cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34943/57bb8e50-0cb1-41f7-bba5-638f7704582f
title: Douglas Channel Junction Box Deployed 2022-07-13

description: The ONC Mini Junction Box 029 was deployed on 2022-07-13 at Douglas Channel. Douglas Channel is one of the principal inlets of the British Columbia coast. This device is a Junction Box. Junction Boxes supply power and communications to deployed instruments. Junction boxes have a number of serial and ethernet ports, including 400V ethernet ports that enable connections to other junction boxes and high-voltage instruments. Junction boxes can convert high voltages to lower voltages (15V, 24V or 48V) required by many instruments. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.5281/zenodo.5628181
title: Precision synthesis of reducing-end thiol-modified cellulose enabled by enzyme selection

description: We provide here the underlying data of the publication "Precision synthesis of reducing-end thiol-modified cellulose enabled by enzyme selection". Please find the abstract below. Enzyme-catalyzed iterative <em>β</em>-1,4-glycosylation of <em>β</em>-glycosides is promising for bottom-up polymerization of reducing-end-modified cello-oligosaccharide chains. Self-assembly of the chains from solution yields crystalline nanocellulose materials with properties that are tunable by the glycoside group used. Cellulose chains with a reducing-end thiol group are of interest to install a controllable pattern of site-selective modifications into the nanocellulose material. Selection of the polymerizing enzyme (cellodextrin phosphorylase; CdP) was pursued here to enhance the synthetic precision of <em>β</em>-1-thio-glucose conversion to generate pure “1-thio-cellulose” (≥95%) unencumbered by plain (unlabeled) cellulose resulting from enzymatic side reactions. The CdP from <em>Clostridium stercorarium</em> (<em>Cs</em>CdP) was 21 times more active on <em>β</em>-1-thio-glucose (0.17 U/mg; 45 °C) than the CdP from <em>Clostridium cellulosi</em> (<em>Cc</em>CdP), and it lacked hydrolase activity, which is substantial in <em>Cc</em>CdP, against the α-D-glucose 1-phosphate donor substrate. The combination of these enzyme properties indicated that <em>Cs</em>CdP is a practical catalyst for 1-thio-cellulose synthesis directly from <em>β</em>-1-thio-glucose (8 h; 25 mol% yield) that does not require a second enzyme (cellobiose phosphorylase), which was essential when using the less selective <em>Cc</em>CdP. The 1-thio-cellulose chains had an average degree of polymerization of ∼10 and were assembled into highly crystalline cellulose II crystallinity material.
DOI: 10.5281/zenodo.5628180
title: Precision synthesis of reducing-end thiol-modified cellulose enabled by enzyme selection

description: We provide here the underlying data of the publication "Precision synthesis of reducing-end thiol-modified cellulose enabled by enzyme selection". Please find the abstract below. Enzyme-catalyzed iterative <em>β</em>-1,4-glycosylation of <em>β</em>-glycosides is promising for bottom-up polymerization of reducing-end-modified cello-oligosaccharide chains. Self-assembly of the chains from solution yields crystalline nanocellulose materials with properties that are tunable by the glycoside group used. Cellulose chains with a reducing-end thiol group are of interest to install a controllable pattern of site-selective modifications into the nanocellulose material. Selection of the polymerizing enzyme (cellodextrin phosphorylase; CdP) was pursued here to enhance the synthetic precision of <em>β</em>-1-thio-glucose conversion to generate pure “1-thio-cellulose” (≥95%) unencumbered by plain (unlabeled) cellulose resulting from enzymatic side reactions. The CdP from <em>Clostridium stercorarium</em> (<em>Cs</em>CdP) was 21 times more active on <em>β</em>-1-thio-glucose (0.17 U/mg; 45 °C) than the CdP from <em>Clostridium cellulosi</em> (<em>Cc</em>CdP), and it lacked hydrolase activity, which is substantial in <em>Cc</em>CdP, against the α-D-glucose 1-phosphate donor substrate. The combination of these enzyme properties indicated that <em>Cs</em>CdP is a practical catalyst for 1-thio-cellulose synthesis directly from <em>β</em>-1-thio-glucose (8 h; 25 mol% yield) that does not require a second enzyme (cellobiose phosphorylase), which was essential when using the less selective <em>Cc</em>CdP. The 1-thio-cellulose chains had an average degree of polymerization of ∼10 and were assembled into highly crystalline cellulose II crystallinity material.
DOI: 10.34943/a4dce9eb-1132-4ce4-8130-c1361f463906
title: Douglas Channel Camera Lights Deployed 2022-07-13

