cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/whit-c170-9990
title: Close-ups, etc., Mission Playhouse, Southern California, 1928

description: 19 photographs of costumed people, Southern California, 1928. "Subject: Close ups, etc.; Agency: Cha[rle]s Bird; Client: Mission Playhouse; Classifications: F, Costume Shots AB, Theatricals AB; Number of prints: 1 ea[ch], 1 ea[ch] - 8, 19, 18, 28 13 -, 1 #28; Size: 5x7, 8x10; Finish: double w. gl[ossy], 8x10, gl[ossy]; Year: 1928; Job: 812-21-92-B" -- on envelope.
DOI: 10.15468/dl.u2sdy8
title: Occurrence Download

description: A dataset containing 587 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chamaeleo senegalensis Daudin, 1802"
 ]
}

 The dataset includes 587 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060732-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-15184
title: Assured, J.M. Gaylord vs. Mrs. Maple, Southern California, 1931

description: 11 photographs of automobiles and roads, Southern California, 1931. "Subject: Assured, J.M. Gaylord vs. Mrs. Maple, San Marino and Whittier; Client: Pac[ific] Indemnity; Original Print Order: 1 ea[ch]; Size: 8x10; Finish: gl[ossy]; Year: 1931; Job: 4-1-7" -- on envelope front. "Name: Joe; 11 Original Photographs - Size: 8x10 @1.00: 11.00; 48 Miles: Transportation at 0.07: 3.36; 3 Hours: Time @2.00: 6.00; Extra Charges: E.J. Morgan" -- on envelope back.
DOI: 10.15468/dl.zldizr
title: Occurrence Download

description: A dataset containing 26886 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Miniopterus schreibersi (Kuhl, 1817)"
 ]
}

 The dataset includes 26886 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060733-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kvjz5j
title: Occurrence Download

description: A dataset containing 141808 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((129.38513 -55.15583,181.95252 -51.71492,187.26355 -34.99354,172.17482 26.57758,138.54249 45.1088,121.58338 35.53133,106.21831 33.81493,96.35156 32.10679,86.12723 35.01164,52.72764 45.95553,23.94938 60.53956,14.86959 61.01632,-12.64642 60.06281,-66.27567 54.55941,-118.57825 56.32335,-164.83129 46.43854,-173.16736 20.83634,-163.79268 -21.19911,-145.56117 -49.09009,-78.56508 -57.81077,-10.55971 -66.84451,129.38513 -55.15583))",
 "Geometry POLYGON((-175.79893 -55.80862,-136.39923 -43.64484,-163.95473 32.60285,-193.29247 48.16626,-211.29255 31.34316,-175.79893 -55.80862))"
 ]
 },
 "TaxonKey is Passifloraceae"
 ]
}

 The dataset includes 141808 records from 781 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0308580-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3fmysg
title: Occurrence Download

description: A dataset containing 147 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aria vexans (E.F.Warb.) Sennikov & Kurtto"
 ]
}

 The dataset includes 147 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011192-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nugavk
title: Occurrence Download

description: A dataset containing 9302 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Ants from the Paraguayan dry Chaco"
 ]
}

 The dataset includes 9302 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007615-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.53saxm
title: Occurrence Download

description: A dataset containing 601 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-143.09277 -16.62742,-29.90723 -16.62742,-29.90723 28.62742,-143.09277 28.62742,-143.09277 -16.62742))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Caluromys derbianus (Waterhouse, 1841)"
 ]
}

 The dataset includes 601 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0319878-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.di0pzp
title: Occurrence Download

description: A dataset containing 888351 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pica pica (Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 888351 records from 644 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007615-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nxgny4
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epidendrum orthopterum Hágsater & E.Santiago"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159405-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gpa535
title: Occurrence Download

description: A dataset containing 4982 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 12.1078184961654",
 "DecimalLongitude is less than 12.1108780493498",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 4982 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013852-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xx8yjy
title: Occurrence Download

description: A dataset containing 2607 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Alouatta palliata (Gray, 1849)",
 "Year 2000-2021"
 ]
}

 The dataset includes 2607 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0253860-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.esv8e6
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eriosyce fankhauseri (F.Ritter) P.C.Guerrero & Helmut Walter"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159406-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ox5gpg
title: Occurrence Download

description: A dataset containing 1077030 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DecimalLatitude is greater than 47.2898104663994",
 "DecimalLatitude is less than 48.5627432882402",
 "DecimalLongitude is greater than -125.040415371431",
 "DecimalLongitude is less than -122.853493737692"
 ]
}

