cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14581398
title: Seurat object created using a scRNAseq dataset derived from malignant cells isolated from BRAF mutant patient-derived xenograft melanoma cohorts exposed to concurrent RAF/MEK-inhibition (Rambow et al., 2018. Cell)

description: The file is a Seurat object obtained by the re-analysis of the dataset published by Rambow et al., 2018, and is related to the paper "TGFβ signaling sensitizes MEKi-resistant human melanoma to targeted therapy-induced apoptosis" (Loos, Salas-Bastos, Nordin et al. Cell Death Dis 15, 925 (2024). https://doi.org/10.1038/s41419-024-07305-1)
description: In their original publication, the authors mention that the dataset was analysed using a pipeline conceptually similar to PAGODA. Here, we performed the re-analysis of the dataset using the Seurat package (version 4.0.1) while retaining all the cells included in the original publication. Moreover, we used the annotations provided by the authors and subset the object for specific cell states of interest, specifically SMC, NCSC, invasive and pigmented cell states
DOI: 10.5281/zenodo.14581399
title: Seurat object created using a scRNAseq dataset derived from malignant cells isolated from BRAF mutant patient-derived xenograft melanoma cohorts exposed to concurrent RAF/MEK-inhibition (Rambow et al., 2018. Cell)

description: The file is a Seurat object obtained by the re-analysis of the dataset published by Rambow et al., 2018, and is related to the paper "TGFβ signaling sensitizes MEKi-resistant human melanoma to targeted therapy-induced apoptosis" (Loos, Salas-Bastos, Nordin et al. Cell Death Dis 15, 925 (2024). https://doi.org/10.1038/s41419-024-07305-1)
description: In their original publication, the authors mention that the dataset was analysed using a pipeline conceptually similar to PAGODA. Here, we performed the re-analysis of the dataset using the Seurat package (version 4.0.1) while retaining all the cells included in the original publication. Moreover, we used the annotations provided by the authors and subset the object for specific cell states of interest, specifically SMC, NCSC, invasive and pigmented cell states
DOI: 10.34740/kaggle/dsv/10362663
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.17179/excli2024-7980_supplementary_data
title: Characterizing psychological states in professional athletes through EEG: sex-based differences

description: The psychological states are essential to maintain a healthy balance and optimize performance, especially in athletes. Sex-related differences in elite athletes are one of the important factors, which are ambiguous. This study aims to explore sex differences in psychological states of 36 professional athletes (12M/24F, 21.6±3.9 y, 166.3±8.9 cm, 56.4±11.3 kg, mean±SD) in the lead-up to a major international competition using objective (quantitative electroencephalogram, QEEG) and subjective measures (Athletic Coping Skills Inventory, ASCI-28). Participants included fifteen gymnasts, eleven swimmers, and ten e-sports players. QEEG measurements were collected during 5 minutes at rest before athletes completed the ASCI-28 scale. Data were obtained during training camp within 3 months before the competition. QEEG data were analyzed using a generalized linear mixed modeling (GLMM) to report the linear predictor of QEEG in brain areas (random) and sex (fixed). A multivariate analysis of variance (MANOVA) was applied to ACSI-28 subscales data to compare sex groups. Female athletes exhibited higher EEG activity in the theta power in the parietal and occipital areas and the beta power in the pre-frontal and temporal areas. Furthermore, significant sex differences were found in the coping with adversity (p =0.038) and goal setting/mental preparation subscales of the ACSI-28. The correlations between the QEEG and questionnaire scores were low to moderate correlations for female athletes, and moderate correlations for male athletes. A significant correlation was observed in both male and female athletes between activity in the temporal region within theta and beta frequency bands (QEEG), and the coping with aversity subscale (questionnaire). These findings provide valuable insights for sports psychologists to design appropriate psychological interventions and for future studies examining the impact of differential psychological interventions for male and female athletes to optimize well-being and performance.
description: EXCLI Journal; 24:Doc1; ISSN 1611-2156
DOI: 10.6084/m9.figshare.28129907
title: Dyngen simulated dataset

description: Fifty scRNA-seq datasets simulated using Dyngen (https://www.nature.com/articles/s41467-021-24152-2)
DOI: 10.6084/m9.figshare.28124615
title: Zebrafish neural crest cells development

