cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28899440.v1
title: The core dataset for the study ''<b>Tracing China’s methane emissions: 10,000 coal mines for ten years</b>''

description: Methane is the second most abundant anthropogenic greenhouse gas. China is the largest methane emitting country in the world, greater than the combination of Europe and America. While coal mining represents half of China’s methane emissions, the amount and the trend of emissions remain controversial since 2010. With China stopping updating emission data after 2014, this compromises the accuracy of the trajectory of global methane emissions. Here, we provide a comprehensive inventory of coal mine methane (CMM) emissions from 2011 to 2020, by independently quantifying the weighted emission factors of more than 10000 mines.We would like to clarify that all data sources for this study are publicly available. The core dataset used in this study comes from the <b><i>Compilation of National Coal Mine Gas Level Identification for 2011</i></b>, which is a publicly available book published by the Chinese National Coal Mine Safety Inspection Bureau. This compilation includes detailed data on gas levels in over 10000 coal mines across China, which serves as the basis for our analysis of methane emission factors. Additionally, the provincial coal production data was sourced from the <b><i>China Energy Statistical Yearbook</i></b>, a widely accessible government publication that compiles annual statistics on coal production at the provincial level.We have uploaded the complete dataset to Figshare, which can be accessed via the DOI link. This ensures that all interested researchers can access the full data used in our study for replication and further analysis. We believe that these measures have improved the transparency and repeatability of our work.
DOI: 10.17632/hh8h42yprg
title: Dataset Describing Problem Factors of Partnering Relationships in the Malaysian Construction Industry

description: The dataset consists the data describes problem factors which influence the development of partnering relationship between two key project parties comprise the main contractor and the subcontractor. The problem factors were were clustered into five categories. The dataset elicits the viewpoints of Malaysian managers and engineers with regards to the extent to which these factors have an impact on the partnering relationships in the construction industry.
DOI: 10.6084/m9.figshare.23902341.v1
title: Energy Security Dataset

description: A data set of socioeconomic factors that are associated with energy insecurity.
DOI: 10.6084/m9.figshare.28387961.v1
title: Supplementary Material for: Single-tube multiplex PCR-SSP for the detection of RHD variant alleles commonly found in serologically D– phenotype individuals in a Thai population

description: Background: The molecular basis of the RHD gene found in serologically D– phenotype individuals differs with race/ethnicity. Therefore, we aimed to develop a single-tube multiplex PCR-sequence specific primer (multiplex PCR-SSP) to detect RHD variant alleles commonly found in serologically D– phenotype individuals in a Thai population.
Study design and methods: In total, 205 blood samples with a serologically D– phenotype were tested using a single-tube multiplex PCR-SSP targeted RHD exons 1, 4, 7, 10, and c.1227G&gt;A in RHD exon 9 in combination with a hybrid Rhesus box, and results were confirmed by direct DNA sequencing.
Results: In a single-tube multiplex PCR-SSP, three patterns of amplified RHD exons were observed: total deletion of the RHD gene, Asian-type DEL, and RHD-CE-D hybrid. The allele frequencies of RHD*01N.01, RHD*01EL.01, and RHD-CE-D hybrid were 83.4%, 12.9%, and 2%, respectively. All of the Asian-type DEL samples present the RHCE*C/E allele (predicted RhCE phenotype: C/E+).
Conclusion: This study successfully established a simple and reliable molecular diagnostic platform for analyzing RHD variant alleles commonly found in serologically D– phenotype individuals in a Thai population. This technique could enable broader RHD*01EL.01 (Asian-type DEL) analyses in high-prevalence areas such as Thailand and other countries in East and Southeast Asia, serving as an example for blood bank routine settings.
DOI: 10.17632/st7md3ss85
title: FORTRESS: FORTRAN programs to solve coupled Gross-Pitaevskii equations for spin-orbit coupled spin-f Bose-Einstein condensate with spin f = 1 or 2

description: We provide here the updated versions of OpenMP parallelized FORTRAN 90/95 programs to numerically study the ground states and/or the dynamics of homogeneous or trapped spin-1 or spin-2 Bose-Einstein condensates (BECs) with anisotropic spin-orbit (SO) coupling. The coupled sets of three or five Gross-Pitaevskii (GP) equations, respectively, for a spin-1 or a spin-2 Bose-Einstein condensate (BEC) are solved using a time-splitting Fourier spectral method.
DOI: 10.6084/m9.figshare.11611071.v3
title: Similar Face Dataset (SFD)

