cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/113c6cf5dd923cdb6e85c5956885db6f
title: PBG03 Disk pasture meter measurements to estimate plant standing biomass in the Patch-Burn Grazing experiment at Konza Prairie

description: "PBG" datasets are associated with a long-term, large-scale study that is addressing the effects of fire-grazing interactions in the context of a Patch-Burn Grazing management system designed to promote grassland heterogeneity. Effects of patch-burn grazing management on plant and animal diversity and the nature and variety of wildlife habitat are being assessed in two replicate management units, each consisting of three pastures (watersheds) designated C03A/C03B/C03C and C3SA/C3SB/C3SC. In each patch-burn grazing unit, one watershed is burned and two that are left unburned in a given year. The burning treatments are rotated annually so that each pasture is burned every third year. Each patch-burn grazing unit is paired with an annually-burned pasture for comparison with traditional grazing systems (C01A and C1SB). All grazing units are stocked with cow/calf pairs from approximately 1 May until 1 Oct at a stocking density equal to 3.2 ha per cow/calf. To examine the impact of patch burning and grazing in all 8 units, we monitor changes in plant species composition, residual biomass, grassland bird populations, insect populations, small mammal populations, soil nutrients, and stream water quality1 (1C3SA/C3SB/C3SC unit only). The KSU Department of Animal Science monitors cattle performance, including weight gain and body condition to assess the economic feasibility of using patch-burn management on a widespread basis. This dataset includes both the annual calibration data for the disk pasture meter measurements (PBG031) and the actual disk pasture meter measurements in the PBG experiment (PBG032). Measurements were taken at a total of 64 transects (8 watersheds x 4 sites per watershed x 2 pasture meter transects per site). Each cattle-grazed watershed (designated as of May 2011 C3A, C3B, C3C, and C1A) and the four Shane cattle-grazed watersheds (C1B, C3SA, C3SB, and C3SC) includes 4 plant composition sampling transects (A-D). Pasture meter measurements were taken along two transects adjacent and parallel to the plant composition transects in each of these watersheds. Standing biomass samples for pasture meter calibration were also collected near the plant composition transects in the same 8 watersheds.
DOI: 10.6073/pasta/9995c01a838c58c579d173d7bb8ae756
title: PBG08 Grasshopper density survey in the Patch-Burn Grazing experiment at Konza Prairie

description: PBG datasets are associated with a long-term, large-scale study that is addressing the effects of fire-grazing interactions in the context of a Patch-Burn Grazing management system designed to promote grassland heterogeneity. Effects of patch-burn grazing management on plant and animal diversity and the nature and variety of wildlife habitat are being assessed in two replicate management units, each consisting of three pastures (watersheds) designated C03A/C03B/C03C and C3SA/C3SB/C3SC. In each patch-burn grazing unit, one watershed is burned and two that are left unburned in a given year. The burning treatments are rotated annually so that each pasture is burned every third year. Each patch-burn grazing unit is paired with an annually-burned pasture for comparison with traditional grazing systems (C01A and C1SB). All grazing units are stocked with cow/calf pairs from approximately 1 May until 1 Oct at a stocking density equal to 3.2 ha per cow/calf. To examine the impact of patch burning and grazing in all 8 units, we monitor changes in plant species composition, residual biomass, grassland bird populations, insect populations, small mammal populations, soil nutrients, and stream water quality1 (1C3SA/C3SB/C3SC unit only). The KSU Department of Animal Science monitors cattle performance, including weight gain and body condition to assess the economic feasibility of using patch-burn management on a widespread basis. This data set focuses on measuring grasshopper density using ring count method (Onsager 1977*) at watersheds C03A, C03B, C03C, C01A, C3SA, C3SB, C3SC, and C01B. Grazing intensity is estimated (Joern 2005) at each site at time of density measurements to model how grasshopper populations respond to grazing.
DOI: 10.34740/kaggle/dsv/1933092
title: Country Data
DOI: 10.15139/s3/nfwpyj
title: Data and Codes for Spatial Interpolation of Rainfall Surfaces with an Ensemble Deep Learning Approach

description: Data and code files
DOI: 10.5281/zenodo.4516657
title: Input Files for Translocation of Amphiphilic Peptides Across Membranes Enhanced by Transmembrane Proteins

