cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28279850.v2
title: Supplementary materials for "MapColorAI: Designing Contextually Relevant Choropleth Map Color Schemes Using a Large Language Model"

description: These are the supplementary materials for the article "MapColorAI: Designing Contextually Relevant Choropleth Map Color Schemes Using a Large Language Model".<b>GeoJSON data samples</b>: Administrative Divisions of the People's Republic of China.json<b>mapping data examples</b> (The specific values in the following data are randomly generated and solely intended for system testing.):mapping data example1 Forest Coverage Rate by Province in China.jsonmapping data example2 Internet penetration rate by province.jsonmapping data example3 National Intangible Cultural Heritage Items.jsonmapping data example4 Seventh National Population Census in China .json<b>demonstration video</b>: Demonstration video.mp4<b>system usage documentation</b>: System usage documentation.html<br>
DOI: 10.6084/m9.figshare.3413683.v1
title: Multiple image alignment of neuronal staining using anti-NeuN-DAB staining of sham mice and 28 days after 30 min MCAo and delayed treatment with 5 µg TAT.ARC or control protein.

description: Multiple image alignment of neuronal stainings using anti-NeuN-DAB of sham mice and 28 days after 30 min MCAo. Mouse brains were cut in coronal sections using a mouse brain atlas (Franklin and Paxinos, 2007) to analyze direct and indirect infarct volumes, striatal area in a3 (area 3) and neuronal densities within the striatum in a3: a1: Bregma = 2.80; a2: Bregma = 1.54; a3: Bregma = 0.14; a4: Bregma = -1.94; a5: Bregma = -3.88. Image collection of NeuN-DAB-stained brain slices from mice 28 days post MCAo were collected as transmission images using a Leica DMI8 microscope equipped with LED light source, a Fluotar 10x/030 dry objective and a DFC300G camera and stitched within the Leica LAS X2.0 software. The code of mice ID can be found in the excel spread sheet attached. a1-a5 and mouse ID is used in the file name.
DOI: 10.17632/mxc6vb7svm
title: COVID19, Pneumonia and Normal Chest X-ray PA Dataset

description: The dataset is organized into 3 folders (covid, pneumonia , normal) which contain chest X-ray posteroanterior (PA) images. X-ray samples of COVID-19 were retrieved from different sources for the unavailability of a large specific dataset. Firstly, a total 1401 samples of COVID-19 were collected using GitHub repository [1] , [2] , the Radiopaedia [3] , Italian Society of Radiology (SIRM) [4] , Figshare data repository websites [5] , [6] . Then, 912 augmented images were also collected from Mendeley instead of using data augmentation techniques explicitly [7] . Finally, 2313 samples of normal and pneumonia cases were obtained from Kaggle [8] , [9] . A total of 6939 samples were used in the experiment, where 2313 samples were used for each case. References: [1]https://github.com/agchung [2]https://arxiv.org/abs/2003.11597 [3]https://radiopaedia.org/?lang=gb [4]https://www.sirm.org/en/category/articles/covid-19-database/ [5]https://figshare.com/articles/dataset/COVID-19ChestX-RayImageRepository/12580328/2 [6]https://figshare.com/articles/COVID-19ImageRepository/12275009/1 [7]https://data.mendeley.com/datasets/2fxz4px6d8/4 [8]https://www.kaggle.com/paultimothymooney/chest-xray-pneumonia [9]https://www.kaggle.com/nih-chest-xrays/data
DOI: 10.17632/svbzzxkynn
title: Math and literacy anxiety, students’ achievement, and expectancy effects

description: The data gathered in the study (2020-2021) concerning the direct and indirect effects of parents' and teachers' expectancies on students' math and literacy achievement. Indirect paths involved (1) students' math and literacy anxiety, (2) students' self-expectancies, and (2) students' marks in math and literacy.
DOI: 10.6084/m9.figshare.14101613.v1
title: Supplementary Material for: Physical Activity in Patients with Inflammatory Bowel Disease: A Cross-Sectional Study

