cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5011937.v1
title: Supplementary Material for: Theorie-Praxis-Netzwerke in verhaltenstherapeutischer Ausbildung: Schulung, Selbsterfahrung und Einsatz in der Therapie am Beispiel von Achtsamkeit

description: Hintergrund: Die Bausteine der theoretischen und praktischen verhaltenstherapeutischen Ausbildung finden selten direkt aufeinander bezogen statt. Die stärkere Vernetzung von Schulung, Übungsintervall und Einsatz in der Therapie von relevanten therapeutischen Interventionen ist wünschenswert. Am Beispiel einer Untersuchung von Achtsamkeitsinterventionen wurde im vorliegenden Manuskript der Versuch unternommen, dieses Thema zu adressieren. Methodik: 27 Ausbildungstherapeuten führten Achtsamkeits-Workshops mit Selbsterfahrungsintervallen durch. Darauf aufbauend wurden bei 36 Patienten standardisierte sitzungseinleitende Übungen mit Achtsamkeitselementen direkt in die Ausbildungstherapien integriert. Das Programm wurde auf Akzeptanz, Durchführbarkeit und Effektivität überprüft. Die Symptomreduktion (Beck Depression Inventory (BDI-II), Brief Symptom Inventory (BSI)) von Probatorik zur 15. Therapiesitzung wurde varianzanalytisch mit Patienten der Routineversorgung als Kontrollgruppe verglichen. Ergebnisse: In qualitativen Interviews zeigten sich positive Achtsamkeitserfahrungen. Generell waren Akzeptanz und Durchführbarkeit des Theorie-Praxis-Netzwerks hoch. Laut Aussagen der Ausbildungstherapeuten wurden hier sinnvolle Schnittstellen zwischen theoretischer und praktischer Ausbildung realisiert. Bezüglich der Symptomreduktion zeigten sich für Patienten der Achtsamkeitsgruppe und Routineversorgung ähnliche Effektstärken, hier bestanden keine signifikanten Unterschiede. Schlussfolgerung: Die Kombination aus Achtsamkeits-Work-shops und darauf aufbauenden sitzungseinleitenden Übungen wurde als sinnvoll erlebt, zeigte allerdings keine stärkeren klinischen Effekte als die Routineversorgung. Zukünftige Forschung sollte Theorie-Praxis-Netzwerke in anderen Bereichen (z.B. Progressive Muskelrelaxation, Compassion) untersuchen. Zusätzlich zu positiven Durchführbarkeits- und Akzeptanzbefunden könnten dort auch klinisch relevante Effekte identifizierbar sein.
DOI: 10.6084/m9.figshare.7801331.v4
title: Code for studying the relationship between Population abundance and Niche-Centroid Distance

description: Code to reproduce whole the analysis from the project "Predictive Relationships Between Population Densities and Niche-centroid Distances in North American Birds" using Rmarkdown.
DOI: 10.6084/m9.figshare.5786484.v1
title: Timelapse 5a - raw confocal files

description: See accompanying word documents<br><br>
DOI: 10.6084/m9.figshare.14261372.v1
title: Radiocarbon dates from Central Yakutia, v.1.0

description: Quaternary history nof Central Yakutia, including permafrost history, is still a major challenge for the researchers in the region. The origin and development of ice-rich permafrost, referenced as 'Ice Complex', is debated. Further discussion is fuelled by the evident reaction of this extremely particular cryoarid environment of Central Yakutia to the ongoing and forecasted climate change.<br>This dataset compiles 254 <sup>14</sup>C dates from Central Yakutia. Significant part of the collection was published in 1970s and 1980s by the researchers of Melnikov Permafrost Institute SB RAS. Multiple dates (n = 25) are compiled for the extensively studied Mamontova Gora outcrop on the Aldan R., and the Khara-Bulgunnyakh alas site, where repeated surveys were performed in 2010s after major studies in the 1980s.
DOI: 10.6084/m9.figshare.16803229.v1
title: Disentangling climatic and nest predator impact on reproductive output reveals adverse high temperature effects regardless of helper number in an arid-region cooperative bird

