cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/sckpzxsrht
title: Silicon Carbide's Influence on A356 Aluminum Alloy Composites: Mechanical, Thermal, Corrosion, and Microstructural Properties

description: This dataset supports research on the effects of silicon carbide (SiC) reinforcement on A356 aluminum alloy composites, focusing on mechanical, thermal, corrosion, and microstructural properties. It includes experimental data, tables, figures, and analysis on how SiC content influences tensile strength, yield strength, elastic modulus, thermal conductivity, and corrosion resistance. The dataset provides valuable insights for aerospace, automotive, and medical industries where high strength, stability, and corrosion resistance are critical.
DOI: 10.6084/m9.figshare.16304982.v2
title: Measles epidemiology paper data -.dta

description: This dataset contains data used to produce relevant results of a measles paper
DOI: 10.17632/94pxtywr6x
title: Multispectral images, IoT data to estimate foliar nitrogen in Pineapple crops

description: This repository hosts a portion of the data used in the article titled "Machine Learning for the estimation of foliar nitrogen content in pineapple crops using multispectral images and Internet of Things (IoT) platforms." Within this repository, the following elements pertain to the initial sampling date of June 30, 2022:

Multispectral Images: Images captured on this date, organized by Blocks and treatments.
Ecological Factors Data: Information detailing ecological factors recorded on this date.
Vegetation Index Statistics Data Set: A dataset encompassing statistical measures of vegetation indices.
Python Notebook: A Python Notebook file containing codes and explanations utilized for radiometric calibration, image alignment, vegetation index computation, and the requisite data for Machine Learning model implementation, inclusive of the corresponding results.
These resources constitute an integral part of the research, facilitating access to valuable data and information employed in the study. It should be noted that the information presented here is exclusively intended for academic purposes and should not be employed for any other purpose.
DOI: 10.6084/m9.figshare.12967106.v1
title: Data for SAMICU

description: Dataset of the paper Assessment of mobilization capacity in 10 different ICU scenarios by different professions
DOI: 10.6084/m9.figshare.20448339.v2
title: <b>High-quality haplotype-resolved genome assembly for ring-cup oak</b><b><i> </i></b><b>(</b><b><i>Quercus glauca</i></b><b>) provides insight into oaks demographic dynamics</b>

description: <i>Quercus</i> section <i>Cyclobalanopsis</i> represents a dominant woody lineage in East Asian evergreen broadleaved forests. Regardless of its ecological and economic importance, little is known about the genomes of species in this unique oak lineage. <i>Quercus glauca </i>is one of the most widespread tree species in the section <i>Cyclobalanopsis</i>. In this study, a high-quality haplotype-resolved reference genome was assembled for <i>Q. glauca</i> from PacBio HiFi and Hi-C reads. The genome size, contig N50, and scaffold N50 measured 902.88 Mb, 7.60 Mb, and 69.28 Mb, respectively, for haplotype1, and 913.28 Mb, 7.20 Mb, and 71.53 Mb, respectively, for haplotype2. The LTR Assembly Index of the <i>Q. glauca</i> genome was greater than 22. A total of 37,457 and 38,311 protein-coding genes were predicted in haplotype1 and haplotype2, respectively.
DOI: 10.6084/m9.figshare.28746467.v2
title: data availability

description: All raw data of toxicitybiodegradabilityhuman keratinocyte cytotoxic assayquestionnaires
DOI: 10.6084/m9.figshare.12646238.v5
title: The processed data files of T cell of 40 human samples

description: The raw counts of four featrues including gene expression by HTSeq, isoform expression by RSEM, splicing junction by STAR, and ExonOnly by HTSeq using the Gencode version 19 annotation. And the other files include the value of highly variable genes from ExonOnly after rlog transformation and batch correction by ComBat using STAR alignment and HISAT2 alignment; the genotyping, DNA methylation and two histone markers.<br>
DOI: 10.6084/m9.figshare.21528801.v2
title: Western_Antarctic_Peninsula_humpback_whale_body_condition_data.csv

