cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.58119/ulg/uowrsl/8km9e9
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DOI: 10.5281/zenodo.7783477
title: Dataset related to article: Cell-envelope growth of Gram-negative bacteria proceeds independently of cell-wall synthesis

description: Single-cell data for the article: Enno R. Oldewurtel, Yuki Kitahara, Baptiste Cordier, Richard Wheeler, Gizem Özbaykal, Elisa Brambilla, Ivo Gomperts Boneca, Lars D. Renner, and Sven van Teeffelen Cell-envelope growth of Gram-negative bacteria proceeds independently of cell-wall synthesis. EMBO J (2023)
DOI: 10.5281/zenodo.7783476
title: Dataset related to article: Cell-envelope growth of Gram-negative bacteria proceeds independently of cell-wall synthesis

description: Single-cell data for the article: Enno R. Oldewurtel, Yuki Kitahara, Baptiste Cordier, Richard Wheeler, Gizem Özbaykal, Elisa Brambilla, Ivo Gomperts Boneca, Lars D. Renner, and Sven van Teeffelen Cell-envelope growth of Gram-negative bacteria proceeds independently of cell-wall synthesis. EMBO J (2023)
DOI: 10.58119/ulg/uowrsl/7aa3in
title: mp-8041_output

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DOI: 10.5281/zenodo.7740918
title: Potential of Mean Force (PMFs) for Zerovalent Iron (Fe (100-110-111)) NanoParticles

description: The data is potential of mean force for three fcc configurations of zero valent iron, (100), (110) and (111) nano particles interacting with side chain analugos of 22 different amino acids that are the building blocks of the proteins. We used adaptive Well-Tempered Metadynamics method to calculate the adsorption free energies that has previously been described for measuring the adsorption of the biomolecules for TiO2 and Ag. GROMACS and plumed softwares were used to carry out the simulations and the CHARMM-GUI/Nanomaterial Modeler was used create the iron slabs. The system was solvated using the original form of TIP3 water model . It was then neutralized by NaCl regarding the charge of the whole system. In the MD calculation the energy of the system has been minimized by Verlet particle-based cut-off scheme using charge groups and steepest gradient method for 1000 steps. The system was equilibrated under constant pressure, particles and temperature (300 K) condition (NPT) using Berendsen weak coupling or 1.0 ns. The component of the pressure tensor were set to 1.0 bar. The thermostat and the barostat for the relaxation time was 1.0 ps. The system underwent another more unbiased equilibrations for 10 ns in the NVT ensemble conditions. The Nose-Hoover thermostat’s relaxation time constant for the NVT ensemble was 5 ps. The cut-off distance was set to 1.0 nm for the VdW short range interactions. In the metadynamics biased simulation, the Surface Separation Distance (SSD) describes the reaction coordinates. This SSD measures the minimum distance of the center-of-mass (COMs) of the SCA Rmol and the surface atoms ri along the z coordinate.
DOI: 10.5281/zenodo.7740917
title: Potential of Mean Force (PMFs) for Zerovalent Iron (Fe (100-110-111)) NanoParticles

description: The data is potential of mean force for three fcc configurations of zero valent iron, (100), (110) and (111) nano particles interacting with side chain analugos of 22 different amino acids that are the building blocks of the proteins. We used adaptive Well-Tempered Metadynamics method to calculate the adsorption free energies that has previously been described for measuring the adsorption of the biomolecules for TiO2 and Ag. GROMACS and plumed softwares were used to carry out the simulations and the CHARMM-GUI/Nanomaterial Modeler was used create the iron slabs. The system was solvated using the original form of TIP3 water model . It was then neutralized by NaCl regarding the charge of the whole system. In the MD calculation the energy of the system has been minimized by Verlet particle-based cut-off scheme using charge groups and steepest gradient method for 1000 steps. The system was equilibrated under constant pressure, particles and temperature (300 K) condition (NPT) using Berendsen weak coupling or 1.0 ns. The component of the pressure tensor were set to 1.0 bar. The thermostat and the barostat for the relaxation time was 1.0 ps. The system underwent another more unbiased equilibrations for 10 ns in the NVT ensemble conditions. The Nose-Hoover thermostat’s relaxation time constant for the NVT ensemble was 5 ps. The cut-off distance was set to 1.0 nm for the VdW short range interactions. In the metadynamics biased simulation, the Surface Separation Distance (SSD) describes the reaction coordinates. This SSD measures the minimum distance of the center-of-mass (COMs) of the SCA Rmol and the surface atoms ri along the z coordinate.
DOI: 10.58119/ulg/uowrsl/rnkj79
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DOI: 10.15468/dl.v4dpbn
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maesa cambodiana C.M.Hu & J.E.Vidal"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052235-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tf8eu4
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mesanthemum variabile Kimp."
 ]
}

 The dataset includes 21 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052236-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eqadar
title: Occurrence Download

description: A dataset containing 4492866 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sitta canadensis Linnaeus, 1766"
 ]
}

 The dataset includes 4492866 records from 165 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052218-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.99xwtg
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maesa carolinensis Mez"
 ]
}

 The dataset includes 140 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052238-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x6xgp6
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melhania denhamii R.Br. ex Denham & Clapp."
 ]
}

 The dataset includes 18 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052237-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fjkt2x
title: Occurrence Download

description: A dataset containing 458 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mallotus subulatus Müll.Arg."
 ]
}

 The dataset includes 458 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052239-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ctgvn
title: Occurrence Download

description: A dataset containing 824 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mesembryanthemum aitonis Jacq."
 ]
}

 The dataset includes 824 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052240-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ghk5qd
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melhania didyma Eckl. & Zeyh."
 ]
}

 The dataset includes 145 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052241-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g58gtx
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maesa cauliflora Kaneh. & Hatus."
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052242-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6krfyx
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mallotus sumatranus (Miq.) Airy Shaw"
 ]
}

 The dataset includes 53 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052243-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.shje79
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mesembryanthemum amabile (Gerbaulet & Struck) Klak"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052245-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hueabf
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melhania erythroxylon (G.Forst.) R.Br."
 ]
}

 The dataset includes 50 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052246-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eujux9
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mallotus taoyuanensis C.L.Peng & L.H.Yan"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052248-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6q74g7
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maesa cavinervis C.Chen"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052247-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.namv8t
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mesembryanthemum amplectens L.Bolus"
 ]
}

 The dataset includes 40 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052250-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gmqfq7
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melhania fiherenanensis Arènes"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052251-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2tb8f3
title: Occurrence Download

description: A dataset containing 207 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maesa chisia Buch.-Ham. ex D.Don"
 ]
}

 The dataset includes 207 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052253-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.