cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22580473.v3
title: Global Urban Network SVI Data

description: This data set contains segmentation masks for city-scale street view imagery. We employ Meta's Mask2Former approach (Cheng, 2022) for image segmentation. <br> We obtain SVI from Mapillary which is the world's largest platform for free and open street view imagery (SVI). Till date, Mapillary's coverage has penetrated most global cities around the world. Compared to other proprietary options such as Google Street View, Mapillary images are hosted on a CC-BY-SA 4.0 licence, which allows users to freely share, use, and adapt images. <br> Images are subsampled proportionately based on geographic tiling of each city's administrative boundary and filtered to remove non-frontal facing and non-daylight images. <br> <br>
DOI: 10.6084/m9.figshare.3531722.v1
title: Appendix B. Effects of predator manipulations on plant species evenness across ecosystems.

description: Effects of predator manipulations on plant species evenness across ecosystems.
DOI: 10.6084/m9.figshare.12973100.v1
title: Supplementary Material for: Efficacy and Safety of Capecitabine Alone or in Combination in Advanced Metastatic Breast Cancer Patients Previously Treated with Anthracycline and Taxane: A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> Capecitabine is frequently used alone or combined with other chemotherapy agents for the treatment of metastatic breast cancer in relapsed patients. <b><i>Objective:</i></b> The objective of this meta-analysis is to evaluate the effectiveness and safety of capecitabine monotherapy versus combination in the treatment of metastatic breast cancer patients pretreated with anthracycline and taxane. <b><i>Methods:</i></b> Eligible randomized controlled trials examining the efficacy and safety of capecitabine alone compared to capecitabine combination were systematically searched. Progression-free survival (PFS), overall survival (OS), overall response rate (ORR), and grades 3–4 drug-related adverse events were the outcomes assessed. <b><i>Results:</i></b> A total of 6,714 patients of 9 trials were involved in the pooled analysis. Our findings demonstrated that capecitabine combination is significantly superior to capecitabine monotherapy in improving PFS (hazard ratio [HR] 1.32, 95% CI 1.13–1.54, <i>p</i> &lt; 0.0001) and ORR (risk ratio [RR] 0.67, 95% CI 0.54–0.83, <i>p</i> &lt; 0.001), but it was insignificant in OS (HR 1.09, 95% CI 0.98–1.22, <i>p</i> = 0.12). On the other hand, the incidence of non-hematological adverse events such as hand-foot syndrome and diarrhea was lower in capecitabine combination compared to capecitabine monotherapy. <b><i>Conclusion:</i></b> Capecitabine-based combination chemotherapy showed superiority over capecitabine monotherapy in terms of PFS and ORR, with no significant difference in OS. Non-hematological adverse effects such as hand-foot syndrome were fewer with a combination regimen. However, hematological adverse events were fewer with capecitabine monotherapy regimen.
DOI: 10.6084/m9.figshare.21679214.v1
title: Data for "Physical Infrastructure and Economic Growth

description: Data to estimate regression models in: "Physical Infrastructure and Economic Growth" by Timilsina, Stern, and Das.
DOI: 10.6084/m9.figshare.21581823.v1
title: Compiled DMS and VEP predictions

description: Compiled DMS measurements and variant effect prediction outputs for 26 proteins.
DOI: 10.6084/m9.figshare.5170705.v1
title: Pressure-sensitive keystroke dynamics data

description: Typing samples from a number of users collected on a pressure-sensitive keyboard
DOI: 10.6084/m9.figshare.5123116.v1
title: Supplementary Material for: Inclusion and Exclusion in Nutrigenetics Clinical Research: Ethical and Scientific Challenges

