cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26644162.v1
title: Additional file 1 of Identification of ceRNA-vsiRNA-mRNA network for exploring the mechanism underlying pathogenesis of sugarcane mosaic virus in resistant and susceptible maize inbred lines

description: Additional file 1: Table S1. Statistical analysis of small RNAs from Mock- and SCMV-inoculated resistant and susceptible maize inbred lines. Table S2. Statistical analysis of RNA-seq data from 12 cDNA libraries of maize samples. Table S3. The differentially expressed circRNAs in Mo17 plants. Table S4. The differentially expressed circRNAs in Chang7-2 plants. Table S5. The differentially expressed lncRNAs in Mo17 plants. Table S6. The differentially expressed lncRNAs in Chang7-2 plants. Table S7. The differentially expressed mRNAs in Mo17 plants. Table S8. The differentially expressed mRNAs in Chang7-2 plants. Table S9. vsiRNAs with high abundance in SM libraries. Table S10. vsiRNAs with high abundance in SC libraries. Table S11. GO analysis of target genes of selected vsiRNAs from MM libraries. Table S12. GO analysis of target genes of selected vsiRNAs from MC libraries. Table S13. KEGG analysis of target genes of selected vsiRNAs from MM libraries. Table S14. KEGG analysis of target genes of selected vsiRNAs from MC libraries. Table S15. GO terms and KEGG pathways for the target genes of selected 10 vsiRNAs. Table S16. The ceRNA networks in Mo17 plants. Table S17. The ceRNA networks in Chang7-2 plants. Table S18. The important vsiRNAs and their associated circRNAs, lncRNAs and mRNAs. Table S19. The primers used in this study.
DOI: 10.6084/m9.figshare.26644162
title: Additional file 1 of Identification of ceRNA-vsiRNA-mRNA network for exploring the mechanism underlying pathogenesis of sugarcane mosaic virus in resistant and susceptible maize inbred lines

description: Additional file 1: Table S1. Statistical analysis of small RNAs from Mock- and SCMV-inoculated resistant and susceptible maize inbred lines. Table S2. Statistical analysis of RNA-seq data from 12 cDNA libraries of maize samples. Table S3. The differentially expressed circRNAs in Mo17 plants. Table S4. The differentially expressed circRNAs in Chang7-2 plants. Table S5. The differentially expressed lncRNAs in Mo17 plants. Table S6. The differentially expressed lncRNAs in Chang7-2 plants. Table S7. The differentially expressed mRNAs in Mo17 plants. Table S8. The differentially expressed mRNAs in Chang7-2 plants. Table S9. vsiRNAs with high abundance in SM libraries. Table S10. vsiRNAs with high abundance in SC libraries. Table S11. GO analysis of target genes of selected vsiRNAs from MM libraries. Table S12. GO analysis of target genes of selected vsiRNAs from MC libraries. Table S13. KEGG analysis of target genes of selected vsiRNAs from MM libraries. Table S14. KEGG analysis of target genes of selected vsiRNAs from MC libraries. Table S15. GO terms and KEGG pathways for the target genes of selected 10 vsiRNAs. Table S16. The ceRNA networks in Mo17 plants. Table S17. The ceRNA networks in Chang7-2 plants. Table S18. The important vsiRNAs and their associated circRNAs, lncRNAs and mRNAs. Table S19. The primers used in this study.
DOI: 10.15468/dl.mt6zkh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.103878 -32.261435, 149.103878 -32.265926, 149.106124 -32.265926, 149.106124 -32.261435, 149.103878 -32.261435))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065727-240626123714530/datasets/export for details.
DOI: 10.15468/dl.uq2dek
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((145.032244 -36.593581, 145.032244 -36.598072, 145.045719 -36.598072, 145.045719 -36.593581, 145.032244 -36.593581))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065728-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26643910
title: minimal data set.xlsx

