cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15319500
title: Single-cell RNA sequencing of the ARC and MPOA across satiety and lactation states in female mice

description: These files accompany the single-cell RNA sequencing (scRNA-seq) portion of the research article "A hypothalamic circuit that modulates feeding and parenting behaviors" (Alcantara et al., 2025, Nature).

In our study, we employed 10X Genomics scRNA-seq in two hypothalamic regions — the arcuate nucleus (ARC) and the medial preoptic area (MPOA) — of 4 groups of 14-week-old female C57BL/6 mice (n = 3 mice pooled per group): sated virgins (VS), fasted virgins (VF), sated mothers (MS), and fasted mothers (MF). The litter size for the lactating mother groups was 8 pups and pups were 13-15 days old at the time of sample collection. The fasted groups were food-deprived overnight for 16-18 hours.

Raw sequencing data are in Gene Expression Omnibus (GEO) with the accession code GSE295610.

allmetadata.csv contains our annotations of all cells.

LoadProcDEGs.R loads scRNA-seq data and pre-annotated metadata (allmetadata.csv) for ARC and MPOA, filters for neurons with existing cluster labels, and performs SCTransform-based batch integration followed by PCA and UMAP visualization using those precomputed clusters. It then identifies conserved marker genes per cluster and runs pairwise differential expression analyses within each cluster across experimental conditions.

ARC-Campbell-Compare.R and MPOA-Zhuang-Compare.R compare our ARC and MPOA neuronal clusters to those of previously published scRNA-seq datasets.

ARC.clustermarks.xlsx and MPOA.clustermarks.xlsx contain the number of cells and marker genes for each neuronal cluster. 

ContributionPCA.R calculates the contribution of each neuronal cluster to the first n principal components (PCs) that explain ~85% of the variance between two experimental conditions (e.g. VF and VS).

The other Excel files contain the differentially expressed genes (DEGs) for each ARC and MPOA neuronal cluster across pairs of experimental conditions. The direction of the fold changes (avg_log2FC) corresponds to the first condition in the file name relative to the second condition. For example, in ARC.VFvVS.xlsx, genes with positive fold changes are upregulated in VF compared to VS.
DOI: 10.5281/zenodo.15319501
title: Single-cell RNA sequencing of the ARC and MPOA across satiety and lactation states in female mice

description: These files accompany the single-cell RNA sequencing (scRNA-seq) portion of the research article "A hypothalamic circuit that modulates feeding and parenting behaviors" (Alcantara et al., 2025, Nature).

In our study, we employed 10X Genomics scRNA-seq in two hypothalamic regions — the arcuate nucleus (ARC) and the medial preoptic area (MPOA) — of 4 groups of 14-week-old female C57BL/6 mice (n = 3 mice pooled per group): sated virgins (VS), fasted virgins (VF), sated mothers (MS), and fasted mothers (MF). The litter size for the lactating mother groups was 8 pups and pups were 13-15 days old at the time of sample collection. The fasted groups were food-deprived overnight for 16-18 hours.

Raw sequencing data are in Gene Expression Omnibus (GEO) with the accession code GSE295610.

allmetadata.csv contains our annotations of all cells.

LoadProcDEGs.R loads scRNA-seq data and pre-annotated metadata (allmetadata.csv) for ARC and MPOA, filters for neurons with existing cluster labels, and performs SCTransform-based batch integration followed by PCA and UMAP visualization using those precomputed clusters. It then identifies conserved marker genes per cluster and runs pairwise differential expression analyses within each cluster across experimental conditions.

ARC-Campbell-Compare.R and MPOA-Zhuang-Compare.R compare our ARC and MPOA neuronal clusters to those of previously published scRNA-seq datasets.

ARC.clustermarks.xlsx and MPOA.clustermarks.xlsx contain the number of cells and marker genes for each neuronal cluster. 

ContributionPCA.R calculates the contribution of each neuronal cluster to the first n principal components (PCs) that explain ~85% of the variance between two experimental conditions (e.g. VF and VS).

The other Excel files contain the differentially expressed genes (DEGs) for each ARC and MPOA neuronal cluster across pairs of experimental conditions. The direction of the fold changes (avg_log2FC) corresponds to the first condition in the file name relative to the second condition. For example, in ARC.VFvVS.xlsx, genes with positive fold changes are upregulated in VF compared to VS.
DOI: 10.15468/dl.fz92m2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus caribaea",
 "Country is Sierra Leone",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077632-250717081556266/datasets/export for details.
DOI: 10.15468/dl.u27v3j
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Casuarina cunninghamiana",
 "Country is Algeria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077633-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xyhwzy
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euphorbia heterophylla",
 "Country is Papua New Guinea",
 "HasCoordinate is true"
 ]
}

