cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc26101b
title: CCDC 2026750: Experimental Crystal Structure Determination

description: Related Article: Jamie L. Manson, Samuel P. M. Curley, Robert C. Williams, David Walker, Paul A. Goddard, Andrew Ozarowski, Roger D. Johnson, Anuradha M. Vibhakar, Danielle Y. Villa, Melissa L. Rhodehouse, Serena M. Birnbaum, John Singleton|2021|J.Am.Chem.Soc.|143|4633|doi:10.1021/jacs.0c12516
DOI: 10.5517/ccdc.csd.cc26102c
title: CCDC 2026751: Experimental Crystal Structure Determination

description: Related Article: Jamie L. Manson, Samuel P. M. Curley, Robert C. Williams, David Walker, Paul A. Goddard, Andrew Ozarowski, Roger D. Johnson, Anuradha M. Vibhakar, Danielle Y. Villa, Melissa L. Rhodehouse, Serena M. Birnbaum, John Singleton|2021|J.Am.Chem.Soc.|143|4633|doi:10.1021/jacs.0c12516
DOI: 10.5281/zenodo.4655174
title: light absorption

description: light absorption
DOI: 10.5281/zenodo.4655151
title: light absorption

description: light absorption
DOI: 10.6084/m9.figshare.14347862.v1
title: Significant number of small proteins with less than 50 amino acids remain uncharacterized in different microbial species

description: Small proteins have attracted significant research interest recently principally as it was a neglected class of proteins in the early proteomics era. Usually running far ahead of larger proteins during gel electrophoresis, small proteins typified by having fewer than 50 amino acid residues are not commonly analyzed and thus neglected. In addition, some mass spectrometry methods such as matrix-assisted laser desorption/ionization time of flight mass spectrometry (MALDI-TOF MS) could not ionize small proteins efficiently, or their flight time could not be timed precisely to afford routine detection of such proteins. On the other hand, while small proteins would theoretically be detected by liquid chromatography tandem mass spectrometry (LC-MS/MS), short retention time presents challenges to their facile analytical detection. Hence, the experimental picture of small proteins cast the light that they could not be efficiently detected and analyzed, which meant that they may not be well characterised. Such a postulation is validated by the present work that sought to understand the types of proteins that constitute small proteins in different microbial species. Results reveal that significant number of small proteins in different microbial species that span bacteria, archaea and eukaryotes are not characterised. No function or name could be annotated for such proteins, which suggests that understanding of their existence remain at the level of gene sequence profiled by automatic gene finder during whole-genome sequencing and assembly. This then opens up a vast vista for the detection, isolation, purification, and analysis of such uncharacterised proteins. Knowledge of their gene sequence offers the first step as it opens the way for their heterologous expression in <i>Escherichia coli</i>, which provides sufficient protein material for isolation, purification, and characterisation in downstream biochemical assays. Overall, knowledge of small proteins at the level of biochemical function, and binding partners remain poor due in large part of their uncharacterised status in different microbial species. Future work could build on our understanding of the genetic repertoire of microbial species to proactively express, through heterologous means, small proteins for biochemical characterisation. Attached with this preprint is a list of microorganisms with significant number of uncharacterised small proteins.
DOI: 10.6084/m9.figshare.14347862
title: Significant number of small proteins with less than 50 amino acids remain uncharacterized in different microbial species

