cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.e8fqmf
title: Occurrence Download

description: A dataset containing 240 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Sitophilus granarius (C.Linnaeus, 1758)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 240 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086915-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8gnjsr
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Longitarsus obliteratoides Gruev, 1973",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 41 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086916-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48366/r725331
title: Integrating Hyperspectral and Multispectral Data: Advances in Geological, Biodiversity, and Agricultural Applications

description: This comparison explores the integration of DESIS hyperspectral data with multispectral data for diverse applications, including geological analysis, plant biodiversity, and agricultural monitoring. It offers researchers a comprehensive view of how combined data can enhance accuracy and insight across various fields, helps students grasp the practical applications of hyperspectral technology, and supports industry professionals in utilizing these advancements for improved environmental and agricultural assessments. Early career scientists can benefit from understanding the latest methods and tools for integrating and analyzing remote sensing data.
DOI: 10.15468/dl.ke9a6n
title: Occurrence Download

description: A dataset containing 209 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eucalyptopsis C.T.White"
 ]
}

 The dataset includes 209 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086917-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a3h3hx
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nymphargus wileyi (Guayasamin, Bustamante, Almeida-Reinoso & Funk, 2006)"
 ]
}

 The dataset's 1 records were derived from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086889-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4vhmfa
title: Occurrence Download

description: A dataset containing 131866 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Buxales)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Geometry POLYGON((-30 25,50 25,50 75,-30 75,-30 25))"
 ]
}

 The dataset includes 131866 records from 892 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086897-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.7355342.v1
title: MOESM2 of Differential analysis of quantitative proteome and acetyl-proteome profiling between premenopausal and postmenopausal ovarian tissues

description: Additional file 2: Table S2. Differential protein expression in postmenopause and premenopause samples.
DOI: 10.6084/m9.figshare.7355360.v1
title: MOESM4 of Differential analysis of quantitative proteome and acetyl-proteome profiling between premenopausal and postmenopausal ovarian tissues

description: Additional file 4: Table S4. Differential acetyl-protein expression in postmenopause and premenopause samples.
DOI: 10.6084/m9.figshare.7355333
title: Additional file 3: of MicroRNA profiling analysis of developing berries for â Kyohoâ and its early-ripening mutant during berry ripening

description: Table S3. The mature sequenced of all known and novel miRNAs. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7355342
title: MOESM2 of Differential analysis of quantitative proteome and acetyl-proteome profiling between premenopausal and postmenopausal ovarian tissues

description: Additional file 2: Table S2. Differential protein expression in postmenopause and premenopause samples.
DOI: 10.6084/m9.figshare.22559969
title: Genome-wide DNA methylation analysis in families with multiple individuals diagnosed with schizophrenia and intellectual disability

description: Schizophrenia (SZ) and intellectual disability (ID) are both included in the continuum of neurodevelopmental disorders (NDDs). DNA methylation is known to be important in the occurrence of NDDs. The family study is conducive to eliminate the effects of relative epigenetic backgrounds, and to screen for differentially methylated positions (DMPs) and regions (DMRs) that are truly associated with NDDs. Four monozygotic twin families were recruited, and both twin individuals suffered from NDDs (either SZ, ID, or SZ plus ID). Genome-wide methylation analysis was performed in all samples and each family. DMPs and DMRs between NDD patients and unaffected individuals were identified. Functional and pathway enrichment analyses were performed on the annotated genes. Two significant DMPs annotated to <i>CYP2E1</i> were found in all samples. In Family One, 1476 DMPs mapped to 880 genes, and 162 DMRs overlapping with 153 unique genes were recognised. Our results suggested that the altered methylation levels of <i>FYN</i>, <i>STAT3</i>, <i>RAC1</i>, and <i>NR4A2</i> were associated with the development of SZ and ID. Neurodevelopment and the immune system may participate in the occurrence of SZ and ID. Our findings suggested that DNA methylation participated in the development of NDDs by affecting neurodevelopment and the immune system.
DOI: 10.6084/m9.figshare.22559969.v2
title: Genome-wide DNA methylation analysis in families with multiple individuals diagnosed with schizophrenia and intellectual disability

