cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19762966
title: Supplementary Material for: The correlation between ferroptosis and m6A methylation in patients with acute kidney injury

description: Objective: The present research analyzed the correlation between m6A methylation and ferroptosis associated genes (FAGs) in acute kidney injury (AKI) patients. Methods: Bioinformatics analysis of microarray profiles (GSE30718) were performed to select differential expression genes (DEGs). FAGs are derived from systematic analysis of the aberrances and functional implications. The m6A methylation related genes were derived from the molecular characterization and clinical significance of m6A modulators. The multi-gene correlation of ferroptosis and M6A methylation modification were displayed. Then, the CIBERSORT algorithm was used to analyse the proportions of 22 immune cells infiltration. Results: In total, 349 DEGs were extracted between the AKI and control samples, among which 172 genes were up-regulated and 177 were down-regulated. FAGs (SLC1A5, CARS, SAT1, ACSL4, NFE2L2, TFRC and MT1G) and m6A methylation related genes (YTHDF3, WTAP and IGF2BP3) were significantly increased in AKI patients (P&lt; 0.05). FAGs (SAT1, ACSL4 and NFE2L2) was positively correlated with the expression level of m6A methylation genes (P&lt; 0.05). NFE2L2 has high diagnostic value, and level of NFE2L2 was negatively correlated with the degree of follicular helper T (TFH) cells infiltration. Conclusion: Our research could provide a new theoretical basis for the pathogenesis and immune mechanism of AKI.
DOI: 10.34740/kaggle/dsv/3917429
title: Russian Invasion of Ukraine
DOI: 10.6084/m9.figshare.19522255.v21
title: Data scientist search behaviour

description: The repo contains artifacts of survey study and interviews with data scientists on understanding their search behaviour in online resources.
DOI: 10.34740/kaggle/dsv/3917446
title: Data Smart book datasets
DOI: 10.6084/m9.figshare.19947449
title: Supplementary Material for: Circular RNA hsa_circ_0068252 functions in cisplatin resistance and immune response via miR-1304-5p/PD-L1 axis in non-small cell lung cancer

description: Background: Research suggests that circRNAs play important roles in non-small cell lung cancer (NSCLC). The function of hsa_circ_0068252 in NSCLC, especially in cisplatin (DDP) resistance and the mechanisms, was explored in this study. Methods: NSCLC patient samples and two NSCLC cell lines along with corresponding DDP-resistant cell lines were used. Expression levels of circ_0068252 was detected. SiRNA for circ_0068252 and inhibitor for miRNA were used in all functional analysis. A co-culture system of NSCLC cells with CD8+ T cells was used. The cellular location of circ_0068252 was detected and its target miRNA was predicted and verified. Finally, the mechanism responsible for circ_0068252 function on PD-L1 was analyzed using luciferase reporter assay in the two DDP-resistant cell lines, as well as in the co-culture system. The cytotoxicity of T cells was detected by lactate dehydrogenase (LDH) assay. Results: Our findings revealed that high level of circ_0068252 was correlated with poor prognosis of NSCLC and DDP resistance. Knockdown of circ_0068252 could promote the sensitivity of DDP-resistant NSCLC cells to DDP. Moreover, knockdown of circ_0068252 could regulate the immune micro-environment which was mediated via CD8+ T cells. Finally, circ_0068252 could up-regulate PD-L1 expression by adsorbing miR-1304-5p. Conclusion: The circ_0068252/miR-1304-5p/PD-L1 signal axis participates in the regulation of DDP resistance and immune escape of NSCLC cells. Our results suggest that circ_0068252 may be a potential diagnostic marker and therapeutic target for DDP-resistant NSCLC.
DOI: 10.6084/m9.figshare.20264529
title: Cormorant abundance, diets, and foraging activities in Arizona

description: Data contained here collected in natural and artificial waters across Arizona, USA, 2017-2019. The study focused on two species of cormorants, double-crested and neotropic cormorants, their foraging habits, seasonal numbers, and diet on fish. We highlight cormorant feeding habits across artificial waters in the community fishing program that are stocked with sportfish, and we examined environmental factors that may influence where cormorants congregate and feed at community waters. Data files included are estimated fish losses at community fishing waters (CFPs), habitat covariate data for CFP waters, cormorant feeding observations, and R code (and habitat data in CSV format) used to run the regression analysis.
DOI: 10.6084/m9.figshare.20264529.v1
title: Cormorant abundance, diets, and foraging activities in Arizona