description: Small proteins have attracted significant research interest recently principally as it was a neglected class of proteins in the early proteomics era. Usually running far ahead of larger proteins during gel electrophoresis, small proteins typified by having fewer than 50 amino acid residues are not commonly analyzed and thus neglected. In addition, some mass spectrometry methods such as matrix-assisted laser desorption/ionization time of flight mass spectrometry (MALDI-TOF MS) could not ionize small proteins efficiently, or their flight time could not be timed precisely to afford routine detection of such proteins. On the other hand, while small proteins would theoretically be detected by liquid chromatography tandem mass spectrometry (LC-MS/MS), short retention time presents challenges to their facile analytical detection. Hence, the experimental picture of small proteins cast the light that they could not be efficiently detected and analyzed, which meant that they may not be well characterised. Such a postulation is validated by the present work that sought to understand the types of proteins that constitute small proteins in different microbial species. Results reveal that significant number of small proteins in different microbial species that span bacteria, archaea and eukaryotes are not characterised. No function or name could be annotated for such proteins, which suggests that understanding of their existence remain at the level of gene sequence profiled by automatic gene finder during whole-genome sequencing and assembly. This then opens up a vast vista for the detection, isolation, purification, and analysis of such uncharacterised proteins. Knowledge of their gene sequence offers the first step as it opens the way for their heterologous expression in <i>Escherichia coli</i>, which provides sufficient protein material for isolation, purification, and characterisation in downstream biochemical assays. Overall, knowledge of small proteins at the level of biochemical function, and binding partners remain poor due in large part of their uncharacterised status in different microbial species. Future work could build on our understanding of the genetic repertoire of microbial species to proactively express, through heterologous means, small proteins for biochemical characterisation. Attached with this preprint is a list of microorganisms with significant number of uncharacterised small proteins.
DOI: 10.25345/c5m22j
title: MassIVE MSV000087138 - JAK2-CHK2 signaling safeguards the integrity of the mitotic spindle assembly checkpoint and genome stability
title: This dataset consists of 1 raw MS file and associated peak list and result file, acquired on an Orbitrap Elite mass spectrometer operated in Data Dependent Acquisition mode. The files are associated with a manuscript submitted for publication. Publication title: "JAK2-CHK2 signaling safeguards the integrity of the mitotic spindle assembly checkpoint and genome stability"
DOI: 10.6084/m9.figshare.14347625
title: Univ_of_Georgia_Pazdro_MURGIGV01_20181129_FinalReport.txt

description: Genotype data from GeneSeek
DOI: 10.6084/m9.figshare.14347625.v1
title: Univ_of_Georgia_Pazdro_MURGIGV01_20181129_FinalReport.txt

description: Genotype data from GeneSeek
DOI: 10.6084/m9.figshare.14347631.v1
title: Univ_of_Georgia_Pazdro_MURGIGV01_20190516_FinalReport.txt

description: Genotype data from GeneSeek
DOI: 10.6084/m9.figshare.14347631
title: Univ_of_Georgia_Pazdro_MURGIGV01_20190516_FinalReport.txt

description: Genotype data from GeneSeek
DOI: 10.6084/m9.figshare.14347643
title: Univ_of_Georgia_Pazdro_MURGIGV01_20200226_FinalReport.txt

description: Genotype data from GeneSeek
DOI: 10.6084/m9.figshare.14347643.v1
title: Univ_of_Georgia_Pazdro_MURGIGV01_20200226_FinalReport.txt

description: Genotype data from GeneSeek
DOI: 10.25345/c5gb9q
title: MassIVE MSV000087139 - Nanoscale Proteomics of T Cell Subtypes in Peripheral Blood of Single Multiple Myeloma Patients
title: FACS allowed for efficient and accurate classification of specific immune cell types in peripheral blood. Optimized FACS and SISPROT protocols were used for integrated sample preparation to minimize sample loss. MS parameters were optimized synchronously for nanoscale proteomics with much higher sensitivity. Nanoscale proteomic analysis was conducted for eight T cell subtypes from single MM patients. Machine learning-based subtyping strategy was developed for accurate classification of eight T cell subtypes independent of individual differences.
DOI: 10.6084/m9.figshare.14348048
title: next-door-to-love-1.mp3

description: the example data of one subject
DOI: 10.6084/m9.figshare.14348048.v1
title: next-door-to-love-1.mp3

description: the example data of one subject
DOI: 10.21227/rvn0-6508
title: February-3-Rivera-Sergio

description: February-3-Rivera-Sergio
DOI: 10.25345/c5bj7s
title: MassIVE MSV000087140 - Brachypodium distachyon root exudates and untargeted metabolomics
title: Metabolomic profiling of B. distachyon root exudates during root pre-contact with the fungal pathogen Fusarium graminearum using LC-MS/MS SWATH
DOI: 10.25921/kg17-0s30
title: Deepwater Benthic Communities data for the Deepwater Horizon Response and Assessment in the Gulf of Mexico, dating from 2009-09-11 to 2016-02-16
DOI: 10.25921/wqzj-ma55
title: Marine Fish data for the Deepwater Horizon Response and Assessment in the Gulf of Mexico, dating from 2010-04-30 to 2015-04-24
DOI: 10.25921/q6zn-cc25
title: Marine Mammals and Sea Turtles data for the Deepwater Horizon Response and Assessment in the Gulf of Mexico, dating from 2001-06-19 to 2016-02-16
DOI: 10.25921/dj1z-f137
title: Oyster data for the Deepwater Horizon Response and Assessment in the Gulf of Mexico, dating from 2003-06-18 to 2015-12-04
DOI: 10.25921/3fsk-vy92
title: Submerged Aquatic Vegetation Data for the Deepwater Horizon Response and Assessment, Dating from 2010-05-03 to 2011-10-25
DOI: 10.25921/0mn0-dp43
title: Shallow Water Coral Reefs data for the Deepwater Horizon Response and Assessment in the Gulf of Mexico, dating from 2010-05-27 to 2014-09-04
DOI: 10.25921/8ct3-6x88
title: Shoreline Data for the Deepwater Horizon Response and Assessment, Dating from 2010-05-14 to 2015-10-09
DOI: 10.25921/01g1-mp57
title: Water Column and Invertebrate data for the Deepwater Horizon Response and Assessment in the Gulf of Mexico, dating from 2010-05-05 to 2016-03-31
DOI: 10.25909/12814589.v1
title: Interview Sessions Czech South Australian Study

