cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2nglc3
title: CCDC 2456885: Experimental Crystal Structure Determination

description: Related Article: Dongjing Hong|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ngld4
title: CCDC 2456886: Experimental Crystal Structure Determination

description: Related Article: Dongjing Hong|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2nglf5
title: CCDC 2456887: Experimental Crystal Structure Determination

description: Related Article: Dongjing Hong|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.30290302
title: Amplicon Sequencing Data for Bacteria (16S) and Fungi (ITS) (Raw)

description: Raw sequencing dataset from an experimentally simulated a short-term precipitation pulse (50 mm) in soils from the hyperarid Atacama Desert to evaluate shifts in microbial community composition, diversity, and functional potential, using a microcosm experiment. DNA extraction was performed using the DNeasy® PowerSoil® Pro Kit (Qiagen), following the manufacturer’s protocol, and DNA concentration was determined using a Qubit™ 4.0 fluorimeter (ThermoFisher Scientific). The 16S ribosomal RNA gene, tar-geting the V3-V4 region, and the ITS ribosomal RNA were sequenced at Zymo Research. Primers for sequencing were provided by the same company, and sequencing was performed using the Illumina® MiSeq™ platform. Zymo Research conducted the taxonomic assignment of fungi and bacteria using UCLUST in QIIME v.1.9.1, referencing their proprietary database. The absolute abundance of Amplicon Sequence Variants (ASVs) was determined by Zymo Research using qPCR, with a standard curve for both the 16S and ITS genes.
DOI: 10.6084/m9.figshare.30290302.v1
title: Amplicon Sequencing Data for Bacteria (16S) and Fungi (ITS) (Raw)

description: Raw sequencing dataset from an experimentally simulated a short-term precipitation pulse (50 mm) in soils from the hyperarid Atacama Desert to evaluate shifts in microbial community composition, diversity, and functional potential, using a microcosm experiment. DNA extraction was performed using the DNeasy® PowerSoil® Pro Kit (Qiagen), following the manufacturer’s protocol, and DNA concentration was determined using a Qubit™ 4.0 fluorimeter (ThermoFisher Scientific). The 16S ribosomal RNA gene, tar-geting the V3-V4 region, and the ITS ribosomal RNA were sequenced at Zymo Research. Primers for sequencing were provided by the same company, and sequencing was performed using the Illumina® MiSeq™ platform. Zymo Research conducted the taxonomic assignment of fungi and bacteria using UCLUST in QIIME v.1.9.1, referencing their proprietary database. The absolute abundance of Amplicon Sequence Variants (ASVs) was determined by Zymo Research using qPCR, with a standard curve for both the 16S and ITS genes.
DOI: 10.15468/dl.a8hbd5
title: Occurrence Download

description: A dataset containing 128418307 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is iNaturalist Research-grade Observations"
 ]
}

 The dataset includes 128418307 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054813-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dscnmz
title: Occurrence Download

description: A dataset containing 83797 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Junonia coenia"
 ]
}

 The dataset includes 83797 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054799-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.32dbvk
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Elaeocarpus balansae)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 43 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054863-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26023/f99k-s8k6-9z10
title: CASES-97: Wyoming King Air Raw Flight Level Data. Version 1.0

description: This dataset contains the raw King-Air data from all flights that occurred during the Cooperative Atmosphere Surface Exchange Study 1997 (CASES-97). The data are contained in a tar file.
DOI: 10.15468/dl.x7aqsq
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is Megaptera novaeangliae",
 "Year 2006-2006"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054865-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25801637
title: Relationship between remnant cholesterol and risk of kidney stones in U.S. Adults: a 2007–2016 NHANES analysis

description: Remnant cholesterol (RC) is the cholesterol content of triglyceride-rich lipoproteins. This study aimed to investigate the association between RC levels and kidney stones in U.S. adults. Data were obtained from the 2007 to 2016 National Health and Nutrition Examination Survey (NHANES). A total of 10,551 participants with complete data were included and analyzed in this study. Univariate and multivariate logistic regression analysis, restricted cubic spline function, subgroup analysis and mediation analysis were preformed to estimate the independent relationship between RC levels and kidney stones. Participants with stone formation had higher levels of RC than those with without stone formation (25.78 ± 13.83 vs 23.27 ± 13.04, <i>p</i>&lt;<b> </b>0.001). The results of logistic regression analysis and dose-response risk curves revealed a positive nonlinear association between RC levels and risk of kidney stones [univariate: adjusted odds ratio (aOR) =2.388, 95% CI: 1.797–3.173, <i>p</i>&lt;<b> </b>0.001; multivariate: aOR = 1.424, 95% CI: 1.050–1.929, <i>p</i> =<b> </b>0.023]. Compared with the discordantly low RC group, the discordantly high RC group was associated with increased risk of kidney stones (aOR = 1.185, 95% CI: 1.013–1.386, <i>p</i>=<b> </b>0.034). Similar results were demonstrated according to the discordance of different clinical cut points. And metabolic syndrome parameters and vitamin D levels parallelly mediated the association between RC and kidney stone risk. Higher RC levels were independently associated with an increased risk of kidney stone incidence. Higher remnant cholesterol levels were independently associated with an increased risk of kidney stone incidence.
DOI: 10.6084/m9.figshare.25801637.v1
title: Relationship between remnant cholesterol and risk of kidney stones in U.S. Adults: a 2007–2016 NHANES analysis

