cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/xng6jt7658
title: Replication Data for Determinants of Institutional Health Facility Delivery among Mothers Attending Immunization Services in Busia District

description: Only primary data collected from the respondents was used; collected by the use of Focus Group Semi-structured questionnaires and Discussion (FGD) guides. Structured interviewer-administered questionnaires were used by the researchers to record individual responses from the mothers. Two Focus group discussions were held with mothers, with numbers ranging from 8-12 members per group. Age categories of mothers were taken care of to constitute each group. With the help of the guide, the researcher asked the appropriate questions and recorded as well as taped the audio voices of respondents.
DOI: 10.17632/krmdxh74z6
title: Dataset#1 Bone pathologies of modern non-working cattle (Bos taurus) in the context of grazing systems and environmental influences (based on materials from the South Urals, Russia)

description: Dataset#1 contains a list of all detected pathologies on the bones of modern cattle, as well as measurements of bones with pathologies. Dataset#1 is a part of the article ""Bone pathologies of modern non-working cattle (Bos taurus) in the context of grazing systems and environmental influences (based on materials from the South Urals, Russia)"" Abstract. The aim of the work is to assess the forms and boundaries of development of age-related changes and bone pathologies in modern non-working cattle for the possibility of using the results in the analysis of archaezooological collections and in the reconstruction of the working cattle exploitation in antiquity. Study area is located in the steppe zone of the Southern Urals on the territory of Russia near the border with Kazakhstan. About 300 bones of modern cattle were analyzed, most of which are represented by metapodials and phalanxes. When analyzing the material, various archaezoological methods were used to reconstruct the size of animals and describe pathologies. The main results of the work are evidence that minor lipping and exostoses of metapodials and phalanxes, as well as ankylosis and hip joint eburnation, are typical for non-working cattle. In rare cases, lipping and exostoses of 3-4 stages are observed. Another important result is the discovery of the relationship between osteophagia and pathologies of the dentition of cattle. The analyzed changes in the bones of the distal extremities cannot be used for categorical reconstruction of the working cattle when processing the archaezooological materials from archaeological sites, primarily in the East European steppe space. The study showed the vulnerability of reconstructing the working cattle exploitation based only on osteological markers. Obviously, for such reconstructions, all available evidence should be involved, and not just single pathologies of the skeletal system.
DOI: 10.17632/s2khj4s7yc
title: Data for: Dichelops melacanthus and Euschistus heros injury on maize: basis for re-evaluating stink bug thresholds for IPM decisions

description: raw data in excell files
DOI: 10.17632/277mrprb3w
title: Dataset of automatic web accessibility evaluation of English-language massive open online courses in adult basic life support

description: The data shows results of automatic web accessibility evaluation of English-language massive open online courses in adult basic life support. For the evaluation the WAVE web accessibility evaluation tool (WebAIM, Utah State University, USA) was utilised. WAVE is a free online service that automatically identifies accessibility violations in a web page content and highlights them in browser interface with embedded icons and indicators. For every eligible course all accessibility errors (indicating failures to meet certain Web Content Accessibility Guidelines (WCAG) 2.1 success criteria that should impact users with disabilities) and all accessibility alerts (indicating web content elements that may cause accessibility issues) were collected. The data shows numbers of detected errors and alerts.
DOI: 10.17632/772swd9nws
title: crop data koraput 2008-2018

description: Primary data of vegetable cultivation area, production amount and irrigation, from 2008-2018, of 2 tribal dominated village of Koraput / Odisha/India
DOI: 10.17632/nvxkpzy46g
title: Dangers of Catcalling: Exploring the Lived Experiences of Women Catcalled in Quezon City (Tables and Figures)

description: -
DOI: 10.6084/m9.figshare.25334032.v1
title: Supplementary Material for: Activation of TGR5 increases urine concentration by inducing AQP2 and AQP3 expression in renal medullary collecting ducts

