cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20374479
title: Data.xlsx

description: Data of the characteristics of street networks and other built environments.
DOI: 10.5281/zenodo.6905812
title: A Theory of Scrum Team Effectiveness: Dataset and Supplementary Materials

description: This bundle contains supplementary materials for an upcoming academic publication <em>A Theory of Scrum Team Effectiveness</em>, by Christiaan Verwijs and Daniel Russo. Included in the bundle are the dataset, SPSS syntaxes, and model definitions (AMOS). This replication package is made available by C. Verwijs under a "Creative Commons Attribution Non-Commercial Share-Alike 4.0 International"-license (CC-BY-NC-SA 4.0). <strong>About the dataset</strong> The dataset (SPSS) contains anonymized response data from 4.940 respondents from 1.978 Scrum Teams that participated from the https://scrumteamsurvey.org. Data was gathered between June 3, 2020, and October 13, 2021. We cleaned the individual response data from careless responses and removed all data that could potentially identify teams, individuals, or their parent organizations. Because we wanted to analyze our measures at the team level, we calculated a team level mean for each item in the survey. Such aggregation is only justified when at least 10% of the variance exists at the team level (Hair, 2019), which was the case (ICC = 51%). Because the percentage of missing data was modest, and to prevent list-wise deletion of cases and lose information, we performed EM maximum likelihood imputation in SPSS. The dataset contains question labels and answer option definitions. To conform to the privacy statement of scrumteamsurvey.org, the bundle does not include individual response data from before the team-level aggregation. <strong>About the model definitions</strong> The bundle includes definitions for Structural Equation Models (SEM) for AMOS. We added the four iterations of the measurement model, four models used to perform a test for common method bias, the final path model, and the model used for mediation testing. Mediation testing was performed with the procedure outlined by Podsakoff (2003). Mediation testing was performed with the "Indirect Effects" plugin for AMOS by James Gaskin. <strong>About the SPSS syntaxes</strong> The bundle includes the syntaxes we used to prepare the dataset from the raw import, as well as the syntax we used to generate descriptives. This is mostly there for other researchers to verify our procedure.
DOI: 10.5281/zenodo.4773873
title: A Theory of Scrum Team Effectiveness: Dataset and Supplementary Materials

description: This bundle contains supplementary materials for an upcoming academic publication <em>A Theory of Scrum Team Effectiveness</em>, by Christiaan Verwijs and Daniel Russo. Included in the bundle are the dataset, SPSS syntaxes, and model definitions (AMOS). This replication package is made available by C. Verwijs under a "Creative Commons Attribution Non-Commercial Share-Alike 4.0 International"-license (CC-BY-NC-SA 4.0). <strong>About the dataset</strong> The dataset (SPSS) contains anonymized response data from 4.940 respondents from 1.978 Scrum Teams that participated from the https://scrumteamsurvey.org. Data was gathered between June 3, 2020, and October 13, 2021. We cleaned the individual response data from careless responses and removed all data that could potentially identify teams, individuals, or their parent organizations. Because we wanted to analyze our measures at the team level, we calculated a team level mean for each item in the survey. Such aggregation is only justified when at least 10% of the variance exists at the team level (Hair, 2019), which was the case (ICC = 51%). Because the percentage of missing data was modest, and to prevent list-wise deletion of cases and lose information, we performed EM maximum likelihood imputation in SPSS. The dataset contains question labels and answer option definitions. To conform to the privacy statement of scrumteamsurvey.org, the bundle does not include individual response data from before the team-level aggregation. <strong>About the model definitions</strong> The bundle includes definitions for Structural Equation Models (SEM) for AMOS. We added the four iterations of the measurement model, four models used to perform a test for common method bias, the final path model, and the model used for mediation testing. Mediation testing was performed with the procedure outlined by Podsakoff (2003). Mediation testing was performed with the "Indirect Effects" plugin for AMOS by James Gaskin. <strong>About the SPSS syntaxes</strong> The bundle includes the syntaxes we used to prepare the dataset from the raw import, as well as the syntax we used to generate descriptives. This is mostly there for other researchers to verify our procedure.
DOI: 10.5281/zenodo.6786760
title: Raw datasets for work on aberration-corrected transmission electron microscopy with Zernike phase plates

description: Raw data (electron microscopy images and spectra) obtained for work on aberration-corrected transmission electron microscopy with Zernike phase plates as published in Ultramicroscopy.
DOI: 10.5281/zenodo.6786759
title: Raw datasets for work on aberration-corrected transmission electron microscopy with Zernike phase plates