description: Dataset used in analysis from: <br> Bierlich KC, Hewitt J, Schick R, Pallin L, Dale J, Friedlaender A, Christiansen F, Sprogis KR, Dawn AH, Bird CN, Larsen GD, Nichols R, Shero MR, Goldbogen J, Read AJ and Johnston DW (2022) Seasonal gain in body condition of foraging humpback whales along the Western Antarctic Peninsula. Front. Mar. Sci. 9:1036860. doi: 10.3389/fmars.2022.1036860 <br> Since the output of the uncertainty model is a posterior distribution for each measurement, we summarize each measurement using the mean of the posterior distribution and describe the uncertainty as the variance and 95% highest posterior density (HPD) intervals. So, for total length (TL), use TL.mean as the equivalent of a point estimate for TL. Use TL.var for the variance, and TL.lower and TL.upper for the lower and upper HPD interval, respectively. TL.cv is the coefficient of variation (CV%) of the posterior distribution. Same goes for body condition, which we measure as body area index (BAI). <br> Explanation of some other headers: class = reproductive clas pregnant = pregnancy status from biopsy sample analysis of progesterone mom_calf = indicates if individual is a "mom" or a "calf" mom_calf_pair = indicates the mom and calf pair number datetime = date w/ GMT time season = austral spring to fall; Season 1 (2016-2017), Season 2 (2017-2018), Season 3 (2018-2019) seasonal_duration = the number of days since the "start" of the season, which we set as Nov. 1 Lab = Duke University Marine Robotics and Remote Sensing (MaRRS) Lab or Fredrik Christiansen (FC) Aircraft = type of drone Flight = the flight ID Focal_Length = focal length (mm) of the camera Sw = sensor width of camera (mm) Iw = image width of camera (px)
DOI: 10.6084/m9.figshare.21988556.v2
title: Niger Delta Seismic Sections from VSA

description: Various items are included here. Firstly, the five Niger Delta seismic sections derived from the VERNG-99 3D survey, which was made publicly available at the Virtual Seismic Atlas (VSA), now offline. Secondly, the compilation of seismic lines from the same survey made by Estelle Mortimer and Rob Butler. Finally, the technical sheet of the VERNG-99 3D survey.
DOI: 10.6084/m9.figshare.22276720.v3
title: Different ecosystems bacterial ASV data

description: 1379 soil samples (390 agricultural fields, 337 forests, 347grasslands, and 305 wetlands) across China .
DOI: 10.6084/m9.figshare.22729517.v1
title: Internalized stigma among people living with HIV in Thailand

description: Dataset of a cross-sectional study on internalized stigma among people living with HIV in Thailand, 2021
DOI: 10.6084/m9.figshare.4246982.v1
title: Test-retest reliability of scotopic full-field electroretinograms in rabbits

description: Scotopic ERG values (a-wave (N1) and b-wave (P1) amplitudes and peak times across a wide range of stimulus strengths in New Zealand White rabbits.“ allDataTestRetest.xlsx” contains the data, the other files are R scripts to load and generate the various analysis findings and figures.
DOI: 10.15468/dl.r57tw7
title: Occurrence Download

description: A dataset containing 5342 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ipomoea aquatica Forssk.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 5342 records from 210 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013221-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/6wrtv5fgmf
title: Structured Versus Unstructured Questions for Formative Assessment in Physiology: A comparative study among Phase 1 MBBS students.

description: Medical education has opened up to accept many changing concepts in the field of education. Physiology question papers in our university so far have been open ended and not structured ones. Answers for open-ended questions are also a subject to bias during evaluation. This also has a greatly influenced their study pattern and also their performance in the exams. Objectives: 1.To assess of performance of Phase 1 MBBS students with structured questions to conventional questions in formative assessment. 2. To compare perception of Phase 1 MBBS students towards structured questions versus conventional questions in formative assessment. Methodology: Six formative assessments were done on Phase 1 MBBS students. Only those students present on the day of exam were considered. They were divided into 2 groups, one group received structured questions and the other received unstructured questions for the assessments. Each of the assessment was of one hour duration and carried 40 marks. Perception was taken at the end for both the formats of assessments. Results: The performance is compared by Independent t test. Overall mean marks scored by students with structured questions is 14.29 ±5.57 and with unstructured questions is 14.643 ±6.07. Similar performance is seen in all the six assessments and there is no significant difference in the marks scored by the students. A significant number of the student disagreed that structured questions helped score better. Conclusion: This study shows that there is no difference in performance of students with respect to structured or unstructured questions for formative assessment. Keywords: Structured questions, unstructured questions, formative assessment.
DOI: 10.17632/dbwpk8m46t
title: AMIKOM-Profiling-DISC Keywords

