cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ncsfwf
title: Occurrence Download

description: A dataset containing 643 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "StateProvince is Arizona",
 "TaxonKey is Gambelia wislizenii (Baird & Girard, 1852)"
 ]
}

 The dataset includes 643 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036898-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8cdfm4
title: Occurrence Download

description: A dataset containing 17449 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Icterus parisorum Bonaparte, 1838"
 ]
}

 The dataset includes 17449 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036897-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3881467_d1.v1
title: Additional file 1: Table S1. of Genome sequence of the ectophytic fungus Ramichloridium luteum reveals unique evolutionary adaptations to plant surface niche

description: Genome characteristics of R. luteum. Table S2. Species used in this comparative study. Table S3. The expression of 59 candidate effectors in R. luteum. Green fills represent the up-regulated genes on ectophytic growth. Table S4. Number of carbohydrate-active enzyme modules of R. luteum and 12 other fungi according to the CAZY database. GHs = Glycosyl hydrolases; GTs = Glycosyl transferases; CBMs = Carbohydrate-binding modules; CEs = Carbohydrate esterase; AAs = Auxiliary activities; PLs = Polysaccharide lyases. Table S5. Up-regulated genes involved in PCWDEs of R. luteum on the apple surface. Table S6. Nine secretory lipases show best-hit relationships with the fungi in NCBI nr database. Table S7. Orthologues and putative orthologues in response regulator-dependent osmotic and oxidative stress-response regulatory in R. luteum. Table S8. General features of data got by the high throughput transcriptome analysis. (XLS 72 kb)
DOI: 10.6084/m9.figshare.c.3881467_d1
title: Additional file 1: Table S1. of Genome sequence of the ectophytic fungus Ramichloridium luteum reveals unique evolutionary adaptations to plant surface niche

description: Genome characteristics of R. luteum. Table S2. Species used in this comparative study. Table S3. The expression of 59 candidate effectors in R. luteum. Green fills represent the up-regulated genes on ectophytic growth. Table S4. Number of carbohydrate-active enzyme modules of R. luteum and 12 other fungi according to the CAZY database. GHs = Glycosyl hydrolases; GTs = Glycosyl transferases; CBMs = Carbohydrate-binding modules; CEs = Carbohydrate esterase; AAs = Auxiliary activities; PLs = Polysaccharide lyases. Table S5. Up-regulated genes involved in PCWDEs of R. luteum on the apple surface. Table S6. Nine secretory lipases show best-hit relationships with the fungi in NCBI nr database. Table S7. Orthologues and putative orthologues in response regulator-dependent osmotic and oxidative stress-response regulatory in R. luteum. Table S8. General features of data got by the high throughput transcriptome analysis. (XLS 72 kb)
DOI: 10.6084/m9.figshare.c.3877195_d6
title: Additional file 6: of Developing genome-reduced Pseudomonas chlororaphis strains for the production of secondary metabolites

description: Nutrient added in each well of the Biolog PM5 plate. (XLSX 12Â kb)
DOI: 10.15468/dl.b83u7f
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Atelecyclidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036900-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3877195_d4.v1
title: Additional file 4: of Developing genome-reduced Pseudomonas chlororaphis strains for the production of secondary metabolites

description: Primers used in this study. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3877195_d4
title: Additional file 4: of Developing genome-reduced Pseudomonas chlororaphis strains for the production of secondary metabolites

description: Primers used in this study. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3877195_d3
title: Additional file 3: of Developing genome-reduced Pseudomonas chlororaphis strains for the production of secondary metabolites

description: Deleted genes in each MD region. (XLSX 51Â kb)
DOI: 10.6084/m9.figshare.c.3877195_d1
title: Additional file 1: of Developing genome-reduced Pseudomonas chlororaphis strains for the production of secondary metabolites

description: Predicted essential genes of P. chlororaphis strain. (XLSX 29Â kb)
DOI: 10.6084/m9.figshare.c.3877195_d1.v1
title: Additional file 1: of Developing genome-reduced Pseudomonas chlororaphis strains for the production of secondary metabolites

description: Predicted essential genes of P. chlororaphis strain. (XLSX 29Â kb)
DOI: 10.15468/dl.7w5tpb
title: Occurrence Download

description: A dataset containing 54904 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Icterus spurius (Linnaeus, 1766)"
 ]
}

