cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.y9m9pa
title: Occurrence Download

description: A dataset containing 252 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Chorizanthe rigida (Torr.) Torr. & A.Gray",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 252 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011416-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15560981
title: (Artifact for) Human vs AI: Insecure Use of Security-sensitive Functions in AI-generated Code in Comparison to Human-written Code (ACSAC 2025)

description: Artifact for the ACSAC 2025 paper submission: "Human vs AI: Insecure Use of Security-sensitive Functions in AI-generated Code in Comparison to Human-written Code".
DOI: 10.5281/zenodo.15560982
title: (Artifact for) Human vs AI: Insecure Use of Security-sensitive Functions in AI-generated Code in Comparison to Human-written Code (ACSAC 2025)

description: Artifact for the ACSAC 2025 paper submission: "Human vs AI: Insecure Use of Security-sensitive Functions in AI-generated Code in Comparison to Human-written Code".
DOI: 10.15468/dl.cmtfum
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Maulisia mauli Parr, 1960",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((47.4981 -25.2951,47.5481 -25.1504,44.9648 -25.1504,44.9648 -26.0621,45.53 -26.0805,46.4427 -25.6738,46.9062 -25.6462,47.4981 -25.2951))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011417-250525065834625/datasets/export for details.
DOI: 10.15468/dl.kz2f5m
title: Occurrence Download

description: A dataset containing 639476 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Fragaria vesca L."
 ]
}

 The dataset includes 639476 records from 2454 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011405-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.fttdz08td
title: The broken-wing display across birds and the conditions for its evolution

description: The broken-wing display is a well-known and conspicuous deceptive signal
 used to protect birds’ broods against diurnal terrestrial predators.
 Although commonly associated with shorebirds, it remains unknown how
 common the behaviour is across birds and what forces are associated with
 the evolution of the display. Here, we use the broken-wing display as a
 paradigmatic example to study the evolution of a behaviour across Aves. We
 show that the display is widespread: it has been described in 52 families
 spread throughout the phylogeny, suggesting that it independently evolved
 multiple times. Further, we evaluated the association with sixteen
 ecological and life-history variables hypothesized to be related to the
 evolution of the broken-wing display. Eight variables were associated with
 the display. We found that species breeding farther from the equator, in
 more dense environments, with shorter incubation periods and relatively
 little nest cover were more likely to perform the display, as were those
 in which only one parent incubates eggs, species that mob nest predators
 and species that are altricial or multi-brooded. Collectively, our
 comprehensive approach identified forces associated with the repeated
 evolution of this conspicuous display, thereby providing new insights into
 how deceptive behaviours evolve in the context of predator-prey
 interactions.
description: Data included in this dataset were assembled from existing
 sources as described in the resulting publication and in the ReadMe
 file.
description: See the ReadMe file for a detailed account of the different files
 and their content.
DOI: 10.5061/dryad.8kprr4xp9
title: Rapid radiation of Southern Ocean shags in response to receding sea ice

description: Aim: Understanding how wild populations respond to climatic shifts is a
 fundamental goal of biological research in a fast-changing world. The
 Southern Ocean represents a fascinating system for assessing large-scale
 climate-driven biological change, as it contains extremely isolated island
 groups within a predominantly westerly, circumpolar wind and current
 system. The blue-eyed shags (Leucocarbo spp.) represent a paradoxical
 Southern Ocean seabird radiation; a circumpolar distribution implies
 strong dispersal capacity yet their speciose nature suggests local
 adaptation and isolation. Here we use genetic tools in an attempt to
 resolve this paradox. Location: Southern Ocean. Taxa: 17 species and
 subspecies of blue-eyed shags (Leucocarbo spp.) across the geographical
 distribution of the genus. Methods: Here we use mitochondrial and nuclear
 sequence data to conduct the first global genetic analysis of this group
 using a temporal phylogenetic framework to test for rapid speciation.
 Results: Our analysis reveals remarkably shallow evolutionary histories
 among island-endemic lineages, consistent with a recent high-latitude
 circumpolar radiation. This rapid sub-Antarctic expansion contrasts with
 significantly deeper lineages detected in more temperate regions such as
 South America and New Zealand that may have acted as glacial refugia. The
 dynamic history of high-latitude expansions is further supported by
 ancestral demographic and biogeographic reconstructions. Main conclusions:
 The circumpolar distribution of blue-eyed shags, and their highly dynamic
 evolutionary history, potentially make Leucocarbo a strong sentinel of
 past and ongoing Southern Ocean ecosystem change given their sensitivity
 to climatic impacts.
DOI: 10.5061/dryad.2v6wwpzp0
title: Data from: Parallel cognitive processing streams in human prefrontal cortex: parsing areal-level brain network for response inhibition

