cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ayn7hs
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ictalurus furcatus",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032348-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30243790
title: hPancreas datasets

description: hPancreas datasets
DOI: 10.6084/m9.figshare.30243790.v2
title: hPancreas datasets

description: hPancreas datasets
DOI: 10.6084/m9.figshare.30243790.v1
title: hPancreas datasets

description: hPancreas datasets
DOI: 10.15468/dl.mgteg6
title: Occurrence Download

description: A dataset containing 34333 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ictalurus furcatus",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 34333 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032349-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17231418
title: Impact of volcanic volatile fluxes on Mesozoic terrestrial biotas in northern China

description: Supplementary tables
DOI: 10.5281/zenodo.17231417
title: Impact of volcanic volatile fluxes on Mesozoic terrestrial biotas in northern China

description: Supplementary tables
DOI: 10.6084/m9.figshare.30050263
title: The complete mitochondrial genome of <i>Leptomastidea bifasciata</i> (Hymenoptera: Chalcidoidea: Encyrtidae) and phylogenetic analysis

description: <i>Leptomastidea</i> (Hymenoptera, Encyrtidae) are parasitoids of agricultural/forestry mealybug pests. This study first sequences and annotates <i>L. bifasciata</i>’s complete mitochondrial genome (15,768 bp), which contains 13 PCGs, 22 tRNAs, 2 rRNAs. All 13 PCGs start with ATN (ATT, ATG, ATA); most end with TAA, except ND1 (TAG). Phylogenetic analysis shows <i>L. bifasciata</i> is sister to <i>Anagyrus</i> spp.
DOI: 10.6084/m9.figshare.30050263.v1
title: The complete mitochondrial genome of <i>Leptomastidea bifasciata</i> (Hymenoptera: Chalcidoidea: Encyrtidae) and phylogenetic analysis

description: <i>Leptomastidea</i> (Hymenoptera, Encyrtidae) are parasitoids of agricultural/forestry mealybug pests. This study first sequences and annotates <i>L. bifasciata</i>’s complete mitochondrial genome (15,768 bp), which contains 13 PCGs, 22 tRNAs, 2 rRNAs. All 13 PCGs start with ATN (ATT, ATG, ATA); most end with TAA, except ND1 (TAG). Phylogenetic analysis shows <i>L. bifasciata</i> is sister to <i>Anagyrus</i> spp.
DOI: 10.6084/m9.figshare.30136573.v1
title: The complete mitochondrial genome of smooth spooner crab, <i>Etisus laevimanus</i> Randall, 1840 (Crustacea: Decapoda: Xanthoidea) from the East Sea, Korea

description: The mitogenome of the smooth spooner crab <i>Etisus laevimanus</i> Randall, 1840, was sequenced completely for the first time. The total <i>E. laevimanus</i> mitogenome length is 15,714 bp, containing 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, and one non-coding region. The gene order is consistent with that in other xanthoid species. The base composition is 32.9% A, 20.6% C, 11.6% G, and 34.9% T, with a G–C content of 32.1%. The phylogenetic analysis using the xanthoid mitogenome showed that the genus <i>Etisus</i> may not be monophyletic, as suggested by a few previous studies.
DOI: 10.6084/m9.figshare.30136573
title: The complete mitochondrial genome of smooth spooner crab, <i>Etisus laevimanus</i> Randall, 1840 (Crustacea: Decapoda: Xanthoidea) from the East Sea, Korea

description: The mitogenome of the smooth spooner crab <i>Etisus laevimanus</i> Randall, 1840, was sequenced completely for the first time. The total <i>E. laevimanus</i> mitogenome length is 15,714 bp, containing 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, and one non-coding region. The gene order is consistent with that in other xanthoid species. The base composition is 32.9% A, 20.6% C, 11.6% G, and 34.9% T, with a G–C content of 32.1%. The phylogenetic analysis using the xanthoid mitogenome showed that the genus <i>Etisus</i> may not be monophyletic, as suggested by a few previous studies.
DOI: 10.6084/m9.figshare.30120521
title: Characterization and phylogenetic analysis of the mitochondrial genomes of four <i>Xanthoparmelia</i> (Vain.) Hale lichen fungi

