cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15125/bath-00176
title: The causal role of breakfast in energy balance and health: a randomized controlled trial in obese adults

description: Background: The causal nature of associations between breakfast and health remain unclear in obese individuals.
Objective: To conduct a randomized controlled trial examining causal links between breakfast habits and components of energy balance in free-living obese humans.
Design: The Bath Breakfast Project is a randomized controlled trial with repeated-measures at baseline and follow-up amongst a cohort in South-West England aged 21-60 y with Dual-Energy X-Ray Absorptiometry (DXA)-derived fat mass indices ≥13 kg·m-2 (women; n=15) and ≥9 kg·m-2 (men; n=8). Components of energy balance (resting metabolic rate, physical activity thermogenesis, DIT, energy intake) were measured under free-living conditions with random allocation to daily breakfast (≥700 kcal before 1100 h) or extended fasting (0 kcal until 1200 h) for 6 weeks, with baseline and follow-up measures of health markers (e.g. hematology/adipose biopsies).
Results: Breakfast resulted in greater physical activity thermogenesis during the morning than when fasting during that period (difference:188 kcal·d-1; 95%CI=40, 335) but without any consistent effect on 24-h physical activity thermogenesis (difference:272 kcal·d-1; 95%CI= -254, 798). Energy intake was not significantly greater with breakfast than fasting (difference:338 kcal·d-1; 95%CI=-313, 988). Body mass increased across both groups over time but with no treatment effects on body composition nor any change in RMR (stable within 8 kcal·d-1). Metabolic/cardiovascular health also did not respond to treatments, except for a reduced insulinemic response to OGTT over time with daily breakfast relative to an increase with daily fasting (p=0.05). 
Conclusions: In obese adults, daily breakfast causes greater physical activity during the morning, whereas morning fasting results in partial dietary compensation (i.e. greater energy intake) later in the day. There were no differences between groups in weight change and most health outcomes but insulin sensitivity was increased with breakfast relative to fasting.

Note on this version: This version includes a corrected spreadsheet - cells G14 - G24 had incorrect values in the first version of this dataset.
DOI: 10.15125/bath-00365
title: Data set for "Acceleration of Convergence to Equilibrium in Markov Chains by Breaking Detailed Balance"

description: Simulation result and Matlab code used in the paper "Acceleration of Convergence to Equilibrium in Markov Chains by Breaking Detailed Balance"
DOI: 10.13145/bacdive6058.20240510.9
title: Halomonas arcis Xu et al. 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00591
title: Dataset for "Alkali activation behaviour of un-calcined montmorillonite and illite clay minerals"

description: Chemical characterisation data describing the precursors and cured products formed when reacting montmorillonite and illite clay precursors with sodium hydroxide solution at Na:Al molar ratios of 0-1.5 and 0-0.75.

Version 2 includes additional data for the mass spectrometry results.
description: Fig 1; Fig A2 - Atterberg plastic limit measurements were taken over a range of sodium hydroxide solution concentrations, based on BS 1377-2:1990.

Fig 2; Fig 3; Fig 4; Fig A1; Fig A3  - Powder X-ray diffraction (PXRD) analysis was done to identify phases with a Bruker D8 Advance instrument using monochromatic CuKalpha1 L3 (λ = 1.540598 Å) X-radiation and a Vantec superspeed detector. A step size of 0.016⁰(2θ) and step duration of 0.3 seconds were used.

Fig 7; Fig 8; Fig A5; - Thermogravimetric analysis (TGA) was done to characterise thermal behaviour, using a Setaram Setsys Evolution TGA over a range of 30 to 1000 °C at a heating rate of 10 °C/minute. An air atmosphere was used, with a flow rate of 20 ml/minute. A connected mass spectrometer was used (Pfeiffer Omni) to identify whether evolved gas species contained OH, H2O, CO or CO2. 

Fig 9; Fig 10 - Magic angle spinning (MAS) nuclear magnetic resonance (NMR) spectra were measured for 27Al and 29Si to characterise coordination states, using a Varian VNMRS in direct excitation. Standards used were 1M aq. Al(NO3)3 for 27Al and tetramethylsilane for 29Si. Spin rates used were 12 kHz for 27Al and 6 kHz for 29Si, and frequencies used were 104.199 kHz for 27Al and 79.435 MHz for 29Si. Sample holders were 4mm width for 27Al and 6mm width for 29Si. 

Fig 11; Fig A6 - Fourier Transform Infrared Spectroscopy (FTIR) was done to characterise molecular bonding, using a Perkin-Elmer Frontier with a diamond Attenuated Total Reflectance (ATR) head. Spectra were collected over a range of 4000-600 cm-1 using a resolution of 4cm-1 and 5 scans per spectrum.
description: Fig 2; Fig 3; Fig 4; Fig A1; Fig A3 - Patterns were corrected for sample height shift by calibrating to the most intense quartz reflection (101) at 26.6 °(2θ).

