cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13012/b2idb-9099305_v1
title: Crossref data for Assessing the agreement in retraction indexing across 4 multidisciplinary sources: Crossref, Retraction Watch, Scopus, and Web of Science

description: Tab-separated value (TSV) file.
14745 data rows. Each data row represents publication metadata as retrieved from Crossref (http://crossref.org) 2023-04-05 when searching for retracted publications. 

Each row has the following columns:

Index - Our index, starting with 0.
DOI - Digital Object Identifier (DOI) for the publication
Year - Publication year associated with the DOI.
URL - Web location associated with the DOI.
Title - Title associated with the DOI. May be blank.
Author - Author(s) associated with the DOI.
Journal - Publication venue (journal, conference, ...) associated with the DOI
RetractionYear - Retraction Year associated with the DOI. May be blank.
Category - One or more categories associated with the DOI. May be blank.

Our search was via the Crossref REST API and searched for:
Update_type=(
'retraction', 
'Retraction', 
'retracion', 
'retration', 
'partial_retraction', 
'withdrawal','removal')
DOI: 10.5065/d6hm575t
title: Cayenne Meteo-10 Satellite Cloud Products Data. Version 1.0

description: This dataset contains NASA Langley Satellite Cloud products from the High Altitude Ice Crystals - High Ice Water Content (HAIC-HIWC) project that took place in Cayenne, French Guiana. These data are derived from the Meteosat-10 satellite and are pixel-level cloud products. NASA-Langley cloud and radiation products are produced using the VISST (Visible Infrared Solar-infrared Split-Window Technique), SIST (Solar-infrared Infrared Split-Window Technique) and SINT (Solar-infrared Infrared Near-Infrared Technique). The data files are in netCDF format and are grouped into .tar files by day.
DOI: 10.13140/rg.2.2.25782.77125
title: Periodontal pathologies.pdf
DOI: 10.13140/rg.2.2.19071.88480
title: Dental Caries and Sequale.pdf
DOI: 10.13140/rg.2.2.32493.65761
title: Developmental cysts.pdf
DOI: 10.5065/d6cv4ggj
title: MTSAT Satellite Cloud Products Data. Version 1.0

description: This dataset contains NASA Langley Satellite Cloud products from the High Altitude Ice Crystals - High Ice Water Content (HAIC-HIWC) project that took place in Darwin, Australia. These data are derived from the MTSAT-2 satellite and are pixel-level cloud products. NASA-Langley cloud and radiation products are produced using the VISST (Visible Infrared Solar-infrared Split-Window Technique), SIST (Solar-infrared Infrared Split-Window Technique) and SINT (Solar-infrared Infrared Near-Infrared Technique). The data files are in netCDF format and are grouped into .tar files by day.
DOI: 10.5065/d6833qsk
title: MTSAT Rapid Scan Satellite Cloud Products Data. Version 2.0

description: This dataset contains NASA Langley Satellite Cloud products from the High Altitude Ice Crystals - High Ice Water Content (HAIC-HIWC) project that took place in Darwin, Australia. These data are derived from the MTSAT-1R satellite and are pixel-level cloud products. NASA-Langley cloud and radiation products are produced using the VISST (Visible Infrared Solar-infrared Split-Window Technique), SIST (Solar-infrared Infrared Split-Window Technique) and SINT (Solar-infrared Infrared Near-Infrared Technique). The data files are in netCDF format and are grouped into .tar files by day. Latest Update: * Added additional satellite data files for February 3, 4, 5, 6, and 10, 2014.
DOI: 10.5065/d64f1pgk
title: MITTS: Flight Tracks - Google Earth .kml files. Version 1.0

description: KML is a file format used to display geographic data in an Earth browser such as Google Earth. This dataset contains KML files used to display the NSF/NCAR HIAPER GV flight track in real-time during the MITTS project.
DOI: 10.13140/rg.2.2.31969.36964
title: Cyber Risk Is Now a Boardroom Issue: Why Qantas' Decision Sets a Global Precedent
DOI: 10.5065/d60p0xs9
title: MITTS: Low Rate (LRT - 1 sps) Navigation, State Parameter, and Microphysics Flight-Level Data. Version 1.0

