cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26078788.v1
title: <b>World Terrestrial Ecosystems 2015 to 2050 Comparison Project Data</b>

description: This ZIP archive contains rasters (global extent, 1km resolution, Cloud Optimized GeoTiff format) for a new version of 2015 World Terrestrial Ecosystems (WTEs), SSP-based projections of future WTEs for 2050, and raster datasets that present the types of change. Additionally, we include the new input datasets for this WTE model, which allow the comparisons of land cover and climate regions to be made. The inventory of layers in this group is as follows:Version 2 of 2015 WTEs comparable to three SSP ensemble WTE .tifs for 2050 for SSP126, 370, and 585.Four land cover input .tifs derived from Chen et al. (2022) that correspond to each of the above WTE layersFour climate region .tifs derived from CHELSA climatologies that correspond to each of the above WTE layersThree Change Type .tifs that show locations by type of change (temperature, aridity, or land cover) from 2015 to 2050.One .tif with the combinations of changes that enable a custom graphic in online maps to describe the types of change in each location.15 .tifs, one for each combination of GCM and SSP, based on the CHELSA and Chen et al. sources.<br>
DOI: 10.6084/m9.figshare.748832.v1
title: teacher use of latest trend

description: education
DOI: 10.6084/m9.figshare.28219280.v1
title: One year reflection to consolidate progress in aquatic conservation research

description: Search results from a Web of Science database search, for all manuscript types with the filters Year "2024" and Journal "Aquatic Conservation: Marine and Freshwater Ecosystems"
DOI: 10.6084/m9.figshare.20710330.v1
title: Drag coefficient of emergent vegetation in shallow nonuniform flow on a mobile sand bed

description: The dataset and video file describe the experimental data about bed-load transport rates in the nonuniform flow through a vegetated patch under the conditions of Q=1.8 L/s and φ=0.1. This data set is used to support the temporal variation of bed surface . It accompanies the journal article submission entitled "Drag coefficient of emergent vegetation in shallow nonuniform flow on a mobile sand bed"
DOI: 10.6084/m9.figshare.28212008.v4
title: Source data file-Virulence-253035411.xlsx

description: Supplementary Information for the submission(Virulence-253035411) to the Journal “Virulence”
DOI: 10.6084/m9.figshare.12434465.v1
title: Supplementary Material for: Geographic Variations in Cutaneous Melanoma Distribution in the Russian Federation

description: <b><i>Background:</i></b> Cutaneous melanoma (CM) incidence has been increasing around the world. The goal of this study is to describe geographic trends in incidence and mortality of CM in Russia between 2001 and 2017. <b><i>Methods:</i></b> To achieve this we used geo-informatic technique (mapping) and descriptive statistical analysis. Additionally, we studied the associations between ethnicity, geographic latitude/longitude, and CM incidence/mortality rates. We retrospectively analyzed the data from the Moscow Oncology Research Institute, Ministry of Health of the Russian Federation, for the period of the study. Routine methods of descriptive epidemiology were used to study incidence and mortality rates by age groups, years, and jurisdictions (i.e., Federal Districts and Federal Subjects of Russia). <b><i>Results:</i></b> In total, 141,597 patients were diagnosed with melanoma in Russia over the period 2001–2017, of whom 62% were women. The overall age-standardized incidence and mortality rates were 4.27/100,000 and 1.62/100,000, respectively. Geographic mapping revealed north-to-south and east-to-west gradients. As the study was fully descriptive, retrospective, and based on official statistical reports, detailed characteristics of clinical forms, anatomic sites, Breslow depth, and treatments could not be analyzed. <b><i>Conclusions:</i></b> This study outlined the burden of melanoma in the Russian Federation, and the trends were similar to those observed in countries with similar latitudes and skin phenotype. The importance of the skin color gradient and recreational/cultural practices were some of the most important risk factors highlighted in this study for the development of melanoma in Russia.
DOI: 10.6084/m9.figshare.4629994.v1
title: Supplementary information for “Route choice in pedestrians: determinants for initial choices and revising decisions”

description: Here we present supplementary information for the article “Route choice in pedestrians: determinants for initial choices and revising decisions” published in Journal of the Royal Society Interface.
DOI: 10.6084/m9.figshare.5128342.v1
title: Supplementary Material for: Macronutrient Intake and Inadequacies of Community-Dwelling Older Adults, a Systematic Review

