cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.12341588
title: The natural variance of Arabidopsis secondary metabolism on extended darkness-1

description: In plants due to their sessile nature, secondary metabolites are important components against different abiotic and biotic stress, such as extended darkness. For this reason, the variation of secondary metabolite content of the Arabidopsis thaliana HapMap natural population following 0- and 6-d darkness treatment were detected and the raw data of different accessions at two timepoints were deposited in the MetaboLights database. Moreover, the annotated secondary metabolites of these samples are presented in this data descriptor, which we believe will be a usefully re-usable resource for future integrative analysis with dark-treated transcripts, proteins or other phenotypic data in order to comprehensively illustrate the multiomic landscape of Arabidopsis in response to the stresses exerted by extended darkness.
DOI: 10.5281/zenodo.4906962
title: Sei framework resources (hg19 and hg38 FASTA files)

description: This is the `resources` directory that should be downloaded in order to run the Sei framework code. It contains the hg19 and hg38 genome FASTA files downloaded from UCSC, as well as the index files generated by `pyfaidx` Python package for fast indexing and querying of genome coordinate sequences.
DOI: 10.6084/m9.figshare.3754038
title: AUTO GLASS START.txt

description: This is a text file associated with Ref. [7] from R. Siew, "Practical automated glass selection and the design of apochromats with large field of view," App. Opt. 55, pp. 9232 - 9236 (2016). It lists the lens prescription for the Zemax lens file of Ref. [6] in the above manuscript. The lens prescription and design form is based on the design by A. Yang, X. Gao, and M. Li, "Design of apochromatic lens with large field and high definition for machine vision," App. Opt. 55, 5977 - 5985 (2016).
DOI: 10.6084/m9.figshare.3754431
title: AUTO GLASS FINISHED.txt

description: This is a text file associated with Ref. [9] from R. Siew, "Practical automated glass selection and the design of apochromats with large field of view," App. Opt. 55, pp. 9232 - 9236 (2016). It lists the lens prescription for the Zemax lens file of Ref. [8] in the above manuscript. This lens represents the terminated state after performing an automated global search for alternative glasses, starting from the file "AUTO GLASS START.zmx". The design form is based on the design by A. Yang, X. Gao, and M. Li, "Design of apochromatic lens with large field and high definition for machine vision," App. Opt. 55, 5977 - 5985 (2016).
DOI: 10.6084/m9.figshare.3754701
title: AUTO GLASS FINISHED optimized.txt

description: This is a text file associated with Ref. [11] from R. Siew, "Practical automated glass selection and the design of apochromats with large field of view," App. Opt. 55, pp. 9232 - 9236 (2016). It lists the lens prescription for the Zemax lens file of Ref. [10] in the above manuscript. This lens represents a re-optimized state of the prior lens "AUTO GLASS FINISHED.zmx". The design form is based on the design by A. Yang, X. Gao, and M. Li, "Design of apochromatic lens with large field and high definition for machine vision," App. Opt. 55, 5977 - 5985 (2016).
DOI: 10.6084/m9.figshare.4928762
title: TubulinReconstructedMFSIMData.tif

description: Reconstructed MF-SIM data set of chromosomes
DOI: 10.7265/4b7s-rn93
title: U.S. National Ice Center Arctic and Antarctic Sea Ice Charts in SIGRID-3 Format
DOI: 10.17632/vfxf4trtcg.5
title: rust (Hemileia vastatrix) and leaf miner (Leucoptera coffeella) in coffee crop (Coffea arabica).

description: This dataset was used in a research paper called "Artificial intelligence for detection and quantification of rust and leaf miner in coffee crop", where we propose an algorithm and a mobile application to detect Rust and Leaf Miner in coffee leaves. We manually collected and labeled the images from a farm in Brazil, totalizing 285 images of the rust and 257 of the miner. The images are in the original captured resolution of 4000x2250 pixels. We used a simple smartphone camera to capture the images in RGB color system, and most parts of the photos were taken in a laboratory with a white background.
DOI: 10.18112/openneuro.ds004889.v1.1.2
title: Stroke Outcome Optimization Project (SOOP)
DOI: 10.21227/pjff-1a03
title: Cyber-security Modbus ICS dataset

