cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/w23nhftz5j
title: XRD Dataset - Synthesis of pure LiNbO3 powders

description: This dataset contains X-ray diffraction (XRD) data of polycrystalline lithium niobate synthesized by solid-state reaction, intended for subsequent single-crystal fiber growth. The synthesis was carried out using lithium carbonate (Li₂CO₃) and niobium oxide (Nb₂O₅) as precursors. To evaluate the influence of precursor quality on the final phase, both high-purity reagents (4N) and lower-purity alternatives (2N) were tested. The precursors were first dried and homogenized by ball milling with zirconia spheres and isopropyl alcohol for 6 hours. After drying the mixtures at 70–100 °C to remove residual solvent, the synthesis was performed using two different approaches: directly as powder and in the form of pellets. For pelletization, a uniaxial press was used (0.7–1 ton), followed by isostatic pressing at 50 tons for 5 minutes. The synthesis involved a two-step heating process: first from 30 °C to 800 °C at 5 °C/min, held for 6 h; then from 800 °C to 1150 °C at 5 °C/min, for 8 h.

The files contain information on 2θ (degrees) and intensity (arbitrary units):
2N_Pellet.raw – XRD data for the sample synthesized using 2N-purity precursors, compacted as a pellet prior to the synthesis.
2N_Powder.raw – XRD data for the sample synthesized using 2N-purity precursors, processed directly in powder form prior to the synthesis.
4N_Pellet.raw – XRD data for the sample synthesized using high-purity 4N precursors, compacted as a pellet prior to the synthesis.
4N_Powder.raw – XRD data for the sample synthesized using high-purity 4N precursors, processed directly in powder form prior to the synthesis.

For the synthesis of iron-doped lithium niobate, ferric oxide (Fe₂O₃, 4N) was used as the dopant. The main difference in this process was the homogenization step, which was extended to 12 hours . In this case, the synthesis was carried out in pellet form.

LN_Fe0.05%.raw – XRD data for the sample synthesized using 4N-purity precursors with 0.05% mol iron (Fe) doping

The files are also provided in .xls format in the folder named "DRX" -&gt; "LiNbO3 and LiNbO3_Fe (.xls)" for easier access and visualization.
DOI: 10.6084/m9.figshare.13397651.v2
title: Expression of 97 surface markers and 462 mRNAs in 49057 cells from healthy young and healthy old bone marrow

description: Seurat v3 object<b><br></b><b>ASSAYS</b>:AB: Antibody expression dataRNA: mRNA expression dataBOTH: mRNA and Antibody expression data, concatenatedintegrated: Antibody and mRNA expression matrices were concatenated and data was integrated across patients using scanorama<br><b>DIMENSIONALITY REDUCTION</b><b>MOFAUMAP</b>: UMAP performed on MOFA dimensions. Display used in the manuscript. Set reduction="MOFAUMAP"in most cases!<br>ProjectedMOFA: Multi-OMICS factor analysis to integrate AB and RNA data. MOFA was run on scanorama-integrated data and served as input for clustering and further dimensionality reduction.MOFATSNE: UMAP performed on MOFA dimensions.<br><br><b>METADATA</b>Batch: Source individual (BM1-3, Aged1-3).class: Type of individual (healthy young, healthy old).<br><b>Change log: </b>Compared to the previous version of this file, the 3 AML patients were removed. A new object with 15 AML patients has been created: https://doi.org/10.6084/m9.figshare.14780127.v1<br>
DOI: 10.6084/m9.figshare.14043362.v1
title: Data and code from: Naïve individuals promote collective exploration in homing pigeons

description: This archive contains raw data, intermediate results, statistics, and figures for the manuscript "Naïve individuals promote collective exploration in homing pigeons"<br>Once unzipped, the folder structure will look as follow:- data/ [raw data and intermediate results]- img/ [all plots in the manuscript]- scripts/ [source code]<br>See data/README.txt and scripts/main.R
DOI: 10.6084/m9.figshare.21137209.v3
title: Dataset for 'Driver of Energetic Electron Precipitation in the Vicinity of Ganymede'

