DOI: 10.5281/zenodo.14613159
title: Copper River Salmon Migration Data, AKSSF 2021

description: #SynopsisThere are indicators that sockeye salmon (Oncorhynchus nerka) of the Copper River, an important population that supports subsistence fisheries in southcentral Alaska, is subjected to elevated inriver mortality during their spawning migration that may be linked to climate change. This mortality has implications for maintaining upriver escapement levels, representing a fundamental challenge to the management of subsistence fisheries in this region. This project will evaluate how changing body size, condition, and overall health of Copper River sockeye salmon may be related to inriver mortality. This work will inform fisheries management and provide insight into how harvest management might adapt to these changes in the future. #Objectives Related to DataObjective 1: Describe body dimensions (particularly body length), migration energy use, reproductive investment, and gene expression related to stress for the mean sockeye salmon migrant in each run-timing group or population of Copper River sockeye salmon during 2021 and relate these measures to migration conditions in the river

Objective 2: Determine which factors explain success or failure in migration and reproduction based on tracking radio-tagged adult sockeye salmon during 2021 and relate success to fish characteristics and river conditions#Narrative Summary of Data

This dataset represents various diverse sampling/analysis/methodological approaches. The PIs have determined 6, and authored scientific metadata according to ISO19110/ISO19115 standard. More information can be found here: https://www.fgdc.gov/metadata/iso-standards and here: https://www.axiomdatascience.com/best-practices/ResourceContent.html#data-table-descriptions

The results are xml files, 2 per approach (totalling 12).

This README provides details about these metadata and the relevant files.

#File manifest

- SalmonBodyCompDataDictionary-ISO19110.xml
- SalmonBodyCompDataDictionary-ISO19115.xml
- SalmonAerialReceiverDataDictionary-ISO19110.xml
- SalmonAerialReceiverDataDictionary-ISO19115.xml
- SalmonGroundReceiverDataDictionary-ISO19110.xml
- SalmonGroundReceiverDataDictionary-ISO19115.xml
- SalmonTaggingDataDictionary-ISO19110.xml
- SalmonTaggingDataDictionary-ISO19115.xml
- SalmonPathogenDataDictionary-ISO19110.xml
- SalmonPathogenDataDictionary-ISO19115.xml
- SalmonTranscriptomeDataDictionary-ISO19110.xml
- SalmonTranscriptomeDataDictionary-ISO19115.xml


#Contents of the XML
The standard applied to form these XML is an application profile used by Axiom Data Science, based on ISO/FGDC standards (see above links for more details).


# Connections to data files
- SalmonBodyCompDataDictionary-ISO19110.xml and SalmonBodyCompDataDictionary-ISO19115.xml: These metadata provide additional context for files including 'bodycomp' in the label, eg CRSockeye_BodyComp_2021Final_AKSSF_October2024.csv

- SalmonAerialReceiverDataDictionary-ISO19110.xml and SalmonAerialReceiverDataDictionary-ISO19115.xml: These metadata provide additional context for files including 'aerial' in the label, eg Aerial_2021_sockeye.csv.

- SalmonGroundReceiverDataDictionary-ISO19110.xml and SalmonGroundReceiverDataDictionary-ISO19115.xml: These metadata provide additional context for files including 'Recx_F' in the label, eg Tazlina_Recx_F_2021.csv.

- SalmonTaggingDataDictionary-ISO19110.xml and SalmonTaggingDataDictionary-ISO19115.xml: These metadata provide additional context for files including 'CopperTagging' in the label, eg CopperTagging_2021_Input.csv.

- SalmonPathogenDataDictionary-ISO19110.xml and SalmonPathogenDataDictionary-ISO19115.xml: These metadata provide additional context for files including 'pathogen' in the label, eg CopperSockeye_2019-2021_Pathogens_FINAL10.16.24.csv.

- SalmonTranscriptomeDataDictionary-ISO19110.xml and SalmonTranscriptomeDataDictionary-ISO19115.xml: These metadata provide additional context for files including 'transcriptome' in the label.