cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26990752
title: Additional file 9 of Integrated small RNA, mRNA and protein omics reveal a miRNA network orchestrating metabolic maturation of the developing human heart

description: Additional file 9. Abundance of proteins detected across all 3 samples of 10 weeks old fetal hearts.
DOI: 10.6084/m9.figshare.26990752.v1
title: Additional file 9 of Integrated small RNA, mRNA and protein omics reveal a miRNA network orchestrating metabolic maturation of the developing human heart

description: Additional file 9. Abundance of proteins detected across all 3 samples of 10 weeks old fetal hearts.
DOI: 10.6084/m9.figshare.26990767.v1
title: Additional file 14 of Integrated small RNA, mRNA and protein omics reveal a miRNA network orchestrating metabolic maturation of the developing human heart

description: Additional file 14. Reporter metabolites analysis results (metabolites).
DOI: 10.6084/m9.figshare.26990770
title: Additional file 15 of Integrated small RNA, mRNA and protein omics reveal a miRNA network orchestrating metabolic maturation of the developing human heart

description: Additional file 15. Reporter metabolites analysis results (subsystems).
DOI: 10.6084/m9.figshare.26990770.v1
title: Additional file 15 of Integrated small RNA, mRNA and protein omics reveal a miRNA network orchestrating metabolic maturation of the developing human heart

description: Additional file 15. Reporter metabolites analysis results (subsystems).
DOI: 10.6084/m9.figshare.26990773
title: Additional file 16 of Integrated small RNA, mRNA and protein omics reveal a miRNA network orchestrating metabolic maturation of the developing human heart

description: Additional file 16. Reporter metabolite analysis results for control gene sets. (6200 randomally selected mRNAs, 6200 random non-targets, all non-targets).
DOI: 10.6084/m9.figshare.26990773.v1
title: Additional file 16 of Integrated small RNA, mRNA and protein omics reveal a miRNA network orchestrating metabolic maturation of the developing human heart

description: Additional file 16. Reporter metabolite analysis results for control gene sets. (6200 randomally selected mRNAs, 6200 random non-targets, all non-targets).
DOI: 10.6084/m9.figshare.26990776
title: Additional file 17 of Integrated small RNA, mRNA and protein omics reveal a miRNA network orchestrating metabolic maturation of the developing human heart

description: Additional file 17. Small RNA-seq expression profiles of uni-mapped genes annotated with COMPSRA.
DOI: 10.6084/m9.figshare.26990755
title: Additional file 10 of Integrated small RNA, mRNA and protein omics reveal a miRNA network orchestrating metabolic maturation of the developing human heart

description: Additional file 10. Abundance of proteins detected across all 3 samples of 18 weeks old fetal hearts.
DOI: 10.6084/m9.figshare.26990758
title: Additional file 11 of Integrated small RNA, mRNA and protein omics reveal a miRNA network orchestrating metabolic maturation of the developing human heart

description: Additional file 11 Significant differentially abundant proteins (P value &lt; 0.05) identified as miRNA targets.
DOI: 10.6084/m9.figshare.26990776.v1
title: Additional file 17 of Integrated small RNA, mRNA and protein omics reveal a miRNA network orchestrating metabolic maturation of the developing human heart

description: Additional file 17. Small RNA-seq expression profiles of uni-mapped genes annotated with COMPSRA.
DOI: 10.6084/m9.figshare.26990755.v1
title: Additional file 10 of Integrated small RNA, mRNA and protein omics reveal a miRNA network orchestrating metabolic maturation of the developing human heart

description: Additional file 10. Abundance of proteins detected across all 3 samples of 18 weeks old fetal hearts.
DOI: 10.6084/m9.figshare.26990758.v1
title: Additional file 11 of Integrated small RNA, mRNA and protein omics reveal a miRNA network orchestrating metabolic maturation of the developing human heart

description: Additional file 11 Significant differentially abundant proteins (P value &lt; 0.05) identified as miRNA targets.
DOI: 10.6084/m9.figshare.26990761
title: Additional file 12 of Integrated small RNA, mRNA and protein omics reveal a miRNA network orchestrating metabolic maturation of the developing human heart

