cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3607331_d3.v1
title: Additional file 1: Table S1. of Genome-wide data reveal cryptic diversity and genetic introgression in an Oriental cynopterine fruit bat radiation

description: Sampling details consisting of information about number of individuals typed for each marker. Populations with mutiple sampling points are represented by one representative coordinate. FA = forearm length, EL = ear length and TIB = tibia length. All morphological measurements are recorded in millimeters (mm). (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3608261_d6.v1
title: Additional file 4: Table S3. of A novel cutoff for the waist-to-height ratio predicting metabolic syndrome in young American adults

description: Descriptives Statistics: Subsample of National Health and Nutrition Examination Survey, 2005-2008, n = 1 236 (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3608303_d2.v1
title: Additional file 2: of Water heater temperature set point and water use patterns influence Legionella pneumophila and associated microorganisms at the tap

description: Correlation Analysis. This contains all correlations analyses of quantitative polymerase chain reaction assays. (XLSX 24.2 kb)
DOI: 10.6084/m9.figshare.c.3608333_d1.v1
title: Additional file 2: of New dominant spa type t2741 in livestock-associated MRSA (CC398-MRSA-V) in Finnish fattening pigs at slaughter

description: Complete microarray data for each strain. (XLSX 86 kb)
DOI: 10.6084/m9.figshare.c.3608330_d1.v1
title: Additional file 1: of Ultrasonographic caval indices do not significantly contribute to predicting fluid responsiveness immediately after coronary artery bypass grafting when compared to passive leg raising

description: IVC_PLR_dataset (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3609338_d2.v1
title: Additional file 2: File S1. of Meta-transcriptomics indicates biotic cross-tolerance in willow trees cultivated on petroleum hydrocarbon contaminated soil

description: Containing abundance and annotation of 7486 differentially expressed genes. RNAseq data has been deposited in the European Nucleotide Archive (ENA) and can be found via the unique study accession number: PRJEB10287. (XLSX 1320 kb)
DOI: 10.6084/m9.figshare.c.3609368_d1.v1
title: Additional file 3: Table S1. of A systematic review of community-to-facility neonatal referral completion rates in Africa and Asia

description: Study description. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3610298_d5.v1
title: Additional file 6: of Longitudinal survey of Clostridium difficile presence and gut microbiota composition in a Belgian nursing home

description: MOTHUR script used for 16S rRNA gene analysis. (TXT 1Â kb)
DOI: 10.6084/m9.figshare.c.3611375_d4.v1
title: Additional file 10 of Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

description: Spearman test for correlations between precision (PPV) and the proportion of contacts for Ovch32 and HisKA-RR data sets. (CSV 0.13 kb)
DOI: 10.6084/m9.figshare.c.3611390_d2.v1
title: Additional file 5: of An improved genome reference for the African cichlid, Metriaclima zebra

description: Extended repeat results. The repetitive elements included in TableÂ 7 are highlighted in this file. (XLSX 54Â kb)
DOI: 10.6084/m9.figshare.c.3611375_d5.v1
title: Additional file 5 of Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

description: Accessions for Vif-A3G analysis. (CSV 0.73 kb)
DOI: 10.6084/m9.figshare.c.3611390_d3.v1
title: Additional file 3: of An improved genome reference for the African cichlid, Metriaclima zebra

description: Extended assembly statistics. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3611396_d1.v1
title: Additional file 1: of miR-124 attenuates Japanese encephalitis virus replication by targeting DNM2

description: The pathways of predicted target genes of miR-124. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3611375_d6.v1
title: Additional file 2 of Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

description: Accessions for HisKA-RR alignment. (CSV 796 kb)
DOI: 10.6084/m9.figshare.c.3611390_d4.v1
title: Additional file 1: of An improved genome reference for the African cichlid, Metriaclima zebra

description: Truseq2-PE.fa Illumina adapters used for Trimmomatic trimming. (CSV 566 bytes)
DOI: 10.6084/m9.figshare.c.3611390_d5.v1
title: Additional file 4: of An improved genome reference for the African cichlid, Metriaclima zebra

description: Extended ALE scores. (XLSX 50Â kb)
DOI: 10.6084/m9.figshare.c.3611375_d7.v1
title: Additional file 4 of Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

description: Sequence identifiers for the 60 subsampled alignments from the HisKA-RR master alignment. (CSV 5611 kb)
DOI: 10.6084/m9.figshare.c.3611375_d8.v1
title: Additional file 6 of Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

description: Uniprot identifiers for lentivirus proteins in HIV1-human interactome analysis. (CSV 0.803 kb)
DOI: 10.15468/dl.b2ztnm
title: Occurrence Download

description: A dataset containing 64206 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fuchsia L."
 ]
}

