cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13237459
title: Additional file 10 of Plastomes of eight Ligusticum species: characterization, genome evolution, and phylogenetic relationships

description: Additional file 10: Table S9. Genetic distance of the eight Ligusticum plastomes.
DOI: 10.6084/m9.figshare.13237465.v1
title: Additional file 12 of Plastomes of eight Ligusticum species: characterization, genome evolution, and phylogenetic relationships

description: Additional file 12: Table S11. List of species and their accession numbers in GenBank included in the phylogenetic analysis.
DOI: 10.6084/m9.figshare.13237492.v1
title: Additional file 8 of Plastomes of eight Ligusticum species: characterization, genome evolution, and phylogenetic relationships

description: Additional file 8: Table S7. The Indel and SNP in the eight Ligusticum plastomes.
DOI: 10.6084/m9.figshare.13237495
title: Additional file 9 of Plastomes of eight Ligusticum species: characterization, genome evolution, and phylogenetic relationships

description: Additional file 9: Table S8. Percentages of variable characters in coding and non-coding regions.
DOI: 10.6084/m9.figshare.13237495.v1
title: Additional file 9 of Plastomes of eight Ligusticum species: characterization, genome evolution, and phylogenetic relationships

description: Additional file 9: Table S8. Percentages of variable characters in coding and non-coding regions.
DOI: 10.6084/m9.figshare.13237480
title: Additional file 4 of Plastomes of eight Ligusticum species: characterization, genome evolution, and phylogenetic relationships

description: Additional file 4: Table S3. Base compositions of protein-coding genes for the eight Ligusticum plastomes.
DOI: 10.6084/m9.figshare.13237486
title: Additional file 6 of Plastomes of eight Ligusticum species: characterization, genome evolution, and phylogenetic relationships

description: Additional file 6: Table S5. The repeat sequences distribution in the eight Ligusticum plastomes.
DOI: 10.6084/m9.figshare.13237483.v1
title: Additional file 5 of Plastomes of eight Ligusticum species: characterization, genome evolution, and phylogenetic relationships

description: Additional file 5: Table S4. RNA editing sites analyses of the eight Ligusticum plastomes.
DOI: 10.6084/m9.figshare.13237486.v1
title: Additional file 6 of Plastomes of eight Ligusticum species: characterization, genome evolution, and phylogenetic relationships

description: Additional file 6: Table S5. The repeat sequences distribution in the eight Ligusticum plastomes.
DOI: 10.6084/m9.figshare.13237474.v1
title: Additional file 2 of Plastomes of eight Ligusticum species: characterization, genome evolution, and phylogenetic relationships

description: Additional file 2: Table S1. List of genes present in the eight Ligusticum plastomes.
DOI: 10.6084/m9.figshare.13237468
title: Additional file 13 of Plastomes of eight Ligusticum species: characterization, genome evolution, and phylogenetic relationships

description: Additional file 13: Table S12. Collection locality and voucher information are provided for eight sequenced plastomes.
DOI: 10.6084/m9.figshare.13237489.v1
title: Additional file 7 of Plastomes of eight Ligusticum species: characterization, genome evolution, and phylogenetic relationships

description: Additional file 7: Table S6. Simple sequence repeats (SSRs) distribution in the eight Ligusticum plastomes.
DOI: 10.6084/m9.figshare.13237462
title: Additional file 11 of Plastomes of eight Ligusticum species: characterization, genome evolution, and phylogenetic relationships

description: Additional file 11: Table S10. Results of selective pressure analysis in Paml with the site-specific model.
DOI: 10.6084/m9.figshare.13237489
title: Additional file 7 of Plastomes of eight Ligusticum species: characterization, genome evolution, and phylogenetic relationships

description: Additional file 7: Table S6. Simple sequence repeats (SSRs) distribution in the eight Ligusticum plastomes.
DOI: 10.6084/m9.figshare.11966937
title: Additional file 22 of Impact of plants on the diversity and activity of methylotrophs in soil

