cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7741217
title: Efficient GPU Offloading with OpenMP for a Hyperbolic Finite Volume Solver on Dynamically Adaptive Meshes

description: We identify and show how to overcome an OpenMP bottleneck in the administration of GPU memory. It arises for a wave equation solver on dynamically adaptive block-structured Cartesian meshes, which keeps all CPU threads busy and allows all of them to offload sets of patches to the GPU. Our studies show that multithreaded, concurrent, non-deterministic access to the GPU leads to performance breakdowns, since the GPU memory bookkeeping as offered through OpenMP's map clause, i.e., the allocation and freeing, becomes another runtime challenge besides expensive data transfer and actual computation. We, therefore, propose to retain the memory management responsibility on the host: A caching mechanism acquires memory on the accelerator for all CPU threads, keeps hold of this memory and hands it out to the offloading threads upon demand. We show that this user-managed, CPU-based memory administration helps us to overcome the GPU memory bookkeeping bottleneck and speeds up the time-to-solution of Finite Volume kernels by more than an order of magnitude.
DOI: 10.5281/zenodo.7746278
title: Efficient GPU Offloading with OpenMP for a Hyperbolic Finite Volume Solver on Dynamically Adaptive Meshes

description: We identify and show how to overcome an OpenMP bottleneck in the administration of GPU memory. It arises for a wave equation solver on dynamically adaptive block-structured Cartesian meshes, which keeps all CPU threads busy and allows all of them to offload sets of patches to the GPU. Our studies show that multithreaded, concurrent, non-deterministic access to the GPU leads to performance breakdowns, since the GPU memory bookkeeping as offered through OpenMP's map clause, i.e., the allocation and freeing, becomes another runtime challenge besides expensive data transfer and actual computation. We, therefore, propose to retain the memory management responsibility on the host: A caching mechanism acquires memory on the accelerator for all CPU threads, keeps hold of this memory and hands it out to the offloading threads upon demand. We show that this user-managed, CPU-based memory administration helps us to overcome the GPU memory bookkeeping bottleneck and speeds up the time-to-solution of Finite Volume kernels by more than an order of magnitude.
DOI: 10.5281/zenodo.7951195
title: Efficient GPU Offloading with OpenMP for a Hyperbolic Finite Volume Solver on Dynamically Adaptive Meshes

description: We identify and show how to overcome an OpenMP bottleneck in the administration of GPU memory. It arises for a wave equation solver on dynamically adaptive block-structured Cartesian meshes, which keeps all CPU threads busy and allows all of them to offload sets of patches to the GPU. Our studies show that multithreaded, concurrent, non-deterministic access to the GPU leads to performance breakdowns, since the GPU memory bookkeeping as offered through OpenMP's map clause, i.e., the allocation and freeing, becomes another runtime challenge besides expensive data transfer and actual computation. We, therefore, propose to retain the memory management responsibility on the host: A caching mechanism acquires memory on the accelerator for all CPU threads, keeps hold of this memory and hands it out to the offloading threads upon demand. We show that this user-managed, CPU-based memory administration helps us to overcome the GPU memory bookkeeping bottleneck and speeds up the time-to-solution of Finite Volume kernels by more than an order of magnitude.
DOI: 10.34740/kaggle/dsv/5615731
title: Classifying or Clustering English News Articles
DOI: 10.5281/zenodo.7935098
title: Uthmeier, Mischka (Hrsg.), Steinzeit in Bayern. Literatur Teil 7: Jüngere Steinzeit - Neolithikum

description: Thorsten Uthmeier, <br> Doris Mischka (Hrsg.) STEINZEIT <br> IN BAYERN unter Mitarbeit von <br> Christoph Mayr, Carsten Mischka, <br> Martin Nadler, Andreas Pastoors In dem Druckexemplar finden sich lediglich stark gekürzte Literaturlisten. Über ZENODO werden die kompletten Literaturlisten der einzelnen Teile zur Verfügung gestellt. Weitere Teile sind: Teil 1: Methoden Teil 2: Klima und Umwelt Teil 3: Mensch Teil 4: Ernährung Teil 5: Ältere Steinzeit – Paläolithikum Teil 6: Ausgehende Ältere und Mittlere Steinzeit - Spätpaläolithikum und Mesolithikum Teil 7: Jüngere Steinzeit – Neolithikum
DOI: 10.5281/zenodo.7935097
title: Uthmeier, Mischka (Hrsg.), Steinzeit in Bayern. Literatur Teil 7: Jüngere Steinzeit - Neolithikum

