cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10232462
title: Smoother: a unified and modular framework for incorporating structural dependency in spatial omics data: intermediate results

description: This directory contains all intermediate results generated in the "Smoother: a unified and modular framework for incorporating structural dependency in spatial omics data" for reproducibility purpose. Associated scripts are available at https://github.com/JiayuSuPKU/Smoother_paper. Raw and processed data can be downloaded at https://zenodo.org/records/10223862.
Note that some intermediate results and figures in the notebooks may not be exactly the same as those in the paper due to the randomness in some analysis steps, but should be very close.
DOI: 10.25345/c5280589w
title: MassIVE MSV000093545 - GNPS - The identification of quaternary ammonium compounds in Chinese estuaries
title: We identified 50 structurally diverse antibacterial QACs in sediments.
DOI: 10.25919/2nh3-b757
title: Parkes observations for project P960 semester 2023OCTS_02

description: We aim to carry out receiver pointing and characterisation tests of Parkes receivers. Typically, these tests are carried out after the receiver package is installed, but time does not always allow for proper characterisation. Receivers for consideration include UWL, MARS and 13MM packages. In addition to cross-referencing C007 for flux calibration via pointing, we aim to conduct gain-elevation and system temperature experiments using the Moon, to ensure users of the Parkes Observatory have the most accurate information available for calibration purposes.
DOI: 10.25919/t2we-5h95
title: Parkes observations for project P1172 semester 2023OCTS_03

description: PSR J1713+0747 is a very important millisecond pulsar for global pulsar timing array campaigns, due to its long-term observation history, very stable and narrow profile and strong S/N. In April 2021, the pulsar experienced a significant event related to a change in its magnetosphere, presented as an observable change in the pulsar profile. Since then, the pulsar has been slowly recovering and we wish to observe this recovery with high-cadence observations to allow us to create a detailed time-resolved series of variations in the MSPs profile, polarisation, and other properties. Under this proposal, we wish to probe the profile recovery on weekly timescales (once per week per month), revealing additional short timescale behaviours, indicative of changes in the magnetosphere which are not available to other telescopes in the world, thanks to the Parkes UWL. This will also allow us to determine if the magnetosphere has returned to its original configuration or is settling into a new one. Understanding the recovery of this event is key for demonstrating that such pulsars are still viable clocks for use in gravitational wave studies, and in turn, provide us with new data on how the normally stable magnetosphere of this millisecond pulsar responds to an impulsive change in state.
DOI: 10.15151/esrf-es-1414500836
title: ex situ nano-tomo measurements

description: feasibility tests on several samples for future users experiments post-mortem scans of samples from experiment MA5725
DOI: 10.15151/esrf-es-1317773810
title: Molecular machines in energy transduction, cellular signaling and defense processes

description: Since this BAG is composed of seven different working groups from three different locations (university of Cologne, university of Bochum, university of Düsseldorf), the projects for this proposal are of rather heterogeneous nature. Nonetheless, we are focusing on 5 main topics: 1.) proteins involved in transport processes, transporters or channels, either embedded in the membrane or acting in the cytosol (e.g. ABC transporters, fusion proteins, regulators) 2.) proteins involved in the immune system, pathogen invasion or defense/resistance processes (dehydratases, toxins, binding proteins) 3.) proteins involved or associated with diseases like cancer or developmental disorders (e.g. protein kinase, toxins, antibodies) 4.) enzymes of putative industrial use to encounter increasing environmental pollution (e.g. transaminases, estereases) 5.) proteins involved in light harvesting, photosynthesis (C3/C4 pathways) and chromophore binding proteins (e.g. synthases, photosensor domains)
DOI: 10.15151/esrf-es-1317802137
title: Structural Biology BAG - Portugal

