cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/rv5k5tbhsw
title: Data for: Hydrogen production by photoelectrolysis 

description: This dataset contains information regarding the patented methods (both application and granted patents) for the production of hydrogen by photoelectrolysis processes.
The database used for data mining: Orbit Intelligence (a fee-based professional database provided by Questel), accessed on Oct. 9, 2021.
The attached file contains information related to publication numbers, publication dates, title, abstract, current assignee, and claims.
The patent search was carried out on the title (TI), abstract (AB), and claims (CLMS, ICLM) fields. 
Both IPC (International Patent Classification) and CPC (Cooperative Patent Classification) codes were used. 
The search strategy is reported in the following table: 

1	707	(HYDROGEN OR "H_2")/CLMS/ICLM AND (C25B-001/55)/IPC/CPC
2	680	((HYDROGEN 1W PRODUCTION))/CLMS/ICLM AND (B01J-035/004)/IPC/CPC
3	13	( ((HYDROGEN 1W PRODUCTION))/TI/AB/CLMS/ICLM AND (PHOTO_ELECTROLYSIS)/DESC/ODES ) AND (H01L+)/IPC/CPC
4	1357	  1 OR   2 OR   3

Definition of the classification codes used:

C25B 1/55: Electrolytic production of inorganic compounds or non-metals • Processes •• Photoelectrolysis
B01J 35/004: Catalysts, in general, characterized by their form of physical properties • Catalysts characterized by their physical properties •• Photocatalysts 
H01L: Semiconductor devices
DOI: 10.6084/m9.figshare.21378864.v1
title: Where is the research about stepmothers? A scoping review

description: Developments in remarriage and divorce have led to an influx of research on stepfamilies. However, previous studies show that the experiences of stepmothers are underreported. Therefore, a scoping review of current available academic literature (2012-2022) on stepmother experiences was conducted to identify the way forward for future research. A sample of 11 articles indicate that stepmother research is mainly WEIRD and qualitative. Stepmothers reportedly experience ambivalent emotions which they may deal with silently, whilst navigating ambiguous stepmother roles with possibly limited support or acknowledgement under the wicked stepmother stereotype. Gaps in research and further research opportunities are identified.
DOI: 10.6084/m9.figshare.1452900.v1
title: Adjustment of diving behaviour with prey encounters and body condition in a deep diving predator: the Southern Elephant Seal

description: Dive characteristics obtained for six post-breeding females Southern Elephant Seals (SES). SES are identified with their ID. Each row is a dive and each column is a variable associated to this dive: diveCount: number of the dive for the individual considered startTime: time at the beginning of the dive diveDuration: dive duration (s) maxDepth: maximum depth reaching (m) surfaceTimeAFTER: time spent at the surface after the dive (s) descentDuration: descent phase duration (s) bottomDuration: bottom phase duration (s) ascentDuration: ascent phase duration (s) isDrift: 1 drift dive - 0 non-drift dive captureCount: number of capture during the whole dive captureBottomCOUNT: number of capture during the bottom phase descentAngle: average body angle of the animal during the descent phase (°) ascentAngle: average body angle of the animal during the ascent phase (°) bodyDensity: body density of the animal (kg.m^-3) descentEffort: average swimming effort of the animal during the descent phase (m.s^-3) bottomEffort: average swimming effort of the animal during the bottom phase (m.s^-3) ascentEffort: average swimming effort of the animal during the ascent phase (m.s^-3) descentEffortTOT: sum of the swimming effort of the animal during the descent phase (m.s^-2) bottomEffortTOT: sum of the swimming effort of the animal during the bottom phase (m.s^-2) ascentEffortTOT: sum of the swimming effort of the animal during the ascent phase (m.s^-2) captureDescentCOUNT: number of capture during the descent phase captureAscentCOUNT:number of capture during the ascent phase surfaceTimeBEFORE: time spent at the surface before the dive (s) ID: user name of the animal
DOI: 10.6084/m9.figshare.28091693.v1
title: Li_JGROceans_Submission1

description: The dataset used in "Estuarine sediment dynamics influenced by successive typhoons I."
DOI: 10.17632/jx88tpg7w8
title: GIP infusion does not affect the white adipose tissue transcriptome but increases hepatic fat content and brown adipose tissue thermogenesis in patients with type 1 diabetes

