cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5478049.v2
title: Charakterystyka przedsięwzięć finansowanych z funduszy europejskich realizowanych w powiecie chojnickim i Gminie Miejskiej Chojnice w latach 2004–2013

description: W niniejszym artykule dokonano podsumowania zakresu inwestycji zrealizowanych dzięki środkom unijnym w powiecie chojnickim i Gminie Miejskiej Chojnice w latach 2004–2013 (stan realizacji: październik 2015). W obrębie tak przyjętej typologii przeanalizowano 397 projektów za pomocą analizy porównawczej, dzięki czemu oszacowano, iż łączna ich wartość projektów zatwierdzonych do realizacji wyniosła 1,03 mld zł, z czego 597,75 mln zł stanowiło dofinansowanie UE. Wkład budżetu państwa do wskazanych inwestycji to 105,48 mln zł, co oznacza, że 326,88 mln zł to środki stanowiące wkład własny beneficjentów z terenu powiatu chojnickiego. The following article summarizes the scope of the investments made thanks to the EU funds in the Chojnice County and Chojnice Municipality in the years 2004-2013 (state of implementation as at: October 2015). Within such a typology we have analyzed 397 projects through a comparative analysis, and it has been estimated that the total value of projects approved for implementation amounted to 1.03 billion PLN, of which 597.75 million PLN was provided from the EU financial support. The contribution of the state budget to the indicated investment is 105.48 million PLN, which means that 326.88 million PLN is the own contribution of beneficiaries from the Chojnice County.<br>Publisher: A. Finster, J. Knopek (red.)Organization: Urząd Miejski w ChojnicachPublication Date: 2015Publication Name: 25 LAT SAMORZĄDU TERYTORIALNEGO. POLSKA - POMORZE - CHOJNICE
DOI: 10.6084/m9.figshare.5477932
title: Personality traits in companion dogs—Results from the VIDOPET

description: This database contains the raw data of the Vienna Dog Personality Test (VIDOPET) performed on 217 pet border collies. The test consists of 15 situations, the dogs’ behaviour during the test was evaluated using both video coding and video rating methods, and additionally the participating owners filled in a personality questionnaire about their dogs. The coded data were subjected to a two-step data reduction procedure (principal component analysis on each subtest followed by an exploratory factor analysis on the subtest components), which yielded five factors: Sociability-obedience, Activity-independence, Novelty seeking, Problem orientation, and Frustration tolerance. The reliability analyses of these factors included assessment of internal consistency, intra-observer, inter-observer, and test-retest reliability, as well as reliability between experimenters and test locations. The construct validity of the test was investigated by analysing the correlations between the results of the video coding, video rating, and the owners’ questionnaire assessment.
DOI: 10.6084/m9.figshare.5477899
title: Simulation of potential dispersal for Laminaria ochroleuca

description: Past climate changes and strong oceanographic barriers structured low latitude genetic relics for the golden kelp Laminaria ochroleuca<br>Animation showing a simulation of potential dispersal running for the year 2012. Random release cells (in different colors) were chosen to better illustrate the path of individual particles
DOI: 10.6084/m9.figshare.5477902
title: Supplementary Material for: Mirror Artifacts in Obstetric Ultrasound: Case Presentation of a Ghost Twin during the Second-Trimester Ultrasound Scan

description: Mirror artifacts are produced by the reflection of ultrasound waves after they propagate through a structure and encounter a strong and smooth interface capable of acting as a mirror. Ultrasound waves bounce back and forth between the mirroring interface and the reflective object and then eventually return to the transducer. The typical display of the mirror artifact consists of two similar structures separated and at similar distances from the reflective interface. We report a mirror artifact in a patient with a singleton gestation at 18 weeks. The image was interpreted as consistent with a twin gestation using transabdominal and transvaginal ultrasound. The differential diagnosis consisted of an abdominal heterotopic pregnancy. The presence of synchronized but opposite movements of both fetuses, and the blurred image of the second fetus, suggested a mirror artifact. The reflective surface was created by the interface located between a distended rectosigmoid filled with gas and the posterior uterine wall. Mirror artifacts can lead to diagnostic errors. This case illustrates how a distended rectosigmoid colon can generate an image that simulates either a twin gestation or an abdominal heterotopic pregnancy.
DOI: 10.6084/m9.figshare.5477932.v1
title: The VIDOPET– A reliable and valid assessment of personality in pet dogs (Canis familiaris)

