cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5760392
title: Supplementary Information for "UV-Spectroscopic Detection of (Pyro-)Phosphate with the PUB module"

description: This is the external Supplementary Information for our publication "UV-Spectroscopic Detection of (Pyro-)Phosphate with the PUB module". The .pdf file contains the Supplementary Information: author contributions, accessibility statement, experimental procedures, additional discussions and supplementary items, among others. The .zip file contains the raw data and metadata for all items (supplementary and main text) as well as the calculation results. To some extent, this work builds on and borrows from our previous publications on spectral unmixing (https://doi.org/10.3390/mps2030060, https://doi.org/10.1002/cbic.202000204) and thermodynamic reaction control (https://doi.org/10.1002/adsc.201901230, https://doi.org/10.1002/cphc.202000901, https://doi.org/10.1021/acscatal.1c02589).
DOI: 10.5281/zenodo.5734256
title: Supplementary Information for "UV-Spectroscopic Detection of (Pyro-)Phosphate with the PUB module"

description: This is the external Supplementary Information for our publication "UV-Spectroscopic Detection of (Pyro-)Phosphate with the PUB module". The .pdf file contains the Supplementary Information: author contributions, accessibility statement, experimental procedures, additional discussions and supplementary items, among others. The .zip file contains the raw data and metadata for all items (supplementary and main text) as well as the calculation results. To some extent, this work builds on and borrows from our previous publications on spectral unmixing (https://doi.org/10.3390/mps2030060, https://doi.org/10.1002/cbic.202000204) and thermodynamic reaction control (https://doi.org/10.1002/adsc.201901230, https://doi.org/10.1002/cphc.202000901, https://doi.org/10.1021/acscatal.1c02589).
DOI: 10.5281/zenodo.5760482
title: Open-Source Terraform Repositories - SAST (tfsec, terrascan, checkov) vulnerability snapshot

description: Vulnerability findings of open-source Terraform repositories in GitHub, collected with 3 static-code analysis tools (tfsec, terrascan, checkov).
DOI: 10.5281/zenodo.5760481
title: Open-Source Terraform Repositories - SAST (tfsec, terrascan, checkov) vulnerability snapshot

description: Vulnerability findings of open-source Terraform repositories in GitHub, collected with 3 static-code analysis tools (tfsec, terrascan, checkov).
DOI: 10.17894/ucph.5601175c-e786-43ef-ab40-15026a16303a
title: A two-step metagenomics approach for prey identification from the blood meals of common vampire bats (Desmodus rotundus)
DOI: 10.5281/zenodo.5752953
title: Datasets: Carbon sources and pathways for citrate secreted by human prostate cancer cells determined by NMR tracing and metabolic modeling