description: Multiple cognitive processes are recruited to achieve adaptive behavior.
 However, it is poorly understood how such cognitive processes are
 implemented in temporal cascades of human cerebral cortical areas as
 processing streams to achieve behavior. In the present study, we identify
 cortical processing streams for response inhibition and examine
 relationships among the processing streams. Functional magnetic resonance
 imaging (MRI) and time-resolved single-pulse transcranial magnetic
 stimulation (TMS) reveal three distinct critical timings of transient
 disruption in the functionally essential cortical areas that belong to two
 distinct cerebrocortical networks. Furthermore, single-pulse TMS following
 suppression of the ventral posterior inferior frontal cortex (vpIFC) with
 repetitive TMS reveals information flow from the vpIFC to the
 presupplementary motor area (preSMA) within the same network but not to
 the dorsal posterior inferior frontal cortex (dpIFC) across different
 networks. These causal behavioral effects suggest two parallel processing
 streams (vpIFC-preSMA versus dpIFC-intraparietal sulcus) that act
 concurrently during response inhibition.
DOI: 10.5061/dryad.02v6wwq3v
title: Geographical variables of invasive Mikania micrantha populations

description: Why invasive species can rapidly adapt to novel environments
 is a puzzling question known
 as the genetic paradox of invasive species. This
 paradox is explainable in
 terms of transposable elements (TEs) activity,
 which are theorized to be powerful mutational
 forces to create genetic variation. Mikania
 micrantha, a noxious invasive weed, in this
 sense provides an excellent opportunity
 to test the explanation. The genetic
 and epigenetic variation of 21 invasive populations
 of M. micrantha in southern
 China have been examined by using Transposon DisplayTD) and Transposon Methylation Display (TMD) techniques to survey 12 TE superfamilies. Our results showed that M. micrantha populations maintained an almost equally high level of TE-based genetic and epigenetic variation and they have been differentiated into subpopulations genetically and epigenetically. A similar positive spatial genetic and epigenetic structure pattern was observed within 300 m. Six and seven TE superfamilies presented significant genetic and epigenetic isolation by distance (IBD) pattern. In total, 59 genetic and 86 epigenetic adaptive TE loci were identified. Of them, 51 genetic and 44 epigenetic loci were found to correlate with 25 environmental variables (including precipitation, temperature, vegetation coverage, and soil metals). Twenty-five transposon-inserted genes were sequenced and homology-based annotated, which are found to be involved in a variety of molecular and cellular functions. Our research consolidates the importance of TE-associated genetic and epigenetic variation in the rapid adaptation and invasion of M. micrantha.
DOI: 10.5061/dryad.vx0k6djs8
title: An evolutionary explanation of female-biased sexual size dimorphism in North Sea plaice, Pleuronectes platessa L.

