cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/yz5jgp2b94
title: An MCHF atomic-structure package for large-scale calculations

description: Abstract An MCHF atomic-structure package is presented based on dynamic memory allocation, sparse matrix methods, and a recently developed angular library. It is meant for large-scale calculations in a basis of orthogonal orbitals for groups of LS terms of arbitrary parity. For Breit-Pauli calculations, all operators-spin-orbit, spin-other orbit, spin-spin, and orbit-orbit-may be included. For transition probabilities the orbitals of the initial and final state need not be orthogonal. A bi-orthogonal ... Title of program: ATSP2K Catalogue Id: ADLY_v2_0 Nature of problem This program determines energy levels and associated wave functions for states of atoms and ions in the MCHF (LS) or Breit-Pauli (LSJ) approximation. Given the wave function, various atomic properties can be computed such as electric (Ek) and magnetic (Mk) multipole radiative transition probabilities (k max =10) between LS or LSJ states, isotope shift constants, hyperfine parameters, and gJ factors. Versions of this program held in the CPC repository in Mendeley Data ADLY_v1_0; ATSP_MCHF version 1.00; 10.1016/S0010-4655(00)00009-6 ADLY_v2_0; ATSP2K; 10.1016/j.cpc.2007.01.006 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.6084/m9.figshare.18093359.v1
title: Thematic Anaylsis Master Table of SCSW

description: Table of Thematic Analysis conducted during Phase I of Social Cynicism Scale for Women (SCSW)
DOI: 10.6084/m9.figshare.7286276.v1
title: README for Sinella curviseta

description: lists and figshare links for supporting files
DOI: 10.6084/m9.figshare.1314131.v8
title: Single-cell analysis challenges the connection between autophagy and senescence induced by DNA damage

description: Autophagy and senescence have been described as central features of cell biology, but the interplay between these mechanisms remains obscure. Using a therapeutically relevant model of DNA damage-induced senescence in human glioma cells, we demonstrated that acute treatment with temozolomide induces DNA damage, a transitory activation of PRKAA/AMPK-ULK1 and MAPK14/p38 and the sustained inhibition of AKT-MTOR. This produced a transient induction of autophagy, which was followed by senescence. However, at the single cell level, this coordinated transition was not observed, and autophagy and senescence were triggered in a very heterogeneous manner. Indeed, at a population level, autophagy was highly negatively correlated with senescence markers, while in single cells this correlation did not exist. The inhibition of autophagy triggered apoptosis and decreased senescence, while its activation increased temozolomide-induced senescence, showing that DNA damage-induced autophagy acts by suppressing apoptosis.
DOI: 10.6084/m9.figshare.17125520.v5
title: Data Set (D-Dimer).xlsx

description: This was a retrospective observational study in 259 critically ill COVID-19 patients requiring intensive care unit admission between March and December 2020. We compared the mortality rate between patients with and without elevated D-dimer
DOI: 10.6084/m9.figshare.20050940.v1
title: Chromosome level reference genome for European flat oyster (Ostrea edulis L.)

description: Data associated with the manuscript - Chromosome level reference genome for European flat oyster (Ostrea edulis L.) <br> <br> <br> <br>
DOI: 10.6084/m9.figshare.24978516.v1
title: <b>Enhanced direct radiative effect by black carbon with particle-resolved mixing structures</b>

description: The data for Figure 2-5 and the codes for machine learning.
DOI: 10.6084/m9.figshare.2759983.v1
title: Diversity and distribution of haptophytes reavealed by environmental sequencing - a review. Perspectives in Phycology. Supplementary material.

description: <b></b> <b>7. Fig. S1. </b>Maximum-likelihood tree<b> </b>(RAxML v. 8.026, GTRCAT) based on 971 haptophyte 18S rRNA gene sequences from Table S1, 451 are from cultured strains and 520 from environmental clone libraries. Bootstrap values are marked at the nodes. The colours indicate taxonomic groups. <b>8. Table S1. </b>Haptophyte 18S rRNA gene sequence reference database including 971 sequences, 451 from cultures and 520 from environmental clone libraries. See File S1 for description of its construction. Chimeras (32) identified by uchime in mothur and by manual blast are listed on sheet 2. <b>9. Table S2</b>. Information on selected, commonly used PCR primers for environmental sequencing and metabarcoding of haptophytes. <b>10. File S1.</b> Description of the construction of the Haptophyte 18S rRNA gene reference sequence database, alignment and final RAxML phylogenetic tree. <b>11. File S2. </b>Fasta file with accession numbers and 18S rRNA gene sequence of 971 reference sequences for taxonomic assignment in mothur or Qiime. <b>12. File S3. </b>Taxonomy file with systematic placement of 971 haptophyte reference sequences for taxonomic assignment in mothur or Qiime. <b>13. File S4. </b>Curated haptophyte 18S rRNA gene alignment for Figs 2 and S1.
DOI: 10.6084/m9.figshare.9598709.v1
title: Appendix B Chapter IV: CLIMATIC DRIVERS OF AVIAN SPECIES RICHNESS ACROSS THE ANDES

