cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/9lq-ps5-1p9
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hel-5xh-3c0
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/p93-vnc-1dv
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ryl-e4d-cp0
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24438427.v1
title: Data and analysis files for "Patterns of genetic and epigenetic diversity across a range expansion in the white-footed mouse (Peromyscus leucopus)"

description: Data and analysis files for Rubi et al. (in press). "Patterns of genetic and epigenetic diversity across a range expansion in the white-footed mouse (Peromyscus leucopus)." Integrative Organismal Biology.
DOI: 10.3535/kld-j47-lwj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/cd3fxgssc5
title: A systems immunology study comparing innate and adaptive immune responses in adults to COVID-19 mRNA and adenovirus vectored vaccines. 

description: Supplementary data for the Ryan et al. A systems immunology study comparing innate and adaptive immune responses in adults to COVID-19 mRNA and adenovirus vectored vaccines. Cell Reports Medicine. 2023
DOI: 10.17632/gvtmx6thwp
title: Data about the normality and homogeneity using software SPSS Statistic version 25.0

description: Data about the normality and homogeneity using software SPSS Statistic version 25.0
DOI: 10.3535/c0w-agp-d0j
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pxn-3ew-6tc
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/s8z-nvc-rys
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14393015.v1
title: Phenotypic traits data

description: Phenotypic traits data for apple GWAS
DOI: 10.3535/5j0-ga4-pay
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/g6ncgg956v
title: Elegent—An elastic event generator

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract Although elastic scattering of nucleons may look like a simple process, it presents a long-lasting challenge for theory. Due to missing hard energy scale, the perturbative QCD cannot be applied. Instead, many phenomenological/theoretical models have emerged. In this paper we present a unified implementation of some of the most prominent models in a C++ library, moreover extended to account for effects of the electromagnetic interaction. The library is complemented with a number of utilities. ... Title of program: Elegent Catalogue Id: AERT_v1_0 Nature of problem Monte-Carlo simulation of elastic nucleon-nucleon collisions Versions of this program held in the CPC repository in Mendeley Data AERT_v1_0; Elegent; 10.1016/j.cpc.2013.11.016
DOI: 10.17632/pw7y7wtsg2
title: Stress-sensitive Neural Circuits Change the Gut Microbiome via Duodenal Glands

description: Rare date for cell submission entitled "Stress-sensitive Neural Circuits Change the Gut Microbiome via Duodenal Glands"
DOI: 10.3535/3gw-bve-xjm
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/h85-b18-3px
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sth-apd-142
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.5644501.v1
title: Scientometric indicators for Brazilian research on High Energy Physics, 1983-2013

description: ABSTRACT This article presents an analysis of Brazilian research on High Energy Physics (HEP) indexed by Web of Science (WoS) from 1983 to 2013. Scientometric indicators for output, collaboration and impact were used to characterize the field under study. The results show that the Brazilian articles account for 3% of total HEP research worldwide and that the sharp rise in the scientific activity between 2009 and 2013 may have resulted from the consolidation of graduate programs, the increase of the funding and of the international collaboration as well as the implementation of the Rede Nacional de Física de Altas Energias (RENAFAE) in 2008. Our results also indicate that the collaboration patterns in terms of the authors, the institutions and the countries confirm the presence of Brazil in multinational Big Science experiments, which may also explain the prevalence of foreign citing documents (all types), emphasizing the international prestige and visibility of the output of Brazilian scientists. We concluded that the scientometric indicators suggested scientific maturity in the Brazilian HEP community due to its long history of experimental research.
DOI: 10.3535/b8y-1hk-vlx
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/l9j-t9q-lzc
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/d8x-nt2-fgd
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.7676450.v1
title: Phosphorus extraction by Mehlich 1, Mehlich 3 and Anion Exchange Resin in soils with different clay contents

description: ABSTRACT Phosphorus extractors (P) Mehlich 1 (M-1), Mehlich 3 (M-3) and Anion Exchange Resin (RTA) show sensitivity to soil clay content. Also, the use of equations for conversion of available P extracted by M-3 into equivalent values of M-1 may not be adequate for a set of contrasting soils. The objective of this work is to evaluate the influence of clay content on the extraction of P by M-1, M-3 and RTA, as well as to evaluate the effectiveness of using the equation proposed by Local Soil Fertility Committee to convert M-3 contents to equivalent values of M-1. It was selected 301 farmers’ soil samples from the soil test laboratory at Santa Catarina State University, distributed in four classes of clay: 0-20, 21-40, 41-60 and &gt; 60% clay. The samples were prepared and the available P was extracted by M-1, M-3 and RTA. M-3 and RTA extracted 12 and 11% more P than M-1, M-1 extracted less P than M-3 and RTA in sandy soils and extracted more P than others in clayey soils. The equation suggested by Local Soil Fertility Committee for converting M-3 values to equivalents in M-1 underestimated P values by up to 24%. Therefore, it is proposed to use the equation P-M1eq (mg dm-3) = (P-M3 / (1.38-0.01 * Arg)). The evaluated methods present sensitivity to soil clay content, and the classification of P availability should be performed by texture bands.
DOI: 10.17632/fkyv2hgtjx
title: Artificial intelligence helps diagnose oral potentially malignant disorders

