cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13553359
title: Accelerated senescence and nitrogen remobilization in flag leaves enhance nitrogen use efficiency in soft red winter wheat

description: Wheat (<i>Triticum aestivum</i> L.) production requires a large amount of nitrogen (N) supply because growers aim to achieve high grain yield and appropriate grain protein content simultaneously. A comprehensive understanding of the mechanisms that underpin efficient N usage at limited N in wheat can facilitate the development of new N-saving varieties in this major crop. Here, we performed comparative analysis of flag leaf responses to N availability in soft red winter wheat with contrasting N use efficiency (NUE); VA08MAS-369 (high NUE) and VA07W-415 (low NUE). This study demonstrated that accelerated senescence along with enhanced breakdown of protein and starch in flag leaves was correlated with higher grain yield, NUE for grain yield, and NUE for grain protein under N limitation. The more dramatic reductions in flag leaf N compounds and carbohydrate reserves in VA08MAS-369 were linked with significantly elevated expression of genes and enzymes associated with these metabolic pathways in this high NUE genotype. Consistent with the gene expression data, nitrate reductase, glutamine synthetase, and NAD-dependent glutamate dehydrogenase activities were highly induced under limited N in VA08MAS-369. It was previously reported that accelerated senescence contributes to increased grain protein content in wheat under regular N supply. This study provides molecular and physiological evidence that vigorous senescence and N remobilization also benefit grain yield under N deprivation.
DOI: 10.6084/m9.figshare.13685787.v1
title: Evaluation of APSIM-Wheat to simulate the response of yield and grain protein content to nitrogen application on an Andosol in Japan

description: The self-sufficiency ratio and national average yield of wheat is low in Japan. Reducing the yield gap and receiving the government subsidy for grain quality are vital strategies for profitability. Elucidating optimum nitrogen application scheme is awaited to attain both higher yield and appropriate grain protein content (GPC) for wheat cultivation in Japan. Such decision support can be realized by integrating field experimental knowledge to crop growth models, although they have scarcely been utilized for wheat production in Japan. Therefore, the purposes of this study were to apply a widely used crop growth model (APSIM) to wheat growth on an Andosol in Kanto region in Japan by calibration and validation. Selected model parameters of APSIM-wheat for phenology, leaf growth, and grain formation were readjusted based on the phenology and growth data of soft and hard wheat cultivars. Then the model was validated by using similar variables obtained in an independent experiment. For the simulation of the optimum sowing for winter wheat in Kanto area (November), the root mean square error (RMSE) for grain yield was 23 and 48 g m<sup>−2</sup> for Ayahikari and Yumeshiho varieties, respectively, and that for GPC was 1.9 and 1.4 %. Thus the overall model performance was acceptable for optimum sowing. However, grain yield and dry matter production were significantly overestimated when the data of late sowing groups were included. Therefore further model improvement was suggested to add an algorithm to reduce the number of emerged plants under cold temperature in late sowing conditions.
DOI: 10.17632/nxbr95tzn2.1
title: Dataset for "The application of protein membranes as cell co-cultivation systems in modeling the intercellularcommunication."

description: Dataset for article "The application of protein membranes as cell co-cultivation systems in modeling the intercellular communication." Include raw rtPCR data and images.
DOI: 10.5281/zenodo.5708255
title: Remote learning and students' mental health during the Covid‑19 pandemic: Dataset and questionnaire

description: Questionnarie and dataset for the article "Remote learning and students' mental health during the Covid‑19 pandemic: A mixed method enquiry", published in "Prospects" (2021, https://doi.org/10.1007/s11125-020-09530-w)
DOI: 10.5281/zenodo.5708254
title: Remote learning and students' mental health during the Covid‑19 pandemic: Dataset and questionnaire

description: Questionnarie and dataset for the article "Remote learning and students' mental health during the Covid‑19 pandemic: A mixed method enquiry", published in "Prospects" (2021, https://doi.org/10.1007/s11125-020-09530-w)
DOI: 10.5281/zenodo.5707910
title: Data release: Understanding binary neutron star collisions with hypermodels

