cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17458239
title: IODP Expedition 317 Interstitial water composite report

description: This composite report includes data from numerous interstitial water (IW) analyses (e.g., ICP-LIQUIDS and IONCHROM) in a variable set of columns. Each row combines the data from several tests (groups of measurements made on the same sample at the same time) for a particular IW sample. If data do not exist for a particular expedition, the column does not appear. To identify individual samples and tests, see each separate analysis (ALKALINITY, ICP-LIQUIDS, IONCHROM, SALINITY, SPEC, TITRATOR, and potentially others). Major and minor elements were determined by inductively coupled plasma-atomic emission spectrocsopy (ICP-LIQUIDS). Cations and anions were measured by ion chromatography (IONCHROM). Complex ions were measured by colorimetric measurements using a UV-VIS spectrometer (SPEC). Alkalinity and chloride was measured by titration (ALKALINITY and TITRATOR). Dissolved carbon (DC), dissolved inorganic carbon (DIC), and dissolved organic carbon (DOC) were measured by combustion in a total organic carbon (TOC) analyzer. Salinity was measured by refractometer (SALINITY). pH was measured by ion-selective electrode as part of the alkalinity procedure and is reported in the ALKALINITY analysis.
DOI: 10.5281/zenodo.17458207
title: IODP Expedition 317 Micropaleontology

description: Paleontological data were collected using microscopes and recorded in the JRSO description software. All data for a species group (e.g., diatoms or nannofossils) were collected in a Microsoft Excel worksheet by hole. A zip file of the entire expedition's observations is also available.
DOI: 10.5281/zenodo.17458208
title: IODP Expedition 317 Micropaleontology

description: Paleontological data were collected using microscopes and recorded in the JRSO description software. All data for a species group (e.g., diatoms or nannofossils) were collected in a Microsoft Excel worksheet by hole. A zip file of the entire expedition's observations is also available.
DOI: 10.15468/dl.m6rdrx
title: Occurrence Download

description: A dataset containing 62 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 countrycode countrycode,
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, countrycode, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, countrycode, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, countrycode, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, countrycode, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, countrycode, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, countrycode, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 (CAST(occurrence.taxonkey AS INTEGER) = 5220164 OR CAST(occurrence.acceptedtaxonkey AS INTEGER) = 5220164 OR CAST(occurrence.kingdomkey AS INTEGER) = 5220164 OR CAST(occurrence.phylumkey AS INTEGER) = 5220164 OR CAST(occurrence.classkey AS INTEGER) = 5220164 OR CAST(occurrence.orderkey AS INTEGER) = 5220164 OR CAST(occurrence.familykey AS INTEGER) = 5220164 OR CAST(occurrence.genuskey AS INTEGER) = 5220164 OR CAST(occurrence.specieskey AS INTEGER) = 5220164)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL AND occurrence.hascoordinate = TRUE)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year",
 occurrence.countrycode

 The dataset's 62 records were derived from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003230-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17458203
title: IODP Expedition 317 Discrete analyzer

description: Dissolved components such as silica, phosphate, ammonium, etc. measured in pore water or rhizon samples using a discrete analyzer spectrophotometer unit.
DOI: 10.5281/zenodo.17458204
title: IODP Expedition 317 Discrete analyzer

description: Dissolved components such as silica, phosphate, ammonium, etc. measured in pore water or rhizon samples using a discrete analyzer spectrophotometer unit.
DOI: 10.5281/zenodo.17458201
title: IODP Expedition 317 Inorganic carbon (coulometer)

description: Inorganic carbon (carbonate) is determined by coulometry, which uses a photodetection cell to measure carbon dioxide evolved during sample acidification. Report includes percent inorganic carbon and calcium carbonate.
DOI: 10.5281/zenodo.17458202
title: IODP Expedition 317 Inorganic carbon (coulometer)

description: Inorganic carbon (carbonate) is determined by coulometry, which uses a photodetection cell to measure carbon dioxide evolved during sample acidification. Report includes percent inorganic carbon and calcium carbonate.
DOI: 10.5281/zenodo.17458199
title: IODP Expedition 317 Core summary