description: This dataset contains six interviews. Six participants are speaking with the researcher about borrowing between their languages. <br>The data is in English. It was used for analysis of the language contact situation between Czech and English in South Australia.
DOI: 10.25919/fzda-qg45
title: Parkes observations for project P595 semester 2020OCTS_17

description: We propose to continue the PULSE@Parkes project in which high school students from Australia and around the World use the Parkes radio telescope in a remote observing model to observe and analyse pulsar data. The data from some PULSE@Parkes observations are used to support the FERMI Gamma ray mission, other observations supplement the P456 Pulsar Timing Array project and the remainder were chosen in order to make a detailed analysis of pulsar timing irregularities and intermittency.
DOI: 10.6084/m9.figshare.14348042
title: Source Data for Study by Bifulco et al.

description: These source data are intended to complement our manuscript, currently posted as a preprint on medRxiv (doi: 10.1101/2020.09.03.20184051) and in revision with eLife. See manuscript for more details.<br>Abbreviations: AFib = atrial fibrillation; ESUS = embolic stroke of undetermined source; RD = reentrant driver; LA = left atrium<b><br></b><b>Fig. 2 - Source Data.</b> Spreadsheet including source data underlying <b>Fig. 2</b>: ESUS and AFib patient ID numbers; inducibility status (i.e., whether RD-sustained arrhythmia was observed in the corresponding patient-specific LA model); and LA volumetric fibrosis burden (%) extracted directly from clinical report. <b>Fig. 3 - Source Data. </b>Spreadsheet including source data underlying <b>Fig. 3</b>: For each LA model used in the study: number of pacing sites that induced RD-sustained arrhythmia; number of unique RD locations; percentage of tissue significantly depolarized in quiescent state, as presented in <b>Fig. 3F</b>. <b>Fig. 5 - Source Data. </b>Spreadsheet including source data underlying <b>Fig. 5</b>: For each episode of RD-sustained arrhythmia induced in each patient-specific LA model, the location of the pacing associated pacing site and the LA region in which the RD ultimately anchored are provided. <b>Fig. 6 - Source Data. </b>Spreadsheet including source data underlying <b>Fig. 6</b>: For each LA model used in the study, proportion of pro-RD tissue (as calculated by previously-established machine learning-based analysis of fibrosis spatial pattern) in each LA region.
DOI: 10.25921/1590-1t35
title: Human Use data for the Deepwater Horizon Response and Assessment in the Gulf of Mexico, dating from 2014-11-21 to 2015-05-21
DOI: 10.25921/4e7e-ms59
title: Nearshore Sediment and Water data for the Deepwater Horizon Response and Assessment in the Gulf of Mexico, dating from 2010-06-21 to 2011-03-24
DOI: 10.6084/m9.figshare.14349404
title: Absorbency of biodegradable materials for MHM management in low-and-middle income countries

