cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.bag6pa
title: Occurrence Download

description: A dataset containing 684 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Greece",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Myosotis ramosissima Rochel"
 ]
}

 The dataset includes 684 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0109492-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p9fpye
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tecticeps glaber Gurjanova, 1933"
 ]
}

 The dataset includes 55 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133431-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t28n9h
title: Occurrence Download

description: A dataset containing 548844 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Motacilla flava Linnaeus, 1758)",
 "HasCoordinate is true",
 "DecimalLatitude is greater than or equal to 29.93667",
 "DecimalLatitude is less than or equal to 51.91193",
 "DecimalLongitude is greater than or equal to -14.67522",
 "DecimalLongitude is less than or equal to 39.79752",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation)",
 "Year is greater than or equal to 1970",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 548844 records from 1610 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042064-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sh3zt5
title: Occurrence Download

description: A dataset containing 265 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pyrrhura griseipectus Salvadori, 1900"
 ]
}

 The dataset includes 265 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026896-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.be8zun
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scorzonera pseudodivaricata Lipsch."
 ]
}

 The dataset includes 102 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066408-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0a11l8
title: Occurrence Download

description: A dataset containing 1276 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-98.48007 19.53132,-98.23837 19.53132,-98.23837 19.72276,-98.48007 19.72276,-98.48007 19.53132))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1276 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001048-180925134338326/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.umy8tb
title: Occurrence Download

description: A dataset containing 3497 species occurrences available in GBIF matching the query:
{
 "and" : [
 "MediaType is Image",
 {
 "or" : [
 "Month is January",
 "Month is February",
 "Month is March",
 "Month is April",
 "Month is May",
 "Month is June",
 "Month is July",
 "Month is August",
 "Month is September",
 "Month is October",
 "Month is November",
 "Month is December"
 ]
 },
 "TaxonKey is Pteris vittata L."
 ]
}

 The dataset includes 3497 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015669-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ezl8er
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pterygoplichthys ambrosettii (Holmberg, 1893)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066413-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dgzwwd
title: Occurrence Download

description: A dataset containing 1521349 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carabidae"
 ]
}

 The dataset includes 1521349 records from 1011 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001048-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.swxj4p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tischeria fuscomarginella Chambers, 1875",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is Poland",
 "Country is Poland"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0393949-210914110416597/datasets/export for details.
DOI: 10.15468/dl.3fq7c5
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-98.74463 30.57477,-71.36841 30.57477,-71.36841 41.54390,-98.74463 41.54390,-98.74463 30.57477))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chrosomus tennesseensis (Starnes & Jenkins, 1988)"
 ]
}

 The dataset includes 32 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083484-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e9sufr
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((65.74219 54.24469,52.80469 12.96602,123.11719 -14.87684,177.11719 20.50111,152.36719 58.59458,144.49219 70.28319,110.74219 72.43819,80.36719 67.01257,65.74219 54.24469))",
 "HasCoordinate is true",
 "TaxonKey is Berberis bergmanniae C.K.Schneid.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001048-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.urqzmx
title: Occurrence Download

description: A dataset containing 17022 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Argentina",
 "Country is Ecuador",
 "Country is Peru",
 "Country is Bolivia (Plurinational State of)",
 "Country is Venezuela (Bolivarian Republic of)",
 "Country is United States of America",
 "Country is Colombia"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Vultur gryphus Linnaeus, 1758"
 ]
}

 The dataset includes 17022 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066423-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gbenbq
title: Occurrence Download

description: A dataset containing 20871 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Nicandra Adans."
 ]
}

 The dataset includes 20871 records from 316 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011148-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ccv63p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"9244225","matchCase":false},{"type":"equals","key":"MEDIA_TYPE","value":"StillImage","matchCase":false},{"type":"equals","key":"BASIS_OF_RECORD","value":"HUMANOBSERVATION","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009162-200221144449610/datasets/export for details.
DOI: 10.15468/dl.ejkhed
title: Occurrence Download

description: A dataset containing 162 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((60.43509 17.47918,120.56491 17.47918,120.56491 41.52082,60.43509 41.52082,60.43509 17.47918))",
 "HasCoordinate is true",
 "TaxonKey is Hippophae tibetana Schltdl.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 162 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008772-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jt5sas
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crocodylus moreletii (Duméril & Bibron, 1851)",
 "Country is Guatemala"
 ]
}