description: Data contained here collected in natural and artificial waters across Arizona, USA, 2017-2019. The study focused on two species of cormorants, double-crested and neotropic cormorants, their foraging habits, seasonal numbers, and diet on fish. We highlight cormorant feeding habits across artificial waters in the community fishing program that are stocked with sportfish, and we examined environmental factors that may influence where cormorants congregate and feed at community waters. Data files included are estimated fish losses at community fishing waters (CFPs), habitat covariate data for CFP waters, cormorant feeding observations, and R code (and habitat data in CSV format) used to run the regression analysis.
DOI: 10.5281/zenodo.6806149
title: Drivers of phytoplankton variability in and Near the Pearl River Estuarine, South China Sea during Typhoon Hato (2017): A numerical study

description: Simulated and Observed data for JGR manuscript: Drivers of phytoplankton variability in and Near the Pearl River Estuarine, South China Sea during Typhoon Hato (2017): A numerical study. Please read the "A Data Interpretation - README.pdf" before loading the dataset.
DOI: 10.5281/zenodo.6809531
title: NOMAD element annotation bowtie2 indices

description: Default list of bowtie2 annotations used in NOMAD manuscript
DOI: 10.5281/zenodo.6809530
title: NOMAD element annotation bowtie2 indices

description: Default list of bowtie2 annotations used in NOMAD manuscript
DOI: 10.5281/zenodo.6809507
title: Promotion of Circum-Pacific Earthquakes on Plate Movement-data

description: data S1. The steady-state deformation data supporting Figure 1(a). The first and second columns show the location of point (longitude and latitude). The third, fourth, and fifth columns show the displacement induced by 2011 Tohoku-Oki Mw 9.0 earthquake (east-west, north-south, and up-down components in m). The sixth, seventh, and eighth columns show the displacement induced by 2010 Chile Mw 8.8 earthquake (east-west, north-south, and up-down components in m). data S2. Expansion of normal direction in the East Pacific Rise supporting Figure 1(b). The first and second columns show the location of point (longitude and latitude). The third and fourth columns show the displacement induced by 2011 Tohoku-Oki Mw 9.0 earthquake (the angle from east and the magnitude of displacement vector in m). The fifth and sixth columns show the displacement induced by 2010 Chile Mw 8.8 earthquake (the angle from east and the magnitude of displacement vector in m). data S3. Steady-state strain field supporting Figure 1(c). The first and second columns show the location of point (longitude and latitude). The third, fourth and fifth columns show the strain changes induced by two earthquakes (east-west, north-south, and shear components). data S4. The co-seismic and post-seismic displacement data supporting Figure 2. The first and second columns show the location of point (longitude and latitude), and the third column show the epicenter distance. The co-seismic and post-seismic displacement induced by 2011 Tohoku-Oki Mw 9.0 earthquake in the fourth column to the ninth column at different times (0, 10yr, 100yr, 1000yr,10000yr, and infinity in m).
DOI: 10.5281/zenodo.6809506
title: Promotion of Circum-Pacific Earthquakes on Plate Movement-data

description: data S1. The steady-state deformation data supporting Figure 1(a). The first and second columns show the location of point (longitude and latitude). The third, fourth, and fifth columns show the displacement induced by 2011 Tohoku-Oki Mw 9.0 earthquake (east-west, north-south, and up-down components in m). The sixth, seventh, and eighth columns show the displacement induced by 2010 Chile Mw 8.8 earthquake (east-west, north-south, and up-down components in m). data S2. Expansion of normal direction in the East Pacific Rise supporting Figure 1(b). The first and second columns show the location of point (longitude and latitude). The third and fourth columns show the displacement induced by 2011 Tohoku-Oki Mw 9.0 earthquake (the angle from east and the magnitude of displacement vector in m). The fifth and sixth columns show the displacement induced by 2010 Chile Mw 8.8 earthquake (the angle from east and the magnitude of displacement vector in m). data S3. Steady-state strain field supporting Figure 1(c). The first and second columns show the location of point (longitude and latitude). The third, fourth and fifth columns show the strain changes induced by two earthquakes (east-west, north-south, and shear components). data S4. The co-seismic and post-seismic displacement data supporting Figure 2. The first and second columns show the location of point (longitude and latitude), and the third column show the epicenter distance. The co-seismic and post-seismic displacement induced by 2011 Tohoku-Oki Mw 9.0 earthquake in the fourth column to the ninth column at different times (0, 10yr, 100yr, 1000yr,10000yr, and infinity in m).
DOI: 10.5445/ir/1000148276
title: An Electronic Nematic Liquid in BaNi2As2

