cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25152803
title: Supplementary Material for: Applications of chemical bird repellents for crop and resource protection: a review and synthesis. (DeLiberto & Werner 2024; Wildlife Research).

description: <b>Supplementary Material</b>S1 Table. Seed repellent chemicals tested in less than 3 experiments (CAS number, Chemical name, Number of Experiments, Index of Success).S2a Table. Table of all repellent experiments (N = 2,994) describing chemical tested (CAS number, Chemical common name and ingredients, Product name, Manufacturer, Pesticide type and Formulation, Color/cue added, Seed/foliar use, Captive/field use, Concentration, Bird, Genus, Species, Resource Protected, Location, Reference and Repellency).S2b Table. References for S2a Table.S3 Table. Table of all bird repellent patents (N = 401) describing patented chemical(s) and patent assignee (Patent Number, Patent Title, Reference number, Chemical common name, Ingredients, Product name, Assignee, Compound, CAS number, Pesticide type and Formulation, Seed/foliar application, Species, Application, Resource, Location, Application Year, Publication Year, Simple patent family [total]).
DOI: 10.60955/j1f9-ex49
title: Province of Ontario Neurodevelopmental Disorders Network (POND) Registry Clinical Data
DOI: 10.60955/6bbr-f440
title: 5P: Predicting Persistent Postconcussive Problems in Pediatrics
DOI: 10.25919/3djp-8x24
title: Parkes pulsar observations with undefined project IDs for 2023OCTS_07

description: Parkes pulsar observations with undefined project IDs for 2023OCTS. This collection contains observations from project IDs PX117, PX118 and PX121.
DOI: 10.6073/pasta/949e50531ff0263a8c0a671e6792d752
title: Interagency Ecological Program: Phytoplankton monitoring in the Sacramento-San Joaquin Bay-Delta, collected by the Environmental Monitoring Program, 2008-2022

description: The State Water Resources Control Board (SWRCB) sets water quality objectives to protect beneficial uses of water in the Sacramento-San Joaquin Delta and Suisun Bay. These objectives are met by establishing standards mandated in water right permits issued to the Department of Water Resources and U.S. Bureau of Reclamation by the SWRCB. The standards include minimum Delta outflows, limits to Delta water export by the State Water Project (SWP) and the Central Valley Project (CVP), and maximum allowable salinity levels.
 
 In 1971, the State Water Resources Control Board (SWRCB) established Water Right Decision 1379 (D-1379). This Decision contained new water quality requirements for the San Francisco Bay-Delta Estuary. D-1379 was also the first water right decision to provide terms and conditions for a comprehensive monitoring program to routinely determine water quality conditions and changes in environmental conditions within the estuary. The monitoring program described in D-1379 was developed by the Stanford Research Institute through a contract with the SWRCB. Implementation of the monitoring program began in 1972, as SWRCB, DWR, and USBR met to define their individual responsibilities for various elements of the monitoring program. In 1978, amendments to water quality standards were implemented and resulted in Water Right Decision 1485 (D-1485). More recently these standards were again amended under the 1995 Water Quality Control Plan and Water Right Decision 1641 (D-1641) established in 1999. The SWP and CVP are currently operated to comply with the monitoring and reporting requirements described in D-1641. D-1641 requires DWR and USBR to conduct a comprehensive environmental monitoring program to determine compliance with the water quality standards and also to submit an annual report to SWRCB discussing data collected.
 
 The phytoplankton monitoring program is one element of DWR’s and USBR’s Environmental Monitoring Program (EMP) conducted under the Interagency Ecological Program (IEP) umbrella. The EMP also includes monitoring of water quality, zooplankton, and benthic organisms. The overall objective of the phytoplankton monitoring program is to determine the impacts of water project operations on the estuary. These impacts are interpreted by changes in phytoplankton diversity, abundance, and distribution associated with physical and other biological factors in the estuary.
 