 The dataset includes 31 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066424-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ncuddy
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rorippa benghalensis (DC.) J.Hara"
 ]
}

 The dataset includes 96 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009137-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6zj0qe
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Baudoinia compniacensis (Richon) J.A.Scott & Unter.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066440-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.knfiv1
title: Occurrence Download

description: A dataset containing 1160 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-144.96750 -35.31981,13.96750 -35.31981,13.96750 28.31981,-144.96750 28.31981,-144.96750 -35.31981))",
 "HasCoordinate is true",
 "TaxonKey is Pouteria torta (Mart.) Radlk.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1160 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008769-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17094296
title: Project files provided as supporting information to the manuscript: "Dynamical insights on the role of supercoiling on DNA radiosensitivity"

description: README file to the Zenodo repository provided as supporting information to the manuscript.Authors: Manuel Micheloni, Raffaello Potestio, Lorenzo Petrolli

==================================

The archive 00_ShootingInTimeWindows.tar.gz contains the MD simulations of a 672-bp DNA minicircle with a single DSB introduced either in the loop or in the supercoiled region. Each MD replicate has been carried out in three steps: (1) relaxation with a Bussi thermostat, (2) thermalization with a Langevin thermostat, and (3) a production run of the damaged DNA. More details are in the manuscript, with example scripts in SIM/MD_scripts.Each "DSB#" folder corresponds to one of three supercoiling levels, namely sigma = 0, -0.06, +0.06. Within these folders, time intervals (TW#) are organized into two subfolders: “data” and “input_structure”. The “data” folder includes the pair-wise energy contributions at the lesion interface (subfolder “1.E”), while the snapshots of the systems at the end of steps (2) and (3) are reported in subfolder “2.traj”. The “input_structure” folder contains the .top and .dat oxDNA files of the damaged DNA. Lesions are enforced on the minicircles at the end of stage (2).

The extended MD replicates used to compute the free energy landscapes, as well as the analysis of the superhelical density relaxation (i.e., Figures S1, S2, S3, S4, S5), whose composite compressed size is about 80 GB, are available upon request.
DOI: 10.5281/zenodo.17094295
title: Project files provided as supporting information to the manuscript: "Dynamical insights on the role of supercoiling on DNA radiosensitivity"

description: README file to the Zenodo repository provided as supporting information to the manuscript.Authors: Manuel Micheloni, Raffaello Potestio, Lorenzo Petrolli

==================================

The archive 00_ShootingInTimeWindows.tar.gz contains the MD simulations of a 672-bp DNA minicircle with a single DSB introduced either in the loop or in the supercoiled region. Each MD replicate has been carried out in three steps: (1) relaxation with a Bussi thermostat, (2) thermalization with a Langevin thermostat, and (3) a production run of the damaged DNA. More details are in the manuscript, with example scripts in SIM/MD_scripts.Each "DSB#" folder corresponds to one of three supercoiling levels, namely sigma = 0, -0.06, +0.06. Within these folders, time intervals (TW#) are organized into two subfolders: “data” and “input_structure”. The “data” folder includes the pair-wise energy contributions at the lesion interface (subfolder “1.E”), while the snapshots of the systems at the end of steps (2) and (3) are reported in subfolder “2.traj”. The “input_structure” folder contains the .top and .dat oxDNA files of the damaged DNA. Lesions are enforced on the minicircles at the end of stage (2).

The extended MD replicates used to compute the free energy landscapes, as well as the analysis of the superhelical density relaxation (i.e., Figures S1, S2, S3, S4, S5), whose composite compressed size is about 80 GB, are available upon request.
DOI: 10.15468/dl.9p3prq
title: Occurrence Download

description: A dataset containing 39212 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN",
 "OccurrenceStatus is Present",
 "TaxonKey is Squamata"
 ]
}

 The dataset includes 39212 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052670-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ttuqzm
title: Occurrence Download

description: A dataset containing 36175 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Quaid-i-Azam University Herbarium"
 ]
}

 The dataset includes 36175 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052671-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xc4jd8
title: Occurrence Download

description: A dataset containing 236 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Jatropha peltata",
 "HasCoordinate is true"
 ]
}

 The dataset includes 236 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052672-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34894/ls1zgd
title: Vanishing White Matter Registry
title: VWM Registry

description: This dataset supports research to the natural history of Vanishing White Matter (VWM), and comprises longitudinal survey data from &gt;460 genetically and MRI-confirmed, untreated participants across the world.
description: Data collection began in 2004 on paper. In 2016, it transitioned to electronic entry in Access, and since 2019, data have been collected using Castor EDC. 

