cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.18092693.v1
title: Data associated with manuscript

description: Data associated with main analysis and figures presented in manuscript titled: "A newly invasive species may promote dissimilarity of pest populations between organic and conventional farming systems." Dataset titled: "Bloometal_DissimilarityAnalysis_GPSPoints_DataFinal.csv" are associated with the map of site locations shown in Figure 1. Please note that GPS points have been jittered ~5km to protect the identity of farmer collaborators. The seven datasets tilted: "Bloom_DissimilarityAnalysis_GAMandHGAMValuesXXX_DataFinal.csv" are files associated with the GAM and HGAM analysis accompanying Figures 2 and 3, where XXX is either the common name of a species or how these abundance data were summed across species (see manuscript for details). The two datasets titled: "Bloom_DissimilarityAnalysis_ElasticTemporalBetaDiveristyValuesXXX_DataFinal.csv" are files associated with the temporal beta diversity analysis accompanying Figure 4, where XXX is the year associated with these data (see manuscript for details). Column definitions across the files are as follows: site.anonymous - the 27 site names made anonymous to protect the identity of farmer collaborators and used to display the site, year, and status (see definition) in Figure 1; status - the farming practices used at the site (organic, conventional, and outlier) (see manuscript for a description of the outlier site); latitude.jittered - the latitude of the site jittered (see description of jittering above); longitude.jittered - the longitude of the site jittered (see prior comment); site.anonymous.repeatedsample - sites that were sampled in both study years and used as a random effect in the GAM and HGAM analysis; year - the study year; region - the geographic region where the site is located used as a random effect in the HGAM analysis; variable - either the common name of a species as an abbreviation (see manuscript for details) or how data were summed across species (see prior comment); doy - day of year when sample was taken using in HGAM analysis; value - abundance of species or summation of species using different approaches (see manuscript for details); site.anonymous.status - the anonymous site name and status used as a grouping in the temporal beta diversity analysis; date - the date the sample was taken; sm: abundance of Swede midge for site, status, date combination in temporal beta diversity analysis; icw: abundance of imported cabbage worm for site, status, date combination in temporal beta diversity analysis; diamond back moth: abundance of diamond back moth for site, status, date combination in temporal beta diversity analysis; cl: abundance of cabbage looper for site, status, date combination in temporal beta diversity analysis; ot: abundance of cabbage looper for site, status, date combination in temporal beta diversity analysis. Any transformations of these data and associations of figures and data with tables are described in the manuscript in detail. <br>
DOI: 10.5519/qd.8tcgpse8
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (4994111 records)
DOI: 10.34740/kaggle/dsv/3019709
title: Omicron daily cases by country (COVID-19 variant)
DOI: 10.6084/m9.figshare.18092720
title: 27Dec21 Trimmed phylogenetic trees

description: Phylogenetic trees created from the newick file of a maximum-likelihood phylogenetic tree to represent the relationship between ODRI and RSM isolates of S. epidermidis
DOI: 10.6084/m9.figshare.18092720.v1
title: 27Dec21 Trimmed phylogenetic trees

description: Phylogenetic trees created from the newick file of a maximum-likelihood phylogenetic tree to represent the relationship between ODRI and RSM isolates of S. epidermidis
DOI: 10.5281/zenodo.5830892
title: Accipiter cooperi decontaminated gx

description: .
DOI: 10.5281/zenodo.5830891
title: Accipiter cooperi decontaminated gx

description: .
DOI: 10.5281/zenodo.5830905
title: Isopret data files

description: Data files that are downloaded for use by the Isopret application.
DOI: 10.25934/pr00007585
title: Stan IVP 1/8/2022

description: Stan IVP 1/8/2022
DOI: 10.6084/m9.figshare.18018926
title: Dataset IJERPH paper

description: The dataset presents the results of the survey made in Gdańsk Airport in the group of airline passengers (non-random sample of 286 observations). In the case of further information please contact Dariusz Tłoczyński or Agnieszka Szmelter-Jarosz.<br>
DOI: 10.6084/m9.figshare.18018926.v2
title: Dataset IJERPH paper

