cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12501128.v1
title: Actionable mutational profiles of Vietnamese patients with NSCLC

description: Population-specific profiling of mutations in cancer genes is of critical importance for the understanding of cancer biology in general as well as the establishment of optimal diagnostics and treatment guidelines for that particular population. Although genetic analysis of tumor tissue is often used to detect mutations in cancer genes, the invasiveness and limited accessibility hinders its application in large-scale population studies. In this study, we used ultra-deep massive parallel sequencing of plasma cell free DNA (cfDNA) to compare actionable mutation profiles of two different cohorts of Vietnamese patients with non-small cell lung cancer (NSCLC). The first cohort, called cfDNA (cell free DNA) cohort, included plasma samples collected from a total of 265 treatment naive Vietnamese patients with advanced stage NSCLC (stage III-IV). The second cohort, called ttDNA (tumour tissue DNA) cohort, comprised of tissue samples from 285 Vietnamese NSCLC patients with matched tumour stages and treatment status of the cfDNA cohort. We found that ultra-deep sequencing of plasma cfDNA represents an alternative approach for population-wide genetic profiling of cancer genes where recruitment of patients is limited to the accessibility of tumor tissue site.
DOI: 10.6084/m9.figshare.21909810.v11
title: omicverse_datasets

description: The datasets of omicverse
DOI: 10.6084/m9.figshare.27108928.v1
title: Supplementary Dataset for Experiments

description: Supplementary Dataset for Experiments of ICLR2025 Submission 5460
DOI: 10.17632/36vkgvh9tb
title: Base de datos de alfabetización en salud y conocimientos sobre VIH e infecciones sexualmente transmisibles en adolescentes

description: El conjunto de datos se creó a partir de encuestas a adolescentes de 15 a 17 años de edad de instituciones educativas de Lima, Perú.
DOI: 10.6084/m9.figshare.24645447.v1
title: Mimas Regional Crater Excel Sheets

description: These are the accompanying excel sheets for each mapped region in the Ferguson et al., paper in Earth and Planetary Science Letters. The mapped areas used are also included in this collection and are needed when constructing crater size-frequency diagrams. All three areas (BEP, HrInt, HrE) in and around the Herschel impact basin are located in one file.
DOI: 10.6084/m9.figshare.3807885.v1
title: Leuven Embedded Figures Test Target Shapes

description: This set of images contains the 16 unique target shapes that were presented to observers in the context of the Leuven Embedded Figures Test. <br><br>For each of these 16 unique target shapes there are 4 repetitions, with a unique file name to make target and context shape presentation easier to organize.<br>
DOI: 10.6084/m9.figshare.5426470.v1
title: Genome - Corallochytrium limacisporum

description: Genome assembly and annotation of Corallochytrium limacisporum<i> </i><br>- XXXX_gDNA.fasta: "Genome assembly (fasta format)"<br>- XXXX_long.annot.gff: "Gene annotation (GFF)"<br>- XXXX_long.cds.fasta: "Predicted transcripts (CDS only, fasta format)"<br>- XXXX_long.pep.fasta: "Predicted peptides (fasta format)"<br>If you use this data, please cite: Dynamics of genomic innovation in the unicellular ancestry of animals, Grau-Bové <i>et al., </i>eLife 2017<br>www.multicellgenome.com
DOI: 10.17632/58pjghv2mp
title: Data for: Impedance study of spark plasma sintered lutetium titanate ceramics: Effect of post-annealing

description: data in the manuscript
DOI: 10.6084/m9.figshare.16458717.v1
title: Karori Reservoir (2008).

