cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.dee369
title: Occurrence Download

description: A dataset containing 30285 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Anthostoma amoenum Nitschke ex Sacc., Camposporium cambrense S.Hughes, Bombardia bombarda (Batsch) J.Schröt., Bactridium flavum Kunze, Chalara affinis Sacc. & Berl., Capronia moravica (Petr.) E.Müll., Petrini, P.J.Fisher, Samuels & Rossman, Cacumisporium capitulatum (Corda) S.Hughes, Bactrodesmiella masonii (S.Hughes) M.B.Ellis, Bactrodesmium atrum M.B.Ellis, Bisporella citrina (Batsch) Korf & S.E.Carp., Bactrodesmium spilomeum (Berk. & Broome) E.W.Mason & S.Hughes, Ceratosphaeria lampadophora (Berk. & Broome) Niessl, Chalara fungorum (Sacc.) Sacc., Chaetopsis grisea (Ehrenb.) Sacc., Ceratocystis moniliformis (Hedgc.) C.Moreau, Chalara spiralis Nag Raj & W.B.Kendr., Catinella olivacea (Batsch) Boud., Calycellina ochracea (Grelet & Croz.) Dennis, Camposporium pellucidum (Grove) S.Hughes, Asteromassaria macrospora (Desm.) Höhn., Camarops polysperma (Mont.) J.H.Mill., Arachnophora fagicola Hennebert, Asterosporium asterospermum (Pers.) S.Hughes, Durella connivens (Fr.) Rehm, Costantinella micheneri (Berk. & M.A.Curtis) S.Hughes, Dactylosporium macropus (Corda) Harz, Diaporthe rudis (Fr.) Nitschke, Ceratocystiopsis falcata (E.F.Wright & Cain) H.P.Upadhyay, Coronophora angustata Fuckel, Dictyochaeta fertilis (S.Hughes & W.B.Kendr.) Hol.-Jech., Digitodesmium elegans P.M.Kirk, Clonostachys compactiuscula (Sacc.) D.Hawksw. & W.Gams, Cylindrium elongatum Bonord., Cryptosporella compta (Tul. & C.Tul.) Sacc., Coccomyces coronatus (Schumach.) De Not., Cirrenalia lignicola P.M.Kirk, Coniochaeta velutina (Fuckel) Cooke, Ityorhoptrum verruculosum M.B.Ellis ex P.M.Kirk, Gliocladium roseum Bainier, Lachnum brevipilosum Baral, Herpotrichia macrotricha (Berk. & Broome) Sacc., Gloniopsis praelonga (Schwein.) Underw. & Earle, Hysterium angustatum Pers., Eutypa spinosa (Pers.) Tul. & C.Tul., Farlowiella carmichaeliana (Berk.) Sacc., Fragosphaeria purpurea Shear, Haplariopsis fagicola Oudem., Hypoxylon rutilum Tul. & C.Tul., Hypoxylon fuscum (Pers.) Fr., Fragosphaeria reniformis (Sacc. & Therry) Malloch & Cain)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 30285 records from 438 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009786-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8khtn6
title: Occurrence Download

description: A dataset containing 143256 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (CHN.3_1, CHN.26_1)",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 2018-2024"
 ]
}

 The dataset includes 143256 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001530-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48579/pro/wosokc
title: Marne: Cours de la Marne de Bercy à Troissy (1836)

