cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3886/e193186v1
title: Co-Designing Auditory Navigation Solutions for Traveling as a Blind Individual During The COVID-19 Pandemic

description: A group co-design was held in March 2021 with six blind and visually impaired individuals (BVIs) from the US. Participants were asked to discuss problems related to travel during the COVID-19 pandemic and make recommendations for possible solutions. Two probes (prototypes) of a non-visual neighborhood travel map, and a non-visual COVID-19 choropleth map (a map using colors or sounds over each state to represent different values) of COVID-19 state data, were shown to participants for inspiration. Results were that participants revealed the mostly negative impacts COVID-19 had on feeling greater risk when going out, traveling, interactions with strangers, communication, navigating to changed familiar environments, and wearing masks. Participants gravitated towards the need for information the probes provided, and made a number of observations and recommendations for improvement. They wanted more detailed geo-referenced COVID-19 data, including by county, information related to voting, a mobile app, and more detailed building information, such as doors on the travel map.<br>This data includes the initial set of codes created by the coders, intercoder reliability checks, final codes, categorized codes, category context and descriptions, themes, and participant demographic data.<br>The Excel file is uploaded here, but a view only Google Sheets version can be accessed at:<br>https://docs.google.com/spreadsheets/d/1zpGuL9cRhokzfhctgo-3ZjoDcC7HG801WRo4OgBO8_w/edit?usp=sharing<br>Make a copy of this google sheet and entering values into the top row of the "Filter" sheet will filter values by those keywords.
DOI: 10.18739/a25d8ng6x
title: Firn temperature time series to 100 m depth at two sites along the west Expéditions Glaciologiques Internationales au Groenland (EGIG) line, Greenland 2019-2021

description: This archive contains firn temperature data collected at two sites in the western Greenland Ice Sheet percolation zone. The sites, T3 and Crawford Point (CP), are located along the Expéditions Glaciologiques Internationales au Groenland (EGIG) line. The data are time series of firn temperature measured in boreholes drilled to 100 m depth. The boreholes were drilled by hot water methods. The CP measurements span the period June to August, 2019. This borehole was drilled in 2018, so the temperature profile had fully recovered from the drilling thermal disturbance by the start of the time series. The T3 data span the period June 2019 to September 2021. This borehole was drilled in June 2019, so the time series of measurements includes the thermal recovery from drilling (several months) and two subsequent years. The dataset was collected as part of projects funded by the U.S. National Science Foundation. These measurements are associated with additional datasets collected as part of a NSF Arctic Observing Network project, and include measurements at multiple sites on the EGIG line of firn temperature and firn density/ice content.
DOI: 10.3886/e193191
title: Data and replication files for "Technical change and the postwar slowdown in Soviet economic growth in a long run perspective, 1885-2019"

description: Data and replication files for "Technical change and the postwar slowdown in Soviet economic growth in a long run perspective, 1885-2019"
DOI: 10.3886/e193191v1
title: Data and replication files for "Technical change and the postwar slowdown in Soviet economic growth in a long run perspective, 1885-2019"

description: Data and replication files for "Technical change and the postwar slowdown in Soviet economic growth in a long run perspective, 1885-2019"
DOI: 10.3886/e193191v2
title: Data and replication files for "Technical change and the postwar slowdown in Soviet economic growth in a long run perspective, 1885-2019"

description: Data and replication files for "Technical change and the postwar slowdown in Soviet economic growth in a long run perspective, 1885-2019"
DOI: 10.18739/a21n7xp2s
title: Continuous water vapor isotopic (δ18O, δD, and d-excess) observations from 2021 Arctic cruise on USCGC Healy icebreaker

description: The dataset presented here contains continuous water vapor isotopic (δ18O, δD, deuterium excess) measurements during the autumn 2021 cruise on the US Coast Guard Cutter (USCGC) Healy. The cruise (HLY21TD, HLY2101) includes transiting coastal Alaska, through the Northwest Passage and Canadian Archipelago, and transects of Baffin Bay, the Labrador Sea, and coastal West Greenland. Water vapor isotopic measurements were collected continuously from the bow of the ship (11 m above the sea surface) along the cruise track between 31 August through 07 October 2021. These vapor measurements are directly related to a similar dataset of seawater isotopic observations during this same cruise. With relatively water vapor isotopic measurements over Arctic ocean waters, this dataset provides important observations of ocean-atmosphere interactions in regions where significant sea ice loss has occurred. These observations allow for the measurement of evaporative fluxes and tracing of this new moisture from its point of origin to sites downwind as the moisture is transported around the Arctic.
DOI: 10.25345/c5pr7n470
title: MassIVE MSV000092625 - GNPS Chromatographic data of two chemotypes of lippia alba CGMS
title: Analise cromatogaficas de amostras de lippia alba por CGMS
DOI: 10.6084/m9.figshare.22700065.v1
title: Ocelli Tutorial 4: Exploring unimodal data

