cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.v0t4qm3/1
title: All data.

description: Data include results from a cafeteria-style preference experiment, observational data of relative abundances of tree species across a 12-ha forest plot and results from factorial snail and deer exclusion field experiments. Data for each figure in the manuscript are shown on separate spreadsheets. Abbreviated headlines are as follows: "species" = plant species, "abund" = % abundance plant species across 12-ha forest plot, "loss" = % biomass loss due to snail feeding, "SE loss" = standarderror for biomass loss, "feeding_rank" = 1 (least preferred) to 6 (most preferred by snails), "snail_treatment" = snail addition, exclusion or not manipulated (control) in the field experiments, "biomass" = LSmeans of seedling biomass after 1 year in field experiment, "SE" = standarderror for biomass, "log_response" = log response ratio of species biomass to the 'snails added' treatment relative to the ‘snail exclusion’ treatment, "CI" = 95% confidence interval.
DOI: 10.5061/dryad.v2j34j1/1
title: rpn_wheat_phenotypes

description: This file includes height, yield, and heading date phenotypic data for the entries evaluated in this study. Everest and TAM 112 were the two check cultivars used in the experimental design. Additional entries are identified in the line_num column by the designation assigned upon entry into the Regional Performance Nursery. Experimental names, when available, are included in the line_name column.
DOI: 10.17632/6t24yp95km.1
title: Data for: Monte Carlo Fuel Burnup Analyses of the Accelerator-Driven Subcritical Systems

description: This excel file includes the raw monte carlo simulation data performed for the ANL ADS design.
DOI: 10.17632/rmh2gbmv46.1
title: Data for: DEMs generation from Worldview-2 stereo imagery and vertical accuracy assessment for its application in active tectonics
DOI: 10.5061/dryad.0vt4gm8/2
title: Walczyk _ Hersch-Green 2019_AJB_Dryad File_2
DOI: 10.5061/dryad.0vt4gm8/3
title: Walczyk _ Hersch-Green 2019_AJB_Dryad File_3
DOI: 10.5061/dryad.1q33s69/1
title: Comparative-data_HybridZone_correlation_2019-04-04

description: data for correlation analysis
DOI: 10.5061/dryad.1q33s69/2
title: Buteo_lineatus_Specimen_LatLong

description: data for MAXENT
DOI: 10.5061/dryad.1q33s69/3
title: RsHawk_Specimen_EcoVariable_Correlation_Matrix

description: data for MAXENT
DOI: 10.5061/dryad.1q33s69/4
title: Buteo_lineatus_ND2_haps_hybrid_zone_SAS

description: data for SAS logistic regression
DOI: 10.5061/dryad.2b6n12q/1
title: jfs-bcm-tls-mjb_tables_figures_scrips_data_ESM

description: All scripts and datasets required to run the analyses described in 'Does exceptional preservation distort our view of disparity in the fossil record?'
DOI: 10.5061/dryad.2ck7120/81
title: DNA27_MFZR.tar

description: Fastq file with raw data of Illumina reads
Plate: DNA27
Marker: MFZR
Tag combinations to identify the samples from each fastq files are found in the 'CSV file with metadata on fastq files'
DOI: 10.5061/dryad.2ck7120/82
title: DNA27_ZFZR.tar

description: Fastq file with raw data of Illumina reads
Plate: DNA27
Marker: ZFZR
Tag combinations to identify the samples from each fastq files are found in the 'CSV file with metadata on fastq files'
DOI: 10.5061/dryad.2ck7120/83
title: Ext7.tar

description: Fastq file with raw data of Illumina reads
Plate: Ext7
Marker: LFCR, MFZR, ZFZR
Tag combinations to identify the samples from each fastq files are found in the 'CSV file with metadata on fastq files'
DOI: 10.5061/dryad.2hd8b0s/1
title: Functional trait data and GenBank sequences for Annonaceae

description: This file contains all of the data recorded in the PROTEUS database to produce the NEXUS trait matrix, including: PrimaryCharacters; PrimaryCharacterstates; References; PrimaryDataMatrix; Matrix for analysis; Updated taxonomy; GenBank sequences.
DOI: 10.5061/dryad.2hd8b0s/2
title: Annonaceae maximum clade credibility (MCC) phylogenetic tree