description: We built a vocabulary of keywords corresponded to Dominance, Influence, Stability and Conscientious (DISC) framework of personalities in Indonesian language (Bahasa). We collected the seed keywords directly from DISC guideline, and added first also second synonyms to the collection using Kateglo API (Indonesian Thesaurus). It was built with help from psychology experts as the assessment needed to be done carefully.
DOI: 10.6084/m9.figshare.11515263.v1
title: dataset_EOL.mat

description: This is a subset of training sample, and this subset contains 60,000 training samples and 10,000 test samples. The training sample set is generated based on the images of the ILSVRC2012 validation image set, which contains a total of 50,000 high-quality natural images. For each image (converted into grayscale space at first), Gaussian filtering is used to obtain five versions with different blurred levels. In this paper, the size of the Gaussian filter used is 7*7, and the standard deviation is 2. The source image and the corresponding five blurred versions are given a corresponding image label 6, 5, 4, 3, 2, 1 respectively. When the label value of the first image is greater than the second image, the label values of these sample data are set to 1. Conversely, when the label value of the first image is smaller than the second image, the label values of these sample data are set to 0. For source images and five different blurred versions, the windows with a size of 16 * 16 are randomly select from these images as the sample data. <b></b>
DOI: 10.6084/m9.figshare.16832560.v9
title: Data for "Fluid-driven transport of round sediment particles: from discrete simulations to continuum modeling"

description: data/: Data from DEM-LBM simulations of round sediment particles and continuum models -single_sphere: single sphere tests of DEM-LBM for validation -flume: DEM-LBM flume tests, compared with the corresponding experiments -wide_wall_free: DEM-LBM simulations, wide wall free cases -continuum: continuum modeling results -fluid_bc: pure fluid LBM tests to validate the boundary condition for the flume tests <br> make_figures/: The figures can be generated using the Matlab files <br> Code/: The programs used to get the DEM-LBM results and continuum modeling results are available <br>
DOI: 10.6084/m9.figshare.23733327.v1
title: <strong>A database of Global Yachts and Sailboat</strong>

description: database of yachts and saiboats.
DOI: 10.6084/m9.figshare.24166641.v1
title: Statement coverage raw files in Defects4J

description: Statement coverage raw files in Defects4J.
DOI: 10.6084/m9.figshare.24901878.v2
title: <b>Dataset of 130 metagenome-assembled genomes of healthy and diseased broiler chicken caeca from Pakistan</b>

description: This article presents metagenomic-assembled genomes (MAGs) of prokaryotic organisms originating from chicken caeca. The samples originate from broiler chickens, one group was infected with Newcastle Disease Virus (NDV) and one uninfected control group. There were four birds per group. Both groups were raised on commercially available antibiotic free feed under a semi-controlled setup. The binning step of the samples identified 130 MAGs with50% completion, and10% contamination. The data presented includes sequences in FASTA format, tables of functional annotation of genes, and data from two different approaches for phylogenetic tree construction using these MAGs. Major geochemical cycles at community level including carbon, sulfur, and nitrogen cycles are also presented.
DOI: 10.6084/m9.figshare.c.3783452_d5.v1
title: Additional file 5: Table S2. of Functional regression method for whole genome eQTL epistasis analysis with sequencing data

description: The value of risk parameter in different interaction models. (XLS 30Â kb)
DOI: 10.17632/t7cj26kzxf
title: Chemoprevention of cutaneous squamous cell carcinoma and its precursors in solid organ transplant recipients using topical sirolimus: a randomized, double-blind, placebo-controlled pilot trial - Supplementary materials

description: The files below contain the supplemental methods outlining ethics statement, study design & intervention, outcome measures, and statistical analysis. The results for recruitment, compliance, and rention as well as the safety of topical sirolimus in solid organ transplant patients (SOTRs) are also included.

Immunosuppression in solid organ transplant recipients (SOTR) greatly increases the risk of keratinocyte cancer (KC), indisputably a significant burden in terms of morbidity, mortality and cost. Switching calcineurin inhibitors to sirolimus is a major strategy that has resulted in a two-fold reduction in the risk of SCC, but is poorly tolerated with many serious adverse events 1, 2. 
To circumvent these, we explored whether topical sirolimus applied topically could safely reduce the incidence of KC in the field of cancerisation in a randomized, double-blind, placebo-controlled, single-arm trial whereby patients received intervention on the dorsum of one hand and forearm and placebo on the dorsum of the contralateral hand and forearm chosen randomly. 
At 12 weeks, the number of keratotic lesions was reduced in each patient by 31+/-5% (from an average of 9.7 to 7.9, p=0.0001) in the treated side whereas it increased marginally on the vehicle side (6+/-6%, p=0.0006).
DOI: 10.6084/m9.figshare.1126400.v2
title: Analysis of disease mention annotation with mechanical turk

