cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.r26vgk
title: Occurrence Download

description: A dataset containing 8892 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "OccurrenceStatus is Present",
 "TaxonKey is Ludwigia peploides (Kunth) P.H.Raven",
 "Year 1982-2022"
 ]
}

 The dataset includes 8892 records from 349 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000787-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14207239
title: Raw Data and Analysis Codes for the Dynamic control of the NHSE manuscript

description: Raw Data and Analysis Codes for the Dynamic control of the NHSE manuscript
DOI: 10.5281/zenodo.14207240
title: Raw Data and Analysis Codes for the Dynamic control of the NHSE manuscript

description: Raw Data and Analysis Codes for the Dynamic control of the NHSE manuscript
DOI: 10.5281/zenodo.14207338
title: Brida 2024 data files

description: This dataset contains the following related to Brida et al 2024 Science Advances



All Prism files supporting conclusions of this publication

Histological validation of targeting for behavioral experiments

The processed Seurat object for CRISPRi Reln knockdown snRNAseq experiment presented in Figure 4 ("allRats_souped_noDoub.rds")

csv's for supplemental figures S5 & S8
DOI: 10.5281/zenodo.14207339
title: Brida 2024 data files

description: This dataset contains the following related to Brida et al 2024 Science Advances



All Prism files supporting conclusions of this publication

Histological validation of targeting for behavioral experiments

The processed Seurat object for CRISPRi Reln knockdown snRNAseq experiment presented in Figure 4 ("allRats_souped_noDoub.rds")

csv's for supplemental figures S5 & S8
DOI: 10.15468/dl.9cu62b
title: Occurrence Download

description: A dataset containing 679036 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2024-09-30",
 "EventDate is less than or equal to 2024-10-30",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 679036 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000668-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14207443
title: Phillips 2023 acute & repeated cocaine object

description: Contains the integrated acute & repated cocaine R object published in Phillips et al 2023 Molecular Cellular Neuorscience
DOI: 10.5281/zenodo.14207444
title: Phillips 2023 acute & repeated cocaine object

description: Contains the integrated acute & repated cocaine R object published in Phillips et al 2023 Molecular Cellular Neuorscience
DOI: 10.15468/dl.mstw7z
title: Occurrence Download

description: A dataset containing 224 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arctostaphylos hooveri P.V.Wells"
 ]
}

 The dataset includes 224 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000789-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15784/601860
title: Ice-penetrating radar data from the Thwaites Glacier grounding zone

description: Contains ice-penetrating radar data (10 and 400 MHz) from the Thwaites Glacier grounding zone. The main purpose of collecting these data was for safety assessment at a camp put-in; deep (10 MHz) radar data were also collected opportunistically.
DOI: 10.5281/zenodo.12626900
title: Molecular dynamics simulations for "Evolutionary Dynamics of RuBisCO: Emergence of the Small Subunit and its Impact Through Time"

description: This repository contains the molecular dynamics simulation files for the extant and ancestral RuBisCOs, presented in Amritkar2024 et. al.

There are two separate folders, one for the regular MD simulations and the other for MD simulations with gas trajectories.

Both folders have the simulation trajectory `.dcd` files and the `.pdb` for their corresponding protein structures.

The trajectory files are dried, i.e. water molecules have been removed from them.

The data encompasses over 7 extant (pdb ids: 1BWV, 3ZXW, 6FTL, 6URA, 7SNV, 8RUC, 9RUB) and 8 ancestral (Anc-I/I', Anc-I', Anc-I, Anc-IAB, Anc-ICD, Anc-IA, Anc-IB, Anc-I-without-RbcS) RuBisCO complexes.

This study performed three types of simulations: with water molecules (labeled as exp01), with water + CO2 molecules (labeled as exp02), and with water + O2 molecules (labeled as exp04).

There are two replicates for the exp01 simulations and the simulation length for each is 250 ns.

The exp02 and exp04 files are not present for the RbcS-less (Anc-I/I', Anc-I', Anc-I-without_RbcS, 6URA, and 9RUB) RuBisCOs. The simulation length for the gas simulations is 75 ns and one replicate.

Each file is named "RuBisCO-system"."simulation-type".md"replicate-number".dry."pdb or dcd".

