cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14991531.v1
title: Sawyer Mill Dam Removal Reservoir Response Ground Field Photos

description: This is a collection of field photos from 2019 and 2020 that illustrate pre-/post-upper dam removal conditions of the upper impoundment (Bellamy Reservoir, Dover, NH, USA) from the ground, many of which are from seasons not depicted in the orthomosaics used in the reservoir response manuscript. They are provided here to provide additional context for the changes observed using the drone and give the reader a sense of the Bellamy Reservoir from assumingly a more familiar perspective from the ground for most readers than the aerial perspective provided in the drone orthomosaics. Most of the photos were taken by Alexandra Evans via her cell phone’s camera, with one contributed by Zachary Jablons. Some photos are taken from the same location and perspective, but many of these photos were taken to simply supplement the drone study for qualitative purposes and were taken mostly opportunistically during fieldwork. Panoramas were made with Microsoft Image Composite Editor. Photograph dates can be found in the EXIF data of each file. Descriptions of the photos can be found in the Supplementary Material of the reservoir response manuscript.<br>These materials were made using resources from an NSF EPSCoR funded project “RII Track-2 FEC: Strengthening the scientific basis for decision-making about dams: Multi-scale, coupled-systems research on ecological, social, and economic trade-offs” (a.k.a. "Future of Dams"). Support for this project is provided by the National Science Foundation’s Research Infrastructure Improvement NSF #IIA-1539071. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.<br>
DOI: 10.6084/m9.figshare.25286227.v1
title: The anonymized dataset for replicating our study findings.

description: This is the dataset for replicating the study findings of "The associations of <i>IGF2</i>, <i>IGF2R</i> and <i>IGF2BP2</i> gene polymorphisms with gestational diabetes mellitus: a case-control study". This dataset contains relevant information for 1703 pregnant women [835 gestational diabetes mellitus (GDM) and 868 Non-GDM] recruited in this case-control study from January 15, 2018 to March 31, 2019 in China. Relevant information such as OGTT0h, OGTT1h, OGTT2h, age, education, height, weight, BMI, gravidity, parity, family history of diabetes, and genotyping of candidate SNPs (<i>IGF2</i><i> </i>rs680, <i>IGF2R</i> rs416572, <i>IGF2BP2 </i>rs4402960, rs1470579, rs11705701, rs6777038, rs16860234, rs7651090) of the patients were recored.
DOI: 10.6084/m9.figshare.28881092.v1
title: baza danych.xlsx

description: Opis
DOI: 10.15468/dl.8zuygu
title: Occurrence Download

description: A dataset containing 4354 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Protodeltote pygarga (Hufnagel, 1766)"
 ]
}

 The dataset includes 4354 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009441-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.16822879.v1
title: Histopathology of corn plants infected by endophytic fungi

description: The data presents the histological responses of corn plants to tissue colonization by endophytic fungi.
DOI: 10.6084/m9.figshare.28239185.v1
title: Supplementary Material for: Acinetobacter baumannii clinical isolates resist complement-mediated lysis by inhibiting the complement cascade and improperly depositing MAC.

description: Acinetobacter baumannii is a gram-negative opportunistic bacterium that causes life-threatening infections in immunocompromised hosts. The World Health Organization (WHO) recognizes the high mortality and increasing antimicrobial resistance of A. baumannii and calls for new treatment options. The complement system is a critical mechanism of innate immunity that protects the human body from bacterial infections. Complement activation leads to the deposition of the membrane attack complex (MAC), which can directly lyse gram-negative bacteria. However, A. baumannii has developed evasion mechanisms to protect itself from complement. Here, we examined clinical isolates of A. baumannii and found 11 isolates with MAC deposition and 5 isolates without deposition. Trypsinization of MAC-positive isolates significantly reduced MAC, indicating incorrect insertion, consistent with a lack of lysis of these strains. MAC-negative isolates inhibited alternative pathway activation and were significantly more serum-resistant. These strains were also more virulent in a Galleria mellonella infection model. Whole genome sequencing revealed that MAC-negative isolates carried more virulence genes, and both MAC-negative and MAC-positive A. baumannii significantly differed in capsule type. Importantly, a correlation was observed between complement inhibition and capsule type (e.g., capsule locus KL171) of MAC-negative bacteria, while the capsule type (e.g., KL230) of MAC-positive A. baumannii was associated with increased sensitivity to MAC-mediated lysis. Thus, our findings suggest a relationship between capsule type, complement resistance, and host virulence in A. baumannii.
DOI: 10.6084/m9.figshare.19753924.v1
title: Supplementary Material for: Cerebrovascular Disease Profiles of Culturally and Linguistically Diverse Communities in South Western Sydney and New South Wales

