cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3832417_d1.v1
title: Additional file 1 of Basic parametric analysis for a multi-state model in hospital epidemiology

description: R function to calculate transition probabilities. This is the R-function used in the data analysis (Additional file 2) to calculate the transition probabilities of an extended illness-death model with constant hazards as plug-in values. (R 3 kb)
DOI: 10.6084/m9.figshare.c.3832417_d1
title: Additional file 1 of Basic parametric analysis for a multi-state model in hospital epidemiology

description: R function to calculate transition probabilities. This is the R-function used in the data analysis (Additional file 2) to calculate the transition probabilities of an extended illness-death model with constant hazards as plug-in values. (R 3 kb)
DOI: 10.6084/m9.figshare.c.3832417_d2.v1
title: Additional file 2 of Basic parametric analysis for a multi-state model in hospital epidemiology

description: R code of analysis of data example. This is the complete R script used in section 4 for the data analysis. (R 10 kb)
DOI: 10.6084/m9.figshare.c.3832408_d4.v1
title: Additional file 4: Table S2. of Genetic structure and gene flow of the flea Xenopsylla cheopis in Madagascar and Mayotte

description: Pairwise F ST and values between all populations. Table S3. Pairwise F ST ENA values among populations. (XLSX 12 kb)
DOI: 10.15468/dl.pyhu86
title: Occurrence Download

description: A dataset containing 15614 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((51.07902 30.65576,48.15898 30.65576,45.99357 29.96676,37.56155 32.13218,34.01813 29.70429,32.11519 30.4589,31.0981 29.70429,39.69416 12.11844,44.92105 9.52641,56.76736 12.52425,63.14986 21.71119,64.0202 25.67607,53.28599 28.52886,51.07902 30.65576))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anthozoa"
 ]
}

 The dataset includes 15614 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039042-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3833344_d3.v1
title: Additional file 3: of Genome-wide signals of positive selection in strongylocentrotid sea urchins

description: Consensus alignment files. A compressed (gzip) tape archive (TAR) file containing 6250 consensus alignment files in FASTA format. (TGZ 14116Â kb)
DOI: 10.6084/m9.figshare.c.3833359_d2.v1
title: Additional file 2 of Minimal tool set for a prokaryotic circadian clock

description: Supplement 2. This file contains the data of Table S5 in a CSV file. (CSV 7 kb)
DOI: 10.6084/m9.figshare.c.3833344_d3
title: Additional file 3: of Genome-wide signals of positive selection in strongylocentrotid sea urchins

description: Consensus alignment files. A compressed (gzip) tape archive (TAR) file containing 6250 consensus alignment files in FASTA format. (TGZ 14116Â kb)
DOI: 10.6084/m9.figshare.c.3833359_d2
title: Additional file 2 of Minimal tool set for a prokaryotic circadian clock

description: Supplement 2. This file contains the data of Table S5 in a CSV file. (CSV 7 kb)
DOI: 10.6084/m9.figshare.c.3833344_d4.v1
title: Additional file 4: of Genome-wide signals of positive selection in strongylocentrotid sea urchins

description: Results of test for Positive Selection. A Microsoft Excel data file containing the summary of tests for positive selection at the 6520 single-copy orthologs. Also included are measures of codon bias (ENC and Ncâ  ) and GC content. (XLS 3051Â kb)
DOI: 10.6084/m9.figshare.c.3833362_d5
title: Additional file 5 of Common and phylogenetically widespread coding for peptides by bacterial small RNAs

description: ORF prediction details. (XLSX 1020 kb)
DOI: 10.6084/m9.figshare.c.3833377_d1
title: Additional file 10: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

