cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.1271
title: Data from: Mitochondrial and microsatellite DNA markers reveal a Balkanic origin for the highly invasive Horse-Chestnut leaf miner Cameraria ohridella (Lepidoptera, Gracillariidae)

description: Biological invasions usually start with a small number of founder
 individuals. These founders are likely to represent a small fraction of
 the total genetic diversity found in the source population. Our study set
 out to trace genetically the geographical origin of the horse-chestnut
 leafminer, Cameraria ohridella, an invasive microlepidopteran whose area
 of origin is still unkown. Since its discovery in Macedonia twenty years
 ago, this insect has experienced an explosive westward range expansion,
 progressively colonizing all of Central and Western Europe. We used
 cytochrome oxidase I sequences (DNA barcode fragment) and a set of six
 polymorphic microsatellites to assess the genetic variability of C.
 ohridella populations, and to test the hypothesis that C. ohridella
 derives from the southern Balkans (Albania, Macedonia and Greece).
 Analysis of mtDNA of 486 individuals from 88 localities allowed us to
 identify 25 geographically structured haplotypes. In addition, 480
 individuals from 16 populations from Europe and the southern Balkans were
 genotyped for 6 polymorphic microsatellite loci. High haplotype diversity
 and low measures of nucleotide diversities including a significantly
 negative Tajima's D indicate that C. ohridella has experienced rapid
 population expansion during its dispersal across Europe. Both mtDNA and
 microsatellites show a reduction in genetic diversity of C. ohridella
 populations sampled from artificial habitats (e.g. planted trees in public
 parks, gardens, along roads in urban or sub-urban areas) across Europe
 compared to C. ohridella sampled in natural stands of horse-chestnuts in
 the southern Balkans. These findings suggest that European populations of
 C. ohridella may indeed derive from the southern Balkans.
description: data_set_480ind_six_microsat.xls480 individuals from 16 populations from Europe and the southern Balkans were genotyped for 6 polymorphic microsatellite loci.
DOI: 10.5281/zenodo.18371153
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Wilhelm Hemprich, http://www.wikidata.org/entity/Q62240. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q62240
DOI: 10.5281/zenodo.18381799
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Wilhelm Hemprich, http://www.wikidata.org/entity/Q62240. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q62240
DOI: 10.5061/dryad.t22jv
title: Data from: Prevalence and treatment of sexually transmitted infections in men followed by urologists in Germany – a cross sectional study with 347,090 men

description: Aim: The goal of this retrospective analysis was to study the prevalence
 and treatment of the most common sexually transmitted infections (STI) in
 men followed by urologists in Germany. Methods: This study included a
 total of 347,090 men followed in 71 urology practices in Germany between
 2013 and 2015. The first outcome was the prevalence of individuals
 diagnosed with STI between 2013 and 2015. The following eight types of STI
 infections were included in the analysis: chlamydial infection, gonococcal
 infection, anogenital warts, anogenital herpes infection, trichomoniasis,
 ulcus molle, phthiriasis, and syphilis. The second outcome was the
 prevalence of individuals with STI who received an appropriate therapy
 within 90 days of their initial STI diagnosis. Results: The most frequent
 STI was anogenital warts (0.64%), whereas the least frequent STI was
 syphilis (0.03%). The median age at diagnosis ranged from 30.3 years for
 chlamydia infection to 47.5 years for trichomoniasis. The proportion of
 individuals receiving treatment was the highest for trichomoniasis (90.6%)
 and the lowest for anogenital warts (49.9%). Conclusions: Overall,
 approximately 1.25% of men followed in urology practices in Germany
 between 2013 and 2015 were diagnosed with at least one STI. Further
 research is needed to gain a better understanding of the factors
 potentially associated with the risk of being diagnosed with STI in this
 setting in Germany. Moreover, there is a need for enabling higher rates of
 diagnosis and thus treatment of infected persons.
description: STDOutatients with at least
 one sexually transmitted disease diagnosed ifollowed by urologists in
 Germany between 2013 and 2015
DOI: 10.5061/dryad.4n704
title: Data from: Rapid evolution of larval life history, adult immune function and flight muscles in a poleward moving damselfly

