cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18231456
title: Dataset - Hus och gård i det förurbana samhället

description: This dataset represents the output of the project Hus och gård i det förurbana samhället (Eng: House and Farm in the Pre-Urban Society), led by Ola Kyhlberg togheter with Hans Göthberg and Ann Vinberg, published in 1995.

The project was initiated by the Swedish National Heritage Board (Swe: Riksantikvarieämbetet, RAÄ) in a broad collaboration with several partners involved in Swedish contract archaeology. The aim was to provide an overview and knowledge base concerning houses and farms that had been archaeologically investigated in Sweden. The results were published in an overview with articles on different topics and a catalogue. The aim was also to make the data available, but in the 1990’s the possibilities of doing that in a structured way was limited.

As part of the Swedish National Infrastructure for Digital Archaeology (Swedigarch), the database has been reworked and converted to open formats, and is hereby being published. Data is provided both in original format, as a zip containing a number of dBase files. Swedigarch has converted this data to a GeoPackage that can be opened directly in GIS software. As part of this process, coordinates, that originally were in shortened RT 90 format (ESPG 3021), have been transformed to SWEREF99 TM (EPSG 3006). In addition to that, the spatial location has been adjusted to match the corresponding site, as described in the database. Some of the coordinates did not match the location of the site, and where manually moved to match the centroid of the site as provided by the RAÄ Kulturhistoriska lämningar (https://www.raa.se/hitta-information/oppna-data/oppna-data-portal/). This is the base for the geospatial data of the location, and in additional attributes in the GPKG (“nyX” and “nyY”) in the layer ‘Hus och gård punkter sweref_fixed_location’ (n=473). This was done carefully, but some errors might still exist and there might be differences between the location of sites since the 1990 that have not been identified.

The layer ‘Hus och gård punkter sweref_not_fixed_location’ (n=58) it has not been possible to determine the exact location of the excavation. The status of the location is given by the variable “fixed_location”. Note that the geospatial data is only one point per excavation.

A publication with articles relating to the creation of this dataset and its potential use:

Göthberg, H., Kyhlberg, O., & Vinberg, A. (Eds.). (1995). Hus & gård i det förurbana samhället. Artikeldel. Retrieved from https://urn.kb.se/resolve?urn=urn:nbn:se:raa:diva-5500

A publication with a catalogue of the houses:

Kyhlberg, O., Göthberg, H., & Vinberg, A. (Eds.). (1995). Hus & gård i det förurbana samhället. Katalogdel. Retrieved from https://urn.kb.se/resolve?urn=urn:nbn:se:raa:diva-5410

 

In addition to this, Swedigarch is currently collecting data about houses excavated later than this, to be published soon. We will link to that dataset from this page when it is published.
DOI: 10.5281/zenodo.18328830
title: Trixis ochroleuca f. incisa Hassl. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:56
DOI: 10.5281/zenodo.18328829
title: Trixis ochroleuca f. incisa Hassl. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:56
DOI: 10.15468/dl.asy6mk
title: Occurrence Download

description: A dataset containing 2823 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chionochloa pallens)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is Oceania"
 ]
}

 The dataset includes 2823 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002797-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5ugfh4
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Honduras",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "StateProvince is one of (Gracias a Dios Department, Gracias a Dios, Gracias A Dios, Gracias Adios, Gracias a Dios (La Mosquitia), Gracias a Dios (department), Gracias a Dios Dept., Gracias a dios)",
 "TaxonKey is Crax rubra"
 ]
}

 The dataset includes 51 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002799-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17203394
title: Simlation for META-DIFF benchmark

description: Most of the files necessary to replicate our work: simulation of benchmark datasets, scripts to build tables, and scripts to produce figures using the tables.

Simulated datasets for META-DIFF benchmark:



Contains abundances profiles

reference genomes

unique k-mers of targeted species

config files (which have a seed for reporoductibility)

scripts to produce replicates of abundances profiles.

results from the search of functions in unitigs for the functional recall


Figures:



contains scripts to produce tables 

scripts to apply univariate analysis methods (aldex2, ancombc, deseq2, limma, wilcoxon's test)

tables

script to generate figures from the tables


The bash and R scripts all have CLI arguments and take --help to display option (no argument also prints help for the bash scripts). Script Diff_Bif_metrics.sh executes Kmidff, Bifrost and the metrics script to make it easier. The colored DBG is too heavy for github and was uploaded here, it can be produced from the files on github.