 The dataset includes 64206 records from 693 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038051-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3611375_d10.v1
title: Additional file 11 of Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

description: Mann-Whitney tests for difference in precision between MI and other methods for N eff /L &gt; 1.6 and FPR &lt; 0.1 % in the HisKA-RR sub-alignments, with contacts defined from experimental studies. (CSV 0.48 kb)
DOI: 10.6084/m9.figshare.c.3611375_d11.v1
title: Additional file 3 of Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

description: HisKA-RR master alignment. (ZIP 1136 kb)
DOI: 10.6084/m9.figshare.c.3611408_d3.v1
title: Additional file 2: Table S1. of An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize

description: Summary of Mo17 production and alignment results. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.28049732
title: Cephalotaxus harringtonii raw GC-MS files

description: Metabolite extraction from Cephalotaxus harringtonii leaf tissue
DOI: 10.6084/m9.figshare.28049732.v1
title: Cephalotaxus harringtonii raw GC-MS files

description: Metabolite extraction from Cephalotaxus harringtonii leaf tissue
DOI: 10.6084/m9.figshare.c.3612398_d1.v1
title: Additional file 3: of Genomic and proteomic evidence supporting the division of the plant pathogen Ralstonia solanacearum into three species

description: MALDI-TOF peak lists. Peak lists extracted from MALDI-TOF spectrum for 73 R. solanacearum strains with FlexAnalysis software (Bruker Daltonics). (ZIP 76 kb)
DOI: 10.6084/m9.figshare.c.3612398_d2.v1
title: Additional file 2: of Genomic and proteomic evidence supporting the division of the plant pathogen Ralstonia solanacearum into three species

description: Bacterial strains used for proteomic analysis. Phylotype and sequevar classifications for the strains in the R. solanacearum species complex were determined as previously described [14]. The sequenced strains are highlighted in green. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3612398_d3.v1
title: Additional file 1: of Genomic and proteomic evidence supporting the division of the plant pathogen Ralstonia solanacearum into three species

description: Genomic distance matrices. Pairwise comparisons of 29 sequenced genomes from the R. solanacearum species complex using the ANI, MUMi and GGDC methods. The orange, blue and green cells represent strains clustered into species using the criteria specific to each method and corresponding to 70Â % DDH. (XLSX 45 kb)
DOI: 10.34740/kaggle/ds/6321337
title: Catalan proverbs: explanation and context
DOI: 10.6084/m9.figshare.c.3612416_d1.v1
title: Additional file 2: of Leukotriene receptor expression in esophageal squamous cell cancer and non-transformed esophageal epithelium: a matched case control study

description: Raw data of immunohistochemical scores and polymerase chain reactions. (XLS 10 kb)
DOI: 10.6084/m9.figshare.c.3612392_d4.v1
title: Additional file 5: Table S1. of BRG1 interacts with GLI2 and binds Mef2c gene in a hedgehog signalling dependent manner during in vitro cardiomyogenesis

description: A complete list of gene ontology biological processes significantly enriched among genes within 50Â kb of a BRG1-associating site and GLI consensus binding motif. (XLSX 490Â kb)
DOI: 10.6084/m9.figshare.c.3612419_d1.v1
title: Additional file 4: of Genetic association and stress mediated down-regulation in trabecular meshwork implicates MPP7 as a novel candidate gene in primary open angle glaucoma

description: Contains table representing SNPs removed from the analysis for significantly different allele frequencies in discovery and validation cohorts. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.c.3612413_d3.v1
title: Additional file 6: Table S3. of A tissue-specific protein purification approach in Caenorhabditis elegans identifies novel interaction partners of DLG-1/Discs large