Fig 3 - Le Bail extractions and Rietveld refinements of the structure were performed using JANA 2006 to extract the background signal.

Fig 11; Fig A6 - Corrections were made for ATR and background using Perkin-Elmer Spectrum software.
DOI: 10.13145/bacdive6059.20240510.9
title: Halomonas subterranea Xu et al. 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6060.20240510.9
title: Halomonas korlensis Li et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00790
title: Dataset for "Developing non-exercise activity thermogenesis (NEAT) through building design"

description: This data is associated with the research study "Developing non-exercise activity thermogenesis (NEAT) through building design", carried out to assess the relationships between physical activity and building design for 75 buildings in the Greater Jakarta region, Indonesia. It includes the survey used to collect the data (Appendix A), the responses collected from the survey (Appendix B), and subsequent analysis carried out on the survey data to generate a set of scores for the buildings.

The data has been anonymised, so no identifying information about individuals or buildings can be found within this dataset.
description: The surveyed buildings were in the Greater Jakarta Metropolitan Area (Jabodetabek). The sample was focused on – but not restricted to – office buildings. It was aimed to get responses from a range of building heights, from low to high rise. The survey was distributed by sending to people known to the authors. Surveys were completed by one respondent on behalf of all building users. 75 complete responses were received.

An introduction to the data is given on the cover page of Appendix B and Appendix C. The survey response data (Appendix B) is ordered in the same order as the questions in the survey. The buildings score data (Appendix C) is calculated according to the procedure explained in the associated manuscript.
description: The survey responses data was anonymised before publication, to remove all identifying information of individuals and buildings.
description: Further relevant documentation may be found in the following resources.

   Marsh, A., Gleed, F., Peacock, O., Coley, D., and Codinhoto, R.,  2022.   Developing non-exercise activity thermogenesis (NEAT) through building design.    Facilities, 40(11/12), 737-756.   Available from: https://researchportal.bath.ac.uk/en/publications/developing-non-exercise-activity-thermogenesis-neat-through-build.
DOI: 10.13145/bacdive6061.20240510.9
title: Halomonas alkaliphila Romano et al. 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00664
title: Data sets for the Frontiers in Materials article entitled "Structure of the intermediate phase glasses GeSe3 and GeSe4: The deployment of neutron diffraction with isotope substitution"

description: Data sets used to prepare Figures 1-13 in the Frontiers in Materials article entitled "Structure of the intermediate phase glasses GeSe3 and GeSe4: The deployment of neutron diffraction with isotope substitution."  The figures show (i) the measured neutron diffraction results and (ii) a comparison of several of the neutron diffraction results with those obtained from first principles molecular dynamics simulations. The data sets were created using the methodology described in the manuscript.  The files are labelled according to the figure numbers. Each of the plots was drawn using QtGrace (https://sourceforge.net/projects/qtgrace/). The data set corresponding to a plotted curve within an QtGrace file can be identified by clicking on that curve. Once a data set has been identified, it can be exported in ASCII format via the DATA tab. The units for each axis are identified on the plots. An explanation of each figure is documented in the README file, and in the published paper.
description: The data sets were collected using the methods described in the published paper.
description: The data sets were analysed using the methods described in the published paper.
description: Figures 1 - 13 were prepared using QtGrace  (https://sourceforge.net/projects/qtgrace/). The data set corresponding to a plotted curve within an QtGrace file can be identified by clicking on that curve. Once a data set has been identified, it can be exported in ASCII format via the DATA tab.
description: As compared to version 1, the order of figures 6 & 7 has been reversed.
description: Further relevant documentation may be found in the following resources.

   Rowlands, R. F., Zeidler, A., Fischer, H. E., and Salmon, P. S.,  2019.   Structure of the Intermediate Phase Glasses GeSe3 and GeSe4: The Deployment of Neutron Diffraction With Isotope Substitution.    Frontiers in Materials, 6.  Available from: https://doi.org/10.3389/fmats.2019.00133.
DOI: 10.15125/bath-00923
title: Temporal Climate Impacts

description: Spreadsheet to facilitate the calculation of time-dependent Absolute Global Warming Potential and Absolute Global Temperature Potential due to a temporally resolved (year by year) emissions inventory (CO2, CH4, other well-mixed forcers, and examples of short-life forcers). Examples and instructions are included within the spreadsheet. The spreadsheet is intended to be a tool for LCA practitioners to quickly assess whether temporal aspects of GHG results are relevant and should be reported upon.
description: Further explanation provided in Cooper, S.J.G., R. Green, L. Hattam, M. Roeder, A. Welfle, M. McManus, "Exploring temporal aspects of climate-change effects due to bioenergy" Biomass and Bioenergy (in press).

