cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.5k54f/12
title: FFL6_S1_L001_R2_001.fastq.gz part 5

description: Final part of the bzip-compressed fastq-file containing raw sequences (reverse reads) from Illumina HiSeq of pooled fungal DNA. Split with HJSplit as recommended by Dryad (http://wiki.datadryad.org/Large_File_Transfer).
DOI: 10.5061/dryad.5k54f/9
title: FFL6_S1_L001_R2_001.fastq.gz part2

description: Second part of the bzip-compressed fastq-file containing raw sequences (reverse reads) from Illumina HiSeq of pooled fungal DNA. Split with HJSplit as recommended by Dryad (http://wiki.datadryad.org/Large_File_Transfer).
DOI: 10.5061/dryad.60h3r/1
title: AB-Phage_experiment

description: Antibiotic-Phage experiment dataset
DOI: 10.5061/dryad.6275j/1
title: Encounter history matrix (Headed format for E-SURGE)

description: H:C1 to H:C 30: (0) - not seen (1) Prebreeder2 (2)Prebreeder1 (3) Breeder2 (4)Breeder1  
S:Sample 
$COV:Tagtype Inner or outer interdigital tag
COV:mass: standardized weaning mass  
COV:mass2: standardized weaning mass squared  
COV:massSP1: weaning mass spline 1
COV:massSP2: weaning mass spline 2
DOI: 10.5061/dryad.6j9j4/1
title: O3M_Marmot_DATA

description: This Rdata file provides the data used int the real data application on fitness variation with age in the Alpine marmot as presented in the publication "Testing determinants of the annual individual fitness: an overall mean mixture model for de-lifing data" by Pierre Dupont, Dominique Allainé, Aurélie Cohas & Roger Pradel.
DOI: 10.5061/dryad.6mj52/1
title: Raw data

description: The raw data file contains files relevant to data extraction, data analysis and other data relevant with contents in supplementary files
DOI: 10.5061/dryad.88365/1
title: JAE-2017-00477
DOI: 10.5061/dryad.8b8d1/1
title: personality_remains_data

description: Data used for the study 'Personality remains: no effect of three-week social status experience on personality in male fowl' by Anna Favati, Eva Udén, Olof Leimar and Hanne Løvlie.
DOI: 10.5061/dryad.bm770/1
title: cross_toothSize

description: R/qtl cross object with molar size and genetic data
DOI: 10.5061/dryad.cp40s/11
title: Pciris_reads_6of6

description: 100bp SR sequence reads from an illumina Hiseq 2500 for Passerina ciris. Library prepped via ddRAD protocol with enzymes sbf1 and msp1. Reads were demultiplexed in pyrad v 3-0-65 (command "pyrad -p params.txt -s 1") but have had no other processing.
DOI: 10.5061/dryad.cp40s/9
title: Pciris_reads_4of6

description: 100bp SR sequence reads from an illumina Hiseq 2500 for Passerina ciris. Library prepped via ddRAD protocol with enzymes sbf1 and msp1. Reads were demultiplexed in pyrad v 3-0-65 (command "pyrad -p params.txt -s 1") but have had no other processing.
DOI: 10.5061/dryad.cp486/1
title: Microsatellite data for samples of Dorylus molestus and D. wilverthi in Kakamega Forest

description: Colony samples from 50 colonies collected in Kakamega Forest, Kenya in 2012. Samples are genotyped at 12 microsatellite loci.
DOI: 10.5061/dryad.df59k/1
title: Supplementary  material
DOI: 10.5061/dryad.f4ts3/1
title: Hypocryphalus alignment and tree

description: Molecular data matrix and phylogenetic tree
DOI: 10.5061/dryad.jf715/1
title: Revised data matrix used in the cladistic analysis of pareiasauromorph interrelationships

description: This matrix corresponds to the revised characters and character states in this study. ‘?’ denotes missing data. Abbreviations: Ba., Bashkyroleter; Br., Bradysaurus; P., Pareiasuchus.
DOI: 10.5061/dryad.kv02g/10
title: Raw abundance table before filtering

