cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34943/c135dff8-44e8-4a98-8077-bf70cf9c4a96
title: Conception Bay Integrated CTD pH O2 Instrument Deployed 2023-12-13

description: The Sea-Bird Deep SeapHOx V2 SN 721-2038 was deployed on 2023-12-13 at Conception Bay. Conception Bay is located west of the city St. John's, Newfoundland. This device is a Integrated CTD pH O2 Instrument. The integrated CTD pH O2 Instrument allows for pH measurements to be combined with 
critical oceanographic and biological measurements of temperature, salinity, and oxygen. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.18434/mds2-3162
title: Differential Measurements of an AC Source with a Josephson Arbitrary Waveform Synthesizer
DOI: 10.6084/m9.figshare.25213604
title: qPCR_results

description: For all samples collected for each time point, qPCR was performed using an Applied Biosystems QuantStudio 3 system (Thermo Fisher Scientific, Darmstadt, Germany). Amplification and detection were performed in 96-well optical plates (Applied Biosystems) with SYBR-Green (Applied Biosystems). All amplifications were performed in duplicates in a final volume of 5 µL containing 13.8 µL of a 2xSYBR Green PCR Master Mix including ROX as a passive reference (Applied Biosystems), 500 nM of each primer <i>L. Crispatus</i><i> </i>(Lcrisp_CbsA2F: GTACCAAGCCAAAGCAAGAC - Crisp_CbsA2R: GTTTGAAGCCTTTACGTAAGTC), <i>L jensenii</i><i> </i>(L_jensenii-Fw: AGTTCTTCGGAATGGACATAG - L_jensenii-Rev: GCCGCCTTTTAAACTTCT), <i>L. gasseri</i> (L_gasseri-Fw: TCAAGAGCTGTTAAGGCTGT - L_gasseri-Rev: CTATCGCTTCAAGTGCTTT), <i>L. iners</i> (L_iners-Fw: GTCTGCCTTGAAGATCGG - L_iners-Rev: ACAGTTGATAGGCATCATC), and <i>L. rhamnosus</i> (L_rhamnosus-Fw: TGCTTGCATCTTGATTTAATTTTG - L_rhamnosus-Rev: GTCCATTGTGGAAGATTCCC) and 1.2 µL of template DNA (0.5 mg/mL). For amplification, the standard protocol of the Applied Biosystems QuantStudio 3 system was followed, i.e., an initial cycle at 95°C for 10min, followed by 40 cycles at 95°C for 15 s, and 1 min at 60°C. To check for PCR product specificity, melting curve (Tm) analysis was performed, increasing the temperature from 60°C to 95°C at a rate of 0.2°C per second with continuous fluorescence monitoring. Standard curves for quantification consisted of 10-fold serial dilutions in the range of 10<sup>8</sup>–10<sup>0</sup> copies of the 16S rRNA gene of the <i>E. coli</i> (Invitrogen, C404010) amplified with primers 27F (50-GTTTGATCCTGGCTCAG-30) and 1492R (50-CGGCTACCTTGTTACGAC-30). The total amount of bacterial 16S in rectal swabs was quantified with universal primers, Univ 337F 50-ACTCCTACGGGAGGCAGCAGT-30 and Univ 518R 50-GTATTACCGCGGCTGCTGGCAC-30.
DOI: 10.6084/m9.figshare.14361507
title: Additional file 1 of Integrated analysis of lncRNA, miRNA and mRNA profiles reveals potential lncRNA functions during early HIV infection

description: Additional file 1: Table S1. Clinical characteristics of participants
DOI: 10.6084/m9.figshare.14361507.v1
title: Additional file 1 of Integrated analysis of lncRNA, miRNA and mRNA profiles reveals potential lncRNA functions during early HIV infection

description: Additional file 1: Table S1. Clinical characteristics of participants
DOI: 10.6084/m9.figshare.14361522.v1
title: Additional file 6 of Integrated analysis of lncRNA, miRNA and mRNA profiles reveals potential lncRNA functions during early HIV infection

