cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34949/3zrq-0q66
title: A Randomized, Double-blind, Multicenter Phase II/III Study to Compare the Efficacy of Cediranib (RECENTIN, AZD2171) in Combination With 5-fluorouracil, Leucovorin, and Oxaliplatin (FOLFOX), to the Efficacy of Bevacizumab in Combination With FOLFOX in Patients With Previously Untreated Metastatic Colorectal Cancer
DOI: 10.25919/cnxc-zq55
title: Parkes observations for project PX500 semester 2020OCTS_07

description: This proposal relates to time purchased by the Chinese Academy of Sciences for Parkes follow-up confirmation and timing of FAST discoveries. As the observing time has been purchased this proposal (and the related PX501) does not require TAC grading. The primary reason for submitting a proposal is to ensure an outreach statement and that the proposal is entered into OPAL for the data archive to access. The Chinese team have two time requests. The time scheduled for the first, relating to this proposal, will be allocated in blocks of 24 hours and the data will become available in the data archive with an 18 month embargo period. The second type of time will be scheduled in shorter blocks and the data archived with a 10 year embargo.
DOI: 10.6073/pasta/ae8b2f7626fd96a24bf347ad5e8ba733
title: Flower and Leaf Phenology of Interior Alaska Forbs and Shrubs as Observed Near Fairbanks Alaska from 2013-2015

description: This dataset contains the dates of phenological phases for leaves and flowers of 42 species of forbs and shrubs (2 subspecies of one species) observed throughout the growing season in 2013, 2014 and 2015. Data were collected in three general areas: in the Bonanza Creek Experimental Forest, on the University of Alaska Fairbanks Campus, and in the woods near Pearl Creek Elementary School. Species are classified by origin (native or non-native), growth form (forb, dwarf shrub, or tall shrub), leaf habit (deciduous, wintergreen or evergreen), plant life history (annual, biennial, or perennial), and habitat (black spruce forest, mixed deciduous / coniferous forest, or disturbed habitat).
DOI: 10.6073/pasta/68631f7869f6ff343f45371e2138f111
title: Survey of Aspen leaf miner (Phyllocnistis populiella) Oviposition Per Leaf Sampled in Interior Alaska Aspen Stands near Fairbanks from 2004 to 2020

description: The datasets contains annual counts of aspen leaf miner eggs and incipient mines on leaves over time. There are two files representing pilot data from 2004-2005 and data 2006-2020. The 2004-05 dataset does not include egg scars, indicaitive of egg removal, and therefore totals underestimate total oviposition. The 2006-2020 dataset does include egg scars and therefore can be used to estimate total oviposition per leaf.
DOI: 10.6073/pasta/e50e13613e6209b7f048fb38cd5cb510
title: Annual aspen growth (basal area increment; BAI) of 84 aspen that were alive and 76 that were dead when sampled in 2016 from 22 plots (eight sites) that are a part of the Cooperative Alaska Forest Inventory (CAFI)

description: This dataset contains basal area increment (BAI) chronologies of 84 aspen the were alive and 76 that were dead in 2016. Live trees were cored and dead trees felled in 2016 across 22 plots (eight sites) that are a part of the Cooperative Alaska Forest Inventory (CAFI). Chronologies of BAI extend as far back as 1901 and up to 2015.
DOI: 10.6073/pasta/435fb4185cfe01be2cf9520668c11f42
title: Tree characteristics of 84 aspen that were alive and 76 that were dead when sampled in 2016 from 22 plots (8 sites) that are a part of the Cooperative Alaska Forest Inventory (CAFI)

description: This dataset contains diameter at breast height (DBH) in 2016 and 1997, canopy position in 2016, last year of full growth, year of death, year established, age at last year of full growth, and age at year of death of 84 aspen that were alive and 76 that were dead in 2016 from 22 plots (8 sites) that are a part of the Cooperative Alaska Forest Inventory (CAFI).
DOI: 10.6073/pasta/066f9fa812bdb71eb3e373806a2f3f78
title: Seasonal climate data (growing season, spring, fall/winter, and previous growing season) at an annual resolution for eight sites from the Cooperative Alaska Forest Inventory (CAFI) from 1945 - 2013.

