cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9739958
title: MOESM3 of Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

description: Additional file 3: Table S2. List of the 774 genes that are located within the 1-Mb windows that are associated with IHNV resistance in the Clear Springs Foods, Inc. rainbow trout breeding population. This data represents a list of 774 genes that are located in the QTL windows associated with IHNV resistance generated by query of the rainbow trout reference genome sequence annotation (RefSeq Accession GCF_002163495.1).
DOI: 10.6084/m9.figshare.9739958.v1
title: MOESM3 of Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

description: Additional file 3: Table S2. List of the 774 genes that are located within the 1-Mb windows that are associated with IHNV resistance in the Clear Springs Foods, Inc. rainbow trout breeding population. This data represents a list of 774 genes that are located in the QTL windows associated with IHNV resistance generated by query of the rainbow trout reference genome sequence annotation (RefSeq Accession GCF_002163495.1).
DOI: 10.6084/m9.figshare.9739964
title: MOESM4 of Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

description: Additional file 4: Table S3. Comparison of genomic windows with an explained genetic variance (EGV) higher than 1% for IHNV survival DAYS and QTL regions detected with wssGBLUP and ssBMR in the Clear Springs Foods, Inc. rainbow trout breeding population. The data provided represent all the genomic windows that had an EGV higher than 1% when performing GWAS for IHNV survival DAYS using weighted single-step GBLUP (wssGBLUP) and single-step Bayesian multiple regression (ssBMR) in the Clear Springs Foods, Inc. rainbow trout breeding population. Table S3 was built to perform a fair comparison between wssGBLUP and ssBMR GWAS methods.
DOI: 10.6084/m9.figshare.9739964.v1
title: MOESM4 of Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

description: Additional file 4: Table S3. Comparison of genomic windows with an explained genetic variance (EGV) higher than 1% for IHNV survival DAYS and QTL regions detected with wssGBLUP and ssBMR in the Clear Springs Foods, Inc. rainbow trout breeding population. The data provided represent all the genomic windows that had an EGV higher than 1% when performing GWAS for IHNV survival DAYS using weighted single-step GBLUP (wssGBLUP) and single-step Bayesian multiple regression (ssBMR) in the Clear Springs Foods, Inc. rainbow trout breeding population. Table S3 was built to perform a fair comparison between wssGBLUP and ssBMR GWAS methods.
DOI: 10.6084/m9.figshare.9739970
title: MOESM5 of Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

description: Additional file 5: Table S4. Summary of QTL for IHNV resistance reported in previous studies in rainbow trout populations. The data provided represent a summary of all reported QTL for IHNV resistance in past QTL/GWAS studies performed in rainbow trout populations. This table provides information on experimental variables including sample size, number of markers, disease phenotype, method of analysis, software, location of reported QTL on genetic and physical maps, and statistics such as nominal P value and LOD score for the reported QTL.
DOI: 10.6084/m9.figshare.9739970.v1
title: MOESM5 of Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

description: Additional file 5: Table S4. Summary of QTL for IHNV resistance reported in previous studies in rainbow trout populations. The data provided represent a summary of all reported QTL for IHNV resistance in past QTL/GWAS studies performed in rainbow trout populations. This table provides information on experimental variables including sample size, number of markers, disease phenotype, method of analysis, software, location of reported QTL on genetic and physical maps, and statistics such as nominal P value and LOD score for the reported QTL.
DOI: 10.6084/m9.figshare.9739979
title: MOESM7 of Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

description: Additional file 7: Table S5. Historical accuracy of pedigree-based EBV predictions for IHNV resistance in Clear Springs Foods, Inc. rainbow trout breeding population. These data represent the historical accuracy of animal merit predictions that were estimated with the pedigree-based PBLUP model using empirical progeny survival records from IHNV challenges performed in year-class 2008, 2010, 2012, 2014 and 2016 families in the Clear Springs Foods, Inc. rainbow trout breeding population. The accuracy of predicted EBV are estimated as the correlation coefficient of mid-parent, sire or dam EBV with their offspring or progeny survival rate.
DOI: 10.6084/m9.figshare.9739979.v1
title: MOESM7 of Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

