cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.89668
title: Primary Energy Demand - PET Bottles

description: Life Cycle Assessment of beverages in single-use PET bottles using the NREL-maintained US LCI database for the core of the model (polymer production, energy and fuel cycle, combustion). The bar graph indicates the breakdown of energy usage associated with delivering beverages packaged in injection stretch blow molded polyethylene terephthalate (PET) to consumers in California. The functional unit of this analysis is 1 kg of PET resin used in beverage bottles. The model also includes 0.14 kg of polypropylene (PP) resin, required by the product system for caps and labels. The product system delivers 27.9 L of beverage to California consumers, and results in 0.56 kg of secondary (post-recycled) PET resin that can be used to make new bottles or for other purposes. One kg of PET resin is sufficient to contain 27.9 L of beverages, assuming a typical beverage market mix of 60% bottled water, 16% carbonated soft drinks, and 24% juice / sports and other drinks. In California in 2009, 73% of PET bottles in the state's deposit program ("CA CRV") were recycled and 27% were disposed in landfills. The graph depicts this mix (ie. energy requirements reported for materials recovery and reclamation are associated with recovering 0.73 kg of PET bottles). The model excludes production of capital equipment such as factories, vehicles, and machinery; infrastructure such as power plants, fossil fuel extraction equipment, pipelines, roads, and electric grids; land use and water use; and direct human activity. The analysis omits polymer resin additives, inks, dyes, and adhesives; building and administrative overhead; production of the beverage itself; and retail / marketing. The data are from a report to the California Department of Toxic Substances Control, presently under review. Publication in the literature is forthcoming.
DOI: 10.6084/m9.figshare.89765.v2
title: Herring Testicular Transcriptome 31545 contigs.fa

description: Fasta file of contigs from assembly of 454 data from Pacific herring testes library.
DOI: 10.6084/m9.figshare.89667
title: Palaeocaris

description: Micro-CT test scan of Palaeocaris secretane, Montceau-les-Mines, Carboniferous, France
DOI: 10.6084/m9.figshare.89764.v1
title: Herring Hepatic Transcriptome 34300 contigs.fa

description: Fasta file of contigs from assembly of 454 data from Pacific herring liver library.
DOI: 10.6084/m9.figshare.89765.v1
title: Herring Testicular Transcriptome 31545 contigs.fa

description: Fasta file of contigs from assembly of 454 data from Pacific herring liver library.
DOI: 10.6084/m9.figshare.89655
title: Repeating Crumley: Tobacco Seed Growth in D2O

description: In 1950 Crumley et al did a series of experiments where they tested the growth rate of several plants in differing amounts of D2O (heavy water or deuterium oxide). They used H2O, 33% D2O, 63% D2O, and 99% D2O (mixtures with H2O) and discovered that growth rates were drastically slower in increasing amounts of D2O. I was asked to repeat their experiment with just tobacco seeds and for the most part I validated their claims with one crucial exception: tobacco seeds in 99% D2O don't grow at all! Their original data is enclosed here (figure3-crumley.png). All experimental information is kept in an open notebook online where the experiments are organized (see link 2). The first link below takes you to the original Crumley et al paper (starting on page 7). Link 3 takes you to the introduction of the experiment. Link 4 refers to a conversation on Google+ between Steve Koch and myself. From link 2, you will find links to each experimental trial, the results of each trial (hosted on Google Docs), and time-lapse slideshows of seed growth. Note: Trial 2 is omitted from this data set because the experimental conditions caused the trial to fail. Explanation can be found in link 2 as well. Growth images for this trial are hosted in my notebook and here on FigShare.
DOI: 10.6084/m9.figshare.89667.v1
title: Palaeocaris

description: Micro-CT test scan of Palaeocaris secretane, Montceau-les-Mines, Carboniferous, France
DOI: 10.6084/m9.figshare.89668.v2
title: Primary Energy Demand - PET Bottles

