cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21223/cuu2pa
title: Dataset for: Distribution of Bactericera cockerelli in the North of Peru (Huancabamba-Piura)

description: Bactericera cockerelli is a polyphagous insect that affects economically important Solanaceae such as potato (Solanum tuberosum), tomato (Solanum lycopersicum), eggplant (Solanum melongena), tobacco (Nicotiana tabacum) and other wild Solanaceae (CABI, 2022). The damage caused can be in two ways, the direct one is produced mainly by the nymphs. When sucking the sap to feed, they secrete toxins to the plant, in addition to the excreta they leave on the leaves, they can give rise to the formation of saprophytic fungi. The indirect damage is even more alarming since B. cockerelli is the vector of the bacterium Candidatus Liberibacter solanacearum (CaLso) (synonymous Ca. Liberibacter psyllaurous). This bacterium causes the devastating disease called zebra chip or spotted potato (Pérez et al., 2021) The presence of B. cockerelli in Peru was confirmed by the National Agrarian Health Service (SENASA) in December 2021, reporting the first findings in the province of Huancabamba, department of Piura. To date, and despite constant monitoring by specialists in the area, the detection of the bacterium Candidatus Liberibacter solanacearum has not yet been confirmed, nor is the current distribution of the species in Peru known. The purpose of this study is to collect individuals of B. cockerelli at 31 points in the province of Huancabamba to update the distribution of this species in Peru.
DOI: 10.5281/zenodo.7194616
title: Datasets for Evaluating Metagenomic Phage Detection Tools

description: These datasets include sequences that can be used for evaluating computational tools that detect bacteriophage in metagenomes. Datasheets are supplied for each dataset, and a README describes how to extract each dataset. Once the directories are extracted, there is a README in each directory describing the individual dataset.
description: This work was supported by grants from Academy of Finland [339172 to Alise Ponsero] and Gordon and Betty Moore Foundation [GBMF 8751 to Bonnie Hurwitz]. Kenneth Schackart acknowledges funding from a PhD training grant through the U.S. National Institutes of Health T32 GM 132008. Jessica Graham acknowledges funding from the MARC undergraduate training grant through the U.S. National Institutes of Health T34 GM 8718.
DOI: 10.5281/zenodo.7194617
title: Datasets for Evaluating Metagenomic Phage Detection Tools

description: These datasets include sequences that can be used for evaluating computational tools that detect bacteriophage in metagenomes. Datasheets are supplied for each dataset, and a README describes how to extract each dataset. Once the directories are extracted, there is a README in each directory describing the individual dataset.
description: This work was supported by grants from Academy of Finland [339172 to Alise Ponsero] and Gordon and Betty Moore Foundation [GBMF 8751 to Bonnie Hurwitz]. Kenneth Schackart acknowledges funding from a PhD training grant through the U.S. National Institutes of Health T32 GM 132008. Jessica Graham acknowledges funding from the MARC undergraduate training grant through the U.S. National Institutes of Health T34 GM 8718.
DOI: 10.5281/zenodo.7490015
title: Datasets for Evaluating Metagenomic Phage Detection Tools

description: These datasets include sequences that can be used for evaluating computational tools that detect bacteriophage in metagenomes. Datasheets are supplied for each dataset, and a README describes how to extract each dataset. Once the directories are extracted, there is a README in each directory describing the individual dataset.
description: This work was supported by grants from Academy of Finland [339172 to Alise Ponsero] and Gordon and Betty Moore Foundation [GBMF 8751 to Bonnie Hurwitz]. Kenneth Schackart acknowledges funding from a PhD training grant through the U.S. National Institutes of Health T32 GM 132008. Jessica Graham acknowledges funding from the MARC undergraduate training grant through the U.S. National Institutes of Health T34 GM 8718.
DOI: 10.5281/zenodo.7517398
title: Tese Carlos Ferreira, base de dados GMA

description: Base de dados que contém as coordenadas <em>raw </em>de cada um dos artefactos submetidos a um estudo de Morfometria Geométrica na dissertação "Variabilidade <em>vs.</em> homogeneidade no tecno-complexo Acheulense e a importância do suporte: uma abordagem baseada nos <em>Large Cutting Tools </em>do território português (entre os rios Lis e Tejo)", especialmente elaborada para a obtenção do grau de Mestre, orientada pelo Professor Doutor João Pedro Cunha-Ribeiro e pelo Professor Doutor Eduardo Méndez-Quintas. Autoria: Carlos Ferreira
DOI: 10.5281/zenodo.7517397
title: Tese Carlos Ferreira, base de dados GMA

