cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6320888
title: The aeroecology of atmospheric convergence zones: the case of Pallid swifts

description: Trans-Saharan migratory bird species encounter large scale seasonal atmospheric convergence zones, where opposing monsoon and continental air masses meet. These macro-scale atmospheric conditions determine local weather, influence migratory and foraging behaviour and seasonal bird survival rates. Here we investigate the flight behaviour of Pallid swifts (<em>Apus pallidus</em>), a small aerial insectivore, in relation to non-breeding season atmospheric conditions using state-of-the-art GPS logged data. Our analysis suggests that pallid swift prey on insects by catching them where they are most densely concentrated within the atmosphere. Residence of birds in West Africa well past the vegetation minimum suggests that the state of the vegetation and associated local insect populations are not necessarily limiting. Migration events within, to and from, the non-breeding season foraging locations might therefore not only be guided by a decline in vegetation as common metric for prey availability, but also by shifting wind directions and their concentrating effects. <strong>Supporting materials</strong> This repository includes all data to reproduce the statistics in the described study, above. Certain omissions were made due to the data volumes involved. The latter mostly pertain to the visualization of the processes involved using transects through the atmosphere. <strong>Data structure</strong> Key data is saved in compressed R serial files (.rds) in the <code>data</code> folder. The <code>position_data.rds</code> file contains bird positions, headings and ancillary data to support most of the analysis in the study. Additional rds files are included which cover spatial analysis in support of the analysis (in the analysis folder). <strong>Code execution</strong> It is best to execute code in the numeric sequence as provided in the filename. Although it should not matter for the statistical analysis. <strong>Licensing</strong> For the data include be mindful of the Open Database License (ODbL) which is a copyleft license. Reuse is permitted on the condition that any database (including aggregated working data for analysis) in which our database is used remains open as well. The authors will enforce this policy. All other material such as figures and draft manuscripts are distributed under a CC-BY-SA-4.0 license. <strong>Referencing</strong> When referencing the data cite both the data repository as: Kearsley, L. et al. 2022. Data from: The aeroecology of atmospheric convergence zones: the case of pallid swifts. – Zenodo Repository, &lt;https://doi.org/10.5281/zenodo.6320888&gt;) and the original paper (Kearsley et al. 2022, doi.org/10.1111/oik.08594).
DOI: 10.5285/29c4af5986ba4b9c8a3cfc33ca8d7c85
title: ESA Permafrost Climate Change Initiative (Permafrost_cci): Permafrost active layer thickness for the Northern Hemisphere, v2.0

description: This dataset contains permafrost active layer thickness data produced as part of the European Space Agency's (ESA) Climate Change Initiative (CCI) Permafrost project. It forms part of the first version of their Climate Research Data Package (CRDP v1). It is derived from a thermal model driven and constrained by satellite data. Grid products of CDRP v1 are released in annual files, covering the start to the end of the Julian year. The maximum depth of seasonal thaw is provided, which corresponds to the active layer thickness. Case A: It covers the Northern Hemisphere (north of 30°) for the period 2003-2017 based on MODIS Land Surface temperature merged with downscaled ERA5 reanalysis near-surface air temperature data. Case B: It covers the Northern Hemisphere (north of 30°) for the period 1997-2002 based on downscaled ERA5 reanalysis near-surface air temperature data which are bias-corrected with the Case A product for the overlap period 2003-2018 using a pixel-specific statistics for each day of the year.
DOI: 10.5285/dce27a397eaf47e797050c220972ca0e
title: ESA Soil Moisture Climate Change Initiative (Soil_Moisture_cci): Version 04.4 data collection

description: Soil Moisture data (version 04.4) from the European Space Agency's (ESA) Soil Moisture Climate Change Initiative (CCI) project. This dataset collection contains three surface soil moisture datasets, alongside ancilliary data products. The ACTIVE and PASSIVE products have been created by fusing scatterometer and radiometer soil moisture products respectively. In the case of the ACTIVE product, these have been derived from AMI-WS and ASCAT instruments and for the PASSIVE product from the instruments SMMR, SSM/I, TMI, AMSR-E, WindSat, AMSR2 and SMOS. The COMBINED product is generated from the Level 2 active and passive instruments..

