cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3843659
title: Anatomically Detailed Human Atrial FE Meshes

description: The left atrium (LA) has a complex anatomy with heterogeneous wall thickness and curvature. We include 3 patient-specific anatomical FE meshes with rule-based myofiber directions of each of the anatomies included in our study ("The impact of wall thickness and curvature on wall stress in patient-specific electromechanical models of the left atrium", BMMB, 2020, https://pubmed.ncbi.nlm.nih.gov/31802292/).<br> Additionally we include<br> - a model with Gaussian noise added (mean 0 um , standard deviation 100 um) to the initial geometry of patient case 3 and subsequently smoothed using ParaView; and <br> - a mesh with a constant wall thickness of 0.5 mm generated based on the endocardial surface of patient case 3. The meshes are given in VTK file format (.vtu) and in the binary format used for the Cardiac Arrhythmia Research Package simulator, see https://carpentry.medunigraz.at/carputils/index.html and https://opencarp.org. Here, for each of the geometries, we include a list of nodal coordinates (.bpts file), a list of triangular elements (.belem file), fiber fields (.blon file), surface files (*.surf files), and surface points (*.surf.vtx files).<br> Surface files include the endocardium (laendo.surf), the epicardium (laepi.surf), the mitral valve ring (mitralvv.surf), the pulmonary outlet rings (pulvring.surf) and lids (lid*.vtx) to close the five in- and outlets of the LA. Using the open source mesh utiliy "MeshTool" (https://bitbucket.org/aneic/meshtool/src/master/README.md)<br> meshes can be manipulated or converted to VTK or EnSight file formats.
DOI: 10.17632/gd55vkmyf5.1
title: A simple elemental sulfur reduction method for isotopic analysis and pilot experimental tests of symmetry-dependent sulfur isotope effects in planetary processes

description: Data of "A simple elemental sulfur reduction method for isotopic analysis and pilot experimental tests of symmetry-dependent sulfur isotope effects in planetary processes" in G-Cubed.
DOI: 10.5281/zenodo.3818195
title: Three-hourly gridded volcanic ash emissions for the Eyjafjallajökull 2010 eruption

description: Forward simulations of the Eyjafjälla 2010 eruption with unit emissions. These files are used to create an emission estimate of a volcanic eruption. Each file corresponds to an individual emission time point, and contains 19 individual emission simulations. Each emission simulation emits 1 teragram of ash into a unique vertical level of the model. The levels are labeled L01 .. L19, and designate level number from the top of the atmosphere (top of level 1 is close to 130 hPa or around 14 km ASL). The hybrid sigma levels are defined in Vertical_levels_22_650m.txt. The files were created using eEMEP Unimod_ASH compiled by Alvaro Valdebenito (module cams50/201809) on the Nebula supercomputer.
description: Data and products are licensed under Norwegian license for public data (NLOD) and Creative Commons 4.0 BY Internasjonal (see https://www.met.no/en/free-meteorological-data/Licensing-and-crediting for details). Credit should be given to The Norwegian Meteorological institute, shortened "MET Norway", as the source of data. Some suggestions: «Data from The Norwegian Meteorological Institute», «Based on data from MET Norway».
DOI: 10.5281/zenodo.3854866
title: Emissions changes in 2020 due to Covid19

description: Emissions and climate effects due to the COVID-19 response Monthly emission trends compared to EDGAR version 5 baseline https://edgar.jrc.ec.europa.eu/overview.php?v=50_GHG https://edgar.jrc.ec.europa.eu/overview.php?v=50_AP Funding was provided by the European Union’s Horizon 2020 Research and Innovation Programme under grant agreement nos. 820829 (CONSTRAIN)http://constrain-eu.org/ see https://github.com/Priestley-Centre/COVID19_emissions for more details Contact Piers Forster (p.m.forster@leeds.ac.uk) for more details. www.climate.leeds.ac.uk
DOI: 10.5281/zenodo.3855525
title: Eyjafjallajökull satellite observations

