cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4121/19923707
title: Source data for the publication: Engineered modular microphysiological models of the human airway clearance phenomena

description: This data set contains the source data of the publication: Pedersoli, L., Zhang, S., Briatico-Vangosa, F., Petrini, P., Cardinaels, R., den Toonder, J.M.J. & Peneda Pacheco, D. (2021). Engineered modular microphysiological models of the human airway clearance phenomena. Biotechnol Bioeng. 118, 3898-3913, http://dx.doi.org/10.1002/bit.27866. This work demonstrates ad hoc mucus models of physiological and pathological mucus are combined with magnetic artificial cilia to model mucociliary transport in both physiological and pathological states. The modular concept adopted in this study enables the development of mucociliary clearance models with high versatility since these can be easily modified to reproduce phenomena characteristic of healthy and diseased human airways while allowing to determine the effect of each parameter and/or structure separately on the overall mucociliary transport. The data are experimentally obtained with methods described in the publication.
DOI: 10.4121/19403864
title: Data underlying the publication Direct numerical simulation of supersonic turbulent flows over rough surfaces

description: Direct numerical simulation dataset of supersonic turbulent channel flow over rough walls. The dataset comprises both smooth and rough wall cases, spanning friction Reynolds numbers 500-1000 and bulk Mach numbers M_b = 0.3--4. <br> The dataset contains mean flow statistics of the direct numerical simulation in the reference publication: D. Modesti, S. Sathyanarayana, F. Salvadore, M. Bernardini "Direct numerical simulation of supersonic turbulent flows over rough surfaces" J. Fluid Mech. 2022
DOI: 10.4121/uuid:779b9dfd-b0ff-4531-8833-aaa9c0cf6b5a.v1
title: STORM tropical cyclone wind speed return periods

description: Datasets containing tropical cyclone maximum wind speed (in m/s) return periods, generated using the STORM datasets (see https://www.nature.com/articles/s41597-020-0381-2). Return periods were empirically calculated using Weibull's plotting formula. The STORM_FIXED_RETURN_PERIOD dataset contains maximum wind speeds for a fixed set of return periods at 10 km resolution in every ocean basin. The STORM_FIXED_WIND_SPEED dataset contains return periods for a fixed set of maximum wind speeds at 10 km resolution in every ocean basin. The STORM_CITIES dataset contains return periods at fixed wind speeds and wind speeds at fixed return periods (on two seperate sheets), occurring within 100 km from a selection of 18 coastal cities. The STORM_ISLANDS contains return periods at fixed wind speeds and wind speeds at fixed return periods (on two seperate sheets), occurring within 100 km from the capital city of an island. We included the Small Island Developing States and a set of other islands.
DOI: 10.4121/12705164.v3
title: STORM tropical cyclone wind speed return periods

description: UPDATE 30/05/2022: The data directory now also contains .tif files for the fixed wind speeds and fixed return period maps. These .tif files can be used in GIS applications in case the netcdf-files cannot be loaded in. A special thanks to Bastian Manz for writing the code to create the tif files! <br> Datasets containing tropical cyclone maximum wind speed (in m/s) return periods, generated using the STORM datasets (see https://www.nature.com/articles/s41597-020-0381-2). Return periods were empirically calculated using Weibull's plotting formula. The STORM_FIXED_RETURN_PERIOD dataset contains maximum wind speeds for a fixed set of return periods at 10 km resolution in every ocean basin. The STORM_FIXED_WIND_SPEED dataset contains return periods for a fixed set of maximum wind speeds at 10 km resolution in every ocean basin. The STORM_CITIES dataset contains return periods at fixed wind speeds and wind speeds at fixed return periods (on two seperate sheets), occurring within 100 km from a selection of 18 coastal cities. The STORM_ISLANDS contains return periods at fixed wind speeds and wind speeds at fixed return periods (on two seperate sheets), occurring within 100 km from the capital city of an island. We included the Small Island Developing States and a set of other islands.
DOI: 10.4121/14095777.v1
title: World-wide InSAR sensitivity index data set for landslide deformation tracking

