cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48597/kqyw-2ksj
title: Measurement of PFAS (per- and polyfluoroalkyl substances) at Zeppelin mountain (Ny-Ålesund)

description: Measurement of PFAS (per- and polyfluoroalkyl substances) at Zeppelin mountain (Ny-Ålesund)
DOI: 10.48597/ksm7-5km7
title: Measurement of Arsenic at Els Torms

description: Measurement of Arsenic at Els Torms
DOI: 10.48597/mxw7-ejrb
title: Measurement of Inorganics in air and particle phase at Pallas (Matorova)

description: Measurement of Inorganics in air and particle phase at Pallas (Matorova)
DOI: 10.48597/mzqs-3d6n
title: Measurement of Sodium at Els Torms

description: Measurement of Sodium at Els Torms
DOI: 10.48597/p25j-qn2u
title: Measurement of pH at Valentia Observatory

description: Measurement of pH at Valentia Observatory
DOI: 10.48597/p3hd-kwct
title: Measurement of PM mass at Birkenes II

description: Measurement of PM mass at Birkenes II
DOI: 10.48597/p8u4-v4ep
title: Measurement of Particle_number_concentration at Jungfraujoch

description: Measurement of Particle_number_concentration at Jungfraujoch
DOI: 10.48597/pfrv-64ct
title: Measurement of Conductivity at Johnstown Castle

description: Measurement of Conductivity at Johnstown Castle
DOI: 10.48597/pntm-ugsx
title: Measurement of Sulphate_corrected at Hurdal

description: Measurement of Sulphate_corrected at Hurdal
DOI: 10.48597/pwat-tgfe
title: Measurement of Pm25_mass at Birkenes II

description: Measurement of Pm25_mass at Birkenes II
DOI: 10.48597/qzf4-xgzf
title: Measurement of Heavy metals at Hurdal

description: Measurement of Heavy metals at Hurdal
DOI: 10.48597/raqm-zptm
title: Measurement of Sum_ammonia_and_ammonium at Hurdal

description: Measurement of Sum_ammonia_and_ammonium at Hurdal
DOI: 10.48597/rnus-wtpf
title: Measurement of Chloride at Johnstown Castle

description: Measurement of Chloride at Johnstown Castle
DOI: 10.48597/s4vs-vxtc
title: Measurement of Magnesium at Valentia Observatory

description: Measurement of Magnesium at Valentia Observatory
DOI: 10.48597/se3h-b2g6
title: Measurement of Pm10_mass at Kårvatn

description: Measurement of Pm10_mass at Kårvatn
DOI: 10.48597/snqb-tnpe
title: Measurement of Heavy metals at Svanvik

description: Measurement of Heavy metals at Svanvik
DOI: 10.48597/ssq4-hftd
title: Measurement of Ammonium at Carnsore Point

description: Measurement of Ammonium at Carnsore Point
DOI: 10.48597/sufy-ajsy
title: Measurement of Chloride at Els Torms

description: Measurement of Chloride at Els Torms
DOI: 10.48597/t65a-9mss
title: Measurement of Sulphate_corrected at Tustervatn

description: Measurement of Sulphate_corrected at Tustervatn
DOI: 10.48597/tadm-y8x4
title: Measurement of Precipitation_amount at Valentia Observatory

description: Measurement of Precipitation_amount at Valentia Observatory
DOI: 10.48597/u45f-yt5r
title: Measurement of Sulphate_corrected at Birkenes II

description: Measurement of Sulphate_corrected at Birkenes II
DOI: 10.48597/u7yw-mzs4
title: Measurement of Inorganics in precipitation at Kamenicki vis

description: Measurement of Inorganics in precipitation at Kamenicki vis
DOI: 10.48597/uc8s-9qar
title: Measurement of Potassium at Els Torms

description: Measurement of Potassium at Els Torms
DOI: 10.48597/unr6-r65y
title: Measurement of Conductivity at Tustervatn

description: Measurement of Conductivity at Tustervatn
DOI: 10.48597/up64-6w82
title: Measurement of Chromium at Els Torms