description: Base de dados que contém as coordenadas <em>raw </em>de cada um dos artefactos submetidos a um estudo de Morfometria Geométrica na dissertação "Variabilidade <em>vs.</em> homogeneidade no tecno-complexo Acheulense e a importância do suporte: uma abordagem baseada nos <em>Large Cutting Tools </em>do território português (entre os rios Lis e Tejo)", especialmente elaborada para a obtenção do grau de Mestre, orientada pelo Professor Doutor João Pedro Cunha-Ribeiro e pelo Professor Doutor Eduardo Méndez-Quintas. Autoria: Carlos Ferreira
DOI: 10.5066/p9xfolmh
title: Passive flux meter data from monitoring wells and sentinel wells in relation to the Kirtland Air Force Base Bulk Fuels Facility, Albuquerque, New Mexico

description: This U.S. Geological Survey (USGS) data release contains push-pull test results, Darcy velocity data, and contaminant mass flux data measured in Albuquerque, New Mexico, using passive flux meters (PFMs) in monitoring and sentinel wells associated with the Kirtland Air Force Base (KAFB) Bulk Fuels Facility (BFF). Push-pull test results were used to correct Darcy velocity data collected at large depth PFM deployments in sentinel wells. The dataset from monitoring wells associated with the BFF ethylene dibromide and benzene plumes includes Darcy flux and contaminant mass flux results while the dataset from sentinel wells upgradient from public-supply wells contains only Darcy flux results. The measurements were conducted by the USGS in cooperation with KAFB, the Air Force Civil Engineer Center, EA Engineering, Science and Technology, Inc. (an engineering consulting firm), and the University of Florida. This is a revision to address discrepancies. UF confirmed that some result values in the revised data were incorrect and provided corrected data. Futhermore, the sample end date for passive flux meters deployed on May 30, 2019 at well 350307106344101 (10N.03E.36.233 KAFB-106S7) was corrected in the data release.
DOI: 10.22003/xfel.eu-data-900280-00
title: DSSC prototype commissioning
DOI: 10.22003/xfel.eu-data-900286-00
title: LASER SASE3 commissioning
DOI: 10.22003/xfel.eu-data-900287-00
title: LASER SASE2 commissioning
DOI: 10.22003/xfel.eu-data-900288-00
title: LASER SASE1 commissioning
DOI: 10.22003/xfel.eu-data-900290-00
title: Jungfrau at SPB  commissioning and calibration
DOI: 10.22003/xfel.eu-data-900294-00
title: LPD commissioning and calibration
DOI: 10.22003/xfel.eu-data-900298-00
title: FXE commissioning
DOI: 10.22003/xfel.eu-data-900314-00
title: Small area detector test
DOI: 10.21223/eogzpp/lzssya
title: 02_Datadictionary_Molecular_data_characterization.tab

description: :unav
DOI: 10.21223/eogzpp/tm2uij
title: 01_Molecular_data_characterization_of_haplotype_of_B.cockerelii in Peru_2022.tab

description: :unav
DOI: 10.21223/eogzpp
title: Dataset for: Molecular characterization of haplotype of B.cockerelii in Peru

description: Forty-nine samples of B. cockerelli DNA extraction purifications were sent for sequencing in both directions (Forward and Reverse), making a total of 98 reactions. Of these, only 48 were of good quality to be considered in the analysis. The 46 sequences are from B.cockerelli individuals from fields in the province of Huancabamba and two sequences from individuals from B.cockerelli colonies from CIP-Ecuador, included in the trial as positive controls for the potato psyllid. Through sequence analysis, it was determined that the 48 sequences under study turned out to be identical to each other, obtaining lengths of 460 nucleotides. Based on the BLAST query, the 48 consensus sequences were found to have 100% similarity to the JQ708094 sequence belonging to the core haplotype.
DOI: 10.5066/p91842g6
title: Passive flux meter data from monitoring wells and sentinel wells in relation to the Kirtland Air Force Base Bulk Fuels Facility, Albuquerque, New Mexico

description: This U.S. Geological Survey (USGS) data release contains push-pull test results, Darcy velocity data, and contaminant mass flux data measured in Albuquerque, New Mexico, using passive flux meters (PFMs) in monitoring and sentinel wells associated with the Kirtland Air Force Base (KAFB) Bulk Fuels Facility. Push-pull test results were used to correct Darcy velocity data collected at large depth PFM deployments in sentinel wells. The dataset from monitoring wells associated with the BFF ethylene dibromide and benzene plumes includes Darcy flux and contaminant mass flux results while the dataset from sentinel wells upgradient from public-supply wells contains only Darcy flux results. The measurements were conducted by the USGS in cooperation [...]
DOI: 10.5281/zenodo.7517412
title: TreeAlign Input and Output datasets (initial submission)