description: Understanding the organizing principles of interacting electrons and the emergence of novel electronic phases is a central endeavor of condensed matter physics. Electronic nematicity, in which the discrete rotational symmetry in the electron fluid is broken while the translational one remains unaffected, is a prominent example of such a phase. It has proven ubiquitous in correlated electron systems, and is of prime importance to understand Fe-based superconductors. Here, we find that fluctuations of such broken symmetry are exceptionally strong over an extended temperature range above phase transitions in BaNi$_2$(As$_{1−x}$P$_x$)$_2$ , the nickel homologue to the Fe-based systems. This lends support to a type of electronic nematicity, dynamical in nature, which exhibits a particularly strong coupling to the underlying crystal lattice. Fluctuations between degenerate nematic configurations cause a splitting of phonon lines, without lifting degeneracies nor breaking symmetries, akin to spin liquids in magnetic systems
DOI: 10.6084/m9.figshare.20265942.v1
title: Supplementary Material for: miR-181a Improved Renal Inflammation by Targeting TNF-α in a Diabetic Nephropathy Animal Model

description: <b><i>Introduction:</i></b> Recent studies have elucidated that miR-181a plays a vital role in various inflammation-associated diseases; however, its role in the pathogenesis of diabetic nephropathy (DN) has not been elucidated clearly. Hence, we investigated the involvement of miR-181a in the pathogenesis of DN in patients and animal models. <b><i>Methods:</i></b> miR-181a levels were measured in the kidneys of DN patients and a DN mouse model (db/db mice) by RT-PCR. The interaction of miR-181a with the 3′-UTR of potential target transcripts was investigated using luciferase reporter assays. miR-181a-GFP-AAV and miR-181a inhibitor were used to overexpress or downregulate miR-181a in the kidney of db/db mice, respectively. The expression of inflammatory proteins and target genes was measured in the kidneys of the animals. <b><i>Results:</i></b> In DN patients and DN mouse models, expression analyses showed a significant decrease in miR-181a levels in the kidney. In addition, a negative linear correlation between miR-181a and proinflammatory gene (IL-1β and TNF-α) levels was observed in the kidneys of DN patients. Overexpression of miR-181a reduced IL-1β and TNF-α expression, whereas suppression of miR-181a worsened these changes, which was attenuated by combined treatment with TNF-α neutralizing antibody in db/db mice. Moreover, luciferase assays revealed that TNF-α is a direct target of miR-181a. <b><i>Conclusion:</i></b> Our data emphasized the anti-inflammatory actions of miR-181a by targeting TNF-α in the context of renal inflammation in DN. Hence, we concluded that miR-181a could be a potential therapeutic option for minimizing renal inflammation in DN.
DOI: 10.6084/m9.figshare.20106188
title: Supplementary Material for: Identification and Verification of Ubiquitin D as a gene associated with HCV-induced HCC

description: Introduction: Accumulated studies have suggested that hepatitis C virus (HCV) infection is one of the leading causes for hepatocellular carcinoma (HCC). However, the mechanisms underlying the effect of HCV on the occurrence of HCC is still poorly understood. Methods: HCV infection datasets (GSE82177 and GSE17856) and HCC datasets (TCGA-LIHC (The Cancer Genome Atlas Liver Hepatocellular Carcinoma) and GSE89377) were downloaded from Gene Expression Omnibus (GEO) or TCGA for analysis. The common differentially expressed genes (DEGs) in the above four datasets were identified by R software. The expression of Ubiquitin D (UBD) in HCV infected HepG2 cells was detected by RT-qPCR and western blot, respectively. The interaction between NS3 and p53 was detected by Co-Immunoprecipitation. The influence of UBD on the proliferation and migration ability of HepG2 cells was evaluated by CCK-8 and wound healing assay, respectively. Results: UBD was upregulated in both HCV infected samples and HCC samples. HCV NS3 interacted with p53 and inhibited its expression. HCV NS3 induced UBD promoted the proliferation and migration of HepG2 cells. Conclusion: Our results suggest that HCV NS3 induced UBD is positively correlated with the development of HCV-related HCC during HCV infection. Targeting UBD could be a potential strategy for preventing and treating HCV-induced HCC.
DOI: 10.25442/hku.20141522.v1
title: Supporting data for "advanced techniques for four-dimensional motion-resolved abdominal diffusion-weighted imaging"

