cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21931569
title: Supplementary Material for: Pancreatic anastomosis in robotic-assisted pancreaticoduodenectomy: different surgical techniques

description: Robot-assisted pancreatoduodenectomy (R-PD) may provide challenges but potential benefits for pancreatic-enteric anastomosis fashioning. Despite numerous trials comparing different pancreatic-enteric anastomosis techniques, an ideal method is still missing. This study aims to describe different management strategies and surgical techniques of standardized pancreatic-enteric anastomoses during an R-PD. This study reported the robotic technical steps of the modified end-to-side Blumgart pancreaticojejunostomy, the Cattel-Warren duct-to-mucosa pancreatojejunostomy, with internal or external pancreatic duct stent, and the Modified end-to-side, double layer pancreogastrostomy. A dual-console da Vinci Xi Surgical System® (Intuitive Surgical Xi, Sunnyvale, CA) was used to perform all the R-PD. Different robotic pancreatic-enteric anastomosis techniques can be used during the reconstruction phase, possibly reproducing the open technique. The type of anastomosis and applied mitigation strategies should balance surgical strategy adaptability and operative technique standardization. R-PD should be performed in high-volume centres by surgeons with extensive experience in pancreatic and advanced MI surgery, enabling different but standardized anastomotic techniques based on patients' risk factors and intraoperative findings. Future studies on robotic pancreatic anastomosis should focus on personalized approaches after adequate risk stratification.
DOI: 10.18462/iir.infood07.04.2021
title: The carbon footprint of the cold chain, 7th Informatory Note on Refrigeration and Food.
DOI: 10.5281/zenodo.6557623
title: Live imaging data of XBP1 mRNA under ER stress conditions.

description: Live microscopy images of single XBP1 mRNA transcripts under ER stress conditions (TM).
DOI: 10.5281/zenodo.6559125
title: Live cell imaging data of IRE1a-GFP foci formation

description: Live cell imaging of XBP1 mRNA and IRE1a-GFP expressing cells.
DOI: 10.5281/zenodo.6559201
title: Live imaging data of XBP1 mRNA under control conditions.

description: Live imaging data of single XBP1 mRNA transcripts under control conditions.
DOI: 10.5281/zenodo.7243956
title: RNAseq of salivary gland IL10 positive CD4+ Tcells versus IL10 negative CD4+ Tcells at day14 post MCMV infection

description: Bulk RNAseq, DESeq2 (https://bioconductor.org/packages/release/bioc/html/DESeq2.html) output for salivary gland IL10 positive CD4+ Tcells versus IL10 negative CD4+ Tcells at day14 post MCMV infection.
DOI: 10.5281/zenodo.845349
title: Perceive: Wp2: Evaluation Of Eu Citizens' Perception Of The Eu Project: Task2.1: Data Relative To Regional Performance Of The Cohesion Policy And Institutional Quality

description: 1. PERCEIVE regional panel datasets - secondary data collected from Eurostat, EU Commission on Strutural Fund Expenditures and quality of government for NUTS 1, 2 and 3 regions from 1990-2015, (STATA files).  See codebook for more detail about variables

2. Flash Eurobarometer survey data on "Awarness of EU Regional Policy" and questionaires (STATA files)

3. Standard Eurobaromter survey data, annual, from 2000-2016 and questionaires (STATA files)

4. Expenditure data on EU Structural Funds, latest three budget periods (2000-2020) (Excel file)
DOI: 10.6084/m9.figshare.23654175
title: Supplementary Material for: Prognostic Implication of Pulmonary Arterial Pressure in Surgical Repair of Predominantly Congenital Mitral Value Regurgitation-based Intracardiac Abnormalities