description: Lower and upper elevational limits and Raw data base extracted from 16 elevational gradients. <br>5.- Table S1. Lower and upper elevational limits of 2191 species recorded among 16 plots across the Andes. Taxonomic names and ranges are primary based on IUCN redlist 2019 ranges and Quintero & Jetzs 2018. <br>6.- Table S2. Raw data base extracted from 16 elevational gradients (~1000 points/site) across the Andes.<br>
DOI: 10.17632/cvtwgscw86
title: The Impact of Green Bond Issuance on Firm’s Green Resource Allocation Efficiency: Insight from Green Total Factor Productivity

description: This research examines the effect of green bond issuance (GBI) on firm’s green resource allocation efficiency (FGRAE) and explores the underlying mechanisms. The results show that GBI significantly improve FGRAE, mainly by contributing to technical progress and best green technology gap. The results hold under various robustness checks, primarily including a placebo test, propensity score matching (PSM), greenwashing test, and heterogeneous treatment effects. Further mechanism analysis reveals the mediating role of promoting green innovation, alleviating financing constraints, and increasing investor attention in positive effect of GBI on FGRAE. We observe stronger effects in firms with larger size, lower debt liability and higher R&D investment, industries with higher pollution intensity, and regions with stricter climate regulation through heterogeneity analysis. Further analysis finds that firms with multiple GBI (MGBI) experience a stronger positive impact on FGRAE, and green bonds issued for refinancing show no substantial effect. Our empirical findings emphasize the role of GBI in driving synergies between the environmental and economic performance, rather than merely serving as a greenwashing tool.
DOI: 10.17632/9xdkxnt2z3
title: Dataset wayuu

description: Technological skills are currently part of educational programs in university education, since they affect the consolidation and construction of new knowledge. Additionally, they develop skills that allow them to locate, evaluate, use and communicate information in all professional specialties, achieving an adaptation to the demands of society. Added to this, it reduces the digital divide and the inclusion of indigenous ethnic groups. In Colombia, the Wayuu ethnic group resides in the Department of Guajira, which is part of the population of students from public universities. The data in this article shows the competences Wayuu students have with the use of technological tools in their academic activities. The data was collected through a Likert questionnaire from students at public universities and processed through statistical software. The data show that digital literacy is an issue that develops skills to use effectively, technological tools in academic and professional settings.
DOI: 10.17632/rn8yvtmtxx
title: Montelukast effect on chicken neuron proteomics

description: Proteomics data from chicken neurons treated with montelukast.
Cells were collected for protein extraction and mass spectrometry-based proteomics under a shotgun proteomics approach on a Bruker Impact II QqTOF. Raw data were converted to mzXML with ProteoWizard. For more info, please refer to the associated paper or contact the authors.
DOI: 10.6084/m9.figshare.12037740.v1
title: Copy of Summary_Twitchell Sherman graph for report.xlsx

description: Sedimentation erosion table data from Twitchell and Sherman Island in the Sacramento San Joaquin Delta.<br>
DOI: 10.6084/m9.figshare.23946765.v1
title: Isoform-resolved genome annotation enables mapping of tissue-specific betalain regulation in amaranth

description: Supplementary data for the publication "Isoform-resolved genome annotation enables mapping of tissue-specific betalain regulation in amaranth". Amaranthus hypochondriacus reference genome and annotation v2.2 are available as individual files and included in the supplementary data alongside functional annotation, pathway annotation and gene expression quantification.
DOI: 10.6084/m9.figshare.27080794.v1
title: Unraveling overoptimism and publication bias in ML-driven science - Data for Experiment 2 and 3

