cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.nk98sf7tt
title: Strong isolation by distance among local populations of an endangered butterfly species (Euphydryas aurinia)

description: The marsh fritillary (Euphydryas aurinia) is a critically endangered
 butterfly species in Denmark known to be particularly vulnerable to
 habitat fragmentation due to its poor dispersal capacity. We identified
 and genotyped 318 novel SNP loci across 273 individuals obtained from 10
 small and fragmented populations in Denmark using a
 genotyping-by-sequencing (GBS) approach to investigate its population
 genetic structure. Our results showed clear genetic substructuring and
 highly significant population differentiation based on genetic divergence
 (FST) among the 10 populations. The populations clustered in three overall
 clusters and due to further substructuring among these, it was possible to
 clearly distinguish six clusters in total. We found highly significant
 deviations from Hardy-Weinberg equilibrium due to heterozygote deficiency
 within every population investigated which indicates substructuring and/or
 inbreeding (due to mating among closely related individuals). The
 stringent filtering procedure that we have applied to our genotype quality
 could have overestimated the heterozygote deficiency and the degree of
 substructuring of our clusters but is allowing relative comparisons of the
 genetic parameters among clusters. Genetic divergence increased
 significantly with geographic distance, suggesting limited gene flow at
 spatial scales comparable to the dispersal distance of individual
 butterflies and strong isolation by distance. Altogether, our results
 clearly indicate that the marsh fritillary populations are genetically
 isolated. Further, our results highlight that the relevant spatial scale
 for conservation of rare, low mobile species may be smaller than
 previously anticipated.
DOI: 10.5061/dryad.2rbnzs7nw
title: Hybridization underlies localized trait evolution in cavefish

description: A rapidly growing body of work has demonstrated that introgressive
 hybridization often drives patterns of phenotypic evolution and may play
 an integral role in the evolutionary processes of local adaptation and
 speciation. Indeed, several of studies have shown that behavioral
 variation can result from introgressive hybridization (e.g., song in
 hybrid Darwin’s finches, mate choice in hybrid baboons, defensive behavior
 in hybrid honey bees), providing new substrate for selection to act upon.
  A powerful model system for investigating the genetic and
 evolutionary basis of trait development and behavior is the
 Mexican tetra, Astyanax mexicanus. Cave populations have repeatedly
 evolved numerous traits including eye loss, sleep loss, and albinism. Of
 the 30 caves inhabited by A. mexicanus, the Chica cave is unique because
 it contains several pool microenvironments inhabited by putative hybrids
 between surface and cave populations, providing an opportunity to
 investigate hybridization and its impact on complex trait evolution. We
 demonstrate that hybridization between cave and surface populations
 contributes to highly localized variation in pigmentation, eye
 development, and sleep, traits that are thought to be associated with cave
 evolution. Our findings suggest that hybridization drives highly-localized
 behavioral and morphological evolution. Lastly, our analyses uncovered a
 compelling example of convergent evolution in a core circadian clock gene
 in multiple independent cavefish lineages and burrowing mammals,
 suggesting a shared genetic mechanism underlying circadian disruption in
 subterranean vertebrates. Together, our results provide insight into the
 evolutionary mechanisms that generate adaptive genetic
 variation. 
description: This dataset includes read counts and sequencing coverage info
 for Astyanax mexicanus samples included in population genetic analyses in
 Moran et al. 2021 ("Hybridization underlies localized trait evolution
 in cavefish").
DOI: 10.5061/dryad.8sf7m0cp3
title: Antibacterial and anatomical defences in an oil contaminated, vulnerable seaduck

