cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18248686
title: Berberis ruscifolia Lam. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:43
DOI: 10.5281/zenodo.18248685
title: Berberis ruscifolia Lam. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:43
DOI: 10.15468/dl.uz3nby
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_2_GID","value":"USA.37.50_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 20 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009689-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pk44r9
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alburnus alburnus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1860",
 "Year is less than or equal to 1864"
 ]
}

 The dataset includes 20 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009690-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dw7sn6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_2_GID","value":"IND.29.27_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009691-260108223611665/datasets/export for details.
DOI: 10.5281/zenodo.18246373
title: Refining classification of complex agroforestry mosaic landscape from drone-based imagery: Implications for landscape management and conservation.

description: Data associated with research article, "Refining classification of complex agroforestry mosaic landscape from drone-based imagery: Implications for landscape management and conservation", published in the Journal of Applied Ecology.
DOI: 10.5281/zenodo.18246374
title: Refining classification of complex agroforestry mosaic landscape from drone-based imagery: Implications for landscape management and conservation.

description: Data associated with research article, "Refining classification of complex agroforestry mosaic landscape from drone-based imagery: Implications for landscape management and conservation", published in the Journal of Applied Ecology.
DOI: 10.14288/1.0319902
title: Crete. 1:125,000 scale. 50m contour interval

description: Crete (Greece) 50m contour interval. Includes roads and places of interest. Coordinate system: GCS European 1950. Projection: Albers Equal Area Conic.
DOI: 10.14288/1.0363903
title: A cross-laboratory comparison of expression profiling data from normal human postmortem brain

description: Expression profiling of post-mortem human brain tissue has been widely used to study molecular changes associated with neuropsychiatric diseases as well as normal processes such as aging. Changes in expression associated with factors such as age, gender or postmortem interval are often more pronounced than changes associated with disease. Therefore in addition to being of interest in their own right, careful consideration of these effects are important in the interpretation of disease studies. We performed a large meta-analysis of genome-wide expression studies of normal human cortex to more fully catalogue the effects of age, gender, postmortem interval and brain pH, yielding a "meta-signature" of gene expression changes for each factor. We validated our results by showing a significant overlap with independent gene lists extracted from the literature. Importantly, meta-analysis identifies genes which are not significant in any individual study. Finally, we show that many schizophrenia candidate genes appear in the meta-signatures, reinforcing the idea that studies must be carefully controlled for interactions between these factors and disease. In addition to the inherent value of the meta-signatures, our results provide critical information for future studies of disease effects in the human brain.
DOI: 10.14288/1.0319870
title: Dataset on land-use history, tree biodiversity, and soil characteristics in a shifting cultivation system in the Peruvian Amazon

description: This dataset provides fallow management, soil, and biodiversity metrics, and tree species community composition data for sampled fallows (n=47) and one primary forest stand in the community of San Jose [pseudonym] in the Peruvian Amazon from 2011. Management metrics were calculated from collected oral land use histories and air photo interpretation. Vegetation metrics were calculated from sampled vegetation plots in fallows 3-20 years of age and rarefied to common number of stems (n = 120). Fallow soils were collected and analyzed at La Molina University in Lima, Peru and adjusted for bulk density. Tree species data were collected for all stems &gt; 2cm in sampled fallow vegetation plots. The dataset includes site level data on proportional break down of functional traits based on the relative proportion of stems per site; relative location of a site from Primary forest and village centre; time period since isolation; and measured soil properties adjusted for measured bulk density.
DOI: 10.14288/1.0319897
title: Vancouver's Old Streams, 1880-1920

description: Paths of streams in Vancouver from 1880-1920 and the original shoreline of Vancouver, BC, Canada. Data in ESRI shapefile format and Google Earth KMZ format. Original map available as georeferenced colour TIFF.
DOI: 10.14288/1.0319898
title: [Canada's Economic Action Plan], [July 2011]

description: Snapshot of data on Canada's Economic Action Plan (http://www.actionplan.gc.ca) from July 2011. The data contain latitude/longitude points, descriptions, federal funding values and links to project websites and images.
DOI: 10.14288/1.0363892
title: The role of indirect connections in gene networks in predicting function

