cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.hzyckb
title: Occurrence Download

description: A dataset containing 10393 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Spain",
 "Geometry POLYGON((-5.297 36.30233,-5.46374 36.61663,-5.99521 36.62499,-6.2349 36.48268,-6.17758 36.32332,-6.03169 36.20148,-5.91184 36.18466,-5.76074 36.08366,-5.59921 36.0584,-5.48979 36.10051,-5.36474 36.16784,-5.297 36.30233))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 10393 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061722-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.typmfy
title: Occurrence Download

description: A dataset containing 4139 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Virginia valeriae Baird & Girard, 1853"
 ]
}

 The dataset includes 4139 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061724-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e211921
title: Land Dedications as Local Government Requirement for Open Space: Results from US Surveys of Cities

description: The data described here were used in the analysis and findings reported in the article, Agustin Leon-Moreta, "Land dedications as local government requirement for open space: Results from US surveys of cities," Cities, Volume 157, 2025,105625, https://doi.org/10.1016/j.cities.2024.105625. A STATA (V.13) do-file for calculating variables is also included. Please cite the corresponding article if this dataset is used to support additional findings.<br><br>
description: Municipalities in metropolitan areas in the United States.<br>.
DOI: 10.3886/e211921v1
title: Land Dedications as Local Government Requirement for Open Space: Results from US Surveys of Cities

description: The data described here were used in the analysis and findings reported in the article, Agustin Leon-Moreta, "Land dedications as local government requirement for open space: Results from US surveys of cities," Cities, Volume 157, 2025,105625, https://doi.org/10.1016/j.cities.2024.105625. A STATA (V.13) do-file for calculating variables is also included. Please cite the corresponding article if this dataset is used to support additional findings.<br><br>
description: Municipalities in metropolitan areas in the United States.<br>.
DOI: 10.34740/kaggle/dsv/10407294
title: Video Game Sales Analyze
DOI: 10.15468/dl.bjt2u3
title: Occurrence Download

description: A dataset containing 7078 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cornus kousa Bürger ex Hance",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7078 records from 169 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061727-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5kk94q61
title: MassIVE MSV000096807 - Local growth hormone facilitates the aging colon epithelial microenvironment
title: Aging is associated with appearance of senescent cells secreting the senescence-associated secretome facilitating a milieu favoring age-related changes in microenvironment. Previously, we showed accumulation and secretion of local non-pituitary growth hormone (npGH) in senescent colon epithelial cells. Here, we elucidate mechanisms underlying npGH action in the non-tumorous colon tissue microenvironment. We demonstrate autocrine npGH action in normal human colon cells (hNCC) infected with lentivirus expressing hGH (lentiGH), as well as paracrine npGH action in hNCC cocultured with lentiGH hNCC and in intact human 3-dimensional intestinal organoids co-cultured with organoids infected with lentiGH. Enriched gene ontology and pathway analysis of intact organoids exposed to paracrine npGH identified distorted extracellular matrix (ECM) and focal adhesion pathways concurrent with altered expression of ECM and cytoskeletal proteins. Significant phosphoprotein changes associated with cytoskeleton and cell migration pathway occurred in GH-exposed hNCC. Paracrine npGH triggers these changes by activating epithelial-mesenchymal transition, as shown by suppression of E-cadherin and induction of Twist2 in cellular models, as well as in the colon of nude mice harboring GH-secreting xenografts. These changes are consistent with observed increased migration of hNCC overexpressing lentiGH, or in those co-cultured with GH-secreting hNCC or with GH-secreting normal colon fibroblasts. Furthermore, whole exome sequencing detected increased cell copy number alterations in intact organoids co-cultured with lentiGH-infected organoids, likely as a consequence of GH-mediated suppressed DNA damage repair thereby favoring cell transformation. Our results indicate that accumulated npGH in aging tissue enables a microenvironment landscape favoring age-associated pro-proliferative changes.
DOI: 10.15468/dl.8y5atp
title: Occurrence Download

