cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.qc06fq7/1
title: Clinical characteristics, demographics, and medication use of patients initiated on PCSK9 inhibitors.

description: Danish register based data regarding patient demographics, comorbidities, coronary procedures, and concurrent medication use identified using cross-linkage between three different nationwide Danish registers: The Civil Registration System; The Danish National Patient Register; The Danish Registry of Medicinal Product Statistics.
DOI: 10.5061/dryad.qc06fq7/2
title: Clinical characteristics, demographics, and medication use by number of lipid lowering drugs prescribed prior to initiation of PCSK9 inhibitors

description: Danish register based data regarding patient demographics, comorbidities, coronary procedures, and concurrent medication use identified using cross-linkage between three different nationwide Danish registers: The Civil Registration System; The Danish National Patient Register; The Danish Registry of Medicinal Product Statistics.
DOI: 10.5061/dryad.r01cq00/1
title: IndiscriminateAltruismDatasets

description: A .zip file containing all datasets used for these analyses and the R code used for the modelling sections. Please be aware all individual and group identifiers have been randomised, whilst integrity within a dataset has been maintained, the identifiers are not compatible between the datasets of this paper or with datasets from other papers published with the Meerkat Project Data. Should you wish to access the data reasons other than repeatability testing please contact a PI working at the project.
DOI: 10.5061/dryad.rr137kn/1
title: F0-F60 sync file, CMH and FET pvalues, haplotype block IDs
DOI: 10.5061/dryad.rr137kn/2
title: phenotypic data
DOI: 10.5061/dryad.rr137kn/3
title: Jaccard indices
DOI: 10.5061/dryad.rr137kn/4
title: replicate frequency spectrum
DOI: 10.5061/dryad.rr137kn/5
title: TE insertions and frequencies at F60

description: This file contains the frequency of TE insertions in 10 hot-evolved replicates at generation 60. Format specification of this file can be found in manual of PopoolationTE2 (Kofler R, Gomez-Sanchez D, Schlötterer C. PoPoolationTE2: Comparative Population Genomics of Transposable Elements Using Pool-Seq. Mol Biol Evol. 2016;33(10):2759–64.). 
Column 1: 1-10 since it’s a joint analysis of 10 replicates, column 2: chromosome, column3 : position, column 4: strand of the TE insertion; plus (sense), minus (antisense) or point (unknown), column 5: TE family, column 6: order, column 7: support for the TE insertions; either a single forward signature (F) or a single reverse signature (R) or a matching pair of forward and reverse signatures (FR), column 8: comment (empty or "-" in newer versions), column 9-18: the population frequency of the TE in replicate 1 to 10 respectively.
DOI: 10.5061/dryad.rr137kn/6
title: evolved haplotypes
DOI: 10.5061/dryad.rv6088k/2
title: Plos one data
DOI: 10.5061/dryad.sd8dp40/1
title: TelomereCode

description: .R code for analyses conducted in manuscript
DOI: 10.5061/dryad.sd8dp40/2
title: Degradation

description: .csv file with data for analysis of telomere degradation over time (ie., number of years sample was stored).
DOI: 10.5061/dryad.sd8dp40/3
title: FinalNestAge

description: .csv file with all data for analyzing correlations of annual reproductive output, reproductive success, and age with seasonal nest initiation date.
DOI: 10.5061/dryad.sd8dp40/4
title: FinalTeloCode

description: .csv file with all data for analyzing correlations of seasonal nest initiation, temperature, annual reproductive output, and reproductive success with change in telomere length.
DOI: 10.5061/dryad.sd8dp40/5
title: Repeatability

description: .csv file with all data for analyzing repeatability of T/S ratio.
DOI: 10.5061/dryad.sd8dp40/6
title: DataColumnDescriptors

description: Short description of column titles in each .csv file.
DOI: 10.5061/dryad.sj6mf40/2
title: MiSeq raw sequences of the COI minibarcode from 1113 moth field samples (part 2)

description: This ZIP file contains the FASTQ files of the paired-end reads (R1: reads 1; R2: reads 2) produced for each moth field samples in triplicate using the MiSeq platform
DOI: 10.5061/dryad.sj6mf40/3
title: MiSeq raw sequences of the COI minibarcode from 114 DNA dilution test samples

