cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.bg79cnp80
title: Data from: Depth dependent dive kinematics suggest cost-efficient foraging strategies by tiger sharks

description: Tiger sharks Galeocerdo cuvier are a keystone, top-order predator that are
 assumed to engage in cost-efficient movement and foraging patterns. To
 investigate the extent to which patterns of oscillatory diving by these
 animals conform to these patterns, we used a biologging approach to model
 their cost of transport. High-resolution biologging tags with tri-axial
 sensors were deployed on 21 tiger sharks at Ningaloo Reef for durations of
 5-48 hours. Using overall dynamic body acceleration (ODBA) as a proxy for
 energy expenditure, we modelled the cost of transport of oscillatory
 movements of varying geometries in both horizontal and vertical planes for
 tiger sharks. The cost of horizontal transport was minimized by descending
 at the lowest possible angle and ascending at an angle of 5-14°, meaning
 that vertical oscillations conserved energy compared to swimming at a
 level depth. Reduction of vertical travel costs occurred at steeper
 angles. The absolute dive angles of tiger sharks increased between inshore
 and offshore zones, presumably to reduce the cost of transport while
 continuously hunting for prey in both benthic and surface habitats.
 Oscillatory movements of tiger sharks conform to strategies of
 cost-efficient foraging, and shallow inshore habitats appear to be an
 important habitat for both hunting prey and conserving energy while
 travelling.
description: Tiger sharks (n=22) were captured and tagged at Ningaloo Reef,
 Western Australia in April and May 2017 following the methods described in
 Andrzejaczek <i>et al</i>. In brief, tiger
 sharks were captured using baited drumlines and secured alongside a 5.8 m
 vessel with the leader and tailrope. Either a CATS (Customized Animal
 Tracking Solutions, Australia) Diary Tag (dimensions and weight with
 clamp: 15 x 4 x 6 cm and 300 g) or CATS Cam Tag (23 x 4 x 7 cm and 500 g)
  were then clamped to the dorsal fins for periods of 7-48 hours (see table
 S1). All tags were equipped with tri-axial accelerometers, magnetometers
 and gyroscopes, and sensors for depth, temperature and light. All sensors
 recorded continuously at 20 Hz. In addition, 14 of the 22 deployments
 recorded video at pre-programmed hours of the day for a maximum of six
 hours per deployment. The tags detached from the clamp in the days
 following tagging, and were recovered using a handheld VHF receiver
 operated from a vessel. Datasets are in the raw format
 downloaded from the tags. Deployment notes can be found in the
 supplementary information of the manuscript. 
description: Raw biologging data collected from 21 tiger sharks at Ningaloo
 Reef in 2017. Datasets labelled by each individual
 tiger shark i.e. TS1 and TS2 are tiger sharks 1 and 2
 respectively.
DOI: 10.25338/b8dc81
title: Data from: Addressing incomplete lineage sorting and paralogy in the inference of uncertain salmonid phylogenetic relationships

description: Recent and continued progress in the scale and sophistication of
 phylogenetic research has yielded substantial advances in knowledge of the
 tree of life; however, segments of that tree remain unresolved and
 continue to produce contradicting or unstable results. These poorly
 resolved relationships may be the product of methodological shortcomings
 or of an evolutionary history that did not generate the signal traits
 needed for its eventual reconstruction. Relationships within the euteleost
 fish family Salmonidae have proven challenging to resolve in molecular
 phylogenetics studies in part due to ancestral autopolyploidy contributing
 to conflicting gene trees. We examine a sequence capture dataset from
 salmonids and use alternative strategies to accommodate the effects of
 gene tree conflict based on aspects of salmonid genome history and the
 multispecies coalescent. We investigate in detail three uncertain
 relationships: (1) subfamily branching, (2) monophyly
 of Coregonus, and (3) placement of Parahucho.
 Coregoninae and Thymallinae are resolved as sister taxa, although
 conflicting topologies are found across analytical strategies. We find
 inconsistent and generally low support for the monophyly
 of Coregonus, including in results of analyses with the
 most extensive dataset and complex model. The most consistent placement
 of Parahucho is as sister lineage of Salmo.
description: The DNA sequence data was generated with sequence capture
 targeting 500 ultra-conserved element loci from
 actinopterygiian fishes.
DOI: 10.25338/b88p7h
title: Data from: Cooling cows efficiently with sprinklers: physiological responses to water spray

