cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/115798
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1413 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7545896
title: Additional file 1 of Image-based classification of plant genus and family for trained and untrained plant species

description: This archive contains spreadsheets with the complete list of taxa, i.e., species, genera, families, along with details on training and test set configurations and results for every taxon and experiment. Furthermore, the Supporting Information include evaluations on the impact of image content on classification accuracy and the InS at species level vs. ExS accuracy as well as additional neural attention visualizations. (ZIP 9011 kb)
DOI: 10.7284/115800
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1413 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7545896.v1
title: Additional file 1 of Image-based classification of plant genus and family for trained and untrained plant species

description: This archive contains spreadsheets with the complete list of taxa, i.e., species, genera, families, along with details on training and test set configurations and results for every taxon and experiment. Furthermore, the Supporting Information include evaluations on the impact of image content on classification accuracy and the InS at species level vs. ExS accuracy as well as additional neural attention visualizations. (ZIP 9011 kb)
DOI: 10.7284/115801
title: Multiplexed data collected during research cruise HRS1414 using a UDel SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115802
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1414 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115803
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1414 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115804
title: Multiplexed data collected during research cruise HRS1415 using a UDel SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115805
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1415 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115806
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1415 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7545839
title: Additional file 7: of Recombination of ecologically and evolutionarily significant loci maintains genetic cohesion in the Pseudomonas syringae species complex

description: Annotations for all gene families present in at least five strains that were determined to be both virulence associated and positively selected. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.7545833
title: Additional file 1: of Altemeierâ s procedure for complete rectal prolapse; outcome and function in 43 consecutive female patients

description: Data on follow-up and recurrences. Pre and post-operative functional scores and data above recurrences and time to recurrences collected from each patient. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.7545839.v1
title: Additional file 7: of Recombination of ecologically and evolutionarily significant loci maintains genetic cohesion in the Pseudomonas syringae species complex

description: Annotations for all gene families present in at least five strains that were determined to be both virulence associated and positively selected. (XLSX 37 kb)
DOI: 10.7284/115807
title: Multiplexed data collected during research cruise HRS1416 using a UDel SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7545827
title: Additional file 5: of Recombination of ecologically and evolutionarily significant loci maintains genetic cohesion in the Pseudomonas syringae species complex

description: Additional annotations on publicly available genomes. This file contains a list of genes identified with the consensus DeNoGAP pipeline on publicly available genomes that were missing from the earlier annotations. (XLSX 7766 kb)
DOI: 10.6084/m9.figshare.7545830
title: Additional file 6: of Recombination of ecologically and evolutionarily significant loci maintains genetic cohesion in the Pseudomonas syringae species complex

description: Putative novel type III secreted effectors. This file contains the annotations for the 6264 P. syringae gene families that contained a characteristic N-terminal secretion signal and an upstream hrp-box promoter but were not classified as type III secreted effectors in our blast analysis of known effector families. (XLSX 2935 kb)
DOI: 10.6084/m9.figshare.7545833.v1
title: Additional file 1: of Altemeierâ s procedure for complete rectal prolapse; outcome and function in 43 consecutive female patients

description: Data on follow-up and recurrences. Pre and post-operative functional scores and data above recurrences and time to recurrences collected from each patient. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.7545827.v1
title: Additional file 5: of Recombination of ecologically and evolutionarily significant loci maintains genetic cohesion in the Pseudomonas syringae species complex

description: Additional annotations on publicly available genomes. This file contains a list of genes identified with the consensus DeNoGAP pipeline on publicly available genomes that were missing from the earlier annotations. (XLSX 7766 kb)
DOI: 10.6084/m9.figshare.7545824
title: Additional file 4: of Recombination of ecologically and evolutionarily significant loci maintains genetic cohesion in the Pseudomonas syringae species complex

description: Annotation software comparisons. This file compares the number of genes annotated by Prodigal, Glimmer, GeneMark, and FragScan for all 268 new genomes (256 P. syringae strains, 12 outgroup strains) that were sequenced and analyzed for this study. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.7545830.v1
title: Additional file 6: of Recombination of ecologically and evolutionarily significant loci maintains genetic cohesion in the Pseudomonas syringae species complex

