cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1285/i20356609v13i3p1390
title: Urban Commons from an Anti-Capitalist Approach

description: Many of the contemporary debates on urban commons lack an anti-capitalist approach. In addition, a number of misunderstandings regarding the common wealth, the city, the state, and the public sphere do not help to clarify the meaning of the commons. As a response to these problems, I first devise two useful concepts that stem from Marx's original insights: primary and extended commons. Secondly, I critically examine the institutionalist views on urban commons due to their limitations in advancing anti-capitalist perspectives while also identifying some problems with the Marxist accounts. The different expressions of cooperative housing and squatting serve to illustrate how anti-capitalist urban commons are actually highly developed, despite significant restrictions that are also examined here. Hence, I argue that both the analysis and politics of urban commoning should focus on the joint contentious, cooperative, and democratic practices of the global working class when they deal with essential reproductive work and means of production which are widely independent from state rule and exploitative capitalist relations.
DOI: 10.14291/tccon.ggg2020.karlsruhe01.r1
title: TCCON data from Karlsruhe (DE), Release GGG2020.R1

description: The Total Carbon Column Observing Network (TCCON) is
    a network of ground-based Fourier Transform Spectrometers that record direct
    solar absorption spectra of the atmosphere in the near-infrared. From these
    spectra, accurate and precise column-averaged abundances of atmospheric
    constituents including CO2, CH4, N2O, HF, CO, H2O, and HDO, are retrieved. This
    is the GGG2020 data release of observations from the TCCON station at
    Karlsruhe, Germany
DOI: 10.14459/2024mp1747486
title: Supplementary Crystal Shape Models to: Growth of broken crystals tracked in 4D using X-Ray computed tomography and its influence on impurity incorporation

description: Two potassium aluminum sulfate crystal fragments were grown at constant supersaturation (0.0174) and temperature (20dC) and imaged using micro-computed tomography at a voxel spacing (resolution) of 2 um/voxel at intermediate times. The files provide STL mesh data of the crystals at corresponding times.
DOI: 10.15468/i0avrm
title: Global Register of Introduced and Invasive Species - Brazil

description: The Global Register of Introduced and Invasive Species (GRIIS) presents validated and verified national checklists of introduced (alien) and invasive alien species at the country, territory, and associated island level. Checklists are living entities, especially for biological invasions given the growing nature of the problem. GRIIS checklists are based on a published methodology and supported by the Integrated Publishing Tool that jointly enable ongoing improvements and updates to expand their taxonomic coverage and completeness. Phase 1 of the project focused on developing validated and verified checklists of countries that are Party to the Convention on Biological Diversity (CBD). Phase 2 aimed to achieve global coverage including non-party countries and all overseas territories of countries, e.g. those of the Netherlands, France, and the United Kingdom. All kingdoms of organisms occurring in all environments and systems are covered. Checklists are reviewed and verified by networks of country or species experts. Verified checklists/ species records, as well as those under review, are presented on the online GRIIS website (www.griis.org) in addition to being published through the GBIF Integrated Publishing Tool.
DOI: 10.17909/j6kp-2r12
title: Data from MIRI MRS Observations of Beta Pictoris II. The Spectroscopic Case for a Recent, Giant Collision

description: The data in this DOI is calibration level 3. We did not use this data directly in this paper. For the JWST MIRI MRS, we used the calibration level 1 (uncal) products and ran the pipeline ourselves as described in the paper. For the Spitzer IRS data, we extracted spectra from the calibration level 2 products using Advanced Optimal Extraction as described in Lu et al. (2022).
DOI: 10.21227/6jr9-5235
title: Battery and Heating Data in Real Driving Cycles

