cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16601402.v5
title: PubMed classification 202302

description: The classification contains about 20 million PubMed publications from 1995 onward. It has been created using clustering in a citation network. The February 2023 update is a complete new version of the classification based on new clustering and labeling. File description PMID_cluster_relation_[date].csv contains the relation between PMIDs and clusters. Four levels are included: Level 1 - Topics - Most granular Level 2 - Specialties Level 3 - Disciplines Level 4 - Discipline group - Most coarse Labels For each level there is a table with labels (e.g. labels_lev1_[date].csv), related by an id (e.g lev1_cluster_id). Stats For each level there is a table with statistics (e.g. lev1_stats). The table includes the columns below. For more information about the "Clinical", "Human", "Animal" and "Molecular/Cellular Biology" categories, see https://nih.figshare.com/collections/iCite_Database_Snapshots_NIH_Open_Citation_Collection_/4586573 p - The number of publications in the cluster in the initial clustering. pct_clinical - The proportion of clinical articles sum_clinical - The number of clinical articles pct_human - The average of the fraction of MeSH terms that are in the "Human" category sum_human - The sum of fraction of MeSH terms that are in the "Human" category pct_animal - The average of the fraction of MeSH terms that are in the "Animal" category sum_animal - The sum of fraction of MeSH terms that are in the "Animal" category pct_molecular_cellular - The average of the fraction of MeSH terms that are in the "Molecular/Cellular Biology" category sum_molecular_cellular - The sum of fraction of MeSH terms that are in the "Molecular/Cellular Biology" category Visualizations: Base map of PubMed 2010-2022 Map of PubMed 2022 - Including hyperlinks to publications Map colored by % Clinical Map colored by % Human Map colored by % Animal<br> Map colored by % Molecular/Cellular See the figshare collection for further description.
DOI: 10.6084/m9.figshare.22880234
title: Impact of Cover Crops and Nitrogen Management on Soil Bacterial Alpha Diversity

description: Corn (<i>Zea mays</i> L.) nitrogen (N) strategies that account for fertilizer timing and source may differentially affect soil bacterial communities and require further validation when preceded by cover crops (CC). Field studies were conducted (2014–2016) evaluating the effects of daikon radish [<i>Raphanus sativus</i> (L.)], forage oat [<i>Avena sativa</i> (L.)], and no CC combined with multiple N management strategies on soil bacterial alpha diversity metrics. Nitrogen strategies consisted of 179 kg N ha<sup>−1</sup> applied pre-plant incorporated (PPI), poultry litter (PL) (61 kg N ha<sup>−1</sup>) applied PPI plus sidedress (SD) N at V11 (11 leaf collars), starter N (45 kg N ha<sup>−1</sup>) applied 5 cm beside and below the furrow followed by SD at V4 (4 leaf collars), V11, or 50:50 (split) V4 and V11, and a zero N control. In 1 of 2 years, radish reduced diversity 47–53% during active growth compared to remaining treatments. Inverse relationships regarding diversity of in-row (IR) soils at R1 (silking) and grain yield indicated that increased bacterial diversity did not correspond to increased grain production. Relative to PL and the zero-N control, starter N strategies reduced R1 rhizosphere bacterial diversity, evenness, and richness. Combining organic with soluble N sources may stabilize changes to soil alpha diversity metrics at corn silking.
DOI: 10.6084/m9.figshare.22880234.v1
title: Impact of Cover Crops and Nitrogen Management on Soil Bacterial Alpha Diversity

