cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/92t30-34p42
title: Myxococcus xanthus delta-pilB&T

description: Grid box YWC128Strain SA4300
description: <strong>Tilt Series Date:</strong> 2015-04-22</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Myxococcus xanthus</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain form Lotte Sogaard-Andersen</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown 2 days in 220 rpm shaking CTT medium at 30 degrees without antibiotics. OD600=0.8</p>
<strong>Sample Preparation:</strong> Vitrobot (MK iv) settings: 100% humidity, 3µl sample, 10 mg/ml BSA treated gold. Blot force 6, blot time 2.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-04-22-16/rawdata/</p>20150422_YWC128_20018.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-04-22-16/rawdata/20150422_YWC128_20018.mrc"
        > <i class="download icon"></i> Download </a></p>

        20150422_YWC128_20018_part121_46.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-04-22-16/3dimage_54655/20150422_YWC128_20018_part121_46.rec"
        > <i class="download icon"></i> Download </a></p>

        20150422_YWC128_20018_part121_46.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-04-22-16/3dimage_54716/20150422_YWC128_20018_part121_46.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/mzvre-c4212
title: V. cholerae RT4236 (stationary)

description: Classical strain with ctxA deletion.Cell harbors pMT5 plasmid (inducible toxT).
description: <strong>Tilt Series Date:</strong> 2015-05-11</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O395-N1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> SIRT</p>
<strong>Collaborators and Roles:</strong> Strain from Ronald K. Taylor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Overnight cultures of Vibrio cholerae O395 NI pMT5 grown in LB pH 6.5, 1 mM IPTG and 100 ug/mL ampicilin</p>
<strong>Sample Preparation:</strong> Vitrobot (MK iv) settings: 100% humidity, 3µl sample, 10 mg/ml BSA treated gold. Blot force 6, blot time 2.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 finder.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-05-11-60/3dimage_73318/</p>20150511_AK07_10060_SIRT_2K.rec,  Reconstruction (Pixel Size 0.0 nm), 5.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-05-11-60/3dimage_73318/20150511_AK07_10060_SIRT_2K.rec"
        > <i class="download icon"></i> Download </a></p>

        20150511_AK07_10060.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-05-11-60/rawdata/20150511_AK07_10060.mrc"
        > <i class="download icon"></i> Download </a></p>

        20150511_AK07_10060_SIRT_2K.rec~,  5.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-05-11-60/file_16619/20150511_AK07_10060_SIRT_2K.rec~"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.6084/m9.figshare.26082373
title: (01) SCIGEN-Generated Materials (Raw Output)

description: A total of <b>7.86 million materials</b> generated by the SCIGEN model without pre-screening. Each ZIP folder contains a batch of CIF files.<br>Material IDs use the following lattice abbreviations:<br>Triangular: <code>tri</code>Honeycomb: <code>hon</code>Kagome: <code>kag</code>Square: <code>sqr</code>Elongated triangular: <code>elt</code>Snub square: <code>sns</code>Truncated square: <code>tsq</code>Small rhombitrihexagonal: <code>srh</code>Snub hexagonal: <code>snh</code>Truncated hexagonal: <code>trh</code>Great rhombitrihexagonal: <code>grt</code>Lieb: <code>lieb</code>
DOI: 10.6084/m9.figshare.26082373.v3
title: (01) SCIGEN-Generated Materials (Raw Output)

description: A total of <b>7.86 million materials</b> generated by the SCIGEN model without pre-screening. Each ZIP folder contains a batch of CIF files.<br>Material IDs use the following lattice abbreviations:<br>Triangular: <code>tri</code>Honeycomb: <code>hon</code>Kagome: <code>kag</code>Square: <code>sqr</code>Elongated triangular: <code>elt</code>Snub square: <code>sns</code>Truncated square: <code>tsq</code>Small rhombitrihexagonal: <code>srh</code>Snub hexagonal: <code>snh</code>Truncated hexagonal: <code>trh</code>Great rhombitrihexagonal: <code>grt</code>Lieb: <code>lieb</code>
DOI: 10.6084/m9.figshare.26082373.v2
title: (01) SCIGEN's output materials

description: The total 7.87 million materials generated by the SCIGEN model (without pre-screening). Each zip folder is the batch of cif files.As the header of the material ID, we use the following abbreviations:Triangular: tri, Honeycomb: hon, Kagome: kag, Square: sqr, Elongated triangular: elt, Snub square: sns, Truncated square: tsq, Small rhombitrihexagonal: srh, Snub hexagonal: snh, Truncated hexagonal: trh, Great rhombitrihexagonal: grt, Lieb: lieb
DOI: 10.6084/m9.figshare.29991289
title: Deep Neural Network for Functional Graphical Models Structure Learning

