cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27234222.v1
title: Automatically Generated Chemical KG

description: Abstract - In 2020, nearly 3 million scientific and engineering papers were published worldwide (White, K. Publications Output: U.S. Trends And International Comparisons). The vastness of the literature that already exists, the increasing rate of appearance of new publications, and the timely translation of artificial intelligence methods into scientific and engineering communities have ushered in the development of automated methods for mining and extracting information from technical documents. However, domain-specific approaches for extracting knowledge graph representations from semantic information remain limited. In this paper, we develop a natural language processing (NLP) approach to extract knowledge graphs resulting in a semantically structured network (SSN) that can be queried. After a detailed exposition of the modeling method, the approach is demonstrated specifically for the synthetic chemistry of organic molecules from the text of approximately 100,000 full-length patents. In this paper, we focus specifically on characterizing the knowledge graph to develop insights into the linguistic patterns and trends within the data and to establish objective graph characteristics that may enable comparisons among other text-based knowledge graphs across domains. Graph characterization is performed for network motif structures, assortativity, and eigenvector centrality. The structural information provided by the measures reveals language tendencies commonly employed by authors in the text discourse for chemical reactions. These include observations of the prevalence of descriptions of specific compound names, that common solvents and drying agents cut across large numbers of chemical synthesis approaches, and that power-law trends clearly emerge in the limit of larger corpora. The findings provide important quantitative characterizations of knowledge graphs for use in validation in large data settings.DOI of publication: 10.1021/acs.jcim.4c01904Description of data and formatting: This data represents the chemical network information extracted as a result of the efforts described within the corresponding paper. There are 2 files present in this repo. The <i>small_SSKG_sample.json </i>file is just a small snapshot of the larger file for use in unit testing. The <i>Full_SSKG.json </i>file is the complete graph extracted from the patent literature. The file is in JSON format and is intended to be loaded within Python as a dictionary. import json<br>with open('path/to/KGfile.json', 'r') as fp: data = json.load(fp)<br>ents = data["entities"] # this is a list of dictionary type items<br>rels = data["relations"] # this is a list of dictionary type itemsprint(ents[0])<br>print(rels[0])<br>Recommended visualization software: Cytoscape<br>The open source Cytoscape program was found to produce the most easily read graphics and was least likely to crash. <br><br>02/05/2025 Note: The full KG file should be uploaded within a week<br><br>
DOI: 10.7266/n7zs2tfj
title: R/V Atlantis/ALVIN (DSV-2): AT26-13 Hydrographic (CTD) Data, Northern Gulf of Mexico, March 31 - April 21, 2014
DOI: 10.5066/p13rpjyz
title: Campaign GNSS measurements on the Island of Hawaiʻi collected by the Hawaiian Volcano Observatory in 2022

description: This release includes data collected during campaign GNSS surveys at Kīlauea and Mauna Loa on the Island of Hawaiʻi in 2022. It includes data from a total of 63 sites occupied from January 1 to December 31, 2022. For each site, we include its measured raw data in daily files, Receiver INdependent EXchange (RINEX) files for each day, field log sheet(s), and associated metadata information.

The authors thank the USGS Hawaiian Volcano Observatory staff, volunteers, and collaborators for helping collect these data. Specific gratitude and awknowledgement extended to Logan Fusso, Kevan Kamibayashi, David Okita, Brian Mannisto-Meyers, Steven Fuke, and Seth Swaney.
DOI: 10.15468/dl.fghrkv
title: Occurrence Download

description: A dataset containing 329616 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "TaxonKey is Malus Mill."
 ]
}

 The dataset includes 329616 records from 1471 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023828-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/4srmna
title: A new species of the spider genus Ochyrocera Simon (Araneae, Ochyroceratidae) from Mexico, with biogeographical comments and an updated identification key for Mexican species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Valdez-Mondragón, Alejandro, Chamé-Vázquez, David (2023): A new species of the spider genus Ochyrocera Simon (Araneae, Ochyroceratidae) from Mexico, with biogeographical comments and an updated identification key for Mexican species. Zootaxa 5374 (4): 552-562, DOI: 10.11646/zootaxa.5374.4.6, URL: https://mapress.com/zt/article/download/zootaxa.5374.4.6/52306ABSTRACTA new species of the spider genus Ochyrocera Simon, 1891 is described from southern Mexico. Males and females of Ochyrocera marialuisae sp. nov. were collected from a cave in Oaxaca, Mexico. With the description of the new species herein, the species diversity of the genus from Mexico increases to eight species. In addition, biogeographical comments about the distribution of the species, an updated taxonomic identification key, and a distribution map for the Mexican species are provided.
DOI: 10.15468/5b4r97
title: Two new species of the genus Siro Latreille, 1796 (Opiliones, Cyphophthalmi, Sironidae) in the European fauna

