cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28281065
title: Raw data-Molecular epidemiology of carbapenem-resistant hypervirulent Klebsiella pneumoniae Risk factors and resistance mechanism of ceftazidimeavibactam in China.xlsx

description: The high morbidity and mortality rates associated with carbapenem-resistant hypervirulent <i>Klebsiella pneumoniae</i>(CR-hvKP) have become a global public health problem. This study explored the optimal concentration of a novel β-lactam/inhibitor and the resistance mechanism of ceftazidime/avibactam of CR-hvKP. We analyzed the whole genome sequence and epidemiological data of 81 carbapenem-resistant <i>Klebsiella pneumoniae</i>(<i>KP</i>) strains and conducted sensitivity experiments to explore the optimal concentration of carbapenem-resistant <i>Klebsiella pneumoniae</i>(CRKP).We verified the resistance and virulence genes of CRKP<i> </i>using polymerase chain reaction and compared virulence between CRKP and carbapenem-resistant-non-hypervirulent <i>Klebsiella pneumoniae</i>(CR-non-hvKP) through <i>Galleria mellonella</i> assays. The prevalent types of multilocus sequence typing in our CRKP<i> </i>strains were ST11 (69.14%, 56/81). ST11-K64-O1/O2v1 has become an epidemic type in our hospital, with drug-resistance genes dominated by bla<sub>KPC-2</sub> (90.12%, 73/81). Ceftazidime/avibactam has better antibacterial effects on CRKP, and its resistance is mainly mediated by a resistance plasmid containing the bla<sub>KPC-2</sub> gene. 52 CR-hvKP strains carry the bla<sub>KPC-2</sub>, with a high detection rate of siderophore. Further research has shown that the genetic environment of the bla<sub>KPC-2</sub> contains TnpR_Tn3 and ISKpn27 upstream and ISKpn6 insertion sequences downstream. <i>Galleria mellonella</i> revealed that the survival rate of CR-hvKP was lower than that of CR-non-hvKP. Antibiotic usage time, Carbapenem antibiotic exposure, and Malignant tumors were independent risk factors for CR-hvKP infection. The spread of CR-hvKP strains is alarming, necessitating molecular monitoring of hypervirulent strains and strengthening the nosocomial infection prevention and control measures. Antibiotics should be used reasonably based on patients' infection status and local epidemiological data.
DOI: 10.6084/m9.figshare.28281065.v1
title: Raw data-Molecular epidemiology of carbapenem-resistant hypervirulent Klebsiella pneumoniae Risk factors and resistance mechanism of ceftazidimeavibactam in China.xlsx

description: The high morbidity and mortality rates associated with carbapenem-resistant hypervirulent <i>Klebsiella pneumoniae</i>(CR-hvKP) have become a global public health problem. This study explored the optimal concentration of a novel β-lactam/inhibitor and the resistance mechanism of ceftazidime/avibactam of CR-hvKP. We analyzed the whole genome sequence and epidemiological data of 81 carbapenem-resistant <i>Klebsiella pneumoniae</i>(<i>KP</i>) strains and conducted sensitivity experiments to explore the optimal concentration of carbapenem-resistant <i>Klebsiella pneumoniae</i>(CRKP).We verified the resistance and virulence genes of CRKP<i> </i>using polymerase chain reaction and compared virulence between CRKP and carbapenem-resistant-non-hypervirulent <i>Klebsiella pneumoniae</i>(CR-non-hvKP) through <i>Galleria mellonella</i> assays. The prevalent types of multilocus sequence typing in our CRKP<i> </i>strains were ST11 (69.14%, 56/81). ST11-K64-O1/O2v1 has become an epidemic type in our hospital, with drug-resistance genes dominated by bla<sub>KPC-2</sub> (90.12%, 73/81). Ceftazidime/avibactam has better antibacterial effects on CRKP, and its resistance is mainly mediated by a resistance plasmid containing the bla<sub>KPC-2</sub> gene. 52 CR-hvKP strains carry the bla<sub>KPC-2</sub>, with a high detection rate of siderophore. Further research has shown that the genetic environment of the bla<sub>KPC-2</sub> contains TnpR_Tn3 and ISKpn27 upstream and ISKpn6 insertion sequences downstream. <i>Galleria mellonella</i> revealed that the survival rate of CR-hvKP was lower than that of CR-non-hvKP. Antibiotic usage time, Carbapenem antibiotic exposure, and Malignant tumors were independent risk factors for CR-hvKP infection. The spread of CR-hvKP strains is alarming, necessitating molecular monitoring of hypervirulent strains and strengthening the nosocomial infection prevention and control measures. Antibiotics should be used reasonably based on patients' infection status and local epidemiological data.
DOI: 10.5281/zenodo.14739993
title: GARDENS IN LITERATURE: A SYMBOL OF GROWTH, BEAUTY, AND MYSTERY
DOI: 10.5281/zenodo.14739994
title: GARDENS IN LITERATURE: A SYMBOL OF GROWTH, BEAUTY, AND MYSTERY
DOI: 10.5281/zenodo.10034539
title: Datasets underlying the paper Frozen by heating