description: Measurement of Chromium at Els Torms
DOI: 10.48597/uyke-pbc7
title: Measurement of Nitrate at Johnstown Castle

description: Measurement of Nitrate at Johnstown Castle
DOI: 10.48597/v22c-g6by
title: Measurement of Nitrate at Carnsore Point

description: Measurement of Nitrate at Carnsore Point
DOI: 10.48597/v5k6-w64e
title: Measurement of Calcium at Els Torms

description: Measurement of Calcium at Els Torms
DOI: 10.48597/vk8r-g7kb
title: Measurement of Sodium at Valentia Observatory

description: Measurement of Sodium at Valentia Observatory
DOI: 10.48597/vzxv-frj9
title: Measurement of Lead at Els Torms

description: Measurement of Lead at Els Torms
DOI: 10.48597/wgrr-jcfz
title: Measurement of PBDEs (polybrominated diphenyl ethers) at Andøya

description: Measurement of PBDEs (polybrominated diphenyl ethers) at Andøya
DOI: 10.48597/why4-ts2g
title: Measurement of Heavy metals at Zeppelin mountain (Ny-Ålesund)

description: Measurement of Heavy metals at Zeppelin mountain (Ny-Ålesund)
DOI: 10.48597/wnxc-yx8f
title: Measurement of Sulphate_total at Valentia Observatory

description: Measurement of Sulphate_total at Valentia Observatory
DOI: 10.6084/m9.figshare.20438489
title: Additional file 1 of Cardiovascular outcomes trials: a paradigm shift in the current management of type 2 diabetes

description: Additional file 1: Table S1. Expanded details of CVOTs, renal and HF studies in patients with T2D. Overview of diabetes CVOTs, renal outcomes studies and HF studies with glucose-lowering drugs in patients with T2D, including key outcomes and baseline characteristics [15, 16, 18, 20–22, 26–37, 49–55, 57–59, 62, 63, 68–72, 92, 99, 125].
DOI: 10.6084/m9.figshare.20438489.v1
title: Additional file 1 of Cardiovascular outcomes trials: a paradigm shift in the current management of type 2 diabetes

description: Additional file 1: Table S1. Expanded details of CVOTs, renal and HF studies in patients with T2D. Overview of diabetes CVOTs, renal outcomes studies and HF studies with glucose-lowering drugs in patients with T2D, including key outcomes and baseline characteristics [15, 16, 18, 20–22, 26–37, 49–55, 57–59, 62, 63, 68–72, 92, 99, 125].
DOI: 10.6084/m9.figshare.17292828
title: Additional file 2 of InMut-finder: a software tool for insertion identification in mutagenesis using Nanopore long reads

description: Additional file 2: Supplemental Table S1. All insertion sites identified in one soybean Ds mutant. Supplemental Table S2. Three selected insertion sites and primer sequences for PCR validation for the soybean mutant line. Supplemental Table S3. All insertion sites identified in one Tnt1 mutant of Medicago truncatula.
DOI: 10.6084/m9.figshare.17292828.v1
title: Additional file 2 of InMut-finder: a software tool for insertion identification in mutagenesis using Nanopore long reads

description: Additional file 2: Supplemental Table S1. All insertion sites identified in one soybean Ds mutant. Supplemental Table S2. Three selected insertion sites and primer sequences for PCR validation for the soybean mutant line. Supplemental Table S3. All insertion sites identified in one Tnt1 mutant of Medicago truncatula.
DOI: 10.25378/janelia.13622819.v1
title: EASI-FISH example data (multi-round FISH, round 3)

description: Example dataset that can be used for testing the EASI-FISH (Expansion-Assisted Iterative Fluorescence in situ hybridization) data analysis pipeline (https://github.com/JaneliaSciComp/multifish). Raw image data (.czi) and metadata (.mvl) are provided here. Image data was collected using a Zeiss Lightsheet Z.1 microscope. A 20× water-immersion objective (RI=1.33) was used for imaging with 1× zoom. Single-side illumination was used to reduce light exposure and imaging time. Overlap between tiles was set to 8%. Voxel size (µm): 0.23 x 0.23 x 0.42 (x, y, z). This dataset can be used with EASI-FISH example data (multi-round FISH, round 5 https://doi.org/10.25378/janelia.13622828) for registration testing.

