cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.774781
title: Seawater carbonate chemistry, Mg/Ca, Sr/Ca, oxygen production and calcification rate during experiments with coral Pocillopora damicornis, 2011

description: The Sr/Ca of aragonitic coral skeletons is a commonly used palaeothermometer. However skeletal Sr/Ca is typically dominated by weekly-monthly oscillations which do not reflect temperature or seawater composition and the origins of which are currently unknown. To test the impact of transcellular Ca2+ transport processes on skeletal Sr/Ca, colonies of the branching coral, Pocillopora damicornis, were cultured in the presence of inhibitors of Ca-ATPase (ruthenium red) and Ca channels (verapamil hydrochloride). The photosynthesis, respiration and calcification rates of the colonies were monitored throughout the experiment. The skeleton deposited in the presence of the inhibitors was identified (by 42Ca spike) and analysed for Sr/Ca and Mg/Ca by secondary ion mass spectrometry. The Sr/Ca of the aragonite deposited in the presence of either of the inhibitors was not significantly different from that of the solvent (dimethyl sulfoxide) control, although the coral calcification rate was reduced by up to 66% and 73% in the ruthenium red and verapamil treatments, respectively. The typical precision (95% confidence limits) of mean Sr/Ca determinations within any treatment was &lt;±1% and differences in skeletal Sr/Ca between treatments were correspondingly small. Either Ca-ATPase and Ca channels transport Sr2+ and Ca2+ in virtually the same ratio in which they are present in seawater or transcellular processes contribute little Ca2+ to the skeleton and most Ca is derived from seawater transported directly to the calcification site. Variations in the activities of Ca-ATPase and Ca-channels are not responsible for the weekly-monthly Sr/Ca oscillations observed in skeletal chronologies, assuming that the specificities of Ca transcellular transport processes are similar between coral genera.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
description: Supplement to: Allison, Nicola; Cohen, Itay; Finch, Adrian A; Erez, Jonathan; EMIF (2011): Controls on Sr/Ca and Mg/Ca in scleractinian corals: The effects of Ca-ATPase and transcellular Ca channels on skeletal chemistry. Geochimica et Cosmochimica Acta, 75(21), 6350-6360
DOI: 10.1594/pangaea.736931
title: Seawater carbonate chemistry and biological processes during experiments with spider crab Hyas araneus, 2009

description: Future scenarios for the oceans project combined developments of CO2 accumulation and global warming and their impact on marine ecosystems. The synergistic impact of both factors was addressed by studying the effect of elevated CO2 concentrations on thermal tolerance of the cold-eurythermal spider crab Hyas araneus from the population around Helgoland. Here ambient temperatures characterize the southernmost distribution limit of this species. Animals were exposed to present day normocapnia (380 ppm CO2), CO2 levels expected towards 2100 (710 ppm) and beyond (3000 ppm). Heart rate and haemolymph PO2 (PeO2) were measured during progressive short term cooling from 10 to 0°C and during warming from 10 to 25°C. An increase of PeO2 occurred during cooling, the highest values being reached at 0°C under all three CO2 levels. Heart rate increased during warming until a critical temperature (Tc) was reached. The putative Tc under normocapnia was presumably &gt;25°C, from where it fell to 23.5°C under 710 ppm and then 21.1°C under 3000 ppm. At the same time, thermal sensitivity, as seen in the Q10 values of heart rate, rose with increasing CO2concentration in the warmth. Our results suggest a narrowing of the thermal window of Hyas araneus under moderate increases in CO2 levels by exacerbation of the heat or cold induced oxygen and capacity limitation of thermal tolerance.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
description: Supplement to: Walther, Kathleen; Sartoris, Franz-Josef; Bock, C; Pörtner, Hans-Otto (2009): Impact of anthropogenic ocean acidification on thermal tolerance of the spider crab Hyas araneus. Biogeosciences, 6(10), 2207-2215
DOI: 10.1594/pangaea.972144
title: Seawater carbonate chemistry and mortality and net calcification rates of Mediterranean scleractinian corals