description: This is the phantom dataset for PROPELLER and SCOPER reconstruction. The p.file raw data are acquired using the modified sequence on MRI scanner. PROPELLER.zip file contains multi-channel blades with a rotation angle of 15 degrees. SCOPER.zip file contains not only multi-channel blades with different contrast but also GRE images for reconstructing the final image. <br> <br>
DOI: 10.25442/hku.20141522
title: Supporting data for "advanced techniques for four-dimensional motion-resolved abdominal diffusion-weighted imaging"

description: This is the phantom dataset for PROPELLER and SCOPER reconstruction. The p.file raw data are acquired using the modified sequence on MRI scanner. PROPELLER.zip file contains multi-channel blades with a rotation angle of 15 degrees. SCOPER.zip file contains not only multi-channel blades with different contrast but also GRE images for reconstructing the final image. <br> <br>
DOI: 10.15151/esrf-es-874151388
title: influenza virus polymerase (FluPol)

description: The influenza virus polymerase (FluPol) is implicated in both (i) transcription and (ii) replication of the viral RNA (vRNA). Replication allows to generate new viral genome copies (vRNA) through the synthesis of a complementary RNA (cRNA). The ability of avian influenza virus to efficiently replicate in human cells is mediated by a mechanism of host adaptation, i.e key mutations on the PB2 subunit of FluPol, together with the hijacking of the host factor ANP32, whose sequence differs between avian and human species. Several studies are also suggesting another role for ANP32 which is to act during the cRNA to vRNA replication step by recruiting a second polymerase that would encapsidate the nascent 5’ vRNA extremity. Using cryo-EM, we aim to decipher the mechanistic details of the interaction between FluPol and ANP32 in order to better understand (i) the function of ANP32 during the replication cycle of influenza virus and (ii) host range restriction of influenza virus.
DOI: 10.6084/m9.figshare.19837393
title: TTC22 promotes m6A-mediated WTAP expression and colon cancer metastasis in an RPL4 binding-dependent pattern

description: This is a file containing 13 supplemental figures and figure legends.
DOI: 10.6084/m9.figshare.19837393.v1
title: TTC22 promotes m6A-mediated WTAP expression and colon cancer metastasis in an RPL4 binding-dependent pattern

description: This is a file containing 13 supplemental figures and figure legends.
DOI: 10.6084/m9.figshare.20260911
title: Metabolite BridgeDb ID Mapping Database (20220707)

description: BridgeDb ID mapping database for metabolites, using the latest data release of HMDB 4.0 (Release of 2021-11-02), ChEBI 201 (Release of 01 Juli 2022), and Wikidata (07 Juli 2022) as data sources. <br> Quality control was performed with BridgeDb (3.0.15) against version 20210109 [https://doi.org/10.6084/m9.figshare.13550384], tested in PathVisio 3.3.0. <br> Contains a large update for Chemspider mappings (+18.0%), Guide to Pharmacology (+25.5%), HMDB (+53.5%), ChEBI (+20.0%), Wikidata (+26.7%), LIPID MAPS (+44.2%), InChI-Keys (+147.4%), PubChem-compound (+40.7%), and DrugBank (+28.2%). <br> <br> This work was funded by the NWO Open Science Fund (grant no 203.001.121).
DOI: 10.6084/m9.figshare.20267222
title: Additional file 1 of Comparison of cone bioassay estimates at two laboratories with different Anopheles mosquitoes for quality assurance of pyrethroid insecticide-treated nets