description: Data for Tutorial 4 of Ocelli, available at https://ocelli.readthedocs.io. Includes processed data from the Gene Expression Omnibus under accession numbers GSE132188 [1] and GSE115943 [2]. [1] Bastidas-Ponce A, Tritschler S, Dony L, Scheibner K et al. Comprehensive single cell mRNA profiling reveals a detailed roadmap for pancreatic endocrinogenesis. <em>Development</em> 2019 Jun 17;146(12). [2] Schiebinger G, Shu J, Tabaka M, Cleary B et al. Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming. <em>Cell</em> 2019 Feb 7;176(4):928-943.e22.
DOI: 10.5281/zenodo.5523788
title: Draft de novo genome assemblies of a male and female Amphibolurus muricatus (jacky dragon)

description: • AmpMurF_1.0.fa.tar.gz: de novo nuclear genome assembly of a female <em>A. muricatus</em><br> • AmpMurM_1.0.fa.tar.gz: de novo nuclear genome assembly of a male <em>A. muricatus </em> <strong>Methods</strong> Raw 10X data were assembled with Supernova v2.1.1 (Weisenfeld et al. 2017) and a FASTA file was generated using the ‘pseudohap style’ option in Supernova mkoutput. All female (~450 M) and male (~550 M) <em>A. muricatus</em> read pairs were utilized (female sequencing depth ~50.3; male, ~47.8×). The resulting assembly was further scaffolded with ARKS v1.0.3 (Coombe et al. 2018), reusing the 10X reads, and the companion LINKS program (v1.8.7) (Warren et al. 2015). ARKS employs a k-mer approach to map linked barcodes to the contigs in the initial Supernova assembly to generate a scaffold graph with estimated distances for LINKS input. Next, RNA-seq reads (from brain, ovary, and testis; see below) were filtered (i.e., 'cleaned') to remove adapters and low-quality reads using Flexbar v3.4.0 (Roehr et al. 2017; Dodt et al. 2012) and used to further re-scaffold the assembly with P_RNA_scaffolder (Zhu et al. 2018). The default Flexbar settings discards all reads with any uncalled bases. A final round of scaffolding was performed on the resulting assembly using L_RNA_scaffolder (Xue et al. 2013). We used GapCloser v1.12 (part of SOAPdenovo2) (Luo et al. 2012) to fill gaps in the assembly. GapCloser was run using the parameter ‘-l 150’) and ‘clean’ 10X Genomics reads PE reads. <strong>References</strong> Coombe, L., J. Zhang, B.P. Vandervalk, J. Chu, S.D. Jackman et al., 2018 ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers. BMC Bioinformatics 19 (1):234. Dodt, M., J.T. Roehr, R. Ahmed, and C. Dieterich, 2012 FLEXBAR-Flexible Barcode and Adapter Processing for Next-Generation Sequencing Platforms. Biology (Basel) 1 (3):895-905. Luo, R., B. Liu, Y. Xie, Z. Li, W. Huang et al., 2012 SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience 1 (1):18. Roehr, J.T., C. Dieterich, and K. Reinert, 2017 Flexbar 3.0 - SIMD and multicore parallelization. Bioinformatics 33 (18):2941-2942. Warren, R.L., C. Yang, B.P. Vandervalk, B. Behsaz, A. Lagman et al., 2015 LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads. Gigascience 4:35. Weisenfeld, N.I., V. Kumar, P. Shah, D.M. Church, and D.B. Jaffe, 2017 Direct determination of diploid genome sequences. Genome Res 27 (5):757-767. Xue, W., J.T. Li, Y.P. Zhu, G.Y. Hou, X.F. Kong et al., 2013 L_RNA_scaffolder: scaffolding genomes with transcripts. BMC Genomics 14:604. Zhu, B.H., J. Xiao, W. Xue, G.C. Xu, M.Y. Sun et al., 2018 P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads. BMC Genomics 19 (1):175.
DOI: 10.5281/zenodo.8224031
title: Gene models for Populus nigra var italica