description: This dataset provides the modeling results for the paper 'Driver of Energetic Electron Precipitation in the Vicinity of Ganymede'. The Juno observation are obtained from the NASA Planetary Data System website (https://pds.nasa.gov), and are shown in Figures 1-2 in the paper. The modeling dataset includes the quasilinear calculations of the diffusion coefficients and Fokker Planck simulation results, fully describing the Figures 3-4 in the paper. The magnetic field line geometry shown in Supporting Information Figure S1 is also provided in this dataset.
DOI: 10.6084/m9.figshare.21601860.v1
title: Supplementary Material for: Clinical and Genomic Analysis of Patients With Short Survival After Surgery for Esophageal Squamous Cell Carcinoma

description: Objective: To investigate the prognosis of Chinese patients with ESCC after surgery and its correlation with genomic alterations (GAs) to identify potential prognostic markers. Methods: The clinical information, pathological specimens of 50 patients with stage II and III primary ESCC who were surgically resected. Based on overall survival, these patients were divided into the short OS group and the long OS group. Genomic alteration detection in patients with esophageal squamous cell carcinoma using next-generation sequencing. Results: There was no skew in the distribution of gender, smoking, and adjuvant therapy between the long OS group and the short OS group. A total of 372 GAs were detected in the 50 patients with ESCC, with 7 types of GAs, including insertions, deletions, and copy number variations (CNVs), and missense mutations occurred most frequently, with a frequency of &gt;50.0%. Tumor protein 53 was the most commonly mutated gene in the entire cohort followed by cyclin D1, cyclin-dependent kinase inhibitor 2A (CDKN2A), and fibroblast growth factor 19. More CDKN2A loss were detected in the short OS group than in the long OS group. The results of the multivariate analysis after adjustment for clinical factors showed a statistically significant difference in the CDKN2A loss between the two groups. Data obtained from The Cancer Genome Atlas for surgical ESCC for surgical ESCC revealed that the CDKN2A loss may be responsible for the poorer prognosis in postoperative patients with ESCC. Conclusion: In patients with progressive primary ESCC, the poor postoperative prognosis may be epiphenomenally associated with the CDKN2A loss.
DOI: 10.17632/khxvtshbs2
title: On the Prebiotic Selection of Nucleotide Anomers: Computational Data

description: The data generated for this article are obtained from computational quantum chemistry. The data consist of raw total molecular energies, zero-point energy-corrected molecular energies, and Gibbs energies, all obtained from the Density Functional Theory (DFT) calculations with the commonly used DFT functional B3LYP and the Pople-style basis set 6-31G(d,p). The calculated data include two sets obtained in parallel and contrasted: A vacuum (gas) phase set and corresponding calculations performed with implicit aqueous solvation implemented through the self-consistent reaction field (SCRF) polarizable continuum model (PCM) using the integral equation formalism variant (IEFPCM) as implemented in the Gaussian 16 suite of programmes.  The calculations give the energy differences between the α-anomers and the corresponding β-anomers of the canonical nucleosides and nucleotides as well as compares different hypothetical reaction paths that lead to the present-day nucleosides/nucleotides assembled from their three building blocks, namely, the sugar, the phosphate, and the nitrogenous base. A comparison is also given for the relative energies of the uracil (U) and thymine (T) nucleosides/nucleotides in their canonical forms contrasted with their form that is not generally observed in biological systems, that is, where T is linked to a ribose sugar and U to a deoxyribose sugar. This data can form the nucleus for a much larger database that includes non-canonical bases, sugars, and even linkers (different sugars, or linkers other than sugars e.g. peptide links) in an effort to pin-down the thermodynamics that led to the observed present day selection of the particular forms of these nucleic acid building blocks. Machine learning may be used in the future on such an enlarged dataset to estimate the relative stabilities of synthetic nucleoside/nucleotides that could perhaps be used in molecular medicine applications.
DOI: 10.6084/m9.figshare.28082048.v1
title: EPI-Clone dataset: Human CD34+ cells (A.1-A.7, B.1-B.5)

