cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28623329.v1
title: Asymmetry of Pound–Drever–Hall error signal induced by spatial modes coherence

description: we revise the theoretical expression of the PDH error signal according to the theory of coherence between the higher-order modes and the fundamental mode and give the analytical equation of the asymmetry of the PDH error signal. The validation of this theory has been provided by both numerical simulation and experiment.
DOI: 10.6084/m9.figshare.28440224.v1
title: Source Data

description: <b>Surface Lipoprotein Sorting by Crosstalk Between Lpt and Lol Pathways in Gram-Negative Bacteria</b>
DOI: 10.6084/m9.figshare.24633702.v2
title: CGCGNN datasets

description: A novel graph neural network model called CGCGNN to predict materials property. jdft_3d-8-18-2021.json is Jarvis-DFT dataset. Megnet.json is MP dataset. predicted_mixed_perovskites_computed_entries.tar is perovskites dataset.
DOI: 10.6084/m9.figshare.14522778.v4
title: Assessing Preoperative Hope and Expectations Related to Functional Neurosurgery: A New Questionnaire.

description: Included files: <br>1. Dataset “<b>Exploratory Factor Analysis Data</b>” contains data for items selection (based on abstract vs. concrete features) and for reliability analyses, using the JASP Software (Version 0.12.1.0); (CSV).<br>2. Dataset “<b>Psychometric properties & Group comparisons</b>” contains data for conducting regression analyses (aimed at examining independent correlations between PHEQ measures and the other variables of interest) and group comparisons, using the Statistica Software (Version 13.5); (XLSX).<br>3. <b>Explanatory memo</b>: explanations of the content of enclosed files and help with regard to the analysis; (PDF).<b><br></b>4. <b>Syntax</b>: Contains the detailed procedure using the JASP (Version 0.12.1.0) and the Statistica (Version 13.5) softwares; (PDF).<br>5. <b>Output; Descriptive statistics</b>: results from the softwares that have been used for the analysis; (PDF).<br>
DOI: 10.6084/m9.figshare.22559539.v1
title: Supplementary Material for: In utero exposure to valproic acid throughout pregnancy causes phenotypes of autism in offspring mice

description: Valproic acid (VPA) is an antiepileptic drug that inhibits the epileptic activity of neurons mainly by inhibiting sodium channels and GABA transaminase. VPA is also known to inhibit histone deacetylases, which epigenetically modify the cell proliferation/differentiation characteristics of stem/progenitor cells within developing tissues. Recent clinical studies in humans have indicated that VPA exposure in utero increases the risk of autistic features and intellectual disabilities in offspring; we previously reported that low-dose VPA exposure in utero throughout pregnancy increases the production of projection neurons from neuronal stem/progenitor cells that are distributed in the superficial neocortical layers of the fetal brain. In the present study, we found that in utero VPA-exposed mice exhibited abnormal social interaction, changes in cognitive function, hypersensitivity to pain/heat, and impaired locomotor activity, all of which are characteristic symptoms of autistic spectrum disorder in humans. Taken together, our findings indicate that VPA exposure in utero throughout pregnancy alters higher brain function and predisposes individuals to phenotypes that resemble autism and intellectual disability. Furthermore, these symptoms are likely to be due to neocortical dysgenesis that was caused by an increased number of projection neurons in specific layers of the neocortex.
DOI: 10.6084/m9.figshare.26893624.v1
title: Tiller counts - 2020

description: Sampling was conducted in Kematen in Tirol, Austria, where spring barley (Hordeum vulgare L.) was grown in six fields that have had organic management for the past ten years, three in 2020 and 2021, respectively. Each field was split in half, one side being fertilized with manure and the other remaining unfertilized, as a negative control. The manure treatment was independently applied by each field’s respective owner, at a standard rate of 1.5 metric tons (1 500kg) per hectare, using manure spreaders, after tilling and pressing the soil. Four 5x5m plots per treatment were delimited, to carry out all sampling. These plots had no barriers or fences surrounding them that would impede or limit movement between the inside of the plots and the rest of the field area. Additionally, the plots were at least 5m from the field edge, to avoid edge effects. They were at least 10m way from each other along the field’s width, and between 15 to 20m along the length of the field. To avoid any spillover of treatment effects, plots were set at least 25m away from the border between the two treatments within the same field.Sampling was conducted every two weeks, with one week of sampling and one of rest. The sampling period started on the 21st of April and ended on the 14th of July in 2020, while it started on the 3rd of May and ended on the 16th of July in 2021, to encompass almost the entire crop season. This resulted in seven sampling time points for the first year and six for the second.<br>Transects were carried out along the outside border of the plots (5m), to avoid trampling on the inside, collecting 30 individual barley plant tillers to count the number of aphids per tiller.
DOI: 10.6084/m9.figshare.24085485.v1
title: <b>How does FinTech affect growth, poverty, and inequality?</b><b> A </b><b>dynamic panel threshold analysis </b><b>for African countries</b>