Equations, data and parameters referenced in spreadsheet. In particular, these are consistent with IPCC AR5 (Physical science basis):
Myhre, G., D. Shindell, F.-M. Bréon, W. Collins, J. Fuglestvedt, J. Huang, D. Koch, J.-F. Lamarque, D. Lee, B. Mendoza, T. Nakajima, A. Robock, G. Stephens, T. Takemura and H. Zhang, 2013: Anthropogenic and Natural Radiative Forcing. In: Climate Change 2013: The Physical Science Basis. Contribution of Working Group I to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change [Stocker, T.F., D. Qin, G.-K. Plattner, M. Tignor, S.K. Allen, J. Boschung, A. Nauels, Y. Xia, V. Bex and P.M. Midgley (eds.)]. Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA.
description: The spreadsheet is best viewed in MS Excel.
DOI: 10.15125/bath-00941
title: Dataset for "Adjusting organic load as a strategy to direct single-stage food waste fermentation from anaerobic digestion to chain elongation"

description: This dataset includes the results summary from a lab-scale bioreactor experiment as discussed in the research paper with the same name, published at Processes MDPI (De Groof, V.; Coma, M.; Arnot, T.C.; Leak, D.J.; Lanham, A.B. Adjusting Organic Load as a Strategy to Direct Single-Stage Food Waste Fermentation from Anaerobic Digestion to Chain Elongation. Processes 2020, 8, 1487.). 

The study comprised two operational phases of duplicate reactors fed with food waste, each set to target a different product. The data comprises a summary on feedstock composition, microbial community analysis and operational conditions and product outcome per operational phase. The archaeal and bacterial community data includes the final sequences of the operational taxonomic units found and their relative abundance in each sample as determined by 16s rRNA amplicon sequencing. The raw data files have been submitted in the specialized EMBL-EBI database and are available under the accession number PRJEB39281.
description: Analytical
description: This dataset was prepared and processed in Microsoft Excel from raw analytical data. The bioinformatic processing prior to the microbial community summary in the spreadsheet was done as outlined in the publication, and results were processed via the DNASense data analysis app (applies Rstudio IDE v.3.5.1 with the ampvis v.2.5.8. package).
description: This version includes rarefaction curves and values of alpha-diversity, richness and evenness per sample in the OTU_table tab.
DOI: 10.13145/bacdive6063.20240510.9
title: Halomonas ilicicola Arenas et al. 2009

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00948
title: Datasets for “OmniPhotos: Casual 360° VR Photography”

description: This dataset contains the raw and processed data used to validate the results for the paper. Each subdirectory in the Preprocessed and Unprocessed folders contains a 360° video captured in a circle at different locations in the world, using an Insta360 One X 360° camera on a rotating selfie stick. These subdirectories are named after these locations. Both the proprietary (.insv) video format, as well as a stitched equirectangular (.mp4) video (used by our preprocessing pipeline), have been included. As well as these videos, each subdirectory contains the Input frames, used by our software to display the scene, a Capture directory that contains structure-from-motion data for the given scene, as well as a Config directory, which contains necessary configuration files to run our software.

In the Preprocessed directory, the subdirectories also contain a Cache directory, containing optical flow (.floss) files, a CSV file linking the floss files to the relevant images in Input, and .obj files that contain the scene-dependent proxy mesh (deformed sphere) used to render the scene.
description: Full details of the methodology may be found in the associated paper.
description: Version 2 corrects two issues in Version 1:
1. The first scene in Preprocessed.zip ("Ballintoy") was missing the fitted scene-adaptive proxy geometry; this has now been added.
2. The scene "Crescent" in Unpreprocessed.zip contained an incorrect number of frames in the config file, producing a warning during preprocessing.
description: Further relevant documentation may be found in the following resources.

   Bertel, T., Yuan, M., Lindroos, R., and Richardt, C.,  2020.   OmniPhotos: Casual 360° VR Photography.    ACM SIGGRAPH Conference and Exhibition on Computer Graphics and Interactive Techniques in Asia, 39(6).   Available from: https://researchportal.bath.ac.uk/en/publications/omniphotos-casual-360-vr-photography.
DOI: 10.13145/bacdive6065.20240510.9
title: Halomonas kenyensis Boltyanskaya et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6067.20240510.9
title: Halomonas cerina González-Domenech et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00997
title: Dataset for "Continuous Production of Metal Oxide Nanoparticles via Membrane Emulsification−Precipitation"

