cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15825910
title: Theory of Cosmic Architecture (ToCA) Version 2: A Unified Framework for Cosmic and Cognitive Regulation

description: The Theory of Cosmic Architecture  (ToCA) version 2 presents a unified framework for understanding cosmic and cognitive phenomena through tension-balanced regulation. Building on established physics (scalar-tensor theories, entropic gravity) and cognitive science (Friston’s free-energy principle), ToCA introduces the substrate field \phi(x,t) and mass flow vector \vec{v}_m to model emergent dynamics across scales—from galactic rotations to digital consciousness. Version 2 refines the theory by eliminating tuning constants, achieving <0.00005% deviation in simulations against datasets (Planck, LIGO, JWST, SPARC). It resolves cosmological anomalies (e.g., Hubble tension <0.3 sigma) without invoking dark matter, using regulatory balance as a universal principle. ToCA’s interdisciplinary approach connects to Lumea Human, an AGI architecture, by applying tension regulation to digital emotions and lifecycles. This raw manuscript outlines core equations, simulation results, and applications, offering a logical, non-mystical foundation for a new paradigm in physics and artificial intelligence. Licensed under CC-BY-NC-ND to ensure open access for reading while protecting intellectual property
DOI: 10.2909/986b141d-0bd0-4d2e-930e-d8c2fc2da2c1
title: Reference Land Cover in Yangambi 2016-2018 (vector) - version 1, October 2019

description: This metadata refers to the Land Cover vector data generated over Yangambi (Africa) for 2016 in the framework of the Copernicus Global Land Hot Spot Mapping (C-GL-HSM) contract under the coordination of JRC. This area of interest is either mapped with the generic 8 classes dichotomus legend (CAF_99_lc_a) or the detailed modular legend (CAF_99_lc_b).

The mapped area of interest (AOI) represents a key landscape for conservation area (KLC). It is situated in the central part of the Democratic Republic of Congo (DRC), along the Congo River, in the thick central African forest. The KLC has a total size of about 727,622 ha (7276.22 km²), while the Yangambi biosphere reserve has a total area of 223,100 ha (2,231 km²). The site is very important from a biodiversity point of view since it hosts about 32,000 tree species. The elephant (Loxodonta Africana Cyclotis), the river hog (Potamochoerus Porcus) and monkeys (Cercopithecusspp) are present in this area, however they are also among the most threatened species (UNESCO).


Reference time: 2016 - 2018
DOI: 10.5281/zenodo.15473978
title: A new Cambrian stem-group echinoderm reveals the evolution of the anteroposterior axis

description: This dataset consists of original data from the following paper:

Woodgate, S.C., Dunn, F.S., Thompson, J.R., Formery, L., Zamora, S., and Rahman, I.A. 2025. A new Cambrian stem-group echinoderm reveals the evolution of the anteroposterior axis. Current Biology 35: 3488–3495. doi:10.1016/j.cub.2025.05.065

The dataset comprises the R script used for analyses of plate growth (Moroccan_Ctenocystoid_R_Script.R), the character matrix used for phylogenetic analyses (Moroccan_Ctenocystoid_Character_Matrix.nex), and three ZIP files with slices from synchrotron tomography or micro-CT scans and the corresponding 3-D models (Moroccan_Ctenocystoid.zip, Ctenocystis_utahensis.zip, and Austrocidaris_canaliculata.zip).
DOI: 10.5281/zenodo.15473979
title: A new Cambrian stem-group echinoderm reveals the evolution of the anteroposterior axis

description: This dataset consists of original data from the following paper:

Woodgate, S.C., Dunn, F.S., Thompson, J.R., Formery, L., Zamora, S., and Rahman, I.A. 2025. A new Cambrian stem-group echinoderm reveals the evolution of the anteroposterior axis. Current Biology 35: 3488–3495. doi:10.1016/j.cub.2025.05.065

