cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16847731
title: Nicotine has a therapeutic window of effectiveness in a Drosophila melanogaster model of Parkinson’s disease

description: This is the raw data supporting the publication: Brady T. Mannett, Braden C. Capt, Krista Pearman, Lori M. Buhlman, John M. VandenBrooks, Gerald B. Call, "Nicotine Has a Therapeutic Window of Effectiveness in a <em>Drosophila melanogaster</em> Model of Parkinson’s Disease", <em>Parkinson’s Disease</em>, vol. 2022, Article ID 9291077, 11 pages, 2022. https://doi.org/10.1155/2022/9291077 Which was available as a preprint at https://doi.org/10.21203/rs.3.rs-944131/v1.
DOI: 10.6084/m9.figshare.16847731.v1
title: Nicotine has a therapeutic window of effectiveness in a Drosophila melanogaster model of Parkinson’s disease

description: This is the raw data supporting the publication: Brady T. Mannett, Braden C. Capt, Krista Pearman, Lori M. Buhlman, John M. VandenBrooks, Gerald B. Call, "Nicotine Has a Therapeutic Window of Effectiveness in a <em>Drosophila melanogaster</em> Model of Parkinson’s Disease", <em>Parkinson’s Disease</em>, vol. 2022, Article ID 9291077, 11 pages, 2022. https://doi.org/10.1155/2022/9291077 Which was available as a preprint at https://doi.org/10.21203/rs.3.rs-944131/v1.
DOI: 10.6084/m9.figshare.20051638
title: Permutation Tests at Nonparametric Rates

description: Classical two-sample permutation tests for equality of distributions have exact size in finite samples, but they fail to control size for testing equality of parameters that summarize each distribution. This article proposes permutation tests for equality of parameters that are estimated at root-<i>n</i> or slower rates. Our general framework applies to both parametric and nonparametric models, with two samples or one sample split into two subsamples. Our tests have correct size asymptotically while preserving exact size in finite samples when distributions are equal. They have no loss in local asymptotic power compared to tests that use asymptotic critical values. We propose confidence sets with correct coverage in large samples that also have exact coverage in finite samples if distributions are equal up to a transformation. We apply our theory to four commonly-used hypothesis tests of nonparametric functions evaluated at a point. Lastly, simulations show good finite sample properties, and two empirical examples illustrate our tests in practice. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.20051638.v2
title: Permutation Tests at Nonparametric Rates

description: Classical two-sample permutation tests for equality of distributions have exact size in finite samples, but they fail to control size for testing equality of parameters that summarize each distribution. This article proposes permutation tests for equality of parameters that are estimated at root-<i>n</i> or slower rates. Our general framework applies to both parametric and nonparametric models, with two samples or one sample split into two subsamples. Our tests have correct size asymptotically while preserving exact size in finite samples when distributions are equal. They have no loss in local asymptotic power compared to tests that use asymptotic critical values. We propose confidence sets with correct coverage in large samples that also have exact coverage in finite samples if distributions are equal up to a transformation. We apply our theory to four commonly-used hypothesis tests of nonparametric functions evaluated at a point. Lastly, simulations show good finite sample properties, and two empirical examples illustrate our tests in practice. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.20051638.v1
title: Permutation Tests at Nonparametric Rates

description: Classical two-sample permutation tests for equality of distributions have exact size in finite samples, but they fail to control size for testing equality of parameters that summarize each distribution. This paper proposes permutation tests for equality of parameters that are estimated at root-<i>n</i> or slower rates. Our general framework applies to both parametric and nonparametric models, with two samples or one sample split into two subsamples. Our tests have correct size asymptotically while preserving exact size in finite samples when distributions are equal. They have no loss in local asymptotic power compared to tests that use asymptotic critical values. We propose confidence sets with correct coverage in large samples that also have exact coverage in finite samples if distributions are equal up to a transformation. We apply our theory to four commonly-used hypothesis tests of nonparametric functions evaluated at a point. Lastly, simulations show good finite sample properties, and two empirical examples illustrate our tests in practice.
DOI: 10.5066/p9471rmc
title: Mesocarnivore Survey of Oregon Caves National Monument and Preserve, Klamath Network, 2017 (ver. 2.1, July 2022)