 The dataset includes 54904 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036899-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pw9sw6
title: Occurrence Download

description: A dataset listing the 4 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atelocynus microtis (Sclater, 1883)"
 ]
}

 The dataset's 4 records were derived from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036889-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7266/4g24pvry
title: Full-scale circulation and migrations flow tests in the wellbore
DOI: 10.6084/m9.figshare.c.3873214_d1.v1
title: Additional file 1: Table S1. of Genome-wide characterization of non-reference transposable element insertion polymorphisms reveals genetic diversity in tropical and temperate maize

description: Information of the 83 maize inbred lines. Table S2. Gene sequences harboring non-redundant transposable elements (NRTEs) in the 83 maize inbred lines. Table S3. Distribution of non-redundant transposable elements (NRTEs) in chromosomal arms and pericentromeric regions across 10 chromosomes. Table S4. Primers used for validation of non-redundant transposable elements (NRTEs). Table S5. Correlation of accumulated transposable element (TE) contents with genomic features in the reference genome. Table S6. Stress- and flowering-related genes and their adjacent non-redundant transposable elements (NRTEs). Table S7. Traits showing significant divergence and directional selection patterns in temperate and tropical maize lines. Table S8. Genome-wide association study of flowering-related traits and non-redundant transposable elements (NRTEs). (XLSX 47Â kb)
DOI: 10.6084/m9.figshare.c.3873214_d1
title: Additional file 1: Table S1. of Genome-wide characterization of non-reference transposable element insertion polymorphisms reveals genetic diversity in tropical and temperate maize

description: Information of the 83 maize inbred lines. Table S2. Gene sequences harboring non-redundant transposable elements (NRTEs) in the 83 maize inbred lines. Table S3. Distribution of non-redundant transposable elements (NRTEs) in chromosomal arms and pericentromeric regions across 10 chromosomes. Table S4. Primers used for validation of non-redundant transposable elements (NRTEs). Table S5. Correlation of accumulated transposable element (TE) contents with genomic features in the reference genome. Table S6. Stress- and flowering-related genes and their adjacent non-redundant transposable elements (NRTEs). Table S7. Traits showing significant divergence and directional selection patterns in temperate and tropical maize lines. Table S8. Genome-wide association study of flowering-related traits and non-redundant transposable elements (NRTEs). (XLSX 47Â kb)
DOI: 10.6084/m9.figshare.c.3873154_d3
title: MOESM3 of Over-expression of BAG-1 in head and neck squamous cell carcinomas (HNSCC) is associated with cisplatin-resistance

description: Additional file 3: Table S2. Gene array analysis of altered gene expression in advanced UMSCC cells. A. RNA and DNA were purified from seven pairs of UMSCC cell lines for gene array analysis and validation of interested genes. B. List of top diseases and bio functions generated by Ingenuity Pathway Analysis software.
DOI: 10.6084/m9.figshare.c.3873154_d3.v1
title: MOESM3 of Over-expression of BAG-1 in head and neck squamous cell carcinomas (HNSCC) is associated with cisplatin-resistance

description: Additional file 3: Table S2. Gene array analysis of altered gene expression in advanced UMSCC cells. A. RNA and DNA were purified from seven pairs of UMSCC cell lines for gene array analysis and validation of interested genes. B. List of top diseases and bio functions generated by Ingenuity Pathway Analysis software.
DOI: 10.6084/m9.figshare.c.3870559_d6
title: Additional file 6: Dataset 3. of Brain ureido degenerative protein modifications are associated with neuroinflammation and proteinopathy in Alzheimerâ  s disease with cerebrovascular disease

