cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.f78r6/5
title: Predicted probability of occurrence of Pristipomoides filamentosus in the main Hawaiian Islands

description: The “Pristipomoides_filamentosus.zip” file contains two files: an asci raster grid file of predicted probability of occurrence of Pristipomoides filamentosus as a proportion (0.0-1.0) across the main Hawaiian Islands between 50 and 400 m depth (“Pristipomoides_filamentosus.txt”) and an associated projection file (Pristipomoides_filamentosus.prj). The asci file includes a six-line header section with data in 10315 columns (“ncols”) and 6394 rows (“nrows”) georegistered to 326589.18933012 and 2083866.5021671 at the lower left corner of the grid (“xllcorner”, “yllcorner”). Grid cell size is 60 m and no data values are -9999. Fish presence/absence data were collected from BRUV (BotCam) surveys collected between 2007-2015 and was modelled using boosted regression trees with various benthic habitat variables including depth, slope, rugosity, and bathymetric position index. The optimal model was used to predict Pristipomoides filamentosus probability of occurrence across the entire spatial domain. Further details on methodology and results are contained in Oyafuso et al. (2017) Habitat-based species distribution modelling of the Hawaiian deepwater snapper-grouper complex. Fisheries Research, 195:19-27. https://doi.org/10.1016/j.fishres.2017.06.011
DOI: 10.5061/dryad.f78r6/6
title: Predicted probability of occurrence of Pristipomoides sieboldii in the main Hawaiian Islands

description: The “Pristipomoides_sieboldii.zip” file contains two files: an asci raster grid file of predicted probability of occurrence of Pristipomoides sieboldii as a proportion (0.0-1.0) across the main Hawaiian Islands between 50 and 400 m depth (“Pristipomoides_sieboldii.txt”) and an associated projection file (Pristipomoides_sieboldii.prj). The asci file includes a six-line header section with data in 10315 columns (“ncols”) and 6394 rows (“nrows”) georegistered to 326589.18933012 and 2083866.5021671 at the lower left corner of the grid (“xllcorner”, “yllcorner”). Grid cell size is 60 m and no data values are -9999. Fish presence/absence data were collected from BRUV (BotCam) surveys collected between 2007-2015 and was modelled using boosted regression trees with various benthic habitat variables including depth, slope, rugosity, and bathymetric position index. The optimal model was used to predict Pristipomoides sieboldii probability of occurrence across the entire spatial domain. Further details on methodology and results are contained in Oyafuso et al. (2017) Habitat-based species distribution modelling of the Hawaiian deepwater snapper-grouper complex. Fisheries Research, 195:19-27. https://doi.org/10.1016/j.fishres.2017.06.011
DOI: 10.5061/dryad.f78r6/7
title: Predicted probability of occurrence of Pristipomoides zonatus in the main Hawaiian Islands

description: The “Pristipomoides_zonatus.zip” file contains two files: an asci raster grid file of predicted probability of occurrence of Pristipomoides zonatus as a proportion (0.0-1.0) across the main Hawaiian Islands between 50 and 400 m depth (“Pristipomoides_zonatus.txt”) and an associated projection file (Pristipomoides_zonatus.prj). The asci file includes a six-line header section with data in 10315 columns (“ncols”) and 6394 rows (“nrows”) georegistered to 326589.18933012 and 2083866.5021671 at the lower left corner of the grid (“xllcorner”, “yllcorner”). Grid cell size is 60 m and no data values are -9999. Fish presence/absence data were collected from BRUV (BotCam) surveys collected between 2007-2015 and was modelled using boosted regression trees with various benthic habitat variables including depth, slope, rugosity, and bathymetric position index. The optimal model was used to predict Pristipomoides zonatus probability of occurrence across the entire spatial domain. Further details on methodology and results are contained in Oyafuso et al. (2017) Habitat-based species distribution modelling of the Hawaiian deepwater snapper-grouper complex. Fisheries Research, 195:19-27. https://doi.org/10.1016/j.fishres.2017.06.011
DOI: 10.5061/dryad.fc10f/1
title: Ontogeny Min Freq Zollinger et al 2017