description: Mean and variance r2 estimated for each chromosome and for 2000 genetic distance points evenly distributed between 0.05 and 50 cM (100 and 1 generations in the past, respectively). For instance, the spreadsheets for the mean r2 were coded as: meanR2rep1_CompRCPT.xlsx, where 1 indicates method 1 and “CompRCPT” indicates the corresponding breed group. The spreadsheets for the r2 variances were coded as: “varR2rep1_CompRCPT.xlsx”, for example. (ZIP 29639 kb)
DOI: 10.15468/dl.8t8e2a
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathyraja interrupta (Gill & Townsend, 1897)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 55 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039043-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3833377_d2.v1
title: Additional file 11: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

description: Mean and variance N e estimated for each chromosome and for 2000 genetic distance points evenly distributed between 0.05 and 50 cM (100 and 1 generations in the past, respectively). The spreadsheets for the mean Ne were coded as: meanNerep1_CompRCPT.xlsx, where 1 indicates method 1 and “CompRCPT” indicates the breed group. The spreadsheets for the Ne variances were coded as: “varNerep1_CompRCPT.xlsx”, for example. (ZIP 24908 kb)
DOI: 10.6084/m9.figshare.c.3833383_d2.v1
title: Additional file 2: of Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize

description: List of enhancer candidates in V2-IST. The columns indicate from left to right: chromosome number, start coordinate, end coordinate, candidate ID, DNase intensity ranking, DNase ranking p value, H3K9ac intensity ranking and H3K9ac ranking p value, absence or presence of CNSs. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3833362_d6
title: Additional file 6 of Common and phylogenetically widespread coding for peptides by bacterial small RNAs

description: mock ORF sequences. (ZIP 3000 kb)
DOI: 10.6084/m9.figshare.c.3833377_d2
title: Additional file 11: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

description: Mean and variance N e estimated for each chromosome and for 2000 genetic distance points evenly distributed between 0.05 and 50 cM (100 and 1 generations in the past, respectively). The spreadsheets for the mean Ne were coded as: meanNerep1_CompRCPT.xlsx, where 1 indicates method 1 and “CompRCPT” indicates the breed group. The spreadsheets for the Ne variances were coded as: “varNerep1_CompRCPT.xlsx”, for example. (ZIP 24908 kb)
DOI: 10.6084/m9.figshare.c.3833383_d2
title: Additional file 2: of Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize

description: List of enhancer candidates in V2-IST. The columns indicate from left to right: chromosome number, start coordinate, end coordinate, candidate ID, DNase intensity ranking, DNase ranking p value, H3K9ac intensity ranking and H3K9ac ranking p value, absence or presence of CNSs. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3833377_d3.v1
title: Additional file 1: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

description: Description of the population based on pedigree information. The description of the populations based on pedigree information is given. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3833383_d3
title: Additional file 3: of Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize

description: List of enhancer candidates in husk. The columns indicate from left to right: chromosome number, start coordinate, end coordinate, candidate ID, DNase intensity ranking, DNase ranking p value, H3K9ac intensity ranking and H3K9ac ranking p value, absence or presence of CNSs. (XLSX 86 kb)
DOI: 10.6084/m9.figshare.c.3833377_d6
title: Additional file 4: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

description: OvineExpectedRecombinationRate.txt. This file contains information about physical and expected recombination rate for the entire sheep genome assembly (ISGC Oar_v3.1). The first line gives the correct setting to load it in the UCSC genome browser. This file contains four columns, the chromosome, the physical position for the previous markers, the physical position for the markers, and the expected recombination rate between the two markers. (TXT 1492Â kb)
DOI: 10.58099/pk/ermhxe
title: Opracowanie wydajnej ekstrakcji i symultanicznej analizy atypowych leków przeciwdepresyjnych i ich metabolitów z próbek wodnych

description: Zamieszczone dane powstały w wyniku realizacji zadania naukowego, w ramach grantu NCN MINIATURA 7 nr: 2023/07/X/ST4/01475
DOI: 10.6084/m9.figshare.c.3833377_d7
title: Additional file 5: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

description: OvineGeneticMap.IMF.txt. This file contains information about physical and genetics positions for the entire sheep genome assembly (ISGC Oar_v3.1). The first line gives the correct setting to load it in the UCSC genome browser. This file contains four columns, the chromosome, and the physical position for the previous markers, the physical position for the markers, and the genetic position for a marker. (TXT 1492Â kb)
DOI: 10.6084/m9.figshare.c.3833419_d1.v1
title: MOESM1 of A rapid and efficient in vitro regeneration system for lettuce (Lactuca sativa L.)

