cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7361425
title: Pre-calculated turning points of Stability-curve for stationary Shakura-Sunyaev accretion disc

description: The pre-calculated turning points for surface density \(\Sigma\), effective temperature \(T_{\rm eff}\) and accretion rate \(\dot{M}\) of S-shaped stability curve for stationary Shakura-Sunyaev viscous accretion disc. Calculations performed for 20 linearly scaled values of central source mass from \(1\, M_{\odot}\) to \(20\, M_{\odot}\), 20 logarithmically scaled values of viscous parameter \(\alpha\) from \(3\cdot10^{-4}\) to 0.7, 20 logarithmically scaled values of radius from \(7\cdot10^7\) cm to \(5\cdot10^{11}\) cm.


The new open-source Python3 code is used to calculate the vertical structure of the disc with tabular opacity (solar chemical composition) and both convective and radiative energy transport taking into account. As a result, one can obtain S-shaped stability curve — a graphically depicted sequence of solutions of the vertical-structure equations, obtained at a single disc radius, in the coordinates of accretion rate or effective temperature versus the surface density. S-curve turn points allow to investigate the stability of disc with respect to temperature and surface density fluctuations. 


Reading of the data (Python3):


import numpy as np
data = np.genfromtxt('Turn_points_array.dat', names=True)
DOI: 10.6073/pasta/3b04321e69aaad49049452aa85e99780
title: Root and Mycorrhizal Respiration at Harvard Forest Soil Warming Experiments 2007-2008

description: Soil heating typically causes large initial increases in soil respiration, with the enhancement lessening over time. This transient response is attributed to rapid decomposition of labile soil C compounds in the first years of heating, but the potential role of changes in root and mycorrhizal respiration is not well understood. To assess the degree to which root respiration adjusts to warmer soil temperature regimes, specific root respiration rates (nmol CO2/g/s) are being measured in three soil warming experiments at Harvard Forest. Soils in the experiments had been heated since 1991, 2003 and 2006. Respiration rates for fine roots (less than 1 mm) from control and heated plots were measured both at a common reference temperature of 18 deg C and at the ambient soil temperature of the measurement date for the control and heated (+ 5 deg C) treatments. Mycorrhizal respiration is being assessed through the use of hyphal ingrowth bags which allow determination both mycorrhizal hyphal biomass and respiration rate. Changes in mycorrhizal community composition are also being investigated.
 Specific questions we will address include: Does rapid temperature acclimation occur in roots of large perennial woody plants? How do root biomass, root N concentration, and root respiration rates adjust to long-term changes in soil temperature and moisture and concomitant changes in N availability? How is mycorrhizal biomass and activity influenced by the effects of warmer soil temperatures on host C balance and soil N availability? How do the short- and long-term responses of roots and mycorrhizae to warming and associated changes in soil nutrient cycling affect soil CO2 efflux and C availability for aboveground NPP? Are the interrelationships between warmer soil temperature regimes and C fluxes to and from roots and mycorrhizae adequately described by current ecophysiological models?
DOI: 10.26093/cds/aladin/8txd-c4
title: ACT2 DR4 CMB HiPS

description: The Atacama Cosmology Telescope (ACT) is a six-meter diameter telescope on Cerro Toco in the Atacama Desert of northern Chile (image above by Jon Ward). It is designed to make high-resolution measurements of the cosmic microwave background (CMB) temperature and polarization anisotropies and detect massive galaxy clusters via the thermal Sunyaev Zel'dovich (tSZ) effect. Reconstruction of the CMB lensing potential will play a key role in the cosmological detection of neutrino mass, and measuring the imprint of primordial gravitational waves in B-mode polarization could provide unique insights into the early universe and quantum nature of gravity. The majority of the DR4 products use data collected from 2013-16. DR4 also includes data collected from 2008-10. The second-generation, polarization-sensitive receiver ACTPol observed between 2013 and 2016. The four-year survey consists of 17,000 square degrees of the sky mapped at 98 and 150 GHz, with the deepest 600 square degrees at a noise &lt; 10 uK-arcmin.
DOI: 10.5281/zenodo.10079405
title: Connectivity matrix of the internal connectivity of a SSCX model

