cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13312118.v1
title: Raw data from the in vitro studies for the seven pathogens- both co-culture and agar overlay

description: Raw data in Excel-form presenting overlay and co-culture experiments with Lactiplantibacillus plantarum 299 and 299v, and seven pathogens. Also supernatant, ph-dependent and bacteriocin experiments with Lp 299 and LP299v with Staph Aureus and E cloacae are included in the raw data
DOI: 10.21227/dw87-zn05
title: wind turbine

description: This dataset is in support of my planned research paper shortly to be submitted to "IEEE Transactions on Energy Conversion".In this dataset,
DOI: 10.5281/zenodo.4299694
title: Kidney glomeruli-ROIs extracted from histological slides stained with HE or PAS.

description: Kidney glomeruli-ROIs extracted from histological slides stained with HE or PAS. The multicenter test set of 78 regions of interest together with annotations. ROIs were extracted from 20 WSIs representing various human kidney pathologies. WSI's came from four sources: three independent medical centers and TCGA. Slides from three sources were stained with HE and slides from one center were stained with PAS. Slides were digitalized on Pannoramic 250 Flash II (3DHISTECH, Budapest, Hungary), Hamamatsu NanoZoomer S60 Digital slide scanner, or using Aperio AT Turbo (Leica Biosystems, Vista, CA). ROIs were extracted for x10, that corresponding to the pixel size ~10um.
description: - ROIs were extracted for x10, that corresponding to the pixel size ~10um. - Name structure: PAS_I_4_S_1_ROI_1 StainingType_Institution_id_ROI_id where: - StainingType is HE or PAS - Institution_id is 1-4, where 3 represents slides from TCGA - each ROI has a corresponding mask - mask colors: green: normal glomeruli, red: sclerosed glomeruli
DOI: 10.5281/zenodo.4299693
title: Kidney glomeruli-ROIs extracted from histological slides stained with HE or PAS.

description: Kidney glomeruli-ROIs extracted from histological slides stained with HE or PAS. The multicenter test set of 78 regions of interest together with annotations. ROIs were extracted from 20 WSIs representing various human kidney pathologies. WSI's came from four sources: three independent medical centers and TCGA. Slides from three sources were stained with HE and slides from one center were stained with PAS. Slides were digitalized on Pannoramic 250 Flash II (3DHISTECH, Budapest, Hungary), Hamamatsu NanoZoomer S60 Digital slide scanner, or using Aperio AT Turbo (Leica Biosystems, Vista, CA). ROIs were extracted for x10, that corresponding to the pixel size ~10um.
description: - ROIs were extracted for x10, that corresponding to the pixel size ~10um. - Name structure: PAS_I_4_S_1_ROI_1 StainingType_Institution_id_ROI_id where: - StainingType is HE or PAS - Institution_id is 1-4, where 3 represents slides from TCGA - each ROI has a corresponding mask - mask colors: green: normal glomeruli, red: sclerosed glomeruli
DOI: 10.6084/m9.figshare.13273136
title: 10_PANCANCER_coreFitness_genes.RData

description: Genes identified as essential for cellular fitness from Behan 2019
DOI: 10.6084/m9.figshare.13273136.v1
title: 10_PANCANCER_coreFitness_genes.RData

description: Genes identified as essential for cellular fitness from Behan 2019
DOI: 10.6084/m9.figshare.13253810.v1
title: Binary Depletion matrices

description: Binary depletion matrices at 5% FDR. For the Sanger and Broad individual (uncorrected datasets) processed with CRISPRcleanR (CCR), CRISPRcleanR+JACKS (CCRJ) and CERES. The Binary depletion matrices for the integrated datasets under the three pre-processing methods above with four different batch correction pipelines:1. ComBat only2. ComBat+Quantile normalisation (QN)3. ComBat+ QN + PC1 (first principal component removed)4. ComBat+QN+PC1-2 (first two principal components removed)
DOI: 10.6084/m9.figshare.13253810
title: Binary Depletion matrices

