cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8137676
title: Input data for Episim Cologne Corona spreading simulation

description: This dataset is supplementary material for



Müller, S.A., Paltra, S., Rehmann, J., Nagel, K., Conrad, T.O.F. Explicit modeling of antibody levels for infectious disease simulations in the context of SARS-CoV-2. iScience. 2023;26(9):107554. https://doi.org/10.1016/j.isci.2023.107554


The dataset is also used in the Math+ project EF4-13 "Modeling Infection Spreading and Counter-Measures in a Pandemic Situation Using Coupled Models" to perform the epidemic simulation studies for Cologne. 

The open dataset contains a 25 percent sample of the original dataset. The code for running the simulation is also available in this Github repository: https://github.com/matsim-org/matsim-episim. 

For the terms of use, please see the associated LICENSE file.

More information can be found on our website: https://covid-sim.info/. If you have questions, please contact covid19@vsp.tu-berlin.de .

Available files:



cologne_snz_entirePopulation_emptyPlans_withDistricts_25pt_split.xml.gz: Population including all persons having activities in one of the events files. The person attributes are homeId, homeCoordinates, age, district of home. The coordinates are in grid accuracy of 300m.

cologne_snz_episim_events_sa_25pt_split.xml.gz cologne_snz_episim_events_so_25pt_split.xml.gz cologne_snz_episim_events_wt_25pt_split.xml.gz The episim events files for a weekday, Saturday and Sunday. The events files are filtered for the only necessary types of events (actend, actstart, PersonEntersVehicle, PersonLeavesVehicle).

cologne_2020-vehicles.xml.gz File includes a mapping of vehiclesIds to the vehilce type.

cologne_facilities_assigned_simplified_grid.xml.gz Including the facilities used in the evnts files. The coordinates are in grid accuracy of 300m.

cologne_until20221231_mobility_data.csv Daily mobility data for Cologne for the simulated period.
DOI: 10.5281/zenodo.8137677
title: Input data for Episim Cologne Corona spreading simulation

description: This dataset is supplementary material for



Müller, S.A., Paltra, S., Rehmann, J., Nagel, K., Conrad, T.O.F. Explicit modeling of antibody levels for infectious disease simulations in the context of SARS-CoV-2. iScience. 2023;26(9):107554. https://doi.org/10.1016/j.isci.2023.107554


The dataset is also used in the Math+ project EF4-13 "Modeling Infection Spreading and Counter-Measures in a Pandemic Situation Using Coupled Models" to perform the epidemic simulation studies for Cologne. 

The open dataset contains a 25 percent sample of the original dataset. The code for running the simulation is also available in this Github repository: https://github.com/matsim-org/matsim-episim. 

For the terms of use, please see the associated LICENSE file.

More information can be found on our website: https://covid-sim.info/. If you have questions, please contact covid19@vsp.tu-berlin.de .

Available files:



cologne_snz_entirePopulation_emptyPlans_withDistricts_25pt_split.xml.gz: Population including all persons having activities in one of the events files. The person attributes are homeId, homeCoordinates, age, district of home. The coordinates are in grid accuracy of 300m.

cologne_snz_episim_events_sa_25pt_split.xml.gz cologne_snz_episim_events_so_25pt_split.xml.gz cologne_snz_episim_events_wt_25pt_split.xml.gz The episim events files for a weekday, Saturday and Sunday. The events files are filtered for the only necessary types of events (actend, actstart, PersonEntersVehicle, PersonLeavesVehicle).

cologne_2020-vehicles.xml.gz File includes a mapping of vehiclesIds to the vehilce type.

cologne_facilities_assigned_simplified_grid.xml.gz Including the facilities used in the evnts files. The coordinates are in grid accuracy of 300m.

cologne_until20221231_mobility_data.csv Daily mobility data for Cologne for the simulated period.
DOI: 10.15468/dl.2pe35g
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Senecio hesperidum Jahand., Maire & Weiller"
 ]
}

 The dataset includes 29 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105002-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mujavx
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rubus quinquefoliolatus T.T.Yu & L.T.Lu"
 ]
}

 The dataset includes 18 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105001-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.umvhdv
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schwantesia herrei L.Bolus"
 ]
}

 The dataset includes 34 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105003-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.7389575
title: Code and data for the article: Between the Lines: Life Cycle Collision and Electrocution Impacts of Power Lines on Birds in Norway

description: This repository contains all input data required to run the collision and electrocution LCIA models and reproduce the results, as well as all output data generated in various formats. The models are described in the papar "Between the Lines: Life Cycle Collision and Electrocution Impacts of Power Lines on Birds in Norway". The files "01_data_preparation.R", "02_double_pylons_cleaner.py", and "03_forest_cover_convert.py" describe how to prepare and modify the raw data for the analysis. The raw data are not provided, yet links to the sources are provided either in the R code ("01_data_preparation.R") or the paper. To run the models, run the "04_collision_electrocution_models.R" file. To calculate characterization factors, run the "05_characterisation_factors.R" file.
DOI: 10.5281/zenodo.10624157
title: Code and data for the article: Between the Lines: Life Cycle Collision and Electrocution Impacts of Power Lines on Birds in Norway

description: This repository contains the data required to run the collision and electrocution LCIA models and reproduce the results, as well as output data generated in various formats. The models are described in the paper "Between the Lines: Life Cycle Collision and Electrocution Impacts of Power Lines on Birds in Norway".