description: High-voltage batteries in battery electric vehicles face significant load fluctuations due to driving behavior. High accelerations cause high discharge currents, while regenerative braking leads to charging currents. This dynamic performance of the powertrain is contrasted by the almost constant load of the auxiliary consumers. The highest auxiliary consumption is generated by the heating and air conditioning system, which decreases the vehicles range significantly. This data set contains real driving data and simulated data. The real driving was recorded with a BMW i3 (60 Ah) and serves for the model development and validation of a full vehicle model consisting of the powertrain and the heating circuit. Each ride contains: Environmental data (temperature, elevation, etc.)Vehicle data (speed, throttle, etc.)Battery data (voltage, current, temperature, SoC)Heating circuit data (indoor temperature, heating power, etc.) Using the validated model, strategies for electrothermal recuperation, which describes the direct use of power in regenerative braking operations for heating, were implemented and the range advantage was determined. This approach was further developed to a peak power shaving. Depending on the drive power, the heating power is controlled. The simulation data* show this approach and the resulting improvement in range and battery life. *The corresponding paper was submitted.
DOI: 10.21227/qacj-3x32
title:  ACI IoT Network Traffic Dataset 2023

description: The Army Cyber Institute (ACI) Internet of Things (IoT) Network Traffic Dataset 2023 is a novel dataset tailored for machine learning (ML) applications in the realm of IoT network security. This effort focuses on delivering a distinctive and realistic dataset designed to train and evaluate ML models for IoT network environments. By addressing a gap in existing resources, this dataset aims to propel advancements in ML-based solutions, ultimately fortifying the security of IoT operations.
DOI: 10.26022/ieda/111854
title: Geochemistry and geochronology of Cenozoic plutons of Viti Levu, Fiji

description: This dataset contains whole rock analyses of samples from 10 Cenozoic plutons on Viti Levu, Fiji. It compiles analyses from nearly 50 years of graduate research projects investigating the origins of continental crust-like plutons in an island arc setting. Methods for characterizing the bulk rock compositions primarily include XRF and ICP-MS, and, for a few samples, Emission, Gamma, and Spark Source spectroscopy. Radiogenic isotopes of Sr, Nd, Pb and Hf are also present for a subset of these samples, analyzed by MC-ICPMS and TIMS. This contribution also provides new U/Pb ratios and ages, trace element compositions, and Hf and O isotope ratios for zircons recovered from 13 of the pluton samples, plus 2 detrital sand samples. U/Pb ratios were measured by both SHRIMP and LA-ICPMS, at three different laboratories – Australian National University (ANU), National Institute of Polar Research (NIPR), and University of California, Santa Barbara (UCSB). The NIPR and UCSB measurements are of grain interiors, whereas the ones from ANU are for grain surfaces. Hafnium isotopes were measured by LA-MC-ICPMS at ANU, UCSB, and Japan Agency for Marine-Earth Science and Technology (JAMSTEC) labs, trace element compositions were measured by LA-ICPMS at ANU and UCSB, and oxygen isotopes by SHRIMP at ANU. Finally, the dataset includes analyses of 16 volcanic rock samples of the Miocene Wainimala Group into which the plutons intrude and from which some of them are derived. Previously published data for these and related samples are in Gill (1987).. All of these data are referred to, and plotted in figures, by Marien et al. (2021).
description: Chris S. Marien, Elizabeth K. Drewes-Todd, Allen Stork, Erin Todd, James B. Gill, J. Elis Hoffmann, Kenichiro Tani, Charlotte M. Allen, Carsten Münker, (Submitted), Juvenile continental crust evolution in an oceanic arc setting: petrogenesis of Cenozoic Yavuna and Colo plutons of Viti Levu, Fiji, Geochimica et Cosmochimica Acta
DOI: 10.5281/zenodo.10226224
title: CoUDlabs_WP8_T812_Deltares_001. Measuring sediment deposits in gully pots from temperature signals

description: This dataset contains the results of the experimental campaign and how data were collected on the the Co-UDlabs Work Package 8 (Joint Research Activity 3): Improving resilience and sustainability in urban drainage solutions; Task 8.1: Development of consensus on measurement of hydraulic and water quality performance of urban drainage technologies; Subtask 8.1.2: Development of scalable measurement protocols to assess the pollutant retention and release potential of urban drainage structures. 
The experimental campaign was funded under the European Union's Horizon 2020 research and innovation programme under grant agreement No 101008626.
The experiments were designed to further develop an innovative methodology for measuring sediment bed deposits in UDS based on temperature data analysis (Anta et al., 2022; Regueiro-Picallo et al., 2023). Particularly, the aim of these campaigns was to test the application of this methodology in gully pots for measuring sediment build-up. For this purpose, we focused on understanding the heat transfer processes in gully pots in relation to the volume of bed deposits. Thus, the aim of this research is to estimate or at least obtain proof for the presence/absence of sediments by analyzing the differences between the temperature time series measured in the water phase and at the bottom of bed deposits. Results from the experimental campaigns will help to develop new technologies to estimate accumulation in urban drainage infrastructures.
The data are described so that others can use and reproduce.
DOI: 10.5281/zenodo.12736824
title: DeepRVAT gene-trait association testing results on the 470k UK Biobank WES dataset

