cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1433999.08fu
title: SH1433999.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1434000.08fu
title: SH1434000.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.25549/one-c4-33274
title: Ann Bannon (Ann Weldy), letters (1960/1961)

description: Ann Bannon (also known as Ann Weldy), lecture, letters (1960/1961)
DOI: 10.15156/bio/sh1434001.08fu
title: SH1434001.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1434002.08fu
title: SH1434002.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1434003.08fu
title: SH1434003.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1434004.08fu
title: SH1434004.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.22584778.v1
title: Peripheral helper-T-cell-derived CXCL13 is a crucial pathogenic factor in idiopathic multicentric Castleman disease

description: Source data of the manuscript
DOI: 10.6084/m9.figshare.22584778
title: Peripheral helper-T-cell-derived CXCL13 is a crucial pathogenic factor in idiopathic multicentric Castleman disease

description: Source data of the manuscript
DOI: 10.6084/m9.figshare.23899275.v1
title: A genome-scale metabolic model of parasitic whipworm

description: Supplementary data related to 'A genome scale metabolic model of parasitic whipworm. It contains all data generated in the study including the model, iTMU798, and source data.
DOI: 10.6084/m9.figshare.23899275
title: A genome-scale metabolic model of parasitic whipworm

description: Supplementary data related to 'A genome scale metabolic model of parasitic whipworm. It contains all data generated in the study including the model, iTMU798, and source data.
DOI: 10.6084/m9.figshare.24201087.v1
title: Cumulative effect of PM<sub>2.5</sub> components is larger than the effect of PM<sub>2.5</sub> mass on child health in India

description: The dataset and code that supports our analysis on " The cumulative effect of PM2.5 components is larger than the effect of PM2.5 mass on child health in India" are attached herewith
DOI: 10.6084/m9.figshare.24201087
title: Cumulative effect of PM<sub>2.5</sub> components is larger than the effect of PM<sub>2.5</sub> mass on child health in India

description: The dataset and code that supports our analysis on " The cumulative effect of PM2.5 components is larger than the effect of PM2.5 mass on child health in India" are attached herewith
DOI: 10.6084/m9.figshare.24208917.v1
title: Accelerated deprotonation with a hydroxy-silicon alkali solid to recharge a zinc-air battery

description: Raw data on electrochemical performance and battery performance
DOI: 10.6084/m9.figshare.24208917
title: Accelerated deprotonation with a hydroxy-silicon alkali solid to recharge a zinc-air battery

description: Raw data on electrochemical performance and battery performance
DOI: 10.6084/m9.figshare.23409179.v1
title: Synthetic control of correlated disorder in UiO-66 frameworks

description: Crystallographic file
DOI: 10.6084/m9.figshare.23409179
title: Synthetic control of correlated disorder in UiO-66 frameworks

description: Crystallographic file
DOI: 10.5281/zenodo.10060171
title: VAPB Dataset (Obara + Nixon-Abell et al., 2023) v.1

description: WT VAPB trajectories and raw images that are used for the work generated in Obara + Nixon-Abell et al., 2023.
DOI: 10.5281/zenodo.10060172
title: VAPB Dataset (Obara + Nixon-Abell et al., 2023) v.1

description: WT VAPB trajectories in 24 cells that are used for the work generated in Obara + Nixon-Abell et al., 2023.
DOI: 10.5281/zenodo.10060212
title: VAPB Dataset (Obara + Nixon-Abell et al., 2023) v.1

description: WT VAPB trajectories and raw images that are used for the work generated in Obara + Nixon-Abell et al., 2023.
DOI: 10.5281/zenodo.10060350
title: VAPB-HBSS Dataset (Obara + Nixon-Abell et al., 2023) v.1

description: WT VAPB trajectories and raw imaging data from cells treated with 8 hours of HBSS starvation that are used for the work generated in Obara + Nixon-Abell et al., 2023.
DOI: 10.5281/zenodo.10060349
title: VAPB-HBSS Dataset (Obara + Nixon-Abell et al., 2023) v.1