description: minimal data set for“The clinical characteristics and SARS‐CoV‐2 infection in children of acute hepatitis with unknown aetiology: A meta‐analysis and systematic review”
DOI: 10.6084/m9.figshare.26564226
title: Additional file 4 of FT-GPI, a highly sensitive and accurate predictor of GPI-anchored proteins, reveals the composition and evolution of the GPI proteome in Plasmodium species

description: Additional file 4: Table S4. Description of proteins from the GPI-AP reference sets. A. P. falciparum reference set from Gilson, et al. [17]. Protein size, number of TM and signal 4.0 prediction were recovered from PlasmoDB. SignalP 5.0 and PredGPI were performed online [47,52]. Essential genes were described by a Mutation Index Score (MIS) and Fitness score (MFS) from transposon saturation mutagenesis experiments [77]. Sequences were downloaded from PlasmoDB release 51. B. P. vivax reference set from Carlton et al [38]. The list of GPI-APs was given in Suppl. Table 8 of the P. vivax genome paper. Sequence analysis was performed as in (A). No information was available concerning gene essentialness in P. vivax. Negative predictions are in red. * Some proteins had no gene names and were arbitrarily labelled from gpi1 to gpi4. P. falciparum Pf_gpi1 P. vivax ortholog was absent from Carlton et al list [38]. P. falciparum P36 ortholog was not in Gilson et al list [17]. The gpi3 protein was labelled as P32 in some references.
DOI: 10.6084/m9.figshare.26564232.v1
title: Additional file 6 of FT-GPI, a highly sensitive and accurate predictor of GPI-anchored proteins, reveals the composition and evolution of the GPI proteome in Plasmodium species

description: Additional file 6: Table S6. FT-GPI parameter set efficacy. The Positive and Negative prediction of each combination of FT-GPI parameters was evaluated based on the detection of the 30 reference GPI-APs of P. falciparum and P. vivax in combination with cytosolic, membrane or among the full proteome. Cytosolic proteins had no TM and signal peptide according to PlasmoDB data (Suppl. Table 4). Membrane proteins presented more than 3 TM according to the same source of information. The formula used to compute the parameters of the test are given with the title of each subsection of the Table. AUC was computed using the binary output of FT-GPI (1 for positive detection and 0 if not).
DOI: 10.6084/m9.figshare.26588214
title: Additional file 4 of Leaves that walk and eggs that stick: comparative functional morphology and evolution of the adhesive system of leaf insect eggs (Phasmatodea: Phylliidae)

description: Additional file 4: Data S1.1. Raw data on egg attachment. Data S1.2. Raw data for additional species on egg attachment on substrates with different surface chemistry. Data S1.3. Profilometric measurements of the tests substrates.
DOI: 10.6084/m9.figshare.26588220
title: Additional file 6 of Leaves that walk and eggs that stick: comparative functional morphology and evolution of the adhesive system of leaf insect eggs (Phasmatodea: Phylliidae)

description: Additional file 6: Data S3. Raw data .tre file for ultrametric ML tree with 48 phylliid taxa.
DOI: 10.6084/m9.figshare.26588217
title: Additional file 5 of Leaves that walk and eggs that stick: comparative functional morphology and evolution of the adhesive system of leaf insect eggs (Phasmatodea: Phylliidae)

description: Additional file 5: Data S2. Raw data .tre file for ML tree based on the sequence data of 172 phasmatodean taxa.
DOI: 10.6084/m9.figshare.26588217.v1
title: Additional file 5 of Leaves that walk and eggs that stick: comparative functional morphology and evolution of the adhesive system of leaf insect eggs (Phasmatodea: Phylliidae)

description: Additional file 5: Data S2. Raw data .tre file for ML tree based on the sequence data of 172 phasmatodean taxa.
DOI: 10.6084/m9.figshare.26588211
title: Additional file 3 of Leaves that walk and eggs that stick: comparative functional morphology and evolution of the adhesive system of leaf insect eggs (Phasmatodea: Phylliidae)

