cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21601311.v1
title: Supplementary Material for: Sternocleidomastoid Muscle Thickness Correlates with Exercise Tolerance in Patients with COPD

description: <b><i>Background:</i></b> Patients with chronic obstructive pulmonary disease (COPD) have difficulties inhaling as the diaphragm becomes flattened and weakened due to lung hyperinflation. This weakened respiratory function is compensated for by the increased activity of the accessory respiratory muscles, such as the sternocleidomastoid muscle (SCM). <b><i>Objectives:</i></b> This study aimed to evaluate the difference in the SCM thickening fraction (SCM TF) of each respiratory phase (end-expiration, resting inspiration, and end-inspiration), as measured using ultrasonography (US), between patients with COPD and control subjects. We also evaluate the correlation between the SCM TF of each respiratory phase and exercise tolerance in patients with COPD. <b><i>Methods:</i></b> Patients with COPD (<i>n</i> = 44) and age-matched controls (<i>n</i> = 20) underwent US for determination of the SCM TF. Ventilation parameters, including the peak oxygen uptake (peak VO<sub>2</sub>) and the change in the inspiratory capacity, were measured during cardiopulmonary exercise testing. The SCM thickness and TF was measured during end-expiration, resting breathing, and end-inspiration. <b><i>Results:</i></b> The SCM was significantly thinner in patients with COPD than in controls at end-expiration. The increase in the SCM TF from end-expiration to end-inspiration in patients with COPD did not differ significantly from that in control subjects. In contrast, the SCM TF from end-expiration to resting inspiration was significantly greater in patients with COPD than in control subjects. The peak VO<sub>2</sub> was strongly positively correlated with the SCM TF from end-expiration to end-inspiration in patients with COPD (<i>r</i> = 0.71, <i>p</i> &lt; 0.01). <b><i>Conclusions:</i></b> The SCM may be thinner in patients with COPD than in controls. The SCM TF may also be associated with exercise tolerance.
DOI: 10.6084/m9.figshare.28597160.v1
title: GI-00308-2024. PP1 an PP2. AJP. Supplemental material.docx

description: GI-00308-2024. PP1 an PP2. AJP. Supplemental material
DOI: 10.25403/upresearchdata.27241188.v1
title: Perceptions and adaptation analysis of smallholder farmers to climate change using binary and multinomial logistic regression models

description: This study explores farmers' perceptions of climate change and their adaptation responses in the Mendefera and Debarwa sub-zones of Eritrea's Debub region. It focuses on rainfall and temperature shifts affecting agricultural productivity. The dataset comprises survey responses from 314 farmers, capturing a range of variables categorised by personal characteristics, perception responses, adaptation preferences, and socio-economic responses, alongside historical climate data on rainfall and temperature trends. Personal characteristics include demographic and socio-economic factors, such as age, gender, education, household income, and farming experience, which are crucial for analysing which factors most influence farmers' awareness and adaptation decisions. 
<br>
Perception responses detail farmers' observations of changes in climate patterns, especially rainfall and temperature fluctuations, providing insight into how climate changes are locally recognised. Adaptational preference responses highlight the types of adaptation strategies farmers have implemented or prefer, such as crop diversification, soil conservation, and small-scale irrigation, revealing the practicality and accessibility of specific measures. Socio-economic responses capture the impact of climate change on farming activities, the challenges faced in adapting, and barriers to implementing strategies, thus shedding light on broader economic and social pressures within the community. Additionally, climate data, recorded in Excel, documents historical rainfall and temperature trends, allowing for a comparison between farmers' perceptions and actual climate records. These datasets provide a comprehensive foundation for analysing the determinants of adaptation responses to mitigate climate change's impact on agriculture in Eritrea.
DOI: 10.6084/m9.figshare.16777729.v1
title: Pollination generalization and reproductive assurance by selfing in a tropical montane ecosystem

description: Data linked to the following article:Bergamo PJ, Streher NS, Zambon V, Wolowski M, Sazima M. 2021. Pollination generalization and reproductive assurance by selfing in a tropical montane ecosystem. The Science of Nature, DOI: 10.1007/s00114-021-01764-8<br>'data.xlsx' contains data of floral reflectance, floral size, anther height and pollinator group for all plant species<br>'species_list.xlsx' contains corrected species names, habitat endemism, conservation status and pollinator-dependence data
DOI: 10.6084/m9.figshare.22691389.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.25122977.v1
title: Integrated transcriptomic and metabolomic analysis provides insights into the responses to Vibrio infection in Plectropomus leopardus