 The dataset includes 97 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077636-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fv6v8c
title: Occurrence Download

description: A dataset containing 207068 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Glaucidium passerinum)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 207068 records from 210 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077604-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4wa9mh
title: Occurrence Download

description: A dataset containing 3674 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crinia pseudinsignifera"
 ]
}

 The dataset includes 3674 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007328-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ppp8c3
title: Occurrence Download

description: A dataset containing 741 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vormela peregusna"
 ]
}

 The dataset includes 741 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007329-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2clkdy
title: CCDC 2192580: Experimental Crystal Structure Determination

description: Related Article: Tongtong Liu, Dongping Chen, Yunshu Cui, Sijun Xie, Xiaowen Li, Feng Liu, Dandan Zhai, Hao Li, Zhang-Jie Shi|2025|Green Synth. Cat.|||doi:10.1016/j.gresc.2025.06.007
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d7vwd
title: CCDC 2212094: Experimental Crystal Structure Determination

description: Related Article: Tongtong Liu, Dongping Chen, Yunshu Cui, Sijun Xie, Xiaowen Li, Feng Liu, Dandan Zhai, Hao Li, Zhang-Jie Shi|2025|Green Synth. Cat.|||doi:10.1016/j.gresc.2025.06.007
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l5h3d
title: CCDC 2388553: Experimental Crystal Structure Determination

description: Related Article: Róbert Diószegi, Nóra V. May, István Fábián, Norbert Lihi|2025|Dalton Trans.|54|11434|doi:10.1039/D5DT01180A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2nq79y
title: CCDC 2464230: Experimental Crystal Structure Determination

description: Related Article: Yin Zhou, Chenxu Xia, Gaolin Li, Yong Liu, Ting Xiang, Fengyun Xie, Zhan Yang, Wenbin Zhong, Zhenguo Chi, Chengjian Chen|2026|Angew.Chem.,Int.Ed.||e5567761|doi:10.1002/anie.5567761
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.18150/wt3ryu
title: Optical and EPR study of the Ce3+ luminescent centers in the Lu2SiO5:Ce single crystalline films

description: The work presents the results of optical and EPR investigations of Ce3+ incorporation into Lu2SiO5 single crystalline films (LSO:Ce SCFs), grown using the liquid phase epitaxy method. It also examines the conversion of Ce valence state as a result of the LSO:Ce SCF thermal treatment in reducing and oxygen-rich atmospheres. The EPR study revealed the presence of only one type of Ce3+ center (Ce1), corresponding to the localization of Ce3+ ions in sevenfold coordinated positions within the Lu2SiO5 host. No spectra of Ce2 centers (sixfold coordinated Ce3+ positions) were detected in the LSO:Ce SCF films, indicating their negligibly small concentration. High-temperature annealing of the as grown films in air reduces the concentration of Ce3+ ions to a level undetectable by EPR, due to the Ce3+ Ce4+ conversion. In contrast, thermal treatment in a 95%N2 + 5%H2 reducing atmosphere results in the opposite Ce4+ Ce3+ conversion, substantially increasing the concentration of Ce3+. The oxidation/reduction treatment and Ce³⁺/Ce⁴⁺ valence state changing lead to notable variations in the scintillation light yield and decay kinetics of the LSO:Ce SCFs, offering a method to tune their scintillation figure of merit.
DOI: 10.5517/ccdc.csd.cc2nq7c0
title: CCDC 2464232: Experimental Crystal Structure Determination

description: Related Article: Yin Zhou, Chenxu Xia, Gaolin Li, Yong Liu, Ting Xiang, Fengyun Xie, Zhan Yang, Wenbin Zhong, Zhenguo Chi, Chengjian Chen|2026|Angew.Chem.,Int.Ed.||e5567761|doi:10.1002/anie.5567761
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2nq7d1
title: CCDC 2464233: Experimental Crystal Structure Determination

description: Related Article: Yin Zhou, Chenxu Xia, Gaolin Li, Yong Liu, Ting Xiang, Fengyun Xie, Zhan Yang, Wenbin Zhong, Zhenguo Chi, Chengjian Chen|2026|Angew.Chem.,Int.Ed.||e5567761|doi:10.1002/anie.5567761
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kzg01
title: CCDC 2382753: Experimental Crystal Structure Determination

description: Related Article: Sagnik Chakrabarti,  Ju Byeong Chae,  Katy A. Knecht,  Nicholas D. Cedron,  Toby J. Woods,  Liviu M. Mirica|2026|Nat. Catal.|||doi:10.1038/s41929-025-01473-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kzg12
title: CCDC 2382754: Experimental Crystal Structure Determination

description: Related Article: Sagnik Chakrabarti,  Ju Byeong Chae,  Katy A. Knecht,  Nicholas D. Cedron,  Toby J. Woods,  Liviu M. Mirica|2026|Nat. Catal.|||doi:10.1038/s41929-025-01473-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kzg23
title: CCDC 2382755: Experimental Crystal Structure Determination

