cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11468109.v1
title: Cultivable marine fungi from the Arctic Archipelago of Svalbard and their antibacterial activity

description: During a research cruise in 2016, we isolated fungi from sediments, seawater, driftwood, fruiting bodies, and macroalgae using three different media to assess species richness and potential bioactivity of cultivable marine fungi in the High Arctic region. Ten stations from the Svalbard archipelago (73–80 °N, 18–31 °E) were investigated and 33 fungal isolates were obtained. These grouped into 22 operational taxonomic units (OTUs) using nuc rDNA internal transcribed spacer regions (ITS1-5.8S-ITS2 = ITS) with acut-off set at 98% similarity. The taxonomic analysis showed that 17 OTUs belonged to Ascomycota, one to Basidiomycota, two to Mucoromycota and two were fungal-like organisms. The nuc rDNA V1-V5 regions of 18S (18S) and D1-D3 regions of 28S (28S) were sequenced from representative isolates of each OTU for comparison to GenBank sequences. Isolates of Lulworthiales and Eurotiales were the most abundant, with seven isolates each. Among the 22 OTUs, nine represent potentially undescribed species based on low similarity to GenBank sequences and 10 isolates showed inhibitory activity against Gram-positive bacteria in an agar diffusion plug assay. These results show promise for the Arctic region as asource of novel marine fungi with the ability to produce bioactive secondary metabolites with antibacterial properties.
DOI: 10.6084/m9.figshare.12010983.v1
title: Dataset 1: Results from DESeq analysis

description: The read count table was first processed by dividing all counts with two, since mapping was performed as proper pairs (mapping of a forward and reverse read), this is referred to as the raw count table (see item A). The raw count table was normalized according to genome size for each microorganism, followed by total sum scaling. The resulting table is referred to as the count table (see item B and C). The microorganisms listed in the tables were aggregated to genus level. For the antimicrobial resistome analysis, raw read counts are provided for all genes divided by two (see item D) and normalized according to the total bacterial reads per sample (mapping to the databases: bacteria, bacteria_draft and HumanMicrobiome) as fragments per kilo base reference per million bacterial fragments (FPKM) (see item E). The FPKM table was also aggregated to resistance against antimicrobial classes (see item F), and the class-level information for each AMR-genes are available as item G.
DOI: 10.6084/m9.figshare.14672019.v1
title: cdg2018-bip-scz

description: GWAS summary statistics from the Psychiatric Genomics Consortium (PGC)
DOI: 10.6084/m9.figshare.16809541.v1
title: Supplementary Material for: Effect of Conventional Medical Therapy or Laparoscopic Sleeve Gastrectomy on Urinary Albumin in Japanese Subjects with Severe Obesity: An Observational Study

description: <b><i>Introduction:</i></b> In patients with severe obesity, albuminuria can be improved by both conventional medical therapy and bariatric surgery. The purpose of this study was to compare the impact of weight loss achieved through conventional medical therapy or laparoscopic sleeve gastrectomy (LSG) on albuminuria in Japanese subjects with severe obesity and identify the factors involved. <b><i>Methods:</i></b> We retrospectively evaluated the clinical characteristics including the urinary albumin/creatinine ratio (UACR) of 340 consecutive subjects with a body mass index ≥35 who received LSG (<i>n</i> = 242) or medical therapy (<i>n</i> = 98) between 2010 and 2018 and were followed for at least 12 months. <b><i>Results:</i></b> The baseline of the UACR was not different between the 2 groups. At the 12-month follow-up, total weight loss (TWL) and decreases in glycosylated hemoglobin (HbA1c) and log<sub>e</sub> UACR were greater in the LSG group than in the medical therapy group (body weight; −35.7 kg vs. −8.0 kg, <i>p</i> &lt; 0.001, HbA1c; −1.4% vs. −0.7%, <i>p</i> &lt; 0.001, log<sub>e</sub> UACR; −0.3 vs. 0.9, <i>p</i> &lt; 0.001). The rate of complete remission of diabetes was significantly higher in the LSG group than in the medical therapy group. At 12 and 36 months (<i>n</i> = 111 in the medical therapy group, <i>n</i> = 56 in the LSG group at 36 months), log<sub>e</sub> UACR increased in the medical therapy group, while it remained unchanged or decreased in the LSG group. In subjects with microalbuminuria and macroalbuminuria, changes in the log<sub>e</sub> UACR correlated with percent total body weight loss (%TWL) in both groups at 12 months. Percent TWL contributed independently to the change in the log<sub>e</sub> UACR, irrespective of whether LSG was performed. In receiver-operating characteristic analysis, a weight loss of 7.8% predicted a decrease in the UACR (∆UACR &lt;0 at 12 months). <b><i>Conclusion:</i></b> Our analysis suggests that albuminuria may increase over time if only medical therapy is continued. To improve albuminuria, weight loss may be more important than whether LSG is performed.
DOI: 10.6084/m9.figshare.21764129.v4
title: Data and code to reproduce "Thinning presence points does not improve species distribution model performance"

description:  This repository contain the data and code to reproduce the analyses in:<br>