description: Although a growing number of studies have documented the evolution of
 adult dispersal-related traits at the range edge of poleward-expanding
 species, we know little about evolutionary changes in immune function or
 traits expressed by nondispersing larvae. We investigated differentiation
 in larval (growth and development) and adult traits (immune function and
 flight-related traits) between replicated core and edge populations of the
 poleward-moving damselfly Coenagrion scitulum. These traits were measured
 on individuals reared in a common garden experiment at two different food
 levels, as allocation trade-offs may be easier to detect under energy
 shortage. Edge individuals had a faster larval life history (growth and
 development rates), a higher adult immune function and a nearly
 significant higher relative flight muscle mass. Most of the
 differentiation between core and edge populations remained and edge
 populations had a higher relative flight muscle mass when corrected for
 latitude-specific thermal regimes, and hence could likely be attributed to
 the range expansion process per se. We here for the first time document a
 higher immune function in individuals at the expansion front of a
 poleward-expanding species and documented the rarely investigated
 evolution of faster life histories during range expansion. The rapid
 multivariate evolution in these ecological relevant traits between edge
 and core populations is expected to translate into changed ecological
 interactions and therefore has the potential to generate novel
 eco-evolutionary dynamics at the expansion front.
description: Full
 datasetLife-history, flight
 morphology and immune function variables. All date were collected from
 laboratory reared animals from eggs collected in 2 populations at the core
 and 2 populations at the expansion front of Coenagrion scitulum. See
 article and appendix S3 for the protocols to quantify the response
 variables.dataset_JEB.xls
DOI: 10.5061/dryad.tj01t
title: Data from: Sperm performance in conspecific and heterospecific female fluid

description: Divergent sexual selection within allopatric populations may result in
 divergent sexual phenotypes, which can act as reproductive barriers
 between populations upon secondary contact. This hypothesis has been most
 tested on traits involved in precopulatory sexual selection, with less
 work focusing on traits that act after copulation and before fertilization
 (i.e., postcopulatory prezygotic traits), particularly in internally
 fertilizing vertebrates. However, postcopulatory sexual selection within
 species can also drive trait divergence, resulting in reduced performance
 of heterospecific sperm within the female reproductive tract. Such
 incompatibilities, arising as a by-product of divergent postcopulatory
 sexual selection in allopatry, can represent reproductive barriers,
 analogous to species-assortative mating preferences. Here, we tested for
 postcopulatory prezygotic reproductive barriers between three pairs of
 taxa with diverged sperm phenotypes and moderate-to-high opportunity for
 postcopulatory sexual selection (barn swallows Hirundo rustica versus sand
 martins Riparia riparia, two subspecies of bluethroats, Luscinia svecica
 svecica versus L. s. namnetum, and great tits Parus major versus blue tits
 Cyanistes caeruleus). We tested sperm swimming performance in fluid from
 the outer reproductive tract of females, because the greatest reduction in
 sperm number in birds occurs as sperm swim across the vagina. Contrary to
 our expectations, sperm swam equally well in fluid from conspecific and
 heterospecific females, suggesting that postcopulatory prezygotic barriers
 do not act between these taxon pairs, at this stage between copulation and
 fertilization. We therefore suggest that divergence in sperm phenotypes in
 allopatry is insufficient to cause widespread postcopulatory prezygotic
 barriers in the form of impaired sperm swimming performance in passerine
 birds.
description: All data associated with
 Cramer et al. Ecology and EvolutionPlease see the readme
 file.CramerEtAlEcolEvolData.zip
DOI: 10.5281/zenodo.18381802
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Carl Friedrich Roewer, http://www.wikidata.org/entity/Q70682. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q70682
DOI: 10.5281/zenodo.18319999
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Carl Friedrich Roewer, http://www.wikidata.org/entity/Q70682. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q70682
DOI: 10.5061/dryad.kn37p
title: Data from: Factors affecting Japanese retirees’ healthcare service utilisation in Malaysia – a qualitative study