description: Association testing results from DeepRVAT on the 470k UK Biobank WES dataset, covering all tested genes and traits. Tests were performed on the full dataset and on Caucasian individuals ("cohort" column). "Significant" indicates significance after multiple testing correction (FWER < 5%).
DOI: 10.5281/zenodo.13120683
title: Jet stream controls on driven European climate extremes and agricultural agriculture

description: The code is used to analyze data and produce the main figures for the manuscript (Xu et al., Jet stream controls on  European climate and agriculture since 1300 CE. Nature, 2024, https://doi.org/10.1038/s41586-024-07985-x). We used three temperature-sensitive tree-ring maximum chronologies from Europe to reconstruct the North-Atlantic-Europe Jet Stream Latitude (EU JSL). The EU JSL can capture the variability of dipolar patterns in temperature and precipitation extremes between Southern Europe and Northern Europe in summer (July-August). We extended the EU JSL to 1300 CE based on a multiple linear regression transfer function, which can explain the total variance of about 38.5% over the instrumental period (1945-2005, from NCEP reanalysis dataset V1.0). We then explore the relationships between EU JSL and temperature and precipitation over a long-term scale. We also explored the relationships between EU JSL extremes, crop failure events, and some social events over the past seven centuries. We found that the climate and societal extremes have been influenced by a summertime climatic dipole between northwestern and southeastern Europe, driven by EU JSL. Using the reconstruction, we explore relationships between EU JSL and climate and societal extremes using independent historical documentary datasets. We highlight the imprint of the EU JSL climate dipole on not only historical climate extremes, but also on the dipole's biophysical (e.g., grape harvest, wildfire), economic (e.g., wine quality and grain price), and even demographic (e.g., mortality and epidemics) impacts.

The code is for the data analysis and visualization. We used R 4.2 version in the Windows 11 platform. Before re-running the code, please read the following instructions:

1. Download all the input data and the R folder (all of the code). Please put the input data into a folder named input. We uploaded the temp and precip reconstruction data for the European domain.2. Create a similar structure for the folders.3. Before running the code, please unzip the crop data in the folder "./input/crop/*.zip", two large crop NetCDF fromat dataset.4. Before running the main code "test all.R", please set you-work-path and run "setwd ("YOURPATH")" command line. 5. Some results or data in the output folder can be produced when run the code, you can also directly input them from the input folder in the next step to save time.6. For the visualization, some of the arrangements are finished in Adobe Illustrator or Adobe Photoshop.7. This is the main code for the manuscript, we would be improved or modified during the peer review.8. If you have any questions or warnings during the re-run, please get in touch with me (guobaoxu@nwu.edu.cn; xgb234@lzb.ac.cn).

If you have any suggestions or comments, please also let me know.

Best wishes,Guobao
DOI: 10.5281/zenodo.4072908
title: Population-scale single-cell RNA-sequencing of iPS cells differentiating towards dopaminergic neurons

description: This upload contains data objects associated with our paper "Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation" (https://www.nature.com/articles/s41588-021-00801-6).


In particular, available here are:


1) four objects containing scRNA-seq counts and associated metadata for:


- three compressed files for all cells from each of day 11, day 30 and day 52, respectively (i.e. day.h5, day30.h5 and day52.h5) - these contain both normalised and raw count matrices,


- a subsample of 20% cells across all time points (all_timepoints_subsampled.h5) - normalised counts only;


2) one compressed folder containing eQTL summary statistics for each of the 14 contexts (cell type + condition) analysed in the paper.