description: We reconstructed and dated the Annonaceae phylogenetic tree in BEAST 1.8.2. We used the uncorrelated lognormal clock model and a Yule birth prior. Substitution rates of markers were linked, and we used the GTR + gamma + invariant sites substitution rate model. To date the Annonaceae, we used the fossils Endressinia (most-recent common ancestor of Magnoliaceae and Annonaceae; 113 Ma) for the split between Magnoliaceae and Annonaceae, and Futabanthus (89 Ma) for the Annonaceae crown node (for more details, see Appendix S2). Please note that some of the taxonomic names have been changed (can be found in Appendix S1 [= Dryad file "Functional trait data and GenBank sequences in Annonaceae"]) and should be updated in future use of this datafile. In case you need 100 trees from the posterior distribution, please write to Renske Onstein (onsteinre@gmail.com).
DOI: 10.5061/dryad.2hd8b0s/3
title: Annonaceae Supermatrix Alignment

description: We sampled 234 Annonaceae species (c. 10% of total) representing 105 (c. 97% of total) genera and all four subfamilies, and seven outgroup taxa from related families. For these species, we generated a molecular supermatrix of eight plastid markers as assembled by Chatrou et al. (2012) supplemented with 157 additional sequences for 37 species. For details on the methods, see Chatrou et al. (2012), GenBank numbers for the new sequences are provided in Appendix S1 (= Dryad file "Functional trait data and GenBank sequences in Annonaceae"). Please note that in the meantime some of the taxonomic names have changed (can also be found in Appendix S1) and should be updated in future use of this datafile.
DOI: 10.5061/dryad.3k5c0sh/29
title: JA14300_ddRAD_Pool3_ACGATT_L008_R2 raw reads
DOI: 10.5061/dryad.3k5c0sh/30
title: JA14300_ddRAD_Pool4_GTATTA_L008_R1 raw reads
DOI: 10.5061/dryad.3k5c0sh/31
title: JA14300_ddRAD_Pool4_GTATTA_L008_R2 raw reads
DOI: 10.5061/dryad.3k5c0sh/32
title: JA14785_pool1_CGTACG_L003_R1 raw reads
DOI: 10.5061/dryad.3k5c0sh/33
title: JA14785_pool1_CGTACG_L003_R2 raw reads
DOI: 10.5061/dryad.3k5c0sh/35
title: Input files for BPP analyses.

description: An archive containing the input files necessary to replicate the BPP analyses, including an excel workbook listing different combinations of priors tested.
DOI: 10.5061/dryad.3k5c0sh/36
title: Infiles and R code for hierarchical F-statistic analyses.

description: An archive containing the three input files and R code for hierarchical F-statistic analyses using the HierFstat package in R. Each input file has a corresponding excel worksheet listing the subbasin, watershed, and subpopulation names that are coded as integers in the input files.
DOI: 10.5061/dryad.3pc3j00.1
title: Data from: Management trade-offs on ecosystem services in apple orchards across Europe: direct and indirect effects of organic production
DOI: 10.5061/dryad.3pc3j00.1/2.1
title: Data matrix used for structural equation model

description: The data matrix includes all variables included in the structural equation model analysed in the paper. The variable descriptions and the statistical code is found in the README-file
DOI: 10.5061/dryad.3pc3j00.2
title: Data from: Management trade-offs on ecosystem services in apple orchards across Europe: direct and indirect effects of organic production
DOI: 10.5061/dryad.3pc3j00.2/2.2
title: Data matrix used for structural equation model

description: The data matrix includes all variables included in the structural equation model analysed in the paper. The variable descriptions and the statistical code is found in the README-file
DOI: 10.5061/dryad.3td78sk/1
title: Capture data of bats in modified forest landscape

description: Capture data of bats in modified forest landscapes. Data was collected in sites with forest without streams, forest with streams, and sites where riparian forest strips were surrounded by open areas where forest was clear-cut. The file includes two sheets: "DataBase" with the capture data and "DataDescription" explaining the content of "DataBase".
DOI: 10.5061/dryad.5qd0gd0/1
title: Size corrected phylogenetic independent contrast

description: Size corrected phylogenetic independent contrast for every sister pair among New World grunts
DOI: 10.5061/dryad.686t5s2/1
title: Data total of trees and sites parameters

