cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.812p16c/1
title: Hargreaves etal 2019 SAJB kraussii R for Dryad

description: R code for all analyses and creation of Figure 2. Full explanations of all column headings are given in the code.
DOI: 10.5061/dryad.812p16c/2
title: kraussii aviary flower widths

description: Measurements of flower entrance width after each experimental trial (to ensure experimental widening lasted throughout the trial; Fig 2a). Additional information included about the number of anthers open (male plants) and stigma state (female plants) that was not used in analyses.
DOI: 10.5061/dryad.9nq5c8d/1
title: 1_Code_VOI

description: Matlab code to replicate analysis from article: "General rules for environmental management to prioritise social-ecological systems research based on a value of information approach." 1_Code_VOI generates a series of MATLAB Data files, which are aggregated in 2_Code_EVPXI to calculate EVPXI for each system. 2_Code_EVPXI generates 4 csv files which are combined to reproduce Figure 4 from the manuscript in 3_Code_Figure.
DOI: 10.5061/dryad.9nq5c8d/2
title: 2_Code_EVPXI

description: Matlab code to replicate analysis from article: "General rules for environmental management to prioritise social-ecological systems research based on a value of information approach." 1_Code_VOI generates a series of MATLAB Data files, which are aggregated in 2_Code_EVPXI to calculate EVPXI for each system. 2_Code_EVPXI generates 4 csv files which are combined to reproduce Figure 4 from the manuscript in 3_Code_Figure.
DOI: 10.5061/dryad.9nq5c8d/3
title: 3_Code_Figure

description: R code to replicate analysis from article: "General rules for environmental management to prioritise social-ecological systems research based on a value of information approach." 1_Code_VOI generates a series of MATLAB Data files, which are aggregated in 2_Code_EVPXI to calculate EVPXI for each system. 2_Code_EVPXI generates 4 csv files which are combined to reproduce Figure 4 from the manuscript in 3_Code_Figure.
DOI: 10.5061/dryad.c0282c8/2
title: Neutral microsatellite genotypes

description: This data file contains genotypes for nine neutral microsatellite markers that were genotyped in 105 coyotes (Canis latrans) sampled in New York, New Jersey, and Connecticut. Metadata includes sample identification number and urbanization subgroup. The two subgroups include coyotes sampled within New York City (NYC) and outside of NYC (non-NYC). Please see the map provided in Figure 1 to better visualize sampling locations. Missing genotype data is indicated with zeros.
DOI: 10.5061/dryad.c670tq2/1
title: PROFIL_DATA

description: The data in plain text format with variables names as header
2306 observations on 50 variables
DOI: 10.5061/dryad.c670tq2/2
title: model_1

description: Final model
DOI: 10.5061/dryad.c670tq2/3
title: model_3

description: Final model with informative priors for the effect of sildenafil
DOI: 10.5061/dryad.cr65269/1
title: Table_S1

description: Table S1 Genotypes of Bradyrhizobium isolates
DOI: 10.5061/dryad.cr65269/2
title: Table_S2

description: Table S2 Table of all isolates included in analyses and associated accession numbers.
DOI: 10.5061/dryad.cr65269/3
title: Table_S3

description: Table S3 Acmispon hosts and inoculation treatments
DOI: 10.5061/dryad.ff18q9d/14
title: Appendix S9 - Dated trees with GTS

description: Appendix S9. Bayesian dated trees of Papilionoidea inferred with the 760-gene dataset and the mixture model CAT-GTR (PhyloBayes).
DOI: 10.5061/dryad.ff18q9d/15
title: Appendix S10 - Chronogram files

description: Appendix S10. Tree files of molecular divergence-time estimation of Papilionoidea as inferred with the PhyloBayes CAT-GTR model following four different analyses of the 760-gene dataset.
DOI: 10.5061/dryad.ff18q9d/16
title: Appendix S11 - Prior and posterior distributions

