cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/5af83637d52c662a4aff9d2b21448c6a
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating and Drying Research (DryPEHR): Phenology of Dominant Plant Species I - Bud burst and Senescence 2013-2019

description: This drying and warming experiment addresses the following questions: 1) Does ecosystem drying, warming and permafrost thaw cause a net release or uptake of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C that comprises the bulk of the soil C pool influence ecosystem C loss? 3) How do drying and warming affect plant communities and ecosystem properties? We are answering these questions using a combined warming and drying experiment (DryPEHR), which is situated with the Carbon in Permafrost Experimental Heating Research (CiPEHR) project and located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. Warming treatment here refers to growing season air temperature warming (~1C) using open top chambers (OTC) combined with soil 'warming' using snow fences during the snow covered months. Drying is achieved using an automated pumping system that lowers the water table in the dry plots. Soil warming began in 2008; OTCs and drying in 2011. In this dataset we specifically ask, how does warming and drying of soil and air impact the phenology of dominant plant species? Phenological data was collected to determine the timing of first bud break, onset and completion of senescence, and reproductive effort (flower and berry production).
DOI: 10.6073/pasta/213f652a4669096fe061c160f461448f
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating and Drying Research (DryPEHR): Phenology of Dominant Plant Species II - Berry Production 2013-2019

description: This drying and warming experiment addresses the following questions: 1) Does ecosystem drying, warming and permafrost thaw cause a net release or uptake of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C that comprises the bulk of the soil C pool influence ecosystem C loss? 3) How do drying and warming affect plant communities and ecosystem properties? We are answering these questions using a combined warming and drying experiment (DryPEHR), which is situated with the Carbon in Permafrost Experimental Heating Research (CiPEHR) project and located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. Warming treatment here refers to growing season air temperature warming (~1C) using open top chambers (OTC) combined with soil 'warming' using snow fences during the snow covered months. Drying is achieved using an automated pumping system that lowers the water table in the dry plots. Soil warming began in 2008; OTCs and drying in 2011. In this dataset we specifically ask, how does warming and drying of soil and air impact the phenology of dominant plant species? Phenological data was collected to determine the timing of first bud break, onset and completion of senescence, and reproductive effort (flower and berry production).
DOI: 10.6073/pasta/a4dc4fab9079f0d389a9ab6c7d44faa3
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating Research (CiPEHR): Weekly thaw depth data, 2009-2019

description: The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions: 1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C, that comprises the bulk of the soil C pool, influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange? We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. This data set includes weekly thaw depth measurements collected from winter warming, summer warming, and control treatment plots at CiPEHR. Additional measurements from on-plot gas flux wells, water table monitoring wells, and off-plot locations are also reported.
DOI: 10.6073/pasta/19e93df9205ea575e890c8aef4e500b0
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating and Drying Research (DryPEHR): Weekly thaw depth data, 2011-2019

description: This drying and warming experiment addresses the following questions: 1) Does ecosystem drying, warming and permafrost thaw cause a net release or uptake of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C that comprises the bulk of the soil C pool influence ecosystem C loss? 3) How do drying and warming affect plant communities and ecosystem properties? We are answering these questions using a combined warming and drying experiment (DryPEHR), which is situated with the Carbon in Permafrost Experimental Heating Research (CiPEHR) project and located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. Warming treatment here refers to growing season air temperature warming (~1C) using open top chambers (OTC) combined with soil 'warming' using snow fences during the snow covered months. Drying is achieved using an automated pumping system that lowers the water table in the dry plots. Soil warming began in 2008; OTCs and drying in 2011. This data set includes weekly ground thaw measurements.
DOI: 10.6073/pasta/95814109be64545abceefc9f4c1df90b
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating and Drying Research (DryPEHR): NDVI 2011-2019