description: This repository provides the processed data necessary to reproduce the results for the initial TreeAlign paper submission. This includes the following: Single cell whole genome sequencing (scDNA) Copy number profiles B allele frequency profiles phylogenetic trees computed with HDBSCAN benchmarking results vs other methods 10X single cell RNA sequencing (scRNA) count matrices reference and total read counts at heterozygous SNPs meta data TreeAlign output Clone assignment for expression profiles p(k) scores p(a) scores
DOI: 10.5281/zenodo.7517410
title: TreeAlign Input and Output datasets (initial submission)

description: This repository provides the processed data necessary to reproduce the results for the initial TreeAlign paper submission. This includes the following: Single cell whole genome sequencing (scDNA) Copy number profiles B allele frequency profiles phylogenetic trees computed with HDBSCAN benchmarking results vs other methods 10X single cell RNA sequencing (scRNA) count matrices reference and total read counts at heterozygous SNPs meta data TreeAlign output Clone assignment for expression profiles p(k) scores p(a) scores
DOI: 10.6084/m9.figshare.3761562.v2453
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.5281/zenodo.7513896
title: Wikidata Dump religions-wikidata

description: RDF dump of wikidata produced with wdumper.religions wikidata<br>View on wdumper<b>entity count<b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0</b></b>
DOI: 10.5281/zenodo.7513895
title: Wikidata Dump religions-wikidata

description: RDF dump of wikidata produced with wdumper.religions wikidata<br>View on wdumper<b>entity count<b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0</b></b>
DOI: 10.5281/zenodo.7513898
title: Wikidata Dump religions-wikidata

description: RDF dump of wikidata produced with wdumper.religions wikidata<br>View on wdumper<b>entity count<b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0</b></b>
DOI: 10.5281/zenodo.7513897
title: Wikidata Dump religions-wikidata

description: RDF dump of wikidata produced with wdumper.religions wikidata<br>View on wdumper<b>entity count<b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0</b></b>
DOI: 10.5281/zenodo.7513900
title: Wikidata Dump religions-wikidata

description: RDF dump of wikidata produced with wdumper.religions wikidata<br>View on wdumper<b>entity count<b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0</b></b>
DOI: 10.5281/zenodo.7513899
title: Wikidata Dump religions-wikidata

description: RDF dump of wikidata produced with wdumper.religions wikidata<br>View on wdumper<b>entity count<b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0</b></b>
DOI: 10.5281/zenodo.7513902
title: Wikidata Dump religions-wikidata

description: RDF dump of wikidata produced with wdumper.religions wikidata<br>View on wdumper<b>entity count<b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0</b></b>
DOI: 10.5281/zenodo.7513901
title: Wikidata Dump religions-wikidata

description: RDF dump of wikidata produced with wdumper.religions wikidata<br>View on wdumper<b>entity count<b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0</b></b>
DOI: 10.3886/9e5p-sa93
title: Honduras Compact - Agricultural Public Goods Grant Facility: Final Analysis Report
DOI: 10.3886/x1as-h835
title: Honduras Compact - Agricultural Public Goods Grant Facility: Final Analysis Report
DOI: 10.3886/rs7s-rb88
title: Honduras Threshold - Public Financial Management: Baseline Analysis Report
DOI: 10.3886/9wzq-q917
title: Honduras Threshold - Public Financial Management: Baseline Analysis Report
DOI: 10.57967/hf/0261
title: BATB-Videos
DOI: 10.5281/zenodo.6960331
title: Six years of demography data for 11 reef coral species

