cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15162659
title: Atezolizumab_mUC

description: Validation analyses

This code was used to develop the best-performing CART-OMC model to predict atezolizumab response using gene expression profiles from 298 atezolizumab-treated mUC patients in the IMvigor210 discovery dataset. This model was then validated on 22 mUC patients treated with atezolizumab from the Synder et al. validation dataset.

This is the command line used for validation analyses: python -u GEX_validation_analyses.py -d GEX_discovery.csv -v GEX_validation.csv

Arguments:

-u --> Python code

-d --> discovery dataset: The tabulated pharmaco-omics dataset, where columns specify patients, their corresponding drug responses (CR, PR, SD, and PD), and gene expression features.

-v, --validation dataset: The tabulated pharmaco-omics dataset, where columns specify patients, their corresponding drug responses (CR, PR, SD, and PD), and gene expression features.
DOI: 10.5281/zenodo.15162660
title: Atezolizumab_mUC

description: Validation analyses

This code was used to develop the best-performing CART-OMC model to predict atezolizumab response using gene expression profiles from 298 atezolizumab-treated mUC patients in the IMvigor210 discovery dataset. This model was then validated on 22 mUC patients treated with atezolizumab from the Synder et al. validation dataset.

This is the command line used for validation analyses: python -u GEX_validation_analyses.py -d GEX_discovery.csv -v GEX_validation.csv

Arguments:

-u --> Python code

-d --> discovery dataset: The tabulated pharmaco-omics dataset, where columns specify patients, their corresponding drug responses (CR, PR, SD, and PD), and gene expression features.

-v, --validation dataset: The tabulated pharmaco-omics dataset, where columns specify patients, their corresponding drug responses (CR, PR, SD, and PD), and gene expression features.
DOI: 10.5281/zenodo.15162657
title: Empleos de CompuTrabajo en Colombia-2025 en trabajos relacionados con la disciplina de los datos

description: En este dataset hemos extraido la información de Título de la oferta, Empresa, Ubicación, Link, Fecha de publicación, Salario, Tipo de contrato, Modalidad y Requisitos de las ofertas de trabajo que aparecen por especificar el parametro data de la página web de CompuTrabajo en Colombia en Abril de 2025. 

Este dataset ha sido extraido como práctica educacional para aprender le uso y manejo de técnicas de "Web Scrapping".
DOI: 10.5281/zenodo.15162658
title: Empleos de CompuTrabajo en Colombia-2025 en trabajos relacionados con la disciplina de los datos

description: En este dataset hemos extraido la información de Título de la oferta, Empresa, Ubicación, Link, Fecha de publicación, Salario, Tipo de contrato, Modalidad y Requisitos de las ofertas de trabajo que aparecen por especificar el parametro data de la página web de CompuTrabajo en Colombia en Abril de 2025. 

Este dataset ha sido extraido como práctica educacional para aprender le uso y manejo de técnicas de "Web Scrapping".
DOI: 10.5281/zenodo.12696674
title: Full-coverage daily 0.1° XCO2 in China

description: This dataset is generated by a hybrid deep learning model.
DOI: 10.5281/zenodo.12696675
title: Full-coverage daily 0.1° XCO2 in China

description: This dataset is generated by deep forest model.
DOI: 10.5281/zenodo.12696802
title: Full-coverage daily 0.1° XCO2 in China

description: This dataset is generated by deep forest model.
DOI: 10.5281/zenodo.13352556
title: Full-coverage daily 0.1° XCO2 in China

description: This dataset is generated by deep forest model.
DOI: 10.5281/zenodo.15162682
title: Full-coverage daily 0.1° XCO2 in China

description: This dataset is generated by a hybrid deep learning model.
DOI: 10.15468/dl.a7vj98
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sorghum ×sudanense (Piper) Stapf"
 ]
}

 The dataset includes 19 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007044-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kqrjk7
title: Occurrence Download

description: A dataset containing 1450 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Issue is one of (Coordinate rounded, Geodetic datum assumed WGS84, Country derived from coordinates, Continent derived from country, Continent derived from coordinates, Recorded date mismatch, Recorded date invalid, Taxon match fuzzy, Taxon match higher rank, The taxon concept ID was not used in backbone matching, The taxon ID was not used in backbone matching, Modified date invalid, Multimedia URI invalid, Occurrence status inferred from individual count, Basis of record invalid, Institution match none, Collection match none, Institution match fuzzy, Collection match fuzzy, Institution collection mismatch)",
 "TaxonKey is Ursus thibetanus G"
 ]
}

 The dataset includes 1450 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007045-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ttjqrn
title: Occurrence Download

description: A dataset containing 640916 species occurrences available in GBIF matching the query:
{
 "PublishingCountry" : [
 "is Papua New Guinea"
 ]
}

 The dataset includes 640916 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007037-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.77rh2n
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Isoetes yunguiensis C.F.Wang & W.C.Taylor"
 ]
}

 The dataset includes 16 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007046-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8pvsz4
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei)",
 "Geometry POLYGON((70.43825 16.65076,144.56175 16.65076,144.56175 46.34924,70.43825 46.34924,70.43825 16.65076))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bambusa pervariabilis McClure"
 ]
}