description: Additional file 3: Table S3. Detailed information on taxon and gene sampling including GenBank accession numbers following Bank et al. [1, 40]. The species used in the ancestral. Table S4. Results of fitting models of character evolution to the four datasets comprising egg morphotype, pinnation type, and the binary datasets for presence/absence of adhesion and pinnation. Table S5. Results of Pagel’s binary character correlation test using fitPagel, the ARD model and different root states. The variables x and y stand for the adhesion and pinnation state, respectively. Significance in bold. AIC = Akaike Information criterion, AICw = Akaike weights.
DOI: 10.6084/m9.figshare.26588211.v1
title: Additional file 3 of Leaves that walk and eggs that stick: comparative functional morphology and evolution of the adhesive system of leaf insect eggs (Phasmatodea: Phylliidae)

description: Additional file 3: Table S3. Detailed information on taxon and gene sampling including GenBank accession numbers following Bank et al. [1, 40]. The species used in the ancestral. Table S4. Results of fitting models of character evolution to the four datasets comprising egg morphotype, pinnation type, and the binary datasets for presence/absence of adhesion and pinnation. Table S5. Results of Pagel’s binary character correlation test using fitPagel, the ARD model and different root states. The variables x and y stand for the adhesion and pinnation state, respectively. Significance in bold. AIC = Akaike Information criterion, AICw = Akaike weights.
DOI: 10.6084/m9.figshare.26588205
title: Additional file 1 of Leaves that walk and eggs that stick: comparative functional morphology and evolution of the adhesive system of leaf insect eggs (Phasmatodea: Phylliidae)

description: Additional file 1: Table S1. Table of all Phylliidae species. It is indicated whether the egg of the species is known, its morphotype and pinnation as used for the ancestral state analyses and, for all species with known eggs, the coding for adhesion and pinnation used in Fig. 10.
DOI: 10.6084/m9.figshare.26588214.v1
title: Additional file 4 of Leaves that walk and eggs that stick: comparative functional morphology and evolution of the adhesive system of leaf insect eggs (Phasmatodea: Phylliidae)

description: Additional file 4: Data S1.1. Raw data on egg attachment. Data S1.2. Raw data for additional species on egg attachment on substrates with different surface chemistry. Data S1.3. Profilometric measurements of the tests substrates.
DOI: 10.6084/m9.figshare.26588205.v1
title: Additional file 1 of Leaves that walk and eggs that stick: comparative functional morphology and evolution of the adhesive system of leaf insect eggs (Phasmatodea: Phylliidae)

description: Additional file 1: Table S1. Table of all Phylliidae species. It is indicated whether the egg of the species is known, its morphotype and pinnation as used for the ancestral state analyses and, for all species with known eggs, the coding for adhesion and pinnation used in Fig. 10.
DOI: 10.6084/m9.figshare.26588220.v1
title: Additional file 6 of Leaves that walk and eggs that stick: comparative functional morphology and evolution of the adhesive system of leaf insect eggs (Phasmatodea: Phylliidae)

description: Additional file 6: Data S3. Raw data .tre file for ultrametric ML tree with 48 phylliid taxa.
DOI: 10.6084/m9.figshare.26644321
title: Additional file 2 of Integrated single-cell and bulk RNA sequencing analysis identifies a neoadjuvant chemotherapy-related gene signature for predicting survival and therapy in breast cancer

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26644321.v1
title: Additional file 2 of Integrated single-cell and bulk RNA sequencing analysis identifies a neoadjuvant chemotherapy-related gene signature for predicting survival and therapy in breast cancer

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26644324
title: Additional file 3 of Integrated single-cell and bulk RNA sequencing analysis identifies a neoadjuvant chemotherapy-related gene signature for predicting survival and therapy in breast cancer