description: Four different kinds of natural biodegradable material namely (a) 100 % cotton terry cloth, (b) 100 % hemp cloth, (c) 100 % bamboo wadding and (d) 100 % linen were investigated in this study to find out their respective absorptivity index. All the fabrics are commercially available in bulk off the shelf and procured accordingly. The fabrics were cut by hand to give them a rectangular shape and stacked to 1 cm thickness. Together with that, the absorbency of a regular, store-bought sanitary pad (1 cm thick) was investigated as a comparison for the other materials. To ensure reproducibility of the results, all the experiments were triplicated. A gelatine solution was used to imitate the viscosity of menstrual fluid to provide a more realistic experiment. The typical volume of menstrual fluid lost during a monthly menstrual cycle is about 10-80 mL over eight days (average menstrual cycle). In present study, 20 mL of liquid (gelatine solution) was used to test the absorbency of these natural materials to ensure that the fabrics can retain more than one day’s worth of menstrual fluid. At first, 10 g of gelatine was added into 300 ml of water and heated (60 °C) with stirring until there were no remaining gelatine particles visible. The solution was then split up into 15 x 20 ml volumes for each fabric. The temperature of each solution was then checked to ensure the liquid was at room temperature (21°C) to maintain a constant gelatine solution viscosity, visually representative of menstrual fluid that could remain across each test fabric. Then each of the test fabrics was weighed in precision lab-scale, placed into the container of the same size and 20 ml of the gelatine solution was poured. After 60 seconds, the fabric was removed from the container and weighed again. The absorptivity index (ratio of absorbed mass to dry weight) was calculated. An absorptivity index was used to ensure that the results could be comparable, as each fabric has a different dry weight, and were hence incomparable. Parallax and reading errors were reduced by setting each measuring cylinder down on a flat surface and measuring the gelatine liquid from eye-level. Random cross checks were conducted by a lab assistant.
DOI: 10.6084/m9.figshare.14349293
title: Global Distribution of Morphometric Boundaries in Modern Deltas Dataset.xlsx

description: The dataset provided is in conjuction with the manuscript provided by the same authors. This contains the list of 105 river deltas globally with their water discharge, avulsion, knickpoint, backwater lengths measured from the shoreline and valley-exit-to-shoreline distance. Also, the catchment area, valley-type and climate of the river delta are provided in this dataset.
DOI: 10.6084/m9.figshare.14349293.v1
title: Global Distribution of Morphometric Boundaries in Modern Deltas Dataset.xlsx

description: The dataset provided is in conjuction with the manuscript provided by the same authors. This contains the list of 105 river deltas globally with their water discharge, avulsion, knickpoint, backwater lengths measured from the shoreline and valley-exit-to-shoreline distance. Also, the catchment area, valley-type and climate of the river delta are provided in this dataset.
DOI: 10.6084/m9.figshare.14349647
title: Supplementary Material for: Primary Retroperitoneal Filariasis Presenting with Acute Abdomen

description: Lymphatic filariasis is a common tropical parasitic infection caused by the Nematoda Filarioidae family. Filariasis predominantly affects the lymphoreticular system, leading to lymphedema, elephantiasis, hydrocele, and chyluria. However, its presentation as retroperitoneal cyst is very rare with a reported incidence rate of 1/105,000. We present a rare case of a previously healthy 26-year-old male presenting with abdominal and groin pain associated with chills and vomiting. Computerized tomography scan showed extensive cystic retroperitoneal lesion and ultrasound demonstrated “Dancing Filarial Sign.” Retroperitoneal filariasis can present without peripheral filarial signs. Hence, it should be considered in the differential diagnosis of acute abdominal pain of a patient who is originally from an endemic area.
DOI: 10.5281/zenodo.4655289
title: Global InMAP CEDS - OSM - WorldPop data and configuration

description: This directory contains data for use in running global InMAP simulations with CEDS emissions, downscaled to intra-urban spatial resolution using OpenStreetMap and other data sources, and using WorldPop population data. It supplements the data available here. <strong>Contents</strong> <em>emissions</em> directory: CEDS emissions files, and the jupyter notebooks used to preprocess them. Additional information is available in the contained README.md file. <em>worldpop_2020.ncf</em>, downloaded from https://www.worldpop.org/ (All licenses apply) <em>inmap.toml</em>: InMAP configuration file for use with the CEDS and WorldPop data. It includes references to the <em>srgspec_osm.json</em> and <em>srgspec_smoke.csv</em> files, which provide additional configuration for downscaling emissions within the CEDS grid cells. To run the model as configured here, you will also need to obtain the data here, as well as the Global Power Emissions Database (GPED) and the OpenStreetMap database (direct download here (large file)) <br>
DOI: 10.5281/zenodo.4655288
title: Global InMAP CEDS - OSM - WorldPop data and configuration