description: Objective: Living overseas in another culture, the retirees need to adapt
 to new environment but often this causes difficulties, particularly among
 the elderly who are having health problems. This study aims to examine
 factors affecting healthcare service utilisation among Japanese retirees
 in Malaysia. Design: We conducted focus group discussions with Japanese
 retirees and in-depth interviews with government officials, travel agents,
 hospital managers and Japanese interpreters in the selected private
 hospitals. Guided by the Andersen Healthcare Utilisation Model, we
 analysed the data using the directed content analysis method. Setting: We
 interviewed participants at Japan Clubs and their offices. Participants:
 They were thirty Japanese retirees who live in Kuala Lumpur and Ipoh, and
 eight officers representing services providers. Results: Three themes,
 health beliefs, medical symptoms and health insurance were identified
 which align with the theory. Additionally, language barriers, voluntary
 health repatriation to Japan and receiving psychological/psychiatric
 support and treatment were found as unique factors which influence
 healthcare utilisation among Japanese retirees. Conclusions: The
 healthcare utilisation of Japanese retirees in Malaysia could be partially
 explained by the Andersen Healthcare Utilisation Model, together with some
 factors that were unique findings to this study. Healthcare utilisation
 among Japanese retirees in Malaysia could be improved by alleviating
 negative health beliefs through awareness programmes for Japanese retirees
 about the healthcare systems and cultural aspects of medical care in
 Malaysia.
description: Discussion Guide for
 FGDDiscussion Guide for
 FGD20160218InterviewGuide(FGD).pdfInterview Guide for Government OfficialsInterview Guide for Government Officials20160218InterviewGuide(IDIGovt).pdfInterview GuideInterview Guide20160218InterviewGuideIDI.pdf
DOI: 10.5061/dryad.8891
title: Data from: Species delimitation in fungal endophyte diversity studies and its implications in ecological and biogeographic inferences

description: The estimation of species diversity in fungal endophyte communities is
 based either on species counts or the assignment of operational taxonomic
 units (OTUs). Consequently, the application of different species
 recognition criteria affects not only diversity estimates but also the
 ecological hypotheses that arise from those observations. The main
 objective of the study was to examine how the choice and number of genetic
 markers and species delimitation criteria influences biodiversity
 estimates. Here, we compare approaches to defining species boundaries in
 three dominant species complexes of tropical endophytes, specially
 Colletotrichum cf. gloeosporioides, Pestalotiopsis cf. microspora, and
 Trichoderma cf. harzianum, from two Amazonian trees: Hevea brasiliensis
 and H. guianensis. Molecular tools were used to describe and compare the
 diversity of the different assemblages. Multi-locus phylogenetic analyses
 (gpd, ITS, and tef1) and modern techniques for phylogenetic species
 delimitation were overlaid with ecological data to recognize putative
 species or OTUs. The results demonstrate that ITS alone generally
 underestimates the number of species predicted by other nuclear loci.
 These results question the use of ITS and arbitrary divergence thresholds
 for species delimitation.
description: Colletotrichum_gloesporioides_combined_matrixColletotrichum agg. gloeosporioides - Nexus file, aligned, concatenated datasets:complete ITS, tef-1, and gpd loci.Colletotrichum_combined.nxsPestalotiopsis_microspora_combined_matrixPestalotiopsis agg. microspora - Nexus file, aligned, concatenated datasets: ITS, tef-1, and gpd loci.Pestalotiopsis_combined.nxsTrichoderma_harzianum_combined_matrixTrichoderma agg. harzianum - Nexus file, aligned, concatenated datasets: ITS, tef-1, and gpd loci.Harzianum_Combined.nex
DOI: 10.5061/dryad.8332
title: Data from: Examination of hemiplasy, homoplasy and phylogenetic discordance in chromosomal evolution of the Bovidae

