cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3515906
title: Appendix C. Proportion of variation in abundance and diversity of native and exotic plants and log ratios of native to exotic abundance and diversity accounted for by nested spatial (block) and temporal (year) variables.

description: Proportion of variation in abundance and diversity of native and exotic plants and log ratios of native to exotic abundance and diversity accounted for by nested spatial (block) and temporal (year) variables.
DOI: 10.6084/m9.figshare.3515906.v1
title: Appendix C. Proportion of variation in abundance and diversity of native and exotic plants and log ratios of native to exotic abundance and diversity accounted for by nested spatial (block) and temporal (year) variables.

description: Proportion of variation in abundance and diversity of native and exotic plants and log ratios of native to exotic abundance and diversity accounted for by nested spatial (block) and temporal (year) variables.
DOI: 10.6084/m9.figshare.3515903
title: Appendix A. Effect of nutrient additions on soil organic matter concentration.

description: Effect of nutrient additions on soil organic matter concentration.
DOI: 10.6084/m9.figshare.3515903.v1
title: Appendix A. Effect of nutrient additions on soil organic matter concentration.

description: Effect of nutrient additions on soil organic matter concentration.
DOI: 10.6084/m9.figshare.3515900
title: Appendix B. Effect of nutrient additions on soil pH.

description: Effect of nutrient additions on soil pH.
DOI: 10.6084/m9.figshare.3515900.v1
title: Appendix B. Effect of nutrient additions on soil pH.

description: Effect of nutrient additions on soil pH.
DOI: 10.6084/m9.figshare.3515897
title: Appendix C. Effect of nutrient additions on soil extractable inorganic N and P concentrations from inter-plant spaces and from under Larrea tridentata.

description: Effect of nutrient additions on soil extractable inorganic N and P concentrations from inter-plant spaces and from under Larrea tridentata.
DOI: 10.6084/m9.figshare.3515897.v1
title: Appendix C. Effect of nutrient additions on soil extractable inorganic N and P concentrations from inter-plant spaces and from under Larrea tridentata.

description: Effect of nutrient additions on soil extractable inorganic N and P concentrations from inter-plant spaces and from under Larrea tridentata.
DOI: 10.6084/m9.figshare.3515891
title: Appendix D. Effect of nutrient additions on net potential N mineralization and nitrification.

description: Effect of nutrient additions on net potential N mineralization and nitrification.
DOI: 10.6084/m9.figshare.3515891.v1
title: Appendix D. Effect of nutrient additions on net potential N mineralization and nitrification.

description: Effect of nutrient additions on net potential N mineralization and nitrification.
DOI: 10.6084/m9.figshare.3515888
title: Appendix E. Effect of nutrient additions on foliar N and P concentrations of Pectocarya spp.

description: Effect of nutrient additions on foliar N and P concentrations of Pectocarya spp.
DOI: 10.6084/m9.figshare.3515888.v1
title: Appendix E. Effect of nutrient additions on foliar N and P concentrations of Pectocarya spp.

description: Effect of nutrient additions on foliar N and P concentrations of Pectocarya spp.
DOI: 10.6084/m9.figshare.3515885
title: Appendix A. Computations of carbon, nitrogen, and phosphorus fluxes in the household flux calculator (HFC) model.

description: Computations of carbon, nitrogen, and phosphorus fluxes in the household flux calculator (HFC) model.
DOI: 10.6084/m9.figshare.3515885.v1
title: Appendix A. Computations of carbon, nitrogen, and phosphorus fluxes in the household flux calculator (HFC) model.

description: Computations of carbon, nitrogen, and phosphorus fluxes in the household flux calculator (HFC) model.
DOI: 10.6084/m9.figshare.3515882
title: Appendix B. Input flux distribution characteristics of total and major components of carbon, nitrogen, and phosphorus.

description: Input flux distribution characteristics of total and major components of carbon, nitrogen, and phosphorus.
DOI: 10.6084/m9.figshare.3515882.v1
title: Appendix B. Input flux distribution characteristics of total and major components of carbon, nitrogen, and phosphorus.

description: Input flux distribution characteristics of total and major components of carbon, nitrogen, and phosphorus.
DOI: 10.6084/m9.figshare.3515879
title: Appendix A. Raw data and revised density-dependent functions for rosette survivorship and adult fertility.