description: Ensemble de sept feuilles qui présentent le cours de la Marne depuis l'embouchure de la Seine à Bercy jusqu'à Troissy. Les cartes ont été élaborées en 1836. La feuille 5 entre Ussy-sur-Marne et Nanteuil-sur-Marne n'existe plus. Feuille 1/7 : de Bercy à Bry-sur-Marne : EAT_Marne_Bercy_Troissy_1836_1.tif Feuille 2/7 : de Joinville-le-Pont à Cornetin : EAT_Marne_Bercy_Troissy_1836_2a.tif et EAT_Marne_Bercy_Troissy_1836_2b.tif Feuille 3/7 : de Chessy à Meaux : EAT_Marne_Bercy_Troissy_1836_3.tif Feuille 4/7 : de Meaux à Saint-Jean-les-Deux-Jumeaux : EAT_Marne_Bercy_Troissy_1836_4.tif Feuille 6/7 : de Crouttes-sur-Marne à Fossoy : EAT_Marne_Bercy_Troissy_1836_6a.tif et EAT_Marne_Bercy_Troissy_1836_6b.tif Feuille 7/7 : de Fossoy à Troissy : EAT_Marne_Bercy_Troissy_1836_7a.tif et EAT_Marne_Bercy_Troissy_1836_7b.tif Service des Cartes et Plans des Archives Nationales. Cote AN F/14/10068/1/15a. Numérisation et géoréférencement en 2015 par Juliette AUDET dans le cadre du projet Archiseine (PIREN-Seine - Archives Nationales).
DOI: 10.15468/dl.r26xgy
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scyliorhinus cabofriensis Soares, Gomes & Carvalho, 2016"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001564-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16961213
title: Cognitive Clarity through Nature: A Systematic Review and Meta-Analysis of Natural Products for Brain Fog and Cognitive Dysfunction
DOI: 10.5281/zenodo.16961214
title: Cognitive Clarity through Nature: A Systematic Review and Meta-Analysis of Natural Products for Brain Fog and Cognitive Dysfunction
DOI: 10.15468/dl.w89tyx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Campocolinus coqui",
 "Country is Chinese Taipei",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049526-250811113504898/datasets/export for details.
DOI: 10.15468/dl.n4wx8z
title: Occurrence Download

description: A dataset containing 782 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melilotus albus",
 "Country is Czechia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 782 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024796-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f7vrgv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melilotus albus",
 "Country is Kuwait",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024798-250811113504898/datasets/export for details.
DOI: 10.15468/dl.4nrp3j
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melilotus albus",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 31 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024797-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k4473j
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xenodermichthys Günther, 1878",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((7.2551 0.4095,6.9596 0.8334,6.5492 0.9061,6.0738 0.5779,5.9713 0.201,6.1078 -0.2929,6.5348 -0.5139,7.0629 -0.1853,7.2551 0.4095))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010738-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.14328743
title: Urbanisation shifts immunometabolism in a common bumblebee

description: These files include data used in the article titled: "Urbanisation shifts immunometabolism in a common bumblebee". Data files are .csv with comma-separated values, and include lichens metadata, gene expression ratio (Ct ratio to 2 reference genes), and pathogen loads measured in 7 bumblebees collected par site. Virus loads are estimated by the standardized numbers of genome copies, while Apicystis load is estimated by the standardized expression of an Apicystis housekeeping gene.
DOI: 10.5281/zenodo.10606743
title: Urbanisation shifts immunometabolism in a common bumblebee

description: These files include data used in the article titled: "Urbanisation shifts immunometabolism in a common bumblebee". Data files are .csv with comma-separated values, and include lichens metadata, gene expression ratio (Ct ratio to 2 reference genes), and pathogen loads measured in 7 bumblebees collected par site. Virus loads are estimated by the standardized numbers of genome copies, while Apicystis load is estimated by the standardized expression of an Apicystis housekeeping gene.
DOI: 10.5281/zenodo.18352097
title: ЎЗБЕКИСТОНДА ДАВЛАТ-ХУСУСИЙ ШЕРИКЧИЛИК ЛОЙИҲАЛАРИНИ АМАЛГА ОШИРИШ ИСТИҚБОЛЛАРИ

description: Тезисда Ўзбекистонда давлат-хусусий шериклик тушунчасининг мазмуни ва моҳияти, ҳозирги ҳолати, миллий иқтисодиётимизда тутган ўрни ва афзалликлари. Шунингдек ўзбекистонда давлат-хусусий шериклик асосида амалга оширилаётган лойиҳалари ёритилган. Бундан ташқари давлат-хусусий шериклик қонунининг қабул қилинишидан кўзланган мақсади ва давлат-хусусий шериклик (кейинги ўринларда – ДХШ) ривожланган мамлакатлар тажрибаси ёритилган.
DOI: 10.5281/zenodo.18352098
title: ЎЗБЕКИСТОНДА ДАВЛАТ-ХУСУСИЙ ШЕРИКЧИЛИК ЛОЙИҲАЛАРИНИ АМАЛГА ОШИРИШ ИСТИҚБОЛЛАРИ