description: In this study, the complete mitochondrial genomes of four <i>Xanthoparmelia</i> species (<i>X. chlorochroa</i>, <i>X. coreana</i>, <i>X. pulvinaris</i>, and <i>X. stenophylla</i>) were sequenced, assembled and annotated. The four mitochondrial genomes are all composed of circular DNA molecules, with a total length ranging from 81,294 bp to 88,296 bp, containing 41–42 genes (14 protein-coding genes (PCGs), 2 rRNA genes, and 25–26 tRNA genes), the GC content is 30%–30.7% and the AT skew is positive. Phylogenetic analysis based on 14 PCGs and rRNA genes revealed that the four Xanthoparmelia species form a well-supported clade within Parmeliaceae.
DOI: 10.6084/m9.figshare.30120521.v1
title: Characterization and phylogenetic analysis of the mitochondrial genomes of four <i>Xanthoparmelia</i> (Vain.) Hale lichen fungi

description: In this study, the complete mitochondrial genomes of four <i>Xanthoparmelia</i> species (<i>X. chlorochroa</i>, <i>X. coreana</i>, <i>X. pulvinaris</i>, and <i>X. stenophylla</i>) were sequenced, assembled and annotated. The four mitochondrial genomes are all composed of circular DNA molecules, with a total length ranging from 81,294 bp to 88,296 bp, containing 41–42 genes (14 protein-coding genes (PCGs), 2 rRNA genes, and 25–26 tRNA genes), the GC content is 30%–30.7% and the AT skew is positive. Phylogenetic analysis based on 14 PCGs and rRNA genes revealed that the four Xanthoparmelia species form a well-supported clade within Parmeliaceae.
DOI: 10.6084/m9.figshare.30120523
title: Characterization and phylogenetic analysis of the complete mitochondrial genome of <i>Benthodytes gosarsi</i> Gebruk 2008 (echinodermata: holothuroidea: elasipodida) from deep-sea environments

description: Deep-sea organisms exhibit remarkable adaptations to extreme environmental conditions. It is important to elucidate the survival mechanisms of deep-sea life by exploring their genetic characteristics and origins. This study reports the complete mitochondrial genome of a deep-sea holothurian species (<i>Benthodytes gosarsi</i>). The mitochondrial genome of <i>B. gosarsi</i> is 17,133 bp in length and encodes 13 PCGs, 2 rRNAs, and 22 tRNAs. The heavy strand of <i>B. gosarsi</i> mtDNA consists of 31.62% A, 13.30% G, 37.38% T, and 17.70% C bases. Phylogenetic analysis with 18 mitogenomes from five sea cucumber orders determined the phylogenetic position of <i>B. gosarsi</i> within Holothuroidea. This study provides new insights into the genetic structure and phylogenetic relationships of <i>B. gosarsi</i>, contributing to a better understanding of deep-sea adaptation in holothurians.
DOI: 10.6084/m9.figshare.30120523.v1
title: Characterization and phylogenetic analysis of the complete mitochondrial genome of <i>Benthodytes gosarsi</i> Gebruk 2008 (echinodermata: holothuroidea: elasipodida) from deep-sea environments

description: Deep-sea organisms exhibit remarkable adaptations to extreme environmental conditions. It is important to elucidate the survival mechanisms of deep-sea life by exploring their genetic characteristics and origins. This study reports the complete mitochondrial genome of a deep-sea holothurian species (<i>Benthodytes gosarsi</i>). The mitochondrial genome of <i>B. gosarsi</i> is 17,133 bp in length and encodes 13 PCGs, 2 rRNAs, and 22 tRNAs. The heavy strand of <i>B. gosarsi</i> mtDNA consists of 31.62% A, 13.30% G, 37.38% T, and 17.70% C bases. Phylogenetic analysis with 18 mitogenomes from five sea cucumber orders determined the phylogenetic position of <i>B. gosarsi</i> within Holothuroidea. This study provides new insights into the genetic structure and phylogenetic relationships of <i>B. gosarsi</i>, contributing to a better understanding of deep-sea adaptation in holothurians.
DOI: 10.6084/m9.figshare.30031390
title: The complete chloroplast genome of <i>Dioscorea tenuipes</i> Franch. & Sav. and its phylogenetic analysis