description: WT VAPB trajectories and raw imaging data from cells treated with 8 hours of HBSS starvation that are used for the work generated in Obara + Nixon-Abell et al., 2023.
DOI: 10.5281/zenodo.10060416
title: Les outils de résolution des conflits au sein des organisations
DOI: 10.5281/zenodo.10060415
title: Les outils de résolution des conflits au sein des organisations
DOI: 10.6084/m9.figshare.24473182
title: narative interview

description: narrative of interview
DOI: 10.6084/m9.figshare.24440538.v1
title: Lichen as Bioindicators: Assessing their Response to Heavy Metal Pollution in Their Native Ecosystem

description: Lichens play crucial roles in the ecosystems, contributing to soil formation and nutrient cycling, and being used in biomonitoring efforts to assess the sustainability of ecosystems including air quality. Previous studies on heavy metal accumulation in lichens have mostly relied on manipulated environments, such as transplanted lichens, leaving us with a dearth of research on how lichens physiologically respond to heavy metal exposure in their natural habitats. To fill this knowledge gap, we investigated lichens from two of South Korea’s geographically distant regions, Gangwon Province and Jeju Island, and examined whether difference in ambient heavy metal concentrations could be detected through physiological variables, including chlorophyll damage, lipid oxidation, and protein content. The physiological variables of lichens in response to heavy metals differed according to the collection area: Arsenic exerted a significant impact on chlorophyll degradation and protein content. The degree of fatty acid oxidation in lichens was associated with increased Cu concentrations. Our research highlights the value of lichens as a bioindicator, as we found that even small variations in ambient heavy metal concentrations can be detected in natural lichens. Furthermore, our study sheds light on which physiology variables that can be used as indicators of specific heavy metals, underscoring the potential of lichens for future ecology studies.
DOI: 10.6084/m9.figshare.24440538
title: Lichen as Bioindicators: Assessing their Response to Heavy Metal Pollution in Their Native Ecosystem

description: Lichens play crucial roles in the ecosystems, contributing to soil formation and nutrient cycling, and being used in biomonitoring efforts to assess the sustainability of ecosystems including air quality. Previous studies on heavy metal accumulation in lichens have mostly relied on manipulated environments, such as transplanted lichens, leaving us with a dearth of research on how lichens physiologically respond to heavy metal exposure in their natural habitats. To fill this knowledge gap, we investigated lichens from two of South Korea’s geographically distant regions, Gangwon Province and Jeju Island, and examined whether difference in ambient heavy metal concentrations could be detected through physiological variables, including chlorophyll damage, lipid oxidation, and protein content. The physiological variables of lichens in response to heavy metals differed according to the collection area: Arsenic exerted a significant impact on chlorophyll degradation and protein content. The degree of fatty acid oxidation in lichens was associated with increased Cu concentrations. Our research highlights the value of lichens as a bioindicator, as we found that even small variations in ambient heavy metal concentrations can be detected in natural lichens. Furthermore, our study sheds light on which physiology variables that can be used as indicators of specific heavy metals, underscoring the potential of lichens for future ecology studies.
DOI: 10.6084/m9.figshare.24454413
title: Unveiling the Diversity of <i>Hydnum</i> in the Republic of Korea with One New Species, <i>Hydnum paucispinum</i>

description: <i>Hydnum</i> is a genus of ectomycorrhizal fungi belonging to the Hydnaceae family. It is widely distributed across different regions of the world, including North America, Europe, and Asia; however, some of them showed disjunct distributions. In recent years, with the integration of molecular techniques, the taxonomy and classification of <i>Hydnum</i> have undergone several revisions and advancements. However, these changes have not yet been applied in the Republic of Korea. In this study, we conducted an integrated analysis combining the morphological and molecular analyses of 30 specimens collected over a period of approximately 10 years in the Republic of Korea. For molecular analysis, the sequence data of the internal transcribed spacer (ITS) region, the large subunit of nuclear ribosomal RNA gene (nrLSU), and a portion of translation elongation factor 1-α (<i>TEF1</i>) were employed as molecular markers. Through this study, we identified eight species that had previously not been reported to occur in the Republic of Korea, including one new species, <i>Hydnum paucispinum</i>. A taxonomic key and detailed descriptions of the eight <i>Hydnum</i> species are provided in this study.
DOI: 10.6084/m9.figshare.24454413.v1
title: Unveiling the Diversity of <i>Hydnum</i> in the Republic of Korea with One New Species, <i>Hydnum paucispinum</i>