 The dataset includes 1077030 records from 274 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007615-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48436/2qqyd-pc940
title: Data related to publication "Reproducibility crisis in isothermal amplification: Lessons from benchmarking LAMP assays"

description: General Information: This data is related to the publication "Reproducibility crisis in isothermal amplification: Lessons from benchmarking LAMP assays" by Piglmann L., Campostrini L., Sommer R., Kirschner A., Krska R., Farnleitner A.H., Kolm C. and Reischer G.H. (2025) submitted to Applied and Environmental Microbiology. The raw data of the analysed LAMP assays are split up into four files: "File 1: First Assessment", "File 2: Specificity Experiments", "File 3: Sensitivity Experiments", "File 4: LOD Experiments". 

In File 1 the raw data of the comparative assessment of nine LAMP assays via fluorescence monitoring are summarized. To this end, each assay was tested with a 1:10 dilution series of genomic DNA from P. aeruginosa type strain ATCC 10145, ranging from 100.000 to 100 genomic copies per reaction (gc/rxt), analysed in triplicates.

In File 2 the raw data of the specificity experiments of seven LAMP assays via fluorescence monitoring are summarized. For these experiments all LAMP assays were assessed with 19 non-target strains with a genomic DNA concentration of 1.000 gc/rxt and in triplicates. 

In File 3 the raw data of the sensivitiy assessment of three LAMP assays via fluorescence monitoring using 12 target strains (6 clinical isolates and 6 environmental isolates) are summarized. The strains were analysed with a genomic DNA concentration of 1.000 gc/rxt and in triplicates.

In File 4 the raw data of the Limit-of-Detection (LOD) experiments of two LAMP assays via fluorescence monitoring are summarized. For the LOD experiments the two remaining LAMP assays were tested using genomic DNA from three P. aeruginosa strains (type strain ATCC 10145, clinical isolate 1, environmental isolate 1). Two-fold serial dilutions were used for all three strains and each concentration was measured in 12 replicate reactions. The LOD of the first LAMP assay was determined with dilutions of the ATCC 10145 type strain ranging from 5.76x10^4 to 7.03 gc/rxt, the clinical isolate 1 from 9.60x10^2 to 1.88 gc/rxt and the environmental strain 1 from 2.80x10^3 to 2.73 gc/rxt. As for the second LAMP assay, ATCC 10145 was measured in 2-fold dilutions from 7.20x10^3 to 7.03 gc/rxt, the clinical isolate 1 from 9.60x10^2 to 0.94 gc/rxt and the environmental strain 1 from 1.40x10^3 to 0.68 gc/rxt.
DOI: 10.48436/mazvr-0mq36
title: Data related to publication "Reproducibility crisis in isothermal amplification: Lessons from benchmarking LAMP assays"

description: General Information: This data is related to the publication "Reproducibility crisis in isothermal amplification: Lessons from benchmarking LAMP assays" by Piglmann L., Campostrini L., Sommer R., Kirschner A., Krska R., Farnleitner A.H., Kolm C. and Reischer G.H. (2025) submitted to Applied and Environmental Microbiology. The raw data of the analysed LAMP assays are split up into four files: "File 1: First Assessment", "File 2: Specificity Experiments", "File 3: Sensitivity Experiments", "File 4: LOD Experiments". 

In File 1 the raw data of the comparative assessment of nine LAMP assays via fluorescence monitoring are summarized. To this end, each assay was tested with a 1:10 dilution series of genomic DNA from P. aeruginosa type strain ATCC 10145, ranging from 100.000 to 100 genomic copies per reaction (gc/rxt), analysed in triplicates.

In File 2 the raw data of the specificity experiments of seven LAMP assays via fluorescence monitoring are summarized. For these experiments all LAMP assays were assessed with 19 non-target strains with a genomic DNA concentration of 1.000 gc/rxt and in triplicates. 

In File 3 the raw data of the sensivitiy assessment of three LAMP assays via fluorescence monitoring using 12 target strains (6 clinical isolates and 6 environmental isolates) are summarized. The strains were analysed with a genomic DNA concentration of 1.000 gc/rxt and in triplicates.

