cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0155774.10fu
title: SH0155774.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.85ud4p
title: Occurrence Download

description: A dataset containing 89 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Laurus azorica",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 89 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013947-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48544/4b00af48-7d3e-4489-be03-88ef93180246
title: Thinking Outside the Campus
DOI: 10.15468/dl.k4su5g
title: Occurrence Download

description: A dataset containing 380 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ochotona curzoniae"
 ]
}

 The dataset includes 380 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013948-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28667366
title: FT-ICR MS, microbial, environmental, and network data for Couples in the deep: DOM-microbial linkages in the oxygenated hypolimnion of a deep freshwater lake (LB2204-LB2212)

description: FT-ICR MS, environmental, and network data for the paper "Couples in the deep: dissolved organic and microbial communities in the oxygenated hypolimnion of a deep freshwater lake". The paper is a part of the DOM-microbial association project in Lake Biwa (Japan) beginning in April 2022. The data contains those obtained in the first year, April to December 2022 (sample code LB2204-LB2212).We collected water samples monthly from the epilimnion (5 m, thermocline) and hypolimnion (60 m, 85 m) at a pelagic station (35°13′ ″N, 135°59′ ″E) of Lake Biwa (water depth: ca. 89 m) from April to December 2022. We measured vertical profiles of water chemistry (Temperature, electrical conductivity, chlorophyl fluorescence, turbidity, and dissolved oxygen) <i>in situ</i> using a CTD profiler. Chemical (DOC, TDN, FT-ICR MS) and microbial (16S rRNA amplicon sequencing) data were obtained as described in the paper. Included data files are:likeliestxmatchx_LBiwa_Ohira_after_datafiltration_noisotopologue_LB2212 (FT-ICR MS data)ASV_LB2212 (ASV data)env_LB2212 (environmental data)nodes_PIP_MF75_ASV50_surface (nodes file for Gephi, surface dataset)nodes_PIP_MF75_ASV50_deep (nodes file for Gephi, deep dataset)edges_PIP_MF75_ASV50_surface (edges file for Gephi, surface dataset)edges_PIP_MF75_ASV50_deep (edges file for Gephi, deep dataset)<br><br><br>
DOI: 10.6084/m9.figshare.28667366.v2
title: FT-ICR MS, microbial, environmental, and network data for Couples in the deep: DOM-microbial linkages in the oxygenated hypolimnion of a deep freshwater lake (LB2204-LB2212)

description: FT-ICR MS, environmental, and network data for the paper "Couples in the deep: dissolved organic and microbial communities in the oxygenated hypolimnion of a deep freshwater lake". The paper is a part of the DOM-microbial association project in Lake Biwa (Japan) beginning in April 2022. The data contains those obtained in the first year, April to December 2022 (sample code LB2204-LB2212).We collected water samples monthly from the epilimnion (5 m, thermocline) and hypolimnion (60 m, 85 m) at a pelagic station (35°13′ ″N, 135°59′ ″E) of Lake Biwa (water depth: ca. 89 m) from April to December 2022. We measured vertical profiles of water chemistry (Temperature, electrical conductivity, chlorophyl fluorescence, turbidity, and dissolved oxygen) <i>in situ</i> using a CTD profiler. Chemical (DOC, TDN, FT-ICR MS) and microbial (16S rRNA amplicon sequencing) data were obtained as described in the paper. Included data files are:likeliestxmatchx_LBiwa_Ohira_after_datafiltration_noisotopologue_LB2212 (FT-ICR MS data)ASV_LB2212 (ASV data)env_LB2212 (environmental data)nodes_PIP_MF75_ASV50_surface (nodes file for Gephi, surface dataset)nodes_PIP_MF75_ASV50_deep (nodes file for Gephi, deep dataset)edges_PIP_MF75_ASV50_surface (edges file for Gephi, surface dataset)edges_PIP_MF75_ASV50_deep (edges file for Gephi, deep dataset)<br><br><br>
DOI: 10.6084/m9.figshare.28667366.v1
title: FT-ICR MS, microbial, environmental, and network data for Couples in the deep: dissolved organic and microbial communities in the oxygenated hypolimnion of a deep freshwater lake (LB2204-LB2212)

