cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pyhf74
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Iphionopsis Anderb."
 ]
}

 The dataset includes 76 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013152-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5s756x9w
title: MassIVE MSV000097781 - Aqueous extract of Ulva lactuca collected from Lombok
title: Auqeous extract of Ulva lactuca, extracted in room temperature, within 24 hours
DOI: 10.15468/dl.frwc9b
title: Occurrence Download

description: A dataset containing 1380 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ullucus tuberosus Caldas)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1380 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076938-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u267za
title: Occurrence Download

description: A dataset containing 549 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Suaeda fruticosa Forssk. ex J.F.Gmel.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 549 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076939-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b236q2
title: Occurrence Download

description: A dataset containing 152 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CollectionKey is 09b6074b-b1e7-4e4f-aecd-6c09abc72e35",
 "TaxonKey is one of (Aplysia Linnaeus, 1767)"
 ]
}

 The dataset includes 152 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076941-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k4j2ur
title: Occurrence Download

description: A dataset containing 912 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hyloxalus vertebralis (Boulenger, 1899)"
 ]
}

 The dataset includes 912 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076942-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zqwa24
title: Occurrence Download

description: A dataset containing 48922 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Suaeda maritima (L.) Dumort.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 48922 records from 372 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076940-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xp8dba
title: Occurrence Download

description: A dataset containing 1397 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Suaeda calceoliformis (Hook.) Moq.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1397 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076944-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18112/openneuro.ds001787.v1.1.1
title: EEG meditation study
DOI: 10.15468/dl.tvcp8h
title: Occurrence Download

description: A dataset containing 185048 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The Australian Phytoplankton Database (1844 onwards)"
 ]
}

 The dataset includes 185048 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076933-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mup9mk
title: Occurrence Download

description: A dataset containing 4454 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Polycnemum arvense L.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4454 records from 168 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076945-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.75yjnr
title: Occurrence Download

description: A dataset containing 94504 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ara ararauna (Linnaeus, 1758)"
 ]
}

 The dataset includes 94504 records from 201 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076943-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.932uss
title: Occurrence Download

description: A dataset containing 4390 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Halogeton glomeratus (M.Bieb.) C.A.Mey.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4390 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076947-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.am58mr
title: Occurrence Download

description: A dataset containing 3415 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Spinacia oleracea L.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3415 records from 221 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076948-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j5c28d
title: Occurrence Download

description: A dataset containing 3509 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Atriplex nummularia Lindl.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3509 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076949-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pcve2r
title: Occurrence Download

description: A dataset containing 369 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "OccurrenceStatus is Present",
 "TaxonKey is Opuntia ficus-indica (L.) Mill."
 ]
}

 The dataset includes 369 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076950-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rfa439
title: Occurrence Download

description: A dataset containing 270811 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trifolium campestre Schreb.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 270811 records from 2228 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076935-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/5th9-w603
title: Sand Point [20BG14] macroinvertebrate dataset

description: Raw data for the Sand Point [20BG14] macroinvertebrate dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/p125-yw38
title: Susie's Lake charcoal dataset

description: Raw data for the Susie's Lake charcoal dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/6cjw-5y52
title: LDDsite3919 water chemistry dataset

description: Raw data for the LDDsite3919 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/skzk-4155
title: Castet pollen dataset

description: Raw data for the Castet pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/phqr-q211
title: Fossitt 1994 Site SS6 charcoal surface sample dataset

description: Raw data for the Fossitt 1994 Site SS6 charcoal surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/ex0c-g739
title: Wyassup Lake diatom surface sample dataset

description: Raw data for the Wyassup Lake diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/2zhq-j448
title: West Lake diatom bottom sample dataset

description: Raw data for the West Lake diatom bottom sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/kh13-rb47
title: Holt Lake diatom surface sample dataset

description: Raw data for the Holt Lake diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.yvtbq6
title: Occurrence Download

description: A dataset containing 892147 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 "Continent is Asia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia",
 "Year 2005-2025"
 ]
}

 The dataset includes 892147 records from 209 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023650-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b98k33
title: Occurrence Download

description: A dataset containing 175694 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 "Continent is Antarctica",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia",
 "Year 2005-2025"
 ]
}

 The dataset includes 175694 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023649-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/q735-3z51
title: Plainfield Pond diatom bottom sample dataset

description: Raw data for the Plainfield Pond diatom bottom sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.rkacp5
title: Occurrence Download

description: A dataset containing 1 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey)) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey)) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey)) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey)) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey)) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey)) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.countrycode = 'BR'
 AND occurrence.datasetkey IN ('7741a517-ab3d-4b85-ae58-56322e44c8ce', '4300f8d5-1ae5-49e5-a101-63894b005868', '3b8e9d83-b2d4-4a97-973c-31d98b67b1e9', 'cbf8c968-37d6-45be-bf5c-e22914a384dc', '2273e40d-26c2-4959-aea2-b6abcce16d09', '4bda7e86-c7c0-440e-bed4-bde6c52a28c2', '5c9a924c-8d45-4452-8604-415a118578aa')
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.taxonkey = 2953861 OR occurrence.acceptedtaxonkey = 2953861 OR occurrence.kingdomkey = 2953861 OR occurrence.phylumkey = 2953861 OR occurrence.classkey = 2953861 OR occurrence.orderkey = 2953861 OR occurrence.familykey = 2953861 OR occurrence.genuskey = 2953861 OR occurrence.specieskey = 2953861)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND occurrence.specieskey IS NOT NULL
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey

 The dataset's 1 records were derived from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023651-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/k46f-xc64
title: JM96-1207 dinoflagellates dataset

description: Raw data for the JM96-1207 dinoflagellates dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/x3k7-q618
title: Kazanie testate amoebae surface sample dataset

description: Raw data for the Kazanie testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/szp5-4a42
title: SJ-19, Hwy 74 pollen surface sample dataset

description: Raw data for the SJ-19, Hwy 74 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.15372895
title: Synthetic Biventricular Heart Meshes Generated by the InSilicoHeartGen Pipeline for Electromechanical Simulations

description: We present a database of synthetic biventricular heart meshes and associated simulation files, generated using the InSilicoHeartGen pipeline (Doste et al. 2025). This dataset comprises 50 cases representing adult human cardiac anatomy.