description: Putative novel type III secreted effectors. This file contains the annotations for the 6264 P. syringae gene families that contained a characteristic N-terminal secretion signal and an upstream hrp-box promoter but were not classified as type III secreted effectors in our blast analysis of known effector families. (XLSX 2935 kb)
DOI: 10.6084/m9.figshare.7545818
title: Additional file 3: of Recombination of ecologically and evolutionarily significant loci maintains genetic cohesion in the Pseudomonas syringae species complex

description: Sequencing and assembly information for new genomes. This file contains all genome sequencing, quality filtering, and assembly information for each of the 268 new genomes (256 P. syringae strains, 12 outgroup strains) that were sequenced for this study. (XLSX 97 kb)
DOI: 10.6084/m9.figshare.7545824.v1
title: Additional file 4: of Recombination of ecologically and evolutionarily significant loci maintains genetic cohesion in the Pseudomonas syringae species complex

description: Annotation software comparisons. This file compares the number of genes annotated by Prodigal, Glimmer, GeneMark, and FragScan for all 268 new genomes (256 P. syringae strains, 12 outgroup strains) that were sequenced and analyzed for this study. (XLSX 51 kb)
DOI: 10.7284/115808
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1416 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7545818.v1
title: Additional file 3: of Recombination of ecologically and evolutionarily significant loci maintains genetic cohesion in the Pseudomonas syringae species complex

description: Sequencing and assembly information for new genomes. This file contains all genome sequencing, quality filtering, and assembly information for each of the 268 new genomes (256 P. syringae strains, 12 outgroup strains) that were sequenced for this study. (XLSX 97 kb)
DOI: 10.6084/m9.figshare.7545812
title: Additional file 2: of Recombination of ecologically and evolutionarily significant loci maintains genetic cohesion in the Pseudomonas syringae species complex

description: Metadata for all strains used in this study. This file contains complete metadata and assembly information for all 413 genomes (391 P. syringae, 22 outgroup) used in this study. (XLSX 81 kb)
DOI: 10.7284/115809
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1416 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7545812.v1
title: Additional file 2: of Recombination of ecologically and evolutionarily significant loci maintains genetic cohesion in the Pseudomonas syringae species complex

description: Metadata for all strains used in this study. This file contains complete metadata and assembly information for all 413 genomes (391 P. syringae, 22 outgroup) used in this study. (XLSX 81 kb)
DOI: 10.7284/115810
title: Multiplexed data collected during research cruise HRS1417 using a UDel SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115812
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1417 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115813
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1417 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7545776
title: Additional file 2: of NCLcomparator: systematically post-screening non-co-linear transcripts (circular, trans-spliced, or fusion RNAs) identified from various detectors

description: Table S2. The totally identified 17,313 intragenic and 766 intergenic NCL events by the 9 intragenic and 6 intergenic NCL detectors on the RNA-seq data of HeLa cells (XLSX 6083 kb)
DOI: 10.7284/115814
title: Multiplexed data collected during research cruise HRS1419 using a UDel SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7545776.v1
title: Additional file 2: of NCLcomparator: systematically post-screening non-co-linear transcripts (circular, trans-spliced, or fusion RNAs) identified from various detectors

description: Table S2. The totally identified 17,313 intragenic and 766 intergenic NCL events by the 9 intragenic and 6 intergenic NCL detectors on the RNA-seq data of HeLa cells (XLSX 6083 kb)
DOI: 10.7284/115815
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1419 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7545761
title: Additional file 1: of Host immunoglobulin G selectively identifies pathobionts in pediatric inflammatory bowel diseases

description: Table S1. Patient characteristics. Table S2. Detailed patient characteristics and diagnosis. Table S3. Detailed average quadrant 1 and quadrant 2 percentages and standard deviations of FACS sorting for pediatric IBD patient wash samples. Figure S1. Validation of flow cytometry and cell sorting for bacterial isolation. Figure S2. ICI scores of species identified in the shotgun metagenomics library in non-IBD and IBD. Figure S3. ICI scores of species identified in the shotgun metagenomics library of CD or UC. (ZIP 1310â kb)
DOI: 10.7284/115817
title: Multiplexed data collected during research cruise HRS1420 using a UDel SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7545761.v1
title: Additional file 1: of Host immunoglobulin G selectively identifies pathobionts in pediatric inflammatory bowel diseases

