cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7910/dvn/v1rjpf/fd2ifo
title: ykc20170309_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/1ct5pp
title: ykc20160721_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4010631
title: Supplementary Material for: Inhibition of Aromatase Induces Partial Sex Change in a Cichlid Fish: Distinct Functions for Sex Steroids in Brains and Gonads

description: Sex steroids are major drivers of sexual development and also responsible for the maintenance of the established gender. Especially fishes exhibit great plasticity and less conservation in sex determination and sexual development compared to other vertebrate groups. In addition, fishes have a constant sex steroid production throughout their entire lifespan, which makes them particularly susceptible to interferences with the endogenous sex steroid system. This susceptibility has recently been used to show that inhibition of the key enzyme of estrogen synthesis, aromatase Cyp19a1, can induce functional sex reversal even in adult fish. Here, we investigated the impact of the aromatase inhibitor (AI) fadrozole in adult females of the East African cichlid fish <i>Astatotilapia burtoni</i>. Using gene expression, phenotypic measurements, behavioral experiments, and hormone measurements, we assessed if females treated with fadrozole develop a male-like phenotype. We found that AI treatment has a different effect on gene expression in the gonad compared to the brain, the 2 tissues mostly implicated in sexual development. In contrast to observations in other gonochoristic species, <i>A. burtoni</i> ovaries cannot be transformed into functional testis by AI. However, rapid changes towards a male-like phenotype can be induced with AI in coloration, hormone levels, and behavior.
DOI: 10.6084/m9.figshare.4010631.v1
title: Supplementary Material for: Inhibition of Aromatase Induces Partial Sex Change in a Cichlid Fish: Distinct Functions for Sex Steroids in Brains and Gonads

description: Sex steroids are major drivers of sexual development and also responsible for the maintenance of the established gender. Especially fishes exhibit great plasticity and less conservation in sex determination and sexual development compared to other vertebrate groups. In addition, fishes have a constant sex steroid production throughout their entire lifespan, which makes them particularly susceptible to interferences with the endogenous sex steroid system. This susceptibility has recently been used to show that inhibition of the key enzyme of estrogen synthesis, aromatase Cyp19a1, can induce functional sex reversal even in adult fish. Here, we investigated the impact of the aromatase inhibitor (AI) fadrozole in adult females of the East African cichlid fish <i>Astatotilapia burtoni</i>. Using gene expression, phenotypic measurements, behavioral experiments, and hormone measurements, we assessed if females treated with fadrozole develop a male-like phenotype. We found that AI treatment has a different effect on gene expression in the gonad compared to the brain, the 2 tissues mostly implicated in sexual development. In contrast to observations in other gonochoristic species, <i>A. burtoni</i> ovaries cannot be transformed into functional testis by AI. However, rapid changes towards a male-like phenotype can be induced with AI in coloration, hormone levels, and behavior.
DOI: 10.7910/dvn/v1rjpf/gfprmc
title: ykc20160703_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4010622
title: Supplementary Material for: Saliva Urea Nitrogen Continuously Reflects Blood Urea Nitrogen after Acute Kidney Injury Diagnosis and Management: Longitudinal Observational Data from a Collaborative, International, Prospective, Multicenter Study

description: <b><i>Background:</i></b> Acute kidney injury (AKI) is a growing global concern and often reversible. Saliva urea nitrogen (SUN) measured by a dipstick may allow rapid diagnosis. We studied longitudinal agreement between SUN and blood urea nitrogen (BUN) and the diagnostic performance of both. <b><i>Methods:</i></b> Agreement between SUN and BUN and diagnostic performance to diagnose AKI severity in AKI patients in the United States and Brazil were studied. Bland-Altman analysis and linear mixed effects models were employed to test the agreement between SUN and BUN. Receiver operating characteristics statistics were used to test the diagnostic performance to diagnose AKI severity. <b><i>Results:</i></b> We found an underestimation of BUN by SUN, decreasing with increasing BUN levels in 37 studied patients, consistent on all observation days. The diagnostic performance of SUN (AUC 0.81, 95% CI 0.63-0.98) was comparable to BUN (AUC 0.85, 95% CI 0.71-0.98). <b><i>Conclusion:</i></b> SUN reflects BUN especially in severe AKI. It also allows monitoring treatment responses. Video Journal Club ‘Cappuccino with Claudio Ronco' at http://www.karger.com/?doi=445041.
DOI: 10.6084/m9.figshare.4010628
title: Pachyprotasis kojimai Taeger & Shinohara, types

