cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6066608.v2
title: DNN-Based Assistant in Laparoscopic Computer-Aided Palpation

description: This repository includes the dataset analyzed in the study entitled that "DNN-Based Assistant in Laparoscopic Computer-Aided Palpation" by Tomohiro Fukuda, Yoshihiro Tanaka, Michitaka Fujiwara, and Akihito Sano.
DOI: 10.6084/m9.figshare.936992.v6
title: Original 1200 dpi plates for Wilf 2012 Dacrycarpus puertae paper in American Journal of Botany.

description: Original resolution, 1200 dpi versions of the most important color plates published in: Wilf, P. 2012. Rainforest conifers of Eocene Patagonia: attached cones and foliage of the extant southeast-Asian and Australasian genus <em>Dacrycarpus</em> (Podocarpaceae). American Journal of Botany, v. 99, p. 562-584. http://www.amjbot.org/content/99/3/562.abstract doi:10.3732/ajb.1100367
DOI: 10.17632/996zpx2ypt
title: Micropollutant contamination of water and soil for two biofiltration system treating road runoff

description: This data includes micropollutant concentrations evaluated in untreated road runoff, water drained from a biofiltration swale, water drained from a vegetative filter strip and the filter media from the biofiltration swale produced on the Compans study site as a part of the Roulépur research project. Sampling and analytical methods are detailed in Field performance of two biofiltration systems treating micropollutants from road runoff and Retention and transport processes of particulate and dissolved micropollutants in stormwater biofilters treating road runoff. Basic characteristics of sampled rain events are provided in "Rain event characteristics," while locations of soil sample collection within the biofiltration swale are provided in the "Location of BFS soil samples."
DOI: 10.6084/m9.figshare.7429109.v1
title: caregiver burden, time of caring and dependence

description: The sample is 135 informal caregivers, some of them take care more than one dependent person. Data was collected between 2014-2016.Sociodemographic characteristics of caregivers and dependent persons, the level of cooperation between dependent individual and caregiver, information about the caregiver's own health: perceived health status and the presence of psychological or psychiatric disease and health status of the dependent persons was collected.Caregivers also filled out at home a diary where they write the exact amount of minutes devote to performing each activity of the daily life of behalf of the dependent person. Activities were indicated how ofter they occurred, and those minutes were later averaged to derive a per-day measure. The minutes allocated to housework were adjusted for household size (using the OECD's equivalence scale).The short version of the ZBI which comprises 7 questions [range 7-35]. Scoring 17 or more are viewed as being "severely" burdened. DEP-6D index was filled in. The scores can be as low as -0.84 and as high as 1 (no dependence).A mean ZBI score was obtained for each caregiver-dependent pair. IT was also estimated three logistic regression models to analyse the association between the variables just described and the likelihood of being severely burdened and three linear regression models to measure the association between these mean ZBI scores and the characteristics of the corresponding dependent person and caregiver. The dependent variable was ZBI and the explanatory variables were the caregiver's and dependent's characteristics. Sociodemographic data and health status of the caregiver were always included. Dependence was measured by accounting for the minutes of care or using the DEP-6D index. The dimension of DEP-6D were transformed into binary variables to introduce in some models.It was approved by the Committee on Ethics of Clinical Research in Galicia (code 2012/381).<br>
DOI: 10.21233/yn1d-4f38
title: ONTSU100 pollen surface sample dataset

description: Raw data for the ONTSU100 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.25381/cput.22280818.v1
title: Design and Assessment of Net Zero Energy for Industrial Buildings

description: 2021FEBEREC-STD-061
DOI: 10.15468/dl.8cqvye
title: Occurrence Download

description: A dataset containing 16970 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eclectus roratus (Statius Muller, 1776)"
 ]
}

 The dataset includes 16970 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009179-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/h5r52gzwpn
title: normative reference score of 6 x 10 m shuttle run test among the collegiate athletes.

