cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.hmz7dg
title: Occurrence Download

description: A dataset containing 21912 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Herbarium specimens of Herbiers Universitaires de Clermont-Ferrand (CLF)"
 ]
}

 The dataset includes 21912 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001343-150512124619364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dx3vkt
title: Occurrence Download

description: A dataset listing the 14719 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Nepal",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset's 14719 records were derived from 164 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0328631-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3szrt6
title: Occurrence Download

description: A dataset containing 142 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heteractis aurora (Quoy & Gaimard, 1833)"
 ]
}

 The dataset includes 142 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001343-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vehb62
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is MEX.3_1",
 "Geometry POLYGON((-117.27794 29.73541,-114.1315 29.73541,-114.1315 32.62077,-117.27794 32.62077,-117.27794 29.73541))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Equisetum L."
 ]
}

 The dataset includes 75 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052072-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j86njt
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Benin",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cissus kouandeensis A.Chev."
 ]
}

 The dataset includes 21 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0329664-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wd79uz
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psychotria christii Urb."
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188587-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5jhmu7
title: Occurrence Download

description: A dataset containing 152928 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Haiti"
 ]
}

 The dataset includes 152928 records from 346 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001343-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7vk7rs
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is one of (France, Greece, Croatia, Serbia)",
 "TaxonKey is Merodon loewi Goot, 1964"
 ]
}

 The dataset includes 31 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006109-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6fhdvz
title: Occurrence Download

description: A dataset containing 1536 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Ornithology Collection Passeriformes - Royal Ontario Museum",
 "Country is Australia"
 ]
}

 The dataset includes 1536 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0330768-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nbucj8
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hydroides steinitzi Ben-Eliahu, 1972"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001343-160430102343922/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rysumu
title: Occurrence Download

description: A dataset containing 36333 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "GadmGid is one of (COL.15.31_2)"
 ]
}

 The dataset includes 36333 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008889-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.98hn2u
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is COL.25_1",
 "TaxonKey is Uroxys elongatus Harold, 1868",
 "Year 1000-2010"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0330772-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9uln7w
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gasterosteiformes",
 {
 "or" : [
 "Country is Panama",
 "Country is El Salvador",
 "Country is Honduras",
 "Country is Belize",
 "Country is Mexico",
 "Country is Nicaragua",
 "Country is Guatemala",
 "Country is Costa Rica"
 ]
 }
 ]
}

 The dataset includes 28 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001343-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tt4em5
title: Occurrence Download

description: A dataset containing 6104 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Haplotrema Ancey, 1881"
 ]
}

 The dataset includes 6104 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055518-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-237801
title: Annual Holy Convocation of the Church of God in Christ (90th: 1997), Women's day program

description: [description english/roman)] Women's day program, "Holiness: a proven foundation for a promising future", 90th Annual Holy Convocation of the Church of God in Christ, Memphis, Tennessee, 1997 November 7.
DOI: 10.15468/dl.dv8dzp
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-250.0",
 "Country is Philippines",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IsInCluster is false",
 "TaxonKey is Hemiptera"
 ]
}

 The dataset includes 80 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078083-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v745q7
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stachys tysonii Skan"
 ]
}

 The dataset includes 20 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140557-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eghde8
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "Country is Portugal",
 "OccurrenceStatus is Present",
 "TaxonKey is Allium vineale L.",
 "Year 2002-2022"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0417337-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-237955
title: Annual Holy Convocation of the Church of God in Christ (97th: 2004), Women's day program (incomplete copy 1)

description: [description english/roman)] Women's day program, "Holy women bonding in the spirit of peace", 97th Annual Holy Convocation of the Church of God in Christ, Memphis, Tennessee, 2004 November 12. Incomplete copy lacks cover.
DOI: 10.15468/dl.zc5t3b
title: Occurrence Download

description: A dataset containing 40130 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (BRA.13.520_2, BRA.13.363_2)",
 "TaxonKey is Chordata"
 ]
}

 The dataset includes 40130 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0201601-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ar7jcz
title: Occurrence Download

description: A dataset containing 160 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stachytarpheta canescens Kunth"
 ]
}

 The dataset includes 160 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140589-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-237411
title: Annual holy convocation, Northern California, COGIC (50th: 1996), program

description: [description english/roman)] Program for the 50th Annual holy convocation, Northern California, Church of God in Christ, Berkeley, California, 1996 June 3-10.
DOI: 10.15468/dl.hw53as
title: Occurrence Download

description: A dataset containing 1672 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Base de datos de los pastos marinos mexicanos."
 ]
}

 The dataset includes 1672 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0168345-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.38wr36
title: Occurrence Download

description: A dataset containing 1920 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trichaptum abietinum (Pers. ex J.F.Gmel.) Ryvarden",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is United States of America",
 "Country is United States",
 "Country is United States of America",
 "Country is Canada",
 "Continent is North America"
 ]
 }
 ]
}

 The dataset includes 1920 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132805-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-235738
title: Conference of the International Home and Foreign Mission Department of COGIC, program, 1973

description: [description english/roman)] Program for the Conference of the International Home and Foreign Mission Department of Church of God in Christ (COGIC), "The gift of the Holy Spirit: our children's heritage", Houston, Texas, 1973 August 20-25.
DOI: 10.15468/dl.24akd2
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Temorites spinifera (Scott A., 1909)"
 ]
}

 The dataset includes 14 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133464-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f9773c
title: Occurrence Download

description: A dataset containing 8461 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stachytarpheta cayennensis (Rich.) Vahl"
 ]
}