description: This drying and warming experiment addresses the following questions: 1) Does ecosystem drying, warming and permafrost thaw cause a net release or uptake of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C that comprises the bulk of the soil C pool influence ecosystem C loss? 3) How do drying and warming affect plant communities and ecosystem properties? We are answering these questions using a combined warming and drying experiment (DryPEHR), which is situated with the Carbon in Permafrost Experimental Heating Research (CiPEHR) project and located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. Warming treatment here refers to growing season air temperature warming (~1C) using open top chambers (OTC) combined with soil 'warming' using snow fences during the snow covered months. Drying is achieved using an automated pumping system that lowers the water table in the dry plots. Soil warming began in 2008; OTCs and drying in 2011.The Normalized Difference Vegetation Index (NDVI) was measured using a specialized handheld camera at individual plots throughout the 2011-2018 growing season.
DOI: 10.6073/pasta/91e82982640e718fbfd12f9362f487f1
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating and Drying Research (DryPEHR): Phenology of Dominant Plant Species III - Flowering Date 2013-2019

description: This drying and warming experiment addresses the following questions: 1) Does ecosystem drying, warming and permafrost thaw cause a net release or uptake of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C that comprises the bulk of the soil C pool influence ecosystem C loss? 3) How do drying and warming affect plant communities and ecosystem properties? We are answering these questions using a combined warming and drying experiment (DryPEHR), which is situated with the Carbon in Permafrost Experimental Heating Research (CiPEHR) project and located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. Warming treatment here refers to growing season air temperature warming (~1C) using open top chambers (OTC) combined with soil 'warming' using snow fences during the snow covered months. Drying is achieved using an automated pumping system that lowers the water table in the dry plots. Soil warming began in 2008; OTCs and drying in 2011. In this dataset we specifically ask, how does warming and drying of soil and air impact the phenology of dominant plant species? Phenological data was collected to determine the timing of first bud break, onset and completion of senescence, and reproductive effort (flower and berry production).
DOI: 10.5281/zenodo.3676087
title: RAM Legacy Stock Assessment Database v4.491

description: RAM Legacy Stock Assessment Database version 4.491
DOI: 10.6073/pasta/ada31723ab872d9f06544c7cd21f9563
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating Research (CiPEHR): NDVI 2009-2019

description: The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions: 1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C, that comprises the bulk of the soil C pool, influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange? We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range.The Normalized Difference Vegetation Index (NDVI) was measured using a specialized handheld camera at individual plots throughout the growing seasons.
DOI: 10.5281/zenodo.3676089
title: MiRoR4_P1_A systematic review describes models for recruitment prediction at the design stage of a clinical trial

description: This dataset is related to the publication "A systematic review describes models for recruitment prediction at the design stage of a clinical trial".
DOI: 10.6073/pasta/d8df540fd69804eee60f414fd134fa74
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating Research (CiPEHR): Phenology of Dominant Plant Species I - Bud burst and Senescence 2013-2019

description: The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions: 1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C, that comprises the bulk of the soil C pool, influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange? We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. In this dataset we specifically ask, how does warming of soil and air impact the phenology of dominant plant species? Phenological data was collected to determine the timing of first bud break, onset and completion of senescence, and reproductive effort (flower and berry production).
DOI: 10.6073/pasta/583b180ec55e2cb951f8f191b12854b5
title: Eight Mile Lake Research Watershed, Thaw Gradient: NDVI 2013-2019

description: This drying and warming experiment addresses the following questions: 1) Does ecosystem drying, warming and permafrost thaw cause a net release or uptake of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C that comprises the bulk of the soil C pool influence ecosystem C loss? 3) How do drying and warming affect plant communities and ecosystem properties? We are answering these questions using a combined warming and drying experiment (DryPEHR), which is situated with the Carbon in Permafrost Experimental Heating Research (CiPEHR) project and located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. Warming treatment here refers to growing season air temperature warming (~1C) using open top chambers (OTC) combined with soil 'warming' using snow fences during the snow covered months. Drying is achieved using an automated pumping system that lowers the water table in the dry plots. Soil warming began in 2008; OTCs and drying in 2011.The Normalized Difference Vegetation Index (NDVI) was measured using a specialized handheld camera at individual plots throughout the 2011-2018 growing seasons.
DOI: 10.6073/pasta/49590d6e1c6093f5d47f8190dbc70b79
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating Research (CiPEHR): Half-hourly growing season, chamber-based, CO2 flux data, 2009-2019

