cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2cp0cg
title: CCDC 2194935: Experimental Crystal Structure Determination

description: Related Article: Jonathan S. Foot, Alberto Buson, Mandar Deodhar, Alison D. Findlay, Alan D. Robertson, Craig I. Turner, Tin Yow, Wenbin Zhou, Wolfgang Jarolimek|2022|Bioorg.Med.Chem.Lett.|74|128942|doi:10.1016/j.bmcl.2022.128942
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20mg04
title: CCDC 1865735: Experimental Crystal Structure Determination

description: Related Article: Nóra V. May, G. Tamás Gál, Zsolt Szentendrei, Petra Bombicz, Valerio Di Marco|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.6358619
title: Confocal and micro-CT data of Nothattagenus burmiticus, holotype, NIGP164890

description: This dataset contains the raw confocal laser scanning microscopy (CLSM) slices and X-ray microtomography (micro-CT) slices for the holotype of <em>Nothattagenus burmiticus</em> (NIGP164890) from mid-Cretaceous Burmese amber. This dataset is associated with the publication "'<em>Attagenus</em>' <em>burmiticus</em> from mid-Cretaceous amber reinterpreted as a member of Orphilinae (Coleoptera: Dermestidae)" (DOI:10.11646/palaeoentomology.5.4.12). Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 488 nm Argon laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software. Micro-CT data were obtained with a Zeiss Xradia 520 Versa 3D X-ray microscope. Scanning parameters were as follows: isotropic voxel size, 2.7017 μm; power, 3 W; acceleration voltage, 40 kV; exposure time, 2.5 s; projections, 2501. The TIFF stack is provided.
DOI: 10.5281/zenodo.6358618
title: Confocal and micro-CT data of Nothattagenus burmiticus, holotype, NIGP164890

description: This dataset contains the raw confocal laser scanning microscopy (CLSM) slices and X-ray microtomography (micro-CT) slices for the holotype of <em>Nothattagenus burmiticus</em> (NIGP164890) from mid-Cretaceous Burmese amber. This dataset is associated with the publication "'<em>Attagenus</em>' <em>burmiticus</em> from mid-Cretaceous amber reinterpreted as a member of Orphilinae (Coleoptera: Dermestidae)" (DOI:10.11646/palaeoentomology.5.4.12). Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 488 nm Argon laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software. Micro-CT data were obtained with a Zeiss Xradia 520 Versa 3D X-ray microscope. Scanning parameters were as follows: isotropic voxel size, 2.7017 μm; power, 3 W; acceleration voltage, 40 kV; exposure time, 2.5 s; projections, 2501. The TIFF stack is provided.
DOI: 10.34740/kaggle/dsv/4152722
title: Oil Reserves and Discoveries since 2000
DOI: 10.15784/601605
title: ICECAP ice thickness data over the Darwin and Hatherton Glaciers, Transantarctic Mountains, Antarctica

description: HiCARS data collected over Darwin and Hatherton Glaciers during ICECAP Test Flight ICP1/F05
DOI: 10.5281/zenodo.4831759
title: barechey/PredictIO.data:

description: ------------------------------------------------------------------------------------------------------------------------------------------<br> ------------------------------------------------------------------------------------------------------------------------------------------ <strong>This is an old version of the repository. Please go the last updated version !</strong> ------------------------------------------------------------------------------------------------------------------------------------------<br> ------------------------------------------------------------------------------------------------------------------------------------------ <strong>Leveraging Big Data of Immune Checkpoint Blockade Response Identifies Novel Potential Targets</strong> Repository of the sequencing data used for the PredictIO project. Yacine Bareche, Deirdre Kelly, Farnoosh Abbas-Aghababazadeh, Minoru Nakano, Parinaz Nasr Esfahani, Denis Tkachuk, Hassan Mohammad, Robert Samstein, Chung-Han Lee, Luc G. T. Morris, Philippe L. Bedard, Benjamin Haibe-Kains & John Stagg <strong>Summary</strong><br> Several genomics and gene expression signatures have been proposed as predictive biomarkers of clinical response to immune checkpoint blockade (ICB), with questionable reproducibility. We here report a large-scale comparative analysis of candidate biomarkers of ICB responses in a pan-cancer meta-analysis of over 3,500 ICB-treated patients representing 12 different tumor types. A web-application (predictIO.ca) was developed to allow researchers to further interrogate this data compendium. We tested the hypothesis that a de novo pan-cancer gene expression analysis would bring forth critical ICB resistance pathways and novel therapeutic targets. At the genomic level, we confirmed that non-synonymous tumour mutational burden (nsTMB) was significantly associated with ICB responses across tumor types, with the exception of kidney cancer. At the transcriptional level, 21 out of 39 published gene expression signatures were significantly associated with pan-cancer ICB responses. Strikingly, the predictive value of a de novo gene expression signature (referred to as PredictIO_100) composed of the top 100 genes most significantly associated with ICB responses at pan-cancer level was superior to nsTMB and other gene expression biomarkers. Within PredictIO_100, two genes, F2RL1 (encoding protease-activated receptor-2) and RBFOX2 (encoding RNA binding motif protein 9), were concomitantly associated with worse ICB clinical outcomes, T cell dysfunction in ICB-naive patients and resistance to dual PD-1/CTLA-4 blockade in preclinical mouse cancer models. Taken together, our study underlined the relative impact of candidate biomarkers of ICB responses in a large pan-cancer cohort, demonstrated the potential of de novo pan-cancer gene expression signatures and identified F2RL1, previously involved in tumor immune regulation, and RBFOX2, a critical regulator of epithelial-to-mesenchymal transition, as potential therapeutic targets to overcome ICB resistance.
DOI: 10.6084/m9.figshare.20805766
title: Cortisol in bitterling plasma