description: Remote camera stations were set up in Oregon Caves National Monument and Preserve from February through April 2017 to document occurrence of mesocarnivores and other wildlife. Fifteen cameras were set up at four primary sampling units (clusters of three to four cameras) throughout the park. Random locations for primary sampling units were chosen using a 3-km sampling grid over the park area. The dataset contains all species observed within the study time-frame, the date and time of observation and the number of individuals detected as well as identification for individual locations, cameras and images. Of the three target species of conservation concern (Pacific fisher (Pekania pennanti), Pacific marten (Martes caurina), Sierra Nevada red fox (Vulpes vulpes necator)) were seen, only Pacific fisher were detected.
DOI: 10.3886/e174948v1
title: Special Education Eligibility Criteria and Professional Certification Requirements in the United States Related to Students with Visual Impairments and Deafblindness

description: The Individuals with Disabilities Education Act (IDEA, 2004) established federal definitions for 14 disability categories under which students may be found eligible for special education services in the United States. Although states must abide by this federal law that broadly defines each disability category, states may also develop their own unique definitions and eligibility criteria to identify students. In addition, states have flexibility in determining the requirements for professional licensure for the educators and professionals who work with students with disabilities. <br><br>For this project, we reviewed state regulatory and policy documents to explore the variability in eligibility requirements for students with sensory impairments (i.e., visual impairment, including blindness; hearing impairment; deafness; deafblindness) and licensure requirements for professionals who work with students with visual impairments, teachers of the visually impaired (TVIs) and orientation & mobility (O&M) specialists across the US. Specifically, these data represent a state-by-state (including Washington DC and US territories (American Samoa, Guam, Northern Mariana Islands, Puerto Rico, and the US Virgin Islands)) snapshot of variability in eligibility and licensure requirements. <br><br>Data for this project were collected between January and October 2021. At the time data were collected, measures were taken to ensure reliability (i.e., high inter-rater agreement across states and variables). However, changes in state regulations or policy documents may impact the accuracy of the data at the time of download. Individuals using this data set to locate information for a specific state should consult the state’s most up-to-date documents. <br><br><br>
description: Students with visual impairments; Students with Deafblindness; Teachers of Students with Visual Impairments; Orientation and Mobility Specialists<br>.
DOI: 10.1184/r1/20280138
title: Solid Waste Management Knowledge Base

description: This knowledge base intends to document SWMS-related knowledge around the world with a focus in the U.S. and EU for the Bee2Waste Crypto project. This knowledge base aims to collect data on waste characterization, waste generation, management practices for solid wastes generated by the public sector (e.g. municipal solid waste (MSW), construction and demolition (C&D) debris, electronic wastes, disaster debris, etc.). Besides, this knowledge base attempts to capture the socioeconomic contexts as well as performance metrics of SWMS, including economic benefits, environmental footprints, and societal impacts.
DOI: 10.1184/r1/20280138.v1
title: Solid Waste Management Knowledge Base

description: This knowledge base intends to document SWMS-related knowledge around the world with a focus in the U.S. and EU for the Bee2Waste Crypto project. This knowledge base aims to collect data on waste characterization, waste generation, management practices for solid wastes generated by the public sector (e.g. municipal solid waste (MSW), construction and demolition (C&D) debris, electronic wastes, disaster debris, etc.). Besides, this knowledge base attempts to capture the socioeconomic contexts as well as performance metrics of SWMS, including economic benefits, environmental footprints, and societal impacts.
DOI: 10.6084/m9.figshare.20073584.v1
title: Heterogeneous Mediation Analysis on Epigenomic PTSD and Traumatic Stress in a Predominantly African American Cohort