description: <b><i>Introduction and Objective:</i></b> Despite the known benefits of physical activity in the management of chronic diseases, the use of exercise as a treatment is relatively underemployed, with many patients reporting their disease to be a barrier. This study aimed to assess physical activity levels, attitudes, and barriers towards exercise in a cohort of patients with inflammatory bowel disease (IBD). In addition, this study aimed to assess possible relationships between physical well-being, psychological well-being, and sociodemographic factors. <b><i>Methods:</i></b> 306 patients &gt;18 years with diagnosed IBD in Dunedin, New Zealand, were approached to participate in this study. Participants who consented completed questionnaires regarding exercise preferences and attitudes, physical activity levels, and psychological well-being. <b><i>Results:</i></b> Seventy-seven patients participated in the study (77/308 = 25%). Sixty-six percent of participants met physical activity guidelines and the median metabolic equivalent minutes/week of 1,027.5 (505.5–2,339.5). Walking was the most preferred activity (30%) followed by water-based exercise (20%). Two-thirds of participants reported their disease limited the amount of physical activity undertaken. Common barriers to participating in physical activity included fatigue (34%) and abdominal pain (20%). Patients with active disease reported higher levels of barriers than those in remission (80 vs. 54%, <i>p</i> = 0.018). Higher physical activity levels were correlated with lower levels of fatigue (<i>p</i> = 0.022–0.046). <b><i>Conclusions:</i></b> While patients with IBD in Dunedin, New Zealand, are physically active, reducing real and perceived barriers is crucial to further increase physical activity in patients with IBD who are in remission or with active disease.
DOI: 10.6084/m9.figshare.26397538.v2
title: Periodic cooking: the perfect egg

description: Egg cooks are challenged by the two-phase structure: albumen and yolk require two cooking temperatures. Separation or a compromise temperature to the detriment of food safety or taste preference are the options. We have discovered that it is possible to cook albumen and yolk at two temperatures without separation by using periodic boundary conditions in the energy transport problem. Sometimes science can surpass the art of master chefs.
DOI: 10.6084/m9.figshare.28511108.v1
title: Influence of parenting styles on college students' views on marriage and love in the context of a pluralistic society: the mediating role of para-social relationships

description: Focusing on the measurement of prosocial relationships while linking to family upbringing styles and college students' views on marriage, this study explored the mechanisms of influence between the three variables.
DOI: 10.17632/w6p652wrb9
title: Supplemental material

description: Supplementary tables and figures from 'Effects of oral roflumilast therapy on body weight and cardiometabolic parameters in patients with psoriasis – results from a randomized controlled trial (PSORRO)'
DOI: 10.6084/m9.figshare.27993743.v2
title: Example-Based Concept Analysis Framework for Deep Weather Forecast Models

description: This is the code for the paper of "Example-Based Concept Analysis Framework for Deep Weather Forecast Models".The data consist of docker image with pytorch and linux environment.Please refer the Installation manual.txt
DOI: 10.6084/m9.figshare.5122591.v1
title: Supplementary Material for: A Simultaneous Iris Angiography Technique in Pigmented Rabbits