description: Raw data and revised density-dependent functions for rosette survivorship and adult fertility.
DOI: 10.6084/m9.figshare.3515879.v1
title: Appendix A. Raw data and revised density-dependent functions for rosette survivorship and adult fertility.

description: Raw data and revised density-dependent functions for rosette survivorship and adult fertility.
DOI: 10.6084/m9.figshare.3515876
title: Appendix B. Corrections to garlic mustard SRA model.

description: Corrections to garlic mustard SRA model.
DOI: 10.6084/m9.figshare.3515876.v1
title: Appendix B. Corrections to garlic mustard SRA model.

description: Corrections to garlic mustard SRA model.
DOI: 10.6084/m9.figshare.3515873
title: Supplement 1. R code for the SRA population model for Alliaria petiolata described in this paper.

description: File List SRARevisedModel.r – R code Description The text file SRARevisedModel.r contains a program file that can be executed in R. The script runs the original and corrected population models for <i>Alliaria petiolata</i> (garlic mustard) described in this paper. The script initializes a figure, defines variables used to iterate the model, defines constant variables, and defines alternate density-dependent survivorship functions. Note the variable inc is set to 0.001 by default but it can be changed to a larger value (0.01 or 0.05) to make the model run faster and produce lower resolution results figures. The script then iterates the original population model (original statistical functions, original implementation of density-dependent winter survivorship), the approximation population model (revised statistical functions, original implementation of density-dependent winter survivorship), and the realistic population model (revised statistical functions, revised implementation of density-dependent winter survivorship). All models include a correction to the effect of adult management on rosette survivorship, which is always shown in the third column of the 9-panel figure. The code will produce the 9-panel figure shown in Appendix B. To save the figure to the local directory, uncomment the following line: # savePlot('SRAModel_9Panel.png',type='png' The final section of code in the script can be uncommented and used to produce a time series and phase plot diagram of the corrected SRA population model.
DOI: 10.6084/m9.figshare.3515873.v1
title: Supplement 1. R code for the SRA population model for Alliaria petiolata described in this paper.

description: File List SRARevisedModel.r – R code Description The text file SRARevisedModel.r contains a program file that can be executed in R. The script runs the original and corrected population models for <i>Alliaria petiolata</i> (garlic mustard) described in this paper. The script initializes a figure, defines variables used to iterate the model, defines constant variables, and defines alternate density-dependent survivorship functions. Note the variable inc is set to 0.001 by default but it can be changed to a larger value (0.01 or 0.05) to make the model run faster and produce lower resolution results figures. The script then iterates the original population model (original statistical functions, original implementation of density-dependent winter survivorship), the approximation population model (revised statistical functions, original implementation of density-dependent winter survivorship), and the realistic population model (revised statistical functions, revised implementation of density-dependent winter survivorship). All models include a correction to the effect of adult management on rosette survivorship, which is always shown in the third column of the 9-panel figure. The code will produce the 9-panel figure shown in Appendix B. To save the figure to the local directory, uncomment the following line: # savePlot('SRAModel_9Panel.png',type='png' The final section of code in the script can be uncommented and used to produce a time series and phase plot diagram of the corrected SRA population model.
DOI: 10.6084/m9.figshare.3515870
title: Appendix A. Sequence of model modifications.

description: Sequence of model modifications.
DOI: 10.6084/m9.figshare.3515870.v1
title: Appendix A. Sequence of model modifications.

description: Sequence of model modifications.
DOI: 10.6084/m9.figshare.3515867
title: Appendix B. Collinearity and parameter bias.

description: Collinearity and parameter bias.
DOI: 10.6084/m9.figshare.3515864
title: Appendix C. Winter density dependence.

description: Winter density dependence.
DOI: 10.6084/m9.figshare.3515864.v1
title: Appendix C. Winter density dependence.

description: Winter density dependence.
DOI: 10.6084/m9.figshare.3515861
title: Appendix D. Sensitivity of model predictions to parameter estimates.

description: Sensitivity of model predictions to parameter estimates.
DOI: 10.6084/m9.figshare.3515861.v1
title: Appendix D. Sensitivity of model predictions to parameter estimates.

description: Sensitivity of model predictions to parameter estimates.
DOI: 10.6084/m9.figshare.3515858
title: Supplement 1. MATLAB simulation.