The meshes were created from point clouds derived using a variational autoencoder, as described by Beetz et al. (2023) and Beetz, Banerjee, and Grau (2022). This generative approach produces anatomies that capture realistic population variability and preserve subpopulation-specific traits, consistent with the original dataset, in this case, the UK Biobank. From these point clouds, surface meshes were reconstructed using a ball pivoting algorithm, and the InSilicoHeartGen pipeline was then applied to generate volumetric meshes and simulation data suitable for in silico electrophysiological and electromechanical simulations.

 

Cardiac Meshes:Each case contains:





Folder with the coarse mesh, including:





an .ensi file with the tetrahedral coarse mesh and associated field data,




a .mat file containing all generated variables




a folder with .csv files used for EP digital twinning as described in (Camps et al., 2025)






Folder with the fine mesh, including:





an .ensi file with the tetrahedral fine mesh and associated field data,




a .mat file containing all generated variables




a folder with .csv files used for EP digital twinning as described in (Camps et al., 2025)




The triangular surface mesh with assigned labels


1  - epicardium2  - endocardium of the left ventricle (LV)3  - endocardium of the right ventricle (RV)4  - basal surface (only in cut geometries)5  - apex (in cut geometries)6  - septal endocardial wall of the RV9  - pulmonary valve10 - aortic valve12 - LV apex on the epicardium13 - mitral valve14 - tricuspid valve18 - RV apex on the endocardium19 - pulmonary valve on the epicardium (in closed meshes)20 - aortic valve on the epicardium (in closed meshes)23 - mitral valve on the epicardium (in closed meshes)24 - tricuspid valve on the epicardium (in closed meshes)

 



A MonoAlg3D folder, containing:









an hexahedral .ensi mesh with all generated fields,




an .alg file formatted for running electrophysiological simulations in MonoAlg3D GPU solver (Sachetto Oliveira et al. 2018)




automatically generated electrode positions.







 

Some of the fields included in each mesh are:





Fibre orientation (longitudinal, sheet, and normal directions)




Transmurality




Transmurality considering the RV septal endocardium as epicardial tissue




Cobiveco coordinates




Repolarisation gradients




AHA segmentation




Material tag definitions
DOI: 10.5281/zenodo.15372896
title: Synthetic Biventricular Heart Meshes Generated by the InSilicoHeartGen Pipeline for Electromechanical Simulations

description: We present a database of synthetic biventricular heart meshes and associated simulation files, generated using the InSilicoHeartGen pipeline (Doste et al. 2025). This dataset comprises 50 cases representing adult human cardiac anatomy.

The meshes were created from point clouds derived using a variational autoencoder, as described by Beetz et al. (2023) and Beetz, Banerjee, and Grau (2022). This generative approach produces anatomies that capture realistic population variability and preserve subpopulation-specific traits, consistent with the original dataset, in this case, the UK Biobank. From these point clouds, surface meshes were reconstructed using a ball pivoting algorithm, and the InSilicoHeartGen pipeline was then applied to generate volumetric meshes and simulation data suitable for in silico electrophysiological and electromechanical simulations.

 

Cardiac Meshes:Each case contains:





Folder with the coarse mesh, including:





an .ensi file with the tetrahedral coarse mesh and associated field data,




a .mat file containing all generated variables




a folder with .csv files used for EP digital twinning as described in (Camps et al., 2025)






Folder with the fine mesh, including:





an .ensi file with the tetrahedral fine mesh and associated field data,




a .mat file containing all generated variables




a folder with .csv files used for EP digital twinning as described in (Camps et al., 2025)




The triangular surface mesh with assigned labels


1  - epicardium2  - endocardium of the left ventricle (LV)3  - endocardium of the right ventricle (RV)4  - basal surface (only in cut geometries)5  - apex (in cut geometries)6  - septal endocardial wall of the RV9  - pulmonary valve10 - aortic valve12 - LV apex on the epicardium13 - mitral valve14 - tricuspid valve18 - RV apex on the endocardium19 - pulmonary valve on the epicardium (in closed meshes)20 - aortic valve on the epicardium (in closed meshes)23 - mitral valve on the epicardium (in closed meshes)24 - tricuspid valve on the epicardium (in closed meshes)

 



A MonoAlg3D folder, containing:









an hexahedral .ensi mesh with all generated fields,




an .alg file formatted for running electrophysiological simulations in MonoAlg3D GPU solver (Sachetto Oliveira et al. 2018)




automatically generated electrode positions.







 

Some of the fields included in each mesh are:





Fibre orientation (longitudinal, sheet, and normal directions)




Transmurality




Transmurality considering the RV septal endocardium as epicardial tissue




Cobiveco coordinates




Repolarisation gradients




AHA segmentation




Material tag definitions
DOI: 10.21233/gz8q-xy64
title: Hoodoo Lake insect dataset

description: Raw data for the Hoodoo Lake insect dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/gms4-kx80
title: Beef Pasture charcoal dataset

description: Raw data for the Beef Pasture charcoal dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.