cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20416599.v1
title: Socio-Economic Development of Asian Russia - datasets for Khabarovsk and Primorsky Krais

description: The datasets represent topographic description (cost and accessibility maps) of Khabarovsk and Primorsky Krais of the Russian Far East divided into unit areas with a 10x10 km grid in WGS84. The datasets are in MID/MIF formats to be processed in QGIS with use of self-written open source software. The datasets are used to model single or multiple socio-economic scenarios of regional spatial development and inter-regional economic cooperation.
DOI: 10.6084/m9.figshare.5127064.v1
title: Supplementary Material for: The Relationship Between Ultraviolet Light Exposure and Mortality in Dialysis Patients

description: <b><i>Background:</i></b> Emerging data suggest that reduced exposure to ultraviolet (UV) radiation is associated with increased mortality in the general population. To date, the association between UV exposure and mortality in dialysis patients has not been examined. <b><i>Methods:</i></b> We examined the association between UV index, a proxy of UV exposure, and all-cause mortality among 47,286 US dialysis patients (entry period 2001-2006, with follow-up through 2009) from a large national dialysis organization using multivariable Cox regression. The UV index was ascertained by linking individual patients' residential zip codes to National Oceanic and Atmospheric Administration data, and was categorized as low (0-&lt;3), moderate (3-&lt;5), moderate-high (5-&lt;6), high (6-&lt;7), and very-high (≥7). In secondary analyses, we examined the UV index-mortality association within subgroups of age (&lt;65 vs. ≥65 years old), sex, and race (white vs. non-white). <b><i>Results:</i></b> The study population's mean ± SD age was 60 ± 16 and included 46% women and 56% diabetics. Compared to patients residing in moderate-high UV index regions, those residing in high and very-high UV index regions had a lower mortality risk: adjusted HRs 0.84 (95% CI) 0.81-0.88 and 0.83 (95% CI) 0.75-0.91, respectively. A similar inverse association between UV index and mortality was observed across all subgroups, although there was more pronounced reduction in mortality among whites vs. non-whites. <b><i>Conclusion:</i></b> These data suggest that dialysis patients residing in higher UV index regions have lower all-cause mortality compared to those living in moderate-high UV regions. Further studies are needed to determine the mechanisms underlying the UV index-mortality association.
DOI: 10.6084/m9.figshare.11742660.v3
title: CloudCompare Depth Map color schemes

description: Here are some of the most used colour scheme used in ichnology to generate false-colour depth maps for in CloudCompare.<br>
DOI: 10.6084/m9.figshare.19207549.v1
title: A new hypothesis of eudromaeosaurian evolution: CT scans assist in testing and constructing morphological characters

description: Eudromaeosauria is a clade of derived dromaeosaurids that typifies the common perception of ‘raptor’ dinosaurs. The evolutionary history of this clade has been controversial due to conflicting views of taxonomic identity, and because, due to taphonomic bias, several species were diagnosed primarily or solely by the maxilla. The maxilla is therefore crucial in understanding the phylogenetic relationships within the clade. Morphometric characterization has been commonly applied to recognize and distinguish major dromaeosaurid clades. However, morphometrics mainly showed morphological convergence rather than phylogenetic relationships. This approach has made it difficult to get resolution of phylogenetic relationships among eudromaeosaurian taxa, often resulting in large polytomies or inconsistent placement of key species. To test previous character statements, computed tomography was used to analyze the maxillae of <i>Acheroraptor</i>, <i>Atrociraptor</i>, and <i>Deinonychus</i>, and compare them with other eudromaeosaurians from Asia and North America. Morphometric characters were examined, and regressions were used to look for allometric trends in maxillary dimensions and the relationship to topological landmarks within Eudromaeosauria and its outgroups. Characters were improved and implemented to better capture eudromaeosaurian morphological variation and better resolve their phylogenetic relationships. Phylogenetic analysis recovered three well-defined clades within Eudromaeosauria and corroborated occurrence data within the fossil record. <i>Acheroraptor</i> and <i>Atrociraptor</i> were recovered as derived members of Saurornitholestinae. <i>Deinonychus</i> is recovered as a basal eudromaeosaurian, sharing features with dromaeosaurines and saurornitholestines. These results challenge previous biogeographic hypotheses suggesting Asian and North American faunal interchange during the Late Cretaceous and support convergence of traits relating to snout dimensions and proportions.
DOI: 10.6084/m9.figshare.8153627.v2
title: Clinical information with sample submission numbers