description: Тезисда Ўзбекистонда давлат-хусусий шериклик тушунчасининг мазмуни ва моҳияти, ҳозирги ҳолати, миллий иқтисодиётимизда тутган ўрни ва афзалликлари. Шунингдек ўзбекистонда давлат-хусусий шериклик асосида амалга оширилаётган лойиҳалари ёритилган. Бундан ташқари давлат-хусусий шериклик қонунининг қабул қилинишидан кўзланган мақсади ва давлат-хусусий шериклик (кейинги ўринларда – ДХШ) ривожланган мамлакатлар тажрибаси ёритилган.
DOI: 10.15468/kum2sq
title: Taxonomic revision of the polyphyletic Phyllodactylus bordai (Squamata: Phyllodactylidae), with the description of a new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ramírez-Reyes, Tonatiuh, Durán-Arceo, Daniel R., Palacios-Aguilar, Ricardo, Flores-Villela, Oscar (2025): Taxonomic revision of the polyphyletic Phyllodactylus bordai (Squamata: Phyllodactylidae), with the description of a new species. Zootaxa 5722 (2): 151-183, DOI: 10.11646/zootaxa.5722.2.1, URL: https://doi.org/10.11646/zootaxa.5722.2.1AbstractThrough the re-evaluation of genomic data obtained from reduced genome representation sequencing method of the species belonging to Clade I within North American Phyllodactylus, we evidence the polyphyletic condition of the P. bordai taxon, which contains three independently evolving lineages. Gene flow tests demonstrated that the three lineages within P. bordai are genetically isolated and had no contact after their divergence. Furthermore, the divergence ages estimated for two of the lineages, from northern Guerrero and the Tehuacan-Cuicatlan Valley, are relatively deep, dating back to the mid-Oligocene and the mid-Eocene, respectively. Interestingly, we only obtained a gene flow signal between the most recently diverged lineage (from Huautla, Morelos) and its sister species (P. papenfussi), probably due to sporadic introgression pulses after their divergence in the early Pliocene. The evidence generated from the analysis of genomic, morphological, and climatic data allows us to propose taxonomic changes in accordance with the evolutionary history of the three main lineages, while avoiding the propagation of an artificial taxonomy within Clade I with respect to P. bordai. As such, in this study we describe Phyllodactylus ngiwa sp. nov., the earliest diverging lineage within the polyphyletic P. bordai taxon, from populations in the Tehuacan-Cuicatlan Valley. We also restrict P. bordai to populations from northern Guerrero. While the results suggest that the Morelos lineage is a distinct species from the rest of the North American Phyllodactylus species, more studies with increased sampling are necessary to assess this divergence in detail, including any interactions with its sister taxon, P. papenfussi.
DOI: 10.5281/zenodo.11159169
title: Anonymized GPS tracks

description: Spatially anonymized GPS tracks for manuscript: "Wild canids and felids differ in memory-related use of travel routes." V2 is the correct version to use in replicated or further analyses.
DOI: 10.5281/zenodo.11137088
title: Anonymized GPS tracks

description: Spatially anonymized GPS tracks for manuscript: "Wild canids and felids differ in memory-related use of travel routes." V2 is the correct version to use in replicated or further analyses.
DOI: 10.15468/dl.htcujb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((88.723985 24.096255, 88.64706099999999 24.090678, 88.572051 24.074086, 88.50081900000001 24.046892, 88.435132 24.00977, 88.376617 23.963644, 88.326718 23.909658, 88.28666 23.84915, 88.25742 23.783617, 88.239704 23.71468, 88.233931 23.64404, 88.240223 23.573436, 88.258408 23.504607, 88.28802 23.439243, 88.328317 23.378947, 88.378298 23.325196, 88.43673099999999 23.279306, 88.502179 23.242396, 88.57303899999999 23.21537, 88.647581 23.198886, 88.723985 23.193346, 88.800389 23.198886, 88.874931 23.21537, 88.945791 23.242396, 89.011239 23.279306, 89.069672 23.325196, 89.119653 23.378947, 89.15994999999999 23.439243, 89.189562 23.504607, 89.207747 23.573436, 89.214039 23.64404, 89.20826599999999 23.71468, 89.19055 23.783617, 89.16131 23.84915, 89.121252 23.909658, 89.071353 23.963644, 89.012838 24.00977, 88.94715100000001 24.046892, 88.875919 24.074086, 88.800909 24.090678, 88.723985 24.096255))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007483-260120142942310/datasets/export for details.
DOI: 10.15468/dl.n3j8p7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((88.795351 23.834013, 88.718583 23.828436, 88.64372400000001 23.811844, 88.57263500000001 23.784649, 88.507079 23.747528, 88.44868099999999 23.701402, 88.39888000000001 23.647415, 88.35890000000001 23.586907, 88.32971499999999 23.521373, 88.312031 23.452434, 88.30626599999999 23.381791, 88.31254300000001 23.311185, 88.33068900000001 23.242353, 88.36024 23.176986, 88.40045600000001 23.116686, 88.450338 23.062932, 88.508655 23.017039, 88.573975 22.980127, 88.64469800000001 22.953099, 88.719095 22.936613, 88.795351 22.931073, 88.871607 22.936613, 88.946004 22.953099, 89.016727 22.980127, 89.082047 23.017039, 89.14036400000001 23.062932, 89.190246 23.116686, 89.230462 23.176986, 89.260013 23.242353, 89.278159 23.311185, 89.284436 23.381791, 89.278671 23.452434, 89.260987 23.521373, 89.231802 23.586907, 89.191822 23.647415, 89.142021 23.701402, 89.083623 23.747528, 89.018067 23.784649, 88.946978 23.811844, 88.872119 23.828436, 88.795351 23.834013))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007481-260120142942310/datasets/export for details.
DOI: 10.57745/crye4g
title: Data Pt - 400C - XRD_spectra.txt

