cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8099621.v1
title: Additional file 2: of Mitochondrial genome and transcriptome analysis of five alloplasmic male-sterile lines in Brassica juncea

description: Table S2. Statistical result of PacBio sequencing of Diplotaxis catholica mitochondrial genome. (XLSX 9â kb)
DOI: 10.6084/m9.figshare.21206713.v1
title: Additional file 2 of Selection and Validation of 48 KASP Markers for Variety Identification and Breeding Guidance in Conventional and Hybrid Rice (Oryza sativa L.)

description: Additional file 2: Table S2 The list of 46 varieties.
DOI: 10.6084/m9.figshare.21206725
title: Additional file 6 of Selection and Validation of 48 KASP Markers for Variety Identification and Breeding Guidance in Conventional and Hybrid Rice (Oryza sativa L.)

description: Additional file 6: Table S6 The result of PCA of 46 varieties using 331 markers and 48 markers.
DOI: 10.6084/m9.figshare.8099657
title: Additional file 8: of Mitochondrial genome and transcriptome analysis of five alloplasmic male-sterile lines in Brassica juncea

description: Table S7. Reference chloroplast genome list of Brassica. (XLSX 9â kb)
DOI: 10.6084/m9.figshare.8099654
title: Additional file 7: of Mitochondrial genome and transcriptome analysis of five alloplasmic male-sterile lines in Brassica juncea

description: Table S6. Reference mitochondrial genome list of Brassica. (XLSX 9â kb)
DOI: 10.6084/m9.figshare.21206734.v1
title: Additional file 9 of Selection and Validation of 48 KASP Markers for Variety Identification and Breeding Guidance in Conventional and Hybrid Rice (Oryza sativa L.)

description: Additional file 9: Table S9 The 48 KASP genotype of 193 hybrid varieties.
DOI: 10.6084/m9.figshare.21206707.v1
title: Additional file 15 of Selection and Validation of 48 KASP Markers for Variety Identification and Breeding Guidance in Conventional and Hybrid Rice (Oryza sativa L.)

description: Additional file 15: Table S15 The result of PCA of 193 hybrid varieties using 48 KASP markers.
DOI: 10.6084/m9.figshare.19633843.v1
title: Additional file 1 of Transcriptomic profiling of pemphigus lesion infiltrating mononuclear cells reveals a distinct local immune microenvironment and novel lncRNA regulators

description: Additional file 1. Supplementary figures
DOI: 10.6084/m9.figshare.19633852.v1
title: Additional file 4 of Transcriptomic profiling of pemphigus lesion infiltrating mononuclear cells reveals a distinct local immune microenvironment and novel lncRNA regulators

description: Additional file 4. Enrichment results of the brown module
DOI: 10.6084/m9.figshare.18585353.v1
title: The diagnostic value of serum YKL-40 in endometrial cancer: a meta-analysis

description: Serum YKL-40 is a promising non-invasive biomarker for the early diagnosis of endometrial cancer (EC), but its value is disputed. To investigate the serum YKL-40 in the early diagnostic value of EC. Databases were systematically searched again before April 2021 and 14 studies were finally included in this meta-analysis. Pooled sensitivity, specificity, negative likelihood ratio (NLR), positive likelihood ratio (PLR), diagnostic odds ratio (DOR), and summary receiver operating characteristic (SROC) curve analyses were assessed. This meta-analysis investigated the source of heterogeneity using sensitivity analysis, subgroup analysis, and meta-regression. Databases were systematically searched again before April 2021 and 14 studies were finally included in this meta-analysis. First, the SROC curve presented an area under the curve (AUC) of 0.853 (SE = 0.0213) for YKL-40 alone and an AUC of 0.946 (SE = 0.0268) for YKL-40 combined with other biomarkers. Second, diagnostic types might be related to the diagnostic accuracy and is a significant source of heterogeneity (<i>P</i> = 0.035). Serum YKL-40 helped diagnose EC, and its combination with other biomarkers was better than itself alone.
DOI: 10.6084/m9.figshare.21206719.v1
title: Additional file 4 of Selection and Validation of 48 KASP Markers for Variety Identification and Breeding Guidance in Conventional and Hybrid Rice (Oryza sativa L.)