description: Expanded copy of TableÂ 2 in the main text including peptide numbers. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3613100_d4.v1
title: Additional file 4: of Implementation of an extended ZINB model in the study of low levels of natural gastrointestinal nematode infections in adult sheep

description: Raw data used. (TXT 5 kb)
DOI: 10.6084/m9.figshare.c.3613442_d19.v1
title: Additional file 15: of Tankyrase inhibition impairs directional migration and invasion of lung cancer cells by affecting microtubule dynamics and polarity signals

description: Raw data for Fig.Â 5 . (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3613499_d9.v1
title: Additional file 8: of Identification of the meiotic toolkit in diatoms and exploration of meiosis-specific SPO11 and RAD51 homologs in the sexual species Pseudo-nitzschia multistriata and Seminavis robusta

description: Protein sequences for meiotic genes from the Pseudo-nitzschia multistriata genome in fasta format. (FASTA 54 kb)
DOI: 10.6084/m9.figshare.c.3613499_d10.v1
title: Additional file 10: of Identification of the meiotic toolkit in diatoms and exploration of meiosis-specific SPO11 and RAD51 homologs in the sexual species Pseudo-nitzschia multistriata and Seminavis robusta

description: Protein sequences for meiotic genes for Seminavis robusta in fasta format. (FAS 37 kb)
DOI: 10.6084/m9.figshare.c.3613499_d11.v1
title: Additional file 12: of Identification of the meiotic toolkit in diatoms and exploration of meiosis-specific SPO11 and RAD51 homologs in the sexual species Pseudo-nitzschia multistriata and Seminavis robusta

description: List of the genes and corresponding primers tested in Pseudo-nitzschia multistriata with qPCR. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3613526_d3.v1
title: Additional file 5: Table S3. of Computational inference of a genomic pluripotency signature in human and mouse stem cells

description: Predicted stemness regulators in human and mouse ESCs from the logistic regression models with LASSO (E+P). (XLSX 834 kb)
DOI: 10.6084/m9.figshare.c.3613544_d2.v1
title: Additional file 3: Table S1. of Microbiological, clinical and molecular findings of non-typhoidal Salmonella bloodstream infections associated with malaria, Oriental Province, Democratic Republic of the Congo

description: Dataset of isolates collected in the Oriental Province, DRC between 2009 and 2014 that were used for this paper. DCS = Decreased Ciprofloxacin Susceptibility; R = Resistance; ZOI: Zone of inhibition. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3613526_d6.v1
title: Additional file 4: Table S2. of Computational inference of a genomic pluripotency signature in human and mouse stem cells

description: Pairwise correlation coefficients between selected histone modification marks including count and breadth data features. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.c.3613547_d2.v1
title: Additional file 4: Table S3. of miR-155 in the progression of lung fibrosis in systemic sclerosis

description: Demographic data of patients with SSc-ILD and healthy controls for the miRNA analysis in PBMC. %FVC percentage forced vital capacity. %DLCO percentage diffusing capacity of the lung for carbon monoxide, LSSc limited systemic sclerosis, DSSc diffuse systemic sclerosis. (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.c.3614036_d1.v1
title: Additional file 1: Table S1. of Colonization of Enteroaggregative Escherichia coli and Shiga toxin-producing Escherichia coli in chickens and humans in southern Vietnam

description: Patterns of antimicrobial resistance in EAEC and STEC isolated from humans in southern Vietnam. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3614051_d1.v1
title: Additional file 1: of Automatic detection of ventilatory modes during invasive mechanical ventilation

description: The database on which this study is based. (XLS 77 kb)
DOI: 10.15468/dl.3968mm
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Mammalogy Collection - Royal Ontario Museum",
 "TaxonKey is Mimon Gray, 1847"
 ]
}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038053-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3614474_d15.v1
title: Additional file 5: Table S4. of A systematic comparison of copy number alterations in four types of female cancer

description: Highest percentage of overlap between α (CBS) and γ (PCF) – gains and losses. Table S4A demonstrates the highest percentage of overlap between α (CBS) and γ (PCF) for amplification GISTIC focal peaks of female cancers. Table S4B shows the highest overlap of α and γ for deletion GISTIC focal peaks. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3614531_d1.v1
title: Additional file 1: Table S1. of MMinte: an application for predicting metabolic interactions among the microbial species in a community