description: This file contains analaysis done of disease mention annotations created by Amazon Mechanical Turk workers.
DOI: 10.6084/m9.figshare.14672232.v1
title: ts2019

description: GWAS summary statistics from the Psychiatric Genomics Consortium (PGC)
DOI: 10.6084/m9.figshare.28731785.v1
title: Survey Form - Google Forms

description: This is the survey form used in the study titled <i>'Exploring Mathematics Teachers' Experiences, Attitudes, and Perceived Competence in Implementing Lesson Study</i>
DOI: 10.6084/m9.figshare.963397.v5
title: Comparison of generic force fields for packing of concave molecules

description: Organic molecules of intrinsic microporosity (OMIMs) are a new class of highly concave molecules, designed to pack inefficiently and create microporous materials. In this work, OMIM-1 was described with full atomistic models using Dreiding, optimised potentials for liquid simulations (OPLS) and Universal force fields to recognise the features enhanced by each force field and assess their ability in representing the structural properties of this new class of materials. In addition, argon adsorption isotherms were modelled to determine the features observed in the isotherm generated by each force field, for future comparison with experimental data.
DOI: 10.17632/s4g76zd5ys
title: Image-based Data on Strain Fields of Microstructures with Porosity Defects_1

description: This dataset is one of the three datasets that are utilized in the research, 'Predicting elastic strain fields in defective microstructures using image colorization algorithms' submitted for publication in the Computational Material Science Journal. This is a part of supplementary data for the Data in Brief article co-submitted alongside the aforementioned paper in Computational Material Science Journal. The data file is a MATLAB Binary Data Compressed file (.mat) that contains images of microstructures and their respective strain fields represented as two-dimensional arrays. This data is utilized for training a convolutional neural network to predict strain fields within a microstructure, through image colorization algorithm. This data contains image data of 1000 samples of microstructures with 100 circular porosity defects having their radii uniformly distributed in the range 0.1 – 0.5 mm, and their corresponding strain fields.
DOI: 10.25422/azu.data.25483636.v1
title: Apollo 15 Low-Titanium Basalt Data

description: Authored by Zoë E. Wilbur, Jessica J. Barnes, Scott A. Eckley, Timmons Erickson, Kenneth Domanik, and Ryan A. Zeigler"Elemental Maps" Folder: Elemental maps obtained using a scanning electron microscope or electron microprobe, as described in the methods of the associated manuscript. Includes maps for the following polished thin sections: 15495, 16; 15495, 19; 15499, 125; 15499, 127; 15555, 403; 15556, 270; 15608, 6."X-Ray Computed Tomography Scans" Folder: Contains 3D XCT scans for low-Ti Apollo 15 basalt chips. Each zipped folder contains tiff images of the scanned sample and the corresponding "contents" Word file for scan parameters."Apollo 15 Low Ti Basalt EMPA Compiled" Spreadsheet: Excel Spreadsheet containing all associated electron microprobe chemical spot analyses from the studied polished sections.This data supplements the following publication:Wilbur, Z. E., Barnes, J. J., Eckley, K. Domanik, S. A., Zeigler, R. A. (In Review). On the diversity of low-titanium basaltic magmatism from Apollo 15 returned samples. Geochimica et Cosmochimica Acta.Materials and Methods:-Scanning electron microscope (TM4000 Hitachi Tabletop SEM and JEOL 7600F) for elemental mapping and phase identification-Electron microprobe (Cameca SX-100) for quantitative mineral and glass chemistry-X-ray computed tomography scanner (Nikon XTH 320) for 3D data of basalts-Dragonfly (ORS, open source) software for 3D reconstructions-Blob3B (UTCT, open source) software for 3D measurements-Stereonet 11 (open source) software for fabric analysis-ImageJ/FIJI (open source) software for 2D modal mineralogic analysesCRediT authorship contribution statement:Zoë E. Wilbur: Conceptualization, Funding acquisition, Data curation, Formal analysis, Investigation, Methodology, Visualization, Writing – Original draft, Writing – Review and editing. Jessica J. Barnes: Conceptualization, Funding acquisition, Project administration, Supervision, Visualization, Writing – Review and editing, Resources. Scott A. Eckley: Investigation, Methodology, Data curation, Resources, Writing – Review and editing. Timmons Erickson: Investigation, Methodology, Data curation, Resources, Writing – Review and editing. Kenneth Domanik: Investigation, Methodology, Data curation, Resources, Writing – Review and editing. Ryan A. Zeigler: Conceptualization, Funding acquisition, Resources, Writing – Review and editing.<i>For inquiries regarding the contents of this dataset, please contact the Corresponding Author listed in the README.txt file. Administrative inquiries (e.g., removal requests, trouble downloading, etc.) can be directed to data-management@arizona.edu</i>
DOI: 10.25452/figshare.plus.22806455.v1
title: Dataset supporting Figure 3: Generalist/Specialist Analyses

