cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14553650
title: Enggano Flora and Fauna Lexicon

description: Overview

This repository (Wijaya et al., 2024) holds the annotated databases for the Enggano Flora and Fauna Lexicon. The databases, originally stored as Google Spreadsheets for collaboration, are then accessed and processed using R codes in this repository using several R packages (Bryan, 2023; Cysouw, 2018; D'Agostino McGowan & Bryan, 2023; Moran & Cysouw, 2018; Ooms, 2023; Wickham et al., 2019; Wickham & Bryan, 2023).

The processing includes creating orthography profile and tokenisation/segmentation of the phonemic transcription, and, most importantly, creating links between the Enggano forms and their corresponding pictures (ID) to be used in the Contemporary Enggano Dictionary, which is processed using R here.

The databases consist of four different file types: .rds (R data file), .csv, .tsv, and .xlsx.



Dendi Wijaya gathered the primary data in October 2023 and November 2024; transcribed the forms; translated them into Indonesian and English; provided the IPA transcription; and rename the photos according to the ID of the forms.

Gede Primahadi W. Rajeg (GPWR) checked which items have been in the contemporary Enggano FLEx databases and which one to exclude from the main dictionary databases (e.g., due to duplication, etc.), in consultation with Engga Zakaria Sangian. GPWR also manually annotated the main entry variable of the forms so that complex forms can be subsumed under/linked to their main/root entry in the dictionary; annotated the crossref. column; performed the segmentation of the IPA transcription (and fixed errors); linked the forms ID with the photo by filename; manage this GitHub repository for archiving. Computational steps involved are documented in this repository.

Engga Zakaria Sangian was consulted in a number of meetings for the verification of orthography and inclusion of the forms.
description: Please cite this database if you use it for your research
DOI: 10.5281/zenodo.14553651
title: Enggano Flora and Fauna Lexicon

description: Overview

This repository (Wijaya et al., 2024) holds the annotated databases for the Enggano Flora and Fauna Lexicon. The databases, originally stored as Google Spreadsheets for collaboration, are then accessed and processed using R codes in this repository using several R packages (Bryan, 2023; Cysouw, 2018; D'Agostino McGowan & Bryan, 2023; Moran & Cysouw, 2018; Ooms, 2023; Wickham et al., 2019; Wickham & Bryan, 2023).

The processing includes creating orthography profile and tokenisation/segmentation of the phonemic transcription, and, most importantly, creating links between the Enggano forms and their corresponding pictures (ID) to be used in the Contemporary Enggano Dictionary, which is processed using R here.

The databases consist of four different file types: .rds (R data file), .csv, .tsv, and .xlsx.



Dendi Wijaya gathered the primary data in October 2023 and November 2024; transcribed the forms; translated them into Indonesian and English; provided the IPA transcription; and rename the photos according to the ID of the forms.

Gede Primahadi W. Rajeg (GPWR) checked which items have been in the contemporary Enggano FLEx databases and which one to exclude from the main dictionary databases (e.g., due to duplication, etc.), in consultation with Engga Zakaria Sangian. GPWR also manually annotated the main entry variable of the forms so that complex forms can be subsumed under/linked to their main/root entry in the dictionary; annotated the crossref. column; performed the segmentation of the IPA transcription (and fixed errors); linked the forms ID with the photo by filename; manage this GitHub repository for archiving. Computational steps involved are documented in this repository.

