cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19295609.v2
title: Data and code for the paper entitled as "Functional connections between bird eggshell stiffness and nest characteristics through risk of egg collision in nests"

description: Data and code for the paper entitled as "Functional connections between bird eggshell stiffness and nest characteristics through risk of egg collision in nests", which is accepted by Ecology Letters. This item includes four datasets and an R code used in the study. The four datasets are: <br> 1. All_trees.nex Phylogenetic trees downloaded from birdtree.org for 1866 avian species with eggshell data <br> 2. Consensus_tree.tre Consensus tree for 1850 avian species studied <br> 3. Nest_egg_data_v2.csv Dataset on the nest characters, eggshell C number and clutch size of the 1850 avian species studied; including the following columns: Species: species names used as the tip labels in the phylogenetic trees Order: order of the species Family: family of the species Species_IOC: Scientific names of the species used in the IOC World Bird List LongAxis_mm: length of the long axis of the egg in mm ShortAxis_mm: length of the short axis of the egg in mm AxisRatio: ratio of the long axis length to the short axis length Thickness_mm: thickness of the egg shell in mm Stiffness_N/mm: stiffness of the egg shell in N/mm C: C number of the species Site: category of nest site (A: Other; B: Tree; C: Non-tree vegetation) Structure: category of nest structure (A: Scrape/Platform; B: Cavity; C: Cup; D: Dome) Attachment: category of nest attachment (A: Basal; B: Lateral/Horizontal; C: Pensile) ClutchSize: clutch size of the species <br> 4. C_node_depth.csv Dataset on the C number values for the 1850 avian species and their ancestors estimated by BayesTrait; including the following columns: node: node IDs or tip labels in the consensus tree C: C number of the species or the ancestors node depth: branch length of the species or the ancestors in the consensus tree Passeriformes: passerine status (Y: passerine; N: non-passerine)
DOI: 10.5517/ccdc.csd.cc2d3gzz
title: CCDC 2207881: Experimental Crystal Structure Determination

description: Related Article: Gu Zhan, Hongli Zhao, Dong-Ai Li, Yuling Wu, Huaying Fang, Cheng Peng, Bo Han|2022|Tetrahedron Lett.|115|154295|doi:10.1016/j.tetlet.2022.154295
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dchjt
title: CCDC 2215586: Experimental Crystal Structure Determination

description: Related Article: Yuhua Ge, Xingyue Chen, Shah Nawaz Khan, Shuhe Jia, Gang Chen|2022|Tetrahedron Lett.|115|154315|doi:10.1016/j.tetlet.2022.154315
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ddzsl
title: CCDC 2217020: Experimental Crystal Structure Determination

description: Related Article: Yuhua Ge, Xingyue Chen, Shah Nawaz Khan, Shuhe Jia, Gang Chen|2022|Tetrahedron Lett.|115|154315|doi:10.1016/j.tetlet.2022.154315
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d52k7
title: CCDC 2209418: Experimental Crystal Structure Determination

description: Related Article: Roghayeh Azizi, Mojtaba Shamsipur, Avat (Arman) Taherpour, Afshin Pashabadi|2023|J.Mater.Chem.A|11|1491|doi:10.1039/D2TA08387F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d1kxy
title: CCDC 2206050: Experimental Crystal Structure Determination

description: Related Article: Yao Tan, Yan Lei|2023|Polyhedron|231|116270|doi:10.1016/j.poly.2022.116270
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dpwmm
title: CCDC 2225571: Experimental Crystal Structure Determination

description: Related Article: Parasar Kumar, Vikas D. Ghule, Srinivas Dharavath|2022|Dalton Trans.|52|747|doi:10.1039/D2DT03814E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dxwlt
title: CCDC 2232297: Experimental Crystal Structure Determination

