cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19188965
title: Rhizospheric soil metabarcoding analysis of <i>Alnus nepalensis</i> from Darjeeling hills reveals the abundance of nitrogen-fixing symbiotic microbes

description: Actinorhizal plants are employed as successional plants for ecological restoration mainly due to their nitrogen-fixing ability. <i>Alnus nepalensis</i> or Nepali alder of Darjeeling hills is one of the potential plants used for agroforestry and known for its symbiotic association with an actinobacterium, <i>Frankia</i>. In this study, we performed a comparative16S rRNA amplicon analysis among six soil samples of <i>Alnus</i> rhizosphere and Non-rhizosphere of different altitudes of Darjeeling hills. Bioinformatics analyses were performed through the MG-RAST web server. Results revealed a set of 32 core bacterial genera among both rhizosphere and non-rhizosphere. Interestingly, <i>Alnus</i> rhizospheric soil samples were more populated with nitrogen-fixing taxa than non-rhizospheric or bulk soil. Nitrogen-fixing bacteria like <i>Frankia</i> and <i>Cyanobacteria</i> may play an important synergistic role in the proper growth and developmental stages of these plants. They are crucial for increasing the nitrogen amount of the soil through nitrogen fixation and gradually help in increasing the soil fertility and thus help in the proper progression of <i>Alnus</i> through the seral stages of succession. Nonrhizospheric soil samples were having a distinct population of other soil bacteria like <i>Streptomyces, Rubrobacter, and Xanthomonas</i> with higher Alpha diversity (54.14) than <i>Alnus</i> rhizospheric soil (42.18). This result was also validated by the rare fraction curve, which indicated more biodiversity in Non-rhizospheric soil rather than <i>Alnus</i> rhizosphere.
DOI: 10.6084/m9.figshare.19188965.v2
title: Rhizospheric soil metabarcoding analysis of <i>Alnus nepalensis</i> from Darjeeling hills reveals the abundance of nitrogen-fixing symbiotic microbes

description: Actinorhizal plants are employed as successional plants for ecological restoration mainly due to their nitrogen-fixing ability. <i>Alnus nepalensis</i> or Nepali alder of Darjeeling hills is one of the potential plants used for agroforestry and known for its symbiotic association with an actinobacterium, <i>Frankia</i>. In this study, we performed a comparative16S rRNA amplicon analysis among six soil samples of <i>Alnus</i> rhizosphere and Non-rhizosphere of different altitudes of Darjeeling hills. Bioinformatics analyses were performed through the MG-RAST web server. Results revealed a set of 32 core bacterial genera among both rhizosphere and non-rhizosphere. Interestingly, <i>Alnus</i> rhizospheric soil samples were more populated with nitrogen-fixing taxa than non-rhizospheric or bulk soil. Nitrogen-fixing bacteria like <i>Frankia</i> and <i>Cyanobacteria</i> may play an important synergistic role in the proper growth and developmental stages of these plants. They are crucial for increasing the nitrogen amount of the soil through nitrogen fixation and gradually help in increasing the soil fertility and thus help in the proper progression of <i>Alnus</i> through the seral stages of succession. Nonrhizospheric soil samples were having a distinct population of other soil bacteria like <i>Streptomyces, Rubrobacter, and Xanthomonas</i> with higher Alpha diversity (54.14) than <i>Alnus</i> rhizospheric soil (42.18). This result was also validated by the rare fraction curve, which indicated more biodiversity in Non-rhizospheric soil rather than <i>Alnus</i> rhizosphere.
DOI: 10.6084/m9.figshare.17694573
title: Characterization of <i>Larix kaempferi</i> seeds selected by near-infrared spectroscopy for germination and post-germination growth in nursery containers