In File 4 the raw data of the Limit-of-Detection (LOD) experiments of two LAMP assays via fluorescence monitoring are summarized. For the LOD experiments the two remaining LAMP assays were tested using genomic DNA from three P. aeruginosa strains (type strain ATCC 10145, clinical isolate 1, environmental isolate 1). Two-fold serial dilutions were used for all three strains and each concentration was measured in 12 replicate reactions. The LOD of the first LAMP assay was determined with dilutions of the ATCC 10145 type strain ranging from 5.76x10^4 to 7.03 gc/rxt, the clinical isolate 1 from 9.60x10^2 to 1.88 gc/rxt and the environmental strain 1 from 2.80x10^3 to 2.73 gc/rxt. As for the second LAMP assay, ATCC 10145 was measured in 2-fold dilutions from 7.20x10^3 to 7.03 gc/rxt, the clinical isolate 1 from 9.60x10^2 to 0.94 gc/rxt and the environmental strain 1 from 1.40x10^3 to 0.68 gc/rxt.
DOI: 10.15468/dl.v7zhee
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cichorium endivia",
 "Country is Bulgaria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 40 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016200-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29068614
title: Analysis of the Autophagy-related Gene NLRC4 in spinal cord injury

description: To investigate the role of the autophagy-related gene NLR Family CARD Domain Containing 4 (NLRC4) in spinal cord injury via bioinformatics methods, which may provide new targets for the diagnosis and treatment of spinal cord injury. This analysis is based on the GEO database dataset GSE151371. To identify potential autophagy-related genes involved in SCI, protein‒protein interaction (PPI) networks were analyzed. Immune microenvironment analysis (LM22) was performed via the CIBERSORTx database to determine the makeup of 22 immune cell types. Furthermore, a rat spinal cord injury model was generated, and the expression of selected autophagy-related genes was validated via immunofluorescence labeling and Western blotting. Disease enrichment analysis via the Metascape database revealed enrichment for diseases related to the spinal cord, inflammation, infection, and immunity, which aligns with the functional analysis results of previously identified genes. Through the PPI and autophagy-related genes, we identified NLRC4 within the key subnetwork of the PPI network, highlighting its significance as a key signature gene associated with SCI. NLRC4 expression was significantly increased in the three groups, which was correlated with the severity of SCI. In the rat SCI model, NLRC4 protein expression was significantly greater in the SCI group than in the sham group (<i>p</i> &lt; 0.001), confirming the validity of the model. Since NLRC4 is an important gene involved in the autophagy that leads to spinal cord damage, it can be utilized to illuminate the optimal approach to immunotherapy for individuals with SCI and uncover new targets for therapy.
DOI: 10.6084/m9.figshare.29068614.v1
title: Analysis of the Autophagy-related Gene NLRC4 in spinal cord injury

description: To investigate the role of the autophagy-related gene NLR Family CARD Domain Containing 4 (NLRC4) in spinal cord injury via bioinformatics methods, which may provide new targets for the diagnosis and treatment of spinal cord injury. This analysis is based on the GEO database dataset GSE151371. To identify potential autophagy-related genes involved in SCI, protein‒protein interaction (PPI) networks were analyzed. Immune microenvironment analysis (LM22) was performed via the CIBERSORTx database to determine the makeup of 22 immune cell types. Furthermore, a rat spinal cord injury model was generated, and the expression of selected autophagy-related genes was validated via immunofluorescence labeling and Western blotting. Disease enrichment analysis via the Metascape database revealed enrichment for diseases related to the spinal cord, inflammation, infection, and immunity, which aligns with the functional analysis results of previously identified genes. Through the PPI and autophagy-related genes, we identified NLRC4 within the key subnetwork of the PPI network, highlighting its significance as a key signature gene associated with SCI. NLRC4 expression was significantly increased in the three groups, which was correlated with the severity of SCI. In the rat SCI model, NLRC4 protein expression was significantly greater in the SCI group than in the sham group (<i>p</i> &lt; 0.001), confirming the validity of the model. Since NLRC4 is an important gene involved in the autophagy that leads to spinal cord damage, it can be utilized to illuminate the optimal approach to immunotherapy for individuals with SCI and uncover new targets for therapy.
DOI: 10.6084/m9.figshare.29100343
title: Insights into modifiable risk factors of migraine: a Mendelian randomization analysis

