cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11637768.v1
title: DATA_Husk_Fragmentation_GS65.csv

description: Raw data for the husk fragmentation experiment - samples from GS 65<br>
DOI: 10.6084/m9.figshare.11637765
title: DATA_Husk_Structure_GS77.csv

description: Raw data for the husk structure samples from GS 77
DOI: 10.6084/m9.figshare.11637765.v1
title: DATA_Husk_Structure_GS77.csv

description: Raw data for the husk structure samples from GS 77
DOI: 10.25625/fohujm/skwp36
title: 254.pts

description: :unav
DOI: 10.25625/fohujm/gkl6bb
title: 130.pts

description: :unav
DOI: 10.25625/fohujm/ybruwy
title: 35_68.txt

description: :unav
DOI: 10.25625/fohujm/dmwcj3
title: 65_50.txt

description: :unav
DOI: 10.25625/fohujm/38eghj
title: 65_14.txt

description: :unav
DOI: 10.25625/fohujm/3n1bjh
title: 64_19.txt

description: :unav
DOI: 10.25625/fohujm/zwdbei
title: Jerome_Bu1_HEW29.xyz

description: :unav
DOI: 10.25625/fohujm/pybyku
title: 65_86.txt

description: :unav
DOI: 10.25625/fohujm/6opa9o
title: 31_71.txt

description: :unav
DOI: 10.25625/fohujm/yobrsu
title: 31_56.txt

description: :unav
DOI: 10.6084/m9.figshare.11637744
title: DATA_Husk_Structure_GS65.csv

description: Raw data for the husk structure samples from GS 65<br>
DOI: 10.25625/fohujm/yzksms
title: 36.pts

description: :unav
DOI: 10.25625/fohujm/nond2z
title: Tree20_Interior.xyz

description: :unav
DOI: 10.25625/fohujm/ll6olv
title: Jerome_Bu28_HEW29.xyz

description: :unav
DOI: 10.25625/fohujm/e2ugsy
title: 186.pts

description: :unav
DOI: 10.25625/fohujm/il23jg
title: 65_26.txt

description: :unav
DOI: 10.25625/fohujm/fvwxne
title: Jerome_Bu5_SEW8.xyz

description: :unav
DOI: 10.25625/fohujm/fczx7b
title: Jerome_Bu43_SEW8.xyz

description: :unav
DOI: 10.25625/fohujm/n9ltka
title: 31_85.txt

description: :unav
DOI: 10.25625/fohujm/krlnzn
title: 64_6.txt

description: :unav
DOI: 10.25625/fohujm/trc4fd
title: 31_46.txt

description: :unav
DOI: 10.25625/fohujm/yi3mza
title: 31_29.txt

description: :unav
DOI: 10.25625/fohujm/g8ckst
title: 35_97.txt

description: :unav
DOI: 10.25625/fohujm/34tnjm
title: Jerome_Bu8_HEW21.xyz

description: :unav
DOI: 10.25625/fohujm/dsqu9e
title: Jerome_Fi41_AEW34.xyz

description: :unav
DOI: 10.25625/fohujm/ivg7te
title: E1.xyz

description: :unav
DOI: 10.25625/fohujm/chnuyd
title: 62_37_15.txt

description: :unav
DOI: 10.25625/fohujm/jnaowx
title: 62_93.txt

description: :unav
DOI: 10.25625/fohujm/toezg6
title: 183.pts

description: :unav
DOI: 10.25625/fohujm/khcchc
title: 61_35.txt

description: :unav
DOI: 10.25625/fohujm/vvfjgj
title: 61_80.txt

description: :unav
DOI: 10.25625/fohujm/xt6cl7
title: Tree14_Border.xyz

description: :unav
DOI: 10.25625/fohujm/8mqwgd
title: 35_60.txt

description: :unav
DOI: 10.25625/fohujm/yersba
title: Jerome_Bu41_SEW4.xyz

description: :unav
DOI: 10.25625/fohujm/e105eh
title: 131.pts

description: :unav
DOI: 10.25625/fohujm/zxhdqp
title: Jerome_Bu10_HEW29.xyz

description: :unav
DOI: 10.25625/fohujm/buzeot
title: 110.pts

description: :unav
DOI: 10.25625/fohujm/jxwtzg
title: 61_34.txt

description: :unav
DOI: 10.6084/m9.figshare.13346598
title: Additional file 3 of Proteomic signatures of 16 major types of human cancer reveal universal and cancer-type-specific proteins for the identification of potential therapeutic targets

