cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.t2wqhz
title: Occurrence Download

description: A dataset containing 946 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Zingiber officinale Roscoe"
 ]
}

 The dataset includes 946 records from 156 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003628-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jyfp72
title: Occurrence Download

description: A dataset containing 1609 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "MediaType is Image",
 "ScientificName is Genista sagittalis L."
 ]
}

 The dataset includes 1609 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003631-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qrdpqu
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "MediaType is Image",
 "ScientificName is Gunnera manicata Linden"
 ]
}

 The dataset includes 35 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003632-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14884572
title: Mapa geomorfológico do estado do Paraná: Padrões de relevo - 4º táxon (versão 1)

description: Arquivos vetoriais do "Mapa geomorfológico do estado do Paraná: Padrões de relevo - 4º táxon (versão 1)", desenvolvido pelo Laboratório de Pesquisas Aplicadas em Geomorfologia e Geotecnologias (LAGEO) da Universidade Federal do Paraná (UFPR), Brasil.

Artigo:  SILVEIRA, C. T. ; SILVEIRA, R. M. P. ; BORTOLINI, W. ; ALMEIDA, V. P. Mapeamento geomorfológico do estado do Paraná com método de classificação digital de padrões de formas de relevo. Revista Brasileira de Geomorfologia, 2025.
DOI: 10.5281/zenodo.14884573
title: Mapa geomorfológico do estado do Paraná: Padrões de relevo - 4º táxon (versão 1)

description: Arquivos vetoriais do "Mapa geomorfológico do estado do Paraná: Padrões de relevo - 4º táxon (versão 1)", desenvolvido pelo Laboratório de Pesquisas Aplicadas em Geomorfologia e Geotecnologias (LAGEO) da Universidade Federal do Paraná (UFPR), Brasil.

Artigo:  SILVEIRA, C. T. ; SILVEIRA, R. M. P. ; BORTOLINI, W. ; ALMEIDA, V. P. Mapeamento geomorfológico do estado do Paraná com método de classificação digital de padrões de formas de relevo. Revista Brasileira de Geomorfologia, 2025.
DOI: 10.15468/dl.s8g2zx
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is RIO GRaNdE dO SUL",
 "TaxonKey is Sporophila beltoni Repenning & Fontana, 2013"
 ]
}

 The dataset includes 81 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003635-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6vr5t8
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is United States of America",
 "Month is March",
 "TaxonKey is Campephilus principalis (Linnaeus, 1758)"
 ]
}

 The dataset includes 56 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003633-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sbxadj
title: Occurrence Download

description: A dataset containing 121 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Capronia epimyces M.E.Barr"
 ]
}

 The dataset includes 121 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003634-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14884727
title: Covalent organic framework as bipolar-type electrode towards all-organic lithium-ion batteries ― a hybrid charge storage mechanism for symmetric cells
DOI: 10.5281/zenodo.14884728
title: Covalent organic framework as bipolar-type electrode towards all-organic lithium-ion batteries ― a hybrid charge storage mechanism for symmetric cells
DOI: 10.5281/zenodo.14884709
title: Earth Analogue Analysis of Volcanic/Tectonic Interactions with Applications to Venusian Stresses

description: Data used in "Earth Analysis of Volcanic/Tectonic Interactions with Applications to Venusian Stresses" for orientation Analysis and rose diagram creation. The projection files are also attached for both the Spanish Peaks GIS Map and the Becuma Mons GIS Map.
DOI: 10.5281/zenodo.14884710
title: Earth Analogue Analysis of Volcanic/Tectonic Interactions with Applications to Venusian Stresses

description: Data used in "Earth Analysis of Volcanic/Tectonic Interactions with Applications to Venusian Stresses" for orientation Analysis and rose diagram creation. The projection files are also attached for both the Spanish Peaks GIS Map and the Becuma Mons GIS Map.
DOI: 10.15468/dl.jaanbx
title: Occurrence Download

description: A dataset containing 2826 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "MediaType is Image",
 "ScientificName is Helichrysum arenarium (L.) Moench"
 ]
}

 The dataset includes 2826 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003636-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10995110
title: Drosophila melanogaster proteome-wide mutational landscape predictions with GEMME.

description: With this resource, we provide the community with Drosophila melanogaster proteome-wide mutational landscapes produced with high-throughput workflow for variant effect prediction (Abakarova et al., GBE 2023). It leverages information extracted from multiple sequence alignments (MSA) generated by the highly efficient ColabFold protocol (M.Mirdita et al. NatMet 2022) with the evolution-based model GEMME (E.Laine et al. MBE 2019). As one of the top variant effect predictors, GEMME is accurate, interpretable, and fast. Since our protocol is sensitive to the quality of the input MSA, we provide global (per-protein) and local (per-residue) confidence metrics to guide users on the reliability of predictions.

Readme:



dmel-all-translation-r6.44.fasta - a fasta file with 30,738 protein isoforms (proteoforms)

FlyProteome_Predictions.zip archive contains 30 460 CSV files (FBpp_ID.csv) with full mutational landscapes, each of them is composed of 4 columns: Mutation, GEMME_score, Pos, GEMME_Confidence.