description: The Portuguese MX BAG includes 16 PIs from three different institutions. Our research interests include soluble and membrane proteins of biomedical interest from humans or pathogenic organisms, several of which can be drug targets. Focus is also given to structural enzymology, aimed at the elucidation of reaction mechanisms, active sites, and inhibition tolerance in proteins with potential biotechnology applications. In several cases, complementary structural biology approaches are being used, combining MX with SAXS and CryoEM.
DOI: 10.15151/esrf-es-1318529809
title: PROTEINS RELATED TO PATHOGENESIS OF DISEASES, VIRAL PROTEINS, CELL DIVISION, SIGNALLING AND CHROMATIN PROCESSES

description: Our BAG is composed of eight PIs at six different institutions in Italy and Austria. We focus on a large variety of human, bacterial, viral and synthetic protein targets and address diverse biological contexts by combining structural biology with biochemistry, biophysics, cellular and in vivo investigations.
DOI: 10.15151/esrf-es-1360187233
title: Structural evolution of a glassy monoatomic Ta film during heating

description: In order to unravel mechanism of glass transition and crystallization of metallic glass, we propose to perform in-situ heating PDF tests of monoatomic glassy Ta film which was developed by us recently. The reason is that, by using monoatomic metallic glass, coordination number and bonding length can be calculated, and the partial PDF problem will be totally avoided, and the crystallization product will be single phase which make Rietveld refinement possible. Based on such experimental data, we think that we will establish physical theory of glass transition and crystallization of metallic glass.
DOI: 10.15151/esrf-es-1420311220
title: XRD-CT of battery electrodes

description: Discharged battery anodes scanned with XRD-CT
DOI: 10.15151/esrf-es-1420383071
title: XMCD characterization of epitaxial CrCl3 ferromagnet

description: XMCD characterization of epitaxial CrCl3 ferromagnet
DOI: 10.15151/esrf-es-1357822117
title: Enzyme-mimicking of iron-sites in metal-organic frameworks for methane oxidation to methanol

description: The aim is to use X-ray Absorption Near Edge Structure (XANES), X-ray Magnetic Circular Dichroism (XMCD) and Powder X-ray Diffraction (PXRD) to gain structural information on MOFs modified post-synthetically for catalytic purposes. The targeted compounds have been prepared by exposing MOF-808 to amino acid and carboxyl acid functions, to later on immobilize FeII or FeIII ions similarly than metalloenzyme and methane monooxygenase does. This synthetic strategy does not allow us to predict neither the oxidation state nor coordination environment of the metallic ions, which is essential to understand the catalytical activity of the final compounds in the oxidation of methane to methanol, specially after their activation with oxidant species as O2, H2O2 or NO2. In a long-term perspective, the knowledge gained from the proposed experiments will be used to establish a methodology to deliberately tune the catalytic sites installed into the pore space of MOFs, and hence, their functionality.
DOI: 10.15151/esrf-es-1357825354
title: Chemically induced glass-glass transition in a CeCoAl metallic glass at high pressure

description: The intense x-rays available at EBS-ESRF are known to be able to trigger undesired effects, like structural and chemical modifications in radiation sensitive materials. This apparent obstacle can also lead to the discovery of new, surprising, physical phenomena. Recently, we observed a structural expansion of a Ce65Al10Co25 metallic glass (MG) during high pressure compression which appears related to an x-ray induced or photocatalytic reactions between the MG and the pressure transmitting medium. We propose, here, to couple high pressure x-ray diffraction and x-ray absorption spectroscopy to study the structural evolution occurring in this glass under different chemical environments and irradiation conditions to trigger and control the transition and quantify the corresponding structural changes. A successful experiment will lead to the determination of the microscopic mechanisms behind the transition, and provide insights on the anomalous equation of state of the newly formed MG.
DOI: 10.15151/esrf-es-1402335301
title: Charge order in LaRu3Si2 at high pressures and low temperatures

description: Within this proposal we investigate the evolution of charge order in LaRu3Si2 with pressure and temperature by means of single crystal x-ray diffraction and diffuse scattering.
DOI: 10.6084/m9.figshare.24088811
title: Nanoparticles Stokes radius assessment through permeability coefficient determination within a new stratified epithelium on-chip model

