cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12336539.v1
title: Horse dataset

description: plink binary files including phenotype and genotype
DOI: 10.6084/m9.figshare.12336140
title: Datasets of 'Response of male and female domestic chicks to change in the number (quantity) of imprinting objects '

description: Datasets of Response of male and female domestic chicks to change in the number (quantity) of imprinting objects
DOI: 10.6084/m9.figshare.12336164.v1
title: Metadata record for: Large-scale metabolic interaction network of the mouse and human gut microbiota

description: This dataset contains key characteristics about the data described in the Data Descriptor Large-scale metabolic interaction network of the mouse and human gut microbiota. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12336539.v3
title: horse_Qc.bim

description: plink binary files including phenotype and genotype
DOI: 10.6084/m9.figshare.12336113
title: FUDK100.sav

description: SPSS file of Reaction Times for repeated Same / Different judgements for 225 pairs of 15 faces. Each pair presented simultaneously, in pseudo-random order, with reaction time recorded in milliseconds ; process repeated 100 times.Data collected from four participants (DK, HK, BF, SB). Repeated with facial stimuli in Upright and Inverted mode.DK and HK saw a "Female" series of expression stimuli (the seven Ekman emotion prototypes posed by Ekman-Friesen poser "MO", plus eight "mixed" expressions created by morphing). BF and SB saw a "Male" series of expression stimuli (the seven Ekman emotion prototypes posed by Ekman-Friesen poser "WF", plus eight "mixed" expressions created by morphing).
DOI: 10.6084/m9.figshare.12335543
title: extended data(SPIRIT 2013 Checklist).docx

description: we will study the effect of rehabilitation training based on temporal fine structure on speech in noise perception on patients over the age of 60 years with mild to moderate hearing loss. Age related hearing loss (Presbycusis) is one the most common cause of hearing loss worldwide. It is estimated almost 50% of population more than 75 years old suffer from Presbycusis. Presbycusis mostly characterized by recognition of target speech in noise environment. Sounds are decomposed by the auditory filters to slowly varying envelope (E) and rapid temporal fine structure (TFS). The most important task of TFS is to identify target speech from interfering sounds. Presbycusis highly associated with damage of TFS information. Previous studies indicated the damage of TFS information is permanent but in this study we attempt to prove base on rehabilitation training part of impairment in TFS information will be reestablished
DOI: 10.6084/m9.figshare.12336539.v2
title: horse_Qc.bim

description: plink binary files including phenotype and genotype
DOI: 10.6084/m9.figshare.12334577
title: AiZynthFinder: a fast, robust and flexible open-source software for retrosynthetic planning

description: This is public data to be used with the aizynthfinder tool for retrosynthesis planning (https://github.com/MolecularAI/aizynthfinder)<br>There are three files available:* full_uspto_03_05_19_rollout_policy.hdf5 - the Keras neural network model used as rollout policy* full_uspto_03_05_19_unique_templates.hdf5 - unique template codes that are used together with the policy to generate new precursors in the tree search* zinc_stock_17_04_20.hdf - stock file made from the ZINC database on 17:th of april 2020.
DOI: 10.6084/m9.figshare.12335543.v1
title: extended data(SPIRIT 2013 Checklist).docx

description: we will study the effect of rehabilitation training based on temporal fine structure on speech in noise perception on patients over the age of 60 years with mild to moderate hearing loss. Age related hearing loss (Presbycusis) is one the most common cause of hearing loss worldwide. It is estimated almost 50% of population more than 75 years old suffer from Presbycusis. Presbycusis mostly characterized by recognition of target speech in noise environment. Sounds are decomposed by the auditory filters to slowly varying envelope (E) and rapid temporal fine structure (TFS). The most important task of TFS is to identify target speech from interfering sounds. Presbycusis highly associated with damage of TFS information. Previous studies indicated the damage of TFS information is permanent but in this study we attempt to prove base on rehabilitation training part of impairment in TFS information will be reestablished
DOI: 10.6084/m9.figshare.12334127
title: Ontology Barbara Nanning

description: Ontology about the Verre Églomisé and Coloured Shadows collection of Barbara Nanning to be used for structuring enriched information describing her artworks and the related creation processes. A second purpose of this ontology is to provide stakeholders access to this information. An example of these stakeholders are cultural heritage experts for which the ontology facilitates search tasks.<br><br>
DOI: 10.6084/m9.figshare.12333833
title: Supplementary Material for: Disease-Specific Molecular Profiles Highlighted by Radar Graphic Display