The files "01_data_preparation.R", "02_double_pylons_cleaner.py", and "03_forest_cover_convert.py" describe how to prepare and modify the raw data for the analysis. The raw data are not provided, yet links to the sources are provided either in the R code ("01_data_preparation.R") or in the paper.

To run the models, run "04_collision_electrocution_models.R".

To calculate characterization factors, run "05_characterisation_factors.R".

To run sensitivity analysis for the collision risk probability, wingspan, and pylon use, run "06_sensitivity_analysis.R".
DOI: 10.5281/zenodo.7382772
title: Code and data for the article: Between the Lines: Life Cycle Collision and Electrocution Impacts of Power Lines on Birds in Norway

description: This repository contains the data required to run the collision and electrocution LCIA models and reproduce the results, as well as output data generated in various formats. The models are described in the paper "Between the Lines: Life Cycle Collision and Electrocution Impacts of Power Lines on Birds in Norway".

The files "01_data_preparation.R", "02_double_pylons_cleaner.py", and "03_forest_cover_convert.py" describe how to prepare and modify the raw data for the analysis. The raw data are not provided, yet links to the sources are provided either in the R code ("01_data_preparation.R") or in the paper.

To run the models, run "04_collision_electrocution_models.R".

To calculate characterization factors, run "05_characterisation_factors.R".

To run sensitivity analysis for the collision risk probability, wingspan, and pylon use, run "06_sensitivity_analysis.R".
DOI: 10.5281/zenodo.7382773
title: Code and data for the article: Between the Lines: Life Cycle Collision and Electrocution Impacts of Power Lines on Birds in Norway

description: This repository contains all input data required to run the collision and electrocution LCIA models and reproduce the results, as well as all output data generated in various formats. The models are described in the papar "Between the Lines: Life Cycle Collision and Electrocution Impacts of Power Lines on Birds in Norway". The files "01_data_preparation.R", "02_double_pylons_cleaner.py", and "03_forest_cover_convert.py" describe how to prepare and modify the raw data for the analysis. The raw data are not provided, yet links to the sources are provided either in the R code ("01_data_preparation.R") or the paper. To run the models, run the "04_collision_electrocution_models.R" file. To calculate characterization factors, run the "05_characterisation_factors.R" file. Note that you need to organise the files in certain folders to match the codes as describes in the image "Data_folder_pathways.png".
DOI: 10.15468/dl.qg7sdz
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selaginella longirostris Alderw."
 ]
}

 The dataset includes 18 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105004-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pp25jz
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scutellaria khaoyaiensis A.J.Paton"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105005-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10156629
title: Input data for Episim Berlin Corona spreading simulation

description: This dataset is supplementary material for 



Müller, S. A., Balmer, M., Charlton, W., Ewert, R., Neumann, A., Rakow, C., Schlenther, T. &Nagel, K. Predicting the effects of COVID-19 related interventions in urban settings by combiningactivity-based modelling, agent-based simulation, and mobile phone data. PLOS ONE 16 (ed Benenson, I.) (Oct. 2021) https://doi.org/10.1371/journal.pone.0259037


The dataset is also used in the Math+ project EF4-13 "Modeling Infection Spreading and Counter-Measures in a Pandemic Situation Using Coupled Models" to perform the epidemic simulation studies for Berlin. 

The open dataset contains a 25 percent sample of the original dataset. The code for running the simulation is also available in this Github repository: https://github.com/matsim-org/matsim-episim. 

For the terms of use, please see the associated LICENSE file.

More information can be found on our website: https://covid-sim.info/. If you have questions, please contact covid19@vsp.tu-berlin.de .

