scene project format compressed by zip (12.1 GB) 
&lt;/a&gt;
&lt;br&gt;
&lt;a href="https://3d-data.uvadcos.io/Montpelier/MontpelierEnslavedCemetery_230330_LAS.las"&gt;
Point Cloud Data File - .las file format (11 GB)
&lt;/a&gt;
&lt;br&gt;
&lt;a href="https://3d-data.uvadcos.io/Montpelier/MontpelierEnslavedCemetery_230330_E57.e57"&gt;
Point Cloud Data File - .e57 file format (8.52 GB)
&lt;/a&gt; --&gt;
&lt;/p&gt;
&lt;p&gt;Please credit the University of Virginia Library upon use of this data&lt;/p&gt;
DOI: 10.18130/v3/eibdzc
title: Binary images and Particle Image Velocimetry data and code for mapping channel thread migration in laboratory braided rivers
title: Braided channel migration using PIV

description: Binary images separating channel threads from bars, output from PIVlab analysis, codes for postprocessing, and filtered and unfiltered vector fields for channel thread migration using a laboratory dataset (2023-05-01)
DOI: 10.18130/v3/if4ea7
title: Epigenetics of chronic childhood undernutrition - supplementary files

description: Supplementary files to: "Epigenetics of chronic childhood undernutrition", a dissertation submitted by Kristyna Kupkova in April 2023 to the UVA Department of Biochemistry and Molecular Genetics. The dissertation is available at https://doi.org/10.18130/fv3h-g521
DOI: 10.18130/v3/mmkkel
title: Crohn's Disease

description: This dataset includes microscopic ileal histology images labeled into two classes: Control vs Crohns. 
- Control images IDs start with INCT and Crohns images IDs with INCR. 
- The first eight character in the image ID are patient's ID (e.g., INCT0001).
- Each patient has one or more whole slide images labeled with capital letters (e.g., INCT0001D)
- Image crops extracted from each whole slide image have been labeled like INCT0001D_001
DOI: 10.18130/v3/kta6fy
title: Academical Village Student Rooms Roof between Pavilions VIII-X 3D Data

description: This is data from the student rooms in the Academical Village, University of Virginia, east colonnade between Pavilions VIII and X; the pitched roof, constructed ca. 1830s was removed to be replaced by a modern flat roof; the original Thomas Jefferson era serrated roof was revealed during the demolition process and recorded; the roof was recorded using FARO Focus 3D laser scanners; data was processed with FARO Scene v. 2022; data collected with the help of Shaheen Alikhan; data collected 17 June 2022;
&lt;p&gt;
Data files can be downloaded at the following location:
&lt;br&gt;
&lt;strong&gt;Coming soon. Contact Will Rourk will@virginia.edu for more info&lt;/strong&gt;

&lt;!--
&lt;a href="https://3d-data.uvadcos.io/AcademicalVillage/LawnRoof_Pav8-10_20220617_scene.tar.gz"&gt;
Raw dataset, FARO Scene project format compressed by zip (7.7 GB) 
&lt;/a&gt;
&lt;br&gt;
&lt;a href="https://3d-data.uvadcos.io/file_PTS.pts"&gt;
Point Cloud Data File - .pts file format (XX GB)
&lt;/a&gt;
&lt;br&gt;
&lt;a href="https://3d-data.uvadcos.io/file_E57.e57"&gt;
Point Cloud Data File - .e57 file format (XX GB)
&lt;/a&gt; --&gt;
&lt;/p&gt;
&lt;!--
&lt;p&gt;
Information about the files associated with this dataset can be found in the &lt;a href=""&gt;Read Me&lt;/a&gt; file below.
&lt;/p --&gt;
&lt;p&gt;Please credit the University of Virginia Library upon use of this data&lt;/p&gt;
DOI: 10.18130/v3/p3aptz
title: Data for Environmental Conditions of the Extremes of Star Formation

description: Data to accompany thesis "Environmental Conditions of the Extremes of Star Formation: From Quiescent Clouds to Super Star Clusters"
DOI: 10.15468/dl.d3mud9
title: Occurrence Download

description: A dataset containing 235 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Paramesotriton caudopunctatus (Liu & Hu, 1973)"
 ]
}

