cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3795543
title: Data for the paper "How many is too many? On the relationship between research productivity and impact", forthcoming in PLOS One.

description: Table and Figures from the paper How many is too many? On the relationship between research productivity and impact, forthcoming in PLOS One.<br>Fig 1. Number of disambiguated researchers, by year of first publication and broad field Fig 2. Proportion of top 1% most cited papers (y axis), as a function of the number of papers published (x axis), for the cohort of researchers who have published their career number between 1981 and 1985, by domain. Only classes of numbers of papers with 30 researchers or more are shown. Power trendlines and R2 are were obtained using the Excel software Fig 3. Proportion of top 1% most cited papers, as a function of their number of papers published, for the cohort of researchers who have published their first paper between 2009 and 2013, by domain. Only classes of numbers of papers with 30 researchers or more are shown. Power trendlines and R2 are used for natural sciences and social and behavioral sciences, while 2nd order polynomials are used for medical and life sciences, and law, arts and humanities. Fig 4. Proportion of top 1% most cited papers for all cohorts of researchers, by domain. A) As a function of career length, B) As a function of their annual number of papers (rounded). Only groups with 30 researchers or more are shown.Appendix 1. Main descriptive values for scholars covered by the analysis
DOI: 10.6084/m9.figshare.3795543.v1
title: Data Figshare.xlsx

description: Table and Figures from the paper How many is too many? On the relationship between research productivity and impact, forthcoming in PLOS One.
DOI: 10.6084/m9.figshare.3795471.v1
title: Effects of whole spine alignment patterns on neck responses in rear end impact

description: <b>Objective</b>: The aim of this study was to investigate the whole spine alignment in automotive seated postures for both genders and the effects of the spinal alignment patterns on cervical vertebral motion in rear impact using a human finite element (FE) model. <b>Methods</b>: Image data for 8 female and 7 male subjects in a seated posture acquired by an upright open magnetic resonance imaging (MRI) system were utilized. Spinal alignment was determined from the centers of the vertebrae and average spinal alignment patterns for both genders were estimated by multidimensional scaling (MDS). An occupant FE model of female average size (162 cm, 62 kg; the AF 50 size model) was developed by scaling THUMS AF 05. The average spinal alignment pattern for females was implemented in the model, and model validation was made with respect to female volunteer sled test data from rear end impacts. Thereafter, the average spinal alignment pattern for males and representative spinal alignments for all subjects were implemented in the validated female model, and additional FE simulations of the sled test were conducted to investigate effects of spinal alignment patterns on cervical vertebral motion. <b>Results</b>: The estimated average spinal alignment pattern was slight kyphotic, or almost straight cervical and less-kyphotic thoracic spine for the females and lordotic cervical and more pronounced kyphotic thoracic spine for the males. The AF 50 size model with the female average spinal alignment exhibited spine straightening from upper thoracic vertebra level and showed larger intervertebral angular displacements in the cervical spine than the one with the male average spinal alignment. <b>Conclusions</b>: The cervical spine alignment is continuous with the thoracic spine, and a trend of the relationship between cervical spine and thoracic spinal alignment was shown in this study. Simulation results suggested that variations in thoracic spinal alignment had a potential impact on cervical spine motion as well as cervical spinal alignment in rear end impact condition.
DOI: 10.6084/m9.figshare.3795453
title: After-effects and disabilities in traffic crash victims in northern Brazil

