cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.bn281/7
title: treebase accession number 14102

description: Link to treebase data. ML and BCA trees: http://purl.org/phylo/treebase/phylows/study/TB2:S14102
DOI: 10.5061/dryad.f8j02/3
title: SI Twenty-Five-Role-Environment Experiments

description: In this section of the paper, we presented an additional experiment performed using the Avida digital evolution software platform in which we provided the organisms with 25 simpler tasks that they could perform. Within this file, the treatments are: d. 1000 resources, 0 task-switching costs. e. 1000 resources, 25 task-switching costs. f. 1000 resources, 50 task-switching costs. We used the shannon column to compute the information in Figure S1(a) and the demereact column to compute the information in Figure S2(b).
DOI: 10.5061/dryad.f8j02/4
title: Task-Switching Costs Promote Division of Labor

description: This file describes the results of our central experiment performed using the Avida digital evolution software platform. Specifically, it provides the mean amount of Shannon mutual information among tasks and individuals across three resource requirements (250, 500, and 1000) using three task-switching costs (0, 25, 50). Within this file, the treatments are: a. 500 resources, 0 task-switching costs. d. 500 resources, 25 task-switching costs. e. 500 resources, 50 task-switching costs. a250. 250 resources, 0 task-switching costs. d250. 250 resources, 25 task-switching costs. e250. 250 resources, 50 task-switching costs. a1000. 1000 resources, 0 task-switching costs. d1000. 1000 resources, 25 task-switching costs. e1000. 1000 resources, 50 task-switching costs. We used the shannon column to compute the information in Table 2. Additionally, information from the demereact column is used to discuss the number of types of tasks performed by the various treatments.
DOI: 10.5061/dryad.g56h3/1
title: Sexuel orientation_Auer

description: Data has been acquired by means of a paper-based questionnaire. Explanation of variable names can be found at the top line of the excel-sheet.
DOI: 10.5061/dryad.h3g63/1
title: R script for Sarcophaga reanalysis

description: R script detailing the reanalysis of COI data of Sarcophaga species from Dowton et al. (2014; http://dx.doi.org/10.1093/sysbio/syu028).
DOI: 10.5061/dryad.h3g63/2
title: COI_corrected

description: Fasta file of corrected COI sequences from Dowton et al.
DOI: 10.5061/dryad.m466f/11
title: CBA23_distances

description: Pairwise distances at locus CBA23 between the 579 individuals that were analyzed.  These distances were calculated using the meandistance.matrix function in the R package "polysat" version 0.1, using the Bruvo.distance measure.  Each file contains a square matrix with row names and column names (sample names), as produced by the write.csv function in R version 2.11 under default parameters.
DOI: 10.5061/dryad.m466f/12
title: CBA23_genotypes

description: Microsatellite genotypes at locus CBA23.  This is a tab-delimited text file in the format produced by Applied Biosystems GeneMapper software version 3.7.  Each sample*locus genotype is represented in one row.  The "Sample Name" column gives names of samples that directly correspond to those used in "species_chloroplast_latlong.csv".  The "Well" column indicates the location of the sample on the DNA dilution plates.  The "Marker" column indicates the microsatellite marker.  The "Panel" column indicates groups of markers that were run simultaneously on the ABI3100 capillary sequencer.  The "Dye" column indicates the fluorescent tag used to detect the PCR fragments: Y for NED, G for HEX, and B for FAM.  The "Allele" columns contain the names of all alleles detected for each genotype.  Cells are left blank if fewer alleles were detected than the number of columns.  A value of -9 for Allele 1 indicates missing data.  The "Height" columns indicate the height of the peak representing each allele, and the "Size" columns indicate the exact size of the DNA fragment as calculated by GeneMapper.  A value of "TRUE" in the "AE" column indicates that the genotype was manually edited in GeneMapper, although all genotypes were visually inspected.  The R package "polysat" can read these file directly, and will use the "Sample Name", "Marker", and "Allele" columns, and will ignore all other columns.
DOI: 10.5061/dryad.m466f/36
title: rubus_photos3

