DOI: 10.5281/zenodo.15157085
title: TABLE 2 in Botryosphaeriaceae on palms-a new species of Neodeightonia, N. chamaeropicola, and new records from diseased foliage of ornamental palms in Portugal

description: TABLE 2. Collection details and GenBank accession numbers of taxa included in the phylogenetic analyses.
Taxon current nameTaxon previous name 1Culture 2Status 3GenBank accession number 4 ITS tef1 tub2Botryosphaeria agavesCBS 133992ETJX646791JX646856-CBS 141505KX306750MT592030-MFLUCC 10-0051JX646790JX646855-B. corticisATCC 22927DQ299247EU673291-CBS 119047ETDQ299245EU017539-CBS 119048DQ299246EU017540-B. dothideaCBS 110302AY259092AY573218-CBS 110484MT587330AY343350-CBS 115476ETAY236949AY236898-CBS 121769EU101303EU101348N/ACDP 1567OQ996237OR233674N/ACERC 2298KX278002KX278107-CGMCC 3.17723KT343254KU221233-GZCC 16-0013KX447675KX447678-MFLUCC 13-0202MT177925MT454011-MFLUCC 16-1304MT177920MT454006N/AMFLUCC 16-1312MT177923MT454009N/AB. fabicercianaCBS 127193THQ332197HQ332213-CMW 14009DQ316084MT592032-CMW 27121HQ332198HQ332214-B. kuwatsukaiCBS 135219ETKJ433388KJ433410N/ACGMCC 3.18007KX197074KX197094-CGMCC 3.18008KX197075KX197095-B. osmanthiGUCC 21433TOL854215OP650906-GUCC 21433.1OL854216OP650907-B. puerensisCSF6052TMT028569MT028735-B.qingyuanensisCERC 2946TKX278000KX278105-CERC 2947KX278001KX278106-B.ramosaCBS 122069TEU144055EU144070-CERC 1999KX277988KX278093-CERC 2001KX277989KX278094-B.salicicolaGUCC 21230TOL854218OP669379-GUCC 21230.1OL854219OP669380-B.scharifiiCBS 124703TJQ772020JQ772057N/AIRAN 1543CJQ772019JQ772056N/ADiplodia africanaCBS 120835TEF445343EF445382-STE-U 5946EF445344EF445383N/ADi. agrifoliaCBS 132777TJN693507JQ517317N/ACBS 132779JQ411411JQ512120-Di. fraxiniCBS 136010NTKF307700KF318747-CPC 34847MT587346MT592051-Di. malorumBL 127KF307717KF318764N/ACBS 124130ETGQ923865GQ923833-Di. mutilaCAP 062AY259093AY573219-CBS 121862KX464093KX464567-CBS 125.37MT587355MT592060-CBS 136014ETKJ361837KJ361829-CDP 0088OQ996219OR233679N/ACPC 29891MT587360MT592066-Di. neojuniperiCBS 138652TKM006431KM006462-CPC 22754KM006432KM006463N/ADi. olivarumCAP 257GQ923874GQ923842N/ACBS 121887TEU392302EU392279-Di. rosulataCBS 116470TEU430265EU430267-CBS 116472EU430266EU430268-Di. subglobosaCAP 302GQ923855GQ923823-CBS 124133TGQ923856GQ923824-Dothiorella acacicolaCBS 141295TKX228269KX228376N/ADo. acericolaHNXX 032KY385661KY393212-KUMCC 18-0137TMK359449MK361182N/ADo. alpinaGCMCC 3.18001TKX499645KX499651N/ADo. brevicollisCBS 130411TJQ239403JQ239390-CMW 36464MT587395MT592107-Do. citricolaCBS 124729TEU673323EU673290-CMW 36462MT587397MT592109-ICMP 16827EU673322EU673289-Do. diospyricolaCBS 145972TMT587398MT592110-Do. dulcispinaeCBS 130413TJQ239400JQ239387-CMW 25406EU101299EU101344-CMW 25407EU101300EU101345-Do. iranicaCBS 124722TKC898231KC898214-Do. lampangensisMFLUCC 18-0232TMK347758MK340869-Do. longicollisCBS 122068TEU144054EU144069-CMW 26164EU144052EU144067-CMW 26165EU144053EU144068-Do. magnoliaeCFCC 51563TKY111247KY213686N/ACFCC 51564KY111248KY213687N/ADo. mangifericolaCBS 124726MT587407MT592119N/ACBS 124727TKC898221KX464614N/ACMW 25389KF766227EU101335-Do. plurivoraCBS 124724TKC898225KC898208-Do. striataCBS 124731TEU673321EU673288-DAR 80992KJ573643KJ573640-ICMP 16819EU673320EU673287-Do. tectonaeMFLUCC 18-0382TKM396899KM409637-Do. thailandicaCBS 133991TJX646796JX646861-Do. uruguayensisCBS 124908EU080923EU863180-Do. vinea-gemmaeCPC 29689MT587417MT592129-DAR 