description: Input files for publication: Ladislav Bartoš, Ivo Kabelka, and Robert Vácha: Enhanced Translocation of Amphiphilic Peptides Across Membranes by Transmembrane Proteins, Biophysical Journal
DOI: 10.5281/zenodo.4516656
title: Input Files for Translocation of Amphiphilic Peptides Across Membranes Enhanced by Transmembrane Proteins

description: Input files for publication: Ladislav Bartoš, Ivo Kabelka, and Robert Vácha: Enhanced Translocation of Amphiphilic Peptides Across Membranes by Transmembrane Proteins, Biophysical Journal
DOI: 10.17632/36y25cbbx8.3
title: Distribution Network Design for Syrian Refugees in Kilis Optimising cost and reach: parameters and solutions

description: These data sets are prepared and used within a humanitarian operations project entitled "Innovating the Turkish supply chain for services in humanitarian aid". The initial data set includes the GIS coordination and population information of a central depot (Municipality building), 18 potential service points (2 hospitals, 1 Red Crescent office, and 15 schools) together with 187 (109 villages and 78 neighbourhoods) main locations where Syrian refugees inhabit in the Kilis province in southern Turkey. Locations are classified as Villages (Köy) and Neighbourhoods (Mahalle) based on administrative divisions of Turkey. A matrix of pair-wise distances (in Km) among the identified locations is provided accordingly. The population of each identified demand location, which is obtained from the local government in 2018, is provided as well. Two additional data sets, given in zip files, are representing the supplementary data for an academic paper submitted to EJOR during the above-mentioned project. The first zip file provides parameters and solutions of 505 instances corresponding to different capacity configurations of E-voucher distribution network for Syrian refugees in Kilis. The second zip file, provides some relatively small dummy instances, created from TSPLIB networks, for algorithm evaluation and benchmark purpose. A ‘README’ file is given in each of them explaining the details of parameter files and layout of the data to enable OR practitioners to solve the same instances by alternative approaches for comparison and assessment purposes.
DOI: 10.17632/n5dn4xzg7j.1
title: Spatial mapping of SARS-CoV-2 and H1N1 Lung Injury Identifies Differential Transcriptional Signatures

description: Here, we analyzed specific ARDS regions (lower left lung lobe) of interest utilizing a new spatial transcriptomic platform (Nanostring GeoMx) on autopsy-derived lung tissue from patients with SARS-CoV-2 (n=3), H1N1 (n=3), and a unique dual- infected individual (n=1). Paraffin embedded tissues were processed and analyzed at NanoString techonology laboratories using a combination of fluorescently labeled antibodies, anti-CD68 (Santa Cruz, sc-20060 AF647, RRID: KP1), anti-EpCAM (Abcam, ab213500, RRID:EPR20532-222), anti-smooth muscle actin (Invitrogen, 53-9760-82, RRID:1A4) and the GeoMX COVID-19 Immune Response Atlas gene set with custom probe set specific for SARS-CoV-2 lung infection and tissue responses. Selection of regions of interests (ROI, 12 per patient) was performed based on the immunofluorescent viral staining, the cellular immunofluorescent profile and the pathological features of ARDS (i.e. presence of hyaline membranes and diffused alveolar damage) observed in the H&E stained sections. To ensure even and representative selection of ROIs, only patients lower left lung tissue was analyzed. Each patient had 2-3 total lung areas selected in regions of ARDS (confirmed by Dr. Benson, pathologist), 2-4 ROIs for epithelial cells (normal epithelium vs hyperplastic), 2-3 vascular beds selected, and 2-4 macrophage populations (infiltrate and clusters). For cell-specific profiling, at least 50 cells per ROI were utilized for analyses. The 1860 gene profile not only identified increased regional coagulopathy, but also robust transcriptional signatures of enhanced extracellular remodeling, alternative macrophage activation, and squamous metaplasia of type II pneumocytes in SARS- CoV-2. These gene signatures were expressed and enhanced in alveolar epithelium, vascular tissue, and lung macrophages. Both the H1N1 and dual infected transcriptome demonstrated an enhanced antiviral response compared to SARS-CoV-2.
DOI: 10.17632/c6t2v3ktsd.1
title: Engaged Communication Research

description: Journal articles from NCA journals including "engaged communication research" and/or "engaged communication scholarship"
DOI: 10.17632/8v5ssychvk.1
title: Automatic Code Generation Systematic Literature Review

description: Systematic literature review of automatic code generation approaches based or not in Model-Driven Architecture and Unified Modelling Language which consider a user task model.
DOI: 10.17632/2ghxnrkr9p.4
title: COVID-19 in Europe at NUTS3 level

description: To aid the evaluation of the determinants and impact of the COVID-19 pandemic at a large scale, we present here a new dataset with socio-demographic, economic, public policy, health, pollution and environmental factors for the European Union at the small regions level (NUTS3). This dataset can help to monitor the COVID-19 mortality and infections at the sub-national level and enable analysis that may inform future policymaking.
DOI: 10.17632/wwkpzj3vfk.4
title: Inks of gelatin-alginate-hyaluronic acid for 3D printing: effects of bioglass 45S5 addition on printability, rheology and on scaffold tensile modulus

description: In this work, we studied the printability, mechanical and rheological properties of gelatin-alginate-hyaluronic acid inks with different concentrations of a bioactive glass, 45S5 bioglass (BG), from 2 to 8 % w/w respect to polymer powders. Inks depicted a pseudoplastic behavior with thermo-responsive gelation point of gelatin at 25°C (see processed rheometer data in "Rheology data" folder, please use SciDAVis software for .sciprj files), leading to self-supported structures during 3D printing. Addition of BG reduced storage modulus of the inks, evidencing more viscous behavior probably caused by the microparticles that disrupt the polymeric network. Higher concentrations of BG (above 6 %) led to a reduction of inks viscosity (see "Rheology data" &gt; "Inks Viscosity.xlsx"). Inks without BG evidenced good printing fidelity (Pr=0.91±0.06, evaluated using the "Ractangle Grid 10% infill for printability.gcode") slightly decreasing with up to 2 % BG concentration (see "Printability assay" files). Mechanical characterization of crosslinked scaffolds with CaCl2, evidenced tensile modules of ~0.13 MPa, similar to skin tissue, and increased to ~0.16 MPa after addition of 6-8% BG (see "Tensile moduculus assay" file, please use SciDAVis software). Fibroblast cells (NIH/3T3) attached and grew on the surface of the scaffolds (3D printed using "Cube 2cm 3mm.gcode"), revealing cytocompatibility of final products for all the scaffolds (see "Cell attachment assay" files). Moreover, scaffolds containing BG 6% and 8% w/w presented a hydroxyapatite layer (see EDS assay.xlsx).
DOI: 10.17632/ty3yssnfd8.1
title: CD41 and pediatric bone marrow biopsies

description: The purpose of this study was to evaluate the ability of CD61, CD41, CD42a, CD42b and CD42c to stain megakaryocytes and micromegakaryocytes in BMBs from patientes aged 0-18 years diagnosed with MDS or non-neoplastic cytopenia, and their correlation with staining rate, age, and sensitivity and specificity for micromegakaryocytes.
DOI: 10.6084/m9.figshare.12197928.v1
title: Software Engineering Applications enabled by Blockchain Technology: A Systematic Mapping Study

description: The novel, yet disruptive blockchain technology has witnessed growing attention lately, due to its intrinsic potential. Besides the conventional domains that make use of such a potential such as finance, supply chain or healthcare, blockchain use cases in software engineering have emerged recently. In order to get a quantitative and qualitative overview of the state-of-art of blockchain uses for software engineering, we conducted a systematic mapping study that relies on the grounded guidelines for systematic mappings in software engineering. We identified 22 primary studies and extracted data within the research type, research topic and contribution type facets. Findings suggest an increasing trend of studies since 2018. Additionally, findings revealed the potential of using blockchain technologies to replace centralized systems such as GitHub, Travis CI and personal trust networks for packages verification, and to automate a variety of software engineering activities such as the acceptance phase, payment to developers, compliance adherence and software quality measurement. We suggest researchers to implement and evaluate their proposals in real-life scenarios and to carry out security and performance analysis of such proposals.
DOI: 10.6084/m9.figshare.12197928.v2
title: Software Engineering Applications enabled by Blockchain Technology: A Systematic Mapping Study

description: The novel, yet disruptive blockchain technology has witnessed growing attention lately, due to its intrinsic potential. Besides the conventional domains that make use of such a potential such as finance, supply chain or healthcare, blockchain use cases in software engineering have emerged recently. In order to get a quantitative and qualitative overview of the state-of-art of blockchain uses for software engineering, we conducted a systematic mapping study that relies on the grounded guidelines for systematic mappings in software engineering. We identified 22 primary studies and extracted data within the research type, research topic and contribution type facets. Findings suggest an increasing trend of studies since 2018. Additionally, findings revealed the potential of using blockchain technologies to replace centralized systems such as GitHub, Travis CI and personal trust networks for packages verification, and to automate a variety of software engineering activities such as the acceptance phase, payment to developers, compliance adherence and software quality measurement. We suggest researchers to implement and evaluate their proposals in real-life scenarios and to carry out security and performance analysis of such proposals.
DOI: 10.5519/qd.nc9aj9lu
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (751712 records)
DOI: 10.25345/c55b8j
title: MassIVE MSV000086843 - 021121_Dictyota_auto MS/MS_newdata
title: auto ms-ms data from 021021. excluded 718. try network again to see if get better network from this data.
DOI: 10.25345/c51n58
title: MassIVE MSV000086844 - Energy-limited proteome of the methanogen Methanococcus maripaludis
title: This dataset describes the proteome response of Methanococcus maripaludis to a formate (energy) limitation when grown in a chemostat. Samples contain both 14N and 15N-labeled peptides, where the 15N reference was generated from a combination of exponential batch culture and a batch stationary phase culture.
DOI: 10.6084/m9.figshare.13925933.v1
title: lambda_0.7.zip

description: The downsampled dynamic rupture models of the Japan trench, with the pore pressure ratio lambda = 0.7
DOI: 10.6084/m9.figshare.13925933
title: lambda_0.7.zip

description: The downsampled dynamic rupture models of the Japan trench, with the pore pressure ratio lambda = 0.7
DOI: 10.6084/m9.figshare.13926728.v1
title: Model_info.zip

description: The basic information such as friction, stress and velocity structures of the dynamic rupture simulation
DOI: 10.6084/m9.figshare.13926245
title: lambda_0.9.zip

description: Down-sampled dynamic rupture models of the Japan trench, with pore pressure ratio lambda = 0.9
DOI: 10.6084/m9.figshare.13926245.v1
title: lambda_0.9.zip

description: Down-sampled dynamic rupture models of the Japan trench, with pore pressure ratio lambda = 0.9
DOI: 10.6084/m9.figshare.13926728
title: Model_info.zip

description: The basic information such as friction, stress and velocity structures of the dynamic rupture simulation
DOI: 10.5281/zenodo.4536542
title: Hypsithocus hudsonae no-choice oviposition: Raw data and images

description: This archive contains: 1. Raw data from no-choice oviposition experiments conducted with Trissolcus japonicus Ashmead (Scelionidae: Hymenoptera) and Hypsithocus hudsonae Bergroth (Pentatomidae: Hemiptera). Trissolcus japonicus is a biological control agent approved for release in New Zealand should brown marmorated stink bug, Halyomorpha halys Stål, establish here. Hypsithocus hudsonae is an endemic alpine shield bug, restricted to a handful of sites in the Otago and Southland regions in the South Island of New Zealand. It also contains a sheet where the data from this work is combined with data from the following paper: Charles JG, Avila GA, Hoelmer KA, et al (2019) Experimental assessment of the biosafety of Trissolcus japonicus in New Zealand, prior to the anticipated arrival of the invasive pest Halyomorpha halys. BioControl 64:367–379. https://doi.org/10/ggrtkp 2. Images of Hypsithocus hudsonae eggs, nymphs, and adults.
DOI: 10.6084/m9.figshare.13928300
title: Health+Perceptions+of+CBD+Marketing+-+Main+Data+Collection_December+4,+2020_16.18.sav

description: Data set CBD marketing.
DOI: 10.6084/m9.figshare.3761562.v1772
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.25345/c5wz20
title: MassIVE MSV000086845 - Skeletal Muscle phospho submission TMT
title: mztab and mgf files to upload to upload global data to massive
DOI: 10.6073/pasta/9c641b35695abc5889edd64c3950517f
title: CBH01 Konza Prairie bison herd information