description: Sexual size dimorphism (SSD) is caused by differences in selection
 pressures and life-history trade-offs faced by males and females.
 Proximate causes of SSD may involve sex-specific mortality, energy
 acquisition, and energy expenditure for maintenance, reproductive tissues,
 and reproductive behavior. Using a quantitative, individual-based,
 eco-genetic model parameterized for North Sea plaice, we explore the
 importance of these mechanisms for female-biased SSD, under which males
 are smaller and reach sexual maturity earlier than females (common among
 fish, but also arising in arthropods and mammals). We consider two
 mechanisms potentially serving as ultimate causes: (a) Male investments in
 male reproductive behavior might evolve to detract energy resources that
 would otherwise be available for somatic growth, and (b) diminishing
 returns on male reproductive investments might evolve to reduce energy
 acquisition. In general, both of these can bring about smaller male body
 sizes. We report the following findings. First, higher investments in male
 reproductive behavior alone cannot explain the North Sea plaice SSD. This
 is because such higher reproductive investments require increased energy
 acquisition, which would cause a delay in maturation, leading to
 male-biased SSD contrary to observations. When accounting for the observed
 differential (lower) male mortality, maturation is postponed even further,
 leading to even larger males. Second, diminishing returns on male
 reproductive investments alone can qualitatively account for the North Sea
 plaice SSD, even though the quantitative match is imperfect. Third, both
 mechanisms can be reconciled with, and thus provide a mechanistic basis
 for, the previously advanced Ghiselin–Reiss hypothesis, according to which
 smaller males will evolve if their reproductive success is dominated by
 scramble competition for fertilizing females, as males would consequently
 invest more in reproduction than growth, potentially implying lower
 survival rates, and thus relaxing male–male competition. Fourth, a good
 quantitative fit with the North Sea plaice SSD is achieved by combining
 both mechanisms while accounting for sex-specific costs males incur during
 their spawning season. Fifth, evolution caused by fishing is likely to
 have modified the North Sea plaice SSD.
description: Data on empirical measurements of the life history of North Sea
 plaice for several decades was obtained from the Dutch market sampling
 program and scientific surveys. Data on theoretical
 predictions of the life history of North Sea plaice was obtained from
 several model runs using C, according to the attached code example for the
 present population at equilibrium.
DOI: 10.15468/dl.7527p8
title: Occurrence Download

description: A dataset containing 1075 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lethe rohria"
 ]
}

 The dataset includes 1075 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002920-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.1jwstqjvx
title: Phylogenetic data for the description of Phytophthora heterospora sp. nov.

description: Since 1999, an unusual Phytophthora species has
 repeatedly been found associated with stem lesions, root and collar rot on
 young olive trees in Southern Italy. In all cases, this species was
 obtained from new commercial plantations or from nursery seedlings.
 Morphologically the Phytophthora isolates were
 characterized by the abundant production of caducous conidia and
 sporangia, resembling P.
 palmivora var. heterocystica. Additional isolates with
 similar features were obtained from nursery plants of Ziziphus
 spina-christi in Iran, Juniperus
 oxycedrus and Capparis spinosa in Italy, and
 mature trees in commercial farms of Durio zibethinus in
 Vietnam. In this study, morphology, breeding system and growth
 characteristics of these unusual Phytophthora isolates
 were examined, and a combined mitochondrial and nuclear multigene
 phylogenetic analysis was performed. The proportion between conidia and
 sporangia varied amongst isolates and depending on the availability of
 free water. Oogonia with amphigynous antheridia and aplerotic oospores
 were produced in dual cultures with an A2 mating type strain
 of P. palmivora indicating all isolates belonged to the
 A1 mating type. Phylogenetically, these isolates grouped in a distinct
 well-supported clade sister to P. palmivora, indicating
 they constitute a separate species. The new species, described here
 as Phytophthora heterospora sp. nov., proved to be
 highly pathogenic to both olive and durian plants in artificial stem
 inoculations.
description: To sort out the phylogenetic position of
 <i>Phytophthora heterospora</i> within phylogenetic Clade
 4<i>,</i> a concatenated 4-partition dataset of the nuclear
 (ITS, <i>Btub</i>) and mitochondrial loci
 (<i>cox</i>1, <i>nadh</i>1), consisting of 4,161
 characters, was analysed. The sequences obtained in this study were
 complemented with publicly available sequences from the GenBank Nucleotide
 Collection and GenBank Whole-Genome Shotgun
 contigs. Briefly, the
 sequences of the loci used in the analyses were aligned using the online
 version of MAFFT v. 7. Bayesian Inference (BI) analysis was
 performed using MrBayes version 3.2.7 and Maximum-Likelihood (ML) analysis
 was carried out using the raxmlGUI v. 2.0 implementation of
 RAxML. Detailed methodology can be found on the
 official publication "Phytophthora heterospora sp. nov., a new
 pseudoconidia-producing sister species of P. palmivora".
description: Data supplied: - Table for identification of
 species, isolates and sequences used on the phylogenetic
 analyses; - Input files used in MrBayes and
 raxmlGUI; - Original trees obtained from the BI and ML
 analyses.
DOI: 10.5061/dryad.2v6wwpzp1
title: Expression levels and activities of energy-yielding ATPases in the oligohaline neritid snail Theodoxus fluviatilis under changing environmental salinities