description: Report includes detailed core data: drilling and coring depths, advancement, recovered core length measured on the catwalk and final curated length, core recovery, and sections cut.
DOI: 10.5281/zenodo.17458200
title: IODP Expedition 317 Core summary

description: Report includes detailed core data: drilling and coring depths, advancement, recovered core length measured on the catwalk and final curated length, core recovery, and sections cut.
DOI: 10.5281/zenodo.17458509
title: weecology/PortalData: 6.18.0

description: v6.18.0
DOI: 10.5281/zenodo.17457680
title: IODP Expedition 317 Core composite images

description: A digital composite image (PNG) is made for each core comprising core sections scanned using a line-scan camera. The composite layout is equivalent to traditional core table photos. Top left is top of core; color and meter rule references are included.
DOI: 10.5281/zenodo.17457679
title: IODP Expedition 317 Core composite images

description: A digital composite image (PNG) is made for each core comprising core sections scanned using a line-scan camera. The composite layout is equivalent to traditional core table photos. Top left is top of core; color and meter rule references are included.
DOI: 10.15468/dl.32tfxn
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Fossil",
 "Country is one of (United States of America, Canada, Mexico)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ursus americanus",
 "Year 1970-2025"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003244-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17281800
title: Provisional draft genome assembly for Hemileuca maia

description: Provisional draft genome assembly for Hemileuca maia (collected in Baton Rouge, Louisiana, USA) generated from PacBio HiFi reads and Hi-C chromosome conformation capture data. Assembly and methods followed Congrains, C., et al., 2024. Chromosome-scale genome of the polyphagous pest Anastrepha ludens (Diptera: Tephritidae) provides insights on sex chromosome evolution in Anastrepha. G3: Genes, Genomes, Genetics, 14(12), p.jkae239.
DOI: 10.15468/dl.r67r93
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ephydatia robusta"
 ]
}

 The dataset includes 15 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003245-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hj83bx
title: Occurrence Download

description: A dataset containing 65300 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation)",
 "Geometry POLYGON((-100.07892 18.2153,-97.81736 18.2153,-97.81736 20.27292,-100.07892 20.27292,-100.07892 18.2153))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Columbina inca",
 "Year 1960-2025"
 ]
}

 The dataset includes 65300 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003229-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17458258
title: Zinc hexacyanoferrate hydrosols characterization. Formation multi-metal cyanides
DOI: 10.5281/zenodo.17458259
title: Zinc hexacyanoferrate hydrosols characterization. Formation multi-metal cyanides
DOI: 10.5281/zenodo.17458384
title: Search Term Lexicon and Data Capture Template for Arizona–Sonora Mission Archives (Phase I, 1690–1821)

description: This dataset contains two open-access resources designed to support archival research on cross-border mission records from the colonial period (1690–1821). (1) Search_Terms_Archive_PhaseI.csv is a bilingual (English–Spanish) lexicon of historical and Islamicate keywords, including Arabic-script and Romanized variants, for locating records related to illegitimacy, concubinato, and crypto-religious identities in Arizona–Sonora archives. (2) Archive_Data_Capture_Template.csv provides a structured framework for documenting metadata from identified archival records, including collection, folio, record type, date, and individuals named. The dataset supports a broader documentation effort examining religious, cultural, and social intersection in the colonial frontier.
DOI: 10.5281/zenodo.17458385
title: Search Term Lexicon and Data Capture Template for Arizona–Sonora Mission Archives (Phase I, 1690–1821)

description: This dataset contains two open-access resources designed to support archival research on cross-border mission records from the colonial period (1690–1821). (1) Search_Terms_Archive_PhaseI.csv is a bilingual (English–Spanish) lexicon of historical and Islamicate keywords, including Arabic-script and Romanized variants, for locating records related to illegitimacy, concubinato, and crypto-religious identities in Arizona–Sonora archives. (2) Archive_Data_Capture_Template.csv provides a structured framework for documenting metadata from identified archival records, including collection, folio, record type, date, and individuals named. The dataset supports a broader documentation effort examining religious, cultural, and social intersection in the colonial frontier.
DOI: 10.15468/dl.72veff
title: Occurrence Download

description: A dataset containing 5801 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Otospermophilus variegatus"
 ]
}