description: Additional file 12. Human-GEM derived get set collection metabolite level.
DOI: 10.6084/m9.figshare.26990761.v1
title: Additional file 12 of Integrated small RNA, mRNA and protein omics reveal a miRNA network orchestrating metabolic maturation of the developing human heart

description: Additional file 12. Human-GEM derived get set collection metabolite level.
DOI: 10.6084/m9.figshare.26990764
title: Additional file 13 of Integrated small RNA, mRNA and protein omics reveal a miRNA network orchestrating metabolic maturation of the developing human heart

description: Additional file 13. Human-GEM derived get set collection subsystem level.
DOI: 10.6084/m9.figshare.26990764.v1
title: Additional file 13 of Integrated small RNA, mRNA and protein omics reveal a miRNA network orchestrating metabolic maturation of the developing human heart

description: Additional file 13. Human-GEM derived get set collection subsystem level.
DOI: 10.6084/m9.figshare.26990794
title: Additional file 1 of Multi-site microbiota alteration is a hallmark of kidney stone formation

description: Additional file 1. Supplementary Data.
DOI: 10.6084/m9.figshare.26990794.v1
title: Additional file 1 of Multi-site microbiota alteration is a hallmark of kidney stone formation

description: Additional file 1. Supplementary Data.
DOI: 10.6084/m9.figshare.26990800
title: Additional file 1 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 1: Supplementary Table S1. Genomic Islands identified in the Escherichia coli strain CEC15 genome by Gipsy software.
DOI: 10.6084/m9.figshare.26990800.v1
title: Additional file 1 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 1: Supplementary Table S1. Genomic Islands identified in the Escherichia coli strain CEC15 genome by Gipsy software.
DOI: 10.6084/m9.figshare.26990803
title: Additional file 2 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 2: Supplementary Table S2. Prophages regions identified in the Escherichia coli strain CEC15 genome by PHASTER tool.
DOI: 10.6084/m9.figshare.26990803.v1
title: Additional file 2 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 2: Supplementary Table S2. Prophages regions identified in the Escherichia coli strain CEC15 genome by PHASTER tool.
DOI: 10.6084/m9.figshare.26990806
title: Additional file 3 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 3: Supplementary Table S3. Genomic Islands identified in the Escherichia coli strain Nissle 1917 genome by Gipsy software
DOI: 10.6084/m9.figshare.26990806.v1
title: Additional file 3 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 3: Supplementary Table S3. Genomic Islands identified in the Escherichia coli strain Nissle 1917 genome by Gipsy software
DOI: 10.6084/m9.figshare.26990809
title: Additional file 4 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 4: Supplementary Table S4. Prophages regions identified in the Escherichia coli strain Nissle1917 genome by PHASTER tool.
DOI: 10.6084/m9.figshare.26990809.v1
title: Additional file 4 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 4: Supplementary Table S4. Prophages regions identified in the Escherichia coli strain Nissle1917 genome by PHASTER tool.
DOI: 10.6084/m9.figshare.26990812
title: Additional file 5 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 5: Supplementary Table S5. Putative insertion sequence family predicted in Escherichia coli CEC15 genome using ISSaga tool.
DOI: 10.6084/m9.figshare.26990812.v1
title: Additional file 5 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 5: Supplementary Table S5. Putative insertion sequence family predicted in Escherichia coli CEC15 genome using ISSaga tool.
DOI: 10.6084/m9.figshare.26990815
title: Additional file 6 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 6: Supplementary Table S6. Putative insertion sequence family predicted in Escherichia coli EcN genome using ISSaga tool.
DOI: 10.6084/m9.figshare.26990815.v1
title: Additional file 6 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 6: Supplementary Table S6. Putative insertion sequence family predicted in Escherichia coli EcN genome using ISSaga tool.
DOI: 10.6084/m9.figshare.26990824
title: Additional file 9 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 9: Supplementaty Table S7. Genes involved in resistance to antibiotic mechanisms in Escherichia coli CEC15.
DOI: 10.6084/m9.figshare.26990824.v1
title: Additional file 9 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 9: Supplementaty Table S7. Genes involved in resistance to antibiotic mechanisms in Escherichia coli CEC15.
DOI: 10.6084/m9.figshare.26990827
title: Additional file 10 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 10: Supplementary Table S8. Genes involved in resistance to antibiotic mechanisms in Escherichia coli Nissle 1917.
DOI: 10.6084/m9.figshare.26990827.v1
title: Additional file 10 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 10: Supplementary Table S8. Genes involved in resistance to antibiotic mechanisms in Escherichia coli Nissle 1917.
DOI: 10.6084/m9.figshare.26990833
title: Additional file 12 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 12: Supplementary Table S10. Proteins of Escherichia coli CEC15 and EcN with high adhesin profile probability
DOI: 10.6084/m9.figshare.26990833.v1
title: Additional file 12 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 12: Supplementary Table S10. Proteins of Escherichia coli CEC15 and EcN with high adhesin profile probability
DOI: 10.6084/m9.figshare.26990830
title: Additional file 11 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 11: Supplementary Table S9. Metabolic profilling
DOI: 10.6084/m9.figshare.26990830.v1
title: Additional file 11 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 11: Supplementary Table S9. Metabolic profilling
DOI: 10.6084/m9.figshare.26990839
title: Additional file 14 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 14: Supplementary Table S11. Proteins identification of pre-shearing and post-shearing samples of E. coli CEC15 and E. coli Nissle 1917
DOI: 10.6084/m9.figshare.26990839.v1
title: Additional file 14 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 14: Supplementary Table S11. Proteins identification of pre-shearing and post-shearing samples of E. coli CEC15 and E. coli Nissle 1917
DOI: 10.6084/m9.figshare.26990848
title: Additional file 17 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 17: Supplementary table S12. Number of OTUs per sample at the genus level.
DOI: 10.6084/m9.figshare.26990848.v1
title: Additional file 17 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 17: Supplementary table S12. Number of OTUs per sample at the genus level.
DOI: 10.6084/m9.figshare.26990851
title: Additional file 18 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 18: Supplementary Table S13. Primers used in this study
DOI: 10.6084/m9.figshare.26990851.v1
title: Additional file 18 of Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