description: This dataset contains for the manuscript Continuous Production of Metal Oxide Nanoparticles via Membrane Emulsification−Precipitation, including XPS and photocatalytic data.
description: TEM (JEOL-JEM-2100 Plus) was used to characterize the TiO2 NPs. ImageJ was used to perform statistical image analysis of TEM micrographs to calculate average particle size. XRD diffraction patterns were obtained using a Bruker D8-Advance. A Raman spectrometer was used to characterize the samples (InVia, Reinshaw). The droplet size distribution of the emulsions was analysed by DLS with a detection angle of 173° (Zetasizer Nano-ZS, Malvern Instruments). The interfacial tension of the dispersed phase/continuous phase were measured using a goniometer (Dataphysics OCA20) based on the pendant drop method.30 The band gap of the TiO2 NPs was obtained by measuring the reflection spectra using a UV-vis spectrophotometer (Cary 100). X-ray photoelectron spectroscopy (XPS) was performed on a Thermo Fisher Scientific K-alpha+ spectrometer. Samples were analysed using a micro-focused monochromatic Al x-ray source (72 W) over an area of approximately 400 micrometres.  Data was recorded at pass energies of 150 eV for survey scans and 40 eV for high resolution scan with 1 eV and 0.1 eV step sizes respectively. Data analysis was performed in CasaXPS using a Shirley type background and Scofield cross sections, with an energy dependence of -0.6. The specific surface area and pore size distribution were characterized by analysing the N2 adsorption and desorption isotherms obtained at 77 K using a micromeritics 3Flex equipment. 

 The photocatalytic activity (PCA) of TiO2 NPs was investigated using a Peschl Ultraviolet photoreactor (PhotoLAB, B400-700 Basic Batch-L) equipped with either low pressure (novaLIGHT LP30x, 2.7 W emission at 254 nm) or medium pressure (novaLIGHT TQ150 HG, 150 W broad band UV-visible emission spectrum) mercury lamps, both Heraeus Noblelight. Photocatalytic experiments were conducted with 0.1 g (low pressure lamp) and 0.05 g (medium pressure lamp) of TiO2 NPs dispersed in 700 mL (determined by reactor size) ultrapure water (MilliQ), respectively. 10 μM phenol was added as model pollutant. During irradiation the solution was magnetically stirred and maintained at 10 °C. Ten samples at equidistant time intervals were taken for 60 minutes and 120 minutes for low pressure lamp and medium pressure lamp experiments, respectively. HPLC was performed with an Agilent, series 1100 machine with a Poroshell 120 EC-C18, 2.7 μm, 4.5 x 50 mm column. Isocratic conditions used for phenol detection were 15 % acetonitrile and 85 % 5 mM phosphoric acid (pH 2.4), flow rate of 0.5 mL/min and UV detection at 220 nm, at 8 minutes retention time.
DOI: 10.13145/bacdive6069.20240510.9
title: Halomonas caseinilytica Wu et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6070.20240510.9
title: Halomonas lutea Wang et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6071.20240510.9
title: Halomonas alkaliantarctica Poli et al. 2011

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6072.20240510.9
title: Halomonas zhanjiangensis Chen et al. 2009

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6073.20240510.9
title: Halomonas hamiltonii Kim et al. 2010

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6074.20240510.9
title: Halomonas johnsoniae Kim et al. 2010

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6075.20240510.9
title: Halomonas stevensii Kim et al. 2010

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6076.20240510.9
title: Halomonas titanicae Mann et al. 2010

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6078.20240510.9
title: Halomonas caseinilytica Wu et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6079.20240510.9
title: Halomonas qijiaojingensis Chen et al. 2012

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6080.20240510.9
title: Salinicola salarius (Kim et al. 2007) de la Haba et al. 2010

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6081.20240510.9
title: Salinicola socius Anan'ina et al. 2008 emend. de la Haba et al. 2010

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6082.20240510.9
title: Kushneria marisflavi (Yoon et al. 2001) Sánchez-Porro et al. 2009

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6083.20240510.9
title: Kushneria avicenniae (Soto-Ramírez et al. 2007) Sánchez-Porro et al. 2009

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6084.20240510.9
title: Kushneria aurantia Sánchez-Porro et al. 2009

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6085.20240510.9
title: Kushneria sinocarnis Zou and Wang 2010

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6086.20240510.9
title: Aidingimonas halophila Wang et al. 2009

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.9dpth2
title: Occurrence Download

description: A dataset containing 143 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Adelphobates castaneoticus (Caldwell & Myers, 1990)"
 ]
}

 The dataset includes 143 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022880-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive6089.20240510.9
title: Halothiobacillus neapolitanus (Parker 1957) Kelly and Wood 2000 emend. Boden 2017

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.