cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25405/data.ncl.9883085
title: 1. Expanded Interiors - House of the Cryptoporticus, Pompeii - Metadata on Technical Method

description: This document provides the <b>Metadata on Technical Method</b> for all Expanded Interiors collections. Please read in conjunction with the <b>Project Overview Metadata</b> and the <b>ReadMe files </b>for each collection.
DOI: 10.25405/data.ncl.9883094
title: 4. Expanded Interiors - House of the Cryptoporticus, Pompeii - Metadata for collection

description: This document provides the <b>Metadata on Technical Method</b> for the Expanded Interiors collection: House of the Cryptoporticus, Pompeii. Please read in conjunction with the <b>Project Overview Metadata</b> and the <b>ReadMe files </b>for each collection.
DOI: 10.25405/data.ncl.9883097
title: 8. Expanded Interiors - House of the Cryptoporticus, Pompeii - Photographic documentation of the scanning of the house

description: Images of the 3D scanning (FARO FOCUS 3D scanner) in the House of the Cryptoporticus. Digital model of the scanned areas of the house.Please read in conjunction with the<b> Project Overview Metadata</b><br>Images of objects or houses from Pompeii need to be credited: MINISTERO PER I BENI E LE ATTIVITÀ CULTURALI - PARCO ARCHEOLOGICO DI POMPEI and the Expanded Interiors project.<br><br>
DOI: 10.25405/data.ncl.9883115
title: 3. Expanded Interiors - Exhibition at Pompeii - ReadMe file collection: spreadsheet of contents

description: This document is a contents page and guide for using the <i>Expanded Interiors</i> Collection <b>Exhibition at Pompeii</b>. Please read in conjunction with the <b>Project Overview Metadata, Metadata Technical Method </b>and <b>Metadata for collection</b>. This document includes:Spreadsheet of all <i>Expanded Interiors</i> Collections; Content of <b>Exhibition at Pompeii</b> (highlighted within the spreadsheet); File labelling guide; Casa del Criptoportico – Room numbers & direction reference guide
DOI: 10.25405/data.ncl.9883118
title: 4. Expanded Interiors - Exhibition at Pompeii - Metadata for collection

description: This document provides the <b>Metadata on Technical Method</b> for the Expanded Interiors collection: Exhibition at Pompeii. Please read in conjunction with the <b>Project Overview Metadata</b> and the <b>ReadMe files </b>for each collection.
DOI: 10.25405/data.ncl.9883136
title: 3. Expanded Interiors - Roman Objects from Herculaneum - ReadMe file collection: spreadsheet of contents

description: This document is a contents page and guide for using the <i>Expanded Interiors</i> Collection <b>Roman Objects from Herculaneum</b>. Please read in conjunction with the <b>Project Overview Metadata, Metadata Technical Method </b>and <b>Metadata for collection</b>. This document includes: File labelling guide; Spreadsheet of all <i>Expanded Interiors</i> Collections; Content of the <b>Roman Objects from Herculaneum Collection</b> (highlighted within the spreadsheet).
DOI: 10.25405/data.ncl.9883151
title: 1. Expanded Interiors - House of the Beautiful Courtyard, Herculaneum - Metadata on Technical Method

description: This document provides the <b>Metadata on Technical Method</b> for all Expanded Interiors collections. Please read in conjunction with the <b>Project Overview Metadata</b> and the <b>ReadMe files </b>for each collection.
DOI: 10.25405/data.ncl.9883172
title: 1. Expanded Interiors - Exhibition at Herculaneum - Metadata on Technical Method

description: This document provides the <b>Metadata on Technical Method</b> for all Expanded Interiors collections. Please read in conjunction with the <b>Project Overview Metadata</b> and the <b>ReadMe files </b>for each collection.
DOI: 10.25405/data.ncl.9883202
title: 3. Expanded Interiors - Exhibition at Herculaneum - ReadMe file collection: spreadsheet of contents