description: Zebrafish neural crest cell development dataset, please see Wang <i>et al.</i> (https://www.biorxiv.org/content/10.1101/2024.12.11.627935v1) and Hu <i>et al</i>. (https://www.biorxiv.org/content/10.1101/2024.09.17.613303v1) for details
DOI: 10.6084/m9.figshare.28124579
title: Pancreatic endocrinogenesis

description: Pancreatic endocrinogenesis dataset, original from Bastidas-Ponce <i>et al</i>. (https://doi.org/10.1242/dev.173849)
DOI: 10.6084/m9.figshare.28124558
title: Hematopoiesis

description: Hematopoiesis dataset, original from Qiu <i>et al.</i> (https://doi.org/10.1016/j.cell.2021.12.045)
DOI: 10.6084/m9.figshare.28124483
title: FUCCI U2OS cells

description: U2OS cell cycle data, original from Mahdessian, D. et al. (https://www.nature.com/articles/s41586-021-03232-9)
DOI: 10.15468/dl.2fy2ck
title: Occurrence Download

description: A dataset containing 44648 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ennomos erosaria (Denis & Schiffermüller), 1775"
 ]
}

 The dataset includes 44648 records from 259 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055717-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kfhuwk
title: Occurrence Download

description: A dataset listing the 10 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sigesbeckia orientalis L."
 ]
}

 The dataset's 10 records were derived from 328 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055710-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2jcrh5
title: CCDC 2334997: Experimental Crystal Structure Determination

description: Related Article: Brandon A. Wright, Taku Okada, Alessio Regni, Guilian Luchini, Shree Sowndarya S. V, Nattawadee Chaisan, Sebastian Kölbl, Sojung F. Kim, Robert S. Paton, Richmond Sarpong|2024|J.Am.Chem.Soc.|146|33130|doi:10.1021/jacs.4c11252
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jcrj6
title: CCDC 2334998: Experimental Crystal Structure Determination

description: Related Article: Brandon A. Wright, Taku Okada, Alessio Regni, Guilian Luchini, Shree Sowndarya S. V, Nattawadee Chaisan, Sebastian Kölbl, Sojung F. Kim, Robert S. Paton, Richmond Sarpong|2024|J.Am.Chem.Soc.|146|33130|doi:10.1021/jacs.4c11252
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jcrk7
title: CCDC 2334999: Experimental Crystal Structure Determination

description: Related Article: Brandon A. Wright, Taku Okada, Alessio Regni, Guilian Luchini, Shree Sowndarya S. V, Nattawadee Chaisan, Sebastian Kölbl, Sojung F. Kim, Robert S. Paton, Richmond Sarpong|2024|J.Am.Chem.Soc.|146|33130|doi:10.1021/jacs.4c11252
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jcrl8
title: CCDC 2335000: Experimental Crystal Structure Determination

description: Related Article: Brandon A. Wright, Taku Okada, Alessio Regni, Guilian Luchini, Shree Sowndarya S. V, Nattawadee Chaisan, Sebastian Kölbl, Sojung F. Kim, Robert S. Paton, Richmond Sarpong|2024|J.Am.Chem.Soc.|146|33130|doi:10.1021/jacs.4c11252
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jscqf
title: CCDC 2347125: Experimental Crystal Structure Determination

description: Related Article: Yu-Cong Chen, Qiong Yu, Ning Liu, Tao Li, Wenbin Yi|2024|J.Org.Chem.|89|17475|doi:10.1021/acs.joc.4c02212
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jx9f6
title: CCDC 2350898: Experimental Crystal Structure Determination

description: Related Article: Jan Rick Koch, Mattis Damrath, Pim Puylaert, Boris J. Nachtsheim|2024|Chem.Commun.|60|14653|doi:10.1039/D4CC04934A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jx9g7
title: CCDC 2350899: Experimental Crystal Structure Determination

description: Related Article: Jan Rick Koch, Mattis Damrath, Pim Puylaert, Boris J. Nachtsheim|2024|Chem.Commun.|60|14653|doi:10.1039/D4CC04934A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jxygw
title: CCDC 2351519: Experimental Crystal Structure Determination