description: Binary depletion matrices at 5% FDR. For the Sanger and Broad individual (uncorrected datasets) processed with CRISPRcleanR (CCR), CRISPRcleanR+JACKS (CCRJ) and CERES. The Binary depletion matrices for the integrated datasets under the three pre-processing methods above with four different batch correction pipelines:1. ComBat only2. ComBat+Quantile normalisation (QN)3. ComBat+ QN + PC1 (first principal component removed)4. ComBat+QN+PC1-2 (first two principal components removed)
DOI: 10.6084/m9.figshare.13252640
title: Integrated Merged Datasets

description: Integrated Broad and Sanger CRISPR-cas9 datasets. Covering 908 cell lines. 12 datasets in total with ComBat only, ComBat+QN, ComBat+QN+PC1 and ComBat+QN+PC1-2 batch correction methods. Using 3 different pre-processing methods CRISPRcleanR (CCR), CRISPRcleanR +JACKS and CERES
DOI: 10.6084/m9.figshare.13251773.v1
title: MoBEM

description: Cancer functional events to be used as potential biomarkers. From Iorio 2016.
DOI: 10.6084/m9.figshare.13251773
title: MoBEM

description: Cancer functional events to be used as potential biomarkers. From Iorio 2016.
DOI: 10.6084/m9.figshare.13251770
title: CNA_decode

description: Decoding the names of the CNA features in the CFE events from Iorio 2016
DOI: 10.6084/m9.figshare.13251770.v1
title: CNA_decode

description: Decoding the names of the CNA features in the CFE events from Iorio 2016
DOI: 10.6084/m9.figshare.13247183
title: BAGEL_nonEssential

description: Non essential genes as determined by analysis from BAGEL
DOI: 10.6084/m9.figshare.13247183.v1
title: BAGEL_nonEssential

description: Non essential genes as determined by analysis from BAGEL
DOI: 10.6084/m9.figshare.13247180
title: BAGEL_essential

description: Essential genes as determined by Hart 2015 using BAGEL.
DOI: 10.6084/m9.figshare.13247180.v1
title: BAGEL_essential

description: Essential genes as determined by Hart 2015 using BAGEL.
DOI: 10.6084/m9.figshare.13312133.v1
title: Barcelona - Madrid trains

description: demo
DOI: 10.6084/m9.figshare.13312133
title: Barcelona - Madrid trains

description: demo
DOI: 10.6084/m9.figshare.13162724
title: skewed_tdist.csv

description: Based on RNAi dataset analysis using DEMETER. Likelihood of being from a skewed-t distribution and therefore a selectively essential gene.
DOI: 10.6084/m9.figshare.13162724.v1
title: skewed_tdist.csv

description: Based on RNAi dataset analysis using DEMETER. Likelihood of being from a skewed-t distribution and therefore a selectively essential gene.
DOI: 10.6084/m9.figshare.13162562
title: EssGenes.DNA_REPLICATION_cons.RData

description: Known essential genes involved in DNA replication
DOI: 10.5281/zenodo.4299864
title: Discretization of a 3D elasticity problem

description: A.mtx - the system matrix b.mtx - the RHS vector connecting-rod.msh - the discretization grid in the gmsh format C.mtx the - coordinates of the grid nodes
DOI: 10.6084/m9.figshare.13162565.v1
title: EssGenes.PROTEASOME_cons.RData

description: Essential proteasome genes. Used in Behan 2019.
DOI: 10.6084/m9.figshare.13162565
title: EssGenes.PROTEASOME_cons.RData

description: Essential proteasome genes. Used in Behan 2019.
DOI: 10.6084/m9.figshare.13162568
title: EssGenes.KEGG_rna_polymerase.RData

description: Known essential genes, RNA polymerase. Used in Behan 2019
DOI: 10.6084/m9.figshare.13162568.v1
title: EssGenes.KEGG_rna_polymerase.RData