description: Scleractinian corals are colonial animals with a range of life history strategies that make up diverse species assemblages that contribute to coral reef growth. We tagged and tracked approximately 30 colonies from each of 11 species for six years (2009-2015) in order to measure their vital rates and competitive interactions on the reef crest at Trimodal Reef, Lizard Island, Australia. Pairs of species were chosen from five growth forms (massive [<em>Goniastrea pectinata </em>and <em>G. retiformis</em>], digitate [<em>Acropora humilis</em> and <em>A. cf. digitifera</em>], corymbose [<em>A. millepora</em> and <em>A. nasuta</em>], tabular [<em>A. cytherea</em> and <em>A. hyacinthus</em>] and arborescent [<em>A. robusta</em> and <em>A. intermedia</em>]) where one species of the pair was locally rare and the other abundant. (An extra corymbose species, <em>A. spathulata</em> was included when it became apparent that <em>A. millepora</em> was too rare to work with on the reef crest, making the 11 species in total.) The tagged colonies were visited each year in the weeks prior to mass spawning. During visits, photographs were taken by two or more observers from directly above and on the horizontal plane with a scale plate to track planar area. Dead or missing colonies were recorded and new colonies tagged in order to maintain approximately 30 colonies per species throughout the six years of the study. In addition to tracking tagged corals, 30 fragments were collected from neighboring untagged colonies of each species for counting numbers of eggs per polyp (fecundity); and fragments of untagged colonies were brought into the laboratory where spawned eggs were collected for size and energy measurements. We also conducted surveys at the study site to generate size structure data for each species in several of the years. Each tagged colony photograph was digitized by at least two people. Therefore, we could examine sources of error in planar area for both photographers and outliners. Competitive interactions were recorded for a subset of species by measuring the margins of tagged colony outlines interacting with neighboring corals. The study was abruptly ended by Tropical Cyclone Nathan that killed all but nine of the over 300 tagged colonies in early 2015. Nonetheless, these data will be of use to other researchers interested in coral demography and coexistence, functional ecology, and parametrizing population, community and ecosystem models.
description: Sources of funding: The compilation of this data set was supported by Australian Research Council (ARC) Discovery-Projects (DP0987892 to JSM; DP0880544 to SRC), ARC Future Fellowships (FT110100609 to JSM; FT0990652 to AHB), the ARC Centre of Excellence for Coral Reef Studies (CE0561432; CE140100020) and the John Templeton Foundation (60501 to MD and JSM). Further funding support was received by a National Science Foundation (1948946 to JSM).
DOI: 10.5281/zenodo.6636370
title: Analyses for: Genome-wide parallelism underlies contemporary adaptation in urban lizards

description: R scripts and data files for all analyses and visualizations in "Genome-wide parallelism underlies contemporary adaptation in urban lizards" (Winchell et al., 2023, PNAS) R scripts as R-markdown code files in 3 parts are executable with files in datafiles compressed folder. R markdown files also exported as PDF's in 3 parts with code output.
DOI: 10.26093/cds/vizier.33710986
title: Monoperiodic pulsating stars in the OGLE database

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'Fourier decomposition and frequency analysis of the pulsating stars with P&lt;1d in the OGLE database. I. Monoperiodic Delta Scuti, RRc and RRab variables. Separation criteria and particularities.' (bibcode: 2001A&A...371..986P)
DOI: 10.26093/cds/vizier.36680031
title: A CHEOPS-enhanced view of the HD3167 system

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'A CHEOPS-enhanced view of the HD3167 system.' (bibcode: 2022A&A...668A..31B)
DOI: 10.25376/hra.21844050
title: Clinical trial in a dish using iPSCs shows lovastatin improves endothelial dysfunction and cellular cross-talk in LMNA cardiomyopathy

description: Mutations in <em>LMNA</em>, the gene that encodes lamin A and C, causes LMNA-related dilated cardiomyopathy (DCM) or cardiolaminopathy. LMNA is expressed in endothelial cells (ECs); however, little is known about the EC-specific phenotype of LMNA-related DCM. Here, we studied a family affected by DCM due to a frameshift variant in <em>LMNA</em>. Human induced pluripotent stem cell (iPSC)–derived ECs were generated from patients with LMNA-related DCM and phenotypically characterized. Patients with LMNA-related DCM exhibited clinical endothelial dysfunction, and their iPSC-ECs showed decreased functionality as seen by impaired angiogenesis and nitric oxide (NO) pro- duction. Moreover, genome-edited isogenic iPSC lines recapitulated the EC disease phenotype in which LMNA-corrected iPSC-ECs showed restoration of EC function. Simultaneous profiling of chromatin accessibility and gene expression dynamics by combining assay for transposase-accessible chromatin using sequencing (ATAC-seq) and RNA sequencing (RNA-seq) as well as loss-of-function studies identified Krüppel-like factor 2 (KLF2) as a potential transcription factor responsible for the EC dysfunction. Gain-of-function studies showed that treatment of LMNA iPSC-ECs with KLF2 agonists, including lovastatin, rescued the EC dysfunction. Patients with LMNA-related DCM treated with lovastatin showed improvements in clinical endothelial dysfunction as indicated by increased reactive hyperemia index. Furthermore, iPSC-derived cardiomyocytes (iPSC-CMs) from patients ex- hibiting the DCM phenotype showed improvement in CM function when cocultured with iPSC-ECs and lovastatin. These results suggest that impaired cross-talk between ECs and CMs can contribute to the pathogenesis of LMNA- related DCM, and statin may be an effective therapy for vascular dysfunction in patients with cardiolaminopathy.
DOI: 10.25376/hra.21844050.v1
title: Clinical trial in a dish using iPSCs shows lovastatin improves endothelial dysfunction and cellular cross-talk in LMNA cardiomyopathy

