cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.npmhbd
title: Occurrence Download

description: A dataset containing 750 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sisyrinchium scabrum Schltdl. & Cham."
 ]
}

 The dataset includes 750 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003395-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.brx11v
title: Occurrence Download

description: A dataset listing the 65 species recorded in GBIF matching the query:
{
 "and" : [
 "Year 2002-2019",
 "Geometry POLYGON((116.35146 -21.08339,121.92636 -21.08339,121.92636 -19.62387,116.35146 -19.62387,116.35146 -21.08339))",
 "TaxonKey is Natator depressus (Garman, 1880)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 65 records were derived from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006781-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.abrd91
title: Occurrence Download

description: A dataset containing 140656 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "Geometry POLYGON((-119.36 -63.35,-119.36 -11.96,-8.61 -11.96,-8.61 -63.35,-119.36 -63.35))",
 "HasGeospatialIssue is false",
 "Year is 2013"
 ]
}

 The dataset includes 140656 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050467-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zpjmut
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Macroclinium manabinum (Dodson) Dodson"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0171526-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.o6hazc
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psilocybe mexicana R.Heim"
 ]
}

 The dataset includes 27 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006784-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ppgibb
title: Occurrence Download

description: A dataset containing 279663 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "Geometry POLYGON((-119.36 -63.35,-119.36 -11.96,-8.61 -11.96,-8.61 -63.35,-119.36 -63.35))",
 "HasGeospatialIssue is false",
 "Year is 2015"
 ]
}

 The dataset includes 279663 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050469-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5uapvv
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Masdevallia brockmuelleri Luer"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0171527-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zuaevk
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lippia linearifolia Moldenke"
 ]
}

 The dataset includes 9 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0171525-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sei7ya
title: Occurrence Download

description: A dataset containing 112115 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "Geometry POLYGON((-99.62 -8.08,-99.62 9.47,-71.94 9.47,-71.94 -8.08,-99.62 -8.08))",
 "HasGeospatialIssue is false",
 "Year is 2013"
 ]
}

 The dataset includes 112115 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050475-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ewd58u
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erythrodiplax cleopatra Ris, 1911"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006785-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dvyqdp
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anacyclus ×alboranensis Esteve & Varo",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 23 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050477-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.986nwe
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is DNK.3.1_1",
 "TaxonKey is Saxifraga hirculus L."
 ]
}

 The dataset includes 55 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0206589-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jafzpb
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Occurrence evidence)",
 "Country is Greece",
 "OccurrenceStatus is Present",
 "TaxonKey is Psittacula krameri (Scopoli, 1769)",
 "Year 1990-2022"
 ]
}

 The dataset's 1 records were derived from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104797-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tb9t5z
title: Occurrence Download

description: A dataset containing 302 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lampropeltis annulata Kennicott, 1860"
 ]
}

 The dataset includes 302 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0290799-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w2qyxn
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bulbophyllum santosii Ames"
 ]
}

 The dataset includes 16 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104835-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dh33sc
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia sewerzowii (Prokh.) Pavlov"
 ]
}

 The dataset includes 19 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0206575-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.74xyrp
title: Occurrence Download

description: A dataset containing 2445 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orthrosanthus chimboracensis (Kunth) Baker"
 ]
}

 The dataset includes 2445 records from 149 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014811-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.avqnpj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bulbophyllum santoense J.J.Verm."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104833-230224095556074/datasets/export for details.
DOI: 10.15468/dl.jfxhhx
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptobrachella pallida (Rowley, Tran, Le, Dau, Peloso, Nguyen, Hoang, Nguyen & Ziegler, 2016)"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0303042-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bgxegp
title: Occurrence Download

description: A dataset containing 3032 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salamandrella keyserlingii Dybowski, 1870"
 ]
}

 The dataset includes 3032 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104854-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g9unkd
title: Occurrence Download

description: A dataset containing 7037 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chara virgata Kütz)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 7037 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0236244-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p2b39m
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salvia himmelbaurii E.Peter"
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104845-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cc4d7q
title: Occurrence Download

description: A dataset containing 16707680 species occurrences available in GBIF matching the query:
{
 "Continent" : [
 "is South America"
 ]
}