description: Known essential genes, RNA polymerase. Used in Behan 2019
DOI: 10.6084/m9.figshare.13162571
title: EssGenes.ribosomalProteins.RData

description: Known essential genes components of ribosome. Used in Behan 2019
DOI: 10.6084/m9.figshare.13162574
title: EssGenes.SPLICEOSOME_cons.RData

description: Known essential genes components of Spliceosome. Used in Behan 2019
DOI: 10.6084/m9.figshare.13162574.v1
title: EssGenes.SPLICEOSOME_cons.RData

description: Known essential genes components of Spliceosome. Used in Behan 2019
DOI: 10.6084/m9.figshare.13140140
title: BreastSubtypes.txt

description: Annotation of cell line models according to clinical Breast subtypes including PAM50 classification
DOI: 10.6084/m9.figshare.13140134
title: InstituteColours.Rdata

description: Colours for generating figures with Broad and Sanger labels
DOI: 10.6084/m9.figshare.13140134.v1
title: InstituteColours.Rdata

description: Colours for generating figures with Broad and Sanger labels
DOI: 10.5281/zenodo.4298400
title: General characteristics of the working fluids for LHP cooling system design

description: The EVAL project aims to create a demonstrator of a passive cooling system, based on a loop heat pipe (LHP) technology, for efficient thermal management of the Ultra High Bypass Ratio (UHBR) engine bleed system valves exposed to a harsh temperature environment. To achieve this aim, the EVAL team started from a comprehensive study of available working fluids, which have a potential to cope with the target harsh environment and meet the criteria of trade-off analysis such as physical properties (melting and critical temperature, saturated vapour pressure, figures of merit), physical and chemical stability at high temperatures, compatibility with common LHP materials, availability at the market. Also, particular attention is paid to the working fluid environmental impact in terms of ozone-depleting potential (ODP), global warming potential (GWP), compliance with REACH regulations. This data collection presents characteristics of working fluids collected from various sources (specialized databases e.g. ASHRAE, NIST), research articles, conference proceedings, research projects summary reports, data furnished by the thermal fluid manufacturers) and compiled in three Annexes: Annex A presents data as for ODP, GWP and REACH compliance for 728 working fluids. Annex B presents boiling temperature and critical temperature for 728 working fluids. Annex C presents key thermophysical properties for 32 fluids selected as prospective refrigerants for the EVAL project purposes. In general, data collection analyses a wide range of working fluid groups: hydrocarbons, oxygenated hydrocarbons, hydrochlorofluorocarbons, chlorofluorocarbons, hydrofluorocarbons, bromocarbons, hydrobromocarbons and halons, fully fluorinated species, halogenated ethers, fluoroesters, halogenated alcohols, iodocarbons special compounds, mixtures, and others.
DOI: 10.6084/m9.figshare.13140131.v1
title: PipelineColours.Rdata

description: Pipeline colours for generating figures using different pre-processing pipelines e.g. CERES, CRISPRcleanR and CCR-JACKS
DOI: 10.5281/zenodo.4298399
title: General characteristics of the working fluids for LHP cooling system design

