cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ntufdn
title: Occurrence Download

description: A dataset containing 216 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eriosyce strausiana"
 ]
}

 The dataset includes 216 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005811-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jb3rxp
title: Occurrence Download

description: A dataset containing 2024 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Crepis sancta sancta, Pterotheca griselica, Barkhausia roylei, Crepis kochii, Crepinia marschalliana, Pterotheca nudicaulis, Pterotheca taurica, Crepis roylei, Trichocrepis nemausensis, Crepis nuda, Crepis bursifolia, Pterotheca nemausensis aptera, Crepis sancta, Hieracium nemausense, Hieracium gmelinii, Pterotheca aralensis, Lagoseris caspica, Pterotheca nemausensis alata, Andryala nemausensis, Andryala nudicaulis, Lagoseris sancta, Hieracium sanctum, Crepis bursifolia, Crepis kochiana, Lagoseris sancta nemausensis, Lagoseris nemausensis, Pterotheca nemausensis, Trichocrepis bifida, Hieracium gmelinii, Pterotheca nemausensis, Intybellia rosea, Trichoseris rueppellii, Crepis nemausensis, Lagoseris purpurea, Lagoseris nemausensis, Crepis multicaulis, Crepis sancta azerbaijanica, Pterotheca ruppellii, Lagoseris alata, Lagoseris taurica, Intybellia taurica, Crepis roylei, Intybellia purpurea, Myoseris purpurea, Lagoseris marschalliana, Pterotheca marschalliana, Lagoseris aralensis, Pterotheca caspica, Hieracioides purpureum, Lagoseris purpurea, Pterotheca purpurea, Lagoseris sancta nemausensis, Pterotheca sancta, Lagoseris sancta, Hieracioides kochianum, Crepis sancta nemausensis, Crepis sancta bifida, Lagoseris bifida, Crepis bifida, Pterotheca nemausensis bifida, Pterotheca bifida, Lagoseris sancta bifida, Pterotheca bifida, Pterotheca nemausensis bifida, Lagoseris sancta bifida)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 2024 records from 133 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005813-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uu3uby
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prosopis juliflora",
 "Country is Myanmar",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005815-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15976820
title: Material library - Infrared and Hyperspectral dataset

description: This data article aims to characterize different CDWs materials (sample details are provided in the attached .xlsx file) using different methodologies, including hyperspectral (HSI) and infrared (IR) imaging techniques. The goal is to identify the characteristics of each material in different spectral regions, providing valuable information to the scientific community, that could be exploited also with a perspective of enhancing the valorisation and the circularity of such materials. These characteristics are the material emissivity and the spectral signature for infrared and hyper-spectral analysis respectively.
DOI: 10.5281/zenodo.15976821
title: Material library - Infrared and Hyperspectral dataset

description: This data article aims to characterize different CDWs materials (sample details are provided in the attached .xlsx file) using different methodologies, including hyperspectral (HSI) and infrared (IR) imaging techniques. The goal is to identify the characteristics of each material in different spectral regions, providing valuable information to the scientific community, that could be exploited also with a perspective of enhancing the valorisation and the circularity of such materials. These characteristics are the material emissivity and the spectral signature for infrared and hyper-spectral analysis respectively.
DOI: 10.15468/dl.b4bf9e
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zinnia elegans",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 59 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005816-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7brneg
title: Occurrence Download

description: A dataset containing 13323 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sedum sarmentosum"
 ]
}

 The dataset includes 13323 records from 308 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005812-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16001914
title: Simulation of model mitochondrial membrane (CHARMM36)

description: MD simulation trajectories of model internal mitochondrial membrane (IMM) consisted of 45% PC (18:0, 20:4),SAPC, 35% PE (16:0, 18:1), POPE, and 20% CL (18:2), TLCL conducted in NPT ensemble at 310K in CHARMM36 force field using GROMACS v.2023+. Pre-equilibration trajectory of 1000 ns was taken as initial states (from timesteps 300, 700, 1000 ns) for three deposited 1-us replicas.