description: In the present study, we investigated from July 2010 to April 2012 the effects of in situ exposure to different pH levels (range pHTS 7.4–8.1) and seasonal temperatures (range 15.5–25.6 °C) on the mortality and net calcification rates of Mediterranean scleractinian corals transplanted near a volcanic CO2 vent off Panarea Island (Aeolian Islands, southern Italy) which generates a pH gradient at ambient temperature. This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-09-02.
DOI: 10.1594/pangaea.918449
title: Alkalinity in porewater profile of sediment core BOX_2GL01 from the Gulf of Cádiz (North East Atlantic)
DOI: 10.1594/pangaea.918457
title: Alkalinity in porewater profile of sediment core BOX_3BC04 from the Gulf of Cádiz (North East Atlantic)
DOI: 10.1594/pangaea.918460
title: Alkalinity in porewater profile of sediment core BOX_3GL01 from the Gulf of Cádiz (North East Atlantic)
DOI: 10.1594/pangaea.918462
title: Alkalinity in porewater profile of sediment core BOX_3GL02 from the Gulf of Cádiz (North East Atlantic)
DOI: 10.1594/pangaea.972145
title: Seawater carbonate chemistry and oxidative stress level and antioxidant responses in the planktonic copepod of the genus Acartia

description: We based our study on one of the most abundant zooplankton species Acartia bifilosa, which were collected from different depths (according to the depth of maximum copepod abundance) and times of day (night and day) during a two-week field survey in the western Gulf of Finland. We measured different biomarkers to reveal potential relationships between copepod antioxi dant defense, oxidative stress and the environmental condition (Chl a, pH, DIC, salinity, temperature) at different depth.This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-09-02.
DOI: 10.1594/pangaea.930309
title: Seawater carbonate chemistry and physiological performance in the Coccolithophorid Emiliania huxleyi

description: While seawater acidification induced by elevated CO2 is known to impact coccolithophores, the effects in combination with decreased salinity caused by sea ice melting and/or hydrological events have not been documented. Here we show the combined effects of seawater acidification and reduced salinity on growth, photosynthesis and calcification of Emiliania huxleyi grown at 2 CO2 concentrations (low CO2 LC:400 μatm; high CO2 HC:1000 μatm) and 3 levels of salinity (25, 30, and 35 per mil). A decrease of salinity from 35 to 25 per mil increased growth rate, cell size and photosynthetic performance under both LC and HC. Calcification rates were relatively insensitive to salinity though they were higher in the LC-grown compared to the HC-grown cells at 25 per mil salinity, with insignificant differences under 30 and 35 per mil. Since salinity and OA treatments did not show interactive effects on calcification, changes in calcification: photosynthesis ratios are attributed to the elevated photosynthetic rates at lower salinities, with higher ratios of calcification to photosynthesis in the cells grown under 35 per mil compared with those grown at 25 per mil. In contrast, photosynthetic carbon fixation increased almost linearly with decreasing salinity, regardless of the pCO2 treatments. When subjected to short-term exposure to high light, the low-salinity-grown cells showed the highest photochemical effective quantum yield with the highest repair rate, though the HC treatment enhanced the PSII damage rate. Our results suggest that, irrespective of pCO2, at low salinity Emiliania huxleyi up-regulates its photosynthetic performance which, despite a relatively insensitive calcification response, may help it better adapt to future ocean global environmental changes, including ocean acidification, especially in the coastal areas of high latitudes.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-04-07.
DOI: 10.1594/pangaea.763908
title: Seawater carbonate chemistry duirng experiments with sea urchin Paracentrotus lividus, 2011

description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
DOI: 10.1594/pangaea.931777
title: The effects of elevated pCO2 and nutrient levels on Dasysiphonia and Porphyra and the effects of competition and elevated pCO2 and nutrients on the growth of Dasysiphonia and Agardhiella

