cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.u98k5p
title: Occurrence Download

description: A dataset containing 127 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heliconius ricini (Linnaeus, 1758)"
 ]
}

 The dataset includes 127 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0214291-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wza74g
title: Occurrence Download

description: A dataset containing 4323 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Japan",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Akebia Decne."
 ]
}

 The dataset includes 4323 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0218201-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rpvodb
title: Occurrence Download

description: A dataset containing 169624270 species occurrences available in GBIF matching the query:
{
 "or" : [
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Living Specimen"
 ]
}

 The dataset includes 169624270 records from 7167 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002468-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29163251
title: Appendix: Statements and factor arrays

description: This appendix includes factor array data used in the study titled "Teachers’ Enactment of ICT Affordances in Secondary Level Rural English Classrooms: A Q Methodological Study"
DOI: 10.15468/dl.swwa6g
title: Occurrence Download

description: A dataset containing 72409 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Silybum marianum (L.) Gaertn."
 ]
}

 The dataset includes 72409 records from 1118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004538-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/gxh-lp6-xbk
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lxl-vhh-tfd
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jr3-e8z-ewd
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4zx-hc9-z4y
title: Ostracoda Latreille, 1802

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kv4-xfy-3ke
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gzh-psf-3a6
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z8g-32d-4tk
title: Echinoidea Schumacher, 1817

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4wn-yb8-7rd
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cxq-2fg-24g
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/63w-r9z-vhq
title: Amphistegina lessonii d'Orbigny in Deshayes, 1830

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y9f-88z-7xw
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cm0-y9p-w9k
title: †Spiroclypeus tidoenganensis van der Vlerk, 1925

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pqg-plx-9c7
title: Martinottiella communis (d'Orbigny, 1846)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w50-0s7-8z5
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7r3-r02-s2n
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x4f-0jc-2rx
title: Sphaerogypsina globulus (Reuss, 1848)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cbg-5p3-692
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wvl-v0k-krj
title: Operculina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/18y-05l-w5h
title: Abyla Quoy & Gaimard, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lcz-gt8-ln7
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rbc-akl-hvj
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1lv-ylv-8fq
title: Textulariella Cushman, 1927

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pfk-ayx-yyc
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/43l-aq0-vgy
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/710-386-1s1
title: †Nummulites Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t56-6xy-3ay
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4wp-nb6-gdh
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v2h-1re-p6r
title: Heterostegina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1f8-jb0-n05
title: †Assilina orientalis Douvillé, 1912

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6gh-rcl-kpk
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/40q-1ll-vya
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8y0-r8q-88d
title: †Spiroclypeus margaritatus (Schlumberger, 1902)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wpe-wb7-0b0
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4ed-esh-ngr
title: Cycloclypeus W.B. Carpenter, 1856

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s9k-0xl-tew
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j8c-jkf-ddl
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/daz-h89-734
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ykr-hnb-z9x
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j8c-yvv-ge5
title: Amphistegina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vnc-e26-bjj
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29314175
title: Daily maximum temperature

description: <b>The present datasets includes the mean daily maximum temperature (TX) in degrees Celsius. The analysis is conducted for the Abruzzo Region using Universal Kriging.</b><b>Further methodological details can be found in</b><b> </b><b><i>Building a high-resolution climate gridded dataset in complex terrain: validating different methods in the Abruzzo region in Italy</i></b><b> </b><b>by Argañaraz et al., 2025.</b>
DOI: 10.6084/m9.figshare.29314175.v1
title: Daily maximum temperature

description: <b>The present datasets includes the mean daily maximum temperature (TX) in degrees Celsius. The analysis is conducted for the Abruzzo Region using Universal Kriging.</b><b>Further methodological details can be found in</b><b> </b><b><i>Building a high-resolution climate gridded dataset in complex terrain: validating different methods in the Abruzzo region in Italy</i></b><b> </b><b>by Argañaraz et al., 2025.</b>
DOI: 10.5281/zenodo.15212509
title: FLOWR: Flow Matching for Structure-Aware De Novo, Interaction- and Fragment-Based Ligand Generation

description: We introduce FLOWR, a novel structure-based framework for the generation and optimization of three-dimensional ligands. FLOWR integrates continuous and categorical flow matching with equivariant optimal transport, enhanced by an efficient protein pocket conditioning. Alongside FLOWR, we present SPINDR, a thoroughly curated dataset comprising ligand-pocket co-crystal complexes specifically designed to address existing data quality issues. Empirical evaluations demonstrate that FLOWR surpasses current state-of-the-art diffusion- and flow-based methods in terms of PoseBusters-validity, pose accuracy, and interaction recovery, while offering a significant inference speedup, achieving up to 70-fold faster performance. In addition, we introduce FLOWR.multi, a highly accurate multi-purpose model allowing for the targeted sampling of novel ligands that adhere to predefined interaction profiles and chemical substructures for fragment-based design without the need of re-training or any re-sampling strategies
DOI: 10.5281/zenodo.15212510
title: FLOWR: Flow Matching for Structure-Aware De Novo, Interaction- and Fragment-Based Ligand Generation