description: List of homocitrulline sites identified in the particulate brain proteomes of AD + CVD. (XLS 68Â kb)
DOI: 10.6084/m9.figshare.c.3870559_d6.v1
title: Additional file 6: Dataset 3. of Brain ureido degenerative protein modifications are associated with neuroinflammation and proteinopathy in Alzheimerâ  s disease with cerebrovascular disease

description: List of homocitrulline sites identified in the particulate brain proteomes of AD + CVD. (XLS 68Â kb)
DOI: 10.6084/m9.figshare.c.3870559_d5.v1
title: Additional file 5: Dataset 3. of Brain ureido degenerative protein modifications are associated with neuroinflammation and proteinopathy in Alzheimer’s disease with cerebrovascular disease

description: List of proteins identified in the soluble and particulate brain fractions. (XLS 6489 kb)
DOI: 10.6084/m9.figshare.c.3870559_d5
title: Additional file 5: Dataset 3. of Brain ureido degenerative protein modifications are associated with neuroinflammation and proteinopathy in Alzheimer’s disease with cerebrovascular disease

description: List of proteins identified in the soluble and particulate brain fractions. (XLS 6489 kb)
DOI: 10.6084/m9.figshare.c.3870559_d4
title: Additional file 4: Dataset 2. of Brain ureido degenerative protein modifications are associated with neuroinflammation and proteinopathy in Alzheimerâ  s disease with cerebrovascular disease

description: List of total proteins identified in the particulate brain fraction of AD + CVD by sarcosyl coupled to in-gel digestion. (XLS 1311Â kb)
DOI: 10.6084/m9.figshare.c.3870559_d4.v1
title: Additional file 4: Dataset 2. of Brain ureido degenerative protein modifications are associated with neuroinflammation and proteinopathy in Alzheimerâ  s disease with cerebrovascular disease

description: List of total proteins identified in the particulate brain fraction of AD + CVD by sarcosyl coupled to in-gel digestion. (XLS 1311Â kb)
DOI: 10.6084/m9.figshare.c.3870556_d3
title: Additional file 3: Texts S1 though S2. of Investigating MicroRNA and transcription factor co-regulatory networks in colorectal cancer

description: TextS1. Compiles CRC-related genes from multiple datasets. Text S2. compiles CRC-related miRNAs from multiple datasets. (ZIP 9 kb)
DOI: 10.6084/m9.figshare.c.3870556_d3.v1
title: Additional file 3: Texts S1 though S2. of Investigating MicroRNA and transcription factor co-regulatory networks in colorectal cancer

description: TextS1. Compiles CRC-related genes from multiple datasets. Text S2. compiles CRC-related miRNAs from multiple datasets. (ZIP 9 kb)
DOI: 10.6084/m9.figshare.c.3870559_d2.v1
title: Additional file 2: Dataset 1.1: of Brain ureido degenerative protein modifications are associated with neuroinflammation and proteinopathy in Alzheimerâ  s disease with cerebrovascular disease

description: Total group LC-MS/MS peak intensity of the peptides that contain the citrulline triplet in the BA21 brain proteome. (XLS 176Â kb)
DOI: 10.6084/m9.figshare.c.3870559_d2
title: Additional file 2: Dataset 1.1: of Brain ureido degenerative protein modifications are associated with neuroinflammation and proteinopathy in Alzheimerâ  s disease with cerebrovascular disease

description: Total group LC-MS/MS peak intensity of the peptides that contain the citrulline triplet in the BA21 brain proteome. (XLS 176Â kb)
DOI: 10.15468/dl.kgw3ns
title: Occurrence Download

description: A dataset containing 2074 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Penaeidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2074 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036901-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x8wy76
title: Occurrence Download

description: A dataset containing 102382 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles gambiae Giles, 1900",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 102382 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036894-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3866416_d4
title: Additional file 4: Table S3. of Differential gene expression in Anopheles stephensi following infection with drug-resistant Plasmodium yoelii

description: KEGG analysis of differentially expressed genes: (A) R-As24h vs S-As24h; (B) R-As13d vs S-As13d; (C) R-As19d vs S-As19d. (XLS 34 kb)
DOI: 10.15468/dl.tq5u5c
title: Occurrence Download

description: A dataset containing 2440 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Chimantaea Maguire, Steyerm. & Wurdack, Stenopadus S.F.Blake, Stomatochaeta (S.F.Blake) Maguire & Wurdack, Wunderlichia Riedel ex Benth. & Hook.f.)"
 ]
}

