cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11873859.v2
title: Integrating Multidimensional Data for Clustering Analysis With Applications to Cancer Patient Data

description: Advances in high-throughput genomic technologies coupled with large-scale studies including The Cancer Genome Atlas (TCGA) project have generated rich resources of diverse types of omics data to better understand cancer etiology and treatment responses. Clustering patients into subtypes with similar disease etiologies and/or treatment responses using multiple omics data types has the potential to improve the precision of clustering than using a single data type. However, in practice, patient clustering is still mostly based on a single type of omics data or ad hoc integration of clustering results from individual data types, leading to potential loss of information. By treating each omics data type as a different informative representation from patients, we propose a novel multi-view spectral clustering framework to integrate different omics data types measured from the same subject. We learn the weight of each data type as well as a similarity measure between patients via a nonconvex optimization framework. We solve the proposed nonconvex problem iteratively using the ADMM algorithm and show the convergence of the algorithm. The accuracy and robustness of the proposed clustering method is studied both in theory and through various synthetic data. When our method is applied to the TCGA data, the patient clusters inferred by our method show more significant differences in survival times between clusters than those inferred from existing clustering methods. Supplementary materials for this article, including a standardized description of the materials available for reproducing the work, are available as an online supplement.
DOI: 10.6084/m9.figshare.19459733.v1
title: Percutaneous nephrostomy in complicated urinary tract infections

description: Purpose: The study aimed to determine the various indications for PCN primarily in patients with a urinary tract infection, and to determine the various complications arising in these patients due to the procedure. Materials and methods A retrospective study of 5-years data based on registers of the Department of Urology was performed. Among 716 patients, 226 inpatient data were obtained, curated, and analyzed. Indications for PCN, the periprocedural complications, the PCN's duration, details of antibiotics, risk factors for UTI, development of acute kidney injury, and renal replacement therapy were recorded. Results Patients were mostly female (53.1%, n=120/226). Malignancy (n=109, carcinoma cervix=68/109) and nephrolithiasis (n=70) contributed to 79.2%. Infections such as pyelonephritis, renal abscess, perinephric abscess, and genitourinary tuberculosis were identified in 47. Infectious diseases were significantly associated with younger age, female gender, diabetes, and prior pyelonephritis. PCN was placed a median of two days after admission, and bilateral PCN was placed in 36 (15.2%) patients. Hydroureteronephrosis (probably infected) was an indication for PCN in 164/226 patients. In 33 patients with an infectious disease, PCN was performed for an obstructed urinary system. One major and two minor complications gave a rate of 0.06% for patients with infections, which was less than the accepted threshold of 4%. Conclusion We intended to study the utility and problems with placing a percutaneous nephrostomy (PCN) catheter in patients with complicated urinary infections. We conclude that PCN is a safe and effective procedure in urinary tract infections with obstructed drainage.
DOI: 10.3535/0ls-gw9-cj4
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5ny-jnj-pdk
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1136081_d252
title: Ex13R51 DAPI-2 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.28408646.v1
title: Morphology and fractal dimension of real-world soot particles from vehicular emissions in three contrasting urban tunnels

description: Data from Figures 2, 3, 4 and 5 in the article "Morphology and fractal dimension of real-world soot particles from vehicular emissions in three contrasting urban tunnels"
DOI: 10.3535/m5a-l68-g36
title: Minerals

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mm6-e8n-t3c
title: Minerals

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22255564.v1
title: Additional File 1. Comma-separated file containing site-level data for the 110 reef sites analyzed Silveira et al. 2023, BMC Biology.

description: Data includes location for each sampling site (geographic region, island, site name, geographical coordinates), date of sampling, type of reef, depth, benthic cover (hard coral, crustose coralline algae, sum of calcifying organisms, macroalgae, turf algae, sum of fleshy organisms, and sand), viral and bacterial abundance, virus-to-microbe ratio, fish biomass (herbivore, invertivore, planktivores, piscivores, sharks, and others), dissolved inorganic carbon, and total alkalinity.
DOI: 10.17632/4zrwh56vd5
title: Data for: Reflectance Spectral Study of Clay Mineralogical Evolution and Weathering Intensity of A Thick Basaltic Weathering Sequence in Hainan Island, South China

description: These are Co XRD data of samples described in our paper.
DOI: 10.3535/hec-fv0-cl5
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1057806.v1
title: Tree for NF1 and MNF

