cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6075/j0bc3xfg
title: CIL:25372, Maize mosaic virus, Peregrinus maidis, neuron associated cell. In Cell Image Library

description: Preparation: osmium tetroxide fixed tissue; glutaraldehyde fixed tissue; tissue in plastic embedment
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM)
Imaging mode: detection of electrons; illumination by electrons
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: uranyl salt; lead salt
Processing history: unprocessed raw data
Data qualification: Raw;spatialmeasurements
description: Electron micrograph of Maize mosaic virus (MMV, Rhabdoviridae) in brain cells of the insect vector Peregrinus maidis (planthopper, Hemiptera, Delphacidae). MMV virions are bullet-shaped or bacilliform, 186-213 nm long and ca. 61 nm in diameter. MMV buds through nuclear membranes and accumulates in perinuclear space in cells of the brain. The accompanying image in this group contains labels.
 
Methods: Dissected insect organs were processed for TEM by fixation in glutaraldehyde and osmium tetroxide and embedded in Spurr's medium. Thin sections were stained with uranyl acetate and lead citrate, and examined by a Philips-201 TEM.

Associated references: 
Ammar, E.-D. and S. A. Hogenhout, S.A. (2008). A neurotropic route for Maize mosaic virus (Rhabdoviridae) in its planthopper vector Peregrinus maidis. Virus Research 131: 77-85.
Ammar, E.-D. and Nault, L.R. (1985). Assembly and accumulation sites of Maize mosaic virus in its planthopper vector. Intervirology 24: 33-41.
DOI: 10.6075/j0g73cg5
title: CIL:25371, Maize mosaic virus, Peregrinus maidis, neuron associated cell. In Cell Image Library

description: Electron micrograph of Maize mosaic virus (MMV, Rhabdoviridae) in brain cells of the insect vector Peregrinus maidis (planthopper, Hemiptera, Delphacidae). MMV virions are bullet-shaped or bacilliform, 186-213 nm long and ca. 61 nm in diameter. MMV buds through nuclear membranes and accumulates in perinuclear space in cells of the brain. Abbreviations: N, nucleus. The accompanying image in this group is unlabeled.
 
Methods: Dissected insect organs were processed for TEM by fixation in glutaraldehyde and osmium tetroxide and embedded in Spurr's medium. Thin sections were stained with uranyl acetate and lead citrate, and examined by a Philips-201 TEM.

Associated references: 
Ammar, E.-D. and S. A. Hogenhout, S.A. (2008). A neurotropic route for Maize mosaic virus (Rhabdoviridae) in its planthopper vector Peregrinus maidis. Virus Research 131: 77-85.
Ammar, E.-D. and Nault, L.R. (1985). Assembly and accumulation sites of Maize mosaic virus in its planthopper vector. Intervirology 24: 33-41.
description: Preparation: osmium tetroxide fixed tissue; glutaraldehyde fixed tissue; tissue in plastic embedment
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM)
Imaging mode: detection of electrons; illumination by electrons
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: uranyl salt; lead salt
Data qualification: Processed
DOI: 10.6075/j0n0159t
title: CIL:25380, Maize mosaic virus, Peregrinus maidis. In Cell Image Library

description: Preparation: formaldehyde fixed tissue; permeabilized tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: confocal microscopy
Parameter imaged: fluorescence emission
Source of contrast: differences in adsorption or binding of stain; distribution of epitope
Visualization methods: primary antibody plus labeled secondary antibody; Alexa Fluor 488; propidium iodide
Processing history: recorded image
Data qualification: Raw;spatialmeasurements
description: Aggregates of maize mosaic virus (MMV, Rhabdoviridae) in cells of the anterior diverticulum of the insect vector Peregrinus maidis (planthopper, Hemiptera, Delphacidae). Antibodies to MMV identify aggregates (green/yellow fluorescence) that accumulate mainly around the nuclei (red) in cells of the anterior diverticulum. Accompanying image in this group contains a scale bar.

Methods: Dissected insect organs were fixed in paraformaldehyde, labeled with primary antibodies to MMV, and with secondary antibodies: Alexa Fluor-488 (green), and later stained with the nuclear stain propidium iodide (red). Whole mounts were examined with confocal laser- scanning microscope (Leica TCS SP).