description: A dataset containing 22132 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-10000.0",
 "Geometry POLYGON((-79.53933 42.91419,-87.11347 39.90862,-89.59922 30.08001,-88.36579 30.09436,-80.7772 29.91979,-80.57703 30.71152,-72.75892 38.87379,-68.0806 43.80594,-64.05759 43.20821,-58.87274 45.52496,-60.19367 47.77352,-62.05362 46.74408,-63.96649 47.27457,-63.74099 48.48985,-65.42076 50.13128,-70.01146 48.39332,-78.3245 43.96869,-79.53933 42.91419))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Coordinate rounded, Geodetic datum assumed WGS84, Continent derived from coordinates, The taxon ID was not used in backbone matching, Multimedia date invalid, Multimedia URI invalid, Occurrence status inferred from individual count, Institution match fuzzy, Collection match fuzzy, Institution collection mismatch)",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Vulpes vulpes (Linnaeus, 1758), Canis latrans Say, 1823, Urocyon cinereoargenteus (Schreber, 1775))",
 "Year 2000-2025"
 ]
}

 The dataset includes 22132 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061728-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28169318.v1
title: Singh_FrontVirol_GS-CA1_MSdata.XLSX

description: Protein-level mass spec data for the GS-CA1 experiment
DOI: 10.6084/m9.figshare.28169318
title: Singh_FrontVirol_GS-CA1_MSdata.XLSX

description: Protein-level mass spec data for the GS-CA1 experiment
DOI: 10.15468/dl.4wnbmq
title: Occurrence Download

description: A dataset containing 76388 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gomphocerippus rufus (Linnaeus, 1758)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 76388 records from 928 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061729-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9hhfan
title: Occurrence Download

description: A dataset containing 932 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xylella fastidiosa Wells et al., 1987"
 ]
}

 The dataset includes 932 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020557-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/8738477
title: Elzihimer diseases
DOI: 10.15468/dl.dve75s
title: Occurrence Download

description: A dataset containing 932 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Xylella fastidiosa subsp. multiplex Schaad et al., 2009, Xylella fastidiosa subsp. pauca Schaad et al., 2004, Xylella fastidiosa Wells et al., 1987, Xylella fastidiosa subsp. fastidiosa)"
 ]
}

 The dataset includes 932 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020558-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12723193
title: Methanol (CH3OH), acetylene (C2H2), and propylene (C3H6) point-sources detected by the IASI infrared satellite instrument (2007-2023).

description: This dataset includes the super-sampled IASI 0.01° × 0.01° CH3OH, C2H2, C3H6, and SO2 HRI dataset in GeoTIFF format and the catalogue of identified and categorized point-sources of CH3OH, C2H2, and C3H6 in kml format. The oversampling, wind rotation and supersampling prorcedure and codes are available in the paper of Clarisse et al. (2019) at https://doi.org/10.5194/amt-12-5457-2019.
DOI: 10.26249/fk2/48ftww
title: Cooperativity of cysteines governs GSDMD palmitoylation-mediated membrane targeting and assembly

description: Gasdermin D (GSDMD) executes cell death program pyroptosis by assembling into oligomers that permeabilize the plasma membrane. Here, by single-molecule imaging, we elucidate the yet elusive mechanism of GSDMD pore assembly and the role of cysteines in GSDMD oligomerization. We show that GSDMD preassembles at the membrane into dimeric and trimeric building blocks that can either insert the membrane or further assemble into higher-order oligomers, prior to membrane insertion. Cys39, Cys57, and Cys192 are the only relevant cysteines in GSDMD oligomerization. S-palmitoylation of Cys192 controls GSDMD membrane targeting together with negatively charged lipids. Importantly, simultaneous Cys39/57/192-to-Ala mutations, but not Cys192 or the Cys39/57 pair individually, completely abolish GSDMD insertion into artificial membranes and the plasma membrane in cells. Finally, either Cys192 or the Cys39/Cys57 pair are sufficient to form dimers/trimers, but they are all required for functional higher-order oligomer formation. Overall, our study unveils a cooperative role of Cys192 palmitoylation-mediated membrane binding and Cys39/57/192-mediated oligomerization in GSDMD pore assembly. This study supports a model where GSDMD oligomerization relies on a two-step mechanism mediated by cysteines. Raw and Source data can be accessed via the link.
DOI: 10.15468/dl.pc47b5
title: Occurrence Download

description: A dataset containing 491 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-49.41196 29.23422,-11.46234 29.23422,-11.46234 56.78469,-49.41196 56.78469,-49.41196 29.23422))",
 "HasGeospatialIssue is false",
 "TaxonKey is Thunnus thynnus (Linnaeus, 1758)"
 ]
}