Writting frequency is 20 ps.

Part of the bachelor project "Kardiolipin sin effekt på membranfluiditet" (in Norwegian) of Olivia Lykke Nygaard uploaded and referenced below.
DOI: 10.5281/zenodo.16001915
title: Simulation of model mitochondrial membrane (CHARMM36)

description: MD simulation trajectories of model internal mitochondrial membrane (IMM) consisted of 45% PC (18:0, 20:4),SAPC, 35% PE (16:0, 18:1), POPE, and 20% CL (18:2), TLCL conducted in NPT ensemble at 310K in CHARMM36 force field using GROMACS v.2023+. Pre-equilibration trajectory of 1000 ns was taken as initial states (from timesteps 300, 700, 1000 ns) for three deposited 1-us replicas.

Writting frequency is 20 ps.

Part of the bachelor project "Kardiolipin sin effekt på membranfluiditet" (in Norwegian) of Olivia Lykke Nygaard uploaded and referenced below.
DOI: 10.3535/4f7-hxk-2w6
title: Dicotyledoneae DC.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.hdbgvm
title: Occurrence Download

description: A dataset containing 2737 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euphorbia virgata",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2737 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005819-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xq2whq
title: Occurrence Download

description: A dataset containing 242 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Quercus brantii"
 ]
}

 The dataset includes 242 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005820-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pqjcz4
title: Occurrence Download

description: A dataset containing 14829 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euphorbia virgata",
 "Country is Russian Federation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14829 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005818-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.757y95
title: Occurrence Download

description: A dataset containing 10133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((131.01603 42.5042,131.36594 42.5042,131.36594 42.75892,131.01603 42.75892,131.01603 42.5042))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Coordinate rounded, Geodetic datum assumed WGS84, Coordinate reprojected, Country derived from coordinates, Coordinate uncertainty meters invalid, Continent coordinate mismatch, Recorded date mismatch, Recorded date invalid, Taxon match fuzzy, Taxon match higher rank, The scientific name ID was not found in the checklist, The taxon concept ID was not found in the checklist, The taxon ID was not found in the checklist, Taxon match none, Elevation non numeric, Modified date invalid, Identified date invalid, Basis of record invalid, Individual count invalid, Occurrence status inferred from individual count, Ambiguous institution, Ambiguous collection, Institution match none, Collection match none, Institution match fuzzy, Collection match fuzzy, Institution collection mismatch, Multimedia URI invalid)",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (28eb1a3f-1c15-4a95-931a-4af90ecb574d, 1158c872-239b-4d40-bfc5-53138cdf4f37, f5fc4e61-b7a0-414b-ab68-b41cb23e7fdc, e2e717bf-551a-4917-bdc9-4fa0f342c530, 32859580-c30c-4367-8a8a-71f00fc9f833, c49fdf8d-5648-4ae7-b0be-d3d9c67bc755, c76cf030-2a95-11da-9cc1-b8a03c50a862, 90fd6680-349f-11d8-aa2d-b8a03c50a862, 04fd2e13-6881-4e5c-9dd1-8fdd9ab993c1, cc483d69-50e9-4463-8eb6-41fc459fa485)"
 ]
}

 The dataset includes 10133 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005821-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4prr9g
title: Occurrence Download

description: A dataset containing 671 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pyrrocoma crocea"
 ]
}

 The dataset includes 671 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005822-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29596949
title: 20250718.1311.pdf

description: Heat is defined as electricity.
DOI: 10.6084/m9.figshare.29596949.v1
title: 20250718.1311.pdf

description: Heat is defined as electricity.
DOI: 10.15468/dl.88ffwk
title: Occurrence Download