81012TKJ573644KJ573641-Do. viticolaCBS 117007AY905556KX464623-CBS 117008AY905557AY905560-CBS 117009TAY905554AY905559-CDP 1010OQ996228OR233683N/ACDP 1381OQ996230OR233684N/ACDP 1513OQ996234OR233685N/ACDP 1813OQ996240OR233686N/ACDP 1815OQ996241OR233687N/ACMW 37930JX283732JX283745-CMW 37931JX283733JX283740-CMW 37933JX283735JX283743-CPC 33136MT587418MT592130-CPC 33257MT587419MT592131-DAR 80529HM009376HM800511-DAR 80531HM009378HM800513-STE-U 5048AY343373AY343336-Do. yunnanaCGMCC 3.17999TKX499643KX499649N/ACGMCC 3.18000KX499644KX499650N/ALasiodiplodia theobromaeCBS 164.96NTAY640255AY640258-L. tropicaCGMCC 3.18477TKY783454KY848616-Macrophomina phaseolinaCBS 205.47ETKF951622KF951997N/AM. pseudophaesolinaCPC 21417TKF951791KF952153-Neodeightonia chamaeropicolaCDP 1446TOQ996231OR233669N/ACDP 1447OQ996232OR233670N/ACDP 1512OQ996233OR233671N/ACDP 1566OQ996236OR233673N/ACMIB-151MN060978N/AN/ADP064BHQ443209N/AN/ANeod. licurensisCOAD1780TKP165429KP165430-Neod. microsporaMFLUCC 11-0483TKU940110N/AN/AMFLUCC 11-0504KU940111N/AN/ANeod. palmicolaMFLUCC 10-0822THQ199221N/AN/AMFLUCC 10-0823HQ199224N/AN/ANeod. planchoniaeMFLUCC 17-2427MK347755N/AN/ANeod. arengaeMFLUCC 19-9077MZ262519MZ268009N/ANeod. arengaeNCYUCC 19-0144MZ262520MZ268010N/ANeod. arengaeZHKUCC 21-0074MZ647513MZ669855N/ANeod. arengaeZHKUCC 21-0075MZ647514MZ669856N/ANeod. arengaeZHKUCC 21-0076MZ647515MZ669857N/ANeod. phoenicumAMNOL589157N/AN/ACBS 122528TKF766198EU673309-CBS 123168EU673339EU673308-CBS 169.34EU673338EU673307-CDP 0281OQ996220N/AN/ACDP 0284OQ996221N/AN/ACDP 0290OQ996222N/AN/ACDP 0593OQ996224N/AN/ACDP 0745OQ996225N/AN/ACDP 0771OQ996226OR233667N/ACDP 0774OQ996227OR233668N/AFK6JX456475N/AN/AMFLUCC 22-0061ON707690N/AN/AMycoMP1OM920990N/AN/APLM-667AMG321227MG309735N/APLM-886AMG321229MG309737N/APLM-903AMG321230MG309738N/ANeod. rattanicaMFLUCC 15-0313KX646358KX646361N/AMFLUCC 15-0712TKX646357KX646360N/ANeod. rattanicolaMFLUCC 15-319TKX646359KX646362N/ANeod. septataGZAAS 22-0068ON716185ON759744N/AMFLUCC 22-0004TON716184ON759743N/ANeod. sp.PLM-367MG321231MG309739N/APLM-610MG321232MG309740N/APLM-744AMG321233MG309741N/APLM-854AMG321234MG309742N/APLM-877AMG321235MG309743N/ANeod. subglobosaCBS 448.91TKF766199EU673306-MFLUCC 11-0388KU940114N/AN/AMFLUCC 11-0482KU940112N/AN/AMFLUCC 11-0607KU940113N/AN/AMFLUCC 22-0005ON716186ON759745N/ANeofusicoccum arbutiCBS 116131TAY819720KF531792KF531793CMW 13455AY693976AY693977KX464923Neof. australeCBS 110865AY343408KX464661KX464937CBS 112877AY343385AY343346MT592654CBS 125786MH863758MT592170MT592662CBS 130996MT587458MT592171MT592663CDP 0075OQ996218OR233666N/ACMW 6837TAY339262AY339270AY339254CPC 33052MT587473MT592186MT592678Neof. brasilienseCMM 1285JX513628JX513608KC794030CMM 1338TJX513630JX513610KC794031Neof. buxiCBS 116.75TKX464165KX464678N/AUPSC 1738KX464164KX464677KX464954Neof. cordaticolaCBS 123634TEU821898EU821868EU821838CMW 14056EU821903EU821873EU821843Neof. cryptoaustraleB012OQ176234OQ236715OQ181395B029OQ380731OQ401619OQ401621Neof. stellenboschianumCBS 110864AY343407AY343348KX465047Neof. stellenboschianumCBS 110866MT587518MT592242MT592734CBS 1122813TFJ752742FJ752713FJ752756Neof. stellenboschianumCBS 189.28MT587521MT592246MT592738CDP 1565OQ996235OR233672OR233690CDP 1968OQ996242OR233676OR233691Neof. stellenboschianumCMW 13986DQ316085MT592243MT592735CMW 20738PTFJ752740FJ752710FJ752754CMW 23786FJ752744FJ752714FJ752753CMW 42483KP860866KP860709KP860786Neof. stellenboschianumCPC 