cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2cx8cy
title: CCDC 2201910: Experimental Crystal Structure Determination

description: Related Article: Ravi Kumar Bandaru, Lopamudra Giri, Gamidi Rama Krishna, Rambabu Dandela|2024|CrystEngComm|26|248|doi:10.1039/D3CE01130E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cx89w
title: CCDC 2201908: Experimental Crystal Structure Determination

description: Related Article: Ravi Kumar Bandaru, Lopamudra Giri, Gamidi Rama Krishna, Rambabu Dandela|2024|CrystEngComm|26|248|doi:10.1039/D3CE01130E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d7n5h
title: CCDC 2211886: Experimental Crystal Structure Determination

description: Related Article: Xiaomei Jiang, Tiantian Li, Qingzheng Kong, Ying Sun, Xutang Tao|2023|Inorg.Chem.Front.|11|451|doi:10.1039/D3QI01648J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25p6jm
title: CCDC 2016380: Experimental Crystal Structure Determination

description: Related Article: Fangjun Zhang, Keyu Han, Jiamin Cai, Zihao Ye, Jie Zhang, Xigeng Zhou, Zhiming Li|2023|Inorg.Chem.Front.|11|478|doi:10.1039/D3QI02007J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dcb8d
title: CCDC 2215423: Experimental Crystal Structure Determination

description: Related Article: Fangjun Zhang, Keyu Han, Jiamin Cai, Zihao Ye, Jie Zhang, Xigeng Zhou, Zhiming Li|2023|Inorg.Chem.Front.|11|478|doi:10.1039/D3QI02007J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25p6lp
title: CCDC 2016382: Experimental Crystal Structure Determination

description: Related Article: Fangjun Zhang, Keyu Han, Jiamin Cai, Zihao Ye, Jie Zhang, Xigeng Zhou, Zhiming Li|2023|Inorg.Chem.Front.|11|478|doi:10.1039/D3QI02007J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dddz6
title: CCDC 2216468: Experimental Crystal Structure Determination

description: Related Article: Tong Zhou, Yu-Ting Guo, Chun Yang, Xian-Bin Meng, Fu-Sheng Du, Zi-Chen Li|2024|Polym.Chem.|15|156|doi:10.1039/D3PY01250F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ddf19
title: CCDC 2216470: Experimental Crystal Structure Determination

description: Related Article: Tong Zhou, Yu-Ting Guo, Chun Yang, Xian-Bin Meng, Fu-Sheng Du, Zi-Chen Li|2024|Polym.Chem.|15|156|doi:10.1039/D3PY01250F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ddf2b
title: CCDC 2216471: Experimental Crystal Structure Determination

description: Related Article: Tong Zhou, Yu-Ting Guo, Chun Yang, Xian-Bin Meng, Fu-Sheng Du, Zi-Chen Li|2024|Polym.Chem.|15|156|doi:10.1039/D3PY01250F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ddf8j
title: CCDC 2216477: Experimental Crystal Structure Determination

description: Related Article: Tong Zhou, Yu-Ting Guo, Chun Yang, Xian-Bin Meng, Fu-Sheng Du, Zi-Chen Li|2024|Polym.Chem.|15|156|doi:10.1039/D3PY01250F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ddf9k
title: CCDC 2216478: Experimental Crystal Structure Determination

description: Related Article: Tong Zhou, Yu-Ting Guo, Chun Yang, Xian-Bin Meng, Fu-Sheng Du, Zi-Chen Li|2024|Polym.Chem.|15|156|doi:10.1039/D3PY01250F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.25006625
title: Behavioral Choice Experiment (Raw movement data and infection data)

description: The “Behavioral Choice Experiment” focused on whether the priorities of snails infected by trematodes differed from uninfected individuals.
DOI: 10.6084/m9.figshare.25006625.v1
title: Behavioral Choice Experiment (Raw movement data and infection data)

description: The “Behavioral Choice Experiment” focused on whether the priorities of snails infected by trematodes differed from uninfected individuals.
DOI: 10.6084/m9.figshare.24582867
title: Supporting_data Morpho Spiroplasma

