cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7742819.v3
title: Code and data for Nutrient stoichiometry shapes microbial coevolution

description: Data and code supporting 'Nutrient stoichiometry shapes microbial coevolution. Larsen, M.L., S.W. Wilhelm, and J.T. Lennon.'<br><br>ABSTRACT Coevolution is a force contributing to the generation and maintenance of biodiversity. It is influenced by environmental conditions including the scarcity of essential resources, which can drive the evolution of defense and virulence traits. We conducted a long-term chemostat experiment where the marine cyanobacterium <i>Synechococcus</i> was challenged with a lytic phage under nitrogen (N) or phosphorus (P) limitation. This manipulation of nutrient stoichiometry altered the stability of host-parasite interactions and the underlying mode of coevolution. By assessing infectivity with &gt;18,000 pairwise challenges, we documented directional selection for increased phage resistance, consistent with arms-race dynamics while phage infectivity fluctuated through time, as expected when coevolution is driven by negative frequency-dependent selection. The resulting infection networks were 50 % less modular under N- versus P-limitation reflecting host-range contraction and asymmetric coevolutionary trajectories. Nutrient stoichiometry affects eco-evolutionary feedbacks in ways that may alter the dynamics and functioning of environmental and host-associated microbial communities.
DOI: 10.7284/106682
title: GNSS (Global Navigation Satellite System) data collected during research cruise AMAT09RR using a Furuno GP-90D instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7742819.v2
title: Code and data for Nutrient stoichiometry shapes microbial coevolution

description: Data and code supporting 'Nutrient stoichiometry shapes microbial coevolution. Larsen, M.L., S.W. Wilhelm, and J.T. Lennon.'<br><br>ABSTRACT Coevolution is a force contributing to the generation and maintenance of biodiversity. It is influenced by environmental conditions including the scarcity of essential resources, which can drive the evolution of defense and virulence traits. We conducted a long-term chemostat experiment where the marine cyanobacterium <i>Synechococcus</i> was challenged with a lytic phage under nitrogen (N) or phosphorus (P) limitation. This manipulation of nutrient stoichiometry altered the stability of host-parasite interactions and the underlying mode of coevolution. By assessing infectivity with &gt;18,000 pairwise challenges, we documented directional selection for increased phage resistance, consistent with arms-race dynamics while phage infectivity fluctuated through time, as expected when coevolution is driven by negative frequency-dependent selection. The resulting infection networks were 50 % less modular under N- versus P-limitation reflecting host-range contraction and asymmetric coevolutionary trajectories. Nutrient stoichiometry affects eco-evolutionary feedbacks in ways that may alter the dynamics and functioning of environmental and host-associated microbial communities.
DOI: 10.7284/106678
title: Meteorological Station data collected during research cruise AMAT09RR using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7742735
title: WACCM4 150 Tg US-Russia

description: 150 Tg injection of soot over US and Russia over one week using CESM-WACCM4.nw_ur_150_07_mini are the monthly output files of the variables: T,PRECC,PRECL,PS,Z3,RELHUM,Q,FSNS,FSDS,CRSOOTMR,CRSOOTRE,AEROD_v
DOI: 10.6084/m9.figshare.7742759
title: Dataset of residential buildings performance, construction, geometry, and ventilation for sixteen mediterranean locations

