cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5946502.v1
title: Development of Novel Bio-medical Imaging System for Monitoring/Screening of Cancers based on Quantitative Margin Detection between Healthy and Malignant Biological Cells/Tissues

description: The project will be focus on cellular imaging by DHM to identify various diseases and to monitor the living cells with addition of anti-disease drugs to cell cultural medium by characterization and studying the parameters of interest of the infected and non-infected cells like change in their physical thickness, index of refraction, quantifying the morphological changes etc. For example, cellular volume changes play an important role in many processes associated with the normal cell activity as well as various diseases. Imaging of mostly transparent microscopic biological specimens presents a special challenge. Existing techniques such as Zernike phase-contrast microscopy and differential interference contrast microscopy do not offer direct quantitative evaluation of the phase information. In digital holography, however, the phase information is directly available from the calculated optical field. DH-QPM has been used to monitor the morphological changes during trypsinization, hypo-osmotic, and apoptosis processes and research is still being carried out in order to expand this field. However, a very few investigations have been carried out to study the drug-induced dynamic changes of a single cell's cytoskeleton.
DOI: 10.6084/m9.figshare.5946496
title: Data Accessibility: Agricultural adapters from the vineyard landscape impact native oak woodland birds

description: Data accessibility<br>
DOI: 10.17632/mykkx4gygy.2
title: REFMC Catalogue

description: This focal mechanism catalogue (REFMC) was compiled by Mircea Radulian, Andrei Bălă and Dragoș Toma-Dănilă from the National Institute for Earth Physics (INFP), Romania (http://www.infp.ro/) and comprises of earthquakes in Romania, in the 1929 - 2012 period, for which we were able to compute or retrieve focal mechanism parameters. If you use this catalogue in your work, beside the Mendeley Data citations please provide references to one of the following articles: 1. Radulian M., Bala A., Popescu E., Toma-Danila D. (2018) Earthquake mechanism and characterization of seismogenic zones in south-eastern part of Romania. Annals of Geophysics, 61(1), SE108. 2. Radulian M., Bala A., Ardeleanu L., Toma-Danila D., Petrescu L., Popescu E. (2019) Revised catalogue of earthquake mechanisms for the events occurred in Romania until the end of twentieth century: REFMC. Acta Geodaetica et Geophysica 54(1):3-18.
DOI: 10.6084/m9.figshare.5946496.v1
title: Data Accessibility: Agricultural adapters from the vineyard landscape impact native oak woodland birds

description: Data accessibility<br>
DOI: 10.17632/mrhb67pzp6.1
title: RAW DATA - New Limits For Stability of Supercapacitor Electrode Material Based on Graphene Derivative

description: A full dataset for publication labelled as: New Limits For Stability of Supercapacitor Electrode Material Based on Graphene Derivative
DOI: 10.6084/m9.figshare.5946478
title: SQUARE - Synthetic test case

description: Contains a square moving from the origin along the y axis. This is for testing purposes only.
DOI: 10.17632/f2bnnnm5zc.3
title: Box Suite Recommendation

description: This data was used to select box suites for a hypothetical e-commerce retailer based on a set of 5,284 candidate boxes, stored in boxes.csv, and a set of 15,000 shipments, stored in shipments.csv. Each shipment in shipments.csv is comprised of items selected from a set of 2,324 candidate items stored in items.csv. Each item is assumed to be a 3D rectangular carton with integral outer dimensions, so that foldable items are excluded. No two items have the same sorted outer dimensions. Moreover, none of the items have special packing constraints, such as having to be height-oriented or bottom-resting. Each shipment is comprised of 1 to 8 unique items, where each unique item has quantity 1 to 8 such that there are no more than 8 total cartons in the shipment. Each candidate box occupies a row in boxes.csv comprised of a unique integral box ID and three integral inner dimensions sorted in nonincreasing order. Each candidate item occupies a row in items.csv comprised of a unique integral item ID and three integral outer dimensions sorted in nonincreasing order. Each row in shipments.csv represents all or part of a shipment and is comprised of a unique integral shipment ID, an item's integral ID, the item's quantity, and the item's outer dimensions sorted in nonincreasing order. All the items in a shipment are assigned the same unique integral shipment ID and therefore can be grouped together based on it. For additional details about the contents of these data files and how they were used, refer to the arXiv preprint: https://arxiv.org/pdf/2004.11533.pdf
DOI: 10.6084/m9.figshare.5946472
title: SQL Dump of the database