description: This ZIP file contains the FASTQ files of the paired-end reads (R1: reads 1; R2: reads 2) produced for each DNA dilution in triplicate using the MiSeq platform
DOI: 10.5061/dryad.t50q216/19
title: PsLysozyme c3

description: Relative expression level to L32 (fig.S11e).
DOI: 10.5061/dryad.t50q216/20
title: PsLysozyme i1

description: Relative expression level to L32 (fig.S11f).
DOI: 10.5061/dryad.t50q216/21
title: PsDefensin1 pathwayRNAi and Ec

description: Relative expression level to L32 (fig. 4a).
DOI: 10.5061/dryad.t50q216/22
title: PsDefensin1 pathwayRNAi and Ml

description: Relative expression level to L32 (fig. 4b).
DOI: 10.5061/dryad.t50q216/23
title: PsDefensin2 pathwayRNAi and Ec

description: Relative expression level to L32 (fig. 4c).
DOI: 10.5061/dryad.t50q216/24
title: PsDefensin2 pathwayRNAi and Ml

description: Relative expression level to L32 (fig. 4d).
DOI: 10.5061/dryad.t50q216/25
title: PsHemiptericin pathwayRNAi and Ec

description: Relative expression level to L32 (fig. 4e).
DOI: 10.5061/dryad.t50q216/26
title: PsHemiptericin pathwayRNAi and Ml

description: Relative expression level to L32 (fig. 4f).
DOI: 10.5061/dryad.t50q216/27
title: PsLysozyme b1 pathwayRNAi and Ec

description: Relative expression level to L32 (fig. 4g).
DOI: 10.5061/dryad.vd80g8n/1
title: The data used in the paper
DOI: 10.17632/wkhtxtzddb.1
title: Data for: The effect of overburden thickness on deformation mechanism in Keping fold-thrust belt, southwestern Chinese Tian Shan: Insights from analogue modeling

description: Figures and tables.
DOI: 10.17632/y9y8vbsytp.1
title: Data for: The interplay between exposure and preference for unpalatable foods by lambs

description: Raw data for exposure and preference tests
DOI: 10.5061/dryad.1dh25n9/1
title: Snow Model and Cover Data

description: Snow model described and used in the publication, together with cover data by tree species. See the read-me for details.
DOI: 10.5061/dryad.37nh37f/1
title: Summarised data on 16S exact genetic variants of rhizobia associated with Acacia acuminata in Western Australia

description: This CSV file contains data on the presence or absence, and read counts for 16S exact genetic variants found associated with individual Acacia trees within 24 sites. Also included is metadata for the sites, including all predictors used in the associated paper. Please see associated paper for full details on sample collection and processing.
DOI: 10.5061/dryad.37nh37f/2
title: Raw 16S Illumina reads (miseq) of rhizobia collected from soil surrounding Acacia acuminata trees.

description: These sequences come from pooled cultured isolates. Isolates were derived from individual nodules from Acacia acuminata seedling used to trap rhizobia strains from soil that was collected around individual Acacia acuminata trees in the field. This file contains miseq runs for 72 samples, where each sample is the pooled isolates collected from soil surrounding a single Acacia tree. Please see associated paper for full details on sample collection and preparation. The zip file contains two fastq.gz files for each sample, for the forward (R1) and reverse (R2) reads.
DOI: 10.5061/dryad.3vc108b/1
title: Black bear home range dataset

description: Home range data from black bears in MI, MO, and MS (USA) from 2008-2017. Data includes bear ID, range area, state, season, year, and other environmental variables. For details about the variables please refer to the manuscript. If more info needed contact M. Gantchoff.
DOI: 10.5061/dryad.46f1n9j/2
title: Locations of individual plants collected in July 2016 at Long-Term Mycorrhiza Research Site

description: The locations of individual plants were recorded on the coordinate plane of the grid (45 m X 50 m ) where permanent plots were placed for plant community survey at the Long-Term Mycorrhiza Research Site in the University of Guelph Nature Reserve, Guelph, Canada . The origin (0, 0) is located on a north corner of the grid, and X and Y axes are oriented toward southwest and southeast from the origin, respectively.
DOI: 10.5061/dryad.4fg24s2/1
title: Dead adult counts

