cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.6jt0n/2
title: Culot_etal_MEE_quantity

description: This data file contains the data used to determine the extrapolated number of seeds dispersed by both species of tamarins (Saguinus nigrifrons and Saguinus fuscicollis), corresponding to the quantity component of seed dispersal effectiveness (SDE). These data were used to build the SDE landscape.
DOI: 10.5061/dryad.4k078/1
title: Dipnoi tree

description: The single favoured MPT from Lloyd et al., 2012.
DOI: 10.5061/dryad.4k078/2
title: Dipnoi ages

description: Upper and lower bounds from the first appearance for the taxa in the tree contained in Dipnoi.tre.
DOI: 10.5061/dryad.4k078/3
title: Asaphidae trees

description: All 162 MPTs of the trilobite Family Asaphidae from Bell and Braddy, 2012.
DOI: 10.5061/dryad.4k078/4
title: Asaphidae stratigraphic ranges

description: First and last appearance datums for all species within the Asaphidae.tre file.
DOI: 10.5061/dryad.4k078/5
title: Bell and Lloyd - Strap tutorial

description: Tutorial describing usage of main functions of strap (v 1.4) package for R.
DOI: 10.5061/dryad.7tq20/1
title: supplmentaryscript

description: TNT script for introduction of random absences and assessment of effect on taxon placement. Also includes TNT script used to generate simulated datasets.
DOI: 10.5061/dryad.3mj3m/1
title: Saxer_et_al_PlosGen_CarbohydrateData

description: Data from carbohydrate analyses of cell extract and spend media from E. coli RU1 ancestor and E. coli RU1-BHI evolved populations
DOI: 10.5061/dryad.3mj3m/2
title: Saxer_et_al_PlosGen_pH

description: pH of stationary phase cultures of the ancestor and evolved populations of E. coli RU1 and C. freundii RU2 in LB and BHI (in their selective media)
DOI: 10.5061/dryad.kd07t/1
title: Fecundity measures for two generations of inbreeding/outbreeding in the common bed bug

description: This file contains fecundity measures for two generations of inbreeding and outbreeding in the common bed bug. The file gives multiple measures per female. line = focal female, female/male.pop and .line = origin of parents as outlined in manuscript. Abbreviated names: S1 = Lab stock, 4S = mixed stock, F4 = field UK, K12 = field Kenya. Parent pop and line information are not given in outbred g2 individuals as they are no longer meaningful here (see manuscript) Parents size is given in (f.pronotum/m.pronotum), week = time point where eggs were collected, fertile = Number of fertile eggs, infertile = Number of Infertile eggs, total = Total number of eggs. Egg.size is given in mm and measured as length of egg.
DOI: 10.5061/dryad.kd07t/2
title: Offspring survival after starvation after one generation of inbreeding and outbreeding in the common bed bug

description: This file contains survival of adult offspring after one generation of inbreeding and outbreeding in the common bed bug. Individuals were starved and their survival recorded. line = focal mother, female/male.pop and .line = origin of parents as outlined in manuscript. Abbreviated names: S1 = Lab stock, 4S = mixed stock, F4 = field UK, K12 = field Kenya. Parents size is given in (f.pronotum/m.pronotum), sex = gender of offspring, event: 1 = death, 0 = survived, time = day of sampling. Sampling was stopped at day 70.
DOI: 10.5061/dryad.kd07t/3
title: Offspring survival after starvation after two generations of inbreeding and outbreeding in the common bed bug

description: This file contains survival of adult offspring after two generations of inbreeding and outbreeding in the common bed bug. line = focal mother, female/male.pop and .line = origin of parents as outlined in manuscript. Abbreviated names: S1 = Lab stock, 4S = mixed stock, F4 = field UK, K12 = field Kenya. Parent pop and line information are not given in outbred individuals as they are no longer meaningful here (see manuscript). Parents size is given in (f.pronotum/m.pronotum), sex = gender of offspring, event = 1 = death, 0 = survived, time = day of sampling. Sampling was stopped at day 70.
DOI: 10.5061/dryad.kd07t/4
title: Offspring body size after two generations of inbreeding and outbreeding in the common bed bug

description: This file contains body size measures (pronotum width) for adult offspring after one or two generations of inbreeding and outbreeding in the common bed bug. The file gives multiple measures per female. line = focal female (mother), female/male.pop and .line = origin of parents as outlined in manuscript. Abbreviated names: S1 = Lab stock, 4S = mixed stock, F4 = field UK, K12 = field Kenya. Parent pop and line information are not given in outbred g2 individuals as they are no longer meaningful here (see manuscript) Parents size is given in (f.pronotum/m.pronotum), female.off = female offspring size, male.off = male offspring size. There are multiple offspring measured for each mother.
DOI: 10.5061/dryad.3mj3m/3
title: Saxer_et_al_PlosGen_MigrationData