description: The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions: 1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C, that comprises the bulk of the soil C pool, influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange? We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. This data contains CO2 fluxes measured using an automated chamber system that measures net ecosystem CO2 exchange (NEE). Measurements are made every ~1.5 hours and modeled half-hourly. Half hour ecosystem respiration is modeled using an exponential Q10 relationship when light conditions are low (PAR&lt;5umol/m2/s) and using a hyperbolic light relationship when PAR&gt;5umol/m2/s. GPP is calculated as the difference between NEE and Reco.
DOI: 10.6073/pasta/c2b7a30546d2698c8b058444bec41ef6
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating Research (CiPEHR): Winter ecosystem respiration measurements using soda lime, 2010-2019

description: The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions: 1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C, that comprises the bulk of the soil C pool, influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange? We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. Soda Lime absorption of CO2 over the winter season is a method of estimating cumulative soil respiration across the site.
DOI: 10.6073/pasta/910c46fb69f8f3e65d77868c8443ae2e
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating Research (CiPEHR): Phenology of Dominant Plant Species II - Berry Production 2013-2019

description: The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions: 1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C, that comprises the bulk of the soil C pool, influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange? We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. In this dataset we specifically ask, how does warming of soil and air impact the phenology of dominant plant species? Phenological data was collected to determine the timing of first bud break, onset and completion of senescence, and reproductive effort (flower and berry production).
DOI: 10.6073/pasta/fab00f9e9e8d2b8bef0c97c04b9af551
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating Research (CiPEHR): Phenology of Dominant Plant Species III - Flowering Date 2013-2019

description: The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions: 1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C, that comprises the bulk of the soil C pool, influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange? We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. In this dataset we specifically ask, how does warming of soil and air impact the phenology of dominant plant species? Phenological data was collected to determine the timing of first bud break, onset and completion of senescence, and reproductive effort (flower and berry production).
DOI: 10.5281/zenodo.3554149
title: Data from the article "The mitochondrial phylogeny of land plants shows support for Setaphyta under non-stationary substitution models"

description: Data from the article: "The mitochondrial phylogeny of land plants shows support for Setaphyta under non-stationary substitution models" Filipe de Sousa, Peter Civáň, João Brazão, Peter G. Foster, Cymon J. Cox These data are divided in four folders: * 1_36_gene_nt_alignments_&_trees - contains 36 single gene nucleotide alignments and the corresponding trees inferred from a MCMC analysis on the program p4 * 2_36_gene_aa_alignments_&_trees - contains 36 single gene amino acid alignments and the corresponding trees inferred from a MCMC analysis on the program p4 * 3_concatenated_alignments_&_trees - contains the nucleotide, codon-degenerate and amino acid alignments of 36 concatenated genes and the corresponding trees inferred from MCMC analyses on the programs p4 and phylobayes with composition homogeneous, tree-heterogeneous and site-heterogeneous models; trees correspond to figures S1-S7 on the online supplemental file. * 4_concatenated_ML_trees - contains the ML trees from the analyses of the concatenated datasets (nucleotide, codon degenerate and amino acid).
description: This work was supported by the Portuguese Foundation for Science and Technology (FCT) through project grant PTDC/BIA-EVF/1499/2014 to C.J.C. and national funds from FCT through project UID/Multi/04326/2019. This study also received support from the Portuguese node of ELIXIR, specifically BIODATA.PT ALG-01-0145-FEDER-022231.
DOI: 10.5281/zenodo.3554148
title: Data from the article "The mitochondrial phylogeny of land plants shows support for Setaphyta under non-stationary substitution models"