description: This is the dataset supporting the EPI-Clone manuscript: Targeted single cell methylation profiling of bone marrow was performed with the scTAMseq method. BM from seven donors was analyzed Donor characteristics are described in full in Table S1. This seurat object includes CD34+ cells from all donors A.1-A.7, B.1-B.5. For EPI-Clone analysis, only donors with &gt;1000 CD34+ cells covered were included.Dataset is an R Data File (RDS) with an integrated Seurat object across donors<b>ASSAYS:</b>AB: Antibody expression dataDNAm: DNA methylation data, containing binary observations (0: amplicon not observed, i.e. dropout or absence of DNA methylation, 1: amplicon observed, i.e. DNA methylation). See the paper on scTAMseq<b>DIMENSIONALITY REDUCTION</b>scanorama: scanorama performed on the DNAm+AB dataumap: UMAP computed on scanoramaTo create donor-specific static CpGs UMAPs, follow the vignette at https://github.com/veltenlab/EPI-clone<b>METADATA</b>sample: Donor (A.1 - A.7)age: Donor agecelltype: Cell type annotationNonHhaI: Performance of the control amplicons in that celllog_ChrY: Log number of reads on the ChromosomeY ampliconsEPIClone_id: Cluster annotation computed by EPI-Clonemutation: CH mutation called in each cell. N/A means dropout.
DOI: 10.6084/m9.figshare.1100423.v1
title: Data used in the paper "Metabolic rate and body size are linked with perception of temporal information"

description: Data used in the paper "Metabolic rate and body size are linked with perception of temporal information"
DOI: 10.6084/m9.figshare.16856248.v1
title: test2

description: Electrophysiological recording<br>
DOI: 10.6084/m9.figshare.5611294.v2
title: Enhancing knowledge of head and neck anatomy in preclinical medical students using low fidelity simulation

description: Dataset used in analysis of "Enhancing knowledge of head and neck anatomy in preclinical medical students using low-fidelity simulation"
DOI: 10.17632/s64tt77dps
title: original blot for western blot

description: orginial blots for western blot
DOI: 10.17632/7ndk9t84gf
title: Data for : Mobile Phone Use in Young Adults Who Self-Identify as Being 'Very Stressed Out' or 'Zen' : An Exploratory Study

description: This dataset was used to assess the relationship between mobile phone use and psychological stress levels in a submitted manuscript.
DOI: 10.6084/m9.figshare.1165589.v1
title: Digital Imaging of Root Traits (DIRT) – An online high-throughput phenotyping platform for analysis of root images

description: Poster at the 2014 Biology Retreat in Helen Georgia
DOI: 10.6084/m9.figshare.25245358.v1
title: Network file generated by vcontact2

description: source data of Fig. 4a
DOI: 10.6084/m9.figshare.4729672.v1
title: Petrogenesis and tectonic implications of late Mesozoic granitoids in southern Anhui Province, southeastern China

