cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/582v9zkbdz.1
title: Temporal trade-off between territorial and thermoregulatory behaviors of a generalist lizard in a dry forest

description: Avoiding dangerously hot body temperatures is important for survival, but animals may perform reproductive behaviors at the expense of behaviors used to cool down (or vice-versa), resulting in a thermoregulation-reproduction trade-off. Although this trade-off has been demonstrated in semi-aquatic animals, it has not been studied in terrestrial ectotherms. This is an important research gap given the importance of survival-reproduction trade-offs in evolutionary ecology and the pace of habitat warming due to vegetation loss and global climate change. We explored this trade-off in territorial males of the lizard Sceloporus ochoterenae, which breeds during the hot-dry season in seasonally dry tropical forest. We first confirmed the existence of a temporal trade-off between performing push-ups (a territorial behavioral display) versus sheltering in the shade (thermoregulatory behavior), then used confirmatory path analysis to explore how it is affected by vegetation cover, microclimate temperature, and the presence of a conspecific intruder. We found that territories with less vegetation cover had higher microclimate temperatures, where focal males spent more time performing push-ups at the expense of sheltering in the shade. Focal males also spent more time performing push-ups the longer an intruder was present, who was also affected by the environmental variables. Territorial males spent more time in sunny spots when performing push-ups despite the potential for overheating, perhaps because the display is more effective when performed in the open. The potential effects of continued habitat warming on this trade-off vary widely, including intensifying it, driving lizards to change their daily activity rhythms, and chronic overheating.
DOI: 10.17632/582v9zkbdz.2
title: Temporal trade-off between territorial and thermoregulatory behaviors of a generalist lizard in a dry forest

description: Seasonally dry tropical forest lizards tend to decrease their diurnal activity during the dry season as microclimates become hot and dry, but food availability decreases. The lizards then take refuge in the shade of leaf litter. However, some lizard species remain active in sunny spots defending their territory against intruders and courting females. This poses a trade-off between self-maintenance and reproduction that has been explored in semi-aquatic animals, but not in terrestrial ones. We evaluated the dynamics of this trade-off as a function of % tree cover, microclimatic temperature and the presence of conspecific intruders in the territory during the dry season. We found that the lizards evaluated prioritized the defense of their territory by flexing from sunny sites over thermoregulatory behaviors by sheltering in shady spots. The lizards spent more time performing territorial behaviors than thermoregulatory behaviors in more uncovered and thus warmer territories, as well as in the presence of intruders. We argue that the prioritization of territorial over thermoregulatory behaviors during the dry season poses sublethal effects, which could be exacerbated by projected habitat warming.
DOI: 10.17632/v82vdkt7ws.1
title: Cardiomyocyte transcriptome remodeling in response to Trypanosoma cruzi infection

description: Genes with signals below the threshold of 43, 48, 43, 52 at 24 and 48 hours on the T cruzi-infected (CCM model) and control conditions, respectively, were excluded leaving 11,041 and 11,000 valid gene probes for analysis.
DOI: 10.17632/v82vdkt7ws.2
title: Cardiomyocyte transcriptome remodeling in response to Trypanosoma cruzi infection

description: HL-1 rodent cardiomyocytes were infected with T. cruzi trypomastigotes of the Colombian, Y or Tulahuen strain. RNA was serially isolated post-infection for microarray analysis. Genes with signals above the threshold of 43, 48, 43, 52 at 24 and 48 hours on the T cruzi-infected (CCM model) and control conditions, respectively, were excluded leaving 11,041 and 11,000 valid gene probes for analysis. "24h_48h_ValidGenes_q_Values.xlsx" file was added containing the P-values adjusted by multiple comparisons (q-values).
DOI: 10.17632/j52xddrrms
title: Data for: Fine-scale interventions can reinforce the forest character of the understory vegetation – The effects of different artificial gaps in an oak-dominated forest