 The dataset includes 16707680 records from 2183 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0236261-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/804fc7f381d9809d73f017e501b2e538
title: Lower American River steelhead and Chinook stranding surveys, California, 2016 - 2024

description: Steelhead stranding surveys have been conducted on the Lower American River (LAR) for the years 2016-2024. Reclamation’s mission is to manage, develop and protect water and related resources in an environmentally and economically sound manner in the interest of the American people. In the National Marine Fisheries Service (NMFS) most recent biological opinion (2009), the presence of dams was identified as the most influential stressor to steelhead on the American River because it blocks passage to historic spawning and rearing habitat. Thus, Reclamation is required to monitor the effects of flow regulation by dams on the steelhead life stages present in the river system. Congruently, Reclamation has committed to significant restoration actions including salmonid spawning and rearing habitat rehabilitation on the Lower American River, which also require accurate and robust monitoring. These surveys support the mission and monitoring requirements of Reclamation by collecting the stranding data required to effectively conduct analyses of the effects of regulating Folsom and Nimbus dams on this federally listed species’ critical life stage development and support operational decision making.
DOI: 10.6073/pasta/a166e8ce7cf264f0da09da096524348a
title: Lower American River steelhead spawning surveys (Chinook and lamprey data included), California, 2002 to 2024

description: Steelhead spawning surveys have been conducted on the Lower American River (LAR) for the years 2002-2005, 2007, and 2009-2024. These surveys in conjunction with annual escapement estimates to Nimbus Fish Hatchery, are used to provide a yearly index of in-river and over all spawning abundance. Reclamation’s mission is to manage, develop and protect water and related resources in an environmentally and economically sound manner in the interest of the American people. In the National Marine Fisheries Service (NMFS) most recent biological opinion (2009), the presence of dams was identified as the most influential stressor to steelhead on the American River because it blocks passage to historic spawning and rearing habitat. Thus, Reclamation is required to monitor the effects of flow regulation by dams on the steelhead life stages present in the river system. Congruently, Reclamation has committed to significant restoration actions including salmonid spawning and rearing habitat rehabilitation on the Lower American River, which also require accurate and robust monitoring. These surveys support the mission and monitoring requirements of Reclamation by collecting the spawning data required to effectively conduct analyses of the effects of regulating Folsom and Nimbus dams on this federally listed species’ critical life stage development and support operational decision making.
DOI: 10.7267/b8515w17z
title: Re-coding of the Dataset for Status of the European Green Crab, Carcinus maenas, in Oregon and Washington coastal Estuaries in 2019 and 2020

description: European green crab, Carcinus maenas, trapped and collected in coastal Oregon and Washington coastal estuaries during the 2019 and 2020. Data for individual crabs include: estuary, site, date of collection, sex, carapace width, weight, molt stage (color of abdomen), missing limbs, estimated year class, method of collection, and name of collector. This dataset has been re-coded for Kimberly Sims MNR capstone
DOI: 10.15468/dl.5xjwwd
title: Occurrence Download

description: A dataset containing 1216 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-116.58922 23.86839,-109.58744 26.41446,-98.06907 30.57058,-106.1438 57.4072,-131.53396 57.29028,-116.58922 23.86839))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sanicula graveolens Poepp. ex DC."
 ]
}

 The dataset includes 1216 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008813-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/j3s2-xe98
title: SynGen6: Synthetic Genomic Dataset with Diverse Ancestry

description: SynGen6 is a synthetic genomic dataset that encompasses six distinct populations.  We utilized Principal Component Analysis (PCA) and ϵ-local differential privacy (LDP) to generate synthetic samples. We then simulated phenotype vectors associated with significant SNPs, mirroring real-world gene-disease associations. We also generated synthetic SNPs to watermark the dataset enabling verification of outsourced computations. Lastly, synthetic relatives were created to support research on kinship inference and family-based genomic analyses. The actual SynGen6 data can be created by runningour scripts in the All of Us Research Hub WorkBench. Here, we provide a toy example based on the 1000 genomes public dataset.
DOI: 10.18739/a2319s462
title: Alaska Community Ice Observations - 2019-2024

