cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4744767
title: Crosswalks among metadata schemas for data cube descriptions in RELIANCE

description: This Excel file contains crosswalks among different metadata schemas that can be used for the description of data cubes in the areas of Marine Science, Earth Sciences and Climate Research. These data cubes common contain observations of some variables in some feature of interest, taken by Earth Observation systems (e.g., satellites) or as in-situ observations.
DOI: 10.5281/zenodo.4744760
title: Hydropsyche betteni SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4744759
title: Hydropsyche betteni SPAdes preassembly

description: .
DOI: 10.6084/m9.figshare.14543223
title: Cone Mosaic

description: Cone mosaic object and the parameters for the cone mosaic (lens, macular pigment and photopigment) we simulated in our analysis.
DOI: 10.6084/m9.figshare.14543223.v2
title: Cone Mosaic

description: Cone mosaic object and the parameters for the cone mosaic (lens, macular pigment and photopigment) we simulated in our analysis.
DOI: 10.6084/m9.figshare.14543223.v1
title: Cone Mosaic

description: Parameters for the cone mosaic (lens, macular pigment and photopigment) we simulated in our analysis.
DOI: 10.5281/zenodo.4744774
title: Hypoxylon intermedium SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4744773
title: Hypoxylon intermedium SPAdes preassembly

description: .
DOI: 10.5517/ccdc.csd.cc267lhk
title: CCDC 2033088: Experimental Crystal Structure Determination

description: Related Article: Zhonghua Li, Lingyu Wang, Ying Wang, Songgu Wu, Junbo Gong|2021|Cryst.Growth Des.|21|2643|doi:10.1021/acs.cgd.0c01377
DOI: 10.5517/ccdc.csd.cc267lkm
title: CCDC 2033090: Experimental Crystal Structure Determination

description: Related Article: Zhonghua Li, Lingyu Wang, Ying Wang, Songgu Wu, Junbo Gong|2021|Cryst.Growth Des.|21|2643|doi:10.1021/acs.cgd.0c01377
DOI: 10.5517/ccdc.csd.cc267ljl
title: CCDC 2033089: Experimental Crystal Structure Determination

description: Related Article: Zhonghua Li, Lingyu Wang, Ying Wang, Songgu Wu, Junbo Gong|2021|Cryst.Growth Des.|21|2643|doi:10.1021/acs.cgd.0c01377
DOI: 10.5281/zenodo.4744780
title: Juncus effusus SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4744779
title: Juncus effusus SPAdes preassembly

description: .
DOI: 10.6084/m9.figshare.12000228
title: Effect of <i>glgB</i>/GASBD fusion gene expression on increased branching degree of potato starch and changes in physicochemical properties of starch

description: The objective of this study was to investigate the influence of granule-bound starch-binding domain fusion gene expression on the structure and properties of potato starch. The glgB/GASBD fusion gene and the glgB gene for control were transferred into the potato cultivar Desiree using Agrobacterium-mediated method, which were expressed in potato tubers driven by the potato granule-bound starch synthase gene promoter. The accumulation of glgB/GASBD fusion protein in starch granules was analyzed by Western blot hybridization. A large amount of glgB/GASBD fusion protein was found to accumulate in the starch granules, and the position of the GASBD in the fusion protein (at the N-terminus or at the C-terminus) had no significant effect on the accumulation of the fusion protein in the starch granules. An increase in the degree of branching of the starch results in a specific change in the physical and chemical properties and functional properties of the starch.
DOI: 10.6084/m9.figshare.12000228.v1
title: Effect of <i>glgB</i>/GASBD fusion gene expression on increased branching degree of potato starch and changes in physicochemical properties of starch