The homogenized and merged products present a global coverage of surface soil moisture at a spatial resolution of 0.25 degrees. The products are provided as global daily images, in NetCDF-4 classic file format, the PASSIVE and COMBINED products covering the period (yyyy-mm-dd) 1978-11-01 to 2018-06-30 and the ACTIVE product covering 1991-08-05 to 2018-06-30. The soil moisture data for the PASSIVE and the COMBINED product are provided in volumetric units [m3 m-3], while the ACTIVE soil moisture data are expressed in percent of saturation [%]. For information regarding the theoretical and algorithmic base of the datasets, please see the Algorithm Theoretical Baseline Document (ATBD). Other additional documentation and information documentation relating to the datasets can also be found on the CCI Soil Moisture project web site or in the Product Specification Document.

The data set should be cited using the all of the following references:

1. Dorigo, W.A., Wagner, W., Albergel, C., Albrecht, F., Balsamo, G., Brocca, L., Chung, D., Ertl, M., Forkel, M., Gruber, A., Haas, E., Hamer, D. P. Hirschi, M., Ikonen, J., De Jeu, R. Kidd, R. Lahoz, W., Liu, Y.Y., Miralles, D., Lecomte, P. (2017). ESA CCI Soil Moisture for improved Earth system understanding: State-of-the art and future directions. In Remote Sensing of Environment, 2017, ISSN 0034-4257, https://doi.org/10.1016/j.rse.2017.07.001

2. Gruber, A., Dorigo, W. A., Crow, W., Wagner W. (2017). Triple Collocation-Based Merging of Satellite Soil Moisture Retrievals. IEEE Transactions on Geoscience and Remote Sensing. PP. 1-13. 10.1109/TGRS.2017.2734070

3. Liu, Y.Y., Dorigo, W.A., Parinussa, R.M., de Jeu, R.A.M. , Wagner, W., McCabe, M.F., Evans, J.P., van Dijk, A.I.J.M. (2012). Trend-preserving blending of passive and active microwave soil moisture retrievals, Remote Sensing of Environment, 123, 280-297, doi: 10.1016/j.rse.2012.03.014

4. Gruber, A., Scanlon, T., van der Schalie, R., Wagner, W., and Dorigo, W.: Evolution of the ESA CCI Soil Moisture Climate Data Records and their underlying merging methodology, Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2019-21, in review, 2019
DOI: 10.5285/b810601740bd4848b0d7965e6d83d26c
title: ESA Soil Moisture Climate Change Initiative (Soil_Moisture_cci): Version 03.3 data collection

description: Soil Moisture data (version 03.3) from the European Space Agency's (ESA) Soil Moisture Climate Change Initiative (CCI) project. This dataset collection contains three surface soil moisture datasets, alongside ancilliary data products. The 'Active' and 'Passive' products have been created by fusing scatterometer and radiometer soil moisture products respectively. In the case of the 'Active' product, these have been derived from AMI-WS and ASCAT satellite instruments and for the 'Passive' product from the instruments SMMR, SSM/I, TMI, AMSR-E, WindSat, AMSR2 and SMOS. The 'Combined Product' is then a blended product based on the former two data sets.

The homogenized and merged products present a global coverage of surface soil moisture at a spatial resolution of 0.25 degrees. The products are provided as global daily images, in NetCDF-4 classic file format, the Passive and Combined products covering the period (yyyy-mm-dd) 1978-11-01 to 2016-12-31 and the Active product covering 1991-08-05 to 2016-12-31. The soil moisture data for the Passive and the Combined product are provided in volumetric units [m3 m-3], while the active soil moisture data are expressed in percent of saturation [%]. For information regarding the theoretical and algorithmic base of the datasets, please see the Algorithm Theoretical Baseline Document (ATBD). Other additional documentation and information documentation relating to the datasets can also be found on the CCI Soil Moisture project web site or in the Product Specification Document.