description: The aquatic gastropod Theodoxus fluviatilis occurs in Europe and adjacent
 areas of Asia. The snail species has formed two genetically closely
 related subgroups, the freshwater ecotype (FW) and the brackish water
 ecotype (BW). Other than individuals of the FW ecotype, those of the BW
 ecotype survive in salinities of up to 28‰. Coastal aquatic ecosystems may
 be affected by climate change due to salinization. Thus, we investigated
 how the two Theodoxus ecotypes adjust to changes in environmental salinity
 focussing on the question whether Na+ /K+ -ATPase or V-ATPase are
 regulated on the transcriptional, the translational or at the activity
 level under changing external salinities. Animals were gradually adjusted
 to extreme salinities in containers under long-day conditions and constant
 temperature. Whole body RNA- or protein extracts were prepared.
 Semi-quantitative PCR and Western Blot-analyses did not reveal major
 changes in transcript or protein abundances for the two transporters under
 low or high salinity conditions. No significant changes in ATPase
 activities in whole body extracts of animals adjusted to high or low
 salinity conditions were detected. We conclude that constitutive
 expression of ATPases is sufficient to support osmotic and ion regulation
 in this species under changing salinities given the high level of
 tolerance with respect to changes in body fluid volume.
DOI: 10.5061/dryad.m37pvmd2z
title: MO2, behaviour data and supplementary material for the first physiological evidence of sleep in sharks

description: Sharks represent the earliest group of jawed vertebrates and as such, they
 may provide original insight for understanding the evolution of sleep in
 more derived animals. Unfortunately, beyond a single behavioural
 investigation, very little is known about sleep in these ancient
 predators. As such, recordings of physiological indicators of sleep in
 sharks have never been reported. Reduced energy expenditure arising from
 sustained restfulness and lowered metabolic rate during sleep have given
 rise to the hypothesis that sleep plays an important role for energy
 conservation. To determine whether this idea applies also to sharks, we
 compared metabolic rates of draughtsboard sharks (Cephaloscyllium
 isabellum) during periods ostensibly thought to be sleep, along with
 restful and actively swimming sharks across a 24-h period. We also
 investigated behaviours that often characterise sleep in other animals,
 including eye closure and postural recumbency, to establish relationships
 between physiology and behaviour. Overall, lower metabolic rate and a flat
 body posture reflect sleep in draughtsboard sharks, whereas eye closure is
 a poorer indication of sleep. Our results support the idea for the
 conservation of energy as a function of sleep in these basal vertebrates.
DOI: 10.5061/dryad.ttdz08m00
title: Anthropogenic noise, song, and territorial aggression in southern house wrens

