cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/252c5e40a0606de015f04d42b826ea7b
title: Earthworms in tropical tree plantations and secondary forests

description: We compared patterns of earthworm abundance and species composition in tree plantations and secondary forests of Puerto Rico. Tree plantations included pine (Pinus caribaea Morelet) and mahogany (Swietenia macrophylla King) established in the 1930s, 1960s, and 1970s; secondary forests were naturally regenerated in areas adjacent to these plantations. We found that (1) earthworm density and fresh weight in the secondary forests were twice those in either of the tree plantations, and did not differ between the plantations, and (2) the exotic earthworm species, Pontoscolex corethrurus M ller, dominated both plantations and the secondary forests, but native earthworm species, Pontoscolex spiralis Borges & Moreno, Estherella montana Gates, and E. gatesi Borges & Moreno, occurred only in the secondary forests. Our results suggest that naturally-regenerated secondary forests are preferable to pine and mahogany plantations for maintaining a high level of earthworm density, fresh weight, and native species. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.
DOI: 10.6084/m9.figshare.23831670
title: 127 TRIPLE NEGATIVE BREAST CANCER SAMPLE FROM TCGA

description: We extracted 127 samples of TNBC subtype of breast cancer from Breast cancer (BRCA) with a total of 1217 samples for analysis.
DOI: 10.6084/m9.figshare.23831670.v1
title: 127 TRIPLE NEGATIVE BREAST CANCER SAMPLE FROM TCGA

description: We extracted 127 samples of TNBC subtype of breast cancer from Breast cancer (BRCA) with a total of 1217 samples for analysis.
DOI: 10.6084/m9.figshare.23831913
title: 447 TRIPLE NEGATIVE BREAST CANCER MERGED SAMPLES FROM METABRIC AND TCGA

description: We extracted 320 samples of the TNBC subtype of breast cancer from METABRIC (Breast Cancer) with a total of 2509 samples and merged 127 TNBC sample from TCGA-BRCA and used merged 447 samples for validation.
DOI: 10.6084/m9.figshare.23831913.v1
title: 447 TRIPLE NEGATIVE BREAST CANCER MERGED SAMPLES FROM METABRIC AND TCGA

description: We extracted 320 samples of the TNBC subtype of breast cancer from METABRIC (Breast Cancer) with a total of 2509 samples and merged 127 TNBC sample from TCGA-BRCA and used merged 447 samples for validation.
DOI: 10.6084/m9.figshare.24432907
title: TNBC EXPRESSION/COUNT DATA

description: We extract 127 TNBC sample from TCGA BRCA, AND TOTAL COUNT FOR TNBC IS 58387.
DOI: 10.6084/m9.figshare.24432907.v1
title: TNBC EXPRESSION/COUNT DATA

description: We extract 127 TNBC sample from TCGA BRCA, AND TOTAL COUNT FOR TNBC IS 58387.
DOI: 10.6084/m9.figshare.24432910
title: TNBC_DEG

description: We performed differential gene expression analysis on TNBC and found 17768 differential expressed genes.
DOI: 10.6084/m9.figshare.24432910.v1
title: TNBC_DEG

description: We performed differential gene expression analysis on TNBC and found 17768 differential expressed genes.
DOI: 10.6084/m9.figshare.24432913
title: TNBC_mRNAsi_DEG

description: After calculating mRNAsi of TNBC, We then divide the mRNAsi into two groups, high mRNAsi and low mRNAsi groups and then performed the differential genes expression analysis of two mRNAsi groups, we found 2459 differential genes.
DOI: 10.6084/m9.figshare.24432913.v1
title: TNBC_mRNAsi_DEG

description: After calculating mRNAsi of TNBC, We then divide the mRNAsi into two groups, high mRNAsi and low mRNAsi groups and then performed the differential genes expression analysis of two mRNAsi groups, we found 2459 differential genes.
DOI: 10.6084/m9.figshare.24432919
title: INTERSECTION_DEG_FOR_ANALYSIS

description: We intersect the TNBC DEG and mRNAsi DEG and extract list of 2228 DEG for further analysis.
DOI: 10.6084/m9.figshare.24432919.v1
title: INTERSECTION_DEG_FOR_ANALYSIS