description: Zipped NMR datasets: data1 LNCaP medium with [U-<sup>13</sup>C<sub>4</sub>]aspartate data2 LNCaP medium with [1,6-<sup>13</sup>C<sub>2</sub>]glucose data3 LNCaP medium with [2-<sup>13</sup>C]pyruvate data4 VCaP medium with [1,6-<sup>13</sup>C<sub>2</sub>]glucose data5 VCaP medium with [U-<sup>13</sup>C<sub>4</sub>]aspartate -glucose +pyruvate data6 VCaP medium with [5-<sup>13</sup>C]glutamine data7 VCaP medium with [2-<sup>13</sup>C]pyruvate -glucose +aspartate data8 VCaP medium with [5-<sup>13</sup>C]glutamine data9 VCaP medium with [5-<sup>13</sup>C]glutamine data10 VCaP medium with [5-<sup>13</sup>C]glutamine data11 LNCaP and VCaP medium with and without zinc(II) data12 LNCaP and VCaP medium with and without zinc(II) data13 LNCaP and VCaP medium with and without zinc(II) data14 LNCaP medium with [U-<sup>13</sup>C<sub>4</sub>]aspartate -glucose +pyruvate data15 LNCaP medium with [5-<sup>13</sup>C]glutamine data16 LNCaP medium with [2-<sup>13</sup>C]pyruvate data17 LNCaP medium with [5-<sup>13</sup>C]glutamine data18 VCaP medium with [1,6-<sup>13</sup>C<sub>2</sub>]glucose data19 VCaP medium with [1,6-<sup>13</sup>C<sub>2</sub>]glucose data20 VCaP medium with [2-<sup>13</sup>C]pyruvate data21 LNCaP medium with [2-<sup>13</sup>C]pyruvate data22 LNCaP medium with [2-<sup>13</sup>C]pyruvate +citr. Spiking data23 LNCaP medium with [5-<sup>13</sup>C]glutamine data24 LNCaP medium with [5-<sup>13</sup>C]glutamine data25 LNCaP medium with [2-<sup>13</sup>C]pyruvate data26 VCaP medium with [2-<sup>13</sup>C]pyruvate data27 VCaP medium with [2-<sup>13</sup>C]pyruvate -glucose +aspartate data28 VCaP medium with [U-<sup>13</sup>C<sub>4</sub>]aspartate -glucose +pyruvate data29 LNCaP medium with [2-<sup>13</sup>C]pyruvate data30 LNCaP medium with [2-<sup>13</sup>C]pyruvate data31 LNCaP medium with [2-<sup>13</sup>C]pyruvate data32 VCaP medium with [2-<sup>13</sup>C]pyruvate -glucose +aspartate data33 VCaP medium with [U-<sup>13</sup>C<sub>4</sub>]aspartate -glucose +pyruvate data34 VCaP medium with [U-<sup>13</sup>C<sub>4</sub>]aspartate -glucose +pyruvate data35 LNCaP medium with [U-<sup>13</sup>C<sub>4</sub>]aspartate data36 VCaP medium with [U-<sup>13</sup>C<sub>4</sub>]aspartate -glucose +pyruvate data37 LNCaP medium with [5-<sup>13</sup>C]glutamine + citr. spiking
DOI: 10.5281/zenodo.5752952
title: Datasets: Carbon sources and pathways for citrate secreted by human prostate cancer cells determined by NMR tracing and metabolic modeling

description: Zipped NMR datasets: data1 LNCaP medium with [U-<sup>13</sup>C<sub>4</sub>]aspartate data2 LNCaP medium with [1,6-<sup>13</sup>C<sub>2</sub>]glucose data3 LNCaP medium with [2-<sup>13</sup>C]pyruvate data4 VCaP medium with [1,6-<sup>13</sup>C<sub>2</sub>]glucose data5 VCaP medium with [U-<sup>13</sup>C<sub>4</sub>]aspartate -glucose +pyruvate data6 VCaP medium with [5-<sup>13</sup>C]glutamine data7 VCaP medium with [2-<sup>13</sup>C]pyruvate -glucose +aspartate data8 VCaP medium with [5-<sup>13</sup>C]glutamine data9 VCaP medium with [5-<sup>13</sup>C]glutamine data10 VCaP medium with [5-<sup>13</sup>C]glutamine data11 LNCaP and VCaP medium with and without zinc(II) data12 LNCaP and VCaP medium with and without zinc(II) data13 LNCaP and VCaP medium with and without zinc(II) data14 LNCaP medium with [U-<sup>13</sup>C<sub>4</sub>]aspartate -glucose +pyruvate data15 LNCaP medium with [5-<sup>13</sup>C]glutamine data16 LNCaP medium with [2-<sup>13</sup>C]pyruvate data17 LNCaP medium with [5-<sup>13</sup>C]glutamine data18 VCaP medium with [1,6-<sup>13</sup>C<sub>2</sub>]glucose data19 VCaP medium with [1,6-<sup>13</sup>C<sub>2</sub>]glucose data20 VCaP medium with [2-<sup>13</sup>C]pyruvate data21 LNCaP medium with [2-<sup>13</sup>C]pyruvate data22 LNCaP medium with [2-<sup>13</sup>C]pyruvate +citr. Spiking data23 LNCaP medium with [5-<sup>13</sup>C]glutamine data24 LNCaP medium with [5-<sup>13</sup>C]glutamine data25 LNCaP medium with [2-<sup>13</sup>C]pyruvate data26 VCaP medium with [2-<sup>13</sup>C]pyruvate data27 VCaP medium with [2-<sup>13</sup>C]pyruvate -glucose +aspartate data28 VCaP medium with [U-<sup>13</sup>C<sub>4</sub>]aspartate -glucose +pyruvate data29 LNCaP medium with [2-<sup>13</sup>C]pyruvate data30 LNCaP medium with [2-<sup>13</sup>C]pyruvate data31 LNCaP medium with [2-<sup>13</sup>C]pyruvate data32 VCaP medium with [2-<sup>13</sup>C]pyruvate -glucose +aspartate data33 VCaP medium with [U-<sup>13</sup>C<sub>4</sub>]aspartate -glucose +pyruvate data34 VCaP medium with [U-<sup>13</sup>C<sub>4</sub>]aspartate -glucose +pyruvate data35 LNCaP medium with [U-<sup>13</sup>C<sub>4</sub>]aspartate data36 VCaP medium with [U-<sup>13</sup>C<sub>4</sub>]aspartate -glucose +pyruvate data37 LNCaP medium with [5-<sup>13</sup>C]glutamine + citr. spiking
DOI: 10.25721/qzc3-hq79
title: Information sur Monsieur Martin Cayla
DOI: 10.5281/zenodo.5760322
title: Dataset with SNP genotypes for local goat breeds of Mongolia (PLINK format)