description: <i>Background/Aims:</i> There are compelling reasons to ensure the participation of ethnic minorities and populations of all ages worldwide in nutrigenetics clinical research. If findings in such research are valid for some individuals, groups, or communities, and not for others, then ethical questions of justice – and not only issues of methodology and external validity – arise. This paper aims to examine inclusion in nutrigenetics clinical research and its scientific and ethical challenges. <i>Methods:</i> In total, 173 publications were identified through a systematic review of clinical studies in nutrigenetics published between 1998 and 2007. Data such as participants’ demographics as well as eligibility criteria were extracted. <i>Results:</i> There is no consistency in the way participants’ origins (ancestry, ethnicity, or race) and ages are described in publications. A vast majority of the studies identified was conducted in North America and Europe and focused on ‘white’ participants. Our results show that pregnant women (and fetuses), minors, and the elderly (≧75 years old) remain underrepresented. <i>Conclusion:</i> Representativeness in nutrigenetics research is a challenging ethical and scientific issue. Yet, if nutrigenetics is to benefit whole populations and be used in public and global health agendas, fair representation as well as clear descriptions of participants in publications are crucial.
DOI: 10.6084/m9.figshare.17694500.v1
title: Supplementary Material for: MicroRNA expression profiling in myopia: a meta-analysis and systematic review

description: Background: Myopia (nearsightedness) is currently the most common human eye disorder worldwide. In the recent years, several studies have addressed the role of microRNAs (miRNAs) in the pathogenesis of myopia. Objectives: The aim of this study was to perform a meta-analysis on the miRNA expression profiling studies in myopia to identify commonly dysregulated miRNAs in myopic tissues. Method: Seven independent studies were included in the meta-analysis. A vote-counting strategy were employed as the meta-analysis method. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis and Gene Ontology (GO) functional enrichment analysis were performed to identify the pathways most strongly affected by the dysregulated mouse miRNAs. Results: According to the vote-counting method, eighteen miRNAs were reported in at least two studies with the consistent direction, of which 13 miRNAs were commonly up-regulated in myopic samples compared with control samples and five miRNAs were commonly down-regulated. Subgroup analyses divided and compared the differentially expressed miRNAs according to species (human and animal) and ocular tissue types. The KEGG analysis showed that the dysregulated mouse miRNAs were most enriched in extracellular matrix (ECM)-receptor interaction signal pathway. The most enriched GO processes regulated by the dysregulated mouse miRNAs was cellular protein modification process. Conclusions. Our meta-analysis recommends several miRNAs may provide some clues of the potential biomarkers in myopia. Further mechanistic studies are warranted to elucidate the biological role of the dysregulated miRNAs in the development of myopia.
DOI: 10.6084/m9.figshare.14778849.v1
title: Forbes_Pauza_and_Adams_SupplementaryTable1.xlsx

description: Table lists association studies between thrombospondin (TSPs) polymorphisms and cardiovascular disease in descending chronological order. Columns included main bibliographic data (study title and doi) and main findings of the study (Thrombospondin protein and polymorphism studied, genetic background of the study population, number of people studied, cardiovascular pathology investigated, main result and short conclusion). Thrombospondin 1, Thrombospondin 2 and Thrombospondin 4 are indicated in blue, green and orange colors, respectively. Key: MI – Myocardial infarction; CAD – coronary artery disease; SGA – small for gestational age; ACS ­– acute coronary syndrome; TAAD – thoracic aortic aneurysm and dissections. <br>
DOI: 10.6084/m9.figshare.3381268.v2
title: قادیانیوں-کا-منہج-تفسیرفکرونظر (Translation from Urdu: QADIYANI'S METHODOLOGY OF TAFSEER IN THE FIXATION OF MEANING - AN ANALYTICAL STUDY)

description: The Holy Quran, due to its unique style, eloquence and brevity has many distinctive miraculous features. These peculiarities can not be explained and elaborated without the skill and expertise in classical Arabic language. But it has to be kept in mind that though very important, language has a secondary rank in the deduction of commandments from Quran. The negative aspects related to deduction of meaning based on only language aspects and not the considering the other factors inappropriately neglects the following: Fixation of meaning while considering the particular contexts. Consideration and regard to the meanings of the words which were in use at the occasion of divine revelation of Quran (use of those words can possibly change over the centuries and what is important is referring to the classical Arabic). Consideration towards understadnig the distinction between the actual meaning and the metaphorical meaning. Prefering the rational meaning of the words which can have various different meanings. Understanding the meaning in the light of interpretation provided by the Prophet ﷺ himself and his blessed companions We see that these prime pattersn of driving the correct meaning of Quranic verses are missing in the Qadyani methodology of Quranic exegesis and in their other books. This paper elaborates these and other relevant aspects in detail while providing detailed evidences and examples.
DOI: 10.6084/m9.figshare.27328695.v1
title: Rock Fracture Geometry Data in Form of Grid Coordinate Points

