cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12881028.v4
title: Additional file of Transcriptome analyses based on genetic screens for Pax3 myogenic targets in the mouse embryo

description: Additional file of Transcriptome analyses based on genetic screens for Pax3 myogenic targets in the mouse embryo
DOI: 10.6084/m9.figshare.12881004
title: Additional file 2 of Transcriptome analyses based on genetic screens for Pax3 myogenic targets in the mouse embryo

description: Additional file 2:Tables S1-S3. In all tables, the probe name corresponds to the probe set designed by Affymetrix. In some cases, multiple probe sets correspond to the same transcript, the name of which is indicated in the gene title and gene symbol columns. When a probe set has not yet been annotated, a - sign has been assigned or the corresponding Riken number. The Fold change (FC) corresponds to the difference in signal intensities between Pax3PAX3-FKHR/GFP and Pax3GFP/+ embryos. This number is not on a logarithmic scale. The Adjusted (Adj) p-Value is also indicated. Table S1: Transcripts up-regulated (Table 1S-A) or down-regulated (Table 1S-B) in Pax3PAX3-FKHR/GFP (in comparison with Pax3GFP/+ embryos) in both forelimb and somite extracts. Table S2: Transcripts up-regulated (Table S2-A) or down-regulated (Table S2-B) in Pax3PAX3-FKHR/GFP (in comparison with Pax3GFP/+ samples) in forelimb buds. Table S3: Transcripts up-regulated (Table S3-A) or down-regulated (Table S3-B) in Pax3PAX3-FKHR/GFP (in comparison with Pax3GFP/+ samples) in somites. (XLS 136 KB)
DOI: 10.6084/m9.figshare.12881004.v1
title: Additional file 2 of Transcriptome analyses based on genetic screens for Pax3 myogenic targets in the mouse embryo

description: Additional file 2:Tables S1-S3. In all tables, the probe name corresponds to the probe set designed by Affymetrix. In some cases, multiple probe sets correspond to the same transcript, the name of which is indicated in the gene title and gene symbol columns. When a probe set has not yet been annotated, a - sign has been assigned or the corresponding Riken number. The Fold change (FC) corresponds to the difference in signal intensities between Pax3PAX3-FKHR/GFP and Pax3GFP/+ embryos. This number is not on a logarithmic scale. The Adjusted (Adj) p-Value is also indicated. Table S1: Transcripts up-regulated (Table 1S-A) or down-regulated (Table 1S-B) in Pax3PAX3-FKHR/GFP (in comparison with Pax3GFP/+ embryos) in both forelimb and somite extracts. Table S2: Transcripts up-regulated (Table S2-A) or down-regulated (Table S2-B) in Pax3PAX3-FKHR/GFP (in comparison with Pax3GFP/+ samples) in forelimb buds. Table S3: Transcripts up-regulated (Table S3-A) or down-regulated (Table S3-B) in Pax3PAX3-FKHR/GFP (in comparison with Pax3GFP/+ samples) in somites. (XLS 136 KB)
DOI: 10.6084/m9.figshare.12881007
title: Additional file 3 of Transcriptome analyses based on genetic screens for Pax3 myogenic targets in the mouse embryo

description: Additional file 3:Table S4. Transcripts that are specifically expressed in GFP positive muscle progenitor cells and that are not detected in the GFP negative population of the forelimb bud. This list of transcripts corresponds to myogenic progenitor cell markers. In this table, mean intensity, not fold change ((shown in Tables S1-3), is represented. (XLS 66 KB)
DOI: 10.6084/m9.figshare.12881010
title: Additional file 4 of Transcriptome analyses based on genetic screens for Pax3 myogenic targets in the mouse embryo

description: Additional file 4:Table S5. Sequence of reverse (Rev) and forward (Fwd) primers used for semi-quantitative and quantitative PCR. (XLS 34 KB)
DOI: 10.6084/m9.figshare.12881073.v6
title: Additional file of The venom composition of the parasitic wasp Chelonus inanitus resolved by combined expressed sequence tags analysis and proteomic approach

description: Additional file of The venom composition of the parasitic wasp Chelonus inanitus resolved by combined expressed sequence tags analysis and proteomic approach
DOI: 10.6084/m9.figshare.12881046
title: Additional file 1 of The venom composition of the parasitic wasp Chelonus inanitus resolved by combined expressed sequence tags analysis and proteomic approach