description: (XLSX 78 kb)
DOI: 10.6084/m9.figshare.c.3614534_d1.v1
title: Additional file 1: Table S1. of The height-, weight- and BMI-for-age of preschool children from Nizhny Novgorod city, Russia, relative to the international growth references

description: Russian preschool children height, weight and BMI by sex and age. Table provides descriptive statistics of height (mean, median, min, max, SD, 95 % CI), weight and BMI (mean, median, min, max, 95 % CI) by sex and age. (XLS 32 kb)
DOI: 10.6084/m9.figshare.28049735
title: Cercis canadensis raw GC-MS files

description: Metabolite extraction from Cercis canadensis leaf tissue
DOI: 10.6084/m9.figshare.c.3614549_d1.v1
title: Additional file 2: of Genetic dissection of the fatty liver QTL Fl1sa by using congenic mice and identification of candidate genes in the liver and epididymal fat

description: Expression profiles of all genes in R2 and R3 regions. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3614549_d2.v1
title: Additional file 5: of Genetic dissection of the fatty liver QTL Fl1sa by using congenic mice and identification of candidate genes in the liver and epididymal fat

description: Allelle variants on chromosome 12 (Centromere-46.75Â Mb) in SM/J strain versus C57BL/6 strain. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3615044_d1.v1
title: Additional file 1: Table S1. of Development of Cytoplasmic Male Sterile IR24 and IR64 Using CW-CMS/Rf17 System

description: Comparison of agronomic characteristics between CMS line and maintainer line in 2015. (XLS 35Â kb)
DOI: 10.6084/m9.figshare.c.3615017_d7.v1
title: Additional file 3: Table S3. of A metagenomic approach from aphid’s hemolymph sheds light on the potential roles of co-existing endosymbionts

description: General features of Wolbachia’s genomes. (XLSX 10.7 kb)
DOI: 10.6084/m9.figshare.c.3615059_d2.v1
title: Additional file 1: Table S1. of Transcriptional profiling analysis of Penicillium digitatum, the causal agent of citrus green mold, unravels an inhibited ergosterol biosynthesis pathway in response to citral

description: Annotation of all Penicillium digitatum unigenes. (XLS 11070 kb)
DOI: 10.6084/m9.figshare.c.3615059_d3.v1
title: Additional file 3: Table S3. of Transcriptional profiling analysis of Penicillium digitatum, the causal agent of citrus green mold, unravels an inhibited ergosterol biosynthesis pathway in response to citral

description: The differentially expressed genes in untreated Penicillium digitatum (CK30) and citral-treated P. digitatum (T30) (Pâ
DOI: 10.15468/dl.grn8xg
title: Occurrence Download

description: A dataset containing 106071 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Phalacrocorax brasilianus (Gmelin, 1789)"
 ]
}

 The dataset includes 106071 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038013-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3615548_d2.v1
title: MOESM3 of Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies

description: Additional file 3. Compressed rar file containing the bins generated from the biogas fermenter metagenome, part 3 of 4.
DOI: 10.6084/m9.figshare.c.3615557_d3.v1
title: Additional file 5: of Comprehensive profiling of functional Epstein-Barr virus miRNA expression in human cell lines

description: List of EBV miRNA sequence variants. The most highly abundant sequence, the normalized sequence read counts (reads per million genome-mapped reads), the percentage of canonical sequences and percentage of 5â   terminus variants of each EBV miRNA in the five cell lines are shown (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3615548_d4.v1
title: MOESM2 of Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies

description: Additional file 2. Compressed rar file containing the bins generated from the biogas fermenter metagenome, part 2 of 4.
DOI: 10.6084/m9.figshare.c.3615548_d5.v1
title: MOESM1 of Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies

description: Additional file 1. Compressed rar file containing the bins generated from the biogas fermenter metagenome, part 1 of 4.
DOI: 10.6084/m9.figshare.c.3615578_d1.v1
title: Additional file 1: of The antifibrotic and fibrolytic properties of date fruit extract via modulation of genotoxicity, tissue-inhibitor of metalloproteinases and nuclear factor- kappa B pathway in a rat model of hepatotoxicity

