cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7677122.v1
title: Sexual Function of Women with Infertility

description: Abstract Objective To assess the sexual function, anxiety, and depression of infertile women relative to a control group. Methods Infertile women (infertile group, IG) of reproductive age were invited to participate in this controlled study. A control group (CG) of women was recruited from the general population of the same city. Sexual function was assessed by the Female Sexual Function Index (FSFI), and anxiety and depression were measured by the Hospital Anxiety and Depression Scale (HADS). Results A total of 280 women participated in the present study, 140 in the IG and 140 in the CG. The analysis of the FSFI scores showed that 47 women (33.57%) in the IG and 49 women (35%) in the CG had sexual dysfunction (FSFI ≤ 26.55; p = 0.90). Women with anxiety or depression had a greater risk of sexual dysfunction, and sexual dysfunction increased the risk of anxiety and depression. Married women had a lower risk of depression than single women who were living with their partners. Conclusion Infertilewomenhadno increased riskof sexual dysfunction relativetocontrols. Anxiety and depression increased the risk of sexual dysfunction in the studied population.
DOI: 10.6084/m9.figshare.7677098
title: Lack of quadruple and quintuple mutant alleles associated with sulfadoxine-pyrimethamine resistance in Plasmodium vivax isolates from Brazilian endemic areas

description: BACKGROUND AND OBJECTIVE Brazil is responsible for a large number of Plasmodium vivax cases in America. Given the emergence of P. vivax parasites resistant to chloroquine and the effectiveness of antifolates in vivax malaria treatment together with a correlation between mutations in P. vivax dhfr and dhps genes and SP treatment failure, the point mutations in these genes were investigated. METHODS Blood samples from 54 patients experiencing vivax malaria symptomatic episodes in the Amazonian Region were investigated. Genomic DNA was extracted using a DNA extraction kit (QIAGENTM). Nested polymerase chain reaction (PCR) amplification was carried out followed by Sanger sequencing to detect single nucleotide polymorphisms (SNPs). FINDINGS All tested isolates showed non-synonymous mutations in pvdhfr gene: 117N (54/54, 100%) and 58R (25/54, 46%). Double mutant allele 58R/117N (FRTNI, 28%) was the most frequent followed by triple mutant alleles (58R/117N/173L, FRTNL, 11%; 58R/61M/117N, FRMNI, 5% 117N/173L, FSTNL, 4%) and quadruple mutant allele (58R/61M/117N/173L, FRMNL, 2%). A single mutation was observed at codon C383G in pvdhps gene (SGKAV, 48%). CONCLUSION No evidence of molecular signatures associated with P. vivax resistance to SP was observed in the Brazilian samples.
DOI: 10.6084/m9.figshare.7677107
title: Analytical validation of real-time quantitative PCR assays for optimum diagnosis of vivax malaria

description: BACKGROUND The prompt diagnosis of plasmodial species for effective treatment prevents worsening of individual health and avoids transmission maintenance or even malaria reintroduction in areas where Plasmodium does not exist. Polymerase chain reaction (PCR) allows for the detection of parasites below the threshold of microscopic examination. OBJECTIVE Our aim was to develop a real-time PCR test to reduce diagnostic errors and increase efficacy. METHODS The lower limit of quantification and the linearity/analytical sensitivity to measure sensitivity or limit of detection (LoD) were determined. Intra-assay variations (repeatability) and alterations between assays, operators, and instruments (reproducibility) were also assessed to set precision. FINDINGS The linearity in SYBR™ Green and TaqMan™ systems was 106 and 102 copies and analytical sensitivity 1.13 and 1.17 copies/μL, respectively. Real-time PCR was more sensitive than conventional PCR, showing a LoD of 0.01 parasite (p)/μL. Reproducibility and repeatability (precision) were 100% for up to 0.1 p/μL in SYBR™ Green and 1 p/μL in TaqMan™ and conventional PCR. CONCLUSION Real-time PCR may replace conventional PCR in reference laboratories for P. vivax detection due to its rapidity. The TaqMan™ system is the most indicated when quantification assays are required. Performing tests in triplicate when diagnosing Plasmodium-infected-asymptomatic individuals is recommended to minimise diagnostic errors.
DOI: 10.7284/123952
title: GNSS (Global Navigation Satellite System) data collected during research cruise BH15-01 using a Northstar 941X instrument system onboard the platform RV Blue Heron

