cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/lprjih
title: Fertilisers used in MEANS-InOut: compositions and characteristics useful for environmental assessment

description: This dataset lists the fertilisers available in the MEANS-InOut software and their main characteristics. The fertilisers concerned are organic fertilisers, mineral fertilisers, soil improvers (calcium, dolomitic) and mineral-based products that do not contain N, P or K. The characteristics of the fertilisers taken into account are: nitrogen (N), phosphorus (P), potassium (K), seven heavy metals, and direct emission model parameters. The mapping between these fertilisers and Life Cycle Inventories (LCI) from reference databases (ecoinvent, Agribalyse) will be included in another dataset. Ce jeu de données liste les engrais disponibles dans le logiciel MEANS-InOut et leurs principales caractéristiques. Les engrais concernés sont des engrais organiques, des engrais minéraux, ainsi que des amendements (calcique, dolomitique) ou des produits à base de minéraux mais ne contenant pas de N, P ou K. Les caractéristiques des engrais prises en compte sont : teneurs en azote (N), phosphore (P, sous forme P2O5), potassium (K sous forme K2O), en sept éléments traces métalliques, et des paramètres de modèles d'émissions directes associés à ces engrais. La correspondance entre ces engrais et des Inventaires de Cycle de Vie (ICV) de bases de données de référence (ecoinvent, Agribalyse) fera l'objet d'un autre jeu de données.
DOI: 10.57745/msgwxc
title: Données de réplication pour : Genetic and technological diversity of Streptococcus thermophilus isolated from the Saint-Nectaire PDO cheese-producing area

description: Genome sequence, annotations and data analyses related to the publication.
DOI: 10.57745/ngnchn
title: Visual-Verbal Paired Associate Learning: an Investigation of the Role of Verbal and Crossmodal Associative Learning in Reading Skills in French first and second Grade Children

description: A file containing the data and a file describing the variables. The aim of the study was to investigate the contribution of visual-verbal paired associate learning to reading ability. To this end, children in first and second grade completed various tasks including word reading and visual-verbal paired associate learning. The data correspond to the socio-demographic characteristics of the sample (e.g. age, gender, socio-economic status) and the test results. The results are currently being published in the Journal of Educational Psychology.
DOI: 10.57745/nlxpdb
title: DISTAPRO Tool for creating consumption mixes in AGRIBALYSE®

description: Dans le cadre des travaux du GIS REVALIM et de la construction d'inventaires de cycle de vie pour AGRIBALYSE®, cet outil simplifié a pour objectif de permettre à un praticien ACV de calculer facilement le transport (distances parcourues et modes de transport) d'un ingrédient selon ses provenances et ainsi créer le mix de consommation (appelé "consumption mix" dans AGRIBALYSE®) de l’ingrédient.
DOI: 10.57745/jceoea
title: Dataset on forest structure parameters influencing the Black Woodpecker's preference for cavity excavation site

description: The data comprise a set of parameters measured on a multisite network of study plots (located in a wide range of forest stands in mainland France, both in mountains and lowlands) designed to estimate the stand structural preferences of the Black Woodpecker in choosing an excavating site. The characteristics of forest plots centred on a cavity tree (Type="CA") were compared with control plots (Type='CT") without cavities (40 for each of the two modalities). The parameters studied, calculated for each of the 80 plots, were as follows: Total Basal Area (‘BA.LT’), Mean Diameter at Breast Height (‘DBH.LT’), Density of Living Trees (‘N.LT’), Total Volume of Living Trees (‘V.LT’), Diameter Distribution (‘DBH. SKEW’ and ‘DBH. CV"), the composition (percentage of beech: “P.BEECH”), the abundance of the woody understorey (density of young trees: “SD”) and the medium understorey (density of small trees: “STD”), the volume of dead wood (total volume of dead wood lying: “LDV”; total volume of dead wood standing: “SDV”).
DOI: 10.57745/kn3ehi
title: Données en annexes issues de la thèse : "Caractérisation des hétérogénéités réservoirs dans les carbonates continentaux du Cénozoïque du bassin de Paris : Liens entre faciès sédimentaire, diagénèse et propriétés pétrophysiques" de Kévin Moreau (2023) (Characterization of reservoir heterogeneities in Cenozoic continental carbonates of the Paris Basin: Links between sedimentary facies, diagenesis and petrophysical properties)