description: In this folder, problem_1_all_20_M1_CIU and problem_2_all_20_M1_CIU provides necessary data for the two problems in the Experiment 2.real_data_CI_Speech provides meta data for speech-based classification of cognitive impairment that is not AD.real_data_AD_Speech provides meta data for speech-based classification of Alzheimer's disease..real_data_SCH_MRI provides meta data for neuroimaging-based classification of Schizophrenia.real_data_AD_MRI provides meta data for neuroimaging-based classification of Alzheimer's disease.real_data_AD_MRI provides meta data for neuroimaging-based classification of ADHD.real_data_ASD_MRI provides meta data for neuroimaging-based classification of ASD.real_data_Aut_MM provides meta data for multi-modal classification of ASD.<br><br><br>
DOI: 10.17632/7wddm84w9r
title: International Trade and Social Connectedness

description: Replication code and data for "International Trade and Social Connectedness." See the readme files for instructions on how to run the code.
DOI: 10.17632/ftwh7wzzy8
title: Adsorption data of heavy metals lead and cadmium by biochar

description: Adsorption data of heavy metals lead and cadmium by biochar, where input characteristics include elemental analysis, industrial analysis, three-component analysis of biochar, adsorption physical and chemical properties of biochar and characteristics of heavy metal wastewater, etc.
DOI: 10.17632/xg46mvpwdz
title: Neurometabolic profile of the amygdala in smokers assessed with 1H-magnetic resonance spectroscopy - Data

description: 1H-magnetic resonance spectroscopy (MRS) data and participant information for the article with the title: Neurometabolic profile of the amygdala in smokers assessed with 1H-magnetic resonance spectroscopy. The aims of the study were to compare glutamate and other metabolites in the amygdala (an area implied to play an important role in nicotine addiction) between smokers and controls, and between different smoking states. Furthermore, associations between amygdalar metabolite levels and smoking characteristics were explored. The data set comprises 28 male smokers and 21 non-smoking, matched controls. Controls were measured once (baseline) and smokers were measured in a baseline state (1-3 hours abstinence), during withdrawal (24 hours abstinence) and in a satiation state (directly after smoking). Voxel composition, spectral quality, and for the metabolites of interest, Cramér-Rao lower bounds and molar concentrations were measured using a novel non-water-suppressed 1H-MRS protocol. Good spectral quality, high anatomical specificity and reliable quantification of most metabolites of interest were achieved, providing first insights into the neurometabolic profile of the amygdala in smokers. Metabolite levels did not differ between groups, but smokers showed significantly lower glutamine levels at satiation than baseline. Details of the procedure and analysis are provided in the article (https://doi.org/10.1016/j.neuroimage.2024.120525).
DOI: 10.6084/m9.figshare.16610356.v1
title: polarizaton data.dat from Effect of Ag alloying and trace precipitation on corrosion resistance of Ti-Ta-Ag ternary alloy

description: This work systematically analysed the electrochemical and corrosion behaviour of Ti-Ta-Ag ternary alloy samples in Hank's solution. For the samples with 1.5% and 3% Ag content, the sintering temperature increased from 750 to 950°C, and the corresponding corrosion resistance increased by 100 times due to the increased alloying of Ag; meanwhile for the sample with 4.5% Ag content, the sintering temperature increased from 750 to 950°C, and the corresponding corrosion resistance decreased by six times due to the increased precipitation of Ag. These tests prove that the Ag alloying is beneficial to the enhancement of the corrosion resistance of Ti-Ta-Ag ternary alloy, but the Ag trace precipitation has the opposite effect. A series of electrochemical characterizations and density functional theory calculations explain the mechanism of the above phenomenon. Ag alloying can promote the formation of uniform, complete, dense, stable and thick passivation layer on the surface of Ti-Ta-Ag ternary alloy, which makes Ti-Ta-Ag ternary alloy uniformly corroded without pitting. In addition, Ag alloying can effectively reduce the contact resistance of the solid–liquid interface. However, the trace precipitation of Ag plays the opposite role to the above effect.
DOI: 10.6084/m9.figshare.17108402.v1
title: Table 1. Supplementary material

description: Complementary and complete data from the project Grand Challenges Explorations Brazil – New Approaches to Characterize the Global Burden of Antimicrobial Resistance (OPP1193112).
DOI: 10.6084/m9.figshare.19728106.v1
title: education and life satisfaction data.xlsx

description: Education Life satisfaction Health income
DOI: 10.6084/m9.figshare.24718512.v1
title: MODIS EVI (2017-2022)

