cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.94284.v1
title: SunPy: Python for Solar Physics Data Analysis

description: Python has seen widespread adoption among the scientific community in recent years resulting in a wide range of software being written for everything from numerical computation and machine learning to spectral analysis and visualization. SunPy is a free and open-source software library for working with solar and heliospheric datasets, written in the Python programming language. It provides an alternative to the IDL-based SolarSoft (SSW) solar data analysis environment. SunPy has map objects that allow simple overplotting of data from multiple two-dimensional image FITS files; time-series objects that allow overplotting of multiple lightcurves, and initial support for working with spectrogram data. SunPy provides integration with online services such as The Virtual Solar Observatory (VSO), The Heliophysics Event Knowledgebase (HEK), and Helioviewer.org. SunPy also provides functionality that is not currently available in SSW such as advanced time series manipulation routines and support for working with solar data stored using JPEG 2000. We give some examples of what can be done in SunPy, and show how Python-based solar data-analysis can take advantage of many different data analysis tools not readily available in SSWIDL. We also discuss future goals for the project and ways for interested users can become involved in the planning and development of SunPy. <br>(Presented at SIPWork VI meeting in Bozeman, MT)
DOI: 10.6084/m9.figshare.94279.v1
title: Gaussian Job Archive for C6H9(1-)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.94281.v1
title: Juvenile dispersal of Bonelli's eagle and Golden eagle

description: This paper was published in "El Serenet-Revista de la Societat Valenciana d'Ornitologia" (Journal of the Ornithological Society of Valencia, Spain). The full reference is: PAVÓN, D., LÓPEZ-LÓPEZ, P., LIMIÑANA, R., URIOS, V. 2010. Dispersión juvenil y reclutamiento a la fracción adulta en juveniles de Águila-azor perdicera (<em>Aquila fasciata</em>) y Águila real (<em>Aquila chrysaetos</em>). <strong><em>El Serenet </em></strong>7: 19-28. <strong></strong>
DOI: 10.6084/m9.figshare.94280.v1
title: Gaussian Job Archive for C6H9(1-)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.94268
title: Gaussian Job Archive for C2H6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.94269
title: Gaussian Job Archive for C6H5NO

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.94269.v1
title: Gaussian Job Archive for C6H5NO

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.94267
title: Gaussian Job Archive for C2H6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.94268.v1
title: Gaussian Job Archive for C2H6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.94267.v1
title: Gaussian Job Archive for C2H6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.94257
title: Aligner execution scripts

description: BASH scripts to process SAM files and perform variant calling with GATK
DOI: 10.6084/m9.figshare.94258
title: Alignment processing and variant calling scripts

description: BASH scripts to perform alignment of reads to reference
DOI: 10.6084/m9.figshare.94259
title: Y chromosome haplotypes Central Europe, Alps, Tyrol

description: Collection of haplotype datasets with Y-STR-markers formatted in FTDNA-table style. This allows to use them in Genetic Genealogy tools like McGee Y-Utility. Most haplotypes originate from the Y-STR profile surveys of laboratories with forensic background (12 or 17 STR markers). The spreadsheets in the appendix of Y-chromosome studies have been copied and adapted: arrangement of markers for FTDNA (2012), and Y GATA H4 conversion to FTDNA by NIST (-1). In addition, some Y-DNA sub-haplogroups are predicted. The prediction comes from the comparison with public data from FTDNA projects and is highly speculative. <br><br>Attention: this fileset is work in progress. Comments appreciated, especially about possible additional datasets. <br> Edit 28. Nov. 2012: added Rebala et al 2012 and Erhart et al 2012 + file renaming<br>Edit 5 Nov. 2012: added prediction corrections for J Haplogroup in Niederstaetter et al 2012<br>13 Aug. 2012: initial release with Thomas et al 2007 and Niederstaetter et al 2012<br>
DOI: 10.6084/m9.figshare.94257.v1
title: Aligner execution scripts

description: BASH scripts to process SAM files and perform variant calling with GATK
DOI: 10.6084/m9.figshare.94258.v1
title: Alignment processing and variant calling scripts