description: A dataset containing 23711 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Panicum capillare, Panicum capillare brevifolium, Panicum capillare agreste, Panicum barbipulvinatum, Panicum acutifolium, Panicum acutifolium, Panicum riparium, Panicum barbipulvinatum, Panicum capillare, Panicum bobartii, Panicum capillare, Panicum elegantulum, Panicum capillare occidentale, Panicum capillare brevifolium, Panicum barbipulvinatum hirsutipes, Millium capillare, Panicum capillare capillare, Leptoloma capillaris, Chasea capillaris, Milium capillare, Panicum capillare vulgaris, Panicum capillare vulgare, Panicum capillare barbipulvinatum, Leptoloma barbipulvinata, Panicum capillare barbipulvinatum, Milium barbipulvinatum, Panicum capillare brevifolium)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 23711 records from 584 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005823-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ygxuxx
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prosopis juliflora",
 "Country is Oman",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005826-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5d78rp
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zinnia elegans",
 "Country is Romania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 15 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005825-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d7akw2
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prosopis juliflora",
 "Country is Nigeria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005824-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sgxaed
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zinnia elegans",
 "Country is Seychelles",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005827-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7p8mag
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Draba longisiliqua"
 ]
}

 The dataset includes 33 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005830-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xen5nd
title: Occurrence Download

description: A dataset containing 513 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malva verticillata",
 "Country is Russian Federation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 513 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005833-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8saykf
title: Occurrence Download

description: A dataset containing 8796 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "TaxonKey is Melanargia galathea"
 ]
}

 The dataset includes 8796 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005831-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.97g8uv
title: Occurrence Download

description: A dataset containing 6222 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Callitriche antarctica, Austroblechnum penna-marina, Crassula moschata, Ranunculus biternatus, Acaena magellanica, Lycopodium magellanicum, Azorella selago)",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-179.2 -73.3,180 -73.3,180 -43.7,-179.2 -43.7,-179.2 -73.3))",
 "Year is greater than or equal to 1800"
 ]
}

 The dataset includes 6222 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004081-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4xghjr
title: Occurrence Download

description: A dataset containing 649 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-10.1568 35.43086,3.89269 35.43086,3.89269 43.97118,-10.1568 43.97118,-10.1568 35.43086))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Launaea lanifera"
 ]
}

 The dataset includes 649 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004083-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mrfmqy
title: Occurrence Download

description: A dataset containing 20043 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mnemiopsis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 20043 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004082-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29605421
title: Apoptotic bodies derived from human umbilical cord mesenchymal stem cells improve recovery from myocardial infarction in swine

description: Apoptotic bodies (ABs) are a type of extracellular vesicles (EVs) that could contribute to the paracrine effect of stem cells. However, their potential in treating cardiovascular diseases is largely unexplored. This study investigated the therapeutic effects of ABs derived from human umbilical cord mesenchymal stem cells (MSCs) on cardiac recovery in a porcine model of myocardial infarction (MI). In vitro, ABs reduced apoptosis and cytotoxicity in cardiomyocytes under oxygen and glucose deprivation (OGD) conditions and enhanced the capacity of migration and tube formation in endothelial cells. In vivo, akin to MSCs, administration of ABs improved contractile function, reduced infarct size, and mitigated adverse remodeling in pig hearts with MI, concomitantly with increased cardiomyocyte survival and angiogenesis. These cardioprotective effects were mediated through the regulation of autophagy by activating the adenosine monophosphate – activated protein kinase (AMPK) and transcription factor EB (TFEB) signaling pathways. microRNAs contained in ABs were sequenced, revealing that let-7f-5p was the most abundant. let-7f-5p promoted AMPK phosphorylation by targeting protein phosphatase 2 regulatory subunit B alpha (PPP2R2A) and decreased TFEB phosphorylation by targeting MAP4K3 to regulate autophagy, thereby contributing to the effects of ABs. Overall, these findings indicate that MSC-derived ABs have the potential to be a promising and effective acellular therapeutic option for treating MI.
DOI: 10.6084/m9.figshare.29605421.v1
title: Apoptotic bodies derived from human umbilical cord mesenchymal stem cells improve recovery from myocardial infarction in swine