description: Appendix S11. Comparison of prior and posterior distributions for nodes with set fossil calibrations. Bayesian posterior distributions are not driven by the uniform prior distributions used to calibrate the five nodes with fossil calibrations.
DOI: 10.5061/dryad.ff18q9d/17
title: Appendix S12 - Phylogenomic tree with cross-contam

description: Appendix S12. Phylogenomic tree of Papilionoidea inferred with the Bayesian mixture model using an amino-acid dataset comprised of 2,993 orthologous genes selected without the cross-contamination check.
DOI: 10.5061/dryad.ff18q9d/18
title: Appendix S13 - Correlation cross-conta vs. no cross-conta

description: Appendix S13. Correlations of branch lengths as inferred with the 2,993-gene (without CroCo) versus the 6,621-gene (with CroCo) datasets (a), and as inferred with the 760-gene versus the 6,621-gene datasets (both with CroCo) (b). Units are the number of substitutions per site per branch. Note the higher correlation (R2) obtained when comparing branch lengths between the 760-gene and 6,621-gene datasets with cross-contamination excluded.
DOI: 10.5061/dryad.ff18q9d/7
title: Appendix S7 - tree files

description: Tree files of the molecular phylogenomic analyses of Papilionoidea as inferred with IQ-TREE and PhyloBayes.
DOI: 10.5061/dryad.jh3m624/1
title: RTI files of Zygoptera wings

description: Thank you for downloading this package. It contains three RTI files. They can be read thanks to the RTIViewer software currently available at http://culturalheritageimaging.org/What_We_Offer/Downloads/View/index.html. 
DimeragrionFW.rti
Right fore-wing in dorsal view of a male Dimeragrion percubitale Calvert, 1913 from Rosser W. Garrison Collection.
DimeragrionHW.rti
Right hindwing in dorsal view of a male Dimeragrion percubitale Calvert, 1913 from Rosser W. Garrison Collection.
HeliocharisFW.rti
Right fore-wing in dorsal view of a male Heliocharis amazona Selys, 1853 1913 from Rosser W. Garrison Collection.
HeliocharisHW.rti
Right hindwing in dorsal view of a male Heliocharis amazona Selys, 1853 1913 from Rosser W. Garrison Collection.
PolythoreFW.rti
Left fore-wing in ventral view of a male Polythore derivata (McLachlan, 1881) from Rosser W. Garrison Collection.
PolythoreHW.rti
Left hindwing in ventral view of a male Polythore derivata (McLachlan, 1881) from Rosser W. Garrison Collection.
DOI: 10.5061/dryad.rr18v66/1
title: The supplement files of this study.
DOI: 10.5061/dryad.sr182r0.1
title: Data from: Virulence-driven trade-offs in disease transmission: a meta-analysis
DOI: 10.5061/dryad.sr182r0.1/1.1
title: replication_transmission_extracted_data

description: Raw data extracted from studies that met our inclusion criteria for the replication--transmission relationship.
DOI: 10.5061/dryad.sr182r0.1/2.1
title: replication_transmission_studies_info

description: Information on studies that met our inclusion criteria for the replication--transmission relationship.
DOI: 10.5061/dryad.sr182r0.1/3.1
title: replication_virulence_extracted_data

description: Raw data from studies that met our inclusion criteria for the replication--virulence relationship.
DOI: 10.5061/dryad.sr182r0.1/4.1
title: replication_virulence_studies_info

description: Information on studies that met our inclusion criteria for the replication--virulence relationship.
DOI: 10.5061/dryad.sr182r0.1/5.1
title: virulence_transmission_extracted_data

description: Raw data extracted from studies that met our inclusion criteria for the virulence--transmission relationship.
DOI: 10.5061/dryad.sr182r0.2/4.2
title: replication_virulence_studies_info

description: Information on studies that met our inclusion criteria for the replication--virulence relationship.
DOI: 10.5061/dryad.sr182r0.2/5.2
title: virulence_transmission_extracted_data