description: This database contains the raw data of the Vienna Dog Personality Test (VIDOPET) performed on 217 pet border collies. The test consists of 15 situations, the dogs’ behaviour during the test was evaluated using both video coding and video rating methods, and additionally the participating owners filled in a personality questionnaire about their dogs. The coded data were subjected to a two-step data reduction procedure (principal component analysis on each subtest followed by an exploratory factor analysis on the subtest components), which yielded five factors: Sociability-obedience, Activity-independence, Novelty seeking, Problem orientation, and Frustration tolerance. The reliability analyses of these factors included assessment of internal consistency, intra-observer, inter-observer, and test-retest reliability, as well as reliability between experimenters and test locations. The construct validity of the test was investigated by analysing the correlations between the results of the video coding, video rating, and the owners’ questionnaire assessment.
DOI: 10.6084/m9.figshare.5477890
title: XRF whole-rock major (wt%) and trace (µg/g) element data and CIPW norm calculations. Multiple intrusive phases in the Leinster Batholith, Ireland: geochronology, isotope geochemistry and constraints on the deformation history

description: Table S1: XRF whole-rock major (wt%) and trace (µg/g) element data and CIPW norm calculations from the granites at Glenmacnass Waterfall.
DOI: 10.6084/m9.figshare.5477884
title: Ion-microprobe zircon oxygen isotopic data. Multiple intrusive phases in the Leinster Batholith, Ireland: geochronology, isotope geochemistry and constraints on the deformation history

description: Table S3: Ion-microprobe zircon oxygen isotopic data for the granites from Glenmacnass Waterfall.
DOI: 10.6084/m9.figshare.5477887
title: LA–MC–ICPMS K-feldspar Pb isotopic data. Multiple intrusive phases in the Leinster Batholith, Ireland: geochronology, isotope geochemistry and constraints on the deformation history

description: Table S5: LA–MC–ICPMS K-feldspar Pb isotopic data for the granites from Glenmacnass Waterfall.
DOI: 10.6084/m9.figshare.5477890.v1
title: XRF whole-rock major (wt%) and trace (µg/g) element data and CIPW norm calculations. Multiple intrusive phases in the Leinster Batholith, Ireland: geochronology, isotope geochemistry and constraints on the deformation history

description: Table S1: XRF whole-rock major (wt%) and trace (µg/g) element data and CIPW norm calculations from the granites at Glenmacnass Waterfall.
DOI: 10.6084/m9.figshare.5477881
title: Ion-microprobe zircon U–Pb data. Multiple intrusive phases in the Leinster Batholith, Ireland: geochronology, isotope geochemistry and constraints on the deformation history

description: Table S2: Ion-microprobe zircon U–Pb data for the granites from Glenmacnass Waterfall.
DOI: 10.6084/m9.figshare.5477884.v1
title: Ion-microprobe zircon oxygen isotopic data. Multiple intrusive phases in the Leinster Batholith, Ireland: geochronology, isotope geochemistry and constraints on the deformation history

description: Table S3: Ion-microprobe zircon oxygen isotopic data for the granites from Glenmacnass Waterfall.
DOI: 10.6084/m9.figshare.5477887.v1
title: LA–MC–ICPMS K-feldspar Pb isotopic data. Multiple intrusive phases in the Leinster Batholith, Ireland: geochronology, isotope geochemistry and constraints on the deformation history

description: Table S5: LA–MC–ICPMS K-feldspar Pb isotopic data for the granites from Glenmacnass Waterfall.
DOI: 10.6084/m9.figshare.5477878
title: LA–MC–ICPMS zircon Lu–Hf isotopic data. Multiple intrusive phases in the Leinster Batholith, Ireland: geochronology, isotope geochemistry and constraints on the deformation history

description: Table S4: LA–MC–ICPMS zircon Lu–Hf isotopic data for the granites from Glenmacnass Waterfall.
DOI: 10.6084/m9.figshare.5477881.v1
title: Ion-microprobe zircon U–Pb data. Multiple intrusive phases in the Leinster Batholith, Ireland: geochronology, isotope geochemistry and constraints on the deformation history

description: Table S2: Ion-microprobe zircon U–Pb data for the granites from Glenmacnass Waterfall.
DOI: 10.6084/m9.figshare.5477818
title: Supplementary Material for: Clearance of Selected Plasma Cytokines with Continuous Veno-Venous Hemodialysis Using Ultraflux EMiC2 versus Ultraflux AV1000S

