cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12204833
title: Taxonomic review of the Asian Horned Frogs (Amphibia: <i>Megophrys</i> Kuhl & Van Hasselt) of Northeast India and Bangladesh previously misidentified as <i>M. parva</i> (Boulenger), with descriptions of three new species

description: is currently considered to be among the most widely dispersed species within the genus, however, recent studies have provided compelling evidence that this species represents a complex of morphologically similar, deeply divergent taxa. The focus of this paper is to take a closer look at species from Northeast India (NEI) and Bangladesh that are currently, or were until recently, considered to represent <i>M. parva</i>, now comprising the <i>M</i>. (<i>Xenophrys</i>) <i>megacephala</i> species group. We investigate their troublesome taxonomic histories, identify hidden cryptic species diversity using morphological and molecular data, and resolve many of the historical misidentifications that have led to a proliferation of taxonomic confusion in this group. Molecular analyses extend the geographic distribution of the <i>M</i>. (<i>X</i>.) <i>megacephala</i> species group east into northern Myanmar based on available sequence data. A detailed redescription of the paralectotypes of <i>M. parva</i> is provided to better define this poorly known species. The geographic distributions of the taxonomically obscure species, <i>M. serchhipii</i> and <i>M. zunhebotoensis</i>, are extended far beyond their respective type localities, and both are considerably better defined taxonomically based on detailed descriptions of referred specimens, and comparison with relevant congeners. Significant geographic range extensions are also provided for the recently described species <i>M. oropedion</i> and <i>M. megacephala</i>. Three new species from the Indian states of Nagaland and Manipur are identified using a combination of morphological characters, supported by significant genetic divergence. Examination of historical specimen collections and scrutiny of published literature provide sufficient evidence to remove <i>M. parva</i> and <i>M. wuliangshanensis</i> from the checklist of Indian species. Previous records of <i>M. parva</i> from Bangladesh are demonstrated to represent <i>M. serchhipii</i>. Recent reports of <i>M. glandulosa</i> and <i>M. robusta</i> from Meghalaya are also revised and are considered to be based on misidentifications of known species from the state. The revised distributions of NEI’s small-sized horned frogs provide insights into the biogeography of the group. One of the newly described species known only from the high-elevation Dzükou Valley, Nagaland, might require immediate conservation action due to increased tourist activity at its type locality. http://www.zoobank.org/urn:lsid:zoobank.org:pub:CE06A188-88E4-44CD-86A4-A62DD902B0A5
DOI: 10.6084/m9.figshare.12204899.v1
title: guppy laterality data from Consistency in the strength of laterality in male, but not female, guppies across different behavioural contexts

description: Laterality, the division of brain functions into separate hemispheres, is widespread across animal taxa. Lateralized individuals exhibit cognitive advantages yet substantial variation in laterality exists, particularly between the sexes. Why variation is maintained is unknown as few studies consider differences in lateralized behaviours between the sexes, and their underlying selection pressures, across different contexts. We investigated if <i>Poecilia reticulata</i> exhibited sex differences in the direction, strength and consistency of lateralization. We assessed the turning preferences of individuals detouring around a barrier to view visual stimuli representative of different behavioural contexts: an artificial object of familiar colour, an opposite sex conspecific and a no stimulus control. While no sex differences were evident in the direction or strength of laterality, consistency in the strength of laterality varied between the sexes. Individuals of both sexes consistently detoured in one direction, but the strength of laterality exhibited by males was more predictable than females across contexts. This suggests that predictability of lateralization across ecologically relevant scenarios represents a key, but previously unexplored, source of variation between the sexes.
DOI: 10.6084/m9.figshare.12204833.v1
title: Taxonomic review of the Asian Horned Frogs (Amphibia: <i>Megophrys</i> Kuhl & Van Hasselt) of Northeast India and Bangladesh previously misidentified as <i>M. parva</i> (Boulenger), with descriptions of three new species

description: is currently considered to be among the most widely dispersed species within the genus, however, recent studies have provided compelling evidence that this species represents a complex of morphologically similar, deeply divergent taxa. The focus of this paper is to take a closer look at species from Northeast India (NEI) and Bangladesh that are currently, or were until recently, considered to represent <i>M. parva</i>, now comprising the <i>M</i>. (<i>Xenophrys</i>) <i>megacephala</i> species group. We investigate their troublesome taxonomic histories, identify hidden cryptic species diversity using morphological and molecular data, and resolve many of the historical misidentifications that have led to a proliferation of taxonomic confusion in this group. Molecular analyses extend the geographic distribution of the <i>M</i>. (<i>X</i>.) <i>megacephala</i> species group east into northern Myanmar based on available sequence data. A detailed redescription of the paralectotypes of <i>M. parva</i> is provided to better define this poorly known species. The geographic distributions of the taxonomically obscure species, <i>M. serchhipii</i> and <i>M. zunhebotoensis</i>, are extended far beyond their respective type localities, and both are considerably better defined taxonomically based on detailed descriptions of referred specimens, and comparison with relevant congeners. Significant geographic range extensions are also provided for the recently described species <i>M. oropedion</i> and <i>M. megacephala</i>. Three new species from the Indian states of Nagaland and Manipur are identified using a combination of morphological characters, supported by significant genetic divergence. Examination of historical specimen collections and scrutiny of published literature provide sufficient evidence to remove <i>M. parva</i> and <i>M. wuliangshanensis</i> from the checklist of Indian species. Previous records of <i>M. parva</i> from Bangladesh are demonstrated to represent <i>M. serchhipii</i>. Recent reports of <i>M. glandulosa</i> and <i>M. robusta</i> from Meghalaya are also revised and are considered to be based on misidentifications of known species from the state. The revised distributions of NEI’s small-sized horned frogs provide insights into the biogeography of the group. One of the newly described species known only from the high-elevation Dzükou Valley, Nagaland, might require immediate conservation action due to increased tourist activity at its type locality. http://www.zoobank.org/urn:lsid:zoobank.org:pub:CE06A188-88E4-44CD-86A4-A62DD902B0A5
DOI: 10.6084/m9.figshare.12204821.v1
title: Table S4

description: Type and distribution of chromosomal structural variation
DOI: 10.6084/m9.figshare.12204794
title: K2P

description: The K2P distances is used to compare the COI sequence differences between <i>A. aurora</i> and <i>A. nipponensis</i>.
DOI: 10.6084/m9.figshare.12204779
title: DataAssimilation_0.56deg_ens32_no2_Modellevel_2hourly_20080629-20080721.nc

description: Data assimilation analysis of NO2 concentrations derived from multi-constituent satellite data assimilation at 0.56-degree resolution
DOI: 10.6084/m9.figshare.12204791
title: Spatial genetic structure of black francolin (<i>Francolinus francolinus asiae</i>) in the North-Western Himalayan region based on mitochondrial control region

description: Due to specific habitat preferences and behavioural limitations, black francolin is not uniformly distributed across the northwestern Himalayan landscape, rather is confined to certain land mosaic. The habitable zones are further reduced due to several manmade threats as logging and forest fire leading to sparse distribution. Overall 54 samples were used for partial sequence analysis of mitochondrial control region. A well evident divergence pattern was observed as individuals collected from low altitude, terrai region significantly distanced from high altitude sampled individuals. Also, the individuals at lower elevation sites exhibited higher genetic diversity in comparison to the samples collected at higher elevations. This indicates that patchy distribution and low dispersal rate have resulted in fine-scale patterns of genetic diversity among the black francolin population. Further, habitat loss and forest fragmentation could lead to more small and isolated populations that could suffer from reduced genetic diversity and may be higher extinction rates.
DOI: 10.6084/m9.figshare.12204794.v1
title: K2P

description: The K2P distances is used to compare the COI sequence differences between <i>A. aurora</i> and <i>A. nipponensis</i>.
DOI: 10.6084/m9.figshare.12204788
title: Labels volume for making an overlay to check registrations to the MNI152NLin2009cAsym template

description: 1 - Cortical ribbon10 - CerebellumBoth generated from the MNI152NLin2009cAsym T1w image using Freesurfer<br><br>2 - Lateral ventricle <br>As described by the resampled Harvard-Oxford atlas provided in templateflow<br>3 - Thalamus <br>4 - Caudate5 - Putamen6, 7 - Pallidum8 - Hippocampus<br>9 - AmygdalaAs provided by the Multi-contrast PD25 atlas in LeadDBS<br><br>
DOI: 10.6084/m9.figshare.12204776
title: Table S2

description: Information and classification of<i> Aegilops tauschii</i>
DOI: 10.6084/m9.figshare.12204779.v1
title: DataAssimilation_0.56deg_ens32_no2_Modellevel_2hourly_20080629-20080721.nc

description: Data assimilation analysis of NO2 concentrations derived from multi-constituent satellite data assimilation at 0.56-degree resolution
DOI: 10.6084/m9.figshare.12204791.v1
title: Spatial genetic structure of black francolin (<i>Francolinus francolinus asiae</i>) in the North-Western Himalayan region based on mitochondrial control region

description: Due to specific habitat preferences and behavioural limitations, black francolin is not uniformly distributed across the northwestern Himalayan landscape, rather is confined to certain land mosaic. The habitable zones are further reduced due to several manmade threats as logging and forest fire leading to sparse distribution. Overall 54 samples were used for partial sequence analysis of mitochondrial control region. A well evident divergence pattern was observed as individuals collected from low altitude, terrai region significantly distanced from high altitude sampled individuals. Also, the individuals at lower elevation sites exhibited higher genetic diversity in comparison to the samples collected at higher elevations. This indicates that patchy distribution and low dispersal rate have resulted in fine-scale patterns of genetic diversity among the black francolin population. Further, habitat loss and forest fragmentation could lead to more small and isolated populations that could suffer from reduced genetic diversity and may be higher extinction rates.
DOI: 10.6084/m9.figshare.12204788.v1
title: Labels volume for making an overlay to check registrations to the MNI152NLin2009cAsym template

description: 1 - Cortical ribbon10 - CerebellumBoth generated from the MNI152NLin2009cAsym T1w image using Freesurfer<br><br>2 - Lateral ventricle <br>As described by the resampled Harvard-Oxford atlas provided in templateflow<br>3 - Thalamus <br>4 - Caudate5 - Putamen6, 7 - Pallidum8 - Hippocampus<br>9 - AmygdalaAs provided by the Multi-contrast PD25 atlas in LeadDBS<br><br>
DOI: 10.6084/m9.figshare.12204761
title: Table S3

description: Chromosome number and chromosome composition of SHW-L1 and its F2 hybrids
DOI: 10.6084/m9.figshare.12204764
title: The Regularity of Rhythmic Primes Influences Syntax Processing in Adults

description: Recent research has shown that auditory rhythmic stimulation improves subsequent syntax processing of speech in children with and without developmental language disorders. Sensitivity to grammatical errors is enhanced after regular rhythmic primes in comparison to irregular ones. Our present study investigated this rhythmic priming effect in healthy adults by using subtle grammatical errors as targets, aiming to fit with the high linguistic level of the participants. We also assessed whether participants’ sensitivity to rhythmic priming on syntax processing was related to self-reported rhythmic skills and musical habits. Participants listened to rhythmic regular or irregular primes followed by blocks of six grammatically correct or incorrect sentences. Participants provided grammaticality judgments on each of the sentences, and response accuracy was analyzed. Furthermore, participants filled out a questionnaire about their musical skills, listening habits and music experience. Results revealed better grammaticality processing after regular rhythmic primes in comparison to irregular ones in healthy adults. Moreover, self-reported individual characteristics related to (1) rhythmic processing and synchronization, (2) amount of daily exposure to music, and (3) social bonding, contributed to significantly predict the rhythmic priming effect. Our findings confirm the influence of temporal regularities of musical primes on subsequent syntax processing, even when syntax processing is automatized (as in healthy young adults), and they point to inter-individual differences modulating the strength of this priming effect. We discuss results within the framework of the Dynamic Attending Theory suggesting that regular rhythms orient attentional resources over time, improving the processing of event structures, including for speech.
DOI: 10.6084/m9.figshare.12204776.v1
title: Table S2

description: Information and classification of<i> Aegilops tauschii</i>
DOI: 10.6084/m9.figshare.12204761.v1
title: Table S3

description: Chromosome number and chromosome composition of SHW-L1 and its F2 hybrids
DOI: 10.6084/m9.figshare.12204764.v1
title: The Regularity of Rhythmic Primes Influences Syntax Processing in Adults

description: Recent research has shown that auditory rhythmic stimulation improves subsequent syntax processing of speech in children with and without developmental language disorders. Sensitivity to grammatical errors is enhanced after regular rhythmic primes in comparison to irregular ones. Our present study investigated this rhythmic priming effect in healthy adults by using subtle grammatical errors as targets, aiming to fit with the high linguistic level of the participants. We also assessed whether participants’ sensitivity to rhythmic priming on syntax processing was related to self-reported rhythmic skills and musical habits. Participants listened to rhythmic regular or irregular primes followed by blocks of six grammatically correct or incorrect sentences. Participants provided grammaticality judgments on each of the sentences, and response accuracy was analyzed. Furthermore, participants filled out a questionnaire about their musical skills, listening habits and music experience. Results revealed better grammaticality processing after regular rhythmic primes in comparison to irregular ones in healthy adults. Moreover, self-reported individual characteristics related to (1) rhythmic processing and synchronization, (2) amount of daily exposure to music, and (3) social bonding, contributed to significantly predict the rhythmic priming effect. Our findings confirm the influence of temporal regularities of musical primes on subsequent syntax processing, even when syntax processing is automatized (as in healthy young adults), and they point to inter-individual differences modulating the strength of this priming effect. We discuss results within the framework of the Dynamic Attending Theory suggesting that regular rhythms orient attentional resources over time, improving the processing of event structures, including for speech.
DOI: 10.6084/m9.figshare.12204740
title: Table S1.xlsx

description: High-density genetic map including FISH markers<br>
DOI: 10.6084/m9.figshare.12204719
title: Supplementary Material for: Systemic Inflammation Score as a Predictor of Pneumonia after Radical Resection of Gastric Cancer: Analysis of a Multi-Institutional Dataset

description: <b><i>Background:</i></b> Curative treatment for gastric cancer (GC) comprising gastrectomy with systematic lymph node dissection can result in postoperative complications. Postoperative pneumonia is sometimes fatal, like surgery-related complications such as anastomotic leakage. In this retrospective study, we analyzed a multi-institutional collaborative dataset with the aim of identifying predictors of postgastrectomy pneumonia. <b><i>Methods:</i></b> From a retrospective database of 3,484 patients who had undergone gastrectomy for GC at nine Japanese institutions between 2010 and 2014, 1,415 patients who met all eligibility criteria were identified as eligible for analysis. Predictive values of 31 candidate variables for postoperative pneumonia were assessed. <b><i>Results:</i></b> Forty-two patients (3.0%) had grade II or higher postoperative pneumonia. Preoperative systemic inflammation score (SIS) had the greatest area under the curve (0.655) for predicting postoperative pneumonia (optimal cutoff value = 2). The odds ratio (OR) of high SISs associated with postoperative pneumonia was 3.10 (95% confidence interval [CI], 1.54–6.07; <i>p</i> &lt; 0.001). Multivariate binomial logistic analysis identified high SIS as an independent risk factor for postoperative pneumonia (OR, 2.31; 95% CI, 1.19–4.48; <i>p</i> = 0.013). A forest plot revealed that ORs of high SISs were highest in female patients. <b><i>Conclusions:</i></b> Our findings indicate that the preoperative SIS may serve as a simple predictor of postgastrectomy pneumonia, assisting physicians’ efforts to take preventive measures against this complication.
DOI: 10.6084/m9.figshare.12204695.v1
title: Supplementary Material for: Macrophages and Fibroblasts Differentially Contribute to Tattoo Stability

