cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21523485.v3
title: Lessons from a community-based death review of patients with tuberculosis from western India

description: Background: Understanding factors leading to death following the onset of symptoms of tuberculosis (TB) is important to predict prognosis among patients with TB. With aiming the End TB strategy, mortality is declining not as expected globally and in India. Although India is one of the highest incidence countries globally, India lacks evidence of understanding of the factors for TB death. Thus, this study aims to document the characteristics of deaths due to TB in the Western state of India. Methods: About 74 deaths were randomly documented from 7 different geographic regions of Gujarat through a community-based death review from Oct 2021 to February 2022. The trained researchers administered a semi-structured questionnaire to capture the demographic, socioeconomic, history of comorbidity and addiction, medical history, case rec<strong>ords, and chronology of events preceding death.</strong> Results: Most deaths happened within 24 weeks from the onset of symptoms, which reduced to half (12 weeks) in the other cascades, i.e., diagnosis and treatment initiation to the death. Out of 74 reviewed deaths, 47 (64%) deaths had the cause of death as TB, with an average duration of 87 days from onset of symptoms to death. The study observed the time, place, and person distribution on different epidemiological parameters. While analyzing narratives from the relative, the gaps between the system (service provider) and demand (patient perspective) sides were synthesized. Conclusion: It is recommended to conduct such kind of community-based death reviews in the routine practices of the National TB Elimination Program to ensure the appropriate review of the underlying causes of deaths due to TB. The matrix developed in this study is easy to replicate in any other death reviews to understand the intercept of the supply-demand side determinants for the deaths.
DOI: 10.5258/soton/wp00669
title: Modelled gridded population estimates for the Kinshasa, Kongo-Central, Kwango, Kwilu, and Mai-Ndombe provinces in the Democratic Republic of the Congo 2018, version 2.0.

description: These data were produced by the WorldPop Research Group at the University of Southampton. This work is part of the GRID3 (Geo-Referenced Infrastructure and Demographic Data for Development) project funded by the Bill and Melinda Gates Foundation (BMGF)
DOI: 10.5258/soton/wp00655
title: Bottom-up gridded population estimates for Nigeria, version 1.2

description: These data were produced by the WorldPop Research Group at the University of Southampton. This work was part of the GRID3 project with funding from the Bill and Melinda Gates Foundation and the United Kingdom’s Department for International Development (OPP1182408). Project partners included the United Nations Population Fund, Center for International Earth Science Information Network in the Earth Institute at Columbia University, and the Flowminder Foundation. These data may be distributed using a Creative Commons Attribution Share-Alike 4.0 License. Contact release@worldpop.org for more information.
DOI: 10.5258/soton/wp00662
title: Bottom-up gridded population estimates for Zambia, version 1.0

description: Bottom-up gridded population estimates for Zambia
DOI: 10.5258/soton/wp00705
title: Bayesian gridded population estimates for Ghana 2019 (GHA v2.0).

description: This data release includes gridded estimates of population sizes at approximately 100 m resolution with national coverage across Ghana. This includes estimates of total population sizes, populations in 36 different age-sex groups, people per household, people per building, households per building, and statistical measures of uncertainty. These results were produced using census microdata from IPUMS International and building footprints from Maxar/Ecopia.
DOI: 10.5258/soton/wp00659
title: South Sudan 2019 gridded population estimates from census projections adjusted for displacement, version 1.0

description: These data were produced by the WorldPop Research Group at the University of Southampton. This work was funded by the Bill and Melinda Gates Foundation (BMGF) and the United Kingdom's Department for International Development (OPP1182408). The primary intended use of these data was aiding the BMGF field teams. These data may be distributed using a Creative Commons Attribution Share-Alike 4.0 License. Contact release@worldpop.org for more information. This dataset provides population estimates for each settled 100m grid square in South Sudan. The grid square values were derived using the National Bureau of Statistics' 2019 population projection estimates that were adjusted to account for displacement of people. The locations people have been displaced to were directly obtained from IOM's Displacement Tracking Matrix (DTM). The locations people have been displaced from were derived using DTM and the Armed Conflict Locations and Events Database (ACLED). Numbers of displaced people per location were calculated using recorded numbers of international refugees and internally displaced persons.
DOI: 10.5258/soton/wp00668
title: Census disaggregated gridded population estimates for Sierra Leone (2015), version 1.0

description: Census disaggregated gridded population estimates for Sierra Leone (2015), version 1.0
DOI: 10.5258/soton/wp00711
title: Ease of Social Distancing Index, mapped for urban areas in sub-Saharan Africa, version 1.0