description: Functional data refer to data that are realizations of random functions varying over a continuum, such as images or signals. In many modern fields, including neuroscience, medical science, and traffic monitoring, observations are better modeled as multivariate random functions rather than as vectors. To capture the conditional independence structure of such multivariate functional data, functional graphical models have been developed. In this paper, we propose a novel and flexible method to estimate the neighborhood of each node using a deep neural network-based functional data regression and feature selection approach with an arbitrary nonparametric form. The full graph structure is then recovered by combining the estimated neighborhoods. Our approach avoids common distributional assumptions on the random functions and circumvents the need for a well-defined precision operator, which may not exist in the functional data context. Furthermore, we establish model consistency for the proposed algorithm. The convergence rate reaches to the classical non-parametric regression rate up to a logarithmic factor. We discover a novel critical sampling frequency that governs the convergence rates of the deep neural network estimator for both densely and sparsely observed functional data. The empirical performance of our method is demonstrated through simulation studies and a real data application.
DOI: 10.6084/m9.figshare.29991289.v1
title: Deep Neural Network for Functional Graphical Models Structure Learning

description: Functional data refer to data that are realizations of random functions varying over a continuum, such as images or signals. In many modern fields, including neuroscience, medical science, and traffic monitoring, observations are better modeled as multivariate random functions rather than as vectors. To capture the conditional independence structure of such multivariate functional data, functional graphical models have been developed. In this paper, we propose a novel and flexible method to estimate the neighborhood of each node using a deep neural network-based functional data regression and feature selection approach with an arbitrary nonparametric form. The full graph structure is then recovered by combining the estimated neighborhoods. Our approach avoids common distributional assumptions on the random functions and circumvents the need for a well-defined precision operator, which may not exist in the functional data context. Furthermore, we establish model consistency for the proposed algorithm. The convergence rate reaches to the classical non-parametric regression rate up to a logarithmic factor. We discover a novel critical sampling frequency that governs the convergence rates of the deep neural network estimator for both densely and sparsely observed functional data. The empirical performance of our method is demonstrated through simulation studies and a real data application.
DOI: 10.15468/dl.2bzs4e
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus pinea",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 87 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047309-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/r00eh-j0774
title: Saccharomyces cerevisiae - JAWY1

description: Raw data files of Saccharomyces cerevisiae - JAWY1
description: <strong>Tilt Series Date:</strong> 2016-10-31</p>
<strong>Data Taken By:</strong> Shrawan kumar Mageswaran</p>
<strong>Species / Specimen:</strong> Unspecified</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Obtained from Dr. Greg Odorizzi @ Univ of Colorado at Boulder.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown overnight, diluted to 0.2 OD in the morning and allowed to grow till OD ~0.6. sm2016-10-31-4to5 (TS3,TS4)- Heat shocked @38 deg C for 2min10min. Other sm2016-10-31-* - Heat shocked @38 deg C for 1.5 hr and recovered @28deg C for 40 min.</p>
<strong>Sample Preparation:</strong> Final OD of 0.2 on grids (in growth medium) and blotted from behind</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2016-10-31-6/3dimage_80819/</p>TS5_full.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2016-10-31-6/3dimage_80819/TS5_full.rec"
        > <i class="download icon"></i> Download </a></p>

        TS5.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2016-10-31-6/rawdata/TS5.mrc"
        > <i class="download icon"></i> Download </a></p>

        TS5-DB.rec,  Reconstruction (Pixel Size 0.0 nm), 233.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2016-10-31-6/3dimage_81453/TS5-DB.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/q6teq-tgh72
title: Myxococcus xanthus delta-pilY1

description: strain SA6852Grid box YWC212
description: <strong>Tilt Series Date:</strong> 2016-04-24</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Myxococcus xanthus</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 175.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Strain form Lotte Sogaard-Andersen</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown 48 hr in shaking CTT medium at 30 degrees without antibiotics. OD600=0.7</p>
<strong>Sample Preparation:</strong> Vitrobot (MK vi) settings: 100% humidity, 4µl sample, 10 mg/ml BSA treated gold. Blot force 6, blot time 4 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-04-24-23/rawdata/</p>20160424_YWC212_20013.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-04-24-23/rawdata/20160424_YWC212_20013.mrc"
        > <i class="download icon"></i> Download </a></p>

        20160424_YWC212_20013_SIRT.rec,  Reconstruction (Pixel Size 0.0 nm), 11.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-04-24-23/3dimage_74846/20160424_YWC212_20013_SIRT.rec"
        > <i class="download icon"></i> Download </a></p>

        20160424_YWC212_20013_full.rec,  Reconstruction (Pixel Size 0.0 nm), 158.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-04-24-23/3dimage_74847/20160424_YWC212_20013_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/mnqqb-32m05
title: V. cholerae RT4236 (stationary)

description: Classical strain with ctxA deletion.Cell harbors pMT5 plasmid (inducible toxT).
description: <strong>Tilt Series Date:</strong> 2015-05-11</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O395-N1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> SIRT</p>
<strong>Collaborators and Roles:</strong> Strain from Ronald K. Taylor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Overnight cultures of Vibrio cholerae O395 NI pMT5 grown in LB pH 6.5, 1 mM IPTG and 100 ug/mL ampicilin</p>
<strong>Sample Preparation:</strong> Vitrobot (MK iv) settings: 100% humidity, 3µl sample, 10 mg/ml BSA treated gold. Blot force 6, blot time 2.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 finder.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-05-11-21/3dimage_73306/</p>20150511_AK07_10021_SIRT_2K.rec,  Reconstruction (Pixel Size 0.0 nm), 5.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-05-11-21/3dimage_73306/20150511_AK07_10021_SIRT_2K.rec"
        > <i class="download icon"></i> Download </a></p>