description: <i>Purpose:</i> To report a simultaneous iris angiography (IA) technique combined with the use of indocyanine green (ICG) and fluorescein sodium (FS) in pigmented rabbits. <i>Methods:</i> 15 rabbits were randomly divided into 3 groups according to the dye doses: the dose of the lower-volume group was 2 mg FS and 2 mg ICG; the dose of the moderate-volume group was 5 mg FS and 5 mg ICG, and the dose of the higher-volume group was 8 mg FS and 8 mg ICG. Fifteen IAs were performed by a confocal scanning laser ophthalmoscope and a rapid localization technique giving a flat-on image. <i>Results:</i> Simultaneous digital angiography provided two kinds of a fully dynamic video of iris vessels fluorescein in all pigmented rabbits, which is the same in pigmented and albino rabbits and no vascular pattern was hidden by the iris stromal pigment. Furthermore, dye doses influenced the IA effect in rabbits. The lower-volume dye can demonstrate iris vessels, without obvious leakage, which, however, extinguish rapidly after 10–15 s. In the higher-volume group, vascular imaging lasted longer, but subsequently significant FS and ICG leakage appeared as streams on the surface of the iris until the dye disappeared from the iris vessels; the diffuse and intense aqueous fluid lasted 1 day. The moderate-volume dye displayed vessels clearly by ICG for 300 s, without leakage; FS clear vessels were maintained for about 15–20 s and the structure of the iris became fuzzy due to quick leakage. <i>Conclusions:</i> Simultaneous IA with a rapid localization technique allows high-quality imaging of the pigmented rabbits and the moderate dosage of 5 mg FS and 5 mg ICG is preferred for best visualization.
DOI: 10.17632/bybj3gm6mb
title: Factors Influencing College Students’ Intention to Communicate with AI Language Partners in English Speaking Learning

description: Factors Influencing College Students’ Intention to Communicate with AI Language Partners in English Speaking Learning
DOI: 10.6084/m9.figshare.29087987.v1
title: Alignments and trees associated with Fig. 4 and S4: Primate phylogenetic analyses of SAMD9 and SAMD9L. Codon alignments used as inputs.

description: Alignments for phylogenetic analyses of Fig. 4 and S4.
DOI: 10.6084/m9.figshare.3427766.v1
title: ANA_mancini14_data.zip

description: Whole-body mapping of spatial acuity for pain and touch. We evaluated the 2-point discrimination thresholds for both nociceptive-selective and tactile stimuli across several skin regions. Thresholds were estimated using pairs of simultaneous stimuli, and also using successive stimuli.<br>
DOI: 10.17632/4bk8tgngrh
title: Data for: Robust Kernels for Kernel Density Estimation

description: Income data for the United States from the 2014 March Supplement of the Current Population Survey
DOI: 10.6084/m9.figshare.21675092.v1
title: Environmental Justice Implications of Accelerated Electric Vehicle Penetration

description: Modeled NO2 and PM2.5 concentrations at Census block centroids in a portion of Southern California. The reference case assumed that the number of electric vehicles were at a default level. The sensitivity cases assumed that certain policies were in place to accelerate the pepentration of electric vehicles into the fleet. Each census block group is labeled with the race ethnicity group predominantly makes up the respected group.
DOI: 10.6084/m9.figshare.28514069.v2
title: Bioinformatic discovery of type 11 secretion system (T11SS) cargo across the Proteobacteria Supplemental Data

description: Type 11 secretion systems (T11SS) are broadly distributed among proteobacteria, with more than 3000 T11SS family outer membrane proteins (OMPs) comprising 10 major sequence similarity network (SSN) clusters. Of these, only 7, all from animal-associated cluster 1, have been experimentally verified as secretins of cargo, including adhesins, hemophores, and metal binding proteins. To identify novel cargo of a more diverse set of T11SS, we identified gene families co-occurring in gene neighborhoods with either cluster 1 or marine microbe-associated cluster 3 T11SS OMP genes. We developed bioinformatic controls to ensure perceived co-occurrences are specific to T11SS, and not general to OMPs. We found that both cluster 1 and cluster 3 T11SS OMPs frequently co-occur with single carbon metabolism and nucleotide synthesis pathways, but that only cluster 1 T11SS OMPs had significant co-occurrence with metal and heme pathways, as well as with mobile genetic islands, potentially indicating diversified function of this cluster. Cluster 1 T11SS co-occurrences included 2556 predicted cargo proteins, unified by the presence of a C-terminal β-barrel domain, which fall into 141 predicted UniRef50 clusters and approximately 10 different architectures: 4 similar to known cargo and 6 uncharacterized types. We experimentally demonstrate T11SS-dependent secretion of an uncharacterized cargo type with homology to Plasmin sensitive protein (Pls). Unexpectedly, genes encoding marine cluster 3 T11SS OMPs only rarely co-occurred with the C-terminal β-barrel domain and instead frequently co-occurred with DUF1194-containing genes. Overall, our results show that with sufficiently large-scale and controlled genomic data, T11SS-dependent cargo proteins can be accurately predicted.
DOI: 10.6084/m9.figshare.3554160.v1
title: Supplement 1. R scripts for calculating eviction measures and applying them to example data.