NOTE: we chose to upload config files instead of the whole simulated dataset as it weights several hundred Gigabytes, and as CAMISIM is a published tool with replication in mind.
DOI: 10.5281/zenodo.18328460
title: Simlation for META-DIFF benchmark

description: Most of the files necessary to replicate our work: simulation of benchmark datasets, scripts to build tables, and scripts to produce figures using the tables.

Simulated datasets for META-DIFF benchmark:



Contains abundances profiles

reference genomes

unique k-mers of targeted species

config files (which have a seed for reporoductibility)

scripts to produce replicates of abundances profiles.

results from the search of functions in unitigs for the functional recall


Figures:



contains scripts to produce tables 

scripts to apply univariate analysis methods (aldex2, ancombc, deseq2, limma, wilcoxon's test)

tables

script to generate figures from the tables


The bash and R scripts all have CLI arguments and take --help to display option (no argument also prints help for the bash scripts). Script Diff_Bif_metrics.sh executes Kmidff, Bifrost and the metrics script to make it easier. The colored DBG is too heavy for github and was uploaded here, it can be produced from the files on github.

NOTE: we chose to upload config files instead of the whole simulated dataset as it weights several hundred Gigabytes, and as CAMISIM is a published tool with replication in mind.
DOI: 10.15468/dl.sm96s8
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cyperus iria",
 "Year 1970-2000"
 ]
}

 The dataset includes 137 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002800-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18328837
title: QANDLI DIABET 2-TUR BEMORLARDA GLIKEMIK KOMPENSATSIYANI BAHOLASH

description: Tezisda 2-toifa qandli diabet bilan og‘rigan bemorlarda glikemik kompensatsiya darajasi tahlil qilinadi. Tadqiqotda qand miqdori va glyukoza darajasini nazorat qilish, shuningdek, glikemik indeks va HbA1c ko‘rsatkichlari asosida bemorlarning kompensatsiya holati baholanadi. Natijalar shuni ko‘rsatadiki, bemorlarning kundalik nazorati va individual davolash strategiyalari glikemik barqarorlikni ta’minlashda muhim ahamiyatga ega.
DOI: 10.5281/zenodo.18328836
title: QANDLI DIABET 2-TUR BEMORLARDA GLIKEMIK KOMPENSATSIYANI BAHOLASH

description: Tezisda 2-toifa qandli diabet bilan og‘rigan bemorlarda glikemik kompensatsiya darajasi tahlil qilinadi. Tadqiqotda qand miqdori va glyukoza darajasini nazorat qilish, shuningdek, glikemik indeks va HbA1c ko‘rsatkichlari asosida bemorlarning kompensatsiya holati baholanadi. Natijalar shuni ko‘rsatadiki, bemorlarning kundalik nazorati va individual davolash strategiyalari glikemik barqarorlikni ta’minlashda muhim ahamiyatga ega.
DOI: 10.34740/kaggle/dsv/14572153
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.gba5ne
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((116.728 1.702182, 116.657706 1.696614, 116.589145 1.680046, 116.524004 1.652888, 116.463889 1.615808, 116.410281 1.56972, 116.364499 1.515759, 116.32767 1.455254, 116.300701 1.389696, 116.284255 1.320698, 116.278736 1.249961, 116.284279 1.179226, 116.300746 1.110234, 116.327732 1.044684, 116.364572 0.98419, 116.410358 0.930241, 116.463962 0.8841639999999999, 116.524066 0.847095, 116.58919 0.819945, 116.65773 0.803383, 116.728 0.797817, 116.79827 0.803383, 116.86681 0.819945, 116.931934 0.847095, 116.992038 0.8841639999999999, 117.045642 0.930241, 117.091428 0.98419, 117.128268 1.044684, 117.155254 1.110234, 117.171721 1.179226, 117.177264 1.249961, 117.171745 1.320698, 117.155299 1.389696, 117.12833 1.455254, 117.091501 1.515759, 117.045719 1.56972, 116.992111 1.615808, 116.931996 1.652888, 116.866855 1.680046, 116.798294 1.696614, 116.728 1.702182))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002803-260120142942310/datasets/export for details.
DOI: 10.15468/dl.ukctew
title: Occurrence Download

