cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17028/rd.lboro.16722406.v1
title: Supplementary Information Files for Application of a simple unstructured kinetic and cost of goods models to support T-cell therapy manufacture

description: Supplementary Information Files for Application of a simple unstructured kinetic and cost of goods models to support T-cell therapy manufacture<br>Manufacturing of cell therapy products requires sufficient understanding of the cell culture variables and associated mechanisms for adequate control and risk analysis. The aim of this study was to apply an unstructured ordinary differential equationbased model for prediction of T-cell bioprocess outcomes as a function of process input parameters. A series of models were developed to represent the growth of T-cells as a function of time, culture volumes, cell densities, and glucose concentration using data from the Ambr®15 stirred bioreactor system. The models were sufficiently representative of the process to predict the glucose and volume provision required to maintain cell growth rate and quantitatively defined the relationship between glucose concentration, cell growth rate, and glucose utilization rate. The models demonstrated that although glucose is a limiting factor in batch supplied medium, a delivery rate of glucose at significantly less than the maximal specific consumption rate (0.05 mg 1 ? 106 cell h1 ) will adequately sustain cell growth due to a lower glucose Monod constant determining glucose consumption rate relative to the glucose Monod constant determining cell growth rate. The resultant volume and exchange requirements were used as inputs to an operational BioSolve cost model to suggest a cost-effective T-cell manufacturing process with minimum cost of goods per million cells produced and optimal volumetric productivity in a manufacturing settings. These findings highlight the potential of a simple unstructured model of T-cell growth in a stirred tank system to provide a framework for control and optimization of bioprocesses for manufacture.<br>
DOI: 10.15468/gwxe4n
title: Five new genera of the subfamily Psilodercinae (Araneae: Ochyroceratidae) from Southeast Asia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Liu, Chang, Li, Fengyuan, Li, Shuqiang, Zheng, Guo (2017): Five new genera of the subfamily Psilodercinae (Araneae: Ochyroceratidae) from Southeast Asia. Zoological Systematics 42 (4): 395-417, DOI: 10.11865/zs.201717, URL: http://dx.doi.org/10.5281/zenodo.4617038
DOI: 10.5281/zenodo.5543427
title: Data repository - Integrating Degrowth and Efficiency Perspectives to Enable an Emission-neutral Food System

description: Data repository: Integrating Degrowth and Efficiency Perspectives to Enable an Emission-neutral Food System <br> <br> Benjamin Leon Bodirsky, David Meng-Chuen Chen, Isabelle Weindl, Bjoern Soergel, Felicitas <br> Beier, Edna J. Molina Bacca, Franziska Gaupp, Alexander Popp, Hermann Lotze-Campen. In review. Folder structure: 1. Figures: Contains .Rmd notebook for figure production, as well as source data (from model inputs and outputs) 2. Magpie_start_script: Contains start script degrowth.R for replication of model runs. See readme.txt for precise instructions. 3. Scenario_outputs. Entire output folders of model scenario runs.
DOI: 10.25392/leicester.data.14916381
title: Figure 4B Lower AJ 170117

description: This dataset comprises TIF files representing acquisitions in one single molecule experiment. There are two types of file. Each TIF file contains a stack of images representing a time series at a single field of view. An accompanying text file indicates the laser in use at each frame. For example, in the first file, the exposure time for each frame was 500 msec. Illumination was by laser 2 (640 nm, Cy5) from time frames 1 to 48, laser 3 (561 nm, mCherry) from frames 51-348 and laser 1 (488 nm, mEGFP) from frames 349 to 548. Deviation (Dev) represents the deviation of the exiting laser as a result of autofocussing from the point at which all four quarters of a quartered photodiode were irradiated with equal intensity. The experiment was done by Andrew Jobbins.
DOI: 10.25392/leicester.data.14915631
title: Figure 4A Lower left AJ 151006, 150821 & 150908

description: This dataset comprises TIF files representing acquisitions in one single molecule experiment. There are two types of file. Each TIF file contains a stack of images representing a time series at a single field of view. An accompanying text file indicates the laser in use at each frame. For example, in the first file, the exposure time for each frame was 20 msec. Illumination was by laser 2 (640 nm, Cy5) from time frames 1 to 48 and laser 1 (488 nm, mEGFP) from frames 49 to 248. Deviation (Dev) represents the deviation of the exiting laser as a result of autofocussing from the point at which all four quarters of a quartered photodiode were irradiated with equal intensity. The experiment was done by Andrew Jobbins.
DOI: 10.25392/leicester.data.14915589
title: Figure 4A Top left AJ 151006 & 150821

