cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/1n1x7-mwh83
title: Campylobacter jejuni

description: Session notes: High magnification tomograms of whole WT Campylobacter cells. Tilt series notes: WT Campylobacter Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-02-16</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-16-44/rawdata/</p>11feb16a_WTCampy_146.mrc,  Tilt Series (Pixel Size 0.512 nm), 989.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-16-44/rawdata/11feb16a_WTCampy_146.mrc"
        > <i class="download icon"></i> Download </a></p>

        11feb16a_WTCampy_146_SIRT.rec,  Reconstruction (Pixel Size 0.512 nm), 216.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-16-44/3dimage_21447/11feb16a_WTCampy_146_SIRT.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/b10qt-sa804
title: Campylobacter jejuni

description: Session notes:  Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-07-15</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.5°, 64.5°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-07-15-3/rawdata/</p>11jul15a_flgQ_0005.st,  Tilt Series (Pixel Size 0.512 nm), 726.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-07-15-3/rawdata/11jul15a_flgQ_0005.st"
        > <i class="download icon"></i> Download </a></p>

        11jul15a_flgQ_0005.rec,  Reconstruction (Pixel Size 1.024 nm), 64.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-07-15-3/3dimage_22847/11jul15a_flgQ_0005.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/2cyv9-k5b27
title: Campylobacter jejuni

description: Session notes: Campylobacter cjj0996 cells, automatically reconstructed using SIRT, golds erased, binned 2x, filtered 0.28, 0.025 (to ~5.5nm resolution) Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-04-20</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-04-20-6/rawdata/</p>12apr20a_cjj0996_0010.st,  Tilt Series (Pixel Size 0.774 nm), 743.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-04-20-6/rawdata/12apr20a_cjj0996_0010.st"
        > <i class="download icon"></i> Download </a></p>

        12apr20a_cjj0996_0010.rec,  Reconstruction (Pixel Size 1.56 nm), 8.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-04-20-6/3dimage_22885/12apr20a_cjj0996_0010.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/jp1je-cs525
title: Salmonella typhimurium

description: Session notes: WT Salmonella minicell-producing strain, 5x conc. Tilt series notes: Small minicell Tomogram notes: SIRT reconstruction
description: <strong>Tilt Series Date:</strong> 2011-03-02</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-70.0°, 70.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-03-02-5/rawdata/</p>11mar02a_WTMinicells_026.st,  Tilt Series (Pixel Size 0.774 nm), 738.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-03-02-5/rawdata/11mar02a_WTMinicells_026.st"
        > <i class="download icon"></i> Download </a></p>

        11mar02a_WTMinicells_026_bin1x_SIRT.rec,  Reconstruction (Pixel Size 0.774 nm), 2.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-03-02-5/3dimage_21759/11mar02a_WTMinicells_026_bin1x_SIRT.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.60707/38s2-9s59
title: X-ray CT data for Bennu particle OREX-800157-0
DOI: 10.22002/59172-zdf29
title: Campylobacter jejuni

description: Session notes: flgP deletion Campy mutants Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-08-10</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: -1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-08-10-4/rawdata/</p>11aug10a_flgP_0008.mrc,  Tilt Series (Pixel Size 0.512 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-08-10-4/rawdata/11aug10a_flgP_0008.mrc"
        > <i class="download icon"></i> Download </a></p>

        11aug10a_flgP_0008_bin2x_SIRT_trim.rec,  Reconstruction (Pixel Size 1.036 nm), 86.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-08-10-4/3dimage_21745/11aug10a_flgP_0008_bin2x_SIRT_trim.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.6084/m9.figshare.27998597.v4
title: Mycobacterial EsxG·EsxH (TB9.8·TB10.4) peptides as a subunit vaccine to booster BCG vaccination in an experimental model of pulmonary Tuberculosis