<br>LHA3_R3_medium (32GB): <br>Two image tiles are included in a single CZI file, with 4 channels (3 FISH channels and 1 DAPI channel). Channel1: 488 (<i>Gpr83</i>), channel 2: 669 (<i>Slc17a6</i>), channel 3: 405 (DAPI), channel 4: 546 (<i>Bdnf</i>) and image dimension per tile: 1920 x 1920 x 591 (x, y, z). <br>LHA3_R3_small (12GB): <br>Two image tiles are included in a single CZI file, with 2 channels (1 FISH channel and 1 DAPI channel). Channel1: 488 (<i>Gpr83</i>), channel 2: 405 (DAPI) and image dimension per tile: 1920 x 1920 x 422 (x, y, z). <br><br>
DOI: 10.25378/janelia.13622819.v2
title: EASI-FISH example data (multi-round FISH, round 3)

description: Example dataset that can be used for testing the EASI-FISH (Expansion-Assisted Iterative Fluorescence in situ hybridization) data analysis pipeline (https://github.com/JaneliaSciComp/multifish). Raw image data (.czi) and metadata (.mvl) are provided here. Image data was collected using a Zeiss Lightsheet Z.1 microscope. A 20× water-immersion objective (RI=1.33) was used for imaging with 1× zoom. Single-side illumination was used to reduce light exposure and imaging time. Overlap between tiles was set to 8%. Voxel size (µm): 0.23 x 0.23 x 0.42 (x, y, z). This dataset can be used with EASI-FISH example data (multi-round FISH, round 5) (https://doi.org/10.25378/janelia.13622828) for registration testing.

<br>LHA3_R3_medium (32GB): <br>Two image tiles are included in a single CZI file, with 4 channels (3 FISH channels and 1 DAPI channel). Channel1: 488 (<i>Gpr83</i>), channel 2: 669 (<i>Slc17a6</i>), channel 3: 405 (DAPI), channel 4: 546 (<i>Bdnf</i>) and image dimension per tile: 1920 x 1920 x 591 (x, y, z). <br>LHA3_R3_small (12GB): <br>Two image tiles are included in a single CZI file, with 2 channels (1 FISH channel and 1 DAPI channel). Channel1: 488 (<i>Gpr83</i>), channel 2: 405 (DAPI) and image dimension per tile: 1920 x 1920 x 422 (x, y, z). <br><br>
DOI: 10.48597/x6dr-gccj
title: Measurement of Precipitation_amount_off at Johnstown Castle

description: Measurement of Precipitation_amount_off at Johnstown Castle
DOI: 10.48597/xgrp-3fnu
title: Measurement of Sulphate_corrected at Zeppelin mountain (Ny-Ålesund)

description: Measurement of Sulphate_corrected at Zeppelin mountain (Ny-Ålesund)
DOI: 10.48597/xku7-hdds
title: Measurement of Sum_nitric_acid_and_nitrate at Zeppelin mountain (Ny-Ålesund)

description: Measurement of Sum_nitric_acid_and_nitrate at Zeppelin mountain (Ny-Ålesund)
DOI: 10.48597/yn72-sbg2
title: Measurement of Sum_nitric_acid_and_nitrate at Els Torms

description: Measurement of Sum_nitric_acid_and_nitrate at Els Torms
DOI: 10.48597/z2f6-budv
title: Measurement of Zinc at Els Torms

description: Measurement of Zinc at Els Torms
DOI: 10.48597/zg9s-kbtz
title: Measurement of Nitrate at Johnstown Castle

description: Measurement of Nitrate at Johnstown Castle
DOI: 10.48597/zx7s-kfsn
title: Measurement of Ammonium at Johnstown Castle

description: Measurement of Ammonium at Johnstown Castle
DOI: 10.48597/zxsh-urpg
title: Measurement of Pm10_mass at Birkenes II