description: <b><i>Introduction:</i></b> Culturally and linguistically diverse (CALD) communities are growing globally. Understanding patterns of cerebrovascular disease in CALD communities may improve health outcomes through culturally specific interventions. We compared rates of transient ischaemic attack (TIA)/stroke (ischaemic stroke, intracerebral haemorrhage) and stroke risk factor prevalence in overseas and Australian-born people in South Western Sydney (SWS) and New South Wales (NSW). <b><i>Methods:</i></b> This was a 10-year retrospective analysis (2011–2020) of SWS and NSW age-standardized rates per 100,000 person-years of TIA/stroke. Data were extracted from Health Information Exchange and Secure Analytics for Population Health Research and Intelligence systems. Rates of hypertension, type 2 diabetes mellitus (T2DM), atrial fibrillation (AF), smoking, and obesity were also calculated. <b><i>Results:</i></b> The SWS and NSW age-standardized rate of TIA/stroke for people born in Australia was 100 per 100,000 person-years (100/100,000/year). In SWS, 56.6% of people were overseas-born compared to 29.8% for NSW. The age-standardized rate of TIA/stroke for Polynesian-born people was more than double that of Australian-born people (<i>p</i> &lt; 0.001). Hypertension (33 [SWS] vs. 27/100,000/year [NSW]) and T2DM (36 [SWS] vs. 26/100,000/year [NSW]) were the most common risk factors with rates &gt;50/100,000/year (hypertension) and &gt;80/100,000/year (T2DM) for people born in Polynesia, Melanesia, and Central America. Rates of T2DM, AF, and obesity for Polynesian-born people were over threefold greater than people born in Australia. <b><i>Discussion/Conclusion:</i></b> Greater rates of TIA/stroke were observed in specific CALD communities, with increased rates of cerebrovascular risk factors. Culturally specific, targeted interventions may bridge health inequalities in cerebrovascular disease.
DOI: 10.6084/m9.figshare.23723637.v1
title: Supplementary Material for: Prognostic ability of nutritional indices for outcomes of bladder cancer: A systematic review and meta-analysis

description: Background: Nutrition has become an important parameter influencing the prognosis of several cancers. However, its impact on outcomes of bladder cancer (BC) is still unclear. This review examines the association between three commonly used nutritional indices namely, the prognostic nutritional index (PNI), controlling nutritional status (CONUT), and the geriatric nutritional risk index (GNRI) and outcomes of BC. Methods: PubMed, CENTRAL, Scopus, Web of Science, Embase, and Google Scholar were explored for studies published up to 13th April 2023. Data from studies were pooled to examine the association between PNI, CONUT, or GNRI and overall survival (OS) and recurrence-free survival (RFS). Results: Thirteen studies were included. Meta-analysis demonstrated significantly poor OS with low PNI vs high PNI in BC patients (HR: 1.71 95% CI: 1.37, 2.14 I2=0%). This result remained significant in various subgroup analyses. However, no association was noted between PNI and RFS (HR: 1.22 95% CI: 0.67, 2.24 I2=84%). Meta-analysis showed that patients with high CONUT scores had significantly poor OS (HR: 2.43 95% CI: 1.82, 3.25 I2=0%) as well as RFS (HR: 2.90 95% CI: 2.10, 4.01 I2=0%). Data on GNRI was scarce and conflicting. Conclusion: Limited data shows that PNI and CONUT are predictive of outcomes in BC. Low PNI was associated with poor OS while high CONUT was associated with poor OS and RFS. Data on GNRI is too scarce to obtain conclusions. Further studies are needed to supplement the results.
DOI: 10.6084/m9.figshare.95960.v1
title: Entropy Source - 10M

description: This is a large, low-quality entropy source, suitable for monte carlo and other simulations.
DOI: 10.6084/m9.figshare.20070362.v1
title: Supplementary Material for: Characterization of the Immune Microenvironment in Inflammatory Breast Cancer Using Multiplex Immunofluorescence