The database includes validated scales, such as the Health Utility Index (HUI), Guy’s Neurological Disability Scale (GNDS), Gross Motor Function Classification System – Extended & Revised (GMFCS-E&R), Communication Function Classification System (CFCS), and Manual Ability Classification System (MACS), alongside our self-developed, unvalidated VWM questionnaire covering a broad range of topics. 
The Gross Motor Function Classification in Metachromatic Leucodystrophy (GMFC-MLD), Expressive Language Function Classification in Metachromatic Leucodystrophy (ELFC-MLD), Eating and Drinking Ability Classification System (EDACS), EuroQol-5 Dimension (EQ5D) 5 level (-5L) and child/adolescent (-Y) versions were incorporated later.
 
While most participants reside outside the Netherlands and have never attended the hospital, a subset underwent clinical visits during which the Modified Rankin Scale (MRS) and Vineland-3 were additionally administered.
DOI: 10.15468/dl.btdjqb
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyoscyamus niger",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052673-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4q2d76
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyoscyamus niger",
 "Country is Belarus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 40 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052674-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8mttre
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyoscyamus niger",
 "Country is Bulgaria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 59 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052675-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zyqjhk
title: Occurrence Download

description: A dataset containing 132455 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acer rubrum"
 ]
}

 The dataset includes 132455 records from 440 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052617-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ybm6v3
title: Occurrence Download

description: A dataset containing 31714 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acer tataricum"
 ]
}

 The dataset includes 31714 records from 581 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052676-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16614096
title: BETA-FOR_SP4_SoilCN_2023

description: At each subpatch of all patches, we took a soil core with 10 cm depth and 5 cm diameter. It is important to note that we only roughly removed litter and the soil cores include organic and mineral soil together. After sieving the soil at 2 mm, soil samples were dried at 30 °C for 72 h, ground, and then transferred into tin capsules (20 mg each). The analysis was conducted using dry combustion with a VarioEL cube IR elemental analyzer. The C and N content were provided as the percentage of the element's mass relative to the sample mass, and the C:N ratio was calculated from these values.
description: Variables Description

*patchLabelBETAFOR: unique BETA-FOR patch label

*subPatch: number of the sub-patch where the measurement was performed

*decimalLatitude: latitudinal coordinates of the patch in decimals

*decimalLongitude:  longitudinal coordinates of the patch in decimals

*samplingProtocol: The way the samples were taken

*startSampling: The date when the sampling period started

*endSampling: The date when the sampling period ended

*measurementType: The nature of the measurement, in this case soil nitrogen, carbon, or C:N ratio

*measurementValue: The value of the respective measurement type for the sub patch

*measurementUnit: The unit the measurement value is in

*measurementMethod: A description of the method or protocol used to determine the measurement

*measurementDeterminedBy: person who performed the measurement
DOI: 10.5281/zenodo.16614097
title: BETA-FOR_SP4_SoilCN_2023

description: At each subpatch of all patches, we took a soil core with 10 cm depth and 5 cm diameter. It is important to note that we only roughly removed litter and the soil cores include organic and mineral soil together. After sieving the soil at 2 mm, soil samples were dried at 30 °C for 72 h, ground, and then transferred into tin capsules (20 mg each). The analysis was conducted using dry combustion with a VarioEL cube IR elemental analyzer. The C and N content were provided as the percentage of the element's mass relative to the sample mass, and the C:N ratio was calculated from these values.
description: Variables Description

*patchLabelBETAFOR: unique BETA-FOR patch label

*subPatch: number of the sub-patch where the measurement was performed

*decimalLatitude: latitudinal coordinates of the patch in decimals

*decimalLongitude:  longitudinal coordinates of the patch in decimals

*samplingProtocol: The way the samples were taken

*startSampling: The date when the sampling period started

*endSampling: The date when the sampling period ended

*measurementType: The nature of the measurement, in this case soil nitrogen, carbon, or C:N ratio

*measurementValue: The value of the respective measurement type for the sub patch

*measurementUnit: The unit the measurement value is in

*measurementMethod: A description of the method or protocol used to determine the measurement

*measurementDeterminedBy: person who performed the measurement