cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5ng4h563
title: MassIVE MSV000100922 - 2-O-methylation Maintains Ribosome Structural and Translation Integrity
title: In eukaryotic ribosomes, ~2% of RNA nucleotides undergo 2'-O-methylation, a conserved cellular mechanism thought to be critical for maintaining and regulating translation. Here, we use ribosome profiling, translation assays, proteomics, and high-resolution structural analyses to show that loss of native 2'-O-methylation in yeast ribosomes disproportionally affect the translation of ribosomal protein transcripts, driven by changes in codon usage and recognition of structured RNA. Translation reprograming by the hypomethylated ribosomes is supported by reduced thermostability and high-resolution evidence of altered ribosomal structures and conformations. Consistent with the roles of the affected proteins in sustaining cellular fitness, hypomethylated ribosomes under stress exhibit selective loss of downregulated proteins and misassembly associated with methylation loss. Our data provide structural and mechanistic insights into how 2'-O-methylation supports ribosome integrity and mediates cellular stress responses.
DOI: 10.25549/uschist-c104-231369
title: Southern California alumni review, vol. 31, no. 3 (1949 Nov.)

description: Southern California alumni review, vol. 31, no. 3 (1949 November). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231374
title: Southern California alumni review, vol. 31, no. 3 (1949 Nov.)

description: Southern California alumni review, vol. 31, no. 3 (1949 November). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231376
title: Southern California alumni review, vol. 31, no. 3 (1949 Nov.)

description: Southern California alumni review, vol. 31, no. 3 (1949 November). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231691
title: Southern California alumni review, vol. 32, no. 7 (1951 Mar.)

description: Southern California alumni review, vol. 32, no. 7 (1951 March). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231698
title: Southern California alumni review, vol. 32, no. 7 (1951 Mar.)

description: Southern California alumni review, vol. 32, no. 7 (1951 March). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231703
title: Southern California alumni review, vol. 32, no. 7 (1951 Mar.)

description: Southern California alumni review, vol. 32, no. 7 (1951 March). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231711
title: Southern California alumni review, vol. 32, no. 7 (1951 Mar.)

description: Southern California alumni review, vol. 32, no. 7 (1951 March). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231718
title: Southern California alumni review, vol. 32, no. 8 (1951 Apr.)

description: Southern California alumni review, vol. 32, no. 8 (1951 April). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-250634
title: Southern California alumni review, vol. 31, no. 4 (1949 Dec.)

description: Southern California alumni review, vol. 31, no. 4 (1949 December). Published ten times a year, monthly from September to June inclusive.
DOI: 10.25549/uschist-c104-250642
title: Southern California alumni review, vol. 31, no. 4 (1949 Dec.)

description: Southern California alumni review, vol. 31, no. 4 (1949 December). Published ten times a year, monthly from September to June inclusive.
DOI: 10.25549/uschist-c104-250645
title: Southern California alumni review, vol. 31, no. 4 (1949 Dec.)

description: Southern California alumni review, vol. 31, no. 4 (1949 December). Published ten times a year, monthly from September to June inclusive.
DOI: 10.25549/uschist-c104-250650
title: Southern California alumni review, vol. 31, no. 4 (1949 Dec.)

description: Southern California alumni review, vol. 31, no. 4 (1949 December). Published ten times a year, monthly from September to June inclusive.
DOI: 10.25549/uschist-c104-250656
title: Southern California alumni review, vol. 31, no. 4 (1949 Dec.)

description: Southern California alumni review, vol. 31, no. 4 (1949 December). Published ten times a year, monthly from September to June inclusive.
DOI: 10.25549/uschist-c104-231633
title: Southern California alumni review, vol. 32, no. 5 (1951 Jan.)

description: Southern California alumni review, vol. 32, no. 5 (1951 January). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231637
title: Southern California alumni review, vol. 32, no. 5 (1951 Jan.)

description: Southern California alumni review, vol. 32, no. 5 (1951 January). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231643
title: Southern California alumni review, vol. 32, no. 5 (1951 Jan.)