description: Schizophrenia (SZ) and intellectual disability (ID) are both included in the continuum of neurodevelopmental disorders (NDDs). DNA methylation is known to be important in the occurrence of NDDs. The family study is conducive to eliminate the effects of relative epigenetic backgrounds, and to screen for differentially methylated positions (DMPs) and regions (DMRs) that are truly associated with NDDs. Four monozygotic twin families were recruited, and both twin individuals suffered from NDDs (either SZ, ID, or SZ plus ID). Genome-wide methylation analysis was performed in all samples and each family. DMPs and DMRs between NDD patients and unaffected individuals were identified. Functional and pathway enrichment analyses were performed on the annotated genes. Two significant DMPs annotated to <i>CYP2E1</i> were found in all samples. In Family One, 1476 DMPs mapped to 880 genes, and 162 DMRs overlapping with 153 unique genes were recognised. Our results suggested that the altered methylation levels of <i>FYN</i>, <i>STAT3</i>, <i>RAC1</i>, and <i>NR4A2</i> were associated with the development of SZ and ID. Neurodevelopment and the immune system may participate in the occurrence of SZ and ID. Our findings suggested that DNA methylation participated in the development of NDDs by affecting neurodevelopment and the immune system.
DOI: 10.6084/m9.figshare.20462841
title: Stronger mutualistic interactions with arbuscular mycorrhizal fungi help Asteraceae invaders outcompete the phylogenetically related natives

description: New P 2022 data
Stronger mutualistic interactions with arbuscular mycorrhizal fungi help Asteraceae invaders outcompete the phylogenetically related natives
DOI: 10.6084/m9.figshare.7355345.v1
title: Additional file 4: of MicroRNA profiling analysis of developing berries for ‘Kyoho’ and its early-ripening mutant during berry ripening

description: Table S4. The identified miRNAs in ‘Fengzao’ and ‘Kyoho’, respectively. (XLSX 115 kb)
DOI: 10.34740/kaggle/dsv/7567906
title: Famous Youtube Cooking Channels Video Comments
DOI: 10.6084/m9.figshare.7355366
title: Additional file 6: of MicroRNA profiling analysis of developing berries for â Kyohoâ and its early-ripening mutant during berry ripening

description: Table S5. Target gene prediction results of all the miRNAs identified in this study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.20462347.v1
title: Additional file 1 of Pyogenic liver abscess-caused Klebsiella pneumoniae in a tertiary hospital in China in 2017: implication of hypervirulent carbapenem-resistant strains

description: Additional file 1. Primers, Mobile genetic element (MGE), Drug-resistance, Sequence type (ST), String test.
DOI: 10.6084/m9.figshare.24657254
title: Population pharmacokinetics of mycophenolic acid and dose optimisation in adult Chinese kidney transplant recipients

description: 1. This study aimed to establish a population pharmacokinetic (PPK) model of mycophenolic acid (MPA), quantify the effect of clinical factors and pharmacogenomics of MPA, and optimise the dosage for adult kidney transplant recipients. 2. One-hundred and four adult renal transplant patients were enrolled. The PPK model was established using the Phoenix<sup>®</sup> NMLE software and the stepwise methods were filtered for significant covariates. Monte Carlo simulations were performed to optimise the dosage regimen. 3. A two-compartment model with first-order absorption and elimination (including lag time) provided a more accurate description of MPA pharmacokinetics. Serum albumin (ALB) significantly affected the central apparent clearance (CL/F), whereas post-transplant time and creatinine clearance were associated with a central apparent volume of distribution (V/F). The estimated population values obtained by the final model were 17.5 L/h and 93.97 L for CL/F and V/F, respectively. Simulation results revealed that larger mycophenolate mofetil doses are required as the ALB concentration decreases. This study established a PPK model of MPA and validated it using various methods. ALB significantly affected CL/F and recommended optimal dose strategies were given based on the final model. These results provide a reference for the personalised therapy of MPA for kidney transplant patients.
DOI: 10.6084/m9.figshare.24657254.v1
title: Population pharmacokinetics of mycophenolic acid and dose optimisation in adult Chinese kidney transplant recipients

