cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3545848
title: Meningococcal core and accessory phasomes vary by clonal complex

description: <em>Neisseria meningitidis </em>are Gram-negative human commensal-pathogens, with extensive phenotypic plasticity afforded by phase variable gene expression. Phase variation is a stochastic switch in gene expression from an ON to an OFF state, mediated by localised hypermutation of simple sequence repeats. Circulating <em>N. meningitidis </em>clones vary in propensity to cause disease with some clonal complexes classified as hypervirulent and others as carriage-associated. We examined the phase-variable gene repertoires, or phasome, of these lineages in order to determine if phase variation contributes to disease propensity. We analysed 3,328 genomes representative of nine circulating meningococcal clonal complexes with Phasome<em>It</em>, a tool which identifies phase-variable genes by the presence of simple sequence repeats (SSR) and homologous gene clusters. Presence, absence and functions of all identified phase-variable gene clusters were confirmed by annotation or BLAST searches within the Neisseria pubMLST database. While no significant differences were detected in the number of phase-variable genes or the core, conserved phasome content between hypervirulent and carriage lineages, individual clonal complexes exhibited major variations in phase-variable gene numbers. Phylogenetic clusters produced by phasome or core genome analyses were similar indicating co-evolution of phase-variable genes with the core genome. While conservation of phase-variable clusters is high, with 76% present in all meningococcal isolates, maintenance of an SSR is variable ranging from conserved in all isolates to present only in single clonal complexes, indicating differing evolutionary trajectories for each lineage. Diverse functional groups of PV genes were present across the meningococcal lineages, however, the majority directly or indirectly influence bacterial surface antigens and could impact on future vaccine development. Finally, we observe that meningococci have open pan phasomes, indicating on-going evolution of PV gene content and a significant potential for adaptive changes in this clinically relevant genus.
DOI: 10.5281/zenodo.3545849
title: Meningococcal core and accessory phasomes vary by clonal complex

description: <em>Neisseria meningitidis </em>are Gram-negative human commensal-pathogens, with extensive phenotypic plasticity afforded by phase variable gene expression. Phase variation is a stochastic switch in gene expression from an ON to an OFF state, mediated by localised hypermutation of simple sequence repeats. Circulating <em>N. meningitidis </em>clones vary in propensity to cause disease with some clonal complexes classified as hypervirulent and others as carriage-associated. We examined the phase-variable gene repertoires, or phasome, of these lineages in order to determine if phase variation contributes to disease propensity. We analysed 3,328 genomes representative of nine circulating meningococcal clonal complexes with Phasome<em>It</em>, a tool which identifies phase-variable genes by the presence of simple sequence repeats (SSR) and homologous gene clusters. Presence, absence and functions of all identified phase-variable gene clusters were confirmed by annotation or BLAST searches within the Neisseria pubMLST database. While no significant differences were detected in the number of phase-variable genes or the core, conserved phasome content between hypervirulent and carriage lineages, individual clonal complexes exhibited major variations in phase-variable gene numbers. Phylogenetic clusters produced by phasome or core genome analyses were similar indicating co-evolution of phase-variable genes with the core genome. While conservation of phase-variable clusters is high, with 76% present in all meningococcal isolates, maintenance of an SSR is variable ranging from conserved in all isolates to present only in single clonal complexes, indicating differing evolutionary trajectories for each lineage. Diverse functional groups of PV genes were present across the meningococcal lineages, however, the majority directly or indirectly influence bacterial surface antigens and could impact on future vaccine development. Finally, we observe that meningococci have open pan phasomes, indicating on-going evolution of PV gene content and a significant potential for adaptive changes in this clinically relevant genus.
DOI: 10.5525/gla.researchdata.923
title: Sub-100 nanosecond temporally resolved imaging with the Medipix3 direct electron detector

description: Experimental data files for the associated paper. See readme for full details.
DOI: 10.17632/s6f2t63kmy.1
title: Data for: CR6 interacting factor 1 deficiency induces premature senescence via SIRT3 inhibition in endothelial cells

description: Raw data for submission
DOI: 10.5281/zenodo.3567527
title: Distinct metabolomic profile due to gestational diabetes and it's treatment mode_Supplemental data

