cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5638392
title: Multi-Needle Langmuir probe (mNLP) data on the Investigation of Cusp Irregularities (ICI) 4 sounding rocket

description: Documentation for file: ICI4_mNLP_01112021.mat <strong>The mNLP system on ICI-4</strong> The mNLP system on ICI-4 consisted of four cylindrical Langmuir probes with a diameter of 0.51 mm and a length of 25 mm [1,2]. The instruments allowed for current measurements at a sampling rate of 8680.5 Hz. The mNLP data included in the file are 1) the raw currents (‘I_mnlp’) in which spikes have been removed using a median filter over ten data points, and 2) the “filtered currents” (‘I_mnlp_filt’). For the latter, the spin of the payload and the three first harmonics were removed using a band-pass filter [1,2]. Additionally, components with frequencies larger than 1kHz were also removed. <strong>Variables:</strong> Variable name Units Description/Comment time_noNans seconds Time of flight since launch. Alt Km Altitude of the payload. I_mnlp Ampere Currents obtained by the four cylindrical Langmuir probes. The 1<sup>st</sup>-4<sup>th</sup> columns contain the currents obtained by the probes with bias voltages of 3V, 4.5V, 6V, and 7.5 V, respectively. The data was filtered using a median filter over ten data points. I_mnlp_filt Ampere Same as I_mnlp with additional filtering of currents using band-pass filters [1,2]. <strong>Acknowledgement</strong> The mNLP experiment and the ICI-4 campaign were funded through the Research Council of Norway. Thanks to Lasse Clausen, Espen Trondsen, Jøran I. Moen, David Michael Bang-Hauge, Bjørn Lybekk, and the Mechanical Workshop at the University of Oslo, Norway. <br> 1. Bekkeng, T. A., K. S. Jacobsen, J. K. Bekkeng, A. Pedersen, T. Lindem, J.‐P. Lebreton, and J. I. Moen (2010), Design of a multi‐needle Langmuir probe system, Meas. Sci. Technol., 21, 085,903, doi:10.1088/0957‐0233/21/8/085903 2. Jacobsen, K. S., Pedersen, A., Moen, J. I., & Bekkeng, T. A. (2010), A new Langmuir probe concept for rapid sampling of space plasma electron density. Measurement Science and Technology, 21(8), https://doi.org/10.1088/0957‐0233/21/8/085902
description: This work was supported by the Research Council of Norway: Grant, 275653, 230996, 208006
description: {"references": ["Bekkeng, T.\u2009A., K.\u2009S. Jacobsen, J.\u2009K. Bekkeng, A. Pedersen, T. Lindem, J.\u2010P. Lebreton, and J.\u2009I. Moen (2010), Design of a multi\u2010needle Langmuir probe system, Meas. Sci. Technol., 21, 085,903, doi:10.1088/0957\u20100233/21/8/085903", "Jacobsen, K. S., Pedersen, A., Moen, J. I., & Bekkeng, T. A. (2010), A new Langmuir probe concept for rapid sampling of space plasma electron density. Measurement Science and Technology, 21(8), doi:10.1088/0957\u20100233/21/8/085902"]}
DOI: 10.34740/kaggle/dsv/2779469
title: 2021 World Population (updated daily)
DOI: 10.15468/ecckhu
title: New records of soldier flies from Iran with a current checklist and taxonomic notes to some species (Diptera: Stratiomyidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Jentzsch, Matthias, Liebig, Wolf-Harald (2021): New records of soldier flies from Iran with a current checklist and taxonomic notes to some species (Diptera: Stratiomyidae). Zootaxa 5060 (4): 575-581, DOI: https://doi.org/10.11646/zootaxa.5060.4.6
DOI: 10.6084/m9.figshare.16940455
title: Dynamic and elastic stiffness of the semitendinosus muscle after knee joint immobilization in rats.docx