description: Datasets and scripts for the article:Disentangling climatic and nest predator impact on reproductive output reveals adverse high temperature effects regardless of helper number in an arid-region cooperative bird.<br>by:D’Amelio B. Pietro1,2, Ferreira C. André2,3, Fortuna Rita3, Paquet Matthieu4, Silva R. Liliana3, Franck Theron2,3, Doutrelant Claire1,2, Covas Rita1,3 1 FitzPatrick Institute of African Ornithology, DSI-NRF Centre of Excellence, University of Cape Town, Rondebosch 7701, South Africa2 Centre d’Ecologie Fonctionnelle et Evolutive, CNRS, Univ. Montpellier, EPHE, IRD, Montpellier, France3 CIBIO-InBio, Research Centre in Biodiversity and Genetic Resources, Campus Agrário de Vairão, Vairão, Portugal4 Department of Ecology, Swedish University of Agricultural Sciences, Box 7044, SE-75007 Uppsala, Sweden<br><br>Precise description is in the readme file<br>
DOI: 10.6084/m9.figshare.22568095.v1
title: Supplementary Material for: Identification of a novel NRG1 fusion with targeted therapeutic implications in locally advanced pediatric cholangiocarcinoma: A case report

description: Locally advanced cholangiocarcinoma has a poor prognosis, with long-term survival only for patients where complete surgical resection is achieved. Median overall survival with chemotherapy alone is less than one year. Novel strategies combining conventional chemotherapy and radiotherapy followed by targeted agents can lead to durable treatment responses and are applicable to cholangiocarcinoma management. Pediatric cholangiocarcinoma is exceedingly rare, with an estimated 15-22 cases reported in the last 40 years. As such, no standard therapeutic regimen exists. We present a case of a 17-year-old previously healthy patient with unresectable cholangiocarcinoma whose tumor genetic sequencing revealed a novel, actionable NRG1 (neuregulin 1) gene translocation. The patient underwent standard systemic chemotherapy with gemcitabine and cisplatin followed by hypofractionated proton radiation therapy for local control. The patient then started an oral pan-ERBB (erythroblastic B receptor tyrosine kinases including ErbB1/EGFR, ErbB2/HER2, ErbB3/HER3, ErbB4/HER4) family inhibitor as a maintenance medication, remaining with stable disease and excellent quality of life for over two years. This case highlights a novel NRG1 fusion in a rare clinical entity that provided an opportunity to utilize a multimodal therapeutic strategy in the pediatric setting.
DOI: 10.6084/m9.figshare.28130132.v2
title: The raw data used in machine learning

description: This project contains the raw data for constructing the RX model.
DOI: 10.17632/vtpnkd77c4
title: Data for: Global rates of pyrite formation in the subsurface hydrogen sulfide zone of marine sediments

description: Compiled pore-water data from a total of 161 sediment cores and solid-phase data of a few sediment core.
DOI: 10.6084/m9.figshare.4028670.v5
title: Processed expression data of 40 tissues for RNAseq mouse PRJNA30467

description: A tab-separated values (TSV) file for RefEx_expression_RNAseq40_mouse_PRJNA30467<br>A value of "-1" means not applicable (N/A).<br>
DOI: 10.6084/m9.figshare.7849391.v1
title: abc.tar.gz

description: This is a small .tar.gz file for testing downloads and extractions from figshare.<br>
DOI: 10.6084/m9.figshare.26356846.v1
title: <b>Climate underlies variation in plant disease severity by altering grassland plant communities</b>

description: Data for “<b>Climate underlies variation in plant disease severity by altering grassland plant communities</b>”
DOI: 10.6084/m9.figshare.3562326.v1
title: Appendix A. Location of the study sites.

description: Location of the study sites.
DOI: 10.6084/m9.figshare.8852084.v2
title: 10 Years Bug-Fix Dataset (PROMISE'19)