description: This XLSX file contains the number of reads for each distinct variant of the MiSeq run and for each PCR product before the data filtering process.
DOI: 10.5061/dryad.kv02g/11
title: Abundance table after filtering

description: This XLSX file contains the number of reads for each distinct variant of the MiSeq runs and each sample after the data filtering. The results for the three PCR replicates of a same sample were summed. The sheet "Bat faecal samples" contains the results for the faecal pellets from bats, and the sheet "Mock communities" contains the results for the arthropod mock communities.
DOI: 10.5061/dryad.kv02g/2
title: MiSeq raw sequences of the COI minibarcode from the faecal pellets of 357 bats from Western France (part 1 to 2)

description: This ZIP file contains the FASTQ files of the paired-end reads (R1: reads 1; R2: reads 2) produced for each faecal pellet in triplicate using the MiSeq platform. The 1162 multiplexed PCR products were indexed using both forward and reverse indices. The list of the 357 multiplexed samples and the 24 positive and 58 negative controls are provided in the following XLSX file titled: Information concerning the samples multiplexed in the MiSeq Run.
DOI: 10.5061/dryad.kv02g/3
title: MiSeq raw sequences of the COI minibarcode from the faecal pellets of 357 bats from Western France (part 2 to 2)

description: This ZIP file contains the FASTQ files of the paired-end reads (R1: reads 1; R2: reads 2) produced for each faecal pellet in triplicate using the MiSeq platform. The 1162 multiplexed PCR products were indexed using both forward and reverse indices. The list of the 357 multiplexed samples and the 24 positive and 58 negative controls are provided in the following XLSX file titled: Information concerning the samples multiplexed in the MiSeq Run.
DOI: 10.5061/dryad.kv02g/4
title: MiSeq raw sequences of the COI minibarcode from 24 positive controls and 58 negative controls

description: This ZIP file contains the FASTQ files of the paired-end reads (R1: reads 1; R2: reads 2) produced for each faecal pellet in triplicate using the MiSeq platform. The 1162 multiplexed PCR products were indexed using both forward and reverse indices. The list of the 357 multiplexed samples and the 24 positive and 58 negative controls are provided in the following XLSX file titled: Information concerning the samples multiplexed in the MiSeq Run.
DOI: 10.5061/dryad.kv02g/5
title: MiSeq raw sequences of the COI minibarcode from arthropod mock communities MC1 & MC2

description: This ZIP file contains the FASTQ files of the paired-end reads (R1: reads 1; R2: reads 2) produced using the MiSeq platform for each individual PCR and the pools of the arthropod mock communities in triplicate. The 1162 multiplexed PCR products were indexed using both forward and reverse indices. The list of the 357 multiplexed samples and the 24 positive and 58 negative controls are provided in the following XLSX file titled: Information concerning the samples multiplexed in the MiSeq Run.
DOI: 10.5061/dryad.kv02g/6
title: Raw output files generated by the mothur program

description: This ZIP file contains three output files (.table, .fasta and .log) generated by the mothur program for the whole COI minibarcode dataset. The .log file contains all the mothur command lines used for the processing of the raw sequences.
DOI: 10.5061/dryad.kv02g/9
title: Information concerning the samples and positive and negative controls multiplexed in the MiSeq run

description: This XLSX file contains the sample IDs, the sample types, the PCR IDs, the PCR replicate numbers, the localities, the bat species and the fastq file names for each of the 1162 PCR products multiplexed in the Illumina MiSeq run.
DOI: 10.5061/dryad.m00q4/1
title: Fragaria_Baits_v2
DOI: 10.5061/dryad.m00q4/2
title: Morphological data of F1 progeny
DOI: 10.5061/dryad.m00q4/3
title: Targeted capture genotypes of F1 progeny
DOI: 10.5061/dryad.mc02p/1
title: Test data for the unrestricted viewing condition