description: Transcriptome and metabolome study of <i>Plectropomus leopardus </i>against <i>Vibrio harvey</i>'s disease
DOI: 10.17632/rfg6br6jsv
title: Integration of Vlasov equation by a fast Fourier Eulerian code

description: Abstract A program computing the Vlasov-Poisson system in one dimension is presented. The method is based on time splitting, exact solution of the resulting equations and shift in phase space by FFT. Title of program: VLFF Catalogue Id: ABHD_v1_0 Nature of problem We look for a solution of the one dimensional Vlasov-Poisson system for a non collisional spatially periodic plasma, starting from an initial condition, here a two stream distribution function or an n holes BGK equilibrium, slightly perturbed. Versions of this program held in the CPC repository in Mendeley Data ABHD_v1_0; VLFF; 10.1016/0010-4655(89)90112-4 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.6084/m9.figshare.28600847.v1
title: Dual-deconvolution algorithm: Analysis code with experimental data

description: This software package provides key algorithms for dual-deconvolution microscopy analysis, along with both experimental and numerical data. The dual-deconvolution algorithm is an advanced deep-tissue imaging technique designed to measure fluorescence signals from thick, aberrated samples. It incorporates virtual structured illumination microscopy (SIM) and computational adaptive optics to achieve super-resolution imaging. The package includes comprehensive algorithm implementations and data to facilitate the broader adoption of dual-deconvolution in deep-tissue imaging applications. <br>The reference URL available on the archive: : https://doi.org/10.48550/arXiv.2404.11849<br>The code has been validated for use in MATLAB R2020a, R2021a, R2022a, R2023a, R2024a, R2024b, and R2025a environments. Two essential toolboxes must be installed during the MATLAB installation process: the Signal Processing Toolbox and the Image Processing Toolbox.All code and datasets have been developed and tested by Seok-chan Yoon (Pusan University) and Su-min Lim (Korea University), members of the Super-Depth Imaging Group (https://www.bioimaging.korea.ac.kr/).
DOI: 10.6084/m9.figshare.9248786.v1
title: RVOT&LVOT Diagnosis

description: The 12-lead ECG data analysis is a reliable tool to ascertain the locations of premature ventricular contractions or ventricular tachycardia and determine the locations of subsequent catheter ablation procedure. The majority of idiopathic ventricular arrhythmia, outflow tract ventricular arrhythmia stem from either the right ventricular outflow tract or the left ventricular outflow tract. We created a new 12-lead ECG database that was created under the auspices of Chapman University and Ningbo First Hospital of Zhejiang University with the intention to provide high quality evidence revealing the distinction between idiopathic ventricular arrhythmia from right ventricular outflow tract to left ventricular outflow tract. The dataset contains 334 subjects who not only experienced idiopathic premature ventricular contractions or ventricular tachycardia but also had successfully undergone a catheter ablation procedure that validated the accurate origins of idiopathic ventricular arrhythmia.
DOI: 10.17632/dxzf29ttyh
title: UW Indoor Scenes (UW-IS) Dataset

description: UW Indoor Scenes (UW-IS) dataset is an RGB dataset for evaluating object recognition performance in multiple, typical indoor environments. The UW-IS dataset consists of indoor scenes taken in two completely different environments. The first environment is a living room scene where objects are placed on a tabletop. The second environment is a mock warehouse setup where objects are placed on a shelf. We select a fixed set of fourteen different objects from the benchmark Yale-CMU-Berkeley (YCB) object and model set for our dataset. For the living room environment, we have a total of 347 scene images. The images are taken in four different illumination settings from three different camera perspectives and varying distances up to two meters. Sixteen out of the 347 scene images are with two different objects, 135 images are with three different objects, 156 images are with four different objects, and 40 images are with five different objects. For the mock warehouse environment, we have a total of 200 scene images taken from distances up to 1.6 meters. Sixty out of 200 images are images with three different objects, 68 images with four different objects, and 72 images are with five different objects.
DOI: 10.17632/v5rf8ryc63
title: Passive design explorer

description: A Python package and Grasshopper example files for running a pre-trained Mixture of Experts (MoE) surrogate model to predict building heating and cooling EUI in real time.
The generalized and modular MoE model is developed to support complex, multi-zone office building designs under various climatic conditions.

