cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9f98c5
title: Occurrence Download

description: A dataset containing 152886 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Swiss National Databank of Mayflies, Stoneflies and Caddiesflies"
 ]
}

 The dataset includes 152886 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010311-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a4df4j
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Aerodramus nuditarsus (Salomonsen, 1962)"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038872-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pcffkn
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bubalus mindorensis Heude, 1888",
 "Country is Philippines"
 ]
}

 The dataset includes 36 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009755-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u9yfeh
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Conophytum stephanii Schwantes"
 ]
}

 The dataset includes 25 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012240-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xnyzgh
title: Occurrence Download

description: A dataset containing 6109 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Buteogallus gundlachii (Cabanis, 1855)"
 ]
}

 The dataset includes 6109 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038920-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jvgvx0
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Human Observation"
 ]
 },
 "Country is Nepal",
 "HasCoordinate is true",
 "TaxonKey is Pnoepyga pusilla Hodgson, 1845",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 19 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009755-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p3m34u
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Rhinella arequipensis (Vellard, 1959)"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048466-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y9bs6h
title: Occurrence Download

description: A dataset containing 1584 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Acridotheres burmannicus (Jerdon, 1862)"
 ]
}

 The dataset includes 1584 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038940-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hnvzvg
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Reithrodontomys tenuirostris Merriam, 1901",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 55 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009755-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y8shxr
title: Occurrence Download

description: A dataset containing 1205 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Berberis aetnensis C.Presl"
 ]
}

 The dataset includes 1205 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054392-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vhz27r
title: Occurrence Download

description: A dataset containing 1350 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (CR, EN, VU, NT, LC)",
 "OccurrenceStatus is Present",
 "TaxonKey is Liliopsida",
 "Year is 2023"
 ]
}

 The dataset includes 1350 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038956-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mysnvc
title: Occurrence Download

description: A dataset containing 127 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Berberis acuminata Franch."
 ]
}

 The dataset includes 127 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054375-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yge1ke
title: Occurrence Download

description: A dataset containing 1760313 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Panama",
 {
 "or" : [
 "Issue is Coordinate rounded",
 "Issue is Geodetic datum assumed WGS84",
 "Issue is Coordinate reprojected",
 "Issue is Country derived from coordinates"
 ]
 },
 "TaxonKey is Aves"
 ]
}

 The dataset includes 1760313 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006508-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5a6tk9
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Encephalartos laevifolius Stapf & Burtt Davy"
 ]
}

 The dataset includes 119 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040951-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nvw293
title: Occurrence Download

description: A dataset containing 471213 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "DatasetKey is Observation.org, Nature data from around the World",
 "Month is January",
 "OccurrenceStatus is Present",
 "Year is 2023"
 ]
}

 The dataset includes 471213 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039760-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tn0ymg
title: Occurrence Download

description: A dataset containing 1802651 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1802651 records from 652 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009755-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14689099
title: Global analysis of fungal biosynthetic gene clusters reveals the diversification of diketopiperazine biosynthesis

description: The most extensive fungal BGC atlas based on 13,125 fungal genomes.
DOI: 10.5281/zenodo.14689100
title: Global analysis of fungal biosynthetic gene clusters reveals the diversification of diketopiperazine biosynthesis

description: The most extensive fungal BGC atlas based on 13,125 fungal genomes.
DOI: 10.5281/zenodo.14849711
title: Global analysis of fungal biosynthetic gene clusters reveals the diversification of diketopiperazine biosynthesis

description: The most extensive fungal BGC atlas based on 13,125 fungal genomes.
DOI: 10.15468/dl.zgn3s7
title: Occurrence Download

description: A dataset containing 7781 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-45.10602 -3.3773,-44.37213 -3.46503,-43.73053 -2.45565,-44.49078 -2.11315,-45.10602 -3.3773))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 7781 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0255442-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14848725
title: Global Hourly Seamless Aerosol Optical Depth Dataset (2000) at 0.05°×0.05° Resolution

description: This dataset was producted based on MERRA-2 AOD, MODIS MAIAC AOD.
DOI: 10.5281/zenodo.14848726
title: Global Hourly Seamless Aerosol Optical Depth Dataset (2000) at 0.05°×0.05° Resolution

description: This dataset was producted based on MERRA-2 AOD, MODIS MAIAC AOD.
DOI: 10.5281/zenodo.14849402
title: This is the dataset for the manuscript "SpectroPipeR - a streamlining post Spectronaut® DIA-MS data analysis R package".

description: The dataset includes 2 experiments analyzed with Spectronaut® to demonstrate the capabilities of the SpectroPipeR package (results: https://github.com/stemicha/SpectroPipeR_examples).