description: Additional file 21. Putative and confirmed methylotrophs identified in the wheat rhizosphere using multiple approaches.
DOI: 10.6084/m9.figshare.11966937.v1
title: Additional file 22 of Impact of plants on the diversity and activity of methylotrophs in soil

description: Additional file 21. Putative and confirmed methylotrophs identified in the wheat rhizosphere using multiple approaches.
DOI: 10.6084/m9.figshare.11966910.v1
title: Additional file 17 of Impact of plants on the diversity and activity of methylotrophs in soil

description: Additional file 16. BLAST scoring details of unique mdh2 sequences identified in metagenomes produced from methanol enriched soils.
DOI: 10.6084/m9.figshare.11966940
title: Additional file 23 of Impact of plants on the diversity and activity of methylotrophs in soil

description: Additional file 22. Putative and confirmed methylotrophs identified in the unplanted soil using multiple approaches.
DOI: 10.6084/m9.figshare.11966910
title: Additional file 17 of Impact of plants on the diversity and activity of methylotrophs in soil

description: Additional file 16. BLAST scoring details of unique mdh2 sequences identified in metagenomes produced from methanol enriched soils.
DOI: 10.6084/m9.figshare.11966934.v1
title: Additional file 21 of Impact of plants on the diversity and activity of methylotrophs in soil

description: Additional file 20. Putative and confirmed methylotrophs identified in the pea rhizosphere using multiple approaches.
DOI: 10.6084/m9.figshare.11966934
title: Additional file 21 of Impact of plants on the diversity and activity of methylotrophs in soil

description: Additional file 20. Putative and confirmed methylotrophs identified in the pea rhizosphere using multiple approaches.
DOI: 10.6084/m9.figshare.11966940.v1
title: Additional file 23 of Impact of plants on the diversity and activity of methylotrophs in soil

description: Additional file 22. Putative and confirmed methylotrophs identified in the unplanted soil using multiple approaches.
DOI: 10.6084/m9.figshare.13237573.v1
title: Additional file 2 of Family matters: skin microbiome reflects the social group and spatial proximity in wild zebra finches

description: Additional file 2: Excel file containing metadata, OTUs and sequences used for analyses in R and Primer-e.
DOI: 10.6084/m9.figshare.13237573
title: Additional file 2 of Family matters: skin microbiome reflects the social group and spatial proximity in wild zebra finches

description: Additional file 2: Excel file containing metadata, OTUs and sequences used for analyses in R and Primer-e.
DOI: 10.6084/m9.figshare.13040896.v1
title: Additional file 2 of Investigating host-microbiome interactions by droplet based microfluidics

description: Additional file 2. Table S3. Functional and taxonomical annotation of the metagenomic sequences.
DOI: 10.6084/m9.figshare.13040896
title: Additional file 2 of Investigating host-microbiome interactions by droplet based microfluidics

description: Additional file 2. Table S3. Functional and taxonomical annotation of the metagenomic sequences.
DOI: 10.6084/m9.figshare.13237618
title: Additional file 10 of Characterizing the cirri and gut microbiomes of the intertidal barnacle Semibalanus balanoides

description: Additional file 10: Supplementary Table 5. Alpha diversity metrics.
DOI: 10.6084/m9.figshare.13237618.v1
title: Additional file 10 of Characterizing the cirri and gut microbiomes of the intertidal barnacle Semibalanus balanoides

description: Additional file 10: Supplementary Table 5. Alpha diversity metrics.
DOI: 10.6084/m9.figshare.13237621.v1
title: Additional file 11 of Characterizing the cirri and gut microbiomes of the intertidal barnacle Semibalanus balanoides

description: Additional file 11: Supplementary Table 6. Abundance of ASVs specific to gut and cirri based on species indicator analysis.
DOI: 10.6084/m9.figshare.13237624
title: Additional file 12 of Characterizing the cirri and gut microbiomes of the intertidal barnacle Semibalanus balanoides

