cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.7jmtsk
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Evolvulus kramerioides"
 ]
}

 The dataset includes 58 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026087-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5w95122v
title: MassIVE MSV000100090 - Metabolomics data for Amaranthus palmeri
title: Metabolomics data for Amaranthus palmeri under dark and light conditions
DOI: 10.15468/dl.vhnune
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Digitaria",
 "GadmGid is one of (USA.6_1, USA.17_1, USA.27_1, USA.28_1, USA.32_1, USA.35_1, USA.37_1, USA.42_1, USA.44_1, USA.51_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Machine Observation)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2014",
 "Month is greater than or equal to January",
 "Month is less than or equal to December"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026088-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2qy9jd
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ferrarisia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026089-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17807423
title: Supplemental Files for genotyping the mitochondria and ITS rDNA locus in S. haemaotbium and S. bovis collected in Nigeria

description: This dataset contains chromatograms in .ab1 format for ITS1–5.8S–ITS2 amplicons generated from Schistosoma haematobium and S. bovis parasites, primarily collected in Nigeria. We used reference profiles representing canonical S. haematobium, S. bovis, and S. curassoni ITS genotypes to classify each individual. ITS fragments (~922 bp) were amplified from the same DNA aliquots used for whole-genome sequencing using primers ETTS1 and ETTS2, visualized on 1% agarose gels, purified with ExoSAP-IT™, and Sanger sequenced (forward and reverse) by Eurofins Genomics. Chromatograms were assembled and manually edited in BioEdit, and heterozygous peaks were called using the Indigo algorithm implemented in the Tracy web platform. The resulting forward and reverse AB1 files were used to assign ITS genotypes and to classify parasites into parental, hybrid, backcross/late-generation, and complex categories based on mitochondrial and ITS two-marker schemes.

In addition to the ITS chromatograms, we provide de novo mitochondrial genome assemblies for each sample with sufficient mitochondrial coverage in FASTA format, a trimmed multiple sequence alignment of these mitogenomes in FASTA format, and the corresponding maximum-likelihood phylogeny in Newick format with bootstrap support values. Briefly, mitochondrial reads were identified by mapping whole-genome data to a reference panel of schistosome mitochondrial genomes, and de novo assemblies were generated with get_organelle_from_reads and scaffolded against the reference panel. The largest contiguous mitochondrial scaffold per sample was aligned, low-confidence regions were trimmed using trimAl with an automated model, and a mitochondrial phylogeny was inferred and support estimated with RAxML-ng.
DOI: 10.5281/zenodo.17807424
title: Supplemental Files for genotyping the mitochondria and ITS rDNA locus in S. haemaotbium and S. bovis collected in Nigeria

description: This dataset contains chromatograms in .ab1 format for ITS1–5.8S–ITS2 amplicons generated from Schistosoma haematobium and S. bovis parasites, primarily collected in Nigeria. We used reference profiles representing canonical S. haematobium, S. bovis, and S. curassoni ITS genotypes to classify each individual. ITS fragments (~922 bp) were amplified from the same DNA aliquots used for whole-genome sequencing using primers ETTS1 and ETTS2, visualized on 1% agarose gels, purified with ExoSAP-IT™, and Sanger sequenced (forward and reverse) by Eurofins Genomics. Chromatograms were assembled and manually edited in BioEdit, and heterozygous peaks were called using the Indigo algorithm implemented in the Tracy web platform. The resulting forward and reverse AB1 files were used to assign ITS genotypes and to classify parasites into parental, hybrid, backcross/late-generation, and complex categories based on mitochondrial and ITS two-marker schemes.

In addition to the ITS chromatograms, we provide de novo mitochondrial genome assemblies for each sample with sufficient mitochondrial coverage in FASTA format, a trimmed multiple sequence alignment of these mitogenomes in FASTA format, and the corresponding maximum-likelihood phylogeny in Newick format with bootstrap support values. Briefly, mitochondrial reads were identified by mapping whole-genome data to a reference panel of schistosome mitochondrial genomes, and de novo assemblies were generated with get_organelle_from_reads and scaffolded against the reference panel. The largest contiguous mitochondrial scaffold per sample was aligned, low-confidence regions were trimmed using trimAl with an automated model, and a mitochondrial phylogeny was inferred and support estimated with RAxML-ng.
DOI: 10.15468/dl.abmvv5
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Chlorospatha bayae"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026091-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17807529
title: Test data for Galaxy
DOI: 10.15468/dl.ym68st
title: Occurrence Download

description: A dataset containing 7321 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is one of (Asia, Europe)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Coccinella septempunctata"
 ]
}

