cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15454/qei1oo
title: Caractéristiques biologiques de 301 taxons observés dans la flore associée au semis direct sous couvert en région Bourgogne-Franche-Comté.

description: Pour ce jeu de données, les traits sont définis comme une caractéristique morphologique, physiologique ou phénologique d’une espèce mesurable à l’échelle d’un individu sans références faites à l’environnement ou à un autre niveau d’organisation. Les données contenues dans ce jeu de données ont été obtenues à partir de bases de données existantes. Trois cent un taxons (genres ou espèces) sont décrits par dix traits fonctionnels de réponse (response trait) : forme de vie de Raunkiaer, nombre de cotylédons, mécanisme de dispersion des semences, période de germination et de floraison, longévité des semences dans le sol, indice de lumière d’Ellenberg, poids moyen des semences, surface foliaire spécifique et teneur en matière sèche.
DOI: 10.15454/rmcztw
title: Data for Exploring the future of land use and food security: A new set of global scenarios

description: Input and output data of the quantitative assessment of the Agrimonde-Terra scenarios. Simulations have been conducted with the GlobAgri-AgT model. The aim of the Agrimonde-Terra foresight was to build global scenarios linking land use and food security, with special attention to overlooked aspects such as nutrition and health, in order to help explore what could be the future of the global food system. In this article, we seek to highlight how the resulting set of scenarios contributes to the debate on land use and food security and enlarges the range of possible futures of the global food system. We highlight four main contributions. Combining a scenario building method based on morphological analysis and quantitative simulations with a tractable and simple biomass balance model, the proposed approach improves transparency and coherence between scenarios’ narratives and quantitative assessment. Agrimonde-Terra scenarios comprise a wide range of alternative diets, with contrasted underlying nutritional and health issues, which accompany contrasted urbanization and rural transformation processes, both dimensions that are lacking in other sets of global scenarios. Agrimonde-Terra scenarios share some similarities with existing sets of global scenarios, notably the SSPs, but are most often less optimistic as regards agricultural land expansion up to 2050. Agrimonde-Terra scenarios enlarge the scope of possible futures by proposing two pathways uncommon in other sets of global scenarios. The first one invites future studies to re-open the debate on the possible reconnection, within supranational regional blocs, of the food industry to regional production. The second one calls for considering that a ‘perfect storm’, induced by climate change and an ecological crisis combined with social and economic crises, is still possible. Both scenarios should clearly be part of the debate as the current context of the COVID-19 pandemic shows.
DOI: 10.15454/qvcyrb
title: Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota

description: Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota built by binning co-abundant genes of the IGC catalog with MSPminer. This dataset is the same as the one published with the original paper except we updated the taxonomic annotation and phylogeny.
DOI: 10.15454/s486rr
title: Metagenomic analysis of virome cross-talk between cultivated Solanum lycopersicum and wild Solanum nigrum

description: We selected tomato (Solanum lycopersicum) and european black nightshade (Solanum nigrum) as a pair of related crop-weed species to study the diversity and potential flow of viral populations using high throughput sequencing (HTS) based metagenomics. A total of 20 libraries were prepared and sequenced on an Illumina HiSeq 3000 system at the GenoToul platform (INRA Toulouse, France).
DOI: 10.15454/s660lh
title: Milling itineraries for a collection of wood byproducts - Itineraries description, product granulometric characterization and associated kinetics

description: This data set contains milling itineraries and granulometric properties of the resulting powders obtained from a collection of by-products from woods (pine wood pellets, pine bark, pine sawdust, Douglas shavings, chesnut tree sawdust) representative of currently used lignocellulosic biomass. The data are gathered in four tables. Table 1 provides a precise description of milling itineraries associated with produced powder samples. Table 2 reports the granulometric characteristics of all produced powder samples. The kinetics of particle size reduction for a subset of produced powder samples are gathered in Table 3. In Table 1, a milling itinerary is described by a set of unit operations and associated with a unique numerical identifier (column Experience number). Each unit operation of a given itinerary is described on a separate line and associated with a unique numerical identifier (columns Experience number + Process step number). Numerical value associated with Process step number column indicates temporal order (e,g step 1 is before step 2). In case of parallel unit operations, a dot is used (e,g step 1.1 is parallel to step 1.2). The following information are reported: date; biomass nature and name (Biomass) ; processing operation type (Treatment); drying mode/moisture content (Treatment); biomass quantity; equipment name and type (Material); rotation speed; vibration frequency; mass of balls; sieving grid size (sieving size); treatment duration; temperature; output solid quantity (Output solid constituent quantity); output solid yield (Output solid constituent quantity), characterized sample product name (Sample Product1). In Table 2, are found the data concerning particles and powders characterization: characterized sample product name (Sample Product); biomass name and nature (Biomass); d50 calculation method; d50 in volume; d50 in number; d10 calculation method; d10 in volume; d10 in number; d90 calculation method; d90 in volume; d90 in number; span; specific surface area calculation method; specific surface area value. Table 3 has the same structure that Table 2 extended by an additional column (Sampling time) indicating the time at which a sample has been extracted during the milling for granulometric characterisation. Table 4 contains the whole set of full particle size distributions of all samples of Table 3. An additional file describres SOP (Standard Operating Procedure) parameter conditions used for granulometric characterization.
DOI: 10.15454/wakhnf
title: Projet ECOSFIX : Données extraites de la Base de données (NoSQL)

description: Le Projet ECOSFIX vise à structurer, homogénéiser, gérer et analyser des données permettant de déterminer comment un type de forêt affecte les traits physiques et fonctionnels des racines. http://data.plantnet-project.org/ecosfix/_design/datamanager/database.html#/db-manager
DOI: 10.15454/vczimr
title: Medicago truncatula temporal data from: Structure of multilocus genetic diversity in predominantly selfing populations

description: Microsatellite datasets of nine Medicago truncatula natural populations located in Spain, Corsica and in the south of France and analysed in "Structure of multilocus genetic diversity in predominantly selfing populations". The populations have been sampled two or three times each at 20 microsatellite loci.
DOI: 10.15454/ttebwl
title: Science for policy 2: Leaving land alone: soil functions under GAEC 9

description: This dataset is part of both Deliverable 4.3 and 5.3 and was produced by the WP4 team of the Landmark H2020 project. It contains the following shapefiles: PO2_GAEC9_05.shp PO2_GAEC9_10.shp Both shapefiles give an estimation of the change in performance on six soil functions across the EU in agricultural soils after implementation of the GAEC9 under the proposed CAP to reach 5% or 10% fallow land. This spatial variation is represented in change in z-scores compared to the current supply. The presence of fallow land is evaluated on a NUTS1 level. In the regions where the target of fallow land is not reached, productive arable land is converted into low-productive grassland to reach the 5% or 10% goal. This scenario allows us to evaluate the effect of GAEC5 on the different soil functions. The soil functions are then mapped by applying a number of crop specific Bayesian networks on a combination of spatial maps which describe soil properties, climate, adapted land use and land management on agricultural soils throughout the European Union. Z-scores are calculated from the spatial SF maps for each of the NUTS1 zones. The z-scores give the signed fractional number of standard deviations by which SF means for an environmental zone are above or below the mean value and allow us indicate which areas have a higher or lower soil function performance compared to the mean value. Z-scores from the current SF maps and scenario maps were then compared to each other to calculate the change in z-scores. This change in z-scores is given in the shapefiles and describes the relative change in soil function performance. Positive values indicate an improvement in soil functioning compared to the current situation, negative values a decrease.
DOI: 10.15454/w9jgoa
title: Données de réplication pour : PhytoDOM - Matériels Supplémentaires Rapport OFB 2020

description: Matériels Supplémentaires associés au rapport OFB 2020 pour le projet PhytoDOM Mat.Supp.1 : Liste DOM Mat.Supp.2 : Liste PHYTOBS homogénéisée AlgaeBase Mat.Supp.3 : Liste IPLAC Mat.Supp.4 : Taxonomie brute AlgaeBase Mat.Supp.5 : Listes ADN phytoplancton (.zip) Mat.Supp.6 : Protocole échantillonnage
DOI: 10.15454/wbzz5m
title: PPN-specific candidate effectors expressed in endophytic phases of M. incognita parasitic life cycle

description: Annotated list of M. incognita candidate effector proteins that fulfil these criteria: - the proteins are PPN-specific according to orhtofinder and return no significant hit over than in other PPN against the NCBI's nr. - the protein does not belong to a multigene family - the corresponding gene shows substantial and higher expression in endophytic phases - the protein is present in at least two other Meloidogyne species The annotated table in XLSX format shows the following informations in columns: 1. Protein / Gene acessions number 2. Presence of at least one effector-enriched MERCI motif in the 100 first amino acids 3. Gene expression values across four different life stages 4. Comparison of average expression in endophytic vs. exophytic stages. 5. Orthogroup of origin and distribution in other PPN species. A text version with tab-separated values is also available.
DOI: 10.15454/vc9ur5
title: Compilation of occurrence data for two psyllid species of the Cacopsylla pruni complex (Hemiptera: Psylloidea)

description: Plant diseases associated with psyllid vectors have spread rapidly and globally among commercially important cultures, causing great economic damage (e.g., on stone fruit trees, citrus, and potatoes). A better understanding of the potential range of the vector and host species is key to assess the potential risks for plant health under current and future climates. Here we focus on the two psyllid vectors of the Cacopsylla pruni complex able to transmit a bacterium ‘Candidatus Phytoplasma prunorum’, responsible for a disease of Prunus sp., European stone fruit yellows (ESFY). We have compiled our own non-published occurrence data with data collected through a systematic literature review and through GBIF to compose a dataset of 1975 records (with locality name, GPS coordinates, host plant, etc) with URL link to access directly and generally freely to the original information (e.g., PDF file of an article, manuscript or book, GBIF page, etc).
DOI: 10.57745/0o0ppm
title: LepiBats dataset

description: Lepibats dataset
DOI: 10.15468/dl.b4jqgu
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bonamia densiflora (Baker) Hallier fil."
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0100248-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b8yzc6
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "TaxonKey is Paliurus Mill."
 ]
}

 The dataset includes 67 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0312924-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tk2m9q
title: Occurrence Download

description: A dataset containing 2526 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sporobolus actinocladus (F.Muell.) F.Muell."
 ]
}

 The dataset includes 2526 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0139740-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q77vv4
title: Occurrence Download

description: A dataset containing 6059 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carex praecox Schreb.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "Year is greater than or equal to 1990",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 6059 records from 178 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163100-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9hag7a
title: Occurrence Download

description: A dataset containing 7543 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Brazil",
 "GadmGid is BRA",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cyanocorax cyanomelas (Vieillot, 1818)"
 ]
}

 The dataset includes 7543 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0100286-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.82658m
title: Occurrence Download

description: A dataset containing 403 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Coastal and Marine Species Database"
 ]
}

 The dataset includes 403 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0330015-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/ttgxvm
title: CardObs : Observations naturalistes issues de l'outil CardObs-Malacologie de la réserve de la Trinité, Guyane

description: Un inventaire de la faune des mollusques terrestres et aquatiques de la Réserve Naturelle de la Trinité a été effectué du 8 au 18 avril 2019. L’objectif était d’acquérir des connaissances sur cette faune inconnue, puisque la réserve n’avait jamais fait l’objet d’un inventaire malacologique.
DOI: 10.15468/dl.n4rs3v
title: Occurrence Download

description: A dataset containing 182 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sporobolus agrostoides Chiov."
 ]
}

 The dataset includes 182 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0139748-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8eqm2e
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tetracheilostoma bilineatum (Schlegel, 1839)"
 ]
}

 The dataset includes 55 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0293737-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ujk8zf
title: Occurrence Download

description: A dataset containing 447 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pongo abelii Lesson, 1827"
 ]
}

 The dataset includes 447 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0139752-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mp4bt8
title: Occurrence Download

description: A dataset containing 403 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Emoia sanfordi Schmidt & Burt, 1930"
 ]
}

 The dataset includes 403 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0293757-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/pvzzpr
title: Ensemble de données récoltées par le Département de la Gironde-Données opportunistes

description: Données récoltées dans le cadre de l'ABC de la CCM Montesquieu
DOI: 10.15468/dl.xr2kq3
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sporobolus bogotensis Swallen & García-Barr."
 ]
}

 The dataset includes 91 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0139764-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.75jbkd
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diploderma flaviceps (Barbour & Dunn, 1919)"
 ]
}

 The dataset includes 14 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0293734-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/gp4bdp
title: Inventaire en continu de la ZNIEFF 'Pelouses Calcaires D'auradou Et De Penne D'agenais' - 720020109-Observations faunistiques (inventaire) réalisées par le CEN Nouvelle-Aquitaine

description: Observations faunistiques (inventaire) réalisées par le CEN Nouvelle-Aquitaine. Il n'y a pas de protocole associé à ce jeu de donnée (observations réalisées in situ). Les taxons ciblés sont les odonates, rhopalocères et chiroptères mais tous les taxons faunistiques sont pris en compte dans l'inventaire.
DOI: 10.15468/dl.92pt8d
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Crenicichla cyanonotus Cope, 1870)"
 ]
}

 The dataset includes 18 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014356-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/csbccr
title: Echinoderms of Hispaniola Island

description: Project Hispabiota Marina. Museums and literature reviews about the biodiversity of echinoderms in the Hispaniola Island
DOI: 10.15468/dl.n59tc4
title: Occurrence Download

description: A dataset containing 1165 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasGeospatialIssue is false",
 "Country is New Zealand",
 "Modified is 2022-02"
 ]
}

 The dataset includes 1165 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0304554-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zy2xxs
title: Occurrence Download

description: A dataset containing 356 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Cnesmone Blume"
 ]
}

 The dataset includes 356 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008812-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fz6cpb
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Limnonectes liui (Yang, 1983)"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0304526-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/p8gcpe
title: Stable isotope ratios of C, N and S in Southern Ocean sea stars (1985-2017)

description: This dataset is a compilation of stable isotope ratios of C, N and S in tissues of 2456 sea stars sampled from 1985 to 2017 in the Southern Ocean (Antarctica and Subantarctic Islands). Stable isotope values were measured in the framework of Baptiste Le Bourg's PhD thesis at University of Liège, entitled “Trophic ecology of Southern Ocean sea stars: Influence of environmental drivers on trophic diversity”. Samples were provided by the University of Liège (Belgium), the Université Libre de Bruxelles (Belgium), the National Museum of Natural History (Paris, France) and the Institute of Oceanology of the Polish Academy of Sciences (Sopot, Poland). There could be duplicate records from collections of these institutes published on GBIF and OBIS. This work was supported by BELSPO through the vERSO and RECTO projects (contracts no. BR/132/A1/vERSO and BR/154/A1/RECTO). This dataset is published by SCAR-AntOBIS under the license CC-BY 4.0. Please follow the guidelines from the SCAR and IPY Data Policies (https://www.scar.org/excom-meetings/xxxi-scar-delegates-2010-buenos-aires-argentina/4563-scar-xxxi-ip04b-scar-data-policy/file/) when using the data. If you have any questions regarding this dataset, don't hesitate to contact us via the contact information provided in the metadata or via data-biodiversity-aq@naturalsciences.be. Issues with dataset can be reported at https://github.com/biodiversity-aq/data-publication/
DOI: 10.15468/yjjrfc
title: Evaluation de la qualité du bocage par le biais de suivis du Muscardin-Inventaire Muscardin

description: Trois sites en Creuse ont été équipés de nest-tubes (180 au total) pour tenter d’inventorier le muscardin et de caractériser ses habitats préférentiels dans la région.
DOI: 10.15468/dl.xcywq8
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dasineura piceae (Felt, 1926)",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is United States of America",
 "Country is United States",
 "Country is United States of America",
 "Country is Canada",
 "Continent is North America"
 ]
 }
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0368433-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.