cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/pfntdc9ndy.3
title: Investigation of laser-induced cavity and plasma formation in water using double-pulse LIBS

description: Investigation of cavity and plasma formation on samples under water using a double pulse laser SpitLight Compact 400 PIV of the company Innolas Laser GmbH. High-speed images were taken by a high-speed camera IDT MotionPro Y7-S3. Spectra were measured with a spectrometer AvaSpec-ULS750F-USB2. Both laser pulses, high-speed camera and spectrometer were triggered by a delay generator Quantum Composers 9400 Series (MODEL 9428). The latest version contains the pulse energies calibrated to single pulse mode of the laser system.
DOI: 10.17632/zdr8kzc2rp
title: LDHU3_19.1830

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/zdr8kzc2rp.1
title: LDHU3_19.1830

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/3wnhfzb5g5.2
title: Rare earth element and yttrium (REY) geochemistry of 3.46-2.45 Ga greenalite-bearing banded iron formations: New insights into iron deposition and ancient ocean chemistry

description: Finely laminated chert enclosing nanoparticles of greenalite and apatite is ubiquitous in Archean-Paleoproterozoic ferruginous cherts, jaspilites and Banded Iron Formations (BIFs) and are considered to be primary deposits. The cherts and BIFs are chemical sedimentary rocks interpreted to have been precipitated in marine settings prior to the first permanent rise in atmospheric oxygen at the Great Oxidation Event (GOE) ca. 2.45-2.32 M.y. ago. As chemical sediments, they are potential archives of the solutions from which they precipitated, incorporating signals from hydrothermal fluids and ambient seawater. Previous studies of rare earth elements and Y (REY) in pre-GOE BIFs have mostly found an “Archean seawater signature” with positive Eu anomalies, attributed to the influence of high-temperature hydrothermal processes, and positive anomalies for La, Gd and Y, ascribed to seawater. REY abundances determined by in situ LA-ICP-MS are presented for well-preserved, laminated greenalite-bearing cherts from ten formations of pre-GOE ferruginous cherts and BIFs from Western Australia. The samples come from a wide range of depositional environments, e.g., submarine proximal volcanic environments, basin floor, slope and deep marine shelf, and are between 3.46 Ga to 2.45 Ga in age. Five groups with different REY profiles are identified, namely (i) mafic-volcanic-influenced vent-proximal chert; (ii) felsic volcanic- and sediment-associated chert, (iii) ferruginous cherts in shelf sediments, (iv) the Nammuldi Member of the Marra Mamba Iron Formation and Joffre Member of the Brockman Iron Formation, and (v) the Dales Gorge Member of the Brockman Iron Formation. Of these, only the Dales Gorge Member BIF has a typical Archean seawater signature while the others have REY patterns likely reflecting differing source fluids and environments of deposition but not necessarily global ocean chemistry. Analyses of chert containing sub-micron-sized particles of greenalite and apatite indicate that the likely hosts of the REEs are apatite, siderite and possibly greenalite. The REY profiles of the greenalite-bearing cherts may differ from those of bulk samples of the same formations, perhaps reflecting a diagenetic overprint in the bulk samples, whereas the greenalite-bearing cherts likely preserve their depositional compositions, locked in by early silicification. Data stored here include: 
Table S1: Individual point analyses (ppm) of Rare Earth Elements + Y in greenalite‐bearing chert samples from Western Australia. 
Table S2: Individual point analyses (ppm) of selected elements in greenalite‐bearing chert samples from Western Australia.
DOI: 10.17028/rd.lboro.28239722
title: Supplementary information files for "Characterization of a novel amidohydrolase with promiscuous esterase activity from a soil metagenomic library and its application in degradation of amide herbicides"