description: <b><i>Background:</i></b> High cutoff hemofilters might support the restoration of immune homeostasis in systemic inflammation by depleting inflammatory mediators from the circulation. <b><i>Methods:</i></b> Interleukin (IL)-6, IL-8, IL-10, and tumor necrosis factor-alpha depletion was assessed in 30 sepsis patients with acute renal failure using continuous veno-venous hemodialysis with high cutoff versus standard filters (CVVHD-HCO vs. CVVHD-STD) over 48 h. <b><i>Results:</i></b> The transfer of IL-6 and IL-8 was significantly higher for CVVHD-HCO, as shown by increased IL-6 and IL-8 effluent concentrations. The mean plasma cytokine concentrations decreased over time for all cytokines without detectable differences for the treatment modalities. No transfer of albumin was observed for either of the filters. C-reactive protein remained stable over time and did not differ between CVVHD-HCO and CVVHD-STD, while procalcitonin decreased significantly over 48 h for both treatment modalities. <b><i>Conclusion:</i></b> CVVHD-HCO achieved enhanced removal of IL-6 and IL-8 as compared to CVVHD-STD, without differentially reducing plasma cytokine levels.
DOI: 10.6084/m9.figshare.5477746
title: Supermatrices

description: Supermatrices as the corresponding partition model files used for concatenation-based species tree inferences.
DOI: 10.6084/m9.figshare.5477749
title: Single-gene alignments

description: Alignments used for single-gene tree inference.
DOI: 10.6084/m9.figshare.5477737
title: Single-gene trees

description: Single-gene trees in newick format. Each data set has at least eight sets of trees, seven of which were produced by the seven examined strategies, and the eighth one corresponded to the "best-observed" trees. Some data sets also have an additional set of trees consisting of previously reported trees from the original studies. For protein data sets, best-fit models used in phylogenetic analyses are also provided for all alignments.
DOI: 10.6084/m9.figshare.5477734
title: Coalescent-based species trees

description: Coalescent-based species trees in newick format. Each data set has at least eight coalescent-based species trees, seven of which were based on single-gene trees produced by the five examined strategies, and the eighth one was based on the “best-observed” trees.
DOI: 10.6084/m9.figshare.5477728
title: Concatenation-based species trees

description: Concatenation-based species trees in newick format. Each data set typically has four trees, including the previously reported tree, as well as the trees inferred by RAxML, IQ-TREE, and FastTree. Trees generated by independent RAxML searches (i.e. from independent starting trees) and by replicate IQ-TREE analyses are also included.
DOI: 10.6084/m9.figshare.5477734.v1
title: Coalescent-based species trees

description: Coalescent-based species trees in newick format. Each data set has at least eight coalescent-based species trees, seven of which were based on single-gene trees produced by the five examined strategies, and the eighth one was based on the “best-observed” trees.
DOI: 10.6084/m9.figshare.5477698
title: LUC_ASB.zip

description: We provide a remote-sensing based map of abandoned and recultivated croplands in the ASB to support land resource management and decision making. We produced, validated and made publically available such map by using 250-m time series from the MODIS Terra and Aqua satellites for the period 2003–2016. It entails information about agricultural LUC (cropland abandonment and recultivation).<br>
DOI: 10.6084/m9.figshare.5477701
title: 80c Compile.xlsx

description: Peak hold for 7wt% waste activated sludge at 80 °C.
DOI: 10.6084/m9.figshare.5477698.v1
title: LUC_ASB.zip

description: We provide a remote-sensing based map of abandoned and recultivated croplands in the ASB to support land resource management and decision making. We produced, validated and made publically available such map by using 250-m time series from the MODIS Terra and Aqua satellites for the period 2003–2016. It entails information about agricultural LUC (cropland abandonment and recultivation).<br>
DOI: 10.6084/m9.figshare.5477701.v2
title: 80c Compile.xlsx

description: Peak hold for 7wt% waste activated sludge at 80 °C.
DOI: 10.6084/m9.figshare.5477701.v1
title: 80c Compile.xlsx

description: Peak hold for 7wt% waste activated sludge at 80 °C
DOI: 10.6084/m9.figshare.5477479
title: Table S5 - Antimicrobial resistance gene analysis

description: Detailed results of antimicrobial resistance gene analysis. Combined BLAST and SRST2 results for each gene examined. Includes gene location (scaffold in sample genome assembly; only for BLAST), % identity and % coverage.
DOI: 10.6084/m9.figshare.5477476
title: Table S4 - Virulence gene analysis

description: Detailed results of virulence gene analysis. Combined BLAST and SRST2 results for each gene examined. Includes gene location (scaffold in sample genome assembly; only for BLAST), % identity and % coverage.
DOI: 10.6084/m9.figshare.5477473
title: Table S3 - Virulence gene summary

description: Summary of the presence/absence of each virulence-associated gene included in the virulence gene analysis. Genes included in this analysis are listed after each gene family.
DOI: 10.6084/m9.figshare.5477479.v1
title: Table S5 - Antimicrobial resistance gene analysis

