cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26190/qabr-dw86
title: Hydrological changes during the penultimate deglaciation and Last interglacial

description: Hydrological changes during the penultimate deglaciation and Last interglacial as simulated in a transient experiment performed with LOVECLIM and focusing on North Africa
description: A transient experiment of the penultimate deglaciation and Last interglacial (140-120 ka) is performed with LOVECLIM following the PMIP4 protocol (Menviel et al., 2019)
description: https://gmd.copernicus.org/articles/12/3649/2019/
DOI: 10.26190/5e1ce1e12f00f
title: LGM circulation

description: Data used in "Enhanced mid-depth southward transport in the Northeast Atlantic at the Last Glacial Maximum"
description: Experiments performed with LOVECLIM
DOI: 10.26190/5d0c0c0bd1f26
title: The penultimate deglaciation: protocol for PMIP4 transient numerical simulations between 140 and 127 ka, version 1.0

description: Continental ice-sheets and meltwater forcing necessary to perform transient simulations of the penultimate deglaciation. TopoIcem-140-122k.nc gives the combined ice-sheet forcing (North America, Eurasia, Greenland, and Antarctica) over the period 140ka to 122ka, needed to perform the simulations nh_abe2013_01.nc gives the Northern Hemisphere ice-sheet evolution over the period 140ka to 120ka from Abe Ouchi et al., 2013. T2-fwfFlux.txt gives the meltwater input scenarios
description: The data is described in Menviel et al., 2019, Geoscientific Model Development, "The penultimate deglaciation: protocol for PMIP4 transient numerical simulations between 140 and 127°ka, version 1.0", https://doi.org/10.5194/gmd-2019-41 as well as on the PMIP4 wiki:https://pmip4.lsce.ipsl.fr/doku.php/exp_design:degla_t2
description: https://doi.org/10.5194/gmd-2019-41
description: https://pmip4.lsce.ipsl.fr/doku.php/exp_design:degla_t2
DOI: 10.26190/5d1d47a9eb76f
title: Data for Thermophysical Properties of Urania-Zirconia (U,Zr)O2 Mixed Oxides By Molecular Dynamics

description: Input and output data of all molecular dynamics simulations performed in this study that were used to determine the thermophysical properties of (U,Zr)O2.
description: Molecular Dynamics simulation were performed with LAMMPS package. Details in manuscript 'Thermophysical Properties of Urania-Zirconia (U,Zr)O2 Mixed Oxides By Molecular Dynamics' by D.G Frost, C.O.T Galvin, M.W.D Cooper, E.G Obbard, P.A Burr
DOI: 10.26190/5d7ac7c4e8486
title: UVic ESCM outputs for Meltwater Pulse 1A

description: Surface field and time series data of model outputs in netcdf and ascii format. Related manuscript: "Assessing the spatial origin of Meltwater Pulse 1A using oxygen-isotope fingerprinting"
DOI: 10.26190/5daf74780481b
title: Tip vortex formation noise produced by wall-mounted finite airfoils with flat and rounded tip geometries

description: The data collection consists of measurements of tip vortex formation noise produced by a finite length airfoil with flat and rounded tip shape. These data were obtained using the specialist aeroacoustic test facilities at the Brandenburg University of Technology in Cottbus, Germany. Over 1200 unique test cases with variations in airfoil profile shape, tip geometry, angle of attack and Reynolds number were measured during the experimental campaign. The dataset contains raw microphone array data and data processed using Acoular, a Python module that produces acoustic maps of sound source distributions and one-third octave band tip noise spectra.
description: Acoustic measurements were performed in a quasi-anechoic open jet wind tunnel at the Brandenburg University of Technology. The airfoils used in this study have NACAxx12 profile with 0, 2, 4 and 6% camber at 40% chord and NACA00xx profile with thickness of 12, 15 and 18%. Acoustic data were obtained using a planar microphone array containing 47 microphones. Acoustic measurements were taken at Reynolds numbers based on chord of 2.5e4 to 2.25e5 and geometric angles of attack between -10 and 20 degrees.
DOI: 10.26190/5daf77c9c7f43
title: Tip vortex formation noise produced by wall-mounted finite airfoils with porous and sinusoidal tip geometries