description: This directory contains data for use in running global InMAP simulations with CEDS emissions, downscaled to intra-urban spatial resolution using OpenStreetMap and other data sources, and using WorldPop population data. It supplements the data available here. <strong>Contents</strong> <em>emissions</em> directory: CEDS emissions files, and the jupyter notebooks used to preprocess them. Additional information is available in the contained README.md file. <em>worldpop_2020.ncf</em>, downloaded from https://www.worldpop.org/ (All licenses apply) <em>inmap.toml</em>: InMAP configuration file for use with the CEDS and WorldPop data. It includes references to the <em>srgspec_osm.json</em> and <em>srgspec_smoke.csv</em> files, which provide additional configuration for downscaling emissions within the CEDS grid cells. To run the model as configured here, you will also need to obtain the data here, as well as the Global Power Emissions Database (GPED) and the OpenStreetMap database (direct download here (large file)) <br>
DOI: 10.6084/m9.figshare.14349908
title: Supplementary Material for: New-Onset Perioperative Atrial Fibrillation Is Associated with Increased All-Cause Mortality in Elderly Patients Undergoing Total Knee and Hip Replacements

description: <b><i>Introduction:</i></b> Total hip arthroplasty (THA) and total knee arthroplasty (TKA) are common surgeries performed in elderly patients with osteoarthritis. Limited data address the clinical significance of perioperative atrial fibrillation (AF) in these patients. This study aimed to determine whether preexisting or new-onset AF is associated with increased 1-year all-cause mortality rates in the elderly population. <b><i>Methods:</i></b> 280 patients over the age of 60 undergoing THA or TKA with perioperative AF and 280 control-matched patients were retrospectively identified, and their files reviewed. The primary end point was 1-year all-cause mortality from the date of the surgery. <b><i>Results:</i></b> Of the 280 patients with perioperative AF, 37 had new-onset AF with a 1-year all-cause mortality rate of 10.8%. This mortality was significantly higher in patients with new-onset AF compared to patients without AF or patients with previous AF (10.8% vs. 1.1% and 2.5%, respectively; <i>p</i> = 0.005). On multivariate analysis, this difference remained significant after adjustment for risk factors associated with all-cause mortality. <b><i>Conclusions:</i></b> One-year all-cause mortality in elderly patients undergoing TKA or THA is significantly increased in the patients that develop new postoperative AF. These patients warrant increased clinical surveillance following surgery.
DOI: 10.6084/m9.figshare.14349908.v1
title: Supplementary Material for: New-Onset Perioperative Atrial Fibrillation Is Associated with Increased All-Cause Mortality in Elderly Patients Undergoing Total Knee and Hip Replacements

description: <b><i>Introduction:</i></b> Total hip arthroplasty (THA) and total knee arthroplasty (TKA) are common surgeries performed in elderly patients with osteoarthritis. Limited data address the clinical significance of perioperative atrial fibrillation (AF) in these patients. This study aimed to determine whether preexisting or new-onset AF is associated with increased 1-year all-cause mortality rates in the elderly population. <b><i>Methods:</i></b> 280 patients over the age of 60 undergoing THA or TKA with perioperative AF and 280 control-matched patients were retrospectively identified, and their files reviewed. The primary end point was 1-year all-cause mortality from the date of the surgery. <b><i>Results:</i></b> Of the 280 patients with perioperative AF, 37 had new-onset AF with a 1-year all-cause mortality rate of 10.8%. This mortality was significantly higher in patients with new-onset AF compared to patients without AF or patients with previous AF (10.8% vs. 1.1% and 2.5%, respectively; <i>p</i> = 0.005). On multivariate analysis, this difference remained significant after adjustment for risk factors associated with all-cause mortality. <b><i>Conclusions:</i></b> One-year all-cause mortality in elderly patients undergoing TKA or THA is significantly increased in the patients that develop new postoperative AF. These patients warrant increased clinical surveillance following surgery.
DOI: 10.25345/c56v4h
title: MassIVE MSV000087141 - GNPS - Paenibacillus in spent coffee grounds
title: Cultures of Paenibacillus alvei DSM-29 NCBI:txid1206781 | Paenibacillus polymyxa DSM-36 NCBI:txid1406 | Paenibacillus peoriae DSM-8320 NCBI:txid1087481 in spent coffee grounds. Extracts of 100% MeOH analyzed by LC-MS/MS. Data acquired in positive ion mode.
DOI: 10.17632/5d6k4r9d4j.1
title: Mobile phone usage and incidences & deaths due to malignant neoplasm of the brain in Taiwan

description: Mobile phone usage and incidences and deaths due to malignant neoplasm of the brain in Taiwan