The data set should be cited using all three of the following references:

1. Dorigo, W.A., Wagner, W., Albergel, C., Albrecht, F., Balsamo, G., Brocca, L., Chung, D., Ertl, M., Forkel, M., Gruber, A., Haas, E., Hamer, D. P. Hirschi, M., Ikonen, J., De Jeu, R. Kidd, R. Lahoz, W., Liu, Y.Y., Miralles, D., Lecomte, P. (2017). ESA CCI Soil Moisture for improved Earth system understanding: State-of-the art and future directions. In Remote Sensing of Environment, 2017, ISSN 0034-4257, https://doi.org/10.1016/j.rse.2017.07.001

2. Gruber, A., Dorigo, W. A., Crow, W., Wagner W. (2017). Triple Collocation-Based Merging of Satellite Soil Moisture Retrievals. IEEE Transactions on Geoscience and Remote Sensing. PP. 1-13. 10.1109/TGRS.2017.2734070

3. Liu, Y.Y., Dorigo, W.A., Parinussa, R.M., de Jeu, R.A.M. , Wagner, W., McCabe, M.F., Evans, J.P., van Dijk, A.I.J.M. (2012). Trend-preserving blending of passive and active microwave soil moisture retrievals, Remote Sensing of Environment, 123, 280-297, doi: 10.1016/j.rse.2012.03.014
DOI: 10.6073/pasta/408735b666e86228a6669a316776aae1
title: Historical shorelines for the Atlantic barrier islands of Virginia south of Chincoteague Inlet, 1949-2006

description: Historical shorelines for the Virginia barrier islands from Fishermans Island to Wallops Island were compiled from various remote sensing and ground-based sources. The COAST dataset (Dolan et al. 1978, Dolan et al. 1990) tabulated shoreline position based on historic aerial orthophotographs at transects spaced 50 meters apart located along the mid-Atlantic coast of the United States (South Carolina to New Jersey); only data for the Virginia barrier islands (1949-1988) are presented here. COASTS data are supplemented with more recent shoreline data digitized from aerial imagery (USGS 1994 and VGIN 2002) and collected with GPS (Fenster 2006). Baselines and transects used both to reconstruct the COASTS data and to produce shoreline positions and calculate shoreline rates of change using DSAS are also included. Note: there are some unresolved georeferencing issues that cause inconsistencies in the shorelines from different base data frames. Data from different data frames should be integrated with caution. Future versions of this dataset will resolve these issues.
DOI: 10.6084/m9.figshare.20137175
title: Supplementary Material for the study "How to characterize the health of an Open Source Software project? A snowball literature review of an emerging practice"

description: Supplementary Material for the study "How to characterize the health of an Open Source Software project? A snowball literature review of an emerging practice".
DOI: 10.17632/tj55ym9tb2.1
title: Object-relational and object-NoSQL database mapping frameworks.

description: This data set entails an overview of existing object-database mapping frameworks; including object-relational and object-NoSQL database mappers. The listed frameworks are cataloged per object-oriented programming language, and compared on database support for relational databases and NoSQL databases.
DOI: 10.25912/5ca408d24d554
title: Queensland fruit fly - overwintering population data
DOI: 10.5281/zenodo.2673050
title: Dataset for genes and gene variants from familial gastroschisis

description: The dataset consists of records from whole exome sequecing and bioinformatic analysis which includes genes and gene variants from a Mexican family with recurrence for gastroschisis (two affected half-sisters with gastroschisis, mother, and father of the proband).

Release of this dataset was based on the Human Genome annotation, GRCh37/hg19.