1. Python Package:

The dataset includes a snapshot of the initial release of the Python package and MoE model (v0.1.0), which is still under development.

The package contains:
- A pre-trained surrogate model file
- A scaler object for input feature normalization
- Source code for parametric model translation, features extraction, prediction, and integration with Grasshopper.

Refer to the README.md file for full installation and usage instructions.

2. Grasshopper example files:

These example files demonstrate a unified modeling and prediction platform.
The parametric models follow the Honeybee modeling workflow and can be evaluated using either EnergyPlus or the surrogate model.
Ladybug Tools and Hops plugins for Grasshopper are required.
The final model is serialized into a '.hbpkl' file and passed to the 'hops' component for processing.

Note: The parametric model is designed to predict a single building (comprising multiple zones) at a time. To enable batch prediction for multiple buildings (e.g., for evolutionary optimization), the Grasshopper definition and the server.py script can be modified accordingly.

Refer to the README.md file for usage instructions.
DOI: 10.6084/m9.figshare.28735508.v2
title: Data Set for Can Climate Change Save the Plastic World.xlsx

description: Raw Data for <b>Can Climate Change Perceptions Drive Plastic Policy Support? Effects of Climate Change Skepticism, Guilt, and Efficacy on the Acceptance of the Plastic Tax</b>
DOI: 10.6084/m9.figshare.3444917.v4
title: NEON Data Institute 2016 - PowerPoint Presentations

description: Presentation given at the 2016 data institute.<br>
DOI: 10.6084/m9.figshare.7445582.v1
title: STEM_birth_death_trees

description: This file contains the tree files (birth death) for the calibrated test using only the stem penguin calibration point, using Phoebastria albatrus as the outgroup.
DOI: 10.6084/m9.figshare.28074941.v3
title: Replication Materials for "The Pivot Penalty in Research"

description: Replication Package for "The Pivot Penalty in Research"By Ryan Hill, Yian Yin, Carolyn Stein, Xizhao Wang, Dashun Wang, and Benjamin F. JonesAbstract:Scientists and inventors set the direction of their work amidst evolving questions, opportunities, and challenges, yet the extent to which research directions are adaptable remains unclear. Theories of creative search highlight the potential benefits of exploration but also emphasize difficulties in moving beyond one’s expertise. Here we introduce a measurement framework to quantify how far researchers move from their existing work and apply it to millions of papers and patents. We find a pervasive “pivot penalty”, where the impact of new research steeply declines the further a researcher moves from their prior work. The pivot penalty applies nearly universally across science and patenting and has been growing in magnitude over the past five decades. Larger pivots further exhibit weak engagement with established mixtures of prior knowledge, lower publication success rates, and less market impact. Unexpected shocks to the research landscape, which may push researchers away from existing areas or pull them into new ones, further demonstrate substantial pivot penalties, including in the context of the COVID-19 pandemic. The pivot penalty generalizes across fields, career stage, productivity, collaboration, and funding contexts, highlighting both the breadth and depth of the adaptive challenge. Overall, the findings point to large and increasing challenges in adapting to new opportunities and threats, with implications for individual researchers, research organizations, science policy, and the capacity of science and society as a whole to confront emergent demands.
DOI: 10.17632/j3zfnxk56h
title: Dataset for Flight Departure Delay Prediction

description: This dataset was utilized in the research for the flight departure delay prediction.
DOI: 10.6084/m9.figshare.2069274.v16
title: Bruna et al. A biobank of breast cancer explants with preserved intra-tumor heterogeneity to screen anticancer compounds. Cell, 2016

description: Normalised tables for molecular features of the patient-derived tumour xenograft models (PDTXs) from Bruna et al.
DOI: 10.17632/5tbzbws3xw
title: PuBe neuton spectra

description: Neutron spectrum for PuBe source 54/02-107-6228 at IFIN-HH, Romania Full neutron spectrum, neutron spectrum in coincidence with the 4.4 MeV gamma ray, neutron spectrum to the ground state without gamma coincidence Smoothed once using algorithm 353QH P.-A. Söderström, Characterization of a plutonium-beryllium neutron source, Appl. Radiat. Isot., submitted
DOI: 10.5281/zenodo.15541749
title: A Delayed Return Stroke Driven by Channel Charge Accumulation

