cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26927851.v1
title: Exploring User Perceptions of Generative AI in Data Storytelling

description: Data storytelling combines narrative techniques that engage the audience with data visualization that provides meaningful insights, aiming to provide insights in an actionable way. Like various disciplines in the last few years, Generative AI use cases are being explored within data storytelling to some extent with limited success. This study investigates whether LLMs can be used by people in this creative of crafting data-driven stories that aim to assist in decision-making. To evaluate this, we developed a three-stage survey that captures participants' initial opinions on using Generative AI tools, then subject them to an intervention where they create a data story using ChatGPT and finally conclude with a post-survey that accumulates their thoughts on Generative AI and storytelling after the intervention. Our research examines how prior experience with data visualization and Generative AI shapes people's attitudes toward using these tools and whether hands-on experience affects their perceptions.The findings suggest that individuals with previous experience in Generative AI are inclined to adopt these tools for data storytelling. However, those who have used LLMs specifically for visualizations might not adopt them as readily. We also discovered that users find responses from tools like ChatGPT most helpful in the initial stages of data storytelling. Further, if they perceive the results as demonstrating expertise, they are more likely to embrace these Generative AI.
DOI: 10.17632/mt7pw78zb3
title: Data for: The Rise and Fall of American Lithium

description: Material flow analysis for lithium in the United States from 1910 to 2016. The dataset contains information on extraction and trade of: lithium minerals and brines, lithium chemicals (intermediate products), lithium products (end use sector), accumulated in-use lithium, and lithium waste.
DOI: 10.6084/m9.figshare.16822234.v2
title: Simulation data for "Observation and fully-thermal simulation of quasi-electrostatic magnetosonic waves"

description: Calculated dispersion relation data for "Observation and fully-thermal simulation of quasi-electrostatic magnetosonic waves"
DOI: 10.6084/m9.figshare.23790291.v1
title: SmartBT Dataset

description: This is a public dataset containing 54,739 smart contract source code and conract creation code(bytecode).
DOI: 10.6084/m9.figshare.29146061.v1
title: Gold Open Access 2025

description: Gold Open Access 2025 covers serious OA publishing (articles in DOAJ-listed journals) for 2020-2024, including more than 20,000 journals that published more than 1.4 million articles in 2024.
DOI: 10.6084/m9.figshare.5841105.v1
title: Supplementary Material for: Micro Integral Membrane Protein (MIMP), a Newly Discovered Anti-Inflammatory Protein of Lactobacillus Plantarum, Enhances the Gut Barrier and Modulates Microbiota and Inflammatory Cytokines

description: <b><i>Background/Aims:</i></b> Recent studies have demonstrated that the manipulation of the gut microbiome represents a promising treatment for inflammatory bowel disease (IBD). We previously identified micro integral membrane protein (MIMP) as the smallest domain of surface layer protein from Lactobacillus Plantarum. However, the therapeutic relevance of MIMP in IBD remains unknown. <b><i>Methods:</i></b> We initially employed a dextran sodium sulphate (DSS)-induced colitis model and evaluated the effect of MIMP on the inflammation response, intestinal barrier and gut microbiota using histological examination, Fluorescein isothiocyanate-Dextran detection and pyrosequencing analysis respectively. We then established peripheral blood mononuclear cells (PBMCs) and an epithelial CaCO-2 co-culture model to investigate the regulatory role of MIMP in inflammatory cytokines. The level changes of inflammatory cytokines were detected using Enzyme-linked immunosorbent and real-time polymerase chain reaction assay. The involved regulatory mechanisms were investigated mainly using dual luciferase reporter and chromatin immunoprecipitation assay. <b><i>Results:</i></b> In the DSS-induced colitis model, we observed that MIMP intervention effectively improved the body weight loss, increased the colon length and decreased disease activity index. Consistently, the inflammation scores in the MIMP treatment group were significantly lower than those in the DSS treatment group. Furthermore, MIMP intervention was found to successfully neutralize DSS treatment by decreasing the expression of pro-inflammatory cytokines (IFN-γ, IL-17 and IL-23) and increasing the expression of anti-inflammatory cytokines (IL-4 and IL-10). Notably, the permeability assay demonstrated that the MIMP treatment group was remarkably lower than that in the DSS treatment group. We also showed that MIMP improved gut microbiota dysbiosis caused by DSS-induced inflammation. Additionally, in PBMCs and the CaCO-2 co-culture model, MIMP showed an obvious suppressive effect on lipopolysaccharide-induced inflammation in a time- and dose-dependent manner. Furthermore, we revealed that MIMP could modulate inflammatory cytokine expression through the toll-like receptor 4 pathway and histone acetylation. <b><i>Conclusions:</i></b> Our results suggested that MIMP showed a significant anti-inflammatory effect through regulating the gut barrier, microbiota and inflammatory cytokines. MIMP may have translational relevance as clinically relevant therapy for IBD patients.
DOI: 10.17632/wk5z9xz348
title: Strike-slip fault damage zone samples: Jorgillo Fault filtered μ-CT and segmented volumes