description: Phylogentetic tree of NF1 and MNF protein sequences.
DOI: 10.6084/m9.figshare.19642425.v2
title: The Respondent characteristics of the Modelling Computer Assisted Audit Techniques (CAATs) in Enhancing Indonesian Public Sector

description: The Respondent characteristics of the Modelling Computer Assisted Audit Techniques (CAATs) in Enhancing Indonesian Public Sector
DOI: 10.6084/m9.figshare.25092815.v1
title: Brasenia_schreberi_RED_repeats

description: Draft genome of Brasenia schreberi, a worldwide distributed and endangered aquatic plant
DOI: 10.3535/9j5-9wg-jh0
title: Lichas

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ggr-8lk-fs7
title: †Orthoceras Bruguière, 1789

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.15091494.v1
title: Gene name to ID conversion

description: contains 2 columns:gene, ENSEMBL gene IDgeneName, common gene name
DOI: 10.3535/2wz-9hk-gw8
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/c8h-g2c-cp3
title: †Diplotrypa petropolitana Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jat-haz-2xx
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.16419063.v1
title: Data used in Within-individual repeatability in telomere length: a meta-analysis on non-mammalian vertebrates

description: Data used in the analyses presented in "Within-individual repeatability in telomere length: a meta-analysis in non-mammalian vertebrates" published in Molecular Ecology special issue 'Telomeres in Ecology and Evolution' (accepted in August 2021)
DOI: 10.3535/345-sfq-l05
title: †Subulites Emmons, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/thj-zsc-a75
title: Platycladus Spach

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13202852.v1
title: DIAMOND v2 benchmark query FASTA (shuffled)

description: FASTA file of query protein sequences used for the DIAMOND v2.0 benchmark (non-annotated ranges shuffled).
DOI: 10.6084/m9.figshare.24750693.v1
title: Genome assembly of Cochlearia groenlandica haplotig 2

description: Partially phased haplotig genome assembly of Cochlearia groenlandica (haplotig 2)
DOI: 10.6084/m9.figshare.3560064.v1
title: Appendix A. Table of definitions and input values for model parameters, table comparing model output and estimates from natural ecosystems, and figure of dreissenid model simulations.

description: Table of definitions and input values for model parameters, table comparing model output and estimates from natural ecosystems, and figure of dreissenid model simulations.
DOI: 10.3535/964-yrn-v9b
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/htd-z2x-05y
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28405694.v1
title: Foclóir Tráchtais v1.2

description: Is foclóir ríomheolaíochta é an Foclóir Tráchtas curtha le chéile ag Seathrún (Jeffrey) Sardina dá thráchtas PhD. Cruthaíodh é chun téarmaí ríomheolaíochta nach raibh ar fáil i bhfoclóirí eile a chur ar fáil.
DOI: 10.6084/m9.figshare.8637293.v1
title: Academic Hardiness as a Moderator between Evaluative Concerns Perfectionism and Academic Procrastination in Students

description: <b>Academic Hardiness as a Moderator between Evaluative Concerns Perfectionism and Academic Procrastination in Students</b>
DOI: 10.3535/fqf-enx-js4
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hh0-rvt-gzt
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sst-dgx-80z
title: Hyolithes sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.4038066.v1
title: Data and loss function tool from On the use of Bayesian decision theory for issuing natural hazard warnings

description: This contains all the data used in the paper as well as R code to implement the parametric loss function model for eliciting loss functions
DOI: 10.3535/3af-d2f-fbr
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mr9-lcx-qlv
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.4564792
title: Comparative GMM and GQL logistic regression models on hierarchical data

description: We often rely on the likelihood to obtain estimates of regression parameters but it is not readily available for generalized linear mixed models (GLMMs). Inferences for the regression coefficients and the covariance parameters are key in these models. We presented alternative approaches for analyzing binary data from a hierarchical structure that do not rely on any distributional assumptions: a generalized quasi-likelihood (GQL) approach and a generalized method of moments (GMM) approach. These are alternative approaches to the typical maximum-likelihood approximation approach in Statistical Analysis System (SAS) such as Laplace approximation (LAP). We examined and compared the performance of GQL and GMM approaches with multiple random effects to the LAP approach as used in PROC GLIMMIX, SAS. The GQL approach tends to produce unbiased estimates, whereas the LAP approach can lead to highly biased estimates for certain scenarios. The GQL approach produces more accurate estimates on both the regression coefficients and the covariance parameters with smaller standard errors as compared to the GMM approach. We found that both GQL and GMM approaches are less likely to result in non-convergence as opposed to the LAP approach. A simulation study was conducted and a numerical example was presented for illustrative purposes.
DOI: 10.3535/3jv-2ea-e3w
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/q7m-9pb-406
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.154969.v1
title: Data File 1: summary data