description: Contains tracks data and metadata in SQL. Can be installed in a local MySQL database for querying.
DOI: 10.17632/5sxhn6hn6g.1
title: Evaluation of the fragility of pivotal trials used to support FDA approval for plaque psoriasis: Supplementary Figures and Tables

description: Supplementary Tables 1- 4, Supplementary Figures 1- 3
DOI: 10.6084/m9.figshare.5946469
title: Geomorphological processes of a Mediterranean urbanized beach (Sardinia, Gulf of Cagliari)

description: In this study, we present a comprehensive map of a microtidal wave-dominated beach system based on an interdisciplinary sea–land approach and with the purpose of supporting a sustainable and successful beach management. The study area is located in a highly urbanized/industrialized coastal sector of the W side of Cagliari Gulf (S Sardinia, W Mediterranean). In the Main Map (1:15,000 scale), static and dynamic features of the beach system and adjacent inner shelf are divided into thematic sections, including geomorphological elements, bathymetry, sedimentological distribution, benthic habitat (mainly <i>Posidonia oceanica</i> meadow), hydrodynamics and anthropogenic features. The map constitutes an example of multidisciplinary benchmark to allow for long-term planning and management of this highly urbanized beach system. It is able to provide a substantial scientific support to policy-makers towards environmental restoration and sustainable development.
DOI: 10.6084/m9.figshare.5946469.v1
title: Geomorphological processes of a Mediterranean urbanized beach (Sardinia, Gulf of Cagliari)

description: In this study, we present a comprehensive map of a microtidal wave-dominated beach system based on an interdisciplinary sea–land approach and with the purpose of supporting a sustainable and successful beach management. The study area is located in a highly urbanized/industrialized coastal sector of the W side of Cagliari Gulf (S Sardinia, W Mediterranean). In the Main Map (1:15,000 scale), static and dynamic features of the beach system and adjacent inner shelf are divided into thematic sections, including geomorphological elements, bathymetry, sedimentological distribution, benthic habitat (mainly <i>Posidonia oceanica</i> meadow), hydrodynamics and anthropogenic features. The map constitutes an example of multidisciplinary benchmark to allow for long-term planning and management of this highly urbanized beach system. It is able to provide a substantial scientific support to policy-makers towards environmental restoration and sustainable development.
DOI: 10.6084/m9.figshare.5946466
title: The pulse of the cycling city: visualising Madrid bike share system GPS routes and cycling flow

description: With the aim of shifting towards a more sustainable urban transport model, cycling mobility is being promoted in many cities and, in consequence, Bike Share Systems have been the focus of attention in an increasing number of studies over the past years. However, we know very little about the impact of these BSS in cities beyond the station level. What paths do cyclists follow? What are the most important urban arteries in terms of cycling flow? These are important questions to be addressed in order to implement policies and infrastructure where they are really needed. The main goal of this study is to visualise the cycling flow derived from Madrid BSS activity, obtained by processing over 250,000 GPS routes, and to provide an analysis of how this flow is distributed across the urban street network at different moments. We explore the diverse levels of use over the course of the day, and during the weekdays, weekends or holidays, as well as the different cycling patterns of frequent and occasional users.
DOI: 10.6084/m9.figshare.5946466.v2
title: The pulse of the cycling city: visualising Madrid bike share system GPS routes and cycling flow

description: With the aim of shifting towards a more sustainable urban transport model, cycling mobility is being promoted in many cities and, in consequence, Bike Share Systems have been the focus of attention in an increasing number of studies over the past years. However, we know very little about the impact of these BSS in cities beyond the station level. What paths do cyclists follow? What are the most important urban arteries in terms of cycling flow? These are important questions to be addressed in order to implement policies and infrastructure where they are really needed. The main goal of this study is to visualise the cycling flow derived from Madrid BSS activity, obtained by processing over 250,000 GPS routes, and to provide an analysis of how this flow is distributed across the urban street network at different moments. We explore the diverse levels of use over the course of the day, and during the weekdays, weekends or holidays, as well as the different cycling patterns of frequent and occasional users.
DOI: 10.6084/m9.figshare.5946466.v1
title: The pulse of the cycling city: visualising Madrid bike share system GPS routes and cycling flow

