cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3559089.v1
title: Supplement 2. R code for data summary models, estimating experimental effects with mixed effects models, and fitting alternative distributions for the tail probabilities of extinction time.

description: File List pulicaria-code.R (MD5: 907cfa2626421dc29c58eebfb0c38329) Description The file pulicaria-code.R (298 lines) contains R code for all analyses included in the main text and supplement. Requires data.csv and depends on R packages moments, xtable, MIfuns, lme4, and external R code for fitting power law distributions written by Cosma Shalizi and hosted by the Santa Fe Institute at http://tuvalu.santafe.edu/~aaronc/powerlaws/.<br>
DOI: 10.6084/m9.figshare.3559086
title: Supplement 1. R code for simulations of random walks and data analysis using power spectra and first digit.

description: File List RW_PS_FD.R (md5: ca6d3ce51e1eed1646ce007e29c8e775) Description RW_PS_FD.R - R code for running simulations of random walks and corresponding data analysis using power spectra and first digit, including annotated comments and relevant description.
DOI: 10.6084/m9.figshare.3559086.v1
title: Supplement 1. R code for simulations of random walks and data analysis using power spectra and first digit.

description: File List RW_PS_FD.R (md5: ca6d3ce51e1eed1646ce007e29c8e775) Description RW_PS_FD.R - R code for running simulations of random walks and corresponding data analysis using power spectra and first digit, including annotated comments and relevant description.
DOI: 10.6084/m9.figshare.3559083
title: Appendix A. Methods to quantify abundance of mycorrhizal hyphae.

description: Methods to quantify abundance of mycorrhizal hyphae.
DOI: 10.6084/m9.figshare.3559083.v1
title: Appendix A. Methods to quantify abundance of mycorrhizal hyphae.

description: Methods to quantify abundance of mycorrhizal hyphae.
DOI: 10.6084/m9.figshare.3559080
title: Appendix B. Composition and abundance of secondary tree species.

description: Composition and abundance of secondary tree species.
DOI: 10.6084/m9.figshare.3559080.v1
title: Appendix B. Composition and abundance of secondary tree species.

description: Composition and abundance of secondary tree species.
DOI: 10.6084/m9.figshare.3559077
title: Appendix C. A table presenting sporocarp species recovered in 2012 survey.

description: A table presenting sporocarp species recovered in 2012 survey.
DOI: 10.6084/m9.figshare.3559074
title: Appendix D. Species accumulation curves for sporocarp surveys.

description: Species accumulation curves for sporocarp surveys.
DOI: 10.6084/m9.figshare.3559074.v1
title: Appendix D. Species accumulation curves for sporocarp surveys.

description: Species accumulation curves for sporocarp surveys.
DOI: 10.6084/m9.figshare.3559071
title: Appendix E. Initial stand productivity of study sites.

description: Initial stand productivity of study sites.
DOI: 10.6084/m9.figshare.3559071.v1
title: Appendix E. Initial stand productivity of study sites.

description: Initial stand productivity of study sites.
DOI: 10.6084/m9.figshare.3559068
title: Appendix F. Linear regression of relationship between hyphal length and lodgepole pine killed by mountain pine beetle.

description: Linear regression of relationship between hyphal length and lodgepole pine killed by mountain pine beetle.
DOI: 10.6084/m9.figshare.3559068.v1
title: Appendix F. Linear regression of relationship between hyphal length and lodgepole pine killed by mountain pine beetle.

description: Linear regression of relationship between hyphal length and lodgepole pine killed by mountain pine beetle.
DOI: 10.6084/m9.figshare.3559065
title: Appendix A. Proof that regressing individuals’ reproductive values on vital rates yields Hamilton’s sensitivities.

description: Proof that regressing individuals’ reproductive values on vital rates yields Hamilton’s sensitivities.
DOI: 10.6084/m9.figshare.3559065.v1
title: Appendix A. Proof that regressing individuals’ reproductive values on vital rates yields Hamilton’s sensitivities.

description: Proof that regressing individuals’ reproductive values on vital rates yields Hamilton’s sensitivities.
DOI: 10.6084/m9.figshare.3559062
title: Appendix A. Table presenting the effects of time and state on detection probability (p), and of state on the probabilities of survival (S), breeding (β), breeding successfully (γ), and successfully raising two chicks (δ) in South Polar Skuas and Brown Skuas.

