cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/inscriptifact-ouc110605707
title: Persepolis Fortification Aramaic Text 557, PFAT 557

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] PFAT 557 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription on obverse, reverse and bottom edge. Seal impression on reverse?. ❧ [Physical Object Note:] Large crack from round edge to middle on obverse with minimal crack throughout surface. Reverse chips and cracks on round edge, upper edge and flat edge.
DOI: 10.25549/inscriptifact-ouc110607626
title: Persepolis Fortification Aramaic Text 611, PFAT 611

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PFAT 611 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription on obverse, reverse (?), bottom edge, upper edge and round edge. Seal impression on reverse and bottom edge. ❧ [Physical Object Note:] Bottom edge chipped and broken. Large cracks on bottom edge and flat edge.
DOI: 10.25549/inscriptifact-ouc110605706
title: Persepolis Fortification Aramaic Text 557, PFAT 557

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] PFAT 557 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription on obverse, reverse and bottom edge. Seal impression on reverse?. ❧ [Physical Object Note:] Large crack from round edge to middle on obverse with minimal crack throughout surface. Reverse chips and cracks on round edge, upper edge and flat edge.
DOI: 10.25549/inscriptifact-ouc110607617
title: Persepolis Fortification Aramaic Text 611, PFAT 611

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PFAT 611 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription on obverse, reverse (?), bottom edge, upper edge and round edge. Seal impression on reverse and bottom edge. ❧ [Physical Object Note:] Bottom edge chipped and broken. Large cracks on bottom edge and flat edge.
DOI: 10.15468/dl.fmekre
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004357-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.utklc3
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004366-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.75cv2w
title: Occurrence Download

description: A dataset containing 1894 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Busycotypus canaliculatus (Linnaeus, 1758))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1894 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074608-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nn3j9b
title: Occurrence Download

description: A dataset containing 1627 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salix rehderiana C.K.Schneid."
 ]
}

 The dataset includes 1627 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074609-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m9o0xt
title: Occurrence Download

description: A dataset containing 378130148 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Animalia"
 ]
}

 The dataset includes 378130148 records from 6186 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004366-150811131857512/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pgehqb
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Andrena dapsilis LaBerge, 1971"
 ]
}

 The dataset includes 16 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012044-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/n3jq88
title: Khomustakh Lake pollen dataset

description: Raw data for the Khomustakh Lake pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.3k8px8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brachiaria mutica",
 "Country is Dominica",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016684-250802193616735/datasets/export for details.
DOI: 10.15468/dl.cg6d58
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Microgenys weyrauchi)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016685-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k54gkv
title: Occurrence Download

description: A dataset containing 7913 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Calycanthus floridus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7913 records from 139 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016687-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wtwmn6
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eviota indica"
 ]
}

 The dataset includes 56 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016686-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/n3b07s
title: Kirk Lake pollen dataset

description: Raw data for the Kirk Lake pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.zcrn6b
title: Occurrence Download

description: A dataset containing 1349 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Semnopithecus entellus)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 1349 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016688-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/n36633
title: Kitchner Lake pollen dataset

description: Raw data for the Kitchner Lake pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.98k3ah
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Semnopithecus entellus)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016690-250802193616735/datasets/export for details.
DOI: 10.21233/n32h16
title: Blackhawk Lake pollen surface sample dataset

description: Raw data for the Blackhawk Lake pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.n63ss3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Semnopithecus entellus)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016689-250802193616735/datasets/export for details.
DOI: 10.5066/p1dvzpuv
title: Water and algal chemistry measurements collected from the National Park Service's National Park of American Samoa (NPS-NPSA) Ofu Island unit

description: Geochemical analysis of coastal springs and possible source waters were conducted in the National Park Service's National Park of American Samoa (NPS-NPSA) Ofu Island unit. Water samples were analyzed for dissolved nutrients, nitrate isotopes (delta-18-O and delta-15-N). Algae samples were collected and analyzed for delta-15-N and delta-13-C values.
DOI: 10.15468/dl.ybr727
title: Occurrence Download

description: A dataset containing 559 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Nucifraga multipunctata)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 559 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016692-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/n3ht7m
title: Site 1 (Heide unpublished) pollen surface sample dataset

description: Raw data for the Site 1 (Heide unpublished) pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/n3d150
title: Site 2 (Heide unpublished) pollen surface sample dataset