description: Figures of several type specimens of <i>Pachyprotasis kojimai </i>Taeger & Shinohara, 2017<br><br>Photos were taken with a Leica DFC 495 digital camera and a Leica M405 C stereomicroscope. Composite images with an extended depth of field were created from stacks of images using the software CombineZP, and finally arranged and partly enhanced with Ulead PhotoImpact X3. <br>
DOI: 10.6084/m9.figshare.4010619
title: PHEME dataset of rumours and non-rumours

description: This dataset contains a collection of Twitter rumours and non-rumours posted during breaking news. The five breaking news provided with the dataset are as follows:<br>* Charlie Hebdo: 458 rumours (22.0%) and 1,621 non-rumours (78.0%).* Ferguson: 284 rumours (24.8%) and 859 non-rumours (75.2%).* Germanwings Crash: 238 rumours (50.7%) and 231 non-rumours (49.3%).* Ottawa Shooting: 470 rumours (52.8%) and 420 non-rumours (47.2%).* Sydney Siege: 522 rumours (42.8%) and 699 non-rumours (57.2%).<br>The data is structured as follows. Each event has a directory, with two subfolders, rumours and non-rumours. These two folders have folders named with a tweet ID. The tweet itself can be found on the 'source-tweet' directory of the tweet in question, and the directory 'reactions' has the set of tweets responding to that source tweet.<br>This dataset was used in the paper 'Learning Reporting Dynamics during Breaking News for Rumour Detection in Social Media' for rumour detection. For more details, please refer to the paper.<br>License: The annotations are provided under a CC-BY license, while Twitter retains the ownership and rights of the content of the tweets.
DOI: 10.6084/m9.figshare.4010628.v1
title: Pachyprotasis kojimai Taeger & Shinohara, types

description: Figures of several type specimens of <i>Pachyprotasis kojimai </i>Taeger & Shinohara, 2017<br><br>Photos were taken with a Leica DFC 495 digital camera and a Leica M405 C stereomicroscope. Composite images with an extended depth of field were created from stacks of images using the software CombineZP, and finally arranged and partly enhanced with Ulead PhotoImpact X3. <br>
DOI: 10.7910/dvn/v1rjpf/pl8grg
title: ykc20170920_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/youalm
title: ykc20160725_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4010607
title: S1 Dataset Haiti rural school feeding 2016.dta

description: Study objective: We aimed to test the hypothesis that Vita Mamba, with systematic deworming in both study arms, would significantly reduce anemia among rural, school-aged children. Design and Methods. A cluster, randomized longitudinal study was conducted in two rural communities of the North-East Department of Haiti, 2014-2015. Healthy children ages 3-16 years were enrolled (n=321) and assigned by school to intervention (Vita Mamba and deworming) and control (deworming). Vita Mamba contains 260 kcal and meets &gt;75% of the Recommended Dietary Allowance for critical micronutrients. <br><br>
DOI: 10.7910/dvn/v1rjpf/qfuums
title: ykc20170703_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/sahua5
title: ykc20161029_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4010577
title: 1950-1959_network

description: Framing Psychology article network (1950s).
DOI: 10.7910/dvn/v1rjpf/fl6osg
title: ykc20161107_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4010574
title: 1950-1959_map

description: Framing Psychology article map (1950s).
DOI: 10.7910/dvn/v1rjpf/msdola
title: ykc20170305_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4010541
title: Open Data Survey

description: Survey run by Springer Nature in association with Figshare and Digital Science on awareness and use of open data.
DOI: 10.7910/dvn/v1rjpf/xh2qi4
title: ykc20171114_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4010535
title: 1950-1999_network