Associated references: 
Ammar, E.-D. and S. A. Hogenhout, S.A. (2008). A neurotropic route for Maize mosaic virus (Rhabdoviridae) in its planthopper vector Peregrinus maidis. Virus Research 131: 77-85.
Ammar, E.-D. and Nault, L.R. (1985). Assembly and accumulation sites of Maize mosaic virus in its planthopper vector. Intervirology 24: 33-41.
DOI: 10.6075/j00v8bjd
title: CIL:25370, Maize mosaic virus, Peregrinus maidis, epithelial cell. In Cell Image Library

description: Electron micrograph of Maize mosaic virus (MMV, Rhabdoviridae) in midgut epithelial cells of the insect vector Peregrinus maidis (planthopper, Hemiptera, Delphacidae). MMV virions are bullet-shaped or bacilliform, 186-213 nm long and ca. 61 nm in diameter. MMV buds through nuclear membranes and accumulates in perinuclear space in cells of the midgut. The accompanying image in this image group includes labels and scale bar. 
 
Methods: Dissected insect organs were processed for TEM by fixation in glutaraldehyde and osmium tetroxide and embedded in Spurr's medium. Thin sections were stained with uranyl acetate and lead citrate, and examined by a Philips-201 TEM.

Associated references: 
Ammar, E.-D. and S. A. Hogenhout, S.A. (2008). A neurotropic route for Maize mosaic virus (Rhabdoviridae) in its planthopper vector Peregrinus maidis. Virus Research 131: 77-85.
Ammar, E.-D. and Nault, L.R. (1985). Assembly and accumulation sites of Maize mosaic virus in its planthopper vector. Intervirology 24: 33-41.
description: Preparation: osmium tetroxide fixed tissue; glutaraldehyde fixed tissue; tissue in plastic embedment
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM)
Imaging mode: detection of electrons; illumination by electrons
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: uranyl salt; lead salt
Processing history: unprocessed raw data
Data qualification: Raw;spatialmeasurements
DOI: 10.6075/j0h70dmj
title: CIL:25369, Maize mosaic virus, Peregrinus maidis, epithelial cell. In Cell Image Library

description: Electron micrograph of Maize mosaic virus (MMV, Rhabdoviridae) in midgut epithelial cells of the insect vector Peregrinus maidis (planthopper, Hemiptera, Delphacidae). MMV virions are bullet-shaped or bacilliform, 186-213 nm long and ca. 61 nm in diameter. MMV (V) buds through nuclear membranes and accumulates in perinuclear space in cells of the midgut. Abbreviations: bl, basal lamina; Mu, muscle fiber; V, virions. The accompanying image in this image group is unlabeled. 
 
Methods: Dissected insect organs were processed for TEM by fixation in glutaraldehyde and osmium tetroxide and embedded in Spurr's medium. Thin sections were stained with uranyl acetate and lead citrate, and examined by a Philips-201 TEM.

Associated references: 
Ammar, E.-D. and S. A. Hogenhout, S.A. (2008). A neurotropic route for Maize mosaic virus (Rhabdoviridae) in its planthopper vector Peregrinus maidis. Virus Research 131: 77-85.
Ammar, E.-D. and Nault, L.R. (1985). Assembly and accumulation sites of Maize mosaic virus in its planthopper vector. Intervirology 24: 33-41.
description: Preparation: osmium tetroxide fixed tissue; glutaraldehyde fixed tissue; tissue in plastic embedment
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM)
Imaging mode: detection of electrons; illumination by electrons
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: uranyl salt; lead salt
Processing history: unprocessed raw data
Data qualification: Raw;spatialmeasurements
DOI: 10.6075/j07m06sm
title: CIL:25366, Maize mosaic virus, Peregrinus maidis, hemocyte (sensu Nematoda and Protostomia). In Cell Image Library

description: Aggregates of maize mosaic virus (MMV, Rhabdoviridae) in cells from hemolymph of the insect vector Peregrinus maidis (planthopper, Hemiptera, Delphacidae). Antibodies to MMV identify aggregates (green/yellow fluorescence) that accumulate mainly around the nuclei (red) of hemocytes. 