description: This dataset contains site-level measurements from 1945 - 2013 of seasonal (growing season, spring, fall/winter, and previous growing season) climate moisture index (CMI), average temperature, and total precipitation at an annual resolution for eight sites from the Cooperative Alaska Forest Inventory (CAFI) from 1945 - 2013.
DOI: 10.6073/pasta/b0ceb348c86245192b04558da822bbe6
title: Annual maximum summer NDVI (NDVImax) at 22 plots (8 sites) that are a part of the Cooperative Alaska Forest Inventory (CAFI) from 1986 - 2015.

description: This dataset contains annual plot-level measurements from 1986-2015 of annual maximum summer NDVI (NDVImax) from 22 plots (8 sites) that are a part of the Cooperative Alaska Forest Inventory (CAFI).
DOI: 10.6073/pasta/1cf571cbadc04f59701c9b109c2bdbff
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating Research (CiPEHR): Annual and growing season decomposition of a common substrate, 2008-2019

description: The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions: 1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C that comprises the bulk of the soil C pool influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange? We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. This data set is annual (September through September) and growing season (May through September) mass loss of cellulose filter paper at 0-10 cm and 10-20 cm (annual only) depths in the soil profile. Annual data is from September 2008 through September 2012 (4 years) and growing season data is from May through September in 2010 and 2011.
DOI: 10.6073/pasta/709b62200757502e49e11808024b7775
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating and Drying Research (DryPEHR): Annual and growing season decomposition of a common substrate, 2012-2019

description: This drying and warming experiment addresses the following questions: 1) Does ecosystem drying, warming and permafrost thaw cause a net release or uptake of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C that comprises the bulk of the soil C pool influence ecosystem C loss? 3) How do drying and warmign affect plant communities and ecosystem properties? We are answering these questions using a combined warming and drying experiment (DryPEHR), which is situated with the Carbon in Permafrost Experimental Heating Research (CiPEHR) project and located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. Warming treatment here refers to growing season air temperature warming (~1C) using open top chambers (OTC) combined with soil 'warming' using snow fences during the snow covered months. Drying is achieve using an automated pumping system that lowers the water table in the dry plots. Soil warming began in 2008; OTCs and drying in 2011.
DOI: 10.6073/pasta/a2fdd94757d2b747ba06c44b6af0c34b
title: Eight Mile Lake Research Watershed, Thaw Gradient: Annual decomposition of a common substrate, 2004-2019

description: In this larger study, we are asking the question: Is old carbon that comprises the bulk of the soil organic matter pool released in response to thawing of permafrost? We are answering this question by using a combination of field and laboratory experiments to measure radiocarbon isotope ratios in soil organic matter, soil respiration, and decomposition in tundra ecosystems. The objective of these proposed measurements is to develop a mechanistic understanding of the SOM sources contributing to C losses following permafrost thawing. We are making these measurements at an established tundra field site near Healy, Alaska in the foothills of the Alaska Range. Field measurements center on a natural experiment where permafrost has been observed to warm and thaw over the past several decades. This area represents a gradient of sites each with a different degree of change due to permafrost thawing. As such, this area is unique for addressing questions at the time and spatial scales relevant for change in arctic ecosystems. This data set is annual (September through September) mass loss of cellulose filter paper at 0-10 cm and 10-20 cm depths in the soil profile in sites with minimal, moderate, and extensive degrees of permafrost thaw.
DOI: 10.25345/c5jb7k
title: MassIVE MSV000086909 - P. falciparum Sucrose Gradient Fraction C1
title: Sucrose gradient fraction C1 using P. falciparum extract
DOI: 10.5281/zenodo.4540589
title: Data for "Tracking pre-mRNA maturation across subcellular compartments identifies developmental gene regulation through intron retention and nuclear anchoring"

description: Data for the manuscript titled "Tracking pre-mRNA maturation across subcellular compartments identifies developmental gene regulation through intron retention and nuclear anchoring."
DOI: 10.5281/zenodo.4540588
title: Data for "Tracking pre-mRNA maturation across subcellular compartments identifies developmental gene regulation through intron retention and nuclear anchoring"