 The dataset includes 2440 records from 142 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036902-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3863086_d1
title: MOESM1 of An efficient unified model for genome-wide association studies and genomic selection

description: Additional file 1. R code of StepLMM. The data contains the R function of StepLMM, an example data and usersâ   guide.
DOI: 10.15468/dl.8nyxqq
title: Occurrence Download

description: A dataset containing 419 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is United States of America",
 "GadmGid is USA.3_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gambelia wislizenii (Baird & Girard, 1852)"
 ]
}

 The dataset includes 419 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036903-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3861754_d4.v1
title: Additional file 4: of Conservation and divergence of small RNA pathways and microRNAs in land plants

description: Conserved miRNAs identified in this study. (TXT 112Â kb)
DOI: 10.6084/m9.figshare.c.3861754_d4
title: Additional file 4: of Conservation and divergence of small RNA pathways and microRNAs in land plants

description: Conserved miRNAs identified in this study. (TXT 112Â kb)
DOI: 10.6084/m9.figshare.c.3861754_d3
title: Additional file 3: of Conservation and divergence of small RNA pathways and microRNAs in land plants

description: Nucleotide sequences of genes identified in this study. (TXT 3511Â kb)
DOI: 10.6084/m9.figshare.c.3861754_d1.v1
title: Additional file 1: of Conservation and divergence of small RNA pathways and microRNAs in land plants

description: Supplemental tables. (XLSX 758Â kb)
DOI: 10.6084/m9.figshare.c.3861754_d1
title: Additional file 1: of Conservation and divergence of small RNA pathways and microRNAs in land plants

description: Supplemental tables. (XLSX 758Â kb)
DOI: 10.6084/m9.figshare.c.3861730_d3
title: Additional file 3: Table S2. of Development of nomograms to predict axillary lymph node status in breast cancer patients

description: Sensitivity analysis of the model performance in population with different sample sizes. We used different populations with different sample size to assess the performance and the robustness of the models. (XLSX 41Â kb)
DOI: 10.6084/m9.figshare.c.3861730_d3.v1
title: Additional file 3: Table S2. of Development of nomograms to predict axillary lymph node status in breast cancer patients

description: Sensitivity analysis of the model performance in population with different sample sizes. We used different populations with different sample size to assess the performance and the robustness of the models. (XLSX 41Â kb)
DOI: 10.15468/dl.dq7dbs
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes vexans (Meigen, 1830)",
 "Year is greater than or equal to 1490",
 "Year is less than or equal to 1900"
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036905-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dcwepx
title: Occurrence Download

description: A dataset containing 1171 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sepiidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1171 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036904-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3860371_d1
title: Additional file 1: of Genetic characterization of novel class 1 Integrons In0, In1069 and In1287 to In1290, and the inference of In1069-associated integron evolution in Enterobacteriaceae

description: Sequence analysis for In0, In1069, In893, and In1287 to In1290, respetively. (ZIP 65 kb)
DOI: 10.6084/m9.figshare.c.3860350_d4
title: MOESM3 of Histone 4 lysine 8 acetylation regulates proliferation and hostâ  pathogen interaction in Plasmodium falciparum

description: Additional file 3: Table S1. Genes differentially expressed in the transfectants (related to Fig.Â 1).
DOI: 10.6084/m9.figshare.c.3860350_d4.v1
title: MOESM3 of Histone 4 lysine 8 acetylation regulates proliferation and hostâ  pathogen interaction in Plasmodium falciparum