description: The Ocean Networks Canada Light SN09 was deployed on 2022-07-13 at Douglas Channel. Douglas Channel is one of the principal inlets of the British Columbia coast. This device is a Camera Lights. Camera lights are used to improve visibility where cameras are deployed. Light controls and schedules can be remotely-controlled from on-shore using software. The length of time that lights are on is limited in order to minimize impact on the environment. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/ae9f355e-7055-4e27-b2d6-374855f7e911
title: Douglas Channel Camera Lights Deployed 2022-07-13

description: The Ocean Networks Canada Light SN10 was deployed on 2022-07-13 at Douglas Channel. Douglas Channel is one of the principal inlets of the British Columbia coast. This device is a Camera Lights. Camera lights are used to improve visibility where cameras are deployed. Light controls and schedules can be remotely-controlled from on-shore using software. The length of time that lights are on is limited in order to minimize impact on the environment. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.6084/m9.figshare.20341995
title: Supplementary Material for: Tissue Fixation with a Formic Acid-Deprived Formalin Better Preserves DNA Integrity over Time

description: <b><i>Introduction:</i></b> Optimization of pre-analytic procedures and tissue processing is a basic requirement for reliable and reproducible data to be obtained. Tissue fixation in formalin represents the extensively favored method for surgical tissue specimen processing in diagnostic pathology; however, formalin fixation exerts a blasting effect on DNA and RNA. <b><i>Methods:</i></b> A formic acid-deprived formaldehyde solution was prepared by removing acids with an ion-exchange basic resin and the concentrated, acid-deprived formaldehyde (ADF) solution was employed to prepare a 4% ADF solution in 0.1 M phosphate buffer, pH 7.2–7.4. Human (<i>n</i> = 27) and mouse (<i>n</i> = 20) tissues were fixed in parallel and similar conditions in either ADF or neutral buffered formalin (NBF). DNAs and RNAs were extracted, and fragmentation analyses were performed. <b><i>Results:</i></b> Besides no significant differences in terms of extraction yield and absorbance ratio, ADF fixation reduced DNA fragmentation, i.e., the largest fragments (&gt;5,000 bp) were significantly more prevalent in the DNAs purified from ADF-fixed tissues (<i>p</i> &lt; 0.001 in both cohorts). Moreover, we observed that DNA preservation is more stable in ADF-fixed tissue compared to NBF-fixed tissues. <b><i>Conclusion:</i></b> Although DNA fragmentation in FFPE tissues is a multifactor process, we showed that the removal of formic acid is responsible for a significant improvement in DNA preservation.
DOI: 10.6084/m9.figshare.20342715
title: Benchmarking DNA Methylation Analysis of 14 Alignment Algorithms for Whole Genome Bisulfite Sequencing in Mammals&gt;

description: <strong>Title: </strong> <br> <strong>The detailed results for Real Dataset B were provided: the position, methylation levels, and mapped read coverage of CpG sites detected by each of five algorithms (Bwa-meth, BSBolt, BSMAP, Bismark-bwt2-e2e and Walt) as well as DMCs and DMRs extracted from the CpG sites (&gt;= 10 coverage).</strong> <br>
DOI: 10.6084/m9.figshare.20342715.v1
title: Benchmarking DNA Methylation Analysis of 14 Alignment Algorithms for Whole Genome Bisulfite Sequencing in Mammals&gt;

description: <strong>Title: </strong> <br> <strong>The detailed results for Real Dataset B were provided: the position, methylation levels, and mapped read coverage of CpG sites detected by each of five algorithms (Bwa-meth, BSBolt, BSMAP, Bismark-bwt2-e2e and Walt) as well as DMCs and DMRs extracted from the CpG sites (&gt;= 10 coverage).</strong> <br>
DOI: 10.34943/87f15345-edac-4634-8efd-5e4bc86e02aa
title: Douglas Channel Video Camera Deployed 2022-07-13

description: The Axis P1364 Camera SN ACCC8E89128D was deployed on 2022-07-13 at Douglas Channel. Douglas Channel is one of the principal inlets of the British Columbia coast. This device is a Video Camera. Video cameras record video of characteristics of the surrounding environments and can be deployed on fixed and mobile platforms. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.5281/zenodo.4265431
title: Ecological effects of stress drive bacterial evolvability under sub-inhibitory antibiotic treatments