description: Oil-spills have killed thousands of birds during the last 100 years, but
 non-lethal effects of oil-spills on birds remain poorly studied. We
 measured phenotype characters in 279 eiders Somateria mollissima of which
 13.6% were oiled. We tested the hypotheses that (1) the morphology of
 eiders does not change due to oil contamination; (2) the anatomy of organs
 reflects the physiological reaction to contamination e.g. increase in
 metabolic demand, increase in food intake and counteracting toxic effects
 of oil; (3) large locomotion apparatus that facilitates locomotion
 increase the risk of getting oiled; and (4) individual eiders with a
 higher production of secretions from the uropygial grand were more likely
 to have oil on their plumage. We tested whether 19 characters differed
 between oiled and non-oiled individuals, showing a consistent pattern. The
 final model retained seven predictor variables showing relationships
 between eiders contaminated with oil and food consumption, flight and
 diving abilities. We tested whether these effects were due to differences
 in body condition, liver mass, empty gizzard mass or other characters that
 could have been affected by impaired flight and diving ability. There was
 no evidence of such negative impact of oiling on eiders. We found that
 significant exposure to oil was associated with increased diversity of
 antibacterial defence. Oiled eiders did not constitute a random sample,
 and superior diving ability as reflected by large foot area were at a
 selective disadvantage during oil spills. Thus, specific characteristics
 predispose eiders to oiling, with an adaptation to swimming, diving and
 flying being traded against the costs of oiling. In contrast, individuals
 with a high degree of physiological plasticity may experience an advantage
 because their uropygial secretions counteract the effects of oil
 contamination. --
description: We sampled 819 eiders <em>Somateria mollissima</em>
 during 2014-2019 in Danish waters of which 279 were whole specimens and
 540 were wings sent in by hunters to the Danish Wing Survey. We measured
 19 phenotype characters. In total 817 eiders were inspected for oil and of
 these 111 specimens (13.6%) had oil on their plumage. The uropygial grands
 were removed from 119 eiders and uropygial secretions were extracted
 to analyze anti-bacterial activity.
DOI: 10.5061/dryad.z612jm6cg
title: Data from: A generalist bird exhibits site-dependent resource selection

description: Quantifying resource selection (an organism’s disproportionate use of
 available resources) is essential to infer habitat requirements of a
 species, develop management recommendations, predict species responses to
 changing conditions, and improve our understanding of the processes that
 underlie ecological patterns. Because study sites, even within the same
 region, can differ in both the amount and the arrangement of
 cover types, our objective was to determine whether proximal sites can
 yield markedly different resource selection results for a generalist bird,
 northern bobwhite (Colinus virginianus). We used five years of telemetry
 locations and newly developed land cover data at two, geographically
 distinct but relatively close sites in the south central semi-arid
 prairies of North America. We fit a series of generalized linear mixed
 models and used an information-theoretic model comparison approach to
 identify and compare resource selection patterns at each site. We
 determined that the importance of different cover types to northern
 bobwhite is site-dependent on relatively similar and nearby sites.
 Specifically, whether bobwhite selected for shrub cover and whether they
 strongly avoided trees, depended on the study site in focus. Additionally,
 the spatial scale of selection was nearly an order of magnitude
 different between the cover types. Our study demonstrates that—even for
 one of the most intensively studied species in the world—we may
 oversimplify resource selection by using a single study site approach.
 Managing the tradeoffs between practical, generalized conclusions and
 precise but complex conclusions is one of the central challenges in
 applied ecology. However, we caution against setting recommendations for
 broad extents based on information gathered at small extents, even for a
 generalist species at adjacent sites. Before extrapolating information to
 areas beyond the data collected, managers should account for local
 differences in the availability, arrangement, and scaling of resources.
DOI: 10.25349/d9zg7q
title: Data on Authorship Gender in Ranked, Unranked, and Interdisciplinary Philosophy Journals (JSTOR Database, 1900-2010)

description: This data includes information on authorship gender in Leiter
 Ranked, Unranked, and Interdisciplinary Philosophy Journals between 1900
 & 2010.
description: For information on how this
 data was initially collected, see West, J. D., Jacquet, J., King, M.
 M., Correll, S.J., and Bergstrom, C.T. (2013) “The Role of Gender in
 Scholarly Authorship.” <i>PLoS ONE</i> 8(7).
 DOI:10.1371/journal.pone.0066212
DOI: 10.57841/casdc.0007107
title: 机器人科学家的化学智能指标化学反应模板数据集
DOI: 10.5061/dryad.ht76hdrgb
title: Data from: Novel and disappearing climates in the global surface ocean from 1800 to 2100