description: Southern California alumni review, vol. 32, no. 5 (1951 January). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231644
title: Southern California alumni review, vol. 32, no. 5 (1951 Jan.)

description: Southern California alumni review, vol. 32, no. 5 (1951 January). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.15468/dl.tws4jh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oxyethira longipenis",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032921-260208012135463/datasets/export for details.
DOI: 10.25549/uschist-c104-231648
title: Southern California alumni review, vol. 32, no. 5 (1951 Jan.)

description: Southern California alumni review, vol. 32, no. 5 (1951 January). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-250661
title: Southern California alumni review, vol. 31, no. 4 (1949 Dec.)

description: Southern California alumni review, vol. 31, no. 4 (1949 December). Published ten times a year, monthly from September to June inclusive.
DOI: 10.25549/uschist-c104-231388
title: Southern California alumni review, vol. 31, no. 5 (1950 Jan.)

description: Southern California alumni review, vol. 31, no. 5 (1950 January). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231398
title: Southern California alumni review, vol. 31, no. 5 (1950 Jan.)

description: Southern California alumni review, vol. 31, no. 5 (1950 January). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.5281/zenodo.18705527
title: Long-read sequencing reveals structural variations associated with erucic acid biosynthesis in Brassica napus

description: Rapeseed (Brassica napus L.) is an important oilseed crop worldwide, with high erucic acid rapeseed (HEAR) cultivars valued for commercial and industrial uses. Despite the availability of multiple reference genomes, the genetic basis underlying erucic acid biosynthesis remains poorly characterized, particularly in HEAR cultivars in B. napus. Structural variations (SVs) are known to influence key agronomic traits, yet their contribution to high erucic acid accumulation has not been systematically investigated. In this study, we present a high-quality reference-aligned genome assembly of the HEAR genotype 13R4502 (UM_B.napus Ver1) using PacBio HiFi long-read sequencing. The assembly spans ~1.03 Gb across 19 pseudochromosomes, comprising 107,468 high-confidence protein-coding genes and ~60% repetitive content. Assembly completeness was confirmed with 99.6% complete BUSCO genes, and extensive repeat annotation revealed a predominance of Helitrons, indicating historical transposition events. Furthermore, systematic profiling and comparative genomics to low erucic acid cultivars (LEA) (ZS11) identified 3,450 structural variants (SVs) affecting key genes involved in fatty acid biosynthesis including (FAD2, FAE, and multiple KCS paralogs). The UM_B.napus Ver1 genome provides reference for HEAR cultivars, capturing SVs previously inaccessible with low erucic acid LEA references. The genomic resource created in this study enables functional characterization of genes controlling erucic acid biosynthesis and offers a foundation for precision breeding and metabolic engineering in B. napus. Additionally, this assembly demonstrates the utility of long-read sequencing combined with reference-guided scaffolding to attain high structural accuracy and gene completeness in complex polyploid genomes.
DOI: 10.25549/uschist-c104-231400
title: Southern California alumni review, vol. 31, no. 5 (1950 Jan.)

description: Southern California alumni review, vol. 31, no. 5 (1950 January). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.5281/zenodo.18705526
title: Long-read sequencing reveals structural variations associated with erucic acid biosynthesis in Brassica napus

description: Rapeseed (Brassica napus L.) is an important oilseed crop worldwide, with high erucic acid rapeseed (HEAR) cultivars valued for commercial and industrial uses. Despite the availability of multiple reference genomes, the genetic basis underlying erucic acid biosynthesis remains poorly characterized, particularly in HEAR cultivars in B. napus. Structural variations (SVs) are known to influence key agronomic traits, yet their contribution to high erucic acid accumulation has not been systematically investigated. In this study, we present a high-quality reference-aligned genome assembly of the HEAR genotype 13R4502 (UM_B.napus Ver1) using PacBio HiFi long-read sequencing. The assembly spans ~1.03 Gb across 19 pseudochromosomes, comprising 107,468 high-confidence protein-coding genes and ~60% repetitive content. Assembly completeness was confirmed with 99.6% complete BUSCO genes, and extensive repeat annotation revealed a predominance of Helitrons, indicating historical transposition events. Furthermore, systematic profiling and comparative genomics to low erucic acid cultivars (LEA) (ZS11) identified 3,450 structural variants (SVs) affecting key genes involved in fatty acid biosynthesis including (FAD2, FAE, and multiple KCS paralogs). The UM_B.napus Ver1 genome provides reference for HEAR cultivars, capturing SVs previously inaccessible with low erucic acid LEA references. The genomic resource created in this study enables functional characterization of genes controlling erucic acid biosynthesis and offers a foundation for precision breeding and metabolic engineering in B. napus. Additionally, this assembly demonstrates the utility of long-read sequencing combined with reference-guided scaffolding to attain high structural accuracy and gene completeness in complex polyploid genomes.
DOI: 10.25549/uschist-c104-231401
title: Southern California alumni review, vol. 31, no. 5 (1950 Jan.)