description: The objective of this study was to investigate the influence of granule-bound starch-binding domain fusion gene expression on the structure and properties of potato starch. The glgB/GASBD fusion gene and the glgB gene for control were transferred into the potato cultivar Desiree using Agrobacterium-mediated method, which were expressed in potato tubers driven by the potato granule-bound starch synthase gene promoter. The accumulation of glgB/GASBD fusion protein in starch granules was analyzed by Western blot hybridization. A large amount of glgB/GASBD fusion protein was found to accumulate in the starch granules, and the position of the GASBD in the fusion protein (at the N-terminus or at the C-terminus) had no significant effect on the accumulation of the fusion protein in the starch granules. An increase in the degree of branching of the starch results in a specific change in the physical and chemical properties and functional properties of the starch.
DOI: 10.6084/m9.figshare.13490248.v1
title: Analysis of organic molecules, physicochemical parameters, and pollen as indicators for authenticity, botanical origin, type and quality of honey samples examined

description: To contribute to Chilean honey’s characterization, 12 honey samples were analyzed using comprehensive physicochemical and pollen analyses. Beekeepers donated samples from La Pintana, Linderos, Cajón del Maipo, and Chiloé. Physicochemical parameters required for honey authentication such as free acidity (in range of 9.5–46 meq/kg), hydroxymethylfurfural (0–8 mg/kg), humidity (14.4–16.9%), sugar profile, amino acid profile, organic acid profile, pH (3.8–4.7), electrical conductivity (0.25–1.47 mS/cm) and diastase activity (28.6–43.8 ºG), were determined by conventional techniques and nuclear magnetic resonance (NMR) at an international quality control laboratory for honey analyses. The Chilean honey samples analyzed showed physicochemical properties in normal ranges and typical sugar profiles for natural honey, which confirmed their authenticity and high quality.
DOI: 10.6084/m9.figshare.13490248
title: Analysis of organic molecules, physicochemical parameters, and pollen as indicators for authenticity, botanical origin, type and quality of honey samples examined

description: To contribute to Chilean honey’s characterization, 12 honey samples were analyzed using comprehensive physicochemical and pollen analyses. Beekeepers donated samples from La Pintana, Linderos, Cajón del Maipo, and Chiloé. Physicochemical parameters required for honey authentication such as free acidity (in range of 9.5–46 meq/kg), hydroxymethylfurfural (0–8 mg/kg), humidity (14.4–16.9%), sugar profile, amino acid profile, organic acid profile, pH (3.8–4.7), electrical conductivity (0.25–1.47 mS/cm) and diastase activity (28.6–43.8 ºG), were determined by conventional techniques and nuclear magnetic resonance (NMR) at an international quality control laboratory for honey analyses. The Chilean honey samples analyzed showed physicochemical properties in normal ranges and typical sugar profiles for natural honey, which confirmed their authenticity and high quality.
DOI: 10.6084/m9.figshare.14562318
title: Sample Drug-Target interaction

description: Sample Drug-Target interaction
DOI: 10.6084/m9.figshare.14562318.v1
title: Sample Drug-Target interaction

description: Sample Drug-Target interaction
DOI: 10.5281/zenodo.4744804
title: Anisolabis maritima SPAdes preassembly

description: ..
DOI: 10.5281/zenodo.4744803
title: Anisolabis maritima SPAdes preassembly

description: ..
DOI: 10.25919/7d8x-r611
title: Parkes observations for project P1050 semester 2021APRS_02

description: This is a request for observing time for the timing campaign of new pulsar discoveries from the reprocessing of the low-latitude Galactic plane section of the HTRU survey (P630). We have now completed 80 % of the survey with GPU based coherent acceleration search, template bank and fast folding algorithm pipelines, and now have discovered 68 previously unknown pulsars and 21 "class A" pulsars awaiting confirmation. Interesting science can usually only be derived from a new pulsar after confirmation and a follow-up timing campaign is carried out. One year of initial timing is the minimum timespan required to fully characterise any newly-discovered pulsars, essential for deriving pulsar parameters such as the characteristic age, magnetic field strength, spin-down rate, as well as to detect any unexpected behaviour of the pulsar which might result from emission instabilities. This timing project is necessary for the timing of the new double neutron star (DNS) system J1325-6253 discovered last semester and for following up our confirmed/to-be confirmed new pulsars from the HTRU Galactic plane survey. Pulsars on the observing list here have been confirmed and remaining candidates will be confirmed in the current 2020OCTS semester, the follow-up timing in 2021APRS will produce completely new and exciting results. In addition, this timing project will allow us to measure the advance of periastron of PSR J1325-6253, true Galactic plane pulsar population and boundaries of pulsar parameter space in the galactic plane.
DOI: 10.6084/m9.figshare.12726932
title: Genome assembly and annotation files of Medicago ruthenica

