cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7852320
title: Raw ILLUMINA NGS data from study on Mouse virulence of European type III and type II x III-recombinant natural clones of Toxoplasma gondii is not always linked to the ROP18 and ROP5 genotype

description: Whole genome sequences of naturally recombinant European type III and type II x III clones were analyzed While two of the type II x III recombinants showed an intermediate mouse virulence, a type III clone was highly virulent Of the three highly virulent clones, only two showed a virulent <em>ROP18</em>-<em>ROP5</em> allele combination The mouse virulent type III clone without virulent <em>ROP18</em>-<em>ROP5</em> allele combination showed the highest level of ROP5 mRNA expression Two genetically similar clones showed apparent differences in virulence and corresponding IL-12 mRNA expression in infected macrophages
DOI: 10.5281/zenodo.7852321
title: Raw ILLUMINA NGS data from study on Mouse virulence of European type III and type II x III-recombinant natural clones of Toxoplasma gondii is not always linked to the ROP18 and ROP5 genotype

description: Whole genome sequences of naturally recombinant European type III and type II x III clones were analyzed While two of the type II x III recombinants showed an intermediate mouse virulence, a type III clone was highly virulent Of the three highly virulent clones, only two showed a virulent <em>ROP18</em>-<em>ROP5</em> allele combination The mouse virulent type III clone without virulent <em>ROP18</em>-<em>ROP5</em> allele combination showed the highest level of ROP5 mRNA expression Two genetically similar clones showed apparent differences in virulence and corresponding IL-12 mRNA expression in infected macrophages
DOI: 10.5281/zenodo.7857851
title: LASHA data dictionary for redcap

description: RedCap Data dictionary for LASHA record
DOI: 10.5281/zenodo.7857850
title: LASHA data dictionary for redcap

description: RedCap Data dictionary for LASHA record
DOI: 10.15151/esrf-es-1100165980
title: Study of surface degradation phenomena in cadmium red paints via bulk and surface sensitive XAS

description: The degradation phenomena of cadmium red (CdS1-xSex) oil paint pigments is a process that starts from the surface. We wish to study this process with a depth-selective method by using Se K-edge XAFS spectroscopy and comparing data collected simultaneously in X-ray fluorescence Yield (FY) and total electron yield (TEY) detection modes. We intend to determine the oxidation state, coordination numbers and interatomic distances of Se-compounds. These analyses will permit to define how some intrinsic properties of the pigment (crystal defects/Se content) and environmental agents influence Se speciation within cadmium red paints.
DOI: 10.15151/esrf-es-1100167437
title: XAS study of nanosized and aggregation effect in Au nanoparticles for biomedical applications

description: Metal nanoparticles (NPs), such as Au, are widely employed for biomedical applications in the fields of diagnosis or drug/gene among others. They exhibit a variety of properties, being the localized surface plasmon resonance (LSPR) one of the most recognized. The LSPR band depends on several properties of the NPs and surrounding media, which alter the physical properties and thus the final response in their specific application. The aim of this proposal is to study, by XANES and EXAFS techniques at the Au L3-edge, the electronic and structural modifications induced in different Au NPs by changing their size, shape and aggregation state to correlate with the plasmonic and photothermal response. 3D aggregates of different dimensions will be analyzed determining the structural variations and the disorder effects generated in the nanostructures by the biological media. Cluster formation of NPs depends on the size and shape of NPs and it is a key parameter in the biomedical applications.
DOI: 10.15151/esrf-es-1100168561
title: Characterization of the Transient Species Following UV Excitation of Fe(CN)6 in Solution

description: The molecular properties of water serves an important role in both chemistry and biology, as individual water molecules can take the role of active participants in solution-phase reactions. Though water solvation has been studied extensively, a good description of the micro-structure of the solvation shells surrounding water solvated complexes remains elusive. In this experiment, we aim to study water solvation by determining the structure of the photoaquated species which forms following light-induced ligand-dissociation of [Fe(CN)6]4- in aqueous solution. Further, we will further investigate the structural changes of the solvation cage following photo-abstraction of an electron by photo-exciting at a slightly shorter wavelength. We propose to study these phenomena with time resolved wide angle X-ray scattering. Leveraging the structural and temporal sensitivity of sub-nanosecond X-ray pulses to gain new insights into the dynamics of aqueous solvation.
DOI: 10.15151/esrf-es-1084471100
title: Cephalopod visual circuits