description: The dataset is used to examine the nonlinear and threshold effects of FinTech on growth, inequality and poverty in the panel of African Countries.
DOI: 10.6084/m9.figshare.5128447.v1
title: Supplementary Material for: Inflammation-Induced Expression of the Alarmin Interleukin 33 Can Be Suppressed by Galacto-Oligosaccharides

description: <b><i>Background:</i></b> The alarmin interleukin 33 (IL-33) and its receptor ST2 play an important role in mucosal barrier tissues, and seem to be crucial for Th2-cell mediated host defense. Galacto-oligosaccharides (GOS), used in infant formulas, exhibit gut and immune modulatory effects. To enhance our understanding of the immunomodulatory capacity of GOS, this study investigated the impact of dietary GOS intervention on IL-33 and ST2 expression related to intestinal barrier dysfunction and asthma. <b><i>Methods:</i></b> B6C3F<sub>1</sub> and BALB/c mice were fed a control diet with or without 1% GOS. To simulate intestinal barrier dysfunction, B6C3F<sub>1</sub> mice received a gavage with the mycotoxin deoxynivalenol (DON). To mimic asthma-like inflammatory airway responses, BALB/c mice were sensitized on day 0 and challenged on days 7-11 with house-dust mite (HDM) allergen. Samples from the intestines and lungs were collected for IL-33 and ST2 analysis by qRT-PCR, immunoblotting and immunohistochemistry. <b><i>Results:</i></b> Dietary GOS counteracted the DON-induced IL-33 mRNA expression and changed the IL-33 distribution pattern in the mouse small intestine. The IL-33 mRNA expression was positively correlated to the intestinal permeability. A strong positive correlation was also observed between IL-33 mRNA expression in the lung and the number of bronchoalveolar fluid cells. Reduced levels of IL-33 protein, altered IL-33 distribution and reduced ST2 mRNA expression were observed in the lungs of HDM-allergic mice after GOS intervention. <b><i>Conclusions:</i></b> Dietary GOS mitigated IL-33 at the mucosal surfaces in a murine model for intestinal barrier dysfunction and HDM-induced asthma. This promising effect may open up new avenues to use GOS not only as a prebiotic in infant nutrition, but also as a functional ingredient that targets inflammatory processes and allergies associated with IL-33 expression.
DOI: 10.6084/m9.figshare.21265968.v1
title: Supplemental excel file FPKM

description: FPKM dataset
DOI: 10.6084/m9.figshare.3526529.v1
title: Appendix B. A figure and table showing spatiotemporal variation in survival.

description: A figure and table showing spatiotemporal variation in survival.
DOI: 10.6084/m9.figshare.13048064.v1
title: data_Camenzind et al_Ecology Letters.xlsx

description: Data from: Soil fungal mycelia have unexpectedly flexible C:N and C:P ratios
DOI: 10.6084/m9.figshare.11356592.v1
title: FACS cells used in the study

description: FACS cells of TMS
DOI: 10.6084/m9.figshare.24784224.v1
title: Data of “Carbon emissions and priming effects derived from crop residues and their responses to nitrogen inputs”

description: The generality, driving factors, and responses to nitrogen (N) inputs of carbon emissions and priming effects derived from crop residues were investigated in this study.
DOI: 10.6084/m9.figshare.4654522.v2
title: Teaching and Learning in Irish Education: A Roadmap for Enhancement in a Digital World 2015-2017

