cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.12805005
title: Antwerp Street Stories: ±90,000 machine-readable pages of handwritten local police reports (1876-1945)

description: This repository holds all scripts and data referenced in the paper:

Lith Lefranc, Mike Kestemont & Ilja Van Damme: “Antwerp Street Stories: ±90,000 machine-readable pages of handwritten local police reports (1876-1945)”

This README describes all assets in this repository, which are made available under a Creative Commons license: CC-BY-NC-SA. This open-source license is meant to encourage the scholarly reuse of these resources. If you reuse the data, we kindly request that you provide a proper citation to the paper mentioned above.

Assets

/scripts





/scripts/requirements.txt: all code was applied and tested using Python (version 3.11.10)




/scripts/postprocess-xml.ipynb: scripts used to postprocess the raw xml files after layout analysis and HTR of the manuscript images




/scripts/enrich-metadata.ipynb: scripts used to analyze the postprocessed xml files and enrich the metadata of each incident book




/scripts/visualize-metadata.ipynb: scripts used to make visualizations of the analyses of the metadata



/data





/data/xml-raw: folder with the raw xml files after layout analysis and HTR of the manuscript images (organized by incident book)




/data/xml-raw: folder with the post-processed xml files created by the scripts in /scripts/postprocess-xml.ipynb (organized by incident book)




/data/IB-metadata: folder with csv files of the original and enriched metadata of the incident books




/data/visualizations: folder with png images created by the scripts in /scripts/visualize-metadata.ipynb
DOI: 10.5281/zenodo.12805004
title: Antwerp Street Stories: ±90,000 machine-readable pages of handwritten local police reports (1876-1945)

description: This repository holds all scripts and data referenced in the paper:

Lith Lefranc, Mike Kestemont & Ilja Van Damme: “Antwerp Street Stories: ±90,000 machine-readable pages of handwritten local police reports (1876-1945)”

This README describes all assets in this repository, which are made available under a Creative Commons license: CC-BY-NC-SA. This open-source license is meant to encourage the scholarly reuse of these resources. If you reuse the data, we kindly request that you provide a proper citation to the paper mentioned above.

Assets

/scripts





/scripts/requirements.txt: all code was applied and tested using Python (version 3.11.10)




/scripts/postprocess-xml.ipynb: scripts used to postprocess the raw xml files after layout analysis and HTR of the manuscript images




/scripts/enrich-metadata.ipynb: scripts used to analyze the postprocessed xml files and enrich the metadata of each incident book




/scripts/visualize-metadata.ipynb: scripts used to make visualizations of the analyses of the metadata



/data





/data/xml-raw: folder with the raw xml files after layout analysis and HTR of the manuscript images (organized by incident book)




/data/xml-raw: folder with the post-processed xml files created by the scripts in /scripts/postprocess-xml.ipynb (organized by incident book)




/data/IB-metadata: folder with csv files of the original and enriched metadata of the incident books




/data/visualizations: folder with png images created by the scripts in /scripts/visualize-metadata.ipynb
DOI: 10.15468/dl.gx2kjj
title: Occurrence Download

description: A dataset containing 2164 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sparus aurata Linnaeus, 1758",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 2164 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043263-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14531670
title: Impact de la taille des nanoparticules d'or au sein des Nanohybrides Au-ZIF-8 : synthèse et caractérisation

description: Les réseaux organométalliques (MOF) suscitent un intérêt considérable en chimie en raison de leur porosité élevée et de leur grande surface spécifique, offrant un large éventail d’applications, notamment dans le stockage et l’administration de médicaments. Lorsqu’ils sont combinés à des nanomatériaux, il est possible de former des structures hybrides présentant des propriétés chimiques améliorées.
DOI: 10.5281/zenodo.14531671
title: Impact de la taille des nanoparticules d'or au sein des Nanohybrides Au-ZIF-8 : synthèse et caractérisation

