cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6546491
title: Dataset for Dynamic Analysis of Quantum Annealing Programs

description: Quantum software engineering is emerging as a relevant field as it deals with the challenges of producing the new quantum software, whose adoption is increasing progressively. One of those challenges is how quantum software is migrated, how it operates in combination with classical software, or how it should be maintained. In this context this research focuses on reverse engineering of quantum annealing software to facilitates its integration in hybrid software systems. Quantum annealing software has gained a certain market penetration, demonstrating a good performance for optimization problems. While there are some preliminary reverse engineering techniques for gate-based quantum software, there is no reverse engineering techniques to discover the underlying optimization problem definitions (Hamiltonians functions to be minimized). Problem definitions are, in turn, dynamically defined through classical software, and can evolve over time, which make it difficult its accurate comprehension and abstract representation. Thereby, this paper presents a dynamic analysis technique for D-Wave (python) programs for reversing Hamiltonians expressions, that are additionally represented according to the Knowledge Discovery Metamodel. Due to the usage of this standard, the reversed Hamiltonians can be represented in combination with other parts of classical-quantum software systems. In order to facilitates its adoption, the proposed technique has been empirically validated through a case study with 27 D-Wave programs that demonstrates the effectiveness and efficiency. This dataset includes measures derived from that case study.
DOI: 10.6084/m9.figshare.19771102
title: IO-NA warming chain

description: This model simulation with observed and climatological Indian ocean SST (annual mean data)
DOI: 10.6084/m9.figshare.19771102.v1
title: IO-NA warming chain

description: This model simulation with observed and climatological Indian ocean SST (annual mean data)
DOI: 10.5281/zenodo.5712349
title: Does Coding in Pythonic Zen Peak Performance? Preliminary Experiments of Nine Pythonic Idioms at Scale

description: <strong>Link to pre-print: </strong>https://arxiv.org/abs/2203.14484<br> <br> <strong>How to run</strong> Extract <strong>pythonnic_performance.zip </strong>and move into the extracted directory. Execute <strong>install.sh</strong> to install required dependencies. Execute <strong>run.sh </strong>to start the experiment. Execute <strong>python statistic.py </strong>to perform the statistical test and show data statistics. Note that files in <strong>submitted_output</strong> are our experimental results shown in the paper. <br> <strong>Abstract</strong> In field of data science, and for academics in general, the Python programming language is a popular choice, mainly because of its libraries for storing, manipulating, and gaining insight from data.<br> Evidence includes the versatile set of machine learning, data visualization, and manipulation packages used for the ever-growing size of available data.<br> The <em>Zen of Python</em> is a set of guiding design principles that developers use to write acceptable and elegant Python code.<br> Most principles revolve around simplicity.<br> However, as the need to compute on large amounts of data, performance has become a necessity for the Python programmer. The new idea in this paper is to empirically confirm whether writing the Pythonic way peaks performance at scale.<br> As a starting point, we conduct a set of preliminary experiments to evaluate nine Pythonic code examples by comparing the performance of both Pythonic and Non-Pythonic code snippets.<br> Our results reveal that writing in Pythonic idioms may save memory and time.<br> We show that incorporating list comprehension, generator expression, zip, and itertools.zip\_longest can save up to 7,000 MB and 32.25 seconds.<br> The results open more questions on how they could be utilized in a real-world setting.
DOI: 10.5281/zenodo.5712348
title: Does Coding in Pythonic Zen Peak Performance? Preliminary Experiments of Nine Pythonic Idioms at Scale

description: <strong>Link to pre-print: </strong>https://arxiv.org/abs/2203.14484<br> <br> <strong>How to run</strong> Extract <strong>pythonnic_performance.zip </strong>and move into the extracted directory. Execute <strong>install.sh</strong> to install required dependencies. Execute <strong>run.sh </strong>to start the experiment. Execute <strong>python statistic.py </strong>to perform the statistical test and show data statistics. Note that files in <strong>submitted_output</strong> are our experimental results shown in the paper. <br> <strong>Abstract</strong> In field of data science, and for academics in general, the Python programming language is a popular choice, mainly because of its libraries for storing, manipulating, and gaining insight from data.<br> Evidence includes the versatile set of machine learning, data visualization, and manipulation packages used for the ever-growing size of available data.<br> The <em>Zen of Python</em> is a set of guiding design principles that developers use to write acceptable and elegant Python code.<br> Most principles revolve around simplicity.<br> However, as the need to compute on large amounts of data, performance has become a necessity for the Python programmer. The new idea in this paper is to empirically confirm whether writing the Pythonic way peaks performance at scale.<br> As a starting point, we conduct a set of preliminary experiments to evaluate nine Pythonic code examples by comparing the performance of both Pythonic and Non-Pythonic code snippets.<br> Our results reveal that writing in Pythonic idioms may save memory and time.<br> We show that incorporating list comprehension, generator expression, zip, and itertools.zip\_longest can save up to 7,000 MB and 32.25 seconds.<br> The results open more questions on how they could be utilized in a real-world setting.
DOI: 10.6084/m9.figshare.19723405
title: pastclim_beyer2020_v1.0.0