description: Counts of dead adults for each population cage ("Box")
DOI: 10.5061/dryad.4fg24s2/2
title: Larval counts

description: Counts of 3rd, 4th and 5th instar larvae for each population cage
DOI: 10.5061/dryad.4fg24s2/3
title: Analysis and R code

description: Analysis details and R code for the analyses and data visualisations
DOI: 10.5061/dryad.57v9d68/10
title: Sick-Fish-Full-Transects

description: 10 x 5 m transects counting all fish on Galapagos reefs with the specific goal of detecting fish disease
DOI: 10.5061/dryad.57v9d68/11
title: focus_species_transects

description: Transects looking for four focal target species showing the highest prevalence of disease
DOI: 10.5061/dryad.57v9d68/12
title: roving_transects

description: Searches over wider areas of Galapagos reefs to detect all species showing disease signs
DOI: 10.5061/dryad.57v9d68/13
title: community_prevalence

description: File with total number of infected species by site
DOI: 10.5061/dryad.57v9d68/14
title: Hermanos_nov_2016_focus_species_transects

description: Target species transects from 4 Hermanos East site of high prevalence in November 2016
DOI: 10.5061/dryad.57v9d68/15
title: Hermanos_july_2017_focus_species_transects

description: Target species transects from Cuatro Hermanos East July 2017
DOI: 10.5061/dryad.57v9d68/8
title: fishID

description: Traits database for fish species in the Galapagos Islands
DOI: 10.5061/dryad.57v9d68/9
title: community_transects

description: 10x5 m transects counting fish abundance for all species encountered during the study
DOI: 10.5061/dryad.5p464rm/1
title: antenna_function_20180604
DOI: 10.5061/dryad.5p464rm/2
title: efish_2015_2016_2017_Elder_Fox
DOI: 10.5061/dryad.5p464rm/3
title: Elder_daily_20180930
DOI: 10.5061/dryad.5p464rm/4
title: Elder_temperature_usgs_06012014-09302017
DOI: 10.5061/dryad.6p5kd34/1
title: DFwt18-3294.Rdata SNP data file in adegenet compressed format.

description: DFwt18-3294.Rdata is a genlight object (adegenet] that contains the SNP data and associated metadata. It can be accessed and interrogated by loading it in R.
DOI: 10.5061/dryad.6p5kd34/2
title: DFwt18-3294_read.r

description: A script to read in the data to a binary genlight object (Jombart 2008, Jombart & Ahmed 2011) to facilitate analysis. Draws on R package dartR (Gruber et al. 2018). Shows the code to create DFwt18-23294.Rdata.
DOI: 10.5061/dryad.6p5kd34/3
title: DFwt18-3294_analysis

description: A script to replicate the analysis. Also draws on R package dartR (Gruber et al. 2018)
DOI: 10.5061/dryad.6p5kd34/4
title: Table_S1

description: Details of individuals assigned to likelihood classes (parental Emydura macquarii and Myuchelys georgesi); F1 hybrids (F1); backcrosses of F1 hybrids to one or the other parentals, F1xEM or F1xMY) by New Hybrids (Anderson & Thompson 2002).
DOI: 10.5061/dryad.8206227/38
title: S13B-Passeri-Overlap

description: S13B Fig. Input visualization for the 2015.Passeri/2014.Passeriformes_Clade2 alignment, with coverage locally relaxed. File format: .pdf.
DOI: 10.5061/dryad.8206227/39
title: S13C-Passeri-Overlap-0-mnpw

description: S13C Fig. Alignment visualization for the 2015.Passeri/2014.Passeriformes_Clade2 alignment, with coverage locally relaxed. File format: .pdf.
DOI: 10.5061/dryad.8206227/40
title: S13D-Passeri-Overlap-mir

description: S13D File. Set of Maximally Informative Relations (MIR) inferred for the 2015.Passeri/2014.Passeriformes_Clade2 alignment, with coverage locally relaxed. Total = 140 MIR. File format: .csv.
DOI: 10.5061/dryad.8206227/41
title: S14A-Telluraves-Overlap-Whole-Concept-Resolution

description: S14A Text. Reasoner input constraints for the 2015./2014.Telluraves alignment (higher-level subset), under whole-concept resolution. Includes information on run commands; and 0 instances of "no coverage". File format: .txt.
DOI: 10.5061/dryad.8206227/42
title: S14B-Telluraves-Overlap-Whole-Concept-Resolution