description: <i>Hydnum</i> is a genus of ectomycorrhizal fungi belonging to the Hydnaceae family. It is widely distributed across different regions of the world, including North America, Europe, and Asia; however, some of them showed disjunct distributions. In recent years, with the integration of molecular techniques, the taxonomy and classification of <i>Hydnum</i> have undergone several revisions and advancements. However, these changes have not yet been applied in the Republic of Korea. In this study, we conducted an integrated analysis combining the morphological and molecular analyses of 30 specimens collected over a period of approximately 10 years in the Republic of Korea. For molecular analysis, the sequence data of the internal transcribed spacer (ITS) region, the large subunit of nuclear ribosomal RNA gene (nrLSU), and a portion of translation elongation factor 1-α (<i>TEF1</i>) were employed as molecular markers. Through this study, we identified eight species that had previously not been reported to occur in the Republic of Korea, including one new species, <i>Hydnum paucispinum</i>. A taxonomic key and detailed descriptions of the eight <i>Hydnum</i> species are provided in this study.
DOI: 10.6084/m9.figshare.24317230
title: Test Cases for Reliability-Based Planning of Cable Layout for Offshore Wind Farm Electrical Collector System Considering Post-Fault Network Reconfiguration

description: This is the dataset for the paper 'Reliability-Based Planning of Cable Layout for Offshore Wind Farm Electrical Collector System Considering Post-Fault Network Reconfiguration'.
DOI: 10.6084/m9.figshare.24317230.v3
title: Test Cases for Reliability-Based Planning of Cable Layout for Offshore Wind Farm Electrical Collector System Considering Post-Fault Network Reconfiguration

description: This is the dataset for the paper 'Reliability-Based Planning of Cable Layout for Offshore Wind Farm Electrical Collector System Considering Post-Fault Network Reconfiguration'.
DOI: 10.5281/zenodo.10006646
title: Dataset for Simulation-guided engineering of split GFPs with efficient β-strand photodissociation

description: Files associated with performed experiments and simulations, including source data from experimental measurements and starting structures, parameters, simulation input files, and short videos of simulation trajectories. 
Simulation files include:

Initial coordinates of the GFP chromophore for geometry optimization and RESP calculations in GAUSSIAN
Parameter and starting files for QM/MM calculations around the conical intersection in TeraChem
Parameter, coordinate and input files for regular MD and simulated annealing simulations in AMBER
Parameter, coordinate and input files for umbrella sampling simulations of isomerization in AMBER
Additionally, short videos are included of simulations of the cis and trans conformations.
Experimental source data include: 

UV-vis data from strand-exchange experiments 
Mass spectrometry data 
Fluorescence data
DOI: 10.5281/zenodo.10060424
title: VAPB + PTPIP51 Dataset (Obara + Nixon-Abell et al., 2023)

description: WT VAPB trajectories and raw images from cells overexpressing PTPIP51 that are used for the work generated in Obara + Nixon-Abell et al., 2023.
DOI: 10.5281/zenodo.10060447
title: Dataset for Simulation-guided engineering of split GFPs with efficient β-strand photodissociation

description: Files associated with performed experiments and simulations, including source data from experimental measurements and simulations, starting structures, parameters, simulation input files, and short videos of simulation trajectories. 
Simulation files include:

Initial coordinates of the GFP chromophore for geometry optimization and RESP calculations in GAUSSIAN
Parameter and starting files for QM/MM calculations around the conical intersection in TeraChem
Parameter, coordinate and input files for regular MD and simulated annealing simulations in AMBER
Parameter, coordinate and input files for umbrella sampling simulations of isomerization in AMBER
Results files from TeraChem
Additionally, short videos are included of simulations of the cis and trans conformations.
Experimental source data include: 