description: Clinical information with SRA and GEO submission numbers
DOI: 10.6084/m9.figshare.14216099.v1
title: Supplementary Material for: Increasing Age and Nonliver Comorbidities in Patients with Chronic Hepatitis B in Taiwan: A Nationwide Population-Based Analysis

description: <b><i>Background:</i></b> Data from the USA suggest that chronic hepatitis B (CHB) patients have aged in the past decade. However, the burden of nonliver comorbidities has not been well characterized in Taiwan, where CHB is very prevalent. <b><i>Aim:</i></b> Our study examined this issue as it presented between 2001 and 2011 in Taiwan. <b><i>Methods:</i></b> This study identified adult patients (≥18 years) who were diagnosed with CHB in 2001, 2006, and 2011, from the Taiwan National Health Insurance Research Database (NHIRD). Changes in demographic characteristics, prevalence of nonliver comorbidities, and medication usage over the decade were examined. Non-CHB controls were adults without CHB diagnosis from the Longitudinal Health Insurance Database 2000 (LHID2000). <b><i>Results:</i></b> A total of 102,158, 252,809, and 338,200 eligible patients were identified in 2001, 2006, and 2011, respectively. The mean age significantly advanced from 45.4 to 52.3 years over the decade (<i>p</i> &lt; 0.001). The prevalence of comorbidities, including diabetes mellitus, hypertension, stroke, chronic kidney disease, and bone fracture, significantly increased between 2001 and 2011 (all <i>p</i> &lt; 0.001), as so were medication usage (all <i>p</i> &lt; 0.001). Moreover, within each study period, compared to non-CHB controls, CHB patients were also older and more likely to have metabolic and cardiovascular comorbidities (all <i>p</i> &lt; 0.001). In addition, the annual nonliver mortality in the CHB population significantly increased from 2001 to 2011. <b><i>Conclusions:</i></b> Over a decade, the CHB population in Taiwan has aged with a higher nonliver comorbidity burden and increasing nonliver mortality. These findings may provide information to care providers in the monitoring and management of CHB patients.
DOI: 10.6084/m9.figshare.17128685.v1
title: Supplementary Material for: Antithrombotic Management in Adult Kidney Transplantation – A European survey study

description: In kidney transplantation (KTx), renal graft thrombosis (RGT) is one of the main reasons for early graft loss. Although evidence-based guidance on prevention of RGT is lacking, thromboprophylaxis is widely used. The aim of this survey was to obtain a European view of the different thromboprophylactic strategies applied in KTx. An online 22-question survey, addressed to KTx professionals, was distributed by e-mail and via platforms of the European Society for Organ Transplantation. Seventy-five responses (21 countries, 51 centers) were received: 75% had over 10 years’ clinical experience, 64% were surgeons, 29% nephrologists and 4% urologists. A written antithrombotic management protocol was available in 75% of centers. In 8 (16%) of centers respondents contradicted each other regarding the availability of a written protocol. Thromboprophylaxis is preferred by 78% of respondents, independent of existing antithrombotic management protocols. Ninety-two percent of respondents indicated that an anticipated bleeding risk is the main reason to discontinue chronic antithrombotic therapy preoperatively. Intraoperatively, 32% of respondents administer unfractionated heparin (400 – 10.000 international units with a median of 5000) in selected cases. Despite an overall preference for perioperative thromboprophylaxis in KTx, there is a high variation within Europe regarding type, timing and dosage, most likely due to the paucity of high-quality studies. Further research is warranted in order to develop better guidelines.
DOI: 10.6084/m9.figshare.19122242.v1
title: 18 Informed Consent English.doc

description: Informed consent inserted
DOI: 10.6084/m9.figshare.24297559.v1
title: Supplementary Material for: Identifying genetic factors of polycystic ovary syndrome in women with epilepsy: a whole-genome sequencing study

description: Introduction: Women with epilepsy (WWE) are more likely to develop reproductive endocrine disorders, especially polycystic ovary syndrome (PCOS). This study aimed to explore the genetic factors of PCOS in WWE in hope of improving individual precision diagnosis and treatment. Methods: WWE registered at West China Hospital between January 2021 and October 2021 were enrolled in this study. Demographic and epilepsy-related characteristics were recorded and blood samples were collected for hormones, glucose metabolism testing and whole-genome sequencing. Results: After sample sequencing, quality control and variants selection, association analyses were performed. Pathway analysis was performed to identify involved biological pathways. The overall and PCOS ‘burden score’ of each individual were calculated to count the deleterious variants. A total of 95 WWE was included in this study and 19 patients were diagnosed with PCOS. WWE with PCOS showed a significantly different hormone profiles and a tendency of impaired glucose metabolism. The mostly associated genes were ZFYVE28, COL19A1, SIK3, ANKK1, PPIG, and REPIN1. The top 3 canonical pathways are adipogenesis pathway, Epoxysqualene Biosynthesis Signaling, and Glutamate Degradation Signaling. The most significant common variant was rs11914038 located in gene CELSR1 and rs651748 located in gene ZBTB16. In HGC prioritizations, ITGA9, PNPLA2, and DAB2 are the top 3 genes having the shortest distance to known PCOS genes. Conclusion: Genetic factors involved in the abnormal regulation of glucose and insulin metabolism are likely to be associated with the comorbidity of PCOS in WWE. Interventions targeting these processes should be given more priority in clinical practice.
DOI: 10.6084/m9.figshare.18515141.v2
title: An Empirical Evaluation of GitHub Copilot’s Code Suggestions