description: Genome assembly, annotation, CDS, and gene information files of <i>Medicago ruthenica</i>
DOI: 10.6084/m9.figshare.14562330
title: Non-Proportional Hazards in Survival Analysis: A Partial Logistic Artificial Neural Network Approach

description: Marriage to first birth interval in Nigeria data<br>
DOI: 10.6084/m9.figshare.14562330.v1
title: Non-Proportional Hazards in Survival Analysis: A Partial Logistic Artificial Neural Network Approach

description: Marriage to first birth interval in Nigeria data<br>
DOI: 10.6084/m9.figshare.14562333
title: AMB_paper_surveydata.xlsx

description: Survey data for the ABM paper.
DOI: 10.6084/m9.figshare.14562333.v1
title: AMB_paper_surveydata.xlsx

description: Survey data for the ABM paper.
DOI: 10.25345/c5kr6n
title: MassIVE MSV000087391 - SARS-CoV-2 Nucleocapsid protein Native Top-down
title: Native top-down analysis via ETnoD and HCD on the Orbitrap Eclipse of SARS-CoV-2 nucleocapsid (N) protein heterologously expressed in E. coli
DOI: 10.21227/f7v4-z806
title: Weather Data 2016

description: The dataset was meteorological data (London Meteorological data) downloaded from http://www.urban-climate.net/content/data/9-data for 2016 consisting of 8784 data. This dataset had many features, but researchers only selected attributes related to wind speed prediction
DOI: 10.5281/zenodo.4740700
title: Order and disorder – an integrative structure of the full-length human growth hormone receptor -- Models, back-mapped structures and SAXS fits

description: Data and support files for the models and SAXS fits reported in the manuscript: "Order and disorder – an integrative structure of the full-length human growth hormone receptor" by Kassem and Araya-Secchi et al. In this data set: - Models of the GHR-ECDfl generated with Rosetta Floppy-Tail. - Models of the GHR-ECD+TMD generated with Rosetta Domain-assembly protocol. -Backmapped structures (CG-AA) of: i) Structures of the GHR-ICD from simulations with the Martini3 forcefield with different degrees of scaling of the protein-water interactions. Unbiased and MEtaD(Rg) simulations. ii) Structures of the GHRfl-GFP from a simulation (in a POPC bilayer) performed using the Martini3 forcefield and a protein-water interaction scaling of +10%. - Fits of the SAXS data obtained from GHRfl-GFP in a NanoDisc with theoretical scattering obtained from backmmaped structures from the GHRfl-GFP_M3pws10 simulation. Fits performed with WillItFit Other related input files available at: https://github.com/Niels-Bohr-Institute-XNS-StructBiophys/GHRModel
DOI: 10.5281/zenodo.4740699
title: Order and disorder – an integrative structure of the full-length human growth hormone receptor -- Models, back-mapped structures and SAXS fits

description: Data and support files for the models and SAXS fits reported in the manuscript: "Order and disorder – an integrative structure of the full-length human growth hormone receptor" by Kassem and Araya-Secchi et al. In this data set: - Models of the GHR-ECDfl generated with Rosetta Floppy-Tail. - Models of the GHR-ECD+TMD generated with Rosetta Domain-assembly protocol. -Backmapped structures (CG-AA) of: i) Structures of the GHR-ICD from simulations with the Martini3 forcefield with different degrees of scaling of the protein-water interactions. Unbiased and MEtaD(Rg) simulations. ii) Structures of the GHRfl-GFP from a simulation (in a POPC bilayer) performed using the Martini3 forcefield and a protein-water interaction scaling of +10%. - Fits of the SAXS data obtained from GHRfl-GFP in a NanoDisc with theoretical scattering obtained from backmmaped structures from the GHRfl-GFP_M3pws10 simulation. Fits performed with WillItFit Other related input files available at: https://github.com/Niels-Bohr-Institute-XNS-StructBiophys/GHRModel
DOI: 10.17632/3ztg4yv8wf.1
title: Data for: Comparison of pre-diagnosis Dietary Intake of Women with Gestational Diabetes Mellitus to Dietary Recommendations.