description: <b><i>Background:</i></b> Management of hundreds of analytes obtained from the molecular multiplex techniques currently available may represent a challenge for clinicians in daily clinical practice. <b><i>Objectives:</i></b> The aim of the study was to describe a comprehensive and simple approach to assess such complex molecular results, to display relevant disease-specific signatures at a glance, and to facilitate their interpretation. <b><i>Method:</i></b> A total of 6,332 consecutive allergic patients, categorized based on clinical symptoms reported at the time of the first visit before IgE testing, were evaluated through ImmunoCAP ISAC112®. <b><i>Results and Conclusions:</i></b> The occurrence of bronchial asthma is associated with polcalcin, serum albumin, or lipocalin reactivity. Higher risk of severe reaction to food is linked to tropomyosin or nonspecific lipid transfer protein reactivity (in the absence of plant pathogenesis-related proteins [PR-10] or profilin sensitization). We used radar graphic display to highlight, at a glance, the molecular reactivity profiles associated with relevant disease-specific patterns.
DOI: 10.6084/m9.figshare.12334127.v1
title: Ontology Barbara Nanning

description: Ontology about the Verre Églomisé and Coloured Shadows collection of Barbara Nanning to be used for structuring enriched information describing her artworks and the related creation processes. A second purpose of this ontology is to provide stakeholders access to this information. An example of these stakeholders are cultural heritage experts for which the ontology facilitates search tasks.<br><br>
DOI: 10.6084/m9.figshare.12333746
title: Integrative taxonomic analysis reveals a new species of <i>Leptobrachium</i> (Anura: Megophryidae) from north-eastern Cambodia and central Vietnam

description: Species boundaries within the red-eyed <i>Leptobrachium</i> of southern Indochina have been uncertain. <i>Leptobrachium pullum</i> and <i>L. mouhoti</i> from upper and lower elevations, respectively, of the Langbian Plateau of southern Vietnam and eastern Cambodia differ in body size but have relatively low interspecific mitochondrial DNA divergence, leading to speculation that these might represent a single species with an elevational cline in body size. The recent discovery of an allopatric high-elevation population of red-eyed <i>Leptobrachium</i> on the Kon Tum Plateau (= Central Highlands) of north-eastern Cambodia and central Vietnam has been referred to both species, and to a putatively undescribed species. We examine variation in morphology of adults and tadpoles, mitochondrial DNA, 11 nuclear genes and advertisement calls, and show corroborating lines of evidence for the existence of three species of red-eyed <i>Leptobrachium</i> in southern Indochina. Although the three species are reciprocally monophyletic in mitochondrial DNA, their shallow mitochondrial DNA divergences are not mirrored by morphology, advertisement calls, or – in part – nuclear DNA, and probably reflect past mitochondrial introgression rather than recent speciation. The Central Highlands taxon is described herein as a new species. http://www.zoobank.org/urn:lsid:zoobank.org:pub:CE6650AF-D9FB-40F4-8A2E-9B4E23AAC205
DOI: 10.6084/m9.figshare.12333833.v1
title: Supplementary Material for: Disease-Specific Molecular Profiles Highlighted by Radar Graphic Display

description: <b><i>Background:</i></b> Management of hundreds of analytes obtained from the molecular multiplex techniques currently available may represent a challenge for clinicians in daily clinical practice. <b><i>Objectives:</i></b> The aim of the study was to describe a comprehensive and simple approach to assess such complex molecular results, to display relevant disease-specific signatures at a glance, and to facilitate their interpretation. <b><i>Method:</i></b> A total of 6,332 consecutive allergic patients, categorized based on clinical symptoms reported at the time of the first visit before IgE testing, were evaluated through ImmunoCAP ISAC112®. <b><i>Results and Conclusions:</i></b> The occurrence of bronchial asthma is associated with polcalcin, serum albumin, or lipocalin reactivity. Higher risk of severe reaction to food is linked to tropomyosin or nonspecific lipid transfer protein reactivity (in the absence of plant pathogenesis-related proteins [PR-10] or profilin sensitization). We used radar graphic display to highlight, at a glance, the molecular reactivity profiles associated with relevant disease-specific patterns.
DOI: 10.6084/m9.figshare.12333746.v1
title: Integrative taxonomic analysis reveals a new species of <i>Leptobrachium</i> (Anura: Megophryidae) from north-eastern Cambodia and central Vietnam

