cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/qneuue
title: MetroVR

description: This file Metro Experiment.zip contains two folders, the “MetroUE5_windows” and “RawData”. The first folder contains the executable of the original experiment for reproducibility purposes. The experiment was designed to study the walking trajectories in a photorealistic virtual reality scenario, populated with virtual humans in a spatially constrained environment (metro). It contains the file “MetroUE5.exe” which features the experiment and a file “README.txt” with instructions on how to run it. The second folder “RawData”, contains the dataset from 38 individuals who were tested for the purposes of the main objective of the project ForEVR, to study the perception of virtual human motion and their effect on users’ physical avoidance behaviour in virtual reality. The data is anonymised and contains information about the participants’ gender, age, experience with virtual humans and VR and subjective responses to the questionnaires (place illusion, social presence, personality traits, embodiment and free comments) and ordered based on full or on missing data of the walking trajectories. The data is presented in the form of csv files with the x and y coordinates of the participant’s HMD in the virtual environment for each frame of the VR experience. The folder also contains resampled data, which was used to compute the proximity metrics. The full experiment and results are published in the publication: Patotskaya, Y. et al. (2023). Avoiding virtual humans in a constrained environment: exploration of novel behavioural measures. Computers and Graphics.
DOI: 10.57745/ojbtse
title: Annual glacier surface flow velocity product from Sentinel-2 data for some mountain ranges in the Tropical Andes

description: Glacier ice flow velocity is an important variable to document the past and current status of the glacier worldwide. Our aim with this dataset is to provide innovative products for glaciers and their environments from remote sensing data for some mountain ranges in the Tropical Andes in southern Peru and Bolivia. The data set proposed here includes maps of annual glacier surface flow velocities for the period 2013-2022, created from Sentinel-2 optical data with the work-flow presented in Mouginot et al. (2023) and Rabatel et al. (2023). It can be used for the monitoring of glacier dynamics or for hazards detection associated to glaciers destabilization, as well as an input of model calibration and validation. These products are distributed in both netCDF and GeoTiff formats, georeferenced under the UTM-19S projection and with a pixel resolution of 50 metres. In the netCDF the following variables can be found: - v(time, y, x): Annual ice surface velocity between 2013-2022 in metres per year - dir(y, x): Direction of the ice flow represented as the angle between the flow vector and x-axis. vx = v*cos(direction) and vy = v*sin(direction) - cnt(y, x): Number of measurements used for the regression - stdev(y, x): The error on surface ice speed (metres per year) is given as the standard deviation obtained from the results of the regression. - stdeva(y, x): The error on surface ice speed (metres per year) direction is given as the standard deviation obtained from the results of the regression. - flag(y, x): Error flag mask on pixels considered as unreliable. Pixels with a coefficient of variation of the glacier surface flow velocity higher than 75% and with a standard deviation of the glacier flow direction higher than 2.5° are masked. Masked pixels: 0 Non-masked pixels: NaN - trend(y, x): Trends generated from velocities in metres/year**2, with a median filter of size 5 pixels. -trend_mask(y,x): Trend significance mask, based on Kendall rank of correlation. The same layers can be found as separated geotiff files, with the following names: ANDES_CROYAL_wFLAG_OLS_v2013-2022_cnt.tiff ANDES_CROYAL_wFLAG_OLS_v2013-2022_dir.tiff ANDES_CROYAL_wFLAG_OLS_v2013-2022_flag.tiff ANDES_CROYAL_wFLAG_OLS_v2013-2022.nc ANDES_CROYAL_wFLAG_OLS_v2013-2022_stdeva.tiff ANDES_CROYAL_wFLAG_OLS_v2013-2022_stdev.tiff ANDES_CROYAL_wFLAG_OLS_v2013-2022_trendmask.tiff ANDES_CROYAL_wFLAG_OLS_v2013-2022_trend.tiff ANDES_CROYAL_wFLAG_OLS_v2013-2022_vo2013.tiff ANDES_CROYAL_wFLAG_OLS_v2013-2022_vo2014.tiff ANDES_CROYAL_wFLAG_OLS_v2013-2022_vo2015.tiff ANDES_CROYAL_wFLAG_OLS_v2013-2022_vo2016.tiff ANDES_CROYAL_wFLAG_OLS_v2013-2022_vo2017.tiff ANDES_CROYAL_wFLAG_OLS_v2013-2022_vo2018.tiff ANDES_CROYAL_wFLAG_OLS_v2013-2022_vo2019.tiff ANDES_CROYAL_wFLAG_OLS_v2013-2022_vo2020.tiff ANDES_CROYAL_wFLAG_OLS_v2013-2022_vo2021.tiff ANDES_CROYAL_wFLAG_OLS_v2013-2022_vo2022.tiff
DOI: 10.57745/pk6pbu
title: Analyse_4_stat