description: RNA-sequencing by Expectation Maximization summary of quality metrics for paired-end Illumina runs. The last column indicates the filenames of the corresponding FASTQ files available at Sequence Read Archive, appended with an “F” for the forward sequence read or an “R” for the reverse sequence read.
DOI: 10.6084/m9.figshare.26401282.v1
title: n-Alkanes during the last deglaciation from Kielguo crater lake in Northeast China

description: The Hydroclimatological proxies based on n-alkanes during the interval of ~10-20 ka BP from the Kielguo crater lake in Northeast China.
DOI: 10.3535/3jt-7d5-5sa
title: †Asaphidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jw1-79h-3az
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.2074951.v1
title: Gale2016data.xls

description: These data are collected from Mental health professionals in response to a vignette describing a fictitious patient with enduring mental health problems.
DOI: 10.3535/77c-nlv-nkp
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nv3-9c4-xpe
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.4459457
title: Koranic Science Taisîr [IO Bijapur 269] كِتابُ التَّيْسِيْرِ

description: Koranic Science

This manuscript is now IO Bijapur 269 in the India Office collections.

[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 42 here with further notations and hyperlinks].


 

42.

B 269. Size 6 in. by 5 in.; foll. 114. From twelve to fifteen lines in a page.

Another copy of the Taisîr [ed note: كِتابُ التَّيْسِيْرِ في الْقراأتِ السَّبْعِ], imperfect both at the beginning and end. Clearly written; of the 10th century of the Hijrah.

It begins with the words:

ام لم تنذرهم و شبهه وورش بضمها (=fol. 12 of the preceding MS.), and ends with

ابن کثیر و مناة الثالثة بالمد و الهمز و الباقون (=fol. 78 of the preceding MS.)

Injured by damp, especially near the beginning. There is written, upon the edge, مختصر قراءت السبعة, and fol. 13 is wrongly inscribed بحر تجرید  cf. Catal. 234, v.
DOI: 10.5281/zenodo.4459458
title: Koranic Science Taisîr [IO Bijapur 269] كِتابُ التَّيْسِيْرِ

description: Koranic Science

This manuscript is now IO Bijapur 269 in the India Office collections.

[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 42 here with further notations and hyperlinks].


 

42.

B 269. Size 6 in. by 5 in.; foll. 114. From twelve to fifteen lines in a page.

Another copy of the Taisîr [ed note: كِتابُ التَّيْسِيْرِ في الْقراأتِ السَّبْعِ], imperfect both at the beginning and end. Clearly written; of the 10th century of the Hijrah.

It begins with the words:

ام لم تنذرهم و شبهه وورش بضمها (=fol. 12 of the preceding MS.), and ends with

ابن کثیر و مناة الثالثة بالمد و الهمز و الباقون (=fol. 78 of the preceding MS.)

Injured by damp, especially near the beginning. There is written, upon the edge, مختصر قراءت السبعة, and fol. 13 is wrongly inscribed بحر تجرید  cf. Catal. 234, v.
DOI: 10.3535/r0t-dq6-sa0
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wnk-xjm-fjz
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21679661.v1
title: Geospatial data used to generate candidate environmental surveillance site locations (Vellore, India)

description: This folder contains processed digital spatially georeferenced raster data generated during the hydrological reconditioning approach described.
DOI: 10.3535/bns-zr7-959
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/lmp-fy4-9sn
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/m1r-m3e-s07
title: †Asaphidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/te0-g08-42n
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24186522.v1
title: 其他数据集上的可视化结果

description: The visualization results on other datasets.
DOI: 10.3535/dt2-2hf-6x1
title: †Sowerbyella Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sn0-320-0nh
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13236986.v3
title: Marine debris on Cassino Beach, Brazil. 2015 to 2020

