cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/g7csq4
title: Réseau Loup - Lynx ONCFS - Lynx 1998 présence Régulière Mailles 10km Réseau Loup-Lynx ONCFS

description: Cartographie de synthèse de la présence détectée du lynx en France métropolitaine par un réseau de correspondants départementaux multipartenaire, formé et piloté par l'ONCFS sur le plan scientifique et technique et géré administrativement au niveau local par les DDT. Ce jeu de donnée ventile la présence de l'espèce en maille européenne 10 km (LAEA) de présence dite occasionnelle vs régulière de l'espèce, sur la base de la récurrence spatiale et la quantité d'indices ou constats d'attaques validés au cours de l'a dernière biennale chevauchante (ex: données recueillies entre le 01/04/2012 et le 31/03/2015 pour l'exercice 2015). Ce jeu de donnée correspond à la présence regulière de l'espèce. Les cartographies correspondant aux mailles européennes peuvent être trouvées sur le site de l'ONCFS http://www.oncfs.gouv.fr/Cartographie-ru4/Le-portail-cartographique-de-donnees-ar291
DOI: 10.15468/rcqluh
title: Réseau Loup - Lynx ONCFS - Lynx 2000 présence Régulière Mailles 10km Réseau Loup-Lynx ONCFS

description: Cartographie de synthèse de la présence détectée du lynx en France métropolitaine par un réseau de correspondants départementaux multipartenaire, formé et piloté par l'ONCFS sur le plan scientifique et technique et géré administrativement au niveau local par les DDT. Ce jeu de donnée ventile la présence de l'espèce en maille européenne 10 km (LAEA) de présence dite occasionnelle vs régulière de l'espèce, sur la base de la récurrence spatiale et la quantité d'indices ou constats d'attaques validés au cours de l'a dernière biennale chevauchante (ex: données recueillies entre le 01/04/2012 et le 31/03/2015 pour l'exercice 2015). Les cartographies correspondant aux mailles européennes peuvent être trouvées sur le site de l'ONCFS http://www.oncfs.gouv.fr/Cartographie-ru4/Le-portail-cartographique-de-donnees-ar291
DOI: 10.5281/zenodo.10715199
title: THA 57 Test mzML
DOI: 10.5281/zenodo.10715200
title: THA 57 Test mzML
DOI: 10.34943/6795f67e-1c0c-40d1-9db4-38d011e0672f
title: Burrard Inlet Junction Box Deployed 2024-02-06

description: The ONC Mini Junction Box 006 was deployed on 2024-02-06 at Burrard Inlet. Burrard Inlet is a coastal fjord in southwestern British Columbia. This device is a Junction Box. Junction Boxes supply power and communications to deployed instruments. Junction boxes have a number of serial and ethernet ports, including 400V ethernet ports that enable connections to other junction boxes and high-voltage instruments. Junction boxes can convert high voltages to lower voltages (15V, 24V or 48V) required by many instruments. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.6084/m9.figshare.9877682
title: Additional file 3 of A novel protein descriptor for the prediction of drug binding sites

description: Protein list for the experiment on sc-PDB using various methods. This file contains randomly selected proteins for the experiment with various methods. They are used in the 5-fold cross-validation experiments. A total of 5000 proteins were randomly selected from the sc-PDB database are used in the experiment, with an average of 1000 proteins per fold. (CSV 68.4 kb)
DOI: 10.6084/m9.figshare.9877682.v1
title: Additional file 3 of A novel protein descriptor for the prediction of drug binding sites

description: Protein list for the experiment on sc-PDB using various methods. This file contains randomly selected proteins for the experiment with various methods. They are used in the 5-fold cross-validation experiments. A total of 5000 proteins were randomly selected from the sc-PDB database are used in the experiment, with an average of 1000 proteins per fold. (CSV 68.4 kb)
DOI: 10.6084/m9.figshare.9877733
title: Additional file 1: of Cancer-associated fibroblast-derived Gremlin 1 promotes breast cancer progression

