cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25402/fsg.23867628.v1
title: Table S2 list of pathogens and resistance genes - Diagnostic performances and therapeutic impact of the Unyvero Implant and Tissue Infection multiplex PCR in periprosthetic joint infections

description: <strong>Aim: </strong>We evaluated the diagnostic performances of Unyvero Implant and Tissue Infection multiplex PCR (mPCR) (Curetis) and the clinical impact of this PCR on therapeutic decisions. <strong>Materials & methods:</strong>AmPCR was performed on 33 joint fluids in addition to standard culture. A group of experts analyzed <em>a posteriori </em>the impact of the mPCR in the patient management. <strong>Results: </strong>The rate of concordance with culture was 74% (20<strong>/</strong>27). The sensitivity of the PCR was 59% and the specificity 90%. Clinicians would have started an appropriate treatment sooner for six patients (from 2 to 22 days earlier). <strong>Conclusion: </strong>The PCR would improve the management of 22% of the patients. For other patients, mPCR results have to be completed with the culture.
DOI: 10.25402/fsg.23867625
title: Table S1 - Diagnostic performances and therapeutic impact of the Unyvero Implant and Tissue Infection multiplex PCR in periprosthetic joint infections

description: <strong>Aim: </strong>We evaluated the diagnostic performances of Unyvero Implant and Tissue Infection multiplex PCR (mPCR) (Curetis) and the clinical impact of this PCR on therapeutic decisions. <strong>Materials & methods:</strong>AmPCR was performed on 33 joint fluids in addition to standard culture. A group of experts analyzed <em>a posteriori </em>the impact of the mPCR in the patient management. <strong>Results: </strong>The rate of concordance with culture was 74% (20<strong>/</strong>27). The sensitivity of the PCR was 59% and the specificity 90%. Clinicians would have started an appropriate treatment sooner for six patients (from 2 to 22 days earlier). <strong>Conclusion: </strong>The PCR would improve the management of 22% of the patients. For other patients, mPCR results have to be completed with the culture.
DOI: 10.23636/3kkh-5t10
title: EAP031 Catalogue Metadata

description: This Excel spreadsheet contains the metadata that describes the archival collection digitised in Bulgaria by the EAP031 "The Treasures of Danzan Ravjaa" project team. The metadata was originally created by the EAP031 project team that digitised the archive in 2005. The project team was led by Professor Caroline Humphrey. This metadata was subsequently curated and enhanced by Tsering Samdup during his PhD placement with the Endangered Archives Programme in 2019-20. The data was also curated by Tibetan cataloguer Charles Manson and EAP cataloguer Graham Jevon. This spreadsheet represents the metadata after it had been curated, edited, and enhanced.
description: UK
DOI: 10.23636/hy56-gp72
title: EAP696 Catalogue Metadata

description: This Excel spreadsheet contains the metadata that describes the archival collection digitised in Bulgaria by the EAP696 "Minority press in Ottoman Turkish in Bulgaria" project team. The metadata was originally created by the EAP696 project team that digitised the archive in 2014. The project team was led by Mr Stoyan Shivarov. This metadata was subsequently curated and enhanced by Seda İzmirli-Karamanlı during her PhD placement with the Endangered Archives Programme in 2021. This spreadsheet represents the metadata after it had been curated, edited, and enhanced by Seda İzmirli-Karamanlı.
description: UK
DOI: 10.17037/data.00003590
title: Codelists for: "Can observational data be used to determine drug effectiveness?"