description: This dataset comprises the performance, construction, geometry, and ventilation data of residential buildings for 16 climate regions. 500 residential buildings have different ventilation parameters for air changes per hour, and indoor minimum temperature and delta temperature for window opening, for each climate location (totalizing 1080 thousand buildings). The climate regions are CYP_Larnaca, DZA_Algiers, EGY_Alexandria, ESP_Malaga, ESP_Valencia, FRA_Marseille, GRC_Athens, ISR_TelAviv, ITA_Naples, ITA_Venice, LBY_Tripoli, MAR_Casablanca, MNE_Podgorica, TUN_Tunis, TUR_Istanbul, and TUR_Izmir, available at the Department of Energy (URL https://energyplus.net/weather). The geometric data was generated using the EPSAP algorithm (URL http://dx.doi.org/10.1016/j.cad.2013.01.001; http://dx.doi.org/10.1016/j.cad.2013.01.003; http://dx.doi.org/10.1016/j.autcon.2013.06.005); the construction elements physical properties were saved from the EPSAP algorithm database; and, the performance data was obtained using the FPOP algorithm coupled to the simulation engine EnergyPlus v8.8.0 (URL http://dx.doi.org/10.1016/j.enbuild.2014.06.016; http://dx.doi.org/10.1016/j.apenergy.2014.06.068).
DOI: 10.7284/110003
title: Multibeam Echosounder data collected during research cruise AMAT09RR using a Kongsberg EM120 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7742594
title: CCDB_1027.jpg

description: Optical section series through a protoplasmic astrocyte in rat hippocampal area CA1 intracellulaly injected Lucifer Yellow and imaged with confocal microscopy
DOI: 10.6084/m9.figshare.7742723
title: Raw data and survey of risk perception to medical marijuana of medical residents

description: Raw data and surveys of attitudes to medical marijuana of medical residents
DOI: 10.6084/m9.figshare.7742732
title: GISS ModelE 150 Tg US-Russia

description: 150 Tg injection of black carbon over US and Russia using GISS ModelE
DOI: 10.6084/m9.figshare.7742594.v1
title: CCDB_1027.jpg

description: Optical section series through a protoplasmic astrocyte in rat hippocampal area CA1 intracellulaly injected Lucifer Yellow and imaged with confocal microscopy
DOI: 10.6084/m9.figshare.7742723.v1
title: Raw data and survey of risk perception to medical marijuana of medical residents

description: Raw data and surveys of attitudes to medical marijuana of medical residents
DOI: 10.7284/125833
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AR10 using a Hawaii UHDAS instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7742591
title: CCDB_1026.jpg

description: Optical section series through a protoplasmic astrocyte in rat hippocampal area CA1 intracellulaly injected Lucifer Yellow and imaged with confocal microscopy
DOI: 10.6084/m9.figshare.7742591.v1
title: CCDB_1026.jpg

description: Optical section series through a protoplasmic astrocyte in rat hippocampal area CA1 intracellulaly injected Lucifer Yellow and imaged with confocal microscopy
DOI: 10.7284/125343
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AR10 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125341
title: Fluorometer data collected during research cruise AR10 using a WET Labs WETStar instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.21253/dmu.7742156
title: Data from 'Economic analysis of ransomware' by Hernandez-Castro, Cartwright and Stepanova (2017)

description: This is the survey data reported in paper 'Economic analysis of ransomware', by Hernandez-Castro, Cartwright and Stepanova (2017). It is a survey of willingness to pay (WTP) and willingness to accept (WTA) for loss of computer files. 149 participants took part in the survey. For each participant we have gender, age, whether they own a computer, WTP and WTA. For details on how WTP and WTA were elicited please see the paper.
DOI: 10.7284/125348
title: GNSS (Global Navigation Satellite System) data collected during research cruise AR10 using a C&C C-Nav 3050 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.21253/dmu.7742156.v1
title: Data from 'Economic analysis of ransomware' by Hernandez-Castro, Cartwright and Stepanova (2017)

description: This is the survey data reported in paper 'Economic analysis of ransomware', by Hernandez-Castro, Cartwright and Stepanova (2017). It is a survey of willingness to pay (WTP) and willingness to accept (WTA) for loss of computer files. 149 participants took part in the survey. For each participant we have gender, age, whether they own a computer, WTP and WTA. For details on how WTP and WTA were elicited please see the paper.
DOI: 10.6084/m9.figshare.7740254
title: Supplementary data for 'Integrated modeling of insect population dynamics at two temporal scales'

