cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.75nn1932/6
title: Audio5_ChippingSparrow

description: Sample recording of chipping sparrow vocalizations.
DOI: 10.5061/dryad.75nn1932/7
title: Audio6_HouseFinch

description: Sample recording of house finch vocalizations.
DOI: 10.5061/dryad.75nn1932/8
title: Audio7_Black-headedGrosbeak

description: Sample recording of black-headed grosbeak vocalizations.
DOI: 10.5061/dryad.75nn1932/9
title: Audio8_WesternTanager

description: Sample recording of western tanager vocalizations.
DOI: 10.5061/dryad.80mb4/1
title: pedigree

description: contains pedigree information
DOI: 10.5061/dryad.80mb4/2
title: dominance_all

description: contains data on dominance rank and aggression rates in greylag geese of all ages and all relevant fixed and random effects (see read_me.txt)
DOI: 10.5061/dryad.80mb4/3
title: dominance_juveniles

description: contains data on dominance rank and aggression rates in juvenile greylag geese and all relevant fixed and random effects (see read_me.txt)
DOI: 10.5061/dryad.80mb4/4
title: dominance_pairs

description: contains data on dominance rank and aggression rates in adult, paired greylag geese and all relevant fixed and random effects (see read_me.txt)
DOI: 10.5061/dryad.80mb4/5
title: dominance_4trait

description: contains data on dominance rank and aggression rates in juvenile and paired adult male and female greylag geese and all relevant fixed and random effects (see read_me.txt)
DOI: 10.5061/dryad.dh03r/1
title: B6x129(F1) stimulation formalin test

description: Behavioral response analzed in 5 min segments to different type of stimulation (or no-stimulation) conditions. Details on the stimulation location and the stimulation protocol are described in the paper.
DOI: 10.5061/dryad.f45q2/1
title: MEC-13-0732 raw data

description: The file contains ingested plant species/Groups detected in wireworms (Agriotes larvae, Elateridae, Coleoptera) - seven plants were targeted and the wireworms were identified molecularly to species Level. They were collected in perennial grasslands in Central Europe, Tyrol, Austria in summer 2008 and 2009.
DOI: 10.5061/dryad.kd2n4/1
title: Master alignment of the main dataset

description: This dataset includes concatenated sequence data of mitochondrial rRNA and cytb, and nuclear rag1, sreb2, and zic1 for 222 gobioid specimens
DOI: 10.5061/dryad.kd2n4/2
title: Master alignment of the root dataset

description: This dataset includes concatenated sequence data of mitochondrial rRNA and cytb, and nuclear rag1, sreb2, and zic1 for 29 gobioid specimens and 2 outgroups
DOI: 10.5061/dryad.m1vt9/1
title: BEAST trees file

description: This is a nexus-formatted text file containing the full posterior set of Banksia phylogenies (n=6000) from a bayesian analysis of chloroplast DNA data using BEAST.
DOI: 10.5061/dryad.md023/1
title: Files for validating the solutions given by the PAM and full implementations of the minimum ADCL algorithm
DOI: 10.5061/dryad.md023/2
title: Files for assessing the behavior of ADCL minimization under bootstrapping
DOI: 10.5061/dryad.md023/3
title: Files for comparing performance of PAM and full implementations of the minimum ADCL algorithm on trees of varying size
DOI: 10.5061/dryad.mr221/1
title: Nicrophorinae locality and specimen data

description: See ReadMe file.
DOI: 10.5061/dryad.q329b/1
title: allData_121010

description: txt file with population-cross type means and standard errors of a common garden study on Arabidopsis lyrata with the following columns: oberservationNo, population, site, expectedHeterozygosity, localDensity [m-2], multilocusOutcrossingRate (tm), crossType, multiplicative performance I (MPI), multiplicative performance II (MPII), seedLength [mm], germination (binary), infection 2009 (binary), time to flowering 2009 [days], pedicels 2009 (binary), fruits 2009 (binary), pollenNumber per flower 2009, pollenSize 2009 [um], time to flowering 2010 [days], noPedicels to 2010, noFruits to 2010, noPedicels to 2012, noFruits to 2012.
DOI: 10.5061/dryad.q64g3/1
title: Supplemental Table 1