Available files:



be_2020-week_snz_entirePopulation_emptyPlans_withDistricts_25pt_split.xml.gz: Population including all persons having activities in one of the events files. The person attributes are homeId, homeCoordinates, age, district of home. The coordinates are in grid accuracy of 500m.

be_2020-week_snz_episim_events_sa_25pt_split.xml.gz be_2020-week_snz_episim_events_s_25pt_split.xml.gz be_2020-week_snz_episim_events_wt_25pt_split.xml.gz The episim events files for a weekday, Saturday and Sunday. The events files are filtered for the only necessary types of events (actend, actstart, PersonEntersVehicle, PersonLeavesVehicle).

be_2020-vehicles.xml.gz File includes a mapping of vehiclesIds to the vehilce type.

be_2020-facilities_assigned_simplified_grid.xml.gz Including the facilities used in the events files. The coordinates are in grid accuracy of 500m.

be_2020-mobility_data.csv Daily mobility data for Berlin for the simulated period.
DOI: 10.5281/zenodo.10156628
title: Input data for Episim Berlin Corona spreading simulation

description: This dataset is supplementary material for 



Müller, S. A., Balmer, M., Charlton, W., Ewert, R., Neumann, A., Rakow, C., Schlenther, T. &Nagel, K. Predicting the effects of COVID-19 related interventions in urban settings by combiningactivity-based modelling, agent-based simulation, and mobile phone data. PLOS ONE 16 (ed Benenson, I.) (Oct. 2021) https://doi.org/10.1371/journal.pone.0259037


The dataset is also used in the Math+ project EF4-13 "Modeling Infection Spreading and Counter-Measures in a Pandemic Situation Using Coupled Models" to perform the epidemic simulation studies for Berlin. 

The open dataset contains a 25 percent sample of the original dataset. The code for running the simulation is also available in this Github repository: https://github.com/matsim-org/matsim-episim. 

For the terms of use, please see the associated LICENSE file.

More information can be found on our website: https://covid-sim.info/. If you have questions, please contact covid19@vsp.tu-berlin.de .

Available files:



be_2020-week_snz_entirePopulation_emptyPlans_withDistricts_25pt_split.xml.gz: Population including all persons having activities in one of the events files. The person attributes are homeId, homeCoordinates, age, district of home. The coordinates are in grid accuracy of 500m.

be_2020-week_snz_episim_events_sa_25pt_split.xml.gz be_2020-week_snz_episim_events_s_25pt_split.xml.gz be_2020-week_snz_episim_events_wt_25pt_split.xml.gz The episim events files for a weekday, Saturday and Sunday. The events files are filtered for the only necessary types of events (actend, actstart, PersonEntersVehicle, PersonLeavesVehicle).

be_2020-vehicles.xml.gz File includes a mapping of vehiclesIds to the vehilce type.

be_2020-facilities_assigned_simplified_grid.xml.gz Including the facilities used in the events files. The coordinates are in grid accuracy of 500m.

be_2020-mobility_data.csv Daily mobility data for Berlin for the simulated period.
DOI: 10.15468/dl.n9j73u
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schwantesia loeschiana Tischer"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105006-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eyh5g2
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Senecio hewrensis Hook.fil."
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105007-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3r4rtn
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rubus racemosus Roxb."
 ]
}

 The dataset includes 27 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105008-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vk5drv
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selaginella lonko-batu Hieron. & Alderw."
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105009-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mdat69
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scutellaria khasiana C.B.Clarke ex Hook.f."
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105010-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5upm5k
title: Occurrence Download

description: A dataset containing 637 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Maculinea arion (Linnaeus, 1758)"
 ]
}

 The dataset includes 637 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105011-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vfeuek
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schwantesia marlothii L.Bolus"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105012-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8mhda5
title: Occurrence Download

description: A dataset containing 236 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Senecio hieracioides DC."
 ]
}

 The dataset includes 236 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105013-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.brpped
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scutellaria kikai-insularis Hatus. ex T.Yamaz."
 ]
}

 The dataset includes 15 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105016-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gzbsag
title: Occurrence Download

description: A dataset containing 13588 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rubus radula Weihe"
 ]
}

 The dataset includes 13588 records from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105014-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.myu9tj
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selaginella loriai Hieron."
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105015-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kr692z
title: Occurrence Download

description: A dataset containing 3208 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sambucus sibirica Nakai"
 ]
}

 The dataset includes 3208 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105017-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7kbawe
title: Occurrence Download

description: A dataset containing 3535 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melanophryniscus Gallardo, 1961"
 ]
}

 The dataset includes 3535 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105018-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10932600
title: hypotaenidia_owstoni_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.10932601
title: hypotaenidia_owstoni_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.15468/dl.sycpzy
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schwantesia pillansii L.Bolus"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105019-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y3t988
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Senecio hildebrandtii Baker"
 ]
}

 The dataset includes 95 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105020-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yk9g6t
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scutellaria kingiana Prain"
 ]
}

 The dataset includes 6 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105021-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nk3fx4
title: Occurrence Download

description: A dataset containing 274 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selaginella lutchuensis Koidz."
 ]
}

 The dataset includes 274 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105022-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2wpytk
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schwantesia ruedebuschii Dinter"
 ]
}

 The dataset includes 19 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105023-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.waafm4
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Asia",
 "GadmGid is CHN.6.4_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Platalea minor Temminck & Schlegel, 1849",
 "Year 2000-2024"
 ]
}

 The dataset includes 36 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105025-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.