cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/c5q-kqn-601
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/26c-kkb-y56
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fp2-jqe-ax1
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29455783.v1
title: Additional file 16 of Single-cell transcriptomics link gene expression signatures to clinicopathological features of gonadotroph and lactotroph PitNET

description: Supplementary Material 16.
DOI: 10.3535/9kd-k5l-w58
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dy5-tar-f2b
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9m7-kac-86n
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qdy-q61-1gc
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r9g-rm1-apk
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/frs-j54-0gk
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lwl-587-cnd
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9ed-0n4-t38
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yqa-l6a-ylq
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8f6-4x8-8cx
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zdz-p45-t3c
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fqe-kjp-dfs
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fat-fkb-0mq
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y12-3se-5he
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2q5-qgg-r9j
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/54m-bpq-dh1
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7fl-h79-e81
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n37-my5-fea
title: Wichmannia Ruschka, 1916

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e0w-1hl-pgn
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kqj-g06-0pq
title: Wichmannia Ruschka, 1916

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29455762.v1
title: Additional file 9 of Single-cell transcriptomics link gene expression signatures to clinicopathological features of gonadotroph and lactotroph PitNET

description: Supplementary Material 9.
DOI: 10.3535/xth-4qt-zqg
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29455768
title: Additional file 11 of Single-cell transcriptomics link gene expression signatures to clinicopathological features of gonadotroph and lactotroph PitNET

description: Supplementary Material 11.
DOI: 10.3535/tqz-gjx-gnn
title: Halacaridae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xs3-lh7-4dk
title: Halacaridae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29455768.v1
title: Additional file 11 of Single-cell transcriptomics link gene expression signatures to clinicopathological features of gonadotroph and lactotroph PitNET

description: Supplementary Material 11.
DOI: 10.6084/m9.figshare.29455771
title: Additional file 12 of Single-cell transcriptomics link gene expression signatures to clinicopathological features of gonadotroph and lactotroph PitNET

description: Supplementary Material 12.
DOI: 10.6084/m9.figshare.29455771.v1
title: Additional file 12 of Single-cell transcriptomics link gene expression signatures to clinicopathological features of gonadotroph and lactotroph PitNET

description: Supplementary Material 12.
DOI: 10.6084/m9.figshare.29455774
title: Additional file 13 of Single-cell transcriptomics link gene expression signatures to clinicopathological features of gonadotroph and lactotroph PitNET

description: Supplementary Material 13.
DOI: 10.6084/m9.figshare.29455774.v1
title: Additional file 13 of Single-cell transcriptomics link gene expression signatures to clinicopathological features of gonadotroph and lactotroph PitNET

description: Supplementary Material 13.
DOI: 10.3535/sqe-xyv-2lw
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x8c-bp8-efg
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29455777.v1
title: Additional file 14 of Single-cell transcriptomics link gene expression signatures to clinicopathological features of gonadotroph and lactotroph PitNET

description: Supplementary Material 14.
DOI: 10.6084/m9.figshare.29455780
title: Additional file 15 of Single-cell transcriptomics link gene expression signatures to clinicopathological features of gonadotroph and lactotroph PitNET

description: Supplementary Material 15.
DOI: 10.6084/m9.figshare.29455780.v1
title: Additional file 15 of Single-cell transcriptomics link gene expression signatures to clinicopathological features of gonadotroph and lactotroph PitNET

description: Supplementary Material 15.
DOI: 10.3535/6yh-fw6-xpt
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/txm-raz-bab
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29455783
title: Additional file 16 of Single-cell transcriptomics link gene expression signatures to clinicopathological features of gonadotroph and lactotroph PitNET

description: Supplementary Material 16.
DOI: 10.3535/l6f-mjj-94w
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0rq-lf1-srz
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/py2-0k7-wl5
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29455786
title: Additional file 17 of Single-cell transcriptomics link gene expression signatures to clinicopathological features of gonadotroph and lactotroph PitNET

description: Supplementary Material 17.
DOI: 10.6084/m9.figshare.29455786.v1
title: Additional file 17 of Single-cell transcriptomics link gene expression signatures to clinicopathological features of gonadotroph and lactotroph PitNET

description: Supplementary Material 17.
DOI: 10.3535/bg5-569-8k6
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kx2-lbe-fgg
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/24g-5yy-vdw
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f7m-cag-7pa
title: Carabodes (Carabodes) marginatus (Michael, 1884)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/04k-3hn-xl9
title: Scheloribates Berlese, 1908