description: Background Knowledge is limited regarding the significance of pulmonary arterial pressure (PAP) in predominantly congenital mitral value regurgitation (MR)-based intracardiac abnormalities. Methods From a prospective cohort, we included 200 patients with congenital mitral value regurgitation regardless of other associated intracardiac abnormalities (mean age 60.4 months, 67% female, systolic PAP [sPAP] 54.2 mm Hg) surgically repaired in 2012-2019 and followed up to 2020 (median 30.0 months). Significant pulmonary hypertension (PH) was defined as sPAP &gt; 50 mm Hg at rest or mean PAP &gt; 25 mmHg on right heart catheterization. By perioperative sPAP changes, patients were stratified as Group I (pre-normotension-to-post-normotension), Group II (pre-hypertension-to- post-normotension), or Group III (pre-hypertension-to- post-hypertension). Primary outcomes were the recurrence of MR (defined as the regurgitation grade of moderate or greater) and the progression of MR (defined as any increase in magnitude of regurgitation grade after surgery). Cox proportional hazard and Kaplan-Meier curve was performed. Results There was no association between preoperative PH and the recurrent MR (adjusted hazard ratios [aHR] 1.146 [95% CI 0.453-2.899]) and progressive MR (aHR 1.753 [95% CI 0.807-3.804]), respectively. There were no significant differences among Group I, Group II and Group III in the recurrent MR but in the progressive MR. A dose dependency was identified for preoperative sPAP with the recurrent MR (aHR 1.050 [95% CI 1.029-1.071]) and progressive MR risks (aHR 1.037 [95% CI 1.019-1.055]), respectively. Conclusions Preoperative higher sPAP are associated with worse outcomes, warranting heightened attention to the identification of perioperative sPAP.
DOI: 10.25955/5f98c272a6ef5
title: Challenges for ECRs in STEMM - data supporting eLife manuscript "A survey of early-career researchers in Australia"

description: Early-career researchers (ECRs) make up a large portion of the academic workforce and their experiences often reflect the wider culture of the research system. The responses highlight how job insecurity, workplace culture, mentorship and ‘questionable research practices’ are impacting the job satisfaction of ECRs and potentially compromising science in Australia. We also make recommendations for addressing some of these concerns.In this study we sought to understand the workplace pressures of early career researchers (ECRs) working in the Science, Technology, Engineering, Mathematics, & Medicine (STEMM) disciplines in Australian universities and independent research institutes to better understand the needs and challenges faced by this community. We collected data in an on-line survey from 658 ECRs from across Australia. Our respondents clearly showed they were in their positions because of their “<i>love of science</i>”, but most also indicated an intention to leave their jobs.When asked what would be likely to be the main reason for a decision to leave research, the prime motivations were reported to be job insecurity followed by lack of funding and lack of independent positions though our data shows significant workplace challenges also contribute to these decisions. Our respondents reported they had been impacted by poor supervision, by bullying or harassment, by inequitable hiring practices and by poor support for people with family responsibilities.Our respondents also reported a concerning rate of “<i>questionable research practices</i>”<i> </i>within their institution and from outside their institution. These impacted more women than men.Our study links to recent reports from Australia and overseas that characterise the poor health of the research industry, providing direct insight from Australian ECRs on their job insecurity, workplace culture challenges, and the logical consequent rise of questionable research practices.Internationally, nationally and institutionally the research community needs to improve job security (care for our people) and the quality of research data (our product).
DOI: 10.5281/zenodo.7199952
title: VIOLENCE AGAINST WOMEN ANALYZED UNDER THE THOUGHT OF EDMUND HUSSERL IN THE CONTEXT OF THE SOCIETY OF APURIMAC

description: <strong>ABSTRACT</strong> The purpose of the investigation was to analyze the experiences and perspectives on violence against women in the Apurímac region. The analysis was carried out through interviews with women in each of the provinces of Apurimac. The aim was to learn about the status of women's rights and the effectiveness of provisions and regulations for their protection. It will also delve into the vast cultural and social diversity present in the interviews themselves, in contrast to the current normative system. The results will allow us to address possible future advances for the respect of women's rights. <strong>Key words:</strong> gender violence, patriarchy, abuse against women, poverty.
DOI: 10.5281/zenodo.7472263
title: Seaglider (SG537) dataset collected during the ROAM-MIZ field campaign in the Southern Ocean

description: This dataset is a part of the Robotic Observations And Modelling in the Marginal Ice Zone (ROAM-MIZ, www.roammiz.com) project, and contains the temperature and salinity profiles from a Seaglider (SG537), which was deployed at the Prime Meridian in the northeastern Weddell Sea (0.00W and 55S) from 18th October 2019 to 18th February 2020 and obtained a total of five repeated crossings of the Southern Boundary.
description: This deployment was supported by the grants of Karen Heywood: European Research Council (under H2020-EU.1.1.) under research grant COMPASS (Climate-relevant Ocean Measurements and Processes on the Antarctic continental Shelf and Slope, grant agreement ID: 741120) and Sebastiaan Swart: Wallenberg Academy Fellowship (WAF 2015.0186), Swedish Research Council (VR 2019-04400).
DOI: 10.6084/m9.figshare.8283593.v3
title: Sapling leaf and root chemistry from 6.6 km Jianfengling transect