description: DNA methylation (DNAm) has been suggested to play a critical role in post-traumatic stress disorder (PTSD), through mediating the relationship between trauma and PTSD. However, this underlying mechanism of PTSD for African Americans still remains unknown. To fill this gap, in this article, we investigate how DNAm mediates the effects of traumatic experiences on PTSD symptoms in the Detroit Neighborhood Health Study (DNHS) (2008–2013) which involves primarily African Americans adults. To achieve this, we develop a new mediation analysis approach for high-dimensional potential DNAm mediators. A key novelty of our method is that we consider heterogeneity in mediation effects across subpopulations. Specifically, mediators in different subpopulations could have opposite effects on the outcome, and thus could be difficult to identify under a traditional homogeneous model framework. In contrast, the proposed method can estimate heterogeneous mediation effects and identifies subpopulations in which individuals share similar effects. Simulation studies demonstrate that the proposed method outperforms existing methods for both homogeneous and heterogeneous data. We also present our mediation analysis results of a dataset with 125 participants and more than 450,000 CpG sites from the DNHS study. The proposed method finds three subgroups of subjects and identifies DNAm mediators corresponding to genes such as <i>HSP90AA1</i> and <i>NFATC1</i> which have been linked to PTSD symptoms in literature. Our finding could be useful in future finer-grained investigation of PTSD mechanism and in the development of new treatments for PTSD. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.20073584
title: Heterogeneous Mediation Analysis on Epigenomic PTSD and Traumatic Stress in a Predominantly African American Cohort

description: DNA methylation (DNAm) has been suggested to play a critical role in post-traumatic stress disorder (PTSD), through mediating the relationship between trauma and PTSD. However, this underlying mechanism of PTSD for African Americans still remains unknown. To fill this gap, in this article, we investigate how DNAm mediates the effects of traumatic experiences on PTSD symptoms in the Detroit Neighborhood Health Study (DNHS) (2008–2013) which involves primarily African Americans adults. To achieve this, we develop a new mediation analysis approach for high-dimensional potential DNAm mediators. A key novelty of our method is that we consider heterogeneity in mediation effects across subpopulations. Specifically, mediators in different subpopulations could have opposite effects on the outcome, and thus could be difficult to identify under a traditional homogeneous model framework. In contrast, the proposed method can estimate heterogeneous mediation effects and identifies subpopulations in which individuals share similar effects. Simulation studies demonstrate that the proposed method outperforms existing methods for both homogeneous and heterogeneous data. We also present our mediation analysis results of a dataset with 125 participants and more than 450,000 CpG sites from the DNHS study. The proposed method finds three subgroups of subjects and identifies DNAm mediators corresponding to genes such as <i>HSP90AA1</i> and <i>NFATC1</i> which have been linked to PTSD symptoms in literature. Our finding could be useful in future finer-grained investigation of PTSD mechanism and in the development of new treatments for PTSD. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.20288586.v1
title: U“QualiAPS-digital, Brazil” Instrument: version 1 ntitled Item

description: The objective of this publication is to present version 1 of the instrument “QualiAPS-digital, Brasil” for the assessment of digital health in Primary Health Care. This instrument, to be submitted to validation, reliability and usefulness analyses, was built from the digital health assessment model in PHC, proposed by Silva and Uchoa (2022a) I was based on 8 international evaluation frameworks ( Silva, Uchoa , 2022 b) identified in Scoping REview already published ( SILVA et al 2022). The instrument integrates the thesis by Renan Cabral de Figueiredo which is part of the project “Evaluation of the quality of Digital Health in Primary Health Care coordinated by researcher Severina Alice da Costa Uchoa from the Department of Public Health at UFRN/Brazil, The project is in progress and it was submitted to the Public Notice/09 /2022 PQ/CNPq/Brazil <br> . <strong>Referencias </strong> SILVA, Cícera Renata Diniz Vieira; DA COSTA UCHOA, Severina Alice (2022): Digital health assessment model in Primary Health Care in Brazil.. figshare. Figure. https://doi.org/10.6084/m9.figshare.20217005.v1 Silva, Cícera Renata Diniz Vieira; DA COSTA UCHOA, Severina Alice (2022)(b) SUMMARY OF DIGITAL HEALTH EVALUATIVE FRAMEWORKS IN THE LITERATURE. figshare. Dataset. https://doi.org/10.6084/m9.figshare.20218172.v1 SILVA, Cícera Renata Diniz Vieira; LOPES, Rayssa Horácio; BAY JUNIOR, Osvaldo de Goes; MARTINIANO, Claudia Santos; FUENTEALBA-TORRES, Miguel; ARCÊNCIO, Ricardo Alexandre; LAPÃO, Luís Velez; DIAS, Sonia; UCHOA, Severina Alice da Costa. Digital Health Opportunities to Improve Primary Health Care in the Context of COVID-19: scoping review. <strong>Jmir Human Factors</strong>, [S.L.], v. 9, n. 2, p. 35380, 2022. doi: 10.2196/35380PMID: 35319466
DOI: 10.5281/zenodo.6819463
title: Simulations of Single Molecule Localization Microscopy frames with scattered single emitters

