cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.831657
title: Sponge bioerosion accelerated by ocean acidification across species and latitudes?

description: In many marine biogeographic realms, bioeroding sponges dominate the internal bioerosion of calcareous substrates such as mollusc beds and coral reef framework. They biochemically dissolve part of the carbonate and liberate so-called sponge chips, a process that is expected to be facilitated and accelerated in a more acidic environment inherent to the present global change. The bioerosion capacity of the demosponge Cliona celata Grant, 1826 in subfossil oyster shells was assessed via alkalinity anomaly technique based on 4 days of experimental exposure to three different levels of carbon dioxide partial pressure (pCO2) at ambient temperature in the cold-temperate waters of Helgoland Island, North Sea. The rate of chemical bioerosion at present-day pCO2 was quantified with 0.08-0.1 kg/m**2/year. Chemical bioerosion was positively correlated with increasing pCO2, with rates more than doubling at carbon dioxide levels predicted for the end of the twenty-first century, clearly confirming that C. celata bioerosion can be expected to be enhanced with progressing ocean acidification (OA). Together with previously published experimental evidence, the present results suggest that OA accelerates sponge bioerosion (1) across latitudes and biogeographic areas, (2) independent of sponge growth form, and (3) for species with or without photosymbionts alike. A general increase in sponge bioerosion with advancing OA can be expected to have a significant impact on global carbonate (re)cycling and may result in widespread negative effects, e.g. on the stability of wild and farmed shellfish populations, as well as calcareous framework builders in tropical and cold-water coral reef ecosystems.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2014-04-04.
description: Supplement to: Wisshak, Max; Schönberg, Christine H L; Form, Armin; Freiwald, André (2014): Sponge bioerosion accelerated by ocean acidification across species and latitudes? Helgoland Marine Research, 68(2), 253-262
DOI: 10.1594/pangaea.839297
title: Vertical profiles of environmental parameters measured on discrete water samples collected with Niskin bottles at station TARA_189 during the Tara Oceans expedition 2009-2013

description: The Tara Oceans Expedition (2009-2013) was a global survey of ocean ecosystems aboard the Sailing Vessel Tara. It carried out extensive measurements of evironmental conditions and collected plankton (viruses, bacteria, protists and metazoans) for later analysis using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set includes properties of seawater, particulate matter and dissolved matter that were measured from discrete water samples collected with Niskin bottles during the 2009-2013 Tara Oceans expedition. Properties include pigment concentrations from HPLC analysis (10 depths per vertical profile, 25 pigments per depth), the carbonate system (Surface and 400m; pH (total scale), CO2, pCO2, fCO2, HCO3, CO3, Total alkalinity, Total carbon, OmegaAragonite, OmegaCalcite, and dosage Flags), nutrients (10 depths per vertical profile; NO2, PO4, N02/NO3, SI, quality Flags), DOC, CDOM, and dissolved oxygen isotopes. The Service National d'Analyse des Paramètres Océaniques du CO2, at the Université Pierre et Marie Curie, determined CT and AT potentiometrically. More than 200 vertical profiles of these properties were made across the world ocean. DOC, CDOM and dissolved oxygen isotopes are available only for the Arctic Ocean and Arctic Seas (2013).
description: marc.picheral@obs-vlfr.fr&gt;2014-10-03T13:23:32&gt;D:\process_ctd_data\Tara_validated_CTD_data_20121011\Tara_Oceans_Data_RVSS-NISKIN_2009-2013_20141003&gt;
DOI: 10.1594/pangaea.839338
title: Vertical profiles of environmental parameters measured on discrete water samples collected with Niskin bottles at station TARA_206 during the Tara Oceans expedition 2009-2013

