cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2fk2z2
title: CCDC 2250754: Experimental Crystal Structure Determination

description: Related Article: I.B. Setshedi, A. Lemmerer, M.G. Smith|2023|Acta Crystallogr.,Sect.E:Cryst.Commun.|79|682|doi:10.1107/S2056989023005698
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/chnfyfd2k9.1
title: Play and tickling responses map to the lateral columns of the rat periaqueductal gray

description: This repository contains the data and code for figures of the paper "Play and tickling responses map to the lateral columns of the rat periaqueductal gray " (2023)
Authors: Natalie Gloveli, Jean Simonnet, Wei Tang, Miguel Concha-Miranda, Eduard Maier, Anton Dvorzhak, Dietmar Schmitz and Michael Brecht
DOI: 10.5517/ccdc.csd.cc2gggl0
title: CCDC 2278022: Experimental Crystal Structure Determination

description: Related Article: Z.A. Krevlin, I.C. Bote, M.C.F. Crespo, C.C. Lam, C.D. McMillen, M.M. Majireck|2023|Acta Crystallogr.,Sect.E:Cryst.Commun.|79|698|doi:10.1107/S2056989023005741
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ghp8y
title: CCDC 2279190: Experimental Crystal Structure Determination

description: Related Article: J.H. Halz, A. Hentsch, C. Wagner, K. Merzweiler|2023|Acta Crystallogr.,Sect.E:Cryst.Commun.|79|707|doi:10.1107/S205698902300587X
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ghp9z
title: CCDC 2279191: Experimental Crystal Structure Determination

description: Related Article: J.H. Halz, A. Hentsch, C. Wagner, K. Merzweiler|2023|Acta Crystallogr.,Sect.E:Cryst.Commun.|79|707|doi:10.1107/S205698902300587X
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ghpb0
title: CCDC 2279192: Experimental Crystal Structure Determination

description: Related Article: J.H. Halz, A. Hentsch, C. Wagner, K. Merzweiler|2023|Acta Crystallogr.,Sect.E:Cryst.Commun.|79|707|doi:10.1107/S205698902300587X
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fpdsb
title: CCDC 2254902: Experimental Crystal Structure Determination

description: Related Article: S.S. Khan, M.B.H. Howlader, M.C. Sheikh, R. Miyatake, E. Zangrando|2023|Acta Crystallogr.,Sect.E:Cryst.Commun.|79|714|doi:10.1107/S2056989023005935
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.23791467
title: Models for on groundwater recharge in variably-saturated subsurface flow models

description: Input files of models
DOI: 10.6084/m9.figshare.23799849
title: Identification of novel nuclear pore complex associated proteins in esophageal carcinoma by an integrated bioinformatics analysis

description: Nucleoporins (NUPs) are components of the nuclear pore complex (NPC) that participate in the nucleocytoplasmic transport of macromolecules as well as in many essential processes that may be led to carcinogenesis. We selected three expression profile microarray datasets from GEO and as well as TCGA data to identify differentially expressed NUPs genes in esophageal carcinoma. Our findings indicated that NUP133, NUP37, NUP43, NUP50, GLE1 and NDC1 are overexpressed in esophageal carcinoma, among which NUP50 and GLE1genes are reported for the first time in esophageal carcinoma. All identified NUPs were also associated with distant metastasis. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.23799849.v1
title: Identification of novel nuclear pore complex associated proteins in esophageal carcinoma by an integrated bioinformatics analysis

description: Nucleoporins (NUPs) are components of the nuclear pore complex (NPC) that participate in the nucleocytoplasmic transport of macromolecules as well as in many essential processes that may be led to carcinogenesis. We selected three expression profile microarray datasets from GEO and as well as TCGA data to identify differentially expressed NUPs genes in esophageal carcinoma. Our findings indicated that NUP133, NUP37, NUP43, NUP50, GLE1 and NDC1 are overexpressed in esophageal carcinoma, among which NUP50 and GLE1genes are reported for the first time in esophageal carcinoma. All identified NUPs were also associated with distant metastasis. Communicated by Ramaswamy H. Sarma
DOI: 10.5281/zenodo.8192697
title: arion_rufus_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.8192696
title: arion_rufus_spades_01.fasta.gz

description: .
DOI: 10.5063/f10c4t7t
title: Data: Implementing a rapid geographic range expansion - the role of behavior changes

