cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p995179f
title: Histopathology of zebra finches (Taeniopygia guttata) orally exposed to clothianidin (ver. 2.0, October 2019)

description: This dataset reports select histopathological changes in liver, kidney, gonad, spleen, brain, heart, skeletal muscle, lung, or adrenal gland of zebra finches exposed to 15mg/kg, 18mg/kg, 30mg/kg, 60mg/kg, 75mg/kg, 125mg/kg, or 250mg/kg clothianidin (CTD) (with controls) by gavage, in water, or on millet seed either as a single dose or for 7 days. The goal of the project is to develop a subacute neonicotinoid toxicity model using zebra finches as a model passerine. We have completed two acute toxicity trials using CTD insecticide. Based on these studies, we estimate the no observable effect level (NOAEL) and the lowest observable effect level (LOAEL) for CTD in zebra finches to be 15 and 30 mg/kg body weight, respectively, and the concentration producing a toxic effect in 50% of treated birds (EC50) to be approximately 150mg/kg. We next exposed birds for 7 days to CTD in drinking water at nominal doses of 40, 20, 4, and 0mg/kg (cumulative 240, 140, 28, and 0mg/kg CTD). Clinical signs of toxicity were not observed in any bird. Lastly, birds were gavaged daily for 7 days with 18mg/kg body weight CTD dissolved in acetone and mixed with vegetable oil. Clinical signs of toxicity were observed beginning after the fourth exposure day and were similar to signs observed in acute (125 mg/kg) CTD dosing. In order to further refine our model, we re-tested CTD treatment via drinking water (at a higher dose of 60mg/kg), exposed birds to 7 days of CTD coated millet seed (15mg/kg, 30mg/kg and 60mg/kg), and extend the follow-up time following an acute exposure to 21 days. Tissues were scanned on at least 10x objective and lesions potentially associated with neonicotinoid exposure were scored on a severity scale of 0-3 (0: absent; 1: mild; 2: moderate; 3: severe). Despite clinical signs of toxicity, there were no consistent microscopic lesions of exposure at the dose levels examined. First release: April 10, 2018 Revised: October 31, 2019 (ver. 2.0)
DOI: 10.5519/qd.y2xbiqih
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (12442 records)
DOI: 10.5066/p96yjrwr
title: Avian Influenza Virus Test Results from Active Surveillance of North American Wild Birds Collected by Department of Interior from 2006-2011

description: Influenza A viruses are one of the most significant viral groups globally with substantial impacts on human, domestic animal and wildlife health. Wild birds are the natural reservoirs for these viruses, and active surveillance within wild bird populations provides critical information about viral evolution forming the basis of risk assessments and counter measure development. Unfortunately, active surveillance programs are often resource-intensive, and thus enhancing programs for increased efficiency is paramount. Machine learning, a branch of artificial intelligence applications, provides statistical learning procedures that can be used to gain novel insights into disease surveillance systems. We use a form of machine learning, gradient boosted trees, to estimate the probability of isolating avian influenza viruses (AIV) from wild bird samples collected during surveillance for AIVs from 2006-2011 in the United States. We examined several predictive features including age, sex, bird type, geographic location and matrix gene rrRT-PCR results. Our final model had high predictive power, and only included geographic location and rRT-PCR results as important predictors. The highest predicted viral isolation probability was for samples collected from the north-central states and the south-eastern region of Alaska. Lower rRT-PCR Ct-values are associated with increased likelihood of AIV isolation, and the model estimated 16% probability of isolating AIV from samples declared negative (i.e., greater than or equal to 35 Ct-value) using the rRT-PCR screening test and standard protocols. Our model can be used to prioritize previously collected samples for isolation and rapidly evaluate AIV surveillance designs to maximize the probability of viral isolation given limited resources and laboratory capacity.
DOI: 10.5066/p969taij
title: Data on serology results for green turtles with and without fibropapillomatosis from Hawaii and Florida