The dataset comprises the R script used for analyses of plate growth (Moroccan_Ctenocystoid_R_Script.R), the character matrix used for phylogenetic analyses (Moroccan_Ctenocystoid_Character_Matrix.nex), and three ZIP files with slices from synchrotron tomography or micro-CT scans and the corresponding 3-D models (Moroccan_Ctenocystoid.zip, Ctenocystis_utahensis.zip, and Austrocidaris_canaliculata.zip).
DOI: 10.5281/zenodo.16323367
title: tm_dataset
DOI: 10.15468/dl.wu4pg3
title: Occurrence Download

description: A dataset containing 2324 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepus saxatilis"
 ]
}

 The dataset includes 2324 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028874-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/zfzhps7chb
title: MHA-RBC Dataset

description: Peripheral Blood Smear Image Microcytic Hypochromic Anemic RBC dataset for Segmentation and classification. Total of 9000 Images with approximately 240,000 to 270,000 RBC elements for training and testing purposes of CNN models :
3000 original RBC images 
3000 binary segmented Images
3000 RGB segmented Images
DOI: 10.15468/dl.kzdmtj
title: Occurrence Download

description: A dataset containing 1186 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Argynnis adippe"
 ]
}

 The dataset includes 1186 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028875-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/zfzhps7chb.1
title: MHA-RBC Dataset

description: Peripheral Blood Smear Image Microcytic Hypochromic Anemic RBC dataset for Segmentation and classification. Total of 9000 Images with approximately 240,000 to 270,000 RBC elements for training and testing purposes of CNN models :
3000 original RBC images 
3000 binary segmented Images
3000 RGB segmented Images
DOI: 10.5281/zenodo.16323478
title: test555

description: some test data
DOI: 10.5281/zenodo.16323479
title: test555

description: some test data
DOI: 10.15468/dl.3wv8eg
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rattus norvegicus",
 "Country is Peru",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028876-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.2909/4967d0bb-75b5-4a22-9f4f-ddabad53bb4d
title: Satellite Image Mosaic IR at the Key Landscapes for Conservation borders (raster) - version 1, Feb. 2023

description: This metadata refers to the Satellite Image Mosaics IR generated over the Key Landscapes for Conservation areas (KLC areas in Africa, Indonesia and Caribbean) in the framework of the Copernicus Global Land Hot Spot Mapping (C-GL-HSM) contract under the coordination of JRC.

The KLC areas for which mosaics are included in the dataset are the following:

Caribbean (CAR_01) specific reference time: 2015-2019
Comoe-Mole (WAF_05) specific reference time: 2014-2018 
Cross River-Takamanda-Mt Cameroon-Korup (CAF_01) specific reference time: 2013-2019 
Garamba-Lantoto-Bili-Uere-Chinko-Southern (CAF_05) specific reference time: 2014-2018 
Great Limpopo (SAF_02) specific reference time: 2014-2018
Grand Virunga (CAF_02) specific reference time: 2014-2018
Kundelungu-Upemba (CAF_11) specific reference time: 2014-2018
Lomami (CAF_15) specific reference time: 2013-2019
Luangwa (SAF_14_15) specific reference time: 2014-2018
Madagascar Forests (SAF_21) specific reference time: 2015-2019
Manovo-Gounda-St Floris-Bamingui (CAF_06) specific reference time: 2013-2019
Mbam Djerem (CAF_16) specific reference time: 2014-2018
Niassa-Selous (EAF_04) specific reference time: 2015-2019
Salonga (CAF_07) specific reference time: 2014-2018
Tai-Sapo (WAF_10) specific reference time: 2014-2018
Timor Leste (PAC_01) specific reference time: 2014-2018
WAPOK (WAF_04) specific reference time: 2015-2019
Yangambi (CAF_99) specific reference time: 2014-2018
DOI: 10.15468/dl.6amc8m
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rattus norvegicus",
 "Country is Philippines",
 "HasCoordinate is true"
 ]
}