 Links to other EMP datasets can be found [here](https://emp-des.github.io/emp-reports/data-links.html).
DOI: 10.6084/m9.figshare.25105943
title: Rural-Urban Disparities in Anemia Level among Pregnant Women in Nigeria: Data Collection Archive from NDHS

description: The concentration of hemoglobin in pregnant women plays a pivotal role in ensuring the well-being of both the mother and the fetus. Hemoglobin, a globular protein found in red blood cells, exhibits reversible binding with oxygen and carbon dioxide, facilitating the exchange of gases between the lungs and body tissues. Comprising four protein units, each hemoglobin molecule features a heme group with an iron atom at its core, forming an oxyhemoglobin complex when binding with oxygen in the lungs. In all living organisms, iron is an indispensable mineral crucial for DNA synthesis, cellular respiration, energy production, and oxygen transportation. Throughout pregnancy, the demand for oxygen intensifies due to fetal growth and hormonal changes in the mother's body system. This underscores the critical role of maintaining optimal hemoglobin levels to support the increased oxygen requirements during this dynamic physiological state.
DOI: 10.6084/m9.figshare.25105943.v5
title: Rural-Urban Disparities in Anemia Level among Pregnant Women in Nigeria: Data Collection Archive from NDHS

description: The concentration of hemoglobin in pregnant women plays a pivotal role in ensuring the well-being of both the mother and the fetus. Hemoglobin, a globular protein found in red blood cells, exhibits reversible binding with oxygen and carbon dioxide, facilitating the exchange of gases between the lungs and body tissues. Comprising four protein units, each hemoglobin molecule features a heme group with an iron atom at its core, forming an oxyhemoglobin complex when binding with oxygen in the lungs. In all living organisms, iron is an indispensable mineral crucial for DNA synthesis, cellular respiration, energy production, and oxygen transportation. Throughout pregnancy, the demand for oxygen intensifies due to fetal growth and hormonal changes in the mother's body system. This underscores the critical role of maintaining optimal hemoglobin levels to support the increased oxygen requirements during this dynamic physiological state.
DOI: 10.6084/m9.figshare.25105943.v4
title: Data Collection for Hemoglobin Study among Pregnant Women in Nigeria: Findings from Nigeria Demographic and Health Survey (NDHS) 2018

description: The concentration of hemoglobin in pregnant women plays a pivotal role in ensuring the well-being of both the mother and the fetus. Hemoglobin, a globular protein found in red blood cells, exhibits reversible binding with oxygen and carbon dioxide, facilitating the exchange of gases between the lungs and body tissues. Comprising four protein units, each hemoglobin molecule features a heme group with an iron atom at its core, forming an oxyhemoglobin complex when binding with oxygen in the lungs. In all living organisms, iron is an indispensable mineral crucial for DNA synthesis, cellular respiration, energy production, and oxygen transportation. Throughout pregnancy, the demand for oxygen intensifies due to fetal growth and hormonal changes in the mother's body system. This underscores the critical role of maintaining optimal hemoglobin levels to support the increased oxygen requirements during this dynamic physiological state.
DOI: 10.60955/ygbs-na17
title: Ontario Neurodegenerative Disease Research Initiative (ONDRI): Foundational Study Longitudinal Data - Release 2.0
DOI: 10.5883/bold:acl4843
title: Overview of Barcode Index Number - BOLD:ACL4843

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acz1032
title: Overview of Barcode Index Number - BOLD:ACZ1032

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.6084/m9.figshare.23972472
title: Barton, Evans, Lewis. (2024).Raw dataset.xlsx

description: These data represent counts of ant species collected from the Mulligans Flat - Goorooyarroo Woodland Experiment in March 2007.These data were used in the statistical analysis of species richness, community composition, and species occurrences presented in the manuscript: Barton, Evans, Lewis. (2023). Microhabitat drives ant community structure in a spatially heterogeneous grassy woodland. <i>Ecosphere</i>.
DOI: 10.6084/m9.figshare.23972472.v3
title: Barton, Evans, Lewis. (2024).Raw dataset.xlsx

description: These data represent counts of ant species collected from the Mulligans Flat - Goorooyarroo Woodland Experiment in March 2007.These data were used in the statistical analysis of species richness, community composition, and species occurrences presented in the manuscript: Barton, Evans, Lewis. (2023). Microhabitat drives ant community structure in a spatially heterogeneous grassy woodland. <i>Ecosphere</i>.
DOI: 10.6084/m9.figshare.23972472.v2
title: Raw dataset.xlsx