description: The dataset provides rock fracture geometry data of 30 fracture samples, including granite, marble, and sandstone fractures. Among them, 25 fracture samples (5 rock fractures with different roughness × 5 aperture levels) are used for DNS in the study, and another 5 fracture samples with varying roughness for laboratory experiments.
DOI: 10.6084/m9.figshare.28505048.v1
title: AI Model for Ultrasound-Based Bladder Cancer Detection

description: This study aims to construct and validate an AI model based on ultrasound images to evaluate its accuracy in bladder cancer detection, provide an auxiliary tool for clinical diagnosis, and reduce the rates of misdiagnosis and missed diagnosis. Ultrasound image data from patients with bladder cancer at the Heilongjiang Provincial Hospital were collected. Deep learning algorithms were employed to extract and analyze features from the images, and an AI model based on Mask R-CNN was developed. After model training, its performance was assessed using an independent validation set. The results showed that the AI model demonstrated high diagnostic performance, with an overall accuracy of 95.1% in the validation group and 90.4% in the test group. Compared with traditional ultrasound diagnosis, the AI model can provide preliminary assessments of the size, location, and invasion degree of the lesions, offering valuable references for clinical decision-making. The study concludes that the ultrasound-based AI model has significant potential for application in bladder cancer detection, significantly improving diagnostic accuracy and efficiency. Future research will focus on further optimizing the model's performance and validating it with larger-scale clinical data to promote its application in real-world medical settings.
DOI: 10.4121/14226458.v2
title: Original data for the combined PIV/LIF measurement of a turbulent jet at a Reynolds number of 2000

description: This data set contains the original data for the combined PIV/LIF measurement of a turbulent jet at a Reynolds number of 2000.<br>This data was originally used to determine the mixing in a turbulent jet, but its main use was for the investigation of the mechanics of the turbulent/non-turbulent interface and the entrainment process. For this purpose measurements were carried out with combined particle image velocimetry (PIV) and laser-induced fluorescence (LIF). All data is contained in a Matlab data file (*.mat). PIV data are in pixel [px] units; LIF data are normalised relative to a calibration concentration field.
DOI: 10.6084/m9.figshare.3558264.v1
title: Appendix B. Analyses of the importance of coevolutionary history, temporal separation, and spatial separation on interspecific competition when controlling exotic/native status of the focal and competing herbivore.

description: Analyses of the importance of coevolutionary history, temporal separation, and spatial separation on interspecific competition when controlling exotic/native status of the focal and competing herbivore.
DOI: 10.6084/m9.figshare.5241808.v1
title: Erratum: Definition of Failed Induction of Labor and Its Predictive Factors: Two Unsolved Issues of an Everyday Clinical Situation

description: <b><i>Objective:</i></b> The objectives of this review were to identify the predictive factors of induction of labor (IOL) failure or success as well as to highlight the current heterogeneity regarding the definition and diagnosis of failed IOL. <b><i>Materials and Methods:</i></b> Only studies in which the main or secondary outcome was failed IOL, defined as not entering the active phase of labor after 24 h of prostaglandin administration ± 12 h of oxytocin infusion, were included in the review. The data collected were: study design, definition of failed IOL, induction method, IOL indications, failed IOL rate, cesarean section because of failed IOL and predictors of failed IOL. <b><i>Results:</i></b> The database search detected 507 publications. The main reason for exclusion was that the primary or secondary outcomes were not the predetermined definition of failed IOL (not achieving active phase of labor). Finally, 7 studies were eligible. The main predictive factors identified in the review were cervical status, evaluated by the Bishop score or cervical length. <b><i>Discussion:</i></b> Failed IOL should be defined as the inability to achieve the active phase of labor, considering that the definition of IOL is to enter the active phase of labor. A universal definition of failed IOL is an essential requisite to analyze and obtain solid results and conclusions on this issue. An important finding of this review is that only 7 of all the studies reviewed assessed achieving the active phase of labor as a primary or secondary IOL outcome. Another conclusion is that cervical status remains the most important predictor of IOL outcome, although the value of the parameters explored up to now is limited. To find or develop predictive tools to identify those women exposed to IOL who may not reach the active phase of labor is crucial to minimize the risks and costs associated with IOL failure while opening a great opportunity for investigation. Therefore, other predictive tools should be studied in order to improve IOL outcome in terms of health and economic burden.
DOI: 10.6084/m9.figshare.24715047.v1
title: Raw data for manuscript: Feeding kinematics of a surgeonfish reveal novel functions and relationships to reef substrata