description: <b>Objectives</b>: The objective of this study was to identify the characteristics related to crash and victim, as well as the after-effects/disabilities and consequences arising from traffic crashes occurring in the city of Rio Branco–Acre. <b>Methods</b>: This is an analytical descriptive cross-sectional study conducted in the City of Rio Branco–Acre. The study population consisted of 405 residents of the city who were victims of traffic crashes, of all age groups and genders, who were hospitalized for the first time as a result of the crash in public hospitals and the health system network, as recorded in the Hospital Information System, and who were discharged between January 1 and December 31, 2010. The data sources included hospital record consultations and active searches for the victims. Hierarchical logistic regression was performed to evaluate the factors associated with the after-effects. <b>Results</b>: The majority of the study population was motorcycle victims (68.6%), male, and young (20–39 years). Concerning the after-effects, the following were significantly associated: factors related to the presence of a postcrash activity limitation (odds ratio [OR] = 2.39; 95% confidence interval [CI], 2.39–6.76), length of hospital stay in days (OR = 1 03; 95% CI, 1.01–1.06), and surgical treatment (OR = 1.82; 95% CI, 1.03–3.21). Those who suffered damage to soft tissue and nerves or facial injury showed an odds ratio of 2 to 4 times of having an after-effect/disability, independent of the victim's personal attributes. <b>Conclusion</b>: The mechanism, such as the origin of the pattern of injuries, explains the exposure factors shown by each attribute of the victim and their characteristics. Many of the injuries were precursors to after-effects/disabilities, which, due to their nature and extent, result in the modification of the apparently healthy living standards of young victims who are routinely injured in traffic crashes. Therefore, public policies for prevention should be formulated, reformulated, and implemented, taking into account each attribute of the victims and their social conditions, because these are closely related to their habits and customs. This is a starting point for promoting changes to the current reality that traffic crashes present in the morbidity and mortality of the population.
DOI: 10.6084/m9.figshare.3795453.v2
title: After-effects and disabilities in traffic crash victims in northern Brazil

description: <b>Objectives</b>: The objective of this study was to identify the characteristics related to crash and victim, as well as the after-effects/disabilities and consequences arising from traffic crashes occurring in the city of Rio Branco–Acre. <b>Methods</b>: This is an analytical descriptive cross-sectional study conducted in the City of Rio Branco–Acre. The study population consisted of 405 residents of the city who were victims of traffic crashes, of all age groups and genders, who were hospitalized for the first time as a result of the crash in public hospitals and the health system network, as recorded in the Hospital Information System, and who were discharged between January 1 and December 31, 2010. The data sources included hospital record consultations and active searches for the victims. Hierarchical logistic regression was performed to evaluate the factors associated with the after-effects. <b>Results</b>: The majority of the study population was motorcycle victims (68.6%), male, and young (20–39 years). Concerning the after-effects, the following were significantly associated: factors related to the presence of a postcrash activity limitation (odds ratio [OR] = 2.39; 95% confidence interval [CI], 2.39–6.76), length of hospital stay in days (OR = 1 03; 95% CI, 1.01–1.06), and surgical treatment (OR = 1.82; 95% CI, 1.03–3.21). Those who suffered damage to soft tissue and nerves or facial injury showed an odds ratio of 2 to 4 times of having an after-effect/disability, independent of the victim's personal attributes. <b>Conclusion</b>: The mechanism, such as the origin of the pattern of injuries, explains the exposure factors shown by each attribute of the victim and their characteristics. Many of the injuries were precursors to after-effects/disabilities, which, due to their nature and extent, result in the modification of the apparently healthy living standards of young victims who are routinely injured in traffic crashes. Therefore, public policies for prevention should be formulated, reformulated, and implemented, taking into account each attribute of the victims and their social conditions, because these are closely related to their habits and customs. This is a starting point for promoting changes to the current reality that traffic crashes present in the morbidity and mortality of the population.
DOI: 10.6084/m9.figshare.3795453.v1
title: After-Effects And Disabilities in Traffic Crash Victims in Northern Brazil