description: We introduce FLOWR, a novel structure-based framework for the generation and optimization of three-dimensional ligands. FLOWR integrates continuous and categorical flow matching with equivariant optimal transport, enhanced by an efficient protein pocket conditioning. Alongside FLOWR, we present SPINDR, a thoroughly curated dataset comprising ligand-pocket co-crystal complexes specifically designed to address existing data quality issues. Empirical evaluations demonstrate that FLOWR surpasses current state-of-the-art diffusion- and flow-based methods in terms of PoseBusters-validity, pose accuracy, and interaction recovery, while offering a significant inference speedup, achieving up to 70-fold faster performance. In addition, we introduce FLOWR.multi, a highly accurate multi-purpose model allowing for the targeted sampling of novel ligands that adhere to predefined interaction profiles and chemical substructures for fragment-based design without the need of re-training or any re-sampling strategies
DOI: 10.5281/zenodo.15257565
title: FLOWR: Flow Matching for Structure-Aware De Novo, Interaction- and Fragment-Based Ligand Generation

description: We introduce FLOWR, a novel structure-based framework for the generation and optimization of three-dimensional ligands. FLOWR integrates continuous and categorical flow matching with equivariant optimal transport, enhanced by an efficient protein pocket conditioning. Alongside FLOWR, we present SPINDR, a thoroughly curated dataset comprising ligand-pocket co-crystal complexes specifically designed to address existing data quality issues. Empirical evaluations demonstrate that FLOWR surpasses current state-of-the-art diffusion- and flow-based methods in terms of PoseBusters-validity, pose accuracy, and interaction recovery, while offering a significant inference speedup, achieving up to 70-fold faster performance. In addition, we introduce FLOWR.multi, a highly accurate multi-purpose model allowing for the targeted sampling of novel ligands that adhere to predefined interaction profiles and chemical substructures for fragment-based design without the need of re-training or any re-sampling strategies
DOI: 10.3886/e193366
title: Data and Code for: Uncharted Waters: Effects of Maritime Emission Regulation

description: Data and code for replication of the article "Uncharted Waters: Effects of Maritime Emission Regulation"<br><br>Abstract: Maritime shipping emits as much fine particulate matter as half of global road traffic. We are the first to measure the consequences of US maritime emissions standards on air quality, human health, racial exposure disparities, and behavior. The introduction of US maritime emissions control areas significantly decreased fine particulate matter, low birth weight, and infant mortality. Yet, only about half of the forecasted fine particulate matter abatement was achieved by the policy. We show evidence consistent with behavioral responses among ship operators, other polluters, and individuals that muted the policy's impact, but were not incorporated in ex-ante models.
DOI: 10.3886/e193366v1
title: Data and Code for: Uncharted Waters: Effects of Maritime Emission Regulation

description: Data and code for replication of the article "Uncharted Waters: Effects of Maritime Emission Regulation"<br><br>Abstract: Maritime shipping emits as much fine particulate matter as half of global road traffic. We are the first to measure the consequences of US maritime emissions standards on air quality, human health, racial exposure disparities, and behavior. The introduction of US maritime emissions control areas significantly decreased fine particulate matter, low birth weight, and infant mortality. Yet, only about half of the forecasted fine particulate matter abatement was achieved by the policy. We show evidence consistent with behavioral responses among ship operators, other polluters, and individuals that muted the policy's impact, but were not incorporated in ex-ante models.
DOI: 10.26036/cnp0006367
title: dnbc4tools

description: DNBelab C Series Single-Cell Analysis Workflow Suite
DOI: 10.15468/dl.yr3ctv
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Festuca arundinacea"
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020759-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f6sj5q
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euprepiophis mandarinus",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 87 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020760-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cypfm7
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Coleus amboinicus",
 "Country is Jamaica",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020763-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13131706
title: D–MOPH–25: Diverse MOF–molecule Pairs for Henry's Constants Prediction
DOI: 10.5281/zenodo.16754752
title: D–MOPH–25: Diverse MOF–molecule Pairs for Henry's Constants Prediction
DOI: 10.15468/dl.mefug2
title: Occurrence Download

description: A dataset containing 1277 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phylloscopus olivaceus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 1277 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020762-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ce8vrr
title: Occurrence Download