description: Demand for nursery stock of Japanese larch (<i>Larix kaempferi</i>) is growing. Containerized seedlings are expected to meet this demand. However, the conventional methods are labor intensive and time consuming because one-year-old bare-root seedlings are transplanted to containers. In this study, we selected seeds using a spectroscope and examined two propagation methods, direct sowing on nursery container (direct sowing) and sowing on a small plug tray followed by transplantation to a container (plug transplant), to shorten the nursery period of 2 years. Germination rate increased in the selected seed when compared with the unselected seed (χ<sup>2</sup> test). The days to germinate (DtG) shortened with the use of heavier seeds, and the one-year-old seedlings grew taller as the DtG decreased. However, transplantation from plug trays had negative effects (generalized linear model (GLM) and analysis of variance (ANOVA). On the other hand, large volume cell had positive effects on root collar diameter (GLM and ANOVA). The results revealed that the nursery periods were shortened by using large volume cell, irrespective of the seedling type (direct sowing or plug transplant).
DOI: 10.6084/m9.figshare.17694573.v1
title: Characterization of <i>Larix kaempferi</i> seeds selected by near-infrared spectroscopy for germination and post-germination growth in nursery containers

description: Demand for nursery stock of Japanese larch (<i>Larix kaempferi</i>) is growing. Containerized seedlings are expected to meet this demand. However, the conventional methods are labor intensive and time consuming because one-year-old bare-root seedlings are transplanted to containers. In this study, we selected seeds using a spectroscope and examined two propagation methods, direct sowing on nursery container (direct sowing) and sowing on a small plug tray followed by transplantation to a container (plug transplant), to shorten the nursery period of 2 years. Germination rate increased in the selected seed when compared with the unselected seed (χ<sup>2</sup> test). The days to germinate (DtG) shortened with the use of heavier seeds, and the one-year-old seedlings grew taller as the DtG decreased. However, transplantation from plug trays had negative effects (generalized linear model (GLM) and analysis of variance (ANOVA). On the other hand, large volume cell had positive effects on root collar diameter (GLM and ANOVA). The results revealed that the nursery periods were shortened by using large volume cell, irrespective of the seedling type (direct sowing or plug transplant).
DOI: 10.6084/m9.figshare.19076213.v1
title: Niche adaptation of Frankia do not drastically influence their metabolic profiling

description: Metabolic-profiling (metabolomics/metabonomics) is a measurement strategy among biological systems for low-molecular-weight metabolites and their corresponding intermediates acting as dynamic physiological, pathophysiological and developmental stimuli. Information regarding the metabolomics of <i>Frankia</i> is elusive. In this study, we analyzed 48 <i>Frankia</i> whole-genome sequences. Kyoto Encyclopedia of Genes and Genomes (KEGG) database and KEGG Automatic Annotation Server (KAAS) were used for the prediction and functional annotation of genes associated with diverse metabolic pathways. Comprehensive codon and amino-acid usage analyses along with tRNA adaptation index and dN/dS-based evolutionary inquest were performed. We have used the Database-of-Essential-Genes (DEG) server to predict the essentiality of the metabolic pathway-related-genes. We found a strong effect of compositional constraints on the metabolic pathway genes of Frankia. The evolutionary analysis revealed the conserved nature of the studied genes. Since the metabolic pathway-related genes were found to be housekeeping genes, they are conserved and less evolved. This was further validated with a dN/dS value of less than 1. Moreover, the number of synonymous changes was more than non-synonymous changes so that the amino acid sequence remains identical. The cluster of orthologs (COG) analysis revealed “metabolism” as the main functional category of the studied gene set. The core metabolic pathway-related genes among considered <i>Frankia</i> strains accumulated 115 genes. This study for the first time reveals the genomic characteristics of the metabolic pathway-related genes among <i>Frankia</i>. From all the analysis, we could hypothesize that in spite of their host specificity and differential taxonomical distribution, <i>Frankia</i> maintain a core metabolic proficiency among them.
DOI: 10.6084/m9.figshare.19188965.v1
title: Rhizospheric soil metabarcoding analysis of <i>Alnus nepalensis</i> from Darjeeling hills reveals the abundance of nitrogen-fixing symbiotic microbes