description: Mean minimum frequency of each song type sung by each bird in the two treatment groups, with mean minimum frequencies of the 9 tutor songs.
DOI: 10.5061/dryad.fc10f/3
title: Adult Plasticity 2 Zollinger et al 2017

description: Minimum frequencies of all song types sung during 3, randomly selected 5 minute song bouts, repeated in both noise treatments
DOI: 10.5061/dryad.fc10f/4
title: Adult Plasticity 3 Zollinger et al 2017

description: Peak frequency and song amplitude in the presence and absence of noise playback in wild caught adults.
DOI: 10.5061/dryad.ff10n/1
title: Allometry and ANOVAs

description: R script for the Bayesian phylogenetic mixed models of allometry and mean differences in egg size and body size
DOI: 10.5061/dryad.ff10n/2
title: Killidata - egg size and body size

description: Data on egg size and body size from the killifish database KilliData used in the analyses
DOI: 10.5061/dryad.fs57v/1
title: Gangloffetal2017_Data

description: Data file associated with Gangloff et. al 2017, "Among-individual heterogeneity in maternal behaviour and physiology affects reproductive allocation and offspring life-history traits in the garter snake Thamnophis elegans" published in Oikos (doi: 10.1111/oik.04204)
DOI: 10.5061/dryad.g2fm2/1
title: Hudspith et al_Table1

description: Table 1. Summary of all taxa tested under ambient atmospheric oxygen conditions (21 vol. % pO2). Calorimetry test information along with an image analysis determined %charcoal left in the remaining ash/char residue post-burn are presented. Species are grouped according to growth habit.
DOI: 10.5061/dryad.g2fm2/2
title: Hudspith et al Table 2

description: Table 2. Summary of the fifteen species tested under superambient atmospheric oxygen conditions (26 vol. % pO2). Calorimetry test information along with an image analysis determined %charcoal left in the remaining ash/char residue post-burn are presented. Species are grouped according to growth habit.
DOI: 10.5061/dryad.g2fm2/3
title: Supplemental Fig1

description: Figure 1. Podocarpus salignus dead foliage ash/char (Fig. 2E) illustrating the stages of image processing used to determine charcoal percentages. (A) Histogram values obtained for all pixel values in the 8 bit greyscale photograph. (B) Image manually thresholded to a greyscale value of 50 to highlight the charcoal in the image. (C) Default threshold applied to the whole image to separate the background from the ash/char sample and to derive a maximum ash greyscale value.
DOI: 10.5061/dryad.gn001/30
title: transport_data_dataset_2_part_28

description: Dataset 2, Part 28: transport data for mp_id from 861906 to 1006278
DOI: 10.5061/dryad.k0gq6/62
title: E_jifia_36.fastq

description: Individual fastq file from the genotyping by sequencing dataset.
DOI: 10.5061/dryad.k0gq6/63
title: E_mexicaria_433.fastq

description: Individual fastq file from the genotyping by sequencing dataset.
DOI: 10.5061/dryad.k0gq6/64
title: E_mexicaria_434.fastq

description: Individual fastq file from the genotyping by sequencing dataset.
DOI: 10.5061/dryad.k0gq6/65
title: E_multistrigaria_70.fastq

description: Individual fastq file from the genotyping by sequencing dataset.
DOI: 10.5061/dryad.k0gq6/66
title: E_myrrha_380.fastq

description: Individual fastq file from the genotyping by sequencing dataset.
DOI: 10.5061/dryad.k0gq6/67
title: E_nigrinota_35.fastq

description: Individual fastq file from the genotyping by sequencing dataset.
DOI: 10.5061/dryad.k0gq6/68
title: E_nr_catana_11.fastq

description: Individual fastq file from the genotyping by sequencing dataset.
DOI: 10.5061/dryad.k0gq6/69
title: E_nr_catana_14.fastq

description: Individual fastq file from the genotyping by sequencing dataset.
DOI: 10.5061/dryad.kv67m/1
title: Draft genome assembly for the parsnip webworm Depressaria pastinacella