description: Artifact accompanying MSR 2022 paper titled "An Empirical Evaluation of GitHub Copilot’s Code Suggestions" by Nhan Nguyen and Sarah Nadi
DOI: 10.6084/m9.figshare.27162165.v3
title: EMI

description: Hydrogels, three-dimensional polymeric networks capable of absorbing and retaining significant amounts of aqueous solution, offer a promising platform for controlled release of desired compounds. In this study, we explored the effects of urea delivery through galactoxyloglucan-sodium alginate hydrogels on the phenotypic and metabolic responses of Brassica juncea, a vital oilseed and vegetable crop. The experiments were conducted with four treatments: control (without hydrogel beads and urea), direct urea supplementation (U), hydrogel beads with urea (HBWU), and hydrogel beads without urea (HBWOU). Our findings revealed that HBWU-treated plants exhibited commendable plant growth with significantly higher chlorophyll content (11.06 mg/0.1g) compared to the control (3.67 mg/0.1g) and U-treated group (6.41 mg/0.1g). Metabolic analysis identified 17 major intra-cellular metabolites involved in nitrogen metabolism. HBWU treatment significantly boosted nitrogen assimilation in plants, as evidenced by the upregulation of 9 metabolites. Furthermore, a proposed schematic diagram illustrates the HBWU induced-metabolic pathways and nitrogen metabolism in B. juncea. These findings demonstrate the potential of hydrogel-based controlled-release systems to enhance plant growth and nitrogen assimilation.
DOI: 10.6084/m9.figshare.13686292.v1
title: URBAN_EC_COVID19_DATASET

description: 1) Eddy Covariance yearly datasets (one file per year) at half-hour resolution for each measuring station involved in the study. Number of years/datasets varies among stations according to actual data availability. Variables lists: TIMESTAMP: timestamp referred at the beginning of half-hour [YYYYmmddHHMM]FC: CO2 flux, µmol m-2 s-1]FC_SSITC_TEST: quality flag for gas flux [#] 0=good quality, 1=medium quality, 2=bad qualityWS: wind speed [ms-1]WD: wind direction [°]FETCH_70: along-wind distance providing 70% (cumulative) contribution to turbulent fluxes [m]T_SONIC: sonic temperature [°C]TA: air temperature [°C] <br>Flux records with FC_SSITC_TEST = 2 (when present) should be discarded.<br>2) CarbonMonitor buildings [Gg CO2 day-1] and road traffic [Mg CO2] daily emissions for each measuring station for 2019 and 2020.<br>
DOI: 10.6084/m9.figshare.27933381.v1
title: <b>Study of Aichi virus in children with Acute Gastroenteritis Cross-Sectional Study</b>

description: <b>Study of Aichi virus in children with Acute Gastroenteritis Cross-Sectional Study</b>
DOI: 10.6084/m9.figshare.14481417.v2
title: Mechanomics RT-DC Validation - TGBC CAV1 KD ONTARGET

description: Entry is a part of <b>Mechanomics</b> collection (10.6084/m9.figshare.c.5399826) that contains materials supporting findings presented in the following manuscript:<i>Urbanska, M., Ge, Y.</i> et al.,<br><b><i>De novo identification of universal cell mechanics gene signatures</i></b>BiorXiv: https://doi.org/10.1101/2021.04.26.441418<i>;</i><i> </i><i>first published:</i><i> </i>27th April 2021<i>, last updated:</i><i> </i>4th Nov 2024<br>eLife: https://doi.org/10.7554/eLife.87930<i>; first published:</i><i> </i>23rd March 2023<i>, last updated:</i><i> </i>27th Dec 2024<br>This dataset contains mechanical measurement of CAV1 knock-down in TGBC18TKB (TGBC) adenocarcinoma cell line performed using ON TARGETplus siRNA from Dharmacon.Measurements were performed using real-time deformability cytometry (RT-DC).<b>_rtdc.zip</b> - contains data acquired during the measurments in '*.rtdc' format<br><b>_tsv.zip</b> - contains extended data in a '*.tsv' format<br><b>_glmm.zip</b> - contains result summaries of statistical analysis comparing Young's moduli of the different cell types using generalised linear mixed effects models
DOI: 10.6084/m9.figshare.25991356.v1
title: Supplementary Material for: A Systematic Review and Meta-analysis on the prevalence of mild cognitive impairment and dementia in Mexico