description: Climate reconstructions for the last 120k years from Beyer et al 2020, with icesheets and internal seas masked. To be used in pastclim.
DOI: 10.6084/m9.figshare.19771150
title: IO-NA_warming_chain_codes

description: This include codes for creating figures
DOI: 10.6084/m9.figshare.19733680
title: pastclim_krapp2021_v1.0.0

description: Climate reconstructions for the last 800k years from Krapp et al 2021, with icesheets and internal seas masked. To be used in pastclim.
DOI: 10.5281/zenodo.6552390
title: Novel role of TRPM4 ion channel in exocytosis

description: Under physiological conditions, the widely expressed calcium-activated TRPM4 channel conducts sodium into the cell. This sodium influx depolarizes the plasma membrane and reduces the driving force for calcium entry. Aberrant expression or function of TRPM4 has been reported in various diseases, including different types of cancer. TRPM4 is localized mainly in the plasma membrane, but is also found in intracellular vesicles, which can undergo exocytosis. In this study, we show that calcium-induced exocytosis in the colorectal cancer cell line HCT116 is dependent on TRPM4. In addition, findings from prostate cancer cell lines point to a more general role for TRPM4 in calcium-induced exocytosis in cancer cells. Furthermore, calcium-induced exocytosis depends on TRPM4 ion conductivity. Additionally, an increase in intracellular calcium results in the delivery of TRPM4 to the plasma membrane. This process also depends on TRPM4 ion conductivity. TRPM4-dependent exocytosis and delivery of TRPM4 to the plasma membrane is mediated by SNARE proteins. Finally, we provide evidence that calcium-induced exocytosis depends on TRPM4 ion conductivity not within the plasma membrane, but rather in TRPM4-containing vesicles.
DOI: 10.5281/zenodo.6552389
title: Novel role of TRPM4 ion channel in exocytosis

description: Under physiological conditions, the widely expressed calcium-activated TRPM4 channel conducts sodium into the cell. This sodium influx depolarizes the plasma membrane and reduces the driving force for calcium entry. Aberrant expression or function of TRPM4 has been reported in various diseases, including different types of cancer. TRPM4 is localized mainly in the plasma membrane, but is also found in intracellular vesicles, which can undergo exocytosis. In this study, we show that calcium-induced exocytosis in the colorectal cancer cell line HCT116 is dependent on TRPM4. In addition, findings from prostate cancer cell lines point to a more general role for TRPM4 in calcium-induced exocytosis in cancer cells. Furthermore, calcium-induced exocytosis depends on TRPM4 ion conductivity. Additionally, an increase in intracellular calcium results in the delivery of TRPM4 to the plasma membrane. This process also depends on TRPM4 ion conductivity. TRPM4-dependent exocytosis and delivery of TRPM4 to the plasma membrane is mediated by SNARE proteins. Finally, we provide evidence that calcium-induced exocytosis depends on TRPM4 ion conductivity not within the plasma membrane, but rather in TRPM4-containing vesicles.
DOI: 10.6084/m9.figshare.18737369.v2
title: Analysis code and data - Differences in social network structure and implications for reproductive isolation in a pair of stickleback ecotypes

description: Data for "Differences in social network structure and implications for reproductive isolation in a pair of stickleback ecotypes"
DOI: 10.6084/m9.figshare.18737369.v3
title: Analysis code and data - Differences in social network structure and implications for reproductive isolation in a pair of stickleback ecotypes

description: Data for "Differences in social network structure and implications for reproductive isolation in a pair of stickleback ecotypes"
DOI: 10.25413/sun.16825546
title: Screening - growth

description: These datasets display monoculture and mixed culture growth of isolates screened in SGM - both yeast <i>S. cerevisiaei </i>and bacteria <i>Lb. plantarum</i>. Sequential screens were also performed.
DOI: 10.25413/sun.16825546.v1
title: Screening - growth

description: These datasets display monoculture and mixed culture growth of isolates screened in SGM - both yeast <i>S. cerevisiaei </i>and bacteria <i>Lb. plantarum</i>. Sequential screens were also performed.
DOI: 10.25413/sun.16825567
title: CytoFLEX validation