description: This dataset comprises TIF files representing acquisitions in one single molecule experiment. There are two types of file. Each TIF file contains a stack of images representing a time series at a single field of view. An accompanying text file indicates the laser in use at each frame. For example, in the first file, the exposure time for each frame was 100 msec. Illumination was by laser 2 (640 nm, Cy5) from time frames 1 to 48 and laser 1 (488 nm, mEGFP) from frames 49 to 248. Deviation (Dev) represents the deviation of the exiting laser as a result of autofocussing from the point at which all four quarters of a quartered photodiode were irradiated with equal intensity. The experiment was done by Andrew Jobbins.
DOI: 10.25392/leicester.data.14910519
title: Figure 2B right AJ 160223

description: This dataset comprises TIF files representing acquisitions in one single molecule experiment. There are two types of file. Each TIF file contains a stack of images representing a time series at a single field of view. An accompanying text file indicates the laser in use at each frame. For example, in the first file, the exposure time for each frame was 20 msec. Illumination was by laser 2 (640 nm, Cy5) from time frames 3 to 102 and laser 1 (488 nm, mEGFP) from frames 103 to 299. Deviation (Dev) represents the deviation of the exiting laser as a result of autofocussing from the point at which all four quarters of a quartered photodiode were irradiated with equal intensity. The experiment was done by Andrew Jobbins.
DOI: 10.25392/leicester.data.14912451
title: Figure 3B AJ 160310

description: This dataset comprises TIF files representing acquisitions in one single molecule experiment. There are two types of file. Each TIF file contains a stack of images representing a time series at a single field of view. An accompanying text file indicates the laser in use at each frame. For example, in the first file, the exposure time for each frame was 20 msec. Illumination was by laser 2 (640 nm, Cy5) from time frames 1 to 98, laser 3 (561 nm, mCherry) from frames 106-498 and laser 1 (488 nm, mEGFP) from frames 499 to 877. Deviation (Dev) represents the deviation of the exiting laser as a result of autofocussing from the point at which all four quarters of a quartered photodiode were irradiated with equal intensity. The experiment was done by Andrew Jobbins.
DOI: 10.25392/leicester.data.14916240.v1
title: Figure 4B Upper AJ 170315

description: This dataset comprises TIF files representing acquisitions in one single molecule experiment. There are two types of file. Each TIF file contains a stack of images representing a time series at a single field of view. An accompanying text file indicates the laser in use at each frame. For example, in the first file, the exposure time for each frame was 100 msec. Illumination was by laser 2 (640 nm, Cy5) from time frames 1 to 48, laser 3 (561 nm, mCherry) from frames 50-198 and laser 1 (488 nm, mEGFP) from frames 199 to 348. Deviation (Dev) represents the deviation of the exiting laser as a result of autofocussing from the point at which all four quarters of a quartered photodiode were irradiated with equal intensity. The experiment was done by Andrew Jobbins.
DOI: 10.25392/leicester.data.14916240
title: Figure 4B Upper AJ 170315

description: This dataset comprises TIF files representing acquisitions in one single molecule experiment. There are two types of file. Each TIF file contains a stack of images representing a time series at a single field of view. An accompanying text file indicates the laser in use at each frame. For example, in the first file, the exposure time for each frame was 100 msec. Illumination was by laser 2 (640 nm, Cy5) from time frames 1 to 48, laser 3 (561 nm, mCherry) from frames 50-198 and laser 1 (488 nm, mEGFP) from frames 199 to 348. Deviation (Dev) represents the deviation of the exiting laser as a result of autofocussing from the point at which all four quarters of a quartered photodiode were irradiated with equal intensity. The experiment was done by Andrew Jobbins.
DOI: 10.25392/leicester.data.14915445
title: Figure 3C AJ 161125

description: This dataset comprises TIF files representing acquisitions in one single molecule experiment. There are two types of file. Each TIF file contains a stack of images representing a time series at a single field of view. An accompanying text file indicates the laser in use at each frame. For example, in the first file, the exposure time for each frame was 100 msec. Illumination was by laser 2 (640 nm, Cy5) from time frames 1 to 48, laser 3 (561 nm, mCherry) from frames 50-248 and laser 1 (488 nm, mEGFP) from frames 103 to 242. Deviation (Dev) represents the deviation of the exiting laser as a result of autofocussing from the point at which all four quarters of a quartered photodiode were irradiated with equal intensity. The experiment was done by Andrew Jobbins.
DOI: 10.25392/leicester.data.14915532
title: Figure 3D AJ 160121