description: Data from the article: "The mitochondrial phylogeny of land plants shows support for Setaphyta under non-stationary substitution models" Filipe de Sousa, Peter Civáň, João Brazão, Peter G. Foster, Cymon J. Cox These data are divided in four folders: * 1_36_gene_nt_alignments_&_trees - contains 36 single gene nucleotide alignments and the corresponding trees inferred from a MCMC analysis on the program p4 * 2_36_gene_aa_alignments_&_trees - contains 36 single gene amino acid alignments and the corresponding trees inferred from a MCMC analysis on the program p4 * 3_concatenated_alignments_&_trees - contains the nucleotide, codon-degenerate and amino acid alignments of 36 concatenated genes and the corresponding trees inferred from MCMC analyses on the programs p4 and phylobayes with composition homogeneous, tree-heterogeneous and site-heterogeneous models; trees correspond to figures S1-S7 on the online supplemental file. * 4_concatenated_ML_trees - contains the ML trees from the analyses of the concatenated datasets (nucleotide, codon degenerate and amino acid).
description: This work was supported by the Portuguese Foundation for Science and Technology (FCT) through project grant PTDC/BIA-EVF/1499/2014 to C.J.C. and national funds from FCT through project UID/Multi/04326/2019. This study also received support from the Portuguese node of ELIXIR, specifically BIODATA.PT ALG-01-0145-FEDER-022231.
DOI: 10.5519/qd.61gb8xnp
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.17632/nvmd52wmnj.1
title: Data for: Behaviors of sessile benthic animals in the abyssal Northeast Pacific Ocean

description: These are data of the observed contraction behaviors of several species of sponges and cnidarians on the deep seafloor of Station M (4,100 m depth, northeast Pacific Ocean). Data are organized with each worksheet housing data for a different taxon. Each worksheet has records of contraction kinetics for different individuals. Units are hours unless indicated otherwise.
DOI: 10.25550/1wwr
title: Hallgrimsson/Klein/Spritz. Genetic Determinants of Orofacial Shape and Relationship to Cleft Lip/Palate

description: Orofacial clefts, principally cleft lip (CL), cleft palate (CP), and cleft lip and palate (CLP), are among the most common major birth defects, occurring in ~1/700 to 1/1000 live births in various populations around the world, ~70% as a sporadic, isolated abnormality. Such "non-syndromic" orofacial clefts act as complex traits, involving multiple genes and environmental risk factors. To date traditional genetic mapping approaches have identified only a few major susceptibility genes for non-syndromic orofacial clefts with certainty. Therefore, new approaches are clearly required. There is considerable evidence that orofacial malformations can occur at the extremes of the normal ranges of phenotypic variation of midfacial size and shape. Here we propose a novel approach to identify genes that regulate midfacial shape in mouse and human. We hypothesize that genes that are major contributors to normal orofacial size and shape will also have important roles in the occurrence of orofacial clefts. To identify such genes, we will perform detailed morphometric analysis of midfacial shape differences in informative mouse strains as well as in select human populations, combining these studies with genetic analyses to identify genes that control major determinants of midfacial morphometries. Our studies have shown that specific inbred strains of mice have heritable differences in measurable parameters of facial shape. We will take advantage of a valuable new resource we have developed, the mouse "Collaborative Cross" (CC), to con-elate heritable differences in facial shape among the 8 founder strains of the CC, along with select Recombinant Inbred lines and Recombinant Intercross (RIX), with detailed genetic mapping data for these mice. This approach will enable identification of quantitative trait loci (QTLs) that underlie these morphometric differences. We will complement our mouse studies with a similar analysis of humans, studying specific populations with different susceptibilities to orofacial clefts. These comparative studies will allow us to identify genes that underlie midfacial shape in humans. Together, these studies should provide a basis for understanding the relationship between human facial morphogenesis and susceptibility to orofacial clefts, and for initiating studies of the functions of these genes in animal models relevant to human orofacial development. Data is now available. Please contact help AT facebase.org with your request to receive further information.