description: Les réseaux organométalliques (MOF) suscitent un intérêt considérable en chimie en raison de leur porosité élevée et de leur grande surface spécifique, offrant un large éventail d’applications, notamment dans le stockage et l’administration de médicaments. Lorsqu’ils sont combinés à des nanomatériaux, il est possible de former des structures hybrides présentant des propriétés chimiques améliorées.
DOI: 10.15468/dl.rayks9
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sphoeroides dorsalis Longley, 1934",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 83 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043264-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14530201
title: Target and non-target analysis of PMTs in urine samples. Method optimization and validation

description: This is the collection of the metadata associated with target and non-target analysis of permanent, mobile and toxic compound (PMTs) optimization and validation in urine samples obtained within the AQUASOMIC project and related to the following publications:



Sample preparation for suspect screening of persistent, mobile and toxic substances and their phase II metabolites in human urine by mixed-mode liquid chromatography (http://hdl.handle.net/10810/66709; https://doi.org/10.1016/j.talanta.2024.125698)

Dilute-and-shoot coupled to mixed mode liquid chromatography-tandem mass spectrometry for the analysis of persistent and mobile organic compounds in human urine (http://hdl.handle.net/10810/63387; https://doi.org/10.1007/s00216-022-04250-w)


Description of tables included in the metadata - datasheet



Table Z1 includes information and physic-chemical properties of selected permanent, mobile and toxic compounds analyzed by low (MS/MS) and high (HRMS) resolution mass spectrometry

Table Z2 includes chromatographic conditions (mobile phase, gradient elution), ESI ionization source parameters and dynamic MRM method (retention time (RT), polarity and transitions) of the selected PMTs at pH=3 and pH=7 using the Acclaim Trinity P1 and P2 columns

Table Z3 includes re-dissolving recoveries at different injection solvents and chromatographic peak goodness based on FWHM values in MMLC-QqQ

Table Z4 includes sample preparation absolute recovery to determine PMTs in urine samples measured by MMLC-QqQ

Table Z5 includes instrumental and procedural figures of merit for D&S-MMLC-QqQ using Acclaim Trinity P1 column

Table Z6 includes instrumental and procedural figures of merit for D&S-MMLC-QqQ using Acclaim Trinity P2 column

Table Z7 includes HESI and Full MS-dd MS2 mode parameters used in the MMLC-qOrbitrap system for both trimodal columns

Table Z8 includes suspect screening approach in spiked synthetic urine using different sample treatment approaches (SPE-LLE and DS) measured by LC-qOrbitrap and using Acclaim Trinity P1 and P2 columns

Table Z9 includes suspect screening of PMOCs in the pooled human urine sample using both sample preparation approaches (SPE-SALLE and DS) measured by LC-qOrbitrap and using Acclaim Trinity P1 and P2 columns and using using suspect lists included in files 2, 3, 6 and 7 published in https://doi.org/10.5281/zenodo.14527541
DOI: 10.5281/zenodo.14530202
title: Target and non-target analysis of PMTs in urine samples. Method optimization and validation

description: This is the collection of the metadata associated with target and non-target analysis of permanent, mobile and toxic compound (PMTs) optimization and validation in urine samples obtained within the AQUASOMIC project and related to the following publications:



Sample preparation for suspect screening of persistent, mobile and toxic substances and their phase II metabolites in human urine by mixed-mode liquid chromatography (http://hdl.handle.net/10810/66709; https://doi.org/10.1016/j.talanta.2024.125698)

Dilute-and-shoot coupled to mixed mode liquid chromatography-tandem mass spectrometry for the analysis of persistent and mobile organic compounds in human urine (http://hdl.handle.net/10810/63387; https://doi.org/10.1007/s00216-022-04250-w)


Description of tables included in the metadata - datasheet



Table Z1 includes information and physic-chemical properties of selected permanent, mobile and toxic compounds analyzed by low (MS/MS) and high (HRMS) resolution mass spectrometry

Table Z2 includes chromatographic conditions (mobile phase, gradient elution), ESI ionization source parameters and dynamic MRM method (retention time (RT), polarity and transitions) of the selected PMTs at pH=3 and pH=7 using the Acclaim Trinity P1 and P2 columns