description: <b><i>Introduction:</i></b> Inflammatory breast cancer (IBC) is an aggressive form of breast cancer with a poorly characterized immune microenvironment. <b><i>Methods:</i></b> We used a five-colour multiplex immunofluorescence panel, including CD68, CD4, CD8, CD20, and FOXP3 for immune microenvironment profiling in 93 treatment-naïve IBC samples. <b><i>Results:</i></b> Lower grade tumours were characterized by decreased CD4+ cells but increased accumulation of FOXP3+ cells. Increased CD20+ cells correlated with better response to neoadjuvant chemotherapy and increased CD4+ cells infiltration correlated with better overall survival. Pairwise analysis revealed that both ER+ and triple-negative breast cancer were characterized by co-infiltration of CD20 + cells with CD68+ and CD4+ cells, whereas co-infiltration of CD8+ and CD68+ cells was only observed in HER2+ IBC. Co-infiltration of CD20+, CD8+, CD4+, and FOXP3+ cells, and co-existence of CD68+ with FOXP3+ cells correlated with better therapeutic responses, while resistant tumours were characterized by co-accumulation of CD4+, CD8+, FOXP3+, and CD68+ cells and co-expression of CD68+ and CD20+ cells. In a Cox regression model, response to therapy was the most significant factor associated with improved patient survival. <b><i>Conclusion:</i></b> Those results reveal a complex unique pattern of distribution of immune cell subtypes in IBC and provide an important basis for detailed characterization of molecular pathways that govern the formation of IBC immune landscape and potential for immunotherapy.
DOI: 10.6084/m9.figshare.17132108.v1
title: Lab Report Supplementary Data File 1

description: Supplementary Raw Data File used to generate Figures 1A, 1C, 1F, 2A, and 2E in the Lab Report Assignment for Medical Sciences 4990.
DOI: 10.6084/m9.figshare.25772784.v1
title: Tree Rings in common garden Experiments (T-REX): Standing Genetic Variation Matters!

description: Climate change (CC) necessitates reforestation/afforestation programs to mitigate its impacts and maximise carbon sequestration. But comprehending how tree growth, a proxy for fitness and resilience, responds to climate change is critical to maximize these programs’ effectiveness. Variability in tree response to CC across populations can notably be influenced by the standing genetic variation encompassing both neutral and adaptive genetic diversity. Here, a framework is proposed to assess tree growth potential at the population scale while accounting for standing genetic variation<i>.</i> We applied this framework to black spruce (BS, <i>Picea mariana </i>[Mill] B.S.P.), with the objectives to 1) determine the key climate variables having impacted BS growth response from 1974 to 2019, 2) examine the relative roles of local adaptation and the phylogeographic structure in this response, and 3) project BS growth under two Shared Socioeconomic Pathways while taking standing genetic variation into account. We modeled growth using a machine learning algorithm trained with dendroecological and genetic data obtained from 2,600 trees (62 populations divided in three genetic clusters) in four 48-year-old common gardens, and simulated growth until year 2100 at the common garden locations. Our study revealed that high summer and autumn temperatures negatively impacted BS growth. As a consequence of warming, this species is projected to experience a decline in growth by the end of the century, suggesting maladaptation to anticipated CC and a potential threat to its carbon sequestration capacity. This being said, we observed a clear difference in response to CC within and among genetic clusters, with the western cluster being more impacted than the central and eastern clusters. Our results show that intraspecific genetic variation, notably associated with the phylogeographic structure, must be considered when estimating the response of widespread species to CC.<b>Robert, E., Lenz, P., Bergeron, Y., de Lafontaine, G., Bouriaud, O., Isabel, N., Girardin, M.P.</b>.2024. Future carbon sequestration potential in a widespread transcontinental boreal tree species: standing genetic variation matters! <i>Global Change Biology</i>
DOI: 10.6084/m9.figshare.7916381.v1
title: Supplementary Material for: Tollip Inhibits ST2 Signaling in Airway Epithelial Cells Exposed to Type 2 Cytokines and Rhinovirus