description: Supplemental data for <strong>Distinct metabolomic profile due to gestational diabetes and it’s treatment mode</strong>
DOI: 10.5281/zenodo.3567528
title: Distinct metabolomic profile due to gestational diabetes and it's treatment mode_Supplemental data

description: Supplemental data for <strong>Distinct metabolomic profile due to gestational diabetes and it’s treatment mode</strong>
DOI: 10.17632/gt7xdbs3kt.1
title: Phishing Detection

description: The dataset is used for research study for intelligent phishing detection based on 35 features of image, frame and text
DOI: 10.17632/gt7xdbs3kt.2
title: Phishing Detection

description: The dataset is used for research study for intelligent phishing detection based on 35 features of image, frame and text
DOI: 10.17632/92523hssgv.1
title: Commercial Nuclear Reactor Fractional Fission Rate database from FISPIN10A calculations for AGR, PWR and BWR

description: The fractional fission rates of the nine most important nuclides in AGR, BWR and PWR uranium dioxide nuclear fuel were calculated using the FISPIN10A code for a typical range of uranium enrichments (weight percentage of \(^{235}\) U wrt U) and power ratings (MW/t). The irradiation, aka burnup or exposure, range covered was zero to 51 in steps of 1 (GWd/t). These can be used to calculate aggregate properties of nuclear fuel where the property differs between different fissioning systems.
DOI: 10.17632/9j3tt84hyx.2
title: The Hybrid Electric Vehicle - Traveling Salesman Problem with Time Windows (HEV-TSPTW) Instances

description: This dataset represents the benchmark instances used in The Hybrid Electric Vehicle - Traveling Salesman Problem with Time Windows (HEV-TSPTW) by Doppstadt, Koberstein and Vigo. The instances contain a description of each provided parameter.
DOI: 10.17632/hw8mcww6fd.1
title: Raman Spectra of C1-C3 Primary Alcohol Gasification Products in Supercritical Water

description: Methanol, ethanol, and isopropyl alcohol are gasified in a continuous supercritical water reactor at temperatures from 500 to 560 °C, residence times between 3 and 8 s, a constant pressure of 25 MPa, and a constant initial concentration of 10 vol%. Raman spectra of the reaction products in the reactor effluent stream are collected for each experimental condition and for each alcohol. Product spectra include hydrogen, carbon monoxide, carbon dioxide, formaldehyde, methane, ethylene, ethane, acetaldehyde, acetone, acetic acid, propene, and propane. All spectra are collected at 25 MPa and 20 °C. Spectra are collected using a Raman flowcell from MarqMetrix (Seattle, WA), containing a high-resolution fiber-optic Raman laser, and an optical cell with a sapphire ball lens, which focuses the Raman laser into the effluent stream and collects Raman spectra along the same axis in the backscatter configuration. The Raman laser has an excitation wavelength of 785 nm, and is operated at 300 mW. For each experimental condition, five replicate spectra are collected and averaged, each with a 20 s integration time. This was to minimize measurement noise. The "dark" signal was subtracted automatically with the MarqMetrix data collection software, and the fluorescent background signal was subtracted using a semi-manual MATLAB routine. Spectra were normalized to the height of the prominent sapphire peak.
DOI: 10.5281/zenodo.3567962
title: Wikimedia Links to UK Repositories (snapshot)

description: This is a snapshot (08/12/2019) of links from Wikipedia to UK repositories using the "insource" parameter on this special page to search across Wikipedia https://en.wikipedia.org/w/index.php?sort=relevance&search= It covers institutional open access and data repositories. It also includes non-institutional and subject specific data repositories including figshare, zenodo, datadryad N.B. There are over 150 HEIs in the UK and for practical reasons it is only complete across the Russell Group. Other repositories were partially crowdsourced via the UKCoRR mailing list which can be updated via this Google sheet for future iterations of the dataset https://docs.google.com/spreadsheets/d/1rJ3Se0y6dJJW43SLeFxaKlSsdrQN5p4lQLK_rMhxAZQ/edit#gid=0
DOI: 10.5281/zenodo.3567963
title: Wikimedia Links to UK Repositories (snapshot)