description: :unav
DOI: 10.57745/szxgtj
title: Data Pt - 500C - XRD_spectra.txt

description: :unav
DOI: 10.57745/4evdq7
title: Data Pt-LSCFM - 700C - XRD_spectra.txt

description: :unav
DOI: 10.57745/rlgihn
title: Data Pt - 550C - XRD_spectra.txt

description: :unav
DOI: 10.15468/dl.4zzpsh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((88.79158 24.032458, 88.71469399999999 24.026881, 88.63972099999999 24.010289, 88.568524 23.983094, 88.502869 23.945973, 88.444383 23.899847, 88.394508 23.845861, 88.35446899999999 23.785353, 88.325242 23.71982, 88.307534 23.650882, 88.30176299999999 23.580241, 88.308052 23.509637, 88.326227 23.440807, 88.355824 23.375442, 88.396101 23.315145, 88.44605799999999 23.261394, 88.504462 23.215502, 88.569879 23.178593, 88.64070599999999 23.151566, 88.71521199999999 23.135081, 88.79158 23.129542, 88.867948 23.135081, 88.942454 23.151566, 89.01328100000001 23.178593, 89.078698 23.215502, 89.137102 23.261394, 89.187059 23.315145, 89.22733599999999 23.375442, 89.256933 23.440807, 89.275108 23.509637, 89.281397 23.580241, 89.275626 23.650882, 89.257918 23.71982, 89.228691 23.785353, 89.188652 23.845861, 89.138777 23.899847, 89.080291 23.945973, 89.014636 23.983094, 88.943439 24.010289, 88.868466 24.026881, 88.79158 24.032458))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007485-260120142942310/datasets/export for details.
DOI: 10.57745/ripmy1
title: Data LSCFM - 300C - XRD_spectra.txt

description: :unav
DOI: 10.57745/x1cq1g
title: Data LSCFM - 200C - XRD_spectra.txt

description: :unav
DOI: 10.57745/49tpzo
title: Data Pt - 350C - XRD_spectra.txt

description: :unav
DOI: 10.57745/dybhvb
title: Data Pt - 700C - XRD_spectra.txt

description: :unav
DOI: 10.57745/7eewin
title: Data LSCFM - 100C - XRD_spectra.txt

description: :unav
DOI: 10.57745/fgjoup
title: Data LSCFM - 500C - XRD_spectra.txt

description: :unav
DOI: 10.57745/z57qkb
title: Data Pt - 650C - XRD_spectra.txt

description: :unav
DOI: 10.57745/dcei2d
title: Data Pt - 200C - XRD_spectra.txt

description: :unav
DOI: 10.57745/tzzk3t
title: Data Pt - 735C - XRD_spectra.txt

description: :unav
DOI: 10.57745/9jz89s
title: Data LSCFM - 600C - XRD_spectra.txt

description: :unav
DOI: 10.57745/l8d8wz
title: Data Pt - 250C - XRD_spectra.txt

description: :unav
DOI: 10.57745/o4me8p
title: Data LSCFM - 400C - XRD_spectra.txt

description: :unav
DOI: 10.57745/9l4guc
title: sample_coords.txt

description: :unav
DOI: 10.57745/og3lgr
title: x_theta.txt

description: :unav
DOI: 10.57745/im5rw6
title: Data Pt - 450C - XRD_spectra.txt

description: :unav
DOI: 10.57745/s6q5ex
title: Data Pt-LSCFM - 400C - XRD_spectra.txt