description: SNP genotyping was performed with Goat 50K BeadChip (Illumina Inc., USA) containing ~60 000 SNP. Quality control was performed by setting a cutoff of 0.5 for the GenCall and GenTrain scores. SNP dataset was filtered to remove poorly genotyped individuals, loci genotyped in &lt;90% of individuals and rare alleles using PLINK 1.9 (Chang et al. 2015) with geno 0.1 --mind 0.1 --maf 0.05 plink parameters. To ensure that our analysis would not be affected by the presence of SNP in strong linkage disequilibrium we also filtered data with --indep-pairwaise 50 5 0.2 PLINK filter.
description: Funding: This work has been supported by the grants the Russian Science Foundation, RSF 19-76-20061.
DOI: 10.5281/zenodo.5760321
title: Dataset with SNP genotypes for local goat breeds of Mongolia (PLINK format)

description: SNP genotyping was performed with Goat 50K BeadChip (Illumina Inc., USA) containing ~60 000 SNP. Quality control was performed by setting a cutoff of 0.5 for the GenCall and GenTrain scores. SNP dataset was filtered to remove poorly genotyped individuals, loci genotyped in &lt;90% of individuals and rare alleles using PLINK 1.9 (Chang et al. 2015) with geno 0.1 --mind 0.1 --maf 0.05 plink parameters. To ensure that our analysis would not be affected by the presence of SNP in strong linkage disequilibrium we also filtered data with --indep-pairwaise 50 5 0.2 PLINK filter.
description: Funding: This work has been supported by the grants the Russian Science Foundation, RSF 19-76-20061.
DOI: 10.48420/17104427
title: Misc Monthly Weather Review files - Sean Potter

description: Excel spreadsheet used to tabulate the total number of pages published each volumeExcel spreadsheet used to determine for which issues Cleveland Abbe had been listed as editor<br>Excel spreadsheet used to determine which issues included some version of the "Notes by the Editor" department<br>Word document with excerpts from issues of <i>Weather Bureau Topics and Personnel</i> / <i>Weather Bureau Topics</i> / <i>Topics </i>containing mention of MWR<br>
DOI: 10.48420/17104427.v1
title: Misc Monthly Weather Review files - Sean Potter

description: Excel spreadsheet used to tabulate the total number of pages published each volumeExcel spreadsheet used to determine for which issues Cleveland Abbe had been listed as editor<br>Excel spreadsheet used to determine which issues included some version of the "Notes by the Editor" department<br>Word document with excerpts from issues of <i>Weather Bureau Topics and Personnel</i> / <i>Weather Bureau Topics</i> / <i>Topics </i>containing mention of MWR<br>
DOI: 10.5525/gla.researchdata.1207
title: Curious Travellers