description: Life Cycle Assessment of beverages in single-use PET bottles using the NREL-maintained US LCI database for the core of the model (polymer production, energy and fuel cycle, combustion). The bar graph indicates the breakdown of energy usage associated with delivering beverages packaged in injection stretch blow molded polyethylene terephthalate (PET) to consumers in California. The functional unit of this analysis is 1 kg of PET resin used in beverage bottles. The model also includes 0.14 kg of polypropylene (PP) resin, required by the product system for caps and labels. The product system delivers 27.9 L of beverage to California consumers, and results in 0.56 kg of secondary (post-recycled) PET resin that can be used to make new bottles or for other purposes. One kg of PET resin is sufficient to contain 27.9 L of beverages, assuming a typical beverage market mix of 60% bottled water, 16% carbonated soft drinks, and 24% juice / sports and other drinks. In California in 2009, 73% of PET bottles in the state's deposit program ("CA CRV") were recycled and 27% were disposed in landfills. The graph depicts this mix (ie. energy requirements reported for materials recovery and reclamation are associated with recovering 0.73 kg of PET bottles). The model excludes production of capital equipment such as factories, vehicles, and machinery; infrastructure such as power plants, fossil fuel extraction equipment, pipelines, roads, and electric grids; land use and water use; and direct human activity. The analysis omits polymer resin additives, inks, dyes, and adhesives; building and administrative overhead; production of the beverage itself; and retail / marketing. The data are from a report to the California Department of Toxic Substances Control, presently under review. Publication in the literature is forthcoming.
DOI: 10.6084/m9.figshare.89632
title: Radish-rit-data

description: We used wild type Canton S and radish mutant Drosophila flies as in van Swinderen & Brembs (2010). However, the genetic background was now changed to the Canton S strain of Thomas Préat, to test for the stability of the effect across genetic backgrounds. Flies were tethered as described previously (Maye et al., 2007) and tested the following day for flight behavior (for a video of the procedure, see Brembs, 2008). The duration of the experiments had to be confined to 6 min because radish mutants were reluctant to fly continuously in the arena, sampling rate 20Hz. In this experiment, four identical stripes were placed in the center of the four quadrants on the wall of a cylindrical drum. The fly was placed in the center of that drum, attached to a torque meter. The angular speed of arena rotation was made inversely proportional to the yaw torque signal of the fly (Dill et al., 1993; Brembs and Heisenberg, 2000, 2001). Power spectra were computed from the yaw torque data. The 3-6h Methylphenidate ("Ritalin") treatment was administered directly before the experiment at a concentration of 0.5 mg/ml in a 5% sucrose solution.
DOI: 10.6084/m9.figshare.89633
title: Phylogenetic data from Agnolin, 2007

description: The dataset presented is a matrix of character codings of morphological characters abstracted (http://dx.doi.org/10.1007/s10441-008-9064-7) from observation of real specimens of each of the taxa listed. Some of the taxa are extinct e.g. Brontornis (http://en.wikipedia.org/wiki/Brontornis), some of the taxa are extant e.g. Rallidae (http://en.wikipedia.org/wiki/Rallidae). The file is formatted in http://en.wikipedia.org/wiki/Nexus_file format to make it of maximum use.
DOI: 10.6084/m9.figshare.89655.v1
title: Tobacco Seed Growth in D2O

description: In 1950 Crumley et al did a series of experiments where they tested the growth rate of several plants in differing amounts of D2O. They used H2O, 33% D2O, 63% D2O, and 99% D2O (mixtures with H2O) and discovered that growth rates were drastically slower in increasing amounts of D2O. I was asked to repeat their experiment with just tobacco seeds and for the most part I validated their claims with one crucial exception: tobacco seeds in 99% D2O don't grow at all! All experimental information is kept in an open notebook online at research.iheartanthony.com and you can access all the trials for this experiment through this link: http://research.iheartanthony.com/active-experiments/#RC Contained on that page are links to an experimental summary, and links to each individual trial which will allow you access to see the setup and day to day results of each trial. Feel free to browse around and provide feedback.
DOI: 10.6084/m9.figshare.89632.v2
title: Radish-rit-data

description: We used wild type Canton S and radish mutant Drosophila flies as in van Swinderen & Brembs (2010). However, the genetic background was now changed to the Canton S strain of Thomas Préat, to test for the stability of the effect across genetic backgrounds. Flies were tethered as described previously (Maye et al., 2007) and tested the following day for flight behavior (for a video of the procedure, see Brembs, 2008). The duration of the experiments had to be confined to 6 min because radish mutants were reluctant to fly continuously in the arena, sampling rate 20Hz. In this experiment, four identical stripes were placed in the center of the four quadrants on the wall of a cylindrical drum. The fly was placed in the center of that drum, attached to a torque meter. The angular speed of arena rotation was made inversely proportional to the yaw torque signal of the fly (Dill et al., 1993; Brembs and Heisenberg, 2000, 2001). Power spectra were computed from the yaw torque data. The 3-6h Methylphenidate ("Ritalin") treatment was administered directly before the experiment at a concentration of 0.5 mg/ml in a 5% sucrose solution.
DOI: 10.6084/m9.figshare.89633.v1
title: Phylogenetic data from Agnolin, 2007