description: The current gene model prediction generated as part of the ongoing project P. nigra cv. ‘italica’ reference genome project (ENA: PRJEB44889, short descriptions are available of these annotations files with their available versions) was improved by combining illumina short reads and nanopore isoseq long reads from transcriptome libraries of three replicates using PASA (Program to Assemble Spliced Alignments) (Haas et al., 2003). This tool exploits spliced alignments of expressed transcript sequences to automatically create model gene structures, identifying and classifying all splicing variations supported by the transcript alignments obtained.
DOI: 10.6073/pasta/ac34383e5bea5c1ef6d7ae7c99595700
title: North Temperate Lakes LTER: Physical and Chemical Limnology of Lake Kegonsa and Lake Waubesa 1994 - current

description: Physical and chemicals parameters of two Madison-area lakes in the Yahara chain not included as core NTL-LTER study lakes. Parameters include intermittently sampled water temperature, dissolved oxygen, ph, total alkalinity, chloride and sulfate. Nutrient data has been collected since 2015. Number of sites: 2.
DOI: 10.6084/m9.figshare.22700065.v2
title: Ocelli Tutorial 4: Exploring unimodal data

description: Data for Tutorial 4 of Ocelli, available at https://ocelli.readthedocs.io. Includes processed data from the Gene Expression Omnibus under accession numbers GSE132188 [1] and GSE115943 [2]. [1] Bastidas-Ponce A, Tritschler S, Dony L, Scheibner K et al. Comprehensive single cell mRNA profiling reveals a detailed roadmap for pancreatic endocrinogenesis. <em>Development</em> 2019 Jun 17;146(12). [2] Schiebinger G, Shu J, Tabaka M, Cleary B et al. Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming. <em>Cell</em> 2019 Feb 7;176(4):928-943.e22.
DOI: 10.18112/openneuro.ds003708.v1.0.3
title: Basis profile curve identification to understand electrical stimulation effects in human brain networks
DOI: 10.25345/c5k06xb35
title: MassIVE MSV000092626 - Ketogenic diet administration later in life improves memory and regulates the synaptic cortical proteome through the cAMP/PKA signaling pathway in aging mice
title: Aging is a complex biological process that compromises brain function and neuronal network activity, leading to cognitive decline and synaptic dysregulation. In recent years, a cyclic Ketogenic Diet (KD) has emerged as a potential treatment to ameliorate cognitive decline by improving memory in aged mice after long-term administration. However, whether short-term cyclic KD administration later in life preserves memory has not been addressed in detail. Accordingly, here we investigated how a short-term cyclic KD starting at 20-23 months-old regulates brain function of aged mice. Behavioral testing and long-term potentiation (LTP) recordings revealed that a cyclic KD improves working memory and hippocampal LTP in 24-27 months-old mice after 16 weeks of treatment. Moreover, the diet also promotes higher dendritic arborization complexity and dendritic spine density in the prefrontal cortex. Furthermore, to elucidate the molecular mechanisms underlying the memory improvements elicited by a cyclic KD, cortical synaptosomes of aged mice fed with this diet for 1 year were analyzed by mass spectrometry. Bioinformatics analysis revealed that long-term cyclic KD administration predominantly modulates the presynaptic compartment by inducing changes in the cAMP/PKA signaling pathway, the synaptic vesicle cycle and the actin/microtubule cytoskeleton. To test these findings in vivo, synaptic proteins from cortices of 24-27 month-old mice fed with control or cyclic KD for 16 weeks were analyzed by western blot. Interestingly, increased Brain Derived Neurotrophic Factor abundance, MAP2 phosphorylation and PKA activity were observed. Overall, we show that a cyclic KD regulates brain function and memory even when it is administered at late mid-life and significantly triggers several molecular features of long-term administration, including the PKA signaling pathway and cytoskeleton dynamics, thus promoting synaptic plasticity at advanced age.
DOI: 10.6084/m9.figshare.22700065.v3
title: Ocelli Tutorial 4: Exploring unimodal data

description: Data for Tutorial 4 of Ocelli, available at https://ocelli.readthedocs.io. Includes processed data from the Gene Expression Omnibus under accession numbers GSE132188 [1] and GSE115943 [2]. [1] Bastidas-Ponce A, Tritschler S, Dony L, Scheibner K et al. Comprehensive single cell mRNA profiling reveals a detailed roadmap for pancreatic endocrinogenesis. <em>Development</em> 2019 Jun 17;146(12). [2] Schiebinger G, Shu J, Tabaka M, Cleary B et al. Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming. <em>Cell</em> 2019 Feb 7;176(4):928-943.e22.
DOI: 10.7298/meww-pd29
title: Data from: Transboundary effects from idealized regional geoengineering
DOI: 10.5281/zenodo.8122343
title: Data for: Design of stimulus-responsive two-state hinge proteins

description: Supplementary information for <strong>Design of stimulus-responsive two-state hinge proteins: </strong>Design scripts, design models, and aw DEER data.
DOI: 10.5281/zenodo.8122342
title: Data for: Design of stimulus-responsive two-state hinge proteins

