cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8118193
title: Dr. Duke's Phytochemicals and Ethnobotanical Ethnobot

description: <strong>Abstract:</strong> These Phytochemical and Ethnobotanical databases offer convenient search functionalities for plants, chemicals, bioactivity, and ethnobotany. They cover a wide range of plants and their chemical profiles, allowing users to browse and search in various user-oriented ways. This is a resource that caters to pharmaceutical, biomedical, and nutritional researchers, looking to improve the treatment of diseases in a natural way. The data originates from extensive compilations by a former Chief of USDA's Economic Botany Laboratory, specifically their Handbook of phytochemical constituents of GRAS herbs and other economic plants. Users can download a PDF or spreadsheet format containing chemical lists and their known activities. <strong>Instruction: </strong> Data was cleaned and duplicates were removed. <strong>Inspiration:</strong> The dataset was uploaded to UBRITE for "DGR_DEPOT” summer 2023 team project. <strong>Acknowledgements:</strong> Duke, J. A. (1992). Database of Biologically Active Phytochemicals and Their Activity. Boca Raton, Fla: CRC Press. ISBN 9780849336713. 183 pp. [Available on diskette with manual. https://www.crcpress.com/Database-of-Biologically-Active-Phytochemicals-... ] <strong>U-BRITE Last Updated July 5, 2023</strong>
description: U-BRITE location: /data/project/ubrite/drg-depot/Phytochem/
description: {"references": ["Duke, J. A. (1992). Database of Biologically Active Phytochemicals and Their Activity. Boca Raton, Fla: CRC Press. ISBN 9780849336713. 183 pp. [Available on diskette with manual.\u00a0https://www.crcpress.com/Database-of-Biologically-Active-Phytochemicals-...\u00a0]"]}
DOI: 10.5281/zenodo.8118194
title: Dr. Duke's Phytochemicals and Ethnobotanical Ethnobot

description: <strong>Abstract:</strong> These Phytochemical and Ethnobotanical databases offer convenient search functionalities for plants, chemicals, bioactivity, and ethnobotany. They cover a wide range of plants and their chemical profiles, allowing users to browse and search in various user-oriented ways. This is a resource that caters to pharmaceutical, biomedical, and nutritional researchers, looking to improve the treatment of diseases in a natural way. The data originates from extensive compilations by a former Chief of USDA's Economic Botany Laboratory, specifically their Handbook of phytochemical constituents of GRAS herbs and other economic plants. Users can download a PDF or spreadsheet format containing chemical lists and their known activities. <strong>Instruction: </strong> Data was cleaned and duplicates were removed. <strong>Inspiration:</strong> The dataset was uploaded to UBRITE for "DGR_DEPOT” summer 2023 team project. <strong>Acknowledgements:</strong> Duke, J. A. (1992). Database of Biologically Active Phytochemicals and Their Activity. Boca Raton, Fla: CRC Press. ISBN 9780849336713. 183 pp. [Available on diskette with manual. https://www.crcpress.com/Database-of-Biologically-Active-Phytochemicals-... ] <strong>U-BRITE Last Updated July 5, 2023</strong>
description: U-BRITE location: /data/project/ubrite/drg-depot/Phytochem/
description: {"references": ["Duke, J. A. (1992). Database of Biologically Active Phytochemicals and Their Activity. Boca Raton, Fla: CRC Press. ISBN 9780849336713. 183 pp. [Available on diskette with manual.\u00a0https://www.crcpress.com/Database-of-Biologically-Active-Phytochemicals-...\u00a0]"]}
DOI: 10.21227/b7eb-pj47
title: LSD4WSD : An Open Dataset for Wet Snow Detection with SAR Data and Physical Labelling

description: LSD4WSD: Learning SAR Dataset for Wet Snow Detection.The dataset can be found at : https://zenodo.org/record/8111485The aim of this dataset is to provide a basis for automatic learning to detect wet snow. It is based on Sentinel-1 SAR satellite images acquired between August 2020 and August 2021 over the French Alps. It consists of 487157 samples of size 16 by 16 by 9 for training and 3668 for testing. For each sample, the associated label is obtained using the Crocus physical model.The 9 channels are in the following order: Sentinel-1 polarimetric channels: VV, VH and the combination C: VV/VH,Topographical features: altitude, orientation, slopePolarimetric ratio with a reference summer image: VV/VVref, VH/VHref, C/Cref
DOI: 10.5281/zenodo.8121000
title: Memory kernel extraction and mean first-passage time for fast-folding proteins (Q - trajectories)

