cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7850468.v1
title: Additional file 4: of Study of serious adverse drug reactions using FDA-approved drug labeling and MedDRA

description: Table S4. MedDRA term extraction performance of Oracle Text Search (XLS 56 kb)
DOI: 10.6084/m9.figshare.7850456
title: Additional file 1: of Study of serious adverse drug reactions using FDA-approved drug labeling and MedDRA

description: Table S1. The entire MedDRA PT corpus for Boxed Warning sections among selected 367 drugs; (XLS 62 kb)
DOI: 10.6084/m9.figshare.7850456.v1
title: Additional file 1: of Study of serious adverse drug reactions using FDA-approved drug labeling and MedDRA

description: Table S1. The entire MedDRA PT corpus for Boxed Warning sections among selected 367 drugs; (XLS 62 kb)
DOI: 10.6084/m9.figshare.7850462.v1
title: Additional file 2: of Study of serious adverse drug reactions using FDA-approved drug labeling and MedDRA

description: Table S2. Drugs and PT distributions among MedDRA SOCs (XLS 33 kb)
DOI: 10.6084/m9.figshare.7850411
title: Additional file 7: of Evaluation of linear models and missing value imputation for the analysis of peptide-centric proteomics

description: Archive containing the R (version 3.4.4) implementation of the computational pipeline. (RAR 15 kb)
DOI: 10.6084/m9.figshare.7850411.v1
title: Additional file 7: of Evaluation of linear models and missing value imputation for the analysis of peptide-centric proteomics

description: Archive containing the R (version 3.4.4) implementation of the computational pipeline. (RAR 15 kb)
DOI: 10.6084/m9.figshare.7850330
title: Additional file 9: of Performance evaluation of commercial library construction kits for PCR-based targeted sequencing using a unique molecular identifier

description: Detection of variants with each detection method depending on various input DNA amounts. Success and failure of variant detection are indicated by ‘O’ and ‘X,’ respectively. AF, allele frequency; UMI, unique molecular identifier. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7850318
title: Additional file 8: of Performance evaluation of commercial library construction kits for PCR-based targeted sequencing using a unique molecular identifier

description: Variants in Horizon cfDNA reference material. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7850330.v1
title: Additional file 9: of Performance evaluation of commercial library construction kits for PCR-based targeted sequencing using a unique molecular identifier

description: Detection of variants with each detection method depending on various input DNA amounts. Success and failure of variant detection are indicated by ‘O’ and ‘X,’ respectively. AF, allele frequency; UMI, unique molecular identifier. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7850318.v1
title: Additional file 8: of Performance evaluation of commercial library construction kits for PCR-based targeted sequencing using a unique molecular identifier

description: Variants in Horizon cfDNA reference material. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7850297
title: Additional file 8: of Prognostic models for breast cancer: a systematic review

description: Characteristics of the models validated in external populations. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7850303
title: Additional file 9: of Prognostic models for breast cancer: a systematic review

description: Overview of external validation studies. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.7850303.v1
title: Additional file 9: of Prognostic models for breast cancer: a systematic review

description: Overview of external validation studies. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.7850297.v1
title: Additional file 8: of Prognostic models for breast cancer: a systematic review

description: Characteristics of the models validated in external populations. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7850291
title: Additional file 7: of Prognostic models for breast cancer: a systematic review

description: Number of external validation studies. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7850279
title: Additional file 5: of Prognostic models for breast cancer: a systematic review

description: Articles that presented only the internal validation. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7850282
title: Additional file 3: of Performance evaluation of commercial library construction kits for PCR-based targeted sequencing using a unique molecular identifier

description: Summary of the methods to detect variants from the manufacturer. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7850285
title: Additional file 6: of Prognostic models for breast cancer: a systematic review

description: Articles that presented model external validation. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.7850291.v1
title: Additional file 7: of Prognostic models for breast cancer: a systematic review

description: Number of external validation studies. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7850273
title: Additional file 4: of Prognostic models for breast cancer: a systematic review

description: Articles that presented model development and/or internal validation. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.7850282.v1
title: Additional file 3: of Performance evaluation of commercial library construction kits for PCR-based targeted sequencing using a unique molecular identifier

