cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.hp4b3/1
title: DataSet_ParameterValues_AG_6Dec2017

description: The data set has occupancy values and local extinction probability values for 88 grids/sites of 15km X 15km each, for snow leopard, blue sheep, Asiatic ibex and wild prey (blue sheep and ibex combined), across an area of 14,616 sq.km in the Himalaya and Trans-Himalaya mountains of Himachal Pradesh, India.
DOI: 10.5061/dryad.j3f5j/1
title: Supplementary Materials

description: Table S1 & S2; Figures S1-S19
DOI: 10.5061/dryad.m5r87/1
title: Colony counts for invaders and communities

description: Data file including all of the colony counts for each of the different timepoints, communities and replicates, formatted for direct import into R. See README file for definitions of the columns.
DOI: 10.5061/dryad.m5r87/2
title: Operational Taxonomic Unit table

description: OTU table, concatenated by genus, non-normalised, with singletons. The first column is matched to the first column in the InvasionData.csv file to align composition and invasion data.
DOI: 10.5061/dryad.n1066/2
title: Representative original spectra
DOI: 10.5061/dryad.n311f/1
title: Leachs_stormpetrels_mitochondroalControlRegion_and_outgroup

description: Mitochondrial control region sequences for all Leach's storm-petrels used in our study (including from Hydrobates leucorhoa leucorhoa, H. l. chapmani, H. socorroensis, H. cheimomnestes, and outgroup sequences from H. castro).
DOI: 10.5061/dryad.n311f/2
title: Leachs_stormpetrel_microsatellite_data

description: Microsatellite data from all birds used in our study (including from H. leucorhoa leucorhoa, H. l. chapmani, H. socorroensis and H. cheimomnestes).
DOI: 10.5061/dryad.n6k3n/1
title: Life-history characteristics of European birds

description: We created a dataset for 499 bird species breeding in Europe and 34 key life-history traits represented in 85 variables. As a primary source of information we used the comprehensive handbook the Birds of the Western Palearctic. The traits inform about species specific mean values. We did not record values for different geographical subspecies, i.e. the trait value always represents average for the whole breeding area of particular species.
DOI: 10.5061/dryad.pc1b6/7
title: Verhoeven et al._Generational shift_FigS1_SadoTejo

description: Data on resighting proportion in Portugal (Figure S1B)
DOI: 10.5061/dryad.pc1b6/8
title: Verhoeven et al._Generational shift_Juvenile Survival

description: Data for subsequent juvenile survival analysis
DOI: 10.5061/dryad.q3b45/8
title: BAM_Ploting_Function

description: R script with functions to plot BAM diagrams
DOI: 10.5061/dryad.q5s51/1
title: DryadPlosOneUdayappan

description: GraphPad Prism file containing data belonging to Udayappan et al, Intestinal Ralstonia pickettii augments glucose intolerance in obesity, MS #: PONE-D-17-01669
DOI: 10.1371/journal.pone.0181693
DOI: 10.5061/dryad.rp2js/1
title: Appendix S1_Table1_Snake_microhabitat_data

description: Microhabitat data described as fossorial and non-fossorial along with references for 1256 species of snakes
DOI: 10.5061/dryad.rp2js/2
title: Appendix_S2_Table2_Lizard_microhabitat_data

description: Microhabitat data described as fossorial and non-fossorial compiled for 822 species of lizards from the GARD database (http://www.gardinitiative.org/data.html).
DOI: 10.5061/dryad.rp2js/3
title: Appendix_S3_SupportingInfo

description: Supporting information containing results of model selection and parameter estimation from the BiSSE, HiSSE and STRAPP analyses carried out on the snake and lizard microhabitat data.
DOI: 10.5061/dryad.rp2js/4
title: Appendix_S4_supplementary methods

description: The file describes the methods used to evaluate the effect of tip ratio bias on HISSE along with the results of the analyses.
DOI: 10.5061/dryad.s3t53/1
title: anisogamy