description: This is a snapshot (08/12/2019) of links from Wikipedia to UK repositories using the "insource" parameter on this special page to search across Wikipedia https://en.wikipedia.org/w/index.php?sort=relevance&search= It covers institutional open access and data repositories. It also includes non-institutional and subject specific data repositories including figshare, zenodo, datadryad N.B. There are over 150 HEIs in the UK and for practical reasons it is only complete across the Russell Group. Other repositories were partially crowdsourced via the UKCoRR mailing list which can be updated via this Google sheet for future iterations of the dataset https://docs.google.com/spreadsheets/d/1rJ3Se0y6dJJW43SLeFxaKlSsdrQN5p4lQLK_rMhxAZQ/edit#gid=0
DOI: 10.15468/dearb9
title: New generic assignment to the harvestman Metaphareus punctatus (Opiliones: Stygnidae) and observations about it reproductive behavior

description: This dataset contains the digitized treatments in Plazi based on the original journal article M., Osvaldo Villarreal, Sánchez, Nestor, Ascenção, Antonio De (2019): New generic assignment to the harvestman Metaphareus punctatus (Opiliones: Stygnidae) and observations about it reproductive behavior. Iheringia Série Zoologia 109: 1-6, DOI: 10.1590/1678-4766e2019008
DOI: 10.17632/3yz353c8ms.1
title: Dataset for the paper "Exact and linearized refractive index stress-dependence in anisotropic photoelastic crystals"

description: In order to make the paper "Exact and linearized refractive index stress-dependence in anisotropic photoelastic crystals" more readable and concise, we collected here many of the explicit calculation which are necessary to obtain the results presented into the paper.
DOI: 10.17632/7w8bt4f879.1
title: Epidemiology, diagnosis and treatment data of patients with tuberculosis in the far north of Brazil

description: The data sets refer to the epidemiology, diagnosis and treatment of pulmonary tuberculosis of patients notified from 2013 to 2016, residents of the city of Oiapoque, state of Amapá. In total there were 41 reports of the disease, mostly in young males diagnosed through sputum smear who underwent the directly observed treatment. Data collection showed a failure in the notification process, with variables ignored and the municipality did not reach the cure goal proposed by the World Health Organization.
DOI: 10.5281/zenodo.3568103
title: delete

description: delete (repository outdated) new repository: https://zenodo.org/record/3713179#.XoxaDWDgq71
DOI: 10.5281/zenodo.3568104
title: delete

description: delete (repository outdated) new repository: https://zenodo.org/record/3713179#.XoxaDWDgq71
DOI: 10.17632/8czn4rxz68.1
title: Dataset of Congruent Inhibitors and Decoys (D-COID)

description: This dataset contains Rosetta energy-minimized crystal structure of protein-ligand complex and their congruent, property-matched decoys. It was created to serves as a realistic benchmark dataset for tasks in computational drug discovery.
DOI: 10.5281/zenodo.3568147
title: SERVS lightcone of model galaxies.

description: This SERVS lightcone of model galaxies has been constructed using the Lagos12 Galform model using the techniques described in Merson et al. 2013. The lightcone covers the redshift range z = 0.0 to z = 6.0 and has a sky coverage of 18.09 deg<sup>2</sup>, centred on a sky position of (RA,DEC) = (93.5◦, 7.5◦ ). The SERVS lightcone contains 1518854 model galaxies with apparent, dust attenuated magnitudes in the Spizter 3.6 microns bands down to 2micro Jy (AB=23.1). The lightcone was constructed on the Millennium dark matter only N-body simulation. For each model galaxy, model multi-wavelength coverage is provided together with a range of global properties. Further details are provided in the SERVS.Lagos12.DB.Mill1.lightcone.readme.pdf document, within this dataset.
description: hdf5 format
description: {"references": ["Lagos et al. 2012, https://arxiv.org/abs/1204.0795", "Merson et al. 2013, https://arxiv.org/abs/1206.4049"]}
DOI: 10.17632/zp58nr3hww.1
title: Data for the Continuous Airgun Experiment by Wang et al. (2019JB018218)

description: The raw data of a continuous airgun experiment to monitor the subtle velocity changes. More details can be found in Wang et al., (2019JB018218). The data from 16 stations are included (with one refernece station and 15 distant stations). Each 100-s long waveform was trimmed from the 0.5 s before the airgun shot. The data is in Seismic Analysis Code (SAC) format.
DOI: 10.17632/zp58nr3hww.2
title: Data for the Continuous Airgun Experiment by Wang et al. (2019JB018218)

description: The raw data of a continuous airgun experiment to monitor the subtle velocity changes. More details can be found in Wang et al., (2019JB018218). The data from 16 stations are included (with one refernece station and 15 distant stations). Each 100-s long waveform was trimmed from the 0.5 s before the airgun shot. The data is in Seismic Analysis Code (SAC) format.
DOI: 10.5281/zenodo.3568146
title: SERVS lightcone of model galaxies.