description: This is a simplified view of the internal synaptic connectivity of the model deposited under https://zenodo.org/records/8026353.
While in this view a lot of data is lost compared to the detailed representation linked above (such as the pre- and postsynaptic locations of synaptic contacts and their physiology), it can still be used for structural connectomics analyses.
The data is in a format that can be loaded using our Connectome_Utilities package. We have converted the internal connectivity of the MICrONS dataset into the same format (found here), allowing researchers to easily run the same analysis scripts on both datasets.
DOI: 10.5281/zenodo.10079406
title: Connectivity matrix of the internal connectivity of a SSCX model

description: This is a simplified view of the internal synaptic connectivity of the model deposited under https://zenodo.org/records/8026353.
While in this view a lot of data is lost compared to the detailed representation linked above (such as the pre- and postsynaptic locations of synaptic contacts and their physiology), it can still be used for structural connectomics analyses.
The data is in a format that can be loaded using our Connectome_Utilities package. We have converted the internal connectivity of the MICrONS dataset into the same format (found here), allowing researchers to easily run the same analysis scripts on both datasets.
DOI: 10.6073/pasta/1bcdb8d01ce10c9029677d6a3dde84c3
title: Allelopathy of Frangula Alnus to Native New England Wetland Vegetation at Harvard Forest 2008

description: Glossy buckthorn (Frangula alnus), an invasive shrub from Eurasia, colonizes both upland and mesic sites in New England, USA, reducing the growth and survival of native tree saplings and lowering species richness. Although a generalist, buckthorn thrives particularly well along river, pond, and wetland margins, which are traditional habitat for speckled alder (Alnus incana ssp. rugosa), a native nitrogen-fixing shrub. As buckthorn’s dense, monospecific growth is typical of allelopaths, we wondered whether it chemically suppresses the growth of alder and other indigenous shrubs. We thus propagated three native shrub species: Alnus incana ssp. rugosa, Viburnum dentatum and Spiraea latifolia, in invasive buckthorn and native dogwood (Cornus amomum) root and leaf mulch. After seven weeks, alder grown in buckthorn root demonstrated significantly smaller basal diameter than alder grown in buckthorn leaf or other mulches. Therefore, putative buckthorn allelopathy to alder likely occurs through root exudation instead of leaf litter effects. Meadowsweet grown in buckthorn mulch, in contrast, was taller, thicker, and had more numerous leaves than meadowsweet grown in native mulch. These species-specific effects point to allelopathy as a mechanism by which buckthorn changes the structure of native plant communities.
DOI: 10.48529/gyev-2888
title: Sugira Muryango Early Childhood Development Home Visiting Intervention Trial 2017-2019
title: RWA_2017-2019_SMHVIT_v01_M
DOI: 10.6073/pasta/0cbab8881e373b746c7fcb65242b691f
title: Role of Moose and Deer Browsing in Harvested Forests of Southern New England since 2008

description: In the past 20 years, moose have spread south from Vermont and New Hampshire and recolonized their pre-historical range limit in southern New England from which they had been extirpated almost 200 years earlier. Intensive moose browsing in the boreal forest has caused declines in forest density and shifts in species composition in some areas, generating considerable interest and concern among foresters, wildlife managers, and ecologists as to how moose along with white-tailed deer will impact forest development in this region. Harvard Forest in collaboration with researchers at the USGS Massachusetts Cooperative Research Unit has initiated a long-term study of the role of moose and deer in SNE forests using experimental exclosures. The design is a randomized block with 3 factors -- full exclosure, partial exclosure, and control plot. Full exclosures exclude both moose and deer but allow access to small mammals such as mice, squirrels, and rabbits. Partial exclosures have a 60cm opening around the bottom perimeter of the fence, which excludes moose but allows access to deer and other small and medium-sized animals. The design enables us to quantify forest composition and structure in areas (1) exposed to moose and deer browsing,(2) protected from moose and deer browsing, and (3) exposed to deer browsing but protected from moose browsing.
DOI: 10.5281/zenodo.10285076
title: MSV000093464_batch_01

description: .ttl graphs build from the files in positive ionization mode, batch 01/04. 
Input dataset https://doi.org/10.5281/zenodo.10198219
Original dataset https://doi.org/doi:10.25345/C5SB50
DOI: 10.5281/zenodo.10285075
title: MSV000093464_batch_01

