cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15121/1869425
title: Finite Element Analysis (FEA) for Water-Foam Fracturing of Granite Rock

description: In addition to the foam data that were obtained from literature and that were collected from the current study, simulation data was also generated from finite element analysis (FEA) conducted in this study using COMSOL Multiphysics software. The FEA models were built to simulate the experiments conducted at Oak Ridge National Laboratory (ORNL) on cement and granite samples. In these FEA models, temperature was kept at ambient while the pressure profile resembled the loading conditions during the ORNL experiments, where pressure was either monotonically increased or applied cyclically. The cement material was used as a model material and was used to study Von Mises stress and tensile stress distribution for different bore hole length geometry using a parametric sweep with water as fracturing fluid using solid-fluid interaction module. For the granite material, FEA models were developed for stress analysis of cylindrical samples with water or foam fluids. The solid mechanics module in COMSOL was implemented to solve for Von Mises stress and tensile stress. The fluid-structure interaction module was implemented to solve for water-foam interaction on granite cylinder with addition of fluid-loading on structure, i.e., large deformation in solid mechanics with no impact on fluid deformation. Foam was considered as a pseudo single-phase compressible fluid for which material properties were calculated from water and gas (nitrogen) phases. The density of foam is calculated as a function of the densities of water and nitrogen, while viscosity is a function of temperature. Four types of FEA analyses were modelled: 1. Monotonic injection with water 2. Monotonic injection with foam 3. Cyclic injection with water 4. Cyclic injection with foam All the COMSOL files are converted to a zip file which is save in .mph.
DOI: 10.48370/ofd/2zk3x1
title: Apodemus flavicollis - 3376, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1953-08-24, in: Białowieża National Park, Poland. Material type:
DOI: 10.15121/1869426
title: Literature Data on Foam Fracturing Fluid

description: At the beginning of this project, the Temple team spent significant effort to collect data relevant to foam fracturing. More than 40 articles/reports were found in the open literature that reported the properties of aqueous foams under various testing conditions. The foam properties included viscosity and stability in terms of half-life, while were influenced by the foam quality, shear rate, temperature, pressure, as well as surfactants and additives used in making the foam base solutions. As a result, more than 1100 data points were collected, which are included in a master worksheet named "Literature data on Foam Fracturing Fluid". These data points are organized based on following parameters: 1. Literature source, including authors and publication year 2. Gaseous phase (e.g. CO2, N2) 3. Liquid phase (e.g. tap water, DI water, salt water) 4. Surfactants and their concentrations 6. Additives 7. Foam quality 8. Pressure 9. Temperature 10. Viscosity 11. Foam stability, which was characterized by its half-life: Half-life Foam study data base with data analysis was completed and a webpage is designed hosted on public server at https://surfactant-dashboard.herokuapp.com
DOI: 10.48370/ofd/xczlof
title: Apodemus flavicollis - 29143, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1962-09-15, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/6grawt
title: Apodemus flavicollis - 54216, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1966-09-01, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/szlnrr
title: Apodemus flavicollis - 15694, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-11-09, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/b3mb97
title: Apodemus flavicollis - 137824, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1980-10-07, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/cytkou
title: Apodemus flavicollis - 35830, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1964-07-08, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/osgngy
title: Apodemus flavicollis - 153528, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1986-09-24, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/tylato
title: Apodemus flavicollis - 15024, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-09-28, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/kqlcpc
title: Apodemus flavicollis - 87487, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1969-10-17, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/xg3zfy
title: Apodemus flavicollis - 167687, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1999-10-02, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/rwfmmg
title: Apodemus flavicollis - 11904, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-07-29, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/xbabqx
title: Apodemus flavicollis - 24722, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1961-05-30, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/a2u1ys
title: Apodemus flavicollis - 124247, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1977-05-05, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/i5dpaw
title: Apodemus flavicollis - 150459, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1985-05-08, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/u3azm9
title: Apodemus flavicollis - 147313, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1983-07-21, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/087dah
title: Apodemus flavicollis - 72750, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-04-19, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/n1kgey
title: Apodemus flavicollis - 46198, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1965-09-27, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/zvujr4
title: Apodemus flavicollis - 166647, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1997-09-30, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/qxr7le
title: Apodemus flavicollis - 54337, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1966-09-07, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/txalw8
title: Apodemus flavicollis - 160458, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1990-09-28, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/vrtyp2
title: Apodemus flavicollis - 110459, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1973-07-25, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/5ehsni
title: Apodemus flavicollis - 23650, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1960-03-17, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/8af2vo
title: Apodemus flavicollis - 159284, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1990-05-18, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/toqre6
title: Apodemus flavicollis - 149168, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1983-10-17, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/m2bswc
title: Apodemus flavicollis - 120277, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1976-09-16, in: Białowieża National Park, Poland. Material type:
DOI: 10.6084/m9.figshare.19878466.v1
title: koniqMS2.h5