description: Yeast and bacteria in monoculture and mixed culture were used to validate the CytoFLEX instrument (flow cytometer) for cell enumeration. Other media tests are also in the excel file, but were not relevant to the study and can be ignored. The data was compared on the flow cytometer versus on agar plates - the sheets "CytoFLEX vs plates" indicate graphs for either yeast or bacteria growth.
DOI: 10.25413/sun.16825567.v1
title: CytoFLEX validation

description: Yeast and bacteria in monoculture and mixed culture were used to validate the CytoFLEX instrument (flow cytometer) for cell enumeration. Other media tests are also in the excel file, but were not relevant to the study and can be ignored. The data was compared on the flow cytometer versus on agar plates - the sheets "CytoFLEX vs plates" indicate graphs for either yeast or bacteria growth.
DOI: 10.25413/sun.16917610
title: SKM pH experiment monocultures

description: The growth of three different microalgae Chlorella sorokiniana isolates (PA-parental microalgae, A100.2 and A100.3-microalgae co-evolved for 100 generations in a previous study (Naidoo et al., 2019; Oosthuizen, 2020) at three different pH values (5.0, 6.0 and 7.0).
DOI: 10.25413/sun.16917610.v1
title: SKM pH experiment monocultures

description: The growth of three different microalgae Chlorella sorokiniana isolates (PA-parental microalgae, A100.2 and A100.3-microalgae co-evolved for 100 generations in a previous study (Naidoo et al., 2019; Oosthuizen, 2020) at three different pH values (5.0, 6.0 and 7.0).
DOI: 10.25413/sun.16917628
title: SKM Microalgae growth in wastewater (monoculture and co-cultures)

description: Growth (cells/mL) of microalgae Chlorella sorokiniana over 5 days in pre-treated (centrifuged and wastewater thermovinified for 10 minutes at 80 degrees celsius) winery wastewater with (co-culture tab) and without (monoculture tab) yeast Saccharomyces cerevisiae. Different isolates of microalgae and yeast were included.
DOI: 10.5281/zenodo.5550927
title: Fraktionsprotokolle.de - PDF data package

description: 1. Inhalt: Das PDF-Datenpaket zur Edition »Fraktionen im Deutschen Bundestag. Sitzungsprotokolle 1949-2005« der KGParl enthält alle bearbeiteten und veröffentlichten Protokolle aus der Edition. Version 1 des Datenpakets enthält alle die Edition konstituierenden PDF-Dateien der bisherigen PDF-basierten (und veralteten) Edition. Die Ordner im Paket sind nach Wahlperioden (WP 01 bis WP 11 derzeit) geordnet. Innerhalb jeder Wahlperiode dann nach Fraktionen. Jedes Sitzungsprotokoll umfasst genau eine PDF-Datei. (Dieses Datenpakt ist nicht für die öffentliche Nutzung gedacht. Interessierte Nutzerinnen und Nutzer wenden sich bitte an fraktionsprotokolle.de.) Nach der Umstellung auf XML (Ende 2021) werden alle weiteren Versionen des Datenpakets in Zukunft im TEI-XML-Format erstellt. Die jeweils aktuellen XML-Dateien zu den Protokollen erhalten Sie über das Github-Repositorium der Edition: https://github.com/Fraktionsprotokolle-de/fraktionsprotokolle_web Aktualisierte Versionen des Datenpakets werden (ab Mitte Februar 2022) automatisch über Zenodo.org archiviert, sobald bei Github ein neues Release erscheint. Vgl. bspw: https://zenodo.org/record/6552509 2. Kontakt: Edition »Fraktionen im Deutschen Bundestag. Sitzungsprotokolle 1949-2005«<br> c/o Kommission für Geschichte des Parlamentarismus und der politischen Parteien e. V<br> Schiffbauerdamm 40<br> D-10117 Berlin<br> info at fraktionsprotokolle.de 3. DOI: 10.5281/zenodo.4817912
description: Zwei fehlende Sitzungsprotokolle wurden dem Datenpaket hinzugefügt.
DOI: 10.5281/zenodo.4817911
title: Fraktionsprotokolle.de - PDF data package