description: Additional file 6: Table S6. Experimentally validated miRNA-mRNA interactions from miRTarBase in ceRNA network.
DOI: 10.6084/m9.figshare.16986879.v1
title: Additional file 2 of Study on the application of King’s combined uterine suture for hemostasis during cesarean section

description: Additional file 2.
DOI: 10.6084/m9.figshare.14889607
title: Additional file 13 of Down-regulation of BCL2L13 renders poor prognosis in clear cell and papillary renal cell carcinoma

description: Additional file 13: Correlation of the target miRNA and BCL2L13 in ccRCC, pRCC.
DOI: 10.6084/m9.figshare.9122627.v1
title: 134 shell species images

description: 134 shell species’ images are analysed by three (colour, shape and texture) feature extraction methods
DOI: 10.6084/m9.figshare.9122630
title: texture feature processing

description: The texture feature extracted using the texture feature extraction method (refer to Method: Texture feature extraction section), is accessible as the file texture_feature_raw.xlsx along with its post-processing as the file texture_feature_processing.xlsx.
DOI: 10.6084/m9.figshare.9122630.v1
title: texture feature processing

description: The texture feature extracted using the texture feature extraction method (refer to Method: Texture feature extraction section), is accessible as the file texture_feature_raw.xlsx along with its post-processing as the file texture_feature_processing.xlsx.
DOI: 10.6084/m9.figshare.14361635
title: Additional file 2 of Feedback activation of NF-KB signaling leads to adaptive resistance to EZH2 inhibitors in prostate cancer cells

description: Additional file 2. The gene expression profile of LNCaP cells treated with a EZH2 inhibitor EPZ6438.
DOI: 10.6084/m9.figshare.14889601
title: Additional file 11 of Down-regulation of BCL2L13 renders poor prognosis in clear cell and papillary renal cell carcinoma

description: Additional file 11: Expression of BCL2L13 in pan-cancer.
DOI: 10.6084/m9.figshare.16986871.v1
title: Additional file 1 of First comprehensive proteome analysis of lysine crotonylation in Streptococcus agalactiae, a pathogen causing meningoencephalitis in teleosts

description: Additional file 1.
DOI: 10.6084/m9.figshare.23802660.v1
title: MYOD induced lnc-MEG3 promotes porcine satellite cell differentiation via interacting with DLST

description: Long non-coding RNAs (lncRNAs) are involved in the process of muscle cell differentiation and play an important role. Previous studies have shown that lncRNA-MEG3 promotes the differentiation of porcine skeletal muscle satellite cells (PSCs), but the regulatory mechanism of MEG3 interaction with target protein has not been well studied. We demonstrated that MEG3 can bind dihydrolipoamide succinyltransferase (DLST) by RNA pull down and RIP-qPCR. Subsequently, knockdown and overexpression experiments showed that DLST promotes PSCs differentiation. Rescue experiments showed that the expression of DLST protein was significantly increased with MEG3 overexpression and decreased with MEG3 knockdown, while its mRNA expression was not changed. Furthermore, we have successfully predicted and validated that the transcription factor myogenic differentiation (MYOD) binds to the MEG3 core promoter though utilizing chromatin immunoprecipitation (CHIP) and luciferase reporter assays. The results indicated that MYOD acts as a transcription factor of MEG3 to promote MEG3 transcription. Knockdown of MEG3 in vivo indicated that MEG3 is involved in skeletal muscle regeneration. It is concluded that MYOD acts as a transcription factor to induce MEG3 expression. MEG3 acts as a molecular scaffold to bind and promote DLST protein expression. This paper provides a new molecular mechanism for MEG3 to promote the differentiation of PSCs.
DOI: 10.6084/m9.figshare.3376258
title: Essential control of mitochondrial morphology and function by chaperone-mediated autophagy through degradation of PARK7