description: MODIS 16-day Enhanced Vegetation Index (EVI) from 2017 to 2022. Resampled to 0.25 degrees.
DOI: 10.6084/m9.figshare.5928556.v1
title: THE GENETIC ARCHITECTURE OF ADAPTATION: CONVERGENCE AND PLEIOTROPY IN HELICONIUS WING PATTERN EVOLUTION

description: This is genotype and phenoytype data from the QTL analyses for the paper:<br>THE GENETIC ARCHITECTURE OF ADAPTATION: CONVERGENCE AND PLEIOTROPY IN HELICONIUS WING PATTERN EVOLUTION<br><br>Each Zip archive, contains R scripts and data needed for each analysis<br>
DOI: 10.14749/27645246
title: South African Social Attitudes Survey (SASAS) 2011: Financial Literacy Survey (FSB) - All provinces

description: <p> The FSB used a multidimensional approach to financial literacy, which centres on four principal domains: namely, day-to-day money management, financial planning, choosing appropriate products, and financial knowledge and understanding. The questionnaire was structured in a way as to capture these domains. Respondents had to complete all questions in all sections.</p><p> The data set for dissemination contains 2972 cases and 897 variables.</p>
DOI: 10.17632/jcyt9grfjv
title: DSP data from Spatial TIL in MSI CRC study

description: Raw data of GeoMx DSP analysis using MSI-H colorectal cancer tissues
DOI: 10.17632/mcr7vd5f5d
title: Music therapy tele-intervention for Chinese college students with anxiety and depression during COVID-19 pandemic: A pilot, randomized controlled study

description: This is a pilot, randomized controlled trial study aimed to examine the effect of music therapy tele-intervention in reducing anxiety and depression for college students under the COVID-19 pandemic. Sixteen Chinese college students were recruited and randomly assigned to music therapy relaxation group (MT), support group and control group. Both MT and support groups received four 60-minute sessions over the period of two weeks. The Chinese version of the Beck Anxiety Inventory scale (BAI-C) and the Chinese version of the Beck Depression Inventory-13 scale (BDI-13) were used to assess the state of anxiety and depression. A follow-up assessment was taken two weeks after the post-test. Results indicated significant decrease in symptoms of depression and anxiety for participants in the MT group. The findings suggested the sustained effectiveness of the music therapy intervention, as evidenced by the continued reduction of symptoms two weeks after the intervention. The considerations of applying music therapy tele-intervention with Chinese college students during the pandemic were discussed.
DOI: 10.35092/yhjc.10250342.v1
title: GFP-Rab11A intracellular movement in Latrunculin A (1 µm) treated A549 cells

description: TIFF series of diSPIM datasets, fused and deconvolved, from A549 GFP-Rab11A cells treated with Latrunculin A (1 µm). Each TIFF file is a full cell volume of 50 planes, with isotropic resolution of 330nm, each .zip file is an independent replicate with at least 1 or 2 cells analyzed for 3D tracking of cytoplasmic foci with 500 time stamps. These data correspond to Supplementary Movie 5 and analysis of these movies provided data presented in Figure 3 and Supplementary Figure 4.<br>Supplementary Movie 5: A549 GFP-Rab11A cells under latrunculin A treatment. <br>Figure 3: Motion Dynamics of Rab11A under the effect of cytoskeletal depolymerizing drugs.<br>Supplementary Figure 4: Impact of skeletal depolymerizing drugs on the transport of Rab11A.
DOI: 10.6084/m9.figshare.12137220.v1
title: HFMD Virome

description: R script for virome analysis
DOI: 10.6084/m9.figshare.5477491.v1
title: Allen Brain Atlas: Mouse gene expression data