description: Southern California alumni review, vol. 31, no. 5 (1950 January). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231410
title: Southern California alumni review, vol. 31, no. 5 (1950 Jan.)

description: Southern California alumni review, vol. 31, no. 5 (1950 January). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231412
title: Southern California alumni review, vol. 31, no. 5 (1950 Jan.)

description: Southern California alumni review, vol. 31, no. 5 (1950 January). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231422
title: Southern California alumni review, vol. 31, no. 6 (1950 Feb.)

description: Southern California alumni review, vol. 31, no. 6 (1950 February). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231426
title: Southern California alumni review, vol. 31, no. 6 (1950 Feb.)

description: Southern California alumni review, vol. 31, no. 6 (1950 February). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231427
title: Southern California alumni review, vol. 31, no. 6 (1950 Feb.)

description: Southern California alumni review, vol. 31, no. 6 (1950 February). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231570
title: Southern California alumni review, vol. 32, no. 3 (1950 Nov.)

description: Southern California alumni review, vol. 32, no. 3 (1950 November). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231573
title: Southern California alumni review, vol. 32, no. 3 (1950 Nov.)

description: Southern California alumni review, vol. 32, no. 3 (1950 November). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231574
title: Southern California alumni review, vol. 32, no. 3 (1950 Nov.)

description: Southern California alumni review, vol. 32, no. 3 (1950 November). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231579
title: Southern California alumni review, vol. 32, no. 3 (1950 Nov.)

description: Southern California alumni review, vol. 32, no. 3 (1950 November). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231588
title: Southern California alumni review, vol. 32, no. 3 (1950 Nov.)

description: Southern California alumni review, vol. 32, no. 3 (1950 November). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231589
title: Southern California alumni review, vol. 32, no. 3 (1950 Nov.)

description: Southern California alumni review, vol. 32, no. 3 (1950 November). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231597
title: Southern California alumni review, vol. 32, no. 4 (1950 Dec.)

description: Southern California alumni review, vol. 32, no. 4 (1950 December). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231612
title: Southern California alumni review, vol. 32, no. 4 (1950 Dec.)

description: Southern California alumni review, vol. 32, no. 4 (1950 December). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231624
title: Southern California alumni review, vol. 32, no. 4 (1950 Dec.)

description: Southern California alumni review, vol. 32, no. 4 (1950 December). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231632
title: Southern California alumni review, vol. 32, no. 5 (1951 Jan.)

description: Southern California alumni review, vol. 32, no. 5 (1951 January). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231727
title: Southern California alumni review, vol. 32, no. 8 (1951 Apr.)

description: Southern California alumni review, vol. 32, no. 8 (1951 April). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231728
title: Southern California alumni review, vol. 32, no. 8 (1951 Apr.)

description: Southern California alumni review, vol. 32, no. 8 (1951 April). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231749
title: Southern California alumni review, vol. 32, no. 9 (1951 May)

description: Southern California alumni review, vol. 32, no. 9 (1951 May). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231758
title: Southern California alumni review, vol. 32, no. 9 (1951 May)

description: Southern California alumni review, vol. 32, no. 9 (1951 May). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231760
title: Southern California alumni review, vol. 32, no. 9 (1951 May)

description: Southern California alumni review, vol. 32, no. 9 (1951 May). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231687
title: Southern California alumni review, vol. 32, no. 7 (1951 Mar.)