description: We intersect the TNBC DEG and mRNAsi DEG and extract list of 2228 DEG for further analysis.
DOI: 10.6084/m9.figshare.24432925
title: Cluster.K=2.ConsensusMatrix

description: 127 patients with TNBC were classified into two stemness subgroups, utilized an unsupervised consensus clustering method to construct a novel classification of TNBC in the TCGA cohort to analyze the association between mRNAsi and TNBC subtypes.
DOI: 10.6084/m9.figshare.24432922
title: Cluster.k=2.ConsensusClass

description: 127 patients with TNBC were classified into two stemness subgroups .
DOI: 10.6084/m9.figshare.24432925.v1
title: Cluster.K=2.ConsensusMatrix

description: 127 patients with TNBC were classified into two stemness subgroups, utilized an unsupervised consensus clustering method to construct a novel classification of TNBC in the TCGA cohort to analyze the association between mRNAsi and TNBC subtypes.
DOI: 10.6084/m9.figshare.24432922.v1
title: Cluster.k=2.ConsensusClass

description: 127 patients with TNBC were classified into two stemness subgroups .
DOI: 10.6084/m9.figshare.24432931
title: Test_dataset

description: We split the TCGA and METABERIC MERGED dataset have 447 samples into test dataset have 149 samples for further analysis.
DOI: 10.6084/m9.figshare.24432940
title: Unicox

description: We identified 47 genes related to TNBC prognosis (p &lt; 0.05) using univariate Cox regression analysis.
DOI: 10.6084/m9.figshare.24432940.v1
title: Unicox

description: We identified 47 genes related to TNBC prognosis (p &lt; 0.05) using univariate Cox regression analysis.
DOI: 10.6084/m9.figshare.24432943
title: LASSO_GENES

description: We identified 47 genes related to TNBC prognosis (p &lt; 0.05) using univariate Cox regression analysis. We reduced this number to 16 genes using LASSO regression analysis.
DOI: 10.6084/m9.figshare.24432928
title: Train_dataset

description: We split he TCGA and METABRIC merged dataset have 447 samples into train dataset have 298 samples for analysis.
DOI: 10.6084/m9.figshare.24432943.v1
title: LASSO_GENES

description: We identified 47 genes related to TNBC prognosis (p &lt; 0.05) using univariate Cox regression analysis. We reduced this number to 16 genes using LASSO regression analysis.
DOI: 10.6084/m9.figshare.24582537
title: <b>Augmenting Insect Olfaction Performance through Nano-Neuromodulation</b>

description: Biological olfactory systems are highly sensitive and selective, often outperforming engineered chemical sensors in highly complex and dynamic environments. As a result, there is much interest in using biological systems to build sensors. However, approaches to read-out information from biological systems, especially neural signals, tends to be sub-optimal due to the number of electrodes that can be used and where they can be placed. Here, we aim to overcome this sub-optimality in neural information read out, using a nano-enabled neuromodulation strategy to augment insect olfaction-based chemical sensors. By harnessing the photothermal properties of nanostructures and releasing a select neuromodulator on-demand, we show that the odour-evoked response from the interrogated regions of the insect olfactory system can not only be enhanced but can also improve odour identification.
DOI: 10.6073/pasta/39d6596f2fc2655fc86f97173aac545b
title: Abundance of the planthopper Prokelisia at GCE LTER sampling sites in October, 2003-2019

description: The abundance of the planthopper Prokelisia spp was estimated each year during the fall monitoring at each zone of each GCE site that was dominated by Spartina alterniflora. N Observations were made in the vicinity of the permanent vegetation plots and Prokelisia abundance was scored on a 5 point scale.
DOI: 10.6073/pasta/be68fd5df9e57c9d8088836b9b6133c5
title: Long-term monitoring of seven high marsh plant mixtures on Sapelo Island GA

description: We set up plots (1x2m) in 1996 in mixtures or on vegetation borders at three sites. We set up 16 plots for each of seven mixtures - Marsh Landing (Juncus-Meadow, Spartina-Meadow, and Spartina-Batis mixtures), Teal Boardwalk (Juncus-Spartina mixture) and Shell Hammock (Juncus-Spartina, Juncus-Meadow, and Spartina-Meadow mixtures). Half were watered with fresh water 3 times per week (W) and half were controls (C). Watering stopped in April 2000. Plots were monitored to document changes in plant community composition (percent cover) over time.
DOI: 10.6073/pasta/92dd8f37741eee0aa89452ca6f94f194
title: Nutrient Network (NutNet) basic sampling at the Georgia Coastal Ecosystems LTER in summer 2019.