description: The dataset presents the results of the survey made in Gdańsk Airport in the group of airline passengers (non-random sample of 286 observations). In the case of further information please contact Dariusz Tłoczyński or Agnieszka Szmelter-Jarosz.<br>
DOI: 10.6084/m9.figshare.18018926.v1
title: Dataset IJERPH paper

description: The dataset presents the results of the survey made in Gdańsk Airport in the group of airline passengers (non-random sample of 286 observations). In the case of further information please contact Dariusz Tłoczyński or Agnieszka Szmelter-Jarosz.<br>
DOI: 10.5281/zenodo.5830908
title: The bacterial toxin colibactin triggers prophage induction

description: Raw data associated with project.
DOI: 10.5281/zenodo.4683077
title: The bacterial toxin colibactin triggers prophage induction

description: Raw data associated with project.
DOI: 10.5281/zenodo.5830907
title: Actenoides lindsayi decontaminated gx

description: .
DOI: 10.5281/zenodo.5830906
title: Actenoides lindsayi decontaminated gx

description: .
DOI: 10.5281/zenodo.5830902
title: LOOK dataset

description: Public release of the LOOK Dataset - the opensource dataset by the work "Do Pedestrians Pay Attention? Eye Contact Detection in the Wild" - preprint submitted on 08.12.2021
DOI: 10.5281/zenodo.5830901
title: LOOK dataset

description: Public release of the LOOK Dataset - the opensource dataset by the work "Do Pedestrians Pay Attention? Eye Contact Detection in the Wild" - preprint submitted on 08.12.2021
DOI: 10.5517/ccdc.csd.cc27r1tw
title: CCDC 2077738: Experimental Crystal Structure Determination

description: Related Article: Bi-Lian Chai, Shu-Li Yao, Xin Xie, Hui Xu, Teng-Fei Zheng, Jin-Yan Li, Jing-Lin Chen, Sui-Jun Liu, He-Rui Wen|2021|Cryst.Growth Des.|22|277|doi:10.1021/acs.cgd.1c00923
DOI: 10.5517/ccdc.csd.cc239pty
title: CCDC 1945740: Experimental Crystal Structure Determination

description: Related Article: Sarah K. Y. Ho, Francis Y. T. Lam, Adiran de Aguirre, Feliu Maseras, Andrew J. P. White, George J. P. Britovsek|2021|Organometallics|40|4077|doi:10.1021/acs.organomet.1c00487
DOI: 10.5281/zenodo.5830924
title: Alcedo quadribrachys decontaminated gx

description: .
DOI: 10.5281/zenodo.5830923
title: Alcedo quadribrachys decontaminated gx

description: .
DOI: 10.15468/r4xg8a
title: Three new species of Iodosphaeria (Xylariomycetidae): I. chiayiensis, I. jinghongensis and I. thailandica

description: This dataset contains the digitized treatments in Plazi based on the original journal article Dissanayake, Lakmali S., Marasinghe, Diana S., Samarakoon, Milan C., Maharachchikumbura, Sajeewa S. N., Mortimer, Peter E., Hyde, Kevin D., Kuo, Chang-Hsin, Kang, Ji-Chuan (2022): Three new species of Iodosphaeria (Xylariomycetidae): I. chiayiensis, I. jinghongensis and I. thailandica. MycoKeys 86: 1-17, DOI: http://dx.doi.org/10.3897/mycokeys.86.75801, URL: http://dx.doi.org/10.3897/mycokeys.86.75801
DOI: 10.15468/y8tmnv
title: Notes on Carex (Cyperaceae) from China (VIII): five new species and a new variety from southern and south-western China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lu, Yi-Fei, Jin, Xiao-Feng (2022): Notes on Carex (Cyperaceae) from China (VIII): five new species and a new variety from southern and south-western China. PhytoKeys 188: 31-47, DOI: http://dx.doi.org/10.3897/phytokeys.188.77776, URL: http://dx.doi.org/10.3897/phytokeys.188.77776
DOI: 10.15468/p7ehgr
title: Carex malipoensis (Cyperaceae), a new species from southeast Yunnan, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Li, Yuan-Yuan, Chen, Ya-Ping, Jiang, Li-Qiong, Liu, En-De, Luo, Yuan, Peng, Hua (2022): Carex malipoensis (Cyperaceae), a new species from southeast Yunnan, China. PhytoKeys 188: 19-29, DOI: http://dx.doi.org/10.3897/phytokeys.188.75401, URL: http://dx.doi.org/10.3897/phytokeys.188.75401
DOI: 10.15468/f65c6n
title: Grismadox gen. nov., a new Neotropical genus of ant-resembling spiders (Araneae, Corinnidae, Castianeirinae), including the description of two new species from Bolivia and Paraguay

