cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26202329.v1
title: Zn(DMP)2-data.zip

description: Data used in the research paper titled "<b>Assessing the Potential of Non-pyrophoric Zn(DMP)</b><sub><strong>2</strong></sub><b> </b><b>for the Fast Deposition of ZnO Functional Coatings by Spatial Atomic Layer Deposition</b>"
DOI: 10.17632/d8z2jz89jb
title: Variations in Asian summer monsoon and hydroclimate during Heinrich Stadials 3 revealed by stalagmite from central China

description: Stalagmite YX350 delta18O and delta 13C sequences from Yongxing Cave ,central China
DOI: 10.17632/s96kd597gr
title: Raw_data_supplementary_Regeneration in calcareous sponge relies on ‘purse-string’ mechanism and the rearrangements of actin cytoskeleton

description: Raw images from manuscript's supplemenraty files. Fixation method (if used) is stated as well as applied immunostaining. 

The crucial step in any regeneration process is epithelization, i.e. the restoration of epithelium structural and functional integrity. Epithelialization requires cytoskeletal rearrangements, primarily of actin filaments and microtubules. Sponges (phylum Porifera) are early branching metazoans with pronounced regenerative abilities. Calcareous sponges have a unique step during regeneration: formation of a temporary structure, regenerative membrane which initially covers a wound. It forms due to the morphallactic rearrangements of exopinaco- and choanoderm epithelial-like layers. The current study quantitatively evaluates morphological changes and characterises underlying actin cytoskeleton rearrangements during regenerative membrane formation in asconoid calcareous sponge Leucosolenia variabilis, through a combination of time-lapse imaging, immunocytochemistry, and confocal laser scanning microscopy. Regenerative membrane formation has non-linear stochastic dynamics with numerous fluctuations. The pinacocytes at the leading edge of regenerative membrane form a contractile actomyosin cable. Regenerative membrane formation either depend on its contraction or being coordinated through it. The cell morphology changes significantly during regenerative membrane formation. Exopinacocytes flatten, their area increases, while circularity decreases. Choanocytes transdifferentiate into endopinacocytes, losing microvilli collar and flagellum. Their area increases and circularity decreases. Subsequent redifferentiation of endopinacocytes into choanocytes is accompanied by inverse changes in cell morphology. All transformations are based on actin filament rearrangements similar to those characteristic of bilaterian animals. Altogether, we provide here a qualitative and quantitative description of cell transformations during reparative epithelial morphogenesis in a calcareous sponge.
DOI: 10.6084/m9.figshare.6275219.v1
title: Supplementary Material for: Modulation of Gamma Band Activity and Late Positive Potential in Patients with Chronic Depression after Psychodynamic Psychotherapy

description: Medicine
DOI: 10.6084/m9.figshare.21026770.v3
title: 7-meter records in Danish and Norwegian handball

description: The 7-meter records of all 7-meter shooters in the Danish and Norwegian elite divisions (male and female) from 2015-2023
DOI: 10.6084/m9.figshare.5514016.v1
title: Supplementary Material for: Endoplasmic Reticulum Stress Is Involved in Cochlear Cell Apoptosis in a Cisplatin-Induced Ototoxicity Rat Model

description: Endoplasmic reticulum (ER) stress arises when excessive improperly folded proteins accumulate in the ER lumen. When ER stress occurs, the unfolded protein response (UPR) is subsequently activated to restore ER proteostasis. However, severe ER stress leads to apoptosis. Recent studies have suggested that cisplatin cytotoxicity may be related to ER stress. The purpose of this study was to determine whether ER stress participates in cochlear cell apoptosis in a cisplatin-induced ototoxicity rat model and to also determine the possible relationship between ER stress and hearing loss. Our results revealed that treatment with cisplatin upregulated the expression of active caspase-12 in cochlear cells, which is indicative of cisplatin-induced activation of ER-specific apoptosis. Increased expression of C/EBP homologous protein (CHOP) and cleaved caspase-9 suggested a close relationship between severe ER stress and mitochondria-dependent apoptosis in the cochlear cells of cisplatin-treated rats. In addition, we found that tauroursodeoxycholic acid (TUDCA), a promoter of ER proteostasis, had a protective effect on cisplatin-induced hearing loss. These results demonstrate that ER stress is involved in the cisplatin-induced apoptosis of cochlear cells in vivo.
DOI: 10.17632/5m93twdgwv
title: Data for: Voice Disorders are Associated with Stress among Teachers: A Cross-Sectional Study

