cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8813009.v1
title: Data for: Measurement of ocular transmittance in living human eyes with a double-pass system

description: As pointed out by several authors, the double-pass (DP) image contains the effects of both aberrations and scattering. When the lower-order aberrations are corrected, the DP PSF in a normal eye is affected predominately by higher-order aberrations and light scatter. While the aberrations influence the light distribution at the central region of the DP image, the intraocular scattering causes an increment of the intensity further away from the central maximum of the image. Therefore, this study chose to analyze a peripheral portion of the DP PSF. The region of interest (ROI) chosen for the analysis was a ring between 25 to 35 minutes of arc, whose center was in the centroid of the spot of the cropped DP image (256x256 pixels).To determine the transmittance of the ocular media, a series of DP images were recorded, each one was taken at a different intensity of the laser diode, which was controlled by a supply voltage from 0 mV to 4000 mV. The gray level in the ROI increased as the intensity of the laser increased. The average of the scattering determined as a mean gray level intensity (which we will call hereafter double-pass scattering (DPS)) varies linearly with laser voltage. We have used the slope of the DPS/Laser Voltage line to derive an Ocular Transmittance Index (OTI). As the light had to cross the ocular media twice to reach the CCD sensor, it was expected that the OTI slope has a functional relationship with the transmittance (T), as follows: OTI ∝ T^2.The data set corresponds to the profiles of the double-pass images measured in different conditions: artificial eye with and without filters, artificial eye with induced defocus, subjects of Group A and subjects of Group B.The first column shows the angular distance in arc minutes, while the following columns show the radial profiles corresponding to each laser voltage.<br>
DOI: 10.6084/m9.figshare.8812832
title: CCDB_8042.jpg

description: Processed mosaic of a sagittal section through the brain of mouse model of glioma. To produce transformed cells, creGFAP mice were injected in the cortex with Ras/s.i.p53 virus and perfused after 2 weeks. In this system, GFP is introduced by the virus and expression is induced by an IRES site in the mRNA. Thus, the GFP gene is expressed whenever the virus infects a cell expressing GFAP (green). The section was immunolabeled for GFAP (red) and counterstained with DAPI (blue).
DOI: 10.6084/m9.figshare.8812886.v1
title: Experience of Chicagoland acute care hospitals in preparing for Ebola virus disease, 2014–2015

description: During the 2014–2015 Ebola Virus Disease (EVD) outbreak, hospitals in the United States selected personal protective equipment (PPE) and trained healthcare personnel (HCP) in anticipation of receiving EVD patients. To improve future preparations for high-consequence infectious diseases, it was important to understand factors that affected PPE selection and training in the context of the EVD outbreak. Semistructured interviews were conducted with HCP involved with decision-making during EVD preparations at acute care hospitals in the Chicago, IL area to gather information about the PPE selection and training process. HCP who received training were surveyed about elements of training and their perceived impact and overall experience by email invitation. A total of 28 HCP from 15 hospitals were interviewed, and 55 HCP completed the survey. Factors affecting PPE selection included: changing guidance, vendor supply, performance evaluations, and perceived risk and comfort for HCP. Cost did not affect selection. PPE acquisition challenges were mitigated by: sharing within hospital networks, reusing PPE during training, and improvising with existing PPE stock. Selected PPE ensembles were similar across sites. Training included hands-on activities with trained observers, instructional videos, and simulations/drills, which were felt to increase HCP confidence. Many felt refresher training would be helpful. Hands-on training was perceived to be effective, but there is a need to establish the appropriate frequency of refresher training frequency to maintain competence. Lacking confidence in the CDC guidance, interviewed trainers described turning to other sources of information and developing independent PPE evaluation and selection. Response to emerging and/or high consequence infectious diseases would be enhanced by transparent, risk-based guidance for PPE selection and training that addresses protection level, ease of use, ensembles, and availability.
DOI: 10.6084/m9.figshare.8812655
title: CCDB_7857.jpg

description: Processed mosaic of a sagittal section through the brain of mouse model of glioma. To produce transformed cells, creGFAP mice were injected in the cortex with Ras/s.i.p53 virus and perfused after 5 weeks. In this system, GFP is introduced by the virus and expression is induced by an IRES site in the mRNA. Thus, the GFP gene is expressed whenever the virus infects a cell expressing GFAP (green). The section was immunolabeled for GFAP (red) and counterstained with DAPI (blue). See MP:8063 for a section from the same brain labeled with nestin.
DOI: 10.6084/m9.figshare.8812721
title: CCDB_8011.jpg

