cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.2gvnjz
title: Occurrence Download

description: A dataset containing 2767 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Geomys breviceps Baird, 1855"
 ]
}

 The dataset includes 2767 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0218150-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fzu5s8
title: Occurrence Download

description: A dataset containing 22845 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hypsypops rubicundus (Girard, 1854)",
 "Year 1950-2023"
 ]
}

 The dataset includes 22845 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130268-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7sctx2
title: Occurrence Download

description: A dataset containing 106 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-7.05322 36.01652,1.12061 36.01652,1.12061 39.38809,-7.05322 39.38809,-7.05322 36.01652))",
 "HasGeospatialIssue is false",
 "TaxonKey is Limonium malacitanum B.Diez"
 ]
}

 The dataset includes 106 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011161-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jg2arw
title: Occurrence Download

description: A dataset containing 4031 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chiloglottis valida D.L.Jones"
 ]
}

 The dataset includes 4031 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0218160-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7gqa3j
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Epicrionops parkeri (Dunn, 1942)"
 ]
}

 The dataset includes 9 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0414255-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u9ts3d
title: Occurrence Download

description: A dataset containing 365 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "Country is Pakistan",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Platanista gangetica minor Owen, 1853",
 "Year 1990-2023"
 ]
}

 The dataset includes 365 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130270-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5kz5mm
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Metapenaeus stebbingi Nobili, 1904"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0422098-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ppa6k7
title: Occurrence Download

description: A dataset listing the 98243 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is Malaysia",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 98243 records were derived from 1673 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0199075-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.otvcvu
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carassius auratus auratus",
 "Country is China",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 22 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001738-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m4rgky
title: Occurrence Download

description: A dataset containing 1330 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Sea spiders (Arthropoda, Pycnogonida) from ten recent research expeditions to the Antarctic Peninsula, Scotia Arc and Weddell Sea - data"
 ]
}

 The dataset includes 1330 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056374-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x1ibpo
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "TaxonKey is Procyon lotor (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 44 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034324-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5nchm5
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aphelandra albert-smithii Leonard"
 ]
}

 The dataset includes 28 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038206-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qpznb3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Podocarpus indonesiensis de Laub. & Silba",
 "DecimalLatitude is greater than or equal to -90",
 "DecimalLongitude is greater than or equal to -180"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028912-191105090559680/datasets/export for details.
DOI: 10.15468/dl.73e3hk
title: Occurrence Download

description: A dataset containing 5402 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "TaxonKey is Lutra lutra (Linnaeus, 1758)"
 ]
}

 The dataset includes 5402 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062320-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.re2kny
title: Occurrence Download

description: A dataset containing 964 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Heterodon nasicus Baird & Girard, 1852",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 964 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005084-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.26fzdu
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Human Observation"
 ]
 },
 "Country is Nepal",
 {
 "or" : [
 "License is CC-BY 4.0",
 "License is CC-BY-NC 4.0",
 "License is CC0 1.0"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Clamator jacobinus (Boddaert, 1783)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001739-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4dys9n
title: Occurrence Download

description: A dataset containing 3645 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "TaxonKey is one of (Dasypus novemcinctus Linnaeus, 1758)"
 ]
}

 The dataset includes 3645 records from 166 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0362043-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mbw9pq
title: Occurrence Download

description: A dataset containing 504 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((14.13208 58.8721,17.03247 58.8721,17.03247 59.90143,14.13208 59.90143,14.13208 58.8721))",
 "HasGeospatialIssue is false",
 "TaxonKey is Lissotriton vulgaris (Linnaeus, 1758)"
 ]
}

 The dataset includes 504 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077923-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3dc27y
title: Occurrence Download

description: A dataset containing 261962 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erigeron canadensis L."
 ]
}

 The dataset includes 261962 records from 987 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0332173-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0hn7uo
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Callithrix geoffroyi (Humboldt, 1812)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 18 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001739-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.af599m
title: Occurrence Download

description: A dataset containing 300 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allium erdelii Zucc."
 ]
}

 The dataset includes 300 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108359-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hpvm46
title: Occurrence Download

description: A dataset containing 140275 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Continent is North America",
 "Continent is South America"
 ]
 },
 "Year 1950-2020",
 "Geometry POLYGON((-138.86719 -58.44773,-22.85156 -58.44773,-22.85156 37.16032,-138.86719 37.16032,-138.86719 -58.44773))",
 "HasCoordinate is true",
 "TaxonKey is Phyllostomidae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 140275 records from 125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007176-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h6m2dm
title: Occurrence Download

description: A dataset containing 1509 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-180 0,180 0,180 90,-180 90,-180 0))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Platypus cylindrus (J.C.Fabricius, 1792)",
 "Year 1000-2021"
 ]
}

 The dataset includes 1509 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042029-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wc42we
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Month is greater than or equal to January",
 "Country is Australia",
 "TaxonKey is Orthoptera"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001742-150721130643939/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sksb2s
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Lithuania",
 "TaxonKey is Hedera helix L."
 ]
}

 The dataset includes 69 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108365-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hvsphh
title: Occurrence Download

description: A dataset containing 143 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cardiocondyla obscurior Wheeler, 1929"
 ]
}

 The dataset includes 143 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081165-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9unamw
title: Occurrence Download

description: A dataset containing 5852 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-180 0,180 0,180 90,-180 90,-180 0))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Vulpes lagopus (Linnaeus, 1758)",
 "Year 1000-2021"
 ]
}

