cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.w3zv5v
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"7019132","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015837-241024112534372/datasets/export for details.
DOI: 10.15468/dl.a6rzuc
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"7300280","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 88 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015839-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.1591899
title: Characterization and Proteomic Analysis of <i>Geobacter sulfurreducens</i> PCA under Long-Term Electron-Donor Starvation

description: The natural environment of <i>Geobacter sulfurreducens</i> is oligotrophic and described as limiting in both electron donors and terminal electron acceptors (TEA). In previous studies we examined the effects of long-term TEA (fumarate) limitation, and in this study we examine long-term batch cultures under limiting electron donor. The microorganism survived under long-term electron donor (acetate) starvation, maintaining a stable population of ∼1–2 × 10<sup>8</sup> cells mL<sup>−1</sup> for &gt;650 days. Proteins that varied in abundance with a high level of statistical significance (<i>p</i> &lt; 0.05) for stages between mid-log to survival phase (acetate starved) were identified using iTRAQ based mass spectroscopy. The most highly represented proteins that significantly increased in level in the survival phase cells are generally membrane-associated and are involved in energy metabolism and protein fate. These results document that changes in the outer and cytoplasmic membranes may help <i>G. sulfurreducens</i> survive during starvation through detection and transport of nutrients into the cell. A sizeable portion of the identified proteins with unknown or hypothetical function further suggest that much of the biological process involved in survival have yet to be fully understood. <i>Geobacter sulfurreducens</i> was also able to survive under long-term TEA-starvation conditions with ferric citrate as TEA and maintained a stable population of 1.5–3 × 10<sup>7</sup> cells mL<sup>−1</sup> for &gt;650 days. We also found that survival phase cells from fumarate-limiting conditions were able to quickly resuscitate and reduce metal such as ferric iron as compared to the mid-log phase cells.
DOI: 10.6084/m9.figshare.1591899.v2
title: Characterization and Proteomic Analysis of <i>Geobacter sulfurreducens</i> PCA under Long-Term Electron-Donor Starvation

description: The natural environment of <i>Geobacter sulfurreducens</i> is oligotrophic and described as limiting in both electron donors and terminal electron acceptors (TEA). In previous studies we examined the effects of long-term TEA (fumarate) limitation, and in this study we examine long-term batch cultures under limiting electron donor. The microorganism survived under long-term electron donor (acetate) starvation, maintaining a stable population of ∼1–2 × 10<sup>8</sup> cells mL<sup>−1</sup> for &gt;650 days. Proteins that varied in abundance with a high level of statistical significance (<i>p</i> &lt; 0.05) for stages between mid-log to survival phase (acetate starved) were identified using iTRAQ based mass spectroscopy. The most highly represented proteins that significantly increased in level in the survival phase cells are generally membrane-associated and are involved in energy metabolism and protein fate. These results document that changes in the outer and cytoplasmic membranes may help <i>G. sulfurreducens</i> survive during starvation through detection and transport of nutrients into the cell. A sizeable portion of the identified proteins with unknown or hypothetical function further suggest that much of the biological process involved in survival have yet to be fully understood. <i>Geobacter sulfurreducens</i> was also able to survive under long-term TEA-starvation conditions with ferric citrate as TEA and maintained a stable population of 1.5–3 × 10<sup>7</sup> cells mL<sup>−1</sup> for &gt;650 days. We also found that survival phase cells from fumarate-limiting conditions were able to quickly resuscitate and reduce metal such as ferric iron as compared to the mid-log phase cells.
DOI: 10.6084/m9.figshare.1591899.v1
title: Characterization and Proteomic Analysis of <i>Geobacter sulfurreducens</i> PCA under Long-Term Electron-Donor Starvation

description: ABSTRACTThe natural environment of <i>Geobacter sulfurreducens</i> is oligotrophic and described as limiting in both electron donors and terminal electron acceptors (TEA). In previous studies we examined the effects of long-term TEA (fumarate) limitation, and in this study we examine long-term batch cultures under limiting electron donor. The microorganism survived under long-term electron donor (acetate) starvation, maintaining a stable population of ∼1–2× 10<sup>8</sup> cells mL<sup>−1</sup>for &gt;650 days. Proteins that varied in abundance with a high level of statistical significance (<i>p</i> &lt; 0.05) for stages between mid-log to survival phase (acetate starved) were identified using iTRAQ based mass spectroscopy. The most highly represented proteins that significantly increased in level in the survival phase cells are generally membrane-associated and are involved in energy metabolism and protein fate. These results document that changes in the outer and cytoplasmic membranes may help <i>G. sulfurreducens</i> survive during starvation through detection and transport of nutrients into the cell. A sizeable portion of the identified proteins with unknown or hypothetical function further suggest that much of the biological process involved in survival have yet to be fully understood. <i>G. sulfurreducens</i> was also able to survive under long-term TEA-starvation conditions with ferric citrate as TEA and maintained a stable population of 1.5–3 × 10<sup>7</sup> cells mL<sup>−1</sup> for &gt;650 days. We also found that survival phase cells from fumarate-limiting conditions were able to quickly resuscitate and reduce metal such as ferric iron as compared to the mid-log phase cells.
DOI: 10.6084/m9.figshare.27264401
title: Environmental characterization and impact of climatic fluctuations on the diversity of extremophilic bacterial communities of a high-altitude seasonal meltwater pond on Ojos del Salado (Dry Andes, Chile)