description: One of the key goals of the National Forum is, via wide consultation, to create a digital roadmap to help to guide institutions and organisations in the development of local and national digital strategies and to ensure alignment, coherence and a sense of common endeavour at a sectoral level.This document is designed to inform and guide senior managers, heads of department, schools or faculties and leaders within the higher education sector. It focuses also on systems-level higher education organisations, as well as representative organisations within the sector which together must take the lead in building digital capacity to enhance teaching and learning across the sector. The roadmap identifies the key priorities for change and provides an informed framework for supporting organisations in addressing these priorities.
DOI: 10.6084/m9.figshare.7531433.v1
title: Hybrid Water Heating System Design Tool

description: An MS Excel-based calculation tool to aid with the design of hybrid water heating systems utilizing solar flat-plate collectors.<br>
DOI: 10.6084/m9.figshare.27011410.v1
title: Eurymelinae Fungi ITS

description: Fungi raw sequences from various insect species of the Eurymelinae subfamily, ITS amplicons, Illumina NovaSeq 6000
DOI: 10.6084/m9.figshare.7804094.v1
title: Review metadata

description: Table with metadata from fifty systematic reviews.
DOI: 10.6084/m9.figshare.11369103.v1
title: Polygenic Risk Scores (PRSs) for cardiometabolic diseases used to identify associated plasma protein changes

description: Polygenic risk scores (PRS) for:<br><br>- Atrial Fibrillation- Chronic Kidney Disease (CKD)<br>- Type 2 Diabetes (T2D)<br>- Stroke (any type)<br><br>These scores were used to test associations between polygenic risk of these diseases and levels of 3,442 plasma proteins in 3,175 healthy individuals from the INTERVAL blood donor cohort.<br><br>Each PRS file contains a set of 1.96 - 2.21 million SNPs, their genomic location (hg19/GRCh37 coordinates), and weights (effect sizes from GWAS).<br><br>
DOI: 10.6084/m9.figshare.16850410.v1
title: ecoli_avg_fpkm

description: average FPKMs for each gene and each day/timepoint
DOI: 10.6084/m9.figshare.3827124.v1
title: Datasets

description: Dataset used for training and testing
DOI: 10.6084/m9.figshare.25314403.v3
title: <b>Supplementary Data for Ebullition dominates methane emissions in stratified coastal waters</b>

description: <b><i>Data S1 – Water column and porewater data</i></b>Complete overview of the physical and chemical water column and porewater parameters.<b><i>Data S2 – Bioinformatics</i></b>Details of the RNA sequencing data obtained from the sediment samples, including sequencing facility identifiers (fastq file names), sample names, and total number of sequences acquired during the bioinformatic analyses.<b><i>Data S3 – Prokaryotic community</i></b>Kraken2+Bracken2 classifications of the sediment RNA-seq extracted 16S rRNA sequences. The table shows the read counts for each classification.<b><i>Data S4 – KEGG annotations of RNA data</i></b>DIAMOND+MEGAN KEGG classifications of the sediment non-rRNA reads. The table shows the number of annotated read counts per KEGG KO.<b><i>Data S5 – ANOVA tests</i></b>Results from One-Way ANOVA and Posthoc Tukey tests of dominant archaeal groups (based in the RNA-seq Kraken2+bracken2 classifications) of the sediment samples.<b><i>Data S6 – edgeR analysis</i></b>Results obtained from the differential expression edgeR analysis of KEGG KOs, classified within the methane metabolism pathway in the sediment RNA-seq data. Significant differences are indicated by false discovery rate (FDR) values below 0.05.<b><i>Data S7 – Metagenome functional gene classifications</i></b>Results from the DNA metagenome functional gene analysis of filtered water samples from station B. The data shows UniProtKB-SwissProt protein classifications, gene names, and normalized number of mapped counts (GeTMM-values).
DOI: 10.15468/dl.yxy7tc
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Onchidella celtica (Audouin & Milne-Edwards, 1832)"
 ]
}