description: Table S1. Patient characteristics. Table S2. Detailed patient characteristics and diagnosis. Table S3. Detailed average quadrant 1 and quadrant 2 percentages and standard deviations of FACS sorting for pediatric IBD patient wash samples. Figure S1. Validation of flow cytometry and cell sorting for bacterial isolation. Figure S2. ICI scores of species identified in the shotgun metagenomics library in non-IBD and IBD. Figure S3. ICI scores of species identified in the shotgun metagenomics library of CD or UC. (ZIP 1310â kb)
DOI: 10.7284/115818
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1420 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7545746
title: Additional file 3: of Comparison of DNA methylation profiles associated with spontaneous preterm birth in placenta and cord blood

description: Table S1. Overlapped SNPs of the sPTB-associated DMPs covered by the 450â K BeadChip. Overlapped known SNPs of the sPTB-associated DMPs covered by the 450â K BeadChip, with minor allele frequencies among East Asian, European (Caucasian), and African populations. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7545746.v1
title: Additional file 3: of Comparison of DNA methylation profiles associated with spontaneous preterm birth in placenta and cord blood

description: Table S1. Overlapped SNPs of the sPTB-associated DMPs covered by the 450â K BeadChip. Overlapped known SNPs of the sPTB-associated DMPs covered by the 450â K BeadChip, with minor allele frequencies among East Asian, European (Caucasian), and African populations. (XLSX 11 kb)
DOI: 10.7284/115819
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1420 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7545740
title: Additional file 1: of Cytoplasmic glycoengineering of Apx toxin fragments in the development of Actinobacillus pleuropneumoniae glycoconjugate vaccines

description: Table S1. Full LC-MS/MS output. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7545740.v1
title: Additional file 1: of Cytoplasmic glycoengineering of Apx toxin fragments in the development of Actinobacillus pleuropneumoniae glycoconjugate vaccines

description: Table S1. Full LC-MS/MS output. (XLSX 15 kb)
DOI: 10.7284/115820
title: Multiplexed data collected during research cruise HRS1421 using a UDel SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115821
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1421 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7545719
title: Additional file 9: of Analysis of ambient temperature-responsive transcriptome in shoot apical meristem of heat-tolerant and heat-sensitive broccoli inbred lines during floral head formation

description: Table S7. Primers used in PCR and RT-PCR in this study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7545719.v1
title: Additional file 9: of Analysis of ambient temperature-responsive transcriptome in shoot apical meristem of heat-tolerant and heat-sensitive broccoli inbred lines during floral head formation

description: Table S7. Primers used in PCR and RT-PCR in this study. (XLSX 10 kb)
DOI: 10.7284/115822
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1421 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7545707
title: Additional file 7: of Analysis of ambient temperature-responsive transcriptome in shoot apical meristem of heat-tolerant and heat-sensitive broccoli inbred lines during floral head formation

description: Table S6. MapMan analysis results of the HT and HS enrichment gene sets. (XLSX 10 kb)
DOI: 10.7284/115823
title: Multiplexed data collected during research cruise HRS1422 using a UDel SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7545707.v1
title: Additional file 7: of Analysis of ambient temperature-responsive transcriptome in shoot apical meristem of heat-tolerant and heat-sensitive broccoli inbred lines during floral head formation

description: Table S6. MapMan analysis results of the HT and HS enrichment gene sets. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7545695
title: Additional file 5: of Analysis of ambient temperature-responsive transcriptome in shoot apical meristem of heat-tolerant and heat-sensitive broccoli inbred lines during floral head formation

description: Table S4. The HT and HS enriched gene sets. (XLSX 430 kb)
DOI: 10.6084/m9.figshare.7545701
title: Additional file 6: of Analysis of ambient temperature-responsive transcriptome in shoot apical meristem of heat-tolerant and heat-sensitive broccoli inbred lines during floral head formation