description: Additional file 18: Supplementary Table S13. Primers used in this study
DOI: 10.6084/m9.figshare.26990863
title: Additional file 2 of The construction of a testis transcriptional cell atlas from embryo to adult reveals various somatic cells and their molecular roles

description: Additional file 2: The differentially expressed genes for each of cell-type clusters
DOI: 10.6084/m9.figshare.26990863.v1
title: Additional file 2 of The construction of a testis transcriptional cell atlas from embryo to adult reveals various somatic cells and their molecular roles

description: Additional file 2: The differentially expressed genes for each of cell-type clusters
DOI: 10.6084/m9.figshare.26990869.v1
title: Additional file 3 of The construction of a testis transcriptional cell atlas from embryo to adult reveals various somatic cells and their molecular roles

description: Additional file 3: Degree centrality and p-values for each node of WGCN of the integrated data
DOI: 10.6084/m9.figshare.26990872.v1
title: Additional file 4 of The construction of a testis transcriptional cell atlas from embryo to adult reveals various somatic cells and their molecular roles

description: Additional file 4: Paracrine cell-cell communication among all cell types in scRNA-seq profiles
DOI: 10.6084/m9.figshare.26990878.v1
title: Additional file 6 of The construction of a testis transcriptional cell atlas from embryo to adult reveals various somatic cells and their molecular roles

description: Additional file 6: Degree centrality in the weighted L-R interaction network
DOI: 10.6084/m9.figshare.26990869
title: Additional file 3 of The construction of a testis transcriptional cell atlas from embryo to adult reveals various somatic cells and their molecular roles