description: dfgsdfg
DOI: 10.6084/m9.figshare.19878466
title: koniqMS2.h5

description: dfgsdfg
DOI: 10.6084/m9.figshare.19149026
title: Contaminant Concentrations in Salish Sea Seaweeds Dataset.xlsx

description: This dataset contains concentrations of metals and organic contaminants from the edible seaweeds <i>Fucus distichus</i>, <i>Fucus spiralis</i>, and <i>Nereocystis luetkeana</i> that were collected from the Salish Sea in the summer of 2015. It includes data summarized in the “Chemical Contaminant Levels in Edible Seaweeds of the Salish Sea and Implications for their Consumption” by J.L. Hahn, K.L. Van Alstyne, J.K. Gaydos, L.K. Wallis, J.E. West, G.M. Ylitalo, R.H. Poppenga, J.L. Bolton, S.J. Hollenhorst, D. McBride, and R. Sofield, which has been submitted to <i>Plos One</i>, as well as additional unpublished data. When citing this data set, please also cite the <i>Plos One</i> paper, if appropriate. Information about the collection of the seaweeds and measurement of contaminants is available in the <i>PLoS One</i> paper.
DOI: 10.6084/m9.figshare.19878472
title: koniqMS3.h5

description: asdfsadf
DOI: 10.6084/m9.figshare.19878472.v1
title: koniqMS3.h5

description: asdfsadf
DOI: 10.17041/drp/1460802
title: Columbia University Synthetic Power Grid with Geographical Coordinates

description: The following data set is generated based on the statistical properties of the US Western Interconnection. This data set consists of four tables, each contained in a single comma-delimited CSV file. The files contain the data regarding the buses and lines in the synthetic network generated based on the topology of the Western Interconnection (WI) power grid.
DOI: 10.17041/drp/1471682
title: Columbia University Synthetic Power Grid with Geographical Coordinates

description: The following data set is generated based on the statistical properties of the US Western Interconnection. This data set consists of four tables, each contained in a single comma-delimited CSV file. The files contain the data regarding the buses and lines in the synthetic network generated based on the topology of the Western Interconnection (WI) power grid.
DOI: 10.25584/data.2019-03.704/1501917
title: Data to Accompany "Metabotyping as a Stopover in Genome-to-Phenome Mapping"

description: This file contains all of the genotypic and metabolomic data analyzed in the article "Metabotyping as a Stopover in Genome-to-Phenome Mapping" published in Scientific Reportsvolume 9, Article number: 1858 (2019). The code that we used to analyze these data and produce the results and figures in this article can be found here https://github.com/PNNL-PREMIS/PREMIS-metabotyping .
DOI: 10.6084/m9.figshare.19878469
title: koniqMS.h5

description: sdfasdf
DOI: 10.6084/m9.figshare.19878469.v1
title: koniqMS.h5

description: sdfasdf
DOI: 10.25584/data.2019-02.700/1506698
title: Zegeye 2019 Amplicon data

