cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9amszy
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is one of (Aparavirus Taura Syndrome virus, Batrachochytrium dendrobatidis, Chlamydophila psittaci, Cronartium ribicola, Flavivirus, Lyngbya majuscula, Mastrevirus Switchgrass mosaic-associated virus, Okavirus Gill-associated virus, Ophiostoma ulmi, Vibrio cholerae, Vibrio parahaemolyticus)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "Country is one of (Mexico)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 1000",
 "ScientificName is not null",
 "DecimalLongitude is not null",
 "DecimalLatitude is not null"
 ]
}

 The dataset includes 158 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016286-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ratvct
title: Occurrence Download

description: A dataset containing 190 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Prosopis L."
 ]
}

 The dataset includes 190 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0182574-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5b9ed9
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (CHN.15_1, CHN.31_1, CHN.1_1, CHN.24_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rubus glabricarpus var. glabratus C.Z.Zheng & Y.Y.Fang"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018208-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zexuyo
title: Occurrence Download

description: A dataset containing 3052 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ludwigia peruviana (L.) H.Hara"
 ]
}

 The dataset includes 3052 records from 129 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066896-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fyx2vw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melissodes robustior Cockerell, 1915",
 "Geometry POLYGON((-124.189453 41.967659,-120.102539 41.967659,-119.970703 38.891032,-114.125976 34.307143,-114.829101 32.842673,-117.114257 32.583849,-118.740234 34.052659,-120.541992 34.633207,-124.365234 40.513799,-124.189453 41.967659))",
 "HasCoordinate is true",
 "BasisOfRecord is Specimen",
 "Year is 2010"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013762-151016162008034/datasets/export for details.
DOI: 10.15468/dl.wduibu
title: Occurrence Download

description: A dataset containing 2296 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cercis L.",
 "Geometry POLYGON((-128.671875 42.553080,-101.25 0.703107,48.515625 17.308687,146.953124 4.214943,144.140625 53.330872,21.796875 56.170022,-120.234375 52.482780,-128.671875 42.553080))",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 2296 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066900-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.88j43j
title: Occurrence Download

description: A dataset containing 4705 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Triplochiton scleroxylon K.Schum."
 ]
}

 The dataset includes 4705 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018196-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zxlkoq
title: Occurrence Download

description: A dataset containing 4322 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Siren intermedia Barnes, 1826"
 ]
}

 The dataset includes 4322 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013768-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nstw0n
title: Occurrence Download

description: A dataset containing 1285 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calocedrus Kurz",
 "Geometry POLYGON((55.546874 52.052490,77.343749 -4.915832,101.953125 7.710991,184.921874 14.604847,303.75 6.315298,295.3125 33.137551,312.1875 52.908902,296.71875 60.586967,117.421875 61.938950,55.546874 52.052490))",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 1285 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066903-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j9vzrk
title: Occurrence Download

description: A dataset containing 264 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Piper inaequale C.DC."
 ]
}

 The dataset includes 264 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065408-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.shlsij
title: Occurrence Download

description: A dataset containing 5459 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Living Specimen"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Anadara Gray, 1847",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5459 records from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013769-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8alcvt
title: Occurrence Download

description: A dataset containing 33048 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bauhinia Plum. ex L.",
 "Geometry POLYGON((-14.0625 36.597889,-23.203125 17.308687,-14.765625 3.513421,3.515625 -2.108898,14.765625 -41.508577,37.265625 -38.272688,161.718749 -23.885837,302.34375 -45.583289,331.875 -10.487811,306.5625 15.961329,291.09375 27.683528,222.187499 48.458351,132.890625 44.590467,-14.0625 36.597889))",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 33048 records from 287 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066904-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ftrfkv
title: Occurrence Download

description: A dataset containing 1470 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The hoverfly collection (Diptera, Syrphidae) of the International Centre of Insect Physiology and Ecology (icipe) at Nairobi (Kenya)"
 ]
}