description: Similar face recognition has always been one of the most challenging research directions in face recognition.This project shared similar face images (SFD.zip) that we have collected so far. All images are labeld and collected from publicly available datasets such as LFW, CASIA-WebFace.We will continue to collect larger-scale data and continue to update this project.Because the data set is too large, we uploaded a compressed zip file (SFD.zip). Meanwhile here we upload a few examples for everyone to view.<br><br><br>email: ileven@shu.edu.cn<br>
DOI: 10.6084/m9.figshare.14033822.v1
title: Supplementary data for Sun et al., "Divergence in ABA gene regulatory network underlies differential growth control"

description: <strong>Update (Feb. 2nd, 2022): </strong>Supplementary data S3 was revised in response to the second peer review, to include gene set enrichment analyses (GSEA) among ABA- and salt-responsive DEG sets. <strong>Update (Sep. 8th, 2021): </strong>Supplementary data S1, S4, and S8 were revised in response to peer reviewers' comment, as follows:<br> - data S1 was revised to include columns indicating orthologs included in AREB/ABF GRN. - data S4 was revised to include additional worksheets showing full results and selected examples for PiP analyses performed on genes included in AREB/ABF GRN and their ortholog pairs. - data S8 was revised to include genes in ABA-related pathways, in addition to previous lists of auxin- and ethylene-related pathways. Currently the zipped archive included both the original and revised data files for reviewing purpose. Upon publication of the manuscript, the archive will have only the final versions. <strong><br> data S1. All 1-to-1 Orthologous groups with functional genomics data from RNA-seq and DAP-seq.</strong> ABA-responsive gene expression and number of DAP-seq peaks in adjacent genomic regions for 15,198 all unambiguous 1-to-1 ortholog groups. <strong>data S2. An analysis with OrthNet (including duplicates) with functional genomics data from RNA-seq and DAP-seq.</strong> An expanded version of data S1 where all genes, including lineage(s)-specific duplicates and those not in 1-to-1 ortholog groups, organized into OrthNet units based on both sequence similarity and co-linearity. See legend inside the Dataset for details. <strong>data S3. GO enrichment among ABA-induced and repressed DEGs.</strong> A matrix of GO terms enriched in ABA-induced and repressed DEGs for all species, tissues, and time points. <strong>data S4. Phylogenetically informed profiling (PiP) analysis of ABA-responsive gene expression for the four crucifer species.</strong> Results of PiP analysis identifying GO terms showing lineage(s)-specific modifications of ABA-responses. See legend inside the Dataset for details. <strong>data S5. JASPAR motifs enriched among promoters of ABA-induced and repressed DEGs.</strong> A matrix of known transcription factor-binding motifs, obtained from the JASPAR database, enriched in the promoters of ABA-induced and repressed DEGs for all species, tissues, and time points. <strong>data S6. All DAP-Seq peak coordinates with annotations.</strong> All DAP-Seq peak coordinates with number of replicates, types of AREB/ABFs, and other information. <strong>data S7. Conserved ABA GRN.</strong> All genes curated to build the conserved ABA GRN shown in figure 4. <strong>data S8. ABA, Auxin and Ethylene GRN.</strong> All genes curated on the ABA, Auxin and ethylene pathway. 1:1 orthologs identified from RNA-seq and DAP-seq datasets were used to construct the actual GRN. <br>
DOI: 10.6084/m9.figshare.28091909.v1
title: raisd-ai_evaluation_dataset_mild_bottleneck_1K

description: Dataset with mild bottleneck used for the evaluation of RAiSD-AI software.The commands to generate MS files are:train/neutral.ms: ./msdir/ms 128 1000 -t 2000 -r 2000 2000 -eN .10000000000000000000 0.5 -eN .10100000000000000000 118085 44678 25766train/selsweep.ms:./msseldir/mssel 128 1000 0 128 ./trajectory_files/trajectory2.txt 1000 -t 2000 -r 2000 2000 -eN .10000000000000000000 0.5 -eN .10100000000000000000 118085 44678 25766<br>test/neutral.ms: ./msdir/ms 128 1000 -t 2000 -r 2000 2000 -eN .10000000000000000000 0.5 -eN .10100000000000000000 13380 19597 12002<br>test/selsweep.ms: ./msseldir/mssel 128 1000 0 128 ./trajectory_files/trajectory2.txt 1000 -t 2000 -r 2000 2000 -eN .10000000000000000000 0.5 -eN .10100000000000000000 13380 19597 12002<br>
DOI: 10.60893/figshare.jap.28869875.v1
title: Supplemental materials

description: The finial structure file for SCO and LSCO in VASP POSCAR format
DOI: 10.17632/26p3kym3cm
title: Questionnaire on the data set Covid-19 infection and the Contact lens wearers: Lockdown A' (23 March- 4 May 2020), Greece.