description: Genomic DNA from adult Depressaria pastinacella (parsnip webworm) moth was extracted. The W.M. Keck Center for Comparative and Functional Genomics at the University of Illinois at Urbana-Champaign generated the following libraries for sequencing: 180-bp and 1-kb insert shotgun libraries from a single male moth and 5-kb, 10-kb and 20-kb insert mate-pair libraries. The 180-bp and 1-kb insert shotgun libraries were prepared with Illumina's TruSeq DNAseq Sample Prep Kit. The 5-kb mate-pair library was prepared similarly except a custom linker was ligated between the read-ends to facilitate mate-pair recovery. The 10- and 20-kb insert mate-pair libraries were prepared with Illumina’s Nextera Mate-Pairs Sample Prep Kit. All libraries were sequenced for 100 cycles on a HiSeq2000 using the TruSeq SBS Sequencing Kit v.3. Data were analyzed with pipeline version 1.8.  The custom 5-kb and Nextera 10-kb and 20-kb mate-pair libraries were filtered for reads containing properly-oriented reads of the appropriate insert size and uniqueness. Raw Illumina reads were trimmed at the 5’ and 3’ ends for nucleotide-bias and low-quality bases using the FASTX Toolkit (http://hannonlab.cshl.edu/fastx_toolkit/). Trimmed reads were error-corrected by Quake counting 19-mers. SOAPdenovo v2.04 (Luo et al. 2012), was employed with K=49 to assemble the 180-bp insert library reads followed by scaffolding with iteratively longer insert mate-pair libraries and use of GapCloser v1.12 (Luo et al. 2012) to close gaps generated in the scaffolding process.
DOI: 10.5061/dryad.mr16q/2
title: deer_wide

description: deer detection data
DOI: 10.5061/dryad.mr16q/3
title: macaque_wide

description: Macaque detection data
DOI: 10.5061/dryad.mr16q/4
title: pig_wide

description: pig detection data
DOI: 10.5061/dryad.mr16q/5
title: sampcovs_camhours_wide

description: Sampling covariate - camera hours
DOI: 10.5061/dryad.mr16q/6
title: site_covs

description: Site covariates
DOI: 10.5061/dryad.n26nd/3
title: Whole specimen images of Acer rubrum

description: Images of herbarium specimens of Acer rubrum used for studying leaf micromorphology. Also, images of herbarium specimens representative of taxonomically important macromorphological traits in the species.
DOI: 10.5061/dryad.n26nd/4
title: Whole specimen images of Acer laurinum

description: Images of herbarium specimens of Acer laurinum used for studying leaf micromorphology. Also, images of herbarium specimens representative of taxonomically important macromorphological traits in the species.
DOI: 10.5061/dryad.n26nd/5
title: Whole specimen images of Acer pycnanthum

description: Images of herbarium specimens of Acer rubrum used for studying leaf micromorphology. Also, images of herbarium specimens representative of taxonomically important macromorphological traits in the species.
DOI: 10.5061/dryad.n26nd/6
title: Whole specimen images of Acer saccharinum

description: Images of herbarium specimens of Acer saccharinum used for studying leaf micromorphology. Also, images of herbarium specimens representative of taxonomically important macromorphological traits in the species.
DOI: 10.5061/dryad.n2k66/1
title: IA_LDS1990-2013_Iscap

description: Ixodes scapularis, blacklegged tick specimens submitted to the Iowa Lyme Disease Surveillance Program 1990-2013, anonymized. Field Descriptions: "Log"=sample ID key; "Collected"=date of collection; "WOTY"=week of the year collected; "Received"=date on which sample was received; "Species"= tick species, all are Ixodes scapularis; "Stage"=life stage, F=female, M=male, N=nymph, L=larva(e); "Bloodfed?"=denotes if the tick appeared to have fed, Y or N; "Host"=host animal; "Infected?"=denotes if the tick tested positive for Borrelia burgdorferi, Y or N; "County"=IA county from which tick originated, OOS means "out of state"; "Count"=absolute number of in-state ticks submitted; "Event Count"=number of tick submission events, different life stages counted as separate submission events.
DOI: 10.5061/dryad.p6646/1
title: root biomass per plot per layer in 2012 and 2014