description: The dataset presented is a matrix of character codings of morphological characters abstracted (http://dx.doi.org/10.1007/s10441-008-9064-7) from observation of real specimens of each of the taxa listed. Some of the taxa are extinct e.g. Brontornis (http://en.wikipedia.org/wiki/Brontornis), some of the taxa are extant e.g. Rallidae (http://en.wikipedia.org/wiki/Rallidae). The file is formatted in http://en.wikipedia.org/wiki/Nexus_file format to make it of maximum use.
DOI: 10.6084/m9.figshare.89588
title: Multitest1

description: Data re-extracted from 3 different papers (refs given), properly and usably formatted in a PAUP*-compliant Nexus file. See the original papers for further details.
DOI: 10.6084/m9.figshare.89632.v1
title: Radish-rit-data

description: We used wild type Canton S and radish mutant Drosophila flies as in van Swinderen & Brembs (2010). However, the genetic background was now changed to the Canton S strain of Thomas Préat, to test for the stability of the effect across genetic backgrounds. Flies were tethered as described previously (Maye et al., 2007) and tested the following day for flight behavior (for a video of the procedure, see Brembs, 2008). The duration of the experiments had to be confined to 6 min because radish mutants were reluctant to fly continuously in the arena, sampling rate 20Hz. In this experiment, four identical stripes were placed in the center of the four quadrants on the wall of a cylindrical drum. The fly was placed in the center of that drum, attached to a torque meter. The angular speed of arena rotation was made inversely proportional to the yaw torque signal of the fly (Dill et al., 1993; Brembs and Heisenberg, 2000, 2001). Power spectra were computed from the yaw torque data. The 3-6h Methylphenidate ("Ritalin") treatment was administered directly before the experiment at a concentration of 0.5 mg/ml in a 5% sucrose solution.
DOI: 10.6084/m9.figshare.89655.v4
title: Repeating Crumley: Tobacco Seed Growth in D2O

description: In 1950 Crumley et al did a series of experiments where they tested the growth rate of several plants in differing amounts of D2O (heavy water or deuterium oxide). They used H2O, 33% D2O, 63% D2O, and 99% D2O (mixtures with H2O) and discovered that growth rates were drastically slower in increasing amounts of D2O. I was asked to repeat their experiment with just tobacco seeds and for the most part I validated their claims with one crucial exception: tobacco seeds in 99% D2O don't grow at all! Their original data is enclosed here (figure3-crumley.png). All experimental information is kept in an open notebook online where the experiments are organized (see link 2). The first link below takes you to the original Crumley et al paper (starting on page 7). Link 3 takes you to the introduction of the experiment. Link 4 refers to a conversation on Google+ between Steve Koch and myself. From link 2, you will find links to each experimental trial, the results of each trial (hosted on Google Docs), and time-lapse slideshows of seed growth. Note: Trial 2 is omitted from this data set because the experimental conditions caused the trial to fail. Explanation can be found in link 2 as well. Growth images for this trial are hosted in my notebook and here on FigShare.
DOI: 10.6084/m9.figshare.89584
title: India Africa Asia HGDP HapMap Xing

description: The data consists in genome-wide SNPs that were obtained from 6 different sources, keeping the SNPs common to all 6 sources. The combined dataset consisted in 1656 autosomal SNPs for individuals from 208 populations. It was analyzed using FRAPPE, with default settings. The bars represent the percentages of each clusters determined by FRAPPE. The clustering analyses were performed for 2 to 16 clusters. The results shown on these bar plots are the average percentages of the different clusters for the populations.
DOI: 10.6084/m9.figshare.89588.v1
title: Multitest1

description: Data re-extracted from 3 different papers (refs given), properly and usably formatted in a PAUP*-compliant Nexus file. See the original papers for further details.
DOI: 10.6084/m9.figshare.89655.v3
title: Repeating Crumley: Tobacco Seed Growth in D2O

