cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.12636772
title: IC data from Drakopoulos et al., 2024

description: This dataset contains the inferior colliculus (IC) recordings that were used to evaluate the ICNet model in Drakopoulos et al., 2024. The code of the ICNet model is available via https://doi.org/10.5281/zenodo.11943090 or https://github.com/fotisdr/ICNet. A Jupyter notebook is included with a simple usage example for ICNet. 



Drakopoulos, F., Sabesan, S., Xia, Y., Fragner, A. & Lesica, N. A. (2024). Modeling neural coding in the auditory brain with high resolution and accuracy. bioRxiv 2024.06.17.599294; doi: 10.1101/2024.06.17.599294


Sound

The sound_data matfile can be accessed on MATLAB or Python and contains a structure with the 4 sounds that were used in model evaluation and elicited the responses in IC_data. Each sound segment is 30 s in duration and is calibrated with a 2e-5 Pa reference:



speech_in_quiet: A speech segment from the UCL SCRIBE dataset consisting of sentences spoken by a male talker and presented at 60 dB SPL.

speech_in_noise: A speech segment from the UCL SCRIBE dataset consisting of sentences spoken by a female talker and presented at 85 dB SPL. The speech segment was mixed in hallway noise from the Microsoft Scalable Noisy Speech dataset at 0 dB SNR.

moving_ripples: Dynamic moving ripples with frequency sinusoids between 4.7 kHz and 10.8 kHz presented at 85 dB SPL.

music: Three seconds from each of 10 mixed pop songs from the musdb18 dataset presented at 75 dB SPL.

fs: The sampling rate of the sounds (24414.0625 Hz).


IC recordings

The IC_data_trial1 and IC_data_trial2 matfiles contain the IC activity elicited by each of the 4 sounds on two successive trials. Each matfile contains a structure with 7 fields:



speech_in_quiet, speech_in_noise, moving_ripples and music: Recorded neural activity for 7 animals in response to each of the 4 sounds. Each field corresponds to a matrix of size [animals x time bins x channels] that contains multi-unit spikes across time bins and channels for each of the 7 animals. Each time element of the matrix indicates the spike count in one 1.3 ms bin (exactly 32 samples of the corresponding audio). 

animals: The experimental identifier of each animal as used in the ICNet model (numbers of [3,...,9]).

channel_CFs: An [animals x channels] matrix that contains the characteristic frequencies (in Hz) of each recorded unit for each of the 7 animals.

measurement_times: An [animals x sounds] matrix that contains the relative times (in s) at which each sound was recorded during each individual IC experiment. The experimental times were used as the time inputs in each corresponding decoder branch of ICNet.

fs: The sampling rate of the recorded multi-unit activity (24414.0625 / 32 = 762.9395 Hz). 


 

For questions, please reach out to one of the corresponding authors:



Fotios Drakopoulos: f.drakopoulos@ucl.ac.uk

Nicholas A Lesica: n.lesica@ucl.ac.uk




This work was supported by EPSRC EP/W004275/1 and MRC MR/W019787/1.
DOI: 10.5281/zenodo.12636809
title: EXPLORING EXTRALINGUISTIC TOOLS IN TRANSLATING HEROIC CHARACTERS: A COMPARATIVE STUDY
DOI: 10.5281/zenodo.12636810
title: EXPLORING EXTRALINGUISTIC TOOLS IN TRANSLATING HEROIC CHARACTERS: A COMPARATIVE STUDY
DOI: 10.26030/aqem-m481
title: Ten-day human unilateral lower limb suspension and active recovery in young healthy men