description: Data, readme file, R code and calibration curves for the data presneted in Reichard et al. paper on cortisol in the bitterlng plasma
DOI: 10.6084/m9.figshare.20805766.v1
title: Cortisol in bitterling plasma

description: Data, readme file, R code and calibration curves for the data presneted in Reichard et al. paper on cortisol in the bitterlng plasma
DOI: 10.17909/qpgk-0730
title: WFC3-HST images for DAWDs in the Southern hemisphere

description: Near-UV, optical and near-IR WFC3-HST images collected for a sample of candidate spectrophotometric DA white dwarfs distributed in the Southern celestial hemisphere. 13 of these will be established as standards. See Calamida et al. 2022.
DOI: 10.48420/20466069
title: British Museum Greek Inscriptions

description: non-Attic non-indigenous Greek inscriptions at the British Museum
DOI: 10.48420/20466069.v1
title: British Museum Greek Inscriptions

description: non-Attic non-indigenous Greek inscriptions at the British Museum
DOI: 10.48420/20466108
title: Fitzwilliam Greek Inscriptions

description: non-Attic, non-indigenous Greek inscriptions at the Fitzwilliam Museum, Cambridge
DOI: 10.48420/20466108.v1
title: Fitzwilliam Greek Inscriptions

description: non-Attic, non-indigenous Greek inscriptions at the Fitzwilliam Museum, Cambridge
DOI: 10.48420/20466087
title: Petrie Museum Greek Inscriptions

description: Inscriptions with Greek at the Petrie Museum, UCL <br> Images are being shared under a CC BY licence with the permission of the Petrie Museum.
DOI: 10.48420/20466087.v1
title: Petrie Museum Greek Inscriptions

description: Inscriptions with Greek at the Petrie Museum, UCL <br> Images are being shared under a CC BY licence with the permission of the Petrie Museum.
DOI: 10.5281/zenodo.6993160
title: Proccessed Data for the Pipelines of the Project "Multiomics and quantitative modelling disentangle diet, host, and microbiota contributions to the host metabolome"

description: Proccessed Data for the Pipelines of the Project "Multiomics and quantitative modelling disentangle diet, host, and microbiota contributions to the host metabolome" Contents: Folder /metabolomics/ contains processed metabolomics data from the project: /metabolomics/metabolites_allions_combined_norm_intensity.csv - file containing normalized intensities of ions detected across tissues with six measurement methods.<br> /metabolomics/metabolites_allions_combined_formulas_with_metabolite_filters_spatial100clusters_with_mean.csv - file containing metabolite attribution to spatial clusters and mean intensity values across tissues and conditions. Folder /output/ contains example output of the pipelines: /output/model_results_SMOOTH_raw_2LIcoefHost1LIcoefbact_allions.csv - file containing estimated model parameters (intestinal flux and metabolic flux values) for the forward problem for metabolomics measurements in the GIT.<br> /output/model_results_SMOOTH_normbyabsmax_reciprocal_problem_allions.csv - file containing estimated model parameters for the reverse problem (metabolite intensities) for the parameters estimated with the forward problem.<br> /output/model_results_SMOOTH_normbyabsmax_2LIcoefHost1LIcoefbact_allions.csv - file containing estimated model parameters (intestinal flux and metabolic flux values) for the forward problem for metabolomics measurements in the GIT, normalized by absolute maximum value.<br> /output/model_results_SMOOTH_normbyabsmax_ONLYMETCOEF_2LIcoefHost1LIcoefbact_allions.csv - file containing estimated model parameters (only metabolic flux values) for the forward problem for metabolomics measurements in the GIT, normalized by absolute maximum value.<br> /output/table_hierarchical_clustering_groups.csv - file containing attribution of the annotated metabolites to groups according to hierarchical clustering of the normalized model parameters.<br> /output/cgo_clustergrams_of_model_coefficients.mat - matlab object containing clustergram of the normalized model parameters and manually derived sub-clustergrams corresponding to different largest parameter values.
DOI: 10.14469/hpc/8174
title: t-Bu TS1 (9)