description: The Tara Oceans Expedition (2009-2013) was a global survey of ocean ecosystems aboard the Sailing Vessel Tara. It carried out extensive measurements of evironmental conditions and collected plankton (viruses, bacteria, protists and metazoans) for later analysis using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set includes properties of seawater, particulate matter and dissolved matter that were measured from discrete water samples collected with Niskin bottles during the 2009-2013 Tara Oceans expedition. Properties include pigment concentrations from HPLC analysis (10 depths per vertical profile, 25 pigments per depth), the carbonate system (Surface and 400m; pH (total scale), CO2, pCO2, fCO2, HCO3, CO3, Total alkalinity, Total carbon, OmegaAragonite, OmegaCalcite, and dosage Flags), nutrients (10 depths per vertical profile; NO2, PO4, N02/NO3, SI, quality Flags), DOC, CDOM, and dissolved oxygen isotopes. The Service National d'Analyse des Paramètres Océaniques du CO2, at the Université Pierre et Marie Curie, determined CT and AT potentiometrically. More than 200 vertical profiles of these properties were made across the world ocean. DOC, CDOM and dissolved oxygen isotopes are available only for the Arctic Ocean and Arctic Seas (2013).
description: marc.picheral@obs-vlfr.fr&gt;2014-10-03T13:23:32&gt;D:\process_ctd_data\Tara_validated_CTD_data_20121011\Tara_Oceans_Data_RVSS-NISKIN_2009-2013_20141003&gt;
DOI: 10.1594/pangaea.925185
title: Thalassiosira rotula culture experiments for the assessment of phytoplankton stable carbon isotopic composition as a tool to monitor anthropogenic CO2 submarine leakages

description: Three culture experiment on the diatom Thalassiosira rotula were conducted within two 2L-photobioreactors under controlled conditions of light and temperature (20 ± 0.02 °C). During each experiment, diatoms were simultaneously grown in the two bioreactors filled respectively with different media. In one of the two bioreactor microalgae were grown in a natural seawater (NAT) medium, whereas in the second one an artificial seawater medium (ASW) was used. ASW medium was artificially prepared, to reach a modified isotopic composition of DIC using an industrial compressed CO2, and at each experiment a different initial DIC concentration was tested to verify if carbon availability would affect phytoplankton algal metabolism. For NAT medium, a sterile-filtered Adriatic Sea water was used and a natural DIC concentration used. During the experiments, the evolution of T. rotula abundance was investigated, together with the variation of the isotopic composition of dissolved inorganic carbon, phytoplankton organic carbon (as particulate organic carbon) and prokaryotes organic carbon (as the fraction &lt; 10 µm of particulate organic carbon). Carbonate system parameters (in situ pHNBS, total alkalinity, DIC and dissolved CO2 concentration), nutrient (dissolved inorganic nitrogen and phosphate) concentration and prokaryotes abundance were also analysed during diatom cultivation.
DOI: 10.1594/pangaea.929283
title: Seawater carbonate chemistry and biomass and pteropod metabolism

description: Pteropods (pelagic snails) are abundant zooplankton in the Southern Ocean where they are important grazers of phytoplankton, prey for higher trophic levels, and sensitive to environmental change. The Western Antarctic Peninsula (WAP) is a highly dynamic and productive region that has undergone rapid warming, but little is known about how environmental changes there will affect pteropod physiology. In this study, the effects of warming seawater temperatures and shifting food availability on Limacina helicina antarctica metabolism (respiration and excretion) were determined by conducting shipboard experiments that exposed pteropods to a range of temperatures and phytoplankton (food) concentrations. Highest respiration (up to 69 μmol O2/gDW/h) and usually highest excretion rates occurred under higher temperature with more limited metabolic response to food concentration, indicating these factors do not always have an additive effect on pteropod metabolism. The proportion of dissolved organic matter (DOM) to total organic and inorganic dissolved constituents was high and was also significantly affected by shifts in temperature and food. Dissolved organic carbon, nitrogen, and phosphorus (DOC, DON, and DOP) were on average 27, 51, and 11.5% of the total C, N, and P metabolized, respectively. The proportion of total N excreted as DON and the proportion of total P excreted as DOP were significantly affected by a combination of shifting temperature and food concentrations. There were no effects of temperature or food on DOC excretion (mean 8.79 μmol C/gDW/h; range 0.44 to 44) as a proportion of total C metabolized. Metabolic O2:N ratio ranged from 2 to 9 and decreased significantly with increasing temperature and food, indicating a shift toward increased protein catabolism. Metabolic ratios of C, N, and P were all below the canonical Redfield ratio, which has implications for phytoplankton nutrient uptake and bacterial production. Respiration rates at ambient conditions of other WAP pteropods, and excretion rates for Clio pyramidata, were also measured, with respiration rates ranging from 24.39 (Spongiobranchaea australis) to 28.86 (L. h. antarctica) μmol O2/gDW/h. Finally, a CO2 perturbation experiment measuring L. h. antarctica metabolism under pre-industrial and elevated dissolved pCO2 conditions showed no significant change in mean L. h. antarctica respiration or excretion rates with higher pCO2. These insights into the metabolic response of pteropods to ocean variability increase our understanding of the role of zooplankton in biogeochemical cycles and help predict future responses to climate change.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-03-15.
DOI: 10.1594/pangaea.929013
title: Seawater carbonate chemistry and coral offspring ecological performance