description: Electrophysiological alterations of the neuromuscular junction (NMJ) and motor unit potential (MUP) with unloading are poorly studied. We aimed to investigate these aspects and the underlying molecular mechanisms with short-term unloading and active recovery (AR). Eleven healthy males underwent a 10-day unilateral lower limb suspension (ULLS) period, followed by 21-day AR based on resistance exercise. Quadriceps femoris (QF) cross-sectional area (CSA) and isometric maximum voluntary contraction (MVC) were evaluated. Intramuscular electromyographic recordings were obtained during 10% and 25% MVC isometric contractions from the vastus lateralis (VL). Biomarkers of NMJ molecular instability (serum c-terminal agrin fragment, CAF), axonal damage (neurofilament light chain) and denervation status were assessed from blood samples and VL biopsies. NMJ and ion channel transcriptomic profiles were investigated by RNA-sequencing. QF CSA and MVC decreased with ULLS. Increased CAF and altered NMJ transcriptome with unloading suggested the emergence of NMJ molecular instability, which was not associated with impaired NMJ transmission stability. Instead, increased MUP complexity and decreased motor unit firing rates were found after ULLS. Downregulation of ion channel gene expression was found together with increased neurofilament light chain concentration and partial denervation. The AR period restored most of these neuromuscular alterations. In conclusion, the human NMJ is destabilized at the molecular level but shows functional resilience to a 10-day unloading period at least at relatively low contraction intensities. However, MUP properties are altered by ULLS, possibly due to alterations in ion channel dynamics and initial axonal damage and denervation. These changes are fully reversed by 21 days of AR. KEY POINTS: We used integrative electrophysiological and molecular approaches to comprehensively investigate changes in neuromuscular integrity and function after a 10-day unilateral lower limb suspension (ULLS), followed by 21 days of active recovery in young healthy men, with a particular focus on neuromuscular junction (NMJ) and motor unit potential (MUP) properties alterations. After 10-day ULLS, we found significant NMJ molecular alterations in the absence of NMJ transmission stability impairment. These findings suggest that the human NMJ is functionally resilient against insults and stresses induced by short-term disuse at least at relatively low contraction intensities, at which low-threshold, slow-type motor units are recruited. Intramuscular electromyography analysis revealed that unloading caused increased MUP complexity and decreased motor unit firing rates, and these alterations could be related to the observed changes in skeletal muscle ion channel pool and initial and partial signs of fibre denervation and axonal damage. The active recovery period restored these neuromuscular changes.
DOI: 10.25345/c5b27q32z
title: MassIVE MSV000095239 - GNPS_CG_plantas_native_brazil_metabolomics
title: Extraction protocols were adopted as described by Gachet et al. (2017), with specific modifications. The solvent dichloromethane (DCM) was replaced by ethanol (EtOH) for samples intended for analysis by low and high resolution Liquid Chromatography coupled to Mass Spectrometry (LC-MS). For samples obtained in the form of sachets for tea preparation, the procedure began with grinding the substrates, using a basic analytical grinder A 11 (IKA Moinhos). For materials obtained in natura, the procedure began with drying using liquid hydrogen and subsequent grinding of the substrates with the analytical grinder. The sample/solvent ratio adopted was 1 g of sample for 10 ml of solvent in both types of materials. Then, ultrasound extraction was carried out with EtOH.
DOI: 10.17632/v4dbzs6d9b.1
title: Geochemical data on Cr-spinel in micrometeorites from modern Antarctic sedimentary deposits

description: This data repository contains back-scattered electron images for all 27 micrometeorites containing Cr-spinel studied in Van Maldeghem et al., 2024 (EPSL). The study analyzed Cr-spinel grains in a selection of micrometeorites from the Sør Rondane and Transantarctic Mountains (Antarctica) in order to determine their composition, formation and potential terrestrial alteration. We supply two geochemical datasets, both as excel spreadsheets. The first dataset (EMPA data) contains the electron microprobe data obtained using a JEOL JXA-8200 electron micro probe analyzer at the National institute of Polar Research (Tokyo, Japan). The second dataset contains the triple oxygen isotope ratios measured at the Centre de Recherches Pétrographiques et Géochimiques (Nancy, France).
DOI: 10.5281/zenodo.8327400
title: MESA model files and data for: 'Stellar Neutrino Emission Across The Mass-Metallicity Plane'

description: Example MESA model files and stellar evolution tracks for download from "Stellar Neutrino Emission Across The Mass-Metallicity Plane".
DOI: 10.15468/dl.2whpft
title: Occurrence Download

description: A dataset containing 114 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amaranthus kloosianus Hunz."
 ]
}