description: This data repository contains the filtered and segmented μ-CT volumes used in the work done by: Gomila et al. (2021). Quantitative anisotropies of palaeopermeability in a strike-slip fault damage zone: Insights from micro-CT analysis and numerical simulations. Tectonophysics. https://doi.org/10.1016/j.tecto.2021.228873.
DOI: 10.6084/m9.figshare.12612458.v6
title: Global 1-km present and future hourly anthropogenic heat flux

description: AH4GUC is a database which contains maps of hourly-representative anthropogenic heat emissions (AHE) representing the periods 2010s and 2050s. The AHE of 2050s represents a single future scenario based on RCP8.5 and SSP3 climate change pathways. This future “business-as-usual” scenario assumes minimal or no adaptation and mitigation measures implemented in all countries. Monthly-averaged and annual-averaged values representing the 2010s and 2050s are also provided. All files are available in single-band raster format (GeoTIFF format) are freely accessible through this Figshare repository and at a university-maintained server that contains the hourly data (access: Tokyo Institute of Technology, http://urbanclimate.tse.ens.titech.ac.jp/ or https://urbanclimate.tse.ens.titech.ac.jp/database/AHE/AH4GUC/). Each pixel contains integer formats of AHE in units of W per sq. m. per 100,000. GeoTIFFs can be further analyzed or process using any GIS software or programming tools, such as R or Python.<br>Files prefixed "AHE_2010_" and "AHE_2050_" correspond to anthropogenic heat emissions for 2010s and 2050s, respectively. Prefixes followed by "year" corresponds to annual averages. Prefixes followed by a two-digit number corresponds to monthly-averaged values with the two-digit number corresponding to the month (i.e. "01" - January, "02" - February, ..., "12" - December) <br>For further details regarding its construction, kindly refer to the following article in Scientific Data:<br>Varquez, A.C.G., Kiyomoto, S., Khanh, D.N. et al. Global 1-km present and future hourly anthropogenic heat flux. Sci Data 8, 64 (2021). https://doi.org/10.1038/s41597-021-00850-w<br>
DOI: 10.6084/m9.figshare.23638379.v1
title: Supplemental Data 1 from Allometric wing growth links parental care to pterosaur giantism

description: Measurements of skeletal dimensions of individual specimens
DOI: 10.6084/m9.figshare.25231430.v3
title: Higher trophic levels and species with poorer dispersal traits are more susceptible to habitat loss on island fragments

description: Ongoing habitat loss and fragmentation caused by human activities represents one of the greatest causes of biodiversity loss. However, the effects of habitat loss and fragmentation are not felt equally among species. Here, we examined how habitat loss influenced the diversity and abundance of species from different trophic levels, with different traits, by taking advantage of an inadvertent experiment that created habitat islands from a once continuous forest via the creation of the Thousand Island Lake, a large reservoir in China. On 28 of these islands with more than a 9000-fold difference in their area (0.12 ha to 1154 ha), we sampled plants, herbivorous insects and predatory insects using effort-controlled sampling and analyses. This allowed us to discern whether any observed differences in species diversity were due to passive sampling alone, or rather due to demographic effects that disproportionately influenced some species relative to others. We found that while most metrics of sampling effort-controlled diversity increased with island area, the strength of the effect was exacerbated for species in higher trophic levels. When we more explicitly examined differences in species composition among islands, we found that the pairwise difference in species composition among islands was dominated by species turnover, but that nestedness increased with differences in island area, indicating that some species are more likely to be absent from smaller islands. Furthermore, by examining trends of several dispersal-related traits of species, we found that species with lower dispersal propensity tended to be those that were lost from smaller islands, which was observed for herbivorous and predatory insects. Our results emphasize the importance of incorporating within-patch demographic effects, as well as the taxa and traits of species when understanding the influence of habitat loss on biodiversity.
DOI: 10.6084/m9.figshare.3380458.v1
title: NanoWiki (release 3)