description: Table presenting the effects of time and state on detection probability (p), and of state on the probabilities of survival (S), breeding (β), breeding successfully (γ), and successfully raising two chicks (δ) in South Polar Skuas and Brown Skuas.
DOI: 10.6084/m9.figshare.3559059
title: Appendix A. Statistical tables of predation on insects and effects on herbivory and figures that show insect abundances and herbivory prior to the experiment, sticky trap samples by order, and changes in leaf damage.

description: Statistical tables of predation on insects and effects on herbivory and figures that show insect abundances and herbivory prior to the experiment, sticky trap samples by order, and changes in leaf damage.
DOI: 10.6084/m9.figshare.3559056
title: Appendix A. A figure showing the paddock arrangement and experimental layout.

description: A figure showing the paddock arrangement and experimental layout.
DOI: 10.6084/m9.figshare.3559056.v1
title: Appendix A. A figure showing the paddock arrangement and experimental layout.

description: A figure showing the paddock arrangement and experimental layout.
DOI: 10.6084/m9.figshare.3559053
title: Appendix B. A table showing the initial vegetation characteristics and understory light availability among the four types of plots in August 2011.

description: A table showing the initial vegetation characteristics and understory light availability among the four types of plots in August 2011.
DOI: 10.6084/m9.figshare.3559053.v1
title: Appendix B. A table showing the initial vegetation characteristics and understory light availability among the four types of plots in August 2011.

description: A table showing the initial vegetation characteristics and understory light availability among the four types of plots in August 2011.
DOI: 10.6084/m9.figshare.3559050
title: Appendix A. Supplemental methods, results, ANOVA tables and discussion.

description: Supplemental methods, results, ANOVA tables and discussion.
DOI: 10.6084/m9.figshare.3559047
title: Appendix B. Correlation matrix between several response variables.

description: Correlation matrix between several response variables.
DOI: 10.6084/m9.figshare.3559047.v1
title: Appendix B. Correlation matrix between several response variables.

description: Correlation matrix between several response variables.
DOI: 10.6084/m9.figshare.3559044
title: Appendix A. Experimental design, fitness estimations, and parameter estimations.

description: Experimental design, fitness estimations, and parameter estimations.
DOI: 10.6084/m9.figshare.3559044.v1
title: Appendix A. Experimental design, fitness estimations, and parameter estimations.

description: Experimental design, fitness estimations, and parameter estimations.
DOI: 10.6084/m9.figshare.3559041
title: Appendix B. Fitness estimations.

description: Fitness estimations.
DOI: 10.6084/m9.figshare.3559041.v1
title: Appendix B. Fitness estimations.

description: Fitness estimations.
DOI: 10.6084/m9.figshare.3559038
title: Appendix C. Parameter estimates of treatments in Red Grouse survival.

description: Parameter estimates of treatments in Red Grouse survival.
DOI: 10.6084/m9.figshare.3559038.v1
title: Appendix C. Parameter estimates of treatments in Red Grouse survival.

description: Parameter estimates of treatments in Red Grouse survival.
DOI: 10.6084/m9.figshare.3559035
title: Appendix A. Sensitivity to dispersal kernel shape.

description: Sensitivity to dispersal kernel shape.
DOI: 10.6084/m9.figshare.3559035.v1
title: Appendix A. Sensitivity to dispersal kernel shape.

description: Sensitivity to dispersal kernel shape.
DOI: 10.6084/m9.figshare.3559032
title: Appendix B. Numerical solution method.

description: Numerical solution method.
DOI: 10.6084/m9.figshare.3559032.v1
title: Appendix B. Numerical solution method.

description: Numerical solution method.
DOI: 10.6084/m9.figshare.3559029
title: Appendix C. Reconciling Vance (1973a, b) and Levitan (2000).

description: Reconciling Vance (1973a, b) and Levitan (2000).
DOI: 10.6084/m9.figshare.3559029.v1
title: Appendix C. Reconciling Vance (1973a, b) and Levitan (2000).

description: Reconciling Vance (1973a, b) and Levitan (2000).
DOI: 10.5281/zenodo.3905399
title: Data and R code for The Finer Points of Urban Adaptation: Intraspecific Variation in Lizard Claw Morphology (2020; Biological Journal of the Linnean Society)

description: This zip file contains all data (tps files, Rdata, csv) and annotated R script to conduct all analyses presented in Falvey et al. (2020, BJLS), which examines claw morphology in 5 species of anole lizards using geometric morphometrics.
description: Contact Kristin Winchell for questions regarding this dataset (kmwinchell@gmail.com)
DOI: 10.6084/m9.figshare.3559026
title: Appendix D. Details of comparison of theory to observed life-history distribution.