description: Table S1. Quantitative real-time PCR Primers. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.9877733.v1
title: Additional file 1: of Cancer-associated fibroblast-derived Gremlin 1 promotes breast cancer progression

description: Table S1. Quantitative real-time PCR Primers. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.25295551
title: This dataset provides data files to accompany the article The DNA methylation-driven gene FAM3D promotes colorectal cancer growth via the ATF4-SESN2-mTORC1 pathway

description: This data contains RNA-seq sequencing data of the colorectal cancer cell line LoVo, including 3 FAM3D gene knockout LoVo cell lines and 3 negative control LoVo cell lines.<br>
DOI: 10.6084/m9.figshare.25295551.v1
title: This dataset provides data files to accompany the article The DNA methylation-driven gene FAM3D promotes colorectal cancer growth via the ATF4-SESN2-mTORC1 pathway

description: This data contains RNA-seq sequencing data of the colorectal cancer cell line LoVo, including 3 FAM3D gene knockout LoVo cell lines and 3 negative control LoVo cell lines.<br>
DOI: 10.24377/ljmu.d.00000176
title: №5 – Olfactory Workshops for UK Prisons with Mike O'Shaughnessy

description: Perfume Stories: Alchemy and Essence. This is an innovative research project that employs a multi-sensory approach to learning in Art and Design. This unique methodology aims to facilitate learning and aid in the rehabilitation of prisoners at His Majesty’s Prison in the UK.

Perfume Stories are a series of sensory and storytelling workshops based around Perfume. The participants develop critical learning skills by responding to a series of multi-sensory tasks – writing down and telling their own stories through narratives in poetry, spoken word and image making.

This project began in 2021 when it was installed as part of the Tate Exchange Programme at Liverpool Tate. It was included In the Arts Council funded Project Arts in Enrichment in Custody 2 with Novus.ac.uk in 2023.

By integrating multi-sensory experiences and creative expression, "Perfume Stories: Alchemy and Essence" aims to foster a conducive environment for learning and rehabilitation among incarcerated individuals. This innovative approach acknowledges the potential of sensory stimuli and creative outlets in aiding prisoners' educational journeys and personal development within the prison system.

Since its pilot with prisoners at HMP Liverpool in 2022. This workshop has run with prisoners at four sites, HMP Hindley, HMP Buckley Hall, HMP Liverpool and HMP Risley. Learning groups have included addiction recovery group learners, SOTP (Sexual Offences Treatment Programme) and VP learners (Vunerable Learners). Currently, the project has progressed to its latest phase and is being conducted by Novus staff members across five additional sites situated in the North East: HMP Holme House, HMP Durham, HMP Northumberland, HMP Kirklevington, and HMP Deerbolt. 

It's noteworthy that in some of these facilities, the "Perfume Stories: Alchemy and Essence" workshop is incorporated into the Functional Skills English Curriculum.
This expansion demonstrates the program's positive reception and its recognition for its potential benefits within the prison education framework.
DOI: 10.34740/kaggle/dsv/7711256
title: Turku UAS DeepSeaSalama - GAN dataset 1 (TDSS-G1)
DOI: 10.15468/2jw37e
title: Données de mortalité des chiroptères sur le parc éolien du Chemin d'Ablis

description: Inventaire des cadavres de chiroptères retrouvés autour des éoliennes
DOI: 10.15468/5avee3
title: Projet de parc éolien d’Adriers - [COMPLEMENT] suivi mortalité

description: suivi mortalité / Dix éoliennes d'une puissance nominale de l'ordre de 2 MW constitueront le parc éolien d’Adriers. Ces machines seront constituées d'un mât de 100 m de haut environ (sommet de nacelle) qui supportera la nacelle et trois pales. La hauteur maximale atteinte par les pales sera de 150 m par rapport au sol. L’ensemble de ces éoliennes sera raccordé au réseau EDF sur deux postes de livraison.
DOI: 10.15468/nscj5b
title: Parc éolien de Chigné-Eolien Chigné suivi site compensation 2022 REPTILE_INV