description: Oral potentially malignant disorders (OPMDs) can lead to oral cancer, which is one of the most common cancers worldwide. Prevention is crucial in the avoidance of malignant transformations of OPMDs. Artificial intelligence (AI) provides a new and non-invasive tool for analyzing medical data, such as patient data, radiological images and clinical photographs. These AI-based tools can help in the decision-making process. However, histological examination is still the gold standard for diagnosing OPMDs. Our research aimed to investigate the diagnostic accuracy of artificial intelligence on intraoral photographs of patients with OPMDs. On November 10, 2023, a systematic search was conducted on five major databases: MEDLINE, Embase, Cochrane Library, Scopus, and Web of Science. From the available data, we performed a quantitative analysis for sensitivity, specificity, positive predictive value (PPV), negative predictive value (NPV), diagnostic odds ratio (DOR), positive likelihood ratio (LR+), and negative likelihood ratio (LR-) and calculated their 95% confidence intervals (CI). Our search resulted in 6 eligible articles, in which 898 images out of a total of 4,046 were tested using AI-based architectures. In five of the six studies, at least two AI models were investigated. Among the eligible articles, two independent authors (DH, ÁF) collected data on decision making in the OPMD classification of the artificial intelligence-supported tool and filled out a customized data extraction sheet designed for this review. Our data analysis units covered sensitivity, specificity, and confusion matrix. In addition, the following information was collected: first author, publication year, study period, teaching-, validation-, testing sample size, teaching settings (epochs, batch size, and learning rate), training methods, and augmentation types. Information (number of layers and parameters) on the AI-based models used was collected from the internet if not provided in the article. Some data about the tested AI-based architectures were collected from the internet if not included in the article. The sources for this information were https://github.com and https://pytorch.org.
DOI: 10.17632/x6nnxygn48
title: Fostamatinib, a spleen tyrosine kinase inhibitor, exerts excellent anti-inflammatory activity via inhibiting STAT1/3 signaling pathways

description: Transcriptome sequencing data of fostamatinib
DOI: 10.3535/0tn-5c9-pf3
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/2ql-8dm-sbl
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24471793.v1
title: Non-targeted metabolome analysis and comparison of metabolites from the filaments and fermentation broth of a Penicillium loci from the rhizosphere of Peucedanum praeruptorum Dunn

description: 100 μL of sample was transferred to an EP tube. After the addition of 300 μL of extract solution (methanol, containing isotopically-labelled internal standard mixture), the samples were vortexed for 30 s, sonicated for 10 min in ice-water bath, and incubated for 1 h at -40 ℃ to precipitate proteins. Then the sample was centrifuged at 12000 rpm(RCF=13800(×g),R= 8.6cm) for 15 min at 4 ℃. The resulting supernatant was transferred to a fresh glass vial for analysis. The quality control (QC) sample was prepared by mixing an equal aliquot of the supernatants from all of the sample.LC-MS/MS analyses were performed using an UHPLC system (Vanquish, Thermo Fisher Scientific) with a UPLC HSS T3 column (2.1 mm × 100 mm, 1.8 μm) coupled to Orbitrap Exploris 120 mass spectrometer (Orbitrap MS, Thermo). The mobile phase consisted of 5 mmol/L ammonium acetate and 5 mmol/L acetic acid in water (A) and acetonitrile (B). The auto-sampler temperature was 4 ℃, and the injection volume was 2 μL. The Orbitrap Exploris 120 mass spectrometer was used for its ability to acquire MS/MS spectra on information-dependent acquisition (IDA) mode in the control of the acquisition software (Xcalibur, Thermo). In this mode, the acquisition software continuously evaluates the full scan MS spectrum. The ESI source conditions were set as following: sheath gas flow rate as 50 Arb, Aux gas flow rate as 15 Arb, capillary temperature 320 ℃, full MS resolution as 60000, MS/MS resolution as 15000 collision energy as 10/30/60 in NCE mode, spray Voltage as 3.8 kV (positive) or -3.4 kV (negative), respectively.The raw data were converted to the mzXML format using ProteoWizard and processed with an in-house program, which was developed using R and based on XCMS, for peak detection, extraction, alignment, and integration. Then an in-house MS2 database (BiotreeDB) was applied in metabolite annotation. The cutoff for annotation was set at 0.3.
DOI: 10.17632/6zxhcdsf7x
title: Scope and financial impact of unpublished data and unused samples among U.S. academic and government researchers

description: These are raw survey data that accompany the upcoming publication:

Scope and financial impact of unpublished data and unused samples among U.S. academic and government researchers

Emma C Bowers*1, Jimena Stephenson1, Melissa Furlong2, Kenneth S. Ramos3, 

1. LabPair, Inc., Tucson, AZ
2. University of Arizona Mel and Enid Zuckerman College of Public Health, 
Department of Community, Environment, and Policy Tucson, Arizona 85724, United States
3. Texas A&M Institute of Biosciences and Technology, 
Center for Genomic and Precision Medicine, Houston, TX

Abstract:
Unpublished data and unused samples are common byproducts of research activity, but little is known about the scope and economic impact of their disuse. To fill this knowledge gap, we collected self-reported anonymous survey responses from 301 academic and government scientists from randomly selected institutions.  Respondents estimated that they published ~60% of their data and 95% had unpublished data.  Of those collecting specimens, 60% stored unused samples.  Systemic and logistical issues were identified as major contributory factors. The median cumulative self-reported estimated value of unused resources per researcher was $28,857, with life science ($36k) and government ($109k) researchers reporting the costliest assets. Using NSF headcounts, we estimated that the current cumulative value of unused resources at universities is approximately $6.2 billion, about 7% of the current annual R&D budget.  These findings provide actionable information that can be used by decision makers to reduce obstacles that undermine scientific progress and productivity.
DOI: 10.17632/r4wjcwyzkj
title: Critical roles of translation initiation and RNA uridylation in endogenous retroviral expression and neural differentiation in pluripotent stem cells

description: These are uncropped images of western blotting used in the paper entitled "Critical roles of translation initiation and RNA uridylation in endogenous retroviral expression and neural differentiation in pluripotent stem cells." by Takahashi et al. published in Cell Reports.
DOI: 10.17632/x9wms6dbck
title: 10.1016/j.heliyon.2024.e27621

description: raw data of "Goat milk extracellular vesicles: Separation comparison of natural carriers for theragnostic application" doi 10.1016/j.heliyon.2024.e27621
DOI: 10.3535/1cz-hpc-sem
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ba2-6mq-57q
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13398458.v1
title: raw data

description: Illusion Type Gamer Type Gender 1 Expanding 1 NVGP 1 Male 2 Rotating 2 Tweener 2 Female 3 AVGP
DOI: 10.6084/m9.figshare.17789714.v3
title: Decadal variations in radiocarbon in dissolved inorganic carbon (DIC) along a transect in the western North Pacific Ocean

description: This dataset provides details for DIC and Δ<sup>14</sup>C-DIC results for water samples collected in 2019 from a north-south transect, P1 (13-40°N, 150°E), in the northwestern NP Ocean
DOI: 10.6084/m9.figshare.21077857.v1
title: Script from "Comparing Quantile Regression Spline analyses and Supervised Machine Learning for environmental quality assessment at coastal marine aquaculture installations"

description: This zip archive contains data and R code used in the manuscript 'Comparing Quantile Regression Spline analyses and Supervised Machine Learning for environmental quality assessment at coastal marine aquaculture installations' by Kleopatra Leontidou, Verena Rubel, Thorsten Stoeck. <br> It contains a data folder with the datasets used for Quantile Regression Spline analyses and Supervised Machine Learning, R code for the Quantile Regression Splines Analysis and for the production of the figures shown in the results section and R code for the Supervised Machine Learning analysis. <br> Description of data files: Two 'asv table' datasets were used (Norway_asvtable.csv, Scotland_asvtable.csv), one of which included all samples from seven Norwegian salmon farms (n = 138) and one including all samples (n=92) from seven Scottish salmon farms. The 'asv table' datasets include as rows the Amplicon Sequence Variants (ASVs), as columns the samples (corresponding to the Sample column in the 'metadata' datasets) and as cell values the number of sequence reads. The 'metadata' datasets (Norway_metadata.csv, Scotland_metadata.csv) include as rows the samples and as columns information about the samples. The data folder includes also data from Supervised Machine Learning analysis (table_of_predictions_relab_norway.csv, table_of_predictions_relab_scotland.csv, varimp_mean_nor.csv, varimp_mean_sco.csv). <br>
DOI: 10.3535/qh3-23a-f01
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zjd-tkf-4s6
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bxx-n3y-sll
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gel-33l-dtm
title: Holoptychiidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/zwrcvtjn6n
title: A missing link in the evolution of dasytine soft-winged flower beetles from Cretaceous Charentese amber (Coleoptera: Melyridae)