description: These data represent counts of ant species collected from the Mulligans Flat - Goorooyarroo Woodland Experiment in March 2007.These data were used in the statistical analysis of species richness, community composition, and species occurrences presented in the manuscript: Barton, Evans, Lewis. (2023). Microhabitat drives ant community structure in a spatially heterogeneous grassy woodland. <i>Ecosphere</i>.
DOI: 10.5066/p917r4f9
title: Sediment properties, charcoal counts, and radiocarbon dates from the Pallett Creek paleoseismic site, San Gabriel Mountains, California (ver. 2.0, February 2024)

description: This data release provides geochemical, sedimentological, and geochronological data from interbedded fluvial and marsh deposits and radiocarbon dates of the section spanning the last 1500 years from the Pallett Creek paleoseismic site, California. The samples were collected to support paleoenvironmental reconstruction of the site and refine several previous investigations of paleoearthquakes along the San Andreas Fault (Sieh, 1978; Sieh, 1984; Sieh et al., 1989; Biasi and Weldon, 1994; Scharer et al., 2011). Geochemical and sedimentological data include grain size, magnetic susceptibility, dry bulk density, percent total organic matter, and percent total carbonate at contiguous 1 cm spacing and carbon (total C) to nitrogen (total N) ratios and charcoal counts every 4 cm from a 6.2 m section at the Pallett Creek paleoseismic site (34.4557°, -117.8872°). The data release also includes new and previously published radiocarbon datasets and associated depths to facilitate inter-study comparison. These datasets include: (1) New accelerator mass spectrometry (AMS) radiocarbon dates, completed in 2021 and 2022, targeting layers with few or conflicting dates in previous studies at the Pallett Creek paleoseismic site. For these samples, the types of taxa present in selected layers was determined. (2) AMS dates originally reported in Scharer et al. (2011) are included with amended d13C fractionation corrections and are assigned depths to the 6.2 m section at the Pallett Creek paleoseismic site. (3) Depths are assigned for conventional radiocarbon dates previously reported in Sieh (1978), Sieh et al. (1984), Sieh et al. (1989) and Biasi and Weldon (1994). The depth estimates enable use of the original studies with the newer stratigraphic and age data provided in the data release. (4) New radiocarbon dates from the same alluvial surface as the Pallett Creek paleoseismic site that are exposed ~1 km upstream (34.4536°, -117.8980°). This report should be used as the supplementary materials for any publication(s) that uses the sedimentologic and geochemical data or taxa identification or radiocarbon dates and depths reported herein. Revision 2.0 by Katherine M. Scharer on February 6, 2024. To review the changes that were made see 'Versioning.txt' file in the Attached Files section on the data release landing page.
DOI: 10.18739/a2k931783
title: The Arctic Plant Aboveground Biomass Synthesis Dataset, Pan-Arctic, 1998-2022

description: Plant biomass is a fundamental ecosystem attribute that is sensitive to rapid climatic changes occurring in the Arctic. Nevertheless, measuring plant biomass in the Arctic is logistically challenging and resource intensive. Lack of accessible field data hinders efforts to understand the amount, composition, distribution, and changes in plant biomass in these northern ecosystems. Here, we present The Arctic Plant Aboveground Biomass Synthesis Dataset, which includes field measurements of lichen, bryophyte, herb, shrub, and/or tree aboveground biomass grams per meter squared (g/m^2) on 2327 sample plots in seven countries. We created the synthesis dataset by assembling and harmonizing 32 individual datasets. Aboveground biomass was primarily quantified by harvesting sample plots during mid- to late-summer, though tree and often tall shrub biomass were quantified using surveys and allometric models. Each biomass measurement is associated with metadata including sample date, location, method, data source, and other information. This unique dataset can be leveraged to monitor, map, and model plant biomass across the rapidly warming Arctic.
DOI: 10.5281/zenodo.10627489
title: Clinically-driven virtual patient cohort of 3000 thoracic aortas

