cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3949846
title: CPTu Lisbon pilot site campaign 1

description: Raw CPTu data from the field investigation works at the Lisbon pilot site of the LIQUEFACT project. Location map of the site investigation points and further details are provided in Viana da Fonseca et al. (2019). Viana da Fonseca, A., Ferreira, C., Coelho, C., Coelho, J., Quintero, J., Rios, S., Millen, M., Cordeiro, D. (2019). Chapter 3 of Deliverable D2.7 - Methodology for assessment of earthquake‐induced risk of soil liquefaction at the four European testing sites (microzonation). LIQUEFACT project, Horizon 2020 European Union funding for Research & Innovation, GA nº. 700748 (www.liquefact.eu).
DOI: 10.5281/zenodo.3949861
title: CPTu Lisbon pilot site campaign 2

description: Raw CPTu data from the field investigation works at the Lisbon pilot site of the LIQUEFACT project. Location map of the site investigation points and further details are provided in Viana da Fonseca et al. (2019). Viana da Fonseca, A., Ferreira, C., Coelho, C., Coelho, J., Quintero, J., Rios, S., Millen, M., Cordeiro, D. (2019). Chapter 3 of Deliverable D2.7 - Methodology for assessment of earthquake‐induced risk of soil liquefaction at the four European testing sites (microzonation). LIQUEFACT project, Horizon 2020 European Union funding for Research & Innovation, GA nº. 700748 (www.liquefact.eu).
DOI: 10.5281/zenodo.3949860
title: CPTu Lisbon pilot site campaign 2

description: Raw CPTu data from the field investigation works at the Lisbon pilot site of the LIQUEFACT project. Location map of the site investigation points and further details are provided in Viana da Fonseca et al. (2019). Viana da Fonseca, A., Ferreira, C., Coelho, C., Coelho, J., Quintero, J., Rios, S., Millen, M., Cordeiro, D. (2019). Chapter 3 of Deliverable D2.7 - Methodology for assessment of earthquake‐induced risk of soil liquefaction at the four European testing sites (microzonation). LIQUEFACT project, Horizon 2020 European Union funding for Research & Innovation, GA nº. 700748 (www.liquefact.eu).
DOI: 10.25345/c5rb3x
title: MassIVE MSV000085771 - Treinamento GNPS Grupo de Pesquisa em Desenvolvimento de Farmacos e Medicamentos
title: Treinamento GNPS Grupo de Pesquisa em Desenvolvimento de Farmacos e Medicamentos realizado no dia 17 de julho de 2020 em Vitoria da Conquista - BA, BRA.
DOI: 10.17034/1bc356ca-54ea-47e7-bcf5-fe0571631b49
title: TOF diagnosis of laser accelerated, high-energy protons

description: Data presented in the paper 'TOF diagnosis of laser accelerated, high-energy protons'. TOF signals acquired during the experiment described in the paper and proton energy spectra obtained on the rear and front side of the target. Comparison with RCF stacks and a Thomson Parabola Spectrometer (TP) coupled with Image Plate (IP) for validation are also reported.
DOI: 10.5281/zenodo.3416363
title: Simulated read data analysed in "Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph"

description: Simulated read data analyzed in "Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph". <strong>1) Human sequence data</strong> <strong>HO_chr11_50bp_sliding_window*fq.gz:</strong><br> All possible 50 bp reads overlapping chromosome 11 SNPs in the Human Origins dataset. Files with the word "alternate" in their filename carry the alternate allele, otherwise, they carry the reference allele. Deamination has been added into these simulated reads using gargammel (Renaud 2016) based on empirically estimated post-mortem damage in a dataset of 102 ancient genomes (Allentoft et al., 2015). <strong>2) microbial data</strong> <strong>simulation_*_s.fq.gz:</strong><br> Simulated microbial read data from a set of microbial reference genomes identified in the ancient Clovis genome (Rasmussen 2014), using gargammel.
DOI: 10.5281/zenodo.3949849
title: Becoming LTi - Dataset : Reference files and Software Containers