description: Additional file 1. A spreadsheet containing all raw data generated and analyzed during this study. The first sheet contains the data for cultivar ‘RSL NFR’ and the second sheet contains the data for cultivar ‘Winter Density’.
DOI: 10.6084/m9.figshare.c.3833419_d1
title: MOESM1 of A rapid and efficient in vitro regeneration system for lettuce (Lactuca sativa L.)

description: Additional file 1. A spreadsheet containing all raw data generated and analyzed during this study. The first sheet contains the data for cultivar ‘RSL NFR’ and the second sheet contains the data for cultivar ‘Winter Density’.
DOI: 10.6084/m9.figshare.c.3833437_d3.v1
title: Additional file 3: Table S2. of Epidemiology of taeniosis/cysticercosis in Europe, a systematic review: Western Europe

description: List of references included in the review retrieved through online international databases. (XLSX 30 kb)
DOI: 10.5281/zenodo.14513663
title: Data for "Efficient and practical Hamiltonian simulation from time-dependent product formulas"

description: Data for "Efficient and practical Hamiltonian simulation from time-dependent product formulas"

This dataset contains all data needed to reproduce the figures inEfficient and practical Hamiltonian simulation from time-dependent product formulas

All files are JLD2 files which can easily be read with JLD2.jl, but they are also HDF5 compatible and can thus be read with e.g. h5py/ when using Python.A detailled description of the contents of each file is found in README.md
DOI: 10.5281/zenodo.14513664
title: Data for "Efficient and practical Hamiltonian simulation from time-dependent product formulas"

description: Data for "Efficient and practical Hamiltonian simulation from time-dependent product formulas"

This dataset contains all data needed to reproduce the figures inEfficient and practical Hamiltonian simulation from time-dependent product formulas

All files are JLD2 files which can easily be read with JLD2.jl, but they are also HDF5 compatible and can thus be read with e.g. h5py/ when using Python.A detailled description of the contents of each file is found in README.md
DOI: 10.6084/m9.figshare.c.3833482_d2
title: Additional file 2: Table S2. of Characterization of background noise in capture-based targeted sequencing data

description: Genes targeted for massively parallel sequencing. Table S3. Summary of sequencing metrics for 19 paired plasma and PBL DNA samples. Table S4. Acoustic shearing conditions. Table S5. Donor characteristics and KRAS variant allele frequency. (XLSX 19 kb)
DOI: 10.15468/dl.bmqt7t
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathyraja minispinosa Ishiyama & Ishihara, 1977",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039044-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.28053170
title: Brahui and Oraon: Tracing the Northern Dravidian genetic link back to Balochistan

description: The genetic origin of ethnic groups present in South Asia is complex. Widespread factors such as complex societal caste structure, language shifts, the coexistence of tribal alongside caste populations, and a varied and vast geography augment this complexity. In face of this complexity, a holistic approach is required for the study of population histories. The isolated Dravidian population, Brahui in Pakistan, represents a remnant of complex ethnolinguistic population history. Genetic studies conducted to date have not demonstrated a close genetic link between the Brahui and other Dravidian populations of the Indian subcontinent. However, none of these studies included the Kurukh-Malto populations, which are linguistically closest to the Brahui. In this study, we included the Kurukh speaking Oraon population and their neighbours in high-resolution genetic analyses to investigate their allele and haplotype sharing with the Brahui population of Pakistan. Our intrapopulation analyses on Oraon collected from Bangladesh and India suggested a a common South Asian source for the Oraon that is genetically distinct from the extent of Indian Mundari (Austroasiatic) populations. The interpopulation comparison of Oraon showed a closer genetic affinity with the geographically more distant Mawasi (North Munda) and Gond (South Dravidian) populations, rather than their immediate neighbours. Moreover, our extensive statistical analyses found no signal of an Oraon-related ancestry inBrahui. One possible explanation to this finding is that thegenetic signature related to the Dravidian population might have been entirely lost in Brahui due toextensiveadmixture with neighboring populations.
DOI: 10.6084/m9.figshare.c.3834712_d1.v1
title: Additional file 1: of Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in a long-term care facility in the United Kingdom

