cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18221486
title: Data and code for: Spatial capture-recapture reveals resource use and declining skipper numbers in Baltic Sea salmon trolling fisheries

description: This folder contains files associated with portions of the data and analyses for the manuscript:

"Spatial Capture–Recapture Reveals Resource Use and Decreasing Numbers of Skippers in the Recreational Salmon Trolling Fishery in the Baltic Sea."by Konrad Karlsson

Not all data are included, because skipper identities should not be revealed. The included data have been anonymized.

WORKFLOW

The files "rsfDF.Rdata" (resource-selection data frame) and "trolling_scrFrame.Rdata" are loaded by the script "run trolling SCR models - for manuscript.R".

After the models are run, they are saved as "telemetry_trolling_models.Rdata" (already included).

To produce the manuscript tables, load "telemetry_trolling_models.Rdata" in the scripts "table2 AIC table.R" and "table3 model summary statistics.R". These generate Table 2 and Table 3, respectively.

FIGURES

The script "Fig3b cap prob area and Fig4 sex session b sigma.R" contains code to produce Figure 3b and Figure 4.Note: Residency is a binary individual covariate and is included as "sex" in the model formula.

SENSITIVITY ANALYSIS

The folder "Sensitivity of SCR–RSF results to telemetry sampling" includes the "scrFrame.Rdata" files used to estimate parameters under different telemetry resampling schemes. The resulting models are stored as ".Rdata" files.

These models are run with "run additional trolling SCR models with alternative telemetry resampling schemes.R".

Parameter estimates from these models are plotted in Figure 5 using "Fig5 plot estimates from SCR models with alternative telemetry resampling schemes.R".
DOI: 10.15468/dl.v2j6fq
title: Occurrence Download

description: A dataset containing 15890 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Arthropoda"
 ]
}

 The dataset includes 15890 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011591-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4jgddm
title: Occurrence Download

description: A dataset containing 1586 species occurrences available in GBIF matching the query:
{
 "RecordedBy" : [
 "is cgbolas"
 ]
}

 The dataset includes 1586 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011593-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v7vuxv
title: Occurrence Download

description: A dataset containing 7958 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lycium chinense"
 ]
}

 The dataset includes 7958 records from 395 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011594-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aw45w4
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_2_GID","value":"CHN.28.15_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011595-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vbchfk
title: Occurrence Download

description: A dataset containing 179 species occurrences available in GBIF matching the query:
{
 "RecordedBy" : [
 "is fortytwoacres"
 ]
}

 The dataset includes 179 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011597-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18096100
title: Eucalyptus Stem Dataset for Selective Thinning Operations

description: The Eucalyptus Stem Dataset provides annotated images for tree stem segmentation, supporting robotic eucalyptus selective thinning operations. The data were collected in Portuguese forest areas located in Quinta Rei (Valongo, Portugal). All images were captured using an OAK-D S2 camera at a resolution of 1040 × 780 pixels.
DOI: 10.5281/zenodo.18096101
title: Eucalyptus Stem Dataset for Selective Thinning Operations

description: The Eucalyptus Stem Dataset provides annotated images for tree stem segmentation, supporting robotic eucalyptus selective thinning operations. The data were collected in Portuguese forest areas located in Quinta Rei (Valongo, Portugal). All images were captured using an OAK-D S2 camera at a resolution of 1040 × 780 pixels.
DOI: 10.15468/dl.7j2peh
title: Occurrence Download

description: A dataset containing 45677 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nicandra physalodes"
 ]
}

 The dataset includes 45677 records from 656 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011592-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zq6q36
title: Occurrence Download

description: A dataset containing 9068 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Korea, Republic of",
 "TaxonKey is Ardea alba modesta J.E.Gray, 1831"
 ]
}

 The dataset includes 9068 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011516-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dn9dw5
title: Occurrence Download

description: A dataset containing 2416 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((15.62637 41.75404,75.77988 41.75404,75.77988 65.78813,15.62637 65.78813,15.62637 41.75404))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bryonia alba L."
 ]
}

 The dataset includes 2416 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011517-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60893/figshare.apl.28928027
title: Towards heralded single-photon storage via chiral-cavity-enhanced spontaneous Raman scattering

description: The dependence of the cross-correlation function on the storage time 
The dependence of the excitation probability on the power of the write pulse
DOI: 10.15468/dl.kefj5j
title: Occurrence Download

description: A dataset containing 67760 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Fragaria L."
 ]
}