description: <strong>Dataset from article</strong> : Distinct waves from the hemogenic endothelium give rise to layered Lymphoid Tissue Inducer cell ontogeny <strong>Summary:</strong> During embryogenesis Lymphoid Tissue Inducer (LTi) cells are essential for lymph node organogenesis. These cells are part of the Innate Lymphoid Cell (ILC) family. Although their earliest embryonic hematopoietic origin is unclear, other innate immune cells were shown to be derived from both early hemogenic endothelium in the yolk-sac as well as the aorta-gonad-mesonephros. A proper model to discriminate between these locations was unavailable. In this study, using a new Cxcr4-CreERT2 lineage tracing model, we identify a major contribution from embryonic hemogenic endothelium, but not yolk-sac, towards the LTi progenitors. Conversely, embryonic LTi cells are replaced by hematopoietic stem cell derived cells in adult. We further show that within the fetal liver common lymphoid progenitors differentiate into highly dynamic alpha-lymphoid precursor cells, which at this embryonic stage preferentially mature into LTi precursors and establish their functional LTi cell identity only after reaching the periphery. <strong>Data </strong>: 1. SPlab_BecomingLTi_01_Reference.tar.gz : Reference files used for the data analysis. 2. SPlab_BecomingLTi_02_containers.tar.gz : Singularity and Docker images used for the data analysis.
DOI: 10.5281/zenodo.3949848
title: Becoming LTi - Dataset : Reference files and Software Containers

description: <strong>Dataset from article</strong> : Distinct waves from the hemogenic endothelium give rise to layered Lymphoid Tissue Inducer cell ontogeny <strong>Summary:</strong> During embryogenesis Lymphoid Tissue Inducer (LTi) cells are essential for lymph node organogenesis. These cells are part of the Innate Lymphoid Cell (ILC) family. Although their earliest embryonic hematopoietic origin is unclear, other innate immune cells were shown to be derived from both early hemogenic endothelium in the yolk-sac as well as the aorta-gonad-mesonephros. A proper model to discriminate between these locations was unavailable. In this study, using a new Cxcr4-CreERT2 lineage tracing model, we identify a major contribution from embryonic hemogenic endothelium, but not yolk-sac, towards the LTi progenitors. Conversely, embryonic LTi cells are replaced by hematopoietic stem cell derived cells in adult. We further show that within the fetal liver common lymphoid progenitors differentiate into highly dynamic alpha-lymphoid precursor cells, which at this embryonic stage preferentially mature into LTi precursors and establish their functional LTi cell identity only after reaching the periphery. <strong>Data </strong>: 1. SPlab_BecomingLTi_01_Reference.tar.gz : Reference files used for the data analysis. 2. SPlab_BecomingLTi_02_containers.tar.gz : Singularity and Docker images used for the data analysis.
DOI: 10.5281/zenodo.3941450
title: H&E, TTF1, immunofluorescence staining and Digital Spatial Profiling of histologically heterogeneous lung adenocarcinoma FFPE sections.

description: Please refer to the methods section of the paper for more detailed explanations. In summary: <strong>chuv_imaging_dataset_annotation.xlsx</strong>: table containing imaging assays available for each sample and histologic patterns present. <strong>he_images.zip</strong>: high-resolution images of FFPE sections stained with H&E and acquired at 20x magnification. <strong>ttf1_images.zip</strong>: high-resolution images of FFPE sections stained with TTF1 and acquired at 20x magnification. <strong>if_images.zip</strong>: high-resolution images of FFPE sections assayed with multicolor immunofluorescence (markers: CD20, CD4, CD8, CD68, Ki67) and acquired at 20x magnification. <strong>dsp_data.zip</strong>: two tables containing Digital Spatial Profiling (DSP) counts for 60 regions of interest (ROIs) x 58 markers, normalized with ERCC controls and with ERCC controls + nuclei counts; a table with annotations for each ROI. <strong>all_snapshots.zip</strong>: low-resolution snapshots of all images uploaded in this repository (H&E, TTF1, immunofluorescence - with all 5 colors together and with each color separately), with histologic pattern boundaries drawn on the images; immunofluorescence snapshots of DSP ROIs and their position on each slide. Color code for histologic pattern boundaries: grey = normal, blue = lepidic, sea green = papillary, orange = acinar, red = solid.<br> Color code for immunofluorescence channels: cyan = CD20, blue = CD4, yellow = CD8, red = CD68, green = Ki67.<br> Color code for DSP snapshots: sea green = CD3, red = CD45, yellow = CD20, blue = DAPI
DOI: 10.21227/rdmb-jm40
title: Metascape results for Prostate cancer multiomics data

description: Large p small n problem is a challenging problem in big data analytics. There are no de facto standard methods available to it. In this study, we propose a tensor decomposition (TD) based unsupervised feature extraction (FE) formalism applied to multiomics datasets, where the number of features is more than 100000 while the number of instances is as small as about 100. The proposed TD based unsupervised FE outperformed other conventional supervised feature selection methods, such as random forest, categorical regression (also known as analysis of variance, ANOVA), and penalized linear discriminant analysis when they are applied to not only multiomics datasets but also synthetic datasets. Genes selected by TD based unsupervised FE were biologically reliable. TD based unsupervised FE turned out to be not only the superior feature selection method but also the method that can select biologically reliable genes.
DOI: 10.21227/8paa-xk97
title: Metascape results for Prostate cancer multiomics data

