cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3079963
title: DFT study of the oxidation of primary alcohols by TEMPO+ cation in presence of NaCO3- buffer: concerted hydride transfer pathway

description: Data to support article: Hydrodynamic Rocking Disc Electrode Study of EC’-Type TEMPO-Mediated Primary Alcohol Oxidations <br> DOI: 10.6084/m9.figshare.3079963 Journal: Electroanalysis<br> Authors: Sunyhik D. Ahn <sup>a</sup>, Adrian C. Fisher <sup>b</sup>, Antoine Buchard <sup>a</sup>, <br> Steven D. Bull <sup>a</sup>, Alan M. Bond <sup>c</sup>, and Frank Marken*<sup>a</sup><sup><br></sup> <sup> </sup><i><sup>a</sup> Department of Chemistry, University of Bath, Claverton Down, Bath BA2 7AY, UK</i> <i><sup>b</sup> Department of Chemical Engineering, University of Cambridge, New Museums Site, Pembroke Street, Cambridge, CB2 3RA, UK</i> <i><sup>c</sup> Monash University, School of Chemistry, Clayton, Vic 3800, Australia</i> DFT study: - The DFT optimised geometries and computed free enthalpies of various primary alcohols and aldehydes was used to calculate the thermodynamics of the oxidation reaction of various primary alcohols in presence of TEMPO+ cation and NaCO3- anion. - A concerted hydride transfer step was also calculated and used to calculate the related activation barrier for each alcohol Protocol: rB3LYP/6-311+G(d,p)/cpcm=water/T=298.15K Content: - Gaussian09 rev A.02 output files <br>
DOI: 10.6084/m9.figshare.3079942
title: Does the presence of an odd individual affect group choice?

description: Data collected by FQ. Please refer to the manuscript for data collection methods and statistical analyses. Metadata for the .csv data files are included in the ReadMe.txt file. For questions or to notify the authors if any errors are identified in the data, please contact quattrinifausto@gmail.com or dominique.roche@mail.mcgill.ca This table contains the data recorded during an experiment to examine how the presence of an ‘odd’ individual in a shoal affects the behaviour and group choice of three species of coral reef fishes. <b>ABSTRACT:</b> Intra-specific group formation (shoaling) is common in fishes and provides several antipredator benefits, such as improved food and predator detection. However, coral reef fishes often form mixed-species shoals, which can generate costs for some group members. For example, the oddity effect posits that individuals that stand out from a group are more likely to be targeted by predators. Consequently, the presence of an odd fish might reduce the risk of predation to other group members. Alternatively, an odd individual that attracts predators might increase predation risk for the group as a whole. We examined three species of coral reef fishes using two-choice tests to investigate 1) whether individuals chose to associate with conspecifics over heterospecifics (i.e. the oddity effect), and 2) whether individuals associate with or avoid shoals containing an odd individual. We tested this second scenario under conditions of low- and high-predation pressure by manipulating the presence of a nearby predator. One species actively avoided associating with shoals of heterospecifics in support of the oddity effect. Less pronounced phenotypic differences between species pairs likely resulted in a lower relative risk of being odd and the absence of an oddity effects in the other two species. None of the three species showed either active avoidance or preference for shoals containing an odd individual. In instances where the oddity effect is apparent, lower predation risk to individuals associating with an odd fish might be negated by greater predation pressure on the group as a whole
DOI: 10.6084/m9.figshare.3079942.v1
title: Does the presence of an odd individual affect group choice?

description: Data collected by FQ. Please refer to the manuscript for data collection methods and statistical analyses. Metadata for the .csv data files are included in the ReadMe.txt file. For questions or to notify the authors if any errors are identified in the data, please contact quattrinifausto@gmail.com or dominique.roche@mail.mcgill.ca This table contains the data recorded during an experiment to examine how the presence of an ‘odd’ individual in a shoal affects the behaviour and group choice of three species of coral reef fishes. <b>ABSTRACT:</b> Intra-specific group formation (shoaling) is common in fishes and provides several antipredator benefits, such as improved food and predator detection. However, coral reef fishes often form mixed-species shoals, which can generate costs for some group members. For example, the oddity effect posits that individuals that stand out from a group are more likely to be targeted by predators. Consequently, the presence of an odd fish might reduce the risk of predation to other group members. Alternatively, an odd individual that attracts predators might increase predation risk for the group as a whole. We examined three species of coral reef fishes using two-choice tests to investigate 1) whether individuals chose to associate with conspecifics over heterospecifics (i.e. the oddity effect), and 2) whether individuals associate with or avoid shoals containing an odd individual. We tested this second scenario under conditions of low- and high-predation pressure by manipulating the presence of a nearby predator. One species actively avoided associating with shoals of heterospecifics in support of the oddity effect. Less pronounced phenotypic differences between species pairs likely resulted in a lower relative risk of being odd and the absence of an oddity effects in the other two species. None of the three species showed either active avoidance or preference for shoals containing an odd individual. In instances where the oddity effect is apparent, lower predation risk to individuals associating with an odd fish might be negated by greater predation pressure on the group as a whole
DOI: 10.6084/m9.figshare.3079897
title: A new small golden frog of the genus Pristimantis (Anura: Craugastoridae) from an Andean cloud forest of Colombia