description: Dairies in the United States commonly cool cattle with sprinklers mounted
 over the feed bunk that intermittently spray the cows’ backs. These
 systems use potable water—an increasingly scarce resource—but there is
 little experimental evidence about how much is needed to cool cows or
 about droplet size, which is thought to affect hair coat penetration. Our
 objectives were to determine how sprinkler flow rate and droplet size
 affect physiological measures of heat load in a hot, dry climate, and to
 evaluate cooling effectiveness against water use. The treatments were an
 unsprayed control and 6 soaker nozzles that delivered four 3-min spray
 applications of 0.4, 1.3, or ≥4.5 L/min (with 2 droplet sizes within each
 flow rate) and resulting in 30 to 47% of spray directly wetting each cow.
 Data were collected from high-producing lactating Holsteins (n = 19)
 tested individually in ambient conditions (air temperature = 31.2 ± 3.8°C,
 mean ± standard deviation). Cows were restrained in headlocks for 1 h and
 received 1 treatment/d for 3 d each, with order of exposure balanced in a
 crossover design. When cows were not sprayed, physiological measures of
 heat load increased during the 1-h treatment. All measures responded
 rapidly to spray: skin temperature decreased during the first water
 application, and respiration rate and body temperature did so before the
 second. Droplet size had no effect on cooling, but flow rate affected
 several measures. At the end of 1 h, 0.4 L/min resulted in lower
 respiration rate and skin temperature on directly sprayed body parts
 relative to the control but not baseline values, and body temperature
 increased to 0.2°C above baseline. When 1.3 or ≥4.5 L/min was applied,
 respiration rate was lower than the control and decreased relative to
 baseline, and body temperature stayed below baseline for at least 30 min
 after treatment ended. The treatment that best balanced cooling
 effectiveness against water usage was 1.3 L/min: although ≥4.5 L/min
 reduced respiration rate relative to baseline by 4 more breaths/min than
 1.3 L/min did (−13 vs. −9 breaths/min, respectively), each additional
 liter of water decreased this measure by only ≤0.1 breaths/min (≤1% of the
 total reduction achieved using 1.3 L/min). We found similar water
 efficiency patterns for skin temperature and the amount of time that body
 temperature remained below baseline after treatment ended. Thus, when
 using this intermittent spray schedule in a hot, dry climate, applying at
 least 1.3 L/min improved cooling, but above this, additional physiological
 benefits were relatively minor.
description: See methods in associated publication
description: Data were collected from the University of California-Davis dairy
 facility on 19 lactating cows in 2011. Variables are defined in the “key”
 tab of each Excel file and missing values are indicated with "."
 and explained.
DOI: 10.5061/dryad.47d7wm39s
title: Cellulose nanocrystals/graphene oxide composite for the adsorption and removal of levofloxacin hydrochloride antibiotic from aqueous solution

description: Residual antibiotics in water are often persistent organic pollutants. The
 purpose of this study was to prepare a cellulose nanocrystals/graphene
 oxide composite (CNCs-GO) with a three-dimensional structure for the
 removal of the antibiotic levofloxacin hydrochloride (Levo-HCl) in water
 by adsorption. The Scanning Electron Microscope (SEM), Fourier Transform
 Infrared (FT-IR), Energy dispersive spectroscopy (EDS), X-ray
 Photoelectron Spectroscopy (XPS) and other characterization methods were
 used to study the physical structure and chemical properties of the
 CNCs-GO. The three-dimensional structure of the composite material
 rendered a high surface area and electrostatic attraction, resulting in an
 increased adsorption capacity of the CNCs-GO for Levo-HCl. Based on the
 Box–Behnken design, the effects of different factors on the removal of
 Levo-HCl by the CNCs-GO were explored. The composite material exhibited
 good antibiotic adsorption capacity, with a removal percentage exceeding
 80.1% at an optimal pH of 4, adsorbent dosage of 1.0 g L⁻1, initial
 pollutant concentration of 10.0 mg L⁻1, and contact time of 4 h. The
 adsorption isotherm was well fitted by the Sips model, and kinetics
 studies demonstrated that the adsorption process conformed to a
 quasi-second-order kinetics model. Consequently, the as-synthesized
 CNCs-GO demonstrate good potential for the effective removal of
 antibiotics such as levofloxacin hydrochloride from aqueous media.
description: single-factor experiment Material
 characterization Adsorption kinetics
 Adsorption isotherm Response surface
 method
description: Use origin, design-expert10.0, xpsprak, jade
DOI: 10.5061/dryad.ffbg79crj
title: Data from: Girth increment changes in response to soil water availability in lowland dipterocarp forest in Borneo: an individualistic time-series analysis