description: Comparative treatment effects of oral anticoagulants for stroke prevention in atrial fibrillation analysis of routinely collected data in CPRD Aurum, HES, ONS, with validation against results from the ARISTOTLE randomised controlled trial
DOI: 10.5066/p9h85bk0
title: Eutrophication models to simulate changes in the water quality of Green Lake, Wisconsin in response to changes in phosphorus loading, with supporting water-quality data for the lake, its tributaries, and atmospheric deposition

description: In this data release, we provide data to describe the water quality in Green Lake, Wisconsin, from 1905 to 2020, primarily the constituents for which it is impaired, including near-surface total phosphorus concentrations and metalimnetic dissolved oxygen concentrations, and quantify the water and phosphorus inputs to the lake. We also provide inputs to and outputs from the General Lake Model coupled to the Aquatic Ecodynamics modeling library (GLM-AED) hydrodynamic water-quality model to describe the factors that have caused low dissolved oxygen concentrations in the metalimnion of Green Lake; and quantify how changes in phosphorus loading should affect near-surface total phosphorus and chlorophyll-a concentrations, water clarity, and the minimum dissolved oxygen concentrations in the metalimnion the lake. This data release includes 5 child items: (1) Lake, stream, meteorology, and atmospheric deposition data, which contains morphology, meteorology, atmospheric deposition, water quality data and mass balance data for the lake; (2) GLM calibration inputs and outputs, which contains inputs to and outputs from the GLM model for which physical parameters in the model were calibrated; (3) GLM-AED calibration inputs and outputs, which contains which contains inputs to and outputs from the GLM-AED model for which physical, chemical, and biological parameters in the model were calibrated; (4) GLM-AED determining causes of metalimnetic dissolved oxygen minima, which contains all of the data needed to run the model to determine the causes of metalimnetic oxygen minima (MOM), and the outputs from the model; and (5) GLM-AED response to changes in phosphorus loading, which contains all of the data needed to run the model to determine how dissolved oxygen, near surface total phosphorus, and near-surface chlorophyll-a concentrations respond to changes in phosphorus loading from the watershed, and the outputs from the model.
DOI: 10.25773/6zhs-pn89
title: Dataset: Baywide distribution of benthic ecological functions in the past decades in the Chesapeake Bay
DOI: 10.48366/r604319
title: A Catalog of LLM's of Camelid Species: Llama-1, Alpaca, and Vicuna

description: This comparison showcases academically developed Alpaca from Stanford University and Vicuna from Berkeley in collaboration with other universities. Both models are finetuned variants based on Llama-1 developed by Meta AI.
DOI: 10.5281/zenodo.8215395
title: Data and code associated with Neanderthal coexistence with Homo sapiens in Europe was affected by herbivore carrying capacity

description: Here data and codes are available to reproduce the models and figure rendering of the paper: “Neanderthal coexistence with Homo sapiens in Europe was affected by herbivore carrying capacity”. This research is based on two sets of data: 1) herbivore species recovered from archaeo-palaeontological sites, and 2) chronometric determinations obtained from archaeological units with techno-complexes attributed to Neanderthals or modern humans. All this information is available in the Data.xlsx file. The file MainScript.R includes the functions to estimate the biomass of each herbivore species according to the Net Primary Productivity (NPP), the allometric relationships between body mass and population density, and the specific herbivore guild composition in each region. This script was used to analyse and compare the NPP and the herbivore guild composition in each biogeographic region of Europe during the Marine Isotope Stage (MIS) 3. The file HB.R reproduces the validation process of the macroecological model to estimate herbivore abundances (used in Main.R) against empirical present-day herbivore densities from a broad range of terrestrial ecosystems. Within the Paleoclimate folder, the file Pollen.R was used to perform pollen-based paleoclimate reconstructions with weighted averaging (WA) regressions. These predictive functions estimate temperature and precipitation from the palynological fossil record in Europe. Within the OLE folder, the OLE.R was used to perform optimal linear estimation (OLE) models and compare the obtained chronologies with the outcomes obtained from Bayesian age models. In the "Correlations_ESF" folder, there are too heavily compressed files. To run the codes correctly, it is necessary first to decompress any document and save all files within the same folder. The “Output_Experiment_A_B_C_FC1&2” file is in Excel Binary Workbook format (.xlsb) because it is a large-sized document. Before running the codes within this folder, save/convert this file into .xlsx format. There is a "README" file to help you with these two steps. Once these steps and requirements are met, the file "Correlations_ESF.R" can be run to perform Eigenvector Spatial Filtering analyses that assess the correlation between the end of the techno-complexes associated with Neanderthals, those associated with AMH, and the productivity of the ecosystems in each European region. As the data and codes in this repository are complete, they can be reproduced with only an R environment (tested for R v4.2.0) in RStudio. The necessary package dependencies are documented in each .R file. The content of this repository was made possible thanks to funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement No. 818299) for the SUBSILIENCE project.
DOI: 10.5281/zenodo.8215394
title: Data and code associated with Neanderthal coexistence with Homo sapiens in Europe was affected by herbivore carrying capacity