description: <b><i>Background:</i></b> Anorexia of ageing may predispose older adults to under-nutrition and protein energy malnutrition. Studies, however, report a large variation in nutrient inadequacies among community-dwelling older adults. <b><i>Summary:</i></b> This systematic review provides a comprehensive overview of the energy and macronutrient intakes and possible inadequacies in community-dwelling older adults. PubMed and EMBASE were screened up to December 2013; data from national nutrition surveys were added. Forty-six studies were included, following the PRISMA guideline. <b><i>Key Messages:</i></b> Mean daily energy intake was 8.9 MJ in men and 7.3 MJ in women. Mean daily carbohydrate and protein intakes were 46 and 15 En% in men and 47 and 16 En% in women, respectively. Mean daily total fat, saturated fatty acid (SFA), mono-unsaturated fatty acid (MUFA) and poly-unsaturated fatty acid intakes were respectively 34, 13, 13 and 5-6 En%. The carbohydrates and MUFA intakes are below the acceptable macronutrient distribution ranges (AMDR). Fat intake is relatively high, and SFA intake exceeds the upper-AMDR. Based on the estimated average requirement (EAR) cut-point method, 10-12% of older adults do not meet the EAR for protein. To interpret a possible energy imbalance additional information is needed on physical activity, energy expenditure and body weight changes. This systematic review indicates a suboptimal dietary macronutrient distribution and a large variation in nutrient intakes among community-dwelling older adults.
DOI: 10.23645/epacomptox.22587706.v1
title: Evaluating the utility of a high throughput thiol-containing fluorescent probe to screen for reactivity: A case study with the Tox21 library (ORD-050365)

description: Dataset for the manuscript "Evaluating the utility of a high throughput thiol-containing fluorescent probe to screen for reactivity: A case study with the Tox21 library"
<br>
Science Inventory, CCTE products: https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25
DOI: 10.6084/m9.figshare.24347617.v1
title: Code underlying the publication: Resilience of manufacturing supply chain network under multiple disruption scenarios

description: This dataset supplements the paper of "Resilience of manufacturing supply chain network under multiple disruption scenarios" with the codes (in the format of .m) to duplicate the reported measurement figures.
DOI: 10.6084/m9.figshare.25927237.v1
title: H13_W

description: Power related data for House 13
DOI: 10.6084/m9.figshare.26316691.v1
title: HitPredict interactions - version 18Jul2023

description: Protein-protein interactions from IntAct, BioGRID, MINT, DIP, MatrixDB, InnateDB are combined, annotated and scored. The reliability score is calculated based on the experimental details of each interaction and the sequence, structure and functional annotations of the interacting proteins.<br>HitPredict update (18Jul2023) contains:<br>1,275,391 experimentally identified physical protein-protein interactions112,090 proteins124 species
DOI: 10.6084/m9.figshare.5241127.v1
title: Erratum: Low to Medium WU-Virus Titers in Young Children with Lower Respiratory Tract Infections

description: The WU-virus (WUV), a novel polyomavirus, has recently been recovered from respiratory tract samples. Within a study collective of children with severe lower respiratory tract disease, 3% of the patients tested WUV positive. Viral loads ranged from 5 × 10<sup>2</sup> copies/ml to 1 × 10<sup>4</sup> copies/ml. The WUV genome-positive patients did not display specific clinical or radiological characteristics to be distinguished from other respiratory tract infections.
DOI: 10.6084/m9.figshare.20092661.v2
title: Exploratory Factor Analysis Output.docxDescriptive statistics, KMO & Bartlett’s test, total variance explained and communalities

description: Extended data for exploratory factor analysis and the questionnaire in English and Amharic versions.Descriptive statistics, KMO & Bartlett's test, total variance explained and communalities(descriptive statistics, KMO & Bartlett's test, total variance explained and communalities).
DOI: 10.6084/m9.figshare.24599037.v1
title: Supplementary Material for: Human monocytes exposed to SARS-CoV-2 display features of innate immune memory producing high levels of CXCL10 upon restimulation