description: Cephalopods present one of the most complex invertebrate nervous systems, and exhibit elaborated behaviours, many of which are driven by their advanced visual system. We are generating the first synaptic resolution connectome of the visual circuits of a cephalopod, using the pygmy squid, Idiosepius hallami. The reduced dimensions of this miniaturised species enable the acquisition of the retina and optic lobe with an enhanced focused ion beam scanning electron microscope (FIBSEM). To bridge the detailed visual circuits afforded by our FIBSEM volume with behaviours such as learning or camouflage, the efferent optic lobe nerve tracts have to be followed to other brain regions, and from there onwards to the legs for coordinating locomotion or to the skin for camouflage. An X-ray nanotomography volume of the whole animal will provide that bridge and also guide future targeted FIBSEM volume acquisitions necessary to understand the sensorimotor transformations driving cephalopod behaviour.
DOI: 10.57745/6oflst
title: PH-StraightSpine-BracedMuscles-Head-A_x.tab

description: :unav
DOI: 10.57745/jdn2yk
title: PH-StraightSpine-RelaxedMuscles-Sternum-A_x.tab

description: :unav
DOI: 10.57745/lfdsb9
title: SH-StraightSpine-RelaxedMuscles-S1-R_y.tab

description: :unav
DOI: 10.57745/ep0ol6
title: PL-StraightSpine-RelaxedMuscles-S1-R_y.tab

description: :unav
DOI: 10.57745/iv4ekc
title: PH-StraightSpine-BracedMuscles-Sternum-R_y.tab

description: :unav
DOI: 10.57745/ltqvnf
title: PL-StraightSpine-RelaxedMuscles-Head-A_x.tab

description: :unav
DOI: 10.57745/oj2etb
title: PL-StraightSpine-RelaxedMuscles-Sternum-R_y.tab

description: :unav
DOI: 10.57745/pjqteg
title: PH-SaggingSpine-RelaxedMuscles-S1-A_x.tab

description: :unav
DOI: 10.57745/ps1lsy
title: SH-StraightSpine-RelaxedMuscles-Head-R_y.tab

description: :unav
DOI: 10.57745/cgbpdq
title: PH-StraightSpine-BracedMuscles-Head-R_y.tab

description: :unav
DOI: 10.57745/cl2usq
title: SL-StraightSpine-RelaxedMuscles-T1-R_y.tab

description: :unav
DOI: 10.57745/mbq3wl
title: SL-StraightSpine-RelaxedMuscles-Head-R_y.tab

description: :unav
DOI: 10.57745/rqzx0c
title: SH-StraightSpine-RelaxedMuscles-Sternum-A_x.tab

description: :unav
DOI: 10.57745/u5mzzo
title: PL-StraightSpine-RelaxedMuscles-Sternum-A_x.tab

description: :unav
DOI: 10.57745/x4fsqd
title: PH.tab

description: PH sled impulse
DOI: 10.57745/948dhm
title: PH-StraightSpine-RelaxedMuscles-Head-R_y.tab

description: :unav
DOI: 10.57745/czccnt
title: PH-StraightSpine-BracedMuscles-T1-R_y.tab

description: :unav
DOI: 10.57745/fb7p7z
title: PH-SaggingSpine-RelaxedMuscles-T1-A_x.tab

description: :unav
DOI: 10.57745/g97tsc
title: SL-StraightSpine-RelaxedMuscles-S1-R_y.tab

description: :unav
DOI: 10.57745/ohitig
title: PH-StraightSpine-RelaxedMuscles-T1-R_y.tab

description: :unav
DOI: 10.57745/qjjtrq
title: SL-StraightSpine-RelaxedMuscles-T1-A_x.tab

description: :unav
DOI: 10.57745/0mbvyw
title: PH-StraightSpine-BracedMuscles-S1-A_x.tab

description: :unav
DOI: 10.57745/7kah1f
title: PL-StraightSpine-RelaxedMuscles-S1-A_x.tab

description: :unav
DOI: 10.57745/8twyvt
title: PL-StraightSpine-RelaxedMuscles-T1-R_y.tab

description: :unav
DOI: 10.57745/nyakph
title: PH-StraightSpine-RelaxedMuscles-Head-A_x.tab

description: :unav
DOI: 10.57745/nyoxds
title: SL-StraightSpine-RelaxedMuscles-Sternum-R_y.tab