description: This file contains all bee choices for the 20 choices of each test (learning, transfer 1 and transfer 2) for bees in the unrestricted viewing condition (rotating screen apparatus).
DOI: 10.5061/dryad.mc02p/2
title: Learning phase data for the restricted and unrestricted viewing conditions

description: This file contains all choices for each bee during the 80 conditioned choices of the learning phase for bees trained under both restricted and unrestricted viewing conditions.
DOI: 10.5061/dryad.n33g2/1
title: "Current" beetle distributions at Moor House NNR (2008 and 2013)

description: Abundance and presence/absence data for dung beetle species at Moor House NNR in 2008 and 2013 across elevation gradients from 300 m a.s.l.
DOI: 10.5061/dryad.n33g2/2
title: Thermal tolerance data

description: Data from thermal tolerance testing
DOI: 10.5061/dryad.n4120/1
title: foodweb data
DOI: 10.5061/dryad.p4q04/15
title: PET DICOM part 12
DOI: 10.5061/dryad.p4q04/19
title: PET DICOM part 16
DOI: 10.5061/dryad.p4q04/3
title: NIFTI-MRI-defaced-MEMTRAIN
DOI: 10.5061/dryad.p85m5/1
title: SI_1

description: Supplementary file 1 Tables S1-S8 accompanying the publication Population transcriptomics in Daphnia: the role of thermal selection, Maike Herrmann, Suda Parimala Ravindran, Klaus Schwenk and Mathilde Cordellier. For the Table of Contents please refer to the README file.
DOI: 10.5061/dryad.p85m5/2
title: SI_2

description: Supplementary file 2 Tables S9-S11 accompanying the publication Population transcriptomics in Daphnia: the role of thermal selection, Maike Herrmann, Suda Parimala Ravindran, Klaus Schwenk and Mathilde Cordellier. For the Table of Contents please refer to the README file.
DOI: 10.5061/dryad.p85m5/3
title: SI_3

description: Supplementary file 3 Tables S12-S19 accompanying the publication Population transcriptomics in Daphnia: the role of thermal selection, Maike Herrmann, Suda Parimala Ravindran, Klaus Schwenk and Mathilde Cordellier. For the Table of Contents please refer to the README file.
DOI: 10.5061/dryad.p85m5/4
title: SI_4

description: Supplementary file 4 accompanying the publication Population transcriptomics in Daphnia: the role of thermal selection, Maike Herrmann, Suda Parimala Ravindran, Klaus Schwenk and Mathilde Cordellier. Amino acid sequence translations of D. galeata transcripts and the reference candidate genes
DOI: 10.5061/dryad.p85m5/5
title: Fig_S1

description: Supplementary file 5 Figure S1 accompanying the publication Population transcriptomics in Daphnia: the role of thermal selection, Maike Herrmann, Suda Parimala Ravindran, Klaus Schwenk and Mathilde Cordellier. Sample to sample distances heat map created with DESeq2, based on read counts after regularized-logarithm transformation. Each row/column corresponds to a single biological replicate.
DOI: 10.5061/dryad.pd959/21
title: wPars.csv

description: Data needed by IdahoIPMFunctions.R
DOI: 10.5061/dryad.q5p8q/1
title: R scripts and results for figures in Burgess, Snyder, Rountree

description: The .zip file contains R scripts (.R) and script results (.RData and .dat) for all figures presented in Burgess, Snyder, Rountree. Script result files are provided because some code takes several hours to run on a laptop, or has been parallelized to run on a large cluster, which many users might not have access to.
DOI: 10.5061/dryad.q680n/1
title: DATA