description: The negative immune regulator Tollip inhibits the proinflammatory response to rhinovirus (RV) infection, a contributor to airway neutrophilic inflammation and asthma exacerbations, but the underlying molecular mechanisms are poorly understood. Tollip may inhibit IRAK1, a signaling molecule downstream of ST2, the receptor of IL-33. This study was carried out to determine whether Tollip downregulates ST2 signaling via inhibition of IRAK1, but promotes soluble ST2 (sST2) production, thereby limiting excessive IL-8 production in human airway epithelial cells during RV infection in a type 2 cytokine milieu (e.g., IL-13 and IL-33 stimulation). Tollip- and IRAK1-deficient primary human tracheobronchial epithelial (HTBE) cells and Tollip knockout (KO) HTBE cells were generated using the shRNA knockdown and CRISPR/Cas9 approaches, respectively. Cells were stimulated with IL-13, IL-33, and/or RV16. sST2, activated IRAK1, and IL-8 were measured. A Tollip KO mouse model was utilized to test if Tollip regulates the airway inflammatory response to RV infection in vivo under IL-13 and IL-33 treatment. Following IL-13, IL-33, and RV treatment, Tollip-deficient (vs. -sufficient) HTBE cells produced excessive IL-8, accompanied by decreased sST2 production but increased IRAK1 activation. IL-8 production following IL-13/IL-33/RV exposure was markedly attenuated in IRAK1-deficient HTBE cells, as well as in Tollip KO HTBE cells treated with an IRAK1 inhibitor or a recombinant sST2 protein. Tollip KO (vs. wild-type) mice developed exaggerated airway neutrophilic responses to RV in the context of IL-13 and IL-33 treatment. Collectively, these data demonstrate that Tollip restricts excessive IL-8 production in type 2 cytokine-exposed human airways during RV infection by promoting sST2 production and inhibiting IRAK1 activation. sST2 and IRAK1 may be therapeutic targets for attenuating excessive neutrophilic airway inflammation in asthma, especially during RV infection.
DOI: 10.6084/m9.figshare.1544685.v5
title: Gender vs. Hair Colour Survey

description: This lab was performed on Tuesday.September.15th.2015 at York University. Group members included: Houra, Alexandra and Kathy.In this experiment different hair colours of 20 university students was collected, M denoting male anf F denoting female. The two variables that were compared were students hair colour and gender.. The qualitative data was collected through observation, resulting in three diffent hair types; brown, black and blonde.The distribution of hair color in this experiemnent was categorical. It was seen that black was the most common hair colour throughout the class.
DOI: 10.6084/m9.figshare.22138355.v1
title: Activity CT table

description: Dataset including camera IDs, dates of deployment, dates of retrieval, and any problem periods.
DOI: 10.6084/m9.figshare.28208339.v1
title: SoilConc_Raw.xlsx

description: Supporting data containing ash depth, soil moisture, pH, and trace element concentrations from soil cores taken at a contaminated and reference site in Savannah River Site in 2022 as part of an accumulation study. Also includes soil trace element concentrations taken in 2003 from a previous study in the same contaminated location.
DOI: 10.17632/m4wxpzhdz5.1
title: Application of the quantum Fourier transform in a harmonic balance solver for Burgers' equation

description: This dataset contains part of the numerical codes and data used for Dewitte, L., Roland, J., Eulitz, F. 'Application of the quantum Fourier transform in a harmonic balance solver for Burgers’ equation'. Computers & Fluids, vol. 295, June 2025, 106619. https://doi.org/10.1016/j.compfluid.2025.106619.

More specifically, this dataset contains the codes used to generate the data for the paper (i.e., the numerical solver and the VKI QCFD Framework which implements the QFT algorithms), as well as the statistics derived from the numerical study of the QFT algorithms. It does not contain the codes used for data post-processing, nor the raw data from the algorithm study or the solver study. The raw data are available from the corresponding author, Frank Eulitz (frank.eulitz@vki.ac.be), upon reasonable request.
DOI: 10.6084/m9.figshare.17098907.v1
title: Training Data

description: Data used for training the TMT model.
DOI: 10.60893/figshare.jcp.25891249.v1
title: Supplementary Material

description: details of diamond(111) substrate model ; adsorption pathway and barrier of N2 on C(111)-1x1-H ; adsorption and desorption of N2 at the boundary of graphite-like C(111) domain.
DOI: 10.6084/m9.figshare.26877769.v1
title: pheno.xlsx

description: 共有 413 头约克郡马车，在同一农场饲养 上 ，年龄相似，在徐州正大食品有限公司分五批屠宰。在屠宰时记录每头猪的胴体重量，并收集所有耳组织样本用于随后的 DNA 提取。该种群的平均胴体重量为 99.8 （± 0.6） 公斤。宰后，将全肠从腹腔取出，去除肠系膜，在回盲部交界处将肠道分为小肠和大肠。小肠和大肠平放在水平面上。使用软卷尺测量和记录每头猪的小肠长度（从十二指肠前端到回肠末端，SIL）和盲肠结肠（从盲肠前端到结肠后端，C-CIL）。SIL 有 14 个缺失值 嘲讽 ，C-CIL。
DOI: 10.6084/m9.figshare.1287781.v1
title: Paleoneuroanatomy of the European lambeosaurine dinosaur Arenysaurus ardevoli.