description: The EVAL project aims to create a demonstrator of a passive cooling system, based on a loop heat pipe (LHP) technology, for efficient thermal management of the Ultra High Bypass Ratio (UHBR) engine bleed system valves exposed to a harsh temperature environment. To achieve this aim, the EVAL team started from a comprehensive study of available working fluids, which have a potential to cope with the target harsh environment and meet the criteria of trade-off analysis such as physical properties (melting and critical temperature, saturated vapour pressure, figures of merit), physical and chemical stability at high temperatures, compatibility with common LHP materials, availability at the market. Also, particular attention is paid to the working fluid environmental impact in terms of ozone-depleting potential (ODP), global warming potential (GWP), compliance with REACH regulations. This data collection presents characteristics of working fluids collected from various sources (specialized databases e.g. ASHRAE, NIST), research articles, conference proceedings, research projects summary reports, data furnished by the thermal fluid manufacturers) and compiled in three Annexes: Annex A presents data as for ODP, GWP and REACH compliance for 728 working fluids. Annex B presents boiling temperature and critical temperature for 728 working fluids. Annex C presents key thermophysical properties for 32 fluids selected as prospective refrigerants for the EVAL project purposes. In general, data collection analyses a wide range of working fluid groups: hydrocarbons, oxygenated hydrocarbons, hydrochlorofluorocarbons, chlorofluorocarbons, hydrofluorocarbons, bromocarbons, hydrobromocarbons and halons, fully fluorinated species, halogenated ethers, fluoroesters, halogenated alcohols, iodocarbons special compounds, mixtures, and others.
DOI: 10.6084/m9.figshare.13140131
title: PipelineColours.Rdata

description: Pipeline colours for generating figures using different pre-processing pipelines e.g. CERES, CRISPRcleanR and CCR-JACKS
DOI: 10.6084/m9.figshare.13140125
title: TissueColours.Rdata

description: Tissue colours for plotting
DOI: 10.6084/m9.figshare.13140125.v1
title: TissueColours.Rdata

description: Tissue colours for plotting
DOI: 10.6084/m9.figshare.13140119.v1
title: SangerJACKSd_gene_JACKS_results.txt

description: Sanger Score CRISPRcas9 screens processed using CRISPRcleanR followed by JACKS
DOI: 10.6084/m9.figshare.13140119
title: SangerJACKSd_gene_JACKS_results.txt

description: Sanger Score CRISPRcas9 screens processed using CRISPRcleanR followed by JACKS
DOI: 10.6084/m9.figshare.13140116
title: BroadJACKS_gene_JACKS_results.txt

description: Broad 20Q2 CRISPR cas9 screens processed with CRISPRcleanR followed by JACKS
DOI: 10.6084/m9.figshare.13140116.v1
title: BroadJACKS_gene_JACKS_results.txt

description: Broad 20Q2 CRISPR cas9 screens processed with CRISPRcleanR followed by JACKS
DOI: 10.6084/m9.figshare.13140113
title: AllSymbolsHNGCmap.Rdata

description: Map of all gene identifiers to latest HUGO gene symbols
DOI: 10.6084/m9.figshare.13140113.v1
title: AllSymbolsHNGCmap.Rdata

description: Map of all gene identifiers to latest HUGO gene symbols
DOI: 10.6084/m9.figshare.13140110
title: Achilles_gene_effect_unscaled.csv

description: Broad 20Q2 CRISPR cas9 screens processed with CERES
DOI: 10.6084/m9.figshare.13140110.v1
title: Achilles_gene_effect_unscaled.csv

description: Broad 20Q2 CRISPR cas9 screens processed with CERES
DOI: 10.6084/m9.figshare.13140107
title: gene_effect_unscaled.csv

description: Sanger Score CRISPR screens processed using CERES
DOI: 10.6084/m9.figshare.13140107.v1
title: gene_effect_unscaled.csv

description: Sanger Score CRISPR screens processed using CERES
DOI: 10.6084/m9.figshare.13303208.v1
title: Microbial shift during the first two years

description: The shift of peri-implant microbiome during the occurrence of peri-implant mucositis
DOI: 10.6084/m9.figshare.13140101
title: Achilles_replicate_map.csv

description: Information on replicates for Broad 20Q2 CRISPR cas9 screens
DOI: 10.6084/m9.figshare.13140101.v1
title: Achilles_replicate_map.csv

description: Information on replicates for Broad 20Q2 CRISPR cas9 screens
DOI: 10.6084/m9.figshare.13303208
title: Microbial shift during the first two years