description: <pre># Data release for "Understanding binary neutron star collisions with hypermodels" ## Summary For each event, we include sub-directories of the studies performed. In each directory, we provide the `bilby_pipe` configuration (`.ini`) files, `bilby` result file (`.json`). We also provide figures, samples (in the form of `.csv` files), and summary statistics where they are relevant. ## Hypermodel script All results obtained using the *hypermodel* technique use the script `multiwaveform.py`. We include this script at the top-level of this directory. To reproduce results, in each configuration file, replace the `analysis-executable` with the path to this script. ## Software versions All results obtained using * bilby_pipe=1.0.3: (CLEAN) 1220709 2021-05-14 06:28:48 -0700 * bilby=1.1.2: (CLEAN) e5481028 2021-07-05 16:45:01 +0100</pre>
DOI: 10.5281/zenodo.5708172
title: HTW Berlin weather data with a temporal resolution of 1 Hz and 1/60Hz (2017-2020)

description: These data sets from 2017-2020 contain the weather data measured on the roof at the University of Applied Sciences for Engineering and Economics in Berlin (HTW Berlin). <br> The data sets have a resolution of 1 Hz and 1/60 Hz and are stored in a Matlab .mat file.<br> <br> The data sets contain the solar irradiance, wind speed (x,y,z), air pressure, air temperature and humidity.<br> The documentation has more detailed information about the equipment used and the data collected. The homepage of our research group: https://pvspeicher.htw-berlin.de/
DOI: 10.5281/zenodo.5708247
title: Sciades proops SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5708246
title: Sciades proops SPAdes preassembly

description: .
DOI: 10.6073/pasta/e810536419fc8194447df36aac021a3f
title: Hourly weather data from the Arctic LTER Wet Sedge Inlet Experimental plots from 1994 to present, Toolik Field Station, North Slope, Alaska.

description: Hourly weather data from the Arctic Tundra LTER wet sedge experimental site at Toolik Lake. The following parameters are measured every minute and averaged every hour: control plot air temperature and relative humidity at 3 meters and greenhouse plot air temperature and relative humidity at 1 meters (inside the greenhouse).
DOI: 10.6084/m9.figshare.13614942.v1
title: Comparison of short- and long-term effectiveness of ixekizumab and secukinumab in real-world practice

description: <b>Background</b>: Although secukinumab and ixekizumab both act by inhibiting IL-17A, some scientific evidence suggests that there are differences in efficacy between the two agents. <b>Objective</b>: The aim of this study was to compare the short- and long-term effectiveness of ixekizumab and secukinumab in clinical practice. <b>Methods</b>: A retrospective study was conducted on a cohort of 245 psoriatic patients receiving secukinumab or ixekizumab during the period from September 2016 to December 2019. The proportion of patients achieving PASI75, PASI90, and PASI100 at weeks 12 and 24 was calculated. We recorded the 12- and 24-month drug survival as a measure to assess long-term effectiveness. <b>Results</b>: A higher proportion of patients in the secukinumab group achieved PASI75, 90, and 100 at 12 weeks. The Kaplan-Meier survival curve for any reason of discontinuation showed no differences between the two groups. Instead, the multivariate analysis for ineffectiveness, adjusted for potential confounders, showed a lower drug survival rate in the secukinumab group, with an adjusted HR of 2.57 (95% CI 1.05–6.28, p 0.038). <b>Conclusion</b>: This real-life study demonstrated that ixekizumab and secukinumab are both highly effective in short- and long-term treatment of psoriasis, even though few differences exist concerning speed of action and long-term effectiveness.
DOI: 10.6084/m9.figshare.13614942
title: Comparison of short- and long-term effectiveness of ixekizumab and secukinumab in real-world practice