 The dataset includes 114 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010663-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8327401
title: MESA model files and data for: 'Stellar Neutrino Emission Across The Mass-Metallicity Plane'

description: Example MESA model files and stellar evolution tracks for download from "Stellar Neutrino Emission Across The Mass-Metallicity Plane".
DOI: 10.15468/dl.aarams
title: Occurrence Download

description: A dataset containing 628 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amaranthus interruptus R.Br."
 ]
}

 The dataset includes 628 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010662-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q6hp5z
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amaranthus lepturus S.F.Blake"
 ]
}

 The dataset includes 103 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010664-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5bkygw
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amaranthus lombardoi Hunz."
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010665-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12636825
title: Attention Cueing in Rivalry: Insights from Pupillometry

description: The dataset holds a Matlab structure m, described as follows, with all the data published in Acquafredda et al., eNeuro 2022.

m = structure containing average data for generating the analyses and figures reported in the manuscript. It contains separate fields for the different conditions where the variables below were measured: main and control experiments; three stimulus types simulation, binocular rivalry (BINriv) and interocular grouping rivalry (IOGriv) and three cueing conditions no cue, att2dark (dark stimulus was cued) and att2bright (bright stimulus was cued). For the control experiments values are reported for four contrast conditions (instead of cueing conditions): brigthcont0 brigthcont25 brigthcont50 brigthcont100 and brigthcont150 plus one cueing condition (att2brigth).

Each of these fields has subfields containing the information detailed below, coded with the format (N x M) with N = number of participants and M = 1 for most variables, or M = 801 corresponding to the timepoints where the pupil timecourse was measured. 

Variables reported in the structure:

time: [1x801 double] % time from -4 sec to +4 secs from a perceptual switch

pupil: [10x801 double] % timecourse of baseline-corrected pupil size 

pupilbin: [10x1 double] % average baseline-corrected pupil size in the [-0.5 1] s interval around the perceptual switch 

pupil_nobslcorr: [10x1 double] % average NON baseline-corrected pupil size in the [-0.5 1] s interval around the perceptual switch 

prop: [10x1 double] % proportion of time spent reporting one of the three possibile percepts (white, black, mixed).
DOI: 10.5281/zenodo.12636826
title: Attention Cueing in Rivalry: Insights from Pupillometry

description: The dataset holds a Matlab structure m, described as follows, with all the data published in Acquafredda et al., eNeuro 2022.

m = structure containing average data for generating the analyses and figures reported in the manuscript. It contains separate fields for the different conditions where the variables below were measured: main and control experiments; three stimulus types simulation, binocular rivalry (BINriv) and interocular grouping rivalry (IOGriv) and three cueing conditions no cue, att2dark (dark stimulus was cued) and att2bright (bright stimulus was cued). For the control experiments values are reported for four contrast conditions (instead of cueing conditions): brigthcont0 brigthcont25 brigthcont50 brigthcont100 and brigthcont150 plus one cueing condition (att2brigth).

Each of these fields has subfields containing the information detailed below, coded with the format (N x M) with N = number of participants and M = 1 for most variables, or M = 801 corresponding to the timepoints where the pupil timecourse was measured. 

Variables reported in the structure:

time: [1x801 double] % time from -4 sec to +4 secs from a perceptual switch

pupil: [10x801 double] % timecourse of baseline-corrected pupil size 

pupilbin: [10x1 double] % average baseline-corrected pupil size in the [-0.5 1] s interval around the perceptual switch 

pupil_nobslcorr: [10x1 double] % average NON baseline-corrected pupil size in the [-0.5 1] s interval around the perceptual switch 

prop: [10x1 double] % proportion of time spent reporting one of the three possibile percepts (white, black, mixed).
DOI: 10.4225/08/579e72ea873ca
title: Physiographic Regions of Australia