description: The shift of peri-implant microbiome during the occurrence of peri-implant mucositis
DOI: 10.6084/m9.figshare.13140083.v1
title: sample_info.csv

description: Sample information from Depmap portal on the Broad 20Q2 CRISPR screens
DOI: 10.6084/m9.figshare.13140083
title: sample_info.csv

description: Sample information from Depmap portal on the Broad 20Q2 CRISPR screens
DOI: 10.6084/m9.figshare.13140080
title: model_list_latest.csv

description: Model annotations from cell model passports
DOI: 10.6084/m9.figshare.13140077
title: Sanger_corrected_logFCs.tsv

description: Sanger CRISPR screens processed using CRISPRcleanR
DOI: 10.6084/m9.figshare.13140071
title: Broad_CCR_20Q2.Rds

description: Broad 20Q2 dataset processed with CRISPRcleanR
DOI: 10.5281/zenodo.4058145
title: Supplementary information for 'Structural and chemical properties of superconducting Co-doped BaFe2As2 thin films grown on CaF2'

description: This repository contains supplementary information for the journal article 'Structural and chemical properties of superconducting Co‑doped BaFe<sub>2</sub>As<sub>2</sub> thin films grown on CaF<sub>2</sub>'. The Jupyter notebooks (.ipynb) demonstrate data treatment for Fig. 4b (folder "HyperSpy EDXS Analysis") and Fig. 10a (folder "Atomap"). The notebooks can be run with the provided datasets. HTML files are also provided for quick inspection of the used procedures in a web browser. Supplementary video files (.mp4) show electron-beam-induced radiation damage at the BaFe<sub>2</sub>As<sub>2</sub>-CaF<sub>2</sub> interface. Please visit the websites of the HyperSpy and Atomap projects for more information. If there are any questions or bugs, please contact me under lukas.gruenewald_at_kit.edu.
DOI: 10.5281/zenodo.4058144
title: Supplementary information for 'Structural and chemical properties of superconducting Co-doped BaFe2As2 thin films grown on CaF2'

description: This repository contains supplementary information for the journal article 'Structural and chemical properties of superconducting Co‑doped BaFe<sub>2</sub>As<sub>2</sub> thin films grown on CaF<sub>2</sub>'. The Jupyter notebooks (.ipynb) demonstrate data treatment for Fig. 4b (folder "HyperSpy EDXS Analysis") and Fig. 10a (folder "Atomap"). The notebooks can be run with the provided datasets. HTML files are also provided for quick inspection of the used procedures in a web browser. Supplementary video files (.mp4) show electron-beam-induced radiation damage at the BaFe<sub>2</sub>As<sub>2</sub>-CaF<sub>2</sub> interface. Please visit the websites of the HyperSpy and Atomap projects for more information. If there are any questions or bugs, please contact me under lukas.gruenewald_at_kit.edu.
DOI: 10.6084/m9.figshare.13312259
title: Service Provision in Times of Pandemic The Impact on Custome Datasets

description: Dataset from both studies of the manuscript "Service Provision in Times of Pandemic The Impact on Customer Well-Being and Repurchase Intentions"<br>
DOI: 10.6084/m9.figshare.13312259.v1
title: Service Provision in Times of Pandemic The Impact on Custome Datasets

description: Dataset from both studies of the manuscript "Service Provision in Times of Pandemic The Impact on Customer Well-Being and Repurchase Intentions"<br>
DOI: 10.5517/ccdc.csd.cc23m89b
title: CCDC 1954931: Experimental Crystal Structure Determination

description: Related Article: C. P. Kaushik, Manisha Chahal, Raj Luxmi, Devinder Kumar, Ashwani Kumar, Mukesh Kumar, Dharmendra Singh|2020|Synth.Commun.|50|3443|doi:10.1080/00397911.2020.1802758
DOI: 10.5517/ccdc.csd.cc23m8bc
title: CCDC 1954932: Experimental Crystal Structure Determination