description: Supplementary information for <strong>Design of stimulus-responsive two-state hinge proteins: </strong>Design scripts, design models, and aw DEER data.
DOI: 10.25345/c5f766h9s
title: MassIVE MSV000092627 - Multi-Omic Evidence of Brain Region Specific APOE Genotype Perturbations in Alzheimer's Disease
title: Simultaneous extraction of proteins and lipids from human frontal cortex and cerebellum brain tissue was performed using the MPLEx procedure for both control and Alzheimer's disease patients. The isolated proteins were then reduced, alkylated, tryptically digested and evaluated with LC-IMS-MS. The proteomics data was matched to an AMT tag database created from pooled and fractionated samples for peptide identification. The extracted lipids were assessed with both LC-MS/MS and LC-IMS-MS to study isomer differences. The lipids were identified using LIQUID software.
DOI: 10.34740/kaggle/dsv/6272326
title: Youtube Trending Video - Taiwan & Hong Kong
DOI: 10.25345/c59g5gq5n
title: MassIVE MSV000092628 - GNPS-CG-Chromatographic data of two chemotypes of lippia alba
title: Chromatographic data of compounds produced by two chemotypes of Lippia alba. Analysis performed in CG-MS.
DOI: 10.5281/zenodo.8213321
title: Bone marrow mesenchymal stem cell-derived exosomal microRNA regulates microglial polarization

description: Bone marrow mesenchymal stem cell-derived exosomal microRNA regulates microglial polarization
DOI: 10.5281/zenodo.8213320
title: Bone marrow mesenchymal stem cell-derived exosomal microRNA regulates microglial polarization

description: Bone marrow mesenchymal stem cell-derived exosomal microRNA regulates microglial polarization
DOI: 10.5281/zenodo.7812696
title: Concentrations and isotope ratios of N2O and related substrates with hydrographical data obtained in the eastern Indian Ocean in November, 2018

description: A spreadsheet that includes data presented in the following publication. Sakae Toyoda, Kotaro Terajima, Naohiro Yoshida, Chisato Yoshikawa, Akiko Makabe, Fuminori Hashihama, and Hiroshi Ogawa, Extensive Accumulation of Nitrous Oxide in the Oxygen Minimum Zone in the Bay of Bengal, Global Biogeochemical Cycles, accepted for publication on August 8, 2023.
DOI: 10.57841/casdc.0001780
title: 类石墨非晶碳膜与不同硅油构建的固-油协同润滑研究
DOI: 10.5281/zenodo.8201660
title: Dataset for "The magnetized (2+1)-dimensional Gross-Neveu model at finite density"

description: We perform a lattice study of the (2+1)-dimensional Gross-Neveu model in a background magnetic field <em>B</em> and at non-zero chemical potential <em>μ</em>. The complex-action problem arising in our simulations using overlap fermions is under control. For <em>B</em>=0 we observe a first-order phase transition in <em>μ</em> even at non-vanishing temperatures. Our main finding, however, is that the rich phase structure found in the limit of infinite flavor number <em>N</em>f is washed out by the fluctuations present at <em>N</em>f=1. We find no evidence for inverse magnetic catalysis, i.e., the decrease of the order parameter of chiral symmetry breaking with <em>B</em> for <em>μ</em> close to the chiral phase transition. Instead, the magnetic field tends to enhance the breakdown of chiral symmetry for all values of <em>μ</em> below the transition. Moreover, we find no trace of spatial inhomogeneities in the order parameter. We briefly comment on the potential relevance of our results for QCD. If you use this data, please cite the corresponding paper:<br> https://doi.org/10.48550/arXiv.2304.14812 (or better the not-yet-existing published version)
description: This work has been funded by the Deutsche Forschungsgemein- schaft (DFG) under Grant No. 406116891 within the Research Training Group RTG 2522/1. The work of J. J. L. was supported by the UKRI Science and Technology Facilities Council (STFC) Research Software Engineering Fellowship EP/V052489/1 and by the Supercomputing Wales project, which is part-funded by the European Regional Development Fund (ERDF) via Welsh Govern- ment. The simulations were performed on resources of the Friedrich Schiller University in Jena supported in part by the DFG Grants INST 275/334-1 FUGG and INST 275/363-1 FUGG, as well as on the Swansea University SUNBIRD cluster (part of the Supercomputing Wales project). The Swansea University SUNBIRD system is part funded by the European Regional Development Fund (ERDF) via Welsh Government.
DOI: 10.5281/zenodo.8201661
title: Dataset for "The magnetized (2+1)-dimensional Gross-Neveu model at finite density"

