cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29951813.v1
title: Changes in the Drivers of the Canadian Dollar Exchange Rate Before and After COVID-19.xlsx

description: This dataset contains the final cleaned data used in the manuscript "<b>Changes in the Drivers of the Canadian Dollar Exchange Rate Before and After COVID-19: </b><b>An Empirical Analysis Using Multiple Linear Regression</b>". The analyses were performed using IBM SPSS Statistics (version 26). The main results can be reproduced by importing this data into SPSS and running a standard multiple linear regression with CAD exchange rate as the outcome variable and WTI Price, Inflation Rate, Unemployment Rate, Real GDP Growth Rate as predictors.
DOI: 10.15468/dl.4eg4y6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Winteria telescopa Brauer, 1901",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((17.9648 28.8496,8.9648 28.8496,8.9648 19.8496,17.9648 19.8496,17.9648 28.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010107-250525065834625/datasets/export for details.
DOI: 10.5061/dryad.741c4q3
title: Data from: Population genomics of Fundulus grandis exposed to oil from Deepwater Horizon

description: The April 2010 Deepwater Horizon (DWH) oil spill released over 4 million
 barrels of oil into northern Gulf of Mexico ecosystems. Due to the
 magnitude of the spill and observed effects from previous spills, the
 ecological impacts were predicted to be catastrophic. While negative
 effects of petroleum hydrocarbon exposure to fish have been documented at
 the organismal scale, most studies of fish assemblages have noted few, if
 any, DWH impacts. Our understanding of DWH effects is therefore limited by
 a disconnect in results reported at different organizational levels. We
 used population genomic tools to test hypotheses about population-level
 DWH impacts to Gulf Killifish (Fundulus grandis) in coastal Mississippi.
 Fundulus grandis is one of the most abundant marsh species in the northern
 Gulf of Mexico, and along with the sister species F. heteroclitus, has
 served as a model for toxicology research. We collected genotyping by
 sequencing data from four populations of F. grandis (two oiled and two
 not) to test predictions about DWH-related gene flow, demographics,
 genetic diversity and evidence of selection. Mississippi populations of F.
 grandis showed clear genetic structure, but there were few indicators
 (e.g. reduced genetic diversity, lower Ne estimates) consistent with
 large-scale mortality or migration related to DWH oil. Only one estimate
 of effective population size was reduced in oil-exposed populations and of
 the twenty outlier loci only two were in regions with potential adaptive
 significance (i.e., immune functions). While the toxic effects of oil on
 F. grandis at the organismal level is well established, the minimal
 impacts we detected to populations along the Mississippi coast likely
 reflects the complexity of the northern Gulf of Mexico and DWH oil spill.
 However, we do recognize that the patchiness of oil exposure and low
 genome coverage of the data limit our ability to conclude there were no
 DWH effects on these populations.
description: F_grandis_all_loci.vcfVCF file containing all loci (variant and invariant) and individuals used in analyses. File contains 3,090,808 loci for 141 individuals. Individuals are named by their location of capture (first portion of sample name), and sample names match those in other provided supplements. The following individuals were included in this file, but eliminated from analyses in the study: Horn03:C6LMCANXX:7:000000000 Horn3:C6RJ0ANXX:5:000000000 BSTL51:C6LMCANXX:7:000000000 Pasc115:C7PDKANXX:8:000000000 Cat52:C6RJ0ANXX:5:000000000 Cat54:C6RJ0ANXX:5:000000000 BSTL53:C6LMCANXX:7:000000000 BSTL127:C7PDKANXX:8:000000000
DOI: 10.5061/dryad.58j2m
title: Data from: Movement is the glue connecting home ranges and habitat selection