description: The persistence of reef building corals is threatened by human-induced environmental change. Maintaining coral reefs into the future requires not only the survival of adults, but also the influx of recruits to promote genetic diversity and retain cover following adult mortality. Few studies examine the linkages among multiple life stages of corals, despite a growing knowledge of carryover effects in other systems. We provide a novel test of coral parental conditioning to ocean acidification (OA) and tracking of offspring for 6 months post-release to better understand parental or developmental priming impacts on the processes of offspring recruitment and growth. Coral planulation was tracked for 3 months following adult exposure to high pCO2 and offspring from the second month were reciprocally exposed to ambient and high pCO2 for an additional 6 months. Offspring of parents exposed to high pCO2 had greater settlement and survivorship immediately following release, retained survivorship benefits during 1 and 6 months of continued exposure, and further displayed growth benefits to at least 1 month post release. Enhanced performance of offspring from parents exposed to high conditions was maintained despite the survivorship in both treatments declining in continued exposure to OA. Conditioning of the adults while they brood their larvae, or developmental acclimation of the larvae inside the adult polyps, may provide a form of hormetic conditioning, or environmental priming that elicits stimulatory effects. Defining mechanisms of positive acclimatization, with potential implications for carry over effects, cross-generational plasticity, and multi-generational plasticity, is critical to better understanding ecological and evolutionary dynamics of corals under regimes of increasing environmental disturbance. Considering environmentally-induced parental or developmental legacies in ecological and evolutionary projections may better account for coral reef response to the chronic stress regimes characteristic of climate change.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-03-09.
DOI: 10.1594/pangaea.955703
title: Seawater carbonate chemistry and effects of ocean acidification and wariming on life-history traits of the Pacific oyster Crassostrea gigas

description: Ocean acidification and warming (OAW) are pressing contemporary issues affecting marine life and specifically calcifying organisms. Here, we investigated the direct effects of OAW on life-history traits of the Pacific oyster Crassostrea gigas, the most cultivated bivalve species worldwide. We also tested whether parental conditioning history shaped the phenotypic characters of their progenies (intergenerational carryover effects). Adult oysters and their offspring were exposed to two temperatures (18°C, +3°C) under ambient pH conditions or under an end-of-century acidification scenario (−0.33 pH unit). In adults, we monitored standard biometric and reproductive parameters, stress response by quantifying neuroendocrine metabolites and gamete quality. In larvae, we measured hatching rate, size, biochemical quality, and behavior. We found that reducing pH reduced growth rate and activated the serotonin system, but increasing temperature attenuated these effects. There was no effect of pH on reproduction at either temperature, and no intergenerational carryover effects. Larval characteristics were similar between treatments, regardless of parental conditioning history. Thus, the Pacific oyster seems robust to changes in pH, and increasing temperature is not an aggravating factor. We emphasize that the use of neuroendocrine indicators holds promise for revealing sublethal impacts of environmental changes.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-02-10.For the treatment, C=control (C), OA=acidified, W=warm, and OAW=acidified and warm
DOI: 10.1594/pangaea.887583
title: Seawater carbonate chemistry and boron isotope and trace elements incorporation in aposymbiotic Acropora millepora coral

