cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7547703
title: DeepGeoStat WP5 Solar Panel Trained Network

description: This dataset contains the weights of a convolutional neural network (CNN) trained to recognize the presence of solar panels on aerial photos. In particular, it contains the saved state of a ResNet50 CNN that has been trained on a dataset containing annotated high-resolution aerial images of two regions in the south of the Netherlands. Many photos in this dataset have been annotated multiple times, and the annotations are not always unanimous. The dataset of aerial images together with annotations can be downloaded from here. The model for detecting whether solar panels are present in aerial photos has been developed under the DeepSolaris and DeepGeoStat projects. Corresponding Pytorch code can be found here. The code also demonstrates how to load the saved state into a ResNet50 model, and use it for detecting solar panels on aerial photos. This research was conducted under: ESS action 'Merging Geostatistics and Geospatial Information in Member States' (grant agreement no.: 08143.2017.001-2017.408), ESS topic B5674-2020-GEOS (project 101033951 2020-NL-GEOS-DEEP-GEO-STAT), a research program of Statistics Netherlands (https://www.cbs.nl)
DOI: 10.5281/zenodo.7551799
title: DeepStat WP5 Solar Panel Dataset

description: The DeepSolaris/ DeepGeoStat dataset was developed in two projects with the same names, during the period 2017 - 2022. The dataset contains 20m x 20m cutouts from an aerial image of the Netherlands. Multiple annotators labeled each cutout for the presence or absence of solar panels. The dataset can be used to train machine or deep learning models on a solar panel classification task. The dataset contains cutouts from the 2018 high-resolution (DOP 10) aerial image of the Netherlands. Each cutout is 200x200 pixels which translates to a 20m x 20m grid. Cutouts were sampled from two nearby regions in the Netherlands: 1. The region around the city of <em>Heerlen</em> 2. The region around the city of <em>Valkenburg</em> Between both regions, a 100m strip was left free in which no cutouts were sampled. Both image subsets are therefore independent of each other. In total 26 annotators, annotated 63258 unique pictures with 200795 annotations; 34523 positive annotations indicating that the annotator saw a solar panel in the image, and 166272 negatives indicating that the annotator didn't see a solar panel in the image. More information can be found in the README.md in the archive. Python source code for training models on this dataset can be found here: https://gitlab.com/CBDS/deepgeostat-wp-5. PyTorch weights for a trained model can be found here: https://zenodo.org/record/7547703#.Y8l0phPMLap. This research was conducted under: the ESS action 'Merging Geostatistics and Geospatial Information in Member States' (grant agreement no.: 08143.2017.001-2017.408), under the ESS topic B5674-2020-GEOS (project 101033951 2020-NL-GEOS-DEEP-GEO-STAT), an investment of [Statistics Netherlands](https://www.cbs.nl) for the development of Deep Learning models, practices, and methodology. The researchers want to furthermore thank everyone involved in helping to create and annotate this dataset.
DOI: 10.6084/m9.figshare.21621210
title: Supplementary Material for: The First-Year Variation in Central Retinal Thickness Predicts Legal Blindness in Patients with Neovascular Age-Related Macular Degeneration

description: Abstract Background: Due to its progressive nature, early evaluation and timely prediction of legal blindness are important in patients with neovascular age-related macular degeneration (nAMD). We examined the association between early-stage variation in central retinal thickness (CRT) and long-term visual outcomes in patients with nAMD. Methods: We included 103 nAMD patients who were administered anti-vascular endothelial growth factor (anti-VGEF). Participants were considered qualified if they were: 1) 50 years and older, 2) treatment-naïve, 3) received standard anti-VEGF treatment and had complete baseline information. We further excluded patients with less than one-year follow-up data and those who experienced best-corrected visual acuity (BCVA) ≤35. Early-stage variability in CRT was measured as the first-year coefficient of variability (CV) of CRT. Patients were then classified into the high-variability and the low-variability groups according to the X-tile. A product-limit plot was used to demonstrate the differences and tested with the log-rank test. The association between first-year variability and visual outcomes was quantified using Cox regression models. Time-to-event primary endpoint was the overall visual preservation (OVP) rate, defined as the time from the first injection to legal blindness, i.e., BCVA ≤ 35 Early Treatment Diabetic Retinopathy Study (ETDRS) letters. Results: A threshold of 20% of first-year CV in CRT was used to categorized 76 qualified patients into high-variability (35, 46.1%) and low-variability (41, 53.9%). The 5- and 10-year OVPs for patients with high- vs. low-variability were 76% vs. 48%, and 59% vs. 22%, respectively. High early-stage CRT variability showed a significantly higher risk of legal blindness. Even after adjusting for the demographic and clinical features, the variability remained significant (HR=2.39, 95% CI: 1.20 to 4.78). Conclusions: First-year variability of CRT was predictive of long-term visual outcomes in patients with nAMD, and 20% of the variability could be used as a clinically convenient threshold to qualitatively classify patients into high- and low-variability groups. The current study is important for identifying high-risk populations and for long-term disease management.
DOI: 10.6084/m9.figshare.21621210.v1
title: Supplementary Material for: The First-Year Variation in Central Retinal Thickness Predicts Legal Blindness in Patients with Neovascular Age-Related Macular Degeneration

