cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.f52wnk
title: Occurrence Download

description: A dataset listing the 69915 species recorded in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((30.1 10.1,40 40,20 40,10 20,30.1 10.1))"
 ]
}

 The dataset's 69915 records were derived from 1451 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015782-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25389502.v1
title: Additional file 1 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 1: Table S1. Main clinical and epidemiological characteristics of the study population. All RA patients, RA patients at baseline, RA patients after 12 weeks of TNFi therapy and control individuals are separately characterized. Abbreviations: N, sample size; NA, not applicable; M, mean; RA, rheumatoid arthritis.
DOI: 10.6084/m9.figshare.25389926
title: Additional file 2 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 2: Table S2. Summary of the quantitative AIRR-seq information available for analysis. The number of UMIs, clones, UMIs per sample and clones per sample are provided separately for each of the seven immune receptor chains. The total number of successfully assembled and demultiplexed reads is provided at the sample level. Information of technical variables (i.e., Sequencing plate, RNA concentration and RNA integrity) is also provided. Abbreviations: N, number; M, mean; RA, rheumatoid arthritis.
DOI: 10.6084/m9.figshare.25389926.v1
title: Additional file 2 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 2: Table S2. Summary of the quantitative AIRR-seq information available for analysis. The number of UMIs, clones, UMIs per sample and clones per sample are provided separately for each of the seven immune receptor chains. The total number of successfully assembled and demultiplexed reads is provided at the sample level. Information of technical variables (i.e., Sequencing plate, RNA concentration and RNA integrity) is also provided. Abbreviations: N, number; M, mean; RA, rheumatoid arthritis.
DOI: 10.6084/m9.figshare.26691625
title: Additional file 4 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 4: Table S3. Diversity association with rheumatoid arthritis. For each immune receptor chain and diversity measure, both the statistical significance and effect size of the association are shown.
DOI: 10.6084/m9.figshare.26691625.v1
title: Additional file 4 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 4: Table S3. Diversity association with rheumatoid arthritis. For each immune receptor chain and diversity measure, both the statistical significance and effect size of the association are shown.
DOI: 10.6084/m9.figshare.26691634.v1
title: Additional file 6 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 6: Table S4. Diversity association with clinical phenotypes in rheumatoid arthritis. The statistical significance and effect size of the association between each diversity measure and clinical phenotype are shown. The information is presented at the chain level.
DOI: 10.6084/m9.figshare.26691634
title: Additional file 6 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 6: Table S4. Diversity association with clinical phenotypes in rheumatoid arthritis. The statistical significance and effect size of the association between each diversity measure and clinical phenotype are shown. The information is presented at the chain level.
DOI: 10.6084/m9.figshare.26691637
title: Additional file 7 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 7: Table S5. Diversity association with TNFi therapy in rheumatoid arthritis. For each immune receptor chain and diversity measure, both the statistical significance and effect size of the longitudinal association is shown.
DOI: 10.6084/m9.figshare.26691637.v1
title: Additional file 7 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 7: Table S5. Diversity association with TNFi therapy in rheumatoid arthritis. For each immune receptor chain and diversity measure, both the statistical significance and effect size of the longitudinal association is shown.
DOI: 10.6084/m9.figshare.26691640.v1
title: Additional file 8 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 8: Table S6. Diversity variation association with TNFi therapy in rheumatoid arthritis stratified by clinical response. For each immune receptor chain and diversity measure, both the statistical significance and effect size of the longitudinal association is separately shown for responders and non-responders to TNFi therapy.
DOI: 10.6084/m9.figshare.26691643
title: Additional file 9 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 9: Table S7. Summary statistics of the single clone analysis at the longitudinal level. For each chain, the number of clones that are significantly contracted and expanded after 12 weeks of TNFi therapy is shown. Detailed information on the CDR3 amino acid sequence of the significant clones is provided at the sample level. Gene usage information of contracted clones is also provided. Abbreviations: N, number of clones; NA, not applicable; P, P-value.
DOI: 10.6084/m9.figshare.26691643.v1
title: Additional file 9 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 9: Table S7. Summary statistics of the single clone analysis at the longitudinal level. For each chain, the number of clones that are significantly contracted and expanded after 12 weeks of TNFi therapy is shown. Detailed information on the CDR3 amino acid sequence of the significant clones is provided at the sample level. Gene usage information of contracted clones is also provided. Abbreviations: N, number of clones; NA, not applicable; P, P-value.
DOI: 10.6084/m9.figshare.26691646
title: Additional file 10 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 10: Table S8. Summary statistics of the CDR3 amino acid sequence similarity analysis among all contracted and expanded clones. For each chain, the number of permutations used to determine the statistical significance of the sequence similarity is shown together with the observed and permuted degree centrality values. Abbreviations: N, number of permutations; M, mean.
DOI: 10.6084/m9.figshare.26691640
title: Additional file 8 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 8: Table S6. Diversity variation association with TNFi therapy in rheumatoid arthritis stratified by clinical response. For each immune receptor chain and diversity measure, both the statistical significance and effect size of the longitudinal association is separately shown for responders and non-responders to TNFi therapy.
DOI: 10.6084/m9.figshare.26691646.v1
title: Additional file 10 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 10: Table S8. Summary statistics of the CDR3 amino acid sequence similarity analysis among all contracted and expanded clones. For each chain, the number of permutations used to determine the statistical significance of the sequence similarity is shown together with the observed and permuted degree centrality values. Abbreviations: N, number of permutations; M, mean.
DOI: 10.6084/m9.figshare.26691649
title: Additional file 11 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 11: Table S9. Summary statistics of the CDR3 amino acid sequence similarity analysis among contracted and expanded clones detected in responder and non-responders to TNF inhibition. For each chain, the number of permutations used to determine the statistical significance of the sequence similarity is shown together with the observed and permuted degree centrality values. Abbreviations: N, number of permutations; M, mean.
DOI: 10.6084/m9.figshare.26691649.v1
title: Additional file 11 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 11: Table S9. Summary statistics of the CDR3 amino acid sequence similarity analysis among contracted and expanded clones detected in responder and non-responders to TNF inhibition. For each chain, the number of permutations used to determine the statistical significance of the sequence similarity is shown together with the observed and permuted degree centrality values. Abbreviations: N, number of permutations; M, mean.
DOI: 10.6084/m9.figshare.26691655.v1
title: Additional file 13 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 13: Table S10. Chain usage association with TNFi therapy in rheumatoid arthritis. The statistical significance and effect size of the longitudinal association is shown for each of the seven immune receptor chains.
DOI: 10.6084/m9.figshare.26691655
title: Additional file 13 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 13: Table S10. Chain usage association with TNFi therapy in rheumatoid arthritis. The statistical significance and effect size of the longitudinal association is shown for each of the seven immune receptor chains.
DOI: 10.6084/m9.figshare.26691658
title: Additional file 14 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 14: Table S11. Gene segment usage association with rheumatoid arthritis. The summary statistics resulting from the association between each V, J and VJ gene segments with rheumatoid arthritis are shown. Abbreviations: FDR, false discovery rate.
DOI: 10.6084/m9.figshare.26691658.v1
title: Additional file 14 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 14: Table S11. Gene segment usage association with rheumatoid arthritis. The summary statistics resulting from the association between each V, J and VJ gene segments with rheumatoid arthritis are shown. Abbreviations: FDR, false discovery rate.
DOI: 10.18739/a2qv3c35r
title: UpTempO buoys deployed in the Arctic Ocean in 2014