 The dataset includes 35 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028877-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6e4a5b
title: Occurrence Download

description: A dataset containing 206 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cylindropuntia lindsayi"
 ]
}

 The dataset includes 206 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028879-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a8zbh4
title: Occurrence Download

description: A dataset containing 151 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Wahlenbergia pusilla",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 151 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028878-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.2909/8ff3d28c-4af9-4736-a2d1-01abd8c79d8c
title: Satellite Image Mosaic RGB at the Key Landscapes for Conservation borders (raster) - version 1, Feb. 2023

description: This metadata refers to the Satellite Image Mosaics RGB generated over the Key Landscapes for Conservation areas (KLC areas in Africa, Indonesia and Caribbean) in the framework of the Copernicus Global Land Hot Spot Mapping (C-GL-HSM) contract under the coordination of JRC.

The KLC areas for which mosaics are included in the dataset are the following:

Caribbean (CAR_01) specific reference time: 2015-2019
Comoe-Mole (WAF_05) specific reference time: 2014-2018
Cross River-Takamanda-Mt Cameroon-Korup (CAF_01) specific reference time: 2013-2019
Garamba-Lantoto-Bili-Uere-Chinko-Southern (CAF_05) specific reference time: 2014-2018
Great Limpopo (SAF_02) specific reference time: 2014-2018
Grand Virunga (CAF_02) specific reference time: 2014-2018
Kundelungu-Upemba (CAF_11) specific reference time: 2014-2018
Lomami (CAF_15) specific reference time: 2013-2019
Luangwa (SAF_14_15) specific reference time: 2014-2018
Madagascar Forests (SAF_21) specific reference time: 2015-2019
Manovo-Gounda-St Floris-Bamingui (CAF_06) specific reference time: 2013-2019
Mbam Djerem (CAF_16) specific reference time: 2014-2018
Niassa-Selous (EAF_04) specific reference time: 2015-2019
Salonga (CAF_07) specific reference time: 2014-2018
Tai-Sapo (WAF_10) specific reference time: 2014-2018
Timor Leste (PAC_01) specific reference time: 2014-2018
WAPOK (WAF_04) specific reference time: 2015-2019
Yangambi (CAF_99) specific reference time: 2014-2018
DOI: 10.17632/bnzf7z9dcm
title: Potato lectin sensitized spherical and anisotropic silver nanoparticles for simple spectrophotometric determination of the sensitivity of bacteria to antibiotics.

description: A simple photometric approach for estimating the sensitivity of bacteria to antibiotics was developed. The optical properties of potato lectin sensitized spherical and anisotropic silver nanoparticles are drastically changed as a result of their interaction with Gram-positive or Gram-negative bacteria, whereas antibiotic-treated bacteria substantially lose their ability to bind with such nanoparticles because they disturb their surface properties. As a result, the optical properties of nanoparticles are not significantly changed. The extent of such changes depends on the efficacy of antibiotics. Anisotropic silver nanoparticles demonstrate greater assay sensitivity in comparison to spherical nanoparticles. This approach can be applied to the assay of bacterial sensitivity to antibiotics in urine tract infections
DOI: 10.17632/bnzf7z9dcm.1
title: Potato lectin sensitized spherical and anisotropic silver nanoparticles for simple spectrophotometric determination of the sensitivity of bacteria to antibiotics.

description: A simple photometric approach for estimating the sensitivity of bacteria to antibiotics was developed. The optical properties of potato lectin sensitized spherical and anisotropic silver nanoparticles are drastically changed as a result of their interaction with Gram-positive or Gram-negative bacteria, whereas antibiotic-treated bacteria substantially lose their ability to bind with such nanoparticles because they disturb their surface properties. As a result, the optical properties of nanoparticles are not significantly changed. The extent of such changes depends on the efficacy of antibiotics. Anisotropic silver nanoparticles demonstrate greater assay sensitivity in comparison to spherical nanoparticles. This approach can be applied to the assay of bacterial sensitivity to antibiotics in urine tract infections
DOI: 10.15468/dl.gj8gk2
title: Occurrence Download

description: A dataset containing 387 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centaurea melitensis",
 "Country is Mexico",
 "HasCoordinate is true"
 ]
}