description: Time-series data offer a way of investigating the causes driving
 ecological processes as phenomena. To test for possible differences in
 water relations between species of different forest structural guilds at
 Danum (Sabah, NE Borneo), daily stem girth increments (gthi), of 18 trees
 across six species were regressed individually on soil moisture potential
 (SMP) and temperature (TEMP), accounting for temporal autocorrelation (in
 GLS-arima models), and compared between a wet and a dry period. The
 best-fitting significant variables were SMP the day before and TEMP the
 same day. The first resulted in a mix of positive and negative
 coefficients, the second largely positive ones. An adjustment for
 dry-period showers was applied. Interactions were stronger in dry than wet
 period. Negative relationships for overstorey trees can be interpreted in
 a reversed causal sense: fast transporting stems depleted soil water and
 lowered SMP. Positive relationships for understorey trees meant they took
 up most water at high SMP. The unexpected negative relationships for these
 small trees may have been due to their roots accessing deeper water
 supplies (if SMP was inversely related to that of the surface layer), and
 this was influenced by competition with larger neighbour trees. A
 tree-soil flux dynamics manifold may have been operating. Patterns of mean
 diurnal girth variation were more consistent among species, and
 time-series coefficients were negatively related to their maxima. Expected
 differences in response to SMP in the wet and dry periods did not clearly
 support a previous hypothesis differentiating drought and non-drought
 tolerant understorey guilds. Trees within species showed highly individual
 responses when tree size was standardized. Data on individual root systems
 and SMP at several depths are needed to get closer to the mechanisms that
 underlie the tree-soil water phenomena in these tropical forests.
 Neighborhood stochasticity importantly creates varying local environments
 experienced by individual trees.
description: Daily stem-girth increment changes (gthi) were recorded using
 electronic dendrobands on 18 selected trees within a permanent rain forest
 dynamics plot at Danum Valley, Sabah, Malaysia (NE Borneo) in 2007-2010.
 Soil moisture potential (SMP) and logger temperature (TEMP) were recorded
 simultaneously. After detailed preliminary data analysis, near complete
 time series were possible for a long wet period (550 days) and a shorter
 dry period (almost 100 days). On this basis, an extensive statistical
 time-series analysis of gthi was conducted at the level of each individual
 tree. The within-day resolution of recording also allowed a diurnal
 analysis of relative stem girth changes. Full details of methodology and
 data analysis are presented in the paper.
description: Please refer to the 'README_dandendE.txt' file.
DOI: 10.5061/dryad.p5hqbzkmj
title: Environmental and Salmo trutta complex aboundance data in the Tiber River basin (central Italy)