description: The application of InSAR deformation measurements is feasible in a geometry sensitive to deformation. Our sensitivity index is a static analysis of the lower bound of the sensitivity of Sentinel-1 to the downslope deformation of a potential landslide. <br> The full process is explained in the linked paper (<sub>https://doi.org/10.1016/j.jag.2022.102829</sub>). Provided here is a global data set of the sensitivity index derived from the Copernicus digital elevation model (COP-DEM_GLO-30, 2019_1). <br> Individual sheets of 1°×1° are identified by their lower left corner in WGS84. Sheets are combined in archives of 10°×10°, numbered by the truncated sheet indices (e.g. S49_00_W053.tiff is in S40_W050.zip). A sheet index is provided in <sub>S_v1.gpkg</sub> and as an interactive map. No data is provided over Armenia and Azerbaijan, as these areas were not included in the public Copernicus data. The underlying Python script (<sub>20210208_CopernicusSpherical.py</sub>) is provided with the data.
DOI: 10.4121/19915483
title: Source data for the publication: Metachronal micro‑Cilia for On-Chip Integrated Pumps and Climbing Robots

description: This data set contains the source data of the publication: Zhang, S., Cui, Z., Wang, Y. & Toonder, J.M.J. den (2021). Metachronal micro-cilia for on-chip integrated pumps and climbing robots. ACS Appl. Mater. Interfaces. DOI: https://doi.org/10.1021/acsami.1c03009. This paper demonstrates a simple method to realize metachronal microscopic magnetic artificial cilia (microMAC) through control over the paramagnetic particle distribution within the microMAC based on their tendency to align with an applied magnetic field. Actuated by a 2D rotating uniform magnetic field, the metachronal microMAC enable strong microfluidic pumping and soft robot locomotion. The metachronal micro MAC induce twice the pumping efficiency and 3 times the locomotion speed of synchronously moving microMAC. The ciliated soft robots show an unprecedented slope climbing ability and they display strong cargo-carrying capacity in both dry and wet conditions. The data are experimentally obtained with methods described in the publication.
DOI: 10.4121/19915450
title: Source data for the publication: Metachronal actuation of microscopic magnetic artificial cilia generates strong microfluidic pumping

description: This data set contains the source data of the publication: Zhang, S., Cui, Z., Wang, Y. & Toonder, J.M.J. den (2020). Metachronal actuation of microscopic magnetic artificial cilia generates strong microfluidic pumping. Lab Chip 20, 3569-3581. DOI: https://dx.doi.org/10.1039/D0LC00610F. This study experimentally demonstrates that microscopic magnetic artificial cilia performing a metachronal motion can generate strong microfluidic flows, with velocities of up to 3000 um/s in water. The pumping performance of the metachronal microMAC outperforms all previously reported microscopic artificial cilia, and is competitive with that of most of the existing microfluidic pumping methods. The data are experimentally obtained with methods described in the publication.
DOI: 10.4121/19915390
title: Source data for the publication: Controlled multidirectional particle transportation by magnetic artificial cilia

description: Zhang, S., Zhang, R., Wang, Y., Onck, P.R. & Toonder, J.M.J. den (2020). Controlled multidirectional particle transportation by magnetic artificial cilia. ACS Nano 14, 8, 10313–10323. DOI: https://dx.doi.org/10.1021/acsnano.0c03801. This study experimentally and numerically demonstrates a versatile particle transportation platform consisting of arrays of magnetic artificial cilia (MAC) actuated by a rotating magnet. By performing a tilted conical motion, the MAC are capable of transporting particles on their tips, along designated directions that can be fully controlled by the externally applied magnetic field, in both liquid and air, at high resolution (particle precision), with varying speeds and for a range of particle sizes. Moreover, the underlying mechanism of the controlled particle transportation is studied in depth by combining experiments with numerical simulations. The data are obtained with methods described in the publication.
DOI: 10.4121/19915390.v1
title: Source data for the publication: Controlled multidirectional particle transportation by magnetic artificial cilia

description: Zhang, S., Zhang, R., Wang, Y., Onck, P.R. & Toonder, J.M.J. den (2020). Controlled multidirectional particle transportation by magnetic artificial cilia. ACS Nano 14, 8, 10313–10323. DOI: https://dx.doi.org/10.1021/acsnano.0c03801. This study experimentally and numerically demonstrates a versatile particle transportation platform consisting of arrays of magnetic artificial cilia (MAC) actuated by a rotating magnet. By performing a tilted conical motion, the MAC are capable of transporting particles on their tips, along designated directions that can be fully controlled by the externally applied magnetic field, in both liquid and air, at high resolution (particle precision), with varying speeds and for a range of particle sizes. Moreover, the underlying mechanism of the controlled particle transportation is studied in depth by combining experiments with numerical simulations. The data are obtained with methods described in the publication.
DOI: 10.4121/19915330
title: Source data for the publication: Anti-Biofouling and Self-Cleaning Surfaces Featured with Magnetic Artificial Cilia

