cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18132538
title: Fine-mapping results for the EstBB-UKBB NMR metabolic trait meta-analysis

description: Files contained in this repository:



UKBB_EUR_fine_mapping_with_meta_EUR_lead_variants.parquet - main table with all fine mapped credible sets.

UKBB_EUR_fine_mapping_missense_snps.tsv.gz - missense variants among the credible set variants (indentified by Ensembl VEP).

UKBB_EUR_fine_mapping_splicing_predictions.tsv.gz - SpliceAI and AlphaGenome predictions for all credible set variants.

UKBB_EUR_annotated_high_PIP_variants.tsv.gz - filtered list of PIP > 0.8 variants and credible sets to which they belong, annotated with missense and splicing predictions.


Column names of for the fine mapping results (UKBB_EUR_fine_mapping_with_meta_EUR_lead_variants.parquet)



molecular_trait_id - name of metabolic trait

region - region in which the credible set variants are situated

variant - variant in credible set

chromosome - chromosome

position - position (GRCh38)

ref - reference allele

alt - alternative allele

maf - minor allele frequency in UKBB_EUR cohort

cs_id - credible set ID

cs_index - credible set index

alpha1 - point estimate of causal effect for signal 1

alpha2 - point estimate of causal effect for signal 2

alpha3 - point estimate of causal effect for signal 3

alpha4 - point estimate of causal effect for signal 4

alpha5 - point estimate of causal effect for signal 5

alpha6 - point estimate of causal effect for signal 6

alpha7 - point estimate of causal effect for signal 7

alpha8 - point estimate of causal effect for signal 8

alpha9 - point estimate of causal effect for signal 9

alpha10 - point estimate of causal effect for signal 10

pip - posterior inclusion probability

z - Z-score
DOI: 10.21233/njr6-m535
title: Succor Creek flora, Devils Gate locality pollen dataset

description: Raw data for the Succor Creek flora, Devils Gate locality pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/pmgy-9g06
title: Peabody diatom surface sample dataset

description: Raw data for the Peabody diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/8pem-dt14
title: Pitcher diatom surface sample dataset

description: Raw data for the Pitcher diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/ey4z-wg54
title: Plunkett diatom surface sample dataset

description: Raw data for the Plunkett diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/afrx-sv19
title: Porter diatom surface sample dataset

description: Raw data for the Porter diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/z6zy-9g55
title: BP050087 (Brown Bank Quest) X-ray fluorescence (XRF) dataset

description: Raw data for the BP050087 (Brown Bank Quest) X-ray fluorescence (XRF) dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.13012/b2idb-6196616_v1
title: Data for "Photoinduced Chemomimetic Biocatalysis for Enantioselective Intermolecular Radical Conjugate Addition"

description: Exploiting nature’s catalysts for non-natural transformations that are inaccessible to chemocatalysis is highly desirable but challenging. On the one hand, the widespread nicotinamide-dependent oxidoreductases have not been utilized for single-electron-transfer-induced bimolecular cross-couplings; on the other, the addition of catalytic asymmetric radical conjugate to terminal alkenes remains a challenge owing to strong racemic background reaction and unselective termination of prochiral radical species. Here we report a chemomimetic biocatalysitic approach for construction of alpha-carbonyl stereocentres via an unnatural intermolecular conjugate addition of N-(acyloxy)phthalimides-derived radicals with acceptor-substituted terminal alkenes, by combination of visible-light excitation and nicotinamide-dependent ketoreductases (KREDs). Based on protein crystal structure, we engineered KREDs via a semi-rational mutagenesis strategy to improve reaction outcomes with a small and high-quality variants library. Mechanistic investigations combining wet experiments, crystallographic studies and computational simulations demonstrate that the repurposed biocatalyst can suppress racemic background reaction and unselected side reactions, yielding enantioselectivity that is challenging to achieve by chemocatalysis.
DOI: 10.21233/vq97-1s94
title: BP050087 (Brown Bank Quest) pollen dataset

description: Raw data for the BP050087 (Brown Bank Quest) pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/js4f-3b34
title: Poca diatom surface sample dataset

description: Raw data for the Poca diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.w3ybkf
title: Occurrence Download

description: A dataset containing 464169 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cracticus nigrogularis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-180 -90, 180 -90, 180 90, -180 90, -180 -90))"
 ]
}

 The dataset includes 464169 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012545-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6bvxzv
title: Occurrence Download

description: A dataset containing 134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Squalius cephalus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1960",
 "Year is less than or equal to 1964"
 ]
}