description: Root biomass was sampled to a depth of 40 cm and separated into five depth layers in the Trait-based biodiversity experiment in Jena, Germany, in 2012 and 2014. This file contains total root biomass per soil layer per plot per year. A description of each variable is included on a separate sheet called ‘metadata’ in the file.
DOI: 10.5061/dryad.p6646/2
title: species-specific root biomass per plot per layer in 2012 and 2014

description: Root biomass was sampled to a depth of 40 cm and separated into five depth layers in the Trait-based biodiversity experiment in Jena, Germany, in 2012 and 2014. This file contains root biomass per species per layer per plot per year. A description of each variable is included on a separate sheet called ‘metadata’ in each file.
DOI: 10.5061/dryad.p6646/3
title: Plot-level data of root biomass and variables derived thereof

description: Root biomass was sampled to a depth of 40 cm and separated into five depth layers in the Trait-based biodiversity experiment in Jena, Germany, in 2012 and 2014. This data file contains plot-level data of root biomass (averaged over the five depth layers) and calculated variables based on root biomass. A description of each variable is included on a separate sheet called ‘metadata’ in each file.
DOI: 10.5061/dryad.sp012/6
title: Readme
DOI: 10.5061/dryad.t2q82/1
title: Dryad_Table1_DayWarming

description: Growth, biomass allocation, and physiology data for 4 sapling mesocosm day warming experiment.
DOI: 10.5061/dryad.t2q82/2
title: Dryad_Table2_NightWarming

description: Growth, biomass allocation, physiology and foliar carbohydrate data from 3 sapling nighttime warming experiments
DOI: 10.5061/dryad.t6t0q/1
title: Bacteria fasta files

description: File containing demultiplexed bacteria 16S rRNA gene (107f-530r) fasta files for individual animals. Barcodes, forward and reverse primer sequences are trimmed. Primer sequences and metadata for each sample are provided in the file 'Sequence metadata.xlsx', that is also part of this Dryad data package.
DOI: 10.5061/dryad.t6t0q/2
title: Archaea fasta files

description: File containing demultiplexed archaea 16S rRNA gene (V9) fasta files for individual animals. Barcodes, forward and reverse primer sequences are trimmed. Primer sequences and metadata for each sample are provided in the file 'Sequence metadata.xlsx', that is also part of this Dryad data package.
DOI: 10.5061/dryad.t6t0q/3
title: Ciliate protozoa fasta files

description: File containing demultiplexed ciliate protozoa 18S rRNA gene (316f-539r) fasta files for individual animals. Barcodes, forward and reverse primer sequences are trimmed. Primer sequences and metadata for each sample are provided in the file 'Sequence metadata.xlsx', that is also part of this Dryad data package.
DOI: 10.5061/dryad.t6t0q/4
title: Fungi fasta files

description: File containing demultiplexed anaerobic fungi ITS1 region fasta files for individual animals. Barcodes, forward and reverse primer sequences are trimmed. Primer sequences and metadata for each sample are provided in the file 'Sequence metadata.xlsx', that is also part of this Dryad data package.
DOI: 10.5061/dryad.t6t0q/5
title: Sequence metadata
DOI: 10.5061/dryad.tr3d8/1
title: Characidium filtered RADtags

description: Fasta file containing the sequences of the 9,863 final filtered Radtags (biallelic SNPs with a minimum depth of 10 reads and genotyped in at least 28 individuals)
DOI: 10.17632/ngxjyhxrb5.2
title: Data for: The development of high strength brazing technique for Ti-6Al-4V using TiZrCuNi amorphous filler

description: This data is about the interface microstructure and the DIC analysis of the strain for the brazing samples.
DOI: 10.5061/dryad.1223s/1
title: Compounds information
DOI: 10.5061/dryad.1223s/2
title: Gh4CL gene-CDS
DOI: 10.5061/dryad.125g5/1
title: Falcone_ZcPaperMetaData

description: This folder contains the R code for the GAMM, as well as all the supporting data associated with the manuscript.
DOI: 10.5061/dryad.1r2b0/1
title: O'Connor_et_al_2017_Data