description: File List Evans_Collinearity_Supplement.m read me.txt Description The MATLAB script Evans_Collinearity_Supplement.m generates two random normal variables <i>x</i> and <i>y</i> with the correlation between them specified by the user. It then creates a third ‘response’ variable <i>z</i> that is a function of <i>x</i> and <i>y</i>. The exact function used to create <i>z</i> can be chosen by the user. Finally, it runs a set of linear regressions of <i>z</i> vs. various combinations of <i>x</i>, <i>y</i>, and their interactions. The regressions are used to demonstrate how using <i>P</i> values to select variables in a regression model can lead to retaining falsely significant parameters, resulting in an incorrect interpretation of the data. Model selection using Akaike’s ‘An Information Criterion’ (AIC) is illustrated as an alternative method. More complete details are given in Appendix B and in the comments of the file itself.
DOI: 10.6084/m9.figshare.3515858.v1
title: Supplement 1. MATLAB simulation.

description: File List Evans_Collinearity_Supplement.m read me.txt Description The MATLAB script Evans_Collinearity_Supplement.m generates two random normal variables <i>x</i> and <i>y</i> with the correlation between them specified by the user. It then creates a third ‘response’ variable <i>z</i> that is a function of <i>x</i> and <i>y</i>. The exact function used to create <i>z</i> can be chosen by the user. Finally, it runs a set of linear regressions of <i>z</i> vs. various combinations of <i>x</i>, <i>y</i>, and their interactions. The regressions are used to demonstrate how using <i>P</i> values to select variables in a regression model can lead to retaining falsely significant parameters, resulting in an incorrect interpretation of the data. Model selection using Akaike’s ‘An Information Criterion’ (AIC) is illustrated as an alternative method. More complete details are given in Appendix B and in the comments of the file itself.
DOI: 10.6084/m9.figshare.3515855
title: Appendix A. Setup of sample sites during 2008 and 2009, and example of tracking stations used to obtain mammal footprints.

description: Setup of sample sites during 2008 and 2009, and example of tracking stations used to obtain mammal footprints.
DOI: 10.6084/m9.figshare.3515855.v1
title: Appendix A. Setup of sample sites during 2008 and 2009, and example of tracking stations used to obtain mammal footprints.

description: Setup of sample sites during 2008 and 2009, and example of tracking stations used to obtain mammal footprints.
DOI: 10.6084/m9.figshare.3515852
title: Appendix B. Reproductive rate, average body size, and mean home range area of mammal species used in this study.

description: Reproductive rate, average body size, and mean home range area of mammal species used in this study.
DOI: 10.6084/m9.figshare.3515852.v1
title: Appendix B. Reproductive rate, average body size, and mean home range area of mammal species used in this study.

description: Reproductive rate, average body size, and mean home range area of mammal species used in this study.
DOI: 10.6084/m9.figshare.3515849
title: Appendix C. Raw relative abundance data for the 17 mammal species tracked during 2005, 2008, and 2009, and road density values.

description: Raw relative abundance data for the 17 mammal species tracked during 2005, 2008, and 2009, and road density values.
DOI: 10.6084/m9.figshare.3515849.v1
title: Appendix C. Raw relative abundance data for the 17 mammal species tracked during 2005, 2008, and 2009, and road density values.

description: Raw relative abundance data for the 17 mammal species tracked during 2005, 2008, and 2009, and road density values.
DOI: 10.6084/m9.figshare.3515846
title: Appendix D. Correlations between habitat variables and road density for each sampling year.

description: Correlations between habitat variables and road density for each sampling year.
DOI: 10.6084/m9.figshare.3515846.v1
title: Appendix D. Correlations between habitat variables and road density for each sampling year.

description: Correlations between habitat variables and road density for each sampling year.
DOI: 10.6084/m9.figshare.3515843
title: Appendix E. Detection probability analysis results.

description: Detection probability analysis results.
DOI: 10.6084/m9.figshare.3515843.v1
title: Appendix E. Detection probability analysis results.

description: Detection probability analysis results.
DOI: 10.6084/m9.figshare.3515840
title: Appendix F. Model summaries and parameter estimates from the linear regressions of relative abundance on road density.

description: Model summaries and parameter estimates from the linear regressions of relative abundance on road density.
DOI: 10.6084/m9.figshare.3515840.v1
title: Appendix F. Model summaries and parameter estimates from the linear regressions of relative abundance on road density.