description: This is an excel file with trees and sites variables collected in 15 studied forests in the North  of Tunisia.
DOI: 10.5061/dryad.6t1m4k4/17
title: LC-MS Raw Data RARRES1 KD (7) (xaf)

description: We split the LC-MS raw data using the "Split" Linux function into 17 files (combine using "cat xaa xab ... &gt; lcms.zip")
DOI: 10.5061/dryad.6t1m4k4/18
title: LC-MS Raw Data RARRES1 KD (7) (xag)

description: We split the LC-MS raw data using the "Split" Linux function into 17 files (combine using "cat xaa xab ... &gt; lcms.zip")
DOI: 10.5061/dryad.6t1m4k4/19
title: LC-MS Raw Data RARRES1 KD (8) (xah)

description: We split the LC-MS raw data using the "Split" Linux function into 17 files (combine using "cat xaa xab ... &gt; lcms.zip")
DOI: 10.5061/dryad.6t1m4k4/20
title: LC-MS Raw Data RARRES1 KD (9) (xai)

description: We split the LC-MS raw data using the "Split" Linux function into 17 files (combine using "cat xaa xab ... &gt; lcms.zip")
DOI: 10.5061/dryad.6t1m4k4/21
title: LC-MS Raw Data RARRES1 KD (10) (xaj)

description: We split the LC-MS raw data using the "Split" Linux function into 17 files (combine using "cat xaa xab ... &gt; lcms.zip")
DOI: 10.5061/dryad.6t1m4k4/22
title: LC-MS Raw Data RARRES1 KD (11) (xaK)

description: We split the LC-MS raw data using the "Split" Linux function into 17 files (combine using "cat xaa xab ... &gt; lcms.zip")
DOI: 10.5061/dryad.6t1m4k4/23
title: LC-MS Raw Data RARRES1 KD (12) (xaL)

description: We split the LC-MS raw data using the "Split" Linux function into 17 files (combine using "cat xaa xab ... &gt; lcms.zip"
DOI: 10.5061/dryad.6t1m4k4/24
title: LC-MS Raw Data RARRES1 KD (13) (xaM)

description: We split the LC-MS raw data using the "Split" Linux function into 17 files (combine using "cat xaa xab ... &gt; lcms.zip")
DOI: 10.5061/dryad.6t1m4k4/25
title: LC-MS Raw Data RARRES1 KD (14) (xaN)

description: We split the LC-MS raw data using the "Split" Linux function into 17 files (combine using "cat xaa xab ... &gt; lcms.zip")
DOI: 10.5061/dryad.6t1m4k4/26
title: LC-MS Raw Data RARRES1 KD (14) (xao)

description: We split the LC-MS raw data using the "Split" Linux function into 17 files (combine using "cat xaa xab ... &gt; lcms.zip")
DOI: 10.5061/dryad.84q73s8.1
title: Data from: Neuromuscular adverse events associated with Anti-PD-1 monoclonal antibodies: systematic review
DOI: 10.5061/dryad.84q73s8.1/1.1
title: Data_Dryad
DOI: 10.5061/dryad.84q73s8.2/3.2
title: Flow-chart of the systematic literature search
DOI: 10.5061/dryad.84q73s8.2/4.2
title: References e61-e88
DOI: 10.5061/dryad.84q73s8.2/5.2
title: PRISMA 2009 checklist
DOI: 10.5061/dryad.9r2p3ks/2
title: proteins_from_10kbp_scaffolds

description: These are the predicted protein sequences from maker for scaffolds greater than 10 kbp in length
DOI: 10.5061/dryad.9r2p3ks/4
title: blast2go_blastx_results_proteins

description: This file is a file containing the blast descriptions for all of the predicted proteins (regardless of scaffold size) for the genome.
DOI: 10.5061/dryad.b6f4n81/1
title: Nunes et al_Data_Amphibians meta-analysis