 The dataset includes 7321 records from 139 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026090-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q2d37a
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Chlorospatha betancurii"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026092-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17644782
title: Analysis of Tourism and Environmental Recovery at destination with Mixed Method Analysis
title: Análisis del turismo y la recuperación medioambiental en destinos turísticos mediante métodos mixtos

description: Three databases. The first, in Excel XLSX format, corresponds to Study 1 in the publication. The second (Study2-Expert Group) is a text document containing the responses of experts following in-depth personal interviews. The third (Study3-Field Group) is also a text document containing the questions posed to the Field Group.
DOI: 10.5281/zenodo.17644781
title: Analysis of Tourism and Environmental Recovery at destination with Mixed Method Analysis
title: Análisis del turismo y la recuperación medioambiental en destinos turísticos mediante métodos mixtos

description: Three databases. The first, in Excel XLSX format, corresponds to Study 1 in the publication. The second (Study2-Expert Group) is a text document containing the responses of experts following in-depth personal interviews. The third (Study3-Field Group) is also a text document containing the questions posed to the Field Group.
DOI: 10.15468/dl.awh4vq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Diodia teres",
 "GadmGid is one of (USA.6_1, USA.17_1, USA.27_1, USA.28_1, USA.32_1, USA.35_1, USA.37_1, USA.42_1, USA.44_1, USA.51_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Machine Observation)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2014",
 "Month is greater than or equal to January",
 "Month is less than or equal to December"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026093-251120083545085/datasets/export for details.
DOI: 10.15468/dl.9gp9ap
title: Occurrence Download

description: A dataset containing 762 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neocatenulostroma",
 "HasCoordinate is true"
 ]
}

 The dataset includes 762 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026095-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m3abjq
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Chlorospatha bullata"
 ]
}

 The dataset includes 17 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026094-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.s6pcdfqx
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.15468/dl.6cwbg8
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Diodia virginiana",
 "GadmGid is one of (USA.6_1, USA.17_1, USA.27_1, USA.28_1, USA.32_1, USA.35_1, USA.37_1, USA.42_1, USA.44_1, USA.51_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Machine Observation)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2014",
 "Month is greater than or equal to January",
 "Month is less than or equal to December"
 ]
}

 The dataset includes 27 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026096-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cjsv86
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acervuloseptoria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026097-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26021/canterburynz.30768455
title: McMurdo Sound GNSS Files 2024/2025

description: This dataset is provided in support of the submission of manuscript <i>Ice dynamics in McMurdo Sound, Antarctica, based on precise </i><i>synthetic aperture radar interferometry analysis. </i>It provides the GNSS files used for the analysis.<br><br><br>
DOI: 10.26021/canterburynz.30768455.v2
title: McMurdo Sound GNSS Files 2024/2025

description: This dataset is provided in support of the submission of manuscript <i>Ice dynamics in McMurdo Sound, Antarctica, based on precise </i><i>synthetic aperture radar interferometry analysis. </i>It provides the GNSS files used for the analysis.<br><br><br>
DOI: 10.26021/canterburynz.30768455.v1
title: McMurdo Sound GNSS Files 2024/2025

description: This dataset is provided in support of the submission of manuscript <i>Ice dynamics in McMurdo Sound, Antarctica, based on precise </i><i>synthetic aperture radar interferometry analysis. </i>It provides the GNSS files used for the analysis.<br><br><br>
DOI: 10.5281/zenodo.17806711
title: Dual Engine IA Framework 2.0

description: Le Dual Engine IA Framework 2.0 — Édition Spatiale et Astrophysique est un système de raisonnement et de calcul scientifique à double moteur conçu pour la recherche en aérospatiale, en astrophysique et en génie nucléaire.

Elle fournit une architecture TRL7 validée intégrant des moteurs sémantiques et non sémantiques pour la modélisation multi-échelle, l'extraction d'invariants et la simulation multi-domaine.

Ce cadre permet un raisonnement traçable, une modélisation analogique vérifiable et une analyse fractale-topologique de systèmes complexes selon des normes de reproductibilité scientifique (compatibles ECSS/IEEE).

 

Version actuelle TRL7 — validée sur des ensembles de données réels et prête pour la qualification externe TRL8.

