cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/7f5ct-qy052
title: V. cholerae CK2188 delta-tcpR

description: Classical strain with ctxA deletionStrain name CK2188 (tcpR gene knonkout)Cell harbors pMT5 plasmid (inducible toxT)
description: <strong>Tilt Series Date:</strong> 2016-08-06</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O395-N1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 140.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain from Gabriela Kovacikova</p>
<strong>Purification / Growth Conditions / Treatment:</strong> O/N cultures of Vibrio cholerae O395 N1 pMT5 grown in LB, 1 mM IPTG and 100 ug/mL ampicillin.</p>
<strong>Sample Preparation:</strong> Vitrobot (MK iv) settings: 100% humidity, 3.5µl sample, 10 mg/ml BSA treated gold. Blot force 6, blot time 3 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-08-06-11/rawdata/</p>20160806_YWC218_10011.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-08-06-11/rawdata/20160806_YWC218_10011.mrc"
        > <i class="download icon"></i> Download </a></p>

        20160806_YWC218_10011_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-08-06-11/3dimage_76402/20160806_YWC218_10011_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/9wes3-emr46
title: Coxiella_ Verocells_28dpi

description: Coxiella burnetii Nine Mile phase II clone 4 (NMIIC4) strain. Coxiella cells purified from infected Vero cells.
description: <strong>Tilt Series Date:</strong> 2017-09-25</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Coxiella burnetii</p>
<strong>Strain:</strong> Nine Mile phase II clone 4</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: -7.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Robert Heinzen. Data collected and processed by Debnath Ghosal using Caltech tomography pipeline.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Refer to Heinzen lab.</p>
<strong>Sample Preparation:</strong> Freezing: 100% humidity, 4µl sample, Blot force 6, blot time 4 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.T</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-09-25-96/rawdata/</p>Cb_vero_201709250096.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-09-25-96/rawdata/Cb_vero_201709250096.mrc"
        > <i class="download icon"></i> Download </a></p>

        Cb_vero_201709250096_part61_7.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-09-25-96/3dimage_88571/Cb_vero_201709250096_part61_7.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/nejr5-4bf27
title: V. cholerae JAS288 delta-tcpQ

description: Classical strain with ctxA deletionStrain name JAS288 (tcpQ gene knonkout)Cell harbors pMT5 plasmid (inducible toxT)
description: <strong>Tilt Series Date:</strong> 2016-09-14</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O395-N1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 145.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain from Gabriela Kovacikova</p>
<strong>Purification / Growth Conditions / Treatment:</strong> O/N cultures of Vibrio cholerae O395 N1 pMT5 grown in LB, 1 mM IPTG and 100 ug/mL ampicillin.</p>
<strong>Sample Preparation:</strong> Vitrobot (MK iv) settings: 100% humidity, 3.5µl sample, 10 mg/ml BSA treated gold. Blot force 6, blot time 3 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-09-14-21/rawdata/</p>20160914_YWC216_10021.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-09-14-21/rawdata/20160914_YWC216_10021.mrc"
        > <i class="download icon"></i> Download </a></p>

        20160914_YWC216_10021_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-09-14-21/3dimage_79095/20160914_YWC216_10021_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/rpdtx-r9h32
title: Halobacterium salinarum

description: Raw data files of Halobacterium salinarum
description: <strong>Tilt Series Date:</strong> 2016-12-16</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Halobacterium salinarum</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.50°, constant angular increment, dosage: 140.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> RAPTOR</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Robert Gunsalus, UCLA. Data collected and processed by Ki Woo and Debnath Ghosal</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Standard H. salinarum medium</p>
<strong>Sample Preparation:</strong> Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 3.5 sec. Wait time 8 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.</p>
  dga2016-12-16-9_slicer17295.jpg: spindle-shaped gas vesicles
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-12-16-9/3dimage_80642/</p>Hs_201612160008_full.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-12-16-9/3dimage_80642/Hs_201612160008_full.rec"
        > <i class="download icon"></i> Download </a></p>

        Hs_201612160008.mrc,  Tilt Series (Pixel Size 0.39 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-12-16-9/rawdata/Hs_201612160008.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.g4u9yd
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dendrobium hekouense"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048580-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5518/341
title: Dataset supporting the publication of 'Recovery of low volumes of wear debris from rat stifle joint tissues using a novel particle isolation method.'