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7677107.v1
title: Analytical validation of real-time quantitative PCR assays for optimum diagnosis of vivax malaria

description: BACKGROUND The prompt diagnosis of plasmodial species for effective treatment prevents worsening of individual health and avoids transmission maintenance or even malaria reintroduction in areas where Plasmodium does not exist. Polymerase chain reaction (PCR) allows for the detection of parasites below the threshold of microscopic examination. OBJECTIVE Our aim was to develop a real-time PCR test to reduce diagnostic errors and increase efficacy. METHODS The lower limit of quantification and the linearity/analytical sensitivity to measure sensitivity or limit of detection (LoD) were determined. Intra-assay variations (repeatability) and alterations between assays, operators, and instruments (reproducibility) were also assessed to set precision. FINDINGS The linearity in SYBR™ Green and TaqMan™ systems was 106 and 102 copies and analytical sensitivity 1.13 and 1.17 copies/μL, respectively. Real-time PCR was more sensitive than conventional PCR, showing a LoD of 0.01 parasite (p)/μL. Reproducibility and repeatability (precision) were 100% for up to 0.1 p/μL in SYBR™ Green and 1 p/μL in TaqMan™ and conventional PCR. CONCLUSION Real-time PCR may replace conventional PCR in reference laboratories for P. vivax detection due to its rapidity. The TaqMan™ system is the most indicated when quantification assays are required. Performing tests in triplicate when diagnosing Plasmodium-infected-asymptomatic individuals is recommended to minimise diagnostic errors.
DOI: 10.6084/m9.figshare.7677092
title: Improving the reference standard for the diagnosis of canine visceral leishmaniasis: a challenge for current and future tests

description: BACKGROUND Studies aimed at validating canine visceral leishmaniasis diagnostic tests present heterogeneous results regarding test accuracy, partly due to divergences in reference standards used and different infection evolution periods in animals. OBJECTIVE This study aimed to evaluate the accuracy of the rapid test-dual path platform (TR-DPP) (Biomanguinhos®), EIE-Leishmaniose-Visceral-Canina-Biomanguinhos (EIE-LVC) (Biomanguinhos®), enzyme-linked immunosorbent assay (ELISA) rK39 (in-house), and the direct agglutination test (DAT-Canis) against a reference standard comprising parasitological and molecular techniques. METHODS A phase II/III validation study was carried out in sample sera from 123 predominantly asymptomatic dogs living in an area endemic for visceral leishmaniasis. FINDINGS Sixty-nine (56.1%) animals were considered infected according to the reference standard. For each test, the sensitivity and specificity, respectively, were as follows: TR-DPP, 21.74% [confidence interval (CI)95% 13.64% to 32.82%] and 92.59% (CI95% 82.45% to 97.08%); EIE-LVC, 11.59% (CI95% 5.9% to 21.25%) and 90.74% (CI95% 80.09% to 95.98%); ELISA rK39, 37.68% (CI95% 27.18% to 49.48%) and 83.33% (CI95% 71.26% to 90.98%); and DAT-Canis, 18.84% (CI95% 11.35% to 29.61%) and 96.30% (CI95% 87.46% to 98.98%). CONCLUSION We concluded that improving the sensitivity of serum testing for diagnosing asymptomatic dogs must constitute a priority in the process of developing new diagnostic tests to be used in the visceral leishmaniasis control program in Brazil.
DOI: 10.6084/m9.figshare.7677095
title: Preparation of gelatin beads treated with glucose and glycerol

description: Abstract Gelatin is employed in pharmaceutical applications because of its biodegradability, biocompatibility and low toxicity. However, it may be necessary to promote gelatin crosslinking in order to develop drug release systems and extend release times. SEC analyses are used here for the first time to monitor the evolution of molar mass distributions of gelatins during treatment with glycerol and glucose in dispersed media. Unambiguous experimental evidence of gelatin crosslinking in presence of sugars and glycerol has yet to be presented. SEC results indicate that average molar masses decrease during gelatin treatment, while FT-IR analyses indicate that gelatins are subject to structural modifications during processing, which can explain the decrease of gelatin solubility after treatment. The results presented here indicate the importance of using SEC techniques to monitor gelatin crosslinking, as they seemingly contradict previously published results that make use of indirect measures for this purpose.
DOI: 10.6084/m9.figshare.7677098.v1
title: Lack of quadruple and quintuple mutant alleles associated with sulfadoxine-pyrimethamine resistance in Plasmodium vivax isolates from Brazilian endemic areas