description: Leaf and root tissue chemsitry for 300 saplings of 50 species (14 faimiles) of tropical trees from Jianfengling, Hainan Island, China. Data were collected during the summer (May to July) of 2017. Laboratory analyses of plant tissue elemental composition of 15 elements (carbon, nitrogen, boron, sodium, magnesium, aluminum, phosphorus, sulfur, potassium, calcium, magnesium, iron, copper, zinc and molybdenum) completed at Florida International and Lousiana State Universities. Soil analyses completed by the Guangzhou Xinhua Agricultural Technical Development Limited Company in Guangzhou, China. See the Metadata_Jianfengling_CHINAROOTS_TissueNutrients.txt for complete metadata.<br>see www.experiment.com/chinaroots (doi: 10.18258/9485) for a greater description of this research project. Address correspondence regarding these data to J. Aaron Hogan (jamesaaronhogan at gmail dot com).<br><br>This dataset is related to our article published in Plant & Soil:<br>Hogan, J.A., Valverde-Barrantes, O.J., Tang, W., et al. Evidence of elemental homeostasis in fine root and leaf tissues of saplings across a fertility gradient in tropical montane forest in Hainan, China. <i>Plant Soil</i> 460, 625–646 (2021).
DOI: 10.5281/zenodo.6559058
title: Live imaging data of XBP1 mRNA under ER stress and IRE1a inhibition

description: Live microscopy data of XBP1 mRNA transcript in TM and 4u8C.
DOI: 10.5281/zenodo.6559109
title: Fixed cell imaging data of XBP1 mRNA

description: Fixed cell imaging data consisting of smFISH agains XBP1 mRNA and IF against scAB-GFP.
DOI: 10.6084/m9.figshare.23047103
title: Supplementary Material for: Levonorgestrel as a Potential Trigger of Acute Bilateral Central Serous Chorioretinopathy: Case Report

description: This is a first ever report describing a case of acute bilateral central serous chorioretinopathy which developed shortly after the consumption of levonorgestrel as emergency contraception. A 27-year-old female patient visited the emergency department of the clinic due to diminished visual acuity in both eyes. She had taken a single pill of levonorgestrel (1.5 mg) as emergency contraception 2 days prior. Fundus examination showed macular edema. Optical coherence tomography (OCT) revealed serous bilateral detachment of the macular retina. Fluorescein angiography showed a “smokestack” leakage of contrast in the right eye and focal macular leakage in the left eye. Ten days after oral diuretic and topical nonsteroidal anti-inflammatory drugs were prescribed, follow-up examination revealed improvement of best corrected visual acuity and OCT showed complete regression of subretinal fluid. One month and 3 months after the initial visit, the patient’s best corrected visual acuity returned to 20/20 and OCT showed no signs of subretinal fluid. This case highlights levonorgestrel as a potential trigger for this serious chorioretinal condition, thus expanding on the literature on possible risk factors and mechanisms of development for central serous chorioretinopathy.
DOI: 10.13020/3b1n-ff32
title: Data Related to: Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use

description: We conducted a meta-analysis of over 30 genome wide association studies (GWAS) in over 1.2 million participants with European ancestry on nicotine and substance use. Specifically, we targeted different stages and kinds of substance use from initiation (smoking initiation and age of regular smoking initiation) to regular use (drinks per week and cigarettes per day) to cessation (smoking cessation). The GWAS included have all been imputed to Haplotype Reference Consortium, 1000 Genomes or a combination including more specific reference panels. The studies are then meta-analyzed using sample size, allele frequencies and the imputation quality score as weight. Here we present the final set of filtered meta-analysis summary statistics as presented in the paper (https://doi.org/10.1038/s41588-018-0307-5) excluding 23andMe. As per requirement and to ease dissemination of our results for other scientific endeavors, we are sharing our results here to facilitate downloading.
description: Files include summary statistics for associations with each phenotype: Drinks per week, Cigarettes per day, Smoking initiation, Smoking cessation, and Age of initiation. Details for each file can be found in the readme file or in the article's Supplementary Text.
DOI: 10.17632/8f62vydg3z.1
title: Miniature spatial transcriptomics for studying parasite-endosymbiont relationships at the micro scale