description: This data set contains the source data of the publication: Zhang, S., Wang, Y., Onck, P.R. & Toonder, J.M.J. den (2020). Anti-Biofouling and Self-Cleaning Surfaces Featured with Magnetic Artificial Cilia. ACS Appl. Mater. Interfaces. DOI: https://dx.doi.org/10.1021/acsami.0c05403. In this study, it is experimentally demonstrated that surfaces partially covered with magnetic artificial cilia (MAC) have the capacity to efficiently prevent attachment and adhesion of real biofouling agents - microalgae Scenedesmus sp. Actuation of the MAC resulted in over 99% removal of the algae. The data are experimentally obtained with methods described in the publication.
DOI: 10.4121/19915330.v1
title: Source data for the publication: Anti-Biofouling and Self-Cleaning Surfaces Featured with Magnetic Artificial Cilia

description: This data set contains the source data of the publication: Zhang, S., Wang, Y., Onck, P.R. & Toonder, J.M.J. den (2020). Anti-Biofouling and Self-Cleaning Surfaces Featured with Magnetic Artificial Cilia. ACS Appl. Mater. Interfaces. DOI: https://dx.doi.org/10.1021/acsami.0c05403. In this study, it is experimentally demonstrated that surfaces partially covered with magnetic artificial cilia (MAC) have the capacity to efficiently prevent attachment and adhesion of real biofouling agents - microalgae Scenedesmus sp. Actuation of the MAC resulted in over 99% removal of the algae. The data are experimentally obtained with methods described in the publication.
DOI: 10.4121/19915324
title: Source data for the publication: Microscopic artificial cilia – a review

description: This data set contains the source data of the publication: ul Islam, T., Wang, Y., Aggarwal, I., Cui, Z., Eslami Amirabadi, H., Garg, H., Kooi, R., Venkataramanachar, B., Wang, T., Zhang, S., Onck, P. R., & den Toonder, J. M. J. (2022). Microscopic artificial cilia - a review. Lab on a Chip, 22, 1650-1679. https://doi.org/10.1039/d1lc01168e. In this paper, we provide a critical review of the progress in artificial cilia research and development as well as an evaluation of its future potential. We cover all aspects from fabrication approaches, actuation principles, artificial cilia functions – flow generation, particle transport and flow sensing – to applications. In addition to in-depth analyses of the current state of knowledge, we provide classifications of the different approaches and quantitative comparisons of the results obtained.
DOI: 10.4121/19915324.v1
title: Source data for the publication: Microscopic artificial cilia – a review

description: This data set contains the source data of the publication: ul Islam, T., Wang, Y., Aggarwal, I., Cui, Z., Eslami Amirabadi, H., Garg, H., Kooi, R., Venkataramanachar, B., Wang, T., Zhang, S., Onck, P. R., & den Toonder, J. M. J. (2022). Microscopic artificial cilia - a review. Lab on a Chip, 22, 1650-1679. https://doi.org/10.1039/d1lc01168e. In this paper, we provide a critical review of the progress in artificial cilia research and development as well as an evaluation of its future potential. We cover all aspects from fabrication approaches, actuation principles, artificial cilia functions – flow generation, particle transport and flow sensing – to applications. In addition to in-depth analyses of the current state of knowledge, we provide classifications of the different approaches and quantitative comparisons of the results obtained.
DOI: 10.4121/19915318
title: Source data for the publication: Highly motile nanoscale magnetic artificial cilia

description: This data set contains the source data of the publication: Tanveer ul Islam, Bellouard, Y. & Toonder, J.M.J. den (2021). Highly motile nanoscale magnetic artificial cilia. PNAS Vol. 118, No. 35, e2104930118. https://doi.org/10.1073/pnas.2104930118. In this work, we report a magnetic elastomer preparation process coupled with a tailored molding process for the successful fabrication of artificial cilia with submicrometer dimensions showing unprecedented deflection capabilities, enabling the design of artificial cilia with high motility and at sizes equal to those of their smallest biological counterparts. The reported work crosses the barrier of nanoscale motile cilia fabrication, paving the way for maximum control and manipulation of structures and processes at micro- and nanoscales. The data are experimentally obtained with methods described in the publication.
DOI: 10.4121/19915318.v1
title: Source data for the publication: Highly motile nanoscale magnetic artificial cilia

