cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26384353
title: Figure 9: Bacterial burdens of <i>P. aeruginosa</i> Xen41-infected mice following treatment with peptoid or antibiotics

description: CFUs taken from sacrifice of day 1 mice. (A) CFUs/ml of Xen41 in the lungs of mice from varying treatment groups. (B) CFUs/ml of Xen41 in the spleen of mice from varying treatment groups. For all graphs, p-values are compared to the average of untreated mice. The line across represents the average of all data points within the group.
DOI: 10.6084/m9.figshare.26384353.v1
title: Figure 9: Bacterial burdens of <i>P. aeruginosa</i> Xen41-infected mice following treatment with peptoid or antibiotics

description: CFUs taken from sacrifice of day 1 mice. (A) CFUs/ml of Xen41 in the lungs of mice from varying treatment groups. (B) CFUs/ml of Xen41 in the spleen of mice from varying treatment groups. For all graphs, p-values are compared to the average of untreated mice. The line across represents the average of all data points within the group.
DOI: 10.6084/m9.figshare.26384356
title: Figure 10: IVIS imaging of treated and untreated mice at 24 hours post-infection

description: Images were collected using the same scale of radiance for all mice tested. Each group of mice initially sacrificed were imaged together. An additional mouse in the TM6 group was imaged later using the same scale of radiance as it met the euthanization criteria.
DOI: 10.6084/m9.figshare.26384356.v1
title: Figure 10: IVIS imaging of treated and untreated mice at 24 hours post-infection

description: Images were collected using the same scale of radiance for all mice tested. Each group of mice initially sacrificed were imaged together. An additional mouse in the TM6 group was imaged later using the same scale of radiance as it met the euthanization criteria.
DOI: 10.15468/dl.hsg9hr
title: Occurrence Download

description: A dataset containing 18411 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Occurrence evidence)",
 "GadmGid is MEX",
 "TaxonKey is Setophaga pitiayumi (Vieillot, 1817)"
 ]
}

 The dataset includes 18411 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038445-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26384359
title: Figure 11: Histological analysis of treated and untreated mice

description: Breakdown of histology scoring as (A) averages of groups with standard error for each category and (B) individual scoring across several categories for each mouse sacrificed at day 1. (C) Neutrophil counts per mm<sup>2</sup> for histology sections with standard error via computational analysis.
DOI: 10.6084/m9.figshare.26384359.v1
title: Figure 11: Histological analysis of treated and untreated mice

description: Breakdown of histology scoring as (A) averages of groups with standard error for each category and (B) individual scoring across several categories for each mouse sacrificed at day 1. (C) Neutrophil counts per mm<sup>2</sup> for histology sections with standard error via computational analysis.
DOI: 10.6084/m9.figshare.26384365
title: Figure 12: Histology sectioning of lungs for representative mice in each treatment group

description: Histology of H&E-stained tissue sections of lungs for representative mice in each group. Insets are increased magnification of the box seen in the larger image. The short bar, in the inset, is equivalent to 50 μm and the longer bar is equivalent to 500 μm.
DOI: 10.6084/m9.figshare.26384365.v1
title: Figure 12: Histology sectioning of lungs for representative mice in each treatment group

description: Histology of H&E-stained tissue sections of lungs for representative mice in each group. Insets are increased magnification of the box seen in the larger image. The short bar, in the inset, is equivalent to 50 μm and the longer bar is equivalent to 500 μm.
DOI: 10.6084/m9.figshare.26384368
title: Figure S1: Time-kill experiments of Peptoids TM1 and TM6

description: Time course experiments for 2-fold dilutions of TM1 (A) and TM6 (B) mixed with <i>P. aeruginosa </i>Xen41 were measured for luminescence at the following time points: 0, 5, 10, 15, 20, 30, 45, 60, 90, and 120 minutes. In addition to 2-fold dilutions, a control with PBS was also measured.
DOI: 10.6084/m9.figshare.26384368.v1
title: Figure S1: Time-kill experiments of Peptoids TM1 and TM6

description: Time course experiments for 2-fold dilutions of TM1 (A) and TM6 (B) mixed with <i>P. aeruginosa </i>Xen41 were measured for luminescence at the following time points: 0, 5, 10, 15, 20, 30, 45, 60, 90, and 120 minutes. In addition to 2-fold dilutions, a control with PBS was also measured.
DOI: 10.6084/m9.figshare.26384371
title: Figure S2: Time-kill experiments for frontline antibiotics