description: Database of figured and reposited Helicoprion specimens. Column abbreviation and notes: #, database index number; Inst Acro, Institutional acronym for specimen; Spec., Specimen number; Notes & Alt name, notation on synonymous specimen numbers and counterparts (cp); Locality#, registered locality number; Lat, latitude in decimal degrees; Long, longitude in decimal degrees; Place, town or region; Country, country; Museum, institutional abbreviations listed below; Stratigraphy, formation and member; Stage, based on current stratigraphy, Art=Artinskian, Kung=Kungurian, Leon= Leonardian, Olen=Olenekian, Road=Roadian, Wolf=Wolfcampanian; Original ID, specimen diagnosis according to reference or repository, [H]=holotype, [L]=lectotype; Whorls, specimen quality including number of volutions (w), or number of teeth (t), whether partial (p) or a complete whorl (c), frags=fragments; Diagnosis, our assessment according to the emended diagnoses presented in this paper. Institutional Abbreviations.—AMNH, American Museum of Natural History, New York, USA; BANFF, Banff Park, Alberta, Canada; ER, Ekaterinburg Regional Natural History Museum, Russia; FCMP, Museo de Paleontologia de la Facultad de Ciencias, Universidad Nacional Autonoma de Mexico; FH, Fort Hall Reservation, Shoshone Bannock Tribal Museum, Idaho, USA; FIELD, Field Museum, Chicago, USA; GSA, Geological Society of America Office, Denver, USA; IMNH, Idaho Museum of Natural History, Pocatello, USA; KCL, Kesen-numa City Library, Japan; KSU, Geological Museum of Kazan State University, Russia ; LACM , Los Angeles County Museum, USA; MNH, Museum of Natural History, University of Kansas, Lawrence, USA; NHMU, Natural History Museum of Utah, Salt Lake City, USA; NMC, Canadian Museum of Nature, Ottawa, Canada; PIN, Palaeontological Institute of the Russian Academy of Sciences, Moscow, Russia; PERM, Perm Regional Natural History Museum, Russia; PMO, Paleontologisk Museum, Oslo, Norway; PRIV, Private Collection; TsNIGR, Central Research Geological Museum, St.-Petersburg, Russia; UCMP, University of California Museum of Paleontology, Berkeley, USA; UFH, Utah Field House of Natural History State Park Museum, Vernal, USA; UMUT, University Museum, University of Tokyo, Japan; UNR, W.M. Keck Earth Science and Mineral Engineering Museum, University of Nevada, Reno, USA; USNM, National Museum of Natural History, Washington DC, USA; YIGM, Yichang Institute of Geology and Mineral Resources, China; WAMAG, Western Australian Museum, Perth, Australia.
DOI: 10.5061/dryad.q64g3/2
title: Supplemental table 2

description: First two principal components for PC analyses in Figures 9 and 10. Current and previous species diagnosis reported where appropriate. *Abbrev: (H) holotype, (L) lectotype, (T) type; **ital.=estimated tooth number from Table 7.
DOI: 10.5061/dryad.rd4j5/1
title: McGeeWainwright_Convergence

description: File contains standard length and Suction Index measurements for all fish used in the study, as well as the final Suction Index calculation. Please email the primary author for more information, or if your calculated Suction Index values do not match the values listed in the paper.
DOI: 10.5061/dryad.rd645561/1
title: MicrosatelliteData

description: Data generated at Victoria Sork Lab, University of California Los Angeles (UCLA). This file contains the genotypes for 9 microsatellite loci and 128 individuals collected in 20 populations of Engelmann oak (Quercus engelmannii)
DOI: 10.5061/dryad.rm3n1/1
title: 4CL sequences

description: Sequences for the locus 4CL.
DOI: 10.5061/dryad.rm3n1/2
title: EBS sequences

description: Sequences for the locus EBS.
DOI: 10.5061/dryad.rm3n1/3
title: M002 sequences

description: Sequences for the locus M002.
DOI: 10.5061/dryad.rm3n1/4
title: PCH sequences

description: Sequences for the locus PCH.
DOI: 10.5061/dryad.rm857/1
title: Scottish weekend admissions for Dryad

description: See notes tab for description of data and source.
DOI: 10.5061/dryad.sv33f/21
title: Unrarefied OTU table L3