description: .ttl graphs build from the files in positive ionization mode, batch 01/04. 
Input dataset https://doi.org/10.5281/zenodo.10198219
Original dataset https://doi.org/doi:10.25345/C5SB50
DOI: 10.6073/pasta/5bc9cb80894bed5612525c86d9386670
title: Tree Growth and Coarse Woody Debris in Regenerating Forests at Harvard Forest since 2008

description: This project is a field-based study to measure sequestration of atmospheric carbon dioxide in a regenerating New England forest. This study established long-term biometric plots suitable for measuring changes in carbon storage through time in three forest stands: an early-20th-century conifer plantation, a naturally regenerating former conifer plantation harvested in the 1990s, and a conifer plantation scheduled for harvest next winter. The first three years of this project determined the initial carbon budget of these forest stands, measured carbon fluxes into and out of these stands, and laid the groundwork for future investigations. Subsequent years will investigate larger-scale questions, such as how successional patterns affect carbon sequestration, and how these patterns change with stand age. The work also addresses how forestry practices influence carbon sequestration, and provide guidance for how forest management could enhance terrestrial carbon uptake in the future.
DOI: 10.6073/pasta/037034983ac0050893f56805b125b10b
title: Nonstructural Carbohydrates in Forest Trees at Harvard Forest 2007-2010

description: Forest trees accumulate and store surplus nonstructural carbohydrates (NSC) as resources to be used to support future growth. This can be viewed as a conservative investment strategy, providing reserves that the tree can utilize in times of stress. NSC reserves are thus important in the context of forest responses to climate change, and forest ecosystem carbon cycling. At quarterly intervals over a three year period, we have monitored stemwood nonstructural carbohydrate (NSC) reserves of the dominant tree species of New England at three sites along a forest composition gradient: an oak-dominated transition hardwood forest (Harvard Forest), a maple-beech-birch northern hardwood forest (Bartlett Experimental Forest), and a spruce-fir boreal transition forest (Howland Forest). Adding to recent evidence indicating that in mature forest trees the nonstructural carbohydrate pool is surprisingly large, our results suggest that this pool is also highly dynamic, and unexpectedly old. In most species, seasonal dynamics in starch (2-4x higher in the growing season, lower in the dormant season) mirrored those of sugars.
 This data set contains 3 y of quarterly NSC concentration measurements (stemwood starch and sugars - sucrose, glucose, fructose, raffinose, stachyose - in mg per g OD wood tissue) for red maple, eastern hemlock, and red oak at the Harvard Forest.
DOI: 10.26093/cds/aladin/3rag-15t
title: AKARI FIS Color WideL (140um), WideS (90um), N60 (65um) HiPS

description: AKARI (Previously known as ASTRO-F or IRIS - InfraRed Imaging Surveyor) is the second space mission for infrared astronomy in Japan. AKARI was developed by the members of JAXA/ISAS and collaborators. IRAS (Infrared Astronomical Satellite, launched in 1983 by the United Kingdom, the United States, and the Netherlands) carried out the first all-sky survey at infrared wavelengths and made a huge impact on astronomy. The AKARI mission was an ambitious plan to make an all-sky survey with much better sensitivity, spatial resolution and wider wavelength coverage than those of IRAS. All-sky survey obtained by the Far-Infrared Surveyor (FIS) onboard the AKARI satellite, at 65um (Color), 90 um (WIDE-S), 140um (WIDE-L),and 160um (N160). See http://www.ir.isas.jaxa.jp/AKARI/Archive/Images/FIS_AllSkyMap/Doi_AKARI_FIR_AllSkySurvey.pdf.
DOI: 10.6073/pasta/1d65cf68f691248fe6d554f06b2c0da9
title: Soil Arthropods in Hemlock Removal Experiment at Harvard Forest 2008