description: Anthropogenic noise constrains the transmission of birdsong and alters the
 behavior of receivers. Many birds adjust their acoustic signals to
 minimize the interference of anthropogenic noise on signal transmission.
 Birds may also change their acoustic signals to exchange information
 during aggressive interactions. However, it is unclear how birds deal with
 a potential trade-off between adjusting their acoustic signals to better
 transmit in noisy environments versus mediating aggressive interactions.
 Additionally, we do not know how urbanization and anthropogenic noise
 alters the territorial behavior of receivers. We investigated the
 interplay among song, territorial aggression, urbanization, and
 anthropogenic noise, in males of the southern house wren (Troglodytes
 aedon musculus), using recordings of spontaneous songs (non-aggressive
 context) and a playback experiment simulating a male territorial intrusion
 (aggressive context). We found that urban wrens behaved more aggressively
 in response to the intruder by singing more and spent more time closer to
 the intruder than rural wrens regardless of noise. Males produced songs
 with lower minimum frequency and trills with wider frequency bandwidth and
 higher vocal performance under acute (playback) than relaxed
 (post-playback) aggressive encounters. These results suggest that males
 use songs to communicate aggressive intent or fighting ability. Urban
 wrens produced higher-pitched songs and trills than rural wrens
 irrespective of aggressive context. Urban wrens in the noisiest
 territories also produced the highest-pitched trills but only in the
 non-aggressive context. Rural wrens in the noisiest territories tended to
 produce the longest songs (non-aggressive context) or produced the
 shortest songs (aggressive context). Results suggest that urbanization
 affects territorial and vocal behaviors in southern house wrens. Males in
 this species seem to primarily adjust acoustic signals in response to the
 territorial intruder rather than noise.
DOI: 10.5061/dryad.cnp5hqc59
title: Heterogeneous environmental seascape across a biogeographic brake influences the thermal physiology and tolerances to ocean acidification in an ecosystem

description: Aim: Understanding how spatio-temporal environmental variability
 influences stress tolerance, local adaptation, and phenotypic variation
 among populations is a key challenge for evolutionary ecology and climate
 change biology. Coastal biogeographic breaks are natural laboratories to
 explore this fundamental research question due to the contrasting
 environmental conditions experienced by natural populations across these
 regions. Location: In the South East Pacific (SEP) coast a major break
 (30º-32ºS) is characterized by extreme natural variability in sea surface
 temperature (SST) and carbonate chemistry parameters related to temporal
 and spatial dynamics in upwelling events. Calcifying organisms inhibiting
 this zone are exposed to marked fluctuations and clines in SST that
 together with naturally acidified waters can impact their metabolism,
 calcification and fitness, making them particularly prone to the effects
 of climate change (e.g., ocean acidification, OA). We investigated to what
 extent the spatial and temporal environmental variability (in SST and
 seawater carbonate conditions) that characterizes the biogeographic break
 in the SEP, influences intra-specific differences in the thermal ecology
 and the tolerances to OA of the limpet Scurria araucana. Methods: During
 two years, we conducted field surveys of limpet populations at sites
 across the SEP break (27ºS, 30ºS and 32ºS). We collected individuals from
 each population to test for geographic differences in morphometric (e.g.,
 total buoyancy weight, shell length) and physiological (e.g., oxygen
 consumption rate, cardiac activity, and thermal performance curves; TPC)
 responses to local environmental conditions (Tº and pH/pCO2) and to
 simulated OA scenarios. Results: Populations of S. Araucana exhibit high
 tolerance to OA with no signal of geographic influence on this attribute.
 However, inter-population differences in thermal physiology (metabolic
 rates and performances) where found across the biogeographic break in the
 SEP coast. Limpets from the central part of the break (30ºS) exhibit
 higher thermal performance compared to limpets from populations at both
 sides of the break. Main conclusions: Variation in SST has a greater
 effect shaping inter-population differences in thermal physiology of the
 limpet S. araucana. These physiological differences are aligned the
 thermal heterogenous seascape along the biogeographic break in the SEP.
 Contrary, temporal and spatial variation in seawater carbonate conditions
 does not influence inter-population differences in phenotypic response
 populations, but an overall high tolerance to OA.
description: Data of environmental variables were collected from the field.
 Data on physiological and life-history traits were obtained in the
 laboratory.