description: FT-ICR MS, environmental, and network data for the paper "Couples in the deep: dissolved organic and microbial communities in the oxygenated hypolimnion of a deep freshwater lake". The paper is a part of the DOM-microbial association project in Lake Biwa (Japan) beginning in April 2022. The data contains those obtained in the first year, April to December 2022 (sample code LB2204-LB2212).We collected water samples monthly from the epilimnion (5 m, thermocline) and hypolimnion (60 m, 85 m) at a pelagic station (35°13′ ″N, 135°59′ ″E) of Lake Biwa (water depth: ca. 89 m) from April to December 2022. We measured vertical profiles of water chemistry (Temperature, electrical conductivity, chlorophyl fluorescence, turbidity, and dissolved oxygen) <i>in situ</i> using a CTD profiler. Chemical (DOC, TDN, FT-ICR MS) and microbial (16S rRNA amplicon sequencing) data were obtained as described in the paper. Included data files are:likeliestxmatchx_LBiwa_Ohira_after_datafiltration_noisotopologue_LB2212 (FT-ICR MS data)ASV_LB2212 (ASV data)env_LB2212 (environmental data)nodes_PIP_commonMF_ASV50_surface (nodes file for Gephi, surface dataset)edges_PIP_commonMF_ASV50_surface (edges file for Gephi, surface dataset)nodes_PIP_commonMF_ASV50_deep (nodes file for Gephi, deep dataset)edges_PIP_commonMF_ASV50_deep_ASVASV (edges file for Gephi, deep dataset including ASV-ASV links)<br><br><br>
DOI: 10.15468/dl.mmprc3
title: Occurrence Download

description: A dataset containing 22146 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Monitoreo de fauna silvestre en la zona de reubicación y margen derecha del Embalse El Quimbo"
 ]
}

 The dataset includes 22146 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013949-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31267171
title: HPV Associated dysbiosis of the cervicovaginal microbiota and its implications for vaginal ecosystem

description: dataset of the article
DOI: 10.6084/m9.figshare.31267171.v1
title: HPV Associated dysbiosis of the cervicovaginal microbiota and its implications for vaginal ecosystem

description: dataset of the article
DOI: 10.15468/dl.7fhh9j
title: Occurrence Download

description: A dataset containing 7147 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lathrobium brunnipes"
 ]
}

 The dataset includes 7147 records from 204 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013950-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2zhhx4
title: Occurrence Download

description: A dataset containing 1146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Laurus nobilis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1146 records from 214 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013952-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48548/pubdata-235
title: Water governance and sustainability outcomes: dataset from systematic review of 165 empirical water governance research articles

description: Coding data from the systematic literature review of 165 studies (223 cases), encompassing the years of 1985 - 2020. The coding scheme covers six categories: bibliographic information, research framework, research design, case-related information, the characteristics of the water-related context and water governance, and sustainability outcomes.
description: Content coding
DOI: 10.15468/estwpt
title: VIS - Fishes in estuarine waters in Flanders, Belgium