description: Supplemental methods, figures and RNA-sequencing data for the article: GIP infusion does not affect the white adipose tissue transcriptome but increases hepatic fat content and brown adipose tissue thermogenesis in patients with type 1 diabetes
DOI: 10.17632/6sgmz2cr7r
title: Urban biodiversity assessment in Kochi city: A pilot study with reference to birds and butterflies

description: Biodiversity is usually considered and monitored with a prejudiced notion that it is applicable only for rural or wild habitats. But the present scenario of urbanization demands more emphasis on assessment of biodiversity in urban environments. Urban biodiversity plays a critical role in maintaining the life of urban dwellers. Concurrently, urban species are under severe threat imparted by rapidly expanding urban centres. The present status of urban biodiversity is uncertain in many of the cities especially in India. In an attempt to assess urban biodiversity in Kochi, a fast-moving city in Kerala, a six month long assessment of taxa viz. birds and butterflies was conducted from September 2017 to February 2018. A checklist of observed species was prepared. A three month long quantitative monitoring was also carried out during this period in 100 randomly selected locations in Kochi city by point count method once in a month. Species diversity was assessed from the quantitative data by computing indices of richness, diversity and evenness. 70 species of birds belonging to 56 genera, 37 families and 14 orders and 70 species of butterflies belonging to 51 genera, 14 subfamilies and 5 families were recorded. The present study reveals an appreciable diversity of birds and butterflies in Kochi city. The various diversity indices estimated will serve as a baseline data for evaluation of man-made effects on urban ecosystem particularly on biodiversity. The results suggest that both the taxa can be considered for long term biodiversity monitoring programs because of their adaptability to urban environments and the feasibility of monitoring. Also the current assessment recommends a periodic quantitative monitoring in urban habitats with varying degree of urbanization. Such an assessment will be useful in generating a precise knowledge on the present status and dynamics of species diversity of urban birds and butterflies. Meaningful indicator species also can be proposed from them which can be used as the indicators of the state of overall biodiversity in urban habitats. This will be a suitable tool for sustainable urban planning in order to conserve and enhance the biodiversity of urban environments. 

(In A.B. Kumar, P.N. Krishnan, A.G. Pandurangan, C.K. Peethambaran & C. Sureshkumar (Eds.), Perspectives On Biodiversity Of India - Vol. IV: Proceedings of the International Biodiversity Congress (IBC 2018) (pp. 125-131). Thiruvananthapuram: Centre for Innovation in Science and Social Action (CISSA). ISBN: 978-81-937930-6-0.)
DOI: 10.17632/r9n7cr97jw
title: Dataset. Bouquet et al. Body-scaled action-anticipation.

description: Passability judgments of door-like apertures in romantically involved and single participants. Aperture judgements were made in the first person perspective (1-PP) and third person perspective (3-PP). Scores on Inclusion of other in the self scale (IOS) and passionate love scale (PLS) for romantically involved participants.
DOI: 10.6084/m9.figshare.7914257.v1
title: gVCF_NA19066

description: 1000 Genomes gVCF mapped to hs37d5 for NA19066. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.26347327.v5
title: <b>In situ estimation of active dispersal abilities in reef fish early life stages using tracking technologies</b>

description: 1. Most reef fishes possess an early pelagic stage that ensures the crucial role of maintaining connectivity between distant populations, as movements of older demersal stages are generally restricted. While classically considered passive, numerous studies show that most larvae largely influence dispersion scale and settlement rate by actively swimming horizontally/vertically in an oriented way during most of their pelagic phase.2. Laboratory measurements of active dispersal skills differ from natural behaviors of individuals observed by divers manually annotating depth and bearing every 30s, while carrying a low-speed flowmeter to estimate average speed. Here, we improved this protocol through the use of electronic measurement devices to achieve enhanced feasibility, replicability, efficiency, and safety. Bearing and depth could be precisely measured at high-frequencies using a logger fixed on an optimized diving tray, which allowed us to reduce tracking duration from 10 min to 5 min, to track more individuals. It also permitted studying in situ the temporal dynamic of vertical speed and direction changes. All further steps, including data entry, sensor calibration, circular statistics and 3D track reconstruction (Madwick filter), were automated within interactive pipelines, enabling to obtain results within 3h after dives during fieldwork.3. We conducted in situ trackings for a diversified set of species (32 per ocean) during developments in the Caribbean (Guadeloupe), before being routinely applied in the Indian Ocean (Maldives) with a majority of trackings successfully carried out (74%) despite offshore conditions. High individual orientation accuracy, combined with great swimming/sinking abilities possibly dependent on depth/current, suggests that pelagic larvae/juveniles can swim in a correlated random-walk (CRW). This occurs even when orientation cues are too scarce for a consistent orientation among species/zones to emerge (biased CRW), marking a difference with their behavior in coastal environment.4. Although biophysical models of dispersal ease the development of informed conservation strategies at large spatial scales, comparisons with genetic connectivity demonstrate that only models incorporating realistic active behaviors yield comparable outputs. Our methodological advances overcome various obstacles preventing measuring the parameters necessary for active models, not only for demersal fishes, but also for any small pelagic organism in any aquatic habitat.
DOI: 10.17632/jhhw9wp5dk
title: The vimentin intermediate filaments coordinate actin stress fibers and podosomes to determine the ECM degradation by macrophages