description: Processed gene count matrices, related metadata, corresponding ST tissue H&E microscopy images, and 3D model HTML files generated in the study "Miniature spatial transcriptomics for studying parasite-endosymbiont relationships at the micro scale"
DOI: 10.21227/4x41-7146
title: Taean and Incheon Measured Data

description: The analysis is based on two kinds of measured dataset. In both cases, uplink data are measured (A-UL0) i.e. the transmitters are UBSs and the receiver is UBSC and FDD is used. The first dataset has been collected from August 17, 2018, to August 20, 2018. The experiment has been carried over two separate distances, i.e., 1km, and 3 km between the transmitter (Tx) and receiver (Rx) in Mohang Port (Taean-gun). The latitude and longitude coordinates for 1 km and 3 km distances were: Tx—36°54'43.13''N 126°12'21.53''E and Rx—36°54'11.83''N 126°11'27.90''E, and Tx—36°54'44.43''N 126°12'37.33''E and Rx—36°54'05.40''N 126°11'18.83''E, respectively. The second is from a 24-hour experiment from July 5, 2017, to July 6, 2017. The experiment has been carried out over a 2 km distance between the Tx and Rx in the Yellow Sea (Deokjeokdo, Incheon). The latitude and longitude coordinates were Tx—37°13'28.2"N 126°12'12.0"E and Rx—37°14'22.7"N 126°12'55.1"E.There was a total of 288 combinations of different kinds of parameters, and 417 sets of experimental data in the Taean dataset[16], which is a good reason to take a step-by-step approach in selecting the suitable modulation and coding scheme (MCS) levels. The process to analyze the Taean dataset has been divided into three stages, which included three-dimensional analysis, modulation-wise analysis, and a fixed SNR strategy. Unlike the Taean dataset, the Incheon dataset has 108 combinations of parameters and 10,105 sets of experimental data. This enormous dataset makes it impossible to analyze with any kind of strategy other than the ML approach.
DOI: 10.5281/zenodo.2547396
title: Bitcoin Network Transaction Inv Data with Java Timestamp and Originator Id

description: The data is a gz compression of a csv file with the following layout: &lt;timestamp in ms&gt;,&lt;originator id as sha-256 hash in hexadecimal string representation&gt;, &lt;hash of BTC Transaction in hexadecimal string representation&gt; Example lines: 1547779473468,6cf1100aaccec75da23995512fc7c7a5b6e25224f5903af011e78691c03d0455,a73578820a41aa6180621bcd90af1997c88794b33d8db2f004ee37c3e09b10ec<br> 1547779473468,6cf1100aaccec75da23995512fc7c7a5b6e25224f5903af011e78691c03d0455,0beb35a4338b026fb4ceb0d215d372f67dfb0c73f1e21157e03dde2fbc6b94ee The data was gathered with a modified version of bitcoinj 0.14.7. The modification consisted of: Blinding Originator IP+Port by hashing with a key generated at application startup Logging every Transaction Inv message to a file The application running the modified library just consisted of creating a Peer Pool of at most 6000 connections and limiting broadcasting to require 100000 connections, set via bitcoinj parameters. The data of crawler-82GB.gz was gathered between 17.01.2019, 15:30 and 18.01.2019, 03:00 at Ulm University in Ulm, Germany. The data of crawler-01-02-2019-09-54-59-ULM.csv.gz was gathered on 01.02.2019 at Ulm Iniversity in Ulm, Germany as well. The data of crawler-24.01.2019-*.gz was gathered between 24.01.2019, 10:00 and 25.01.2019 10:00 on Microsoft Azure instances. The selected region of Azure is indicated in the filename: UK, South; US, East; Southeast Asia. The datasets of crawler-06.02.2019-*-SIMUL.csv.gz were gathered with the same runtime key so ID's can be linked within the datasets. Locations again are Ulm University, Germany, and Azure UK, South (GBS); US, East (USA); Southeast Asia (SEA). ETH-crawler-20+21.02.2019.csv contains a similar collection of the Ethereum network for comparisson.
DOI: 10.5519/qd.xn2spgj1
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5519/qd.zsfxetyg
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.48670/moi-00017
title: Global Ocean Waves Analysis and Forecast
DOI: 10.5281/zenodo.3905282
title: Mesquita et al 2020

description: Data used in the paper "In-situ observations of neutral shear instability in the statically stable high-latitude mesosphere and lower thermosphere during quiet magnetic conditions". Data includes "pyglow-master.zip", which is the python code used to generate the empirical model results.
DOI: 10.6084/m9.figshare.22923848
title: Supplementary Material for: Comparison between the effects of allopurinol and febuxostat on the survival of patents on maintenance hemodialysis