description: Datasets used in the work "Combining deep learning with SUPPOSe and Compressed Sensing for SNR-enhanced localization of overlapping emitters". The file <strong>Sample dataset.zip</strong> contains simulated images of frames of Single-Molecule Localization Microscopy. In the directory structure, Q is the number of emitters, d is the emitter distance (in pixels), imax is the image maximum intensity and i indexes different noise realizations. There are three images within each folder: <strong>X</strong> is a noiseless image, <strong>Y</strong> is the image with noise and background and <strong>Z</strong> is a denoised image predicted using a convolutional neural network. The file <strong>Train dataset.zip</strong> contains 5000 simulated pairs of images of single emitters distributed randomly that were used to train a convolutional neural network for denoising. The folder <strong>X</strong> contains noiseless images and the folder <strong>Y</strong> contains the corresponding images with noise and background. In all cases, a Gaussian PSF with size \(\sigma = 3\) px was used as the PSF of the imaging system, Noise is modeled as a Poisson process with a dark signal \(i_{dark} = 10\). Corresponding author: Axel M. Lacapmesure (alacapmesure@fi.uba.ar) <strong>CHANGELIST</strong> Version 2: corrected all file extensions in "Train dataset.zip" that were wrong.
DOI: 10.5281/zenodo.5528367
title: Simulations of Single Molecule Localization Microscopy frames with scattered single emitters

description: Datasets used in the work "Combining deep learning with SUPPOSe and Compressed Sensing for SNR-enhanced localization of overlapping emitters". The file <strong>Sample dataset.zip</strong> contains simulated images of frames of Single-Molecule Localization Microscopy. In the directory structure, Q is the number of emitters, d is the emitter distance (in pixels), imax is the image maximum intensity and i indexes different noise realizations. There are three images within each folder: <strong>X</strong> is a noiseless image, <strong>Y</strong> is the image with noise and background and <strong>Z</strong> is a denoised image predicted using a convolutional neural network. The file <strong>Train dataset.zip</strong> contains 5000 simulated pairs of images of single emitters distributed randomly that were used to train a convolutional neural network for denoising. The folder <strong>X</strong> contains noiseless images and the folder <strong>Y</strong> contains the corresponding images with noise and background. In all cases, a Gaussian PSF with size \(\sigma = 3\) px was used as the PSF of the imaging system, Noise is modeled as a Poisson process with a dark signal \(i_{dark} = 10\). Corresponding author: Axel M. Lacapmesure (alacapmesure@fi.uba.ar) <strong>CHANGELIST</strong> Version 2: corrected all file extensions in "Train dataset.zip" that were wrong.
DOI: 10.6073/pasta/4a92a0044bcd1523a4f994ece874a57d
title: California Current Ecosystem Euphausiid data, Brinton and Townsend Euphausiid Database (BTEDB)