description: Raw data extracted from studies that met our inclusion criteria for the virulence--transmission relationship.
DOI: 10.5061/dryad.sr182r0.2/6.2
title: virulence_transmission_studies_info

description: Information on studies that met our inclusion criteria for the virulence--transmission relationships
DOI: 10.17632/3fth4cdmz7.1
title: Data for: Ways of the green tourist in Europe

description: Data for this analysis originate from the Flash Eurobarometer 432 “Preferences of Europeans towards Tourism, January 2016” (http://data.europa.eu/euodp/en/data/dataset/S2065_432_ENG) with information on travel patterns of European citizens. The dataset includes information on actual (outbound) travel by destination in 2015, accompanied by a wide range of socio-demographic and contextual factors. The survey includes individuals aged 15 years and older in the 28 European Union Member States, as well as in the Former Yugoslav Republic of Macedonia, Iceland, Turkey, Montenegro and Moldavia. In addition, there is information on actual holiday trips with at least one overnight stay and the motivation behind the choice of them. There are 30,000 observations in the dataset, among which 19,833 relate to individuals who undertook a holiday trip in 2015.
DOI: 10.17632/7jg3y4mgyg.1
title: p300 mediated the histone acetylation of ORMDL3 to affect asthma development

description: Data for this research
DOI: 10.17632/b7cwddkcjm.3
title: Multispectral Images of Adulterated Turmeric Powder [Calibration Data]

description: This Dataset Consists of multispectral images of adulterated turmeric.
DOI: 10.17632/b7ncpn3tn7.1
title: Data for: Surface initiation of rolling contact fatigue at asperities considering slip, shear limit and thermal elastohydrodynamic lubrication

description: Data from a single asperity passing through a thermal elastohydrodynamic, TEHL, contact. The aim of the simulations is to clarify the loading conditions of asperities passing through thermal elastohydrodynamic lubricated contacts. The Figs 10 to 14 in C.-M. Everitts and B. Alfredssons article ‘Surface initiation of rolling contact fatigue at asperities considering slip, shear limit and thermal elastohydrodynamic lubrication’ was derived from the uploaded data. The numerical method used to obtain the data along with all input parameters used is presented in that article. The uploaded dataset contains two zip files containing data from one simulation each. The loading conditions were the same for both simulations except for the speed of the surfaces. In the first file, the speed of the surface with the asperity was 8 m/s while in the second zip file the speed of the asperity surface was 9 m/s. Note that the mean entrainment speed was 8.5 m/s in both simulations yielding different slip conditions for the two data sets. Each zip file contains the data from one TEHL-simulation divided into four separate results files. One data file contains the pressure, one the film thickness, one the temperature of the lubricant and the last the temperature of the metal body with the asperity. Each file contains the data from 3 steps where the grid size was gradually refined, then 10 steps when the time dependence was gradually introduced. Thereafter it is 514 time steps containing the information of the loading of the asperity as it passed through the TEHL contacts. Included in the folder is also a Matlab script reading and visualizing the data. The structure of the files is that the data from each simulation step is added after each other. For the pressure, the film thickness and the temperature of the lubricant each row represent the transverse direction and each column represents the rolling direction. The first row of each step contains the location of the nodes in the transverse direction and the first column contains the data of the nodes in the rolling direction. The structure of the metal temperature is such that each step contains the temperature of 39 layers. For each layer, the structure is the same as for the files mentioned before, with the rows representing the transverse direction and the columns the rolling direction, and the first row and column containing information about the node positions. For the spacing in the vertical direction, the reader is referred to the article ‘Surface initiation of rolling contact fatigue at asperities considering slip, shear limit and thermal elastohydrodynamic lubrication’ by C.-M. Everitt and B. Alfredsson.
DOI: 10.5061/dryad.1740n0h/6
title: Supplemental Table 1

description: Table S1. Taxon, voucher, and locality information for all samples included in the sequence-capture experiment
DOI: 10.5061/dryad.1740n0h/7
title: Supplemental Table 2