description: Introduction A role for innate immune memory in protection during COVID-19 infection or vaccination has been recently reported. However, no study so far has shown whether SARS-CoV-2 can train innate immune cells. The aim of this study was to investigate whether this virus can induce trained immunity in human monocytes. Methods Monocytes were exposed to inactivated (i)SARS-CoV-2 for 24 hours, followed by a resting period in medium only and a secondary stimulation on day 6 after which, the cytokine/chemokine and transcriptomic profiles were determined. Results Compared to untrained cells, the iSARS-CoV-2-trained monocytes secreted significantly higher levels of IL-6, TNF-α, CXCL10, CXCL9 and CXCL11 upon restimulation. Transcriptome analysis of iSARS-CoV-2 trained monocytes revealed increased expression of several inflammatory genes. As epigenetic and metabolic modifications are hallmarks of trained immunity, we analyzed the expression of genes related to these processes. Findings indicate that indeed SARS-CoV-2-trained monocytes show changes in the expression of genes involved in metabolic pathways including the tricarboxylic acid (TCA) cycle, amino acid metabolism and the expression of several epigenetic regulator genes. Using epigenetic inhibitors that block histone methyl and acetyl transferases, we observed that the capacity of monocytes to be trained by iSARS-CoV-2 was abolished. Conclusion Overall, our findings indicate that iSARS-CoV-2 can induce properties associated with trained immunity in human monocytes. These results contribute to the knowledge required for improving vaccination strategies to prevent infectious diseases.
DOI: 10.6084/m9.figshare.12644852.v1
title: Species-Area Relationship: A Mesocosm Experiment with Annual Plants

description: 1. The increase in species richness with increased island area is one of the most widely documented patterns in ecology and biogeography but its mechanisms are still under debate. Disentangling these mechanisms in natural systems is challenging due to various kinds of confounding effects. 2. Here we use a novel mesocosm experiment focusing on annual plants to disentangle the effects of two mechanisms that may lead to higher richness on large islands: increasing population sizes and increasing opportunities for within-island dispersal. Theoretical studies show that both mechanisms may contribute to higher richness on large islands, but no previous study has attempted to separate their effects. We also test an alternative, 'null' hypothesis, according to which the only mechanism underlying the increase in richness with increased area is a pure sampling effect (the 'passive sampling hypothesis'). 3. As expected, increasing area had a strong positive effect on species richness. However, the main mechanism underlying the difference in richness between small and large islands was passive sampling. Moreover, our results indicate that dispersal had a negative rather than positive effect on island richness. 4. Synthesis: Our results corroborate previous observational studies that failed to reject the passive sampling hypothesis. However, in contrast to previous studies, our findings are based on experimental manipulations of island area, under controlled uniform conditions, at small spatial scales that facilitate within-island dispersal, and in three independent systems that differed in resource availability and disturbance. These findings emphasize the need for a careful examination of sampling effects in future research of the species-area relationship.
DOI: 10.6084/m9.figshare.18335813.v4
title: Supplementary Files and Tables

description: Supplemental tables and files.
DOI: 10.6084/m9.figshare.20444350.v1
title: Additional file 2 of Distinct non-clock-like signatures of the basal cell carcinomas from three sisters with a lethal Gorlin-Goltz syndrome

description: Additional file 2: Somatic loss of heterozygosity (LOH) in whole exome sequencing of matched BCC and ANCT.
DOI: 10.6084/m9.figshare.14176928.v2
title: Molecular identification of bacteria operational taxonomic units (OTUs) investigted..xlsx

description: Molecular identification of bacteria operational taxonomic units (OTUs) investigted.
DOI: 10.6084/m9.figshare.13000103.v5
title: Stable isotope data for perch populations in German gravel pit lakes

description: These data were collected as part of the Baggersee project: https://www.igb-berlin.de/en/project/baggersee <br>Samples for stable isotope analysis were collected from 14 gravel pit lakes in Lower Saxony, Germany. Lakes' samples include fish (perch and cyprinids), zooplankton, benthic macroinvertebrates, and primary producers. <br>Analysis was completed by the Cornell Isotope Laboratory using a Thermo Delta V isotope ratio mass spectrometer interfaced to a NC2500 elemental analyzer. <br>all_isotope_data.csv: d15N and d13C values for all samples collected from 14 gravel pit lakes. TL indicates total length (mm) of perch individuals. <br>lakevar.2.csv: Lake data describing productivity, morphology, littoral structure. <br>weighted l2 by category.csv: Metabolic biomass of fish communties<br>si.analysis.repo.Rmd: Code for analysis investigating effects of productivity and littoral structure on ontogenetic niche shifts of perch communities. <br><br>
DOI: 10.6084/m9.figshare.21918891.v2
title: human_milk_cis_eQTL_summary_stats.tab.gz.tbi

