cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16993442
title: Dataset from the project "Migration Crisis in Latin America – coping and adaptation strategies of Venezuelan migrants and their families and the risk of global migration crisis [MICLACAS]

description: This dataset is created from the survey conducted as part of a research project, entitled"Migration Crisis in Latin America – coping and adaptation strategies of Venezuelan migrantsand their families and the risk of global migration crisis [MICLACAS]". funded by the NationalScience Centre in Poland (NCN OPUS no. 2021/41/B/HS4/01680).

The fieldwork was conducted between 25 April and 15 May 2023 using the face-to-facecomputer-assisted personal interview (CAPI) method. The survey was conducted in all districtswithin the city of Lima, including Lima Norte, Lima Este, Lima Sur, Lima Centro, LimaModerna, and Callao. The sample included respondents from 37 districts within this area. Intotal 305 Venezuelans residing in Peru.

Please cite: Stonawski, M., Brzozowski, J., Górska, K., Olter-Castillo, A. and K. Sobczak-Szelc, 2023, Dataset from the project “Migration Crisis in Latin America – coping andadaptation strategies of Venezuelan migrants and their families and the risk of global migrationcrisis [MICLACAS]”, Center for Advanced Studies of Population and Religion (CASPAR),Krakow University of Economics, Krakow.
DOI: 10.5281/zenodo.16993443
title: Dataset from the project "Migration Crisis in Latin America – coping and adaptation strategies of Venezuelan migrants and their families and the risk of global migration crisis [MICLACAS]

description: This dataset is created from the survey conducted as part of a research project, entitled"Migration Crisis in Latin America – coping and adaptation strategies of Venezuelan migrantsand their families and the risk of global migration crisis [MICLACAS]". funded by the NationalScience Centre in Poland (NCN OPUS no. 2021/41/B/HS4/01680).

The fieldwork was conducted between 25 April and 15 May 2023 using the face-to-facecomputer-assisted personal interview (CAPI) method. The survey was conducted in all districtswithin the city of Lima, including Lima Norte, Lima Este, Lima Sur, Lima Centro, LimaModerna, and Callao. The sample included respondents from 37 districts within this area. Intotal 305 Venezuelans residing in Peru.

Please cite: Stonawski, M., Brzozowski, J., Górska, K., Olter-Castillo, A. and K. Sobczak-Szelc, 2023, Dataset from the project “Migration Crisis in Latin America – coping andadaptation strategies of Venezuelan migrants and their families and the risk of global migrationcrisis [MICLACAS]”, Center for Advanced Studies of Population and Religion (CASPAR),Krakow University of Economics, Krakow.
DOI: 10.5281/zenodo.15672439
title: Application of digital twins to extend the emission data of naturally ventilated dairy cattle barns

description: Description

The dataset consists of simulation files (.sim), the geometries used in the simulations (.stl), and result summaries in Excel sheets (.xlsx) and as figures and plots (.png). Moreover, a script for usage in R is added (.txt)

Using measurement data from the EmiDaT project [1], digital twins of three naturally ventilated cattle barns (barn I, barn II, barn III) were developed and validated. Barn I featured a slatted floor with a manure pit underneath, barn II had a slatted floor with external manure storage, and barn III had a solid floor with manure also stored externally.

The boundary conditions used for the simulations can be found on the first sheet of the respective Excel files, and the results of the validation simulations are on the second sheet. After successful validation, simulations were carried out for events that were not covered by the measurement periods of the EmiDaT data. For this purpose, weather data from nearby measurement stations operated by the German Weather Service were evaluated. The boundary conditions for these simulations are provided on the third sheet of the Excel file, and the corresponding results are on the fourth sheet. The statistical evaluation can be reproduced by using the R-script. Solution data and simulation plots are given to allow for transparency and reproductivity of the results.

This approach demonstrated that simulations can extend the data basis beyond the available measurement data. This can lead to improved estimates of annual emission behavior and better extrapolation of emission factors.

References

 

1.     KTBL. Ermittlung von Emissionsdaten für die Beurteilung von Umweltwirkungen der Nutztierhaltung (EmiDaT): Abschlussbericht, Darmstadt, 2024.
DOI: 10.5281/zenodo.16881506
title: Application of digital twins to extend the emission data of naturally ventilated dairy cattle barns

description: Description

The dataset consists of simulation files (.sim), the geometries used in the simulations (.stl), and result summaries in Excel sheets (.xlsx) and as figures and plots (.png). Moreover, a script for usage in R is added (.txt)

Using measurement data from the EmiDaT project [1], digital twins of three naturally ventilated cattle barns (barn I, barn II, barn III) were developed and validated. Barn I featured a slatted floor with a manure pit underneath, barn II had a slatted floor with external manure storage, and barn III had a solid floor with manure also stored externally.