description: Additional file 4: Table S4 The list of 50 KASP markers.
DOI: 10.6084/m9.figshare.8099621
title: Additional file 2: of Mitochondrial genome and transcriptome analysis of five alloplasmic male-sterile lines in Brassica juncea

description: Table S2. Statistical result of PacBio sequencing of Diplotaxis catholica mitochondrial genome. (XLSX 9â kb)
DOI: 10.6084/m9.figshare.19633846
title: Additional file 2 of Transcriptomic profiling of pemphigus lesion infiltrating mononuclear cells reveals a distinct local immune microenvironment and novel lncRNA regulators

description: Additional file 2. SIMC expression profiling data
DOI: 10.6084/m9.figshare.19633846.v1
title: Additional file 2 of Transcriptomic profiling of pemphigus lesion infiltrating mononuclear cells reveals a distinct local immune microenvironment and novel lncRNA regulators

description: Additional file 2. SIMC expression profiling data
DOI: 10.6084/m9.figshare.8099636.v1
title: Additional file 4: of Mitochondrial genome and transcriptome analysis of five alloplasmic male-sterile lines in Brassica juncea

description: Table S3. SNP number counts between alloplasmic mitochondrial genome and Brassica juncea mitochondrial genome. (XLSX 9â kb)
DOI: 10.6084/m9.figshare.21206725.v1
title: Additional file 6 of Selection and Validation of 48 KASP Markers for Variety Identification and Breeding Guidance in Conventional and Hybrid Rice (Oryza sativa L.)

description: Additional file 6: Table S6 The result of PCA of 46 varieties using 331 markers and 48 markers.
DOI: 10.6084/m9.figshare.11769750
title: Additional file 5 of Effects of excess sugars and lipids on the growth and development of Caenorhabditis elegans

description: Additional file 5: File S4. Genes significantly up-regulated and down-regulated in nematodes after 3.29 μM resveratrol treatment compared to the 400 mM sucrose- 500 μg/mL stearic acid treated group.
DOI: 10.6084/m9.figshare.21206731.v1
title: Additional file 8 of Selection and Validation of 48 KASP Markers for Variety Identification and Breeding Guidance in Conventional and Hybrid Rice (Oryza sativa L.)

description: Additional file 8: Table S8 The 48 KASP genotype of 325 conventional varieties.
DOI: 10.6084/m9.figshare.19633800.v1
title: Additional file 2 of Comprehensive evaluation of Chinese peanut mini-mini core collection and QTL mapping for aflatoxin resistance

description: Additional file 2: Table S1. Correlation analysis of three resistances. Table S2. Correlation analysis between three resistances and other traits. Table S3. The information of the 99 accessions which are derived into two sub-groups. Table S4. The distribution of SNPs and Indels. Table S5. The information of candidate genes.
DOI: 10.6084/m9.figshare.22779645
title: Isolation and identification of pigment-producing filamentous fungus DBFL05 and its pigment characteristics and chemical structure

description: Natural pigments derived from microorganisms have many advantages and are widely studied in the food industry. A filamentous fungus, DBFL05, was identified as <i>Aspergillus ustus</i>, which produces a bright and abundant brown pigment. This extracellular, water-soluble pigment is highly polar and slightly soluble in alcohol but insoluble in other organic solvents. The pigment is stable under sunlight, at pH 2–10, and below 100°C. However, it is sensitive to Zn<sup>2+</sup>, Fe<sup>3+</sup>, Fe<sup>2+</sup>, and Cu<sup>2+</sup>. The pigment is mainly composed of two chemical components, pyrropyrazine diketone and dianthrone, and is classified as a polyketone pigment. Both components of the pigment exhibit inhibitory effects on bacteria and scavenging abilities for •OH and DPPH. The pigment showed no significant toxicity to plants and low toxicity to brine shrimp larvae. These findings indicate that the easily obtainable <i>A. ustus</i> pigment is a polyketone with attractive colour, stability, safety, and bioactivity.
DOI: 10.6084/m9.figshare.7587560
title: Additional file 10: of Comparative transcriptome analysis of two selenium-accumulating genotypes of Aegilops tauschii Coss. in response to selenium

description: Data S7. KEGG pathway annotation of unique DEGs in each group of CK1 vs.T1 and CK2 vs.T2. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.7587560.v1
title: Additional file 10: of Comparative transcriptome analysis of two selenium-accumulating genotypes of Aegilops tauschii Coss. in response to selenium