description: Eolien Chigné suivi site compensation 2022 REPTILE_INV
DOI: 10.15468/gzv5kj
title: Parc éolien de Moulin d'Emanville 1 et 2 - Suivi chiroptérologique au sol - Moulin d'Emanville 2

description: Suivi chiroptérologique au sol - Moulin d'Emanville 2 Données récoltées en 2020 et 2021
DOI: 10.15468/p42axr
title: Projet de franchissement du Gave de Pau en sous œuvre-Diagnostic écologique (données chiroptères) canalisation Arkema

description: Recherche des arbres présentant des cavités, trous, fissures ou lierre dense pouvant être favorable au gîte des chiroptères arboricoles et inventaire des chiroptères contactés par points d'écoutes (bat box et SM3BAT) par Simethis en 2021-2022 sur la zone concernée par le projet de canalisation Arkema. .
DOI: 10.15468/27dgvh
title: TSOA Lacq-Diagnostic écologique (données chiroptères) projet canalisation Lacq-Abidos

description: Le jeux de données contient l'ensemble des données de chiroptères contactées sur le site d'étude. Les données ont été collecté selon trois procédés : la recherche de gîtes potentiels et la réalisation d'écoutes nocturnes (actives et passives).
DOI: 10.15468/ux6rga
title: Parc éolien de Moulin d'Emanville 1 et 2 - Données d'écoutes chiroptérologiques sur nacelle - Machine E19 (MEMA2)

description: Données d'écoutes chiroptérologiques sur nacelle - Machine E19 (MEMA2) Récoltées de mai à octobre 2020 et de mars à mai 2021
DOI: 10.15468/fp8hz9
title: Autoroute A63 - Bretelle de la sortie 4 Biarritz - Travaux de confortement du talus-Diagnostic écologique (données reptiles) Confortement ASF Biarritz

description: Inventaire des reptiles observés de 2020 à 2023 par Simethis dans le cadre du projet de confortement du talus de la bretelle n°4 - Biarritz la Négresse. La collecte s'est focalisée sur la recherche des individus au sein de milieux favorables. Aucune plaque de chauffe n'a été installée.
DOI: 10.15468/3p6qqd
title: Opération d'aménagement de la ZAC Garonne Eiffel, Quartier SOUYS (33) - Chiroptères - Inventaire non standardisé

description: Liste des chiroptères déterminés dans le cadre des écoutes nocturnes effectuées au niveau de l'aide d'étude
DOI: 10.15468/baynww
title: RNR FR9300189 Réserve Naturelle Régionale du Mont des Avaloirs-PNR NM-Étude des hyménoptères aculéates pollinisateurs des landes de la Réserve naturelle régionale Mont des Avaloirs (2020-2021)

description: Etude des hyménoptères aculéates pollinisateurs (guêpes/abeilles) des landes de la réserve naturelle régionale Mont des Avaloirs (printemps 2020 au printemps 2021). Pièges colorés jaune et captures à vue (Données hyménoptères). Et données complémentaires (hors hyménoptères).
DOI: 10.15468/eypntk
title: Parc éolien de Chigné - Eolien Chigné suivi site compensation REPTILE

description: Eolien Chigné suivi site compensation REPTILE
DOI: 10.15468/xhwwze
title: Prieskum chránených druhov rastlín, Chopok juh, lyžiarske stredisko

description: Prieskum chránených (Príloha č. 4, vyhlášky 170/2021, ktorou sa vykonáva zákon č. 543/2002 Z. z. o ochrane prírody a krajiny) a ohrozených druhov (Červený zoznam výtrusných a kvitnúcich rastlín Slovenska (Eliáš, P. jun., Dítě, D., Kliment, J., Hrivnák, R. & Feráková, 2015/ Červený zoznam lišajníkov Slovenska (Pišút I., Guttová A., Lackovičová A., Lisická E.) prebiehal počas mapovania biotopov. Vzhľadom na početný výskyt jednotlivých chránených či ohrozených druhov, nebol zaznamenávaný pomocou GPS každý druh samostatne. Bod zakreslený v mape predstavuje výskyt v danom biotope, nie počet jedincov jednotlivých druhov.
DOI: 10.5281/zenodo.7940748
title: Trypanosoma brucei predicted protein structures, part 1 of 2

description: AlphaFold2-predicted protein structures for the Trypanosoma brucei (TREU927) proteome, predicted using  input multiple sequence alignments optimised for the Discoba lineage in which T. brucei sits. The structure prediction methodology was exactly as described in doi:10.1371/journal.pone.0259871.