description: Ceftazidime (A), kanamycin (B), and meropenem (C) treatment courses of <i>P. aeruginosa </i>Xen41 were measured for luminescence at the following time points: 0, 5, 10, 15, 20, 30, 45, 60, 90, and 120 minutes (<i>n = </i>4 replicates). In addition to 2-fold dilutions of each antibiotic, a control with PBS was also measured.
DOI: 10.6084/m9.figshare.26384371.v1
title: Figure S2: Time-kill experiments for frontline antibiotics

description: Ceftazidime (A), kanamycin (B), and meropenem (C) treatment courses of <i>P. aeruginosa </i>Xen41 were measured for luminescence at the following time points: 0, 5, 10, 15, 20, 30, 45, 60, 90, and 120 minutes (<i>n = </i>4 replicates). In addition to 2-fold dilutions of each antibiotic, a control with PBS was also measured.
DOI: 10.6084/m9.figshare.26384374
title: Figure S3: Bactericidal activity of Peptoids TM1, TM5, and TM6 against multidrug resistance clinical isolates of <i>Pseudomonas aeruginosa</i>

description: Relative CFUs/ml following peptoids treatment of the <i>P. aeruginosa </i>clinical isolates (A) PALF05, (B) PA2-22, (C) PA2-67, (D) PA3-9, (E) PA3-17, and (F) PA3-45 from Kang et al. All tested conditions were done in triplicate, with error shown as standard deviation.
DOI: 10.6084/m9.figshare.26384374.v1
title: Figure S3: Bactericidal activity of Peptoids TM1, TM5, and TM6 against multidrug resistance clinical isolates of <i>Pseudomonas aeruginosa</i>

description: Relative CFUs/ml following peptoids treatment of the <i>P. aeruginosa </i>clinical isolates (A) PALF05, (B) PA2-22, (C) PA2-67, (D) PA3-9, (E) PA3-17, and (F) PA3-45 from Kang et al. All tested conditions were done in triplicate, with error shown as standard deviation.
DOI: 10.6084/m9.figshare.26384380
title: Figure S5: Live imaging of <i>in vivo</i> treatment of <i>P. aeruginosa</i> Xen41 infections with TM5

description: (A) IVIS <i>in vivo</i> imaging of TM5 treated (left) and untreated control (right) Balb/c mice 6 hours post-infection with 10<sup>7</sup> CFU of <i>P. aeruginosa X</i>en41 via an intratracheal route (<i>n</i> = 8 mice). (B) Relative luminescence of animals at 6 hours post-infection (p= 0.0167) (C) <i>in vivo </i>imaging of surviving animals at 24h post-infection
DOI: 10.6084/m9.figshare.26384380.v1
title: Figure S5: Live imaging of <i>in vivo</i> treatment of <i>P. aeruginosa</i> Xen41 infections with TM5

description: (A) IVIS <i>in vivo</i> imaging of TM5 treated (left) and untreated control (right) Balb/c mice 6 hours post-infection with 10<sup>7</sup> CFU of <i>P. aeruginosa X</i>en41 via an intratracheal route (<i>n</i> = 8 mice). (B) Relative luminescence of animals at 6 hours post-infection (p= 0.0167) (C) <i>in vivo </i>imaging of surviving animals at 24h post-infection
DOI: 10.6084/m9.figshare.26384386
title: Table 1

description: MICs and MBCs of peptoids against <i>P. aeruginosa</i> Xen41
DOI: 10.6084/m9.figshare.26384386.v1
title: Table 1

description: MICs and MBCs of peptoids against <i>P. aeruginosa</i> Xen41
DOI: 10.15468/dl.zy6szk
title: Occurrence Download

description: A dataset containing 287133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-87.04387 20.2633,-86.71643 20.2633,-86.71643 20.57647,-87.04387 20.57647,-87.04387 20.2633))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 287133 records from 268 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038430-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26384389.v1
title: Table 2

description: MICs and MBCs of traditional antibiotics against <i>P. aeruginosa</i> Xen41
DOI: 10.6084/m9.figshare.26384389
title: Table 2

description: MICs and MBCs of traditional antibiotics against <i>P. aeruginosa</i> Xen41
DOI: 10.6084/m9.figshare.26384392
title: Table 3

description: MICs of TM5 and traditional antibiotics against clinical strains of <i>P. aeruginosa</i>.
DOI: 10.6084/m9.figshare.26384395
title: Table S1: Modified Karnofsky Scoring of <i>in vivo</i> peptoid cytotoxicity

description: Animals were scored on a scale of 0-16 for their physical and behavioral responses to peptoid treatment following intratracheal inoculation.
DOI: 10.15468/dl.b79h3d
title: Occurrence Download

description: A dataset containing 3336 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Salvia mexicana L."
 ]
}