 The dataset includes 27 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007048-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xnhhhg
title: Occurrence Download

description: A dataset containing 11744 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is MfN - Fossil plants (Paleophytic)"
 ]
}

 The dataset includes 11744 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007049-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15162687
title: Chemical Elements characteristics

description: This dataset contains information on the properties of chemical elements, collected through web scraping from Wikipedia. It includes features such as atomic number, symbol, name, atomic mass, group, period, state at room temperature, electronegativity, melting point, boiling point, and more. The dataset provides a structured foundation for chemical analysis, periodic trend visualization, or educational purposes.
DOI: 10.5281/zenodo.15162688
title: Chemical Elements characteristics

description: This dataset contains information on the properties of chemical elements, collected through web scraping from Wikipedia. It includes features such as atomic number, symbol, name, atomic mass, group, period, state at room temperature, electronegativity, melting point, boiling point, and more. The dataset provides a structured foundation for chemical analysis, periodic trend visualization, or educational purposes.
DOI: 10.15468/dl.rqeae5
title: Occurrence Download

description: A dataset containing 2771 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Schoenoplectus californicus (C.A.Mey.) Soják)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 2771 records from 171 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007050-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e53bbp
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Isoetes sinensis T.C.Palmer"
 ]
}

 The dataset includes 16 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007051-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wgztya
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei)",
 "Geometry POLYGON((70.43825 16.65076,144.56175 16.65076,144.56175 46.34924,70.43825 46.34924,70.43825 16.65076))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bambusa tuldoides Munro"
 ]
}

 The dataset includes 40 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007052-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dmy352
title: Occurrence Download

description: A dataset containing 29497 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Setaria parviflora (Poir.) Kerguélen)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 29497 records from 644 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007053-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x52zcv
title: Occurrence Download

description: A dataset containing 14769 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Thunbergia alata Bojer ex Sims)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 14769 records from 274 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007054-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.crrp4a
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei)",
 "Geometry POLYGON((70.43825 16.65076,144.56175 16.65076,144.56175 46.34924,70.43825 46.34924,70.43825 16.65076))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bambusa chungii McClure"
 ]
}

 The dataset includes 30 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007055-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fef2r6
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei)",
 "Geometry POLYGON((70.43825 16.65076,144.56175 16.65076,144.56175 46.34924,70.43825 46.34924,70.43825 16.65076))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cephalostachyum pallidum Munro"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007057-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14030390
title: Datasets for the article "Ultrafast Dynamics in Flavocytochrome C by Using Transient Absorption and Femtosecond Fluorescence Lifetime Spectroscopy"

description: This dataset contains the transient visible absorption (visTA) data from femtoseconds to nanoseconds of the heterodimeric protein FccAB from Thiocapsa roseopersicina upon excitation at three different actinic pumps (360, 400, and 560 nm). 

Experimental "raw" data (chirp-corrected) have been collected at ELI-ERIC and are designated as FccAB_XXX_DATA, where XXX indicates the actinic pump wavelength. The DATA files are 2D arrays of differential absorbance (in mOD) as a function of the pump-probe time delays (in ps, indicated in the first column), and wavelengths (in nm, indicated in the first row). These datasets are plotted in Fig. 5 and Fig. S3A.

The datasets have been analyzed by two different approaches using custom scripts: lifetime distribution analysis (LDA) without taking into account the impulse response function (IRF), and global kinetic analysis (GKA) with a sequential model and fitted Gaussian IRF.

LDA outputs lifetime density maps (FccAB_XXX_LDA_LDM files, Fig. S3B), average dynamical contents (FccAB_XXX_LDA_ADC files, Fig. S6A), and decay-associated difference spectra (FccAB_XXX_LDA_DADS files, Fig. S6B). The LDM files obtained by inverse Laplace transform using the maximum entropy method are 2D arrays of the amplitudes as a function of the wavelength (in nm, indicated in the first column), and the lifetimes (in seconds, indicated in the first row). The ADC files report the normalized ADC as a function of the lifetime (in seconds, indicated in the first column). The DADS files are 1D arrays of the differential absorbance (in mOD) as a function of the wavelength (in nm, indicated in the first column). Columns 2 and 3 represent components 1 and 2 (lifetimes in seconds indicated on top).

GKA outputs the species fraction (FccAB_XXX_GKA_FRACTION files, Fig. S5A), and evolution-associated difference spectra (FccAB_XXX_GKA_EADS files, Fig. S5B). In FRACTION files, the first column indicates the time delays (in s), the second column indicates the IRF, and the third and fourth columns are the species fraction of components 1 and 2 (lifetimes indicated on top). In the EADS files, the first column indicates the wavelength (in nm), and the second and third columns report the differential absorbance (in mOD) of components 1 and 2 (lifetimes in seconds indicated on top).

