cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ebtmtj
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Blicca bjoerkna",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1840",
 "Year is less than or equal to 1844"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008456-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rzuh7w
title: Occurrence Download

description: A dataset containing 460 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Veronica jacquinii",
 "Country is one of (Albania, Austria, Bosnia and Herzegovina, Belgium, Bulgaria, Belarus, Switzerland, Cyprus, Czechia, Germany, Denmark, Estonia, Spain, Finland, France, United Kingdom of Great Britain and Northern Ireland, Greece, Croatia, Hungary, Ireland, Italy, Lithuania, Luxembourg, Latvia, Moldova, Republic of, Montenegro, North Macedonia, Malta, Netherlands, Norway, Poland, Portugal, Romania, Serbia, Sweden, Slovenia, Slovakia, Türkiye, Ukraine, Kosovo)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 460 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008457-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nncpga
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Blicca bjoerkna",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1845",
 "Year is less than or equal to 1849"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008459-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yc537p
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pycnocycla cespitosa",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008460-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z2zzxd
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Blicca bjoerkna",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1850",
 "Year is less than or equal to 1854"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008463-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b68jqf
title: Occurrence Download

description: A dataset containing 165 records in GBIF matching the query:
SELECT
 '221' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 8.098015256935714
 AND decimalLatitude &lt;= 12.166598047573723
 AND decimalLongitude &gt;= 45.17848318098086
 AND decimalLongitude &lt;= 50.59334038100958
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 165 records were derived from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008449-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3vydfj
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quemisia gravis"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008466-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eyqmg6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pycnocycla flabellifolia",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008464-260120142942310/datasets/export for details.
DOI: 10.5281/zenodo.7654683
title: Self-Annotated Wearable Activity Data

description: Our dataset contains 2 weeks of approx. 8-9 hours of acceleration data per day from 11 participants wearing a Bangle.js Version 1 smartwatch with our firmware installed.

The dataset contains annotations from  4 different commonly used annotation methods utilized in user studies that focus on in-the-wild data. These methods can be grouped in user-driven, in situ annotations - which are performed before or during the activity is recorded - and recall methods - where participants annotate their data in hindsight at the end of the day.

The participants had the task to label their activities using (1) a button located on the smartwatch, (2) the activity tracking app Strava, (3) a (hand)written diary and (4) a tool to visually inspect and label activity data, called MAD-GUI. Methods (1)-(3) are used in both weeks, however method (4) is introduced in the beginning of the second study week.

The accelerometer data is recorded with 25 Hz, a sensitivity of ±8g and is stored in a csv format. Labels and raw data are not yet combined. You can either write your own script to label the data or follow the instructions in our corresponding Github repository.

The following unique classes are included in our dataset:

laying, sitting, walking, running, cycling, bus_driving, car_driving, vacuum_cleaning, laundry, cooking, eating, shopping, showering, yoga, sport, playing_games, desk_work, guitar_playing, gardening, table_tennis, badminton, horse_riding.

However, many activities are very participant specific and therefore only performed by one of the participants.

The labels are also stored as a .csv file and have the following columns:

week_day, start, stop, activity, layer

Example:

week2_day2,10:30:00,11:00:00,vacuum_cleaning,d

The layer columns specifies which annotation method was used to set this label.

The following identifiers can be found in the column:

b: in situ button

a: in situ app

d: self-recall diary

g: time-series recall labelled with a the MAD-GUI

Please download our paper for more information: 