description: Fortran 90 code for population genetic simulation of the evolution of anisogamy.
DOI: 10.5061/dryad.s3t53/2
title: oogamy

description: Fortran 90 code for population genetic simulation of the evolution of oogamy.
DOI: 10.5061/dryad.tm041/1
title: Strauss.Eco.Evo

description: R script for all analyses presented in main text and appendix.
DOI: 10.5061/dryad.tm041/2
title: trait.data

description: trait for Daphnia genotypes
DOI: 10.5061/dryad.tm041/3
title: d.data

description: Density data from mesocosm experiment
DOI: 10.5061/dryad.tm041/4
title: g.data

description: Genotype data from mesocosm experiment
DOI: 10.17632/cznxg7xk32.1
title: Data for: Simulation and experiment of the cutting characteristics for single cBN-WC-10Co fiber

description: research data
DOI: 10.17632/wzvgmc5s9z.1
title: Data for: Rapid Conceptual Design and Analysis of Spatial Flexure Mechanisms

description: The Excel file contains comparison of DAS3D results with Abaqus FE simulations. Accuracy of single sheet and wire flexures of different dimensions are investigated under various loading cases. The effect of dividing sheet and wire flexures into multiple segments is also investigated. Performance of single element hinge (circular, elliptic and filleted type) is compared with Abaqus FEA. Accuracy of three complex flexure mechanisms, double parallelogram, 3D sheet stage and 3D wire stage, compared to Abaqus FE simulations are studied in individual worksheets.
DOI: 10.5061/dryad.0dq86/1
title: PONE-D-17-27542R1

description: Data on adherence to continuous positive airway pressure (CPAP) therapy in 695 patients with obstructive sleep apnea
DOI: 10.5061/dryad.0n1hb08/1
title: Microsatellite_GenAlEX_datafile

description: This datafile includes the microsatellite genetic data in GenALEx format used in the paper
DOI: 10.5061/dryad.124fp/2
title: Wilderness_maps_R.1

description: We present the most up-to-date temporally inter-comparable maps of global terrestrial wilderness areas and the Last of the Wild. These are in .shp format, and were created in ArcGIS.
DOI: 10.5061/dryad.132g8/3
title: Land cover, nest density and land cover density maps

description: These files contain maps of land-cover, nest density for Apis dorsata, agroforest density, forest fragment density and heterogeneity index in our study zone (Kodagu district, South India) in ASCII format.
DOI: 10.5061/dryad.23fg0/1
title: Ottaviani et al 2017_Ecol Evol_bark thickness data

description: Bark thickness data were collected in the field for 14 plant species, from seven granite outcrops across an aridity gradient in Southwestern Australia, in 2012. In each study site, 3-4 species were sampled. For each species 10 individuals were sampled (in each outcrop). For each plant sampled, 5 different bark thickness measurements were collected, then averaged.
DOI: 10.5061/dryad.2m614/1
title: Echocardiographic examinations of Duchenne muscular dystrophy

description: Follow-up data of echocardiographic examinations of Japanese Duchenne muscular dystrophy patients
DOI: 10.5061/dryad.4ff5n/1
title: LIP data

description: Data from the LIP experiment.
DOI: 10.5061/dryad.4ff5n/2
title: VIP data

description: Data from the VIP experiment.
DOI: 10.5061/dryad.4ts31/4
title: CND-TCNQ3
DOI: 10.5061/dryad.4ts31/5
title: CND-TCNQ4
DOI: 10.5061/dryad.4ts31/6
title: CND-TCNQ5
DOI: 10.5061/dryad.53qb3/2
title: Data from: Developmental experience with anthropogenic noise hinders adult mate location in an acoustically signalling invertebrate

description: A csv data file containing data required to recreate the tables and figures in Gurule-Small and Tinghitella "Developmental experience with anthropogenic noise hinders adult mate location in an acoustically signalling invertebrate". Data were analyzed in JMP Pro 13.0.
DOI: 10.5061/dryad.5bv7p/1
title: 28S_pipeline