description: :unav
DOI: 10.57745/sucpni
title: PL-StraightSpine-RelaxedMuscles-Head-R_y.tab

description: :unav
DOI: 10.57745/cndjhm
title: PH-StraightSpine-BracedMuscles-Sternum-A_x.tab

description: :unav
DOI: 10.57745/ox8cwl
title: PH-SaggingSpine-RelaxedMuscles-Head-A_x.tab

description: :unav
DOI: 10.57745/pttkbl
title: PL-StraightSpine-BracedMuscles-Sternum-A_x.tab

description: :unav
DOI: 10.57745/rdpapf
title: PL-StraightSpine-BracedMuscles-T1-A_x.tab

description: :unav
DOI: 10.57745/vpauj7
title: PH-StraightSpine-RelaxedMuscles-Sternum-R_y.tab

description: :unav
DOI: 10.57745/ecotr4
title: SL-StraightSpine-RelaxedMuscles-Sternum-A_x.tab

description: :unav
DOI: 10.57745/ekk4zc
title: PH-SaggingSpine-RelaxedMuscles-Head-R_y.tab

description: :unav
DOI: 10.57745/eyapol
title: PH-StraightSpine-BracedMuscles-T1-A_x.tab

description: :unav
DOI: 10.57745/hkywza
title: PH-SaggingSpine-RelaxedMuscles-Sternum-R_y.tab

description: :unav
DOI: 10.57745/m3foqx
title: SH-StraightSpine-RelaxedMuscles-Head-A_x.tab

description: :unav
DOI: 10.57745/p7jnsy
title: PL-StraightSpine-BracedMuscles-Head-A_x.tab

description: :unav
DOI: 10.57745/wlk2e2
title: SH-StraightSpine-RelaxedMuscles-T1-R_y.tab

description: :unav
DOI: 10.57745/6jhjcc
title: PH-StraightSpine-RelaxedMuscles-S1-R_y.tab

description: :unav
DOI: 10.57745/cl5ics
title: PL.tab

description: PL sled impulse
DOI: 10.57745/djoylw
title: PL-StraightSpine-BracedMuscles-S1-A_x.tab

description: :unav
DOI: 10.57745/nkajv9
title: PL-StraightSpine-RelaxedMuscles-T1-A_x.tab

description: :unav
DOI: 10.57745/tlqtny
title: PL-StraightSpine-BracedMuscles-Head-R_y.tab

description: :unav
DOI: 10.57745/cj5dta
title: SL-StraightSpine-RelaxedMuscles-S1-A_x.tab

description: :unav
DOI: 10.57745/gh1xqs
title: PH-StraightSpine-BracedMuscles-S1-R_y.tab

description: :unav
DOI: 10.57745/k9wb5u
title: SL-StraightSpine-RelaxedMuscles-Head-A_x.tab

description: :unav
DOI: 10.57745/sbpjfl
title: PH-StraightSpine-RelaxedMuscles-T1-A_x.tab

description: :unav
DOI: 10.57745/vhm4ib
title: SH-StraightSpine-RelaxedMuscles-S1-A_x.tab

description: :unav
DOI: 10.57745/wcnntn
title: PL-StraightSpine-BracedMuscles-T1-R_y.tab

description: :unav
DOI: 10.57745/bmx6rf
title: PH-SaggingSpine-RelaxedMuscles-T1-R_y.tab

description: :unav
DOI: 10.57745/esgacw
title: SL.tab

description: SL sled impulse
DOI: 10.57745/fnvayd
title: SH.tab

description: SH sled impulse
DOI: 10.57745/oo8mlu
title: PH-SaggingSpine-RelaxedMuscles-S1-R_y.tab

description: :unav
DOI: 10.57745/pcnuag
title: PL-StraightSpine-BracedMuscles-Sternum-R_y.tab

description: :unav
DOI: 10.57745/toaa0g
title: SH-StraightSpine-RelaxedMuscles-T1-A_x.tab

description: :unav
DOI: 10.57745/xkwp8k
title: PL-StraightSpine-BracedMuscles-S1-R_y.tab

description: :unav
DOI: 10.57745/4dapti
title: PH-StraightSpine-RelaxedMuscles-S1-A_x.tab

description: :unav
DOI: 10.57745/kmbzxl
title: ReadMe.txt

description: :unav
DOI: 10.57745/llgbcy
title: SH-StraightSpine-RelaxedMuscles-Sternum-R_y.tab