description: Replication Package of the paper "From Reports to Bug-Fix Commits: A 10 Years Dataset of Bug-Fixing Activity from 55 Apache's Open Source Projects"<br><br>ABSTRACT:<br>Bugs appear in almost any software development. Solving all or at least a large part of them requires a great deal of time, effort, and budget. Software projects typically use issue tracking systems as a way to report and monitor bug-fixing tasks. In recent years, several researchers have been conducting bug tracking analysis to better understand the problem and thus provide means to reduce costs and improve the efficiency of the bug-fixing task. In this paper, we introduce a new dataset composed of more than 70,000 bug-fix reports from 10 years of bug-fixing activity of 55 projects from the Apache Software Foundation, distributed in 9 categories. We have mined this information from Jira issue track system concerning two different perspectives of reports with closed/resolved status: static (the latest version of reports) and dynamic (the changes that have occurred in reports over time). We also extract information from the commits (if they exist) that fix such bugs from their respective version-control system (Git).We also provide a change analysis that occurs in the reports as a way of illustrating and characterizing the proposed dataset. Once the data extraction process is an error-prone nontrivial task, we believe such initiatives like this could be useful to support researchers in further more detailed investigations.<br><br>You can find the full paper at: https://doi.org/10.1145/3345629.3345639<br>If you use this dataset for your research, please reference the following paper:<pre>@inproceedings{Vieira:2019:RBC:3345629.3345639, author = {Vieira, Renan and da Silva, Ant\^{o}nio and Rocha, Lincoln and Gomes, Jo\~{a}o Paulo}, title = {From Reports to Bug-Fix Commits: A 10 Years Dataset of Bug-Fixing Activity from 55 Apache's Open Source Projects}, booktitle = {Proceedings of the Fifteenth International Conference on Predictive Models and Data Analytics in Software Engineering}, series = {PROMISE'19}, year = {2019}, isbn = {978-1-4503-7233-6}, location = {Recife, Brazil}, pages = {80--89}, numpages = {10}, url = {http://doi.acm.org/10.1145/3345629.3345639}, doi = {10.1145/3345629.3345639}, acmid = {3345639}, publisher = {ACM}, address = {New York, NY, USA}, keywords = {Bug-Fix Dataset, Mining Software Repositories, Software Traceability}, } </pre>
DOI: 10.6084/m9.figshare.8858129.v1
title: Supplementary Material for: <b><i>Trichophyton violaceum</i></b>: An Emerging Pathogen in Southern Switzerland

description: <b><i>Background:</i></b> <i>Trichophyton violaceum</i>is an anthropophilic dermatophyte, endemic in Africa and recently an emerging pathogen in Europe. <b><i>Objective:</i></b> To perform a retrospective analysis of dermatophytoses due to <i>T. violaceum</i> between 2007 and 2018, in order to evaluate epidemiological trends in Southern Switzerland (Ticino). <b><i>Methods:</i></b> We reviewed all medical records of patients affected by dermatophytosis due to <i>T. violaceum</i> between January 2007 and December 2018 in Bellinzona (Ticino, Switzerland). <b><i>Results:</i></b> Dermatophytoses due to <i>T. violaceum</i>was diagnosed in 44 patients, 33 of which were in the last 4 years. The most affected sex was female (25/44) and the most frequent diagnosis was tinea capitis (30/44). The majority of tinea capitis patients were children younger than 13 years of age (27/30). The main source of contagion were people from endemic areas, especially from Eritrea. <b><i>Conclusion:</i></b> In Southern Switzerland <i>T. violaceum</i>has been rarely diagnosed before 2014. Its increased occurrence seems linked to increased migratory flows from Eritrea. Since it is responsible mainly for tinea capitis, with most of the time no clearly defined alopecia patches, it is important to consider it as a possible diagnosis when facing scalp scaling. Tinea capitis due to<i> T. violaceum</i> is a benign affection, but if left untreated it can spread epidemically, especially among children in schools and kindergartens. Mycological examination is then required, not only for a correct diagnosis and epidemiological data, but also for planning the appropriate treatment.
DOI: 10.6084/m9.figshare.28723658.v1
title: Shell Games: Business Entity Structuring and Litigation Patterns (2012–2024)

description: This report examines publicly available civil court records involving an individual linked to multiple business entities, with a focus on entity formation, litigation patterns, and judgment enforcement. Drawing from civil complaints filed across multiple jurisdictions—primarily Delaware and Nevada—between 2012 and 2024, this study identifies patterns of strategic incorporation, dissolution following litigation, and unsatisfied judgments. The report is intended for institutional review, academic research, and public interest due diligence. This report complements a prior behavioral analysis titled “Romantic Trust in Business Solicitation: Civil Litigation Profile of Zacharia Ali (2012–2024).
DOI: 10.6084/m9.figshare.21435252.v2
title: walking speed dataset

description: We take some videos by UAV to extract walking speed at street scale, after conversion, we get three datasets, called "street", "flight speed" and "altitude". Here are complete dataset and computer code.
DOI: 10.6084/m9.figshare.4056246.v1
title: SDF file containing EPA Comptox Chemistry Dashboard Structures and Mappings to PubChem

