cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25442/hku.23677752
title: Supporting data for thesis entitled "ARIP4 resolves R loops at promoter proximal regions of highly transcribed, androgen-dependent genes to promote PolII pause release and transcriptional induction"

description: This is supporting data for my thesis entitled "ARIP4 resolves R loops at promoter proximal regions of highly transcribed, androgen-dependent genes to promote PolII pause release and transcriptional induction". <br> The promoter proximal region, which is defined as the region in proximity to the promoter where PolII transcription machinery pauses, awaiting further signals for pause release. Recently, this region has been highlighted as a hotspot where cotranscriptional R loops form and DSBs form. However, the regulation of cotranscriptionl R loops, PolII pausing and release, DSB formation, and how this impacts transcriptional output has not been linked together. In this study, we demonstrate that ARIP4, a putative RNA helicase, is a novel R loop helicase. ARIP4 is enriched at the promoter proximal regions of paused genes together with PolII, where it facilitates transcriptional induction by resolving pausing-associated R loops and promote pause release. <br> This supporting data contains raw data in addition to processed data illustrated in the thesis. The raw data consists of quantification files, uncropped Western Blots and Native PAGE gels, and timelapse photos compiled into a video format of live imaging samples. <br> <br>
DOI: 10.25442/hku.23677752.v1
title: Supporting data for thesis entitled "ARIP4 resolves R loops at promoter proximal regions of highly transcribed, androgen-dependent genes to promote PolII pause release and transcriptional induction"

description: This is supporting data for my thesis entitled "ARIP4 resolves R loops at promoter proximal regions of highly transcribed, androgen-dependent genes to promote PolII pause release and transcriptional induction". <br> The promoter proximal region, which is defined as the region in proximity to the promoter where PolII transcription machinery pauses, awaiting further signals for pause release. Recently, this region has been highlighted as a hotspot where cotranscriptional R loops form and DSBs form. However, the regulation of cotranscriptionl R loops, PolII pausing and release, DSB formation, and how this impacts transcriptional output has not been linked together. In this study, we demonstrate that ARIP4, a putative RNA helicase, is a novel R loop helicase. ARIP4 is enriched at the promoter proximal regions of paused genes together with PolII, where it facilitates transcriptional induction by resolving pausing-associated R loops and promote pause release. <br> This supporting data contains raw data in addition to processed data illustrated in the thesis. The raw data consists of quantification files, uncropped Western Blots and Native PAGE gels, and timelapse photos compiled into a video format of live imaging samples. <br> <br>
DOI: 10.6084/m9.figshare.21939659
title: Trait references by taxa list

description: List of references by taxa from where trait information was retrieved
DOI: 10.6084/m9.figshare.21939659.v1
title: Trait references by taxa list

description: List of references by taxa from where trait information was retrieved
DOI: 10.25442/hku.23642463
title: <em>Supporting data for "Unveiling the growth of polyamide films for enhanced selectivity and applying a highly selective polyamide nanofilm for energy harvesting from acid mine drainage"</em>

description: This dataset concludes the characterization of polyamide nanofilms, including SEM, TEM, AFM, QCM, XPS, WCA, and DBES. <br> The performance tests include water permeance, salt rejection (e.g., Na<sub>2</sub>SO<sub>4</sub>, MgSO<sub>4</sub>, MgCl<sub>2</sub>, NaCl), neutral molecular rejection (e.g., boron, As (III), and micropollutants), anti-fouling test, and energy output performance (open circuit voltage and power density).
DOI: 10.25442/hku.23642463.v1
title: <em>Supporting data for "Unveiling the growth of polyamide films for enhanced selectivity and applying a highly selective polyamide nanofilm for energy harvesting from acid mine drainage"</em>