description: Detailed results of antimicrobial resistance gene analysis. Combined BLAST and SRST2 results for each gene examined. Includes gene location (scaffold in sample genome assembly; only for BLAST), % identity and % coverage.
DOI: 10.6084/m9.figshare.5477473.v1
title: Table S3 - Virulence gene summary

description: Summary of the presence/absence of each virulence-associated gene included in the virulence gene analysis. Genes included in this analysis are listed after each gene family.
DOI: 10.6084/m9.figshare.5477476.v1
title: Table S4 - Virulence gene analysis

description: Detailed results of virulence gene analysis. Combined BLAST and SRST2 results for each gene examined. Includes gene location (scaffold in sample genome assembly; only for BLAST), % identity and % coverage.
DOI: 10.6084/m9.figshare.5477461
title: Table S2 - ST73 assembly statistics

description: Assembly statistics for the 16 genomes sequenced in this study.
DOI: 10.6084/m9.figshare.5477464
title: Table S1 - Sample data sourced from Enterobase

description: Sample data sourced from Enterobase for public read sequences used to generate the 226 isolate phylogenetic tree. Also includes reasoning for sample exclusion.<br>
DOI: 10.6084/m9.figshare.5477449
title: Figure_S1 - Marker gene phylogeny of ST73 isolates

description: Maximum likelihood phylogenetic tree of Escherichia coli ST73 isolates isolated from a hospital in Sydney Australia and 6 complete whole genome sequences isolated from GenBank. Tree was inferred using an alignment generated by the PhyloSift pipeline.
DOI: 10.6084/m9.figshare.5477449.v1
title: Figure_S1 - Marker gene phylogeny of ST73 isolates

description: Maximum likelihood phylogenetic tree of Escherichia coli ST73 isolates isolated from a hospital in Sydney Australia and 6 complete whole genome sequences isolated from GenBank. Tree was inferred using an alignment generated by the PhyloSift pipeline.
DOI: 10.6084/m9.figshare.5477461.v2
title: Table S2 - ST73 assembly statistics

description: Assembly statistics for the 16 genomes sequenced in this study.
DOI: 10.6084/m9.figshare.5477461.v1
title: Table S1 - ST73 assembly statistics

description: Assembly statistics for the 16 genomes sequenced in this study.
DOI: 10.6084/m9.figshare.5477464.v1
title: Table S2 - Sample data sourced from Enterobase

description: Sample data sourced from Enterobase for public read sequences used to generate the 226 isolate phylogenetic tree. Also includes reasoning for sample exclusion.<br>
DOI: 10.6084/m9.figshare.5477212
title: Waste activated sludge (7 - 13 wt%) flow curves at elevated temperature conditions (80 - 140 °C)

description: This submission contains the raw rheometer outputs from flow curve measurements of waste activated sludge (7, 9, 12 and 13 wt% total solids) at high temperature conditions (80, 100, 120, 130 and 140 °C).<br>The measurements were carried out on a DHR-3 rheometer (TA-Instruments), equipped with a pressure cell geometry. <br>Measurement protocol summary:<br>1) Waste activated sludge samples loaded into pressure cell.2) Nitrogen gas used to purge air from pressure cell.3) Nitrogen gas used to pressurise pressure cell to 5 bar.4) Flow curve generated for sample at 25 °C. Flow curves were generated by presetting a decreasing logarithmic shear-rate sweep.5) Sample heated to desired set point (80 °C).6) Once reached, flow curves were generated periodically at constant temperature (80 °C) over a 60 minute period.7) Sample cooled down to 25 °C and final flow curve generated.8) Sample replaced and repeat at new desired temperature (80 - 140 °C).<br>Detailed experimental protocol is recorded in the .tri (TRIOS) file attached with each data set. This file can be read using the TRIOS software made available on TA-Instruments website (http://www.tainstruments.com/support/software-downloads-support/downloads/). Rheometer geometry dimensions and other details are also obtainable from these files. <br>Please contact authors for access to files.<br><br>Contact:<br><br>nicky.eshtiaghi@rmit.edu.au RMITrheologygroup@gmail.com
DOI: 10.6084/m9.figshare.5477059
title: A study of fatal pedestrian crashes at rural low-volume road intersections in southwest China