description: The data collection consists of measurements of tip vortex formation noise produced by a finite length airfoil with porous and sinusoidal tip geometries. These data were obtained using the specialist aeroacoustic test facilities at the Brandenburg University of Technology in Cottbus, Germany. Over 2600 unique test cases with variations in airfoil tip geometry, angle of attack and Reynolds number were measured during the experimental campaign. The dataset contains raw microphone array data and data processed using Acoular, a Python module that produces acoustic maps of sound source distributions and one-third octave band tip noise spectra.
description: Acoustic measurements were performed in a quasi-anechoic open jet wind tunnel at the Brandenburg University of Technology. The airfoils used in this study have chord length of 70 mm, aspect ratio of 2, NACA0012 and NACA6412 profile and an interchangeable tip. For the NACA0012 airfoil, 11 sinusoidal tips and 8 porous tips were tested. The sinusoidal tips have amplitude of 3 to 10 mm and a wavelength of 7 to 23.3 mm. For the porous tips, porosities between 5.14 and 50.3% were achieved by varying the size and location of the pores on the tip surface. For the NACA6412 airfoil, 6 selected sinusoidal tips and 3 selected porous tips were tested. Acoustic data were obtained using a planar microphone array containing 47 microphones. Acoustic measurements were taken at Reynolds numbers based on chord of 2.5e4 to 2.25e5 and geometric angles of attack between -10 and 20 degrees.
DOI: 10.26190/unsworks/1608
title: Impact of an equatorward shift of the SH westerlies on the carbon cycle

description: A control and 4 deg equatorward SH westerly wind shift (PTB) experiments are performed with the MOM5-SIS-WOMBAT (1/4 degree horizontal resolution) model. The impact of the 4 deg equatorward SH westerly wind shift on the oceanic circulation and ocean biogeochemistry is investigated. Methods and results are described in Gray W., de Lavergne C., Wills, R.C.J., Menviel, L., Spence, P., Holzer M., Kageyama, M., Michel, E., Poleward shift in the Southern Hemisphere westerly winds synchronous with the deglacial rise in CO2, 2021, In review
description: A control and 4 deg equatorward SH westerly wind shift (PTB) experiments are performed with the MOM5-SIS-WOMBAT (1/4 degree horizontal resolution) model. MOM5-SIS-WOMBAT has a Mercator horizontal resolution of 0.25° (~11 km grid spacing at 65°S), and 50 vertical levels (Hogg et al., 2017, Menviel et al., 2018). The model is initialised with modern-day temperature and salinity distributions, and biophysical fields derived from an observation-based climatology (GLODAP v2, 2016). The model is then spun-up for 700 years with version 2 of the Coordinated Ocean-ice Reference Experiments (CORE) Normal Year Forcing (NYF) reanalysis data, representative of a ‘normal year’ during the recent instrumental period. A 4° equatorward shift (with no change in magnitude) is applied to the near surface wind speeds between 25°S and 70°S in the PTB experiment. The experiment is run for 125 years.
DOI: 10.26190/unsworks/1636
title: LGM seasonal sea ice multi-model mean for PMIP3, PMIP4 and LOVECLIM sensitivity runs

description: This dataset contains simulated sea ice multi-model mean data for both austral winter and summer during the LGM. The multi-model mean for PMIP3 contains 8 model simulations, for PMIP4 7 model simulations, and for LOVECLIM sensitivity it contains 2 model simulations. Each multi-model mean has data for austral winter and summer, yielding 6 total data files.
description: We gathered the data from either ESGF or we asked the prior author directly for their model data (if not yet published publicly).
DOI: 10.26190/unsworks/24072
title: Impact of iron fertilisation on atmospheric CO2 during the glaciation

