cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ngrxcp
title: Occurrence Download

description: A dataset containing 1798995 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Betula L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1798995 records from 3253 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005272-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ufeepv
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tropidodipsas fasciata Günther, 1858"
 ]
}

 The dataset includes 101 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003120-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26364496
title: Supplementary Figure 7

description: Data from Supplementary Figure 7
DOI: 10.6084/m9.figshare.26364496.v1
title: Supplementary Figure 7

description: Data from Supplementary Figure 7
DOI: 10.6084/m9.figshare.26364496.v2
title: Supplementary Figure 7

description: Data from Supplementary Figure 7
DOI: 10.15468/dl.ksafdd
title: Occurrence Download

description: A dataset containing 11653 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Halenia Borkh."
 ]
}

 The dataset includes 11653 records from 266 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003121-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rgyten
title: Occurrence Download

description: A dataset containing 619 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Choloepus hoffmanni Peters, 1858",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 619 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003122-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4kp9vq
title: Occurrence Download

description: A dataset containing 14252 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Actualización de la base de datos de hongos macroscópicos de Jalisco"
 ]
}

 The dataset includes 14252 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034879-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cien6f
title: Occurrence Download

description: A dataset containing 3463 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Didelphis marsupialis Linnaeus, 1758",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3463 records from 155 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003123-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.92nclb
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003125-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jjug87
title: Occurrence Download

description: A dataset containing 19159 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hackelia Opiz"
 ]
}

 The dataset includes 19159 records from 260 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003124-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.shfr85
title: Occurrence Download

description: A dataset containing 49729 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Buteo buteo (Linnaeus, 1758)",
 "Year 2000-2001"
 ]
}

 The dataset includes 49729 records from 276 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034878-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q5d3mp
title: Occurrence Download

description: A dataset containing 7530 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Garrya Douglas ex Lindl."
 ]
}

 The dataset includes 7530 records from 194 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003128-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.ifxqtxsj
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (369 records)
DOI: 10.15468/dl.6iltev
title: Occurrence Download

description: A dataset containing 729 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Zygophyllum fabago L.",
 "TaxonKey is Zygophyllum fabago L.",
 "TaxonKey is Zygophyllum fabago L.",
 "TaxonKey is Zygophyllum fabago L.",
 "TaxonKey is Zygophyllum fabago L."
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 729 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010330-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m7yryx
title: Occurrence Download

description: A dataset containing 1781 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Year is 1968",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 1781 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007419-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30084322
title: Microscopy images documenting cellular morphology and infection phenotypes of wild-type and attenuated HCV variants

description: Immunostaining of Huh7.5 cell infected with HCV variants or WT at 2, 4 and 6 days<br>post infection. Cells were stained with HCV-positive serum and anti-human 488<br>Alexa fluor as secondary antibody and visualized by fluorescence microscopy. Green– HCV infection, blue – nuclei (DAPI).<br>Invasion/migration experiment: WT-infected and HCVmut7-infected cells were seeded in<br>inserts on Matrigel for 24 hours and then fixated. Filters were stained with crystal<br>violet. The cells that invaded the lower side on the filters were counted.<br>Matrix degradation assay: WT-infected and HCVmut7-infected cells were plated on Alexa 488 labelled Gelatine for<br>72 hours and then fixated. Degradation was analysed by quantifying the average<br>degraded area per field using ImageJ software and normalized to the number of cells<br>in each field.
DOI: 10.6084/m9.figshare.30084322.v4
title: Microscopy images documenting cellular morphology and infection phenotypes of wild-type and attenuated HCV variants

description: Immunostaining of Huh7.5 cell infected with HCV variants or WT at 2, 4 and 6 days<br>post infection. Cells were stained with HCV-positive serum and anti-human 488<br>Alexa fluor as secondary antibody and visualized by fluorescence microscopy. Green– HCV infection, blue – nuclei (DAPI).<br>Invasion/migration experiment: WT-infected and HCVmut7-infected cells were seeded in<br>inserts on Matrigel for 24 hours and then fixated. Filters were stained with crystal<br>violet. The cells that invaded the lower side on the filters were counted.<br>Matrix degradation assay: WT-infected and HCVmut7-infected cells were plated on Alexa 488 labelled Gelatine for<br>72 hours and then fixated. Degradation was analysed by quantifying the average<br>degraded area per field using ImageJ software and normalized to the number of cells<br>in each field.
DOI: 10.6084/m9.figshare.30084322.v3
title: Microscopy images documenting cellular morphology and infection phenotypes of wild-type and attenuated HCV variants, as presented in this article