description: Apoptotic bodies (ABs) are a type of extracellular vesicles (EVs) that could contribute to the paracrine effect of stem cells. However, their potential in treating cardiovascular diseases is largely unexplored. This study investigated the therapeutic effects of ABs derived from human umbilical cord mesenchymal stem cells (MSCs) on cardiac recovery in a porcine model of myocardial infarction (MI). In vitro, ABs reduced apoptosis and cytotoxicity in cardiomyocytes under oxygen and glucose deprivation (OGD) conditions and enhanced the capacity of migration and tube formation in endothelial cells. In vivo, akin to MSCs, administration of ABs improved contractile function, reduced infarct size, and mitigated adverse remodeling in pig hearts with MI, concomitantly with increased cardiomyocyte survival and angiogenesis. These cardioprotective effects were mediated through the regulation of autophagy by activating the adenosine monophosphate – activated protein kinase (AMPK) and transcription factor EB (TFEB) signaling pathways. microRNAs contained in ABs were sequenced, revealing that let-7f-5p was the most abundant. let-7f-5p promoted AMPK phosphorylation by targeting protein phosphatase 2 regulatory subunit B alpha (PPP2R2A) and decreased TFEB phosphorylation by targeting MAP4K3 to regulate autophagy, thereby contributing to the effects of ABs. Overall, these findings indicate that MSC-derived ABs have the potential to be a promising and effective acellular therapeutic option for treating MI.
DOI: 10.6084/m9.figshare.30042047
title: Reconstitution of autophagic-like membrane tethering reveals that Atg11 can bind and cluster vesicles on cargo mimetics

description: Macroautophagy (hereafter, autophagy) is essential for the degradation of mitochondria from yeast to humans. Mitochondrial autophagy in yeast is initiated when the selective autophagy scaffolding protein Atg11 is recruited to mitochondria through its interaction with the selective autophagy receptor Atg32. This also results in the recruitment of small 30-nm vesicles that fuse to generate the initial phagophore membrane. We demonstrate that Atg11 can bind to autophagic-like membranes in vitro in a curvature-dependent manner in part via a predicted amphipathic helix. Deletion of the amphipathic helix from Atg11 results in a delay in the formation of mitophagy initiation sites in yeast. Furthermore, using a novel biochemical approach, we demonstrate that the interaction between Atg11 and Atg32 results in the tethering of autophagic-like vesicles in clusters to giant unilamellar vesicles containing a lipid composition designed to mimic the outer mitochondrial membrane. We also demonstrate that the N-terminal region of Atg11 is an important mediator of vesicle tethering to cargo mimetics and that clustering of autophagic-like vesicles requires the C-terminal region of Atg11. Taken together, our results reveal that Atg11 clusters into high-order oligomers, can tether autophagic-like membranes and due to its ability to oligomerize can cluster vesicles on the surface of cargo mimetics. This work provides new insight into the mechanisms of protein and membrane clustering by Atg11. Given the increasing importance of protein oligomerization and clustering in autophagy, these results have important implications in the initiation of mitochondrial autophagy. <b>Abbreviations</b> Atg11: autophagy related 11; Atg11-Cterm: C-terminal region of Atg11; Atg11-Nterm: N-terminal region of Atg11; Atg32: autophagy related 32; COV: coefficient of variance; DOPC: 1,2-dioleoyl-sn-glycero-3-phosphocholine; DOPE: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine; DOPS: 1,2-dioleoyl-sn-glycero-3-phospho-L-serine; FRAP: fluorescence recovery after photobleaching; GLT: GUV and liposome tethering; GUV: giant unilamellar vesicle; MKO: multiple knockout; OMM: outer mitochondrial membrane; PC: phosphatidylcholine; PE: phosphatidylethanolamine; PtdIns: phosphatidylinositol; PtdIns3P: phosphatidylinositol-3-phosphate; RhPE: rhodamine phosphatidylethanolamine; SAR: selective autophagy receptor; SEC: size-exclusion chromatography; SLB: supported lipid bilayers; SMrT: supported membrane templates; YPL: yeast polar lipids