description: Migration data of single colonies isolated from the populations of E. coli and C. freundii evolved in LB and BHI
DOI: 10.5061/dryad.3mj3m/4
title: Saxer_et_al_PlosGen_GrowthOD600_BHI

description: OD readings of E. coli and C. freundii populations evolved in  BHI over the course of a growth cycle in BHI
DOI: 10.5061/dryad.3mj3m/5
title: Saxer_et_al_PlosGen_GrowthOD600_LB

description: OD readings of LB-evolved populations of E. coli and C. freundii in LB with the respective ancestors
DOI: 10.5061/dryad.3mj3m/7
title: Saxer_et_al_PlosGen_PopulationKey_corrected

description: This files contains the name of all the populations and ancestors, their selection regime and the accession number for the genomic and proteomics data, if applicable.
DOI: 10.5061/dryad.j56n4/1
title: Main Figures Data

description: Raw data of Period and events of activity for main figures
DOI: 10.5061/dryad.j56n4/2
title: Supplementary Figures S4 and S5

description: Raw Data for Per2::Luc bioluminescence
DOI: 10.5061/dryad.j56n4/3
title: Supplementary Figures S1, S3 and S7

description: Period data for supplementary figures S1 S3 S7
DOI: 10.5061/dryad.79qd9/1
title: California sheephead size, sex, and diet data from southern California

description: This is a data set of California sheephead size, sex, condition, stable isotope, and gut content data collected from 7 islands and 2 mainland locations in southern California from 2007-2008.
DOI: 10.5061/dryad.8p984/1
title: 88 assembled whole genome sequences from Campylobacter jejuni and Campylobacter coli isolated from grey seals (Halichoerus grypus)

description: 88 assembled whole genome sequences from Campylobacter jejuni and Campylobacter coli isolated from grey seals (Halichoerus grypus). Please refer to the full text publication for full description.
DOI: 10.5061/dryad.8p984/2
title: Core genome alignment for isolates used in this study

description: Multi-FASTA file of core genes concatenated and aligned using MUSCLE, from Campylobacter coli and C. jejuni isolates used and sequenced in this study.
DOI: 10.5061/dryad.8p984/3
title: Additional histopathology and immunohistochemistry figures

description: Additional information about those is available from corresponding authors on request.
DOI: 10.5061/dryad.8p984/4
title: Seal data associated with bacterial isolation

description: Detailed data about animal hosts from which strains sequenced in this study were isolated (animal weight, length to tail, sex, GPS location of isolation, date of isolation).
DOI: 10.5061/dryad.8p984/5
title: Seal data associated with bacterial isolation (updated)

description: Isolation information for strains of which genomes are available in Dryad accession: doi:10.5061/dryad.8p984
DOI: 10.5061/dryad.pp37p/1
title: MARK Occupancy Analysis Input File

description: This file contains the site-specific covariates and capture histories for the 34 occupancy-modeled species. Each row contains a capture history for a species at a site along with that site's model covariates, including era, region, slope, elevation, elevation squared, T100 (number of traps x 100), and logT (log of the number of traps). There are also two columns for latitude ("lat") and longitude ("long"), but these were not used in the occupancy analysis. This file is formatted as it was used in the MARK analysis.
DOI: 10.5061/dryad.911p1/1
title: Data_PRSB_RMB_etal

description: Data associated with 'You are what you eat: diet-induced chemical camouflage in a coral feeding reef fish'
DOI: 10.5061/dryad.h8m2q/1
title: Data set_Proceedings

description: Data set describing female attractiveness (i.e. number of males) with respect to feeding treatment.
DOI: 10.5061/dryad.p5s65/1
title: RogersandOtt-alldata

description: Grayscale pixel intensity values for each serotonergic neuron in the three thoracic ganglia of desert locusts that are either in the solitarious phase; subjected to a brief period of gregarising stimuli (either being crowded with other locusts, stroked on the hind leg or subjected to the sight and smell of other locusts); or have been in the gregarious phase for many generations. The cells occur in left-right pairs and each data-point is an average of left and right values.
DOI: 10.5061/dryad.c3j42/1
title: Landmark coordinates