description: Photographs of plants at sites CMW, CTF, MGH, DVS, DNV, and DMU.  Sample IDs are found in the images.  Images are in .jpg format.
DOI: 10.5061/dryad.m466f/5
title: CBA6_distances

description: Pairwise genetic distances at locus CBA6 between the 579 samples that were analyzed.  These distances were calculated using the meandistance.matrix function in the R package "polysat" version 0.1, using the Bruvo.distance measure.  File contains a square matrix with row names and column names (sample names), as produced by the write.csv function in R version 2.11 under default parameters.
DOI: 10.5061/dryad.m466f/7
title: CBA14_distances

description: Pairwise genetic distances at locus CBA14 between the 579 individuals analyzed.  These distances were calculated using the meandistance.matrix function in the R package "polysat" version 0.1, using the Bruvo.distance measure.  Each file contains a square matrix with row names and column names (sample names), as produced by the write.csv function in R version 2.11 under default parameters.
DOI: 10.5061/dryad.m466f/8
title: CBA14_genotypes

description: Microsatellite genotypes for locus CBA14.  This is a tab-delimited text file in the format produced by Applied Biosystems GeneMapper software version 3.7.  Each sample*locus genotype is represented in one row.  The "Sample Name" column gives names of samples that directly correspond to those used in "species_chloroplast_latlong.csv".  The "Well" column indicates the location of the sample on the DNA dilution plates.  The "Marker" column indicates the microsatellite marker.  The "Panel" column indicates groups of markers that were run simultaneously on the ABI3100 capillary sequencer.  The "Dye" column indicates the fluorescent tag used to detect the PCR fragments: Y for NED, G for HEX, and B for FAM.  The "Allele" columns contain the names of all alleles detected for each genotype.  Cells are left blank if fewer alleles were detected than the number of columns.  A value of -9 for Allele 1 indicates missing data.  The "Height" columns indicate the height of the peak representing each allele, and the "Size" columns indicate the exact size of the DNA fragment as calculated by GeneMapper.  A value of "TRUE" in the "AE" column indicates that the genotype was manually edited in GeneMapper, although all genotypes were visually inspected.  The R package "polysat" can read these file directly, and will use the "Sample Name", "Marker", and "Allele" columns, and will ignore all other columns.
DOI: 10.5061/dryad.qd08b/1
title: LIG (Pleistocene) Occurrence Points

description: LIG occurrence data for each species. Note that these data were trimmed so that only one occurrence resides per environmental pixel. Please see Dataset S1 for information on the stratigraphic framework of the region and the formations from which these occurrences derive.
DOI: 10.5061/dryad.qd08b/2
title: mPWP (Pliocene) Occurrence Points

description: Pliocene occurrence data for species. Note that these data were trimmed so that only one occurrence resides per environmental pixel. Please see Dataset S1 for information on the stratigraphic framework of the region and the formations from which these occurrences derive.
DOI: 10.5061/dryad.qd08b/3
title: PI (Present) Occurrence Points

description: PI occurrence data for species. Note that these data were trimmed so that only one occurrence resides per environmental pixel.
DOI: 10.5061/dryad.qd08b/4
title: LIG Climate Layers

description: Climate layers for the LIG (~130–123 Ka) from the Hadley Climate Centre. Please see our publication for information on how GCM data were derived. Note that these layers have been clipped to the maximum study area extent.
DOI: 10.5061/dryad.qd734/1
title: Quémeneur et al. SOM 1

description: Excel file about taxa, lifestyle, section size, and bibliographic information.
DOI: 10.5061/dryad.qv4bt/1
title: BMJ Open
DOI: 10.5061/dryad.s4h7h/1
title: Supplementary Data

description: Selection and complementarity across the 25 multi-host assemblages. Species acronyms are: B. pitanga – PIT, I. parva – PAR, D. minutus – MIN, H. bandeirantes – BAN, S. hayii – HAY, H. phyllodes – PHY, and P. cuvieri – CUV.
DOI: 10.5061/dryad.sj6p8/1
title: Hydrocarbon Data

description: Proportion of hydrocarbon components for individuals of different species (individuals per species from the same location)
DOI: 10.5061/dryad.t01gt/1
title: Body mass in a captive population of Microcebus murinus