 The dataset includes 67760 records from 762 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006213-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60893/figshare.apl.28946252
title: Supplement Number 1

description: calculation methods, the detailed results for H2 molecules adsorbed on BC2N monolayer; the stabilities and electronic properties of the charged BC2N monolayer; the effect of strain and charge on H2 adsorption on BC2N monolayer; the adsorption configurations of H2 on BC2N monolayer.
DOI: 10.60893/figshare.apl.28946252.v1
title: Supplement Number 1

description: calculation methods, the detailed results for H2 molecules adsorbed on BC2N monolayer; the stabilities and electronic properties of the charged BC2N monolayer; the effect of strain and charge on H2 adsorption on BC2N monolayer; the adsorption configurations of H2 on BC2N monolayer.
DOI: 10.60893/figshare.apl.28908083
title: Supplementary material

description: Supplementary material
DOI: 10.60893/figshare.apl.28908083.v1
title: Supplementary material

description: Supplementary material
DOI: 10.60893/figshare.apl.28898993
title: Supporting information

description: Supporting information for Tunable metamaterial with quantitatively switchable anapole modes via quasi-BIC using two methods
DOI: 10.60893/figshare.apl.28898993.v1
title: Supporting information

description: Supporting information for Tunable metamaterial with quantitatively switchable anapole modes via quasi-BIC using two methods
DOI: 10.15468/dl.hmw3zy
title: Occurrence Download

description: A dataset listing the 518 species recorded in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((9.17848 -1.60951,9.03962 -1.4319,8.98795 -1.36731,8.96211 -1.22199,8.88138 -1.08636,8.82648 -0.99271,8.7845 -0.90229,8.73929 -0.78927,8.70377 -0.75051,6.99224 -0.75051,7.02453 -2.53632,8.30333 -2.5234,9.17848 -1.60951))"
 ]
}

 The dataset's 518 records were derived from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006223-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d69nhh
title: Occurrence Download

description: A dataset containing 24052 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Streptopelia orientalis (Latham, 1790)",
 "HasCoordinate is true",
 "Year is greater than 1989",
 "Year is less than 2026",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is Absent"
 ]
 }
 },
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 24052 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006231-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xt2m9b
title: Occurrence Download

description: A dataset containing 114364 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Marrubium L."
 ]
}

 The dataset includes 114364 records from 756 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006221-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60893/figshare.jap.28920395.v1
title: Ultrafast Charge Transfer in Two-dimensional Black Phosphorus/SiS van der Waals Heterostructure for Photoconversion

description: See the supplementary material for methodology, text of CONTCAR file, band structures of BP and SiS calculated by HSE06, interlayer distance oscillation dynamics, and band structure of BP/SiS heterostructure calculated by PBE and HSE06.
DOI: 10.60893/figshare.jap.28920395
title: Ultrafast Charge Transfer in Two-dimensional Black Phosphorus/SiS van der Waals Heterostructure for Photoconversion

description: See the supplementary material for methodology, text of CONTCAR file, band structures of BP and SiS calculated by HSE06, interlayer distance oscillation dynamics, and band structure of BP/SiS heterostructure calculated by PBE and HSE06.
DOI: 10.60893/figshare.jap.28861241
title: raw data for table 1 in JAP: MS #JAP25-AR-00963

description: These data are related to a study centered on polyelectrolyte elastomers. Through experimental mechanical characterizations-including tensile, hysteresis, and relaxation tests-the effects of network structure and strain rates on the material's responses are investigated. The results reveal significant rate dependence and Mullins effect. To model these behaviors, the Yeoh hyperelastic model, incorporating the Mullins effect, is employed to describe the nonlinear elastic response, while a nonlinear power law model is introduced to capture the time-dependent viscoelastic deformation. The proposed modeling framework demonstrates excellent agreements with experimental data, effectively capturing the complex mechanical behaviors in various tests. This study provides valuable insights into the visco-hyperelastic behaviors of polyelectrolyte elastomers by mapping microscopic molecular structures to macroscopic mechanical performance.
DOI: 10.15468/dl.6ymfc6
title: Occurrence Download

description: A dataset containing 494145983 species occurrences available in GBIF matching the query:
{
 "Year" : [
 "2020-2021"
 ]
}

