cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5tx08
title: MassIVE MSV000084800 - Ubiquitin Proteomics Analysis of Systemic Sclerosis Lung Fibroblasts with or without KLHL42 knockdown
title: Systemic scleroderma (SSc) is an autoimmune disease which results in fibrotic production in the lung. Resultant SSC-pulmonary fibrosis is the main cause of mortality among SSc patients. From high throughput RNAi screening, we uncovered the ubiquitin E3 ligase KLHL42 as a potential pro-fibrotic mediator of TGFb-dependent fibrotic signaling in primary SSc lung fibroblasts. In this analysis, we sought to uncover putative substrates for KLHL42 by comparing SSc lung fibroblasts with control or KLHL42 siRNA prior to TGFb-treatment, lysis, and TUBE precipitation. The resultant pull-down was analyzed with LC-MS/MS.
DOI: 10.5281/zenodo.3608021
title: Data set: Grain Reynolds number scale effects in dry granular slides

description: Scale series of velocity, flow depth and run out data for dry granular materials flowing down a slope with side walls.
DOI: 10.5281/zenodo.3608022
title: Data set: Grain Reynolds number scale effects in dry granular slides

description: Scale series of velocity, flow depth and run out data for dry granular materials flowing down a slope with side walls.
DOI: 10.5286/isis.e.rb2010803
title: Proton migration in chromic materials as seen by in-situ simultaneous Neutron Diffraction and Raman Spectroscopy

description: As part of a facility project aimed at developing a new sample environment allowing simultaneous in-situ neutron diffraction and Raman spectroscopy, we propose to study the proton migration in N-(5-chlorosalicylidene)-4-hydroxyaniline and in N-(3,5-di-tert-butylsalicylidene)-3-nitroaniline. Both compounds are chromotropic and such behavior is associated with the transfer of a hydrogen atom from the oxygen atom of a phenolic group to a nitrogen atom to produce an enamine. The proton migration occurs either by thermal (thermochromic) or light stimuli (photochromic) and the possibility of studying the structural features and the Raman response at the same time will probe the mechanisms of action in fine details whilst building fundamental knowledge to be used for further calculations on these systems.
DOI: 10.5286/isis.e.rb2010803-1
title: Proton migration in chromic materials as seen by in-situ simultaneous Neutron Diffraction and Raman Spectroscopy

description: As part of a facility project aimed at developing a new sample environment allowing simultaneous in-situ neutron diffraction and Raman spectroscopy, we propose to study the proton migration in N-(5-chlorosalicylidene)-4-hydroxyaniline and in N-(3,5-di-tert-butylsalicylidene)-3-nitroaniline. Both compounds are chromotropic and such behavior is associated with the transfer of a hydrogen atom from the oxygen atom of a phenolic group to a nitrogen atom to produce an enamine. The proton migration occurs either by thermal (thermochromic) or light stimuli (photochromic) and the possibility of studying the structural features and the Raman response at the same time will probe the mechanisms of action in fine details whilst building fundamental knowledge to be used for further calculations on these systems.
DOI: 10.5286/isis.e.rb2010310
title: Internal protein dynamics upon ligand binding.

description: Molecular dynamics are of vital importance for the biological function of proteins. The proposed system of biotin and streptavidin has a stoichiometry of 4 biotin per protein. The thermal stability of streptavidin has been shown to be affected by the ratio of biotin to streptavidin.[1] Previous experiments have shown that internal dynamics change upon saturation of streptavidin with biotin. Therefore, measurements at different biotin streptavidin ratios are of interest. A Fourier transformation of the data allows for the extension of the dynamic range and thus overlaps with the timescale analysed in the proposed IRIS experiment. The proposed hypothesis is that even the binding of one biotin to streptavidin modifies the whole internal dynamics1. M.Gonzales et al. 1999, Biomolecular Engineering, 16 67-72
DOI: 10.5286/isis.e.rb2010310-1
title: Internal protein dynamics upon ligand binding.