description: Additional file 7: Table S5. Historical accuracy of pedigree-based EBV predictions for IHNV resistance in Clear Springs Foods, Inc. rainbow trout breeding population. These data represent the historical accuracy of animal merit predictions that were estimated with the pedigree-based PBLUP model using empirical progeny survival records from IHNV challenges performed in year-class 2008, 2010, 2012, 2014 and 2016 families in the Clear Springs Foods, Inc. rainbow trout breeding population. The accuracy of predicted EBV are estimated as the correlation coefficient of mid-parent, sire or dam EBV with their offspring or progeny survival rate.
DOI: 10.6084/m9.figshare.17079185.v1
title: Additional file 3 of Urinary peptidomics reveals proteases involved in idiopathic membranous nephropathy

description: Additional file 3
DOI: 10.6084/m9.figshare.17079289.v1
title: Additional file 4 of Identification of a novel metabolism-related gene signature associated with the survival of bladder cancer

description: Additional file 4: Table S3. The DEGs between normal and cancer samples in GSE13507.
DOI: 10.6084/m9.figshare.10264322
title: MOESM1 of Reconstruction and analysis of a Kluyveromyces marxianus genome-scale metabolic model

description: Additional file 1. Model file in SBML format.
DOI: 10.6084/m9.figshare.10264322.v1
title: MOESM1 of Reconstruction and analysis of a Kluyveromyces marxianus genome-scale metabolic model

description: Additional file 1. Model file in SBML format.
DOI: 10.6084/m9.figshare.9740036
title: Additional file 2: of fagin: synteny-based phylostratigraphy and finer classification of young genes

description: Supplementary files saccharomyces. (XLSX 618 kb)
DOI: 10.6084/m9.figshare.9740036.v1
title: Additional file 2: of fagin: synteny-based phylostratigraphy and finer classification of young genes

description: Supplementary files saccharomyces. (XLSX 618 kb)
DOI: 10.6084/m9.figshare.10264331
title: MOESM2 of Reconstruction and analysis of a Kluyveromyces marxianus genome-scale metabolic model

description: Additional file 2. Model file in Excel format.
DOI: 10.6084/m9.figshare.10264331.v1
title: MOESM2 of Reconstruction and analysis of a Kluyveromyces marxianus genome-scale metabolic model

description: Additional file 2. Model file in Excel format.
DOI: 10.6084/m9.figshare.9740045
title: Additional file 3: of fagin: synteny-based phylostratigraphy and finer classification of young genes

description: Supplementary files brassicaceae. (XLSX 2867 kb)
DOI: 10.6084/m9.figshare.9740045.v1
title: Additional file 3: of fagin: synteny-based phylostratigraphy and finer classification of young genes

description: Supplementary files brassicaceae. (XLSX 2867 kb)
DOI: 10.6084/m9.figshare.10264337
title: MOESM3 of Reconstruction and analysis of a Kluyveromyces marxianus genome-scale metabolic model

description: Additional file 3. The full iSM996 report from memote â the genome-scale metabolic model test suite.
DOI: 10.6084/m9.figshare.10264337.v1
title: MOESM3 of Reconstruction and analysis of a Kluyveromyces marxianus genome-scale metabolic model

description: Additional file 3. The full iSM996 report from memote â the genome-scale metabolic model test suite.
DOI: 10.6084/m9.figshare.10264343
title: MOESM4 of Reconstruction and analysis of a Kluyveromyces marxianus genome-scale metabolic model

description: Additional file 4. Biomass composition details for overall components (Sheet 1), deoxyribonucleotides (Sheet 2), ribonucleotides (Sheet 3), amino acids (Sheet 4). Also included the model performance upon chemostat conditions for the growth rate (Sheet 5), oxygen consumption (Sheet 6) and carbon dioxide production (Sheet 7). The model performance upon different carbon sources in respect of the growth rate is also included (Sheet 8). References are included in the file.
DOI: 10.6084/m9.figshare.10264343.v1
title: MOESM4 of Reconstruction and analysis of a Kluyveromyces marxianus genome-scale metabolic model

description: Additional file 4. Biomass composition details for overall components (Sheet 1), deoxyribonucleotides (Sheet 2), ribonucleotides (Sheet 3), amino acids (Sheet 4). Also included the model performance upon chemostat conditions for the growth rate (Sheet 5), oxygen consumption (Sheet 6) and carbon dioxide production (Sheet 7). The model performance upon different carbon sources in respect of the growth rate is also included (Sheet 8). References are included in the file.
DOI: 10.6084/m9.figshare.10264352
title: MOESM5 of Reconstruction and analysis of a Kluyveromyces marxianus genome-scale metabolic model