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dja-z2y-3ym
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fxp-dzq-12f
title: Theridion

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/njw-bxv-y8s
title: Limnesia C. L. Koch, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ykh-v3e-az5
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9sj-yc9-l6a
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gkp-rck-5nq
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29455799
title: Additional file 2 of Extensive data mining uncovers novel diversity among members of the rare biosphere within the Thermoplasmatota

description: Supplementary Material 2: Tables S1. ASV counts and relative abundances of archaeal 16S rRNA gene amplicon sequencing for control and protein amended samples. S2. Top hits of a megablast search of the Ca. Penumbrarchaeia ASV sq2 and 16S rRNA gene obtained from the Ca. Penumbrarchaeia MAG E3_1_d157 against the rRNA/ITS database of the NCBI RefSeq Targeted Loci Project. S3. Overview list of metagenomic studies, in which Ca. Penumbrarchaeia MAGs had a coverage &gt; 2. These studies were used to reconstruct Ca. Penumbrarchaeia MAGs. S4. Overview list of MAGs obtained in this studyS4. Overview list of MAGs obtained in this study. S5. Quality statistics computed with checkM and checkM2 and taxonomy information computed using gtdb_tk with the GTDB database v207S5. Quality statistics computed with checkM and checkM2 and taxonomy information computed using gtdb_tk with the GTDB database v207. S6. Table containing relative abundances of single MAGs in mapped metagenomic runs. S7. List of all unique metagenomic runs, in which Ca. Penumbrarchaeia MAGs were found with meta data derived from ENA of the sampling location and environment details. . S8. List of Orthogroups, which were selected as core genome (Orthogroup present in at least 90% of MAGs). The table shows gene counts for each MAG within single orthogroups. S9. Gene counts for single pathways within each of the Ca. Penumbrarchaeia MAGs. Genes were extracted from the core genome and annotated using NR and kegg. Based on found annotations genes were grouped into kegg pathway descriptions. S10. Full annotation of genes, which were found in all orthogroups of the core genome. Annotation was performed using kegg, NR, OM_RGC, dbCAN and merops. S11. Full annotation of selected pathways for all 35 Ca. Penumbrarchaeia MAGs. Annotation was performed using KEGG (release 104) and NR (release 13/05/2023), dbCAN (v3.0.7) and merops (v12.4). S12. Annotation of peptidases found in all 35 Ca. Penumbrarchaeia MAGs. The annotation was performed using merops (v12.4). S13. Annotation of CAZymes found in all 35 Ca. Penumbrarchaeia MAGs. The annotation was performed using dbCAN (v3.0.7). Results were validated with NR and KEGG annotations.S14. Gene counts for the categories annotated, hypothetical and unknown, along with percentages for each category. S15. Counts of rarity groups per habitat. S16.Overview table of all Thermoplasmatota MAGs with their taxonomic classification, fraction of occurrence, percentage of unknown genes (perentage_unknown), rarity and habitat. S17. Studies from selected marine metagenomics literature and matched with BioProject identifiers from the European Nucleotide Archive for MAG reconstruction in OMDv2
DOI: 10.3535/08t-ckg-rcg
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nhx-jvf-f1k
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29455799.v1
title: Additional file 2 of Extensive data mining uncovers novel diversity among members of the rare biosphere within the Thermoplasmatota