description: Details of comparison of theory to observed life-history distribution.
DOI: 10.5281/zenodo.3905398
title: Data and R code for The Finer Points of Urban Adaptation: Intraspecific Variation in Lizard Claw Morphology (2020; Biological Journal of the Linnean Society)

description: This zip file contains all data (tps files, Rdata, csv) and annotated R script to conduct all analyses presented in Falvey et al. (2020, BJLS), which examines claw morphology in 5 species of anole lizards using geometric morphometrics.
description: Contact Kristin Winchell for questions regarding this dataset (kmwinchell@gmail.com)
DOI: 10.6084/m9.figshare.3559026.v1
title: Appendix D. Details of comparison of theory to observed life-history distribution.

description: Details of comparison of theory to observed life-history distribution.
DOI: 10.6084/m9.figshare.3559023
title: Appendix E. Variation of larval growth g with temperature.

description: Variation of larval growth g with temperature.
DOI: 10.6084/m9.figshare.3559023.v1
title: Appendix E. Variation of larval growth g with temperature.

description: Variation of larval growth g with temperature.
DOI: 10.6084/m9.figshare.3559020
title: Appendix A. Tables showing the number and proportion of species captured on roofs and the ground and the results of the redundancy analysis (RDA) and variation partitioning analyses.

description: Tables showing the number and proportion of species captured on roofs and the ground and the results of the redundancy analysis (RDA) and variation partitioning analyses.
DOI: 10.6084/m9.figshare.3559020.v1
title: Appendix A. Tables showing the number and proportion of species captured on roofs and the ground and the results of the redundancy analysis (RDA) and variation partitioning analyses.

description: Tables showing the number and proportion of species captured on roofs and the ground and the results of the redundancy analysis (RDA) and variation partitioning analyses.
DOI: 10.6084/m9.figshare.3559017
title: Appendix A. The six functional traits and 19 character states used to characterize coral taxa recorded in our surveys of high-latitude coral communities of eastern Australia.

description: The six functional traits and 19 character states used to characterize coral taxa recorded in our surveys of high-latitude coral communities of eastern Australia.
DOI: 10.6084/m9.figshare.3559014
title: Appendix B. The coral life-history framework by Darling et al. (2012) applied to high-latitude coral communities of eastern Australia.

description: The coral life-history framework by Darling et al. (2012) applied to high-latitude coral communities of eastern Australia.
DOI: 10.6084/m9.figshare.3559011
title: Appendix C. Zoogeography of the coral taxa recorded in surveys.

description: Zoogeography of the coral taxa recorded in surveys.
DOI: 10.6084/m9.figshare.3559011.v1
title: Appendix C. Zoogeography of the coral taxa recorded in surveys.

description: Zoogeography of the coral taxa recorded in surveys.
DOI: 10.6084/m9.figshare.3559008
title: Appendix D. Coral distribution and abundance at eastern Australian high-latitude reefs.

description: Coral distribution and abundance at eastern Australian high-latitude reefs.
DOI: 10.6084/m9.figshare.3559008.v1
title: Appendix D. Coral distribution and abundance at eastern Australian high-latitude reefs.

description: Coral distribution and abundance at eastern Australian high-latitude reefs.
DOI: 10.6084/m9.figshare.3559005
title: Appendix E. Similarity profiles of coral species abundance distributions along a latitudinal gradient in subtropical eastern Australia.

description: Similarity profiles of coral species abundance distributions along a latitudinal gradient in subtropical eastern Australia.
DOI: 10.6084/m9.figshare.3559005.v1
title: Appendix E. Similarity profiles of coral species abundance distributions along a latitudinal gradient in subtropical eastern Australia.

description: Similarity profiles of coral species abundance distributions along a latitudinal gradient in subtropical eastern Australia.
DOI: 10.6084/m9.figshare.3559002
title: Appendix A. Data used in calculating the reported results for 48 species of trees and treelets at Cocha Cashu Biological Station in Peru.

description: Data used in calculating the reported results for 48 species of trees and treelets at Cocha Cashu Biological Station in Peru.
DOI: 10.6084/m9.figshare.3559002.v1
title: Appendix A. Data used in calculating the reported results for 48 species of trees and treelets at Cocha Cashu Biological Station in Peru.

description: Data used in calculating the reported results for 48 species of trees and treelets at Cocha Cashu Biological Station in Peru.
DOI: 10.6084/m9.figshare.3558999
title: Appendix A. Additional information on functional traits, distribution, sampling, and phylogeny of Ficus species on our study plot.