 The dataset includes 8461 records from 369 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140591-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10992416
title: Draft genome sequences of Arabidopsis thaliana-associated micro-organisms from Reijerscamp soil, the Netherlands

description: Methodological summary and relevant references

Compressed tar archive containing 447 draft bacterial genomes and their annotations used in several studies including Fourie et al. (2024; in review) and Selten et al. (2024; in prep). Genome sequences are obtained by Illumina-only sequencing of microbial cultures. Illumina reads were demultiplexed and cleaned with cutadapt (version 2.8) (Martin, 2011) and assembled into genomes using A5 (A5-miseq version 20160825) (Coil et al., 2014). Genome contamination and heterogeneity was checked with CheckM (version 1.1.3) (Parks et al., 2015) and any genomes with multiple single copy gene occurrences were subjected to MaxBin (version 2.2.7) (Wu et al., 2014) to separate the genomes from contaminated bacterial cultures. Any non-bacterial contigs in the genome assemblies were removed using MMSeqs2 (version 13.45111) (Steineigger & Schöding, 2017). Open reading frames were found and annotated by PROKKA (version 1.14.6) (Seemann, 2014) and EggNOG (version 2.1.4-2) (Cantalapiedra et al., 2021) respectively. Microbial cultures were derived from Arabidopsis thaliana roots grown in Reijerscamp soil, described in Stringlis et al., 2018 https://doi.org/10.1073/pnas.1722335115.

The uploaded files are



Genome assemblies

Prokka gene predictions in GFF3 format

Predicted transcripts from genes in (2)

Predicted proteins from genes in (2), and

EggNOG annotations for the proteins in (4)


Genomes and annotations pending upload om NCBI GenBank (April 2024)
DOI: 10.15468/dl.e3e7v5
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scotorythra paludicola (Butler, 1879)",
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada",
 "Continent is North America"
 ]
 }
 ]
}

 The dataset includes 31 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128302-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-27550
title: Correspondence book No. 1 of Pentecostal Missionary Union [PMU], 1914-1920

description: [description english/roman)] Pentecostal Missionary Union [PMU] Correspondence book No. 2 including 61 pages of subject index; 2011 pages of PMU outgoing correspondence;
DOI: 10.5281/zenodo.10992415
title: Draft genome sequences of Arabidopsis thaliana-associated micro-organisms from Reijerscamp soil, the Netherlands

description: Methodological summary and relevant references

Compressed tar archive containing 447 draft bacterial genomes and their annotations used in several studies including Fourie et al. (2024; in review) and Selten et al. (2024; in prep). Genome sequences are obtained by Illumina-only sequencing of microbial cultures. Illumina reads were demultiplexed and cleaned with cutadapt (version 2.8) (Martin, 2011) and assembled into genomes using A5 (A5-miseq version 20160825) (Coil et al., 2014). Genome contamination and heterogeneity was checked with CheckM (version 1.1.3) (Parks et al., 2015) and any genomes with multiple single copy gene occurrences were subjected to MaxBin (version 2.2.7) (Wu et al., 2014) to separate the genomes from contaminated bacterial cultures. Any non-bacterial contigs in the genome assemblies were removed using MMSeqs2 (version 13.45111) (Steineigger & Schöding, 2017). Open reading frames were found and annotated by PROKKA (version 1.14.6) (Seemann, 2014) and EggNOG (version 2.1.4-2) (Cantalapiedra et al., 2021) respectively. Microbial cultures were derived from Arabidopsis thaliana roots grown in Reijerscamp soil, described in Stringlis et al., 2018 https://doi.org/10.1073/pnas.1722335115.

The uploaded files are



Genome assemblies

Prokka gene predictions in GFF3 format

Predicted transcripts from genes in (2)

Predicted proteins from genes in (2), and

EggNOG annotations for the proteins in (4)


Genomes and annotations pending upload om NCBI GenBank (April 2024)
DOI: 10.15468/dl.pchwdz
title: Occurrence Download

description: A dataset containing 266 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Melitaea asteria Freyer, 1828)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 266 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0245436-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6hemyx
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stachytarpheta calderonii Moldenke"
 ]
}

 The dataset includes 164 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140588-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-27528
title: Correspondence book No. 1 of Pentecostal Missionary Union [PMU], 1914-1920

description: [description english/roman)] Pentecostal Missionary Union [PMU] Correspondence book No. 2 including 61 pages of subject index; 2011 pages of PMU outgoing correspondence;
DOI: 10.15468/dl.kjqguh
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "DatasetKey is Estudio sistemático y ecológico del género Tigridia (Iridaceae)"
 ]
}

 The dataset includes 12 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017940-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mvm9mq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Strobilanthes ramulosa J.R.I.Wood"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0147215-230530130749713/datasets/export for details.
DOI: 10.25549/pcra-c14-27536
title: Correspondence book No. 1 of Pentecostal Missionary Union [PMU], 1914-1920

description: [description english/roman)] Pentecostal Missionary Union [PMU] Correspondence book No. 2 including 61 pages of subject index; 2011 pages of PMU outgoing correspondence;
DOI: 10.15468/dl.xrm76z
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scotorythra caryopis Meyrick, 1899",
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada",
 "Continent is North America"
 ]
 }
 ]
}

 The dataset includes 26 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128297-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yua55u
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Morocco",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ictonyx libycus (Hemprich & Ehrenberg, 1833)"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086962-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-27455
title: Correspondence book No. 1 of Pentecostal Missionary Union [PMU], 1914-1920

description: [description english/roman)] Pentecostal Missionary Union [PMU] Correspondence book No. 2 including 61 pages of subject index; 2011 pages of PMU outgoing correspondence;