description: We investigated the successional dynamics of a soil microbiome during 21-weeks of enrichment on chitin and its monomer, N-acetylglucosamine. We examined succession of the soil communities in a physically heterogeneous soil matrix as well as a homogeneous liquid medium. We used native marginal soils from Prosser, Washington, as a basis for these studies and this dataset represents amplicon (16S and ITS) analysis of these communities over time during succession.
DOI: 10.25584/data.2019-03.709/1509487
title: PNNL Systems Engineering Building VOLTTRON data set, collected between March and July of 2018

description: This dataset contains time series data collected from devices and sensors in the PNNL Systems Engineering Building collected using the VOLTTRON platform. The data includes readings from HVAC, power, and lighting systems and was collected between March and July of 2018.
DOI: 10.25584/data.2019-08.931/1558461
title: Soil environmental variables

description: This file contains soil environmental variables. Soils along a salinity gradient from a coastal forested floodplain (Beaver Creek in Western Washington) were analyzed for physicochemical properties.
DOI: 10.25584/data.2019-08.929/1558462
title: FTICR-MS data

description: Soils along a salinity gradient from a coastal forested floodplain (Beaver Creek in Western Washington) were analyzed for their organic compound signatures using Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FTICR). This contains 12T FTICR reports of water and chloroform fraction of soils, processed data using FREDA, data filtering steps in FREDA, data used to generate van Krevelen plots, and code for analyzing FTICR data and performing statistics.
DOI: 10.25584/data.2019-08.928/1558463
title: 16S rRNA Amplicon sequence data and community assembly process file

description: Soils along a salinity gradient from a coastal forested floodplain (Beaver Creek in Western Washington) were analyzed for their microbial community composition and community assembly processes. These files contain processed 16S rRNA amplicon sequences into OTU table, the corresponding tree file, metadata, community assembly process analysis and results, microbial phyla abundances, and codes evaluating BNTI indices and community assembly process estimates.
DOI: 10.25584/cptac/1601822
title: SupplementalFilesCPTAC_ProteogenomicOvarianPaper_2020_02_27

description: Interactive plots (in HTML/javascript) as supplemental files for the paper titled: Proteogenomic Characterization of Ovarian High-Grade Serous Cancer Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability. The plots represent the differential expression of proteins (File 1) and phosphopeptides (File 2) comparing tumor to normal tissue.
DOI: 10.25584/watmg1/1635002
title: WA-TmG.1.0

description: As part of the Pacific Northwest National Laboratory’s (PNNL) Science Focus Area program we are investigating the impact of environmental change on microbial community function in grassland soils. To enable a comprehensive survey of the metabolic potential of complex soil microbiomes, we performed ultra-deep metagenome sequencing, collecting &gt;1 terabase of sequence data from grassland soils representing different precipitation regimes. Soil samples were collected from Washington State University’s Irrigated Agriculture Research and Extension Center (IAREC) in Prosser, WA.
DOI: 10.25584/kstmg1/1635004
title: KS-TmG.1.0

description: As part of the Pacific Northwest National Laboratory’s (PNNL) Science Focus Area program we are investigating the impact of environmental change on microbial community function in grassland soils. To enable a comprehensive survey of the metabolic potential of complex soil microbiomes, we performed ultra-deep metagenome sequencing, collecting &gt;1 terabase of sequence data from grassland soils representing different precipitation regimes. Intermediate precipitation regime soil (rain-fed and irrigated agriculture) was collected from Konza Prairie Biological Station (KPBS).
DOI: 10.25584/iatmg1/1635005
title: IA-TmG.1.0

description: As part of the Pacific Northwest National Laboratory’s (PNNL) Science Focus Area program we are investigating the impact of environmental change on microbial community function in grassland soils. To enable a comprehensive survey of the metabolic potential of complex soil microbiomes, we performed ultra-deep metagenome sequencing, collecting &gt;1 terabase of sequence data from grassland soils representing different precipitation regimes. Frequent precipitation regime soil (rain-fed and tile-drained agriculture) was collected from Iowa State University’s Comparison of Biofuel Systems (COBS).
DOI: 10.25584/waisocmsc1/1635272
title: WA-IsoC_MSC1.1.0