Example 1:

In the realm of mass spectrometry, species mix experiments have become a standard procedure, routinely employed in facilities worldwide. These experiments are used to benchmark the performance of various methods and devices. For the analysis we used the Exploris480 data from Reder et al., 2023.

The data can be obtained from: https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=0f33717d84fd45b1a318ad40670022cc

Reder, A. et al. MassSpecPreppy—An end‐to‐end solution for automated protein concentration determination and flexible sample digestion for proteomics applications. PROTEOMICS (2023) doi:10.1002/pmic.202300294.

Example 2:

In the study from Vitko et al. 2024, plasma samples from 20 late-stage lung cancer patients and 20 control individuals were analyzed using the timsTOF HT mass spectrometer. The samples were processed with the Proteograph Product Suite, which employs five distinct nanoparticles (NP1−5) to compress the dynamic range of the plasma proteome, enabling deeper proteome profiling. Specifically, the NP2 nanoparticle was used for enrichment of plasma. In this example the Evosep/timsTOF HT measurements of NP2 were used.

https://pubs.acs.org/doi/10.1021/acs.jproteome.3c00646

Vitko, D. et al. timsTOF HT Improves Protein Identification and Quantitative Reproducibility for Deep Unbiased Plasma Protein Biomarker Discovery. J. Proteome Res. (2024) doi:10.1021/acs.jproteome.3c00646.

__________________________________________________________________________________________________________________

Additionally, the dataset includes the R code used for analysis with SpectroPipeR, as well as the source package of SpectroPipeR version 0.4.0 from the accepted manuscript.
DOI: 10.5281/zenodo.14849403
title: This is the dataset for the manuscript "SpectroPipeR - a streamlining post Spectronaut® DIA-MS data analysis R package".

description: The dataset includes 2 experiments analyzed with Spectronaut® to demonstrate the capabilities of the SpectroPipeR package (results: https://github.com/stemicha/SpectroPipeR_examples).

Example 1:

In the realm of mass spectrometry, species mix experiments have become a standard procedure, routinely employed in facilities worldwide. These experiments are used to benchmark the performance of various methods and devices. For the analysis we used the Exploris480 data from Reder et al., 2023.

The data can be obtained from: https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=0f33717d84fd45b1a318ad40670022cc

Reder, A. et al. MassSpecPreppy—An end‐to‐end solution for automated protein concentration determination and flexible sample digestion for proteomics applications. PROTEOMICS (2023) doi:10.1002/pmic.202300294.

Example 2:

In the study from Vitko et al. 2024, plasma samples from 20 late-stage lung cancer patients and 20 control individuals were analyzed using the timsTOF HT mass spectrometer. The samples were processed with the Proteograph Product Suite, which employs five distinct nanoparticles (NP1−5) to compress the dynamic range of the plasma proteome, enabling deeper proteome profiling. Specifically, the NP2 nanoparticle was used for enrichment of plasma. In this example the Evosep/timsTOF HT measurements of NP2 were used.

https://pubs.acs.org/doi/10.1021/acs.jproteome.3c00646

Vitko, D. et al. timsTOF HT Improves Protein Identification and Quantitative Reproducibility for Deep Unbiased Plasma Protein Biomarker Discovery. J. Proteome Res. (2024) doi:10.1021/acs.jproteome.3c00646.