description: Fibropapillomatosis (FP) is a tumor disease associated with a herpesvirus (Chelonid herpesvirus 5-ChHV5) that affects mainly green turtles globally. Understanding the epidemiology of FP has been hampered by lack of robust serological assays to monitor exposure to ChHV5. This is due in part to inability to efficiently culture the virus in vitro for neutralization assays. Here, we expressed two glycoproteins (FUS4 and FUS8) from ChHV5 using baculovirus. These proteins were immobilized on ELISA plates in their native form, and assayed for reactivity to two types of antibodies, the full length 7S and truncated 5.7S IgY. In Florida, turtles were uniformly seropositive regardless of tumor status. In contrast, in Hawaii, we detected strong antibody reactivity mainly from tumored animals with lower antibody response in non-tumored animals, including those from FP Enzootic areas. In Hawaii, turtles actively shedding ChHV5 were more seropositive than non-shedders. In trying to account for differences in serological responses to ChHV5 between Hawaii and Florida, we rejected cross reactivity of antibodies to other herpesviruses, differences in viral epitopes, or differences in procedure as likely explanations. Rather, behavioral differences between green turtles from Hawaii and Florida, respectively, have led to the emergence of biologically different viral strains. While Florida strains apparently spread independent of tumors, transmission of the Hawaiian subtype apparently relies heavily on tumor formation.
DOI: 10.5519/qd.yctkegdp
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (3990 records)
DOI: 10.5519/qd.t0bmmujg
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (3639 records)
DOI: 10.5066/p93pzgmm
title: Nitrogen, phosphorus, and suspended-sediment loads and trends measured at the Chesapeake Bay River Input Monitoring stations: Water years 1985-2020

description: Nitrogen, phosphorus, and suspended-sediment loads, and changes in loads, in major rivers across the Chesapeake Bay watershed have been calculated using monitoring data from the Chesapeake Bay River Input Monitoring (RIM) Network stations for the period 1985 through 2020. Nutrient and suspended-sediment loads and changes in loads were determined by applying a weighted regression approach called WRTDS (Weighted Regression on Time, Discharge, and Season). The load results represent the total mass of nitrogen, phosphorus, and suspended sediment that was exported from each of the RIM watersheds and were estimated using the WRTDS method with Kalman filtering. To determine the trend in loads, the annual load results are flow normalized to integrate out the year-to-year variability in river discharge. The trend in load is derived from the flow-normalized load timeseries and represents the change in load resulting from changes in sources, delays associated with storage or transport of historical inputs, and (or) implemented management actions. Four data tables are provided that describe nitrogen, phosphorus, and suspended-sediment conditions across the RIM: (1) Annual Loads, (2) Monthly Loads, (3) Trends in Annual Loads, and (4) Average Yield (mass per unit area). Additionally, essential WRTDS Input and Output files are provided.
DOI: 10.5519/qd.3w1j3m3g
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (3001 records)
DOI: 10.25919/f4m8-0b61
title: Parkes observations for project P1066 semester 2021APRS_17

description: We propose 36 hrs of Parkes observations to continue our successful Deeper, Wider, Faster (DWF) program to detect fast transients and fast radio burst (FRB) counterparts and help resolve their nature. DWF coordinates over 80 observatories worldwide at all wavelengths, from radio to gamma-ray to detect and follow-up FRBs and other elusive fast (millisecond-to-hours duration) transients. Crucially, we coordinate simultaneous deep, fast-cadenced, wide-field observations at all wavelengths to observe the same field at the same time as Parkes, enabling multi-wavelength detection before, during, and after the radio detection. Little to no multi-wavelength observations to any significant depth have been done on these timescales, leaving this parameter space underexplored. DWF coordinates major facilities to observe with Parkes, such as South Pole Telescope (mm/sub-mm), GROND (infrared), CTIO Dark Energy Camera (optical), Astrosat (UV/X-ray), HXMT (X-ray), HESS (gamma-ray), and Pierre Auger (high-energy). We perform realtime data processing and transient identification at all wavelengths that enables triggering our deep, rapid-response (within minutes) follow up programs for deep spectroscopy and imaging using the world's largest telescopes (e.g., Keck, VLT, Gemini, SALT, ATCA).
DOI: 10.5519/qd.vhq265xl
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (3523 records)
DOI: 10.5517/ccdc.csd.cc27skj4
title: CCDC 2079186: Experimental Crystal Structure Determination

description: Related Article: Rim Aissa, Samia Guezane-Lakoud, Lynda GALI, Martial Toffano, Anna Ignaczak, Marta Adamiak, Mounia Merabet-Khelassi, Regis Guillot, Louisa Aribi-Zouioueche|2021|J.Mol.Struct.|1247|131336|doi:10.1016/j.molstruc.2021.131336
DOI: 10.5519/qd.lqvk5wbz
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5963 records)
DOI: 10.5519/qd.hssqf5me
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (8550 records)
DOI: 10.3886/e115010v2-96400
title: Data and Code for: Cumulative Impacts of Conditional Cash Transfer Programs: Experimental Evidence from Indonesia