description: Karori Reservoir electro-fishing survey (2008).<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Area Fished; Black Disc; Distance fished; EF % range; EF Range; EF current; EF pulse rate; Fish Species Counts; Specific Conductance; Time fished; Water Temperature<br><br><b>Start date:</b> 2008-01-18<br><br><b>End date:</b> 2008-11-06<br><br><b>Lake:</b> Karori Reservoir<br><br><b>Region:</b> Wellington<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.6084/m9.figshare.22179500.v4
title: Broodstock development, induced spawning and larva rearing of the bilih, Mystacoleucus padangensis (Bleeker, 1852), a vulnerable species, and its domestication potential for new candidate aquaculture.

description: <em>Mystacoleucus padangensis</em> living in Lake Singkarak, Indonesia, has high potential market demand but is threatened by overfishing and has not been successfully cultured. This study describes the first broodstock development, induced breeding, and larval rearing of <em>M. padangensis</em>.
DOI: 10.6084/m9.figshare.28062659.v1
title: Supplemental File 1

description: Serum is commonly added to culture medium to improve production of bovine embryos in vitro. Main goals were to verify actions of serum to increase blastocyst yield and test the hypothesis that fetal bovine serum alters blastocyst gene expression in a manner that could affect competence to establish pregnancy and dysregulate fetal development. Media used were synthetic oviduct fluid medium bovine embryo 2 (SOF-BE2) and a commercial medium termed here as IVFB. Three experiments were conducted in which either adult or fetal bovine serum (10%, v/v) was added at day 1 or 5 of development. Overall, serum increased blastocyst production. Gene expression in blastocysts was measured in the experiment in which fetal bovine serum was added at day 5. Serum resulted in 215 differentially-expressed genes for embryos cultured in SOF-BE2 and 194 genes for embryos cultured in IVFB (adjusted p-value of &lt; 0.05 and a |log2| fold change &gt; 1). Only 24 genes were regulated by serum similarly for both media including several transcription factors, imprinted genes, PSAT1 implicated in fetal growth in mice, and genes dysregulated in cloned embryos. Serum largely eliminated differences in gene expression between media. Expression data on eight biomarker genes were also used to calculate an embryo competence index previously related to embryo survival. Serum lowered the embryo competence index for both media. In conclusion, actions of fetal bovine serum on the preimplantation embryo include changes in gene expression indicative of reduced embryo competence and possible alterations in fetal development.
DOI: 10.6084/m9.figshare.29135384.v2
title: Water cycle corpus data

description: this dataset includes the 'water cycle' related sentences derived from high-quality peer-reviewed articles during 2000 to 2024.
DOI: 10.6084/m9.figshare.6911924.v4
title: Reaction times and other skewed distributions: problems with the mean and the median

description: Reproducibility package for the article:<br><b>Reaction times and other skewed distributions: problems with the mean and the median</b>Guillaume A. Rousselet & Rand R. Wilcox<br>preprint: https://psyarxiv.com/3y54r<i>doi: </i>10.31234/osf.io/3y54r<i><br></i>This package contains all the code and data to reproduce the figures and analyses in the article.<i><br></i>
DOI: 10.17632/rm7vm2kf4s
title: CanSeer: A Translational Methodology for Developing Personalized Cancer Models and Therapeutics

description: LUSC (lung squamous cell carcinoma) Dataset used for demonstrating CanSeer is available as "Supplementary Dataset", and all the input files, output files, analyses, parameters, code and other findings are given in "Supplementary Data"
DOI: 10.6084/m9.figshare.1494640.v1
title: Random Forest Population Mapping Supplementary Metadata and KML Visualizations

description: These files are supplementary information to illustrate the metadata reports and default visualizations provided as end-user products for WorldPop Random Forest-based population mapping. This collection contains those reports outlining all ancillary covariates and model fitting, as well as KML for each case-stady country outlined in Stevens, et al. (2015) which describes the methods to produce these data in detail. Stevens FR, Gaughan AE, Linard C, Tatem AJ (2015) Disaggregating Census Data for Population Mapping Using Random Forests with Remotely-Sensed and Ancillary Data. PLoS ONE 10(2): e0107042. doi:10.1371/journal.pone.0107042
DOI: 10.6084/m9.figshare.19497656.v1
title: processed_snATACseq.zip