The files are named with respect to each RuBisCO-id in small (No caps). Anc-I/I' is represented as "anciip" and Anc-I' is represented as "ancip".
DOI: 10.5281/zenodo.14187581
title: Molecular dynamics simulations for "Evolutionary Dynamics of RuBisCO: Emergence of the Small Subunit and its Impact Through Time"

description: This repository contains the molecular dynamics simulation files for the extant and ancestral RuBisCOs, presented in Amritkar2024 et. al.

There are two separate folders, one for the regular MD simulations and the other for MD simulations with gas trajectories.

Both folders have the simulation trajectory `.dcd` files and the `.pdb` for their corresponding protein structures.

The trajectory files are dried, i.e. water molecules have been removed from them.

The data encompasses over 7 extant (pdb ids: 1BWV, 3ZXW, 6FTL, 6URA, 7SNV, 8RUC, 9RUB) and 8 ancestral (Anc-I/I', Anc-I', Anc-I, Anc-IAB, Anc-ICD, Anc-IA, Anc-IB, Anc-I-without-RbcS) RuBisCO complexes.

This study performed three types of simulations: with water molecules (labeled as exp01), with water + CO2 molecules (labeled as exp02), and with water + O2 molecules (labeled as exp04).

There are two replicates for the exp01 simulations and the simulation length for each is 250 ns.

The exp02 and exp04 files are not present for the RbcS-less (Anc-I/I', Anc-I', Anc-I-without_RbcS, 6URA, and 9RUB) RuBisCOs. The simulation length for the gas simulations is 75 ns and one replicate.

Each file is named "RuBisCO-system"."simulation-type".md"replicate-number".dry."pdb or dcd".

The files are named with respect to each RuBisCO-id in small (No caps). Anc-I/I' is represented as "anciip" and Anc-I' is represented as "ancip".
DOI: 10.22003/xfel.eu-data-007316-00
title: LTP - Establishing high-quality ultra-fast total scattering/pair distribution function techniques (uf-TS/PDF) at the EuXFEL for time-dependent studies of local (dis)ordering processes (derived from 3248)
DOI: 10.15468/dl.vrms78
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rattus exulans (Peale, 1848)",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 14 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000791-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mu7bcx
title: Occurrence Download

description: A dataset containing 12373 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spheniscus demersus (Linnaeus, 1758)"
 ]
}

 The dataset includes 12373 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000792-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7q9ve6
title: Occurrence Download

description: A dataset containing 1782 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "OccurrenceStatus is Present",
 "TaxonKey is Pterois antennata (Bloch, 1787)",
 "Year 2000-2024"
 ]
}

 The dataset includes 1782 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000793-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15784/601834
title: Ice-penetrating radar data from the northern embayment of the Mt. Murphy massif

description: Contains ice-penetrating radar data (10, 100, and 400 MHz) from the north side of the Mt. Murphy massif. Most of these data are closely spaced lines used for reconnaissance and site selection for a subglacial bedrock recovery drilling project very close to the ice margin at the north ridge of Kay Peak, a sub-peak of the massif. In addition, there are several longer exploratory lines that cross the embayment between the massif and the Crosson Ice Shelf, some of which may cross grounding lines.
DOI: 10.25345/c5nz8124b
title: MassIVE MSV000096518 - Proteomic characterization of eVLPs containing hu EGFR or Insulin Receptor
title: Affinity purified eVLP preparations were dissolved in SDS and prepared for mass spectrometry using the CSP method of Lin et al. DOI: 10.1016/j.ab.2012.09.023. 2 to 4 injections of each sample were performed and spectra collected using a DDA 75-minute method. Files are named as follows: SEE for eVLPs bearing EGFR, IR for eVLPs bearing Insulin Receptor, and TM for control VLPs containing epitope-tagged protein comprised of the EGFR transmembrane region fused to the EABR sequence. For each sample sequential injections are designated as a,b,c,d.
DOI: 10.15468/dl.frvpbw
title: Occurrence Download

description: A dataset containing 1782 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "OccurrenceStatus is Present",
 "TaxonKey is Pterois antennata (Bloch, 1787)",
 "Year 2000-2024"
 ]
}