 The dataset includes 1470 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013769-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.6gmbkqu4
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (45 records)
DOI: 10.15468/dl.q4dr3j
title: Occurrence Download

description: A dataset containing 697 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Adenocline Turcz."
 ]
}

 The dataset includes 697 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019017-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12704419
title: Volume Pekerjaan
DOI: 10.5281/zenodo.12704420
title: Volume Pekerjaan
DOI: 10.5281/zenodo.4957886
title: Hotspots of endemism and rarity - Figure 2.2.3 IPBES Global Assessment - underlying data layer

description: This figure appeared in the IPBES Global Assessment Chapter 2 Nature (https://doi.org/10.5281/zenodo.3832005)


 


Harmonized centres of rarity, representing 7.3% of the land surface and 5% of the marine surface
We used regional estimates of area-standardized spatial rarity vascular plants, terrestrial vertebrates, freshwater fishes and select marine taxa (ca. 370,000 species) to develop a harmonized set of their global centres of endemism richness. For each group we identified the top 5% regions by area, on land accounted for human encroachment (cropland and urban areas). The combined terrestrial top areas account for 7.3% of terrestrial, non-encroached 1km pixels, the marine top areas for 5% of the marine area. The developed priority map is limited by the large and varying size of geographical units which cause errors of omission and commission at spatial finer scales. We aimed to ameliorate this issue by excluding human-encroached, unsuitable areas at high resolution. The map benefits from representing a broad range of taxa and species, and to our knowledge it is the currently best possible attempt of representing the geographical rarity of this diversity at global extent.
DOI: 10.5281/zenodo.4957887
title: Hotspots of endemism and rarity - Figure 2.2.3 IPBES Global Assessment - underlying data layer

description: This figure appeared in the IPBES Global Assessment Chapter 2 Nature (https://doi.org/10.5281/zenodo.3832005)


 


Harmonized centres of rarity, representing 7.3% of the land surface and 5% of the marine surface
We used regional estimates of area-standardized spatial rarity vascular plants, terrestrial vertebrates, freshwater fishes and select marine taxa (ca. 370,000 species) to develop a harmonized set of their global centres of endemism richness. For each group we identified the top 5% regions by area, on land accounted for human encroachment (cropland and urban areas). The combined terrestrial top areas account for 7.3% of terrestrial, non-encroached 1km pixels, the marine top areas for 5% of the marine area. The developed priority map is limited by the large and varying size of geographical units which cause errors of omission and commission at spatial finer scales. We aimed to ameliorate this issue by excluding human-encroached, unsuitable areas at high resolution. The map benefits from representing a broad range of taxa and species, and to our knowledge it is the currently best possible attempt of representing the geographical rarity of this diversity at global extent.
DOI: 10.15468/dl.hje76h
title: Occurrence Download

description: A dataset containing 644 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Eragrostis minor Host"
 ]
}

 The dataset includes 644 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019018-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h8ytab
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solidago fallax var. fallax"
 ]
}

 The dataset includes 94 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019019-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12686961
title: Appendices - PhD thesis by Guy Sinaiko

description: This DB contains all of Guy Sinaiko's PhD thesis dissertation (Tel Aviv University) that could not be attached to the PDF file containing the thesis itself.

Thesis headline:

Phylogeny, vibrational signals and classification of Neoaliturus Distant, 1918 with special emphasis on theinvasive N. tenellus (Baker, 1896) species complex: an integrative taxonomic approach
DOI: 10.18712/nsd-nsd2375-v3
title: Non-Violence? Political Protest Strategies and Political Outcomes, 2012

description: This project examines the conditions that foster the use of non-violent as opposed to violent tactics, focusing on the interaction between specific characteristics of different organizations, their constituencies, the state, and external actors. It examines why organizations seeking political change choose specific tactics; when non-violent actors can be an effective force for political dissent; how decisions to use violence or non-violent means affect the strategic interaction between the state and opposition groups; whether non-violent movements tend to involve specific types of actors and interests compared to violent organizations, as well as how states and international actors can prevent conflicts from escalating to violence.
DOI: 10.15468/dl.dcqfp8
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Cuba",
 "OccurrenceStatus is Present",
 "TaxonKey is Anolis juangundlachi Garrido, 1975"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019021-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ukg9h3
title: Occurrence Download

description: A dataset containing 7610677 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "GadmGid is one of (USA.5.44_1, USA.5.41_1)"
 ]
}