description: This data set includes airborne measurements obtained from the NSF/NCAR HIAPER GV aircraft (Tail Number N677F) during the MITTS project. This dataset contains low rate navigation, state parameter, and microphysics flight-level data in netCDF format.
DOI: 10.15468/dl.kp6xe3
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plutella xylostella",
 "Country is United Arab Emirates",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036540-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5065/d6vx0f8z
title: ARISTO2016: Flight Tracks - Google Earth .kml files. Version 1.0

description: KML is a file format used to display geographic data in an Earth browser such as Google Earth. This dataset contains KML files used to display the NSF/NCAR C-130 flight track in real-time during the ARISTO2016 project.
DOI: 10.5065/d6r49phj
title: ARISTO2016: Low Rate (LRT - 1 sps) Navigation, State Parameter, and Microphysics Flight-Level Data. Version 1.1

description: This data set includes airborne measurements obtained from the NSF/NCAR C-130 aircraft (Tail Number N130AR) during the ARISTO2016 project. This dataset contains low rate navigation, state parameter, and microphysics flight-level data in netCDF format.
DOI: 10.13140/rg.2.2.12675.57120
title: Accounting System Design
DOI: 10.5065/d6mc8xrc
title: ARISTO2017: Flight Tracks - Google Earth .kml files. Version 1.0

description: KML is a file format used to display geographic data in an Earth browser such as Google Earth. This dataset contains KML files used to display the NSF/NCAR HIAPER GV flight track in real-time during the ARISTO2017 project.
DOI: 10.13140/rg.2.2.26097.34401
title: S1_Dedenko_Directed_Panspermia_Justification of_the_Hypothesis_ru_v1.0.pdf
DOI: 10.13140/rg.2.2.19386.45767
title: S1_Dedenko_The_Crisis_of_the_Randomness_Paradigm_ru_v1.0.pdf
DOI: 10.5065/d6tx3d4k
title: CU Disdrometer Data at Snow Bank Site. Version 1.0

description: This dataset contains disdrometer data from the Snow Bank Mountain Site for the Seeded and Natural Orographic Wintertime clouds - the Idaho Experiment (SNOWIE). The data are in readable ASCII text format, with daily files named for the integer day of the year they were collected. Please refer to the readme for further information.
DOI: 10.13140/rg.2.2.22322.47040
title: Más allá de la paz neoliberal. Colombia
DOI: 10.5065/d68051cn
title: North Redfield Snow Study Station Data. Version 1.0

description: This dataset contains North Redfield Snow Study Station data and images. The North Redfield Snow Study Station provided stationary, in situ measurements of meteorological variables (temperature, relative humidity, wind speed and direction, precipitation) and automated snow depth measurements (total snow depth and interval snow depth). An automated camera also took photos of the interval snow depth board. These data were collected from 5 December 2013 through 29 January 2014 as part of the Ontario Winter Lake-effect Systems (OWLeS) project.
DOI: 10.5065/d6zg6r0t
title: IDEAL: National Weather Service High Resolution Radiosonde Data. Version 1.0

description: The National Weather Service (NWS) routinely releases radiosondes at 00 and 12 UTC with occasional special releases at sites throughout the United States. This data set includes the quality controlled NWS soundings released at nine sites around Salt Lake City, Utah during the IDEAL (Instabilities, Dynamics and Energetics accompanying Atmospheric Layering) project's field phase (15 October to 15 November 2017). A total of 585 quality-controlled, high vertical resolution (1-second) soundings are contained in the final IDEAL NWS radiosonde data set.
DOI: 10.5281/zenodo.17106548
title: Tripartite synapse and perisynaptic astrocytic process meshes

description: The ultrastructural properties of the endoplasmic reticulum govern microdomain signaling in perisynaptic astrocytic processes

Dataset DOI: 10.5281/zenodo.17106549

Description of the data and file structure

This dataset contains the 28 fully reconstructed tripartite synapse meshes and the perisynaptic astrocytic process (PAP) meshes from the following study:

Denizot, A.; Veloz Castillo, M. F.; Puchenkov, P.; Cali, C.; De Schutter, E. (2025). The ultrastructural properties of the endoplasmic reticulum govern microdomain signaling in perisynaptic astrocytic processes. DOI: 10.1101/2022.02.28.482292

The data are organized into 2 main folders:



 "TripartiteSynapseMeshes", which contains the 28 fully reconstructed tripartite synapse meshes of the study (Figures 1 and 2). Each contains 4 elements: the presynaptic bouton, the postsynaptic dendritic spine head, the post-synaptic density, and the perisynaptic astrocytic process.