description: In eastern North American forests, eastern hemlock (Tsuga canadensis) is a foundation species. As hemlock is lost from forests due to the invasive hemlock woolly adelgid (Adelges tsugae) and pre-emptive salvage logging, the structure of assemblages of species associated with hemlock is expected to change. We manipulated hemlock canopy structure at hectare scales to investigate the effects of hemlock death on assemblages of ants, beetles, and spiders in a New England forest. Relative to reference hemlock stands, both in situ death of hemlock and logging and removal of hemlock altered composition and diversity of beetles and spiders, and logging increased the species richness and evenness of ant assemblages. Species composition of ant assemblages in disturbed habitats was non-random relative to the regional species pool, but we found no evidence that interspecific competition shaped the structure of ant, beetle or spider assemblages, in either manipulated or intact forest stands. Environmental filtering by hemlock appears to maintain low levels of species richness and evenness in forest stands, suggesting that the loss of hemlock due to the hemlock woolly adelgid or human activities will not likely lead to extirpations of ant, beetle, or spider species at local scales.
DOI: 10.5281/zenodo.10285382
title: MSV000093464_batch_02

description: .ttl graphs build from the files in positive ionization mode, batch 02/04. 
Input dataset https://doi.org/10.5281/zenodo.10198219
Original dataset https://doi.org/doi:10.25345/C5SB50
DOI: 10.5281/zenodo.10285383
title: MSV000093464_batch_02

description: .ttl graphs build from the files in positive ionization mode, batch 02/04. 
Input dataset https://doi.org/10.5281/zenodo.10198219
Original dataset https://doi.org/doi:10.25345/C5SB50
DOI: 10.48784/eb21f179-5e4b-42c2-8b53-2e3b14ee4551
title: HEU MODERATE Building Stock Data

description: The HEU MODERATE Building Stock Data provides information regarding the building stock for all EU27 member states at the national level (i.e., NUTS 0) considering 2020 as the reference year. 

Regarding the Service Sector, the data distinguishes the following subsectors: single-family houses, multifamily houses, and apartment blocks. Regarding the Service Sector, the data distinguishes the following subsectors: offices, trade, education, health, hotels and restaurants, and other non-residential buildings. Moreover, for each subsector, the data distinguishes the following construction periods: before 1945, 1945-1969, 1970-1979, 1980-1989, 1990-1999, 2000-2010, and 2011-2020. 

For each building stock subsector and construction period, the data provide information regarding total values at the national level for:

 - Number of buildings
 - Number of dwellings
 - Number of dwellings according to ownership (i.e., owner occupied, rented, social housing) 
 - Number of dwellings according to occupation (i.e., occupied, vacant, secondary houses) 
 - Total constructed area
 - Total heated area
 - Total cooled area
 - Total final energy consumption for space heating and domestic hot water
 - Total final energy consumption for space cooling

Moreover, the following average values for single building characteristics are provided:

 - Number of floors
 - Volume-to-surface ratio
 - Vertical area
 - Ground area
 - Window surface
 - U-values for the different building elements (roof, walls, windows, and floors) 
 - Useful energy demand (ued) differentiating between space heating, domestic hot water, and space cooling
 - Final energy consumption (fed) differentiating between space heating, domestic hot water, and space cooling

Finally, the data provide information about the prevalence of:
 
- Building materials and methodology for the different building elements (roof, walls, windows, and floors)
- Different systems used for space heating, domestic hot water, and space cooling

The data is provided as a `csv` file (long format with all details and data source) and as an excel file (wide format with separate sheets for each country). Data and a complete description of the available fields can be found at https://github.com/MODERATE-Project/building-stock-analysis/tree/main/T3.2-static-analysis 

The dataset was obtained by combining information from European and national resources and the review of scientific literature. Data gaps were subsequently filled via statistical modeling.
DOI: 10.6073/pasta/d767246af14d7cf2ab5537fbdffb889c
title: Inorganic Nitrogen Pools and Tree Composition in Hemlock Removal Experiment at Harvard Forest 2007-2009

description: This study assessed how the change in leaf litter input and environmental conditions, from that of hemlock stands to earlier successional deciduous stands, will affect inorganic nitrogen availability at the interface of the mineral soil and LFH horizons. In early October 2007 we exchanged 0.5 x 0.5 m "loaves" of LFH horizons from hemlock and deciduous stands between forest types, while keeping control plots in the original forest stands. Inorganic nitrogen outputs from the litter loaves were monitored for 20 months using ion-exchange resins, removing and replacing the resins three times at 5 - 8 month intervals. Results indicated that there were differences between the control hemlock and deciduous loaves - NO3 and NH4 availability were higher in deciduous stands. However, the transfer of litter loaves from one stand type to another did not reveal changes in nutrient availability due to a shift in habitat. Rather, the methodology of moving litter loaves to a new site caused greater changes in nutrient availability, particularly over the summer months.
DOI: 10.5281/zenodo.10285451
title: MSV000093464_batch_03