 The dataset includes 5801 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003246-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21985/n2-efrx-ns45
title: S10: Guidepost position consistency
DOI: 10.15468/dl.d2a3w4
title: Occurrence Download

description: A dataset containing 12943132 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parus major",
 {
 "or" : [
 "Year 1910-1955",
 "Year 1980-2025"
 ]
 }
 ]
}

 The dataset includes 12943132 records from 6381 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003225-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/3j8-rs5-mrm
title: Trypanites isp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hmp-fjm-nac
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/slq-bvg-j8g
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/9qz-sva-9qp
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24994760.v1
title: Metabolic Rate and Egg Production in Japanese Quails Can Be Predicted by Assessing Growth Parameters of Laying Hens

description: The aim of the current study was to assess the female metabolic rate and test the hypothesis that there is a relationship between the egg productivity of Japanese quails from eight breeds and their morphometric, or growth, parameters. Parameters measured were body weight (B), volume (V), and surface area (S), as well as the metabolism level expressed by the ratio S/V. The collected egg performance traits were as follows: the number of eggs produced (N), the average egg weight (W), and the total egg mass (M) (i.e., N multiplied by W). To measure the S and V values, a novel technique was developed that takes into account the similarity of the quail’s body to an ellipsoid. An analysis of the relationships between productivity indicators allowed us to introduce a new index called the metabolic index, B·S/V, based on all three main growth parameters in quails. Using the values of this index, we were then able to judge indirectly the level of quails’ egg productivity. We went on to assess the N, W, and M values, not only depending on the size of the bird’s growth parameters but also according to the degree of their changes during quail growth. These changes were expressed as the slope angles of trend lines describing the growth process data. This approach produced more accurate results for predicting the egg productivity in terms of W and M.
DOI: 10.3535/54z-t2p-fgq
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pl7-vmh-g95
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/b2355vnrdw
title: RGC-patchseq

description: We characterized the transcriptome, electrophysiologies and morphologies of 472 high-quality RGCs using Patch-seq.
DOI: 10.3535/bqr-rn0-n63
title: Animalia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zy5-qaq-ckj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.15035988.v1
title: Patella_vulgata_transcriptome_annotation.xlsx

description: The common limpet, <i>Patella vulgata, </i>has been shown to produce the strongest known biological material. The teeth of the radula, a tongue-like organ used to scrape algae off rocky surfaces, have a tensile strength greater than spider silk and comparable to man-made carbon fibres. Here, we generate a complete transcriptome resource for the common limpet from three main tissues; the main muscle of the foot of the limpet, the radula Formation Zone, and the radula itself (subdivided into 4 segments supporting distinct stages of tooth development). We generated 871,497,501 paired-end reads and assembled into a transcriptome of 464,975 transcripts with an N50 score of 994 bp and an Ex90N50 score of 1,553 bp. Analysis of transcriptome completeness identified presence of 97.6 % of metazoan universal single copy orthologs. The filtered <i>Patella vulgata </i>transcriptome consists of 36,806 high-confidence transcripts representing 16,100 genes. This resource represents a profile of the transcriptome of the radula, and in particular the unique transcripts involved with the unique developmental stages of the limpet tooth formation.
DOI: 10.6084/m9.figshare.5373157.v1
title: Mirror Game - CC Measure

description: Code used in the Mirror Game project to automatically detect Co-Confidence (CC) motion. See details in (Noy, Binun &Golland, 2015).<br>The code is published here in order to describe the exact details of the alogrithm. Some of the functions might need other toolboxes to run. I tried to put all needed functions here, contact me if something is missing.<br>The two main function that compute the CC detection are:MG_Tools_CC_AZCMG_Tools_Segments_Acc_Zero_Cross<br>See inside the code for detailed information<br><br><br><br><br><br><br><br><br>Ref:<br>L. Noy, N. Levit-Binun, and Y. Golland, “Being in the zone: physiological markers of togetherness in joint improvisation”, <b>Frontiers in Human Neuroscience</b>, 9:187, <b>2015</b> <br>
DOI: 10.3535/739-nzg-1r0
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/f68-07n-k88
title: Animalia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tba-lpj-gfz
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z29-ca1-e9w
title: Anoigmaichnus bretti