description: Related Article: Soumik Karmakar, Suman Patra, Ritapravo Halder, Suchismita Karmakar, Amit Majumdar|2024|Inorg.Chem.|63|23202|doi:10.1021/acs.inorgchem.4c03555
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jxyhx
title: CCDC 2351520: Experimental Crystal Structure Determination

description: Related Article: Soumik Karmakar, Suman Patra, Ritapravo Halder, Suchismita Karmakar, Amit Majumdar|2024|Inorg.Chem.|63|23202|doi:10.1021/acs.inorgchem.4c03555
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jxyjy
title: CCDC 2351521: Experimental Crystal Structure Determination

description: Related Article: Soumik Karmakar, Suman Patra, Ritapravo Halder, Suchismita Karmakar, Amit Majumdar|2024|Inorg.Chem.|63|23202|doi:10.1021/acs.inorgchem.4c03555
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jxykz
title: CCDC 2351522: Experimental Crystal Structure Determination

description: Related Article: Soumik Karmakar, Suman Patra, Ritapravo Halder, Suchismita Karmakar, Amit Majumdar|2024|Inorg.Chem.|63|23202|doi:10.1021/acs.inorgchem.4c03555
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jxyl0
title: CCDC 2351523: Experimental Crystal Structure Determination

description: Related Article: Soumik Karmakar, Suman Patra, Ritapravo Halder, Suchismita Karmakar, Amit Majumdar|2024|Inorg.Chem.|63|23202|doi:10.1021/acs.inorgchem.4c03555
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jxym1
title: CCDC 2351524: Experimental Crystal Structure Determination

description: Related Article: Soumik Karmakar, Suman Patra, Ritapravo Halder, Suchismita Karmakar, Amit Majumdar|2024|Inorg.Chem.|63|23202|doi:10.1021/acs.inorgchem.4c03555
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jxyn2
title: CCDC 2351525: Experimental Crystal Structure Determination

description: Related Article: Soumik Karmakar, Suman Patra, Ritapravo Halder, Suchismita Karmakar, Amit Majumdar|2024|Inorg.Chem.|63|23202|doi:10.1021/acs.inorgchem.4c03555
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kccr2
title: CCDC 2364424: Experimental Crystal Structure Determination

description: Related Article: Soumik Karmakar, Suman Patra, Ritapravo Halder, Suchismita Karmakar, Amit Majumdar|2024|Inorg.Chem.|63|23202|doi:10.1021/acs.inorgchem.4c03555
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kfhh0
title: CCDC 2366462: Experimental Crystal Structure Determination

description: Related Article: Soumik Karmakar, Suman Patra, Ritapravo Halder, Suchismita Karmakar, Amit Majumdar|2024|Inorg.Chem.|63|23202|doi:10.1021/acs.inorgchem.4c03555
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2khgfz
title: CCDC 2368351: Experimental Crystal Structure Determination

description: Related Article: Soumik Karmakar, Suman Patra, Ritapravo Halder, Suchismita Karmakar, Amit Majumdar|2024|Inorg.Chem.|63|23202|doi:10.1021/acs.inorgchem.4c03555
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kpr78
title: CCDC 2374390: Experimental Crystal Structure Determination

description: Related Article: Xiaoran Feng, Zhaobo Liu, Qing-Yun Ni, Bing Wang, Michael J. Ingleson, Kang Yuan|2024|Org.Lett.|26|10339|doi:10.1021/acs.orglett.4c03952
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kpvpt
title: CCDC 2374497: Experimental Crystal Structure Determination

description: Related Article: Soumik Karmakar, Suman Patra, Ritapravo Halder, Suchismita Karmakar, Amit Majumdar|2024|Inorg.Chem.|63|23202|doi:10.1021/acs.inorgchem.4c03555
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kw9b3
title: CCDC 2379725: Experimental Crystal Structure Determination

description: Related Article: Irina A. Shentseva, Andrey N. Usoltsev, Nikita A. Korobeynikov, Maxim N. Sokolov, Sergey A. Adonin|2024|CrystEngComm|26|6823|doi:10.1039/D4CE01083C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34622/datarepositorium/pki8hr
title: Data on Political, Socioeconomic and Municipal Transparency of Portuguese Municipalities