description: The soil microbiome is central to the cycling of carbon and other nutrients and to the promotion of plant growth. Despite its importance, analysis of the soil microbiome is difficult due to its sheer complexity, with thousands of interacting species. Here, we reduced this complexity by developing model soil microbial consortia that are simpler and more amenable to experimental analysis but still represent important microbial functions of the native soil ecosystem. Samples were collected from an arid grassland soil and microbial communities (consisting mainly of bacterial species) were enriched on agar plates containing chitin as the main carbon source. Chitin was chosen because it is an abundant carbon and nitrogen polymer in soil that often requires the coordinated action of several microorganisms for complete metabolic degradation. Several soil consortia were derived that had tractable richness (30-50 OTUs) with diverse phyla representative of the native soil, including Actinobacteria, Bacteroidetes, Firmicutes, Proteobacteria and Verrucomicrobia. The resulting consortia can be stored as glycerol or lyophilized stocks at -80° C and revived while retaining community composition, greatly increasing their use as tools for the research community at large. One of the consortia that was particularly stable was chosen as a model soil consortium (MSC-1) for further analysis. MSC-1 species interactions were studied using both pairwise co-cultivation in liquid media and during growth in soil under several perturbations. Co-abundance analyses highlighted interspecies interactions and helped to define keystone species, including Mycobacterium, Rhodococcus, and Rhizobiales taxa. These experiments demonstrate the success of an approach based on naturally enriching a community of interacting species that can be stored, revived, and shared. The knowledge gained from querying these communities and their interactions will enable better understanding of the soil microbiome and the roles these interactions play in this environment.
DOI: 10.5066/p98g0fs2
title: Hillslope hydrologic monitoring data following the 2009 Station Fire, Los Angeles County, California, November 2015 to June 2017

description: This data release includes time-series data from two monitoring stations in drainage basins burned in the 2009 Station Fire, Los Angeles County, California. Both stations are located near the upper boundary of their respective watershed and were installed to study the effects of vegetation recovery on hillslope hydrology and debris-flow occurrence. The data include 1-minute time series of rainfall, soil water content, soil temperature, and soil matric potential recorded at two locations at both stations: AS1, AS2, DC1, DC2. The two locations at each site have the primary distinction of being in a non-vegetated location (AS1, DC1) or under vegetated canopy (AS2, DC2). The soil water content measurements were made at 3 depths below the ground surface in each pit (10, 25, and 50 cm). Soil temperature measurements were made in each pit (10 cm). Soil matric potential was measured with a tensiometer at AS1 (50 cm) and DC2 (50 cm), and includes an integrated soil temperature reading from the same instrument. All available data from the time period is included, but occasional lapses exist in the time-series due to various system issues and/or maintenance. The tensiometer data includes erroneous values where in-situ matric potential is outside of the range of the instrument and a data quality flag has been added to aid in the interpretation of these. Details of this study are described in the journal article: Smith, J.B., and J.W. Kean. 2018. Long-term soil-water tension measurements in semiarid environments: a method for automated tensiometer refilling. Vadose Zone J. 17:180070. doi:10.2136/vzj2018.04.0070.
DOI: 10.25584/premisbc/1638703
title: Beaver Creek Soil Incubation Experiment July 2018

description: The data accompanies the manuscript Antecedent conditions determine the biogeochemical response of coastal soils to seawater exposure" that evaluates impact of periodic seawater inundations of soils from in a first-order coastal watershed in the Olympic Peninsula of Washington state, USA. Samples were collected in July 2018 and subjected to laboratory incubations. The files contain a read me file, data files including soil chemical characteristics, FTICR-MS molecular and data file, FTICR-MS derived processed data from FREDA, reference file for transformation analysis, LC-MS derived molecular feature abundance data, gas flux data for multiple regression and R codes. The files are related to the publication and have been used in the results and analyses section.