description: The questionnaire is provided as a supplementary file. Only the completed questionnaires were used in the analysis. Participation in the study was voluntary and anonymous. The structure of the questionnaire used for data collection includes 3 sections, Demographic questions, General / Basic questions related to contact lens use and Questions about the infection risk, views, rumours and the possible impact or not of the Covid-19 pandemic on the contact lens use, during the period of the first lockdown in Greece (23 March- 4 May 2020). Each section consists of closed-ended question types, multiple-choice, 5-point Likert scale, dichotomous questions and Question Skip Logic. In the survey, 1676 individuals participated in which 1037 individuals were contact lens users and completed the questionnaire. The 76.7% (795 ) were Female and 23.3% (242 ) were Male.
DOI: 10.6084/m9.figshare.22802981.v2
title: Experimental data for "Quantum simulation of Hawking radiation and curved spacetime with a superconducting on-chip black hole"

description: We simulate both flat and curved spacetimes in a 1D array of 10 superconducting qubits with tunable couplers. The experimental data of Figure 2 shows the quantum walks in flat and curved spacetimes with four different initial states. The quantum walks of quasi-particle in the curved spacetime reflect the gravitational effect near the black hole, resulting in the behaviour of Hawking radiation. By virtue of the state tomography measurement of all 7 qubits outside the analogue event horizon, we show that the stimulated Hawking radiation can be verified. The experimental data of Figure 3 includes the density matrix of the 7 qubits and the radiation probabilities. In addition, an entangled pair is prepared inside the horizon. The entanglement evolutions of flat and curved spacetime are compared in Figure 4. Our results would stimulate more interests to explore the related features of black holes using the programmable superconducting processor with tunable couplers.
DOI: 10.6084/m9.figshare.27200826.v5
title: Clean Industry? Tourism development and household energy poverty

description: The promotion of tourism development and the eradication of energy poverty are essential for realizing sustainable development goals. However, little attention has been given to whether tourism development and energy poverty are in conflict with each other and thus they hinder the realization of the SDGs. This study examines the impact of tourism development on household energy poverty using data from the 2014-2020 China Household Tracking Survey. The results show that tourism development can significantly reduce household energy poverty, and there is a causal relationship. Meanwhile, in rural areas and areas with relatively low energy production, the effect of tourism development in alleviating household energy poverty is greater. In addition, tourism development can increase household income, improve energy utilization and promote urban green innovation, and thus it canaffect household energy poverty in terms of both household energy purchasing power and accessibility. The results of the study expand new perspectives on poverty reduction through tourism and provide policy recommendations on how to promote tourism development for the eradication of energy poverty.
DOI: 10.6084/m9.figshare.28426328.v1
title: Rice_MT_HSI_hyperspectral images

description: Hyperspectral images of polished rice
DOI: 10.17632/c5drwfx9vn
title: Data for: Parameter estimation of photovoltaic modules using a heuristic iterative algorithm
DOI: 10.17632/dvvx6kst3f
title: Hazelnuts

description: Hazelnut Dataset
* Contains a total of 15770 hazelnut images in 3 different classes.
* From 1577 different hazelnut,  it was created by taking 10 pictures of each hazelnut from different angles.
* This classes quality hazelnut , damaged hazelnut  and hazelnut kernel
DOI: 10.17632/tbcwdf42v4
title: Impact evaluation dataset

description: Impact of Supported Collective Actions on the Economic Performance of Small Farmers: Evidence from Georgia
DOI: 10.6084/m9.figshare.24948789.v6
title: Taxonomy of Retraction Reasons - Mapping of Reasons

description: The objective of this work is to refine the classification of retractions into distinct categories and subcategories. This is the mindmap of the classifications. <br>Special thanks to Martin Paul Eve at Crossref, Alison Abritis at Retraction Watch, and Achal Agrawal at Indian Research Watch, who each offered insightful and detailed critiques that informed this taxonomy version.
DOI: 10.17632/m9mhc9k6dc
title: raw image data for "Resilient anatomy and local microplasticity of naïve and stress hematopoiesis "_Figure 1-5 part7

description: raw image data for "Resilient anatomy and local microplasticity of naïve and stress hematopoiesis "_6
DOI: 10.6084/m9.figshare.13219745.v1
title: Reaction d MEP