description: Unrarefied class x sampleID tables (there are 6 tables for 6 taxonomic levels, species through phylum).
DOI: 10.5061/dryad.sv33f/22
title: Unrarefied OTU table L2

description: Unrarefied phylum x sampleID tables (there are 6 tables for 6 taxonomic levels, species through phylum).
DOI: 10.5061/dryad.sv33f/23
title: raw sequences

description: raw sequence file, fasta format
DOI: 10.5061/dryad.sv33f/24
title: quality file

description: quality score file
DOI: 10.5061/dryad.sv33f/25
title: observed_species_L2

description: Phylum richness calculated for 100 rarefaction plots
DOI: 10.5061/dryad.sv33f/26
title: observed_species_L3

description: Class richness calculated for 100 rarefaction plots (there are 6 tables for 6 taxonomic levels, species through phylum. L7=species, L2=phylum)
DOI: 10.5061/dryad.sv33f/27
title: observed_species_L4

description: Order richness calculated for 100 rarefaction plots (there are 6 tables for 6 taxonomic levels, species through phylum. L7=species, L2=phylum)
DOI: 10.5061/dryad.sv33f/28
title: observed_species_L5

description: Family richness calculated for 100 rarefaction plots (there are 6 tables for 6 taxonomic levels, species through phylum. L7=species, L2=phylum)
DOI: 10.5061/dryad.sv33f/29
title: observed_species_L6

description: Genus richness calculated for 100 rarefaction plots (there are 6 tables for 6 taxonomic levels, species through phylum. L7=species, L2=phylum)
DOI: 10.5061/dryad.sv515/2
title: online-data
DOI: 10.5061/dryad.t3q8b/2
title: Morphological data_Cichlidae

description: Morphological data matrix from Supplemental Information
DOI: 10.5061/dryad.1t4n5/1
title: genotypedata

description: Microsatellite data of the 170 workers of Reticulitermes flavipes genotyped.
DOI: 10.5061/dryad.3dr8k/1
title: AFLP from two contrasting habitat types

description: We get these data from AFLP. In our study, we compare the genetic diversity and differentiation between two contrasting habitat types of Betula ermanii. Our results indicated that the two different type show different genetic structure. We presume that this species evolve under natural selection.
DOI: 10.5061/dryad.3hq923hn/1
title: glycines_dryad

description: Population genetic data for Aphis glycines using 26 loci (20 SNPs and 6 microsatellites) in GenePop format
DOI: 10.5061/dryad.4s286/1
title: Murren_et_al_AS_UPLOADED_DRYAD

description: see readme file
DOI: 10.5061/dryad.4tm3v/1
title: Phenotypic and genotypic data, as well as pedigree-based relatedness, of experimental plants exposed to naturally occurring pollinators

description: Data obtained in the greenhouse, experimental garden and laboratory by direct measurement. Relatedness inferred from pedigree data. Format: Excel file. Variable definition is provided in the accompanying Read Me file.
DOI: 10.5061/dryad.51np1/1
title: alignment_blast

description: data set of 249 analysed sequences - alignment from BlastAlign 1.2 (under default parameters)
DOI: 10.5061/dryad.51np1/2
title: alignment_muscle

description: data set of 249 analysed sequences - alignment from Muscle 3.6 (under the gap opening parameter -600 and gap extension parameter -40)
DOI: 10.5061/dryad.5r2f1n05/1
title: Land Iguana Sequences

description: Contains bacterial community 454 pyrosequencing reads obtained from fecal samples of land iguanas (LI) living on Isla Fernandina (F), Isla Plaza Sur (P) and Isla Santa Fe (S) in the Galápagos Islands, Ecuador.
DOI: 10.5061/dryad.66mc094q/1
title: Supplementary Information including accession numbers
DOI: 10.5061/dryad.66mc094q/2
title: *BEAST input file Pipa calibration JC codon model
DOI: 10.5061/dryad.6s67t/1
title: Joshua tree presence points

description: Tab-delimited text file containing latitude and longitude coordinates in decimal degrees for 5,765 points at which Joshua tree (Yucca brevifolia) has been observed, and the species of pollinator moth (Tegeticula synthetica or T. antithetica) present at those sites.
DOI: 10.5061/dryad.75nn1932/10
title: Audio9_MourningDove

description: Sample recording of mourning dove vocalizations.
DOI: 10.5061/dryad.7p1k8304/1
title: Supplementary Materials

