cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.45436
title: No Evidence For Extensive Horizontal Gene Transfer In The Genome Of The Tardigrade Hypsibius Dujardini

description: <strong>No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini</strong>

These files accompany the peer-reviewed version of http://dx.doi.org/10.1101/033464

A previous dataset https://zenodo.org/record/45162 accompanied the version of this manuscript at BioRxiv - biorxiv.org/content/early/2015/12/13/033464

This dataset includes all files from https://zenodo.org/record/45162 plus all the Supplemental files, and one additional file HGT_phylogenetic_files.tgz. All files are described in Hypsibius_dujardini_files_README.md

<strong>Abstract</strong>

Tardigrades are meiofaunal ecdysozoans that are key to understanding the origins of Arthropoda. Many species of Tardigrada can survive extreme conditions through cryptobiosis. In a recent paper (Boothby TC <em>et al </em>(2015) Evidence for extensive horizontal gene transfer from the draft genome of a tardigrade. <em>Proc Natl Acad Sci USA</em> 112:15976-15981) the authors concluded that the tardigrade <em>Hypsibius dujardini </em>had an unprecedented proportion (17%) of genes originating through functional horizontal gene transfer (fHGT), and speculated that fHGT was likely formative in the evolution of cryptobiosis. We independently sequenced the genome of <em>H. dujardini</em>. As expected from whole-organism DNA sampling, our raw data contained reads from non-target genomes. Filtering using metagenomics approaches generated a draft <em>H. dujardini</em> genome assembly of 135 Mb with superior assembly metrics to the previously published assembly. Additional microbial contamination likely remains. We found no support for extensive fHGT. Among 23,021 gene predictions we identified 0.2% strong candidates for fHGT from bacteria, and 0.2% strong candidates for fHGT from non-metazoan eukaryotes. Cross-comparison of assemblies showed that the overwhelming majority of HGT candidates in the Boothby <em>et al.</em> genome derived from contaminants. We conclude that fHGT into <em>H. dujardini </em>accounts for at most 1-2% of genes and that the proposal that one sixth of tardigrade genes originate from functional HGT events is an artefact of undetected contamination.
DOI: 10.15468/dl.7kswsy
title: GBIF Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query: TaxonKey: Quillajaceae D. Don. The dataset includes 0 records from 0 constituent datasets:
DOI: 10.4119/unibi/2695588
title: Supplementary Material for "Singing Function: Exploring Auditory Graphs with a Vowel Based Sonification"

description: We present in this paper SingingFunction, a vowel-based sonification strategy for mathematical functions. Within the research field of auditory graphs as representation of scalar functions, we focus in SingingFunction on important aspects of sound design, which allow to better distinguish function shapes as auditory gestalts. SingingFunction features the first vowel-based synthesis for function sonification, and allows for a seamless integration of higher derivatives of the function into a single sound stream. We present further the results of a psycho physical experiment, where we compare the effectiveness of function sonifications based on either mapping only f'(x), or including hirarchically further information about the first derivatives f'(x), or the second derivative f''(x). Further we look at interactivity as an important factor and report interesting effects across all 3 sonification methods by comparing interactive explorations versus simple playback of sonified functions. Finally, we discuss SingingFunction within the context of existing function sonifications, and possible evaluation methods. This website contains supplementary material.
DOI: 10.4119/unibi/2695833
title: Supplementary Material for "Head gesture sonification for supporting social interaction"

description: In this paper we introduce two new methods for real-time sonification of head movements and head gestures. Head gestures such as nodding, shaking the head, etc. are important non-verbal back-channelling signals which facilitate coordination and alignment of communicating interaction partners. Visually impaired persons cannot interpret such non-verbal signals, same as people in mediated communication (e.g. on the phone), or cooperating users whose visual attention is focussed elsewhere. We introduce the idea, the approach, our sensing setup and two different sonification methods. A first preliminary study on the recognition of signals shows that subjects understand gesture type even without prior explanation, and can estimate gesture intensity and frequency with no or little training. #### Sound example S1 continuous excitatory sonification of head gestures of different type, intensity and velocity #### Sound example S2 event-based sonification of head gestures of different type, intensity and velocity #### Video example S3
DOI: 10.4119/unibi/2696642
title: Supplementary Material for "Sonified Aerobics - Interactive Sonification of coordinated body movements"