description: Additional file 3: Degree centrality and p-values for each node of WGCN of the integrated data
DOI: 10.6084/m9.figshare.26990872
title: Additional file 4 of The construction of a testis transcriptional cell atlas from embryo to adult reveals various somatic cells and their molecular roles

description: Additional file 4: Paracrine cell-cell communication among all cell types in scRNA-seq profiles
DOI: 10.6084/m9.figshare.26990875
title: Additional file 5 of The construction of a testis transcriptional cell atlas from embryo to adult reveals various somatic cells and their molecular roles

description: Additional file 5: The details of all somatic and germ cells L-R interactions
DOI: 10.6084/m9.figshare.26990878
title: Additional file 6 of The construction of a testis transcriptional cell atlas from embryo to adult reveals various somatic cells and their molecular roles

description: Additional file 6: Degree centrality in the weighted L-R interaction network
DOI: 10.6084/m9.figshare.26990875.v1
title: Additional file 5 of The construction of a testis transcriptional cell atlas from embryo to adult reveals various somatic cells and their molecular roles

description: Additional file 5: The details of all somatic and germ cells L-R interactions
DOI: 10.6084/m9.figshare.26990890
title: Additional file 3 of A novel approach to risk exposure and epigenetics—the use of multidimensional context to gain insights into the early origins of cardiometabolic and neurocognitive health

description: Additional file 3. List of CpGs representative of gwDNAm Components 1-20.
DOI: 10.6084/m9.figshare.26990890.v1
title: Additional file 3 of A novel approach to risk exposure and epigenetics—the use of multidimensional context to gain insights into the early origins of cardiometabolic and neurocognitive health

description: Additional file 3. List of CpGs representative of gwDNAm Components 1-20.
DOI: 10.5281/zenodo.13748238
title: WASP12b TESS sector 71 & 72 Fitting Results

description: File 1 is the phase curve fitting result of WASP12b from TESS sector 71 and 72,

FIle 2 is the transits and occultations from full-phase fitting of WASP12b from all TESS sectors, sorted in chronological order.
DOI: 10.5281/zenodo.13748237
title: WASP12b TESS sector 71 & 72 Fitting Results

description: File 1 is the phase curve fitting result of WASP12b from TESS sector 71 and 72,

FIle 2 is the transits and occultations from full-phase fitting of WASP12b from all TESS sectors, sorted in chronological order.
DOI: 10.6084/m9.figshare.26990914
title: Additional file 8 of Molecular analyses of zebrafish V0v spinal interneurons and identification of transcriptional regulators downstream of Evx1 and Evx2 in these cells

description: Additional file 8: Supplementary Table 4. Gene-Specific Analysis of Differential Expression in 27 h Tg(hmx CNEIII:cos:Gal4-VP16,UAS:EGFP)SU41-expressing V1 and dI2 Spinal Cord Interneurons Isolated From Uninjected Control and hmx2;hmx3a Double Morphant Embryos. Gene-Specific Analysis (GSA) was performed to analyze differential gene expression in V1 and dI2 spinal cord interneurons between 27 h uninjected control and hmx2;hmx3a double morphant samples (see Methods). Column A lists the gene symbol. Note that skor2, neff1, isl1a, pou2f2a, pou2f2b and zfhx3b genes returned previous gene names in the Lawson annotation. For ease of comparison, the current gene names shown in this paper are given in column A, with the Lawson gene symbols shown in parentheses. Column B provides the P-value for the comparison. This has not been corrected for multiple testing. Column C provides the P-value corrected for multiple testing by the application of the False Discovery Rate (FDR) Benjamini Hochberg method (46). Column D shows the ratio of the least squares mean reads for the antecedent (first population, column F) versus the consequent (second population, column G) population in the comparison. Column E shows the fold-change. The fold-change is converted from the ratio values in column D. When the ratio in column D is greater than 1, the fold-change in column E is identical to the ratio in column D. When the ratio in column D is less than 1, the fold-change in column E is calculated using the formula: -1/ratio. Each row corresponds to a distinct gene symbol. Each sheet has been sorted by the fold-change value in column E, from smallest to largest value. Consequently, negative fold-change values are shown at the top of the sheet, with positive fold-change values at the bottom of the sheet. Negative fold-change values occur when the least squares mean reads for the antecedent (first population in the comparison, column F) is less than the least squares mean reads for the consequent (second population in the comparison, column G), and so expression of that gene is upregulated in the consequent (second) population in the comparison. In contrast, positive fold-change values occur when the least squares mean reads for the antecedent (first population in the comparison, column F) is greater than the least squares mean reads for the consequent (second population in the comparison, column G), and so expression of that gene is upregulated in the antecedent (first) population in the comparison.
DOI: 10.6084/m9.figshare.26990914.v1
title: Additional file 8 of Molecular analyses of zebrafish V0v spinal interneurons and identification of transcriptional regulators downstream of Evx1 and Evx2 in these cells

