cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20474034
title: Supplemental Data Table and Figures.xlsx

description: This is the supplemental figures and tables for "Metabolomic Interactions of Butyrate and Tumor Necrosis Factor α in Primary Rat Colonocytes – Implications for Hypertension" by C. Souders et al. 2022
DOI: 10.6084/m9.figshare.20474034.v2
title: Supplemental Data Table and Figures.xlsx

description: This is the supplemental figures and tables for "Metabolomic Interactions of Butyrate and Tumor Necrosis Factor α in Primary Rat Colonocytes – Implications for Hypertension" by C. Souders et al. 2022
DOI: 10.6084/m9.figshare.20474034.v1
title: Supplemental Data Table and Figures.xlsx

description: This is the supplemental figures and tables for "Metabolomic Interactions of Butyrate and Tumor Necrosis Factor α in Primary Rat Colonocytes – Implications for Hypertension" by C. Souders et al. 2022
DOI: 10.34740/kaggle/ds/2403176
title: Bellabeat case study project by Geetha
DOI: 10.6084/m9.figshare.19314455
title: Integrated evidence-based extent of occurrence for North American bison (Bison bison) since 1500 CE and before: dataset

description: Following the near extinction of bison (<em>Bison bison</em>) from its historic range across North America in late 19<sup>th</sup> century, novel bison conservation efforts in the early 20<sup>th</sup> century catalyzed a popular widespread conservation movement to protect and restore bison among other species and places. Since Allen’s initial delineation (1876) of the historic distribution of North American bison, subsequent attempts have been hampered by knowledge gaps about bison distribution and abundance previous to and following colonial arrival and settlement. For the first time, we apply a multi-disciplinary approach to assemble a comprehensive, integrated geographic database and meta-analysis of bison occurrences over the last 200,000 years BCE, with particular emphasis over the last 450 years before present. We combined paleontology, archaeology, and historical ecology data for our database totaling 6,438 observations. We derived the observations from existing online databases, published literature, and first-hand exploration journal entries. To illustrate the conservative maximum historical extent of occurrence of bison, we created a concave hull using observations occurring over the last 450 years (<em>n </em>= 3,379 observations) which is the broadly accepted historical benchmark at 1500 CE. While this distribution represents a historic extent of occurrence — merely delineating the maximum margins of the near-continental distribution — it does not replace a density-based approach reconstructing potential historical range distributions that identify core and marginal ranges. However, we envision the contained observations of this database will contribute to further research in the increasingly evidence-based disciplines of bison ecology, evolution, rewilding, management, and conservation.
DOI: 10.6084/m9.figshare.19314455.v1
title: Integrated evidence-based extent of occurrence for North American bison (Bison bison) since 1500 CE and before: dataset

description: Following the near extinction of bison (<em>Bison bison</em>) from its historic range across North America in late 19<sup>th</sup> century, novel bison conservation efforts in the early 20<sup>th</sup> century catalyzed a popular widespread conservation movement to protect and restore bison among other species and places. Since Allen’s initial delineation (1876) of the historic distribution of North American bison, subsequent attempts have been hampered by knowledge gaps about bison distribution and abundance previous to and following colonial arrival and settlement. For the first time, we apply a multi-disciplinary approach to assemble a comprehensive, integrated geographic database and meta-analysis of bison occurrences over the last 200,000 years BCE, with particular emphasis over the last 450 years before present. We combined paleontology, archeology, and historical ecology data for our database totaling 4,376 observations. We derived the observations from existing online databases, published literature, and first-hand exploration journal entries. To illustrate the conservative maximum extent of occurrence of bison, we created a concave hull using observations occurring over the last 450 years (<em>n </em>= 2,946 observations) which is the broadly accepted historical benchmark at 1500 CE. While this distribution represents a historical extent of occurrence — merely delineating the maximum margins of the near-continental distribution — it does not replace a density-based approach reconstructing potential historical range distributions that identify core and marginal ranges. However, we envision the contained observations of this database will contribute to further research in the increasingly evidence-based disciplines of bison ecology, evolution, rewilding, management, and conservation.
DOI: 10.26208/gdhm-3m06
title: A simple theory for interfacial properties of dilute solutions