description: BASH scripts to perform alignment of reads to reference
DOI: 10.6084/m9.figshare.94256
title: Gaussian Job Archive for C11H19Cl2NaO5S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.94256.v1
title: Gaussian Job Archive for C11H19Cl2NaO5S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.94259.v1
title: Y chromosome haplotypes Central Europe

description: Collection of haplotype datasets with Y-STR-markers formatted in FTDNA-table style. This allows to use them in Genetic Genealogy tools like McGee Y-Utility. Most haplotypes originate from the Y-STR profile surveys of laboratories with forensic background (12 or 17 STR markers). The spreadsheets in the appendix of Y-chromosome studies have been copied and adapted: arrangement of markers for FTDNA (2012), and Y GATA H4 conversion to FTDNA by NIST (-1). In addition, some Y-DNA sub-haplogroups are predicted. The prediction comes from the comparison with public data from FTDNA projects and is highly speculative. <br><br>Attention: this fileset is work in progress. Comments appreciated, especially about possible additional datasets. Edit Nov. 2012: added prediction corrections for J Haplogroup<br>
DOI: 10.6084/m9.figshare.94259.v2
title: Y chromosome haplotypes Central Europe

description: Collection of haplotype datasets with Y-STR-markers formatted in FTDNA-table style. This allows to use them in Genetic Genealogy tools like McGee Y-Utility. Most haplotypes originate from the Y-STR profile surveys of laboratories with forensic background (12 or 17 STR markers). The spreadsheets in the appendix of Y-chromosome studies have been copied and adapted: arrangement of markers for FTDNA (2012), and Y GATA H4 conversion to FTDNA by NIST (-1). In addition, some Y-DNA sub-haplogroups are predicted. The prediction comes from the comparison with public data from FTDNA projects and is highly speculative. <br><br>Attention: this fileset is work in progress. Comments appreciated, especially about possible additional datasets. Edit Nov. 2012: added prediction corrections for J Haplogroup<br>
DOI: 10.6084/m9.figshare.94259.v3
title: Y chromosome haplotypes Central Europe, Alps, Tyrol

description: Collection of haplotype datasets with Y-STR-markers formatted in FTDNA-table style. This allows to use them in Genetic Genealogy tools like McGee Y-Utility. Most haplotypes originate from the Y-STR profile surveys of laboratories with forensic background (12 or 17 STR markers). The spreadsheets in the appendix of Y-chromosome studies have been copied and adapted: arrangement of markers for FTDNA (2012), and Y GATA H4 conversion to FTDNA by NIST (-1). In addition, some Y-DNA sub-haplogroups are predicted. The prediction comes from the comparison with public data from FTDNA projects and is highly speculative. <br><br>Attention: this fileset is work in progress. Comments appreciated, especially about possible additional datasets. <br> Edit 28. Nov. 2012: added Rebala et al 2012 and Erhart et al 2012 + file renaming<br>Edit 5 Nov. 2012: added prediction corrections for J Haplogroup in Niederstaetter et al 2012<br>13 Aug. 2012: initial release with Thomas et al 2007 and Niederstaetter et al 2012<br>
DOI: 10.6084/m9.figshare.94237.v1
title: J-L26 modal sub-haplotype NJ tree

description: J-L26* (J2a1/3/4*) clade prediction by STR-analysis using modal STRs from the J-Project (min. 37 markers, retrieved Aug. 2012). Comparison of 5 MR (mutation rate models): FTDNA, Burgarella, Constant, McGee Custom, McDonald. <br><br>My conclusions - in parentesis singular haplotypes and/or low res.: <br>Possible Macro-Groups by multiple modal STR-analysis: <br>A) h L24, (f M419)<br>B) d M319, E, G, I<br>C) (e M339), C, b M67, a M47, g P81, i L198, B, L1064, c M68, F, D, A2, A1<br><br>Most distant Groups: h L24 versus D, A2, A1 McGee Y-Utility May 1, 2011, Generation PHYLIP data, SplitsTree Newick file geneation, FigTree PDF output edited with Inkscape.
DOI: 10.6084/m9.figshare.94225
title: Genetic Genealogy - Presentation

description: In May of <strong>2010</strong>, the author gave a presentation at TEDx Lansing about Genetic Genealogy. The video and associated slide set are presented here.
DOI: 10.6084/m9.figshare.94225.v1
title: Genetic Genealogy - Presentation