description: Index file for human milk eQTL summary statistics in tabix format
DOI: 10.6084/m9.figshare.13536218.v1
title: Material stocks

description: Material stocks for China and its 31 provinces
DOI: 10.6084/m9.figshare.13220873.v2
title: Raw data of infant's looking time

description: Raw data of infant's looking time<br>Raw data of infant's looking time from the second observer is a dataset to calculate the inter-observer reliability.
DOI: 10.6084/m9.figshare.9632084.v1
title: Open reference dragonfly gut bacteria data file without any pruning (raw format)

description: Open reference dragonfly gut bacteria data file without any pruning (raw format). MiSeq run data analysed in QIIME
DOI: 10.6084/m9.figshare.5128600.v1
title: Supplementary Material for: Association of Self-Reported Frailty with Falls and Fractures among Patients New to Dialysis

description: <b><i>Background:</i></b> Although frailty has been linked to higher risk of falls and fracture in the general population, only few studies have examined the extent to which frailty is associated with these outcomes among patients with end-stage renal disease, who are at particularly high risk for these events. <b><i>Methods:</i></b> A total of 1,646 patients who were beginning maintenance hemodialysis in 297 dialysis units throughout the United States from September 2005 to June 2007 were enrolled in the Comprehensive Dialysis Study, and 1,053 Medicare beneficiaries were included in this study. Self-reported frailty was defined by the patients endorsing 2 or more of the following: poor physical functioning, exhaustion or low physical activity. Falls and fractures requiring medical attention were identified through Medicare claims data. We examined the association between frailty and the time to first fall or fracture using the Fine-Gray modification of Cox proportional hazards regression, adjusted for demographics, Quételet's body mass index, diabetes mellitus, heart failure and atherosclerosis. <b><i>Results:</i></b> Seventy-seven percent of patients were frail by self-report. The median length of follow-up was 2.5 (1.0-3.9) years. Crude rates of first medically urgent falls or fractures were 66 and 126 per 1,000 person-years in non-frail and self-reported frail participants, respectively. After accounting for demographic factors, comorbidities and the competing risk of death, self-reported frailty was associated with a higher risk of falls or fractures requiring medical attention (hazards ratio 1.60, 95% CI 1.16-2.20). <b><i>Conclusion:</i></b> Participants reporting frailty experienced nearly twice the risk of medically urgent falls or fractures compared to those who did not report frailty.
DOI: 10.6084/m9.figshare.9334793.v2
title: Datasets for the Role of Financial Investors in Commodity Futures Risk Premium

description: The datasets for the Role of Financial Investors on Commodity Futures Risk Premium are weekly datasets for the period from 1995 to 2015 for three commodities in the energy market: crude oil (WTI), heating oil, and natural gas. These datasets contain futures prices for different maturities, open interest positions for each commodity (long and short open interest positions), and S&P 500 composite index. The selected commodities are traded on the New York Mercantile Exchange (NYMEX). The data comes from the Thomson Reuters Datastream and from the Commodity Futures Trading Commission (CFTC).<br>
DOI: 10.6084/m9.figshare.14803701.v1
title: Genotype.xlsx

description: <b>Background:</b> Schizophrenia (SCZ) is a severe<i> </i>mental illness with high heritability. This study aimed to explore the correlation between <i>MAD1L1</i>, <i>TSNARE</i> polymorphisms and SCZ susceptibility.<b></b> <b>Methods: </b>A total of 493 patients with SCZ and 493 healthy controls were included. The genotypes of <i>MAD1L1 </i>and <i>TSNARE </i>polymorphisms<i> </i>were identified by the Agena MassARRAY platform. Odds ratio (OR) and 95% confidence intervals (CIs) were tested via logistic regression analysis in multiple genetic models and different subgroups. <b>Results:</b> We observed that AG genotype of rs1107592, AG genotype of rs4976976, and CA genotype of rs67756423 decreased the susceptibility to SCZ (<i>p </i>&lt; 0.05). The stratification analysis by age showed that the TC genotype of rs12666575, AG genotype of rs1107592, and AG genotype of rs4976976 decreased the risk of SCZ individuals older than 36 years (<i>p </i>&lt; 0.05). In addition, the AG and AA genotype of rs4976976, the CA genotype of rs67756423 were associated with a lower risk of SCZ in males (<i>p </i>&lt; 0.05). In females, the TT genotype of rs12666575 in recessive model, the AG and AA-AG genotype of rs1107592 in heterozygote and dominant model, could reduce the susceptibility to SCZ (<i>p </i>&lt; 0.05). <b></b> <b>Conclusions: </b>Our results suggest that <i>MAD1L1</i> and <i>TSNARE</i> genetic polymorphisms exert a protective role in the risk of SCZ. These findings provide evidence that <i>MAD1L1</i> and <i>TSNARE</i> may serve as potential biomarkers of SCZ.
DOI: 10.6084/m9.figshare.24354277.v2
title: Data from <i>Selection leads to false inferences of introgression using popular methods</i>