description: This document is a contents page and guide for using the <i>Expanded Interiors</i> Collection <b>Exhibition at Herculaneum</b>. Please read in conjunction with the <b>Project Overview Metadata, Metadata Technical Method </b>and <b>Metadata for collection</b>. This document includes: Spreadsheet of all <i>Expanded Interiors</i> Collections; Content of the <b>Exhibition at Herculaneum </b>(highlighted within the spreadsheet); File labelling guide; Casa del Bel Cortile – Room numbers & direction reference guide
DOI: 10.25405/data.ncl.9929126
title: 3. Expanded Interiors - Roman Objects from Pompeii - ReadMe file collection: spreadsheet of contents

description: This document is a contents page and guide for using the <i>Expanded Interiors</i> Collection <b>Roman Objects from Pompeii</b>. Please read in conjunction with the <b>Project Overview Metadata, Metadata Technical Method </b>and <b>Metadata for collection</b>. This document includes: File labelling guide; Spreadsheet of all <i>Expanded Interiors</i> Collections; Content of the <b>Roman Objects from Pompeii Collection</b> (highlighted within the spreadsheet).
DOI: 10.25386/genetics.9946979.v1
title: Supplemental Material for Barr et al., 2019

description: Document includes supplemental figures, plus supplemental "methods." Supplemental method are sequences relevant to the various UTR genotypes described in the paper, and list of oligos used for oligo fish probes.<br>
DOI: 10.25386/genetics.9946979
title: Supplemental Material for Barr et al., 2019

description: Document includes supplemental figures, plus supplemental "methods." Supplemental method are sequences relevant to the various UTR genotypes described in the paper, and list of oligos used for oligo fish probes.<br>
DOI: 10.25405/data.ncl.9755045.v2
title: Data for "Characterizing the Randot Preschool Stereotest" Read et al 2019

description: This folder contains R markdown files, e.g. AnalyseValidityData6.Rmd, containing analysis code, and associated .RData files containing the data.<br>You will need R, Rstudio and associated libraries (available from rstudio.com, www.r-project.org). <br>To generate the statistical analysis and figures shown in the paper, open up each .Rmd file and hit "knit" to run the code and generate a Word or PDF file.<br><br>
DOI: 10.6084/m9.figshare.3761562.v1256
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.9957521.v1
title: dictyochophyte_alignment.fas

description: Dictyochophyte reference tree sequence alignment
DOI: 10.6084/m9.figshare.9957524.v1
title: dictyochophyte_accession.txt

description: Dictyochophyte reference tree fasta header to accession
DOI: 10.6084/m9.figshare.9957527.v1
title: pelagophyte_tree.tree

description: Pelagophyte reference tree
DOI: 10.6084/m9.figshare.9957530.v1
title: pelagophyte.phyloassignerdb.tar.gz

description: PhyloAssigner reference package for pelagophytes
DOI: 10.6084/m9.figshare.9957536.v1
title: pelagophyte_alignment.fa

description: Pelagophyte reference tree alignment
DOI: 10.6084/m9.figshare.9957548.v1
title: stramenopile_alignment.fa

description: Stramenopile reference tree sequence alignment
DOI: 10.6084/m9.figshare.9957533.v1
title: pelagophyte_accession.txt

description: Pelagophyte reference tree fasta header to accession
DOI: 10.6084/m9.figshare.9957539.v1
title: dictyochophyte.phyloassignerdb.tar.gz

description: PhyloAssigner reference package for dictyochophytes
DOI: 10.6084/m9.figshare.9957542.v1
title: dictyochophyte_tree.tree

description: Dictyochophyte reference tree
DOI: 10.6084/m9.figshare.9957545.v1
title: stramenopile_accession.txt

description: Stramenopile reference tree fasta header to accession
DOI: 10.6084/m9.figshare.9957551.v1
title: stramenopile_tree.tree

description: Stramenopile reference tree
DOI: 10.6084/m9.figshare.9957554.v1
title: stramenopile.phyloassignerdb.tar.gz