description: Data for the manuscript titled "Tracking pre-mRNA maturation across subcellular compartments identifies developmental gene regulation through intron retention and nuclear anchoring."
DOI: 10.25919/6mnd-d658
title: MIR spectral library

description: Reflectance spectra collected of rocks and soils in the mid infrared wavelength range (2500 to 6000 nm; MIR) of the electromagnetic spectrum contain fingerprints of a wide range of rock forming and alteration minerals. The MIR is complementary to the visible-near infrared (VNIR; 380 to 1300 nm), shortwave infrared (SWIR; 1300 to 2500 nm), and thermal infrared (TIR; 6000 to 15000 nm) wavelength ranges. However, due to technological challenges with regards to proximal and remote hyperspectral sensing instruments, the MIR has been underutilised with regards to applications in mineral exploration and mining. With the advent of readily commercially available, hyperspectral handheld and drill core sensing instruments, such as portable Fourier transform infrared (pFTIR) spectrometers and the newly developed HyLogger4TM (Corescan Pty Ltd.), reflectance spectra of this relatively unexplored wavelength range become accessible to the mineral resources sector. Numerous methods exist for inferring mineralogy from hyperspectral reflectance spectra collected from, for example, drill core or field samples, ranging from automated or semi-automated unmixing algorithms that compare the collected reflectance spectra with a spectral reference library (e.g. https://mineralspectrallibraries.csiro.au/) to scripts targeting specific mineral groups and Gaussian deconvolution. This collection of MIR reflectance spectra aims to help improve the understanding of MIR spectral signatures of rock forming and vector minerals that will underpin the development and testing of methods for inferring, for example, relative mineral abundance, mineral composition, crystallinity, water content and grain size from the MIR wavelength range. The presented MIR reflectance spectra feature associated quantitative and semi-quantitative X-ray diffractometry, measured from various types of samples that were collected from a wide range of geological environments.
DOI: 10.6084/m9.figshare.13936985
title: JointDFE Supplementary Tables.xlsx

description: Supplementary tables for "Inferring genome-wide correlations of mutation fitness effects between populations"
DOI: 10.6084/m9.figshare.13936985.v1
title: JointDFE Supplementary Tables.xlsx

description: Supplementary tables for "Inferring genome-wide correlations of mutation fitness effects between populations"
DOI: 10.5519/qd.r8cm6vyp
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5519/qd.1w1axgrc
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.14052497
title: Rats show a preference for certain unfamiliar strains of rats

description: The data required to reproduce analyses reported in the associated paper (https://biorxiv.org/cgi/content/short/2021.02.18.431764v1).
DOI: 10.6084/m9.figshare.14052497.v1
title: Rats show a preference for certain unfamiliar strains of rats

description: The data required to reproduce analyses reported in the associated paper (https://biorxiv.org/cgi/content/short/2021.02.18.431764v1).
DOI: 10.6084/m9.figshare.11768574
title: The proximity filter: the effect of distance on media coverage of the Christchurch mosque attacks

description: The intense media coverage in New Zealand and Australia of the Christchurch mosque attacks exhibited significant disparity in editorial decision-making between the two countries. This research interrogates the different approaches taken in newsrooms and how these differences were manifested in broadcasts and publications. New Zealand media were focused largely on empathetic coverage of victims and resisted the alleged gunman's attempts to publicise his cause while their Australian counterparts showed no such reluctance and ran extended coverage of the alleged perpetrator, along with material ruled objectionable in New Zealand. It finds the editorial focus in each case exhibits the effect of proximity, identified in literature on empirical ethical decision-making as a factor in applied ethicality. The authors conclude that a proximity filter was used by New Zealand media who identified the victims as part of their own community, but the events of 15 March 2019 were seen as ‘foreign’ by Australian journalists who used perceived distance as justification for extremely graphic content.
DOI: 10.6084/m9.figshare.11768574.v1
title: The proximity filter: the effect of distance on media coverage of the Christchurch mosque attacks

