cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.14288/1.0397762
title: Data from: Automatic segmentation of multiple cardiovascular structures from cardiac computed tomography angiography images using deep learning

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;&lt;b&gt;Objectives: &lt;/b&gt;To develop, demonstrate and evaluate an automated deep learning method for multiple cardiovascular structure segmentation.&lt;/p&gt; &lt;p&gt;&lt;b&gt;Background: &lt;/b&gt;Segmentation of cardiovascular images is resource-intensive. We design an automated deep learning method for the segmentation of multiple structures from Coronary Computed Tomography Angiography (CCTA) images.&lt;/p&gt; &lt;p&gt;&lt;b&gt;Methods: &lt;/b&gt;Images from a multicenter registry of patients that underwent clinically-indicated CCTA were used. The proximal ascending and descending aorta (PAA, DA), superior and inferior vena cavae (SVC, IVC), pulmonary artery (PA), coronary sinus (CS), right ventricular wall (RVW) and left atrial wall (LAW) were annotated as ground truth. The U-net-derived deep learning model was trained, validated and tested in a 70:20:10 split.&lt;/p&gt; &lt;p&gt;&lt;b&gt;Results: &lt;/b&gt;The dataset comprised 206 patients, with 5.130 billion pixels. Mean age was 59.9 ± 9.4 yrs., and was 42.7% female. An overall median Dice score of 0.820 (0.782, 0.843) was achieved. Median Dice scores for PAA, DA, SVC, IVC, PA, CS, RVW and LAW were 0.969 (0.979, 0.988), 0.953 (0.955, 0.983), 0.937 (0.934, 0.965), 0.903 (0.897, 0.948), 0.775 (0.724, 0.925), 0.720 (0.642, 0.809), 0.685 (0.631, 0.761) and 0.625 (0.596, 0.749) respectively. Apart from the CS, there were no significant differences in performance between sexes or age groups.&lt;/p&gt; &lt;p&gt;&lt;b&gt;Conclusions: &lt;/b&gt;An automated deep learning model demonstrated segmentation of multiple cardiovascular structures from CCTA images with reasonable overall accuracy when evaluated on a pixel level.&lt;/p&gt;
DOI: 10.14288/1.0391892
title: Online Gambling in British Columbia: a Descriptive Report on Gambling Participation on the PlayNow.com Platform

description: This Report describes online gambling participation on the British Columbia Lottery Corporation’s PlayNow.com platform, by BC residents in June 2015. Data were provided to the Centre for Gambling Research at UBC (PI: Dr Luke Clark) by BCLC, in a de-identified format and under a confidentiality agreement, in a project that was funded by the BC Ministry of Finance. In this Report, we describe data for five game categories: lottery, eCasino, sports betting, social games (including Keno), and bingo. We focus on behavioural variables reflecting gambling intensity (e.g. total number of bets, total monthly spend). Analyses include an examination of how participation rates vary across the five game categories, and the distribution in engagement across different game categories, including Pareto analyses that describe the proportion of overall gambling activity attributable to the top 20% most engaged gamblers.
DOI: 10.14288/1.0395678
title: Preventable adverse drug events causing hospitalization: Identifying root causes and developing a surveillance and learning system at an urban community hospital, a cross-sectional observational study

description: &lt;b&gt;Background:&lt;/b&gt; To identify root causes of preventable adverse drug events contributing to hospital admission; to develop key messages which identify actions patients/families and healthcare providers can take to prevent common pADEs found; to develop a surveillance learning system for the community. &lt;b&gt;Methods:&lt;/b&gt; Cross-sectional observational study; 120 patients and families, 61 associated healthcare providers were interviewed then root cause analysis was performed to develop key learning messages and an electronic reporting tool was designed. Most common pADE-related medical conditions and their root causes and most common pADE root causes of entire cohort are reported. &lt;b&gt;Results:&lt;/b&gt; Most common pADE-related medical conditions: Chronic obstructive pulmonary disease (COPD)/asthma (13.5%) bleeding (12.5%), hypotension (12%), heart failure (10%), acute kidney injury (5%), pneumonia (5%). Most common root causes were: providers not confirming that patient/family: understands information given (29.2%), how a medication helps them/addressing concerns (16.7%), how to identify if a medication is working (14.1%) or causing a side effect (23.3%); can enact medication changes (7.5%), absence of a sick day management plan (12.5%), and other action plans to help patients respond to changes in their clinical status (10.8%); providers not assessing medication use and monitoring competency (19.2%). Ten key learning messages were developed and a pADE surveillance learning system was implemented. &lt;b&gt;Interpretation:&lt;/b&gt; To prevent pADEs providers need to confirm that patients/families understand: information given, how a medication helps them, how to recognize and respond to side effects, how to enact medication changes and follow action plans; providers should assess patient’s/families’ medication use and monitoring competency.
DOI: 10.14288/1.0391945
title: transORF