description: This dataset comprises TIF files representing acquisitions in one single molecule experiment. There are two types of file. Each TIF file contains a stack of images representing a time series at a single field of view. An accompanying text file indicates the laser in use at each frame. For example, in the first file, the exposure time for each frame was 100 msec. Illumination was by laser 3 (561 nm, mCherry) from time frames 1 to 298 and laser 1 (488 nm, mEGFP) from frames 299 to 599. Deviation (Dev) represents the deviation of the exiting laser as a result of autofocussing from the point at which all four quarters of a quartered photodiode were irradiated with equal intensity. The experiment was done by Andrew Jobbins.
DOI: 10.25392/leicester.data.14910390
title: Figure 2A right RW 120604

description: This dataset comprises TIF files representing acquisitions in one single molecule experiment. There are two types of file. Each TIF file contains a stack of images representing a time series at a single field of view. An accompanying text file indicates the laser in use at each frame. For example, in the first file, the exposure time for each frame was 100 msec. Illumination was by laser 2 (640 nm, Cy5) from time frames 1 to 48 and laser 1 (488 nm, mEGFP) from frames 49 to 665. Deviation (Dev) represents the deviation of the exiting laser as a result of autofocussing from the point at which all four quarters of a quartered photodiode were irradiated with equal intensity. The experiment was done by Robert Weinmeister.
DOI: 10.25392/leicester.data.14893341
title: Figure 2B left AJ 160628 & 160718

description: This dataset comprises TIF files representing acquisitions in one single molecule experiment. There are two types of file. Each TIF file contains a stack of images representing a time series at a single filed of view. An accompanying text file indicates the laser in use at each frame. In this case, the exposure time for each frame was 20 msec. Illumination was by laser 2 (640 nm, Cy5) from time frames 1 to 98 and laser 1 (488 nm, mEGFP) from frames 99 to 599. Deviation (Dev) represents the deviation of the exiting laser as a result of autofocussing from the point at which all four quarters of a quartered photodiode were irradiated with equal intensity. The experiment was done by Andrew Jobbins.
DOI: 10.25392/leicester.data.14893413
title: Figure 2B middle AJ 160628, 160705, 160718

description: This dataset comprises TIF files representing acquisitions in one single molecule experiment. There are two types of file. Each TIF file contains a stack of images representing a time series at a single field of view. An accompanying text file indicates the laser in use at each frame. In this case, the exposure time for each frame was 20 msec. Illumination was by laser 2 (640 nm, Cy5) from time frames 3 to 102 and laser 1 (488 nm, mEGFP) from frames 103 to 242. Deviation (Dev) represents the deviation of the exiting laser as a result of autofocussing from the point at which all four quarters of a quartered photodiode were irradiated with equal intensity. The experiment was done by Andrew Jobbins.<br>
DOI: 10.25392/leicester.data.14910243
title: Figure 2A left RW 120507 & 120118

description: This dataset comprises TIF files representing acquisitions in one single molecule experiment. There are two types of file. Each TIF file contains a stack of images representing a time series at a single field of view. An accompanying text file indicates the laser in use at each frame. For example, in the first file, the exposure time for each frame was 100 msec. Illumination was by laser 2 (640 nm, Cy5) from time frames 1 to 48 and laser 1 (488 nm, mEGFP) from frames 49 to 463. Deviation (Dev) represents the deviation of the exiting laser as a result of autofocussing from the point at which all four quarters of a quartered photodiode were irradiated with equal intensity. The experiment was done by Robert Weinmeister
DOI: 10.25392/leicester.data.14873049.v1
title: Figure 5A SC 2D 1H-15N HSQC spectra

description: Excel spreadsheet containing values used for comparison of HSQC spectra of SRSF1deltaRS before and after addition of SL3
DOI: 10.25392/leicester.data.14873049
title: Figure 5A SC 2D 1H-15N HSQC spectra

description: Excel spreadsheet containing values used for comparison of HSQC spectra of SRSF1deltaRS before and after addition of SL3
DOI: 10.25392/leicester.data.14873091.v1
title: Figure 4E Chemical shift data