description: Processed islet snATAC-seq data
DOI: 10.6084/m9.figshare.21155506.v2
title: MOFTransformer

description: - the pretrained model with 1M hMOFs (best_mtp_moc_vfp.ckpt) <br> - dataset for public database (qmof_v13_realse.tar.gz, coremof_release.tar.gz) <br> - downstream dataset for finetuning (downstream_dataset.tar.gz) <br> === Feature importance tutorial === - the finetuned model with PBE bandgap in QMOF database (with 20,135 structures) (finetuned_bandgap.ckpt) <br> - the finetuned model with H2 uptake (with 20,000 structures) (finetuned_h2_uptake.ckpt)
DOI: 10.6084/m9.figshare.25414765.v2
title: <sup>A deep profile of gene expression across 18 human cancers </sup>

description: Data for "A deep profile of gene expression across 18 human cancers"
DOI: 10.6084/m9.figshare.5220001.v5
title: DelSontro, Beaulieu & Downing- files for SI- Greenhouse gas emissions from lakes and impoundments: upscaling in the face of global change. Limnology and Oceanography Letters doi: 10.1002/lol2.10073

description: Lakes and impoundments are important sources of greenhouse gases (GHG: i.e., CO<sub>2</sub>, CH<sub>4</sub>, N<sub>2</sub>O), yet global emission estimates are based on regionally-biased averages and elementary upscaling.<i> </i>We assembled the largest global dataset to date on emission rates of all three GHGs and found they covary with lake size and trophic state. Fitted models were upscaled to estimate global emission using global lake size inventories and a remotely-sensed global lake productivity distribution. Published traditional upscaling approaches overestimated CO<sub>2</sub> and N<sub>2</sub>O emission but underestimated CH<sub>4</sub> by half. Our upscaled size-productivity weighted estimates (1.25-2.3 Pg of CO<sub>2</sub>-equivalents annually) are nearly 30% of global CO<sub>2</sub> fossil fuel emission with 75% of the climate impact due to CH<sub>4</sub>. Moderate global increases in eutrophication could translate to 5-40% increases in the GHG effects in the atmosphere, adding the equivalent effect of another 13% of fossil fuel combustion or an effect equal to current land use change.<br>
DOI: 10.17632/cnbrvj68xt
title: Effects of strategic orientation open innovation through dynamic capabilities

description: The focus of this data was to help empirically the effects of strategic orientation on open innovation through dynamic capabilities. A cross-sectional field survey with a quantitative approach was applied to collect this data. Data on 364 SMEs operating in the study area was collected.
DOI: 10.6084/m9.figshare.12472646.v9
title: Dust, SST, and Productivity Data for ODP 1208A and ODP 885/886 (Abell et al., 2021 - Nature)

description: These Excel files contain all of the elemental, isotopic, export productivity, and SST data for ODP sites 1208 and 885/886 associated with Abell et al., "Poleward and weakened westerlies during Pliocene warmth". **Please use updated excel file V4 found in Version 9 of this figshare file.<br> <br> <br> Please cite: Abell et al., (2021) <em>Nature </em>589, 70-75. https://doi.org/10.1038/s41586-020-03062-1.
DOI: 10.6084/m9.figshare.23668152.v2
title: Manuscript Datasets

description: Seperate .csv files for research-grade and needs-id data used in manuscript.
DOI: 10.6084/m9.figshare.3569091.v1
title: Appendix A. Peak detection in age-structure data.