description: This file include all Supplementary Figures, the Supplementary Figures Captions and Supplementary Table 1.
DOI: 10.5061/dryad.7p1k8304/2
title: Amino acid alignment

description: This is the amino acid alignment used in Rota-Stabelli et al. (in review) Syst. Biol.
DOI: 10.5061/dryad.7p1k8304/3
title: Nucleotide alignment

description: This is the nucleotide alignment used in Rota-Stabelli e al. (in review Syst. Biol.).  It is originally from Regier et al. 2010 - Nature.  See Main text for details.
DOI: 10.5061/dryad.8415f/1
title: Arizona field data

description: Field data from the Arizona site, including species name, proportion of adult wing chord size at fledging (propWCfldg), clutch size (cs), nestling period length in days (nstl), log10 nestling period, log10 adult mass, aerial foraging (0= no, 1=yes).
DOI: 10.5061/dryad.9js2m/1
title: Vertical distribution measurements of Meroplanktonic larvae and the environment. A Canadian Healthy Oceans Network Population Connectivity Project, PC-06.

description: This dataset was collected in the field (using a plankton pump, CTD, fluorometer and ADCP) for a MSc Thesis and 1 publication. This dataset contains the standardized abundance (count m-3) of meroplanktonic larvae (Gastropods, Bivalves, Bryozoans, Brachyurans, Polychaetes, Carideans, and Asteroids), temperature, salinity, density, fluorescence, calculated Richardson number and current velocities (north-south, east-west, and vertical velocities) at 6 (3, 6, 9, 12, 18 and 24 m) depths, every 2 h over a 36- and 26-h sampling period, in St. George’s Bay, Nova Scotia, Canada. The dataset also included lunar cycle, diel period, tidal state, date, time, sampling depth, sampling depth range, and more.
DOI: 10.5061/dryad.cn66t/1
title: Cuneifolia_data_files_readme_files
DOI: 10.5061/dryad.gv13nm40/1
title: NBR genotyoes

description: Microsatellite genotype data for bighorn sheep (Ovis canadensis) from National Bison Range in Montana, USA. Columns A-C contain locus names, linkage group (lg), and position on the linkage group respectively. Subsequent columns are individual genotypes. For individual genotypes row 1 indicates if the individual is an NBR founder (ParentPop1), a transplanted individual (ParentPop2), or a hybrid progeny (Hybrid); row 2 is the individual ID corresponding to the modeling table. Missing data is coded as NA/NA.
DOI: 10.5061/dryad.gv13nm40/2
title: NBR modeling_table

description: Data used for analyses of geographic ancestry and individual fitness. Column headings for columns A-G are as follows: ID = individual ID (corresponding to that in genotype data, Gender = sex of the sheep, h.index = hybrid index value as calculated from INTROGRESS analyses, Year_Birth = year of birth or introduction, Longevity = longevity as of 2010, Progeny = number of progeny that individual contributed to the pedigree, Introduced = binary indicator if that sheep was introduced to the population or not. Subsequent columns are genotypes at each locus coded as a factor with three levels (0, 1, or 2) corresponding to the number of alleles predicted to be derived from founders during the INTROGRESS analysis. Missing data is coded as NA.
DOI: 10.5061/dryad.j272c/1
title: Taylor&Hoffman2-Genotypes-afterNullAlleles_Genepop
DOI: 10.5061/dryad.j272c/2
title: Taylor&Hoffman3-FIG-2-DATA
DOI: 10.5061/dryad.j272c/3
title: Taylor&Hoffman4a-Diversity-Modeling-DATA
DOI: 10.5061/dryad.j272c/4
title: Taylor&Hoffman4b-FIG-3-AB-DATA
DOI: 10.5061/dryad.k6s7h/1
title: Repeatability of honeyguide egg size
DOI: 10.5061/dryad.k6s7h/2
title: Dimensions of honeyguide and host eggs
DOI: 10.5061/dryad.k6s7h/3
title: Data from Experiment 1
DOI: 10.5061/dryad.md023/4
title: Files for assessing the behavior of ADCL algorithms with chimeric sequences
DOI: 10.5061/dryad.md023/5
title: Files for evaluating PAM and full implementations of the minimum ADCL algorithm at various values of the parameter `k`
DOI: 10.5061/dryad.md023/6
title: Supplementary figures
DOI: 10.5061/dryad.n15r5/1
title: Orcutt & Hopkins_Supplementary