description: This dataset concludes the characterization of polyamide nanofilms, including SEM, TEM, AFM, QCM, XPS, WCA, and DBES. <br> The performance tests include water permeance, salt rejection (e.g., Na<sub>2</sub>SO<sub>4</sub>, MgSO<sub>4</sub>, MgCl<sub>2</sub>, NaCl), neutral molecular rejection (e.g., boron, As (III), and micropollutants), anti-fouling test, and energy output performance (open circuit voltage and power density).
DOI: 10.6073/pasta/372869f57113cc320fa37b0d71a0ac56
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 6 meteorological station: Daily summary data: 2013 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-6 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.25442/hku.23652687
title: Supporting data for " Late Neoarchean to Paleoproterozoic tectonic evolution of the North China Craton: Evidence from the Jianping Complex in the Eastern Block"

description: The dataset contains three spreadsheets, coresponding to studies of late Neoarchean granitoids, felsic to intermediate granulites, and mafic granulites from the Jianping Complex, respectively. Data related to late Neoarchean granitoids includes ICP-MS in-suit zircon U-Pb data and in-suit Lu-Hf isotope data for six smaples, and whole-rock geochemitry results for twenty-three samples. As for the felsic to intermediate granulites, we present ICP-MS in-suit zircon U-Pb data for three selected samples and EPMA compositional data of minterals from two selected samples. Data related to mafic granulites includes ICP-MS in-suit zircon U-Pb data for two selected samples, and EPMA compositional data of minerals from two selected samples. It should be noted that the mineral compositional data were used for phase diagram modelling.
DOI: 10.25442/hku.23652687.v1
title: Supporting data for " Late Neoarchean to Paleoproterozoic tectonic evolution of the North China Craton: Evidence from the Jianping Complex in the Eastern Block"

description: The dataset contains three spreadsheets, coresponding to studies of late Neoarchean granitoids, felsic to intermediate granulites, and mafic granulites from the Jianping Complex, respectively. Data related to late Neoarchean granitoids includes ICP-MS in-suit zircon U-Pb data and in-suit Lu-Hf isotope data for six smaples, and whole-rock geochemitry results for twenty-three samples. As for the felsic to intermediate granulites, we present ICP-MS in-suit zircon U-Pb data for three selected samples and EPMA compositional data of minterals from two selected samples. Data related to mafic granulites includes ICP-MS in-suit zircon U-Pb data for two selected samples, and EPMA compositional data of minerals from two selected samples. It should be noted that the mineral compositional data were used for phase diagram modelling.
DOI: 10.26180/23632254
title: Supplementary Material. Metformin and combined oral contraceptive pills in the management of polycystic ovary syndrome: a systematic review and meta-analysis.

description: Supplementary material including GRADE tables, forest plots and search strategy for meta-analysis of metformin and combined oral contraceptive pills in polycystic ovary syndrome (PCOS).
DOI: 10.26180/23632254.v1
title: Supplementary Material. Metformin and combined oral contraceptive pills in the management of polycystic ovary syndrome: a systematic review and meta-analysis.

description: Supplementary material including GRADE tables, forest plots and search strategy for meta-analysis of metformin and combined oral contraceptive pills in polycystic ovary syndrome (PCOS).
DOI: 10.6073/pasta/eaf879a6e15b62a78bc89b0136c7bdfc
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 7 meteorological station: 30-minute summary data: 2017 - ongoing

description: This data package contains 30-minute air temperature, relative humidity, and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-1 met station. Average air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively. This is an ONGOING dataset.
DOI: 10.6084/m9.figshare.23713899
title: Extended data figures