description: Salmonids inhabiting Mediterranean rivers are of particular concern for
 biodiversity conservation, as they are threatened by various stressors,
 including habitat alterations, overfishing, climate change, and
 introgressive hybridisation with alien species. In the Tiber River basin
 (Central Italy), genetic introgression phenomena of the native Salmo
 cettii with the non-native Salmo trutta hinder the separate analysis of
 the two species, which are both included in the S. trutta complex. Little
 is known about the factors currently limiting the trout populations in
 this area, particularly with respect to climate change. With the intention
 of filling this gap, the aims of the current study were to: i) quantify
 changes in the climate, and ii) analyse the distribution, status, and
 ecology of trout populations, in the context of changing abiotic
 conditions over the last decades. Fish stock assessments were carried out
 by electrofishing during three census periods (1998-2004, 2005-2011, and
 2012-2018) at 129 sites. The trend over time of meteorological parameters
 provided evidence for increased air temperature and decreased rainfall.
 Multivariate analysis of trout densities and environmental data
 highlighted the close direct correlation of trout abundance with water
 quality, altitude, and current speed. Climate-induced effects observed
 over time in the sites where trout were sampled have not yet led to local
 extinctions or distribution shifts, indicating a marked resilience of
 trout, probably due to the buffering effect of intrinsic population
 dynamics. Decreasing body conditions over time and unbalanced age
 structures support the hypothesis that variations in hydraulic regime and
 water temperature could overcome these compensatory effects, which may
 lead to a severe decline in trout populations in the near future. In a
 climate change context, habitat availability plays a key role in the
 distribution of cold-water species, which often do not have the
 possibility to move upstream to reach their thermal optimum because of
 water scarcity in the upper river stretches.
DOI: 10.5061/dryad.9kd51c5dk
title: Targeting the glycan of receptor binding domain with jacalin as a novel approach to developing treatment against COVID-19

description: In silico analysis revealed that a lectin, jacalin from jackfurit seeds
 recognize glycosylated region of receptor binding domain (RBD) of
 COVID-19. Jacalin binding induce conformational changes in RBD and
 significantly affect its interaction with human angiotensin-converting
 enzyme 2. The result may open up exploration of lectins based strategies
 against COVID-19.In silico analysis revealed that a lectin, jacalin from
 jackfurit seeds recognize glycosylated region of receptor binding domain
 (RBD) of COVID-19. Jacalin binding induce conformational changes in RBD
 and significantly affect its interaction with human angiotensin-converting
 enzyme 2. The result may open up exploration of lectins based strategies
 against COVID-19.
description: protein-protein interaction was done through
 https://alcazar.science.uu.nl/services/HADDOCK2.2/haddockserver-prediction.htmlhttps://alcazar.science.uu.nl/services/HADDOCK2.2/haddockserver-prediction.html The recently solved structure of SARS-CoV-2 RBD complexed with ACE2 receptor (PDB ID: 6LZG) was used in our study. PDB ID: 1M26 of jacalin was used in the analysis. The interacting residues were identified using Discovery Studio Visualization software and was also conformed using RING web server. The secondary structure information for models was calculated using the web server ‘2Struc’, which uses DSSP (Dictionary of Secondary Structure of Proteins) The structure of hydroxychloroquine (HCQ) drug is obtained from the pubchem database (PubChem ID: 3652). Molecular docking of HCQ was performed using AutoDock Vina with help of PyRx tool<b>,</b> and LigPlot+ program was used to identify the interacting residues between jacalin and HCQ.
description:   <b>Active residues (Input given in
 HADDOCK)</b>   
 <b>First
 molecule</b> <b>Second
 molecule</b> 
 RBD
 vs Jacalin complex RBD: 343,342,339,338,368 Jacalin: 1,47,121,122,123,125,78,80 RBD(N343G) vs Jacalin RBD: 343,342,339,338,368 Jacalin: 1,47,121,122,123,125,78,80 Jacalin-RBD complex vs hACE2 hACE2: 31,19,24,34,41,42,353,83,30,38,35,82 RBD : 484,475,487,453,500,446,449,498,496,486,505,417,493,502,489
DOI: 10.5281/zenodo.18395411
title: THEORETICAL FOUNDATIONS OF THE CONCEPT OF ARTISTIC THOUGHT IN THE PERIOD OF INDEPENDENCE