description: Corn (<i>Zea mays</i> L.) nitrogen (N) strategies that account for fertilizer timing and source may differentially affect soil bacterial communities and require further validation when preceded by cover crops (CC). Field studies were conducted (2014–2016) evaluating the effects of daikon radish [<i>Raphanus sativus</i> (L.)], forage oat [<i>Avena sativa</i> (L.)], and no CC combined with multiple N management strategies on soil bacterial alpha diversity metrics. Nitrogen strategies consisted of 179 kg N ha<sup>−1</sup> applied pre-plant incorporated (PPI), poultry litter (PL) (61 kg N ha<sup>−1</sup>) applied PPI plus sidedress (SD) N at V11 (11 leaf collars), starter N (45 kg N ha<sup>−1</sup>) applied 5 cm beside and below the furrow followed by SD at V4 (4 leaf collars), V11, or 50:50 (split) V4 and V11, and a zero N control. In 1 of 2 years, radish reduced diversity 47–53% during active growth compared to remaining treatments. Inverse relationships regarding diversity of in-row (IR) soils at R1 (silking) and grain yield indicated that increased bacterial diversity did not correspond to increased grain production. Relative to PL and the zero-N control, starter N strategies reduced R1 rhizosphere bacterial diversity, evenness, and richness. Combining organic with soluble N sources may stabilize changes to soil alpha diversity metrics at corn silking.
DOI: 10.5281/zenodo.8020313
title: Data for Radiation and temperature drive diurnal variation of aerobic methane emissions from Scots pine canopy

description: Aerobic methane emissions from plant foliage may play an important role in the global methane cycle, but their size and the underlying source processes remain poorly understood. Here, we quantify methane fluxes from the shoots Scots pine trees, a dominant tree species in boreal forests, identify source processes and environmental drivers, and evaluate the potential of leaf emissions to constrain methane emissions at the ecosystem-level eddy covariance flux measurements. We show that shoot-level measurements conducted in forest, garden, or greenhouse settings; on mature trees and saplings; manually and with an automated CO<sub>2</sub> -, temperature-, and water-controlled chamber system; and with multiple methane analysers all resulted in comparable daytime flux rates (0.094±0.035 to 0.241±0.090 nmol CH<sub>4</sub> g<sup>-1</sup> foliar dw h<sup>-1</sup>). We find that methane emissions from Scots pine shoots exhibit a pronounced diurnal cycle that closely follows photosynthetically active radiation (PAR) and is further modulated by temperature. These diurnal patterns indicate that methane production is associated with diurnal cycle of sunlight, suggesting that methane is either a byproduct of photosynthesis-associated biochemical reactions (e.g. the methionine cycle) or produced through non-enzymatic photochemical reactions in plant biomass. Moreover, we identified a light-dependent component in stand-level methane fluxes, which showed an order-of-magnitude agreement with shoot-level measurements (0.968±0.031 nmol CH<sub>4</sub> g<sup>-1</sup> h<sup>-1</sup>), and which provides an upper limit to shoot methane emissions.
description: added missing datapoints in garden measurements
DOI: 10.5281/zenodo.8020314
title: Data for Radiation and temperature drive diurnal variation of aerobic methane emissions from Scots pine canopy

description: Aerobic methane emissions from plant foliage may play an important role in the global methane cycle, but their size and the underlying source processes remain poorly understood. Here, we quantify methane fluxes from the shoots Scots pine trees, a dominant tree species in boreal forests, identify source processes and environmental drivers, and evaluate the potential of leaf emissions to constrain methane emissions at the ecosystem-level eddy covariance flux measurements. We show that shoot-level measurements conducted in forest, garden, or greenhouse settings; on mature trees and saplings; manually and with an automated CO<sub>2</sub> -, temperature-, and water-controlled chamber system; and with multiple methane analysers all resulted in comparable daytime flux rates (0.094±0.035 to 0.241±0.090 nmol CH<sub>4</sub> g<sup>-1</sup> foliar dw h<sup>-1</sup>). We find that methane emissions from Scots pine shoots exhibit a pronounced diurnal cycle that closely follows photosynthetically active radiation (PAR) and is further modulated by temperature. These diurnal patterns indicate that methane production is associated with diurnal cycle of sunlight, suggesting that methane is either a byproduct of photosynthesis-associated biochemical reactions (e.g. the methionine cycle) or produced through non-enzymatic photochemical reactions in plant biomass. Moreover, we identified a light-dependent component in stand-level methane fluxes, which showed an order-of-magnitude agreement with shoot-level measurements (0.968±0.031 nmol CH<sub>4</sub> g<sup>-1</sup> h<sup>-1</sup>), and which provides an upper limit to shoot methane emissions.
DOI: 10.5281/zenodo.8027450
title: Data for Radiation and temperature drive diurnal variation of aerobic methane emissions from Scots pine canopy