Table Z3 includes re-dissolving recoveries at different injection solvents and chromatographic peak goodness based on FWHM values in MMLC-QqQ

Table Z4 includes sample preparation absolute recovery to determine PMTs in urine samples measured by MMLC-QqQ

Table Z5 includes instrumental and procedural figures of merit for D&S-MMLC-QqQ using Acclaim Trinity P1 column

Table Z6 includes instrumental and procedural figures of merit for D&S-MMLC-QqQ using Acclaim Trinity P2 column

Table Z7 includes HESI and Full MS-dd MS2 mode parameters used in the MMLC-qOrbitrap system for both trimodal columns

Table Z8 includes suspect screening approach in spiked synthetic urine using different sample treatment approaches (SPE-LLE and DS) measured by LC-qOrbitrap and using Acclaim Trinity P1 and P2 columns

Table Z9 includes suspect screening of PMOCs in the pooled human urine sample using both sample preparation approaches (SPE-SALLE and DS) measured by LC-qOrbitrap and using Acclaim Trinity P1 and P2 columns and using using suspect lists included in files 2, 3, 6 and 7 published in https://doi.org/10.5281/zenodo.14527541
DOI: 10.5281/zenodo.14527540
title: Masslits for the suspect and non-target analysis of xenobiotics in biofluids

description: This is the collection associated with the suspect and non-target analysis suspects lists associated with biofluids.



File 1_Xenobiotics.sdf contains the combined (n=7116 suspects) suspect list of xenobiotics created using the S5, S7, S11, S13, S20, S22, S23, S24, S28, S34, S36, S47, S54, S59, S66, S78, S87 lists from NORMAN network (https://www.norman-network.net/) downloaded in January 2022.

File 2_Urine_endogenous.sdf file contains the endogenous suspect list (n=774 suspects) obtained from Human Metabolome Database (https://hmdb.ca/) in January 2022.

File 3_PMT.sdf file contains the combined (n=1466 suspects) suspect list of permanent mobile and toxic compounds created using the S5, S36, S63, S64, and S82 lists from NORMAN network (https://www.norman-network.net/) downloaded in January 2023.

File 4_PFAS.sdf file contains the curated (n=3202 suspects) suspect list of per- and polyfluorinated alkyl substances created using the S25 list from NORMAN network (https://www.norman-network.net/) downloaded in September 2022.

File 5_Xenobiotics_Phase II.sdf (n=7700 suspects), File 6_PMT_Phase II.sdf (n=1568 suspects), and File 7_Urine_endogenous_Phase II.sdf (n=1780 suspects) contain the phase II metabolite suspect lists obtained using Biotransformer 3.0 (https://biotransformer.ca/) after the application of Phase II transformation.
DOI: 10.5281/zenodo.14527541
title: Masslits for the suspect and non-target analysis of xenobiotics in biofluids

description: This is the collection associated with the suspect and non-target analysis suspects lists associated with biofluids.



File 1_Xenobiotics.sdf contains the combined (n=7116 suspects) suspect list of xenobiotics created using the S5, S7, S11, S13, S20, S22, S23, S24, S28, S34, S36, S47, S54, S59, S66, S78, S87 lists from NORMAN network (https://www.norman-network.net/) downloaded in January 2022.

File 2_Urine_endogenous.sdf file contains the endogenous suspect list (n=774 suspects) obtained from Human Metabolome Database (https://hmdb.ca/) in January 2022.

File 3_PMT.sdf file contains the combined (n=1466 suspects) suspect list of permanent mobile and toxic compounds created using the S5, S36, S63, S64, and S82 lists from NORMAN network (https://www.norman-network.net/) downloaded in January 2023.

File 4_PFAS.sdf file contains the curated (n=3202 suspects) suspect list of per- and polyfluorinated alkyl substances created using the S25 list from NORMAN network (https://www.norman-network.net/) downloaded in September 2022.