description: This dataset contains the digitized treatments in Plazi based on the original journal article Karaman, Ivo, Lienhard, Andrea, Niklos, Kathrin, Raspotnig, Guenther (2022): Two new species of the genus Siro Latreille, 1796 (Opiliones, Cyphophthalmi, Sironidae) in the European fauna. European Journal of Taxonomy 834 (1): 1-21, DOI: 10.5852/ejt.2022.834.1893, URL: http://dx.doi.org/10.5852/ejt.2022.834.1893Abstract. Two new opilionid species from suborder Cyphophthalmi, family Sironidae, Siro franzi Karaman & Raspotnig sp. nov. and Siro ozimeci Karaman sp. nov., from Austria and Croatia respectively, are described and illustrated. Both species show a close relation to two other relict sironid species from the southern and eastern parts of the Alps, Siro valleorum and Siro crassus. All four species are treated here as a monophyletic, alpine group of genus Siro, opposed to the remaining two European sironids, S. rubens and S. carpaticus (palaeoeuropean Siro group). The history of the alpine Siro group parallels the history of a part of the dynamic European archipelago in the Mediterranean Tethys area, which became a part of the Alpine orogeny. Diversification of the alpine Siro group is the result of the orogenic evolution of the Alps, linked to the Austroalpine and South Alpine tectonic units.
DOI: 10.34740/kaggle/dsv/14290748
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.ebpa2f
title: Occurrence Download

description: A dataset containing 78612 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Torilis arvensis (Huds.) Link"
 ]
}

 The dataset includes 78612 records from 1470 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019674-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14175517
title: Cyclisation Modes in Anilides of N-Protected 3-Oxo-4-phenylaminobutyric Acid Under Knorr Conditions - NMR Data

description: This archive contains raw 1H/13C FIDs and associated data in Bruker-specific format that can be viewed with Bruker’s TopSpin or other appropriate NMR processing software. The subfolders are named in accordance with the compound numbering in the associated research paper (Cyclisation Modes in Anilides of N-Protected 3-Oxo-4-phenylaminobutyric Acid Under Knorr Conditions).

Correspondence: angelov@uni-plovdiv.bg
DOI: 10.5281/zenodo.14175518
title: Cyclisation Modes in Anilides of N-Protected 3-Oxo-4-phenylaminobutyric Acid Under Knorr Conditions - NMR Data

description: This archive contains raw 1H/13C FIDs and associated data in Bruker-specific format that can be viewed with Bruker’s TopSpin or other appropriate NMR processing software. The subfolders are named in accordance with the compound numbering in the associated research paper (Cyclisation Modes in Anilides of N-Protected 3-Oxo-4-phenylaminobutyric Acid Under Knorr Conditions).

Correspondence: angelov@uni-plovdiv.bg
DOI: 10.17034/e78b1743-39e0-4b60-b891-ce94ee3e601e
title: Dataset for "Multi-parametric characterization of proton bunches above 50 MeV generated by helical coil targets"

description: Dataset for "Multi-parametric characterization of proton bunches above 50 MeV generated by helical coil targets." Published in High Power Laser Science and Technology

Abstract of the paper:

Tightly focused proton beams generated from helical coil targets have been shown to be highly collimated across small distances, and display characteristic spectral bunching. We show, for the first time, proton spectra from such targets at high resolution via a Thomson parabola spectrometer. The proton spectral peaks reach energies above 50 MeV, with cutoffs approaching 70 MeV and particle numbers greater than 1010. The spectral bunch width has also been measured as low as approximately 8.5 MeV (17% energy spread). The proton beam pointing and divergence measured at metre-scale distances are found to be stable with the average pointing stability below 10 mrad, and average half-angle beam divergences of approximately 6 mrad. Evidence of the influence of the final turn of the coil on beam pointing over long distances is also presented, corroborated by particle tracing simulations, indicating the scope for further improvement and control of the beam pointing with modifying target parameters.
DOI: 10.15468/dl.cju97x
title: Occurrence Download

description: A dataset containing 4307 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nymphaea nouchali Burm.fil."
 ]
}

 The dataset includes 4307 records from 160 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019680-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4burpk
title: Occurrence Download

description: A dataset containing 130970 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Material citation, Specimen, Living Specimen, Occurrence evidence)",
 "TaxonKey is Cymodocea serrulata (R.Br.) Asch. & Magnus",
 "Year 2000-2024"
 ]
}

 The dataset includes 130970 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019635-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sbbved
title: Occurrence Download

description: A dataset containing 330 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calolisianthus pulcherrimus (Mart.) Gilg"
 ]
}

 The dataset includes 330 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0254700-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ec4jup
title: Occurrence Download

description: A dataset containing 45117 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Africa, Europe)",
 "Country is one of (Spain, Portugal, Greece, Morocco, Cabo Verde)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Echium L."
 ]
}