description: stat
DOI: 10.57745/qabwhf
title: Validation de l’efficacité de 3 anticorps neutralisant le SARS-CoV-2 dans le cadre de l’étude QuickMabCovid chez la souris

description: IMAGES HISTOLOGIQUES de poumons et cerveau de souris K18
DOI: 10.57745/neyp0r
title: MassiveFold data for target H1244 - T294

description: MassiveFold data generated for CASP16, in collaboration with CAPRI . 8040 predictions were generated for the target = 1005 x 8 sets of parameters. - a description of the setup can be found in `MassiveFold_CASP16_Abstract.pdf` - `README.txt` describes the contents of the main `MassiveFold.tar.gz` file - the main `MassiveFold.tar.gz file contains all the predictions, divided into 8 folders named after the conditions. It contains predictions as well as pickle files, sequence alignments, rankings and plots. The README.txt file describes the contents of this tar.gz. - the `only_pdbs_MassiveFold.tar.gz` is the result of the `gather_runs.py` script, without the pickle files. It contains a list of all the pdb files and ranking files with scores. - `gather_runs.py` allows to gather the runs, to use preferentially to the one included in the main `MassiveFold.tar.gz` at the time of the prediction phase, because it has been updated - `combined_scores.csv` file contains the CASP assessment for the target (from https://predictioncenter.org/) - `CAPRI_assessment.csv` file contains the CAPRI assessment for the target (from https://www.capri-docking.org/assessment/) - `CAPRI_scoring.pdb.gz` is a multi-pdbs containing all the MassiveFold predictions for the target. It was used for the CAPRI scoring phase.
DOI: 10.57745/ra5dac
title: MilkOligoThesaurus: A milk oligosaccharide thesaurus (HoloOLIGO project)

description: This dataset is a thesaurus (MilkOligoThesaurus) gathering milk oligosaccharide names. This dataset is a table of names of unique milk oligosaccharide (rows) and descriptors (columns) including the name of the molecule, abbreviation, chemical database ID if available, chemical information (monoisotopic mass, osidic composition, molecular formula), synonyms, isomer groups, and scientific articles sources. The archive also includes two RDF serializations (in RDF/XML and TTL) of the dataset based on the W3C SKOS standard. The intermediate tabular file that allowed to produce these serializations with SkosPlay!, a free online convertion tool is included. A datapaper has been published in Data In Brief to detail how data were collected, described and transformed (https://doi.org/10.1016/j.dib.2024.110404) . English
DOI: 10.57745/rf5put
title: Datasets of variants from DNAseq and RNAseq in pigs

description: These datasets correspond to .vcf files (variants calling files) obtained from DNAseq and RNAseq in different tissues in pigs. Dataset1 corresponds to data generated from reciprocal crosses used to study genomic imprinting in hypothalamus and muscle in 1day piglets. Dataset2 corresponds to data generated from reciprocal crosses used to study genomic imprinting in placenta in 110days post-fertilization fetuses. Metadata of individuals (pedigree) are also available. - Dataset1_DNAseq_variants_final.vcf.gz corresponds to variants identified from blood DNA in both parents and offspring (n=14) only on autosomes; - Dataset1_RNAseq_hypothalamus_variants_final.vcf.gz corresponds to variants identified from hypothalamus RNA in offpsring (n=9) only on autosomes; - Dataset1_RNAseq_muscle_variants_final.vcf.gz corresponds to variants identified from muscle RNA in offpsring (n=9) only on autosomes; - Dataset1_Metadata_Pedigree.txt corresponds to pedigree information and samples ID in Dataset1; - Dataset2_DNAseq_variants_final.vcf.gz corresponds to variants reconstructed from DNA in both parents and offspring (n=71) only on autosomes; - Dataset2_RNAseq_placenta_variants_final.vcf.gz corresponds to variants identified from placenta RNA in fetuses (n=54) only on autosomes; - Dataset2_Metadata_Pedigree.txt corresponds to pedigree information and samples ID in Dataset2. Both datasets are used in the preprint https://doi.org/10.1101/2025.03.09.642261
DOI: 10.57745/npp6ym
title: RPG Explorer Crop successions France 2007-2014, 2007-2020, 2015-2020