description: As a selective degradation system, chaperone-mediated autophagy (CMA) is essential for maintaining cellular homeostasis and survival under stress conditions. Increasing evidence points to an important role for the dysfunction of CMA in the pathogenesis of Parkinson disease (PD). However, the mechanisms by which CMA regulates neuronal survival under stress and its role in neurodegenerative diseases are not fully understood. <i>PARK7/DJ-1</i> is an autosomal recessive familial PD gene. PARK7 plays a critical role in antioxidative response and its dysfunction leads to mitochondrial defects. In the current study, we showed that CMA mediated the lysosome-dependent degradation of PARK7. Importantly, CMA preferentially removed the oxidatively damaged nonfunctional PARK7 protein. Furthermore, CMA protected cells from mitochondrial toxin MPP<sup>+</sup>-induced changes in mitochondrial morphology and function, and increased cell viability. These protective effects were lost under PARK7-deficiency conditions. Conversely, overexpression of PARK7 significantly attenuated the mitochondrial dysfunction and cell death exacerbated by blocking CMA under oxidative stress. Thus, our findings reveal a mechanism by which CMA protects mitochondrial function by degrading nonfunctional PARK7 and maintaining its homeostasis, and dysregulation of this pathway may contribute to the neuronal stress and death in PD pathogenesis.
DOI: 10.6084/m9.figshare.9122642
title: raw color feature

description: The colour feature extracted by the aforementioned colour feature extraction method (refer to Method: Colour feature extraction section), is also available as the file colour_feature_raw.xlsx, where post-processing by calculating the mean (μ) and standard deviation (s) can be found in the file colour_feature_processing.xlsx.
DOI: 10.6084/m9.figshare.14361641.v1
title: Additional file 4 of Feedback activation of NF-KB signaling leads to adaptive resistance to EZH2 inhibitors in prostate cancer cells

description: Additional file 4. List of top 100 co-expressed genes of SOX9 from the TCGA prostate cancer database.
DOI: 10.6084/m9.figshare.23802660
title: MYOD induced lnc-MEG3 promotes porcine satellite cell differentiation via interacting with DLST

description: Long non-coding RNAs (lncRNAs) are involved in the process of muscle cell differentiation and play an important role. Previous studies have shown that lncRNA-MEG3 promotes the differentiation of porcine skeletal muscle satellite cells (PSCs), but the regulatory mechanism of MEG3 interaction with target protein has not been well studied. We demonstrated that MEG3 can bind dihydrolipoamide succinyltransferase (DLST) by RNA pull down and RIP-qPCR. Subsequently, knockdown and overexpression experiments showed that DLST promotes PSCs differentiation. Rescue experiments showed that the expression of DLST protein was significantly increased with MEG3 overexpression and decreased with MEG3 knockdown, while its mRNA expression was not changed. Furthermore, we have successfully predicted and validated that the transcription factor myogenic differentiation (MYOD) binds to the MEG3 core promoter though utilizing chromatin immunoprecipitation (CHIP) and luciferase reporter assays. The results indicated that MYOD acts as a transcription factor of MEG3 to promote MEG3 transcription. Knockdown of MEG3 in vivo indicated that MEG3 is involved in skeletal muscle regeneration. It is concluded that MYOD acts as a transcription factor to induce MEG3 expression. MEG3 acts as a molecular scaffold to bind and promote DLST protein expression. This paper provides a new molecular mechanism for MEG3 to promote the differentiation of PSCs.
DOI: 10.6084/m9.figshare.9122621.v1
title: all shell images

description: The reorganized shell images dataset contains 29622 samples, where the complete 59244 images are available from the file all_shell_images.zip
DOI: 10.6084/m9.figshare.9122633
title: color feature processing