description: Here, we present the first complete chloroplast genome of <i>D. tenuipes</i> (154,018 bp), which exhibits a typical quadripartite structure, including an LSC (83,966 bp), SSC (18,910 bp), and two IRs (25,571 bp each). A total of 133 genes were annotated, with 114 unique genes and 19 duplicated in the IRs. .Phylogenetic analyses based on complete chloroplast genomes of 13 <i>Stenophora</i> species strongly supported <i>D. tenuipes</i> as sister to <i>D. gracillima</i> (BS = 100%, PP = 1.0), challenging earlier studies that suggested a sister relationship with <i>D. tokoro</i> based on partial plastid sequences. Overall, this study provides a critical genomic resource for advancing research on the taxonomy, evolution, and medicinal breeding of <i>D. tenuipes</i>.
DOI: 10.6084/m9.figshare.30031390.v1
title: The complete chloroplast genome of <i>Dioscorea tenuipes</i> Franch. & Sav. and its phylogenetic analysis

description: Here, we present the first complete chloroplast genome of <i>D. tenuipes</i> (154,018 bp), which exhibits a typical quadripartite structure, including an LSC (83,966 bp), SSC (18,910 bp), and two IRs (25,571 bp each). A total of 133 genes were annotated, with 114 unique genes and 19 duplicated in the IRs. .Phylogenetic analyses based on complete chloroplast genomes of 13 <i>Stenophora</i> species strongly supported <i>D. tenuipes</i> as sister to <i>D. gracillima</i> (BS = 100%, PP = 1.0), challenging earlier studies that suggested a sister relationship with <i>D. tokoro</i> based on partial plastid sequences. Overall, this study provides a critical genomic resource for advancing research on the taxonomy, evolution, and medicinal breeding of <i>D. tenuipes</i>.
DOI: 10.6084/m9.figshare.30068059
title: Phylogenomic insights from the complete chloroplast genome of <i>Phyllostachys lithophila</i> (poaceae: bambusoideae: arundinarieae) in Taiwan

description: <i>Phyllostachys lithophila</i> Hayata 1916 is a unique bamboo species endemic to Taiwan, typically found at elevations ranging from 500 to 1,500 meters. This study provides a detailed analysis of the complete chloroplast genome of <i>P. lithophila</i> for the first time. The genome spans 139,664 base pairs (bp) and consists of a large single-copy (LSC) region of 83,192 bp, a small single-copy (SSC) region of 12,869 bp, and two inverted repeat (IR) regions, each 21,798 bp in length. The plastid genome encodes a total of 129 genes, including 83 protein-coding genes, 38 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. Phylogenetic analysis confirms that <i>P. lithophila</i> shares a closer phylogenetic relationship with species of <i>Phyllostachys</i> within the Arundinarieae tribe, while being phylogenetically distinct from the morphologically similar <i>P. makinoi</i>.
DOI: 10.6084/m9.figshare.30068059.v1
title: Phylogenomic insights from the complete chloroplast genome of <i>Phyllostachys lithophila</i> (poaceae: bambusoideae: arundinarieae) in Taiwan

description: <i>Phyllostachys lithophila</i> Hayata 1916 is a unique bamboo species endemic to Taiwan, typically found at elevations ranging from 500 to 1,500 meters. This study provides a detailed analysis of the complete chloroplast genome of <i>P. lithophila</i> for the first time. The genome spans 139,664 base pairs (bp) and consists of a large single-copy (LSC) region of 83,192 bp, a small single-copy (SSC) region of 12,869 bp, and two inverted repeat (IR) regions, each 21,798 bp in length. The plastid genome encodes a total of 129 genes, including 83 protein-coding genes, 38 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. Phylogenetic analysis confirms that <i>P. lithophila</i> shares a closer phylogenetic relationship with species of <i>Phyllostachys</i> within the Arundinarieae tribe, while being phylogenetically distinct from the morphologically similar <i>P. makinoi</i>.
DOI: 10.6084/m9.figshare.30075231
title: Complete mitochondrial genome of an abyssal cusk-eel <i>Barathrites iris</i> (Ophidiiformes: Ophidiidae)