description: graph data points
DOI: 10.5061/dryad.q6p50/1
title: InputData15N

description: master data file
DOI: 10.5061/dryad.q6p50/2
title: InputDataSite

description: Site level data
DOI: 10.5061/dryad.q6p50/3
title: InputBAI01

description: Basal Area Index data for trees from tree rings
DOI: 10.5061/dryad.q9b11/1
title: Observed Savanna Distribution
DOI: 10.5061/dryad.q9b11/2
title: Predicted Savanna distribution for Asia
DOI: 10.5061/dryad.r5v8d/1
title: MayerlandBlob2017

description: Data used for statistical analyses of kinematics and muscle architecture.
DOI: 10.5061/dryad.rv0nv/4
title: Supplementary Table 4

description: List of primers used in real-time PCR analysis.
DOI: 10.5061/dryad.t1778/1
title: Soil Volumetric Water Content Jan 27-June 18 2015

description: This file includes the raw voltage readings as well as the calculated volumetric water content readings from four different sensors for each soil type (serpentine and sandstone) at Jasper Ridge Biological Preserve. Two replicates were placed at two different locations on each soil type (see README file for a diagram for the approximate locations of each sensor).
DOI: 10.5061/dryad.t1778/2
title: Greenhouse flowering time data for serpentine and sandstone populations

description: Data collected at the Michigan State University greenhouse on serpentine "Serp" or sandstone "Sand" soil in two treatments- "Dry" vs. "Control". 'Pop' indicates the population source, 'Initial Flat' refers to the flat/position of the individual before being assigned to a treatment. 'treatment_flat' refers to the flat replicate (nested within treatment- either 1 or 2). 'Plant' is a unique number for each plant on each flat, 'Date_Planted' is the day that each individual was transplanted, 'Flower_Day' is the first day that each plant was observed to flower (Day 0=first day of transplant/Feb 11), and the first plant to flower was on Day 27 (corresponding to March 10).
DOI: 10.5061/dryad.t1778/3
title: Flowering time of the serpentine and sandstone populations in the field

description: This data was collected on the parental populations (serpentine and sandstone) on their native soil types at Jasper Ridge Biological Preserve during years 2012-2015. Here, 'Rep' refers to the replicate plot (nested within year and soil type). Years 2012-2013 only had one replicate plot on each soil type. The 'Flat_transplant' is the day each individual was transplanted to the flat filled with field soil, and the 'Field_transplant' is the day each individual was transplanted from the flat to the field. Field.Row and Field.Column are the Row/Column positions for each plant in the field plots, 'Edge' plants were directly on the outer edge of each plot, while 'Inner' plants include everything else. The date of first flower is listed in addition to the day of first flower. Day #1 is the day the first plant flowered in that year.
DOI: 10.5061/dryad.t1778/4
title: Flowering time and fitness (survival, number of flowers, number of fruits) for the F5 advanced-generation hybrids on each soil type (serpentine or sandstone) during 2012-2015

description: This data was collected at Jasper Ridge Biological Preserve during years 2012-2015. Here, 'Rep' refers to the replicate plot (nested within year and soil type). Years 2012-2013 only had one replicate plot on each soil type. The 'Flat_transplant' is the day each individual was transplanted to the flat filled with field soil, and the 'Field_transplant' is the day each individual was transplanted from the flat to the field. Field.Row and Field.Column are the Row/Column positions for each plant in the field plots, 'Edge' plants were directly on the outer edge of each plot, while 'Inner' plants include everything else. The date of first flower is listed in addition to the day of first flower. Day #1 is the day the first plant flowered in that year. 'Surv_flr' is whether or not the plant survived to flower, and 'NumFlowers'  and 'NumFruits' is the number of flowers or fruits each plant produced.
DOI: 10.5061/dryad.v0n1p/1
title: Plant and ant communities along a habitat loss gradient

description: The file consists of three sheets: "Plants", "Ants" and "Gradient". Plants and Ants are sites x species matrices. Sites are structured as following: "Landscape" is the landscape sampling region (2 x 2 km), in which 3 local sampling units (70 x 70 m), "Unit", are allocated. For Plants each "Unit" is sampled with 9 plots, "Plot". Gradient contains the percentage of grassland remnants, "percent_remGrassland", and the "Latitude" and "Longituted" of each "Landscape".
DOI: 10.17632/2z8c66h6s4.1
title: Data for: An analysis of cumulative risks based on biomonitoring data for six phthalates using the Maximum Cumulative Ratio