description: Model summaries and parameter estimates from the linear regressions of relative abundance on road density.
DOI: 10.6084/m9.figshare.3515837
title: Appendix G. Linear regression of the log-transformed standardized coefficient (response variable) from single-species regressions of standardized relative abundance on standardized road density for 16 mammal species on the log-transformed predictor variables (i.e., reproductive rate, home range area, and average body size).

description: Linear regression of the log-transformed standardized coefficient (response variable) from single-species regressions of standardized relative abundance on standardized road density for 16 mammal species on the log-transformed predictor variables (i.e., reproductive rate, home range area, and average body size).
DOI: 10.6084/m9.figshare.3515837.v1
title: Appendix G. Linear regression of the log-transformed standardized coefficient (response variable) from single-species regressions of standardized relative abundance on standardized road density for 16 mammal species on the log-transformed predictor variables (i.e., reproductive rate, home range area, and average body size).

description: Linear regression of the log-transformed standardized coefficient (response variable) from single-species regressions of standardized relative abundance on standardized road density for 16 mammal species on the log-transformed predictor variables (i.e., reproductive rate, home range area, and average body size).
DOI: 10.6084/m9.figshare.3515834
title: Appendix A. Details concerning the multi-event capture–recapture modeling approach and its implementation in program E-SURGE.

description: Details concerning the multi-event capture–recapture modeling approach and its implementation in program E-SURGE.
DOI: 10.6084/m9.figshare.3515834.v1
title: Appendix A. Details concerning the multi-event capture–recapture modeling approach and its implementation in program E-SURGE.

description: Details concerning the multi-event capture–recapture modeling approach and its implementation in program E-SURGE.
DOI: 10.6084/m9.figshare.3515831
title: Appendix A. List of bird species observed at the 78 study sites at the Simon Newman Ranch, California between 2001 and 2006.

description: List of bird species observed at the 78 study sites at the Simon Newman Ranch, California between 2001 and 2006.
DOI: 10.6084/m9.figshare.3515828
title: Appendix A. A table showing ecologically important species on farms defined by the roles they play in the network.

description: A table showing ecologically important species on farms defined by the roles they play in the network.
DOI: 10.6084/m9.figshare.3515831.v1
title: Appendix A. List of bird species observed at the 78 study sites at the Simon Newman Ranch, California between 2001 and 2006.

description: List of bird species observed at the 78 study sites at the Simon Newman Ranch, California between 2001 and 2006.
DOI: 10.6084/m9.figshare.3515828.v1
title: Appendix A. A table showing ecologically important species on farms defined by the roles they play in the network.

description: A table showing ecologically important species on farms defined by the roles they play in the network.
DOI: 10.6084/m9.figshare.3515825
title: Appendix A. Dendrogram created by hierarchical cluster analysis using soil variables.

description: Dendrogram created by hierarchical cluster analysis using soil variables.
DOI: 10.6084/m9.figshare.3515825.v1
title: Appendix A. Dendrogram created by hierarchical cluster analysis using soil variables.

description: Dendrogram created by hierarchical cluster analysis using soil variables.
DOI: 10.6084/m9.figshare.3515822
title: Appendix B. Species composition and importance values for each site by soil group.

description: Species composition and importance values for each site by soil group.
DOI: 10.6084/m9.figshare.3515822.v1
title: Appendix B. Species composition and importance values for each site by soil group.

description: Species composition and importance values for each site by soil group.
DOI: 10.6084/m9.figshare.3515819
title: Appendix A. A figure showing the location of sampling units within each treatment.

description: A figure showing the location of sampling units within each treatment.
DOI: 10.6084/m9.figshare.3515819.v1
title: Appendix A. A figure showing the location of sampling units within each treatment.

description: A figure showing the location of sampling units within each treatment.
DOI: 10.6084/m9.figshare.3515816
title: Appendix B. A table showing observed mean cover, constancy, and required sample size for each sampling design, and time-to-sample estimates for grouped vegetation variables and for individual species.

description: A table showing observed mean cover, constancy, and required sample size for each sampling design, and time-to-sample estimates for grouped vegetation variables and for individual species.
DOI: 10.6084/m9.figshare.3515816.v1
title: Appendix B. A table showing observed mean cover, constancy, and required sample size for each sampling design, and time-to-sample estimates for grouped vegetation variables and for individual species.