description: landmark coordinates and voucher numbers
DOI: 10.5061/dryad.r5cq0.2
title: Data from: Phylotranscriptomics: saturated third codon positions radically influence the estimation of trees based on next-gen data
DOI: 10.5061/dryad.r5cq0.2/1.2
title: Breinholt_Kawahara_2013_nuc

description: Nexus file containing 938 genes for 19 taxa. See Taxon_list.txt for names of each taxon, this is a nucleotide nexus file with a CHARSET that defines each gene. Gene names correspond to gene numbers in the Insecta HMMER v3-2 core ortholog database. For further information on these genes see Supplementary Table 2 from Breinholt and Kawahara 2013.
DOI: 10.5061/dryad.r5cq0.2/2.2
title: Breinholt_Kawahara_2013_aa.nex

description: Nexus file containing 938 genes for 19 taxa. See taxa_list.txt for names of each taxon, this is a amino acid nexus file with a CHARSET that defines each gene. Gene names correspond to gene numbers in the Insecta HMMER v3-2 core ortholog database. For further information on these genes see Supplementary Table 2 from Breinholt and Kawahara 2013.
DOI: 10.5061/dryad.r5cq0.2/3.2
title: Taxon_list.txt

description: List of taxa codes and names and source of data for the two nexus files below in tab-delimited text.
DOI: 10.5061/dryad.r5cq0.2/4.2
title: acti2_assembly.fasta

description: Assembly of Actias luna from Genbank SRA accession #SRR1002974, using multiple kmers (13,23,33,43,63) with SOAPdenovo-Trans v1.01. Different Kmer assemblies were combined with cd-hit-est and processed with the fastx toolkit. See SOAP_assembly.qsub for the command used for this assembly.
DOI: 10.5061/dryad.r5cq0.2/5.2
title: attac_assembly.fasta

description: Assembly of Attacus atlas from Genbank SRA accession #SRR1002994, using multiple kmers (13,23,33,43,63) with SOAPdenovo-Trans v1.01. Different Kmer assemblies were combined with cd-hit-est and processed with the fastx toolkit. See SOAP_assembly.qsub for the command used for this assembly.
DOI: 10.5061/dryad.r5cq0.1
title: Data from: Phylotranscriptomics: saturated third codon positions radically influence the estimation of trees based on next-gen data
DOI: 10.5061/dryad.r5cq0.2/10.2
title: SOAP_assembly.qsub

description: This script was used for multiple kmer transcriptome assemblies. The script is specific to the University of Florida module system but can be easily edited for use on other HPC systems.
DOI: 10.5061/dryad.r5cq0.2/11.2
title: HaMStR.qsub

description: This script contains commands used for HaMStR ortholog prediction. It is specific to HPC systems with PBS schedulers and requires the set of files and directories detailed in the HaMStR manual.
DOI: 10.5061/dryad.r5cq0.2/12.2
title: README.txt

description: This file contains descriptions of all the files associated with this Dryad package.
DOI: 10.5061/dryad.r5cq0.2/6.2
title: cundu3_assembly.fasta

description: Assembly of Ceratomia undulosa from Genbank SRA accession #SRR1002985, using multiple kmers (13,23,33,43,63) with SOAPdenovo-Trans v1.01. Different Kmer assemblies were combined with cd-hit-est and process with the fastx toolkit. See SOAP_assembly.qsub for the command used for this assembly.
DOI: 10.5061/dryad.r5cq0.2/7.2
title: dara_assembly.fasta

description: Assembly of Darapsa myron from Genbank SRA accession #SRR1002986, using multiple kmers (13,23,33,43,63) with SOAPdenovo-Trans v1.01. Different Kmer assemblies were combined with cd-hit-est and process with the fastx toolkit. See SOAP_assembly.qsub for the command used for this assembly.
DOI: 10.5061/dryad.r5cq0.2/8.2
title: elug1_assembly.fasta

description: Assembly of Enyo lugubris from Genbank SRA accession #SRR1002983, using multiple kmers (13,23,33,43,63) with SOAPdenovo-Trans v1.01. Different Kmer assemblies were combined with cd-hit-est and process with the fastx toolkit. See SOAP_assembly.qsub for the command used for this assembly.
DOI: 10.5061/dryad.r5cq0.2/9.2
title: hema2_assembly
DOI: 10.5061/dryad.q2b8t.1.1
title: Data from: Fire-regime complacency and sensitivity to centennial- through millennial-scale climate change in Rocky Mountain subalpine forests, Colorado, U.S.A.
DOI: 10.5061/dryad.q2b8t.2
title: Data from: Fire-regime complacency and sensitivity to centennial- through millennial-scale climate change in Rocky Mountain subalpine forests, Colorado, U.S.A.
DOI: 10.5061/dryad.q2b8t.2/1.2
title: Data and code from Higuera et al. (2014)