description: <b>Objective</b>: Although intersections correspond to a small proportion of the entire roadway system, they account for a disproportionally high number of fatal pedestrian crashes, especially on rural roads situated in low- and middle-income countries. This article examines pedestrian safety at rural intersections and suggests applicable accident prevention treatments by providing an in-depth analysis of 28 fatal pedestrian crashes from 8 low-volume roads in southwest China. <b>Methods</b>: The driving reliability and error analysis method (DREAM) is a method to support a systematic classification of accident causation information and to facilitate aggregation of that information into patterns of contributing factors. This is the first time that DREAM was used to analyze pedestrian–vehicle crashes and provide suggestions for road improvements in China. <b>Results</b>: The key issues adversely affecting pedestrian safety can be organized in 4 distinctive thematic categories, namely, deficient intersection safety infrastructure, lack of pedestrian safety education, inadequate driver training, and insufficient traffic law enforcement. Given that resources for traffic safety investments in rural areas are limited, it is determined that the potential countermeasures should focus on low-cost, easily implementable, and long-lasting measures increasing the visibility and predictability of pedestrian movement and reducing speeding and irresponsible driving among drivers and risk-taking behaviors among pedestrians. <b>Conclusions</b>: Accident prevention treatments are suggested based on their suitability for rural areas in southwest China. These countermeasures include introducing better access management and traffic calming treatments, providing more opportunities for pedestrian education, and enhancing the quality of driver training and traffic law enforcement.
DOI: 10.6084/m9.figshare.5477062
title: ALDH1A1 and HLTF modulate the activity of lysosomal autophagy inhibitors in cancer cells

description: Lysosomal autophagy inhibitors (LAI) such as hydroxychloroquine (HCQ) have significant activity in a subset of cancer cell lines. LAIs are being evaluated in cancer clinical trials, but genetic determinants of sensitivity to LAIs are unknown, making it difficult to predict which tumors would be most susceptible. Here we characterize differentially expressed genes in HCQ-sensitive (-S) and -resistant (-R) cancer cells. Notably, expression of canonical macroautophagy/autophagy genes was not associated with sensitivity to HCQ. Expression patterns of ALDH1A1 (aldehyde dehydrogenase 1 family member A1) and HLTF (helicase like transcription factor) identified HCQ-S (ALDH1A1<sub>high</sub> HLTF<sub>low</sub>; ALDH1A1<sub>low</sub> HLTF<sub>low</sub>) and HCQ-R (ALDH1A1<sub>low</sub> HLTF<sub>high</sub>) cells. ALDH1A1 overexpression was found to enhance LAI cell entry and cytotoxicity without directly affecting lysosome function or autophagic flux. Expression of HLTF allows repair of DNA damage caused by LAI-induced reactive oxygen species, leading to HCQ resistance. Sensitivity to HCQ is increased in cells where <i>HLTF</i> is silenced by promoter methylation. HLTF overexpression blunted the antitumor efficacy of chloroquine derivatives in vitro and in vivo. Analysis of tumor RNA sequencing data from &gt;700 patients in the Cancer Genome Atlas identified cancers including colon cancer, renal cell carcinoma, and gastric cancers, that were enriched for the HCQ-S or HCQ-R signature. These results provide mechanistic insights into LAI efficacy, and guidance for LAI clinical development.
DOI: 10.6084/m9.figshare.5477212.v2
title: Waste activated sludge (7 - 13 wt%) flow curves at elevated temperature conditions (80 - 140 °C)

description: This submission contains the raw rheometer outputs from flow curve measurements of waste activated sludge (7, 9, 12 and 13 wt% total solids) at high temperature conditions (80, 100, 120, 130 and 140 °C).<br>The measurements were carried out on a DHR-3 rheometer (TA-Instruments), equipped with a pressure cell geometry. <br>Measurement protocol summary:<br>1) Waste activated sludge samples loaded into pressure cell.2) Nitrogen gas used to purge air from pressure cell.3) Nitrogen gas used to pressurise pressure cell to 5 bar.4) Flow curve generated for sample at 25 °C. Flow curves were generated by presetting a decreasing logarithmic shear-rate sweep.5) Sample heated to desired set point (80 °C).6) Once reached, flow curves were generated periodically at constant temperature (80 °C) over a 60 minute period.7) Sample cooled down to 25 °C and final flow curve generated.8) Sample replaced and repeat at new desired temperature (80 - 140 °C).<br>Detailed experimental protocol is recorded in the .tri (TRIOS) file attached with each data set. This file can be read using the TRIOS software made available on TA-Instruments website (http://www.tainstruments.com/support/software-downloads-support/downloads/). Rheometer geometry dimensions and other details are also obtainable from these files. <br>Please contact authors for access to files.<br><br>Contact:<br><br>nicky.eshtiaghi@rmit.edu.au RMITrheologygroup@gmail.com