description: Supplementary information files for article "Characterization of a novel amidohydrolase with promiscuous esterase activity from a soil metagenomic library and its application in degradation of amide herbicides"Amide herbicides have been extensively used worldwide and have received substantial attention due to their adverse environmental effects. Here, a novel amidohydrolase gene was identified from a soil metagenomic library using diethyl terephthalate (DET) as a screening substrate. The recombinant enzyme, AmiH52, was heterologously expressed in Escherichia coli and later purified and characterised, with the highest activity occurring at 40 ℃ and pH 8.0. AmiH52 was demonstrated to have both esterase and amidohydrolase activities, which exhibited highly specific activity for p-nitrophenyl butyrate (2669 U/mg) and degrading activity against several amide herbicides. In particular, it displayed the strongest activity against propanil, with a high degradation rate of 84% at 8 h. A GC-MS analysis revealed that propanil was transformed into 3,4- dichloroaniline (3,4-DCA) during this degradation. The molecular interactions and binding stability were then analysed by molecular docking and molecular dynamics simulation, which revealed that several key amino acid residues, including Tyr164, Trp66, Ala59, Val283, Arg58, His33, His191, and His226, are involved in the specific interactions with propanil. This study provides a function-driven screening method for amide herbicide hydrolase from the metagenomic libraries and a promising propanil degrading enzyme (AmiH52) for potential applications in environmental remediation.© The Authors, CC BY 4.0
DOI: 10.17028/rd.lboro.28239722.v1
title: Supplementary information files for "Characterization of a novel amidohydrolase with promiscuous esterase activity from a soil metagenomic library and its application in degradation of amide herbicides"

description: Supplementary information files for article "Characterization of a novel amidohydrolase with promiscuous esterase activity from a soil metagenomic library and its application in degradation of amide herbicides"Amide herbicides have been extensively used worldwide and have received substantial attention due to their adverse environmental effects. Here, a novel amidohydrolase gene was identified from a soil metagenomic library using diethyl terephthalate (DET) as a screening substrate. The recombinant enzyme, AmiH52, was heterologously expressed in Escherichia coli and later purified and characterised, with the highest activity occurring at 40 ℃ and pH 8.0. AmiH52 was demonstrated to have both esterase and amidohydrolase activities, which exhibited highly specific activity for p-nitrophenyl butyrate (2669 U/mg) and degrading activity against several amide herbicides. In particular, it displayed the strongest activity against propanil, with a high degradation rate of 84% at 8 h. A GC-MS analysis revealed that propanil was transformed into 3,4- dichloroaniline (3,4-DCA) during this degradation. The molecular interactions and binding stability were then analysed by molecular docking and molecular dynamics simulation, which revealed that several key amino acid residues, including Tyr164, Trp66, Ala59, Val283, Arg58, His33, His191, and His226, are involved in the specific interactions with propanil. This study provides a function-driven screening method for amide herbicide hydrolase from the metagenomic libraries and a promising propanil degrading enzyme (AmiH52) for potential applications in environmental remediation.© The Authors, CC BY 4.0
DOI: 10.17632/rstxspmrhd
title: LDHU3_19.1820

description: Hypothetical protein; Leishmania donovani (HU3 strain)
DOI: 10.17632/rstxspmrhd.1
title: LDHU3_19.1820

description: Hypothetical protein; Leishmania donovani (HU3 strain)
DOI: 10.17632/xf6978yt45
title: LDHU3_19.1800

description: Mitogen-activated protein kinase 4 | MPK4; Leishmania donovani (HU3 strain)
DOI: 10.17632/xf6978yt45.1
title: LDHU3_19.1800

description: Mitogen-activated protein kinase 4 | MPK4; Leishmania donovani (HU3 strain)
DOI: 10.17632/fwczkb6xw3.2
title: Single Cell RNAseq BAM files and metadata "Tailoring vascular phenotype through AAV T therapy promotes anti-tumor immunity in glioma, Ramachandran et al, 2023"

description: This study was designed to capture the changes in CD8 T cell phenotypes in murine glioma (CT-2A) model post immunotherapy with AAV-LIGHT (TNFSF14). Tumour infiltrating CD45 cells were isolated by flow sorting and subject to targeted single-cell transcriptome sequencing and downstream analysis.
1. The 3 .bam files contain aligned sequence data for sc-RNAseq of all the CD8+T cells in the 3 libraries that were analysed in the mentioned study.
2. md5 checksum file to verify integrity of the data
3. Metadata including cell id to annotate the cells to treatment and outcome
4. Normalized counts
4. Normalized gene expression data of CD8 T cells.
DOI: 10.17632/tx4v8y9bmj.4
title: Data for Reaction pathway, mechanism and kinetics of thermochemical sulfate reduction: insights from in situ Raman spectroscopic observations at elevated temperatures and pressures

description: Raman spectra of all reaction systems and calculated peak area ratio between the TSR-involved species and N2. The simulation result of tonnages of Zn precipitated from ore-forming fluid is also contained in the files.
DOI: 10.17632/g58vhcykcj.2
title: Sediment load under diverse climate change scenarios