description: This paper introduces a new hard-/ and software system for the interactive sonification of sports movement involving arm- and leg movements. Two different sonifications are designed to convey rhythmical patterns that become auditory gestalt so that listeners can identify features of the underlying coordinated movement. The Sonification is designed for the application to enable visually impaired users to participate in aerobics exercises, and also to enhance the perception of movements for sighted participants, which is useful for instance if the scene is occluded or the head pos- ture is incompatible with the observation of the instructor or fitness professional who shows the practices in parallel. Furthermore, the system allows to monitor fine couplings in arm/leg coordination while jogging, as auditory feedback may help stabilizing the movement pattern. We present the sensing system, two sonification designs, and interaction examples that lead to coordination-specific sound gestalts. Finally, some qualitative observations are reported from the first uses of the prototype. #### Example S1: (mapping sonification) #### Example S2: (event-based sonification)
DOI: 10.4119/unibi/2698565
title: Supplementary Material for "Methods for Effective Sonification of Clarinetists' Ancillary Gestures"

description: We present the implementation of two different sonifications of ancillary gestures from clarinetists. The sonifications are data driven from the clarinetist's posture which is captured with VICON motion tracking system. Further we develop a simple complementary visual display with a similar information content to match the sonification. The effect of the sonifications with respect to the movement perception is studied in an experiment where test subjects annotate the clarinetists performance represented by various combinations of the resulting uni- and multimodal displays.
DOI: 10.4119/unibi/2698572
title: Supplementary Material for "AudioDB: Get in Touch with Sounds"

description: Digital audio in its various appearances is ubiquitous in our everyday life. Searching and sorting of sounds collected in extensive databases e.g. sampling libraries for musical production or seismographical surveys is difficult and often bound to tight restrictions of the used standard human-computer interface technique of keyboard and mouse. Also the common technique of tagging sounds and other media files has the drawback that it needs descriptive words, which is a not to underestimated difficulty for sounds. We therefore created AudioDB, an intuitive human computer interface to interactively explore sound by representing them as physical artifacts (grains) on a tabletop surface. The system is capable for sonic sorting, grouping and selecting of sounds represented as physical artifacts, and can therefore serve as a basis for discussions on audio-related tasks in working teams. AudioDB however is not a special solution for problems appearing in a dedicated field of work, but is moreover designed as an easy-to-use multi purpose tool for audio-based information. As a side-effect, AudioDB can be used for grounding work on how humans handle digital information that is projected onto physical artifacts.
DOI: 10.4119/unibi/2699299
title: Supplementary Material for "tacTiles for Ambient Intelligence and Interactive Sonification"

description: In this paper we introduce tacTiles, a novel wireless modular tactile sensitive surface element attached to a deformable textile, designed as a lay-on for surfaces such as chairs, sofas, floor or other furniture. tacTiles can be used as interface for human-computer interaction or ambient information systems. We give a full account on the hardware and show applications that demonstrate real-time sonification for process monitoring and biofeedback. Finally we sketch ideas for using tacTiles paired with sonification for interaction games. <br> [Supplementary Material for Building your own tacTiles](https://pub.uni-bielefeld.de/data/2761273)
DOI: 10.4119/unibi/2702594
title: Supplementary Material for "A SuperCollider Class for Vowel Synthesis and its Use for Sonification"

description: In this paper, we present building blocks for the synthesis of vowel sounds in the programming language SuperCollider. We discuss the advantages of using vowel based synthesis, and make a review where it has already been used in sonifications. Then, we describe in detail the main class Vowel which handles all parameters related to the formants that are typically used for vowel synthesis. In order to simplify the handling of the Vowel class, we introduce two auxiliary pseudo Ugens: Formants for additive synthesis, and BPFStack for subtractive synthesis. This introduction of the building blocks is followed by code examples for sound synthesis, which make use of the described classes and their specific features. We finally present sample applications, showing how these building blocks can be used in sonification.
DOI: 10.4119/unibi/2761287
title: Supplementary Material for "A calibration-free head gesture recognition system with online capability"