description: The data deposited her is from climate modelling simulations run as a part of the study entitled Impact of iron fertilisation on atmospheric CO2 during the last glaciation. It is in netcdf format and consists of all climate variables required to support the manuscript.
description: Mainly, pre industrial and Marine Isotope Stage 4 (~70000 years ago) are the two climates that are simulated in this work by forcing the model with corresponding boundary conditions.
DOI: 10.26190/unsworks/24146
title: A high-resolution, 1-year, suite of 4D-Var Observing System Simulation Experiments of the East Australian Current System using the Regional Ocean Modeling System

description: This data is output from the Regional Ocean Modeling System (ROMS) simulations that comprise a suite of four 4D-Var Observing System Simulation Experiments (OSSEs) and one free-running simulation of the East Australian Current (EAC). The model has a horizontal resolution of 2.5-6 km in the cross shelf direction and 5 km in the along shelf direction, and 30 vertical s-levels. The model domain covers the southeastern Australia oceanic region from 25.1-41.5°S and 147.1-162.2°E, and the grid is orientated 20 degrees clockwise to be predominantly orientated alongshore. This zipped dataset contains model output, model forcing and configuration files and source code. The ROMS output is in the form of netcdf files. Each output file is a single data assimilation cycle (5-days), with daily averaged values. Each file contains the standard list of numerical output, including: zeta, ubar, vbar, ubar_eastward, vbar_northward, u, v, w, temp, salt, shflux, ssflux, sustr, svstr, as well as grid information. All variables in the netcdf are described with metadata. Also included are the ROMS configuration files (header and in files) required for setting up the simulations using the open-source, publically available ROMS v3.9 source code. A zip-file of the ROMS source code is included which when combined with the forcing and configuration files, can re-run the experiments. Forcing files are included for the Ref state experiment and OSSEs. Some data has been removed to reduce file size but full datasets can be obtained by contacting the authors.
description: The models (free-running and data assimilating) used to produce this output are described in Gwyther, D., Kerry, C., Roughan, M., and Keating, S. R. et al (submitted). The free-running simulation is similar to presented in https://doi.org/10.26190/TT1Q-NP46, while the data assimilating model is similar to that presented in: https://doi.org/10.26190/5ebe1f389dd87
DOI: 10.26190/unsworks/24440
title: A high-resolution, 1-year suite of 4D-Var OSSEs exploring the impact of XBT observations on state estimates of the East Australian Current

description: This data is output from the Regional Ocean Modeling System (ROMS) simulations that comprise a suite of four 4D-Var Observing System Simulation Experiments (OSSEs) of the East Australian Current (EAC). The model has a horizontal resolution of 2.5-6 km in the cross shelf direction and 5 km in the along shelf direction, and 30 vertical s-levels. The model domain covers the southeastern Australia oceanic region from 25.1-41.5°S and 147.1-162.2°E, and the grid is orientated 20 degrees clockwise to be predominantly orientated alongshore. These experiments test the impact on the state estimate and representation of the EAC in the presence of subsurface temperature (XBT) observations. Each experiment has varying observation repeat frequencies: quarterly, monthly, fortnightly and weekly. This dataset contains the temperature variable (and associated coordinates and dimensions) for the period Jan 2012 to Jan 2013. All variables in the netcdf are described with metadata. Some data has been removed to reduce file size but full datasets can be obtained by contacting the authors. The ROMS configuration files (header and in files) and the forcing files are linked in the associated dataset (https://doi.org/10.26190/unsworks/24146).
description: The models (free-running and data assimilating) used to produce this output are described in Gwyther, D., Kerry, C., Roughan, M., and Keating, S. R. et al (2022) and Gwyther, D., Keating, S. R., Kerry, C., and Roughan, M. (submitted). The free-running simulation is similar to presented in https://doi.org/10.26190/TT1Q-NP46, while the data assimilating model is similar to that presented in: https://doi.org/10.26190/5ebe1f389dd87
DOI: 10.26190/unsworks/24751
title: Data set for "AMPK activators have compound and concentration-specific effects on brain metabolism"