description: It is generally thought that behavioral flexibility, the ability to change behavior when circumstances change, plays an important role in the ability of species to rapidly expand their geographic range. Great-tailed grackles (Quiscalus mexicanus) are a social, polygamous species that is rapidly expanding its geographic range by settling in new areas and habitats. They are behaviorally flexible and highly associated with human-modified environments, eating a variety of human foods in addition to foraging on insects and on the ground for other natural food items. They offer an opportunity to assess the role of behavior change over the course of their expansion. We compared behavior in wild-caught grackles from two populations across their range (an older population in the middle of the northern expansion front: Tempe, Arizona, and a more recent population on the northern edge of the expansion front: Woodland, California) to investigate whether certain behaviors (flexibility, innovativeness, exploration, and persistence) have higher averages and variances in the newer or older population. We found that grackles in the edge population had a higher flexibility variance (measured by reversal learning) and a higher persistence average (they participated in a larger proportion of trials), and that there were no population differences in average levels of flexibility, innovativeness (number of loci solved on a multiaccess box), or exploration (latency to approach a novel environment). Our results elucidated that individuals differentially expressing a particular behavior in an edge population could facilitate the rapid geographic range expansion of great-tailed grackles, and we found no support for the importance of several traits that were hypothesized to be involved in such an expansion. Our findings highlight the value of population studies and of breaking down cognitive concepts into direct measures of individual abilities to better understand how species might adapt to novel circumstances.
DOI: 10.17632/vbvw7y6stc.1
title: dataset

description: 
this is my dataset
test	value	lowest_normal_range	highest_normal_range	result
ALT (GPT)	8.60	0.0	31.0	0
AST (GOT)	14.80	0.0	31.0	0
Calcium Phosphonazo	9.64	8.6	10.3	0
Creatinine	0.83	0.6	1.1	0
C-Reactive Protein	42.98	0.0	5.0	1

It appears that you have a dataset with medical test results for various parameters. Each row represents a specific test, and the columns provide information about the test, its value, the lowest normal range, the highest normal range, and the result.

Here's a breakdown of the columns:

1. `test`: This column contains the name of the medical test, such as ALT (GPT), AST (GOT), Calcium Phosphonazo, Creatinine, and C-Reactive Protein.

2. `value`: This column represents the actual value obtained from the medical test.

3. `lowest_normal_range`: This column indicates the lowest value within the normal range for that specific test.

4. `highest_normal_range`: This column indicates the highest value within the normal range for that specific test.

5. `result`: This column contains the result of the test, typically denoted as 0 or 1. It's likely that 0 indicates a normal result, and 1 indicates an abnormal or elevated result.

Using this dataset, you can perform various analyses and insights related to the medical test results. Some potential analyses include:

1. **Identifying Abnormal Results:** You can filter the dataset to identify tests with a result of 1, indicating abnormal values outside the normal range. This can help in the early detection of health issues.

2. **Range Comparison:** By comparing the `value` column with the `lowest_normal_range` and `highest_normal_range`, you can determine if a specific test result falls within the normal range or if it is below or above the normal limits.

3. **Statistics and Visualization:** You can calculate statistical measures like mean, median, standard deviation, etc., for each test and visualize the data through plots or charts to gain insights into the distribution of test results.

4. **Correlations:** You can explore possible correlations between different test results to understand how they might be related in the context of medical conditions.

5. **Alerting System:** If this dataset is being used in a real-time healthcare setting, you can set up an alerting system to notify healthcare professionals when certain test results exceed the normal range, enabling timely intervention.

Remember that medical data handling must be done with care, ensuring patient privacy and adhering to ethical and legal guidelines, especially if this dataset contains sensitive patient information. Additionally, it's essential to involve qualified healthcare professionals in the interpretation of the results and any decisions based on the data.
DOI: 10.5281/zenodo.8192737
title: On strong anti-learning of parity

description: This upload contains a dataset and additional information for the paper On strong anti-learning of parity, by Alexei Lisitsa and Alexei Vernitski (accepted for OL2A 2023 conference)
DOI: 10.5281/zenodo.8192736
title: On strong anti-learning of parity

description: This upload contains a dataset and additional information for the paper On strong anti-learning of parity, by Alexei Lisitsa and Alexei Vernitski (accepted for OL2A 2023 conference)
DOI: 10.35077/add-sip
title: Male_4_6to7_days_posterior: Image stack of a wild type Canton S fly head (posterior)