 The dataset includes 17 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009629-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.23748870.v2
title: RPB Data

description: Data
DOI: 10.15468/dl.xyhvzz
title: Occurrence Download

description: A dataset containing 185 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((38.79432 22.98221,38.80452 22.89594,38.91433 22.79877,39.00486 22.87116,38.85739 23.02063,38.79432 22.98221))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 185 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009628-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25943407.v1
title: Table_S2.rar from Terminal regions of a protein are a hotspot for low complexity regions (LCRs) and selection

description: Table S2
DOI: 10.6084/m9.figshare.4038447.v1
title: GameBus Pilot Studies: Internal Consistency Reliability - Chronbach's Alpha

description: Internal consistency reliability estimates (Cronbach’s coefficient alpha) for the eight SF-36v2 scales for pre- and post-test of both pilot locations.Most health dimension scales exceed the recommended 0.70, while others score excellent with close to or over 0.90.<br>** However, we do have to mention that two scales - BP and SF - exist of two items in SF36v2 that measure said constructs and do not provide a proper alpha value for the post-tests of Trial A and Trial B respectively . For these, a negative alpha is determined. Although theoretically, this should not be possible, we are sure that all (if needed) items are re-coded in SPSS & the 'QualityMetric Health Outcomes Scoring Software 4.5’ software package and no other issues exist, before actually calculating the alpha values. This has also been confirmed by the SF-36 Guide Book, section 2.3: p.11 (Zee & Sanderman, 2012). **
DOI: 10.6084/m9.figshare.20406615.v1
title: Tumor Volume U87MG tumor.pzfx

description: Tumor volume of U87MG tumors ipsi- and contralateral after viral injection.
DOI: 10.6084/m9.figshare.4483445.v1
title: Supplementary Material for: A Current Estimation of the Early Risk of Stroke after Transient Ischemic Attack: A Systematic Review and Meta-Analysis of Recent Intervention Studies

description: <strong><em>Objective:</em></strong> Recent studies have demonstrated that there is a decrease in the risk of subsequent stroke after transient ischemic attack (TIA) when urgent care (UC) is administered. However, no meta-analysis has been developed with contemporaneous TIA studies. We perform a systematic review and a meta-analysis to establish the risk of early stroke recurrence (SR) considering data from studies that offered UC to TIA patients. <b><i>Methods:</i></b> We searched for studies, without language restriction, from January 2007 to January 2015 according to PRISMA guidelines. We included studies with TIA patients who underwent UC and reported the proportion of SR at 90 days. We excluded studies that were centered on less than 100 patients and cohorts including both stroke and TIA, if stroke risk after TIA was not described. For its relevance, we included the TIAregistry.org study published in 2016. We performed both fixed and random effects meta-analyses to determine SR and assess sources of heterogeneity. <b><i>Results:</i></b> From 4,103 identified citations, we selected 15 papers that included 14,889 patients. There was great variation in terms of the number of patients included in each study, ranging from 115 to 4,160. Seven studies were TIA clinic based. The mean age and the percentage of men were similar among studies, ranging from 62.4 to 73.1 years and 45.1-62%, respectively. The reported risk of stroke ranged from 0 to 1.46% 2 days after TIA (9 studies included), 0-2.55% 7 days after TIA (11 studies included), 1.91-2.85% 30 days after TIA (4 studies included), and 0.62-4.76% 90 days after TIA (all studies included). The pooled stroke risk was 3.42% (95% CI 3.14-3.74) at 90 days, 2.78% (95% CI 2.47-3.12) at 30 days, 2.06% (95% CI 1.83-2.33) at 7 days and 1.36% (95% CI 1.15-1.59) at 2 days. Although we did not find statistically significant heterogeneity in SR among studies, those with a higher proportion of patients with motor weakness had a significantly higher risk of SR. No statistically significant association was observed between TIA clinic management and SR. <b><i>Conclusion:</i></b> The pooled early SR is lower than in previous meta-analyses and homogeneous for all studies with an urgent assessment and management strategy regardless of vascular risk factors and clinical characteristics. Therefore, the best setting for TIA management can be individualized for each center.
DOI: 10.6084/m9.figshare.12126960.v1
title: Data female BCI.xlsx

description: Field study of loggerhead turtles females nesting in the beaches of Boa VIsta Island (Cabo Verde) during four years.Body mass and condition index.<br>
DOI: 10.6084/m9.figshare.4788979.v2
title: Open access in global health research 2010–2014