description: BACKGROUND AND OBJECTIVE Brazil is responsible for a large number of Plasmodium vivax cases in America. Given the emergence of P. vivax parasites resistant to chloroquine and the effectiveness of antifolates in vivax malaria treatment together with a correlation between mutations in P. vivax dhfr and dhps genes and SP treatment failure, the point mutations in these genes were investigated. METHODS Blood samples from 54 patients experiencing vivax malaria symptomatic episodes in the Amazonian Region were investigated. Genomic DNA was extracted using a DNA extraction kit (QIAGENTM). Nested polymerase chain reaction (PCR) amplification was carried out followed by Sanger sequencing to detect single nucleotide polymorphisms (SNPs). FINDINGS All tested isolates showed non-synonymous mutations in pvdhfr gene: 117N (54/54, 100%) and 58R (25/54, 46%). Double mutant allele 58R/117N (FRTNI, 28%) was the most frequent followed by triple mutant alleles (58R/117N/173L, FRTNL, 11%; 58R/61M/117N, FRMNI, 5% 117N/173L, FSTNL, 4%) and quadruple mutant allele (58R/61M/117N/173L, FRMNL, 2%). A single mutation was observed at codon C383G in pvdhps gene (SGKAV, 48%). CONCLUSION No evidence of molecular signatures associated with P. vivax resistance to SP was observed in the Brazilian samples.
DOI: 10.7284/123929
title: TSG (Thermosalinograph) data collected during research cruise BH15-01 using a Sea-Bird SBE-21 instrument system onboard the platform RV Blue Heron

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7677086
title: Drug development for cryptococcosis treatment: what can patents tell us?

description: BACKGROUND Cryptococcosis is one of the most devastating fungal infections in humans. Despite the disease’s clinical importance, current therapy is based on limited antifungals that are either toxic, inefficient, unavailable worldwide, or that quickly lead to resistance. OBJECTIVES The goal of this study was to provide insight into the future of cryptococcosis treatment by describing the patent scenario in this field. METHODS We identified and analysed patent documents revealing compounds with anti-cryptococcal activity supported by experimental evidence. FINDINGS Patenting in this field has been historically low, with an overall tendency of increase since 2012. Most applications are single filings, suggesting that they do not encompass strategic inventions requiring broad protection. Research and development essentially took place in China and the United States, which also represent the main countries of protection. Both academic and corporate institutions contributed to patenting in this field. Universities are the leading actors, with the highest patent family counts. CONCLUSION The low number of patents in this field indicates that efforts to mitigate the unmet needs for cryptococcosis treatment remain insufficient. Without investment to drive research and innovation, patients will likely continue to face inadequate assistance. Given the current scenario characterised by poor funding and low interest for technological development, drug repurposing may be the best alternative for cryptococcosis treatment.
DOI: 10.6084/m9.figshare.7677089
title: Development of a single uredinium inoculation method for Puccinia kuehnii, the causal agent of sugarcane orange rust

description: ABSTRACT The use of resistant varieties is the ideal method to control rusts. Nevertheless, knowing the pathogen’s diversity is fundamental to the success of this measure. Diversity can be analyzed phenotypically and/or genotypically. For phenotypic diversity, the reaction of genotypes is assessed by means of inoculations of the pathogen generally obtained from several uredinia. One handicap of this technique is its impossibility to detect diversity among these uredinia, assuming that they are all homogenous. Therefore, the aim of the present study was to develop a single uredinium technique for Puccinia kuehnii to be used in studies of rust diversity in sugarcane. The comparison between the two inoculation methods was done by employing urediniospores from SP89-1115 on the varieties SP89-1115 (susceptible) and RB975201 (resistant). The adopted design was completely randomized with five and seven replicates, respectively, examining incubation, latency, disease score, and injured area at 14 and 21 days. The two inoculation techniques were significantly equal for the susceptible variety, considering all evaluated parameters. For the resistant genotype, a significant difference was identified in the injured area and such difference did not interfere in the classification of the reaction of the material since values were below 1%. The single uredinium technique developed in this study showed to be reliable since the genotypic profile of the inoculated fungus was similar to that of pathogens from the produced lesions.
DOI: 10.6084/m9.figshare.7677092.v1
title: Improving the reference standard for the diagnosis of canine visceral leishmaniasis: a challenge for current and future tests