description: PhyloAssigner reference package for stramenopiles
DOI: 10.6084/m9.figshare.8192111.v3
title: A novel antisense RNA ASPACT confers multi-level suppression of PACT and associated signalling

description: The innate immune system is the frontline host protection against pathogens. Effective antiviral immunity is elicited upon recognition of viral RNAs by the host pattern recognition receptors. One of the major viral RNA sensors is retinoic acid inducible gene-1, which triggers the production of interferons (IFNs). In turn, this protective response requires another viral sensor and immunity factor interferon-inducible protein kinase RNA activator (PACT/PRKRA). Here, we report the identification and characterization of a novel antisense <i>PACT</i> gene that expresses a non-coding RNA in a convergent and interferon-inducible manner. Publicly available gene structure and expression data revealed that this gene, that we termed <i>ASPACT</i>, overlaps with the 3′ -end of the <i>PACT</i> locus and is highly expressed during viral infection. Our results confirm the IFN-β-inducibility of <i>ASPACT</i>, which is dependent on STAT-1/2. We further discovered that downregulation of ASPACT impacts both the expression and localization of the PACT transcript. At the transcription level, ChIP and ChIRP assays demonstrated that the ASPACT non-coding RNA occupies distinct chromatin regions of <i>PACT</i> gene and is important for promoter recruitment of the epigenetic silencer HDAC1. In parallel, ASPACT was also found to mediate nuclear retention of the PACT mRNA via direct RNA–RNA interaction, as revealed by RNA antisense purification assay. In summary, our results support the model that the non-coding RNA ASPACT acts as a negative regulator of PACT at multiple levels, and reveal a novel regulator of the viral counteractive response.
DOI: 10.25387/g3.9936893
title: Supplemental Material for Storey et al., 2019

description: Figure S1, Effects of mutation position and homology length ratios upon precise allele replacement; Figure S2, DNA mutations within individual clones of the gene targeting vector library; Figure S3, Amino acid substitutions encoded by individual clones of the gene targeting vector library; Figure S4, Nature of mutations within Ade6 protein discovered by population-scale, precise allele replacements
DOI: 10.25387/g3.9936893.v1
title: Supplemental Material for Storey et al., 2019

description: Figure S1, Effects of mutation position and homology length ratios upon precise allele replacement; Figure S2, DNA mutations within individual clones of the gene targeting vector library; Figure S3, Amino acid substitutions encoded by individual clones of the gene targeting vector library; Figure S4, Nature of mutations within Ade6 protein discovered by population-scale, precise allele replacements
DOI: 10.6084/m9.figshare.3761562.v1257
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.25387/g3.9252530
title: Supplemental Material for Satterlee et al., 2019

description: Supplemental Figures S1-S4<br>
DOI: 10.25387/g3.9252530.v1
title: Supplemental Material for Satterlee et al., 2019

description: Supplemental Figures S1-S4<br>
DOI: 10.25386/genetics.9891440
title: Supplemental Material for Lütkenhaus et al, 2019

description: Supplementary figures S1-S11 and supplementary tables S1-S6 for manuscript "Comparative genomics and transcriptomics to analyze fruiting body development in filamentous ascomycetes"
DOI: 10.25386/genetics.9891440.v1
title: Supplemental Material for Lütkenhaus et al, 2019

description: Supplementary figures S1-S11 and supplementary tables S1-S6 for manuscript "Comparative genomics and transcriptomics to analyze fruiting body development in filamentous ascomycetes"
DOI: 10.6084/m9.figshare.3761562.v1258
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.25412/iop.9906620.v1
title: EuropeanSummer2015_data.tar.gz

description: Data generated from analysis for the paper 'Ocean and atmosphere influence on the 2015 European Heatwave'.
DOI: 10.25412/iop.9906620
title: EuropeanSummer2015_data.tar.gz