description: Additional file 12: Supplementary Table 7. Abundance of ASVs specific to LC and HH based on species indicator analysis.
DOI: 10.6084/m9.figshare.13237627
title: Additional file 13 of Characterizing the cirri and gut microbiomes of the intertidal barnacle Semibalanus balanoides

description: Additional file 13: Supplementary Table 8. PICRUSt output.
DOI: 10.6084/m9.figshare.13237621
title: Additional file 11 of Characterizing the cirri and gut microbiomes of the intertidal barnacle Semibalanus balanoides

description: Additional file 11: Supplementary Table 6. Abundance of ASVs specific to gut and cirri based on species indicator analysis.
DOI: 10.6084/m9.figshare.13237624.v1
title: Additional file 12 of Characterizing the cirri and gut microbiomes of the intertidal barnacle Semibalanus balanoides

description: Additional file 12: Supplementary Table 7. Abundance of ASVs specific to LC and HH based on species indicator analysis.
DOI: 10.6084/m9.figshare.13237645
title: Additional file 6 of Characterizing the cirri and gut microbiomes of the intertidal barnacle Semibalanus balanoides

description: Additional file 6: Supplementary Table 1. Mapping file and ASV counts.
DOI: 10.6084/m9.figshare.13237645.v1
title: Additional file 6 of Characterizing the cirri and gut microbiomes of the intertidal barnacle Semibalanus balanoides

description: Additional file 6: Supplementary Table 1. Mapping file and ASV counts.
DOI: 10.6084/m9.figshare.13237648
title: Additional file 7 of Characterizing the cirri and gut microbiomes of the intertidal barnacle Semibalanus balanoides

description: Additional file 7: Supplementary Table 2. Taxa abundance at each level for gut and cirri samples.
DOI: 10.6084/m9.figshare.13237654.v1
title: Additional file 9 of Characterizing the cirri and gut microbiomes of the intertidal barnacle Semibalanus balanoides

description: Additional file 9: Supplementary Table 4. Abundance at phylum and class level from Aldred and Nelson [4].
DOI: 10.6084/m9.figshare.13237648.v1
title: Additional file 7 of Characterizing the cirri and gut microbiomes of the intertidal barnacle Semibalanus balanoides

description: Additional file 7: Supplementary Table 2. Taxa abundance at each level for gut and cirri samples.
DOI: 10.6084/m9.figshare.13237627.v1
title: Additional file 13 of Characterizing the cirri and gut microbiomes of the intertidal barnacle Semibalanus balanoides

description: Additional file 13: Supplementary Table 8. PICRUSt output.
DOI: 10.6084/m9.figshare.13237651
title: Additional file 8 of Characterizing the cirri and gut microbiomes of the intertidal barnacle Semibalanus balanoides

description: Additional file 8: Supplementary Table 3. Taxa at 70% prevalence from core microbiome analysis.
DOI: 10.6084/m9.figshare.13237654
title: Additional file 9 of Characterizing the cirri and gut microbiomes of the intertidal barnacle Semibalanus balanoides

description: Additional file 9: Supplementary Table 4. Abundance at phylum and class level from Aldred and Nelson [4].
DOI: 10.6084/m9.figshare.13018105
title: Additional file 2 of Soil origin and plant genotype structure distinct microbiome compartments in the model legume Medicago truncatula

description: Additional file 2:. Table S2 Full OTU information including total sequence count, sequence distribution across compartments, sequence distribution across genotypes, sequence distribution across soil location, LEfSe results (where significant) and to which compartment, LEfSe results (where significant) and to which soils, representative OTU sequences, and full OTU taxonomy string (with bootstrap support for taxonomic rank).
DOI: 10.6084/m9.figshare.13237651.v1
title: Additional file 8 of Characterizing the cirri and gut microbiomes of the intertidal barnacle Semibalanus balanoides