description: Dataset consists of NMR spectra with integrals, plus excel spreadsheets containing calculations and protein concentrations for the experiments described in the manuscript "AMPK activators have compound and concentration-specific effects on brain metabolism" published in The Journal of Neurochemistry in 2023. The NMR spectra are in Bruker format and are processed with integrals. Each sample has three spectra recorded sequentially; a fully relaxed 1H spectrum, a fully relaxed 13C-decoupled 1H spectrum and a 1H-decoupled 13C NMR spectrum. Control samples (N = 4) are first, followed by 4 samples at EC50 and 4 samples at 10 x EC 50 apart from Metformin which also has an extra 4 intermediate samples. The spreadsheets contain integrals and calculations of values including relaxation compensation factors, protein concentrations and reference to the formate standard at 2 mM.
description: Methodology is as described in the manuscript Achanta et al. (2023) AMPK activators have compound and concentration-specific effects on brain metabolism published in the Journal of Neurochemistry in 2023 (details TBA)
DOI: 10.26190/unsworks/24925
title: Acoustic Loads on Hypersonic Engines

description: The associated project aims to understand how acoustic loads are generated in supersonic combustion ramjets (scramjets) to control sonic fatigue in reusable hypersonic vehicles. <br> This knowledge promises to revolutionise flight by making space access more affordable than it is today. In this project, three aspects of flow phenomena commonly encountered in scramjet engines are being studied – shock/turbulence interaction, fuel injection in a cold supersonic cross-stream and shock/boundary layer interaction for both rigid and compliant surfaces. The intended outcomes include a better understanding of the processes above and construction of an experimental database to validate predictive simulation models that will enable the design of flight-weight reusable hypersonic vehicles. Benefits include reduced cost for access to space and the ability to design and develop advanced aerospace technology. <br> This dataset contains (1) raw high-speed video and image files (.mcf) (2) raw pressure transducer data files (.bin from PCB sensors) Complete information on the datasets can be found in the following publications:
DOI: 10.26190/unsworks/24927
title: Seismic protection of structures via magnetorheological dampers

description: The associated project for this dataset looks at understanding the aggregation of nanoparticles through computational simulations in magnetorheological dampers and other nano-scale applications. <br> The dataset itself contains a mixture of data input files for ANSYS-Fluent in the form of WPBJ files (Workbench project files for ANSYS-Fluent, CAS files (Case files for ANSYS-Fluent) and C files (User Defined Function files for ANSYS-Fluent). Data output files in the form of DAT files contain values such as X, Y, Z positions, velocity, temperature, density, viscosity, specific heat of constant pressure. <br> The dataset covers the period January 2017 to December 2018.
DOI: 10.5281/zenodo.7557413
title: Data for "Deep Generative Priors for Biomolecular 3D Heterogeneous Reconstruction from Cryo-EM Projections" Part I

description: Simulated datasets with uniformly distributed discrete states. Particle stacks, poses, CTFs and .star are available: (particle images downsampled to 256x256, original images 300x300x1.5A/pix available upon request)



One_rect: 49,973 particle images 

Two_circles: 49,761 particle images

Three_rect: 50,260 particle images


Results of aforementioned simulated datasets with:



Trained models (weights, latent encodings, config)

Reconstructed density maps for 121 discrete states (ground-truth .mrc/.pdb, LSGM-SPR result only due to space limit)

Analyze results (PCA-map, U-map, 10d z-alignment)


 

Related resources:



Original paper (Journal of Structural Biology): Deep Generative Priors for Biomolecular 3D Heterogeneous Reconstruction from Cryo-EM Projections