description: Fraction of native contacts reaction coordinate (Q) trajectories for the 8 proteins that appear in the Dalton et. al. PNAS 2023. For the original all-atom data from which the Q(t) were calculated, contact the group of David E. Shaw at Shaw Research (see the paper - K. Lindorff-Larsen, S. Piana, R. O. Dror, D. E. Shaw, How fast-folding proteins fold. Science 334, 517–520 (2011)) Data contains:<br> - Q(t) trajectories for 8 proteins <br> - Corresponding free energy profiles<br> <br> Example analysis codes (written in C++) are included for:<br> - Free energy calculation<br> - Mean first-passage times<br> - Velocity-velocity correlation function and position-force correlation function calculations, needed for memory kernel extraction<br> - Memory kernel extraction (see Ayaz et. al. PNAS 2021)
DOI: 10.5281/zenodo.8120999
title: Memory kernel extraction and mean first-passage time for fast-folding proteins (Q - trajectories)

description: Fraction of native contacts reaction coordinate (Q) trajectories for the 8 proteins that appear in the Dalton et. al. PNAS 2023. For the original all-atom data from which the Q(t) were calculated, contact the group of David E. Shaw at Shaw Research (see the paper - K. Lindorff-Larsen, S. Piana, R. O. Dror, D. E. Shaw, How fast-folding proteins fold. Science 334, 517–520 (2011)) Data contains:<br> - Q(t) trajectories for 8 proteins <br> - Corresponding free energy profiles<br> <br> Example analysis codes (written in C++) are included for:<br> - Free energy calculation<br> - Mean first-passage times<br> - Velocity-velocity correlation function and position-force correlation function calculations, needed for memory kernel extraction<br> - Memory kernel extraction (see Ayaz et. al. PNAS 2021)
DOI: 10.6084/m9.figshare.23635551
title: LobsterPACTempSummaryData.xlsx

description: Raw data associated with the publication titled " Changes in temperature alters the toxicity of polycyclic aromatic compounds to American lobster (Homarus americanus) larvae". For further information contact the lead author.
DOI: 10.6084/m9.figshare.23635623
title: Homogenous Side Channel State Machine Transition Data

description: All potential oracle values, representing all 256 potential permutations of state transitions, were executed 100 times. Firmware was generated for all w ∈ 1, 2, 4, 8, 16, 32, 64, 128 and traces were captured across all oracles and 100 repeated executions and stored for later analysis. Labeling incorporated both the number of operations executed within each state of the firmware and the oracle used to generate the trace as well as the order in the 100 samples to uniquely identify each trace. The resulting data was 5.8 GB for each firmware, resulting in a total data set measuring approximately 40 GB in size. The data have been cleaned and compressed to the data size of the file herein.
DOI: 10.5281/zenodo.8121086
title: Poisson dataset for CNN training

description: .mat files that were generated to train a convolutional physics-informed neural network.
DOI: 10.5281/zenodo.8121085
title: Poisson dataset for CNN training

description: .mat files that were generated to train a convolutional physics-informed neural network.
DOI: 10.6084/m9.figshare.23171099.v6
title: Supplementary Data

description: ATAC and RNA marker gene list and Peak Matrix
DOI: 10.5519/qd.h6kut8v6
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (51 records)
DOI: 10.5281/zenodo.6630477
title: Hydroclimatic and isotope data - Upper Selke

description: The data set contains .txt files of hydroclimatic timeseries and isotope (delta18O) data proposed in the work "Uncertainty in water transit time estimation with StorAge Selection functions and tracer data interpolation" by Borriero A., Kumar R., Nguyen T.V., Fleckenstein J.H. and Lutz S. ready to be submitted in the Hydrology and Earth System Sciences.
DOI: 10.5281/zenodo.6630476
title: Hydroclimatic and isotope data - Upper Selke

description: The data set contains .txt files of hydroclimatic timeseries and isotope (delta18O) data proposed in the work "Uncertainty in water transit time estimation with StorAge Selection functions and tracer data interpolation" by Borriero A., Kumar R., Nguyen T.V., Fleckenstein J.H. and Lutz S. accepted in Hydrology and Earth System Sciences.
DOI: 10.6084/m9.figshare.23616604
title: Supplementary Table 3 from Ancient <i>Y. pestis</i> genomes lack the virulence-associated Ypf<i>Φ</i> prophage present in modern pandemic strains