description: The foundation of chemical safety testing relies on chemistry information such as high-quality chemical structures and physical chemical properties. This information is used by scientists to predict the potential health risks of chemicals.<br>The iCSS CompTox Chemistry Dashboard is part of a suite of dashboards developed by EPA to help evaluate the safety of chemicals. The dashboard provides access to a variety of information on over 700,000 chemicals currently in use.<br> Within the dashboard, users can access chemical structures, experimental and predicted physicochemical and toxicity data, and additional links to relevant websites and applications. It maps curated physicochemical property data associated with chemical substances to their corresponding chemical structures.<br>This data are compiled from sources including the EPA’s computational toxicology research databases, and public domain databases such as the National Center for Biotechnology Information’s PubChem database. <br>This dataset is an SDF file containing all of the chemical structures in the dashboard and mappings between the DTXSIDs and the associated PubChem IDs<br>This file is the version produced by an export of the database on July 25th 2016
DOI: 10.6084/m9.figshare.19160915.v1
title: EMG of stroke patients

description: The data file includes the raw EMG signals of 20 stroke patients when performing hand-to-nose movement. Ten muscle activities are measured, triceps brachii long and lateral head (TLO and TLA), latissimus dorsi (LAT), pectoralis major (PEC), deltoid anterior, medial, and posterior (DEA, DEM, and DEP), trapezius upper (TRA), biceps brachii (BIC), and brachioradialis (BRA). And each subject continuously repeated the movement three times.
DOI: 10.6084/m9.figshare.22586110.v1
title: Supplementary Material for: TLR7 activation in M-CSF-dependent monocyte-derived human macrophages potentiates inflammatory responses and prompts neutrophil recruitment

description: Toll-like receptor 7 (TLR7) is an endosomal Pathogen-Associated Molecular Pattern (PAMP) receptor that senses single-stranded RNA (ssRNA) and whose engagement results in the production of type I IFN and pro-inflammatory cytokines upon viral exposure. Recent genetic studies have established that a dysfunctional TLR7-initiated signaling is directly linked to the development of inflammatory responses. We present evidences that TLR7 is preferentially expressed by monocyte-derived macrophages generated in the presence of M-CSF (M-MØ). We now show that TLR7 activation in M-MØ triggers a weak MAPK, NFκB and STAT1 activation and results in low production of type I IFN. Of note, TLR7 engagement re-programs MAFB+ M-MØ towards a pro-inflammatory transcriptional profile characterized by the expression of neutrophil-attracting chemokines (CXCL1-3, CXCL5, CXCL8), whose expression is dependent on the transcription factors MAFB and AhR. Moreover, TLR7-activated M-MØ display enhanced pro-inflammatory responses and a stronger production of neutrophil-attracting chemokines upon secondary stimulation. As aberrant TLR7 signaling and enhanced pulmonary neutrophil/lymphocyte ratio associate with impaired resolution of virus-induced inflammatory responses, these results suggest that targeting macrophage TLR7 might be a therapeutic strategy for viral infections where monocyte-derived macrophages exhibit a pathogenic role.
DOI: 10.17028/rd.lboro.28284701.v1
title: Supplementary information files for "Modeling and optimization of renewable hydrogen systems: A systematic methodological review and machine learning and integration"

description: Supplementary files for article "Modeling and optimization of renewable hydrogen systems: A systematic methodological review and machine learning integration"The renewable hydrogen economy is recognized as an integral solution for decarbonizing energy sectors. However, high costs have hindered widespread deployment. One promising way of reducing the costs is optimization. Optimization generally involves finding the configuration of the renewable generation and hydrogen system components that maximizes return on investment. Previous studies have included many aspects into their optimisations, including technical parameters and different costs/socio-economic objective functions, however there is no clear best-practice framework for model development. To address these gaps, this critical review examines the latest development in renewable hydrogen microgrid models and summarises the best modeling practice. The findings show that advances in machine learning integration are improving solar electricity generation forecasting, hydrogen system simulations, and load profile development, particularly in data-scarce regions. Additionally, it is important to account for electrolyzer and fuel cell dynamics, rather than utilizing fixed performance values. This review also demonstrates that typical meteorological year datasets are better for modeling solar irradiation than first-principle calculations. The practicability of socio-economic objective functions is also assessed, proposing that the more comprehensive Levelized Value Addition (LVA) is best suited for inclusion into models. Best practices for creating load profiles in regions like the Global South are discussed, along with an evaluation of AI-based and traditional optimization methods and software tools. Finally, a new evidence-based multi-criteria decision-making framework Revised Manuscript with no changes marked Click here to view linked References integrated with machine learning insights, is proposed to guide decision-makers in selecting optimal solutions based on multiple attributes, offering a more comprehensive and adaptive approach to renewable hydrogen system optimization.© The Authors, CC BY 4.0
DOI: 10.6084/m9.figshare.17877194.v3
title: Data of Comparative study on real-time pose estimation of vision-based unmanned underwater vehicles