description: Table S2. A summary of the occurrence of monochromatism and sexual dichromatism in Afrobatrachian species based on literature, museum specimens, and collective field observations. For color score, 0 indicates monochromatism and 1 indicates sexual dichromatism.
DOI: 10.5061/dryad.269126c/2
title: loblolly_pine_exome_SNPs_2.8million.vcf.gz

description: Genotypic data were obtained by the authors for 375 loblolly pine trees. The NimbleGen SeqCap EZ system (Roche NimbleGen, Inc., Madison, WI) was used to capture and enrich the exome of each tree. The detailed procedures of probe design, raw SNP detection and genotyping are described in Lu et al. (2016). In this study, the raw SNPs were filtered, accepting only bi-allelic sites with at least 5Χ sequencing depth for all of the individuals without missing data and a minor allele frequency (MAF) ≥ 0.01. A total of 2,822,609 SNPs were retained.
DOI: 10.5061/dryad.287f2n0/1
title: DegMoB15, normalized

description: Normalized Differentiation- Proportion of time (months) below 15 C.
DOI: 10.5061/dryad.287f2n0/2
title: Differentiation_Fst, normalized

description: Normalized Differentiation - Fst
DOI: 10.5061/dryad.287f2n0/3
title: Differentiation_Jost, normalized

description: Normalized Differentiation - Jost's D
DOI: 10.5061/dryad.287f2n0/4
title: Euclidean Distance, Normalized

description: Normalized Differentiation - Euclidean Distance
DOI: 10.5061/dryad.287f2n0/5
title: Genetic Diversity, normalized

description: Normalized Differentiation- Genetic Diversity (Heterozygosity from Hickory)
DOI: 10.5061/dryad.287f2n0/6
title: Distance Over Land, normalized

description: Normalized Differentiation - Distance over land (in meters)
DOI: 10.5061/dryad.287f2n0/7
title: Thermal_PC1, normalized

description: Normalized Differentiation - Thermal_PC1
DOI: 10.5061/dryad.287f2n0/8
title: Pst Plasticity, normalized

description: Normalized Differentiation - Pst of floral reflectance plasticity
DOI: 10.5061/dryad.308hs50/1
title: Raw data

description: Raw data of Myxococcus xanthus fruiting bodies phenotypic traits
DOI: 10.5061/dryad.34n4t78/1
title: Herbarium stigma sample pollen counts

description: Pollen counts and identifications for each stigma sampled from an herbarium sheet from the Herbarium Pacificum (BISH) collection used in this publication.
DOI: 10.5061/dryad.34n4t78/2
title: Pollen reference collection images

description: Images of pollen morphospecies encountered during course of study. Most pollen species were identified and confirmed based on anther collections from the field, while other morphospecies were encountered on stigmas and identification attempts were made based on Selling 1947. See the accompanying uploaded excel document in this data package for proposed species identification, when available, for unknown morphospecies. All images are taken of acetoylized pollen grains at 400x magnification, using a compound light microscope, as described in the associated paper (Johnson et al. 2019).
DOI: 10.5061/dryad.34n4t78/3
title: Code_forPaperFigures

description: R code to recreate Figure 2 and 3 in this paper, and conduct underlying analyses. Relies on the Herbarium stigma sample pollen counts.xlsx data file.
DOI: 10.5061/dryad.3kf3gg2/11
title: Supplementary File 3_Mean_test

description: MATLAB code
DOI: 10.5061/dryad.49c3jd7/1
title: Soil Data

description: Physical and chemical analysis of soil
DOI: 10.5061/dryad.49c3jd7/2
title: Zeolite Data

description: (1)Characterization analyses of zeolite before and after modification; (2)Equilibrium adsorption experiment
DOI: 10.5061/dryad.49c3jd7/3
title: Contrast Experiments Data

description: The contrast experiments data
DOI: 10.5061/dryad.49c3jd7/4
title: Multifactor Experiments Data