description: We clarified the maximum limit of the semitendinosus muscle length <i>in vivo</i> was equivalent to 110% of slack length, which was taken as the limit of the physiological range. To evaluate mechanical features representing muscle stiffness within and beyond the limits of physiological muscle length, quadratic functions were fitted separately to the dynamic and elastic tension-strain curves at strains of 2.5%–10% <i>Ls</i> as the small strain and at strains of 7.5%–20% <i>Ls</i> as the large strain. The stiffness for small strains was then estimated by calculating the tangents at strains of 5% and 7.5% <i>Ls</i> of the quadratic fit to four points (strains of 2.5%, 5%, 7.5%, and 10%<i> Ls</i>), while stiffness for large strains were similarly estimated from the tangents for strains of 10% and 15% <i>Ls</i> of the quadratic fit to four points (strains of 7.5%, 10%, 15%, and 20% <i>Ls</i>).
DOI: 10.6084/m9.figshare.16940455.v1
title: Dynamic and elastic stiffness of the semitendinosus muscle after knee joint immobilization in rats.docx

description: We clarified the maximum limit of the semitendinosus muscle length <i>in vivo</i> was equivalent to 110% of slack length, which was taken as the limit of the physiological range. To evaluate mechanical features representing muscle stiffness within and beyond the limits of physiological muscle length, quadratic functions were fitted separately to the dynamic and elastic tension-strain curves at strains of 2.5%–10% <i>Ls</i> as the small strain and at strains of 7.5%–20% <i>Ls</i> as the large strain. The stiffness for small strains was then estimated by calculating the tangents at strains of 5% and 7.5% <i>Ls</i> of the quadratic fit to four points (strains of 2.5%, 5%, 7.5%, and 10%<i> Ls</i>), while stiffness for large strains were similarly estimated from the tangents for strains of 10% and 15% <i>Ls</i> of the quadratic fit to four points (strains of 7.5%, 10%, 15%, and 20% <i>Ls</i>).
DOI: 10.6084/m9.figshare.16940520
title: Molecular docking and simulation studies of synthetic protease inhibitors against COVID-19: a computational study

description: COVID-19 is the most recent threat to global health. Many people preferred treatment in case of infection instead of vaccination. The inhibition of viral replication is a good strategy for the treatment of COVID-19 infection. 3CLpro and PLpro are two important viral proteases responsible for proteolysis, infection, and replication of the virus. Therefore, targeting of these two enzymes is an attractive way to deal with COVID-19. The aim of this study was to screen some synthetic protease inhibitors to determine an appropriate hit molecule against COVID-19 using molecular docking and molecular dynamic simulations. The strategy depends on docking existing synthetic compounds mostly HIV protease inhibitors against two COVID-19 proteases to identify promising drugs for the treatment of COVID-19. We used protein data bank to obtain the X-ray crystal structure of the most important COVID-19 proteases 3CL pro (PDB ID: 6M2N) and PL pro (PDB ID: 6WX4). In this conceptual context, an attempt has been made to suggest an in silico computational relationship between 50 synthetic protease inhibitors and COVID-19 proteases. Out of 50 screened compounds, the best docking scores were found for these five protease inhibitors BDBM7021, BDBM698, BDBM694, BDBM93239, BDBM700. A 100-ns MD simulation was carried out to assess the stability of COVID-19 proteases and inhibitors, revealing an average RMSD value of 0.7 and favorable binding free energy (MM-GBSA) for all complexes confirming their potency as powerful binders in the COVID-19 proteases’ binding pocket. Furthermore, the current results must be confirmed using in-<i>vitro</i> and in-<i>vivo</i> antiviral methods. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.16940520.v1
title: Molecular docking and simulation studies of synthetic protease inhibitors against COVID-19: a computational study