description: A tool that takes a FASTA nucleotide file and predicts all open reading frames in all six translation frames. The output is a FASTA amino acid file. This tool is useful for creating a protein library for database searching (where a good prediction is unavailable) if you don’t want to (or can’t) search your MS/MS spectra against a nucleotide library.
DOI: 10.14288/1.0391946
title: PCP-SILAC

description: PCP-SILAC, scripts, instructions and sample data for informatics treatment of PCP-SILAC data.
DOI: 10.14288/1.0391947
title: Attachments to paper Scott et al Molecular System Biology (2017)

description: Attachments to paper Scott et al Molecular System Biology (2017)
DOI: 10.14288/1.0391948
title: JProteomics2014

description: Development of a computation framework for the analysis of protein correlation profiling and spatial proteomics experiments 2014
DOI: 10.14288/1.0391949
title: finalList

description: A tool that takes as input a non-redundant list of peptides identified in a project and compiles a non-redundant list of proteins identified. It will also subtract any peptides coming from a FASTA library of contaminants.
DOI: 10.14288/1.0400494
title: Data and scripts to produce figures from "Neck muscle and head/neck kinematic responses while bracing against the steering wheel during front and rear impacts"

description: This dataset contains all of the data required to produce the figures from the manuscript "Neck muscle and head/neck kinematic responses while bracing against the steering wheel during front and rear impacts". The data and scripts are to be used in the MATLAB environment. "Fice_etal_Bracing_Whiplash_Data.mat" contains the data which are used by the "Fice_etal_Bracing_Whiplash_Plots.m" script to create the plots and tables. The script contains details of the variables and subjects allowing persons with MATLAB knowledge to produce alternative plots of the data. The authors hope these data will be useful for the validation of computational human body models.
DOI: 10.14288/1.0397510
title: Data from: Morphological identification and single-cell genomics of marine diplonemids

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Recent global surveys of marine biodiversity have revealed that a group of organisms known as “marine diplonemids” constitutes one of the most abundant and diverse planktonic lineages [1]. Though discovered over a decade ago [2 and 3], their potential importance was unrecognized, and our knowledge remains restricted to a single gene amplified from environmental DNA, the 18S rRNA gene (small subunit [SSU]). Here, we use single-cell genomics (SCG) and microscopy to characterize ten marine diplonemids, isolated from a range of depths in the eastern North Pacific Ocean. Phylogenetic analysis confirms that the isolates reflect the entire range of marine diplonemid diversity, and comparisons to environmental SSU surveys show that sequences from the isolates range from rare to superabundant, including the single most common marine diplonemid known. SCG generated a total of ∼915 Mbp of assembled sequence across all ten cells and ∼4,000 protein-coding genes with homologs in the Kyoto Encyclopedia of Genes and Genomes (KEGG) orthology database, distributed across categories expected for heterotrophic protists. Models of highly conserved genes indicate a high density of non-canonical introns, lacking conventional GT-AG splice sites. Mapping metagenomic datasets [4] to SCG assemblies reveals virtually no overlap, suggesting that nuclear genomic diversity is too great for representative SCG data to provide meaningful phylogenetic context to metagenomic datasets. This work provides an entry point to the future identification, isolation, and cultivation of these elusive yet ecologically important cells. The high density of nonconventional introns, however, also portends difficulty in generating accurate gene models and highlights the need for the establishment of stable cultures and transcriptomic analyses.
DOI: 10.14288/1.0397511
title: Data from: Experimental confirmation that body size determines mate preference via phenotype matching in a stickleback species pair