description: Supporting data for XX publication
DOI: 10.17632/sfzz7dbshj.1
title: Intensified anti-TNF treatment downregulates the phenotype in ulcerative colitis -a 13 year prospective follow-up study

description: Follow up of UC patitents treated with anti-TNF
DOI: 10.17632/7w4dcrzdmv.1
title: raw image data for "Resilient anatomy and local plasticity of naïve and stress hematopoiesis "_Figure ED 1-10_part_13

description: Extended Data Figure 8 image
DOI: 10.17632/sphbcgbtz7.1
title: Hamstring Myofascial Stiffness Study 2023-4

description: Data from athletes with a previous hamstring injury and controls. Shear wave elastography data from the semitendinosus and biceps femoris in KpA was collected during passive tests from 0, 45 and 90 degrees of knee flexion and during submaximal contractions at 60% of maximum isometric strength. Surface electromyography data were also collected and panoramic ultrasound images were also used to measure the anatomical cross sectional area of some athletes
DOI: 10.6084/m9.figshare.25006631
title: Main characteristics and data outcome of the included studies.

description: Main characteristics and data outcome of the included studies.
DOI: 10.6084/m9.figshare.25006631.v1
title: Main characteristics and data outcome of the included studies.

description: Main characteristics and data outcome of the included studies.
DOI: 10.6084/m9.figshare.25006637.v1
title: Social Movement Experiment (Raw movement data and infection)

description: The “Social Movement Experiment” analyzed the total distance traveled by both infected and uninfected snails within a social environment.
DOI: 10.6084/m9.figshare.25006637
title: Social Movement Experiment (Raw movement data and infection)

description: The “Social Movement Experiment” analyzed the total distance traveled by both infected and uninfected snails within a social environment.
DOI: 10.17632/j2ggw5j822.1
title: raw image data for "Resilient anatomy and local plasticity of naïve and stress hematopoiesis "_Figure ED 1-10_part_11

description: Extended Data Figure 8 image
DOI: 10.17632/j7br6w8d8w.1
title: Flow data for "Resilient anatomy and local plasticity of naïve and stress hematopoiesis "_7

description: Flow data for "Resilient anatomy and local plasticity of naïve and stress hematopoiesis "_7
DOI: 10.17632/8y83t6dh5z.1
title: nerve sheath tumors

description: Our current study, we report an unexpected, effect of piRNA hsa_piR_016187's regulatory function on intraspinal nerve sheath tumors. PiRNA hsa_piR_016187 expression decreased in nerve sheath tumor tissue, and it's possible that piRNA hsa_piR_016187 inhibits the growth of nerve sheath tumor cells. Results using the double luciferase reporter gene suggested that piRNA hsa_piR_016187 might bind to the 3'-UTR region of IGF2. The overexpression of piRNA hsa_piR_016187 increased piRNA expression and IGF2 expression, but decreased IGF2 expression, according to Western blot analysis. PiRNA hsa_piR_016187 inhibits the proliferation of nerve sheath tumorss by regulating the expression of IGF2. Our findings challenge the classic view of Originality and scientific. This theoretical basis provides new research directions for patients who cannot tolerate surgical treatment, with the promise of gene therapy for the disease.
DOI: 10.5519/qd.v72kfah0
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (289 records)
DOI: 10.6084/m9.figshare.25006649
title: PRISMA checklist.

description: PRISMA checklist.
DOI: 10.17632/rftzxh2ch9.1
title: raw image data for "Resilient anatomy and local plasticity of naïve and stress hematopoiesis "_Figure ED 1-10_part_14

description: Extended Data Figure 8b. Lym-d8
DOI: 10.17632/gtj646wfh8.1
title: raw image data for "Resilient anatomy and local plasticity of naïve and stress hematopoiesis "_Figure ED 1-10_part_17

description: Extended Data Figure 9 image
DOI: 10.6084/m9.figshare.25006652
title: Feeding Rate Field Experiment

description: The “Feeding Rate Field Experiment” investigated whether infection altered the feeding rates of host snails in the field.
DOI: 10.6084/m9.figshare.25006652.v1
title: Feeding Rate Field Experiment