description: Data generated from analysis for the paper 'Ocean and atmosphere influence on the 2015 European Heatwave'.
DOI: 10.6084/m9.figshare.9919373.v2
title: MZ_0001_001_Tuckerella_fossilibus_20x

description: <b>Species:</b> <i>Tuckerella fossilibus</i> Khaustov, Sergeyenko & Perkovsky, 2014<b>Source:</b> Bitterfeld amber<b>Deposition:</b> GPIH 4325, ex. coll. Klug 2333<b>Author's catalog number:</b> MZ_XXXX_001_Tuckerella_fossilibus_XXx_XXX<b>Microscope:</b> Nikon Eclipse Ni-U<br><b>Camera:</b> Nikon DS-Ri2<b>Image aquisition software:</b> NIS-Elements D<b>Optics:</b> CFI Plan Apochromat Lambda 20X + DIC<b>Light corrections:</b> Adobe Photoshop Lightroom
DOI: 10.25387/g3.8967986
title: Supplementary Material for Tyler, Miller and Fletcher, 2019

description: Supplementary material for the article Tyler et al 2019. Consists of 8 supplemental figures and 8 supplemental tables. The 8 supplemental figures plus supplemental Table 1 are found in the PDF file. The other supplemental tables are presented as individual Excel files.
DOI: 10.25387/g3.8967986.v1
title: Supplementary Material for Tyler, Miller and Fletcher, 2019

description: Supplementary material for the article Tyler et al 2019. Consists of 8 supplemental figures and 8 supplemental tables. The 8 supplemental figures plus supplemental Table 1 are found in the PDF file. The other supplemental tables are presented as individual Excel files.
DOI: 10.25387/g3.9929780
title: Supplemental Material for Liu, et al., 2019

description: Supplemental tables and figures for the manuscript entitled "Selecting closely-linked SNPs based on local epistatic effects for haplotype construction improves power of association mapping"
DOI: 10.25387/g3.9929780.v1
title: Supplemental Material for Liu, et al., 2019

description: Supplemental tables and figures for the manuscript entitled "Selecting closely-linked SNPs based on local epistatic effects for haplotype construction improves power of association mapping"
DOI: 10.6084/m9.figshare.9919373.v3
title: MZ_0001_001_Tuckerella_fossilibus_20x_old

description: <b>Species:</b> <i>Tuckerella fossilibus</i> Khaustov, Sergeyenko & Perkovsky, 2014<b>Source:</b> Bitterfeld amber<b>Deposition:</b> GPIH 4325, ex. coll. Klug 2333<b>Author's catalog number:</b> MZ_XXXX_001_Tuckerella_fossilibus_XXx_XXX<b>Microscope:</b> Nikon Eclipse Ni-U<br><b>Camera:</b> Nikon DS-Ri2<b>Image aquisition software:</b> NIS-Elements D<b>Optics:</b> CFI Plan Apochromat Lambda 20X + DIC<b>Light corrections:</b> Adobe Photoshop Lightroom
DOI: 10.6084/m9.figshare.9973676
title: MZ_0001_001_Tuckerella_fossilibus_20x

description: <b>Species:</b> <i>Tuckerella fossilibus</i> Khaustov, Sergeyenko & Perkovsky, 2014<b>Source:</b> Bitterfeld amber<b>Deposition:</b> GPIH 4325, ex. coll. Klug 2333<b>Author's catalog number:</b> MZ_XXXX_001_Tuckerella_fossilibus_XXx_XXX<b>Microscope:</b> Nikon Eclipse Ni-U<br><b>Camera:</b> Nikon DS-Ri2<b>Image aquisition software:</b> NIS-Elements D<b>Optics:</b> CFI Plan Apochromat Lambda 20X + DIC<b>Light corrections:</b> Adobe Photoshop Lightroom
DOI: 10.25387/g3.9755336.v1
title: Supplemental Material for Marla et al., 2019