Engga Zakaria Sangian was consulted in a number of meetings for the verification of orthography and inclusion of the forms.
description: Please cite this database if you use it for your research
DOI: 10.5281/zenodo.14552212
title: Integrated Proteomics and Metabolomics Profiling unveils biomarkers and immune characteristics for Pelvic Lymph Node Metastasis in Cervical Cancer.

description: Pelvic lymph node metastasis (PLNM) significantly affects the prognosis of cervical cancer (CC). However, current imaging examinations and serum squamous cell carcinoma antigen (SCCA) testing are inadequate for assessing the pelvic lymph node status in CC. To identify accurate noninvasive biomarkers for predicting PLNM for minimizing unnecessary postoperative lymphadenectomy and its associated complications, we performed a comprehensive proteomic and metabolomic analysis of plasma from 124 patients with CC, along with a proteomic analysis of 52 paired tissue samples. Through machine learning methods, we identified potential plasma biomarkers (TTR, MASP2, APOD, and 7α-Hydroxy-cholestene-3-one) and constructed a diagnostic model. In the validation cohort, the diagnostic model combined with SCCA exhibited a higher sensitivity (72.4%) than SCCA (64.3%) and imaging examination (14.3%). The plasma protein biomarkers were consistently validated in paired tissue samples. Additionally, immune infiltration analysis demonstrated that CD4 and CD8 T cells were highly infiltrated in the PLNM group, suggesting a potentially enhanced response to immunotherapy. Here, we established a biomarker panel for PLNM and highlighted the altered immune characteristics associated with PLNM, offering valuable insights for the development of immunotherapy strategies for patients with PLNM.
DOI: 10.5281/zenodo.14552213
title: Integrated Proteomics and Metabolomics Profiling unveils biomarkers and immune characteristics for Pelvic Lymph Node Metastasis in Cervical Cancer.

description: Pelvic lymph node metastasis (PLNM) significantly affects the prognosis of cervical cancer (CC). However, current imaging examinations and serum squamous cell carcinoma antigen (SCCA) testing are inadequate for assessing the pelvic lymph node status in CC. To identify accurate noninvasive biomarkers for predicting PLNM for minimizing unnecessary postoperative lymphadenectomy and its associated complications, we performed a comprehensive proteomic and metabolomic analysis of plasma from 124 patients with CC, along with a proteomic analysis of 52 paired tissue samples. Through machine learning methods, we identified potential plasma biomarkers (TTR, MASP2, APOD, and 7α-Hydroxy-cholestene-3-one) and constructed a diagnostic model. In the validation cohort, the diagnostic model combined with SCCA exhibited a higher sensitivity (72.4%) than SCCA (64.3%) and imaging examination (14.3%). The plasma protein biomarkers were consistently validated in paired tissue samples. Additionally, immune infiltration analysis demonstrated that CD4 and CD8 T cells were highly infiltrated in the PLNM group, suggesting a potentially enhanced response to immunotherapy. Here, we established a biomarker panel for PLNM and highlighted the altered immune characteristics associated with PLNM, offering valuable insights for the development of immunotherapy strategies for patients with PLNM.
DOI: 10.15468/dl.qzq4kw
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Madagascar",
 "TaxonKey is Microgale majori Thomas, 1918"
 ]
}

 The dataset includes 104 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048138-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qud37s
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Madagascar",
 "TaxonKey is Microgale monticola Goodman & Jenkins, 1998"
 ]
}

 The dataset includes 31 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048139-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k6bavm
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Madagascar",
 "TaxonKey is Microgale nasoloi Jenkins & Goodman, 1999"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048140-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tqfa6s
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Phyllanthus fluitans Benth. ex Müll.Arg. (Phyllanthaceae): A new record for the alien flora of Java, Indonesia"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048142-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ugcczu
title: Occurrence Download

description: A dataset containing 232 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Madagascar",
 "TaxonKey is Microgale parvula G.Grandidier, 1934"
 ]
}

 The dataset includes 232 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048141-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c4kgvg
title: Occurrence Download

description: A dataset containing 172 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Madagascar",
 "TaxonKey is Microgale principula Thomas, 1926"
 ]
}

 The dataset includes 172 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048143-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m6k2z5
title: Occurrence Download

description: A dataset containing 248 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Madagascar",
 "TaxonKey is Microgale pusilla Major, 1896"
 ]
}