description: This zip file contains the data associated with the manuscript entitled Integrated modeling of insect population dynamics at two temporal scalesbyE Dennis, M. Kery, B. Morgan, A. Coray, M. Schaub & B. Baur<br>Please see the manuscript for further details of the data and how they were collected. <br>Accompanying R scripts are also available.<br>
DOI: 10.6084/m9.figshare.7740254.v1
title: Supplementary data for 'Integrated modeling of insect population dynamics at two temporal scales'

description: This zip file contains the data associated with the manuscript entitled Integrated modeling of insect population dynamics at two temporal scalesbyE Dennis, M. Kery, B. Morgan, A. Coray, M. Schaub & B. Baur<br>Please see the manuscript for further details of the data and how they were collected. <br>Accompanying R scripts are also available.<br>
DOI: 10.7284/125838
title: Gravimeter data collected during research cruise AR10 using a Bell BGM-3 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.12871811
title: R0191_20170926a_videos

description: Rat 0191, skilled reaching data collected on 9/26/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.7740197
title: Supplementary Material for Latent Space Phenotyping

description: Data for the synthetic circle model and rosette model and utility scripts for Latent Space Phenotyping (LSP).<br>Please cite https://doi.org/10.34133/2020/5801869
DOI: 10.6084/m9.figshare.7741982.v1
title: Alterations of skeletal muscle bioenergetics in a mouse with F508del mutation leading to a cystic fibrosis-like condition

description: Figure 1S. State 4 respiratory rates of skeletal muscle subsarcolemmal (a) and interfibrillar (b) mitochondria in presence of mitochondria substrates for: complex I (malate and glutamate, G<sub>M</sub>), (malate and pyruvate, P<sub>M</sub>); complex II (succinate and rotenone, S<sub>R</sub>); complex III (duroquinol and rotenone, (DHQ<sub>R</sub>); complex IV (TMPD, ascorbate and rotenone, TMPD+A)<sub>R</sub>. * p&lt;0.05 WT (n=6) vs. CF (n=7), Mean ± standard deviation. Figure 2S. The ratio ADP to atomic oxygen phosphorylation (ADP/O) of skeletal muscle SSM (a) and IFM (b) in CF and WT mice. Complex I (malate and glutamate, G<sub>M</sub>; malate and pyruvate, P<sub>M</sub>); complex II (succinate and rotenone, S<sub>R</sub>); complex III (duroquinol and rotenone, (DHQ<sub>R</sub>). * p&lt;0.05 WT (n=6) vs. CF (n=7), Mean ± standard deviation.
DOI: 10.7284/125342
title: Gyrocompass data collected during research cruise AR10 using a Sperry NAVIGAT X MK 1 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.23641/asha.7740191
title: Engineering In Speech Science (Hagedorn et al., 2019)

description: <b>Purpose:</b> As increasing amounts and types of speech data become accessible, health care and technology industries increasingly demand quantitative insight into speech content.The potential for speech data to provide insight into cognitive, affective, and psychological health states and behavior crucially depends on the ability to integrate speech data into the scientific process. Current engineering methods for acquiring, analyzing, and modeling speech data present the opportunity to integrate speech data into the scientific process. Additionally, machine learning systems recognize patterns in data that can facilitate hypothesis generation, data analysis, and statistical modeling. The goals of the present article are (a) to review developments across these domains that have allowed real-time magnetic resonance imaging to shed light on aspects of atypical speech articulation; (b) in a parallel vein, to discuss how advancements in signal processing have allowed for an improved understanding of communication markers associated with autism spectrum disorder; and (c) to highlight the clinical significance and implications of the application of these technological advancements to each of these areas.<br><b>Conclusion:</b> The collaboration of engineers, speech scientists, and clinicians has resulted in (a) the development of biologically inspired technology that has been proven useful for both small- and large-scale analyses, (b) a deepened practical and theoretical understanding of both typical and impaired speech production, and (c) the establishment and enhancement of diagnostic and therapeutic tools, all having far-reaching, interdisciplinary significance.
DOI: 10.23641/asha.7740191.v1
title: Engineering In Speech Science (Hagedorn et al., 2019)