For more details, see the associated publication.
DOI: 10.5281/zenodo.14030391
title: Datasets for the article "Ultrafast Dynamics in Flavocytochrome C by Using Transient Absorption and Femtosecond Fluorescence Lifetime Spectroscopy"

description: This dataset contains the transient visible absorption (visTA) data from femtoseconds to nanoseconds of the heterodimeric protein FccAB from Thiocapsa roseopersicina upon excitation at three different actinic pumps (360, 400, and 560 nm). 

Experimental "raw" data (chirp-corrected) have been collected at ELI-ERIC and are designated as FccAB_XXX_DATA, where XXX indicates the actinic pump wavelength. The DATA files are 2D arrays of differential absorbance (in mOD) as a function of the pump-probe time delays (in ps, indicated in the first column), and wavelengths (in nm, indicated in the first row). These datasets are plotted in Fig. 5 and Fig. S3A.

The datasets have been analyzed by two different approaches using custom scripts: lifetime distribution analysis (LDA) without taking into account the impulse response function (IRF), and global kinetic analysis (GKA) with a sequential model and fitted Gaussian IRF.

LDA outputs lifetime density maps (FccAB_XXX_LDA_LDM files, Fig. S3B), average dynamical contents (FccAB_XXX_LDA_ADC files, Fig. S6A), and decay-associated difference spectra (FccAB_XXX_LDA_DADS files, Fig. S6B). The LDM files obtained by inverse Laplace transform using the maximum entropy method are 2D arrays of the amplitudes as a function of the wavelength (in nm, indicated in the first column), and the lifetimes (in seconds, indicated in the first row). The ADC files report the normalized ADC as a function of the lifetime (in seconds, indicated in the first column). The DADS files are 1D arrays of the differential absorbance (in mOD) as a function of the wavelength (in nm, indicated in the first column). Columns 2 and 3 represent components 1 and 2 (lifetimes in seconds indicated on top).

GKA outputs the species fraction (FccAB_XXX_GKA_FRACTION files, Fig. S5A), and evolution-associated difference spectra (FccAB_XXX_GKA_EADS files, Fig. S5B). In FRACTION files, the first column indicates the time delays (in s), the second column indicates the IRF, and the third and fourth columns are the species fraction of components 1 and 2 (lifetimes indicated on top). In the EADS files, the first column indicates the wavelength (in nm), and the second and third columns report the differential absorbance (in mOD) of components 1 and 2 (lifetimes in seconds indicated on top).

For more details, see the associated publication.
DOI: 10.15468/dl.jyhxas
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei)",
 "Geometry POLYGON((70.43825 16.65076,144.56175 16.65076,144.56175 46.34924,70.43825 46.34924,70.43825 16.65076))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cephalostachyum pergracile Munro"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007058-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mmhhad
title: Occurrence Download

description: A dataset containing 128124 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Thymus praecox Opiz)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 128124 records from 717 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007056-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7f48eh
title: Occurrence Download

description: A dataset containing 1774 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hypericum canariense",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1774 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008939-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2tpbuy
title: Occurrence Download

description: A dataset containing 264812 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lissotriton vulgaris"
 ]
}

 The dataset includes 264812 records from 910 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008885-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16894307
title: Metadata table from Intermediate version of the data management plan

description: Metadata table from Intermediate version of the data management plan.

The data set is related to The Intermediate Data Management Plan (DMP), which goal is to update at mid-project the data management lifecycle for the data collected, processed, and generated within the WATERUN project. Delivered at Month 36 out of 48, this version comes at a stage where project partners have produced significant data and made substantial progress in their activities. It builds uponthe initial DMP (D6.2, M6) and reflects advancements in data collection, organization, and dissemination.This intermediate version incorporates:• Review of datasets generated so far, with updates reflected in the listing and short descriptionof the outputs and datasets in WATERUN Tasks.• Enhancements in FAIR data principles to ensure improved Findability, Accessibility,Interoperability, and Reusability.• Improved compliance with Open Science guidelines, reinforcing WATERUN’s commitment totransparent and accessible research.
DOI: 10.5281/zenodo.16894308
title: Metadata table from Intermediate version of the data management plan

description: Metadata table from Intermediate version of the data management plan.

The data set is related to The Intermediate Data Management Plan (DMP), which goal is to update at mid-project the data management lifecycle for the data collected, processed, and generated within the WATERUN project. Delivered at Month 36 out of 48, this version comes at a stage where project partners have produced significant data and made substantial progress in their activities. It builds uponthe initial DMP (D6.2, M6) and reflects advancements in data collection, organization, and dissemination.This intermediate version incorporates:• Review of datasets generated so far, with updates reflected in the listing and short descriptionof the outputs and datasets in WATERUN Tasks.• Enhancements in FAIR data principles to ensure improved Findability, Accessibility,Interoperability, and Reusability.• Improved compliance with Open Science guidelines, reinforcing WATERUN’s commitment totransparent and accessible research.
DOI: 10.5281/zenodo.17184775
title: seeds-recognition

description: 17 categories of seed images for use in image recognition
DOI: 10.5281/zenodo.17184776
title: seeds-recognition

description: 17 categories of seed images for use in image recognition