description: In this paper, we present a calibration-free head gesture recognition system using a motion-sensor-based approach. For data acquisition we conducted a comprehensive study with 10 subjects. We analyzed the resulting head movement data with regard to separability and transferability to new subjects. Ordered means models (OMMs) were used for classification since they provide an easy-to-use, fast, and stable approach to machine learning of time series. In result, we achieved classification rates of 85% - 95% for nodding, head shaking and tilting head gestures and good transferability. Finally, we show first promising attempts towards online recognition. <br> The following video was recorded during the Grand Opening of the Ambient Intelligence Lab, October. 20th, 2009. All rights reserved.
DOI: 10.14469/hpc/286
title: Figure 9, Figure S18. ROCOP of PA/CHO

description: Figure 9, Figure S18. ROCOP of PA/CHO
DOI: 10.14469/hpc/287
title: Figure 9, Figure S18. ROCOP of PA/CHO

description: Figure 9, Figure S18. ROCOP of PA/CHO
DOI: 10.15468/nctfm2
title: Specimens of lichen herbarium KPABG

description: data set
DOI: 10.4119/unibi/2695565
title: Supplementary Material for "Tweetscapes - Real-time Sonification of Twitter Data Streams for Radio Broadcasting"

description: This paper introduces Tweetscapes, a system that transforms message streams from Twitter in real-time into a soundscape that allows the listener to perceive characteristics of twitter messages such as their density, origin, impact, or how topics change over time. Tweetscapes allows the listener to be in touch with the social platform / medium Twitter and to understand its dynamics. We developed Tweetscapes with and for the Sound Art department of Germany-wide radio program Deutschlandradio Kultur where the sonifications are now broadcast several times per week for a few minutes since October 2011. The goal was to create a new sense of media awareness and an example for how sound can support monitoring applications differently than mere alarms. This paper introduces the methods, the ideas, the design, the sounds, and it discusses our experiences with, and novel interaction possibilities offered by Tweetscapes.
DOI: 10.15129/f85771a9-c907-4183-a7ee-847761a5956c
title: Data set for High-Brightness Solution Processed OLEDs employing linear, small molecule emitters

description: Contains NMR, MALDI, microanalysis, UV-vis absorption, photoluminescence, thermogravimetric analysis, differential scanning calorimetry, atomic force microscopy, OLED characterisation, photoluminescence quantum yield and cyclic voltammetry data
DOI: 10.5281/zenodo.46908
title: Data From: Thermal Niches Of Wheat Curl Mite, Aceria Tosichella (Acari: Eriophyidae): Congruence Between Physiological And Geographical Distribution Data

description: <strong>Filename: parm.csv</strong>

Population growth rate of the two wheat curl mite (WCM) lineages reared in different temperatures.


	lineage - mitochondrial lineage (MT-1 or MT-8)
	temp - the rearing temperature (ºC)
	n - no. of replications of the experiment
	r, r.lower, r.upper - estimated intrinsic population growth rate and its 95% confidence intervals


<strong>Filename: aceria.csv</strong>

Data on field sampling localities, WCM abundance and thermal niche suitabiity.


	julian - Julian date
	x, y - geodetic coordinates (EPSG: 2180)
	stems - no. of stems collected
	MT1, MT8- mitochondrial lineage (MT-1 or MT-8)
	TNS1, TNS8 - thermal niche suitability for lineages
description: The study was funded by the National Science Centre in Poland, grant no.
2011/03/B/NZ8/00129
description: {"references": ["Kuczy\u0144ski L, Rector BG, Kiedrowicz A, Lewandowski M, Szyd\u0142o W, et al. (2016) Thermal Niches of Two Invasive Genotypes of the Wheat Curl Mite Aceria tosichella: Congruence between Physiological and Geographical Distribution Data. PLoS ONE 11(4): e0154600. doi: 10.1371/journal.pone.0154600"]}
DOI: 10.5281/zenodo.46910
title: Enmu_La3324-6183

description: Clovis uniface from the Blackwater Draw National Historic Site.
DOI: 10.5281/zenodo.46911
title: Enmu_La3324-6185

