cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5687887
title: The similar to RCD-one 1 protein SRO1 interacts with GPX3 and functions in plant tolerance of mercury stress

description: Heavy metals in the environment are one of the major limiting factors affecting plant growth and development. However, the mechanisms of the heavy metal-induced physiological processes remain to be fully dissected. Here, we explored that SRO1 can physically interact with Glutathione Peroxidase 3 (GPX3) in <i>Arabidopsis</i>. Under Hg treatment, similar to the <i>sro1</i>, the growth of the <i>gpx3/sro1</i> was repressed more seriously and the number of true leaves was more reduced and etiolated than that of the wild type and <i>gpx3</i> plants. The electrolyte leakage rates showed that cell membrane integrity in <i>gpx3/sro1</i> was damaged more severely than in the wild type and <i>gpx3</i> mutant. The Real-time PCR results have shown that the expression of the <i>APX1</i> and <i>CAT3</i> was reduced under mercury stress in the <i>sro1</i> and <i>sro1/gpx3</i>. Our results suggested that the combination of the SRO1 and GPX3 may be contributed to plant response to mercury stress by regulating ROS intracellular oxidative homeostasis. The combination of the SRO1 and GPX3 has an important effect on plant tolerance of mercury stress.
DOI: 10.6084/m9.figshare.5687887.v1
title: The similar to RCD-one 1 protein SRO1 interacts with GPX3 and functions in plant tolerance of mercury stress

description: Heavy metals in the environment are one of the major limiting factors affecting plant growth and development. However, the mechanisms of the heavy metal-induced physiological processes remain to be fully dissected. Here, we explored that SRO1 can physically interact with Glutathione Peroxidase 3 (GPX3) in <i>Arabidopsis</i>. Under Hg treatment, similar to the <i>sro1</i>, the growth of the <i>gpx3/sro1</i> was repressed more seriously and the number of true leaves was more reduced and etiolated than that of the wild type and <i>gpx3</i> plants. The electrolyte leakage rates showed that cell membrane integrity in <i>gpx3/sro1</i> was damaged more severely than in the wild type and <i>gpx3</i> mutant. The Real-time PCR results have shown that the expression of the <i>APX1</i> and <i>CAT3</i> was reduced under mercury stress in the <i>sro1</i> and <i>sro1/gpx3</i>. Our results suggested that the combination of the SRO1 and GPX3 may be contributed to plant response to mercury stress by regulating ROS intracellular oxidative homeostasis. The combination of the SRO1 and GPX3 has an important effect on plant tolerance of mercury stress.
DOI: 10.6084/m9.figshare.5687866
title: The origin of variable-δ<sup>18</sup>O zircons in Jurassic and Cretaceous Mo-bearing granitoids in the eastern Xing–Meng Orogenic Belt, Northeast China

description: This study reports new zircon U–Pb ages, Lu–Hf isotope data, and oxygen isotope data for Mesozoic Mo-bearing granitoids in the eastern Xing–Meng Orogenic Belt (XMOB) of Northeast China, within the eastern Central Asian Orogenic Belt. Combining these new laser ablation-inductively coupled plasma-mass spectrometry (LA-ICP-MS) zircon U–Pb ages with the results of previous research indicates that two stages of Mo-bearing granitoid magmatism occurred in the eastern XMOB, during the Early–Middle Jurassic (200–165 Ma) and the Early Cretaceous (ca. 111 Ma). The eastern XMOB also contains Mo-bearing granitoids with variable δ<sup>18</sup>O compositions that record variations in source oxygen isotopic compositions. Combining δ<sup>18</sup>O data with zircon U–Pb and Hf isotopic data provides evidence of the origin of these granitoids. Three types of zircon have been identified within these granitoids. Type 1 zircons formed during the Mesozoic and having high δ<sup>18</sup>O values (5.71–7.05‰) that are consistent with the compositions of magmatic zircons from the Luming, Jiapigou, and Kanchuangou areas. These zircons suggest that the Mo-bearing granitoids were derived from a source containing supracrustal materials. The type 2 zircons have extremely low and heterogeneous δ<sup>18</sup>O values (4.64–4.89‰) that are consistent with the compositions of magmatic zircons from the Jidetun and Fuanpu areas. These magmas were generated by the remelting of juvenile crustal material that was previously significantly modified by interaction with fluids. Type 3 zircons generally have mantle-like δ<sup>18</sup>O values (5.42–5.57‰), with several zircons yielding higher δ<sup>18</sup>O values, suggesting that these intrusions formed from mantle-derived magmas that assimilated and were metasomatized by crustal material. Combining these geochemical data with the geology of this region indicates that the Mo-bearing granitoids were generated as a result of subduction of the Palaeo-Pacific Plate beneath the Eurasian continent.
DOI: 10.6084/m9.figshare.5687866.v1
title: The origin of variable-δ<sup>18</sup>O zircons in Jurassic and Cretaceous Mo-bearing granitoids in the eastern Xing–Meng Orogenic Belt, Northeast China