 The dataset includes 3336 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038448-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yj2w6m
title: Occurrence Download

description: A dataset listing the 10 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Occurrence evidence, Specimen, Material citation)",
 "Geometry POLYGON((-120.05175 10.14643,-82.32955 10.14643,-82.32955 34.77725,-120.05175 34.77725,-120.05175 10.14643))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Passerella unalaschcensis (J.F.Gmelin, 1789)"
 ]
}

 The dataset's 10 records were derived from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038441-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xbvd9g
title: Occurrence Download

description: A dataset containing 9105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ateles É.Geoffroy Saint-Hilaire, 1806"
 ]
}

 The dataset includes 9105 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038449-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jvjpjv
title: Occurrence Download

description: A dataset containing 1044039 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Belgium, Germany, Netherlands)",
 "TaxonKey is one of (Ondatra zibethicus (Linnaeus, 1766), Myocastor coypus (Molina, 1782))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1044039 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038414-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jx8tw8
title: Occurrence Download

description: A dataset containing 4837 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Swietenia macrophylla G.King"
 ]
}

 The dataset includes 4837 records from 283 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038454-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kbxrqd
title: Occurrence Download

description: A dataset containing 3336 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Salvia mexicana L."
 ]
}

 The dataset includes 3336 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038452-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.48bkup
title: Occurrence Download

description: A dataset containing 2597 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Base de datos de la flora de la Reserva de la Biosfera Chamela-Cuixmala, Jalisco, México"
 ]
}

 The dataset includes 2597 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038455-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nb723e
title: Occurrence Download

description: A dataset containing 5029 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (United States of America, Canada)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pseudotsuga menziesii var. glauca (Beissn.) Franco"
 ]
}

 The dataset includes 5029 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038456-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jv943s
title: Occurrence Download

description: A dataset listing the 14 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Occurrence evidence)",
 "GadmGid is MEX",
 "TaxonKey is Setophaga pitiayumi (Vieillot, 1817)"
 ]
}

 The dataset's 14 records were derived from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038446-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12790948
title: Gravitational lensing: towards combining the multi-messengers (data sharing)

description: # Gravitational lensing: towards combining the multi-messengers (data sharing)


This repository contains the data and code to plot Fig. 1 and Fig. 4 from the article titled - "Gravitational lensing : towards combining the multi messengers". The two folders included here are described below.


## 1. delta-psi


- This folder contains the data and code to plot Fig. 1 in the paper.

- To generate plot for Fig. 1, run python plot_fig1.py

- It computes the y-axis ($\delta \Delta \psi$ : uncertainty in the determination of the relative Fermat potential) for each combination of image pairs (x-axis), for 3 mock lenses, for each of the 4 configuration which are stored in "PLpert_fig_data"


## 2. grb-gw-lensing


- This folder contains the data and code to plot Fig. 4 in the paper.

- data-gererator.ipynb generates the data for the plot. This data is stored in "ler_data" folder. Parameters for the GRB-GW lensing system are stored there.

- grb-gw-lensing-plot.ipynb generates the plot for Fig. 4 (stored as 'combined-final.png'). It uses the data generated by data-gererator.ipynb. This plot shows, i) detectable lensed GRBs and the associated detectable lensed GW events, and ii) detectable lensed GW events and their

associated detectable lensed GRBs.
DOI: 10.5281/zenodo.12790949
title: Gravitational lensing: towards combining the multi-messengers (data sharing)

description: # Gravitational lensing: towards combining the multi-messengers (data sharing)


This repository contains the data and code to plot Fig. 1 and Fig. 4 from the article titled - "Gravitational lensing : towards combining the multi messengers". The two folders included here are described below.


## 1. delta-psi


- This folder contains the data and code to plot Fig. 1 in the paper.

- To generate plot for Fig. 1, run python plot_fig1.py

- It computes the y-axis ($\delta \Delta \psi$ : uncertainty in the determination of the relative Fermat potential) for each combination of image pairs (x-axis), for 3 mock lenses, for each of the 4 configuration which are stored in "PLpert_fig_data"


## 2. grb-gw-lensing


- This folder contains the data and code to plot Fig. 4 in the paper.

- data-gererator.ipynb generates the data for the plot. This data is stored in "ler_data" folder. Parameters for the GRB-GW lensing system are stored there.

- grb-gw-lensing-plot.ipynb generates the plot for Fig. 4 (stored as 'combined-final.png'). It uses the data generated by data-gererator.ipynb. This plot shows, i) detectable lensed GRBs and the associated detectable lensed GW events, and ii) detectable lensed GW events and their

associated detectable lensed GRBs.
DOI: 10.5281/zenodo.13021230
title: Gravitational lensing: towards combining the multi-messengers (data sharing)

description: # Gravitational lensing: towards combining the multi-messengers (data sharing)


This repository contains the data and code to plot Fig. 1 and Fig. 4 from the article titled - "Gravitational lensing : towards combining the multi messengers". The two folders included here are described below.