description: Satellite observations based on "Hourly non-gridded volcanic ash properties retrieved from SEVIRI measurements for the Eyjafjallajökull 2010 eruption" (Kylling and Sollum 2020, CC BY-SA 4.0, 10.5281/zenodo.3830363). The data has been regridded using fimex 1.4.2 to match the simulation domain MACC14 and thus be colocated with "Three-hourly gridded volcanic ash emissions for the Eyjafjallajökull 2010 eruption" (Brodtkorb et al., 2020, 10.5281/zenodo.3818196). These two datasets are used as input for the volcanic ash inversion routines in "metno/VolcanicAshInversion" (Brodtkorb, 2020, 10.5281/zenodo.3818001)
DOI: 10.17632/9tsgsczvyf.1
title: Impacts of Economic, Social, and Political Factors on Diffusion of Residential PV to Early Majority in Japan: Datasets

description: Balanced panel data archived in xls format. ********* Data source ******** Investment rate of PV: compiled from from Agency for Natural Resources and Energy & Statistics Bureau of Japan. FIT price: from Agency for Natural Resources and Energy. Electricity rate: from Handbook of Electric Power Industry (Vol. 2014 - Vol. 2019) RPVS cost: from Procurement Price Calculation Committee Solar radiation: from New Energy and Industrial Technology Development Organization Family income, Land price, Population aging and Household expenditure on energy: from Statistics Bureau of Japan
DOI: 10.17632/zv5vwdfn6r.2
title: Potential for melanoma diagnosis “over-calling” and “under-calling” from variation in histopathology interpretation

description: Background: Pathologist disagreement over the diagnosis of melanoma may harm individuals and healthcare systems. Objective: To estimate the population impact of pathology “over-calling” and “under-calling” of melanocytic lesions, and of potential solutions. Methods: We undertook simulations using published data on the prevalence and diagnostic accuracy of melanocytic histopathology in the US population. We simulated biopsy results for 10,000 patients and modelled the impact of an intervention to improve pathologist agreement on “over-calling” and “under-calling”, and of second community pathologist review. Results: For 10,000 individuals undergoing excision of one melanocytic lesion, interpreted by a community pathologist, a hypothetical intervention to improve histopathology agreement reduced the number of benign lesions “over-called” from 308 to 164 and the number of melanomas “under-called” from 289 to 240. If all uncertain diagnoses were sent for expert review, the number of referrals would decrease from 1,500 to 737 cases if formal second community pathologist was used, and to 701 cases if the hypothetical intervention was additionally used. Limitations: Hypothetical intervention. Decision thresholds to rule in or rule out melanoma may differ to those used. Conclusions: Interventions to improve histopathology agreement, and use of formal second community review, may reduce melanoma “over-calling” and “under-calling”.
DOI: 10.5281/zenodo.3768398
title: Identifying galaxies, quasars and stars with machine learning: a new catalogue of classifications for 111 million SDSS sources without spectra

description: The Paper: https://arxiv.org/abs/1909.10963 Abstract: We used 3.1 million spectroscopically labelled sources from the Sloan Digital Sky Survey (SDSS) to train an optimised random forest classifier using photometry from the SDSS and the Widefield Infrared Survey Explorer (WISE). We applied this machine learning model to 111 million previously unlabelled sources from the SDSS photometric catalogue which did not have existing spectroscopic observations. Our new catalogue contains 50.4 million galaxies, 2.1 million quasars, and 58.8 million stars. We provide individual classification probabilities for each source, with 6.7 million galaxies (13%), 0.33 million quasars (15%), and 41.3 million stars (70%) having classification probabilities greater than 0.99; and 35.1 million galaxies (70%), 0.72 million quasars (34%), and 54.7 million stars (93%) having classification probabilities greater than 0.9. Precision, Recall, and F1 score were determined as a function of selected features and magnitude error. We investigate the effect of class imbalance on our machine learning model and discuss the implications of transfer learning for populations of sources at fainter magnitudes than the training set. We used a non-linear dimension reduction technique (Uniform Manifold Approximation and Projection: UMAP) in unsupervised, semi-supervised, and fully-supervised schemes to visualise the separation of galaxies, quasars, and stars in a two-dimensional space. When applying this algorithm to the 111 million sources without spectra, it is in strong agreement with the class labels applied by our random forest model. When using this dataset, please reference our paper via the journal (https://arxiv.org/abs/1909.10963) and this DOI (10.5281/zenodo.3459293). If you make use of our scripts please reference our Github repository DOI (10.5281/zenodo.3855160). File descriptions: All of these files are Pandas Dataframes, saved as pickle files. df_spec_classprobs.pkl contains the spectroscopically observed sources used for training and testing. This has been cleaned, and has the results of the random forest classifier added as additional columns (sources used for training have NaNs in the class_pred column). SDSS-ML-all contains the 111 million photometrically observed sources, with our class labels and probabilities added. SDSS-ML-galaxies/quasars/stars is the same file broken up by assigned class for convenience.
DOI: 10.17632/z7typjdrz5.3
title: SWHC-001

