cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21227/ah51-rn18
title: Hibbot data - proof of concept

description: This dataset contains the output from 3D gait analysis.Over a period of 3 months, between January 1st and March 31st in 2019, 5 children were familiarized with the Hibbot by using the walking aid for 30 minutes, twice a week, under the supervision of a physiotherapist. Physical examination and gait analysis were performed before (December 17 – 21, 2018) and after (April 1 – 5, 2019) a familiarisation period with the Hibbot, at the local gait lab.Children had to meet the following inclusion criteria: confirmed diagnosis of CP, GMFCS level II-IV, age between 2 and 7 years, stature less than 1.25 meters and body weight less than 30 kilograms.Children were encouraged to walk at self-selected speed over the walkway in Hibbot or using their habitual walking aid (if necessary, Table I) in a randomized order. Patients walked either barefoot or with ankle-foot orthoses, if necessary.Kinematics and kinetics of gait were recorded by an optical motion capture system (8 camera’s, 120 Hz., Qualisys Proreflex, Goteborg, Sweden) surrounding a 10-meter walkway and synchronized with 3 force-platforms (two of 0.5mx0.5m and one of 1.0x0.5m; AMTI Accugait, 1000 Hz., Advanced Medical Technology Inc., Massachusetts, USA). Reflective markers were attached to the skin over specific anatomical landmarks:Markers were placed on processus spinosus of the 7th cervical vertebra (C7), incisura jugulars (IJ), processus xyphoideus (PX) and bilaterally over the clavicular head (CC), major trochanteres (TM), lateral epicondyles (LE), lateral malleoli (LM), calcanei (CA) and 2nd metatarsal heads (MTII).Gait analysis data in C3D file format was analysed using visual 3D software (Visual3D Professional v5.01.9, C-motion, Kingston, ON, Canada) and custom models. The body was modelled as an interconnected chain of rigid segments: CC – TM for trunk, TM – LE for thigh, LE – LM for leg and LM – MT for foot. In addition, the thorax was modelled as a 6 – degrees – of – freedom segment with the segment coordinate system definitions partially adapted from the ISB recommendations.
DOI: 10.6084/m9.figshare.4884389
title: Table S5. Physiological raw data from Common reef-building coral in the Northern Red Sea resistant to elevated temperature and acidification.

description: Coral reefs are currently experiencing substantial ecological impoverishment as a result of anthropogenic stressors and the majority of reefs are facing immediate risk. Increasing ocean surface temperatures induce frequent coral mass bleaching events—the breakdown of the nutritional photo-symbiosis with intracellular algae (genus: <i>Symbiodinium</i>). Here, we report that <i>Stylophora pistillata</i> from a highly diverse reef in the Gulf of Aqaba showed no signs of bleaching despite spending 1.5 months at 1–2°C above their long-term summer maximum (amounting to 11 degree heating weeks) and a seawater pH of 7.8. Instead, their symbiotic dinoflagellates exhibited improved photochemistry, higher pigmentation and a doubling in net oxygen production, leading to a 51% increase in primary productivity. Nanoscale secondary ion mass spectrometry imaging revealed subtle cellular-level shifts in carbon and nitrogen metabolism under elevated temperatures, but overall host and symbiont biomass proxies were not significantly affected. Now living well below their thermal threshold in the Gulf of Aqaba, these corals have been evolutionary selected for heat tolerance during their migration through the warm Southern Red Sea after the last ice age. This may allow them to withstand future warming for a longer period of time, provided that successful environmental conservation measures are enacted across national boundaries in the region.
DOI: 10.6084/m9.figshare.4884389.v1
title: Table S5. Physiological raw data from Common reef-building coral in the Northern Red Sea resistant to elevated temperature and acidification