description: TS1, b3lyp+GD3BJ/Def2-SVPP, SCRF=THF, ΔG = -1712.699326, ΔΔG = 7.19, ΔΔΔG = 1.55
DOI: 10.14469/hpc/8184
title: tBu TS2 (14)

description: TS2, b3lyp+GD3BJ/Def2-SVPP, SCRF=THF, ΔG = -1712.7018 ΔΔG = 5.64
DOI: 10.14469/hpc/9214
title: (S,R)-TS4/D b3lyp/Def2-SVPP, three THF solvents G =-1944.888714

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/9231
title: Reactant b3lyp/Def2-svpp, three THF solvents G = -1944.895944

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/9232
title: (R,R)-TS1/A b3lyp/def2-svpp, three THF solvents TS g = -1944.885783

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/9202
title: (S,S)-TS3/C b3lyp/Def2-svpp, 2thf, G = -1712.698753

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/9205
title: (R,S)-TS2/B, wB97XD/Def2-svpp, 2thf, G = -1712.047408

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/9208
title: (R,S)-TS2/B b3lyp/Def2-svppp, three THF solvents TS G = -1944.890149

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/9212
title: (R,R)-TS1/C b3lyp/Def2-SVPP, three THF solvents TS G = -1944.886099

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/9213
title: (S,S)-TS3/C b3lyp/Def2-SVPP, three THF solvents TS G = -1944.885772

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/7970
title: Reactant b3lyp/Def2-svpp, two THF solvents, G = -1712.715051

description: Gaussian Calculation
DOI: 10.14469/hpc/9203
title: (S,R)-TS4/D, b3lyp/Def2-svpp, 2thf, G = -1712.702568

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/9204
title: (R,R)-TS1/A wB97XD/Def2-svpp, two THF solvents G = -1712.044147

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/9206
title: (S,S)-TS 3/C wB97XD/Def2-SVPP, two THF solvents G = -1712.044042

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/9207
title: (S,R)-TS4/D wB97XD/Def2-SVPP, two THF solvents G = -1712.047355

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/9822
title: Reactant b3lyp three THF solvents G = -1944.895944 =&gt; Def2-TZVPP G = -1947.181000

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/9421
title: TS1, b3lyp+GD3BJ/Def2-TZVPP, SCRF=THF, ΔG = -1712.699326, =&gt; G = -1714.704028

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/9525
title: TS1, b3lyp+GD3BJ/Def2-SVPP, SCRF=THF, ΔG = -1712.699326, =&gt; G = -1714.704028 =&gt; SVPP G = -1712.701415

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/9526
title: TS2 b3lyp three THF solvents TS G = -1944.890149 thf conformer =&gt; -1944.891033

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/9723
title: Product b3lyp/Def2-svpp, two THF solvents, G = -1712.715338 =&gt; Def2-TZVPP G = -1714.722124

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/9867
title: Product b3lyp three THF solvents Def2-SVPP, G = -1944.902225

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/9520
title: Product b3lyp/Def2-svpp, two THF solvents, G = -1712.715338

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/9553
title: TS A b3lyp three THF solvents, Def2-TZVPP ΔG = -1947.166035 Dispersion stabilisation -0.2671552398

description: Gaussian 16 (C01) calculation ΔG‡(195) -1947.124936
DOI: 10.14469/hpc/9721
title: Product b3lyp/Def2-svpp, two THF solvents, G = -1712.715051 =&gt; Def2-TZVPP G = -1714.720495

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/9724
title: TS2, b3lyp+GD3BJ/Def2-TZVPP G = -1714.704527