description: This dataset contains the digitized treatments in Plazi based on the original journal article Pett, Brogan L., Rubio, Gonzalo D., Perger, Robert (2022): Grismadox gen. nov., a new Neotropical genus of ant-resembling spiders (Araneae, Corinnidae, Castianeirinae), including the description of two new species from Bolivia and Paraguay. Zoosystematics and Evolution 98 (1): 1-11, DOI: http://dx.doi.org/10.3897/zse.98.76677, URL: http://dx.doi.org/10.3897/zse.98.76677
DOI: 10.15468/yedwnx
title: The genus Cletocamptus (Harpacticoida, Canthocamptidae): a reappraisal, with proposal of a new subfamily, a new genus, and a new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gomez, Samuel, Yanez-Rivera, Beatriz (2022): The genus Cletocamptus (Harpacticoida, Canthocamptidae): a reappraisal, with proposal of a new subfamily, a new genus, and a new species. ZooKeys 1080: 165-208, DOI: http://dx.doi.org/10.3897/zookeys.1080.71192, URL: http://dx.doi.org/10.3897/zookeys.1080.71192
DOI: 10.5281/zenodo.5830930
title: Amissidens hainesi RB0400 ARBOR decontaminated gx

description: .
DOI: 10.5281/zenodo.5830929
title: Amissidens hainesi RB0400 ARBOR decontaminated gx

description: .
DOI: 10.5281/zenodo.5830927
title: DIRECTLib - a library of global optimization problems for DIRECT-type methods

description: <strong>DIRECTLib - a library of a box and generally-constrained global optimization problems for DIRECT-type methods</strong> In this library, we present an extended collection of a box and generally constrained global optimization test problems (in MATLAB format) typically used in benchmarking various DIRECT-type [1] methods in the relevant literature (see, e.g., [2-6] and references given therein). File: <strong>WCGO_Test_results.xlsx </strong>contains<strong> </strong>experimental results presented in: https://arxiv.org/abs/2109.14912 <strong>References</strong> Jones, D. R., Perttunen, C. D. and Stuckman, B. E. (1993) ‘Lipschitzian optimization without the Lipschitz constant’, <em>Journal of Optimization Theory and Applications</em>, 79(1), pp. 157–181. <strong>doi</strong><strong>: 10.1007/BF00941892</strong>. R. Paulavičius, J. Žilinskas. (2014) Simplicial Global Optimization, SpringerBriefs in Optimization, Springer New York, New York, NY. <strong>doi:10.1007/978-1-4614-9093-7</strong> L. Stripinis, R. Paulavičius, J. Žilinskas. (2018) Improved scheme for selection of potentially optimal hyper-rectangles in DIRECT, Optimization Letters 12 (7) 1699–1712. <strong>doi:10.1007/s11590-017-1228-4</strong> L. Stripinis, R. Paulavičius, J. Žilinskas. (2019) Penalty functions and two-step selection procedure based DIRECT-type algorithm for constrained global optimization, Structural and Multidisciplinary Optimization 59 (6) 2155–2175. <strong>doi:10.1007/s00158-018-2181-2</strong>. L. Stripinis, J. Žilinskas, L. G. Casado, R. Paulavičius (2021) On MATLAB experience in accelerating DIRECT-GLce algorithm for constrained global optimization through dynamic data structures and parallelization. <em>Applied Mathematics and Computation</em>, DOI: 10.1016/j.amc.2020.125596 L. Stripinis, R. Paulavičius (2021) A new DIRECT-GLh algorithm for global optimization with hidden constraints. <em>Optimization Letters</em>, 15, p. 1865-1884, DOI: 10.1007/s11590-021-01726-z
description: {"references": ["L. Stripinis, R. Paulavi\u010dius, J. \u017dilinskas (2018) Improved scheme for selection of potentially optimal hyper-rectangles in DIRECT. Optimization Letters, 12 (7), p. 1699-1712, ISSN: 1862-4472, DOI: 10.1007/s11590-017-1228-4", "L. Stripinis, R. Paulavi\u010dius, J. \u017dilinskas (2019) Penalty functions and two-step selection procedure based DIRECT-type algorithm for constrained global optimization. Structural and Multidisciplinary Optimization 59 (6), p. 2155-2175, DOI: 10.1007/s00158-018-2181-2", "L. Stripinis, J. \u017dilinskas, L. G. Casado, R. Paulavi\u010dius (2021) On MATLAB experience in accelerating DIRECT-GLce algorithm for constrained global optimization through dynamic data structures and parallelization. Applied Mathematics and Computation, DOI: 10.1016/j.amc.2020.125596", "L. Stripinis, R. Paulavi\u010dius (2021) A new DIRECT-GLh algorithm for global optimization with hidden constraints. Optimization Letters, 15, p. 1865-1884, DOI: 10.1007/s11590-021-01726-z"]}
DOI: 10.5281/zenodo.5116255
title: A Thermogelling Organic-Inorganic Hybrid Hydrogel with Excellent Printability, Shape Fidelity and Cytocompatibility for 3D Bioprintingg