description: Early-life stages of reef-building corals are vital to coral existence and reef maintenance. It is therefore crucial to study juvenile coral response to future climate change pressures. Moreover, corals are known to be reliable recorders of environmental conditions in their skeletal materials. Aposymbiotic Acropora millepora larvae were cultured in different seawater temperature (27 and 29ºC) and pCO2 (390 and 750 µatm) conditions to understand the impacts of 'end of century' ocean acidification (OA) and ocean warming (OW) conditions on skeletal morphology and geochemistry. The experimental conditions impacted primary polyp juvenile coral skeletal morphology and growth resulting in asymmetric translucent appearances with brittle skeleton features. The impact of OA resulted in microstructure differences with decreased precipitation or lengthening of fasciculi and disorganized aragonite crystals that led to more concentrations of centers of calcifications. The coral skeletal delta 11B composition measured by laser ablation MC-ICP-MS was significantly affected by pCO2 (p = 0.0024) and water temperature (p = 1.46 x 10-5). Reconstructed pH of the primary polyp skeleton using the ?11B proxy suggests a difference in coral calcification site and seawater pH consistent with previously observed coral pH up-regulation. Similarly, trace element results measured by laser ablation ICP-MS indicate the impact of pCO2. Primary polyp juvenile Sr/Ca ratio indicates a bias in reconstructed sea surface temperature (SST) under higher pCO2 conditions. Coral microstructure content changes (center of calcification and fasciculi) due to OA possibly contributed to the variability in B/Ca ratios. Our results imply that increasing OA and OW may lead to coral acclimation issues and species-specific inaccuracies of the commonly used Sr/Ca-SST proxy.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-03-22.
description: Supplement to: Wu, Henry C; Dissard, Delphine; Le Cornec, Florence; Thil, François; Tribollet, Aline; Moya, Aurélie; Douville, Eric (2017): Primary Life Stage Boron Isotope and Trace Elements Incorporation in Aposymbiotic Acropora millepora Coral under Ocean Acidification and Warming. Frontiers in Marine Science, 4
DOI: 10.1594/pangaea.955727
title: Seawater carbonate chemistry and hatch size and larval growth of walleye pollock (Theragra chalcogramma)

description: Rising atmospheric concentrations of CO2 are predicted to decrease the pH of high-latitude oceans by 0.3–0.5 units by 2100. Because of their limited capacity for ion exchange, embryos and larvae of marine fishes are predicted to be more sensitive to elevated CO2 than juveniles and adults. Eggs and larvae of walleye pollock (Theragra chalcogramma) were incubated across a broad range of CO2 levels (280–2100 µatm) to evaluate sensitivity in this critical resource species. Slightly elevated CO2 levels (450 µatm) resulted in earlier hatching times, but differences among egg batches were greater than those observed across CO2 treatments. Egg batches differed significantly in size-at-hatch metrics, but we observed no consistent effect of CO2 level. In three independent experiments, walleye pollock were reared at ambient and elevated CO2 levels through the early larval stage (to 30 days post-hatch). Across trials, there were only minor effects of CO2 level on size and growth rate, but fish in the ambient treatments tended to be slightly smaller than fish reared at elevated CO2 levels. These results suggest that growth potential of early life stages of walleye pollock is resilient with respect to the direct physiological effects of ocean acidification.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-02-10.
DOI: 10.1594/pangaea.971301
title: Seawater carbonate chemistry and bioenergetics and disease susceptibility in Pacific herring Clupea pallasii

description: Pacific herring Clupea pallasii were reared from hatch under 3 CO2 partial pressure (pCO2) treatments (ambient, ~650 μatm; intermediate, ~1500 μatm; high, ~3000 μatm) through metamorphosis (98 d) to evaluate the effects of ocean acidification on bioenergetics and susceptibility to an endemic viral disease.This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Zenodo (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-07-19.
DOI: 10.1594/pangaea.914668
title: Seawater carbonate chemistry and mortality, morphology, feeding rate, metabolic rate and activity of two keystone marine invertebrates

description: Ocean warming (OW) and acidification (OA) are key features of global change and are predicted to have negative consequences for marine species and ecosystems. At a smaller scale increasing oil and gas activities at northern high latitudes could lead to greater risk of petroleum pollution, potentially exacerbating the effects of such global stressors. However, knowledge of combined effects is limited. This study employed a scenario-based, collapsed design to investigate the impact of one local acute stressor (North Sea crude oil) and two chronic global drivers (pH for OA and temperature for OW), alone or in combination on aspects of the biology of larval stages of two key invertebrates: the northern shrimp (Pandalus borealis) and the green sea urchin (Strongylocentrotus droebachiensis). Both local and global drivers had negative effects on survival, development and growth of the larval stages. These effects were species- and stage-dependent. No statistical interactions were observed between local and global drivers and the combined effects of the two drivers were approximately equal to the sum of their separate effects. This study highlights the importance of adjusting regulation associated with oil spill prevention to maximize the resilience of marine organisms to predicted future global conditions.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-04-02.