description: Data extracted from several papers that was used for this meta-analysis
DOI: 10.5061/dryad.d4s8357/1
title: Bayesian tree concatenated alignments (6 species) - Posterior output.newick
DOI: 10.5061/dryad.d4s8357/2
title: Concatenated alignments (6 species)
DOI: 10.5061/dryad.d4s8357/3
title: ML tree of Concatenated alignments (6 species).newick
DOI: 10.5061/dryad.d4s8357/4
title: Allometry_all microvelia species
DOI: 10.5061/dryad.d4s8357/5
title: Condition-dependence&selection_experiments
DOI: 10.5061/dryad.d4s8357/6
title: Script allometry Microvelia Species
DOI: 10.5061/dryad.d4s8357/7
title: script_condition dependence&selection
DOI: 10.5061/dryad.gk1r3s5/1
title: Grinath_et_al_2019_Oikos_Quadrat_Data

description: These data are from Grinath et al. 2019.  Quadrat data are from 1 m² sampling quadrats located within paired 100 m² plots at each of 18 experimental sites (n = 282 quadrats in 36 plots).
DOI: 10.5061/dryad.gk1r3s5/2
title: Grinath_et_al_2019_Oikos_Plot_Data

description: These data are from Grinath et al. 2019.  Plot data represent variables across whole plots (including within or across burrow and inter-burrow habitats).  Soil nitrogen mineralization was measured at the plot level, but other soil properties were averaged across quadrats within plots.  At this level, plant species quadrat data (pin hits) were summed and then used to obtain rarefied measures of alpha, beta and gamma diversity.
DOI: 10.5061/dryad.j307mv3/1
title: Amplicon alignments
DOI: 10.5061/dryad.m9n940m/1
title: Reflectance Data _ Peacock Spiders Super Black

description: Here we report all of the reflectance spectra gathered from the black, red, and blue regions of two species of peacock spiders (Maratus speciosus, Maratus karrie), black reflecance spectra from the normal shiny black spider Cylistella, and black, red, and blue regions of the bird of paradise Dreparnornis bruinjii.
DOI: 10.5061/dryad.m9n940m/2
title: 2018-08-18Spider_vs16_SuperHex

description: Lumerical script file for examining microlens arrays on spider cuticle.
DOI: 10.5061/dryad.m9n940m/3
title: 2018-08-14Spider_vs14_share_vs2

description: Lumerical FDTD project file for examining microlens arrays on spider cuticle.
DOI: 10.5061/dryad.pg8q56g/2
title: MD5 checksums for data files

description: This file contains the checksums to verify file integrity of the data files.
DOI: 10.5061/dryad.pg8q56g/3
title: Hamlet genome annotation

description: This file contains the genome annotation of the hamlet genome (Hypoplectrus puella).
DOI: 10.5061/dryad.pg8q56g/4
title: Phased genotypes of Caribbean reef fishes (Hypoplectrus sp.)

description: Genotypes of 110 hamlets (H. nigricans, H. puella and H. unicolor).
Based on ~24x Illumina sequencing data, created with GATK and phased using SHAPEIT.
DOI: 10.5061/dryad.qh46k18/1
title: Juarez_et_al_data

description: This zip file contains data and metadata for: 1) species maximum values, 2) individual values for specimens from the NMNH, and 3) species maximum values sent to us by Dr. Anna Syme.
DOI: 10.5061/dryad.r4s16vs/1
title: Duffield et al 2019_CallingEffort

description: Calling effort of inbred (across 4 genetically distinct inbred lines) and outbred male crickets following treatment from an increasing spectrum of infection cue intensity using heat-killed bacteria.
DOI: 10.5061/dryad.r4s16vs/2
title: Duffield et al 2019_ImmuneAssays

description: Immune measurements of inbred (across 4 genetically distinct inbred lines) and outbred male crickets following treatment from an increasing spectrum of infection cue intensity using heat-killed bacteria.
DOI: 10.5061/dryad.rh66vg2/2
title: Dataset S1

description: NEXUS file of all terminal taxa used in these phylogenetic analyses
DOI: 10.5061/dryad.rh66vg2/3
title: DatasetS2

description: NEXUS file of all terminal taxa used in the phylogenetic analysis based on the Ezcurra (2017) matrix
DOI: 10.5061/dryad.sm12b53/1
title: Western Blot
DOI: 10.17632/6wmctp2cgb.1
title: Data for: An Efficient model for Prediction of Calcium Sulfate Di-hydrate Solubility in Aqueous Electrolyte Solutions Over Wide Temperature Ranges