description: Coral reefs are currently experiencing substantial ecological impoverishment as a result of anthropogenic stressors and the majority of reefs are facing immediate risk. Increasing ocean surface temperatures induce frequent coral mass bleaching events—the breakdown of the nutritional photo-symbiosis with intracellular algae (genus: <i>Symbiodinium</i>). Here, we report that <i>Stylophora pistillata</i> from a highly diverse reef in the Gulf of Aqaba showed no signs of bleaching despite spending 1.5 months at 1–2°C above their long-term summer maximum (amounting to 11 degree heating weeks) and a seawater pH of 7.8. Instead, their symbiotic dinoflagellates exhibited improved photochemistry, higher pigmentation and a doubling in net oxygen production, leading to a 51% increase in primary productivity. Nanoscale secondary ion mass spectrometry imaging revealed subtle cellular-level shifts in carbon and nitrogen metabolism under elevated temperatures, but overall host and symbiont biomass proxies were not significantly affected. Now living well below their thermal threshold in the Gulf of Aqaba, these corals have been evolutionary selected for heat tolerance during their migration through the warm Southern Red Sea after the last ice age. This may allow them to withstand future warming for a longer period of time, provided that successful environmental conservation measures are enacted across national boundaries in the region.
DOI: 10.6084/m9.figshare.5028428
title: Data supplement from Injury-mediated decrease in locomotor performance increases predation risk in schooling fish.

description: The costs and benefits of group living often depend on the spatial position of individuals within groups and the ability of individuals to occupy preferred positions. For example, models of predation events for moving prey groups predict higher mortality risk for individuals at the periphery and front of groups. We investigated these predictions in sardine (<i>Sardinella aurita</i>) schools under attack from group hunting sailfish (<i>Istiophorus platypterus</i>) in the open ocean. Sailfish approached sardine schools about equally often from the front and rear, but prior to attack there was a chasing period in which sardines attempted to swim away from the predator. Consequently, all sailfish attacks were directed at the rear and peripheral positions of the school, resulting in higher predation risk for individuals at these positions. During attacks, sailfish slash at sardines with their bill causing prey injury including scale removal and tissue damage. Sardines injured in previous attacks were more often found in the rear half of the school than in the front half. Moreover, injured fish had lower tail-beat frequencies and lagged behind uninjured fish. Injuries inflicted by sailfish bills may, therefore, hinder prey swimming speed and drive spatial sorting in prey schools through passive self-assortment. We found only partial support for the theoretical predictions from current predator–prey models, highlighting the importance of incorporating more realistic predator–prey dynamics into these models.This article is part of the themed issue ‘Physiological determinants of social behaviour in animals’.
DOI: 10.6084/m9.figshare.5028464
title: Statistical code from Injury-mediated decrease in locomotor performance increases predation risk in schooling fish.

description: The costs and benefits of group living often depend on the spatial position of individuals within groups and the ability of individuals to occupy preferred positions. For example, models of predation events for moving prey groups predict higher mortality risk for individuals at the periphery and front of groups. We investigated these predictions in sardine (<i>Sardinella aurita</i>) schools under attack from group hunting sailfish (<i>Istiophorus platypterus</i>) in the open ocean. Sailfish approached sardine schools about equally often from the front and rear, but prior to attack there was a chasing period in which sardines attempted to swim away from the predator. Consequently, all sailfish attacks were directed at the rear and peripheral positions of the school, resulting in higher predation risk for individuals at these positions. During attacks, sailfish slash at sardines with their bill causing prey injury including scale removal and tissue damage. Sardines injured in previous attacks were more often found in the rear half of the school than in the front half. Moreover, injured fish had lower tail-beat frequencies and lagged behind uninjured fish. Injuries inflicted by sailfish bills may, therefore, hinder prey swimming speed and drive spatial sorting in prey schools through passive self-assortment. We found only partial support for the theoretical predictions from current predator–prey models, highlighting the importance of incorporating more realistic predator–prey dynamics into these models.This article is part of the themed issue ‘Physiological determinants of social behaviour in animals’.
DOI: 10.6084/m9.figshare.5028428.v2
title: Data supplement from Injury-mediated decrease in locomotor performance increases predation risk in schooling fish.