description: Immunostaining of Huh7.5 cell infected with HCV variants or WT at 2, 4 and 6 days<br>post infection. Cells were stained with HCV-positive serum and anti-human 488<br>Alexa fluor as secondary antibody and visualized by fluorescence microscopy. Green– HCV infection, blue – nuclei (DAPI).<br>Invasion/migration experiment: WT-infected and HCVmut7-infected cells were seeded in<br>inserts on Matrigel for 24 hours and then fixated. Filters were stained with crystal<br>violet. The cells that invaded the lower side on the filters were counted.<br>Matrix degradation assay: WT-infected and HCVmut7-infected cells were plated on Alexa 488 labelled Gelatine for<br>72 hours and then fixated. Degradation was analysed by quantifying the average<br>degraded area per field using ImageJ software and normalized to the number of cells<br>in each field.
DOI: 10.5281/zenodo.16935846
title: Kinesin-induced buckling reveals limits of microtubule self-repair

description: Dataset contains a compilation of the curvature analysis code and the source data underlying the main and extended data figures for the manuscript titled 'Kinesin-induced buckling reveals limits of microtubule self-repair'.
DOI: 10.5281/zenodo.16935847
title: Kinesin-induced buckling reveals limits of microtubule self-repair

description: Dataset contains a compilation of the curvature analysis code and the source data underlying the main and extended data figures for the manuscript titled 'Kinesin-induced buckling reveals limits of microtubule self-repair'.
DOI: 10.15468/dl.3mc8fv
title: Occurrence Download

description: A dataset containing 131 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Specimen)",
 "Country is Costa Rica",
 "TaxonKey is Nyctomys sumichrasti"
 ]
}

 The dataset includes 131 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007421-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6m85v7
title: Occurrence Download

description: A dataset containing 23827 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Amphibia [GBIF Backbone Taxonomy], Sphenodontia [GBIF Backbone Taxonomy], Squamata [GBIF Backbone Taxonomy], Testudines [GBIF Backbone Taxonomy], Crocodylia [GBIF Backbone Taxonomy])",
 "GadmGid is one of (COL.21_2)"
 ]
 }
 ]
}

 The dataset includes 23827 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007423-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7qjszh
title: Occurrence Download

description: A dataset containing 213 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scilla siehei",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 213 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007424-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h7r3nf
title: Occurrence Download

description: A dataset containing 3003 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Year is 1969",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 3003 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007425-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e192708v1-188128
title: Replication Package: A Unifying Approach To Measuring Climate Change Impacts and Adaptation

description: Replication package for all analysis completed for the research article: A Unifying Approach to Measuring Climate Change Impacts and Adaptation<br>
DOI: 10.15468/dl.7ckw6m
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scilla tmoli",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007429-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n27xjx
title: Occurrence Download

description: A dataset containing 274902 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Burkina Faso",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 274902 records from 308 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007364-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.93ewuj
title: Occurrence Download

description: A dataset containing 16235 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Year is 1970",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 16235 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007430-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mgbyy5
title: Occurrence Download

description: A dataset containing 5875 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Apodemus uralensis"
 ]
}

 The dataset includes 5875 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007432-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vuwuvd
title: Occurrence Download

description: A dataset containing 211 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phedimus subcapitatus"
 ]
}

 The dataset includes 211 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007431-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17101147
title: Immunofluorescent imaging of MCF10A cells treated with OSM, IFNG, or EGF, under siRNA knockdown of 14 genes

description: This dataset contains immunofluorescent imaging of MCF10A mammary epithelial cells subjected to cytokine treatment and siRNA-mediated gene knockdown. MCF10A cells were cultured in DMEM/F12 growth medium supplemented with horse serum, hydrocortisone, cholera toxin, insulin, and EGF, then transitioned to growth factor-free medium prior to treatment. Cells were treated with either Oncostatin M (10 ng/mL), Interferon-gamma plus EGF (IFNG 20 ng/mL + EGF 10 ng/mL), or EGF alone (10 ng/mL).

For gene perturbations, siRNA knockdowns targeting 14 candidate regulators were performed using Lipofectamine RNAiMAX-mediated reverse transfection. Knockdown efficency was assessed functionally through phenotypic readouts. Following siRNA transfection and ligand treatment, cells were imaged using the Incucyte S3 microscope for 48 hours, with images acquired every 30 minutes. Fixed-cell immunofluorescent imaging was performed after 48 hours of ligand treatment. Cells were fixed in 4% formaldehyde, permeabilized, and blocked prior to staining with primary conjugated antibodies for B-Catenin and DAPI counterstaining. Imaging was performed using the InCell 6000 platform.