__________________________________________________________________________________________________________________

Additionally, the dataset includes the R code used for analysis with SpectroPipeR, as well as the source package of SpectroPipeR version 0.4.0 from the accepted manuscript.
DOI: 10.5281/zenodo.14849694
title: Victorian Road Statistics

description: Data Sets were collected, collated and accessed from The Victorian Governments Department of Transport and Planning https://discover.data.vic.gov.au/dataset/victoria-road-crash-data

In accordance with the Creative Commons Attribution 4.0 international, which the Department of Transport and Planning has assigned to this data set, the below data has been cleaned for further analysis.
DOI: 10.5281/zenodo.14849695
title: Victorian Road Statistics

description: Data Sets were collected, collated and accessed from The Victorian Governments Department of Transport and Planning https://discover.data.vic.gov.au/dataset/victoria-road-crash-data

In accordance with the Creative Commons Attribution 4.0 international, which the Department of Transport and Planning has assigned to this data set, the below data has been cleaned for further analysis.
DOI: 10.15468/dl.yvcgnp
title: Occurrence Download

description: A dataset containing 1327 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xanthium strumarium subsp. italicum (Moretti) D.Löve"
 ]
}

 The dataset includes 1327 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023431-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14849749
title: Plot data for "Collective dynamics in heavy and light-ion collisions -- I) Kinetic Theory vs. Hydrodynamics"

description: This archive contains the gnuplot scripts that were used to generate the plots of arXiv:2411.19708, together with all necessary data files.

The published plots were generated using gnuplot 5.4.2.
DOI: 10.5281/zenodo.14849750
title: Plot data for "Collective dynamics in heavy and light-ion collisions -- I) Kinetic Theory vs. Hydrodynamics"

description: This archive contains the gnuplot scripts that were used to generate the plots of arXiv:2411.19708, together with all necessary data files.

The published plots were generated using gnuplot 5.4.2.
DOI: 10.5522/04/28381610
title: NCSE v2.0: A Dataset of OCR-Processed 19th Century English Newspapers

description: NCSE v2.0 Dataset RepositoryThis repository contains the NCSE v2.0 dataset and associated supporting data used in the paper "Reading the unreadable: Creating a dataset of 19th century English newspapers using image-to-text language models".Dataset OverviewThe NCSE v2.0 is a digitized collection of six 19th-century English periodicals containing:82,690 pages1.4 million entries321 million words1.9 billion charactersThe dataset includes:1.1 million text entries198,000 titles17,000 figure descriptions16,000 tablesRepository Contents<b>NCSE v2.0 Dataset</b>NCSE_v2.zip: a folder containing a parquet file for each of the periodicals as well as a readme file.<b>Bounding Box Dataset</b><br>A zip file called bounding_box.zip. Containspost_process: A folder of the processed periodical bounding box datapost_process_fill: A folder of the processed periodical bounding box data WITH column filling.bbox_readme.txt: a readme file and data description for the bounding boxes<b>Test Sets</b>cropped_images.zip: 378 images cropped from the NCSE test set pages, all 2-bit png filesground_truth: 358 text files corresponding to the text from the cropped_images folder<b>Classification Training Data</b><br>The below files are used for training the classification models. They contain 12000 observations 2000 from each periodical. The labels were classified using mistral-large-2411. This data is used to train the ModernBERT classifier described in the paper. The topics are taken from the International Press Telecommunications Council (IPTC) subject codes.silver_IPTC_class.parquet: IPTC topic classification silver setsilver_text_type.parquet: Text-type classification silver set<b>Classified Data</b><br>The zip file "classification_data.zip" with all rows classified using the ModernBERT classifer described in the paper.IPTC_type_classified.zip: contains one parquet file per periodicaltext_type_classified.zip: contains one parquet file per periodicalclassification_readme.md: Description of the data<b>Classification Mappings</b><br>Data for mapping the classification codes to human readable names.class_mappings.zip: contains a json for each classification typeIPTC_class_mapping.jsontext_type_class_mapping.jsonOriginal ImagesThe original page images can be found at the King's College London Repositories:Monthly RepositoryNorthern StarLeaderEnglish Woman's JournalTomahawkPublishers' CircularOr via the project central archiveCitationIf you use this dataset, please cite:<pre><pre>No citation data currently available<br></pre></pre>Related CodeAll original code related to this project including the creation of the datasets and thier analysis can be found at:<br>https://github.com/JonnoB/ereading_the_unreadableContactFor questions about the dataset, please create an issue in this repository.Usage RightsIn keeping with the original NCSE dataset, all data is made available under a Creative Commons Attribution 4.0 International License (CC BY).
DOI: 10.6084/m9.figshare.28388486
title: Supplementary files of "Fermentation characteristics of <i>Lactobacillus helveticus</i> 3-4and <i>Kazachstania unispora</i> A-3 complex starter: Enhancingthe fermentation performance and flavor of koumiss"