description: The attenuated <i>Mycobacterium bovis</i> bacillus Calmette-Guérin (BCG) vaccine is currently the only validated vaccine against tuberculosis (TB). In a previous study, we conducted an <i>in-silico</i> selection of four peptides (G1, G2, H1, and H2) derived from the mycobacterial protein antigens TB10.9·TB10.4 (EsxG·EsxH). Bioinformatic analysis and molecular dynamic simulations predicted these epitopes could be loaded into a MHC-II complex, inducing T and B cell activation. The present study aimed to experimentally validate these peptides as subunit vaccines by determining their cytotoxicity, immunogenicity, and protective efficacy against <i>Mycobacterium tuberculosis</i> (Mtb) in mice when administered as a booster to BCG vaccination. Mice were vaccinated with BCG and, two months later, were subcutaneously immunized with either peptide G1, G2, H1, or H2. One-month post-immunization, mice were challenged with the reference strain H37Rv of moderate virulence or the hypervirulent clinical isolate 09005186. After vaccination and before the challenge, the spleen and lung cells were harvested and stimulated <i>in vitro</i> with the corresponding peptide to measure cytokine expression in CD4<sup>+</sup>, and CD8<sup>+</sup> T cells, as well as the phenotypes of activated effector T cells, proliferative senescence, central and periphery memory CD4<sup>+</sup> and CD8<sup>+</sup> cells. Additionally, specific IgG antibody titers elicited by each peptide were measured using ELISA. Compared with animals vaccinated only with BCG, boosting BCG vaccination with these peptides provided enhanced protection by significantly prolonging the mice survival, reducing the bacillary load, and decreasing tissue damage (pneumonia). These findings contribute to the broader understanding of peptide-based subunit vaccines and highlight the potential for tailored approaches to enhance protective immunity.
DOI: 10.22002/8veh2-6fh59
title: Salmonella typhimurium

description: Session notes: Salmonella minicells for fliL flagella, and T3SS. Auto-reconstructed to pixel size 5.18, then binned 2x further, low-pass filtered 0.33, 0.025; gold beads detected 24pix, erased 34pix. Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-03-20</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-03-20-1/rawdata/</p>12mar20b_fliL_0032.st,  Tilt Series (Pixel Size 20.136 nm), 743.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-03-20-1/rawdata/12mar20b_fliL_0032.st"
        > <i class="download icon"></i> Download </a></p>

        12mar20b_fliL_0032.rec,  Reconstruction (Pixel Size 1.036 nm), 61.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-03-20-1/3dimage_21903/12mar20b_fliL_0032.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/zz7v5-gtt84
title: Campylobacter jejuni

description: Session notes: flgP deletion Campy mutants Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-08-10</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: -1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-08-10-31/rawdata/</p>11aug10a_flgP_0039.mrc,  Tilt Series (Pixel Size 0.512 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-08-10-31/rawdata/11aug10a_flgP_0039.mrc"
        > <i class="download icon"></i> Download </a></p>

        11aug10a_flgP_0039_bin2x_SIRT_trim.rec,  Reconstruction (Pixel Size 1.024 nm), 22.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-08-10-31/3dimage_22027/11aug10a_flgP_0039_bin2x_SIRT_trim.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/tts73-a6931
title: Campylobacter jejuni

description: Session notes: Campy cjj0413, filtered 0.28,0.02 after binning to pixel size 1.56 nm (so, ~5.5nm cutoff) Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-01-12</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-01-12-13/rawdata/</p>12jan12a_cjj0413_0015.st,  Tilt Series (Pixel Size 0.774 nm), 743.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-01-12-13/rawdata/12jan12a_cjj0413_0015.st"
        > <i class="download icon"></i> Download </a></p>

        12jan12a_cjj0413_0015.rec,  Reconstruction (Pixel Size 0.78 nm), 105.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-01-12-13/3dimage_22531/12jan12a_cjj0413_0015.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.6ds9fa
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rumina decollata",
 "Country is Uruguay",
 "HasCoordinate is true"
 ]
}

 The dataset includes 36 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033277-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/d30x9-9k210
title: Campylobacter jejuni

description: Session notes: High magnification tomograms of whole WT Campylobacter cells. Tilt series notes: WT Campylobacter Tomogram notes: SIRT reconstruction
description: <strong>Tilt Series Date:</strong> 2011-02-16</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-16-165/rawdata/</p>11feb16a_WTCampy_079.st,  Tilt Series (Pixel Size 0.512 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-16-165/rawdata/11feb16a_WTCampy_079.st"
        > <i class="download icon"></i> Download </a></p>