description: Introduction: G protein-coupled bile acid receptor (TGR5), the first G protein-coupled receptor for bile acids identified, is capable of activating a variety of intracellular signaling pathways after interacting with bile acids. TGR5 plays an important role in multiple physiological processes and is considered to be a potential target for the treatment of various metabolic diseases including type 2 diabetes. Evidence has been emerged that genetically deletion of TGR5 results in an increase in basal urine output, suggesting that it may play a critical role in renal water and salt reabsorption. The present study aims to elucidate the effect and mechanism of TGR5 activation on urine concentration. 
Methods：Mice were treated with TGR5 agonists (LCA and INT-777) for 3 days. The 24-hour urine of mice was collected and analyzed for urine biochemical parameters. The mRNA expressions were detected by real-time PCR, and the protein expressions were detected by western blot. Immunohistochemistry (IHC) and immunofluorescence (IF) were performed to examine the cellular location of proteins. The primary cultured medullary collecting duct cells were pretreated with H89 (a PKA inhibitor) for 1h, followed by 12-hour treatment of LCA and INT-777. Luciferase reporter assays was used to detect the effect of CREB on gene transcription of AQPs. Gel electrophoretic mobility shift assays were used to analyze DNA–protein interactions.
Results: Treatment of mice with the TGR5 agonist LCA and INT-777 markedly reduced urine output and increased urine osmolality, accompanied by a marked increase in AQP2 and AQP3 protein expression and membrane translocation. In cultured primary medullary collecting duct cells, LCA and INT-777 dose-dependently upregulated AQP2 and AQP3 expression in an cAMP/PKA-dependent manner. Mechanistically, both AQP2 and AQP3 gene promoter contains a putative CREB binding site, which can be bound and activated by CREB as assessed by both gene promoter-driven luciferase and gel shift assays. 
Conclusion: Collectively, our findings demonstrate that activation of TGR5 can promote urine concentration by upregulation of AQP2 and AQP3 expression in renal collecting ducts. TGR5 may represent an attractive target for the treatment of patients with urine concentration defect.
DOI: 10.17632/kzn7z6bn4g
title: R Script to do the Wavelet Transform analysis

description: This script was used from an algorithm developed in the R statistics project version 4.0.2, to do the Wavelet Transform analysis, and the following library was used:  

library(biwavelet)
Package ‘biwavelet’
October 12, 2022
Type Package
Title Conduct Univariate and Bivariate Wavelet Analyses
Version 0.20.21
Date 2021-05-24
Author Tarik C. Gouhier, Aslak Grinsted, Viliam Simko
Maintainer Tarik C. Gouhier <tarik.gouhier@gmail.com>
Description This is a port of the WTC MATLAB package written by Aslak Grinsted
and the wavelet program written by Christopher Torrence and Gibert P.
Compo. This package can be used to perform univariate and bivariate
(cross-wavelet, wavelet coherence, wavelet clustering) analyses.
License GPL (>= 2)
URL https://github.com/tgouhier/biwavelet
BugReports https://github.com/tgouhier/biwavelet/issues

biwavelet-package 3
Author(s)
Tarik C. Gouhier
Maintainer: Tarik C. Gouhier <tarik.gouhier@gmail.com>
Code based on WTC MATLAB package written by Aslak Grinsted and the wavelet MATLAB
program written by Christopher Torrence and Gibert P. Compo.