description: 1. This study aimed to establish a population pharmacokinetic (PPK) model of mycophenolic acid (MPA), quantify the effect of clinical factors and pharmacogenomics of MPA, and optimise the dosage for adult kidney transplant recipients. 2. One-hundred and four adult renal transplant patients were enrolled. The PPK model was established using the Phoenix<sup>®</sup> NMLE software and the stepwise methods were filtered for significant covariates. Monte Carlo simulations were performed to optimise the dosage regimen. 3. A two-compartment model with first-order absorption and elimination (including lag time) provided a more accurate description of MPA pharmacokinetics. Serum albumin (ALB) significantly affected the central apparent clearance (CL/F), whereas post-transplant time and creatinine clearance were associated with a central apparent volume of distribution (V/F). The estimated population values obtained by the final model were 17.5 L/h and 93.97 L for CL/F and V/F, respectively. Simulation results revealed that larger mycophenolate mofetil doses are required as the ALB concentration decreases. This study established a PPK model of MPA and validated it using various methods. ALB significantly affected CL/F and recommended optimal dose strategies were given based on the final model. These results provide a reference for the personalised therapy of MPA for kidney transplant patients.
DOI: 10.6084/m9.figshare.7355345
title: Additional file 4: of MicroRNA profiling analysis of developing berries for ‘Kyoho’ and its early-ripening mutant during berry ripening

description: Table S4. The identified miRNAs in ‘Fengzao’ and ‘Kyoho’, respectively. (XLSX 115 kb)
DOI: 10.6084/m9.figshare.21511677
title: Characteristics of immune cell infiltration in inflamed mucosa of ulcerative colitis patients, hub gene candidates and key pathways in intestinal macrophage.

description: Tissue RNA was isolated from fresh mouse colon sample by Trizol reagent. Total RNA (1 µg) was reverse-transcribed using a reverse transcriptase kit (TakaRa, cat. RR036A-1, Tokyo, Japan). Hieff® qPCR SYBR Green Master Mix (Yeasen Biotechnolog, cat. 11201ES03, Shanghai, China) was used for Real-time qPCR. The comparative cycle threshold (Ct) method (2−ΔΔCT) was used to calculate relative expression, β-actin was used as the internal reference. We evaluated immunostaining by multiplying the intensity score and proportion score. Intensity score according to the intensity of cell staining: 0 for no positive staining (negative), 1 for light yellow (weakly positive), 2 for brown (positive) and 3 for dark brown (strongly positive). Proportion score according to the percentage of positive cells: 1 for ≤25%, 2 for 26%-50%, 3 for 51%-75% and 4 points for &gt; 75%.
DOI: 10.6084/m9.figshare.7355351
title: MOESM3 of Differential analysis of quantitative proteome and acetyl-proteome profiling between premenopausal and postmenopausal ovarian tissues

description: Additional file 3: Table S3. Acetylated proteome analysis of ovarian tissues from perimenopausal and postmenopausal women by LCâ MS/MS using TMT quantification and antibody-affinity purification.
DOI: 10.6084/m9.figshare.23608890
title: supplementary file.xls

description: The dataset of Repeated vNOTES including  sociodemographic  and clinical features and FSFI index.
DOI: 10.6084/m9.figshare.7355366.v1
title: Additional file 6: of MicroRNA profiling analysis of developing berries for â Kyohoâ and its early-ripening mutant during berry ripening

description: Table S5. Target gene prediction results of all the miRNAs identified in this study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.13123333
title: The epidemic of erythromycin-resistant <i>Bordetella pertussis</i> with limited genome variation associated with pertussis resurgence in China