description: SWHC004
DOI: 10.14459/2020mp1546390
title: Dynamic K-edge Subtraction Fluoroscopy at a Compact Inverse-Compton Synchrotron X-ray Source

description: Underlying data of a dynamic K-edge subtraction fluoroscopy study performed at the Munich Compact Light Source: X-ray projection images datasets of an ex vivo mouse. The dataset is related to the publication with the same name in the Journal Scientific Reports.
DOI: 10.5257/oecd/mei/2020-05
title: Main Economic Indicators (MEI) (May 2020 Edition)

description: The Main Economic Indicators database includes a wide range of areas from 1961, such as quarterly national accounts, business surveys, retail sales, industrial production, construction, consumer prices, total employment, unemployment rates, interest rates, money and domestic finance, foreign finance, foreign trade, and balance of payments for OECD countries and non-member economies.
DOI: 10.17632/mw24yzw4fg.2
title: Cerebrovascular Disease in COVID-19: Is There a Higher Risk of Stroke?

description: The presence of stroke is being observed in young adults (under 50 years of age) without cardiovascular risk factors suffering from COVID-19. It is speculated whether there is really a significant increase, as few cases have yet been described, or whether the infection actually favors their development. Cerebrovascular events were more common in older patients with stroke risk factors such as hypertension and diabetes mellitus, and those who had elevated fibrin D-dimers. Multiple cases reports and series about cerebrovascular disease in COVID-19 has been informed. The mechanism that causes cerebral ischemia in COVID-19 remains undiscovered, however, progressively there is increasing evidence of a hypercoagulable state that could be or contribute to the cause of cerebrovascular disease. We review the current literature about cerebrovascular disease, both epidemiology and etiology. More studies are needed to understand COVID-19 neuropathogenesis and the presence of stroke in this patient.
DOI: 10.17632/xsybdfc6fh.2
title: Video-on-Demand Tree Networks Instances

description: The tested data for Video-on-Demand Tree Networks
DOI: 10.5281/zenodo.3854258
title: Identifying required APIs for solving Open SourceSoftware issues

description: Data set to classify skills from a project in GitHub.
DOI: 10.5281/zenodo.3854259
title: Identifying required APIs for solving Open SourceSoftware issues

description: Data set to classify skills from a project in GitHub.
DOI: 10.17632/nkxrr4smj3.2
title: Archaeological ash deposits and soils formed on ash in the south of the East European Plain