description: Framing Psychology article network (1950-1999).
DOI: 10.7910/dvn/v1rjpf/aflfia
title: ykc20160930_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4010541.v2
title: Open Data Survey

description: Survey run by Springer Nature in association with Figshare and Digital Science on awareness and use of open data.
DOI: 10.7910/dvn/v1rjpf/qwucjj
title: ykc20170606_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/ktcn4e
title: ykc20170726_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/tcgofa
title: ykc20170624_03.txt.gz

description: :unav
DOI: 10.17028/rd.lboro.4009959
title: Data for 'fault diagnosis of practical polymer electrolyte membrane (PEM) fuel cell system with data-driven approaches'

description: These data files are used in the work which has been published with title of fault diagnosis of practical polymer electrolyte membrane (PEM) fuel cell system with data-driven approaches in Fuel Cells. DOI: https://doi.org/10.1002/fuce.201600139.
DOI: 10.17028/rd.lboro.4009959.v1
title: Data for 'fault diagnosis of practical polymer electrolyte membrane (PEM) fuel cell system with data-driven approaches'

description: These data files are used in the work which has been published with title of fault diagnosis of practical polymer electrolyte membrane (PEM) fuel cell system with data-driven approaches in Fuel Cells. DOI: https://doi.org/10.1002/fuce.201600139.
DOI: 10.7910/dvn/v1rjpf/zgqjhg
title: ykc20160909_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4009953
title: Supplementary Data from No evidence that a range of artificial monitoring cues influence online donations to charity in anMTurk sample

description: Monitoring cues, such as an image of a face or pair of eyes, have been found to increase prosocial behaviour in several studies. However, other studies have found little or no support for this effect. Here, we examined whether monitoring cues affect online donations to charity while manipulating the emotion displayed, the number of watchers and the cue type. We also include as statistical controls a range of likely covariates of prosocial behaviour. Using the crowdsourcing Internet marketplace, Amazon Mechanical Turk (AMT), 1535 participants completed our survey and were given the opportunity to donate to charity while being shown an image prime. None of the monitoring primes we tested had a significant effect on charitable giving. By contrast, the control variables of culture, age, sex and previous charity giving frequency did predict donations. This work supports the importance of cultural differences and enduring individual differences in prosocial behaviour and shows that a range of artificial monitoring cues do not reliably boost online charity donation on MTurk.
DOI: 10.7910/dvn/v1rjpf/xpc8dh
title: ykc20160629_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4009953.v1
title: Supplementary Data from No evidence that a range of artificial monitoring cues influence online donations to charity in anMTurk sample

description: Monitoring cues, such as an image of a face or pair of eyes, have been found to increase prosocial behaviour in several studies. However, other studies have found little or no support for this effect. Here, we examined whether monitoring cues affect online donations to charity while manipulating the emotion displayed, the number of watchers and the cue type. We also include as statistical controls a range of likely covariates of prosocial behaviour. Using the crowdsourcing Internet marketplace, Amazon Mechanical Turk (AMT), 1535 participants completed our survey and were given the opportunity to donate to charity while being shown an image prime. None of the monitoring primes we tested had a significant effect on charitable giving. By contrast, the control variables of culture, age, sex and previous charity giving frequency did predict donations. This work supports the importance of cultural differences and enduring individual differences in prosocial behaviour and shows that a range of artificial monitoring cues do not reliably boost online charity donation on MTurk.
DOI: 10.7910/dvn/v1rjpf/fc0ixj
title: ykc20170327_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4009947
title: Paper II.Supp.Tables-3&4.xls from Mutation rate analysis via parent–progeny sequencing of the perennial peach II: no evidence for recombination-associated mutation