description: Code and data for our publication "Ecological effects of stress drive bacterial evolvability under sub-inhibitory antibiotic treatments"
DOI: 10.5281/zenodo.4265430
title: Ecological effects of stress drive bacterial evolvability under sub-inhibitory antibiotic treatments

description: Code and data for our publication "Ecological effects of stress drive bacterial evolvability under sub-inhibitory antibiotic treatments"
DOI: 10.6084/m9.figshare.19615159
title: Does standardisation improve post-operative anaesthesia handoffs? Meta-analyses on provider, patient, organisational, and handoff outcomes

description: Anaesthesia handoffs are associated with negative outcomes (e.g. inappropriate treatments, post-operative complications, and in-hospital mortality). To minimise these adverse outcomes, federal bodies (e.g. Joint Commission) have mandated handoff standardisation. Due to the proliferation of handoff interventions and research, there is a need to meta-analyze anaesthesia handoffs. Therefore, we performed meta-analyses on the provider, patient, organisational, and handoff outcomes related to post-operative anaesthesia handoff protocols. We meta-analysed 41 articles with post-operative anaesthesia handoffs that implemented a standardised handoff protocol. Compared to no standardisation, a standardised post-operative anaesthesia handoff changed provider outcomes with an <i>OR</i> of 4.03 (95% CI 3.20–5.08), patient outcomes with an <i>OR</i> of 1.49 (95% CI 1.32–1.69), organisational outcomes with an <i>OR</i> of 4.25 (95% CI 2.51–7.19), handoff outcomes with an <i>OR</i> of 8.52 (95% CI 7.05–10.31). Our meta-analyses demonstrate that standardised post-operative anaesthesia handoffs altered patient, provider, organisational, and handoff outcomes. <b>Practitioner Summary:</b> We conducted meta-analyses to assess the effects of post-operative anaesthesia handoff standardisation on provider, patient, organisational, and handoff outcomes. Our findings suggest that standardised post-operative anaesthesia handoffs changed all listed outcomes in a positive direction. We discuss the implications of these findings as well as notable limitations in this literature base.
DOI: 10.6084/m9.figshare.19615159.v1
title: Does standardisation improve post-operative anaesthesia handoffs? Meta-analyses on provider, patient, organisational, and handoff outcomes

description: Anaesthesia handoffs are associated with negative outcomes (e.g. inappropriate treatments, post-operative complications, and in-hospital mortality). To minimise these adverse outcomes, federal bodies (e.g. Joint Commission) have mandated handoff standardisation. Due to the proliferation of handoff interventions and research, there is a need to meta-analyze anaesthesia handoffs. Therefore, we performed meta-analyses on the provider, patient, organisational, and handoff outcomes related to post-operative anaesthesia handoff protocols. We meta-analysed 41 articles with post-operative anaesthesia handoffs that implemented a standardised handoff protocol. Compared to no standardisation, a standardised post-operative anaesthesia handoff changed provider outcomes with an <i>OR</i> of 4.03 (95% CI 3.20–5.08), patient outcomes with an <i>OR</i> of 1.49 (95% CI 1.32–1.69), organisational outcomes with an <i>OR</i> of 4.25 (95% CI 2.51–7.19), handoff outcomes with an <i>OR</i> of 8.52 (95% CI 7.05–10.31). Our meta-analyses demonstrate that standardised post-operative anaesthesia handoffs altered patient, provider, organisational, and handoff outcomes. <b>Practitioner Summary:</b> We conducted meta-analyses to assess the effects of post-operative anaesthesia handoff standardisation on provider, patient, organisational, and handoff outcomes. Our findings suggest that standardised post-operative anaesthesia handoffs changed all listed outcomes in a positive direction. We discuss the implications of these findings as well as notable limitations in this literature base.
DOI: 10.6084/m9.figshare.20343102
title: Supplementary Material for: The Impact of Maternal Age on the Neonatal Electrocardiogram