description: Raw data for the Site 2 (Heide unpublished) pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.qvxxfs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brachiaria mutica",
 "Country is Grenada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016694-250802193616735/datasets/export for details.
DOI: 10.25573/serc.29832347
title: Supplemental Data and Results Package for Pappalardo et al (2025) publication "Taxon-specific BLAST percent identity thresholds for identification of unknown sequences using metabarcoding"

description: This data package includes input data and results associated with the publication “Taxon-specific BLAST percent identity thresholds for identification of unknown sequences using metabarcoding” by Pappalardo et al. (2025) in Methods in Ecology and Evolution. We developed taxon-specific confidence thresholds for marine eukaryotes to improve the performance of BLAST-based assignment methods. To benchmark the taxonomic assignments and generate the thresholds, we used the MIDORI2 reference database. We also tested our approach using published whole-community DNA datasets and evaluated factors that affect the accuracy of taxonomic assignments. We provide confidence thresholds for multiple taxonomic levels using the mitochondrial cytochrome c oxidase subunit I (COI) and large ribosomal RNA (lrRNA or 16S rRNA in metazoans) to achieve five false positive error rates (0%, 1%, 5%, 10%, and 20%). Additionally, we tested two methods to pick the BLAST final hit, the best-hit and best-shared (similar to the lowest common ancestor) methods. Our results suggest that using taxon-optimized thresholds can increase taxonomic assignment at higher taxonomic levels while preventing misclassifications at lower taxonomic levels. By defining a predefined error rate, the user can decide on the acceptable error for their study goal. The paper has a companion R Shiny application for a user-friendly way to apply the thresholds to users’ datasets. The R Shiny application is available at [https://shiny.si.edu/ebbs_blast_filter/](https://shiny.si.edu/ebbs_blast_filter/) and [https://paulapappalardo.shinyapps.io/ebbs_blast_filter/](https://paulapappalardo.shinyapps.io/ebbs_blast_filter/).
DOI: 10.25573/serc.29832347.v1
title: Supplemental Data and Results Package for Pappalardo et al (2025) publication "Taxon-specific BLAST percent identity thresholds for identification of unknown sequences using metabarcoding"

description: This data package includes input data and results associated with the publication “Taxon-specific BLAST percent identity thresholds for identification of unknown sequences using metabarcoding” by Pappalardo et al. (2025) in Methods in Ecology and Evolution. We developed taxon-specific confidence thresholds for marine eukaryotes to improve the performance of BLAST-based assignment methods. To benchmark the taxonomic assignments and generate the thresholds, we used the MIDORI2 reference database. We also tested our approach using published whole-community DNA datasets and evaluated factors that affect the accuracy of taxonomic assignments. We provide confidence thresholds for multiple taxonomic levels using the mitochondrial cytochrome c oxidase subunit I (COI) and large ribosomal RNA (lrRNA or 16S rRNA in metazoans) to achieve five false positive error rates (0%, 1%, 5%, 10%, and 20%). Additionally, we tested two methods to pick the BLAST final hit, the best-hit and best-shared (similar to the lowest common ancestor) methods. Our results suggest that using taxon-optimized thresholds can increase taxonomic assignment at higher taxonomic levels while preventing misclassifications at lower taxonomic levels. By defining a predefined error rate, the user can decide on the acceptable error for their study goal. The paper has a companion R Shiny application for a user-friendly way to apply the thresholds to users’ datasets. The R Shiny application is available at [https://shiny.si.edu/ebbs_blast_filter/](https://shiny.si.edu/ebbs_blast_filter/) and [https://paulapappalardo.shinyapps.io/ebbs_blast_filter/](https://paulapappalardo.shinyapps.io/ebbs_blast_filter/).
DOI: 10.21233/n38b2q
title: Site 3 (Heide unpublished) pollen surface sample dataset

description: Raw data for the Site 3 (Heide unpublished) pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.eysy4b
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brachiaria mutica",
 "Country is Ecuador",
 "HasCoordinate is true"
 ]
}

 The dataset includes 28 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016693-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/n34j0s
title: Site 4 (Heide unpublished) pollen surface sample dataset

description: Raw data for the Site 4 (Heide unpublished) pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/n30t7z
title: Site 5 (Heide unpublished) pollen surface sample dataset

description: Raw data for the Site 5 (Heide unpublished) pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.