description: Image stacks of wild type Canton S fly heads using white light illumination. These images were used to classify and quantify the head bristles (mechanosensory structures). The processed images are published in Figure 1 and Figure 1 – figure supplements 1-2 of the manuscript “Somatotopic organization among parallel sensory pathways that promote a grooming sequence in Drosophila (https://doi.org/10.1101/2023.02.11.528119)”. The stacks used to produce these images are organized based on gender, individual (e.g. Fly_1 and Fly_2), and head orientation (e.g. anterior and posterior).
description: A full protocol describing this work is available in the associated manuscript at manuscript “Somatotopic organization among parallel sensory pathways that promote a grooming sequence in Drosophila (https://doi.org/10.1101/2023.02.11.528119)”.
description: DATASET METADATA: title:'Male_4_6to7_days_posterior: Image stack of a wild type Canton S fly head (posterior)', GeneralModality:'other', Technique:'other', Other:'bright field' SPECIMEN METADATA: LocalID:'Male_4_6to7_days_posterior', Species:'Fruit fly', NCBITaxonomy:'NCBI:txid7227', Age:'6 to 7', Ageunit:'Days', Sex:'Male', Genotype:'Canton S (wild type)', OrganName:'Peripheral', SampleLocalID:'Male_4_6to7_days_posterior', Locations:'Peripheral' INSTRUMENT METADATA: MicroscopeType:'Confocal', MicroscopeManufacturerAndModel:'Zeiss Axio Examiner D1', ObjectiveName:'Zeiss 10x objective (Achroplan 10x/0.25) ', ObjectiveNA:'0.25', ObjectiveMagnification:'10x' IMAGE METADATA: xAxis:'left-to-right', yAxis:'left-to-right', zAxis:'left-to-right', Number:'white', displayColor:'white', stepSizeX:'0.432129', stepSizeY:'0.432129'
DOI: 10.5281/zenodo.7773984
title: Dataset supporting the paper "Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities"

description: Datasets involved in the construction and benchmarking of the CollecTRI-derived regulons as presented in the paper "Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities".
DOI: 10.5281/zenodo.7773985
title: Dataset supporting the paper "Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities"

description: Datasets involved in the construction and benchmarking of the CollecTRI-derived regulons as presented in the paper "Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities".
DOI: 10.5281/zenodo.8192729
title: Dataset supporting the paper "Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities"

description: Datasets involved in the construction and benchmarking of the CollecTRI-derived regulons as presented in the paper "Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities".
DOI: 10.25505/fiz.icsd.cc2g5rxb
title: CSD 2269662: Experimental Crystal Structure Determination

description: Related Article: R.T. Fredrickson, D.C. Fredrickson|2023|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|79|320|doi:10.1107/S2052520623005292
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.35077/add-sit
title: Male_4_6to7_days_ventral: Image stack of a wild type Canton S fly head (ventral)

description: Image stacks of wild type Canton S fly heads using white light illumination. These images were used to classify and quantify the head bristles (mechanosensory structures). The processed images are published in Figure 1 and Figure 1 – figure supplements 1-2 of the manuscript “Somatotopic organization among parallel sensory pathways that promote a grooming sequence in Drosophila (https://doi.org/10.1101/2023.02.11.528119)”. The stacks used to produce these images are organized based on gender, individual (e.g. Fly_1 and Fly_2), and head orientation (e.g. anterior and posterior).
description: A full protocol describing this work is available in the associated manuscript at manuscript “Somatotopic organization among parallel sensory pathways that promote a grooming sequence in Drosophila (https://doi.org/10.1101/2023.02.11.528119)”.
description: DATASET METADATA: title:'Male_4_6to7_days_ventral: Image stack of a wild type Canton S fly head (ventral)', GeneralModality:'other', Technique:'other', Other:'bright field' SPECIMEN METADATA: LocalID:'Male_4_6to7_days_ventral', Species:'Fruit fly', NCBITaxonomy:'NCBI:txid7227', Age:'6 to 7', Ageunit:'Days', Sex:'Male', Genotype:'Canton S (wild type)', OrganName:'Peripheral', SampleLocalID:'Male_4_6to7_days_ventral', Locations:'Peripheral' INSTRUMENT METADATA: MicroscopeType:'Confocal', MicroscopeManufacturerAndModel:'Zeiss Axio Examiner D1', ObjectiveName:'Zeiss 10x objective (Achroplan 10x/0.25) ', ObjectiveNA:'0.25', ObjectiveMagnification:'10x' IMAGE METADATA: xAxis:'left-to-right', yAxis:'left-to-right', zAxis:'left-to-right', Number:'white', displayColor:'white', stepSizeX:'0.432129', stepSizeY:'0.432129'
DOI: 10.5517/ccdc.csd.cc2g62j9
title: CCDC 2269960: Experimental Crystal Structure Determination