description: Mutation rates and recombination rates vary between species and between regions within a genome. What are the determinants of these forms of variation? Prior evidence has suggested that the recombination might be mutagenic with an excess of new mutations in the vicinity of recombination break points. As it is conjectured that domesticated taxa have higher recombination rates than wild ones, we expect domesticated taxa to have raised mutation rates. Here, we use parent–offspring sequencing in domesticated and wild peach to ask (i) whether recombination is mutagenic and (ii) whether domesticated peach has a higher recombination rate than wild peach. We find no evidence that domesticated peach has an increased recombination rate, nor an increased mutation rate near-recombination events. If recombination is mutagenic in these taxa, the effect is too weak to be detected by our analysis. While an absence of recombination-associated mutation might explain an absence of a recombination–heterozygozity correlation in peach, we caution against such an interpretation.
DOI: 10.7910/dvn/v1rjpf/ssfkzu
title: ykc20160505_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4009947.v1
title: Paper II.Supp.Tables-3&4.xls from Mutation rate analysis via parent–progeny sequencing of the perennial peach II: no evidence for recombination-associated mutation

description: Mutation rates and recombination rates vary between species and between regions within a genome. What are the determinants of these forms of variation? Prior evidence has suggested that the recombination might be mutagenic with an excess of new mutations in the vicinity of recombination break points. As it is conjectured that domesticated taxa have higher recombination rates than wild ones, we expect domesticated taxa to have raised mutation rates. Here, we use parent–offspring sequencing in domesticated and wild peach to ask (i) whether recombination is mutagenic and (ii) whether domesticated peach has a higher recombination rate than wild peach. We find no evidence that domesticated peach has an increased recombination rate, nor an increased mutation rate near-recombination events. If recombination is mutagenic in these taxa, the effect is too weak to be detected by our analysis. While an absence of recombination-associated mutation might explain an absence of a recombination–heterozygozity correlation in peach, we caution against such an interpretation.
DOI: 10.6084/m9.figshare.4009941
title: Puckett_etal_RatPhylogeog_Supplemental from Global population divergence and admixture of the brown rat (<i>Rattus norvegicus</i>)

description: Supplemental Tables
DOI: 10.7910/dvn/v1rjpf/3dcoqu
title: ykc20171211_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4009941.v1
title: Puckett_etal_RatPhylogeog_Supplemental from Global population divergence and admixture of the brown rat (<i>Rattus norvegicus</i>)

description: Supplemental Tables
DOI: 10.7910/dvn/v1rjpf/i7znm2
title: ykc20170626_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/7dg9mo
title: ykc20160517_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/xtgli8
title: ykc20161129_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/fvffta
title: ykc20170608_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/vrw0kq
title: ykc20160922_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/gjdadp
title: ykc20160108_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/5m0vgg
title: ykc20170322_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/hq0czq
title: ykc20171017_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/m0r21b
title: ykc20161130_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4009896
title: Supplementary Table 2. Complete data set from Chemical communication is not sufficient to explain reproductive inhibition in the bumblebee <i>Bombus impatiens</i>

description: Reproductive division of labour is a hallmark of eusociality, but disentangling the underlying proximate mechanisms can be challenging. In bumblebees, workers isolated from the queen can activate their ovaries and lay haploid, male eggs. We investigated if volatile, contact, visual or behavioural cues produced by the queen or brood mediate reproductive dominance in <i>Bombus impatiens.</i> Exposure to queen-produced volatiles, brood-produced volatiles and direct contact with pupae did not reduce worker ovary activation: only direct contact with the queen could reduce ovary activation. We evaluated behaviour, physiology and gene expression patterns in workers that were reared in chambers with all stages of brood and a free queen, caged queen (where workers could contact the queen, but the queen was unable to initiate interactions) or no queen. Workers housed with a caged queen or no queen fully activated their ovaries, whereas ovary activation in workers housed with a free queen was completely inhibited. The caged queen marginally reduced worker aggression and expression of an aggression-associated gene relative to queenless workers. Thus, queen-initiated behavioural interactions appear necessary to establish reproductive dominance. Queen-produced chemical cues may function secondarily in a context-specific manner to augment behavioural cues, as reliable or honest signal.
DOI: 10.7910/dvn/v1rjpf/yx5ubc
title: ykc20160117_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4009896.v1
title: Supplementary Table 2. Complete data set from Chemical communication is not sufficient to explain reproductive inhibition in the bumblebee <i>Bombus impatiens</i>