description: Supplementary Material 2: Tables S1. ASV counts and relative abundances of archaeal 16S rRNA gene amplicon sequencing for control and protein amended samples. S2. Top hits of a megablast search of the Ca. Penumbrarchaeia ASV sq2 and 16S rRNA gene obtained from the Ca. Penumbrarchaeia MAG E3_1_d157 against the rRNA/ITS database of the NCBI RefSeq Targeted Loci Project. S3. Overview list of metagenomic studies, in which Ca. Penumbrarchaeia MAGs had a coverage &gt; 2. These studies were used to reconstruct Ca. Penumbrarchaeia MAGs. S4. Overview list of MAGs obtained in this studyS4. Overview list of MAGs obtained in this study. S5. Quality statistics computed with checkM and checkM2 and taxonomy information computed using gtdb_tk with the GTDB database v207S5. Quality statistics computed with checkM and checkM2 and taxonomy information computed using gtdb_tk with the GTDB database v207. S6. Table containing relative abundances of single MAGs in mapped metagenomic runs. S7. List of all unique metagenomic runs, in which Ca. Penumbrarchaeia MAGs were found with meta data derived from ENA of the sampling location and environment details. . S8. List of Orthogroups, which were selected as core genome (Orthogroup present in at least 90% of MAGs). The table shows gene counts for each MAG within single orthogroups. S9. Gene counts for single pathways within each of the Ca. Penumbrarchaeia MAGs. Genes were extracted from the core genome and annotated using NR and kegg. Based on found annotations genes were grouped into kegg pathway descriptions. S10. Full annotation of genes, which were found in all orthogroups of the core genome. Annotation was performed using kegg, NR, OM_RGC, dbCAN and merops. S11. Full annotation of selected pathways for all 35 Ca. Penumbrarchaeia MAGs. Annotation was performed using KEGG (release 104) and NR (release 13/05/2023), dbCAN (v3.0.7) and merops (v12.4). S12. Annotation of peptidases found in all 35 Ca. Penumbrarchaeia MAGs. The annotation was performed using merops (v12.4). S13. Annotation of CAZymes found in all 35 Ca. Penumbrarchaeia MAGs. The annotation was performed using dbCAN (v3.0.7). Results were validated with NR and KEGG annotations.S14. Gene counts for the categories annotated, hypothetical and unknown, along with percentages for each category. S15. Counts of rarity groups per habitat. S16.Overview table of all Thermoplasmatota MAGs with their taxonomic classification, fraction of occurrence, percentage of unknown genes (perentage_unknown), rarity and habitat. S17. Studies from selected marine metagenomics literature and matched with BioProject identifiers from the European Nucleotide Archive for MAG reconstruction in OMDv2
DOI: 10.3535/3em-4h2-jhx
title: Clubiona

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xdk-jar-q6h
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29455804.v1
title: Additional file 3 of Rotifers in space: transcriptomic response of the bdelloid rotifer Adineta vaga aboard the International Space Station

description: Additional file 3: Tables S1-S3. Table S1 Samples sequenced and mapping statistics. The columns give the sample ID, the NCBI sample number, the GC number, the condition of the sample, its pool, the total raw reads before and after trimming, the percentage of reads after trimming, uniquely mapped, mapped to multiple or many loci and unmapped. Table S2 Genes within Adineta vaga genome. The columns give the gene ids from the gene assembly in Simion et al., the correspondence gene ids in the genome published by Simion et al., if the gene is annotated as HGT, the blast hits, the KEGG ids, GO ids, pfam domains, the results for all analyses with DESeq2 and EdgeR, and the TPM values for all the different analyzed conditions. The columns with the results from DESeq2 and EdgeR are explained in the second table sheet. Table S3 Temperature profiles of the two flights hardwareand the two ground controls hardware
DOI: 10.3535/p07-s8g-3gr
title: Lista Walker, 1859