description: This dataset contains a set of 3,366 research articles indexed in PubMed under the Medical Heading Subject Heading “Global Health” published between 2010 and 2014. For each of these papers the access type  was determined on the paper (i.e., gold OA, delayed OA, green OA, hybrid, other free access, toll access) as well as the journal level (gold OA, delayed OA, hybrid, subscription). Article processing charges were identified for gold and hybrid papers to estimate the cost of OA and the fees obtained by each publisher. For a subset of 2,655 publications indexed in the Web of Science (WoS), citations were analyzed per access type and country of citing authors, classified by the World Bank Atlas (WBA) country group.
DOI: 10.6084/m9.figshare.19499384.v1
title: patches and local annotations, slide 013, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.7361270.v2
title: 300 Random Asian Faces

description: Three-Hundred Random Asian Faces. LAST UPDATE: November 2018.DongWon Oh (New York University)Shuo Wang (West Virginia University)Alexander Todorov (Princeton University).<br>These 300 images are "twins" of 300 Caucasian faces that were randomly generated using the Facegen Modeller program (http://facegen.com) Version 3.1. The exact procedures are described in Oosterhof and Todorov 2008 (visit for details: http://tlab.princeton.edu/databases/randomfaces/). In the "300 Random Asian Faces", the FaceGen parameter coordinates of the 300 random Caucasian FaceGen faces are shifted so that the coordinates of the face images center around the average coordinates of the East Asian face in the FaceGen model, which were calculated from the actaual East Asian faces, which were measured via 3d laser scanning. This shifting procedure essentially makes the faces on average appear more East Asian.<br>This face image set can be used for example when building a data-driven face evaluation model of Asian faces (e.g., a face model of trustworthiness judgement). See Oosterhof & Todorov (2008) and Todorov & Oosterhof (2011) for details.<br>If you use any of the images from the set, cite the following article:<br>Oosterhof, N. N., & Todorov, A. (2008). The functional basis of face evaluation. Proceedings of the National Academy of Sciences of the USA, 105(32), 11087–11092. http://doi.org/10.1073/pnas.0805664105
DOI: 10.6084/m9.figshare.4779529.v1
title: data_extraction_rest_alignment.xlsx

description: Full list of primary studies and data extraction of the mapping study What Do We Know about Alignment of Requirements Engineering and Software Testing?<br>
DOI: 10.6084/m9.figshare.28438880.v1
title: raisd-ai_evaluation_dataset_low_intensity_recombination_hotspot_merge_1K

description: Dataset of low intensity recombination hotspot (500 simulations) merged with a mild bottleneck (500 simulations) used for the evaluation of RAiSD-AI software.The commands to generate recombination hotspot MS files are:train/neutral.ms: ./msHOT/msHOT 128 500 -t 2000 -r 2000 2000 -eN .10000000000000000000 0.5 -eN .10040000000000000000 1 -v 1 950 1050 224911 5763 23421train/selsweep.ms: command: ./../mbs/mbs 128 -t 0.02 -r 0.02 -s 100000 50000 -f 1 500 ./../mbsFiles/traj -h ./../mbsFiles/rechot_47500_52500_2.txttest/neutral.ms: ./msHOT/msHOT 128 500 -t 2000 -r 2000 2000 -eN .10000000000000000000 0.5 -eN .10040000000000000000 1 -v 1 950 1050 247112 3587 13815test/selsweep.ms: command: ./mbs/mbs 128 -t 0.02 -r 0.02 -s 100000 50000 -f 1 500 ./mbsFiles/traj -h ./mbsFiles/rechot_47500_52500_2.txtThe commands to generate mild bottleneck MS files are:train/neutral.ms: ./msdir/ms 128 500 -t 2000 -r 2000 2000 -eN .10000000000000000000 0.5 -eN .10040000000000000000 17316 60926 22395train/selsweep.ms: ./msseldir/mssel 128 500 0 128 ./trajectory_files/trajectory1.txt 1000 -t 2000 -r 2000 2000 -eN .10000000000000000000 0.5 -eN .10040000000000000000 17316 60926 22395test/neutral.ms: ./msdir/ms 128 500 -t 2000 -r 2000 2000 -eN .10000000000000000000 0.5 -eN .10040000000000000000 13380 19597 12002test/selsweep.ms: ./msseldir/mssel 128 500 0 128 ./trajectory_files/trajectory1.txt 1000 -t 2000 -r 2000 2000 -eN .10000000000000000000 0.5 -eN .10040000000000000000 13380 19597 12002<br>