description: A new species of <i>Pristimantis </i>is described from an Andean cloud forest at 2650 m in the Cordillera Oriental of Colombia. <i>Pristimantis dorado </i>sp. nov. is similar to and could be closely related to <i>P. acutirostris</i>, but can be readily distinguished from this latter species by the absence of a tympanic annulus, vocal slits, vocal sac and reticulations on concealed surfaces, and by having a metallic gold iris with a brown horizontal streak. The phylogenetic position of the new species is recovered and we provide its advertisement call, which this species manages to emit despite lacking a vocal sac and vocal slits. This discovery reminds us that despite the extensive research on the alpha-taxonomy of <i>Pristimantis </i>in Colombia, fieldwork in high montane forests continues to yield previously unknown species.
DOI: 10.6084/m9.figshare.3079897.v1
title: A new small golden frog of the genus Pristimantis (Anura: Craugastoridae) from an Andean cloud forest of Colombia

description: A new species of <i>Pristimantis </i>is described from an Andean cloud forest at 2650 m in the Cordillera Oriental of Colombia. <i>Pristimantis dorado </i>sp. nov. is similar to and could be closely related to <i>P. acutirostris</i>, but can be readily distinguished from this latter species by the absence of a tympanic annulus, vocal slits, vocal sac and reticulations on concealed surfaces, and by having a metallic gold iris with a brown horizontal streak. The phylogenetic position of the new species is recovered and we provide its advertisement call, which this species manages to emit despite lacking a vocal sac and vocal slits. This discovery reminds us that despite the extensive research on the alpha-taxonomy of <i>Pristimantis </i>in Colombia, fieldwork in high montane forests continues to yield previously unknown species.
DOI: 10.6084/m9.figshare.3079975.v1
title: Contribution Ontology sub graph

description: Credit Subgraph derived from https://github.com/openrif/contribution-ontology<br>Purpose: a cutdown set of triples to assist with credit data entry scenarios
DOI: 10.6084/m9.figshare.3079651.v1
title: Redox regulation of ascorbate and glutathione by a chloroplastic dehydroascorbate reductase is required for high-light stress tolerance in <i>Arabidopsis</i>

description: Chloroplasts are a significant site for reactive oxygen species production under illumination and, thus, possess a well-organized antioxidant system involving ascorbate. Ascorbate recycling occurs in different manners in this system, including a dehydroascorbate reductase (DHAR) reaction. We herein investigated the physiological significance of DHAR3 in photo-oxidative stress tolerance in <i>Arabidopsis</i>. GFP-fused DHAR3 protein was targeted to chloroplasts in <i>Arabidopsis</i> leaves. A DHAR3 knockout mutant exhibited sensitivity to high light (HL). Under HL, the ascorbate redox states were similar in mutant and wild-type plants, while total ascorbate content was significantly lower in the mutant, suggesting that DHAR3 contributes, at least to some extent, to ascorbate recycling. Activation of monodehydroascorbate reductase occurred in <i>dhar3</i> mutant, which might compensate for the lack of DHAR3. Interestingly, glutathione oxidation was consistently inhibited in <i>dhar3</i> mutant. These findings indicate that DHAR3 regulates both ascorbate and glutathione redox states to acclimate to HL. The redox regulation of ascorbate and glutathione by a chloroplastic dehydroascorbate reductase (DHAR3) is essential for photo-oxidative stress tolerance in <i>Arabidopsis</i>.
DOI: 10.6084/m9.figshare.3079540
title: Supplementary audio files for ‘Chromas from chromatin: Sonification of the epigenome’