description: .ttl graphs build from the files in positive ionization mode, batch 03/04. 
Input dataset https://doi.org/10.5281/zenodo.10198219
Original dataset https://doi.org/doi:10.25345/C5SB50
DOI: 10.5281/zenodo.10285452
title: MSV000093464_batch_03

description: .ttl graphs build from the files in positive ionization mode, batch 03/04. 
Input dataset https://doi.org/10.5281/zenodo.10198219
Original dataset https://doi.org/doi:10.25345/C5SB50
DOI: 10.6073/pasta/6f2ccc4a868889342384b362dd995527
title: Regional and Historical Variation in Garlic Mustard Distribution in Western Massachusetts 2006-2007

description: The susceptibility of a site to invasion by nonnative species depends on its current ecological features and its historical land use. Certain environments might be more conducive to an invasive plant’s success, and several recent studies have shown that former agricultural sites are more susceptible to invasion than sites that have been continuously wooded. We studied the invasive herb garlic mustard (Alliaria petiolata), at roadside forested edges. Site selection was stratified by two regions with distinct ecological characteristics (the Connecticut River Valley and the Berkshire Valley in Massachusetts), and two historical land uses (wooded versus cleared in 1830).
DOI: 10.57745/axtgg3
title: rmqs1_ratio_18s_16s.tab

description: TSV file with four columns:
- site number from the RMQS
- Bacterial density corrected per gram of soil
- Fungal density corrected per gram of soil
- F:B ratio values
DOI: 10.57745/rxfacq
title: 2023_02-qPCR_data_Frontiers.tab

description: TSV file with four columns:
- site number from the RMQS
- Bacterial density corrected per gram of soil
- Fungal density corrected per gram of soil
- F:B ratio values
DOI: 10.57745/azolgr
title: rmqs1_ratio_18s_16s.ct_values.tab

description: Seven columns file with for each RMQS site:
- id_site,
- Ct (qPCR threshold cycles) for 16S,
- adjusted Ct for 16S,
- qPCR plate for 16S,
- Ct for 18S,
- adjusted Ct for 18S,
- and qPCR plate for 18S values.
DOI: 10.5281/zenodo.10283118
title: tBiomedL: Larger Semantic Table Annotations Benchmark for Biomedical Domain

description: tBiomedL is a dataset for tabular data to knowledge graph matching. It is derived for the Biodiversity domain and has two types of tables. On the one hand, Horizontal Relational Tables are where each table represents a collection of entities. On the other hand, Entity Tables represent a single entity. We supported ground truth data from Wikidata as a target knowledge graph (KG).
tBiomedL is generated by KG2Tables using five levels of a recursive hierarchy of related concepts in Wikidata. It is the successor work of tBiomed
tBiomedL contains 860,479 entity and horizontal tables, while this repository contains only a sample of 1% of the total of the entire benchmark with its ground truth data (gt). The Full size of this dataset is 27 GB. We will update this repository with the full dataset, including the test fold with its ground truth data in the Future.
Please get in touch if you are interested in the full dataset, 
The supported tasks for semantic table annotations are: 

Topic Detection (TD) links the entire table to an entity or a class from the target KG.
Cell Entity Annotation (CEA) maps individual table cells to entities from the target KG.
Column Type Annotation (CTA) links individual table columns to classes from the target KG.
Column Property Annotation (CPA) detects the relations between column pairs from the target knowledge graph.
Row Annotation (RA) annotates the entire row to a KG entity or property.
DOI: 10.5281/zenodo.10285515
title: MSV000093464_batch_04

description: .ttl graphs build from the files in positive ionization mode, batch 04/04. 
Input dataset https://doi.org/10.5281/zenodo.10198219
Original dataset https://doi.org/doi:10.25345/C5SB50
DOI: 10.5281/zenodo.10285516
title: MSV000093464_batch_04

description: .ttl graphs build from the files in positive ionization mode, batch 04/04. 
Input dataset https://doi.org/10.5281/zenodo.10198219
Original dataset https://doi.org/doi:10.25345/C5SB50