description: The multifactor experiments data
DOI: 10.5061/dryad.49c3jd7/5
title: Optimal combination and Cr form Data

description: The optimal combination experiment and Cr form data
DOI: 10.5061/dryad.67st708/1
title: Data for ciprofloxacin prophylaxis as meningitis outbreak response modeling study

description: There are three separate .csv files. The first contains information relative to the villages of the study area. The second contains information relative to the households of meningitis cases. The third contains information relative to the individual meningitis cases.
DOI: 10.5061/dryad.68q4hf7/1
title: data_and_code

description: Matlab code to plot phase planes and solutions, and to carry out parameter fitting. Excel sheets with experimental results and concentration calculations.
DOI: 10.5061/dryad.69b648j/1
title: Supp Figure 1_19.05.13

description: Supplemental figure and table associated with Genomic and transcriptomic characterization of papillary microcarcinomas with lateral neck lymph node metastases, published in JCEM 2019
DOI: 10.5061/dryad.69b648j/2
title: Supplementary Table 1_19.05.13

description: Supplementary table to Genomic and transcriptomic characterization of papillary microcarcinomas with lateral neck lymph node metastases, published in JCEM 2019
DOI: 10.5061/dryad.7vp288f/2
title: All Dives by Tuna #1

description: This file includes all dives from the fish tagged with the CEFAS G6a tag that did not include a speed sensor.
DOI: 10.5061/dryad.7vp288f/3
title: Detailed kinematic data for all dives of Tuna 2

description: Each row represents a single ascent/descent of the tuna carrying a multi-sensor tag. All columns and their units are described in a separate sheet of the file.
DOI: 10.5061/dryad.812p16c/3
title: kraussii aviary pollen in anthers

description: Pollen grains remaining in anthers of open flowers on male plants after each trial. Measured to assess pollen removal by the sunbird (Fig 2b)
DOI: 10.5061/dryad.812p16c/4
title: kraussii aviary pollen on stigma

description: Pollen grains deposited by Malachite sunbird on stigmas of open flowers (female plants) after each trial (Fig 2c).
DOI: 10.5061/dryad.8pm4nv0/1
title: Fig. 1D_ultrasound propagation on device

description: Finite element method (FEM) simulation of the ultrasound acoustic pressure propagation through water and the VI-TEG.
DOI: 10.5061/dryad.8pm4nv0/2
title: Fig. 1E_total displacement from the device by ultrasound

description: FEM simulation of the VI-TEG’s vibrations in water at 5 mm under the 20 kHz ultrasound probe
DOI: 10.5061/dryad.8pm4nv0/3
title: Fig.2C_Output voltage at 40M impedance_100ms time interval

description: Triboelectric voltage at 40 MΩ impedance, measured data in 100ms time interval
DOI: 10.5061/dryad.8pm4nv0/4
title: Fig.2C_Output voltage at 40M impedance_400us time interval

description: Triboelectric voltage at 40 MΩ impedance, measured data in 400us time interval
DOI: 10.5061/dryad.8rr0498/1
title: Chicago collision data

description: Records of collisions from McCormick Place (MP) and the rest of Chicago (CHI) used in the analyses in this paper.
DOI: 10.5061/dryad.8rr0498/2
title: Cleveland collision data

description: Collision records from Cleveland used in the analyses
DOI: 10.5061/dryad.8rr0498/3
title: McCormick Place light scores
DOI: 10.5061/dryad.9r06k/1
title: MSM-GC result 31-8-59
DOI: 10.5061/dryad.bd26mq0/1
title: Individual-level traits and diet data for theridiid spiders species

description: Spider species [Spp], Individual ID [ID], body size [Pwidt], capture web volume [webvol], latency to attack [LA], latency to resume movement [LR], host tree [Tree], sampling tiime [Time], Total number of captured prey [TotalPrey], other columns: diet matrix (i.e., abundance of prey in different taxonomic Orders)
DOI: 10.5061/dryad.c670tq2/4
title: model_4