description: This dataset contains community based observations of ice thickness throughout the winters of 2019/2020, 2020/2021, and 2021/2022. Observations are co-located within or near communities participating in the Fresh Eyes on Ice project, seeking to expand spatial coverage of ice observations and science literacy in classrooms around the state. This spatially distributed dataset provides valuable information about ice thickness through the winter for the period of 2019-2022 on lakes and rivers around Alaska, including Big Lake near Venetie, Alaska, Brown's Slough in Bethel, Alaska, Noyes Slough in Fairbanks, Alaska, the Tanana River near Fairbanks, Alaska, Shageluk Lake near Shageluk, Alaska, Third Lake near Noatak, Alaska, Alexander Lake in Galena, Alaska, Smith Lake near Fairbanks, Alaska, Big Trail Lake near Fairbanks, Alaska, Toolik Lake at Toolik Research Station, Alaska, Jan Lake near Tok, Alaska, Float Pond Lake near Nenana, Alaska, unnamed lakes in the communities of Kenny Lake, Alaska, Arctic Village, Alaska, Sleetmute, Alaska, Utqiagvik, Alaska, and McGrath, Alaska, Pippen Lake near Tonsina, Alaska, Yukon River near Eagle, Alaska, Long Lake near Eagle Village, Alaska, Sculpin Lake near Chitina, Alaska, Dog Pits Lakes near Fairbanks, Alaska, Yukon River near Rampart, Alaska, ACSA Pond near Nome, Alaska, Willow Creek near Kenny Lake, Alaska, Chena River near Fairbanks Alaska, and Cripple Creek near Fairbanks, Alaska. These observations were made by drilling of 3 holes in an undisturbed location at the site by students, teachers, and community members, as well as members of the Fresh Eyes on Ice project. Snow depth was recorded at each of the holes prior to drilling.
DOI: 10.13026/a2mm-bn44
title: MIMIC-IV

description: Retrospectively collected medical data has the opportunity to improve patient
care through knowledge discovery and algorithm development. Broad reuse of
medical data is desirable for the greatest public good, but data sharing must
be done in a manner which protects patient privacy. The Medical Information
Mart for Intensive Care (MIMIC)-III database provided critical care data for
over 40,000 patients admitted to intensive care units at the Beth Israel
Deaconess Medical Center (BIDMC). Importantly, MIMIC-III was deidentified, and
patient identifiers were removed according to the Health Insurance Portability
and Accountability Act (HIPAA) Safe Harbor provision. MIMIC-III has been
integral in driving large amounts of research in clinical informatics,
epidemiology, and machine learning. Here we present MIMIC-IV, an update to
MIMIC-III, which incorporates contemporary data and improves on numerous
aspects of MIMIC-III. MIMIC-IV adopts a modular approach to data organization,
highlighting data provenance and facilitating both individual and combined use
of disparate data sources. MIMIC-IV is intended to carry on the success of
MIMIC-III and support a broad set of applications within healthcare.
DOI: 10.7267/bv73c727z
title: Zooplankton in Upper Willamette Reservoirs, 2015

description: Samples targeting crustacean zooplankton were collected from 3 upper Willamette Basin reservoirs during May-August 2015. Van Dorn sampling devices were used to collect samples at discrete depths from Fall Creek Reservoir, Lookout Point Reservoir, and Hills Creek Reservoir. Zooplankton samples were collected during daytime and nighttime corresponding with the new moon phase to evaluate zooplankton diel migration in these reservoirs. Zooplankton were visually identified using a microscope and the quantity found at each depth was recorded. Density was calculated for each taxa identified per sample collected. This dataset also includes environmental parameters such as temperature, light, and chlorophyll corresponding to sample collection date.
DOI: 10.5281/zenodo.13922060
title: NextVir: Enabling Classification of Tumor-Causing Viruses with Genomic Foundation Models

description: These are a collection of 150bp reads synthesized using ART. Viral reference genomes were downloaded using iCAV, and the primary assemblies of GRCh38.p14 were used for the human reference.
DOI: 10.5281/zenodo.13922061
title: NextVir: Enabling Classification of Tumor-Causing Viruses with Genomic Foundation Models

description: These are a collection of 150bp reads synthesized using ART. Viral reference genomes were downloaded using iCAV, and the primary assemblies of GRCh38.p14 were used for the human reference.
DOI: 10.13026/bxzm-dg78
title: A multimodal dental dataset facilitating machine learning research and clinic services

description: Oral diseases affect nearly 3.5 billion people, with the majority residing in
low- and middle-income countries. Due to limited healthcare resources, many
individuals are unable to access proper oral healthcare services. Image-based
machine learning technology is one of the most promising approaches to
improving oral healthcare services and reducing patient costs. Openly
accessible datasets play a crucial role in facilitating the development of
machine learning techniques. However, existing dental datasets have
limitations such as a scarcity of Cone Beam Computed Tomography (CBCT) data,
lack of matched multi-modal data, and insufficient complexity and diversity of
the data. This project addresses these challenges by providing a dataset that
includes 329 CBCT images from 169 patients, multi-modal data with matching
modalities, and images representing various oral health conditions.