description: COVID-19 is the most recent threat to global health. Many people preferred treatment in case of infection instead of vaccination. The inhibition of viral replication is a good strategy for the treatment of COVID-19 infection. 3CLpro and PLpro are two important viral proteases responsible for proteolysis, infection, and replication of the virus. Therefore, targeting of these two enzymes is an attractive way to deal with COVID-19. The aim of this study was to screen some synthetic protease inhibitors to determine an appropriate hit molecule against COVID-19 using molecular docking and molecular dynamic simulations. The strategy depends on docking existing synthetic compounds mostly HIV protease inhibitors against two COVID-19 proteases to identify promising drugs for the treatment of COVID-19. We used protein data bank to obtain the X-ray crystal structure of the most important COVID-19 proteases 3CL pro (PDB ID: 6M2N) and PL pro (PDB ID: 6WX4). In this conceptual context, an attempt has been made to suggest an in silico computational relationship between 50 synthetic protease inhibitors and COVID-19 proteases. Out of 50 screened compounds, the best docking scores were found for these five protease inhibitors BDBM7021, BDBM698, BDBM694, BDBM93239, BDBM700. A 100-ns MD simulation was carried out to assess the stability of COVID-19 proteases and inhibitors, revealing an average RMSD value of 0.7 and favorable binding free energy (MM-GBSA) for all complexes confirming their potency as powerful binders in the COVID-19 proteases’ binding pocket. Furthermore, the current results must be confirmed using in-<i>vitro</i> and in-<i>vivo</i> antiviral methods. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.15088206
title: Supplementary Tables

description: Table Description S1 Informations regarding the 345 publicly available Pasteurellaceae complete genomes obtained from NCBI database S2 Raw data of Insertion sequences prediction from ISsaga S3 Context genes of Inserton sequences S4 Raw data of prophage-like sequences obtained from PHASTER prediction S5 Raw data of prophage-like sequences obtained from Prophage hunter prediction S6 Identification of complete reported prophages of Pasteurellaceae in the dataset genomes S7 Informations of reported prophages from Pasteurellaceae used in this study S8 Informations of the novel prophages described in this study S9 Raw data of regions with high potential for self-transferability obtained from OriTFinder S10 Informations of reported ICEs from Pasteurellaceae used in this study S11 Informations of the novel ICES described in this study S12 Informations regarding the 162 publicly available Pasteurellaceae plasmids obtained from NCBI database S13 AMR genes found associated with MGEs and chromosomes by prediction using ResFinder and CARD
DOI: 10.6084/m9.figshare.15088206.v2
title: Supplementary Tables

description: Table Description S1 Informations regarding the 345 publicly available Pasteurellaceae complete genomes obtained from NCBI database S2 Raw data of Insertion sequences prediction from ISsaga S3 Context genes of Inserton sequences S4 Raw data of prophage-like sequences obtained from PHASTER prediction S5 Raw data of prophage-like sequences obtained from Prophage hunter prediction S6 Identification of complete reported prophages of Pasteurellaceae in the dataset genomes S7 Informations of reported prophages from Pasteurellaceae used in this study S8 Informations of the novel prophages described in this study S9 Raw data of regions with high potential for self-transferability obtained from OriTFinder S10 Informations of reported ICEs from Pasteurellaceae used in this study S11 Informations of the novel ICES described in this study S12 Informations regarding the 162 publicly available Pasteurellaceae plasmids obtained from NCBI database S13 AMR genes found associated with MGEs and chromosomes by prediction using ResFinder and CARD
DOI: 10.6084/m9.figshare.15088206.v1
title: Supplementary Tables

description: Table Description S1 Informations regarding the 345 publicly available Pasteurellaceae complete genomes obtained from NCBI database S2 Raw data of Insertion sequences prediction from ISsaga S3 Context genes of Inserton sequences S4 Raw data of prophage-like sequences obtained from PHASTER prediction S5 Raw data of prophage-like sequences obtained from Prophage hunter prediction S6 Identification of complete reported prophages of Pasteurellaceae in the dataset genomes S7 Informations of reported prophages from Pasteurellaceae used in this study S8 Informations of the novel prophages described in this study S9 Raw data of regions with high potential for self-transferability obtained from OriTFinder S10 Informations of reported ICEs from Pasteurellaceae used in this study S11 Informations of the novel ICES described in this study S12 Informations regarding the 162 publicly available Pasteurellaceae plasmids obtained from NCBI database S13 AMR genes found associated with MGEs and chromosomes by prediction using ResFinder and CARD
DOI: 10.6084/m9.figshare.16940284.v2
title: QB50 ISS Cubesat Orbits (ECI State vector & Osculating Keplerian Elements)