description: Climate change directly affects the intensity of surface erosion and the sediment load in rivers. Currently, there are many climate models in use in Europe, and their forecasts differ to some extent. This means that the selection of models and their ensembles in environmental analyzes will directly translate into the predicted sediment load, which is important for mitigating the siltation of rivers and dammed reservoirs.
Using the SWAT model [1,2,3], we performed research on the impact of adopting various climate models [4] on the sediment load flowing into the dammed reservoir. We included three types of comparison:
A. We adopted point forecasts for the nearest large city – Kraków [5] and areal forecasts for the catchment.
B. We compared the adopted reference period, which is a source of precipitation change for the climate scenarios.
C. We have put together various types of ensembles - consisting of wet and dry models [6].
We present the research results in individual sheets of the included Excel file. The file contains four sheets:
1.Location:
We present a graphic of the location of the calculation point for which the research was carried out. It contains a map of Poland and the Carpathian Mountains with the studied catchment marked (red). The next drawing highlights the analyzed catchment area of the upper Raba River flowing into the dammed reservoir (Dobczyce). The graphics also include data source setup for which point and areal approach scenarios were performed. The third figure on the graphic is the results of modeling average monthly sediment load for base scenario against the average precipitation monthly sums.
2. Climate change predictions:
First, the reader should pay attention to the graphics. They present all implemented scenarios (outer circle with corresponding colors) and the way they are named (inside the circle). It also includes which scenarios belong to the point (P) and areal (A) approaches, and what was the reference period (10 or 30 years). The table in this sheet presents the changes of precipitation introduced in the model using the delta change tool in the model SWAT.
3. Scenarios Database - Av.:
The spreadsheet presents the modeling results as average monthly sediment loads for each scenario. The data are presented in a table and a chart enabling quick comparison of annual cycle trends and their changes in various scenarios.
4. Scenarios Database - Y:
The last sheet presents the full monthly sediment load data sets for all scenarios. The reader's attention is focused on the interactive pivot chart. The user should select the scenarios of interest, years or months. It is then possible to thoroughly analyze changes in the modeling results of individual monthly values and time shifts resulting from the introduction of various types of ensemble climate models. In the background there are values that can be used by the reader for their own comparative analyses, provided that the source of the data is properly cited.
DOI: 10.5281/zenodo.14700784
title: salvia_officinalis_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.14700785
title: salvia_officinalis_zanfona_1.fasta.gz
DOI: 10.17632/2nnt4ws67x.2
title: Country based global distribution of phytomanaged polluted fields using aromatic plants dataset

description: World geographical distribution of phytomanaged polluted sites in the last 10 years. France is the leading country with the greatest number of publications (10), followed by India (8). Only 13 countries were involved in field phytomanagement studies. The total number of publications increased slightly until 2019. After 2019, a drastic increase was observed and the annual number of articles almost doubled compared with the previous year. Besides, to the best of our knowledge, only 32 out of 201 articles were field trials.
DOI: 10.17632/ynw9tfx3sh
title: Pseudomans OMV manuscript Raw data

description: Extracellular vesicles were harvested from Pseudomonas aeruginosa infected or mock infected human macrophages, lysed and equal amount for protein was subjected to LC-MS/MS analysis. The data was analyzed with proteomics data base to identify the bacterial peptides ( data set1). Next to dissect host derived exosomes and bacterial derived outer membrane vesicles we used CD9 beads and performed the LC-MS/MS analysis of purified exosomes and bacterial OMVs. the data was analyzed using proteomic tool. The raw data will be deposited.
DOI: 10.17632/ynw9tfx3sh.1
title: Pseudomans OMV manuscript Raw data

description: Extracellular vesicles were harvested from Pseudomonas aeruginosa infected or mock infected human macrophages, lysed and equal amount for protein was subjected to LC-MS/MS analysis. The data was analyzed with proteomics data base to identify the bacterial peptides ( data set1). Next to dissect host derived exosomes and bacterial derived outer membrane vesicles we used CD9 beads and performed the LC-MS/MS analysis of purified exosomes and bacterial OMVs. the data was analyzed using proteomic tool. The raw data will be deposited.
DOI: 10.17632/xw4shs8hyy.3
title: Driving data by an internet taxi (Snapp) using Saipa Tiba car

description: Driving data by an internet taxi (Snapp) using Saipa Tiba car including the data of 7242.1 km in Tehran, Iran, in 2023
DOI: 10.17632/csncnv8wnd.2
title: Driving data by an internet taxi (Snapp) using Irankhodro Runna car