description: Extended data Fig 1b: Excitation and emission spectra of TAC-Rh with increasing K<sup>+</sup> concentration at pH = 7.0. Extended data Fig 1c: Normalized O/R ratio of TAC-Rh/Alexa Fluor 647 with increasing [K<sup>+</sup>] at pH 7.0 and 6.0. Extended data Fig 1d: Fluorescence emission spectra of <em>pHlicKerRE</em> corresponding to TAC-Rh and Alexa Fluor 647 with increasing [K+] at pH = 7.0. Extended data Fig 1e: Normalized O/R ratio of TAC-Rh/Alexa Fluor 647 with increasing [K<sup>+</sup>] at pH 7.0. <br> Extended data Fig 2b-d: 2-IM profiles of beads clamped at indicated pH and [K<sup>+</sup>]. <br> Extended data Fig 4b: Normalized whole cell intensities for the uptake of Alexa 647 labelled 3W<sup>EE</sup> in untransfected and hMSR1 transfected HEK 293T cells. Extended data Fig 4c: Normalized intensities for HEK 293T cells pulsed with 3W<sup>RE</sup> in the presence (+Tf) and absence (-Tf) of Tf. <br> Extended data Fig 5a: Representative families of currents measured from cells stably expressing WT-Kv<sub>11.1</sub> or G601S- Kv<sub>11.1</sub> channel proteins (traces recorded using the standard extracellular saline). Extended data Fig 5b: Representative families of currents measured from cells stably expressing WT-Kv<sub>11.1</sub> or G601S- Kv<sub>11.1</sub> channel proteins (traces recorded using modified extracellular saline). Extended data Fig 5c: Midpoint potential for IKv<sub>11.1</sub> activation (V<sub>1/2</sub>) measured from the i-v curve of Fig 6i and 6j. Extended data Fig 5d: Slope factor for IKv<sub>11.1</sub> current activation (<em>k</em>) measured from the i-v curve of Fig 6i and 6j. <br>
DOI: 10.26180/23713503
title: A pilot randomised controlled trial of a vestibular-stimulation, isometric exercise machine to manage symptoms of Parkinsonism

description: This study will test the efficacy of a novel therapeutic exercise machine at improving symptoms of Parkinson's disease and their neurological underpinnings in patients with Parkinson's Disease and Atypical Parkinsonism.<br> The Reviver exercise machine simultaneously stimulates the vestibular system whilst inducing isometric exercise.<br> We hypothesise that a 12 week intervention on the Reviver will improve balance, mobility, and other motor symptoms of Parkinson's Disease.
description: HeSANDA 1.0.0
DOI: 10.6073/pasta/3251c38c3618ba570b1409961d06f081
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 7 meteorological station: 5-minute summary wind and air temperature data: 2013 - ongoing

description: This data package contains 5-minute air temperature and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-7 met station. Average air temperature, wind speed, and wind direction are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This is a subset of baseline weather data collected at the 15 Jornada Basin LTER CSIS study blocks, New Mexico. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.5281/zenodo.8163929
title: Prediction of potential suitable areas for Phoebe zhennan in future different climate scenarios

description: This dataset includes sample collection data of existing <em>Phoebe zhennan</em> in China, as well as historical climate data and future climate data (with a resolution of 2.5 minutes and using the BCC-CSM2-MR GCM model) collected by Worldclim, along with geographical elevation data. These data are used to predict the potential distribution range of <em>Phoebe zhennan</em> in the future.
DOI: 10.5281/zenodo.8163928
title: Prediction of potential suitable areas for Phoebe zhennan in future different climate scenarios

description: This dataset includes sample collection data of existing <em>Phoebe zhennan</em> in China, as well as historical climate data and future climate data (with a resolution of 2.5 minutes and using the BCC-CSM2-MR GCM model) collected by Worldclim, along with geographical elevation data. These data are used to predict the potential distribution range of <em>Phoebe zhennan</em> in the future.
DOI: 10.21947/1899846
title: Site G - PNNL Surface Flux Station / Daily Fluxes

description: Preliminary processed turbulent fluxes; compilation of 30-minute estimates for one day
DOI: 10.21947/1899847
title: Site G - PNNL Surface Flux Station / Processed Fluxes

description: Preliminary processed turbulent fluxes and relevant statistics; 30-minute estimate
DOI: 10.21947/1899848
title: Site A5 - PNNL Surface Flux Station / Daily Fluxes

description: Preliminary processed turbulent fluxes; compilation of 30-minute estimates for one day
DOI: 10.21947/1899849
title: Site A5 - PNNL Surface Flux Station / Processed Fluxes

description: Preliminary processed turbulent fluxes and relevant statistics; 30-minute estimates
DOI: 10.21947/1899851
title: Site A2 - PNNL Surface Flux Station / Processed Fluxes