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/9823
title: TSB b3lyp three THF solvent, Def2-TZVPP ΔG = -1947.171251, Dispersion stabilisation -0.2689820447

description: Gaussian 16 (C01) calculation. ΔΔG‡ is 16.9 kcal/mol with respect to AdCHO(-).Li(thf)3 + AdCHO (-504.078334 + -1443.120276 = -1,947.198126) ΔG‡(195) -1947.130229
DOI: 10.5066/p9nxhc0v
title: Data for analysis of open removal models with temporary emigration and population dynamics to inform invasive animal management

description: This data release includes the data and computer code that we produced to fit two open-robust design removal models developed to simultaneously model population dynamics, temporary emigration, and imperfect detection: a random walk linear trend model (estimable without ancillary information), and a 2-age class integrated population model (IPM) that used prior information for age-structured vital rates and relative juvenile availability. To evaluate the effectiveness of management programs, we applied both models to a multi-year, removal trapping time-series data set of a large invasive lizard (Argentine black and white tegu, Salvator merianae) in three management areas of South Florida collected from 2016-1018. The data from these [...]
DOI: 10.34740/kaggle/dsv/4152860
title: CSRanking_ML_Vision_NLP_AI_Uni_Creds_USA
DOI: 10.34740/kaggle/dsv/4152904
title: Elon Musk Tweets
DOI: 10.15472/sxqrpp
title: Especies vegetales del arbolado urbano de Bogotá con interacciones de anidación, polinización y visita floral de la avifauna en el año 2020

description: La información relacionada está enmarcada en el contrato de prestación de servicios número 200 del 2020 del Jardín Botánico de Bogotá, en el que se registran el valor de cobertura de copa por especie y el número de interacciones de anidación, polinización y visita floral de la avifauna al arbolado urbano en el año 2020. Base de la investigación titulada "COMPOSICIÓN Y ESTRUCTURA FLORISTICA DEL ARBOLADO URBANO DE BOGOTÁ Y SU INFLUENCIA ESPACIAL EN LA DISPOSICIÓN DE INTERACIONES BIOTICAS".
description: El recurso está compuesto por 359 registros de plantas de cinco clases: Magnoliopsida, Liliopsida, Pinopsida, Polypodiopsida y Cycadopsida, los cuales se agrupan en 38 ordenes, 89 familias, 238 géneros y 273 especies. La mayoría de los registros del listado (n=311) se encuentran identificados a la categoría de especie, seguidos de la categoría de género. También se presentan las medidas del número de especies que anidan y el número de especies que polinizan.
DOI: 10.34740/kaggle/dsv/1460822
title: restaurant-recommendation-data
DOI: 10.15468/a7v3xa
title: A Checklist of flora of coastal environments in Cross-River State, Nigeria

description: This is a checklist of plants in Calabar, Akpabuyo, Odukpani and Bakasi areas of Cross-River State, Nigeria.
DOI: 10.5281/zenodo.7041545
title: Genomic data, part 2, of "Secondary contact rather than co-existence – Erebia butterflies in the Alps"

description: Secondary contact zones are ideal systems to study the processes that govern the evolution of reproductive barriers, especially at advanced stages of the speciation process. An increase in reproductive isolation resulting from selection against maladaptive hybrids is thought to contribute to reproductive barrier buildup in secondary contact zones. While such processes have been invoked for many systems, it remains unclear to which extent they influence contact zone dynamics in nature. Here, we study a very narrow contact zone between the butterfly species <em>Erebia</em> <em>cassioides </em>and <em>E.</em> <em>tyndarus</em> in the Swiss Alps. We quantified phenotypic traits related to wing shape and reproduction as well as ecology in order to compare the degree of intra- and interspecific differentiation. Even though only very few first-generation hybrids occur, we find no strong indications for current reinforcing selection, suggesting that if reinforcement occurred in our system, it likely operated in the past.<strong> </strong>Additionally, we show that both species differ less in their ecological niche at the contact zone than elsewhere, which could explain why co-existence between these butterflies may currently not be possible.
description: 112 BAM files, out of 235 total, used for genetic analyses in the manuscript. The other 123 BAM files can be found under 10.5281/zenodo.7041396, or using the same project title, part 1. RAD site locations (in bed format) were extracted from Lucek et al. 2020 (NCBI BioProject Accession PRJNA640280). Each individual has its own BAM file, aligned against a Erebia liger reference genome (NCBI GCA_917051295.2). File names indicate the field IDs, and correspond to table S1 of the manuscript.
DOI: 10.5281/zenodo.7041544
title: Genomic data, part 2, of "Secondary contact rather than co-existence – Erebia butterflies in the Alps"