description: The minimum energy path (MEP) of reaction #d in the catalytic reaction network of SABRE. It was obtained from electronic structure calculations at PBE+TS level of density functional theory through the FHI-aims code package.<br>Data is in the xyz file format. Each image in the MEP is described as one frame of the xyz file.
DOI: 10.6084/m9.figshare.23769129.v1
title: Test Case Prioritization based on Neural Network Classification with Artifacts Traceability

description: The constructed datasets include 5 versions per dataset, 1 to 3 requirements changed per version, cumulating a total of 135 examples for trivial-graph, respectively 222 examples for springmvc-router.
DOI: 10.6084/m9.figshare.687155.v2
title: Lillis_Classroom_Surfaces

description: The sequence file contains MiSeq 16S sequences from surfaces in a university classroom. They are broken up into 4 groups of surfaces, and those groups are divulged within the metadata file. Coordinates in metadata file are grid coordinates from the classroom used for spatial analysis, (1 unit in metadata file = c. 50 cm). Classroom dimensions were 9.2m x 15.2m. All statistical analysis R code is available on GitHub: https://github.com/jfmeadow/Meadow_etal_Surfaces UPDATE: This study is in press at BMC Microbiome Journal: Meadow JF, Altrichter AE, Kembel SW, Moriyama M, O'Connor TK, Womack AM, Brown GZ, Green JL, Bohannan BJM. (2014) Bacterial Communities on Classroom Surfaces Vary with Human Contact. BMC Microbiome.
DOI: 10.17632/mrh46xn79n
title: Supplemental material: Cortisol and ACTH measurements at extubation from pituitary surgery predicts HPA axis function

description: Supplemental material: Cortisol and ACTH measurements at extubation from pituitary surgery predicts HPA axis function
DOI: 10.6084/m9.figshare.20123150.v1
title: Ancient Caribbean Fish Collagen Fingerprints and Sequence Files

description: ZooMS spectra for archaeological fish remains from various Caribbean sites and sequencing files for modern references.
DOI: 10.6084/m9.figshare.7725545.v1
title: Code to compare random task graph generation methods

description: Code corresponding to figures of the report entitled "A Comparison of Random Task Graph Generation Methods for Scheduling Problems".<br>
DOI: 10.6084/m9.figshare.12936857.v1
title: Positive deviance for promoting dual-method contraceptive use among women in Uganda: a cluster randomized controlled trial (Dataset_PhaseII)

description: The data set comprised of baseline and follow-up data of 960 women from 20 health facilities in Mbarara District, Uganda/.
DOI: 10.6084/m9.figshare.19354334.v1
title: Near-Surface Seismic Measurements in Gravel Pit, Over Highway Tunnel and Underground Tubes

description: This data repository contains measurement data in the SEG-2 data format from seismic refraction campaigns conducted in Bavaria, Germany. The measurements have been recorded at three different sites: a gravel pit with near-surface ground water layer, a surface above a highway tunnel and a surface above underground tubes. The data can be used for seismic imaging methods such as travel time tomography or full waveform inversion.<br>
DOI: 10.6084/m9.figshare.26171287.v1
title: AK traverse soil cores_physical properties

description: Please, refer to 'AK traverse soil cores_information' file.
DOI: 10.17632/fcgghmx8f4
title: Multicenter Prospective Blinded Melanoma Detection Study with a Handheld Elastic Scattering Spectroscopy Device

description: Supplemental Material for "Multicenter Prospective Blinded Melanoma Detection Study with a Handheld Elastic Scattering Spectroscopy Device"
DOI: 10.17632/nm2xxy794p
title: Approach to Mycosis Fungoides in children (ARMFUL study): consensus-based recommendations.

description: This project aims to derive consensus recommendations for pediatric Mycosis Fungoides (MF) management.
Experts from pediatric dermatology, general dermatology, dermato-pathology, and pediatric hematology-oncology (N=37) contributed to consensus recommendations. The process involved three eDelphi rounds, concluding with a final consensus meeting using a modified Nominal Group Technique for unresolved items.
The consensus expanded clinical severity measures beyond TNMB staging to include pruritus, functional or esthetic impairment, quality of life impact, psychological aspects, and parental anxiety. Ten consensus-based treatment recommendations for early and advanced stages were established.
This dataset includes the following tables:
Table 2. Domain items that reached consensus in diagnosis and evaluation of children with MF;
Table 3. Domain items that gained dissensus or inconclusive results (bold) for inclusion in diagnosis and evaluation of children with MF;
Table 4. Domain items that reached consensus on management and outcomes of children with MF.
Table 5. Domain items that gained dissensus or inconclusive results (bold) on management and outcomes of children with MF.
Table 6. Comparisons of referral choices, experience in management advanced pediatric MF and yes/no comfortable self-management (chi-square test).
DOI: 10.6084/m9.figshare.1297883.v1
title: embalming and reperfusion of the kidney