Dmel6.44PredictionsRecap.csv - a comprehensive summary file, providing the information for each protein, including its FlyBase protein ID (FBpp_ID), symbol (Protein_symbol), length (Length), gene and transcript IDs (FBgn_ID, FBtr_ID) MSA diversity (CovLand), number of sequences in the ColabFold MSA (Nb_seq_MSA), presence or absence of GEMME predictions and its per-protein confidence (GEMME_pred, GEMME_confidence), and a threshold for classifying mutations as benign or pathogenic (GMM3_threshold).
DOI: 10.5281/zenodo.14871341
title: Proteome-wide Prediction of the Functional Impact of Missense Variants with ProteoCast

description: Proteome-wide Prediction of the Functional Impact of Missense Variants with ProteoCast

This dataset contains mutation effect predictions for 22,169 Drosophila melanogaster protein isoforms, classifying over 293 million amino acid substitutions as neutral, uncertain, or impactful. The predictions were generated using the evolution-based GEMME model (E.Laine et al. MBE 2019) with multiple sequence alignments (MSAs) from the highly efficient ColabFold protocol (M.Mirdita et al. NatMet 2022, Abakarova et al. GBE 2023). To ensure reliability, we provide global (per-protein) and local (per-residue) confidence metrics, since the predictions are sensitive to the input MSA quality.

Predictions were validated using natural polymorphisms from the Drosophila Genetic Reference Panel (DGRP) and Drosophila Evolution over Space and Time (DEST2) datasets, as well as FlyBase’s developmentally lethal and hypomorphic mutations. Additionally, the dataset includes sensitivity data for post-translational modifications (PTMs) and short linear motifs (SLiMs), aiding functional site identification.

All this data can be visualized at proteocast.ijm.fr.  

Readme:



Drosophila_ProteoCast.tar.gz - this archive contains ProteoCast predictions and analysis for each unique proteoform, with folder names corresponding to IDs listed in the mapping_database.csv file. A detailed description of the folder structure and contents can be found in ReadMe.txt. 

data.tar.gz - this archive contains the data used in this study, sourced from FlyBase, DGRP2, and DEST2.

Dmel6.44PredictionsRecap.csv - this summary file provides detailed information for each proteoform, all FlyBase protein IDs (FBpp_ID) included. It contains the following data: 



Identifiers: FlyBase protein ID (FBpp_ID), protein symbol (Protein_symbol), gene ID (FBgn_ID), transcript ID (FBtr_ID), and UniProt ID if available (UniProt_ID).

Protein Characteristics: Sequence length (Length) and whether the proteoform is representative (Representative_FBpp).

MSA and GEMME Predictions: Fraction of observed mutations (F_obs) and number of sequences (Nb_seq_MSA) in the ColabFold MSA, presence or absence of GEMME predictions (GEMME_prediction), and global confidence score (GlobalConfidence).

Mutation Classification: Thresholds for defining mutations as neutral, uncertain, or impactful (GMM3_uncertain, GMM3_impactful).

Genomic Information: DNA strand (Strand) and exon coordinates (Exons_coordinates).

Structural Data: 3D structure file name if available (Structure_3D_file, Structure_3D).

Mutation Counts: Number of analyzed mutations and affected residues, labelled as lethal, hypomorphic on FlyBase, or from the DEST2 and DGRP datasets (n_Lethal, n_Lethal_res, n_Hypomorphic, n_Hypomorphic_res, n_DEST2, n_DEST2_res, n_DGRP, n_DGRP_res, n_DEST_DGRP_union, n_DEST_DGRP_union_res).



csv.tar.gz - this archive contains the files generated in this study. A detailed description of the folder structure and contents can be found in ReadMe.txt.
DOI: 10.15468/dl.w58pfy
title: Occurrence Download

description: A dataset containing 765593 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Xeno-canto - Bird sounds from around the world"
 ]
}

 The dataset includes 765593 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003627-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ch9h6e
title: Occurrence Download

description: A dataset listing the 22458 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Xeno-canto - Bird sounds from around the world"
 ]
}

 The dataset's 22458 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003630-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n8xz2g
title: Occurrence Download

description: A dataset containing 2205 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "MediaType is Image",
 "ScientificName is Helleborus viridis L."
 ]
}

 The dataset includes 2205 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003638-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wxa4cg
title: Occurrence Download

description: A dataset containing 1710 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Puma concolor (Linnaeus, 1771)"
 ]
}

 The dataset includes 1710 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003637-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9wkgev
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Aspergillus tubingensis Mosseray"
 ]
}

 The dataset includes 70 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003639-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.um4d8j
title: Occurrence Download

description: A dataset containing 857 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "Country is one of (United States of America, United States Minor Outlying Islands, American Samoa, Micronesia (Federated States of), Guam, Marshall Islands, Northern Mariana Islands, Puerto Rico, Palau, Virgin Islands (U.S.))",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Ectopistes Swainson, 1827)"
 ]
}