"PAPMeshes", which contains 3D meshes of perisynaptic astrocytic processes and is subvidided into 2 folders:



 "EMPAPMeshes" contains the PAP meshes extracted from electron microscopy presented in Figure 3 of the manuscript.

 "RealisticPAPMeshes" contains realistic PAP meshes generated based on PAP geometries reconstructed from volume electron microscopy. These meshes are presented in Figures 4 and 5 of the manuscript.




More details can be found in the README files of each folder.

License: Creative Commons Attribution 4.0 International

Please cite this repository and the original paper if using the dataset in your research.

 

Code/software

The code used in this study is available at https://github.com/adenizot/PAP-ER

Files are organized within different folders, as follows:



 'Ca2+Model' contains the simulation code used in Fig. 3, 4 and 5. The code was written for simulations using the STochastic Engine for Pathway Simulations (STEPS, http://steps.sourceforge.net/STEPS/default.php) 3.5.0

 'GeometryAnalysis' contains the analysis code used to measure PM-PSD, ER-PSD or ER-PM distances.

'PAPMeshGeneration' contains the algorithm that allows the generation of realistic PAP meshes with various ER distributions in the PAP, with constant ER and PAP shape.


The codes in 'GeometryAnalysis' and 'PAPMeshGeneration' were implemented for Blender 4.3.2.

Access information

Data was derived from the following source:

Calì, C. et al. Three-dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues. J. Comp. Neurol. 524, 23–38 (2016), DOI: 10.1002/cne.23852

We thank Graham Knott for kindly sharing the original EM dataset.

Contact

audrey.denizot@inria.fr
DOI: 10.5281/zenodo.17106549
title: Tripartite synapse and perisynaptic astrocytic process meshes

description: The ultrastructural properties of the endoplasmic reticulum govern microdomain signaling in perisynaptic astrocytic processes

Dataset DOI: 10.5281/zenodo.17106549

Description of the data and file structure

This dataset contains the 28 fully reconstructed tripartite synapse meshes and the perisynaptic astrocytic process (PAP) meshes from the following study:

Denizot, A.; Veloz Castillo, M. F.; Puchenkov, P.; Cali, C.; De Schutter, E. (2025). The ultrastructural properties of the endoplasmic reticulum govern microdomain signaling in perisynaptic astrocytic processes. DOI: 10.1101/2022.02.28.482292

The data are organized into 2 main folders:



 "TripartiteSynapseMeshes", which contains the 28 fully reconstructed tripartite synapse meshes of the study (Figures 1 and 2). Each contains 4 elements: the presynaptic bouton, the postsynaptic dendritic spine head, the post-synaptic density, and the perisynaptic astrocytic process.

"PAPMeshes", which contains 3D meshes of perisynaptic astrocytic processes and is subvidided into 2 folders:



 "EMPAPMeshes" contains the PAP meshes extracted from electron microscopy presented in Figure 3 of the manuscript.

 "RealisticPAPMeshes" contains realistic PAP meshes generated based on PAP geometries reconstructed from volume electron microscopy. These meshes are presented in Figures 4 and 5 of the manuscript.




More details can be found in the README files of each folder.

License: Creative Commons Attribution 4.0 International

Please cite this repository and the original paper if using the dataset in your research.

 

Code/software

The code used in this study is available at https://github.com/adenizot/PAP-ER

Files are organized within different folders, as follows:



 'Ca2+Model' contains the simulation code used in Fig. 3, 4 and 5. The code was written for simulations using the STochastic Engine for Pathway Simulations (STEPS, http://steps.sourceforge.net/STEPS/default.php) 3.5.0

 'GeometryAnalysis' contains the analysis code used to measure PM-PSD, ER-PSD or ER-PM distances.

'PAPMeshGeneration' contains the algorithm that allows the generation of realistic PAP meshes with various ER distributions in the PAP, with constant ER and PAP shape.


The codes in 'GeometryAnalysis' and 'PAPMeshGeneration' were implemented for Blender 4.3.2.