description: Rawdata of quantification and western blot imaging in this paper.
DOI: 10.6084/m9.figshare.22189915.v1
title: Supplementary Material for: Extremely Low Dose of Erythropoiesis-Stimulating Agent May be Associated with Increased Mortality in Hemodialysis Patients

description: Introduction: Although high dose erythropoiesis-stimulating agent (ESA) has been shown to increase mortality risk and adverse cardiovascular events in hemodialysis patients, the safety of extremely low dose ESA is unclear. Methods: We retrospectively analyzed the association between ESA dose and mortality in the monthly dosing range of 0-43,000 U of equivalent epoetin alpha in 304 Taiwan hemodialysis patients by using Cox proportional hazard model and cubic spline model. Results: Compared with mean monthly ESA dose of 15,000-25,000 U (mean ± standard deviation 20,609 ± 2,662 U), monthly ESA dose of less than 15,000 U (mean ± standard deviation 7,413 ± 4,510 U) is associated with increased mortality. Monthly ESA dose of 25,001-43,000 U (mean ± standard deviation 31,160 ± 4,304 U) is not associated with higher mortality risk than monthly ESA dose of 15,000-25,000 U. The results were consistent in Cox proportional hazard models and cubic spline models. Subgroup analyses showed no significant heterogeneities among prespecified subgroups. Conclusions: Extremely low dose of ESA in hemodialysis patients may be associated with increased mortality risk. Future studies are warranted to prove this association.
DOI: 10.6084/m9.figshare.26105290.v1
title: Supplementary Material for: Prevalence of Trigeminal Neuralgia and Persistent Idiopathic Facial Pain in Afyonkarahisar, Türkiye

description: Background
Population-based studies examining the prevalence of trigeminal neuralgia (TN) and Persistent Idiopathic Facial Pain (PIFP) are rare, and data on TN prevalence in Türkiye are very limited, with the prevalence of PIFP being unknown. This study aimed to determine the prevalence of TN and PIFP in Türkiye. 
Materials and Methods 
This population-based epidemiological study has a cross-sectional and descriptive design, and it was carried out in Afyonkarahisar, Türkiye. Participants aged 18 years and older were screened by using a self-assessment form to determine potential patients with TN or PIFP. 
Results
A total of 19,237 individuals were included in this study, of which 17,223 responded to the survey questions. TN was diagnosed in 17 individuals, and the prevalence of TN was calculated as 98.5 per 100,000. PIFP was diagnosed in 35 patients, and the prevalence of PIFP was calculated as 202 per 100,000. The mean age of the patients with TN was 54.29±12.98 years, the mean age of patients with PIFP was 49.80±16.10 years, and the female-to-male ratio was 1.13/1 for TN and 2.18/1 for PIFP. 
Conclusion
The prevalence of PIFP in Türkiye has been reported for the first time by this study. Additionally, a much higher prevalence of TN was found when compared to previous study.
DOI: 10.6084/m9.figshare.11498142.v1
title: Deep-Learning-Based Components Identification for Raman Spectroscopy

description: Raman spectra contain abundant information from molecules but are difficult to analyze, especially for the mixtures. Deep-Learning-Based Components Identification for Raman Spectroscopy (DeepCID) has been proposed for the problem of components identification. Convolution Neural Network (CNN) models have been established to predict the presence of the components in the mixtures.
DOI: 10.6084/m9.figshare.12415928.v1
title: Tetracentron sinense genome