Ten Caten, C., Dallas, T. "Thinning presence points does not improve species distribution model performance".<br>

This repository is structured in a way such that the analyses in the manuscript can be run from different startig points. For that reason, codes are labelled with numbers 0-6, such that code 0 is the first step needed to reproduce the entire analytical process used in our simulations whereas code 6 is mostly plotting/running analyses.<br>

In case the user decides to start from part 2, for example, the user can unzip the folder "2_Data", which contains all the data generated in parts 0-1 that is needed to run part 2. Similarly, to start from part 3, unzip the folder "3_Data" that has all the data generated in parts 0-2 needed to run part 3. The same idea is used for parts 4-5.<br>

An important detail is that, if the user decides to run the analyses from part 1 ("1_LandScapeAndSps.R"), they should avoid sourcing  part 0 ("0_SourceFunctions.R") as it is in the first line of code 1. Instead, they can run lines 1-119 to get what is needed to run part 1. Sourcing code 0 from part 1 will still work, but it will throw an error message that occurs because the object "LandScapesAndSps.RData" is needed to run the rest of code 0 (and generate some of the objects that are used in the later parts), but this object is only officially created in part 1. Otherwise, the codes can be run following the structure provided in the previous paragraph.
DOI: 10.6084/m9.figshare.26156683.v1
title: U-Pb geochronology and fission track thermochronology data for the paper entitled: "<b>Late Cretaceous to Oligocene source-to-sink system in Central Zealandia: implications for exhumation, paleogeography and Cenozoic Australia-Pacific plate boundary evolution" </b>published in the New Zealand Journal of Geology and Geophysics (2024) DOI:10.1080/00288306.2024.2376151

description: These data assist in a source-to-sink study in central New Zealand (Zealandia) aimed at linking Late Cretaceous to Oligocene sediments in Taranaki Basin and Oligocene sediments in the King Country Basin to their source, which we have found to be batholiths (Median Batholith and Karamea Batholith) and basement terranes (Takaka and Buller) in the northwest Nelson region. This linkage is enabled by zircon U-Pb ages. The zircon and apatite fission track data have been used together with zircon U-Pb ages to establish constraints on the exhumation of the batholiths and terranes. These data show that the basement units in the northwest Nelson region were being exhumed and eroded throughout the Late Cretaceous to Oligocene concurrent with sediment dispersal and accumulation in the surrounding basins. Double dating of zircon by fission track and U-Pb methods has been undertaken on selected samples and are illustrated in double dating plots. For each U-Pb and ZFT sample, radial plots are included in the dataset, both of minimum age and component ages, as well as probability density function plots.
DOI: 10.6084/m9.figshare.29150834.v1
title: <b>Genetic links between sex hormones and sarcoidosis</b>.

description: Supplementary data
DOI: 10.17632/7zf99hxxc9
title: Task-irrelevant affective prosody perception by children with high autistic traits under attentional loads: electroencephalographic and behavioural data

description: Impaired social-emotional reciprocity and verbal communication characterise Autism Spectrum Disorder (ASD). This dataset provides electroencephalographic (EEG) signals related to implicit emotional speech perception under low, intermediate, and high attentional demands. Demographic and behavioural data are also provided. Thirty-one children with high autistic traits (mean age: 10-year-old, SD: 1, 2 girls) and their parents or legal guardians participated in data collection. Assessments of autistic behaviours severity using the Autism Spectrum Rating Scales (ASRS, parent report) are provided. During the experiment, children listened to task-irrelevant affective prosodies while answering three visual tasks: neutral image viewing (low attentional load), one-target 4-disc Multiple Object Tracking (MOT; intermediate), one-target 8-disc MOT (high). EEG data recorded during all three tasks and tracking capacity (behavioural data) from MOT conditions are included in the dataset. Beforehand, children answered the Edinburgh Handedness Inventory, and resting-state EEG activity of children was recorded for 2 minutes with eyes open. Those data are also provided. The present dataset can be used to investigate the electrophysiological correlates of implicit emotion and speech perceptions and their interaction with attentional load and autistic traits severity. Besides, resting-state EEG data may be useful for a clinical characterisation of the autistic condition at rest. Finally, behavioural MOT data can be analysed to assess dynamic and selective attentional functions in children with high-autistic traits. 