description: VIS - Fishes in estuarine waters in Flanders, Belgium is a species occurrence dataset published by the Research Institute for Nature and Forest (INBO) and described in Brosens et al. 2015 (https://doi.org/10.3897/zookeys.475.8556). The dataset contains over 70,000 fish occurrences sampled between 1992 and 2012 from almost 50 locations in the estuaries of the river Yser and the river Scheldt, in Flanders, Belgium. The dataset includes 69 fish species, as well as a number of non-target crustacean species. The data are retrieved from the Fish Information System (VIS), a database set up to monitor the status of fishes and their habitats in Flanders and are collected in support of the Water Framework Directive, the Habitat Directive, certain red lists, and biodiversity research. Additional information, such as measurements, absence information and abiotic data are available upon request. Issues with the dataset can be reported at https://github.com/LifeWatchINBO/data-publication/tree/master/datasets/vis-estuarine-occurrencesLength and weight measurement data of the individual fishes, absence information, occurrence data since 2013, as well as abiotic data of the sampling points (pH, temperature, etc.) are not included in the Darwin Core Archive and are available upon request.To allow anyone to use this dataset, we have released the data to the public domain under a Creative Commons Zero waiver (http://creativecommons.org/publicdomain/zero/1.0/). We would appreciate however, if you read and follow these norms for data use (http://www.inbo.be/en/norms-for-data-use) and provide a link to the original dataset (https://doi.org/10.15468/estwpt) whenever possible. If you use these data for a scientific paper, please cite the dataset following the applicable citation norms and/or consider us for co-authorship. We are always interested to know how you have used or visualized the data, or to provide more information, so please contact us via the contact information provided in the metadata, opendata@inbo.be or https://twitter.com/LifeWatchINBO.
DOI: 10.3929/ethz-b-000724832
title: Volumetric bioprinting of bone-like hydrogel constructs
DOI: 10.5281/zenodo.18495386
title: LINF_320032200

description: Cyclic nucleotide-binding domain containing protein | Axoneme-associated protein | FLAM6; Leishmania infantum (strain JPCM5)
DOI: 10.5281/zenodo.18495385
title: LINF_320032200

description: Cyclic nucleotide-binding domain containing protein | Axoneme-associated protein | FLAM6; Leishmania infantum (strain JPCM5)
DOI: 10.15468/dl.c9d3e9
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Licaria herrerae",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 25 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013953-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18495219
title: Gear-Like MOF Microrobots for Single Cell Mechanotransduction of Microvilli
DOI: 10.5281/zenodo.18495218
title: Gear-Like MOF Microrobots for Single Cell Mechanotransduction of Microvilli
DOI: 10.5281/zenodo.18495369
title: Dataset and Checkpoint for UniAlign
DOI: 10.5281/zenodo.18495368
title: Dataset and Checkpoint for UniAlign
DOI: 10.6084/m9.figshare.31267306
title: Remote versus in-clinic cochlear implant programming during rehabilitation: clinical outcomes and patient perspectives

description: Increasing cochlear implant (CI) demand due to broader candidacy and an ageing population challenges in-clinic rehabilitation. Remote programming offers a promising alternative to improve accessibility. This study evaluates its non-inferiority and optimal timing during rehabilitation. Forty-three postlingually deafened adults were divided into three groups: standard in-clinic fitting (<i>n</i> = 21), remote fitting during the second session (<i>n</i> = 12), and remote fitting during the third session (<i>n</i> = 10). Auditory outcomes at the fourth session were assessed using speech perception phoneme score at 65 dB SPL (primary outcome measure), free-field tone audiometry and programming parameters (M- and T-levels). Patient experiences with remote programming were evaluated <i>via</i> a dedicated questionnaire. Non-inferiority of remote versus in-clinic fitting was assessed. Speech perception phoneme score at 65 dB SPL was 73% (SD = 11) in the remote group and 76% (SD = 11) in the in-clinic group, with a mean difference of −3% (95% CI: −9.4 to 3.9), meeting the pre-specified non-inferiority margin. Free-field tone audiometry thresholds were not significantly different (remote: 24 ± 5 dB HL; in-clinic: 25 ± 5 dB HL). Patients without remote experience expressed more negative perceptions about the concept, whereas those with firsthand experience reported high satisfaction, ease of use, and willingness to continue remote sessions. Replacing one rehabilitation appointment with a remote fitting is non-inferior to standard in-clinic fitting for speech perception outcomes. Most patients reported high satisfaction, supporting its feasibility and accessibility. Remote fitting sessions can reduce travel burden and improve accessibility for patients with mobility or logistical challenges.One in-clinic rehabilitation appointment can be replaced with a remote cochlear implant fitting without compromising speech perception outcomes.Combining in-clinic and remote sessions in a hybrid rehabilitation model may increase efficiency and allow more patient-centered care. Remote fitting sessions can reduce travel burden and improve accessibility for patients with mobility or logistical challenges. One in-clinic rehabilitation appointment can be replaced with a remote cochlear implant fitting without compromising speech perception outcomes. Combining in-clinic and remote sessions in a hybrid rehabilitation model may increase efficiency and allow more patient-centered care.
DOI: 10.6084/m9.figshare.31267306.v1
title: Remote versus in-clinic cochlear implant programming during rehabilitation: clinical outcomes and patient perspectives