description: Conditional cash transfers provide income and promote human capital investments. Yet, evaluating their longitudinal impacts is hard, as most experimental evaluations treat control locations after a few years. We examine such impacts in Indonesia after six years, using an experimental rollout in which the experiment remained largely intact. We find static effects on many targeted indicators: childbirth using trained professionals increased dramatically, and under-15 children not in school fell by half. We observe impacts requiring cumulative investments: stunting fell by 23 percent. While human capital accumulation increased, the transfers did not lead to transformative economic change for recipient households.
DOI: 10.5519/qd.vrmqu43j
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (21551 records)
DOI: 10.5517/ccdc.csd.cc26jjny
title: CCDC 2041680: Experimental Crystal Structure Determination

description: Related Article: Sabnam Begum, Tushar Kanti Chakraborty|2021|J.Org.Chem.|86|11812|doi:10.1021/acs.joc.1c01243
DOI: 10.5517/ccdc.csd.cc278s7k
title: CCDC 2064018: Experimental Crystal Structure Determination

description: Related Article: Konstantin F. Suzdalev, Julia V. Vyalyh, Valery V. Tkachev, Ekaterina A. Lysenko, Oleg N. Burov, Anton V. Lisovin, Mikhail E. Kletskii, Sergey V. Kurbatov|2021|J.Org.Chem.|86|11698|doi:10.1021/acs.joc.1c01200
DOI: 10.5281/zenodo.5513043
title: Cross-Register Authorship Attribution Corpus

description: This corpus contains writings of eight authors known to have written in both vernacular and classical Chinese. The corpus has 4.2 million Chinese characters and can be useful in authorship identification research. The file README.md contains a full description of the data. All materials in this archive are in the public domain.
DOI: 10.5281/zenodo.5513042
title: Cross-Register Authorship Attribution Corpus

description: This corpus contains writings of eight authors known to have written in both vernacular and classical Chinese. The corpus has 4.2 million Chinese characters and can be useful in authorship identification research. The file README.md contains a full description of the data. All materials in this archive are in the public domain.
DOI: 10.6084/m9.figshare.15169605
title: data

description: Urban Spatial Structure Recognition Based on Multi-source Geographic Data Based on Spatial Complex Network
DOI: 10.6084/m9.figshare.15169605.v6
title: data

description: Urban Spatial Structure Recognition Based on Multi-source Geographic Data Based on Spatial Complex Network
DOI: 10.6084/m9.figshare.15169605.v5
title: data

description: Urban Spatial Structure Recognition Based on Multi-source Geographic Data Based on Spatial Complex Network
DOI: 10.17632/sptbjdwsdj.1
title: All life

description: The data contains
DOI: 10.17632/7c7j3w8596.1
title: Data for: Epidemiological profile of patients affected by traumatic brain injury admitted at a medium complexity hospital in a remote area of Amazonas, 2017-2019

description: Data and graphics used to provide a better look at the situation of Traumatic Brain Injury in Coari - Amazonas.
DOI: 10.17632/5z7k2fbd5d.1
title: SARS-CoV-2 CodonUsage Data

description: Synonymous APOBEC and OTHER variant data with associated sampling date and codon usage information.
DOI: 10.17632/r2bdwmsjmm.1
title: Models of Magnetic Nanoparticles and Vascular Tissue

description: Magnetically guided drug delivery systems offer localized, targeted drug delivery using magnetic nanoparticles. The capture of the nanoparticles by the stent struts, under relevant magnetic field and blood velocity was modeled using COMSOL Multiphysics. The coronary artery was modeled using a 2D axisymmetric model with stainless steel stent struts. A Magnetic field of 1 T was applied to magnetize the stent struts. Three different strut geometries were compared for their effect of the capture efficiency. The model had a capture efficiency of 34-42%. Ex vivo organ culture studies using porcine right coronary arteries were performed to validate the capture efficiency modeled. The arteries were conditioned dynamically in an organ culture bioreactor and had an average capture efficiency of 31%.
DOI: 10.17632/4ykyr6g8j9.3
title: FASTQ file of spontaneously fermented Ethiopian honey wine, Tej