description: Social distancing is a public health measure intended to reduce infectious disease transmission, by maintaining physical distance between individuals or households. In the context of the COVID-19 pandemic, populations in many countries around the world have been advised to maintain social distance (also referred to as physical distance), with distances of 6 feet or 2 metres commonly advised. Feasibility of social distancing is dependent on the availability of space and the number of people, which varies geographically. In locations where social distancing is difficult, a focus on alternative measures to reduce disease transmission may be needed. To help identify locations where social distancing is difficult, we have developed an ease of social distancing index. This dataset provides index values for small spatial units (vector polygons) within urban areas in sub-Saharan Africa. The ease of social distancing index is calculated based on the space available around buildings and population density. Index values were calculated for small spatial units, typically bounded by roads, rivers or other features. Measures of population density were calculated from high-resolution gridded population datasets from WorldPop, and the space available around buildings was calculated using building footprint polygons derived from satellite imagery.
DOI: 10.6084/m9.figshare.21557931
title: KEGG results of Myristica fatua

description: KEGG results of <em>Myristica fatua</em>
DOI: 10.6084/m9.figshare.21557931.v1
title: KEGG results of Myristica fatua

description: KEGG results of <em>Myristica fatua</em>
DOI: 10.6084/m9.figshare.21557844
title: Species distribution of Myristica fatua

description: Species distribution of <em>Myristica fatua</em>
DOI: 10.6084/m9.figshare.21557844.v1
title: Species distribution of Myristica fatua

description: Species distribution of <em>Myristica fatua</em>
DOI: 10.6084/m9.figshare.21557841
title: Similarity distribution of Myristica fatua

description: Similarity distribution of <em>Myristica fatua</em>
DOI: 10.6084/m9.figshare.21557841.v1
title: Similarity distribution of Myristica fatua

description: Similarity distribution of <em>Myristica fatua</em>
DOI: 10.6084/m9.figshare.21557838
title: E-value distribution of Myristica fatua

description: E-value distribution of <em>Myristica fatua</em>
DOI: 10.6084/m9.figshare.21557838.v1
title: E-value distribution of Myristica fatua

description: E-value distribution of <em>Myristica fatua</em>
DOI: 10.6084/m9.figshare.21526272
title: Reads quality statistics of Myristica fatua

description: Reads quality statistics of Myristica fatua
DOI: 10.6084/m9.figshare.21526272.v1
title: Reads quality statistics of Myristica fatua

description: Reads quality statistics of Myristica fatua
DOI: 10.6084/m9.figshare.21524646
title: Functional annotation from protein sequence database of Uniprot, Myristica fatua

description: Functional annotation from protein sequence database of Uniprot, Myristica fatua
DOI: 10.6084/m9.figshare.21524646.v1
title: Functional annotation from protein sequence database of Uniprot, Myristica fatua

description: Functional annotation from protein sequence database of Uniprot, Myristica fatua
DOI: 10.6084/m9.figshare.21524634
title: Gene Ontology results of Myristica fatua

description: Gene Ontology results of <em>Myristica fatua</em>
DOI: 10.6084/m9.figshare.21524634.v1
title: Gene Ontology results of Myristica fatua

description: Gene Ontology results of <em>Myristica fatua</em>
DOI: 10.6084/m9.figshare.21524607
title: Results of microsatellite region finding of Myristica fatua

description: Results of microsatellite region finding of Myristica fatua
DOI: 10.6084/m9.figshare.21524607.v1
title: Results of microsatellite region finding of Myristica fatua

description: Results of microsatellite region finding of Myristica fatua
DOI: 10.6084/m9.figshare.21589767.v1
title: Ecological factors influencing the breeding performance of great tits (Parus major) in artificial nest boxes

description: The percentage of shrub, downed tree, and grass cover was calculated to examine habitat factors. Clutch size, hatching success, and fledgling success were selected as dependent variables. Recorded locations of nest boxes were used to estimate the distance from roads.
DOI: 10.6084/m9.figshare.21524457
title: Transcriptome assembly transcripts of Myristica fatua

description: Transcriptome assembly transcripts of Myristica fatua
DOI: 10.6084/m9.figshare.21524457.v1
title: Transcriptome assembly transcripts of Myristica fatua

description: Transcriptome assembly transcripts of Myristica fatua
DOI: 10.6084/m9.figshare.13562582
title: Data from: Sequential colonization of oceanic archipelagos led to a species-level radiation in the common chaffinch complex (Aves: Fringilla coelebs)