description: Raw body size data (based on dental measurements) used in this study.  Institutional abbreviations for repositories given in text.  Measurements were made by John Orcutt unless otherwise indicated; some were taken from published sources and some were identified and measured by Joshua Samuels (JXS).  2LPL = second lower premolar length, 3LPL = third lower premolar length, 4LPL = fourth lower premolar length, 1LML = first lower molar length, 2LML = second lower molar length, 3LML = third lower molar length, 2UML = second upper molar length; measurements given in millimeters.
DOI: 10.5061/dryad.pt384/1
title: dataset

description: Variables used in statistical analyses
DOI: 10.5061/dryad.qn514810/1
title: Yoshizawa et al_archived data_0209-2012

description: Raw data from the laboratory experiments. Abbreviations are described in the main manuscript.
DOI: 10.5061/dryad.qn514810/3
title: processMitoSim_all

description: This perl code calculates the stats of the data produced by Yoshizawa_etal_simuPOP_code.py. Further descriptions are seen at the comments in this file.
DOI: 10.5061/dryad.qn514810/4
title: Yoshizawa_etal_simuPOP_code

description: The python code is to simulate the introgression event of mitochondria by running simuPOP program. Detailed description are seen in 'comments' in this code.
DOI: 10.5061/dryad.qq055/1
title: MaxwellEtAl_WCFF_MicrosatGenotypes

description: Microsatellite genotypes (14 loci) for individuals of the western cherry fruit fly (Rhagoletis indifferens) from British Columbia, Canada. Microsatellite allele sizes are given in bp. Sex of each individual is given as: M = male, F = female. Location details can be found in: Maxwell et al. 2014. Agricultural and Forest Entomology (DOI: 10.1111/afe.12029)
DOI: 10.5061/dryad.rc071b2v/1
title: Correlational.selection data

description: File containing the data used in the analysis plus some descriptors. For the full reference see the journal paper.
DOI: 10.5061/dryad.rh8gr/1
title: TriversPalestisManningDataset

description: Excel file
DOI: 10.5061/dryad.rm3n1/5
title: SB16 sequences

description: Sequences for the locus SB16.
DOI: 10.5061/dryad.rm3n1/6
title: SB29 sequences

description: Sequences for the locus SB29.
DOI: 10.5061/dryad.rm3n1/7
title: SB62 sequences

description: Sequences for the locus SB62.
DOI: 10.5061/dryad.rm3n1/8
title: SE1390 sequences

description: Sequences for the locus SE1390.
DOI: 10.5061/dryad.sv33f/30
title: observed_species_L7

description: OTU richness calculated for 100 rarefaction plots (there are 6 tables for 6 taxonomic levels, species through phylum. L7=species, L2=phylum)
DOI: 10.5061/dryad.sv33f/31
title: simpson_evenness_L2

description: Phylum evenness calculated for 100 rarefaction plots (there are 6 tables for 6 taxonomic levels, species through phylum. L7=species, L2=phylum)
DOI: 10.5061/dryad.sv33f/32
title: simpson_evenness_L3

description: Class evenness calculated for 100 rarefaction plots (there are 6 tables for 6 taxonomic levels, species through phylum. L7=species, L2=phylum)
DOI: 10.5061/dryad.sv33f/33
title: simpson_evenness_L4

description: Order evenness calculated for 100 rarefaction plots (there are 6 tables for 6 taxonomic levels, species through phylum. L7=species, L2=phylum)
DOI: 10.5061/dryad.sv33f/34
title: simpson_evenness_L5

description: Family evenness calculated for 100 rarefaction plots (there are 6 tables for 6 taxonomic levels, species through phylum. L7=species, L2=phylum)
DOI: 10.5061/dryad.sv33f/35
title: simpson_evenness_L6

description: Genus evenness calculated for 100 rarefaction plots (there are 6 tables for 6 taxonomic levels, species through phylum. L7=species, L2=phylum)
DOI: 10.5061/dryad.sv33f/36
title: simpson_evenness_L7