description: Processed mosaic of a sagittal section through the brain of mouse model of glioma. To produce transformed cells, creGFAP mice were injected in the cortex with Ras/s.i.p53 virus and perfused after 8 weeks. In this system, GFP is introduced by the virus and expression is induced by an IRES site in the mRNA. Thus, the GFP gene is expressed whenever the virus infects a cell expressing GFAP (green). The section was immunolabeled for GFAP (red) and counterstained with DAPI (blue). See MP:8166 for a section from the same brain labeled with nestin.
DOI: 10.6084/m9.figshare.8812577
title: CCDB_7796.jpg

description: File containing the merged fluorescent-DIC imaging for each time point, where the fluorescent image is a maximum intensity projection of the z series collected at each time point. Each time point is represented as a "slice" in the volume in IMOD format.
DOI: 10.6084/m9.figshare.8812721.v1
title: CCDB_8011.jpg

description: Processed mosaic of a sagittal section through the brain of mouse model of glioma. To produce transformed cells, creGFAP mice were injected in the cortex with Ras/s.i.p53 virus and perfused after 8 weeks. In this system, GFP is introduced by the virus and expression is induced by an IRES site in the mRNA. Thus, the GFP gene is expressed whenever the virus infects a cell expressing GFAP (green). The section was immunolabeled for GFAP (red) and counterstained with DAPI (blue). See MP:8166 for a section from the same brain labeled with nestin.
DOI: 10.6084/m9.figshare.8812832.v1
title: CCDB_8042.jpg

description: Processed mosaic of a sagittal section through the brain of mouse model of glioma. To produce transformed cells, creGFAP mice were injected in the cortex with Ras/s.i.p53 virus and perfused after 2 weeks. In this system, GFP is introduced by the virus and expression is induced by an IRES site in the mRNA. Thus, the GFP gene is expressed whenever the virus infects a cell expressing GFAP (green). The section was immunolabeled for GFAP (red) and counterstained with DAPI (blue).
DOI: 10.6084/m9.figshare.8812655.v1
title: CCDB_7857.jpg

description: Processed mosaic of a sagittal section through the brain of mouse model of glioma. To produce transformed cells, creGFAP mice were injected in the cortex with Ras/s.i.p53 virus and perfused after 5 weeks. In this system, GFP is introduced by the virus and expression is induced by an IRES site in the mRNA. Thus, the GFP gene is expressed whenever the virus infects a cell expressing GFAP (green). The section was immunolabeled for GFAP (red) and counterstained with DAPI (blue). See MP:8063 for a section from the same brain labeled with nestin.
DOI: 10.6084/m9.figshare.8810594
title: CCDB_7759.jpg

description: Mosaic reconstruction imaged using spinning disk confocal microscopy of a flat mount of retina showing retinal ganglion cells retrogradely labeled via fluorogold injection into the superior colliculus in an astrocyte specific Nf1 conditional knock out mouse. Details may be found in Kim et al., Neuroscience. 2010 Sep 29;170(1):178-88.
DOI: 10.6084/m9.figshare.8811704
title: CCDB_7769.jpg

description: Maximum intensity projection of a z series collected at a single time point of MDCK cells transfected with GFP-CX43
DOI: 10.6084/m9.figshare.8812577.v1
title: CCDB_7796.jpg

description: File containing the merged fluorescent-DIC imaging for each time point, where the fluorescent image is a maximum intensity projection of the z series collected at each time point. Each time point is represented as a "slice" in the volume in IMOD format.
DOI: 10.6084/m9.figshare.8811704.v1
title: CCDB_7769.jpg

description: Maximum intensity projection of a z series collected at a single time point of MDCK cells transfected with GFP-CX43
DOI: 10.6084/m9.figshare.8810594.v1
title: CCDB_7759.jpg

description: Mosaic reconstruction imaged using spinning disk confocal microscopy of a flat mount of retina showing retinal ganglion cells retrogradely labeled via fluorogold injection into the superior colliculus in an astrocyte specific Nf1 conditional knock out mouse. Details may be found in Kim et al., Neuroscience. 2010 Sep 29;170(1):178-88.
DOI: 10.6084/m9.figshare.8801066
title: interg_feat_math_skills.xlsx