 The dataset includes 491 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020559-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10816647
title: A Corpus of Biblical Names in the Greek New Testament to Study the Additions, Omissions, and Variations across Different Manuscripts

description: The analysis of textual variants of verses in the Ancient Greek New Testament across different manuscripts has mainly been done by close reading with manual effort. With the increasing number of transcriptions of the different manuscripts, quantitative analyses (so-called distant reading) can be used to search for patterns of omission, addition, or other variations, to formulate novel hypotheses to be investigated by close reading. In this work, we present a corpus of biblical names including spelling variation and inflections and their mentions in the transcriptions of the Ancient Greek New Testament.
DOI: 10.5281/zenodo.10985520
title: A Corpus of Biblical Names in the Greek New Testament to Study the Additions, Omissions, and Variations across Different Manuscripts

description: The analysis of textual variants of verses in the Ancient Greek New Testament across different manuscripts has mainly been done by close reading with manual effort. With the increasing number of transcriptions of the different manuscripts, quantitative analyses (so-called distant reading) can be used to search for patterns of omission, addition, or other variations, to formulate novel hypotheses to be investigated by close reading. In this work, we present a corpus of biblical names including spelling variation and inflections and their mentions in the transcriptions of the Ancient Greek New Testament.
DOI: 10.5281/zenodo.12723324
title: A Corpus of Biblical Names in the Greek New Testament to Study the Additions, Omissions, and Variations across Different Manuscripts

description: The analysis of textual variants of verses in the Ancient Greek New Testament across different manuscripts has mainly been done by close reading with manual effort. With the increasing number of transcriptions of the different manuscripts, quantitative analyses (so-called distant reading) can be used to search for patterns of omission, addition, or other variations, to formulate novel hypotheses to be investigated by close reading. In this work, we present a corpus of biblical names including spelling variation and inflections and their mentions in the transcriptions of the Ancient Greek New Testament.
DOI: 10.15468/dl.h4erqf
title: Occurrence Download

description: A dataset containing 954 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Espadarana prosoblepon (Boettger, 1892)"
 ]
}

 The dataset includes 954 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020560-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26248628
title: SMC-OFF_1kb

description: MicroC-XL public tracks
DOI: 10.6084/m9.figshare.26248628.v1
title: SMC-OFF_1kb

description: MicroC-XL public tracks
DOI: 10.15468/dl.jj9xmb
title: Occurrence Download

description: A dataset containing 389 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "GbifRegion is Latin America and the Caribbean",
 "Geometry POLYGON((-56.70635 -16.31755,-56.02117 -16.31168,-55.34089 -16.30586,-55.76413 -15.66313,-56.31419 -15.66605,-56.70635 -16.31755))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Insecta"
 ]
}

 The dataset includes 389 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020563-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26248910
title: Supplementary Material for: Cytokines in cerebrospinal fluid and chronic pain in humans – past, present, and future

description: Background
That neuroimmune interaction occurs in chronic pain conditions has been established for over a centrury, since the discovery of neurogenic inflammation in the periphery. However, the central aspects of neuroimmune interaction have not been fully appreciated until the late 1900s, when a growing interest in how cytokines in the cerebrospinal fluid might be relevant in chronic pain conditions emerged. Since then, the field has evolved, and nowadays neuroinflammation is considered to be involved in the pathophysiology of chronic pain. Whether or not pain conditions can be called “neuroinflammatory” is a matter of debate. This review summarizes the results from studies investigating cytokines in the CSF in various pain conditions, and critically discusses neuroimmune aspects of pain conditions using previously proposed hallmarks of neuroinflammation as a framework.

