cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5bn9xd1m
title: MassIVE MSV000092384 - A non-canonical repressor function of JUN restrains YAP activity and suppresses YAP-dependent liver cancer growth
title: The transcriptional coactivators YAP/TAZ are the critical downstream regulators of the Hippo pathway that regulate gene expression in response to changes in pathway activity, mainly by binding to TEAD transcription factors. Uncontrolled transcriptional output of YAP/TAZ can lead to rapid induction of aggressive tumor growth. AP-1 is a dimeric basic leucine zipper (bZIP) transcription factor complex with JUN and FOS proteins being the most abundant members of this family. Unlike FOS, JUN can also form homodimers, but in the cell, JUN presumably preferentially forms heterodimers with members of the FOS family, which act as potent transcriptional activators. Previous studies identified substantial co-occupancy of YAP/TAZ and AP-1 at genomic sites, and they demonstrated that JUN/FOS heterodimers cooperate with the YAP/TAZ and TEAD transcription factors to drive YAP/TAZ target gene expression. Here, we now elucidate a negative feedback mechanism in which high YAP activity is restrained by the recruitment of homodimeric JUN::JUN/NCOR1 repressor complexes and show that this noncanonical JUN function is part of a tumor suppressor mechanism in the liver.
DOI: 10.5281/zenodo.8127717
title: Guppy pre-miRNAs (unfiltered set)

description: Initial (pre-filtered) set of pre-miRNAs from three tissues - brain, ovary and testis.
DOI: 10.5281/zenodo.8127716
title: Guppy pre-miRNAs (unfiltered set)

description: Initial (pre-filtered) set of pre-miRNAs from three tissues - brain, ovary and testis.
DOI: 10.6084/m9.figshare.23650608
title: Network Dissocation Data

description: De-identified data of network analysis of peritraumatic dissociation and subsequent reexperiencing symptoms of PTSD
DOI: 10.5519/qd.upzx8n62
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (689741 records)
DOI: 10.5519/qd.bdgbct4f
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (73005 records)
DOI: 10.5281/zenodo.8127726
title: Calculating the Stability of Different Surfaces of GaAsxP1−x Mixed-Crystals using the Virtual Crystal Approximation

description: Data necessary to reproduce all figures in the paper.
DOI: 10.5281/zenodo.8127725
title: Calculating the Stability of Different Surfaces of GaAsxP1−x Mixed-Crystals using the Virtual Crystal Approximation

description: Data necessary to reproduce all figures in the paper.
DOI: 10.34740/kaggle/dsv/6104350
title: Indian Political parties (1952 - 2014)
DOI: 10.34740/kaggle/dsv/6104379
title: 2021 World Population (updated daily)
DOI: 10.34740/kaggle/dsv/6104380
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.5281/zenodo.8127755
title: Metadaten der OHDSI Studien

description: Diese Datei enthält die Metainformation der im Rahmen der Dissertation von Ines Reinecke durchgeführten Analyse der OHDSI Studien.
DOI: 10.5281/zenodo.8127754
title: Metadaten der OHDSI Studien

description: Diese Datei enthält die Metainformation der im Rahmen der Dissertation von Ines Reinecke durchgeführten Analyse der OHDSI Studien.
DOI: 10.5281/zenodo.8127631
title: aging project dataset

description: Web databases for aging project
DOI: 10.5281/zenodo.8127630
title: aging project dataset

description: Web databases for aging project
DOI: 10.5281/zenodo.8127734
title: Data set for the ensemble postprocessing of 2m surface temperature forecasts in Germany for 24 hours lead time

description: Full data set for the ensemble postprocessing of 2m surface temperature forecasts at 462 observation stations in Germany for 24 hours lead time in the years 2015-2020. The data set is provided in .Rdata format supported by the statistical software R. The ensemble forecasts are retrieved from ECMWF and the observation data from the German Weather Service (DWD). <br> <br> For more information about the data set see: https://github.com/jobstdavid/paper_gamvinereg
DOI: 10.5281/zenodo.8127733
title: Data set for the ensemble postprocessing of 2m surface temperature forecasts in Germany for 24 hours lead time

description: Full data set for the ensemble postprocessing of 2m surface temperature forecasts at 462 observation stations in Germany for 24 hours lead time in the years 2015-2020. The data set is provided in .Rdata format supported by the statistical software R. The ensemble forecasts are retrieved from ECMWF and the observation data from the German Weather Service (DWD). <br> <br> For more information about the data set see: https://github.com/jobstdavid/paper_gamvinereg
DOI: 10.5281/zenodo.7976200
title: Stellar properties of observed stars stripped in binaries in the Magellanic Clouds - Spectral Models