description: Raw data (electron microscopy images and spectra) obtained for work on aberration-corrected transmission electron microscopy with Zernike phase plates as published in Ultramicroscopy.
DOI: 10.6084/m9.figshare.20374596
title: Additional file 2 of Glycoprotein α-Subunit of Glucosidase II (GIIα) is a novel prognostic biomarker correlated with unfavorable outcome of urothelial carcinoma

description: Additional file 2: Supplementary Table S1. Survival analysis of the glycoproteinscorrelated with prognosis of the UCs in TCGA data.
DOI: 10.6084/m9.figshare.20374599
title: Additional file 3 of Glycoprotein α-Subunit of Glucosidase II (GIIα) is a novel prognostic biomarker correlated with unfavorable outcome of urothelial carcinoma

description: Additional file 3: Supplementary Table S2. Full results of the Univariate analysis ofglycogenes correlated with UC prognosis in TCGA/BLCA cohort.
DOI: 10.6084/m9.figshare.20374602
title: Additional file 4 of Glycoprotein α-Subunit of Glucosidase II (GIIα) is a novel prognostic biomarker correlated with unfavorable outcome of urothelial carcinoma

description: Additional file 4: Supplementary Table S3. Correlation analysis of clincal factors andGANAB gene expression in TCGA-BLCA dataset.
DOI: 10.6084/m9.figshare.20374596.v1
title: Additional file 2 of Glycoprotein α-Subunit of Glucosidase II (GIIα) is a novel prognostic biomarker correlated with unfavorable outcome of urothelial carcinoma

description: Additional file 2: Supplementary Table S1. Survival analysis of the glycoproteinscorrelated with prognosis of the UCs in TCGA data.
DOI: 10.6084/m9.figshare.20374599.v1
title: Additional file 3 of Glycoprotein α-Subunit of Glucosidase II (GIIα) is a novel prognostic biomarker correlated with unfavorable outcome of urothelial carcinoma

description: Additional file 3: Supplementary Table S2. Full results of the Univariate analysis ofglycogenes correlated with UC prognosis in TCGA/BLCA cohort.
DOI: 10.6084/m9.figshare.20374602.v1
title: Additional file 4 of Glycoprotein α-Subunit of Glucosidase II (GIIα) is a novel prognostic biomarker correlated with unfavorable outcome of urothelial carcinoma

description: Additional file 4: Supplementary Table S3. Correlation analysis of clincal factors andGANAB gene expression in TCGA-BLCA dataset.
DOI: 10.6084/m9.figshare.20374644
title: Additional file 1 of YKL-40 changes are not detected in post-mortem brain of patients with Alzheimer’s disease and frontotemporal lobar degeneration

description: Additional file 1: Supplementary Table 1. Additional information for the individual cases included in this study.
DOI: 10.6084/m9.figshare.20374644.v1
title: Additional file 1 of YKL-40 changes are not detected in post-mortem brain of patients with Alzheimer’s disease and frontotemporal lobar degeneration

description: Additional file 1: Supplementary Table 1. Additional information for the individual cases included in this study.
DOI: 10.6084/m9.figshare.20374654.v1
title: Additional file 2 of Online selection of a physician by patients: the impression formation perspective

description: Additional file 2. The experiment data collected.
DOI: 10.6084/m9.figshare.20374654
title: Additional file 2 of Online selection of a physician by patients: the impression formation perspective

description: Additional file 2. The experiment data collected.
DOI: 10.6084/m9.figshare.20374690
title: Additional file 4 of Landscape scale ecology of Tetracladium spp. fungal root endophytes

description: Additional file 4. Metadata tables. A - Metadata table from the 25 farms. B – Bulk soil properties from each five reps of the 37 field sites. C - Tetracladium OTU relative abundances across samples. D – Mean Tetracladium OTU relative abundances across the three sampled compartments. E – Closest sequence matches in the UNITE database with DOIs.
DOI: 10.6084/m9.figshare.20374690.v1
title: Additional file 4 of Landscape scale ecology of Tetracladium spp. fungal root endophytes

description: Additional file 4. Metadata tables. A - Metadata table from the 25 farms. B – Bulk soil properties from each five reps of the 37 field sites. C - Tetracladium OTU relative abundances across samples. D – Mean Tetracladium OTU relative abundances across the three sampled compartments. E – Closest sequence matches in the UNITE database with DOIs.
DOI: 10.6084/m9.figshare.20374693
title: Additional file 5 of Landscape scale ecology of Tetracladium spp. fungal root endophytes

description: Additional file 5. Dunn’s test results correcting for P values with Benjamini–Hochberg method. Comparing previous crop types across the different compartments in OTU 19 and OTU 1088.
DOI: 10.6084/m9.figshare.20374696
title: Additional file 6 of Landscape scale ecology of Tetracladium spp. fungal root endophytes