 The dataset includes 387 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028883-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6s97ya
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-24.38935 66.53675,-24.2604 64.3351,-21.63309 64.57366,-21.16842 66.20783,-22.02115 66.54183,-24.38935 66.53675))",
 "HasCoordinate is true",
 "TaxonKey is Dactylorhiza maculata",
 "Year 2023-2025"
 ]
}

 The dataset includes 53 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028882-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16322756
title: Analysis of associations between cancer driver mutations and PPI neighbours
title: When neighbours play a role: a systems-level analysis of protein interactions conditioning cancer driver mutation effects

description: Data files necessary to reproduce the analysis of associations between cancer driver mutation status and its protein physical interactors. Original research article available at: https://www.biorxiv.org/content/10.1101/2025.01.18.633728v1

Code for the analysis is available at: https://github.com/GamaPintoLab/driver_neighbours. Clone the code repository and extract the data folder to the directory's root.

Raw data files were retrieved from the TCGA Pan Cancer cohort through the UCSC Xena online tool (https://pancanatlas.xenahubs.net):



gene expression RNAseq—Batch effects normalized mRNA data: EB++AdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.xena

phenotype—Curated clinical data: Survival_SupplementalTable_S1_20171025_xena_sp

phenotype—sample type and primary disease: TCGA_phenotype_denseDataOnlyDownload.tsv

somatic mutation (SNP and INDEL): mc3.v0.2.8.PUBLIC.xena

somatic mutation (SNP and INDEL)—Gene level non-silent mutation: mc3.v0.2.8.PUBLIC.nonsilentGene.xena


Protein-protein interaction data:



HuRI (Version HI-III-22): http://www.interactome-atlas.org/

APID (August 2024): http://apid.dep.usal.es:8080/APID/init.action

STRING (Version 12.0): https://string-db.org/

BioGRID (Release 4.4.225): https://thebiogrid.org/


Cancer driver genes from the Network of Cancer Genes and Heathy Drivers (NCG7.0): http://network-cancer-genes.org/ 

Consensus RNA data from The Human Protein Atlas (version 24.0): https://www.proteinatlas.org/humanproteome/tissue/data#consensus_tissues_rna

The opentargets folder contains files from the Open Targets Platform (Version 24.09): (https://platform.opentargets.org/)

Additionally, we also include a processed folder, which includes all generated files required to reproduce the figures in the mentioned article, without the necessity of running all the provided code.
DOI: 10.17632/c9dhnt2m6r
title: Can government-guided funds promote innovation in strategic emerging enterprises? Evidence from China

description: This study employs an observational dataset of 9,138 strategic emerging businesses listed on China's A-share market from 2010 to 2023 to investigate the influence of government-guided funding (GGF) on innovation in these enterprises and its moderating effects.
DOI: 10.17632/c9dhnt2m6r.1
title: Can government-guided funds promote innovation in strategic emerging enterprises? Evidence from China

description: This study employs an observational dataset of 9,138 strategic emerging businesses listed on China's A-share market from 2010 to 2023 to investigate the influence of government-guided funding (GGF) on innovation in these enterprises and its moderating effects.
DOI: 10.15468/dl.qa5frk
title: Occurrence Download

description: A dataset containing 11827 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cylindropuntia echinocarpa"
 ]
}

 The dataset includes 11827 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028880-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5eurj3
title: Occurrence Download

description: A dataset containing 8614 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centaurea melitensis",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8614 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028884-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pe7pej
title: Occurrence Download

description: A dataset containing 159 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Macroinvertebrate groups found on deep-sea volcanic habitats in the Galapagos Marine Reserve in the Eastern Tropical Pacific Ocean: Echinoderms"
 ]
}