description: This data set contains the source data of the publication: Tanveer ul Islam, Bellouard, Y. & Toonder, J.M.J. den (2021). Highly motile nanoscale magnetic artificial cilia. PNAS Vol. 118, No. 35, e2104930118. https://doi.org/10.1073/pnas.2104930118. In this work, we report a magnetic elastomer preparation process coupled with a tailored molding process for the successful fabrication of artificial cilia with submicrometer dimensions showing unprecedented deflection capabilities, enabling the design of artificial cilia with high motility and at sizes equal to those of their smallest biological counterparts. The reported work crosses the barrier of nanoscale motile cilia fabrication, paving the way for maximum control and manipulation of structures and processes at micro- and nanoscales. The data are experimentally obtained with methods described in the publication.
DOI: 10.4121/19834699.v1
title: Source data for the publication: Self-Cleaning Surfaces Realized by Biologically Sized Magnetic Artificial Cilia

description: This data set contains the source data of the publication: Cui, Z., Zhang, S., Wang, Y., Tormey, L., Kanies, O.S., Spero, R.C., Fisher, J.K. & Toonder, J.M.J. den (2021). Self-cleaning surfaces realized by biologically sized magnetic artificial cilia. Adv. Mater. Interfaces 2021, 2102016. https://doi.org/10.1002/admi.202102016. In this study, biologically-sized magnetic artificial cilia (b-MAC) which are only 45 micrometers long and that are randomly distributed on the surface, are used to remove microparticles. The data are experimentally obtained with methods described in the publication.
DOI: 10.4121/19834699
title: Source data for the publication: Self-Cleaning Surfaces Realized by Biologically Sized Magnetic Artificial Cilia

description: This data set contains the source data of the publication: Cui, Z., Zhang, S., Wang, Y., Tormey, L., Kanies, O.S., Spero, R.C., Fisher, J.K. & Toonder, J.M.J. den (2021). Self-cleaning surfaces realized by biologically sized magnetic artificial cilia. Adv. Mater. Interfaces 2021, 2102016. https://doi.org/10.1002/admi.202102016. In this study, biologically-sized magnetic artificial cilia (b-MAC) which are only 45 micrometers long and that are randomly distributed on the surface, are used to remove microparticles. The data are experimentally obtained with methods described in the publication.
DOI: 10.4121/19766887.v1
title: Data underlying the master thesis: Quantum Control of Interacting Spins

description: This collection is an archive of the data I obtained during the Master Thesis Project, Quantum Control on Interacting Spins.<br> <br> This dataset contains numerical simulation results obtained from Monte-Carlo methods, stored in an array of files in .csv format, named by hash strings of corresponding simulation.<br> Relevant information of corresponding simulation, such like parameter settings and descriptions of tasks, are stored in the .siminfo files named with the same hash strings.<br> These files are all generated automatically by program, encoded in text format and and be opened with any text editor. <br> The scripts/notebooks for data generating and processing is given in the Simulations.zip.<br> <br>
DOI: 10.4121/19766887
title: Data underlying the master thesis: Quantum Control of Interacting Spins

description: This collection is an archive of the data I obtained during the Master Thesis Project, Quantum Control on Interacting Spins.<br> <br> This dataset contains numerical simulation results obtained from Monte-Carlo methods, stored in an array of files in .csv format, named by hash strings of corresponding simulation.<br> Relevant information of corresponding simulation, such like parameter settings and descriptions of tasks, are stored in the .siminfo files named with the same hash strings.<br> These files are all generated automatically by program, encoded in text format and and be opened with any text editor. <br> The scripts/notebooks for data generating and processing is given in the Simulations.zip.<br> <br>
DOI: 10.4121/19221657.v1
title: Data underlying the publication Direct numerical simulation of forced thermal convection in square ducts up to Reτ≈2000

description: Direct numerical simulation dataset of forced thermal convection in turbulent square duct flow.<br>Mean flow statistics for square duct flow at up to friction Reynolds number 2000Data are written in the Tecplot ASCII format and the order of the variables is reported in the file header.The case name follow the same notation as in the reference publication:<br>D. Modesti and S. Pirozzoli Direct numerical simulation of forced thermal convection in square ducts up to $\Rey_{\tau} \approx 2000$ J. Fluid Mech. 2022<br>Additional data turbulent square duct flow are available at http://newton.dima.uniroma1.it/<br>
DOI: 10.4121/19221657.v2
title: Data underlying the publication Direct numerical simulation of forced thermal convection in square ducts up to Reτ≈2000