description: Tb data from free-ranging rufous-cheeked and freckled nightjars
DOI: 10.5061/dryad.22h7c/2
title: 2017 -pSS and acute pancreatitis
DOI: 10.5061/dryad.270gs/1
title: Raw data and results files
DOI: 10.5061/dryad.43j31/1
title: Data for DRYAD
DOI: 10.5061/dryad.47p7c/1
title: Data for Keiser et al 2017 - The index case is not enough - Journal of Animal Ecology

description: Data for three experiments testing group-wide transmission of cuticular bacteria (first tab), transmission along daisy-chain and radial networks, and social network metrics across groups of different sizes.
DOI: 10.5061/dryad.47pf0/7
title: 2013_Tb_Files

description: ZIP file containing body temperature data for arctic ground squirrels during the 2012-13 hibernation season. The ID in the file name is based on the eartag at the time of download - this can be matched to the unique ID from the parturtion date or arousal date files (eartag # can change across years).
DOI: 10.5061/dryad.47pf0/8
title: 2014_Tb_Files

description: ZIP file containing body temperature data for arctic ground squirrels during the 2013-14 hibernation season. The ID in the file name is based on the eartag at the time of download - this can be matched to the unique ID from the parturtion date or arousal date files (eartag # can change across years).
DOI: 10.5061/dryad.47pf0/9
title: 2015_Tb_Files

description: ZIP file containing body temperature data for arctic ground squirrels during the 2014-15 hibernation season. The ID in the file name is based on the eartag at the time of download - this can be matched to the unique ID from the parturtion date or arousal date files (eartag # can change across years). Site data is found in the parturition and arousal data files.
DOI: 10.5061/dryad.5f4g6/1
title: Data S1

description: R script for simulations. Simulations of fixed- and random-effects meta-analysis using alternative estimators: one-sample mean, two-sample Hedges' g, and two-sample lnR, for comparison of performance by inverse-variance weighting and inverse-adjusted-variance weighting.
DOI: 10.5061/dryad.5f4g6/2
title: Data S2

description: R script for calculating mean-adjusted error variance. Finds the mean-adjusted study variance for all the primary studies contributing to a meta-analysis, for a one-sample mean, or two-sample log response ratio, or or two-sample Hedges' g.
DOI: 10.5061/dryad.5k1f6/1
title: Blossey et al - Common garden emergence
DOI: 10.5061/dryad.5k1f6/2
title: Blossey et al - Laboratory germination
DOI: 10.5061/dryad.64g86/1
title: Differentially expressed genes in NSZ and BTx623

description: List of deferentially expressed genes between BTx623 and NSZ subjected to chilling and optimal temperature treatments
DOI: 10.5061/dryad.64g86/2
title: Lipidome of US and Chinese sorghum accessions

description: Seedling lipid profile of US (BTx623 and RTx430) and Chinese (Niu Shenz Zui, Kaoliang, Hong Ke Zi, and Shan Qui Red) accessions subjected to optimal and chilling temperatures
DOI: 10.5061/dryad.64g86/3
title: MapMan Analysis - Chilling Stress Pathways

description: MapMan analysis of BTx623 and NSZ seedling transcriptome subjected to chilling and optimal temperature.
DOI: 10.5061/dryad.64g86/4
title: Transcriptome HTSeq Counts

description: HTSeq counts data of BTx623 and NSZ seedlings subjected to chilling and optimal temperatures individually. RNA-Seq reads were aligned to sorghum reference genome v3.1
DOI: 10.5061/dryad.64g86/5
title: US and Chinese accessions metabolome data

description: Metabolome data of BTx623, HKZ, and Kaoliang accessions under optimal and chilling temperatures.
DOI: 10.5061/dryad.7005f/1
title: Virtual Models and Raw Data

description: Zip file containing (a) Raw serial-grinding tomograms (slice-images) for all datasets used in publication, and (b) VAXML/STL format 3D models of all datasets used in publication.
DOI: 10.5061/dryad.75m46/2
title: Study Results - ClinicalTrials NCT00712348