description: &lt;p&gt;MOTIVATION:&lt;br&gt; Gene networks have been used widely in gene function prediction algorithms, many based on complex extensions of the 'guilt by association' principle. We sought to provide a unified explanation for the performance of gene function prediction algorithms in exploiting network structure and thereby simplify future analysis.&lt;p&gt; &lt;p&gt;RESULTS:&lt;br&gt; We use co-expression networks to show that most exploited network structure simply reconstructs the original correlation matrices from which the co-expression network was obtained. We show the same principle works in predicting gene function in protein interaction networks and that these methods perform comparably to much more sophisticated gene function prediction algorithms.&lt;p&gt; &lt;p&gt;AVAILABILITY AND IMPLEMENTATION:&lt;br&gt; Data and algorithm implementation are fully described and available at http://www.chibi.ubc.ca/extended. Programs are provided in Matlab m-code.&lt;p&gt; &lt;p&gt;CONTACT:&lt;br&gt; paul@chibi.ubc.ca&lt;p&gt;
DOI: 10.14288/1.0363899
title: Replication data for: Relationships between gene expression and brain wiring in the adult rodent brain

description: We studied the global relationship between gene expression and neuroanatomical connectivity in the adult rodent brain. We utilized a large data set of the rat brain "connectome" from the Brain Architecture Management System (942 brain regions and over 5000 connections) and used statistical approaches to relate the data to the gene expression signatures of 17,530 genes in 142 anatomical regions from the Allen Brain Atlas. Our analysis shows that adult gene expression signatures have a statistically significant relationship to connectivity. In particular, brain regions that have similar expression profiles tend to have similar connectivity profiles, and this effect is not entirely attributable to spatial correlations. In addition, brain regions which are connected have more similar expression patterns. Using a simple optimization approach, we identified a set of genes most correlated with neuroanatomical connectivity, and find that this set is enriched for genes involved in neuronal development and axon guidance. A number of the genes have been implicated in neurodevelopmental disorders such as autistic spectrum disorder. Our results have the potential to shed light on the role of gene expression patterns in influencing neuronal activity and connectivity, with potential applications to our understanding of brain disorders. Supplementary data are available at http://www.chibi.ubc.ca/ABAMS.
DOI: 10.14288/1.0363904
title: Large-Scale Analysis of Gene Expression and Connectivity in the Rodent Brain: Insights through Data Integration

description: Recent research in C. elegans and the rodent has identified correlations between gene expression and connectivity. Here we extend this type of approach to examine complex patterns of gene expression in the rodent brain in the context of regional brain connectivity and differences in cellular populations. Using multiple large-scale data sets obtained from public sources, we identified two novel patterns of mouse brain gene expression showing a strong degree of anti-correlation, and relate this to multiple data modalities including macroscale connectivity. We found that these signatures are associated with differences in expression of neuronal and oligodendrocyte markers, suggesting they reflect regional differences in cellular populations. We also find that the expression level of these genes is correlated with connectivity degree, with regions expressing the neuron-enriched pattern having more incoming and outgoing connections with other regions. Our results exemplify what is possible when increasingly detailed large-scale cell- and gene-level data sets are integrated with connectivity data.
DOI: 10.15468/dl.3642rk
title: Occurrence Download

description: A dataset containing 6809 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is one of (iNaturalist Research-grade Observations, Pl@ntNet observations, Pl@ntNet automatically identified occurrences)",
 "Geometry POLYGON((-81.44317 42.97990,-77.92604 42.97990,-77.92604 44.38615,-81.44317 44.38615,-81.44317 42.97990))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (28eb1a3f-1c15-4a95-931a-4af90ecb574d, da86174a-a605-43a4-a5e8-53d484152cd3)",
 "TaxonKey is Asclepias syriaca L."
 ]
}

 The dataset includes 6809 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000450-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14288/1.0363909
title: The Impact of Multifunctional Genes on "Guilt by Association" Analysis