description: Explorez les dynamiques agricoles de votre territoire grâce aux séquences de culture RPG Explorer. Les séquences de cultures RPG Explorer sont construites à partir des données du Registre Parcellaire Graphique sur la période 2007-2020. Le traitement des données a été réalisé avec l'outil RPG Explorer développé par l'UMR SADAPT (version 1.10.97). Pour chaque département de l'hexagone on fournit les séquences de cultures sur les 3 périodes (2007-2014), (2015-2020) et (2007-2020). Ces données sont établies au niveau de l'entité spatiale élémentaire résultant de l'intersection des parcelles (2015-2020) et des îlots (2007-2014) déclarés chaque année par les exploitants agricoles dans le cadre de la Politique Agricole Commune (PAC). Cette entité est associée à un identifiant unique correspondant à la concaténation des numéros pris par les îlots/parcelles sur chacune des années de la période considérée. Les données sont fournies regroupé pour chaque département au sein d’un fichier geopackage (.gpkg), ce type de fichier s’utilise à l’aide du logiciel QGIS. Les cultures sont décrites selon 28 groupes de cultures pour la période 2007-2014 et pour plus de 300 cultures pour la période 2015-2020. L'information sur l'ensemble des codes utilisés pour décrire les cultures est donnée dans le fichier « ListCultures ». Le référentiel officiel du RPG est fourni dans le fichier « CultureRPG ». La qualité d’une séquence est spécifiée par la variable « qualif_seq » qui indique la règle ayant permise la construction de la séquence, une séquence qualifiée en 1 correspond au meilleur cas de figure (Voir Levavasseur et al. 2016) et une séquence en 8 correspond à une séquence non déterminée, soit le pire cas de figure. Par ailleurs, quand une surface n'est pas déclarée une année son numéro de parcelle/îlot prend la mention « abs » (absent). Il en résulte que les séquences ne peuvent, au mieux, concerner que les surfaces déclarées. Structure des données id_unique : Concaténation des id_XXXX idXXXX : Identifiant unique de la parcelle ou de l’îlot pour l’année XXXX cultXXXX : Code culture (voir CultureRPG) pour l’année XXXX grpcultinterXXXX : Code groupe de culture (voir ListCultures) pour l’année XXXX sequence : Séquence de culture (voir ListCultures.csv) seq_grpcultinter : Liste des groupes de cultures intermédiaires (voir ListCultures) seq_cult : Liste des cultures (à partir de 2015) (voir CultureRPG) qualif_seq : Indicateur de qualité de la séquence produite
DOI: 10.57745/qlqz16
title: Replication data for "From intestine to beyond: Salmonella entry factors display distinct transcription pattern upon infection in murine models"

description: Abstract of the publication: The infectious process of bacteria of the genus Salmonella requires the finely regulated use of various virulence factors. Among them, the type 3 secretion system-1 (T3SS-1) and the Rck and PagN invasins are involved in the internalization of the pathogen within eukaryotic cells, but their precise role in the host and in the pathogenic process is still poorly understood. In this study, we aimed to determine the kinetics of expression of these entry factors in a typhoid fever-like and a gastroenteritis model in mice by in vivo imaging using bioluminescent Salmonella Typhimurium reporter strains carrying chromosomal transcriptional fusions. Only pagN and T3SS-1 transcription has been clearly identified. Independently of the pathological model, the cecum was identified as the main transcription site of both pagN and the T3SS-1-encoding gene both at early and late stages of the infection. An intense transcription of pagN was also observed in deep organs in the typhoid fever-like model, while that of T3SS-1 remained quite sporadic in these organs, and mainly focused on the intestine all along the infection. This work will help to understand the respective role of these entry factors at the cellular level in the pathogenesis of Salmonella in vivo. The dataset correspond to the luminescence raw data for all organs.
DOI: 10.57745/qrbinb
title: High-resolution Downscaling of Disposable Income in Europe using Open-source Data

description: We present here a new gridded dataset of per capita disposable income for 42 European countries at a 1km resolution in 2015. This dataset was created by downscaling a vectorial dataset of disposable income. Income is expressed in constant 2015 EU27 PPP€. Income was only estimated for grid-points with a population equal or higher to one. We provide a European file (Europe_disp_inc_2015.tif) and individual country files.
DOI: 10.57745/lxzvqv
title: Downscaled climate projections (1971-2100) for the Ain-Albarine river basin (France)