description: Data for 'Curious Travellers' project (https://editions.curioustravellers.ac.uk/). Dr Mary-Ann Constantine (Principal Investigator) and Professor Nigel Leask (Co-investigator) Editors/Transcribers: Dr Ffion Mair Jones Dr Elizabeth Edwards Dr Alex Deans Dr Vivien Estelle Williams Software development: Dr Luca Guariento
DOI: 10.6084/m9.figshare.17128733
title: 20181105_bonnotte_Proteomic_Resultsfordeposition.xlsx

description: Mass spectrometry was used to identify proteins overproduced by CD14+ Human Monocytes Derived Suppressive Cells (CD14+HuMoSC) as compared to human monocytes.
DOI: 10.6084/m9.figshare.17128733.v1
title: 20181105_bonnotte_Proteomic_Resultsfordeposition.xlsx

description: Mass spectrometry was used to identify proteins overproduced by CD14+ Human Monocytes Derived Suppressive Cells (CD14+HuMoSC) as compared to human monocytes.
DOI: 10.23708/k95okx
title: Dataset of flood event in Houay Pano catchment, Laos on June 16th, 2014

description: This dataset has been collected thanks to the long-term partnership with Department of Agricultural Land Management (DALaM), Lao PDR, which granted the permission for field access, and to the financial, scientific, technical, and/or logistical support of the Multiscale TROPIcal CatchmentS (SNO M-TROPICS; https://mtropics.obs-mip.fr/) critical zone observatory (previously MSEC). We investigated how overland flow associated to a flood event impacts dissolved organic carbon (DOC) concentration, its optical characteristics and aquatic bacteria community structure in Houay Pano stream, Laos. We collected stream water in upstream and downstream at different stages of the storm flow event to assess the change in DOC concentration and composition and bacterial community. Here we present a series of environmental data, hydrological data and diversity data from the water samples. The authors acknowledge the financial support of the Institut de Recherche pour le Développement (IRD), the French National Research Agency (TecItEasy project ANR-13-AGRO-0007; https://anr.fr/en/), and the USTH (https://www.usth.edu.vn/en/) in Vietnam.
DOI: 10.6084/m9.figshare.17128758.v1
title: Table S2: A Late Triassic vegetation record from the Huangshanjie Formation, Junggar Basin, China: possible evidence for the Carnian Pluvial Episode

description: Botanical affinites of identified pollen and spores in this study
DOI: 10.6084/m9.figshare.17128761
title: Table S3: A Late Triassic vegetation record from the Huangshanjie Formation, Junggar Basin, China: possible evidence for the Carnian Pluvial Episode

description: Hygrophytic and xerophytic pollen and spore genera in this study
DOI: 10.6084/m9.figshare.17128758
title: Table S2: A Late Triassic vegetation record from the Huangshanjie Formation, Junggar Basin, China: possible evidence for the Carnian Pluvial Episode

description: Botanical affinites of identified pollen and spores in this study
DOI: 10.6084/m9.figshare.17128764.v1
title: Table S1: A Late Triassic vegetation record from the Huangshanjie Formation, Junggar Basin, China: possible evidence for the Carnian Pluvial Episode

description: Raw count data of pollen and spores from the Huangshanjie Formation in the Dalongkou Section
DOI: 10.6084/m9.figshare.17128761.v1
title: Table S3: A Late Triassic vegetation record from the Huangshanjie Formation, Junggar Basin, China: possible evidence for the Carnian Pluvial Episode

description: Hygrophytic and xerophytic pollen and spore genera in this study
DOI: 10.6084/m9.figshare.17128764
title: Table S1: A Late Triassic vegetation record from the Huangshanjie Formation, Junggar Basin, China: possible evidence for the Carnian Pluvial Episode

description: Raw count data of pollen and spores from the Huangshanjie Formation in the Dalongkou Section
DOI: 10.15129/2d75a4a8-83f1-4640-810d-47d963662a33
title: Data for: "Employing constant rate filtration to assess active pharmaceutical ingredient (API) washing efficiency"