description: Dataset of 3000 thoracic aortas generated ugins bootstrapping in the work "Clinically-Driven Virtual Patient Cohorts Generation: An Application to Aorta". Each case is in a separate folder with three stl files, one for the wall, one for the inlet (valve) and one for the outlet (descending aorta). No supraaortic branches are present.
DOI: 10.5281/zenodo.10627490
title: Clinically-driven virtual patient cohort of 3000 thoracic aortas

description: Dataset of 3000 thoracic aortas generated ugins bootstrapping in the work "Clinically-Driven Virtual Patient Cohorts Generation: An Application to Aorta". Each case is in a separate folder with three stl files, one for the wall, one for the inlet (valve) and one for the outlet (descending aorta). No supraaortic branches are present.
DOI: 10.5281/zenodo.10627573
title: Chlamydomonas reinhardtii mst3 strain swimming speed analysis

description: A set of images, captured with a 400 ms exposure time, of swimming C. reinhardtii cells. The dataset includes images for a wild-type strain (CC-5325) and four mst3 mutants (mst3-1, mst3-2, mst3-3, and mst3-4). Images were recorded using a Nikon Eclipse Ti microscope with a 10 X objective lens and a CoolSNAP EZ CCD camera.
DOI: 10.5281/zenodo.10627574
title: Chlamydomonas reinhardtii mst3 strain swimming speed analysis

description: A set of images, captured with a 400 ms exposure time, of swimming C. reinhardtii cells. The dataset includes images for a wild-type strain (CC-5325) and four mst3 mutants (mst3-1, mst3-2, mst3-3, and mst3-4). Images were recorded using a Nikon Eclipse Ti microscope with a 10 X objective lens and a CoolSNAP EZ CCD camera.
DOI: 10.6073/pasta/db012736494ca1627bed2e68205db957
title: Nitrogen fixation (acetylene reduction) and denitrification (acetylene block) data from streams across ecoclimatic domains in the United States, 2017-2019

description: We conducted a cross-ecoregion study to test the hypothesis that N-fixation and denitrification would co-occur in streams and rivers across a range of reactive N concentrations. Between 2017 and 2019, we sampled 30 streams in 13 ecoregions, using chambers to quantify N-fixation using acetylene reduction and denitrification using acetylene block. 25 of the study streams were part of the National Ecological Observatory Network or the StreamPULSE network, which provided data on water temperature, light, nutrients, discharge and metabolism. Although N-fixation and denitrification occur under contrasting environmental conditions, we found that they co-occurred in ca. 40% of stream ecosystems surveyed, and microbes capable of carrying out each process were found in all surveyed streams. This dataset includes the chamber data used to calculate nitrogen fixation and denitrification rates, stream substrate information used to scale rates from substrate to whole-reach scale, and a variety of reach-to-landscape scale covariates used to evaluate predictors of rates across the study streams.
DOI: 10.57830/2302398
title: Klamath Vegetation Monitoring Data Package

description: This dataset contains monitoring data for vegetation at Crater Lake NP, Lassen Volcanic NP, Lava Beds NM, Oregon Caves NMP, Redwood NSP, and Whiskeytown NRA. A core concept of the Klamath Inventory and Monitoring Networks vegetation monitoring protocol is that assessing the composition, structure, and function of vegetation communities, can be used to evaluate the ecological integrity of wider park habitats. Therefore, monitoring vegetation change is imperative to detecting and understanding the status and trends in park ecosystems. Objectives are to: sample vegetation and environmental parameters every 3 years using a 3 year revisit frequency; monitor status and trends in vegetation composition; monitor status and trends in vegetation structure and function.
DOI: 10.6084/m9.figshare.23950584.v3
title: BioNet_Data

description: Texture features and corresponding locations of all samples inside big ROI on cohort A and cohort B. Raw scores of three gene modules and corresponding locations of all biopsies on cohort A and cohort B.
DOI: 10.6084/m9.figshare.23950584.v2
title: BioNet_Data