description: Additional file 6. Dunn’s test results correcting for P values with Benjamini–Hochberg method. Comparing OTU 19 and OTU 1088 relative abundance in different oilseed rape varieties in the roots.
DOI: 10.6084/m9.figshare.20374693.v1
title: Additional file 5 of Landscape scale ecology of Tetracladium spp. fungal root endophytes

description: Additional file 5. Dunn’s test results correcting for P values with Benjamini–Hochberg method. Comparing previous crop types across the different compartments in OTU 19 and OTU 1088.
DOI: 10.6084/m9.figshare.20374696.v1
title: Additional file 6 of Landscape scale ecology of Tetracladium spp. fungal root endophytes

description: Additional file 6. Dunn’s test results correcting for P values with Benjamini–Hochberg method. Comparing OTU 19 and OTU 1088 relative abundance in different oilseed rape varieties in the roots.
DOI: 10.6084/m9.figshare.20374708
title: Additional file 1 of The Malay version of the attitudes and beliefs about cardiovascular disease (ABCD-M) risk questionnaire: a translation, reliability and validation study

description: Additional file 1.
DOI: 10.6084/m9.figshare.20374708.v1
title: Additional file 1 of The Malay version of the attitudes and beliefs about cardiovascular disease (ABCD-M) risk questionnaire: a translation, reliability and validation study

description: Additional file 1.
DOI: 10.6084/m9.figshare.20374533
title: FrontiersInMarineScicence_Tidal_effects_BAM

description: The model setup and outputs control files
DOI: 10.6084/m9.figshare.20374533.v1
title: FrontiersInMarineScicence_Tidal_effects_BAM

description: The model setup and outputs control files
DOI: 10.6084/m9.figshare.20374743
title: Additional file 1 of Frontloading of stress response genes enhances robustness to environmental change in chimeric corals

description: Additional file 1: Supplementary table 1: Temperature and light intensity data set for the shallow (2m) and deep (10m) platforms during the 48h of experiment. Supplementary table 2: Temperatures and light regimes at the sallow (2m) and deep (10m) platforms during the 48h of experiment. Supplementary table 3: Metadata associated to each sample used in the study; treatment, chimeric statue, expected number of hots genome, sample ID, mother colony of origin, number of tri-allelic (or more) locus, microsatellite dysplaying tri-allelic (or more) locus, number of MNPs, number of MNPs with n allele&gt;2, Relative quantity of MNPs with n allele&gt;2. Supplementary table 4: ITS2 OTU table. Supplementary table 5: 16S OTU table. Supplementary table 6: Mapping results against the host or symbiont genome. Supplementary table 7: Differentially expressed genes between non-chimeras host and chimeras host at 10m. Supplementary table 8: Differentially expressed genes between non-chimeras host and chimeras host at 2m. Supplementary table 9: Differentially expressed genes between symbiont hosted in non-chimeras and in chimeras at 10m. Supplementary table 10: Differentially expressed genes between symbiont hosted in non-chimeras and in chimeras at 2m. Supplementary table 11: Differentially expressed genes between 2m and 10m in non-chimeras. Supplementary table 12: Differentially expressed genes between 2m and 10m in chimeras. Supplementary table 13: Differentially expressed genes between 2m and 10m in symbiont hosted in non-chimeras. Supplementary table 12: Differentially expressed genes between 2m and 10m in symbiont hosted in chimeras.
DOI: 10.6084/m9.figshare.20374743.v1
title: Additional file 1 of Frontloading of stress response genes enhances robustness to environmental change in chimeric corals

description: Additional file 1: Supplementary table 1: Temperature and light intensity data set for the shallow (2m) and deep (10m) platforms during the 48h of experiment. Supplementary table 2: Temperatures and light regimes at the sallow (2m) and deep (10m) platforms during the 48h of experiment. Supplementary table 3: Metadata associated to each sample used in the study; treatment, chimeric statue, expected number of hots genome, sample ID, mother colony of origin, number of tri-allelic (or more) locus, microsatellite dysplaying tri-allelic (or more) locus, number of MNPs, number of MNPs with n allele&gt;2, Relative quantity of MNPs with n allele&gt;2. Supplementary table 4: ITS2 OTU table. Supplementary table 5: 16S OTU table. Supplementary table 6: Mapping results against the host or symbiont genome. Supplementary table 7: Differentially expressed genes between non-chimeras host and chimeras host at 10m. Supplementary table 8: Differentially expressed genes between non-chimeras host and chimeras host at 2m. Supplementary table 9: Differentially expressed genes between symbiont hosted in non-chimeras and in chimeras at 10m. Supplementary table 10: Differentially expressed genes between symbiont hosted in non-chimeras and in chimeras at 2m. Supplementary table 11: Differentially expressed genes between 2m and 10m in non-chimeras. Supplementary table 12: Differentially expressed genes between 2m and 10m in chimeras. Supplementary table 13: Differentially expressed genes between 2m and 10m in symbiont hosted in non-chimeras. Supplementary table 12: Differentially expressed genes between 2m and 10m in symbiont hosted in chimeras.
DOI: 10.6084/m9.figshare.20374735
title: Additional file 1 of The value of fractional exhaled nitric oxide in occupational diseases – a systematic review