description: The aim of this research was to get an insight on the microbiota and microbiome involved in the spontaneously fermented Ethiopian honey wine, Tej. About 21 Tej samples were collected from three locations (Addis Ababa, Bahir Dar and Debre Markose) of Ethiopia. Due the natural fermentation system, our research hypothesis was, there will be a variation in the microbial community dominance among the samples collected from the same area and/or across the samples from different areas. However, the dominant bacterial or fungal genus were almost similar for both case of sampling situations. Nonetheless, these data were generated via high-through-put sequencing of the DNA that was extracted from the collected Tej samples. These FASTQ files are the raw data, that has to be pass through bioinformatics analysis using QIIAM 2, web-based calypso, and R studio to get a meaning full data. Meanwhile, after analyzing these raw data, the bacterial community structure was dominated by the genera of Lactobacillus (53.15%) and Zymomonas (38.41%). Similarly, the fungal community structure was exclusively dominated by genus of Saccharomyces (99.66%). Furthermore, both bacterial and fungal communities had shown no statistically significant differences in alpha diversity analysis based on the area of sample collection. However, the bacterial communities had a statically significant difference in Unweighted Unifrac beta diversity analysis. Nevertheless, still the bacterial quantitative beta diversity measurement had demonstrated that all of the samples had a similar dominate tax.
DOI: 10.25919/yhd2-v183
title: Remnant Rarity Index (RRI)

description: The Remnant Rarity Index (RRI) describes the proportion of each NVIS major vegetation group remaining in each IBRA bioregion relative to the 1750 estimates. This approach is conceptually similar to biological status of ecological vegetation communities (EVCs) in Victoria and the biodiversity status of remnant regional ecosystems in Queensland. The RRI is therefore useful as a simple proxy for conservation status for analyses that cross jurisdictional boundaries. The RRI is solely dependent upon the difference between pre-1750 and extant vegetation mapping and does not consider additional processes such as land degradation or threatening processes.
DOI: 10.5517/ccdc.csd.cc27s4bj
title: CCDC 2078777: Experimental Crystal Structure Determination

description: Related Article: Sabnam Begum, Tushar Kanti Chakraborty|2021|J.Org.Chem.|86|11812|doi:10.1021/acs.joc.1c01243
DOI: 10.5517/ccdc.csd.cc27s4ck
title: CCDC 2078778: Experimental Crystal Structure Determination

description: Related Article: Sabnam Begum, Tushar Kanti Chakraborty|2021|J.Org.Chem.|86|11812|doi:10.1021/acs.joc.1c01243
DOI: 10.6084/m9.figshare.16632697.v1
title: Taiwan elementary students' stereotypes and intercultural affects towards Islam study

description: In Taiwan, the 2014 12-year Basic Education Curriculum amendments emphasize cultural and global understanding as core competencies. With more than 6 years of implementation, it would be therefore interesting to learn what elementary school students think of Islam. Anchoring on the concepts of intercultural competency development, stereotypes are said to be related to cognitive knowledge, intercultural behavioral abilities, and attitudes. A survey instrument was developed and validated to collect information on stereotypes, skills in intercultural interaction, and attitudes toward Islam. Additionally, cognitive knowledge of Islam was also tested. A total of 712 students participated in the study.
DOI: 10.5517/ccdc.csd.cc27yy49
title: CCDC 2084351: Experimental Crystal Structure Determination

description: Related Article: Shuxuan Liu, Hui Qian, Tianyu Zhang, Hongling Xie, Zhengyu Han, Wengang Guo, Hai Huang, Jianwei Sun|2021|Angew.Chem.,Int.Ed.|60|21272|doi:10.1002/anie.202108258
DOI: 10.6084/m9.figshare.16632697
title: Taiwan elementary students' stereotypes and intercultural affects towards Islam study

description: In Taiwan, the 2014 12-year Basic Education Curriculum amendments emphasize cultural and global understanding as core competencies. With more than 6 years of implementation, it would be therefore interesting to learn what elementary school students think of Islam. Anchoring on the concepts of intercultural competency development, stereotypes are said to be related to cognitive knowledge, intercultural behavioral abilities, and attitudes. A survey instrument was developed and validated to collect information on stereotypes, skills in intercultural interaction, and attitudes toward Islam. Additionally, cognitive knowledge of Islam was also tested. A total of 712 students participated in the study.
DOI: 10.5517/ccdc.csd.cc280p33
title: CCDC 2086024: Experimental Crystal Structure Determination

description: Related Article: Emmanouil Broumidis, Callum M. S. Jones, Maria Koyioni, Andreas Kourtellaris, Gareth O. Lloyd, Jose Marques-Hueso, Panayiotis A. Koutentis, Filipe Vilela|2021|RSC Advances|11|29102|doi:10.1039/D1RA06263H
DOI: 10.5517/ccdc.csd.cc281wqy
title: CCDC 2087190: Experimental Crystal Structure Determination