description: Species boundaries within the red-eyed <i>Leptobrachium</i> of southern Indochina have been uncertain. <i>Leptobrachium pullum</i> and <i>L. mouhoti</i> from upper and lower elevations, respectively, of the Langbian Plateau of southern Vietnam and eastern Cambodia differ in body size but have relatively low interspecific mitochondrial DNA divergence, leading to speculation that these might represent a single species with an elevational cline in body size. The recent discovery of an allopatric high-elevation population of red-eyed <i>Leptobrachium</i> on the Kon Tum Plateau (= Central Highlands) of north-eastern Cambodia and central Vietnam has been referred to both species, and to a putatively undescribed species. We examine variation in morphology of adults and tadpoles, mitochondrial DNA, 11 nuclear genes and advertisement calls, and show corroborating lines of evidence for the existence of three species of red-eyed <i>Leptobrachium</i> in southern Indochina. Although the three species are reciprocally monophyletic in mitochondrial DNA, their shallow mitochondrial DNA divergences are not mirrored by morphology, advertisement calls, or – in part – nuclear DNA, and probably reflect past mitochondrial introgression rather than recent speciation. The Central Highlands taxon is described herein as a new species. http://www.zoobank.org/urn:lsid:zoobank.org:pub:CE6650AF-D9FB-40F4-8A2E-9B4E23AAC205
DOI: 10.6084/m9.figshare.12334127.v3
title: Ontology Barbara Nanning

description: Ontology about the Verre Églomisé and Coloured Shadows collection of Barbara Nanning to be used for structuring enriched information describing her artworks and the related creation processes. A second purpose of this ontology is to provide stakeholders access to this information. An example of these stakeholders are cultural heritage experts for which the ontology facilitates search tasks.<br><br>
DOI: 10.6084/m9.figshare.12334127.v2
title: Ontology Barbara Nanning

description: Ontology about the Verre Églomisé and Coloured Shadows collection of Barbara Nanning to be used for structuring enriched information describing her artworks and the related creation processes. A second purpose of this ontology is to provide stakeholders access to this information. An example of these stakeholders are cultural heritage experts for which the ontology facilitates search tasks.<br><br>
DOI: 10.6084/m9.figshare.12333218
title: Data sets for 'The origin and evolution of biosynthetic pathway of fusidane-type antibiotics through multiple horizontal gene transfers'

description: Data sets for 'The origin and evolution of biosynthetic pathway of fusidane-type antibiotics through multiple horizontal gene transfers'
DOI: 10.6084/m9.figshare.12333170
title: A retrospective analysis of Journal of Forecasting: From 1982 to 2019

description: Raw data of the manuscript "A retrospective analysis of Journal of Forecasting: From 1982 to 2019"
DOI: 10.6084/m9.figshare.12333170.v1
title: A retrospective analysis of Journal of Forecasting: From 1982 to 2019

description: Raw data of the manuscript "A retrospective analysis of Journal of Forecasting: From 1982 to 2019"
DOI: 10.6084/m9.figshare.12333161
title: Fig. S6-9

description: Fig. S6-9: gene trees of AT, P450, GRE2, OSC and SDR familes
DOI: 10.6084/m9.figshare.12333167
title: Supplementary Material for: Antibiotics to Prevent Relapse of Adjustable Gastric Balloon Hyperinflation: Feasible for Balloon Maintenance?

description: The placement of an intragastric balloon (IGB) plays an increasingly important role in the treatment of obesity. The authors describe the cases of 2 female patients, 34 and 62 years old, who were submitted to the implantation of a Spatz3® IGB to treat obesity. Ten to fourteen weeks later, the patients presented complaints of epigastric pain, vomiting, and abdominal distension. A bulging of the upper abdominal wall was noticed upon physical examination. Upper gastrointestinal endoscopy confirmed the clinical suspicion of IGB hyperinflation. It was decided to remove the 500 mL of saline solution with methylene blue from inside the balloon. During the same procedure, the IGB was refilled with 500 mL of fresh saline solution, methylene blue, and empiric β-lactam antibiotic. The extracted content of the hyperinflated IGB was sent for microbiological culturing and was found to be positive for <i>Streptococcus viridans</i> in one of the cases. In the other case, the culture examination was negative, and after 8 weeks, the patient presented again with hyperinflation of the IGB. It was then decided to substitute the IGB with another balloon; the procedure was uneventful. The content of the removed IGB was sent for microbiological testing, and colonization by <i>Candida tropicalis</i>was confirmed. This is a rare but potentially serious complication of IGB placement. Randomized trials are needed to clarify the role of antibiotics and antifungals in primary and secondary prophylaxis against IGB hyperinflation.
DOI: 10.6084/m9.figshare.12333155
title: Supplementary Material for: Urinary Metabolic Profile of Patients with Transfusion-Dependent β-Thalassemia Major Undergoing Deferasirox Therapy

