cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.6hpe5u
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acalypha subintegra Airy Shaw"
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008939-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bhxr5p
title: Occurrence Download

description: A dataset containing 13094 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Mammalia Collection of Institute of Systematics and Evolution of Animals"
 ]
}

 The dataset includes 13094 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034409-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qmtog2
title: Occurrence Download

description: A dataset containing 6051 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Animalia",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Year is 2014"
 ]
}

 The dataset includes 6051 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002944-150512124619364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.plrrzc
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cuora trifasciata (Bell, 1825)"
 ]
}

 The dataset includes 97 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053536-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aet2ff
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acalypha senilis Baill."
 ]
}

 The dataset includes 35 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008890-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1pcwhr
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Muscari macrocarpum Sweet"
 ]
}

 The dataset includes 41 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002944-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3kemal
title: Occurrence Download

description: A dataset containing 2036 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Togo",
 "Year 1980-1985"
 ]
}

 The dataset includes 2036 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034410-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h47zzs
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acalypha stellata Cardiel"
 ]
}

 The dataset includes 17 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008927-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25604019
title: Main investment industries of Chinese multinational companies in Aktobe Region, Mangystau Region, Kyzylorda Region, 2024.

description: Main investment industries of Chinese multinational companies in Aktobe Region, Mangystau Region, Kyzylorda Region, 2024.
DOI: 10.6084/m9.figshare.25604019.v1
title: Main investment industries of Chinese multinational companies in Aktobe Region, Mangystau Region, Kyzylorda Region, 2024.

description: Main investment industries of Chinese multinational companies in Aktobe Region, Mangystau Region, Kyzylorda Region, 2024.
DOI: 10.15468/dl.3gxw65
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erysimum humile Pers.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 36 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002945-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7czz6u
title: Occurrence Download

description: A dataset containing 221252 species occurrences available in GBIF matching the query:
{
 "GenusKey" : [
 "is Diospyros L."
 ]
}

 The dataset includes 221252 records from 1145 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019760-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kwt91p
title: Occurrence Download

description: A dataset containing 177 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caluromys philander (Linnaeus, 1758)",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 177 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007293-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xrqaix
title: Occurrence Download

description: A dataset containing 672 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Liste taxonomique des serpents et autres reptiles du Togo"
 ]
}

 The dataset includes 672 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034413-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q7em4s
title: Occurrence Download

description: A dataset listing the 186 species recorded in GBIF matching the query:
{
 "and" : [
 "GadmGid is BRA.5.141_2",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 186 records were derived from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008953-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ebcypx
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aporrhiza multijuga Gilg"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045645-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.29r5uk
title: Occurrence Download

description: A dataset listing the 62280 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "BasisOfRecord is one of (Human Observation)"
 ]
}

 The dataset's 62280 records were derived from 472 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045636-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u3c6bu
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aporrhiza tessmannii Gilg ex Radlk."
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045646-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18150/sjtlhj
title: Semilocal Meta-GGA Exchange-Correlation Approximation From Adiabatic Connection Formalism: Extent and Limitations

description: Data for the article https://doi.org/10.1021/acs.jpca.3c03976Semilocal Meta-GGA Exchange–Correlation Approximation from Adiabatic Connection Formalism: Extent and Limitations, Subrata Jana, Szymon Śmiga, Lucian A. Constantin, Prasanjit Samal, J. Phys. Chem. A 2023, 127, 41, 8685–8697
DOI: 10.15468/dl.8yvqhe
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Deinbollia angustifolia D.W.Thomas"
 ]
}

 The dataset includes 22 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045647-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6rsvwc
title: Occurrence Download

description: A dataset containing 2054 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Podarcis melisellensis (Braun, 1877)"
 ]
}

 The dataset includes 2054 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045648-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xry9qy
title: Occurrence Download

description: A dataset containing 4625 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhynchophorus ferrugineus (A.G.Olivier, 1791)"
 ]
}

 The dataset includes 4625 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045649-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9566712
title: Forex Exchange Rates Since 2004 (Updated Daily)
DOI: 10.15468/dl.sy95w9
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Deinbollia dasybotrys Gilg ex Radlk."
 ]
}

 The dataset includes 16 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045650-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27111499
title: <b>Awareness of deleterious oral habits and knowledge of habit breaking appliance among parents in Alkharj - A cross sectional study</b>

description: Knowledge and awareness are essential prerequisites for changes in behavior related to health and disease anticipation.The present manuscript is unique, offering a awareness of deleterious oral habits and knowledge of habit breaking appliances among parents in Alkharj, Saudi Arabia.
DOI: 10.6084/m9.figshare.27111499.v2
title: <b>Awareness of deleterious oral habits and knowledge of habit breaking appliance among parents in Alkharj - A cross sectional study</b>

description: Knowledge and awareness are essential prerequisites for changes in behavior related to health and disease anticipation.The present manuscript is unique, offering a awareness of deleterious oral habits and knowledge of habit breaking appliances among parents in Alkharj, Saudi Arabia.
DOI: 10.15468/dl.smam47
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Deinbollia insignis Hook.fil."
 ]
}