description: This includes data associated with the paper <i>Selection leads to false inferences of introgression using popular methods</i>. Data include simulated data files in various formats. Data are further described in the GitHub repository https://github.com/meganlsmith/selectionandmigration. Note that tar files had different names originally, but could not be stored in separate folders here. For this reason, please move things to individual folders before unpacking, as some items may have identical names otherwise.MS-style data from uniform simulations:uniform_params.tar.gz (parameters)uniform_testingSims_1250.tar.gz (low divergence)uniform_testingSims_5000.tar.gz (medium divergence)uniform_testingSims_20000.tar.gz (high divergence)MS-style data from complex simulations:complex_params.tar.gz (parameters)complex_testingSims_1250.tar.gz (low divergence)complex_testingSims_5000.tar.gz (medium divergence)complex_testingSims_20000.tar.gz (high divergence)complex_testingSims_200000.tar.gz (high divergence, scaling = 10)Site Frequency Spectra:sfs-uniform-testing-redo-revisions.tar.gz (uniform simulation SFS)sfs-complex-testing-redo-revisions.tar.gz (complex simulation SFS)Alignments:bpp_alignments.tar.gz<br>
DOI: 10.6084/m9.figshare.3562221.v1
title: Data Paper. Data Paper

description: File List baad.zip (MD5: 0a365cf79ab562a7985c426668fbc2a1) baad_data.zip (MD5: b9bc52c53be65506696a02862999ad9e) Description Understanding how plants are constructed; i.e., how key size dimensions and the amount of mass invested in different tissues varies among individuals; is essential for modeling plant growth, estimating carbon stocks, and mapping energy fluxes in the terrestrial biosphere. Allocation patterns can differ through ontogeny, but also among coexisting species and among species adapted to different environments. While a variety of models dealing with biomass allocation exist, we lack a synthetic understanding of the underlying processes. This is partly due to the lack of suitable data sets for validating and parameterizing models. To that end, we present the Biomass and allometry database (BAAD) for woody plants. The BAAD contains 259 634 measurements collected in 176 different studies, from 21 084 individuals across 678 species. Most of these data come from existing publications. However, raw data were rarely made public at time of publication. Thus the BAAD contains individual level data from different studies, transformed into standard units and variable names. The transformations were achieved using a common workflow for all raw data files. Other features that distinguish the BAAD are: (i) measurements were for individual plants rather than stand averages; (ii) individuals spanning a range of sizes were measured; (iii) inclusion of plants from 0.01–100 m in height; and (iii) biomass was estimated directly, i.e., not indirectly via allometric equations (except in very large trees where biomass was estimated from detailed sub-sampling). We included both wild and artificially grown plants. The data set contains the following size metrics: total leaf area; area of stem cross-section including sapwood, heartwood, and bark; height of plant and crown base, crown area, and surface area; and the dry mass of leaf, stem, branches, sapwood, heartwood, bark, coarse roots, and fine root tissues. We also report other properties of individuals (age, leaf size, leaf mass per area, wood density, nitrogen content of leaves and wood), as well as information about the growing environment (location, light, experimental treatment, vegetation type) where available. It is our hope that making these data available will improve our ability to understand plant growth, ecosystem dynamics, and carbon cycling in the world's vegetation. <i>Key words</i>: <i>allometric equations; biomass allocation; biomass partitioning; global carbon cycle; plant allometry; plant traits. </i>
DOI: 10.6084/m9.figshare.27092086.v3
title: Janus-particle Cytotoxicity Raw Data

description: This is the raw data used to make figures in the paper:
DOI: 10.6084/m9.figshare.28304357.v1
title: EASE 2025

description: Replication package for paper sent to EASE 2025.