description: Large p small n problem is a challenging problem in big data analytics. There are no de facto standard methods available to it. In this study, we propose a tensor decomposition (TD) based unsupervised feature extraction (FE) formalism applied to multiomics datasets, where the number of features is more than 100000 while the number of instances is as small as about 100. The proposed TD based unsupervised FE outperformed other conventional supervised feature selection methods, such as random forest, categorical regression (also known as analysis of variance, ANOVA), and penalized linear discriminant analysis when they are applied to not only multiomics datasets but also synthetic datasets. Genes selected by TD based unsupervised FE were biologically reliable. TD based unsupervised FE turned out to be not only the superior feature selection method but also the method that can select biologically reliable genes.
DOI: 10.5281/zenodo.3949894
title: Patient-derived and artificial ascites have minor effects on MeT-5A mesothelial cells and do not facilitate ovarian cancer cell adhesion

description: Raw data of "Patient-derived and artificial ascites have minor effects on MeT-5A mesothelial cells and do not facilitate ovarian cancer cell adhesion".
DOI: 10.5281/zenodo.3764585
title: Patient-derived and artificial ascites have minor effects on MeT-5A mesothelial cells and do not facilitate ovarian cancer cell adhesion

description: Raw data of "Patient-derived and artificial ascites have minor effects on MeT-5A mesothelial cells and do not facilitate ovarian cancer cell adhesion".
DOI: 10.26300/9krc-h052
title: Supplementary data from "Early life adversity decreases fear expression in pre-adolescence by accelerating amygdalar parvalbumin cell development"
DOI: 10.5281/zenodo.3929547
title: Data and R-Scripts for "Quality and timing of crowd-based water level class observations"

description: This are the data and the R-scripts used for the manuscript "Quality and timing of crowd-based water level class observations" accepted for publication in the journal Hydrological Processes in July 2020 as a Scientific Briefing. To run the code, just run the R-script with the name "RunThisForResults.R". Results will be written to the "Figures" and the "Results" folder.
DOI: 10.5281/zenodo.3676350
title: Data and R-Scripts for "Quality and timing of crowd-based water level class observations"

description: This are the data and the R-scripts used for the manuscript "Quality and timing of crowd-based water level class observations" accepted for publication in the journal Hydrological Processes in July 2020 as a Scientific Briefing. To run the code, just run the R-script with the name "RunThisForResults.R". Results will be written to the "Figures" and the "Results" folder.
DOI: 10.5281/zenodo.3949916
title: Diffraction images from PDB 6ZRW

description: Collected on 20090924 at SLS beamline X06DA-PXIII on a Mar225 detector
DOI: 10.5281/zenodo.3949915
title: Diffraction images from PDB 6ZRW

description: Collected on 20090924 at SLS beamline X06DA-PXIII on a Mar225 detector
DOI: 10.21227/jb75-6q95
title: MRLA search results and source code

description: The dataset includes both the software and the results for the calculation of large Minimum Redundancy Linear Arrays (MRLA, also known as sparse rulers).The software uses an exhausive search to find perfect and optimal sparse rulers. The results include all rulers up to 213 and the combination of length and marks of the rulers up to a length of 242.
DOI: 10.21227/ws89-yp15
title: Raw data of positioning experiment and tracking experiment

description: Raw data of positioning experiment and tracking experiment
DOI: 10.21227/ykhm-g928
title: Raw data of positioning experiment and tracking experiment

description: Raw data of positioning experiment and tracking experiment
DOI: 10.17632/4n34yh73fr.12
title: Sample dataset v2

description: Internal testing - Mendeley data - fake data
DOI: 10.5258/soton/d1387
title: Micro Music Media Library

description: This is the companion web page (and media/code archive) to the 'Micro Music: Exploring the Idiosyncratic Compositional Strategies Encountered in 1-Bit, Limited Memory Environments' doctoral project. This archive contains and catalogues: - All final code artefacts for ATtiny/ATmega microcontrollers, DOS and desktop platforms. - All software tools used to create the audio/visual assets. - Audio demonstrations of the above code, both recorded from microcontroller and generated in software. - Image and video visualisations of audio routines. - Miscellaneous extras, such as scores, 3D models and PCB Gerber data.
DOI: 10.5281/zenodo.3948092
title: SARS-CoV-2 detection dogs - a pilot study