description: Protocol for manuscript "Comparison of pre-diagnosis Dietary Intake of Women with Gestational Diabetes Mellitus to Dietary Recommendations".
DOI: 10.17632/d8d86bd8wh.1
title: Data for: 'She practise every day but still make mistakes': Spoken and written production of inflectional morphology among L1 Mandarin speakers of English.

description: This dataset contains original coded data for the paper listed above: The data files should be viewed in the following order: Experiment 1: 1a_masterfile.csv / Omissions_1a_masterfile.csv / OPT scores.csv Experiment 2: 1b_masterfile.csv / Omissions_1b_masterfile.csv / 1b_M_scores.csv Experiment 3: written_masterfile.csv / Omissions_W_masterfile.csv / written_M_scores Modality: Experiment.masterfile.csv / Omissions_Mod.csv
DOI: 10.5281/zenodo.4744840
title: CoVaxxy Tweet IDs data set

description: A collection of Tweet IDs related to Covid-19 Vaccines, gathered from Twitter since Jan 4, 2021. Please see https://arxiv.org/abs/2101.07694 for more information.
DOI: 10.25913/7bh8-bv76
title: Identifying links in terrorist networks through machine learning on explosives chemical composition data
DOI: 10.5281/zenodo.4744865
title: Extended Cookbook Data Extraction and Recommendations

description: Extended Cookbook Data Extraction and Recommendations
DOI: 10.5281/zenodo.4744864
title: Extended Cookbook Data Extraction and Recommendations

description: Extended Cookbook Data Extraction and Recommendations
DOI: 10.5281/zenodo.4719296
title: Marine Magnetic Anomaly Data in the East Pacific Rise and the Southeast Indian Ridge Reflected Geomagnetic Field Paleointensity Spanning the Past 11 Myr

description: In order to reconstruct the paleointensity variations in the past 11 Myr, we analyzed magnetic anomaly profiles in three different areas from the East Pacific Rise and the Southeast Indian Ridge. After error analysis and signal processes, 11 profiles in Area1, 9 profiles in Area2, and 12 profiles in Area3 were converted to time, and then were stacked, respectively. We showed each processed magnetic anomaly profile and the stacked profiles as well as the confidence intervals in each area.
description: {"references": ["Li, Y., Liu, J., Liu, Q., (2021),Geomagnetic Field Paleointensity Spanning the Past 11 Myr from Marine Magnetic Anomalies in the Southern Hemisphere. Geophysical Research Letters"]}
DOI: 10.5281/zenodo.4719295
title: Marine Magnetic Anomaly Data in the East Pacific Rise and the Southeast Indian Ridge Reflected Geomagnetic Field Paleointensity Spanning the Past 11 Myr

description: In order to reconstruct the paleointensity variations in the past 11 Myr, we analyzed magnetic anomaly profiles in three different areas from the East Pacific Rise and the Southeast Indian Ridge. After error analysis and signal processes, 11 profiles in Area1, 9 profiles in Area2, and 12 profiles in Area3 were converted to time, and then were stacked, respectively. We showed each processed magnetic anomaly profile and the stacked profiles as well as the confidence intervals in each area.
description: {"references": ["Li, Y., Liu, J., Liu, Q., (2021),Geomagnetic Field Paleointensity Spanning the Past 11 Myr from Marine Magnetic Anomalies in the Southern Hemisphere. Geophysical Research Letters"]}
DOI: 10.25345/c5fz4q
title: MassIVE MSV000087392 - GNPS Streptomyces secondary metabolites positive mode-1
title: Secondary metabolites from endophytic Streptomyces sp. Ethyl acetate extract. LC-MS/MS positive mode.
DOI: 10.6084/m9.figshare.14562678
title: GE_elev_data