Summary
Fifty-two papers were summarized and their results discretized according to a) the level of the measured cytokines in patients compared to controls, and b) the correlation between cytokine level and pain intensity. A subdivision based on pain type was also conducted for each of the 52 studies. A total of 49 proteins have been studied in at least 5 studies, 21 of which were upregulated in a majority of studies. IL8 was specifically upregulated in a majority of studies of nociceptive pain conditions. Regarding correlation to pain intensity, there is a scarcity of data but 31 proteins were upregulated and correlated with pain in at least one study. Of these, 24 proteins were negatively correlated with pain, and 7 were positively correlated. None of the most studied cytokines, such as TNF, IL1b, IL6, IL8, CCL2/MCP1, BDNF or bNGF, were consistently correlated to pain.

Key messages
There is sufficient evidence to say that chronic pain conditions come with an upregulation of several cytokines. However, the majority of correlations to symptomatology seem to be negative, indicating that the cytokines might play a protective role that has not been broadly considered. Calling chronic pain conditions neuroinflammatory seems wrong; instead, a more suitable term for depicting the findings would, perhaps, be to talk about neuroimmune activation.
DOI: 10.6084/m9.figshare.26248910.v1
title: Supplementary Material for: Cytokines in cerebrospinal fluid and chronic pain in humans – past, present, and future

description: Background
That neuroimmune interaction occurs in chronic pain conditions has been established for over a centrury, since the discovery of neurogenic inflammation in the periphery. However, the central aspects of neuroimmune interaction have not been fully appreciated until the late 1900s, when a growing interest in how cytokines in the cerebrospinal fluid might be relevant in chronic pain conditions emerged. Since then, the field has evolved, and nowadays neuroinflammation is considered to be involved in the pathophysiology of chronic pain. Whether or not pain conditions can be called “neuroinflammatory” is a matter of debate. This review summarizes the results from studies investigating cytokines in the CSF in various pain conditions, and critically discusses neuroimmune aspects of pain conditions using previously proposed hallmarks of neuroinflammation as a framework.

Summary
Fifty-two papers were summarized and their results discretized according to a) the level of the measured cytokines in patients compared to controls, and b) the correlation between cytokine level and pain intensity. A subdivision based on pain type was also conducted for each of the 52 studies. A total of 49 proteins have been studied in at least 5 studies, 21 of which were upregulated in a majority of studies. IL8 was specifically upregulated in a majority of studies of nociceptive pain conditions. Regarding correlation to pain intensity, there is a scarcity of data but 31 proteins were upregulated and correlated with pain in at least one study. Of these, 24 proteins were negatively correlated with pain, and 7 were positively correlated. None of the most studied cytokines, such as TNF, IL1b, IL6, IL8, CCL2/MCP1, BDNF or bNGF, were consistently correlated to pain.

Key messages
There is sufficient evidence to say that chronic pain conditions come with an upregulation of several cytokines. However, the majority of correlations to symptomatology seem to be negative, indicating that the cytokines might play a protective role that has not been broadly considered. Calling chronic pain conditions neuroinflammatory seems wrong; instead, a more suitable term for depicting the findings would, perhaps, be to talk about neuroimmune activation.
DOI: 10.6084/m9.figshare.26248928
title: MicroC-XL_boundaries

description: MicroC-XL dataset
DOI: 10.6084/m9.figshare.26248928.v1
title: MicroC-XL_boundaries

description: MicroC-XL dataset
DOI: 10.15468/dl.54htmr
title: Occurrence Download

description: A dataset containing 7547518 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fagaceae"
 ]
}

 The dataset includes 7547518 records from 5577 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020561-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.26atld
title: Occurrence Download

description: A dataset containing 180 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Triatoma protracta (Uhler, 1894)"
 ]
}

 The dataset includes 180 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044665-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8y5b7w
title: Occurrence Download

description: A dataset containing 1054 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Sinosuthora alphonsiana (J.Verreaux, 1870)"
 ]
}

 The dataset includes 1054 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012118-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kfntgp
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Caladium andreanum Bogner"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0149096-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xn3vmk
title: Occurrence Download

description: A dataset containing 856 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Ecuador",
 "TaxonKey is Colibri von Spix, 1824"
 ]
}

 The dataset includes 856 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0194867-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3s5jxe
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Psilotum nudum (L.) P.Beauv."
 ]
}

 The dataset includes 65 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044665-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.669q9c
title: Occurrence Download

description: A dataset containing 2534 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polypogon fugax Nees ex Steud.",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2534 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012154-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.