description: Here data and codes are available to reproduce the models and figure rendering of the paper: “Neanderthal coexistence with Homo sapiens in Europe was affected by herbivore carrying capacity”. This research is based on two sets of data: 1) herbivore species recovered from archaeo-palaeontological sites, and 2) chronometric determinations obtained from archaeological units with techno-complexes attributed to Neanderthals or modern humans. All this information is available in the Data.xlsx file. The file MainScript.R includes the functions to estimate the biomass of each herbivore species according to the Net Primary Productivity (NPP), the allometric relationships between body mass and population density, and the specific herbivore guild composition in each region. This script was used to analyse and compare the NPP and the herbivore guild composition in each biogeographic region of Europe during the Marine Isotope Stage (MIS) 3. The file HB.R reproduces the validation process of the macroecological model to estimate herbivore abundances (used in Main.R) against empirical present-day herbivore densities from a broad range of terrestrial ecosystems. Within the Paleoclimate folder, the file Pollen.R was used to perform pollen-based paleoclimate reconstructions with weighted averaging (WA) regressions. These predictive functions estimate temperature and precipitation from the palynological fossil record in Europe. Within the OLE folder, the OLE.R was used to perform optimal linear estimation (OLE) models and compare the obtained chronologies with the outcomes obtained from Bayesian age models. In the "Correlations_ESF" folder, there are too heavily compressed files. To run the codes correctly, it is necessary first to decompress any document and save all files within the same folder. The “Output_Experiment_A_B_C_FC1&2” file is in Excel Binary Workbook format (.xlsb) because it is a large-sized document. Before running the codes within this folder, save/convert this file into .xlsx format. There is a "README" file to help you with these two steps. Once these steps and requirements are met, the file "Correlations_ESF.R" can be run to perform Eigenvector Spatial Filtering analyses that assess the correlation between the end of the techno-complexes associated with Neanderthals, those associated with AMH, and the productivity of the ecosystems in each European region. As the data and codes in this repository are complete, they can be reproduced with only an R environment (tested for R v4.2.0) in RStudio. The necessary package dependencies are documented in each .R file. The content of this repository was made possible thanks to funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement No. 818299) for the SUBSILIENCE project.
DOI: 10.5519/qd.727dsgpp
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (17 records)
DOI: 10.5281/zenodo.8215046
title: eupsittula_astec_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8215045
title: eupsittula_astec_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8215415
title: The code and data for "Deep-Learning Correction Methods for WRF Model Precipitation Forecasting from 2014 Through 2022 in Zhengzhou city, China"

description: The code and data for “Deep-Learning Correction Methods for WRF Model Precipitation Forecasting from 2014 Through 2022 in Zhengzhou city, China”
DOI: 10.5281/zenodo.8215414
title: The code and data for "Deep-Learning Correction Methods for WRF Model Precipitation Forecasting from 2014 Through 2022 in Zhengzhou city, China"

description: The code and data for “Deep-Learning Correction Methods for WRF Model Precipitation Forecasting from 2014 Through 2022 in Zhengzhou city, China”
DOI: 10.5281/zenodo.8215430
title: hyalogyrina_grasslei_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8215429
title: hyalogyrina_grasslei_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8215442
title: labeobarbus_marequensis_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8215441
title: labeobarbus_marequensis_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8215461
title: micrastur_mirandollei_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8215460
title: micrastur_mirandollei_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8215470
title: urosalpinx_cinerea_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8215469
title: urosalpinx_cinerea_zanfona_1.fasta.gz