 The dataset includes 7610677 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019015-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12701420
title: Data and software for "Correcting Turbulence-induced Errors in Fiber Positioning for the Dark Energy Spectroscopic Instrument"

description: Supplementary material to the DESI publication "Correcting Turbulence-induced Errors in Fiber Positioning for the Dark Energy Spectroscopic Instrument".

The main "turbfigures.py" script generates the figures in the paper from the included data files.

Contents:

Software files



turbfigures.py: Turbulence plotting and analysis plotting routines.

turbulence.py: Analysis routines called by turbfigures.py.  The live version of this code in production for desi is in the desimeter package (https://github.com/desihub/desimeter/blob/main/py/desimeter/turbulence.py)


Data files



coord-summary-20240124-pm.fits



Measured centroids of fibers in for 400 consecutive images of the focal plane while at zenith.  File contains the following columns:



expid - exposure ID

location - "location" of fiber in focal plane; ranges from 0 - 10000.  Fibers on petal 0 have numbers between 0 and 1000, etc.  There are only 500 positioners per petal, so most locations are not populated.

move - in real data, this indexes over the moves in a DESI positioning loop; garbage information here.

fpa_{x,y} - measured position of the fiber in this exposure

req_{x,y} - requested position of the fiber in this exposure; not used for this data set where positioners are fixed in location

{x,y}turb - empty in this file; gets filled in by turbfigures.py with measured turbulence

flags_cor - flags indicating that a positioner or fiber may be problematic

postype - flags indicating that a location corresponds to a real positioner vs. a fiducial

expected_{x,y} - empty in this file; gets filled in by turbfigures.py with "expected" positions of each fiber, so that fpa_{x,y} - expected_{x,y} is a noisy estimate of the turbulence seen by the fiber.



Note that this file has an awkward structure.  It has 10000 rows, one for each possible location.  Most fields are then 400 element arrays that gives the corresponding values, corresponding to the 400 exposures present in the file.



coordinates-stats.ecsv



statistics of positioning accuracy and turbulence amplitude in DESI positioning loops.  Measured RMSes are the 5-sigma clipped root-mean-square positioning offset in 2D: sqrt(mean(dx^2 + dy^2)).  Measured medians are median(sqrt(dx^2 + dy^2)).

Contents:



coord_filename - file name of DESI coordinates file statistics were drawn from

rms_turbulence - RMS for the turbulent contribution to the positioning error

rms_positioning - RMS for positioning after removing turbulence

rms_total - Total RMS

med_turbulence - median turbulence in exposure

med_positioning - median positioning error in exposure

med_total - median total turbulence + positioning error in exposure

expid - exposure id number






Dependencies: The included software uses the DESI software stack and otherwise the usual python astronomy packages: numpy scipy matplotlib astropy.  Alternatively, people with access to NERSC can load the default DESI environment and pull in all needed dependencies.
DOI: 10.5281/zenodo.12701421
title: Data and software for "Correcting Turbulence-induced Errors in Fiber Positioning for the Dark Energy Spectroscopic Instrument"

description: Supplementary material to the DESI publication "Correcting Turbulence-induced Errors in Fiber Positioning for the Dark Energy Spectroscopic Instrument".

The main "turbfigures.py" script generates the figures in the paper from the included data files.