description: <i>Barathrites iris</i> Zugmayer, 1911 is an abyssal fish species inhabiting depths exceeding 3,000 m. We successfully sequenced and characterized the complete mitochondrial genome of <i>B. iris</i>, which represents a closed circular molecule of 16,646 bp with a GC content of 48.98%. Phylogenetic analysis of Ophidiiformes based on whole mitochondrial genome sequences demonstrated that <i>B. iris</i> forms a sister group with <i>Penopus microphthalmus</i> while supporting the polyphyly of Bythitidae as well as the paraphyletic status of Ophidioidei. As the first report of a complete mitochondrial genome for <i>B. iris</i>, this study provides valuable genomic resources for investigating deep-sea adaptation mechanisms in Ophidiiformes and contributes to our understanding of evolutionary patterns in abyssal teleost fishes.
DOI: 10.6084/m9.figshare.30075231.v1
title: Complete mitochondrial genome of an abyssal cusk-eel <i>Barathrites iris</i> (Ophidiiformes: Ophidiidae)

description: <i>Barathrites iris</i> Zugmayer, 1911 is an abyssal fish species inhabiting depths exceeding 3,000 m. We successfully sequenced and characterized the complete mitochondrial genome of <i>B. iris</i>, which represents a closed circular molecule of 16,646 bp with a GC content of 48.98%. Phylogenetic analysis of Ophidiiformes based on whole mitochondrial genome sequences demonstrated that <i>B. iris</i> forms a sister group with <i>Penopus microphthalmus</i> while supporting the polyphyly of Bythitidae as well as the paraphyletic status of Ophidioidei. As the first report of a complete mitochondrial genome for <i>B. iris</i>, this study provides valuable genomic resources for investigating deep-sea adaptation mechanisms in Ophidiiformes and contributes to our understanding of evolutionary patterns in abyssal teleost fishes.
DOI: 10.6084/m9.figshare.30042423
title: Chloroplast genome characteristics and phylogenetic analysis of <i>Scrophularia marilandica</i> Linnaeus (Scrophulariaceae)

description: <i>Scrophularia marilandica</i> Linnaeus 1753 is a herbaceous perennial medicinal plant of the family Scrophulariaceae, native throughout eastern and central North America. In this study, the first complete chloroplast genome of <i>S. marilandica</i> was reported and phylogenetic analysis was conducted with other 11 species from Scrophulariaceae. The chloroplast genome was 152,414 bp with 132 genes and includes a large single-copy (LSC) region (83,583 bp), a small single-copy (SSC) region (17,925 bp), and a pair of inverted repeat (IRs) regions (25,453 bp). The chloroplast genome reported here will be beneficial for its interspecific identification and evolutionary studies of <i>Scrophularia.</i>
DOI: 10.6084/m9.figshare.30042423.v1
title: Chloroplast genome characteristics and phylogenetic analysis of <i>Scrophularia marilandica</i> Linnaeus (Scrophulariaceae)

description: <i>Scrophularia marilandica</i> Linnaeus 1753 is a herbaceous perennial medicinal plant of the family Scrophulariaceae, native throughout eastern and central North America. In this study, the first complete chloroplast genome of <i>S. marilandica</i> was reported and phylogenetic analysis was conducted with other 11 species from Scrophulariaceae. The chloroplast genome was 152,414 bp with 132 genes and includes a large single-copy (LSC) region (83,583 bp), a small single-copy (SSC) region (17,925 bp), and a pair of inverted repeat (IRs) regions (25,453 bp). The chloroplast genome reported here will be beneficial for its interspecific identification and evolutionary studies of <i>Scrophularia.</i>
DOI: 10.15468/dl.fvzcfa
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pangasius hypophthalmus",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032350-250920141307145/datasets/export for details.
DOI: 10.25919/yghr-d040
title: Specimen images accessed on 30-9-2025
DOI: 10.6084/m9.figshare.30026368
title: Datasets for Model Training, Validation, and Testing, Together with Spectral Measurements and Optical Characterization of Eight Devices