description: The Physiographic Regions of Australia (Pain, Gregory, Wilson and McKenzie 2011) are a modification of those compiled by Jennings and Mabbutt (1977), and are based on a visual interpretation of landforms as expressed on the Shuttle Radar Terrain Mission (SRTM) digital elevation model (DEM). Apart from its descriptive role, a map of physiographic regions provides a regional system of reference for geomorphological and related physical geographical accounts. Through the groupings of physiographic regional characteristics at different levels, the action of underlying controls, for instance geologic or climatic, may be made apparent. Further, the map can provide a regional basis for an understanding of land characteristics that are dependent upon landforms, for example the distribution of soils or natural vegetation. Jennings J.N. and Mabbutt J.A. (1977) Physiographic outlines and regions. In 'Australia, a geography. Volume 1. The natural environment.' (Ed. DN Jeans) (Sydney University Press: Sydney).
DOI: 10.15468/dl.5c62qb
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.19_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Peganum multisectum (Maxim.) Bobrov"
 ]
}

 The dataset includes 102 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010669-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u38j88
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amaranthus looseri Suess."
 ]
}

 The dataset includes 11 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010667-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mtzhhd
title: Occurrence Download

description: A dataset containing 724 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amaranthus macrocarpus Benth."
 ]
}

 The dataset includes 724 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010668-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3uafnd
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amaranthus minimus Standl."
 ]
}

 The dataset includes 17 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010670-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z2r62k
title: Occurrence Download

description: A dataset containing 462 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is one of (Argentina, Peru, Ecuador, Chile, Bolivia (Plurinational State of))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is Coordinate rounded",
 "OccurrenceStatus is Present",
 "TaxonKey is Agriornis albicauda (Philippi & Landbeck, 1863)"
 ]
}

 The dataset includes 462 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010673-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5kkzzn
title: Occurrence Download

description: A dataset containing 3629 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "GadmGid is CAN.9_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Asclepias syriaca L.",
 "Year 2023-2024"
 ]
}

 The dataset includes 3629 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010674-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sj445w
title: Occurrence Download

description: A dataset containing 83710 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plantae)",
 "Country is New Zealand",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2024"
 ]
}

 The dataset includes 83710 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010672-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.stwuuy
title: Occurrence Download

description: A dataset containing 5195 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Thunnus thynnus (Linnaeus, 1758), Thunnus albacares (Bonnaterre, 1788), Thunnus obesus (Lowe, 1839), Thunnus atlanticus (Lesson, 1831))"
 ]
}

 The dataset includes 5195 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010675-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tzat63
title: Occurrence Download

description: A dataset containing 6903 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Gazania rigens (L.) Gaertn., Gazania linearis (Thunb.) Druce)"
 ]
}

 The dataset includes 6903 records from 268 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010677-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12636842
title: EXPLORING TRANSLATION TECHNIQUES FOR HEROIC CHARACTERS IN LITERATURE
DOI: 10.5281/zenodo.12636843
title: EXPLORING TRANSLATION TECHNIQUES FOR HEROIC CHARACTERS IN LITERATURE
DOI: 10.15468/dl.a5vvru
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.19_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Crepis tectorum L."
 ]
}

 The dataset includes 14 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010678-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xghsc5
title: Occurrence Download

description: A dataset containing 39655294 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Asteraceae)"
 ]
}

 The dataset includes 39655294 records from 8425 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010666-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d5kn8s
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-0.34584 39.31023,-0.29085 39.31023,-0.29085 39.37587,-0.34584 39.37587,-0.34584 39.31023))",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus terrestris (Linnaeus, 1758)"
 ]
}

 The dataset includes 27 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025325-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w6wpq6
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Costa Rica",
 "TaxonKey is Centrosema macrocarpum Benth."
 ]
}

 The dataset includes 77 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025324-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yd9r39
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Labeobarbus marequensis (Smith, 1841)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((30.0251 -31.3959,30.5701 -30.7329,30.5701 -28.5786,25.5395 -28.5786,25.5395 -32.9007,28.2048 -32.9007,28.5753 -32.6569,29.4902 -31.7517,30.0251 -31.3959))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025326-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.