description: We perform a lattice study of the (2+1)-dimensional Gross-Neveu model in a background magnetic field <em>B</em> and at non-zero chemical potential <em>μ</em>. The complex-action problem arising in our simulations using overlap fermions is under control. For <em>B</em>=0 we observe a first-order phase transition in <em>μ</em> even at non-vanishing temperatures. Our main finding, however, is that the rich phase structure found in the limit of infinite flavor number <em>N</em>f is washed out by the fluctuations present at <em>N</em>f=1. We find no evidence for inverse magnetic catalysis, i.e., the decrease of the order parameter of chiral symmetry breaking with <em>B</em> for <em>μ</em> close to the chiral phase transition. Instead, the magnetic field tends to enhance the breakdown of chiral symmetry for all values of <em>μ</em> below the transition. Moreover, we find no trace of spatial inhomogeneities in the order parameter. We briefly comment on the potential relevance of our results for QCD. If you use this data, please cite the corresponding paper:<br> https://doi.org/10.48550/arXiv.2304.14812 (or better the not-yet-existing published version)
description: This work has been funded by the Deutsche Forschungsgemein- schaft (DFG) under Grant No. 406116891 within the Research Training Group RTG 2522/1. The work of J. J. L. was supported by the UKRI Science and Technology Facilities Council (STFC) Research Software Engineering Fellowship EP/V052489/1 and by the Supercomputing Wales project, which is part-funded by the European Regional Development Fund (ERDF) via Welsh Govern- ment. The simulations were performed on resources of the Friedrich Schiller University in Jena supported in part by the DFG Grants INST 275/334-1 FUGG and INST 275/363-1 FUGG, as well as on the Swansea University SUNBIRD cluster (part of the Supercomputing Wales project). The Swansea University SUNBIRD system is part funded by the European Regional Development Fund (ERDF) via Welsh Government.
DOI: 10.25919/ta9d-b696
title: Parkes observations for project P885 semester 2023APRS_10

description: We request a continued modest monitoring cadence of once every 10 days for two radio magnetars, to track their rotation, flux density, and polarisation. 1E 1547.0-5408 has just suffered a 'hiccup' in radiative properties as well as in its rotation, and the near-term response to this event remains unclear. Swift J1818.0-1607 remains quite dynamic, and the unique UWL capabilities promise new opportunities to probe still mysterious radio emission mechanisms in magnetars. We will observe XTE J1810-197 and PSR J1622-4950, which has just ceased emission, less frequently. The overall request is 18 hours.
DOI: 10.25345/c55t3g93r
title: MassIVE MSV000092629 - Calcium-dependent Ng-CaM pull down proteomics in D3 cell
title: Ng-CaM pull down in response to calcium concentration.
DOI: 10.25919/14t5-cn90
title: Parkes observations for project P1189 semester 2023APRS_04

description: The solar wind and space weather events have a crucial influence on the solar system, and can present a hazard to space and Earth-based technologies. Understanding the origins of the solar wind and space weather is therefore crucial, so that we can better understand how these events are driven, and to improve space weather prediction efforts. In particular, magnetic structures such as coronal holes, helmet streamers, and prominences in the lower corona are thought to be crucial drivers of the winds and coronal mass ejections (CMEs). However, there are very few observational constraints on the solar wind and space weather events at low solar altitudes (&lt; 20 solar radii), as this region is inaccessible to space probes. In this proposal, we seek to monitor a set of pulsars as they pass within 5.7 degrees of the Sun. We will use the UWL receiver on the Parkes Radio Telescope to make precision measurements of the dispersive group delay and Faraday rotation of the pulses. This will enable us to probe the densities and magnetic fields of the coronal structures driving the wind, and probe $2^{+3}_{-1}$ CMEs as they pass by the pulsars serendipitously. We will tie this information together with complementary efforts to probe the solar wind via interplanetary scintillation, constraints from space probes, and simulations. This will give us an exciting opportunity to form a holistic picture of the solar wind and space weather.
DOI: 10.25442/hku.23667204
title: Supporting Data for "The Mediating Roles of Emotional Reactivity and Regulation in the Relationship Between Insomnia, Depression, and Anxiety"

description: This dataset contain data from the student's thesis titled "The Mediating Roles of Emotional Reactivity and Regulation in the Relationship Between Insomnia, Depression, and Anxiety". It consists of two sub-datasets: the first one is a daily study of two weeks with 60 participants. The second one is a longitudinal study of 924 participants and the data was collected over three months, once per month. Both datasets contained the data of the sleep and mood disturbances, and emotional reactivity and regulation of the participants. <br>