description: <b><i>Introduction:</i></b> Renal dysfunction is a frequent complication in patients suffering from β-thalassemia major (β-TM). The aim of this study was to analyze the renal function and urine metabolomic profile of β-TM patients undergoing transfusions and deferasirox (DFX) therapy, in order to better characterize and shed light on the pathogenesis of renal disease in this setting. <b><i>Methods and Subjects:</i></b> 40 patients affected by β-TM treated with DFX and 35 age- and gender-matched healthy controls were enrolled in the study. Renal function was assessed. Glomerular filtration rate (GFR) was estimated with CKD-EPI and Schwartz formula for adults and children, respectively. Renal tubular function and maximal urine concentration ability were tested. Urine specimens were analyzed by nuclear magnetic resonance spectroscopy to identify the urinary metabolite profiles. <b><i>Results:</i></b> The study of renal function in β-TM patients revealed normal estimated (e)GFR mean values and the albumin-to-creatinine ratio was &lt;30 mg/g. The analysis of tubular function showed normal basal plasma electrolyte levels; 60% of patients presented hypercalciuria and many subjects showed defective urine concentration. Several amino acids, N-methyl compounds, and organic acids were overexcreted in the urine of thalassemic patients compared with controls. <b><i>Discussion:</i></b> The major finding of this work is that β-TM patients and controls exhibit different concentrations of some metabolites in the urine. Early recognition of urinary abnormalities may be useful to detect and prevent kidney damage.
DOI: 10.6084/m9.figshare.12333218.v1
title: Data sets for 'The origin and evolution of biosynthetic pathway of fusidane-type antibiotics through multiple horizontal gene transfers'

description: Data sets for 'The origin and evolution of biosynthetic pathway of fusidane-type antibiotics through multiple horizontal gene transfers'
DOI: 10.6084/m9.figshare.12333155.v1
title: Supplementary Material for: Urinary Metabolic Profile of Patients with Transfusion-Dependent β-Thalassemia Major Undergoing Deferasirox Therapy

description: <b><i>Introduction:</i></b> Renal dysfunction is a frequent complication in patients suffering from β-thalassemia major (β-TM). The aim of this study was to analyze the renal function and urine metabolomic profile of β-TM patients undergoing transfusions and deferasirox (DFX) therapy, in order to better characterize and shed light on the pathogenesis of renal disease in this setting. <b><i>Methods and Subjects:</i></b> 40 patients affected by β-TM treated with DFX and 35 age- and gender-matched healthy controls were enrolled in the study. Renal function was assessed. Glomerular filtration rate (GFR) was estimated with CKD-EPI and Schwartz formula for adults and children, respectively. Renal tubular function and maximal urine concentration ability were tested. Urine specimens were analyzed by nuclear magnetic resonance spectroscopy to identify the urinary metabolite profiles. <b><i>Results:</i></b> The study of renal function in β-TM patients revealed normal estimated (e)GFR mean values and the albumin-to-creatinine ratio was &lt;30 mg/g. The analysis of tubular function showed normal basal plasma electrolyte levels; 60% of patients presented hypercalciuria and many subjects showed defective urine concentration. Several amino acids, N-methyl compounds, and organic acids were overexcreted in the urine of thalassemic patients compared with controls. <b><i>Discussion:</i></b> The major finding of this work is that β-TM patients and controls exhibit different concentrations of some metabolites in the urine. Early recognition of urinary abnormalities may be useful to detect and prevent kidney damage.
DOI: 10.6084/m9.figshare.12333161.v1
title: Fig. S6-9

description: Fig. S6-9: gene trees of AT, P450, GRE2, OSC and SDR familes
DOI: 10.6084/m9.figshare.12333167.v1
title: Supplementary Material for: Antibiotics to Prevent Relapse of Adjustable Gastric Balloon Hyperinflation: Feasible for Balloon Maintenance?