description: In May of <strong>2010</strong>, the author gave a presentation at TEDx Lansing about Genetic Genealogy. The video and associated slide set are presented here.
DOI: 10.6084/m9.figshare.94227.v1
title: The Medicinal Chemistry of the Alkaloids of Curcuma longa

description: In March of <strong>2008</strong>, the author presented a public <em>Literature Talk</em> about "The Medicinal Chemistry of the Alkaloids of <em>Curcuma longa</em>", which is herewith shared with the world. <strong>Related Literature</strong> "Curcumin and Cancer Cells: How Many Ways Can Curry Kill Tumor Cells Selectively?" <em>AAPS J.</em> <strong>2009</strong>, <em>11</em>, 495–510 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2758121/
DOI: 10.6084/m9.figshare.94219.v1
title: NSF Doctoral Dissertation Improvement Grant proposal

description: Unfunded NSF DDIG proposal.
DOI: 10.6084/m9.figshare.94214
title: DeansEtAlSupplementaryData.xls

description: In this spreadsheet we score arthropod systematics publications (published between 2007–2012 in <em>Acta Zoologica</em>, <em>Insect Systematics & Evolution</em>, <em>Invertebrate Systematics</em>, <em>Systematic Biology</em>, <em>Systematic Entomology</em>, <em>Zoological Journal of the Linnean Society</em>, and <em>Zoologica Scripta)</em> for a number of metrics related to how morphological data are handled and communicated. We use this cursory review of the literature in an <em>Invertebrate Systematics</em> viewpoint paper (Evolutionary phenomics and the emerging enlightenment of arthropod systematics), in which we argue for the integration of more internal soft part characters, new methods of imaging, and new ways of communicating morphological data.
DOI: 10.6084/m9.figshare.94214.v1
title: DeansEtAlSupplementaryData.xls

description: In this spreadsheet we score arthropod systematics publications (published between 2007–2012 in <em>Acta Zoologica</em>, <em>Insect Systematics & Evolution</em>, <em>Invertebrate Systematics</em>, <em>Systematic Biology</em>, <em>Systematic Entomology</em>, <em>Zoological Journal of the Linnean Society</em>, and <em>Zoologica Scripta)</em> for a number of metrics related to how morphological data are handled and communicated. We use this cursory review of the literature in an <em>Invertebrate Systematics</em> viewpoint paper (Evolutionary phenomics and the emerging enlightenment of arthropod systematics), in which we argue for the integration of more internal soft part characters, new methods of imaging, and new ways of communicating morphological data.
DOI: 10.6084/m9.figshare.94216.v1
title: Unfunded grant proposal for the Forest Shreeve Award

description: Unfunded grant proposal for the Forest Shreeve Award in 2007.
DOI: 10.6084/m9.figshare.94217.v1
title: Unfunded Lewis and Clark grant proposal

description: Unfunded grant proposal for the Lewis and Clark fund.
DOI: 10.6084/m9.figshare.94201
title: Gaussian Job Archive for C11H19Cl2NaO5S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.94201.v1
title: Gaussian Job Archive for C11H19Cl2NaO5S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.94138
title: Gaussian Job Archive for C4H2BrF

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.94138.v1
title: Gaussian Job Archive for C4H2BrF

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.94132
title: Gaussian Job Archive for C6H5NO

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.94132.v1
title: Gaussian Job Archive for C6H5NO

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.94136.v1
title: Exact and Near-miss Clone Detection in Spreadsheets

description: Spreadsheets are used extensively in business, in many domains. The applicability of software engineering methods to spreadsheets has been a topic of research for several years, but the main focus has been on analyzing the formulas, and not on analyzing the data in the spreadsheets. One of the factors that plays a role in spreadsheet data quality is the occurrence of clones in the spreadsheet data. Clones in data are caused by copy-pasting. This is a very common practice in spreadsheet use, however, it can have a negative impact on the spreadsheet's quality, since 1) editing the copied data needs to be done in multiple places increasing maintenance effort and 2) when editing, some copies might be forgotten, leading to errors. Clone detection has been proven useful in the realm of source code analysis, in two different forms: exact clones, and clones that differ slightly, called near-miss clones. Because of the success of clone detection and removal in source code, it seems feasible to research the applicability of both techniques on clones in spreadsheet data. Our work shows that this is a promising avenue.}
DOI: 10.6084/m9.figshare.94137.v1
title: 2008 BBSRC Tools and Resources Development Fund Application