description: Related Article: S.K. Abdel-Aal, M. Souhassou, P. Durand, C. Lecomte, A.S. Abdel-Rahman, N. Claiser|2023|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|79|314|doi:10.1107/S2052520623005309
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.23617221
title: Supplementary Material for: Timing of initiation of acute stroke rehabilitation and management corresponding to complications at primary stroke centers in Japan: a nationwide cross-sectional web-based questionnaire survey

description: Introduction: Many guidelines now recommend early rehabilitation for acute stroke patients. However, evidence remains lacking regarding the specific timings for initiation of various rehabilitation steps and management when complications are encountered in acute stroke rehabilitation. This survey aimed to investigate actual clinical situations in acute stroke rehabilitation in Japan, to improve the medical systems for rehabilitation and plan further studies. Methods: This nationwide, cross-sectional, web-based questionnaire survey was administered between February 7, 2022 and April 21, 2022, targeting all primary stroke centers (PSCs) in Japan. Among several components of the survey, this paper focused on the timing of the initiation of three rehabilitation steps (passive bed exercise; head elevation; and out-of-bed mobilization), along with the management of rehabilitation (continued or suspended) in the event of complications during acute stroke rehabilitation. We also investigated the influence of facility features on these contents. Results: Responses were obtained from 639 of the 959 PSCs surveyed (response rate: 66.6%). In cases of ischemic stroke and intracerebral hemorrhage, most PSCs initiated passive bed exercise on Day 1, head elevation on Day 1 and out-of-bed mobilization on Day 2 (with day of admission defined as Day 1). In cases with subarachnoid hemorrhage, rehabilitation steps were delayed compared to other stroke subtypes or showed wide variation depending on the facility. Passive bed exercise was accelerated by the presence of protocols for rehabilitation and weekend rehabilitation. Out-of-bed mobilization was accelerated by the presence of a stroke care unit. Facilities with board-certified rehabilitation doctors were cautious regarding the initiation of head elevation. Most PSCs suspended rehabilitation training in the event of symptomatic systemic/neurological complications. Conclusion: Our survey revealed the actual situation of acute stroke rehabilitation in Japan and indicated that some facility features appear to influence early increases in physical activity levels and early mobilization. Our survey provides fundamental data to improve the medical systems for acute stroke rehabilitation in the future.
DOI: 10.6084/m9.figshare.23617221.v1
title: Supplementary Material for: Timing of initiation of acute stroke rehabilitation and management corresponding to complications at primary stroke centers in Japan: a nationwide cross-sectional web-based questionnaire survey

description: Introduction: Many guidelines now recommend early rehabilitation for acute stroke patients. However, evidence remains lacking regarding the specific timings for initiation of various rehabilitation steps and management when complications are encountered in acute stroke rehabilitation. This survey aimed to investigate actual clinical situations in acute stroke rehabilitation in Japan, to improve the medical systems for rehabilitation and plan further studies. Methods: This nationwide, cross-sectional, web-based questionnaire survey was administered between February 7, 2022 and April 21, 2022, targeting all primary stroke centers (PSCs) in Japan. Among several components of the survey, this paper focused on the timing of the initiation of three rehabilitation steps (passive bed exercise; head elevation; and out-of-bed mobilization), along with the management of rehabilitation (continued or suspended) in the event of complications during acute stroke rehabilitation. We also investigated the influence of facility features on these contents. Results: Responses were obtained from 639 of the 959 PSCs surveyed (response rate: 66.6%). In cases of ischemic stroke and intracerebral hemorrhage, most PSCs initiated passive bed exercise on Day 1, head elevation on Day 1 and out-of-bed mobilization on Day 2 (with day of admission defined as Day 1). In cases with subarachnoid hemorrhage, rehabilitation steps were delayed compared to other stroke subtypes or showed wide variation depending on the facility. Passive bed exercise was accelerated by the presence of protocols for rehabilitation and weekend rehabilitation. Out-of-bed mobilization was accelerated by the presence of a stroke care unit. Facilities with board-certified rehabilitation doctors were cautious regarding the initiation of head elevation. Most PSCs suspended rehabilitation training in the event of symptomatic systemic/neurological complications. Conclusion: Our survey revealed the actual situation of acute stroke rehabilitation in Japan and indicated that some facility features appear to influence early increases in physical activity levels and early mobilization. Our survey provides fundamental data to improve the medical systems for acute stroke rehabilitation in the future.
DOI: 10.5517/ccdc.csd.cc29b8lj
title: CCDC 2125037: Experimental Crystal Structure Determination

description: Related Article: M. Herzberg, T. Rekis, A. Støttrup Larsen, A. Gonzalez, J. Rantanen, A. Østergaard Madsen|2023|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|79|330|doi:10.1107/S2052520623005607
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.