description: We include the vcf files used for the different analysis and a file with individuals information:<br><b><br></b><b>PIN_CCHAZEFI_MAC_biall_dp460_q30_maf0018_hwe00001_miss075_count166</b><br><b><br></b>Complete dataset of 159,534 SNPs after initial filtering.<br><b>PIN_CCHAZEFI_MAC_biall_dp460_q30_maf0018_hwe00001_miss075_count166_neutral01_LE05</b><br><b><br></b>Dataset of 100,166.166 neutral SNPs from 82 individuals in vcf format. Includes an individual of <i>F.teydea </i>as outgroup (TEN4).Used in RAxML analysis.<br><b><br></b><b>PIN_CCHAZEFI_MAC_biall_dp460_q30_maf0018_hwe00001_miss075_count166_neutral01_LE05_noTEN4</b><br><br>Dataset of 100.166 neutral SNPs from 81 individuals (excluding the outgroup) in vcf format.<b><br></b><b>PIN_CCHAZEFI_MAC_biall_dp460_q30_maf0018_hwe00001_miss095_count166_neutral01_LE05_2indv_outg_SNAPP.</b><br><br>Dataset of 15,836 neutral SNPs, including 19 individuals (2 per population + outgroup) used for SNAPP analysis.<b><br></b><b>PIN_CCHAZEFI_MAC_biall_dp460_q30_maf0018_hwe00001_miss095_count166_neutral01_LE05_STRUCTURE</b><br><br>Dataset of 16,416 independent neutral SNPs from 81 samples (no outgroup) in vcf format for STRUCTURE analysis.<br><br><b>MAC_indvs_vcfs</b><b><br></b>Information about the individuals included in the vcfs.<br><br>
DOI: 10.5517/ccdc.csd.cc2bhx3w
title: CCDC 2160238: Experimental Crystal Structure Determination

description: Related Article: Mao Le, Qing-Ling Ni, Li-Hong Zeng, Cai-Yun Yuan, Xiu-Jian Wang, Shi-Ming Li, Liu-Cheng Gui|2022|Mol.Catal.|533|112786|doi:10.1016/j.mcat.2022.112786
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bhx4x
title: CCDC 2160239: Experimental Crystal Structure Determination

description: Related Article: Mao Le, Qing-Ling Ni, Li-Hong Zeng, Cai-Yun Yuan, Xiu-Jian Wang, Shi-Ming Li, Liu-Cheng Gui|2022|Mol.Catal.|533|112786|doi:10.1016/j.mcat.2022.112786
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.21589767
title: Ecological factors influencing the breeding performance of great tits (Parus major) in artificial nest boxes

description: The percentage of shrub, downed tree, and grass cover was calculated to examine habitat factors. Clutch size, hatching success, and fledgling success were selected as dependent variables. Recorded locations of nest boxes were used to estimate the distance from roads.
DOI: 10.6084/m9.figshare.21589767.v3
title: Ecological factors influencing the breeding performance of great tits (Parus major) in artificial nest boxes

description: The percentage of shrub, downed tree, and grass cover was calculated to examine habitat factors. Clutch size, hatching success, and fledgling success were selected as dependent variables. Recorded locations of nest boxes were used to estimate the distance from roads.
DOI: 10.6084/m9.figshare.21589767.v2
title: Ecological factors influencing the breeding performance of great tits (Parus major) in artificial nest boxes

description: The percentage of shrub, downed tree, and grass cover was calculated to examine habitat factors. Clutch size, hatching success, and fledgling success were selected as dependent variables. Recorded locations of nest boxes were used to estimate the distance from roads.
DOI: 10.5281/zenodo.4584993
title: Data repository for Fault friction during simulated seismic slip pulses

description: Raw laboratory data to accompany publication Fault friction during simulated seismic slip pulses
DOI: 10.5281/zenodo.4644227
title: Data repository for Fault friction during simulated seismic slip pulses

description: Laboratory data to accompany publication Fault friction during simulated seismic slip pulses, submitted to Journal of Geophysical Research: Solid Earth
DOI: 10.5281/zenodo.4584992
title: Data repository for Fault friction during simulated seismic slip pulses

description: Laboratory data to accompany publication Fault friction during simulated seismic slip pulses, submitted to Journal of Geophysical Research: Solid Earth
DOI: 10.5281/zenodo.4644233
title: Data repository for Fault friction during simulated seismic slip pulses