 The dataset includes 248 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048145-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bcet4x
title: Occurrence Download

description: A dataset containing 9080266 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Animalia",
 "Country is Japan"
 ]
}

 The dataset includes 9080266 records from 1956 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048137-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wxbxtg
title: Occurrence Download

description: A dataset containing 284 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Leucocoprinus ianthinus (Sacc.) P.Mohr)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 284 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064647-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s2bq5z
title: Occurrence Download

description: A dataset containing 571 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Argyrochosma incana (C.Presl) Windham"
 ]
}

 The dataset includes 571 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0279232-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111330498
title: Wycliffite New Testament, MS.000340

description: [Text Description:] New Testament translation by John Wycliffe ❧ [Text or Publication Number Note:] MS.000340 ❧ [Medium:] Parchment ❧ [Script Note:] Gothic ❧ [Physical Object Description:] 218 folios; 9 x 6.1 x 3.1 in. (22.9 x 15.5 x 8 cm) ❧ [Physical Object Note:] Vellum with ink. Two columns of 36 lines, visible ruler lines. Leather binding with brass corner pieces and center bosses, letters "A C" stamped on either side. ❧ [Physical Object Note:] Illuminated initials in burnished gold at beginning of each book of the New Testament.
DOI: 10.15468/dl.pdefj5
title: Occurrence Download

description: A dataset containing 345 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Galium hypotrichium A.Gray"
 ]
}

 The dataset includes 345 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031252-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x5t28k
title: Occurrence Download

description: A dataset containing 16422 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aquilaria Lam."
 ]
}

 The dataset includes 16422 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046112-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jp3pmz
title: Occurrence Download

description: A dataset containing 26002 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is 64ee55c9-570a-42af-b7da-3f13c6b4e5a9",
 "InstitutionCode is nmb"
 ]
}

 The dataset includes 26002 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076771-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111330688
title: Wycliffite New Testament, MS.000340

description: [Text Description:] New Testament translation by John Wycliffe ❧ [Text or Publication Number Note:] MS.000340 ❧ [Medium:] Parchment ❧ [Script Note:] Gothic ❧ [Physical Object Description:] 218 folios; 9 x 6.1 x 3.1 in. (22.9 x 15.5 x 8 cm) ❧ [Physical Object Note:] Vellum with ink. Two columns of 36 lines, visible ruler lines. Leather binding with brass corner pieces and center bosses, letters "A C" stamped on either side. ❧ [Physical Object Note:] Illuminated initials in burnished gold at beginning of each book of the New Testament.
DOI: 10.15468/dl.a22kt2
title: Occurrence Download

description: A dataset containing 411 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Arracacia xanthorrhiza Bancr.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 411 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017437-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yfg9eg
title: Occurrence Download

description: A dataset containing 849 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cephalotaxus fortunei Hook.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 849 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098649-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z5xwsu
title: Occurrence Download

description: A dataset containing 1185 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Apoyo para la infraestructura de la colección de artrópodos con y sin importancia médica del Laboratorio Estatal de Salud Pública del Estado de Guanajuato",
 "TaxonKey is Latrodectus mactans (Fabricius, 1775)"
 ]
}

 The dataset includes 1185 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008773-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5cf9jj32
title: MassIVE MSV000094960 - Protein ID of the purified Arabidopsis TIC complex
title: Protein ID of the purified Arabidopsis TIC complex
DOI: 10.25549/inscriptifact-ouc111332303
title: "Wyman Fragment" (Uncial 0220), Uncial 0220

description: [Text Description:] "Wyman Fragment" (Uncial 0220), Romans 4:23–5:3; 5:8–13 in Greek ❧ [Text or Publication Number Note:] Uncial 0220; MS.000566 ❧ [Medium:] Parchment ❧ [Script Note:] Greek ❧ [Physical Object Description:] A fragmentary vellum leaf with ink. ❧ [Physical Object Note:] 3.2 x 4.3 in. (8.1 x 11 cm)
DOI: 10.15468/dl.yy9qu5
title: Occurrence Download