description: The resurgence of <i>Bordetella pertussis</i> infections leading to whooping cough is a concern in many parts of the world. The number of pertussis cases in China has increased significantly since 2013. In this study, whole-genome sequencing analysis was performed for 388 <i>B. pertussis</i> strains isolated in China from the 1970s to 2018, combining 594 published strains from around the world. This study revealed that lineage V diverged about 50 years ago in China, while lineage IV is dominant in the other countries. It also revealed that the erythromycin-resistant sub-lineages Va, Vb, and Vc with limited genomic variation emerged 11 ~ 12 years ago. These three sub-lineages were identified after the co-purified acellular vaccines (cp-ACVs) completely replaced the previous whole cell vaccines (WCVs) after the national immunization program of 2012. It suggests that the cp-ACVs cannot induce immunity that is potent enough to restrict the spread of the lineage V, antibiotic abuse further favors the spread of this lineage in China. These findings demand a reassessment of the immunization strategy and development of new vaccines in China to stop the resurgence and drug resistance of <i>B. pertussis</i>.
DOI: 10.6084/m9.figshare.23084055.v1
title: Additional file 5 of ISG15 targets glycosylated PD-L1 and promotes its degradation to enhance antitumor immune effects in lung adenocarcinoma

description: Additional file 5. Clinical cases treated with anti-PD-L1 mab.
DOI: 10.6084/m9.figshare.23084055
title: Additional file 5 of ISG15 targets glycosylated PD-L1 and promotes its degradation to enhance antitumor immune effects in lung adenocarcinoma

description: Additional file 5. Clinical cases treated with anti-PD-L1 mab.
DOI: 10.5281/zenodo.10605827
title: Interannual and seasonal migration patterns of wheat aphids across the Bohai Strait in eastern Asia based on ten years of monitoring data

description: The bird cherry-oat aphid (Rhopalosiphum padi) and the grain aphid (Sitobion miscanthi) are two destructive wheat pests that have caused severe economic losses in China's main wheat-producing regions. Although previous studies mainly focused on the population dynamics of wheat pests in wheat fields, little is known about the trans-sea migration of both wheat aphids in eastern China. Here, we conducted a 10-year monitoring from 2012 to 2021 for understanding the aerial migration patterns of both wheat aphids utilizing a suction trap on Beihuang Island (BH), a small island in the center of the Bohai Strait that serves as a seasonal insect migration pathway in eastern Asia. We also simulated the migration trajectories of these pests using the HYSPLIT model. Overall, a total of 6362 alatae S. miscanthi and 335 alatae R. padi were captured, and both wheat aphids exhibited regular comigration patterns across the sea during late April to late October each year.
DOI: 10.5281/zenodo.10605828
title: Interannual and seasonal migration patterns of wheat aphids across the Bohai Strait in eastern Asia based on ten years of monitoring data

description: The bird cherry-oat aphid (Rhopalosiphum padi) and the grain aphid (Sitobion miscanthi) are two destructive wheat pests that have caused severe economic losses in China's main wheat-producing regions. Although previous studies mainly focused on the population dynamics of wheat pests in wheat fields, little is known about the trans-sea migration of both wheat aphids in eastern China. Here, we conducted a 10-year monitoring from 2012 to 2021 for understanding the aerial migration patterns of both wheat aphids utilizing a suction trap on Beihuang Island (BH), a small island in the center of the Bohai Strait that serves as a seasonal insect migration pathway in eastern Asia. We also simulated the migration trajectories of these pests using the HYSPLIT model. Overall, a total of 6362 alatae S. miscanthi and 335 alatae R. padi were captured, and both wheat aphids exhibited regular comigration patterns across the sea during late April to late October each year.
DOI: 10.17028/rd.lboro.22559845
title: Supplementary information files for Microstructural engineering of a dual-phase Ti-Al-V-Fe alloy via in situ alloying during laser powder bed fusion

