cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24316498
title: Supplementary Material for: A novel partial deletion of the TBL1XR1 gene detected using SNP array in a patient with motor delay, growth failure and Klinefelter syndrome

description: Introduction: Co-existence pathogenic copy number variation with aneuploidy is a rare phenomenon. Whole TBL1XR1 gene deletions are described and associated with autosomal dominant intellectual development disorder-41 (#616944). However, the phenotypical expression of the TBL1XR1 partial deletion is poorly described. Case presentation: We describe the case of a male, aged 18 months, who presented delayed motor development, gait disturbance, mild generalized hypotonia, minor dysmorphic features and growth failure, in addition to Klinefelter syndrome (KS). The single nucleotide polymorphism array revealed the de novo pathogenic interstitial deletion of chromosome 3q26.32 of 202 kb size that encompassed the first two exons of one relevant coding gene: TBL1XR1 (*608628). Conclusion: We report a male without clinical signs of KS and overlapped phenotypical features with another TBL1XR1 related disease: Pierpont syndrome (#602342). This patient extends the phenotypic spectrum of TBL1XR1 gene pathogenic variants.
DOI: 10.6084/m9.figshare.24316498.v1
title: Supplementary Material for: A novel partial deletion of the TBL1XR1 gene detected using SNP array in a patient with motor delay, growth failure and Klinefelter syndrome

description: Introduction: Co-existence pathogenic copy number variation with aneuploidy is a rare phenomenon. Whole TBL1XR1 gene deletions are described and associated with autosomal dominant intellectual development disorder-41 (#616944). However, the phenotypical expression of the TBL1XR1 partial deletion is poorly described. Case presentation: We describe the case of a male, aged 18 months, who presented delayed motor development, gait disturbance, mild generalized hypotonia, minor dysmorphic features and growth failure, in addition to Klinefelter syndrome (KS). The single nucleotide polymorphism array revealed the de novo pathogenic interstitial deletion of chromosome 3q26.32 of 202 kb size that encompassed the first two exons of one relevant coding gene: TBL1XR1 (*608628). Conclusion: We report a male without clinical signs of KS and overlapped phenotypical features with another TBL1XR1 related disease: Pierpont syndrome (#602342). This patient extends the phenotypic spectrum of TBL1XR1 gene pathogenic variants.
DOI: 10.5519/qd.1i9xz5b0
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (307 records)
DOI: 10.5281/zenodo.10083863
title: phronima_sedentaria_decontaminated_FSCR.fasta.gz

description: phronima_sedentaria_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.10083862
title: phronima_sedentaria_decontaminated_FSCR.fasta.gz

description: phronima_sedentaria_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.10083868
title: AutoDRIVE Nigel Dataset

description: Dynamics and perception dataset of AutoDRIVE Ecosystem's 1:14 scale "Nigel" vehicle. A lite version of this dataset along with related documentation and supplemental scripts for automated data collection, post-processing and visualization are available on GitHub.
DOI: 10.5281/zenodo.7964079
title: AutoDRIVE Nigel Dataset

description: Dynamics and perception dataset of AutoDRIVE Ecosystem's 1:14 scale "Nigel" vehicle. A lite version of this dataset along with related documentation and supplemental scripts for automated data collection, post-processing and visualization are available on GitHub.
DOI: 10.5281/zenodo.7964080
title: AutoDRIVE Nigel Dataset

description: Dynamics and perception dataset of AutoDRIVE Ecosystem's 1:14 scale "Nigel" vehicle. A lite version of this dataset along with related documentation and supplemental scripts for automated data collection, post-processing and visualization are available on GitHub.
DOI: 10.14278/rodare.2545
title: Data publication: Unraveling dispersion and buoyancy dynamics around radial A + B → C reaction fronts: microgravity experiments and numerical simulations.

description: This dataset includes the image data obtained from the Sounding Rocket experiment (TEXUS 57) and numerical simulation data.
DOI: 10.14278/rodare.2544
title: Data publication: Unraveling dispersion and buoyancy dynamics around radial A + B → C reaction fronts: microgravity experiments and numerical simulations.

description: This dataset includes the image data obtained from the Sounding Rocket experiment (TEXUS 57) and numerical simulation data.
DOI: 10.5281/zenodo.10073115
title: Sexual dimorphism and female advantage hypothesis in Dianthus plumarius (Caryophyllaceae)

description: I tested the sexual dimorphism trade-off hypothesis with the gynomonoecious-gynodioecious Dianthus plumarius (Caryophyllaceae). I measured in female and hermaphrodite plants: flower size, nectar volume and concentration, flower lifespan, ovule production, seed number, seed set, and seed weight. Additionally, bagging and pollen supplementation experiments were carried out to evaluate pollen limitation, probability of apomixis, if spontaneous autogamy is possible, and to examine the importance of pollen origin.
DOI: 10.5281/zenodo.10073116
title: Sexual dimorphism and female advantage hypothesis in Dianthus plumarius (Caryophyllaceae)

description: I tested the sexual dimorphism trade-off hypothesis with the gynomonoecious-gynodioecious Dianthus plumarius (Caryophyllaceae). I measured in female and hermaphrodite plants: flower size, nectar volume and concentration, flower lifespan, ovule production, seed number, seed set, and seed weight. Additionally, bagging and pollen supplementation experiments were carried out to evaluate pollen limitation, probability of apomixis, if spontaneous autogamy is possible, and to examine the importance of pollen origin.
DOI: 10.5517/ccdc.csd.cc274kdc
title: CCDC 2059962: Experimental Crystal Structure Determination

description: Related Article: Pongsakorn Chasing, Jakkapan Kumsampao, Pattarapapa Janthakit, Phattananawee Nalaoh, Thidarat Loythaworn, Wijitra Waengdongbung, Praweena Wongkaew, Taweesak Sudyoadsuk, Vinich Promarak|2023|J.Mater.Chem.C|11|14776|doi:10.1039/D3TC02638H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2flf1j
title: CCDC 2252027: Experimental Crystal Structure Determination

description: Related Article: Ashutosh Rawat, Dashrathbhai B. Kanzariya, Prem Lama, Tapan K. Pal|2023|Cryst.Growth Des.|23|7763|doi:10.1021/acs.cgd.3c00545
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fp7p2
title: CCDC 2254744: Experimental Crystal Structure Determination

description: Related Article: Anastasia Yu. Gitlina, Stanislav Petrovskii, Maksim Luginin, Alexey Melnikov, Elena Rychagova, Sergey Ketkov, Elena Grachova|2023|Dalton Trans.|52|16005|doi:10.1039/D3DT02970K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fp7q3
title: CCDC 2254745: Experimental Crystal Structure Determination

description: Related Article: Anastasia Yu. Gitlina, Stanislav Petrovskii, Maksim Luginin, Alexey Melnikov, Elena Rychagova, Sergey Ketkov, Elena Grachova|2023|Dalton Trans.|52|16005|doi:10.1039/D3DT02970K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fp7r4
title: CCDC 2254746: Experimental Crystal Structure Determination

description: Related Article: Anastasia Yu. Gitlina, Stanislav Petrovskii, Maksim Luginin, Alexey Melnikov, Elena Rychagova, Sergey Ketkov, Elena Grachova|2023|Dalton Trans.|52|16005|doi:10.1039/D3DT02970K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15151/esrf-es-1330738188
title: Multimodal imaging of the neuronal Robo1 cell receptor after stimulation with its canonical ligand Slit2

description: The goal of this proposal is to perform a multimodal imaging of the neuronal Robo1 cell receptor with Slit2. Slit proteins and their cognate binding partners, the cell surface Roundabout (Robo) receptors family, are one of four major neuronal developmental guidance cues pathways. The implication of Slit-Robo signalling in other fundamental biological processes also makes it an attractive therapeutic target. However, while Slit2 and Robo1 are well studied there are still open questions about how Slit binding triggers Robo signalling at the cell surface. More recently, we have recombinantly produced several Slit2 constructs, including an uncleavable version (Slit2-U), all incorporating a 6xHis tag. We propose to screen these to identify the minimal version of Slit2 necessary for Robo1 endocytosis, and the cellular effect of a Slit2-U. Next, we would like to determine if Slit2 is internalised with Robo1, and if so, its cellular location and correlate this with Robo1 light microscopy.
DOI: 10.15151/esrf-es-1372560706
title: XNH and XRF of various user experiments

description: XRF of chemically-fixed bacteria (see LS3269), XNH of human prostate samples (see MD3199, human sample authorization N° IE-2022-1971), XNH of human bone marrow samples (see MD1381, human sample authorization N° IE-2022-2486)
DOI: 10.25345/c5k931h5k
title: MassIVE MSV000093333 - Mycobacterium tuberculosis stress response - FBMN
title: Feature-based molecular networking of Mycobacterium tuberculosis exposed to several stresses.
DOI: 10.14278/rodare.2550
title: Data publication: Fermionic physics from ab initio path integral Monte Carlo simulations of fictitious identical particles

description: This repository contains the PIMC/CPIMC results shown in J. Chem. Phys. 159, 164113 (2023).
DOI: 10.14278/rodare.2551
title: Data publication: Fermionic physics from ab initio path integral Monte Carlo simulations of fictitious identical particles

description: This repository contains the PIMC/CPIMC results shown in J. Chem. Phys. 159, 164113 (2023).
DOI: 10.5281/zenodo.10066496
title: evolved_Ecoli_proteomicsdata
DOI: 10.15151/esrf-es-1393702691
title: Structural Biology at EMBL Grenoble, IBS-CIBB and IAB

description: This proposal clusters crystallography and bioSAXS projects at the EMBL Grenoble, IBS-CIBB and IAB. It combines groups working on different topics with a major focus on cell signaling proteins, drug discovery, long non-coding RNAs, nucleic acid-protein complexes, and host-pathogen interactions. The proposers have long-standing experience in the use, as well as the development of beam lines for macromolecular crystallography and biological small angle X-ray scattering and have participated in successive BAG applications over the years, mostly at the ESRF but also at other synchrotrons (i.e. Soleil, Petra III, and Diamond). As Stephen Cusack (former head of EMBL Grenoble) will be retiring at the end of 2023 we propose to change the BAG responsible to Andrew McCarthy for this application round.
DOI: 10.5281/zenodo.10066495
title: evolved_Ecoli_proteomicsdata
DOI: 10.5066/p99p09cv
title: Thalweg determination for three rivers in the Pacific Northwest, USA, 2023

description: In May 2023, the U.S. Geological Survey provided training for bathymetric data acquisition and processing for the Iraq Ministry of Water Resources. The training included multibeam sonar theory, survey planning, data collection and processing, and dissemination. This data release presents the raw survey data, a digital elevation model (DEM), and a thalweg shapefile for three survey areas in the Pacific Northwest, USA (Mores Creek, Idaho; Columbia River, OR; Willamette River, OR). Additionally, metadata describes the processing steps, quality assurance and control, and an overall summary of each dataset. The bathymetry point cloud data were collected at selected study sites in the Pacific Northwest, U.S.A, May 2023 to produce a digital elevation model that was used to delineate a thalweg for each of the selected study sites. The bathymetry digital elevation models (DEM) were derived from points cloud data which were then used to determine the location of the channel thalweg.
DOI: 10.6084/m9.figshare.15167022
title: Predictor retinopaty in T2DM patients

description: <b>Background and aims</b>: Diabetic retinopathy is a long-term complication of diabetes that is the most common complication of diabetes which is the leading cause of vision loss. The objective of this study is to discover retinopathy predictors, early detection of risk factors, and improved problem management in patients with type 2 diabetes in Medan.<strong>Method:</strong> <strong>This analytic cross-sectional study included 89 patients (60 non-retinopathy and 29 retinopathy patients). An indirect funduscopic revealed the presence of DR. Blood analysis was used to assess blood Glucose level, HbA1C, Alipoprotein-A1 (Apo-A1), Total Cholesterol (TC), HDL cholesterol (HDL-C), LDL cholesterol (LDL-C), triglyceride, and Vitamin D levels. Urine analysis was used to determine albuminuria using the albumin creatinine ratio (ACR). Each predictor's link with DR was determined using bivariate analysis, the Independent t-test, and the Mann–Whitney U test. The logistic regression test was used for multivariate analysis (p&lt;0.05).</strong><b></b><strong>Result:</strong> The retinopathy predictive model revealed that BGL, TC, and ACR were strong predictors, whereas hypertension, LDL-C, and Triglycerides were weak predictors.<strong>Conclusion</strong>: Increased BGL, total cholesterol, and ACR are solid markers for the occurrence of DR complications, in that type 2 DM patients should be aware of these predictors. Education efforts and increasing patient independence need to be carried out continuously to prevent other advanced chronic complications.<b> </b>
DOI: 10.6084/m9.figshare.15167022.v5
title: Predictor retinopaty in T2DM patients

description: <b>Background and aims</b>: Diabetic retinopathy is a long-term complication of diabetes that is the most common complication of diabetes which is the leading cause of vision loss. The objective of this study is to discover retinopathy predictors, early detection of risk factors, and improved problem management in patients with type 2 diabetes in Medan.<strong>Method:</strong> <strong>This analytic cross-sectional study included 89 patients (60 non-retinopathy and 29 retinopathy patients). An indirect funduscopic revealed the presence of DR. Blood analysis was used to assess blood Glucose level, HbA1C, Alipoprotein-A1 (Apo-A1), Total Cholesterol (TC), HDL cholesterol (HDL-C), LDL cholesterol (LDL-C), triglyceride, and Vitamin D levels. Urine analysis was used to determine albuminuria using the albumin creatinine ratio (ACR). Each predictor's link with DR was determined using bivariate analysis, the Independent t-test, and the Mann–Whitney U test. The logistic regression test was used for multivariate analysis (p&lt;0.05).</strong><b></b><strong>Result:</strong> The retinopathy predictive model revealed that BGL, TC, and ACR were strong predictors, whereas hypertension, LDL-C, and Triglycerides were weak predictors.<strong>Conclusion</strong>: Increased BGL, total cholesterol, and ACR are solid markers for the occurrence of DR complications, in that type 2 DM patients should be aware of these predictors. Education efforts and increasing patient independence need to be carried out continuously to prevent other advanced chronic complications.<b> </b>
DOI: 10.6084/m9.figshare.14915724.v2
title: F1000- Data_Submit_F1000 .xlsx

description: <b>Background:</b> Macro vascular complications occur very frequently in patients with type 2 diabetes mellitus (T2DM) with a high mortality rate, due to the development of cardiovascular disease (CVD), such as stroke, atherosclerosis acceleration, and atrial fibrillation. T2DM is a significant risk factor for CVD and has become the leading cause of death. The purpose of this study was to detect the early risk of macro vascular complications by using the ankle brachial index (ABI) as a marker.<b>Method:</b> This study was an analytic study with a cross-sectional approach. The study population was patients with T2DM from several primary health care centers in Medan. In total, 89 subjects who met the inclusion and exclusion criteria were recruited with consecutive sampling. ABI was determined as the ratio of systolic blood pressure in the brachial artery to the posterior tibial artery after the subjects had been relaxed and felt comfortable in a supine position. Examination of vitamin D and lipid profile was derived from examination of venous blood. Data were processed using SPSS and analyzed with one-way ANOVA.<b>Results:</b> The study found that there was a relationship between LDL-C, triglyceride, and vitamin D (25OH-D) based on the ABI (p &gt; 0.05).<b>Conclusions:</b> ABI can be used for an early detection of macro vascular complications. Apart from being easy to perform, ABI was non-invasive. Some other risk factors that can also be used to assess complications and have relationships with ABI were LDL-C, triglyceride, and vitamin D (25OH-D). Complications in T2DM patients can be prevented with reasonable blood sugar control and lifestyle changes. Education and motivation need to be given to patients so that they become more independent in controlling their disease and improving their quality of life.<br>
DOI: 10.6084/m9.figshare.14915724
title: F1000- Data_Submit_F1000 .xlsx

description: <b>Background:</b> Macro vascular complications occur very frequently in patients with type 2 diabetes mellitus (T2DM) with a high mortality rate, due to the development of cardiovascular disease (CVD), such as stroke, atherosclerosis acceleration, and atrial fibrillation. T2DM is a significant risk factor for CVD and has become the leading cause of death. The purpose of this study was to detect the early risk of macro vascular complications by using the ankle brachial index (ABI) as a marker.<b>Method:</b> This study was an analytic study with a cross-sectional approach. The study population was patients with T2DM from several primary health care centers in Medan. In total, 89 subjects who met the inclusion and exclusion criteria were recruited with consecutive sampling. ABI was determined as the ratio of systolic blood pressure in the brachial artery to the posterior tibial artery after the subjects had been relaxed and felt comfortable in a supine position. Examination of vitamin D and lipid profile was derived from examination of venous blood. Data were processed using SPSS and analyzed with one-way ANOVA.<b>Results:</b> The study found that there was a relationship between LDL-C, triglyceride, and vitamin D (25OH-D) based on the ABI (p &gt; 0.05).<b>Conclusions:</b> ABI can be used for an early detection of macro vascular complications. Apart from being easy to perform, ABI was non-invasive. Some other risk factors that can also be used to assess complications and have relationships with ABI were LDL-C, triglyceride, and vitamin D (25OH-D). Complications in T2DM patients can be prevented with reasonable blood sugar control and lifestyle changes. Education and motivation need to be given to patients so that they become more independent in controlling their disease and improving their quality of life.<br>
DOI: 10.5281/zenodo.10083876
title: Data and R scripts for: "Effect of introduction pathways on the invasion success of non-native plants along environmental gradients"

description: Data and scripts that replicate the results for the publication: Marc Riera, Joan Pino, Llorenç Sáez, Pere Aymerich, Yolanda Melero (under review) Effect of introduction pathways on the invasion success of non-native plants along environmental gradientsThe content of the files is described in a RedMe.txt file at the root directory, and in the main text of the manuscript.Code developed and provided by Marc Riera. Contact: m.riera@creaf.uab.cat
DOI: 10.5281/zenodo.7997200
title: Data and R scripts for: "Effect of introduction pathways on the invasion success of non-native plants along environmental gradients"

description: Data and scripts that replicate the results for the publication: Marc Riera, Joan Pino, Llorenç Sáez, Pere Aymerich, Yolanda Melero (under review) Effect of introduction pathways on the invasion success of non-native plants along environmental gradientsThe content of the files is described in a RedMe.txt file at the root directory, and in the main text of the manuscript.Code developed and provided by Marc Riera. Contact: m.riera@creaf.uab.cat
DOI: 10.5281/zenodo.7997201
title: Data and R scripts for: "Effect of introduction pathways on the invasion success of non-native plants along landscape gradients"

description: Data and scripts that replicate the results for the publication: Marc Riera, Joan Pino, Llorenç Sáez, Pere Aymerich, Yolanda Melero (in prep) Effect of introduction pathways on the invasion success of non-native plants along landscape gradients<br> The content of the files is described in a RedMe.txt file at the root directory, and in the main text of the manuscript.<br> Code developed and provided by Marc Riera. Contact: m.riera@creaf.uab.cat
DOI: 10.5281/zenodo.10083905
title: Dataset for "Context effects on the perception of saturation of fruit colors in still-life paintings" by Toscani, Wolf, Gegenfurtner & Braun. Journal of Vision, in press
DOI: 10.5281/zenodo.10083904
title: Dataset for "Context effects on the perception of saturation of fruit colors in still-life paintings" by Toscani, Wolf, Gegenfurtner & Braun. Journal of Vision, in press
DOI: 10.5281/zenodo.10079284
title: CT-LabSTAF continous data AMT29

description: Raw CT-LabSTAF datafiles collected duing the AMT29 transect in 2019. See readme.doc for more information.
DOI: 10.5281/zenodo.10079283
title: CT-LabSTAF continous data AMT29

description: Raw CT-LabSTAF datafiles collected duing the AMT29 transect in 2019. See readme.doc for more information.
DOI: 10.6084/m9.figshare.24154980
title: Source Data 2. The dataset derived from the UK Biobank for the cohort study.

description: This data is used to conduct cohort study to evaluate the association between smoking and the risk of inflammatory bowel disease.
DOI: 10.6084/m9.figshare.24154983
title: Source Data 5. The dataset derived from the UK Biobank for the G-E interaction analysis.

description: This data contains of the information on the mqtls of smoking-related methylation and is used to perform the G-E interaction analysis (for CD).
DOI: 10.6084/m9.figshare.24523528
title: Source Data 1. Cis methylation quantitative trait loci (mQTL) of smoking related CpG sites (GoDMC)

description: This dataset provides the cis-mQTLs for smoking-related CpG sites. It is one of the source data to perform the epigenetic mendelian randomization and colocalization analysis in this project.