description: With the aim of shifting towards a more sustainable urban transport model, cycling mobility is being promoted in many cities and, in consequence, Bike Share Systems have been the focus of attention in an increasing number of studies over the past years. However, we know very little about the impact of these BSS in cities beyond the station level. What paths do cyclists follow? What are the most important urban arteries in terms of cycling flow? These are important questions to be addressed in order to implement policies and infrastructure where they are really needed. The main goal of this study is to visualise the cycling flow derived from Madrid BSS activity, obtained by processing over 250,000 GPS routes, and to provide an analysis of how this flow is distributed across the urban street network at different moments. We explore the diverse levels of use over the course of the day, and during the weekdays, weekends or holidays, as well as the different cycling patterns of frequent and occasional users.
DOI: 10.6084/m9.figshare.5946463
title: Buck Island - Covariate Stack

description: This collection of layers is a generated set of covariates produced by the ArcGIS extension BTM. The study area is Buck Island in the USVI.<br>
DOI: 10.17632/nmg9kh33sv.1
title: Thrombotic complications with direct oral anticoagulants in dermatologic surgery - Supplement

description: Primary and secondary outcomes as defined by standardized criteria.
DOI: 10.17632/nxvdzybwhf.1
title: Illuminating host-mycobacterial interactions with genome-wide CRISPR knockout and CRISPRi screens

description: The data deposited here contains genome-wide CRISPR knockout and CRISPRi screen data, including the positive hits, the negative hits, and non-targeting controls.
DOI: 10.17632/6wrtv5fgmf.1
title: Structured Versus Unstructured Questions for Formative Assessment in Physiology: A comparative study among Phase 1 MBBS students.

description: Medical education has opened up to accept many changing concepts in the field of education. Physiology question papers in our university so far have been open ended and not structured ones. Answers for open-ended questions are also a subject to bias during evaluation. This also has a greatly influenced their study pattern and also their performance in the exams. Objectives: 1.To assess of performance of Phase 1 MBBS students with structured questions to conventional questions in formative assessment. 2. To compare perception of Phase 1 MBBS students towards structured questions versus conventional questions in formative assessment. Methodology: Six formative assessments were done on Phase 1 MBBS students. Only those students present on the day of exam were considered. They were divided into 2 groups, one group received structured questions and the other received unstructured questions for the assessments. Each of the assessment was of one hour duration and carried 40 marks. Perception was taken at the end for both the formats of assessments. Results: The performance is compared by Independent t test. Overall mean marks scored by students with structured questions is 14.29 ±5.57 and with unstructured questions is 14.643 ±6.07. Similar performance is seen in all the six assessments and there is no significant difference in the marks scored by the students. A significant number of the student disagreed that structured questions helped score better. Conclusion: This study shows that there is no difference in performance of students with respect to structured or unstructured questions for formative assessment. Keywords: Structured questions, unstructured questions, formative assessment.
DOI: 10.17632/tp7fkkxk44.1
title: Invadopodia oscillation data

description: This is the experimental data for the paper "Recursive Feedback Between Matrix Dissipation and Chemo-mechanical Signaling Drives Oscillatory Growth of Cancer Cell Invadopodia"
DOI: 10.6084/m9.figshare.5946400
title: CSV Tracking Ground Truth

description: Tracking ground truth for each video in CSV format row 1: header (video name, dx, dy, dz, dt) row 2: channel visibility (ch0, ch1, ch2, ch3, ch4) row 3 - end: tracks (id_track, x, y, z, time)
DOI: 10.6084/m9.figshare.5946400.v1
title: CSV Tracking Ground Truth

description: Tracking ground truth for each video in CSV format row 1: header (video name, dx, dy, dz, dt) row 2: channel visibility (ch0, ch1, ch2, ch3, ch4) row 3 - end: tracks (id_track, x, y, z, time)
DOI: 10.17632/2w4st83pch.1
title: Langmuir and Hill model fitting to Pb(II), Cd(II) and Zn(II) sorption by five plant-based biochars