description: <b>Objectives</b>: To identify the characteristics related to crash and victim, as well as the after-effects/disabilities and consequences arising from traffic crashes occurring in the city of Rio Branco - Acre. <b>Methods</b>: This is an analytical descriptive cross-sectional study conducted in the City of Rio Branco - Acre. The study population consisted of 405 residents of the city who were victims of traffic crashes, of all age groups and genders, who were hospitalized for the first time as a result of the crash in public hospitals and the Health System network, as recorded in the Hospital Information System, and who were discharged between January 1 and December 31, 2010. The data sources were comprised of hospital record consultations and active searches for the victims. Hierarchical logistic regression was performed to evaluate the factors associated with the after-effects. <b>Results</b>: The majority of the study population corresponded to motorcycle victims (68.6%), male, and young (20–39 years). Concerning the outcome “after-effects,” the following were significantly associated: factors related to the presence of a post-crash activity limitation (OR = 2.39; 2.39–6.76), length of hospital stay in days (OR = 1 03; 1.01–1.06), and surgical treatment (OR = 1.82; 1.03–3.21). Those who suffered damage to soft tissue and nerves or facial injury showed an odds ratio of two to four times of having an after-effect/disability, independent of the victim's personal attributes. <b>Conclusion</b>: The mechanism, such as the origin of the pattern of injuries, explains the exposure factors shown by each attribute of the victim and their characteristics. Many of the injuries were precursors to after-effects/disabilities, which, due to their nature and extent, result in the modification of the apparently healthy living standards of young victims who are routinely injured in traffic crashes. Therefore, public policies for prevention should be formulated, reformulated, and implemented, taking into account each attribute of the victims and their social conditions, as these are closely related to their habits and customs. This is a starting point for promoting changes to the current reality that traffic crashes present in the morbidity and mortality of the population.
DOI: 10.6084/m9.figshare.3795345
title: <i>IAINBAXTER&raisonnE</i>: A Media Ecology Perspective for Visual Resources

description: This article explores the creative philosophy of information developed by conceptual artist IAIN BAXTER& (Joseph Iain Wilson Baxter; b. 1936) since the mid-1960s, in tandem with the artist's personal information management (PIM) behaviors, as influences on the design of the experimental <i>IAINBAXTER&raisonnE</i>. In particular, it investigates the extent to which the ideas of Canadian media theorist Marshall McLuhan (1911–1980)—a perennial influence on BAXTER& since at least 1965—have in turn shaped the media ecology perspective adopted by <i>IB&raisonnE</i> developers. The article reviews the main features of McLuhan's media ecology and gives a summary of the methods and instruments deployed by <i>IB&raisonnE</i> participants to develop an innovative metadata structure for this resource that is adapted to the unique requirements of BAXTER&'s McLuhanesque information art and information behaviors.
DOI: 10.6084/m9.figshare.3795345.v1
title: <i>IAINBAXTER&raisonnE</i>: A Media Ecology Perspective for Visual Resources

description: This article explores the creative philosophy of information developed by conceptual artist IAIN BAXTER& (Joseph Iain Wilson Baxter; b. 1936) since the mid-1960s, in tandem with the artist's personal information management (PIM) behaviors, as influences on the design of the experimental <i>IAINBAXTER&raisonnE</i>. In particular, it investigates the extent to which the ideas of Canadian media theorist Marshall McLuhan (1911–1980)—a perennial influence on BAXTER& since at least 1965—have in turn shaped the media ecology perspective adopted by <i>IB&raisonnE</i> developers. The article reviews the main features of McLuhan's media ecology and gives a summary of the methods and instruments deployed by <i>IB&raisonnE</i> participants to develop an innovative metadata structure for this resource that is adapted to the unique requirements of BAXTER&'s McLuhanesque information art and information behaviors.
DOI: 10.6084/m9.figshare.3795330
title: Data and code to reproduce Dallas, Park, and Drake 2016 "Predictability of helminth parasite host range using information on geography, host traits and parasite community structure"