description: <b>Background</b>: Although secukinumab and ixekizumab both act by inhibiting IL-17A, some scientific evidence suggests that there are differences in efficacy between the two agents. <b>Objective</b>: The aim of this study was to compare the short- and long-term effectiveness of ixekizumab and secukinumab in clinical practice. <b>Methods</b>: A retrospective study was conducted on a cohort of 245 psoriatic patients receiving secukinumab or ixekizumab during the period from September 2016 to December 2019. The proportion of patients achieving PASI75, PASI90, and PASI100 at weeks 12 and 24 was calculated. We recorded the 12- and 24-month drug survival as a measure to assess long-term effectiveness. <b>Results</b>: A higher proportion of patients in the secukinumab group achieved PASI75, 90, and 100 at 12 weeks. The Kaplan-Meier survival curve for any reason of discontinuation showed no differences between the two groups. Instead, the multivariate analysis for ineffectiveness, adjusted for potential confounders, showed a lower drug survival rate in the secukinumab group, with an adjusted HR of 2.57 (95% CI 1.05–6.28, p 0.038). <b>Conclusion</b>: This real-life study demonstrated that ixekizumab and secukinumab are both highly effective in short- and long-term treatment of psoriasis, even though few differences exist concerning speed of action and long-term effectiveness.
DOI: 10.6084/m9.figshare.17033153.v1
title: f-MAGE native ribosome quantification

description: Quantification of f-MAGE editing of native ribosomes in E. coli
DOI: 10.6084/m9.figshare.17033153
title: f-MAGE native ribosome quantification

description: Quantification of f-MAGE editing of native ribosomes in E. coli
DOI: 10.6084/m9.figshare.17033135
title: f-MAGE oRiboT quantification

description: Quantification of f-MAGE oRiboT ribosomes
DOI: 10.6084/m9.figshare.17033135.v1
title: f-MAGE oRiboT quantification

description: Quantification of f-MAGE oRiboT ribosomes
DOI: 10.6084/m9.figshare.17033099
title: NGS quantification of f-CRISPR

description: Quantification of f-CRISPR editing of WT and oRiboT ribosomes in E. coli
DOI: 10.6084/m9.figshare.17033099.v1
title: NGS quantification of f-CRISPR

description: Quantification of f-CRISPR editing of WT and oRiboT ribosomes in E. coli
DOI: 10.15468/ae6u7z
title: Description of three new species of Gomphomastacinae (Orthoptera Eumastacoidea) from the east of Qinghai-Tibet plateau, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ge, Jun-Jie, Agrippine, Yetchom Fondjo Jeanne, Xu, Sheng-Quan, Huang, Huateng (2021): Description of three new species of Gomphomastacinae (Orthoptera Eumastacoidea) from the east of Qinghai-Tibet plateau, China. Zootaxa 5068 (3): 419-427, DOI: https://doi.org/10.11646/zootaxa.5068.3.6
DOI: 10.34892/jh4m-0h26
title: Mountains of the World (2000)

description: To produce this map, topographical data from the GTOPO30 global digital elevation model (USGS EROS Data Center 1996) were used to generate slope and local (5km radius) elevation range on a 30 arc-second grid of the world. These parameters were combined with elevation to arrive at the empirically derived definitions of the six mountain classes displayed on this map. (A spatial filter was applied to classify isolated individual 'non-mountain' grid cells in mountain areas according to the predominant class of their immediate neighbours.) The global mountain area thus defined totals 35.8 million km2, or 24% of the Earth's land surface.
DOI: 10.5517/ccdc.csd.cc27fh9h
title: CCDC 2068546: Experimental Crystal Structure Determination

description: Related Article: Joseph A. Zurakowski, Brady J. H. Austen, Maeve C. Dufour, Moulika Bhattacharyya, Denis M. Spasyuk, Marcus W. Drover|2021|Dalton Trans.|50|12440|doi:10.1039/D1DT02331D
DOI: 10.5517/ccdc.csd.cc27j4jg
title: CCDC 2071095: Experimental Crystal Structure Determination

description: Related Article: Hui Kong, Baijie Xu, Jing Zhen, Siyu Liu, Keli Li, Pengtao Ma, Jingping Wang, Jingyang Niu|2021|Inorg.Chem.|60|14872|doi:10.1021/acs.inorgchem.1c02235
DOI: 10.5517/ccdc.csd.cc27mgp1
title: CCDC 2074293: Experimental Crystal Structure Determination