This deposition contains part 1 of 2. To get the full dataset, also download TbruceiTREU927_part2.zip from 10.5281/zenodo.7948119.


Data are organised with one directory per T. brucei TREU927 gene ID (eg. Tb927.1.3600). Within each directory you will find:


<gene id>_predmap.png A left to right representation of the linear protein sequence with one pixel per amino acid. Each horizontal bar represents one structure prediction, colour coded by pLDDT. For small proteins, there will likely be one prediction of the full-length protein. For large proteins, there may be many overlapping predictions.


<gene id>_<start aa>-<end_aa> A directory containing structure prediction of that gene ID between the start and end amino acid. Within this directory you will find:


<gene id>_<start aa>-<end_aa>.json The full data in a JSON format, including linear protein sequence and metadata, along with 5 predicted protein structures ranked from best to worst overall pAE. For each predicted protein structure, the structure (PDB format), its pLDDT per residue and pairwise pAE.


<gene id>_<start aa>-<end_aa>_1.pdb The PDB file of the highest ranked structure.


<gene id>_<start aa>-<end_aa>_1-pae.png A plot of pAE, for the highest ranked structure, at one pixel per amino acid. Shade of green represents pAE for that amino acid pair, see below.


<gene id>_<start aa>-<end_aa>_1-plddt.png A plot of pLDDT, for the highest ranked structure, at one horizontal pixel per amino acid. Bar height and colour both represent pLDDT for that amino acid, see below.


PDB structure and pAE/pLDDT of lower ranked models are embedded in the JSON file.


All pLDDT and pAE plots use the colour scales used by https://alphafold.ebi.ac.uk/: For pLDDT: > 90 (dark blue), 90 > pLDDT > 70 (light blue), 70 > pLDDT > 50 (orange), < 50 (yellow) discontinuous. For pAE: 0 (white angstrom) to dark green (32 angstrom) continuous.


If you use this resource, please cite this Zenodo deposition and doi:10.1371/journal.pone.0259871.
description: No change to data. Documentation and part 1/2 cross-linking corrections.
DOI: 10.5281/zenodo.7948119
title: Trypanosoma brucei predicted protein structures, part 2 of 2

description: AlphaFold2-predicted protein structures for the Trypanosoma brucei (TREU927) proteome, predicted using  input multiple sequence alignments optimised for the Discoba lineage in which T. brucei sits. The structure prediction methodology was exactly as described in doi:10.1371/journal.pone.0259871.


This deposition contains part 2 of 2. To get the full dataset, also download TbruceiTREU927_part1.zip from doi:10.5281/zenodo.7940748.


Data are organised with one directory per T. brucei TREU927 gene ID (eg. Tb927.1.3600). Within each directory you will find:


<gene id>_predmap.png A left to right representation of the linear protein sequence with one pixel per amino acid. Each horizontal bar represents one structure prediction, colour coded by pLDDT. For small proteins, there will likely be one prediction of the full-length protein. For large proteins, there may be many overlapping predictions.


<gene id>_<start aa>-<end_aa> A directory containing structure prediction of that gene ID between the start and end amino acid. Within this directory you will find:


<gene id>_<start aa>-<end_aa>.json The full data in a JSON format, including linear protein sequence and metadata, along with 5 predicted protein structures ranked from best to worst overall pAE. For each predicted protein structure, the structure (PDB format), its pLDDT per residue and pairwise pAE.


<gene id>_<start aa>-<end_aa>_1.pdb The PDB file of the highest ranked structure.