description: Related Article: Constantin G. Daniliuc, Nina Kleigrewe, Roland Fröhlich, Gerhard Erker|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dxxjs
title: CCDC 2232326: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, J.D. Kennedy, M.J. Carr, A. Franken|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dxxkt
title: CCDC 2232327: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, J.D. Kennedy, M.J. Carr, D.E. Bryant|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dxxlv
title: CCDC 2232328: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, J.D. Kennedy, M.J. Carr, D.E. Bryant|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dxxmw
title: CCDC 2232329: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, J.D. Kennedy, M.J. Carr|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.19474316.v3
title: Fern Tree of Life (FTOL) input data

description: The data included here are used in a pipeline that (mostly) automatically generates a maximally sampled fern phylogenetic tree based on plastid sequences in GenBank (https://github.com/fernphy/ftol).<br> <br> The first step is to download the latest release of GenBank data from the NCBI GenBank FTP site (https://ftp.ncbi.nlm.nih.gov/genbank/) and use it to create a local database of fern sequences. This is done with custom R scripts contained in https://github.com/fernphy/ftol, in particular setup_gb.R (https://github.com/fernphy/ftol/blob/main/R/setup_gb.R).<br> <br> Next, a set of reference FASTA files for 79 target loci (one per locus; ref_aln.tar.gz) is generated. These include 77 protein-coding genes based on a list of 83 genes (Wei et al. 2017) that was filtered to only genes that show no evidence of duplication, plus two spacer regions (trnL-trnF and rps4-trnS). Each FASTA file in ref_aln.tar.gz includes one representative (longest) sequence per avaialable fern genus. This is done with prep_ref_seqs_plan.R (https://github.com/fernphy/ftol/blob/main/prep_ref_seqs_plan.R).<br> <br> Sequences matching the target loci are then extracted from each accession in the local database using the FASTA files contained in ref_aln.tar.gz as references with the “Reference_Blast_Extract.py” script of superCRUNCH (Portik and Wiens 2020).<br> <br> The extracted sequences are aligned with MAFFT (Katoh et al. 2002), phylogenetic analysis is done using IQ-TREE (Nguyen et al. 2015) and divergence times estimated with treePL (Smith and O’Meara 2012).<br> <br> For additional methodological details, see:<br> <br> Nitta JH, Schuettpelz E, Ramírez-Barahona S, Iwasaki W. 2022. An open and continuously updated fern tree of life. Frontiers in Plant Sciences 13 https://doi.org/10.3389/fpls.2022.909768.<br>
DOI: 10.5281/zenodo.7546121
title: Supplementary information for: "Solar control of the pickup ion plume in the dayside magnetosheath of Venus"

description: This is the time intervals we omitted.<br> Every two lines correspond a time interval.<br> Totally 266 intervals in the dataset.
DOI: 10.5281/zenodo.7546120
title: Supplementary information for: "Solar control of the pickup ion plume in the dayside magnetosheath of Venus"

description: This is the time intervals we omitted.<br> Every two lines correspond a time interval.<br> Totally 266 intervals in the dataset.
DOI: 10.6084/m9.figshare.21913689
title: Salmonella enterica pan-genome

description: Salmonella enterican pa-genome cdhit clustering files. After unzipping the tar.gz file there are two CD-HIT files, including the representative sequences and the clustering result.
DOI: 10.6084/m9.figshare.21913689.v1
title: Salmonella enterica pan-genome

description: Salmonella enterican pa-genome cdhit clustering files. After unzipping the tar.gz file there are two CD-HIT files, including the representative sequences and the clustering result.
DOI: 10.5517/ccdc.csd.cc26j4lh
title: CCDC 2041306: Experimental Crystal Structure Determination

description: Related Article: Dengxian Fu, Shuxin Zhang, Bingbing Xu, Peng Peng, Qian Wan, Jing Zeng|2022|J.Org.Chem.|88|727|doi:10.1021/acs.joc.2c02364
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26j4rn
title: CCDC 2041311: Experimental Crystal Structure Determination