description: Tissue barrier permeability plays a crucial role in determining the selective transport of substances across epithelial tissues, including drugs, cosmetic substances, and chemicals. The ability of these substances to cross through tissue barriers affects their absorption into the bloodstream and ultimately their effectiveness. Therefore, the determination of their permeability on these type of tissue barriers represents a useful tool for pharmaceutical and cosmetic industries as well as for toxicological studies. In this regard, microfluidic devices and organ-on-chip technologies are becoming more important to generate reliable data. We have designed and performed an alternative new stratified epithelia-on-chip model that allows to correlate the Stokes radius and the diffusion of molecules and/or nanoformulations through the <i>in vitro</i> generated barrier and establish a system suitable for the analysis of diffusion through stratified epithelium. Thus, extrapolating from experimental data we can predict the Stokes radius for unknown fluorescent labelled particles within a molecular size range, such as gold nanoparticles.
DOI: 10.6084/m9.figshare.24088811.v1
title: Nanoparticles Stokes radius assessment through permeability coefficient determination within a new stratified epithelium on-chip model

description: Tissue barrier permeability plays a crucial role in determining the selective transport of substances across epithelial tissues, including drugs, cosmetic substances, and chemicals. The ability of these substances to cross through tissue barriers affects their absorption into the bloodstream and ultimately their effectiveness. Therefore, the determination of their permeability on these type of tissue barriers represents a useful tool for pharmaceutical and cosmetic industries as well as for toxicological studies. In this regard, microfluidic devices and organ-on-chip technologies are becoming more important to generate reliable data. We have designed and performed an alternative new stratified epithelia-on-chip model that allows to correlate the Stokes radius and the diffusion of molecules and/or nanoformulations through the <i>in vitro</i> generated barrier and establish a system suitable for the analysis of diffusion through stratified epithelium. Thus, extrapolating from experimental data we can predict the Stokes radius for unknown fluorescent labelled particles within a molecular size range, such as gold nanoparticles.
DOI: 10.6084/m9.figshare.24709566
title: THESIS EXCEL DATA ENTRY.xlsx

description: Excel sheet of the data
DOI: 10.5281/zenodo.10115102
title: Placental Expression Quantitative Trait Loci In An East Asian Population

description: Analysis script, full eQTL summary statistics, and fine-mapping statistics of article "Placental Expression Quantitative Trait Loci In An East Asian Population". This data contains workflow and result of 102 East  Asian placental expression quantitative trait loci analysis.
Genotype from 102 cord blood used in the analysis is also included. Variants with minor allele frequencies less than 0.01 was filtered out to prevent personnel identification.
DOI: 10.5281/zenodo.10115103
title: Placental Expression Quantitative Trait Loci In An East Asian Population

description: Analysis script of article "Placental Expression Quantitative Trait Loci In An East Asian Population". This data contains workflow and result of 102 East  Asian placental expression quantitative trait loci analysis.
DOI: 10.5281/zenodo.10202334
title: Placental Expression Quantitative Trait Loci In An East Asian Population

description: Analysis script, full eQTL summary statistics, and fine-mapping statistics of article "Placental Expression Quantitative Trait Loci In An East Asian Population". This data contains workflow and result of 102 East  Asian placental expression quantitative trait loci analysis.
DOI: 10.5281/zenodo.10243341
title: Placental Expression Quantitative Trait Loci In An East Asian Population

description: Analysis script, full eQTL summary statistics, and fine-mapping statistics of article "Placental Expression Quantitative Trait Loci In An East Asian Population". This data contains workflow and result of 102 East  Asian placental expression quantitative trait loci analysis.
Genotype from 102 cord blood used in the analysis is also included. Variants with minor allele frequencies less than 0.01 was filtered out to prevent personnel identification.
DOI: 10.25919/tp5w-jy79
title: Parkes observations for project P1162 semester 2023OCTS_03

description: Pulsar timing is a powerful tool in studying pulsar physics. Discovering more exotic pulsar systems or timing pulsars with higher precision is an essential part of pulsar astronomy. As a recently discovered millisecond pulsar, PSR J1402+13 is an interesting source for follow-up timing observations. First, its apparent spin-down rate, as reported in the catalogue, was the highest among known millisecond pulsars, causing a seeming tension with the spin-up theory. Second, its apparent high flux density and small distance seemed to give a high timing precision. We have observed J1402+13 with high cadence in the past 9 months and obtained a phase-coherent solution, which gives a much lower pdot (~ 10^{-20} s/s) thus solves the tension with the spin-up theory. We apply for another 15 hours to observe the pulsar to further extend the timing baseline, which will refine our timing solution and help us clearly evaluate its timing precision and potential to be used for pulsar timing arrays. The observation will also help us study the scintillation effect of the pulsar and measure its steep spectral index. The more comprehensive measurements of the pulsar will also facilitate observations in optical and gamma-ray bands.
DOI: 10.15468/uy97fc
title: Checklist of earthworm species (Oligochaeta, Lumbricidae) of Kazakhstan

description: A checklist of earthworm species and subspecies from Kazakhstan (Annelida: Clitellata: Oligochaeta:Lumbricidae) according to own observations and published data
DOI: 10.5281/zenodo.10213631
title: Projekt 975_scRNAseq in DIO+ DQ_1
DOI: 10.5281/zenodo.10213632
title: Projekt 975_scRNAseq in DIO+ DQ_1
DOI: 10.5281/zenodo.8432872
title: Images drone UAV, Aeroport, Mayotte - 20220914

description: "Jeu de données composé d'images de drone DJI Mavic 2 Pro UAV acquises sur le site de Aeroport, Mayotte à la date suivante : 20220914.

Dans le cadre de la collaboration entre le Projet G2OI et Mayotte FMR (Future Maore Reef), l'objectif de la mission vise à étudier l'implantation de récifs artificiels dans le lagon de Mayotte sur plusieurs sites. En espace aérien contrôlé, les vols ont été exécutés en regard de la réglmentation et en contact avec la tour de contrôle de l'aéroport de Mayotte. 


Le dépôt est composé des éléments suivants:
    - 00_: Planche d'aperçu des images
    - DCIM.zip: Images brutes issues du drone
    - GPS.zip: Geopackage contenant l'emprise du survol ainsi que la géolocalisation des images accompagnées de leurs miniatures dans la table d'attribut en base64
    - METADATA.zip: Métadonnées au format ISO19115, Rapports avec miniatures des images de drone (dossier tb) et statistiques de vols.

Arborescence d'origine:
└─ 20220914_MYT-aeroport_UAV-02_3
  └─ DCIM
  └─ GPS
  └─ METADATA
    └─ tb

Informations de survol:
Différentes hauteurs de vols, angles des transects et angles de caméra ont été utilisés dans le but d'obtenir des données de qualité en fonction des conditions météorologiques et marines.
- Camera model and parameters:
 Make: Hasselblad
 Model: L1D-20c
 Width: 5472
 Height: 3648
 Focal: 28
 WhiteBalance: Manual
 ExposureMode: Auto Exposure
 ColoSpace: sRGB
 EV: -0.7
 MeteringMode: CenterWeightedAverage
 Camera Pitch: -75.00

- Survey informations:
 No Images: 327
 Median height: 70 meters
 Survey area: 7.71 hectares
 Survey from: 2022:09:14 11:35:17 to: 2022:09:14 11:49:42

Les dépôts suivants comprennent les données traitées avec OpenDroneMap"
description: This study was funded by the European Regional Development Fund (ERDF) within the programme Interreg V 2014-2020 through the project G2OI
DOI: 10.5281/zenodo.8432871
title: Orthophoto & DEM (MNE) issues d'images drone, UAV, Aeroport, Mayotte - 20220914

description: "Ce jeu de données présente les résultats des traitements photogrammétriques d'images de drone DJI Mavic 2 Pro UAV acquises sur le site de Aeroport, Mayotte à la date suivante : 20220914.