description: Remnant cholesterol (RC) is the cholesterol content of triglyceride-rich lipoproteins. This study aimed to investigate the association between RC levels and kidney stones in U.S. adults. Data were obtained from the 2007 to 2016 National Health and Nutrition Examination Survey (NHANES). A total of 10,551 participants with complete data were included and analyzed in this study. Univariate and multivariate logistic regression analysis, restricted cubic spline function, subgroup analysis and mediation analysis were preformed to estimate the independent relationship between RC levels and kidney stones. Participants with stone formation had higher levels of RC than those with without stone formation (25.78 ± 13.83 vs 23.27 ± 13.04, <i>p</i>&lt;<b> </b>0.001). The results of logistic regression analysis and dose-response risk curves revealed a positive nonlinear association between RC levels and risk of kidney stones [univariate: adjusted odds ratio (aOR) =2.388, 95% CI: 1.797–3.173, <i>p</i>&lt;<b> </b>0.001; multivariate: aOR = 1.424, 95% CI: 1.050–1.929, <i>p</i> =<b> </b>0.023]. Compared with the discordantly low RC group, the discordantly high RC group was associated with increased risk of kidney stones (aOR = 1.185, 95% CI: 1.013–1.386, <i>p</i>=<b> </b>0.034). Similar results were demonstrated according to the discordance of different clinical cut points. And metabolic syndrome parameters and vitamin D levels parallelly mediated the association between RC and kidney stone risk. Higher RC levels were independently associated with an increased risk of kidney stone incidence. Higher remnant cholesterol levels were independently associated with an increased risk of kidney stone incidence.
DOI: 10.6084/m9.figshare.29197285
title: History and advances in the taxonomy of the Bangiaceae (Rhodophyta) and new evidence to support splitting the genus <i>Pyropia</i>

description: The Bangiaceae is an ancient and monophyletic red algal lineage whose origin has been dated back to c. 1047 Mya. More than 200 species have been detected in this family. They are distributed globally from the tropics to the poles, typically occurring in the intertidal, although a few species are found in the subtidal. Several species are economically important and cultivated mainly in East Asian countries, providing food and livelihoods for seaweed farmers and their families in coastal communities. However, with simple and plastic morphology, identification of the Bangiaceae is notoriously difficult using morphological characters alone, which has resulted in a complex taxonomic history. Furthermore, whether the generic ranks should be split or combined has always been a matter of debate and remains controversial amongst taxonomists today. Utilizing molecular approaches to assist in species delimitations poses both opportunities and challenges, with the potential for major changes in the taxonomy of the Bangiaceae. In the first two decades after molecular approaches were routinely introduced for taxonomy in the early 1990s, phycologists split the Bangiaceae from two to 15 genera. However, over the last decade, whether the family should be split further has been controversial. In this paper, we have reviewed the taxonomic history of the Bangiaceae, including paying particular attention to non-English language literature to improve accessibility to readers. We have also summarized the latest phylogenetic advances and have proposed how to proceed further to resolve the taxonomy. The latest evidence from phylogenomics revealed four well-resolved clades in <i>Pyropia</i> sensu lato, which provide strong evidence to split <i>Pyropia</i>. A robust taxonomy and phylogeny of such an ancient lineage that reflects its evolutionary history would be invaluable to underpin research on biogeographic patterns, adaptive evolution and palaeobiogeography events. Resource protection and cultivar breeding would also benefit from it. The taxonomic history and advancement of Bangiaceae was reviewed and clarified.Phylogenomics will provide new insights into the family’s phylogeny.The phylogenomic approach provides robust evidence to split <i>Pyropia</i>. The taxonomic history and advancement of Bangiaceae was reviewed and clarified. Phylogenomics will provide new insights into the family’s phylogeny. The phylogenomic approach provides robust evidence to split <i>Pyropia</i>.
DOI: 10.6084/m9.figshare.29197285.v1
title: History and advances in the taxonomy of the Bangiaceae (Rhodophyta) and new evidence to support splitting the genus <i>Pyropia</i>