description: Increasing cochlear implant (CI) demand due to broader candidacy and an ageing population challenges in-clinic rehabilitation. Remote programming offers a promising alternative to improve accessibility. This study evaluates its non-inferiority and optimal timing during rehabilitation. Forty-three postlingually deafened adults were divided into three groups: standard in-clinic fitting (<i>n</i> = 21), remote fitting during the second session (<i>n</i> = 12), and remote fitting during the third session (<i>n</i> = 10). Auditory outcomes at the fourth session were assessed using speech perception phoneme score at 65 dB SPL (primary outcome measure), free-field tone audiometry and programming parameters (M- and T-levels). Patient experiences with remote programming were evaluated <i>via</i> a dedicated questionnaire. Non-inferiority of remote versus in-clinic fitting was assessed. Speech perception phoneme score at 65 dB SPL was 73% (SD = 11) in the remote group and 76% (SD = 11) in the in-clinic group, with a mean difference of −3% (95% CI: −9.4 to 3.9), meeting the pre-specified non-inferiority margin. Free-field tone audiometry thresholds were not significantly different (remote: 24 ± 5 dB HL; in-clinic: 25 ± 5 dB HL). Patients without remote experience expressed more negative perceptions about the concept, whereas those with firsthand experience reported high satisfaction, ease of use, and willingness to continue remote sessions. Replacing one rehabilitation appointment with a remote fitting is non-inferior to standard in-clinic fitting for speech perception outcomes. Most patients reported high satisfaction, supporting its feasibility and accessibility. Remote fitting sessions can reduce travel burden and improve accessibility for patients with mobility or logistical challenges.One in-clinic rehabilitation appointment can be replaced with a remote cochlear implant fitting without compromising speech perception outcomes.Combining in-clinic and remote sessions in a hybrid rehabilitation model may increase efficiency and allow more patient-centered care. Remote fitting sessions can reduce travel burden and improve accessibility for patients with mobility or logistical challenges. One in-clinic rehabilitation appointment can be replaced with a remote cochlear implant fitting without compromising speech perception outcomes. Combining in-clinic and remote sessions in a hybrid rehabilitation model may increase efficiency and allow more patient-centered care.
DOI: 10.6084/m9.figshare.22682301
title: METTL3 affects FLT3-ITD+ acute myeloid leukemia by mediating autophagy by regulating PSMA3-AS1 stability

description: The study was designed to explore
the role of PSMA3-AS1 in initiation and progression of acute myeloid leukemia
(AML) and investigate its action mechanism. Expression
of PSMA3-AS1, miR-20a-5p and ATG16L1 both <i>in
vitro</i> and <i>in vivo</i> was measured by
qRT-PCR. The expression of protein
was detected by western blot assay. Edu staining and flow cytometry were utilized
to measure cell proliferation and apoptosis. Potential target was predicted by
bioinformatics and was verified by dual-luciferase report gene assay and RNA
pull down assay. QRT-PCR was used to quantify autophagy (LC3, Beclin1, P62)
related genes. The m6A modification test is used to verify the effect of METTL3
on PSMA3-AS1. Tumor model was used to identify the
effect of PSMA3-AS1 on tumor growth <i>in
vivo</i>, and immunohistochemistry was applied to detect expression of ki67 and
TUNEL. The
results indicate that PSMA3-AS1 was upregulated in FLT3-ITD+
AML patients. Si-PSMA3-AS1 could inhibit the
proliferation, autophagy and promote the apoptosis in MV4-11 and Molm13 cells. METTL3 could enhance the PSMA3-AS1 RNA stability. In addition, this study
revealed that PSMA3-AS1 affected FLT3-ITD+ AML by
targeting expression of miR-20a-5p, and miR-20a-5p further modulated expression
of ATG16L1, an mRNA that down-regulated in AML, to affect disease advancement. PSMA3-AS1 could promote FLT3-ITD+
AML progression by regulating the level of autophagy through miR-20a-5p/ATG16L1
pathway. In addition, the increase of PSMA3-AS1 may be caused by the
involvement of METTL3 in regulating its stability. This discovery will provide
new horizons for early screening and targeted therapy of FLT3-ITD+ AML.
DOI: 10.6084/m9.figshare.22682301.v1
title: METTL3 affects FLT3-ITD+ acute myeloid leukemia by mediating autophagy by regulating PSMA3-AS1 stability