 The dataset includes 5852 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042024-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rwypnr
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Costa Rica",
 "TaxonKey is Leopardus wiedii (Schinz, 1821)"
 ]
}

 The dataset includes 17 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001743-171020152545675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cfpv8y
title: Occurrence Download

description: A dataset containing 2943 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "InstitutionCode is instituto de investigación de recursos biológicos alexander von humboldt (iavh)",
 "InstitutionCode is clo",
 "InstitutionCode is cm",
 "InstitutionCode is amnh",
 "InstitutionCode is fmnh",
 "InstitutionCode is mcz",
 "InstitutionCode is usnm",
 "InstitutionCode is icn",
 "InstitutionCode is smf",
 "InstitutionCode is ansp"
 ]
 },
 "TaxonKey is Atlapetes semirufus (Boissonneau, 1840)"
 ]
}

 The dataset includes 2943 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021598-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hivwde
title: Occurrence Download

description: A dataset containing 572 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Somniosus microcephalus (Bloch & Schneider, 1801)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 572 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012647-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n57y8j
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cryptotriton monzoni (Campbell & Smith, 1998)"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002858-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vm79vf
title: Occurrence Download

description: A dataset containing 2698 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Apera interrupta (L.) P.Beauv.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2698 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001744-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11203692
title: Optimising recovery of DNA from minimally-invasive sampling methods: efficacy of buccal swabs, preservation strategy and DNA extraction approaches for amphibian studies_Dataset_Rscript

description: Datasets and Rscript associated with paper draft titled: "Optimising recovery of DNA from minimally-invasive sampling methods: efficacy of buccal swabs, preservation strategy and DNA extraction approaches for amphibian studies".

 

Abstract: Studies in evolution, ecology and conservation are increasingly based on genetic and genomic inferences. With increased focus on molecular approaches, ethical concerns about destructive or more invasive techniques need to be considered, with a push for minimally invasive sampling to be optimised. Buccal swabs have been increasingly used to collect DNA in a number of taxa, including amphibians.  However, DNA yield and purity from swabs is often low, limiting its use. In this study we compare different types of swabs, preservation method and storage, and DNA extraction technique in three case studies to assess the optimal approach for recovering DNA in anurans. Out of the five different types of swab that we tested, Isohelix MS-02 and Rapidry swabs generated higher DNA yields than other swabs. When comparing storage buffers, ethanol is a better preservative than a non-alcoholic alternative. Dried samples resulted in similar or better final DNA yields than ethanol-fixed samples if kept cool. DNA extraction via a Qiagen™ DNeasy Blood and Tissue Kit and McHale’s salting out extraction method resulted in similar DNA yields but the Qiagen™ kit extracts contained less contamination. We also found that samples produce better DNA recovery if frozen as soon as possible after collection. We provide recommendations for sample collection and extraction under different conditions, including budgetary considerations, size of individual sampled, access to cold storage facilities, and DNA extraction methodology. Maximising efficacy of all of these factors for better DNA recovery will allow buccal swabs to be used for genetic and genomic studies in a range of vertebrates.
DOI: 10.5281/zenodo.11203693
title: Optimising recovery of DNA from minimally-invasive sampling methods: efficacy of buccal swabs, preservation strategy and DNA extraction approaches for amphibian studies_Dataset_Rscript

description: Datasets and Rscript associated with paper draft titled: "Optimising recovery of DNA from minimally-invasive sampling methods: efficacy of buccal swabs, preservation strategy and DNA extraction approaches for amphibian studies".

 

Abstract: Studies in evolution, ecology and conservation are increasingly based on genetic and genomic inferences. With increased focus on molecular approaches, ethical concerns about destructive or more invasive techniques need to be considered, with a push for minimally invasive sampling to be optimised. Buccal swabs have been increasingly used to collect DNA in a number of taxa, including amphibians.  However, DNA yield and purity from swabs is often low, limiting its use. In this study we compare different types of swabs, preservation method and storage, and DNA extraction technique in three case studies to assess the optimal approach for recovering DNA in anurans. Out of the five different types of swab that we tested, Isohelix MS-02 and Rapidry swabs generated higher DNA yields than other swabs. When comparing storage buffers, ethanol is a better preservative than a non-alcoholic alternative. Dried samples resulted in similar or better final DNA yields than ethanol-fixed samples if kept cool. DNA extraction via a Qiagen™ DNeasy Blood and Tissue Kit and McHale’s salting out extraction method resulted in similar DNA yields but the Qiagen™ kit extracts contained less contamination. We also found that samples produce better DNA recovery if frozen as soon as possible after collection. We provide recommendations for sample collection and extraction under different conditions, including budgetary considerations, size of individual sampled, access to cold storage facilities, and DNA extraction methodology. Maximising efficacy of all of these factors for better DNA recovery will allow buccal swabs to be used for genetic and genomic studies in a range of vertebrates.
DOI: 10.15468/dl.nmqsfq
title: Occurrence Download

description: A dataset containing 2844 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Glossophaga commissarisi Gardner, 1962"
 ]
}

 The dataset includes 2844 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024765-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rkbds3
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Liposcelis decolor (Pearman, 1925))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 70 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024768-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.msqvda
title: Occurrence Download

description: A dataset containing 41095 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "OccurrenceStatus is Present",
 "TaxonKey is Chilopoda"
 ]
}

 The dataset includes 41095 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024767-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.