description: Data from the project "Learning mathematics and cognitive bases: a study on parents and children". Proposer Paola Bonifacci
DOI: 10.6084/m9.figshare.8800982
title: Lead and cadmium in foods/drinking water from Slovenian market/taps: Estimation of overall chronic dietary exposure and health risks

description: Approximately 3000 food samples from the Slovenian market and 2500 drinking (tap) water samples in the period 2011 − 2016 were evaluated for the presence of toxic elements lead (Pb) and cadmium (Cd) and the overall chronic dietary exposure was assessed for each element. The highest mean concentrations were found for Pb in products for special nutritional use – dietary supplements (0.383 mg/kg) and for Cd in fish and seafood (0.117 mg/kg). The consumption data were obtained from the national study of the household budget and from the European Food Safety Authority (EFSA) summary statistics. Chronic dietary exposure was estimated deterministically. The average Pb and Cd intakes from food and drinking (tap) water ranged for children from 0.90 to 1.021 µg/kg bw/day and 4.65 to 5.65 µg/kg bw/week, respectively, and for adults, including adolescents, from 0.40 to 0.53 µg/kg bw/day and 1.98 to 2.82 µg/kg bw/week, respectively. The high consumption of cereal-based foods and vegetables contributed most to overall Pb and Cd intake in the majority of the age groups. The exposure to Pb was generally lower and that to Cd was higher compared to the average EU values. The most exposed were children, as the health-based guidance values were exceeded for both elements, which indicates a health concern. An important contribution to Cd exposure can be attributed to grains and potatoes grown in Slovenia, where the soil contains more Cd than that in other EU countries. Further efforts to reduce Pb and Cd intake are required to minimize potential health risks.
DOI: 10.6084/m9.figshare.8801066.v1
title: interg_feat_math_skills.xlsx

description: Data from the project "Learning mathematics and cognitive bases: a study on parents and children". Proposer Paola Bonifacci
DOI: 10.6084/m9.figshare.8800673
title: Shigella metabolic models

description: These models were generated for the manuscript "Impact of insertion sequences on convergent evolution of Shigella species".
DOI: 10.6084/m9.figshare.8800982.v1
title: Lead and cadmium in foods/drinking water from Slovenian market/taps: Estimation of overall chronic dietary exposure and health risks

description: Approximately 3000 food samples from the Slovenian market and 2500 drinking (tap) water samples in the period 2011 − 2016 were evaluated for the presence of toxic elements lead (Pb) and cadmium (Cd) and the overall chronic dietary exposure was assessed for each element. The highest mean concentrations were found for Pb in products for special nutritional use – dietary supplements (0.383 mg/kg) and for Cd in fish and seafood (0.117 mg/kg). The consumption data were obtained from the national study of the household budget and from the European Food Safety Authority (EFSA) summary statistics. Chronic dietary exposure was estimated deterministically. The average Pb and Cd intakes from food and drinking (tap) water ranged for children from 0.90 to 1.021 µg/kg bw/day and 4.65 to 5.65 µg/kg bw/week, respectively, and for adults, including adolescents, from 0.40 to 0.53 µg/kg bw/day and 1.98 to 2.82 µg/kg bw/week, respectively. The high consumption of cereal-based foods and vegetables contributed most to overall Pb and Cd intake in the majority of the age groups. The exposure to Pb was generally lower and that to Cd was higher compared to the average EU values. The most exposed were children, as the health-based guidance values were exceeded for both elements, which indicates a health concern. An important contribution to Cd exposure can be attributed to grains and potatoes grown in Slovenia, where the soil contains more Cd than that in other EU countries. Further efforts to reduce Pb and Cd intake are required to minimize potential health risks.
DOI: 10.6084/m9.figshare.8800460
title: IJAIS Journal Citations in Web of Science and Scopus

description: This single journal study investigated the predatory journal landscape in the information systems field, by analysing the <i>International Journal of Applied Information Systems </i>(IJAIS). The IJAIS was viewed from a bibliometric and citation perspective. The bibliometric study examined article productivity, authorship patterns and collaboration. An analysis was performed of 728 articles published in 11 volumes and 104 issues of IJAIS<b> </b>in the period 2012 to 2017. The citation study analysed citations to IJAIS papers in Scopus and Web of Science. A cited reference search was conducted in Scopus and Web of Science, and IJAIS papers cited in the list of references or works cited in Scopus or Web of Science papers were retrieved. Results of the bibliometric study revealed that the average number of articles per volume in IJAIS was 62. 1837 authors contributed to this journal. The journal displays a collaborative authorship pattern with 627 (86.13%) articles that were co-authored, compared to 101 (13.87%) that were single authored. The citation study showed that 751 Scopus papers cite IJAIS, of which 18 were review papers, compared to 153 Web of Science papers that cite IJAIS of which 9 were review papers. Of the 728 IJAIS articles published, 198 (27.2%) papers were cited in Scopus and Web of Science combined.
DOI: 10.6084/m9.figshare.8800673.v1
title: Shigella metabolic models