description: Laboratory data to accompany publication Fault friction during simulated seismic slip pulses, submitted to Journal of Geophysical Research: Solid Earth
DOI: 10.5281/zenodo.4644245
title: Data repository for Fault friction during simulated seismic slip pulses

description: Laboratory data to accompany publication Fault friction during simulated seismic slip pulses, submitted to Journal of Geophysical Research: Solid Earth
DOI: 10.6084/m9.figshare.20780419
title: Supplementary data

description: Supplementary data for a research artile "A highly contiguous genome assembly of red perilla (<em>Perilla frutescens</em>) domesticated in Japan". <strong>Supplementary Table S1.</strong> Source of protein-level functional annotation of Pfru_yukari_1.0. <strong>Supplementary</strong> <strong>Table S2.</strong> Statistics of the contigs generated by Hifiasm. <strong>Supplementary</strong> <strong>Table S3.</strong> AGP file (scaffolds_FINAL.agp) generated by SALSA2 describing the contig assignment of each scaffold. <strong>Supplementary</strong> <strong>Table S4.</strong> Length and the components of 20 pseudochromosomes. <strong>Supplementary</strong> <strong>Table S5.</strong> Summary of the gene annotation of each of the three methods. <strong>Supplementary</strong> <strong>Table S6.</strong> The GGSERACH results corresponds to the identified genes in Figure 3. <strong>Supplementary</strong> <strong>Figure S1.</strong> Merqury assembly spectrum plots of haplotype 1 (hap1) and haplotype 2 (hap2). <strong>Supplementary</strong> <strong>Figure S2.</strong> Dot-plot alignment between the draft scaffolds (indicated as “s”) (longest 25 scaffolds; scaffold_1–25) and reference PF40 genome assembly. Blue dots represent +/+ strand alignments and red dots represent +/- strand alignments. <strong>Supplementary</strong> <strong>Figure S3.</strong> Hi-C contact map of the draft scaffolds (indicated as “s”) generated by SALSA2.
DOI: 10.6084/m9.figshare.20780419.v1
title: Supporting Information

description: Supporting information for a research artile "A highly contiguous genome assembly of red perilla (<em>Perilla frutescens</em>) domesticated in Japan". <strong>Table S1.</strong> Statistics of the contigs generated by Hifiasm. <strong>Table S2.</strong> AGP file (scaffolds_FINAL.agp) generated by SALSA2 describing the contig assignment of each scaffold. <strong>Table S3.</strong> Length and the components of 20 pseudochromosomes. <strong>Table S4.</strong> Summary of the gene annotation of each of the three methods. <strong>Figure S1. </strong>Merqury assembly spectrum plots of haplotype 1 (hap1) and haplotype 2 (hap2). <strong>Figure S2. </strong>Dot-plot alignment between the draft scaffolds (indicated as “s”) (longest 25 scaffolds; scaffold_1–25) and reference PF40 genome assembly. Blue dots represent +/+ strand alignments and red dots represent +/- strand alignments. <strong>Figure S3. </strong>Hi-C contact map of the draft scaffolds (indicated as “s”) generated by SALSA2.
DOI: 10.25405/data.ncl.21539340
title: npj paper data.xlsx

description: Data supporting a publication in <em>npj Biofilms and Microbiomes </em>(Rostami et al.). A single Excel spreadsheet contains all quantitative data underpinning figures.
DOI: 10.25405/data.ncl.21539340.v1
title: npj paper data.xlsx

description: Data supporting a publication in <em>npj Biofilms and Microbiomes </em>(Rostami et al.). A single Excel spreadsheet contains all quantitative data underpinning figures.
DOI: 10.6084/m9.figshare.20780995
title: Gene annotation and functional annotation of the protein coding genes

description: Gene annotation and functional annotation of the protein coding genes for the genome assembly of <em>Perilla frutescens</em> (Pfru_yukari_1.0; DDBJ accession numbers BRKX01000001 to BRKX01000071). <strong>yukari_merged_gff_Pfg.gff3</strong>: Gene annotation <strong>yukari_merged_gff_Pfg.CDS.fasta</strong>: Nucleotide sequences corresponding to all CDS features <strong>yukari_merged_gff_Pfg.protein.fasta</strong>: Protein sequences corresponding to all CDS features <strong>FF4P-P_frutescens-protein220720_Pfg.tsv</strong>: Functional annotation of the protein coding genes <br> <br>
DOI: 10.34740/kaggle/dsv/4556313
title: Time Series Room Temperature Data
DOI: 10.5281/zenodo.7339128
title: data