description: Abstract Background: Due to its progressive nature, early evaluation and timely prediction of legal blindness are important in patients with neovascular age-related macular degeneration (nAMD). We examined the association between early-stage variation in central retinal thickness (CRT) and long-term visual outcomes in patients with nAMD. Methods: We included 103 nAMD patients who were administered anti-vascular endothelial growth factor (anti-VGEF). Participants were considered qualified if they were: 1) 50 years and older, 2) treatment-naïve, 3) received standard anti-VEGF treatment and had complete baseline information. We further excluded patients with less than one-year follow-up data and those who experienced best-corrected visual acuity (BCVA) ≤35. Early-stage variability in CRT was measured as the first-year coefficient of variability (CV) of CRT. Patients were then classified into the high-variability and the low-variability groups according to the X-tile. A product-limit plot was used to demonstrate the differences and tested with the log-rank test. The association between first-year variability and visual outcomes was quantified using Cox regression models. Time-to-event primary endpoint was the overall visual preservation (OVP) rate, defined as the time from the first injection to legal blindness, i.e., BCVA ≤ 35 Early Treatment Diabetic Retinopathy Study (ETDRS) letters. Results: A threshold of 20% of first-year CV in CRT was used to categorized 76 qualified patients into high-variability (35, 46.1%) and low-variability (41, 53.9%). The 5- and 10-year OVPs for patients with high- vs. low-variability were 76% vs. 48%, and 59% vs. 22%, respectively. High early-stage CRT variability showed a significantly higher risk of legal blindness. Even after adjusting for the demographic and clinical features, the variability remained significant (HR=2.39, 95% CI: 1.20 to 4.78). Conclusions: First-year variability of CRT was predictive of long-term visual outcomes in patients with nAMD, and 20% of the variability could be used as a clinically convenient threshold to qualitatively classify patients into high- and low-variability groups. The current study is important for identifying high-risk populations and for long-term disease management.
DOI: 10.15151/esrf-es-1040128824
title: The local structure and valence electronic states in superconducting TrZr2 (Tr = transition metals) high entropy alloys

description: Recent discovery of superconducting high entropy alloys has stimulated several experimental studies with a new hope for the applications of superconductivity. In general, the configuration entropy in these superconductors induces robustness of the superconducting state, however it is still to be explored the cause of this peculiar robustness. In this proposal, we plan to study the local structure of superconducting TrZr2-type (Tr = transition metal) high entropy alloys using temperature dependent x-ray absorption fine structure measurements. The results are expected to provide important information on the correlation between the local disorder and superconductivity for controlling applications oriented properties of these materials.
DOI: 10.6084/m9.figshare.21940037
title: Supplementary Material for: OXIS contacts and approximal caries in preschool children- A prospective cohort study