description: Additional information for the dataset used in this study. The additional file includes demographic information including location of isolation and sample type along with genome sequence QC data, results of genomic typing and screening for antimicrobial resistance genes. (XLSX 145 kb)
DOI: 10.6084/m9.figshare.c.3834712_d1
title: Additional file 1: of Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in a long-term care facility in the United Kingdom

description: Additional information for the dataset used in this study. The additional file includes demographic information including location of isolation and sample type along with genome sequence QC data, results of genomic typing and screening for antimicrobial resistance genes. (XLSX 145 kb)
DOI: 10.6084/m9.figshare.c.3834721_d1.v1
title: Additional file 1: of Experimental determination of three-dimensional cervical joint mobility in the avian neck

description: Linear and angular measurements taken on CT scans of the 5 individuals used in this study. Measurements have been standardized by volume. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.c.3834760_d1.v1
title: Additional file 1: of Unraveling multifaceted contributions of small regulatory RNAs to photomorphogenic development in Arabidopsis

description: Table S1. Sequencing and mapping statistics. Description: Contains the number and percentage of mapped sRNA reads in sRNA and degradome sequencing. Table S2. Expressed miRNAs in de-etiolating Arabidopsis seedlings. Description: Contains the expression level of expressed miRNAs, with RPM and fold changes. Table S3. Expressed phasiRNAs in de-etiolating seedlings. Description: Contains the expression level of expressed phasiRNAs, with the corresponding PHAS locus, RPM and fold changes. Table S4. Expressed siRNAs in de-etiolating seedlings. Description: Contains the expression level of expressed siRNAs, with the sequence, length, RPM and fold changes. Table S5. miRNA-mRNA and phasiRNA-mRNA pairs from cross comparisons of sRNA transcriptome and mRNA degradome. Contains the information of miRNA/phasiRNA-mediated target cleavage, including locus number, CleaveLand categories, p-values and target mRNA levels. Table S6. siRNA-mRNA pairs from cross comparisons of sRNA transcriptome and mRNA degradome. Contains the information of siRNA-mediated target cleavage, including locus number, CleaveLand categories, p-values and target mRNA levels. Table S7. Expression levels of GRFs. Contains the expression level of GRFs under dark and light. Table S8. Primers used in this study. Contains sequences of the primers that are used in this study. (XLSX 2667 kb)
DOI: 10.6084/m9.figshare.c.3834760_d1
title: Additional file 1: of Unraveling multifaceted contributions of small regulatory RNAs to photomorphogenic development in Arabidopsis