description: Aerobic methane emissions from plant foliage may play an important role in the global methane cycle, but their size and the underlying source processes remain poorly understood. Here, we quantify methane fluxes from the shoots Scots pine trees, a dominant tree species in boreal forests, identify source processes and environmental drivers, and evaluate the potential of leaf emissions to constrain methane emissions at the ecosystem-level eddy covariance flux measurements. We show that shoot-level measurements conducted in forest, garden, or greenhouse settings; on mature trees and saplings; manually and with an automated CO<sub>2</sub> -, temperature-, and water-controlled chamber system; and with multiple methane analysers all resulted in comparable daytime flux rates (0.094±0.035 to 0.241±0.090 nmol CH<sub>4</sub> g<sup>-1</sup> foliar dw h<sup>-1</sup>). We find that methane emissions from Scots pine shoots exhibit a pronounced diurnal cycle that closely follows photosynthetically active radiation (PAR) and is further modulated by temperature. These diurnal patterns indicate that methane production is associated with diurnal cycle of sunlight, suggesting that methane is either a byproduct of photosynthesis-associated biochemical reactions (e.g. the methionine cycle) or produced through non-enzymatic photochemical reactions in plant biomass. Moreover, we identified a light-dependent component in stand-level methane fluxes, which showed an order-of-magnitude agreement with shoot-level measurements (0.968±0.031 nmol CH<sub>4</sub> g<sup>-1</sup> h<sup>-1</sup>), and which provides an upper limit to shoot methane emissions.
description: added missing datapoints in garden measurements
DOI: 10.6084/m9.figshare.23501139
title: Initial Structures of CaHx & CeHx.rar

description: Initial Structures of CaHx and CeHx
DOI: 10.6084/m9.figshare.23501139.v1
title: Initial Structures of CaHx & CeHx.rar

description: Initial Structures of CaHx and CeHx
DOI: 10.21227/e8w7-tn88
title: Programming language comparision from instrument automation perspective

description:  The data corresponding to the performance analysis of four programming languages, namely, LabVIEW, MATLAB, C, and Python, from an instrument automation perspective is presented. The codes are written for sensors, instruments interfacing, real-time control, synchronized data acquisition, simultaneous raw data processing and analysis. Comparative analysis data based on the launch performance, eight background processes performance indices and runtime performance is provided. The launch performance for language recorded by starting the corresponding IDE after a fresh restart of the system, then it is started several times. The time was recorded until the IDE became responsive. The background performance indices used are Processor utilization(% Processor Time), RAM(Private bytes) usage, IO(Input/Output) Data Bytes/sec, IO Data Operations/sec, IO Read Bytes/sec, IO Read Operations/sec, IO Write Bytes/sec, IO Write Operations/sec. The runtime performance parameters includes Instrument interfacing, data acquisition, read/write data, data processing, data visualisation.
DOI: 10.5281/zenodo.7636306
title: Spatially resolved mock observations of stellar kinematics: full radiative transfer treatment of the simulated galaxies of the Auriga project