description: This SERVS lightcone of model galaxies has been constructed using the Lagos12 Galform model using the techniques described in Merson et al. 2013. The lightcone covers the redshift range z = 0.0 to z = 6.0 and has a sky coverage of 18.09 deg<sup>2</sup>, centred on a sky position of (RA,DEC) = (93.5◦, 7.5◦ ). The SERVS lightcone contains 1518854 model galaxies with apparent, dust attenuated magnitudes in the Spizter 3.6 microns bands down to 2micro Jy (AB=23.1). The lightcone was constructed on the Millennium dark matter only N-body simulation. For each model galaxy, model multi-wavelength coverage is provided together with a range of global properties. Further details are provided in the SERVS.Lagos12.DB.Mill1.lightcone.readme.pdf document, within this dataset.
description: hdf5 format
description: {"references": ["Lagos et al. 2012, https://arxiv.org/abs/1204.0795", "Merson et al. 2013, https://arxiv.org/abs/1206.4049"]}
DOI: 10.17632/ky8db68pp9.1
title: Zombie Firms and the Upgrading of Businesses in China —Evidence from Chinese Listed Firms

description: This is the data in the paper "Zombie Firms and the Upgrading of Businesses in China —Evidence from Chinese Listed Firms." by Yong Qi, Shuo Yang and Yudi Yang.The sample data of this study is comprised of data from Chinese A-share listed companies between 2008 and 2017. TFP_OP and TFP_LP represent the level of firm upgrading. zombieratio represents the proportion of zombie firms in an industry using the revised identification method.The firm control variables are size (the natural logarithm of the employees), age (the natural logarithm of the year of listing), growth (income growth rate), lev (asset-liability ratio), stockratio (shareholdings of the top ten shareholders), and cashflow (net cash flow from business activities / business income). The industry control variables are sales (growth rate of industrial sales), and wage (growth rate of industrial average wage). The province control variables are firstgdp (contribution to GDP by the primary industry), secondgdp (contribution to GDP by the secondary industry), and pergdp (GDP per capita).
DOI: 10.17632/wzhmxy4gkf.1
title: Hurricane Florence North Carolina Shelter Location

description: This dataset includes information about block groups and potential shelter locations for four cities in North Carolina which were impacted by Hurricane Florence.
DOI: 10.15129/216a65df-3b6e-4e93-9c2d-dfc8cae1eb7b
title: Data for: "Establishing a Field-Effect Transistor Sensor for the Detection of Mutations in the Tumour Protein 53 Gene (TP53)—An Electrochemical Optimisation Approach"

description: This dataset is associated with a paper titled "Establishing a Field-Effect Transistor Sensor for the Detection of Mutations in the Tumour Protein 53 Gene (TP53)—An Electrochemical Optimisation Approach" published in MDPI Biosensors, https://doi.org/10.3390/bios9040141 on 6th December 2019. All experimental details are thoroughly described in the paper. All data are placed in one Excel file (version 2016) and are fully self-explanatory.
DOI: 10.17632/2wth7n9662.1
title: Data for: The synchrony of cover crop decomposition, enzyme activity, and nitrogen availability in a corn agroecosystem

description: Data for cover crop soil inorganic nitrogen availability study submitted for publication in December 2018 to the Journal of Soil and Tillage Research. Data are enzyme activity and inorganic nitrogen availability in cover cropped corn agroecosystems at the Purdue University Agriculture Center for Research and Education (ACRE) (2016, 2017).
DOI: 10.15129/770d0860-130f-4d1e-896f-0df857f17513
title: Data for: "Control of spatially rotating structures in diffractive Kerr cavities"

description: This dataset contains a series of .dat files for the figures together with the mathematica code to read the data and produce all the figures.
DOI: 10.5284/1057527
title: Archaeological Watching Brief at Events House, Hindlip Lane, Worcester (cotswold2-308248)