description: individual number, sex, photoperiod, cohort, mean log body mass/photoperiod
DOI: 10.5061/dryad.t01gt/2
title: Body mass in a natural population of Microcebus murinus

description: individual number, sex, cohort, date, log body mass
DOI: 10.5061/dryad.t66c7/5
title: Assembly_1762bp

description: 1762 bp mitochondrial sequences of the 47 haplotypes found from R. rattus samples collected in the Western Indian Ocean area
DOI: 10.7925/drs1.ucdlib_32037
title: 26 Wicklow Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32039
title: 27 Wicklow Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32041
title: 29 Anne Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground.
description: Dublin City Council, Record of Protected Structures (2010), no. 196
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32043
title: 29 Wicklow Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32045
title: 30 Wicklow Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork & stone structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32047
title: 31 Anne Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Rendered facade structure, 4 levels above ground.
description: Dublin City Council, Record of Protected Structures (2010), no. 198
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32049
title: 32 Wicklow Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32051
title: 33 Wicklow Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32053
title: 33 Anne Street South, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32055
title: 35 Wicklow Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.5061/dryad.1k1ns/5
title: Lp03-AWE genome (GenBank format)

description: GenBank formatted file derived from editing NC_002942 (Legionella pneumophila subsp. pneumophila str. Philadelphia 1). Lp03 is a dotA mutant, derived from a thymidine auxotroph, originally thought to be Lp02. This sequence reflects the genome of the Lp03 isolate in Alexander Ensminger's strain collection.
DOI: 10.5061/dryad.33d6c/1
title: diffrential growth data
DOI: 10.5061/dryad.365fj/1
title: FishData

description: See ReadMe file
DOI: 10.5061/dryad.39qf1/1
title: Simulated multilocus genotypes of Aedes mariae and Aedes zammitii

description: Simulated multilocus genotypes of Aedes mariae and Aedes zammitii for six allozymic loci. From multilocus genotypes of 100 individuals of Ae. mariae from Circeo and Scauri populations and 100 individuals of Ae. zammitii from Peschici and Baia dei Campi populations sampled in 1985, we simulated 1000 individuals of each of five genotypic class (parental Ae. mariae and Ae. zammitti, F1, F2 and first-generation backcrosses) using the software hybridlab version 1.0. z0s = Ae. zammitii from Peschici and Baia dei Campi populations; z1s = Ae. mariae from Circeo and Scauri populations.
DOI: 10.5061/dryad.48s53/3
title: Data from: Evolution at a different pace: Distinctive phylogenetic patterns of cone snails from two ancient oceanic archipelagos

description: S1- List of specimens of Conus guanche used in this study, sampling sites and island/country. Voucher numbers for Muséum National d'Histoire Naturelle specimens are included in the associated ReadMe (S1_dryad.48s53).  S2- Selected points for capturing the shape of the shell and each radular tooth of Conus guanche.  S4- Selected points for capturing the shape of each radular tooth of Conus guanche. (a) Average Pairwise Procrustes distances within groups of specimens of Conus guanche defined by locality, based on shell morphometry; (b) Pairwise Procrustes distances between groups defined by locality, based on shell morphometry of Conus guanche; (c) Average Pairwise Procrustes distances within groups of specimens of Conus guanche defined by locality, based on radula morphometry; (d) Pairwise Procrustes distances between groups defined by locality, based on radula morphometry of Conus guanche.  S6- Selected variables and their importance (in %) obtained with the Random Forests (RF) model used to evaluate their effect on Conus diversity. (a) worldwide; (b) along the West African coast.
DOI: 10.5061/dryad.48s53/4
title: Data from: Evolution at a different pace: Distinctive phylogenetic patterns of cone snails from two ancient oceanic archipelagos

description: (a) Canonical variate analysis (CVA) of the shape of the shell of 92 specimens from 6 populations of Conus guanche considering sample location (island/continent) as grouping factor. Deformation grids of the 2D scatter plots of the CVA are shown. CV1 represents the increase of the spire height with the concomitant ascent of the point markings the maximum width of the shells. CV2 represents the lowering of the spire height and the enlargement of the aperture of the shell;
DOI: 10.5061/dryad.48s53/5
title: Data from: Evolution at a different pace: Distinctive phylogenetic patterns of cone snails from two ancient oceanic archipelagos