description: Molecular dynamics are of vital importance for the biological function of proteins. The proposed system of biotin and streptavidin has a stoichiometry of 4 biotin per protein. The thermal stability of streptavidin has been shown to be affected by the ratio of biotin to streptavidin.[1] Previous experiments have shown that internal dynamics change upon saturation of streptavidin with biotin. Therefore, measurements at different biotin streptavidin ratios are of interest. A Fourier transformation of the data allows for the extension of the dynamic range and thus overlaps with the timescale analysed in the proposed IRIS experiment. The proposed hypothesis is that even the binding of one biotin to streptavidin modifies the whole internal dynamics1. M.Gonzales et al. 1999, Biomolecular Engineering, 16 67-72
DOI: 10.25412/iop.11395185
title: Deforestation_Drivers_Tanzania_Supplementary_Material_File_2_Data_181219.xlsx

description: Results of a national study of deforestation drivers in Tanzania. The data shows the results of ground survey plots from 119 randomly selected deforestation events across Tanzania. Deforestation events cover the period 2010 to 2015/16/17. Results of informant interviews are also included. The data describe the prevalence of agriculture, charcoal, fire, wood fuel collection, timber harvesting and livestock grazing in deforestation events across the country. Details on crops and fallow status are also included. Data was collected in 2018.
DOI: 10.25412/iop.11395185.v1
title: Deforestation_Drivers_Tanzania_Supplementary_Material_File_2_Data_181219.xlsx

description: Results of a national study of deforestation drivers in Tanzania. The data shows the results of ground survey plots from 119 randomly selected deforestation events across Tanzania. Deforestation events cover the period 2010 to 2015/16/17. Results of informant interviews are also included. The data describe the prevalence of agriculture, charcoal, fire, wood fuel collection, timber harvesting and livestock grazing in deforestation events across the country. Details on crops and fallow status are also included. Data was collected in 2018.
DOI: 10.5281/zenodo.3604004
title: Example data for Drone VIdeo Measure program

description: This directory contains two videos and matching flight log files acquired by a DJI Phantom 4 Pro converted to csv.<br> The videos and flight logs are matched as follows:<br> `DJI_0004.MOV` are covered by `DJIFlightRecord_2018-07-04_[10-42-34].csv`,<br> `DJI_0013.MOV` are covered by `DJIFlightRecord_2018-07-04_[11-19-31].csv` In `DJI_0004.MOV` the drone circled around a point, with the camera pointing towards the center of rotation.<br> In `DJI_0013.MOV` the drone stayed in the same location and the camera pitch was changed from looking forward to downwards. In addition is video of a checkerboard recorded by the drone used to calibrate the camera. (calibration.MOV) A screen-recording showing how to use the data is also included. (demo.mp4) The above files are intended to be used as example input data for the program https://github.com/egemose/DroneVideoMeasure
DOI: 10.5281/zenodo.3604005
title: Example data for Drone VIdeo Measure program

description: This directory contains two videos and matching flight log files acquired by a DJI Phantom 4 Pro converted to csv.<br> The videos and flight logs are matched as follows:<br> `DJI_0004.MOV` are covered by `DJIFlightRecord_2018-07-04_[10-42-34].csv`,<br> `DJI_0013.MOV` are covered by `DJIFlightRecord_2018-07-04_[11-19-31].csv` In `DJI_0004.MOV` the drone circled around a point, with the camera pointing towards the center of rotation.<br> In `DJI_0013.MOV` the drone stayed in the same location and the camera pitch was changed from looking forward to downwards. In addition is video of a checkerboard recorded by the drone used to calibrate the camera. (calibration.MOV) A screen-recording showing how to use the data is also included. (demo.mp4) The above files are intended to be used as example input data for the program https://github.com/egemose/DroneVideoMeasure
DOI: 10.5281/zenodo.3607941
title: surface refractivity and its dry and wet components measured data at Kuujjuaq and Montreal stations

description: surface refractivity and its dry and wet components measured data at Kuujjuaq and Montreal stations
DOI: 10.5281/zenodo.3607942
title: surface refractivity and its dry and wet components measured data at Kuujjuaq and Montreal stations

description: surface refractivity and its dry and wet components measured data at Kuujjuaq and Montreal stations
DOI: 10.21227/fyey-zc98
title: Automatic lung segmentation results Nextmed project

description: Nextmed project is a software platform for the segmentation and visualization of medical images. It consist on a series of different automatic segmentation algorithms for different anatomical structures and a platform for the visualization of the results as 3D models.This dataset contains the .obj and .nrrd files that correspond to the results of applying our automatic lung segmentation algorithm to the LIDC-IDRI dataset.This dataset relates to 718 of the 1012 LIDC-IDRI scans.
DOI: 10.21227/t96g-2057
title: Automatic lung segmentation results Nextmed project