UV-vis data from strand-exchange experiments
Mass spectrometry data
Fluorescence data
DOI: 10.5281/zenodo.7674800
title: Dataset for Simulation-guided engineering of split GFPs with efficient β-strand photodissociation

description: Files associated with performed experiments and simulations, including source data from experimental measurements and simulations, starting structures, parameters, simulation input files, and short videos of simulation trajectories. 
Simulation files include:

Initial coordinates of the GFP chromophore for geometry optimization and RESP calculations in GAUSSIAN
Parameter and starting files for QM/MM calculations around the conical intersection in TeraChem
Parameter, coordinate and input files for regular MD and simulated annealing simulations in AMBER
Parameter, coordinate and input files for umbrella sampling simulations of isomerization in AMBER
Results files from TeraChem
Additionally, short videos are included of simulations of the cis and trans conformations.
Experimental source data include: 

UV-vis data from strand-exchange experiments
Mass spectrometry data
Fluorescence data
DOI: 10.5281/zenodo.7674801
title: Dataset for Simulation-guided engineering of split GFPs with efficient β-strand photodissociation

description: Files associated with performed simulations, including starting structures, parameters, simulation input files, and short videos of simulation trajectories. Simulation files include: Initial coordinates of the GFP chromophore for geometry optimization and RESP calculations in GAUSSIAN Parameter and starting files for QM/MM calculations around the conical intersection in TeraChem Parameter, coordinate and input files for regular MD and simulated annealing simulations in AMBER Parameter, coordinate and input files for umbrella sampling simulations of isomerization in AMBER Additionally, short videos are included of simulations of the <em>cis</em> and <em>trans</em> conformations.
DOI: 10.5281/zenodo.10060423
title: VAPB + PTPIP51 Dataset (Obara + Nixon-Abell et al., 2023)

description: WT VAPB trajectories and raw images from cells overexpressing PTPIP51 that are used for the work generated in Obara + Nixon-Abell et al., 2023.
DOI: 10.5281/zenodo.10060451
title: Quiet-time solar interferometric imaging data from Zhang et al. 2022

description: Dataset from the paper "Imaging of the Quiet Sun in the Frequency Range of 20–80 MHz" by Peijin Zhang et al., 2022
DOI: 10.5281/zenodo.10060450
title: Quiet-time solar interferometric imaging data from Zhang et al. 2022

description: Dataset from the paper "Imaging of the Quiet Sun in the Frequency Range of 20–80 MHz" by Peijin Zhang et al., 2022
DOI: 10.5281/zenodo.10060453
title: FIB-SEM Dataset (Obara + Nixon-Abell et al., 2023)

description: Analyzed portions of FIB-SEM volumes used for analysis in Obara + Nixon-Abell et al., 2023. Full datasets are available upon request from authors, they are just too large to easily store in this medium. Email Jennifer Lippincott-Schwartz at jlippincottschwartz@janelia.hhmi.org or Christopher Obara at cjobara@gmail.com for full dataset requests.
DOI: 10.5281/zenodo.10060452
title: FIB-SEM Dataset (Obara + Nixon-Abell et al., 2023)

description: Analyzed portions of FIB-SEM volumes used for analysis in Obara + Nixon-Abell et al., 2023. Full datasets are available upon request from authors, they are just too large to easily store in this medium. Email Jennifer Lippincott-Schwartz at jlippincottschwartz@janelia.hhmi.org or Christopher Obara at cjobara@gmail.com for full dataset requests.
DOI: 10.5281/zenodo.10060243
title: A Stable Software Architecture Modularity Metric

description: Anonymous Replication Package for A Stable Software Architecture Modularity Metric
DOI: 10.5281/zenodo.10060449
title: P56S VAPB Dataset (Obara + Nixon-Abell et al., 2023)

description: P56S VAPB trajectories and raw images from cells that are used for the work generated in Obara + Nixon-Abell et al., 2023.
DOI: 10.5281/zenodo.10060242
title: A Stable Software Architecture Modularity Metric

description: Anonymous Replication Package for A Stable Software Architecture Modularity Metric
DOI: 10.5281/zenodo.10060448
title: P56S VAPB Dataset (Obara + Nixon-Abell et al., 2023)

description: P56S VAPB trajectories and raw images from cells that are used for the work generated in Obara + Nixon-Abell et al., 2023.