Contents:

Software files



turbfigures.py: Turbulence plotting and analysis plotting routines.

turbulence.py: Analysis routines called by turbfigures.py.  The live version of this code in production for desi is in the desimeter package (https://github.com/desihub/desimeter/blob/main/py/desimeter/turbulence.py)


Data files



coord-summary-20240124-pm.fits



Measured centroids of fibers in for 400 consecutive images of the focal plane while at zenith.  File contains the following columns:



expid - exposure ID

location - "location" of fiber in focal plane; ranges from 0 - 10000.  Fibers on petal 0 have numbers between 0 and 1000, etc.  There are only 500 positioners per petal, so most locations are not populated.

move - in real data, this indexes over the moves in a DESI positioning loop; garbage information here.

fpa_{x,y} - measured position of the fiber in this exposure

req_{x,y} - requested position of the fiber in this exposure; not used for this data set where positioners are fixed in location

{x,y}turb - empty in this file; gets filled in by turbfigures.py with measured turbulence

flags_cor - flags indicating that a positioner or fiber may be problematic

postype - flags indicating that a location corresponds to a real positioner vs. a fiducial

expected_{x,y} - empty in this file; gets filled in by turbfigures.py with "expected" positions of each fiber, so that fpa_{x,y} - expected_{x,y} is a noisy estimate of the turbulence seen by the fiber.



Note that this file has an awkward structure.  It has 10000 rows, one for each possible location.  Most fields are then 400 element arrays that gives the corresponding values, corresponding to the 400 exposures present in the file.



coordinates-stats.ecsv



statistics of positioning accuracy and turbulence amplitude in DESI positioning loops.  Measured RMSes are the 5-sigma clipped root-mean-square positioning offset in 2D: sqrt(mean(dx^2 + dy^2)).  Measured medians are median(sqrt(dx^2 + dy^2)).

Contents:



coord_filename - file name of DESI coordinates file statistics were drawn from

rms_turbulence - RMS for the turbulent contribution to the positioning error

rms_positioning - RMS for positioning after removing turbulence

rms_total - Total RMS

med_turbulence - median turbulence in exposure

med_positioning - median positioning error in exposure

med_total - median total turbulence + positioning error in exposure

expid - exposure id number






Dependencies: The included software uses the DESI software stack and otherwise the usual python astronomy packages: numpy scipy matplotlib astropy.  Alternatively, people with access to NERSC can load the default DESI environment and pull in all needed dependencies.
DOI: 10.5281/zenodo.12704124
title: BioFINE Ozone_Treatment_and_Silanization

description: FTIR Abs spectra of different ozone treated samples. Spectra of silanization follow.
DOI: 10.5281/zenodo.12704125
title: BioFINE Ozone_Treatment_and_Silanization

description: FTIR Abs spectra of different ozone treated samples. Spectra of silanization follow.
DOI: 10.6084/m9.figshare.26233313
title: The Role Ki-67 and p16 Expression in Predicting 3-year Progression-Free Survival of Locally Advanced Nasopharyngeal Cancer: Single Centre Observational Study

description: This dataset related to study
DOI: 10.6084/m9.figshare.26233313.v2
title: The Role Ki-67 and p16 Expression in Predicting 3-year Progression-Free Survival of Locally Advanced Nasopharyngeal Cancer: Single Centre Observational Study

description: This dataset related to study
DOI: 10.6084/m9.figshare.26233313.v1
title: The Role Ki-67 and p16 Expression in Predicting 3-year Progression-Free Survival of Locally Advanced Nasopharyngeal Cancer: Single Centre Observational Study

description: This dataset related to study
DOI: 10.15468/dl.vynrah
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Cuba",
 "OccurrenceStatus is Present",
 "TaxonKey is Anolis isolepis (Cope, 1861)"
 ]
}

 The dataset includes 44 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019022-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nfxqg8
title: Occurrence Download

description: A dataset containing 1714213 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Pl@ntNet observations"
 ]
}

 The dataset includes 1714213 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019020-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.