description: BACKGROUND Studies aimed at validating canine visceral leishmaniasis diagnostic tests present heterogeneous results regarding test accuracy, partly due to divergences in reference standards used and different infection evolution periods in animals. OBJECTIVE This study aimed to evaluate the accuracy of the rapid test-dual path platform (TR-DPP) (Biomanguinhos®), EIE-Leishmaniose-Visceral-Canina-Biomanguinhos (EIE-LVC) (Biomanguinhos®), enzyme-linked immunosorbent assay (ELISA) rK39 (in-house), and the direct agglutination test (DAT-Canis) against a reference standard comprising parasitological and molecular techniques. METHODS A phase II/III validation study was carried out in sample sera from 123 predominantly asymptomatic dogs living in an area endemic for visceral leishmaniasis. FINDINGS Sixty-nine (56.1%) animals were considered infected according to the reference standard. For each test, the sensitivity and specificity, respectively, were as follows: TR-DPP, 21.74% [confidence interval (CI)95% 13.64% to 32.82%] and 92.59% (CI95% 82.45% to 97.08%); EIE-LVC, 11.59% (CI95% 5.9% to 21.25%) and 90.74% (CI95% 80.09% to 95.98%); ELISA rK39, 37.68% (CI95% 27.18% to 49.48%) and 83.33% (CI95% 71.26% to 90.98%); and DAT-Canis, 18.84% (CI95% 11.35% to 29.61%) and 96.30% (CI95% 87.46% to 98.98%). CONCLUSION We concluded that improving the sensitivity of serum testing for diagnosing asymptomatic dogs must constitute a priority in the process of developing new diagnostic tests to be used in the visceral leishmaniasis control program in Brazil.
DOI: 10.6084/m9.figshare.7677095.v1
title: Preparation of gelatin beads treated with glucose and glycerol

description: Abstract Gelatin is employed in pharmaceutical applications because of its biodegradability, biocompatibility and low toxicity. However, it may be necessary to promote gelatin crosslinking in order to develop drug release systems and extend release times. SEC analyses are used here for the first time to monitor the evolution of molar mass distributions of gelatins during treatment with glycerol and glucose in dispersed media. Unambiguous experimental evidence of gelatin crosslinking in presence of sugars and glycerol has yet to be presented. SEC results indicate that average molar masses decrease during gelatin treatment, while FT-IR analyses indicate that gelatins are subject to structural modifications during processing, which can explain the decrease of gelatin solubility after treatment. The results presented here indicate the importance of using SEC techniques to monitor gelatin crosslinking, as they seemingly contradict previously published results that make use of indirect measures for this purpose.
DOI: 10.6084/m9.figshare.7677080
title: Core-shell magnetic particles obtained by seeded suspension polymerization of acrylic monomers

description: Abstract Core-shell magnetic polymer particles were synthesized by seeded suspension polymerization. The core was made of poly(methyl methacrylate-co-divinylbenzene) and a mixture of magnetite, maghemite and goethite (P(MMA-co-DVB)-M). The shell was composed of poly(glycidyl methacrylate-co-divinylbenzene) (P(GMA-co-DVB)). These particles were characterized by infrared spectrometry (FTIR), thermal analysis (TG), scanning electron microscopy (SEM), dynamic light scattering (DLS) and vibrating sample magnetometry (VSM). The results showed the formation of core-shells with good magnetic properties (≈7.1 emu/g) and good thermal resistance (≈300 ºC). The light scattering experiments showed that the particle size of these materials changed from 5-90 microns (core) to 5-120 microns (core-shell). Scanning electron microscopic images were useful to show the formation of P(GMA-co-DVB) shells on P(MMA- co-DVB)-M cores. The materials synthesized in this work have potential to be modified and employed in magnetic separation processes in the biotech and environmental fields.
DOI: 10.6084/m9.figshare.7677083
title: First isolation of West Nile virus in Brazil