## 1. delta-psi


- This folder contains the data and code to plot Fig. 1 in the paper.

- To generate plot for Fig. 1, run python plot_fig1.py

- It computes the y-axis ($\delta \Delta \psi$ : uncertainty in the determination of the relative Fermat potential) for each combination of image pairs (x-axis), for 3 mock lenses, for each of the 4 configuration which are stored in "PLpert_fig_data"


## 2. grb-gw-lensing


- This folder contains the data and code to plot Fig. 4 in the paper.

- data-gererator.ipynb generates the data for the plot. This data is stored in "ler_data" folder. Parameters for the GRB-GW lensing system are stored there.

- grb-gw-lensing-plot.ipynb generates the plot for Fig. 4 (stored as 'combined-final.png'). It uses the data generated by data-gererator.ipynb. This plot shows, i) detectable lensed GRBs and the associated detectable lensed GW events, and ii) detectable lensed GW events and their

associated detectable lensed GRBs.
DOI: 10.15468/dl.qdbd5y
title: Occurrence Download

description: A dataset containing 184966 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "TaxonKey is one of (Aponogeton distachyos L.f., Arthurdendyus triangulatus (Dendy, 1895), Cabomba caroliniana A.Gray, Callosciurus finlaysonii (Horsfield, 1823), Cherax destructor Clark, 1936, Corvus splendens Vieillot, 1817, Crassula helmsii (Kirk) Cockayne, Elodea densa (Planch.) Casp., Eriocheir sinensis H.Milne Edwards, 1853, Erythranthe guttata (DC.) G.L.Nesom, Faxonius immunis (Hagen, 1870), Faxonius juvenilis (Hagen, 1870), Faxonius rusticus (Girard, 1852), Faxonius virilis (Hagen, 1870), Gambusia affinis (Baird & Girard, 1853), Heracleum mantegazzianum Sommier & Levier, Heracleum persicum Desf. ex Fisch., C.A.Mey. & Avé-Lall., Heracleum pubescens (Hoffm.) M.Bieb., Houttuynia cordata Thunb., Hydrocotyle ranunculoides L.f., Impatiens glandulifera Royle, Koenigia polystachya (Wall. ex Meisn.) T.M.Schust. & Reveal, Lagarosiphon major (Ridl.) Moss, Lepomis gibbosus (Linnaeus, 1758), Limnoperna fortunei (Dunker, 1857), Ludwigia grandiflora (Michx.) Greuter & Burdet, Ludwigia peploides (Kunth) P.H.Raven, Lysichiton americanus Hultén & H.St.John, Morone americana (Gmelin, 1789), Muntiacus reevesi (Ogilby, 1839), Myriophyllum aquaticum (Vell.) Verdc., Myriophyllum heterophyllum Michx., Pacifastacus leniusculus (Dana, 1852), Petasites japonicus (Siebold & Zucc.) Maxim., Pontederia cordata L., Procambarus acutus (Girard, 1852), Procambarus clarkii (Girard, 1852), Procambarus virginalis Lyko, 2017, Pseudorasbora parva (Temminck & Schlegel, 1846), Pycnonotus cafer (Linnaeus, 1766), Saururus cernuus L., Sciurus carolinensis Gmelin, 1788, Sciurus niger Linnaeus, 1758, Solenopsis invicta Buren, 1972, Solenopsis richteri Forel, 1909, Threskiornis aethiopicus (Latham, 1790), Vespa velutina Lepeletier, 1836, Zizania latifolia (Griseb.) Hance ex F.Muell.)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 184966 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038415-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ymt573
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gomphonema laticollum E.Reichardt, 2001",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.5395 -28.5786,20.509 -28.5786,20.509 -32.9007,25.5395 -32.9007,25.5395 -28.5786))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059099-250525065834625/datasets/export for details.
DOI: 10.15468/dl.7kbd3s
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthocleithron chapini Nichols & Griscom, 1917",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((45.66 11.3473,45.0861 11.0599,46.1382 11.0599,46.1382 11.2722,45.66 11.3473))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059100-250525065834625/datasets/export for details.
DOI: 10.15468/dl.uwbv6n
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthocleithron chapini Nichols & Griscom, 1917",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((37.3005 22.3477,37.1382 22.4869,37.1382 20.0599,37.7663 20.0599,37.7668 21.2899,37.3972 21.7772,37.3005 22.3477))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059102-250525065834625/datasets/export for details.