description: Additional file 3: Table S2. Protein expression profiling used for all the downstream analyses.
DOI: 10.6084/m9.figshare.9692150
title: Additional file 1: of Early prediction of preeclampsia and small-for-gestational-age via multi-marker model in Chinese pregnancies: a prospective screening study

description: Study data. This data sheet includes the testing results of markers and prediction values of PE by PREDITCTOR software of all the participants in this study. (XLS 1417 kb)
DOI: 10.6084/m9.figshare.13346610
title: Additional file 7 of Proteomic signatures of 16 major types of human cancer reveal universal and cancer-type-specific proteins for the identification of potential therapeutic targets

description: Additional file 7: Table S6. Cancer drug targets related to Fig. 6 and Figure S6.
DOI: 10.6084/m9.figshare.9692150.v1
title: Additional file 1: of Early prediction of preeclampsia and small-for-gestational-age via multi-marker model in Chinese pregnancies: a prospective screening study

description: Study data. This data sheet includes the testing results of markers and prediction values of PE by PREDITCTOR software of all the participants in this study. (XLS 1417 kb)
DOI: 10.6084/m9.figshare.13346607
title: Additional file 6 of Proteomic signatures of 16 major types of human cancer reveal universal and cancer-type-specific proteins for the identification of potential therapeutic targets

description: Additional file 6: Table S5. Cancer-associated proteins related to Fig. 4, Fig. 5, Figure S4, and Figure S5.
DOI: 10.6084/m9.figshare.13346598.v1
title: Additional file 3 of Proteomic signatures of 16 major types of human cancer reveal universal and cancer-type-specific proteins for the identification of potential therapeutic targets

description: Additional file 3: Table S2. Protein expression profiling used for all the downstream analyses.
DOI: 10.6084/m9.figshare.7070780
title: Additional file 5: of Quantification of variation and the impact of biomass in targeted 16S rRNA gene sequencing studies

description: Table S2. Coefficient of variation (CV) values for individual bacteria taxa in the bacterial mock community samples measured across 16 sequencing runs. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.9692279
title: Additional file 5: of New perspectives on the plant PARP family: Arabidopsis PARP3 is inactive, and PARP1 exhibits predominant poly (ADP-ribose) polymerase activity in response to DNA damage

description: Table S1 Source data of seedling fresh weight and chlorophyll content under genotoxin treatment. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.9692279.v1
title: Additional file 5: of New perspectives on the plant PARP family: Arabidopsis PARP3 is inactive, and PARP1 exhibits predominant poly (ADP-ribose) polymerase activity in response to DNA damage

description: Table S1 Source data of seedling fresh weight and chlorophyll content under genotoxin treatment. (XLSX 32 kb)
DOI: 10.15139/s3/r1ndxu
title: Farmworker Stock Photo Representation Project

description: This project aimed to examine representation of agricultural workers, specifically migrant and seasonal farmworkers, in stock photo libraries.
DOI: 10.6084/m9.figshare.7070981
title: Additional file 3: of Weipixiao attenuate early angiogenesis in rats with gastric precancerous lesions

description: HIF-1alpha (IHC-IOD). Raw data for Fig.Â 7. (XLS 21 kb)
DOI: 10.6084/m9.figshare.7071062
title: Additional file 7: of Weipixiao attenuate early angiogenesis in rats with gastric precancerous lesions

description: Cyclin-D1(PCR). Raw data for Fig.Â 9. (XLS 27 kb)
DOI: 10.6084/m9.figshare.7071062.v1
title: Additional file 7: of Weipixiao attenuate early angiogenesis in rats with gastric precancerous lesions

description: Cyclin-D1(PCR). Raw data for Fig.Â 9. (XLS 27 kb)
DOI: 10.6084/m9.figshare.14935439
title: Morphological and molecular characterization of the new aethaloid species <i>Didymium yulii</i>