description: Elevation differences
DOI: 10.25345/c5b824
title: MassIVE MSV000087393 - GNPS Stenotrophomonas secondary metabolites positive mode-1
title: Secondary metabolites from endophytic Stenotrophomonas sp. Ethyl acetate extract. LC-MS/MS positive mode.
DOI: 10.6084/m9.figshare.14562705.v1
title: Additional file 1 of COVID-19 one year into the pandemic: from genetics and genomics to therapy, vaccination, and policy

description: Additional file 1: Table S1. List of genomes used in the analysis. We gratefully acknowledge the following Authors from the Originating laboratories responsible for obtaining the specimens, as well as the Submitting laboratories where the genome data were generated and shared via GISAID, on which this research is based.
DOI: 10.6084/m9.figshare.14562705
title: Additional file 1 of COVID-19 one year into the pandemic: from genetics and genomics to therapy, vaccination, and policy

description: Additional file 1: Table S1. List of genomes used in the analysis. We gratefully acknowledge the following Authors from the Originating laboratories responsible for obtaining the specimens, as well as the Submitting laboratories where the genome data were generated and shared via GISAID, on which this research is based.
DOI: 10.6084/m9.figshare.14562734
title: Additional file 2 of HDAC4 degradation during senescence unleashes an epigenetic program driven by AP-1/p300 at selected enhancers and super-enhancers

description: Additional file 2: Supplementary Table S1/bed formatted file of 1053 SES, identified in replicative senescence and OIS.
DOI: 10.6084/m9.figshare.14562734.v1
title: Additional file 2 of HDAC4 degradation during senescence unleashes an epigenetic program driven by AP-1/p300 at selected enhancers and super-enhancers

description: Additional file 2: Supplementary Table S1/bed formatted file of 1053 SES, identified in replicative senescence and OIS.
DOI: 10.6084/m9.figshare.14562737.v1
title: Additional file 3 of HDAC4 degradation during senescence unleashes an epigenetic program driven by AP-1/p300 at selected enhancers and super-enhancers

description: Additional file 3: Supplementary Table S2/List of TFs predicted to regulate the transcripts associated with SEs activated and hyper-acetylated in SK-LMS-1/HDAC4−/− cells.
DOI: 10.6084/m9.figshare.14562752.v1
title: Additional file 8 of HDAC4 degradation during senescence unleashes an epigenetic program driven by AP-1/p300 at selected enhancers and super-enhancers

description: Additional file 8: Supplementary Table S7/List of the genes belonging to the NFκβ, SASP and RIS signatures analyzed in this manuscript.
DOI: 10.6084/m9.figshare.14562737
title: Additional file 3 of HDAC4 degradation during senescence unleashes an epigenetic program driven by AP-1/p300 at selected enhancers and super-enhancers

description: Additional file 3: Supplementary Table S2/List of TFs predicted to regulate the transcripts associated with SEs activated and hyper-acetylated in SK-LMS-1/HDAC4−/− cells.
DOI: 10.6084/m9.figshare.14562749.v1
title: Additional file 7 of HDAC4 degradation during senescence unleashes an epigenetic program driven by AP-1/p300 at selected enhancers and super-enhancers

description: Additional file 7: Supplementary Table S6/List of the antibodies used in this paper.
DOI: 10.6084/m9.figshare.14562746.v1
title: Additional file 6 of HDAC4 degradation during senescence unleashes an epigenetic program driven by AP-1/p300 at selected enhancers and super-enhancers

description: Additional file 6: Supplementary Table S5/List of primers used for cloning, genome editing and PCR.
DOI: 10.6084/m9.figshare.14562743.v1
title: Additional file 5 of HDAC4 degradation during senescence unleashes an epigenetic program driven by AP-1/p300 at selected enhancers and super-enhancers

description: Additional file 5: Supplementary Table S4/List of the 382 SES identified by ROSE algorithm in SK-LMS-1 HDAC4 depleted cells.
DOI: 10.6084/m9.figshare.14562740.v1
title: Additional file 4 of HDAC4 degradation during senescence unleashes an epigenetic program driven by AP-1/p300 at selected enhancers and super-enhancers