Github link: https://github.com/benjamin3344/DGP-SPR

Datasets part II: 10.5281/zenodo.10574539
DOI: 10.5281/zenodo.7557414
title: Data for "Deep Generative Priors for Biomolecular 3D Heterogeneous Reconstruction from Cryo-EM Projections" Part I

description: Simulated datasets with uniformly distributed discrete states. Particle stacks, poses, CTFs and .star are available: (particle images downsampled to 256x256, original images 300x300x1.5A/pix available upon request)



One_rect: 49,973 particle images 

Two_circles: 49,761 particle images

Three_rect: 50,260 particle images


Results of aforementioned simulated datasets with:



Trained models (weights, latent encodings, config)

Reconstructed density maps for 121 discrete states (ground-truth .mrc/.pdb, LSGM-SPR result only due to space limit)

Analyze results (PCA-map, U-map, 10d z-alignment)


 

Related resources:



Original paper (Journal of Structural Biology): Deep Generative Priors for Biomolecular 3D Heterogeneous Reconstruction from Cryo-EM Projections

Github link: https://github.com/benjamin3344/DGP-SPR

Datasets part II: 10.5281/zenodo.10574539
DOI: 10.25345/c53x83x23
title: MassIVE MSV000094188 - chronic_chagas_disease_anti_IFNg_anti_TGFb
title: Mice were infected with T.cruzi for 5 month and treated with anti IFNg and anti TGFb
DOI: 10.15468/mfu4hj
title: 2016_SMAVD_12

description: 2016_SMAVD-RHOPALOCERES:SMAVD
DOI: 10.15468/bxx4eb
title: 2022_Soleol_1

description: 2022_Soleol-IV_Artigues:Soleol
DOI: 10.5066/p932wq6w
title: Multi-element geochemical analyses of selected samples from the Mesoproterozoic Nonesuch Formation and Copper Harbor Conglomerate at the Copperwood copper deposit, Michigan, USA

description: This data release provides multi-element data for drill core samples from the Mesoproterozoic Nonesuch Formation and Copper Harbor Conglomerate at the Copperwood copper deposit, Michigan, USA. Gold, platinum, and palladium data were collected by fire assay; copper and silver were collected by assay; and other elements were collected by inductively coupled plasma-optical emission spectrometry (ICP-OES) or inductively coupled plasma-mass spectrometry (ICP-MS) following a digestion that used hydrochloric, nitric, perchloric and hydrofluoric acids.

The Copperwood copper deposit is a sediment-hosted stratiform copper deposit in the Presque Isle Syncline of the upper peninsula of Michigan. The deposit has a 2018 mineral resource estimate of 42.2 million metric tons (Mt) of measured plus indicated mineral resources in the Lower Copper Bearing Sequence at an average grade of 1.60 percent Cu and 3.84 grams per ton (g/t) Ag. The measured plus indicated mineral resource in the Upper Copper Bearing Sequence is estimated to be 7.1 Mt at an average grade of 1.21 percent Cu and 3.26 g/t Ag (Gignac, 2018). The mineral reserves for the Copperwood Project are estimated at 25.4 Mt at an average grade of 1.43 percent Cu and 3.83 g/t Ag (Gignac, 2018). Some sediment hosted deposits elsewhere produce significant amounts of gold, platinum, palladium, and (or) cobalt. However, in the Copperwood samples, these elements have geometric mean concentrations of 0.0022 ppm, 0.0021 ppm, 0.0029 ppm, and 24 ppm, respectively, so they are not enriched. Gallium, which is a critical mineral in the U.S., is enriched in some base metal deposits, but Copperwood samples have a geometric mean gallium concentration of 16 ppm, which is similar to average crustal concentrations. Although the data herein are limited to 34 determinations, they strongly suggest that the Copperwood copper deposit does not contain significant concentrations of byproduct critical minerals.
DOI: 10.6084/m9.figshare.20710330
title: Drag coefficient of emergent vegetation in a shallow nonuniform flow over a mobile sand bed