description: Robertsonian chromosomal fusions predominate in shaping the genomes of
 many species of Bovidae. These and other cytogenetic data (from 52 taxa
 representing 51 species and 9 tribes of Bovidae) were (i) examined for
 usefulness in defining phylogenetic relationships and (ii) subsequently
 mapped to a consensus tree based on mitochondrial and nuclear DNA gene
 sequences with divergence dates of the corresponding species calculated
 from cytochrome b sequences. This permitted persistence time estimates for
 the various rearrangements. The chromosomal data resulted in an
 unsupported higher-level topology, but with recognition of the monophyly
 of some genera and tribes within Bovidae. The distribution and temporal
 spread of character states on the species tree is suggestive of a
 restricted role for hemiplasy (the retention of an ancestral chromosomal
 polymorphism through multiple speciation events) and for introgression
 (resulting from secondary contact among taxa), processes that can
 potentially lead to phylogenetic discordance. We conclude that the most
 probable interpretation for these data is that genuine karyotypic
 homoplasy predominates, but that hemiplasy (and/or introgression) is a
 realistic hypothesis for the observed patterns of several shared
 characters in Bovidae.
description: Online Appendix
 1**Note: A corrected
 version of this file was added on 2011-03-23 and can be found at
 http://dx.doi.org/10.5061/dryad.8332/3. Character 9 (telo-centro 1;5),
 incorrectly included as an autapomorphy for Tragelaphus imberbis, has been
 removed in the corrected Online Appendix 1 thus reducing the number of
 characters to 155.** Character matrix used in the present study.
 Autapomorphies are in red, hemiplasies in pink, homoplasies in green,
 synapomorphies in blue, and ambiguous characters in
 grey.Online
 Appendix2Mapping of the
 homoplasic characters on the dated consensus tree. O = absence of
 character 145.Corrected Online
 Appendix 1**Note: this is
 corrected version of the character matrix file.** Character matrix used in
 the present study. Autapomorphies are in red, hemiplasies in pink,
 homoplasies in green, synapomorphies in blue, and ambiguous characters in
 grey.Character-matrix-cyto-corrected.pdf
DOI: 10.5061/dryad.h4953
title: Data from: Offspring size and reproductive allocation in harvester ants

description: A fundamental decision that an organism must make is how to allocate
 resources to offspring, both with respect to size and to number. The two
 major theoretical approaches to this problem, optimal offspring size and
 optimistic brood size models, make different predictions that may be
 reconciled by including how offspring fitness is related to size. We
 extended the reasoning of Trivers and Willard (1973) to derive a general
 model of how parents should allocate additional resources with respect to
 the number of males and females produced, and among individuals of each
 sex, based on the fitness payoffs of each. We then predicted how harvester
 ant colonies should invest additional resources, and tested three
 hypotheses derived from our model, using data from three years of food
 supplementation bracketed by six years without food addition. All major
 results were predicted by our model: Food supplementation increased the
 number of reproductives produced. Male, but not female, size increased
 with food addition; the greatest increases in male size occurred in
 colonies that made small females. We discuss how use of a fitness
 landscape improves quantitative predictions about allocation decisions.
 When parents can invest differentially in offspring of different types,
 the best strategy will depend on parental state as well as the effect of
 investment on offspring fitness.
description: Data from reproductive
 allocation studyThe data file is twelve
 columns. FNEST-a numeric code for the colony. BLOCK-a numeric code for
 which block the colony is in. YEAR-the year for the data. CARB-code for
 whether colony received a seed supplement in that year (2) or did not (1).
 PROTEIN-code for whether a colony received a mealworm supplement (2) or
 did not (1) during that year. SIZE- the size of the colony in that summer.
 The following six columns are the number (MN, FN), size in gms (MWT, FWT)
 and variation in size of males and females (MSD, FSD) produced during that
 year. A 0 for number indicates no reproduction, a . indicates data for
 that colony not collected during that year.data
 dryad.txt
DOI: 10.5061/dryad.kv1hd
title: Data from: Evolution and conservation on top of the world: Phylogeography of the Marbled Water Frog (Telmatobius marmoratus species complex; Anura, Telmatobiidae) in protected areas of Chile