description: Supplemental Figures S1–24Supplemental Tables S1–S8File1 contains genetic linkage maps of three NAM familiesFile2 contains Hapmap data of the chilling NAM populationFile3 contains phenotype information and R-scripts<br><br>
DOI: 10.25387/g3.9755336
title: Supplemental Material for Marla et al., 2019

description: Supplemental Figures S1–24Supplemental Tables S1–S8File1 contains genetic linkage maps of three NAM familiesFile2 contains Hapmap data of the chilling NAM populationFile3 contains phenotype information and R-scripts<br><br>
DOI: 10.6084/m9.figshare.3761562.v1263
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.25413/sun.9980498
title: Erica species anthocyanin biosynthesis gene expression data

description: Real Time quantitative reverse transcriptase PCR data of the anthocyanin gene expression data from 28 Erica species and sub species.
DOI: 10.25387/g3.9943517
title: Supplemental Material for Matsumoto, Piraino, and Miglietta, 2019

description: Medusae of Turritopsis dohrnii undergo reverse development in response to physical damage, adverse environmental conditions, or aging. Senescent, weakened or damaged medusae transform into a cluster of poorly differentiated cells (known as the cyst stage), which metamorphose back into a preceding life cycle stage, the polyp. During the metamorphosis, cell transdifferentiation occurs. The cyst represents the intermediate stage between a reverting medusa and a healthy polyp, during which cell transdifferentiation and tissue reorganization take place. Here we characterize and compare the transcriptomes of the typical polyp and newborn medusa stages of T. dohrnii with that of the cyst, to identify biological networks potentially involved in the reverse development and transdifferentiation processes. The polyp, medusa and cyst of T. dohrnii were sequenced through Illumina RNA-sequencing and assembled using a de novo approach, resulting in 92,569, 74,639 and 86,373 contigs, respectively. The transcriptomes were annotated and comparative analyses among the stages identified biological networks that were significantly over-and under-expressed in the cyst as compared to the polyp and medusa stages. Biological processes that occur at the cyst stage such as telomerase activity, regulation of transposable elements and DNA repair systems, and suppression of cell signaling pathways, mitotic cell division and cellular differentiation and development may be involved in T. dohrnii’s reverse development and transdifferentiation. Our results are the first attempt to understand T. dohrnii’s life-cycle reversal at the genetic level, and indicate possible avenues of future research on developmental strategies, cell transdifferentiation, and aging using T. dohrnii as a non-traditional in vivo system. <br><br>Submitted on GSA are all data files: Figures, Tables and supplementary material. The complete descriptions for figures, tables and supplementary material start from pages 44 in FinalText_G3_Matsumoto2019 document submitted to G3 (Accepted with pending minor revisions: <b>G3/2019/400487</b>.)
DOI: 10.25387/g3.9943517.v1
title: Supplemental Material for Matsumoto, Piraino, and Miglietta, 2019

description: Medusae of Turritopsis dohrnii undergo reverse development in response to physical damage, adverse environmental conditions, or aging. Senescent, weakened or damaged medusae transform into a cluster of poorly differentiated cells (known as the cyst stage), which metamorphose back into a preceding life cycle stage, the polyp. During the metamorphosis, cell transdifferentiation occurs. The cyst represents the intermediate stage between a reverting medusa and a healthy polyp, during which cell transdifferentiation and tissue reorganization take place. Here we characterize and compare the transcriptomes of the typical polyp and newborn medusa stages of T. dohrnii with that of the cyst, to identify biological networks potentially involved in the reverse development and transdifferentiation processes. The polyp, medusa and cyst of T. dohrnii were sequenced through Illumina RNA-sequencing and assembled using a de novo approach, resulting in 92,569, 74,639 and 86,373 contigs, respectively. The transcriptomes were annotated and comparative analyses among the stages identified biological networks that were significantly over-and under-expressed in the cyst as compared to the polyp and medusa stages. Biological processes that occur at the cyst stage such as telomerase activity, regulation of transposable elements and DNA repair systems, and suppression of cell signaling pathways, mitotic cell division and cellular differentiation and development may be involved in T. dohrnii’s reverse development and transdifferentiation. Our results are the first attempt to understand T. dohrnii’s life-cycle reversal at the genetic level, and indicate possible avenues of future research on developmental strategies, cell transdifferentiation, and aging using T. dohrnii as a non-traditional in vivo system. <br><br>Submitted on GSA are all data files: Figures, Tables and supplementary material. The complete descriptions for figures, tables and supplementary material start from pages 44 in FinalText_G3_Matsumoto2019 document submitted to G3 (Accepted with pending minor revisions: <b>G3/2019/400487</b>.)
DOI: 10.5281/zenodo.3760526
title: Dataset for "Remapping of Greenland ice sheet surface mass balance anomalies for large ensemble sea-level change projections"