The boundary conditions used for the simulations can be found on the first sheet of the respective Excel files, and the results of the validation simulations are on the second sheet. After successful validation, simulations were carried out for events that were not covered by the measurement periods of the EmiDaT data. For this purpose, weather data from nearby measurement stations operated by the German Weather Service were evaluated. The boundary conditions for these simulations are provided on the third sheet of the Excel file, and the corresponding results are on the fourth sheet. The statistical evaluation can be reproduced by using the R-script. Solution data and simulation plots are given to allow for transparency and reproductivity of the results.

This approach demonstrated that simulations can extend the data basis beyond the available measurement data. This can lead to improved estimates of annual emission behavior and better extrapolation of emission factors.

References

 

1.     KTBL. Ermittlung von Emissionsdaten für die Beurteilung von Umweltwirkungen der Nutztierhaltung (EmiDaT): Abschlussbericht, Darmstadt, 2024.
DOI: 10.22002/bezns-csj06
title: Vibrio delta-CheA1

description: Vibrio cholerae strain deleted for CheA1
description: <strong>Tilt Series Date:</strong> 2014-03-04</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O1 biovar El Tor</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Ikuro Kawagishi</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grew in LB 24 hours at 30C; diluted 150 µL into 2 mL Ca-HEPES buffer and grew 16 hours at 30C</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-03-04-1/rawdata/</p>deltaA1VibrioC0001.mrc,  Tilt Series (Pixel Size 0.33 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-03-04-1/rawdata/deltaA1VibrioC0001.mrc"
        > <i class="download icon"></i> Download </a></p>

        deltaA1VibrioC0001_full.rec,  Reconstruction (Pixel Size 1.32 nm), 688.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-03-04-1/3dimage_39617/deltaA1VibrioC0001_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/42yar-f7069
title: HeLa

description: Looking for midbodies
description: <strong>Tilt Series Date:</strong> 2014-01-05</p>
<strong>Data Taken By:</strong> Rasika Ramdasi</p>
<strong>Species / Specimen:</strong> HeLa cells</p>
<strong>Strain:</strong> ATCC</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSF tomo</p>
<strong>Collaborators and Roles:</strong> with Doug Mckay</p>
<strong>Sample Preparation:</strong> HeLa cells+siRNA NUP153 + Thymidine. Freeze after 14 hours of thymidine release.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2014-01-05-22/rawdata/</p>30006.mrc,  Tilt Series (Pixel Size 0.6 nm), 861.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2014-01-05-22/rawdata/30006.mrc"
        > <i class="download icon"></i> Download </a></p>

        30006_full.rec,  Reconstruction (Pixel Size 2.4 nm), 156.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2014-01-05-22/3dimage_50387/30006_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/cwvm1-0c791
title: Agro VirB8-GFP

description: Raw data files of Agro VirB8-GFP
description: <strong>Tilt Series Date:</strong> 2013-07-08</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown for induction of T-pili at 19C</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-08-11/rawdata/</p>VirB8_Titan0011.mrc,  Tilt Series (Pixel Size 0.42 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-08-11/rawdata/VirB8_Titan0011.mrc"
        > <i class="download icon"></i> Download </a></p>

        VirB8_Titan0011_full.rec,  Reconstruction (Pixel Size 1.68 nm), 516.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-08-11/3dimage_28130/VirB8_Titan0011_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/5vna5-h8c68
title: Alongum

description: Alongum_periplasmiclayers
description: <strong>Tilt Series Date:</strong> 2012-05-20</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-30.0°, 30.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> WesleyChen helped remove layers</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulation media</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-84/rawdata/</p>AlongProtK0001.mrc,  Tilt Series (Pixel Size 0.95 nm), 677.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-84/rawdata/AlongProtK0001.mrc"
        > <i class="download icon"></i> Download </a></p>

        AlongProtK0001_full.rec,  Reconstruction (Pixel Size 1.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-84/3dimage_56885/AlongProtK0001_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.6gjyda
title: Occurrence Download

description: A dataset containing 45844718 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 45844718 records from 15290 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007081-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29246444
title: Supplementary Material for: Primary aquagenic pruritus successfully treated by β-alanine: A case report.

description: Aquagenic pruritus is a chronic debilitating itchy skin condition triggered by water exposure with limited treatment options. Here we present a case of primary aquagenic pruritus in an adult male who was successfully treated with β-alanine. Treatment efficacy was maintained at 20-weeks follow-up. This study includes a discussion of the pharmacodynamics of β-alanine and provides an insight into the pathophysiology of aquagenic pruritus. This study adds to the body of evidence supporting a role for β-alanine as an efficient and safe treatment option in patients with aquagenic pruritus.
DOI: 10.6084/m9.figshare.29246444.v1
title: Supplementary Material for: Primary aquagenic pruritus successfully treated by β-alanine: A case report.