description: Computer Models for Prediction of Calcium Sulfate Di-hydrate Solubility in Aqueous Electrolyte Solutions Over Wide Temperature Ranges
DOI: 10.17632/96pfw87s4p.1
title: Data for: Amphibian and reptile communities of upland and riparian sites across Indonesian oil palm, rubber and forest

description: These CSV files contain the data collected during the study. The R script enables to merge the data and analyse them using statistical models and figures.
DOI: 10.5061/dryad.0pc151n/1
title: Acherontiscus scan data and 3D files

description: The CT scan images and metadata for 'Acherontiscus' along with the 3D files used to create images for the paper. This data consists of over 2000 images.
DOI: 10.5061/dryad.0pc151n/2
title: Acherontiscus movies

description: Acherontiscus left lower jaw removed.mov, Acherontiscus left lower jaw.mov, Acherontiscus skull roof.mov
DOI: 10.5061/dryad.1mj39tf/1
title: Individual and species data

description: Sheet 1: Individual data points for each sperm cell (sperm abnormality counts and total sperm length), as well as accession numbers for the sperm bank at the Natural History Museum in Oslo. Sheet 2: Species mean data from Støstad et al. (2018), including sperm traits based on SEM images as well as data on the rates of extra-pair young
DOI: 10.5061/dryad.1q33s69/10
title: Buteo_3genes_heredity_BPP

description: BPP heredity file: haploid vs diploid loci
DOI: 10.5061/dryad.1q33s69/11
title: Buteo_3genes_sequences_BPP

description: BPP DNA sequences
DOI: 10.5061/dryad.1q33s69/12
title: B_lineatus-G3PDH-3groups

description: Buteo lineatus G3PDH DNA script and sequences for Arlequin
DOI: 10.5061/dryad.1q33s69/13
title: B_lineatus-ND2-3groups

description: Buteo lineatus ND2 script and sequences for Arlequin
DOI: 10.5061/dryad.1q33s69/5
title: Melanerpes_carolinus_ND2_haps_hybrid_zone_SAS

description: data for SAS logistic regression
DOI: 10.5061/dryad.1q33s69/6
title: Poecile_carolinensis_mtDNA-RestrictionSites_SAS

description: data for SAS logistic regression
DOI: 10.5061/dryad.1q33s69/7
title: Strix_varia_mtDNA-ControlRegion_haps_hybrid_zone_SAS

description: data for SAS logistic regression
DOI: 10.5061/dryad.1q33s69/8
title: Buteo_3genes_BPP

description: BPP control file
DOI: 10.5061/dryad.1q33s69/9
title: Buteo_3genes_BPP

description: BPP geography imap file
DOI: 10.5061/dryad.270600g/1
title: Maldives coral reef stable isotope ratios

description: Natural abundance stable isotope ratios of three species of corals and particulate organic matter from shallow (10 m) and deep (30 m) coral reefs in the Maldives, Indian Ocean. Samples collected from coral reefs of oceanic and Inner Sea reef exposures. Samples collected in the spring inter-monsoon period in 2015.
DOI: 10.5061/dryad.35h2v0b/1
title: Morimoto-et-al_RawData-RoySocOpenSci

description: The compressed file contains all raw data used in the paper.
DOI: 10.5061/dryad.47p0h64/1
title: Raw data_sperm phenotypes and genotypes

description: Excel file containing all data used for the analyses presented in the manuscript.
DOI: 10.5061/dryad.4sm0dq1/1
title: Hermit crab shell assessment under noise
DOI: 10.5061/dryad.5sv75bd/1
title: Data of isolated lakes

description: Data of Isolated lakes including, lake ID, name of the lake, presence/absence of species including presence of piscivores (noted pisc in the table), species richness (excluding piscivores), altitude, depth, pH, distance to sea, area, and catchment.
DOI: 10.5061/dryad.6qm33c6/1
title: Concatenated sequence alignment

description: This is data from De-Silva et al. 2017, which has been concatenated and trimmed for this study. These alignments were used in both Bayesian and Maximum Likelihood analyses.
DOI: 10.5061/dryad.6qm33c6/2
title: ML tree  (molecular and morphology data)

description: Tree file resulting from ML analysis with a dataset that includes molecular and morphology data from De-Silva et al. 2017.
DOI: 10.5061/dryad.6qm33c6/3
title: BI tree