description: Many previous studies have shown that by using variants of "guilt-by-association", gene function predictions can be made with very high statistical confidence. In these studies, it is assumed that the "associations" in the data (e.g., protein interaction partners) of a gene are necessary in establishing "guilt". In this paper we show that multifunctionality, rather than association, is a primary driver of gene function prediction. We first show that knowledge of the degree of multifunctionality alone can produce astonishingly strong performance when used as a predictor of gene function. We then demonstrate how multifunctionality is encoded in gene interaction data (such as protein interactions and coexpression networks) and how this can feed forward into gene function prediction algorithms. We find that high-quality gene function predictions can be made using data that possesses no information on which gene interacts with which. By examining a wide range of networks from mouse, human and yeast, as well as multiple prediction methods and evaluation metrics, we provide evidence that this problem is pervasive and does not reflect the failings of any particular algorithm or data type. We propose computational controls that can be used to provide more meaningful control when estimating gene function prediction performance. We suggest that this source of bias due to multifunctionality is important to control for, with widespread implications for the interpretation of genomics studies.
DOI: 10.14288/1.0373461
title: Replication data for: A comparison of forest dynamics in old-growth and second growth coastal temperate rainforests on Grappler Peninsula, Bamfield, British Columbia

description: Trees in the one-hectare SI/MAB second growth and EMAN old growth plots were recensused May 30 to June 10, 2011. Bird species were identified by auditory and visual surveys June 3 to June 6, 2011. &lt;p/&gt; Both plots are located on the north side of Grappler Inlet near Bamfield, British Columbia on property owned and administered by the Bamfield Marine Sciences Centre. The centre of the SI/MAB plot has GPS coordinates 48°50’19.00”N, 125°08’02.00”W (48.83861111, -125.13388889), and the centre of the EMAN plot has GPS coordinates 48°50’05.00”N, 125°07’45.00”W (48.83472222, -125.12916667). &lt;p/&gt; Both plots are divided into 25 quadrats (20m x 20m). SI/MAB quadrats 1 and 2 were eliminated from the study due to the unsafe slope of the cliff. Live and dead standing trees with a DBH (diameter at breast height) ≥ 8 cm were censused for species, DBH, status (physical condition) and tree health. &lt;p/&gt; Auditory and visual surveys were done in both plots to determine bird presence and call frequencies of nesting and breeding species. &lt;p/&gt; Data was collected by students in the Coastal Biodiversity and Conservation course taught by Dr. Barb Beasley and Dr. Wendy Palen May 2-June 10, 2011 with Teaching Assistant Dane Stabel.
DOI: 10.14288/1.0319860
title: Canadian Forces Bases, 2012

description: This dataset represents the location of Canadian Forces military bases within Canada. The points are located within the military base boundaries, but do not represent any specific point within the bases. Garrisons and other auxiliary facilities are not included.
DOI: 10.14288/1.0319861
title: Birth weight and economic growth data sets, Boston Lying-in (outpatient services), 1883-1900, [2012]

description: The variables contained in the data sets are primarily concerned with perinatal outcomes and maternal health. A number of variables with respect to the social and economic status of the mothers and their families were also included (ie. Occupation, Marital status, Region). While all nine data sets are centered around these common themes and hold many variables in common, each data set has a unique combination of variables. The types of fields are wide-ranging but are primarily concerned with infant birth, maternal health, and socioeconomic status. The clinical records of the Boston Lying-in inpatient and outpatient services, and those of the New England Hospital maternity unit, are housed in the Rare Book Room, Francis A. Countway Library of Medicine, Harvard University, Boston, Massachusetts. While the information found in these records varied somewhat from one hospital to the next, each set of records was consistent throughout the period under review. Four data bases were established, one consisting exclusively of white patients for each of the three clinics and one composed of all black patients from both services of the Boston Lying-in. The four sample populations were constituted in the following ways. The clinical records of the New England Hospital’s maternity clinic exist in continuous series from 1872 to 1900. All births were recorded because there were fewer than 200 deliveries annually. The patient registers of the Boston Lying-in inpatient service span the years 1886-1900, with a gap in 1893 and 1894. A random sample of 200 cases was chosen for each year. The same procedure was followed at the outpatient clinic, whose case files extend from 1884 to 1900, excepting those years in which all were recorded because fewer births occurred, and a short period when all cases were noted even though they totaled more than 200. Because the number of black patients was small, and because the birth weight experience of blacks was distinctive in some important respects, a fourth file was created consisting of all blacks in the Lying-in inpatient and outpatient records. The preliminary data bases consisted of 3480, 2503, 3654, and 373 cases, respectively. The birth weight means in the Lying-in inpatient sample are accurate to 79 grams, and those of the outpatient clinic sample to 65 grams, at the 95 percent confidence level.
DOI: 10.14288/1.0319864
title: Birth weight and economic growth data sets, Boston Lying-in (inpatient services), 1886-1900, [2012]