description: Aquagenic pruritus is a chronic debilitating itchy skin condition triggered by water exposure with limited treatment options. Here we present a case of primary aquagenic pruritus in an adult male who was successfully treated with β-alanine. Treatment efficacy was maintained at 20-weeks follow-up. This study includes a discussion of the pharmacodynamics of β-alanine and provides an insight into the pathophysiology of aquagenic pruritus. This study adds to the body of evidence supporting a role for β-alanine as an efficient and safe treatment option in patients with aquagenic pruritus.
DOI: 10.15468/dl.yn2cf3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudobarbus verloreni Chakona, Swartz & Skelton, 2014",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.628 -23.023,35.6007 -22.9702,35.6007 -23.165,35.628 -23.023))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022492-250525065834625/datasets/export for details.
DOI: 10.22002/qce6y-ar251
title: BacillusSubtilis_328_4hr

description: Bacillus subtitles strain 328 overexpressing ymdB.
description: <strong>Tilt Series Date:</strong> 2020-02-26</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Bacillus subtilis</p>
<strong>Strain:</strong> AB328, ΔponA ΔymdB amyE::ymdB Δhag</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 19500x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Samples were prepared with Ritesh and Amit from Ilan Rosenshine and Sigal ben Yehuda labs at . the Hebrew university. See tomograms mka2020-02-08-x.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Samples were prepared as mentioned in Bacillus subtitles tomograms taken on 8th of February . 2020.</p>
<strong>Sample Preparation:</strong> Samples were prepared as mentioned in Bacillus subtitles tomograms taken on 8th of February . 2020. See tomograms mka2020-02-08-x.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-02-26-81/rawdata/</p>Bsubtilis_328_081.mrc,  Tilt Series (Pixel Size 0.449 nm), 1.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-02-26-81/rawdata/Bsubtilis_328_081.mrc"
        > <i class="download icon"></i> Download </a></p>

        Bsubtilis_328_081_full.rec,  Reconstruction (Pixel Size 1.796 nm), 737.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-02-26-81/3dimage_111890/Bsubtilis_328_081_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/heph0-das32
title: Hpylori_dFliF_FISE

description: These are H_pylori cells that are lacking FliP protein. In these cells, FliF protein was knocked out  .  to examine its relation to the hat-like complex.
description: <strong>Tilt Series Date:</strong> 2020-10-08</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Helicobacter pylori</p>
<strong>Strain:</strong> 26695</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -8.0 μm,  magnification: 19500x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> The cells were prepared and sent by Carrie Schaffer from the university of Kentucky. The cells were grown at 37C with 5% CO2 on sheep blood agar plates for 2 days from a -80C. No growth was seen . on the plates after 24 hr therefore the plates were kept in the . incubator for another 24Hr.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The samples were prepared with Vitrobot IV. Blotting conditions were either: blot force 6, blot . time 3, drain time 1 OR blot force -3, blot time 4, drain time 1, 100%  humidity. Cu grids. 10 nm . gold</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-10-08-231/rawdata/</p>Hpylori_DFliF_FISE_225.mrc,  Tilt Series (Pixel Size 0.452 nm), 1.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-10-08-231/rawdata/Hpylori_DFliF_FISE_225.mrc"
        > <i class="download icon"></i> Download </a></p>

        Hpylori_DFliF_FISE_225_full.rec,  Reconstruction (Pixel Size 1.808 nm), 737.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-10-08-231/3dimage_113945/Hpylori_DFliF_FISE_225_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/nhjhw-rhw56
title: JV9082_Janelia42k

description: DotF-sfGFP fusion
description: <strong>Tilt Series Date:</strong> 2018-08-29</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-54.0°, 54.0°), step: 3.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -7.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Joseph P. Vogel, Washington University School of Medicine. Data collected and processed by Debnath Ghosal. Janelia Krios.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in AYE liquid culture with following supplements: ferric nitrate, cysteine hydrochloride and thymidine.</p>
<strong>Sample Preparation:</strong> 6 grids were frozen for the JV9082 strain (2x concentrated culture); Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 4.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-29-162/rawdata/</p>JV9082_201808290169.mrc,  Tilt Series (Pixel Size 0.26 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-29-162/rawdata/JV9082_201808290169.mrc"
        > <i class="download icon"></i> Download </a></p>

        JV9082_201808290169_full.rec,  Reconstruction (Pixel Size 1.04 nm), 445.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>