description: The data set is part of a study in which a volume of 0.018 mm3 of clinically relevant CoCrMo, Ti-6Al-4V or Si3N4 particles was injected into rat stifle joints for seven days of in vivo exposure. The data set includes histological images of particles located within tissues sections at low and high magnifications for each of the materials. The data also includes measurements of particles that were made using image analysis software
DOI: 10.4121/902d7f9e-38bf-48a2-a2f7-52bbf7aeeedf
title: Data underlying the publication: Improved error correction with leakage reduction units built into qubit measurement in a superconducting quantum processor

description: This research is to demonstrate a zero-time overhead leakage reduction unit in superconducting qubit and investigate its benefit in quantum error correction in experiment. The dataset is to support findings in the paper. The experiments were done on a 17-qubit superconducting quantum processor. Data are collected by standard readout of superconducting qubits using RF signals. Experiments include characterization of the leakage reduction unit, and its application in memory experiments of a distance-3 repetition code and 7-qubit stability experiments. The characterization sweeps the control parameters and plots the key performance, defined in the paper. The error correction experiments repeatedly measure qubits using the circuits defined in the paper, and use a neural-network decoder to interpret the measurement outcomes. The processing, training and testing of measurement outcomes with neural-network can be found in https://github.com/MarcSerraPeralta/data-lru-integrated-with-measurement-for-qec/
DOI: 10.4121/902d7f9e-38bf-48a2-a2f7-52bbf7aeeedf.v1
title: Data underlying the publication: Improved error correction with leakage reduction units built into qubit measurement in a superconducting quantum processor

description: This research is to demonstrate a zero-time overhead leakage reduction unit in superconducting qubit and investigate its benefit in quantum error correction in experiment. The dataset is to support findings in the paper. The experiments were done on a 17-qubit superconducting quantum processor. Data are collected by standard readout of superconducting qubits using RF signals. Experiments include characterization of the leakage reduction unit, and its application in memory experiments of a distance-3 repetition code and 7-qubit stability experiments. The characterization sweeps the control parameters and plots the key performance, defined in the paper. The error correction experiments repeatedly measure qubits using the circuits defined in the paper, and use a neural-network decoder to interpret the measurement outcomes. The processing, training and testing of measurement outcomes with neural-network can be found in https://github.com/MarcSerraPeralta/data-lru-integrated-with-measurement-for-qec/
DOI: 10.5281/zenodo.17650493
title: weecology/portal-forecasts: 2025-11-19

description: Weekly forecasts for the Portal Project rodent population data. This dataset contains automated forecasts generated using multiple ecological forecasting models for the Portal Project's long-term rodent population study site in Arizona, USA.
description: This release contains the latest automated forecasts from the Portal Project forecasting pipeline. The forecasts are generated weekly and include predictions for multiple rodent species at the Portal Project study site. Data includes both abundance and biomass forecasts with associated uncertainty estimates.
DOI: 10.15468/dl.mzfbxa
title: Occurrence Download

description: A dataset containing 184 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is North America",
 "CoordinateUncertaintyInMeters 0.0-980.0",
 "Geometry POLYGON((-134.72559 8.87705,-59.02747 8.87705,-59.02747 51.79544,-134.72559 51.79544,-134.72559 8.87705))",
 "TaxonKey is Tripidium ravennae"
 ]
}

 The dataset includes 184 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045409-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.brjyz5
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ailurus styani",
 "Year 2010-2025"
 ]
}

 The dataset includes 61 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045405-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xyarqs
title: Occurrence Download

description: A dataset containing 3641 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 6.75971952984328",
 "DecimalLongitude is less than 6.76277908302768",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 3641 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045408-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17647949
title: RGB and Radiometric Drone Dataset for Novel View Synthesis

description: Drone based image dataset for the evaluation of novel view synthesis methods with a focus on the synthesis of radiometric/thermal views.
DOI: 10.5281/zenodo.17647950
title: RGB and Radiometric Drone Dataset for Novel View Synthesis

description: Drone based image dataset for the evaluation of novel view synthesis methods with a focus on the synthesis of radiometric/thermal views.
DOI: 10.34740/kaggle/dsv/13793198
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.16778447
title: Supplementary_Tables_Sanphasouk_2025

description: This document contains the Supplementary Tables of the article titled "Following the lynx: taphonomic insights into leporid accumulations from Unit 2 of Cova del Coll Verdaguer (Iberian Peninsula)".
DOI: 10.5281/zenodo.17651106
title: Supplementary_Tables_Sanphasouk_2025

description: This document contains the Supplementary Tables of the article titled "Following the lynx: taphonomic insights into leporid accumulations from Unit 2 of Cova del Coll Verdaguer (Iberian Peninsula)".
DOI: 10.5281/zenodo.17611899
title: DNA inoculation project supporting files