description: Additional file 1:Table of peptide identification. Peptidic sequences obtained from the nano-LC-MS/MS analysis of venom proteins from C. inanitus are shown in blue into the corresponding amino acid sequences encoded by ORFs obtained from the transcriptome analysis of C. inanitus venom glands. (XLS 16 KB)
DOI: 10.6084/m9.figshare.12881067.v1
title: Additional file 8 of The venom composition of the parasitic wasp Chelonus inanitus resolved by combined expressed sequence tags analysis and proteomic approach

description: Additional file 8:Sequence similarities between Ci-48a, Vem17 and Ci-80b and proteins similar to isoforms of lethal (1) G0193. Sequences similarities were determined by comparing the amino acid sequences of Ci-48a, Vem17 and Ci-80 to protein sequences deposited in NCBI nr database using BLASTP algorithm. The percentage of identity and E-value are given for each comparison. E: embryo; n.d.: not determined; n.s.: no significant similarity found (E-value&gt; 1e-04); SG: salivary gland; VG: venom gland. (XLS 10 KB)
DOI: 10.6084/m9.figshare.12881067
title: Additional file 8 of The venom composition of the parasitic wasp Chelonus inanitus resolved by combined expressed sequence tags analysis and proteomic approach

description: Additional file 8:Sequence similarities between Ci-48a, Vem17 and Ci-80b and proteins similar to isoforms of lethal (1) G0193. Sequences similarities were determined by comparing the amino acid sequences of Ci-48a, Vem17 and Ci-80 to protein sequences deposited in NCBI nr database using BLASTP algorithm. The percentage of identity and E-value are given for each comparison. E: embryo; n.d.: not determined; n.s.: no significant similarity found (E-value&gt; 1e-04); SG: salivary gland; VG: venom gland. (XLS 10 KB)
DOI: 10.6084/m9.figshare.12881046.v1
title: Additional file 1 of The venom composition of the parasitic wasp Chelonus inanitus resolved by combined expressed sequence tags analysis and proteomic approach

description: Additional file 1:Table of peptide identification. Peptidic sequences obtained from the nano-LC-MS/MS analysis of venom proteins from C. inanitus are shown in blue into the corresponding amino acid sequences encoded by ORFs obtained from the transcriptome analysis of C. inanitus venom glands. (XLS 16 KB)
DOI: 10.6084/m9.figshare.12881073.v13
title: Additional file of The venom composition of the parasitic wasp Chelonus inanitus resolved by combined expressed sequence tags analysis and proteomic approach