description: Dataset for manuscript submitted for peer review
DOI: 10.5281/zenodo.5116254
title: A Thermogelling Organic-Inorganic Hybrid Hydrogel with Excellent Printability, Shape Fidelity and Cytocompatibility for 3D Bioprintingg

description: Dataset for manuscript submitted for peer review
DOI: 10.5281/zenodo.5830950
title: Danaus melanippus decontaminated gx

description: .
DOI: 10.5281/zenodo.5830949
title: Danaus melanippus decontaminated gx

description: .
DOI: 10.5517/ccdc.csd.cc239py2
title: CCDC 1945744: Experimental Crystal Structure Determination

description: Related Article: Sarah K. Y. Ho, Francis Y. T. Lam, Adiran de Aguirre, Feliu Maseras, Andrew J. P. White, George J. P. Britovsek|2021|Organometallics|40|4077|doi:10.1021/acs.organomet.1c00487
DOI: 10.5517/ccdc.csd.cc239pz3
title: CCDC 1945745: Experimental Crystal Structure Determination

description: Related Article: Sarah K. Y. Ho, Francis Y. T. Lam, Adiran de Aguirre, Feliu Maseras, Andrew J. P. White, George J. P. Britovsek|2021|Organometallics|40|4077|doi:10.1021/acs.organomet.1c00487
DOI: 10.5517/ccdc.csd.cc286ljm
title: CCDC 2091710: Experimental Crystal Structure Determination

description: Related Article: Bi-Lian Chai, Shu-Li Yao, Xin Xie, Hui Xu, Teng-Fei Zheng, Jin-Yan Li, Jing-Lin Chen, Sui-Jun Liu, He-Rui Wen|2021|Cryst.Growth Des.|22|277|doi:10.1021/acs.cgd.1c00923
DOI: 10.5517/ccdc.csd.cc239psx
title: CCDC 1945739: Experimental Crystal Structure Determination

description: Related Article: Sarah K. Y. Ho, Francis Y. T. Lam, Adiran de Aguirre, Feliu Maseras, Andrew J. P. White, George J. P. Britovsek|2021|Organometallics|40|4077|doi:10.1021/acs.organomet.1c00487
DOI: 10.34740/kaggle/dsv/3020084
title: Aviation Accident Database & Synopses
DOI: 10.6084/m9.figshare.13480125.v1
title: Concurrent modelling of carbonation and chloride-induced deterioration and uncertainty treatment in aging bridge fragility assessment