description: 2008 BBSRC Tools and Resources Development Fund application. Awarded.
DOI: 10.6084/m9.figshare.94125
title: Gaussian Job Archive for C2H6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.94124
title: Gaussian Job Archive for CTi7(2+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.94130.v1
title: 2008 NERC New Investigator Grant Application

description: January 2008 NERC New Investigator Application. Awarded (NERC ref: NE/G000158/1). Reformulation of project unsuccessfully submitted to BBSRC in Aug 2007 (see http://dx.doi.org/10.6084/m9.figshare.94129)
DOI: 10.6084/m9.figshare.94124.v1
title: Gaussian Job Archive for CTi7(2+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.94125.v1
title: Gaussian Job Archive for C2H6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.94110
title: Gaussian Job Archive for B2(2-)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.94111
title: Gaussian Job Archive for B2(2-)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.94129.v1
title: 2007 BBSRC Responsive Mode Grant Application

description: August 2007 BBSRC Responsive Mode Application for consideration under New Investigator status. Not awared, but related application was awarded by NERC (see http://dx.doi.org/10.6084/m9.figshare.94130)
DOI: 10.6084/m9.figshare.94111.v1
title: Gaussian Job Archive for B2(2-)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.94110.v1
title: Gaussian Job Archive for B2(2-)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.94096.v1
title: SmartRoot presentation

description: Presentation of the root image analysis software SmartRoot. SmartRoot can be downloaded here: http://www.uclouvain.be/en-smartroot
DOI: 10.6084/m9.figshare.94095.v1
title: SmartRoot gets topological

description: Presentation of the new features of the root image analysis software SmartRoot. Presentation made in 2010
DOI: 10.6084/m9.figshare.94031
title: Multiple Sequence Alignment of Influenza Hemagglutinin Protein Sequences

description: The NCBI influenza virus resource was used to download 11,981 full-length, non-redundant Influenza hemagglutinin protein sequences (August 2011). Homologs were aligned using MUSCLE and saved in MSF format. Sequence names formatted for use by JProfileGrid v2.0 grep filtering feature. Dataset for reference: Roca AI, et al. ProfileGrids Solve the Large Alignment Visualization Problem: Influenza Hemagglutinin Example. F1000Research 2:2 (2013)
DOI: 10.6084/m9.figshare.94032
title: Meta data for Multiple Sequence Alignment of Influenza Hemagglutinin Protein Sequences

description: The NCBI influenza virus resource was used to download 11,981 full-length, non-redundant Influenza hemagglutinin protein sequences (August 2011). Homologs were aligned using MUSCLE and saved in MSF format. Dataset for reference: Roca AI, et al. ProfileGrids Solve the Large Alignment Visualization Problem: Influenza Hemagglutinin Example. F1000Research 2:2 (2013)
DOI: 10.6084/m9.figshare.94029
title: Dataset for Measuring Spreadsheet Formula Understandability

description: Dataset going with the paper Measuring Spreadsheet Formula Understandability
DOI: 10.6084/m9.figshare.94018
title: LakeTroutMuscleTranscriptome FASTA

description: Lake trout muscle transcriptome consensus sequences fasta file 454 pyrosequences from pooled Lean and Siscowet lake trout De Novo assmebly
DOI: 10.6084/m9.figshare.94031.v1
title: Multiple Sequence Alignment of Influenza Hemagglutinin Protein Sequences

description: The NCBI influenza virus resource was used to download 11,981 full-length, non-redundant Influenza hemagglutinin protein sequences (August 2011). Homologs were aligned using MUSCLE and saved in MSF format. Dataset for reference: Roca AI, et al. ProfileGrids Solve the Large Alignment Visualization Problem: Influenza Hemagglutinin Example. submitted.
DOI: 10.6084/m9.figshare.94032.v1
title: Meta data for Multiple Sequence Alignment of Influenza Hemagglutinin Protein Sequences