description: The Bangiaceae is an ancient and monophyletic red algal lineage whose origin has been dated back to c. 1047 Mya. More than 200 species have been detected in this family. They are distributed globally from the tropics to the poles, typically occurring in the intertidal, although a few species are found in the subtidal. Several species are economically important and cultivated mainly in East Asian countries, providing food and livelihoods for seaweed farmers and their families in coastal communities. However, with simple and plastic morphology, identification of the Bangiaceae is notoriously difficult using morphological characters alone, which has resulted in a complex taxonomic history. Furthermore, whether the generic ranks should be split or combined has always been a matter of debate and remains controversial amongst taxonomists today. Utilizing molecular approaches to assist in species delimitations poses both opportunities and challenges, with the potential for major changes in the taxonomy of the Bangiaceae. In the first two decades after molecular approaches were routinely introduced for taxonomy in the early 1990s, phycologists split the Bangiaceae from two to 15 genera. However, over the last decade, whether the family should be split further has been controversial. In this paper, we have reviewed the taxonomic history of the Bangiaceae, including paying particular attention to non-English language literature to improve accessibility to readers. We have also summarized the latest phylogenetic advances and have proposed how to proceed further to resolve the taxonomy. The latest evidence from phylogenomics revealed four well-resolved clades in <i>Pyropia</i> sensu lato, which provide strong evidence to split <i>Pyropia</i>. A robust taxonomy and phylogeny of such an ancient lineage that reflects its evolutionary history would be invaluable to underpin research on biogeographic patterns, adaptive evolution and palaeobiogeography events. Resource protection and cultivar breeding would also benefit from it. The taxonomic history and advancement of Bangiaceae was reviewed and clarified.Phylogenomics will provide new insights into the family’s phylogeny.The phylogenomic approach provides robust evidence to split <i>Pyropia</i>. The taxonomic history and advancement of Bangiaceae was reviewed and clarified. Phylogenomics will provide new insights into the family’s phylogeny. The phylogenomic approach provides robust evidence to split <i>Pyropia</i>.
DOI: 10.6084/m9.figshare.27612798
title: Taxonomic updates in the family Leptolyngbyaceae (Leptolyngbyales, Cyanobacteria): the description of <i>Pseudoleptolyngbya</i> gen. nov, <i>Leptolyngbyopsis</i> gen. nov., and the replacement of <i>Arthronema</i>

description: In this paper, we used the polyphasic approach combining 16S rRNA gene phylogenies, identity (p-distance), 16S-23S ITS secondary structures, and morphological and habitat analyses to describe two new genera of Leptolyngbyaceae, <i>Pseudoleptolynbgya</i> G.S. Hentschke gen. nov. (based on LEGE 16533 and LEGE 16651) and <i>Leptolyngbyopsis</i> G.S. Hentschke gen. nov. (based on LEGE 16524). These strains were sampled from freshwater environments at Figueira da Foz, Monchique and Coimbra, Portugal. Both genera are morphologically and ecologically identical to <i>Leptolyngbya</i> and can only be distinguished from it by molecular analyses. Based on morphological and ITS secondary structure analyses we describe two species of <i>Pseudoleptolyngbya, P. figueirensis</i> and <i>P. monchiquensis. P. figueirensis</i> differs from <i>P. monchiquensis</i> by the denser arrangement of the trichomes, the presence of firm sheaths, the common formation of shorter trichomes (up to 30 cells), and the olive or yellowish-green cell content, which is darker in <i>P. monchiquensis</i>. Moreover, the macroscopic appearance of <i>P. figueirensis</i> is a dense brownish mat, while <i>P. monchiquensis</i> is less dense and reddish. 16S rRNA gene sequences of <i>Arthronema africanum</i> CCALA020 are &gt; 99% identical to <i>Leptolyngbya boryana</i> PCC6306, so we transfer <i>A. africanum</i> to <i>Leptolyngbya</i>, as <i>L. africanoidea</i>. <i>Pseudoleptolyngbya</i> gen. nov. and <i>Leptolyngbyopsis</i> gen. nov. are described.<i>Arthronema</i> is placed in synonymy with <i>Leptolyngbya.</i> <i>Pseudoleptolyngbya</i> gen. nov. and <i>Leptolyngbyopsis</i> gen. nov. are described. <i>Arthronema</i> is placed in synonymy with <i>Leptolyngbya.</i>
DOI: 10.6084/m9.figshare.27612798.v1
title: Taxonomic updates in the family Leptolyngbyaceae (Leptolyngbyales, Cyanobacteria): the description of <i>Pseudoleptolyngbya</i> gen. nov, <i>Leptolyngbyopsis</i> gen. nov., and the replacement of <i>Arthronema</i>