description: NutNet is a distributed ecological experiment with a sampling component and an experiment. The goal of this work was to conduct the NutNet sampling protocol at the GCE site. Comparisons can be made 1) within the GCE site, and 2) between GCE and other NutNet sites, most of which are terrestrial. More about Nutnet here: http://www.nutnet.umn.edu/.
DOI: 10.5066/p9wqtbp0
title: Daily Climate and Soil Moisture Data for the Southern Colorado Plateau Network Parks, 1980 &ndash; 2018 (ver. 1.1, November, 2023)

description: These data are daily climate, water balance, and soil moisture data for 270 plots in the National Park Service (NPS) Southern Colorado Plateau Network (SCPN) Inventory &amp;amp;amp;amp;amp; Monitoring (I&amp;amp;amp;amp;amp;M) network. Climate data was collected from a gridded, daily climate dataset, Daymet (https://daymet.ornl.gov/). Climate, alongside field-collected soils (SoilDepthsByPlot.csv) and vegetation information, were then used to drive a point based, daily, multi soil-layer, ecosystem water-balance model, SOILWAT2 (https://github.com/DrylandEcology/SOILWAT2). SCPN plots were established to capture the range of ecosystem conditions present in this network. Plant communities of the SCPN are a vital sign for this region, enhancing habitat, stabilizing soils, and moderating hydrology. However, these ecosystems are water-limited, and many plant and ecosystem processes are driven by the amount of water available in the soil profile (i.e. soil moisture). These data provide daily observations of gridded climate and predicted measures of water-balance (ie. transpiration, evaporation, etc.) and soil moisture availability for the last 38 years for 270 NPS plots and can be used to provide insight into plant and ecosystem processes.
DOI: 10.5281/zenodo.10149924
title: Reception of a physical activity intervention program in German older adults. Data from a feedback analysis of PROMOTE II.

description: As part of the AEQUIPA prevention research network, the aim of the PROMOTE II study was to gain insights into primary prevention for healthy aging. One focus was on the development and dissemination of ready-to-use tools and work aids to promote physical activity.
As part of a nine-month randomized trial with a cross-over design among adults aged 60 and above, eligible participants from 14 districts in Bremen in proximity to the two study centers (one in the North and one in the East of the city of Bremen, Germany) were randomly assigned to either a) a print-based intervention (PRINT) or b) a web-based intervention (WEB). Randomly selected thirty percent of the web-based intervention group received an activity tracker in addition (WEB+).
Usage of program components, attendance of group sessions and acceptance of the intervention were assessed via self-administered paper-based questionnaires three and nine months after baseline as well as feedback interviews and class recordings. Participant feedback was analyzed using quantitative methods on a descriptive basis, as well as using qualitative content analysis of open-ended questions, group-interviews and protocols based on the socio-ecological model as coding framework.
This publication provides the coding matrix, including the participant feedback data.
DOI: 10.5281/zenodo.10149925
title: Reception of a physical activity intervention program in German older adults. Data from a feedback analysis of PROMOTE II.

description: As part of the AEQUIPA prevention research network, the aim of the PROMOTE II study was to gain insights into primary prevention for healthy aging. One focus was on the development and dissemination of ready-to-use tools and work aids to promote physical activity.
As part of a nine-month randomized trial with a cross-over design among adults aged 60 and above, eligible participants from 14 districts in Bremen in proximity to the two study centers (one in the North and one in the East of the city of Bremen, Germany) were randomly assigned to either a) a print-based intervention (PRINT) or b) a web-based intervention (WEB). Randomly selected thirty percent of the web-based intervention group received an activity tracker in addition (WEB+).
Usage of program components, attendance of group sessions and acceptance of the intervention were assessed via self-administered paper-based questionnaires three and nine months after baseline as well as feedback interviews and class recordings. Participant feedback was analyzed using quantitative methods on a descriptive basis, as well as using qualitative content analysis of open-ended questions, group-interviews and protocols based on the socio-ecological model as coding framework.
This publication provides the coding matrix, including the participant feedback data.
DOI: 10.5281/zenodo.7892183
title: Dysregulation of early gene response to a mixed meal in skeletal muscle in obesity and type 2 diabetes