Methods: Hemolymph smears were fixed in paraformaldehyde, labeled with primary antibodies to MMV, and with secondary antibodies: Alexa Fluor-488 (green), and later stained with the nuclear stain propidium iodide (red). Smears were examined with confocal laser- scanning microscope (Leica TCS SP).

Associated references: 
Ammar, E.-D. and S. A. Hogenhout, S.A. (2008). A neurotropic route for Maize mosaic virus (Rhabdoviridae) in its planthopper vector Peregrinus maidis. Virus Research 131: 77-85.
Ammar, E.-D. and Nault, L.R. (1985). Assembly and accumulation sites of Maize mosaic virus in its planthopper vector. Intervirology 24: 33-41.
description: Preparation: formaldehyde fixed tissue; permeabilized tissue
Item type: recorded image
Imaging mode: confocal microscopy
Parameter imaged: fluorescence emission
Source of contrast: differences in adsorption or binding of stain; distribution of epitope
Visualization methods: primary antibody plus labeled secondary antibody; Alexa Fluor 488; propidium iodide
Data qualification: Raw
DOI: 10.6075/j0rf5sx8
title: CIL:25364, Maize mosaic virus, Peregrinus maidis, secretory cell. In Cell Image Library

description: Preparation: osmium tetroxide fixed tissue; glutaraldehyde fixed tissue; tissue in plastic embedment
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM)
Imaging mode: detection of electrons; illumination by electrons
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: uranyl salt; lead salt
Processing history: unprocessed raw data
Data qualification: Raw;spatialmeasurements
description: Electron micrograph of Maize mosaic virus (MMV, Rhabdoviridae) in the accessory salivary gland of the insect vector Peregrinus maidis (planthopper, Hemiptera, Delphacidae). MMV virions are bullet-shaped or bacilliform, 186-213 nm long and ca. 61 nm in diameter. MMV buds through nuclear membranes and accumulates in perinuclear space in cells of the accessory salivary gland. The accompanying image in this image group includes labels and scale bar. 
 
Methods: Dissected insect organs were processed for TEM by fixation in glutaraldehyde and osmium tetroxide and embedded in Spurr's medium. Thin sections were stained with uranyl acetate and lead citrate, and examined by a Philips-201 TEM.

Associated references: 
Ammar, E.-D. and S. A. Hogenhout, S.A. (2008). A neurotropic route for Maize mosaic virus (Rhabdoviridae) in its planthopper vector Peregrinus maidis. Virus Research 131: 77-85.
Ammar, E.-D. and Nault, L.R. (1985). Assembly and accumulation sites of Maize mosaic virus in its planthopper vector. Intervirology 24: 33-41.
DOI: 10.6075/j0rb73cj
title: CIL:25363, Maize mosaic virus, Peregrinus maidis, secretory cell. In Cell Image Library

description: Electron micrograph of Maize mosaic virus (MMV, Rhabdoviridae) in cells of the insect vector Peregrinus maidis (planthopper, Hemiptera, Delphacidae). MMV virions are bullet-shaped or bacilliform, 186-213 nm long and ca. 61 nm in diameter. MMV (arrows) buds through nuclear membranes and accumulates in perinuclear space in cells of the accessory salivary gland. Abbreviations: N, nucleus. The accompanying image in this image group is unlabeled. 
 
Methods: Dissected insect organs were processed for TEM by fixation in glutaraldehyde and osmium tetroxide and embedded in Spurr's medium. Thin sections were stained with uranyl acetate and lead citrate, and examined by a Philips-201 TEM.

Associated references: 
Ammar, E.-D. and S. A. Hogenhout, S.A. (2008). A neurotropic route for Maize mosaic virus (Rhabdoviridae) in its planthopper vector Peregrinus maidis. Virus Research 131: 77-85.
Ammar, E.-D. and Nault, L.R. (1985). Assembly and accumulation sites of Maize mosaic virus in its planthopper vector. Intervirology 24: 33-41.
description: Preparation: osmium tetroxide fixed tissue; glutaraldehyde fixed tissue; tissue in plastic embedment
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM)
Imaging mode: detection of electrons; illumination by electrons
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: uranyl salt; lead salt
Processing history: unprocessed raw data
Data qualification: Raw;spatialmeasurements
DOI: 10.15468/dl.52vhh6
title: Occurrence Download

description: A dataset containing 20818 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acer pictum",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "OccurrenceStatus is Present",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than or equal to 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 },
 "EventDate is greater than or equal to 1991-01-01",
 "EventDate is less than or equal to 2025-10-31"
 ]
}