 The dataset includes 1782 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000796-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8hmwcm
title: Occurrence Download

description: A dataset containing 33706 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rattus norvegicus (Berkenhout, 1769)",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 33706 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000794-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h6wd6q
title: Occurrence Download

description: A dataset containing 1782 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "OccurrenceStatus is Present",
 "TaxonKey is Pterois antennata (Bloch, 1787)",
 "Year 2000-2024"
 ]
}

 The dataset includes 1782 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000795-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nzkmgh
title: Occurrence Download

description: A dataset containing 1782 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "OccurrenceStatus is Present",
 "TaxonKey is Pterois antennata (Bloch, 1787)",
 "Year 2000-2024"
 ]
}

 The dataset includes 1782 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000798-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/f7mg7mr0
title: Common Eider Blood Chemistry Data, Alaska, 2004-2006

description: This data set contains information on blood chemistry and hematological parameters of captive Pacific Common Eiders (Somateria mollissima v-nigrum) for reference periods and after satellite transmitter implantation. These data were collected for health assessments, to evaluate seasonal changes in regularly measured biomarkers, to assess the physiological responses to dive conditioning, and to measure responses to surgical implantation of a satellite transmitter.
DOI: 10.15468/dl.qfp3pp
title: Occurrence Download

description: A dataset containing 1782 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "OccurrenceStatus is Present",
 "TaxonKey is Pterois antennata (Bloch, 1787)",
 "Year 2000-2024"
 ]
}

 The dataset includes 1782 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000799-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b4nv6y
title: Occurrence Download

description: A dataset containing 3372 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bassariscus astutus (Lichtenstein, 1830)"
 ]
}

 The dataset includes 3372 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000800-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e7mdwt
title: Occurrence Download

description: A dataset containing 4459 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "Continent is North America",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is CR",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus affinis Cresson, 1863",
 "Year 2001-2024"
 ]
}

 The dataset includes 4459 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000801-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.atceas
title: Occurrence Download

description: A dataset containing 2558 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Specimen, Living Specimen, Occurrence evidence)",
 "Continent is one of (North America, South America)",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Gyrinophilus porphyriticus (Green, 1827), Gyrinophilus porphyriticus porphyriticus)",
 "Year 2004-2024"
 ]
}

 The dataset includes 2558 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000802-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mxvzr4
title: Occurrence Download

description: A dataset containing 1557 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pteronura brasiliensis Zimmermann, 1780"
 ]
}

 The dataset includes 1557 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000803-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11495404
title: Data for "The 20-year highest tropical cyclone-generated waves associated with the maximum energy of seismic noises" (Subset 1)

description: This is dataset of ocean wave simulations used in the paper "The 20-year highest tropical cyclone-generated waves associated with the maximum energy of seismic noises" by Shimura et al. (submitted).

The dataset contains 



significant wave height (Subset 1),

wave induced surface pressure (Subset 2)

long-period componet of wave heights (Subset 3)

long-period component of surface pressure (Subset 4)


during 2004 from 2023 summer.
DOI: 10.5281/zenodo.11495405
title: Data for "The 20-year highest tropical cyclone-generated waves associated with the maximum energy of seismic noises" (Subset 1)

description: This is dataset of ocean wave simulations used in the paper "The 20-year highest tropical cyclone-generated waves associated with the maximum energy of seismic noises" by Shimura et al. (submitted).

The dataset contains 



significant wave height (Subset 1),

wave induced surface pressure (Subset 2)

long-period componet of wave heights (Subset 3)

long-period component of surface pressure (Subset 4)


during 2004 from 2023 summer.
DOI: 10.5066/p13toywg
title: Waterfowl (Anatidae) Brood Data, Maine, 1977 – 1994

description: Our data include detailed information about 12 species of Anatidae broods encountered on four study areas in Maine during 1977–1994 as one dataset. The second dataset provides the characteristics of the wetlands which were monitored during the studies. The third dataset enumerates the effort (such as numbers of visits to each wetland) to determine numbers of broods and the number of young that reached Class IIC-III to fledge. Each wetland is described by size, pH, specific conductivity, and class according to the system of Cowardin and others (1979, Classification of wetlands and deepwater habitats of the United States, USFWS publication, 131 p.). More details of the datasets are included in the companion USGS Data Report.
DOI: 10.5281/zenodo.11652369
title: Data for "The 20-year highest tropical cyclone-generated waves associated with the maximum energy of seismic noises" (Subset 4)

description: This is dataset of ocean wave simulations used in the paper "The 20-year highest tropical cyclone-generated waves associated with the maximum energy of seismic noises" by Shimura et al. (submitted).