description: List of <i>Y. pestis</i> strains implemented in the phylogenetic analysis.
DOI: 10.6084/m9.figshare.23616604.v1
title: Supplementary Table 3 from Ancient <i>Y. pestis</i> genomes lack the virulence-associated Ypf<i>Φ</i> prophage present in modern pandemic strains

description: List of <i>Y. pestis</i> strains implemented in the phylogenetic analysis.
DOI: 10.6084/m9.figshare.23616607
title: Supplementary Table 1 from Ancient <i>Y. pestis</i> genomes lack the virulence-associated Ypf<i>Φ</i> prophage present in modern pandemic strains

description: Sample characteristics of the medieval individuals used for the analysis.
DOI: 10.6084/m9.figshare.23616607.v1
title: Supplementary Table 1 from Ancient <i>Y. pestis</i> genomes lack the virulence-associated Ypf<i>Φ</i> prophage present in modern pandemic strains

description: Sample characteristics of the medieval individuals used for the analysis.
DOI: 10.6084/m9.figshare.23616610
title: Supplementary Excel Sheet 1 from Ancient <i>Y. pestis</i> genomes lack the virulence-associated Ypf<i>Φ</i> prophage present in modern pandemic strains

description: This file contains results of the isotope analysis.
DOI: 10.6084/m9.figshare.23616610.v1
title: Supplementary Excel Sheet 1 from Ancient <i>Y. pestis</i> genomes lack the virulence-associated Ypf<i>Φ</i> prophage present in modern pandemic strains

description: This file contains results of the isotope analysis.
DOI: 10.17034/62f4a6d9-7ec0-43b3-b00a-c60834ae3e6a
title: Dataset for "Social workers and acquired brain injury: A systematic review of the current evidence-base"

description: This is a dataset containing details of 17 papers included in a manuscript titled "Social workers and acquired brain injury: A systematic review of the current evidence-base" to be published in PLOS ONE. Social work plays an important role in the assessment and treatment of people with acquired brain injury. Acquired brain injury is a complex and highly prevalent condition which can impact on cognitive, emotional and social domains. As acquired brain injury is a hidden disability it can be misdiagnosed or classified as another condition entirely. We sought to systematically explore the evidence base to examine how social workers have been prepared to work with their clients with brain injury. Employing six electronic databases (Social Policy & Practice, Web of Science, Scopus, PubMed, PsycINFO, CINAHL Plus) we reviewed 1071 papers. After applying eligibility criteria 17 papers were included in this review. We utilised standardised data extraction and quality appraisal tools to assess all included papers. Following appraisal, 9 papers were judged as possessing high methodological quality whilst 8 were judged as medium. Employing narrative synthesis, we identified four themes which captured the key findings of these papers. Themes were named as (i) advocacy and social work (ii) training and multidisciplinary team working (iii) inclusion of social networks and (iv) societal barriers. In order to meet their statutory responsibilities to practice safely, social workers must receive training in how to identify ABI and develop understanding of its consequences and subsequent need for provision. Social workers are also in a unique position to advocate for their clients and should make every effort to ensure their needs are met.
DOI: 10.6084/m9.figshare.23631750
title: F2 egg-to-adult viability

description: The egg-to-adult viability data from the F2 generation
DOI: 10.6084/m9.figshare.23631750.v1
title: F2 egg-to-adult viability

description: The egg-to-adult viability data from the F2 generation
DOI: 10.6084/m9.figshare.23631744.v1
title: F1 egg-to-adult viability

description: The egg-to-adult viability data from the F1 generation
DOI: 10.6084/m9.figshare.23631744
title: F1 egg-to-adult viability

description: The egg-to-adult viability data from the F1 generation
DOI: 10.6084/m9.figshare.23631741.v1
title: F0 egg-to-adult viability

description: The egg-to-adult viability data from the F0 generation across 5 dietry mediums
DOI: 10.6084/m9.figshare.23631741
title: F0 egg-to-adult viability

description: The egg-to-adult viability data from the F0 generation across 5 dietry mediums
DOI: 10.18430/m38d2z
title: X-ray diffraction data for the crystal Structure of a Metallo-beta-lactamase superfamily protein from Burkholderia cenocepacia (8D2Z)
DOI: 10.34740/kaggle/dsv/6090326
title: New York City Airbnb 2023, Public Data
DOI: 10.25921/tctw-am57
title: ME70 Water Column Sonar Data Collected During PC1902
DOI: 10.6084/m9.figshare.23635788
title: Simulation files from Heterogeneous ATP patterns in microvascular networks