description: :unav
DOI: 10.57745/uggydw
title: PH-SaggingSpine-RelaxedMuscles-Sternum-A_x.tab

description: :unav
DOI: 10.6084/m9.figshare.20448702
title: Placostylus stable isotopes

description: Data used in the paper " High-resolution stable isotope profiles from shells of the land snail <em>Placostylus </em>reveal contrasting patterns between snails originating from New Zealand and New Caledonia". Contains stable isotopic values from nine <em>Placostylus </em>shells.
DOI: 10.6084/m9.figshare.20448702.v2
title: Placostylus stable isotopes

description: Data used in the paper " High-resolution stable isotope profiles from shells of the land snail <em>Placostylus </em>reveal contrasting patterns between snails originating from New Zealand and New Caledonia". Contains stable isotopic values from nine <em>Placostylus </em>shells.
DOI: 10.6084/m9.figshare.21777161
title: A species-level trait dataset of bats in Europe and beyond

description: Knowledge of species’ functional traits is essential for understanding biodiversity patterns, predicting the impacts of global environmental changes, and assessing the efficiency of conservation measures. Bats are major components of mammalian diversity and occupy a variety of ecological niches and geographic distributions. However, an extensive compilation of their functional traits and ecological attributes is still missing. Here we present EuroBaTrait, the most comprehensive and up-to-date trait database covering 47 European bat species. The database includes data on 118 traits including genetic composition, physiology, morphology, acoustic signature, climatic associations, foraging habitat, roost type, diet, spatial behaviour, life history, pathogens, phenology, and distribution. We compiled the bat trait data obtained from three main sources: (i) a systematic literature and database search, (ii) unpublished data from European bat experts, and (iii) observations from large-scale monitoring programs. EuroBaTrait is designed to provide an important data source for comparative and trait-based analyses at the species or community level. The database also exposes knowledge gaps in species, geographic and trait coverage, highlighting priorities for future data collection. <br> The database consists of 16 tables linked by unique identifiers. The “Taxon” table includes the full scientific name and family of all taxa. The “Trait description” table represents the metadata, in which we describe the different traits (name, category, unit, data type) and define each trait. The “Trait reference” table lists the full references used to build the database. The database also includes one table per trait category (e.g. “Acoustic signature”) with the core observation values and associated information.
DOI: 10.6084/m9.figshare.21777161.v1
title: A species-level trait dataset of bats in Europe and beyond

description: Knowledge of species’ functional traits is essential for understanding biodiversity patterns, predicting the impacts of global environmental changes, and assessing the efficiency of conservation measures. Bats are major components of mammalian diversity and occupy a variety of ecological niches and geographic distributions. However, an extensive compilation of their functional traits and ecological attributes is still missing. Here we present EuroBaTrait, the most comprehensive and up-to-date trait database covering 47 European bat species. The database includes data on 118 traits including genetic composition, physiology, morphology, acoustic signature, climatic associations, foraging habitat, roost type, diet, spatial behaviour, life history, pathogens, phenology, and distribution. We compiled the bat trait data obtained from three main sources: (i) a systematic literature and database search, (ii) unpublished data from European bat experts, and (iii) observations from large-scale monitoring programs. EuroBaTrait is designed to provide an important data source for comparative and trait-based analyses at the species or community level. The database also exposes knowledge gaps in species, geographic and trait coverage, highlighting priorities for future data collection. <br> The database consists of 16 tables linked by unique identifiers. The “Taxon” table includes the full scientific name and family of all taxa. The “Trait description” table represents the metadata, in which we describe the different traits (name, category, unit, data type) and define each trait. The “Trait reference” table lists the full references used to build the database. The database also includes one table per trait category (e.g. “Acoustic signature”) with the core observation values and associated information.
DOI: 10.6084/m9.figshare.22651816
title: Data from Sabesan et al., 2023