 The dataset includes 235 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002504-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18130/v3/1u0e4n
title: Praxinoscope

description: In this project, students will assemble a model of a praxinoscope, observe essential components of animation machines, and determine how the essential components work together to create the illusion of animation.
description: Over time, the development of several physical animation machines extended storytelling capabilities, leading to the birth of cinema. This process of innovation and invention can be characterized in the following way:

1. Advances evolved slowly over periods that spanned decades or centuries.
2. Each advance was inspired by and built upon the foundation of prior inventions.
DOI: 10.18130/v3/x1ty1f
title: 3D Vertical Fraction Strips

description: This manipulative is a 3D version of fraction strips. Each strip is a rectangular piece that will slide onto one of the three vertical pegs so that the fraction strips can stack vertically (rather than lining up horizontally) and represent the value of a fraction in terms of height.
description: The fractions are mounted on one platform with the 1 (whole) always visible so that the student can begin to grasp how all the fractional parts are related to the whole. Each fraction strip is labeled with its fraction name, but only on one side so that they can be made either visible to or hidden from students as they problem solve. Students should be able to understand a fraction as a number on the number line and represent fraction using the fraction strip.
DOI: 10.18130/v3/fpmfkp
title: Multiplication Array Table

description: The manipulative is a physical version of a multiplication chart, shaped similar to a Connect 4 board. The base of the manipulative is a box and the holes along the edges create tunnels for the rods to be inserted, while the holes on the flat face make the rods’ intersection and multiplication product visible.
description: Multiplicative thinking is particularly useful when understanding area, and vice versa. The rows and columns of a rectangular array are equal groups of objects or squares. Finding the total number of them involves thinking about considering which equal groups you want to count (rows or columns) and finding ways to iterate. The total can then be seen as the number of objects, as with eggs in a carton, or the area of the rectangle, as with tiles on a floor. Connecting area and multiplicative thinking also provides a visual proof for the commutative property of multiplication, or why 5 x 7 is equal to 7 x 5. Arrays are used throughout our world to organize objects and area, a key structure that we want students to develop ideas about and be able to use.
DOI: 10.18130/v3/eoia3i
title: Samantha’s Circles

description: Samantha’s Circles is a fraction tool that consists of a collection of rings that are stored on a cylindrical pedestal. Each ring represents a different fraction, and the notches on each ring divide it into equal partitions of the whole.
description: Fractions can be thought of as parts of a whole, ratios, and division. Students should be able to understand fractions through both partitioning a shape into equal sizes and through iterating or counting fractional parts (i.e., 1/4, 2/4, 3/4, etc...).
DOI: 10.18130/v3/runata
title: Conic Sections

description: This is a model of conic slices that is obtained through reverse-engineering parts of a cone, with its dimensions determined by its isosceles triangular frame and the angle of the cross-sectional slices.
description: All conic sections are defined by the relationship of their locus of points to fixed points
known as foci. Ellipses arise from a locus of points that represent a constant sum of distances from two fixed points (foci). Hyperbolas arise from a locus of points that represent a constant absolute value of difference of distances from two fixed points (foci).
DOI: 10.18130/v3/3vdudi
title: Decimal Snake

description: The body of the Decimal Snake consists of 10 pieces. Each piece is equally partitioned into 10 parts. Once the “whole” of the Decimal Snake is designated, then each body part represents one-tenth of that whole, and each partition of a body part represents one-tenth of one-tenth (or one-hundredth) of that whole.
description: The Decimal Snake is useful for teaching the part-whole meaning of fractions, the number-line representation of fractions, and writing decimals to thousandths in multiple forms.
DOI: 10.18130/v3/6wm2qn
title: :unav