description: Measurement of Pm10_mass at Birkenes II
DOI: 10.48597/24sy-a4em
title: Measurement of Acenaphthylene at Kosetice (NOAK)

description: Measurement of Acenaphthylene at Kosetice (NOAK)
DOI: 10.48597/3cv3-xdhe
title: Measurement of Magnesium at Svratouch

description: Measurement of Magnesium at Svratouch
DOI: 10.48597/3vww-ddjz
title: Measurement of Nitrogen oxides at Zarra

description: Measurement of Nitrogen oxides at Zarra
DOI: 10.48597/4ck7-cx58
title: Measurement of Pp_DDT at Kosetice (NOAK)

description: Measurement of Pp_DDT at Kosetice (NOAK)
DOI: 10.48597/4g3v-x7kx
title: Measurement of Phenanthrene at Kosetice (NOAK)

description: Measurement of Phenanthrene at Kosetice (NOAK)
DOI: 10.48597/55pr-yb76
title: Measurement of Nitrogen oxides at Cabo de Creus

description: Measurement of Nitrogen oxides at Cabo de Creus
DOI: 10.48597/5ch2-qwc7
title: Measurement of PCB_52 at Kosetice (NOAK)

description: Measurement of PCB_52 at Kosetice (NOAK)
DOI: 10.48597/5yqb-48ux
title: Measurement of PCB_101 at Kosetice (NOAK)

description: Measurement of PCB_101 at Kosetice (NOAK)
DOI: 10.48597/67je-c98h
title: Measurement of Nickel at Svratouch

description: Measurement of Nickel at Svratouch
DOI: 10.48597/6ghf-rywn
title: Measurement of Benzo_b_fluoranthene at Kosetice (NOAK)

description: Measurement of Benzo_b_fluoranthene at Kosetice (NOAK)
DOI: 10.48597/7d3g-h85t
title: Measurement of Alpha_HCH at Kosetice (NOAK)

description: Measurement of Alpha_HCH at Kosetice (NOAK)
DOI: 10.48597/8fpt-uexb
title: Measurement of Inden_123cd_pyrene at Kosetice (NOAK)

description: Measurement of Inden_123cd_pyrene at Kosetice (NOAK)
DOI: 10.48597/9fkw-urdy
title: Measurement of Anthracene at Kosetice (NOAK)

description: Measurement of Anthracene at Kosetice (NOAK)
DOI: 10.48597/9syr-aasb
title: Measurement of Temperature at San Pablo de los Montes

description: Measurement of Temperature at San Pablo de los Montes
DOI: 10.48597/abpd-e3bn
title: Measurement of Nitrogen oxides at Penausende

description: Measurement of Nitrogen oxides at Penausende
DOI: 10.48597/anrr-9gh2
title: Measurement of Sodium at Svratouch

description: Measurement of Sodium at Svratouch
DOI: 10.48597/by49-p88a
title: Measurement of Sulphate_total at Svratouch

description: Measurement of Sulphate_total at Svratouch
DOI: 10.48597/d346-db8c
title: Measurement of pH at Kosetice (NOAK)

description: Measurement of pH at Kosetice (NOAK)
DOI: 10.48597/dbhm-3mbj
title: Measurement of Nitrogen oxides at Doñana

description: Measurement of Nitrogen oxides at Doñana
DOI: 10.48597/dqqw-n92z
title: Measurement of Wind_speed at San Pablo de los Montes

description: Measurement of Wind_speed at San Pablo de los Montes
DOI: 10.48597/dqvj-hmaa
title: Measurement of Pressure at San Pablo de los Montes

description: Measurement of Pressure at San Pablo de los Montes
DOI: 10.48597/dwbs-mfam
title: Measurement of Pyrene at Kosetice (NOAK)

description: Measurement of Pyrene at Kosetice (NOAK)
DOI: 10.48597/dysj-xs5q
title: Measurement of Calcium at Churanov

description: Measurement of Calcium at Churanov
DOI: 10.48597/ejrp-7rje
title: Measurement of Nitrogen oxides at Campisabalos