description: Additional file 1.
DOI: 10.6084/m9.figshare.20374735.v1
title: Additional file 1 of The value of fractional exhaled nitric oxide in occupational diseases – a systematic review

description: Additional file 1.
DOI: 10.6084/m9.figshare.20374741
title: Additional file 3 of The value of fractional exhaled nitric oxide in occupational diseases – a systematic review

description: Additional file 3.
DOI: 10.6084/m9.figshare.20374744
title: Additional file 4 of The value of fractional exhaled nitric oxide in occupational diseases – a systematic review

description: Additional file 4.
DOI: 10.6084/m9.figshare.20374738
title: Additional file 2 of The value of fractional exhaled nitric oxide in occupational diseases – a systematic review

description: Additional file 2.
DOI: 10.6084/m9.figshare.20374744.v1
title: Additional file 4 of The value of fractional exhaled nitric oxide in occupational diseases – a systematic review

description: Additional file 4.
DOI: 10.6084/m9.figshare.20374738.v1
title: Additional file 2 of The value of fractional exhaled nitric oxide in occupational diseases – a systematic review

description: Additional file 2.
DOI: 10.6084/m9.figshare.20374741.v1
title: Additional file 3 of The value of fractional exhaled nitric oxide in occupational diseases – a systematic review

description: Additional file 3.
DOI: 10.6084/m9.figshare.20374747
title: Additional file 5 of The value of fractional exhaled nitric oxide in occupational diseases – a systematic review

description: Additional file 5.
DOI: 10.6084/m9.figshare.20374747.v1
title: Additional file 5 of The value of fractional exhaled nitric oxide in occupational diseases – a systematic review

description: Additional file 5.
DOI: 10.6084/m9.figshare.20374750
title: Additional file 6 of The value of fractional exhaled nitric oxide in occupational diseases – a systematic review

description: Additional file 6.
DOI: 10.6084/m9.figshare.20374750.v1
title: Additional file 6 of The value of fractional exhaled nitric oxide in occupational diseases – a systematic review

description: Additional file 6.
DOI: 10.6084/m9.figshare.20374756
title: Additional file 2 of In silico discovery of blood cell macromolecular associations

description: Additional file 2.
DOI: 10.6084/m9.figshare.20374756.v1
title: Additional file 2 of In silico discovery of blood cell macromolecular associations

description: Additional file 2.
DOI: 10.6084/m9.figshare.20374767
title: Additional file 2 of Xanthine oxidase inhibitor urate-lowering therapy titration to target decreases serum free fatty acids in gout and suppresses lipolysis by adipocytes

description: Additional file 2: Supplementary Table 1. Included the 1105 compounds of known identity from the Metabolon platform. Supplementary Table 2. Relative levels of fatty acids identified in the UCSD cohort. Supplementary Table 3. Fatty acids identified in the Omaha cohort. Concentrations are reported in pmol/mL of plasma.
DOI: 10.6084/m9.figshare.20374767.v1
title: Additional file 2 of Xanthine oxidase inhibitor urate-lowering therapy titration to target decreases serum free fatty acids in gout and suppresses lipolysis by adipocytes

description: Additional file 2: Supplementary Table 1. Included the 1105 compounds of known identity from the Metabolon platform. Supplementary Table 2. Relative levels of fatty acids identified in the UCSD cohort. Supplementary Table 3. Fatty acids identified in the Omaha cohort. Concentrations are reported in pmol/mL of plasma.
DOI: 10.6084/m9.figshare.20374771
title: Additional file 10 of Single-cell multimodal analysis identifies common regulatory programs in synovial fibroblasts of rheumatoid arthritis patients and modeled TNF-driven arthritis

description: Additional file 10: Table S9. Functional enrichment analysis, Human-Mouse.
DOI: 10.6084/m9.figshare.20374771.v1
title: Additional file 10 of Single-cell multimodal analysis identifies common regulatory programs in synovial fibroblasts of rheumatoid arthritis patients and modeled TNF-driven arthritis