description: In a manuscript entitled “A Delayed Return Stroke Driven by Channel Charge Accumulation”, we used VHF interferometers and fast/slow antennas to study an anomalous subsequent return stroke process (Delayed Return Stroke) during a "bolt-from-the-blue" lightning flash that occurred on the Qinghai-Tibet Plateau. The data supports the aforementioned manuscript.
DOI: 10.17605/osf.io/x7nfw
title: NeuAge_OLD

description: This is the NeuAge_OLD Data Reposity containing all example and training data related to NeuAge
DOI: 10.5281/zenodo.15541748
title: A Delayed Return Stroke Driven by Channel Charge Accumulation

description: In a manuscript entitled “A Delayed Return Stroke Driven by Channel Charge Accumulation”, we used VHF interferometers and fast/slow antennas to study an anomalous subsequent return stroke process (Delayed Return Stroke) during a "bolt-from-the-blue" lightning flash that occurred on the Qinghai-Tibet Plateau. The data supports the aforementioned manuscript.
DOI: 10.5281/zenodo.15568058
title: A Delayed Return Stroke Driven by Channel Charge Accumulation

description: In a manuscript entitled “A Delayed Return Stroke Driven by Channel Charge Accumulation”, we used VHF interferometers and fast/slow antennas to study an anomalous subsequent return stroke process (Delayed Return Stroke) during a "bolt-from-the-blue" lightning flash that occurred on the Qinghai-Tibet Plateau. The data supports the aforementioned manuscript.
DOI: 10.6084/m9.figshare.13633880.v3
title: 28 years annual maps of lakes with area larger than 10 km2 on the TP (1991-2018)

description: We produced annual big lake maps contains lakes larger than 10 km2 on the TP from 1991 to 2018, by using the Landsat satellite imagery and cloud computing platform (Google Earth Engine).
DOI: 10.6084/m9.figshare.22641031.v1
title: CamoTSS test data

description: This compressed file includes test file for CamoTSS.
DOI: 10.17632/wx53pr8hvf
title: Data, programs and instructions to replicate “Price gaps at the border: evidence from multi-country household scanner data” (2020).

description: Data, programs and instructions to replicate “Price gaps at the border: evidence from multi-country household scanner data” (2020) by Guenter W. Beck, Hans-Helmut Kotz and Natalia Zabelina.
DOI: 10.6084/m9.figshare.25234021.v1
title: Sequences of 1.600 viral contigs and 62 de-replicated metagenome-assembled genomes

description: Globally novel and locally diverse viruses inhabiting deep-sea seamount sedimentsviral contigs and MAGs<br><br>
DOI: 10.6084/m9.figshare.28831109.v1
title: Sample_data.csv

description: raw radar data sample from the Hula valley produced under BirdScan MR1 software 1.7
DOI: 10.6084/m9.figshare.7831544.v1
title: Supplementary Material for: Calbindin-1 Expression in the Hippocampus following Neonatal Hypoxia-Ischemia and Therapeutic Hypothermia and Deficits in Spatial Memory