description: Thorsten Uthmeier, <br> Doris Mischka (Hrsg.) STEINZEIT <br> IN BAYERN unter Mitarbeit von <br> Christoph Mayr, Carsten Mischka, <br> Martin Nadler, Andreas Pastoors In dem Druckexemplar finden sich lediglich stark gekürzte Literaturlisten. Über ZENODO werden die kompletten Literaturlisten der einzelnen Teile zur Verfügung gestellt. Weitere Teile sind: Teil 1: Methoden Teil 2: Klima und Umwelt Teil 3: Mensch Teil 4: Ernährung Teil 5: Ältere Steinzeit – Paläolithikum Teil 6: Ausgehende Ältere und Mittlere Steinzeit - Spätpaläolithikum und Mesolithikum Teil 7: Jüngere Steinzeit – Neolithikum
DOI: 10.25921/5hvh-ff48
title: Reson7125 Water Column Sonar Data Collected During NF1404
DOI: 10.6084/m9.figshare.22905005
title: A gene regulatory network of the endothelial-to-hematopoietic transition

description: These datasets are from the generation, and subsequent analysis, of a gene regulatory network (GRN) model of the endothelial-to-hematopoietic (EHT) process. This GRN model was created through integrating RNA-seq and ATAC-seq datasets, in combination with motif analysis, to describe EHT cell types. The data here are used to construct an interactive Shiny App to allow interactive exploration of the network and underlying data.
DOI: 10.6084/m9.figshare.22905005.v1
title: A gene regulatory network of the endothelial-to-hematopoietic transition

description: These datasets are from the generation, and subsequent analysis, of a gene regulatory network (GRN) model of the endothelial-to-hematopoietic (EHT) process. This GRN model was created through integrating RNA-seq and ATAC-seq datasets, in combination with motif analysis, to describe EHT cell types. The data here are used to construct an interactive Shiny App to allow interactive exploration of the network and underlying data.
DOI: 10.34740/kaggle/dsv/5724662
title: Shopping map
DOI: 10.5517/ccdc.csd.cc1zp7b7
title: CCDC 1837659: Experimental Crystal Structure Determination

description: Related Article: Jayanta Das, Sabyasachi Ta, Noor Salam, Sudipta Das, Subhasis Ghosh, Debasis Das|2023|RSC Advances|13|13195|doi:10.1039/D3RA00702B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zp7jf
title: CCDC 1837665: Experimental Crystal Structure Determination

description: Related Article: Jayanta Das, Sabyasachi Ta, Noor Salam, Sudipta Das, Subhasis Ghosh, Debasis Das|2023|RSC Advances|13|13195|doi:10.1039/D3RA00702B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cjh2h
title: CCDC 2190586: Experimental Crystal Structure Determination

description: Related Article: You-Huan Wei, An-Zhi Tan, Zi-lu Chen, Fu-Pei Liang, Rui-Xiang Hu|2007|Hecheng Huaxue|15|561|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ckth8
title: CCDC 2191870: Experimental Crystal Structure Determination

description: Related Article: Li Zhou, Yankun Li, Shunian Li, Zhenwei Shi, Xue Zhang, Chen-Ho Tung, Zhenghu Xu|2023|Chemical Science|14|5182|doi:10.1039/D3SC00610G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cl8lv
title: CCDC 2192307: Experimental Crystal Structure Determination

description: Related Article: Li Zhou, Yankun Li, Shunian Li, Zhenwei Shi, Xue Zhang, Chen-Ho Tung, Zhenghu Xu|2023|Chemical Science|14|5182|doi:10.1039/D3SC00610G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25345/c5wp9th4g
title: MassIVE MSV000091992 - A Legionella toxin exhibits tRNA mimicry and glycosyl transferase activity to target the translation machinery and trigger a ribotoxic stress response.
title: A widespread strategy employed by pathogens to establish infection is to inhibit host cell protein synthesis. Legionella pneumophila, an intracellular bacterial pathogen and the causative organism of Legionnaires disease, secretes a subset of protein effectors into host cells that inhibit translation elongation. Mechanistic insights into how the bacterium targets translation elongation remain poorly defined. We report here that the Legionella effector SidI functions in an unprecedented way as a transfer RNA (tRNA) mimic that directly binds to and glycosylates the ribosome. The 3.1 A cryo-EM structure of SidI reveals an N-terminal domain with an inverted-L shape and surface charge distribution characteristic of tRNA mimicry and a C-terminal domain that adopts a glycosyl transferase fold that licenses SidI to utilize GDP-mannose as a sugar precursor. This coupling of tRNA mimicry and enzymatic action endows SidI with the ability to block protein synthesis with a potency comparable to ricin, one of the most powerful toxins known. In Legionella infected cells, the translational pausing activated by SidI elicits a stress response signature mimicking the ribotoxic stress response, which is activated by elongation inhibitors that induce ribosome collisions. SidI-mediated effects on the ribosome activate the stress kinases ZAKalpha and p38, which in turn drive an accumulation of the protein activating transcription factor 3 (ATF3). Intriguingly, ATF3 escapes the translation block imposed by SidI, translocates to the nucleus, and orchestrates the transcription of stress-inducible genes that promote cell death, revealing a major role for ATF3 in the response to collided ribosome stress. Taken together, our findings elucidate a novel mechanism by which a pathogenic bacterium employs tRNA mimicry to hijack a ribosome-to-nuclear signaling pathway that regulates cell fate.
DOI: 10.5517/ccdc.csd.cc2dnf7r
title: CCDC 2224164: Experimental Crystal Structure Determination