description: This data is related to the journal paper, “Employing constant rate filtration to assess active pharmaceutical ingredient (API) washing efficiency”. The data folder contains all the data used for this work. The folder named “Constant_rate_work_Exp_DataSet” contains all the raw experimental data that was obtained in the labs for all the experiments performed for this work. The folder named “Data_Analysis” contains analysis performed for all the experiments and also contains python script file used for some of data analysis work. Folder named “DOE” contains the files on Modde software used for DOE analysis for this work. Folder named “Solubility_Blue_Dye” contains experimental data for blue dye which is related to section 3.2 of the paper. Folder named “Mastersizer_Analysis” contains data obtained from particle size distribution analysis which is related to section 4.3 of the paper. Folder labelled “NMR_Analysis” contains all the data for NMR analysis that was performed on all the washed API cakes obtains from the experiments.
DOI: 10.6084/m9.figshare.17128772
title: Supplementary Material for: Evolution of Survival Impact of Molecular Target Agents in Patients with Advanced Hepatocellular Carcinoma

description: <b><i>Background and Aims:</i></b> The prognosis of patients with advanced hepatocellular carcinoma (HCC) is expected to improve as multiple molecular target agents (MTAs) are now available. However, the impact of the availability of sequential MTAs has not been fully verified yet. <b><i>Approach and Results:</i></b> We retrospectively collected the data on the whole clinical course of 877 patients who received any MTAs as first-line systemic therapy for advanced HCC between June 2009 and March 2019. The study population was divided into 3 groups according to the date of first-line MTA administration (period 1: 2009–2012, <i>n</i> = 267; period 2: 2013–2016, <i>n</i> = 352; period 3: 2017–2019, <i>n</i> = 258). Then, we compared the number of MTAs used, overall survival (OS), and MTA treatment duration among the 3 groups. Analysis was also performed separately for advanced-stage and nonadvanced-stage HCC. The proportion of patients who received multiple MTAs was remarkably increased over time (1.1%, 10.2%, and 42.6% in periods 1, 2, and 3, respectively, <i>p</i> &lt; 0.001). The median OS times were prolonged to 10.4, 11.3, and 15.2 months in periods 1, 2, and 3, respectively (<i>p</i> = 0.016). Similarly, the MTA treatment durations were extended (2.7, 3.2, and 6.6 months in periods 1, 2, and 3, respectively; <i>p</i> &lt; 0.001). We confirmed that the correlation between OS and MTA treatment duration was strengthened (period 1: 0.395, period 2: 0.505, and period 3: 0.667). All these trends were pronounced in the patients with advanced-stage HCC but limited in the patients with nonadvanced-stage HCC. <b><i>Conclusions:</i></b> The availability of multiple MTAs had steadily improved the prognosis of patients with advanced HCC patients, particularly advanced-stage HCC patients.
DOI: 10.6084/m9.figshare.17128772.v1
title: Supplementary Material for: Evolution of Survival Impact of Molecular Target Agents in Patients with Advanced Hepatocellular Carcinoma

description: <b><i>Background and Aims:</i></b> The prognosis of patients with advanced hepatocellular carcinoma (HCC) is expected to improve as multiple molecular target agents (MTAs) are now available. However, the impact of the availability of sequential MTAs has not been fully verified yet. <b><i>Approach and Results:</i></b> We retrospectively collected the data on the whole clinical course of 877 patients who received any MTAs as first-line systemic therapy for advanced HCC between June 2009 and March 2019. The study population was divided into 3 groups according to the date of first-line MTA administration (period 1: 2009–2012, <i>n</i> = 267; period 2: 2013–2016, <i>n</i> = 352; period 3: 2017–2019, <i>n</i> = 258). Then, we compared the number of MTAs used, overall survival (OS), and MTA treatment duration among the 3 groups. Analysis was also performed separately for advanced-stage and nonadvanced-stage HCC. The proportion of patients who received multiple MTAs was remarkably increased over time (1.1%, 10.2%, and 42.6% in periods 1, 2, and 3, respectively, <i>p</i> &lt; 0.001). The median OS times were prolonged to 10.4, 11.3, and 15.2 months in periods 1, 2, and 3, respectively (<i>p</i> = 0.016). Similarly, the MTA treatment durations were extended (2.7, 3.2, and 6.6 months in periods 1, 2, and 3, respectively; <i>p</i> &lt; 0.001). We confirmed that the correlation between OS and MTA treatment duration was strengthened (period 1: 0.395, period 2: 0.505, and period 3: 0.667). All these trends were pronounced in the patients with advanced-stage HCC but limited in the patients with nonadvanced-stage HCC. <b><i>Conclusions:</i></b> The availability of multiple MTAs had steadily improved the prognosis of patients with advanced HCC patients, particularly advanced-stage HCC patients.
DOI: 10.5281/zenodo.4637192
title: Designing three-dimensional flat bands in nodal-line semimetals

