cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15625982
title: Distinct spatially organized striatum-wide acetylcholine dynamics for the learning and extinction of Pavlovian associations

description: ABSTRACT

Striatal acetylcholine (ACh) signaling has been proposed to counteract reinforcement signals to promote extinction and behavioral flexibility. ACh dips to cues and rewards may open a temporal window for associative plasticity to occur, while elevations may promote extinction. Changes in multi-phasic striatal ACh signals have been widely reported during learning, but how and where signals are distributed to enable region-specific plasticity for the learning and degradation of cue-reward associations is poorly understood. We used array fiber photometry in mice to investigate how ACh release across the striatum evolves during learning and extinction of Pavlovian associations. We report a topographic organization of opposing changes in ACh release to cues, rewards, and consummatory actions across distinct striatum regions. We localized reward prediction error encoding in particular phases of the ACh dynamics to a specific region of the anterior dorsal striatum (aDS). Positive prediction errors in the aDS were expressed in ACh dips, and negative prediction errors in long latency ACh elevations. Silencing aDS ACh release impaired behavioral extinction, suggesting a role for ACh elevations in down-regulating cue-reward associations. Dopamine release in aDS dipped for cues during extinction, but glutamate input onto cholinergic interneurons did not change, suggesting an intrastriatal mechanism for the emergence of ACh elevations. Our large scale measurements indicate how and where ACh dynamics can shape region-specific plasticity to gate learning and promote extinction of Pavlovian associations.

FILE DESCRIPTIONS

This repository contains the following files:



_README_Source_Data (.txt) - File with detailed information on content within each individual .zip folder that relates to a figure.

Key Resources Table (.xlsx) - Table containing details on key resources (mouse lines, virus strains, software), and the persistent identifiers for protocols and MATLAB custom-written code used and generated in this study.

Fig1 to 8 (.zip) - Individual folders contaning raw preprocessed and processed datasets for each Main Figures 1 to 8.

Supp Fig1 to 7 (.zip) - Individual folders contaning raw preprocessed and processed datasets for each Supplementary Figures 1 to 7.
DOI: 10.5281/zenodo.14728850
title: Distinct spatially organized striatum-wide acetylcholine dynamics for the learning and extinction of Pavlovian associations

description: ABSTRACT

Striatal acetylcholine (ACh) signaling has been proposed to counteract reinforcement signals to promote extinction and behavioral flexibility. ACh dips to cues and rewards may open a temporal window for associative plasticity to occur, while elevations may promote extinction. Changes in multi-phasic striatal ACh signals have been widely reported during learning, but how and where signals are distributed to enable region-specific plasticity for the learning and degradation of cue-reward associations is poorly understood. We used array fiber photometry in mice to investigate how ACh release across the striatum evolves during learning and extinction of Pavlovian associations. We report a topographic organization of opposing changes in ACh release to cues, rewards, and consummatory actions across distinct striatum regions. We localized reward prediction error encoding in particular phases of the ACh dynamics to a specific region of the anterior dorsal striatum (aDS). Positive prediction errors in the aDS were expressed in ACh dips, and negative prediction errors in long latency ACh elevations. Silencing aDS ACh release impaired behavioral extinction, suggesting a role for ACh elevations in down-regulating cue-reward associations. Dopamine release in aDS dipped for cues during extinction, but glutamate input onto cholinergic interneurons did not change, suggesting an intrastriatal mechanism for the emergence of ACh elevations. Our large scale measurements indicate how and where ACh dynamics can shape region-specific plasticity to gate learning and promote extinction of Pavlovian associations.

FILE DESCRIPTIONS

This repository contains the following files:



_README_Source_Data (.txt) - File with detailed information on content within each individual .zip folder that relates to a figure.

Key Resources Table (.xlsx) - Table containing details on key resources (mouse lines, virus strains, software), and the persistent identifiers for protocols and MATLAB custom-written code used and generated in this study.

