cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3515871
title: Oenococcus oeni genome assembly - wine CiEs

description: Genome assembly of three wine-related strains of Oenococcus oeni. New insights into cinnamoyl esterase activity of Oenococcus oeni: Some strains of Oenococcus oeni possess cinnamoyl esterase activity that can be relevant in the<br> malolactic stage of wine production by liberating hydroxycinnamic acids that are precursors of volatile<br> phenol compounds responsible for sensory faults in wine. The objective of this study was to better<br> understand the basis of the differential activity between strains. Remark: The genomes may contain contamination which does not effect the conclusion of the relevant publication about cinnamoyl esterase activity.
description: The sequencing and assembly of these genomes was carried by Chr. Hansen A/S
DOI: 10.5281/zenodo.3515872
title: Oenococcus oeni genome assembly - wine CiEs

description: Genome assembly of three wine-related strains of Oenococcus oeni. New insights into cinnamoyl esterase activity of Oenococcus oeni: Some strains of Oenococcus oeni possess cinnamoyl esterase activity that can be relevant in the<br> malolactic stage of wine production by liberating hydroxycinnamic acids that are precursors of volatile<br> phenol compounds responsible for sensory faults in wine. The objective of this study was to better<br> understand the basis of the differential activity between strains. Remark: The genomes may contain contamination which does not effect the conclusion of the relevant publication about cinnamoyl esterase activity.
description: The sequencing and assembly of these genomes was carried by Chr. Hansen A/S
DOI: 10.17632/f8pwtrmnpj.2
title: Data for: THE ACTIVITY OF AURORA KINASE B IS REQUIRED FOR DENGUE VIRUS RELEASE

description: Flaviviruses, such as Dengue (DENV), Zika, Yellow Fever, Japanese Encephalitis and West Nile are important pathogens with high morbidity and mortality. The last estimation indicates that ~390 millions of people are infected by DENV per year. The DENV life cycle occur mainly in the cytoplasm of the infected cells and different cytoplasmic, nuclear and mitochondrial proteins participate in viral replication. In this paper we analyzed the participation of Aurora kinase B (AurKB) in the DENV replicative cycle using the specific AurKB inhibitor ZM447439. The kinase inhibition does not alter the viral protein production/secretion or genome replication but impaired the viral yield without altering the percentage of infected cells. Moreover, confocal microscopy analysis of DENV-infected ZM447439-treated cells show a delocalization of viral components from the replicative complexes. In summary, these observations indicate that AurKB participate in DENV viral morphogenesis or release.
DOI: 10.17632/vdfzy9xcf5.1
title: Data for: Geochemical characteristics, genetic types and sources of natural gas in the Yingjisu Depression, Tarim Basin, China

description: Geochemical parameters of natural gas and source rock evaluation.
DOI: 10.5281/zenodo.3515893
title: Experimental materials, data and code

description: Experimental materials, data and code.
DOI: 10.5281/zenodo.3515892
title: Experimental materials, data and code

description: Experimental materials, data and code.
DOI: 10.17632/87tng69ch6.1
title: Data for: Mechanical Characterization of the Lateral Collateral Ligament Complex of the Ankle at Realistic Sprain-like Strain Rates

description: The file titled "Data. Mechanical Characterization of the Lateral Collateral Ligament Complex of the Ankle at Realistic Sprain-like Strain Rates" contains the anthropometric data for the donors, ligament lengths, ultimate failure loads and stiffness' (k1) for each ligament of each donor. The raw date for the load and displacement can be found in the "Sample" files for each ligament of each donor.
DOI: 10.5281/zenodo.3515939
title: PsPM-trSP2: SCR measurement in response to aversive/arousing/neutral IAPS pictures while subjected to auditory distractors

description: This dataset includes skin conductance response (SCR) measurements for each of 40 healthy unmedicated participants (20 males and 20 females aged 21.9 +/- 3.8 years) in response to the 16 most arousing negative, the 16 most arousing positive (excluding explicit nude), and the 16 least arousing neutral IAPS pictures, presented for 1 s each in 1 block, while listening to regular or random distractor sounds, as described in Bach et al. (2015). ITI was 4.4 s.
description: See the readme file for more detail. This work was supported by the Wellcome Trust [RJD, Senior Investigator Award 098362/Z/12/Z] and the Senate of Berlin [RJD, Einstein Fellowship]. The Wellcome Trust Centre for Neuroimaging is supported by core funding from the Wellcome Trust 091593/Z/10/Z.
DOI: 10.5281/zenodo.3515896
title: Supplementary Materials to paper: Performance Testing of istSOS Under High Load Scenarios

description: IPython notebook with data used for the analysis and generation of plots for the paper "Performance Testing of istSOS Under High Load Scenarios".
DOI: 10.5281/zenodo.3515897
title: Supplementary Materials to paper: Performance Testing of istSOS Under High Load Scenarios

description: IPython notebook with data used for the analysis and generation of plots for the paper "Performance Testing of istSOS Under High Load Scenarios".
DOI: 10.5281/zenodo.3515955
title: Chronicle of Nature - Phenology of Plants of Zhiguli Nature Reserve

description: Plants Phenology dataset compiled in the context of Chronicle of Nature program in Zhiguli Nature Reserve (Russian Federation) consisting of 86524 records collected during 38 years between 1979 and 2016.
description: This dataset export was created by EarthCape software platform version 18.3.1.40914
DOI: 10.5281/zenodo.3515956
title: Chronicle of Nature - Phenology of Plants of Zhiguli Nature Reserve

description: Plants Phenology dataset compiled in the context of Chronicle of Nature program in Zhiguli Nature Reserve (Russian Federation) consisting of 86524 records collected during 38 years between 1979 and 2016.
description: This dataset export was created by EarthCape software platform version 18.3.1.40914
DOI: 10.7910/dvn/38sias/6rgnki
title: 0 - Master Data Template - 190801.tab

description: Data set for CS, intervention and post-intervention
DOI: 10.15468/po6a3h
title: The Genus Episynlestes Kennedy (Odonata: Synlestidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article G. Theischinger, J. A. L. Watson (1985): The Genus Episynlestes Kennedy (Odonata: Synlestidae). Australian Journal of Entomology 24: 143-148, DOI: http://doi.org/10.5281/zenodo.3515948
DOI: 10.5281/zenodo.3515783
title: Data from: Paule et al. (2020) Phylogenomic insights into the Fascicularia-Ochagavia group (Bromelioideae, Bromeliaceae). Botanical Journal of the Linnean Society (doi: 10.1093/botlinnean/boz085)

description: DNA sequence alignments as well as the input and output files which specify the different data partitioning schemes used for phylogenetic analyses in Paule et al. (2020) Phylogenomic insights into the Fascicularia-Ochagavia group (Bromelioideae, Bromeliaceae). Botanical Journal of the Linnean Society (doi: 10.1093/botlinnean/boz085).
DOI: 10.5281/zenodo.3515784
title: Data from: Paule et al. (2020) Phylogenomic insights into the Fascicularia-Ochagavia group (Bromelioideae, Bromeliaceae). Botanical Journal of the Linnean Society (doi: 10.1093/botlinnean/boz085)

description: DNA sequence alignments as well as the input and output files which specify the different data partitioning schemes used for phylogenetic analyses in Paule et al. (2020) Phylogenomic insights into the Fascicularia-Ochagavia group (Bromelioideae, Bromeliaceae). Botanical Journal of the Linnean Society (doi: 10.1093/botlinnean/boz085).
DOI: 10.5281/zenodo.3515928
title: Dataset accompanying "SECAT: Quantifying differential protein-protein interaction states by network-centric analysis"

description: This repository contains input data, processing parameters and results associated with manuscript "SECAT: Quantifying differential protein-protein interaction states by network-centric analysis". Each archive contains a README.txt file that describes the contents.
DOI: 10.15129/38e49515-9d74-416e-a043-4637f08f0b15
title: Data for: "Photo-oxidation of poly(ethylene terephthalate) films intended for photo-voltaic encapsulation"

description: Infra-red (ATR, DRIFTS), fluorescence, and UV-Visible spectroscopic data plus thermal analysis data (DSC) for PET samples pre and post weathering (Atlas XLS+ Weatherometer).
DOI: 10.25345/c5wt17
title: MassIVE MSV000084481 - SBT00027 Vibrio Orkney Metabolomic profiling of bioactive fermentation extracts of sponge-associated bacterium Vibrio splendidus from the Northern Scottish coastline
title: Metabolomic profiling of bioactive fermentation extracts of sponge-associated bacterium Vibrio splendidus from the Northern Scottish coastline
DOI: 10.25345/c5s092
title: MassIVE MSV000084482 - GNPS-LYH_20191022_PQ_Analogues
title: 20191022_beijing_LYH_GNPS_PQ_Analogues_XIEYUNYING
DOI: 10.5281/zenodo.3516029
title: SheepNet scientific literature database

description: Searchable database containing reviewed and catalogued papers of relevance to the 3 SheepNet themes: reproductive efficiency, gestation efficiency and lamb survival.
DOI: 10.5281/zenodo.3516030
title: SheepNet scientific literature database

description: Searchable database containing reviewed and catalogued papers of relevance to the 3 SheepNet themes: reproductive efficiency, gestation efficiency and lamb survival.
DOI: 10.17632/gksmyhy89r.2
title: miR-181a Restores Mitochondrial Dynamics in Skeletal Muscle Ageing
DOI: 10.17632/6mdt6t67pn.1
title: Endothelial cells under therapy-induced senescence secrete CXCL11, which increases aggressiveness of breast cancer cells

description: Together, our results demonstrated that SASP from endothelial cells experiencing therapy-induced senescence promotes the aggressive behavior of cancer cells, and that CXCL11 could potentially be targeted to prevent the adverse effects of therapy-induced senescent endothelial cells on the tumor microenvironment
DOI: 10.17632/6mdt6t67pn.2
title: Endothelial cells under therapy-induced senescence secrete CXCL11, which increases aggressiveness of breast cancer cells

description: Together, our results demonstrated that SASP from endothelial cells experiencing therapy-induced senescence promotes the aggressive behavior of cancer cells, and that CXCL11 could potentially be targeted to prevent the adverse effects of therapy-induced senescent endothelial cells on the tumor microenvironment
DOI: 10.5519/qd.zdiaboxq
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (739897 records)
DOI: 10.15468/nfltzu
title: The Reduviidae (Hemiptera: Heteroptera) of Alabama, with a morphological key to species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Clem, C. Scott, Swanson, Daniel R., Ray, Charles H. (2019): The Reduviidae (Hemiptera: Heteroptera) of Alabama, with a morphological key to species. Zootaxa 4688 (2): 151-198, DOI: https://doi.org/10.11646/zootaxa.4688.2.1
DOI: 10.5281/zenodo.3461082
title: Data for "Inexperienced preys know when to flee or to freeze in front of a threat"

description: Dataset for the manuscript: "<strong>Inexperienced preys know when to flee or to freeze in front of a threat</strong>” (Accepted for publication in PNAS in October 2019). The file contains: 1/ Data related to Experiment 1 (Looming <em>vs </em>Sweeping stimuli): ‘Speed during (%)’, ‘Speed after (%), ‘Distance traveled during the 30 s following the stimulus offset’ 2/ Data related to Experiment 2 (Looming <em>vs </em>Receding stimuli): ‘Speed during (%)’, ‘Speed after (%), ‘Distance traveled during the 30 s following the stimulus offset’ 3/ Data related to Experiment 3 (Looming <em>vs </em>Dimming stimuli): ‘Speed during (%)’, ‘Speed after (%), ‘Distance traveled during the 30 s following the stimulus offset’ 4/ Data related to the determination of the initiation of the escape in response to the looming stimulus (point by point % of point speed variation during the looming displays)
description: This work was supported by the European Research Council (ERC) FP7/2007-2013 Grant ERC-2011-ADG_20110406, Project 461 295517, Predisposed mechanisms for social orienting (PREMESOR) (to G.V.). Support from Fondazione Caritro Grant Biomarker Disordini dello Spettro Autistico - Autism Spectrum Disorders (DSA) [40102839] and Progetti di Ricerca di Interesse Nazionale (PRIN) 2015 (Neural Bases of Animacy Detection and Their Relevance to the Typical and Atypical Development of the Brain) to G.V. is also acknowledged. E.V. was supported by the Royal Society Research Grant RGS\R1\191185.
DOI: 10.5281/zenodo.3461083
title: Data for "Inexperienced preys know when to flee or to freeze in front of a threat"

description: Dataset for the manuscript: "<strong>Inexperienced preys know when to flee or to freeze in front of a threat</strong>” (Accepted for publication in PNAS in October 2019). The file contains: 1/ Data related to Experiment 1 (Looming <em>vs </em>Sweeping stimuli): ‘Speed during (%)’, ‘Speed after (%), ‘Distance traveled during the 30 s following the stimulus offset’ 2/ Data related to Experiment 2 (Looming <em>vs </em>Receding stimuli): ‘Speed during (%)’, ‘Speed after (%), ‘Distance traveled during the 30 s following the stimulus offset’ 3/ Data related to Experiment 3 (Looming <em>vs </em>Dimming stimuli): ‘Speed during (%)’, ‘Speed after (%), ‘Distance traveled during the 30 s following the stimulus offset’ 4/ Data related to the determination of the initiation of the escape in response to the looming stimulus (point by point % of point speed variation during the looming displays)
description: This work was supported by the European Research Council (ERC) FP7/2007-2013 Grant ERC-2011-ADG_20110406, Project 461 295517, Predisposed mechanisms for social orienting (PREMESOR) (to G.V.). Support from Fondazione Caritro Grant Biomarker Disordini dello Spettro Autistico - Autism Spectrum Disorders (DSA) [40102839] and Progetti di Ricerca di Interesse Nazionale (PRIN) 2015 (Neural Bases of Animacy Detection and Their Relevance to the Typical and Atypical Development of the Brain) to G.V. is also acknowledged. E.V. was supported by the Royal Society Research Grant RGS\R1\191185.
DOI: 10.17632/mbpkm59v29.1
title: Modulating intestinal function by fingolimod contributes to pancreatic immune tolerance in non-obese diabetic mice

description: Gut barrier dysfunction aggravates the progression of type 1 diabetes (T1D). Fingolimod (FTY720) ameliorates numerous preclinical models of colitis, prevents the loss of tight junction proteins in diabetic retinopathy and a variety of barrier related diseases. However, its protective effects on T1D via gastrointestinal route and the underlying mechanisms remain unclear. FTY720 (1 mg/kg) was administered daily to inbred type 1 diabetes prone non-obese diabetic (NOD) mice by gavage. Gut microbiota composition, gut barrier function, gut-pancreas immune responses and T1D incidence were analyzed. The inhibiting effects of FTY720 on the migration of intestinal bacteria/intestinal immune cells to pancreas were further investigated by fluorescence labeling and flow cytometry. The results showed that FTY720 treatment significantly enhanced colonic barrier, suppressed intestinal bacteria translocation to pancreas. Furthermore, FTY720 reduced enteric pathogens Proteobacteria clusters and inhibited it-mediated TLR2/4-NF-κB-NLRP3 pathway, which contributed to suppressed activation of CD45+ leukocyte/CD4+ T cells and their migration to pancreas, reduced T helper type 1 cells (Th1 cells) differentiation, enhanced macrophage polarization to the anti-inflammatory M2 macrophages, thus attenuating T1D as evidenced by reduced T1D incidence and alleviatived insulitis. The inhibition of pancreatic autoimmunity by FTY720 may be also associated with increased regulate T cells (Tregs) in pancreas. Our data demonstrate that FTY720 inhibits pancreas-directed autoimmunity by restoring intestinal homeostasis (microbial homeostasis and immune homeostasis), providing novel insights into the anti-diabetes mechanisms of FTY720.
DOI: 10.17632/mbpkm59v29.2
title: Modulating intestinal function by fingolimod contributes to pancreatic immune tolerance in non-obese diabetic mice