description: There are three files. Reyes_EnvironInter_Phthalates_MCR.CSV - Provides the raw data downloaded from NHANES and calculated findings (including dose, hazard quotients, hazard indices, and MCR values) for each individual considered in the analysis. Reyes_EnvironInter_Phthalates_MCR_definitions.csv - Provides definitions for the parameters names used in Reyes_EnvironInter_Phthalates_MCR.CSV. Reyes_EnvironInter_Phthalates_metabolites.csv - Provides additional data used to determine the doses of metabolites.
DOI: 10.17632/3r7k6t4nbc.1
title: Data for: Passive solutions for thermal comfort and energy conservation A case study for the Hot Summer and Cold Winter climate in the Yangtze River region

description: the raw data of Fig. 5 and fig. 6 in the paper
DOI: 10.17632/3zxw5mfv66.1
title: Data for: Metallopolia, a new subgenus of Polia (Noctuidae, Noctuinae, Hadenini), with the description of two new species and a new subspecies

description: Description of a new subgenus of the diverse Holarctic Polia from the south-eastern Palaearctic with the description of two new species from W China and one new subspecies from Nepal. Diagnoses of the new subgenus and species/subspecies are given. The taxa are depicted in full color. The genital structures are depicted, incl. all primary types of the concerned species. The work is a contribution to the project: Revision of the Holarctic subtribe Poliina (Noctuidae, Hadenini), principal investigator is Z. Varga The new subgenus is confined to one of the most important centres of species diversity in Eurasia.
DOI: 10.17632/5x3m2tz632.1
title: Data for: The Rotational Spectrum and Complete Heavy Atom Structure of the Chiral Molecule Verbenone

description: Parent file fits in SPFIT/SPCAT
DOI: 10.17632/hrdp5vpyfr.1
title: Data for: Factors Driving Natural Regeneration Beneath a Planted Urban Forest

description: Metadata and raw data for woody plant recruitment at Kissena Corridor Park
DOI: 10.5061/dryad.113v0/1
title: LAD1

description: liana seedling census and canopy height data for the site LAD1, located in Parque Natural Metropolitano
DOI: 10.5061/dryad.113v0/2
title: LAD2

description: liana seedling census and canopy height data for the site LAD2, located in Cerro Galera, on the west side of the Pacific entrance of the Panama Canal
DOI: 10.5061/dryad.113v0/3
title: LAM1

description: liana seedling census and canopy height data for the site LAM1, located in PIPE LINE ROAD, Parque Soberania,  CTFS site P 15
DOI: 10.5061/dryad.113v0/4
title: LSM2

description: liana seedling census and canopy height data for the site LSM1, located in PARQUE NACIONAL CHAGRES, main entrance
DOI: 10.5061/dryad.113v0/5
title: LAW1

description: liana seedling census and canopy height data for the site LAW1, located in Parque Natcional San Lorenzo, Road to San Lorenzo Fort, CTFS site P 2
DOI: 10.5061/dryad.1cn6b/1
title: Shaoetal_SupplementaryData

description: This file contains four data matrices for the phylogenetic analyses in Shao et al.
DOI: 10.5061/dryad.1g53b/1
title: AllMammalPhotos_archive

description: This file contains a row for each photo image recorded on camera traps during this study. The study was conducted during Summer and Fall months of 2013 and 2014 on the grounds of the Smithsonian Conservation Biology Institute in Front Royal, Virginia USA. All records of birds and humans have been removed. Cameras were established in pairs with a treatment camera (set up with a log in view, or on a game trail) and a nearby random location. End Date refers to the date after which at last one camera in the pair stopped functioning. All photo records from BOTH cameras in the pair taken after this date were removed. The grounds of the study area were divided into grids (500m by 500m) and grids not containing forest were not used. Grid codes are included with each image as is the UTM coordinate of the camera station (UTM Zone 17). "UnderCat" is a three level descriptor for level of understory vegetation at the site. "LogD" refers to log diameter in centimeters, and "TrailQ" is a scale of trail quality, with 1 being the highest quality. "PairDist_m" is the distance between the two cameras in the pair, in meters. All other details are explained in the manuscript. NOTE: Photograph capture times for deployment SCBI2013.4T are 7 hrs ahead of the actual photo time. The Date and Time listed for photos from Deployment SCBI2013.37C are incorrect and could be rectified. Photos all occurred between the deployment and pull dates, but times and actual dates are incorrect for each photo.
DOI: 10.5061/dryad.1g53b/2
title: CameraStationVegetationData

description: This file contains all the vegetation measurements taken at each camera station pair. Cameras were set up in the Summer and Fall seasons of 2013 and 2014 on the grounds of the Smithsonian Conservation Biology Institute in Front Royal, VA USA. Cameras were only established in forest habitat. Camera stations were made up of pairs of cameras, one at a log feature or game trail, the other at a random nearby location. Vegetation measurements were taken at the midpoint between the two cameras. In addition to the PairID, Grid location, and vegetation sampling date, 4 vegetation variables are included. "CovAll" is the overall level vegetative cover percentage recorded as the average percent of a 2-m high cover pole obscured from 10 m away in each cardinal direction. Cover pole was divided in 20 1-dm sections. Data were recorded as the percentage of 1-dm sections obscured ( &gt;50%) by vegetative or structural cover. "CovLow" is the average percent of low portion (&lt;0.5 m) of cover pole obscured by vegetative or structural cover. "UnderStem_D"	is the number of woody stems &gt;1.5 m in height and &lt;7.5 cm dbh counted within 3 arm's-length transects, divided by 33 square meters. Transect were parallel, 20-m transects extending perpendicular to the aspect of the plot. Transects were placed both through the actual sampling location as well as 10 m up and down slope of location."OverStem_D" is the number of woody stems &gt;7.5 cm dbh counted within 3 arm's-length transects, divided by 33 square meters. Transects used were same as for "UnderStem_D".
DOI: 10.5061/dryad.1q778/10
title: Methylation level for LTR-RT and its up or downstream region in indica genome and its orthologous region in japonica
DOI: 10.5061/dryad.1q778/4
title: indica genome LTR-RT and nearby host gene and the host genes' expression values
DOI: 10.5061/dryad.1q778/5
title: japonica genome LTR-RT methylation levels
DOI: 10.5061/dryad.1q778/6
title: indica genome LTR-RT methylation levels
DOI: 10.5061/dryad.1q778/7
title: japonica genome LTR-RT up and downstream region methylation levels
DOI: 10.5061/dryad.1q778/8
title: indica genome LTR-RT up and downstream region methylation levels
DOI: 10.5061/dryad.1q778/9
title: Methylation level for LTR-RT and its up or downstream region in japonica genome and its orthologous region in indica
DOI: 10.5061/dryad.2hv6c/1
title: Biotropica_Doughty__data

description: Monthly carbon cycling data (total NPP and autotrophic respiration) for all plots mentioned in the paper.  Mean plot characteristics such as soil chemistry, texture, temperature, and precipitation also listed.
DOI: 10.5061/dryad.394sc/1
title: Foraging Behavior and Solenopsis invicta foraging gene expression

description: Behavioral and qPCR data for statistical analyses red imported fire ant colonies.  Data includes extra-nest activity, exploratory activity, recruitment to artificial nectar and crickets, foraging activity at a stable dry diet, and weight of dry diet collected. Data also includes qPCR expression data for Solenopsis invicta foraging (sifor) relative to actin. Data was collected from standardized colony replicates in a standardized laboratory environment.