description: This dataset is used to reproduce the results presented in the following publication: Goelzer, H., Noel, B. P. Y., Edwards, T. L., Fettweis, X., Gregory, J. M., Lipscomb, W. H., van de Wal, R. S. W., and van den Broeke, M. R.: Remapping of Greenland ice sheet surface mass balance anomalies for large ensemble sea-level change projections, The Cryosphere Discuss., https://doi.org/10.5194/tc-2019-188, in review, 2019.
DOI: 10.5281/zenodo.3760525
title: Dataset for "Remapping of Greenland ice sheet surface mass balance anomalies for large ensemble sea-level change projections"

description: This dataset is used to reproduce the results presented in the following publication: Goelzer, H., Noel, B. P. Y., Edwards, T. L., Fettweis, X., Gregory, J. M., Lipscomb, W. H., van de Wal, R. S. W., and van den Broeke, M. R.: Remapping of Greenland ice sheet surface mass balance anomalies for large ensemble sea-level change projections, The Cryosphere Discuss., https://doi.org/10.5194/tc-2019-188, in review, 2019.
DOI: 10.6084/m9.figshare.8181701.v1
title: Nematode 18S Alignment (Fig. 2A)

description: This is a multiple sequence alignment of 18S sequences.
DOI: 10.25405/data.ncl.9959819
title: Expanded Interiors - Project Overview Metadata

description: This document gives an overview of the Expanded Interiors project: context, team, partners, funders, research, outputs, Expanded Interiors collections.
DOI: 10.25405/data.ncl.9994793
title: Data supporting publication: Turbulent radial thermal counterflow in the framework of the HVBK model

description: Numerical data supporting results illustrated by Figures 1-6 of the publication<br>
DOI: 10.6084/m9.figshare.7707695.v2
title: Energy Audit in fisheries

description: ----
DOI: 10.6084/m9.figshare.7707695.v3
title: ----

description: ----
DOI: 10.6084/m9.figshare.7707695.v4
title: ----

description: Energy audit in fisheries<br>
DOI: 10.6084/m9.figshare.7707695.v5
title: Energy Audit in fisheries

description: Energy audit in fisheries<br>
DOI: 10.6084/m9.figshare.7707695.v6
title: Energy Audit in fisheries

description: Energy audit in fisheries<br>
DOI: 10.25386/genetics.9897749
title: Supplemental Material for Wolfe et al., 2019

description: Supplementary Figures and Tables
DOI: 10.25386/genetics.9897749.v1
title: Supplemental Material for Wolfe et al., 2019

description: Supplementary Figures and Tables
DOI: 10.25387/g3.9249245
title: Supplemental Material for Fehr et al., 2019

description: Figure S1: Fraction of genetic interconnectivity signs inferred correctly from synthetic data. Figure S2: Training error of SA-inferred gene circuits. Figure S3: Inference of hg and kinetic parameters from synthetic data. Figure S4: Comparison of the spatiotemporal pattern of gap gene expression with the output of gene circuits inferred with FIGR and SA. Table S1: User-defined options and parameters utilized in FIGR code. File S1: Alternative method for determining kinetic parameters.