description: An archaeological watching brief was undertaken by Cotswold Archaeology during groundworks associated with the demolition of buildings and the extension of a car park for an existing motor dealership at Events House, Hindlip Lane, Worcester. The earliest feature identified during the watching brief comprised a stone and red brick well of probable 18th-century date. The remains of a later, 18th to 19th century, building were also identified. The location of this building correlates closely with a farmhouse depicted as being part of Spellis Farm on the 1843 Tithe Map for the Parish of Claines. No evidence of structural remains pre-dating the 18th century were identified during the current works. A number of modern additions to the historic farmhouse, seemingly relating to its subsequent use as a restaurant and a public house were also identified.
DOI: 10.5284/1057528
title: Archaeological Work at West Acres Caravan Park, Weston-super-Mare (cotswold2-343116)

description: Archaeology in May 2019 at West Acres Caravan Park, Westonsuper- Mare. Eight trenches were excavated. Ditches, pits and postholes were identified throughout the northwestern and eastern extents of the site, with at least one area of possible settlement activity identified in the south-east. Late prehistoric/Roman dating material was recovered. All late prehistoric/Romano-British features were sealed by a horizon of soil formation dated to the later Roman period. The soil horizon was cut be a pond/channel of probable post-Roman date.
DOI: 10.17632/2yxs3pk9fm.1
title: Data for: Automatic prediction of stress in piglets (Sus Scrofa) using infrared skin temperature

description: When working with bigdata, it is common to come across imprecise, conflicting, and lack of data. Extracting useful information from inaccurate data is a challenge for IT in general. Depending on the data source, conflicting data can be presented and the usual procedures do not allow the direct treatment of such data. The prompt is that contradictory information is as vital as other information or may even be the key to indicating crucial information. Although there are methods for handling fuziness, such methods are not able to adequately address the concept of inconsistency. In this essay, we present a method that can directly deal with the concepts of imprecision, inconsistency, and paracompleteness (lack of data) in a non-trivial way. Such methodology is based on the paraconsistent annotated logic E that allows manipulating such concepts. Based on this logic was built the para-analyzer algorithm, a logic analyzer that allows analyzing the concepts mentioned. Based on the para-analyzer, a small expert system was built, which then decides imprecise, contradictory and incomplete data. The suggested method can be used in a variety of subjects, especially where there is imprecision in the data, conflicting data, and lack of data.
DOI: 10.5284/1057529
title: Archaeological evaluation at Land off Pershore Road, Eckington, Worcestershire (cotswold2-370822)

description: Land off Pershore Road, Eckington, Worcestershire Short description An archaeological evaluation was undertaken by Cotswold Archaeology in June 2019 on land off Pershore Road, Eckington, Worcestershire. A total of eight trenches were excavated. The evaluation identified a small number of archaeological features within the proposed development area. These were predominately located within the south-eastern part of the site. An undated ditch/gully, identified in south-eastern part of the site confirms the presence of a penannular anomaly identified by the preceding geophysical survey. The exact function of this ditch/gully remains unclear; however it may represents part of a foundation trench or drip gully for a structure of possible prehistoric/Roman date. A further undated ditch/gully, also identified in the southeastern part of the site, may represent part of a further structure or agricultural enclosure. Evidence of medieval/post-medieval agricultural activity, comprising the ploughed out remains of a ridge and furrow field system, was identified in all of the excavated trenches. Two ditches, one of which contained medieval (12th to 14th-century) pottery, were identified in the south-eastern part of the site and, due to their broadly similar alignment, may be associated with the identified ridge and furrow field system. An undated ditch/gully, identified in northern part of the site may also relate to agricultural activity/ploughing. Two undated, north/south aligned ditches were identified in the south-eastern part of the site. Neither ditch appears to correspond to any anomaly identified by the preceding geophysical survey nor do they appear to correlate to any field boundary depicted by available historic mapping.
DOI: 10.5284/1057530
title: Land off Chestnut Close, Lower Moor, Worcestershire Archaeological Evaluation (cotswold2-370868)

description: An archaeological evaluation was undertaken by Cotswold Archaeology in January 2018 at land off Chestnut Close Lower Moor, Worcestershire. Five trenches were excavated. Three ditches containing abraded medieval pottery were recorded