This dataset includes raw imaging data cross all conditions (ligand treatments and siRNA knockdowns), enabling the study of cytokine-incuded collective cell migration and phenotypic transitions in mammary epithelial cells. An excel table is included with Well metadata. Live cell imaging is available at the linked related Zenodo repositories.
DOI: 10.5281/zenodo.17101146
title: Immunofluorescent imaging of MCF10A cells treated with OSM, IFNG, or EGF, under siRNA knockdown of 14 genes

description: This dataset contains immunofluorescent imaging of MCF10A mammary epithelial cells subjected to cytokine treatment and siRNA-mediated gene knockdown. MCF10A cells were cultured in DMEM/F12 growth medium supplemented with horse serum, hydrocortisone, cholera toxin, insulin, and EGF, then transitioned to growth factor-free medium prior to treatment. Cells were treated with either Oncostatin M (10 ng/mL), Interferon-gamma plus EGF (IFNG 20 ng/mL + EGF 10 ng/mL), or EGF alone (10 ng/mL).

For gene perturbations, siRNA knockdowns targeting 14 candidate regulators were performed using Lipofectamine RNAiMAX-mediated reverse transfection. Knockdown efficency was assessed functionally through phenotypic readouts. Following siRNA transfection and ligand treatment, cells were imaged using the Incucyte S3 microscope for 48 hours, with images acquired every 30 minutes. Fixed-cell immunofluorescent imaging was performed after 48 hours of ligand treatment. Cells were fixed in 4% formaldehyde, permeabilized, and blocked prior to staining with primary conjugated antibodies for B-Catenin and DAPI counterstaining. Imaging was performed using the InCell 6000 platform.

This dataset includes raw imaging data cross all conditions (ligand treatments and siRNA knockdowns), enabling the study of cytokine-incuded collective cell migration and phenotypic transitions in mammary epithelial cells. An excel table is included with Well metadata. Live cell imaging is available at the linked related Zenodo repositories.
DOI: 10.15468/dl.8qgpg8
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crocosmia crocosmiiflora",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007434-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tgyj6t
title: Occurrence Download

description: A dataset containing 18790 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Year is 1971",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 18790 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007436-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10108962
title: Patch metrics and landscape patterns of forest disturbances at the beginning of the 20th Century

description: Summary:

The database consists of a compressed .CSV file containing structural information of forest disturbance patches identified between 2002 and 2014 using the Global Forest Change Tree Cover Loss Year dataset version 1.6 (Hansen et al, 2013) available at https://earthenginepartners.appspot.com/science-2013-global-forest/download_v1.6.html. Each row in the database represents a patch (249,149,911 in total). The columns (15) represent the structural metrics calculated for each patch, as well as the landscape patterns identified using kmeans cluster analysis. 

The methods used for building this database are published in the paper: Acil, N., Sadler, J.P., Senf, C. et al. Landscape patterns in stand-replacing disturbances across the world’s forests. Nat Sustain 8, 86–98 (2025). https://doi.org/10.1038/s41893-024-01450-3

Aggregated global maps of the patch metrics can be visualised in Google Earth Engine and accessed in the asset "http://projects/ee-treemort-disturbances-nacil/assets/PatchMetrics_Means_nonLU_2002-2014/". 

Some of the scripts associated with this project are hosted in GitHub and Google Earth Engine.

Additional scripts and data will be made available upon request.

 

  

Database structure: 

Patch metrics

Occurrence: 

Patch form and year were retrieved from the Global Forest Change tree cover loss year dataset version 1.6 (Hansen et al, 2013).




Column name
Description
Unit
Format
Valid values


PID
Patch unique identifier in the format Tile_Year_PatchNumber (e.g. 01U_02_00000001).
 
Characters
 


X_INT_deg
Longitude of the patch's internal centroid
Degrees
Float
[-180-180]


Y_INT_deg
Latitude of the patch's internal centroid
Degrees
Float
[-90-90]


YEAR_maj
Year of patch majority occurrence. 
 
Integer
[2-14]


YEAR_n
Number of years over which the patch exhibited continuous growth.
 
Integer
>0




Metrics: 

These patch and landscape metrics were calculated from the patch delineated.




Column name
Description
Unit
Format
Valid values


AREA_G_ha
Patch geodesic area
Hectares
Float
>0


PERIM_G_m
Patch geodesic perimeter
Meters
Float
>0


PARA
Perimeter-area ratio
 
Float
>0


SHAPE
Shape index
 
Float
>=1


ELONG
Elongation index
 
Float
[0-1[


FRAC
Fractal dimension index
 
Float
[1-2]


NN5000_T0_n
Number of patches assigned the same year within 5 km radius.
 
Integer
>0


NN5000_AREA_T0_perc
Percent of the total area disturbed over the period 2001-2018 within 5 km radius from the focal patch centroid.
%
Float
[0-100]




Clusters:

Cluster identification was performed using AREA_G_ha, YEAR_n, SHAPE, ELONG, NN5000_T0_n and NN5000_AREA_T0_perc. 




Column name
Description
Unit
Format
Valid values


CLUSTER_CODE
Code assigned to each cluster
 
Integer
[1-4]


CLUSTER_LABEL
Name given to the cluster identified. 
 
Character




Small-isolated

Clustered

Complex

Large-multiyear