description: The NCBI influenza virus resource was used to download 11,981 full-length, non-redundant Influenza hemagglutinin protein sequences (August 2011). Homologs were aligned using MUSCLE and saved in MSF format. Dataset for reference: Roca AI, et al. ProfileGrids Solve the Large Alignment Visualization Problem: Influenza Hemagglutinin Example. submitted.
DOI: 10.6084/m9.figshare.94032.v2
title: Meta data for Multiple Sequence Alignment of Influenza Hemagglutinin Protein Sequences

description: The NCBI influenza virus resource was used to download 11,981 full-length, non-redundant Influenza hemagglutinin protein sequences (August 2011). Homologs were aligned using MUSCLE and saved in MSF format. Dataset for reference: Roca AI, et al. ProfileGrids Solve the Large Alignment Visualization Problem: Influenza Hemagglutinin Example. F1000Research 2:2 (2013)
DOI: 10.6084/m9.figshare.94017
title: LakeTroutMuscleTranscriptomeAnnotations

description: Lake Trout (pooled Lean and Siscowet) 454 muscle transcriptome annotations 7703 (listed) of 9364 contig consensus sequences had top hits using blastx consensus sequences have SwissPro ID, e-value, and SwissPro gene description
DOI: 10.6084/m9.figshare.94017.v4
title: LakeTroutMuscleTranscriptomeAnnotations

description: Lake Trout (pooled Lean and Siscowet) 454 muscle transcriptome annotations 7703 (listed) of 9364 contig consensus sequences had top hits using blastx consensus sequences have SwissPro ID, e-value, and SwissPro gene description
DOI: 10.6084/m9.figshare.94018.v3
title: LakeTroutMuscleTranscriptome FASTA

description: Lake trout muscle transcriptome consensus sequences fasta file 454 pyrosequences from pooled Lean and Siscowet lake trout De Novo assmebly
DOI: 10.6084/m9.figshare.94017.v3
title: LakeTroutMuscleTranscriptomeAnnotations

description: Lake Trout muscle transcriptome annotations no duplicates removed consensus sequences have SwissPro ID, Gene Ontology, and GOslim terms
DOI: 10.6084/m9.figshare.94018.v2
title: LakeTroutMuscleTranscriptome FASTA

description: Lake trout muscle transcriptome consensus sequences fasta file 454 pyrosequences from Lean and Siscowet lake trout De Novo assmebly
DOI: 10.6084/m9.figshare.93990
title: Detecting dissonance in clinical and research workflow for translational psychiatric registries

description: XML files of UML models related to the study " Detecting dissonance in clinical and research workflow for translational psychiatric registries" submited for publication at PlosOne Journal.
DOI: 10.6084/m9.figshare.94016.v1
title: Digital pedagogy in three parts: screen casting, course blog, remote guests

description: As presented in Boston University's Fourth Annual Instructional Innovation Conference, March 1st, 2012. Describes the digital pedagogy strategy used by the author in her freshman Introduction to Engineering module titled "Bio-Aerial Locomotion." The strategy is based on three elements: (i) class presentation using digital inking and media-rich slides, live recording of screencasts and open online dissemination; (ii) a course blog, with student assignments publicly available online; (iii) a program of distinguished invited speakers participating in the course via Skype. The course screencasts, recorded live, are available freely from iTunes U. See link below.
DOI: 10.6084/m9.figshare.93989.v1
title: 2012_Zozaya_et_al_ortolan_connec_Ardeola.pdf

description: _
DOI: 10.6084/m9.figshare.93990.v3
title: Detecting dissonance in clinical and research workflow for translational psychiatric registries

description: XML files of UML models related to the study " Detecting dissonance in clinical and research workflow for translational psychiatric registries" submited for publication at PlosOne Journal.
DOI: 10.6084/m9.figshare.93964.v1
title: A Google based detector alien detector

description: Results of an exploratory project aimed to used the Google search statistics as a detector for alien sightings on planet Earth. Published by the WETI institute, comments welcome.
DOI: 10.6084/m9.figshare.93951
title: Gaze Data for the Hollywood2 Action Recognition Data Set

description: Gaze data from 5 subjects watching the Hollywood2 Action Recognition Dataset while performing the action recognition task set out for the challenge. from: Eleonora Vig, Michael Dorr, David Cox (2012) Space-Variant Descriptor Sampling for Action Recognition Based On Saliency and Eye Movements. European Conference on Computer Vision