description: :unav
DOI: 10.18130/v3/7fcwqg
title: Andrea Testing 6/12 Release

description: new n/a data
DOI: 10.18130/v3/n0h1va
title: Stroke Analysis Export Jan 27, 2022

description: This report was created for use in poster and manuscript. Contents are not restricted and can be publicly shared at the discretion of the study PI (Andy Southerland). This export supports this manuscript: https://doi.org/10.1016/j.jstrokecerebrovasdis.2023.106987.
DOI: 10.18130/v3/014tlc
title: Replication Data for: Specific Cryptosporidium antigens associate with reinfection immunity and protection from cryptosporidiosis

description: There is no vaccine to protect from cryptosporidiosis, a leading cause of diarrhea in infants in low and middle income countries. Here we comprehensively identified parasite antigens associated with protection from reinfection. A Cryptosporidium protein microarray was constructed by in vitro transcription and translation of 1761 C. parvum, C. hominis or C. meleagridis antigens, including proteins with a signal peptide and/or a transmembrane domain. Plasma IgG and/or IgA from Bangladeshi children longitudinally followed for cryptosporidiosis from birth to three years of age, identified 233 seroreactive proteins. Seven of these were associated with protection from reinfection. These included Cp23 and Cp17, Gp900 and four additional antigens (CpSMP1, CpMuc8, CpCorA and CpCCDC1). Infection in the first year of life however often resulted in no detectable antigen-specific antibody response, and antibody responses, when detected, were (i) specific to the infecting parasite genotype, and (ii) decayed in the months post-infection. In conclusion humoral immune responses against specific parasite antigens were associated with acquired immunity. While antibody decay over time and parasite genotype-specificity may limit natural immunity, this work serves as a foundation for antigen selection for vaccine design.
DOI: 10.18130/v3/ucjogl
title: Testing the Efficacy of Double Check: A Cultural Proficiency Professional Development Model in Middle Schools

description: Data from a school-level randomized controlled trial (RCT) of the Double Check professional development model, focused on improving teachers' cultural responsivity and student engagement. Data were developed to evaluate the multi-component whole-school Double Check model, testing the combined impacts of school-wide data-based decision-making, along with staff professional development on culturally responsive practices, and classroom coaching using the Double Check version of the Classroom Check-up. Detailed descriptions of this model and intervention activities can be found in Bradshaw et al (2018; a description of the model from a prior trial) and Pas et al (2022; analysis of intervention activities from the present trial). 

A total of 41 middle school from two states in the mid-Atlantic region of the United States participated. Schools were recruited to participate in four cohorts. The first school-years of participation for these cohorts were 2015-2016, 2016-2017, 2017-2018, and 2018-2019, respectively. Teacher recruitment sessions were generally held in the weeks leading up to beginning of the school year (during faculty professional development days). A total of 352 teachers consented to participate in the RCT. 

Following Fall baseline data collection for each of the four cohorts, schools were randomly assigned to receive the Double Check model (n = 19) or to the comparison group (n = 22; i.e., business as usual). Recruited schools were assigned into paired matches within their cohort based on their school-level demographic characteristics and baseline data; one school in each pair was randomly assigned to each group to ensure balance across conditions. Intervention activities took place during the first year of each school's participation in the trial. During year 2, intervention schools also received two professional development “booster” sessions. These sessions reviewed the Double Check model and components of culturally responsive teaching, and facilitated action planning for the second academic year for teachers’ implementation of culturally responsive strategies.

Data collection occurred at baseline (pre-test; Fall of year 1), post-test (Spring of year 1), and follow-up (Spring of year 2). 

Data from all cohorts and time points are included in this submission. Follow-up data are missing for the fourth cohort of schools, as their follow-up time point coincided with Spring of 2020, when the COVID-19 pandemic interfered with data collection within schools. 