description: Sampling ash deposits (A) and soils formed on ash (S) in the south of the East European Plain was carried out in each of the soil-stratigraphic sections at archaeological sites of different ages (Fig. S1). Stratigraphic columns with ash deposits and soils formed on them are presented in supplementary materials (Fig. S2–S4). Location of research objects (ash soil and ash deposits) within the continental forest-steppe, Belgorod Oblast (A) and within the Plain (steppe) and Piedmont (forest-steppe) Crimea (B). Archaeological sites: Borisovka, mid-5th c. (1); Chernomorskoe, Bronze Age and Early Iron Age settlement (2); Kunan, 2nd c. BC (3); Airchi, 2nd c. BC – 1st c. AD (4); Kalos Limen, 1st c. BC – 1st c. AD (5); Former village of Saya, before 1944 (6); Former village of Oirat, before 1944 (7); Borut-Khane, 1st c. BC – 1st c. AD (8); Ak-Kaya, 350–325 AD (9); Zayachye, 3rd – 2nd c. AD (10); Kermen-Kyr, 3rd – 2nd c. AD (11). Stratigraphic columns with ash deposits and soils formed at archaeological sites of different ages.
DOI: 10.21227/rg6z-z622
title: Botnet DGA Dataset

description: BotnetDgaDataset.csv is the dataset used in "Computable CTI: Sharing AI Model for the Next Level of Actionable Cyber Threat Intelligence. Case Study of Botnet Detection", IEEE Open Access Journal, 2020
DOI: 10.5281/zenodo.3853458
title: Daftar Tokoh Militer Indonesia

description: Dataset Daftar Tokoh Militer Indonesia dan Sparql Query
DOI: 10.17632/ny945rfh3t.2
title: Adenopathy and extensive skin patch overlying a plasmacytoma (AESOP): two morphological variants can be outlined. Supplemental Data.
DOI: 10.17632/ny945rfh3t.3
title: Adenopathy and extensive skin patch overlying a plasmacytoma (AESOP): two morphological variants can be outlined. Supplemental Data.
DOI: 10.21227/1546-k926
title: Botnet DGA Dataset

description: BotnetDgaDataset.csv is the dataset used in "Computable CTI: Sharing AI Model for the Next Level of Actionable Cyber Threat Intelligence. Case Study of Botnet Detection", IEEE Open Access Journal, 2020
DOI: 10.21227/4efq-9649
title: The performance of image quality measures and spatial frequency information for visual complexity assessment

description: The dataset consists of subjective evaluations of 44 naive observers judging the visual complexity of 16 images. The subjective judgments were done using a 5-point Likert-type scale with a neutral midpoint. The items in the scale were “very complex,” “complex,” “medium,” “simple,” and “very simple.” The order of the images was randomized for every participant.Spatial complexity properties of the images used in the experiment are quantified using nine spatial complexity measures: GIF, JPEG, root-mean-squared error, fractal D, entropy, spatial frequency information slope, suprathreshold detectability Rspt, and edge detection algorithms (Canny-GIF and Sobel-GIF).
DOI: 10.21227/myyb-mg70
title: The performance of image quality measures and spatial frequency information for visual complexity assessment

description: The dataset consists of subjective evaluations of 44 naive observers judging the visual complexity of 16 images. The subjective judgments were done using a 5-point Likert-type scale with a neutral midpoint. The items in the scale were “very complex,” “complex,” “medium,” “simple,” and “very simple.” The order of the images was randomized for every participant.Spatial complexity properties of the images used in the experiment are quantified using nine spatial complexity measures: GIF, JPEG, root-mean-squared error, fractal D, entropy, spatial frequency information slope, suprathreshold detectability Rspt, and edge detection algorithms (Canny-GIF and Sobel-GIF).
DOI: 10.17632/9tsgsczvyf.2
title: Impacts of Economic, Social, and Political Factors on Diffusion of Residential PV to Early Majority in Japan: Datasets

description: Balanced panel data archived in xls format. ********* Data source ******** Investment rate of PV: compiled from from Agency for Natural Resources and Energy & Statistics Bureau of Japan. FIT price: from Agency for Natural Resources and Energy. Electricity rate: from Handbook of Electric Power Industry (Vol. 2014 - Vol. 2019) RPVS cost: from Procurement Price Calculation Committee Solar radiation: from New Energy and Industrial Technology Development Organization Family income, Land price, Population aging and Household expenditure on energy: from Statistics Bureau of Japan
DOI: 10.5281/zenodo.3836541
title: Data for "Second Critical Point in Two Realistic Models of Water"