Dans le cadre de la collaboration entre le Projet G2OI et Mayotte FMR (Future Maore Reef), l'objectif de la mission vise à étudier l'implantation de récifs artificiels dans le lagon de Mayotte sur plusieurs sites. En espace aérien contrôlé, les vols ont été exécutés en regard de la réglmentation et en contact avec la tour de contrôle de l'aéroport de Mayotte. 


Le paramétrage du logiciel OpenDroneMap est partagé pour permettre la reproductibilité ou l'amélioration des traitements proposés:
[
        {
            'name': 'orthophoto-resolution',
            'value': 1
        },
        {
            'name': 'auto-boundary',
            'value': true
        },
        {
            'name': 'dem-resolution',
            'value': '2.0'
        },
        {
            'name': 'dsm',
            'value': true
        }
    ]

Le dépôt est composé des éléments suivants:
    - 00_: Planche d'aperçu des images
    - DCIM.zip: Images brutes issues du drone
    - GPS.zip: Geopackage contenant l'emprise du survol ainsi que la géolocalisation des images accompagnées de leurs miniatures dans la table d'attribut en base64
    - METADATA.zip: Métadonnées au format ISO19115, Rapports avec miniatures des images de drone (dossier tb) et statistiques de vols.
    - PROCESSED_DATA.zip: Orthophoto, DEM, nuages de points, ...

Arborescence d'origine:
└─ 20220914_MYT-aeroport_UAV-02_3
  └─ DCIM
  └─ GPS
  └─ METADATA
    └─ tb
  └─ PROCESSED_DATA

Informations de survol:
Différentes hauteurs de vols, angles des transects et angles de caméra ont été utilisés dans le but d'obtenir des données de qualité en fonction des conditions météorologiques et marines.
- Camera model and parameters:
 Make: Hasselblad
 Model: L1D-20c
 Width: 5472
 Height: 3648
 Focal: 28
 WhiteBalance: Manual
 ExposureMode: Auto Exposure
 ColoSpace: sRGB
 EV: -0.7
 MeteringMode: CenterWeightedAverage
 Camera Pitch: -75.00

- Survey informations:
 No Images: 327
 Median height: 70 meters
 Survey area: 7.71 hectares
 Survey from: 2022:09:14 11:35:17 to: 2022:09:14 11:49:42
"
description: This study was funded by the European Regional Development Fund (ERDF) within the programme Interreg V 2014-2020 through the project G2OI
DOI: 10.5281/zenodo.8432884
title: Orthophoto & DEM (MNE) issues d'images drone, UAV, Aeroport, Mayotte - 20220911

description: "Ce jeu de données présente les résultats des traitements photogrammétriques d'images de drone DJI Mavic 2 Pro UAV acquises sur le site de Aeroport, Mayotte à la date suivante : 20220911.

Dans le cadre de la collaboration entre le Projet G2OI et Mayotte FMR (Future Maore Reef), l'objectif de la mission vise à étudier l'implantation de récifs artificiels dans le lagon de Mayotte sur plusieurs sites. En espace aérien contrôlé, les vols ont été exécutés en regard de la réglmentation et en contact avec la tour de contrôle de l'aéroport de Mayotte. 