description: -
DOI: 10.5281/zenodo.7339129
title: data

description: -
DOI: 10.5281/zenodo.7341269
title: data

description: -
DOI: 10.5281/zenodo.7338055
title: Fleiss kappa for doc-2-doc relevance assessment

description: Here we present a table summarizing the Fleiss’ kappa results. The Fleiss’ Kappa was calculated as a way to measure the degree of agreement between four annotators who evaluated the relevance of a set of documents (15 evaluation articles) regarding its corresponding “reference article”. The table contains 7 columns, the first one presents the topics, 8 in total. The second column shows the “reference articles”, represented by their PubMed-ID and organized by topic. The third column shows the Fleiss’ Kappa results. The fourth column shows the interpretation of the Fleiss' Kappa results being: i) “Poor” results &lt;0.20, ii) “Fair” results within 0.21 - 0.40, and iii) “Moderate” results within 0.41 - 0.60. The fifth column shows the PubMed-IDs of evaluation articles rated by the four annotators as “Relevant” regarding its corresponding “reference article”. The sixth column shows the PubMed-IDs of evaluation articles rated by the four annotators as “Partially relevant” regarding its corresponding “reference article”. The seventh column shows the PubMed-IDs of evaluation articles rated by the four annotators as “Non-relevant” regarding its corresponding “reference article”. <strong>Acknowledgements</strong> <br> This work is part of the STELLA project funded by DFG (project no. 407518790). This work was supported by the BMBF-funded de.NBI Cloud within the German Network for Bioinformatics Infrastructure (de.NBI) (031A532B, 031A533A, 031A533B, 031A534A, 031A535A, 031A537A, 031A537B, 031A537C, 031A537D, 031A538A).<br>
DOI: 10.5281/zenodo.7338056
title: Fleiss kappa for doc-2-doc relevance assessment

description: Here we present a table summarizing the Fleiss’ kappa results. The Fleiss’ Kappa was calculated as a way to measure the degree of agreement between four annotators who evaluated the relevance of a set of documents (15 evaluation articles) regarding its corresponding “reference article”. The table contains 7 columns, the first one presents the topics, 8 in total. The second column shows the “reference articles”, represented by their PubMed-ID and organized by topic. The third column shows the Fleiss’ Kappa results. The fourth column shows the interpretation of the Fleiss' Kappa results being: i) “Poor” results &lt;0.20, ii) “Fair” results within 0.21 - 0.40, and iii) “Moderate” results within 0.41 - 0.60. The fifth column shows the PubMed-IDs of evaluation articles rated by the four annotators as “Relevant” regarding its corresponding “reference article”. The sixth column shows the PubMed-IDs of evaluation articles rated by the four annotators as “Partially relevant” regarding its corresponding “reference article”. The seventh column shows the PubMed-IDs of evaluation articles rated by the four annotators as “Non-relevant” regarding its corresponding “reference article”. <strong>Acknowledgements</strong> <br> This work is part of the STELLA project funded by DFG (project no. 407518790). This work was supported by the BMBF-funded de.NBI Cloud within the German Network for Bioinformatics Infrastructure (de.NBI) (031A532B, 031A533A, 031A533B, 031A534A, 031A535A, 031A537A, 031A537B, 031A537C, 031A537D, 031A538A).<br>
DOI: 10.6084/m9.figshare.21355304
title: The views of women and pharmacists on the desirability of a progestogen-only pill over the counter. Results of a survey in Germany, Italy and Spain

description: To explore the perceived need and enthusiasm for over the counter (OTC) progestogen-only pills (POP). A web-based survey of 1000 sexually active women (16–45) and 100 pharmacists in Germany, Italy and Spain. Despite not wanting to conceive, 5–6% of women in each country were not using contraception and 8–20% were using methods less effective than condoms. At least 74% of respondents felt knowledgeable about the different contraceptives available but at least 1/3 had experienced difficulty accessing oral contraceptive (OCs) in the past two years. The cost of contraceptives, the need to see a doctor and long waits for appointments were cited as barriers for not using OCs. The majority agreed they would discuss with their doctor the decision to buy the POP, consult about side effects and other reproductive health issues. Over 2/3 of pharmacists in each country would be very, or fairly, likely to recommend the POP, agreeing that the benefits included improved access for women, and offered them more independence. Asked directly, women in Germany, Spain and Italy currently using contraception are positive about a POP OTC. Pharmacists are also positive, with the overwhelming majority in favour of providing POPs.