description: Addressed the concerns of the reviewers, we have included the questionnaire that was used for the study.
DOI: 10.6084/m9.figshare.23289734.v1
title: Web of science data

description: Data exported from the web of science database.
DOI: 10.6084/m9.figshare.21435660.v2
title: Investigation of the sealing performance of the gearbox sealing system of high-speed trains

description: Investigation of the sealing performance of the gearbox sealing system of high-speed trains-data
DOI: 10.6084/m9.figshare.22766783.v1
title: <strong>Longitudinal monitoring of Apparent diffusion coefficient (ADC) changes in head and neck cancer patients</strong>

description: In this study, our objective was to analyze and describe the sequential quantitative changes in diffusion-weighted imaging (DWI) of primary tumors and nodal target volumes in a preliminary group of patients with head and neck squamous cell carcinoma (HNSCC) who underwent treatment using the MR-Linac system. Following the principles of the R-IDEAL framework, our study falls under Stage 2a. This investigation provides a unique opportunity to assess DWI measurements acquired throughout the entire radiotherapy (RT) course, enabling us to quantify changes in apparent diffusion coefficient (ADC) on a weekly basis. Additionally, we aimed to establish correlations between these observed changes and the patients' response to RT as well as subsequent oncologic outcomes
DOI: 10.6084/m9.figshare.24647598.v1
title: A high-throughput workflow for accurate exploitation of sex-specific markers: a case study on <i>Oplegnathus fasciatus</i>

description: The development of next-generation sequencing technology allowed the rapid exploitation of markers for genetic sex identification. Using male-female linear genomic information combined with Illumina survey and PacBio continuous long read (CLR) / circular consensus sequence (CCS) data, a database of large-segment (&gt;100 bp) insertion‒deletion genetic variants was constructed using a genome-wide variant site scanning method with bidirectional comparisons.
DOI: 10.6084/m9.figshare.26459395.v1
title: Resources for bibliometric review into groundwater-surface water interactions research by Irvine et al.

description: Outputs from a bibliometric analysis of groundwater-surface water interactions research. The work is under review at the time of upload.
DOI: 10.6084/m9.figshare.9742184.v1
title: Supplementary Material for: Regression of Periocular Basal Cell Carcinoma: A Report of Four Cases with Clinicopathologic Correlation

description: <b><i>Objectives:</i></b> To describe the spectrum of clinical and histopathological features of a case series of basal cell carcinoma (BCC) with spontaneous regression and to discuss this phenomenon. <b><i>Method:</i></b> Four cases of BCC with complete/substantial regression were retrospectively identified. Patients’ records were analyzed for demographic data, clinical appearance, and the postoperative course. Formalin-fixed, paraffin-embedded specimens were routinely processed and stained with hematoxylin and eosin and periodic acid Schiff. <b><i>Results:</i></b> Complete (<i>n</i> = 1) or partial (<i>n</i> = 3) regression of BCC was observed in 4 patients. Two lesions at the medial canthus were histologically diagnosed as nodular BCC with significant regression. One lesion at the lower eyelid exhibited a complete regression which did not require surgical intervention. The other lesion at the lower eyelid presenting with ulceration and madarosis was excised. Scar tissue without evidence for a neoplasm was present histologically. Subsequently, the patient developed a recurrence with a histologically proven micronodular BCC. <b><i>Conclusions:</i></b> BCC can show spontaneous substantial or complete regression. Histological tumor absence in lesions which are clinically suspicious for a neoplasm can be a hint for a regressive BCC. Recurrences may develop from remaining tumor islands warranting periodical clinical visits in cases of clinically as well as histologically suspected regressive BCC.
DOI: 10.6084/m9.figshare.25046024.v1
title: Data of quasi-experiment

description: We designed a series of inquiry activities with the support of scaffolding, and we investigated their impact on the development of selected inquiry skills among pupils. We carried out the research on 416 pupils of different primary schools who participated in a quasi-experiment. Pupils in the experimental group conducted biology inquiry activities with the support of scaffolding aimed at developing selected inquiry skills. The research also included self-assessment cards, in which pupils had to assess their level of acquired inquiry skills. Pupils in the control group were taught these topics in traditional way including practical activities based on the "cookbook" approach.
DOI: 10.6084/m9.figshare.3527345.v1
title: Appendix E. Statistical tables for regression analyses regarding effects of latitude and annual rainfall on endophyte incidence and diversity.