description: Tsi.chr.fa.gz--------Tetracentron sinense chromosome assemblyTsi.chr.cds.gz-------Tetracentron sinense CDS sequenceTsi.chr.gff.gz-------Tetracentron sinense gene structure gff fileTsi.chr.pep.gz-------Tetracentron sinense protein sequence<br>
DOI: 10.6084/m9.figshare.19904833.v2
title: CNN_SWS_data

description: Training and testing dataset for CNN_SWS 08/10/22: Add XKS.list. Thanks reminder from Kyeongjun Jo (M.S. Student of Korea University)
DOI: 10.6084/m9.figshare.20511039.v1
title: Deducing Lunar Regolith Porosity from Energetic Neutral Atom Emission (Dataset)

description: This dataset contains accompanying data for the manuscript "Deducing Lunar Regolith Porosity from Energetic Neutral Atom Emission " by P.S. Szabo et al. <br> In particular, an example "tri.inp" input file for SDTrimSP-3D simulations is included, as well as the data plotted in the figures of the main manuscript and the supporting information.
DOI: 10.17632/fhm5c4zxzg
title: Data for: Petrographic analysis with deep convolutional neural networks

description: Thin section photographs with 10X magnification zoom under plane parallel polarized light. Organized in folders with interpreted microfacies. Subcrops of the images are also provided.
DOI: 10.17632/jy5t72fd32
title: Dataset for Co-speech Movement in Conversational Turn-taking

description: This dataset includes head and brow movement trajectories for four pairs of partners in a dyadic interaction described in detail in the associated manuscript. The analysis script (turntaking_analysis_Frontiers.R) uses the trajectories in the .txt files.
DOI: 10.6084/m9.figshare.19306640.v3
title: Rydberg Quantum Wires for Maximum Independent Set Problems

description: We provide datasets for Figure 2(d-f, j-l), Figure 3(e,f), and Figure 4(d), respectively.<br>Each file has a N by M matrix, in which the rows and columns are binary spin configurations of each qubits(N) and repeated events(M).<br>For example, a following data has a matrix with size : digitized_data_fig2d.csv (for Figure 2. d): 4 X 678digitized_data_fig3e.csv (for Figure 3. e): 11 X 1961
DOI: 10.6084/m9.figshare.15123864.v1
title: Supplementary Material for: Engineered Aging Cardiac Tissue Chip Model for Studying Cardiovascular Disease

description: Due to the rapidly growing number of older people worldwide and the concomitant increase in cardiovascular complications, there is an urgent need for age-related cardiac disease modeling and drug screening platforms. In the present study, we developed a cardiac tissue chip model that incorporates hemodynamic loading and mimics essential aspects of the infarcted aging heart. We induced cellular senescence in H9c2 myoblasts using low-dose doxorubicin treatment. These senescent cells were then used to engineer cardiac tissue fibers, which were subjected to hemodynamic stresses associated with pressure-volume changes in the heart. Myocardial ischemia was modeled in the engineered cardiac tissue via hypoxic treatment. Our results clearly show that acute low-dose doxorubicin treatment-induced senescence, as evidenced by morphological and molecular markers, including enlarged and flattened nuclei, DNA damage response foci, and increased expression of cell cycle inhibitor p16<sup>INK4a</sup>, p53, and ROS. Under normal hemodynamic load, the engineered cardiac tissues demonstrated cell alignment and retained cardiac cell characteristics. Our senescent cardiac tissue model of hypoxia-induced myocardial infarction recapitulated the pathological disease hallmarks such as increased cell death and upregulated expression of ANP and BNP. In conclusion, the described methodology provides a novel approach to generate stress-induced aging cardiac cell phenotypes and engineer cardiac tissue chip models to study the cardiovascular disease pathologies associated with aging.
DOI: 10.17632/xkfjrgf535
title: esNotch 2019 Nov

description: 2021-10-29: per reader request, additional figures are provided
DOI: 10.6084/m9.figshare.13264793.v1
title: BioSR

description: BioSR datasets for super-resolution microscopy, currently including linear SIM data and nonlinear SIM data.
DOI: 10.4121/uuid:44a6b4eb-c4b6-4199-b023-39a97ab0eae8
title: Data of the PhD thesis "Escherichia coli metabolism under dynamic conditions: The tales of substrate hunting"