description: The outstanding olfactory acuity of canines led us to consider whether dogs are able to reliably detect the odour of respiratory diseases associated with a SARS-CoV-2 infection in saliva or tracheobronchial secretion of hospitalized COVID-19 patients. Furthermore, we examined if SARS-CoV-2 detection dogs could provide an appropriate screening method for the human virus.The aim of this data publication is to provide the data acquired in the controlled, randomized and double-blinded pilot study `Scent dog identification of SARS-CoV-2 infection’ (submitted to BMC Infectious Diseases).
DOI: 10.21227/cpfk-0416
title: Raw data of positioning experiment and tracking experiment

description: Raw data of positioning experiment and tracking experiment
DOI: 10.5281/zenodo.3950036
title: SARS-CoV-2 detection dogs - a pilot study

description: The outstanding olfactory acuity of canines led us to consider whether dogs are able to reliably detect the odour of respiratory diseases associated with a SARS-CoV-2 infection in saliva or tracheobronchial secretion of hospitalized COVID-19 patients. Furthermore, we examined if SARS-CoV-2 detection dogs could provide an appropriate screening method for the human virus.The aim of this data publication is to provide the data acquired in the controlled, randomized and double-blinded pilot study `Scent dog identification of SARS-CoV-2 infection’ (submitted to BMC Infectious Diseases).
DOI: 10.5281/zenodo.3829076
title: Vitamin D and Calcium in Children 0-36 months: A Scoping Review of Health Outcomes

description: We conducted a scoping review to describe the extent (size), range (variety), and nature (characteristics) of the evidence on published primary research and systematic reviews since 2008 relating to vitamin D or calcium intake (or biomarkers of intake) in relation to any health outcome in generally healthy infants and children less than 3 years old. The list of these set-aside studies with extracted data is available in Supplemental Data File 1. Data extracted from interventional studies are included in Supplemental Data File 2. Data extracted from observational studies are included in Supplemental Data File 3.
description: https://www.tandfonline.com/doi/full/10.1080/07315724.2020.1774822
DOI: 10.5281/zenodo.3829075
title: Vitamin D and Calcium in Children 0-36 months: A Scoping Review of Health Outcomes

description: We conducted a scoping review to describe the extent (size), range (variety), and nature (characteristics) of the evidence on published primary research and systematic reviews since 2008 relating to vitamin D or calcium intake (or biomarkers of intake) in relation to any health outcome in generally healthy infants and children less than 3 years old. The list of these set-aside studies with extracted data is available in Supplemental Data File 1. Data extracted from interventional studies are included in Supplemental Data File 2. Data extracted from observational studies are included in Supplemental Data File 3.
description: https://www.tandfonline.com/doi/full/10.1080/07315724.2020.1774822
DOI: 10.5281/zenodo.3950038
title: Data archive for the journal article "Black Carbon Aerosols in the Lower Free Troposphere are Heavily Coated in Summer but Largely Uncoated in Winter at Jungfraujoch in the Swiss Alps"

description: Data archive for figures accompanying the journal article "Black carbon aerosols in the lower free troposphere are heavily coated in summer but largely uncoated in winter at Jungfraujoch in the Swiss Alps". In 2020 this article was accepted for publication in the journal <em>Geophysical Research Letters</em>. Data are uploaded in the form of Igor Pro experiment files (.pxp).
DOI: 10.5281/zenodo.3950037
title: Data archive for the journal article "Black Carbon Aerosols in the Lower Free Troposphere are Heavily Coated in Summer but Largely Uncoated in Winter at Jungfraujoch in the Swiss Alps"

description: Data archive for figures accompanying the journal article "Black carbon aerosols in the lower free troposphere are heavily coated in summer but largely uncoated in winter at Jungfraujoch in the Swiss Alps". In 2020 this article was accepted for publication in the journal <em>Geophysical Research Letters</em>. Data are uploaded in the form of Igor Pro experiment files (.pxp).
DOI: 10.22024/unikent/01.01.123
title: EGG3D PRINT FILES

description: File required for the creation of 3D printed decoy turtle eggs.
DOI: 10.5286/isis.e.rb1990062-1
title: Structure of ferrite perovskites
DOI: 10.15468/kxpzdm
title: A new species of Mops (Molossidae) from Pemba Island, Tanzania