description: In 1950 Crumley et al did a series of experiments where they tested the growth rate of several plants in differing amounts of D2O (heavy water or deuterium oxide). They used H2O, 33% D2O, 63% D2O, and 99% D2O (mixtures with H2O) and discovered that growth rates were drastically slower in increasing amounts of D2O. I was asked to repeat their experiment with just tobacco seeds and for the most part I validated their claims with one crucial exception: tobacco seeds in 99% D2O don't grow at all! All experimental information is kept in an open notebook online where the experiments are organized (see link 2). The first link below takes you to the original Crumley et al paper (starting on page 7). Link 3 takes you to the introduction of the experiment. Link 4 refers to a conversation on Google+ between Steve Koch and myself. From link 2, you will find links to each experimental trial, the results of each trial (hosted on Google Docs), and time-lapse slideshows of seed growth. Note: Trial 2 is omitted from this data set because the experimental conditions caused the trial to fail. Explanation can be found in link 2 as well. Growth images for this trial are hosted in my notebook and here on FigShare.
DOI: 10.6084/m9.figshare.89562
title: FTIR spectroscopy of different water types

description: In order to understand the accuracy of our DDW effects on life experiments we need a way to ensure that the deuterium depleted water is not rapidly changing into normal water (which contains approximately 150ppm deuterium). We have used FTIR spectroscopy to determine if this is a viable method to ascertain differences in the amounts of deuterium between various water types. In this study we are comparing the transmission curves of DI water, 99.9% D2O, DDW (&lt;1ppm deuterium), an approximately 50/50 mix of DDW and D2O, and a 3 month old sample of DDW. We are using a Nicolet 6700 FTIR spectrometer [http://www.thermoscientific.com/ecomm/servlet/productsdetail?productId=11961710&groupType=PRODUCT&searchType=0&&storeId=11152 from Thermo]. The exact setup can be found in the link that accompanies this dataset, along with explanations of the data. Follow this [http://research.iheartanthony.com/tag/ft-ir/ link] for up to date information on the experiment. Aside: I've updated edited versions of the data (files 4 and 5) and the original unedited data (files 6-12).
DOI: 10.6084/m9.figshare.89584.v1
title: India Africa Asia HGDP HapMap Xing

description: The data consists in genome-wide SNPs that were obtained from 6 different sources, keeping the SNPs common to all 6 sources. The combined dataset consisted in 1656 autosomal SNPs for individuals from 208 populations. It was analyzed using FRAPPE, with default settings. The bars represent the percentages of each clusters determined by FRAPPE. The clustering analyses were performed for 2 to 16 clusters. The results shown on these bar plots are the average percentages of the different clusters for the populations.
DOI: 10.6084/m9.figshare.89463.v1
title: (A) Survival rates of mice prenatally treated with saline (white circle), fluvoxamine (gray triangle) or fluoxetine (black square) from 1 to 20 days after birth

description: 81% of the fluoxetine-treated offspring died within 20 days after birth. (B) HE-staining of a horizontal section of the hearts showed dilated cardiomyopathy in fluoxetine-treated offspring. (C) Wt/r ratios of the left ventricle presented as meanï¿½S.E.M for groups treated with saline (white bars), fluvoxamine (gray bars) and fluoxetine (black bars) at P20 (N?=?6 for saline and fluvoxamine, N?=?4 for fluoxetine) and adulthood (N?=?5 for saline and fluvoxamine, N?=?3 for fluoxetine). Wt/r?=?wall thickness/radius, * p<b>Copyright information:</b>Taken from "Modulation of Serotonin Transporter Function during Fetal Development Causes Dilated Heart Cardiomyopathy and Lifelong Behavioral Abnormalities"PLoS ONE 2008;3(7):-.Published online 23 Jul 2008PMCID:PMC2518512.Noorlander et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
DOI: 10.6084/m9.figshare.89458.v1
title: Geometric means of serum GGT (), vitamin C (), carotenoids (), and vitamin E () by deciles of blood lead or urinary cadmium levels, adjusted for race, sex, age, education, and poverty income ratio