description: This study reports new zircon U–Pb ages, Lu–Hf isotope data, and oxygen isotope data for Mesozoic Mo-bearing granitoids in the eastern Xing–Meng Orogenic Belt (XMOB) of Northeast China, within the eastern Central Asian Orogenic Belt. Combining these new laser ablation-inductively coupled plasma-mass spectrometry (LA-ICP-MS) zircon U–Pb ages with the results of previous research indicates that two stages of Mo-bearing granitoid magmatism occurred in the eastern XMOB, during the Early–Middle Jurassic (200–165 Ma) and the Early Cretaceous (ca. 111 Ma). The eastern XMOB also contains Mo-bearing granitoids with variable δ<sup>18</sup>O compositions that record variations in source oxygen isotopic compositions. Combining δ<sup>18</sup>O data with zircon U–Pb and Hf isotopic data provides evidence of the origin of these granitoids. Three types of zircon have been identified within these granitoids. Type 1 zircons formed during the Mesozoic and having high δ<sup>18</sup>O values (5.71–7.05‰) that are consistent with the compositions of magmatic zircons from the Luming, Jiapigou, and Kanchuangou areas. These zircons suggest that the Mo-bearing granitoids were derived from a source containing supracrustal materials. The type 2 zircons have extremely low and heterogeneous δ<sup>18</sup>O values (4.64–4.89‰) that are consistent with the compositions of magmatic zircons from the Jidetun and Fuanpu areas. These magmas were generated by the remelting of juvenile crustal material that was previously significantly modified by interaction with fluids. Type 3 zircons generally have mantle-like δ<sup>18</sup>O values (5.42–5.57‰), with several zircons yielding higher δ<sup>18</sup>O values, suggesting that these intrusions formed from mantle-derived magmas that assimilated and were metasomatized by crustal material. Combining these geochemical data with the geology of this region indicates that the Mo-bearing granitoids were generated as a result of subduction of the Palaeo-Pacific Plate beneath the Eurasian continent.
DOI: 10.6084/m9.figshare.5687845
title: GN.xlsx file containing all the original data from Repartitioning of glycerol between levitated and surrounding deposited glycerol/NaNO<sub>3</sub>/H<sub>2</sub>O droplets

description: GN.xlsx file contains all the original data described in “Repartitioning of Glycerol between Levitated and Surrounding Deposited Glycerol/NaNO3/H2O droplets”. It contains totally 3 sheets. Sheet1 The original data for figure 2, the Cavity enhanced Raman spectra (CERS) of Glycerol/NaNO3/H2O droplets with organic to inorganic molar ratio (OIR) of 1:1 at 56.8% and 45.3% relative humidity (RH). Sheet2 The original data for figure 3, the wavelength positions of CERS of Glycerol/NaNO3/H2O droplets and the corresponding RHs at different time for the OIR of 3:1, 1:1 and 1:3. Sheet3 The original data for figure 5, the wavelength positions of CERS of Glycerol/NaNO3/H2O droplet and the corresponding RHs at different time for the OIR of 1:1 with constant RH at 5% about 30000 s and then up to 74% RH.
DOI: 10.6084/m9.figshare.5687836
title: Alternate wetting and drying reduces methane emission from a rice paddy in Central Java, Indonesia without yield loss