description: La thèse de Kévin Moreau portait sur l’étude des propriétés résevoirs des carbonates continentaux cénozoïques du bassin de Paris. Ce travail a permis d’obtenir de nombreuses données géochimiques (isotopie du carbone et de l’oxygène, concentration des éléments des terres rares, datation par U-Pb) acquises sur des ciments de calcite et des données de pétrophysiques (valeurs de porosité, de perméabilité et de vitesses acoustiques) dans ces carbonates, dont les jeux de données sont répertoriés ici. Ainsi, sont présents des tableaux de données sur l’isotopie du carbonate (Annexes_Chap4_isotope.docx), sur l’isotopie des ciments (Annexes_Chap5_isotope.xlsx), de la concentration des éléments des terres rares (Annexes_Chap5_REE.xlsx), ainsi que les données et leur traitement pour la datation U-Pb (Annexes_Chap5_UPb.xlsx et Annexes_Chap6_UPb.xlsx) et les mesures des propriétés pétrographiques et pétrophysiques des carbonates (Annexes_Chap7_petrophy.xlsx). Plus d’informations sont présentes dans le manuscrit de thèse, dans les chapitres dédiés explicitement donnés dans la nomenclature des fichiers. Kévin Moreau's phD thesis focused on the study of the reservoir properties of Cenozoic continental carbonates in the Paris Basin. This work provided numerous geochemical data (carbon and oxygen isotopes, rare earth element concentrations, U-Pb dating) acquired on calcite cements and petrophysical data (porosity, permeability and acoustic velocity values) in these carbonates, the data sets for which are listed here. There, tables of carbonate isotope data (Annexes_Chap4_isotope.docx), cement isotope data (Annexes_Chap5_isotope.xlsx), concentration of rare earth elements (Annexes_Chap5_REE. xlsx), as well as data and processing for U-Pb dating (Annexes_Chap5_UPb.xlsx and Annexes_Chap6_UPb.xlsx) and measurements of the petrographic and petrophysical properties of carbonates (Annexes_Chap7_petrophy.xlsx) are present. More information can be found in the manuscript, in the dedicated chapters explicitly given in the file nomenclature.
DOI: 10.57745/kuqkwz
title: Horses can learn to identify joy and sadness against other basic emotions from human facial expressions

description: Data associated with the paper "Horses can learn to discriminate human facial expressions of sadness and joy from each other and from those of fear, anger, surprise and disgust"
DOI: 10.57745/kzqzx4
title: ITK-AGROSYST-2020

description: Fichiers d'export des interventions culturales saisies dans AGROSYST pour la campagne agricole 2020. Un fichier par onglet exporté (le fichier est vide s'il n'y a pas de données dans l'onglet exporté). La description des données, valable pour toutes les campagnes, est consultable dans le jeu de données "Métadonnées ITK".
DOI: 10.57745/likogd
title: MEDITERRANEA: a Demogenetic Agent-Based Model to simulate hybridization dynamics in brown trout.

description: The present files contain a standalone version of the MEDITERRANEA DG-ABM, a model that simulates eco-evolutionary dynamics in wild brown trout populations, with a focus on the interactions and hybridization between the Mediterranea and Atlantic lineages. A simple user manual is provided (in French language) in an asscoaited PDF file. A complete description of the model structure can be found in Folio 2022: https://theses.hal.science/tel-04122411
DOI: 10.57745/ljngxa
title: Deliverable D3.1 Assessment Indicators - Baseline - CS-Bel

description: This file is part of the deliverable D3.1 of the European H2020 FAIRCHAIN. It structures all the data relevant for the description of the initial value chain (baseline) of the case study in Belgium (CS-Bel). The description of the baseline covers the dimensions of co-creation business models and sustainability including environmental, economic and social perspectives.
DOI: 10.57745/n6qm41
title: Heterogeneous identity, stiffness and growth characterise the shoot apex of Arabidopsis stem cell mutants

description: This data set contains raw data used in the article "Heterogeneous identity, stiffness and growth characterise the shoot apex of Arabidopsis stem cell mutants".
DOI: 10.57745/neajwn
title: Kilns specifications

description: Specifications of the rotary kilns used for these experiments
DOI: 10.57745/o14zzr
title: OSO vecteur 2021 - Département de l'Ardèche

description: Produit vectoriel de l'occupation du sol OSO 2021 sur le département de l'Ardèche
DOI: 10.57745/onv9wx
title: Raw data supporting Figure 1 and Figure 2 from "Contribution of the Galleria mellonella model to decipher host pathogen interactions from Staphylococcus aureus derivative extracellular vesicles "

description: Data supporting Figure 1 and Figure 2 from "Contribution of the Galleria mellonella model to decipher host pathogen interactions from Staphylococcus aureus derivative extracellular vesicles"
DOI: 10.57745/oq323z
title: LPT Ontology