description: These models were generated for the manuscript "Impact of insertion sequences on convergent evolution of Shigella species".
DOI: 10.6084/m9.figshare.8799281
title: Trends and patterns in fatal US motorcycle crashes, 2000–2016

description: <b>Objective:</b> To investigate trends of motorcyclist fatalities and identify at-risk populations by motorcyclist demographics and crash characteristics. <b>Methods:</b> We used the Fatality Analysis Reporting System (FARS) database (2000–2016) to track fatality rate trends, which were quantified by using Poisson mixed-effects regression models comparing 2000–2001 and 2007–2008, as well as 2009–2010 and 2015–2016. <b>Results:</b> The overall fatality rate per 100,000 population increased from 2000 to 2016, defined by two trend lines—before and after the economic recession in 2008–2009. The overall fatality rate ratio between 2000–2001 and 2007–2008 was 1.60 [95% Confidence Interval (CI): 1.51–1.70], and between 2009–2010 and 2015–2016 was 1.09 (95% CI: 1.02–1.18). Fatality rates increased among all age groups, particularly for motorcyclists aged 60 and older. Those aged 18–29 had the highest fatality rates overall. Age-and-sex standardized state fatality rates were consistently highest in Wyoming, South Dakota, and South Carolina and lowest in Massachusetts, New York and New Jersey. <b>Conclusion:</b> Motorcycle fatality rates increased overall and across all age groups between 2000 and 2016. Fatalities for the oldest riders showed the steadiest increasing trends. Results highlight the continued public health burden of motorcyclist fatalities and, by extension, the importance of improving motorcycle safety.
DOI: 10.6084/m9.figshare.8799281.v1
title: Trends and patterns in fatal US motorcycle crashes, 2000–2016

description: <b>Objective:</b> To investigate trends of motorcyclist fatalities and identify at-risk populations by motorcyclist demographics and crash characteristics. <b>Methods:</b> We used the Fatality Analysis Reporting System (FARS) database (2000–2016) to track fatality rate trends, which were quantified by using Poisson mixed-effects regression models comparing 2000–2001 and 2007–2008, as well as 2009–2010 and 2015–2016. <b>Results:</b> The overall fatality rate per 100,000 population increased from 2000 to 2016, defined by two trend lines—before and after the economic recession in 2008–2009. The overall fatality rate ratio between 2000–2001 and 2007–2008 was 1.60 [95% Confidence Interval (CI): 1.51–1.70], and between 2009–2010 and 2015–2016 was 1.09 (95% CI: 1.02–1.18). Fatality rates increased among all age groups, particularly for motorcyclists aged 60 and older. Those aged 18–29 had the highest fatality rates overall. Age-and-sex standardized state fatality rates were consistently highest in Wyoming, South Dakota, and South Carolina and lowest in Massachusetts, New York and New Jersey. <b>Conclusion:</b> Motorcycle fatality rates increased overall and across all age groups between 2000 and 2016. Fatalities for the oldest riders showed the steadiest increasing trends. Results highlight the continued public health burden of motorcyclist fatalities and, by extension, the importance of improving motorcycle safety.
DOI: 10.6084/m9.figshare.8799266
title: Automobile injury trends in the contemporary fleet: Belted occupants in frontal collisions