description: The dataset and video file describe the experimental data about bed-load transport rates in the nonuniform flow through a vegetated patch under the conditions of Q=1.8 L/s and φ=0.1. This data set is used to support the temporal variation of bed surface . It accompanies the journal article submission entitled "Drag coefficient of emergent vegetation in a shallow nonuniform flow over a mobile sand bed".
DOI: 10.6084/m9.figshare.20710330.v3
title: Drag coefficient of emergent vegetation in a shallow nonuniform flow over a mobile sand bed

description: The dataset and video file describe the experimental data about bed-load transport rates in the nonuniform flow through a vegetated patch under the conditions of Q=1.8 L/s and φ=0.1. This data set is used to support the temporal variation of bed surface . It accompanies the journal article submission entitled "Drag coefficient of emergent vegetation in a shallow nonuniform flow over a mobile sand bed".
DOI: 10.6084/m9.figshare.20710330.v2
title: Drag coefficient of emergent vegetation in a shallow, nonuniform flow over a mobile sand bed

description: The dataset and video file describe the experimental data about bed-load transport rates in the nonuniform flow through a vegetated patch under the conditions of Q=1.8 L/s and φ=0.1. This data set is used to support the temporal variation of bed surface . It accompanies the journal article submission entitled "Drag coefficient of emergent vegetation in a shallow, nonuniform flow over a mobile sand bed".
DOI: 10.15468/a8pusw
title: Liaison autoroutière concédée entre Machilly et Thonon les Bains et suppression des passages à niveau N° 65 et 66 à Perrignier Haute-Savoie - Amphibiens - Inventaire non standardisé - LPO74

description: Liste des amphibiens observés de 2011 à 2016 par la LPO74 dans le secteur de l'aire d'étude du projet de liaison autoroutière concédée entre Machilly et Thonon-les-Bains et suppression des passages à niveau N°65 et 66 à Perrignier.
DOI: 10.15468/j9ptze
title: Liaison autoroutière concédée entre Machilly et Thonon les Bains et suppression des passages à niveau N° 65 et 66 à Perrignier Haute-Savoie - Amphibiens - Inventaire non standardisé

description: Liste des amphibiens contactés dans le cadre des prospections de terrain réalisées au niveau de l'aire d'étude du projet de liaison autoroutière concédée entre Machilly et Thonon-les-Bains et suppression des passages à niveau N°65 et 66 à Perrignier.
DOI: 10.15468/3jed55
title: Ferme éolienne de l'Algoux - Chiroptères identifiés au Batcorder lors d'écoutes au sol

description: Liste des espèces de chiroptères identifiées au Batcorder lors d'écoutes au sol en 2016 dans le cadre du projet éolien de l'Algoux sur les communes de Parlan et Saint-Saury (Cantal - 15)
DOI: 10.15468/9q5nru
title: Ferme éolienne de l'Algoux - Insectes

description: Listes des espèces d'insectes identifiées au cours des inventaires de terrain en 2016 dans le cadre du projet de parc éolien de l'Algoux sur les communes de Parlan et Saint-Saury (Cantal - 15)
DOI: 10.15468/azkejj
title: Ferme éolienne de l'Algoux - Herpétofaune

description: Liste des espèces d'amphibiens et de reptiles identifiées en 2016 dans le cadre des inventaires réalisés pour le projet de parc éolien de l'Algoux sur les communes de Parlan et Saint-Saury (Cantal - 15)
DOI: 10.15468/rtzs59
title: 2018_Agence MTDA_1

description: 2018_MTDA_VOIRIOT_Grans:Agence MTDA
DOI: 10.15468/apycn2
title: 2016_Parc National du Mercantour_1

description: 2016_PNM_chiro:Parc National du Mercantour
DOI: 10.15468/pn4fwa
title: Projet éolien de Moux - étude chiroptères - suivi ponctuel

description: Les données présentées ici concernent les inventaires, réalisés dans le cadre de l'étude écologique pour le projet éolien de Moux, spécifiques au suivi ponctuel pour l'étude des chiroptères.