Keywords
Electroencephalography, Multiple-Object Tracking, Selective Attention, Dynamic Attention, Autism Spectrum Disorder, Emotion Processing, Prosody
DOI: 10.17632/xb5mmtvz6j
title: data and result for the  ''CS-ALBP-HRC'' 

description: Based on the actual production scale, the data provided in this article are separated into large-scale and medium-scale data. Task processing times and task priority relationships are included in both forms of data.
DOI: 10.5281/zenodo.15567903
title: Library automation software study
DOI: 10.5281/zenodo.15567904
title: Library automation software study
DOI: 10.6084/m9.figshare.12462509.v4
title: JUPPId

description: <i>JUPPI</i> Dataset (<i>JUPPId</i>)
DOI: 10.6084/m9.figshare.12659327.v2
title: Agricultural land and fertilizer use are associated with increased snail habitat, snails, and human schistosomiasis

description: This is a dataset repository for the manuscript titled: "Agricultural land and fertilizer use are associated with increased snail habitat, snails, and human schistosomiasis"
DOI: 10.6084/m9.figshare.13003592.v1
title: Quijano et al 2020_Data.rar

description: Small scale fish trajectories
DOI: 10.6084/m9.figshare.24453880.v1
title: Number of adults to be covered by PC for strongyloidiasis at country level, with prevalence threshold set at 10% from Progress towards the implementation of control programmes for strongyloidiasis in endemic areas: estimation of number of adults in need of ivermectin for strongyloidiasis

description: The World Health Organization (WHO) has started a process to issue guidelines for the control of strongyloidiasis. The guidelines might recommend to implement preventive chemotherapy (PC) at community level (i.e. to all individuals above 5 years of age), over a defined prevalence threshold. We previously estimated the number of school-age children (SAC) who would need PC. Here we estimate the number of people above 15 years of age who might be included in PC for strongyloidiasis. Based on previous <i>Strongyloides</i> prevalence estimates and on countries' age distribution, we retrieved the number of adults in need of PC. We then subtracted the number of people already involved in ivermectin mass distribution for the elimination of onchocerciasis and lymphatic filariasis and people living in countries where <i>Loa loa</i> is endemic. The number of adults to be involved in PC was estimated from 994.2 (95% confidence interval [95% CI]: 571.6–1292.6), to 562.3 (95% CI: 303.1–790.1) million people, when the strongyloidiasis prevalence threshold for implementing PC was set to 10% and 20%, respectively. Estimates at country level are also provided.These estimates might help endemic countries wishing to implement PC for strongyloidiasis to allocate resources to include adults in addition to SAC in control programmes.This article is part of the theme issue ‘Theo Murphy meeting: Strongyloides: omics to worm-free populations’.
DOI: 10.6084/m9.figshare.25714014.v1
title: Fig_6

description: This data set belongs to the paper "CControlled pathways and sequential information processing in serially coupled mechanical hysterons" by J. Liu, M. Teunisse, G. Korovin, I. R. Vermaire, L. Jin, H. Bense and M. van Hecke, published in "Proceedings of the National Academy of Sciences of the United States of America". For more information on the methodology and techniques we refer to this article and the supplemental information belonging to the article.
DOI: 10.6084/m9.figshare.29104994.v2
title: Supplemental figure S1: Main facilities for lactating cows (A), type of maternity (B), and calf housing (C) , analyzed across different dairy production systems (LOW = 12.0 L/cow per day (7.4–14.5); INT = 18.0 L/cow per day (14.6–22.5); and UPP = 26.7 L/cow per day (22.6–32.0).