description: Related Article: C. P. Kaushik, Manisha Chahal, Raj Luxmi, Devinder Kumar, Ashwani Kumar, Mukesh Kumar, Dharmendra Singh|2020|Synth.Commun.|50|3443|doi:10.1080/00397911.2020.1802758
DOI: 10.5517/ccdc.csd.cc22fchd
title: CCDC 1919473: Experimental Crystal Structure Determination

description: Related Article: Andrei N. Yankin, Maksim V. Dmitriev|2020|Synth.Commun.|50|3481|doi:10.1080/00397911.2020.1803357
description: Related Article: Andrei N. Yankin, Maksim V. Dmitriev|2020|CSD Communication|||
DOI: 10.5281/zenodo.4299940
title: renfe demo

description: demo
DOI: 10.5281/zenodo.4299939
title: renfe demo

description: demo
DOI: 10.6084/m9.figshare.13312325
title: Services During the Pandemic Impact on Customer Well-Being and Repurchase_dataset_Study_1.sav

description: Dataset of Study 1 and Study 2 from the manuscript "Services During the Pandemic: Impact on Customer Well-Being and Repurchase" (2020).<br>
DOI: 10.6084/m9.figshare.13302734
title: Cell viability.xlsx

description: Cell viability
DOI: 10.6084/m9.figshare.13302734.v1
title: Cell viability.xlsx

description: Cell viability
DOI: 10.25646/7703
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.5281/zenodo.4300009
title: Data and Scripts for "Real-Time Time-Dependent Density Functional Theory Implementation of Electronic Circular Dichroism Applied to Nanoscale Metal-Organic Clusters"

description: The xyz files were used for the ECD calculation in the paper :https://arxiv.org/abs/2007.08560<br> gsrun.py: ground-state calculation<br> td_calc.py: time -propagation for ECD<br> cdspecX.py: get rotatory strength for plotting
DOI: 10.5281/zenodo.4300008
title: Data and Scripts for "Real-Time Time-Dependent Density Functional Theory Implementation of Electronic Circular Dichroism Applied to Nanoscale Metal-Organic Clusters"

description: The xyz files were used for the ECD calculation in the paper :https://arxiv.org/abs/2007.08560<br> gsrun.py: ground-state calculation<br> td_calc.py: time -propagation for ECD<br> cdspecX.py: get rotatory strength for plotting
DOI: 10.6084/m9.figshare.11954001
title: Traditional African vegetables: species selection, origin, use, and cultivation

description: This database provides a extensive list of 422 reported traditional African vegetables. We selected any vegetable mentioned in at least two of five species lists for more detailed study at regional scale, resulting in a final list of 126 species. A literature review was carried out for all the 126 vegetable crops identified exercise to summarize reported geographic areas of domestication and/or species origin, food uses and cultivation status (Supporting information or originated from Africa were classed as indigenous vegetables. Species introduced from other countries were classed naturalized vegetables. We assume domestication or species origin harbor high levels of genetic resources and traditional knowledge.
DOI: 10.6084/m9.figshare.11954001.v2
title: Traditional African vegetables: species selection, origin, use, and cultivation

description: This database provides a extensive list of 422 reported traditional African vegetables. We selected any vegetable mentioned in at least two of five species lists for more detailed study at regional scale, resulting in a final list of 126 species. A literature review was carried out for all the 126 vegetable crops identified exercise to summarize reported geographic areas of domestication and/or species origin, food uses and cultivation status (Supporting information or originated from Africa were classed as indigenous vegetables. Species introduced from other countries were classed naturalized vegetables. We assume domestication or species origin harbor high levels of genetic resources and traditional knowledge.
DOI: 10.6084/m9.figshare.13312457
title: additional file.xlsx

description: Tetrahydrocurcumin (THC) performs anti-inflammatory effects on allergic asthma via modulating the gut microbiota, especially regulating the abundance of those bacteria with pro-inflammatory functions.