description: Additional file 4: Supplementary Table S3/Acetylation ratio calculated between the HDAC4 KO and HDAC4 WT samples, centered on the genomic loci shown in Fig. 4g.
DOI: 10.6084/m9.figshare.14562752
title: Additional file 8 of HDAC4 degradation during senescence unleashes an epigenetic program driven by AP-1/p300 at selected enhancers and super-enhancers

description: Additional file 8: Supplementary Table S7/List of the genes belonging to the NFκβ, SASP and RIS signatures analyzed in this manuscript.
DOI: 10.6084/m9.figshare.14562749
title: Additional file 7 of HDAC4 degradation during senescence unleashes an epigenetic program driven by AP-1/p300 at selected enhancers and super-enhancers

description: Additional file 7: Supplementary Table S6/List of the antibodies used in this paper.
DOI: 10.25345/c56f98
title: MassIVE MSV000087394 - GNPS MN SDU36 extract final 0510
title: Myxococcus sp. SDU36 isolated from the sediment sample of the Dongcuo Lake in Ngari of Tibet (P.R. China)
DOI: 10.6084/m9.figshare.14562746
title: Additional file 6 of HDAC4 degradation during senescence unleashes an epigenetic program driven by AP-1/p300 at selected enhancers and super-enhancers

description: Additional file 6: Supplementary Table S5/List of primers used for cloning, genome editing and PCR.
DOI: 10.6084/m9.figshare.14562743
title: Additional file 5 of HDAC4 degradation during senescence unleashes an epigenetic program driven by AP-1/p300 at selected enhancers and super-enhancers

description: Additional file 5: Supplementary Table S4/List of the 382 SES identified by ROSE algorithm in SK-LMS-1 HDAC4 depleted cells.
DOI: 10.6084/m9.figshare.14562740
title: Additional file 4 of HDAC4 degradation during senescence unleashes an epigenetic program driven by AP-1/p300 at selected enhancers and super-enhancers

description: Additional file 4: Supplementary Table S3/Acetylation ratio calculated between the HDAC4 KO and HDAC4 WT samples, centered on the genomic loci shown in Fig. 4g.
DOI: 10.6084/m9.figshare.14390720
title: MiCM workshop - polygenic risk scores

description: <b>Polygenic risk scores - Theory, Development and Evaluation</b><b><br></b>Please download all materials and store in one folder. Please also ensure plink and PRSice-2 are unzipped and executable.<br>Simulation of data example - simulation.RPart I - Part_I.codes.txtPart II - Part_II.codes.txt<br>Part III - Part_III.codes.txt<br><br>Additional methods - Part_II.LDPred.codes.txt, Part_II.SBayesR.codes,txt, and Part_II.lassosum.codes.txt
DOI: 10.25345/c52r7c
title: MassIVE MSV000087395 - O-mannosyl glycan modifications of alpha-dystroglycan
title: LC-MS/MS results demonstrate the GroP-terminated core M3 structures on recombinant alpha-dystroglycan.
DOI: 10.6084/m9.figshare.14538537
title: Zhuang & Calkin et al., Loss of the Long Non-coding RNA OIP5-AS1 Exacerbates Heart Failure in a Sex-Specific Manner; RNA-seq Data

description: RNA-seq data from left ventricle of C57BL/6J WT and OIP5-AS1 KO male and female mice that have undergone transverse aortic constriction (TAC) to induce heart failure.<br>
DOI: 10.6084/m9.figshare.14538537.v1
title: Zhuang & Calkin et al., Loss of the Long Non-coding RNA OIP5-AS1 Exacerbates Heart Failure in a Sex-Specific Manner; RNA-seq Data

description: RNA-seq data from left ventricle of C57BL/6J WT and OIP5-AS1 KO male and female mice that have undergone transcending aortic constriction (TAC) to induce heart failure.<br>
DOI: 10.5519/qd.e24341uy
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (18 records)