 The dataset includes 20818 records from 140 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009385-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8xwewj
title: Occurrence Download

description: A dataset containing 1189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is Europe",
 "Geometry POLYGON((-22.06411 43.20303,1.17264 34.14666,55.86837 43.08386,38.47056 77.16443,20.35785 79.42852,19.48442 62.21891,18.3584 55.25137,12.01765 54.96512,12.11224 53.641,6.62661 54.49221,3.32743 53.49666,-6.50647 45.08906,-22.06411 43.20303))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Chenopodium ficifolium"
 ]
}

 The dataset includes 1189 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009386-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6075/j01n8061
title: CIL:2840, Caenorhabditis elegans. In Cell Image Library

description: Terminal Bulb is a dataset of DIC (differential interference contrast) 20x microscopy images of the pharynx terminal bulb of C. elegans at different ages (0, 2, 4, 6, 8, 10, 12 days). Note that the data sets for each age can be found by searching for a featured image from each set: CIL 1587, 1694, 1905, 2213, 2622, 2544, and 2606, respectively.
description: The purpose of the dataset C. elegans terminal bulb aging is to deduce the age of the nemathode based on images of the pharynx terminal bulb (part of the eating apparatus). Images of C. elegans were taken at different chronological ages. This image is part of the day 8 data set. Note that the morphological and chronological ages are not fully correlated due to the variability among individuals even though the individuals are genetically identical. The source for the dataset is Laboratory of Genetics/NIA/NIH.
description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: differential interference contrast microscopy
Parameter imaged: optical path length gradient
Source of contrast: boundaries between regions with different refractive index
Visualization methods: visualization of contiguous regions
Processing history: unprocessed raw data
DOI: 10.6075/j0x929mg
title: CIL:41131, Enterobacteria phage T4. In Cell Image Library

description: Preparation: whole mounted tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: uranyl salt
Processing history: unprocessed raw data
description: Images collected on a JEOL 1010 TEM. Please refer to http://remf.dartmouth.edu:8080/EM-Wiki for details on specimen preparation.
description: Transmission electron microscope image of T4Phage, a bacteriophage that infects Escherichia coli bacteria.This image is part of an image group (CIL:41124-41131).
DOI: 10.6075/j0ms3rm8
title: CIL:26304, Saccharomyces cerevisiae. In Cell Image Library

description: Endoplasmic reticulum (ER) domains in 3D in a wild type S. cerevisiae cell (wt = BY4742) with a 908-nm bud. Domains are color coded as follows: Golgi (purple), and vesicles (30 nm is shown in pink, and 60 nm is shown in white), cecER and tubER (yellow and green), and pmaER alone (blue). Haploid cells were high pressure frozen and then freeze substituted with 0.1% uranyl acetate and 0.25% glutaraldehyde in anhydrous acetone, embedded in Lowicryl, and an 80-nm serial thin sections and 200-nm serial semithick sections were cut with an ultramicrotome. Dual-axis tilt series were collected from the samples from +/-60° with 1° increments at 300 kV using SerialEM (Mastronarde, 1997) at 300 kV using a field emission gun (Tecnai 30; FEI). Tilt series were recorded at a magnification of 23,000× using SerialEM (Mastronarde, 2005). After 2x binning on the recording 4098 x 4098–pixel charge-coupled device camera (Megascan 795; Gatan, Inc.), this magnification creates a 2000 x 2000–pixel image with a pixel size of 1.02 nm on the specimen. The nominal resolution in our tomograms was ~4 nm, based upon section thickness, number of tilts, tilt increments, and tilt angle range (Crowther relation; Koster et al., 1997). The IMOD package (Kremer et al., 1996) and its newest viewer, 3DMOD 4.0.11, were used to construct individual tomograms. Videos were made in 3DMOD and assembled in QuickTime Pro 7. Bar is 200 nm. Video relates to Figure 2 and Video 4 of J Cell Biol 2011 193:333-346.
description: Preparation: high pressure freezing; freeze substitution
Relation to intact cell: microtome-sectioned tissue
Item type: portrayed image
Imaging mode: transmission electron microscopy (TEM); tilt series; tomogram
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: uranyl salt
Processing history: surface rendering; volume rendering
DOI: 10.57760/sciencedb.j00140.00062
title: Original Data for SPH and Free-Surface Flow Simulation Based on Improved Particle Shifting Technique
title: 基于改进粒子移位技术的SPH与自由表面流模拟原始数据