description: The Andean Altiplano has served as a complex setting throughout its
 history, driving dynamic processes of diversification in several taxa. We
 investigated phylogeographic processes in the Telmatobius marmoratus
 species complex occurring in this region by studying the geographic
 patterns of genetic variability, genealogies, and historical migration,
 using the cytochrome b (cyt-b) gene as a marker. DNA sequences from
 Telmatobius gigas and Telmatobius culeus, Bolivian species with an
 uncertain taxonomic status, were also included. Additionally, we evaluated
 the phylogenetic diversity (PD) represented within Chilean protected areas
 and the complementary contribution from unprotected populations.
 Phylogenetic reconstructions from 148 cyt-b sequences revealed 4 main
 clades, one of which corresponded to T. culeus. T. gigas was part of T.
 marmoratus clade indicating paraphyletic relationships. Haplotypes from
 Chilean and Bolivian sites were not reciprocally monophyletic. Geographic
 distribution of lineages, spatial Bayesian analysis, and migration
 patterns indicated that T. marmoratus displays a weaker geographic
 structure than expected based on habitat distribution and physiological
 requirements. Demographic and statistical phylogeography analyses pointed
 out to a scenario of recent population expansion and high connectivity
 events of a more recent age than the post Last Glacial Maximum, probably
 associated to more humid events in Altiplano. PD of T. marmoratus
 populations within protected areas represents 55.6% of the total estimated
 PD. The unprotected populations that would contribute the most to PD are
 Caquena and Quebe (21%). Recent evolutionary processes and paleoclimatic
 changes, potentially driving shifts in habitat connectivity levels and
 population sizes, could explain the phylogeographic patterns recovered
 herein.
description: HaplotypeList_TelmaHaplotype list detailing redundant sequences with the respective codes.Telma_ArlequinInput file for analyses with software ArlequinTelma_migrateInput file for analyses with Migrate-nFull_Seq_TelmaCytb sequences in fasta format. 148 sequences.Coor_GenelandGeographic coordinates for each Cytb sequence used in Geneland analyses.Seq_GenelandInput file of Cytb sequences used in Geneland analyses.
DOI: 10.5061/dryad.5r0q8
title: Data from: Phenotypic plasticity drives a depth gradient in male conspicuousness in threespine stickleback, Gasterosteus aculeatus

description: Signal evolution is thought to depend on both a signal's
 detectability or conspicuousness (signal design) as well as any
 extractable information it may convey to a potential receiver (signal
 content). While theoretical and empirical work in sexual selection has
 largely focused on signal content, there has been a steady accrual of
 evidence that signal design is also important for trait evolution. Despite
 this, relatively little attention has been paid to spatial variation in
 the conspicuousness of a given signal, especially over small spatial
 scales (relative to an organism's dispersal distance). Here, we show
 that visual signals of male threespine stickleback vary in
 conspicuousness, depending on a male's nest depth within a given
 lake. Deeper-nesting males were typically more chromatically conspicuous
 than shallow nesting males. This trend is partly because all male
 stickleback are more conspicuous in deep optical environments. However,
 deep males are even more conspicuous than environmentally-driven null
 expectations, while shallow males tend to be disproportionally cryptic.
 Experimental manipulation of male nesting depth induced plastic changes in
 nuptial color that replicated the natural gradients in conspicuousness. We
 discuss a number of potential mechanisms that could produce depth
 gradients in conspicuousness in male stickleback, including concomitant
 depth gradients in diet, predation pressure, male/female density, female
 preference and opportunity for sexual selection.
description: DOWN_IRRVMDownwelling irradiance measurements for all lakes and depths.
DOI: 10.15468/dl.3qr8m2
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Panochthus tuberculatus"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000600-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.