 The dataset includes 494145983 records from 18027 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039150-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48802/owey.vtg6-a567
title: Expression of immune-related genes in the Milieu Intérieur cohort

description: Matrix of gene expression values for 560 genes (as column) for 1000 donors of the Milieu Intérieur cohort (as row) after stimulation by 9 pathogenic stimulis (Null, E coli, BCG, S aureus, Candida, Flu, SEB, LPS, Poly IC).
description: We stimulated 1ml of whole blood in TrueCulture tubes in 9 experimental conditions ( E. coli, S. aureus, BCG, C. albicans, Flu, SEB, LPS, Poly IC, Null). The expression of 560 immune-related genes is measured before and after immune stimulation in the 1,000-donor cohort using NanoString hybridization arrays, which produce highly reproducible transcriptional data
DOI: 10.5517/ccdc.csd.cc2m3xth
title: CCDC 2416847: Experimental Crystal Structure Determination

description: Related Article: Wangyuan Zhan, Sai Wang, Kaiyi Zhao, Deguang Huang, Xiaofeng Zhang|2025|Z.Anorg.Allg.Chem.|651|e202500051|doi:10.1002/zaac.202500051
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.22002/n7vbr-qd652
title: Campylobacter jejuni

description: Session notes: High magnification tomograms of whole FlgQ mutant Campylobacter cells. Tilt series notes: Cell pole on carbon. Tilt series jumpy, but should reconstruct OK. Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2010-08-30</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-59.0°, 64.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-08-30-7/rawdata/</p>10aug30a_Campy_FlgQ_006.st,  Tilt Series (Pixel Size 0.512 nm), 696.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-08-30-7/rawdata/10aug30a_Campy_FlgQ_006.st"
        > <i class="download icon"></i> Download </a></p>

        10aug30a_Campy_FlgQ_006_bin2x_SIRT.rec,  Reconstruction (Pixel Size 1.024 nm), 27.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-08-30-7/3dimage_21103/10aug30a_Campy_FlgQ_006_bin2x_SIRT.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/w9knn-kry88
title: Salmonella typhimurium

description: Session notes: WT Salmonella minicell-producing strain, 5x conc. Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-03-02</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-70.0°, 70.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-03-02-12/rawdata/</p>11mar02a_WTMinicells_043.st,  Tilt Series (Pixel Size 0.774 nm), 612.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-03-02-12/rawdata/11mar02a_WTMinicells_043.st"
        > <i class="download icon"></i> Download </a></p>

        11mar02a_WTMinicells_043_bin1x_SIRT.rec,  Reconstruction (Pixel Size 0.774 nm), 3.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-03-02-12/3dimage_21773/11mar02a_WTMinicells_043_bin1x_SIRT.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/3cstw-7n060
title: Campylobacter jejuni

description: Session notes: Medium magnification tomograms of fliI knockout Campylobacter cells Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-04-12</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-04-12-20/rawdata/</p>11apr12a_fliI_011.st,  Tilt Series (Pixel Size 0.774 nm), 738.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-04-12-20/rawdata/11apr12a_fliI_011.st"
        > <i class="download icon"></i> Download </a></p>

        11apr12a_fliI_011.rec,  Reconstruction (Pixel Size 1.548 nm), 26.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-04-12-20/3dimage_22785/11apr12a_fliI_011.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/6aw3c-88k81
title: Campylobacter jejuni

description: Session notes: Campy motA deletion mutant. Filtered to ~5.6nm resolution. Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-12-30</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.5°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-12-30-4/rawdata/</p>11dec30a_motA_0006.st,  Tilt Series (Pixel Size 0.774 nm), 743.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-12-30-4/rawdata/11dec30a_motA_0006.st"
        > <i class="download icon"></i> Download </a></p>

        11dec30a_motA_0006.rec,  Reconstruction (Pixel Size 0.78 nm), 10.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-12-30-4/3dimage_22349/11dec30a_motA_0006.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.t3mjd7
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Artemisia absinthium",
 "Country is Chile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 22 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037925-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/y20mg-2sw41
title: Campylobacter jejuni

description: Session notes: Campy cjj0413 deletions Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-09-28</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: -1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-28-14/rawdata/</p>12sep28a_cjj0413_0021.st,  Tilt Series (Pixel Size 0.512 nm), 630.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-28-14/rawdata/12sep28a_cjj0413_0021.st"
        > <i class="download icon"></i> Download </a></p>

        12sep28a_cjj0413_0021.rec,  Reconstruction (Pixel Size 1.12 nm), 47.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-28-14/3dimage_23027/12sep28a_cjj0413_0021.rec"
        > <i class="download icon"></i> Download </a></p>