description: <b><i>Background:</i></b> Previous studies have suggested an increased prevalence of congenital heart disease among children born to women aged ≥35 years. In recent decades, the mother’s age at childbirth has increased dramatically in industrialized countries. It has not been investigated if increasing maternal age affects the neonatal cardiac electrical system. <b><i>Methods:</i></b> The Copenhagen Baby Heart Study is a prospective general population study that performed cardiac evaluation in newborns. Electrocardiograms were analyzed with a computerized algorithm. <b><i>Results:</i></b> We included 16,518 newborns with normal echocardiograms (median age 11 days; range 0–30 days; 52% boys). Median maternal age at delivery was 31 years; 790 newborns were born to mothers aged between 16 and 24 years, 11,403 between 25 and 34 years, 4,279 between 35 and 44 years, and 46 newborns had mothers aged between 45 and 54 years. The QRS axis and maximum R-wave amplitude in V1 (R-V1) differed across the four maternal age groups (both <i>p</i> &lt; 0.01), with absolute differences of 3.5% (114 vs. 110°) and 12% (1,152 vs. 1,015 µV), respectively, between newborns with the youngest and oldest mothers. Associations between maternal age and the QRS axis and R-V1 remained significant after multifactorial adjustment. Heart rate, PR interval, QRS duration, uncorrected QT interval, QTcBazett, and maximum amplitudes of S-V1, R-V6, and S-V6 were not associated with maternal age (all <i>p</i> &gt; 0.05). <b><i>Conclusion:</i></b> We observed a significant association between maternal age and the neonatal QRS axis and R-V1. However, the absolute differences were relatively small and maternal age is unlikely to have a clinically significant effect on the neonatal cardiac electrical system.
DOI: 10.5281/zenodo.6866486
title: A Dataset of Synthetic Images of Outdoor Scenes Taken from Sidewalks, for Temporal Semantic Segmentation Applications

description: This dataset has been generated using the CARLA simulator (release 0.9.11), an open-source 3D simulator for experiments in autonomous vehicle, based on the Unreal Engine game engine. It comes with pre-made city environment maps. CARLA is distributed with several integrated maps as well as parameters to increase the variety in the dataset. In the release that we have used, there are 13 semantic segmentation classes: None, Building, Fence, Other, Pedestrian, Pole, Lane-marking, Road, Sidewalk, Vegetation, Vehicle, Wall, and Traffic sign. The "None" category corresponds to textures that are not part of an object, such as lawns which are not part of "Vegetation", or sky. In the “Other” category are found objects that are not included in the other classes like plant and flower pots. For smart mobility applications, the “Sidewalks” and “Road” classes are of particular importance to find the way forward, as well as “Buildings” and “Poles” for obstacle avoidance. Sequences are made of 4 images. The dataset is composed of 46436 frames (11609 sequences) partitioned in 41024 frames (10256 sequences) for train, 2696 frames (674 sequences) for validation, and 2716 for test (679 sequences). The size of the images is 800 x 600 (resp. width x height). Additionaly, we have generated another smaller dataset with images taken from 2 different viewpoints: one located on the road and the other located on the sidewalk. The number of frames for train/validation/test is respectively 7288 (1822 sequences) partitioned in 6344 (1687 sequences) for train, 416 frames (104 sequences) for validation, and 424 for test (106 sequences). This smaller dataset is aimed at showing the importance of the viewpoint in the result of semantic segmentation. This can be done by cross-validation: learning on images taken from a viewpoint located on the road and test on images with a viewpoint located on the sidewalk, and vice versa.
DOI: 10.5281/zenodo.6802654
title: A Dataset of Synthetic Images of Outdoor Scenes Taken from Sidewalks, for Temporal Semantic Segmentation Applications

description: This dataset has been generated using the CARLA simulator (release 0.9.11), an open-source 3D simulator for experiments in autonomous vehicle, based on the Unreal Engine game engine. It comes with pre-made city environment maps. CARLA is distributed with several integrated maps as well as parameters to increase the variety in the dataset. In the release that we have used, there are 13 semantic segmentation classes: None, Building, Fence, Other, Pedestrian, Pole, Lane-marking, Road, Sidewalk, Vegetation, Vehicle, Wall, and Traffic sign. The "None" category corresponds to textures that are not part of an object, such as lawns which are not part of "Vegetation", or sky. In the “Other” category are found objects that are not included in the other classes like plant and flower pots. For smart mobility applications, the “Sidewalks” and “Road” classes are of particular importance to find the way forward, as well as “Buildings” and “Poles” for obstacle avoidance. Sequences are made of 4 images. The dataset is composed of 46436 frames (11609 sequences) partitioned in 41024 frames (10256 sequences) for train, 2696 frames (674 sequences) for validation, and 2716 for test (679 sequences). The size of the images is 800 x 600 (resp. width x height). Additionaly, we have generated another smaller dataset with images taken from 2 different viewpoints: one located on the road and the other located on the sidewalk. The number of frames for train/validation/test is respectively 7288 (1822 sequences) partitioned in 6344 (1687 sequences) for train, 416 frames (104 sequences) for validation, and 424 for test (106 sequences). This smaller dataset is aimed at showing the importance of the viewpoint in the result of semantic segmentation. This can be done by cross-validation: learning on images taken from a viewpoint located on the road and test on images with a viewpoint located on the sidewalk, and vice versa.
DOI: 10.5281/zenodo.6804323
title: Twitter Conversations about the COVID-19 Omicron Variant: A Large Scale Dataset of more than 500,000 Tweets