description: Additional file 5. List of inactive genes (Sheet 1) and corresponding reactions (Sheet 2) between 30D, 30DS, 30X and 45D conditions.
DOI: 10.6084/m9.figshare.10264352.v1
title: MOESM5 of Reconstruction and analysis of a Kluyveromyces marxianus genome-scale metabolic model

description: Additional file 5. List of inactive genes (Sheet 1) and corresponding reactions (Sheet 2) between 30D, 30DS, 30X and 45D conditions.
DOI: 10.6084/m9.figshare.9740099
title: Additional file 3: of Physiological analysis and transcriptome sequencing reveal the effects of combined cold and drought on tomato leaf

description: Table S1. Reads overview of the RNA-seq data in tomato at control, cold, drought and their combination. Table S2. The detailed information of the 12 differentially expressed genes (DEGs) for qRT-PCR validation. Table S3. Differentially expressed genes (DEGs) involved in reactive oxygen species (ROS) in tomato at control, cold, drought and their combination. Table S4. Differentially expressed genes (DEGs) involved in signal transduction in tomato at control, cold, drought and their combination. Table S5. Differentially expressed genes (DEGs) involved in phytohormone signal transduction in tomato at control, cold, drought and their combination. Table S6. Differentially expressed genes (DEGs) involved in photosynthetic electron transport in tomato at control, cold, drought and their combination. Table S7. Primers for qRT-PCR validation of differentially expressed genes (DEGs). (XLSX 714 kb)
DOI: 10.6084/m9.figshare.17079127.v1
title: Additional file 3 of Universal probe-based intermediate primer-triggered qPCR (UPIP-qPCR) for SNP genotyping

description: Additional file 3. GenBank accession numbers.
DOI: 10.6084/m9.figshare.9740099.v1
title: Additional file 3: of Physiological analysis and transcriptome sequencing reveal the effects of combined cold and drought on tomato leaf

description: Table S1. Reads overview of the RNA-seq data in tomato at control, cold, drought and their combination. Table S2. The detailed information of the 12 differentially expressed genes (DEGs) for qRT-PCR validation. Table S3. Differentially expressed genes (DEGs) involved in reactive oxygen species (ROS) in tomato at control, cold, drought and their combination. Table S4. Differentially expressed genes (DEGs) involved in signal transduction in tomato at control, cold, drought and their combination. Table S5. Differentially expressed genes (DEGs) involved in phytohormone signal transduction in tomato at control, cold, drought and their combination. Table S6. Differentially expressed genes (DEGs) involved in photosynthetic electron transport in tomato at control, cold, drought and their combination. Table S7. Primers for qRT-PCR validation of differentially expressed genes (DEGs). (XLSX 714 kb)
DOI: 10.6084/m9.figshare.17079130.v1
title: Additional file 4 of Universal probe-based intermediate primer-triggered qPCR (UPIP-qPCR) for SNP genotyping

description: Additional file 4. Supplementary figure legends.
DOI: 10.6084/m9.figshare.11312975
title: Bioactive metabolites in of Ginkgo biloba leaves: variations by seasonal, meteorological and soil

description: Abstract Ginkgo biloba is a traditional Chinese herbal medicine containing multiple components that contribute to its notable bioactivities. Variations of seasonal, meteorological and planting soil on the phytochemicals contents in G. biloba leaves due to the effects of growth meteorological and soil parameters were investigated in this study. The leaves of G. biloba were collected from different months and place in Zhejiang province, the contents of flavones (quercetin, kaempferol and isorhamnetin) and terpene lactones (bilobalide, ginkgolides A, B and C) were quantified by high performance liquid chromatography (HPLC) and the evaporative light scattering detector (ELSD) method. The established methods were validated with good linearity, precision, repeatability, stability, and recovery. Comprehensive analysis suggested the proper harvest time for G. biloba was in October of Zhejiang province. The result of correlation analysis with meteorological factors shows that the temperature and precipitation have non-significant effect on the main components of G. biloba. In addition, the type and content (Mn and Zn) of the soil showed significantly effect on the content of flavonoids and terpene lactones. This study enriched the knowledge on the development and utilization value of the G. biloba leaves and was useful for determining the optimal harvest time and growing condition.
DOI: 10.6084/m9.figshare.11312975.v1
title: Bioactive metabolites in of Ginkgo biloba leaves: variations by seasonal, meteorological and soil