description: The study aims to establish a normative reference score of a 6 x 10 m shuttle run test among collegiate athletes.
The 6 x 10 m shuttle run test is a widely used measure of agility, speed, and anaerobic performance among athletes. Agility is a crucial component of athletic performance, particularly among collegiate athletes who compete at high levels of intensity and skill across various sports. Understanding the significance of agility in this population is essential for optimizing training strategies, injury prevention, and overall athletic success
DOI: 10.6084/m9.figshare.26860564.v2
title: Genome assembly and annotation of <i>Lobelia seguinii</i>

description: This dataset corresponds to the data in the manuscript: A chromosome-level genome of<i> Lobelia seguinii</i> provides insights into the evolution of Campanulaceae and the lobeline biosynthesis, which was submitted to Genomics.This dataset includes the chromosome-level assembly (fasta) and annotations (cds, pep, gff3). Genome sequencing was carried out for <i>Lobelia seguinii</i> using HiFi, Illumina, and Hi-C sequencing on fresh leaves that were frozen with liquid nitrogen. After DNA extraction, HiFi sequencing was performed using the PacBio Sequel II platform, while Illumina and Hi-C sequencing were conducted on the NovaSeq 6000 platform. The HiFi sequencing reads were assembled using Hifiasm (v0.16.1-r375), and the Hi-C sequencing reads were mapped to the assembly using Juicer (v1.6). After obtaining the genome assembly file (<b><i>Lobelia_seguinii_genome.fa</i></b>), ab initio, homology-based, and transcriptome-based approaches were used for the annotation of the <i>L. seguinii</i> genome (<b><i>Lobelia_seguinii_gene.cds</i></b>, <b><i>Lobelia_seguinii_gene.pep</i></b>, <b><i>Lobelia_seguinii_genome.gff3</i></b>).
DOI: 10.6084/m9.figshare.28706801.v1
title: Count_ASV_PA_ASVoi.xlsx

description: ASV-level counts and prevalence used in Naumann et al.
DOI: 10.17632/ffgbz8gx4f
title: The Effect of Benchmarking on Management Practices and Equid Welfare on Prince Edward Island, Canada

description: Data for manuscript submitted to Animal Open Source 2024: The Effect of Benchmarking on Management Practices and Equid Welfare on Prince Edward Island, Canada
DOI: 10.17632/fypbvr25g2
title: HOMOGENEIZAÇÃO COMPUTACIONAL DO COMPORTAMENTO ELÁSTICO DE COMPÓSITOS REFORÇADOS COM FIBRAS DISTRIBUÍDAS DE FORMA ALEATÓRIA

description: Anais do II Simpósio Gaúcho de Engenharia Aeroespacial e Mecânica, UFSM
Santa Maria, RS, 24 a 26 de outubro de 2023
DOI: 10.17632/5yh7gffpbs
title: Benjamin Strain PhD thesis supplementary data

description: Supplementary datasets utilised as part of Benjamin Strain's PhD thesis.

iCHO2441 is available as an .xml file

iCHO1766 was obtained from the Bigg models database (King et al., 2016), while iCHO2291 was obtained via the BioModels database (Malik-Sheriff et al., 2020). The expanded iCHO2441 GeM was constructed by coupling the secretory machinery presented within the iCHO2048 (Gutierrez et al., 2020a) to the recently published updated iCHO2291 (Yeo et al., 2020a). This was achieved by adapting the Jupyter Notebooks developed by Gutierrez et al. (2020) to use the updated iCHO2291 as a base model to which secretory reactions may be added. In brief, information of each secreted product including amino acid composition, presence of a signal peptide, number of disulphide bonds, number of core N-linked glycans, and molecular weight were fed to the notebook and used to add the appropriate secretory pathway reactions to the model (Chapter 4 dataset- Table S1). For intracellular flux prediction, a custom model was generated for each secreted product using product composition data. For auxotrophy and gene essentiality predictions, a generic IgG structure was used to add secretory reactions to the model (Chapter 4 dataset- Table S1). As per the recommendation by Hart et al., genes with transformed values less than -3 were classed as ‘not expressed/ negative confidence’ (class -1). Genes with transformed values between -3 and -1.5 were classed as ‘low confidence expressed’ (class 1). Genes with transformed values between -1.5 and 0 were classed as ‘medium confidence expressed’ (class 2). Genes with transformed values greater than 0 were classed as ‘expressed/high confidence’ (class 3). These classifications were mapped to reactions within iCHO2441 using the method described above, where unclassified reactions were given a class of 0. Reconstructions were generated per experiment using the CORDA function for python which took iCHO2441 constrained with experimental uptakes (Chapter 4 dataset- Table S2) as a base model and the gene confidence classifications as inputs.

Further details on the structure of iCHO2441 are highlighted in 'iCHO2441 information'.