description: Statistical tables for regression analyses regarding effects of latitude and annual rainfall on endophyte incidence and diversity.
DOI: 10.6084/m9.figshare.24953457.v1
title: Data set from 252 respondent

description: This data contains 252 respondent from Indonesia
DOI: 10.6084/m9.figshare.25858165.v1
title: Supplementary Material for: The inflammatory response induced by Aspergillus fumigatus conidia is dependent on complement activation - Insight from a whole blood model

description: Introduction: We aimed to elucidate the inflammatory response of Aspergillus fumigatus conidia in a whole-blood model of innate immune activation and to compare it with the well-characterized inflammatory reaction to E. coli.

Methods: Employing a human lepirudin whole-blood model, we analyzed complement and leukocyte activation by measuring the sC5b-9 complex and assessing CD11b expression. A 27-multiplex system was used for quantification of cytokines. Selective cell removal from whole blood and inhibition of C3, C5, and CD14 were also applied.

Results: Our findings demonstrated a marked elevation in sC5b-9 and CD11b post-A. fumigatus incubation. Thirteen cytokines (TNF, IL-1β, IL-1ra, IL-4, IL-6, IL-8, IL-17, IFNγ, MCP-1, MIP-1α, MIP-1β, FGF-basic, and G-CSF) showed increased levels. A generally lower level of cytokine release and CD11b expression was observed with A. fumigatus conidia than with E. coli. Notably, monocytes were instrumental in releasing all cytokines except MCP-1. IL-1ra was found to be both monocyte and granulocyte-dependent. Pre-inhibiting with C3 and CD14 inhibitors resulted in decreased release patterns for six cytokines (TNF, IL-1β, IL-6, IL-8, MIP-1α and MIP-1β), with minimal effects by C5-inhibition. 

Conclusion: A. fumigatus conidia induced complement activation comparable to E. coli, whereas CD11b expression and cytokine release were lower, underscoring distinct inflammatory responses between these pathogens. Complement C3 inhibition attenuated cytokine release indicating a C3-level role of complement in A. fumigatus immunity.
DOI: 10.6084/m9.figshare.5202451.v1
title: Bangladesh Field RNA-Seq samples - July, 2017

description: Short sequence reads obtained from RNA extracted from wheat leaf blades from fields infected with wheat blast fungus in Bangladesh during the 2017 epidemics. The reads were obtained using Illumina RNA-seq technology. Library preparation and sequencing runs were performed on Illumina HiSeq-2500 machines. They are paired-end reads with ~267 bp average insert size.
DOI: 10.6084/m9.figshare.7763528.v4
title: Collision-Free Advertisement Scheduling for IEEE802.15.4-TSCH Networks

description: Simulation Results
DOI: 10.6084/m9.figshare.20309970.v1
title: Supplementary Material for: Interstitial Pulmonary Fibrosis and Extensive Dendriform Ossification with Persistent Viral Load: A Rare Presentation of Post-COVID-19 Condition in Need of Lung Transplantation

description: The incidence, presentation, and predisposing factors of post-acute sequelae of COVID-19 (PASC) are currently poorly understood. Lung explants may provide a rare insight into terminal SARS-CoV-2-associated lung damage and its pathophysiology. A 62-year-old man presented with progressively worsening respiratory symptoms after recovering from mild COVID-19 3 months earlier. No underlying pulmonary comorbidities were reported. A chest CT revealed bilateral extensive ground-glass and reticular opacities, suspicious of pulmonary fibrosis. Despite initial high-dose glucocorticoid therapy, the interstitial lung disease progressed, and after exhausting all viable therapeutic options, bilateral lung transplantation was successfully conducted. Histological analysis revealed extensive end-stage interstitial fibrosis with diffuse dendriform ossification and bronchiolar and transitional cell metaplasia. Signs of interstitial remodeling such as an increased interstitial collagen deposition, a pathological accumulation of CD163+/CD206+ M2-polarized macrophages with an increased expression of phosphorylated ERK, and an increased density of CD105+ newly formed capillaries were observed. qRT-PCR and immunohistochemistry for SARS-CoV-2 N-protein in the endothelium of medium-sized vessels confirmed a persistence of SARS-CoV-2. Our findings highlight a highly unusual presentation of SARS-CoV-2-associated lung fibrosis, implying that incomplete viral clearance in the vascular compartment may play a vital pathophysiological role in the development of PASC.
DOI: 10.6084/m9.figshare.12122973.v1
title: Supplementary Material for: Seasonal Variation in Activity Budget of Assamese Macaques in Limestone Forest of Southwest Guangxi, China