description: Direct numerical simulation dataset of forced thermal convection in turbulent square duct flow.<br>Mean flow statistics for square duct flow at up to friction Reynolds number 2000Data are written in the Tecplot ASCII format and the order of the variables is reported in the file header.The case name follow the same notation as in the reference publication:<br>D. Modesti and S. Pirozzoli Direct numerical simulation of forced thermal convection in square ducts up to $\Rey_{\tau} \approx 2000$ J. Fluid Mech. 2022<br>Additional data turbulent square duct flow are available at http://newton.dima.uniroma1.it/<br>
DOI: 10.4121/19221657
title: Data underlying the publication Direct numerical simulation of forced thermal convection in square ducts up to Reτ≈2000

description: Direct numerical simulation dataset of forced thermal convection in turbulent square duct flow.<br>Mean flow statistics for square duct flow at up to friction Reynolds number 2000Data are written in the Tecplot ASCII format and the order of the variables is reported in the file header.The case name follow the same notation as in the reference publication:<br>D. Modesti and S. Pirozzoli Direct numerical simulation of forced thermal convection in square ducts up to $\Rey_{\tau} \approx 2000$ J. Fluid Mech. 2022<br>Additional data turbulent square duct flow are available at http://newton.dima.uniroma1.it/<br>
DOI: 10.4121/19886434
title: Ping360 sonar data recored at TU DELFT 3me pond [ROS2]

description: Sonar and MAVROS data recored in ros2 bag format using ROS. Recordings were performed using a BlueROV2 robot equipped with Ping360 sonar. ROS setup: - ROS2 Foxy - Ping360 sonar ROS2 package: https://github.com/CentraleNantesRobotics/ping360_sonar/tree/3ade26c7a6f22cc4f50488ae578282b36e150a04 - MAVROS: https://github.com/mavlink/mavros/commit/227b3accf7d16c7f0c468da25125e164de3ff292 <br> Data was recorded at TU Delft 3me pond 25-05-2022. This data will be used in the activities of REMARO (https://remaro.eu/) project.
DOI: 10.4121/14891094
title: Data underlying the publication: The tomato cytochrome P450 CYP712G1 catalyzes the double oxidation of orobanchol en route to the rhizosphere signaling strigolactone, solanacol

description: Transcriptome assemblies of Nicotiana tabacum, Astragalus sinensis, and Cosmos bipinnatus root RNA-seq data and sequence alignment with associated phylogenetic gene tree of cytochrome P450 CYP712 gene family protein sequences.
DOI: 10.4121/14891094.v1
title: Data underlying the publication: The tomato cytochrome P450 CYP712G1 catalyzes the double oxidation of orobanchol en route to the rhizosphere signaling strigolactone, solanacol

description: Transcriptome assemblies of Nicotiana tabacum, Astragalus sinensis, and Cosmos bipinnatus root RNA-seq data and sequence alignment with associated phylogenetic gene tree of cytochrome P450 CYP712 gene family protein sequences.
DOI: 10.4121/19867561.v1
title: Rhizome: Development of an Autarkic Design-to-Robotic-Production and -Operation System for Building Off-Earth Habitats (final report and movie)

description: In order for off-Earth top surface structures built from regolith to protect astronauts from radiation, they need to be several metres thick. Delft University of Technology (TU Delft) advanced research into constructing habitats in empty lava tubes on Mars in order to create subsurface habitats. By building below ground level not only natural protection from radiation is achieved but also thermal insulation because the temperature below ground is more stable. A swarm of autonomous mobile robots developed at TUD scans the caves, mines for in situ resource utilisation (ISRU), and with the excavated regolith that is mixed with cement constructs the habitat by means of automated and Human-Robot Interaction (HRI) supported Design-to-Robotic-Production-Assembly and -Operation (D2RPA&O) methods developed at TUD. The 3D printed rhizomatic habitat is a structurally optimised porous structure with increased thermal insulation properties due to its porosity.To regulate the indoor environment a Life Support System (LSS) is considered, which is, however, outside of the scope of the presented research. Instead, the production and operation of the habitat are explored by combining an automated kite-power system with solar panels in a microgrid with the goal to develop an autarkic D2RPA&O system for building off-Earth subsurface autarkic habitats from locally-obtained materials.