description: The placement of an intragastric balloon (IGB) plays an increasingly important role in the treatment of obesity. The authors describe the cases of 2 female patients, 34 and 62 years old, who were submitted to the implantation of a Spatz3® IGB to treat obesity. Ten to fourteen weeks later, the patients presented complaints of epigastric pain, vomiting, and abdominal distension. A bulging of the upper abdominal wall was noticed upon physical examination. Upper gastrointestinal endoscopy confirmed the clinical suspicion of IGB hyperinflation. It was decided to remove the 500 mL of saline solution with methylene blue from inside the balloon. During the same procedure, the IGB was refilled with 500 mL of fresh saline solution, methylene blue, and empiric β-lactam antibiotic. The extracted content of the hyperinflated IGB was sent for microbiological culturing and was found to be positive for <i>Streptococcus viridans</i> in one of the cases. In the other case, the culture examination was negative, and after 8 weeks, the patient presented again with hyperinflation of the IGB. It was then decided to substitute the IGB with another balloon; the procedure was uneventful. The content of the removed IGB was sent for microbiological testing, and colonization by <i>Candida tropicalis</i>was confirmed. This is a rare but potentially serious complication of IGB placement. Randomized trials are needed to clarify the role of antibiotics and antifungals in primary and secondary prophylaxis against IGB hyperinflation.
DOI: 10.6084/m9.figshare.12333143
title: Online Appendix

description: These two data sets represent GitHub pull requests and Issues from the entirety of 2019 from the GitHub defined Top-10 projects and a set of 71 repositories identified in the network automation space.
DOI: 10.6084/m9.figshare.12333146
title: Fig. 2A speices tree

description: Fig. 2A speices tree of 83 fungi
DOI: 10.6084/m9.figshare.12333146.v1
title: Fig. 2A speices tree

description: Fig. 2A speices tree of 83 fungi
DOI: 10.6084/m9.figshare.12333122
title: Data and code for Piepenbring et al. (2020) IMA Fungus 11:13.

description: Data and code for the data analyses used in Piepenbring, Maciá-Vicente, Codjia, Glatthorn, Kirk, Meswaet, Minter, Olou, Reschke, Schmidt, Yorou (2020) Mapping mycological ignorance – checklists and diversity patterns of fungi known for West Africa. IMA Fungus 11:13.
DOI: 10.6084/m9.figshare.12333107
title: 16S sequence data from Puigcorbé et al. Frontiers in Microbiology article - Effect of sampling method on particle-attached prokaryotes

description: The study compares the prokaryotic community structure, determined by high-throughput Illumina sequencing of the 16S rRNA genes, found in small (1-53 µm) and large (&gt;53 µm) marine particles collected using oceanographic bottles and in situ pumps. <br><br>The sampling was performed on board of the R/V Aurora Australis (AA-V02 2016/17) between December 8, 2016 and January 21, 2017, in the Dalton and the Mertz polynyas (East Antarctica; 67.2 - 66.8°S and 119.5-145.8°E). Data collection procedures are described in the paper "Sampling device-dependence of prokaryotic community structure on marine particles: higher diversity recovered by in situ pumps than by oceanographic bottles" by Viena Puigcorbé et al., Frontiers in Microbiology. <br><br> Here we provide the raw sequence data, together with the non-rarefied OUT table, taxonomy table and environmental data used in this study. The sequences are in the fasta format, they have treated and quality filtered as described in the article.
DOI: 10.6084/m9.figshare.12333143.v2
title: Online Appendix

description: These two data sets represent GitHub pull requests and Issues from the entirety of 2019 from the GitHub defined Top-10 projects and a set of 71 repositories identified in the network automation space.
DOI: 10.6084/m9.figshare.12333143.v1
title: Online Appendix

description: These two data sets represent GitHub pull requests and Issues from the entirety of 2019 from the GitHub defined Top-10 projects and a set of 71 repositories identified in the network automation space.
DOI: 10.6084/m9.figshare.12333104
title: Shi_Bulletin of the WHO_2020

description: Data and codes in Shi et al., 2020 in Bulletin of the WHO
DOI: 10.6084/m9.figshare.12332552
title: Genetic structure in 21 remnant Phoebe sheareri populations in southern China: Implications for genetic resource conservation.xlsx

description: 应用32对EST-SSR多态性引物分析了428个个体的21个自然种群。将EST-SSR标记扩增带转换为数字形式，以获得bp形式的数据矩阵。
DOI: 10.6084/m9.figshare.12333104.v1
title: Shi_Bulletin of the WHO_2020

description: Data and codes in Shi et al., 2020 in Bulletin of the WHO
DOI: 10.6084/m9.figshare.12333104.v3
title: Shi_Bulletin of the WHO_2020

description: Data and codes in Shi et al., 2020 in Bulletin of the WHO
DOI: 10.6084/m9.figshare.12333104.v2
title: Shi_Bulletin of the WHO_2020

description: Data and codes in Shi et al., 2020 in Bulletin of the WHO