28950MT587522MT592247MT592739Neof. stellenboschianumCPC 35286MT587524MT592249MT592741Neof. eucalypticolaCBS 115679TAY615141AY615133AY615125CMW 6217AY615143AY615135AY615127Neof. eucalyptorumCBS 115791RAF283686AY236891AY236920CBS 145975MT587477MT592190MT592682Neof. grevilleaeCBS 129518TJF951137N/AN/ANeof. hellenicumCERC 1947TKP217053KP217061KP217069CERC 1948KP217054KP217062KP217070Neof. hongkongenseCERC 2967KX278050KX278155KX278259CERC 2973TKX278052KX278157KX278261Neof. illiciiCGMCC 3.18310TKY350149N/AKY350155CGMCC 3.18311KY350150KY817756KY350156Neof. kwambonambiensesCBS 115184AF452525FJ150711N/ACBS 123639TEU821900EU821870EU821840Neof. lumnitzeraeCMW 41228MT587480MT592193MT592685CMW 41469TKP860881KP860724KP860801Neof. luteumCBS 562.92TKX464170KX464690KX464968CDP 0033OQ996216OR233664N/ACDP 0038OQ996217OR233665N/ACDP 1568OQ996238OR233675N/ACDP 1969OQ996243OR233677N/ACDP 2026OQ996244OR233678N/ACMW 14071DQ316088MT592196MT592688CMW 41365NR_147360MT592206MT592698CPC 32247MT587485MT592199MT592691CPC 32482MT587494MT592209MT592701CPC 32647MT587496MT592211MT592703Neof. macroclavatumCBS 118223TDQ093196DQ093217DQ093206Neof. mangiferaeCBS 118531RAY615185DQ093221AY615172CBS 118532RAY615186DQ093220AY615173Neof. mediterraneumCBS 113089KX464199KX464727KX465014CBS 121718TGU251176GU251308GU251836Neof. microconidiumCBS 118821MT587497MT592212MT592704CERC 3497TKX278053KX278158KX278262Neof. nonquaesitumCBS 126655TGU251163GU251295GU251823PD 301GU251164GU251296GU251824Neof. occulatumCBS 128008TEU301030EU339509EU339472CBS 519.74MT587499MT592214MT592706Neof. parvumALG 1KJ657702KJ657715KX505915ATCC 58191TAY236943AY236888AY236917CBS 118832MT587501MT592216MT592708CBS 139672MT587446MT592156MT592646CDP 0382OQ996223OR233681OR233688CDP 1380OQ996229OR233680OR233689MFLUCC 15-0900KY856755KY856754N/ASTE-U 5049AY343474AY343365MT592643Neof. pennatisporumMUCC 510TEF591925EF591976EF591959Neof. pistaciaeCBS 595.76ITKX464163KX464676KX464953Neof. podocarpiCBS 115065MT587507MT592222MT592714CBS 131677TMT587508MT592223MT592715Neof. protearumCBS 113071FJ150700MT592231MT592723CBS 114176TAF452539KX464720KX465006Neof. rapaneaeCBS 145973TMT587511MT592226MT592718CPC 32578MT587512MT592227MT592719Neof. ribisCBS 115475TAY236935AY236877AY236906UPSC 3145MT587514MT592229MT592721Neof. sinenseCGMCC 3.18315TKY350148KY817755KY350154Neof. sinoeucalyptiCERC 2005TKX278061KX278166KX278270CERC 3415KX278063KX278168KX278272Neof. terminaliaeCBS 125263TGQ471802GQ471780KX465052CMW 26683GQ471804GQ471782KX465053Neof. ursorumCBS 122811TFJ752746FJ752709KX465056CMW 23790FJ752745FJ752708KX465057Neof. variabileCBS 143480TMH558608N/AMH569153CMW 37745MH558610MH576586MH569155Neof. viticlavatumCBS 112878TAY343381AY343342KX465058STE-U 5041AY343380AY343341KX465059Neof. vitifusiformeCBS 110887TAY343383AY343343KX465061STE-U 5050AY343382AY343344KX465008Sardiniella celtidisGZCC 19-0248MZ781427MZ852500N/AMFLUCC 17-0981TMF443249MF443248N/AS. ellipticaCGMCC 3.20349TMZ781429MZ852502N/AGZCC 19-0245MZ781431MZ852504N/AS. guizhouensisCGMCC 3.19222TMW886228MZ231048N/AGZCC 19-0094MW886229MZ231049N/AS. urbanaBL 180KX379677KX379678N/ABL 181KX379680KX379681N/ABL 182KX379683KX379684N/ACBS 141580TKX379674KX379675N/ACDP 1658OQ996239OR233682N/A
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1 Taxon previous name is noted if different from current name for taxa which were synonymized in the present study.