description: This file contains the raw data and the script for analysing the sorption capacities of five plant-based biochars for Cd(II), Zn(II) and Pb(II). Sorption capacity was measured using a constant quantity (1.25 mg.L-1) of biochar. Metal solutions were prepared in the range commonly present in the soil pore water of contaminated soils: from 0.05 to 10 mg.L-1 for Cd(II) and Zn(II) and from 0.5 to 50 mg.L-1 for Pb(II). As the biochar did not reach its maximum sorption capacity within that range additional concentrations up to 50 mg.L-1 were used for Cd(II) and Zn(II) and up to 85 mg.L-1 for Pb(II). Sorption experiments were carried out at an initial pH 5 for Pb (II) sorption, pH 6.5 for Cd(II) and pH 7.5 for Zn(II). The metal adsorption experiments were performed using a batch equilibration technique in triplicates. Stock solutions (1000 mg.L-1) of Zn(II), Cd(II), and Pb(II) were prepared in deionized water from Zn(NO3)2.6H2O, Cd(NO3)2.4H2O and Pb(NO3)2 (GR grade, Fisher Scientific, USA). The experiments were conducted in 50 mL polyethylene centrifuge tubes, the mixture was agitated at 120 rpm on a reciprocating shaker at 22 ⁰C ± 2 ⁰C. Replicate tubes for each biochar were destructively sampled, and filtered using 0.45 µm syringe filters. The filtrates were acidified with 1% (v/v) HNO3 (Fisher, TraceMetalTM grade) and Cd(II), Pb(II) and Zn(II) concentrations determined by ICP-MS (PerkinElmer, Sciex Elan DRCII). The experimental data was fit to Langmuir and Hill sorption isotherm models.
DOI: 10.17632/cr75b3gcf7.2
title: Fourier Series Blood Pressure

description: test
DOI: 10.6084/m9.figshare.5946391.v2
title: Identification of new benzamide inhibitor against <i>α</i>-subunit of tryptophan synthase from <i>Mycobacterium tuberculosis</i> through structure-based virtual screening, anti-tuberculosis activity and molecular dynamics simulations

description: Multi-drug-resistant tuberculosis and extensively drug-resistant tuberculosis has emerged as global health threat, causing millions of deaths worldwide. Identification of new drug candidates for tuberculosis (TB) by targeting novel and less explored protein targets will be invaluable for antituberculosis drug discovery. We performed structure-based virtual screening of eMolecules database against a homology model of relatively unexplored protein target: the <i>α</i>-subunit of tryptophan synthase (<i>α</i>-TRPS) from <i>Mycobacterium tuberculosis</i> essential for bacterial survival. Based on physiochemical properties analysis and molecular docking, the seven candidate compounds were selected and evaluated through whole cell-based activity against the H37Rv strain of <i>M. tuberculosis</i>. A new Benzamide inhibitor against <i>α</i>-subunit of tryptophan synthase (<i>α</i>-TRPS) from <i>M. tuberculosis</i> has been identified causing 100% growth inhibition at 25 μg/ml and visible bactericidal activity at 6 μg/ml. This benzamide inhibitor displayed a good predicted binding score (−48.24 kcal/mol) with the <i>α</i>-TRPS binding pocket and has logP value (2.95) comparable to Rifampicin. Further refinement of docking results and evaluation of inhibitor-protein complex stability were investigated through Molecular dynamic (MD) simulations studies. Following MD simulations, Root mean square deviation, Root mean square fluctuation and secondary structure analysis confirmed that protein did not unfold and ligand stayed inside the active pocket of protein during the explored time scale. This identified benzamide inhibitor against the <i>α</i>-subunit of TRPS from <i>M. tuberculosis</i> could be considered as candidate for drug discovery against TB and will be further evaluated for enzyme-based inhibition in future studies.
DOI: 10.17632/mjf4cvpks7.1
title: Availability and Quality of Patient Decision Aids for Dermatologic Conditions - supplemental material

description: Supplemental material for the paper: Availability and Quality of Patient Decision Aids for Dermatologic Conditions (J Am Acad Dermatol. 2020)
DOI: 10.17632/3stbbjdpr3.2
title: Solid Nitrogen Indentation Data at Triton Surface Conditions