description: This archive contains the metagnome co-assembly of all samples and the co-assembly of the inoculums. It also contains all the data files needed to run the R scripts found on GitHub: https://github.com/le-labo-yergeau/DNA_Inoculation
description: Funding support: Natural Science and Engineering Research Council of Canada (NSERC) Discovery Grant (2014-05274) NSERC Strategic grant for project (STPGP 494702) Compute Canada Resource allocation on the Graham system (2018-714)
DOI: 10.5281/zenodo.3755973
title: DNA inoculation project supporting files

description: This archive contains the metagnome co-assembly of all samples and the co-assembly of the inoculums. It also contains all the data files needed to run the R scripts found on GitHub: https://github.com/le-labo-yergeau/DNA_Inoculation
description: Funding support: Natural Science and Engineering Research Council of Canada (NSERC) Discovery Grant (2014-05274) NSERC Strategic grant for project (STPGP 494702) Compute Canada Resource allocation on the Graham system (2018-714)
DOI: 10.25421/yorksj.30657104
title: Burnout Literacy Questionnaire-Student Version Data

description: Data and code to accompany the development of the Burnout Literacy Questionnaire-Student Version
DOI: 10.25421/yorksj.30657104.v1
title: Burnout Literacy Questionnaire-Student Version Data

description: Data and code to accompany the development of the Burnout Literacy Questionnaire-Student Version
DOI: 10.5281/zenodo.17609671
title: Observation of Perfect Absorption in Hyperfine Levels of Molecular Spins with Hermitian Subspaces

description: Dataset for Figures 1,2,3,4,5,6 of the main article of "Observation of Perfect Absorption in Hyperfine Levels of Molecular Spins with Hermitian Subspaces", by C. Bonizzoni (University of Modena and Reggio Emilia) and coauthors. Published on Nature Communications.
DOI: 10.5281/zenodo.17609672
title: Observation of Perfect Absorption in Hyperfine Levels of Molecular Spins with Hermitian Subspaces

description: Dataset for Figures 1,2,3,4,5,6 of the main article of "Observation of Perfect Absorption in Hyperfine Levels of Molecular Spins with Hermitian Subspaces", by C. Bonizzoni (University of Modena and Reggio Emilia) and coauthors. Published on Nature Communications.
DOI: 10.5281/zenodo.17632465
title: iccs dataset 2
DOI: 10.5281/zenodo.17632466
title: iccs dataset 2
DOI: 10.15468/dl.s6wcbb
title: Occurrence Download

description: A dataset containing 537300 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vicia sativa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 537300 records from 3128 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045360-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00005722.3
title: Available IPD datapackage for study 'An International Multi-centre Open-label 2-arm Phase III Trial of Adjuvant Bevacizumab in "Triple Negative" Breast Cancer.'

description: The main objective of the trial is to compare Invasive Disease-Free Survival (IDFS) of patients randomised to treatment with adjuvant chemotherapy alone or to adjuvant chemotherapy with 1 year of bevacizumab. The secondary objectives of this trial are to:   -  compare Overall Survival (OS), Breast Cancer-Free Interval (BCFI), Disease- Free Survival (DFS) and Distant Disease-Free Survival (DDFS) of patients randomised to treatment with adjuvant chemotherapy alone or to adjuvant chemotherapy in combination with 1 year of bevacizumab   -  evaluate the safety and tolerability of bevacizumab An exploratory sub-study (not reported here) was to identify biomarkers (from tumour or serum) predictive of toxicity and for the level of benefit from the addition of bevacizumab to standard adjuvant systemic treatment.
DOI: 10.25582/data.2024-04.3096505/2561985
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3096506/2561986
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3096508/2561987
title: Data for EMSL Project 51287 from April 2024
DOI: 10.15468/dl.24yn5v
title: Occurrence Download

description: A dataset containing 402 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cinnamomum tamala (Buch.-Ham.) T.Nees & Eberm."
 ]
}

 The dataset includes 402 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000821-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2024-04.3096509/2561988
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3096513/2561989
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3096516/2561990
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3096520/2561991
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3096521/2561992
title: Data for EMSL Project 51287 from April 2024
DOI: 10.15468/dl.j3uemb
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cinnamomum obtusifolium (Roxb.) Nees"
 ]
}

 The dataset includes 68 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000820-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2024-04.3096523/2561993
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3096524/2561994
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3096528/2561995
title: Data for EMSL Project 51287 from April 2024
DOI: 10.15468/dl.fmqg83
title: Occurrence Download

description: A dataset containing 1028 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Abacopteris Fée"
 ]
}

 The dataset includes 1028 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012514-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.