References
Cazelles, B., M. Chavez, D. Berteaux, F. Menard, J. O. Vik, S. Jenouvrier, and N. C. Stenseth. 2008.
Wavelet analysis of ecological time series. Oecologia 156:287-304.
Grinsted, A., J. C. Moore, and S. Jevrejeva. 2004. Application of the cross wavelet transform and
wavelet coherence to geophysical time series. Nonlinear Processes in Geophysics 11:561-566.
Liu, Y., X. San Liang, and R. H. Weisberg. 2007. Rectification of the Bias in the Wavelet Power
Spectrum. Journal of Atmospheric and Oceanic Technology 24:2093-2102.
Rouyer, T., J. M. Fromentin, F. Menard, B. Cazelles, K. Briand, R. Pianet, B. Planque, and N.
C. Stenseth. 2008. Complex interplays among population dynamics, environmental forcing, and
exploitation in fisheries. Proceedings of the National Academy of Sciences 105:5420-5425.
Rouyer, T., J. M. Fromentin, N. C. Stenseth, and B. Cazelles. 2008. Analysing multiple time series
and extending significance testing in wavelet analysis. Marine Ecology Progress Series 359:11-23.
Torrence, C., and G. P. Compo. 1998. A Practical Guide to Wavelet Analysis. Bulletin of the
American Meteorological Society 79:61-78.
Torrence, C., and P. J. Webster. 1998. The annual cycle of persistence in the El Nino/Southern
Oscillation. Quarterly Journal of the Royal Meteorological Society 124:1985-2004.
Veleda, D., R. Montagne, and M. Araujo. 2012. Cross-Wavelet Bias Corrected by Normalizing
Scales. Journal of Atmospheric and Oceanic Technology 29:1401-1408.
DOI: 10.6084/m9.figshare.24145488.v1
title: Supplementary Material for: Novel approach to intradialytic progressive resistance exercise training

description: Physical activity levels are typically undesirably low in chronic kidney disease patients, especially in those undergoing haemodialysis, and particularly on dialysis days. Intradialytic exercise programmes could be a solution to this issue and have been reported to be safe and relatively easily implemented in dialysis clinics. Nevertheless, such implementation has been failing in part due to barriers such as the lack of funding, qualified personnel, equipment, and patient motivation. Intradialytic aerobic exercise has been the most used type of intervention in dialysis clinics. However, resistance exercise may be superior in eliciting potential benefits on indicators of muscle strength and mass. Yet, few intradialytic exercise programmes have focused on this type of intervention and the ones which have report inconsistent benefits, diverging on prescribed exercise intensity, absent or subjective load progression, equipment availability, or exercise supervision. Commonly, intradialytic resistance exercise interventions use free weights, ankle cuffs or elastic bands which hinder load progression and exercise intensity monitoring. Here, we introduce a recently developed intradialytic resistance exercise device and propose an accompanying innovative resistance exercise training protocol which aims to improve the quality of resistance exercise interventions within dialysis treatment sessions.
DOI: 10.6084/m9.figshare.24481210.v1
title: Suppl_Ren et al 2023.zip

description: The phylogenetic analysis of the article from Guangxi, China.
DOI: 10.17632/c4d8yn75my
title: Hierarchical Cluster Analysis and Node Centrality Scores for Industrial Symbiosis Network models of Point Lisas Industrial Estate

description: This dataset contains processed experimental simulation data supporting the results of the unfunded study titled “Filtering ‘3-2’ Industrial Symbiosis Networks at a Carbon-Intensive Cluster in a Small Island Developing State to Reuse CO2 and Water”. The data was processed using the algorithms and software described in the Methods section of that study (https://doi.org/10.1016/j.cherd.2024.10.023).

To investigate the industrial symbiosis (IS) for combined carbon dioxide utilization and water reuse on the Point Lisas Industrial Estate (PLIE), enterprise input-output MILP models of a representative IS network were developed. Discarded water streams with multiple contamination levels and high-purity process CO2 from ammonia processes were selected as materials to be reused in: existing petrochemical plants, a mineral carbonate factory and a propylene carbonate plant. The relative locations of these plants is reported. 

Firstly, exploratory hierarchical cluster analysis (HCA) was performed to discover summary knowledge of the chosen cluster model (e.g. the likely number of subclusters) with the Python library, SciPy using agglomerative clustering. The cophenetic correlation coefficient and dendrograms from the HCA with different linkage functions are reported.

