cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/8szb7-pyp85
title: Eco 041010 MP58

description: Escherichia coli, 10apr19a_042010_MP58_009, btub filaments,
description: <strong>Tilt Series Date:</strong> 2010-04-19</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> 19.1 Martin</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2010-04-19-18/rawdata/</p>10apr19a_042010_MP58_009.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2010-04-19-18/rawdata/10apr19a_042010_MP58_009.mrc"
        > <i class="download icon"></i> Download </a></p>

        10apr19a_042010_MP58_009_full.rec,  Reconstruction (Pixel Size 1.9 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2010-04-19-18/3dimage_14785/10apr19a_042010_MP58_009_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/j9zb5-0wc51
title: Delftia acidovorans in NB

description: Delftia acidovorans Cs1-4 grown in NB
description: <strong>Tilt Series Date:</strong> 2009-03-30</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Delftia acidovorans</p>
<strong>Strain:</strong> Cs1-4</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 0.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> grown by Bill Hickey at UW-Madison; data collected and processed by Elitza Tocheva</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown in NB.</p>
<strong>Sample Preparation:</strong> 20nm gold, 2s blot, -2 offset</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-03-30-30/rawdata/</p>09mar31a_v_005.mrc,  Tilt Series (Pixel Size 0.962 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-03-30-30/rawdata/09mar31a_v_005.mrc"
        > <i class="download icon"></i> Download </a></p>

        wt5_full.rec,  Reconstruction (Pixel Size 1.924 nm), 660.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-03-30-30/3dimage_94731/wt5_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/95d42-a7m87
title: Hyphomonas session7 41KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-02-05</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1.5°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-02-05-69/rawdata/</p>09feb05a_Hm7I_082.mrc,  Tilt Series (Pixel Size 0.512 nm), 704.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-02-05-69/rawdata/09feb05a_Hm7I_082.mrc"
        > <i class="download icon"></i> Download </a></p>

        09feb05a_Hm7I_082_1k.rec,  Reconstruction (Pixel Size 1.024 nm), 24.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-02-05-69/3dimage_7188/09feb05a_Hm7I_082_1k.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/jwaaw-xfd22
title: BsubtilisMJ007

description: Bsubtilis MJ007, skinny Bacillus
description: <strong>Tilt Series Date:</strong> 2009-09-26</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> MJ007, ponA null</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> strain from Kit Pogliano at UCSD</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulation media</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-09-26-24/3dimage_24640/</p>09sep26a_et-pos4_005_full.rec,  Reconstruction (Pixel Size 1.9 nm), 838.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        09sep26a_et-pos4_005.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-09-26-24/rawdata/09sep26a_et-pos4_005.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.nnq4xf
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polyplectron katsumatae",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 66 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047570-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/k3n7d-p3m31
title: Pdj 121509 MP34

description: Prosthecobacter dejongeii, 09dec18a_MP34_Pdj_045,
description: <strong>Tilt Series Date:</strong> 2009-12-18</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter dejongeii</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
  mpa2009-12-18-42_slicer4361.jpg: Unknown mpa2009-12-18-42_slicer4362.jpg: Extracellular vesicle mpa2009-12-18-42_slicer4363.jpg: Vesicle
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-12-18-42/rawdata/</p>09dec18a_MP34_Pdj_045.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-12-18-42/rawdata/09dec18a_MP34_Pdj_045.mrc"
        > <i class="download icon"></i> Download </a></p>

        09dec18a_MP34_Pdj_045_full.rec,  Reconstruction (Pixel Size 1.9 nm), 838.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-12-18-42/3dimage_14319/09dec18a_MP34_Pdj_045_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/dshms-gkk06
title: HIV gag session12 41KX

description: Opti-prep HIV gag shell
description: <strong>Tilt Series Date:</strong> 2009-04-13</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> HIV cores</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 2°, constant angular increment, dosage: 72.0 eV/Å²,  defocus: -7.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Cultured by Virgine; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Opti-prep</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-04-13-23/rawdata/</p>09apr13a_b19a_027.mrc,  Tilt Series (Pixel Size 0.512 nm), 570.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-04-13-23/rawdata/09apr13a_b19a_027.mrc"
        > <i class="download icon"></i> Download </a></p>

        09apr13a_b19a_027_full.rec,  Reconstruction (Pixel Size 1.024 nm), 293.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-04-13-23/3dimage_7495/09apr13a_b19a_027_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/0fmnx-2xe69
title: Pdj 030509 397

description: Prosthecobacter dejongeii, 09mar19a_Pdjgrid_030509_397_w4_040,
description: <strong>Tilt Series Date:</strong> 2009-03-19</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter dejongeii</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-03-19-34/rawdata/</p>09mar19a_Pdjgrid_030509_397_w4_040.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        09mar19a_Pdjgrid_030509_397_w4_040_full.rec,  Reconstruction (Pixel Size 1.9 nm), 838.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-03-19-34/3dimage_13748/09mar19a_Pdjgrid_030509_397_w4_040_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/tdzd1-7ft30
title: Pdj 030509 397

description: Prosthecobacter dejongeii, 09mar19a_Pdjgrid_030509_397_w4_023,
description: <strong>Tilt Series Date:</strong> 2009-03-19</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter dejongeii</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-03-19-18/rawdata/</p>09mar19a_Pdjgrid_030509_397_w4_023.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        09mar19a_Pdjgrid_030509_397_w4_023_full.rec,  Reconstruction (Pixel Size 1.9 nm), 838.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-03-19-18/3dimage_13716/09mar19a_Pdjgrid_030509_397_w4_023_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.9p3he7
title: Occurrence Download

description: A dataset containing 75224 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-75.63812 6.20237,-75.54125 6.20237,-75.54125 6.24110,-75.63812 6.24110,-75.63812 6.20237))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 75224 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047545-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.25wu8u
title: Occurrence Download

description: A dataset containing 589 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stipa comata",
 "HasCoordinate is true"
 ]
}