 The dataset includes 857 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003640-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28431011
title: cholinergicneurons_Mettl14.rds.gz

description: cholinergic neurons subset
DOI: 10.6084/m9.figshare.28431011.v1
title: cholinergicneurons_Mettl14.rds.gz

description: cholinergic neurons subset
DOI: 10.15468/dl.782cg6
title: Occurrence Download

description: A dataset containing 2412 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "MediaType is Image",
 "ScientificName is Hydrocotyle vulgaris L."
 ]
}

 The dataset includes 2412 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003641-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z4y8ya
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is one of (RIO GRaNdE dO SUL, Rio Grande Do Sul)",
 "TaxonKey is Spizaetus tyrannus (Wied-Neuwied, 1820)"
 ]
}

 The dataset includes 55 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003642-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.abnpkf
title: Occurrence Download

description: A dataset containing 1214 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "MediaType is Image",
 "ScientificName is Iris ×germanica L."
 ]
}

 The dataset includes 1214 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003644-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28431005
title: mettl_integrated_slim.rds.gz

description: all cells before subsetting
DOI: 10.6084/m9.figshare.28431005.v1
title: mettl_integrated_slim.rds.gz

description: all cells before subsetting
DOI: 10.15468/dl.6qz7c9
title: Occurrence Download

description: A dataset containing 11915 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "MediaType is Image",
 "ScientificName is Lotus corniculatus L."
 ]
}

 The dataset includes 11915 records from 200 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003645-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sdxpzv
title: Occurrence Download

description: A dataset containing 5231 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Lupinus perennis L.",
 "Country is one of (Canada, United States of America)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5231 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003646-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w79xxj
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is one of (RIO GRaNdE dO SUL, Rio Grabde do Sul, Rio Grande so Sul, Rio Grande do Sul)",
 "TaxonKey is Spizaetus ornatus (Daudin, 1800)"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003648-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fa9wks
title: Occurrence Download

description: A dataset containing 453 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "MediaType is Image",
 "ScientificName is Lotus maritimus L."
 ]
}

 The dataset includes 453 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003647-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28431002
title: skeletalmns.rds.gz

description: skeletal motor neurons subset
DOI: 10.6084/m9.figshare.28431002.v1
title: skeletalmns.rds.gz

description: skeletal motor neurons subset
DOI: 10.15468/dl.4d97mu
title: Occurrence Download

description: A dataset containing 700 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "MediaType is Image",
 "ScientificName is Lysichiton americanus Hultén & H.St.John"
 ]
}

 The dataset includes 700 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003649-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14647434
title: A posterior insula to lateral amygdala pathway transmits US-offset information with a limited role in fear learning

description: This is the third upload expanding the main repository accessible at doi: 10.5281/zenodo.14604021, which stores the raw data that gave rise to the study by Palchaudhuri et al. (2025) published in Cell Reports 44(2):115320 (doi: 10.1016/j.celrep.2025.115320).

This part of the repository contains only the archived data files. Please find the detailed description and the associated metadata in the main repository.
DOI: 10.5281/zenodo.14647435
title: A posterior insula to lateral amygdala pathway transmits US-offset information with a limited role in fear learning

description: This is the third upload expanding the main repository accessible at doi: 10.5281/zenodo.14604021, which stores the raw data that gave rise to the study by Palchaudhuri et al. (2025) published in Cell Reports 44(2):115320 (doi: 10.1016/j.celrep.2025.115320).

This part of the repository contains only the archived data files. Please find the detailed description and the associated metadata in the main repository.
DOI: 10.15468/dl.day3dc
title: Occurrence Download

description: A dataset containing 151 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "MediaType is Image",
 "ScientificName is Lysichiton camtschatcensis (L.) Schott"
 ]
}

 The dataset includes 151 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003650-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14647368
title: A posterior insula to lateral amygdala pathway transmits US-offset information with a limited role in fear learning

description: This is the second upload expanding the main repository accessible at doi: 10.5281/zenodo.14604021, which stores the raw data that gave rise to the study by Palchaudhuri et al. (2025) published in Cell Reports 44(2):115320 (doi: 10.1016/j.celrep.2025.115320). 

This part of the repository contains only the archived data files. Please find the detailed description and the associated metadata in the main repository.
DOI: 10.5281/zenodo.14647369
title: A posterior insula to lateral amygdala pathway transmits US-offset information with a limited role in fear learning

description: This is the second upload expanding the main repository accessible at doi: 10.5281/zenodo.14604021, which stores the raw data that gave rise to the study by Palchaudhuri et al. (2025) published in Cell Reports 44(2):115320 (doi: 10.1016/j.celrep.2025.115320). 

This part of the repository contains only the archived data files. Please find the detailed description and the associated metadata in the main repository.
DOI: 10.15468/dl.2287np
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is one of (RIO GRaNdE dO SUL, Rio Grand do Sul)",
 "TaxonKey is Spizaetus melanoleucus (Vieillot, 1816)"
 ]
}

 The dataset includes 37 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003651-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2l9dz9
title: CCDC 2392331: Experimental Crystal Structure Determination

description: Related Article: Yan Jin, Jing-Jing Song, Yi-Yi Yang, Xue-Qin Song, Li Wang|2025|Inorg.Chem.|64|1939|doi:10.1021/acs.inorgchem.4c04678
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.