cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7613216
title: Identification and characterization of stem-bulge RNAs in <i>Drosophila melanogaster</i>

description: Non-coding Y RNAs and stem-bulge RNAs are homologous small RNAs in vertebrates and nematodes, respectively. They share a conserved function in the replication of chromosomal DNA in these two groups of organisms. However, functional homologues have not been found in insects, despite their common early evolutionary history. Here, we describe the identification and functional characterization of two sbRNAs in <i>Drosophila melanogaster</i>, termed Dm1 and Dm2. The genes coding for these two RNAs were identified by a computational search in the genome of <i>D. melanogaster</i> for conserved sequence motifs present in nematode sbRNAs. The predicted secondary structures of Dm1 and Dm2 partially resemble nematode sbRNAs and show stability in molecular dynamics simulations. Both RNAs are phylogenetically closer related to nematode sbRNAs than to vertebrate Y RNAs. Dm1, but not Dm2 sbRNA is abundantly expressed in <i>D. melanogaster</i> S2 cells and adult flies. Only Dm1, but not Dm2 sbRNA can functionally replace Y RNAs in a human cell-free DNA replication initiation system. Therefore, Dm1 is the first functional sbRNA described in insects, allowing future investigations into the physiological roles of sbRNAs in the genetically tractable model organism <i>D. melanogaster</i>.
DOI: 10.7284/125115
title: Anemometer data collected during research cruise EN584 using a RM Young 05103 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125116
title: Anemometer data collected during research cruise EN584 using a RM Young 05103 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7613189
title: Body-part metaphors / Meronyms

description: This list consists of body-part metaphors that exist in various languages. The list builds on the seed list used in my MA thesis. All body-part metaphors which are included in this list were verified in an elicitation study.
DOI: 10.6084/m9.figshare.7613216.v2
title: Identification and characterization of stem-bulge RNAs in <i>Drosophila melanogaster</i>

description: Non-coding Y RNAs and stem-bulge RNAs are homologous small RNAs in vertebrates and nematodes, respectively. They share a conserved function in the replication of chromosomal DNA in these two groups of organisms. However, functional homologues have not been found in insects, despite their common early evolutionary history. Here, we describe the identification and functional characterization of two sbRNAs in <i>Drosophila melanogaster</i>, termed Dm1 and Dm2. The genes coding for these two RNAs were identified by a computational search in the genome of <i>D. melanogaster</i> for conserved sequence motifs present in nematode sbRNAs. The predicted secondary structures of Dm1 and Dm2 partially resemble nematode sbRNAs and show stability in molecular dynamics simulations. Both RNAs are phylogenetically closer related to nematode sbRNAs than to vertebrate Y RNAs. Dm1, but not Dm2 sbRNA is abundantly expressed in <i>D. melanogaster</i> S2 cells and adult flies. Only Dm1, but not Dm2 sbRNA can functionally replace Y RNAs in a human cell-free DNA replication initiation system. Therefore, Dm1 is the first functional sbRNA described in insects, allowing future investigations into the physiological roles of sbRNAs in the genetically tractable model organism <i>D. melanogaster</i>.
DOI: 10.6084/m9.figshare.7613219.v1
title: Data for "Host evolutionary history predicts virus prevalence across bumblebee species"

description: Viral presence/absence data and phylogenetic trees for "Host evolutionary history predicts virus prevalence across bumblebee species", code for analysis can be found at https://github.com/dpascall/bumblebee-virus-cophylo<br>
DOI: 10.6084/m9.figshare.7613216.v1
title: Identification and characterization of stem-bulge RNAs in <i>Drosophila melanogaster</i>

description: Non-coding Y RNAs and stem-bulge RNAs are homologous small RNAs in vertebrates and nematodes, respectively. They share a conserved function in the replication of chromosomal DNA in these two groups of organisms. However, functional homologues have not been found in insects, despite their common early evolutionary history. Here, we describe the identification and functional characterization of two sbRNAs in <i>Drosophila melanogaster</i>, termed Dm1 and Dm2. The genes coding for these two RNAs were identified by a computational search in the genome of <i>D. melanogaster</i> for conserved sequence motifs present in nematode sbRNAs. The predicted secondary structures of Dm1 and Dm2 partially resemble nematode sbRNAs and show stability in molecular dynamics simulations. Both RNAs are phylogenetically closer related to nematode sbRNAs than to vertebrate Y RNAs. Dm1, but not Dm2 sbRNA is abundantly expressed in <i>D. melanogaster</i> S2 cells and adult flies. Only Dm1, but not Dm2 sbRNA can functionally replace Y RNAs in a human cell-free DNA replication initiation system. Therefore, Dm1 is the first functional sbRNA described in insects, allowing future investigations into the physiological roles of sbRNAs in the genetically tractable model organism <i>D. melanogaster</i>.
DOI: 10.6084/m9.figshare.7613219.v3
title: Data for "Host evolutionary history predicts virus prevalence across bumblebee species"