description: Supplementary audio S1.1: Audio track extracted from region chr17:7531293-7631293<br>Supplementary audio S2.1: Audio track extracted from region chr4:9734445-9834445<br>Supplementary audio S3.1: Audio track extracted from region chr8:145689938-145789938<br>Supplementary audio S4.1: Audio track extracted from region chr2:25460307-25560307<br>Supplementary audio S5.1: Audio track extracted from region chrX:44802134-44902134<br>Supplementary audio S6.1: Audio track extracted from region chr15:44957020-45057020<br>Supplementary audio S7.1: Audio track extracted from region chr13:30986479-31086479<br>Supplementary audio S8.1: Audio track extracted from region chr10:89625864-89725864<br>Supplementary audio S9.1: Audio track extracted from region chr16:10944948-11044948<br>Supplementary audio S10.1: Audio track extracted from region chr8:128700997-128800997<br>Supplementary audio S1.2: Randomized audio track extracted from region chr17:7531293-7631293<br>Supplementary audio S2.2: Randomized audio track extracted from region chr4:9734445-9834445<br>Supplementary audio S3.2: Randomized audio track extracted from region chr8:145689938-145789938<br>Supplementary audio S4.2: Randomized audio track extracted from region chr2:25460307-25560307<br>Supplementary audio S5.2: Randomized audio track extracted from region chrX:44802134-44902134<br>Supplementary audio S6.2: Randomized audio track extracted from region chr15:44957020-45057020<br>Supplementary audio S7.2: Randomized audio track extracted from region chr13:30986479-31086479<br>Supplementary audio S8.2: Randomized audio track extracted from region chr10:89625864-89725864<br>Supplementary audio S9.2: Randomized audio track extracted from region chr16:10944948-11044948<br>Supplementary audio S10.2: Randomized audio track extracted from region chr8:128700997-128800997
DOI: 10.6084/m9.figshare.3079543
title: Supplementary table for ‘Chromas from chromatin: Sonification of the epigenome’

description: Supplementary table S1: Enrichr results for GO enrichment analysis. Enriched GO terms (Biological Process, Molecular Function and Cellular Component) are reported for each cluster identified by distance of musical tracks.
DOI: 10.6084/m9.figshare.3079975.v2
title: Contribution Ontology sub graph

description: Credit Subgraph derived from https://github.com/openrif/contribution-ontology<br>Purpose: a cutdown set of triples to assist with credit data entry scenarios
DOI: 10.6084/m9.figshare.3079540.v1
title: Supplementary audio files for ‘Chromas from chromatin: Sonification of the epigenome’

description: Supplementary audio S1.1: Audio track extracted from region chr17:7531293-7631293<br>Supplementary audio S2.1: Audio track extracted from region chr4:9734445-9834445<br>Supplementary audio S3.1: Audio track extracted from region chr8:145689938-145789938<br>Supplementary audio S4.1: Audio track extracted from region chr2:25460307-25560307<br>Supplementary audio S5.1: Audio track extracted from region chrX:44802134-44902134<br>Supplementary audio S6.1: Audio track extracted from region chr15:44957020-45057020<br>Supplementary audio S7.1: Audio track extracted from region chr13:30986479-31086479<br>Supplementary audio S8.1: Audio track extracted from region chr10:89625864-89725864<br>Supplementary audio S9.1: Audio track extracted from region chr16:10944948-11044948<br>Supplementary audio S10.1: Audio track extracted from region chr8:128700997-128800997<br>Supplementary audio S1.2: Randomized audio track extracted from region chr17:7531293-7631293<br>Supplementary audio S2.2: Randomized audio track extracted from region chr4:9734445-9834445<br>Supplementary audio S3.2: Randomized audio track extracted from region chr8:145689938-145789938<br>Supplementary audio S4.2: Randomized audio track extracted from region chr2:25460307-25560307<br>Supplementary audio S5.2: Randomized audio track extracted from region chrX:44802134-44902134<br>Supplementary audio S6.2: Randomized audio track extracted from region chr15:44957020-45057020<br>Supplementary audio S7.2: Randomized audio track extracted from region chr13:30986479-31086479<br>Supplementary audio S8.2: Randomized audio track extracted from region chr10:89625864-89725864<br>Supplementary audio S9.2: Randomized audio track extracted from region chr16:10944948-11044948<br>Supplementary audio S10.2: Randomized audio track extracted from region chr8:128700997-128800997
DOI: 10.6084/m9.figshare.3079543.v1
title: Supplementary table for ‘Chromas from chromatin: Sonification of the epigenome’