description: The “Feeding Rate Field Experiment” investigated whether infection altered the feeding rates of host snails in the field.
DOI: 10.57967/hf/1636
title: eumetsat-iodc
DOI: 10.57967/hf/1637
title: eumetsat-0deg
DOI: 10.5522/04/24866250
title: Bedaquiline and tuberculosis workshop 30 June 2023 full transcript 09oct2023

description: Transcript of webinar held on 30th June 2023 "Bedaquiline and Tuberculosis (TB): What might the future hold?" (https://www.ucl.ac.uk/tb/bedaquiline-and-tb-what-might-future-hold; https://www.youtube.com/watch?v=vQJolt6ebkc). There has been minor editing, with in particular pleasantries removed.
DOI: 10.5522/04/24866250.v1
title: Bedaquiline and tuberculosis workshop 30 June 2023 full transcript 09oct2023

description: Transcript of webinar held on 30th June 2023 "Bedaquiline and Tuberculosis (TB): What might the future hold?" (https://www.ucl.ac.uk/tb/bedaquiline-and-tb-what-might-future-hold; https://www.youtube.com/watch?v=vQJolt6ebkc). There has been minor editing, with in particular pleasantries removed.
DOI: 10.6073/pasta/3dcf0f4c9ed3991b7e4851c9fd61f9d3
title: AOP01 Correspondence between plant traits and NEON Airborne Observatory Platform (AOP) data at Konza Prairie (2017)

description: Understanding spatial and temporal variation in plant traits is needed to accurately predict how communities and ecosystems will respond to global change. The National Observatory Ecological Network (NEON) Airborne Observation Platform (AOP) provides hyperspectral images and associated data products at numerous field sites at 1 m spatial resolution, allowing high-resolution trait mapping. However, the reliability of these data depend on establishing rigorous links with in-situ field measurements. We tested the accuracy of NEON’s readily available AOP derived data products – Leaf Area Index, Total biomass, Ecosystem structure (Canopy height model; CHM), and Canopy Nitrogen by comparing them to spatially extensive field measurements from a mesic tallgrass prairie. Correlations with AOP data products exhibited generally weak or no relationships with corresponding field measurements. The weakest relationships were between AOP Canopy Nitrogen and ground-based measures of Nitrogen, as well as the CHM and ground-based canopy height measurements. We also examined how well the full reflectance spectra (380-2500 nm), as opposed to derived products, could predict vegetation traits using partial least-squares regression models. Only one of the eight traits examined, Nitrogen, had an R2 of more than 0.25. For all vegetation traits, R2 ranged from 0.08-0.29 and the root mean square error of prediction ranged from 14-64%. Our results suggest that currently available AOP derived data products are unreliable, at least at this grassland site, and should not be used without extensive ground-based validation. Relationships using the full reflectance spectra may be more promising, although additional assessment of varying spatial scales of field and AOP data, as well as corrections and data pre-processing to improve data quality, are recommended. Finally, grassland sites may be especially challenging for airborne spectroscopy because of their high species diversity within a small area, mixed functional types of plant communities, and heterogenous mosaics of disturbance and resource availability. Remote sensing observations are one of the most promising approaches to understanding ecological patterns across space and time, yet the opportunity to engage a diverse community of NEON data users will depend on establishing empirical relationships with field measurements across a diversity of sites.
DOI: 10.25345/c5pc2tm1r
title: MassIVE MSV000093873 - Toggling of BRD4 functions is triggered through its phosphorylation by JNK
title: BRD4 is a key regulatory factor in multiple cancers and cellular stress responses with pleotropic functions. BRD4 regulates chromatin remodeling and transcription through its histone acetyltransferase (HAT) and kinase activities, respectively. The mechanism responsible for switching BRD4 from a chromatin to transcriptional regulator is currently unknown. Here, we report that in response to a broad range of stimuli, this switch is mediated by the JNK kinase which directly interacts with BRD4. JNK specifically phosphorylates human BRD4 at Ser1117, Thr1186 and Thr1212, triggering transient BRD4 release from chromatin. JNK phosphorylation of BRD4 halts its HAT-mediated chromatin regulation and activates its transcription-enhancing kinase function. BRD4 release from chromatin is necessary to toggle between its enzymatic activities: chromatin-bound BRD4 is kinase inactive and RNA Pol II-bound BRD4 does not acetylate chromatin. BRD4 release from chromatin augments its interaction with and phosphorylation of key transcriptional regulators RNA Pol II, PTEFb and c-MYC. The PP4 phosphatase dephosphorylates JNK phosphorylated BRD4 in the nucleoplasm, which promotes its interaction with RNA Pol II at transcriptionally active sites. Accordingly, JNK-mediated release of BRD4 from chromatin leads to significantly elevated transcription of BRD4-regulated immune and inflammatory response genes through enhanced BRD4-Pol II interaction at the promoters of these genes. JNK phosphorylation of BRD4 occurs during T-cell activation and is required for epithelial to mesenchymal transition (EMT) in prostate cancer cells. These findings thus characterize a novel mechanism that triggers the transition of BRD4 from a chromatin regulator to transcriptional activator during stress/immune/inflammatory responses and EMT.
DOI: 10.5281/zenodo.10474255
title: Raw data from 'Super-sectioning with Multi-sheet REversible Saturable OpticaL Fluorescence Transitions (RESOLFT) microscopy'