<gene id>_<start aa>-<end_aa>_1-pae.png A plot of pAE, for the highest ranked structure, at one pixel per amino acid. Shade of green represents pAE for that amino acid pair, see below.


<gene id>_<start aa>-<end_aa>_1-plddt.png A plot of pLDDT, for the highest ranked structure, at one horizontal pixel per amino acid. Bar height and colour both represent pLDDT for that amino acid, see below.


PDB structure and pAE/pLDDT of lower ranked models are embedded in the JSON file.


All pLDDT and pAE plots use the colour scales used by https://alphafold.ebi.ac.uk/: For pLDDT: > 90 (dark blue), 90 > pLDDT > 70 (light blue), 70 > pLDDT > 50 (orange), < 50 (yellow) discontinuous. For pAE: 0 (white angstrom) to dark green (32 angstrom) continuous.


If you use this resource, please cite this Zenodo deposition and doi:10.1371/journal.pone.0259871.
description: No change to data. Documentation and part 1/2 cross-linking corrections.
DOI: 10.5281/zenodo.7948120
title: Trypanosoma brucei predicted protein structures, part 2 of 2

description: AlphaFold2-predicted protein structures for the Trypanosoma brucei (TREU927) proteome, predicted using  input multiple sequence alignments optimised for the Discoba lineage in which T. brucei sits. The structure prediction methodology was exactly as described in doi:10.1371/journal.pone.0259871.


This deposition contains part 2 of 2. To get the full dataset, also download TbruceiTREU927_part1.zip from doi:10.5281/zenodo.7940748.


Data are organised with one directory per T. brucei TREU927 gene ID (eg. Tb927.1.3600). Within each directory you will find:


<gene id>_predmap.png A left to right representation of the linear protein sequence with one pixel per amino acid. Each horizontal bar represents one structure prediction, colour coded by pLDDT. For small proteins, there will likely be one prediction of the full-length protein. For large proteins, there may be many overlapping predictions.


<gene id>_<start aa>-<end_aa> A directory containing structure prediction of that gene ID between the start and end amino acid. Within this directory you will find:


<gene id>_<start aa>-<end_aa>.json The full data in a JSON format, including linear protein sequence and metadata, along with 5 predicted protein structures ranked from best to worst overall pAE. For each predicted protein structure, the structure (PDB format), its pLDDT per residue and pairwise pAE.


<gene id>_<start aa>-<end_aa>_1.pdb The PDB file of the highest ranked structure.


<gene id>_<start aa>-<end_aa>_1-pae.png A plot of pAE, for the highest ranked structure, at one pixel per amino acid. Shade of green represents pAE for that amino acid pair, see below.


<gene id>_<start aa>-<end_aa>_1-plddt.png A plot of pLDDT, for the highest ranked structure, at one horizontal pixel per amino acid. Bar height and colour both represent pLDDT for that amino acid, see below.


PDB structure and pAE/pLDDT of lower ranked models are embedded in the JSON file.


All pLDDT and pAE plots use the colour scales used by https://alphafold.ebi.ac.uk/: For pLDDT: > 90 (dark blue), 90 > pLDDT > 70 (light blue), 70 > pLDDT > 50 (orange), < 50 (yellow) discontinuous. For pAE: 0 (white angstrom) to dark green (32 angstrom) continuous.


If you use this resource, please cite this Zenodo deposition and doi:10.1371/journal.pone.0259871.
description: No change to data. Documentation and part 1/2 cross-linking corrections.
DOI: 10.5281/zenodo.10623521
title: Research data for a journal paper (Sato and Chau 2024)

description: This is data used for a submitted article to an AGU journal (particle precipitation)

*b files are original JAVAD file including all the GNSS satellite measurmentin view. The integer before "b" indicate the hour on 2015-03-17.

*.txt file is an extracted link based GNSS observation  parameters from the original JAVAD file. the last three letter before ".txt" indicate the satellite name. e.g. "G28" = GPS 28

ud3_jruh_32 folder contains VHF radar echoes.
DOI: 10.5281/zenodo.10623522
title: Research data for a journal paper (Sato and Chau 2024)

description: This is data used for a submitted article to an AGU journal (particle precipitation)

*b files are original JAVAD file including all the GNSS satellite measurmentin view. The integer before "b" indicate the hour on 2015-03-17.