description: Southern California alumni review, vol. 32, no. 7 (1951 March). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231688
title: Southern California alumni review, vol. 32, no. 7 (1951 Mar.)

description: Southern California alumni review, vol. 32, no. 7 (1951 March). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231690
title: Southern California alumni review, vol. 32, no. 7 (1951 Mar.)

description: Southern California alumni review, vol. 32, no. 7 (1951 March). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231714
title: Southern California alumni review, vol. 32, no. 8 (1951 Apr.)

description: Southern California alumni review, vol. 32, no. 8 (1951 April). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231720
title: Southern California alumni review, vol. 32, no. 8 (1951 Apr.)

description: Southern California alumni review, vol. 32, no. 8 (1951 April). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-250677
title: Southern California alumni review, vol. 32, no. 2 (1950 Oct.)

description: Southern California alumni review, vol. 32, no. 2 (1950 October). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-250679
title: Southern California alumni review, vol. 32, no. 2 (1950 Oct.)

description: Southern California alumni review, vol. 32, no. 2 (1950 October). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.13012/b2idb-7041730_v1
title: Improving individual committor estimates and data efficiency in reaction coordinate tests with the Empirical Bayes method

description: The dataset contains a jupyter notebook intended for anyone who wants to apply the Empirical Bayes method described in the paper titled 'Data for Improving individual committor estimates and data efficiency in reaction coordinate tests with the Empirical Bayes method' to committor data with a simple and lucid python script.
DOI: 10.25549/uschist-c104-250682
title: Southern California alumni review, vol. 32, no. 2 (1950 Oct.)

description: Southern California alumni review, vol. 32, no. 2 (1950 October). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-250684
title: Southern California alumni review, vol. 32, no. 2 (1950 Oct.)

description: Southern California alumni review, vol. 32, no. 2 (1950 October). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-250686
title: Southern California alumni review, vol. 32, no. 2 (1950 Oct.)

description: Southern California alumni review, vol. 32, no. 2 (1950 October). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.15468/dl.h44w7e
title: Occurrence Download

description: A dataset containing 13741 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fundulus notatus",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 13741 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032924-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/uschist-c104-231721
title: Southern California alumni review, vol. 32, no. 8 (1951 Apr.)

description: Southern California alumni review, vol. 32, no. 8 (1951 April). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231734
title: Southern California alumni review, vol. 32, no. 8 (1951 Apr.)

description: Southern California alumni review, vol. 32, no. 8 (1951 April). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231740
title: Southern California alumni review, vol. 32, no. 8 (1951 Apr.)

description: Southern California alumni review, vol. 32, no. 8 (1951 April). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231744
title: Southern California alumni review, vol. 32, no. 9 (1951 May)

description: Southern California alumni review, vol. 32, no. 9 (1951 May). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231746
title: Southern California alumni review, vol. 32, no. 9 (1951 May)

description: Southern California alumni review, vol. 32, no. 9 (1951 May). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231754
title: Southern California alumni review, vol. 32, no. 9 (1951 May)

description: Southern California alumni review, vol. 32, no. 9 (1951 May). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231768
title: Southern California alumni review, vol. 32, no. 9 (1951 May)

description: Southern California alumni review, vol. 32, no. 9 (1951 May). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231773
title: Southern California alumni review, vol. 32, no. 9 (1951 May)

description: Southern California alumni review, vol. 32, no. 9 (1951 May). Published nine times a year, monthly from September to May, inclusive.
DOI: 10.25549/uschist-c104-231813
title: Southern California alumni review, vol. 33, no. 2 (1951 Nov.)

description: Southern California alumni review, vol. 33, no. 2 (1951 November). Published eight times a year, monthly from October to June, inclusive.
DOI: 10.25549/uschist-c104-231814
title: Southern California alumni review, vol. 33, no. 2 (1951 Nov.)

description: Southern California alumni review, vol. 33, no. 2 (1951 November). Published eight times a year, monthly from October to June, inclusive.
DOI: 10.15156/bio/sh1387218.10fu
title: SH1387218.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.