        11feb16a_WTCampy_079_bin1x_SIRT.rec,  Reconstruction (Pixel Size 0.512 nm), 216.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-16-165/3dimage_21713/11feb16a_WTCampy_079_bin1x_SIRT.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/hf4e5-j9c56
title: Campylobacter jejuni

description: Session notes: Auto-reconstruct 0.28, 0.025, SIRT reconstruction, removed gold. Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-04-24</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-04-24-1/rawdata/</p>12apr24a_flgP_0001.st,  Tilt Series (Pixel Size 0.774 nm), 743.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-04-24-1/rawdata/12apr24a_flgP_0001.st"
        > <i class="download icon"></i> Download </a></p>

        12apr24a_flgP_0001.rec,  Reconstruction (Pixel Size 1.56 nm), 46.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-04-24-1/3dimage_22953/12apr24a_flgP_0001.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/mdvej-jc262
title: Project: storage_granules

description: Session notes: THIS IS A MIXTURE OF DIFFERENT SETTINGS! Tilt series notes: Large granules in an intact cell. Tomogram notes: Large granules
description: <strong>Tilt Series Date:</strong> 2009-04-07</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Cupriavidus necator</p>
<strong>Strain:</strong> H16</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-61.0°, 61.0°), step: 1°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2009-04-07-14/rawdata/</p>09apr07a_grid1_002.st,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2009-04-07-14/rawdata/09apr07a_grid1_002.st"
        > <i class="download icon"></i> Download </a></p>

        09apr07a_grid1_002.rec,  Reconstruction (Pixel Size 1.9 nm), 191.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2009-04-07-14/3dimage_8672/09apr07a_grid1_002.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/cgqqj-qvw91
title: Salmonella typhimurium

description: Session notes: Salmonella minicells for fliL flagella, and T3SS. Auto-reconstructed to pixel size 5.18, then binned 2x further, low-pass filtered 0.33, 0.025; gold beads detected 24pix, erased 34pix. Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-03-09</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-03-09-35/rawdata/</p>12mar09b_fliL_0035.st,  Tilt Series (Pixel Size 0.512 nm), 743.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-03-09-35/rawdata/12mar09b_fliL_0035.st"
        > <i class="download icon"></i> Download </a></p>

        12mar09b_fliL_0035.rec,  Reconstruction (Pixel Size 1.036 nm), 58.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-03-09-35/3dimage_22707/12mar09b_fliL_0035.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/jr573-92v46
title: Campylobacter jejuni

description: Session notes: Medium magnification tomograms of fliI knockout Campylobacter cells Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-04-12</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-04-12-34/rawdata/</p>11apr12a_fliI_026.st,  Tilt Series (Pixel Size 0.774 nm), 713.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-04-12-34/rawdata/11apr12a_fliI_026.st"
        > <i class="download icon"></i> Download </a></p>

        11apr12a_fliI_026.rec,  Reconstruction (Pixel Size 1.548 nm), 32.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-04-12-34/3dimage_22813/11apr12a_fliI_026.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/cyy1p-e6589
title: Salmonella typhimurium

description: Session notes: Test run of Salmonella rabbit ears  Tilt series notes: Cell tip with cytoplasm receding from end of sacculus. Multiple flagellar filaments. Tomogram notes:  Flagella:699,691,205 (Top view) Chemoreceptors:961,773,326 (Side view), 245,683,355 (Side view)
description: <strong>Tilt Series Date:</strong> 2010-02-26</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-61.0°, 61.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor3</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-02-26-9/rawdata/</p>10feb26b_salmonella_015.mrc,  Tilt Series (Pixel Size 0.632 nm), 687.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-02-26-9/rawdata/10feb26b_salmonella_015.mrc"
        > <i class="download icon"></i> Download </a></p>

        10feb26b_salmonella_015_full.rec,  Reconstruction (Pixel Size 1.264 nm), 524.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-02-26-9/3dimage_10505/10feb26b_salmonella_015_full.rec"
        > <i class="download icon"></i> Download </a></p>