description: datasets_repo.zip


Datasets underlying Frozen by heating: temperature controlled dynamic states in droplet microswimmers, arXiv:2303.13442


Source data for all figures in the manuscript. Figures were produced by Python/matplotlib, a corresponding Jupyter notebook is included in the root folder. Raw video data are available from the authors on reasonable request.


 


code.zip


Numerical code underlying the simulation data in Fig. 4a.
DOI: 10.5281/zenodo.11447658
title: Datasets underlying the paper Frozen by heating

description: datasets_repo.zip


Datasets underlying Frozen by heating: temperature controlled dynamic states in droplet microswimmers, arXiv:2303.13442


Source data for all figures in the manuscript. Figures were produced by Python/matplotlib, a corresponding Jupyter notebook is included in the root folder. Raw video data are available from the authors on reasonable request.


 


code.zip


Numerical code underlying the simulation data in Fig. 4a.
DOI: 10.5281/zenodo.13326877
title: Datasets underlying the paper Frozen by heating

description: datasets_repo.zip


Datasets underlying Frozen by heating: temperature controlled dynamic states in droplet microswimmers, arXiv:2303.13442


Source data for all figures in the manuscript. Figures were produced by Python/matplotlib, a corresponding Jupyter notebook is included in the root folder. Raw video data are available from the authors on reasonable request.


 


code.zip


Numerical code underlying the simulation data in Fig. 4a.
DOI: 10.5281/zenodo.14739984
title: Datasets underlying the paper Frozen by heating

description: datasets_repo.zip


Datasets underlying Frozen by heating: temperature controlled dynamic states in droplet microswimmers, arXiv:2303.13442


Source data for all figures in the manuscript. Figures were produced by Python/matplotlib, a corresponding Jupyter notebook is included in the root folder. Raw video data are available from the authors on reasonable request.


 


code.zip


Numerical code underlying the simulation data in Fig. 4a.
DOI: 10.5281/zenodo.7818660
title: Datasets underlying the paper Frozen by heating

description: datasets_repo.zip


Datasets underlying Frozen by heating: temperature controlled dynamic states in droplet microswimmers, arXiv:2303.13442


Source data for all figures in the manuscript. Figures were produced by Python/matplotlib, a corresponding Jupyter notebook is included in the root folder. Raw video data are available from the authors on reasonable request.


 


code.zip


Numerical code underlying the simulation data in Fig. 4a.
DOI: 10.5281/zenodo.7818661
title: Datasets underlying the paper Frozen by heating

description: datasets_repo.zip Datasets underlying Arrested on heating: controlling the motility of active droplets by temperature, arXiv:2303.13442 Source data for all figures in the manuscript. Figures were produced by Python/matplotlib, a corresponding Jupyter notebook is included in the root folder. Raw video data are available from the authors on reasonable request. code.zip Numerical code underlying the simulation data in Fig. 4a.
DOI: 10.5281/zenodo.8211270
title: Datasets underlying the paper Frozen by heating

description: datasets_repo.zip Datasets underlying Frozen by heating: temperature controlled dynamic states in droplet microswimmers, arXiv:2303.13442 Source data for all figures in the manuscript. Figures were produced by Python/matplotlib, a corresponding Jupyter notebook is included in the root folder. Raw video data are available from the authors on reasonable request. code.zip Numerical code underlying the simulation data in Fig. 4a.
DOI: 10.15468/dl.kdetu8
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Batrachochytrium dendrobatidis Longcore, Pessier & D.K.Nichols"
 ]
}