description: Une ontologie conçue pour illustrer les types de problèmes de liaison (LPT) afin d'aider la communauté du data linking.
DOI: 10.57745/lczxzq
title: Numérotation qualité échantillons Nivelle

description: La Nivelle est un petit fleuve côtier de la côte basque. Depuis plus de trente ans des données (essentiellement tissus et écailles) sont régulièrement collectées sur la rivière via les pêches à l'électricité, les captures aux stations de contrôle (passes à poissons) et sur les différents projets de recherche qui se déclinent sur le terrain. Cette collection, forte de plusieurs dizaines de milliers d'échantillons, a intégrée récemment le CRB Colisa. Dans ce cadre là, et pour obtenir une labellisation, les gestionnaires ont dû renommer l'intégralité des échantillons pour harmoniser la collection et favoriser sa gestion. En 2002, via le système qualité, une codification pour chaque expérimentation a été mise en place au sein de l'UMR INRA-UPPA ECOBIOP. Cette démarche a non seulement permise de relier précisément chaque échantillon à son projet d'origine mais aussi d'attribuer un numéro unique à chaque échantillon prélevé selon le modèle suivant : STPE-XXYY-XXZZZ STPE : SainT-Pée-sur-nivelleEcobiop XX : année en cours YY : numéro de l'expérimentation de l'année XX ZZZ : numéro chronologique de l'échantillon Depuis, cette numérotation particulière a été étendue à toutes les années et tous les échantillons de la collection. Le présent dataset a pour but de décliner les codes de tous les projets ou expérimentations entrepris sur la Nivelle depuis la fin des années 70.
DOI: 10.57745/llsvuh
title: Downscaled climate projections (1971-2100) for the Vantaanjoki-Lepsämänjoki river basin (Finland)

description: Downscaled projections of temperature, precipitation, and reference evapotranspiration for the Vantaanjoki river basin (which includes the Lepsämänjoki DRN). 3 SSP scenarios and 5 climate models.
DOI: 10.57745/lujzeh
title: Replication data for assessing the reliability of plasticine models of caterpillars reliably measure bird predation

description: We compared bird predation on plasticine caterpillar models to that on dead caterpillars of similar size and color, using camera traps to assess actual predation events and to evaluate observer accuracy in identifying predation marks a posteriori.
DOI: 10.57745/lvrfwj
title: Alignment of French Crop Usage Thesaurus and French National Taxonomic Repository TAXREF-LD

description: This dataset contains mappings of two complementary knowledge graphs useful in agriculture: the thesaurus of cultivated plants in France named French Crop Usage (FCU) and the French national taxonomic repository TAXREF for fauna, flora and fungi. FCU describes the usages of plants in agriculture: 'tomatoes' are crops used for human food, 'grapevines' are crops used for human food or beverage. TAXREF describes biological taxa and associated scientific names: for example, a tomato specie may be 'Solanum lycopersicum' or a grapevine specie may be 'Vitis vinifera'. Both knowledge graphs contain vernacular names of plants but those names are ambiguous. Thus a group of agricultural experts produced some mappings from FCU crops to TAXREF taxa. New mapping properties were defined to link crop usages with taxa. This vocabulary is available in the AgroPortal repository [https://agroportal.lirmm.fr/ontologies/CROPUSAGE/?p=properties]. The file follows the SSSOM format version 1.0 [https://github.com/mapping-commons/sssom]
DOI: 10.57745/mbqe4i
title: RT-qPCR Data (raw, merged, normalized and analyzed) associated to the evaluation of the preventive treatments for intestinal mucositis in a murine model using Lacticaseibacillus rhamnosus L156.4 and Lacticaseibacillus rhamnosus GG

description: All RT-qPCR data were generated from a murine model of 5-fluorouracil (5-FU)-induced intestinal mucositis. BALB/c mice were treated daily for 13 days with 200 µL of either live, heat-inactivated, or culture supernatant preparations of Lacticaseibacillus rhamnosus L156.4 or LGG (ATCC 53103), or PBS as control. Mucositis was induced on day 11 via intraperitoneal injection of 5-FU (300 mg/kg). Animals were euthanized 72 hours post-induction. RNA was extracted from the distal ileum, reverse-transcribed to cDNA, and used in SYBR Green-based qPCR assays targeting markers of intestinal barrier function (e.g., Ocln, Cldn2, Tjp1), mucin production (Muc2), inflammation (Tnf, Il1b, Il6, Nfkb1), and immunoregulation (Il10, Tgfb1), normalized to Actb. Dataset includes raw Ct values and normalized expression values (ΔΔCt).
DOI: 10.57745/mvva0i
title: RPG complété 2020 Région Bourgogne