description: A dataset containing 5302 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phylloscopus montis)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 5302 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020761-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15059352
title: Deep root loss and regeneration in the Anthropocene drive continental-scale changes in deep soil structure

description: Root abundance, soil structure, and quadratic/linear model data with associated scripts of analysis.
DOI: 10.5281/zenodo.16730359
title: Deep root loss and regeneration in the Anthropocene drive continental-scale changes in deep soil structure

description: Root abundance, soil structure, and quadratic/linear model data with associated scripts of analysis.
DOI: 10.5281/zenodo.16748473
title: Transient Holocene climate simulation data forced with different land-use reconstructions

description: Summary

Transient non-accelerated coupled climate model simulations covering the past 10,000 years testing different reconstructions of land-use.

 

Format

NetCDF format on the HadCM3 model grid (3.75 x 2.5 degrees longitude x latitude).

 

Variables

lu - land-use fraction prescribed in each gridcell at a 500 year timestep from 9750 to 250 years before CE 1950.

temp_mm_1_5m - simulated surface air temperature for years 1 to 10,000 of the simulations which cover the period from 10,000 to 0 years before CE 1950.

 

Climate Model

HadCM3B-M2.1d (Valdes et al. 2017, doi: 10.5194/gmd-10-3715-2017) with modifications to atmospheric convection and vegetation moisture stress as described in Hopcroft & Valdes, (2021, doi: 10.1073/pnas.2108783118).

 

Transient Holocene Forcing

Forced with orbit, greenhouse gases, sea-level (coastline, topography, salinity), solar irradiance and land-use (as listed below).

 

Land-use scenarios

noLU - constant with no land-use anywhere.

KK10 - Kaplan et al (2009, doi: 10.1016/j.quascirev.2009.09.028) and Kaplan et al. (2011, doi: 10.1177/0959683610386983).

HYDE v3.2 - Goldewijk et al (2017, doi: 10.5194/essd-9-927-2017).

HYDE v3.3 - this work.

REVEALS - this work, only covers Europe, North America and China.

 

Publication

P.O. Hopcroft, B. Pirzamanbein, K.K. Goldewijk, J. Lindstrom, A. Dawson, J.O. Kaplan, F. Li & M.J. Gaillard.

Surface temperature response to Holocene land use scenarios, in prep.

 

Contact

Peter Hopcroft (University of Birmingham): p.hopcroft@bham.ac.uk.
DOI: 10.5281/zenodo.16748474
title: Transient Holocene climate simulation data forced with different land-use reconstructions

description: Summary

Transient non-accelerated coupled climate model simulations covering the past 10,000 years testing different reconstructions of land-use.

 

Format

NetCDF format on the HadCM3 model grid (3.75 x 2.5 degrees longitude x latitude).

 

Variables

lu - land-use fraction prescribed in each gridcell at a 500 year timestep from 9750 to 250 years before CE 1950.

temp_mm_1_5m - simulated surface air temperature for years 1 to 10,000 of the simulations which cover the period from 10,000 to 0 years before CE 1950.

 

Climate Model

HadCM3B-M2.1d (Valdes et al. 2017, doi: 10.5194/gmd-10-3715-2017) with modifications to atmospheric convection and vegetation moisture stress as described in Hopcroft & Valdes, (2021, doi: 10.1073/pnas.2108783118).

 

Transient Holocene Forcing

Forced with orbit, greenhouse gases, sea-level (coastline, topography, salinity), solar irradiance and land-use (as listed below).

 

Land-use scenarios

noLU - constant with no land-use anywhere.

KK10 - Kaplan et al (2009, doi: 10.1016/j.quascirev.2009.09.028) and Kaplan et al. (2011, doi: 10.1177/0959683610386983).

HYDE v3.2 - Goldewijk et al (2017, doi: 10.5194/essd-9-927-2017).

HYDE v3.3 - this work.

REVEALS - this work, only covers Europe, North America and China.

 

Publication

P.O. Hopcroft, B. Pirzamanbein, K.K. Goldewijk, J. Lindstrom, A. Dawson, J.O. Kaplan, F. Li & M.J. Gaillard.

Surface temperature response to Holocene land use scenarios, in prep.

 

Contact

Peter Hopcroft (University of Birmingham): p.hopcroft@bham.ac.uk.
DOI: 10.15468/dl.mk8k8c
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Coleus amboinicus",
 "Country is Marshall Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020764-250802193616735/datasets/export for details.
DOI: 10.15468/dl.kznzvc
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Homodiaetus passarellii)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020765-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3duueb
title: Occurrence Download

description: A dataset containing 332 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Python regius)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 332 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020768-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.