description: We present realistic mock spectroscopic observations for state-of-the-art hydrodynamical simulations, using high spectral resolution stellar population models (FSPS) and full radiative transfer treatment with SKIRT. The dataset contains IFS-like spectroscopy of the stellar continuum for 10 (of the 30) galaxies in the Auriga Project at z=0. One galaxy at z=0.8 (Au 6) and another at z=3 (Au 29).
description: Visit www.auriga.ugent.be for further information. This project received funding from the European Research Council (ERC) under the European Union's Horizon 2020 Framework Programme, grant agreement no. 683184 (Consolidator Grant LEGA-C). D.B, M.B and A.U.K acknowledge the financial support of the Flemish Fund for Scientific Research (FWO-Vlaanderen), research projects G039216N and G030319N. R.G acknowledges financial support from the Spanish Ministry of Science and Innovation (MICINN) through the Spanish State Research Agency, under the Severo Ochoa Program 2020-2023 (CEX2019-000920-S) and an STFC Ernest Rutherford Fellowship (ST/W003643/1).
DOI: 10.5281/zenodo.7636305
title: Spatially resolved mock observations of stellar kinematics: full radiative transfer treatment of the simulated galaxies of the Auriga project

description: We present realistic mock spectroscopic observations for state-of-the-art hydrodynamical simulations, using high spectral resolution stellar population models (FSPS) and full radiative transfer treatment with SKIRT. The dataset contains IFS-like spectroscopy of the stellar continuum for 10 (of the 30) galaxies in the Auriga Project at z=0. One galaxy at z=0.8 (Au 6) and another at z=3 (Au 29).
description: Visit www.auriga.ugent.be for further information. This project received funding from the European Research Council (ERC) under the European Union's Horizon 2020 Framework Programme, grant agreement no. 683184 (Consolidator Grant LEGA-C). D.B, M.B and A.U.K acknowledge the financial support of the Flemish Fund for Scientific Research (FWO-Vlaanderen), research projects G039216N and G030319N. R.G acknowledges financial support from the Spanish Ministry of Science and Innovation (MICINN) through the Spanish State Research Agency, under the Severo Ochoa Program 2020-2023 (CEX2019-000920-S) and an STFC Ernest Rutherford Fellowship (ST/W003643/1).
DOI: 10.5281/zenodo.8026969
title: Milieuvergunningen Antwerpen 1983-1985

description: <em>This dataset contains information on the applications for a “Milieuvergunning” (environmental permit) handled by the City of Antwerp between 1983 and 1985. In particular, the dataset documents cases in which citizens filed complaints against the requested permits within the so called “commodo et incommodo” procedure, which was a mandatory prerequisite for granting a permit for polluting and</em> <em>potentially harmful businesses according to Belgian legislation. With this data it is possible to analyze which cases met with opposition from local residents and where opposition was absent. In addition, the dataset allows to go back to the original archival files and reconstruct cases in depth.</em>
DOI: 10.5281/zenodo.8026968
title: Milieuvergunningen Antwerpen 1983-1985

description: <em>This dataset contains information on the applications for a “Milieuvergunning” (environmental permit) handled by the City of Antwerp between 1983 and 1985. In particular, the dataset documents cases in which citizens filed complaints against the requested permits within the so called “commodo et incommodo” procedure, which was a mandatory prerequisite for granting a permit for polluting and</em> <em>potentially harmful businesses according to Belgian legislation. With this data it is possible to analyze which cases met with opposition from local residents and where opposition was absent. In addition, the dataset allows to go back to the original archival files and reconstruct cases in depth.</em>
DOI: 10.15156/bio/2938060
title: Adamson K., Vester M, Kütt K, Riit T, Padari A, Jürimaa K, Drenkhan R. Distribution, conk occurrence and basidiospores dispersal of Inonotus obliquus
DOI: 10.15156/bio/2938063
title: Adamson K., Vester M, Kütt K, Riit T, Padari A, Jürimaa K, Drenkhan R. Distribution, conk occurrence and basidiospores dispersal of Inonotus obliquus
DOI: 10.6084/m9.figshare.23501163
title: Coding sequences

description: Annotation of high-quality genome sequencing and assembly of 2 wild barley from Evolutionary Canyon.
DOI: 10.6084/m9.figshare.23501163.v1
title: Coding sequences