description: Data of understory survey in the frame of Pilis Gap Experiment. The study was carried out in an oak-hornbeam forest in Hungary, in 2018-2023. Data were collected in every year, in four, artificially created gap types (large circular, large elongated, small circular, small elongated gaps) and in uncut control sites, in six replicates. List of understory species was established and percentage cover of each species was estimated in 2 m x 2 m quadrats. The cover of shrub layer and the height of the understory vegetation was also estimated. Species richness, sum of the species cover and cover of 5 functional groups (annual forbs, perennial forbs, graminoids, woody regeneration and cover of Rubus fruticosus agg. as an individual species group) were calculated. Relative direct and diffuse light were estimated by hemispherical photographs, and volumetric soil water content was also measured.
DOI: 10.17632/j52xddrrms.1
title: Data for: Fine-scale interventions can reinforce the forest character of the understory vegetation – The effects of different artificial gaps in an oak-dominated forest

description: Data of understory survey in the frame of Pilis Gap Experiment. The study was carried out in an oak-hornbeam forest in Hungary, in 2018-2023. Data were collected in every year, in four, artificially created gap types (large circular, large elongated, small circular, small elongated gaps) and in uncut control sites, in six replicates. List of understory species was established and percentage cover of each species was estimated in 2 m x 2 m quadrats. The cover of shrub layer and the height of the understory vegetation was also estimated. Species richness, sum of the species cover and cover of 5 functional groups (annual forbs, perennial forbs, graminoids, woody regeneration and cover of Rubus fruticosus agg. as an individual species group) were calculated. Relative direct and diffuse light were estimated by hemispherical photographs, and volumetric soil water content was also measured.
DOI: 10.17632/cnw3htbbm9.1
title: Cooperative sensing of mitochondrial DNA by ZBP1 and cGAS promotes cardiotoxicity. Lei et al.

description: Confirmatory and raw data that was shared with reviewers but not included in the accepted paper. Detailed legends are included below each figure.
DOI: 10.17632/cnw3htbbm9.2
title: Cooperative sensing of mitochondrial DNA by ZBP1 and cGAS promotes cardiotoxicity. Lei et al.

description: Confirmatory and raw data that was shared with reviewers but not included in the accepted paper. Detailed legends are included below each figure.
DOI: 10.17632/n88vcjrk9p.1
title: Essential data for reproducing figure and tables in "Crust and upper mantle structures of the North China Craton from Eikonal tomography and shear velocity inversion"

description: The usage of each dataset is provided as folder descriptions.
DOI: 10.17632/ftw7r4n559.1
title: Microbial community dataset for Sphalerite and oyster shell SBBR Study

description: This file includes the microbial community composition, community change, and predicted function for the paper titled "Simultaneous N and P removal in sequencing batch biofilm reactors (SBBRs) with sphalerite-oyster shell media."
DOI: 10.17632/n88vcjrk9p.2
title: Essential data for reproducing figure and tables in "Crust and upper mantle structures of the North China Craton from Eikonal tomography and shear velocity inversion"

description: The usage of each dataset is provided as folder descriptions.
DOI: 10.17632/ftw7r4n559.2
title: Microbial Community Dataset For Sphalerite And Oyster Shell SBBR Study

description: This file includes the microbial community composition, community change, and predicted function for the paper titled "Simultaneous N and P removal in sequencing batch biofilm reactors (SBBRs) with sphalerite-oyster shell media."
DOI: 10.17632/g2g74cj4x7.1
title: Ichnologic and sedimentologic datasets from the Chapel Island Formation (Canada)

description: These datasets cover the ichnology and sedimentology of the Ediacaran–Cambrian Chapel Island Formation from Burin Peninsula, Newfoundland, Canada.
DOI: 10.17632/g2g74cj4x7.2
title: Ichnologic and sedimentologic datasets from the Chapel Island Formation (Canada)

description: These datasets cover the ichnology and sedimentology of the Ediacaran–Cambrian Chapel Island Formation from Burin Peninsula, Newfoundland, Canada.
DOI: 10.17632/2zkhz5nctk.1
title: Fully Consolidated Deposits from Oxide Dispersion Strengthened and Silicon Steel Powders via Friction Surfacing

description: This dataset includes:
Filename [file type]
A. Deposition Process Parameters and Deposit Morphology [PDF]
B. Raw force data for depositing FeAlOY [CSV]
C. Size distribution of powders [CSV]
D. EDS analysis of FeAlOY deposit and Fe-Si 6.8 wt% deposit [PDF]

The data presented in this study was collected by Aishwarya Deshpande, Christian Baumann, Patrick Faue, Michael Mayer, Gerald Ressel, Friedrich Bleicher, Frank E. Pfefferkorn.