description: Summary of the methods to detect variants from the manufacturer. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7850285.v1
title: Additional file 6: of Prognostic models for breast cancer: a systematic review

description: Articles that presented model external validation. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.7850279.v1
title: Additional file 5: of Prognostic models for breast cancer: a systematic review

description: Articles that presented only the internal validation. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7850264
title: Additional file 3: of Prognostic models for breast cancer: a systematic review

description: Model validation studies that were excluded because of no full text. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7850267
title: Additional file 8: of Multispecies genome-wide analysis defines the MAP3K gene family in Gossypium hirsutum and reveals conserved family expansions

description: OrthoMCL generated clusters for all proteins in 7 plant species. (TXT 11283 kb)
DOI: 10.6084/m9.figshare.7850261
title: Additional file 1: of Performance evaluation of commercial library construction kits for PCR-based targeted sequencing using a unique molecular identifier

description: Characteristics of the five kits and QC metrics of the sequencing data. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7850264.v1
title: Additional file 3: of Prognostic models for breast cancer: a systematic review

description: Model validation studies that were excluded because of no full text. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7850273.v1
title: Additional file 4: of Prognostic models for breast cancer: a systematic review

description: Articles that presented model development and/or internal validation. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.7850252
title: Additional file 12: of Performance evaluation of commercial library construction kits for PCR-based targeted sequencing using a unique molecular identifier

description: List of HapMap cell lines used as the input DNA sources for performance evaluations of library construction kits. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7850255
title: Additional file 2: of Prognostic models for breast cancer: a systematic review

description: Model development studies that were excluded because of no full text. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7850258
title: Additional file 7: of Multispecies genome-wide analysis defines the MAP3K gene family in Gossypium hirsutum and reveals conserved family expansions

description: Table containing collinear relationships in G. hirsutum as predicted by McScanX. (XLSX 61 kb)
DOI: 10.6084/m9.figshare.7850267.v1
title: Additional file 8: of Multispecies genome-wide analysis defines the MAP3K gene family in Gossypium hirsutum and reveals conserved family expansions

description: OrthoMCL generated clusters for all proteins in 7 plant species. (TXT 11283 kb)
DOI: 10.6084/m9.figshare.7850261.v1
title: Additional file 1: of Performance evaluation of commercial library construction kits for PCR-based targeted sequencing using a unique molecular identifier

description: Characteristics of the five kits and QC metrics of the sequencing data. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7850249
title: Additional file 6: of Multispecies genome-wide analysis defines the MAP3K gene family in Gossypium hirsutum and reveals conserved family expansions

description: Table S1. Table containing the Gossypium hirsutum transcriptome analysis results. The first sheet has all genes that display at least a 50% change in transcription compared to a control. The second sheet highlights all genes that show at least a 20% change in regulation compared to a control. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.7850255.v1
title: Additional file 2: of Prognostic models for breast cancer: a systematic review

description: Model development studies that were excluded because of no full text. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7850258.v1
title: Additional file 7: of Multispecies genome-wide analysis defines the MAP3K gene family in Gossypium hirsutum and reveals conserved family expansions

description: Table containing collinear relationships in G. hirsutum as predicted by McScanX. (XLSX 61 kb)
DOI: 10.6084/m9.figshare.7850243
title: Additional file 5: of Multispecies genome-wide analysis defines the MAP3K gene family in Gossypium hirsutum and reveals conserved family expansions

description: Table containing McScanX predicted gene duplication origins for MAP3Ks in examined species. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.7850246
title: Additional file 1: of Prognostic models for breast cancer: a systematic review

description: Search terms. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7850249.v1
title: Additional file 6: of Multispecies genome-wide analysis defines the MAP3K gene family in Gossypium hirsutum and reveals conserved family expansions

description: Table S1. Table containing the Gossypium hirsutum transcriptome analysis results. The first sheet has all genes that display at least a 50% change in transcription compared to a control. The second sheet highlights all genes that show at least a 20% change in regulation compared to a control. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.7850252.v1
title: Additional file 12: of Performance evaluation of commercial library construction kits for PCR-based targeted sequencing using a unique molecular identifier