description: This research was completed to support the Triton Hopper, a proposed NASA probe. Triton, a moon of Neptune, is thought to be a captured Kuiper belt object. The surface of Triton is observed to be primarily solidified nitrogen between 30K and 40K. Mechanical property date in this range data are limited to three known sources. Of interest to the Triton Hopper team are confined compression tests. To accomplish this a cryogenic flat punch indentation apparatus was developed. Samples were formed from 99.999% pure nitrogen gas which was liquified and cooled to solid via the system cryocooler. Force and displacement data of the solid nitrogen indentation were recorded at a fixed timestep. Runs without sample were recorded to allow removal of system hysteresis in post processing. All raw data and processing files are included, as well as the resultant plots. Further information can be obtained from the Data in Brief article entitled “Solid Nitrogen Indentation Data at Triton Surface Conditions.”
DOI: 10.6084/m9.figshare.5946373
title: LC-MS/MS data for Zhang et al. NCB paper

description: Data deposited here include different type of RNA modifications examined by LC-MS/MS (liquid chromatography–tandem mass spectrometry). Different types of RNA modifications in sperm RNA fractions (15-25nt, 30-40nt, 40-100nt and &gt;100 nt) extracted from F0 Dnmt2+/+ and Dnmt2-/- male mice under ND (normal diet) and HFD (High-fat diet) are processed for LC-MS/MS analysis.
DOI: 10.6084/m9.figshare.5946355
title: Additional file 9: of Taxa-function robustness in microbial communities

description: Table S3. Extended definitions of variables used in gene distribution features and list of gene distribution feature names. (XLSX 48Â kb)
DOI: 10.6084/m9.figshare.5946355.v1
title: Additional file 9: of Taxa-function robustness in microbial communities

description: Table S3. Extended definitions of variables used in gene distribution features and list of gene distribution feature names. (XLSX 48Â kb)
DOI: 10.17632/85gt9bwsjx.1
title: Climatological Teleconnections with Wind Energy in a Midcontinental Region Dataset

description: Data and scripts used for the paper "Climatological Teleconnections with Wind Energy in a Midcontinental Region" submitted to the American Meteorological Society (AMS) in 2020. R script makes use of each csv file. The goal of this study was to assess the relationship between synoptic regimes, teleconnections and external forcing on wind energy in the Upper Midwest. The script converts wind speeds to energy output, completes a multiple linear regression and yields several figures from the paper. Feel free to contact the author at Cobur018@umn.edu with any questions.
DOI: 10.6084/m9.figshare.5946346
title: Additional file 6: of Taxa-function robustness in microbial communities

description: Table S2. Median attenuation of pathways by environment. (XLSX 25Â kb)
DOI: 10.17632/pvp6x89znm.1
title: Moral dilemma of PAS

description: This work focuses on the ethical dilemma involving whether to defend children and obey the law when a judge determines that a parent should deliver the child to the other parent although the parent is aware that the child is being abused by the other parent, which could not be determined by the justice system. A study was conducted based on the Milgram Experiment regarding obedience to authority. The participants comprised 480 adult mothers who had not experienced having had custody of their children revoked by the justice system. An ad hoc questionnaire was created to gather socio-demographic data to present a fictitious situation extracted from real legal cases in which a mother’s custody of a child (a girl) was revoked, and the SCL-90-R scale. The results demonstrate how women who are separated from their children display the same behavior that would be displayed by any mother defending her children. Milgram’s paradigm of Obedience to Authority (OTA) would not work, and the results are more consistent with the so-called Relationship Condition. Taking children away from their mothers causes serious psychological damage and unscientific theories should not be used to address child abuse.
DOI: 10.6084/m9.figshare.5946346.v1
title: Additional file 6: of Taxa-function robustness in microbial communities

description: Table S2. Median attenuation of pathways by environment. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.5946340
title: Additional file 5: of Taxa-function robustness in microbial communities

description: Table S1. Median relative abundance of pathways by environment. (XLSX 26Â kb)
DOI: 10.6084/m9.figshare.5946340.v1
title: Additional file 5: of Taxa-function robustness in microbial communities

description: Table S1. Median relative abundance of pathways by environment. (XLSX 26Â kb)
DOI: 10.6084/m9.figshare.5946331
title: Additional file 6: of Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions

description: An ipython notebook that runs the simulations described in this study. (IPYNB 637Â kb)
DOI: 10.6084/m9.figshare.5946331.v1
title: Additional file 6: of Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions

description: An ipython notebook that runs the simulations described in this study. (IPYNB 637Â kb)