description: Recent studies suggest that cosolute mixtures may exert significant non-additive effects upon protein stability. The corresponding liquid–vapor interfaces may provide useful insight into these non-additive effects. Accordingly, in this work, we relate the interfacial properties of dilute multicomponent solutions to the interactions between solutes. We first derive a simple model for the surface excess of solutes in terms of thermodynamic observables. We then develop a lattice-based statistical mechanical perturbation theory to derive these observables from microscopic interactions. Rather than adopting a random mixing approximation, this dilute solution theory (DST) exactly treats solute–solute interactions to lowest order in perturbation theory. Although it cannot treat concentrated solutions, Monte Carlo (MC) simulations demonstrate that DST describes the interactions in dilute solutions with much greater accuracy than regular solution theory. Importantly, DST emphasizes a fundamental distinction between the “intrinsic” and “effective” preferences of solutes for interfaces. DST predicts that three classes of solutes can be distinguished by their intrinsic preference for interfaces. While the surface preference of strong depletants is relatively insensitive to interactions, the surface preference of strong surfactants can be modulated by interactions at the interface. Moreover, DST predicts that the surface preference of weak depletants and weak surfactants can be qualitatively inverted by interactions in the bulk. We also demonstrate that DST can be extended to treat surface polarization effects and to model experimental data. MC simulations validate the accuracy of DST predictions for lattice systems that correspond to molar concentrations.
DOI: 10.34740/kaggle/dsv/4058560
title: Bellabeat case study project by Geetha
DOI: 10.5517/ccdc.csd.cc25dy0k
title: CCDC 2008428: Experimental Crystal Structure Determination

description: Related Article: Nobuto Yoshinari, Natthaya Meundaeng, Hiroyasu Tabe, Yusuke Yamada, Satoshi Yamashita, Yasuhiro Nakazawa, Takumi Konno|2020|Angew.Chem.,Int.Ed.|59|18048|doi:10.1002/anie.202008296
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2733t9
title: CCDC 2058580: Experimental Crystal Structure Determination

description: Related Article: Viktor Bliksted Roug Pedersen,  Jeppe Granhøj,  Andreas Erbs Hillers‐Bendtsen,  Anders Kadziola,  Kurt V. Mikkelsen,  Mogens Brøndsted Nielsen|2021|Chem.-Eur.J.|27|8315|doi:10.1002/chem.202100984
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27wlnd
title: CCDC 2082104: Experimental Crystal Structure Determination

description: Related Article: Cristiana Cesari, Marco Bortoluzzi, Cristina Femoni, Maria Carmela Iapalucci, Stefano Zacchini|2021|Dalton Trans.|50|9610|doi:10.1039/D1DT01517F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.15079074.v2
title: Supplemetary material final draft.docx

description: Evaluation of intestinal response to zinc restriction in pigs.Supplementary table 1 shows the growth performance of pigs in different treatment groups. Supplementary tables 2 and 3 show the differentially expressed genes (DEGs) in ZnR compared with ZnCl100 and ZnCl50 respectively.Supplementary tables 4-11 show the panther analysis of the DEGs. Supplementary figure 1 shows top three upregulated and downregulated canonical pathways through IPA analysis of differentially expressed genes in ZnCl100 compared with ZnCl50. Z-score &gt;2 or &lt;-2 were considered significantly upregulated (black columns) or downregulated (grey columns) respectively. n=8 for ZnCl100 and ZnCl50. Supplementary figure 2 shows independent examination of tissue samples by qPCR revealed significant changes similar to log2 fold change values in DEGs. * Mann-Whitney unpaired non-parametric test (p&lt;0.05 was considered significant). n=7 for ZnR, n=8 for ZnCl100 and ZnCl50.
DOI: 10.6073/pasta/fce6fa78e511de414c5137fbdc302508
title: Maple Reproduction and Sap Flow at Harvard Forest since 2011

description: Seed production assures the persistence of tree populations and forest cover over the long-term, and so has long interested plant demographers and foresters. Many forest tree species produce seeds synchronously and at irregular intervals across large areas, a phenomenon known as masting. Initiated in spring 2011, this study addresses the mechanisms of mast seeding in sugar maple (Acer saccharum), and its impact on pollinators, seed consumers, and forest carbon dynamics at the Harvard Forest. We monitor seed production (via counts of seeds on trees), flower production, and resource status (via sap collection) on 20 trees. Pollinator dynamics and seed predation (by weevils) are also monitored. In 2015, we added sap and seed monitoring of red maple (Acer rubrum) trees to explore the hypothesis that this non-masting species would have muted dynamics compared to its masting congener.
DOI: 10.6084/m9.figshare.20468652
title: TY tracksite fallen block photographs for photogrammetry

description: Photographs for photogrammetry, TY tracksite, Lesotho, fallen block. Photographs by Oliver Wings. <br> For the 3D models and further details, see https://doi.org/10.6084/m9.figshare.20398815
DOI: 10.6084/m9.figshare.20468652.v1
title: TY tracksite fallen block photographs for photogrammetry

description: Photographs for photogrammetry, TY tracksite, Lesotho, fallen block. Photographs by Oliver Wings. <br> For the 3D models and further details, see https://doi.org/10.6084/m9.figshare.20398815
DOI: 10.6073/pasta/52d5c7306861eaa1140da89b056c6748
title: Meteorological data from El Verde Field Station: NADP Tower