description: Measurement of Nitrogen oxides at Campisabalos
DOI: 10.48597/ewqn-emax
title: Measurement of Ammonium at Churanov

description: Measurement of Ammonium at Churanov
DOI: 10.48597/ezzt-jejt
title: Measurement of PCB_138 at Kosetice (NOAK)

description: Measurement of PCB_138 at Kosetice (NOAK)
DOI: 10.48597/fnv8-9b7y
title: Measurement of Conductivity at Svratouch

description: Measurement of Conductivity at Svratouch
DOI: 10.48597/fstg-6ync
title: Measurement of Nitrogen oxides at Víznar

description: Measurement of Nitrogen oxides at Víznar
DOI: 10.25378/janelia.13622828
title: EASI-FISH example data (multi-round FISH, round 5)

description: Example dataset that can be used for testing the EASI-FISH (Expansion-Assisted Iterative Fluorescence in situ hybridization) data analysis pipeline (https://github.com/JaneliaSciComp/multifish). Raw image data (.czi) and metadata (.mvl) are provided here. Image data was collected using a Zeiss Lightsheet Z.1 microscope. A 20× water-immersion objective (RI=1.33) was used for imaging with 1× zoom. Single-side illumination was used to reduce light exposure and imaging time. Overlap between tiles was set to 8%. Voxel size (µm): 0.23 x 0.23 x 0.42 (x, y, z). It can be used with EASI-FISH example data (multi-round FISH, round 3) (https://doi.org/10.25378/janelia.13622819) for registration testing.

<br>LHA3_R5_medium (32GB):<br>Two image tiles are included in a single CZI file, with 4 channels (3 FISH channels and 1 DAPI channel). Channel1: 488 (<i>Gad1</i>), channel 2: 669 (<i>Col25a1</i>), channel 3: 405 (DAPI), channel 4: 546 (<i>Synpr</i>) and image dimension per tile: 1920 x 1920 x 575 (x, y, z).<br>LHA3_R5_small (11GB):<br>Two image tiles are included in a single CZI file, with 2 channels (1 FISH channel and 1 DAPI channel). Channel1: 488 (<i>Gad1</i>), channel 2: 405 (DAPI) and image dimension per tile: 1920 x 1920 x 414 (x, y, z).<br>LHA3_R5_tiny (&lt;1GB):<br>Two image tiles are included in two separate CZI files (LHA3_R5_tiny_V01.czi and LHA3_R5_tiny_V02.czi), with 2 channels (1 FISH channel and 1 DAPI channel). Channel1: 488 (<i>Gad1</i>), channel 2: 405 (DAPI). Please note that this set is for software testing only and the output from this set may not reflect the actual performance of the pipeline, which is optimized for large datasets.
DOI: 10.25378/janelia.13622828.v1
title: EASI-FISH example data (multi-round FISH, round 5)

description: Example dataset that can be used for testing the EASI-FISH (Expansion-Assisted Iterative Fluorescence in situ hybridization) data analysis pipeline (https://github.com/JaneliaSciComp/multifish). Raw image data (.czi) and metadata (.mvl) are provided here. Image data was collected using a Zeiss Lightsheet Z.1 microscope. A 20× water-immersion objective (RI=1.33) was used for imaging with 1× zoom. Single-side illumination was used to reduce light exposure and imaging time. Overlap between tiles was set to 8%. Voxel size (µm): 0.23 x 0.23 x 0.42 (x, y, z). It can be used with EASI-FISH example data (multi-round FISH, round 3 https://doi.org/10.25378/janelia.13622819) for registration testing.