description: Raw and analyzed chronology, charcoal, and pollen data fromLone Pine, Odessa, Sand Beach, and Thunder lakes, and Matlab code used for analysis and creation of figures 2-4. The archive contains five directories, each with an individual readMe.txt file: 1_ageDepthData, 2_charcoalData, 3_pollenData, 4_syntheticData, 5_code.
DOI: 10.5061/dryad.t3fg2/1
title: Ericaceae phylogenies

description: Molecular phylogenies of Ericaceae. Dated maximum clade credibility (MCC) tree as inferred using BEAST. Based on rbcL and matK sequence data from GenBank and dated with 18 fossil calibrations and divergence time estimates. Different formats and taxon-subsamples as used in analyses (details see README).
DOI: 10.5281/zenodo.10524869
title: HookNet-TLS Annotations

description: Added annotations corresponding to the orginal svs TCGA files 

Added thumbnails with annotations overlay
DOI: 10.5281/zenodo.10524870
title: HookNet-TLS Annotations
DOI: 10.5281/zenodo.10614928
title: HookNet-TLS Annotations

description: Added annotations corresponding to the orginal svs TCGA files 

Added thumbnails with annotations overlay
DOI: 10.21227/mk06-r577
title: Fiber

description: A large core size and bending resistance are very important properties of mid-infrared energy transfer fibers, but large core sizes usually lead to a deterioration of bending properties. A negative-curvature nested node-free anti-resonant hollow-core fiber (AR-HCF) based on quartz is proposed. It was made by adding a nested layer to a previous AR-HCF design to provide an additional anti-resonance region while keeping the gap between adjacent tubes strictly correlated to the core diameter to produce a node-free structure. These features improve the fiber’s bending resistance while achieving a larger core diameter. The simulation results show that the radial air-glass anti-resonant layer is increased by the introduction of the nested anti-resonant tube, and the weak interference overlap between the fiber core and the cladding mode is reduced, so the fiber core’s limiting loss and the sensitivity to bending are effectively reduced. When the capillary wall thickness t of the fiber is 0.71 μm, the core diameter D is 70 μm, the ratio of the inner diameter of the cladding capillary to the core diameter d/D is 0.62, and the diameter of the nested tube is d0=29 μm, the fiber has a lower limiting loss at the wavelength of 2.79 μm, and the limiting loss is 3.28×10-4 dB/m. At the same time, the optimized structure also has good bending resistance. When the bending radius is 30 mm, the bending loss is only 4.72×10-2 dB/m. To our knowledge, this is the first research to achieve an anti-bending low-loss micro-structure hollow fiber with a bending radius of less than 30 mm in the 2.79 μm band. An anti-bending low-loss anti-resonant hollow-core fiber with this structure constitutes a reliable choice for the light guiding system of a 2.79 μm band erbium laser therapy instrument.
DOI: 10.5517/ccdc.csd.cc2fll9y
title: CCDC 2252190: Experimental Crystal Structure Determination

description: Related Article: Sheng-Nan Sun, Qian Niu, Jiao-Min Lin, Li-Ling He, Jing-Wen Shi, Qing Huang, Jiang Liu, Ya-Qian Lan|2023|Sci.Bull.|69|492|doi:10.1016/j.scib.2023.11.047
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2flj7t
title: CCDC 2252126: Experimental Crystal Structure Determination

description: Related Article: Sheng-Nan Sun, Qian Niu, Jiao-Min Lin, Li-Ling He, Jing-Wen Shi, Qing Huang, Jiang Liu, Ya-Qian Lan|2023|Sci.Bull.|69|492|doi:10.1016/j.scib.2023.11.047
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.6006618
title: Datasets and R source code of manuscript "Parasites make hosts more profitable but less available to predators"

description: Data about experimentations of DIV-1 (virus) infection on Daphnia magna. Linked article: Parasites make hosts more profitable but less available to predators
description: This work was supported by the French national program EC2CO-Biohefect/Ecodyn//Dril/MicrobiEen (Influence du parasitisme sur la distribution des flux d'énergie dans les réseaux trophiques).
DOI: 10.5281/zenodo.7685787
title: Datasets and R source code of manuscript "Parasites make hosts more profitable but less available to predators"

description: Data about experimentations of DIV-1 (virus) infection on Daphnia magna. Linked article: Parasites make hosts more profitable but less available to predators
description: This work was supported by the French national program EC2CO-Biohefect/Ecodyn//Dril/MicrobiEen (Influence du parasitisme sur la distribution des flux d'énergie dans les réseaux trophiques).
DOI: 10.5281/zenodo.6006617
title: Datasets and R source code of manuscript "Parasites make hosts more profitable but less available to predators"

description: Data about experimentations of DIV-1 (virus) infection on Daphnia magna.