description: This Zenodo repository is one of three Zenodo repositories related to the article "Stellar properties of observed stars stripped in binaries in the Magellanic Clouds" by Y. Götberg, M.R. Drout, A.P. Ji, J.H. Groh, B.A. Ludwig, P.A. Crowther, N. Smith, A. de Koter, and S.E. de Mink. In the article, we analyze the optical spectra of ten stars and measure their stellar properties using spectral fitting. This repository contains the full spectral model grid computed using the 1D non-LTE radiative transfer code CMFGEN (see Hillier & Miller 1998 and http://kookaburra.phyast.pitt.edu/hillier/web/CMFGEN.htm). The grid spans three parameters: temperature, surface gravity, and surface hydrogen mass fraction (which also sets the surface helium mass fraction; Y = 1 - X - Z). See Section 4.1 for more details. Below, we describe the content presented here in more detail: <strong>0_ReadMe.txt</strong>: A text file where we describe some more details regarding the content. <strong>S41_spectral_model_grid_parameters.txt (95 KB):</strong> A table containing relevant parameter information for each model in the spectral model grid presented in Section 4.1. <strong>S41_spectra_spectral_model_grid.tar.gz (479MB)</strong>: A .tar.gz containing the spectral energy distributions and normalized spectra in a text file for each model. The full CMFGEN models are provided as well (see below). This .tar.gz becomes 3.2 GB when inflated. Complete CMFGEN models for the full spectral model grid. Because of the size of these models, we group them into tarballs with one surface hydrogen mass fraction and one effective temperature, labeled for example <strong>XHs0.01_T40000.tar.gz</strong> (that is, this tarball contains a set of models with different surface gravity). Each of these have a size of ~1-3GB and when inflated the total content is ~5GB, and each model has about 500MB.
DOI: 10.5281/zenodo.7976199
title: Stellar properties of observed stars stripped in binaries in the Magellanic Clouds - Spectral Models

description: This Zenodo repository is one of three Zenodo repositories related to the article "Stellar properties of observed stars stripped in binaries in the Magellanic Clouds" by Y. Götberg, M.R. Drout, A.P. Ji, J.H. Groh, B.A. Ludwig, P.A. Crowther, N. Smith, A. de Koter, and S.E. de Mink. In the article, we analyze the optical spectra of ten stars and measure their stellar properties using spectral fitting. This repository contains the full spectral model grid computed using the 1D non-LTE radiative transfer code CMFGEN (see Hillier & Miller 1998 and http://kookaburra.phyast.pitt.edu/hillier/web/CMFGEN.htm). The grid spans three parameters: temperature, surface gravity, and surface hydrogen mass fraction (which also sets the surface helium mass fraction; Y = 1 - X - Z). See Section 4.1 for more details. Below, we describe the content presented here in more detail: <strong>0_ReadMe.txt</strong>: A text file where we describe some more details regarding the content. <strong>S41_spectral_model_grid_parameters.txt (95 KB):</strong> A table containing relevant parameter information for each model in the spectral model grid presented in Section 4.1. <strong>S41_spectra_spectral_model_grid.tar.gz (479MB)</strong>: A .tar.gz containing the spectral energy distributions and normalized spectra in a text file for each model. The full CMFGEN models are provided as well (see below). This .tar.gz becomes 3.2 GB when inflated. Complete CMFGEN models for the full spectral model grid. Because of the size of these models, we group them into tarballs with one surface hydrogen mass fraction and one effective temperature, labeled for example <strong>XHs0.01_T40000.tar.gz</strong> (that is, this tarball contains a set of models with different surface gravity). Each of these have a size of ~1-3GB and when inflated the total content is ~5GB, and each model has about 500MB.
DOI: 10.6084/m9.figshare.23650680
title: <em>Ganoderma</em> (XZL) genome annotation files

description: Annotated file of five<em> Ganoderma lucidum </em>（XZL） genomes
DOI: 10.6084/m9.figshare.23650680.v1
title: <em>Ganoderma</em> (XZL) genome annotation files