description: This dataset contains the digitized treatments in Plazi based on the original journal article Stanley, William T. (2008): A new species of Mops (Molossidae) from Pemba Island, Tanzania. Acta Chiropterologica 10 (2): 183-192, DOI: 10.3161/150811008X414773
DOI: 10.6073/pasta/7b3df681774e45523e37f47b9c744902
title: Hubbard Brook Experimental Forest: Hourly soil oxygen, moisture and temperature across soil depths and an elevation gradient in the Bear Brook watershed; 2018-2019

description: Denitrification is potentially a significant process of soil nitrogen removal from the Hubbard Brook Experimental Forest (HBEF) ecosystem. Its magnitude and variation can depend on physical conditions within the soil, particularly oxygen concentration, moisture, and temperature. This dataset contains continuous measurement of soil oxygen, moisture and temperature near the biogeochemical reference Watershed 6 at (HBEF). Data were collected from Campbell Scientific CR1000 dataloggers with sensors installed at 3 depths, each at a soil horizon transition and at an hourly time interval. The timeframe of the dataset is 1 year starting in July 2018 and ending in July 2019. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.
DOI: 10.7910/dvn/mxq8o2/yi1dy8
title: pipeline_webinar_analysis-for replication.do

description: :unav
DOI: 10.7910/dvn/mxq8o2/gltrxh
title: pipeline_webinar_analysis-deidentified.tab

description: Replication dataset for main statistical analysis
DOI: 10.7910/dvn/mxq8o2/a8de1w
title: readme.txt

description: readme text file
DOI: 10.7910/dvn/mxq8o2/8rjpke
title: pipeline_webinar_analysis-for replication.log

description: :unav
DOI: 10.7910/dvn/mxq8o2/mikxrw
title: pipelines_poweranalysis.Rmd

description: :unav
DOI: 10.7910/dvn/mxq8o2/hte6ht
title: pipelines_fullvar.tab

description: :unav
DOI: 10.5066/p98i4ep7
title: Hawaii Volcanoes National Park stable isotope values from Hawaii forest birds 2012

description: Blood and feathers were collected from Hawaii forest birds (Apapane and Hawaii Amakihi) in high elevation forest to assess evidence for altitudinal movement. Feathers, red blood cells and plasma were analyzed for hydrogen, carbon, and nitrogen stable isotope ratios, and these were used to infer changes in elevation and diet over time. For each species, at one of 3 sites, isotope values from one or more tissues and isotopes are listed.
DOI: 10.5281/zenodo.3950085
title: Data for the publication "Developing a Cloud Scheme with Prognostic Cloud Fraction and Two Moment Microphysics for ECHAM-HAM"

description: This repository contains the data for the paper: "Muench, S., and Lohmann, U.: Developing a Cloud Scheme with Prognostic Cloud Fraction and Two Moment Microphysics for ECHAM-HAM. Journal of Advances in Modeling Earth Systems. In review." Each netCDF-file contains the model data to reproduce the figures in our paper. Figure 1-3 are conceptual schematics so there is not data for these figures.
DOI: 10.5281/zenodo.3587985
title: Data for the publication "Developing a Cloud Scheme with Prognostic Cloud Fraction and Two Moment Microphysics for ECHAM-HAM"

description: This repository contains the data for the paper: "Muench, S., and Lohmann, U.: Developing a Cloud Scheme with Prognostic Cloud Fraction and Two Moment Microphysics for ECHAM-HAM. Journal of Advances in Modeling Earth Systems. In review." Each netCDF-file contains the model data to reproduce the figures in our paper. Figure 1-3 are conceptual schematics so there is not data for these figures.
DOI: 10.17632/749tbh7jnt.2
title: ISCIENCE-D-20-00790 dataset

description: Raw data for article (ISCIENCE-D-20-00790).
DOI: 10.17632/bb9htnsw6k.2
title: Does one belt one road initiative inhibit the formation of zombie firms

description: This study selects the data of China's A-share listed firms from 2012 to 2017 based on the proposal of the OBOR initiative. The financial data in this study are from the CSMAR and WIND databases.
DOI: 10.17632/24kkg2hctg.1
title: EDXRF Raw data Sonora obsidian

description: 566 geochemical raw data, corresponding to 133 specimens of geological and archaeological obsidian artifacts mostly, including flaked and ground stone, were determined by an X-Ray Fluorescence XL3t series NITON Analyzer from Thermo Fisher Scientific with support of the software Thermo Scientific™ Niton Data Transfer (NDT™). The analysis had an experimental stage to generate a final analytical protocol, based in a repetition of at least 3 analyzes per obsidian sample, procuring 120 counts per second, under the SOIL or TestAllGeo condition programs of Niton.