 The dataset includes 134 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012582-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/ssn6-zs13
title: Hodgdon Pond diatom surface sample dataset

description: Raw data for the Hodgdon Pond diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/qtxe-dk89
title: Loon Pond diatom surface sample dataset

description: Raw data for the Loon Pond diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/s05p-z671
title: Loon Pond diatom surface sample dataset

description: Raw data for the Loon Pond diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/bhqg-b168
title: San Clemente Island vertebrate fauna dataset

description: Raw data for the San Clemente Island vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/b0wz-3343
title: Santa Catalina Island vertebrate fauna dataset

description: Raw data for the Santa Catalina Island vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/me35-pv35
title: Poverty diatom surface sample dataset

description: Raw data for the Poverty diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.jp8psu
title: Occurrence Download

description: A dataset containing 661185 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-93.13078 2.5892,-93.10326 -2.79572,-87.34222 -2.89663,-87.47065 2.60754,-93.13078 2.5892))",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 661185 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012538-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/5609-g518
title: Puffers diatom surface sample dataset

description: Raw data for the Puffers diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/p6ky-zh51
title: Rangeley diatom surface sample dataset

description: Raw data for the Rangeley diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/2z5k-2t63
title: Sabattus diatom surface sample dataset

description: Raw data for the Sabattus diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/dehm-kj89
title: Sand diatom surface sample dataset

description: Raw data for the Sand diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/5590-nq88
title: Canton/An. diatom surface sample dataset

description: Raw data for the Canton/An. diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/mevw-4x06
title: Scituate diatom surface sample dataset

description: Raw data for the Scituate diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/smd5-e473
title: Scraggly diatom surface sample dataset

description: Raw data for the Scraggly diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/11f8-vb79
title: Second diatom surface sample dataset

description: Raw data for the Second diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/4bba-y577
title: Second Roach Pond diatom surface sample dataset

description: Raw data for the Second Roach Pond diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/7jtd-ey08
title: Shagg diatom surface sample dataset

description: Raw data for the Shagg diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/sa7k-8p26
title: Sheepscott diatom surface sample dataset

description: Raw data for the Sheepscott diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/r4b3-2k29
title: Spectacle diatom surface sample dataset

description: Raw data for the Spectacle diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/34w6-tv44
title: St. George Lake diatom surface sample dataset

description: Raw data for the St. George Lake diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/320c-kv14
title: Thompson diatom surface sample dataset

description: Raw data for the Thompson diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/ft6c-3m80
title: Thompson (R) diatom surface sample dataset

description: Raw data for the Thompson (R) diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.6n6sxb
title: Occurrence Download

description: A dataset containing 339 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Squalius cephalus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1965",
 "Year is less than or equal to 1969"
 ]
}

 The dataset includes 339 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012583-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/ygjw-2987
title: China Lake diatom surface sample dataset

description: Raw data for the China Lake diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/g2fn-mc72
title: Tyler diatom surface sample dataset

description: Raw data for the Tyler diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/41p8-sx31
title: Unity Pond diatom surface sample dataset

description: Raw data for the Unity Pond diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/ct0d-m429
title: Upper Shin Pond diatom surface sample dataset

description: Raw data for the Upper Shin Pond diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/wwkg-5x54
title: Wards diatom surface sample dataset

description: Raw data for the Wards diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5066/f7jd4tx8
title: Geochemical and geochronologic data from the Hall Creek caldera, Toiyabe Range, Nevada

description: The magmatic, tectonic, and topographic evolution of what is now the northern Great Basin remains controversial, notably the temporal and spatial relation between magmatism and extensional faulting. This controversy is exemplified in the northern Toiyabe Range of central Nevada, where previous geologic mapping suggested the presence of a caldera that sourced the late Eocene (34.0 mega-annum [Ma]) tuff of Hall Creek. This region was also inferred to be the locus of large-magnitude middle Tertiary extension (more than 100 percent strain) localized along the Bernd Canyon detachment fault, and to be the approximate location of a middle Tertiary paleodivide that separated east and west-draining paleovalleys. Geologic mapping, 40Ar/39Ar dating, and geochemical analyses document the geologic history and extent of the Hall Creek caldera, define the regional paleotopography at the time it formed, and clarify the timing and kinematics of post-caldera extensional faulting. During and after late Eocene volcanism, the northern Toiyabe Range was characterized by an east-west trending ridge in the area of present-day Mount Callaghan, probably localized along a Mesozoic anticline. Andesite lava flows erupted around 3534 Ma ponded hundreds of meters thick in the erosional low areas surrounding this structural high, particularly in the Simpson Park Mountains. The Hall Creek caldera formed ca. 34.0 Ma during eruption of the approximately 400 cubic kilometers (km3) tuff of Hall Creek, a moderately crystal-rich rhyolite (7177 percent SiO2) ash-flow tuff. Caldera collapse was piston-like with an intact floor block, and the caldera filled with thick (approximately 2,600 meters) intracaldera tuff and interbedded breccia lenses shed from the caldera walls. The most extensive exposed megabreccia deposits are concentrated on or close to the caldera floor in the southwestern part of the caldera. Both silicic and intermediate post-caldera lavas were locally erupted within 400 thousand years of the main eruption, and for the next approximately 10 million years sedimentary rocks and distal tuffs sourced from calderas farther west ponded in the caldera basin surrounding low areas nearby. Patterns of tuff deposition indicate that the area was characterized by east-west trending paleovalleys and ridges in the late Eocene and Oligocene, which permitted tuffs to disperse east-west but limited their north-south extent. Although a low-angle fault contact of limited extent separates Cambrian and Ordovician strata in the southwestern part of the study area, there is no evidence that this fault cuts overlying Tertiary rocks. Total extensional strain across the caldera is on the order of 15 percent, and there is no evidence for progressive tilting of 3425 Ma rocks that would indicate protracted EoceneOligocene extension. The caldera appears to have been tilted as an intact block after 25 Ma, probably during the middle Miocene extensional faulting well documented to the north and south of the study area.