<br>LHA3_R5_medium (32GB):<br>Two image tiles are included in a single CZI file, with 4 channels (3 FISH channels and 1 DAPI channel). Channel1: 488 (<i>Gad1</i>), channel 2: 669 (<i>Col25a1</i>), channel 3: 405 (DAPI), channel 4: 546 (<i>Synpr</i>) and image dimension per tile: 1920 x 1920 x 575 (x, y, z).<br>LHA3_R5_small (11GB):<br>Two image tiles are included in a single CZI file, with 2 channels (1 FISH channel and 1 DAPI channel). Channel1: 488 (<i>Gad1</i>), channel 2: 405 (DAPI) and image dimension per tile: 1920 x 1920 x 414 (x, y, z).
DOI: 10.25378/janelia.13622828.v3
title: EASI-FISH example data (multi-round FISH, round 5)

description: Example dataset that can be used for testing the EASI-FISH (Expansion-Assisted Iterative Fluorescence in situ hybridization) data analysis pipeline (https://github.com/JaneliaSciComp/multifish). Raw image data (.czi) and metadata (.mvl) are provided here. Image data was collected using a Zeiss Lightsheet Z.1 microscope. A 20× water-immersion objective (RI=1.33) was used for imaging with 1× zoom. Single-side illumination was used to reduce light exposure and imaging time. Overlap between tiles was set to 8%. Voxel size (µm): 0.23 x 0.23 x 0.42 (x, y, z). It can be used with EASI-FISH example data (multi-round FISH, round 3) (https://doi.org/10.25378/janelia.13622819) for registration testing.

<br>LHA3_R5_medium (32GB):<br>Two image tiles are included in a single CZI file, with 4 channels (3 FISH channels and 1 DAPI channel). Channel1: 488 (<i>Gad1</i>), channel 2: 669 (<i>Col25a1</i>), channel 3: 405 (DAPI), channel 4: 546 (<i>Synpr</i>) and image dimension per tile: 1920 x 1920 x 575 (x, y, z).<br>LHA3_R5_small (11GB):<br>Two image tiles are included in a single CZI file, with 2 channels (1 FISH channel and 1 DAPI channel). Channel1: 488 (<i>Gad1</i>), channel 2: 405 (DAPI) and image dimension per tile: 1920 x 1920 x 414 (x, y, z).<br>LHA3_R5_tiny (&lt;1GB):<br>Two image tiles are included in two separate CZI files (LHA3_R5_tiny_V01.czi and LHA3_R5_tiny_V02.czi), with 2 channels (1 FISH channel and 1 DAPI channel). Channel1: 488 (<i>Gad1</i>), channel 2: 405 (DAPI). Please note that this set is for software testing only and the output from this set may not reflect the actual performance of the pipeline, which is optimized for large datasets.
DOI: 10.48597/gnsp-wbe5
title: Measurement of Cadmium at Churanov

description: Measurement of Cadmium at Churanov
DOI: 10.48597/guhu-trnb
title: Measurement of pH at Svratouch

description: Measurement of pH at Svratouch
DOI: 10.25378/janelia.13622819
title: EASI-FISH example data (multi-round FISH, round 3)

description: Example dataset that can be used for testing the EASI-FISH (Expansion-Assisted Iterative Fluorescence in situ hybridization) data analysis pipeline (https://github.com/JaneliaSciComp/multifish). Raw image data (.czi) and metadata (.mvl) are provided here. Image data was collected using a Zeiss Lightsheet Z.1 microscope. A 20× water-immersion objective (RI=1.33) was used for imaging with 1× zoom. Single-side illumination was used to reduce light exposure and imaging time. Overlap between tiles was set to 8%. Voxel size (µm): 0.23 x 0.23 x 0.42 (x, y, z). This dataset can be used with EASI-FISH example data (multi-round FISH, round 5) (https://doi.org/10.25378/janelia.13622828) for registration testing.