description: Feeding kinematics of a surgeonfish reveal novel functions and relationships to reef substratahttps://doi.org/10.5061/dryad.6t1g1jx59Datasets contain raw x and y coordinates of all bites analysed, and for each landmark throughout the sequences. Furthermore, the values used to compare kinematics from videos, to our biomechanical model, as well as the equivalent algal lengths (Figure 4) are also found here.Description of the data and file structureEach excel file (except for the ones containing comparative or algal length data) represents a single bite. ID is the unique name of each bite. X and Y are the raw x and y coordinates, whereas x_mm and y_mm are the scaled coordinates relative to the distance of the camera to the algae in each video sequence. Slice is the timesamp in ms that each landmark was placed in, when analysig in ImageJ. Time is the same Slice, except for t=0 is assigned as when the jaws of the fish begin to close. This was done to make all bites temporally comparable to each other.The 'rotations_raw' and 'morphology' files contain the data for Figures 4 and 5. In the 'rotations_raw' file Suction represents the pressence of suction in the bite sequences, Phase 2 shows whether there was a Phase 2 present in each sequence. Duration_total is the total duration of each bite in ms. jaw_open1_time is the duration in ms for the first jaw opening whne the fish approaches the algae to take a bite. Jaw_open2_time is the duration in ms of the second jaw oening, when the fish has detached the algae and re-opens its mouth to ingest the detached algae. Benthos_lj_min is the minimum distance the jaw reaches to the benthos (line defined by landmarks HG). Algae_l_mm is the length of the algae targeted for each sequence. Dist_L_stretch is the amount of motion by landmark L (i.e., cranial rotation) observed in the videos, dist_EI_stretch is the motion between landmarks E and I observed in the videos, and dist_IO_stretch is the motion between landmarks I and O observed in the videos. The next 3 columns are the same as the previous, but what was predicted from our model, when considering the anatomy of each specimen that performed the bites (see file 'morphology').For the 'morphology' file, the ID column is the independent ID of each specimen (see ID name of raw x,y coordinate files as well). SL is the Standard length of each specimen. All other columns represent distances (mm) between landmarks measured on the specimens upon dissections.Code/SoftwareThe 'A_leuc_analysis.R' file contains the code used to make the kinematic profiles (e.g., Figure 1-3).The 'rotations.R' file contains the code used to make the plots and analyses (i.e., statistical models) for Figures 4 and 5.
DOI: 10.6084/m9.figshare.28633241.v2
title: Datasets for the manuscript submitted to GIScience & Remote Sensing

description: The datasets are used for the study "<b>The Hidden Economic Costs of Air Pollution in China: Evidence from Remotely Sensed Nighttime Light Data</b>", which was submitted to GIScience & Remote Sensing.
DOI: 10.6084/m9.figshare.4772170.v1
title: Supplementary Material for: The P-Type ATPase Superfamily