*.txt file is an extracted link based GNSS observation  parameters from the original JAVAD file. the last three letter before ".txt" indicate the satellite name. e.g. "G28" = GPS 28

ud3_jruh_32 folder contains VHF radar echoes.
DOI: 10.5281/zenodo.10554341
title: Screening for Neglected Tropical Diseases and other infections in African refugees and asylum seekers in Rome and Lazio region, Italy

description: Few reliable data are available on Neglected Tropical Diseases (NTDs) and other infections among African refugees and asylum seekers in Italy. We aimed to estimate the prevalence of NTDs and other infections in a large cohort of African refugees and asylum seekers living in reception centers in Lazio, Italy.
DOI: 10.5281/zenodo.10554342
title: Screening for Neglected Tropical Diseases and other infections in African refugees and asylum seekers in Rome and Lazio region, Italy

description: Few reliable data are available on Neglected Tropical Diseases (NTDs) and other infections among African refugees and asylum seekers in Italy. We aimed to estimate the prevalence of NTDs and other infections in a large cohort of African refugees and asylum seekers living in reception centers in Lazio, Italy.
DOI: 10.5281/zenodo.10691520
title: DtpB 4_docked part 1/3

description: This upload is one of the three uploads that contain 200 docked models generated by Rosetta FlexPepDock pipeline for each di- and tripeptide composed of natural amino acids docked into DtpB. For detailed information on docking and data analysis please see:

Plasticity of the binding pocket in peptide transporters underpins promiscuous substrate recognition

https://dx.doi.org/10.1016/j.celrep.2023.112831

https://zenodo.org/records/7586704 Once you have downloaded all files from the three uploads, run the following commands (make sure that you have enough storage space):

$ cat 4_docked_? > 4_docked.tar.gz$ tar -xzf 4_docked.tar.gz ./

To clean up intermediate files, run:rm 4_docked.tar.gz 4_docked_?

Links to all three parts:DtpB 4_docked part 1/3DtpB 4_docked part 2/3DtpB 4_docked part 3/3
DOI: 10.5281/zenodo.10691521
title: DtpB 4_docked part 1/3

description: This upload is one of the three uploads that contain 200 docked models generated by Rosetta FlexPepDock pipeline for each di- and tripeptide composed of natural amino acids docked into DtpB. For detailed information on docking and data analysis please see:

Plasticity of the binding pocket in peptide transporters underpins promiscuous substrate recognition

https://dx.doi.org/10.1016/j.celrep.2023.112831

https://zenodo.org/records/7586704 Once you have downloaded all files from the three uploads, run the following commands (make sure that you have enough storage space):

$ cat 4_docked_? > 4_docked.tar.gz$ tar -xzf 4_docked.tar.gz ./

To clean up intermediate files, run:rm 4_docked.tar.gz 4_docked_?

Links to all three parts:DtpB 4_docked part 1/3DtpB 4_docked part 2/3DtpB 4_docked part 3/3
DOI: 10.5281/zenodo.10695571
title: DtpB 4_docked part 2/3

description: This upload is one of the three uploads that contain 200 docked models generated by Rosetta FlexPepDock pipeline for each di- and tripeptide composed of natural amino acids docked into DtpB. For detailed information on docking and data analysis please see:

Plasticity of the binding pocket in peptide transporters underpins promiscuous substrate recognition

https://dx.doi.org/10.1016/j.celrep.2023.112831

https://zenodo.org/records/7586704 Once you have downloaded all files from the three uploads, run the following commands (make sure that you have enough storage space):

$ cat 4_docked_? > 4_docked.tar.gz$ tar -xzf 4_docked.tar.gz ./

To clean up intermediate files, run:rm 4_docked.tar.gz 4_docked_?

Links to all three parts:DtpB 4_docked part 1/3DtpB 4_docked part 2/3DtpB 4_docked part 3/3