description: Driving data by an internet taxi (Snapp) using Irankhodro Runna car including the data of 5739.1 km in Tehran, Iran, in 2023
DOI: 10.17632/6wpm8dshgn.1
title: The Mutare–Fingeren dyke swarm: the enigma of the Kalahari Craton’s exit from supercontinent Rodinia

description: Petrograpic, mineral chemistry, whole-rock geochemistry and U-Pb ID-TIMS baddeleyite geochronological data.
DOI: 10.17632/f9f899jk4c.1
title: Part 7 of data for Elizondo et al Adipose Tissue Macrophage Transglutaminase 2 and the Inflammation of Diet-Induced Obese Male Mice

description: Part 7 of data for Elizondo et al "Adipose Tissue Macrophage Transglutaminase 2 and the Inflammation of Diet-Induced Obese Male Mice". Contains RNAseq analysis files.
DOI: 10.17632/tx4bm4d8sr.1
title: Data for Potassium isotope composition in global loess: Origins and implications

description: The XRF results and all XRD and XANES numerical data collected as part of this study are available
DOI: 10.17632/pwpb3tgpfg.1
title: Decisional matrices with intuitionistic fuzzy numbers

description: Two decisional matrices with intuitionistic fuzzy numbers. It can be used to testing MCDA methods which needs IFS dataset. The LaTex and pdf formats are available.
DOI: 10.17632/7dwkn45mkr.1
title: A decision matrix containing the values of the alternatives for evaluation of Polish voivodeships regarding RES share in electric power capacity and electric energy production

description: A decision matrix containing the values of the alternatives for the criteria considered for 2019 for evaluation of Polish voivodeships regarding RES share in electric power capacity and electric energy production. The LaTex and pdf formats are available.
DOI: 10.17632/jfpkd8kgwp.1
title: NegativeRealRates

description: Dataset used in the working paper: What leads people to tolerate negative interest rates on their savings? Evidence from a Quasi-Experiment
DOI: 10.17632/jfpkd8kgwp.2
title: NegativeRealRates

description: Dataset used in the working paper: What leads people to tolerate negative interest rates on their savings? Evidence from a Quasi-Experiment
DOI: 10.17632/9r8w23sy2v.1
title: Comprehensive Experimental Dataset on Large-Amplitude Rayleigh-Plateau Instability in Continuous InkJet Printing regime

description: This dataset comprises a comprehensive collection of experimental investigations into the dynamic breakup of jetted Newtonian fluids under large-amplitude stimulation conditions using an industrial Continuous InkJet (CIJ) printhead. The dataset includes a wide range of disturbance amplitudes, spanning from 5V to 45V, and covers a variety of fluid properties. For each jet, approximately 55 meticulously captured, dephased images have been generated, offering a dynamic and comprehensive view of the breakup process. Additionally, the dataset provides a wealth of quantitative information, including rheological properties of the included fluids, ensuring the dataset's completeness and integrity.
DOI: 10.17632/7ktf5675hb.1
title: Dataset for iterative approach to determining compromise rankings

description: A decision matrix containing the values used in study on a novel iterative approach to determining compromise rankings
DOI: 10.17632/brsgf8h6dc.1
title: Human PMNs exhibit greater phagocytosis, NETosis, and enhanced migration towards nontypeable Haemophilus influenzae newly released from biofilms Wilbanks et al.

description: Biofilms exhibit diverse evasion mechanisms, thus releasing bacteria from biofilm residence affords both antibiotics and immune effectors greater access. A monoclonal antibody against an essential biofilm matrix protein induces rapid biofilm collapse with release of bacteria into a highly vulnerable phenotype. Newly released (‘NRel’) bacteria are significantly more sensitive to antibiotic-, PMN-, or antimicrobial peptide-mediated killing in vitro, and are rapidly eradicated in four animal models without antibiotic treatment, highlighting the role of innate immune effectors. Here, we characterize PMN-mediated activity against three clinical isolates of nontypeable Haemophilus influenzae NRel. Indeed, NTHI was most sensitive in the NRel state to both PMN-mediated phagocytosis and NETosis elimination. Moreover, PMNs incubated with NTHI NRel released significantly more IL-8 to recruit additional PMNs. These data provide the mechanism and treatment regimen to facilitate host mediated biofilm eradication in our pre-clinical models where biofilm bacteria were induced into the highly vulnerable NRel state.
DOI: 10.17632/pk3ft6wx99.1
title: Coupled in-situ SIMS d34S and LA-ICP-MS trace element data for pyrite from subduction zone related submarine hydrothermal vent fields