description: This repository contains files necessary to reproduce analyses and figures from <br>Dallas, T., A.W. Park, and J.M. Drake. 2016. Predictability of helminth parasite host range using information on geography, host traits and parasite community structure. <i>Parasitology</i>. doi:10.1017/S0031182016001608. <br>The aim of the paper was to predict the set of host species capable of being infected by a given parasite. Models were trained for each parasite species in a set of over 500 helminth parasites. We found that the existing parasite community was important to accurate identification of permissive host species, suggesting that the parasite community of a host species contains information that is more useful for predicting host suitability than host traits, geographic location, or host taxonomy. <br><i>Note</i>: the code currently requires a minimum of a 5 core workstation (the n.cores argument can be changed though in the gbm function). Be mindful of memory usage as well. While I don't recall exact benchmarks, I believe the full set of models took at least 48 hours to run on a decently equipped workstation (16 core; 3.0 Ghz processor). <br><br><br>
DOI: 10.6084/m9.figshare.3795246
title: Management performance indicators based on year-class histories

description: Suggested indicators for management performance.
DOI: 10.6084/m9.figshare.3795246.v1
title: Management performance indicators based on year-class histories

description: Suggested indicators for management performance.
DOI: 10.6084/m9.figshare.3793782
title: Dissecting the secondary structure of the circular RNA of a nuclear viroid <i>in vivo</i>: A “naked” rod-like conformation similar but not identical to that observed <i>in vitro</i>

description: With a minimal (250–400 nt), non-protein-coding, circular RNA genome, viroids rely on sequence/structural motifs for replication and colonization of their host plants. These motifs are embedded in a compact secondary structure whose elucidation is crucial to understand how they function. Viroid RNA structure has been tackled <i>in silico</i> with algorithms searching for the conformation of minimal free energy, and <i>in vitro</i> by probing in solution with RNases, dimethyl sulphate and bisulphite, and with selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE), which interrogates the RNA backbone at single-nucleotide resolution. However, <i>in vivo</i> approaches at that resolution have not been assayed. Here, after confirming by 3 termodynamics-based predictions and by <i>in vitro</i> SHAPE that the secondary structure adopted by the infectious monomeric circular (+) RNA of potato spindle tuber viroid (PSTVd) is a rod-like conformation with double-stranded segments flanked by loops, we have probed it <i>in vivo</i> with a SHAPE modification. We provide direct evidence that a similar, but not identical, rod-like conformation exists in PSTVd-infected leaves of <i>Nicotiana benthamiana</i>, verifying the long-standing view that this RNA accumulates <i>in planta</i> as a “naked” form rather than tightly associated with protecting host proteins. However, certain nucleotides of the central conserved region, including some of the loop E involved in key functions such as replication, are more SHAPE-reactive <i>in vitro</i> than <i>in vivo</i>. This difference is most likely due to interactions with proteins mediating some of these functions, or to structural changes promoted by other factors of the <i>in vivo</i> habitat.
DOI: 10.6084/m9.figshare.3793782.v2
title: Dissecting the secondary structure of the circular RNA of a nuclear viroid <i>in vivo</i>: A “naked” rod-like conformation similar but not identical to that observed <i>in vitro</i>

description: With a minimal (250–400 nt), non-protein-coding, circular RNA genome, viroids rely on sequence/structural motifs for replication and colonization of their host plants. These motifs are embedded in a compact secondary structure whose elucidation is crucial to understand how they function. Viroid RNA structure has been tackled <i>in silico</i> with algorithms searching for the conformation of minimal free energy, and <i>in vitro</i> by probing in solution with RNases, dimethyl sulphate and bisulphite, and with selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE), which interrogates the RNA backbone at single-nucleotide resolution. However, <i>in vivo</i> approaches at that resolution have not been assayed. Here, after confirming by 3 termodynamics-based predictions and by <i>in vitro</i> SHAPE that the secondary structure adopted by the infectious monomeric circular (+) RNA of potato spindle tuber viroid (PSTVd) is a rod-like conformation with double-stranded segments flanked by loops, we have probed it <i>in vivo</i> with a SHAPE modification. We provide direct evidence that a similar, but not identical, rod-like conformation exists in PSTVd-infected leaves of <i>Nicotiana benthamiana</i>, verifying the long-standing view that this RNA accumulates <i>in planta</i> as a “naked” form rather than tightly associated with protecting host proteins. However, certain nucleotides of the central conserved region, including some of the loop E involved in key functions such as replication, are more SHAPE-reactive <i>in vitro</i> than <i>in vivo</i>. This difference is most likely due to interactions with proteins mediating some of these functions, or to structural changes promoted by other factors of the <i>in vivo</i> habitat.
DOI: 10.6084/m9.figshare.3793782.v1
title: Dissecting the secondary structure of the circular RNA of a nuclear viroid <i>in vivo</i>: a “naked” rod-like conformation similar but not identical to that observed <i>in vitro</i>