description: RPG complété 2020. Complète le RPG campagne 2020 pour les départements de la région Bourgogne (21, 58, 71, 89). (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2022.
DOI: 10.57745/mxrngp
title: Data about Prediction of the digestible energy content of hay for horses from their chemical composition using the National Institute of Agricultural Research system: new models

description: Data concerning the article "Prediction of the digestible energy content of hay for horses from their chemical composition using the National Institute of Agricultural Research system: new models"
DOI: 10.57745/n57lao
title: Une Ville face au climat : Metz à la fin du Moyen Âge (1400-1530). Annexes et fichiers sources

description: Annexes et intégralité des fichiers sources de l'ouvrage de Laurent Litzenburger : Une Ville face au climat : Metz à la fin du Moyen Âge (1400-1530), PUN-Éditions Universitaires de Lorraine, Collection « Archéologie, Espaces, Patrimoines », 2015. Les fichiers sources regroupent l'intégralité des feuilles de calcul (aux formats .xlsx et .pdf) utilisées pour faire les graphiques, des figures (formats .docx et .pdf) et des cartes et plans (formats .svg et .png).
DOI: 10.57745/ny9ol5
title: A catalog of genes and species of the human skin microbiota

description: Dataset overview This dataset provides: a non-redundant high-quality catalog of 2.9 million genes 392 Metagenomic Species Pangenomes (MSPs) This dataset can be used to analyze shotgun sequencing data of the human skin microbiota. How to use this dataset Create a gene abundance table by aligning reads from each sample against the catalog. For this purpose, you can use Meteor or NGLess. Then, normalize raw counts by gene length. Taxonomic profiling: the abundance of each species can be estimated as the average abundance of its 100 first core genes. To reduce the false positive rate, only consider that a species is present if at least 10/100 marker genes are detected. Methods Data sources This dataset was built using the following data sources: 118 isolate-derived genomes from the HMRGD 246 isolate-derived genomes from the Skin Microbial Genome Collection (SMGC) 1,407 skin metagenome assemblies from the Skin Microbial Genome Collection (SMGC) Non-redundant gene catalog After filtering out short contigs (&lt;1500 bp), genes were predicted with Prodigal on genomes (mode: single) and metagenome assemblies (mode: meta). Complete genes (partial=00) were pooled and clustered with cd-hit-est (parameters -c 0.95 -aS 0.90 -G 0 -d 0 -M 0 -T 0) by choosing those from the longest contigs as representatives. Functional annotation KOs assignments were obtained with KofamScan using the KEGG 107 database. MSPs recovery Reads from the 1,120 skin metagenomes available in the bioproject PRJNA46333 were aligned against the non-redundant gene catalog with the Meteor software suite to produce a raw gene abundance table (2.9M genes quantified in 1,120samples). Then, co-abundant genes were binned in 392 Metagenomic Species Pan-genomes (MSPs, i.e. clusters of co-abundant genes that likely belong to the same microbial species) using MSPminer. MSPs taxonomic annotation Taxonomic annotation was performed by alignment of all core and accessory genes against representative genomes of the GTDB database (release r214) using blastn (version 2.7.1, task = megablast, word_size = 16). A species-level assignment was given if &gt; 50% of the genes matched the representative genome of a given species, with a mean nucleotide identity ≥ 95% and mean gene length coverage ≥ 90%. The remaining MSPs were assigned to a higher taxonomic level (genus to superkingdom), if more than 50% of their genes had the same annotation. Construction of the phylogenetic tree 39 universal phylogenetic markers genes were extracted from the MSPs (or the corresponding genome if available) with fetchMGs. Then, the markers were separately aligned with MUSCLE. The 40 alignments were merged and trimmed with trimAl (parameters: -automated1). Finally, the phylogenetic tree was computed with FastTreeMP (parameters: -gamma -pseudo -spr -mlacc 3 -slownni).
DOI: 10.57745/orlr4o
title: Points de simulation des modèles AquiFR, EROS, et MONA

description: Support SIG (.shp) des points de simulation des modèles AquiFR, EROS, et MONA associés à des piézomètres
DOI: 10.57745/os1jnd
title: Data, Results and tools code for Seed2LP paper reproducibility