description: <b>Purpose:</b> As increasing amounts and types of speech data become accessible, health care and technology industries increasingly demand quantitative insight into speech content.The potential for speech data to provide insight into cognitive, affective, and psychological health states and behavior crucially depends on the ability to integrate speech data into the scientific process. Current engineering methods for acquiring, analyzing, and modeling speech data present the opportunity to integrate speech data into the scientific process. Additionally, machine learning systems recognize patterns in data that can facilitate hypothesis generation, data analysis, and statistical modeling. The goals of the present article are (a) to review developments across these domains that have allowed real-time magnetic resonance imaging to shed light on aspects of atypical speech articulation; (b) in a parallel vein, to discuss how advancements in signal processing have allowed for an improved understanding of communication markers associated with autism spectrum disorder; and (c) to highlight the clinical significance and implications of the application of these technological advancements to each of these areas.<br><b>Conclusion:</b> The collaboration of engineers, speech scientists, and clinicians has resulted in (a) the development of biologically inspired technology that has been proven useful for both small- and large-scale analyses, (b) a deepened practical and theoretical understanding of both typical and impaired speech production, and (c) the establishment and enhancement of diagnostic and therapeutic tools, all having far-reaching, interdisciplinary significance.
DOI: 10.7284/125347
title: Multibeam Echosounder data collected during research cruise AR10 using a Kongsberg EM710 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7740173
title: Effect of the carbon structure on the capacitance of aqueous supercapacitors

description: Processed data from molecular dynamics simulations + corresponding figures<br>
DOI: 10.6084/m9.figshare.7740197.v1
title: Supplementary Material for Latent Space Phenotyping

description: Data for the synthetic circle model and rosette model and utility scripts for Latent Space Phenotyping (LSP).<br>Please cite https://doi.org/10.1101/557678
DOI: 10.1184/r1/7740170
title: Contingent Responsivity in Technology Modeled from Quality Adult-Child Interactions: Effects on Young Children’s Learning and Attention

description: The datasets, syntaxes/analyses, codebook, and supplementary materials from 3 within-subject experiments in which preschool-aged children were presented with an experimental contingent book and 3 control conditions: a board book (Experiment 1), a static digital book (Experiment 2), and an animated book (Experiment 3). <br>
DOI: 10.7284/125345
title: Radiometer data collected during research cruise AR10 using a Biospherical QSR-2150 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.1184/r1/7740170.v1
title: Contingent Responsivity in Technology Modeled from Quality Adult-Child Interactions: Effects on Young Children’s Learning and Attention

description: The datasets, syntaxes/analyses, codebook, and supplementary materials from 3 within-subject experiments in which preschool-aged children were presented with an experimental contingent book and 3 control conditions: a board book (Experiment 1), a static digital book (Experiment 2), and an animated book (Experiment 3). <br>
DOI: 10.6084/m9.figshare.7740173.v1
title: Effect of the carbon structure on the capacitance of aqueous supercapacitors

description: Processed data from molecular dynamics simulations + corresponding figures<br>
DOI: 10.6084/m9.figshare.7740197.v3
title: Supplementary Material for Latent Space Phenotyping

description: Data for the synthetic circle model and rosette model and utility scripts for Latent Space Phenotyping (LSP).<br>Please cite https://doi.org/10.34133/2020/5801869
DOI: 10.6084/m9.figshare.7740164
title: TwinPond_d18O.csv from Detecting past changes in vegetation resilience in the context of a changing climate

description: Isotopic data from doi:10.1016/j.yqres.2016.02.009
DOI: 10.6084/m9.figshare.7740197.v2
title: Supplementary Material for Latent Space Phenotyping