description: <strong>Please cite the following paper when using this dataset:</strong> N. Thakur and C.Y. Han, “An Exploratory Study of Tweets about the SARS-CoV-2 Omicron Variant: Insights from Sentiment Analysis, Language Interpretation, Source Tracking, Type Classification, and Embedded URL Detection,” Preprints, 2022, DOI: 10.20944/preprints202205.0238.v2 <strong>Abstract</strong> This open-access dataset is one of the salient contributions of the above-mentioned paper. It presents a <strong>total of 537,702 Tweet IDs</strong> of the same number of Tweets about the SARS-CoV-2 Omicron Variant posted on Twitter since the first detected case of this variant on November 24, 2021. The dataset is compliant with the privacy policy, developer agreement, and guidelines for content redistribution of Twitter, as well as with the FAIR principles (Findability, Accessibility, Interoperability, and Reusability) principles for scientific data management. <strong>Data Description</strong> The Tweet IDs are presented in 7 different .txt files based on the timelines of the associated tweets. The following table provides the details of these dataset files. The data collection followed a keyword-based approach and tweets comprising the "omicron" keyword were filtered, collected, and added to this dataset. Filename No. of Tweet IDs Date Range of the Tweet IDs TweetIDs_November.txt 17271 November 24, 2021 to November 30, 2021 TweetIDs_December.txt 101393 December 1, 2021 to December 31, 2021 TweetIDs_January.txt 95055 January 1, 2022 to January 31, 2022 TweetIDs_February.txt 91571 February 1, 2022 to February 28, 2022 TweetIDs_March.txt 100787 March 1, 2022 to March 31, 2022 TweetIDs_April.txt 94409 April 1, 2022 to April 20, 2022 TweetIDs_May.txt 37216 May 1, 2022 to May 12, 2022 In the above table, the last date for May is May 12 as it was the most recent date at the time of data collection and dataset upload. The dataset would be updated soon to incorporate more recent tweets. The dataset contains only Tweet IDs in compliance with the terms and conditions mentioned in the privacy policy, developer agreement, and guidelines for content redistribution of Twitter. The Tweet IDs need to be hydrated to be used. For hydrating this dataset the Hydrator application (link to download and a step-by-step tutorial on how to use Hydrator) may be used.
DOI: 10.17894/ucph.67f32f58-4c18-42b5-89b1-1e36d38673cc
title: Data for IMPACT OF COVID-19 PANDEMIC ON CANCER SCREENING IN DENMARK - A register-based study

description: Data results used for a register study at Centre for Epidemiological Research, Nykøbing F. Hospital. Dataset contains aggregated weekly numbers of performed ccervical cancer screenings (SMEARs) and mammography screenings performed from 2017-2021.
DOI: 10.6084/m9.figshare.20343141
title: Evidence Gaps in Clinical Trials of Pharmacologic Treatments for H1-Antihistamine-Refractory CSU

description: Details of the dataset of participant and trial characteristics and reporting of outcome in clinical trials of pharmacologic treatments for H1-antihistamine-refractory chronic spontaneous urticaria
DOI: 10.6084/m9.figshare.20343141.v1
title: Evidence Gaps in Clinical Trials of Pharmacologic Treatments for H1-Antihistamine-Refractory CSU

description: Details of the dataset of participant and trial characteristics and reporting of outcome in clinical trials of pharmacologic treatments for H1-antihistamine-refractory chronic spontaneous urticaria
DOI: 10.21985/n2-t2mw-wg40
title: IMDb data files
DOI: 10.5281/zenodo.6866820
title: Data set related to the manuscript "Understanding the chemical shifts of aqueous electrolyte species adsorbed in carbon nanopores"

description: Graphical files in the agr format for all the figures in the manuscript entitled "Understanding the chemical shifts of aqueous electrolyte species adsorbed in carbon nanopores". Examples of input files for the density functional theory, lattice and molecular dynamics simulations are also provided.