 The dataset's 1 records were derived from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002197-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gwcdwx
title: Occurrence Download

description: A dataset containing 105523 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Catálogo Florístico Histórico de Navarra. Gobierno de Navarra"
 ]
}

 The dataset includes 105523 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002198-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18112/openneuro.ds005226.v1.0.1
title: An fMRI Datasets for Image Interpretation Tasks Under Different Occluded Conditions
DOI: 10.15468/dl.ztggky
title: Occurrence Download

description: A dataset containing 31175 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Ginglymostoma cirratum (Bonnaterre, 1788)"
 ]
}

 The dataset includes 31175 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002203-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14739956
title: Diel changes in the expression of a marker gene and candidate genes for intracellular amorphous CaCO3 biomineralization in Microcystis

description: Data, supplementary figures and supplementary tables of the paper by Bruley et al., published in PCI Microbiology and entitled "Diel changes in the expression of a marker gene and candidate genes for intracellular amorphous CaCO3 biomineralization in Microcystis". For a detail about the data and supplementary file content and description, please refer to the readme file
DOI: 10.5281/zenodo.14739957
title: Diel changes in the expression of a marker gene and candidate genes for intracellular amorphous CaCO3 biomineralization in Microcystis

description: Data, supplementary figures and supplementary tables of the paper by Bruley et al., published in PCI Microbiology and entitled "Diel changes in the expression of a marker gene and candidate genes for intracellular amorphous CaCO3 biomineralization in Microcystis". For a detail about the data and supplementary file content and description, please refer to the readme file
DOI: 10.15468/dl.t7dau8
title: Occurrence Download

description: A dataset containing 242196 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Swiss National Spider Databank"
 ]
}

 The dataset includes 242196 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002195-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/10579732
title: Equiarea Shape from Template Deformations Dataset
DOI: 10.15468/dl.qhhuxa
title: Occurrence Download

description: A dataset containing 993 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is ROC RSPB Farmland Species Survey Dataset"
 ]
}

 The dataset includes 993 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002204-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28281092
title: 에르되시 - 스트라우스 추측.docx

description: 에르되시 스트라우스 추측​ 증명
DOI: 10.15468/dl.m8mnvz
title: Occurrence Download

description: A dataset containing 440868 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Geometry POLYGON((-50.13808 -6.50764,-43.50415 -6.50764,-43.50415 0.11226,-50.13808 0.11226,-50.13808 -6.50764))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 440868 records from 642 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002196-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cg7h7z
title: Occurrence Download

description: A dataset containing 811640 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "TaxonKey is Aegithalos caudatus (Linnaeus, 1758)"
 ]
}

 The dataset includes 811640 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002183-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5cr843
title: Occurrence Download

description: A dataset containing 201678 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salamandra Garsault, 1764"
 ]
}

 The dataset includes 201678 records from 1936 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002189-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5ws8hz09
title: MassIVE MSV000095459 - Branched-chain amino acid catabolism promotes ovarian cancer cell proliferation via phosphorylation of mTOR
title: Slides were placed in a humidified incubator at 37C and 5% CO2 and cocultured for 4 days. After 4 days, the 8-well chamber was detached from the glass slide, and omental tissue was removed with a razor blade prior to desiccation. Agarose cocultures were desiccated on the ITO-glass slide in an incubator at 30C on a home-built spinning apparatus for 4 hours. (Lusk JASMS 2022) MALDI matrices alpha-cyano-4-hydroxycinnamic acid (CHCA (98%), C2020, Sigma-Adlrich) and 2,5-dihydroxybenzoic acid (DHB (98%), 149357, Sigma-Aldrich) were recrystallized in-house as previously described. The MALDI matrix used for MSI was a 50:50 mixture of CHCA:DHB at 10 mg/mL dissolved in 90:10 ACN:H2O with 0.1% TFA applied using a TM sprayer (HTX Imaging). Before MSI analysis, slides were scanned using Tissue Scout (Bruker Daltonics) for the initial screen and Epson Perfection V850 Pro for subsequent experiments. Scanned images were used to guide irradiation. MSI data was acquired using timsControl v2.0.51.0_9669_1571 and flexImaging 5.1 software for the initial screen, fleximaging 7.4 for subsequent experiments at 100 micron spatial resolution on a timsTOF fleX mass spectrometer (Bruker Daltonics). Data were collected using a mass range of 50-1500 Da in positive ion mode with the laser width set to 100 micron imaging and the laser power set to 90%. At each raster point, 1,000 laser shots were delivered at a frequency of 1,000 Hz. The instrument was calibrated manually using phosphorus red prior to imaging. MSI data was analyzed, and statistical analysis was performed using SCiLS Lab version 2023c core (Bruker Daltonics). All spectra were normalized to the root mean square (RMS).
DOI: 10.5281/zenodo.11087487
title: Contributing to open-source projects in refactoring code smells: A practical experience in teaching Software Maintenance