A matter of annotation: an empirical study on in situ and self-recall activity annotations from wearable sensors
DOI: 10.15468/dl.8dd9jg
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Blicca bjoerkna",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1855",
 "Year is less than or equal to 1859"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008468-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jwxazn
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhodosciadium purpureum",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 27 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008469-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5vt1h37v
title: MassIVE MSV000100570 - Native yeast kinetochore structures identify an essential inner kinetochore interaction.
title: Kinetochores were purified from Saccharomyces cerevisiae (W303) cell lysate after being treated with benzonase and sucrose gradient to remove contaminant proteins. The endogenous AME1 kinetochore gene was C-terminally tagged with 3xM3DK. Harvested yeast were resuspended in Buffer H (25 mM HEPES pH 8.0, 150 mM KCl, 2 mM MgCl2, 0.1 mM EDTA pH 8.0, 0.1% NP-40, 15% glycerol) supplemented with protease inhibitors, phosphatase inhibitors, and 2 mM DTT. After resuspension and re-spinning, yeast pellets were frozen in liquid nitrogen and lysed using a Freezer Mill (SPEX, Metuchen NJ). Lysate was clarified via tabletop centrifugation at maximum speed for 30 minutes. The supernatant was pooled in ultracentrifugation tubes with 3mL sucrose gradient cushion from 25% to 40%. The lysate was ultra spun overnight at 27,000RPM and the clear layer of lysate was extracted with a syringe. This extract was incubated with 625ng/mL 500bp CEN3 DNA at room temperature for 90 minutes and magnetic a-M3DK antibody conjugated Dynabeads (Invitrogen, Waltham MA) were added and incubated for 90 minutes at 4 C with rotation. Dynabeads were washed with Buffer L (25 mM HEPES pH 8.0, 175 mM KGlutamate, 6 mM Mg(OAc)2, 0.1 mM EDTA pH 7.6, 0.5 mM EGTA-KOH, 0.1% NP-40, 15% glycerol, pH7.6) for 5 times (the last 2 washes omitting NP-40, glycerol and phosphatase inhibitors). For mass spectrometry, kinetochores were eluted from Dynabeads with 0.2% RapiGest (Waters Corporation, Milford MA) in 50 mM HEPES pH 8.0.
DOI: 10.15468/dl.ecy8cg
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Blicca bjoerkna",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1860",
 "Year is less than or equal to 1864"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008472-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ffpqx5
title: Occurrence Download

description: A dataset containing 374 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ridolfia segetum",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 374 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008473-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28269434
title: CKDu Sri Lanka Kidney non-human RNA

description: Methods Here, we performed a prospective observational cohort study of symptomatic patients presenting with a feverish syndrome at an outpatient clinic in a CKDu-endemic region of Sri Lanka. Between June 2018 and November 2021, a cohort of 151 patients presenting with a feverish syndrome to an outpatient clinic in a CKDu endemic region in Sri Lanka were included in this study, 85 patients returned for follow-up. Serum Creatinine, CRP, Cystatin C and dipstick proteinuria were determined. Serum samples (n=32) were screened for antibodies against known human pathogenic viruses using the VirScanTM-Pipeline. Kidney biopsies (n=19) were investigated for the presence of viral pathogens using a PAN-Hanta-PCR and next-generation sequencing (NGS).ResultsThe prevalence of reduced eGFR at initial presentation was high, especially in men. After a median follow-up of 2.3 years, 16 patients had lost ≥4ml/min/1.73m2 eGFR per year and their eGFR was &lt;90ml/min/1.73m2 at last follow-up. Patients with loss of eGFR clustered geographically. Virome screening did not identify any antibody reactivity in the loss of eGFR group. NGS-evaluation and Hanta-PCR of 19 kidneys biopsies did not detect viral pathogens.ConclusionA significant proportion of patients in a CKDu endemic region presenting with a feverish syndrome developed a substantial loss of eGFR during the following years. No evidence of a viral etiology was found.
DOI: 10.6084/m9.figshare.28269434.v1
title: CKDu Sri Lanka Kidney non-human RNA

description: Methods Here, we performed a prospective observational cohort study of symptomatic patients presenting with a feverish syndrome at an outpatient clinic in a CKDu-endemic region of Sri Lanka. Between June 2018 and November 2021, a cohort of 151 patients presenting with a feverish syndrome to an outpatient clinic in a CKDu endemic region in Sri Lanka were included in this study, 85 patients returned for follow-up. Serum Creatinine, CRP, Cystatin C and dipstick proteinuria were determined. Serum samples (n=32) were screened for antibodies against known human pathogenic viruses using the VirScanTM-Pipeline. Kidney biopsies (n=19) were investigated for the presence of viral pathogens using a PAN-Hanta-PCR and next-generation sequencing (NGS).ResultsThe prevalence of reduced eGFR at initial presentation was high, especially in men. After a median follow-up of 2.3 years, 16 patients had lost ≥4ml/min/1.73m2 eGFR per year and their eGFR was &lt;90ml/min/1.73m2 at last follow-up. Patients with loss of eGFR clustered geographically. Virome screening did not identify any antibody reactivity in the loss of eGFR group. NGS-evaluation and Hanta-PCR of 19 kidneys biopsies did not detect viral pathogens.ConclusionA significant proportion of patients in a CKDu endemic region presenting with a feverish syndrome developed a substantial loss of eGFR during the following years. No evidence of a viral etiology was found.
DOI: 10.15468/dl.6wehhk
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Blicca bjoerkna",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1865",
 "Year is less than or equal to 1869"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008475-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4akpac
title: Occurrence Download

description: A dataset containing 468 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rupiphila tachiroei",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 468 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008477-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.db6mhp
title: Occurrence Download

description: A dataset containing 11654 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Specimen)",
 "Geometry POLYGON((-148.9 54.19,-124.21 54.19,-124.21 61.74,-148.9 61.74,-148.9 54.19))",
 "HasCoordinate is true",
 "License is one of (CC-BY-NC 4.0, CC-BY 4.0, CC0 1.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Ochrophyta"
 ]
}