description: Five specimens, initially presumed to be <i>Fuligo septica</i> or <i>Mucilago crustacea</i>, were collected from Jilin Province and the Inner Mongolia Autonomous Region in China, but all five turned out to represent a new aethaloid species, <i>Didymium yulii</i>. This new species is characterized by pseudocapillitia without capillitia and an aethalioid fruiting body, features that are morphologically distinct from those of any other species of <i>Didymium</i>. To assess the phylogenetic relationships between <i>D. yulii</i> and other members of <i>Didymium</i> and in the Didymiaceae, sequences from two nonoverlapping targeted portions of nuc 18S rDNA (~450 bp and ~1050 bp) and translation elongation factor 1-alpha (<i>tef1</i>) were obtained and analyzed. The results indicate that <i>D. yulii</i> forms a single clade separate from other species of <i>Didymium</i> and the clade that contains <i>M. crustacea</i>, which strongly supports the identification of the five specimens as a new species.
DOI: 10.6084/m9.figshare.14935474
title: <i>Leptosphaerulina</i> species isolated from golf turfgrass in China, with description of <i>L. macrospora</i>, sp. nov.

description: Leptosphaerulina leaf blight occurs on most turfgrasses. Hitherto, <i>Leptosphaerulina</i> species associated with this disease include <i>L. americana, L. argentinensis, L. australis</i>, and <i>L. trifolii</i>. However, following Koch’s postulates, <i>L. australis</i> was confirmed as saprobes but not pathogens, and the other three species have not been tested. The pathogenicity of <i>Leptosphaerulina</i> spp. is still questionable. In this study, we isolated 19 <i>Leptosphaerulina</i> strains from diseased golf turfgrasses in China, and they were identified as <i>L. gaeumannii, L. saccharicola</i>, and a new species, <i>L. macrospora</i>, through multilocus (ITS, 28S, <i>rpb2</i>, and <i>tub2</i>) phylogenetic analyses and morphological observations. Pathogenicity test revealed that the three <i>Leptosphaerulina</i> species identified in this study cannot infect live/healthy turfgrass tissues of <i>Poa pratensis</i> and <i>Agrostis stolonifera</i> and only produced pseudothecia on the dead leaves of stressed seedlings. Considering the results of pathogenicity tests in this and previous studies, we speculate that most <i>Leptosphaerulina</i> species isolated from diseased turfgrass are not pathogens but saprobes. Applying proper management practices to prevent severe turfgrass stress is a key measure to reduce or eliminate the effects of <i>Leptosphaerulina</i> on golf turfgrass.
DOI: 10.6084/m9.figshare.7071170
title: MOESM5 of Comparative RNA-Seq analysis on the regulation of cucumber sex differentiation under different ratios of blue and red light

description: Additional file 5: Table S2. Expression data of all the genes in R2B1 and R4B1 samples.
DOI: 10.6084/m9.figshare.7071170.v1
title: MOESM5 of Comparative RNA-Seq analysis on the regulation of cucumber sex differentiation under different ratios of blue and red light

description: Additional file 5: Table S2. Expression data of all the genes in R2B1 and R4B1 samples.
DOI: 10.6084/m9.figshare.13346676
title: Additional file 8 of Genome-wide characterization, expression analyses, and functional prediction of the NPF family in Brassica napus

description: Additional file 8: Table S4. Transcription factors with potential binding sites in promoter regions of BnaNPF genes.
DOI: 10.6084/m9.figshare.13346844.v1
title: Additional file 4 of Identification of a cytosine methyltransferase that improves transformation efficiency in Methylomonas sp. DH-1

description: Additional file 4. Anti-psy sRNA plasmid map in SnapGene file format.
DOI: 10.6084/m9.figshare.13346838.v1
title: Additional file 2 of Identification of a cytosine methyltransferase that improves transformation efficiency in Methylomonas sp. DH-1

description: Additional file 2. Psy plasmid map in SnapGene file format.
DOI: 10.6084/m9.figshare.13346634
title: Additional file 11 of Genome-wide characterization, expression analyses, and functional prediction of the NPF family in Brassica napus