description: With a minimal (250–400 nt), non-protein-coding, circular RNA genome, viroids rely on sequence/structural motifs for replication and colonization of their host plants. These motifs are embedded in a compact secondary structure whose elucidation is crucial to understand how they function. Viroid RNA structure has been tackled <i>in silico</i> with algorithms searching for the conformation of minimal free energy, and <i>in vitro</i> by probing in solution with RNases, dimethyl sulphate and bisulphate, and with selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE), which interrogates the RNA backbone at single-nucleotide resolution. However, <i>in vivo</i> approaches at that resolution have not been assayed. Here, after confirming by three termodynamics-based predictions and by <i>in vitro</i> SHAPE that the secondary structure adopted by the infectious monomeric circular (+) RNA of potato spindle tuber viroid (PSTVd) is a rod-like conformation with double-stranded segments flanked by loops, we have probed it <i>in vivo</i> with a SHAPE modification. We provide direct evidence that a similar, but not identical, rod-like conformation exists in PSTVd-infected leaves of <i>Nicotiana benthamiana</i>, verifying the long-standing view that this RNA accumulates <i>in planta</i> as a “naked” form rather than tightly associated with protecting host proteins. However, certain nucleotides of the central conserved region, including some of the loop E involved in key functions such as replication, are more SHAPE-reactive <i>in vitro</i> than <i>in vivo</i>. This difference is most likely due to interactions with proteins mediating some of these functions, or to structural changes promoted by other factors of the <i>in vivo</i> habitat.
DOI: 10.6084/m9.figshare.3793740
title: Reversals of Least-Squares Estimates and Model-Invariant Estimation for Directions of Unique Effects

description: When a linear model is adjusted to control for additional explanatory variables the sign of a fitted coefficient may reverse. Here these reversals are studied using coefficients of determination. The resulting theory can be used to determine directions of unique effects in the presence of model uncertainty. This process is called model-invariant estimation when the estimates are invariant across changes to the model structure. When a single covariate is added, the reversal region can be understood geometrically as an elliptical cone of two nappes with an axis of symmetry relating to a best-possible condition for a reversal using a single coefficient of determination. When a set of covariates are added to a model with a single explanatory variable, model-invariant estimation can be implemented using subject matter knowledge. More general theory with partial coefficients is applicable to analysis of large data sets. Applications are demonstrated with dietary health data from the United Nations.
DOI: 10.6084/m9.figshare.3793740.v1
title: Reversals of Least-Squares Estimates and Model-Invariant Estimation for Directions of Unique Effects

description: When a linear model is adjusted to control for additional explanatory variables the sign of a fitted coefficient may reverse. Here these reversals are studied using coefficients of determination. The resulting theory can be used to determine directions of unique effects in the presence of model uncertainty. This process is called model-invariant estimation when the estimates are invariant across changes to the model structure. When a single covariate is added, the reversal region can be understood geometrically as an elliptical cone of two nappes with an axis of symmetry relating to a best-possible condition for a reversal using a single coefficient of determination. When a set of covariates are added to a model with a single explanatory variable, model-invariant estimation can be implemented using subject matter knowledge. More general theory with partial coefficients is applicable to analysis of large data sets. Applications are demonstrated with dietary health data from the United Nations.