description: The study was designed to explore
the role of PSMA3-AS1 in initiation and progression of acute myeloid leukemia
(AML) and investigate its action mechanism. Expression
of PSMA3-AS1, miR-20a-5p and ATG16L1 both <i>in
vitro</i> and <i>in vivo</i> was measured by
qRT-PCR. The expression of protein
was detected by western blot assay. Edu staining and flow cytometry were utilized
to measure cell proliferation and apoptosis. Potential target was predicted by
bioinformatics and was verified by dual-luciferase report gene assay and RNA
pull down assay. QRT-PCR was used to quantify autophagy (LC3, Beclin1, P62)
related genes. The m6A modification test is used to verify the effect of METTL3
on PSMA3-AS1. Tumor model was used to identify the
effect of PSMA3-AS1 on tumor growth <i>in
vivo</i>, and immunohistochemistry was applied to detect expression of ki67 and
TUNEL. The
results indicate that PSMA3-AS1 was upregulated in FLT3-ITD+
AML patients. Si-PSMA3-AS1 could inhibit the
proliferation, autophagy and promote the apoptosis in MV4-11 and Molm13 cells. METTL3 could enhance the PSMA3-AS1 RNA stability. In addition, this study
revealed that PSMA3-AS1 affected FLT3-ITD+ AML by
targeting expression of miR-20a-5p, and miR-20a-5p further modulated expression
of ATG16L1, an mRNA that down-regulated in AML, to affect disease advancement. PSMA3-AS1 could promote FLT3-ITD+
AML progression by regulating the level of autophagy through miR-20a-5p/ATG16L1
pathway. In addition, the increase of PSMA3-AS1 may be caused by the
involvement of METTL3 in regulating its stability. This discovery will provide
new horizons for early screening and targeted therapy of FLT3-ITD+ AML.
DOI: 10.6084/m9.figshare.22692261
title: Establishment and validation of a novel integrin-based prognostic gene signature that sub-classifies gliomas and effectively predicts immunosuppressive microenvironment

description: The integrin family members play a key role in cancer immunomodulation and prognosis. We comprehensively analyzed the expression patterns and clinical significance of integrin family-related genes in gliomas. A total of 2293 gliomas from the Cancer Genome Atlas (TCGA), Chinese Glioma Genome Atlas (CGGA) and Gliovis platform were enrolled for analyses. Twenty-six integrin coding genes showed different expression patterns between glioma and normal brain tissues. We screened an integrin family-related gene signature (ITGA5, ITGA9, ITGAE, ITGB7 and ITGB8) that showed independent prognostic value and sub-classified gliomas into different prognostic and molecular clusters, further composed an integrin-based risk score model associated with glioma malignant clinical features, overall survival (OS), and immune microenvironment alterations. Besides, glioma patients with high-risk scores showed chemotherapeutic resistance and more immune cells infiltration as well as high immune checkpoints expression. Concurrently, we also revealed that high-risk score group presented resistance to T cell-mediated cancer killing process and lower rates of response to immune checkpoint blockade (ICB) treatment. In conclusion, our study identified a valuable integrin gene signature that predicted gliomas OS effectively, and sub-classified them into different phenotypes and accompanied with immunological changes, possibly acted as a biomarker for ICB treatment.