description: These euphausiid data are generated from samples taken by the CalCOFI (California Cooperative Oceanic Fisheries Investigations) program, starting with the 1951 cruises. Data are obtained by enumeration of samples by trained microscopists with a high level of taxonomic expertise, beginning with the late Edward Brinton, including Annie Townsend’s assistance starting in the 1970’s, and then by Linsey Sala from 2011 to present. Only a limited subset of the CalCOFI samples have been enumerated taxonomically, primarily from springtime cruises. Since 2004, taxonomic analysis has been carried out as part of the CCE-LTER (California Current Ecosystem Long-Term Ecological Research) program, supported by the U.S. National Science Foundation. The primary geographic area analyzed is the Southern California region (CalCOFI lines 77 to 93, inclusive), supplemented by more limited springtime cruises from the Central California region (lines 60 to 73). Samples are all double oblique samples taken with a bongo net beginning in Dec. 1977 or a ring net prior to that time, nominally from 210-0 m, bottom depth permitting.
DOI: 10.5683/sp2/rktiob
title: Data for Quesnel Lake suspended sediment mass balance, 2014-2020

description: Data required to conduct a mass balance of suspended sediment in Quesnel Lake as described in the methods section of the article titled "Initial distribution and interannual decrease of suspended sediment in a two basin lake following a massive mine tailings spill: Quesnel Lake, BC, Canada".
DOI: 10.6084/m9.figshare.20166209.v1
title: Source data for Primary and metastatic tumors exhibit systems-level differences in dependence on mitochondrial respiratory function

description: The Warburg effect, aerobic glycolysis, is a hallmark feature of cancer cells grown in culture. However, the relative roles of glycolysis and respiratory metabolism in supporting in vivo tumor growth and processes such as tumor dissemination and metastatic growth remain poorly understood, particularly on a systems level. Using a CRISPRi mini-library enriched for mitochondrial ribosomal protein and respiratory chain genes in multiple human lung cancer cell lines we analyzed in vivo metabolic requirements in xenograft tumors grown in distinct anatomic contexts. While knockdown of mitochondrial ribosomal protein and respiratory chain genes (mito-respiratory genes) has little impact on growth in vitro, tumor cells depend heavily on these genes when grown in vivo as either flank or primary orthotopic lung tumor xenografts. In contrast, respiratory function is comparatively dispensable for metastatic tumor growth. RNA-Seq and metabolomics analysis of tumor cells expressing individual sgRNAs against mito-respiratory genes indicate overexpression of glycolytic genes and increased sensitivity of glycolytic inhibition compared to control when grown in vitro, but when grown in vivo as primary tumors these cells downregulate glycolytic mechanisms. These studies demonstrate that discrete perturbations of mitochondrial respiratory chain function impact in vivo tumor growth in a context-specific manner with differential impacts on primary and metastatic tumors.
DOI: 10.6084/m9.figshare.3761562.v2276
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.25505/fiz.icsd.cc1xz2qp
title: CSD 1786583: Experimental Crystal Structure Determination

description: Related Article: Jiliang Zhang, Fazhu Ding, Jey-Jau Lee, Guangcun Shan, Svilen Bobev|2020|Inorg.Chem.|59|16853|doi:10.1021/acs.inorgchem.0c01062
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc25yk5w
title: CSD 2024398: Experimental Crystal Structure Determination

description: Related Article: Florian Kraus, Sergei I. Ivlev, Jascha Bandemehr, Malte Sachs, Clemens Pietzonka, Matthias Conrad, Michael Serafin, Bernd G. Müller|2020|Z.Anorg.Allg.Chem.|646|1481|doi:10.1002/zaac.202000048
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.20288733
title: spiro.illumina.sorted.bam

description: Illumina reads mapped to Spironucleus salmonicida assembly (42 scaffolds) by BWA-MEM (v0.7.15)
DOI: 10.6084/m9.figshare.20288733.v1
title: spiro.illumina.sorted.bam

description: Illumina reads mapped to Spironucleus salmonicida assembly (42 scaffolds) by BWA-MEM (v0.7.15)
DOI: 10.7939/dvn/jehgbw
title: Raman spectra catalogue for inclusions in diamond

description: A reference collection of Raman spectra for identifying inclusions in diamond. The catalogue contains spectra from real inclusions, as well as relevant mineral specimens and experimental products. Some spectra have been digitized from published figures, as a set of x-y coordinates.