Fig1 to 8 (.zip) - Individual folders contaning raw preprocessed and processed datasets for each Main Figures 1 to 8.

Supp Fig1 to 7 (.zip) - Individual folders contaning raw preprocessed and processed datasets for each Supplementary Figures 1 to 7.
DOI: 10.15468/dl.5da7tx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthroleptella villiersi Hewitt, 1935",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((27.1586 -33.5889,28.2048 -32.9007,25.5395 -32.9007,25.5395 -34.1098,25.6468 -34.1222,25.7787 -34.0734,25.7098 -33.9109,25.8639 -33.797,26.4806 -33.8473,27.1586 -33.5889))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031221-250525065834625/datasets/export for details.
DOI: 10.5517/ccdc.csd.cc2lxgll
title: CCDC 2410640: Experimental Crystal Structure Determination

description: Related Article: Zhi-Long Lei, Dan Tan, Jin-Tao Qin, Xiu-Jin Meng, Fei-Hu Cui, Hai-Tao Tang, Ying-Ming Pan|2025|Green Chemistry|27|6825|doi:10.1039/D5GC01138H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lxmv0
title: CCDC 2410803: Experimental Crystal Structure Determination

description: Related Article: Zhi-Long Lei, Dan Tan, Jin-Tao Qin, Xiu-Jin Meng, Fei-Hu Cui, Hai-Tao Tang, Ying-Ming Pan|2025|Green Chemistry|27|6825|doi:10.1039/D5GC01138H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m6r7v
title: CCDC 2419557: Experimental Crystal Structure Determination

description: Related Article: Yicheng He, Krishnapriya Anattil Unnikrishnan, Wenhao Yin, Rositha Kuniyil, Haifeng Du, Wusheng Guo|2025|Green Chemistry|27|6741|doi:10.1039/D5GC01888A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m89fn
title: CCDC 2421051: Experimental Crystal Structure Determination

description: Related Article: Taohong Ren, Hongjin Zhu, Xiao Yang, Dingxian Jia|2025|New J.Chem.|49|9669|doi:10.1039/D5NJ00483G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m89gp
title: CCDC 2421052: Experimental Crystal Structure Determination

description: Related Article: Taohong Ren, Hongjin Zhu, Xiao Yang, Dingxian Jia|2025|New J.Chem.|49|9669|doi:10.1039/D5NJ00483G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m89hq
title: CCDC 2421053: Experimental Crystal Structure Determination

description: Related Article: Taohong Ren, Hongjin Zhu, Xiao Yang, Dingxian Jia|2025|New J.Chem.|49|9669|doi:10.1039/D5NJ00483G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mnb4s
title: CCDC 2432605: Experimental Crystal Structure Determination

description: Related Article: Rhone P. Brocha Silalahi, Yu-Te Kuo, Tzu-Hao Chiu, Michael N. Pillay, C. W. Liu|2025|New J.Chem.|49|9965|doi:10.1039/D5NJ01571E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mnb5t
title: CCDC 2432606: Experimental Crystal Structure Determination

description: Related Article: Rhone P. Brocha Silalahi, Yu-Te Kuo, Tzu-Hao Chiu, Michael N. Pillay, C. W. Liu|2025|New J.Chem.|49|9965|doi:10.1039/D5NJ01571E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mnb6v
title: CCDC 2432607: Experimental Crystal Structure Determination

description: Related Article: Rhone P. Brocha Silalahi, Yu-Te Kuo, Tzu-Hao Chiu, Michael N. Pillay, C. W. Liu|2025|New J.Chem.|49|9965|doi:10.1039/D5NJ01571E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.c5n6hx
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Psittacanthus macrantherus Eichler",
 "Year 2020-2025"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031223-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/ds/7624535
title: Medical Domain Corpus
DOI: 10.15468/dl.uc3j5r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthroleptella villiersi Hewitt, 1935",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((18.2339 -32.5266,18.1411 -32.657,18.1007 -32.7021,18.0224 -32.6366,17.8923 -32.6419,17.754 -32.8255,17.7723 -32.9007,20.509 -32.9007,20.509 -28.5786,16.2782 -28.5786,16.4358 -28.7202,16.726 -29.1235,17.1957 -30.3752,17.6655 -31.1743,18.1322 -31.7679,18.2495 -32.2638,18.2339 -32.5266))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031222-250525065834625/datasets/export for details.
DOI: 10.15468/dl.yuxaar
title: Occurrence Download