 The dataset includes 29 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045652-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27179109.v1
title: Supplementary Material for: Effect of frail phenotype on cardiorenal risk and healthcare utilization in older patients with chronic kidney disease

description: Introduction
Limited data have addressed frailty’s role in cardiorenal risk among older adult patients with chronic kidney disease (CKD). We investigated whether frailty could predict major renal and cardiovascular events, healthcare utilization, and mortality in these patients.
Methods
We conducted a prospective cohort enrolling patients ≥ 75 years with a stable estimated glomerular filtration rate (eGFR) &lt; 60 mL/min/1.73 m2. Frailty phenotype consists of shrinking, low activity, exhaustion, weakness, and slowness, scored 0 to 5. The primary composite renal outcome was a ≥ 25 % decrease in eGFR concurrent with CKD stage progression or dialysis initiation. Secondary outcomes included major adverse cardiovascular events (MACE), emergency room (ER) visits, all-cause mortality, and hospitalization. Using multivariate Cox models with/without competing risk analyses, we explored frailty’s impact on these outcomes.
Results
Among 203 older CKD patients (mean age 81.6 ± 5.0 years, female 40.9 %, diabetes 33.0 %, body mass index 24.9 ± 3.7 kg/m2), 67.9% were frail. Over 3.47 years, 38.9% faced composite renal outcomes, 13.3% MACE, 15.3% mortality, and more than half utilized healthcare. Every one-point frailty elevated composite renal outcome risk by 28.0 % (HR: 1.28, 95% CI:1.03–1.59) and significantly increased secondary outcomes (hospitalization [HR: 1.24, 95% CI: 1.06–1.46], unexpected ER visit [HR: 1.20, [95% CI:1.03–1.39], and mortality [HR: 1.51, 95% CI: 1.06–2.16]) but not for MACE [HR: 1.43, 95% CI: 0.99–2.08]. Results were consistent across subgroups and competing risk analysis.
Conclusion
In CKD patients ≥ 75 years, frailty was associated with progressive kidney disease, increased mortality and healthcare utilization.
DOI: 10.15468/dl.3ra45x
title: Occurrence Download

description: A dataset containing 12773 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paeonia officinalis L."
 ]
}

 The dataset includes 12773 records from 342 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045651-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hxtsmf
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Deinbollia macrantha Radlk."
 ]
}

 The dataset includes 5 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000000-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.59wk4v
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Deinbollia macroura Gilg ex Radlk."
 ]
}

 The dataset includes 12 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000001-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11518140
title: Expansion and fluctuations-enhanced microscopy for nanoscale molecular profiling of cells and tissues - Data processing manual

description: Here we provide test datasets and a training manual for the parameter optimization with eSRRF. 

The training manual will guide users through an eSRRF paramenter optimization routine and quantiative image quality assesment with both, the ImagJ-Plugin NanoJ-eSRRF (Chapter 1) and the python implementation NanoPyx-eSRRF (Chapter 2). By showcasing the optimization routine on three differnt test dataset (Chapter 3), providing intermediate results and expected outcome, the users can eaisily learn how to find the optimal processing parameters for eSRRF processing.

Three samples are provided to showcase the eSRRF reconstruction process:

1. Microtubules sample: Set01_DNA-PAINT_Microtubules.tif

DNA-PAINT microscopy measurement of immunolabeled microtubules in fixed COS-7 cells, showing 0.121 localizations per frame and µm^2 (data published in Laine and Heil et al.)

108x90 pixels, 500 frames, pixel size: 160 nm 

2. Kidney sample: Set02_KidneySDNephrinExM.tif

ExM of human kidney biopsies stained with nephrin (data published in Kylies et al.)

150x150 pixels, 200 frames, pixel size: 102 nm 

3. Single emitters simulation: Set03_simulation_groundTruth_2p5Sigma - Fluorescence stack_Avg5.tif

Simulated individual molecules emitting placed on concentric rings with radii increasing by 220 nm steps. On each ring the molecules are separated by 57.5, 115, 173, 230, 288 and 345 nm, respectively (data published in Laine and Heil et al.)

33x33 pixels, 100 frames, pixel size: 100 nm 

4. Test dataset for drift/vibration correction: Set04_ExSRRF_eSRRF_vibration_correction_practice_dataset.tif

EsM of human kidney biopsies stained with nephrin (data published in Kylies et al.)

100x100 pixels, 200 frames, pixel size: 102 nm

5. Test dataset for photobleaching: Set05_Photobleaching.tif

ExM of 120 nm Nanorulers (data published in Kylies et al.)