description: Third release of the NanoWiki dataset. This release extends the Linked Data feature, introducing owl:sameAs and skos:closeMatch. The first is used in the new ChEMBL bundle with a few derived fullerenes. A GEO bundle has also been added. Most nanomaterials are now linked directly to articles (with DOIs). The data now describes 420 nanomaterials with 900 measurements (physchem and bioassay data) from 43 research articles.
DOI: 10.6084/m9.figshare.5254549.v1
title: Morphological variation in invasive mosquito <i>Culex quinquefasciatus</i> Say (Diptera: Culicidae) larvae from an urban site in Auckland, New Zealand

description: Larvae of the invasive mosquito <i>Culex quinquefasciatus</i> Say are morphologically similar to those of the native <i>Culex pervigilans</i> Bergroth, yet distinguishing these species can be hampered by morphological variations in <i>Cx. quinquefasciatus.</i> We present detail about the extent of these variations in an urban population of <i>Cx. quinquefasciatus</i> in Auckland. To aid in identification of this exotic species, we provide images of key diagnostic characters and some observed exceptions to these. Details regarding variation in diagnostic characters for 90% of larvae, although these characters were not always visible. Other characters were less reliable, for instance, the expected position of seta 1a-S in relation to the pecten teeth was observed in &lt; 10% of larvae. Further exploration of regional morphological variation in both <i>Cx. quinquefasciatus</i> and <i>Cx. pervigilans</i> is recommended, ideally with associated molecular characterisation.
DOI: 10.6084/m9.figshare.19179266.v1
title: THUMOS14

description: THUMOS14 dataset
DOI: 10.6084/m9.figshare.23787363.v2
title: GGTWR data and codes

description: GGTWR data and codes
DOI: 10.6084/m9.figshare.23982693.v1
title: Soil Science

description: This dataset includes the STEM course outlines found in the study Agriculture-related courses in Canadian universities: how course outlines differ between social science and science faculties. The information from these course outlines was extracted, analyzed, and organized into themes.
DOI: 10.6084/m9.figshare.24587451.v1
title: Source Data.zip

description: Fig. 5 e and f in the manuscript "Wireless Power and Information Dual Transfer System via Magnetically Coupled Resonators". The parameters of the communication link are measured, and the communication performance is tested. Figs. 5e and 5f show the <i>S</i>-parameter sweep of the MCR channel by a VNA (E5061B), which corresponds to the theoretical calculation results and validates the channel model presented in the article.
DOI: 10.6084/m9.figshare.7776695.v1
title: Supplementary Material for: Medial Amygdala <b><i>Kiss1</i></b> Neurons Mediate Female Pheromone Stimulation of Luteinizing Hormone in Male Mice

description: <b><i>Background/Aims:</i></b> The medial amygdala (MeA) responds to olfactory stimuli and alters reproductive physiology. However, the neuronal circuit that relays signals from the MeA to the reproductive axis remains poorly defined. This study aimed to test whether MeA kisspeptin (MeA<sup>Kiss</sup>) neurons in male mice are sensitive to sexually relevant olfactory stimuli and transmit signals to alter reproductive physiology. We also investigated whether MeA<sup>Kiss</sup> neurons have the capacity to elaborate glutamate and GABA neurotransmitters and potentially contribute to reproductive axis regulation. <b><i>Methods:</i></b> Using female urine as a pheromone stimulus, MeA<sup>Kiss</sup> neuronal activity was analysed and serum luteinizing hormone (LH) was measured in male mice. Next, using a chemogenetic approach, MeA<sup>Kiss</sup> neurons were bi-directionally modulated to measure the effect on serum LH and evaluate the activation of the preoptic area. Lastly, using in situ<i></i> hybridization, we identified the proportion of MeA<sup>Kiss</sup> neurons that express markers for GABAergic (Vgat) and glutamatergic (Vglut2) neurotransmission. <b><i>Results:</i></b> Male mice exposed to female urine showed a two-fold increase in the number of c-Fos-positive MeA<sup>Kiss</sup> neurons concomitant with raised LH. Chemogenetic activation of MeA<sup>Kiss</sup> neurons significantly increased LH in the absence of urine exposure, whereas inhibition of MeA<sup>Kiss</sup> neurons did not alter LH. In situ<i></i> hybridization revealed that MeA<sup>Kiss</sup> neurons are a mixed neuronal population in which 71% express Vgat mRNA, 29% express Vglut2 mRNA, and 6% express both. <b><i>Conclusions:</i></b> Our results uncover, for the first time, that MeA<sup>Kiss</sup> neurons process sexually relevant olfactory signals to influence reproductive hormone levels in male mice, likely through a complex interplay of neuropeptide and neurotransmitter signalling.
DOI: 10.15468/dl.pus685
title: Occurrence Download