description: Data of Comparative study on real-time pose estimation of vision-based unmanned underwater vehicles
DOI: 10.6084/m9.figshare.27811866.v1
title: Data for "Important role of Fe oxides in global soil carbon stabilization and stocks"

description: Data for "Important role of Fe oxides in global soil carbon stabilization and stocks"
DOI: 10.6084/m9.figshare.27092692.v1
title: Impact of wintertime total column ozone on snow cover over the Tibetan Plateau

description: the data is the ozone forcing data used in the WACCM4 numerical simulations
DOI: 10.6084/m9.figshare.27261714.v1
title: Supplementary Material for: A High-Intensity versus Moderate-Intensity exercise training program in Alpha-1 antitrypsin deficiency-related COPD (IMAC): a randomized, controlled trial.

description: Introduction: Training-induced adaptations of the oxidative capacity have been shown to be blunted in alpha-1 antitrypsin deficiency (AATD)-related chronic obstructive pulmonary disease (COPD). To improve training outcomes in AATD, this study was aimed to compare the effects of two exercise training programs with different training intensities. 
Methods: 30 patients with AATD (genotype PiZZ) and COPD III-IV were randomly assigned either to high-intensity (HIT) or moderate-intensity training (MIT), each consisting of endurance, strength and a squat training for a duration of 3 weeks. 6-minute walk distance (6MWD) was used as the primary outcome. 
Results: 25 subjects augmented with alpha-1 antitrypsin (HIT: n=12, FEV1 41.3±17.4%pred., MIT: n=13, FEV1 45.9±15.5%pred.) completed the study. In HIT and MIT, 6MWD (+37±43m vs. +32±28m, p=0.741), 1-minute sit-to-stand test (5.6±4.9 repetitions vs. 5.6±4.5 repetitions, p=0.766), exercise-induced BORG dyspnoea (-1.4±1.7pts vs. -1.5±2.4pts, p=0.952) and all CRQ domains have improved after training without between-group differences. When considering only subgroups of (probably) anxious or depressive patients (Hospital Anxiety and Depression Scale [HADS] ≥ 8 pts), only HIT induced a significant reduction of anxiety (-4.8 pts, 95% CI [2.1 to 7.5]) or depression symptoms (-5.0 pts, 95% CI [2.8 to 7.3]).

Conclusion: Although HIT and MIT were equally effective by improving exercise capacity, quality of life and dyspnoea in homozygous AATD, HIT may show advantages over MIT, if anxiety or depression symptoms were present. The goal should be personalized training based on the patient's personal preference in order to achieve long-term adherence.
DOI: 10.17632/bfw64bhbwj
title: Data for: Anatomy of a Late Triassic Bristol fissure: Tytherington fissure 2

description: Catalogue and tallies of microvertebrate fossils retrieved from the various samples from Tytherington fissure 2.
DOI: 10.6084/m9.figshare.22721827.v1
title: Apical bleeding: a rare cause of blindness after orbital decompression

description: ABSTRACT Orbital decompression is widely performed for the management of proptosis for cosmetic and functional cases of Graves orbitopathy. The main side effects include dry eye, diplopia, and numbness. Blindness after orbital decompression is extremely rare. The mechanisms of vision loss after decompression are not well described in the literature. Considering the devastating effect and rarity of this complication, this study presented two cases of blindness after orbital decompression. In both cases, vision loss was provoked by slight bleeding in the orbital apex.
DOI: 10.6084/m9.figshare.3581235.v1
title: Code and data for "A rigorous statistical framework for estimating the long-term health impact of air pollution"

description: This folder contains code and data necessary to fit the models documented in Section 4 of the paper "A rigorous statistical framework for estimating the long-term health impact of air pollution".<br><br>The code is a mixture of C and R and is run from the file MAIN.R where more specific instructions can be found.<br>
DOI: 10.17632/rnkkhwr2ch
title: SPunaDataset

description: This dataset was used in Delph et al 2021 (JGR), but proper acknowledgements should be given to the authors of the original data compilation: Geochemical data: see references in excel file Shear-wave velocity volume (JOINT_Vs_200_50_100.txt): Delph et al. 2017, EPSL P-wave attenuation volume (SPuna_Qp_model.txt): Liang et al. 2014, JGR
DOI: 10.17632/wb6hncs2b7
title: Bacteria MAGs from ATWR

description: Bacteria metagenome-assembled genomes reconstructed from groundwater samples of Aquifer below Tang-he Wastewater Reservoir.