description: Annotated file of five<em> Ganoderma lucidum </em>（XZL） genomes
DOI: 10.5281/zenodo.8127791
title: callophyllis_flabellulata_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127790
title: callophyllis_flabellulata_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127793
title: chlamys_rubida_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127792
title: chlamys_rubida_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127795
title: chlorellidium_tetrabotrys_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127794
title: chlorellidium_tetrabotrys_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127805
title: cumathamnion_decipiens_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127804
title: cumathamnion_decipiens_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127777
title: Whole-Genome Detection using Multivalent DNA-Coated Colloids

description: Data of confocal images and DNA sequence of a E.coli bl21-de3 genome presented in a PNAS publication.
DOI: 10.5281/zenodo.8127776
title: Whole-Genome Detection using Multivalent DNA-Coated Colloids

description: Data of confocal images and DNA sequence of a E.coli bl21-de3 genome presented in a PNAS publication.
DOI: 10.34740/kaggle/dsv/6104610
title: COVID Vaccination in World (updated daily)
DOI: 10.14458/siam.res.2023.1
title: 3Rs Behaviour in Plastic Usage among International University Students in Thailand
DOI: 10.5281/zenodo.8127850
title: Data for "Mental health problems of entrepreneurs during the COVID-19 health crisis: Fear, anxiety, and stress"

description: Data for "Mental health problems of entrepreneurs during the COVID-19 health crisis: Fear, anxiety, and stress"
DOI: 10.5281/zenodo.8127849
title: Data for "Mental health problems of entrepreneurs during the COVID-19 health crisis: Fear, anxiety, and stress"

description: Data for "Mental health problems of entrepreneurs during the COVID-19 health crisis: Fear, anxiety, and stress"
DOI: 10.5281/zenodo.5793126
title: Data to support the publication "Soil Water Retention as Affected by Management Induced Changes of Soil Organic Carbon: Analysis of Long-Term Experiments in Europe", https://doi.org/10.3390/land10121362

description: Soil organic carbon content and water content at the different pressure points, as measured by Ioanna Panagea for the publication "Soil Water Retention as Affected by Management Induced Changes of Soil Organic Carbon: Analysis of Long-Term Experiments in Europe", https://doi.org/10.3390/land10121362 from the the long term experiments belonging in some of the SoilCare project partners.
description: {"references": ["https://doi.org/10.3390/land10121362"]}
DOI: 10.5281/zenodo.5793125
title: Data to support the publication "Soil Water Retention as Affected by Management Induced Changes of Soil Organic Carbon: Analysis of Long-Term Experiments in Europe", https://doi.org/10.3390/land10121362

description: Soil organic carbon content and water content at the different pressure points, as measured by Ioanna Panagea for the publication "Soil Water Retention as Affected by Management Induced Changes of Soil Organic Carbon: Analysis of Long-Term Experiments in Europe", https://doi.org/10.3390/land10121362 from the the long term experiments belonging in some of the SoilCare project partners.
description: {"references": ["https://doi.org/10.3390/land10121362"]}
DOI: 10.5281/zenodo.8127893
title: enteromius_anoplus_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127892
title: enteromius_anoplus_decontaminated_gx.fasta.gz

description: .
DOI: 10.34740/kaggle/dsv/6104837
title: Bengali Empathetic Conversations Corpus
DOI: 10.5281/zenodo.8127895
title: enteromius_fasciolatus_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127894
title: enteromius_fasciolatus_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127899
title: enteromius_mattozi_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127898
title: enteromius_mattozi_decontaminated_gx.fasta.gz

description: .
DOI: 10.6084/m9.figshare.23650746
title: Iron death and benign prostatic hyperplasia

description: Iron death and benign prostatic hyperplasia
DOI: 10.6084/m9.figshare.23650746.v1
title: Iron death and benign prostatic hyperplasia

description: Iron death and benign prostatic hyperplasia
DOI: 10.5281/zenodo.8127907
title: enteromius_paludinosus_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127906
title: enteromius_paludinosus_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127930
title: enteromius_trimaculatus_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127929
title: enteromius_trimaculatus_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127936
title: enteromius_unitaeniatus_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127935
title: enteromius_unitaeniatus_decontaminated_gx.fasta.gz