description: Additional information on functional traits, distribution, sampling, and phylogeny of Ficus species on our study plot.
DOI: 10.6084/m9.figshare.3558999.v1
title: Appendix A. Additional information on functional traits, distribution, sampling, and phylogeny of Ficus species on our study plot.

description: Additional information on functional traits, distribution, sampling, and phylogeny of Ficus species on our study plot.
DOI: 10.6084/m9.figshare.3558996
title: Appendix A. Residual effects of past land use on current litter, organic soil, and mineral soil layer properties, as revealed by univariate and multivariate ANOVA.

description: Residual effects of past land use on current litter, organic soil, and mineral soil layer properties, as revealed by univariate and multivariate ANOVA.
DOI: 10.6084/m9.figshare.3558996.v1
title: Appendix A. Residual effects of past land use on current litter, organic soil, and mineral soil layer properties, as revealed by univariate and multivariate ANOVA.

description: Residual effects of past land use on current litter, organic soil, and mineral soil layer properties, as revealed by univariate and multivariate ANOVA.
DOI: 10.6084/m9.figshare.3558993
title: Appendix B. Residual effects of past land use on current ecosystem properties, vegetation composition, and productivity, as revealed by univariate ANOVA.

description: Residual effects of past land use on current ecosystem properties, vegetation composition, and productivity, as revealed by univariate ANOVA.
DOI: 10.6084/m9.figshare.3558993.v1
title: Appendix B. Residual effects of past land use on current ecosystem properties, vegetation composition, and productivity, as revealed by univariate ANOVA.

description: Residual effects of past land use on current ecosystem properties, vegetation composition, and productivity, as revealed by univariate ANOVA.
DOI: 10.6084/m9.figshare.3558990
title: Appendix C. Residual effects of past land use on current vegetation nutrient concentrations and resorption, as revealed by univariate ANOVA.

description: Residual effects of past land use on current vegetation nutrient concentrations and resorption, as revealed by univariate ANOVA.
DOI: 10.6084/m9.figshare.3558990.v1
title: Appendix C. Residual effects of past land use on current vegetation nutrient concentrations and resorption, as revealed by univariate ANOVA.

description: Residual effects of past land use on current vegetation nutrient concentrations and resorption, as revealed by univariate ANOVA.
DOI: 10.6084/m9.figshare.3558987
title: Appendix D. Relationships between “soil fertility” and environmental variables related to vegetation composition, productivity, and nutrient concentrations and resorption.

description: Relationships between “soil fertility” and environmental variables related to vegetation composition, productivity, and nutrient concentrations and resorption.
DOI: 10.6084/m9.figshare.3558987.v1
title: Appendix D. Relationships between “soil fertility” and environmental variables related to vegetation composition, productivity, and nutrient concentrations and resorption.

description: Relationships between “soil fertility” and environmental variables related to vegetation composition, productivity, and nutrient concentrations and resorption.
DOI: 10.6084/m9.figshare.3558984
title: Appendix A. Additional details on study site, species, and sampling protocol.

description: Additional details on study site, species, and sampling protocol.
DOI: 10.6084/m9.figshare.3558984.v1
title: Appendix A. Additional details on study site, species, and sampling protocol.

description: Additional details on study site, species, and sampling protocol.
DOI: 10.6084/m9.figshare.3558981
title: Appendix B. Additional details on statistical methods.

description: Additional details on statistical methods.
DOI: 10.6084/m9.figshare.3558981.v1
title: Appendix B. Additional details on statistical methods.

description: Additional details on statistical methods.
DOI: 10.6084/m9.figshare.3558978
title: Appendix A. Tests of phylogenetic signal in functional traits and summary of model-fitting procedure.

description: Tests of phylogenetic signal in functional traits and summary of model-fitting procedure.
DOI: 10.6084/m9.figshare.3558975
title: Appendix A. Sampling information for each tree-ring site.

description: Sampling information for each tree-ring site.
DOI: 10.6084/m9.figshare.3558972
title: Appendix B. Results from Mann-Whitney U tests comparing climate conditions during outbreaks and non-outbreak years.

description: Results from Mann-Whitney U tests comparing climate conditions during outbreaks and non-outbreak years.
DOI: 10.6084/m9.figshare.3558972.v1
title: Appendix B. Results from Mann-Whitney U tests comparing climate conditions during outbreaks and non-outbreak years.

description: Results from Mann-Whitney U tests comparing climate conditions during outbreaks and non-outbreak years.
DOI: 10.6084/m9.figshare.3558969
title: Appendix A. A table of recruitment function parameter comparisons across habitats and cohorts after four years, a map of the study area in South Island, New Zealand, and a figure showing seedling recruitment and subsequent mortality over time in each of the six habitats.