description: The intense media coverage in New Zealand and Australia of the Christchurch mosque attacks exhibited significant disparity in editorial decision-making between the two countries. This research interrogates the different approaches taken in newsrooms and how these differences were manifested in broadcasts and publications. New Zealand media were focused largely on empathetic coverage of victims and resisted the alleged gunman's attempts to publicise his cause while their Australian counterparts showed no such reluctance and ran extended coverage of the alleged perpetrator, along with material ruled objectionable in New Zealand. It finds the editorial focus in each case exhibits the effect of proximity, identified in literature on empirical ethical decision-making as a factor in applied ethicality. The authors conclude that a proximity filter was used by New Zealand media who identified the victims as part of their own community, but the events of 15 March 2019 were seen as ‘foreign’ by Australian journalists who used perceived distance as justification for extremely graphic content.
DOI: 10.6084/m9.figshare.12981182
title: The Contexts of the Christchurch terror attacks: social science perspectives

description: The Contexts of the Christchurch terror attacks: social science perspectives
DOI: 10.6084/m9.figshare.11356847.v1
title: Extreme parallels: a corpus-driven analysis of ISIS and far-right discourse

description: In this study, we examine key psychological dimensions in the manifestos authored by the perpetrators of the Christchurch and Utøya massacres, the right-wing extremists Brenton Tarrant and Anders Breivik, and the ISIS propaganda magazine Rumiyah. All texts were authored and disseminated virtually with the purpose of attracting or consolidating support, and justifying violent, discriminatory actions. While right-wing supremacist and extremist Islamist discourses are ostensibly ideologically opposed, previous research has posited the existence of ideational and emotive commonalities. We approach this from a corpus-linguistic perspective, and employ the software LIWC2015 and Wmatrix to explore the dominant psychological dimensions, semantic categories and keywords in these texts. We identify elements that contribute to the construction of a narrative of hate, peril and urgency, and discuss differences in the imagery used to construct these meanings and to appeal to different audiences. Whilst our analysis supports the existence of commonalities in ideological content and discursive strategies, our results identify differences in the target of hate in right-wing supremacist discourse and we differentiate between primarily Islamophobic and racist motives. Finally, we also discuss the limitations inherent in employing these software tools to analyse discourse in the Web 2.0 era.
DOI: 10.6084/m9.figshare.12981182.v1
title: The Contexts of the Christchurch terror attacks: social science perspectives

description: The Contexts of the Christchurch terror attacks: social science perspectives
DOI: 10.6084/m9.figshare.11356847
title: Extreme parallels: a corpus-driven analysis of ISIS and far-right discourse

description: In this study, we examine key psychological dimensions in the manifestos authored by the perpetrators of the Christchurch and Utøya massacres, the right-wing extremists Brenton Tarrant and Anders Breivik, and the ISIS propaganda magazine Rumiyah. All texts were authored and disseminated virtually with the purpose of attracting or consolidating support, and justifying violent, discriminatory actions. While right-wing supremacist and extremist Islamist discourses are ostensibly ideologically opposed, previous research has posited the existence of ideational and emotive commonalities. We approach this from a corpus-linguistic perspective, and employ the software LIWC2015 and Wmatrix to explore the dominant psychological dimensions, semantic categories and keywords in these texts. We identify elements that contribute to the construction of a narrative of hate, peril and urgency, and discuss differences in the imagery used to construct these meanings and to appeal to different audiences. Whilst our analysis supports the existence of commonalities in ideological content and discursive strategies, our results identify differences in the target of hate in right-wing supremacist discourse and we differentiate between primarily Islamophobic and racist motives. Finally, we also discuss the limitations inherent in employing these software tools to analyse discourse in the Web 2.0 era.
DOI: 10.25345/c5dj5n
title: MassIVE MSV000086910 - Coupling of Cdc20 inhibition and activation by BubR1
title: Tight regulation of the APC/C-Cdc20 ubiquitin ligase that targets Cyclin B1 for degradation is important for mitotic fidelity. The spindle assembly checkpoint (SAC) inhibits Cdc20 through the mitotic checkpoint complex (MCC). In addition, phosphorylation of Cdc20 by Cyclin B1-Cdk1 independently inhibits APC/C-Cdc20 activation. This creates a conundrum for how Cdc20 gets activated prior to Cyclin B1 degradation. Here we show that the MCC component BubR1 harbours both Cdc20 inhibition and activation activities, allowing for cross-talk between the two Cdc20 inhibition pathways. Specifically BubR1 acts as a substrate specifier for PP2A-B56 to enable efficient Cdc20 dephosphorylation in the MCC. A mutant Cdc20 mimicking the dephosphorylated state escapes a mitotic checkpoint arrest arguing that restricting Cdc20 dephosphorylation to the MCC is important. Collectively our work reveals how Cdc20 can be dephosphorylated in the presence of Cyclin B1-Cdk1 activity without causing premature anaphase onset.
DOI: 10.25390/caryinstitute.13717972
title: Supplementary File 3 - Fischhoff et al. 2021