The full list of tables is described in the file READ ME and remain available in csv files.
description: {"references": ["Zerbino DR, Achuthan P, Akanni W, Amode MR, Barrell D, Bhai J, et al. Ensembl 2018. Nucleic Acids Res 2018;46:D754-D761.", "SNP & Variation Suite \u2122, Version 8x. (2018, August 31). Golden Helix Inc. Retrieved from http://www.goldenhelix.com", "Wheeler DL, Barrett T, Benson DA, Bryant SH, Canese K, Church DM, et al. Database resources of the national center for biotechnology information. Nucleic Acids Res 2005;33:D39-D45.", "Szklarczyk D, Morris JH, Cook H, Kuhn M, Wyder S, Simonovic M, et al. The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible. Nucleic Acids Res 2017;45:D362\u2013D368."]}
DOI: 10.57745/vlyy4r/zf41yf
title: Xnematophila_F1.filtered.motifs.gff

description: epigenetic data
DOI: 10.57745/vlyy4r/5uopfl
title: Xnematophila_F1.motifs.tab

description: DNA methyltransferase motifs
DOI: 10.57745/fvw8sy/vp8xit
title: Xkozodoii_FR74.motifs.tab

description: DNA methyltransferase motifs
DOI: 10.57745/fvw8sy/3szkvs
title: Xkozodoii_FR74.motifs.gff

description: epigenetic data
DOI: 10.57745/oxghdo/pjowa2
title: Xkozodoii_FR71.motifs.gff

description: epigenetic data
DOI: 10.57745/oxghdo/romhtk
title: Xkozodoii_FR71.motifs.tab

description: DNA methyltransferase motifs
DOI: 10.5281/zenodo.7092171
title: Rawdata Coller and Morelli

description: rawdata for article "PEDOLOGICAL ORIGIN AND ANTHROPIC ACTIVITIES DRIVE SOIL BIOTA COMPOSITION AND DIVERSITY IN VINEYARD SOILS OF NORTH-EAST ITALY"
DOI: 10.5281/zenodo.7092170
title: Rawdata Coller and Morelli

description: rawdata for article "PEDOLOGICAL ORIGIN AND ANTHROPIC ACTIVITIES DRIVE SOIL BIOTA COMPOSITION AND DIVERSITY IN VINEYARD SOILS OF NORTH-EAST ITALY"
DOI: 10.57745/iw6ggb/wjatbb
title: Xkozodoii_FR48.motifs.gff

description: epigenetic data
DOI: 10.57745/iw6ggb/xa6van
title: Xkozodoii_FR48.motifs.tab

description: DNA methyltransferase motifs
DOI: 10.6084/m9.figshare.21154750
title: raw data of Figure 3.pdf

description: FMN promoted proliferation of primary hippocampal neurons via inhibition of OGD-induced mitochondria injury by modulating mitochondrial complex I and V, as well as the generation of ATP and ROS. Furthermore, PKA/CREB signaling pathway is demonstrated be regulated directly by FMN to protect mitochondria by using the PKA inhibitor H-89.
DOI: 10.6084/m9.figshare.21154750.v1
title: raw data of Figure 3.pdf

description: FMN promoted proliferation of primary hippocampal neurons via inhibition of OGD-induced mitochondria injury by modulating mitochondrial complex I and V, as well as the generation of ATP and ROS. Furthermore, PKA/CREB signaling pathway is demonstrated be regulated directly by FMN to protect mitochondria by using the PKA inhibitor H-89.
DOI: 10.48544/2e29c6f8-992c-469c-9d6b-9bed0799e6b7
title: Fake News (Student version)
DOI: 10.48544/f964acde-e272-4dad-84d0-2d3bfd9875b4
title: Ethical Cycle (Educational Format)
DOI: 10.5281/zenodo.7092228
title: Observed Indian Ocean Warming Trend Applied to the IPSL-CM6A-LR model

description: This experiment applies the observed warming trend of the tropical Indian Ocean (0.15 deg C per decade; Hu and Fedorov, 2019) to the tropical Indian Ocean region in the IPSL-CM6A-LR pre-industrial control run. The methods of nudging are defined in Ferster et al. (2021), where here we apply an observed warming rate rather than a constant (as in Ferster et al., 2021). This experiment relates to the submitted article entitled <em>Variations in tropical Indian Ocean SST drive multi-decadal AMOC variability in models and observations</em>. *The datasets are created from the IPSL-CM6A-LR output files **This version serves as a preliminary version of the dataset for publication purposes, additional output is available.
DOI: 10.5281/zenodo.7092227
title: Observed Indian Ocean Warming Trend Applied to the IPSL-CM6A-LR model