description: Table S1. Sequencing and mapping statistics. Description: Contains the number and percentage of mapped sRNA reads in sRNA and degradome sequencing. Table S2. Expressed miRNAs in de-etiolating Arabidopsis seedlings. Description: Contains the expression level of expressed miRNAs, with RPM and fold changes. Table S3. Expressed phasiRNAs in de-etiolating seedlings. Description: Contains the expression level of expressed phasiRNAs, with the corresponding PHAS locus, RPM and fold changes. Table S4. Expressed siRNAs in de-etiolating seedlings. Description: Contains the expression level of expressed siRNAs, with the sequence, length, RPM and fold changes. Table S5. miRNA-mRNA and phasiRNA-mRNA pairs from cross comparisons of sRNA transcriptome and mRNA degradome. Contains the information of miRNA/phasiRNA-mediated target cleavage, including locus number, CleaveLand categories, p-values and target mRNA levels. Table S6. siRNA-mRNA pairs from cross comparisons of sRNA transcriptome and mRNA degradome. Contains the information of siRNA-mediated target cleavage, including locus number, CleaveLand categories, p-values and target mRNA levels. Table S7. Expression levels of GRFs. Contains the expression level of GRFs under dark and light. Table S8. Primers used in this study. Contains sequences of the primers that are used in this study. (XLSX 2667 kb)
DOI: 10.15468/dl.mz8cr4
title: Occurrence Download

description: A dataset containing 225 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Vicia oroboides Wulfen, Orobus vicioides Ser., Orobus rupensis Lerchenf., Orobus clusii Spreng., Orobus rupensis Lerchenf. ex Schur, Orobus pseudoclusii Schur, Vicia trijuga A.Braun & C.D.Bouché, Atossa clusii (Spreng.) Alef., Ervum trijugum (A.Braun & C.D.Bouché) Alef.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 225 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039045-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3834775_d2
title: Additional file 2 of Visibiome: an efficient microbiome search engine based on a scalable, distributed architecture

description: Spreadsheet comparing Open and Closed reference OTU picking The file is a spreadsheet in Microsoft Excel format. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3834808_d1.v1
title: Additional file 1: of TLR4 response mediates ethanol-induced neurodevelopment alterations in a model of fetal alcohol spectrum disorders

description: Figure S1. Role of TLR4 in the expression of cytokines (IL-1β, IL-17) and chemokines (fractalkine, MCP-1, MIP-1α) in the cerebral cortices of the WT and TLR4-KO male pups on PND 0 and 20 exposed, or not, to ethanol during the embryonic and postnatal periods. PPEE: prenatal and postnatal ethanol exposure. Data represent mean ± SEM, n = 4 mice/group. *p
DOI: 10.6084/m9.figshare.c.3834808_d1
title: Additional file 1: of TLR4 response mediates ethanol-induced neurodevelopment alterations in a model of fetal alcohol spectrum disorders

description: Figure S1. Role of TLR4 in the expression of cytokines (IL-1β, IL-17) and chemokines (fractalkine, MCP-1, MIP-1α) in the cerebral cortices of the WT and TLR4-KO male pups on PND 0 and 20 exposed, or not, to ethanol during the embryonic and postnatal periods. PPEE: prenatal and postnatal ethanol exposure. Data represent mean ± SEM, n = 4 mice/group. *p
DOI: 10.15468/dl.xthyfx
title: Occurrence Download

description: A dataset containing 13091 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Solenopsis geminata (Fabricius, 1804)"
 ]
}

 The dataset includes 13091 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039046-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.63m6by
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathyraja parmifera (Bean, 1881)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039047-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3834820_d2
title: Additional file 2: of Transcription through the eye of a needle: daily and annual cyclic gene expression variation in Douglas-fir needles

description: Daily environmental data associated with experiment. This file includes date (mm/dd/yyyy), experiment day, Julian day, experiment week, experiment month, minimum air temperature (Â°C), maximum air temperature (Â°C), mean daily air temperature (Â°C), daily precipitation (mm), day length (h:m:s), and the daily sum of solar radiant exposure (MJ/m2). The file can be opened in Microsoft EXCEL or any program that accepts text as tab-separated values. (TSV 20 kb)
DOI: 10.6084/m9.figshare.c.3834820_d3
title: Additional file 3: of Transcription through the eye of a needle: daily and annual cyclic gene expression variation in Douglas-fir needles

description: Summary of JTK-Cycle inferred cycle properties for diurnal and annual cyclic transcripts. The file can be opened in Microsoft EXCEL or any program that accepts text as tab-separated values. (TSV 3802 kb)