description: The costs and benefits of group living often depend on the spatial position of individuals within groups and the ability of individuals to occupy preferred positions. For example, models of predation events for moving prey groups predict higher mortality risk for individuals at the periphery and front of groups. We investigated these predictions in sardine (<i>Sardinella aurita</i>) schools under attack from group hunting sailfish (<i>Istiophorus platypterus</i>) in the open ocean. Sailfish approached sardine schools about equally often from the front and rear, but prior to attack there was a chasing period in which sardines attempted to swim away from the predator. Consequently, all sailfish attacks were directed at the rear and peripheral positions of the school, resulting in higher predation risk for individuals at these positions. During attacks, sailfish slash at sardines with their bill causing prey injury including scale removal and tissue damage. Sardines injured in previous attacks were more often found in the rear half of the school than in the front half. Moreover, injured fish had lower tail-beat frequencies and lagged behind uninjured fish. Injuries inflicted by sailfish bills may, therefore, hinder prey swimming speed and drive spatial sorting in prey schools through passive self-assortment. We found only partial support for the theoretical predictions from current predator–prey models, highlighting the importance of incorporating more realistic predator–prey dynamics into these models.This article is part of the themed issue ‘Physiological determinants of social behaviour in animals’.
DOI: 10.6084/m9.figshare.5028464.v2
title: Statistical code from Injury-mediated decrease in locomotor performance increases predation risk in schooling fish.

description: The costs and benefits of group living often depend on the spatial position of individuals within groups and the ability of individuals to occupy preferred positions. For example, models of predation events for moving prey groups predict higher mortality risk for individuals at the periphery and front of groups. We investigated these predictions in sardine (<i>Sardinella aurita</i>) schools under attack from group hunting sailfish (<i>Istiophorus platypterus</i>) in the open ocean. Sailfish approached sardine schools about equally often from the front and rear, but prior to attack there was a chasing period in which sardines attempted to swim away from the predator. Consequently, all sailfish attacks were directed at the rear and peripheral positions of the school, resulting in higher predation risk for individuals at these positions. During attacks, sailfish slash at sardines with their bill causing prey injury including scale removal and tissue damage. Sardines injured in previous attacks were more often found in the rear half of the school than in the front half. Moreover, injured fish had lower tail-beat frequencies and lagged behind uninjured fish. Injuries inflicted by sailfish bills may, therefore, hinder prey swimming speed and drive spatial sorting in prey schools through passive self-assortment. We found only partial support for the theoretical predictions from current predator–prey models, highlighting the importance of incorporating more realistic predator–prey dynamics into these models.This article is part of the themed issue ‘Physiological determinants of social behaviour in animals’.
DOI: 10.6084/m9.figshare.5028428.v1
title: Data supplement from Injury-mediated decrease in locomotor performance increases predation risk in schooling fish

description: The costs and benefits of group-living often depend on the spatial position of individuals within groups and the ability of individuals to occupy preferred positions. For example, models of predation events for moving prey groups predict higher mortality risk for individuals at the periphery and front of groups. We investigated these predictions in sardine (<i>Sardinella aurita</i>) schools under attack from group hunting sailfish (<i>Istiophorus platypterus</i>) in the open ocean. Sailfish approached sardine schools about equally often from the front and rear, but prior to attack there was a chasing period in which sardines attempted to swim away from the predator. Consequently, all sailfish attacks were directed at the rear and peripheral positions of the school, resulting in higher predation risk for individuals at these positions. During attacks, sailfish slash at sardines with their bill causing prey injury including scale removal and tissue damage. Sardines injured in previous attacks were more often found in the rear half of the school than in the front half. Moreover, injured fish had lower tail-beat frequencies and lagged behind uninjured fish. Injuries inflicted by sailfish bills may, therefore, hinder prey swimming speed and drive spatial sorting in prey schools through passive self-assortment. We found only partial support for the theoretical predictions from current predator–prey models, highlighting the importance of incorporating more realistic predator–prey dynamics into these models.This article is part of the themed issue ‘Physiological determinants of social behaviour in animals’.
DOI: 10.6084/m9.figshare.5028464.v1
title: Statistical code from Injury-mediated decrease in locomotor performance increases predation risk in schooling fish