description: Coastal ecosystems are prone to multiple anthropogenic and natural stressors including eutrophication, acidification, and invasive species. While the growth of some macroalgae can be promoted by excessive nutrient loading and/or elevated pCO2, responses differ among species and ecosystems. Native to the western Pacific Ocean, the filamentous, turf-forming rhodophyte, Dasysiphonia japonica, appeared in estuaries of the northeastern Atlantic Ocean during the 1980s and the northwestern Atlantic Ocean during the late 2000s. Here, we report on the southernmost expansion of the D. japonica in North America and the effects of elevated nutrients and elevated pCO2 on the growth of D. japonica over an annual cycle in Long Island, New York, USA. Growth limitation of the macroalga varied seasonally. During winter and spring, when water temperatures were &lt; 15 °C, growth was significantly enhanced by elevated pCO2 (p &lt; 0.05). During summer and fall, when the water temperature was 15–24 °C, growth was significantly higher under elevated nutrient treatments (p &lt; 0.05). When temperatures reached 28 °C, the macroalga grew poorly and was unaffected by nutrients or pCO2. The delta 13C content of regional populations of D. japonica was −30 per mil, indicating the macroalga is an obligate CO2-user. This result, coupled with significantly increased growth under elevated pCO2 when temperatures were &lt; 15 °C, indicates this macroalga is carbon-limited during colder months, when in situ pCO2 was significantly lower in Long Island estuaries compared to warmer months when estuaries are enriched in metabolically derived CO2. The delta 15N content of this macroalga (9 per mil) indicated it utilized wastewater-derived N and its N limitation during warmer months coincided with lower concentrations of dissolved inorganic N in the water column. Given the stimulatory effect of nutrients on this macroalga and that eutrophication can promote seasonally elevated pCO2, this study suggests that eutrophic estuaries subject to peak annual temperatures &lt; 28 °C may be particularly vulnerable to future invasions of D. japonica as ocean acidification intensifies. Conversely, nutrient reductions would serve as a management approach that would make coastal regions more resilient to invasions by this macroalga.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-05-18.
DOI: 10.1594/pangaea.847792
title: The nitrogen costs of photosynthesis in a diatom under current and future pCO2

description: With each cellular generation, oxygenic photoautotrophs must accumulate abundant protein complexes that mediate light capture, photosynthetic electron transport and carbon fixation. In addition to this net synthesis, oxygenic photoautotrophs must counter the light-dependent photoinactivation of Photosystem II (PSII), using metabolically expensive proteolysis, disassembly, resynthesis and re-assembly of protein subunits. We used growth rates, elemental analyses and protein quantitations to estimate the nitrogen (N) metabolism costs to both accumulate the photosynthetic system and to maintain PSII function in the diatom Thalassiosira pseudonana, growing at two pCO2 levels across a range of light levels. The photosynthetic system contains c. 15-25% of total cellular N. Under low growth light, N (re)cycling through PSII repair is only c. 1% of the cellular N assimilation rate. As growth light increases to inhibitory levels, N metabolite cycling through PSII repair increases to c. 14% of the cellular N assimilation rate. Cells growing under the assumed future 750 ppmv pCO2 show higher growth rates under optimal light, coinciding with a lowered N metabolic cost to maintain photosynthesis, but then suffer greater photoinhibition of growth under excess light, coincident with rising costs to maintain photosynthesis. We predict this quantitative trait response to light will vary across taxa.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2015-07-03.
description: Supplement to: Li, Gang; Brown, Christopher M; Jeans, Jennifer A; Donaher, Natalie A; McCarthy, Avery; Campbell, Douglas A (2015): The nitrogen costs of photosynthesis in a diatom under current and future pCO2. New Phytologist, 205(2), 533-543
DOI: 10.1594/pangaea.914654
title: Seawater carbonate chemistry and fish cognitive performance