description: This compressed folder includes documentation and files for the fungal 28S rRNA gene sequence processing pipeline described in this manuscript.
DOI: 10.5061/dryad.5bv7p/2
title: taxonomic_summary

description: This compressed folder contains a file with the taxonomic assignment output produced by our fungal 28S sequence processing pipeline for each sample.  We indicate the taxa which we selected for subsequent relative abundance analyses with symbols; these are described in the README file also contained in this folder.
DOI: 10.5061/dryad.5h8k3/1
title: DZCU 8021.1 (1.5 weeks)

description: Specimen DZCU8021 from Charles University, Prague. Specimen represents a single ~1.5 week old individual from a litter of four preserved pouch young. Zipped tiff stack with included reconstruction parameters
DOI: 10.5061/dryad.5h8k3/2
title: NMV C5755 (4.5 weeks)

description: Specimen C5755 from Museums Victoria, Melbourne, Australia. Specimen represents a single ~4.5 week old individual from a litter of three preserved pouch young. Zipped tiff stack with included reconstruction parameters
DOI: 10.5061/dryad.5h8k3/3
title: TMAG A931 (5.25 weeks)

description: Specimen A931 from Tasmanian Museum and Art Gallery. Specimen represents a single ~5.25 week old individual from a litter of two preserved pouch young. Zipped DiCOM stack with included reconstruction parameters
DOI: 10.5061/dryad.5h8k3/4
title: TMAG A930 (9 weeks)

description: Specimen A930 from Tasmanian Museum and Art Gallery, Tasmania, Australia. Specimen represents a single ~9 week old preserved pouch young. Zipped DiCOM stack with included reconstruction parameters
DOI: 10.5061/dryad.5h8k3/5
title: AMS P762 (12 weeks)

description: Specimen P762 from Australia Museum, New South Wales, Australia. Specimen represents a single ~12 week old preserved pouch young. Zipped DiCOM stack with included reconstruction parameters
DOI: 10.5061/dryad.5h8k3/6
title: TMAG A934 (non thylacine)

description: Misidentified pouch young specimen A934 from Tasmanian Museum and Art Gallery, Tasmania, Australia. Specimen is a Dasyurid pouch young, though the exact species unknown. Zipped DiCOM stack with included reconstruction parameters
DOI: 10.5061/dryad.5p414/10
title: Root microbiome R script

description: Code used for all bioinformatic and analytical steps.
DOI: 10.5061/dryad.5p414/8
title: Host plant drought biomass

description: Biomass data associated with individual plants in the watering manipulation experiment. Species - refers to host plant species (see phenotypic trait data for key to species code). Block - refers to experimental block. Root weight - weight of standardized root sample used for microbiome characterization (mg). AGB - aboveground biomass (mg); BGB - belowground biomass (mg). Note, not all individuals in this dataset used in the analysis.
DOI: 10.5061/dryad.5p414/9
title: Plant soil feedback (PSF) between host plant species

description: See SI Appendix Materials and Methods for a description of the PSF experiment. Focal species - host plant species that served as the focal plant in the PSF experiment. Soil C Species - host plant species that served as the soil conditioning plant in the PSF experiment. Contrast - pair of focal and soil conditioning plant species. Biomass ratio - plant soil feedback measured using total biomass. AGB ratio - plant soil feedback measured using only aboveground biomass. BGB ratio - plant soil feedback measured using only belowground biomass. Mean Gen Dist X - patristic (phylogenetic) distance between focal and soil conditioning host plant species. Mean Fun Dist X - phenotypic distance between focal and soil condition host plant species. Endo Wu W - the average weighted UniFrac distance between endosphere compartments of focal and soil conditioning host plant species. Rhizo Wu W - the average weighted UniFrac distance between endosphere compartments of focal and soil conditioning host plant species. Endo Uu W - the average unweighted UniFrac distance between endosphere compartments of focal and soil conditioning host plant species. Rhizo Uu W - the average unweighted UniFrac distance between endosphere compartments of focal and soil conditioning host plant species.
DOI: 10.5061/dryad.631q1/1
title: Landscape-scale maps of structural quality derived from UAS SfM at the Camas study site, Idaho, USA