description: A dataset containing 33590 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-71.34315 42.40977,-71.28685 42.40977,-71.28685 42.45538,-71.34315 42.45538,-71.34315 42.40977))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 33590 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019727-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n3wsmz
title: Occurrence Download

description: A dataset containing 52290 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centranthus ruber (L.) DC.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 52290 records from 450 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098632-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111325627
title: Latin Manuscript with Illuminations, MS.000136

description: [Text Description:] Latin Manuscript with Illuminations ❧ [Text or Publication Number Note:] MS.000136 ❧ [Medium:] Parchment ❧ [Script Note:] Latin ❧ [Physical Object Description:] Folios approx. 24 x 35 cm ❧ [Physical Object Note:] Vellum with ink, red and black (now oxidized to brown). ❧ [Physical Object Note:] Many small illuminated capital letters on each page. Some larger, more ornate illuminations.
DOI: 10.15468/dl.hpgmjx
title: Occurrence Download

description: A dataset containing 143 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-74.31702 4.54357,-74.69055 4.78447,-74.99817 4.41214,-74.4928 4.13824,-74.31702 4.54357))",
 "TaxonKey is Tachyphonus rufus (Boddaert, 1783)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 143 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079499-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rjngns
title: Occurrence Download

description: A dataset containing 934 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Unknown evidence"
 ]
 },
 "Country is United States of America",
 {
 "or" : [
 "Month is March",
 "Month is April",
 "Month is May",
 "Month is June",
 "Month is July",
 "Month is August",
 "Month is September",
 "Month is October",
 "Month is November",
 "Month is December"
 ]
 },
 "Year 2000-2020",
 "Geometry POLYGON((-80.50781 12.55456,-41.13281 12.55456,-41.13281 56.17002,-80.50781 56.17002,-82.08984 28.95996,-80.50781 12.55456))",
 "TaxonKey is Megaptera novaeangliae (Borowski, 1781)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 934 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008806-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111325592
title: Latin Manuscript with Illuminations, MS.000136

description: [Text Description:] Latin Manuscript with Illuminations ❧ [Text or Publication Number Note:] MS.000136 ❧ [Medium:] Parchment ❧ [Script Note:] Latin ❧ [Physical Object Description:] Folios approx. 24 x 35 cm ❧ [Physical Object Note:] Vellum with ink, red and black (now oxidized to brown). ❧ [Physical Object Note:] Many small illuminated capital letters on each page. Some larger, more ornate illuminations.
DOI: 10.15468/dl.4f4gk5
title: Occurrence Download

description: A dataset containing 1856 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Semicassis pyrum (Lamarck, 1822)"
 ]
}

 The dataset includes 1856 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098664-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qha9px
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1868-2017",
 "Geometry POLYGON((4.63585 51.79769,4.66509 51.79771,4.66812 51.80911,4.65415 51.81442,4.63585 51.79769))",
 "DatasetKey is Dutch Vegetation Database",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 16 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082680-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111325550
title: Latin Manuscript with Illuminations, MS.000136

description: [Text Description:] Latin Manuscript with Illuminations ❧ [Text or Publication Number Note:] MS.000136 ❧ [Medium:] Parchment ❧ [Script Note:] Latin ❧ [Physical Object Description:] Folios approx. 24 x 35 cm ❧ [Physical Object Note:] Vellum with ink, red and black (now oxidized to brown). ❧ [Physical Object Note:] Many small illuminated capital letters on each page. Some larger, more ornate illuminations.
DOI: 10.15468/dl.wavush
title: Occurrence Download

description: A dataset containing 409 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gentiana newberryi A.Gray"
 ]
}

 The dataset includes 409 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031256-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s8yy3f
title: Occurrence Download

description: A dataset listing the 126 species recorded in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Vanilla Plum. ex Mill.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 126 records were derived from 190 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076754-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.