 The dataset includes 11654 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008476-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17508733
title: RustXec: A Vulnerability Reproduction Dataset for Assessing Security Risks in Open-Source Rust Applications

description: This work presents RustXec, a comprehensive reproducible dataset for Rust vulnerabilities. RustXec includes 102 vulnerabilities from RustSec spanning 2021-2025, which covers eight vulnerability categories. For each vulnerability, we provide verified PoVs to demonstrate the vulnerability as described in the vulnerability report and provide a containerized execution environment, enabling developers to easily reproduce vulnerabilities without complex environment setup.
DOI: 10.5281/zenodo.17508732
title: RustXec: A Vulnerability Reproduction Dataset for Assessing Security Risks in Open-Source Rust Applications

description: This work presents RustXec, a comprehensive reproducible dataset for Rust vulnerabilities. RustXec includes 102 vulnerabilities from RustSec spanning 2021-2025, which covers eight vulnerability categories. For each vulnerability, we provide verified PoVs to demonstrate the vulnerability as described in the vulnerability report and provide a containerized execution environment, enabling developers to easily reproduce vulnerabilities without complex environment setup.
DOI: 10.15468/dl.zq2qsd
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chelonoidis gersoni"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008479-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ywqwtn
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Blicca bjoerkna",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1870",
 "Year is less than or equal to 1874"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008480-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fswcrm
title: Occurrence Download

description: A dataset containing 178 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sanicula epipactis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 178 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008482-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/5wmcq3
title: Molecular phylogeny and morphology reveal two new species, Ophiocordyceps ramosa sp. nov. (Ophiocordycipitaceae) and Leptobacillium hepiali sp. nov. (Cordycipitaceae), in Hypocreales from China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Shen, Juan, Gou, Wei, Tian, Hui-Ling, Fei, Gang-Xiang, Guan, Jing-Qiang, Long, Chun-Yan, Zou, Xiao (2026): Molecular phylogeny and morphology reveal two new species, Ophiocordyceps ramosa sp. nov. (Ophiocordycipitaceae) and Leptobacillium hepiali sp. nov. (Cordycipitaceae), in Hypocreales from China. MycoKeys 127: 191-216, DOI: 10.3897/mycokeys.127.173361AbstractOphiocordyceps holds significant value in controlling arthropod populations, maintaining ecosystem balance, and developing bioactive substances. During the natural infection of hosts, Ophiocordyceps fungi, along with other fungal species, form a micro-ecological complex, where these microorganisms also exhibit ecological functions and biological value. In this study, two new species were introduced, from Ophiocordyceps and Leptobacillium, based on morphological observation and multi-gene (ITS, nrSSU, nrLSU, tef- 1 α, rpb 1, and rpb 2) phylogenetic analysis. The phylogenetic analysis revealed that Ophiocordyceps ramosa sp. nov. is closely related to Hirsutella satumaensis and H. nodulosa, and Leptobacillium hepiali sp. nov. is closely related to L. latisporum. O. ramosa sp. nov. is characterised by multi-branched or partially forked, lignified and light brown stromata, phialides with a swollen base and tapering neck, and spherical or sub-spherical conidia, distinguishing it from closely related species. L. hepiali sp. nov. is characterized by solitary, unbranched phialides, clearly differentiating it from its relatives, which have 2–3 branched phialides. The distinctiveness of these two new species was strongly supported by both molecular phylogeny and morphology.
DOI: 10.15468/dl.qaccsh
title: Occurrence Download

description: A dataset containing 30856 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cannabis"
 ]
}

 The dataset includes 30856 records from 850 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008483-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mgenzs
title: Occurrence Download

description: A dataset containing 47714 records in GBIF matching the query:
SELECT
 '222' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 8.098015256935714
 AND decimalLatitude &lt;= 12.166598047573723
 AND decimalLongitude &gt;= 75.29747196830144
 AND decimalLongitude &lt;= 80.94934460961532
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 47714 records were derived from 257 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008470-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tkedu5
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Blicca bjoerkna",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1875",
 "Year is less than or equal to 1879"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008484-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qpfbjy
title: Occurrence Download

description: A dataset containing 636 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Saposhnikovia divaricata",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 636 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008486-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.