description: Introduction: Age remains one of the major risk factors for the onset of mild cognitive impairment (MCI) and dementia. Studies on the prevalence of these conditions in Mexico used different methods, tools, and population with different health status. All these heterogeneous results may be a problem in identifying the true prevalence of MCI and dementia in Mexico. To our knowledge, there is not a systematic review available that presents essential figures on the prevalence of these conditions in Mexico. Therefore, we intend to access the maximum number of reports published on the topic and determine the prevalence of MCI and dementia in Mexican older adults. Methods: A systematic review using PubMed, Cochrane, Research Gate, Lilacs, and Scielo databases. Meta-analysis of the prevalence of MCI and dementia was analyzed using a random-effects model and presented in a forest plot among cross-sectional, epidemiological and pooled studies. Results: Sixteen articles were included. The overall prevalence of MCI of 18% (95% CI 0.10–0.27) was estimated from pooled information from 12 selected studies, in women 21% (95% CI 0.08–0.38), and in men 18% (95% CI 0.06–0.33). The overall prevalence of dementia of 10% (95% CI 0.06–0.14) was estimated from pooled information from 9 selected studies, in women 14% (95% CI 0.05–0.25), and in men 10% (95% CI 0.04–0.17). Conclusion: Mexican older individuals have a similar prevalence of dementia and MCI as reported by international data; nevertheless, the prevalence is higher than some Latin American Countries. Mexico has particular issues that must be resolved, such as, a lack of research in the southern regions of the country and the high incidence of comorbidities.
DOI: 10.6084/m9.figshare.28484948.v1
title: Landscape anthropization drives composition and diversity of butterfly communities at a regional scale - Bongibault <i>et al., </i>2025 - EcoEvoRxiv

description: Featured here:Community index dataset for 1 km²spr_1km² = alpha index datasetCWM_1km² = alpha functional index datasetsDatasets for beta taxonomic (T), functional (F) and phylogenetic (P) diversity. The same applies to turnover and nestedness.R script to create community index datasetR script to perform analysis on community index datasetSpecies occurrence data, which enable aggregation at community level, are not available in order to respect the private property of occurrence data.<br>
DOI: 10.6084/m9.figshare.28639550
title: SPSS Data: The efficiency of traditional, double pipe, modified stove, and combination of modified stove and double pipe distillation.

description: The efficiency of traditional, double pipe, modified stove, and combination of modified stove and double pipe distillation
DOI: 10.6084/m9.figshare.28639550.v3
title: SPSS Data: The efficiency of traditional, double pipe, modified stove, and combination of modified stove and double pipe distillation.

description: The efficiency of traditional, double pipe, modified stove, and combination of modified stove and double pipe distillation
DOI: 10.6084/m9.figshare.28639550.v2
title: SPSS Data: The efficiency of traditional, double pipe, modified stove, and combination of modified stove and double pipe distillation.

description: The efficiency of traditional, double pipe, modified stove, and combination of modified stove and double pipe distillation
DOI: 10.6084/m9.figshare.5128597.v1
title: Supplementary Material for: Race, Mineral Homeostasis and Mortality in Patients with End-Stage Renal Disease on Dialysis