description: Unmanned aerial system (UAS) structural quality maps derived from structure from motion (SfM) photogrammetry at the Camas study site in Idaho, USA. The dense point cloud was produced in Agisoft PhotoScan, and then height filtered with the BCAL LiDAR Tools to create a canopy height model (5-cm pixel resolution). Separate maps of maximum vegetation height, volume, and canopy cover were then produced in ArcGIS at 1-m pixel resolution.
DOI: 10.5061/dryad.631q1/2
title: Landscape-scale maps of structural quality derived from UAS SfM at the Cedar Gulch study site, Idaho, USA

description: Unmanned aerial system (UAS) structural quality maps derived from structure from motion (SfM) photogrammetry at the Cedar Gulch study site in Idaho, USA. The dense point cloud was produced in Pix4D, and then height filtered with the BCAL LiDAR Tools to create a canopy height model (5-cm pixel resolution). Separate maps of maximum vegetation height, volume, and canopy cover were then produced in ArcGIS at 1-m pixel resolution.
DOI: 10.5061/dryad.631q1/3
title: UAS-TLS plant-scale structural metrics

description: Plant-scale comparison of unmanned aerial system (UAS) structure from motion (SfM) and terrestrial laser scanning (TLS) structural metrics (shrub height, shrub volume, and canopy cover) at two study sites in Idaho, USA.
DOI: 10.5061/dryad.631q1/5
title: UAS-Field patch-scale structural metrics

description: Patch-scale comparison of unmanned aerial system (UAS) structure from motion (SfM) structural metrics and field-based measurements (shrub height, shrub volume, and canopy cover) at two study sites in Idaho, USA.
DOI: 10.5061/dryad.6620j/1
title: Molossus molossus tropical torpor data

description: Respirometry and free-ranging experiment data recording the heart rate (fH, beats per minute), body temperature (Tb, °C), and ambient temperature (Ta, °C) for Molossus molossus in Gamboa, Panama. Body mass  is given in grams. Mass-specific energy expenditure (Watts per gram) and field metabolic rate (FMR, kJ per day) were measured in flow through respirometry only.
DOI: 10.5061/dryad.723m1.3
title: Data from: MycoDB, a global database of plant response to mycorrhizal fungi
DOI: 10.5061/dryad.723m1.3/1.3
title: MycoDB_version3
DOI: 10.5061/dryad.723m1.3/2.3
title: FungalTree_version1
DOI: 10.5061/dryad.723m1.3/3.3
title: PlantTree_version1
DOI: 10.5061/dryad.723m1.3/4.3
title: README
DOI: 10.5061/dryad.7f140/6
title: NHANES Directly Measured BMI data

description: Directly measured NHANES data are stored in NHANES DM.csv in CSV format. This file contains four columns: year t, BMI in year t, age in year t, and gender. Note: We associate NHANES data from survey 1999-2000 with t = 1999, from survey 2001-2002 with t = 2001, and so on.
DOI: 10.5061/dryad.7fb7r/1
title: smr.pumas.captures.ID

description: Camera trapping data for pumas that could be individually identified.  Occasion refers to the trapping occasion.  SiteID lists the grid and camera number.
DOI: 10.5061/dryad.7fb7r/2
title: smr.pumas.captures.NOID

description: Camera trapping data for pumas that could not be individually identified.  Occasion refers to the trapping occasion.  SiteID lists the grid and camera number.
DOI: 10.5061/dryad.7fb7r/3
title: smr.pumas.traps.south

description: Location of cameras in south grid
DOI: 10.5061/dryad.81r60/1
title: Data from: State-dependent judgement bias in Drosophila: evidence for evolutionarily primitive affective processes
DOI: 10.5061/dryad.8b905/1
title: Table A-Fig2