description: Table S5. GO functional categories (biological process) of probes in the HT and HS enrichment gene sets. (XLSX 59 kb)
DOI: 10.7284/115824
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1422 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7545701.v1
title: Additional file 6: of Analysis of ambient temperature-responsive transcriptome in shoot apical meristem of heat-tolerant and heat-sensitive broccoli inbred lines during floral head formation

description: Table S5. GO functional categories (biological process) of probes in the HT and HS enrichment gene sets. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.7545692
title: Additional file 2: of HIV treatment regimens and adherence to national guidelines in Australia: an analysis of dispensing data from the Australian pharmaceutical benefits scheme

description: Kirby MSD HIV Drug Interactions Analysis - PBS Code References. This spreadsheet contains the groupings of medications used to determine drug interaction classifications (XLSX 128 kb)
DOI: 10.6084/m9.figshare.7545695.v1
title: Additional file 5: of Analysis of ambient temperature-responsive transcriptome in shoot apical meristem of heat-tolerant and heat-sensitive broccoli inbred lines during floral head formation

description: Table S4. The HT and HS enriched gene sets. (XLSX 430 kb)
DOI: 10.6084/m9.figshare.7545686
title: Additional file 4: of Analysis of ambient temperature-responsive transcriptome in shoot apical meristem of heat-tolerant and heat-sensitive broccoli inbred lines during floral head formation

description: Table S3. Significantly regulated genes in the WGCNA modules. (XLSX 319 kb)
DOI: 10.6084/m9.figshare.7545692.v1
title: Additional file 2: of HIV treatment regimens and adherence to national guidelines in Australia: an analysis of dispensing data from the Australian pharmaceutical benefits scheme

description: Kirby MSD HIV Drug Interactions Analysis - PBS Code References. This spreadsheet contains the groupings of medications used to determine drug interaction classifications (XLSX 128 kb)
DOI: 10.7284/115825
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1422 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7545680
title: Additional file 1: of HIV treatment regimens and adherence to national guidelines in Australia: an analysis of dispensing data from the Australian pharmaceutical benefits scheme

description: Kirby MSD HIV Comorbidity Analysis - PBS Code References. This spreadsheet contains the groupings of medications used to determine comorbidity classifications (XLSX 162 kb)
DOI: 10.6084/m9.figshare.7545686.v1
title: Additional file 4: of Analysis of ambient temperature-responsive transcriptome in shoot apical meristem of heat-tolerant and heat-sensitive broccoli inbred lines during floral head formation

description: Table S3. Significantly regulated genes in the WGCNA modules. (XLSX 319 kb)
DOI: 10.6084/m9.figshare.7545677
title: Additional file 3: of Analysis of ambient temperature-responsive transcriptome in shoot apical meristem of heat-tolerant and heat-sensitive broccoli inbred lines during floral head formation

description: Table S2. The calculation of gene interactions by network component analysis. (XLSX 92 kb)
DOI: 10.6084/m9.figshare.7545680.v1
title: Additional file 1: of HIV treatment regimens and adherence to national guidelines in Australia: an analysis of dispensing data from the Australian pharmaceutical benefits scheme

description: Kirby MSD HIV Comorbidity Analysis - PBS Code References. This spreadsheet contains the groupings of medications used to determine comorbidity classifications (XLSX 162 kb)
DOI: 10.6084/m9.figshare.7545677.v1
title: Additional file 3: of Analysis of ambient temperature-responsive transcriptome in shoot apical meristem of heat-tolerant and heat-sensitive broccoli inbred lines during floral head formation

description: Table S2. The calculation of gene interactions by network component analysis. (XLSX 92 kb)
DOI: 10.7284/115826
title: Multiplexed data collected during research cruise HRS1423 using a UDel SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7545668
title: Additional file 2: of Analysis of ambient temperature-responsive transcriptome in shoot apical meristem of heat-tolerant and heat-sensitive broccoli inbred lines during floral head formation

description: Table S1. GO functional categories (biological process) of probes in the brown module. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7545668.v1
title: Additional file 2: of Analysis of ambient temperature-responsive transcriptome in shoot apical meristem of heat-tolerant and heat-sensitive broccoli inbred lines during floral head formation

description: Table S1. GO functional categories (biological process) of probes in the brown module. (XLSX 14 kb)
DOI: 10.7284/115827
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1423 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition