cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17608/k6.auckland.7295702.v1
title: Supplementary Data 3. Phenotype-eGene associations in some multimorbid clusters.

description: Convex biclustering of shared eGenes among phenotypes resulted in several clusters (Supplementary Figure 4). For each eGene in a cluster, an eGene score (i.e. the percentage of the phenotypes whose associated variants affect the expression of the eGene) is calculated. This data gives for each eGene, the eGene score, number of traits with which the eGene is associated, and its eQTL pairs in the clusters around poly-unsaturated fatty acid metabolism, lung disorders, immune disorders, and mood disorders.<br>
DOI: 10.17608/k6.auckland.7295702.v2
title: Phenotype-eGene associations in some multimorbid clusters.

description: Convex biclustering of shared eGenes among phenotypes resulted in several clusters (Supplementary Figure 4). For each eGene in a cluster, an eGene score (i.e. the percentage of the phenotypes whose associated variants affect the expression of the eGene) is calculated. This data gives for each eGene, the eGene score, number of traits with which the eGene is associated, and its eQTL pairs in the clusters around poly-unsaturated fatty acid metabolism, lung disorders, immune disorders, and mood disorders.<br>
DOI: 10.17608/k6.auckland.7295702.v3
title: Phenotype-eGene associations in some multimorbid clusters.

description: Convex biclustering of shared eGenes among phenotypes resulted in several clusters (Supplementary Figure 4). For each eGene in a cluster, an eGene score (i.e. the percentage of the phenotypes whose associated variants affect the expression of the eGene) is calculated. This data gives for each eGene, the eGene score, number of traits with which the eGene is associated, and its eQTL pairs in the clusters around poly-unsaturated fatty acid metabolism, lung disorders, immune disorders, and mood disorders.<br>
DOI: 10.17608/k6.auckland.7295687
title: Pleiotropy matrices for eGenes and eQTLs

description: The Phenotype eQTL overlap sheet has names of phenotypes in columns TraitX and TraitY. The number of eQTLs identified for TraitX and TraitY are given in eQTLsX and eQTLsY. The column, Common, is the number of eQTLsY that are in eQTLsX. Ratio is Common divided by eQTLsX.<br>The Phenotype eGene overlap sheet has names of phenotypes in columns TraitX and TraitY. The number of eQTLs identified for TraitX and TraitY are given in eGenesX and eGenesY. The column, Common, is the number of eGenesY that are in eGenesX. Ratio is Common divided by eGenesX.<br>In the Control eGene overlap sheet, all 7,917 eGenes were pooled together and randomly assigned to phenotypes so that each phenotype in the control matrix had the same number of eGenes as its corresponding phenotype in the eGene matrix. The pairwise ratios of common eGenes among the phenotypes were calculated as done in the eGene matrix. 1000 different null datasets were constructed in this manner and the mean matrix was calculated. The Ratio column is the mean of 1000 null sets between phenotypes in columns TraitX and TraitY.
DOI: 10.7284/105919
title: TSG (Thermosalinograph) data collected during research cruise SAV-10-34 using a Sea-Bird SBE-21 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17608/k6.auckland.7295681
title: eGenes identified in GWAS traits

description: Chromatin interactions (using Hi-C) and functional (using eQTL) data were used to identify long-range regulatory associations involving &gt;20,000 GWAS variants and their target genes (i.e. eGenes). This dataset contains eGenes identified in &gt;1,350 traits, together with their associated eQTL SNPs.
DOI: 10.17608/k6.auckland.7295681.v1
title: eGenes identified in GWAS traits

description: Chromatin interactions (using Hi-C) and functional (using eQTL) data were used to identify long-range regulatory associations involving &gt;20,000 GWAS variants and their target genes (i.e. eGenes). This dataset contains eGenes identified in &gt;1,350 traits, together with their associated eQTL SNPs.
DOI: 10.7284/105926
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SAV-10-35 using a Sea-Bird SBE-25 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17608/k6.auckland.7295687.v2
title: Pleiotropy matrices for eGenes and eQTLs

description: The Phenotype eQTL overlap sheet has names of phenotypes in columns TraitX and TraitY. The number of eQTLs identified for TraitX and TraitY are given in eQTLsX and eQTLsY. The column, Common, is the number of eQTLsY that are in eQTLsX. Ratio is Common divided by eQTLsX.<br>The Phenotype eGene overlap sheet has names of phenotypes in columns TraitX and TraitY. The number of eQTLs identified for TraitX and TraitY are given in eGenesX and eGenesY. The column, Common, is the number of eGenesY that are in eGenesX. Ratio is Common divided by eGenesX.<br>In the Control eGene overlap sheet, all 7,917 eGenes were pooled together and randomly assigned to phenotypes so that each phenotype in the control matrix had the same number of eGenes as its corresponding phenotype in the eGene matrix. The pairwise ratios of common eGenes among the phenotypes were calculated as done in the eGene matrix. 1000 different null datasets were constructed in this manner and the mean matrix was calculated. The Ratio column is the mean of 1000 null sets between phenotypes in columns TraitX and TraitY.
DOI: 10.17608/k6.auckland.7295687.v1
title: Pleiotropy matrices for eGenes and eQTLs

description: The Phenotype eQTL overlap sheet has names of phenotypes in columns TraitX and TraitY. The number of eQTLs identified for TraitX and TraitY are given in eQTLsX and eQTLsY. The column, Common, is the number of eQTLsY that are in eQTLsX. Ratio is Common divided by eQTLsX.<br>The Phenotype eGene overlap sheet has names of phenotypes in columns TraitX and TraitY. The number of eQTLs identified for TraitX and TraitY are given in eGenesX and eGenesY. The column, Common, is the number of eGenesY that are in eGenesX. Ratio is Common divided by eGenesX.<br>In the Control eGene overlap sheet, all 7,917 eGenes were pooled together and randomly assigned to phenotypes so that each phenotype in the control matrix had the same number of eGenes as its corresponding phenotype in the eGene matrix. The pairwise ratios of common eGenes among the phenotypes were calculated as done in the eGene matrix. 1000 different null datasets were constructed in this manner and the mean matrix was calculated. The Ratio column is the mean of 1000 null sets between phenotypes in columns TraitX and TraitY.
DOI: 10.7284/105921
title: GNSS (Global Navigation Satellite System) data collected during research cruise SAV-10-35 using a Furuno GP-90 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105922
title: Gyrocompass data collected during research cruise SAV-10-35 using a Yokogawa CMZ700B instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105924
title: Meteorological Station data collected during research cruise SAV-10-35 using a RM Young 26800 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105923
title: Singlebeam Echosounder data collected during research cruise SAV-10-35 using a Furuno FCV-582 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7295606
title: Compartment models for the electrical stimulation of retinal bipolar cells

description: This file contains all data need for producing the four figures of fig.3 in related paper. The files produce the transmembrane voltages of all SCM, TCM, FCM, and MCM in active case while the passive formats would be calculated by removing all ion channels from the program by putting all ion channels conductance equal to zero and put usually, not always,the E-L equal to the V_rest. In case of any question, don't hesitate to contact me. <br>
DOI: 10.7284/105925
title: TSG (Thermosalinograph) data collected during research cruise SAV-10-35 using a Sea-Bird SBE-21 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105929
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SAV-10-36 using a RDI WM-300 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105933
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SAV-10-36 using a Sea-Bird SBE-25 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7295540
title: LIMPID Labelled and Interlinked Micronanoparticles for Imaging and Delipidation--Raw Data.xlsx

description: Statistical analysis of the vessel diameter and length of individual vessel segment, and 3D vascular quantitative features. Fluorescence spectroscopy measurement of ，fuorescent dyes and ，fuorescent microparticles.
DOI: 10.7284/105927
title: GNSS (Global Navigation Satellite System) data collected during research cruise SAV-10-36 using a Furuno GP-90 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7295540.v1
title: LIMPID Labelled and Interlinked Micronanoparticles for Imaging and Delipidation--Raw Data.xlsx

description: Statistical analysis of the vessel diameter and length of individual vessel segment, and 3D vascular quantitative features. Fluorescence spectroscopy measurement of ，fuorescent dyes and ，fuorescent microparticles.
DOI: 10.7284/105928
title: Gyrocompass data collected during research cruise SAV-10-36 using a Yokogawa CMZ700B instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7295522
title: Do musicians learn a fine sequential hand motor skill differently than non-musicians?

description: Data underlying the findings reported in a submitted manuscript entitled "Do musicians learn a fine sequential hand motor skill differently than non-musicians?"
DOI: 10.6084/m9.figshare.7295537.v1
title: Suppl - Lower FT3 within the reference range is associated with higher cardiovascular mortality.pdf

description: Supplemental Material of "Lower FT3 within the reference range is associated with higher cardiovascular mortality: an analysis of the NHANES"
DOI: 10.7284/105931
title: Meteorological Station data collected during research cruise SAV-10-36 using a RM Young 26800 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7295516
title: Effects of cold on murine brain mitochondrial function

description: CSV files from the Oroboros oxygraph datlab files; excel file "File labels_mice" specifies which files correspond to MS figure
DOI: 10.6084/m9.figshare.7295513
title: Red Weevil 10xGenomics 2nd run fastQC

description: Red Weevil 10xGenomics 2nd run fastQC
DOI: 10.6084/m9.figshare.7295516.v1
title: Effects of cold on murine brain mitochondrial function

description: CSV files from the Oroboros oxygraph datlab files; excel file "File labels_mice" specifies which files correspond to MS figure
DOI: 10.7284/105930
title: Singlebeam Echosounder data collected during research cruise SAV-10-36 using a Furuno FCV-582 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7295513.v1
title: Red Weevil 10xGenomics 2nd run fastQC

description: Red Weevil 10xGenomics 2nd run fastQC
DOI: 10.6084/m9.figshare.7295498
title: LIMPID Labelled and Interlinked Micronanoparticles for Imaging and Delipidation--Raw Data.xlsx

description: Statistical analysis of the vessel diameter and length of individual vessel segment, and 3D vascular quantitative features. Fluorescence spectroscopy measurement of ﬂuorescent dyes and ﬂuorescent microparticles. <br>
DOI: 10.6084/m9.figshare.7295498.v1
title: LIMPID Labelled and Interlinked Micronanoparticles for Imaging and Delipidation--Raw Data.xlsx

description: Statistical analysis of the vessel diameter and length of individual vessel segment, and 3D vascular quantitative features. Fluorescence spectroscopy measurement of ﬂuorescent dyes and ﬂuorescent microparticles. <br>
DOI: 10.7284/105932
title: TSG (Thermosalinograph) data collected during research cruise SAV-10-36 using a Sea-Bird SBE-21 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7295486
title: Data and code for: Partitioning mortality into growth-dependent and growth-independent hazards across 203 tropical tree species (PNAS).

description: <b>Partitioning mortality into growth-dependent and growth-independent hazards across 203 tropical tree species</b>James S Camac, Richard Condit, Richard G FitzJohn, Lachlan McCalman,Daniel Steinberg, Mark Westoby, Joe Wright, Daniel Falster<br>We present a model that partitions rates of tropical tree mortality into growth-dependent and growth-independent hazards. This creates the opportunity to examine the relative contributions of within-species and across-species variation on tropical tree mortality rates, but also, how species traits affect each hazard. We parameterize this model using &gt;400,000 observed survival records collected over a 15-year period at Barro Colorado Island from more than 180,000 individuals across 203 species. We show that marginal carbon budgets are a major contributor to tree death on Barro Colorado Island. Moreover, we found that while species' light demand, maximum dbh and wood density affected tree mortality in different ways, they explained only a small fraction of the total variability observed among species.<br>This repository contains the data and code required to reproduce our entire workflow from data cleaning, rerunning the analysis, producing figures and reproducing the manuscript.<br>## PublicationCamac, J.S., Condit, R., FitzJohn, R.G., McCalman, L., Steinberg, D., Westoby, M., Wright, S.J., Falster, D. (Accepted at PNAS) Partitioning mortality into growth-dependent and growth-independent hazards across 203 tropical tree species.<br>
DOI: 10.6084/m9.figshare.7295492
title: Morphometrical analysis of <i>Ceiba</i> Mill. (Bombacoideae, Malvaceae) pollen: a sacred plant of the Mayan (Mesoamerican) civilisation

description: <i>Ceiba</i>, is a large tree used for ornamental landscaping in tropical regions of the world. It is found in tropical areas, including Mexico, Central America, South America, the Caribbean, West Africa, and Southeast Asia. The present work communicates the detailed pollen morphology of four <i>Ceiba</i> species growing in India including one hybrid, <i>C. speciosa</i> (A.St.-Hil.) Ravenna, <i>C. insignis</i> (Kunth) P. E. Gibbs & Semir, <i>C</i>. x <i>insignis</i> (cross between <i>C. insignis</i> and <i>C. speciosa</i>) and <i>C. pentandra</i> (L.) Gaertn., using Field Emission Scanning Electron Microscope (FESEM), Confocal Laser Scanning Microscope (CLSM) and Light Microscope (LM) to highlight the taxonomic characterization of these species and document finer morphological details to correlate them with other <i>Ceiba</i> spp., growing around the world. Pollen grain is 4-5-colporate, brevicolpate; sub-oblate to prolate-spheroidal to sub-prolate; sexine reticulate (muri provided with scattered spinuloid excrescences, lumina reticolumellate) and mostly thicker than nexine. The multivariate principal component analysis (PCA) was applied on <i>Ceiba</i> and <i>Bombax ceiba</i> to numerical data obtained from pollen morphometry which clearly revealed a significant variation between different genus and species. A pollen key, based on these micromorphological data (especially pollen aperture and size of muri), is also presented for the <i>Ceiba</i> and <i>B. ceiba</i>. The study provides an analogue for precise identification of <i>Ceiba</i> pollen grains recovered in Quaternary and pre-Quaternary sedimentary deposits in India and other tropical and subtropical regions of the world. Besides, pollen preservation, evolutionary trend and palaeoecology are the other important implications of this study.
DOI: 10.6084/m9.figshare.7295474
title: EI_NI_CRO_SER_2016.sav