description: Spreadsheet of values for chemical shift perturbations of SRSF1 methyl groups in the presence of U1 snRNP, ssRNA or U1 snRNA SL3
DOI: 10.25392/leicester.data.14873091
title: Figure 4E Chemical shift data

description: Spreadsheet of values for chemical shift perturbations of SRSF1 methyl groups in the presence of U1 snRNP, ssRNA or U1 snRNA SL3
DOI: 10.5281/zenodo.5543918
title: Exploring Social Metacognition simulation data

description: These datasets are generated by running computer simulation code associated with the [Exploring Social Metacognition](https://github.com/mjaquiery/oxforddown) thesis. These datasets are included to save time when creating the thesis -- the code will first look for locally cached files, then download these files to the cache, and finally try to regenerate these data itself.
DOI: 10.5281/zenodo.5543917
title: Exploring Social Metacognition simulation data

description: These datasets are generated by running computer simulation code associated with the [Exploring Social Metacognition](https://github.com/mjaquiery/oxforddown) thesis. These datasets are included to save time when creating the thesis -- the code will first look for locally cached files, then download these files to the cache, and finally try to regenerate these data itself.
DOI: 10.15468/3638u9
title: The genus Neohirasea Rehn (Phasmatodea: Diapheromeridae: Necrosciinae) from Vietnam

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ho, Wai-Chun George (2018): The genus Neohirasea Rehn (Phasmatodea: Diapheromeridae: Necrosciinae) from Vietnam. Zoological Systematics 43 (1): 37-51, DOI: 10.11865/zs.201804, URL: http://zoobank.org/9d2b6952-9f5f-4f3a-8adb-978c4a33dad4
DOI: 10.5281/zenodo.5536917
title: Improving Artificial Teachers by Considering How People Learn and Forget: Dataset

description: This dataset contains the results of the experiment described in Nioche et al. (2021). This dataset contains 4 data files: <em>data.csv</em>: the main data file. <em>stimuli.csv:</em> the description/listing of the stimuli. <em>demographic_info.csv</em>: the demographic information about the users. <em>data_incl_preliminary_exp.csv</em>: an additional data file that includes the user of the preliminary experiments The main data file contains the logs of 53 different users using a self-teaching application for one week. The goal of the users was to learn the English meaning of Japanese kanji. Each user completed between 1370 trials and 1608 trials. Each user saw between 85 and 204 characters. Two additional files are also joint to the data files: <em>info.ipynb</em>: A Jupyter notebook that provides information about each data file, a few descriptive plots, and an example of data manipulation. <em>info.pdf: </em>A pdf rendering of the notebook. If you use this dataset, please refer to it by citing Nioche et al. (2021).
description: {"references": ["Aurelien Nioche, Pierre-Alexandre Murena, Carlos de la Torre-Ortiz, and Antti Oulasvirta. 2021. Improving Artificial Teachers by Considering How People Learn and Forget. In 26th International Conference on Intelligent User Interfaces (IUI '21). Association for Computing Machinery, New York, NY, USA, 445\u2013453. DOI:https://doi.org/10.1145/3397481.3450696"]}
DOI: 10.5281/zenodo.5536916
title: Improving Artificial Teachers by Considering How People Learn and Forget: Dataset

description: This dataset contains the results of the experiment described in Nioche et al. (2021). This dataset contains 4 data files: <em>data.csv</em>: the main data file. <em>stimuli.csv:</em> the description/listing of the stimuli. <em>demographic_info.csv</em>: the demographic information about the users. <em>data_incl_preliminary_exp.csv</em>: an additional data file that includes the user of the preliminary experiments The main data file contains the logs of 53 different users using a self-teaching application for one week. The goal of the users was to learn the English meaning of Japanese kanji. Each user completed between 1370 trials and 1608 trials. Each user saw between 85 and 204 characters. Two additional files are also joint to the data files: <em>info.ipynb</em>: A Jupyter notebook that provides information about each data file, a few descriptive plots, and an example of data manipulation. <em>info.pdf: </em>A pdf rendering of the notebook. If you use this dataset, please refer to it by citing Nioche et al. (2021).
description: {"references": ["Aurelien Nioche, Pierre-Alexandre Murena, Carlos de la Torre-Ortiz, and Antti Oulasvirta. 2021. Improving Artificial Teachers by Considering How People Learn and Forget. In 26th International Conference on Intelligent User Interfaces (IUI '21). Association for Computing Machinery, New York, NY, USA, 445\u2013453. DOI:https://doi.org/10.1145/3397481.3450696"]}
DOI: 10.5281/zenodo.5524854
title: Reproduction package for the paper "Multi-dimensional population modelling using frbpoppy: Magnetars can produce the observed fast radio burst sky"