File 5_Xenobiotics_Phase II.sdf (n=7700 suspects), File 6_PMT_Phase II.sdf (n=1568 suspects), and File 7_Urine_endogenous_Phase II.sdf (n=1780 suspects) contain the phase II metabolite suspect lists obtained using Biotransformer 3.0 (https://biotransformer.ca/) after the application of Phase II transformation.
DOI: 10.15468/dl.bq64cw
title: Occurrence Download

description: A dataset containing 673 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sphoeroides maculatus (Bloch & Schneider, 1801)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 673 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043268-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14448343
title: Data for 'A global investigation reveals limited evidence of impacts of bat exploitation of anthropogenic structures'

description: Database as tab-delimited (.csv) associated with:

Sippola et al.  ‘A global investigation reveals limited evidence of impacts of bat exploitation of anthropogenic structures’.

Please refer to the main publication for a detailed description. An explanation of the database is available in the Database Guidance file uploaded alongside the database.
DOI: 10.5281/zenodo.14448344
title: Data for 'A global investigation reveals limited evidence of impacts of bat exploitation of anthropogenic structures'

description: Database as tab-delimited (.csv) associated with:

Sippola et al.  ‘A global investigation reveals limited evidence of impacts of bat exploitation of anthropogenic structures’.

Please refer to the main publication for a detailed description. An explanation of the database is available in the Database Guidance file uploaded alongside the database.
DOI: 10.15468/dl.qb3fkj
title: Occurrence Download

description: A dataset containing 467 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sphoeroides nephelus (Goode & Bean, 1882)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 467 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043270-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14528191
title: Reference dataset for semi-urban and rural Norwegian low voltage distribution system

description: This reference dataset describes four representative Norwegian radial, low voltage distribution systems operated at 230 V. The dataset was developed in the Norwegian research center CINELDI.

 

The dataset is based on real Norwegian distribution systems but has been anonymized. There are four folders for the four different grids, "39_semi_urban_grid_reference_grid", "56_semi_urban_grid_reference_grid", "50_rural_grid_reference_grid" and "80_rural_grid_reference_grid". All of the folders contain seven CSV files: four grid data files and three load data files.

 

Grid data files: "mpc_branch.csv" and "mpc_bus.csv" contain grid data in the MATPOWER format, "mpc_branch_extra.csv" provides additional information about the branches in the grid, and "mpc_base_mva.csv" gives the base power value of the grid (needed since the values in the other grid data files are given in per unit value).

Load data files: "p_load.csv" and "q_load.csv" contain hourly active and reactive power, respectively, for all the load buses in the grid, and "load_bus_extra.csv" provides additional information about the load buses in the grid.
DOI: 10.5281/zenodo.14528192
title: Reference dataset for semi-urban and rural Norwegian low voltage distribution system

description: This reference dataset describes four representative Norwegian radial, low voltage distribution systems operated at 230 V. The dataset was developed in the Norwegian research center CINELDI.

 

The dataset is based on real Norwegian distribution systems but has been anonymized. There are four folders for the four different grids, "39_semi_urban_grid_reference_grid", "56_semi_urban_grid_reference_grid", "50_rural_grid_reference_grid" and "80_rural_grid_reference_grid". All of the folders contain seven CSV files: four grid data files and three load data files.

 

Grid data files: "mpc_branch.csv" and "mpc_bus.csv" contain grid data in the MATPOWER format, "mpc_branch_extra.csv" provides additional information about the branches in the grid, and "mpc_base_mva.csv" gives the base power value of the grid (needed since the values in the other grid data files are given in per unit value).