description: .
DOI: 10.14458/siam.res.2023.2
title: A Study Examining Behavioral Factors Impacting Students Intention to Wear a Helmet Whilst Using a Motorcycle in Bangkok, Thailand
DOI: 10.14458/siam.res.2023.3
title: CROSS-CULTURAL CONFLICT MANAGEMENT IN THE GLOBAL BUSINESS ENVIRONMENT
DOI: 10.14458/siam.res.2023.4
title: E-loyalty in Online Shopping: the role of e-satisfaction among the Bangladeshi Consumer
DOI: 10.14458/siam.res.2023.5
title: Effect Of Online Learning on Student s Satisfaction
DOI: 10.5281/zenodo.8127940
title: metridium_farcimen_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127939
title: metridium_farcimen_decontaminated_gx.fasta.gz

description: .
DOI: 10.14458/siam.res.2023.6
title: Exploratory Analysis of Factors Influencing Strategic Planning for Agribusinesses in Thailand
DOI: 10.14458/siam.res.2023.7
title: Exporting Fresh Ginger from Thailand - A Startup Business Proposal
DOI: 10.14458/siam.res.2023.8
title: Factors Influencing Customers Readiness and Acceptance of Cashless Society
DOI: 10.14458/siam.res.2023.9
title: Finlandโs Accession to the North Atlantic Treaty Organization
DOI: 10.14458/siam.res.2023.10
title: Gender Capitalism Approach: Reducing Gender-Based Violence and Femicide in Eastern Congo
DOI: 10.14458/siam.res.2023.11
title: Hybrid-Learning Experience of Thai Business Graduate Students at A Private University in Thailand: A Phenomenological Study
DOI: 10.14458/siam.res.2023.12
title: Impact of Social Media Advertising among University Studentsโ Purchase Intentions Through the TikTok Platform
DOI: 10.14458/siam.res.2023.13
title: Online Experience from Shopping Applications and the Impacts on Repeat Usage and Word-of-Mouth Intention
DOI: 10.14458/siam.res.2023.14
title: Social norms and HRM Practice in Thai Subsidiary Corporations: An Exploration into Emic Cultural Influence
DOI: 10.14458/siam.res.2023.15
title: Thailand E-Finance Transformation
DOI: 10.14458/siam.res.2023.16
title: The Impacts of Russia-Ukraine War on the World Economy and Sustainable Development
DOI: 10.14458/siam.res.2023.17
title: Youth Development Program Reimagine Higher Education from Student Perspective
DOI: 10.5281/zenodo.8127944
title: microctenopoma_lineatum_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127943
title: microctenopoma_lineatum_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127948
title: microctenopoma_steveboyesi_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127947
title: microctenopoma_steveboyesi_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127950
title: nanomia_bijuga_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127949
title: nanomia_bijuga_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127967
title: ophiopholis_aculeata_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127966
title: ophiopholis_aculeata_decontaminated_gx.fasta.gz

description: .
DOI: 10.34740/kaggle/dsv/6105109
title: Mahanagar Yatayat Dataset
DOI: 10.5281/zenodo.8127991
title: phyllaplysia_taylori_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127990
title: phyllaplysia_taylori_decontaminated_gx.fasta.gz

description: .
DOI: 10.6084/m9.figshare.23650776
title: 1_IgG.bw

description: IgG CUT&RUN bigwig file. Uploaded by John Vusich 07/09/2023
DOI: 10.6084/m9.figshare.23650776.v1
title: 1_IgG.bw

description: IgG CUT&RUN bigwig file. Uploaded by John Vusich 07/09/2023
DOI: 10.6084/m9.figshare.23650773
title: 7_e2f5.bw

description: e2f5 CUT&RUN bigwig file. Uploaded by John Vusich 07/09/2023
DOI: 10.6084/m9.figshare.23650773.v1
title: 7_e2f5.bw

description: e2f5 CUT&RUN bigwig file. Uploaded by John Vusich 07/09/2023
DOI: 10.5281/zenodo.8127997
title: microctenopoma_stevenorrisi_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8127996
title: microctenopoma_stevenorrisi_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8128008
title: enteromius_trimaculatus_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8128007
title: enteromius_trimaculatus_decontaminated_gx.fasta.gz

description: .
DOI: 10.6084/m9.figshare.23650788
title: e2f5.relaxed.bed

description: E2F5 CUT&RUN relaxed bed file output from SEACR. Uploaded by John Vusich 07/09/2023.
DOI: 10.6084/m9.figshare.23650788.v1
title: e2f5.relaxed.bed