description: Downscaled projections of temperature, precipitation, and reference evapotranspiration for the Ain river basin (which includes the Albarine DRN). 3 SSP scenarios and 5 climate models.
DOI: 10.57745/olbxkt
title: Aging study on twenty A123 18650 Graphite/LFP 1.1 Ah cells

description: Abstract The dataset gives a comprehensive data collection focusing on the ageing of twenty 18650 Graphite/LFP 1.1 Ah commercial cells in first and second life. The ageing from a pristine state up to 40 % of capacity loss is uncommon due to the extensive testing time required. Therefore, this new data collection provides insights on long-term ageing of lithium-ion batteries. The initial aim of the study was to comprehend the aging in first and second-life applications, with a special focus on the sudden acceleration of capacity loss that can occur after a long-term use. The ageing experiment was designed to assess the impact of various test conditions: electric vehicle use, high current charge and discharge, full or partial discharge and a reduced operating voltage window. The cells were characterised every 100 cycles to measure the remaining capacity and the pseudo-open-circuit-voltage. This dataset can help the research community in studying second-life applications or any other study on long-term ageing of Graphite/LFP batteries: new diagnosis and prognosis techniques, AI, battery modelling, and more. Data description For more information about the experiment and the dataset, please refer to the open-access data paper : Wheeler, W., Bultel, Y., Venet, P. et al. An ageing study of twenty 18650 lithium-ion Graphite/LFP cells in first and second life use. Sci Data 12, 392 (2025). https://doi.org/10.1038/s41597-025-04712-7.
DOI: 10.57745/osndzh
title: Monitoring of full scale composting experiment

description: The initial amount of biowastes was separated in two windrows of 20 t each. The materials batch was mixed with the compostable plastics (1.28 wt%), the control batch was used as is. Both batches were monitored by measuring temperature and humidity. The temperature of the two batches was recorded at 8 points distributed in the composting pile at 0.5 m and 1.5 m depth using large scale thermocouples (Hanna instruments, France). The moisture content was analysed by drying a representative sample in an oven at 103 ± 1°C until constant weight.
DOI: 10.57745/pk0wor
title: Inventaire données UEPAO

description: Inventaire par activité de toutes les données générées dans l'unité expérimentale PAO.
DOI: 10.57745/pmc2qz
title: Broken rice

description: Properties of the broken rice used for experiments in rotary kilns and drums
DOI: 10.57745/qvd8mx
title: Thermo-gravimetric analysis of plastic fragments sampled during the composting process

description: The evolution of the thermal stability of the materials during the composting process was assessed by Thermo-Gravimetric Analysis (TGA) using a Mettler TGA2 apparatus (Mettler Toledo, USA). Thermal analyses were performed from 25 °C up to 800 °C at 5 °C/min under nitrogen flow (20 mL/min). An average weight of 10 mg was used each time, if possible, with regards to the available quantities, measurements were duplicated. Because this measurement was destructive but needed at least 10 mg of mass, it was carried out on mixed samples of different size classes.
DOI: 10.57745/qyyb9d
title: MassiveFold data for target H1232 - T278

description: MassiveFold data generated for CASP16, in collaboration with CAPRI . 8040 predictions were generated for the target = 1005 x 8 sets of parameters. - a description of the setup can be found in `MassiveFold_CASP16_Abstract.pdf` - `README.txt` describes the contents of the main `MassiveFold.tar.gz` file - the main `MassiveFold.tar.gz file contains all the predictions, divided into 8 folders named after the conditions. It contains predictions as well as pickle files, sequence alignments, rankings and plots. The README.txt file describes the contents of this tar.gz. - the `only_pdbs_MassiveFold.tar.gz` is the result of the `gather_runs.py` script, without the pickle files. It contains a list of all the pdb files and ranking files with scores. - `gather_runs.py` allows to gather the runs, to use preferentially to the one included in the main `MassiveFold.tar.gz` at the time of the prediction phase, because it has been updated - `combined_scores.csv` file contains the CASP assessment for the target (from https://predictioncenter.org/) - `CAPRI_assessment.csv` file contains the CAPRI assessment for the target (from https://www.capri-docking.org/assessment/) - `CAPRI_scoring.pdb.gz` is a multi-pdbs containing all the MassiveFold predictions for the target. It was used for the CAPRI scoring phase.
DOI: 10.57745/rf63pi
title: Residence Time Distribution - kiln 1 - sand

description: Residence Time Distribution (RTD) experiments conducted with spherical particles (sand; 0.55 mm in diameter) flowing inside a pilot-scale rotary kiln (10.13 cm in diameter; 1.95 m in length)
DOI: 10.57745/rr3fbn
title: MassiveFold data for target T1284