description: 1. Animal space use has been studied by focusing either on geographic
 (e.g. home ranges, species' distribution) or on environmental (e.g.
 habitat use and selection) space. However, all patterns of space use
 emerge from individual movements, which are the primary means by which
 animals change their environment. 2. Individuals increase their use of a
 given area by adjusting two key movement components: the duration of their
 visit and/or the frequency of revisits. Thus, in spatially heterogeneous
 environments, animals exploit known, high-quality resource areas by
 increasing their residence time (RT) in and/or decreasing their time to
 return (TtoR) to these areas. We expected that spatial variation in these
 two movement properties should lead to observed patterns of space use in
 both geographic and environmental spaces. We derived a set of nine
 predictions linking spatial distribution of movement properties to
 emerging space-use patterns. We predicted that, at a given scale, high
 variation in RT and TtoR among habitats leads to strong habitat selection
 and that long RT and short TtoR result in a small home range size. 3. We
 tested these predictions using moose (Alces alces) GPS tracking data. We
 first modelled the relationship between landscape characteristics and
 movement properties. Then, we investigated how the spatial distribution of
 predicted movement properties (i.e. spatial autocorrelation, mean, and
 variance of RT and TtoR) influences home range size and hierarchical
 habitat selection. 4. In landscapes with high spatial autocorrelation of
 RT and TtoR, a high variation in both RT and TtoR occurred in home ranges.
 As expected, home range location was highly selective in such landscapes
 (i.e. second-order habitat selection); RT was higher and TtoR lower within
 the selected home range than outside, and moose home ranges were small.
 Within home ranges, a higher variation in both RT and TtoR was associated
 with higher selectivity among habitat types (i.e. third-order habitat
 selection). 5. Our findings show how patterns of geographic and
 environmental space use correspond to the two sides of a coin, linked by
 movement responses of individuals to environmental heterogeneity. By
 demonstrating the potential to assess the consequences of altering RT or
 TtoR (e.g. through human disturbance or climatic changes) on home range
 size and habitat selection, our work sets the basis for new theoretical
 and methodological advances in movement ecology
description: compressed data
 folderunzip and read the
 "readme.txt" for instructionsdata.zip
DOI: 10.5061/dryad.2th3266
title: Data from: Persistence of resident and transplanted genotypes of the undomesticated yeast, Saccharomyces paradoxus in forest soil

description: One might expect yeasts in soil to be highly dispersed via water or
 insects, forming ephemeral, genetically heterogeneous populations subject
 to competition and environmental stochasticity. Here, we report
 persistence of genotypes of the yeast Saccharomyces paradoxus in space and
 time. Within 1 km2 in a mixed hardwood forest on scales from centimeters
 to tens of meters, we detect persistence over 3 years of native genotypes,
 identified by SNPs genome-wide, of the wild yeast, Saccharomyces paradoxus
 around Quercus rubra and Q. alba. Yeasts were recovered by enrichment in
 ethanol-containing medium, which measures only presence or absence, not
 abundance. Additional transplantation experiments employed strains marked
 with spontaneous defects in the URA3 gene, which also confer resistance to
 5-Fluoroorotic acid (5FOA). Plating soil suspensions from transplant sites
 on 5FOA medium permitted one-step quantification of yeast colony-forming
 units, with no interference from other unmarked yeasts or microorganisms.
 After an initial steep decrease in abundance, the yeast densities
 fluctuated over time, increasing in association with rainfall and
 decreasing in association with drought. After 18 months, the transplanted
 yeasts remain in place on the nine sites. In vitro transplantation
 experiments into non-sterile soil in petri dishes showed similar patterns
 of persistence and response to moisture and drought. To determine whether
 S. cerevisiae, not previously recovered from soils regionally, can persist
 in our cold-climate sites, we transplanted marked S. cerevisiae alone and
 in mixture with S. paradoxus in fall, 2017. Five months on, S. cerevisiae
 persist to the same extent as S. paradoxus.
description: Variants for all S.
 paradoxus strains listed in Table 1 of the publicationThis .vcf file includes
 only biallelic loci, with no missing data, after filters were applied as
 described in the publication.all_bi-allelic-non-missing.vcf
DOI: 10.15468/a3hjsn
title: A new species and a new record of the genus Rhamphothrips Karny (Thysanoptera, Thripidae) from the Western Ghats, India