description: Main facilities for lactating cows (A), type of maternity (B), and calf housing (C) , analyzed across different dairy production systems (LOW = 12.0 L/cow per day (7.4–14.5); INT = 18.0 L/cow per day (14.6–22.5); and UPP = 26.7 L/cow per day (22.6–32.0).
DOI: 10.6084/m9.figshare.17134982.v1
title: Supplementary Material for: PREVENTION OF INCISIONAL HERNIA AFTER OPEN HEPATO-PANCREATO-BILIARY SURGERY: A SYSTEMATIC REVIEW

description: Introduction Most hepato-pancreato-biliary (HPB) procedures are still performed through open approach. Incisional hernia (IH) is one of the most common complications after open surgery. To date, published data on IH after HPB surgery are scarce, therefore the aim of this study was to assess the current evidence regarding incidence, risk factors, and prevention. Methods Medline/PubMed (1946-2020), EMBASE (1947-2020), and the Cochrane library (1995-2020)) were searched for studies on IH in open HPB surgery. Animal studies, editorials, letters, reviews, comments, short case series and liver transplant, laparoscopic or robotic procedures were excluded. The protocol was registered with PROSPERO (CRD42020163296). Results A total of 5 079 articles were retrieved. 8 studies were finally included for the analysis. The incidence of IH after HPB surgery ranges from 7.7% to 38.8%. The identified risk factors were body mass index, surgical site infection, ascites, Mercedes or reversed T incisions and previous IH. Prophylactic mesh might be safe and effective. Conclusions IH after open HPB surgery is still an important matter. Some of the risk factors are specific for the HPB operations and the incision type should be carefully considered. Randomised controlled trials are required to confirm the role of prophylactic mesh after HPB operations.
DOI: 10.17632/vxj8bkkfkg
title: Dataset of I-V characterization and EL imaging for accelerated testing of monofacial and bifacial PV cells

description: The introduced dataset provides I-V characteristics and Electroluminescent (EL) images of 20 single-cell laminates. The laminated photovoltaic (PV) cells represent 2 distinct technologies: monofacial and bifacial (PERC). Each single-cell laminate is I-V characterized in its reference state at five irradiation levels ranging from 185 W/m^2 to 925 W/m^2 using AAA class industrial Sun simulator and EL imaged at multiple current biases. Then, every laminate undergoes a series of accelerated degradation tests for one of the three degradation modes: Potential Induced Degradation (PID), interconnect failures and cracks. The measurements are repeated after every step of introducing/progressing respective degradation mode. The I-V characterization is performed by custom made I-V characterization tool measuring the I-V characteristic in I. and IV. quadrant.

The data are of interest to any researcher or industry expert that requires well documented changes of degraded monofacial and bifacial PV cells, which can be benchmarked against one another, since the degradation is introduced close to 1:1 among the different laminates. 

The data are well suited for applications like model verification and side-by-side comparison of degradation.
DOI: 10.17632/xgs4vs2b79
title: Supplementary Files for "Chemical Characterizations of Isomeric Flavonoid Glycosides and Other Constituents from Ficus deltoidea Jack"

description: The presented NMR and LC-PDA-MS processed spectra are supplementary files for "Chemical characterizations of isomeric flavonoid glycosides and other constituents from Ficus deltoidea Jack". These datasets were analyzed to elucidate 22 chemical constituents identified as gallocatechin (S1), afzelechin-4-8"-gallocatechin (S2), catechin (S3), afzelechin-4-8"-catechin (S4), afzelechin (S5), epicatechin (S6), hovetrichoside C (S7), 6,8-di-C-D-glucopyranosylapigenin (vicenin-2) (S8), afzelechin-4-8"-epiafzelechin (S9), epiafzelechin (S10), 6-C-β-D-xylopyranosyl-8-C-β-D-glucopyranosylapigenin (vicenin-1) (S11), orientin (S13), schaftoside (S14), 6-C-D-glucopyranosyl-8-C-D-xylopyranosylapigenin (vicenin-3) (S16), vitexin (S17), vitexin 2"-O-rhamnoside (S19), isovitexin 2"-O-rhamnoside (S20), 6,8-di-C-α-L-arabinopyranosylapigenin (S21), 6,8-di-C-D-xylopyranosylapigenin (S22), 6-C-L-arabinopyranosyl-8-C-D-xylopyranosylapigenin (S23), rhoifolin (S24) and cerberic acid A (S26). The LC-PDA-MS files contained the base peak chromatogram, photodiode array chromatogram, MS spectra, calculated molecular formula and UV spectra. The NMR files consisted of the proton, carbon, APT, DEPTQ, HSQC, COSY, HMBC, ROESY and TOCSY NMR spectra.
DOI: 10.6084/m9.figshare.19228977.v1
title: Data and codes for Hoven et al. (2022). Communications Biology

description: Contains all codes and data necessary to reproduce the results and figures reported in Hoven et al. (2022): Motivational signals disrupt metacognitive signals in the human ventromedial prefrontal cortex. Communications Biology<br>
DOI: 10.6084/m9.figshare.22803527.v1
title: Atlanta Crime Incidents 2015-2020.csv