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26644324.v1
title: Additional file 3 of Integrated single-cell and bulk RNA sequencing analysis identifies a neoadjuvant chemotherapy-related gene signature for predicting survival and therapy in breast cancer

description: Supplementary Material 3
DOI: 10.25582/data.2019-10.1858771/2365442
title: Data for EMSL Project 48666 from October 2019
DOI: 10.15468/dl.pksrm2
title: Occurrence Download

description: A dataset containing 2395 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dianthus plumarius L."
 ]
}

 The dataset includes 2395 records from 207 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028363-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2020-01.1936445/2365443
title: Data for EMSL Project 48666 from January 2020
DOI: 10.15468/dl.4gduta
title: Occurrence Download

description: A dataset containing 165 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Spain",
 "TaxonKey is Maytenus senegalensis (Lam.) Exell"
 ]
}

 The dataset includes 165 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050195-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kkmcdx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Year 1000-2000",
 "TaxonKey is Larus michahellis J.F.Naumann, 1840"
 ]
}

 The dataset includes 0 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015911-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2019-12.1895416/2365444
title: Data for EMSL Project 48666 from December 2019
DOI: 10.15468/dl.d66fa4
title: Occurrence Download

description: A dataset containing 152 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euglossa viridis (Perty, 1833)"
 ]
}

 The dataset includes 152 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028475-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lzyl6w
title: Occurrence Download

description: A dataset containing 1089 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Commiphora leptophloeos (Mart.) J.B.Gillett"
 ]
}

 The dataset includes 1089 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015917-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qp2cqq
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Montanoa standleyi V.A.Funk"
 ]
}

 The dataset includes 25 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017710-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2020-01.1936484/2365445
title: Data for EMSL Project 48666 from January 2020
DOI: 10.15468/dl.u2w4au
title: Occurrence Download

description: A dataset containing 120 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Ninox jacquinoti (Bonaparte, 1850)"
 ]
}

 The dataset includes 120 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028367-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2020-01.1936485/2365446
title: Data for EMSL Project 48666 from January 2020
DOI: 10.15468/dl.n23ex5
title: Occurrence Download

description: A dataset containing 506697 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Droseraceae)"
 ]
}

 The dataset includes 506697 records from 1435 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028347-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/c442wm
title: Species of warm-water origin Laternula elliptica (King, 1832) (Mollusca: Bivalvia: Laternulidae), a widespread mollusk in recent Antarctica

description: This dataset contains the digitized treatments in Plazi based on the original journal article Egorova, Emma N. (2019): Species of warm-water origin Laternula elliptica (King, 1832) (Mollusca: Bivalvia: Laternulidae), a widespread mollusk in recent Antarctica. The Bulletin of the Russian Far East Malacological Society 23 (1 / 2): 82-116, DOI: 10.5281/zenodo.11088103
DOI: 10.6084/m9.figshare.19738805
title: Added value of CRP to clinical features when assessing appendicitis in children

description: The diagnostic value of C-reactive protein (CRP) for appendicitis in children has not been evaluated in primary care. As biochemical responses and differential diagnoses vary with age, separate evaluation in children and adults is needed. To determine whether adding CRP to symptoms and signs improves the diagnosis of appendicitis in children with acute abdominal pain in primary care. A retrospective cohort study in Dutch general practice. Data was collected from the Integrated Primary Care Information database between 2010 and 2016. We included children aged 4–18 years, with no history of appendicitis, presenting with acute abdominal pain, and having a CRP test. Initial CRP levels were related to the specialist’s diagnosis of appendicitis, and the test’s characteristics were calculated for multiple cut-offs. The value of adding CRP to signs and symptoms was analysed by logistic regression. We identified 1076 eligible children, among whom 203 were referred for specialist evaluation and 70 had appendicitis. The sensitivity and specificity of a CRP cut-off ≥10 mg/L were 0.87 (95%CI, 0.77–0.94) and 0.77 (95%CI, 0.74–0.79), respectively. When symptoms lasted &gt; 48 h, this sensitivity increased to 1.00. Positive predictive values for CRP alone were low (0.18–0.38) for all cut-off values (6–100 mg/L). Adding CRP increased the area under the curve from 0.82 (95%CI, 0.78–0.87) to 0.88 (95%CI, 0.84–0.91), and decision curve analysis confirmed that its addition provided the highest net benefit. CRP adds value to history and physical examination when diagnosing appendicitis in children presenting acute abdominal pain in primary care. Appendicitis is least likely if the CRP value is &lt; 10 mg/L and symptoms have been present for &gt; 48 h.
DOI: 10.6084/m9.figshare.19738805.v1
title: Added value of CRP to clinical features when assessing appendicitis in children