description: The costs and benefits of group-living often depend on the spatial position of individuals within groups and the ability of individuals to occupy preferred positions. For example, models of predation events for moving prey groups predict higher mortality risk for individuals at the periphery and front of groups. We investigated these predictions in sardine (<i>Sardinella aurita</i>) schools under attack from group hunting sailfish (<i>Istiophorus platypterus</i>) in the open ocean. Sailfish approached sardine schools about equally often from the front and rear, but prior to attack there was a chasing period in which sardines attempted to swim away from the predator. Consequently, all sailfish attacks were directed at the rear and peripheral positions of the school, resulting in higher predation risk for individuals at these positions. During attacks, sailfish slash at sardines with their bill causing prey injury including scale removal and tissue damage. Sardines injured in previous attacks were more often found in the rear half of the school than in the front half. Moreover, injured fish had lower tail-beat frequencies and lagged behind uninjured fish. Injuries inflicted by sailfish bills may, therefore, hinder prey swimming speed and drive spatial sorting in prey schools through passive self-assortment. We found only partial support for the theoretical predictions from current predator–prey models, highlighting the importance of incorporating more realistic predator–prey dynamics into these models.This article is part of the themed issue ‘Physiological determinants of social behaviour in animals’.
DOI: 10.6084/m9.figshare.5203054
title: Dataset S2. Body size of Lessepsian bivalves in their native and invaded range. from Climate change and body size shift in Mediterranean bivalve assemblages: unexpected role of biological invasions.

description: Body size data for Brachidontes pharaonis and Pinctada imbricata radiata from multiple sites across their native (Red Sea and NW Indian Ocean) and invaded range (Mediterranean Sea and Suez Canal).
DOI: 10.6084/m9.figshare.13102541
title: ArcGIS layers

description: Layers describing study area, Cranes Moor New Forest, including survey areas
DOI: 10.6084/m9.figshare.13102541.v1
title: ArcGIS layers

description: Layers describing study area, Cranes Moor New Forest, including survey areas
DOI: 10.6084/m9.figshare.5203063
title: Dataset S1. List of Red Sea and Mediterranean bivalve species used in the analyses. from Climate change and body size shift in Mediterranean bivalve assemblages: unexpected role of biological invasions.

description: List of bivalve species reported from shelf depths in the Mediterranean Sea and the Red Sea, their alien status in the Mediterranean, body size, and taxonomic and functional affiliation.
DOI: 10.6084/m9.figshare.5203063.v2
title: Dataset S1. List of Red Sea and Mediterranean bivalve species used in the analyses. from Climate change and body size shift in Mediterranean bivalve assemblages: unexpected role of biological invasions.

description: List of bivalve species reported from shelf depths in the Mediterranean Sea and the Red Sea, their alien status in the Mediterranean, body size, and taxonomic and functional affiliation.
DOI: 10.6084/m9.figshare.5203063.v1
title: Dataset S1. List of Red Sea and Mediterranean bivalve species used in the analyses. from Climate change and body size shift in Mediterranean bivalve assemblages: unexpected role of biological invasions

description: List of bivalve species reported from shelf depths in the Mediterranean Sea and the Red Sea, their alien status in the Mediterranean, body size, and taxonomic and functional affiliation.
DOI: 10.6084/m9.figshare.5203096
title: Data Supplement from Is meiosis a fundamental cause of inviability among sexual and asexual plants and animals?.

description: Data used, sources, and notes on each contrast
DOI: 10.6084/m9.figshare.5203096.v2
title: Data Supplement from Is meiosis a fundamental cause of inviability among sexual and asexual plants and animals?.

description: Data used, sources, and notes on each contrast
DOI: 10.6084/m9.figshare.5203096.v1
title: Data Supplement from Is meiosis a fundamental cause of inviability among sexual and asexual plants and animals?

description: Data used, sources, and notes on each contrast
DOI: 10.6084/m9.figshare.5203189
title: Data file 1 from Increased SBPase activity improves photosynthesis and grain yield in wheat grown in greenhouse conditions.