description: Data for the synthetic circle model and rosette model and utility scripts for Latent Space Phenotyping (LSP).<br>Please cite https://doi.org/10.1101/557678
DOI: 10.7284/125346
title: Radiometer data collected during research cruise AR10 using a Eppley RAD instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7740131
title: Tweet Message IDs

description: Tweet Message IDs from users studied.
DOI: 10.6084/m9.figshare.7740161
title: calder.shuman.bio.lettters.R from Detecting past changes in vegetation resilience in the context of a changing climate

description: code to reproduce results
DOI: 10.6084/m9.figshare.7740164.v1
title: TwinPond_d18O.csv from Detecting past changes in vegetation resilience in the context of a changing climate

description: Isotopic data from doi:10.1016/j.yqres.2016.02.009
DOI: 10.6084/m9.figshare.7740161.v1
title: calder.shuman.bio.lettters.R from Detecting past changes in vegetation resilience in the context of a changing climate

description: code to reproduce results
DOI: 10.7284/125340
title: Speedlog data collected during research cruise AR10 using a JRC JLN-550 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125337
title: Splitbeam Echosounder data collected during research cruise AR10 using a Kongsberg EK80 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125344
title: SSV (Sound Speed Velocimeter) data collected during research cruise AR10 using a AML SmartX P1S2 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7740071
title: 1602_Gosens_RNAseq.expression.genelevel.v75.htseq.txt

description: p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; text-align: justify; font: 12.0px 'Helvetica Neue'; color: #454545} Complete processed RNA Sequencing dataset containing all raw read counts per sample. Samples were primary human lung fibroblasts obtained from 4 donors, each treated with 1 of 4 conditions (Vehicle, CHIR99021, TGFβ, CHIR99021 + TGFβ) for 24 hours prior to RNA isolation and processing for RNA sequencing (see text for details).
DOI: 10.7284/125339
title: Water Temperature data collected during research cruise AR10 using a Sea-Bird SBE-48 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125338
title: TSG (Thermosalinograph) data collected during research cruise AR10 using a Sea-Bird SBE-45 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122195
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AR1-01 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122179
title: GNSS (Global Navigation Satellite System) data collected during research cruise AR1-01 using a C&C C-Nav 3050 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122194
title: Gyrocompass data collected during research cruise AR1-01 using a Sperry NAVIGAT X MK 1 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122193
title: TSG (Thermosalinograph) data collected during research cruise AR1-01 using a Sea-Bird SBE-45 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122180
title: GNSS (Global Navigation Satellite System) data collected during research cruise AR1-02 using a C&C C-Nav 3050 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7739891
title: Dataset for Dunham et al "Free-ranging primates largely use diagonal sequence gaits regardless of substrate diameter"

description: Dataset used to analyze the influence of substrate diameter and phylogenetic history on gait usage (i.e., limb phase) in eleven species of free-ranging platyrrhines moving about in their natural environment
DOI: 10.6084/m9.figshare.7739891.v1
title: Dataset for Dunham et al "Free-ranging primates largely use diagonal sequence gaits regardless of substrate diameter"

description: Dataset used to analyze the influence of substrate diameter and phylogenetic history on gait usage (i.e., limb phase) in eleven species of free-ranging platyrrhines moving about in their natural environment
DOI: 10.7284/122196
title: TSG (Thermosalinograph) data collected during research cruise AR1-02 using a Sea-Bird SBE-45 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7739882
title: Depression Score and Primary Hyperparathyroidism

description: Figure 1: Relationship between changes in PHQ-9 score (12 month score-baseline score) after parathyroid surgery, and baseline A.PTH, B. calcium, and C. Baseline PHQ-9 score.
DOI: 10.6084/m9.figshare.7739843
title: Table S1. Sedimentary development of the Mid-Permian–Mid-Triassic Maitai continental margin forearc basin, South Island, New Zealand

description: Point-count data for selected, well-preserved samples of Maitai Group sandstones, used to plot the Q–F–L diagram.