description: Supplementary files of "Fermentation characteristics of <i>Lactobacillus helveticus</i> 3-4and <i>Kazachstania unispora</i> A-3 complex starter: Enhancingthe fermentation performance and flavor of koumiss"
DOI: 10.6084/m9.figshare.28388486.v1
title: Supplementary files of "Fermentation characteristics of <i>Lactobacillus helveticus</i> 3-4and <i>Kazachstania unispora</i> A-3 complex starter: Enhancingthe fermentation performance and flavor of koumiss"

description: Supplementary files of "Fermentation characteristics of <i>Lactobacillus helveticus</i> 3-4and <i>Kazachstania unispora</i> A-3 complex starter: Enhancingthe fermentation performance and flavor of koumiss"
DOI: 10.15468/dl.zx28v7
title: Occurrence Download

description: A dataset containing 28790554 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Accipiter brevipes (Severtzov, 1850), Accipiter soloensis (Horsfield, 1821), Acrocephalus arundinaceus (Linnaeus, 1758), Acrocephalus schoenobaenus (Linnaeus, 1758), Agapornis fischeri Reichenow, 1887, Agapornis roseicollis (Vieillot, 1818), Agropsar philippensis (J.R.Forster, 1781), Agropsar sturninus (Pallas, 1776), Aix sponsa (Linnaeus, 1758), Alaudala heinei (Homeyer, 1873), Amazona amazonica (Linnaeus, 1766), Anarhynchus Quoy & Gaimard, 1832, Anarhynchus veredus (Gould, 1848), Anastomus lamelligerus Temminck, 1823, Anas zonorhyncha Swinhoe, 1866, Anorrhinus austeni Jerdon, 1872, Anous minutus F.Boie, 1844, Anser cygnoides (Linnaeus, 1758), Anser fabalis (Latham, 1787), Anser serrirostris Gould, 1852, Anthus pratensis (Linnaeus, 1758), Ara ararauna (Linnaeus, 1758), Ara chloropterus G.R.Gray, 1859, Aratinga jandaya (Gmelin, 1788), Ardenna grisea (J.F.Gmelin, 1789), Ardenna tenuirostris (Temminck, 1836), Ardeola speciosa (Horsfield, 1821), Bombycilla garrulus (Linnaeus, 1758), Branta ruficollis (Pallas, 1769), Butastur liventer (Temminck, 1827), Cairina moschata (Linnaeus, 1758), Calandrella dukhunensis (Sykes, 1832), Calcarius lapponicus (Linnaeus, 1758), Calidris acuminata (Horsfield, 1821), Calidris melanotos (Vieillot, 1819), Calidris subruficollis (Vieillot, 1819), Calliope pectardens A.David, 1877, Calonectris diomedea (Scopoli, 1769), Carpodacus dubius Przewalski, 1876, Carpodacus stoliczkae (Hume, 1874), Carpodacus trifasciatus J.Verreaux, 1871, Carpodacus vinaceus J.Verreaux, 1871, Carpospiza brachydactyla (Bonaparte, 1850), Ceyx rufidorsa Strickland, 1847, Chlidonias leucopterus (Temminck, 1815), Chlidonias niger (Linnaeus, 1758), Chrysococcyx basalis (Horsfield, 1821), Chrysocolaptes socialis Koelz, 1939, Cinnyris Cuvier, 1816, Clangula hyemalis (Linnaeus, 1758), Coracias affinis McClelland, 1839, Coracias cyanogaster Cuvier, 1816, Coragyps atratus (Bechstein, 1793), Corvus albus Statius Muller, 1776, Crex crex (Linnaeus, 1758), Curruca communis (Latham, 1787), Curruca crassirostris (Cretzschmar, 1830), Curruca nisoria (Bechstein, 1792))"
 ]
}

 The dataset includes 28790554 records from 5114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023426-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.