description: Crime incident data from Atlanta, GA from 2015-2020
DOI: 10.17632/6xtgb5cx3z
title: Two Aggregated Datasets of Gamblers' Payment Transaction Records

description: These datasets represent payment transaction records for customers of a US based gambling payments provider. The data represent customer transactions between March 1, 2019 and February 29, 2020. There are 16 columns in the data, a description for each is provided in "Data dictionary.docx". The data are in aggregated form, where each row represents a unique customer. "Aggregated_online_casino.csv" contains data for 2,286 customers of a casino-focused Internet gambling brand. "Aggregated_online_sports.csv" contains data for 5,580 customers of a sports-focused Internet gambling brand. We performed cluster analysis on each dataset, and also performed validation by comparing the clusterings for each dataset. These analytic steps are provided in "validation R code.r". Further details of our study and analyses are available in our preregistration at https://osf.io/bncq9/.
DOI: 10.6084/m9.figshare.7667069.v1
title: Quality reports of the RRBS data after the quality trimming

description: The FastQC-reports of the 63 RRBS libraries after quality trimming. The plots follow the standard FasQC-format and include basic statistics, per base sequence quality, per tile sequence quality, per sequence quality scores, per base sequence content, per sequence GC content, per base N content, sequence length distribution, sequence duplication levels, overrepresented sequences and adapter content.
DOI: 10.17632/9j4hk7k9tb
title: Pre-computed orbit families dataset

description: Initial conditions include a state vector and period of each orbit in a periodic family in the Earth-Moon CR3BP system.
DOI: 10.17632/hzh8zmn77s
title: Probing the functional constraints of influenza A virus NEP by deep mutational scanning

description: Raw and unprocessed data from the three independent biological replicates are included, Related to Figure 3.
DOI: 10.17632/kvtxb5txb3
title: KMCLib: A general framework for lattice kinetic Monte Carlo (KMC) simulations

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract KMCLib is a general framework for lattice kinetic Monte Carlo (KMC) simulations. The program can handle simulations of the diffusion and reaction of millions of particles in one, two, or three dimensions, and is designed to be easily extended and customized by the user to allow for the development of complex custom KMC models for specific systems without having to modify the core functionality of the program. Analysis modules and on-the-fly elementary step diffusion rate calculations can be i... Title of program: KMCLib Catalogue Id: AESZ_v1_0 Nature of problem Atomic scale simulation of slowly evolving dynamics is a great challenge in many areas of computational materials science and catalysis. When the rare-events dynamics of interest is orders of magnitude slower than the typical atomic vibrational frequencies a straight-forward propagation of the equations of motions for the particles in the simulation can not reach time scales of relevance for modeling the slow dynamics. Versions of this program held in the CPC repository in Mendeley Data AESZ_v1_0; KMCLib; 10.1016/j.cpc.2014.04.017 AESZ_v1_1; KMCLib v1.1; 10.1016/j.cpc.2015.06.016
DOI: 10.17632/phnz2gg8mz
title: CONUNDrum: A program for orbital-free density functional theory calculations

description: We present a new code for energy minimization, structure relaxation and evaluation of bulk parameters in the framework of orbital-free density functional theory (OF-DFT). The implementation is based on solving the Euler–Lagrange equation on an equidistant real space grid on which density dependent variables and derivatives are computed. Some potential components are computed in Fourier space. The code is able to use semilocal and non-local kinetic energy functionals (KEF) as well as neural network based KEFs thus facilitating testing and development of emerging machine-learned KEFs. For semi-local and machine-learned KEFs the kinetic energy potentials are evaluated with real-space differentiation of the components, which are partial derivatives of the KE with respect to the electron density, its gradient and Laplacian.
DOI: 10.34894/gpu3mh
title: Daily prosocial actions during the COVID-19 pandemic contribute to giving behavior in adolescence_Study Information

description: Study information on the article 'Daily prosocial actions during the COVID-19 pandemic contribute to giving behavior in adolescence'
description: This entry is a one-file data package totaling 17.2 KB, containing a file in .docx format.If you use this dataset, please cite: Sweijen, Sophie; van de Groep, Suzanne; Green, Kayla; te Brinke, Lysanne; Buijzen, Moniek; N.H. de Leeuw, Rebecca; et al. (2021). Daily prosocial actions during the COVID-19 pandemic contribute to giving behavior in adolescence_Study Information. Erasmus University Rotterdam (EUR). Dataset. https://doi.org/10.25397/eur.14916483