description: Related Article: Yunnan Xu, Delong Liu, Yu Deng, Yi Zhou, Wanbin Zhang|2021|Angew.Chem.,Int.Ed.|60|23602|doi:10.1002/anie.202110286
DOI: 10.5517/ccdc.csd.cc27mgq2
title: CCDC 2074294: Experimental Crystal Structure Determination

description: Related Article: Yunnan Xu, Delong Liu, Yu Deng, Yi Zhou, Wanbin Zhang|2021|Angew.Chem.,Int.Ed.|60|23602|doi:10.1002/anie.202110286
DOI: 10.5517/ccdc.csd.cc27mgr3
title: CCDC 2074295: Experimental Crystal Structure Determination

description: Related Article: Yunnan Xu, Delong Liu, Yu Deng, Yi Zhou, Wanbin Zhang|2021|Angew.Chem.,Int.Ed.|60|23602|doi:10.1002/anie.202110286
DOI: 10.5517/ccdc.csd.cc27mgs4
title: CCDC 2074296: Experimental Crystal Structure Determination

description: Related Article: Yunnan Xu, Delong Liu, Yu Deng, Yi Zhou, Wanbin Zhang|2021|Angew.Chem.,Int.Ed.|60|23602|doi:10.1002/anie.202110286
DOI: 10.5517/ccdc.csd.cc27mgt5
title: CCDC 2074297: Experimental Crystal Structure Determination

description: Related Article: Yunnan Xu, Delong Liu, Yu Deng, Yi Zhou, Wanbin Zhang|2021|Angew.Chem.,Int.Ed.|60|23602|doi:10.1002/anie.202110286
DOI: 10.5517/ccdc.csd.cc27mhlz
title: CCDC 2074321: Experimental Crystal Structure Determination

description: Related Article: Yunnan Xu, Delong Liu, Yu Deng, Yi Zhou, Wanbin Zhang|2021|Angew.Chem.,Int.Ed.|60|23602|doi:10.1002/anie.202110286
DOI: 10.5517/ccdc.csd.cc26sml7
title: CCDC 2049459: Experimental Crystal Structure Determination

description: Related Article: Hayato Fujimoto, Momoka Kusano, Takuya Kodama, Mamoru Tobisu|2021|J.Am.Chem.Soc.|143|18394|doi:10.1021/jacs.1c10042
DOI: 10.5517/ccdc.csd.cc26smm8
title: CCDC 2049460: Experimental Crystal Structure Determination

description: Related Article: Hayato Fujimoto, Momoka Kusano, Takuya Kodama, Mamoru Tobisu|2021|J.Am.Chem.Soc.|143|18394|doi:10.1021/jacs.1c10042
DOI: 10.5517/ccdc.csd.cc26w34c
title: CCDC 2051832: Experimental Crystal Structure Determination

description: Related Article: Hayato Fujimoto, Momoka Kusano, Takuya Kodama, Mamoru Tobisu|2021|J.Am.Chem.Soc.|143|18394|doi:10.1021/jacs.1c10042
DOI: 10.15468/s5bw8j
title: Cyana ebigane, a new species from Gabon (Lepidoptera: Erebidae: Arctiinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Volynkin, Anton V., Karisch, Timm, Durante, Antonio (2021): Cyana ebigane, a new species from Gabon (Lepidoptera: Erebidae: Arctiinae). Zootaxa 5068 (3): 435-442, DOI: https://doi.org/10.11646/zootaxa.5068.3.8
DOI: 10.15468/a86d6g
title: A new species of Anteon from Zimbabwe (Hymenoptera, Dryinidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Olmi, Massimo, Capradossi, Leonardo, Guglielmino, Adalgisa (2021): A new species of Anteon from Zimbabwe (Hymenoptera, Dryinidae). Zootaxa 5068 (3): 443-447, DOI: https://doi.org/10.11646/zootaxa.5068.3.9
DOI: 10.15156/bio/sh302488.07fu
title: SH302488.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh302489.07fu
title: SH302489.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1665517.08fu
title: SH1665517.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1665518.08fu
title: SH1665518.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1665519.08fu
title: SH1665519.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh302490.07fu
title: SH302490.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh302491.07fu
title: SH302491.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.