description: Data associated to the publication "Second Critical Point in Two Realistic Models of Water" to appear in Science in 2020. e-rho-2005.tgz files with potential energy and density for the model TIP4P-2005 (N=300,500,1000) e-rho-tip4pice.tgz files with potential energy and density for the model TIP4P-Ice (N=300,500,1000) sk-dat.tgz files with the structure factor for TIP4P-2005 (N=36424) and TIP4P-Ice (N=10000) mdp-gro-top-2005.tgz input files for all studied state point in GROMACS format for TIP4P-2005 (mdp, gro, top) (N=300,500,1000) mdp-gro-top-Ice.tgz input files for all studied state point in GROMACS format for TIP4P-Ice (mdp, gro, top) (N=300,500,1000) large-systems.tgz input files for all studied state point in GROMACS format for TIP4P-Ice (N=10000) and TIP4P-2005 (N=36424)
DOI: 10.5281/zenodo.3836542
title: Data for "Second Critical Point in Two Realistic Models of Water"

description: Data associated to the publication "Second Critical Point in Two Realistic Models of Water" to appear in Science in 2020. e-rho-2005.tgz files with potential energy and density for the model TIP4P-2005 (N=300,500,1000) e-rho-tip4pice.tgz files with potential energy and density for the model TIP4P-Ice (N=300,500,1000) sk-dat.tgz files with the structure factor for TIP4P-2005 (N=36424) and TIP4P-Ice (N=10000) mdp-gro-top-2005.tgz input files for all studied state point in GROMACS format for TIP4P-2005 (mdp, gro, top) (N=300,500,1000) mdp-gro-top-Ice.tgz input files for all studied state point in GROMACS format for TIP4P-Ice (mdp, gro, top) (N=300,500,1000) large-systems.tgz input files for all studied state point in GROMACS format for TIP4P-Ice (N=10000) and TIP4P-2005 (N=36424)
DOI: 10.17632/fx55b47hj8.1
title: Transglutaminase 2 Depletion Attenuates α-Synuclein Mediated Toxicity in Mice

description: α-Synuclein (α-Syn) is a key pathogenic protein in α-synucleinopathies including Parkinson disease (PD) and Dementia with Lewy Bodies. The aggregation of α-Syn is believed to be deleterious and a critical step leading to neuronal dysfunction and death. One of the factors that may contribute to the initial steps of this aggregation is crosslinking through transglutaminase 2 (TG2). We previously demonstrated that overexpression of TG2 exacerbates α-Syn toxicity in mice and yeast by increasing the higher-order species of α-Syn.Herein, we investigated whether deletion of the TG2 encoding gene could mitigate the toxicity of α-Syn in vivo. Compared with α-Syn transgenic (SynTg) mice, TG2 null / α-Syn transgenic mice (TG2KO/SynTg) exhibited a reduced amount of phosphorylated α-Syn aggregates and fewer proteinase K-resistant α-Syn aggregates in sections of brain tissue. Neuritic processes that are depleted in SynTg mice compared to wild-type mice were preserved in double TG2KO/SynTg mice. Additionally, the neuroinflammatory reaction to α-Syn was attenuated in TG2KO/SynTg animals. These neuropathological markers of diminished α-Syn toxicity in the absence of TG2 were associated with better motor performance on the rotarod and balance beam. These results suggest that deleting TG2 reduces the toxicity of α-Syn in vivo and improves the behavioral performance of SynTg mice. Accordingly, these findings collectively support pharmacological inhibition of TG2 as a potential disease modifying therapeutic strategy for α-synucleinopathies.
DOI: 10.17632/6z6jxx946j.1
title: Data for: Social distancing legal measures: a comparison of state and state capital policies in Brazil