description: Additional file 3: Table S1. Genes differentially expressed in the transfectants (related to Fig.Â 1).
DOI: 10.6084/m9.figshare.c.3860335_d6.v1
title: MOESM6 of Piloting a programme tool to evaluate malaria case investigation and reactive case detection activities: results from 3 settings in the Asia Pacific

description: Additional file 6. Module 3 resultsâ  questionnaire responses for the 3 pilot settings.
DOI: 10.6084/m9.figshare.c.3860335_d6
title: MOESM6 of Piloting a programme tool to evaluate malaria case investigation and reactive case detection activities: results from 3 settings in the Asia Pacific

description: Additional file 6. Module 3 resultsâ  questionnaire responses for the 3 pilot settings.
DOI: 10.6084/m9.figshare.c.3860335_d5
title: MOESM5 of Piloting a programme tool to evaluate malaria case investigation and reactive case detection activities: results from 3 settings in the Asia Pacific

description: Additional file 5. Module 4 Estimating the costs Excel template.
DOI: 10.6084/m9.figshare.c.3860335_d5.v1
title: MOESM5 of Piloting a programme tool to evaluate malaria case investigation and reactive case detection activities: results from 3 settings in the Asia Pacific

description: Additional file 5. Module 4 Estimating the costs Excel template.
DOI: 10.6084/m9.figshare.c.3860350_d1
title: MOESM10 of Histone 4 lysine 8 acetylation regulates proliferation and hostâ  pathogen interaction in Plasmodium falciparum

description: Additional file 10. Table S4. MACS identified peaks for H4K8ac ChIP-Seq (related to Fig. 4).
DOI: 10.6084/m9.figshare.c.3860350_d1.v1
title: MOESM10 of Histone 4 lysine 8 acetylation regulates proliferation and hostâ  pathogen interaction in Plasmodium falciparum

description: Additional file 10. Table S4. MACS identified peaks for H4K8ac ChIP-Seq (related to Fig. 4).
DOI: 10.6084/m9.figshare.c.3860335_d4.v1
title: MOESM4 of Piloting a programme tool to evaluate malaria case investigation and reactive case detection activities: results from 3 settings in the Asia Pacific

description: Additional file 4. Module 3 Evaluating standard operating procedures Excel template.
DOI: 10.6084/m9.figshare.c.3860335_d4
title: MOESM4 of Piloting a programme tool to evaluate malaria case investigation and reactive case detection activities: results from 3 settings in the Asia Pacific

description: Additional file 4. Module 3 Evaluating standard operating procedures Excel template.
DOI: 10.6084/m9.figshare.c.3855664_d2.v1
title: Additional file 2: of Comparative studies on tolerance of rice genotypes differing in their tolerance to moderate salt stress

description: Table S1. Primers used in real-time PCR to verify the expression pattern of differentially expressed genes. Table S2. Differentially expressed genes up-regulated only in Dongdao-4 under salt stress. Table S3. Differentially expressed genes up-regulated only in Jigeng-88 under salt stress. Table S4. Differentially expressed genes up-regulated in both Dongdao-4 and Jigeng-88 by salt stress. Table S5. Differentially expressed genes down-regulated only in Dongdao-4 under salt stress. Table S6. Differentially expressed genes down-regulated only in Jigeng-88 under salt stress. Table S7. Differentially expressed genes down-regulated in both Dongdao-4 and Jigeng-88 by salt stress. Table S8. List of all the differentially expressed genes in Dongdao-4 by salt stress. Table S9. List of all the differentially expressed genes in Jigeng-88 by salt stress. Table S10. Promoter analysis of specifically up-regulated genes in Dongdao-4 by PLantCARE ( http://bioinformatics.psb.ugent.be/webtools/plantcare/html/ ). (XLSX 219Â kb)
DOI: 10.6084/m9.figshare.c.3854254_d10
title: MOESM9 of Protein signatures of molecular pathways in non-small cell lung carcinoma (NSCLC): comparison of glycoproteomics and global proteomics

description: Additional file 9. Â Identified glycoproteins from ADC and SqCC cancer tissues.