Then economic and environmental objectives were set for each material. Combining economic objectives left a tri-objective problem, which was resolved with ε-constraint optimization and multi-criteria decision-making methods, for two different scenarios - with and without the mineral carbonate and propylene carbonate plants. Graph and network algorithm functions in MATLAB® (ver. R2021a) were used to create network graphs from weighted and directed adjacency matrices, which contained the magnitude and direction of inter-plant flows, and then calculate network metrics that characterize structural attributes, in particular five centrality indices: degree, closeness, betweenness, 'hubs' and 'authorities' were calculated using MATLAB’s centrality function. Along with network connectance, the 'in' and 'out' degree, 'in' and 'out' closeness, betweenness, Kleinberg's 'hub' and 'authority' centrality scores are reported for the individual and combined networks for both scenarios.
DOI: 10.21233/hy1a-ep79
title: NDMCA01 pollen surface sample dataset

description: Raw data for the NDMCA01 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.12452543.v1
title: Supplementary Material for: Socioeconomic Status in Infancy and the Developing Brain: Functional Connectivity of the Hippocampus and Amygdala

description: The development of the hippocampus and amygdala is particularly sensitive to environmental factors, including socioeconomic status (SES). Studies that have investigated associations between SES and brain development markers have rarely focused on connectivity. Accordingly, this longitudinal study examined whether SES in infancy (parental education and income-to-needs ratio) predicts the functional connectivity of the hippocampus and amygdala in late childhood, and in turn whether functional connectivity is associated with child socioemotional adjustment in a middle-class sample. SES indices were measured when children (<i>n</i> = 28) were 7 months old. When children were 10 years of age, they underwent a resting-state functional magnetic resonance imaging exam, and their school teachers completed a questionnaire assessing child socioemotional adjustment. Whole-brain regression analyses, including left and right hippocampi and amygdalae as seeds and SES indices as predictors, revealed that higher parental education predicted stronger functional connectivity between the left and right hippocampi and the right amygdala with the dorsal anterior cingulate cortex, and between the left amygdala and bilateral angular gyrus, after accounting for child age and sex. In turn, the connectivity of these regions was associated with higher child prosocial behavior. These findings contribute to the emerging literature suggesting that SES is associated with variability in the neural substrates of social abilities in children.
DOI: 10.17632/9d8rtypcjm
title: Paperclip as a tool for steatocystoma extraction

description: Paperclip as a tool for steatocystoma extraction
DOI: 10.17632/4ryppc5jbr
title: Replication Data for: University Public Transportation Logistics Service Quality and Student Satisfaction: Empirical Evidence on from Thailand

description: This dataset includes replication data for the paper: "
Sann, R., & Siripipattaworn, S. (2024). University public transportation logistics service quality and student satisfaction: empirical evidence from Thailand. Cogent Business & Management, 11(1). https://doi.org/10.1080/23311975.2024.2331628
".
DOI: 10.17632/bm5d7xk6gw
title: TorchDA: A Python package for performing data assimilation with deep learning forward and transformation functions

description: Data assimilation techniques are often confronted with challenges handling complex high dimensional physical systems, because high precision simulation in complex high dimensional physical systems is computationally expensive and the exact observation functions that can be applied in these systems are difficult to obtain. It prompts growing interest in integrating deep learning models within data assimilation workflows, but current software packages for data assimilation cannot handle deep learning models inside. This study presents a novel Python package seamlessly combining data assimilation with deep neural networks to serve as models for state transition and observation functions. The package, named TorchDA, implements Kalman Filter, Ensemble Kalman Filter (EnKF), 3D Variational (3DVar), and 4D Variational (4DVar) algorithms, allowing flexible algorithm selection based on application requirements. Comprehensive experiments conducted on the Lorenz 63 and a two-dimensional shallow water system demonstrate significantly enhanced performance over standalone model predictions without assimilation. The shallow water analysis validates data assimilation capabilities mapping between different physical quantity spaces in either full space or reduced order space. Overall, this innovative software package enables flexible integration of deep learning representations within data assimilation, conferring a versatile tool to tackle complex high dimensional dynamical systems across scientific domains.
DOI: 10.17632/5kgz4bmt2h
title: Efficient hybrid algorithm for the dynamic creation of wormlike chains in solutions, brushes, melts and glasses