description: Meteorological sensors are located at the top of a 20 m tower, the NADP Tower, behind the main buildings of El Verde Field Station, 350 masl. No large trees are present near the tower. Sensors are connected to a Campbell 1000X data logger, with a storage module, and downloaded every two weeks using a wireless radio connection from the laboratory to the tower. Data are compiled at the station before it is made available. The station was initiated in 2000. Complementary manual measurements of rainfall and maximum and minimum air temperatures are taken on a daily basis at a separate physical location.
DOI: 10.5517/ccdc.csd.cc28xzbj
title: CCDC 2113218: Experimental Crystal Structure Determination

description: Related Article: Reza Kia, Faranak Heshmatnia|2022|Inorg.Chim.Acta|540|121049|doi:10.1016/j.ica.2022.121049
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28xzdl
title: CCDC 2113220: Experimental Crystal Structure Determination

description: Related Article: Reza Kia, Faranak Heshmatnia|2022|Inorg.Chim.Acta|540|121049|doi:10.1016/j.ica.2022.121049
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.20474196
title: Pyrocystis lunula SPAdes preassembly

description: ......
DOI: 10.15472/l8gqqu
title: Lista de fauna y flora presentes en el Parque Eólico Windpeshi

description: Este recurso contiene una lista de las especies de fauna y flora derivada de la fase de campo del Estudio de Impacto Ambiental realizado en el "Parque Eólico Windpeshi", en septiembre de 2019. Contiene um total de 129 taxones, abarcando 111 animales y 18 plantas, con 124 especies y 5 géneros. Contiene información de tipo de migración para 63 especies y la abundancia de la especie en el parque para 87 taxones.
DOI: 10.34740/kaggle/dsv/3407308
title: MiniDDSM DATASET
DOI: 10.5517/ccdc.csd.cc28h251
title: CCDC 2099852: Experimental Crystal Structure Determination

description: Related Article: Xin-Yi Qiao, Yao Zuo, Xin-Chao Wang, Xiao-Meng Hu, Wen-Min Wang, Hong-Ling Gao, Jian-Zhong Cui|2022|Inorg.Chim.Acta|541|121094|doi:10.1016/j.ica.2022.121094
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bx18l
title: CCDC 2171899: Experimental Crystal Structure Determination

description: Related Article: Guoqi Zhang|2022|Chem.Commun.|58|8109|doi:10.1039/D2CC02815H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c6lfm
title: CCDC 2181080: Experimental Crystal Structure Determination

description: Related Article: Hong Shen|2022|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|78|398|doi:10.1107/S2053229622006453
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15472/b6dvj5
title: Lista de fauna y flora epífita presente en el Parque Solar Valledupar

description: Este recurso contiene una lista dervidada de información primaria obtenida en la fase de campo del Estudio de Impacto Ambiental realizado en el "Parques Solar Valledupar", proporciona datos sobre las características cualitativas y cuantitativas de la fauna y flora epífita, determinando su estado actual, funcionalidad y estructura, en el área de influencia definida para la construcción del parque solar Valledupar. Contiene 164 taxones, divididos en fauna (156) y epífitas (8), abarcando 162 especies y 2 géneros. Contiene información adicional de las especies como uso de la especie, tipo de migración y número de individuos de la espcie identificados al interior del Parque Solar.
DOI: 10.6084/m9.figshare.20369253
title: dataset and scripts

description: All original data is store in the folder "data", and all plots in the manuscript can be generated using the file of "Generate_All_Figures.m". To plot, download both "data" and "scripts".
DOI: 10.6084/m9.figshare.20474256
title: Figure 3 data set.xlsx

description: oxidative stress challenge cell viability
DOI: 10.6084/m9.figshare.20474241
title: Figure 6 data set.xlsx

description: Bmal1 rescued cells
DOI: 10.6084/m9.figshare.20474241.v1
title: Figure 6 data set.xlsx

description: Bmal1 rescued cells
DOI: 10.6084/m9.figshare.20474244
title: Per2luc phases and periods.xlsx

description: Per2luc phases and periods in 661W cells
DOI: 10.6084/m9.figshare.20474244.v1
title: Per2luc phases and periods.xlsx

description: Per2luc phases and periods in 661W cells
DOI: 10.6084/m9.figshare.20474247
title: Figure 1 data set.xlsx

description: Gene expressions in 661W cells
DOI: 10.6084/m9.figshare.20474247.v1
title: Figure 1 data set.xlsx

description: Gene expressions in 661W cells
DOI: 10.6073/pasta/d7cd2a822cdf3f81ed9b598dede6804a
title: Hubbard Brook Experimental Forest: Leaf Area Index (LAI) Bear Brook Watershed (West of Watershed 6)