description: S14B Fig. Input visualization for the 2015./2014.Telluraves alignment (higher-level subset), under whole-concept resolution. File format: .pdf.
DOI: 10.5061/dryad.8206227/43
title: S14C-Telluraves-Overlap-Whole-Concept-Resolution-0-mnpw

description: S14C Fig. Alignment visualization for the 2015./2014.Telluraves alignment (higher-level subset), under whole-concept resolution. File format: .pdf.
DOI: 10.5061/dryad.8206227/44
title: S14D-Telluraves-Overlap-Whole-Concept-Resolution-mir

description: S14D File. Set of Maximally Informative Relations (MIR) inferred for the 2015./2014.Telluraves alignment (higher-level subset), under whole-concept resolution. Total = 81 MIR. File format: .csv.
DOI: 10.5061/dryad.8206227/45
title: S15A-Telluraves-Overlap-Split-Concept-Resolution

description: S15A Text. Reasoner input constraints for the 2015./2014.Telluraves alignment (higher-level subset), under split-concept resolution. Includes information on run commands; and 0 instances of "no coverage". File format: .txt.
DOI: 10.5061/dryad.8206227/46
title: S15B-Telluraves-Overlap-Split-Concept-Resolution

description: S15B Fig. Input visualization for the 2015./2014.Telluraves alignment (higher-level subset), under split-concept resolution. File format: .pdf.
DOI: 10.5061/dryad.9r4r7p1/1
title: Raw data for chromosome inversions

description: Individual karyotypes per locality. Each locality is in a different page of the file.
DOI: 10.5061/dryad.9r4r7p1/2
title: Raw-data-ssr

description: Genotypes for 12 microsatellite loci in various locations.
DOI: 10.5061/dryad.b03475b/1
title: Population information and Alleles  - Limnoperna fortunei

description: This dataset describes the genotypes detected for 5 nuclear microsatellite markers in 3 Limnoperna fortunei populations in the Paranapanema River. Locations of populations and number of individuals collected  is also  described.
DOI: 10.5061/dryad.b2r160s/1
title: README

description: This document defines all abbreviations within the other data files.
DOI: 10.5061/dryad.b2r160s/2
title: Raw_qPCR_Data

description: Raw qPCR data from a QuantStudio 12K Flex for all samples and candidate genes.
DOI: 10.5061/dryad.b2r160s/3
title: PCR_Efficiencies

description: This file contains the PCR efficiencies of all candidate genes used in the study. The efficiencies were calculated using LinRegPCR.
DOI: 10.5061/dryad.b2r160s/4
title: Processed_qPCR_Data

description: This file contains the information needed to normalize the Cq values from the raw data, as well as the final DCt values that were used in the manuscript.
DOI: 10.5061/dryad.b2r160s/5
title: Sample_Annotation

description: This file contains information for each sample in the study, including the individual sample's rearing tank, sire, population, weight, treatment group, etc.
DOI: 10.5061/dryad.b2r160s/6
title: R_Source_Code

description: This text file contains the R source code used for the analyses in the paper.
DOI: 10.5061/dryad.cn63cj7/1
title: Rudman_SticklebackICPData_171122

description: ICP data used to construct figures 1A, 2A, and S1.
DOI: 10.5061/dryad.cn63cj7/2
title: Rudman_SticklebackExcretionData_171124

description: Data on nutrient excretion by stickleback plate phenotype.
DOI: 10.5061/dryad.d36f5/2
title: SDM_data.tar

description: Species distribution modeling data including occurrence points, R output, and historical climate layers.
DOI: 10.5061/dryad.d36f5/3
title: Entomyzon_cyanotis_ddRAD

description: Sorted bam files of ddRAD reads mapped onto a reference.
DOI: 10.5061/dryad.d36f5/4
title: Gerygone_magnirostris_ddRAD

description: Sorted bam files of ddRAD reads mapped onto a reference.
DOI: 10.5061/dryad.d36f5/5
title: Lichmera_indistincta_ddRAD

description: Sorted bam files of ddRAD reads mapped onto a reference.
DOI: 10.5061/dryad.d36f5/6
title: Melithreptus_albogularis_ddRAD