description: This dataset was generated on a small-scale process automation scenario using MODBUS/TCP equipment, for research on the application of ML techniques to cybersecurity in Industrial Control Systems. The testbed emulates a CPS process controlled by a SCADA system using the MODBUS/TCP protocol. It consists of a liquid pump simulated by an electric motor controlled by a variable frequency drive (allowing for multiple rotor speeds), which in its turn controlled by a Programmable Logic Controller (PLC). The motor speed is determined by a set of predefined liquid temperature thresholds, whose measurement is provided by a MODBUS Remote Terminal Unit (RTU) device providing a temperature gauge, which is simulated by a potentiometer connected to an Arduino. The PLC communicates horizontally with the RTU, providing insightful knowledge of how this type of communications may have an effect on the overall system. The PLC also communicates with the Human-Machine Interface (HMI) controlling the system. The testbed is depicted in the image hereby included.The provided sample corresponds to roughly one third of the total available captured traces.The full network trace data sets are available at:https://github.com/tjcruz-dei/ICS_PCAPS/releases/tag/MODBUSTCP#1Citation RequestFrazão, I. and Pedro Henriques Abreu and Tiago Cruz and Araújo, H. and Simões, P. , "Denial of Service Attacks: Detecting the frailties of machine learning algorithms in the Classication Process", in 13th International Conference on Critical Information Infrastructures Security (CRITIS 2018), ed. Springer, Kaunas, Lithuania, September 24-26, 2018, Springer series on Security and Cryptology , 2018. DOI: 10.1007/978-3-030-05849-4_19
DOI: 10.25318/1310040301-eng
title:  Life expectancy, at birth and at age 65, by sex, five-year average, Canada and Inuit regions

description: Life expectancy, at birth and at age 65, by sex, five-year average, for Canada and Inuit regions.
DOI: 10.3886/e204121v1
title: Data and code for: Are Opportunity Zones an Effective Place-Based Policy?

description: We study Opportunity Zones, giving an overview of how the legislation was passed and the eligibility requirements. Using data from the 2013-17 American Community Survey, we show to what extent selected tracts were targeted towards the most disadvantaged (as measured by median income).
description: States within the United States.
DOI: 10.5281/zenodo.10123085
title: Dataset on the validation of individuals' intention to engagement in philanthropic activities measure
DOI: 10.5281/zenodo.10978564
title: MolClassifier Training and Validation Datasets

description: The dataset contains 18626 chemical images (15720 for training and 2906 for validation) with annotated classes: `Molecular Structure`, `Markush Structure` and `Background`. 



Selected chemical images are randomly selected from the outputs of a segmentation module applied to documents from the United States Patent and Trademark Office.

This dataset is part of PatCID: an open-access dataset of chemical structures in patent documents.
DOI: 10.5281/zenodo.11091
title: All Known Plant Rrna Sequences

description: Set of all large and small rRNA sequences retrieved from Silva DB, filtered for quality and with formatting tidied up to match strict FASTA specification.

 

To get sequences like this for yourself, you're best off getting the latest version from Silva DB: http://www.arb-silva.de/

If you use these sequences in a publication, please cite:

<strong>Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glöckner FO</strong> (2013) The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. <em>Nucl. Acids Res. 41 (D1): D590-D596.</em>
DOI: 10.6084/m9.figshare.1335990
title: Neural markers of performance states in an Olympic Athlete: An EEG case study in air-pistol shooting

description: The figures and movie contained in this dataset are associated to the paper published in Journal od Science and Medicine in Sport (issm.org): Neural markers of performance states in an Olympic Athlete: An EEG case study in air-pistol shooting
DOI: 10.6084/m9.figshare.26042506.v1
title: Supplement 2- Hypogonadism symptoms

description: Clinical Symptoms of Hypogonadism in Men with Cushing Syndrome
DOI: 10.6084/m9.figshare.4928717
title: TubulinRawMFSIMData.tif

description: Raw MF-SIM data set of tubulin
DOI: 10.15468/dl.mheu4f
title: Occurrence Download

description: A dataset containing 635 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Solanum pubigerum Dunal"
 ]
}

 The dataset includes 635 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0248710-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17909/t9bc75
title: K2 Extracted Lightcurves ("K2SFF")

description: The lightcurves from K2 contain larger systematics than the original Kepler mission, due to the reduction in pointing precision as a result of having to rely on only two reaction wheels. Vanderburg & Johnson have created a technique to correct for the pointing-dependent nature of the pixel-level fluxes. This correction improves the photometric precision by typical factors of 2-5, and results in median photometric performance of K2 targets to within a factor of two of the original, 4-wheeled mission.  The team have released their extracted lightcurves (using a variety of photometric apertures), as well as diagnostic plots, for each target.  The FITS lightcurves include all data points (with flags to indicate thruster firing), as well as multiple versions (each FITS extension is an extracted lightcurve for a different aperture). There are a total of twenty apertures provided: ten circular and ten based on the pixel response function. The final extension contains the summed image from all the postage stamp frames.
DOI: 10.5281/zenodo.10572870
title: PatCID: an open-access database of chemical structures in patent documents

description: PatCID is a chemical-structure database automatically created from images in patent documents. It contains 13M unique molecules, 80M molecule images, and 1.2M annotated documents from the United States (USPTO), Europe (EPO), Japan (JPO), Korea (KIPO), and China (CNIPA).