description: MassiveFold data generated for CASP16, in collaboration with CAPRI . 8040 predictions were generated for the target = 1005 x 8 sets of parameters. - a description of the setup can be found in `MassiveFold_CASP16_Abstract.pdf` - `README.txt` describes the contents of the main `MassiveFold.tar.gz` file - the main `MassiveFold.tar.gz file contains all the predictions, divided into 8 folders named after the conditions. It contains predictions as well as pickle files, sequence alignments, rankings and plots. The README.txt file describes the contents of this tar.gz. - the `only_pdbs_MassiveFold.tar.gz` is the result of the `gather_runs.py` script, without the pickle files. It contains a list of all the pdb files and ranking files with scores. - `gather_runs.py` allows to gather the runs, to use preferentially to the one included in the main `MassiveFold.tar.gz` at the time of the prediction phase, because it has been updated - `combined_scores.csv` file contains the CASP assessment for the target (from https://predictioncenter.org/)
DOI: 10.57745/m0jcd2
title: Data from visual observations and Axel Medria sensor acquired on grazing dairy cow in Herbipole Marcenat experimental facility to validate the reliability of the sensor data

description: Le premier jeu de données contient des données résultant d'observations visuelles continues agrégées au pas de temps de 5 min sur la base de l'activité majoritairement observée sur la période et des données dites "normalisées" issus du pré-traitement des données par Medria. Les données ont été collectées sur 2 x 6 vaches laitières au pâturage, observées 5 x 6 h en 2018 et 2024. Ces données ont servi à une analayse sensibilité/spécificité/précision/justesse. Le second jeu de données consiste en une agrégation des mêmes données à l'échelle de la période d'observation pour étudier la concordance entre les temps totaux observées et les temps totaux enregistrés par les capteurs par animal et par jour.
DOI: 10.57745/nlygep
title: Fiches de résultats des modèles hydrologiques de surface du projet Explore2 : I Fleuves côtiers bas normands

description: Ensemble de fiche descriptives des résultats du projet Explore2 aux points de simulation pour la région hydrologique I Fleuves côtiers bas normands Notice de lecture des fiches de résultats des modèles hydrologiques de surface Le projet Explore2 a produit une quantité inédite de données hydrologiques. Ainsi, des ensembles de projections hydrologiques ont été élaborés sur près de 4000 points de simulation répartis en France hexagonale. Dans un esprit de faciliter la diffusion des résultats et suite à des recommandations faites post-Explore2070, des fiches de synthèse viennent décrire les évolutions de statistiques de débit (descripteurs du régime hydrologique). Ces fiches sont toutes construites sur un schéma identique et privilégient des représentations graphiques. Elles se focalisent sur les résultats concernant les débits obtenus avec le scénario d’émission le plus émetteur (RCP8.5) et aux points disposant de projections issus d’au moins quatre modèles hydrologiques de surface. L’objectif visé des fiches est de donner à voir l’évolution de quelques variables clefs descriptives du régime hydrologique. Les valeurs numériques ne doivent pas être lues sur ces fiches, mais dans les fichiers de données brutes ou d’indicateurs pré-calculés mis à disposition, comme les fiches de synthèse, sur le portail « DRIAS les futurs de l’eau ». Ce document a pour objectif d’expliciter le contenu de ces fiches de synthèse des résultats.
DOI: 10.15468/dl.um74t4
title: Occurrence Download

description: A dataset containing 5741 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "Geometry POLYGON((-83.04541 37.95372,-83.8866 37.25882,-86.62962 34.25979,-81.36303 33.89406,-79.71722 37.2954,-83.04541 37.95372))",
 "TaxonKey is Danaus plexippus (Linnaeus, 1758)"
 ]
}

 The dataset includes 5741 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030570-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jegckp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"in","key":"TAXON_KEY","values":["1"],"matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["Preserved Specimen","Material Citation"],"matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030566-240626123714530/datasets/export for details.
DOI: 10.15468/dl.xtvgny
title: Occurrence Download

description: A dataset containing 2340 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-41.01799 -16.05101,-41.10389 -16.16973,-41.18545 -16.18075,-41.25617 -16.22882,-41.20538 -16.40843,-41.03229 -16.44938,-40.87483 -16.38344,-40.88492 -16.30219,-40.88451 -16.18569,-40.89918 -16.07324,-41.01799 -16.05101))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2340 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030572-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.