description: Coupled SIMS d34S and trace element LA-ICP-MS data of near endmember pyrite from subduction zon related submarine hydrothermal vent fields. The dataset represents the first of its kind, where d34S values and trace element data is coupled on a spatial resolution of approximately 25µm. The dataset reveals a correlation of trace elements with d34S values. The dataset is part of the manuscript from Falkenberg et al. "Pyrite trace element proxies for magmatic volatile influx in submarine subduction-related hydrothermal systems"
DOI: 10.17632/dx69469n8x.1
title: Proteomic analysis of circulating immune cells identifies novel cellular phenotypes associated with COVID-19 severity

description: Certain serum proteins, including CRP and D-dimer, have prognostic value in patients with SARS-CoV-2 infection. Nonetheless, these factors are non-specific, and provide limited mechanistic insight into the peripheral blood mononuclear cell (PBMC) populations which drive the pathogenesis of severe COVID-19. To identify novel cellular phenotypes associated with disease progression, we here describe a comprehensive, unbiased analysis of the total and plasma membrane proteomes of PBMCs from a cohort of 40 unvaccinated individuals with SARS-CoV-2 infection, spanning the whole spectrum of disease severity. Combined with RNA-seq and flow cytometry data from the same donors, we define a comprehensive multi-omic profile for each severity level, revealing cumulative immune cell dysregulation in progressive disease. In particular, the cell surface proteins CEACAMs1, 6 and 8, CD177, CD63 and CD89 are strongly associated with severe COVID-19, corresponding to the emergence of atypical CD3+CD4+CD177+ and CD16+CEACAM1/6/8+ mononuclear cells. Utilisation of these markers may facilitate real-time patient assessment by flow cytometry, and identify immune cell populations that could be targeted to ameliorate immunopathology.
DOI: 10.17632/fdzjhb26wz.1
title: Climatic and landscape evolution of the Azores over the past million years: 2020-2023 geochemical and geochronological data

description: Full data set associated with the thesis project "Climatic and landscape evolution of the Azores over the past million years" by Francisco Hevia-Cruz, under the direction of Anthony Hildenbrand and Nathan D. Sheldon, at Université Paris-Saclay. It corresponds to a single file with six sheets, including the following information: paleosol descriptions, paleosols' major and trace elements geochemistry, paleosols' carbon and nitrogen content, paleosols' delta13C, K-Ar geochronology and 40Ar/39Ar geochronology. As indicated in the file, part of this data was submitted to the Jornal "Quaternary Science Reviews".
DOI: 10.17632/ch4tt4wkvm.1
title: LINF_030011300

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/r92y33x5pp.1
title: Dataset for Turbulent Flow in Binary Interaction: PTV

description: This part covers the collected data for performing the technique Particle Tracking Velocimetry (PTV). The subfolders contain raw images in format .tiff for both cases, images showing the particles' detection after running the pertinent Matlab code, and the tracking of particles along all images. Additionally, MatLab codes are provided to generate data of particle detection and tracking.
DOI: 10.17632/wzrdwc7vvf.1
title: meta隔盐层数据

description: 原始数据和绘图数据
DOI: 10.17632/wzrdwc7vvf
title: meta origin data

description: The increasing soil salinization in agricultural fields, severely affecting soil quality and crop yield, has drawn much attention. Salt barriers, due to their low cost and abundant material sources, are widely used to mitigate salinization. However, effects of salt barriers on soil salinity and crop yield under various environmental factors and salt barriers parameters remain unclear. The present meta-analysis, encompassing 54 studies, quantified the impact of salt barriers on soil salinity and crop yield and the mechanisms by which salt barriers affect yield.
DOI: 10.17632/wzrdwc7vvf.2
title: meta origin data

description: The increasing soil salinization in agricultural fields, severely affecting soil quality and crop yield, has drawn much attention. Salt barriers, due to their low cost and abundant material sources, are widely used to mitigate salinization. However, effects of salt barriers on soil salinity and crop yield under various environmental factors and salt barriers parameters remain unclear. The present meta-analysis, encompassing 54 studies, quantified the impact of salt barriers on soil salinity and crop yield and the mechanisms by which salt barriers affect yield.