Access information

Data was derived from the following source:

Calì, C. et al. Three-dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues. J. Comp. Neurol. 524, 23–38 (2016), DOI: 10.1002/cne.23852

We thank Graham Knott for kindly sharing the original EM dataset.

Contact

audrey.denizot@inria.fr
DOI: 10.13140/rg.2.2.13724.14725
title: Philfo Grace (Gurparsad) Particle, Neutrino Emissions in Human Body, Earth Core and Banana with Reversible Higgs, Neutrino and Nanoparticle Sciences
DOI: 10.5065/d6p26wwh
title: OWLeS: University of Wyoming North Redfield Hotplate Processed and Time Series Data. Version 1.0

description: This dataset contains the University of Wyoming Hotplate processed and time series data collected at the North Redfield site from 26 November 2013 through 29 January 2014 during the Ontario Winter Lake-effect Systems (OWLeS) project. Hotplate raw data were processed, the liquid-equivalent precipitation rate was derived, and accumulated over one hour interval. The one-hour accumulations were archived with averages of ambient temperature, wind speed, downwelling shortwave radiation and net longwave radiation.
DOI: 10.5065/d6cj8c7k
title: SNOWIE: Idaho Power Company Lowman Sounding Data. Version 1.0

description: This dataset contains sounding data from the Idaho Power Company at the Lowman site for Seeded and Natural Orographic Wintertime clouds - the Idaho Experiment (SNOWIE). Idaho Power utilizes Lockheed Martin LMS6 Radiosondes and Ground Systems. The LMS6 Radiosondes use GPS data to track the radiosonde’s position and height as well as calculating wind speed and direction. Other meteorological data that are collected is pressure, temperature, and humidity. These are calculated from a suite of onboard sensors that include a chip thermistor temperature sensor and a LMU6 humidity sensor. This data is transmitted to the LMS6 Ground System at a frequency between 400.250 and 405.875 MHz. The data are in ESC format. Refer to the readme for further information.
DOI: 10.5065/d67s7mj9
title: SNOWIE: Idaho Power Company Crouch Sounding Data. Version 1.0

description: This dataset contains sounding data for the ice water content from the isokinetic probe (IKP2) at the Crouch site for Seeded and Natural Orographic Wintertime clouds - the Idaho Experiment (SNOWIE). Idaho Power utilizes Lockheed Martin LMS6 Radiosondes and Ground Systems. The LMS6 Radiosondes use GPS data to track the radiosonde’s position and height as well as calculating wind speed and direction. Other meteorological data that are collected is pressure, temperature, and humidity. These are calculated from a suite of onboard sensors that include a chip thermistor temperature sensor and a LMU6 humidity sensor. This data is transmitted to the LMS6 Ground System at a frequency between 400.250 and 405.875 MHz. The data are in ESC format. Refer to the readme for further information.
DOI: 10.13140/rg.2.2.17499.02086
title: Philfo Grace Particle 5D Bio Model of Human Body Neutrino Emissions is Like Live Bio CERN and Other Large Accelerator Streams
DOI: 10.5065/d6zc81nc
title: GTS Mandatory/Significant Level Sounding 2016 Hurricane Matthew Data. Version 1.0

description: National weather agencies around the world routinely release radiosondes at 00 and/or 12 UTC with occasional special releases. This data set includes the quality controlled Global Telecommunication System (GTS) soundings released at sites near tropical cyclones of interest to the Tropical Cyclone Intensity (TCI) field project. For the 2016 season, this included soundings from 28 September to 9 October 2016 from Bermuda, Wallops Island, Cape Canaveral, Nassau, Kingston, Grand Cayman, Saint Maarten, and Guadeloupe. A total of 183 quality-controlled, mandatory and significant level resolution soundings are contained in the final TCI 2016 Hurricane Matthew data set.
DOI: 10.15468/dl.ef5qfw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sorbus rupicoloides",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Material sample)"
 ]
 }
 },
 "Country is United Kingdom of Great Britain and Northern Ireland",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than or equal to 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036541-250920141307145/datasets/export for details.
DOI: 10.5065/d6tm78w6
title: ARISTO2017: High Rate (HRT - 25 sps) Navigation, State Parameter, and Microphysics Flight-Level Data. Version 1.0