description: Additional file 1. Details for tested insecticide-treated nets.
DOI: 10.6084/m9.figshare.20267222.v1
title: Additional file 1 of Comparison of cone bioassay estimates at two laboratories with different Anopheles mosquitoes for quality assurance of pyrethroid insecticide-treated nets

description: Additional file 1. Details for tested insecticide-treated nets.
DOI: 10.6084/m9.figshare.20267225
title: Additional file 2 of Comparison of cone bioassay estimates at two laboratories with different Anopheles mosquitoes for quality assurance of pyrethroid insecticide-treated nets

description: Additional file 2. Cone bioassays data per subsamples.
DOI: 10.6084/m9.figshare.20267228
title: Additional file 3 of Comparison of cone bioassay estimates at two laboratories with different Anopheles mosquitoes for quality assurance of pyrethroid insecticide-treated nets

description: Additional file 3. Cone bioassays data per net.
DOI: 10.6084/m9.figshare.20267228.v1
title: Additional file 3 of Comparison of cone bioassay estimates at two laboratories with different Anopheles mosquitoes for quality assurance of pyrethroid insecticide-treated nets

description: Additional file 3. Cone bioassays data per net.
DOI: 10.6084/m9.figshare.20267225.v1
title: Additional file 2 of Comparison of cone bioassay estimates at two laboratories with different Anopheles mosquitoes for quality assurance of pyrethroid insecticide-treated nets

description: Additional file 2. Cone bioassays data per subsamples.
DOI: 10.15468/dl.g8469p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Enteromius macrops, Enteromius macrotaenia, Enteromius magdalenae, Enteromius marmoratus, Enteromius martorelli, Enteromius matthesi, Enteromius mattozi, Enteromius mediosquamatus, Enteromius melanotaenia, Enteromius mimus, Enteromius miolepis, Enteromius mocoensis, Enteromius multilineatus, Enteromius musumbi, Enteromius neefi, Enteromius neglectus, Enteromius neumayeri, Enteromius nigeriensis, Enteromius nigrifilis, Enteromius nigroluteus, Enteromius niokoloensis, Enteromius nounensis, Enteromius nyanzae, Enteromius okae, Enteromius oligogrammus, Enteromius olivaceus, Enteromius owenae, Enteromius pallidus, Enteromius paludinosus, Enteromius papilio, Enteromius parablabes, Enteromius parajae, Enteromius pellegrini, Enteromius perince, Enteromius petchkovskyi, Enteromius pleurogramma, Enteromius pobeguini, Enteromius poechii, Enteromius prionacanthus, Enteromius profundus, Enteromius pseudotoppini, Enteromius pumilus, Enteromius punctitaeniatus, Enteromius pygmaeus, Enteromius quadralineatus, Enteromius quadrilineatus, Enteromius quadripunctatus, Enteromius raimbaulti, Enteromius rapax, Enteromius roussellei, Enteromius rouxi, Enteromius rubrostigma, Enteromius salessei, Enteromius serengetiensis, Enteromius sexradiatus, Enteromius seymouri, Enteromius stanleyi, Enteromius stauchi, Enteromius stigmatopygus, Enteromius subinensis, Enteromius sublineatus, Enteromius sylvaticus, Enteromius syntrechalepis, Enteromius taeniopleura, Enteromius taeniurus, Enteromius tanapelagius, Enteromius tegulifer, Enteromius tetraspilus, Enteromius tetrastigma, Enteromius teugelsi, Enteromius thamalakanensis, Enteromius thysi, Enteromius tiekoroi, Enteromius tomiensis, Enteromius tongaensis, Enteromius toppini, Enteromius traorei, Enteromius treurensis, Enteromius trimaculatus, Enteromius trinotatus, Enteromius trispiloides, Enteromius trispilomimus, Enteromius trispilopleura, Enteromius trispilos, Enteromius turkanae, Enteromius unitaeniatus, Enteromius urostigma, Enteromius usambarae, Enteromius vanderysti, Enteromius vandewallei, Enteromius venustus, Enteromius viktorianus, Enteromius viviparus, Enteromius walkeri, Enteromius wellmani, Enteromius yeiensis)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-16.8783 10.9799,-16.8618 10.97,-16.8618 11.0599,-16.9054 11.0599,-16.8783 10.9799))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008876-250827131500795/datasets/export for details.