<br>LHA3_R3_medium (32GB): <br>Two image tiles are included in a single CZI file, with 4 channels (3 FISH channels and 1 DAPI channel). Channel1: 488 (<i>Gpr83</i>), channel 2: 669 (<i>Slc17a6</i>), channel 3: 405 (DAPI), channel 4: 546 (<i>Bdnf</i>) and image dimension per tile: 1920 x 1920 x 591 (x, y, z). <br>LHA3_R3_small (12GB): <br>Two image tiles are included in a single CZI file, with 2 channels (1 FISH channel and 1 DAPI channel). Channel1: 488 (<i>Gpr83</i>), channel 2: 405 (DAPI) and image dimension per tile: 1920 x 1920 x 422 (x, y, z). <br><br>LHA3_R3_tiny (&lt;1GB):<br>Two image tiles are included in two separate CZI files (LHA3_R3_tiny_V01.czi and LHA3_R3_tiny_V02.czi), with 2 channels (1 FISH channel and 1 DAPI channel). Channel1: 488 (<i>Gpr83</i>), channel 2: 405 (DAPI). Please note that this set is for software testing only and the output from this set may not reflect the actual performance of the pipeline, which is optimized for large datasets. <br>
DOI: 10.25378/janelia.13622828.v2
title: EASI-FISH example data (multi-round FISH, round 5)

description: Example dataset that can be used for testing the EASI-FISH (Expansion-Assisted Iterative Fluorescence in situ hybridization) data analysis pipeline (https://github.com/JaneliaSciComp/multifish). Raw image data (.czi) and metadata (.mvl) are provided here. Image data was collected using a Zeiss Lightsheet Z.1 microscope. A 20× water-immersion objective (RI=1.33) was used for imaging with 1× zoom. Single-side illumination was used to reduce light exposure and imaging time. Overlap between tiles was set to 8%. Voxel size (µm): 0.23 x 0.23 x 0.42 (x, y, z). It can be used with EASI-FISH example data (multi-round FISH, round 3) (https://doi.org/10.25378/janelia.13622819) for registration testing.

<br>LHA3_R5_medium (32GB):<br>Two image tiles are included in a single CZI file, with 4 channels (3 FISH channels and 1 DAPI channel). Channel1: 488 (<i>Gad1</i>), channel 2: 669 (<i>Col25a1</i>), channel 3: 405 (DAPI), channel 4: 546 (<i>Synpr</i>) and image dimension per tile: 1920 x 1920 x 575 (x, y, z).<br>LHA3_R5_small (11GB):<br>Two image tiles are included in a single CZI file, with 2 channels (1 FISH channel and 1 DAPI channel). Channel1: 488 (<i>Gad1</i>), channel 2: 405 (DAPI) and image dimension per tile: 1920 x 1920 x 414 (x, y, z).
DOI: 10.25378/janelia.13749154
title: EASI-FISH enabled spatial analysis of molecular cell types in the lateral hypothalamus

description: Expansion-Assisted Iterative Fluorescence in situ hybridization (EASI-FISH) allows spatial analysis of molecular cell types in thick tissue volumes (300µm). We applied EASI-FISH to the mouse lateral hypothalamus (LHA), a brain region that has been studied for decades as an important motivational center regulating ingestive, social, arousal, and autonomic functions. Despite extensive functional investigation, the understanding of the LHA is limited by poor anatomical definition. Here, we performed EASI-FISH using 24 molecular cell type markers identified from scRNA-Seq and uncovered an unexpected parcellation of the LHA not previously described from cell density measurements. It also reveals morphological diversity of neuronal types in this region. 'EASI_FISH_gene_count.csv' contains spot count per cell for all marker genes probed. Marker genes, <i>Meis2</i> and <i>Th </i>were probed twice (R1 and R9) to evaluate the RNA stability of the samples. Columns are marker genes and rows are neuron IDs. Data collected from three animals (LHA1, LHA2 and LHA3).<br><br>'EASI_FISH_metadata.csv' contains metadata for each neuron. Rows are neuron IDs and columns are metadata, including neuronal position (z, y, x, after rigid alignment), soma volume (area), soma shape (eccentricity and solidity), molecular cell type it belongs to (cell type), etc. All measurements presented here in pre-expansion units.
DOI: 10.48597/gyqw-5jem
title: Measurement of Benzo_k_fluoranthene at Kosetice (NOAK)

description: Measurement of Benzo_k_fluoranthene at Kosetice (NOAK)
DOI: 10.48597/hdb2-78p9
title: Measurement of Lead at Churanov

description: Measurement of Lead at Churanov