The dataset contains 



significant wave height (Subset 1),

wave induced surface pressure (Subset 2)

long-period componet of wave heights (Subset 3)

long-period component of surface pressure (Subset 4)


during 2004 from 2023 summer.
DOI: 10.5281/zenodo.11652368
title: Data for "The 20-year highest tropical cyclone-generated waves associated with the maximum energy of seismic noises" (Subset 4)

description: This is dataset of ocean wave simulations used in the paper "The 20-year highest tropical cyclone-generated waves associated with the maximum energy of seismic noises" by Shimura et al. (submitted).

The dataset contains 



significant wave height (Subset 1),

wave induced surface pressure (Subset 2)

long-period componet of wave heights (Subset 3)

long-period component of surface pressure (Subset 4)


during 2004 from 2023 summer.
DOI: 10.5281/zenodo.11495406
title: Data for "The 20-year highest tropical cyclone-generated waves associated with the maximum energy of seismic noises" (Subset 2)

description: This is dataset of ocean wave simulations used in the paper "The 20-year highest tropical cyclone-generated waves associated with the maximum energy of seismic noises" by Shimura et al. (submitted).

The dataset contains 



significant wave height (Subset 1),

wave induced surface pressure (Subset 2)

long-period componet of wave heights (Subset 3)

long-period component of surface pressure (Subset 4)


during 2004 from 2023 summer.
DOI: 10.5281/zenodo.11495407
title: Data for "The 20-year highest tropical cyclone-generated waves associated with the maximum energy of seismic noises" (Subset 2)

description: This is dataset of ocean wave simulations used in the paper "The 20-year highest tropical cyclone-generated waves associated with the maximum energy of seismic noises" by Shimura et al. (submitted).

The dataset contains 



significant wave height (Subset 1),

wave induced surface pressure (Subset 2)

long-period componet of wave heights (Subset 3)

long-period component of surface pressure (Subset 4)


during 2004 from 2023 summer.
DOI: 10.15468/dl.pjjtvb
title: Occurrence Download

description: A dataset containing 244 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-103.32148 20.61864,-103.31186 20.6175,-103.31186 20.61365,-103.31063 20.61346,-103.3093 20.61742,-103.30901 20.61737,-103.30816 20.62002,-103.30801 20.62094,-103.30825 20.62407,-103.31155 20.62337,-103.31787 20.6238,-103.32104 20.62426,-103.32148 20.61864))"
 ]
}

 The dataset includes 244 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000805-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.frfysg
title: Occurrence Download

description: A dataset containing 6668 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panthera tigris (Linnaeus, 1758)"
 ]
}

 The dataset includes 6668 records from 125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000806-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z869f9
title: Occurrence Download

description: A dataset containing 1273451 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is LC",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 2021-2023"
 ]
}

 The dataset includes 1273451 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000768-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11495367
title: Data for "The 20-year highest tropical cyclone-generated waves associated with the maximum energy of seismic noises" (Subset 3)

description: This is dataset of ocean wave simulations used in the paper "The 20-year highest tropical cyclone-generated waves associated with the maximum energy of seismic noises" by Shimura et al. (submitted).

The dataset contains 



significant wave height (Subset 1),

wave induced surface pressure (Subset 2)

long-period componet of wave heights (Subset 3)

long-period component of surface pressure (Subset 4)


during 2004 from 2023 summer.
DOI: 10.5281/zenodo.11495368
title: Data for "The 20-year highest tropical cyclone-generated waves associated with the maximum energy of seismic noises" (Subset 3)

description: This is dataset of ocean wave simulations used in the paper "The 20-year highest tropical cyclone-generated waves associated with the maximum energy of seismic noises" by Shimura et al. (submitted).

The dataset contains 



significant wave height (Subset 1),

wave induced surface pressure (Subset 2)

long-period componet of wave heights (Subset 3)

long-period component of surface pressure (Subset 4)


during 2004 from 2023 summer.