This research used resources at the Mechanical Engineering department, University of Wisconsin-Madison, the Institute of Production Engineering and Photonic Technologies, TU-Wien and Materials Center Leoben.

The study was funded by the Austrian Marshall Plan Foundation endowed professorship (FFG Project Number 846946)

Accepted manuscript:
A. Deshpande, P. Faue, C. Baumann, M. Mayer, S. Krall, F. Bleicher, F. E Pfefferkorn, 2024, "Fully Consolidated Deposits from Oxide Dispersion Strengthened and Silicon Steel Powders via Friction Surfacing," Journal of Manufacturing Science and Engineering, ASME.
DOI: 10.17632/wyds2h3mrj.1
title: Systematic behaviour of 3He/4He in Earth’s continental mantle

description: Supplementary File 2. Modal mineralogy of mantle xenoliths, major element composition of olivine, orthopyroxene, clinopyroxene, spinel, garnet, amphibole, phlogopite, and ilmenite obtained by EMPA, and calculated whole-rock major element data of mantle xenoliths presented in this study (Tables S.1 – S.10). 
Supplementary File 3. Trace element data for standards, clinopyroxene, and amphibole obtained by LA-ICP-MS and calculated whole-rock trace element chemistry of mantle xenoliths presented in this study (Tables S.11 – S.14)
Supplementary File 4. 3He/4He compositions and concentrations of mineral phases, and calculated bulk xenolith 3He/4He of mantle xenoliths presented in this study (Tables S.15 – S.16).
Supplementary File 5. Spreadsheet with helium ingrowth model
Supplementary File 6. Spreadsheet with binary mixing model
DOI: 10.17632/djr98hbz2b.1
title: Model outputs for "The hydrology of the Jezero crater paleolake: Implications for the climate and limnology of the lake system from hydrological modeling"

description: This dataset include model outputs for the model runs discussed in Horvath, D. G. and Andrews-Hanna, J. C. (2024), The hydrology of the Jezero crater paleolake: Implications for the climate and limnology of the lake system from hydrological modeling, Earth and Planetary Science Letters, 635, 118690. http://doi.org/10.1016/j.epsl.2024.118690. Outputs for models provided in the supplementary material is also provided. Files are in ascii format. Two file types are included: 1) the Jezero lake morphology and hydrology for the three model sets discussed in the manuscript (Jezero_*.dat) and 2) the hydraulic head over the entire domain which can be used to derive water table depth and lake depths. The first files type includes lake level, lake depth, lake area, lake volume, influxes and outfluxes at Jezero crater as a function of aridity index for individual model sets (see paper for details). Hydraulic head information is not included for model set 'Jezero_hstrat.dat' as this model contains no subsurface component and thus all pertinent information is contained with the first file type for this model set. A file format readme is also included.
DOI: 10.17632/d3rjp2pfpt.1
title: Data Determination CBD THC

description: Raw data Determination of THC and CBD under different conditions
DOI: 10.17632/4w5fs96nj7.1
title: LINF_150013900

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/hgm9n7dj78.1
title: LINF_280020800

description: Protein of unknown function (DUF423); Leishmania infantum (strain JPCM5)
DOI: 10.17632/33bsbwjd2j.1
title: LDHU3_15.0470

description: Isoprenylcysteine alpha-carbonyl methylesterase; Leishmania donovani (HU3 strain)
DOI: 10.17632/35ffshsbcc
title: LINF_290007900

description: C2HC-type zinc finger-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/35ffshsbcc.1
title: LINF_290007900

description: C2HC-type zinc finger-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/2bj2fv73gn.1
title: LINF_150020200

description: nucleoside transporter 1; Leishmania infantum (strain JPCM5)
DOI: 10.17632/vd7xgr2y9h.1
title: LDHU3_15.0410

description: Ribonucleoprotein p18 mitochondrial precursor; Leishmania donovani (HU3 strain)
DOI: 10.17632/6k2r36vmww.1
title: LINF_280025600