description: Supplemental Tables for a study Dysregulation of early gene response to a mixed meal in skeletal muscle in obesity and type 2 diabetes https://journals.physiology.org/doi/abs/10.1152/physiolgenomics.00046.2023
DOI: 10.5281/zenodo.7892184
title: Dysregulation of early gene response to a mixed meal in skeletal muscle in obesity and type 2 diabetes

description: Supplemental Tables for a study <strong>Dysregulation of early gene response to a mixed meal in skeletal muscle in obesity and type 2 diabetes</strong>
DOI: 10.5281/zenodo.8123431
title: Dysregulation of early gene response to a mixed meal in skeletal muscle in obesity and type 2 diabetes

description: Supplemental Tables for a study Dysregulation of early gene response to a mixed meal in skeletal muscle in obesity and type 2 diabetes https://journals.physiology.org/doi/abs/10.1152/physiolgenomics.00046.2023
DOI: 10.25345/c5kw57v55
title: MassIVE MSV000093417 - Cytoplasmic proteomic analysis of glioblastoma cells using a label free quantitative method
title: This project data contains mass spectrometry data of three replicates of control (CTRL) and temozolomide resistant (TMZR or also named in treated in raw files) cells. And the results were considered for label free quantitation and further statistical analysis as well as functional biology.
DOI: 10.6084/m9.figshare.24582690
title: 3T3 specific predictions

description: Predicted R-loops specifically detected in 3T3 and E14 were generated by selecting genome bins that were assigned probabilities ≥ 0.9 when applied one cell line model and ≤ 0.1 when applied the other.
DOI: 10.6084/m9.figshare.24582690.v1
title: 3T3 specific predictions

description: Predicted R-loops specifically detected in 3T3 and E14 were generated by selecting genome bins that were assigned probabilities ≥ 0.9 when applied one cell line model and ≤ 0.1 when applied the other.
DOI: 10.6084/m9.figshare.24582687
title: E14 specific predictions

description: Predicted R-loops specifically detected in 3T3 and E14 were generated by selecting genome bins that were assigned probabilities ≥ 0.9 when applied one cell line model and ≤ 0.1 when applied the other.
DOI: 10.6084/m9.figshare.24582687.v1
title: E14 specific predictions

description: Predicted R-loops specifically detected in 3T3 and E14 were generated by selecting genome bins that were assigned probabilities ≥ 0.9 when applied one cell line model and ≤ 0.1 when applied the other.
DOI: 10.21223/bjecyk
title: Dataset for: Late blight resistant potato varieties for the tropical highlands and mid-elevation

description: With the objective of selecting potato clones with high resistance to late blight and good quality for frying in French fires, 6 experiments were planted with 8 advanced clones from population B groups B3C1 and B3C2, in contrasting localities in Peru. The clones CIP395123.6, CIP396026.1 and CIP396034.103, were selected for their high tuber yield, good quality for french fries, high content of dry matter, low content of reducing sugars and adapts to the various localities of Peru, these clones will be releasse as new varieties in 2022 in Peru.
DOI: 10.21223/qeqsq6
title: Dataset for: New Heterotic Potato Clones Combining Two Divergent Germplasm Sources to Face Climate Change