description: These data repository is a tar.gz containing: Data: sbml files retrieved from BiGG database, some specific data such as objectives reaction or targeted metabolites from objective reaction, sbml normalised file after Seed2LP normalisation Results: all results obtains from the benchmark to get the data visualisation and analyses used on the Paper Seed2LP. Additional results have been produced in v2 of datasets. Tools: 3 tools needed to compute the results Precursor (https://github.com/bioasp/precursor, licence GNU GPL V3) N2PComp (which integrate NetSeedPerl and run both Precursor and Netseed. Netseed has the licence licence GNU GPL V3 and originates from publication 10.1093/bioinformatics/btr721 Seed2LP This repo does not contain the notebooks to execute the run in order to get the results, or to visualise data. These notebooks are available on github : https://github.com/bioasp/seed2lp
DOI: 10.57745/ouitli
title: Analyse_6_PM_DH_filter

description: PM_DH_filter
DOI: 10.57745/owexy1
title: Data to estimate urban seismic damages and debris from building-level simulations

description: This dataset contains informations about buildings in Beirut in shapefile format used for estimation of seismic damage and debris at the urban scale. The buildings are in polygon format and the data includes attributes related to their height obtained from the treatment of satellite images. The format is compatible with most GIS software.
DOI: 10.57745/oyzyxu
title: Questions Parlementaires Travail Détaché

description: La base de données rassemble les questions posées à l’Assemblée nationale sur le travail détaché au cours de la 14e législature (jusqu’en juin 2017). Les données ont été aspirées de manière automatique depuis le site de l’Assemblée, puis vérifiées et triées « à la main ». La base rassemble 481 questions parlementaires. The database gathers the questions asked in the French National Assembly on posting of workers during the 14th legislature (June 2012-June 2017). The data was automatically retrieved from the Assembly's website and then checked and sorted by hand. The database contains 481 parliamentary questions.
DOI: 10.57745/irip73
title: Comparison of species and provenances of fir, pine and cedar in the RDI-ONF network (Couchey- AR AR 1993_17_01)

description: RDI-ONF : Le réseau Recherche Développement et Innovation (RDI) de l’ONF a installé depuis sa création en 1986 quelques 700 dispositifs expérimentaux en forêts publiques, menés à leur terme expérimental ou encore suivis, dont 20% sont déjà intégrés dans des réseaux partenariaux de l'infrastructure de recherche IN-SYLVA France (par exemple dans le GIS Coop ou le GIS Groupe Pin Maritime du Futur). Les 80 % autres correspondent essentiellement à des expérimentations simples (1 à 2 facteurs testés, quelques répétitions) installées en plantation ou dans des peuplements régénérés naturellement, pour 80 % sur des sujets techniques variés liés aux Techniques Forestières (techniques de renouvellement et de conduite des peuplements, gestion des sols …) et 20 % sur les Ressources Génétiques Forestières (choix des essences/provenances, vergers à graines). Ces essais concernent majoritairement les grandes essences forestières de production des forêts publiques, représentées par les genres Quercus, Fagus, Pinus, Abies et Picea. Les dispositifs les plus anciens ont souvent été installés pour répondre à des questions locales, avec une évolution au profit d’expérimentations en réseaux multi-sites sur des enjeux de gestion à échelle nationale, tels que le réseau sylviculture juvénile du hêtre (13 sites), le réseau d’évaluation de sylvicultures économes en eau (4 sites), le réseau migration assistée « Giono » (3 sites), des réseaux de comparaisons de provenance de cèdre (6 sites en contexte septentrional) ou de mélèze (5 sites). Le site de Couchey fait partie des 108 essais en cours sur les Ressources Génétiques Forestières RDI-ONF Network Since its creation in 1986, the ONF's Research, Development and Innovation (RDI) network has installed some 700 experimental sites that are either completed or still being monitored in public forests. 20% of which are already integrated into the IN-SYLVA France partnership networks (e.g., GIS Coop or GIS Groupe Pin Maritime du Futur), while the other 80% are simple experiments (1 to 2 factors tested, a few repetitions) in plantations or in naturally regenerated stands on various technical subjects related to forest management (choice of species or origins, renewal and stand management techniques, soil management, etc.). These experiments concern mainly species with a high market value in public forests (i.e. which belong to the genus Quercus, Fagus, Pinus, Abies and Picea). Experiments used to answer local questions but then shifted towards multi-site and multi-partenarial networks regarding management issues on a national scale, such as the juvenile stand management of beech sub-network (13 sites), the water-saving silviculture evaluation network (4 sites), the "Giono" assisted migration network (3 sites), cedar provenance comparison networks (6 sites in a northern context) or larch (5 sites). The Couchey site is part of the 108 ongoing trials on Forest Genetic Resources
DOI: 10.57745/l8jrdh
title: Effects of boreal ground layer shrubs and bryophytes on the diversity, biomass and composition of lichen communities across contrasting ecosystems

description: Lichen Data for publication