description: Increasing epidemiological evidence has reported that various factors are associated with migraine risk and subtypes. Nevertheless, definitive conclusions regarding whether the putative modifiable risk factors are causally related to the pathogenesis of migraine have not been drawn. Using single-nucleotide polymorphisms as instrumental variables, we conducted a two-sample Mendelian randomization (MR) analysis to investigate the causal effects of 38 modifiable factors, including dietary nutrients, lifestyle factors, cardiometabolic diseases, and associated traits, as well as reproductive characteristics and sex hormones, on the risk of migraine, migraine with aura (MA), and migraine without aura (MO). Subsequently, meta-analyses were performed to combine causal estimates from two independent genome-wide association studies. In the combined findings with multiple test correction, genetically predicted higher alcohol intake frequency (odds ratio [OR]: 1.25; 95% confidence interval [CI]: 1.12–1.40), lifetime smoking index (OR: 1.24; 95% CI: 1.08–1.42), insomnia (OR: 1.20; 95% CI: 1.17–1.24), long sleep duration (OR: 1.26; 95% CI: 1.07–1.50), and hypertension (OR: 1.76; 95% CI: 1.47–2.11) were causally linked to migraine incidence. Subgroup analyses revealed higher carbohydrate and sugar intake, alcohol consumption frequency, lifetime smoking index, insomnia, and hypertension causally increased susceptibility to MA, while later age at first birth (AFB) had a protective effect on MA risk. Meanwhile, the MR findings revealed a detrimental association between alcohol intake frequency, insomnia, hypertension, and early AFB and MO incidence. Overall, our study demonstrated various causal risk factors for migraine and its subtypes risk, providing insights into its pathogenesis and potential prevention strategies. Further research is needed to validate these findings and explore their clinical implications and underlying mechanisms.
DOI: 10.6084/m9.figshare.29100343.v1
title: Insights into modifiable risk factors of migraine: a Mendelian randomization analysis

description: Increasing epidemiological evidence has reported that various factors are associated with migraine risk and subtypes. Nevertheless, definitive conclusions regarding whether the putative modifiable risk factors are causally related to the pathogenesis of migraine have not been drawn. Using single-nucleotide polymorphisms as instrumental variables, we conducted a two-sample Mendelian randomization (MR) analysis to investigate the causal effects of 38 modifiable factors, including dietary nutrients, lifestyle factors, cardiometabolic diseases, and associated traits, as well as reproductive characteristics and sex hormones, on the risk of migraine, migraine with aura (MA), and migraine without aura (MO). Subsequently, meta-analyses were performed to combine causal estimates from two independent genome-wide association studies. In the combined findings with multiple test correction, genetically predicted higher alcohol intake frequency (odds ratio [OR]: 1.25; 95% confidence interval [CI]: 1.12–1.40), lifetime smoking index (OR: 1.24; 95% CI: 1.08–1.42), insomnia (OR: 1.20; 95% CI: 1.17–1.24), long sleep duration (OR: 1.26; 95% CI: 1.07–1.50), and hypertension (OR: 1.76; 95% CI: 1.47–2.11) were causally linked to migraine incidence. Subgroup analyses revealed higher carbohydrate and sugar intake, alcohol consumption frequency, lifetime smoking index, insomnia, and hypertension causally increased susceptibility to MA, while later age at first birth (AFB) had a protective effect on MA risk. Meanwhile, the MR findings revealed a detrimental association between alcohol intake frequency, insomnia, hypertension, and early AFB and MO incidence. Overall, our study demonstrated various causal risk factors for migraine and its subtypes risk, providing insights into its pathogenesis and potential prevention strategies. Further research is needed to validate these findings and explore their clinical implications and underlying mechanisms.
DOI: 10.15468/dl.h6srcs
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cichorium endivia",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016201-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cwdnbx
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Gonimbrasia anthinoides)"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016207-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z3rtm3
title: Occurrence Download

description: A dataset containing 12730 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Eurybia macrophylla"
 ]
}

 The dataset includes 12730 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016203-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.58053/mapbiomas/rd3xob
title: MapBiomas General “Handbook” - Algorithm Theoretical Basis Document (ATBD) - Collection 10 - Coastal Zone- Appendix

description: This document details the theoretical basis, justification, and methods applied to produce annual maps of land cover and land use (LCLU) specifically for Coastal Zone from 1985 to 2024 as part of MapBiomas Collection 10. Additionally, the document presents historical context and background information, a general description of the satellite imagery datasets, feature inputs, and details about the accuracy assessment method applied.
DOI: 10.58053/mapbiomas/5xzroq
title: MapBiomas General “Handbook” - Algorithm Theoretical Basis Document (ATBD) - Collection 10 - Urban areas- Appendix

description: This document details the theoretical basis, justification, and methods applied to produce annual maps of land cover and land use (LCLU) specifically for urban areas from 1985 to 2024 as part of MapBiomas Collection 10. Additionally, the document presents historical context and background information, a general description of the satellite imagery datasets, feature inputs, and details about the accuracy assessment method applied.