description: Final model with interaction between treatment and primary or secondary RP
DOI: 10.5061/dryad.c8c83nr/1
title: Data

description: Zipped files and a README file, containing variable descriptions and explanations.
DOI: 10.5061/dryad.cr65269/4
title: Table_S4

description: Table S4  Raw inoculation experiment data
DOI: 10.5061/dryad.f456k4f/5
title: Current clamp dataset for CA1 pyramidal neurons stimulated with patterned stimulation of CA3 neurons - part 1

description: This zipped file contains the first part of the CA1 current clamp data in the form of python pickle files. Each file contains the data for the photodiode recordings, the photostimulation coordinates, and the associated traces for all stimuli to a single CA1 neuron. For example codes to access the data, please visit the github repository associated with the paper: https://github.com/sahilm89/linearity
DOI: 10.5061/dryad.f456k4f/6
title: Current clamp dataset for CA3 pyramidal neurons stimulated with patterned stimulation of CA3 neurons

description: This zipped file contains the first part of the CA3 current clamp data in the form of python pickle files. Each file contains the data for the photodiode recordings, the photostimulation coordinates, and the associated traces for all stimuli to a single CA3 neuron. For example codes to access the data, please visit the github repository associated with the paper: https://github.com/sahilm89/linearity
DOI: 10.5061/dryad.f456k4f/7
title: Current clamp dataset for CA1 pyramidal neurons stimulated with patterned stimulation of CA3 neurons - part 2

description: This zipped file contains the second part of the CA1 current clamp data in the form of python pickle files. Each file contains the data for the photodiode recordings, the photostimulation coordinates, and the associated traces for all stimuli to a single CA1 neuron. For example codes to access the data, please visit the github repository associated with the paper: https://github.com/sahilm89/linearity
DOI: 10.5061/dryad.f456k4f/8
title: Current clamp dataset for CA1 pyramidal neurons stimulated with patterned stimulation of CA3 neurons (Control and GABAzine)

description: This zipped file contains the CA1 current clamp data in the form of python pickle files. Each file contains the data for the photodiode recordings, the photostimulation coordinates, and the associated traces for all stimuli to a single CA1 neuron both in the presence and absence of GABAzine. For example codes to access the data, please visit the github repository associated with the paper: https://github.com/sahilm89/linearity
DOI: 10.5061/dryad.f456k4f/9
title: Voltage clamp dataset for CA1 pyramidal neurons stimulated with patterned stimulation of CA3 neurons

description: This zipped file contains the first part of the CA1 voltage clamp data in the form of python pickle files. Each file contains the data for the photodiode recordings, the photostimulation coordinates, and the associated traces for all stimuli to a single CA1 neuron clamped to both excitatory and inhibitory reversal potentials. For example codes to access the data, please visit the github repository associated with the paper: https://github.com/sahilm89/linearity.
DOI: 10.5061/dryad.gd8038s/1
title: Datasets S1 to S10. Phylogenetic datasets

description: Phylogenetic datasets used in our analyses. Each dataset is a nexus file including a tree distribution with 100 trees (except for planktonic foraminifera).
DOI: 10.5061/dryad.gr61mv4/1
title: Simulation data from residence time modeling

description: This compressed file is a directory that contains four files, each containing data from 10,000 individual-based models (IBMs). The file active.RAD-Data.csv contains simulated species rank-abundance data from the active portions of communities. The file RAD-Data.csv contains simulated species rank-abundance data from entire communities (active + dormant). Finally, the SimData.csv file contains all other simulated data resulting from residence time IBMs and needed to reproduce all figures for the associated manuscript.
DOI: 10.5061/dryad.j022f80/1
title: G. paniculata color morph data files

description: This folder contains raw sequence files, fasta files for the color morphs & reference sequences, aligned files for MEGA, and the nexus file used to create the haplotype network in PopART.