description: Abstract Ginkgo biloba is a traditional Chinese herbal medicine containing multiple components that contribute to its notable bioactivities. Variations of seasonal, meteorological and planting soil on the phytochemicals contents in G. biloba leaves due to the effects of growth meteorological and soil parameters were investigated in this study. The leaves of G. biloba were collected from different months and place in Zhejiang province, the contents of flavones (quercetin, kaempferol and isorhamnetin) and terpene lactones (bilobalide, ginkgolides A, B and C) were quantified by high performance liquid chromatography (HPLC) and the evaporative light scattering detector (ELSD) method. The established methods were validated with good linearity, precision, repeatability, stability, and recovery. Comprehensive analysis suggested the proper harvest time for G. biloba was in October of Zhejiang province. The result of correlation analysis with meteorological factors shows that the temperature and precipitation have non-significant effect on the main components of G. biloba. In addition, the type and content (Mn and Zn) of the soil showed significantly effect on the content of flavonoids and terpene lactones. This study enriched the knowledge on the development and utilization value of the G. biloba leaves and was useful for determining the optimal harvest time and growing condition.
DOI: 10.6084/m9.figshare.17079127
title: Additional file 3 of Universal probe-based intermediate primer-triggered qPCR (UPIP-qPCR) for SNP genotyping

description: Additional file 3. GenBank accession numbers.
DOI: 10.6084/m9.figshare.9740168
title: Additional file 2: of Comparative transcription analysis of photosensitive and non-photosensitive eggplants to identify genes involved in dark regulated anthocyanin synthesis

description: Table S3. Differentially expressed genes (DEGs) in non-photosensitive eggplant. (XLSX 239 kb)
DOI: 10.6084/m9.figshare.9740168.v1
title: Additional file 2: of Comparative transcription analysis of photosensitive and non-photosensitive eggplants to identify genes involved in dark regulated anthocyanin synthesis

description: Table S3. Differentially expressed genes (DEGs) in non-photosensitive eggplant. (XLSX 239 kb)
DOI: 10.6084/m9.figshare.9740189
title: Additional file 5: of Comparative transcription analysis of photosensitive and non-photosensitive eggplants to identify genes involved in dark regulated anthocyanin synthesis

description: Table S4. Differentially expressed TFÂ genes in non-photosensitive and photosensitive eggplant. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.9740189.v1
title: Additional file 5: of Comparative transcription analysis of photosensitive and non-photosensitive eggplants to identify genes involved in dark regulated anthocyanin synthesis

description: Table S4. Differentially expressed TFÂ genes in non-photosensitive and photosensitive eggplant. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.10264505
title: MOESM2 of Organelle genome composition and candidate gene identification for Nsa cytoplasmic male sterility in Brassica napus

description: Additional file 2. Primers for verification of mitochondrial genome recombination.
DOI: 10.6084/m9.figshare.10264505.v1
title: MOESM2 of Organelle genome composition and candidate gene identification for Nsa cytoplasmic male sterility in Brassica napus

description: Additional file 2. Primers for verification of mitochondrial genome recombination.
DOI: 10.6073/pasta/0a012d9bffa94911109aad7b8447145c
title: Radiometric Characteristics of Soil Sediments from Shark River Slough, Everglades National Park (FCE) from 2005 and 2006

description: These data represent the results of radiometric dating of soil cores from Shark Slough sites, including FCE LTER sites SRS3 and SRS4 and FCE related site NE-SRS1 from November 18, 2005 to February 26, 2006. Soils from 1-cm depth increments were analyzed for bulk density and stratigraphy. These analyses contribute to a paleoecological study to quantify past changes in vegetation and soil accumulation in relation to past climate variation, fire occurrences and water management.
DOI: 10.6084/m9.figshare.10264514
title: MOESM3 of Organelle genome composition and candidate gene identification for Nsa cytoplasmic male sterility in Brassica napus

description: Additional file 3. Sequence information of genes involved in phylogenetic tree construction.
DOI: 10.6084/m9.figshare.10264514.v1
title: MOESM3 of Organelle genome composition and candidate gene identification for Nsa cytoplasmic male sterility in Brassica napus