description: Annotation of high-quality genome sequencing and assembly of 2 wild barley from Evolutionary Canyon.
DOI: 10.15156/bio/2938064
title: Adamson K., Vester M, Kütt K, Riit T, Padari A, Jürimaa K, Drenkhan R. Distribution, conk occurrence and basidiospores dispersal of Inonotus obliquus
DOI: 10.17632/h5xw3cwmyj.1
title: Zebrafish larvae use stimulus intensity and contrast to estimate distance to prey

description: The data was collected from different experiments that were conducted during the course of the study.  The raw data has been processed. The data contains side and back camera recordings from example strike and nonstrike trails from different experiments conducted during this study along with the processed CSV files containing eye, tail, jaw depression, head elevation tracking, and detected strike frames for those videos have been uploaded. The readme file has been provided for the same.
DOI: 10.34740/kaggle/dsv/5908491
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.34740/kaggle/dsv/5908500
title: UNET Lung Segmentation Weights for Chest X Rays
DOI: 10.5519/qd.dib9jfew
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.23500386
title: huARdb-GEX-paper-datasets

description: Analysis of Pan-disease CD8 T cells
DOI: 10.6084/m9.figshare.23500386.v1
title: huARdb-GEX-paper-datasets

description: Analysis of Pan-disease CD8 T cells
DOI: 10.5517/ccdc.csd.cc2dm86j
title: CCDC 2223047: Experimental Crystal Structure Determination

description: Related Article: Dongdong Chang, Jiangyu Zhu, Yutao Sun, Kai Chi, Yanjun Qiao, Teng Wang, Yan Zhao, Yunqi Liu, Xuefeng Lu|2023|Chemical Science|14|6087|doi:10.1039/D3SC01295F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dm87k
title: CCDC 2223048: Experimental Crystal Structure Determination

description: Related Article: Dongdong Chang, Jiangyu Zhu, Yutao Sun, Kai Chi, Yanjun Qiao, Teng Wang, Yan Zhao, Yunqi Liu, Xuefeng Lu|2023|Chemical Science|14|6087|doi:10.1039/D3SC01295F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dm88l
title: CCDC 2223049: Experimental Crystal Structure Determination

description: Related Article: Dongdong Chang, Jiangyu Zhu, Yutao Sun, Kai Chi, Yanjun Qiao, Teng Wang, Yan Zhao, Yunqi Liu, Xuefeng Lu|2023|Chemical Science|14|6087|doi:10.1039/D3SC01295F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dm89m
title: CCDC 2223050: Experimental Crystal Structure Determination

description: Related Article: Dongdong Chang, Jiangyu Zhu, Yutao Sun, Kai Chi, Yanjun Qiao, Teng Wang, Yan Zhao, Yunqi Liu, Xuefeng Lu|2023|Chemical Science|14|6087|doi:10.1039/D3SC01295F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.23501283
title: FINAL STATISTICS_PRE randomized controlled trial.xlsx

description: This file containes all available data regarding the project
DOI: 10.6084/m9.figshare.23501283.v1
title: FINAL STATISTICS_PRE randomized controlled trial.xlsx

description: This file containes all available data regarding the project
DOI: 10.14284/608
title: Electrical resistivity tomography and continuous resistivity profiling in front of Raversijde, Wenduine, Blankenberge, and Zwin

description: Land ERT (electrical resistivity tomography) and marine CRP (continuous resistivity profiling) data in the areas of Raversijde, Wenduine, Blankenberge, and Zwin.
description: The combination of two geophysical techniques is used to assess the fresh- and salt water distribution in the phreatic aquifer. It enable to locate zone of saltwater intrusion and fresh submarine groundwater discharge. The data was collected in the framework of the PhD research of Marieke Paepen, Laboratory of Applied Geology and Hydrogeology (Ugent). Logistical support was provided by VLIZ for the marine surveys.