description: These 2014 UpTempO buoys provide ocean temperature data for the upper 30 to 60m layer at increments of 2.5m to 10m.
 Several buoys, identified below as "SIZRS", were deployed via airdrop from a US CG C-130, while all others were deployed via ships of oppurtunity. The deployment ship for each buoy is included in its name. All bouys reported their data hourly via satellite.
 Theses UpTempO buoys were deployed in the Arctic Ocean between July and October of 2014. Data provided here are from buoys that have stopped reporting. For plots and track maps of these buoys, and for weekly updated data and plots for buoys that are currently reporting, please visit our website at http://psc.apl.washington.edu/UpTempO/Data.php.
 The ascii data provided here are the raw translation from the buoy's binary transmission. A quality controlled UpTempO data product will become available on ACADIS by the end of 2015.
 The following quantities (reported hourly) are available:
 
 
 
 Temperature at nominal depths (typically between 2.5 and 60 m).
 
 
 Ocean Pressure at 2 or 3 nominal depths. There is always one at the bottom of the chain.
 
 
 Sea Level Pressure
DOI: 10.15468/dl.vtqxdd
title: Occurrence Download

description: A dataset containing 6691 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tsuga (Endl.) Carrière",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6691 records from 135 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0091060-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zhwcud
title: Occurrence Download

description: A dataset containing 36802 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 {
 "or" : [
 "TaxonKey is Acropogon Schltr.",
 "TaxonKey is Argyrodendron F.Muell.",
 "TaxonKey is Brachychiton Schott & Endl.",
 "TaxonKey is Cola Schott & Endl.",
 "TaxonKey is Firmiana Marsili",
 "TaxonKey is Franciscodendron B.P.M.Hyland & Steenis",
 "TaxonKey is Heritiera Aiton",
 "TaxonKey is Octolobus Welw.",
 "TaxonKey is Pterocymbium R.Br.",
 "TaxonKey is Pterygota",
 "TaxonKey is Scaphium Schott & Endl.",
 "TaxonKey is Sterculia L."
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 36802 records from 286 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002343-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18739/a2m32n90f
title: UpTempO buoys deployed in the Arctic Ocean in 2016

description: These 2016 UpTempO buoys provide ocean temperature data for the upper 20m to 60m layer at increments of 2.5m to 10m. Buoys also include a hull thermistor.
 Buoys were deployed via ships of opportunity, and at the 2016 ICEX ice camp. The deployment ship/camp for each buoy is included in its name. All buoys reported their data hourly via satellite.
 Theses UpTempO buoys were deployed in the Arctic Ocean between March and August of 2016. Data provided here are from buoys that have stopped reporting. For plots and track maps of these buoys, and for weekly updated data and plots for buoys that are currently reporting, please visit our website at http://psc.apl.washington.edu/UpTempO/Data.php.
 The ascii data provided here are the raw translation from the buoy's binary transmission. For Level 2 quality controlled and enhanced data visit our website at http://psc.apl.washington.edu/UpTempO/Data.php.
 The following quantities (reported hourly) are available:
 
 
 
 Temperature at nominal depths (typically between 2.5 and 60 m).
 