Linked article: Parasites make hosts more profitable but less available to predators
description: This work was supported by the French national program EC2CO-Biohefect/Ecodyn//Dril/MicrobiEen (Influence du parasitisme sur la distribution des flux d'énergie dans les réseaux trophiques).
DOI: 10.5281/zenodo.8073920
title: Datasets and R source code of manuscript "Parasites make hosts more profitable but less available to predators"

description: Data about experimentations of DIV-1 (virus) infection on Daphnia magna.


Linked article: Parasites make hosts more profitable but less available to predators
description: This work was supported by the French national program EC2CO-Biohefect/Ecodyn//Dril/MicrobiEen (Influence du parasitisme sur la distribution des flux d'énergie dans les réseaux trophiques).
DOI: 10.6084/m9.figshare.25139240
title: data.xlsx

description: This data set consists of measure of central tendancie of most probale number represented in a table and frefuence of pathogenic bacteria in water samples
DOI: 10.6084/m9.figshare.25139240.v2
title: data.xlsx

description: This data set consists of measure of central tendancie of most probale number represented in a table and frefuence of pathogenic bacteria in water samples
DOI: 10.6084/m9.figshare.25139240.v1
title: data

description: This data set consists of measure of central tendancie of most probale number represented in a table and frefuence of pathogenic bacteria in water samples
DOI: 10.5281/zenodo.10615108
title: Dataset of Learner Preferences

description: This dataset contains learner preferences / characteristics for



Power Distance (PD)

Group Work (GW)

Competition (CP)

Gamification (GA)

Thoroughness (TH)


N=957
DOI: 10.5281/zenodo.10615109
title: Dataset of Learner Preferences

description: This dataset contains learner preferences / characteristics for



Power Distance (PD)

Group Work (GW)

Competition (CP)

Gamification (GA)

Thoroughness (TH)


N=957
DOI: 10.5281/zenodo.10501329
title: Die Stubengesellen der Gesellschaft zum Narren und Distelzwang in Bern 1485-1535

description: Die hier hinterlegten Tabellen dokumentieren alle Mitglieder der Gesellschaft zum Narren und Distelzwang in Bern zwischen 1485 und 1535, basierend auf den sogenannten Stubenrodeln der Gesellschaft in der Burgerbibliothek Bern (BBB ZA Distelzwang 138: Stubenrodel, Bd. 1 (1454–1485); BBB ZA Distelzwang 139: Stubenrodel, Bd. 2 (1486–1544)).

Die Zusammenstellung erfolgte grösstenteils im Rahmen einer 2018 an der Abteilung für Mittelalterliche Geschichte der Universität Bern eingereichten Masterarbeit ("Zwischen Geschlechtertrinkstube und Rathaus. Eine prosopographische Untersuchung der Mitglieder der Geschlechtergesellschaft 'zum Narren und Distelzwang' als Teil der politischen Führungsgruppe Berns zwischen 1485 und 1535"). Nebst allgemeinen genealogischen und biografischen Angaben zu den einzelnen Gesellschaftsmitgliedern wurde dabei insbesondere deren Tätigkeit in den wichtigsten städtischen Ämtern gemäss den in den Berner "Osterbüchern" überlieferten Ämterlisten aufgearbeitet (Staatsarchiv des Kantons Bern, StABE A I 647: Osterbuch Nr. 1 (1485–1506); StABE A I 648: Osterbuch Nr. 2 (1507–1526); StABE A I 649: Osterbuch Nr. 3 (1527–1551)). 2023 wurde die ursprüngliche Zusammenstellung für die Publikation eines Artikels zum Thema korrigiert und um zwei ergänzende Personenkataloge zu geistlichen und hochadligen Gesellschaftsmitgliedern erweitert.

Erklärende Hinweise zu den erfassten Informationen sowie spezifische Quellenangaben finden sich jeweils auf dem ersten Tabellenblatt jeder Datei.