description: Actinorhizal plants are employed as successional plants for ecological restoration mainly due to their nitrogen-fixing ability. <i>Alnus nepalensis</i> or Nepali alder of Darjeeling hills is one of the potential plants used for agroforestry and known for its symbiotic association with an actinobacterium, <i>Frankia</i>. In this study, we performed a comparative16S rRNA amplicon analysis among six soil samples of <i>Alnus</i> rhizosphere and Non-rhizosphere of different altitudes of Darjeeling hills. Bioinformatics analyses were performed through the MG-RAST web server. Results revealed a set of 32 core bacterial genera among both rhizosphere and non-rhizosphere. Interestingly, <i>Alnus</i> rhizospheric soil samples were more populated with nitrogen-fixing taxa than non-rhizospheric or bulk soil. Nitrogen-fixing bacteria like <i>Frankia</i> and <i>Cyanobacteria</i> may play an important synergistic role in the proper growth and developmental stages of these plants. They are crucial for increasing the nitrogen amount of the soil through nitrogen fixation and gradually help in increasing the soil fertility and thus help in the proper progression of <i>Alnus</i> through the seral stages of succession. Nonrhizospheric soil samples were having a distinct population of other soil bacteria like <i>Streptomyces, Rubrobacter, and Xanthomonas</i> with higher Alpha diversity (54.14) than <i>Alnus</i> rhizospheric soil (42.18). This result was also validated by the rare fraction curve, which indicated more biodiversity in Non-rhizospheric soil rather than <i>Alnus</i> rhizosphere.
DOI: 10.5517/ccdc.csd.cc1kwm68
title: CCDC 1456510: Experimental Crystal Structure Determination

description: Related Article: Zeng Ping, Feng He Shan|2019|U.S.Patents|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20k00m
title: CCDC 1863379: Experimental Crystal Structure Determination

description: Related Article: Weiyao Li, Jiangnan Li, Thien D. Duong, Sergei A. Sapchenko, Xue Han, Jack D. Humby, George F. S. Whitehead, Iñigo J. Victórica-Yrezábal, Ivan da Silva, Pascal Manuel, Mark D. Frogley, Gianfelice Cinque, Martin Schröder, Sihai Yang|2022|J.Am.Chem.Soc.|144|13196|doi:10.1021/jacs.2c03280
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26fjck
title: CCDC 2038788: Experimental Crystal Structure Determination

description: Related Article: Fei-ze Li, Jun-shan Geng, Kong-qiu Hu, Li-wen Zeng, Jing-yang Wang, Xiang-he Kong, Ning Liu, Zhi-fang Chai, Lei Mei, Wei-qun Shi|2021|Chem.-Eur.J.|27|8730|doi:10.1002/chem.202100614
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26fjdl
title: CCDC 2038789: Experimental Crystal Structure Determination

description: Related Article: Fei-ze Li, Jun-shan Geng, Kong-qiu Hu, Li-wen Zeng, Jing-yang Wang, Xiang-he Kong, Ning Liu, Zhi-fang Chai, Lei Mei, Wei-qun Shi|2021|Chem.-Eur.J.|27|8730|doi:10.1002/chem.202100614
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26fjfm
title: CCDC 2038790: Experimental Crystal Structure Determination

description: Related Article: Fei-ze Li, Jun-shan Geng, Kong-qiu Hu, Li-wen Zeng, Jing-yang Wang, Xiang-he Kong, Ning Liu, Zhi-fang Chai, Lei Mei, Wei-qun Shi|2021|Chem.-Eur.J.|27|8730|doi:10.1002/chem.202100614
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28m2ll
title: CCDC 2103709: Experimental Crystal Structure Determination

description: Related Article: Xiuli You, Wenjun Rao, Keke Han, Lingyu Wang, Mengxia Zhang, Zhenhong Wei|2022|New J.Chem.|46|14404|doi:10.1039/D2NJ02531K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29fk0b
title: CCDC 2128181: Experimental Crystal Structure Determination

description: Related Article: Xiuli You, Wenjun Rao, Keke Han, Lingyu Wang, Mengxia Zhang, Zhenhong Wei|2022|New J.Chem.|46|14404|doi:10.1039/D2NJ02531K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b5t5j
title: CCDC 2150537: Experimental Crystal Structure Determination