description: Ocean acidification is one of the many consequences of climate change. Various studies suggest that marine organisms' behaviour will be impaired under high CO2. Here, we show that the cognitive performance of the cleaner wrasse, Labroides dimidiatus, has not suffered from the increase of CO2 from pre-industrial levels to today, and that the standing variation in CO2 tolerance offers potential for adaptation to at least 750 µatm. We acclimated cleaners over 30 days to five levels of pCO2, from pre-industrial to high future CO2 scenarios, before testing them in an ecologically relevant task—the ability to learn to prioritize an ephemeral food source over a permanent one. Fish learning abilities remained stable from pre-industrial to present-day pCO2. While performance was reduced under mid (750 µatm) and high CO2 (980 µatm) scenarios, under the former 36% of cleaners still solved the task. The presence of tolerant individuals reveals potential for adaptation, as long as selection pressure on cognitive performance is strong. However, the apparent absence of high CO2 tolerant fish, and potentially synergistic effects between various climate change stressors, renders the probability of further adaptation unlikely.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-04-02.
DOI: 10.1594/pangaea.972373
title: Seawater carbonate chemistry and oyster growth and shell properties within a year monitoring at two distinct depths in Coliumo Bay

description: In a year-long study, Pacific oysters (Magallana gigas) were monitored at two depths (1.5m, 6.5m) in a Coliumo Bay affected by coastal upwelling. Surface waters exhibited warmer, well-oxygenated conditions and higher chlorophyll-a concentrations, while at depth greater hypoxia and acidification events occur, especially during upwelling. This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-09-06.
DOI: 10.1594/pangaea.830616
title: Hydrochemistry of bottom water measured with benthic chamber lander in the area of Sleipner gas field during G. O. Sars cruise CGB-ECO2-2012A

description: Water samples were collected in 60ml syringes, which were attached to the chambers of the benthic lander system and released by following a pre-programmed time sequence.
DOI: 10.1594/pangaea.930400
title: Seawater carbonate chemistry and bacterial diversity of intertidal bacterial biofilm communities

description: The effects of ocean acidification on ecosystems remain poorly understood, because it is difficult to simulate the effects of elevated CO2 on entire marine communities. Natural systems enriched in CO2 are being used to help understand the long-term effects of ocean acidification in situ. Here, we compared biofilm bacterial communities on intertidal cobbles/boulders and bedrock along a seawater CO2 gradient off Japan. Samples sequenced for 16S rRNA showed differences in bacterial communities with different pCO2 and between habitat types. In both habitats, bacterial diversity increased in the acidified conditions. Differences in pCO2 were associated with differences in the relative abundance of the dominant phyla. However, despite the differences in community composition, there was no indication that these changes would be significant for nutrient cycling and ecosystem function. As well as direct effects of seawater chemistry on the biofilm, increased microalgal growth and decreased grazing may contribute to the shift in bacterial composition at high CO2, as documented by other studies. Thus, the effects of changes in bacterial community composition due to globally increasing pCO2 levels require further investigation to assess the implications for marine ecosystem function. However, the apparent lack of functional shifts in biofilms along the pCO2 gradient is a reassuring indicator of stability of their ecosystem functions in shallow ocean margins.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-04-07.
DOI: 10.1594/pangaea.968971
title: Seawater carbonate chemistry and biological response to fluctuating seawater ph conditions in sea urchin echinus esculentus larvae

description: Using a complex experimental design, we investigated what part of the pH variability is driving the biological response of the sea urchin Echinus esculentus larvae. Comparing stable (pH 8.13, 7.82, 7.53) and fluctuating treatments (12 h at pH 8.13 and 12 h at pH 7.53) following natural or inverted diurnal cycles.This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were extracted from tables in the related paper (see Related to) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-06-12.
DOI: 10.1594/pangaea.931665
title: Dissolved iron speciation from water samples during METEOR cruise M136

description: The file contains measurements of iron (Fe) speciation of water samples collected on the Peruvian shelf and slope region. Determinations of iron speciation were analyzed via Adsorptive Cathodic Stripping Voltammetry (Gledhill and Buck. 2012, Frontiers in Microbiology).