description: Results from Study PB-06-002, ‘A Phase 3 Multicenter, Open-label, Switchover Trial to Assess the Safety and Efficacy of Plant Cell Expressed Recombinant Human Glucocerebrosidase (Taliglucerase alfa) in Patients with GD Treated with Imiglucerase (Cerezyme®) Enzyme Replacement Therapy.’ Adult and pediatric patients (N=26 and 5, respectively) with a total treatment duration of 9 months (study started on December 2008 and ended January 2013). Results available at ClinicalTrials.gov: NCT00712348. Please acknowledge the National Library of Medicine (NLM) in subsequent use of this document.
While using these results please cite the study in PLOS One and acknowledge the National Library of Medicine.
DOI: 10.5061/dryad.75m46/3
title: Study Results - ClinicalTrials NCT01132690

description: Results for Study PB-06-005, ‘A Multicenter, Double-blind, Randomized Safety and Efficacy Study of Two Dose Levels of TGA in Pediatric patients with Gaucher Disease’. Pediatric patients (N=11) with a total treatment duration of 12 months. (study started on August 2010 and ended July 2012). Results available at ClinicalTrials.gov: NCT01132690. Please acknowledge the National Library of Medicine (NLM) in subsequent use of this document.
While using these results please cite the study in PLOS One and acknowledge the National Library of Medicine.
DOI: 10.5061/dryad.77gr3/1
title: Volunteer Motivators Dataset

description: The data file contains the socio-demographic variables of the respondents and their motivators which were labelled into recurring themes (codes).
DOI: 10.5061/dryad.8k56k/1
title: Smiley_ESM_Figures and Tables

description: Supplementary Tables 1 and 2, Supplementary Figures 1-15, link to R scripts
DOI: 10.5061/dryad.8k56k/2
title: Smiley_DiversityMetrics_Functions_RScript

description: R script with functions for the calculation of diversification metrics
DOI: 10.5061/dryad.c57t1/3
title: OTU table

description: OTU table of bacterial OTUs from Illumina sequencing of ephippia.
DOI: 10.5061/dryad.c57t1/4
title: Map file

description: Descriptions of sequenced samples
DOI: 10.5061/dryad.c57t1/5
title: p303_eph_OTU_ab5_id97

description: FASTA file of consensus 16S sequences
DOI: 10.5061/dryad.c57t1/6
title: Tree file

description: Tree file associated with consensus 16S sequences
DOI: 10.5061/dryad.ct3s3/3
title: NBDA code smooth-coated otter

description: This is the Network-Based Diffusion Analysis code to be used with the AICsmoothInput.csv file in R to run the NBDA.
DOI: 10.5061/dryad.ct3s3/4
title: Otter social learning Supplementary Video1

description: Video 1: Smooth-coated otters are presented with task 5 (see main text Fig. 1)
DOI: 10.5061/dryad.ct3s3/5
title: Otter social learning Supplementary Video2
DOI: 10.5061/dryad.ct3s3/6
title: Otter social learning Supplementary Video3

description: Asian short-clawed otters are presented with task 4 (see main text Fig. 2)
DOI: 10.5061/dryad.d83md/2
title: Bagaria_JECOL_2017_Individual_level_data

description: Data regarding Aphyllanthes monspeliensis individual plants' vegetative and reproductive performance in 19 sites, and site and local-habitat characteristics. Part of this data was collected in the field and part obtained using Geographical Information Systems.
DOI: 10.5061/dryad.d83md/3
title: Bagaria_JECOL_2017_Belowground_individual_level_data

description: Data regarding Aphyllanthes monspeliensis belowground individual plant performance in 6 sites, and local-habitat characteristics. Part of this data was measured in the laboratory and part obtained using Geographical Information Systems.
DOI: 10.5061/dryad.d83md/4
title: Bagaria_JECOL_2017_Precipitation_data

description: Late-spring and summer precipitation (May, June and July) in the study area, from a meteorological station in the area.
DOI: 10.5061/dryad.d83md/5
title: README

description: Data package overview including contents, variable names and descriptions, and contact information.
DOI: 10.5061/dryad.fc10f/2
title: Adult Plasticity 1 Zollinger et al 2017

description: Minimum frequencies of each song type for birds singing in different noise treatments, after background noise treatments changed in adulthood.