description: The effect of heterosis when two genetically divergent populations are crossed, allows us to obtain potato clones that are superior to their parents. The objective of this study was to quantify the effect of heterosis in progeny for tuber yield and to select clones with high levels of resistance to late blight and high tuber yield. In 2014, to determine the effect of heterosis on progenies, the mating design line by tester was used, crossing clones from two divergent populations, forty-five progenies were evaluated in San Ramon, Peru, a warm environment under a randomized complete block design with 3 replications. The heterosis effect was determined with respect to mid parent value. Progenies CIP312909, CIP312923, CIP312918, CIP312924, CIP312926, and CIP312930, showed significant heterosis effect for marketable yield per plant and hectare. The progenies CIP312917, CIP312920, CIP312927, presented significant heterosis effect for average tuber weight in addition to marketable yield with increments above 40%. At harvest, 528 clones were selected, which were evaluated from 2015 to 2018 in contrasting environments in Peru: Huancayo in Highlands, San Ramon in warm conditions and mid elevation for tuberculous yield and Oxapampa for late blight resistance. Twenty eight clones were selected with yields from 16.25 to 334.42 tha-1under warm conditions and in highlands from 21.90 to 33.10 tha-1, resistance to late blight with Area Under Disease Progress Curve values from 112 to 1210 less than susceptible variety Yungay, with 1382.66. These clones can be used to release new varieties or as parents in breeding programs in African, Asian and Latin American.
DOI: 10.21223/mxkuik
title: Dataset for: New Resistant Potato Varieties to Late Blight and High Quality for French Fries generated in Peru

description: The potato (Solanum tuberosum L.) generates income for farmers in the Peruvian Andes, especially those dedicated to family farming. In Peru, the demand for fried potato sticks in restaurants, chicken shops, and fast food businesses is increasing every day, however, the supply is covered by imported pre-fried potatoes. The objective of the study was to select clones from the International Potato Center (CIP) breeding program resistant to late blight, with good yield and excellent quality for frying sticks. The project was financed by the Compañía Minera Poderosa and sponsored by the National Council for Science and Technology (CONCYTEC) under Law 30309 for the promotion of Scientific Research, Technological Development and Technological Innovation, through tax benefits. During the 2019-2020 and 2020-2021 agricultural campaigns, ten potato clones from the B3C1 and B3C2 populations and two Peruvian varieties (UNICA and Canchan), currently used for frying, were evaluated as controls. implementing 13 experiments in farmers' fields located in the north, center and south of Peru using the randomized complete block design with three replications of 150 plants, evaluating the severity of late blight expressed as a percentage of diseased leaf area, at harvest The yield was evaluated and through laboratory tests the content of dry matter, reducing sugars and the content of acrylamides were determined. The clones CIP395123.6, CIP396026.101 and CIP396034.103, were superior to the Canchan and UNICA controls, being selected for their high level of resistance to late blight, yields over 30 t/ha, dry matter with values ​​greater than 20%. of and percentage of reducing sugars less than 0.20, excellent quality for frying in sticks and acrylamide content below the maximum allowed by the European Union. The selected clones are in the process of being officially registered to be released as healthy varieties due to the lower use of fungicides, low content of acrylamides, lower oil consumption, preservation of the environment, resilient to climate change, sustainable for the family farming system in Peru, allowing to improve the standard of living of potato producers.
DOI: 10.5517/ccdc.csd.cc2fn3hq
title: CCDC 2253653: Experimental Crystal Structure Determination

description: Related Article: Mahabarathi Subramaniyan, Madhvesh Pathak|2023|Polyhedron|246|116696|doi:10.1016/j.poly.2023.116696
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fs8gz
title: CCDC 2257651: Experimental Crystal Structure Determination

description: Related Article: Priyanka R. Angarkhe, Aijaz Shaikh, Smruti Rekha Rout, Bipul Sarma, Jagnyaseni Tripathy, Rambabu Dandela, Swagat K. Mohapatra|2024|J.Mol.Struct.|1296|136920|doi:10.1016/j.molstruc.2023.136920
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fs8j1
title: CCDC 2257653: Experimental Crystal Structure Determination

description: Related Article: Priyanka R. Angarkhe, Aijaz Shaikh, Smruti Rekha Rout, Bipul Sarma, Jagnyaseni Tripathy, Rambabu Dandela, Swagat K. Mohapatra|2024|J.Mol.Struct.|1296|136920|doi:10.1016/j.molstruc.2023.136920
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fs8k2
title: CCDC 2257654: Experimental Crystal Structure Determination

description: Related Article: Priyanka R. Angarkhe, Aijaz Shaikh, Smruti Rekha Rout, Bipul Sarma, Jagnyaseni Tripathy, Rambabu Dandela, Swagat K. Mohapatra|2024|J.Mol.Struct.|1296|136920|doi:10.1016/j.molstruc.2023.136920
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.