cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.4zev2y
title: Occurrence Download

description: A dataset containing 151 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euphausia pacifica Hansen, 1911",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 151 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002128-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.83gzrc
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAB3927"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002129-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f5794n
title: Occurrence Download

description: A dataset containing 1453 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Lucanus cervus (Linnaeus, 1758)",
 "Year 2024-2024"
 ]
}

 The dataset includes 1453 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002131-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7hmpqq
title: Occurrence Download

description: A dataset containing 12758 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-20.52378 23.64643,82.48234 23.64643,82.48234 77.80136,-20.52378 77.80136,-20.52378 23.64643))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cotula coronopifolia L.",
 "Year 1980-2024"
 ]
}

 The dataset includes 12758 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002130-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jfavce
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Squalus brevirostris Tanaka, 1917",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 50 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002132-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12569945
title: campethera_caroli_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.12569946
title: campethera_caroli_spades_01.fasta.gz

description: .
DOI: 10.15468/dl.dzpgzz
title: Occurrence Download

description: A dataset containing 197 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anthias squammipinnis (Peters, 1855)"
 ]
}

 The dataset includes 197 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002134-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/67x-f8p-pr7
title: Chromista

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/am4-dtr-0j9
title: Planorbulinella Cushman, 1927

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4e3-9rf-y74
title: †Gavelinella acuta (Plummer, 1927)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fy3-2t4-hkb
title: Carpenteria utricularis (Carter, 1876)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pyr-avk-833
title: Eponides concameratus (Montagu, 1808)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7a9-f20-6a5
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7f7-8qs-m15
title: Stomatorbina concentrica (Parker & Jones, 1864)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vf5-8y7-twv
title: Favulina hexagona (Williamson, 1848)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dsa-9x8-y0d
title: †Berthelina umbilicata (Brotzen, 1948)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/txg-j58-38r
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1hz-5ez-k06
title: †Cythereis pulchra Jennings, 1936

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rb1-taq-q24
title: Sorites orbiculus (Forsskål in Niebuhr, 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/drp-vnm-h6m
title: Discanomalina coronata (Parker & Jones, 1865)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mgv-dg0-21x
title: Miliolidae Ehrenberg, 1839

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w08-l2t-4gt
title: Amphicoryna intercellularis (Brady, 1881)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/529-nn1-h73
title: Lenticulina saulcyi (d'Orbigny, 1839)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xll-p10-fqk
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.h2zdtp
title: Occurrence Download

description: A dataset containing 180 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thymallus thymallus",
 "GadmGid is DEU.2_1"
 ]
}

 The dataset includes 180 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018487-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/ptq-23n-ym6
title: †Neoflabellina praereticulata Hiltermann, 1952

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ywx-193-rqq
title: Eponides concameratus (Montagu, 1808)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kz9-laf-aby
title: Nummulitidae Blainville, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wn6-e43-anh
title: Apodemus sylvaticus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8cz-85y-5qx
title: †Aragonia Finlay, 1939

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b6c-a17-zj3
title: Quinqueloculina polygona d'Orbigny, 1839

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/70h-vbq-yqf
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dst-9zk-464
title: Eponides repandus (Fichtel & Moll, 1798)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r2s-hyf-sy0
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g2r-sj8-0ek
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r5w-pqt-g1s
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0wf-g3s-0yt
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hcd-gc9-bpt
title: Cribrostomoides subglobosus (Cushman, 1910)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9f8-bn1-6et
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ggj-mza-qj0
title: †Citharina acuminata (Reuss, 1863)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.bst9p2
title: Occurrence Download

description: A dataset containing 889989 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "DatasetKey is one of (EOD – eBird Observation Dataset, The Taiwan Breeding Bird Survey Data, Taiwan Wild Bird Federation Bird Records Database, iNaturalist Research-grade Observations, Taiwan New Year Bird Count, Investigation Current Status of River in Taiwan between 2002 to 2022, Long-term Bird Census in Cigu 2004-2017, 臺北市政府工務局水利工程處轄管濕地及滯洪池生態監測資料, Observation.org, Nature data from around the World, Avian communities of betel nut plantation and secondary forest in Taiwan)",
 "TaxonKey is Pycnonotus sinensis"
 ]
}

 The dataset includes 889989 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012991-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gbaj7y
title: Occurrence Download

description: A dataset containing 353 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aspredo aspredo"
 ]
}

 The dataset includes 353 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009565-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17525842
title: Circulating chromatin reveal regulatory genetic effects of disease-associated variants

description: An atlas of genetic determinants of circulating chromatin mapped from large-scale cell-free chromatin profiles in cancer patients and healthy controls. Cell-free chromatin QTL (cfcQTL) mapping leveraged H3K27ac profiles (marking active enhancers and promoters) and H3K4me3 profiles (marking active promoters) assessed using cell-free chromatin immunoprecipitation sequencing (cfChIP-seq). Profiling of histone modifications in plasma-derived chromatin enabled genome-wide discovery of chromatin quantitative trait loci (cQTL) across diverse tissue contexts. This liquid biopsy approach provides scalable access to map genetic effects on regulatory element activity in non-hematologic and developmentally restricted tissues that are typically inaccessible through conventional sampling, facilitating studies of regulatory genetic architecture underlying complex traits and disease risk.