Leveraging state-of-the-art document understanding models, PatCID enables accurate document and molecule retrieval in patents.

Examples of how to use PatCID can be found on the PatCID GitHub repository
DOI: 10.5281/zenodo.10978812
title: Document to Chemical Structure Benchmarks (D2C-RND and D2C-UNI)

description: D2C-RND and D2C-UNI are benchmarks for simultaneously evaluating document segmentation, image classification, and molecule recognition.

Each of this dataset contains three subsets: a first set containing chemical images locations (segmentation), a second set with chemical images classes (classification), and a third set containing chemical-structures graphical descriptions (recognition). Molecules sampled from the recognition subset are taken from images in the classification dataset, which are taken from the pages in the segmentation dataset.

D2C-RND is sampled using a random distribution on chemical images and D2C-UNI covers a uniform distribution with respect to the year of publication and publishing office.

In total, these benchmarks contain 700 pages, 753 molecule images and 364 molecular-graphs.

These datasets are part of PatCID: an open-access dataset of chemical structures in patent documents.
DOI: 10.5525/gla.researchdata.619
title: High-speed extended-volume blood flow measurement using engineered point-spread function

description: The raw data for this work is too big to download and is available on request (approx. 6GB)
DOI: 10.57967/hf/2701
title: MolGrapher-Synthetic-300K
DOI: 10.25318/9810017101-eng
title: Mother tongue by knowledge of official languages, language spoken most often at home and other language(s) spoken regularly at home: Canada, provinces and territories, census metropolitan areas and census agglomerations with parts

description: Data on mother tongue, knowledge of official languages, language spoken most often at home and other language(s) spoken regularly at home, age and gender for the population excluding institutional residents.
DOI: 10.5258/soton/wp00687
title: Census-based gridded population estimates for Bukina Faso (2019), version 1.0

description: This repository includes census-disaggregated population gridded estimates for Burkina Faso, using a top-down approach based on Random Forest modelling. A breakdown by age and sex groups is joined to the gridded population count. A technical report explains the methodology, the validation procedures, the input data used and the limitations of the modelling. The data used for modelling are also attached.
DOI: 10.5281/zenodo.10515753
title: Deciphering the isotopic imprint of nitrate to reveal nitrogen source and transport mechanisms in a tile-drained agroecosystem

description: This dataset provides data used in the manuscript "Deciphering the isotopic imprint of nitrate to reveal nitrogen source and transport mechanisms in a tile-drained agroecosystem". These data include the tile drainage measurements and results from the soil incubation experiment.
DOI: 10.5286/isis.e.rb2000207
title: Local lattice distortions in a HfNbTaTiZr refractory high entropy alloys

description: Increasing the high temperature performance of materials is critical in order to achieve higher efficiencies in e.g. thermal energy processes. Refractory high entropy alloys (RHEAs), which consist of several refractory (high melting point) elements in roughly equal proportion, have shown potential to outperform traditional alloys in high temperature applications. A particular feature of these materials is the complexity on the atomic scale arising from the mixing of many different elements. As a result, local distortions of the atomic arrangement is believed to play a crucial role for both mechanical properties and thermal stability of the alloys. The proposed experiment is aimed at accurately measuring the local distortions in a candidate RHEA (HfNbTaTiZr), in order to understand the effects on the material properties.
DOI: 10.6073/pasta/6c758bc7e6e3ea95242d787ee49a263a
title: Small Mammal Exclosure Study (SMES) Vegetation Data from the Chihuahuan Desert Grassland and Shrubland at the Sevilleta National Wildlife Refuge, New Mexico (1995-2009)

description: This is data for vegetation canopy cover measured from each of the SMES study plots. Vegetation canopy cover was measured from each of the 36 one-meter2 quadrats twice each year. Animal consumers have important roles in ecosystems, determining plant species composition and structure, regulating rates of plant production and nutrient, and altering soil structure and chemistry. The purpose of this study is to determine whether or not the activities of small mammals regulate plant community structure, plant species diversity, and spatial vegetation patterns in Chihuahuan Desert shrublands and grasslands.
DOI: 10.6084/m9.figshare.26463268
title: Supplementary Material for: microRNA-216a-5p alleviates acute kidney injury of mice via suppressing FASL expression