description: The variables contained in the data sets are primarily concerned with perinatal outcomes and maternal health. A number of variables with respect to the social and economic status of the mothers and their families were also included (ie. Occupation, Marital status, Region). While all nine data sets are centered around these common themes and hold many variables in common, each data set has a unique combination of variables. The types of fields are wide-ranging but are primarily concerned with infant birth, maternal health, and socioeconomic status. The clinical records of the Boston Lying-in inpatient and outpatient services, and those of the New England Hospital maternity unit, are housed in the Rare Book Room, Francis A. Countway Library of Medicine, Harvard University, Boston, Massachusetts. While the information found in these records varied somewhat from one hospital to the next, each set of records was consistent throughout the period under review. Four data bases were established, one consisting exclusively of white patients for each of the three clinics and one composed of all black patients from both services of the Boston Lying-in. The four sample populations were constituted in the following ways. The clinical records of the New England Hospital’s maternity clinic exist in continuous series from 1872 to 1900. All births were recorded because there were fewer than 200 deliveries annually. The patient registers of the Boston Lying-in inpatient service span the years 1886-1900, with a gap in 1893 and 1894. A random sample of 200 cases was chosen for each year. The same procedure was followed at the outpatient clinic, whose case files extend from 1884 to 1900, excepting those years in which all were recorded because fewer births occurred, and a short period when all cases were noted even though they totaled more than 200. Because the number of black patients was small, and because the birth weight experience of blacks was distinctive in some important respects, a fourth file was created consisting of all blacks in the Lying-in inpatient and outpatient records. The preliminary data bases consisted of 3480, 2503, 3654, and 373 cases, respectively. The birth weight means in the Lying-in inpatient sample are accurate to 79 grams, and those of the outpatient clinic sample to 65 grams, at the 95 percent confidence level.
DOI: 10.14288/1.0319876
title: Birth weight and economic growth data sets, New England Hospital for Women and Children, Boston, 1872-1900, [2012]

description: The variables contained in the data sets are primarily concerned with perinatal outcomes and maternal health. A number of variables with respect to the social and economic status of the mothers and their families were also included (ie. Occupation, Marital status, Region). While all nine data sets are centered around these common themes and hold many variables in common, each data set has a unique combination of variables. The types of fields are wide-ranging but are primarily concerned with infant birth, maternal health, and socioeconomic status. The clinical records of the Boston Lying-in inpatient and outpatient services, and those of the New England Hospital maternity unit, are housed in the Rare Book Room, Francis A. Countway Library of Medicine, Harvard University, Boston, Massachusetts. While the information found in these records varied somewhat from one hospital to the next, each set of records was consistent throughout the period under review. Four data bases were established, one consisting exclusively of white patients for each of the three clinics and one composed of all black patients from both services of the Boston Lying-in. The four sample populations were constituted in the following ways. The clinical records of the New England Hospital’s maternity clinic exist in continuous series from 1872 to 1900. All births were recorded because there were fewer than 200 deliveries annually. The patient registers of the Boston Lying-in inpatient service span the years 1886-1900, with a gap in 1893 and 1894. A random sample of 200 cases was chosen for each year. The same procedure was followed at the outpatient clinic, whose case files extend from 1884 to 1900, excepting those years in which all were recorded because fewer births occurred, and a short period when all cases were noted even though they totaled more than 200. Because the number of black patients was small, and because the birth weight experience of blacks was distinctive in some important respects, a fourth file was created consisting of all blacks in the Lying-in inpatient and outpatient records. The preliminary data bases consisted of 3480, 2503, 3654, and 373 cases, respectively. The birth weight means in the Lying-in inpatient sample are accurate to 79 grams, and those of the outpatient clinic sample to 65 grams, at the 95 percent confidence level.
DOI: 10.14288/1.0319877
title: BC Transit Routes for Victoria, Whistler, Pemberton, Squamish and Kelowna, 10 February 2012

description: BC Transit routes for Victoria, Whistler, Pemberton Local and Commuter, Squamish Commuter and Kelowna. The routes were created from the Google transit feed (GTFS) and ArcGIS Network Analyst. As no route shape information was available from the feed, the shape of the route was extrapolated from the road network and layout of transit stops. The transit routes were not verified as no maps are available. Although routes were calculated as carefully as possible, this data set carries no guarantee of accuracy beyond the information included in the Google transit feed.