description: In this paper, we used the polyphasic approach combining 16S rRNA gene phylogenies, identity (p-distance), 16S-23S ITS secondary structures, and morphological and habitat analyses to describe two new genera of Leptolyngbyaceae, <i>Pseudoleptolynbgya</i> G.S. Hentschke gen. nov. (based on LEGE 16533 and LEGE 16651) and <i>Leptolyngbyopsis</i> G.S. Hentschke gen. nov. (based on LEGE 16524). These strains were sampled from freshwater environments at Figueira da Foz, Monchique and Coimbra, Portugal. Both genera are morphologically and ecologically identical to <i>Leptolyngbya</i> and can only be distinguished from it by molecular analyses. Based on morphological and ITS secondary structure analyses we describe two species of <i>Pseudoleptolyngbya, P. figueirensis</i> and <i>P. monchiquensis. P. figueirensis</i> differs from <i>P. monchiquensis</i> by the denser arrangement of the trichomes, the presence of firm sheaths, the common formation of shorter trichomes (up to 30 cells), and the olive or yellowish-green cell content, which is darker in <i>P. monchiquensis</i>. Moreover, the macroscopic appearance of <i>P. figueirensis</i> is a dense brownish mat, while <i>P. monchiquensis</i> is less dense and reddish. 16S rRNA gene sequences of <i>Arthronema africanum</i> CCALA020 are &gt; 99% identical to <i>Leptolyngbya boryana</i> PCC6306, so we transfer <i>A. africanum</i> to <i>Leptolyngbya</i>, as <i>L. africanoidea</i>. <i>Pseudoleptolyngbya</i> gen. nov. and <i>Leptolyngbyopsis</i> gen. nov. are described.<i>Arthronema</i> is placed in synonymy with <i>Leptolyngbya.</i> <i>Pseudoleptolyngbya</i> gen. nov. and <i>Leptolyngbyopsis</i> gen. nov. are described. <i>Arthronema</i> is placed in synonymy with <i>Leptolyngbya.</i>
DOI: 10.6084/m9.figshare.29213130
title: Macroalgal mat species diversity, composition, and seasonality at four coastal sites across the English Channel/La Manche region

description: Seaweed mats are a consequence of eutrophication in coastal waters and can have negative ecological impacts. Consequently, many European environmental assessment frameworks (e.g. the Water Framework Directive, Marine Strategy Framework Directive) monitor seaweed mat biomass. <i>Ulva</i>, commonly referred to as sea lettuce, is often assumed to be the dominant taxon, but mats can contain multiple <i>Ulva</i> species, and other taxa, and within-mat diversity is often poorly known. Understanding the composition of seaweed mats has implications for nutrient removal from coastal waters because seaweeds uptake and store nutrients differently between species, time of year and location. The use of traditional molecular methods to identify seaweed species cannot easily be applied to mats. In contrast, with the development of Next Generation Sequencing and Cleaved Amplified Polymorphic Sequences assay, a bulk sampling approach for monitoring the seaweed species within mats can be applied. Here, we applied this bulk sampling approach to monitor seaweed species at four sites: three estuarine sites containing mudflats and one exposed sandy site across the English Channel/La Manche region that historically and currently have occurrences of seaweed mats. We assessed variability between sites with respect to biomass, entrainment, species composition and seasonality. The highest mat abundance was found at Holes Bay, Poole, UK and entrainment or burial of seaweed within the sediment was found at two sites, Holes Bay and the Ledano Estuary, France, correlating with similar sediment types and high seaweed biomass. Foliose <i>Ulva lacinulata</i> dominated at Holes Bay, while Langstone Harbour, Portsmouth, UK had many tubular and filamentous green species and one brown filamentous species. At the two French sites we identified foliose <i>Ulva</i> species. This study demonstrates the high seaweed species diversity and biomass that can be found within macroalgal mats, information that will be important in the refinement and development of model-based nutrient removal estimates as part of nutrient mitigation and management strategies. • We demonstrate a novel approach to the assessment of seaweed mat diversity. • High mat-forming potential and dominance of <i>Ulva lacinulata</i> was measured at Holes Bay and <i>Ulva</i> species diversity characterized at all locations. • Mat biomass and entrainment varied significantly with environmental conditions and between locations within close proximity to each other. • We highlight the importance of consistent monitoring of seaweed species, biomass, per cent cover and entrainment to enhance coastal marine management efforts.