description: Additional file 3. Sequence information of genes involved in phylogenetic tree construction.
DOI: 10.6084/m9.figshare.9740261
title: Additional file 2: of P53-R273H mutation enhances colorectal cancer stemness through regulating specific lncRNAs

description: The list of differentially expressed lncRNAs. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.20224825
title: Additional file 1 of Diminazene aceturate mitigates cardiomyopathy by interfering with renin-angiotensin system in a septic rat model

description: Additional file 1.
DOI: 10.6084/m9.figshare.9740261.v1
title: Additional file 2: of P53-R273H mutation enhances colorectal cancer stemness through regulating specific lncRNAs

description: The list of differentially expressed lncRNAs. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9740267
title: Additional file 3: of P53-R273H mutation enhances colorectal cancer stemness through regulating specific lncRNAs

description: The results of KEGG and GO analysis. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.9740267.v1
title: Additional file 3: of P53-R273H mutation enhances colorectal cancer stemness through regulating specific lncRNAs

description: The results of KEGG and GO analysis. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.9740276
title: Additional file 4: of P53-R273H mutation enhances colorectal cancer stemness through regulating specific lncRNAs

description: The list of differentially expressed protein coding genes (PCGs). (XLSX 128 kb)
DOI: 10.6084/m9.figshare.9740276.v1
title: Additional file 4: of P53-R273H mutation enhances colorectal cancer stemness through regulating specific lncRNAs

description: The list of differentially expressed protein coding genes (PCGs). (XLSX 128 kb)
DOI: 10.6084/m9.figshare.20224834.v1
title: Additional file 2 of Efficacy and safety of a 3D-printed arthrodesis prosthesis for reconstruction after resection of the proximal humerus: preliminary outcomes with a minimum 2-year follow-up

description: Additional file 2: Supplemental file 2. Raw data of the eleven patients who underwent replacement of a 3D-printed arthrodesis prosthesis after resection of the proximal humerus.
DOI: 10.6084/m9.figshare.17079158
title: Additional file 5 of miR-30b-5p inhibits proliferation, invasion, and migration of papillary thyroid cancer by targeting GALNT7 via the EGFR/PI3K/AKT pathway

description: Additional file 5. The quantitative data of Transwell assay.
DOI: 10.6084/m9.figshare.17079170
title: Additional file 9 of miR-30b-5p inhibits proliferation, invasion, and migration of papillary thyroid cancer by targeting GALNT7 via the EGFR/PI3K/AKT pathway

description: Additional file 9. The GSEA analysis on the signaling pathways.
DOI: 10.6084/m9.figshare.17079130
title: Additional file 4 of Universal probe-based intermediate primer-triggered qPCR (UPIP-qPCR) for SNP genotyping

description: Additional file 4. Supplementary figure legends.
DOI: 10.6084/m9.figshare.10264571
title: MOESM2 of Elucidating the role of shikimate dehydrogenase in controlling the production of anthocyanins and hydrolysable tannins in the outer peels of pomegranate

description: Additional file 2: Table S1. Soluble amino acid contents in pomegranate peel calli. Table S2. GC-MS metabolite dataset of pomegranate peel calli. Values are relative peak areas normalized to the norleucine internal standard. Table S3. Oligonucleotides used for the amplification and measurement of the expression of genes by qRT-PCR analysis.
DOI: 10.6084/m9.figshare.10264571.v1
title: MOESM2 of Elucidating the role of shikimate dehydrogenase in controlling the production of anthocyanins and hydrolysable tannins in the outer peels of pomegranate

description: Additional file 2: Table S1. Soluble amino acid contents in pomegranate peel calli. Table S2. GC-MS metabolite dataset of pomegranate peel calli. Values are relative peak areas normalized to the norleucine internal standard. Table S3. Oligonucleotides used for the amplification and measurement of the expression of genes by qRT-PCR analysis.
DOI: 10.6084/m9.figshare.9740285
title: Additional file 5: of P53-R273H mutation enhances colorectal cancer stemness through regulating specific lncRNAs

description: LncRNA annotation. (XLSX 107 kb)
DOI: 10.6084/m9.figshare.9740285.v1
title: Additional file 5: of P53-R273H mutation enhances colorectal cancer stemness through regulating specific lncRNAs

description: LncRNA annotation. (XLSX 107 kb)