description: A dataset containing 9255 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (United States of America, Canada, Mexico)",
 "OccurrenceStatus is Present",
 "TaxonKey is Hybognathus placitus Girard, 1856"
 ]
}

 The dataset includes 9255 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031224-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wu7s72
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthroleptella villiersi Hewitt, 1935",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.6372 -28.0032,16.2782 -28.5786,20.509 -28.5786,20.509 -24.0715,15.4933 -24.0715,15.4945 -24.1257,16.0509 -25.6631,15.6372 -28.0032))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031225-250525065834625/datasets/export for details.
DOI: 10.15468/dl.kn939c
title: Occurrence Download

description: A dataset containing 795538 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Xeno-canto - Bird sounds from around the world"
 ]
}

 The dataset includes 795538 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031218-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uxzqwa
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thomasomys ucucha Voss, 2003"
 ]
}

 The dataset includes 34 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031226-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/3amz8b
title: Laura Steger and Rick Overson Vertebrate Observations

description: This collection contains vertebrate observations made by Laura Steger and Rick Overson. The observations come primarily from the Southwestern United States and Northwestern Mexico. If you have any questions about the data in this collection, please reach out to us.
DOI: 10.15468/dl.7k36nz
title: Occurrence Download

description: A dataset containing 185 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-97.06728 15.86187,-97.06722 15.86153,-97.06739 15.86123,-97.06776 15.86105,-97.0682 15.86081,-97.06835 15.86051,-97.06816 15.86017,-97.06772 15.85991,-97.06683 15.85959,-97.06606 15.85937,-97.06543 15.85939,-97.06514 15.85977,-97.06508 15.86013,-97.06423 15.86077,-97.06346 15.86119,-97.06268 15.86143,-97.06234 15.86149,-97.0614 15.86114,-97.06105 15.86081,-97.06061 15.86002,-97.05924 15.8578,-97.05912 15.85897,-97.05827 15.85967,-97.05868 15.86046,-97.05877 15.86094,-97.059 15.86138,-97.05945 15.86187,-97.06063 15.86246,-97.06134 15.86267,-97.06234 15.86274,-97.06482 15.86235,-97.06728 15.86187))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 185 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031227-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15482/usda.adc/28689077
title: Data from: Plant morphology and a phytochrome B model reveal that the effects of far-red light on shade-avoidance-like responses persist under high light intensity

description: The dataset includes raw biometric data, lighting treatment spectrum data, and three-state PHYB model prediction data for kale 'Red Russian' and lettuce 'Rex' and 'Rouxai' grown under various combinations of far-red fractions (the fraction of far-red light to the sum of red and far-red light) and light intensities. The data were generated by Jiyong Shin and Dr. Erik S. Runkle during a study conducted in the Controlled-Environment Lighting Laboratory (CELL) at Michigan State University from 2023 to 2025. This study aimed to investigate whether the effects of the far-red fraction on shade-avoidance-like responses (e.g., leaf-shape index and specific leaf area increase) of hydroponically-grown kale and lettuce act independent of light intensities if the light intensity changes are only of red and far-red light intensity.
DOI: 10.15482/usda.adc/28689077.v1
title: Data from: Plant morphology and a phytochrome B model reveal that the effects of far-red light on shade-avoidance-like responses persist under high light intensity

