cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17007237
title: Additional file 2 of Testing assembly strategies of Francisella tularensis genomes to infer an evolutionary conservation analysis of genomic structures

description: Additional file 2: Supplementary Figure 2. Bivariate plot of log-transformed read length against base call quality with hexagonal bins and marginal histograms (NanoPlot) of raw reads a) PacBio and b) ONT.
DOI: 10.6084/m9.figshare.17007234
title: Additional file 23 of Testing assembly strategies of Francisella tularensis genomes to infer an evolutionary conservation analysis of genomic structures

description: Additional file 23: Supplementary Table 5. Statistical analysis of hybrid assemblies/ preprocessing effects.
DOI: 10.6084/m9.figshare.17007231
title: Additional file 22 of Testing assembly strategies of Francisella tularensis genomes to infer an evolutionary conservation analysis of genomic structures

description: Additional file 22: Supplementary Table 4. Error rates in hybrid assemblies compared to references.
DOI: 10.6084/m9.figshare.17007228
title: Additional file 21 of Testing assembly strategies of Francisella tularensis genomes to infer an evolutionary conservation analysis of genomic structures

description: Additional file 21: Supplementary Table 3. Performance of long-read and hybrid assemblers in five isolates of F. tularensis.
DOI: 10.5066/p9lawiph
title: Data to Estimate Water Use Associated with Continuous Oil and Gas Development, Permian Basin, United States, 1980-2019.

description: One of the largest conventional oil reservoirs in the United States, the Permian Basin, is becoming one of the world?s largest continuous oil and gas producing reservoirs. Continuous, or horizontal well drilling techniques extract oil and gas by directionally drilling and hydraulically fracturing the surrounding reservoir rock. The continuous extraction of oil and gas using hydraulic fracturing requires large volumes of water, and estimates of the total water volume used in the Continuous Oil and Gas (COG) extraction technique, requires a comprehensive assessment to determine the amount of water needed to extract reservoir resources. This data release contains the input and output files utilized for the assessment of water usage associated with continuous oil production in the Permian Basin. All data points that met the filtering criteria as described in the Data Processing &amp;lt;procdesc&amp;gt; steps were retained in the data release. Further filtering of data points to remove unrealistic values was done prior to modeling. Model simulations were completed for the years 1980-2019. Results were used in the associated Scientific Investigations Report ?Estimates of Water Use Associated with Continuous Oil and Gas Development in the Permian Basin, Texas and New Mexico, 1980?2019? (Valder and others, 2021).
DOI: 10.6084/m9.figshare.17007225
title: Additional file 20 of Testing assembly strategies of Francisella tularensis genomes to infer an evolutionary conservation analysis of genomic structures

description: Additional file 20: Supplementary Table 2. Performance of tested eight short-read assemblers in five isolates of F. tularensis.
DOI: 10.6084/m9.figshare.17007219
title: Additional file 19 of Testing assembly strategies of Francisella tularensis genomes to infer an evolutionary conservation analysis of genomic structures

description: Additional file 19: Supplementary Table 1. Read statistic of raw data and preprocessed reads.
DOI: 10.5066/f7zw1k7t
title: Water chemistry data for samples collected at groundwater sites near the Fruitvale oil field, September 2016-February 2017, Kern County, California

description: As part of the California State Water Resources Control Board's Regional Groundwater Monitoring Program of Water Quality in Areas of Oil and Gas Production, during September 2016-February 2017, the U.S. Geological Survey collected and analyzed groundwater and associated quality-control (QC) samples from 14 water-production wells located within a three mile buffer zone of and in the Fruitvale Oil field, Kern County, California. Samples were analyzed for water-quality indicators, major and minor ions, nutrients, trace elements, volatile organic compounds, naturally occurring radioactive material, geochemical and age-dating tracers, dissolved organic carbon, low molecular weight organic acids, dissolved standard and hydrocarbon gases, and dissolved noble and atmospheric gases. In total, 240 constituents and water-quality indicators were measured. Quality-control samples including replicates; source-solution, equipment, and field blanks; laboratory spikes; and split samples for interlab comparisons were collected at approximately 10 percent of the wells. The water well and associated quality-control sample data are presented in this data release.
DOI: 10.5066/p9on8u5u
title: Atmospheric-loading frequency response functions and groundwater-levels filtered for the effects of atmospheric loading and solid Earth tides for three monitoring wells near Mammoth Lakes, California, 2015 - 2017