Briefly, this repo contains the following data:



cfcPeaks: Chromatin peaks with significant cfcQTLs

cfcQTLs: Cell-free chromatin quantitative trait loci

cfCWAS: Cell-free chromatin wide association studies

combined-statsfile: Combined summary statistics for cfcQTLs and cfCWAS for both K4me3 and K27ac


READMEs are provided for all data in the repo.
DOI: 10.5281/zenodo.17538570
title: Circulating chromatin reveal regulatory genetic effects of disease-associated variants

description: An atlas of genetic determinants of circulating chromatin mapped from large-scale cell-free chromatin profiles in cancer patients and healthy controls. Cell-free chromatin QTL (cfcQTL) mapping leveraged H3K27ac profiles (marking active enhancers and promoters) and H3K4me3 profiles (marking active promoters) assessed using cell-free chromatin immunoprecipitation sequencing (cfChIP-seq). Profiling of histone modifications in plasma-derived chromatin enabled genome-wide discovery of chromatin quantitative trait loci (cQTL) across diverse tissue contexts. This liquid biopsy approach provides scalable access to map genetic effects on regulatory element activity in non-hematologic and developmentally restricted tissues that are typically inaccessible through conventional sampling, facilitating studies of regulatory genetic architecture underlying complex traits and disease risk.

Briefly, this repo contains the following data:



cfcPeaks: Chromatin peaks with significant cfcQTLs

cfcQTLs: Cell-free chromatin quantitative trait loci

cfCWAS: Cell-free chromatin wide association studies

combined-statsfile: Combined summary statistics for cfcQTLs and cfCWAS for both K4me3 and K27ac


READMEs are provided for all data in the repo.
DOI: 10.15468/dl.3maacq
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Primulina yangchunensis"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019047-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gbd5k8
title: Occurrence Download

description: A dataset containing 1654 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lygodium palmatum",
 "Year 1961-2025"
 ]
}

 The dataset includes 1654 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019048-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqudf7
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Primulina cangwuensis"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019049-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uat362
title: Occurrence Download

description: A dataset containing 10709 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Insect Specimens of Gunma Insect World"
 ]
}

 The dataset includes 10709 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019050-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30338854
title: Integrated transcriptomic and proteomic analysis reveals inflammatory activation and blood-brain barrier disruption during meningitis-associated <i>Escherichia coli</i> infection

description: <b>Figure S1. Differential expression analysis and principal component analysis of transcriptomic and proteomic data.</b> (A) Volcano plot of transcriptomic data showing differential gene expression in RS218 compared to mock conditions. Differentially expressed genes are shown in red (upregulated) and blue (downregulated). (B) Principal component analysis (PCA) of transcriptomic data based on differentially expressed genes. (C) Volcano plot of proteomic data showing differential protein expression in RS218 compared to mock conditions. Differentially expressed proteins are shown in red (upregulated) and blue (downregulated). (D) Principal component analysis (PCA) of proteomic data based on all differentially expressed proteins.<b>Figure S2. Blood biochemical and hematological parameters in mice following RS218 infection. </b>(A) Blood biochemical parameters measured in mock-infected controls and mice at 4 and 12 hours post-infection. Parameters include albumin/globulin ratio, total bilirubin, amylase, creatine kinase, triglyceride, and AST/ALT ratio. (B) Hematological parameters including mid-sized cell count (MID), mid-sized cell percentage (MID%), red blood cell count (RBC), hemoglobin (HGB), hematocrit (HCT), mean corpuscular volume (MCV), mean corpuscular hemoglobin (MCH), mean corpuscular hemoglobin concentration (MCHC), red cell distribution width coefficient of variation (RDW_CV), red cell distribution width standard deviation (RDW_SD), mean platelet volume (MPV), platelet distribution width (PDW), platelet large cell ratio (P_LCR), platelet large cell count (P_LCC), and plateletcrit (PCT).<b>Table S1. Differentially expressed genes in transcriptomics.</b><b>Table S2. Differentially expressed proteins in proteomics.</b><b>Table S3. Abundance of genes co-upregulated in transcriptome and proteome.</b><b>Table S4. Top 100 enriched terms from comparative analysis of upregulated transcriptome and proteome.</b><b>Table S5. Abundance of genes co-downregulated in transcriptome and proteome.</b><b>Table S6. Top 100 enriched terms from comparative analysis of downregulated transcriptome and proteome.</b><b>Table S7. Shared enriched terms between upregulated and downregulated transcriptome and proteome.</b><b>Table S8. Transcriptome and proteome discordant genes.</b>
DOI: 10.6084/m9.figshare.30338854.v4
title: Integrated transcriptomic and proteomic analysis reveals inflammatory activation and blood-brain barrier disruption during meningitis-associated <i>Escherichia coli</i> infection