3) two compressed files containing summary statistics for colocalisation analyses between 25 neurological traits and our 14 eQTL maps (neuroseq) and 49 eQTL maps from GTEx (gtex), as well as a text file describing the GWAS trait ids used. 


The corresponding raw scRNA-seq data are accessible in the EGA for managed access lines (study number: EGAS00001002885, dataset: EGAD00001006157) and ENA for open access ones (ERP121676). The file files_to_samples.txt provides a map between the files on EGA/ENA and the sample IDs in the h5 objects.
DOI: 10.5281/zenodo.6066480
title: United Atom Parameters for United Atom Multiscale Modelling Of Bio-Nano Interactions Of Zero-Valent Copper Nanoparticles

description: Short-range surface adsorption potentials of carbohydrates, lipid fragments, and amino acid side chains in tabulated form. Calculated via AWT-MetaD (Gromacs/Plumed). Force Fields: INTERFACE/CHARMM36. Material: zero-valent copper
DOI: 10.5281/zenodo.8429303
title: Data for "A realistic benchmark for differential abundance testing and confounder adjustment in human microbiome studies"

description: Data for the manuscript: A realistic benchmark for differential abundance testing and confounder adjustment in human microbiome studies (see also https://doi.org/10.1101/2022.05.09.491139)
DOI: 10.5439/1256461
title: ARM: 1290-MHz Radar Wind Profiler, precipitation moments data

description: 1290-MHz Radar Wind Profiler, precipitation moments data
DOI: 10.6084/m9.figshare.25111214
title: Reserves_2021

description: This file contains reserve data from USGS and BGS for the year 2021 for the 48 resources considered in ESSENZ and ESSENZ+.
DOI: 10.6084/m9.figshare.26892994
title: Supplementary Material for: Long-term effects and impressions of minimal footwear in older adults

description: Introduction: Foot pathologies can lead to difficulty walking and falls in older adults. Intrinsic foot muscles contribute to the structural support and alignment of the foot and provide somatosensory input from the ground. Minimally cushioned footwear may naturally strengthen intrinsic foot muscles and enhance sensory input to the foot; however, these effects are largely unknown in older adults. Further, there is little evidence regarding the prescription of minimal footwear and the perceptions of this footwear by older adults.
Methods: Twenty-four adults age &gt; 65 volunteered to use minimal footwear for prescribed times during daily activities for 16 weeks. The cross-sectional area (CSA) of 5 intrinsic foot muscles was measured using ultrasound imaging at baseline, 8-weeks, and 16-weeks. Semi-structured interviews were recorded regarding participants’ impressions of the footwear, the progressive wear schedule, the footwear’s effects on orthopedic-related pain, balance, and foot awareness/sensation. 
Results: Across the cohort there was no significant difference in CSA of the 5 muscles after 16 weeks of minimal footwear use. Thirteen participants had clinically meaningful increased CSA of the abductor hallucis muscle (Abh). These positive responders had no significant differences in age, grip strength, foot structure, or fall risk scores compared to participants with little to no CSA change. Interview results indicated a generally positive experience with minimal footwear for 68.1% of the cohort. A large percentage of the cohort reported no difficulty with the progressive wear schedule (77.2%), no aggravation of pre-existing conditions and no new pain (77.2%), improved balance, (63.6%), and improved foot awareness/sensation (72.7%) with minimal footwear use. The progressive wear schedule was perceived as inconvenient by some in the first few weeks (22.8%), but resulted in mild to no adverse effects when followed as prescribed. 
Conclusion: Sixteen weeks of progressive minimal footwear use in older adults did not lead to changes in intrinsic foot muscle CSA; however, half of the cohort had clinically meaningful increased CSA in the Abh muscle. It is unclear what individual qualities were associated with this positive response. Older adults reported generally positive experiences with minimal footwear with self-reported improvements in balance and foot awareness/sensation. The wear schedule may have been too conservative or not long enough to produce foot muscle hypertrophy, but subjective reports suggest beneficial neuromuscular adaptations and sensory changes occurred. Future research may need a greater length of time and larger samples to further determine the effects of long-term minimal footwear use in older adults.
DOI: 10.6084/m9.figshare.27109480
title: Supplementary Material for: Novel method to monitor arteriovenous fistula maturation: impact on catheter residence time.