description: This repostitory contains the raw datasets from the imaging experiments performed and presented in the manuscript 'Super-sectioning with Multi-sheet REversible Saturable OpticaL Fluorescence Transitions (RESOLFT) microscopy'.

 

The following links the figures of the manuscript to the datasets

Fig. 3:

     - MAP2-rsEGFP(N205S)_in_HeLa_Cells_ConvOPM_RAW.tif

     - MAP2-rsEGFP(N205S)_in_HeLa_Cells_MultiSheetRESOLFT_RAW.tif

Fig. 4:

     - Actin_chromobody-rsEGFP(N205S)_HeLa_Cell_2_MultiSheetRESOLFT_Timelapse_RAW.hdf5

     - Actin_chromobody-rsEGFP(N205S)_HeLa_Cells_ConvOPM_RAW.tif

     - Actin_chromobody-rsEGFP(N205S)_HeLa_Cells_MultiSheetRESOLFT_RAW.tif

Fig. 5:

     - H2B-rsEGFP2_HeLa_Cells_MultiSheetRESOLFT_Timelapse_RAW.hdf5

Fig. 6:

     - 1-Gag-IM-rsEGFP2_HeLa_Cells_MultiSheetRESOLFT_Timelapse_RAW.hdf5

Extended Data Fig. 1:

     - MAP2-rsEGFP(N205S)_in_HeLa_Cells_ConvOPM_RAW.tif

     - MAP2-rsEGFP(N205S)_in_HeLa_Cells_MultiSheetRESOLFT_RAW.tif

Extended Data Fig. 2:

     - Actin_chromobody-rsEGFP(N205S)_HeLa_Cell_2_MultiSheetRESOLFT_Timelapse_RAW.hdf5

     - Actin_chromobody-rsEGFP(N205S)_HeLa_Cells_ConvOPM_RAW.tif

     - Actin_chromobody-rsEGFP(N205S)_HeLa_Cells_MultiSheetRESOLFT_RAW.tif

Extended Data Fig. 3:

     - 1-Gag-IM-rsEGFP2_HeLa_Cells_MultiSheetRESOLFT_Timelapse_RAW.hdf5

Extended Data Fig. 4:

     - 1-Gag-IM-rsEGFP2_HeLa_Cells_MultiSheetRESOLFT_Timelapse_RAW.hdf5

Supplementary Fig. 3

     - 1-Gag-IM-rsEGFP2_HeLa_Cells_MultiSheetRESOLFT_Timelapse_RAW.hdf5

Supplementary Fig. 5

     - 2-Gag-IM-rsEGFP2_HeLa_Cells_MultiSheetRESOLFT_RAW.hdf5
DOI: 10.5281/zenodo.10474256
title: Raw data from 'Super-sectioning with Multi-sheet REversible Saturable OpticaL Fluorescence Transitions (RESOLFT) microscopy'

description: This repostitory contains the raw datasets from the imaging experiments performed and presented in the manuscript 'Super-sectioning with Multi-sheet REversible Saturable OpticaL Fluorescence Transitions (RESOLFT) microscopy'.