description: Full-resolution image stack (TIFF) and model in STL format.
DOI: 10.3535/dm6-4sv-4mv
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kss-hcx-ak2
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/468-ry4-fzy
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gf0-01v-6ct
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24171612.v1
title: DNA sequences_Tardigrades ASV

description: DNA sequences of ASVs classified as Tardigrades according to blast agains PR2 database.
DOI: 10.6084/m9.figshare.25374697.v5
title: Genomic Structural Variation and Transcriptomic Analyses Reveal Candidate Genes for Hybrid Sterility in Cattle-Yak_Supplementary Data

description: Yak females are crossed with taurine bull to produce cattle-yak that shows hybrid vigor. However, whereas the F1 hybrid females are fertile, the males exhibit complete sterility, therefore hinders the fixation of desired traits through hybridization. Currently, the genetic mechanisms associated with hybrid sterility have not been determined. We characterized the transcriptomes of yak and cattle-yak testes at several key developmental stages and examined the distribution of structural variants (SVs) among the differentially expressed genes (DEGs). We found that a proportion of the DEGs in cattle-yak at each stage contained SVs in their regulatory or coding regions, indicating the potential role of genetic variations in affecting gene expression; moreover, we selected the candidate genes <i>ESCO2</i> (establishment of sister chromatid cohesion N-acetyltransferase 2) and <i>BRDT</i> (bromodomain testis associated) for expression validation. The expression of X-linked genes was particularly dysregulated at different developmental stages, revealing the contribution of the X chromosome to hybrid sterility in large animals. Data from backcross generation (BC1) animals demonstrated that spermatogenic defects and dysregulated gene expression were partially recovered. Taken together, the findings of these experiments provide insights into the potential function of genetic structural variation in hybrid infertility.
DOI: 10.17632/vkmx8fmcvg
title: Publications on the Financial reform research

description: All 370 publications on the topic of the Financial reform on Scopus for bibliometric analysis!
DOI: 10.3535/nwd-q3a-t2j
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zmw-2xy-ae3
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/rmvd7h593d
title: Digital resilience_Lebanon2023

description: Data was collected to answer the following research questions: What are the factors affecting digital resilience in the post-Covid area? More specifically, it aims to explore the extent to which workers' productivity and performance during remote working is a critical factor and positively contributed to foster their post-COVID resilience. Factors such as digital self-efficacy, adaptability, and perceived organizational support were also explored to assess their potential impact on either digital resilience or perceived online workers productivity. Data was collected through a survey launched between July and September 2023 and administered online by mail and social media. 204 respondents. 
All variables are latent variables and were measured through item wordings and based on a five-points Lickert scale. Items and item wordings are as follows:
-Post-COVID Digital resilience (DR): 
After the Covid-19 pandemic, if another crisis occurs and forces me back to remote working, I do not anticipate any difficulties adjusting to the new working conditions
After the Covid-19 pandemic, if another crisis occurs and forces me back to remote working, I can maintain a similar or higher level of productivity
After the COVID-19 pandemic, if another crisis occurs and forces me back to remote working, I can meet all requirements easily
Adaptability (Adapt)
During Covid-19 and the work-from-home context, it was easy for me to cope with the new situation
During COVID-19 and the work-from-home context, I successfully accommodated the new working condition
During Covid-19 and the work-from-home context, I had no major difficulty adapting to the new working condition
Perceived Remote Work Productivity (RWE)
During Covid-19 and remote working, I could maintain a high level of productivity
During COVID-19 and remote working, I could perform efficiently the required tasks
During Covid-19 and remote working, I did not feel any tension at work
Digital self-efficacy (DSE)
I feel proficient at using digital technologies
I have the necessary skills to use digital technologies
I can easily perform any task using digital technologies
I have profound skills in using digital tools to collaborate with others
Perceived organizational support (POR)
The managers in my organization encourage all employees to embrace digital transformation as a chance
The managers in my organization promote digital transformation with full effort
The managers in my organization provide employees with all the resources to be able to derive the best benefits from the digital transformation
For successful digital transformation, my organization has the appropriate organizational structure
Several demographic control variables were also collected such as : age, gender, marital status, number of children, highest educational degree, role/position in the company, perception of task complexity, perception of tasks performed digitaly before lockdown and current country of residence.