description: Additional file 8: Supplementary Table 3. Taxa at 70% prevalence from core microbiome analysis.
DOI: 10.6084/m9.figshare.13018129.v1
title: Additional file 9 of Soil origin and plant genotype structure distinct microbiome compartments in the model legume Medicago truncatula

description: Additional file 9:. Table S6 Primer and MID sequence information for 16S rRNA gene amplicon sequencing, with sample identifications. MIDs and forward primer (515f) were used for secondary PCR reactions.
DOI: 10.6084/m9.figshare.13018099.v1
title: Additional file 10 of Soil origin and plant genotype structure distinct microbiome compartments in the model legume Medicago truncatula

description: Additional file 10: Table S7 Sequencing and Assembly Information for Metagenomic Samples. Count of sequences per sample before and after quality control, as well as count of sequences considered plant sequences and Ensifer sequences for each sample. Summarization of reads mapped to plasmid and chromosome for Ensifer medicae WSM419 for each sample.
DOI: 10.6084/m9.figshare.13018123.v1
title: Additional file 7 of Soil origin and plant genotype structure distinct microbiome compartments in the model legume Medicago truncatula

description: Additional file 7: Table S5 Results of BLASTn identification of all demarcated Ensifer MED nodes. Where these MED nodes best matched Ensifer sp. or our OTU1 representative sequence, full blast results are also presented. The four nodes that matched to OTU1 were used for analysis.
DOI: 10.6084/m9.figshare.13018102.v1
title: Additional file 1 of Soil origin and plant genotype structure distinct microbiome compartments in the model legume Medicago truncatula

description: Additional file 1:. Table S1 Full matrix of sequence counts for OTUs (retained) with sample identification. Listed in sample name are soil location (C – Corsica; F – France), genotype (1, 27, 96), replication number (a, b, c, d, e), and plant compartment (L – Leaf; N – Nodule; R – Root (endosphere); and S – Soil (rhizosphere)).
DOI: 10.6084/m9.figshare.13018105.v1
title: Additional file 2 of Soil origin and plant genotype structure distinct microbiome compartments in the model legume Medicago truncatula

description: Additional file 2:. Table S2 Full OTU information including total sequence count, sequence distribution across compartments, sequence distribution across genotypes, sequence distribution across soil location, LEfSe results (where significant) and to which compartment, LEfSe results (where significant) and to which soils, representative OTU sequences, and full OTU taxonomy string (with bootstrap support for taxonomic rank).
DOI: 10.6084/m9.figshare.13018129
title: Additional file 9 of Soil origin and plant genotype structure distinct microbiome compartments in the model legume Medicago truncatula

description: Additional file 9:. Table S6 Primer and MID sequence information for 16S rRNA gene amplicon sequencing, with sample identifications. MIDs and forward primer (515f) were used for secondary PCR reactions.
DOI: 10.6084/m9.figshare.13018102
title: Additional file 1 of Soil origin and plant genotype structure distinct microbiome compartments in the model legume Medicago truncatula

description: Additional file 1:. Table S1 Full matrix of sequence counts for OTUs (retained) with sample identification. Listed in sample name are soil location (C – Corsica; F – France), genotype (1, 27, 96), replication number (a, b, c, d, e), and plant compartment (L – Leaf; N – Nodule; R – Root (endosphere); and S – Soil (rhizosphere)).
DOI: 10.6084/m9.figshare.13018114
title: Additional file 5 of Soil origin and plant genotype structure distinct microbiome compartments in the model legume Medicago truncatula

description: Additional file 5:. Table S3 Core OTUs with taxonomy found within nodule communities across sampling design, an OTU was defined as core if present in &gt;50% nodule samples
DOI: 10.6084/m9.figshare.13018114.v1
title: Additional file 5 of Soil origin and plant genotype structure distinct microbiome compartments in the model legume Medicago truncatula