description: Preliminary processed turbulent fluxes and relevant statistics; 30-minute estimates
DOI: 10.5439/1990002
title: lblch2flux (c0)

description: lblch2flux
DOI: 10.5439/1990003
title: lblch1flux (c0)

description: lblch1flux
DOI: 10.5439/1990004
title: mergesonde2mace (c1)

description: mergesonde2mace
DOI: 10.5439/1990005
title: irt25m (a1)

description: The infrared thermometer (IRT) is a ground-based radiation pyrometer that measures the equivalent blackbody brightness temperature of the scene in its field of view. The downwelling version has a narrow field of view for measuring sky temperature and detecting clouds. The upwelling version has a wide field of view for measuring the narrowband radiating temperature of the ground surface.
DOI: 10.5439/1990006
title: irt25m (a2)

description: The infrared thermometer (IRT) is a ground-based radiation pyrometer that measures the equivalent blackbody brightness temperature of the scene in its field of view. The downwelling version has a narrow field of view for measuring sky temperature and detecting clouds. The upwelling version has a wide field of view for measuring the narrowband radiating temperature of the ground surface.
DOI: 10.5439/1990008
title: twrcam40m (a1)

description: twrcam40m
DOI: 10.5439/1990009
title: lblch1trailer (c1)

description: lblch1trailer
DOI: 10.5439/1990010
title: lblch2atm (c1)

description: lblch2atm
DOI: 10.5439/1990011
title: lblch1aeri (c1)

description: lblch1aeri
DOI: 10.6073/pasta/c57995e66af204c4bcd740252a6a33e0
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 7 meteorological station: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at 10 cm at CSIS Block-7. Collection of soil volumetric water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured at 10 cm depth at 3 locations at each of the 4 plots per block. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded every 30 minutes at an automated meteorological station installed at Jornada LTER CSIS Block-7 site. This is an ONGOING dataset.
DOI: 10.6073/pasta/8ef8d92977a00665af194d09eaedc789
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 7 meteorological station: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily Average of 30-minute Soil Volumetric Water Content data at 10 cm at CSIS Block-7. Collection of soil water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured every 30 minutes at 10 cm depth at 3 locations at each of the 4 plots per block and averaged for the daily value. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded at an automated meteorological station installed at Jornada LTER CSIS Block-7 site. This is an ONGOING dataset.
DOI: 10.6073/pasta/3f7018cdd7585dacf303692373d29c76
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 8 meteorological station: 30-minute summary data: 2017 - ongoing

description: This data package contains 30-minute air temperature, relative humidity, and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-1 met station. Average air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively. This is an ONGOING dataset.
DOI: 10.5281/zenodo.8166281
title: Bathymetric,Magnetic data and code for Coupled detachment faulting and hydrothermal circulation at 49.7°E Southwest Indian Ridge revealed by seafloor magnetism

description: The dataset contains the Dragon Horn area bathymetric data, near-bottom magnetic survey data, and the SimPEG (V0.15.2) source code used in the forward and inversion of magnetic anomalies.
DOI: 10.6084/m9.figshare.23713947
title: Supplementary Figures