description: Significant research efforts have been recently invested towards the evaluation of chloride-induced deterioration effects on the seismic vulnerability of aging highway bridges. Furthermore, when located in coastal cities with increased urbanisation or near shipyards, bridge structures may also be subjected to potentially high levels of carbon dioxide emissions. Consequently, the physicochemical process resulting from simultaneous ingress of chlorides and concrete carbonation may lead to accelerated corrosion deterioration of reinforced concrete components, as evidenced in past experimental tests. Nevertheless, little attention has been paid towards modelling this joint influence of chloride and carbonation-induced corrosion deterioration on strength degradation of bridge components. The present study proposes a numerical iterative scheme to evaluate the simultaneous impact of these deterioration mechanisms on the seismic response and bridge fragility. The proposed framework is demonstrated on a case-study multi-span continuous steel girder bridge in Central and Southeastern United States. Results reveal a considerable influence on the corrosion initiation time and seismic vulnerability under the concurrent carbonation and chloride ingress. Furthermore, this study also conducts a systematic exploration of uncertainty at different stages of the deterioration process. This exercise helps provide recommendations on balancing between computational complexity and accuracy of seismic fragility predictions.
DOI: 10.5281/zenodo.5830997
title: Simulation outputs used in "Individual variation in dispersal, and its sources, shape the fate of pushed vs. pulled range expansions"

description: Simulation outputs used in "Individual variation in dispersal, and its sources, shape the fate of pushed vs. pulled range expansions" (by Maxime Dahirel, Chloé Guicharnaud and Elodie Vercken) This is a copy for archiving purposes of the saved outputs from a NetLogo simulation model of range expansions, used in the analyses described in the following GitHub repository: https://github.com/mdahirel/pushed-pulled-2020-heritability-IBM (Zenodo archive: https://doi.org/10.5281/zenodo.5830993) This .csv file is the final output of the "generate_simulations" code in that repo, and feeds into in the "analyse_simulations" and "supplementary" codes. It is meant to be copied in the NetLogo_output folder of the aforementioned repo after download, in case one: - wants to check our analysis code - and does not want/ have time to re-run the simulations from scratch For any other information, including on the contents of the csv, please see the aforementioned repository
DOI: 10.5281/zenodo.5830996
title: Simulation outputs used in "Individual variation in dispersal, and its sources, shape the fate of pushed vs. pulled range expansions"

description: Simulation outputs used in "Individual variation in dispersal, and its sources, shape the fate of pushed vs. pulled range expansions" (by Maxime Dahirel, Chloé Guicharnaud and Elodie Vercken) This is a copy for archiving purposes of the saved outputs from a NetLogo simulation model of range expansions, used in the analyses described in the following GitHub repository: https://github.com/mdahirel/pushed-pulled-2020-heritability-IBM (Zenodo archive: https://doi.org/10.5281/zenodo.5830993) This .csv file is the final output of the "generate_simulations" code in that repo, and feeds into in the "analyse_simulations" and "supplementary" codes. It is meant to be copied in the NetLogo_output folder of the aforementioned repo after download, in case one: - wants to check our analysis code - and does not want/ have time to re-run the simulations from scratch For any other information, including on the contents of the csv, please see the aforementioned repository
DOI: 10.5281/zenodo.5818073
title: A letter to the Lancet Planetary Health: Assessment from our world in data of overall gain in mortality after COVID pharmaceutical intervention

description: Straightforward comparison of COVID mortality before and after the pharmaceutical intervention as recovered from the site https://ourworldindata.org/explorers/coronavirus-data-explorer Submitted as a letter to Lancet Planetary Health
DOI: 10.5281/zenodo.5792285
title: A letter to the Lancet Planetary Health: Assessment from our world in data of overall gain in mortality after COVID pharmaceutical intervention

description: Straightforward comparison of COVID mortality before and after the pharmaceutical intervention as recovered from the site https://ourworldindata.org/explorers/coronavirus-data-explorer Submitted as a letter to Lancet Planetary Health
DOI: 10.5281/zenodo.5831029
title: Delias pasithoe decontaminated gx

description: .
DOI: 10.5281/zenodo.5831028
title: Delias pasithoe decontaminated gx

description: .
DOI: 10.5281/zenodo.5831058
title: Danaus melanippus zanfona pass 1

description: .
DOI: 10.5281/zenodo.5831057
title: Danaus melanippus zanfona pass 1