description: Area distribution of endothelial cell clusters: the table displays the area distribution of endothelial cell clusters from the binary images, which were identified using the Analyze Particles. The distribution of the Cluster Numbers as a function of the log(A) was obtained using 12 bins. In other to illustrate the emergence of a largest cluster in the system the table displays the area in mm^2 [Area (mm^2)] and the log of the area in mm^2 [log(A)] for a control embryo at:
(a)	initial stage 0h,
(b)	middle stage 7h,
(c)	final Stage 15h.
DOI: 10.5061/dryad.8b905/2
title: Table B-Fig4

description: Statistical analysis of binary patterns: characterize the spatio-temporal self-organization of cell clusters forming the vascular network for three embryos in each group. 
(a)	Mean vessel density of endothelial cell clusters, 𝜌, with the Std. Error as a function of time.
(b)	Mean number of cell clusters, N, with the Std. Error as a function of time.
(c)	The average largest cluster density, 𝜌^LC, with the Std. Error as a function of time.
(d)	The largest cluster density, 𝜌^LC for a single embryo as a function of time.
DOI: 10.5061/dryad.8b905/3
title: Table C-Fig5

description: The node degree distributions: obtained from three embryos in each group. The symbol (**) indicates the statistical difference of the distributions from the initial stage at t=0h, which have p&lt;0.05 calculated by Smirnov-Kolmogorov test.
(a)	The mean node degree distributions for control group with Std. Error.
(b)	The mean node degree distributions for Avastin-treated group with  Std Error.
DOI: 10.5061/dryad.8b905/4
title: Table D-Fig6

description: Network descriptors:   network metrics obtained for three embryos in each group, the tables displays the average in each group with the respective Std. error. 
(a)	The mean node degree as a function of time measured in a complete vascular network.
(b)	The coefficient of assortativity measured on the largest cluster as a function of time.
(c)	The average clustering coefficient measured on the largest cluster as a function of time.
(d)	The shortest path length measured on the largest cluster as a function of time.
DOI: 10.5061/dryad.8b905/5
title: Table E-Fig7

description: The fraction of nodes in the largest cluster: it is obtained for a single embryo, and the average obtained for three embryos in each group. It is quantified as the number of the nodes in the largest cluster divided for the total number of nodes in the network. The tables displays the values for a single embryo and  the average for the two groups with the respective Std. error. 
(a)	Fraction of nodes in the largest cluster as a function of time for a single embryo.
(b)	Fraction of nodes in the largest cluster as a function of time for three embryos in each group with the Std. error.
DOI: 10.5061/dryad.8t201/1
title: Oikos 04527 Dryad Depository

description: Zip file containing code used to run and analyze simulations, as well as raw and processed data files.
DOI: 10.5061/dryad.b7n6h/1
title: Raw data of in vitro experiments

description: Artificial pitchers (Vials) are setup with two treatment conditions (Treatment = X. beaveri or control) in the laboratory. Each artificial pitcher is supplied with varying numbers of T. tenax pupae over time (moz). Amount of ammonium (NH4 mmol) in artificial pitchers is determined at 3-week intervals over the course of the experiment, until X. beaveri emerge (Emergence; 1=yes, 0=no). Vials belonging to the same Pair number were commenced on the same day, and supplied with the same number of mosquito pupae over the course of the experiment.
DOI: 10.5061/dryad.cj8qn/1
title: Oviposition latency data for geometrid moths (Geometridae)

description: Oviposition latency data measured in the lab from field collected Geometridae females for Estonian and Ugandan species.
DOI: 10.5061/dryad.hc4bj/2
title: Fig. S2
DOI: 10.5061/dryad.hc4bj/3
title: Fig. S3
DOI: 10.5061/dryad.hc4bj/4
title: Supplementary Table 1
DOI: 10.5061/dryad.km87231/1
title: Floral measurements of nine Pulmonaria species

description: This data file presents floral measurements performed in a wide number of populations of nine different Pulmonaria species across Europe.
DOI: 10.5061/dryad.n618q/1
title: Table of character codings for Cabindachelys landanensis and Angolachelys mbaxi