description: This dataset contains the ABR recordings and a subset of the IC recordings analyzed in Sabesan et al., 2023. ABR The matlab file ABR_Data contains a structure with 12 entries, one for each experimental animal. Each entry has the following fields: <em><strong>spl_Left_Zero_Attn, spl_Right_Zero_Attn: </strong></em> the sound level in dB SPL measured by the ER10B+ probe microphone for each frequency with zero attenuation <em><strong>avg_waveforms:</strong></em> the average ABR waveform for each frequency and intensity [samples x frequencies x attenuations x channels] <em><strong>attns, freqs_kHz:</strong></em> the attenuations and frequencies corresponding to the indices in avg_waveforms <em><strong>type:</strong></em> the hearing status of the animal <em><strong>animal_id:</strong></em> the unique identifier for the animal IC The matlab file IC_Data contains a structure with 12 entries, one for each experimental animal. Each entry has the following fields: <em><strong>trial_1, trial_2: </strong></em> the multi-unit activity recorded on 512 channels in response to 5 minutes of speech from the TIMIT database presented at 65 dB SPL [time bins x channels]; each element of the matrix indicates the spike count in one 1.3 ms bin (exactly 32 samples of the corresponding audio) <em><strong>type:</strong></em> the hearing status of the animal <em><strong>animal_id:</strong></em> the unique identifier for the animal Sound The matlab file Sound contains the speech that elicited the responses in IC_Data. The sampling rate is 24414.0625 <br> Frames The zip file Ex_Frames_Zip contains a small dataset that can be used to the test the code for DNN model training that is available at github.com/nicklesica/dnn <br>
DOI: 10.5517/ccdc.csd.cc2c70f2
title: CCDC 2181483: Experimental Crystal Structure Determination

description: Related Article: Suzuka Iwasaki, Yusuke Miyake, Hiroaki Imoto, Kensuke Naka|2022|Chem.-Eur.J.|28|e202202084|doi:10.1002/chem.202202084
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c70g3
title: CCDC 2181484: Experimental Crystal Structure Determination

description: Related Article: Suzuka Iwasaki, Yusuke Miyake, Hiroaki Imoto, Kensuke Naka|2022|Chem.-Eur.J.|28|e202202084|doi:10.1002/chem.202202084
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c70h4
title: CCDC 2181485: Experimental Crystal Structure Determination

description: Related Article: Suzuka Iwasaki, Yusuke Miyake, Hiroaki Imoto, Kensuke Naka|2022|Chem.-Eur.J.|28|e202202084|doi:10.1002/chem.202202084
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c70j5
title: CCDC 2181486: Experimental Crystal Structure Determination

description: Related Article: Suzuka Iwasaki, Yusuke Miyake, Hiroaki Imoto, Kensuke Naka|2022|Chem.-Eur.J.|28|e202202084|doi:10.1002/chem.202202084
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c70k6
title: CCDC 2181487: Experimental Crystal Structure Determination

description: Related Article: Suzuka Iwasaki, Yusuke Miyake, Hiroaki Imoto, Kensuke Naka|2022|Chem.-Eur.J.|28|e202202084|doi:10.1002/chem.202202084
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c70l7
title: CCDC 2181488: Experimental Crystal Structure Determination

description: Related Article: Suzuka Iwasaki, Yusuke Miyake, Hiroaki Imoto, Kensuke Naka|2022|Chem.-Eur.J.|28|e202202084|doi:10.1002/chem.202202084
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c70m8
title: CCDC 2181489: Experimental Crystal Structure Determination

description: Related Article: Suzuka Iwasaki, Yusuke Miyake, Hiroaki Imoto, Kensuke Naka|2022|Chem.-Eur.J.|28|e202202084|doi:10.1002/chem.202202084
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c70n9
title: CCDC 2181490: Experimental Crystal Structure Determination

description: Related Article: Suzuka Iwasaki, Yusuke Miyake, Hiroaki Imoto, Kensuke Naka|2022|Chem.-Eur.J.|28|e202202084|doi:10.1002/chem.202202084
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c70pb
title: CCDC 2181491: Experimental Crystal Structure Determination

description: Related Article: Suzuka Iwasaki, Yusuke Miyake, Hiroaki Imoto, Kensuke Naka|2022|Chem.-Eur.J.|28|e202202084|doi:10.1002/chem.202202084
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c73wm
title: CCDC 2181590: Experimental Crystal Structure Determination

description: Related Article: Jia‐Bin Pan, Xuan‐Ge Zhang, Yi‐Fan Shi, Ai‐Cui Han, Yu‐Jia Chen, Jing Ouyang, Mao‐Lin Li, Qi‐Lin Zhou|2023|Angew.Chem.,Int.Ed.|62|e202300691|doi:10.1002/anie.202300691
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.