description: List of HapMap cell lines used as the input DNA sources for performance evaluations of library construction kits. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7850234
title: Additional file 4: of Multispecies genome-wide analysis defines the MAP3K gene family in Gossypium hirsutum and reveals conserved family expansions

description: Figure S1. Cladograms of identified ZIKs. Image of maximum likelihood tree of ZIKs beside representation of polypeptide sequence with major functional domains identified. Figure S2. Cladograms of identified MEKKs. Image of maximum likelihood tree of MEKKs beside representation of polypeptide sequence with major functional domains identified. Figure S3. Cladograms of identified RAFs. Image of maximum likelihood tree of RAFs beside representation of polypeptide sequence with major functional domains identified. (ZIP 14020 kb)
DOI: 10.6084/m9.figshare.7850237
title: Additional file 11: of Prognostic models for breast cancer: a systematic review

description: Studies that compared models by modelsâ developers. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7850243.v1
title: Additional file 5: of Multispecies genome-wide analysis defines the MAP3K gene family in Gossypium hirsutum and reveals conserved family expansions

description: Table containing McScanX predicted gene duplication origins for MAP3Ks in examined species. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.7850246.v1
title: Additional file 1: of Prognostic models for breast cancer: a systematic review

description: Search terms. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7850231
title: Additional file 10: of Performance evaluation of commercial library construction kits for PCR-based targeted sequencing using a unique molecular identifier

description: Summary of false negative calls when using various input DNA amounts. Listed positions are not detected in each condition. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.7850237.v1
title: Additional file 11: of Prognostic models for breast cancer: a systematic review

description: Studies that compared models by modelsâ developers. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7850222
title: Additional file 2: of Multispecies genome-wide analysis defines the MAP3K gene family in Gossypium hirsutum and reveals conserved family expansions

description: Table describing previously identified, presently excluded MAP3Ks and why they were excluded along with FIMO analysis of excluded hits. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.7850225
title: Additional file 3: of Multispecies genome-wide analysis defines the MAP3K gene family in Gossypium hirsutum and reveals conserved family expansions

description: Table containing motif conservation in MEKKs and RAFs with lowered FIMO stringency. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.7850228
title: Additional file 10: of Prognostic models for breast cancer: a systematic review

description: Studies that compared models by independent researchers. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7850234.v1
title: Additional file 4: of Multispecies genome-wide analysis defines the MAP3K gene family in Gossypium hirsutum and reveals conserved family expansions

description: Figure S1. Cladograms of identified ZIKs. Image of maximum likelihood tree of ZIKs beside representation of polypeptide sequence with major functional domains identified. Figure S2. Cladograms of identified MEKKs. Image of maximum likelihood tree of MEKKs beside representation of polypeptide sequence with major functional domains identified. Figure S3. Cladograms of identified RAFs. Image of maximum likelihood tree of RAFs beside representation of polypeptide sequence with major functional domains identified. (ZIP 14020 kb)
DOI: 10.6084/m9.figshare.7850222.v1
title: Additional file 2: of Multispecies genome-wide analysis defines the MAP3K gene family in Gossypium hirsutum and reveals conserved family expansions

description: Table describing previously identified, presently excluded MAP3Ks and why they were excluded along with FIMO analysis of excluded hits. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.7850225.v1
title: Additional file 3: of Multispecies genome-wide analysis defines the MAP3K gene family in Gossypium hirsutum and reveals conserved family expansions

description: Table containing motif conservation in MEKKs and RAFs with lowered FIMO stringency. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.7850228.v1
title: Additional file 10: of Prognostic models for breast cancer: a systematic review

description: Studies that compared models by independent researchers. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7850231.v1
title: Additional file 10: of Performance evaluation of commercial library construction kits for PCR-based targeted sequencing using a unique molecular identifier

description: Summary of false negative calls when using various input DNA amounts. Listed positions are not detected in each condition. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.7850213
title: Additional file 10: of Multispecies genome-wide analysis defines the MAP3K gene family in Gossypium hirsutum and reveals conserved family expansions