description: Sorted bam files of ddRAD reads mapped onto a reference.
DOI: 10.5061/dryad.d36f5/7
title: Myzomela_obscura_ddRAD

description: Sorted bam files of ddRAD reads mapped onto a reference.
DOI: 10.5061/dryad.d36f5/8
title: Philemon_buceroides_ddRAD

description: Sorted bam files of ddRAD reads mapped onto a reference.
DOI: 10.5061/dryad.f7k2333/4
title: dicynodont_sizes

description: A .csv file containing all anomodont taxa used in our analyses
involving basal skull length, with corresponding basal skull lengths (“bsl”) for each taxon. This
.csv file, with filename, is used in the R code.
DOI: 10.5061/dryad.f7k2333/5
title: dicynodont_sacrum_states

description: A .csv file containing all anomodont taxa used in our
analyses involving sacral counts, with corresponding sacrum count state for each taxon. Coding
of states described in the main text. This .csv file, with filename, is used in the R code.
DOI: 10.5061/dryad.fn38f87/1
title: Phenotypic data from common-garden experiment
DOI: 10.5061/dryad.fn38f87/2
title: Neutral SNP from 13 populations of Rana arvalis
DOI: 10.5061/dryad.h8401kn/1
title: Raw data

description: All field, laboratory, and semi-natural field data used for this study.
DOI: 10.5061/dryad.jc14081.1/1.1
title: Object Category Tuning Curves and Gradients

description: This file contains tuning curves made from responses (to regular images) to the 20 object categories used. Four types of gradient values are also included defined according to images used (1=merged, 2=array) and classifier (binary or 1000-way)
DOI: 10.5061/dryad.jc14081.1/6.1
title: Orientation Tuning Curves and Gradients

description: Tuning curve values and binary detection gradient values for oriented grating stimuli
DOI: 10.5061/dryad.jc14081.1/7.1
title: Performance on Orientation Detection Tasks

description: Files containing true positive and true negative performance values for attention applied in different ways
DOI: 10.5061/dryad.jc14081.1/8.1
title: Orientation Task Images

description: This file contains images with two orientated stimuli in them along with information on the stimuli locations, orientations, and color
DOI: 10.5061/dryad.jc14081.1/9.1
title: Images for Object task

description: Merged and Array object category images
DOI: 10.5061/dryad.m930f2m/2
title: Tao_ozarkar_Beck_Bhandawat_dataset

description: There are 34 Excel files containing the 2D-coordinates of the fly. The actual arena was 3.2 cm in radius. These data have been normalized such that the data fits in a unit circle with its center at the origin. Therefore, 3.2 cm = 1. The odor-zone was 1.2 cm in diameter. In this dataset, odor-zone is a circle centered at (0,0) with a radius 1.2/3.2 = 0.375.
DOI: 10.5061/dryad.nf6b29v/1
title: Peninsular Malaysia Natural Forest and Natural Forest Loss

description: Natural forest (year 1988) and natural forest loss (total for years 1988-2000) data for Peninsular Malaysia at 30 m x 30 m resolution from the research article ‘Expansion of Industrial Plantations Continues to Threaten Malayan Tiger Habitat’, which includes a full description of the data creation process.
DOI: 10.5061/dryad.pb5316b/1
title: data-dryad

description: AxSpA patients data for analyses and data tables
DOI: 10.5061/dryad.r2s74q4/1
title: ELE_Foraging_efficiency

description: Rawdata handling time and sugar extraction rate
DOI: 10.5061/dryad.r2s74q4/2
title: ELE_Interaction_probability

description: Rawdata interaction probability
DOI: 10.5061/dryad.rd46vq3/1
title: PalmFrugDatasetOCT2018

description: Dataset containing species interaction records of palm-frugivore seed dispersal observations from the Neotropics and Afrotropics
DOI: 10.5061/dryad.rr137kn/7
title: selection coefficients and starting allele frequencies
DOI: 10.5061/dryad.rr137kn/9
title: number of selected allele

description: This file has 10 columns which correspond to the number of allele that have &gt;=0.1 frequency change (method 1) in 10 replicates respectively. For a description of method 1, see Materials and Methods: Different approaches to determine the presence of selected alleles and their frequencies.
DOI: 10.5061/dryad.t50q216/28
title: PsLysozyme b1 pathwayRNAi and Ml