description: A dataset comprising 640 spectra of thermally stabilized DKSs is partitioned into training and validation sets in a 4:1 ratio. The ground-truth soliton number labels required for semi-supervised model training are first obtained through FFT-GA-based spectral analysis. These labeled datasets are then used to train a hybrid CNN-TMHA model, enabling efficient extraction of representative local and global spectral features. Finally, a testing dataset of 230 real-time acquired soliton spectra is fed into the trained model to enable rapid and accurate classification of distinct DKS states.<br>Based on the spectral measurements and optical characterization results of the eight devices, the following observations can be made:(1) As the coupling gap increases, the resonance modes progressively transition from the over-coupled regime to the critically coupled regime, and eventually to the under-coupled regime. (2) The overall symmetry of the dispersion curves about the central mode confirms that the dispersion landscape is only weakly perturbed.
DOI: 10.6084/m9.figshare.30026368.v2
title: Datasets for Model Training, Validation, and Testing, Together with Spectral Measurements and Optical Characterization of Eight Devices

description: A dataset comprising 640 spectra of thermally stabilized DKSs is partitioned into training and validation sets in a 4:1 ratio. The ground-truth soliton number labels required for semi-supervised model training are first obtained through FFT-GA-based spectral analysis. These labeled datasets are then used to train a hybrid CNN-TMHA model, enabling efficient extraction of representative local and global spectral features. Finally, a testing dataset of 230 real-time acquired soliton spectra is fed into the trained model to enable rapid and accurate classification of distinct DKS states.<br>Based on the spectral measurements and optical characterization results of the eight devices, the following observations can be made:(1) As the coupling gap increases, the resonance modes progressively transition from the over-coupled regime to the critically coupled regime, and eventually to the under-coupled regime. (2) The overall symmetry of the dispersion curves about the central mode confirms that the dispersion landscape is only weakly perturbed.
DOI: 10.6084/m9.figshare.30026368.v1
title: Datasets for Model Training, Validation, and Testing, Together with Spectral Measurements and Optical Characterization of Eight Devices

description: A dataset comprising 640 spectra of thermally stabilized DKSs is partitioned into training and validation sets in a 4:1 ratio. The ground-truth soliton number labels required for semi-supervised model training are first obtained through FFT-GA-based spectral analysis. These labeled datasets are then used to train a hybrid CNN-TMHA model, enabling efficient extraction of representative local and global spectral features. Finally, a testing dataset of 230 real-time acquired soliton spectra is fed into the trained model to enable rapid and accurate classification of distinct DKS states.<br>Based on the spectral measurements and optical characterization results of the eight devices, the following observations can be made:(1) As the coupling gap increases, the resonance modes progressively transition from the over-coupled regime to the critically coupled regime, and eventually to the under-coupled regime. (2) The overall symmetry of the dispersion curves about the central mode confirms that the dispersion landscape is only weakly perturbed.
DOI: 10.15468/dl.nxgqc8
title: Occurrence Download

description: A dataset containing 1073 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is MATRIX project, Kampala monkey trees"
 ]
}

 The dataset includes 1073 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032351-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q635sn
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dunckerocampus dactyliophorus",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032353-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ey5p6s
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea javanica"
 ]
}

 The dataset includes 113 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032352-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27276558.v2
title: Chinese public online search data based on Baidu Index

description: This dataset, based on the Baidu Index, collects online public search data on vaccination in China from 2011 to 2023, as well as public interest in the Ebola vaccine in 2014 and the 2019-nCoV vaccine in 2021. In addition, it includes the original data of relevant independent variables for the analysis of influencing factors.
DOI: 10.6084/m9.figshare.27276558.v1
title: Chinese public online search data based on Baidu Index

description: This dataset collects data on online public searches for vaccination in China from 2011 to 2023 based on the Baidu Index, as well as online public interest in the Ebola vaccine in 2014 and the 2019-nCoV vaccine in 2021.
DOI: 10.6084/m9.figshare.27276558
title: Chinese public online search data based on Baidu Index

description: This dataset collects data on online public searches for vaccination in China from 2011 to 2023 based on the Baidu Index, as well as online public interest in the Ebola vaccine in 2014 and the 2019-nCoV vaccine in 2021.
DOI: 10.15468/dl.jp44tu
title: Occurrence Download

description: A dataset containing 2931 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Superb Parrot Monitoring project"
 ]
}

 The dataset includes 2931 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032354-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.