description: .
DOI: 10.25345/c5pc41
title: MassIVE MSV000088663 - Untargeted Plasma Metabolomic Profiling of Type 2 Diabetes-induced Mice
title: We performed an untargeted metabolomic analysis on plasma from aged and aged+type 2 diabetes mice (C57BL/6) cohorts. Metabolites were extracted with acetonitrile and data acquired by LC-MS/MS (Agilent nanoLC 1260 Infinity-6530A Accurate Mass Q-TOF) using data-dependent acquisition in positive ion mode.
DOI: 10.34740/kaggle/dsv/3020367
title: ECB speeches etc. 1997 to 2022-01-02
DOI: 10.6084/m9.figshare.17152841
title: Supplementary materials - (Chapter 2).xlsx

description: Supplement materials -(chapter 2)<br>
DOI: 10.6084/m9.figshare.17152841.v2
title: Supplementary materials - (Chapter 2).xlsx

description: Supplement materials -(chapter 2)<br>
DOI: 10.6084/m9.figshare.17152841.v1
title: Supplementary materials - (Chapter 2).xlsx

description: Supplement materials -(chapter 2)<br>
DOI: 10.6084/m9.figshare.18092846
title: Analysing_Bacterial_Strains

description: This is just an example of the simulation data in the paper 'Computational analyses of bacterial strains from shotgun reads' by Minerve Fatimae Ventolere and Saidi Wang
DOI: 10.6084/m9.figshare.18092846.v2
title: Analysing_Bacterial_Strains

description: This is just an example of the simulation data in the paper 'Computational analyses of bacterial strains from shotgun reads' by Minerve Fatimae Ventolere and Saidi Wang
DOI: 10.6084/m9.figshare.18092846.v1
title: Analysing_Bacterial_Strains

description: This is just an example of the simulation data in the paper 'Computational analyses of bacterial strains from shotgun reads' by Minerve Fatimae Ventolere and Saidi Wang
DOI: 10.6084/m9.figshare.17155787
title: Supplementary materials - chapter 3

description: Supplementary materials - chapter 3
DOI: 10.6084/m9.figshare.17155787.v4
title: Supplementary materials - chapter 3

description: Supplementary materials - chapter 3
DOI: 10.6084/m9.figshare.17155787.v3
title: Supplementary materials- (Chapter 3).xlsx

description: Supplementary materials -(Chapter 3)<br>
DOI: 10.5281/zenodo.5831095
title: Raman Signal Denoising using Fully Convolutional Encoder Decoder

description: Test dataset used in the manuscript 'Raman Signal Denoising using Fully Convolutional Encoder Decoder'.
DOI: 10.5281/zenodo.5831094
title: Raman Signal Denoising using Fully Convolutional Encoder Decoder

description: Test dataset used in the manuscript 'Raman Signal Denoising using Fully Convolutional Encoder Decoder'.
DOI: 10.6084/m9.figshare.18092822
title: BSB Vehicle Dataset

description: The data contain a polygon shapefile (.shp format) with 122,567 polygons corresponding to the vehicles (car, bus, truck, and boat) in 0.24m spatial resolution image with 57,856x42,496 pixel dimensions. The original image was obtained by the Infraestrutura de Dados Espaciais do Distrito Federal - IDE/DF(2022). Geoportal/DF. Available at: https://www.geoportal.seduh.df.gov.br/geoportal/ (accessed on January 8, 2022). The vectors correspond to the image taken in 2016.<br><br>
DOI: 10.6084/m9.figshare.18092864.v1
title: DIM_AHR_Rep_1.clean.bw

description: Test file
DOI: 10.6084/m9.figshare.18092864
title: DIM_AHR_Rep_1.clean.bw

description: Test file
DOI: 10.6084/m9.figshare.17940149.v1
title: KEGG Pathway for H-VAE-Cox and X-VAE-Cox models

description: Significant KEGG Pathways for H-VAE-Cox and X-VAE-Cox models
DOI: 10.6084/m9.figshare.18092867.v1
title: E2_ERa_Rep_1.clean.deeptools.bw

description: Example bw
DOI: 10.6084/m9.figshare.18092867
title: E2_ERa_Rep_1.clean.deeptools.bw

description: Example bw