description: Double-stranded DNA-binding domain containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/wz232wwhpz.1
title: LINF_150017300

description: protein phosphatase 2A regulatory subunit; Leishmania infantum (strain JPCM5)
DOI: 10.17632/2sk9j48pcs.1
title: LDHU3_15.0520

description: 60S acidic ribosomal protein P1a; Leishmania donovani (HU3 strain)
DOI: 10.17632/bc5d6f8nvd.1
title: Central American and Caribbean tourism destination competitiveness indicators from 2007 and 2015

description: This dataset contains 35 indicators valid to measure the competitiveness of 33 destinations (countries) from Central America and the Caribbean in 2007 and 2015. The indicators were grouped according to the Travel and Tourism Competitiveness Index, plus other additional indicators resulting from each country's tourism activity.
DOI: 10.17632/bc5d6f8nvd.2
title: Central American and Caribbean tourism destination competitiveness indicators from 2007 and 2015

description: This dataset contains 35 indicators valid to measure the competitiveness of 33 destinations (countries) from Central America and the Caribbean in 2007 and 2015. The indicators were grouped according to the Travel and Tourism Competitiveness Index, plus other additional indicators resulting from each country's tourism activity.
DOI: 10.17632/bc5d6f8nvd.3
title: Central American and Caribbean tourism destination competitiveness indicators from 2007 and 2015

description: This dataset contains 35 indicators valid to measure the competitiveness of 33 destinations (countries) from Central America and the Caribbean in 2007 and 2015. The indicators were grouped according to the Travel and Tourism Competitiveness Index, plus other additional indicators resulting from each country's tourism activity.
DOI: 10.17632/y3t6zphrdz.1
title: Mode-I fracture dataset of far-positioned PEI and PVDF interlayered epoxies

description: SPABOND™ 820HTA and SPABOND™ 840HTA wind turbine rotor blade adhesives are toughened with 0.5 mm thick PEI and PVDF thermoplastic interlayers and their plain strain fracture toughness is determined through single-edge-notch bending (SENB) experiments. The interlayers are positioned far (6.75 mm) from the initial notch to evaluate the unstable crack-arresting capability of the thermoplastic interlayers. The raw force-displacement datasets from pristine and thermoplastic interlayered SENB experiments are provided. The typical fracture behavior of interlayered specimens is recorded using a high-speed camera, and the corresponding videos are available here.
DOI: 10.6084/m9.figshare.28239131
title: Tetracladium marchalianum annotation

description: Tetracladium marchalianum annotation using funannotate.
DOI: 10.6084/m9.figshare.28239131.v1
title: Tetracladium marchalianum annotation

description: Tetracladium marchalianum annotation using funannotate.
DOI: 10.15468/dl.25qfj8
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is The Coleoptera collection (EC) of the Muséum national d'Histoire naturelle (MNHN - Paris)",
 "Geometry POLYGON((132.58425 -0.11642,130.18426 -0.70551,131.03516 -1.75278,131.90789 -4.02186,135.24606 -5.52731,138.01696 -6.29094,137.62423 -8.51639,141.57331 -9.47639,146.11148 -9.30184,149.2751 -10.9382,150.97692 -11.11275,151.4351 -10.19639,150.19147 -9.7382,149.0351 -8.36366,148.48965 -7.31639,147.9442 -5.85458,146.72238 -5.24367,145.91511 -4.45822,143.3624 -2.77823,139.93695 -1.84005,138.60605 -1.18551,136.77333 -1.94914,135.26788 -2.58186,134.61333 -1.60005,134.37333 -0.88005,133.98061 -0.24733,132.58425 -0.11642))"
 ]
}