description: This dataset contains the digitized treatments in Plazi based on the original journal article Sujith, K. M., Rachana, R. R., Hegde, J. N., Vanitha, K. (2025): A new species and a new record of the genus Rhamphothrips Karny (Thysanoptera, Thripidae) from the Western Ghats, India. Zootaxa 5719 (1): 126-132, DOI: 10.11646/zootaxa.5719.1.7, URL: https://doi.org/10.11646/zootaxa.5719.1.7AbstractRhamphothrips laterocurvidentatus sp. nov., is described based on specimens collected from the leaves of Streblus sp. Rhamphothrips tenuirostris (Karny), originally described from Indonesia, is reported here as a new record for India. An updated key to the nine Rhamphothrips species recorded from India is also provided.
DOI: 10.5061/dryad.5k3j3
title: Data from: High phylogenetic utility of an ultraconserved element probe set designed for Arachnida

description: Arachnida is an ancient, diverse, and ecologically important animal group
 that contains a number of species of interest for medical, agricultural,
 and engineering applications. Despite their importance, many aspects of
 the arachnid tree of life remain unresolved, hindering comparative
 approaches to arachnid biology. Biologists have made considerable efforts
 to resolve the arachnid phylogeny; yet, limited and challenging
 morphological characters, as well as a dearth of genetic resources, have
 hindered progress. Here, we present a genomic toolkit for arachnids
 featuring hundreds of conserved DNA regions (ultraconserved elements or
 UCEs) that allow targeted sequencing of any species in the arachnid tree
 of life. We used recently developed capture probes designed from conserved
 regions of available arachnid genomes to enrich a sample of loci from 32
 diverse arachnids. Sequence capture returned an average of 487 UCE loci
 for all species, with a range from 170 to 722. Phylogenetic analysis of
 these UCEs produced a highly resolved arachnid tree with relationships
 largely consistent with recent transcriptome-based phylogenies. We also
 tested the phylogenetic informativeness of UCE probes within the spider,
 scorpion, and harvestman orders, demonstrating the utility of these
 markers at shallower taxonomic scales, and suggesting that these loci will
 be useful for species-level differences. This probe set will open the door
 to phylogenomic and population genomic studies across the arachnid tree of
 life, enabling systematics, species delimitation, species discovery, and
 conservation of these diverse arthropods.
description: Trinity
 contigsZip file with Trinity
 assemblies for all samples in fasta formatTrinity_assemblies.zipConcatenated mactricesConcatenated matrices in phylip for all data sets used in the study.Concatenated_mactrices.zip
DOI: 10.5061/dryad.vb855
title: Data from: Genome-wide regulatory dynamics of translation in the Plasmodium falciparum asexual blood stages

description: The characterization of the transcriptome and proteome of Plasmodium
 falciparum has been a tremendous resource for the understanding of the
 molecular physiology of this parasite. However, the translational dynamics
 that link steady-state mRNA with protein levels are not well understood.
 In this study, we bridge this disconnect by measuring genome-wide
 translation using ribosome profiling, through five stages of the P.
 falciparum blood phase developmental cycle. Our findings show that
 transcription and translation are tightly coupled, with overt
 translational control occurring for less than 10% of the transcriptome.
 Translationally regulated genes are predominantly associated with
 merozoite egress functions. We systematically define mRNA 5′ leader
 sequences, and 3′ UTRs, as well as antisense transcripts, along with
 ribosome occupancy for each, and establish that accumulation of ribosomes
 on 5′ leaders is a common transcript feature. This work represents the
 highest resolution and broadest portrait of gene expression and
 translation to date for this medically important parasite.
description: Ribosome Profiling read
 coverage plotsRibosome footprint read
 coverage plots (normalized by millions of reads sequenced). mRNA read
 coverage plots (normalized by millions of reads sequenced). Timepoints are
 referred to as 1-5 (Rings, Early Trophs, Late Trophs, Schizont,
 Merozoites, respectively)ribosomeprofilingMOCHIVIEW.cvw
DOI: 10.5061/dryad.41r85
title: Data from: eSnail: a transcriptome-based molecular resource of the central nervous system for terrestrial gastropods