description: Additional file 5:. Table S3 Core OTUs with taxonomy found within nodule communities across sampling design, an OTU was defined as core if present in &gt;50% nodule samples
DOI: 10.6084/m9.figshare.13018123
title: Additional file 7 of Soil origin and plant genotype structure distinct microbiome compartments in the model legume Medicago truncatula

description: Additional file 7: Table S5 Results of BLASTn identification of all demarcated Ensifer MED nodes. Where these MED nodes best matched Ensifer sp. or our OTU1 representative sequence, full blast results are also presented. The four nodes that matched to OTU1 were used for analysis.
DOI: 10.6084/m9.figshare.13018099
title: Additional file 10 of Soil origin and plant genotype structure distinct microbiome compartments in the model legume Medicago truncatula

description: Additional file 10: Table S7 Sequencing and Assembly Information for Metagenomic Samples. Count of sequences per sample before and after quality control, as well as count of sequences considered plant sequences and Ensifer sequences for each sample. Summarization of reads mapped to plasmid and chromosome for Ensifer medicae WSM419 for each sample.
DOI: 10.6084/m9.figshare.13237665
title: Additional file 1 of Cytogenetic and genomic analysis of a patient with turner syndrome and t(2;12): a case report

description: Additional file 1. ST1 (sheet 1): Supplementary Table 1: Genes implicated in the region loss or gain; ST2 (sheet 2): Supplementary Table 2: Human Diseases associated with 87 (out of 89) autosomal genes found exclusively in the proband, and ST3 (sheet 3): Supplementary Table 3: Clinical findings of Turner Syndrome patients’ carriers of balanced translocations including our case.
DOI: 10.6084/m9.figshare.13237669
title: Additional file 2 of Molecular exploration of paediatric intracranial germinomas from multi-ethnic Singapore

description: Additional file 2: Supplementary Data B. TargetScan 7.2 search result for miR-221-3p.
DOI: 10.6084/m9.figshare.13237665.v1
title: Additional file 1 of Cytogenetic and genomic analysis of a patient with turner syndrome and t(2;12): a case report

description: Additional file 1. ST1 (sheet 1): Supplementary Table 1: Genes implicated in the region loss or gain; ST2 (sheet 2): Supplementary Table 2: Human Diseases associated with 87 (out of 89) autosomal genes found exclusively in the proband, and ST3 (sheet 3): Supplementary Table 3: Clinical findings of Turner Syndrome patients’ carriers of balanced translocations including our case.
DOI: 10.6084/m9.figshare.13237669.v1
title: Additional file 2 of Molecular exploration of paediatric intracranial germinomas from multi-ethnic Singapore

description: Additional file 2: Supplementary Data B. TargetScan 7.2 search result for miR-221-3p.
DOI: 10.6084/m9.figshare.13237689.v1
title: Additional file 6 of Combining epigenetic and clinicopathological variables improves specificity in prognostic prediction in clear cell renal cell carcinoma

description: Additional file 6: Table S6. Prediction results for the considered classifiers and the Mayo scoring system for the 78 non-metastatic patients at diagnosis. Each classifier predicted the patients as either low risk for progress (LRP=0) or high risk for progress (HRP=1).
DOI: 10.6084/m9.figshare.13237686
title: Additional file 5 of Combining epigenetic and clinicopathological variables improves specificity in prognostic prediction in clear cell renal cell carcinoma

description: Additional file 5: Table S5. Mean beta values for the 40 consensus variables identified by DCA for M0-P and M0-PF patients together with p-value comparing average methylation for each cluster using the Mann-Whitney U test.
DOI: 10.6084/m9.figshare.13237680.v1
title: Additional file 3 of Combining epigenetic and clinicopathological variables improves specificity in prognostic prediction in clear cell renal cell carcinoma