description: E2F5 CUT&RUN relaxed bed file output from SEACR. Uploaded by John Vusich 07/09/2023.
DOI: 10.5281/zenodo.8128027
title: pterygophora_californica_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8128026
title: pterygophora_californica_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8128030
title: pleurophycus_gardneri_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8128029
title: pleurophycus_gardneri_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8128032
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Edred John Henry Corner, http://www.wikidata.org/entity/Q4233315. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q4233315
DOI: 10.5281/zenodo.8128035
title: pseudocrenilabrus_philander_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8128034
title: pseudocrenilabrus_philander_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8128037
title: rhodymenia_pacifica_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8128036
title: rhodymenia_pacifica_decontaminated_gx.fasta.gz

description: .
DOI: 10.6084/m9.figshare.23650791.v1
title: Portable Terahertz probe for <em>in-vivo</em> skin hydration evaluation as a novel tool for clinical diagnosis

description: Raw THz data and surveys presented in the paper: <strong>Portable Terahertz probe for </strong><em><strong>in-vivo</strong></em><strong> skin hydration evaluation as a novel tool for clinical diagnosis</strong>
DOI: 10.6084/m9.figshare.23650791
title: Portable Terahertz probe for <em>in-vivo</em> skin hydration evaluation as a novel tool for clinical diagnosis

description: Raw THz data and surveys presented in the paper: <strong>Portable Terahertz probe for </strong><em><strong>in-vivo</strong></em><strong> skin hydration evaluation as a novel tool for clinical diagnosis</strong>
DOI: 10.6084/m9.figshare.23650797
title: SWSI: An Experience Report on Using Wireframes in a Capstone Software Engineering Class

description: A replication package for IEEE Software SWSI: Software Engineering Educating and Training. An Experience Report on Using Wireframes in a Capstone Software Engineering Class" Paper title: An Experience Report on Using Wireframes in a Capstone Software Engineering Class
DOI: 10.5281/zenodo.8128051
title: tiaropsis_multicirrata_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8128050
title: tiaropsis_multicirrata_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8128062
title: ulva_armoricana_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8128061
title: ulva_armoricana_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8128064
title: ulvella_scutata_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8128063
title: ulvella_scutata_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8128072
title: tonicella_lineata_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8128071
title: tonicella_lineata_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8128076
title: urticina_crassicornis_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8128075
title: urticina_crassicornis_decontaminated_gx.fasta.gz

description: .
DOI: 10.5519/qd.y9wqt05d
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5281/zenodo.8128120
title: Data and code: Oceanic frontal divergence alters phytoplankton competition and distribution

description: Data and codes for the publication "Oceanic frontal divergence alters phytoplankton competition and distribution''
DOI: 10.5281/zenodo.8128119
title: Data and code: Oceanic frontal divergence alters phytoplankton competition and distribution

description: Data and codes for the publication "Oceanic frontal divergence alters phytoplankton competition and distribution''
DOI: 10.5281/zenodo.7885789
title: The quantification of Open Scholarship - A mapping review

description: We present the data set for the mapping review "The quantification of open scholarship"
DOI: 10.5281/zenodo.7885790
title: The quantification of Open Scholarship - A mapping review

description: We present the data set for the mapping review "The quantification of open scholarship"
DOI: 10.5281/zenodo.8128130
title: The quantification of Open Scholarship - A mapping review

description: We present the data set for the mapping review "The quantification of open scholarship"
DOI: 10.5519/qd.8ckf4qsi
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (4 records)
DOI: 10.21227/m7gj-ks21
title: BERT fine-tuned CORD-19 NER Dataset

description: This Named Entities dataset is implemented by employing the widely used Large Language Model (LLM), BERT, on the CORD-19 biomedical literature corpus. By fine-tuning the pre-trained BERT on the CORD-NER dataset, the model gains the ability to comprehend the context and semantics of biomedical named entities. The refined model is then utilized on the CORD-19 to extract more contextually relevant and updated named entities. However, fine-tuning large datasets with LLMs poses a challenge. To counter this, two distinct sampling methodologies are utilized. First, for the NER task on the CORD-19, a Latent Dirichlet Allocation (LDA) topic modeling technique is employed. This maintains the sentence structure while concentrating on related content. Second, a straightforward greedy method is deployed to gather the most informative data of 25 entity types from the CORD-NER dataset.
DOI: 10.6084/m9.figshare.23631495
title: Isolate contigs

description: Contigs corresponding to Campylobacter genomes used in the study. All genomes are also found on pubMLST (https://pubmlst.org/)