description: The dataset includes raw biometric data, lighting treatment spectrum data, and three-state PHYB model prediction data for kale 'Red Russian' and lettuce 'Rex' and 'Rouxai' grown under various combinations of far-red fractions (the fraction of far-red light to the sum of red and far-red light) and light intensities. The data were generated by Jiyong Shin and Dr. Erik S. Runkle during a study conducted in the Controlled-Environment Lighting Laboratory (CELL) at Michigan State University from 2023 to 2025. This study aimed to investigate whether the effects of the far-red fraction on shade-avoidance-like responses (e.g., leaf-shape index and specific leaf area increase) of hydroponically-grown kale and lettuce act independent of light intensities if the light intensity changes are only of red and far-red light intensity.
DOI: 10.5281/zenodo.14194639
title: Cleaned spawner survey data

description: This dataset is a version of the New Salmon Escapement Database (NuSEDS) downloaded from Open Data Canada on January 22, 2024: https://open.canada.ca/data/en/dataset/c48669a3-045b-400d-b730-48aafe8c5ee6. These data have been cleaned and matched to Conservation Units by staff at the Pacific Salmon Foundation. Details of the data cleaning procedure are outlined in the Pacific Salmon Explorer Technical Report (Appendix 2) available online at https://www.salmonexplorer.ca/methods/appendix-2.html.
DOI: 10.5281/zenodo.14225367
title: Cleaned spawner survey data

description: This dataset is a version of the New Salmon Escapement Database (NuSEDS) downloaded from Open Data Canada on January 22, 2024: https://open.canada.ca/data/en/dataset/c48669a3-045b-400d-b730-48aafe8c5ee6. These data have been cleaned and matched to Conservation Units by staff at the Pacific Salmon Foundation. Details of the data cleaning procedure are outlined in the Pacific Salmon Explorer Technical Report (Appendix 2) available online at https://www.salmonexplorer.ca/methods/appendix-2.html. This revised dataset (v1, 2024-11-25) includes observed counts of zero.
DOI: 10.15468/dl.vc54pn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthroleptella villiersi Hewitt, 1935",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.4784 -23.4046,15.4933 -24.0715,20.509 -24.0715,20.509 -24.0455,20.0952 -23.5072,19.9968 -23.017,19.7843 -22.5405,19.1988 -21.8785,18.5972 -21.5447,17.8859 -21.3993,17.1626 -21.4805,16.5332 -21.7596,16.1257 -22.0882,15.8234 -22.4662,15.606 -22.8993,15.4784 -23.4046))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031229-250525065834625/datasets/export for details.
DOI: 10.15468/dl.3mrz6r
title: Occurrence Download

description: A dataset containing 4402 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Continent is North America",
 "OccurrenceStatus is Present",
 "TaxonKey is Mesembryanthemum crystallinum L.",
 "Year 1900-2025"
 ]
}

 The dataset includes 4402 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031228-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.afe2hb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Ipomoea padillae",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031230-250525065834625/datasets/export for details.
DOI: 10.15468/dl.5qu3aj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthroleptella villiersi Hewitt, 1935",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.5395 -28.5786,20.509 -28.5786,20.509 -32.9007,25.5395 -32.9007,25.5395 -28.5786))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031231-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15625960
title: Okyeame: Full Contents of the Ghanaian Literary Magazine 1961-1972

description: Okyeame [Ɔkyeame] was a literary magazine published in Ghana which appeared in eight issues between January 1961 and November 1972. The magazine featured poetry, fiction, drama and cultural commentary, as well as art work. It was published by the Ghana Society of Writers and the Ghana Writers’ Workshop, in association with the Institute of African Studies, University of Ghana, Legon, and with support variously from the Arts Council of Ghana and the Institute of Art and Culture. It was overseen by an editorial committee, and many issues were edited by Efua Sutherland.

The dataset was compiled mainly from print copies held at the School of African and Oriental Studies, University of London, with additional materials from materials from Cornell University Library and the Balme Library at the University of Ghana, Legon.