description: The data include atmospheric-loading frequency response functions (table 1) and filtered detrended and reconstructed (trends restored) groundwater-levels (tables 2 to 4) computed for selected, parsed time series for three USGS monitoring wells [28A-25-1 (373904118570701); 28A-25-2 (373904118570702); and 14A-25-1 (373927118571701)], and the associated hourly resampled depth-to-water-level and barometric-pressure time-series "pieces" (tables 2 to 4) used to create the parsed series. Digital filters were developed based on the computed water-level response to Earth tides in well 14A-25-1 and barometric pressure in all three wells, and these filters were used to compute the filtered water-level time series in tables 2 and 3 for wells 28A-25-1 and 28A-25-2, respectively, and in table 4 for 14A-25-1. The tables (1-4) and the development of the digital filters and filtering techniques are described in Appendix 2 of the associated publication (https://doi.org/10.3133/ofr20191063).
DOI: 10.5066/f72b8x8g
title: Historical produced water chemistry data compiled for the Fruitvale Oilfield, Kern County, California

description: This dataset contains geochemical and other information for 204 samples of produced water from the Fruitvale petroleum field. Produced water is water coexisting with oil and gas. The historical produced water chemistry data was compiled from preexisting datasets and scanned images into a numerical dataset to characterize produced water chemical characteristics. Each sample is identified by its API (American Petroleum Institute) number, excluding the state code, which is 04 in all California wells, latitude and longitude, well name, formation name, perforation interval, and date tested. The geochemical analyses include major ions, some minor ions, total dissolved solids (TDS), pH, specific gravity, resistivity, electrical conductivity, and charge balance.
DOI: 10.6073/pasta/7d5e352ad50954517a5107632c784aca
title: Jornada Basin LTER: Wireless meteorological station at NPP G-IBPE site: Daily summary data: 2013 - ongoing

description: Daily summary data at NPP G-IBPE met station. Average/maximum/minimum air temperature; average/maximum relative humidity and wind speed and average wind direction. These are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP G-IBPE site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.5066/p9rjkoo6
title: Hawai'i Island Rapid 'Ohi'a Death Ambrosia Beetle Communities and Frass 2018-2019

description: This data release includes data and metadata containing (1) study site locations and elevation where bolts (tree stem sections) infected with Ceratocystis lukuohia and/or C. huliohia were collected on Hawai'i Island, (2) the ambrosia beetle (Coleoptera: Scolytinae) species that were reared from bolts, (3) Ceratocystis spp. viability results from culturing tests of the beetles' frass, (4) frass production estimates from three ambrosia beetle species, and (5) quantitative Polymerase Chain Reaction (qPCR) DNA results of viability subcultures. Data were used in the analysis for the manuscript &quot;Ambrosia beetle communities and frass production in 'Ohi'a (Metrosideros polymorpha) infected with Ceratocystis fungi responsible for Rapid 'Ohi'a Death.&quot; Beetles and frass were collected in the lab from Rapid 'Ohi'a Death-infected trees from 2018-2019.
DOI: 10.5066/p9r00mwf
title: Topographic and Sediment Size Data from Fountain Creek between Colorado Springs and the Confluence with the Arkansas River, Colorado, 2019

description: In 2012, the U.S. Geological Survey (USGS) in cooperation with Colorado Springs Utilities selected 10 study areas along Fountain Creek between Colorado Springs, Colorado and the confluence of Fountain Creek with the Arkansas River for annual geomorphic monitoring. The purpose of this data release is to present topographic survey data, rasters , and sediment size data collected in 2019 as part of that monitoring effort. Topographic survey points were collected using real-time kinematic Global Navigation Satellite Systems (RTK-GNSS). These point data were interpolated to generate digital elevation maps (2015 and 2019) and elevation-change maps (from 2015 to 2019) at each study area . In 2019, two types of Unmanned Aerial Survey (UAS) datasets were also collected and processed at one of the study areas (study area three): (1) a UAS Light Detection and Ranging (LiDAR) point cloud collected using the Yellowscan Surveyor payload (Velodyne VLP16 puck and Applanix Inertial Measurement Unit [IMU]) flown at 150 feet (ft) above ground level using the DJI Matrice 600 UAS aircraft, and (2) a photogrammetric survey taken with the Sony a6000 camera at 200 ft above ground level with the DJI Matrice 600 UAS aircraft, which produced an ortho image, a point cloud, and raster surface model (DSM). The USGS is investigating the use of UAS for traditional river surveys of topography. Traditionally, ground-surveying procedures are required to get the level of accuracy and data needed for the annual reporting. The use of UAS could have substantial time and cost savings to supplement the procedures currently used to complete the monitoring. In addition to topographic surveys, pebble-count data were collected in the Spring of 2019 to characterize the size of streambed sediment. Pebble-count surveys included four measurements of grain size at each of 25 equally spaced sampling stations along four separate cross sections across the active channel of each study area. Annual topographic and sediment size data are used to asses geomorphic changes at each study area.
DOI: 10.6073/pasta/5c6c3b842a36834b76e0eadf35353844
title: Jornada Basin LTER: Wireless meteorological station at NPP G-IBPE site: 1-second summary precipitation data: 2013 - ongoing