description: Supplementary table S1: Enrichr results for GO enrichment analysis. Enriched GO terms (Biological Process, Molecular Function and Cellular Component) are reported for each cluster identified by distance of musical tracks.
DOI: 10.6084/m9.figshare.3079975.v3
title: Contribution Ontology sub graph

description: Credit Subgraph derived from https://github.com/openrif/contribution-ontology<br>Purpose: a cutdown set of triples to assist with credit data entry scenarios
DOI: 10.6084/m9.figshare.3078268
title: <i>Co</i>-<i>Producing Mobilities</i>: negotiating geographical knowledge in a conference session on the move

description: In an experimental session entitled <i>Co</i>-<i>Producing Mobilities</i> held at the 2014 Royal Geographical Society-Institute of British Geographers Annual Conference, 20 mobility scholars travelled around London on foot, by bus and by Tube to investigate how mobilities could be considered co-produced. In this paper, 18 participants reflect on this collaborative experiment and on how it influenced their thinking about mobilities, geographical knowledge and pedagogy. Contributions cast light on the function of conferences and the multiple forms of pedagogy they enable, and provide guiding resources for those now wanting to continue such experiments.
DOI: 10.6084/m9.figshare.3078262
title: Social Competition Task

description: There were two monkeys sitting around a table. ECoG data and eye tracking data were recorded from one monkey. Motion data were captured from both monkeys and experimenter. For each trial, one food reward was placed on the table. If one monkey was dominant to the other, he could take the reward without hesitation. But, if he was submissive, he could not take the reward because of social suppression. ECoG data were obtained from one monkey under different hierarchycal conditions by pairing with multiple monkeys.<br>ECoG data were sampled at 1KHz. Motion data and eye tracking data were sampled at 120Hz. Start and stop point of all data were synchronized.<br><b>Data format</b>This dataset contains two matlab files (7.3 format) (kuma_social.mat, george_social.mat). Kuma and George are monkey's names (see a our web site http://neurotycho.org/spatial-map-ecog-array-task)<br>Each matlab data contains three type of data.1. ECoG_dataIt is ECoG data. It shows all ECoG data in this task via 3-dimensional array data format (trials, time(ms), channels)."trials" indicates index of trial in this experiment. Its label is represented in "condition_index"."time(ms)" indicates when the value was occured in each trial. It is determined with reference when food show period is started and contains ECoG data during -3,000ms and +3,000ms from time of start at food show period in each trial."channels" indicates index of ECoG channel. Location of each ECoG chanel is here (http://neurotycho.org/spatial-map-ecog-array-task.)<br>2. condition_indexIt indicates label of each trial. Each trail is labeld by task condition and monkey behavior. It contains sevral vector and each vector represents each condition and contains index of trial.The task condition contains two types of labels (social condition and which hand the monkey used to eat a food)."social condition" is consist of three conditons (hierarchy, conflict and location)."hierarchy" means hierarchy of paired monkey which is higher (H) or lower (L) than the ECoG recorded mokney."conflict" means task condition which is under conflict (C) or no conflict (NC)."location" means location of food presenter (human) which is left (l) or right (r) side.For example, HNCr means paired monkey was stronger than ECoG recorded monkey, under no conflict condition and food presenter was on right side from the ECoG recorded monkey. LC meand paired monkey was weaker than ECoG recorded monkey, under conflict condition and food presenter was left or right side from the ECoG recorded monkey.<br>3. day_sizeIt indicates how many trials on each day in the data. We experimented sevral days (Kuma is two, George is three).In Geroge case, index of first day experiment is [1:day_size[1]], index of second day experiment is [day_size[1]+1:day_size[2]] and index of third day experiment is [day_size[2]:end]
DOI: 10.6084/m9.figshare.3078268.v1
title: <i>Co</i>-<i>Producing Mobilities</i>: negotiating geographical knowledge in a conference session on the move

description: In an experimental session entitled <i>Co</i>-<i>Producing Mobilities</i> held at the 2014 Royal Geographical Society-Institute of British Geographers Annual Conference, 20 mobility scholars travelled around London on foot, by bus and by Tube to investigate how mobilities could be considered co-produced. In this paper, 18 participants reflect on this collaborative experiment and on how it influenced their thinking about mobilities, geographical knowledge and pedagogy. Contributions cast light on the function of conferences and the multiple forms of pedagogy they enable, and provide guiding resources for those now wanting to continue such experiments.
DOI: 10.6084/m9.figshare.3079975.v4
title: Contribution Ontology sub graph