description: Introduction: The aim of this present work was to investigate the mechanism of the microRNA (miR)-216a-5p/FASL axis in mice with acute kidney injury (AKI).
Methods: Mice kidney ischemia/reperfusion (I/R) injury was used as AKI models in this study. I/R mice were injected with miR-216a-5p- and FASL-related constructs to investigate potential mechanisms of kidney protection. kidney function, inflammation, oxidative stress, and kidney cell apoptosis were assessed after 24 h of reperfusion. In vitro, the hypoxia-reoxygenation (H/R) model was used with kidney tubular epithelial cells (TECs) to mimic kidney I/R injury. H/R-treated TECs were transfected with miR-216a-5p- and FASL-related constructs to detect cell viability, inflammation, and oxidative stress. miR-216a-5p and FASL expression levels in mouse kidney tissues and in H/R-treated TECs were detected.
Results: miR-216a-5p was downregulated and FASL was upregulated in kidney tissues of I/R mice and H/R-treated TECs. Upregulating miR-216a-5p attenuated kidney cell apoptosis and the damage of kidney function, and reduced inflammatory factor levels and oxidative stress response in kidney tissues of I/R mice. Upregulating miR-216a-5p advanced cell viability and reduced inflammatory factor levels and oxidative stress response in H/R-treated TECs. Downregulation of FASL effectively reversed the influences of downregulation of miR-216a-5p on kidney injury in mice and kidney TEC survival.
Conclusion: Our study reveals that miR-216a-5p reduces I/R-induced pathological kidney damage in AKI via suppressing FASL.
DOI: 10.14459/2024mp1733537
title: Data underlying the publication: Dynamic cost allocation allows network-forming forager to switch between search strategies

description: The dataset contains code and raw data used in the publication “Dynamic cost allocation allows network-forming forager to switch between search strategies”. The data provided includes the microscopy data and the provided code allows the reproduction of the basic analysis described in the publication.
DOI: 10.17183/lidar_nhdf_v20180501
title: Lidar Normandie Hauts-de-France 2016-2017 V.20180501

description: Les données acquises par lidars topographique, topo-bathymétrique et bathymétrique aéroportés dans le cadre de la phase 1 de la « stratégie de suivi homogène, récurrent et pérenne de la dynamique du littoral Manche Est – Mer du Nord » constituent un produit géographique appelé « partie maritime ». Cette opération a été pilotée par le Réseau d’Observation du Littoral Normand Picard (ROLNP) et le Shom. 
		Le produit partiel «partie maritime» lidar NHDF V.20180501 couvre la zone géographique s’étendant de Granville au Sud-Ouest à Port-en-Bessin en Normandie et une zone de Calais à la frontière belge.
DOI: 10.15468/dl.haeseh
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Coleophora gardesanella Toll, 1954",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 22 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083834-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q8g48y
title: Occurrence Download

description: A dataset containing 29824 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Leptinotarsa decemlineata (Say, 1824)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 29824 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083833-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2023-03.2774524/2328466
title: Data for EMSL Project 51287 from March 2023
DOI: 10.25582/data.2023-03.2774446/2328467
title: Data for EMSL Project 51287 from March 2023
DOI: 10.15468/dl.zu967f
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Limonium inexpectans L.Sáez & Rosselló"
 ]
}

 The dataset includes 27 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045978-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2023-03.2774574/2328468
title: Data for EMSL Project 51287 from March 2023
DOI: 10.15468/dl.vdhfve
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Koanophyllon grandiceps (Wright) R.M.King & H.Rob."
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045980-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qnb37c
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liparis brunnescens Schltr."
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045982-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2023-03.2774525/2328469
title: Data for EMSL Project 51287 from March 2023
DOI: 10.25582/data.2023-03.2774532/2328470
title: Data for EMSL Project 51287 from March 2023
DOI: 10.15468/dl.62ws48
title: Occurrence Download

description: A dataset containing 227 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Phoenicopterus roseus Pallas, 1811"
 ]
}

 The dataset includes 227 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045979-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2pjxjr
title: Occurrence Download

description: A dataset containing 248 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Lyginopteridaceae"
 ]
}

 The dataset includes 248 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045981-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2023-03.2774607/2328471
title: Data for EMSL Project 51287 from March 2023
DOI: 10.25582/data.2023-03.2774457/2328472
title: Data for EMSL Project 51287 from March 2023
DOI: 10.25582/data.2023-03.2774556/2328473
title: Data for EMSL Project 51287 from March 2023
DOI: 10.25582/data.2023-03.2774582/2328474
title: Data for EMSL Project 51287 from March 2023
DOI: 10.15468/dl.8ffxsd
title: Occurrence Download

description: A dataset containing 105982 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "InstitutionCode is inaturalist",
 "OccurrenceStatus is Present",
 "TaxonKey is Cathartes aura (Linnaeus, 1758)",
 "Year 1000-2024"
 ]
}

 The dataset includes 105982 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045960-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2023-03.2774699/2328475
title: Data for EMSL Project 51287 from March 2023
DOI: 10.25582/data.2023-03.2774568/2328476
title: Data for EMSL Project 51287 from March 2023