description: Water regimes play a central role in regulating methane (CH<sub>4</sub>) and nitrous oxide (N<sub>2</sub>O) emissions from irrigated rice field. Alternate wetting and drying (AWD) is a possible option, but there is limited information on its feasibility under local environmental conditions, especially for tropical region. We therefore carried out a 3-year experiment in a paddy field in Central Java, Indonesia to investigate the feasibility of AWD in terms of rice productivity, greenhouse gas (GHG) emission, and water use both in wet and dry seasons (WS and DS). The treatments of water management were (1) continuous flooding (CF), (2) flooding every when surface water level naturally declines to 15 cm below the soil surface (AWD), and (3) site-specific AWD with different criteria of soil drying (AWDS) established to find out the optimum for GHG emission reduction. Gas flux measurement was conducted by a static closed chamber method. Rice growth was generally normal and the grain yield did not significantly differ among the three treatments both in WS and DS. AWD and AWDS significantly reduced the total water use (irrigation + rainfall) as compared to CF. As expected, the seasonal total CH<sub>4</sub> emission was significantly reduced by AWD and AWDS. On average, the CH<sub>4</sub> emissions under AWD and AWDS were 35 and 38%, respectively, smaller than those under CF. It should be noted that AWD and AWDS were effective even in WS due partly to the field location on inland, upland area that facilitates the drainage. The seasonal total N<sub>2</sub>O emission did not significantly differ among the treatments. The results indicate that AWD is a promising option to reduce GHG emission, as well as water use without sacrificing rice productivity in this field.
DOI: 10.6084/m9.figshare.5687836.v1
title: Alternate wetting and drying reduces methane emission from a rice paddy in Central Java, Indonesia without yield loss

description: Water regimes play a central role in regulating methane (CH<sub>4</sub>) and nitrous oxide (N<sub>2</sub>O) emissions from irrigated rice field. Alternate wetting and drying (AWD) is a possible option, but there is limited information on its feasibility under local environmental conditions, especially for tropical region. We therefore carried out a 3-year experiment in a paddy field in Central Java, Indonesia to investigate the feasibility of AWD in terms of rice productivity, greenhouse gas (GHG) emission, and water use both in wet and dry seasons (WS and DS). The treatments of water management were (1) continuous flooding (CF), (2) flooding every when surface water level naturally declines to 15 cm below the soil surface (AWD), and (3) site-specific AWD with different criteria of soil drying (AWDS) established to find out the optimum for GHG emission reduction. Gas flux measurement was conducted by a static closed chamber method. Rice growth was generally normal and the grain yield did not significantly differ among the three treatments both in WS and DS. AWD and AWDS significantly reduced the total water use (irrigation + rainfall) as compared to CF. As expected, the seasonal total CH<sub>4</sub> emission was significantly reduced by AWD and AWDS. On average, the CH<sub>4</sub> emissions under AWD and AWDS were 35 and 38%, respectively, smaller than those under CF. It should be noted that AWD and AWDS were effective even in WS due partly to the field location on inland, upland area that facilitates the drainage. The seasonal total N<sub>2</sub>O emission did not significantly differ among the treatments. The results indicate that AWD is a promising option to reduce GHG emission, as well as water use without sacrificing rice productivity in this field.
DOI: 10.6084/m9.figshare.5687833
title: Quantification of regional aerosol deposition patterns as a function of aerodynamic particle size in rhesus macaques using PET/CT imaging

description: Aerosol aerodynamic particle size is known to affect deposition patterns of inhaled aerosol particles, as well as the virulence of inhaled bioaerosol particles. While a significant amount of work has been performed to describe the deposition of aerosol particles in the human respiratory tract, only a limited amount of work has been performed to describe the deposition of aerosol particles in the respiratory tract of nonhuman primates, an animal model commonly utilized in pharmacological and toxicological studies, especially in the biodefense field. In this study, anesthetized rhesus macaques inhaled radiolabeled aerosols with MMADs of 1.7, 3.6, 7.4 and 11.8 µm to characterize regional deposition patterns. The results demonstrate that the regional deposition pattern shifts as particle size increases, with greater deposition in more proximal regions of the respiratory tract and decreased deposition in the pulmonary region. The results of this study extend the findings of previous studies which demonstrated a similar shift in the deposition pattern as a function of particle size by providing greater resolution of deposition patterns. These data on regional deposition patterns provide a starting point to begin to explore potential mechanisms responsible for the differences in virulence of infectious bioaerosols as a function of particle size and deposition pattern reported in previous studies. Additionally, the data are useful to assess the performance of various deposition models that have been published in the literature.
DOI: 10.6084/m9.figshare.5687833.v1
title: Quantification of regional aerosol deposition patterns as a function of aerodynamic particle size in rhesus macaques using PET/CT imaging