Les prochaines versions (2.1) incluront des modules de microphysique biologique et nucléaire (intégration Zoran & Skopein IA).
DOI: 10.15468/dl.4vhzm5
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Chlorospatha caldasensis"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026098-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17804829
title: GenBank Accession Numbers of Genomic Introgression and Adaptation of Southern Seabird Species Facilitate Recent Polar Colonization

description: This dataset contains the 111 SRA and BioSample accession numbers of raw FASTQ reads related to skua individuals used for genomic analyses. Information on locality, geographic region, decimal latitude, decimal longitude, collection date, sample code, sample type, and life stage is also included.
description: Genomic adaptation and introgression can occur during the speciation process, enabling species to diverge in their frequencies of adaptive alleles or acquire new alleles that may promote adaptation to environmental changes. There is limited information on introgression in organisms from extreme environments and their responses to climate change. To address these questions, we focused on the 3 southern skua species, selected for their widespread distribution across the Southern Hemisphere and their complex history of speciation and introgression events. Our genomic data reveal that these skuas underwent diversification around the Penultimate Glacial Period, followed by subsequent demographic expansion. We identified a geographic region of introgression among species that followed a directional pattern sourced from the Antarctic continent, South America, and east to west in subantarctic islands, all converging towards the Antarctic Peninsula. The 3 skua species and admixed individuals exhibited a unique pattern of putative genes under selection, allowing adaptation to extreme conditions. Individuals with a higher proportion of Brown Skua ancestry showed signs of selection on genes related to reproductive isolation, while admixed individuals with a higher proportion of South Polar Skua ancestry displayed patterns resembling those of the South Polar Skua. Introgression may be a key mechanism of adaptation for many species that may help buffer against the ongoing climate change.
DOI: 10.5281/zenodo.17804830
title: GenBank Accession Numbers of Genomic Introgression and Adaptation of Southern Seabird Species Facilitate Recent Polar Colonization

description: This dataset contains the 111 SRA and BioSample accession numbers of raw FASTQ reads related to skua individuals used for genomic analyses. Information on locality, geographic region, decimal latitude, decimal longitude, collection date, sample code, sample type, and life stage is also included.
description: Genomic adaptation and introgression can occur during the speciation process, enabling species to diverge in their frequencies of adaptive alleles or acquire new alleles that may promote adaptation to environmental changes. There is limited information on introgression in organisms from extreme environments and their responses to climate change. To address these questions, we focused on the 3 southern skua species, selected for their widespread distribution across the Southern Hemisphere and their complex history of speciation and introgression events. Our genomic data reveal that these skuas underwent diversification around the Penultimate Glacial Period, followed by subsequent demographic expansion. We identified a geographic region of introgression among species that followed a directional pattern sourced from the Antarctic continent, South America, and east to west in subantarctic islands, all converging towards the Antarctic Peninsula. The 3 skua species and admixed individuals exhibited a unique pattern of putative genes under selection, allowing adaptation to extreme conditions. Individuals with a higher proportion of Brown Skua ancestry showed signs of selection on genes related to reproductive isolation, while admixed individuals with a higher proportion of South Polar Skua ancestry displayed patterns resembling those of the South Polar Skua. Introgression may be a key mechanism of adaptation for many species that may help buffer against the ongoing climate change.
DOI: 10.15468/dl.xeztd2
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dipsacus",
 "GadmGid is one of (USA.6_1, USA.17_1, USA.27_1, USA.28_1, USA.32_1, USA.35_1, USA.37_1, USA.42_1, USA.44_1, USA.51_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Machine Observation)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2014",
 "Month is greater than or equal to January",
 "Month is less than or equal to December"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026099-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8zjsbx
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sirodesmium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026100-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e74mxa
title: Occurrence Download

description: A dataset containing 5698 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Artibeus obscurus"
 ]
}

 The dataset includes 5698 records from 153 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026101-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rngdyt
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dreissena polymorpha",
 "GadmGid is one of (USA.6_1, USA.17_1, USA.27_1, USA.28_1, USA.32_1, USA.35_1, USA.37_1, USA.42_1, USA.44_1, USA.51_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Machine Observation)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2014",
 "Month is greater than or equal to January",
 "Month is less than or equal to December"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026102-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cv8vtw
title: Occurrence Download

description: A dataset containing 121 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tremateia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 121 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026103-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jcpwqg
title: Occurrence Download

description: A dataset containing 1891 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is El Género Phaseolus (Leguminosae, Papilionoideae, Phaseoleae) para México"
 ]
}

 The dataset includes 1891 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026104-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gnww2h
title: Occurrence Download

description: A dataset containing 752736 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2025-10-08",
 "EventDate is less than or equal to 2025-11-07",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 },
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 752736 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026086-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.433g7q
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Chlorospatha caliensis"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026105-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mp5y7t
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Chlorospatha callejasii"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026106-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.