description: Relative expression level to L32 (fig. 4h).
DOI: 10.5061/dryad.t50q216/29
title: PsLysozyme c1 pathwayRNAi and Ec

description: Relative expression level to L32 (fig. 4i).
DOI: 10.5061/dryad.t50q216/30
title: PsLysozyme c1 pathwayRNAi and Ml

description: Relative expression level to L32 (fig. 4j).
DOI: 10.5061/dryad.t50q216/31
title: PsDefensin1 PGRPRNAi and Ec

description: Relative expression level to L32 (fig. 5a).
DOI: 10.5061/dryad.t50q216/32
title: PsDefensin1 PGRPRNAi and Ml

description: Relative expression level to L32 (fig. 5b).
DOI: 10.5061/dryad.t50q216/33
title: PsDefensin2 PGRPRNAi and Ec

description: Relative expression level to L32 (fig. 5c).
DOI: 10.5061/dryad.t50q216/34
title: PsDefensin2 PGRPRNAi and Ml

description: Relative expression level to L32 (fig. 5d).
DOI: 10.5061/dryad.t50q216/35
title: PsHemiptericin PGRPRNAi and Ec

description: Relative expression level to L32 (fig. 5e).
DOI: 10.5061/dryad.t50q216/36
title: PsHemiptericin PGRPRNAi and Ml

description: Relative expression level to L32 (fig. 5f).
DOI: 10.17632/wxpjtvv6kt.1
title: Data for: Significantly enhanced thermal conductivity in polyvinyl alcohol composites enabled by dopamine modified graphene nanoplatelets
DOI: 10.17632/xc3vd7dtm2.1
title: Data for: Facile Synthesis of Flowered Mesoporous Graphene Oxide-Lanthanum Fluoride Nanocomposite for Adsorptive Removal of Arsenic

description: Supplementary materials
DOI: 10.5061/dryad.386q152/1
title: Appendices 1-4
DOI: 10.5061/dryad.39gq16q/1
title: Dolezal_Func.Ecology_Data

description: The file provides data on Myricaria elegans radial stem growth, stem sapwood, branch and leaf non-structural carbohydrates and leaf nutrient concentrations from different elevations in Ladakh, NW Himalayas, India.
DOI: 10.5061/dryad.4d79f7h/1
title: Raw Data of 13 microsatellites of 17 Coregonus populations in Genetix format

description: Raw data of 13 microsatellite loci; 343 individuals; 15 contemporary Coregonus populations; additional 18 individuals from 2 historical populations (museum material); lake-resident and anadromous whitefish populations of southern Baltic and North Sea basins; provided in Genetiix format; population names and geographic origin as in Table 1 of Mehner et al. BMC Evol Biol
DOI: 10.5061/dryad.4j1h61t/1
title: Weight gain of Timema stick insects fed with different host plants

description: Feeding experiment used to estimate the breadth of the fundamental feeding niche of multiple Timema stick insect species: Weight gain data of individuals from eight Timema species (from four sexual-asexual sister species pairs) fed with seven different feeding treatments (= seven different host plants). Between 10 and 20 individual per species per feeding treatment.
DOI: 10.5061/dryad.57v9d68/16
title: geographic_prevalence

description: File containing disease prevalence data for each site
DOI: 10.5061/dryad.57v9d68/17
title: species_prevalence

description: File describing prevalence for each site and species
DOI: 10.5061/dryad.57v9d68/18
title: sst.anomaly

description: SST anomaly for each site
DOI: 10.5061/dryad.57v9d68/19
title: chl.a.anomaly

description: Chlorophyll a anomaly for each site
DOI: 10.5061/dryad.57v9d68/20
title: summary_satellite_temps

description: Satellite temperatures for all study sites
DOI: 10.5061/dryad.57v9d68/21
title: passer_beebei_fishcams

description: Censuses from stationary video deployments at Cuatro Hermanos East of Stegastes beebei and Holacanthus passer using "MaxN": max number of individuals in a single frame
DOI: 10.5061/dryad.57v9d68/22
title: Scientific_reports_submission

description: All R code for analysis and figure creation. Note: for use all data files must be in same folder as working directory.