Le paramétrage du logiciel OpenDroneMap est partagé pour permettre la reproductibilité ou l'amélioration des traitements proposés:
[
        {
            'name': 'orthophoto-resolution',
            'value': 1
        },
        {
            'name': 'auto-boundary',
            'value': true
        },
        {
            'name': 'dem-resolution',
            'value': '2.0'
        },
        {
            'name': 'dsm',
            'value': true
        }
    ]

Le dépôt est composé des éléments suivants:
    - 00_: Planche d'aperçu des images
    - DCIM.zip: Images brutes issues du drone
    - GPS.zip: Geopackage contenant l'emprise du survol ainsi que la géolocalisation des images accompagnées de leurs miniatures dans la table d'attribut en base64
    - METADATA.zip: Métadonnées au format ISO19115, Rapports avec miniatures des images de drone (dossier tb) et statistiques de vols.
    - PROCESSED_DATA.zip: Orthophoto, DEM, nuages de points, ...

Arborescence d'origine:
└─ 20220911_MYT-aeroport_UAV-02_2
  └─ DCIM
  └─ GPS
  └─ METADATA
    └─ tb
  └─ PROCESSED_DATA

Informations de survol:
Différentes hauteurs de vols, angles des transects et angles de caméra ont été utilisés dans le but d'obtenir des données de qualité en fonction des conditions météorologiques et marines.
- Camera model and parameters:
 Make: Hasselblad
 Model: L1D-20c
 Width: 5472
 Height: 3648
 Focal: 28
 WhiteBalance: Manual
 ExposureMode: Auto Exposure
 ColoSpace: sRGB
 EV: -0.7
 MeteringMode: CenterWeightedAverage
 Camera Pitch: -90.00

- Survey informations:
 No Images: 187
 Median height: 70 meters
 Survey area: 4.03 hectares
 Survey from: 2022:09:11 15:18:37 to: 2022:09:11 15:26:13
"
description: This study was funded by the European Regional Development Fund (ERDF) within the programme Interreg V 2014-2020 through the project G2OI
DOI: 10.5281/zenodo.8432885
title: Images drone UAV, Aeroport, Mayotte - 20220911

description: "Jeu de données composé d'images de drone DJI Mavic 2 Pro UAV acquises sur le site de Aeroport, Mayotte à la date suivante : 20220911.

Dans le cadre de la collaboration entre le Projet G2OI et Mayotte FMR (Future Maore Reef), l'objectif de la mission vise à étudier l'implantation de récifs artificiels dans le lagon de Mayotte sur plusieurs sites. En espace aérien contrôlé, les vols ont été exécutés en regard de la réglmentation et en contact avec la tour de contrôle de l'aéroport de Mayotte. 


Le dépôt est composé des éléments suivants:
    - 00_: Planche d'aperçu des images
    - DCIM.zip: Images brutes issues du drone
    - GPS.zip: Geopackage contenant l'emprise du survol ainsi que la géolocalisation des images accompagnées de leurs miniatures dans la table d'attribut en base64
    - METADATA.zip: Métadonnées au format ISO19115, Rapports avec miniatures des images de drone (dossier tb) et statistiques de vols.

Arborescence d'origine:
└─ 20220911_MYT-aeroport_UAV-02_2
  └─ DCIM
  └─ GPS
  └─ METADATA
    └─ tb

Informations de survol:
Différentes hauteurs de vols, angles des transects et angles de caméra ont été utilisés dans le but d'obtenir des données de qualité en fonction des conditions météorologiques et marines.
- Camera model and parameters:
 Make: Hasselblad
 Model: L1D-20c
 Width: 5472
 Height: 3648
 Focal: 28
 WhiteBalance: Manual
 ExposureMode: Auto Exposure
 ColoSpace: sRGB
 EV: -0.7
 MeteringMode: CenterWeightedAverage
 Camera Pitch: -90.00

- Survey informations:
 No Images: 187
 Median height: 70 meters
 Survey area: 4.03 hectares
 Survey from: 2022:09:11 15:18:37 to: 2022:09:11 15:26:13

Les dépôts suivants comprennent les données traitées avec OpenDroneMap"
description: This study was funded by the European Regional Development Fund (ERDF) within the programme Interreg V 2014-2020 through the project G2OI