description: Peak detection in age-structure data.
DOI: 10.6084/m9.figshare.c.3672718_d6.v1
title: Additional file 7: of Prognostic and therapeutic value of disruptor of telomeric silencing-1-like (DOT1L) expression in patients with ovarian cancer

description: Possible target genes of DOT1L analyzed from DOT1L ChIP-seq. (XLSX 854 kb)
DOI: 10.6084/m9.figshare.25513525.v1
title: <b>Upper Limit of Outer Belt Electron Acceleration and Their Controlling </b><b>Geomagnetic Conditions: A Comparison of Storm and Non-Storm events</b>

description: This is the dataset used to produce figures for the paper under review with the title of "Upper Limit of Outer Belt Electron Acceleration and Their Controlling Geomagnetic Conditions: A Comparison of Storm and Non-Storm events".
DOI: 10.60893/figshare.jor.27060919.v1
title: Supplemental Information

description: Supplemental material, several figures that we refer to in the main paper
DOI: 10.17632/7md9bgd4tg
title: CUP- Convolutional Neural Network Training dataset

description: The dataset has been provided for training a convolutional neural network to measure some selected visual design principles. These visual principles are related to the preference matrix which is adopted from Kaplan and Kaplan (1989). The dataset is contained of images that illustrate the considered variables as obviously as possible and the CNN trained by them can be used for analysis in fields of art and architecture. CUP is the short form of contrast, unity, and proportion. 
3 types of complementary color contrasts, 2 types of warm/cold contrasts, light/dark contrast, similarity in color and variety in form , proportion and similarity in form and variety in color.
The dataset is a collection of images found in the search through google and pinterest, and some of them may be subject to copyright. For such images, the copyright of all the images belongs to the image owners.
DOI: 10.6084/m9.figshare.28816433.v1
title: Global air-sea turbulent heat fluxes (sensible heat flux and latent heat flux) dataset from 1993 to 2017

description: This dataset provides global estimates of air-sea turbulent heat fluxes derived using the Bowen ratio-constrained Neural Network technique. The validation against the observations collected from 197 globally distributed buoys showed that the dataset achieved root mean square errors of 6.05 W/m<sup>2</sup>, 23.67 W/m<sup>2</sup> and 0.22 and correlation coefficients of 0.93, 0.91 and 0.25 for the sensible heat flux, latent heat flux and Bowen ratio, respectively. The dataset contains the global 0.25° daily air-sea sensible heat flux and latent heat flux from 1993 to 2017. Data are stored in NetCDF (.nc) files in a monthly interval, naming BrTHF_Monthly.Ayyyymm.nc, where yyyy represents the year and mm represents the month.<br>Please cite reference bellow:Wang, Y., Tang, R., Huang, L., Liu, M., Jiang, Y., and Li, Z.-L.: A Bowen ratio-informed method for coordinating the estimates of air–sea turbulent heat fluxes, Environmental Research Letters, 19, 10.1088/1748-9326/ad9341, 2024.
DOI: 10.6084/m9.figshare.5285512.v3
title: How to make your research open access? For free and legally.

description: The infographic shows how to achieve 100% Open Access for free and legally.
DOI: 10.17632/nbhg9gbcnt
title: Dataset for occupant behavior and energy consumption in residential buildings in a subtropical climate city, Santa Maria, Brazil

description: Data from a questionnaire conducted in Santa Maria, Brazil, among residents of multifamily buildings with up to three bedrooms, aimed at characterizing occupant behavior and residential energy use.
DOI: 10.17632/nvk5bf3m2f
title: Chaos game representation dataset of SARS-CoV-2 nucleotide sequences

description: The dataset provides a chaos game representation (CGR) of SARS-CoV-2 virus nucleotide sequences. The dataset is composed of 1557 virus instances of SARS-CoV-2. In addition, the dataset also provides a CGR representation of 11540 viruses from the Virus-Host DB dataset and the other three Riboviria viruses from NCBI.
DOI: 10.6084/m9.figshare.24212955.v1
title: Spatiotemporal_Variables.zip

description: Spatiotemporal variables for all trials
DOI: 10.17632/t9tkghy3w6
title: Data for:Reconstructing the source and growth of the Makran Accretionary Complex: Constraints from detrital zircon U-Pb geochronology