2 Acronyms of culture collections, ALG: Personal culture collection A. Berraf-Tebbal; AR: Collection of Systematic Mycology and Microbiology Laboratory; ATCC: American Type Culture Collection, Virginia, USA; BL: Personal number of B.T. Linaldeddu; CAP: Personal culture of A.J.L. Phillips; CBS: CBS-KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands; CDP: Culture Collection of D.S. Pereira, housed at the Lab Bugworkers | M&B-BioISI | Tec Labs – Innovation Centre, Faculty of Sciences, University of Lisbon, Lisbon, Portugal; CERC: Culture collection of China Eucalypt Research Centre, Chinese Academy of Forestry, ZhanJiang, GuangDong, China; CFCC: China Forestry Culture Collection Center, Beijing, China; CGMCC: China General Microbiological Culture Collection Center; CMIB: Coleções de Culturas Microbiológicas da Rede Paranaense (CMRP); CMM: Culture Collection of Phytopathogenic Fungi “Prof. Maria Menezes”, Universidade Federal Rural de Pernambuco, Recife, Brazil; CMW: Tree Patholgy Co-operative Program, Forestry and Agricultural Biotechnology Institute, University of Pretoria, South Africa; COAD: Colecao Octavio de Almeida Drumond, Universidade Federal de Viçosa, MG, Brazil; CPC: Working collection of P.W. Crous, housed at CBS; CSF: Culture Collection from Southern Forests, ZhanJiang, GuangDong Province, China; DAR: Plant Pathology Herbarium, Orange Agricultural Institute, Forest Road, Orange. NSW 2800, Australia; GUCC: Guizhou University Culture Collection; GZAAS, Guizhou Academic of Agriculture Sciences, Guizhou, China; GZCC: Guizhou Academy of Agricultural Sciences Culture Collection, GuiZhou, China; ICMP: International Collection of Microorganisms from Plants, Landcare Research, Aukland, New Zealand; IRAN: Iranian Fungal Culture Collection, Iranian Research Institute of Plant Protection, Iran; KUMCC: Culture Collection of Kunming Institute of Botany, Kunming, China; MFLUCC/MFLU: Mae Fah Luang University Culture Collection, Chiang Rai, Thailand; MUCC: Murdoch University Culture Collection, Murdoch, Australia; NCYUCC: National Chiayi University Culture Collection, Taiwan; PD: Culture collection, University of California, Davis, USA; STE-U: Culture collection of the Department of Plant Pathology, University of Stellenbosch, South Africa; UPSC: Uppsala University Culture Collection of Fungi, Botanical Museum University of Uppsala, Uppsala, Sweden; ZHKUCC: University of Agriculture and Engineering Culture Collection, China.
3 Status of the strains, ET: ex-epitype, IT: ex-isotype, NT: ex-neotype, PT: ex-paratype, R: representative, T: ex-type.
4 Newly generated sequences are in bold; N/A: sequences not available; –: sequences not used in the analyses; ITS: partial cluster of nrRNA genes, including the nuclear 5.8S rRNA gene and its flanking internal transcribed spacer regions ITS1 and ITS2; tef1: partial translation elongation factor 1-alpha gene; tub2: partial beta-tubulin gene.
description: Published as part of Pereira, Diana S. & Phillips, Alan J. L., 2023, Phytotaxa 627 (1) on pages 1921-1935, DOI: 10.11646/phytotaxa.627.1.1, http://zenodo.org/record/10216659