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Mate choice by phenotype matching, whereby individuals prefer a mate whose phenotype is similar to their own, should facilitate speciation with gene flow. This is because the genes that control mate signal (the phenotype being matched) also determine the preferred mate signal (‘mate preference’). Speciation is made even easier if phenotype matching is based on a trait under divergent natural selection. In this case, assortative mating should readily evolve as a by-product of divergent selection on the trait. Previous observational studies of assortative mating between sympatric, hybridizing threespine stickleback species (Gasterosteus aculeatus complex) suggested that phenotype matching might occur by body size, a trait under divergent natural selection. To test this we used experimental manipulation of body size to rule out the effects of confounding variables. We found that size-manipulated benthic and limnetic stickleback females prefer mates whose body size more closely matches their own. It is thus likely that assortative mating by phenotype matching has facilitated the origin and persistence of benthic and limnetic threespine sticklebacks in the face of gene flow.
DOI: 10.14288/1.0397512
title: Data from: Biocontrol insect impacts population growth of its target plant species but not an incidentally used nontarget

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Understanding the impact of herbivory on plant populations is a fundamental goal of ecology. Damage to individual plants can be visually striking and affect the fates of individuals, but these impacts do not necessarily translate into population-level differences in vital rates (survival, growth, or fecundity) or population growth rates. In biological control of weeds, quantitative assessments of population-level impacts of released agents on both target invasive plants and native, nontarget plants are needed to inform evaluations of the benefits and risks of releasing agents into new regions. Here we present a 3-yr experimental demographic field study using the European root-feeding biocontrol weevil, Mogulones crucifer, first released in Canada in 1997 to control the invasive weed Cynoglossum officinale (Boraginaceae). Mogulones crucifer is an effective “search and destroy” agent in Canada, but sporadically feeds, oviposits, and develops on native nontarget Boraginaceae. We investigated the population-level impacts of this biocontrol insect on its target weed and a native nontarget plant, Hackelia micrantha (Boraginaceae), by releasing large numbers of weevils into naturally occurring patches of H. micrantha growing isolated from or interspersed with C. officinale. We followed the fates of individual plants on release and nonrelease (control) sites for two transition years, developed matrix models to project population growth rates (λ) for each plant species, and examined the contributions from differences in vital rates to changes in λ using life table response experiments (LTRE). In contrast to studies of the insect–plant interaction in its native range, as a biocontrol agent, M. crucifer increased mortality of C. officinale rosettes in the year immediately following release, depressing the weed's λ to below the population replacement level. However, λ for H. micrantha was never depressed below the replacement level, and any differences between release and nonrelease sites in the nontarget could not be explained by significant contributions from vital rates in the LTRE. This study is the first to simultaneously and experimentally examine target and nontarget population-level impacts of a weed biocontrol insect in the field, and supports the theoretical prediction that plant life history characteristics and uneven herbivore host preferences can interact to produce differences in population-level impacts between target and nontarget plant species.
DOI: 10.14288/1.0397513
title: Data from: Immune response genes and pathogen presence predict migration survival in wild salmon smolts

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;We present the first data to link physiological responses and pathogen presence with subsequent fate during migration of wild salmonid smolts. We tagged and non-lethally sampled gill tissue from sockeye salmon (Oncorhynchus nerka) smolts as they left their nursery lake (Chilko Lake, BC, Canada) to compare gene expression profiles and freshwater pathogen loads with migration success over the first ~1150 km of their migration to the North Pacific Ocean using acoustic telemetry. Fifteen percent of smolts were never detected again after release and these fish had gene expression profiles consistent with an immune response to one or more viral pathogens compared with fish that survived their freshwater migration. Among the significantly up-regulated genes of the fish that were never detected post-release were MX (Interferon-induced GTP-binding Protein Mx) and STAT1 (Signal transducer and activator of transcription 1-alpha/beta), which are characteristic of a type I interferon response to viral pathogens. The most commonly detected pathogen in the smolts leaving the nursery lake was infectious hematopoietic necrosis virus (IHNV). Collectively, these data show that some of the fish assumed to have died after leaving the nursery lake appeared to be responding to one or more viral pathogens and had elevated stress levels that could have contributed to some of the mortality shortly after release. We present the first evidence that changes in gene expression may be predictive of some of the fresh water migration mortality in wild salmonid smolts.
DOI: 10.14288/1.0397514
title: Data from: Tisaniba, a new genus of marpissoid jumping spiders from Borneo (Araneae: Salticidae)