description:   
<strong>Organisms exhibit extensive variation in ecological niche breadth, from very narrow (specialists) to very broad (generalists). Paradigms proposed to explain this variation either invoke trade-offs between performance efficiency and breadth or underlying intrinsic or extrinsic factors. We assembled genomic (1,154 yeast strains from 1,090 species), metabolic (quantitative measures of growth of 843 species in 24 conditions), and ecological (environmental ontology of 1,088 species) data from nearly all known species of the ancient fungal subphylum Saccharomycotina to examine niche breadth evolution. We found large interspecific differences in carbon breadth stem from intrinsic differences in genes encoding specific metabolic pathways but no evidence of trade-offs and a limited role of extrinsic ecological factors. These comprehensive data argue that intrinsic factors driving microbial niche breadth variation</strong>. 
<br>
This item includes raw and underlying data associated with Figure 3 in the manuscript. 
<br>
These items were used to assess the evolution and frequency of the generalist and specialist niche breadth in the budding yeasts.
<br>
Each item includes a README.txt file that includes specific information about the analysis, file structure, and folder structure. 
<br>

 <strong>bayes_carb_v_class_coevolution.tar.gz </strong> - Bayestraits outputs to compare gain and loss of carbon metabolism traits in generalist and specialist backgrounds. Includes data shown in Fig 3D
 <strong>bayes_carbon_nitrogen_coevolution.tar.gz</strong> - Bayestraits outputs for the analysis that modeled co-evolution between carbon and nitrogen breadth. Data discussed in the manuscript
  <strong>carbon_breadth_reconstruction.tar.gz</strong> - Bayestraits ancestral reconstruction of carbon breadth
 <strong> CarbonNitrogen_Classifications.zip </strong>- Data file containing information about carbon and nitrogen classifications
DOI: 10.6084/m9.figshare.22691095.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.25893550.v1
title: 富营养化淡水中夜间含氧甲烷生产的重大贡献

description: 抽样活动和现场实验分为以下三个部分：1） 8 月 31 日凌晨 12：00 至 9 月 1 日凌晨 12：00 在漂浮在海湾中心的甲板上进行 Diel 采样。在迪尔循环期间，每三小时采集一次用于化学分析和空气-水气体通量（CO<sub>2</sub>和 CH<sub>4</sub>。采样深度分别为水面以下0.5 m、3.0 m、6.0 m、12 m、18 m和21 m。现场部署了多参数水质探测仪（YSI<sup>®</sup> EXO2，美国），沿垂直剖面连续获取水温、溶解氧（DO）、pH值等理化参数。2）定量评价含氧CH<sub>4</sub>。现场实验包括以下三个附加途径：a）漏斗收集的海湾沿岸地区CH 4的沉积物-水和空气-水沸腾通量<sub>4</sub>积物-水扩散CH<sub>4</sub> 通过对海湾内沉积物孔隙水进行采样和分析输送估算<sub>4</sub>水柱的质量通过声学多普勒测速仪（Flow Quest，US）在浮动甲板两侧的两个采样横截面上沿垂直剖面进行采样和水流测量，即内侧（<b><i>InCx</i></b>）和外侧（<b><i>OutCx</i></b>补充图S13）<sub>4</sub>水面以下0.5 m、6 m和20 m深度进行为期4天的原位培养实验，追踪微生物代谢驱动的CH 4动力学。现场收集水样并密封在 624 mL 棕色玻璃瓶中，包裹在黑色塑料袋中，以防止在孵育过程中进行光合作用。在每个深度的现场部署了四个相同的培养瓶，以方便在24小时内进行每日取样。<sub>4</sub>浓度变化及其稳定同位素特征<i>我</i> 同位素分析仪（美国加利福尼亚州皮卡罗<sup>®</sup>。进行一式三份进行质量控制。