description: Viral presence/absence data and phylogenetic trees for "Host evolutionary history predicts virus prevalence across bumblebee species", code for analysis can be found at https://github.com/dpascall/bumblebee-virus-cophylo<br>
DOI: 10.6084/m9.figshare.7613189.v1
title: Body-part metaphors / Meronyms

description: This list consists of body-part metaphors that exist in various languages. The list builds on the seed list used in my MA thesis. All body-part metaphors which are included in this list were verified in an elicitation study.
DOI: 10.6084/m9.figshare.7613219.v2
title: Data for "Host evolutionary history predicts virus prevalence across bumblebee species"

description: Viral presence/absence data and phylogenetic trees for "Host evolutionary history predicts virus prevalence across bumblebee species", code for analysis can be found at https://github.com/dpascall/bumblebee-virus-cophylo<br>
DOI: 10.7284/125052
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise EN584 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7613135
title: CNNs for Automatic Glaucoma Assessment using Fundus Images: An Extensive Validation

description: A new clinical database, ACRIMA, has been made publicly available, containing 705 labelled images. It is composed of 396 glaucomatous images and 309 normal images. Additionally, python scripts used to obtain the presented results are also available.<br>
DOI: 10.7284/125018
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN584 using a Furuno GP-90D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7613060
title: Survey data of the identification of each herb by the three expert group(csv)

description: Survey data of the identification of each herb by the three expert group(csv)
DOI: 10.7284/125019
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN584 using a Northstar 952 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125022
title: Gyrocompass data collected during research cruise EN584 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7612859
title: Additional file 5: of A systematic review of dimensions evaluating patient experience in chronic illness

description: Questionnaires assessing patientâ s attitudes about treatments or healthcare. (XLS 54 kb)
DOI: 10.6084/m9.figshare.7612862
title: Additional file 6: of A systematic review of dimensions evaluating patient experience in chronic illness

description: Questionnaires assessing patientâ s experience of treatments or healthcare. (XLS 35 kb)
DOI: 10.7284/125023
title: Gyrocompass data collected during research cruise EN584 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7612862.v1
title: Additional file 6: of A systematic review of dimensions evaluating patient experience in chronic illness

description: Questionnaires assessing patientâ s experience of treatments or healthcare. (XLS 35 kb)
DOI: 10.6084/m9.figshare.7612853
title: Additional file 4: of A systematic review of dimensions evaluating patient experience in chronic illness

description: Questionnaires assessing patientâ s feelings and attitudes about illness. (XLS 53 kb)
DOI: 10.6084/m9.figshare.7612853.v1
title: Additional file 4: of A systematic review of dimensions evaluating patient experience in chronic illness

description: Questionnaires assessing patientâ s feelings and attitudes about illness. (XLS 53 kb)
DOI: 10.6084/m9.figshare.7612859.v1
title: Additional file 5: of A systematic review of dimensions evaluating patient experience in chronic illness

description: Questionnaires assessing patientâ s attitudes about treatments or healthcare. (XLS 54 kb)
DOI: 10.6084/m9.figshare.7612847
title: Additional file 2: of A systematic review of dimensions evaluating patient experience in chronic illness

description: Questionnaires assessing HRQOL or QOL. (XLS 59 kb)
DOI: 10.6084/m9.figshare.7612850
title: Additional file 3: of A systematic review of dimensions evaluating patient experience in chronic illness

description: Questionnaires assessing functional status or symptoms. (XLS 52 kb)
DOI: 10.7284/125117
title: Meteorological Station data collected during research cruise EN584 using a RM Young 26800 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7612850.v1
title: Additional file 3: of A systematic review of dimensions evaluating patient experience in chronic illness

description: Questionnaires assessing functional status or symptoms. (XLS 52 kb)
DOI: 10.6084/m9.figshare.7612826
title: Additional file 7: of Comparative transcriptomic analysis unveils interactions between the regulatory CarS protein and light response in Fusarium

description: Table S6. Orthologous genes activated by light and carS mutation in F. fujikuroi and F. oxysporum. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.7612847.v1
title: Additional file 2: of A systematic review of dimensions evaluating patient experience in chronic illness