description: Additional file 11: Table S6. Expression profiles (FPKM value) of BnaNPF genes in 50 Brassica napus tissues at different developmental stages.
DOI: 10.6084/m9.figshare.13346643
title: Additional file 14 of Genome-wide characterization, expression analyses, and functional prediction of the NPF family in Brassica napus

description: Additional file 14: Table S8. Expression profiles of 12 candidate BnaNPF genes under hormone inductions by qRT-PCR.
DOI: 10.6084/m9.figshare.13346673
title: Additional file 7 of Genome-wide characterization, expression analyses, and functional prediction of the NPF family in Brassica napus

description: Additional file 7: Table S3. List of cis-acting elements in promoter regions of BnaNPF genes.
DOI: 10.6084/m9.figshare.13346652
title: Additional file 17 of Genome-wide characterization, expression analyses, and functional prediction of the NPF family in Brassica napus

description: Additional file 17: Table S10. Primer list of the BnaNPF genes for qRT-PCR analysis.
DOI: 10.6084/m9.figshare.13346649
title: Additional file 16 of Genome-wide characterization, expression analyses, and functional prediction of the NPF family in Brassica napus

description: Additional file 16: Table S9. Distribution of the NPF2–1 subfamily members in 32 land plant species.
DOI: 10.6084/m9.figshare.13346655.v1
title: Additional file 1 of Genome-wide characterization, expression analyses, and functional prediction of the NPF family in Brassica napus

description: Additional file 1: Table S1. List of physical and chemical properties of candidate BnaNPF proteins.
DOI: 10.6084/m9.figshare.7579748
title: Genome-wide DNA methylation and transcriptomic profiles in the lifestyle strategies and asexual development of the forest fungal pathogen <i>Heterobasidion parviporum</i>

description: <i>Heterobasidion parviporum</i> is the most devastating fungal pathogen of conifer forests in Northern Europe. The fungus has dual life strategies, necrotrophy on living trees and saprotrophy on dead woods. DNA cytosine methylation is an important epigenetic modification in eukaryotic organisms. Our presumption is that the lifestyle transition and asexual development in <i>H. parviporum</i> could be driven by epigenetic effects. Involvements of DNA methylation in the regulation of aforementioned processes have never been studied thus far. RNA-seq identified lists of highly induced genes enriched in carbohydrate-active enzymes during necrotrophic interaction with host trees and saprotrophic sawdust growth. It also highlighted signaling- and transcription factor-related genes potentially associated with the transition of saprotrophic to necrotrophic lifestyle and groups of primary cellular activities throughout asexual development. Whole-genome bisulfite sequencing revealed that DNA methylation displayed pronounced preference in CpG dinucleotide context across the genome and mostly targeted transposable element (TE)-rich regions. TE methylation level demonstrated a strong negative correlation with TE expression, reinforcing the protective function of DNA methylation in fungal genome stability. Small groups of genes putatively subject to methylation transcriptional regulation in response to saprotrophic and necrotrophic growth in comparison with free-living mycelia were also explored. Our study reported on the first methylome map of a forest pathogen. Analysis of transcriptome and methylome variations associated with asexual development and different lifestyle strategies provided further understanding of basic biological processes in <i>H. parviporum</i>. More importantly, our work raised additional potential roles of DNA methylation in fungi apart from controlling the proliferation of TEs.
DOI: 10.6084/m9.figshare.13346652.v1
title: Additional file 17 of Genome-wide characterization, expression analyses, and functional prediction of the NPF family in Brassica napus

description: Additional file 17: Table S10. Primer list of the BnaNPF genes for qRT-PCR analysis.
DOI: 10.6084/m9.figshare.13346676.v1
title: Additional file 8 of Genome-wide characterization, expression analyses, and functional prediction of the NPF family in Brassica napus

description: Additional file 8: Table S4. Transcription factors with potential binding sites in promoter regions of BnaNPF genes.
DOI: 10.15156/bio/sh1750364.08fu
title: SH1750364.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1750365.08fu
title: SH1750365.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh384640.07fu
title: SH384640.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh384641.07fu
title: SH384641.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1750366.08fu
title: SH1750366.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1750367.08fu
title: SH1750367.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh384642.07fu
title: SH384642.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.