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29455804
title: Additional file 3 of Rotifers in space: transcriptomic response of the bdelloid rotifer Adineta vaga aboard the International Space Station

description: Additional file 3: Tables S1-S3. Table S1 Samples sequenced and mapping statistics. The columns give the sample ID, the NCBI sample number, the GC number, the condition of the sample, its pool, the total raw reads before and after trimming, the percentage of reads after trimming, uniquely mapped, mapped to multiple or many loci and unmapped. Table S2 Genes within Adineta vaga genome. The columns give the gene ids from the gene assembly in Simion et al., the correspondence gene ids in the genome published by Simion et al., if the gene is annotated as HGT, the blast hits, the KEGG ids, GO ids, pfam domains, the results for all analyses with DESeq2 and EdgeR, and the TPM values for all the different analyzed conditions. The columns with the results from DESeq2 and EdgeR are explained in the second table sheet. Table S3 Temperature profiles of the two flights hardwareand the two ground controls hardware
DOI: 10.3535/m95-3j8-zwy
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sde-53x-cz9
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0x2-ntj-0hh
title: Rhopalanoetus fimetarius (Canestrini & Berlese, 1881)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qe9-q44-lcl
title: Bdella

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9ek-qbq-mjn
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y8s-d0r-ha1
title: Rhopalanoetus fimetarius (Canestrini & Berlese, 1881)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29455817
title: Additional file 1 of Genetic analysis of the single internode dwarf 1 mutant in barley

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.29455817.v1
title: Additional file 1 of Genetic analysis of the single internode dwarf 1 mutant in barley

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.29455820
title: Additional file 2 of Genetic analysis of the single internode dwarf 1 mutant in barley

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.29455820.v1
title: Additional file 2 of Genetic analysis of the single internode dwarf 1 mutant in barley

description: Supplementary Material 2.
DOI: 10.3535/68a-932-dq4
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ecn-9pp-p19
title: Bonzia halacaroides Oudemans, 1927

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s1z-btb-scd
title: Halacaridae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/klb-ql5-rhd
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l0f-qe1-nfm
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9ga-4jv-l41
title: Adoristes (Adoristes) ovatus (Koch, 1839)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r3p-zfb-xf7
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/94d-kf2-kjk
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rk2-pw0-g5l
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fdk-6p4-psz
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nkw-z83-zh6
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wdw-6rk-jj6
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dzv-leg-mem
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f2p-q6g-j5h
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w1v-49g-d7h
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y6b-24g-8xs
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29455856
title: Additional file 4 of Parents’ experiences of family-based physical activity interventions: a systematic review and qualitative evidence synthesis

description: Supplementary Material 4. Individual study characteristics.
DOI: 10.6084/m9.figshare.29455856.v1
title: Additional file 4 of Parents’ experiences of family-based physical activity interventions: a systematic review and qualitative evidence synthesis

description: Supplementary Material 4. Individual study characteristics.
DOI: 10.6084/m9.figshare.29455859.v1
title: Additional file 5 of Parents’ experiences of family-based physical activity interventions: a systematic review and qualitative evidence synthesis

description: Supplementary Material 5. CASP checklist.
DOI: 10.3535/41c-p6a-6g7
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29455859
title: Additional file 5 of Parents’ experiences of family-based physical activity interventions: a systematic review and qualitative evidence synthesis

description: Supplementary Material 5. CASP checklist.
DOI: 10.6084/m9.figshare.29455864
title: Additional file 2 of Genomic and functional insights into commensal streptococci with anti-pneumococcal activity

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.29455864.v1
title: Additional file 2 of Genomic and functional insights into commensal streptococci with anti-pneumococcal activity

description: Supplementary Material 2
DOI: 10.3535/7h9-btm-sxs
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mh9-ltk-4ep
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/flg-b1d-v8g
title: Rhopalanoetus fimetarius (Canestrini & Berlese, 1881)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k9f-e9r-h7y
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gzq-gvc-pvg
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.