description: File List Williamsetal_EvictMS_Rsupp_Functions_May2012.txt Williamsetal_EvictMS_Rsupp_Examples_May2012.txt Description The supplementary material consists of two R scripts. Williamsetal_EvictMS_Rsupp_Functions_May2012.txt contains the functions for calculating the eviction measures and <i>d</i>λ as described in the text and the alternative measures of <i>d</i>λ described in the Appendix. Williamsetal_EvictMS_Rsupp_Examples_May2012.txt contains example data for <i>Anemone patens</i>, applies the eviction measures to those data, demonstrates how to solve eviction by implementing and floor and ceiling, and recreates Fig. 2E. (The <i>Anemone patens</i> data were previously published in Williams and Crone 2006 (<i>Ecology</i>).) Additional R libraries that are required are noted within the scripts. R can be downloaded for free from a CRAN site near you (CRAN=Comprehensive R Archive Network).
DOI: 10.6084/m9.figshare.4036584.v2
title: Megalosauripus transjuranicus and other large tridactyl tracks from the Ajoie district (NW Switzerland). 3D meshes

description: 3D models of the large tridactyl tracks including the type specimens of <i>Megalosauripus transjurani.</i> All the collected and/or casted specimens, are stored and accessible at the PALA16 collections (Office de la Culture, 2900, Porrentruy, Switzerland) and will be transferred to the JURASSICA Muséum (Route de Fontenais 21, 2900, Porrentruy, Switzerland) at the end of 2018.Files are labelled accordingly the track IDs. All photogrammetric models were generated with a Canon EOS 70D thought Agisoft Photoscan Pro (v. 1.2.5 and 1.2.6); number of photos used, accuracy and resolution of each models are in the associated pdf. "laser" in the file name indicates tracks that were laser-scanned in 2011 with a FARO Platinum Scanarm 3.0 m. Processing information in the associated pdf. <b>Citation for this article</b>: Razzolini N.L., Belvedere M., Marty D., Paratte G., Lovis C., Cattin M., and Meyer C.A. 2017. <i>Megalosauripus transjuranicus</i> ichnosp. nov. A new Late Jurassic theropod ichnotaxon from NW Switzerland and implications for tridactyl dinosaur ichnology and ichnotaxomy. PLoS ONE 12(7): e0180289. Doi: 10.1371/journal.pone.0180289
DOI: 10.17632/452w8mdr6n
title: Data for: Dams, dam costs and damnable cost overruns

description: This database contains 124 primary variables for 224 large dams and reservoirs in Australia with a reservoir of capacity ≥ 10 GL. The variables include: i) dam and reservoir related features collated from the ANCOLD database; ii) reservoir yield and dam cost data provided to the authors by numerous public and private organisations; and iii) at-site and catchment calculations undertaken as part of this study of climate, hydrology, location and terrain related variables. Variables are described in the Supplementary Material of the paper "Dams, dam costs and damnable cost overruns".
DOI: 10.6084/m9.figshare.15042645.v1
title: Delmont et al. (2020) Annotation Results

description: Annotation of 682 MAGS from Delmont et al. (2020) for the preprint "The high-throughput gene prediction of more than 1,700 eukaryote genomes using the software package EukMetaSanity" by Neely, Hu, Alexander, and Tully, 2021<br><br>Extract files with the command:<br>cat eukmetasanity.20210722.Delmont.parta* | tar -xzvf -
DOI: 10.6084/m9.figshare.26521072.v1
title: Processed CT tiff files for ROMVP88291