description: Introduction: There were insufficient evidences regarding the effect of the two drugs (allopurinol and febuxostat) on patient survival in hemodialysis (HD) patients. Herein, we aimed to compare the efficacy of uric acid lowering drugs (ULDs) or the type of the drug on patient survival using a representative sample of maintenance HD patients in South Korea. Methods: This study used a data from a national HD quality assessment program and the claims data. Use of ULDs was defined as more than one prescription during the 6 months of each HD quality assessment period. The patients were divided into three groups. Patients who were not prescribed allopurinol or febuxostat were included in Group 1 (n = 43,251); and patients who were prescribed allopurinol were included in Group 2 (n = 9,987); and patients who were prescribed febuxostat were included in Group 3 (n = 2,890). Results: Kaplan–Meier curves showed that the survival rate was greatest in Group 3 and worst in Group 1 among the three groups. Multivariable analysis showed that Group 2 had better patient survival compared to Group 1; however, there was no significant difference in patient survival between Groups 2 and 3. In addition, patients with hyperuricemia or gout had better patient survival compared to those without these diseases. Conclusions: Our study showed that survival in patients receiving ULDs was not inferior to those not receiving ULDs. Patient survival between patients on HD receiving allopurinol and those receiving febuxostat was similar.
DOI: 10.5066/p9je15xz
title: Detections, Physical Captures, Water Quality, and Fish Health associated with Endangered Suckers in Three Net Pens in Upper Klamath Lake, 2020

description: To determine how initial length affects survival of captively-reared juvenile suckers, we introduced Passive Integrated Transponder (PIT) tagged juvenile suckers into three net pens in Upper Klamath Lake. The suckers originated from the U.S. Fish and Wildlife Service's Sucker Assisted Rearing Program in Klamath Falls, Oregon, which rears suckers collected as larvae in Upper Klamath Lake including Lost River sucker (Deltistes luxatus), shortnose sucker (Chasmistes brevirostris), and Klamath largescale sucker (Catostomus synderi). Suckers were monitored continuously by PIT antennas. These data contain all remote detections from the PIT antennas, all physical captures, water quality data associated with each net pen, and dates when damage to two of the net pens was first detected. The results from a diagnostic work-up following standard fish health methods of four moribund suckers that were exhibiting fin hemorrhage and tail erosion during the study are also contained in these data.
DOI: 10.15783/c7088f
title: CRAWDAD dataset kth/rss (v. 2016-01-05)

description: This dataset contains the RSS (Radio Signal Strength) data collected with a mobile robot in two environments: indoor (KTH) and outdoor (Dortmund). RSSI metric was used to collect the RSS data in terms of dBm. The mobile robot location was recorded using its odometry (dead reckoning).
description: Changelog: the initial version
DOI: 10.26208/xv41-7n75
title: The potential benefits of handling mixture statistics via a bi-Gaussian EnKF: Tests with all-sky satellite infrared radiances

description: The meteorological characteristics of cloudy atmospheric columns can be very different from their clear counterparts. Thus, when a forecast ensemble is uncertain about the presence/absence of clouds at a specific atmospheric column (i.e., some members are clear while others are cloudy), that column's ensemble statistics will contain a mixture of clear and cloudy statistics. Such mixtures are inconsistent with the ensemble data assimilation algorithms currently used in numerical weather prediction. Hence, ensemble data assimilation algorithms that can handle such mixtures can potentially outperform currently used algorithms.

In this study, we demonstrate the potential benefits of addressing such mixtures through a bi-Gaussian extension of the ensemble Kalman filter (BGEnKF). The BGEnKF is compared against the commonly used ensemble Kalman filter (EnKF) using perfect model observing system simulated experiments (OSSEs) with a realistic weather model (the Weather Research and Forecast model). Synthetic all-sky infrared radiance observations are assimilated in this study. In these OSSEs, the BGEnKF outperforms the EnKF in terms of the horizontal wind components, temperature, specific humidity, and simulated upper tropospheric water vapor channel infrared brightness temperatures.

This study is one of the first to demonstrate the potential of a Gaussian mixture model EnKF with a realistic weather model. Our results thus motivate future research towards improving numerical Earth system predictions though explicitly handling mixture statistics.