description: Gut barrier dysfunction aggravates the progression of type 1 diabetes (T1D). Fingolimod (FTY720) ameliorates numerous preclinical models of colitis, prevents the loss of tight junction proteins in diabetic retinopathy and a variety of barrier related diseases. However, its protective effects on T1D via gastrointestinal route and the underlying mechanisms remain unclear. FTY720 (1 mg/kg) was administered daily to inbred type 1 diabetes prone non-obese diabetic (NOD) mice by gavage. Gut microbiota composition, gut barrier function, gut-pancreas immune responses and T1D incidence were analyzed. The inhibiting effects of FTY720 on the migration of intestinal bacteria/intestinal immune cells to pancreas were further investigated by fluorescence labeling and flow cytometry. The results showed that FTY720 treatment significantly enhanced colonic barrier, suppressed intestinal bacteria translocation to pancreas. Furthermore, FTY720 reduced enteric pathogens Proteobacteria clusters and inhibited it-mediated TLR2/4-NF-κB-NLRP3 pathway, which contributed to suppressed activation of CD45+ leukocyte/CD4+ T cells and their migration to pancreas, reduced T helper type 1 cells (Th1 cells) differentiation, enhanced macrophage polarization to the anti-inflammatory M2 macrophages, thus attenuating T1D as evidenced by reduced T1D incidence and alleviatived insulitis. The inhibition of pancreatic autoimmunity by FTY720 may be also associated with increased regulate T cells (Tregs) in pancreas. Our data demonstrate that FTY720 inhibits pancreas-directed autoimmunity by restoring intestinal homeostasis (microbial homeostasis and immune homeostasis), providing novel insights into the anti-diabetes mechanisms of FTY720.
DOI: 10.5281/zenodo.3431117
title: Schätzung der Anzahl Insektenarten in der Schweiz

description: Dieser Datensatz enthält in einem Excel-File (*.xlsx) die Daten, welche von Baur und Ungricht für die Schätzung der zu erwartenden Anzahl Insektenarten in der Schweiz herangezogen wurden (Baur & Ungricht 2019, HOTSPOT 40; der betreffende HOTSPOT liegt als PDF in deutscher und französischer Version bei). Das Excel-File besteht aus vier Tabellenblättern (Tab. 1-4), welche auch einzeln im CSV-Dateiformat angefügt sind. Tab. 1: Auflistung der bisher bekannten (Spalte E) bzw. geschätzten Anzahl Arten (Spalten F-H) für die in Kanada vorkommenden Insektenordnungen (bzw. höheren Gruppen). Grundlage ist die in Spalte N aufgeführte Literatur. Zusätzlich werden in den Spalten I-M weitere Daten (etwa die Anzahl BINs) aufgelistet. Tab. 2: Auflistung der bisher bekannten Anzahl Arten (Spalte E) für die einzelnen Insektenordnungen (bzw. höheren Gruppen) der Schweiz. Grundlage ist die in Spalte I aufgeführte Literatur. Die Schätzwerte in Spalten F-H wurden wie folgt berechnet:<br> <strong> Artenzahl geschätzt Kanada / Artenzahl bekannt Kanada * Artenzahl bekannt Schweiz</strong><br> Die Berechnung erfolgte für die minimale, maximale und durchschnittliche Schätzung der Artenzahlen in Kanada. Falls in der kanadischen Quelle nur eine Zahl für die geschätzte unbekannte Artenzahl angegeben wurde, wurde diese von uns als das Maximum angesehen (Tab. 1, Spalte L). Für das Minimum der geschätzten unbekannten Artenzahl (Tab. 1, Spalte K) wurde in diesem Fall 0 angenommen.<br> Beachten Sie, dass alle Formeln auch im Excel-File enthalten sind (Zelle auswählen und Inhalt in der Eingabelinie betrachten). Tab. 3: Vereinigung und Rundung der Schätzwerte. Tab. 4: Literaturverzeichnis.
DOI: 10.5281/zenodo.3431118
title: Schätzung der Anzahl Insektenarten in der Schweiz