description: A dataset containing 2356 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((-71.95999999999999 5.540146, -72.03059 5.534575, -72.09943800000001 5.518001, -72.164845 5.490832, -72.225199 5.453738, -72.279011 5.407635, -72.324956 5.35366, -72.361904 5.293144, -72.388946 5.227577, -72.40542000000001 5.158577, -72.410923 5.087842, -72.405323 5.017115, -72.388761 4.948137, -72.361649 4.882604, -72.324657 4.822131, -72.278696 4.768204, -72.22490000000001 4.722149, -72.164591 4.685098, -72.099253 4.657963, -72.03049300000001 4.641411, -71.95999999999999 4.635848, -71.88950699999999 4.641411, -71.820747 4.657963, -71.755409 4.685098, -71.6951 4.722149, -71.64130400000001 4.768204, -71.595343 4.822131, -71.558351 4.882604, -71.531239 4.948137, -71.51467700000001 5.017115, -71.509077 5.087842, -71.51458 5.158577, -71.531054 5.227577, -71.55809600000001 5.293144, -71.595044 5.35366, -71.640989 5.407635, -71.694801 5.453738, -71.755155 5.490832, -71.820562 5.518001, -71.88941 5.534575, -71.95999999999999 5.540146))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 2356 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002801-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18328749
title: envar package source code

description: Source code for peer-review, for the paper "envar: an R package to retrieve and process environmental variables for macroecology and biogeography".
DOI: 10.5281/zenodo.18328750
title: envar package source code

description: Source code for peer-review, for the paper "envar: an R package to retrieve and process environmental variables for macroecology and biogeography".
DOI: 10.3886/e244525
title: NAFTA and drug-related violence in Mexico

description: We study how NAFTA changed the geography of violence in Mexico. We propose that this open border policy increased trafficking profits of Mexican cartels, resulting in violent competition among them. We test this hypothesis by comparing changes in drug-related homicides after NAFTA's introduction in 1994 across municipalities with and without drug-trafficking routes. Routes are predicted least cost paths connecting municipalities with a recent history of detected drug trafficking with U.S. land ports of entry. On these routes, homicides increase by 2.1 per 100,000 inhabitants, which is equivalent to 26\% of the pre-NAFTA mean. These results cannot be explained by changes in worker's opportunity costs of using violence resulting from the trade shock.<br>
DOI: 10.3886/e244525v1
title: NAFTA and drug-related violence in Mexico

description: We study how NAFTA changed the geography of violence in Mexico. We propose that this open border policy increased trafficking profits of Mexican cartels, resulting in violent competition among them. We test this hypothesis by comparing changes in drug-related homicides after NAFTA's introduction in 1994 across municipalities with and without drug-trafficking routes. Routes are predicted least cost paths connecting municipalities with a recent history of detected drug trafficking with U.S. land ports of entry. On these routes, homicides increase by 2.1 per 100,000 inhabitants, which is equivalent to 26\% of the pre-NAFTA mean. These results cannot be explained by changes in worker's opportunity costs of using violence resulting from the trade shock.<br>
DOI: 10.7274/29508464
title: Capacity Development Priorities for Enduring Biodiversity Conservation: A New Methodology with Evidence from Peru - Dataset

description: Capacity development is essential for long-term biodiversity conservation. Yet knowledge of conservation capacity development needs and priorities remains limited, particularly in low- and middle-income countries with high biodiversity and limited institutional capacity. This study addresses this gap by identifying and analyzing priorities identified by conservation professionals in Peru. Using Q methodology and open-ended surveys, we identified three distinct perspectives on capacity development priorities among 27 conservation professionals working in Peru: strengthening legal enforcement and financing, empowering Indigenous Peoples and Local Communities, and embedding conservation values in public norms. These perspectives reflect fundamentally different theories of change, yet converge in their call for system-level interventions—addressing governance structures, unequal power dynamics, and cultural norms. The findings emphasize that capacity development is inherently political and context-dependent, requiring attention to historical legacies, social values, and institutional barriers. This study responds to global calls for greater inclusion of local perspectives and offers a replicable approach for grounding conservation policy in the lived experience of practitioners. As international funders and policymakers seek to align support with local realities to advance conservation goals, these findings underscore the need to move beyond one-size-fits-all capacity development toward more targeted approaches that simultaneously address the larger context in which conservation practice is embedded.
DOI: 10.7274/29508464.v1
title: Capacity Development Priorities for Enduring Biodiversity Conservation: A New Methodology with Evidence from Peru - Dataset