description: Related Article: Sagnik Chakrabarti,  Ju Byeong Chae,  Katy A. Knecht,  Nicholas D. Cedron,  Toby J. Woods,  Liviu M. Mirica|2026|Nat. Catal.|||doi:10.1038/s41929-025-01473-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2nzckl
title: CCDC 2472050: Experimental Crystal Structure Determination

description: Related Article: Luca Vedani, Andryj M. Borys, Katharina Rachuy, Regine Herbst-Irmer, Dietmar Stalke, Eva Hevia|2025|J.Am.Chem.Soc.|||doi:10.1021/jacs.5c14047
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2nzclm
title: CCDC 2472051: Experimental Crystal Structure Determination

description: Related Article: Luca Vedani, Andryj M. Borys, Katharina Rachuy, Regine Herbst-Irmer, Dietmar Stalke, Eva Hevia|2025|J.Am.Chem.Soc.|||doi:10.1021/jacs.5c14047
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2pccl1
title: CCDC 2483583: Experimental Crystal Structure Determination

description: Related Article: Kaisheng Wang, Koshiro Isono, Hideaki Takano, Juwon Oh, Shohei Kawakami, Ryota Sugimori, Ryohei Kishi, Daiki Shimizu, Sandipa Bhandari, Masatoshi Ishida, Dongho Kim, Hiroshi Shinokubo|2025|J.Am.Chem.Soc.|||doi:10.1021/jacs.5c15893
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2pccm2
title: CCDC 2483584: Experimental Crystal Structure Determination

description: Related Article: Kaisheng Wang, Koshiro Isono, Hideaki Takano, Juwon Oh, Shohei Kawakami, Ryota Sugimori, Ryohei Kishi, Daiki Shimizu, Sandipa Bhandari, Masatoshi Ishida, Dongho Kim, Hiroshi Shinokubo|2025|J.Am.Chem.Soc.|||doi:10.1021/jacs.5c15893
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.27084040
title: Test results of eMOSAIC

description: Predicted pKi, actual pKi, predicted residues, and actual residues from eMOSAIC deep learning model.
DOI: 10.6084/m9.figshare.27084040.v1
title: Test results of eMOSAIC

description: Predicted pKi, actual pKi, predicted residues, and actual residues from eMOSAIC deep learning model.
DOI: 10.15468/dl.e2gn28
title: Occurrence Download

description: A dataset containing 170 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abies densa Griff."
 ]
}

 The dataset includes 170 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007487-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e208462v1-175846
title: U.S. State and Local Tax Rates, 1975 - 2022

description: We develop a dataset of state (1977–2022)
and local (2000–2022) tax rates from personal income, corporate income, property,
sales, and excise taxes. We utilize sources such as NBER TaxSim, Tax Foundation, CCH CorpSystem, state and local level
tax authority websites (typically the department of revenue or equivalent body), as well as data from
other research. For each state and local tax type, we collect annual data going back in time as far
possible. Local jurisdictions include everything from city and county governments to overlapping
taxing geographies defined by local school boundaries, water and fire districts, or even specially
constructed business tax districts. We aggregate local tax rates to the county level as this represents a stable and well-defined geographic mapping that is non-overlapping and corresponds well to other available measures of governmental oversight and economic activity.
DOI: 10.3535/14e-mev-4t8
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6bw-k4p-q1e
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g40-bk1-jd5
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n74-fcv-lf0
title: Hibolithes

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2bq-g13-lxx
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h99-svb-2jb
title: Cribroelphidium poeyanum (d'Orbigny, 1839)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5cm-hrf-1g1
title: Sigmoilopsis schlumbergeri (Silvestri, 1904)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/csf-4zf-2fq
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5fn-g8f-fyk
title: Cycloforina granulocostata (Germeraad, 1946)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s55-wr7-0w4
title: †Acrocythere rectangula Michelsen, 1975

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xk0-4c5-zaa
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/64a-gb6-wq4
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d93-v6b-kk1
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5yq-zs4-70c
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ayb-9em-4bw
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0xm-pn6-zy0
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ear-fk4-c6n
title: Pseudobelus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j3y-phn-614
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l77-qhk-geq
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j3q-ylz-jx0
title: Pseudothurmannia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5pm-116-vh8
title: Dicerorhinus Gloger, 1841

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fnj-wqv-k6w
title: †Veenia Butler & Jones, 1957

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x5y-zjz-rtq
title: Cervus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fr9-6hr-5sh
title: †Globorotalia menardii (d'Orbigny in Parker, Jones & Brady, 1865)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ma7-mnw-8gg
title: †Lytoceras subfimbriatum (d'Orbigny, 1841)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m9k-td1-n3k
title: Pullenia subcarinata (d'Orbigny, 1839)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.