description: Related Article: Dengxian Fu, Shuxin Zhang, Bingbing Xu, Peng Peng, Qian Wan, Jing Zeng|2022|J.Org.Chem.|88|727|doi:10.1021/acs.joc.2c02364
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26j51z
title: CCDC 2041320: Experimental Crystal Structure Determination

description: Related Article: Dengxian Fu, Shuxin Zhang, Bingbing Xu, Peng Peng, Qian Wan, Jing Zeng|2022|J.Org.Chem.|88|727|doi:10.1021/acs.joc.2c02364
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26llyc
title: CCDC 2043673: Experimental Crystal Structure Determination

description: Related Article: Dengxian Fu, Shuxin Zhang, Bingbing Xu, Peng Peng, Qian Wan, Jing Zeng|2022|J.Org.Chem.|88|727|doi:10.1021/acs.joc.2c02364
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26lm0g
title: CCDC 2043675: Experimental Crystal Structure Determination

description: Related Article: Dengxian Fu, Shuxin Zhang, Bingbing Xu, Peng Peng, Qian Wan, Jing Zeng|2022|J.Org.Chem.|88|727|doi:10.1021/acs.joc.2c02364
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26qg1g
title: CCDC 2047365: Experimental Crystal Structure Determination

description: Related Article: Rubén Prieto|2020|CSD Communication|||
description: Related Article: Rubén Prieto-Díaz, Manuel González-Gómez, Hugo Fojo-Carballo, Jhonny Azuaje, Abdelaziz El Maatougui, Maria Majellaro, María I. Loza, José Brea, Víctor Fernández-Dueñas, M. Rita Paleo, Alejandro Díaz-Holguín, Beatriz Garcia-Pinel, Ana Mallo-Abreu, Juan C. Estévez, Antonio Andújar-Arias, Xerardo García-Mera, Iria Gomez-Tourino, Francisco Ciruela, Cristian O. Salas, Hugo Gutiérrez-de-Terán, Eddy Sotelo|2022|J.Med.Chem.|66|890|doi:10.1021/acs.jmedchem.2c01768
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26rdlz
title: CCDC 2048281: Experimental Crystal Structure Determination

description: Related Article: Rubén Prieto|2020|CSD Communication|||
description: Related Article: Rubén Prieto-Díaz, Manuel González-Gómez, Hugo Fojo-Carballo, Jhonny Azuaje, Abdelaziz El Maatougui, Maria Majellaro, María I. Loza, José Brea, Víctor Fernández-Dueñas, M. Rita Paleo, Alejandro Díaz-Holguín, Beatriz Garcia-Pinel, Ana Mallo-Abreu, Juan C. Estévez, Antonio Andújar-Arias, Xerardo García-Mera, Iria Gomez-Tourino, Francisco Ciruela, Cristian O. Salas, Hugo Gutiérrez-de-Terán, Eddy Sotelo|2022|J.Med.Chem.|66|890|doi:10.1021/acs.jmedchem.2c01768
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27ff48
title: CCDC 2068479: Experimental Crystal Structure Determination

description: Related Article: Dengxian Fu, Shuxin Zhang, Bingbing Xu, Peng Peng, Qian Wan, Jing Zeng|2022|J.Org.Chem.|88|727|doi:10.1021/acs.joc.2c02364
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29lc1b
title: CCDC 2132801: Experimental Crystal Structure Determination

description: Related Article: Braj Gopal, Prasoon Raj Singh, Madan Kumar, Avijit Goswami|2022|J.Org.Chem.|88|132|doi:10.1021/acs.joc.2c01990
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b730q
title: CCDC 2151772: Experimental Crystal Structure Determination

description: Related Article: Tarun Kumar Dinda, Prasenjit Mal|2022|J.Org.Chem.|88|573|doi:10.1021/acs.joc.2c02595
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bl0pn
title: CCDC 2162271: Experimental Crystal Structure Determination

description: Related Article: Lidong Shan, Hongchen Li, Weiping Zheng, Xingyong Wang, Xinyan Wang, Yuefei Hu|2022|J.Org.Chem.|88|525|doi:10.1021/acs.joc.2c02504
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bm0zz
title: CCDC 2163241: Experimental Crystal Structure Determination