description: Additional file 8: Supplementary Table 4. Gene-Specific Analysis of Differential Expression in 27 h Tg(hmx CNEIII:cos:Gal4-VP16,UAS:EGFP)SU41-expressing V1 and dI2 Spinal Cord Interneurons Isolated From Uninjected Control and hmx2;hmx3a Double Morphant Embryos. Gene-Specific Analysis (GSA) was performed to analyze differential gene expression in V1 and dI2 spinal cord interneurons between 27 h uninjected control and hmx2;hmx3a double morphant samples (see Methods). Column A lists the gene symbol. Note that skor2, neff1, isl1a, pou2f2a, pou2f2b and zfhx3b genes returned previous gene names in the Lawson annotation. For ease of comparison, the current gene names shown in this paper are given in column A, with the Lawson gene symbols shown in parentheses. Column B provides the P-value for the comparison. This has not been corrected for multiple testing. Column C provides the P-value corrected for multiple testing by the application of the False Discovery Rate (FDR) Benjamini Hochberg method (46). Column D shows the ratio of the least squares mean reads for the antecedent (first population, column F) versus the consequent (second population, column G) population in the comparison. Column E shows the fold-change. The fold-change is converted from the ratio values in column D. When the ratio in column D is greater than 1, the fold-change in column E is identical to the ratio in column D. When the ratio in column D is less than 1, the fold-change in column E is calculated using the formula: -1/ratio. Each row corresponds to a distinct gene symbol. Each sheet has been sorted by the fold-change value in column E, from smallest to largest value. Consequently, negative fold-change values are shown at the top of the sheet, with positive fold-change values at the bottom of the sheet. Negative fold-change values occur when the least squares mean reads for the antecedent (first population in the comparison, column F) is less than the least squares mean reads for the consequent (second population in the comparison, column G), and so expression of that gene is upregulated in the consequent (second) population in the comparison. In contrast, positive fold-change values occur when the least squares mean reads for the antecedent (first population in the comparison, column F) is greater than the least squares mean reads for the consequent (second population in the comparison, column G), and so expression of that gene is upregulated in the antecedent (first) population in the comparison.
DOI: 10.6084/m9.figshare.26990917
title: Additional file 1 of Evidence of development of underutilised crops and their ecosystem services in Europe: a systematic mapping approach

description: Additional file 1. ROSES for Systematic Map Report. The completed ROSES form required to accompany systematic maps according to the CEE guidelines.
DOI: 10.6084/m9.figshare.26990917.v1
title: Additional file 1 of Evidence of development of underutilised crops and their ecosystem services in Europe: a systematic mapping approach

description: Additional file 1. ROSES for Systematic Map Report. The completed ROSES form required to accompany systematic maps according to the CEE guidelines.
DOI: 10.6084/m9.figshare.26990923
title: Additional file 2 of Evidence of development of underutilised crops and their ecosystem services in Europe: a systematic mapping approach

description: Additional file 2. Evidence Synthesis Search Strings. A detailed breakdown of search string development including: Crop; search terms used; number of hits; and, date searched.