description: <b>Objective:</b> As vehicle safety technologies and evaluation procedures advance, it is pertinent to periodically evaluate injury trends to identify continuing and emerging priorities for intervention. This study examined detailed injury distributions and injury risk trends in belted occupants in frontal automobile collisions (10 o’clock to 2 o’clock) using NASS-CDS (1998–2015). <b>Methods:</b> Injury distributions were examined by occupant age and vehicle model year (stratified at pre- and post-2009). Logistic regression models were developed to examine the effects of various factors on injury risk (by body region), controlling for delta-V, sex, age, height, body mass index (BMI), vehicle model year (again stratified at 2009). <b>Results:</b> Among other observations, these analyses indicate that newer model year vehicles (model year [MY] 2009 and later) carry less risk of Abbreviated Injury Scale (AIS) 2+ and AIS 3+ injury compared to older model year vehicles, with odds ratios of 0.69 (AIS 2+) and 0.45 (AIS 3+). The largest reductions in risk between newer model year vehicles and older model year vehicles occur in the lower extremities and in the risk of skull fracture. There is no statistically significant change in risk of AIS 3+ rib fracture or sternum injury between model year categories. Females are at greater risk of AIS 2+ and AIS 3+ injury compared to males, with increased risk across most injury types. <b>Conclusions:</b> For belted occupants in frontal collisions, substantial reductions in injury risk have been realized in many body regions in recent years. Risk reduction in the thorax has lagged other body regions, resulting in increasing prevalence among skeletal injuries in newer model year vehicles (especially in the elderly). Injuries also remain common in the arm and hand/wrist for all age ranges studied. These results provide insight into where advances in the field have made gains in occupant protection and what injury types remain to be addressed.
DOI: 10.6084/m9.figshare.8800460.v1
title: IJAIS Journal Citations in Web of Science and Scopus

description: This single journal study investigated the predatory journal landscape in the information systems field, by analysing the <i>International Journal of Applied Information Systems </i>(IJAIS). The IJAIS was viewed from a bibliometric and citation perspective. The bibliometric study examined article productivity, authorship patterns and collaboration. An analysis was performed of 728 articles published in 11 volumes and 104 issues of IJAIS<b> </b>in the period 2012 to 2017. The citation study analysed citations to IJAIS papers in Scopus and Web of Science. A cited reference search was conducted in Scopus and Web of Science, and IJAIS papers cited in the list of references or works cited in Scopus or Web of Science papers were retrieved. Results of the bibliometric study revealed that the average number of articles per volume in IJAIS was 62. 1837 authors contributed to this journal. The journal displays a collaborative authorship pattern with 627 (86.13%) articles that were co-authored, compared to 101 (13.87%) that were single authored. The citation study showed that 751 Scopus papers cite IJAIS, of which 18 were review papers, compared to 153 Web of Science papers that cite IJAIS of which 9 were review papers. Of the 728 IJAIS articles published, 198 (27.2%) papers were cited in Scopus and Web of Science combined.
DOI: 10.6084/m9.figshare.8799239
title: Spatial analysis of mortality rate of pedestrian accidents in Iran during 2012–2013

description: <b>Objectives:</b> Considering the high mortality rate of pedestrians in traffic accidents in Iran, the present study aimed to determine the high-risk and low-risk areas of accidents resulting in pedestrian deaths and the spatial analysis of their mortality rates. <b>Methods:</b> This cross-sectional study included 4,371 deceased pedestrians reported by the Legal Medicine Organization in Iran from March 2012 to March 2013. For spatial analysis, the collected data were entered into ArcGIS software version 10.2 and a spatial map of the mortality rate was drawn according to the distribution of data in the provinces. Using this software, high-risk and low-risk areas were identified by calculating the spatial autocorrelation of the data. The Moran’s index of road accident patterns was surveyed and high-risk and low-risk points were identified using the local Getis index. <b>Results:</b> The age-standardized incidence rate was 6.8 per 100,000. After analyzing the data using ArcGIS software, the local Moran’s index showed a cluster pattern with a high mortality rate in 3 provinces of Mazandaran, Gilan, and Qazvin. In identifying high-risk and low-risk points, the local Getis index showed 3 hot spots with a confidence interval of 99% in Qom, Qazvin, and Mazandaran and 5 hot spots with a 95% confidence interval in Markazi, Tehran, Zanjan, Gilan, and Golestan provinces. <b>Conclusions:</b> According to the cluster pattern of accidents in the 3 provinces and the presence of hot spots in 9 provinces, it is necessary to identify factors that increase the risk of death in the study provinces in order to reduce the mortality rate among pedestrians due to traffic accidents. Therefore, to reduce the pedestrian mortality rate, especially in high-risk provinces, some studies need to be conducted to determine the risk factors in pedestrian mortality.
DOI: 10.6084/m9.figshare.8799221
title: DrugZ results

description: Data folder containing drugZ (chemogenetic interactions) results.