description: Related Article: Lidong Shan, Hongchen Li, Weiping Zheng, Xingyong Wang, Xinyan Wang, Yuefei Hu|2022|J.Org.Chem.|88|525|doi:10.1021/acs.joc.2c02504
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7545983
title: Supplemental Material: Laboratory Packages for Human– Oriented Experiments in Software Engineering: An ACM Badging Approach

description: This laboratory package contains supplemental material from the study: "Laboratory Packages for Human–Oriented Experiments in Software Engineering: An ACM Badging Approach". The supplementary material contains:<br> 1. The list of the 118 primary studies (Labpacks) classified by journals and conferences.<br> 2. The .xlsx file of the dataset used to analyze the RQs.<br> 3. The list of figures published in the scientific article.
DOI: 10.5281/zenodo.7545984
title: Supplemental Material: Laboratory Packages for Human– Oriented Experiments in Software Engineering: An ACM Badging Approach

description: This laboratory package contains supplemental material from the study: "Laboratory Packages for Human–Oriented Experiments in Software Engineering: An ACM Badging Approach". The supplementary material contains:<br> 1. The list of the 118 primary studies (Labpacks) classified by journals and conferences.<br> 2. The .xlsx file of the dataset used to analyze the RQs.<br> 3. The list of figures published in the scientific article.
DOI: 10.5281/zenodo.7261554
title: Replication Data for "How Closely are Common Mutation Operators Coupled to Real Faults?"

description: # Replication Data for "How Closely are Common Mutation Operators Coupled to Real Faults?" ## Overview In mutation testing, faulty versions of a program are generated through automated modifications of source code. These mutants are used to assess and improve test suite quality, under the assumption that detection of mutants is indicative of a test suite's ability to detect real faults - i.e., that mutants and faults have a semantic relationship. Improving the effectiveness - in both cost and quality - of mutation testing may lie in better understanding this relationship, in particular with regard to how individual mutation operators (types) couple to real faults. In this study, we examine coupling between 32,002 mutants produced by 31 mutation operators and 144 real faults, using a scale based on number of failing tests and reasons for failure. Ultimately, we observed that 9.92% of the mutants are strongly coupled to real faults, and 51.03% of the faults have at least one strongly coupled mutant. We identify and examine mutation operators with the highest median coupling, as well as the operators that tend to produce non-compiling mutants, undetected mutants, and mutants that cause the most tests to fail outside of the tests that detect the actual fault. We also examine how coupling could be used to filter the set of operators employed, leading to potentially significant cost savings during mutation testing. Our findings could lead to improvements in how mutation testing is applied, improved implementation of specific mutation operators, and inspiration for new mutation operators. ## Data Contained in This Package - mutant_data.csv This dataset contains the coupling results for all mutants considered in our experiments. It contains the following attributes for each mutant: -- Project name from Defects4J<br> -- Fault number from Defects4J<br> -- Mutation ID<br> -- Mutation operator<br> -- Number of trigger tests for the fault (tests that detect the real fault)<br> -- Number of failing test cases for the mutant (-1 indicates a compilation error)<br> -- The number of failing trigger tests for the mutant<br> -- The number of trigger tests that fail for the same reason the tests failed for the real fault.<br> -- The number of failing non-trigger tests.<br> -- The categorization of coupling. In order: Compile Error, Not Detected, No Substitution, Partial Test Substitution + Additional Tests Fail, Partial Test Substitution, Partial Substitution + Additional Tests Fail, Partial Substitution, Test Substitution + Additional Tests Fail, Test Substitution, Strong Substitution + Additional Tests Fail, Strong Substitution. - mutant_logs/{Project}/{Project}{Fault Number}output.txt The raw output log that resulted from executing test cases for each mutant for each case example used from Defects4J. Used to generate the dataset discussed above. Scripting for generating the dataset is also included.