At the completion of the two years of participation (one intervention year, one follow up year for data collection), comparison schools received all Double Check PD materials and individual staff members received training in the coaching model.
DOI: 10.18130/v3/z5vbn3
title: Social Data Commons: Education

description: Datasets and code for the Social Impact Data Commons Education data area.
DOI: 10.18130/v3/dfqzhi
title: Social Data Commons: Financial Well Being

description: Datasets and code for the Social Impact Data Commons Financial Well Being data area.
DOI: 10.18130/v3/rosmfa
title: Social Data Commons: Broadband

description: Datasets and code for the Social Impact Data Commons Broadband data area.
DOI: 10.18130/v3/kofcda
title: Social Data Commons: Food

description: Datasets and code for the Social Impact Data Commons Food data area.
DOI: 10.18130/v3/7ueffm
title: Social Data Commons: Health

description: Datasets and code for the Social Impact Data Commons Health data area.
DOI: 10.18130/v3/ql1nkb
title: Social Data Commons: Demographics

description: Datasets and code for the Social Impact Data Commons Demographics data area.
DOI: 10.18130/v3/jzjidl
title: Social Data Commons: Environment

description: Datasets and code for the Social Impact Data Commons Environment data area.
DOI: 10.18130/v3/xhcqek
title: Social Data Commons: Transportation

description: Datasets and code for the Social Impact Data Commons Transportation data area.
DOI: 10.18130/v3/2zmfxs
title: Social Data Commons: Housing

description: Datasets and code for the Social Impact Data Commons Housing data area.
DOI: 10.18130/v3/eoetck
title: :unav

description: :unav
DOI: 10.18130/v3/5urlec
title: Ecstasy / Light / Inertia - Final Build

description: Final build with an executable (compressed in .RAR) for Ecstasy / Light / Inertia, a 3d virtual exploration into the realm of gamified music experiences. Serves as a supplement for the dissertation project "Ecstasy / Light / Inertia: Interactive Gamification for New Electroacoustic Music and Sound Art". Tested compatibility for Windows 8.1 and Windows 10/11 (64-bit versions only).

This dataset also includes a full 'playthrough' of the experience in video format.
DOI: 10.18130/v3/9vxaz7
title: R script files that are referred to in Unbiased Sampling and Volume-Sorting of Origin-Specific Terminals Using SBEM Image Stacks by Erisir, Briegel, Maher, and Sciaccotta, 202

description: This dataset contains R Script files used in the Volumetric Sorting method described in Erisir et al., 202x [citation in progress]. A sample data file and a README file are also included. MClust_Volume_Sorting.R organizes a data file that is similar in structure to the sample file and runs mclust analysis to identify terminal subpopulations, the volumes of which are measured via 3D reconstructions using Scanning Blockface Electron Microscopy image stacks. MonteCarlo_VolumeSortingCutoffs.R simulates the subpopulation parameters to identify generalizable cutoff volumes.
DOI: 10.18130/v3/zgs4t4
title: HEvOD: Hurricane Evacuation Order Database

description: The Hurricane Evacuation Order Database (HEvOD) is a detailed collection of official evacuation orders issued in response to the hurricanes that impacted the United States between 2014-2022. It is compiled from a wide range of sources including official websites and social media accounts of state and local governments and government agencies, as well as news outlets. Key details pertaining to each evacuation order include the order type (mandatory, voluntary, State of Emergency), the announcement date/time of the order, the effective date/time of the order, and the evacuation areas targeted by the order.
DOI: 10.18130/v3/lj9pb2
title: Trigonometry Angle Formulas

description: Making sense of trigonometric identities; To help students derive and thus make
sense of the trig identities, sin (a + b) and cos (a + b).
description: The Trigonometry Angle Formulas comprises four right-angled triangles of different dimensions that are joined to form a rectangle. The inscribed triangle is a right angle that touches all four sides. By labeling the sides of the inscribed triangle in terms of the sine and cosine of its acute angles, and by using the fact that the opposite sides of a rectangle have equal measure, students can find values for the trig identities sin (a + b) and cos (a + b). Thus, the tool allows students to make sense of trig identities that are often taught without meaning or derivation.