description: Supplementary files for article Microstructural engineering of a dual-phase Ti-Al-V-Fe alloy via in situ alloying during laser powder bed fusion
<br>
When Ti-6Al-4V is processed by laser powder bed fusion (L-PBF), acicular martensitic α’-Ti grains are formed within the columnar prior β-Ti grains, resulting in inferior mechanical properties. The application of blended powders in L-PBF enables to tailor the microstructures and obtain a mixture of α’ + β phases. In this work, we demonstrate an effective method to engineer the phase fraction of an L-PBF manufactured Ti alloy using blended powders consisting of Ti-6Al-4V and 3 wt% Fe particles. By varying laser parameters, the as-built microstructures transit from α’ dominated microstructure to a nearly complete β-dominant microstructure. High-speed operando X-ray diffraction during L-PBF processing combined with X-ray fluorescence and EBSD characterization allows for relating microstructure to the spatial distribution of the β-stabilizer Fe under the high cooling rates typical for L-PBF. The as-built microstructure containing large amounts of β phase achieves high strength and enhanced ductility without post-processing heat treatments.
DOI: 10.6084/m9.figshare.13646905.v1
title: Additional file 1 of Risk factors for postoperative recurrent tricuspid regurgitation after concomitant tricuspid annuloplasty during left heart surgery and the association between tricuspid annular circumference and secondary tricuspid regurgitation

description: Additional file 1. The availability of raw data and analysis.
DOI: 10.17028/rd.lboro.22559845.v1
title: Supplementary information files for Microstructural engineering of a dual-phase Ti-Al-V-Fe alloy via in situ alloying during laser powder bed fusion

description: Supplementary files for article Microstructural engineering of a dual-phase Ti-Al-V-Fe alloy via in situ alloying during laser powder bed fusion
<br>
When Ti-6Al-4V is processed by laser powder bed fusion (L-PBF), acicular martensitic α’-Ti grains are formed within the columnar prior β-Ti grains, resulting in inferior mechanical properties. The application of blended powders in L-PBF enables to tailor the microstructures and obtain a mixture of α’ + β phases. In this work, we demonstrate an effective method to engineer the phase fraction of an L-PBF manufactured Ti alloy using blended powders consisting of Ti-6Al-4V and 3 wt% Fe particles. By varying laser parameters, the as-built microstructures transit from α’ dominated microstructure to a nearly complete β-dominant microstructure. High-speed operando X-ray diffraction during L-PBF processing combined with X-ray fluorescence and EBSD characterization allows for relating microstructure to the spatial distribution of the β-stabilizer Fe under the high cooling rates typical for L-PBF. The as-built microstructure containing large amounts of β phase achieves high strength and enhanced ductility without post-processing heat treatments.
DOI: 10.6084/m9.figshare.13646905
title: Additional file 1 of Risk factors for postoperative recurrent tricuspid regurgitation after concomitant tricuspid annuloplasty during left heart surgery and the association between tricuspid annular circumference and secondary tricuspid regurgitation

description: Additional file 1. The availability of raw data and analysis.
DOI: 10.6084/m9.figshare.20462413
title: Additional file 1 of Predictive value of proteomic markers for advanced rectal cancer with neoadjuvant chemoradiotherapy

description: Additional file 1: Supplementary Table 1. Clinical features of serum samples for iTRAQ experiment. Supplementary Table 2. Clinical features of tested serum samples. Supplementary Table 3. List of proteins identified and quantified across all the individual sera samples. Supplementary Table 4. List of significant differential proteins between different groups identified by iTRAQ. Supplementary Table 5. The pepetides used for quantification: characteristics and performance. Supplementary Table 6. The importance of each feature in predition model.
DOI: 10.6084/m9.figshare.7356509
title: Complete mitochondrial genome of Japalura flaviceps: Deep insights into the phylogeny and gene rearrangements of Agamidae species

description: <b>Table S1 </b>The PCR amplification
primers used in this study.

<b>Table S2 </b>The best partitioning
schemes and nucleotide substitution models for mitochondrial data matrix.

<b>Fig. S1. </b>Inferred secondary
structures of tRNA genes in<i> Japalura
flaviceps</i> mitogenome.
DOI: 10.6084/m9.figshare.20462347
title: Additional file 1 of Pyogenic liver abscess-caused Klebsiella pneumoniae in a tertiary hospital in China in 2017: implication of hypervirulent carbapenem-resistant strains

description: Additional file 1. Primers, Mobile genetic element (MGE), Drug-resistance, Sequence type (ST), String test.