description: Supplementary Fig. S1: Normalized excitation and emission spectra of Alexa488N, TAC-Rh and Alexa647N. Supplementary Fig. S2: UV-Vis absorption spectrum of ssDNA-TAC-Rh. Supplementary Fig. S8: 2-IM profiles of HEK 293T cells clamped at pH 6.0. Supplementary Fig. S9: Comparison of <em>in vitro</em> and <em>in cellulo</em> clamping. A-B,<em> In vitro </em>and <em>in cellulo </em>response of <em>pHlicKer </em>given by fold change (FC) of (A) D/A from pH 6.0 - 6.6 at 0.1 mM [K<sup>+</sup>] and (B) O/R ratios from 0.1 - 140 mM [K<sup>+</sup>] at the indicated pH.<em> C</em>, <em>In vitro </em>and <em>in cellulo K</em>d values of <em>pHlicKer </em>determined at the indicated pH. D, O/R values of <em>pHlicKer</em> at pH 6.6 as a function of [K<sup>+</sup>] obtained <em>in vitro </em>and <em>in cellulo</em>. Supplementary Fig. S10: A) Normalized ratio of fluorescence intensity of donor to that of acceptor (D/A) of <em>pHlicKer</em><sup><em>Biotin</em></sup> on beads as a function of pH. B) <em>pHlicKer</em><sup><em>Biotin</em></sup><em> K</em>d as a function of pH. Supplementary Fig. S11B: Pearson’s correlation coefficient (PCC) of colocalization (CL) and pixel shift (PS) of HEK 293T cells expressing Kv11.1 immunostained for anti-Kv<sub>11.1</sub> and anti-58K that marks the trans Golgi network. . Supplementary Fig. S12B: Pearson’s correlation coefficient (PCC) of colocalization (CL) and pixel shift (PS) of HEK 293T cells expressing Kv<sub>11.1</sub> immunostained for anti-Kv<sub>11.1</sub> and anti-Transferrin receptor that marks recycling endosomes. Supplementary Fig. S13: A-B, [K<sup>+</sup>]<sub>RE</sub> and C-D, [K<sup>+</sup>]<sub>TGN</sub> values in UT cells in the absence and presence of cisapride. Supplementary Fig. S14: [K<sup>+</sup>]<sub>TGN</sub> values in UT and WT cells. Supplementary Table 1: Propagation of error assessed by a blind test.
DOI: 10.6084/m9.figshare.23713947.v1
title: Supplementary Figures

description: Supplementary Fig. S1: Normalized excitation and emission spectra of Alexa488N, TAC-Rh and Alexa647N. Supplementary Fig. S2: UV-Vis absorption spectrum of ssDNA-TAC-Rh. Supplementary Fig. S8: 2-IM profiles of HEK 293T cells clamped at pH 6.0. Supplementary Fig. S9: Comparison of <em>in vitro</em> and <em>in cellulo</em> clamping. A-B,<em> In vitro </em>and <em>in cellulo </em>response of <em>pHlicKer </em>given by fold change (FC) of (A) D/A from pH 6.0 - 6.6 at 0.1 mM [K<sup>+</sup>] and (B) O/R ratios from 0.1 - 140 mM [K<sup>+</sup>] at the indicated pH.<em> C</em>, <em>In vitro </em>and <em>in cellulo K</em>d values of <em>pHlicKer </em>determined at the indicated pH. D, O/R values of <em>pHlicKer</em> at pH 6.6 as a function of [K<sup>+</sup>] obtained <em>in vitro </em>and <em>in cellulo</em>. Supplementary Fig. S10: A) Normalized ratio of fluorescence intensity of donor to that of acceptor (D/A) of <em>pHlicKer</em><sup><em>Biotin</em></sup> on beads as a function of pH. B) <em>pHlicKer</em><sup><em>Biotin</em></sup><em> K</em>d as a function of pH. Supplementary Fig. S11B: Pearson’s correlation coefficient (PCC) of colocalization (CL) and pixel shift (PS) of HEK 293T cells expressing Kv11.1 immunostained for anti-Kv<sub>11.1</sub> and anti-58K that marks the trans Golgi network. . Supplementary Fig. S12B: Pearson’s correlation coefficient (PCC) of colocalization (CL) and pixel shift (PS) of HEK 293T cells expressing Kv<sub>11.1</sub> immunostained for anti-Kv<sub>11.1</sub> and anti-Transferrin receptor that marks recycling endosomes. Supplementary Fig. S13: A-B, [K<sup>+</sup>]<sub>RE</sub> and C-D, [K<sup>+</sup>]<sub>TGN</sub> values in UT cells in the absence and presence of cisapride. Supplementary Fig. S14: [K<sup>+</sup>]<sub>TGN</sub> values in UT and WT cells. Supplementary Table 1: Propagation of error assessed by a blind test.