description: We present an updated version of a program that had been published earlier in this journal. The program executes an algorithm for the creation and relaxation of large, dense or diluted homogeneous many particle systems made of wormlike, finite extendable, semiflexible multibead chains and – optionally – solvent particles, which repulse each other. The key feature is its efficiency, its output has been proven to serve as an excellent basis for any subsequent off-lattice computer simulation. The application allows to choose (i) the bead number density or packing fraction, temperature, chain length, system size, concentration, (ii) the interaction potentials, hence the local features such as bond length and bending rigidity of the chains, and (iii) the degree of pre-relaxation, parametrized and expressed through a minimum intermolecular distance. The monodisperse polymers are represented by chains of monomer coordinates in 3D space. During the dynamical two-step process of sample creation the initially (Monte Carlo step 1) predicted global characteristics of the molecular conformations remain as unaffected as possible (during molecular dynamics step 2) and the potential energy and the entropy production are relaxing towards their minima. The potentials, the distribution of bond lengths, the integration time step and temperature are smoothly controlled during the creation/relaxation process until they finally approach their prescribed or physical values. The quality of the algorithm is by its nature independent of concentration, system size or degree of polymerization; the CPU speed is quite independent of the latter quantity and linear in the system size. Chains tethered to a surface (dry polymer brushes) can be generated as well. The previous version of this program (ADJU_v1_0) may be found at http://dx.doi.org/10.1016/S0010-4655(98)00160-X.
DOI: 10.17632/bc5sv6wnd9
title: Media Reported Road Traffic Crash Data

description: The data was obtained from articles documenting crashes in the Times of India. This dataset presents statistical data on different crash variables acquired from news articles. Every row corresponds to information about a single collision. The data was gathered using the Python programming language, specifically the Selenium package, to automate the process of selecting online pages based on the keywords "road", "accident", and "killed". Additionally, it retrieved the Title, Date, and Main Body of the Article. The NLTK package was employed to extract pertinent information from the raw data, while the pandas package was used to organise the data into a data frame. Researchers can utilise this data to gain insights into people's perceptions of road traffic crashes and identify any biases in media reporting that may influence the portrayal of specific crash types.
DOI: 10.6084/m9.figshare.16882045.v1
title: Supplementary material for "Handlist of Stations of the Ayyubid and Mamluk Communication Systems" by Kurt Franz, published in IHC 181 (2022)

description: These are the supplementary materials for an article published in Islamic History and Civilization 181 entitled 'Handlist of Stations of the Ayyubid and Mamluk Communication Systems', by Kurt Franz, with DOI:10.1163/9789004459717_014<br>The file Franz_Handlist_Tables.xls makes the tables 12.1 and 12.2 and also additional tables S1–S3 available as spreadsheets, the latter ones indicating the routes of each governmental communication system and their minimum distances as the pigeon flies. The same is also offered as earth browser data in the file Franz_Handlist_View.kml. It allows the reader to view stations connected through direct lines so that the respective networks are represented, if not through their routings on the ground then at least in a schematic way. For specifications, see Franz_Handlist_ReadMe.pdf.<br>Abstract:<br>The governmental communication systems of the Ayyubid and Mamluk periods present a model case of central powers venturing to mould the geo-spatial arrangement of their realm and politically master it. It is therefore argued that the infrastructure and workings of these systems are an important source for understanding the interlocking of political history with historical geography. This article takes stock, for the first time, of the entire body of stations. Based on mediaeval lists, the archaeological and epigraphic record, and also remote sensing data, it establishes a geo-referenced handlist of 257 localities that held one or more stations, 315 stations in total. Calling for more system-wide and multi-source investigation, the handlist provides the geo-data basis for future in-depth spatial analysis of the Ayyubids’ and Mamluks’ intelligence backbones.<br>