description: Nextmed project is a software platform for the segmentation and visualization of medical images. It consist on a series of different automatic segmentation algorithms for different anatomical structures and a platform for the visualization of the results as 3D models.This dataset contains the .obj and .nrrd files that correspond to the results of applying our automatic lung segmentation algorithm to the LIDC-IDRI dataset.This dataset relates to 718 of the 1012 LIDC-IDRI scans.
DOI: 10.5281/zenodo.3606760
title: ASA³P example & benchmark datasets

description: These are the benchmark and example datasets used in Schwengers et al. 2020, PLOS CompBio - 10.1371/journal.pcbi.1007134. https://github.com/oschwengers/asap
DOI: 10.5281/zenodo.3606761
title: ASA³P example & benchmark datasets

description: These are the benchmark and example datasets used in Schwengers et al. 2020, PLOS CompBio - 10.1371/journal.pcbi.1007134. https://github.com/oschwengers/asap
DOI: 10.21227/03dn-vw03
title: Automatic lung segmentation results Nextmed project

description: Nextmed project is a software platform for the segmentation and visualization of medical images. It consist on a series of different automatic segmentation algorithms for different anatomical structures and a platform for the visualization of the results as 3D models.This dataset contains the .obj and .nrrd files that correspond to the results of applying our automatic lung segmentation algorithm to the LIDC-IDRI dataset.This dataset relates to 718 of the 1012 LIDC-IDRI scans.
DOI: 10.5281/zenodo.3607557
title: Inference based decisions in a hidden state foraging task: differential contributions of prefrontal cortical areas

description: Tabular dataset of behavioral data in the hidden state foraging task. The data is stored as a unique table, with one row per "attempt", i.e. a poke for mice and a tap for humans. The table includes four distinct experiments, encoded in the Experiment column. Experiment "Learning" refers to Fig. 2, experiment "VaryingParameters" refers to Fig. 2h and Fig.3. Experiment "LearningAndVaryingParameters" refers to Fig. 4. Experiment "OptogeneticInactivation" refers to Fig. 5. The column "TestingSession" defines whether those sessions were used for the analysis. It is used to exclude adaptation sessions to a new protocol for rodents in the "VaryingParameters" and "OptogeneticInactivation" experiments. In the human case, after an incorrect transition the subject receives an error cue and does not tap. This is considered a "trial" (and also a "streak") but not an attempt. This causes the StreakNumber and PokeNumber columns to increase by 2 after an error cue.
DOI: 10.5281/zenodo.3607558
title: Inference based decisions in a hidden state foraging task: differential contributions of prefrontal cortical areas

description: Tabular dataset of behavioral data in the hidden state foraging task. The data is stored as a unique table, with one row per "attempt", i.e. a poke for mice and a tap for humans. The table includes four distinct experiments, encoded in the Experiment column. Experiment "Learning" refers to Fig. 2, experiment "VaryingParameters" refers to Fig. 2h and Fig.3. Experiment "LearningAndVaryingParameters" refers to Fig. 4. Experiment "OptogeneticInactivation" refers to Fig. 5. The column "TestingSession" defines whether those sessions were used for the analysis. It is used to exclude adaptation sessions to a new protocol for rodents in the "VaryingParameters" and "OptogeneticInactivation" experiments. In the human case, after an incorrect transition the subject receives an error cue and does not tap. This is considered a "trial" (and also a "streak") but not an attempt. This causes the StreakNumber and PokeNumber columns to increase by 2 after an error cue.
DOI: 10.17632/phhwzvxzhs.1
title: Data for: Mixing zones within the complex transitional waters of the Baltic Sea Vistula Lagoon