description: <b><i>Background:</i></b> Abnormalities in mineral homeostasis are ubiquitous in patients on dialysis, and influenced by race. In this study, we determine the race-specific relationship between mineral parameters and mortality in patients initiating hemodialysis. <b><i>Methods:</i></b> We measured the levels of fibroblast growth factor 23 (FGF23) and 25-hydroxyvitamin D (25 D) in 184 African American and 327 non-African American hemodialysis patients who enrolled between 1995 and 1998 in the Choices for Healthy Outcomes in Caring for ESRD Study. Serum calcium, phosphorus, parathyroid hormone (PTH) and total alkaline phosphatase levels were averaged from clinical measurements during the first 4.5 months of dialysis. We evaluated the associated prospective risk of mortality using multivariable Cox proportional hazards models stratified by race. <b><i>Results:</i></b> PTH and total alkaline phosphatase levels were higher, whereas calcium, phosphorus, FGF23 and 25 D levels were lower in African Americans compared to those of non-African Americans. Higher serum phosphorus and FGF23 levels were associated with greater mortality risk overall; however, phosphorus was only associated with risk among African Americans (HR 5.38, 95% CI 2.14-13.55 for quartile 4 vs. 1), but not among non-African Americans (p-interaction = 0.04). FGF23 was associated with mortality in both groups, but more strongly in African Americans (HR 3.91, 95% CI 1.74-8.82 for quartiles 4 vs. 1; p-interaction = 0.09). Serum calcium, PTH, and 25 D levels were not consistently associated with mortality. The lowest and highest quartiles of total alkaline phosphatase were associated with higher mortality risk, but this did not differ by race (p-interaction = 0.97). <b><i>Conclusions:</i></b> Aberrant phosphorus homeostasis, reflected by higher phosphorus and FGF23, may be a risk factor for mortality in patients initiating hemodialysis, particularly among African Americans.
DOI: 10.17633/rd.brunel.8053079.v1
title: Portable compressed binary tCONCOORD trajectory file - 2BDW A

description: tCONCOORD trajectory
DOI: 10.6084/m9.figshare.26359675.v2
title: Data for "A Finite Element Analysis Model for Magnetomotive Ultrasound Elastometry Magnet Design with Experimental Validation"

description: MPH FilesThe four included COMSOL Multiphysics MPH files were used to obtain all simulation results in this work. To run these files, you need COMSOL Multiphysics v. 6.1 with the following packages installed:AC/DC ModuleCAD Import Module (Simulation 3 only)Design Module (Simulation 4 only)List of files:FEA1_PermMagValidation.mph used for validation in Sec. 2.1.1FEA2_SolenoidValidation.mph used for validation in Sec. 2.1.2FEA3_ExisitingSystemWithPermMags.mph used for validation in Sec. 2.1.3 and methods in Sec. 2.2FEA4_FourCoils.mph used for methods in Sec. 2.3Data Used to Generate FiguresAll data used to generate figures except for the RF data (see below) is provided in AllData.xlsx. When opened in Microsoft Excel, each tab at the bottom corresponds to the relevant figure.RF FilesRaw beamformed RF data files from the Ultrasonix SonixTouch scanner are also included. These constitute the validation data presented in the manuscript. There are three datasets for which the permanent magnets were present ("PermMag") and three more for which the permanent magnets were not present ("NoPermMag"). Each dataset is composed of a "bon" and a "boff" file. These refer to whether the solenoid electromagnets were turned on or off, respectively.These files may be read via the RPread2.m MATLAB function supplied by Ultrasonix Medical Corporation. A simple script demonstrating the use of this function is also provided: RFCallerCode.mContact InfoQuestions? Please feel to reach out to Ben Levy:Current email address: belevy1@davidson.eduIf no longer at Davidson: https://benphysics.com/cv/<br><br>
DOI: 10.6084/m9.figshare.21550447.v1
title: Potential prognostic markers of retained placenta in dairy cows identified by plasma metabolomics coupled with clinical laboratory indicators

description: The complex etiopathology of retained placenta (RP) and hazards associated with it has made it crucial for researchers and clinical veterinarians to study pathogenesis, early-warning diagnosis, and treatment. This study aimed to screen the potential prognostic markers of RP in dairy cows using plasma metabolomics coupled with clinical laboratory indicators. Blood samples were collected from 260 dairy cows at 21, 14, 7, and 0 days before parturition and 7, 14, and 21 days after parturition. Consequently, 10 healthy cows and 10 cows with RP with similar parity, body condition score, and age were included in the study. The changes in clinical laboratory indicators of the enrolled cows from 21 before parturition to 21 days after parturition were assessed. After initial overview of the multivariate statistical data using PCA analysis, the data were subjected to orthogonal partial least-squares discriminant analysis. Compared with cows with RP at 7 days before parturition, the levels of endothelin and 6-keto-prostaglandin F1α were increased in healthy cows, while the level of estradiol and progesterone decreased. Adenine dinucleotide phosphate, hypoxanthine, guanine dinucleotide phosphate, inosine monophosphate, and L-arginine were revealed as potential prognostic markers of cows with RP at 7 days before parturition involved in the regulation of taste transduction, purine and glutathione metabolism, and autophagy. The best period for the early-warning diagnosis of RP in dairy cows is 7 days before parturition, and purine metabolism and autophagy may play a vital role in the occurrence and development of RP in dairy cows.