description: 1. Inhalt: Das PDF-Datenpaket zur Edition »Fraktionen im Deutschen Bundestag. Sitzungsprotokolle 1949-2005« der KGParl enthält alle bearbeiteten und veröffentlichten Protokolle aus der Edition. Version 1 des Datenpakets enthält alle die Edition konstituierenden PDF-Dateien der bisherigen PDF-basierten (und veralteten) Edition. Die Ordner im Paket sind nach Wahlperioden (WP 01 bis WP 11 derzeit) geordnet. Innerhalb jeder Wahlperiode dann nach Fraktionen. Jedes Sitzungsprotokoll umfasst genau eine PDF-Datei. (Dieses Datenpakt ist nicht für die öffentliche Nutzung gedacht. Interessierte Nutzerinnen und Nutzer wenden sich bitte an fraktionsprotokolle.de.) Nach der Umstellung auf XML (Ende 2021) werden alle weiteren Versionen des Datenpakets in Zukunft im TEI-XML-Format erstellt. Die jeweils aktuellen XML-Dateien zu den Protokollen erhalten Sie über das Github-Repositorium der Edition: https://github.com/Fraktionsprotokolle-de/fraktionsprotokolle_web Aktualisierte Versionen des Datenpakets werden (ab Mitte Februar 2022) automatisch über Zenodo.org archiviert, sobald bei Github ein neues Release erscheint. Vgl. bspw: https://zenodo.org/record/6552509 2. Kontakt: Edition »Fraktionen im Deutschen Bundestag. Sitzungsprotokolle 1949-2005«<br> c/o Kommission für Geschichte des Parlamentarismus und der politischen Parteien e. V<br> Schiffbauerdamm 40<br> D-10117 Berlin<br> info at fraktionsprotokolle.de 3. DOI: 10.5281/zenodo.4817912
description: Zwei fehlende Sitzungsprotokolle wurden dem Datenpaket hinzugefügt.
DOI: 10.25413/sun.16995085
title: SKM Low light intensity vs higher light intensity experiment

description: The growth of microalgae, Chlorella sorokiniana, is assessed at two different light intensities, namely, 95 and 150 photons umol.m2.s-1 in monocultures in synthetic TAP media for one week. Temperature, pH and loss of weight as CO2 are also quantified.
DOI: 10.25413/sun.16995085.v1
title: SKM Low light intensity vs higher light intensity experiment

description: The growth of microalgae, Chlorella sorokiniana, is assessed at two different light intensities, namely, 95 and 150 photons umol.m2.s-1 in monocultures in synthetic TAP media for one week. Temperature, pH and loss of weight as CO2 are also quantified.
DOI: 10.25413/sun.16995100
title: SKM Standard curves of dry and wet microalgae biomass

description: To be able to accurately infer biomass of microalgae Chlorella sorokiniana in monocultures using OD, standard curves of OD at 750 nm versus dry or wet biomass were generated.
DOI: 10.25413/sun.16995100.v1
title: SKM Standard curves of dry and wet microalgae biomass

description: To be able to accurately infer biomass of microalgae Chlorella sorokiniana in monocultures using OD, standard curves of OD at 750 nm versus dry or wet biomass were generated.
DOI: 10.25413/sun.16995106.v1
title: SKM Elemental analyses of major and minor trace elements in winery wastewater on day 0 and 5 inoculated with microalgae or microalgae and yeast.

description: Elemental analyses of winery wastewater after microalgae cultivation in monoculture or co-culture with yeast for 5 days. Elements analysed include Na, K, Ca, Mg, B, Ba, Sr, P, Si, Al, Cr, Mn, Fe, Co, Ni, Cu, Zn, As, Se, Sb, Mo, Cd, Pb, Hg. Analyses were done at CAF at Stellenbosch University<br>
DOI: 10.25413/sun.16995106
title: SKM Elemental analyses of major and minor trace elements in winery wastewater on day 0 and 5 inoculated with microalgae or microalgae and yeast.

description: Elemental analyses of winery wastewater after microalgae cultivation in monoculture or co-culture with yeast for 5 days. Elements analysed include Na, K, Ca, Mg, B, Ba, Sr, P, Si, Al, Cr, Mn, Fe, Co, Ni, Cu, Zn, As, Se, Sb, Mo, Cd, Pb, Hg. Analyses were done at CAF at Stellenbosch University<br>
DOI: 10.25413/sun.16995112
title: SKM Comparison of different yeast strains as CO2 provider for microalgae growth

description: Growth of microalgae Chlorella sorokiniana in Tris-Acetate-Phosphate medium for 7 days receiving CO2 from either winery wastewater isolates Saccharomyces cerevisiae or VIN13.
DOI: 10.25413/sun.16995121
title: SKM Evaluation of co-evolved microalgae isolate compared to parental or wild-type in co-culture, pH and RNA concentrations