description: Data S7. KEGG pathway annotation of unique DEGs in each group of CK1 vs.T1 and CK2 vs.T2. (XLSX 16 kb)
DOI: 10.5517/ccdc.csd.cc2h2cwv
title: CCDC 2296197: Experimental Crystal Structure Determination

description: Related Article: Navid Assi, Christophe Lahoud, Petr Brázda, Dominika Zákutná, Daniel N. Rainer, Jakub Hraníček, Jan Rohlíček, Václav Tyrpekl|2024|New J.Chem.|48|1071|doi:10.1039/D3NJ04635D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h2m7g
title: CCDC 2296425: Experimental Crystal Structure Determination

description: Related Article: Jingyun Ren|2023|CSD Communication|||
description: Related Article: Shiwen Fan, Runxia Ma, Aohua Yang, Hongbo Jia, Yufei Dong, Cheng Guo, Jingyun Ren|2024|Org.Chem.Front.|11|336|doi:10.1039/D3QO01716H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h30tg
title: CCDC 2296815: Experimental Crystal Structure Determination

description: Related Article: Xiao-Tong Sun|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h5ckm
title: CCDC 2299070: Experimental Crystal Structure Determination

description: Related Article: Nea Baus Topić, Edi Topić, Luka Fotović, Vladimir Stilinović|2024|Cryst.Growth Des.|24|1214|doi:10.1021/acs.cgd.3c01189
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gqdrc
title: CCDC 2285653: Experimental Crystal Structure Determination

description: Related Article: Meng-Zhen Li, Zhao-Hong Chen, Sheng-Qian Hu, Jun-Si Zhou, Luan-Ying Ji, Xiao-Gang Chen|2023|J.Mater.Chem.C|11|15952|doi:10.1039/D3TC02893C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h1yl3
title: CCDC 2295785: Experimental Crystal Structure Determination

description: Related Article: Yujiao Hou, Peilin Han, Hao Li, Shixing Zhang, Mengge Qin, Nan Zhang, Bingbing Fu, Ruitao Mao, Suxiang Ge|2024|Dalton Trans.|53|1541|doi:10.1039/D3DT03650B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gq98s
title: CCDC 2285545: Experimental Crystal Structure Determination

description: Related Article: Yuichi Hirai, Anna Wrona-Piotrowicz, Janusz Zakrzewski, Magdalena Ciechańska, Takahito Ohmura, Takashi Takeda, Takayuki Nakanishi, Rémi Métivier, Clémence Allain|2024|J.Mater.Chem.C|12|1952|doi:10.1039/D3TC03968D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h0jpr
title: CCDC 2294424: Experimental Crystal Structure Determination

description: Related Article: Xianran Wang, Yuying Wu, Feng Gao, Youfu Wang|2024|New J.Chem.|48|3192|doi:10.1039/D3NJ05858A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.19633857
title: Additional file 5 of Identification of RNA-splicing factor Lsm12 as a novel tumor-associated gene and a potent biomarker in Oral Squamous Cell Carcinoma (OSCC)

description: Additional file 5: Table S4. Alternative splicing of genes induced by Lsm12 knockdown.
DOI: 10.6084/m9.figshare.8099657.v1
title: Additional file 8: of Mitochondrial genome and transcriptome analysis of five alloplasmic male-sterile lines in Brassica juncea

description: Table S7. Reference chloroplast genome list of Brassica. (XLSX 9â kb)
DOI: 10.6084/m9.figshare.19633851.v1
title: Additional file 3 of Identification of RNA-splicing factor Lsm12 as a novel tumor-associated gene and a potent biomarker in Oral Squamous Cell Carcinoma (OSCC)

description: Additional file 3: Table S2. Upregulated genes in the animal model of OSCC tumorigenesis.
DOI: 10.6084/m9.figshare.19633854
title: Additional file 4 of Identification of RNA-splicing factor Lsm12 as a novel tumor-associated gene and a potent biomarker in Oral Squamous Cell Carcinoma (OSCC)

description: Additional file 4: Table S3. Differentially expressed genes induced by Lsm12 knockdown.
DOI: 10.6084/m9.figshare.19633851
title: Additional file 3 of Identification of RNA-splicing factor Lsm12 as a novel tumor-associated gene and a potent biomarker in Oral Squamous Cell Carcinoma (OSCC)

description: Additional file 3: Table S2. Upregulated genes in the animal model of OSCC tumorigenesis.
DOI: 10.6084/m9.figshare.8099612
title: Additional file 1: of Mitochondrial genome and transcriptome analysis of five alloplasmic male-sterile lines in Brassica juncea