description: <b><i>Background:</i></b> Little information is available about the complexity and function of skin cells contributing to the high stability of tattoos. It has been shown that dermal macrophages play an important role in the storage and maintenance of pigment particles. By contrast, the impact of dermal fibroblasts, forming the connective tissue of the skin, on the stability of the tattoo is not known. <b><i>Method:</i></b> In this study, we compared the cell number and the particle load in dermal macrophages versus dermal fibroblasts, isolated from tail skin of tattooed mice. <b><i>Results:</i></b> Microscopic analysis revealed that both cell populations contained the tattoo particles, although in largely different amounts. A small number of macrophages with high side scatter intensity contained a large quantity of pigment particles, whereas a high number of dermal fibroblasts harbored only a few pigment particles. Using the CD64<sup>dtr</sup> mouse model that allows for selective, diphtheria toxin-mediated depletion of macrophages, we have previously shown that macrophages hold the tattoo in place by capture-release and recapture cycles. In the tattooed skin of macrophage-depleted mice, the content of pigment particles in fibroblasts did not change; however, the total number of fibroblasts carrying particles increased. <b><i>Conclusion:</i></b> The present study demonstrates that dermal macrophages and fibroblasts contribute in different ways to the tattoo stability and further improves our knowledge on tattoo persistence.
DOI: 10.6084/m9.figshare.12204719.v1
title: Supplementary Material for: Systemic Inflammation Score as a Predictor of Pneumonia after Radical Resection of Gastric Cancer: Analysis of a Multi-Institutional Dataset

description: <b><i>Background:</i></b> Curative treatment for gastric cancer (GC) comprising gastrectomy with systematic lymph node dissection can result in postoperative complications. Postoperative pneumonia is sometimes fatal, like surgery-related complications such as anastomotic leakage. In this retrospective study, we analyzed a multi-institutional collaborative dataset with the aim of identifying predictors of postgastrectomy pneumonia. <b><i>Methods:</i></b> From a retrospective database of 3,484 patients who had undergone gastrectomy for GC at nine Japanese institutions between 2010 and 2014, 1,415 patients who met all eligibility criteria were identified as eligible for analysis. Predictive values of 31 candidate variables for postoperative pneumonia were assessed. <b><i>Results:</i></b> Forty-two patients (3.0%) had grade II or higher postoperative pneumonia. Preoperative systemic inflammation score (SIS) had the greatest area under the curve (0.655) for predicting postoperative pneumonia (optimal cutoff value = 2). The odds ratio (OR) of high SISs associated with postoperative pneumonia was 3.10 (95% confidence interval [CI], 1.54–6.07; <i>p</i> &lt; 0.001). Multivariate binomial logistic analysis identified high SIS as an independent risk factor for postoperative pneumonia (OR, 2.31; 95% CI, 1.19–4.48; <i>p</i> = 0.013). A forest plot revealed that ORs of high SISs were highest in female patients. <b><i>Conclusions:</i></b> Our findings indicate that the preoperative SIS may serve as a simple predictor of postgastrectomy pneumonia, assisting physicians’ efforts to take preventive measures against this complication.
DOI: 10.6084/m9.figshare.12204662
title: DataAssimilation_0.56deg_ens64_no2_Modellevel_2hourly_20080629-20080721.nc

description: Data assimilation analysis of NO2 concentrations derived from multi-constituent satellite data assimilation at 0.56-degree resolution
DOI: 10.6084/m9.figshare.12204662.v1
title: DataAssimilation_0.56deg_ens64_no2_Modellevel_2hourly_20080629-20080721.nc

description: Data assimilation analysis of NO2 concentrations derived from multi-constituent satellite data assimilation at 0.56-degree resolution
DOI: 10.26180/5ea7e0b0295b0
title: 16s_Fish identified sample library

description: This is the identified sample library containing little penguin faecal samples with numbers of sequence reads for each fish species identified.
DOI: 10.6084/m9.figshare.12204431
title: Poverty threat on attentional bias

description: utilized to study about Poverty Stereotype Threat effects on Attentional Bias toward Poverty- and Wealth-related Stimuli in Individuals from Different Income Level Families
DOI: 10.6084/m9.figshare.12204380
title: Microbial processing of plant remains is co-limited by multiple nutrients in global grasslands

description: Dataset of "Microbial processing of plant remains is co-limited by multiple nutrients in global grasslands", published in Global Change Biology