description: Tree file resulting from BI with a dataset that includes molecular data from De-Silva et al. 2017.
DOI: 10.5061/dryad.6qm33c6/4
title: ML tree (molecular data)

description: Tree file resulting from ML analysis with a dataset that includes molecular data from De-Silva et al. 2017.
DOI: 10.5061/dryad.6qm33c6/5
title: ML tree  (morphology data)

description: Tree file resulting from ML analysis with a dataset that includes morphology data from De-Silva et al. 2017.
DOI: 10.5061/dryad.6t1m4k4/27
title: LC-MS Raw Data RARRES1 KD (16) (xap)

description: We split the LC-MS raw data using the "Split" Linux function into  17 files (combine using "cat xaa xab ... &gt; lcms.zip")
DOI: 10.5061/dryad.6t1m4k4/28
title: LC-MS Raw Data RARRES1 KD (17) (xaq)

description: We split the LC-MS raw data using the "Split" Linux function into 17 files (combine using "cat xaa xab ... &gt; lcms.zip")
DOI: 10.5061/dryad.707d540/5
title: LO Letters format metadata
DOI: 10.5061/dryad.707d540/6
title: Table_S1
DOI: 10.5061/dryad.707d540/7
title: Table_S2
DOI: 10.5061/dryad.8030nq9/1
title: Scripts

description: Scripts for processing avian haemosporidian sequence capture data. Example steps for the data processing pipeline are provided in the textfile 'example_pipeline_steps.txt', beginning from demultiplexed fastq files through RAxML alignments for phylogenetic analysis.
DOI: 10.5061/dryad.8m3t2p2/1
title: Black abalone size data through time on the Channel Islands

description: File contains size data of black abalone from island archaeological sites and modern survey data
DOI: 10.5061/dryad.d0mv3dh/1
title: Blue whale individual CEE results_JEB for Dryad

description: Expert scoring and Mahalanobis distance figures as well as metadata syntheses of results are given for all 42 blue whale subjects
DOI: 10.5061/dryad.d4s8357/8
title: script_male fighting
DOI: 10.5061/dryad.d4s8357/9
title: script_paternity test_FV
DOI: 10.5061/dryad.fj974.1
title: Data from: Life history profiles for 27 strepsirrhine primate taxa generated using captive data from the Duke Lemur Center
DOI: 10.5061/dryad.fj974.1/7.1
title: DataRecord_1b_DLC_LH_Table_Analysis_06Jun14

description: The DLC Strepsirrhine Life History Summary Table contains 91 variables for 27 taxa. There are two versions of this file provided; they contain the same information but are formatted for different uses. The first, data record 1a, is a reference version, with all variables in character format in each of 91 rows, and 27 columns each referencing a different taxon. The reference version is designed to facilitate locations of particular data points for particular taxon that a user may be interested in and can be found in the HTML version of the associated manuscript. The second, data record 1b, is an analysis version that contains a mixture of character and numeric variables each in one of 91 columns, with a row for each of the 27 species. While it is perhaps more difficult to find a specific data point in this table, this version can be imported directly into analysis software for comparison of variables across taxa. Data record 1b is stored as comma separated values.
DOI: 10.5061/dryad.fj974.2
title: Data from: Life history profiles for 27 strepsirrhine primate taxa generated using captive data from the Duke Lemur Center
DOI: 10.5061/dryad.fj974.2/1.2
title: README - DLC Data Update Details Feb 2019

description: This document contains details relating to the Duke Lemur Center (DLC) data update released in February 2019.
DOI: 10.5061/dryad.fj974.2/7.2
title: DataRecord_1b_DLC_LH_Table_Analysis_05Feb2019

description: The DLC Strepsirrhine Life History Summary Table contains 91 variables for 27 taxa. There are two versions of this file provided; they contain the same information but are formatted for different uses. The first, data record 1a, is a reference version, with all variables in character format in each of 91 rows, and 27 columns each referencing a different taxon. The reference version is designed to facilitate locations of particular data points for particular taxon that a user may be interested in and can be found in the HTML version of the associated manuscript. The second, data record 1b, is an analysis version that contains a mixture of character and numeric variables each in one of 91 columns, with a row for each of the 27 species. While it is perhaps more difficult to find a specific data point in this table, this version can be imported directly into analysis software for comparison of variables across taxa. Data record 1b is stored as comma separated values.