description: A dataset containing 6969 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ilex crenata Thunb.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 6969 records from 182 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013194-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.19328939.v5
title: MultiPic: Multilingual Picture Database

description: Database of name agreement and familiarity for a set of 500 colored pictures of concrete objects in 32 different languages (i.e., American English, Australian English, Basque, Belgium Dutch, British English, Catalan, Cypriot Greek, Czech, Finnish, French, German, Greek, Hebrew, Hungarian, Italian, Korean, Lebanese Arabic, Malay, Malay English, Mandarin Chinese, Netherlands Dutch, Norwegian, Polish, Portuguese, Quebec French, Rioplatense Spanish, Russian, Serbian, Slovak, Spanish, Turkish, Welsh).
DOI: 10.6084/m9.figshare.26496859.v2
title: Source and measurement data "Tailorable nanoparticles for magnetic water cleaning of polychlorinated biphenyls (PCBs)"

description: Source and measurement data for manuscript "Tailorable nanoparticles for magnetic water cleaning of polychlorinated biphenyls (PCBs)".<br>
DOI: 10.6084/m9.figshare.27265212.v2
title: High-resolution, noninvasive single-cell lineage tracing in mice and humans based on DNA methylation epimutations

description: In vivo lineage tracing holds great potential to reveal fundamental principles of tissue development and homeostasis. However, current lineage tracing in humans relies on extremely rare somatic mutations, which has limited temporal resolution and lineage accuracy. Here, we developed a generic lineage tracing tool based on frequent epimutations on DNA methylation, enabled by our new computational method MethylTree. Using both in-house and public single-cell genome-wide DNA methylation datasets with known lineage labels, MethylTree reconstructed lineage histories at nearly 100% accuracy across different cell types, developmental stages, and species. We demonstrated the epimutation-based single-cell multi-omic lineage tracing in mouse and human blood, where MethylTree recapitulated the differentiation hierarchy in hematopoiesis. Applying MethylTree to human embryos, we resolved cell division histories at an unprecedented temporal resolution and revealed early fate commitment at the four-cell stage for the first time. In native mouse blood, we identified previously unknown ~250 clones of hematopoietic stem cells. MethylTree opens the door for high-resolution, noninvasive, and multi-omic lineage tracing in humans and beyond.
DOI: 10.6084/m9.figshare.5480224.v1
title: CVD risk assessment sample dataset

description: The sample dataset was selected from Isfahan Cardiovascular Research Center (ICRC). It was de-identified due to the restrictions on individual-level data (Personal Health Information Protection Act) based on [1,2]. They could be used to identify 10-year CVD incidence risk based on the model proposed in the corresponding publication [3]. The representative age category could be used in the model instead of the exact age that had been removed since it was potentially identifying as the recruitment period was short and was fully described [1]. Since the Hazard Ratio of age was 1.038, the estimated risks are comparable to what was obtained with the exact age. The categories of Systolic Blood Pressure (SBP) and Total Cholesterol (Tch) were used in the model, and thus here provided. High waist-to-hip ratio (WHR) was defined as WHR ≥ 0.80 in women and ≥ 0.95 in men. 1. Hrynaszkiewicz I, Norton ML, Vickers AJ, Altman DG. Preparing raw clinical data for publication: guidance for journal editors, authors, and peer reviewers. BMJ. 2010;340, http://www.bmj.com/content/340/bmj.c181.long .2. National Heart, Lung and Blood Institute. Guidelines for Preparing Clinical Study Data Sets for Submission to the NHLBI Data Repository. https://www.nhlbi.nih.gov/research/funding/human-subjects/set-preparation-guidelines . 3. Nizal Sarrafzadegan, Razieh Hassannejad, Hamid Reza Marateb, Mohammad Talaei, Masoumeh Sadeghi, Hamid Reza Roohafza, Farzad Masoudkabir, Shahram OveisGharan, Marjan Mansourian, Mohammad Reza Mohebian, Miquel Angel Mañanas, "PARS Risk Charts: A 10-year Study of Risk Assessment for Cardiovascular Diseases in Eastern Mediterranean Region", submitted to PLOS One. <br>
DOI: 10.4121/uuid:aa82dd7e-e9e0-4268-9f8f-da6795749069
title: IDRA weather radar measurements - day 2014-04-19