description: .
DOI: 10.7944/p9irl3gv
title: 2023 Alaska Goose, Swan, and Crane Management Indexes

description: This project is an annual communicating memo explicitly designed to inform the Pacific Flyway Representative of waterfowl survey results for incorporation of the data into harvest management reports and regulatory processes. This memorandum is additionally shared widely with partners outside the USFWS. The major products are an annual reporting memo automatically generated from an R Quarto document, and 19 species-specific comma delimited table files that appear in the memo, and the generating qmp code.
DOI: 10.6084/m9.figshare.23867634
title: <b>Imaging-assisted Fiber optic “All-in-one” theranostics sensor</b>

description: We develop an “all-in-one” fiber-optic theranostics probe (AFOT) with the combination of nitroreductase (NTR) fluorescent molecules and graphene/gold nanostar (Gr/AuNS) nanomaterials to enable the integrated strategy for tumor sensing and treatment. The sensor can not only detect the hypoxic signal in the tumor within ten seconds with high sensitivity, but also realize the identification of the tumor margin mediated by the high spatio-temperal manipulation. Using the same fiber sensor, the xenograft tumors of mice can be treated through the self-photothermal therapy (PTT) soon after detection, resulting in a high cure rate of 83.33% without the risk of recurrence. More importantly, the AFOT is highly adaptable to the conventional medical imaging techniques, such as laparoscope, magnetic resonance, and ultrasound imaging, which facilitates the imaging-assisted navigation.
DOI: 10.6084/m9.figshare.23867634.v1
title: Untitled Item

description: We develop an “all-in-one” fiber-optic theranostics probe (AFOT) with the combination of nitroreductase (NTR) fluorescent molecules and graphene/gold nanostar (Gr/AuNS) nanomaterials to enable the integrated strategy for tumor sensing and treatment. The sensor can not only detect the hypoxic signal in the tumor within ten seconds with high sensitivity, but also realize the identification of the tumor margin mediated by the high spatio-temperal manipulation. Using the same fiber sensor, the xenograft tumors of mice can be treated through the self-photothermal therapy (PTT) soon after detection, resulting in a high cure rate of 83.33% without the risk of recurrence. More importantly, the AFOT is highly adaptable to the conventional medical imaging techniques, such as laparoscope, magnetic resonance, and ultrasound imaging, which facilitates the imaging-assisted navigation.
DOI: 10.6084/m9.figshare.23868972
title: Sharma et al., 2023. TWISP: A Transgenic Worm for Interrogating Signal Propagation in <i>C. elegans</i>

description: The dataset corresponding to Sharma et al., 2023, TWISP: A Transgenic Worm for Interrogating Signal Propagation in <i>C. elegans</i>.Datasets are listed in folders with corresponding figure and supplementary table.
DOI: 10.5281/zenodo.8213365
title: Accurate TCR-pMHC Interaction Prediction Using a BERT-based Transfer Learning Method

description: The datasets used for the TABR-BERT. For the complete training and testing code of TABR-BERT, see Freshwind-Bioinformatics/TABR-BERT: TABR-BERT: an Accurate and Robust BERT-based Transfer Learning Model for TCR-pMHC Interaction Prediction (github.com).
DOI: 10.5281/zenodo.8213366
title: Accurate TCR-pMHC Interaction Prediction Using a BERT-based Transfer Learning Method

description: The training and test datasets for the TABR-BERT. For the complete training and testing code of TABR-BERT, see Freshwind-Bioinformatics/TABR-BERT: TABR-BERT: an Accurate and Robust BERT-based Transfer Learning Model for TCR-pMHC Interaction Prediction (github.com).
DOI: 10.5281/zenodo.8213824
title: Accurate TCR-pMHC Interaction Prediction Using a BERT-based Transfer Learning Method