description: Earth has unique environments where only microorganisms adapted to extreme conditions can survive. The focus of this study was a high-altitude seasonal meltwater pond on the Altiplano plateau at 5900 m (Dry Andes). The polyextremophilic bacteria of this habitat must adapt to a range of extremities, including cold and dry climate, high UV radiation, and low nutrient availability. A macro-scale analysis was performed to characterize the environment using satellite imagery. To study the composition of bacterial communities, samples were taken from permafrost, water, and sediment of a meltwater pond during three subsequent expedition years under different weather conditions (average, high precipitation, severe drought). The bacterial diversity of the samples was revealed by Illumina MiSeq 16S rRNA gene amplicon sequencing. The results showed that the relative abundance of dominant phyla, such as Pseudomonadota, Bacteroidota, Acidobacteriota, and Verrucomicrobiota varied according to sample types and weather conditions, supported by the satellite environmental state analysis that showed correlations between the availability of snow, water surfaces, and the corresponding surface temperature values. Strong moisture-dependent quantitative changes were detected in the phyla Cyanobacteriota and Actinomycetota. Predominant sequences were linked to orders <i>Chitinophagales</i>, <i>Burkholderiales</i>, <i>Flavobacteriales</i>, and <i>Sphingomonadales,</i> known for their ability to degrade various organic compounds.
DOI: 10.6084/m9.figshare.27264401.v1
title: Environmental characterization and impact of climatic fluctuations on the diversity of extremophilic bacterial communities of a high-altitude seasonal meltwater pond on Ojos del Salado (Dry Andes, Chile)

description: Earth has unique environments where only microorganisms adapted to extreme conditions can survive. The focus of this study was a high-altitude seasonal meltwater pond on the Altiplano plateau at 5900 m (Dry Andes). The polyextremophilic bacteria of this habitat must adapt to a range of extremities, including cold and dry climate, high UV radiation, and low nutrient availability. A macro-scale analysis was performed to characterize the environment using satellite imagery. To study the composition of bacterial communities, samples were taken from permafrost, water, and sediment of a meltwater pond during three subsequent expedition years under different weather conditions (average, high precipitation, severe drought). The bacterial diversity of the samples was revealed by Illumina MiSeq 16S rRNA gene amplicon sequencing. The results showed that the relative abundance of dominant phyla, such as Pseudomonadota, Bacteroidota, Acidobacteriota, and Verrucomicrobiota varied according to sample types and weather conditions, supported by the satellite environmental state analysis that showed correlations between the availability of snow, water surfaces, and the corresponding surface temperature values. Strong moisture-dependent quantitative changes were detected in the phyla Cyanobacteriota and Actinomycetota. Predominant sequences were linked to orders <i>Chitinophagales</i>, <i>Burkholderiales</i>, <i>Flavobacteriales</i>, and <i>Sphingomonadales,</i> known for their ability to degrade various organic compounds.
DOI: 10.15468/dl.rrtyah
title: Occurrence Download

description: A dataset containing 575 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"7867604","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 575 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015841-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.24vhpy
title: Occurrence Download

description: A dataset containing 2105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((71.60659 22.69606, 71.6905 22.69606, 71.6905 22.75445, 71.60659 22.75445, 71.60659 22.69606))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 2105 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015840-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.emt8x5
title: Occurrence Download

description: A dataset containing 92009 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gypaetus barbatus (Linnaeus, 1758)"
 ]
}

 The dataset includes 92009 records from 353 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015838-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7kczvx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"3981144","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015843-241024112534372/datasets/export for details.
DOI: 10.15468/dl.fexytq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"4554413","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015842-241024112534372/datasets/export for details.
DOI: 10.15468/dl.uasmwt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"3876402","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015844-241024112534372/datasets/export for details.
DOI: 10.15468/dl.up2ysy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"3981130","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015846-241024112534372/datasets/export for details.
DOI: 10.15468/dl.ah5m9c
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"11747253","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015847-241024112534372/datasets/export for details.
DOI: 10.15468/dl.qwswfz
title: Occurrence Download

description: A dataset containing 27481 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((72.91313 26.15817, 73.13159 26.15817, 73.13159 26.35207, 72.91313 26.35207, 72.91313 26.15817))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 27481 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015845-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.byrfvz
title: Occurrence Download

description: A dataset containing 219 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Colombia",
 "Elevation 1826.0-2628.0m",
 "Geometry POLYGON((-74.43522 4.92615,-74.48401 4.88907,-74.47492 4.83551,-74.43026 4.82398,-74.38808 4.85035,-74.3765 4.89402,-74.43522 4.92615))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is Cundinamarca",
 "TaxonKey is Chordata"
 ]
}

 The dataset includes 219 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015848-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zbar9d
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"3876361","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015850-241024112534372/datasets/export for details.
DOI: 10.15468/dl.9p3f7f
title: Occurrence Download

description: A dataset containing 944483 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Luscinia svecica (Linnaeus, 1758)"
 ]
}

 The dataset includes 944483 records from 922 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015829-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c96my5
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Humularia chevalieri (De Wild.) P.A.Duvign."
 ]
}

 The dataset includes 15 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027201-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.