description: Reproductive division of labour is a hallmark of eusociality, but disentangling the underlying proximate mechanisms can be challenging. In bumblebees, workers isolated from the queen can activate their ovaries and lay haploid, male eggs. We investigated if volatile, contact, visual or behavioural cues produced by the queen or brood mediate reproductive dominance in <i>Bombus impatiens.</i> Exposure to queen-produced volatiles, brood-produced volatiles and direct contact with pupae did not reduce worker ovary activation: only direct contact with the queen could reduce ovary activation. We evaluated behaviour, physiology and gene expression patterns in workers that were reared in chambers with all stages of brood and a free queen, caged queen (where workers could contact the queen, but the queen was unable to initiate interactions) or no queen. Workers housed with a caged queen or no queen fully activated their ovaries, whereas ovary activation in workers housed with a free queen was completely inhibited. The caged queen marginally reduced worker aggression and expression of an aggression-associated gene relative to queenless workers. Thus, queen-initiated behavioural interactions appear necessary to establish reproductive dominance. Queen-produced chemical cues may function secondarily in a context-specific manner to augment behavioural cues, as reliable or honest signal.
DOI: 10.6084/m9.figshare.4009890
title: Figure 5 raw data. The raw values for each shear metric within the instrumented and control arteries of each mouse from Influence of shear stress magnitude and direction on atherosclerotic plaque composition

description: The precise flow characteristics that promote different atherosclerotic plaque types remain unclear. We previously developed a blood flow-modifying cuff for ApoE<sup>−/−</sup> mice that induces the development of advanced plaques with vulnerable and stable features upstream and downstream of the cuff, respectively. Herein, we sought to test the hypothesis that changes in flow magnitude promote formation of the upstream (vulnerable) plaque, whereas altered flow direction is important for development of the downstream (stable) plaque. We instrumented ApoE<sup>−/−</sup> mice (<i>n</i> = 7) with a cuff around the left carotid artery and imaged them with micro-CT (39.6 µm resolution) eight to nine weeks after cuff placement. Computational fluid dynamics was then performed to compute six metrics that describe different aspects of atherogenic flow in terms of wall shear stress magnitude and/or direction. In a subset of four imaged animals, we performed histology to confirm the presence of advanced plaques and measure plaque length in each segment. Relative to the control artery, the region upstream of the cuff exhibited changes in shear stress magnitude only (<i>p</i> p
DOI: 10.7910/dvn/v1rjpf/yyqfsk
title: ykc20160209_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4009887
title: Supplementary Table 3. Power analysis results from Chemical communication is not sufficient to explain reproductive inhibition in the bumblebee <i>Bombus impatiens</i>

description: Reproductive division of labour is a hallmark of eusociality, but disentangling the underlying proximate mechanisms can be challenging. In bumblebees, workers isolated from the queen can activate their ovaries and lay haploid, male eggs. We investigated if volatile, contact, visual or behavioural cues produced by the queen or brood mediate reproductive dominance in <i>Bombus impatiens.</i> Exposure to queen-produced volatiles, brood-produced volatiles and direct contact with pupae did not reduce worker ovary activation: only direct contact with the queen could reduce ovary activation. We evaluated behaviour, physiology and gene expression patterns in workers that were reared in chambers with all stages of brood and a free queen, caged queen (where workers could contact the queen, but the queen was unable to initiate interactions) or no queen. Workers housed with a caged queen or no queen fully activated their ovaries, whereas ovary activation in workers housed with a free queen was completely inhibited. The caged queen marginally reduced worker aggression and expression of an aggression-associated gene relative to queenless workers. Thus, queen-initiated behavioural interactions appear necessary to establish reproductive dominance. Queen-produced chemical cues may function secondarily in a context-specific manner to augment behavioural cues, as reliable or honest signal.