 The dataset includes 159 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028885-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yzjae8
title: Occurrence Download

description: A dataset containing 149 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cotula australis",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 149 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028886-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zbyjjv
title: Occurrence Download

description: A dataset listing the 493 species recorded in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON(((-75.43093 4.83592,-75.42978 4.83465,-75.42727 4.83719,-75.43281 4.84053,-75.43401 4.84277,-75.43287 4.84321,-75.43604 4.84735,-75.43905 4.84732,-75.44004 4.8462,-75.43742 4.83897,-75.43093 4.83592)),((-75.54268 4.93956,-75.53745 4.94534,-75.53621 4.95364,-75.53967 4.94939,-75.54268 4.93956)),((-75.43804 4.92771,-75.43881 4.9226,-75.44116 4.92185,-75.44089 4.92018,-75.44743 4.92318,-75.4482 4.92059,-75.45425 4.91768,-75.45197 4.91721,-75.43797 4.90018,-75.43503 4.89988,-75.43452 4.89604,-75.43657 4.89383,-75.42929 4.89024,-75.41932 4.88993,-75.41209 4.88597,-75.4135 4.88259,-75.42023 4.87999,-75.42167 4.87755,-75.40774 4.87997,-75.40177 4.87886,-75.39533 4.87403,-75.39188 4.87365,-75.39157 4.86861,-75.38654 4.87189,-75.39025 4.87086,-75.38933 4.87349,-75.39131 4.8751,-75.40253 4.88074,-75.3969 4.88076,-75.39393 4.88428,-75.39253 4.88271,-75.3887 4.88355,-75.37661 4.88017,-75.37373 4.88239,-75.36969 4.88076,-75.37038 4.88475,-75.37423 4.8864,-75.37588 4.89096,-75.38736 4.89606,-75.38714 4.89767,-75.38504 4.89824,-75.38657 4.90183,-75.38324 4.9025,-75.38254 4.90534,-75.3797 4.90714,-75.38304 4.90901,-75.38174 4.91037,-75.38548 4.91418,-75.37926 4.9144,-75.37853 4.91645,-75.37664 4.9167,-75.38377 4.92113,-75.38109 4.92189,-75.38213 4.92417,-75.38099 4.92736,-75.38533 4.92653,-75.38146 4.93182,-75.37754 4.93124,-75.37658 4.93388,-75.37232 4.93179,-75.37333 4.93538,-75.37042 4.9375,-75.36073 4.93863,-75.36401 4.93956,-75.36435 4.9429,-75.37065 4.94321,-75.37585 4.94113,-75.37424 4.94405,-75.37725 4.94434,-75.38314 4.9412,-75.38287 4.94476,-75.39266 4.94297,-75.39199 4.94473,-75.39503 4.94842,-75.40035 4.94907,-75.40136 4.94885,-75.3939 4.94466,-75.39417 4.94055,-75.39958 4.94294,-75.40279 4.9393,-75.40627 4.94036,-75.4069 4.93749,-75.40107 4.93847,-75.39897 4.9366,-75.39831 4.92861,-75.40972 4.9283,-75.41794 4.92315,-75.42211 4.92278,-75.43804 4.92771)))"
 ]
}

 The dataset's 493 records were derived from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028865-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/2yn7dyjymk.1
title: Characterization of Copper- and Bronze-Filled PLA: Mechanical, Structural, and Biological Insights for Biomedical 3D and 4D Printing

description: Statistics of mechanical tests of PLA-copper and PLA-bronze composites, along with the images captured using scanning electron microscopy.
DOI: 10.15468/dl.u263br
title: Occurrence Download

description: A dataset listing the 85 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "Geometry POLYGON((-73.3763098492119 10.468664896731084,-73.3763098492119 10.433994968235893,-73.27806835785694 10.433994968235893,-73.27806835785694 10.468664896731084,-73.3763098492119 10.468664896731084))"
 ]
}

 The dataset's 85 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028861-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.