description: Dieser Datensatz enthält in einem Excel-File (*.xlsx) die Daten, welche von Baur und Ungricht für die Schätzung der zu erwartenden Anzahl Insektenarten in der Schweiz herangezogen wurden (Baur & Ungricht 2019, HOTSPOT 40; der betreffende HOTSPOT liegt als PDF in deutscher und französischer Version bei). Das Excel-File besteht aus vier Tabellenblättern (Tab. 1-4), welche auch einzeln im CSV-Dateiformat angefügt sind. Tab. 1: Auflistung der bisher bekannten (Spalte E) bzw. geschätzten Anzahl Arten (Spalten F-H) für die in Kanada vorkommenden Insektenordnungen (bzw. höheren Gruppen). Grundlage ist die in Spalte N aufgeführte Literatur. Zusätzlich werden in den Spalten I-M weitere Daten (etwa die Anzahl BINs) aufgelistet. Tab. 2: Auflistung der bisher bekannten Anzahl Arten (Spalte E) für die einzelnen Insektenordnungen (bzw. höheren Gruppen) der Schweiz. Grundlage ist die in Spalte I aufgeführte Literatur. Die Schätzwerte in Spalten F-H wurden wie folgt berechnet:<br> <strong> Artenzahl geschätzt Kanada / Artenzahl bekannt Kanada * Artenzahl bekannt Schweiz</strong><br> Die Berechnung erfolgte für die minimale, maximale und durchschnittliche Schätzung der Artenzahlen in Kanada. Falls in der kanadischen Quelle nur eine Zahl für die geschätzte unbekannte Artenzahl angegeben wurde, wurde diese von uns als das Maximum angesehen (Tab. 1, Spalte L). Für das Minimum der geschätzten unbekannten Artenzahl (Tab. 1, Spalte K) wurde in diesem Fall 0 angenommen.<br> Beachten Sie, dass alle Formeln auch im Excel-File enthalten sind (Zelle auswählen und Inhalt in der Eingabelinie betrachten). Tab. 3: Vereinigung und Rundung der Schätzwerte. Tab. 4: Literaturverzeichnis.
DOI: 10.17632/54brxw7mcx.1
title: Data for: Environmental changes that occurred during the Dan-C2 and Lower C29n hyperthermals (Early Danian) at the Rio Grande Rise, South Atlantic Ocean
DOI: 10.17632/8wj8gpgwmr.2
title: Suspended_Conditions_Muscle_Activity_Acceleration_Force_ICC_Correlation

description: This spreadsheet provides data concerning body center of mass acceleration, muscle activity, and forces exerted during a suspended lunge under different conditions of stability in high-standard track and field athletes. Also, the spreadsheet shows the Interclass Correlation Coeficient (ICC) values for each dependent variable (acceleration, muscle activity and force) and exercise condition. Besides, the correlations values of each suspended lunge between muscle activity, force and acceleration.
DOI: 10.5281/zenodo.3516019
title: Deep convective cloud air parcels

description: The dataset consists of 500 files describing the idealized deep convective cloud air parcels. Values for coordinate (X, Y, Z), velocity components (U, V, W), potential temperature (PTIL), total water content (QT), water vapor (QV), condensate density (QC), precipitation density (QR), net precipitation change (QR_FLUX), relative humidity (RH), buoyancy (BUOY), temperature (T), pressure (P), resolved TKE (KRES), SGS TKE (SGS_TKE), turbulent diffusion (TDIFF) are provided for each parcel at every time step of the simulation.
DOI: 10.5281/zenodo.3516020
title: Deep convective cloud air parcels

description: The dataset consists of 500 files describing the idealized deep convective cloud air parcels. Values for coordinate (X, Y, Z), velocity components (U, V, W), potential temperature (PTIL), total water content (QT), water vapor (QV), condensate density (QC), precipitation density (QR), net precipitation change (QR_FLUX), relative humidity (RH), buoyancy (BUOY), temperature (T), pressure (P), resolved TKE (KRES), SGS TKE (SGS_TKE), turbulent diffusion (TDIFF) are provided for each parcel at every time step of the simulation.
DOI: 10.15468/noxhhx
title: A new species of Mesochila Rivalier, 1969 (Coleoptera: Cicindelidae) from the Brazilian Caatinga

description: This dataset contains the digitized treatments in Plazi based on the original journal article Roza, André Silva, Mermudes, José Ricardo Miras (2019): A new species of Mesochila Rivalier, 1969 (Coleoptera: Cicindelidae) from the Brazilian Caatinga. Zootaxa 4688 (2): 295-300, DOI: https://doi.org/10.11646/zootaxa.4688.2.10