description: Mutations in <em>LMNA</em>, the gene that encodes lamin A and C, causes LMNA-related dilated cardiomyopathy (DCM) or cardiolaminopathy. LMNA is expressed in endothelial cells (ECs); however, little is known about the EC-specific phenotype of LMNA-related DCM. Here, we studied a family affected by DCM due to a frameshift variant in <em>LMNA</em>. Human induced pluripotent stem cell (iPSC)–derived ECs were generated from patients with LMNA-related DCM and phenotypically characterized. Patients with LMNA-related DCM exhibited clinical endothelial dysfunction, and their iPSC-ECs showed decreased functionality as seen by impaired angiogenesis and nitric oxide (NO) pro- duction. Moreover, genome-edited isogenic iPSC lines recapitulated the EC disease phenotype in which LMNA-corrected iPSC-ECs showed restoration of EC function. Simultaneous profiling of chromatin accessibility and gene expression dynamics by combining assay for transposase-accessible chromatin using sequencing (ATAC-seq) and RNA sequencing (RNA-seq) as well as loss-of-function studies identified Krüppel-like factor 2 (KLF2) as a potential transcription factor responsible for the EC dysfunction. Gain-of-function studies showed that treatment of LMNA iPSC-ECs with KLF2 agonists, including lovastatin, rescued the EC dysfunction. Patients with LMNA-related DCM treated with lovastatin showed improvements in clinical endothelial dysfunction as indicated by increased reactive hyperemia index. Furthermore, iPSC-derived cardiomyocytes (iPSC-CMs) from patients ex- hibiting the DCM phenotype showed improvement in CM function when cocultured with iPSC-ECs and lovastatin. These results suggest that impaired cross-talk between ECs and CMs can contribute to the pathogenesis of LMNA- related DCM, and statin may be an effective therapy for vascular dysfunction in patients with cardiolaminopathy.
DOI: 10.21223/q6zmf6/lpu0oz
title: 02_Data_dictionary_Optimal pesticide regimes determined for managing B. cockerelli in Northern Peru_2022.tab

description: :unav
DOI: 10.21223/q6zmf6/745led
title: 01_Data_Optimal pesticide regimes determined for managing B. cockerelli in Northern Peru_2022.tab

description: :unav
DOI: 10.21223/q6zmf6
title: Dataset for: Optimal pesticide regimes determined for managing B. cockerelli in Northern Peru

description: "At present, the potato is the main crop for small producers in the Piura mountains, both for economic income and for its nutritional value. In order for farmers to strengthen their knowledge and capacities, they must work with concrete, durable and accessible alternatives to current needs and friendly to the environment, which ensure that potato production, especially native potatoes, does not diminish and, most importantly, does not contaminate. nature. Despite its high yield potential under family farming conditions in the Andean region, its production is always affected by biotic (pests and diseases) and abiotic (frost, drought, among others) factors; which cause losses in quality and yield of the product. To mitigate the adverse effects generated by the aforementioned factors, it is strategic to implement Good Agricultural Practices before and after sowing or during its production process, as well as harvesting, post-harvesting and storage, ensuring the quality and safety of the product, the protection of the environment and the health of consumers. This year the potato crop has been affected by the populations of nymphs and adults of B. cockerelli, a sap-sucking biting hemipteran attacking the leaves that often causes drying and death of the plants. Given this problem, the farmer leaves forced to carry out applications of chemical products that allow it to reduce populations without measuring the consequences to the environment and to the health of the farmer and the final consumer. Faced with this sanitary problem, the need arose to propose this research experiment, proposing 7 chemical control strategies as an alternative for the integrated management of B. cockerelli, the results will serve to improve the IPM of this species that help or guide the small farmer. "
DOI: 10.26093/cds/vizier.51142596
title: RR Lyrae in new galactic bulge window

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'RR Lyrae variables in a new galactic bulge window.' (bibcode: 1997AJ....114.2596B)