description: To expand on emerging terrestrial gastropod molecular resources, we have
 undertaken transcriptome-based sequencing of the central nervous system
 (CNS) from six ecologically invasive terrestrial gastropods. Focusing on
 snail species Cochlicella acuta and Helix aspersa, and reticulated slugs
 Deroceras invadens, Deroceras reticulatum, Lehmannia nyctelia, and Milax
 gagates, we obtained a total of 367,869,636 high quality reads and
 compared them with existing CNS transcript resources for the invasive
 Mediterranean snail, Theba pisana. In total we obtained, 419,289 unique
 transcripts (unigenes) from 1,410,569 assembled contigs, with BLAST search
 analysis of multiple protein databases leading to the annotation of
 124,268 unigenes, of which 92,544 mapped to NCBI non-redundant protein
 databases. We found that these transcriptomes have representatives in most
 biological functions, based on comparison of gene ontology, KEGG pathway,
 and protein family contents, demonstrating a high range of transcripts
 responsible for regulating metabolic activities and molecular functions
 occurring within the CNS. To provide an accessible genetic resource, we
 also demonstrate the presence of 66,687 microsatellites and 304,693 single
 nucleotide variants, which can be used for the design of potentially
 thousands of unique primers for functional screening. An online ‘eSnail’
 database with a user-friendly web interface was implemented to query all
 the information obtained herein (http://soft.bioinfo-minzhao.org/esnail).
 We demonstrate the usefulness of the database through the mining of
 molluscan neuropeptides. As the most comprehensive CNS transcriptome
 resource for terrestrial gastropods, eSnail may serve as a useful gateway
 for researchers to explore gastropod CNS function for multiple purposes,
 including for the development of biocontrol approaches.
description: eSnail: a
 transcriptome-based molecular resource of the central nervous system for
 terrestrial gastropodsIn the zip file, we
 provided assembled contig files, protein sequences, annotation and single
 nucleotide polymorphism for six terrestrial gastropods: Cochlicella acuta,
 Helix aspersa, Deroceras invadens, Deroceras reticulatum, Lehmannia
 nyctelia, and Milax gagates.esnail.zip
DOI: 10.5061/dryad.7gd5q
title: Data from: Plastic transcriptomes stabilize immunity to pathogen diversity: the jasmonic acid and salicylic acid networks within the Arabidopsis/Botrytis pathosystem

description: To respond to pathogen attack, selection and associated evolution has led
 to the creation of plant immune system that are a highly effective and
 inducible defense system. Central to this system are the plant defense
 hormones jasmonic acid (JA) and salicylic acid (SA) and crosstalk between
 the two, which may play an important role in defense responses to specific
 pathogens or even genotypes. Here, we used the Arabidopsis-B. cinerea
 pathosystem to test how the host's defense system functions against
 genetic variation in a pathogen. We measured defense-related phenotypes
 and transcriptomic responses in Arabidopsis wild-type Col-0 and JA- and
 SA-signaling mutants, coi1-1 and npr1-1, individually challenged with 96
 diverse B. cinerea isolates. Those data showed genetic variation in the
 pathogen influences on all components within the plant defense system at
 the transcriptional level. We identified four gene co-expression networks
 and two vectors of defense variation triggered by genetic variation in B.
 cinerea. This showed that the JA and SA signaling pathways functioned to
 constrain/canalize the range of virulence in the pathogen population, but
 the underlying transcriptomic response was highly plastic. These data
 showed that plants utilize major defense hormone pathways to buffer
 disease resistance, but not the metabolic or transcriptional responses to
 genetic variation within a pathogen.
description: Supplemental Data for
 Zhang et al. (2017). Plant Cell 10.1105/tpc.17.00348. Plastic
 Transcriptomes Stabilize Immunity to Pathogen Diversity: The Jasmonic Acid
 and Salicylic Acid Networks Within the Arabidopsis/Botrytis
 Pathosystem00348-SupplementalDataSets.zip
DOI: 10.34740/kaggle/dsv/14630737
title: Indonesian Hoax News Dataset
DOI: 10.5061/dryad.0hh97
title: Data from: Interacting effects of genetic variation for seed dormancy and flowering time on phenology, life history, and fitness of experimental Arabidopsis thaliana populations over multiple generations in the field