description: These QB50-ISS Cubesat orbits were generated from TLEs using the UCL Orbit Dynamics Library and the SGP4-propagator tool (Revisiting Spacetrack Report #3, Vallado et al) <br>
DOI: 10.17632/m4tjfjjd83.1
title: Circadian entry of glucose into the arcuate nucleus determines the rhythm in blood glycemia

description: Circulating glucose is maintained within very narrow boundaries with less than 5% variation at a given time of the day. However, over the circadian cycle, glycemia changes with almost 50% difference. How the suprachiasmatic nucleus, the biological clock, maintains these day-night variations with such small variations remains obscure. We show that via vasopressin release at the beginning of the sleep phase, the suprachiasmatic nucleus increases the glucose transporter GLUT1 in tanycytes. Hereby GLUT1 promotes glucose entrance into the arcuate nucleus, adjusting circulating glucose to its lowest level. Conversely, blocking vasopressin activity or the GLUT1 transporter at the daily trough of glycemia, increases circulating glucose to levels usually seen at the peak of the rhythm. Thus, biological clock-controlled mechanisms promoting glucose entry into the arcuate nucleus before sleep sets the circadian low-glucose levels. 
Fasting promotes an increase in arcuate GLUT1 and glucose, followed by lowering circulating glucose levels, supporting the essential role of this mechanism for controlling circulating glucose levels.
DOI: 10.5281/zenodo.5647767
title: Solvent sites detection from molecular dynamics in mixed solvents

description: In this zip file, you will find 3 molecular dynamics (MDs) that were run using the AMBER molecular dynamics package (https://ambermd.org/), and the necessary scripts to obtain the solvent sites. The MDs correspond to the kinase and rubredoxin domains of protein kinase G from Mycobacterium tuberculosis.
description: {"references": ["Arcon, Juan Pablo, et al. \"Molecular dynamics in mixed solvents reveals protein\u2013ligand interactions, improves docking, and allows accurate binding free energy predictions.\"\u00a0Journal of chemical information and modeling\u00a057.4 (2017): 846-863."]}
DOI: 10.5281/zenodo.5647766
title: Solvent sites detection from molecular dynamics in mixed solvents

description: In this zip file, you will find 3 molecular dynamics (MDs) that were run using the AMBER molecular dynamics package (https://ambermd.org/), and the necessary scripts to obtain the solvent sites. The MDs correspond to the kinase and rubredoxin domains of protein kinase G from Mycobacterium tuberculosis.
description: {"references": ["Arcon, Juan Pablo, et al. \"Molecular dynamics in mixed solvents reveals protein\u2013ligand interactions, improves docking, and allows accurate binding free energy predictions.\"\u00a0Journal of chemical information and modeling\u00a057.4 (2017): 846-863."]}
DOI: 10.17632/mysg2t6gbn.1
title: Lagrangian transformation of sweeping jet

description: This dataset contains the original data, the code and the results of the runs.
Raw data (*.dat file): obtained from ANSYS Fluent simulations, converted to ASCII format with appropriate processing.
Code (*.m file): MATLAB program, which needs to be run under the same folder as the *.dat file.
Results (*.dat and *.gif files): the results obtained by running the above code, and the animation files created by Tecplot after plotting.
DOI: 10.15468/dun6gs
title: New taxa in the genus Neolarnaca Gorochov, 2004 (Orthoptera: Gryllacrididae) based on specimens from Yunnan and Guangxi, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Yang, Dongdong, Peng, Xiaoyu, Bian, Xun (2021): New taxa in the genus Neolarnaca Gorochov, 2004 (Orthoptera: Gryllacrididae) based on specimens from Yunnan and Guangxi, China. Zootaxa 5060 (4): 582-588, DOI: https://doi.org/10.11646/zootaxa.5060.4.7
DOI: 10.6084/m9.figshare.16940284.v3
title: QB50 ISS Cubesat Orbits (ECI State vector & Osculating Keplerian Elements)