description: Questionnaires assessing HRQOL or QOL. (XLS 59 kb)
DOI: 10.7284/125114
title: Radiometer data collected during research cruise EN584 using a Eppley RAD instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7612817
title: Additional file 6: of Comparative transcriptomic analysis unveils interactions between the regulatory CarS protein and light response in Fusarium

description: Table S5. Identification of F. fujikuroi and F. oxysporum potential orthologs using the Best Bidirectional Hit algorithm. (XLSX 417 kb)
DOI: 10.6084/m9.figshare.7612817.v1
title: Additional file 6: of Comparative transcriptomic analysis unveils interactions between the regulatory CarS protein and light response in Fusarium

description: Table S5. Identification of F. fujikuroi and F. oxysporum potential orthologs using the Best Bidirectional Hit algorithm. (XLSX 417 kb)
DOI: 10.6084/m9.figshare.7612826.v1
title: Additional file 7: of Comparative transcriptomic analysis unveils interactions between the regulatory CarS protein and light response in Fusarium

description: Table S6. Orthologous genes activated by light and carS mutation in F. fujikuroi and F. oxysporum. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.7612808
title: Additional file 5: of Comparative transcriptomic analysis unveils interactions between the regulatory CarS protein and light response in Fusarium

description: Table S4. List of F. oxysporum genes influenced at least two-fold by light (Tables S4A and S4B) or by the carS mutation (C and D) sorted by their degree of activation (A and C) or repression (B and D). (XLSX 93 kb)
DOI: 10.7284/125142
title: Radiometer data collected during research cruise EN584 using a Eppley RAD instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7612808.v1
title: Additional file 5: of Comparative transcriptomic analysis unveils interactions between the regulatory CarS protein and light response in Fusarium

description: Table S4. List of F. oxysporum genes influenced at least two-fold by light (Tables S4A and S4B) or by the carS mutation (C and D) sorted by their degree of activation (A and C) or repression (B and D). (XLSX 93 kb)
DOI: 10.7284/125072
title: TSG (Thermosalinograph) data collected during research cruise EN584 using a Sea-Bird SBE-45 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7612793
title: Additional file 3: of Comparative transcriptomic analysis unveils interactions between the regulatory CarS protein and light response in Fusarium

description: Table S2. List of F. fujikuroi genes influenced at least two-fold by light (A and B) or by the carS mutation (C and D) sorted by their degree of activation (Tables S2A and S2C) or repression (B and D). (XLSX 150 kb)
DOI: 10.6084/m9.figshare.7612793.v1
title: Additional file 3: of Comparative transcriptomic analysis unveils interactions between the regulatory CarS protein and light response in Fusarium

description: Table S2. List of F. fujikuroi genes influenced at least two-fold by light (A and B) or by the carS mutation (C and D) sorted by their degree of activation (Tables S2A and S2C) or repression (B and D). (XLSX 150 kb)
DOI: 10.7284/125073
title: TSG (Thermosalinograph) data collected during research cruise EN584 using a Sea-Bird SBE-21 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125026
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise EN585 using a Hawaii UHDAS instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125119
title: Anemometer data collected during research cruise EN585 using a RM Young 05103 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125120
title: Anemometer data collected during research cruise EN585 using a RM Young 05103 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7612745
title: Additional file 3: of Retrophylogenomics in rorquals indicate large ancestral population sizes and a rapid radiation

description: Data S2: NEXUS file with the presence-absence matrix of CHR2 insertions in baleen whales encoded as 1 (presence) and 0 (absence). (ZIP 159 kb)
DOI: 10.6084/m9.figshare.7612745.v1
title: Additional file 3: of Retrophylogenomics in rorquals indicate large ancestral population sizes and a rapid radiation

description: Data S2: NEXUS file with the presence-absence matrix of CHR2 insertions in baleen whales encoded as 1 (presence) and 0 (absence). (ZIP 159 kb)
DOI: 10.6084/m9.figshare.7612736
title: Additional file 2: of Retrophylogenomics in rorquals indicate large ancestral population sizes and a rapid radiation

description: Data S1: VCF file with filtered CHR2 variants in baleen whales called by MELT. (ZIP 10547 kb)
DOI: 10.7284/125024
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN585 using a Furuno GP-90D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7612736.v1
title: Additional file 2: of Retrophylogenomics in rorquals indicate large ancestral population sizes and a rapid radiation