description: A table of recruitment function parameter comparisons across habitats and cohorts after four years, a map of the study area in South Island, New Zealand, and a figure showing seedling recruitment and subsequent mortality over time in each of the six habitats.
DOI: 10.6084/m9.figshare.3558969.v1
title: Appendix A. A table of recruitment function parameter comparisons across habitats and cohorts after four years, a map of the study area in South Island, New Zealand, and a figure showing seedling recruitment and subsequent mortality over time in each of the six habitats.

description: A table of recruitment function parameter comparisons across habitats and cohorts after four years, a map of the study area in South Island, New Zealand, and a figure showing seedling recruitment and subsequent mortality over time in each of the six habitats.
DOI: 10.6084/m9.figshare.3558966
title: Appendix A. A figure showing the observed distribution of surrounding focal plants at four scales.

description: A figure showing the observed distribution of surrounding focal plants at four scales.
DOI: 10.6084/m9.figshare.3558966.v1
title: Appendix A. A figure showing the observed distribution of surrounding focal plants at four scales.

description: A figure showing the observed distribution of surrounding focal plants at four scales.
DOI: 10.6084/m9.figshare.3558963
title: Appendix B. A figure showing the observed distribution of female and male flowers surrounding a focal plant (with at least one receptive female flower) across 10 census dates at four scales.

description: A figure showing the observed distribution of female and male flowers surrounding a focal plant (with at least one receptive female flower) across 10 census dates at four scales.
DOI: 10.6084/m9.figshare.3558963.v1
title: Appendix B. A figure showing the observed distribution of female and male flowers surrounding a focal plant (with at least one receptive female flower) across 10 census dates at four scales.

description: A figure showing the observed distribution of female and male flowers surrounding a focal plant (with at least one receptive female flower) across 10 census dates at four scales.
DOI: 10.6084/m9.figshare.3558960
title: Appendix A. Mathematical derivation of the generalized MTE model.

description: Mathematical derivation of the generalized MTE model.
DOI: 10.6084/m9.figshare.3558960.v1
title: Appendix A. Mathematical derivation of the generalized MTE model.

description: Mathematical derivation of the generalized MTE model.
DOI: 10.6084/m9.figshare.3558957
title: Appendix B. Incorporating size-dependent transfer efficiency in the generalized MTE model.

description: Incorporating size-dependent transfer efficiency in the generalized MTE model.
DOI: 10.6084/m9.figshare.3558957.v1
title: Appendix B. Incorporating size-dependent transfer efficiency in the generalized MTE model.

description: Incorporating size-dependent transfer efficiency in the generalized MTE model.
DOI: 10.6084/m9.figshare.3558954
title: Appendix C. Statistical arguments for the two-step fitting procedure to extract secondary structure of ISD.

description: Statistical arguments for the two-step fitting procedure to extract secondary structure of ISD.
DOI: 10.6084/m9.figshare.3558954.v1
title: Appendix C. Statistical arguments for the two-step fitting procedure to extract secondary structure of ISD.

description: Statistical arguments for the two-step fitting procedure to extract secondary structure of ISD.
DOI: 10.6084/m9.figshare.3558951
title: Appendix D. The taxonomical composition of each size fraction.

description: The taxonomical composition of each size fraction.
DOI: 10.6084/m9.figshare.3558951.v1
title: Appendix D. The taxonomical composition of each size fraction.

description: The taxonomical composition of each size fraction.
DOI: 10.6084/m9.figshare.3558948
title: Appendix E. The distribution of different K-means groups in time.

description: The distribution of different K-means groups in time.
DOI: 10.6084/m9.figshare.3558948.v1
title: Appendix E. The distribution of different K-means groups in time.

description: The distribution of different K-means groups in time.
DOI: 10.6084/m9.figshare.3558945
title: Appendix F. Criteria to select the cubic polynomial function.

description: Criteria to select the cubic polynomial function.
DOI: 10.6084/m9.figshare.3558945.v1
title: Appendix F. Criteria to select the cubic polynomial function.

description: Criteria to select the cubic polynomial function.
DOI: 10.6084/m9.figshare.3558942
title: Appendix G. Time-integrated secondary structure of ISD over season.

description: Time-integrated secondary structure of ISD over season.
DOI: 10.6084/m9.figshare.3558942.v1
title: Appendix G. Time-integrated secondary structure of ISD over season.

description: Time-integrated secondary structure of ISD over season.