description: The purpose of this study is to monitor long-term changes in individual animal mass. The datasets include an annual summary of the bison herd structure, end-of-season weights of individual animals, and maternal parentage of individual bison.
DOI: 10.25345/c5nf7j
title: MassIVE MSV000086847 - Skeletal Muscle Metabolism of the Astyanax mexicanus
title: The muscle composition of cave dwelling and surface fish was analyzed by proteomics. Specifically, the composition of the myosin heavy chain was determined by in-gel digestion followed by reversed phase LC-MS/MS. The proteome of the different muscle types was analyzed by tandem mass tags and phosphorylation differences were determined by enriching for the modification.
DOI: 10.25345/c5hn5m
title: MassIVE MSV000086848 - 021121_Laurencia_auto MS/MS_newdata
title: acquired new auto ms-ms data set excluding 718 to try to get a better network
DOI: 10.25345/c5850q
title: MassIVE MSV000086850 - 021021_Laurencia_auto MS/MS_test1_attempt2
title: second attempt at depositing laurencia data set from qtof 021021 - auto-ms/ms excluding 718. see if can make a better network
DOI: 10.6084/m9.figshare.13370504.v10
title: Speedtest Open Data - Australia 2020 Q2, Q3, Q4 extract

description: This is an Australian extract of Speedtest Open data available at Amazon WS (link below - opendata.aws).<br>AWS data licence is "CC BY-NC-SA 4.0", so use of this data must be:- non-commercial (NC)- reuse must be share-alike (SA)(add same licence).This restricts the standard CC-BY Figshare licence.<br>A world speedtest open data was dowloaded (&gt;400Mb, 7M lines of data). An extract of Australia's location (lat, long) revealed 88,000 lines of data (attached as csv).<br>A Jupyter notebook of extract process is attached.A link to Twitter thread of outputs provided.A link to Data tutorial provided (GitHub), including Jupyter Notebook to analyse World Speedtest data, selecting one US State.<br>Data Shows: (Q2)- 3.1M speedtests- 762,000 devices- 88,000 grid locations (600m * 600m), summarised as a point- average speed 33.7Mbps (down), 12.4M (up)- Max speed 724Mbps- data is for 600m * 600m grids, showing average speed up/down, number of tests, and number of users (IP). Added centroid, and now lat/long.<br>See tweet of image of centroids also attached.<br>Versions:v10 - Load AURIN sample pics. Speedtest data loaded to AURIN geo-analytic platform; requires edu.au login.v9 - Add comparative Q2, Q3, Q4 Hist pic.v8 - Added Q4 data geojson. Add Q3, Q4 Hist pic.v7 - Rename to include Q2, Q3 in Title.v6 - Add Q3 20 data. Rename geojson AUS data as Q2. Add comparative Histogram. Calc in International.ipynb.v5 - add Jupyter Notebook inc Histograms. Hist is count of geo-locations avg download speed (unweighted by tests).v4 - added Melb choropleth (png 50Mpix) inc legend. (To do - add Melb.geojson). Posted Link to AURIN description of Speedtest data.v3 - Add super fast data (&gt;100Mbps) less than 1% of data - 697 lines. Includes png of superfast.plot(). Link below to Google Maps version of superfast data points. Also Google map of first 100 data points - sample data. Geojson format for loading into GeoPandas, per Jupyter Notebook. New version of Jupyter Notebook, v.1.1.v2 - add centroids image.v1 - initial data load.<br>** Future Work- combine Speedtest data with NBN Technology by location data (national map.gov.au); https://www.data.gov.au/dataset/national-broadband-network-connections-by-technology-type- combine Speedtest data with SEIFA data - socioeconomic categories - to discuss with AURIN.- Further international comparisons- discussed collaboration with Assoc Prof Tooran Alizadeh, USyd.
DOI: 10.3886/e113992v1-79000
title: Replication data for: Social Media and Fake News in the 2016 Election

description: Following the 2016 US presidential election, many have expressed concern about the effects of false stories ("fake news"), circulated largely through social media. We discuss the economics of fake news and present new data on its consumption prior to the election. Drawing on web browsing data, archives of fact-checking websites, and results from a new online survey, we find: 1) social media was an important but not dominant source of election news, with 14 percent of Americans calling social media their "most important" source; 2) of the known false news stories that appeared in the three months before the election, those favoring Trump were shared a total of 30 million times on Facebook, while those favoring Clinton were shared 8 million times; 3) the average American adult saw on the order of one or perhaps several fake news stories in the months around the election, with just over half of those who recalled seeing them believing them; and 4) people are much more likely to believe stories that favor their preferred candidate, especially if they have ideologically segregated social media networks.