description: Species evenness calculated for 100 rarefaction plots (there are 6 tables for 6 taxonomic levels, species through phylum. L7=species, L2=phylum)
DOI: 10.5061/dryad.sv33f/37
title: simpson_diversity_L2

description: Phylum level Simpson's diversity calculated for 100 rarefaction plots (there are 6 tables for 6 taxonomic levels, species through phylum. L7=species, L2=phylum)
DOI: 10.5061/dryad.sv515/3
title: online-appendix-v1.1
DOI: 10.5061/dryad.tq09m/1
title: Code and simulation output

description: This tar.gz file contains directories with R code and simulation output for all figures and data described in the paper.  See the README.pdf file for a full description of contents.
DOI: 10.5061/dryad.20nf5/1
title: Feeding trials of Lygaeus equestris

description: Data from laboratory experiment. Data file created with Excel 2010.
DOI: 10.5061/dryad.322bb/1
title: Calf approach responses in the cognitive bias task

description: Calf approach responses to each screen for each session before and after disbudding (%).  Approach responses have been averaged across trials (23 each of positive and negative screens; 5 of each ambigous screen) within each session
DOI: 10.5061/dryad.39np8rd7/1
title: Archive-Data

description: Excel file containing data from Semibalanus balanoides collected from Long Island, NY and Balanus glandula collected from San Juan Island, WA.  Data includes Block ID, Block number, site name, number treatment, density treatment, overall treatment, test volume, egg mass (F), teste mass, penis mass, total male mass (M), the relative proportion of male mass (Q), and transformed values of numerical data.
DOI: 10.5061/dryad.3dr8k/2
title: MSAP data get from Betula ermanii

description: We get these data from AFLP. In our study, we compare the epigenetic diversity and differentiation between two contrasting habitat types of Betula ermanii. Our results indicated that the two different type show different epigenetic structure. We presume that this species evolve under natural selection.
DOI: 10.5061/dryad.5r2f1n05/2
title: Marine Iguana Sequences

description: Contains bacterial community 454 pyrosequencing reads obtained from fecal samples of marine iguanas (MI) living on Isla Fernandina (F), Isla Plaza Sur (P), Isla Santa Fe (S), and two sites on Isla San Cristobal - La Lobería (L) and Punta Carola (C) in the Galápagos Islands, Ecuador.
DOI: 10.5061/dryad.5vd2560f/3
title: Total Evidence Alignment Plus Trees

description: Includes data for all 61 loci. For mtDNA, 3rd coding positions are RY coded. Trees estimated from this dataset (Figure 4a, b, and c) are also included.
DOI: 10.5061/dryad.5vd2560f/4
title: Supplementary Tables and Figure

description: Four supplementary tables describing samples used in this study, gene regions and primer sequences, model information and topology for loci and joint posteriors on gene trees. One supplementary figure describing gene tree expectations.
DOI: 10.5061/dryad.5vd2560f/5
title: Smithetal.Novel40_LocusDataset

description: This is a nexus file including sequence data and tree files for the 40 novel loci sequenced for this study. Charsets for each locus are provided.
DOI: 10.5061/dryad.65tn4/1
title: Robustness Supplement

description: The zip file contains all supplemental files, including supplemental figures, a C program (with README.txt file) for computing false positive, false negative, etc. clades for an estimated tree and reference tree, and list of alignment lengths for loci in the 8881-locus great ape dataset.
DOI: 10.5061/dryad.66mc094q/10
title: *BEAST input file Pipa and Root calibration GTR codon model
DOI: 10.5061/dryad.66mc094q/11
title: BEST input file JC model
DOI: 10.5061/dryad.66mc094q/3
title: *BEAST input file Pipa calibration HKY codon model
DOI: 10.5061/dryad.66mc094q/4
title: *BEAST input file Pipa calibration GTR codon model
DOI: 10.5061/dryad.66mc094q/5
title: *BEAST input file Root calibration JC codon model
DOI: 10.5061/dryad.66mc094q/6
title: *BEAST input file Root calibration HKY codon model
DOI: 10.5061/dryad.66mc094q/7
title: *BEAST input file Root calibration GTR codon model
DOI: 10.5061/dryad.66mc094q/8
title: *BEAST input file Pipa and Root calibration JC codon model
DOI: 10.5061/dryad.66mc094q/9
title: *BEAST input file Pipa and Root calibration HKY codon model