description: This is a basic reproduction package for the paper "Multi-dimensional population modelling using frbpoppy: Magnetars can produce the observed fast radio burst sky" by David Gardenier & Joeri van Leeuwen (2021). * arXiv: arXiv:2012.06396<br> * DOI: 10.1051/0004-6361/202040119
description: The research leading to these results has received funding from the European Research Council under the European Union's Seventh Framework Programme (FP/2007-2013)/ERC Grant Agreement n. 617199 ('ALERT'); from Vici research programme 'ARGO' with project number 639.043.815, financed by the Netherlands Organisation for Scientific Research (NWO); and from the Netherlands Research School for Astronomy (NOVA4-ARTS).
DOI: 10.5281/zenodo.5524853
title: Reproduction package for the paper "Multi-dimensional population modelling using frbpoppy: Magnetars can produce the observed fast radio burst sky"

description: This is a basic reproduction package for the paper "Multi-dimensional population modelling using frbpoppy: Magnetars can produce the observed fast radio burst sky" by David Gardenier & Joeri van Leeuwen (2021). * arXiv: arXiv:2012.06396<br> * DOI: 10.1051/0004-6361/202040119
description: The research leading to these results has received funding from the European Research Council under the European Union's Seventh Framework Programme (FP/2007-2013)/ERC Grant Agreement n. 617199 ('ALERT'); from Vici research programme 'ARGO' with project number 639.043.815, financed by the Netherlands Organisation for Scientific Research (NWO); and from the Netherlands Research School for Astronomy (NOVA4-ARTS).
DOI: 10.6084/m9.figshare.12782138
title: Modifiable set of ESRI ArcMap-10 shape-lyr-style files implementing the Romanian color standard for soil type map legends

description: In order to use the Romanian color standard for soil type map legends, a dataset of ESRI ArcMap-10 files, consisting of a shapefile set (.dbf, .shp, .shx, .sbn, and .sbx files), four different .lyr files, and three different .style files (https://desktop.arcgis.com/en/arcmap/10.3/map/ : saving-layers-and-layer-packages, about-creating-new-symbols, what-are-symbols-and-styles-), have been prepared. The shapefile set is not a “real” georeferenced layer/coverage; it is designed only to handle all the instants of soil types from the standard legend. This legend contains 67 standard items: 63 proper colors (different color hues, each of them having, generally, 2 - 4 degrees of lightness and/or chroma, four shades of grey, and white color), and four hatching patterns on white background. The “color difference DE*<sub>ab</sub>” between any two legend colors, calculated with the color perceptually-uniform model CIELAB, is greater than 10 units, thus ensuring acceptably-distinguishable colors in the legend. The 67 standard items are assigned to 60 main soils existing in Romania, four main nonsoils, and three special cases of unsurveyed land. The soils are specified in terms of the current Romanian system of soil taxonomy, SRTS-2012+, and of the international system WRB-2014. The four different .lyr files presented here are: <i>legend_soilcode_srts_wrb.lyr</i>, <i>legend_soilcode_wrb.lyr</i>, <i>legend_colorcode_srts_wrb.lyr,</i> and <i>legend_colorcode_wrb.lyr</i>. The first two of them are built using as value field the “Soil_codes” field, and as labels (explanation texts) the “Soil_name” field (storing the soil types according to SRTS/WRB classification), respectively, the “WRB” field (the soil type according to WRB classification), while the last two .lyr files are built using as value field the “color_code” field (storing the color codes) and as labels the soil name in SRTS and WRB, respectively, in WRB classification. In order to exemplify how the legend is displayed, two .jpg files are also presented: <i>legend_soil_srts_wrb.jpg </i>and <i>legend_color_wrb.jpg</i>. The first displays the legend (symbols and labels) according to the SRTS classification order, the second according to the WRB classification. The three different .style files presented here are: <i>soil_symbols.style</i>, <i>wrb_codes.style, </i>and <i>color_codes.style</i>. They use as name the soil acronym in SRTS classification, soil acronym in WRB classification, and, respectively, the color code. The presented file set may be used to directly implement the Romanian color standard in digital soil type map legends, or may be adjusted/modified to other specific requirements.