description: Electrons with large kinetic energy have a superconducting instability for infinitesimal attractive interactions. Quenching the kinetic energy and creating a flat band renders an infinitesimal repulsive interaction the relevant perturbation. Thus, flat band systems are an ideal platform to study the competition of superconductivity and magnetism and their possible coexistence. Recent advances in the field of twisted bilayer graphene highlight this in the context of two-dimensional materials. Two dimensions, however, put severe restrictions on the stability of the low-temperature phases due to enhanced fluctuations. Only three-dimensional flat bands can solve the conundrum of combining the exotic flat-band phases with stable order existing at high temperatures. Here, we present a way to generate such flat bands through strain engineering in topological nodal-line semimetals. We present analytical and numerical evidence for this scenario and study the competition of the arising superconducting and magnetic orders as a function of externally controlled parameters. We show that the order parameter is rigid because the quantum geometry of the Bloch wave functions leads to a large superfluid stiffness. Using density-functional theory and numerical tight-binding calculations we further apply our theory to strained rhombohedral graphite and CaAgP materials. The provided repository contains all code and data to reproduce the results of this study.
DOI: 10.5281/zenodo.3993298
title: Designing three-dimensional flat bands in nodal-line semimetals

description: Electrons with large kinetic energy have a superconducting instability for infinitesimal attractive interactions. Quenching the kinetic energy and creating a flat band renders an infinitesimal repulsive interaction the relevant perturbation. Thus, flat band systems are an ideal platform to study the competition of superconductivity and magnetism and their possible coexistence. Recent advances in the field of twisted bilayer graphene highlight this in the context of two-dimensional materials. Two dimensions, however, put severe restrictions on the stability of the low-temperature phases due to enhanced fluctuations. Only three-dimensional flat bands can solve the conundrum of combining the exotic flat-band phases with stable order existing at high temperatures. Here, we present a way to generate such flat bands through strain engineering in topological nodal-line semimetals. We present analytical and numerical evidence for this scenario and study the competition of the arising superconducting and magnetic orders as a function of externally controlled parameters. We show that the order parameter is rigid because the quantum geometry of the Bloch wave functions leads to a large superfluid stiffness. Using density-functional theory and numerical tight-binding calculations we further apply our theory to strained rhombohedral graphite and CaAgP materials. The provided repository contains all code and data to reproduce the results of this study.
DOI: 10.26036/cnp0001505
title: Genome and transcriptome sequencing, assembly and analysis of Phymorhynchus buccinoides

description: Genome and transcriptome sequencing, assembly and analysis of Phymorhynchus buccinoides
DOI: 10.17632/z7rgf54jd6.1
title: Natri et al. 2021, AJHG, Supplementary File 4, methylQTL nominal statistics

description: Natri et al. 2021, AJHG, Supplementary File 4. Nominal test statistics for all SNPs tested for the permutation-significant methylQTLs.
DOI: 10.5281/zenodo.5760897
title: Trialstreamer data

description: Trialstreamer annotated collection of RCTs. This respository contains baseline files (large), and subsequent updates (daily for PubMed, weekly for ICTRP).
DOI: 10.17632/p3kyx6j42f.1
title: Aqueous humor flow under glaucoma

description: The origin of glaucoma is under debate. However, it is well known that glaucoma is produced by an imbalance in the production and drainage of aqueous humour. The conventional drainage system is composed of the trabecular meshwork (at the anterior chamber angle), the Schlemm Canal, and the collector channels. Alterations of any of these components could increase the aqueous humour flow resistance. The hypothesis of this work is that the position of the collector channels has a strong influence on the drainage resistance. Numerical simulations of biologically realistic models were performed, using OpenFOAM. The models were reconstructed from OCT (Optical Coherence Tomography). An inlet flow is imposed (considering a normal physiological value) and the trabecular meshwork is defined as a homogenous media...