description: Related Article: Chandrakant B. Nichinde, Baliram R. Patil, Suryakant S. Chaudhari, Bhupendra P. Mali, Rajesh G. Gonnade, Anil K. Kinage|2023|RSC Advances|13|13206|doi:10.1039/D3RA00510K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dnf8s
title: CCDC 2224165: Experimental Crystal Structure Determination

description: Related Article: Chandrakant B. Nichinde, Baliram R. Patil, Suryakant S. Chaudhari, Bhupendra P. Mali, Rajesh G. Gonnade, Anil K. Kinage|2023|RSC Advances|13|13206|doi:10.1039/D3RA00510K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.20261460.v2
title: Supplemental File 4

description: Supplemental File 4. DEG list for all comparisons.
DOI: 10.6084/m9.figshare.20261460
title: Supplemental File 4

description: Supplemental File 4. DEG list for all comparisons.
DOI: 10.6084/m9.figshare.22581958
title: Supplemental Table 2

description: Table S2. Individual mouse body mass and muscle masses.
DOI: 10.6084/m9.figshare.22581958.v2
title: Supplemental Table 2

description: Table S2. Individual mouse body mass and muscle masses.
DOI: 10.6084/m9.figshare.20261475
title: Supplemental Table 3

description: Table S3. All metabolites that had an interaction effect with an FDR &lt; 0.10 for metabolomics analyses.
DOI: 10.6084/m9.figshare.20261475.v2
title: Supplemental Table 3

description: Table S3. All metabolites that had an interaction effect with an FDR &lt; 0.10 for metabolomics analyses.
DOI: 10.6084/m9.figshare.20263659
title: Supplemental Table 4

description: Table S4. Statistical outcomes from explorary one-way ANOVAs at 7 and 28 d post-SCI of the metabolomics data set.
DOI: 10.6084/m9.figshare.20263659.v1
title: Supplemental Table 4

description: Table S4. Statistical outcomes from explorary one-way ANOVAs at 7 and 28 d post-SCI of the metabolomics data set.
DOI: 10.5519/qd.54ay1mj6
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (7935 records)
DOI: 10.5517/ccdc.csd.cc2dnf9t
title: CCDC 2224166: Experimental Crystal Structure Determination

description: Related Article: Chandrakant B. Nichinde, Baliram R. Patil, Suryakant S. Chaudhari, Bhupendra P. Mali, Rajesh G. Gonnade, Anil K. Kinage|2023|RSC Advances|13|13206|doi:10.1039/D3RA00510K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dnfbv
title: CCDC 2224167: Experimental Crystal Structure Determination

description: Related Article: Chandrakant B. Nichinde, Baliram R. Patil, Suryakant S. Chaudhari, Bhupendra P. Mali, Rajesh G. Gonnade, Anil K. Kinage|2023|RSC Advances|13|13206|doi:10.1039/D3RA00510K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dxsjn
title: CCDC 2232202: Experimental Crystal Structure Determination

description: Related Article: Zachary Protich, Leah L. Lowder, Russell P. Hughes, Jimmy Wu|2023|Chemical Science|14|5196|doi:10.1039/D2SC06999G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dxskp
title: CCDC 2232203: Experimental Crystal Structure Determination

description: Related Article: Zachary Protich, Leah L. Lowder, Russell P. Hughes, Jimmy Wu|2023|Chemical Science|14|5196|doi:10.1039/D2SC06999G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dxslq
title: CCDC 2232204: Experimental Crystal Structure Determination

description: Related Article: Zachary Protich, Leah L. Lowder, Russell P. Hughes, Jimmy Wu|2023|Chemical Science|14|5196|doi:10.1039/D2SC06999G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dxsmr
title: CCDC 2232205: Experimental Crystal Structure Determination

description: Related Article: Zachary Protich, Leah L. Lowder, Russell P. Hughes, Jimmy Wu|2023|Chemical Science|14|5196|doi:10.1039/D2SC06999G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6073/pasta/f4fc762b96934b4804270c028093681f
title: GOES-R Land Surface Products at AmeriFlux and NEON, Inc. Eddy Covariance Tower Locations