description: Aerosol aerodynamic particle size is known to affect deposition patterns of inhaled aerosol particles, as well as the virulence of inhaled bioaerosol particles. While a significant amount of work has been performed to describe the deposition of aerosol particles in the human respiratory tract, only a limited amount of work has been performed to describe the deposition of aerosol particles in the respiratory tract of nonhuman primates, an animal model commonly utilized in pharmacological and toxicological studies, especially in the biodefense field. In this study, anesthetized rhesus macaques inhaled radiolabeled aerosols with MMADs of 1.7, 3.6, 7.4 and 11.8 µm to characterize regional deposition patterns. The results demonstrate that the regional deposition pattern shifts as particle size increases, with greater deposition in more proximal regions of the respiratory tract and decreased deposition in the pulmonary region. The results of this study extend the findings of previous studies which demonstrated a similar shift in the deposition pattern as a function of particle size by providing greater resolution of deposition patterns. These data on regional deposition patterns provide a starting point to begin to explore potential mechanisms responsible for the differences in virulence of infectious bioaerosols as a function of particle size and deposition pattern reported in previous studies. Additionally, the data are useful to assess the performance of various deposition models that have been published in the literature.
DOI: 10.6084/m9.figshare.5687830
title: The influence of color on the consumer's experience of beer

description: This fileset provides the supplementary materials to the following article: <br>Reinoso Carvalho F, Moors P, Wagemans J and Spence C (2017) The Influence of Color on the Consumer’s Experience of Beer. Front. Psychol. 8:2205. doi: 10.3389/fpsyg.2017.02205<br>It contains an HTML and PDF file of the code used to analyze the data and create the figures reported in the manuscript. In addition, some additional analyses are reported.
DOI: 10.6084/m9.figshare.5687794
title: Visualization of Angular Unconformities and Tectonic Angular Discordance Measurement Constraints by Structural Geometrical Flattening: Case Studies in the Permian (California), Grand Canyon (Arizona), Chad Basin (Nigeria), Algarve Basin (Iberian Peninsula), and the Aegean Sea Basin (Turkey)

description: Geometrical flattening of stratigraphic data (seismic data, outcrop data, and inter- preted well sections) is often practiced within a sequence stratigraphic framework with an emphasis on the chronostratigraphic order of sequence tracts. The representation of geological data within a chronostratigraphic framework reveals significant features such as non-depositional or erosional features (unconformities and condensed sections) that may not be obvious in the original domain. Angular unconformities represent time- significant surfaces formed when an older rock unit is tilted and truncated and a young- er rock unit is deposited on top of it; they present a noteworthy situation where the older rock unit may be composed of several sequence tracts, simultaneously separated from the younger rock unit by a common time-significant interface. This implies that chronostratigraphic interpretation can be applied across this interface by geometrically flattening the rock units. We apply geometrical flattening using newly developed soft- ware: WheelerLab. We examine case studies in the Permian Strata (California), the Grand Canyon (Arizona), the Chad Basin (Nigeria), the Algarve Basin (Iberian Peninsula), and the Aegean Sea Basin (Turkey). Results show that the angular unconformities are represented as angular shaped hiatuses in the chronostratigraphic section containing an acute angle less than or equal to the total tectonic angular rotation (sum of angular discordance and dip angle).
DOI: 10.6084/m9.figshare.5687791
title: Sequence Stratigraphy, Chronostratigraphy, and Spatio-Temporal Stratigraphic Thickness Variation of the Agbada Formation, Robertkiri and Delta Fields, Niger Delta, Nigeria

description: The Miocene-aged deltaic Agbada Formation, Niger Delta, Nigeria, is composed of prograding sediments deposited on a series of basin-ward tilted normal faults, characterized by structural collapse. It consists of shallow marine and non-marine deposits over- lying faulted collapsing sub-formation shale deposits. Sequence stratigraphic analysis of gamma ray wireline well logs shows that the Agbada Formation consists of at least four third order sequences. Thickness maps of the sequences and structural analysis of the sequence surfaces indicate rollover anticlinal structures reflecting the orientation of the underlying faults. Generally stratigraphic thinning of older sequences covers a wider areal extent than that of younger sequences and the sequences become thinner upward and landward. Chronostratigraphic analysis reveals the spatial variation in the location and zones of stratigraphic thinning. The stratigraphic thinning may be the result of erosion, non-deposition, or slower deposition. The spatial variation may be related to shift in fluvial deltaic deposition combined with a fall in the relative sea level.
DOI: 10.6084/m9.figshare.5687791.v1
title: Sequence Stratigraphy, Chronostratigraphy, and Spatio-Temporal Stratigraphic Thickness Variation of the Agbada Formation, Robertkiri and Delta Fields, Niger Delta, Nigeria