 The dataset includes 145 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004195-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/xbdjm87c2s.1
title: Salidroside directly activates HSC70, revealing a new role for HSC70 in BDNF signalling and neurogenesis after cerebral ischemia

description: Salidroside is a key bioactive component of Rhodiola species that are widely used as traditional medicines. Among them, Rhodiola crenulata is cited as a traditional Chinese medicine to treat stroke in the Chinese Pharmacopoeia. This therapeutic action of Rhodiola crenulata may involve neurogenesis, as it is known that Rhodiola crenulate enhances hippocampal neurogenesis against streptozotocin-induced neural injury in rats, probably through protecting neural stem cells by salidroside. Salidroside has attracted considerable attentions as a potential agent for the clinic, as it exhibits neuroprotective properties across a remarkably wide time window in a variety of experimental stroke models. However, whether salidroside induces neurogenesis after cerebral ischemia and its primary molecular targets remain unknown.To explore whether salidroside induces neurogenesis after cerebral ischemia, and whether the neurogenic and neuroprotective effects of salidroside are through interaction with heat shock cognate 71-kDa protein (HSC70) as its primary molecular target.
DOI: 10.5281/zenodo.14608757
title: Interfacial structure and protein incorporation in sparsely tethered phospholipid membranes : Data

description: Abstract for the Article:

We describe herein a cell membrane mimicking system designed for bioanalytical applications. Our tethered bilayer lipid membrane (tBLM) is based on mixed self-assembled monolayers (SAMs) on gold terminated by linear hydrophobic tethers. Based on the previous studies, the latter are either randomly distributed over the SAM surface or phase-segregated into nanoclusters of at least 40 molecules. We have prepared and analyzed a series of tBLMs covering a range of conditions in terms of membrane phase (gel vs. fluid phases), type of substrate attachment (floating vs. tethered) and electrostatics (zwitterionic PC and negatively charged PG lipids). We studied the interfacial tBLM structure by employing neutron reflectometry (NR). In all cases, the NR analysis revealed formation of high coverage tBLMs where the lipid bilayer was separated from the SAM by a highly hydrated interlayer of 5-6 Å. Notably, the 1-stearoyl-2-oleoyl-sn-glycero-3-phosphocholine (SOPC) tBLM on a substrate presenting nanoscale tether clusters had a larger solution interlayer thickness around 12 Å. We relate this structural feature of the tBLM to the structural mismatch between the tether clusters and the kink in the oleoyl leg of the SOPC lipid. Further on, as a proof of concept we have successfully reconstituted the deuterated outer membrane protein F (OmpF) from E. coli into our tBLM system and confirmed the protein insertion by NR. Thus, the presented cell membrane mimicking platform is promising for quantitative studies of lipid and protein structures and interactions taking place at the cell membrane.

Here:

The Neutron Reflectometry data and data analysis scripts for the rascal software are found. As is the qaurtz crystal microbalance data.
DOI: 10.5281/zenodo.14608758
title: Interfacial structure and protein incorporation in sparsely tethered phospholipid membranes : Data

description: Abstract for the Article:

We describe herein a cell membrane mimicking system designed for bioanalytical applications. Our tethered bilayer lipid membrane (tBLM) is based on mixed self-assembled monolayers (SAMs) on gold terminated by linear hydrophobic tethers. Based on the previous studies, the latter are either randomly distributed over the SAM surface or phase-segregated into nanoclusters of at least 40 molecules. We have prepared and analyzed a series of tBLMs covering a range of conditions in terms of membrane phase (gel vs. fluid phases), type of substrate attachment (floating vs. tethered) and electrostatics (zwitterionic PC and negatively charged PG lipids). We studied the interfacial tBLM structure by employing neutron reflectometry (NR). In all cases, the NR analysis revealed formation of high coverage tBLMs where the lipid bilayer was separated from the SAM by a highly hydrated interlayer of 5-6 Å. Notably, the 1-stearoyl-2-oleoyl-sn-glycero-3-phosphocholine (SOPC) tBLM on a substrate presenting nanoscale tether clusters had a larger solution interlayer thickness around 12 Å. We relate this structural feature of the tBLM to the structural mismatch between the tether clusters and the kink in the oleoyl leg of the SOPC lipid. Further on, as a proof of concept we have successfully reconstituted the deuterated outer membrane protein F (OmpF) from E. coli into our tBLM system and confirmed the protein insertion by NR. Thus, the presented cell membrane mimicking platform is promising for quantitative studies of lipid and protein structures and interactions taking place at the cell membrane.

Here:

The Neutron Reflectometry data and data analysis scripts for the rascal software are found. As is the qaurtz crystal microbalance data.