description: The present prospective cohort study was conducted to evaluate the susceptibility of OXIS contact areas namely O (open type), X (point type), I (straight type) and S (curved type) in the development of approximal caries. We conducted this study among 953 school children with 3812 contacts in Puducherry, India. At baseline, the contacts were assessed in accordance with OXIS criteria. At the end of 12 months, two calibrated dentists measured dental caries following the International Caries Detection and Assessment (ICDAS) criteria. Information about feeding practices, diet, and oral hygiene was collected by means of a structured questionnaire from each child’s parent. Data were analyzed by unadjusted and adjusted Poisson regression analysis with a multilevel approach. The two levels of analysis were tooth and child. Of 3,812 contacts observed during the follow-up, 127 (3.3%) were observed as carious. Poisson regression analysis revealed a significant association between type of contact and caries prevalence (p &lt; 0.05). The risk ratios for the development of approximal caries in X contacts were 2.4 (0.3-17.2), p value 0.38; in I contacts - 4.9 (1.2-19.9), p value 0.027; and in S contacts 8.2 (1.9-34.2), p value 0.004, when compared with the O contacts. Among the child variables, male gender (RR=2.1; 95%CI-1.3,3.5), parental supervision while toothbrushing (RR=1.6; 95%CI-1.1,2.4) and the use of toothpaste (RR=1.9; 95%CI-1.3,3.1) were found to be associated with approximal caries after adjustment for the other variables. Among the OXIS contacts, the S type was most susceptible to approximal caries due to its complex morphology, followed by I, X, and O.
DOI: 10.6084/m9.figshare.21940037.v1
title: Supplementary Material for: OXIS contacts and approximal caries in preschool children- A prospective cohort study

description: The present prospective cohort study was conducted to evaluate the susceptibility of OXIS contact areas namely O (open type), X (point type), I (straight type) and S (curved type) in the development of approximal caries. We conducted this study among 953 school children with 3812 contacts in Puducherry, India. At baseline, the contacts were assessed in accordance with OXIS criteria. At the end of 12 months, two calibrated dentists measured dental caries following the International Caries Detection and Assessment (ICDAS) criteria. Information about feeding practices, diet, and oral hygiene was collected by means of a structured questionnaire from each child’s parent. Data were analyzed by unadjusted and adjusted Poisson regression analysis with a multilevel approach. The two levels of analysis were tooth and child. Of 3,812 contacts observed during the follow-up, 127 (3.3%) were observed as carious. Poisson regression analysis revealed a significant association between type of contact and caries prevalence (p &lt; 0.05). The risk ratios for the development of approximal caries in X contacts were 2.4 (0.3-17.2), p value 0.38; in I contacts - 4.9 (1.2-19.9), p value 0.027; and in S contacts 8.2 (1.9-34.2), p value 0.004, when compared with the O contacts. Among the child variables, male gender (RR=2.1; 95%CI-1.3,3.5), parental supervision while toothbrushing (RR=1.6; 95%CI-1.1,2.4) and the use of toothpaste (RR=1.9; 95%CI-1.3,3.1) were found to be associated with approximal caries after adjustment for the other variables. Among the OXIS contacts, the S type was most susceptible to approximal caries due to its complex morphology, followed by I, X, and O.
DOI: 10.6084/m9.figshare.21931875
title: ProjecTILs human reference atlas of CD8+ tumor-infiltrating T cells, version 1

description: ProjecTILs human reference atlas of CD8+ tumor-infiltrating T cells, generated by semi-supervised STACAS integration of scRNA-seq datasets spanning 7 cancer types. <br> The dataset is available as a Seurat object, with functional cluster, sample of origin and several other measurement for each cell stored in the object metadata. The object can be loaded into an R session using the readRDS() function, and directly used as a reference atlas for ProjecTILs (Andreatta et al. 2021). <br> Code to reproduce the atlas can be found here: https://github.com/carmonalab/human_TIL_atlas
DOI: 10.6084/m9.figshare.21931875.v1
title: ProjecTILs human reference atlas of CD8+ tumor-infiltrating T cells, version 1

description: ProjecTILs human reference atlas of CD8+ tumor-infiltrating T cells, generated by semi-supervised STACAS integration of scRNA-seq datasets spanning 7 cancer types. <br> The dataset is available as a Seurat object, with functional cluster, sample of origin and several other measurement for each cell stored in the object metadata. The object can be loaded into an R session using the readRDS() function, and directly used as a reference atlas for ProjecTILs (Andreatta et al. 2021). <br> Code to reproduce the atlas can be found here: https://github.com/carmonalab/human_TIL_atlas
DOI: 10.6084/m9.figshare.21651440
title: Data from "Can the mass of plastic ingested by seabirds be predicted by the number of ingested items?"

description: Data on the mass and number of ingested plastics by 11 species of seabird.
DOI: 10.6084/m9.figshare.21651440.v1
title: Data from "Can the mass of plastic ingested by seabirds be predicted by the number of ingested items?"