description: Capacity development is essential for long-term biodiversity conservation. Yet knowledge of conservation capacity development needs and priorities remains limited, particularly in low- and middle-income countries with high biodiversity and limited institutional capacity. This study addresses this gap by identifying and analyzing priorities identified by conservation professionals in Peru. Using Q methodology and open-ended surveys, we identified three distinct perspectives on capacity development priorities among 27 conservation professionals working in Peru: strengthening legal enforcement and financing, empowering Indigenous Peoples and Local Communities, and embedding conservation values in public norms. These perspectives reflect fundamentally different theories of change, yet converge in their call for system-level interventions—addressing governance structures, unequal power dynamics, and cultural norms. The findings emphasize that capacity development is inherently political and context-dependent, requiring attention to historical legacies, social values, and institutional barriers. This study responds to global calls for greater inclusion of local perspectives and offers a replicable approach for grounding conservation policy in the lived experience of practitioners. As international funders and policymakers seek to align support with local realities to advance conservation goals, these findings underscore the need to move beyond one-size-fits-all capacity development toward more targeted approaches that simultaneously address the larger context in which conservation practice is embedded.
DOI: 10.15468/dl.zw8vpz
title: Occurrence Download

description: A dataset containing 10918 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "DatasetKey is Earthworms and potworms in Dutch soils from the National Biological Soil Monitoring project 1997-2014",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 10918 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002804-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18328854
title: Trixis P.Browne. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:56
DOI: 10.5281/zenodo.18328855
title: Trixis P.Browne. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:56
DOI: 10.5281/zenodo.18328848
title: ҚАНДЛИ ДИАБЕТ 1-ТУР БИЛАН ОҒРИГАН ЎСМИР ЁШ ҚИЗЛАРДА ПОЛИЦИСТИК ТУХУМДОН СИНДРОМИ УЧРАШ ҲОЛАТЛАРИ

description: Қандли диабет 1-тур (ҚД1) — аутоиммун эндокрин касаллик бўлиб, ўсмир ёшда репродуктив тизим шаклланишига салбий таъсир кўрсатади. Мазкур ишда ҚД1 билан оғриган ўсмир қизларда полицистик тухумдон синдроми (ПТС) учраш хусусиятлари таҳлил қилинган.
DOI: 10.5281/zenodo.18328849
title: ҚАНДЛИ ДИАБЕТ 1-ТУР БИЛАН ОҒРИГАН ЎСМИР ЁШ ҚИЗЛАРДА ПОЛИЦИСТИК ТУХУМДОН СИНДРОМИ УЧРАШ ҲОЛАТЛАРИ

description: Қандли диабет 1-тур (ҚД1) — аутоиммун эндокрин касаллик бўлиб, ўсмир ёшда репродуктив тизим шаклланишига салбий таъсир кўрсатади. Мазкур ишда ҚД1 билан оғриган ўсмир қизларда полицистик тухумдон синдроми (ПТС) учраш хусусиятлари таҳлил қилинган.
DOI: 10.5281/zenodo.18328856
title: Trifolium pallidum Waldst. & Kit. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:55
DOI: 10.5281/zenodo.18328857
title: Trifolium pallidum Waldst. & Kit. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:55
DOI: 10.15468/dl.bkq5cn
title: Occurrence Download

description: A dataset containing 31236 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Quercus agrifolia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 31236 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002805-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gpdtum
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Cuba",
 "TaxonKey is Microphis lineatus"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002806-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nucuqb
title: Occurrence Download

description: A dataset containing 1456219 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 {
 "or" : [
 "InstitutionKey is not null",
 "CollectionKey is not null"
 ]
 },
 "BasisOfRecord is one of (Specimen, Fossil, Material sample, Living Specimen, Material citation)"
 ]
 },
 {
 "and" : [
 "InstitutionKey is one of (0e919a55-08d3-4bd2-aec1-200858fafd92, 6a6ac6c5-1b8a-48db-91a2-f8661274ff80, 1d808a7c-1f9e-4379-9616-edb749ecf10e)",
 {
 "and" : [
 "EventDate is greater than or equal to 2000-01-01"
 ]
 },
 "BasisOfRecord is one of (Specimen)"
 ]
 }
 ]
}

 The dataset includes 1456219 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002796-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e234222
title: Data and Code for: Zero-Sum Thinking and the Roots of U.S. Political Differences

description: We investigate the origins and implications of zero-sum thinking: the belief that gains for one individual or group tend to come at the cost of others. Using a new survey of 20,400 U.S. residents, we measure zero-sum thinking, political preferences, policy views, and a rich array of ancestral information spanning four generations. We find that a more zero-sum mindset is strongly associated with more support for government redistribution, race- and gender-based affirmative action, and more restrictive immigration policies. Zero-sum thinking can be traced back to the experiences of both the individual and their ancestors, encompassing factors such as the degree of intergenerational upward mobility they experienced, whether they immigrated to the United States or lived in a location with more immigrants, and whether they were enslaved or lived in a location with more enslavement.
description: Sample of about 20,400 individuals, representative of the adult population of the United States.