description: Code smells are inadequate code structures that can harm quality and maintainability. To remove these deficient structures, developers use refactoring techniques. Refactoring helps code be easier to understand and modify by eliminating potential problems and improving internal quality attributes. Most refactoring activities are usually performed manually and undisciplined, which can cause code degradation. Concepts, practices, software refactoring tools, and code smells are rarely discussed in undergraduate computing courses. This problem is reflected in the software industry, which generally does not use refactoring practices to improve code readability and maintainability. In this context, we present in this paper an experience report on teaching the practice of code smell refactoring and the impact on internal quality attributes through contribution to Open Source Software (OSS) projects. The study was carried out in two undergraduate classes in Software Quality and Software Maintenance courses, and our main results were that: (i) students observed improvements in code quality after refactoring smells; (ii) they noted connections between refactoring, testing, and debugging; (iii) they felt less confident refactoring code spread across multiple files; (iv) code complexity hindered their ability to refactor; (v) the choice of refactoring techniques depended on factors like project structure and personal preference, with techniques often used in combination to address a single smell; (vi) most refactorings decrease internal quality attributes; (vii) contributing to OSS projects fostered a sense of programmer growth; and, (viii) project clarity was linked to its potential for collaboration.
DOI: 10.15468/dl.bz4vc4
title: Occurrence Download

description: A dataset containing 527 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.43_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Pinus strobus L."
 ]
}

 The dataset includes 527 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038404-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wvnty4
title: Occurrence Download

description: A dataset containing 1258 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is CMC_ornithology_GRC"
 ]
}

 The dataset includes 1258 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038405-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13010596
title: Contributing to open-source projects in refactoring code smells: A practical experience in teaching Software Maintenance

description: Code smells are inadequate code structures that can harm quality and maintainability. To remove these deficient structures, developers use refactoring techniques. Refactoring helps code be easier to understand and modify by eliminating potential problems and improving internal quality attributes. Most refactoring activities are usually performed manually and undisciplined, which can cause code degradation. Concepts, practices, software refactoring tools, and code smells are rarely discussed in undergraduate computing courses. This problem is reflected in the software industry, which generally does not use refactoring practices to improve code readability and maintainability. In this context, we present in this paper an experience report on teaching the practice of code smell refactoring and the impact on internal quality attributes through contribution to Open Source Software (OSS) projects. The study was carried out in two undergraduate classes in Software Quality and Software Maintenance courses, and our main results were that: (i) students observed improvements in code quality after refactoring smells; (ii) they noted connections between refactoring, testing, and debugging; (iii) they felt less confident refactoring code spread across multiple files; (iv) code complexity hindered their ability to refactor; (v) the choice of refactoring techniques depended on factors like project structure and personal preference, with techniques often used in combination to address a single smell; (vi) most refactorings decrease internal quality attributes; (vii) contributing to OSS projects fostered a sense of programmer growth; and, (viii) project clarity was linked to its potential for collaboration.
DOI: 10.15468/dl.ae39ub
title: Occurrence Download

description: A dataset containing 1118715 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Benin"
 ]
}

 The dataset includes 1118715 records from 526 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038402-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g47kue
title: Occurrence Download

description: A dataset containing 135537 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Togo"
 ]
}

 The dataset includes 135537 records from 424 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038403-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6ypf3m
title: Occurrence Download

description: A dataset containing 154 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Reithrodontomys spectabilis Jones & Lawlor, 1965"
 ]
}

 The dataset includes 154 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038406-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.