description: Raw particle data generated by Fortran code on the Visual Studio platform (source code not public as it is the core of our lab project). Simulations are computed with uniform time steps and cover three cases: numerical wave making, square droplet rotation, and droplet oscillation. Each particle file follows a consistent column schema: id, X, Y, VX, VY, density, pressure.Special datasets are included: (i) wave-probe records for numerical wave making—first column is time; subsequent columns are wave heights from probes placed every 0.25 m—plus wave-making particle data; (ii) center-of-mass pressure and total energy for the square droplet rotation; (iii) horizontal semi-major-axis evolution for droplet oscillation—first column is time; second is axis length. Data can be visualized (e.g., in MATLAB) to reproduce the figures reported in the associated article.The dataset primarily comprises results obtained with NPST (Normal Particle Shifting Technique) and IPST (Improved Particle Shifting Technique). It also includes NPST results at multiple spatial resolutions. Users can extract and compare these subsets for analyses such as convergence studies and the time-history curve of pressure at the domain center, as presented in the paper.
description: Raw particle data generated by Fortran code on the Visual Studio platform (source code not public as it is the core of our lab project). Simulations are computed with uniform time steps and cover three cases: numerical wave making, square droplet rotation, and droplet oscillation. Each particle file follows a consistent column schema: id, X, Y, VX, VY, density, pressure.Special datasets are included: (i) wave-probe records for numerical wave making—first column is time; subsequent columns are wave heights from probes placed every 0.25 m—plus wave-making particle data; (ii) center-of-mass pressure and total energy for the square droplet rotation; (iii) horizontal semi-major-axis evolution for droplet oscillation—first column is time; second is axis length. Data can be visualized (e.g., in MATLAB) to reproduce the figures reported in the associated article.The dataset primarily comprises results obtained with NPST (Normal Particle Shifting Technique) and IPST (Improved Particle Shifting Technique). It also includes NPST results at multiple spatial resolutions. Users can extract and compare these subsets for analyses such as convergence studies and the time-history curve of pressure at the domain center, as presented in the paper.
DOI: 10.6075/j061101g
title: CIL: 54120. In Cell Image Library

description: TK family: The human kinome comprises 538 kinases playing essential cellular functions by catalyzing protein phosphorylations. Systematic annotation of subcellular spatial distribution of the kinome greatly facilitates investigation of normal and disease mechanisms. Here, we present Kinome Atlas (KA), an image-based map of the kinome annotated to 10 compartments of the cell. 456 epitope-tagged kinases, representing 85% of the human kinome, were expressed in HeLa cells and imaged by immunofluorescent microscopy under a unified condition. KA revealed kinase family-enriched subcellular localizations, and discovered a collection of new kinase localizations at mitochondria, plasma membrane, extracellular space, and other unique structures. This resource provides the first snapshot of the kinome under a unified condition, and is a key step toward comprehensive understanding of the spatial and temporal dynamics of the kinome in physiological and disease states.
description: Kinome Atlas documented representative images for 456 kinases expressed in HeLa cells, and visualized by immunofluorescence staining of the epitope tag. Nuclei were stained with DAPI. Two representative views from confocal microscopy were collected for each kinase. Also, organelle markers were co-stained for some kinases to indicate specific localization.
description: Visualization methods: confocal microscopy
DOI: 10.6075/j09p3188
title: CIL: 53081, Homo sapiens, High-grade serious overian cancer. In Cell Image Library

description: Imaging mode: Fluorescence in situ hybridization (FISH)
Visualization methods: Nikon Eclipse fluorescence inverted microscope equipped with a charge-coupled device camera (Andor Neo sCMOS), using filter sets for DAPI/ YGFP/TRITC/CY GFP with an objective lens (Plan Apo VC 100x, Nikon). Captured with 100x magnification of the objective and a pixel size of 0.07 microns
description: One z layer of a z-stack at the given image
description: Image 1, z=6 from SC_030