description: Clovis blade from the Blackwater Draw National Historic Site.
DOI: 10.5281/zenodo.46914
title: Enmu_La3324-6186

description: Clovis blade from the Blackwater Draw National Historic Site.
DOI: 10.5281/zenodo.46915
title: Enmu_La3324-24121

description: Clovis uniface from the Blackwater Draw National Historic Site.
DOI: 10.5281/zenodo.46919
title: Enmu_La3324-24143 (Clovis Point)

description: Clovis point from the Blackwater Draw National Historic Site.
DOI: 10.5281/zenodo.46918
title: Enmu_La3324-24122 (Clovis Point)

description: Clovis point from the Blackwater Draw National Historic Site.
DOI: 10.5281/zenodo.46920
title: Enmu_La3324-24152 (Clovis Point)

description: Clovis point from the Blackwater Draw National Historic Site.
DOI: 10.15468/80tu83
title: Specimens of cyanoprocaryotes herbarium KPABG

description: Specimens cyanoprocaryota from KPABG(C)
DOI: 10.5061/dryad.22hn1/1
title: supplemental food web data

description: Data concerning each food web used in the meta-analysis.
DOI: 10.5061/dryad.22hn1/2
title: null models

description: R code for producing the null models: random, niche, and cascade
DOI: 10.5061/dryad.22hn1/3
title: hierarchy measure

description: R code for calculating GRCi and GRCo
DOI: 10.5281/zenodo.46819
title: Point Cloud (Dept. Of Engineering)

description: These are the registered and aligned point clouds from the Engineering Department acquired by the CIT lab. There are the second floor and part of the third floor of east wing of the Baker Building and the second floor of the central wing.
DOI: 10.18434/t4159s
title: NIST Mugshot Identification Database (MID)
title: NIST Special Database 18

description: This database was distributed for use in development and testing of automated mugshot identification systems.  The database consists of three CD-ROMs, containing a total of 3,248 images of variable size using lossless compression.  There are images of 1,573 individuals (cases) 1,495 male and 78 female.  The database contains both front and side (profile) views when available. Separating front views and profiles, there are 131 cases with two or more front views and 1,418 with only one front view.  Profiles have 89 cases with two or more profiles and 1,268 with only one profile. Cases with both fronts and profiles have 89 cases with two or more of both fronts and profiles, 27 with two or more fronts and one profile, and 1,217 with only one front and one profile.
DOI: 10.5281/zenodo.46846
title: Glottolog-Data: Glottolog Database 2.7

description: Hammarström, Harald & Forkel, Robert & Haspelmath, Martin & Bank, Sebastian. 2016. Glottolog 2.7. Jena: Max Planck Institute for the Science of Human History. (Available online at http://glottolog.org)
DOI: 10.5281/zenodo.46952
title: Replication Package Of The Paper Entitled "Summarizing App Reviews For Planning Future Change Tasks"

description: Description of the content of folder "SURF_replication_package":

1) "Experiment I" contains: a) the folder "summaries" which contains all the html summaries generated through SURF and browsed by study participants involved in the Experiment I. b) the folder "XMLreviews" which contains, for each app involved in the Experiment I, the corresponding reviews collected in the xml file. These xml files have been used as input files for the SURF tool for generating the summaries contained in the "summaries" folder c) "Experiment_I_results.xlsx" which contains all the answers to our survey collected from the Experiment I participants.

2) "Experiment II" contains: a) the folder "summaries" which contains the two html summaries generated through SURF and browsed by study participants in the Experiment II. b) the folder "XMLreviews" which contains, for each of the two app involved in the Experiment I, the reviews collected in the corresponding xml files. These xml files have been used as input of the SURF tool for generating the summaries contained in the "summaries" folder. c) "Experiment_II_results.xlsx" which contains all the user feedbacks extracted/validated by survey participants in the two sub-experiments. d) "Experiment_II_survey_answers.xlsx" which contains all the answers to our survey collected in the Experiment II participants.