description: Data on European and national identity in Croatia and Serbia <br>
DOI: 10.7284/105939
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SAV-10-37 using a Sea-Bird SBE-25 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7295474.v1
title: EI_NI_CRO_SER_2016.sav

description: Data on European and national identity in Croatia and Serbia <br>
DOI: 10.7284/105934
title: GNSS (Global Navigation Satellite System) data collected during research cruise SAV-10-37 using a Furuno GP-90 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105935
title: Gyrocompass data collected during research cruise SAV-10-37 using a Yokogawa CMZ700B instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105937
title: Meteorological Station data collected during research cruise SAV-10-37 using a RM Young 26800 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7295435
title: Additional file 6: of Comparing allele specific expression and local expression quantitative trait loci and the influence of gene expression on complex trait variation in cattle

description: Table S15. Overlap between eQTL and QTL for each gene. The detailed results of Χ2 tests for comparing QTL and eQTL for each individual gene (p
DOI: 10.6084/m9.figshare.7295435.v1
title: Additional file 6: of Comparing allele specific expression and local expression quantitative trait loci and the influence of gene expression on complex trait variation in cattle

description: Table S15. Overlap between eQTL and QTL for each gene. The detailed results of Χ2 tests for comparing QTL and eQTL for each individual gene (p
DOI: 10.7284/105936
title: Singlebeam Echosounder data collected during research cruise SAV-10-37 using a Furuno FCV-582 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7295432
title: Additional file 5: of Comparing allele specific expression and local expression quantitative trait loci and the influence of gene expression on complex trait variation in cattle

description: Table S14. Overlap between eQTL and QTL. The detailed results of Χ2 tests for comparing QTL and eQTL to find whether SNP associated with conventional phenotypes (QTL) are also associated with gene expression in the local eQTL or ASE analyses (p
DOI: 10.6084/m9.figshare.7295432.v1
title: Additional file 5: of Comparing allele specific expression and local expression quantitative trait loci and the influence of gene expression on complex trait variation in cattle

description: Table S14. Overlap between eQTL and QTL. The detailed results of Χ2 tests for comparing QTL and eQTL to find whether SNP associated with conventional phenotypes (QTL) are also associated with gene expression in the local eQTL or ASE analyses (p
DOI: 10.7284/105938
title: TSG (Thermosalinograph) data collected during research cruise SAV-10-37 using a Sea-Bird SBE-21 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105945
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SAV-10-38 using a Sea-Bird SBE-25 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105940
title: GNSS (Global Navigation Satellite System) data collected during research cruise SAV-10-38 using a Furuno GP-90 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105941
title: Gyrocompass data collected during research cruise SAV-10-38 using a Yokogawa CMZ700B instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105943
title: Meteorological Station data collected during research cruise SAV-10-38 using a RM Young 26800 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105942
title: Singlebeam Echosounder data collected during research cruise SAV-10-38 using a Furuno FCV-582 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105944
title: TSG (Thermosalinograph) data collected during research cruise SAV-10-38 using a Sea-Bird SBE-21 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7295387
title: Additional file 2: of Mosaic mitochondrial-plastid insertions into the nuclear genome show evidence of both non-homologous end joining and homologous recombination

description: Table S2. Complex insertions with long homology. Table contains information about 16 insertions that show long homology. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7295387.v1
title: Additional file 2: of Mosaic mitochondrial-plastid insertions into the nuclear genome show evidence of both non-homologous end joining and homologous recombination

description: Table S2. Complex insertions with long homology. Table contains information about 16 insertions that show long homology. (XLSX 13 kb)
DOI: 10.7284/105951
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SAV-10-40 using a Sea-Bird SBE-25 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7295381
title: Additional file 4: of Comparing allele specific expression and local expression quantitative trait loci and the influence of gene expression on complex trait variation in cattle

description: Table S13. GWAS using imputed whole genome sequence data. The detailed results of p-values for each SNP in GWA study for residual feed intake. (CSV 674497Â kb)
DOI: 10.7284/105946
title: GNSS (Global Navigation Satellite System) data collected during research cruise SAV-10-40 using a Furuno GP-90 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7295381.v1
title: Additional file 4: of Comparing allele specific expression and local expression quantitative trait loci and the influence of gene expression on complex trait variation in cattle

description: Table S13. GWAS using imputed whole genome sequence data. The detailed results of p-values for each SNP in GWA study for residual feed intake. (CSV 674497Â kb)
DOI: 10.6084/m9.figshare.7295378
title: Additional file 1: of Mosaic mitochondrial-plastid insertions into the nuclear genome show evidence of both non-homologous end joining and homologous recombination

description: Table S1. Organelle insertions identified in nine plant species. Table contains information about the location of all events (numts, nupts, and numins) identified in the nine species analyzed. (XLSX 1714 kb)