 The dataset includes 589 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044562-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fg4uyf
title: Occurrence Download

description: A dataset containing 11505 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phyllactinia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11505 records from 173 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044561-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xsr6cb
title: Occurrence Download

description: A dataset containing 773 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Artemisia frigida"
 ]
}

 The dataset includes 773 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044563-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3mh8v8
title: Occurrence Download

description: A dataset containing 412754 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Coragyps atratus",
 "Country is Colombia"
 ]
}

 The dataset includes 412754 records from 561 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044533-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.svkzjh
title: Occurrence Download

description: A dataset containing 165 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-112.0188 27.14913, -111.8688 27.14913, -111.8688 27.29913, -112.0188 27.29913, -112.0188 27.14913))"
 ]
}

 The dataset includes 165 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044565-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ud96yb
title: Occurrence Download

description: A dataset containing 34423 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Asia, Europe)",
 "MediaType is Image",
 "OccurrenceStatus is Present",
 "VerbatimScientificName is Passer domesticus",
 "Year 2025-2025"
 ]
}

 The dataset includes 34423 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044564-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21947/2375442
title: MVCO Site - Lidar / Processed Data

description: This dataset contains processed data from the UTD LIDAR Windcube 200S at the WFIP3 MVCO site.
DOI: 10.15468/dl.7suu65
title: Occurrence Download

description: A dataset containing 371 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stipa lemmonii",
 "HasCoordinate is true"
 ]
}

 The dataset includes 371 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044567-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q2rjwa
title: Occurrence Download

description: A dataset containing 111 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brasiliomyces",
 "HasCoordinate is true"
 ]
}

 The dataset includes 111 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044568-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17358240
title: Long-term ambient vibration data of a real cultural heritage building — Hospital Real of Granada (Spain)
title: Continuous AVD from 27th Jan 2025 to 2nd Feb 2025

description: 📊 Ambient Vibration Data — Hospital Real (Granada). Continuous data from 27th January 2025 to 2nd February 2025

     

🏛️ Overview

This dataset contains raw acceleration data recorded from the tower of the Hospital Real in Granada (Spain), collected between 27 January and 2 February 2025 as part of the BUILDCHAIN project (European Union’s Horizon Europe Programme, Grant Agreement No. 101092052).

The Hospital Real is a 16th-century historical building that currently serves as the Rectorate of the University of Granada.

🧠 Project Context: BUILDCHAIN

BUILDCHAIN (Building Information Modelling and Blockchain for Sustainable Construction Supply Chains) is a Horizon Europe innovation project developing a Decentralized Knowledge Graph (DKG) to enable trustworthy data exchange and AI-supported decision-making across the construction and maintenance life cycle.

 

The Hospital Real of Granada is the Pilot 1 site of this project. It demonstrates cognitive Structural Hhealth Monitoring in heritage buildings through the integration of real-time sensing, ontologies, Knowledge Graphs and AI-based reasoning.

🧩 Data Description

The data uploaded to this repository corresponds to raw accelerations measured by the permanent monitoring system installed in the dome of the building (see the "Description.pdf" attatched document). Each entry in the dataset represents one timestamped measurement cycle from the six accelerometers installed in the tower.  

The data structure is as follows:

 

{

  "_id": { "$oid": "679d6456a075357ae8453ff3" },

  "timestamp": 1738368000.0003407,

  "sensor_data": [

    { "sensor_id": "1", "acceleration": -9.245776504862387e-05 },

    { "sensor_id": "2", "acceleration": 0.000863497793712633 },

    { "sensor_id": "3", "acceleration": -0.0010263550777435335 },

    { "sensor_id": "4", "acceleration": 0.001409646938665653 },

    { "sensor_id": "5", "acceleration": -0.00060836440817912 },

    { "sensor_id": "6", "acceleration": 0.00017428727453226676 }

  ]

}

 

Where:



_id: unique identifier.

timestamp: UNIX time (seconds, float precision).  

sensor_data: Array of readings from each accelerometer.  

sensor_id: Identifier for each sensor (1–6).


⚙️ Acquisition System

The monitoring campaign uses a National Instruments DAQ system connected to six KB12VD seismic accelerometers (10 V/g), with the following characteristics:





Sampling rate: 200 Hz.

Unit: g.

Acquisition mode: Continuous real-time stream.

Database: MongoDB.

Format: JSON Lines (`.jsonl`) — one document per timestamp.



🛠️Usage



Download the data_20250127-20250202.zip file.

Uncompress the .zip file to get the data_20250127-20250202 folder.

Decompress all .gz files inside the data_20250127-20250202 folder: to assist in this task, python code in "unzip_acceleration_data.zip" folder can be used.  


📧 Contact

Juan Chiachío Ruano

Universidad de Granada

jchiachio@ugr.es

 

© 2025 BUILDCHAIN Consortium