description: Secondary data covered the entire population of Portuguese municipalities on the transparency index from 2013 to 2016 and electoral effects
DOI: 10.6084/m9.figshare.28130300.v1
title: Geastrum

description: Geastrum
DOI: 10.6084/m9.figshare.28130300
title: Geastrum

description: Geastrum
DOI: 10.5281/zenodo.14007171
title: Trace metals (Cd, Cu, Pb and Zn) concentrations in tissues of Pipistrellus kuhlii lepidus with identified age from unpolluted area - Karlovka village NE Ukraine

description: The dataset contains information on level of cadmium (Cd), copper (Cu), lead (Pd) and zinc (Zn) in internal and external tissues of Pipistrellus kuhlii lepidus from agricultural area (Karlovka village). Bats were taken for analysis from Ukrainian Bat Rehabilitation Centre (Kharkiv, Ukraine) in 2021-2022. In addition, age of each individual was identified using osteochronological technique.
DOI: 10.5281/zenodo.14007172
title: Trace metals (Cd, Cu, Pb and Zn) concentrations in tissues of Pipistrellus kuhlii lepidus with identified age from unpolluted area - Karlovka village NE Ukraine

description: The dataset contains information on level of cadmium (Cd), copper (Cu), lead (Pd) and zinc (Zn) in internal and external tissues of Pipistrellus kuhlii lepidus from agricultural area (Karlovka village). Bats were taken for analysis from Ukrainian Bat Rehabilitation Centre (Kharkiv, Ukraine) in 2021-2022. In addition, age of each individual was identified using osteochronological technique.
DOI: 10.5281/zenodo.10510879
title: PCOSGen-test dataset

description: The aim of the Auto-PCOS classification challenge is to provide an opportunity for the development, testing and evaluation of Artificial Intelligence (AI) models for automatic PCOS classification of healthy and un-healthy frames extracted from ultrasound videos. This challenge encompasses diverse training and test datasets, fostering the creation of vendor-agnostic, interpretable, and broadly applicable AI models. The PCOSGen dataset is first of its kind, consists of different training and test datasets which have been collected from multiple internet resources like YouTube, ultrasoundcases.info, and Kaggle. PCOSGen-test consists of 1468 healthy and un-healthy instances. The class labels for the testing dataset are not mentioned.

Participants must follow the guidelines mentioned on the  website.
DOI: 10.5281/zenodo.10960327
title: PCOSGen-test dataset

description: The aim of the Auto-PCOS classification challenge is to provide an opportunity for the development, testing and evaluation of Artificial Intelligence (AI) models for automatic PCOS classification of healthy and un-healthy frames extracted from ultrasound videos. This challenge encompasses diverse training and test datasets, fostering the creation of vendor-agnostic, interpretable, and broadly applicable AI models. The PCOSGen dataset is first of its kind, consists of different training and test datasets which have been collected from multiple internet resources like YouTube, ultrasoundcases.info, and Kaggle. PCOSGen-test consists of 1468 healthy and un-healthy instances. The class labels for the testing dataset are not mentioned.

Participants must follow the guidelines mentioned on the  website. 

The Auto-PCOS Classification Challenge is over! Results announced!

UPDATE: The test labels have been released! 1 represents healthy. 0 represents un-healthy. 

For more details: Check 68d601deaac6055bc25b2816fb0b2d39.pdf (d197for5662m48.cloudfront.net) 

@article{hubauto,
  title={Auto-PCOS Classification Challenge},
  author={Hub, Misa and Handa, Palak and Saini, Anushka and Dutta, Siddhant and Pathak, Harsh and Choudhary, Nishi and Goel, Nidhi and Dhanao, Jasdeep Kaur}
}
DOI: 10.5281/zenodo.10510878
title: PCOSGen-test dataset

description: The PCOSGen-test dataset contains 1,468 ultrasound images, each labeled with two types of classifications:



General Classification: Indicates whether the ultrasound image appears normal or abnormal in a general context.

Specific Classification: For images classified as abnormal, specifies whether the ultrasound image shows evidence/ visibility of a polycystic ovary or not. 


This dataset was used in the Auto-PCOS classification challenge. Researchers are requested to utilize the updated dataset only. Please do not download the previous versions of this dataset.