description: Data on the mass and number of ingested plastics by 11 species of seabird.
DOI: 10.5281/zenodo.7560456
title: OSCAR Focus Group 1 and 2 Reports

description: The OSCAR project aims to offer a novel set of online learning and mentoring tools to researchers across Europe in the areas of mental well-being and career development. This work is based on a personalized, state of the art, labour market information based, and Artificial Intelligence (AI) enabled learning recommender that is complemented with expert (career and mental health) driven online mentoring. This document details the focus group discussions aimed at generating feedback on concepts used in the OSCAR's researcher well-being and career development training and mentoring programme. More information on the project: http://oscar-ai.eu/ Learning and mentoring platform: http://edoer.eu/ Mental health training programme: https://labs.tib.eu/edoer/en/dashboard/discovery/jobs/99
description: The OSCAR project and this deliverable was supported by the European Commission Erasmus Plus programme. Project id: 2020-1-DE01-KA203-005713
DOI: 10.5281/zenodo.7560455
title: OSCAR Focus Group 1 and 2 Reports

description: The OSCAR project aims to offer a novel set of online learning and mentoring tools to researchers across Europe in the areas of mental well-being and career development. This work is based on a personalized, state of the art, labour market information based, and Artificial Intelligence (AI) enabled learning recommender that is complemented with expert (career and mental health) driven online mentoring. This document details the focus group discussions aimed at generating feedback on concepts used in the OSCAR's researcher well-being and career development training and mentoring programme. More information on the project: http://oscar-ai.eu/ Learning and mentoring platform: http://edoer.eu/ Mental health training programme: https://labs.tib.eu/edoer/en/dashboard/discovery/jobs/99
description: The OSCAR project and this deliverable was supported by the European Commission Erasmus Plus programme. Project id: 2020-1-DE01-KA203-005713
DOI: 10.5522/04/21930753.v1
title: WEISS Laparoscope Calibration Study Dataset

description: Laparoscope calibration data used in paper 'Evaluation of a calibration rig for stereo laparoscopes'. <br> The dataset comprises 60 separate data collections, using a Viking 3D laparoscope and NDI optical tracker, where each one contains 10 stereo image pairs, alongside tracking data for the laparoscope and calibration target. <br> Data was collected using a calibration rig, and in 'freehand' mode, for two calibration targets (ChAruCo markers and dot grid). <br> <br> <br>
DOI: 10.5522/04/21930753
title: WEISS Laparoscope Calibration Study Dataset

description: Laparoscope calibration data used in paper 'Evaluation of a calibration rig for stereo laparoscopes'. <br> The dataset comprises 60 separate data collections, using a Viking 3D laparoscope and NDI optical tracker, where each one contains 10 stereo image pairs, alongside tracking data for the laparoscope and calibration target. <br> Data was collected using a calibration rig, and in 'freehand' mode, for two calibration targets (ChAruCo markers and dot grid). <br> <br> <br>
DOI: 10.6084/m9.figshare.21939977
title: Bacterial and fungal communities

description: The data was obtained from metagenomic studies of rhizospheric soil in three counties (Nyamira, Kisii and Embu) in Kenya. Fungal and bacterial diversity was determined from the various soil samples collected from these regions.
DOI: 10.6084/m9.figshare.21939977.v1
title: Bacterial and fungal communities

description: The data was obtained from metagenomic studies of rhizospheric soil in three counties (Nyamira, Kisii and Embu) in Kenya. Fungal and bacterial diversity was determined from the various soil samples collected from these regions.
DOI: 10.18728/igb-fred-813.1
title: Demnitz Isotope Hydrological Data

description: Meteorological data were measured at Hasenfelde - reported here as hourly data - Wind speed, air temperature, air pressure, humidity, precipitation, radiation Precipitation isotopes - Daily samples at Hasenfelde - Weekly samples at various locations (stream locations) in the catchment Throughfall and throughfall isotopes - Taken at soil moisture measurement sites - weekly samples Discharge - Daily measurements reported at Demnitz Mill (and rating curve) and Berkenbruck Groundwater Level at 5 locations - Elevation of surface, below ground, bottom of well, and time-series of water level (translated to m a.s.l.) Groundwater isotopes at 5 locations - Roughly monthly samples at various locations in the catchment, spread through the center and south reaches of catchment Soil Moisture - Measured at 2 locations (Forest A and Grass A) at 3 depths 20,60, and 100cm with soil temperature at each depth Soil Isotopes - Measured through bulk soil sampling at locations (Forest A and Grass A) at multiple depths - Depth ranges indicate bulk soil samples taken between specified depths Sapflow - Measured average sapflow of forest stand at Forest A Vegetation Isotopes <br><br>- Twig samples were taken from (Forest A) woody vegetation and analyzed using cryogenic extraction techniques. GIS Data - Please see the "GeoNode References" section in the metadata.
DOI: 10.3886/e157781v1-131960
title: Data and Code for: Rebel on the Canal: Rebel on the Canal: Disrupted Trade Access and Social Conflict in China, 1650-1911