description: This table shows the character codings for Cabindachelys landanensis, including both the holotype skull and referred carapace material, as well as modified codings for Angolachelys mbaxi. Character numbering corresponds to that of the original matrix in Cadena and Parham (2015).
DOI: 10.5061/dryad.n618q/2
title: TNT file for phylogenetic analysis of Testudinata

description: This TNT file contains a modified version of the matrix presented by Cadena and Parham (2015) with 155 taxa and 256 characters. The matrix includes character codings for both the holotype skull and the carapace material referred to Cabindachelys landanensis.
DOI: 10.5061/dryad.n618q/3
title: Strict consensus tree from analysis of Testudinata

description: Strict consensus of 50,000 MPTs from the analysis of Testudinata using a modified version of the matrix in Cadena and Parham (2015).
DOI: 10.5061/dryad.q1n97/1
title: Photographs of all the nests used in experiment 1

description: Photographs of all the nests used in experiment 1, compressed as a .zip file. Folder numbers refer to the date of the experiment. Labels within each photograph provide more information.
DOI: 10.5061/dryad.q1n97/2
title: Photographs of all the nests used in experiment 2

description: Photographs of all nests evaluated in experiment 2. File names are dates. More information about each photograph is provided in a label within the photograph.
DOI: 10.5061/dryad.15fn7/1
title: Raw data of phenotypic, genetic and epigenetic variation

description: Raw data of phenotypic, genetic (AFLP) and epigenetic (MSAP) variation
DOI: 10.5061/dryad.1kn03/1
title: supporting data for all experiments

description: Includes the raw data for behavioural observations, survival data and immune measures.
DOI: 10.5061/dryad.23sv1/1
title: AGE_mat

description: Ages of captive breeding female Adelie penguins (in years) at SeaWorld San Diego from 1992 to 2015. Each column represents a year, each row represents a different individual. Negative values for a given individual/year indicate that this female had not yet been born (to avoid NAs in the matrix). These data are used in the hierarchical model in Youngflesh et al. Journal of Animal Ecology.
DOI: 10.5061/dryad.2d0g778/1
title: R script for the model
DOI: 10.5061/dryad.2d0g778/2
title: Transition values for healthy branches (2011-2015)

description: All values were estimated from digitized images of individual coral colonies. Abbreviations: Coral (individual colony identifier), Total (total number of branches), Total nv (total number of healthy branches), nv_to_nv, nv_to_nh, nv_to_hy (number of healthy branches that transitioned to healthy, unhealthy or hydroid-colonized, respectively, Impact (total visible impact proportion), Size (total coral size (m)), Site, Year (imaging year).
DOI: 10.5061/dryad.2d0g778/3
title: Transition values for unhealthy branches (2011-2015)

description: All values were estimated from digitized images of individual coral colonies. Abbreviations: Coral (individual colony identifier), Total (total number of branches), Total nh (total number of unhealthy branches), nh_to_nv, nh_to_nh, nh_to_hy (number of unhealthy branches that transitioned to healthy, unhealthy or hydroid-colonized, respectively, Impact (total visible impact proportion), Size (total coral size (m)), Site, Year (imaging year).
DOI: 10.5061/dryad.2d0g778/4
title: Transition values for branches colonized by hydroids (2011-2015)

description: All values were estimated from digitized images of individual coral colonies. Abbreviations: Coral (individual colony identifier), Total (total number of branches), Total hy (total number of branches colonized by hydroids), hy_to_nv, hy_to_nh, hy_to_hy (number of hydroid-colonized branches that transitioned to healthy, unhealthy or hydroid-colonized, respectively, Impact (total visible impact proportion), Size (total coral size (m)), Site, Year (imaging year).
DOI: 10.5061/dryad.2d0g778/5
title: Number of branches in each state in 2011

description: Number of branches in each state in 2011 (initial conditions) for every coral colony at MC 294, MC 297 and MC 344.
DOI: 10.5061/dryad.2d0g778/6
title: Coral size in 2011

description: Size (m) of every coral colony at MC 294, MC 297 and MC 344.