description: Table S1. Sequencing and assembling statistical result of each mitochondrial genome. (XLSX 10â kb)
DOI: 10.6084/m9.figshare.8099645
title: Additional file 6: of Mitochondrial genome and transcriptome analysis of five alloplasmic male-sterile lines in Brassica juncea

description: Table S5. Expressed ORFs in each mitochondrial genome and their location description. (XLSX 9â kb)
DOI: 10.6084/m9.figshare.19121987
title: Data for A novel method for evaluation of the spontaneous imbibition process in tight reservoir rocks: Mathematical model and experimental verification

description: S1 is NMR data for fully-saturated and centrifuged sample; S2 is the volume of imbibed water during imbibition experiment; S3 is NMR T2 distributions for imbibition saturated samples; S4 is the simulation result of imbibition model.
DOI: 10.6084/m9.figshare.8099636
title: Additional file 4: of Mitochondrial genome and transcriptome analysis of five alloplasmic male-sterile lines in Brassica juncea

description: Table S3. SNP number counts between alloplasmic mitochondrial genome and Brassica juncea mitochondrial genome. (XLSX 9â kb)
DOI: 10.6084/m9.figshare.8099645.v1
title: Additional file 6: of Mitochondrial genome and transcriptome analysis of five alloplasmic male-sterile lines in Brassica juncea

description: Table S5. Expressed ORFs in each mitochondrial genome and their location description. (XLSX 9â kb)
DOI: 10.6084/m9.figshare.8099654.v1
title: Additional file 7: of Mitochondrial genome and transcriptome analysis of five alloplasmic male-sterile lines in Brassica juncea

description: Table S6. Reference mitochondrial genome list of Brassica. (XLSX 9â kb)
DOI: 10.6084/m9.figshare.18585634.v1
title: Additional file 3 of Molecular mechanism of mulberry response to drought stress revealed by complementary transcriptomic and iTRAQ analyses

description: Additional file 3: Table S3. Statistics of DEPs VS. NDEGs comparison group members.
DOI: 10.6084/m9.figshare.11769768.v1
title: Additional file 1 of Differential expression of matrix metalloproteinases and miRNAs in the metastasis of oral squamous cell carcinoma

description: Additional file 1: The raw data of Microarray analysis.
DOI: 10.6084/m9.figshare.11769891.v3
title: Colistin-resistance gene <i>mcr</i> in clinical carbapenem-resistant <i>Enterobacteriaceae</i> strains in China, 2014–2019

description: To investigate whether introduction of colistin into the clinical settings selected colistin-resistant CRE, we performed molecular epidemiological study of 1868 CRE strains collected from different geographical locales in China during the period 2014–2019. 1755 (96.18%) isolates carried the carbapenemase genes <i>bla</i><sub>KPC</sub> and <i>bla</i><sub>NDM</sub>; 14 <i>Escherichia coli</i> isolates (0.75%) carrying <i>mcr-1</i> and <i>bla</i><sub>NDM</sub> (MCR-CREC) were also identified. Importantly, the number and relative prevalence of MCR-CREC isolates increased from 5 (0.41%) to 9 (1.38%) after introduction of polymyxin into clinical practice. Consistently, results of genetic analysis indicated that MCR-CREC strains collected before December 2017 were genetically diverse, yet those collected after that date exhibited more closely related genetic profiles, indicating that specific MCR-CREC strains were rapidly selected as a result of increased usage of colistin in clinical settings. The resistance level of MCR-CREC isolates to colistin increased after the introduction of polymyxin into clinical use with the MIC to colistin from &lt;2 mg/L in 80% strains to 2 mg/L in 100% strains. Further dissemination of MCR-CREC strains, which exhibit resistance to the last-line drugs of carbapenems and colistin, is expected to pose a severe threat to human health.
DOI: 10.5281/zenodo.10657580
title: Multilingual Historic Newspapers Metadata (1830-1940)

description: Multilingual Historic Newspapers (Le Figaro, The New York Herald, El Imparcial, La Stampa, Neue Hamburger Zeitung) metadata matching the article "An Industrial West? A Mixed-Methods Analysis of Newspapers Discourses about Technology over One Hundred and Ten Years (1830-1940)". Url: An Industrial West? A Quantitative Analysis of Newspapers Discourses about Technology over Ninety Years (1830-1940) (zenodo.org)