Host cell protein knockout improvements provides full % improvements of HCP knockout predicted by a cell line specific GeM
DOI: 10.17632/68n8sfcggh
title: Data for: Detailed tephrochronology and composition of major Holocene eruptions from Avachinsky, Kozelsky, and Koryaksky volcanoes in Kamchatka

description: Database on the Holocene tephra compositions of Avachinsky, Koryaksky and Kozelsky volcanoes (Kamchatka). Bulk tephra major and trace element contents, glass major and trace element compositions and results of the Bayesian framework age calibration procedure. OxCal CQL code of Bayesian age model.
DOI: 10.17632/psjph9z8gr
title: Data for: Linking the Online Destination Brand Experience and Brand Credibility with Tourists’ Behavioral Intentions Toward a Destination

description: Dataset used in the study 2a and 2b.
DOI: 10.17632/bdd9n6pfw7
title: Harmine inhibits ovarian cancer migration and invasion and epithelial-mesenchymal transition (EMT) by inhibiting HDAC7 to restore RECK expression

description: 论文原始数据
DOI: 10.4121/14578944.v1
title: Dataset underlying the MSc thesis 'Creating impactful standards: assessing the importance of RRI criteria on standards development'

description: Contains:Interview recordingsInterview transcriptsQuestionnaire FormBWM analyses BWM Results<br>Please also consult the README file for further information.
DOI: 10.6084/m9.figshare.28644662.v1
title: <b>Using Mendelian randomization to establish a genetic neuron-immune-cancer axis</b>

description: This study focuses on establishing a genetic neuron-immune-cancer axis by investigating the causal relationships among neurons, cancers, and potential immune cell mediators.
DOI: 10.6084/m9.figshare.6820193.v1
title: Dataset - Sun exposure

description: This dataset is product of a cross-sectional study in the Pimentel beach, Peru. Pimentel is one of the main beaches in the northern Peru and belongs to Lambayeque, which is considered a semi-warm and tropical-dry region, with temperatures that exceed 30°C during summer.<br>In 2018, we surveyed all the beachgoers from 8 a.m. to 4 p.m. and from March 5 to March 19 (Peruvian summer). No sample was calculated. We surveyed all Spanish-speaking adults aged 18 to 59 who were in the study place within the specified time range.
DOI: 10.17632/pjr7b8sbf8
title: "Impaired local intrinsic immunity to SARS-CoV-2 infection in severe COVID-19". Ziegler et al.

description: SARS-CoV-2 infection can cause severe respiratory COVID-19. However, many individuals present with isolated upper respiratory symptoms, suggesting potential to constrain viral pathology to the nasopharynx. Which cells are the primary targets of SARS-CoV-2 and how infection influences the respiratory epithelium remains incompletely understood. We performed scRNA-seq on nasopharyngeal swabs from 58 healthy and COVID-19 participants. During COVID-19, we observe expansion of secretory, loss of ciliated, and epithelial cell repopulation via deuterosomal expansion. In mild/moderate COVID-19, epithelial cells express anti-viral/interferon-responsive genes, while cells in severe COVID-19 have muted anti-viral responses despite equivalent viral loads. SARS-CoV-2 RNA+ host-target cells are highly heterogenous, including developing ciliated, interferon-responsive ciliated, AZGP1high goblet, and KRT13+ “hillock”-like cells, and we identify genes likely involved in susceptibility, resistance, or response to infection. We define protective and detrimental responses to SARS-CoV-2, the direct viral targets of infection, and suggest that failed epithelial anti-viral immunity may underlie severe COVID-19.
DOI: 10.17632/r2s92p5frz
title: SEM-EDS raw data. Ceramic casting moulds from the Late Bronze and Early Iron Age, and for clay raw material

description: SEM-EDS data related to the petrographic analysis of casting moulds from the Late Bronze and Early Iron Age settlement. In addition, data for clay raw material from the vicinity of the settlement examined using SEM-EDS for comparison.
DOI: 10.17632/52gwfxwpbd
title: Simulation of ADS-B data considering integrity parameters

description: Data obtained from the simulation of a computational model of air traffic control considering two aircraft in cruise. For each collection, a minimum of 10,000 maneuvers were verified, in which metrics are obtained to check for possible route conflicts in order to carry out the safety assessment of the maneuvers.
Recorded data for the assignment of the discipline PCS5787 (Data Science) of PPGEE.
DOI: 10.17632/s7v36z6nj9
title: Aerosol Box for Intubation of Patients with covid 19