description: This dataset contains 1 csv file (Projeto_LixoMarinho_macrolitter.xlsx), divided in 3 sheets. One sheet is the core file, which contains information about station label (S1, S2, S3 and S4), data of collection, GPS coordinates in decimal degrees, strata (dune, water and middle), sampling protocol, effort and sampled area. One sheet contains environmental data, as wind direction and intensity and beach width collected during the sampling. One sheet contains marine litter data as material, type, source, colour, degree of hardness, size and weight. A “parameters information” text file contains description and/or measured unit of columns content for the three csv files. The United Nations Environment Programme (UNEP) defines <strong>marine</strong> <strong>litter</strong> as 'any persistent, manufactured or processed solid material discarded, disposed of or abandoned in the <strong>marine</strong> and coastal environment'. Marine litter were collected in Cassino beach in Rio Grande municipality, Rio Grande do Sul, Brazil in four points (S1, S2, S3, S4). S4 started to be sampled in May 2016. Some months was not possible to sample S4 due meteorological conditions that difficulted access to this point. Sampling were done monthly from 2015 (December), 2016 (January – December, except September), 2018 (December) and 2019 (January-March). Items were removed from dune base and wrack line strata in a 200 m<sup>2</sup> transects triplicate. In middle strata area vary according beach width and only started to be sampled in January 2017. The items were divided in 8 material-categories (Fabric, Glass, Metal, Other, Paper, Plastic, Rubber and Wood), 8 sources-categories (Domestic, Domestic / Tourism, Fishery, International, Religious, Tourism, Undetermined and Vessel) and 119 types (specific items). Type, material and source list was based in UNEP/IOC Guidelines on Survey and Monitoring of Marine Litter guide, 2009 with the addition of region-specific items. All data were collected by Projeto Lixo Marinho by Federal University of Rio Grande (FURG). GPS positions were taken for each sampling site. All items were removed from the beach, cleaned and dried in laboratory, after taking measures all items were properly disposed of and recycled (where possible).<b></b>
DOI: 10.6084/m9.figshare.14736480.v1
title: 210602_TABLES.docx

description: disability accommodation data
DOI: 10.3535/zlk-0px-t8g
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12830898.v1
title: Supplementary Table 1 from Arf6 determines tissue architecture by stabilizing intercellular adhesion

description: Supplementary Table 1
DOI: 10.6084/m9.figshare.28473722.v4
title: LiDAR data (ROS bag) and demo videos of RealRecon.

description: We collected five ROS bags containing LiDAR and odometry data from real-world experiments and two additional ROS bags from Unreal Engine simulation environments.<br>DemoVideos contains 3 sub demo videos which are used for demonstration.
DOI: 10.3535/gpt-8tq-jsg
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yjv-6xs-a4c
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28574657.v1
title: Organic Matter and Nutrient Content within Putting Green Root Zones in Tennessee _Table 1.xlsx

description: This research was conducted to determine root zone properties on putting greens located in the state of Tennessee. A full research paper was published in the Agronomy Journal (https://doi.org/10.1002/agj2.21675). Please visit the link to read more on research methodology and findings.
DOI: 10.3535/jxs-p86-d6r
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y4b-hmx-xg8
title: †Murchisonia d'Archiac & Verneuil, 1841

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21265326.v1
title: AIS data

description: AIS data used in artical "Inland Waterway Ship Path Planning Based on Improved RRT Algorithm"
DOI: 10.6084/m9.figshare.22180354.v1
title: Stranded Traveller Survey Data

description: This study aimed to evaluate the psychological and financial distress reported by citizens and permanent residents stranded abroad due to international travel restrictions introduced in response to the COVID-19 pandemic.
DOI: 10.3535/v10-6ss-5tr
title: †Siphonotreta Verneuil, 1845

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zeh-7mk-r8v
title: †Conolichas eichwaldi (Niezskowski, 1857)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11881221.v3
title: Dataset: Ministers in Argentina and Brazil (1983-2016)

description: Goal: We compared two countries, Brazil and Argentina, in order to identify similarities and differences in their respective selection and appointment processes for State ministers. This comparison is particularly interesting because, as several authors have shown, unlike Brazil, Argentina has no coalition presidentialism, at least when it comes to ministerial selection. Hence, the comparison could reveal important singularities as to how both presidential regimes form their government team.
DOI: 10.6084/m9.figshare.1541103.v1
title: Luchtafweer, folder

description: Collectie Nivard