Folder contains:



Scripts

Processed data

Randomized sample of newspapers articles used for qualitative assessment
DOI: 10.5281/zenodo.10657581
title: Multilingual Historic Newspapers Metadata (1830-1940)

description: Multilingual Historic Newspapers (Le Figaro, The New York Herald, El Imparcial, La Stampa, Neue Hamburger Zeitung) metadata matching the article "An Industrial West? A Mixed-Methods Analysis of Newspapers Discourses about Technology over One Hundred and Ten Years (1830-1940)". Url: An Industrial West? A Quantitative Analysis of Newspapers Discourses about Technology over Ninety Years (1830-1940) (zenodo.org)

Folder contains:



Scripts

Processed data

Randomized sample of newspapers articles used for qualitative assessment
DOI: 10.6084/m9.figshare.18585634
title: Additional file 3 of Molecular mechanism of mulberry response to drought stress revealed by complementary transcriptomic and iTRAQ analyses

description: Additional file 3: Table S3. Statistics of DEPs VS. NDEGs comparison group members.
DOI: 10.5281/zenodo.10657587
title: w0waCDM_nonflat_3x2pt
DOI: 10.5281/zenodo.10657588
title: w0waCDM_nonflat_3x2pt
DOI: 10.6084/m9.figshare.11769891.v2
title: Colistin-resistance gene <i>mcr</i> in clinical carbapenem-resistant <i>Enterobacteriaceae</i> strains in China, 2014–2019

description: To investigate whether introduction of colistin into the clinical settings selected colistin-resistant CRE, we performed molecular epidemiological study of 1868 CRE strains collected from different geographical locales in China during the period 2014–2019. 1755 (96.18%) isolates carried the carbapenemase genes <i>bla</i><sub>KPC</sub> and <i>bla</i><sub>NDM</sub>; 14 <i>Escherichia coli</i> isolates (0.75%) carrying <i>mcr-1</i> and <i>bla</i><sub>NDM</sub> (MCR-CREC) were also identified. Importantly, the number and relative prevalence of MCR-CREC isolates increased from 5 (0.41%) to 9 (1.38%) after introduction of polymyxin into clinical practice. Consistently, results of genetic analysis indicated that MCR-CREC strains collected before December 2017 were genetically diverse, yet those collected after that date exhibited more closely related genetic profiles, indicating that specific MCR-CREC strains were rapidly selected as a result of increased usage of colistin in clinical settings. The resistance level of MCR-CREC isolates to colistin increased after the introduction of polymyxin into clinical use with the MIC to colistin from &lt;2 mg/L in 80% strains to 2 mg/L in 100% strains. Further dissemination of MCR-CREC strains, which exhibit resistance to the last-line drugs of carbapenems and colistin, is expected to pose a severe threat to human health.
DOI: 10.6084/m9.figshare.11769900.v3
title: Discovery of a subgenotype of human coronavirus NL63 associated with severe lower respiratory tract infection in China, 2018

description: Human coronavirus NL63 (HCoV-NL63) is primarily associated with common cold in children, elderly and immunocompromised individuals. Outbreaks caused by HCoV-NL63 are rare. Here we report a cluster of HCoV-NL63 cases with severe lower respiratory tract infection that arose in Guangzhou, China, in 2018. Twenty-three hospitalized children were confirmed to be HCoV-NL63 positive, and most of whom were hospitalized with severe pneumonia or acute bronchitis. Whole genomes of HCoV-NL63 were obtained using next-generation sequencing. Phylogenetic and single amino acid polymorphism analyses showed that this outbreak was associated with two subgenotypes (C3 and B) of HCoV-NL63. Half of patients were identified to be related to a new subgenotype C3. One unique amino acid mutation at I507 L in spike protein receptor binding domain (RBD) was detected, which segregated this subgenotype C3 from other known subgenotypes. Pseudotyped virus bearing the I507 L mutation in RBD showed enhanced entry into host cells as compared to the prototype virus. This study proved that HCoV-NL63 was undergoing continuous mutation and has the potential to cause severe lower respiratory disease in humans.
DOI: 10.6084/m9.figshare.18585631
title: Additional file 2 of Molecular mechanism of mulberry response to drought stress revealed by complementary transcriptomic and iTRAQ analyses

description: Additional file 2: Table S2. Statistics of NDEPs VS. DEGs comparison group members.