150x150 pixels, 75 frames, pixel size: 64 nm

 

Jupyter-Notebook: ridge_detection.ipynb

With this notebook qantitative image analyis of sturctures resolved with ExSRRF can be performed.

Such as:



calculation of the target structure density. 

identifying areas with high inter-ridge spacing by maping the distance to the nearest ridge based on Euclidean distance transform. 

measuring the spatial uniformity of the structure of interest by examining the distribution of the local densities and the distances to the nearest ridge.
DOI: 10.5281/zenodo.11518141
title: Expansion and fluctuations-enhanced microscopy for nanoscale molecular profiling of cells and tissues - Data processing manual

description: Here we provide test datasets and a training manual for the parameter optimization with eSRRF. 

The training manual will guide users through an eSRRF paramenter optimization routine and quantiative image quality assesment with both, the ImagJ-Plugin NanoJ-eSRRF (Chapter 1) and the python implementation NanoPyx-eSRRF (Chapter 2). By showcasing the optimization routine on three differnt test dataset (Chapter 3), providing intermediate results and expected outcome, the users can eaisily learn how to find the optimal processing parameters for eSRRF processing.

Three samples are provided to showcase the eSRRF reconstruction process:

1. Microtubules sample: Set01_DNA-PAINT_Microtubules.tif

DNA-PAINT microscopy measurement of immunolabeled microtubules in fixed COS-7 cells, showing 0.121 localizations per frame and µm^2 (data published in Laine and Heil et al.)

108x90 pixels, 500 frames, pixel size: 160 nm 

2. Kidney sample: Set02_KidneySDNephrinExM.tif

Human kidney biopsies stained with nephrin (data published in Kylies et al.)

150x150 pixels, 200 frames, pixel size: 102 nm 

3. Single emitters simulation: Set03_simulation_groundTruth_2p5Sigma - Fluorescence stack_Avg5.tif

Simulated individual molecules emitting placed on concentric rings with radii increasing by 220 nm steps. On each ring the molecules are separated by 57.5, 115, 173, 230, 288 and 345 nm, respectively (data published in Laine and Heil et al.)

33x33 pixels, 100 frames, pixel size: 100 nm 

 

Jupyter-Notebook: ridge_detection.ipynb

With this notebook qantitative image analyis of sturctures resolved with ExSRRF can be performed.

Such as: 



calculation of the target structure density. 

identifying areas with high inter-ridge spacing by maping the distance to the nearest ridge based on Euclidean distance transform. 

measuring the spatial uniformity of the structure of interest by examining the distribution of the local densities and the distances to the nearest ridge.
DOI: 10.5281/zenodo.13895496
title: Expansion and fluctuations-enhanced microscopy for nanoscale molecular profiling of cells and tissues - Data processing manual

description: Here we provide test datasets and a training manual for the parameter optimization with eSRRF. 

The training manual will guide users through an eSRRF paramenter optimization routine and quantiative image quality assesment with both, the ImagJ-Plugin NanoJ-eSRRF (Chapter 1) and the python implementation NanoPyx-eSRRF (Chapter 2). By showcasing the optimization routine on three differnt test dataset (Chapter 3), providing intermediate results and expected outcome, the users can eaisily learn how to find the optimal processing parameters for eSRRF processing.

Three samples are provided to showcase the eSRRF reconstruction process:

1. Microtubules sample: Set01_DNA-PAINT_Microtubules.tif

DNA-PAINT microscopy measurement of immunolabeled microtubules in fixed COS-7 cells, showing 0.121 localizations per frame and µm^2 (data published in Laine and Heil et al.)

108x90 pixels, 500 frames, pixel size: 160 nm 

2. Kidney sample: Set02_KidneySDNephrinExM.tif

Human kidney biopsies stained with nephrin (data published in Kylies et al.)

150x150 pixels, 200 frames, pixel size: 102 nm 

3. Single emitters simulation: Set03_simulation_groundTruth_2p5Sigma - Fluorescence stack_Avg5.tif

Simulated individual molecules emitting placed on concentric rings with radii increasing by 220 nm steps. On each ring the molecules are separated by 57.5, 115, 173, 230, 288 and 345 nm, respectively (data published in Laine and Heil et al.)

33x33 pixels, 100 frames, pixel size: 100 nm 

4. Test dataset for drift/vibration correction: Set04_ExSRRF_eSRRF_vibration_correction_practice_dataset.tif

Human kidney biopsies stained with nephrin (data published in Kylies et al.)

100x100 pixels, 200 frames, pixel size: 102 nm

 

Jupyter-Notebook: ridge_detection.ipynb

With this notebook qantitative image analyis of sturctures resolved with ExSRRF can be performed.

Such as:



calculation of the target structure density. 

identifying areas with high inter-ridge spacing by maping the distance to the nearest ridge based on Euclidean distance transform. 

measuring the spatial uniformity of the structure of interest by examining the distribution of the local densities and the distances to the nearest ridge.