description: The terrestrial carbon cycle varies dynamically over short periods that can be difficult to observe. Geostationary (“weather”) satellites like the Geostationary Environmental Operational Satellite - R Series (GOES-R) deliver near-hemispheric imagery at a ten-minute cadence, and new imagers onboard like the Advanced Baseline Imager (ABI) measure visible and near-infrared spectral bands often to estimate land surface properties and carbon dioxide flux. GOES-R data are designed for real-time dissemination and are difficult to link with eddy covariance time series of land-atmosphere carbon dioxide exchange. We compiled time-series of GOES-R land surface attributes including visible and near-infrared reflectances, land surface temperature, and downwelling shortwave radiation (DSR) at 314 ABI fixed grid pixels containing eddy covariance towers from August 2021 through 2022. By connecting observation networks that infer rapid changes to the carbon cycle, we can gain a richer understanding of the processes that control it.
DOI: 10.6084/m9.figshare.20263668
title: Supplemental Table 5

description: Table S5.Tukey's mutliple comparions post-tests of PLIER multivariate analyses.
DOI: 10.6084/m9.figshare.20263668.v2
title: Supplemental Table 5

description: Table S5.Tukey's mutliple comparions post-tests of PLIER multivariate analyses.
DOI: 10.6084/m9.figshare.20263668.v1
title: Supplemental Table 5

description: Table S5.Tukey's mutliple comparions post-tests of PLIER multivariate analyses.
DOI: 10.6084/m9.figshare.22211914
title: A quantitative study of non-linearity in storytelling

description: Data accompanying the article, "A quantitative study of non-linearity in storytelling"
DOI: 10.6084/m9.figshare.22734434.v1
title: Rehearsal_032722

description: Data set in CSV file of the Rehearsal from 03/27/22
DOI: 10.5281/zenodo.7951140
title: Applicability of an 125I-based in vivo x-ray fluorescence system in measuring skin iron

description: The complete dataset used for the paper "Applicability of an <sup>125</sup>I-based in vivo x-ray fluorescence system in measuring skin iron" published under the journal Biomedical Physics and Engineering Express
DOI: 10.6084/m9.figshare.22967495
title: GSE161918 dataset original data download link

description: Expression profiling by high throughput sequencing
DOI: 10.6084/m9.figshare.22967495.v1
title: GSE161918 dataset original data download link

description: Expression profiling by high throughput sequencing
DOI: 10.21227/1y3e-2f34
title: Dataset for the paper: An evaluation of X.509 certificate revocation and related privacy issues in the Web PKI ecosystem

description: In order to analyze the status of web domain certificates in the Web PKI, a relevant set of X.509 certificates must be built. This dataset was created based on the Alexa Top 1 Million (Top1M) List (available on 26 August 2021) containing the most visited websites. We collected the X.509 certificates for the web domains in the Alexa Top1M list with two dedicated scripts in the dataset, namely "ScriptCollectCertificates.sh" and "StartScript_CollectCertificates.sh". The downloaded certificates have been stored in a directory, namely "CollectedCertificatesAlexaList2021". Helpful scripts (in Python) for analyzing the certificates' content are found in the directory "AnalysisScripts". Support for OCSP stapling mechanism provided by the websites has been checked with the scripts "StartScript_OCSPstaplingcheck.sh" and "ScriptOCSPstaplingcheck.sh" in the dataset.
DOI: 10.5281/zenodo.7951340
title: Applicability of an 125I-based in vivo x-ray fluorescence system in measuring skin iron

description: The complete dataset used for the paper "Applicability of an <sup>125</sup>I-based in vivo x-ray fluorescence system in measuring skin iron" published under the journal Biomedical Physics and Engineering Express
description: Updated Monte Carlo dataset
DOI: 10.25500/edata.bham.00000948
title: Research data supporting PhD thesis entitled "Exploiting polymer nano-encapsulation technology for the study of insecticide targets"
DOI: 10.5281/zenodo.7951139
title: Applicability of an 125I-based in vivo x-ray fluorescence system in measuring skin iron

description: The complete dataset used for the paper "Applicability of an <sup>125</sup>I-based in vivo x-ray fluorescence system in measuring skin iron" published under the journal Biomedical Physics and Engineering Express
description: Updated Monte Carlo dataset
DOI: 10.15468/dl.356gaj
title: Occurrence Download

description: A dataset containing 20848 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cordia alliodora (Ruiz & Pav.) Oken"
 ]
}

 The dataset includes 20848 records from 380 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004452-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q7xksd
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Octomeria tridentata Lindl."
 ]
}

 The dataset includes 75 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0181829-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ekekfz
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mora ekmanii (Urb.) Britton & Rose"
 ]
}

 The dataset includes 57 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000756-171107215919691/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.