description: The raw data output from the Licor 6400 for results presented in Figure 3.
DOI: 10.6084/m9.figshare.5203135
title: Data file 2 from Increased SBPase activity improves photosynthesis and grain yield in wheat grown in greenhouse conditions.

description: Calculation of Vcmax and Jmax using the data presented in Figure 3.
DOI: 10.6084/m9.figshare.5203189.v2
title: Data file 1 from Increased SBPase activity improves photosynthesis and grain yield in wheat grown in greenhouse conditions.

description: The raw data output from the Licor 6400 for results presented in Figure 3.
DOI: 10.6084/m9.figshare.5203135.v2
title: Data file 2 from Increased SBPase activity improves photosynthesis and grain yield in wheat grown in greenhouse conditions.

description: Calculation of Vcmax and Jmax using the data presented in Figure 3.
DOI: 10.6084/m9.figshare.5203189.v1
title: Data file 1 from Increased SBPase activity improves photosynthesis and grain yield in wheat grown in greenhouse conditions

description: The raw data output from the Licor 6400 for results presented in Figure 3.
DOI: 10.6084/m9.figshare.5203135.v1
title: Data file 2 from Increased SBPase activity improves photosynthesis and grain yield in wheat grown in greenhouse conditions

description: Calculation of Vcmax and Jmax using the data presented in Figure 3.
DOI: 10.6084/m9.figshare.5203201
title: Data file 5 from Increased SBPase activity improves photosynthesis and grain yield in wheat grown in greenhouse conditions.

description: To meet the growing demand for food, substantial improvements in yields are needed. This is particularly the case for wheat, where global yield has stagnated in recent years. Increasing photosynthesis has been identified as a primary target to achieve yield improvements. To increase leaf photosynthesis in wheat, the level of the Calvin–Benson cycle enzyme sedoheptulose-1,7-biphosphatase (SBPase) has been increased through transformation and expression of a <i>Brachypodium dystachion</i> SBPase gene construct. Transgenic lines with increased SBPase protein levels and activity were grown under greenhouse conditions and showed enhanced leaf photosynthesis and increased total biomass and dry seed yield. This showed the potential of improving yield potential by increasing leaf photosynthesis in a crop species such as wheat. The results are discussed with regards to future strategies for further improvement of photosynthesis in wheat.This article is part of the themed issue ‘Enhancing photosynthesis in crop plants: targets for improvement’.
DOI: 10.6084/m9.figshare.5203237
title: Data file 3 from Increased SBPase activity improves photosynthesis and grain yield in wheat grown in greenhouse conditions.

description: The raw data output from the Licor 6400 for results presented in Figure 4.
DOI: 10.6084/m9.figshare.5203258
title: Data file 4 from Increased SBPase activity improves photosynthesis and grain yield in wheat grown in greenhouse conditions.

description: Calculation of Vcmax and Jmax using the data presented in Figure 3.
DOI: 10.6084/m9.figshare.5203201.v2
title: Data file 5 from Increased SBPase activity improves photosynthesis and grain yield in wheat grown in greenhouse conditions.

description: To meet the growing demand for food, substantial improvements in yields are needed. This is particularly the case for wheat, where global yield has stagnated in recent years. Increasing photosynthesis has been identified as a primary target to achieve yield improvements. To increase leaf photosynthesis in wheat, the level of the Calvin–Benson cycle enzyme sedoheptulose-1,7-biphosphatase (SBPase) has been increased through transformation and expression of a <i>Brachypodium dystachion</i> SBPase gene construct. Transgenic lines with increased SBPase protein levels and activity were grown under greenhouse conditions and showed enhanced leaf photosynthesis and increased total biomass and dry seed yield. This showed the potential of improving yield potential by increasing leaf photosynthesis in a crop species such as wheat. The results are discussed with regards to future strategies for further improvement of photosynthesis in wheat.This article is part of the themed issue ‘Enhancing photosynthesis in crop plants: targets for improvement’.