description: Marine ecosystems are experiencing unprecedented warming and acidification
 caused by anthropogenic carbon dioxide. For the global sea surface, we
 quantified the degree that present climates are disappearing and novel
 climates (without recent analogs) are emerging, spanning from 1800 through
 different emission scenarios to 2100. We quantified the sea surface
 environment based on model estimates of carbonate chemistry and
 temperature. Between 1800 and 2000, no gridpoints on the ocean surface
 were estimated to have experienced an extreme degree of global
 disappearance or novelty. In other words, the majority of environmental
 shifts since 1800 were not novel, which is consistent with evidence that
 marine species have been able to track shifting environments via
 dispersal. However, between 2000 and 2100 under Representative
 Concentrations Pathway (RCP) 4.5 and 8.5 projections, 10–82% of the
 surface ocean is estimated to experience an extreme degree of global
 novelty. Additionally, 35–95% of the surface ocean is estimated to
 experience an extreme degree of global disappearance. These upward
 estimates of climate novelty and disappearance are larger than those
 predicted for terrestrial systems. Without mitigation, many species will
 face rapidly disappearing or novel climates that cannot be outpaced by
 dispersal and may require evolutionary adaptation to keep pace.
DOI: 10.5061/dryad.tht76hf0c
title: Dataset for RSOS-211108

description: The tomography of participants' right eyes measuring by optical OCT
 and rotating Scheimpflug imaging (OCULUS Pentacam). A custom-built MATLAB
 code for automatic segmentation of corneal OCT images.
DOI: 10.5061/dryad.dz08kprxx
title: Phenotypic rates of change evolutionary and ecological dataset (PROCEED) version 5.0

description: Wild populations must continuously respond to environmental changes or
 they risk extinction. Those responses can be measured as phenotypic rates
 of change which can allow us to predict contemporary adaptive
 responses, some of which are evolutionary. About two decades ago, a
 database of phenotypic rates of change in wild populations was
 compiled. Since then, researchers have used (and expanded) this
 database to examine phenotypic responses to specific types of
 human disturbance. Here, we updatedthe database adding 5675 new
 estimates of phenotypic changes. Using this newer version of the database,
 now containing 7338 estimates of phenotypic change, we revisit the
 conclusions of four published articles. We then synthesize the expanded
 dataset to compare rates of change across different types of human
 disturbance. Analyses of this expanded database suggests that: I.
 a small absolute difference in rates of change exists between human
 disturbed and natural populations, II. harvesting by humans results in
 higher rates of change than other types of disturbances, III. introduced
 populations have increased rates of change, and IV. body size does not
 increase through time. Thus, findings from earlier analyses have largely
 held-up in analyses of our new database that encompass a much
 larger breadth of species, traits, and human disturbances. Lastly, we use
 new analyses to explore how various types of human disturbances
 affect rates of phenotypic change, and we call for this database to serve
 as a stepping stone for further analyses to understand patterns of
 contemporary phenotypic change.
DOI: 10.5061/dryad.gqnk98sng
title: Resource limitation, intragroup aggression, and brain neuropeptide expression in a social wasp