description: • Major alleles for seed dormancy and flowering time are well-studied, and
 can interact to influence seasonal timing and fitness within generations.
 However, little is known about how this interaction controls phenology,
 life history, and population fitness across multiple generations in
 natural seasonal environments. • To examine how seed dormancy and
 flowering time shape annual plant life cycles over multiple generations,
 we established naturally dispersing populations of recombinant inbred
 lines of Arabidopsis thaliana segregating early and late alleles for seed
 dormancy and flowering time in a field experiment. We recorded seasonal
 phenology and fitness of each genotype over two years and several
 generations. • Strong seed dormancy suppressed mid-summer germination in
 both early- and late-flowering genetic backgrounds. Strong dormancy and
 late-flowering genotypes were both necessary to confer a winter annual
 life history; other genotypes were rapid-cycling. Strong dormancy
 increased within-season fecundity in an early-flowering background, but
 decreased it in a late-flowering background. However, there were no
 detectable differences among genotypes in population growth rates. •
 Seasonal phenology, life history, and cohort fitness over multiple
 generations depends strongly upon interacting genetic variation for
 dormancy and flowering. However, similar population growth rates across
 generations suggest that different life cycle genotypes can coexist in
 natural populations.
description: Census
 dataThis text file contains
 the raw juvenile, vegetative adults, and reproductive adults census counts
 for the entire experiment.census_data.txtCodeThis file contains the R code used to visualize and analyze the data.code.rCompetition dataThis text file contains interspecific competition scores for each growth cage.competition_data.txtFecundity dataThis text file contains both individual and cage level fitness data.fecundity.txtMoss scoring guideThis Microsoft Word document provides a guide and examples for non-Arabidopsis growth cover scoring which was used to estimate interspecific competition.moss_scoring_guide.docx
DOI: 10.5061/dryad.r7122
title: Data from: High-throughput monitoring of wild bee diversity and abundance via mitogenomics

description: 1. Bee populations and other pollinators face multiple, synergistically
 acting threats, which have led to population declines, loss of local
 species richness and pollination services, and extinctions. However, our
 understanding of the degree, distribution and causes of declines is
 patchy, in part due to inadequate monitoring systems, with the challenge
 of taxonomic identification posing a major logistical barrier. Pollinator
 conservation would benefit from a high-throughput identification pipeline.
 2. We show that the metagenomic mining and resequencing of mitochondrial
 genomes (mitogenomics) can be applied successfully to bulk samples of wild
 bees. We assembled the mitogenomes of 48 UK bee species and then
 shotgun-sequenced total DNA extracted from 204 whole bees that had been
 collected in 10 pan-trap samples from farms in England and been identified
 morphologically to 33 species. Each sample data set was mapped against the
 48 reference mitogenomes. 3. The morphological and mitogenomic data sets
 were highly congruent. Out of 63 total species detections in the
 morphological data set, the mitogenomic data set made 59 correct
 detections (93·7% detection rate) and detected six more species (putative
 false positives). Direct inspection and an analysis with species-specific
 primers suggested that these putative false positives were most likely due
 to incorrect morphological IDs. Read frequency significantly predicted
 species biomass frequency (R2 = 24·9%). Species lists, biomass
 frequencies, extrapolated species richness and community structure were
 recovered with less error than in a metabarcoding pipeline. 4.
 Mitogenomics automates the onerous task of taxonomic identification, even
 for cryptic species, allowing the tracking of changes in species richness
 and distributions. A mitogenomic pipeline should thus be able to contain
 costs, maintain consistently high-quality data over long time series,
 incorporate retrospective taxonomic revisions and provide an auditable
 evidence trail. Mitogenomic data sets also provide estimates of species
 counts within samples and thus have potential for tracking population
 trajectories.
description: Mitogenome
 assembliesFile
 'UKbees_mitogenomes_of_48_species_20150529.gb' (GenBank format)
 contains the mitochondrial assemblies of the 48 bee
 species.Metabarcoding
 dataThis dataset includes
 the post-denoising (BLUE) and post-merging (FLASH) sequence data, the map
 files for library splitting, the merged *.fna file for all sequences from
 all samples, the representative sequence of each OTU, and the command
 files.