description: These QB50-ISS Cubesat orbits were generated from TLEs using the UCL Orbit Dynamics Library and the SGP4-propagator tool (Revisiting Spacetrack Report #3, Vallado et al) <br>
DOI: 10.17632/bw2ddm2kfy.1
title: Bifocal emotion regulation through tapping in fear of flying 

description: Dataset contains:


*Folder ‚Behavioral‘
Spreadsheets containing the behavioral data and questionnaire data from the scanning session and the intervention session that went into the group-level statistics reported in the manuscript in *.csv and *.xlsx format.
-------------------- 

*Folder ‚fMRI‘

**Folder ‚First Level‘
Contains 
*.nii files of all n=29 participants for the eight experimental conditions as calculated in a first-level fixed effects model corrected for serial autocorrelations (AR1) and low frequency signals (high-pass filter of 128 s): 
intial fear (nF): con_0001 
view fear (vF): con_0002 
regulate fear (tF): con_0003
initial phobia (nP): con_0004
view phobia (vP): con_0005 
regulate phobia (tP): con_0006 
initial neutral (nN): con_0007
view neutral (vN): con_0008 

**Folder ‚Second Level‘

File ‚final_background.nii‘: Background mean T1 image in group space 
File ‚Juelich_amy_50thrsh_mask_groupspace.nii‘: Bilateral amygdala mask used for ROI analyses, derived from the Juelich Atlas and transformed into group space

***Folder ‚GLM 1‘
Second level ANOVA random effects group level analysis comparing interactions of the experimental factors 'phase' (intial, viewing) and ‘stimulus type’ (phobia, fear, neutral) in a full-factorial within-subject GLM (group space)
Contrasts images include: 
0011(F) Effects of Interest
0020(T) Interaction phase x stimulus type 1 -1 0 -1 1 0 
0021(T) Interaction phase x stimulus type -1 1 0 1 -1 0 
0022(T) Initial > Viewing
0033(T) Viewing > Initial
0024(T) Fear > Neutral
0025(T) Phobia > Neutral
0026(T) Fear > Phobia
0027(T) Phobia > Fear

****Folder ‚Clusters‘
MNI coordinates of cluster maxima, voxel level statistics and atlas data from the above-mentioned contrasts as reported in the manuscript and in the supplementary material


***Folder ‚GLM 2‘
Second level ANOVA random effects group level analysis comparing interactions of the experimental factors 'regulation' (view, regulate) and ‘emotion’ (fear, phobia) in a full-factorial within-subject GLM. 
Contrasts images include: 
0009(T) Regulate > View
0010(T) View > Regulate
0011(T) Interaction regulation x emotion -1 1 1 -1
0012(T) Interaction regulation x emotion 1 -1 -1 1
0013(F) Effects of Interest

****Folder ‚Clusters‘
MNI coordinates of cluster maxima, voxel level statistics and atlas data from the above-mentioned contrasts as reported in the manuscript
DOI: 10.6084/m9.figshare.16940284
title: QB50 ISS Cubesat Orbits (ECI State vector & Osculating Keplerian Elements)

description: These QB50-ISS Cubesat orbits were generated from TLEs using the UCL Orbit Dynamics Library and the SGP4-propagator tool (Revisiting Spacetrack Report #3, Vallado et al) <br>
DOI: 10.6084/m9.figshare.16940284.v5
title: QB50 ISS Cubesat Orbits (ECI State vector & Osculating Keplerian Elements)

description: These QB50-ISS Cubesat orbits were generated from TLEs using the UCL Orbit Dynamics Library and the SGP4-propagator tool (Revisiting Spacetrack Report #3, Vallado et al) <br>
DOI: 10.6084/m9.figshare.16940284.v4
title: QB50 ISS Cubesat Orbits (ECI State vector & Osculating Keplerian Elements)

description: These QB50-ISS Cubesat orbits were generated from TLEs using the UCL Orbit Dynamics Library and the SGP4-propagator tool (Revisiting Spacetrack Report #3, Vallado et al) <br>
DOI: 10.17632/29cj24ch2s.1
title: 1. The 10 top-ranked Chinese, American and Italian universities (QS 2021) that publish the UPOCS online in the academic years of 2017-2018, 2018-2019 and 2019-2020.