description: Growth of microalgae Chlorella sorokiniana and yeast Saccharomyces cerevisiae in Tris-Acetate-Phosphate medium with 2% glucose and 20 mM nitrite for 5 days receiving CO2 from either winery wastewater isolates Saccharomyces cerevisiae. pH of the media and RNA concentrations of RNA samples used for primer efficiency optimisation are included.
DOI: 10.25413/sun.16995121.v1
title: SKM Evaluation of co-evolved microalgae isolate compared to parental or wild-type in co-culture, pH and RNA concentrations

description: Growth of microalgae Chlorella sorokiniana and yeast Saccharomyces cerevisiae in Tris-Acetate-Phosphate medium with 2% glucose and 20 mM nitrite for 5 days receiving CO2 from either winery wastewater isolates Saccharomyces cerevisiae. pH of the media and RNA concentrations of RNA samples used for primer efficiency optimisation are included.
DOI: 10.25413/sun.16995130
title: SKM Evaluation of co-evolved microalgae isolates compared to parental or wild-type in monoculture

description: Growth (as OD at 750 nm and biomass in g/L) of microalgae Chlorella sorokiniana in Tris-Acetate-Phosphate medium with no C source and 20 mM ammonium for 5 days receiving CO2 from winery wastewater isolates Saccharomyces cerevisiae. pH of the media, weight loss as CO2, temperatures and glucose concentrations of yeast media feeding CO2 are included.
DOI: 10.25413/sun.16995130.v1
title: SKM Evaluation of co-evolved microalgae isolates compared to parental or wild-type in monoculture

description: Growth (as OD at 750 nm and biomass in g/L) of microalgae Chlorella sorokiniana in Tris-Acetate-Phosphate medium with no C source and 20 mM ammonium for 5 days receiving CO2 from winery wastewater isolates Saccharomyces cerevisiae. pH of the media, weight loss as CO2, temperatures and glucose concentrations of yeast media feeding CO2 are included.
DOI: 10.5281/zenodo.6552304
title: Cross-modal correspondences: different modes, common codes? Investigating musical engagement with an Ecological cognitive approach

description: This folder refers to my thesis entitled "Crossmodal correspondences: different modes, common codes? Investigating musical engagement with an Ecological cognitive approach."
DOI: 10.5281/zenodo.6552256
title: Cross-modal correspondences: different modes, common codes? Investigating musical engagement with an Ecological cognitive approach

description: This folder refers to my thesis entitled "Crossmodal correspondences: different modes, common codes? Investigating musical engagement with an Ecological cognitive approach."
DOI: 10.25413/sun.16995142
title: SKM Evaluation of parental microalgae isolate receiving CO2 compared to parental not receiving CO2 in monoculture

description: Growth of microalgae Chlorella sorokiniana in Tris-Acetate-Phosphate medium with no C source and 20 mM ammonium for 7 days receiving CO2 from winery wastewater isolates Saccharomyces cerevisiae or not receiving CO2.
DOI: 10.25413/sun.16995142.v1
title: SKM Evaluation of parental microalgae isolate receiving CO2 compared to parental not receiving CO2 in monoculture

description: Growth of microalgae Chlorella sorokiniana in Tris-Acetate-Phosphate medium with no C source and 20 mM ammonium for 7 days receiving CO2 from winery wastewater isolates Saccharomyces cerevisiae or not receiving CO2.
DOI: 10.25442/hku.19755157
title: Data for the manuscript ''New Insights on the Missing Link between Giant and Miniature Submarine Debris Flows''

description: Submarine debris flows occur under the cloak of the sea and are considered giants among the other types of landslides on planet Earth. In this study, we revisit the library of field and experimental data in the literature to systematically investigate the missing links between field and experimental submarine debris flows. <br> Unique database of dimensional analysis from the library of field and laboratory data of submarine debris flows in the literature. There are two groups of parameters summarized, one is the basic parameters that are directly collected from the literature, and another is the dimensionless numbers calculated using dimensional analysis from this study.
DOI: 10.25442/hku.19755157.v1
title: Data for the manuscript ''New Insights on the Missing Link between Giant and Miniature Submarine Debris Flows''

description: Submarine debris flows occur under the cloak of the sea and are considered giants among the other types of landslides on planet Earth. In this study, we revisit the library of field and experimental data in the literature to systematically investigate the missing links between field and experimental submarine debris flows. <br> Unique database of dimensional analysis from the library of field and laboratory data of submarine debris flows in the literature. There are two groups of parameters summarized, one is the basic parameters that are directly collected from the literature, and another is the dimensionless numbers calculated using dimensional analysis from this study.