description: :unav
DOI: 10.57745/ukpzr7
title: Data LSCFM - 700C - XRD_spectra.txt

description: :unav
DOI: 10.57745/zs53bm
title: Data Pt - 300C - XRD_spectra.txt

description: :unav
DOI: 10.6084/m9.figshare.31136620
title: Epidemiology and Phylogenomic Characterization of the Clade IIb C.1 Mpox Outbreak in Phnom Penh, Cambodia (2023–2024)

description: Mpox is an infectious disease caused by the Monkeypox virus, which is divided into two main genetic clades: Clade I and Clade II. A large-scale outbreak linked to Clade IIb emerged in 2022 and rapidly spread to more than 100 countries worldwide. Here, we describe the first and only documented Mpox outbreak in Cambodia (2023-2024), the public health outbreak response efforts and analysis, and integrating epidemiological and genomic approaches. To investigate the outbreak, samples from suspect cases were confirmed using qPCR before virus whole genome sequences were obtained for phylogenomic analyses. Epidemiological investigation revealed transmission primarily through intimate contact within socially connected networks, exclusively among men who have sex with men. None of the confirmed cases reported recent international travel or zoonotic exposure. Phylogenomic analysis showed that all Cambodian Mpox genomes belonged to lineage C.1, nested within Clade IIb. Bayesian analysis of publicly available C.1 genomes indicated that the most closely related sequence was from Thailand. Monophyletic clustering of Cambodian sequences, alongside a high proportion of APOBEC3 mutations, indicates localized human-to-human transmission after introduction. Altogether, these results illustrate the risk of regional lineages like C.1 introducing Mpox into previously unaffected countries, where socially connected human networks can sustain outbreaks despite control efforts.
DOI: 10.6084/m9.figshare.31136620.v1
title: Epidemiology and Phylogenomic Characterization of the Clade IIb C.1 Mpox Outbreak in Phnom Penh, Cambodia (2023–2024)

description: Mpox is an infectious disease caused by the Monkeypox virus, which is divided into two main genetic clades: Clade I and Clade II. A large-scale outbreak linked to Clade IIb emerged in 2022 and rapidly spread to more than 100 countries worldwide. Here, we describe the first and only documented Mpox outbreak in Cambodia (2023-2024), the public health outbreak response efforts and analysis, and integrating epidemiological and genomic approaches. To investigate the outbreak, samples from suspect cases were confirmed using qPCR before virus whole genome sequences were obtained for phylogenomic analyses. Epidemiological investigation revealed transmission primarily through intimate contact within socially connected networks, exclusively among men who have sex with men. None of the confirmed cases reported recent international travel or zoonotic exposure. Phylogenomic analysis showed that all Cambodian Mpox genomes belonged to lineage C.1, nested within Clade IIb. Bayesian analysis of publicly available C.1 genomes indicated that the most closely related sequence was from Thailand. Monophyletic clustering of Cambodian sequences, alongside a high proportion of APOBEC3 mutations, indicates localized human-to-human transmission after introduction. Altogether, these results illustrate the risk of regional lineages like C.1 introducing Mpox into previously unaffected countries, where socially connected human networks can sustain outbreaks despite control efforts.
DOI: 10.57745/41ak95
title: Data Pt - 100C - XRD_spectra.txt

description: :unav
DOI: 10.57745/panbxp
title: Data Pt - 600C - XRD_spectra.txt

description: :unav
DOI: 10.57745/an7m1p
title: Data LSCFM - 20C - XRD_spectra.txt

description: :unav
DOI: 10.57745/exjztp
title: Data Pt - 50C - XRD_spectra.txt

description: :unav
DOI: 10.57745/igagwu
title: Data Pt - 20C - XRD_spectra.txt

description: :unav
DOI: 10.57745/hbmd1x
title: zero_shift_mean-1.txt

description: :unav
DOI: 10.57745/vyutbp
title: Data LSCFM - 735C - XRD_spectra.txt

description: :unav
DOI: 10.57745/8rjlfh
title: Code_LSCFM_HT_Data_Treatment.m

description: :unav
DOI: 10.57745/ugz0pc
title: Data Pt - 400C.mat

description: :unav
DOI: 10.57745/kfddjv
title: Data Pt - 20C.mat

description: :unav
DOI: 10.57745/fhp9vc
title: backcor.m

description: :unav