description: Hippocampal injury following neonatal hypoxia-ischemia (HI) leads to memory impairments despite therapeutic hypothermia (TH). In the hippocampus, the expression of calbindin-1 (Calb1), a Ca<sup>2+</sup>-buffering protein, increases during postnatal development and decreases with aging and neurodegenerative disorders. Since persistent Ca<sup>2+</sup> dysregulation after HI may lead to ongoing injury, persistent changes in hippocampal expression of Calb1 may contribute to memory impairments after neonatal HI. We hypothesized that, despite TH, neonatal HI persistently decreases Calb1 expression in the hippocampus, a change associated with memory deficits in the mouse. We induced cerebral HI in C57BL6 mice at postnatal day 10 (P10) with right carotid ligation and 45 min of hypoxia (FiO<sub>2</sub> = 0.08), followed by normothermia (36°C, NT) or TH (31°C) for 4 h with anesthesia-shams as controls. Nissl staining and glial fibrillary acidic protein (GFAP) immunohistochemistry (IHC) were used to grade brain injury and astrogliosis at P11, P18, and P40 prior to the assessment of Calb1 expression by IHC. The subset of mice followed to P40 also performed a memory behavior task (Y-maze) at P22–P26. Nonparametric statistics stratified by sex were applied. In both anterior and posterior coronal brain sections, hippocampal Calb1 expression doubled between P11 and P40 due to an increase in the cornus ammonis (CA) field (Kruskal-Wallis [KW] <i>p</i> &lt; 0.001) and not the dentate gyrus (DG). Neonatal HI produced delayed (P18) and late (P40) deficits in the expression of Calb1 exclusively in the CA field (KW <i>p</i> = 0.02) in posterior brain sections. TH did not attenuate Calb1 deficits after HI. Thirty days after HI injury (at P40), GFAP scores in the hippocampus (<i>p</i> &lt; 0.001, <i>r</i> = –0.47) and CA field (<i>p</i> &lt; 0.001, <i>r</i> = –0.39) of posterior brain sections inversely correlated with their respective Calb1 expression. Both sexes demonstrated deficits in Y-maze testing, including approximately 40% lower spontaneous alterations performance and twice as much total impairment compared to sham mice (KW <i>p</i> &lt; 0.001), but it was only in females that these deficits correlated with the Calb1 expression in the hippocampal CA field (<i>p</i> &lt; 0.05) of the posterior sections. Hippocampal atrophy after neonatal HI also correlated with worse deficits in Y-maze testing, but it did not predict Calb1 deficits. Neonatal HI produces a long-lasting Calb1 deficit in the hippocampal CA field during development, which is not mitigated by TH. Late Calb1 deficit after HI may be the result of persistent astrogliosis and can lead to memory impairment, particularly in female mice.
DOI: 10.17632/kt7m97t7zg
title: Evaporation of levitating microdroplets containing luminescent Gd2O3:Nd3+ nanoparticles (also with Fe-Co nanoparticles)

description: Microdroplets of suspension were levitated in a linear quadrupole trap and studied as described e.g. in Y. Shopa et al., JQSRT 296 (2023). The suspended phase consisted of nanoparticles of Gd2O3:Nd3+ of several sizes and concentrations. In a few experiments, Fe-Co nanoparticles of ~1 micrometre diameter were also added. The continuous phase consisted of diethylene (2EG) and tetraethylene (4EG) glycols as well as dimethyl sulfoxide (DMSO). Experiments with droplets of pure liquids and suspensions of only Fe-Co nanoparticles were performed for comparison. The data is divided into the folders correspondingly. Luminescence was excited with an 806 nm diode laser (CW, ~1.5 W). A group of 6 luminescence lines were visible in IR: 879, 892, 894, 911, 927, and 942. We also followed the temporal evolution of several lines in scattering at the right angle (usually 806 nm (IR laser) and 662 nm (additional red laser)). Sometimes also 443, 523, 631, 650, 772, 786 and 853 nm (back-light LEDs, non-coherent parts of laser lines and others of immediate interest): files *-Spectra.csv, where * (in hh_mm_ss format) always denotes the time of measurement file creation. Simultaneously the shadow image of the droplet was recorded (non-coherent light, 631 nm LED). The droplet radius was measured by fitting an ellipse to the shadow edge. The ellipse parameters temporal evolution are stored in *-Shadow.pdf files: time, mean diameter (mean of the ellipse axes), long axis rotation, X and Y of the centre, long and short axis, border length, X and Y of “the centre of mass” of the border, fitting error. The microdroplet's vertical position was stabilised with a DC field. The corresponding voltage variation and other stabilisation system parameters are stored in *.csv files: KeyStab: 0 – stabilisation off, 2 – on, k_PID – proportionality parameter of the software voltage regulator, freq – trapping AC field frequency. In some cases, partially concurrently, light was collected at a right angle with a PMT for the green 512 or 806 nm laser. The photon count rate is stored in *-CRM.csv files. Time stored in corresponding files was synchronised. The "Laser on/off" pertains to the 806 nm laser. Further details can be found in the readme.txt files in the corresponding folder. (No)_th_spectrum.csv represents the ith recorded spectrum from the corresponding experiment. The parameters of sample DI119 can be found in the paper cited above. The parameters of samples DI163 and DI230 can be found in the .ppt files in the root directory.
DOI: 10.17632/zg3b9p85k4
title: A Taxonomic Key to Mealybugs (Hemiptera: Coccomorpha: Pseudococcidae) of Florida, United States

description: Figure 1. Generalized diagrammatic illustration depicting the morphological structures of the mealybug family, Pseudococcidae. In the figure, c = cerarius.