description: Additional file 10: Table S9. Functional enrichment analysis, Human-Mouse.
DOI: 10.6084/m9.figshare.20374774
title: Additional file 11 of Single-cell multimodal analysis identifies common regulatory programs in synovial fibroblasts of rheumatoid arthritis patients and modeled TNF-driven arthritis

description: Additional file 11: Table S10. Target genes of interest and Functional enrichment analysis of Mouse-Human regulons.
DOI: 10.6084/m9.figshare.20374774.v1
title: Additional file 11 of Single-cell multimodal analysis identifies common regulatory programs in synovial fibroblasts of rheumatoid arthritis patients and modeled TNF-driven arthritis

description: Additional file 11: Table S10. Target genes of interest and Functional enrichment analysis of Mouse-Human regulons.
DOI: 10.6084/m9.figshare.20374780
title: Additional file 2 of Single-cell multimodal analysis identifies common regulatory programs in synovial fibroblasts of rheumatoid arthritis patients and modeled TNF-driven arthritis

description: Additional file 2: Table S1. Cluster marker genes.
DOI: 10.6084/m9.figshare.20374780.v1
title: Additional file 2 of Single-cell multimodal analysis identifies common regulatory programs in synovial fibroblasts of rheumatoid arthritis patients and modeled TNF-driven arthritis

description: Additional file 2: Table S1. Cluster marker genes.
DOI: 10.6084/m9.figshare.20374783
title: Additional file 3 of Single-cell multimodal analysis identifies common regulatory programs in synovial fibroblasts of rheumatoid arthritis patients and modeled TNF-driven arthritis

description: Additional file 3: Table S2. Functional enrichment analysis on mouse scRNA-seq DE gene lists.
DOI: 10.6084/m9.figshare.20374783.v1
title: Additional file 3 of Single-cell multimodal analysis identifies common regulatory programs in synovial fibroblasts of rheumatoid arthritis patients and modeled TNF-driven arthritis

description: Additional file 3: Table S2. Functional enrichment analysis on mouse scRNA-seq DE gene lists.
DOI: 10.6084/m9.figshare.20374786
title: Additional file 4 of Single-cell multimodal analysis identifies common regulatory programs in synovial fibroblasts of rheumatoid arthritis patients and modeled TNF-driven arthritis

description: Additional file 4: Table S3. Functional enrichment analysis S4.a sub-clusters.
DOI: 10.6084/m9.figshare.20374786.v1
title: Additional file 4 of Single-cell multimodal analysis identifies common regulatory programs in synovial fibroblasts of rheumatoid arthritis patients and modeled TNF-driven arthritis

description: Additional file 4: Table S3. Functional enrichment analysis S4.a sub-clusters.
DOI: 10.6084/m9.figshare.20374789
title: Additional file 5 of Single-cell multimodal analysis identifies common regulatory programs in synovial fibroblasts of rheumatoid arthritis patients and modeled TNF-driven arthritis

description: Additional file 5: Table S4. Bulk RNA-seq Deseq2 files.
DOI: 10.6084/m9.figshare.20374789.v1
title: Additional file 5 of Single-cell multimodal analysis identifies common regulatory programs in synovial fibroblasts of rheumatoid arthritis patients and modeled TNF-driven arthritis

description: Additional file 5: Table S4. Bulk RNA-seq Deseq2 files.
DOI: 10.6084/m9.figshare.20374792
title: Additional file 6 of Single-cell multimodal analysis identifies common regulatory programs in synovial fibroblasts of rheumatoid arthritis patients and modeled TNF-driven arthritis

description: Additional file 6: Table S5. Regulated genes of Ar and Runx1.
DOI: 10.6084/m9.figshare.20374792.v1
title: Additional file 6 of Single-cell multimodal analysis identifies common regulatory programs in synovial fibroblasts of rheumatoid arthritis patients and modeled TNF-driven arthritis

description: Additional file 6: Table S5. Regulated genes of Ar and Runx1.
DOI: 10.6084/m9.figshare.20374798
title: Additional file 8 of Single-cell multimodal analysis identifies common regulatory programs in synovial fibroblasts of rheumatoid arthritis patients and modeled TNF-driven arthritis

description: Additional file 8: Table S7. Functional enrichment analysis on 107 disease driver genes.
DOI: 10.6084/m9.figshare.20374801
title: Additional file 9 of Single-cell multimodal analysis identifies common regulatory programs in synovial fibroblasts of rheumatoid arthritis patients and modeled TNF-driven arthritis

description: Additional file 9: Table S8. Cluster marker genes, Human-Mouse analysis.