description: Introduction
Arterio-venous fistula (AVF) maturation assessment is essential to reduce venous catheter residence. We introduced central venous oxygen saturation (ScvO2) and estimated upper-body blood flow (eUBBF) to monitor newly created fistula maturation and recorded catheter time in patients with and without ScvO2-based fistula maturation.
Methods
From 2017 to 2019 we conducted a multicenter quality improvement project (QIP) in hemodialysis patients with the explicit goal to shorten catheter residence time post-AVF creation through ScvO2-based maturation monitoring. In patients with a catheter as vascular access, we tracked ScvO2 and eUBBF pre- and post-AVF creation. The primary outcome was catheter residence time post-AVF creation. We compared catheter residence time post-AVF creation between QIP patients and controls. One control group comprised concurrent patients, a second control group comprised historic controls (2014-2016). We conducted Kaplan Meier analysis and constructed a Cox proportional hazards model with variables adjustment to assess time-to-catheter removal. 
Results
The QIP group comprised 44 patients (59±17 years), the concurrent control group 48 patients (59±16 years), the historic control group 57 patients (58±15 years). Six months post-AVF creation, the fraction of non-censored patients with catheter in place was 21% in the QIP cohort, 67% in the concurrent control group, and 68% in the historic control group. In unadjusted and adjusted analysis, catheter residence time post-fistula creation was shorter in QIP patients compared to either control groups (P&lt;0.001). 
Conclusion
ScvO2-based assessment of fistula maturation is associated with shorter catheter residence post-AVF creation.
DOI: 10.7931/p14k9z
title: Checklist of the New Zealand Flora — Hornworts, Liverworts and Mosses (2017).
DOI: 10.1285/i22390359v24p37
title: Communicative 'success', creativity and the need for de-mystifying L1 use: Some thoughts on ELF and ELT

description: As has been extensively exemplified in the ELF literature, users of English as a lingua franca are capable of using language to communicate in contextually appropriate ways even though in so doing they may not conform to the norms of Standard English or the usage of native speakers, which are generally taken to provide the benchmarks of competence in the language. This raises the question of what kind of construct competence is and how far it accounts for the ability to communicate. And if 'incompetent' users manage to be capable communicators, then what is the nature of this capability? If it refers to some kind of knowledge other than competence, what kind is it, and how is this knowledge acted upon in the actual pragmatic process of communication? Addressing these questions leads to the recognition that communication in general is achieved by the exercise of a general lingual capability that, unlike the concept of competence, is not a matter of conformity to the actual encodings of any particular language but the exploitation of the coding potential of virtual language
DOI: 10.15468/dl.qpm7th
title: Occurrence Download

description: A dataset containing 7174 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Urophora cardui (Linnaeus, 1758)"
 ]
}

 The dataset includes 7174 records from 136 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011796-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.24432/c59w2d
title: Contraceptive Method Choice
DOI: 10.25584/ecobee/1854924
title: Ecobee Donate Your Data 1,000 homes in 2017

description: This dataset is a subset of the Ecobee Donate Your Data (DYD) dataset. The Ecobee DYD data comprises user-reported metadata (of home and occupant characteristics), and data collected by Ecobee thermostats (reported in 5-minute intervals). Participant data are pulled from the Ecobee servers, and then anonymized to remove any personally identifiable information. This subset selects 1,000 single family homes in four states - California, Texas, New York, and Illinois, and span the entire year of 2017. In addition to the measurements, a metadata JSON file is included to illustrate the high-level contextual information of the dataset. The dataset can be analyzed to understand how a single-family heating, ventilation, and air-conditioning (HVAC) system operates, occupant behavior, and building thermal dynamics.
DOI: 10.5281/zenodo.12191265
title: Dataset for A thermodynamic criterion for the formation of Circumplanetary disks

description: This repository includes data to reproduce the Fiugres of the manuscript entitled "A thermodynamics criterion for the formation of circumplanetary disks"