description: Additional file of The venom composition of the parasitic wasp Chelonus inanitus resolved by combined expressed sequence tags analysis and proteomic approach
DOI: 10.6084/m9.figshare.12881163.v1
title: Additional file of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae
DOI: 10.6084/m9.figshare.12881163.v11
title: Additional file of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae
DOI: 10.6084/m9.figshare.12881163.v15
title: Additional file of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae
DOI: 10.6084/m9.figshare.12881103
title: Additional file 10 of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file 10:Rivera-Ruiz, Rodríguez-Quiñones, Akamine, and Rodríguez-Medina. Table of genes regulated by transcription or degradation ≥ 2-fold (p ≤ 0.01) in myo1Δ and ESR [9] sorted according to biological process and cluster frequency. (XLSX 72 KB)
DOI: 10.6084/m9.figshare.12881103.v1
title: Additional file 10 of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file 10:Rivera-Ruiz, Rodríguez-Quiñones, Akamine, and Rodríguez-Medina. Table of genes regulated by transcription or degradation ≥ 2-fold (p ≤ 0.01) in myo1Δ and ESR [9] sorted according to biological process and cluster frequency. (XLSX 72 KB)
DOI: 10.6084/m9.figshare.12881133
title: Additional file 1 of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file 1:Rivera-Ruiz, Rodríguez-Quiñones, Akamine, and Rodríguez-Medina. Table of 25 biological process categories referenced by Osprey: Network Visualization System and used for GSEA in this study. (XLS 20 KB)
DOI: 10.6084/m9.figshare.12881163.v16
title: Additional file of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae
DOI: 10.6084/m9.figshare.12881145
title: Additional file 4 of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file 4:Rivera-Ruiz, Rodríguez-Quiñones, Akamine, and Rodríguez-Medina. Table of post-transcriptionally regulated mRNAs (p≤0.01) in myo1Δ strains divided according to biological process categories. All differentially expressed genes are identified with their corresponding GO annotations, log2-transformed fold change ratios, and p-values. (XLS 303 KB)
DOI: 10.6084/m9.figshare.12881148
title: Additional file 5 of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file 5:Rivera-Ruiz, Rodríguez-Quiñones, Akamine, and Rodríguez-Medina. Table of co-regulated genes that exhibited regulation in both global expression [6] and post-transcriptional expression studies. These co-regulated genes have been identified with their corresponding GO annotations, log2-transformed fold change ratios, and p-values. (XLS 44 KB)
DOI: 10.6084/m9.figshare.12881151
title: Additional file 6 of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file 6:Rivera-Ruiz, Rodríguez-Quiñones, Akamine, and Rodríguez-Medina. Table of differentially regulated mRNAs related to cell wall biogenesis in myo1Δ strains at the post-transcriptional level with log2-transformed fold change ratios (p≤ 0.01). (XLS 26 KB)
DOI: 10.6084/m9.figshare.12881154
title: Additional file 7 of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file 7:Rivera-Ruiz, Rodríguez-Quiñones, Akamine, and Rodríguez-Medina. Table of genes regulated by transcription or degradation [from Supplementary file 1, reference 6] that were regulated ≥ 2-fold (p ≤ 0.01) in myo1Δ and ESR [9]. (XLS 50 KB)
DOI: 10.6084/m9.figshare.12881160
title: Additional file 9 of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file 9:Rivera-Ruiz, Rodríguez-Quiñones, Akamine, and Rodríguez-Medina. Significantly regulated ribosome-associated mRNAs (p ≤ 0.01) regulated exclusively by translation in myo1Δ and ESR [10]. (XLS 106 KB)
DOI: 10.6084/m9.figshare.12881163
title: Additional file of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae
DOI: 10.6084/m9.figshare.12881163.v17
title: Additional file of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae
DOI: 10.6084/m9.figshare.12881163.v18
title: Additional file of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae
DOI: 10.6084/m9.figshare.12881133.v1
title: Additional file 1 of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file 1:Rivera-Ruiz, Rodríguez-Quiñones, Akamine, and Rodríguez-Medina. Table of 25 biological process categories referenced by Osprey: Network Visualization System and used for GSEA in this study. (XLS 20 KB)
DOI: 10.6084/m9.figshare.12881157
title: Additional file 8 of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file 8:Rivera-Ruiz, Rodríguez-Quiñones, Akamine, and Rodríguez-Medina. Table of co-regulated genes derived from Supplementary Table S2 that were regulated ≥ 2-fold (p ≤ 0.01) in myo1Δ and ESR [9]. (XLS 40 KB)
DOI: 10.6084/m9.figshare.12881145.v1
title: Additional file 4 of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file 4:Rivera-Ruiz, Rodríguez-Quiñones, Akamine, and Rodríguez-Medina. Table of post-transcriptionally regulated mRNAs (p≤0.01) in myo1Δ strains divided according to biological process categories. All differentially expressed genes are identified with their corresponding GO annotations, log2-transformed fold change ratios, and p-values. (XLS 303 KB)
DOI: 10.6084/m9.figshare.12881151.v1
title: Additional file 6 of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file 6:Rivera-Ruiz, Rodríguez-Quiñones, Akamine, and Rodríguez-Medina. Table of differentially regulated mRNAs related to cell wall biogenesis in myo1Δ strains at the post-transcriptional level with log2-transformed fold change ratios (p≤ 0.01). (XLS 26 KB)
DOI: 10.6084/m9.figshare.12881148.v1
title: Additional file 5 of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file 5:Rivera-Ruiz, Rodríguez-Quiñones, Akamine, and Rodríguez-Medina. Table of co-regulated genes that exhibited regulation in both global expression [6] and post-transcriptional expression studies. These co-regulated genes have been identified with their corresponding GO annotations, log2-transformed fold change ratios, and p-values. (XLS 44 KB)
DOI: 10.6084/m9.figshare.12881154.v1
title: Additional file 7 of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file 7:Rivera-Ruiz, Rodríguez-Quiñones, Akamine, and Rodríguez-Medina. Table of genes regulated by transcription or degradation [from Supplementary file 1, reference 6] that were regulated ≥ 2-fold (p ≤ 0.01) in myo1Δ and ESR [9]. (XLS 50 KB)
DOI: 10.6084/m9.figshare.12881160.v1
title: Additional file 9 of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file 9:Rivera-Ruiz, Rodríguez-Quiñones, Akamine, and Rodríguez-Medina. Significantly regulated ribosome-associated mRNAs (p ≤ 0.01) regulated exclusively by translation in myo1Δ and ESR [10]. (XLS 106 KB)
DOI: 10.6084/m9.figshare.12881163.v20
title: Additional file of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae
DOI: 10.6084/m9.figshare.12881157.v1
title: Additional file 8 of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file 8:Rivera-Ruiz, Rodríguez-Quiñones, Akamine, and Rodríguez-Medina. Table of co-regulated genes derived from Supplementary Table S2 that were regulated ≥ 2-fold (p ≤ 0.01) in myo1Δ and ESR [9]. (XLS 40 KB)
DOI: 10.6084/m9.figshare.12881163.v19
title: Additional file of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae

description: Additional file of Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae
DOI: 10.6084/m9.figshare.7942550
title: Aspects of reproduction and sexual dimorphism of Lygophis flavifrenatus (Dipsadidae: Xenodontinae)

description: ABSTRACT Lygophis flavifrenatus Cope, 1862 is a terrestrial dispsadid distributed in subtropical Brazil, Paraguay, Uruguay, and Argentina. Herein, we present data on sexual dimorphism and reproductive biology of this very poorly studied species. A total of 108 specimens (55 females, 50 males, three hatchlings with unidentified sex) from Brazilian states of Rio Grande do Sul, Santa Catarina and Mato Grosso do Sul were analyzed. Sexual dimorphism by size, body dimensions (tail length, head length, head width) and a number of ventral and subcaudal scales is not well marked in the species. Mature females attain the greater size and have a higher number of ventral scales than mature males. Mature males, in turn, presented longer tail, longer and wider head and a higher number of subcaudal scales. Meanwhile, marked overlaps were observed in ranges of all body dimensions proportions and a number of ventral and subcaudal scales. Females attained sexual maturity at a greater size than males. The smallest mature female showed snout-vent length (SVL) = 402 mm while the smallest mature male presented SVL = 285 mm. Females presented a seasonal reproductive cycle, with advanced stages (advanced development of secondary follicles and development of eggs) occurring in late winter and spring. Hatchlings were found in late summer. It is supposed that only one clutch is laid per cycle, considering that the great majority of secondary follicles found in females carrying eggs were irregular or lamellar shaped (possibly atresic). Clutch sizes varied from 6 to 12 eggs (mean = 8.2) and presented a tendency for positive correlation with progenitors SVL. The present study adds new information to the knowledge about the natural history of snakes from subtropical Neotropics.
DOI: 10.6084/m9.figshare.7942553.v1
title: Crane flies (Diptera, Tipuloidea) from southern Neotropical salt marshes: survey with DNA barcoding

description: ABSTRACT Crane flies are the most diverse group within Diptera, but they are rarely studied in coastal ecosystems. Considering the scarcity of information on the biology and ecology of this group in the Neotropics, and the sparse literature available for taxonomic identification, we developed a descriptive checklist that incorporates morphology and DNA barcoding. We also created a generic identification key for crane flies of southern Brazilian salt marshes. We sampled crane flies continuously at three areas along the Patos Lagoon salt marshes over one year. A total of 14 genera/subgenera, 6 species, and 12 morphotypes belonging to Limoniidae and Tipulidae were identified. Distribution ranges of Symplecta cana (Walker, 1848) and two Ormosia Rondani, 1856 species were expanded. mtDNA COI sequences were compared to the BOLD and NCBI databases, but were matched only at the family level. Therefore, we provided sequences to both platforms, updated to the genus level. We found low (0.00-0.03) intraspecific and high (0.11-0.25) interspecific molecular differences indicating that the mtDNA COI region is adequate for distinguishing species within the Tipuloidea. The Dicranomyia Stephens, 1829 species complex showed low genetic difference, indicating that they could be one species with high morphological plasticity. This study will serve as a basis for future research on insects of Neotropical salt marshes.
DOI: 10.6084/m9.figshare.7942562.v1
title: Justifying Geometrical Generalizations in Elementary School Preservice Teacher Education