description: The activity budget is important for understanding behavioural variability and adaptation in primates. Assamese macaques (<i>Macaca assamensis</i>) found in the limestone forest of Guangxi Nonggang National Nature Reserve, Southwest China, primarily feed on young leaves of <i>Bonia saxatilis</i> (a shrubby, karst-endemic bamboo). To understand how a specific bamboo leaf-based diet and ecological factors affect activity budget, one group of Assamese macaques was studied using instantaneous scan sampling for 1 year. The macaques spent most of their time feeding (32.7 ± 5.4%), followed by resting (28.6 ± 6.3%), moving (28.6 ± 5.3%), grooming (8.0 ± 3.0%), playing (1.7 ± 1.6%) and other activities (0.4 ± 0.2%). Their activity budget was similar to that of typical frugivorous primates and bamboo-dominated primates, which spent more time on active behaviours (feeding and moving, 61.3 ± 6.0%) than on inactive behaviours (resting and grooming, 36.6 ± 6.4%). The macaques spent significantly more time resting during the fruit-lean season and more time moving during the fruit-rich season. Their activity budget was significantly affected by diet. Resting time increased with decreased fruit consumption, whereas moving time decreased with the increasing mature leaf consumption. Playing time decreased when the macaques consumed more young bamboo leaves. The activity budget was also influenced by food availability and climatic factors. Resting time increased with decreasing temperature, whereas moving time increased with increasing day length and young leaf availability. Grooming time increased with decreasing day length and increasing temperature, and playing time increased with increasing day length. Our findings provide evidence of the importance of diet, food availability, temperature and day length in coping with seasonal variation in ecological factors, highlighting the need to increase knowledge of the behavioural ecology of the Assamese macaques living in the unique limestone forest and to understand the influence of a bamboo-dominated diet and ecological factors on their survival.
DOI: 10.6084/m9.figshare.12672038.v1
title: Revised MD17 dataset (rMD17)

description: THE REVISED MD17 dataset:<br>=========================<br><br><br>Citation:<br>========<br><br> Anders S. Christensen and O. Anatole von Lilienfeld (2020) "On the role of gradients for machine learning of molecular energies and forces" arXiv:?????<br><br>The molecules are taken from the original MD17 dataset by Chmiela et al., and 100,000 structures are taken, and the energies and forces are recalculated at the PBE/def2-SVP level of theory using very tight SCF convergence and very dense DFT integration grid. As such, the dataset is practically free from nummerical noise. <br><br><br>One warning: As the structures are taken from a molecular dynamics simulation (i.e. time series data), they are not guaranteed to be independent samples. This is easily evident from the autocorrelation function for the original MD17 dataset<br><br>In short: DO NOT train a model on more than 1000 samples from this dataset. Data already published with 50K samples on the original MD17 dataset should be considered meaningless due to this fact and due to the noise in the original data.<br><br><br>The data:<br>=========<br><br>The ten molecules are save in Numpy .npz format.<br><br>The keys correspond to:<br><br>'nuclear_charges' : The nuclear charges for the molecule<br>'coords' : The coordinates for each conformation (in units of Ångstrom)<br>'energies' : The total energy of each conformation (in units of Hartree)<br>'forces' : The cartesian gradient of each conformation (in units of Hartree/Bohr)<br>'old_indices' : The index of each conformation in the original MD17 dataset<br>'old_energies' : The energy of each conformation taken from the original MD17 dataset (in units of kcal/mol)<br>'old_forces' : The forces of each conformation taken from the original MD17 dataset (in units of kcal/mol/Ångstrom)<br><br>*Note that for Azobenzene, only 99988 samples are available due to 11 failed DFT calculations due to van der Walls clash, and the original dataset only contained 99999 structures.<br><br><br>Data splits:<br>============<br>Five training and test splits are saved in CSV format containing the corresponding indices.<br><br>
DOI: 10.6084/m9.figshare.28829429.v1
title: Yarn instance segmentation of the BNCFRPs (COCO2017 standard dataset)

description: This dataset is a custom dataset made in accordance with the COCO2017 standard for training XCT images of biaxial non-crimp Fabric-reinforced polymer composites with different degrees of damage
DOI: 10.6084/m9.figshare.3517583.v1
title: Appendix F. Plots of residual error incorporated into the stable-isotope mixing model.