description: Secondary contact zones are ideal systems to study the processes that govern the evolution of reproductive barriers, especially at advanced stages of the speciation process. An increase in reproductive isolation resulting from selection against maladaptive hybrids is thought to contribute to reproductive barrier buildup in secondary contact zones. While such processes have been invoked for many systems, it remains unclear to which extent they influence contact zone dynamics in nature. Here, we study a very narrow contact zone between the butterfly species <em>Erebia</em> <em>cassioides </em>and <em>E.</em> <em>tyndarus</em> in the Swiss Alps. We quantified phenotypic traits related to wing shape and reproduction as well as ecology in order to compare the degree of intra- and interspecific differentiation. Even though only very few first-generation hybrids occur, we find no strong indications for current reinforcing selection, suggesting that if reinforcement occurred in our system, it likely operated in the past.<strong> </strong>Additionally, we show that both species differ less in their ecological niche at the contact zone than elsewhere, which could explain why co-existence between these butterflies may currently not be possible.
description: 112 BAM files, out of 235 total, used for genetic analyses in the manuscript. The other 123 BAM files can be found under 10.5281/zenodo.7041396, or using the same project title, part 1. RAD site locations (in bed format) were extracted from Lucek et al. 2020 (NCBI BioProject Accession PRJNA640280). Each individual has its own BAM file, aligned against a Erebia liger reference genome (NCBI GCA_917051295.2). File names indicate the field IDs, and correspond to table S1 of the manuscript.
DOI: 10.34740/kaggle/dsv/1054117
title: Bangladesh Administrative Maps Geocoordinates
DOI: 10.34740/kaggle/dsv/4152900
title: Riped and Unriped Tomato Dataset
DOI: 10.34740/kaggle/dsv/1516076
title: Market Basket Analysis Dataset
DOI: 10.34740/kaggle/dsv/1441377
title: yelp-data
DOI: 10.6084/m9.figshare.20805937
title: Nitrification Raw Data

description: Raw data for Figure 4, 6, 7, 8
DOI: 10.6084/m9.figshare.20805937.v1
title: Nitrification Raw Data

description: Raw data for Figure 4, 6, 7, 8
DOI: 10.5066/p99elcec
title: Caloosahatchee River Nutrient Enrichment Mesocosms: Phytoplankton Taxonomic Quantification September 2019, June 2020, September 2020, February 2021

description: An interdisciplinary and multiagency study was undertaken to study harmful algal bloom (HAB) dynamics on the Caloosahatchee River, which drains to the west from Lake Okeechobee into the Gulf of Mexico. Algae and cyanobacteria play crucial roles in aquatic ecosystems, but under favorable environmental conditions certain taxa may experience population growth booms resulting in HABs. Four independent mesocosm experiments were conducted in September 2019, June 2020, September 2020, and February 2021 to capture natural temporal variability in water quality and phytoplankton assemblages. The experimental installation consisted of three floating metal cradles each containing four fiberglass chambers filled with native river water. The twelve [...]
DOI: 10.5281/zenodo.6617066
title: Space Weather Environment During the SpaceX Starlink Satellite Loss in February 2022

description: All data used in support of the journal article of the same name, including: operational NCEP/SWPC Whole Atmosphere Model (WAM), NRLMSISE-00, NRLMSIS 2.0, and DTM2020 fixed-height output of neutral atmospheric density in NetCDF format at ten-minute cadence observed and forecasted solar wind and geomagnetic space weather drivers in XML format NOAA Space Weather Prediction Center text advisory of geomagnetic activity select post-launch tracks (minimum of lat/lon/alt in one-minute cadence) of Starlink satellites for three launches: Group 4-4, December 2021; Group 4-5, January 2021; and Group 4-7, February 2021
DOI: 10.5281/zenodo.6617067
title: Space Weather Environment During the SpaceX Starlink Satellite Loss in February 2022

description: All data used in support of the journal article of the same name, including: operational NCEP/SWPC Whole Atmosphere Model (WAM) and NRLMSISE-00 fixed-height output of neutral atmospheric density in NetCDF format observed and forecasted solar wind and geomagnetic space weather drivers in XML format NOAA Space Weather Prediction Center text advisory of geomagnetic activity