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11861718.v1
title: Araucaria_RAD-seq_contigs.fasta

description: Araucaria_RAD-seq_contigs.fasta: fasta archive of contigs from RAD-seq are available at 10.6084/m9.figshare.11861718
DOI: 10.6084/m9.figshare.24847626.v1
title: Lilium tsingtauense Mitochondrial Genome Supplementary Datad Item

description: We assembled the multichromosomal structural mitochondrial genome of<i> </i><i>Lilium tsingtauense</i>, which exhibits significant differences from previous plant mitochondrial genomes possessing a single primary loop. Recently, many papers have reported the finding that repeated sequences mediate the generation of subgenomic and isomeric genomes.Regarding the conformation of mitochondrial genomes, we also tend to present them in as concise a manner as possible, such as use as much as possible a "master circle" to rule them all. In our case, however, such a treatment is not supported by long-reads.Our mapping results revealed unnatural extension of long-reads in the ‘master circular chromosome’, suggesting that at the very least most long-reads do not support such a fusion of these contigs.We provide a mapping result in BAM format named ‘mtDNA.sort.bam’, the contig1 with length of 290,067 in BAM file, is the result of combining sequences that can be looped separately. However, in multiple intervals, such as 93,029-93,175; 127,590-127,993; 146,055-146,458; 152,794-152,940; 179,857-180,113; 193,922-194,089; 224,791-224,985; 274,935-275,191; There are obvious unnatural extensions, which may represent those potentially repetitive sequences that do not support the fusion of these small loop, but are in a state of fission.Further, for the 13 such repetitive sequences present in our entire assembly, we counted the number of long-reads supporting fusion and fission to determine the specific conformation and their proportions. A final mapping of the 27 chromosomes based on short reads (ngs.sort.bam) and long reads (ont.sort.bam) is also provided, confirming that the current assembly is correct without gap.
DOI: 10.6084/m9.figshare.28702085
title: acr_this-study.fa.txt

description: acr prediction
DOI: 10.6084/m9.figshare.28702085.v1
title: acr_this-study.fa.txt

description: acr prediction
DOI: 10.3535/1bz-2dp-45f
title: Anoigmaichnus sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/a51-km4-cxg
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nmd-jgx-slj
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/frm-m2t-a51
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.5998577.v2
title: Outputs-analyses-Indicator_Results

description: Spatial indicator results
DOI: 10.25398/rd.northumbria.13143083.v1
title: OpenDoTT Current IoT Practices Dataset: ESR1 Wearables and the Self

description: This Directory contains data from the participatory study <b>The Lost Manual</b>—conducted from April to June 2020 as part of the PhD research on <b>Wearables and the Self</b> with the <b>Open Design of Trusted Things (OpenDoTT)</b> project.<br><br>The study aimed to capture current beliefs and perceptions of wearable IoT using cultural probes and letting the participants imagine the purpose of a found object.<br>For further information the researcher Jens Alexander Ewald can be contacted by email: jens.a.ewald@northumbria.ac.uk<br><b>The Lost Manual</b><br>The study involved cultural probes, using found objects by participants to meet the ethical requirement during the Covid-19 pandemic.<br>With each participant an initial interview and a reflection session was conducted. All participant communication was conducted as video interviews (sometimes audio only based on the internet connectivity).<br>The captured data in this data set contains:<br>- Guides: protocols for participant interviews and reflection sessions. - Participant Data containing screenshots during the video interview, chat histories between the researcher and participant, images of taken by the participants to document their activities, a printable file to re-create the Found Manuals on a standard A4 printer, transcriptions of the interview and reflection session- Sign up and Consent Form: PDF versions of online sign up and consent forms (incl. participant information sheet)- Sounds: The sound files the participants have been sent as creative triggers during the activity. Note that different sound files were used for Participant 01.- Website: An archived version of the webpage created for the recruitment under https://opendott.org/the-lost-manual<br><b>Notes</b><br>Participant 3 and 4 have dropped out of the study. Therefore these directories are missing reflection data as a reflection session has not taken place.<br>After the interview with participant 1 the interview guide was changed and from thereon included in the data set.<br><br>This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 813508.<br>
DOI: 10.3535/5c4-smb-l1t
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/j1a-rnc-jnj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.