description: Supporting information for this paper includes: Figure S1- Plane and crossed polarized light microphotographs of the analyzed samples. Figure S2- Classification of the detrital sandstones from the Makran ophiolitic complex in the provenance discrimination diagrams. Figure S3- Concordia diagrams of samples 16R59,16R64, 16R65, 16R67 from the Makran ophiolitic mélange. Figure S4- Concordia diagrams of samples, 16R68, 16R80, 16R84and 16R86 from the Makran ophiolitic mélange. Table S1- Sandstone framework model for detritus of Makran ophiolitic mélange complex. Table S2- Zircon U-Pb age data for the OMC detrital zircons. Table S3- Zircon Lu-Hf isotope data and model ages for the OMC detrital zircons.
DOI: 10.6084/m9.figshare.14061533.v1
title: english arabic glossary of collocations.xlsx

description: English Arabic glossary of collocations
DOI: 10.6084/m9.figshare.14540355.v1
title: Supplementary Material for: Neoadjuvant Systemic Chemotherapy in Sebaceous Gland Carcinoma of the Eyelid: A Retrospective Study

description: There are sparse data on neoadjuvant systemic chemotherapy (NACT) in eyelid sebaceous gland carcinoma (SGC). The aim of this study was to evaluate efficacy and outcomes with NACT in eyelid SGC. We retrospectively analyzed 8 patients who received platinum-based NACT. The median number of cycles per patient was 4 (range, 3–5). The mean percentage reduction of tumor diameter after NACT was 71% (range, 30–100%). Two patients had a radiological complete response (CR). After NACT, surgical treatment for residual tumor was performed in 5 cases. One patient had a pathological CR and is recurrence free for 11 years. After a mean follow-up period of 44.5 months (range, 9–109), tumor recurrence occurred in 4 cases. Among these 4 cases, 3 were rechallenged with the same regimen and all responded. Systemic NACT has a role in eyelid SGC, downstages the tumor, and allows less aggressive and organ-sparing surgeries, warranting a prospective study.
DOI: 10.6084/m9.figshare.21743552.v1
title: Code and data for "Relative density clouds: Visualizing and exploring multivariate patterns of group differences"

description: R code and data for: <br> Del Giudice, M. (2023). Relative density clouds: Visualizing and exploring multivariate patterns of group differences. PLoS ONE.
DOI: 10.6084/m9.figshare.28347662.v1
title: PEMSD8

description: Traffic datasets for ICCPS "Uncertainty Quantification for Physics-Informed Traffic Graph Networks"
DOI: 10.6084/m9.figshare.4751281.v1
title: Data Set S1 from Seasonal body size reductions with warming covary with major body size gradients in arthropod species

description: Seasonal temperature-body size data used in this study.
DOI: 10.17632/4vm9fhyvh3
title: KANTBP 3.1: A program for computing energy levels, reflection and transmission matrices, and corresponding wave functions in the coupled-channel and adiabatic approaches

description: A FORTRAN program for calculating energy values, reflection and transmission matrices, and corresponding wave functions in a coupled-channel approximation of the adiabatic approach is presented. In this approach, a multidimensional Schrödinger equation is reduced to a system of the coupled second-order ordinary differential equations on a finite interval with the homogeneous boundary conditions of the third type at left- and right-boundary points for the discrete spectrum and scattering problems. The resulting system of such equations, containing potential matrix elements and first-derivative coupling terms is solved using high-order accuracy approximations of the finite element method. The scattering problem is solved with non-diagonal potential matrix elements in the left and/or right asymptotic regions and different left and right threshold values. Benchmark calculations for the fusion cross sections of 36S+48Ca, 64Ni+100Mo reactions are presented. As a test desk, the program is applied to the calculation of the reflection and transmission matrices and corresponding wave functions of the exact solvable wave-guide model, and also the fusion cross sections and mean angular momenta of the 16O+144Sm reaction.
DOI: 10.6084/m9.figshare.16778674.v1
title: Supplementary Tables.xlsx

description: Metabolome and Proteopme analyses with bovine serum.<br><b>Table S1:</b> Metabolome analysis with bovine serum on pregnant days 17, 20, and 22.<b>Table S2:</b> Metabolome analysis with bovine serum on cyclic days 0, 7, 14, and 17.<br><b>Table S3:</b> iTRAQ analysis with bovine serum on pregnant day 20.<br><b>Table S4:</b> iTRAQ analysis with bovine serum on pregnant day 22.<br>
DOI: 10.6084/m9.figshare.7430846.v1
title: Dataset - GAD study

description: The dataset refers to a study which investigated how different aspects of positive functioning (mindfulness, emotional intelligence, and PWB) were associated with various aspects of negative functioning (brooding, worry, and anxiety symptoms) in GAD patients.
DOI: 10.17632/9b725x7mvb
title: Resting heart rate

description: Summary statistics of the GWAS on resting heart rate. Included in this folder are:

1. RHR_UKB.all.gz						: The GWAS of resting heart rate in the UK Biobank
2. RHR_ICRHR_all.top10000.gz			: The 10.000 SNPs with the lowest P-values of the GWAS meta-analysis of the 99 cohorts that contributed to the IC-RHR
3. RHR_ICRHR_without23andme.gz		: The GWAS meta-analysis of 98 cohorts that contributed to the IC-RHR, excluding 23andME (N=51.039)
4. RHR_UKBplusICRHR_all.top10000		: The 10.000 SNPs with the lowest P-values of the GWAS meta-analysis of the UK Biobank and IC-RHR
5. RHR_UKBplusICRHR.all.gz			: The GWAS meta-analysis of the UK Biobank and IC-RHR, excluding 23andME (N=51.039)
DOI: 10.6084/m9.figshare.25287826.v2
title: Atomistic configurations of Li<sub>2</sub>Mn<sub>1-x</sub>Ru<sub>x</sub>O<sub>3</sub> (x = 0, 0.1, 0.15, 0.2) models

description: The (131) surface model of Li<sub>2</sub>MnO<sub>3</sub> was constructed by a six-layer close-packed <i>p</i> (2*1) with 72 O atoms, 48 Li atoms and 24 Mn atoms. As the Ru and Mn doping ratio is defined as the number of doping atoms divided by the total number of atoms, the doping numbers of 2 Ru, 4 Ru, 6 Ru atoms were used to approximately simulating x = 0.1, 0.15 and 0.2 heteroatomic content in single phase Li<sub>2</sub>Mn<sub>1-x</sub>Ru<sub>x</sub>O<sub>3</sub> samples, respectively.To accurately represent the Li<sub>2</sub>RuO<sub>3</sub> model system, a new Li<sub>2</sub>RuO<sub>3</sub> model was developed based on the refined structure obtained from X-ray diffraction (XRD) data [<i>Nat. Mater.</i> <b>12</b>, 827-835 (2013);<i> Solid State lonics</i> <b>82</b>, 25-31 (1995); <i>Sci. Rep.</i> <b>9</b>, 550 (2019)], and was investigated on the strongest peak intensity of XRD pattern.
DOI: 10.6084/m9.figshare.28812476.v1
title: Vibration-based Gearbox Fault Diagnosis Dataset

description: Supporting dataset for the article named "Vibration-based gearbox fault diagnosis using a multi-scale convolutional neural network with depth-wise feature concatenation"
DOI: 10.6084/m9.figshare.28855505.v1
title: Clinical data of enrolled patients

description: The dataset contains the baseline characteristics and follow-up outcomes of enrolled patients.
DOI: 10.17632/wwbvg75g3j
title: A Model for Theory of Supply Chain Management through Knowledge Management

description: This supplementary material includes the Model managers need to implement the Theory of Supply Chain Management by Knowledge Management