description: Vascular embalminng of pig kidneys with thiel solution and subsequent vascular reperfusion with PP or diluted PEG
DOI: 10.6084/m9.figshare.13140299.v1
title: JVASP-86379 to JVASP-88384

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.27019507.v1
title: Research data for Habitat Use and Spatial Distribution Patterns of Endangered Pheasants on the Southern Slopes of the Himalayas

description: Our study utilizes camera trap data combined with joint species distribution models (JSDMs) and MaxEnt modeling to assess the impact of human disturbance and climate change on endangered pheasant species.
DOI: 10.6084/m9.figshare.5319388.v2
title: CERES - Meyers, Bryan, et al. Nature Genetics. 2017.

description: Datasets used in CERES publication.Meyers, Bryan, et al. Computational correction of copy-number effect improves specificity of CRISPR-Cas9 essentiality screens in cancer cells. Nature Genetics. 2017.<br><br>External data:<br>CCLE_copynumber_2013-12-03.seg.txt<br>CCLE copy number data downloaded from https://data.broadinstitute.org/ccle_legacy_data/dna_copy_number/CCLE_copynumber_2013-12-03.seg.txt<br>CCLE_RNAseq_081117.rpkm.gctCCLE gene expression data downloaded from https://data.broadinstitute.org/ccle/CCLE_RNAseq_081117.rpkm.gct<br><br>ccle2maf_081117.txtCCLE mutation data downloaded from https://data.broadinstitute.org/ccle/ccle2maf_081117.txt<br><br>Achilles_v2.20.2_GeneSolutions.gct<br>RNAi DEMETER gene dependencies downloaded from https://portals.broadinstitute.org/achilles/datasets/12/download/Achilles_v2.20.2_GeneSolutions.gct<br>CCDS.current.txtCCDS gene annotations downloaded from ftp://ftp.ncbi.nlm.nih.gov/pub/CCDS/archive/15/CCDS.current.txt<br>c2.all.v6.0.symbols.gmt MSigDB genesets downloaded from http://software.broadinstitute.org/gsea/msigdb/download_file.jsp?filePath=/resources/msigdb/6.0/c2.all.v6.0.symbols.gmt<br><br>avana_rs2.txt and gecko_rs2.txtDoench-Root scores for sgRNAs provided by authors of Doench, et al. Nat. Biotechnol. 2016. <br> wang_pool_normalized.counts.txtDownloaded from supplement of Wang, et al. Cell. 2017. <br>
DOI: 10.17632/24njbrmyjj
title: Embodied perspective-taking enhances interpersonal synchronization. A body-swap study.

description: SUMMARY of the study:
"Humans exhibit a strong tendency to synchronize movements with each other, with visual
perspective potentially playing a role in this interpersonal coordination. By manipulating the
visual scenes in virtual reality (VR) for 20 pairs of participants (N = 40) engaged in a joint fingertapping
task, we examined the effects of different visual perspectives (1st and 2nd person)
on their coordination dynamics. We hypothesized that perceiving the partner's movements
from their 1st person perspective would enhance interpersonal synchronization, potentially
mediated by the embodiment of the partner's hand. While dyadic entrainment was prevalent
in all coupled conditions, we observed significant differences in attractor dynamics across
perspective levels. Specifically, participants in 1st person coupling could not maintain decoupled
trajectories as effectively as those in 2nd person coupling. Our findings suggest that
visual perspective influences coordination dynamics in dyadic interactions, engaging errorcorrection
mechanisms in individual brains as they integrate the partner's hand in their body
representation. Complementary analysis of questionnaires regarding the subjective
experience of embodiment further supports our interpretation. Our results have the potential
to inform the development of applications for motor training and rehabilitation, to enhance
interpersonal coordination between patients and therapists."

The 'Data' folder contains datasets at different stages of processing. In order:
- onsets relative to metronomes and finger-taps (.mat files)
- recurrence score timeseries (.mat files)
- table of dyadic (JRQA) and individual (sense of ownership and agency, empathy, synchronization consistency) measures, ready for statistical analyses.