description: 1. Nourishment can have profound effects on social behavior, including
 aggressive interactions between individuals. However, how nutritional
 resource availability and limitation affects intraspecific aggression
 remains somewhat contested. The prevailing theoretical and empirical
 understanding is that when nutritional resources are limited,
 inter-individual competition and aggression will increase. However,
 findings from several social animals suggest that limited nutrition can
 lead to increased cooperation, including by a reduction in
 inter-individual aggression. 2. We suggest that in social insect colonies,
 where nourishment is often important in determining differences between
 the reproductive and non-reproductive worker behavioral castes, the link
 between an individual’s nourishment and their future reproductive
 potential may be a key missing element of models that predict how
 nutritional resource availability affects inter-individual aggression. 3.
 We investigated how nourishment influenced intra-colony aggression and its
 molecular correlates in colonies of the social paper wasp Polistes
 fuscatus, which workers that maintain flexible reproductive potential as
 adults. We subjected colonies to either a high or low feeding treatment,
 and examined subsequent effects on behavior, physiology, and brain gene
 expression. 4. We found that nutritional restriction reduced aggressive
 interactions, suggesting increased social cohesion when resources are
 limiting. Thus, individual worker paper wasps appear to have the capacity
 to adjust their behavior (e.g., reduced aggression) in response to
 nutritional stress, investing nutritional resources in the colony when
 resources are limiting, and in the self when resources are abundant. 5.
 Differential brain gene expression results implicate two well-known
 neuropeptides associated with aggression and/or nutrient signaling across
 taxa, Tachykinin and Neuropeptide-F, as possible mediators of
 nutritionally-dependent intra-colony aggression. This adds to a growing
 understanding that deeply conserved genes associated with core, conserved
 behaviors such as feeding and aggression in solitary insects can play a
 role in the regulation of social plasticity in more highly social species.
DOI: 10.5061/dryad.pzgmsbcmn
title: Two new hybrid populations expand the swordtail hybridization model system

description: Natural hybridization events provide unique windows into the barriers that
 keep species apart as well as the consequences of their breakdown. Here we
 characterize hybrid populations formed between the northern swordtail fish
 Xiphophorus cortezi and X. birchmanni from collection sites on two rivers.
 We use simulations and new genetic reference panels to develop sensitive
 and accurate local ancestry calling in this novel system. Strikingly, we
 find that hybrid populations on both rivers consist of two genetically
 distinct subpopulations: a cluster of pure X. birchmanni individuals and
 one of phenotypically intermediate hybrids that derive ~85-90% of their
 genome from X. cortezi. Simulations suggest that initial hybridization
 occurred ~150 generations ago at both sites, with little evidence for
 contemporary gene flow between subpopulations. This population structure
 is consistent with strong assortative mating between individuals of
 similar ancestry. The patterns of population structure uncovered here
 mirror those seen in hybridization between X. birchmanni and its sister
 species, X. malinche, indicating an important role for assortative mating
 in the evolution of hybrid populations. Future comparisons will provide a
 window into the shared mechanisms driving the outcomes of hybridization
 not only among independent hybridization events between the same species
 but also across distinct species pairs.
DOI: 10.15468/dl.k2p49y
title: Occurrence Download

description: A dataset containing 384 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selenaspidus articulatus"
 ]
}

 The dataset includes 384 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002900-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.h9w0vt4j4
title: Targeted sequencing of the five major carbapenemases identified in clinical isolates

description: This study aimed to evaluate the diagnostic performance of Carba 5 and its
 impact on the turn-around-time in a clinical microbiology laboratory.
 Carba 5 was retrospectively evaluated using 78 carbapenemase producers and
 23 non-carbapenemase producers confirmed by PCR and sequencing. The
 performance and time required for carbapenemase identification were
 prospectively evaluated using 47 carbapenem resistant Enterobacteriaceae
 isolates, and the results were compared to those obtained using Xpert
 Carba-R (Cepheid, Sunnyvale, CA, USA).
DOI: 10.5061/dryad.tht76hf0d
title: Data to accompany: Seedling responses to soil moisture amount versus pulse frequency in a dominant semi-arid shrub

description: The timing, frequency and quantity of rainfall is rapidly changing in
 dryland regions, leading to profound alterations to dryland plant
 communities. Understanding dryland plant responses to future rainfall
 scenarios is crucial for implementing proactive management strategies,
 particularly in light of intensive changes to land cover concurrent with
 climate change. One such change is woody plant encroachment, an increasing
 abundance of woody plant species in areas formerly dominated by grasslands
 or savannas. The continued encroachment of P. velutina will depend, in
 part, on seedling capacity to establish and thrive under future climate
 conditions. Seedling performance is primarily impacted by soil moisture
 conditions that are governed by precipitation amount (quantity) and
 frequency. We hypothesized that H1) seedling performance would be enhanced
 by both greater soil moisture and greater pulse frequency, such that
 seedlings with similar mean soil moisture would perform best under high
 moisture pulse frequency. Alternatively, H2) mean soil moisture would have
 greater influence than pulse frequency, such that at a given pulse
 frequency would have little influence on seedling performance. The
 hypotheses were tested by growing 256 P. velutina seedlings under two
 distinct soil moisture treatments, each of which was maintained by two
 different pulse frequency treatments. Contrary to H1, mean soil moisture
 had far greater impact than pulse frequency on seedling growth,
 photosynthetic gas exchange, leaf chemistry and biomass allocation. These
 results indicate that P. velutina seedling establishment may be more
 responsive to rainfall amount than rainfall frequency.
description: <em>Prosopis velutina </em>seedlings were grown in a
 greenhouse under four different watering treatments (2 soil moisture
 levels x 2 pulse frequencies). Plants were measured peridocally for gas
 exchange, height, and number of leaves. Above and belowground biomass was
 determined at the end of hte experiment. Additional
 details about the experimental design are available from Ashley
 Davis's MS thesis at Arizona State University
 (https://repository.asu.edu/items/57030) and the article that accompanies
 this dataset.
description: Please see metadata in the sheet titled
 "metadata". Additional details about the
 experimental design are available from Ashley Davis's MS thesis at
 Arizona State University (https://repository.asu.edu/items/57030) and the
 article that accompanies this dataset.
DOI: 10.5061/dryad.0p2ngf21z
title: Do I stay or do I go? Shifts in perch use by lizards during twilight suggests anticipatory behaviour

description: Anticipatory behaviour is the expectation of a near-future event based on
 information processed in the past and influences an animal’s tactical
 decisions, particularly when there are significant fitness consequences.
 The grass lizard (Takydromus viridipunctatus) perches on blades of grass
 at night which likely reduces the probability of predation by terrestrial
 predators such as snakes, rodents, and shrews. During twilight (starting
 30 mins before sunrise) they move from above the grass to within grass
 clumps and this is thought to afford the lizard protection while reducing
 detection by avian predators. Here, we examined how lizards shift their
 behaviour as a function of visual detectability to their primary predator,
 the cattle egret (Bubulcus ibis). We show that the lizards shift from
 their perch site during twilight at the earliest time at which egrets
 depart communal roosts. At the same time, visual modelling shows a
 dramatic increase in detectability of the lizards to the visual system of
 egrets. Therefore, anticipatory behaviour in response to environmental
 cues acts to reduce predation risk as lizards become more conspicuous and
 predators become more active. Grass lizard anticipatory behaviour appears
 to be finely tuned by natural selection to adjust to temporal changes in
 predation risk.
description: 01 Behavioural pattern.xlsx - raw data for the lizard behaviour
 patterns. We scored behaviours as follows: 1) eyes open; 2) head movement:
 head-turning or any body movements less than 1× snout-vent-length (SVL);
 and 3) body movement: movements more than 1× SVL from the original
 position. We standardized the time of a behaviour by relating it to the
 sunrise time of that date (i.e., how many minutes before or after
 sunrise), which was available from the Central Weather Bureau,
 Taiwan. 02 Ambient light.xlsx - raw data of ambient
 light condition. During the twilight period, down-welling light (surface
 power density, μWatt cm<sup>-2</sup>
 s<sup>-1</sup>) was measured every minute using a power meter
 (Newport 1935-C, California USA) with a photodiode detector (Newport
 918D-SL-OD1R) at the exact moment that behavioural observations were made.
 The sample rate was 0.1 ms, with 10,000 samples averaged to produce a
 mean. The power meter was set to detect wavelengths of 416/478/542/607 nm,
 which indicated the maximum absorbance of the 4 cones: VS/SWS/MWS/LWS in
 v-type eyes of birds, including cattle egrets (Hart, 2001; Borges et al.,
 2015; Endler & Mielke, 2005). 03
 Reflectance.xlsx - raw data of spectral reflectance. We measured the
 spectral reflectance of live lizards and grasses in both the breeding (10
 males and 7 females) and non-breeding (10 males and 10 females) seasons
 using a reflectance probe (Ocean Optics QR600-7-SR-125F) and a portable
 spectrometer (Ocean Optics Flame UV-VIS model).