description: Additional file 3: Table S3. CpGs with potential relevance for ccRCC prognosis identified in the literature (PI-CpGs). Mean beta values are presented for M0-PF and M0-P patients in our cohort, as well as p-values derived using the Mann-Whitney U test.
DOI: 10.6084/m9.figshare.13237683
title: Additional file 4 of Combining epigenetic and clinicopathological variables improves specificity in prognostic prediction in clear cell renal cell carcinoma

description: Additional file 4: Table S4.CpGs included in the 40 consensus variables identified by DCA.
DOI: 10.6084/m9.figshare.13237677
title: Additional file 2 of Combining epigenetic and clinicopathological variables improves specificity in prognostic prediction in clear cell renal cell carcinoma

description: Additional file 2: Table S2. CpGs with potential relevance for ccRCC prognosis identified in the literature (PI-CpGs).
DOI: 10.6084/m9.figshare.13237686.v1
title: Additional file 5 of Combining epigenetic and clinicopathological variables improves specificity in prognostic prediction in clear cell renal cell carcinoma

description: Additional file 5: Table S5. Mean beta values for the 40 consensus variables identified by DCA for M0-P and M0-PF patients together with p-value comparing average methylation for each cluster using the Mann-Whitney U test.
DOI: 10.6084/m9.figshare.13237677.v1
title: Additional file 2 of Combining epigenetic and clinicopathological variables improves specificity in prognostic prediction in clear cell renal cell carcinoma

description: Additional file 2: Table S2. CpGs with potential relevance for ccRCC prognosis identified in the literature (PI-CpGs).
DOI: 10.6084/m9.figshare.13237689
title: Additional file 6 of Combining epigenetic and clinicopathological variables improves specificity in prognostic prediction in clear cell renal cell carcinoma

description: Additional file 6: Table S6. Prediction results for the considered classifiers and the Mayo scoring system for the 78 non-metastatic patients at diagnosis. Each classifier predicted the patients as either low risk for progress (LRP=0) or high risk for progress (HRP=1).
DOI: 10.6084/m9.figshare.11931096
title: Additional file 1 of Rhizosphere protists are key determinants of plant health

description: Additional file 1: Table S1. Annotation table for assigning protistan functional groups.
DOI: 10.6084/m9.figshare.13237701
title: Additional file 2 of Frequency and methylation status of selected retrotransposition competent L1 loci in amyotrophic lateral sclerosis

description: Additional file 2. Primer sequences used to amplify empty site and 5′ junction of RC-L1 loci and SNRPN locus.
DOI: 10.6084/m9.figshare.13237680
title: Additional file 3 of Combining epigenetic and clinicopathological variables improves specificity in prognostic prediction in clear cell renal cell carcinoma

description: Additional file 3: Table S3. CpGs with potential relevance for ccRCC prognosis identified in the literature (PI-CpGs). Mean beta values are presented for M0-PF and M0-P patients in our cohort, as well as p-values derived using the Mann-Whitney U test.
DOI: 10.6084/m9.figshare.13237683.v1
title: Additional file 4 of Combining epigenetic and clinicopathological variables improves specificity in prognostic prediction in clear cell renal cell carcinoma

description: Additional file 4: Table S4.CpGs included in the 40 consensus variables identified by DCA.
DOI: 10.6084/m9.figshare.11931096.v2
title: Additional file 1 of Rhizosphere protists are key determinants of plant health

description: Additional file 1: Table S1. Annotation table for assigning protistan functional groups.
DOI: 10.6084/m9.figshare.11931096.v1
title: Additional file 1 of Rhizosphere protists are key determinants of plant health

description: Additional file 1: Table S1. Annotation table for assigning protistan functional groups.
DOI: 10.6084/m9.figshare.13237701.v1
title: Additional file 2 of Frequency and methylation status of selected retrotransposition competent L1 loci in amyotrophic lateral sclerosis

description: Additional file 2. Primer sequences used to amplify empty site and 5′ junction of RC-L1 loci and SNRPN locus.