description: Different files for the marine and riverine parts of the survey. The dataset includes Temperature, Salinity, Density, Dissolved oxygen (% and concentration), DSi, DIP, SPM
DOI: 10.25345/c5kd66
title: MassIVE MSV000084802 - The cell surface proteome of mouse retina
title: The proteins residing on the cell surface of the mouse retina.
DOI: 10.25345/c5q383
title: MassIVE MSV000084801 - ENaC beta is cleaved by cathepsin-B in the STZ-induced diabetic rat kidney
title: Amiloride-sensitive epithelial sodium channels (ENaC) expressed at the apical plasma membrane of polarized epithelial cells within the aldosterone-sensitive distal nephron play an important role in the control of sodium balance, blood volume, and blood pressure. Activation of ENaC requires proteolysis and various proteases including cathepsin B have been shown to cleave and activate the channel. Only the proteolysis of ENaC alpha and gamma subunits within the native kidney has been characterized. Here we characterize the proteolysis of ENaC beta in the diabetic kidney by cathepsin B. In this study, we show the protein expression and activity of various members of the cathepsin family including cathepsin B, as well as the protein expression and proteolysis of ENaC beta is increased after STZ induced diabetes mellitus. We used a proteomic approach to validate predicted cathepsin B cleavage sites and to identify novel sites for ENaC beta. The results from this study will contribute to our understanding of the overall regulation of ENaC in the diabetic kidney.
DOI: 10.17632/mdxzzfbscw.1
title: Data for: Effects of Particle Contact Characteristics on Heat Transfer Performance of Calcined Petroleum Coke Heat Exchanger

description: The numerical simulation
DOI: 10.17632/cnb3c3bzdv.1
title: Data for: Multiple Equilibrium Behaviors of Auto Travellers And A Freight Carrier Under the Cordon-Based Large-Truck Restriction Regulation

description: Path ﬂow based formulation for the GNE model
DOI: 10.17632/ntn2nzsnd8.1
title: Data for: The second member of bacterial UDP-N-acetyl-D-glucosamine:heparosan alpha-1, 4-N-acetyl-D-glucosaminyltransferase superfamily: GaKfiA from Gallibacterium anatis
DOI: 10.5286/isis.e.rb2010327
title: Magnetic soliton dynamics

description: The materials Cr1/3MS2 (M=Nb, Ta) have recently attracted attention as potential hosts of a chiral magnetic soliton lattice (CSL), with confirmed observations of this state in the M=Nb material. Magnetic solitons show a potential for applications in future data-transfer applications. Our previous LF-muSR work on topological magnetic textures such as skyrmions has shown that the technique provides unique insights into the nature of these states. Here we propose to perform the first LF-muSR measurements of a CSL state. This proposal is part of a major UK project to investigate skyrmion physics, along with related topological physics, and to engineer topological materials towards application.
DOI: 10.5286/isis.e.rb2010327-1
title: Magnetic soliton dynamics

description: The materials Cr1/3MS2 (M=Nb, Ta) have recently attracted attention as potential hosts of a chiral magnetic soliton lattice (CSL), with confirmed observations of this state in the M=Nb material. Magnetic solitons show a potential for applications in future data-transfer applications. Our previous LF-muSR work on topological magnetic textures such as skyrmions has shown that the technique provides unique insights into the nature of these states. Here we propose to perform the first LF-muSR measurements of a CSL state. This proposal is part of a major UK project to investigate skyrmion physics, along with related topological physics, and to engineer topological materials towards application.
DOI: 10.7910/dvn/doew2m/1vcgxs
title: WrightIASR_replication.tab

description: :unav
DOI: 10.7910/dvn/doew2m/qkifvw
title: WrightIASR_Replication.do

description: :unav
DOI: 10.7910/dvn/doew2m/rvilu2
title: WrightIASR_OnlineAppendix.pdf

description: :unav
DOI: 10.5286/isis.e.rb2010599
title: Magnetic field effect on low-energy spin excitations in a novel quantum spin liquid candidate

description: We plan to study the effect of magnetic field on the spin excitations in the newly discovered quantum spin liquid Na2BaCo(PO4)2. Our preliminary inelastic neutron scattering measurements on the powder sample reveals that the spin-excitation is continuum-type at base T (1K) without external field, with band-width in the order of 0.1 to 0.2 meV. With a large enough field above the critical value (Hc ~ 2T), the energy of the spin excitations is lifted. Most importantly, one could observe a possible dispersion suggesting well-defined excitations are induced by the field when the system is driven out of the quantum spin liquid state. We would like to study the effect of field on this material in more details with single crystal samples available in order to understand how the spin excitations change between a quantum spin liquid state and a disordered non-spin-liquid state.
DOI: 10.5286/isis.e.rb2010599-1
title: Magnetic field effect on low-energy spin excitations in a novel quantum spin liquid candidate