description: This index measures the strictness of social distancing policies in each of the 27 Brazilian states. This index is composed of six variables, measuring: i) whether mass gatherings, as well as cultural, sports or religious activities are suspended; ii) whether bars, pubs, restaurants and similar places are closed; iii) whether non-essential shops are closed; iv) whether non-essential industries are closed; v) whether classes are suspended; and vi) whether there are restrictions on passenger transportation. For each of these variables, values of 2, 1 or 0 were assigned depending on whether suspension or restriction was total, partial or non-existent. As the sum of the values would vary between 0 and 12 (as there are six variables), the index values were adjusted to be between 0 and 10 (a more intuitive scale), in which 10 are cases of greatest restrictions. Each of these variables represents a type of gathering: if these activities were all suspended, the aggregate effect would be a broad restriction. Information used to code values of these variables comes from open sources, especially legal documents from state governments, complemented by news from local media.
DOI: 10.17632/k8t5z6ys3y.3
title: Osteometric measurements of the radius in the Coimbra Identified Skeletal Collection
DOI: 10.17632/5gmhm9cc6d.1
title: SeGa4Biz: Model-Driven Framework for Developing Serious Games for Business Processes

description: This data set contains the source files of the SeGa4Biz framework including metamodels, model instances, and transformation rules.
DOI: 10.17632/5gmhm9cc6d.2
title: SeGa4Biz: Model-Driven Framework for Developing Serious Games for Business Processes

description: This data set contains the source files of the SeGa4Biz framework including metamodels, model instances, and transformation rules.
DOI: 10.5281/zenodo.3855275
title: listEvent Protokolle des Gemeinsamen Ministerrates 1867-1918

description: An event based table of contents for the protocols of the Austro-Hungarian Monarchy's joint ministerial council, modeled in TEI XML. Based on the Tables of Content of the volumes: Band I/1: 1867-1870, bearbeitet von Éva Somogyi (Budapest 1999) Band I/2: 1870-1871, bearbeitet von Éva Somogyi (Budapest 2011) Band IV: 1883-1895, bearbeitet von István Diószegi (Budapest 1993) Band V: 1896-1907, bearbeitet von Éva Somogyi (Budapest 1991) Band VI: 1908-1914, bearbeitet von Anatol Schmied-Kowarzik (Budapest 2011) Band VII: 1914-1918, bearbeitet von Miklós Komjáthy (Budapest 1966) Each entry consists of a nested `event` structure with a surrounding session event and 1-n agenda_item events, each with an xml:id and a corresponding PDF link. Example: <pre><code class="language-xml">&lt;event xml:id="MRP-2-0-01-1-18680110-P-0002" corresp="https://hw.oeaw.ac.at/ministerrat/serie-2/oe_hu_mrp_I1/pdf/oe_hu_mrp_I1_z2.pdf" when="1868-01-10" type="session"&gt; &lt;head&gt;Gemeinsamer Ministerrat, 10. 1. 1868&lt;/head&gt; &lt;label/&gt; &lt;desc&gt; &lt;listEvent type="agenda_items"&gt; &lt;event type="agenda_item" ref="_top_02" xml:id="MRP-2-0-01-1-18680110-P-0002_top_02" corresp="https://hw.oeaw.ac.at/ministerrat/serie-2/oe_hu_mrp_I1/pdf/oe_hu_mrp_I1_z2.pdf#page=6" n="II"&gt; &lt;label&gt;Bezüglich des Zeremoniells bei Eröffnung der Beratungen der Delegation&lt;/label&gt; &lt;/event&gt; &lt;event type="agenda_item" ref="_top_01" xml:id="MRP-2-0-01-1-18680110-P-0002_top_01" corresp="https://hw.oeaw.ac.at/ministerrat/serie-2/oe_hu_mrp_I1/pdf/oe_hu_mrp_I1_z2.pdf" n="I"&gt; &lt;label&gt;Militärbudget&lt;/label&gt; &lt;/event&gt; &lt;/listEvent&gt; &lt;/desc&gt; &lt;/event&gt;</code></pre> The list is used for generating an overview of the council's dealings in a calendar view of the Ministerratsprotokolle digital edition at https://mrp.oeaw.ac.at/.