description: Data S1: VCF file with filtered CHR2 variants in baleen whales called by MELT. (ZIP 10547 kb)
DOI: 10.7284/125025
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN585 using a Northstar 952 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125027
title: Gyrocompass data collected during research cruise EN585 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125028
title: Gyrocompass data collected during research cruise EN585 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125121
title: Meteorological Station data collected during research cruise EN585 using a RM Young 26800 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125118
title: Radiometer data collected during research cruise EN585 using a Eppley RAD instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125143
title: Radiometer data collected during research cruise EN585 using a Eppley RAD instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125074
title: TSG (Thermosalinograph) data collected during research cruise EN585 using a Sea-Bird SBE-45 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125075
title: TSG (Thermosalinograph) data collected during research cruise EN585 using a Sea-Bird SBE-21 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125032
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise EN586 using a Hawaii UHDAS instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125123
title: Anemometer data collected during research cruise EN586 using a RM Young 05103 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7612562
title: Additional file 4: of Population structure of human gut bacteria in a diverse cohort from rural Tanzania and Botswana

description: Genetic relationship matrix file set used for linear regression analysis of UniFrac dependence on host relatedness and host geographic separation. This is constructed using the GCTA software (--make-grm), based on Illumina Omni 5â M genotype array dataset for 97 African individuals, and contains the (anonymized) individual identification codes. (ID 1 kb)
DOI: 10.6084/m9.figshare.7612565
title: Additional file 5: of Population structure of human gut bacteria in a diverse cohort from rural Tanzania and Botswana

description: Contains the genetic similarity values, where each row corresponds to a pair of individuals. (GZ 47 kb)
DOI: 10.7284/125124
title: Anemometer data collected during research cruise EN586 using a RM Young 05103 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7612562.v1
title: Additional file 4: of Population structure of human gut bacteria in a diverse cohort from rural Tanzania and Botswana

description: Genetic relationship matrix file set used for linear regression analysis of UniFrac dependence on host relatedness and host geographic separation. This is constructed using the GCTA software (--make-grm), based on Illumina Omni 5â M genotype array dataset for 97 African individuals, and contains the (anonymized) individual identification codes. (ID 1 kb)
DOI: 10.6084/m9.figshare.7612565.v1
title: Additional file 5: of Population structure of human gut bacteria in a diverse cohort from rural Tanzania and Botswana

description: Contains the genetic similarity values, where each row corresponds to a pair of individuals. (GZ 47 kb)
DOI: 10.6084/m9.figshare.7612556
title: Additional file 3: of Population structure of human gut bacteria in a diverse cohort from rural Tanzania and Botswana

description: The estimated identity-by-descent used for the within-population correlation between UniFrac distance and host relatedness, as calculated using the plink --genome routine on the Illumina Omni 5â M genotype array dataset for 97 African individuals. (IBD 104 kb)
DOI: 10.7284/125053
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise EN586 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7612556.v1
title: Additional file 3: of Population structure of human gut bacteria in a diverse cohort from rural Tanzania and Botswana

description: The estimated identity-by-descent used for the within-population correlation between UniFrac distance and host relatedness, as calculated using the plink --genome routine on the Illumina Omni 5â M genotype array dataset for 97 African individuals. (IBD 104 kb)
DOI: 10.7284/125029
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN586 using a Furuno GP-90D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7612544
title: Additional file 2: of Population structure of human gut bacteria in a diverse cohort from rural Tanzania and Botswana

description: All supplementary tables are listed in Additional_File_2.xls. (XLSX 8380 kb)
DOI: 10.6084/m9.figshare.7612544.v1
title: Additional file 2: of Population structure of human gut bacteria in a diverse cohort from rural Tanzania and Botswana

description: All supplementary tables are listed in Additional_File_2.xls. (XLSX 8380 kb)
DOI: 10.7284/125030
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN586 using a Northstar 952 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7612523
title: Additional file 1: of Investigating the virulence genes and antibiotic susceptibility patterns of Vibrio cholerae O1 in environmental and clinical isolates in Accra, Ghana

description: General physicochemical parameters (pH, Temperature, TDS and Conductivity) of water sources (RTF 80 kb)
DOI: 10.6084/m9.figshare.7612523.v1
title: Additional file 1: of Investigating the virulence genes and antibiotic susceptibility patterns of Vibrio cholerae O1 in environmental and clinical isolates in Accra, Ghana

description: General physicochemical parameters (pH, Temperature, TDS and Conductivity) of water sources (RTF 80 kb)
DOI: 10.17876/plate/dr.3/envelopes/109_87241
title: Digital object identifier (DOI) for the envelope 87241 in archive 109 from the APPLAUSE DR3