description: <b>Figure S1. Differential expression analysis and principal component analysis of transcriptomic and proteomic data.</b> (A) Volcano plot of transcriptomic data showing differential gene expression in RS218 compared to mock conditions. Differentially expressed genes are shown in red (upregulated) and blue (downregulated). (B) Principal component analysis (PCA) of transcriptomic data based on differentially expressed genes. (C) Volcano plot of proteomic data showing differential protein expression in RS218 compared to mock conditions. Differentially expressed proteins are shown in red (upregulated) and blue (downregulated). (D) Principal component analysis (PCA) of proteomic data based on all differentially expressed proteins.<b>Figure S2. Blood biochemical and hematological parameters in mice following RS218 infection. </b>(A) Blood biochemical parameters measured in mock-infected controls and mice at 4 and 12 hours post-infection. Parameters include albumin/globulin ratio, total bilirubin, amylase, creatine kinase, triglyceride, and AST/ALT ratio. (B) Hematological parameters including mid-sized cell count (MID), mid-sized cell percentage (MID%), red blood cell count (RBC), hemoglobin (HGB), hematocrit (HCT), mean corpuscular volume (MCV), mean corpuscular hemoglobin (MCH), mean corpuscular hemoglobin concentration (MCHC), red cell distribution width coefficient of variation (RDW_CV), red cell distribution width standard deviation (RDW_SD), mean platelet volume (MPV), platelet distribution width (PDW), platelet large cell ratio (P_LCR), platelet large cell count (P_LCC), and plateletcrit (PCT).<b>Table S1. Differentially expressed genes in transcriptomics.</b><b>Table S2. Differentially expressed proteins in proteomics.</b><b>Table S3. Abundance of genes co-upregulated in transcriptome and proteome.</b><b>Table S4. Top 100 enriched terms from comparative analysis of upregulated transcriptome and proteome.</b><b>Table S5. Abundance of genes co-downregulated in transcriptome and proteome.</b><b>Table S6. Top 100 enriched terms from comparative analysis of downregulated transcriptome and proteome.</b><b>Table S7. Shared enriched terms between upregulated and downregulated transcriptome and proteome.</b><b>Table S8. Transcriptome and proteome discordant genes.</b>
DOI: 10.15468/dl.zxphm5
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Primulina jianghuaensis"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019051-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17528401
title: Anno-Rice

description: Dataset for rice counting, featuring label files formatted for YOLO compatibility.Photographed at the teaching base of Anhui Agricultural University in Hefei, China, in July 2025.
DOI: 10.5281/zenodo.17528402
title: Anno-Rice

description: Dataset for rice counting, featuring label files formatted for YOLO compatibility.Photographed at the teaching base of Anhui Agricultural University in Hefei, China, in July 2025.
DOI: 10.6084/m9.figshare.30338854.v3
title: Integrated transcriptomic and proteomic analysis reveals inflammatory activation and blood-brain barrier disruption during meningitis-associated <i>Escherichia coli</i> infection

description: <b>Figure S1. Differential expression analysis and principal component analysis of transcriptome and proteome data. </b>(A) Volcano plot of transcriptomic data showing differential gene expression in RS218 compared to Mock conditions. Significantly differentially expressed genes (padj &lt; 0.05 and |log2 fold change| &gt; 1) are shown in red (upregulated) and blue (downregulated). (B) Principal component analysis (PCA) of transcriptomic data based on differentially expressed genes. (C) Volcano plot of proteomic data showing differential protein expression in RS218 compared to Mock conditions. Significantly differentially expressed proteins (<i>p</i> value &lt; 0.05 and fold change &gt; 1.5) are shown in red (upregulated) and blue (downregulated). (D) Principal component analysis (PCA) of proteomic data based on all differentially expressed proteins.<b>Figure S2. Blood biochemical and hematological parameters in mice following RS218 infection. </b>(A) Blood biochemical parameters measured in mock-infected controls and mice at 4 and 12 hours post-infection. Parameters include albumin/globulin ratio, total bilirubin, amylase, creatine kinase, triglyceride, and AST/ALT ratio. (B) Hematological parameters including mid-sized cell count (MID), mid-sized cell percentage (MID%), red blood cell count (RBC), hemoglobin (HGB), hematocrit (HCT), mean corpuscular volume (MCV), mean corpuscular hemoglobin (MCH), mean corpuscular hemoglobin concentration (MCHC), red cell distribution width coefficient of variation (RDW_CV), red cell distribution width standard deviation (RDW_SD), mean platelet volume (MPV), platelet distribution width (PDW), platelet large cell ratio (P_LCR), platelet large cell count (P_LCC), and plateletcrit (PCT).<b>Table S1. Differentially expressed genes in transcriptomics.</b><b>Table S2. Differentially expressed proteins in proteomics.</b><b>Table S3. Abundance of genes co-upregulated in transcriptome and proteome.</b><b>Table S4. Top 100 enriched terms from comparative analysis of upregulated transcriptome and proteome.</b><b>Table S5. Abundance of genes co-downregulated in transcriptome and proteome.</b><b>Table S6. Top 100 enriched terms from comparative analysis of downregulated transcriptome and proteome.</b><b>Table S7. Shared enriched terms between upregulated and downregulated transcriptome and proteome.</b><b>Table S8. Transcriptome and proteome discordant genes.</b>