description: Table containing FIMO predicted motif conservation hits in all examined MAP3Ks. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.7850213.v1
title: Additional file 10: of Multispecies genome-wide analysis defines the MAP3K gene family in Gossypium hirsutum and reveals conserved family expansions

description: Table containing FIMO predicted motif conservation hits in all examined MAP3Ks. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.7850216
title: Additional file 1: of Multispecies genome-wide analysis defines the MAP3K gene family in Gossypium hirsutum and reveals conserved family expansions

description: Zipped file containing two subfolders and an excel spreadsheet of all identified MAP3Ks with their longest transcript variants. The “HMM_results” file holds the HMMsearch output files for each MAP3K subfamily with relevant orthogroups identification highlighted. The “HMMs” folder holds the HMMs used for each MAP3K subfamily. (ZIP 3956 kb)
DOI: 10.6084/m9.figshare.7850216.v1
title: Additional file 1: of Multispecies genome-wide analysis defines the MAP3K gene family in Gossypium hirsutum and reveals conserved family expansions

description: Zipped file containing two subfolders and an excel spreadsheet of all identified MAP3Ks with their longest transcript variants. The “HMM_results” file holds the HMMsearch output files for each MAP3K subfamily with relevant orthogroups identification highlighted. The “HMMs” folder holds the HMMs used for each MAP3K subfamily. (ZIP 3956 kb)
DOI: 10.6084/m9.figshare.7850162
title: MOESM1 of Exosome microRNA signatures in patients with complex regional pain syndrome undergoing plasma exchange

description: Additional file 1: Table S1. Raw data for expression of serum exosomal miRNAs in CRPS patients. Raw data and relative gene expression analysis following Taqman low density array for the estimation of 754 miRNAs in the serum exosomes of CRPS patients before and after PE.
DOI: 10.6084/m9.figshare.7850168
title: MOESM2 of Exosome microRNA signatures in patients with complex regional pain syndrome undergoing plasma exchange

description: Additional file 2: Table S2. Plasma levels of cytokines in CRPS patients following plasma exchange (PE). Plasma levels of Fractalkine (0.33), IFNγ (0.47), IL-10 (0.51), MIP-3a (0.79), IL-17A (0.31), IL-1β, IL-2 (0.18), IL-4 (1.07), IL-6 (0.11), IL-8 (0.12),MIP-1β (0.69), TNFα (0.16), IL-13 (0.24), and IL-23 (3.06) were determined using MILLIPLEX MAP Human High Sensitivity T Cell Panel. Included in brackets next to each analyte is the sensitivity in pg/mL of the assay used to determine its plasma level.
DOI: 10.6084/m9.figshare.7850162.v1
title: MOESM1 of Exosome microRNA signatures in patients with complex regional pain syndrome undergoing plasma exchange

description: Additional file 1: Table S1. Raw data for expression of serum exosomal miRNAs in CRPS patients. Raw data and relative gene expression analysis following Taqman low density array for the estimation of 754 miRNAs in the serum exosomes of CRPS patients before and after PE.
DOI: 10.6084/m9.figshare.7850168.v1
title: MOESM2 of Exosome microRNA signatures in patients with complex regional pain syndrome undergoing plasma exchange

description: Additional file 2: Table S2. Plasma levels of cytokines in CRPS patients following plasma exchange (PE). Plasma levels of Fractalkine (0.33), IFNγ (0.47), IL-10 (0.51), MIP-3a (0.79), IL-17A (0.31), IL-1β, IL-2 (0.18), IL-4 (1.07), IL-6 (0.11), IL-8 (0.12),MIP-1β (0.69), TNFα (0.16), IL-13 (0.24), and IL-23 (3.06) were determined using MILLIPLEX MAP Human High Sensitivity T Cell Panel. Included in brackets next to each analyte is the sensitivity in pg/mL of the assay used to determine its plasma level.
DOI: 10.6084/m9.figshare.7850090
title: Additional file 1: of External body temperature and vigilance to a lesser extent track variation in predation risk in domestic fowls

description: Table S1. Data used for this project in excel format. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.7850090.v1
title: Additional file 1: of External body temperature and vigilance to a lesser extent track variation in predation risk in domestic fowls