description: P-type ATPases function to provide homeostasis in higher eukaryotes, but they are essentially ubiquitous, being found in all domains of life. Thever and Saier [J Memb Biol 2009;229:115–130] recently reported analyses of eukaryotic P-type ATPases, dividing them into nine functionally characterized and 13 functionally uncharacterized (FUPA) families. In this report, we analyze P-type ATPases in all major prokaryotic phyla for which complete genome sequence data are available, and we compare the results with those for eukaryotic P-type ATPases. Topological type I (heavy metal) P-type ATPases predominate in prokaryotes (approx. tenfold) while type II ATPases (specific for Na<sup>+</sup>,K<sup>+</sup>, H<sup>+</sup> Ca<sup>2+</sup>, Mg<sup>2+</sup> and phospholipids) predominate in eukaryotes (approx. twofold). Many P-type ATPase families are found exclusively in prokaryotes (e.g. Kdp-type K<sup>+</sup> uptake ATPases (type III) and all ten prokaryotic FUPA familes), while others are restricted to eukaryotes (e.g. phospholipid flippases and all 13 eukaryotic FUPA families). Horizontal gene transfer has occurred frequently among bacteria and archaea, which have similar distributions of these enzymes, but rarely between most eukaryotic kingdoms, and even more rarely between eukaryotes and prokaryotes. In some bacterial phyla (e.g. Bacteroidetes, Flavobacteria and Fusobacteria), ATPase gene gain and loss as well as horizontal transfer occurred seldom in contrast to most other bacterial phyla. Some families (i.e. Kdp-type ATPases) underwent far less horizontal gene transfer than other prokaryotic families, possibly due to their multisubunit characteristics. Functional motifs are better conserved across family lines than across organismal lines, and these motifs can be family specific, facilitating functional predictions. In some cases, gene fusion events created P-type ATPases covalently linked to regulatory catalytic enzymes. In one family (FUPA Family 24), a type I ATPase gene (N-terminal) is fused to a type II ATPase gene (C-terminal) with retention of function only for the latter. Several pseudogene-encoded nonfunctional ATPases were identified. Genome minimalization led to preferential loss of P-type ATPase genes. We suggest that in prokaryotes and some unicellular eukaryotes, the primary function of P-type ATPases is protection from extreme environmental stress conditions. The classification of P-type ATPases of unknown function into phylogenetic families provides guides for future molecular biological studies.
DOI: 10.6084/m9.figshare.24235507.v1
title: Studies on the sensitive period of Chinese boys' physical fitness

description: This data has been compiled and edited by myself from relevant data in existing published articles in the field.
DOI: 10.6084/m9.figshare.1192937.v1
title: Lab 4: Field sample training with animals (pan trap)

description: The Pan Trap dataset was collected on the 1st of October 2014 at approximately 4:50pm, in both the grassland and woodlot area at the Keele campus of York University in Toronto, Ontario. It was a wet day as it had rained the night before and towards the end of the lab it was cloudy with showers. At the beginning of the lab, nine bowls of different colours filled with soapy water were placed at intervals in a random site at the grassland area. The soapy water was added to each bowl in order to kill whatever insects entered into it. The bowls were placed in a sequence of light blue, yellow and white so as to observe the insects that were attracted to each colour. Three blue coloured soapy bowls were also placed at a random site in the woodlot area. They were all the same colour as there were no more bowls of the other colours. Also the bowls were placed in a location where there would be minimal disturbance by other members of the lab so as not to scare away the insects. At the end of the lab, the number of insects and the number of different recognizable taxonomic units (RTUs) were determined in both the grassland and the woodlot. In the grassland area, a Large Carpenter Bee (Xylocopoa virginica)-order Hymenoptera, was attracted to one of the yellow bowls, then in one of the blue bowls there was a three-spotted jumping spider (Phidippus audax)-order Araneae. In another blue bowl in the grassland area there was Grasshopper- order Orthoptera and no insects were attracted to the white bowls. In the woodlot, only one insect was observed in all three blue bowls and they are called Aphids- order Hemiptera. A group of four students performed this experiment.
DOI: 10.6084/m9.figshare.28211519.v1
title: Data for Cybersecurity Projects

description: This research highlights the pivotal role of Information and Communication Technologies (ICTs) and robust governance frameworks in urban planning. The global rise of artificial intelligence (AI) has raised significant concerns regarding its environmental, social, and ethical implications. A comprehensive review of smart city cybersecurity strategies reveals critical vulnerabilities, particularly in the context of Morocco's smart cities. The rapid digitization of the banking sector in Morocco has transformed financial services, improving accessibility and convenience for customers, yet it has also introduced substantial cybersecurity challenges as sensitive data moves online. In today’s data-driven world, protecting data from cyberattacks is essential. Traditional cybersecurity measures have struggled to keep pace with evolving threats, rendering conventional algorithms inadequate. Consequently, AI has emerged as a vital tool for enhancing cybersecurity, especially in intrusion detection systems, as it addresses the relentless influx of sophisticated cyber threats, ensuring better protection for digital infrastructures.