description: A table showing observed mean cover, constancy, and required sample size for each sampling design, and time-to-sample estimates for grouped vegetation variables and for individual species.
DOI: 10.6084/m9.figshare.3515813
title: Appendix C. Proof of unbiasedness of the Strip Adaptive Cluster Sampling (SACS) Estimator.

description: Proof of unbiasedness of the Strip Adaptive Cluster Sampling (SACS) Estimator.
DOI: 10.6084/m9.figshare.3515813.v1
title: Appendix C. Proof of unbiasedness of the Strip Adaptive Cluster Sampling (SACS) Estimator.

description: Proof of unbiasedness of the Strip Adaptive Cluster Sampling (SACS) Estimator.
DOI: 10.6084/m9.figshare.3515810
title: Appendix A. Mean horizontal cover and the percentage of quadrats in which a taxon is present for each taxon inventoried on Anticosti Island seven years after seed-tree group cutting, as a function of the intensity of site preparation and the presence or absence of a fence preventing deer browsing.

description: Mean horizontal cover and the percentage of quadrats in which a taxon is present for each taxon inventoried on Anticosti Island seven years after seed-tree group cutting, as a function of the intensity of site preparation and the presence or absence of a fence preventing deer browsing.
DOI: 10.6084/m9.figshare.3515810.v1
title: Appendix A. Mean horizontal cover and the percentage of quadrats in which a taxon is present for each taxon inventoried on Anticosti Island seven years after seed-tree group cutting, as a function of the intensity of site preparation and the presence or absence of a fence preventing deer browsing.

description: Mean horizontal cover and the percentage of quadrats in which a taxon is present for each taxon inventoried on Anticosti Island seven years after seed-tree group cutting, as a function of the intensity of site preparation and the presence or absence of a fence preventing deer browsing.
DOI: 10.6084/m9.figshare.3515807
title: Appendix B. Mean values of cumulative richness, quadrat richness, Sørensen Floristic Similarity Index, and horizontal cover for each treatment combination of fencing and soil disturbance intensity by plant groups.

description: Mean values of cumulative richness, quadrat richness, Sørensen Floristic Similarity Index, and horizontal cover for each treatment combination of fencing and soil disturbance intensity by plant groups.
DOI: 10.6084/m9.figshare.3515807.v1
title: Appendix B. Mean values of cumulative richness, quadrat richness, Sørensen Floristic Similarity Index, and horizontal cover for each treatment combination of fencing and soil disturbance intensity by plant groups.

description: Mean values of cumulative richness, quadrat richness, Sørensen Floristic Similarity Index, and horizontal cover for each treatment combination of fencing and soil disturbance intensity by plant groups.
DOI: 10.6084/m9.figshare.3515804
title: Appendix C. Spearman rank correlations between the abundance of each herbaceous taxon and the abundance of dominant browsing-tolerant taxa as a function of the presence or absence of a fence preventing deer browsing.

description: Spearman rank correlations between the abundance of each herbaceous taxon and the abundance of dominant browsing-tolerant taxa as a function of the presence or absence of a fence preventing deer browsing.
DOI: 10.6084/m9.figshare.3515804.v1
title: Appendix C. Spearman rank correlations between the abundance of each herbaceous taxon and the abundance of dominant browsing-tolerant taxa as a function of the presence or absence of a fence preventing deer browsing.

description: Spearman rank correlations between the abundance of each herbaceous taxon and the abundance of dominant browsing-tolerant taxa as a function of the presence or absence of a fence preventing deer browsing.
DOI: 10.6084/m9.figshare.3515801
title: Appendix A. Distributions and densities of oysters and limpets on seawalls in July 2008.

description: Distributions and densities of oysters and limpets on seawalls in July 2008.
DOI: 10.6084/m9.figshare.3515801.v1
title: Appendix A. Distributions and densities of oysters and limpets on seawalls in July 2008.

description: Distributions and densities of oysters and limpets on seawalls in July 2008.
DOI: 10.6084/m9.figshare.3515798
title: Appendix B. Survival of Patelloida in experiment 2.

description: Survival of Patelloida in experiment 2.
DOI: 10.6084/m9.figshare.3515798.v1
title: Appendix B. Survival of Patelloida in experiment 2.

description: Survival of Patelloida in experiment 2.