description: This paper examines the effects of the abandonment of China's Grand Canal --- the world's largest and oldest artificial waterway --- which served as a disruption to regional trade access. Using an original dataset covering 575 counties over 262 years, we show that the canal's abandonment contributed to the social turmoil that engulfed North China in the nineteenth century. Counties along the canal experienced an additional 117% increase in rebelliousness after the canal's closure relative to their non-canal counterparts. Our findings highlight the important role that continued access to trade routes plays in reducing conflict.
description: Counties in Zhili, Shandong, Henan, Anhui, Zhejiang, and Jiangsu provinces as of 1820. Smallest Geographic Unit: county
DOI: 10.5281/zenodo.7358799
title: Jeu de notices en UNIMARC conforme au modèle IFLA LRM - format .mrc

description: Jeu de données créé et publié par le groupe Systèmes & Données de la Transition bibliographique et mis à disposition afin de tester les imports de notices d'entités (œuvres, expressions, manifestations, items) dans les systèmes et afin de permettre des développements pour des interfaces publiques et/ou professionnelles permettant la création de données dans un catalogue par entité et leur exploitation. Jeu de données au format texte, extension .mrc. Pour assistance ou discussion autour du jeu de données ou d'expérimitations menées à partir de celui-ci, il est possible de contacter le groupe Systèmes & Données via le formulaire de contact du site de la Transition bibliographique en sélectionnant le sujet "Utilisation du jeu de données en UNIMARC conforme à IFLA LRM".
DOI: 10.5281/zenodo.7358336
title: Jeu de notices en UNIMARC conforme au modèle IFLA LRM - format .mrk

description: Jeu de données créé et publié par le groupe Systèmes & Données de la Transition bibliographique et mis à disposition afin de tester les imports de notices d'entités (œuvres, expressions, manifestations, items) dans les systèmes et afin de permettre des développements pour des interfaces publiques et/ou professionnelles permettant la création de données dans un catalogue par entité et leur exploitation. Jeu de données au format texte, extension .mrk. Pour assistance ou discussion autour du jeu de données ou d'expérimitations menées à partir de celui-ci, il est possible de contacter le groupe Systèmes & Données via le formulaire de contact du site de la Transition bibliographique en sélectionnant le sujet "Utilisation du jeu de données en UNIMARC conforme à IFLA LRM".
DOI: 10.6084/m9.figshare.21940094
title: Chapter4_700_lncRNAs

description: 700_lncRNAs
DOI: 10.6084/m9.figshare.21940094.v1
title: Chapter4_700_lncRNAs

description: 700_lncRNAs
DOI: 10.6084/m9.figshare.21940120
title: OSTEOLOGY AND RELATIONSHIPS OF <i>CUMNORIA PRESTWICHII</i> (ORNITHISCHIA: ORNITHOPODA) FROM THE LATE JURASSIC OF OXFORDSHIRE, UK

description: The iguanodontian dinosaurs have a fossil record that extends from the Middle Jurassic to the end of the Cretaceous, by which time they had diversified to become the dominant herbivores of Laurasian ecosystems. They are historically important because fossils of British iguanodontians were among the first to be recognised as the gigantic reptiles that formed the basis for naming Dinosauria. However, the early stages of their evolution remain obscure because of a sparse fossil record, and taxonomic and systematic controversies among non-hadrosaurid iguanodontians abound. In order to shed light on the early stages of iguanodontian evolution, new discoveries and re-interpretations of historic specimens are crucial. Here, we redescribe the Late Jurassic early-branching iguanodontian <i>Cumnoria prestwichii</i> from the Kimmeridge Clay Formation of Oxfordshire, UK, and assess its phylogenetic position. We find that <i>Cumnoria</i> is distinct from the North American taxon <i>Camptosaurus</i>, with which it was previously synonymized, and is valid, possessing two autapomorphies of the pectoral girdle. We recover its phylogenetic position as a non-ankylopollexian iguanodontian. <i>Cumnoria</i> represents one of just four valid ornithopod taxa from the Jurassic of Europe.