description: These data were downloaded using python and the AllenSDK, and then imported and processed in Matlab. The dataset is a newer version of that analyzed in our paper: Fulcher, B. D. & Fornito, A. A transcriptional signature of hub connectivity in the mouse connectome. <i>Proc. Natl. Acad. Sci. USA</i> <b>113</b>, 1435 (2016).<br>The data file, <b>AllenGeneDataset.mat</b>, contains gene expression data from 25469 section datasets, across 19419 genes, for 213 structures in the Allen Brain Atlas.The data is formatted in a Matlab structure with four components:<b><br></b><b>GeneExpData</b> contains fields for 'energy', 'density' (the expression energy and expression density of each section dataset), and also 'gene_energy' and 'gene_density' (the expression energy and density for each gene, after averaging across repeat section datasets)<br><br><b>sectionDatasetInfo</b> is a table that contains information about each section dataset: entrez_id of the gene, plane_of_section_id of the experiment (i.e., coronal, 1, or sagittal, 2), and the section_id. Each row labels columns of the 'energy' and 'density' matrices of GeneExpData.<br><br><b>geneInfo</b> contains information about each gene, with rows labeling the columns of the matrices in GeneExpData. Provides the acronym, entrez_id, gene_id, and name for each gene.<br><b>structInfo</b> labels the structure information for the 213 structures in the mesoscale mouse connectome reported by Oh, S. W. et al. A mesoscale connectome of the mouse brain. <i>Nature</i> <b>508</b>, 207 (2014). Each structure is labeled with its acronym, color_hex_triplet, id, name, and divisionLabel. Each row in this table corresponds to a row of the matrices in <b>GeneExpData</b>.<br><br>Note that ALL DATA in this repository were retrieved directly from the Allen Institute's API. If these data help you, then please acknowledge the amazing work and open science policies of the Allen Institute. For specific details of accreditation, please refer to the Allen Institute's citation policy if you use these data (link below).<br>Please contact me if you'd like any more information about how these data were put together. For example, if you'd like the raw files from the <b>allensdk</b> that haven't been processed in Matlab, or if you require more information about how the data were retrieved from the Allen SDK and processed using <b>Matlab</b>. I plan to make the code framework available on github when I find the time.
DOI: 10.17632/3r9r4s5yvm
title: Raw data in article submitted to Data in Brief (Tarpley et al., 2021)

description: The data lists the raw assay data for a high throughput screen of DYRK1A to identity inhibitors (raw data for Table 1). The data shows the raw data for differential effects of harmine and analogs on two glioma cancer cell lines as assessed by Presto Blue for cell viability (raw data for Fig 2) and for cell proliferation, nuclear size and plasma membrane integrity (raw data fro Fig 3.)
DOI: 10.17632/8kjcztbjz2
title: ImageWeeds: An Image dataset consisting of weeds in multiple formats to advance computer vision algorithms for real-time weed identification and spot spraying application

description: Dataset consists of aerial and greenhouse images in multiple formats to advance computer vision algorithms for site-specific spraying applications.
DOI: 10.17632/k7fnj5ks6n
title: Baobab Detection and Analysis to Evaluate Anthropogenic Legacies in Eastern Africa

description: This data is related to a paper which evaluated different methods for detecting baobab trees in drone imagery, with the aim of comparing them to archaeological sites in eastern Africa.

This dataset contains:

1. An ArcGIS Pro geodatabase, with a shapefile of hand-digitized baobab locations for Unguja Island, shapefile data of archaeological sites, shapefiles of settlement data digitized from a 1907 map of the island, squares showing seasonal data for the ZMI imagery, and an outline of the island created from SRTM elevation data, shapefiles and rasters of the automated detection training and testing files, and the results of automated detection using the Max Likelihood classifier, sorted by circularity and pixel size.
2. Excel files showing the nearness analysis for baobab trees, with the raw data and tables available
3. Excel files with confusion matrices for the automated detection in different seasons
4. Python code used for the tree detection viewer
5. A ReadMe file with all workflows described in detail
DOI: 10.17632/t38rw5fg82
title: A ShinyApp for scRNA-seq analysis

description: This R Shiny software provides a simple interactive graphical user interface for exploring scRNAseq data, assessing the biological relevance of clustering results, and performing trajectory analysis with STREAM and the scVelco algorithm.
DOI: 10.17632/t73mbbnrzk
title: Fate of Yersinia pseudotuberculosis in raw fermented meat products

description: Data on survival of Y. pseudotuberculosis, pH and water activity in two different types of raw fermented meat products during processing and storage (Teewurst and dry fermented sausage), with initial concentration of 8 log, 6 log and 3 log CFU/g. Results obtained by both enumeration and detection methods.
DOI: 10.6084/m9.figshare.12480077.v1
title: Data for "Effects of grazing, wind erosion, and dust deposition on plant community composition and structure in a temperate steppe"

description: Data for "Effects of grazing, wind erosion, and dust deposition on plant community composition and structure in a temperate steppe", which was accepted for publication in Ecosystems.