description: The Miocene-aged deltaic Agbada Formation, Niger Delta, Nigeria, is composed of prograding sediments deposited on a series of basin-ward tilted normal faults, characterized by structural collapse. It consists of shallow marine and non-marine deposits over- lying faulted collapsing sub-formation shale deposits. Sequence stratigraphic analysis of gamma ray wireline well logs shows that the Agbada Formation consists of at least four third order sequences. Thickness maps of the sequences and structural analysis of the sequence surfaces indicate rollover anticlinal structures reflecting the orientation of the underlying faults. Generally stratigraphic thinning of older sequences covers a wider areal extent than that of younger sequences and the sequences become thinner upward and landward. Chronostratigraphic analysis reveals the spatial variation in the location and zones of stratigraphic thinning. The stratigraphic thinning may be the result of erosion, non-deposition, or slower deposition. The spatial variation may be related to shift in fluvial deltaic deposition combined with a fall in the relative sea level.
DOI: 10.6084/m9.figshare.5687770
title: Summary of path exchange hybrid life cycle greenhouse gas emissions inventory for Plasterboard in Australia

description: This dataset provides a summary of the hybridisation process combining Australian process data (AusLCI) with Australian input-output data from the IELab (1284 sectors).<br>It replicates manually what is achieved programmatically in the reference paper.
DOI: 10.6084/m9.figshare.5687671
title: Repurposing of archived CO1 sequence data reveals unusually high genetic structure between North American and European zebra mussels (<i>Dreissena polymorpha</i>)

description: The invasion of the zebra mussel, <i>Dreissena polymorpha</i> in the Great Lakes of North America is regarded as one of the most catastrophic ecological events in recent history. Previous studies showed a close kinship between European zebra mussels and their invasive cohorts in the Great Lakes. In this study, we repurposed and reanalyzed archived CO1 sequence data from Lake Superior and multiple sites in Europe that were collected between 1991 and 2011 to illustrate an interesting pattern of genetic isolation that was overlooked in previous studies. The results showed extreme genetic isolation of Lake Superior zebra mussels as evident by high ϕ<sub>ST</sub> values and strong geographic patterning of Lake Superior haplotypes.
DOI: 10.6084/m9.figshare.5687671.v2
title: Repurposing of archived CO1 sequence data reveals unusually high genetic structure between North American and European zebra mussels (<i>Dreissena polymorpha</i>)

description: The invasion of the zebra mussel, <i>Dreissena polymorpha</i> in the Great Lakes of North America is regarded as one of the most catastrophic ecological events in recent history. Previous studies showed a close kinship between European zebra mussels and their invasive cohorts in the Great Lakes. In this study, we repurposed and reanalyzed archived CO1 sequence data from Lake Superior and multiple sites in Europe that were collected between 1991 and 2011 to illustrate an interesting pattern of genetic isolation that was overlooked in previous studies. The results showed extreme genetic isolation of Lake Superior zebra mussels as evident by high ϕ<sub>ST</sub> values and strong geographic patterning of Lake Superior haplotypes.
DOI: 10.4225/03/5a2e070a05949
title: Data from: The leading-edge vortex on a rotating wing changes markedly beyond a certain central body size

description: Stable attachment of a leading-edge vortex (LEV) plays a key role in generating the high lift on rotating wings with a central body. The central body-size can affect the LEV structure broadly in two ways. First, an overall change in the size changes the Reynolds number, which is known to have an influence on the LEV structure. Second, it may affect the Coriolis acceleration acting across the wing, depending on the wing-offset from the axis of rotation. To investigate this, the effects of Reynolds number and the wing-offset are independently studied for a rotating wing. The three-dimensional LEV structure is mapped using a scanning PIV technique. The rapid acquisition of images and their correlation are carefully validated. The results presented in this paper show that the LEV structure changes mainly with the Reynolds number. The LEV-split is found to be only minimally affected by changing the central body radius in the range of small offsets, which interestingly includes the range for most insects. However, beyond this small offset range, the LEV-split is found to change dramatically.