description: This experiment applies the observed warming trend of the tropical Indian Ocean (0.15 deg C per decade; Hu and Fedorov, 2019) to the tropical Indian Ocean region in the IPSL-CM6A-LR pre-industrial control run. The methods of nudging are defined in Ferster et al. (2021), where here we apply an observed warming rate rather than a constant (as in Ferster et al., 2021). This experiment relates to the submitted article entitled <em>Variations in tropical Indian Ocean SST drive multi-decadal AMOC variability in models and observations</em>. *The datasets are created from the IPSL-CM6A-LR output files **This version serves as a preliminary version of the dataset for publication purposes, additional output is available.
DOI: 10.5281/zenodo.7092268
title: Calculation results for "Atmospheric oxidation of imine derivative of piperazine initiated by OH radical"

description: Results from quantum chemical calculations done for publication titled "Atmospheric oxidation of imine derivative of piperazine initiated by OH radical".
DOI: 10.5281/zenodo.7092267
title: Calculation results for "Atmospheric oxidation of imine derivative of piperazine initiated by OH radical"

description: Results from quantum chemical calculations done for publication titled "Atmospheric oxidation of imine derivative of piperazine initiated by OH radical".
DOI: 10.25442/hku.21080821.v1
title: HKU956: Dataset in "Detecting Music-Induced Emotion Based on Acoustic Analysis and Physiological Sensing: A Multimodal Approach"

description: Introduction HKU956 is a multimodal dataset for analyzing listeners’ emotions and physiological responses induced by music. Five kinds of peripheral physiological signals (i.e., heart rate, electrodermal activity, blood volume pulse, inter-beat interval, and skin temperature) of 30 participants (18 females) were recorded as they listened to music within a period of 40 minutes. Each participant listened to 10 or more songs, and their physiological signals were aligned with the 956 listening records. Participants reported their emotions induced by each song in the arousal and valence dimensions in a scale of [-10, 10]. In addition, participants' personality traits were measured by the Ten Item Personality Measure (TIPI). The raw score in each of the five personality dimensions were presented, together with “high” or “low” categories derived from the TIPI norms provided by Gosling (https://gosling.psy.utexas.edu/scales-weve-developed/ten-item-personality-measure-tipi/). Last but not least, the original audio files of a total of 592 unique music pieces were presented in this dataset. These audio files were originally obtained from Jamando.com with CC-BY Licenses. <br> <strong>Please cite the following paper when using this dataset</strong> Hu, X.; Li, F.; Liu, R. Detecting Music-Induced Emotion Based on Acoustic Analysis and Physiological Sensing: A Multimodal Approach. Applied Science. 2022, 12, x. https://doi.org/10.3390/xxxxx (free text available through Open Access)
DOI: 10.6084/m9.figshare.21154786
title: List of fields and definitions used in a data set of freshwater macroinvertebrates occurrence records from Cuba

description: List of fields and definitions used in a data set of freshwater macroinvertebrates occurrence records from Cuba. Terms and definitions are according to Darwin Core standards (dc, http://www.tdwg.org/standards/450 ), Freshwater Core Template at Freshwater Biodiversity Data Portal (fwct, https://data.freshwaterbiodiversity.eu/) and Global Biodiversity Information Facility (gbif, https://www.gbif.org )
DOI: 10.6084/m9.figshare.21154786.v1
title: List of fields and definitions used in a data set of freshwater macroinvertebrates occurrence records from Cuba

description: List of fields and definitions used in a data set of freshwater macroinvertebrates occurrence records from Cuba. Terms and definitions are according to Darwin Core standards (dc, http://www.tdwg.org/standards/450 ), Freshwater Core Template at Freshwater Biodiversity Data Portal (fwct, https://data.freshwaterbiodiversity.eu/) and Global Biodiversity Information Facility (gbif, https://www.gbif.org )
DOI: 10.48544/df67e793-d1a3-4a8e-a040-93f5acde2e93
title: Kennisclip 1 Interprofessioneel samenwerken
DOI: 10.5281/zenodo.7092323
title: GHGA_HG001_dragmap_haplotypecaller