 

The following links the figures of the manuscript to the datasets

Fig. 3:

     - MAP2-rsEGFP(N205S)_in_HeLa_Cells_ConvOPM_RAW.tif

     - MAP2-rsEGFP(N205S)_in_HeLa_Cells_MultiSheetRESOLFT_RAW.tif

Fig. 4:

     - Actin_chromobody-rsEGFP(N205S)_HeLa_Cell_2_MultiSheetRESOLFT_Timelapse_RAW.hdf5

     - Actin_chromobody-rsEGFP(N205S)_HeLa_Cells_ConvOPM_RAW.tif

     - Actin_chromobody-rsEGFP(N205S)_HeLa_Cells_MultiSheetRESOLFT_RAW.tif

Fig. 5:

     - H2B-rsEGFP2_HeLa_Cells_MultiSheetRESOLFT_Timelapse_RAW.hdf5

Fig. 6:

     - 1-Gag-IM-rsEGFP2_HeLa_Cells_MultiSheetRESOLFT_Timelapse_RAW.hdf5

Extended Data Fig. 1:

     - MAP2-rsEGFP(N205S)_in_HeLa_Cells_ConvOPM_RAW.tif

     - MAP2-rsEGFP(N205S)_in_HeLa_Cells_MultiSheetRESOLFT_RAW.tif

Extended Data Fig. 2:

     - Actin_chromobody-rsEGFP(N205S)_HeLa_Cell_2_MultiSheetRESOLFT_Timelapse_RAW.hdf5

     - Actin_chromobody-rsEGFP(N205S)_HeLa_Cells_ConvOPM_RAW.tif

     - Actin_chromobody-rsEGFP(N205S)_HeLa_Cells_MultiSheetRESOLFT_RAW.tif

Extended Data Fig. 3:

     - 1-Gag-IM-rsEGFP2_HeLa_Cells_MultiSheetRESOLFT_Timelapse_RAW.hdf5

Extended Data Fig. 4:

     - 1-Gag-IM-rsEGFP2_HeLa_Cells_MultiSheetRESOLFT_Timelapse_RAW.hdf5

Supplementary Fig. 3

     - 1-Gag-IM-rsEGFP2_HeLa_Cells_MultiSheetRESOLFT_Timelapse_RAW.hdf5

Supplementary Fig. 5

     - 2-Gag-IM-rsEGFP2_HeLa_Cells_MultiSheetRESOLFT_RAW.hdf5
DOI: 10.6084/m9.figshare.25003430
title: Geo-mapping of Zé Pereira CZO

description: Georeferenced physical data from the José Pereira river basin.
DOI: 10.18112/openneuro.ds004929.v1.0.0
title: BallSqueezingHD
DOI: 10.6084/m9.figshare.25006742.v1
title: Supplementary Material for: Retinal pigment epithelial adenoma: Initial treatment outcomes following episcleral brachytherapy

description: Introduction:
To explore the safety and efficacy of episcleral brachytherapy as a primary management option for eyes with retinal pigment epithelial (RPE) adenoma.
Methods: 
Retrospective chart review of the demographic, clinical, ancillary, and post-operative outcome data of patients with RPE adenoma in 2 tertiary referral centers. Tumor regression, final visual acuity, and complications were assessed.
Results: 
5 patients (3 females and 2 males) were included. 4 of the 5 eyes had peripheral and mid-peripheral lesions, while one tumor was juxtapapillary. 3 eyes were treated with Ruthenium-106 (100 Gray), and 2 received Iodine-125 episcleral plaques (85 Gray). All eyes showed clinical and imaging-based evidence of regression. 4 eyes had stable or improved visual acuity, while 1 eye exhibited one line loss of visual acuity due to radiation retinopathy. Local recurrence was not observed in any eye over a median follow-up of 24 (range 6-112) months.
Conclusions: 
Episcleral brachytherapy is an effective management option for select cases of RPE adenoma that is capable of achieving tumor regression while maintaining favorable visual acuity. The initial safety profile of brachytherapy is good without significant vision-compromising complications.