description: These files can be used to run simulations and post processing about blood flow and ATP signaling in microcirculation.
DOI: 10.6084/m9.figshare.23635788.v1
title: Simulation files from Heterogeneous ATP patterns in microvascular networks

description: These files can be used to run simulations and post processing about blood flow and ATP signaling in microcirculation.
DOI: 10.57745/ejsbmx
title: Buire_AirRail_Demand.zip

description: :unav
DOI: 10.5517/ccdc.csd.cc2flbx9
title: CCDC 2251961: Experimental Crystal Structure Determination

description: Related Article: Necmi Dege|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7878082
title: Integrated multi-omics analysis of early lung adenocarcinoma links tumor biological features with predicted indolence or aggressiveness

description: This is a collection of datasets presented in the manuscript "Multi-omics data analysis identifies correlations between tumor biology features and predicted behaviors in early lung adenocarcinoma". This study provides a comprehensive profiling of LUAD indolence and aggressiveness at the biological bulk and single cell levels, as well as at the clinical and radiomics levels. This hypothesis generating study uncovers several potential future research avenues. It also highlights the importance and power of data integration to improve our systemic understanding of LUAD and to help reduce the gap between basic science research and clinical practice.
DOI: 10.5281/zenodo.7878081
title: Integrated multi-omics analysis of early lung adenocarcinoma links tumor biological features with predicted indolence or aggressiveness

description: This is a collection of datasets presented in the manuscript "Multi-omics data analysis identifies correlations between tumor biology features and predicted behaviors in early lung adenocarcinoma". This study provides a comprehensive profiling of LUAD indolence and aggressiveness at the biological bulk and single cell levels, as well as at the clinical and radiomics levels. This hypothesis generating study uncovers several potential future research avenues. It also highlights the importance and power of data integration to improve our systemic understanding of LUAD and to help reduce the gap between basic science research and clinical practice.
DOI: 10.25573/serc.21298338
title: Dataset: National total ecosystem carbon stock for the mangroves of Belize

description: This dataset release presents the first national total ecosystem carbon stock values for the mangrove of Belize associated with the published manuscript, “Belize Blue Carbon: Establishing a national carbon stock estimate for mangrove ecosystems”. The Belize Blue Carbon project was a collaborative approach to comprehensive nationwide sampling of a range of mangrove ecotypes for ten mangrove sites and one seagrass sampling site. Sampling occurred in September 2021 and March 2022 along the full length of the Belizean coastline and offshore cayes, with species, distribution, hydrology, etc., varying between all sites for the highest level of representative sampling possible. Each site except two had two transects of six plots each [Hicks Caye had one transect for training purposes, and New River’s second transect only had three plots]. At the plot level (n = 111), almost 4,000 mangrove biomass measurements are condensed for average height, canopy width, and DBH, and also live, dead, and total biomass carbon, along with water quality parameters and site descriptions. At the sample level (n = 1356 for mangroves, n = 21 for seagrass), sediment core data are presented with loss on ignition, bulk density, and carbon values. These data supported the nationally determined contribution (NDC) update of Belize, and will be used to inform the country’s mangrove protection and restoration commitments.
DOI: 10.25573/serc.21298338.v2
title: Dataset: National total ecosystem carbon stock for the mangroves of Belize

description: This dataset release presents the first national total ecosystem carbon stock values for the mangrove of Belize associated with the published manuscript, “Belize Blue Carbon: Establishing a national carbon stock estimate for mangrove ecosystems”. The Belize Blue Carbon project was a collaborative approach to comprehensive nationwide sampling of a range of mangrove ecotypes for ten mangrove sites and one seagrass sampling site. Sampling occurred in September 2021 and March 2022 along the full length of the Belizean coastline and offshore cayes, with species, distribution, hydrology, etc., varying between all sites for the highest level of representative sampling possible. Each site except two had two transects of six plots each [Hicks Caye had one transect for training purposes, and New River’s second transect only had three plots]. At the plot level (n = 111), almost 4,000 mangrove biomass measurements are condensed for average height, canopy width, and DBH, and also live, dead, and total biomass carbon, along with water quality parameters and site descriptions. At the sample level (n = 1356 for mangroves, n = 21 for seagrass), sediment core data are presented with loss on ignition, bulk density, and carbon values. These data supported the nationally determined contribution (NDC) update of Belize, and will be used to inform the country’s mangrove protection and restoration commitments.
DOI: 10.25573/serc.21298338.v1
title: Dataset: National total ecosystem carbon stock for the mangroves of Belize