description: 1-second summary precipitation data at NPP G-IBPE met station. Total precipitation per second is recorded only if there is measurable precipitation. This is recorded at an automated meteorological station installed at Jornada LTER NPP G-IBPE site.. This climate station is operated by the Jornada LTER Program. IMPORTANT: Rainfall is only recorded when a bucket tip occurs on the tipping bucket rain gauge. If there is missing data due to equipment or other problems, there will be no indication of this within this dataset. The user needs to review precipitation values in the 30 minute or hourly summary datasets to determine if there are missing data in this 1 second detailed precipitation dataset. Reference the package i.d.'s knb-lter-jrn.210437020, knb-lter-jrn.210437035, and knb-lter-jrn.210437050 for the NPP G-IBPE met station 30 minute, hourly, and daily summary datasets, respectively. This is an ONGOING dataset.
DOI: 10.5066/f7z60mj0
title: Soil-Water-Balance model data sets for the St. Louis River drainage basin, northeast Minnesota, 1995-2010

description: A soil-water balance model (SWB) was developed to estimate potential recharge and surface runoff for portions of the St. Louis River drainage basin, northeast Minnesota, for the period 1995 through 2010. The model was used in the creation of St. Louis River streamflow distribution maps, as part of the associated report, U.S. Geological Survey Scientific Investigations Map 2017-3390 (http://dx.doi.org/10.3133/SIM20173390). This SWB model was calibrated using three independent hydrograph separation models: PART, Hysep-fixed, and Hysep-sliding method. The basic framework for this model was the statewide Minnesota SWB potential recharge model, described, calibrated, and documented as part of U.S. Geological Survey Scientific Investigations Report 2015-5038 (http://dx.doi.org/10.3133/sir20155038). Daymet (version 2) daily surface weather data necessary for running this SWB model, including "prcp", "tmax", and "tmin", can be downloaded from an associated SWB model for the Cannon River drainage basin: https://doi.org/10.5066/F72V2DMN. Alternatively, the Daymet v2 are available upon request through the following link: https://doi.org/10.3334/ORNLDAAC/1219.
DOI: 10.5066/p9flxzfg
title: SPARROW model input datasets and predictions of nitrogen loads in streams of the Chesapeake Bay watershed

description: This data release contains mean-annual total nitrogen (TN) loads predicted by a SPARROW model for individual stream and shoreline reaches in the Chesapeake watershed as defined by NHDPlus, a 1:100,000 scale representation of stream hydrography built upon the National Hydrography Dataset (NHD) (Horizon Systems, 2010). Also included are the input variables required to execute the model, including landscape characteristics, nutrient inputs to land, and calibration data from water quality monitoring stations. Further details on model construction and results are described in Ator (2011, https://doi.org/10.3133/sir20115167).
DOI: 10.6073/pasta/bc71d95d5045833e94bf3443386894f7
title: Jornada Basin LTER: Wireless meteorological station at NPP G-IBPE site: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at NPP G-IBPE met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured every 30 minutes at an automated meteorological station installed at Jornada LTER NPP G-IBPE site. Measurements are made every 30 minutes at 10 cm, 20 cm, and 30 cm soil depths. This is an ONGOING dataset.
DOI: 10.6073/pasta/d153f5449ab1bfb2d476677b48d7182f
title: Jornada Basin LTER: Wireless meteorological station at NPP G-IBPE site: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily average of 30-minute Volumetric Water Content at NPP G-IBPE met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured and calculated at an automated meteorological station installed at Jornada LTER NPP G-IBPE site. The daily average at 3 soil depths is calculated from measurements made every 30 minutes at 10 cm, 20 cm, and 30 cm. This is an ONGOING dataset.
DOI: 10.5066/p9oql78n
title: Data release for Evidence of glacial activity during MIS 4 in the Rocky Mountains, Colorado, USA