description: The training and test datasets for the TABR-BERT. For the complete training and testing code of TABR-BERT, see Freshwind-Bioinformatics/TABR-BERT: TABR-BERT: an Accurate and Robust BERT-based Transfer Learning Model for TCR-pMHC Interaction Prediction (github.com).
DOI: 10.5281/zenodo.8215354
title: Accurate TCR-pMHC Interaction Prediction Using a BERT-based Transfer Learning Method

description: The datasets used for the TABR-BERT. For the complete training and testing code of TABR-BERT, see Freshwind-Bioinformatics/TABR-BERT: TABR-BERT: an Accurate and Robust BERT-based Transfer Learning Model for TCR-pMHC Interaction Prediction (github.com).
DOI: 10.5281/zenodo.8215173
title: TC-RADAR v3j data files

description: This repository contains netCDF data files from the Tropical Cyclone Radar Archive of Doppler Analyses with Re-centering (TC-RADAR) version v3j. For more information on the creation of the database, refer to Fischer et al. (2022; https://doi.org/10.1175/MWR-D-21-0223.1). This repository also contains a readme for additional information on the variables stored in the "swath" and "merged" data files. The bias-corrected reflectivity data file was created following the methods described in Wadler et al. (2023; <em>Monthly Weather Review</em>, accepted pending minor revision).
DOI: 10.5281/zenodo.8215172
title: TC-RADAR v3j data files

description: This repository contains netCDF data files from the Tropical Cyclone Radar Archive of Doppler Analyses with Re-centering (TC-RADAR) version v3j. For more information on the creation of the database, refer to Fischer et al. (2022; https://doi.org/10.1175/MWR-D-21-0223.1). This repository also contains a readme for additional information on the variables stored in the "swath" and "merged" data files. The bias-corrected reflectivity data file was created following the methods described in Wadler et al. (2023; <em>Monthly Weather Review</em>, accepted pending minor revision).
DOI: 10.5281/zenodo.8188805
title: A2.2a Digital repositories data citation practices. Supplementary material

description: Data to complement the quantitative analysis of data citation practices in digital repositories based on metadata records from the re3data.org repositories registry. Data was retrieved using re3data.org API on 23-02-2023 and 06-03-2023 and processed using the OpenRefine software. Part of "A FAIR-enabling citation model for Cultural Heritage Objects" project activities.
description: This project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 101017536 and is supported by the EOSC Future (https://eoscfuture.eu/) through the RDA (https://www.rd-alliance.org/) Open Call mechanism (https://eoscfuture-grants.eu/provider/research-data-alliance), based on evaluations of external, independent experts.
DOI: 10.5281/zenodo.8188806
title: A2.2a Digital repositories data citation practices. Supplementary material

description: Data to complement the quantitative analysis of data citation practices in digital repositories based on metadata records from the re3data.org repositories registry. Data was retrieved using re3data.org API on 23-02-2023 and 06-03-2023 and processed using the OpenRefine software. Part of "A FAIR-enabling citation model for Cultural Heritage Objects" project activities.
description: This project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 101017536 and is supported by the EOSC Future (https://eoscfuture.eu/) through the RDA (https://www.rd-alliance.org/) Open Call mechanism (https://eoscfuture-grants.eu/provider/research-data-alliance), based on evaluations of external, independent experts.
DOI: 10.5519/qd.u5b5174p
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (76 records)
DOI: 10.5517/ccdc.csd.cc2byhb4
title: CCDC 2173296: Experimental Crystal Structure Determination

description: Related Article: Kingsley Christian Kemp, Wanuk Choi, Donghui Jo, Sung Hwan Park, Suk Bong Hong|2022|Chemical Science|13|10455|doi:10.1039/D2SC03628B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5519/qd.vt5l6gc2
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (191 records)
DOI: 10.6084/m9.figshare.23154923
title: Datafiles for C. fasciculata adaptation study

description: These are all of the datafiles use to produce the figures and data reported in the C. fasciculata adaptation manuscript
DOI: 10.6084/m9.figshare.23154923.v4
title: Datafiles for C. fasciculata adaptation study

description: These are all of the datafiles use to produce the figures and data reported in the C. fasciculata adaptation manuscript