description: Radar range: standard. Max rain level: moderate rain. Parent item: IDRA weather radar measurements - month 2014-04 Measuring instrument: IDRA atmospheric radar in CESAR observatory, Cabauw IRCTR has built a high resolution radar system, IDRA (IRCTR Drizzle Radar), aimed at the detailed observation of the spatial and temporal distribution of rainfall and drizzle. The system was placed at the end of August 2007 on top of a 213 m high meteorological tower in the CESAR (Cabauw Experimental Site for Atmospheric Research) observatory in Cabauw, The Netherlands. This location has several advantages: In the first place, an increased sensitivity due to the reduction of the influence of ground clutter. Secondly, it allows direct observation of the horizontal distribution of low level clouds and fog. Finally, the presence of other instruments in the vicinity enhances the understanding of the physical processes in the atmosphere by synergistically combining their measurements. Data from other instruments at CESAR are available at {http://www.cesar-database.nl}. IDRA provides the horizontal distribution of reflectivity, mean Doppler velocity, Doppler spectrum width and polarimetric parameters like differential reflectivity, linear depolarization ratio or specific differential phase. The data collected is freely available to the scientific community.
DOI: 10.6084/m9.figshare.13042886.v3
title: EPA Adverse Pathway Database (AOP-DB)_version 2_SQL_Entire Database_less Gene interactions Table

description: The uploaded files contain the entire data frame and associated data for the AOP-DB v.2 (Mortensen et al. Nature Data Descriptor, submitted). This record contains the first of two files: File 1)(“ aopdb_nogi_08-25-2020.sql.tar.gz") which is the whole database, except the gene_interactions table. This is a tar.gz file for all data tables and can be compiled by the user to reconstruct the AOP-DB v2 in their local environment.
DOI: 10.6084/m9.figshare.20510598.v3
title: SLaP mapper analysis of Blastocrithidia nonstop

description: SLaP mapper (http://www.stevekellylab.com/software/slap) analysis of identified trans-splicing and polyadenylation sites in Blastocrithidia nonstop genome, using regular transcriptome library and 3'-enriched RNA library. Also, the analyses made in the same method with a regular transcriptome library are provided for Novymonas esmeraldas and Blechomonas ayalai as a reference.
DOI: 10.6084/m9.figshare.21126166.v1
title: MAG52.functional_and_taxonomic_table.txt

description: Annotation files as described within the publication. From MetaPathways2.5
DOI: 10.6084/m9.figshare.23739492.v1
title: Mnova Spectroscopy Database by Compound

description: Spectroscopy Database organized by compound. To accompany Journal of Chemical Education paper "Spectroscopy Data for Undergraduate Teaching" by Van Bramer and Bastin. Data files are all in Mestre file format.
DOI: 10.6084/m9.figshare.23994429.v1
title: dataset1_Train_Positives.dat

description: This dataset contains positive samples used to train the PepCNN model for Dataset1
DOI: 10.17632/24fjxr8wcx
title: Proteomic characterization of standard collagen derived from calf skin, gelatine A from porcine skin and gelatine B from bovine skin

description: In our work, we aim to chemically characterize commercial collagen derived from calf skin, gelatine A from porcine skin and gelatine B from bovine skin. A bottom-up proteomics approach, including trypsin digestion in a heterogeneous phase followed by LC-MS/MS analysis and bioinformatics, is employed to investigate key chemical modifications in collagen such as oxidation of methionine residues, deamidation of asparagine and glutamine, and cleavage of the polypeptide chain. Data collected for commercially available collagen type I and gelatin from animal hides have been used as controls for the characterization of a set of gelatine-based animal glues, previously analyzed by Ntasi, G. et al. (10.17632/hbmc8yhf7y.5), allowing for a comparative analysis of the effects of different glue manufacturing methods. By elucidating the specific chemical modifications patterns that occur during various gelatinization processes, this research aims to understand their impact on the chemical integrity, structure and adhesive properties of collagen.
DOI: 10.17632/jtn6cbvkxx
title: The Impact of Trade Protectionism on International Tourism Flows

description: data on trade protectionism and tourism flows