description: Zip file containing both the reconstruction txt file (containing the appropriate voxel size information) and CT scan slices (16-bit tiff format) for the holotype of <i>Acheloma cryptatheria </i>(ROMVP 88291)
DOI: 10.6084/m9.figshare.5242075.v1
title: Erratum: High Body Mass Index Worsens Survival in Patients with Esophageal Squamous Cell Carcinoma after Esophagectomy

description: <b><i>Aims:</i></b> To investigate the prognostic significance of body mass index (BMI) on the survival of patients with esophageal squamous cell carcinoma (ESCC) after esophagectomy. <b><i>Methods:</i></b> Between 2005 and 2008, 291 patients with ESCC who met the inclusion criteria were included in the study. The BMI cut-off values were as follows: 18.5-23 kg/m<sup>2</sup> for normal weight; 23-27.5 kg/m<sup>2</sup> for overweight; and ≥27.5 kg/m<sup>2</sup> for those with obesity. Univariate and multivariate analyses were performed to identify prognostic factors for long-term survival. <b><i>Results:</i></b> Patients were divided into 3 groups: normal weight (<i>n</i> = 138), overweight (<i>n</i> = 103), and obese (<i>n</i> = 50). The median survival time was 56 months. The 5-year overall survival (OS) rates were 40.8, 44.7, and 20.8% for normal weight, overweight, and obese patients respectively (<i>p</i> &lt; 0.05). Multivariate analysis identified BMI as an independent prognostic factor for OS (<i>p</i> &lt; 0.05). For 179 patients without lymph node metastasis, the 5-year OS rates were 46.5, 50.7, and 27.0% for normal weight, overweight, and obese patients respectively (<i>p</i> &lt; 0.05). <b><i>Conclusions:</i></b> A BMI ≥27.5 kg/m<sup>2</sup> has a distinctly adverse impact on the long-term survival of ESCC patients after esophagectomy. High BMI is a potential predictor of worse prognosis in ESCC patients, particularly in patients without lymph node metastasis.
DOI: 10.6084/m9.figshare.8158817.v2
title: Advancing land-sea integration for ecologically meaningful coastal conservation and management: Dataset

description: Dataset from "Advancing land-sea integration for ecologically meaningful coastal conservation and management". <br>This dataset is an ESRI shapefile of South Africa's ecologically determined coastal zone. It is available on South Africa's National Integrated Coastal Map Project page: http://bgis.sanbi.org/Projects/Detail/213 (click on the 2018 Coastal Map tab on the left for shapefiles). Any further iterations and refinements of this map will also be available from this Coastal Map Project page; this way, readers will always have access to the latest version of the map of coastal ecosystem types for South Africa.<br>The map was developed by fine-scale mapping of a seashore zip (comprising a backshore and shore zone) that seamlessly joins the existing terrestrial National Vegetation Map (see: http://bgis.sanbi.org/Projects/Detail/60), National Estuaries Map (http://bgis.sanbi.org/SpatialDataset/Detail/2683), and National Marine Map (http://bgis.sanbi.org/SpatialDataset/Detail/2681).
DOI: 10.6084/m9.figshare.11996724.v1
title: Raw Training Data (NCP 2020).xlsx

description: Citation: <br>1. Qiang Li, In Ho Cho, Rana Biswas, and Jaeyoun Kim, 2019. Nanoscale Modulation of Friction and Contact<br>Electrification via Surface Nanotexturing, Nano Letters 19, 850-856. [10.1021/acs.nanolett.8b04038].2. In Ho Cho, Qiang Li, Rana Biswas, and Jaeyoun Kim, 2020. Nature Communications Physics (under review).<br>
DOI: 10.6084/m9.figshare.14518383.v1
title: four_dataset.csv