description: Supplementary table 3 describing the results of our various models. For each model described in the main text or supplementary file 1, we present the parameters determined from a grid search and the evaluation statistics from bootstrapping.
DOI: 10.25390/caryinstitute.13717972.v1
title: Supplementary File 3 - Fischhoff et al. 2021

description: Supplementary table 3 describing the results of our various models. For each model described in the main text or supplementary file 1, we present the parameters determined from a grid search and the evaluation statistics from bootstrapping.
DOI: 10.5281/zenodo.4549746
title: GNPS/MassIVE Public Data Index

description: This is an index and summarization of all public GNPS and MassIVE datasets. This includes open formats for MS data in mzXML and mzML format. This includes over 600K data files encompassing over 7 billion MS/MS spectra. Interactive versions can be found here: https://gnpspublic.herokuapp.com/gnps_public_openformats/massive_public_openformats
DOI: 10.5281/zenodo.4549745
title: GNPS/MassIVE Public Data Index

description: This is an index and summarization of all public GNPS and MassIVE datasets. This includes open formats for MS data in mzXML and mzML format. This includes over 600K data files encompassing over 7 billion MS/MS spectra. Interactive versions can be found here: https://gnpspublic.herokuapp.com/gnps_public_openformats/massive_public_openformats
DOI: 10.5281/zenodo.4517509
title: Models of ACE2 orthologs interacting with SARS-CoV-2 Spike RBD (canonical variant)

description: Predicted models of various orthologs of ACE2 (310 species) bound to SARS-CoV-2 Spike RBD. Models created using MODELLER and refined using HADDOCK. Include minimal glycans present in template structure (PDB ID: 6m0j). Dataset created to accompany manuscript submission, corresponding author Dr. Barbara Han.
description: New version adds models for Neovison vison, built from recently released ACE2 sequence on NCBI.
DOI: 10.5281/zenodo.4484785
title: Models of ACE2 orthologs interacting with SARS-CoV-2 Spike RBD (canonical variant)

description: Predicted models of various orthologs of ACE2 (310 species) bound to SARS-CoV-2 Spike RBD. Models created using MODELLER and refined using HADDOCK. Include minimal glycans present in template structure (PDB ID: 6m0j). Dataset created to accompany manuscript submission, corresponding author Dr. Barbara Han.
description: New version adds models for Neovison vison, built from recently released ACE2 sequence on NCBI.
DOI: 10.6084/m9.figshare.3761562.v1779
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.1184/r1/14039801
title: An electrically conductive silver-polyacrylamide-alginate hydrogel composite for soft electronics

description: This data and code were used to analyze an experimental result that is reported in the paper titled: "An electrically conductive silver-polyacrylamide-alginate hydrogel composite for soft electronics." The code here will measure the dorsiflexion angle in videos. The data contains source videos and data generated by the code.
DOI: 10.15482/usda.adc/1520870
title: Ladona fulva manual annotations on genome assembly Lful_1.0
DOI: 10.25345/c58v3r
title: MassIVE MSV000086911 - Metabolomics Workbench ST001257 - GNPS Nutrimetabolomics and DASH diet
title: b'Although health benefits of the Dietary Approaches to Stop Hypertension (DASH) diet are established, it is not understood which food compounds result in these benefits. We used a step-wise approach to identify unique compounds from individual foods of a DASH-style diet, determined if these Food-Specific Compounds (FSC) are detectable in urine, and then examined relationships between urinary FSC and blood pressure (BP). Nineteen subjects were randomized into 6-week controlled DASH-style diet interventions. Untargeted, LC/MS-based metabolomics was performed on 24-hour urine samples collected before and after each intervention and on 12 representative DASH-style foods.'