 The dataset includes 45117 records from 135 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256446-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ek2bv6
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthropoda",
 "DatasetKey is Pêches électriques de sauvetage de la Maison d'Initiation à la Faune et aux Espaces naturels-Rapportage des données de pêche électriques",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0227160-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8u5nzv
title: Occurrence Download

description: A dataset containing 323 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Spain, Andorra)",
 "Geometry POLYGON((1.58059 42.72429,0.97761 42.92151,0.55389 42.91554,0.47241 42.73626,0.35018 42.42426,0.20351 42.03813,0.08129 41.52165,0.12203 41.0809,0.24425 40.53199,0.7576 40.52579,1.06724 40.84709,3.16952 41.6679,3.52805 42.42426,3.14508 42.63443,2.60728 42.58046,1.58059 42.72429))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "VerbatimScientificName is senecio inaequidens"
 ]
}

 The dataset includes 323 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262465-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mknudz
title: Occurrence Download

description: A dataset containing 2181 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (South Africa, Madagascar, Brazil, Colombia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Strelitziaceae"
 ]
}

 The dataset includes 2181 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0227119-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mrmukx
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pandeleteius brevinasus Champion, 1911"
 ]
}

 The dataset includes 62 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0272035-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrztxz
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthropoda",
 "DatasetKey is Création du poste 225 000/20 000 volts de CONQUES SUR ORBIEL et de son raccordement au poste de MOREAU par une liaison souterraine à 225 000 volts - Faune et flore d'intérêt patrimonial",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 34 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0227177-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7n4bmj
title: Occurrence Download

description: A dataset containing 2529 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Swiss National Databank of Vascular Plants",
 "Geometry POLYGON((7.44149 46.95411,7.44489 46.95179,7.4501 46.94998,7.45554 46.95026,7.4578 46.95032,7.45979 46.9493,7.46829 46.95655,7.47513 46.96331,7.46943 46.96811,7.46625 46.96936,7.44401 46.9641,7.44067 46.95641,7.44149 46.95411))"
 ]
}

 The dataset includes 2529 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256445-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cj8t5f
title: Occurrence Download

description: A dataset containing 336 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Specimen, Occurrence evidence)",
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lupinus gredensis Gand."
 ]
}

 The dataset includes 336 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0227182-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bj4jr5
title: Occurrence Download

description: A dataset containing 595614 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is LACM Vertebrate Collection"
 ]
}

 The dataset includes 595614 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262466-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uy54vf
title: Occurrence Download

description: A dataset containing 535 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthropoda",
 "DatasetKey is Programme les sentinelles du climat - effets du changement climatique sur la biodiversité en région Nouvelle-Aquitaine-Observations faunistiques fortuites réalisées par le CEN Aquitaine",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 535 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0227195-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ec8f8j
title: Occurrence Download

description: A dataset containing 238 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plagiopetalum esquirolii (H.Lév.) Rehder"
 ]
}

 The dataset includes 238 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0248391-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6rkf2z
title: Occurrence Download

description: A dataset containing 173 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isabelia pulchella (Kraenzl.) C.Van den Berg & M.W.Chase"
 ]
}

 The dataset includes 173 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0254706-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m7ynhd
title: Occurrence Download

description: A dataset containing 6326685 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Hong Kong)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6326685 records from 2539 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0248387-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9r6ytw
title: Occurrence Download

description: A dataset containing 189533 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (USGS Nonindigenous Aquatic Species database, iNaturalist Research-grade Observations, Idaho State University, Ray J. Davis Herbarium Vascular Plants, C.P. Gillette Museum of Arthropod Diversity)",
 "Geometry POLYGON((-112.52279 42.42169,-109.13074 42.40771,-108.59625 45.31419,-112.96645 45.36659,-112.52279 42.42169))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 189533 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019630-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ynxhge
title: Occurrence Download

description: A dataset containing 116485 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((35.924964333333335 32.097476, 35.924964333333335 49.184106666666665, 1.8796086666666671 49.184106666666665, 1.8796086666666671 32.097476, 35.924964333333335 32.097476))",
 "EventDate is 2015-12-01,2015-12-31"
 ]
}

 The dataset includes 116485 records from 416 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048429-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yqfgze
title: Occurrence Download

description: A dataset containing 3525 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pitangus sulphuratus (Linnaeus, 1766)",
 "HasCoordinate is false"
 ]
}

 The dataset includes 3525 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003529-150528172251762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q2urwa
title: Occurrence Download

description: A dataset containing 154833 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The Scottish Squirrel Database"
 ]
}

 The dataset includes 154833 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049779-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xjpush
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phoenix rupicola T.Anderson"
 ]
}

 The dataset includes 41 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003529-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7hjbgd
title: Occurrence Download

description: A dataset containing 18564 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ciliata mustela (Linnaeus, 1758)"
 ]
}

 The dataset includes 18564 records from 157 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049780-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.