description: BACKGROUND Serological evidence of West Nile virus (WNV) infection has been reported in different regions of Brazil from equine and human hosts but the virus had never been isolated in the country. OBJECTIVES We sought to identify the viral etiology of equine encephalitis in Espírito Santo state. METHODS We performed viral culture in C6/36 cells, molecular detection of WNV genome, histopathology and immunohistochemistry from horse cerebral tissue. We also carried out sequencing, phylogenetic analysis and molecular clock. FINDINGS Histopathologic analysis from horse cerebral tissue showed injury related to encephalitis and WNV infection was confirmed by immunohistochemistry. The virus was detected by reverse transcription quantitative polymerase chain reaction (RT-qPCR) from brain tissue and subsequently isolated in C6/36 cells. WNV full-length genome was sequenced showing the isolated strain belongs to lineage 1a. The molecular clock indicated that Brazilian WNV strain share the same common ancestor that were circulating in US during 2002-2005. MAIN CONCLUSIONS Here we report the first isolation of WNV in Brazil from a horse with neurologic disease, which was clustered into lineage 1a with others US WNV strains isolated in beginning of 2000’s decade.
DOI: 10.6084/m9.figshare.7677089.v1
title: Development of a single uredinium inoculation method for Puccinia kuehnii, the causal agent of sugarcane orange rust

description: ABSTRACT The use of resistant varieties is the ideal method to control rusts. Nevertheless, knowing the pathogen’s diversity is fundamental to the success of this measure. Diversity can be analyzed phenotypically and/or genotypically. For phenotypic diversity, the reaction of genotypes is assessed by means of inoculations of the pathogen generally obtained from several uredinia. One handicap of this technique is its impossibility to detect diversity among these uredinia, assuming that they are all homogenous. Therefore, the aim of the present study was to develop a single uredinium technique for Puccinia kuehnii to be used in studies of rust diversity in sugarcane. The comparison between the two inoculation methods was done by employing urediniospores from SP89-1115 on the varieties SP89-1115 (susceptible) and RB975201 (resistant). The adopted design was completely randomized with five and seven replicates, respectively, examining incubation, latency, disease score, and injured area at 14 and 21 days. The two inoculation techniques were significantly equal for the susceptible variety, considering all evaluated parameters. For the resistant genotype, a significant difference was identified in the injured area and such difference did not interfere in the classification of the reaction of the material since values were below 1%. The single uredinium technique developed in this study showed to be reliable since the genotypic profile of the inoculated fungus was similar to that of pathogens from the produced lesions.
DOI: 10.7284/123948
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise BH15-02 using a RDI VM-150 instrument system onboard the platform RV Blue Heron

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7677080.v1
title: Core-shell magnetic particles obtained by seeded suspension polymerization of acrylic monomers

description: Abstract Core-shell magnetic polymer particles were synthesized by seeded suspension polymerization. The core was made of poly(methyl methacrylate-co-divinylbenzene) and a mixture of magnetite, maghemite and goethite (P(MMA-co-DVB)-M). The shell was composed of poly(glycidyl methacrylate-co-divinylbenzene) (P(GMA-co-DVB)). These particles were characterized by infrared spectrometry (FTIR), thermal analysis (TG), scanning electron microscopy (SEM), dynamic light scattering (DLS) and vibrating sample magnetometry (VSM). The results showed the formation of core-shells with good magnetic properties (≈7.1 emu/g) and good thermal resistance (≈300 ºC). The light scattering experiments showed that the particle size of these materials changed from 5-90 microns (core) to 5-120 microns (core-shell). Scanning electron microscopic images were useful to show the formation of P(GMA-co-DVB) shells on P(MMA- co-DVB)-M cores. The materials synthesized in this work have potential to be modified and employed in magnetic separation processes in the biotech and environmental fields.
DOI: 10.6084/m9.figshare.7677083.v1
title: First isolation of West Nile virus in Brazil

description: BACKGROUND Serological evidence of West Nile virus (WNV) infection has been reported in different regions of Brazil from equine and human hosts but the virus had never been isolated in the country. OBJECTIVES We sought to identify the viral etiology of equine encephalitis in Espírito Santo state. METHODS We performed viral culture in C6/36 cells, molecular detection of WNV genome, histopathology and immunohistochemistry from horse cerebral tissue. We also carried out sequencing, phylogenetic analysis and molecular clock. FINDINGS Histopathologic analysis from horse cerebral tissue showed injury related to encephalitis and WNV infection was confirmed by immunohistochemistry. The virus was detected by reverse transcription quantitative polymerase chain reaction (RT-qPCR) from brain tissue and subsequently isolated in C6/36 cells. WNV full-length genome was sequenced showing the isolated strain belongs to lineage 1a. The molecular clock indicated that Brazilian WNV strain share the same common ancestor that were circulating in US during 2002-2005. MAIN CONCLUSIONS Here we report the first isolation of WNV in Brazil from a horse with neurologic disease, which was clustered into lineage 1a with others US WNV strains isolated in beginning of 2000’s decade.