Load data files: "p_load.csv" and "q_load.csv" contain hourly active and reactive power, respectively, for all the load buses in the grid, and "load_bus_extra.csv" provides additional information about the load buses in the grid.
DOI: 10.15468/dl.db7sc4
title: Occurrence Download

description: A dataset containing 360 species occurrences available in GBIF matching the query:
{
 "and" : [
 "KingdomKey is one of (Plantae)",
 "HasCoordinate is one of (true)",
 "HasGeospatialIssue is one of (false)",
 "Geometry MULTIPOLYGON (((89.77066 29.49181, 89.75638 29.493, 89.7449 29.50363, 89.72463 29.4924, 89.7243 29.48178, 89.71339 29.46392, 89.71224 29.45582, 89.70231 29.44721, 89.69821 29.43529, 89.67203 29.40652, 89.66891 29.3851, 89.65406 29.36415, 89.66095 29.34913, 89.66858 29.35111, 89.6781 29.35922, 89.68844 29.35687, 89.6941 29.34673, 89.6827 29.34277, 89.68212 29.33383, 89.66079 29.30729, 89.6607 29.29189, 89.65283 29.26653, 89.65627 29.24283, 89.65283 29.2277, 89.64634 29.217, 89.65947 29.2051, 89.67269 29.18586, 89.68106 29.18415, 89.70346 29.18886, 89.71002 29.18692, 89.70518 29.17003, 89.71544 29.15789, 89.72397 29.14146, 89.75893 29.14824, 89.77296 29.1409, 89.77682 29.1289, 89.7705 29.11223, 89.77772 29.09532, 89.77829 29.07759, 89.7856 29.07634, 89.80669 29.08355, 89.82187 29.07362, 89.824 29.06438, 89.81982 29.02935, 89.82876 29.01858, 89.82794 29.00504, 89.83401 28.99898, 89.86429 28.99746, 89.87972 29.00129, 89.90893 29.02191, 89.91869 29.02519, 89.94052 29.02579, 89.96243 29.03027, 89.97097 29.03503, 89.99419 29.03642, 90.00707 29.03185, 90.02233 29.03956, 90.02988 29.04964, 90.05565 29.06502, 90.06722 29.06622, 90.0943 29.06183, 90.10702 29.04881, 90.11128 29.01031, 90.11752 29.00291, 90.13779 29.00587, 90.16298 29.00226, 90.17931 28.98997, 90.18916 28.98784, 90.19498 28.97679, 90.20565 28.97665, 90.20664 28.99034, 90.21476 29.00457, 90.20664 29.01539, 90.20557 29.02445, 90.22379 29.03097, 90.23125 29.04409, 90.24635 29.05403, 90.24898 29.06257, 90.24561 29.08179, 90.22838 29.10576, 90.22576 29.11717, 90.23199 29.14603, 90.23831 29.16292, 90.24512 29.17063, 90.26687 29.17317, 90.29747 29.20487, 90.30002 29.22443, 90.30937 29.24712, 90.30412 29.25731, 90.33161 29.26921, 90.33834 29.27465, 90.33842 29.29005, 90.34293 29.30392, 90.34819 29.30821, 90.31306 29.31521, 90.29665 29.32282, 90.28114 29.32457, 90.26276 29.33153, 90.22764 29.32821, 90.20122 29.34401, 90.17472 29.34249, 90.15789 29.35033, 90.14025 29.346, 90.10677 29.34595, 90.07986 29.34936, 90.05442 29.34019, 90.0216 29.34056, 90.00633 29.33549, 89.99657 29.33895, 89.97909 29.33655, 89.94471 29.33595, 89.92173 29.34139, 89.90228 29.35116, 89.89309 29.36484, 89.86544 29.38165, 89.8542 29.38211, 89.83934 29.39791, 89.80422 29.40813, 89.78912 29.4224, 89.79282 29.43815, 89.78986 29.46852, 89.7723 29.48191, 89.77066 29.49181)))"
 ]
}

 The dataset includes 360 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043272-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3yw5fw
title: Occurrence Download

description: A dataset containing 1473 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sphoeroides pachygaster (Müller & Troschel, 1848)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1473 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043273-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rm8t8c
title: Occurrence Download

description: A dataset containing 229 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Climacoptera lanata (Pall.) Botsch."
 ]
}

 The dataset includes 229 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043274-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.