description: The colour feature extracted by the aforementioned colour feature extraction method (refer to Method: Colour feature extraction section), is also available as the file colour_feature_raw.xlsx, where post-processing by calculating the mean (μ) and standard deviation (s) can be found in the file colour_feature_processing.xlsx.
DOI: 10.6084/m9.figshare.14361516
title: Additional file 4 of Integrated analysis of lncRNA, miRNA and mRNA profiles reveals potential lncRNA functions during early HIV infection

description: Additional file 4: Table S4. miRNA expression profiling.
DOI: 10.6084/m9.figshare.14361525.v1
title: Additional file 7 of Integrated analysis of lncRNA, miRNA and mRNA profiles reveals potential lncRNA functions during early HIV infection

description: Additional file 7: Table S7. Enrichment analyses of target mRNAs in ceRNA neworks.
DOI: 10.6084/m9.figshare.14361516.v1
title: Additional file 4 of Integrated analysis of lncRNA, miRNA and mRNA profiles reveals potential lncRNA functions during early HIV infection

description: Additional file 4: Table S4. miRNA expression profiling.
DOI: 10.6084/m9.figshare.14361662
title: Additional file 1 of A high-density genetic map construction and sex-related loci identification in Chinese Giant salamander

description: Additional file 1: Table S1. Original data of each sample for RAD sequencing
DOI: 10.6084/m9.figshare.14361665.v1
title: Additional file 2 of A high-density genetic map construction and sex-related loci identification in Chinese Giant salamander

description: Additional file 2: Table S2. Genotyping information and location of each SNP on the 30 LGs
DOI: 10.6084/m9.figshare.14361668
title: Additional file 3 of A high-density genetic map construction and sex-related loci identification in Chinese Giant salamander

description: Additional file 3: Table S3 Distribution of each SNP on the 30 LGs
DOI: 10.6084/m9.figshare.9122675
title: all color features

description: This file contains color features of all shell images.
DOI: 10.6084/m9.figshare.14361510.v1
title: Additional file 2 of Integrated analysis of lncRNA, miRNA and mRNA profiles reveals potential lncRNA functions during early HIV infection

description: Additional file 2: Table S2. LncRNA expression profiling.
DOI: 10.25505/fiz.icsd.cc28kf4f
title: CSD 2102114: Experimental Crystal Structure Determination

description: Related Article: Chen Bai, Bingliang Cheng, Kewang Zhang, Min Zhang, Shilie Pan, Junjie Li|2021|Dalton Trans.|50|16401|doi:10.1039/D1DT03215A
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28kjjx
title: CCDC 2102219: Experimental Crystal Structure Determination

description: Related Article: Teng-Fei Cao, Hao Xiao, Zhi-Huang Xu, Li-Wang Ye, Yuan-Jie Wang, Xin-Xin Zhuang|2021|Eur.J.Inorg.Chem.|2021|3950|doi:10.1002/ejic.202100567
description: Related Article: Teng-Fei Cao, Hao Xiao, Zhi-Huang Xu, Li-Wang Ye, Yuan-Jie Wang, Xin-Xin Zhuang|2021|Eur.J.Inorg.Chem.|2021|3950|doi:10.1002/ejic.202100567
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28kf7j
title: CCDC 2102117: Experimental Crystal Structure Determination

description: Related Article: Teng-Fei Cao, Hao Xiao, Zhi-Huang Xu, Li-Wang Ye, Yuan-Jie Wang, Xin-Xin Zhuang|2021|Eur.J.Inorg.Chem.|2021|3950|doi:10.1002/ejic.202100567
description: Related Article: Teng-Fei Cao, Hao Xiao, Zhi-Huang Xu, Li-Wang Ye, Yuan-Jie Wang, Xin-Xin Zhuang|2021|Eur.J.Inorg.Chem.|2021|3950|doi:10.1002/ejic.202100567
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28kf8k
title: CCDC 2102118: Experimental Crystal Structure Determination

description: Related Article: Teng-Fei Cao, Hao Xiao, Zhi-Huang Xu, Li-Wang Ye, Yuan-Jie Wang, Xin-Xin Zhuang|2021|Eur.J.Inorg.Chem.|2021|3950|doi:10.1002/ejic.202100567
description: Related Article: Teng-Fei Cao, Hao Xiao, Zhi-Huang Xu, Li-Wang Ye, Yuan-Jie Wang, Xin-Xin Zhuang|2021|Eur.J.Inorg.Chem.|2021|3950|doi:10.1002/ejic.202100567
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc28khr3
title: CSD 2102195: Experimental Crystal Structure Determination

description: Related Article: Yuchen Yan, Yanna Chen, Bao Jiang, Qun Jing, Jun Zhang|2021|New J.Chem.|45|19883|doi:10.1039/D1NJ03883D
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27843s
title: CCDC 2063394: Experimental Crystal Structure Determination

description: Related Article: J. Ma, W.-Z. Zhang, Y. Liu, W.-T. Yi|2021|Acta Crystallogr.,Sect.E:Cryst.Commun.|77|939|doi:10.1107/S2056989021008355
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27mytn
title: CSD 2074762: Experimental Crystal Structure Determination

description: Related Article: Kaitong Liu, Jian Han, Shilie Pan|2021|Dalton Trans.|50|13031|doi:10.1039/D1DT01368H
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27r8ny
title: CCDC 2077950: Experimental Crystal Structure Determination

description: Related Article: D.N.K. Pham, A.R. Chadeayne, J.A. Golen, D.R. Manke|2021|Acta Crystallogr.,Sect.E:Cryst.Commun.|77|522|doi:10.1107/S2056989021003753
description: Related Article: P. Wytrych, J. Utko, T. Lis, Ł. John|2021|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|77|522|doi:10.1107/S2053229621008160
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27r8pz
title: CCDC 2077951: Experimental Crystal Structure Determination

description: Related Article: D.N.K. Pham, A.R. Chadeayne, J.A. Golen, D.R. Manke|2021|Acta Crystallogr.,Sect.E:Cryst.Commun.|77|522|doi:10.1107/S2056989021003753
description: Related Article: P. Wytrych, J. Utko, T. Lis, Ł. John|2021|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|77|522|doi:10.1107/S2053229621008160
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28m67c
title: CCDC 2103822: Experimental Crystal Structure Determination

description: Related Article: K. Rue, R.G. Raptis|2021|Acta Crystallogr.,Sect.E:Cryst.Commun.|77|1|doi:10.1107/S2056989021008604
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc28mcx6
title: CSD 2103998: Experimental Crystal Structure Determination

description: Related Article: Sebastian Kunkel, Jamal Nasir, Jörn Schmedt auf der Günne, Rainer Niewa|2021|Eur.J.Inorg.Chem.|2021|4647|doi:10.1002/ejic.202100721
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc28mcy7
title: CSD 2103999: Experimental Crystal Structure Determination

description: Related Article: Sebastian Kunkel, Jamal Nasir, Jörn Schmedt auf der Günne, Rainer Niewa|2021|Eur.J.Inorg.Chem.|2021|4647|doi:10.1002/ejic.202100721
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc28mf4h
title: CSD 2104036: Experimental Crystal Structure Determination

description: Related Article: Alisa Gordeeva, Istvan Z. Jenei, Kristina Spektor, Olga Yu. Vekilova, Ulrich Häussermann|2021|Z.Naturforsch.,B:Chem.Sci.|76|599|doi:10.1515/znb-2021-0095
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc284z5l
title: CCDC 2090149: Experimental Crystal Structure Determination

description: Related Article: Areej Al-Dabbagh, Zhifang Guo, Peter Junk, Jun Wang|2021|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|77|577|doi:10.1107/S2053229621008512
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc284z6m
title: CCDC 2090150: Experimental Crystal Structure Determination

description: Related Article: Areej Al-Dabbagh, Zhifang Guo, Peter Junk, Jun Wang|2021|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|77|577|doi:10.1107/S2053229621008512
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.