description: (b) CVA of the shape of 84 radular teeth of 42 specimens from 6 populations of Conus guanche considering sample location as grouping factor. The 2D scatter plots of the CVA and the corresponding deformation grids are shown. CV1 represents the relative shortening of the radular tooth along the middle point of its axis. CV2 represents the shortening of the anterior portion and the increase of the width of the shaft of the radular tooth. The numbers in the shell and radular tooth represent landmarks and semilandmarks used in geometric morphometric analyses (see further details in Supplementary material_S2).
DOI: 10.5061/dryad.48s53/6
title: Data from: Evolution at a different pace: Distinctive phylogenetic patterns of cone snails from two ancient oceanic archipelagos

description: Phylogenetic relationships of Conus guanche based on Bayesian inference analysis of mitochondrial (NADH4 and 16S rRNA) and nuclear (internal transcriber spacer ITS1) sequence data using MRBAYES. Numbers above and below the nodes represent Bayesian posterior probabilities and ML bootstrap proportions, respectively.
DOI: 10.5061/dryad.48s53/7
title: Data from: Evolution at a different pace: Distinctive phylogenetic patterns of cone snails from two ancient oceanic archipelagos

description: Worldwide Conus diversity. Data from NatureServe and IUCN (International Union for Conservation of Nature) 2012. Cone snails. In: IUCN 2012. IUCN Red List of Threatened Species. Version 2013.2. http://www.iucnredlist.org. Downloaded on 05/03/2014.
DOI: 10.5061/dryad.48s53/8
title: Data from: Evolution at a different pace: Distinctive phylogenetic patterns of cone snails from two ancient oceanic archipelagos

description: Worldwide sea surface temperature variation. The scale represents temperature (ºC). Latitudes and longitudes are shown.
DOI: 10.5061/dryad.4c77r/1
title: Raw data for line cross analysis

description: Raw data includes 1)period of activity/rest rhythm, 2)adult emergence during morning and evening hours in progeny from 16 crosses set between early and late populations of fruit flies Drosophila melanogaster
DOI: 10.5061/dryad.4kt16/1
title: Sanger Sequence Data

description: Mitochondrial and nuclear loci in nexus format, with data partitioning.
DOI: 10.5061/dryad.4kt16/2
title: Sequence Capture Loci

description: Sequence capture loci (a.k.a. anchored phylogenomics data). The data are in Nexus format (partitioned).
DOI: 10.5061/dryad.4kt16/3
title: Hybrid Phylogeny

description: The final hybrid species tree for African Agama lizards (Newick format). The Sanger data (mtDNA and four nuclear genes) were used to estimate a time-calibrated species tree using *BEAST. This posterior distribution of species trees was then filtered using the anchored phylogenomics tree as a backbone constraint.
DOI: 10.5061/dryad.4kt16/4
title: Sequence Capture Gene Trees

description: Maximum likelihood (ML) trees for each sequence capture gene used for species tree analyses. ML analyses were run with RAxML.
DOI: 10.5061/dryad.58qt0/1
title: soil_chem_data
DOI: 10.5061/dryad.58qt0/2
title: bulk_density_data
DOI: 10.5061/dryad.58qt0/3
title: P_fraction_data
DOI: 10.5061/dryad.58qt0/4
title: P_sorption_data
DOI: 10.5061/dryad.7747n/1
title: GodaSharpWijnen2014Fig13S2S3S5TabS2S3

description: SPSS data file for the gene expression measures used for Figures 1,3,S2,S3,S5 and Tables S2,S3
DOI: 10.5061/dryad.7747n/2
title: GodaSharpWijnenFig2

description: Excel file containing the TopCount in vivo luciferase data plotted in Figure 2.
DOI: 10.5061/dryad.7747n/3
title: GodaSharpWijnen2014FigS1

description: SPSS data file containing the behavioural  measures quantified in Figure S1.
DOI: 10.5061/dryad.7m6kg/11
title: Fig 2d: ROM 60146 — Elemental distribution in eye and head of Nectocaris pteryx from the Burgess Shale