description: Dynamic environmental conditions govern microbial metabolism and affect cellular growth. Many applications in biotechnology require cultivating microorganisms in large-scale bioreactors. These environments are commonly characterized by physicochemical gradients, due to imperfect mixing and have been the cause of reduced performance of cell factories in industry. The aim of this thesis was to unravel and understand the effects of repetitive substrate fluctuations on the cellular behaviour of Escherichia coli K12 MG1655, using experimental and modelling approaches. The datasets derived from this research characterize E.coli cultivations (performed in 1.2 L lab bioreactors) under two different growth conditions: carbon-limited steady-state and repetitive cycles of substrate gradients. The data include: physiological rates, quantitative metabolite concentrations, metabolic flux balance analysis, 13C labelling enrichment metabolite profiles, shot-gun proteomic data, as well as dynamic kinetic modelling approaches.
DOI: 10.6084/m9.figshare.15190101.v1
title: Transcriptome assemblies for four Syngnathidae species

description: This dataset contains transcriptome assemblies and annotation for Syngnathus typhle, Syngnathus rostellatus, Nerophis ophidion and Hippocampus erectus.The raw data from which these assemblies were created can be found on NCBI SRA under the project ID PRJNA755822.For details on the processing steps used, see the publication (to be added). Briefly, for each species, the reads were error corrected with Rcorrector, normalized with Bignorm and then assembled with Trinity. The result was annotated with the Trinotate package.<br>
DOI: 10.6084/m9.figshare.24521632.v1
title: XYZ coordinates

description: XYZ coordinates contained the geometries used for the calculations for extended-QM8
DOI: 10.6084/m9.figshare.25887490.v4
title: metagenome genomes and annotations of two Bromeliaceae species

description: Our research (Tracing the evolutionary and genetic footprints of air plants transition from land to air) assembled the genome of the TU and VE two Bromeliaceae species and annotation information (file: GENOME GFF ).
DOI: 10.6084/m9.figshare.16669222.v1
title: ImSURE Anisotropic Phantom

description: Anisotropic phantom
DOI: 10.17632/6cw35fj7z4
title: Pyramidal neurons form an active, transient, multilayered circuit motif perturbed by autism-associated mutations at the inception of neocortex

description: Single cell RNA sequencing data from the embryonic mouse cortex. Cells were sorted with FACS to enrich for Rbp4-Cre neurons.
DOI: 10.6084/m9.figshare.24087816.v1
title: Supplementary Material for: Antidepressants and Social Functioning in Patients with Major Depressive Disorder – Systematic Review and Meta-analysis of Double-blind, Placebo-controlled RCTs

description: Introduction: Social functioning (SF) is the ability to fullfill one’s social obligations and a key outcome in treatment. Objective: To estimate the effects of antidepressants on SF in patients with MDD. Methods: This meta-analysis and its reporting are based on Cochrane Collaboration’s Handbook of Systematic Reviews and Meta-Analyses and PRISMA guidelines (protocol registration at OSF). We systematically searched CENTRAL, Medline, PubMed Central, and PsycINFO for double-blind RCTs comparing antidepressants with placebo and reporting on SF. We computed standardized mean differences (SMD) with 95%-CIs and prediction intervals. Results: We selected 40 RCTs out of 1188 records screened, including 16.586 patients (age 46.75 years, 64.2% women). In 27 studies investigating patients with major depressive disorder (primary depression), antidepressants resulted in a SMD of 0.25 compared to placebo ([95%-CI: 0.21; 0.30] I2: 39%). In 13 trials with patients suffering from major depressive disorder comorbid with physical conditions or disorders the summary estimate was 0.24 ([0.10; 0.37] I2 : 75%). In comorbid depression, studies with high/uncertain risk of bias had higher SMDs than low risk studies: 0.29 [0.13; 0.44] vs. 0.04 [-0.16; 0.24]; no such effect was evident in primary depression. There was no indication of sizeable reporting bias. SF efficacy correlates with efficacy on depression scores, Spearman’s rho 0.67 (p&lt;0.001), and QoL, 0.63 (p&lt;0.001). Conclusions: The effect of antidepressants on social functioning is small, similar to its effect on depressive symptoms in primary major depressive disorder and doubtful in comorbid depression. Strong correlations with both antidepressive and QoL effects suggest overlap among domains.