description: Related Article: Ye Lu, Dong Liu, Yue-Jian Lin, Zhen-Hua Li, F. Ekkehardt Hahn, Guo-Xin Jin|2021|J.Am.Chem.Soc.|143|12404|doi:10.1021/jacs.1c06689
DOI: 10.5517/ccdc.csd.cc281x08
title: CCDC 2087199: Experimental Crystal Structure Determination

description: Related Article: Ye Lu, Dong Liu, Yue-Jian Lin, Zhen-Hua Li, F. Ekkehardt Hahn, Guo-Xin Jin|2021|J.Am.Chem.Soc.|143|12404|doi:10.1021/jacs.1c06689
DOI: 10.5517/ccdc.csd.cc285zr6
title: CCDC 2091128: Experimental Crystal Structure Determination

description: Related Article: Ziyong Wang, Jason Wu, Walid Lamine, Bo Li, Jean-Marc Sotiropoulos, Anna Chrostowska, Karinne Miqueu, Shih-Yuan Liu|2021|Angew.Chem.,Int.Ed.|60|21231|doi:10.1002/anie.202108534
DOI: 10.5517/ccdc.csd.cc285zs7
title: CCDC 2091129: Experimental Crystal Structure Determination

description: Related Article: Ziyong Wang, Jason Wu, Walid Lamine, Bo Li, Jean-Marc Sotiropoulos, Anna Chrostowska, Karinne Miqueu, Shih-Yuan Liu|2021|Angew.Chem.,Int.Ed.|60|21231|doi:10.1002/anie.202108534
DOI: 10.6084/m9.figshare.14502474
title: Genetic data for Aurelia systematics

description: Sequence sets, alignments and tree files associated with <b>Lawley, J.W., Gamero-Mora, E., Maronna, M.M., Chiaverano, L.M., Stampar, S.N., Hopcroft, R.R., Collins, A.G., Morandini, A.C. 2021. The importance of molecular characters when morphological variability hinders diagnosability: systematics of the moon jellyfish genus <i>Aurelia </i>(Cnidaria: Scyphozoa). PeerJ https://doi.org/10.7717/peerj.11954</b>.<br><b>See below a description of the attached files</b>. When applicable, just replace the word (Marker) for 16S, COI, ITS1 or 28S (for COI files, disregard the "-ip_ia1" that appears in parentheses in filenames). For relevant codes used for molecular analyses based on these files see github.com/lawleyjw/Aurelia.<br>- (Marker)-Aurelia-seqs.fasta - Sequence set used to generate (Marker)-Aurelia(-ip_ia1).fasta. Sequence IDs normally appear as "&gt;(isolate/acession)-(previous species ID)-(sampling locality)".<br>- (Marker)-Aurelia-seqs-UPDATED.fasta - Same sequence set as above, but sequence IDs appear with updated species names as "&gt;(accession)-(updated species ID)|(previous sequence ID, as in (Marker)-Aurelia-seqs.fasta above)".<br>- (Marker)-Aurelia(-ip_ia1).fasta - Alignment used to generate (Marker)-Aurelia.tre. Sequence IDs normally appear as "&gt;(isolate/acession)-(previous species ID)-(sampling locality)".<br>- (Marker)-Aurelia(-ip_ia1)-UPDATED.fasta - Same alignment as above, but sequence IDs appear with updated species names as "&gt;(accession)-(updated species ID)|(previous sequence ID, as in (Marker)-Aurelia(-ip_ia1).fasta above)".<br>- (Marker)-Aurelia.tre - Parsimony tree file in Newick format with branch lengths, derived from (Marker)-Aurelia(-ip_ia1).fasta; for Goodman-Bremer support values and bootstrap resampling frequencies see Fig. S4-S7 in Lawley et al. (2021).<br>- concat-Aurelia.nex - Concatenated sequence matrix in Nexus file (from Sequence Matrix), including sequences of all markers (based on single-marker alignments) for some representative specimens of each species. This file was used to generate concat-Aurelia.tre and concatML-Aurelia.tre. For details on species composition and species ID see Table S5 in Lawley et al. (2021).<br>- concat-Aurelia.tre - Concatenated parsimony tree file in Newick format with branch lengths, derived from concat-Aurelia.nex. For Goodman-Bremer support values and bootstrap resampling frequencies see Fig. 9 in Lawley et al. (2021).<br>- concatML-Aurelia.tre - Concatenated maximum likelihood tree file in Nexus format (from FigTree), derived from concat-Aurelia.nex, including SH-aLRT and ultrafast bootstrap values, respectively (see Fig. S3 in Lawley et al., 2021).