description: This data set includes airborne measurements obtained from the NSF/NCAR HIAPER GV aircraft (Tail Number N677F) during the ARISTO2017 project. This dataset contains high rate navigation, state parameter, and microphysics flight-level data in netCDF format.
DOI: 10.5065/d6nv9h1h
title: NCAS Manchester Radar Wind Profiler 1290MHz Alvaiade Data. Version 1.0

description: This dataset contains the wind profile, signal-to-noise ratio, and spectral width data from the 1290 MHz radar wind profiler operated by the National Centre for Atmospheric Science (NCAS) Atmospheric Measurement Facility (AMF) and located at the Perdigao operations center in Alvaiade, Portugal during the Perdigao field project in 2017. The profiler is a Degreane Horizon 3-beam UHF radar boundary layer wind profiler operating at 1290 MHz. This dataset includes 1 minute and 15 minute wind data for both the low and high range in NetCDF format as well as browse imagery.
DOI: 10.5065/d6h70dm1
title: NCAR/EOL Quality Controlled Radiosonde Data. Version 2.0

description: This dataset contains the quality controlled radiosonde data collected by the NCAR/EOL Integrated Sounding System (ISS) that was located at the upper orange grove site in the center of the Vale do Cobrao during the Perdigao field project in 2017. This dataset includes sounding data from daily launches occurring at 00, 06, 12, and 18 local time, as well as select periods with 3-hourly launches, in EOL format. These data have been quality controlled and include a data quality report that include information on the project, the quality control techniques applied, and subsequent corrections.
DOI: 10.5065/d66q1w05
title: NASA DC-8 CU Size-Segregated Chemically Speciated Submicron Particulate Mass Data. Version 1.0

description: This data set contains NASA DC-8 CU Size-Segregated Chemically Speciated Submicron Particulate Mass Data (AMSSD) collected during the Deep Convective Clouds and Chemistry Experiment (DC3) from 14 May 2012 through 22 June 2012. This data set is in ICARTT format. Please see the header portion of the data files for details on instruments, parameters, quality assurance, quality control, contact information, and data set comments.
DOI: 10.15468/dl.jc9tdx
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xiphophorus variatus",
 "Country is Costa Rica",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036542-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ad82p
title: Occurrence Download

description: A dataset containing 297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xiphophorus variatus",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 297 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036543-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5065/d6ms3rhd
title: SNOWIE: UIUC Mobile Radiosonde Data. Version 1.0

description: The University of Illinois Urbana-Champaign (UIUC) released radiosondes from its mobile facility located at one of three spots as part of its Seeded and Natural Orographic Wintertime: The Idaho Experiment (SNOWIE) operations. This data set includes the 34 high resolution, quality controlled UIUC radiosondes released during the SNOWIE field phase (8 January to 9 March 2017).
DOI: 10.5065/d61v5cr5
title: Digital Camera Movies with data - final. Version 1.0

description: During MITTS, the NSF/NCAR HIAPER GV (Tail Number N677F) flew digital cameras for in-flight video capture. Individual photo jpeg images were captured once per second during flights. Images taken after dark have been stripped from this archive. Remaining images for each second were processed to include production data along the right side of the image and converted to Quicktime movie files. The movies are h.264 codec playable with Quicktime (Mac and Windows), xine, (linux) and mplayer (many platforms). The original images were recorded at 1 fps. The movies are set to play back at 15 fps.
DOI: 10.13140/rg.2.2.24707.98081
title: A TEXTUAL ANALYSIS OF The Last Days at Forcados High School for JAMB/UTME and POST-UTME candidates With Model Questions and Answers
DOI: 10.5065/d6rb73c1
title: Digital Camera Movies with data - final. Version 1.0

description: During ARISTO2016, the NSF/NCAR C-130 (Tail Number N130AR) flew digital cameras for in-flight video capture. Individual photo jpeg images were captured once per second during flights. Images taken after dark have been stripped from this archive. Remaining forward and downward images for each second were combined into a single image and processed to include production data along the right side of the image and converted to Quicktime movie files. The movies are h.264 codec playable with Quicktime (Mac and Windows), xine, (linux) and mplayer (many platforms). The original images are 1024x768 pixels and were recorded at 1 frame/second. The movies are set to play back at 512x384 pixels and 15 fps.
DOI: 10.5281/zenodo.17244222
title: Dataseta associated to M. Capra et al., Phy. Rev. Mater. 2025