description: We plan to study the effect of magnetic field on the spin excitations in the newly discovered quantum spin liquid Na2BaCo(PO4)2. Our preliminary inelastic neutron scattering measurements on the powder sample reveals that the spin-excitation is continuum-type at base T (1K) without external field, with band-width in the order of 0.1 to 0.2 meV. With a large enough field above the critical value (Hc ~ 2T), the energy of the spin excitations is lifted. Most importantly, one could observe a possible dispersion suggesting well-defined excitations are induced by the field when the system is driven out of the quantum spin liquid state. We would like to study the effect of field on this material in more details with single crystal samples available in order to understand how the spin excitations change between a quantum spin liquid state and a disordered non-spin-liquid state.
DOI: 10.7910/dvn/epqmkw/8ti56d
title: WrightIASR_replication.tab

description: :unav
DOI: 10.7910/dvn/epqmkw/vokctb
title: WrightIASR_OnlineAppendix.pdf

description: :unav
DOI: 10.7910/dvn/epqmkw/z841fo
title: WrightIASR_Replication.do

description: :unav
DOI: 10.7910/dvn/eli51f/69sk9r
title: b&b90temp.tab

description: temporary data set resulting from "generate ideodistgov6099 and malideodistgov6099.do" necessary to generate "b&b90complete.tab"
DOI: 10.7910/dvn/eli51f/emo4ub
title: README.txt

description: :unav
DOI: 10.7910/dvn/eli51f/iyv9ec
title: ideology_relative_berry.R

description: code to generate some ideological diffusion variables
DOI: 10.7910/dvn/eli51f/jr2cox
title: b&b90complete.tab

description: final data set (including) ideological diffusion variables
DOI: 10.7910/dvn/eli51f/nztd8t
title: b&b90.tab

description: initial data set
DOI: 10.7910/dvn/eli51f/tawl8k
title: b&b.doc

description: Regression table
DOI: 10.7910/dvn/eli51f/xxxrh7
title: analysis.do

description: Code to reproduce results
DOI: 10.7910/dvn/eli51f/yav8gy
title: codebook.txt

description: :unav
DOI: 10.7910/dvn/eli51f/z9vgku
title: generate ideodistgov6099 and malideodistgov6099.do

description: code to generate some ideological diffusion variables
DOI: 10.25345/c5fm3w
title: MassIVE MSV000084803 - Metabolomic analysis of HIV-Related Neuropathogenesis and Alzheimers Disease
title: Data was collected on a LC-MS/MS system positive mode. Plasma and cerebrospinal fluid data from humans were acquired on the Q-Exactive with a c-18 column.
DOI: 10.7910/dvn/djrom5/hq0mq8
title: ihis_00008.dat

description: :unav
DOI: 10.7910/dvn/djrom5/iaibs0
title: nhis_DACA_Jan82020_forpublic.do

description: Analytic do-file
DOI: 10.17638/datacat.liverpool.ac.uk/1011
title: Solid State Nuclear Magnetic Resonance Studies of HydroxyPropylMethylCellulose Acetyl Succinate polymer, a Useful Carrier in Pharmaceutical Solid Dispersions
DOI: 10.7910/dvn/qycgu4/7rzf7s
title: 2014 NFIP Community Rating System Report to Congress FINAL_01_22_2015.pdf

description: :unav
DOI: 10.7910/dvn/qycgu4/afvxhi
title: 2008_CRS_Report_to_Congress_FINAL_pdf_7-13-09.pdf

description: :unav
DOI: 10.7910/dvn/qycgu4/lsnzno
title: 2006 NFIP-CRS Report to Congress.pdf

description: :unav
DOI: 10.7910/dvn/qycgu4/v001c5
title: 2012_CRS_Report_to_Congress.pdf

description: :unav
DOI: 10.7910/dvn/qycgu4/xnzajm
title: 2016 NFIP Community Rating System FINAL.pdf

description: :unav
DOI: 10.7910/dvn/qycgu4/m9qe1n
title: 2010 CRS Report to Congress-Final.pdf

description: :unav
DOI: 10.5281/zenodo.3608234
title: UV-Vis absorption data for five common crystalline explosives

description: Absolute spectral absorption data for PETN, RDX, HMX, HMS and Cl-20. DOI will be referenced from a journal article so that readers can have access to the numerical data used in one of the plots.
DOI: 10.5281/zenodo.3608235
title: UV-Vis absorption data for five common crystalline explosives

description: Absolute spectral absorption data for PETN, RDX, HMX, HMS and Cl-20. DOI will be referenced from a journal article so that readers can have access to the numerical data used in one of the plots.