description: Effect of DFE, DPE and coffee on liver function markers, hepatic levels of 8-OHdG, MMP-9 and TIMP-1 in CCl4-intoxicated rats a: significantly different from normal control group; b: significantly different from CCl4-treated group. Values are expressed as mean Âą SEM. *** P &lt; 0.001, ** P &lt; 0.01. ALT: alanine aminotransferase; AST: aspartate aminotransferase. (XLS 23Â kb)
DOI: 10.6084/m9.figshare.c.3615581_d1.v1
title: Additional file 1: Table S1. of The early immune response to infection of chickens with Infectious Bronchitis Virus (IBV) in susceptible and resistant birds

description: Gene expression seen during the host response to IBV infection in the trachea of susceptible birds. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3616082_d1.v1
title: Additional file 1: Table S1. of Are high-viscosity glass-ionomer cements inferior to silver amalgam as restorative materials for permanent posterior teeth? A Bayesian analysis

description: Extracted event data. (XLS 127Â kb)
DOI: 10.6084/m9.figshare.c.3616055_d4.v1
title: Additional file 4: of Genetic characterization of measles virus in the Philippines, 2008â  2011

description: Table S2.
DOI: 10.6084/m9.figshare.c.3616055_d5.v1
title: Additional file 2: of Genetic characterization of measles virus in the Philippines, 2008â  2011

description: Table S1.
DOI: 10.6084/m9.figshare.c.3616538_d4.v1
title: MOESM1 of Real-time urinary electrolyte monitoring after furosemide administration in surgical ICU patients with normal renal function

description: Additional file 1. Dataset of single-dose group.
DOI: 10.6084/m9.figshare.c.3616556_d1.v1
title: Additional file 6: of MicroRNA and mRNA expression profiling analysis revealed the regulation of plant height in Gossypium hirsutum

description: miR166 family and the targets in dwarf mutant (A1) and tall-mutant (A3). (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3616556_d2.v1
title: Additional file 7: of MicroRNA and mRNA expression profiling analysis revealed the regulation of plant height in Gossypium hirsutum

description: Predicted targets of miRNAs different expressed between tall-mutant (A3) and wild-type (A9). (XLSX 82 kb)
DOI: 10.6084/m9.figshare.c.3616556_d3.v1
title: Additional file 11: of MicroRNA and mRNA expression profiling analysis revealed the regulation of plant height in Gossypium hirsutum

description: The miRNA/target interactions validated by PAREsnip program. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3616562_d1.v1
title: Additional file 1: Table S1. of Genome analysis of Daldinia eschscholtzii strains UM 1400 and UM 1020, wood-decaying fungi isolated from human hosts

description: Families of transposable elementsÂ identified in the genomes of Daldinia eschscholtzii UM 1400 and UM 1020â  . Table S2. Information of the genome sequences used in phylogenomic and gene family analyses. Table S3. List of gene families and the distribution of the genes in each family among 11 Sordariomycetes fungi. Table S4. Gene families shared by both Daldinia eschscholtzii UM 1400 and UM 1020. Table S5. Number of CAZymes involved in plant polysaccharide degradation of 14 fungal genomes based on CAZyme databaseÂ (used in Table 2). Table S6. List of predicted secondary metabolite backbone genes. Table S7. List of predicted genes encoding metallopeptidases (families M35 and M36) and subtilisin-like peptidases (subfamily S08A). Table S8. List of predicted genes encoding mitogen-activated protein kinase (MAPK) signaling components . Table S9. List of predicted genes encoding stress response proteins involved in adaptive responses to osmotic stress, pH stress, thermal stress, iron ion availability, nutrient stress, oxidative stress, and nitrosative stress for adaptation in harsh environment. (XLSX 1091 kb)
DOI: 10.6084/m9.figshare.c.3616559_d2.v1
title: Additional file 1: of Copayment and recommended strategies to mitigate its impacts on access to emergency medical services under universal health coverage: a case study from Thailand

description: Interview Question Guideline. (XLSX 23Â kb)