description: Related Article: Ji Zhang, Niels R. M. Reintjens, Jayaraman Dhineshkumar, Martin D. Witte, Adriaan J. Minnaard|2022|Org.Lett.|24|5339|doi:10.1021/acs.orglett.2c01992
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2blqqd
title: CCDC 2162954: Experimental Crystal Structure Determination

description: Related Article: Bin Zhang|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2blqrf
title: CCDC 2162955: Experimental Crystal Structure Determination

description: Related Article: Bin Zhang|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2blqsg
title: CCDC 2162956: Experimental Crystal Structure Determination

description: Related Article: Bin Zhang|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bmhs8
title: CCDC 2163700: Experimental Crystal Structure Determination

description: Related Article: Bin Zhang|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bmht9
title: CCDC 2163701: Experimental Crystal Structure Determination

description: Related Article: Bin Zhang|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bmhvb
title: CCDC 2163702: Experimental Crystal Structure Determination

description: Related Article: Bin Zhang|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29ygg6
title: CCDC 2143478: Experimental Crystal Structure Determination

description: Related Article: Serigne Abdou Khadir Fall, Sara Hajib, Younas Aouine, Rachid Ouarsal, Anouar Alami, Mohamed El Omari, Abderrazzak Assani, Mohamed Saadi, Lahcen El Ammari|2022|Molbank|2022|M1360|doi:10.3390/M1360
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29xlqk
title: CCDC 2142649: Experimental Crystal Structure Determination

description: Related Article: Shan-Qing Yang, Lei Zhou, Yabing He, Rajamani Krishna, Qiang Zhang, Yi-Feng An, Bo Xing, Ying-Hui Zhang, Tong-Liang Hu|2022|ACS Applied Materials and Interfaces|14|33429|doi:10.1021/acsami.2c09917
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc296xfw
title: CCDC 2121808: Experimental Crystal Structure Determination

description: Related Article: Hong Gao, Yi-Dan Chen, Tie Zhang, Jia-Zhen Ge, Da-Wei Fu, Yi Zhang|2022|Inorg.Chem.|61|10872|doi:10.1021/acs.inorgchem.2c01295
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc296xgx
title: CCDC 2121809: Experimental Crystal Structure Determination

description: Related Article: Hong Gao, Yi-Dan Chen, Tie Zhang, Jia-Zhen Ge, Da-Wei Fu, Yi Zhang|2022|Inorg.Chem.|61|10872|doi:10.1021/acs.inorgchem.2c01295
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bq8s4
title: CCDC 2166366: Experimental Crystal Structure Determination

description: Related Article: Rubén Turo-Cortés, Manuel Meneses-Sánchez, Teresa Delgado, Carlos Bartual-Murgui, M. Carmen Muñoz, José Antonio Real|2022|J.Mater.Chem.C|10|10686|doi:10.1039/D2TC02039D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bq8t5
title: CCDC 2166367: Experimental Crystal Structure Determination

description: Related Article: Rubén Turo-Cortés, Manuel Meneses-Sánchez, Teresa Delgado, Carlos Bartual-Murgui, M. Carmen Muñoz, José Antonio Real|2022|J.Mater.Chem.C|10|10686|doi:10.1039/D2TC02039D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bq91f
title: CCDC 2166374: Experimental Crystal Structure Determination

description: Related Article: Rubén Turo-Cortés, Manuel Meneses-Sánchez, Teresa Delgado, Carlos Bartual-Murgui, M. Carmen Muñoz, José Antonio Real|2022|J.Mater.Chem.C|10|10686|doi:10.1039/D2TC02039D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bq95k
title: CCDC 2166378: Experimental Crystal Structure Determination

description: Related Article: Rubén Turo-Cortés, Manuel Meneses-Sánchez, Teresa Delgado, Carlos Bartual-Murgui, M. Carmen Muñoz, José Antonio Real|2022|J.Mater.Chem.C|10|10686|doi:10.1039/D2TC02039D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.