description: Using the sarek pipeline default values. Aligned to HG38 using dragmap, and variants called using GATK's haplotypecaller. Data input was Agilent 200M WES reads. Sample A006850052
DOI: 10.5281/zenodo.7092322
title: GHGA_HG001_dragmap_haplotypecaller

description: Using the sarek pipeline default values. Aligned to HG38 using dragmap, and variants called using GATK's haplotypecaller. Data input was Agilent 200M WES reads. Sample A006850052
DOI: 10.5281/zenodo.7092300
title: GHGA_HG001_bwa_haplotypecaller

description: Using the sarek pipeline default values. Aligned to HG38 using bwa, and variants called using GATK's haplotypecaller. Data input was Agilent 200M WES reads. Sample A006850052
DOI: 10.5281/zenodo.7092299
title: GHGA_HG001_bwa_haplotypecaller

description: Using the sarek pipeline default values. Aligned to HG38 using bwa, and variants called using GATK's haplotypecaller. Data input was Agilent 200M WES reads. Sample A006850052
DOI: 10.5281/zenodo.7086070
title: Gelingensbedingungen erfolgreicher Lernortkooperation

description: Zentraler Forschungsgegenstand des Projekts ist die Untersuchung von Bedingungen einer gelingenden LoK zwischen den wesentlichen Partnern im (dualen) Ausbildungssystem, d. h. zwischen den zentralen Akteuren Lehrkräfte, Auszubildende, Bildungspersonal und Personen mit Leitungsaufgaben. Dabei liegt der Fokus auf dem gewerblich-technischen Bereich und den zugehörigen Berufen. In diesem Bereich ist auf Grund der technischen Innovationen und der erfolgten Neuordnungen von Ausbildungsberufen am ehesten eine veränderte Kooperation zu erwarten.
description: Gefördert durch das BMBF im Rahmenprogramm empirische Bildungsforschung des BMBF "Digitalisierung im Bildungsbereich"
DOI: 10.5281/zenodo.7086071
title: Gelingensbedingungen erfolgreicher Lernortkooperation

description: Zentraler Forschungsgegenstand des Projekts ist die Untersuchung von Bedingungen einer gelingenden LoK zwischen den wesentlichen Partnern im (dualen) Ausbildungssystem, d. h. zwischen den zentralen Akteuren Lehrkräfte, Auszubildende, Bildungspersonal und Personen mit Leitungsaufgaben. Dabei liegt der Fokus auf dem gewerblich-technischen Bereich und den zugehörigen Berufen. In diesem Bereich ist auf Grund der technischen Innovationen und der erfolgten Neuordnungen von Ausbildungsberufen am ehesten eine veränderte Kooperation zu erwarten.
description: Gefördert durch das BMBF im Rahmenprogramm empirische Bildungsforschung des BMBF "Digitalisierung im Bildungsbereich"
DOI: 10.6084/m9.figshare.21154792
title: Interview rubric

description: Student’s results to the interview questions before and after the intervention.
DOI: 10.6084/m9.figshare.21154792.v2
title: Interview rubric

description: Student’s results to the interview questions before and after the intervention.
DOI: 10.6084/m9.figshare.21154792.v1
title: Interview rubric

description: Student’s results to the interview questions before and after the intervention.
DOI: 10.6084/m9.figshare.19304360.v2
title: Raw Data.zip

description: This zip package includes all the raw data involving in the article "Plac8 regulates the fibrogenic ability of cardiac fibroblasts in mice with myocardial infarction" submitted to <b><i>All Life</i></b>.
DOI: 10.5281/zenodo.7086217
title: Fig10.b--Photonic and Optomechanical Thermometry

description: Data of figure 8.c depicting the Brownian motion spectra at different temperatures as well as the extracted noise temperature. The folder contains the raw mechanical spectra for each temperature and the analyzis python script.