description: CT scans from the braincase of the lambeosaurine dinosaur Arenysaurus ardevoli. CT-scans in two parts. See the original article for more information: Cruzado-Caballero, P., Fortuny, J., Llacer, S., Canudo, J.I., Paleoneuroanatomy of the European lambeosaurine dinosaur Arenysaurus ardevoli. Peerj.. .
DOI: 10.6084/m9.figshare.16692193.v1
title: Informing conservation decisions to target private lands of highest ecological value and risk of loss

description: hese data are associated with: Hansen, A.J., K. Mullan, D.M. Theobald. N. Robinson, A. East. In Press. Informing conservation decisions to target private lands of highest ecological value and risk of loss. Ecological Applications. Data include relative ecological value of net primary productivity, vertebrate species richness, ecosystem representation, protection-weighted range-size rarity of imperiled species, and connectivity, Data also include relative ecological value and biological conservation priority index. These are expressed relative to the study area and to socioecological regions. The final data set is risk o floss of natural vegetation cover.
DOI: 10.6084/m9.figshare.7913870.v1
title: gVCF_NA19055

description: 1000 Genomes gVCF mapped to hs37d5 for NA19055. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7599674.v1
title: Supplementary Material for: CD14 Counterregulates Lipopolysacharide-Induced Tumor Necrosis Factor-α Production in a Macrophage Subset

description: In response to GM-CSF or M-CSF, macrophages (MΦ) can acquire pro- or anti-inflammatory properties, respectively. Given the importance of CD14 and Toll-like receptor (TLR) 4 in lipopolysaccharide (LPS)-induced signaling, we studied the effect of anti-CD14 antibody mediated CD14 blockade on LPS-induced cytokine production, signal transduction and on the expression levels of CD14 and TLR4 in GM-MΦ and M-MΦ. We found M-MΦ to express higher levels of both surface antigens and to produce more interferon (IFN)-β and interleukin-10, but less tumor necrosis factor (TNF)-α than GM-MΦ. Blockage of CD14 at high LPS concentrations increased the production of proinflammatory cytokines and decreased that of IFN-β in M-MΦ but not in GM-MΦ. We show that phosphorylation states of signaling molecules of the MyD88 (myeloid differentiation primary response 88), TRIF (TIR-domain-containing adapter-inducing IFN-β) and MAPK (mitogen-activated protein kinase) pathways are not altered in any way that would account for the cytokine overshoot reaction. However, CD14 blockage in M-MΦ decreased TLR4 and CD14 expression levels, regardless of the presence of LPS, indicating that the loss of the surface molecules prevented LPS from initiating TRIF signaling. As TNF-α synthesis was even upregulated under these experimental conditions, we suggest that TRIF is normally involved in restricting LPS-induced TNF-α overproduction. Thus, surface CD14 plays a decisive role in the biological response by determining LPS-induced signaling.
DOI: 10.6084/m9.figshare.9771926.v4
title: The Relationships Between Blink Rates Before, During Perimetry and Perimetry Reliability

description: Perimetry was performed using the Humphrey Visual Field Analyzer II (model 750) with the Swedish interactive threshold algorithm (SITA) standard strategy, the 30-2 program, and a size III white stimulus on a white background (equivalent to 31.5 apostilbs). The fixation loss, false positive, and false negative rates were used to assess the reliability of perimetry.<br> (A) Data for patients with dry eye. (B) Data for normal control subjects. Group 1; eyes with decreased blink rates during perimetry in patients with dry eye; Group 2; eyes with increased or unchanged blink rates during perimetry in patients with dry eye; Group 3; eyes with decreased blink rates during perimetry in normal control subjects; Group 4; eyes with increased or unchanged blink rates during perimetry in normal control subjects.<br> Pre-perimetry blink rates in the eyes with blink rates that decreased during perimetry varied from 3 to 44/min in patients with DE (Group 1) and from 4 to 48/min in normal control subjects (Group 3). Blink rates before perimetry in the eyes with blink rates that increased or remained unchanged during perimetry were &lt; 17/min in patients with DE (Group 2) and 19/min in normal control subjects (Group 4), respectively (Fig 1). Blink rates during perimetry were significantly lower in Group 1 compared to Group 2, and in Group 3 compared to Group 4: Group 1, 4.6 (1.7-7.0 [0-21]) vs. Group 2, 13.4 (11.4-16.0 [2-39]) /min and Group 3, 2.6 (0.9-5.4 [0-12]) vs. Group 4, 20.1 (11.0-30.5 [4-36]) /min (P=0.007 and P&lt;0.001, respectively).<br> Fixation loss rate was significantly higher in eyes with decreased blink rates among patients with dry eye (P=0.002).