description: Texture features and corresponding locations of all samples inside big ROI on cohort A and cohort B. Raw scores of three gene modules and corresponding locations of all biopsies on cohort A and cohort B.
DOI: 10.5281/zenodo.10622452
title: Arctic Sea Ice Topography Information from RADARSAT Constellation Mission (RCM) Synthetic Aperture Radar (SAR) Backscatter - Data and model
DOI: 10.5281/zenodo.10594757
title: The signature of a T-cell response to KSHV persists across space and time in individuals with epidemic and endemic KS from Uganda

description: Inadequate T-cell control of Kaposi sarcoma-associated herpesvirus (KSHV) infection predisposes to development of Kaposi sarcoma (KS), but little is known about the T-cell response to KSHV. Postulating that KS tumors contain abundant KSHV-specific T-cells, we performed transcriptional profiling and T-cell receptor (TCR) repertoire analysis of tumor biopsies from 144 Ugandan adults with KS. We show that CD8+ T-cells and M2-polarized macrophages dominate the tumor micro-environment (TME). The TCR repertoire of KS tumor infiltrating lymphocytes (TIL) is shared across non-contiguous tumors and persists across time. Clusters of T-cells with predicted shared specificity for uncharacterized antigens, potentially encoded by KSHV, comprise ~25% of KS TIL, and are shared across tumors from different time points and individuals. Single-cell RNA-sequencing of blood identifies a non-proliferating effector memory phenotype and captured the TCRs in 14,698 putative KSHV-specific T-cells. These results suggest that a polyspecific KSHV-specific T-cell response inhibited by M2 macrophages exists within the KS TME, and provide a foundation for studies to define its specificity at a large scale.
description: This repository contains the supporting files for the manuscript "The signature of a T-cell response to KSHV persists across space and time in individuals with epidemic and endemic KS from Uganda". This data contains a subset of files required to recreate the figures from the manuscript. The codebase for the manuscript is avaiable on GitHub (https://github.com/shashidhar22/ks_manuscript)
DOI: 10.5281/zenodo.10594758
title: The signature of a T-cell response to KSHV persists across space and time in individuals with epidemic and endemic KS from Uganda

description: Inadequate T-cell control of Kaposi sarcoma-associated herpesvirus (KSHV) infection predisposes to development of Kaposi sarcoma (KS), but little is known about the T-cell response to KSHV. Postulating that KS tumors contain abundant KSHV-specific T-cells, we performed transcriptional profiling and T-cell receptor (TCR) repertoire analysis of tumor biopsies from 144 Ugandan adults with KS. We show that CD8+ T-cells and M2-polarized macrophages dominate the tumor micro-environment (TME). The TCR repertoire of KS tumor infiltrating lymphocytes (TIL) is shared across non-contiguous tumors and persists across time. Clusters of T-cells with predicted shared specificity for uncharacterized antigens, potentially encoded by KSHV, comprise ~25% of KS TIL, and are shared across tumors from different time points and individuals. Single-cell RNA-sequencing of blood identifies a non-proliferating effector memory phenotype and captured the TCRs in 14,698 putative KSHV-specific T-cells. These results suggest that a polyspecific KSHV-specific T-cell response inhibited by M2 macrophages exists within the KS TME, and provide a foundation for studies to define its specificity at a large scale.
description: This repository contains the supporting files for the manuscript "The signature of a T-cell response to KSHV persists across space and time in individuals with epidemic and endemic KS from Uganda". This data contains a subset of files required to recreate the figures from the manuscript. The codebase for the manuscript is avaiable on GitHub (https://github.com/shashidhar22/ks_manuscript)
DOI: 10.15468/dl.xn5bts
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lerniana tritonum (Bourguignat, 1852))",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0091004-240626123714530/datasets/export for details.
DOI: 10.15468/dl.jbaux3
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Adoxophyes honmai Yasuda, 1998",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 17 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0091005-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/su99-3tjy
title: Measurement of Aerosol_absorption_angstrom_exponent, aerosol_absorption_coefficient and equivalent_black_carbon at Birkenes II

description: Measurement of Aerosol_absorption_angstrom_exponent, aerosol_absorption_coefficient and equivalent_black_carbon at Birkenes II