description: Diseño del estudio
Se consideró diseño observacional con una fase cuasi experimental y otra experimental. Para el cuasi experimental se compararon los tiempos promedios en los procedimientos de intubación realizando cuatro intentos por participante (Video Laringoscopio + Caja, Laringoscopio Macintosh + Caja, Video Laringoscopio y Laringoscopio Macintosh) para determinar el tiempo en cada uno de los procedimientos dentro del mismo participante.  Para la fase experimental, se contemplaron dos grupos de comparación con los primeros intentos que realizaban los participantes, esto para determinar la eficacia en tiempo y numero de intentos para intubación con el uso de la caja de aerosoles.  Ver ilustración 1.
Población y muestra
Para el cálculo de la muestra se consideró de referencia el estudio desarrollado por Kílim en 2019. (8) donde se identificó un valor medio para el laringoscopio Macintosh de 15.7±6.33 y en el video laringoscopio de 32.3 ± 12.9 segundos, con estos valores el tamaño de muestra requerido seria de 8 participantes en cada grupo (calculo en STATA), pero es de aclarar que con el uso de la Caja de aerosoles más las gafas y la careta era probable que estos tiempos aumentaran en un 25% aproximadamente.  Por lo tanto, se tomó como base para el cálculo del tamaño de la muestra el número de la población total de Anestesiólogos, residentes de segundo y tercer año de anestesia en una institución de salud de cuarto nivel en Bucaramanga, estimado en 40 profesionales, tratando de lograr una muestra representativa, es decir mayor al 75% (30) (9), siendo considerado la participación de como mínimo 30 participantes que generarían 120 procedimientos 
Con criterios de inclusión: medico anestesiólogo, residente de anestesia segundo o tercer año, experiencia en atención en salud en servicio de cirugía, UCI o urgencias por más de 2 años.  Con criterios de exclusión el no firmar el consentimiento para grabar video y estar en posturno nocturno.
Procedimientos
El procedimiento de intubación fue realizado por anestesiólogos titulados y residentes de segundo y tercer año, quienes afirmaron haber realizado más de 80 intubaciones exitosas en su práctica clínica; los procedimientos se ejecutaron en las instalaciones del Laboratorio de Simulación Clínica de la Facultad de Salud de la Universidad Industrial de Santander desde septiembre a octubre de 2020.  Los participantes recibían una explicación por parte del equipo investigador, orientada al uso de elementos de protección personal completo y lavado de manos; posteriormente se permitía una intubación previa de prueba con el uso de los dispositivos de vía aérea a utilizar. El maniquí de intubación (Simulador de intubación traqueal 3B Scientific) se programó para presentar desaturación de pulso a los 10 segundos de iniciar el procedimiento (alarma), no se realizó reflejo de tos.

Continua en Steps to reproduce
DOI: 10.17632/xmgbv8ng79
title: Morphodynamic evolution of paraglacial spit complexes on a tide-influenced Arctic delta (Dicksonfjorden, Svalbard)