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Six new species of marpissoid jumping spiders from Sarawak, Borneo, are described in the new genus Tisaniba Zhang & Maddison. They are the type species, T. mulu Zhang & Maddison sp. nov., as well as the species T. bijibijan Zhang & Maddison sp. nov., T. dik Zhang & Maddison sp. nov., T. kubah Zhang & Maddison sp. nov., T. selan Zhang & Maddison sp. nov., and T. selasi Zhang & Maddison sp. nov. The spiders are small and brown to black, living in leaf litter in the tropical forest. Phylogenetic analyses based on 28s and 16sND1 genes indicate that they are a distinctive group within the marpissoids. Diagnostic illustrations and photographs of living spiders are provided for all species.
DOI: 10.3886/e240187v1
title: Global Drift Management Market Analysis

description: The global Drift Management Market was valued at USD 3.55
billion in 2024 and is projected to grow to USD 4.11 billion by 2025. The
market is expected to reach USD 8.48 billion by 2030, registering a compound
annual growth rate (CAGR) of 15.6% from 2025 to 2030. This growth is driven by
the widespread adoption of cloud computing, digital transformation initiatives,
and escalating security concerns associated with configuration drift in dynamic
multi-cloud environments.<br><br>For more information visit: https://www.nextmsc.com/report/drift-management-market-ic3519
DOI: 10.15468/dl.k3mju8
title: Occurrence Download

description: A dataset containing 8201 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chrysodeixis eriosoma"
 ]
}

 The dataset includes 8201 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028975-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34944/dspace/392
title: Gen Con Programs
DOI: 10.3535/31x-86p-zwp
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pj1-1wb-x86
title: †Pseudorbitoides trechmanni Douvillé, 1922

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6k5-trg-167
title: Graptolithina Bronn, 1849

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h0z-1b8-b3s
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0ag-vrl-6tt
title: †Pseudorbitoides trechmanni Douvillé, 1922

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tm8-kwy-mln
title: Cetacea Brisson, 1762

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s9x-tjf-4w9
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/436-gtg-xyx
title: Simbirskites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a7v-mb1-fg5
title: Tetragonites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4al-b6z-dq3
title: †Lepidocyclina Gümbel, 1870

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6bl-1xb-dqw
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b2x-9sc-m6k
title: Lamnidae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xkv-zzy-a6k
title: Crioceratites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/33e-y4s-epe
title: Amphistegina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j8w-657-e6t
title: †Neithea Drouët, 1825

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1m1-aj5-acv
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dfm-7mk-lgm
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/56z-vbd-zbk
title: †Pseudorbitoides trechmanni Douvillé, 1922

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c9w-nv0-0s1
title: Elephas Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fg6-be1-3qv
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0w1-2yn-vm7
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6ka-2q2-2mm
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k9h-tka-qy4
title: Cetorhinus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ygy-fnm-dkh
title: Cardium Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1sb-c5z-nfy
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ajv-ys8-bt8
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.eyky62
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Schistura shadiwalensis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023684-250811113504898/datasets/export for details.
DOI: 10.3535/59e-8fv-5wt
title: Hoplobrotula

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zwj-gn8-02t
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/429-slm-y5k
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c3q-akf-1cf
title: †Pseudorbitoides trechmanni Douvillé, 1922

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3tf-vn3-bny
title: Bison C. H. Smith, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29264867.v1
title: Acetate imparts resistance to oxidative stress in <i>Neisseria meningitidis</i>

description: <i>Neisseria meningitidis </i>utilizes host acetate to develop oxidative stress resistance by upregulating the oxidative stress response genes. In presence of acetate meningococci suppress the macrophage ROS and RNS production to persist longer inside the macrophages.
DOI: 10.3535/w9e-w1b-h86
title: †Mesosaccella Chavan, 1947

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wqm-9wz-2ax
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qhc-rly-xsd
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xke-0fs-fr0
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/28q-wea-yj3
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a39-z8t-vna
title: Notoscopelus kroyeri (Malm, 1861)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f23-pa9-m5t
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tmz-td2-bez
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/24v-bea-ddj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j5h-0em-7rw
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/74z-2ws-3mm
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.