 
 Ocean Pressure at 1 or 3 nominal depths. There is always one at the bottom of the chain.
 
 
 Sea Level Pressure
 
 
 Some buoys contain Salinity and Temperature at ~4m from a seabird CT
DOI: 10.15468/dl.plxpcb
title: Occurrence Download

description: A dataset containing 93481 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 2012-2019",
 "HasCoordinate is true",
 "TaxonKey is Lonicera L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 93481 records from 314 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004013-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v0zzes
title: Occurrence Download

description: A dataset containing 390479 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ericaceae",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2008"
 ]
}

 The dataset includes 390479 records from 419 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012459-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.98m3pn
title: Occurrence Download

description: A dataset containing 17149 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1989-2019",
 "HasCoordinate is true",
 "TaxonKey is Podocarpaceae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 17149 records from 261 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015771-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18739/a2gb1xg6p
title: UpTempO buoys deployed in the Arctic Ocean in 2017

description: These 2017 UpTempO buoys provide ocean temperature data for the upper 20m to 60m layer at increments of 2.5m to 10m. Buoys also include a hull thermistor.
 Buoys identified below as "SIZRS", were deployed via airdrop from a US CG C-130, while all others were deployed via ships of oppurtunity. The deployment ship for each buoy is included in its name. All bouys reported their data hourly via satellite.
 Theses UpTempO buoys were deployed in the Arctic Ocean between July and September of 2017. Data provided here are from buoys that have stopped reporting. For plots and track maps of these buoys, and for weekly updated data and plots for buoys that are currently reporting, please visit our website at http://psc.apl.washington.edu/UpTempO/Data.php.
 The ascii data provided here are the raw translation from the buoy's binary transmission. For Level 2 quality controlled and enhanced data visit our website at http://psc.apl.washington.edu/UpTempO/Data.php.
 The following quantities (reported hourly) are available:
 
 
 
 Temperature at nominal depths (typically between 2.5 and 60 m).
 
 
 Ocean Pressure at 1 or 3 nominal depths. There is always one at the bottom of the chain.
 
 
 Sea Level Pressure
 
 
 Some buoys contain Salinity and Temperature at ~4m from a seabird CT
DOI: 10.18739/a2bk16p2x
title: UpTempO Buoys Deployed in 2013

description: Each file in this dataset contains data pertaining to one UpTempO buoy deployed in the Arctic Ocean in August and September of 2013. Data values for each buoy include paired values of nominal depth (m) and temperature down to 60 or 80m, pressure at one to three nominal depths, and sea level pressure.
DOI: 10.15468/dl.v5vpnw
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Nannoglottis carpesioides Maxim.)"
 ]
}

 The dataset includes 46 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027659-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18739/a2fb4wk6f
title: PAHs and SOA versus primary carbonaceous aerosols

description: We use the chemical transport model GEOS-
Chem to evaluate the hypothesis that atmospheric polycyclic
aromatic hydrocarbons (PAHs) are trapped in secondary
organic aerosol (SOA) as it forms. We test the ability of three
different partitioning configurations within the model to
reproduce observed total concentrations in the midlatitudes
and the Arctic as well as midlatitude gas-particle phase
distributions. The configurations tested are (1) the GEOS-
Chem default configuration, which uses instantaneous
equilibrium partitioning to divide PAHs among the gas
phase, a primary organic matter (OM) phase (absorptive),
and a black carbon (BC) phase (adsorptive), (2) an SOA configuration in which PAHs are trapped in SOA when emitted and slowly evaporate from SOA thereafter, and (3) a configuration in which PAHs are trapped in primary OM/BC upon emission and subsequently slowly evaporate. We also test the influence of changing the fraction of PAHs available for particle-phase oxidation. Trapping PAHs in SOA particles upon formation and protecting against particle-phase oxidation (2) better simulates observed remote concentrations compared to our default configuration (1). However, simulating adsorptive partitioning to BC is required to reproduce the magnitude and seasonal pattern of gasâ particle phase distributions. Thus, the last configuration (3) results in the best agreement between observed and simulated concentration/phase distribution data. The importance of BC rather than SOA to PAH transport is consistent with strong observational evidence that PAHs and BC are coemitted.
DOI: 10.5281/zenodo.12655607
title: Primary MS data and secondary data for: "Post-proline cleaving enzymes also show specificity to reduced cysteine"

description: raw LC-MS/MS data (Bruker Daltonics - timsTOF Pro and tims TOF SCP) and ESI-MS data (Bruker Daltonics - 15T ESI/MALDI FT-ICR MS) and related MASCOT generic files (.mgf) and search results (.csv) plus corresponding custom databases (*.fasta)