description: This directory contains the following drone-derived datasets collected between 2016 and 2019 at the head of Dicksonfjorden, Svalbard. The dataset indicates that the spit morphodynamics on the tidal flats at the head of Dicksonfjorden display a variability in time and space. Georeferenced orthophotomosacis were collected annually and processed to produce digital elevation models (DEMs) using Pix4D. Sediment volume changes between years were calculated by substracting the two DEMs corresponding each year (e.g., DoD_2019_2018_D.tif is the difference between DEM_2019_D.tif and DEM_2018_D.tif). Files in Figure 6, Figure 8, Figure 11, Figure 13 folders include DEM and DoD of spits analyzed in the study. Due to large file size for original tiff files (typically greater than 1 GB), we uploaded tiff files with reduced resolution (10 cm). The resolution of the original tiff files is less than 2 cm. Despite the reduced file resolution, there is no significant increase in root mean square errors for DoD analysis. The original tiff files are available on request. DRONE_DERIVED DATASETS Figure 6 _DEM and DoD of Spit 0 (upfjord area) - DEM_spit_0_2016.tif (Figure 6A), DEM_spit_0_2017.tif (Figure 6B), DEM_spit_0_2018.tif (Figure 6C), DEM_spit_0_2019.tif (Figure 6D), DoD_2018_2017_spit_0.tif (Figure 9E), DoD_2019_2018_spit_0.tif (Figure 9F), DoD_2019_2017_spit_0.tif (Figure 9G). Figure 8 _DEM of spits 1-5 (downfjord area) - DEM_spits_1-5.tif (Figure 8A), DEM_spits_1-3_2016.tif (Figure 8B), DEM_spits_1-3_2017.tif (Figure 8C), DEM_spits_1-3_2018.tif (Figure 8D), DEM_spits_1-3_2019.tif (Figure 8E), DEM_spits_4-5_2016.tif (Figure 8F), DEM_spits_4-5_2017.tif (Figure 8G), DEM_spits_4-5_2018.tif (Figure 8H), DEM_spits_4-5_2019.tif (Figure 8I). Figure 11_DoD of spits 1-5 (downfjord area) - DoD_2017_2016_spits_1-3.tif (Figure 11A), DoD_2018_2017_spits_1-3.tif (Figure 11B), DoD_2019_2018_spits_1-3.tif (Figure 11C), DoD_2019_2016_spits_1-3.tif (Figure 11D), DoD_2017_2016_spits_4-5.tif (Figure 11E), DoD_2018_2017_spits_4-5.tif (Figure 11F), DoD_2019_2018_spits_4-5.tif (Figure 11G), DoD_2019_2016_spits_4-5.tif (Figure 11H). Figure 13_DEM and DoD of cliff - DEM_cliff_2018.tif (Figure 13A), DEM_cliff_2019_JUL_2019.tif (Figure 13B), DEM_cliff_2019_AUG_2019.tif (Figure 13C), DoD_2019_JUL_2018_cliff.tif (Figure 13D), DoD_2019_AUG_2018_cliff.tif (Figure 13E).
DOI: 10.17632/yr5tyyk8ds
title: The Distributed No-Idle Flowshop Scheduling Problem with Due Windows Dataset

description: "The Distributed No-Idle Flowshop Scheduling Problem with Due Windows (DNIFSPDW)" addresses an extension of the Distributed Permutation Flowshop Scheduling Problem with No-Idle and Due Window constraints. The objective of DNIFSPDW is to determine the optimal sequence of job assignments to factories and the sequence in which they should be performed in each factory. This optimal sequence should ensure the minimum total weighted earliness and tardiness (TWET) penalties while also taking into account the due windows.
The enclosed document comprises four distinct files: Small, Large, Readme, and Supplementary Material. Within the Small and Large files, you will find the data that was developed and utilized for assessing the problem of distributed no-idle flowshop scheduling with due windows. The Readme file provides a comprehensive account of the contents of both the Small and Large files, including a detailed description of the data that is contained within them. The Supplementary Material Excel file contains all instances, along with the best complete solutions found, and their objective value.
DOI: 10.6084/m9.figshare.28229120.v3
title: Supplementary data for Shoctor et al 2025

description: Bioplex raw data obtained on 11-17-21.ROC curves obtained from active vs inactive LN data.Optimal cutoff figures (active LN vs HC) were generated using the cutpointr package in R. These figures supplement Table 3.
DOI: 10.17632/jtc4b2cz7n
title: Brazil Transmission Network Dataset

description: This dataset is made available by the Independent System Operator of Brazilian Transmission Networks (Operador Nacional do Sistema - ONS) and has been modified to run the simulations in the paper: "Energy storage as a transmission asset – assessing the multiple uses of a utility-scale BESS in Brazil". ANAREDE/ANATEM (CEPEL) software is used to run the simulation files.
DOI: 10.6084/m9.figshare.19422119.v1
title: Repeatmasker Table Custom Part 2

description: We annotated repeats in assemblies through two rounds of annotation with RepeatMasker4.1.0 (Smit et al. 2020), the first round used custom repeat libraries generated by RepeatModeler2 for each respective assembly and with search engine “ncbi” and option -xsmall. We then converted the softmasked assembly resulting from the first RepeatMasker round to a hardmasked assembly using the lc2n.py script (https://github.com/PdomGenomeProject/repeat-masking), and re-ran RepeatMasker on the hard-masked assembly with RepeatMasker’s internal arthropod repeat library and species “Arthropoda”. We then merged RepeatMasker output tables from both runs to summarize the abundance of RE categories.<br><br><br><i>Authors: John S. Sproul, Scott Hotaling, Jacqueline Heckenhauer, Ashlyn Powell, Amanda M. Larracuente, Joanna L. Kelley, Steffen U. Pauls, and Paul B. Frandsen</i>
DOI: 10.6084/m9.figshare.23613915.v1
title: cannulation.sav

description: cannulation under ultrasound_guided