description: A list of the 10 top-ranked Chinese, American and Italian universities (QS 2021) that publish the UPOCS online in the academic years of 2017-2018, 2018-2019 and 2019-2020.
DOI: 10.17632/pds7nxm5pf.1
title: 2. Procedural details of the three stages of the comparative move analysis

description: Procedural details of the three stages of the comparative move analysis
DOI: 10.17632/6r4zbfwg4b.1
title: 3. Data of the 24 moves in each subcorpus

description: Data of the 24 moves in each subcorpus
DOI: 10.17632/shfp8vwp57.1
title: 4. Description and example of ideational, interpersonal and textual moves

description: Description and example of ideational, interpersonal and textual moves
DOI: 10.17632/hxyrmgbp2y.1
title: 5. Cohen's Kappa in the Second Reliability Test

description: Cohen's Kappa in the Second Reliability Test
DOI: 10.17632/yr6k9nvfng.1
title: Ranganathaiah Chikkakuntappa Publication list 2021

description: Ranganathaiah Chikkakuntappa Publication list 2021
DOI: 10.3886/e122964
title: Data and Code for "The Elusive Employment Effect of the Minimum Wage"

description: This paper reviews the reasons, both empirical and theoretical, for why it seems hard to find a negative effect on employment effect of rises in the minimum wage: the elusive employment effect. <br><br><br><br><br>
description: Employees in the United States<br>. Smallest Geographic Unit: State
DOI: 10.17632/7yg2y4sdkn.1
title: 6. Definitions and examples of the moves of the UPOCS genre

description: Definitions and examples of the moves of the UPOCS genre
DOI: 10.3886/e122964v1
title: Data and Code for "The Elusive Employment Effect of the Minimum Wage"

description: This paper reviews the reasons, both empirical and theoretical, for why it seems hard to find a negative effect on employment effect of rises in the minimum wage: the elusive employment effect. <br><br><br><br><br>
description: Employees in the United States<br>. Smallest Geographic Unit: State
DOI: 10.17632/6gkfv2dznn.1
title: BCMO: Balancing Composite Motion Optimization

description: This Matlab package provides a less-parameter optimization algorithm based on concept of Balancing Composite Motion in classical mechanics. It is noted that this proposed algorithm is constructed without algorithm-specific parameters, the users can directly apply it to solve any unconstrained optimization problems without tuning special parameters. Some detailed definitions and instructions are also presented into the codes to help the users easily modify it for personal research and uses. More details about theoretical background can be found in [Thang Le-Duc, Quoc-Hung Nguyen, H. Nguyen-Xuan, Balancing Composite Motion Optimization, Information Sciences, in press, 2020 https://www.sciencedirect.com/science/article/pii/S0020025520300773]. We show below some necessary information of our BCMO package including

1. Structure of BCMO software package:

-Main.m: the main function for implementing BCMO to solve unconstrained optimization problems.
-OptimProblem.m: the function defining the objective function of unconstrained optimization problems.
-BCMO.m: the 100-line Matlab codes of BCMO solver.
2. How to solve unconstrained optimization problems by BCMO software package:
-Define the objective function in OptimProblem.m Define the necessary inputs (dimension, population size, maximum generation, bounds, etc.) in Main.m
-Run Main.m and wait until the optimization process done.
-Get output

An updated version can be found at https://github.com/ThangLe-duc/BCMO_Package/releases/tag/v1.1.