description: Plots of residual error incorporated into the stable-isotope mixing model.
DOI: 10.6084/m9.figshare.24495004.v1
title: <b>Identifying road surface condition in a </b><b>national</b><b>-scale road network with multi-sourced open datasets</b>

description: Nigeria road surface condition
DOI: 10.17632/h6v6tv66yw
title: Data and Code for: Trade-Induced Displacements and Local Labor Market Adjustments in the U.S.
DOI: 10.17632/w7p3stdwk2
title: Composition and ecology of an anuran taxocenosis at Itinguçu State Park, Peruíbe-SP – What has changed 30 years later?

description: Supplementary material - Table 1 – Species data collected on each monitoring day.
Supplementary material - Table 2 – Species recorded by environment category.
Supplementary material - Table 3 – Record number of anurans species collected in Itinguçu State Park, Peruíbe-SP between April 26, 2022, and February 10, 2023, and deposited in the Zoological Collection of the Herpetology Laboratory (LHERP) of the State University of São Paulo, São Vicente-SP (UNESP-CLP).
DOI: 10.6084/m9.figshare.21836196.v3
title: A 10-m resolution impervious surface area map for the greater Mekong subregion from multisource remote sensing images

description: Here, the 2016-2022 impervious surface area map exclusively for the greater Mekong subregion is prepared. We present a novel machine-learning framework implemented on the Google Earth Engine platform that merges Sentinel-1 Synthetic Aperture Radar images and Sentinel-2 Multispectral images to extract impervious surface area. Furthermore, we also introduce a training sample migration strategy that eliminates the need for collecting additional training samples and automates multi-temporal impervious surface area mapping. Finally, we perform a quantitative assessment with validation samples interpreted from Google Earth. Results show that the overall accuracy and kappa coefficient of the final impervious surface area maps range from 93.67% to 93.75% and 0.872 to 0.873, respectively. This dataset provides comprehensive measurements of impervious surface coverage and configuration that will help to inform urban ecological studies. <br> The impervious surface map includes three sets of files: (1) the map data in GEOTIFF format, (2) the distribution of the tiles in shapefile format, and (3) the thumbnails of the dataset in JPEG format. This dataset can be viewed and processed with geographic information and remote sensing software, programming packages, and cloud platforms such as ArcGIS, QGIS, ENVI, GDAL, and GEE.
DOI: 10.17632/jntmjf34cw
title: Replication files for Gu and Hale "Climate Risks and FDI" (JIE 2023)

description: This documentation provides replication information for all the main results reported in Gu and Hale (2023). Replication les for the online appendix and non-reported robustness tests are available
upon request.
This documentation is organized by the aggregation level of the analysis in the paper. Country and country-industry level analysis is based on publicly available sources, thus both data and code
files are shared. The firm-level analysis is based on proprietary ORBIS data, which cannot be shared. The ORBIS data was accessed through the NBER-ORBIS contract and the file names in
the codes correspond to the data as it is processed by the NBER. For this analysis, we provide a full guide of how one with access to the data can replicate the results using the code files provided.
Most analysis is conducted using Stata which takes in .dta data files and .do files. One figure is produced using Python code for which the Jupiter Notebook-formatted file is shared.
DOI: 10.6084/m9.figshare.1360202.v1
title: CARTA INTERNACIONAL DO MUNDO AO MILIONÉSIMO - CIM - ÍNDICE DE NOMENCLATURA E ARTICULAÇÃO DE FOLHAS

description: Este índice tem origem nas folhas ao Milionésimo, e se aplica a denominação de todas as folhas de cartas do <strong>mapeamento sistemático</strong> (escalas de 1:1.000.000, 1:500.000, 1:250.000, 1:100.000, 1:50.000 e 1:25.000).