description: The diagnostic value of C-reactive protein (CRP) for appendicitis in children has not been evaluated in primary care. As biochemical responses and differential diagnoses vary with age, separate evaluation in children and adults is needed. To determine whether adding CRP to symptoms and signs improves the diagnosis of appendicitis in children with acute abdominal pain in primary care. A retrospective cohort study in Dutch general practice. Data was collected from the Integrated Primary Care Information database between 2010 and 2016. We included children aged 4–18 years, with no history of appendicitis, presenting with acute abdominal pain, and having a CRP test. Initial CRP levels were related to the specialist’s diagnosis of appendicitis, and the test’s characteristics were calculated for multiple cut-offs. The value of adding CRP to signs and symptoms was analysed by logistic regression. We identified 1076 eligible children, among whom 203 were referred for specialist evaluation and 70 had appendicitis. The sensitivity and specificity of a CRP cut-off ≥10 mg/L were 0.87 (95%CI, 0.77–0.94) and 0.77 (95%CI, 0.74–0.79), respectively. When symptoms lasted &gt; 48 h, this sensitivity increased to 1.00. Positive predictive values for CRP alone were low (0.18–0.38) for all cut-off values (6–100 mg/L). Adding CRP increased the area under the curve from 0.82 (95%CI, 0.78–0.87) to 0.88 (95%CI, 0.84–0.91), and decision curve analysis confirmed that its addition provided the highest net benefit. CRP adds value to history and physical examination when diagnosing appendicitis in children presenting acute abdominal pain in primary care. Appendicitis is least likely if the CRP value is &lt; 10 mg/L and symptoms have been present for &gt; 48 h.
DOI: 10.6084/m9.figshare.19801850
title: General practitioners' attitude towards cooperation with other health professionals in managing patients with multimorbidity and polypharmacy: A cross-sectional study

description: Cooperation between general practitioners (GPs) and other healthcare professionals appears to help reduce the risk of polypharmacy-related adverse events in patients with multimorbidity. To investigate GPs profiles according to their opinions and attitudes about interprofessional cooperation and to study the association between these profiles and GPs’ characteristics. Between May and July 2016, we conducted a cross-sectional survey of a panel of French GPs about their management of patients with multimorbidity and polypharmacy, focussing on their opinions on the roles of healthcare professionals and interprofessional cooperation. We used agglomerative hierarchical cluster analysis to identify GPs profiles, then multivariable logistic regression models to study their associations with the characteristics of these doctors. 1183 GPs responded to the questionnaire. We identified four profiles of GPs according to their declared attitudes towards cooperation: GPs in the ‘very favourable’ profile (14%) were willing to cooperate with various health professionals, including the delegation of some prescribing tasks to pharmacists; GPs in the ‘moderately favourable’ profile (47%) had favourable views on the roles of health professionals, with the exception for this specific delegation of the task; GPs from the ‘selectively favourable’ profile (27%) tended to work only with doctors; GPs from the ‘non-cooperative’ profile (12%) did not seem to be interested in cooperation. Some profiles were associated with GPs’ ages or participation in continuing medical education. Our study highlights disparities between GPs regarding cooperation with other professionals caring for their patients and suggests ways to improve cooperation.