description: Credit Subgraph derived from https://github.com/openrif/contribution-ontology<br>Purpose: a cutdown set of triples to assist with credit data entry scenarios
DOI: 10.6084/m9.figshare.3079975.v5
title: Contribution Ontology sub graph

description: Credit Subgraph derived from https://github.com/openrif/contribution-ontology<br>Purpose: a cutdown set of triples to assist with credit data entry scenarios
DOI: 10.6084/m9.figshare.3079975.v6
title: Contribution Ontology sub graph

description: Credit Subgraph derived from https://github.com/openrif/contribution-ontology<br>Purpose: a cutdown set of triples to assist with credit data entry scenarios
DOI: 10.6084/m9.figshare.3079975.v7
title: Contribution Ontology sub graph

description: Credit Subgraph derived from https://github.com/openrif/contribution-ontology<br>Purpose: a cutdown set of triples to assist with credit data entry scenarios
DOI: 10.6084/m9.figshare.3077869
title: Auditory Oddball

description: We adopted a roving oddball paradigm. The trains of repetitive tones of different frequencies were randomly presented. Epidural ECoG recordings were taken in the passive listening condition while monkeys were awake.<br>ECoG data were sampled at 1KHz.
DOI: 10.6084/m9.figshare.3079975.v8
title: Contribution Ontology sub graph

description: Credit Subgraph derived from https://github.com/openrif/contribution-ontology<br>Purpose: a cutdown set of triples to assist with credit data entry scenarios
DOI: 10.6084/m9.figshare.3075025
title: Modeling Nitrogen Losses in Conventional and Advanced Soil-Based Onsite Wastewater Treatment Systems under Current and Changing Climate Conditions. Supporting Information

description: Modeling results from advanced and conventional soil-based onsite wastewater treatment systems.
DOI: 10.6084/m9.figshare.3075025.v1
title: Modeling Nitrogen Losses in Conventional and Advanced Soil-Based Onsite Wastewater Treatment Systems under Current and Changing Climate Conditions. Supporting Information

description: Modeling results from advanced and conventional soil-based onsite wastewater treatment systems.
DOI: 10.6084/m9.figshare.3079975.v9
title: Contribution Ontology sub graph

description: Credit Subgraph derived from https://github.com/openrif/contribution-ontology<br>Purpose: a cutdown set of triples to assist with credit data entry scenarios
DOI: 10.6084/m9.figshare.3056296
title: Bag and loop small bowel contouring strategies differentially estimate small bowel dose for post-hysterectomy women receiving pencil beam scanning proton therapy

description: <b>Background</b> Small bowel (SB) dose-volume relationships established during initial computed tomography (CT) simulations may change throughout therapy due to organ displacement and motion. We investigated the impact of organ motion on SB dose-volume histograms (DVHs) in women with gynecologic malignancies treated with pencil beam scanning (PBS) proton therapy and compared PBS SB DVHs to intensity-modulated radiation therapy (IMRT). <b>Material and methods</b> Post-hysterectomy patients (<i>n</i> = 11) treated for gynecologic cancers were enrolled on an image-guided proton therapy protocol involving CT simulation with full (CT<sub>F</sub>) and empty (CT<sub>E</sub>) bladders and weekly/biweekly on-treatment scans. IMRT plans were generated for comparative analysis. SB was contoured as bowel loops or bowel bag. Wilcoxon signed-rank tests were used for matched-pair comparisons of SB, bladder, and rectum dose-volumes between CT scans and between PBS and IMRT plans. <b>Results</b> In PBS loops analysis, on-treatment DVH was significantly higher than CT<sub>F</sub> for doses &lt;45 Gy (<i>p</i> E. Specifically, V15 for loops was higher on-treatment (median 240 cm<sup>3</sup>) compared to CT<sub>F</sub> (median 169 cm<sup>3</sup>, <i>p</i> = 0.03). In PBS bag analysis, on-treatment DVH was not significantly different from CT<sub>F</sub> across all dose ranges. Bowel bag V45 was not significantly different between on-treatment (median 540 cm<sup>3</sup>) and CT<sub>F</sub> (median 499 cm<sup>3</sup>, <i>p</i> = 0.53). Decreasing bladder volume was associated with increasing V15 for loops and V45 for bowel bag (<i>p</i> F. <b>Conclusions</b> SB DVHs were well estimated by CT<sub>F</sub> bowel bag and underestimated by CT<sub>F</sub> loops in the setting of inconsistent bladder filling. Verifying bladder filling prior to treatment or using CT<sub>E</sub> for planning may more conservatively estimate SB dose-volume relationships.