description: Leaf area index (LAI) of the mature deciduous forest in the Bear Brook watershed (west of WS6) at Hubbard Brook Experimental Forest is estimated on the basis of leaf litterfall collections; the raw data for litterfall are posted in the EDI data package – Fine Litterfall Data at the Hubbard Brook Experimental Forest, 1992 – present (https://portal.edirepository.org/nis/mapbrowse?scope=knb-lter-hbr&identifier=49). Leaf litterfall collected in 0.097 m2 litter traps is sorted by species. The number of leaves of each species is counted. The counts are multiplied by the average area per leaf for each species in each plot to estimate LAI. Litter traps are located randomly within each of four plots that are arranged along the elevation gradient within the deciduous forest zone. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.
DOI: 10.6084/m9.figshare.20474250
title: Figure 4 data set.xlsx

description: Gene expression and GPx activity in 661W cells
DOI: 10.6084/m9.figshare.20474250.v1
title: Figure 4 data set.xlsx

description: Gene expression and GPx activity in 661W cells
DOI: 10.6084/m9.figshare.20474253
title: Figure 2 data set.xlsx

description: Gene expressions in BKO cells
DOI: 10.6084/m9.figshare.20474253.v1
title: Figure 2 data set.xlsx

description: Gene expressions in BKO cells
DOI: 10.6084/m9.figshare.20474166
title: Antioxidant assay results.xlsx

description: Antioxidant assay in 661W and BKO cells
DOI: 10.25505/fiz.icsd.cc24tfn2
title: CSD 1990654: Experimental Crystal Structure Determination

description: Related Article: Jacinthe Gamon, Arnaud J. Perez, Leanne A. H. Jones, Marco Zanella, Luke M. Daniels, Rhun E. Morris, Chiu C. Tang, Tim D. Veal, Laurence J. Hardwick, Matthew S. Dyer, John B. Claridge, Matthew J. Rosseinsky|2020|J.Mater.Chem.A|8|20553|doi:10.1039/D0TA07966A
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.20474874
title: Phylogenetic tree for tfdA with boostraps

description: Tree of curated tfdA sequences with bootstrap values.
DOI: 10.6084/m9.figshare.20475090
title: Code for phylogenetic tree

description: Code for the design assembly of the phylogenetic tree in .txt and .nwk files.
DOI: 10.6084/m9.figshare.20475258
title: Supplementary information

description: Supplementary information for manuscript, includes Table S1 and Figure S1.
DOI: 10.6084/m9.figshare.20475258.v1
title: Supplementary information

description: Supplementary information for manuscript, includes Table S1 and Figure S1.
DOI: 10.17632/t474bsmff8.1
title: LINF_310023400

description: Diphthine methyl ester synthase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/cp897djgn9.1
title: Generating a pixel-wise annotated training dataset to train ML algorithms for mineral identification in Mineral thin sections

description: The dataset contains two folders. 1. In the "virtual_microscopy" folder, you can find a short screen recording showing how PetroScan works. PetroScan is the built-in toolbox of Virtual Petrography (ViP) platform used for displaying digital thin section images under different modes. The video records the extinction behavior and the change of inference color of quartz and mica in a mylonite sample under cross-polarized when moving the angle selection wheel. 2. "Superpixel_evaluation_example" contains boundary maps and raw images of a subarea of Bentheimer Sandstone. The superpixel segmentation results using different superpixel algorithms can be found in the subfolder "qualitative_evaluation".
DOI: 10.17632/gjg5wgxbfw.1
title: LINF_310023800

description: 3-ketoacyl-CoA thiolase-like protein
Leishmania infantum (strain JPCM5)
DOI: 10.17632/cp897djgn9.2
title: Generating a pixel-wise annotated training dataset to train ML algorithms for mineral identification in Mineral thin sections

description: The dataset contains two folders. 

1. In the "virtual_microscopy" folder, you can find a short screen recording showing how PetroScan works. PetroScan is the built-in toolbox of Virtual Petrography (ViP) platform used for displaying digital thin section images under different modes.  The video records the extinction behavior and the change of inference color of quartz and mica in a mylonite sample under cross-polarized when moving the angle selection wheel.

2. "Superpixel_evaluation_example" contains boundary maps and raw images of a subarea of Bentheimer Sandstone. The superpixel segmentation results using different superpixel algorithms can be found in the subfolder "qualitative_evaluation".  

3. "Bentheimer" contains xpol and ppol images of the sample used in the paper.
DOI: 10.17632/hrrz7wz892.1
title: LINF_310024000

description: GINS complex subunit
Leishmania infantum (strain JPCM5)
DOI: 10.25505/fiz.icsd.cc212jsg
title: CSD 1879275: Experimental Crystal Structure Determination

description: Related Article: Maurice Conrad, Thomas Schleid|2021|J.Alloys Compd.|868|159097|doi:10.1016/j.jallcom.2021.159097
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.