description: The Ziegler Reservoir fossil site near Snowmass Village, Colorado (USA) provides a rare opportunity to examine environmental conditions in the Rocky Mountains during marine isotope stage (MIS) 4 (71-57 ka). Although recognized as a global-scale cold event, MIS 4 is typically absent from Rocky Mountain glacial chronologies because the geologic evidence was either covered or destroyed during the subsequent, and larger, MIS 2 (Pinedale; 29-14 ka) glaciation. The Ziegler Reservoir site is perched on a ridge above Pinedale glacial limits, which allowed for the preservation of a long-lived sequence of predominantly eolian sediments that spans from late MIS 6 (ca. 140 ka) through early MIS 3 (ca. 55 ka). Sediments dating to MIS 4 exhibit a significant increase in clay-sized particles, which suggests the source areas were enriched with fine-grained material at that time. We hypothesize that this increase in clay content is the result of rock-flour production by nearby valley glaciers that were active in the Rocky Mountains during MIS 4. If correct, our study illustrates how recognizing indirect evidence of glacial activity can result in a more complete record of past climate conditions than what could be achieved by the study of glacial moraines alone.
DOI: 10.6073/pasta/99d37dc38546409f32187243fbfc6531
title: Jornada Basin LTER: Wireless meteorological station at NPP G-SUMM site: 5-minute summary wind and air temperature data: 2013 - ongoing

description: 5-minute summary data at NPP G-SUMM met station. Average air temperature, wind speed and wind direction are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP G-SUMM site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.6073/pasta/e5110acf34fccccf28f081c7155ec527
title: Jornada Basin LTER: Wireless meteorological station at NPP G-SUMM site: 1-hour summary data: 2013 - ongoing

description: Hourly summary data at NPP G-SUMM met station. Average/maximum/minimum air temperature; average relative humidity and wind direction; average/maximum wind speed; solar radiation; albedo. These are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP G-SUMM site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Solar radiation is measured at 3m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.6073/pasta/eb6ae451de8b88932a3a095a7fa552d0
title: Jornada Basin LTER: Wireless meteorological station at NPP G-SUMM site: 30-minute summary data: 2013 - ongoing

description: 30-minute summary data at NPP G-SUMM met station. Average air temperature, relative humidity, wind speed, wind direction, and solar radiation are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP G-SUMM site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Solar radiation is measured at 3m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.6073/pasta/29427e2705cc9eaadde58419a29bc0c9
title: Jornada Basin LTER: Wireless meteorological station at NPP G-SUMM site: Daily summary data: 2013 - ongoing

description: Daily summary data at NPP G-SUMM met station. Average/maximum/minimum air temperature; average/maximum relative humidity and wind speed and average wind direction; solar radiation; albedo. These are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP G-SUMM site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Solar radiation is measured at 3m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.6073/pasta/51426d15c02afb420231894e15e49a32
title: Jornada Basin LTER: Wireless meteorological station at NPP G-SUMM site: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at NPP G-SUMM met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured every 30 minutes at an automated meteorological station installed at Jornada LTER NPP G-SUMM site. Measurements are made every 30 minutes at 10 cm, 20 cm, and 30 cm soil depths. This is an ONGOING dataset.
DOI: 10.6073/pasta/92ed5441514f54833520678715dc85e9
title: Jornada Basin LTER: Wireless meteorological station at NPP G-SUMM site: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily average of 30-minute Volumetric Water Content at NPP G-SUMM met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured and calculated at an automated meteorological station installed at Jornada LTER NPP G-SUMM site. The daily average at 3 soil depths is calculated from measurements made every 30 minutes at 10 cm, 20 cm, and 30 cm. This is an ONGOING dataset.
DOI: 10.6084/m9.figshare.14742708.v1
title: Correlated expression of the opsin retrogene LWS-R and its host gene in two poeciliid fishesUntitled Item

description: qPCR data of LWS-R, LWS-R intron, and GPHN form eyeball and brain of guppy and green swordtail<br>
DOI: 10.6073/pasta/aee87843873a71d52f1983e5e0c09a0a
title: Jornada Basin LTER: Wireless meteorological station at NPP M-NORT site: 5-minute summary air temperature data: 2013 - ongoing

description: 5-minute summary data at NPP M-NORT met station. Average air temperature measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP M-NORT site. Air temperature is measured at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.6073/pasta/532d024fbe04e2009f819230089010d2
title: Jornada Basin LTER: Wireless meteorological station at NPP M-NORT site: 1-hour summary data: 2013 - ongoing

description: Hourly summary data at NPP M-NORT met station. Average/maximum/minimum air temperature; average relative humidity. These are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP M-NORT site. Air temperature and relative humidity are measured at approximately 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.6073/pasta/cd5da165381f7032fa5302dd66b9c615
title: Jornada Basin LTER: Wireless meteorological station at NPP M-NORT site: 30-minute summary data: 2013 - ongoing

description: 30-minute summary data at NPP M-NORT met station. Average air temperature and relative humidity are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP G-SUMM site. Air temperature and relative humidity are measured at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.