        20150511_AK07_10021.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-05-11-21/rawdata/20150511_AK07_10021.mrc"
        > <i class="download icon"></i> Download </a></p>

        20150511_AK07_10021_SIRT_2K.rec~,  5.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-05-11-21/file_16607/20150511_AK07_10021_SIRT_2K.rec~"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/e4848-pcf79
title: P aeruginosa del-exsD mutants

description: Pseudomonas aeruginosa, exsD
description: <strong>Tilt Series Date:</strong> 2019-06-29</p>
<strong>Data Taken By:</strong> Steven Wang</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -6.0 μm,  magnification: 19500x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Alan Hauser (Northwestern University)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> purified by 3000xg low-speed centrifugation (10 min) to remove filamentous cells. Then do a 15,000xg spin (30 min) to pellet down the mini cells.</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10 nm gold beads, 100% humidty</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/swy2019-06-29-30/rawdata/</p>exsD-mini-cell_target_30.mrc,  Tilt Series (Pixel Size 0.45 nm), 5.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/swy2019-06-29-30/rawdata/exsD-mini-cell_target_30.mrc"
        > <i class="download icon"></i> Download </a></p>

        exsD-mini-cell_target_30_full.rec,  Reconstruction (Pixel Size 0.9 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/swy2019-06-29-30/3dimage_105377/exsD-mini-cell_target_30_full.rec"
        > <i class="download icon"></i> Download </a></p>

        exsD-mini-cell_target_30.mrc.mdoc,  64.1 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/swy2019-06-29-30/rawdata/exsD-mini-cell_target_30.mrc.mdoc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/j4n3y-j6g97
title: MEF cells - Dynamin2 knockdown

description: Dynamin2 knocked down with retroviral delivery of shRNA to study mitochondrial division. grid info - DG2_grid1.
description: <strong>Tilt Series Date:</strong> 2018-11-27</p>
<strong>Data Taken By:</strong> Shrawan kumar Mageswaran</p>
<strong>Species / Specimen:</strong> MEF cells</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -8.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD, tomo3D</p>
<strong>Collaborators and Roles:</strong> Chun Shik from Chan lab helped design shRNA and provided protocols for viral transduction into Chan lab's MEF cells. Shrawan and Danielle made the cell line. Shrawan FIB-milled and performed ECT.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown on R2/2 quantifoil gold grids treated with 0.1 mg/mL fibronectin (10min)</p>
<strong>Sample Preparation:</strong> Cells were treated with 10 µM FCCP, plunge frozen and FIB-milled.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2018-11-27-8/rawdata/</p>TS4-pt30_full.mrc,  Tilt Series (Pixel Size 0.432 nm), 1.6 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2018-11-27-8/rawdata/TS4-pt30_full.mrc"
        > <i class="download icon"></i> Download </a></p>

        TS4.mrc,  Tilt Series (Pixel Size 0.432 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2018-11-27-8/rawdata/TS4.mrc"
        > <i class="download icon"></i> Download </a></p>

        TS4_4bin_SIRTl20_rotx.rec,  Reconstruction (Pixel Size 0.0 nm), 819.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2018-11-27-8/3dimage_102041/TS4_4bin_SIRTl20_rotx.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/f3bf5-f8753
title: P aeruginosa del-exsD mutants

description: Pseudomonas aeruginosa, exsD
description: <strong>Tilt Series Date:</strong> 2019-06-29</p>
<strong>Data Taken By:</strong> Steven Wang</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -6.0 μm,  magnification: 19500x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Alan Hauser (Northwestern University)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> purified by 3000xg low-speed centrifugation (10 min) to remove filamentous cells. Then do a 15,000xg spin (30 min) to pellet down the mini cells.</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10 nm gold beads, 100% humidty</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/swy2019-06-29-39/rawdata/</p>exsD-mini-cell_target_25.mrc,  Tilt Series (Pixel Size 0.45 nm), 5.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/swy2019-06-29-39/rawdata/exsD-mini-cell_target_25.mrc"
        > <i class="download icon"></i> Download </a></p>

        exsD-mini-cell_target_25_part121_28.rec,  Reconstruction (Pixel Size 0.9 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/swy2019-06-29-39/3dimage_105341/exsD-mini-cell_target_25_part121_28.rec"
        > <i class="download icon"></i> Download </a></p>

        exsD-mini-cell_target_25.mrc.mdoc,  64.1 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/swy2019-06-29-39/rawdata/exsD-mini-cell_target_25.mrc.mdoc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.j2k9hj
title: Occurrence Download

description: A dataset listing the 1159 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Museo Argentino de Ciencias Naturales \"Bernardino Rivadavia\" (MACN). Paleovertebrates National Collection (MACNPv)"
 ]
}

 The dataset's 1159 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047291-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.