description: Abstract This article is part of a teacher education experience implemented in Portugal with future teachers and educators of the 2nd year of a basic education degree, in which they have produced evidence of justifications of generalizations in a context of exploratory teaching. The study aims to understand how they justify generalizations about families of geometric figures. Data were collected by audio and video records and from the participants’ written productions, focusing on arguments used to justify generalizations about families of figures. In the analysis, special attention was given to the kind of arguments, its generality degree, the difficulties expressed and the aspects that have promoted the learning of this process. The results show that the participants had some difficulties in building justifications, in part by the lack of understanding about the justification nature. Initially, they expressed difficulties with the study object (a family of figures instead of a unique figure) and difficulties in fully providing arguments and their discourse was mainly based on specific cases. The association of justification to investigate the generalization, as well as the nature and the careful task design and classroom interaction may promote the improvement of justifications.
DOI: 10.6084/m9.figshare.7942544
title: Composition and species richness of the community of Coleoptera (Insecta) in the Caatinga

description: ABSTRACT The beetles present great taxonomic and functional diversity; however, in the Northeast region of Brazil, especially in the semiarid Caatinga region, the knowledge on the Coleoptera fauna is very restricted. Because the Caatinga presents different landscapes, it is important to survey the coleopterofauna in the different phytophysiognomies, seeking to encompass a spatial variability found in this xeric region. Therefore, the objective of this study was to perform a survey of beetles in the semiarid region of Paraíba state, Northeast Brazil. We collected weekly during four years (2009-2013) using Malaise traps in two phytophysiognomies, an area with xerophytic vegetation and another with riparian forest. A total of 6,567 individuals belonging to 383 species and 42 families of Coleoptera were sampled. Chrysomelidae (78 spp.), Curculionidae (57 spp.), and Cerambycidae (28 spp.) had a higher richness, while Chrysomelidae (30.4% of individuals), Curculionidae (8.3%), and Tenebrionidae (7.7%) were the most abundant. A large number of singletons and doubletons were collected despite the long sampling period, indicating that there must be much more species to be recorded. Our results demonstrate a rich fauna of beetles in the studied region. We provide a list of occurring beetles with new records of species for the Paraíba state and thus contribute to the knowledge of the diversity of the Coleoptera in the Northeast Brazil.
DOI: 10.6084/m9.figshare.7942547
title: Does Diachasmimorpha longicaudata (Hymenoptera: Braconidae) have a preferential instar to parasitize Tephritidae (Diptera)?

description: ABSTRACT Diachasmimorpha longicaudata (Ashmead, 1905) is a koinobiont parasitoid of Tephritidae larvae, the third instar larvae of which is considered preferential, but it is able to parasitize other larval stages and compete with native parasitoids. This study investigated the preference and parasitism capacity of D. longicaudata in larvae of different instar of Anastrepha fraterculus (Wiedemann, 1830) (AF) and Ceratitis capitata (Wiedemann, 1824) (CC). The experiments were carried out under laboratory conditions, one instar being offered at a time in parasitism units, with the following choices among the hosts: 25 AF larvae and 25 CC larvae (first, second and third instar were evaluated). The other test was a multiple-choice in relation to the instar, for larvae of the same host species, with three parasitism units being offered, with 15 larvae of each instar. The mean number of formed pupae, emerged parasitoids, parasitized pupae, unviable pupae and sex ratio were evaluated. In the first bioassay, the mean number of emerged parasitoids and parasitized pupae in the AF host were significantly higher in treatments with first and second instar larvae. For CC there was no difference between the instars tested. In the second bioassay, the mean value of emerged parasitoids and parasitized pupae, was higher in second and third instar larvae for CC, and for AF was in second instar larvae. The sex ratio was biased for males in all treatments in both bioassays. The results show that D. longicaudata can parasitize and be successful in all available larval instars, being able to compete with parasitoids of any instar.