description: This dataset release presents the first national total ecosystem carbon stock values for the mangrove of Belize associated with the published manuscript, “Belize Blue Carbon: Establishing a national carbon stock estimate for mangrove ecosystems”. The Belize Blue Carbon project was a collaborative approach to comprehensive nationwide sampling of a range of mangrove ecotypes for ten mangrove sites and one seagrass sampling site. Sampling occurred in September 2021 and March 2022 along the full length of the Belizean coastline and offshore cayes, with species, distribution, hydrology, etc., varying between all sites for the highest level of representative sampling possible. Each site except two had two transects of six plots each [Hicks Caye had one transect for training purposes, and New River’s second transect only had three plots]. At the plot level (n = 111), almost 4,000 mangrove biomass measurements are condensed for average height, canopy width, and DBH, and also live, dead, and total biomass carbon, along with water quality parameters and site descriptions. At the sample level (n = 1356 for mangroves, n = 21 for seagrass), sediment core data are presented with loss on ignition, bulk density, and carbon values. These data supported the nationally determined contribution (NDC) update of Belize, and will be used to inform the country’s mangrove protection and restoration commitments.
DOI: 10.6084/m9.figshare.23635890.v1
title: Data used in statistical analyses

description: Data used in statistical analyses on EMG and kinematic metrics during suckling
DOI: 10.6084/m9.figshare.23635890
title: Data used in statistical analyses

description: Data used in statistical analyses on EMG and kinematic metrics during suckling
DOI: 10.6084/m9.figshare.23284460
title: Semrau dataset : scATAC + scRNA tables preprocessed (paired + aligned)

description: The table named *_aligned_cells.tsv correspond to the tables after computationally pairing of the cells from both modalities (scRNA and scATAC). Since the initial datasets Semrau et al., 2017 didnt contain scATAC-seq data, we use the one of Duren et al., 2018. This is why the scATAC-seq data unpaired is named "mESC_Duren_scATAC_binarized.tsv".
DOI: 10.5517/ccdc.csd.cc2ffm4n
title: CCDC 2247411: Experimental Crystal Structure Determination

description: Related Article: Brendan F. Abrahams, Christopher J. Commons, Timothy A. Hudson|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.23284454
title: Duren dataset : scATAC + scRNA tables preprocessed (unpaired + aligned)

description: The table named *_aligned_cells.tsv correspond to the tables after computationally pairing of the cells from both modalities (scRNA and scATAC).
DOI: 10.57967/hf/0862
title: frenchQA
DOI: 10.6084/m9.figshare.23284367
title: Chen dataset : scATAC + scRNA tables preprocessed (paired)

description: Folder containing both scATAC-seq accessibility matrice and scRNA-seq count matrice for the dataset
DOI: 10.6084/m9.figshare.23284364
title: Liu dataset : scATAC + scRNA tables preprocessed (paired)

description: Folder containing both scATAC-seq accessibility matrice and scRNA-seq count matrice for the dataset
DOI: 10.34740/kaggle/dsv/6090437
title: Phishing Email Detection
DOI: 10.5281/zenodo.8087959
title: Serratia fonticola EBS19 Whole genome sequence data fasta file annotated

description: Whole genome sequence data of <em>Serratia fonticola</em> <strong>EBS19 </strong>strain.
description: EBS19 strain isolated from Ortaca belongs to the partnership of the authors.
DOI: 10.5281/zenodo.8087958
title: Serratia fonticola EBS19 Whole genome sequence data fasta file annotated

description: Whole genome sequence data of <em>Serratia fonticola</em> <strong>EBS19 </strong>strain.
description: EBS19 strain isolated from Ortaca belongs to the partnership of the authors.
DOI: 10.5281/zenodo.7946763
title: What rationales drive architectural decisions? An empirical inquiry - Additional material

description: Contains additional files for the paper "What rationales drive architectural decisions? An empirical inquiry" submitted for review to the ECSA 2023 Research Track.
DOI: 10.5281/zenodo.7946764
title: What rationales drive architectural decisions? An empirical inquiry - Additional material

description: Contains additional files for the paper "What rationales drive architectural decisions? An empirical inquiry" submitted for review to the ECSA 2023 Research Track.