description: <b>Copyright information:</b>Taken from "Graded Associations of Blood Lead and Urinary Cadmium Concentrations with Oxidative-Stressï¿½Related Markers in the U.S. Population: Results from the Third National Health and Nutrition Examination Survey"Environmental Health Perspectives 2005;114(3):350-354.Published online 15 Nov 2005PMCID:PMC1392227.This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original DOI. Concentrations of carotenoids and vitamin E were additionally adjusted for serum cholesterol. Serum carotenoids were the sum of ?-carotene, ?-carotene, ?-cryptoxanthin, zeaxanthin/lutein, and lycopene.
DOI: 10.6084/m9.figshare.89451.v1
title: (A) Progression free survival for the two groups of patients, those that had previously received 5-FU or xeloda, and those that had received at least one oxaliplatin or irinotecan containing regimen

description: <b>Copyright information:</b>Taken from "A prospective evaluation of treatment with Selective Internal Radiation Therapy (SIR-spheres) in patients with unresectable liver metastases from colorectal cancer previously treated with 5-FU based chemotherapy"BMC Cancer 2005;5():132-132.Published online 15 Oct 2005PMCID:PMC1274303.Copyright ï¿½ 2005 Lim et al; licensee BioMed Central Ltd. (B) Overall survival for the two groups of patients, those that had previously received 5-FU or xeloda, and those that had received at least one oxaliplatin or irinotecan containing regimen.
DOI: 10.6084/m9.figshare.89441.v1
title: Analysis of complementation of LJ14 () harboring pTrc-RRF (sectors 1), pBR- (sectors 2) and pTrc99C (sectors 3)

description: <b>Copyright information:</b>Taken from "Evidence for a role of initiation factor 3 in recycling of ribosomal complexes stalled on mRNAs in "Nucleic Acids Research 2005;33(17):5591-5601.Published online 30 Sep 2005PMCID:PMC1240113.ï¿½ The Author 2005. Published by Oxford University Press. All rights reserved Overnight cultures were streaked on LB agar ampicillin plates, and incubated for 36 h at the indicated temperatures. Immunoblot analysis of IF3 levels in total cell extracts (?15 ï¿½g) of LJ14 harboring pTrc-RRF (lane 1), pBR- (lane 2) or vector alone, pTrc99C (lane 3). In lane 4, ?0.2 ï¿½g IF3 was analyzed as marker. A Coomassie blue stained gel is shown in the above panel (i) as a control for equal loading of total proteins. Band corresponding to IF3 is indicated in the immunoblot in the lower panel (ii). Analysis of growth of transformants of various derivatives of LJ14 () and STL1670 in LB broth containing ampicillin, at 30ï¿½C (left) and 37ï¿½C (right). Saturated cultures grown at 30ï¿½C were inoculated (0.1%) into LB broth containing ampicillin and the growth was monitored at 595 nm at regular time intervals. Details of various strains are as shown in the panels.
DOI: 10.6084/m9.figshare.89411.v1
title: Effect of verapamil (Vera) and EGTA on UV-B-induced CDPK activity (), MBPK activity (), and gene expression () and accumulation of catharanthine () in cell suspension cultures of

description: <b>Copyright information:</b>Taken from "UV-B-induced signaling events leading to enhanced-production of catharanthine in cell suspension cultures"BMC Plant Biology 2007;7():61-61.Published online 7 Nov 2007PMCID:PMC2213653. Six-day-old cell suspension cultures were pre-incubated with verapamil or EGTA at concentrations indicated followed by 5 min of UV-B irradiation. Other details are as in the legend to Figure 5.
DOI: 10.6084/m9.figshare.89414.v1
title: Stringent and reproducible tetracycline-regulated transgene expression by site-specific insertion at chromosomal loci with pre-characterised induction characteristics-0

description: <b>Copyright information:</b>Taken from "Stringent and reproducible tetracycline-regulated transgene expression by site-specific insertion at chromosomal loci with pre-characterised induction characteristics"BMC Molecular Biology 2007;8():30-30.Published online 10 May 2007PMCID:PMC1884169.ch. B) The Screen and Insert type 1 (ScIn-1) strategy. C) The Screen and Insert type 2 (ScIn-2) strategy. Promoterless cassettes are shown for a generic gene of interest (GOI), and for genes encoding green fluorescent proteins (EGFP and d2EGFP), luciferase (luc), hygromycin phophotransferase (hygro) and guanosine phospribosyltranferase (gpt). See text for details.
DOI: 10.5281/zenodo.4015542
title: Wikidata Dump

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0
DOI: 10.5281/zenodo.4015541
title: Wikidata Dump

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0