3) "Survey.pdf" which contains the pdf version of the survey performed by the participants
DOI: 10.14469/hpc/288
title: A big file test

description: test
DOI: 10.14469/hpc/289
title: big file test 2

description: description
DOI: 10.14469/hpc/291
title: big zip 4

description: description
DOI: 10.17036/3d96d65d-5c12-42d3-ac48-63d91174b32a
title: Molecular dynamic simulations of the human calcitonin receptor extracellular domain with RAMP1

description: These files are the first 10 eigenvectors arising after principle component analysis. An homology model of the extracellular domain of the receptor in  complex with the extracellular domain of RAMP1 was generated and the minimised protein was placed centrally in a charge neutral cubic box (x=10nm) consisting of TIP3 water molecules, 150 mM NaCl and simulated for 1µs. The files consist of 99 snapshots. They may be viewed using VMD, available freely from the University of Illinois.
DOI: 10.4119/unibi/2901280
title: Sense of Coherence and associated factors among university students in China: cross-sectional evidence

description: Background Based on Salutogenic Model by Antonovsky (1979), Sense of Coherence (SOC) is a determinant of health; a strong SOC has positive health effects. The most important period in SOC development is before the age of 30. University students belong to this age group. The multiple demands at the university, such as managing academic tasks, deepening relationships with others, and planning a career, have been considered as normative sources of stress that could challenge the SOC of the students. This research intended to identify the factors associated with SOC among the university students in China with emphasis on the impact of the perceived stress on the development of SOC. The specific objectives were to: 1) investigate the association between SOC, socio-demographic and lifestyle-related characteristics; 2) assess the effect of perceived stress on SOC controlling for other variables. Both analyses were done to derive a better view on possible strategies to strengthen students’ SOC and with that to promote their health at Chinese universities. Methods The data used were from a Chinese university student health survey (N = 1,853). Logistic regression analyses were used to explore the effects of varied socio-demographic, lifestyle-related variables on students’ level of Sense of Coherence (SOC), as well as the association between perceived stress and SOC controlling for other variables in the analysis. Results Both social support (OR = 2.56 [1.87-3.50]) and better performance compared with peers (OR = 1.64 [1.15-2.34]) were associated with a stronger SOC. Not feeling isolated at university (OR = 1.60 [1.04-2.47]) and satisfaction with the political situation (OR = 2.05 [1.57-2.67]) were also associated with a stronger SOC. This counts also for high health awareness (OR = 1.40 [1.05-1.87]) and nutrition importance (OR = 1.67 [1.04-2.69]). Perceived stress (OR = 0.81 [0.79-0.83]) was negatively associated with a strong SOC when controlling for socio-demographic and lifestyle-related variables. Conclusion We suggest integrating stress coping, emotion management training programmes as well as measures promoting social integration for students and teachers at campus, promoting healthy behaviours, and creating a supportive learning environment as strategies for enhancing the SOC level of university students in China.
DOI: 10.4119/unibi/2698649
title: Supplementary Material for "Interactive Sonification of Grid-based Games"

description: This paper presents novel designs for the sonification (auditory representation) of data from grid-based games such as Connect Four, Sudoku and others, motivated by the search for effective auditory representations that are useful for visually-impaired users as well as to support overviews in case that the visual sense is already otherwise allocated. Grid-based games are ideal to develop sonification strategies since they offer the advantage of providing an excellent test environment to evaluate the designs by measuring details of the interaction, learning, performance of the users, etc. We present in detail two new playable sonification-based audio games, and finally discuss how the approaches might generalise to general grid-based interactive exploration, e.g. for spreadsheet data.
DOI: 10.6084/m9.figshare.3083947.v1
title: Pengenalan Rangkakerja Metodologi dalam Kajian Penyelidikan: Satu Kajian Kes
DOI: 10.15468/bt4cxj
title: Registros de plantas obtenidos en el monitoreo de una de las plataformas instaladas por CORNARE en Antioquia

description: Se realizo el monitoreo a los procesos de restauración ecológica hechos por CORNARE con el fin de registrar los componentes susceptibles a cambiar en el tiempo. El área de estudio corresponde a 5 municipios ubicados en el municipio de Antioquia así: Abejorral, La Unión, La Ceja, San Luis y San Carlos donde se obtuvieron 363 registros.
DOI: 10.14469/hpc/290
title: a third big data set

description: description