description:  This scientific article provides a comprehensive analysis of the formation, development and theoretical foundations of the concept of artistic thought during the period of independence of Uzbekistan. The conceptual changes that occurred in the literary process during the years of independence, the impact of creative freedom, awareness of national identity, historical memory and spiritual values on artistic thought are covered from a scientific and theoretical point of view. The article explains the philosophical, aesthetic and literary-critical interpretations of the concept of artistic thought using the example of the literature of the period of independence. It also reveals the continuity and differences between the legacy of Jadidism, the literature of the Soviet period and the period of independence. During the research, it is scientifically proven that new paradigms of artistic thought are being formed in contemporary Uzbek literature.
DOI: 10.5281/zenodo.18395412
title: THEORETICAL FOUNDATIONS OF THE CONCEPT OF ARTISTIC THOUGHT IN THE PERIOD OF INDEPENDENCE

description:  This scientific article provides a comprehensive analysis of the formation, development and theoretical foundations of the concept of artistic thought during the period of independence of Uzbekistan. The conceptual changes that occurred in the literary process during the years of independence, the impact of creative freedom, awareness of national identity, historical memory and spiritual values on artistic thought are covered from a scientific and theoretical point of view. The article explains the philosophical, aesthetic and literary-critical interpretations of the concept of artistic thought using the example of the literature of the period of independence. It also reveals the continuity and differences between the legacy of Jadidism, the literature of the Soviet period and the period of independence. During the research, it is scientifically proven that new paradigms of artistic thought are being formed in contemporary Uzbek literature.
DOI: 10.5061/dryad.wdbrv15kk
title: Data from: Leaf-footed bugs possess multiple hidden contrasting color signals, but only one is associated with increased body size

description: Anti-predatory displays that incorporate hidden contrasting coloration are
 found in a variety of different animals. These displays are seen in
 organisms that have drab coloration at rest, but when disturbed reveal
 conspicuous coloration. Examples include the bright abdomens of mountain
 katydids and the colorful underwings of hawk moths. Such hidden displays
 can function as secondary defenses, enabling evasion of a pursuant
 predator. To begin to understand why some species have these displays
 while others do not, we conducted phylogenetic comparative analyses to
 investigate factors associated with the evolution of hidden contrasting
 coloration in leaf-footed bugs. First, we investigated whether hidden
 contrasting coloration was associated with body size because these
 displays are considered to be more effective in larger organisms. We then
 investigated whether hidden contrasting coloration was associated with an
 alternative anti-predatory defense, in this case rapid autotomy. We found
 that leaf-footed bugs with hidden contrasting coloration tended to
 autotomize more slowly, but this result was not statistically significant.
 We also found that the presence of a body size association was dependent
 upon the form of the hidden color display. Leaf-footed bugs that reveal
 red/orange coloration were the same size, on average, as species without a
 hidden color display. However, species that reveal white patches on a
 black background were significantly larger than species without a hidden
 color display. These results highlight the diversity of forms that hidden
 contrasting color signal can take, upon which selection may act
 differently.
DOI: 10.5061/dryad.dfn2z34xv
title: Composite amine mixed matrix membranes for highpressure CO2-CH4 separation: synthesis, characterization and performance evaluation

description: The key challenge in composite mixed matrix membrane (MMMs) synthesis is
 the incompatible membrane fabrication using porous support in the dry-wet
 phase inversion technique. The key objective of this research to synthesis
 thin composite ternary (amine) mixed matrix membranes on microporous
 support by incorporating 10 wt. % of carbon molecular sieve (CMS) and 5-15
 wt. % of diethanolamine (DEA) in polyethersulfone (PES) dope solution for
 the separation of carbon dioxide (CO2) from methane (CH4). The developed
 membranes were evaluated for their morphological structure, thermal and
 mechanical stabilities, functional groups, as well as the CO2-CH4
 separation performance at high pressure (10-30 bar). The results showed
 that the developed membranes have asymmetric structure, and mechanically
 strong at 30 bar. A new class of PES/CMS/DEA composite MMMs exhibited
 improved gas permeance compared to pure PES composite polymeric membrane.
 The permselectivty of CO2/CH4 enhanced from 8.15 to 16.04 at 15 wt.% of
 DEA at 30 bar pressure. The performance of amine composite MMMs is
 theoretically predicted using a modified Maxwell model. The predictions
 were in good agreement with experimental data after applying the optimized
 values with AARE % = ~ less 2 % and R2 = 0.99.