description: Table S1. Data used for this project in excel format. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.7850045
title: MOESM2 of Protein expression in female salivary glands of pyrethroid-susceptible and resistant strains of Aedes aegypti mosquitoes

description: Additional file 2: Table S1. The mass list (list of peptides) found for each major spot analyzed on the three mosquito strains.
DOI: 10.6084/m9.figshare.7850045.v1
title: MOESM2 of Protein expression in female salivary glands of pyrethroid-susceptible and resistant strains of Aedes aegypti mosquitoes

description: Additional file 2: Table S1. The mass list (list of peptides) found for each major spot analyzed on the three mosquito strains.
DOI: 10.6084/m9.figshare.7850009
title: Additional file 1: of FTO haplotyping underlines high obesity risk for European populations

description: Table S1. List of GWAS publicationsÂ for the 15 SNPs considered. Table S2. Description of 1000G populations employed. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.7850012
title: Additional file 1: of HIV-1 drug resistance testing is essential for heavily-treated patients switching from first- to second-line regimens in resource-limited settings: evidence from routine clinical practice in Cameroon

description: SMF1 - accession numbers. (TXT 33 kb)
DOI: 10.6084/m9.figshare.7850015
title: Additional file 2: of HIV-1 drug resistance testing is essential for heavily-treated patients switching from first- to second-line regimens in resource-limited settings: evidence from routine clinical practice in Cameroon

description: SMF2 - GenBank Submissions grp 6,957,604. (TXT 90 kb)
DOI: 10.6084/m9.figshare.7850015.v1
title: Additional file 2: of HIV-1 drug resistance testing is essential for heavily-treated patients switching from first- to second-line regimens in resource-limited settings: evidence from routine clinical practice in Cameroon

description: SMF2 - GenBank Submissions grp 6,957,604. (TXT 90 kb)
DOI: 10.6084/m9.figshare.7850003
title: Additional file 8: of Differential isoform expression and alternative splicing in sex determination in mice

description: Chromosome distribution profile for clusters of differentially expressed genes and comparison with homologous synteny blocks (HSBs). Distribution of clusters identified with Cluster Locator [15] upregulated in the gonads of E11 females (A), E12 females (B) E11 males (C) and E12 males (D). Only clusters &gt; 5 genes are represented in the figures. Genes also present in HSBs are highlighted inside a black box. (XLSX 588 kb)
DOI: 10.6084/m9.figshare.7850006
title: Additional file 9: of Differential isoform expression and alternative splicing in sex determination in mice

description: Differentially expressed isoforms (DEI) in males vs females at E11 (A), at E12 (B) and at E11 vs E12 in males (C) and females (D). (XLSX 2931 kb)
DOI: 10.6084/m9.figshare.7850009.v1
title: Additional file 1: of FTO haplotyping underlines high obesity risk for European populations

description: Table S1. List of GWAS publicationsÂ for the 15 SNPs considered. Table S2. Description of 1000G populations employed. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.7850012.v1
title: Additional file 1: of HIV-1 drug resistance testing is essential for heavily-treated patients switching from first- to second-line regimens in resource-limited settings: evidence from routine clinical practice in Cameroon

description: SMF1 - accession numbers. (TXT 33 kb)
DOI: 10.6084/m9.figshare.7849997
title: Additional file 6: of Differential isoform expression and alternative splicing in sex determination in mice

description: List of genes upregulated in males or females at E11 and E12 genital ridges (B, E, H, K), upregulated in E11 or E12 in male or female genital ridges (A, D, G, J), and specific genes for E11 and E12 male or female genital ridges (C, F, I, L). (XLS 2301 kb)
DOI: 10.6084/m9.figshare.7850000
title: Additional file 7: of Differential isoform expression and alternative splicing in sex determination in mice

description: List of genes (A) and isoforms (B) showing male- or female biased expression. (XLSX 481 kb)
DOI: 10.6084/m9.figshare.7850006.v1
title: Additional file 9: of Differential isoform expression and alternative splicing in sex determination in mice

description: Differentially expressed isoforms (DEI) in males vs females at E11 (A), at E12 (B) and at E11 vs E12 in males (C) and females (D). (XLSX 2931 kb)