description: The dataset contains <b>Failure Time of 84 Windshield, </b><b>Service Times of 63 Aircraft Windshield, </b><b>Breaking Stress of Carbon Fibers and </b><b>Fatigue Life of 6061 - T6 Aluminum Coupons used for the article titled</b><b>"A New Modified Lehmann Type – II G Class of Distributions: Exponential Distribution with Theory, Simulation, and Applications to Engineering Sector"</b><b> </b>
DOI: 10.6084/m9.figshare.5242081.v1
title: Erratum: A Retrospective Analysis of Stereoelectroencephalography and Subdural Electroencephalography for Preoperative Evaluation of Intractable Epilepsy

description: <b><i>Background:</i></b> Different methods for intracranial electrode recording have various advantages and disadvantages, and controversy exists regarding the complications of stereoelectroencephalography (SEEG) and subdural EEG. <b><i>Objective:</i></b> The purpose of this study was to determine the efficacy and safety of SEEG by comparing it with subdural EEG. <b><i>Methods:</i></b> Data from 100 patients who underwent SEEG (<i>n</i> = 48) and subdural EEG (<i>n</i> = 52) to evaluate the epileptogenic zone were collected from June 2011 to June 2015. The evaluation results, surgical outcomes, and complications were compared. <b><i>Results:</i></b> No significant differences were noted between the SEEG and subdural EEG groups in identifying the epileptogenic zone or undergoing epileptic surgery. Of the 88 patients who underwent epilepsy surgery after assessment, 59.5% in the SEEG group and 52.2% in the subdural EEG group became seizure free. No significant differences in postoperative seizure control or intelligence improvement were noted. The overall complication rate in SEEG patients (8/48; 16.7%) was lower than that in subdural EEG patients (13/52; 25%), particularly for hemorrhage and infection (4.2 vs. 17.3%, <i>p</i> &lt; 0.05). <b><i>Conclusions:</i></b> This retrospective review indicates that SEEG has low associated complications, particularly regarding hemorrhage and infection. SEEG is a safe and effective method for intracranial monitoring.
DOI: 10.6084/m9.figshare.7477751.v1
title: Data from Ocean acidification and warming affect skeletal mineralization in a marine fish

description: Data set used for analyses
DOI: 10.6084/m9.figshare.11917890.v1
title: Dataset for publication titled "Nonlinear rheological characteristics of single species bacterial biofilms"

description: The contents of the zip files are described as follows:1) Fig1_confocal.zip - Contains images used for figure 1 in manuscript.2) Figure 2_raw data.zip - Contains rheometer data for generating figure 2 in manuscript.3) Figure 3_4_5 raw data.zip - Contains raw rheometer waveforms for generating figures 3, 4, 5 in the manuscript.4) Figure 6 raw data.zip - Contains raw rheometer waveforms for generating figure 6 in the manuscript.
DOI: 10.6084/m9.figshare.23896791.v3
title: <b>Alignments and documents of positive selection</b>

description: Alignments: <i>Carnivora.</i> IZUMO1 JUNO ZP1 ZP2 ZP3 ZP4. .fas spermIZUMO1positive selection analysis: IZUMO1.zip oocite gamete interaction proteins ZPs and JUNO positive selection analysis: ZPs.zip<br>
DOI: 10.6084/m9.figshare.895015.v2
title: DICOM files with all CT scan slices - Titanosaur project

description: CT scan data for titanosaurian sauropod braincase from the Upper Cretaceous (Turonian) Bissekty Formation of Uzbekistan (Sues, Averianov, Ridgely & Witmer)
DOI: 10.17632/w3zfy3cy2m
title: Data for: Examination of downward hydrocarbon charge within the Bakken-Three Forks Petroleum System - Williston Basin, North America

description: "Compiled_Core-Plug_Data" is a compilation of core plug data retrieved from the North Dakota Industrial Commission, Department of Mineral Resources, Oil and Gas Division. Such data was generated by the original operating company that extracted the core sample, and then submitted to the state of North Dakota.