description: Late Mesozoic granitoids are widely distributed in southern Anhui Province, southeastern China, which also contains significant W–Mo–Cu mineralization. This study presents new geochronological and geochemical data that reveal the petrogenesis and tectonic affinity of the granitoids in this region. These granitoids can be divided into a high-K calc-alkaline and peraluminous I-type granodiorites, and an alkaline and metaluminous A-type granites, with zircon U–Pb dating indicating that they formed at 150–138 and 133–124 Ma, respectively. The early stage I-type granodiorites are adakitic, enriched in the light rare earth elements, and depleted in Nb, Ta, P, and Ti. They have negative zircon <i>ε</i><sub>Hf</sub>(<i>t</i>) values (–19.8 to –2.5) that correspond to Hf crustal model ages of 2.4–1.4 Ga. These early stage granodiorites were derived from partial melting of thickened Palaeoproterozoic–Mesoproterozoic lower crust. The late-stage A-type granites with strong depletion in Sr, P, and Ti, contain higher Zr, Y, and Yb contents, higher zircon <i>ε</i><sub>Hf</sub>(<i>t</i>) values (–1.5 to +2.1), and younger zircon Hf model ages (1.1–1.3 Ga) than the early stage granodiorites. The geochemistry of these A-type granites indicates they were likely generated by the reworking of Mesoproterozoic to Neoproterozoic juvenile crustal material that experienced the fractional crystallization of plagioclase and accessory minerals. Combining these data with other geological data from the study area indicates that the early stage granodiorites formed in a continental arc setting, whereas the late-stage granites formed in an extensional setting associated with roll-back of the subducted Palaeo-Pacific slab. The results indicate that zircon Ce<sup>4+</sup>/Ce<sup>3+</sup> value can provide useful insight into oxygen fugacity conditions during magmatism.
DOI: 10.17632/29kdphyb9k
title: FRF-based Pole-zero Method for Finite Element Model Updating

description: Codes and data of two numerical examples.
DOI: 10.17632/3cr2w748yh
title: Data for: AutoSynGrid: A MATLAB-based Toolkit for Automatic Generation of Synthetic Power Grids

description: Generated synthetic power grids by AutoSyngrid toolkit with three reference systems of NYISO, WECC, and ERCOT
DOI: 10.17632/4r7xgpdrj4
title: The Synthesis of Extracellular Vesicles by the Protistan Parasite Blastocystis (Raw Data)

description: Raw data pertaining to the journal article "The Synthesis of Extracellular Vesicles by the Protistan Parasite Blastocystis", by Steven Leonardi & Eileen Koh et. al.
DOI: 10.6084/m9.figshare.22657153.v1
title: Formation of necromass-derived soil organic carbon is regulated by the structure of dissolved organic matter and microbial carbon pump efficacy: A decadal study comparing biochar and maize straw

description: Rawdata for "Formation of necromass-derived soil organic carbon is regulated by the structure of dissolved organic matter and microbial carbon pump efficacy: A decadal study comparing biochar and maize straw"
DOI: 10.6084/m9.figshare.22890758.v2
title: Pranic Healing as a Complementary Therapy in Diabetic Foot Ulcer Management A Randomised, Controlled, Double-Blind Trial

description: This dataset is relevant to the clinical trial " <b>Pranic Healing as a Complementary Therapy in Diabetic Foot Ulcer Management : A Randomised,</b> <b>Controlled, Double-Blind Trial" conducted at KIER, Bangalore</b>
DOI: 10.6084/m9.figshare.25393159.v1
title: Results of VLMs in driving license written test

description: Results of VLMs in driving license written test
DOI: 10.6084/m9.figshare.28435322.v1
title: Data and R script for: Evolution of warming tolerance alters physiology and life history traits in zebrafish

description: Data and R script for data processing, analyses and visualisation.
DOI: 10.6084/m9.figshare.978904_d8
title: Validation: Benchmark  B3LYP, G4MP2, G4, CBS-QB3 enthalpies of atomization.

description: Validation: Benchmark B3LYP, G4MP2, G4, CBS-QB3 enthalpies of atomization.
DOI: 10.17632/r2dw9h9c2p
title: Impact of Disease Cyclicity on Quality-of-Life Impairment – A Mixed Method Explanatory Study

description: Supplementary Files for Impact of Disease Cyclicity on Quality-of-Life Impairment – A Mixed Method Explanatory Study
Files included: 
1. Initial Interview Guide 
2. Final Interview Guide 
3. COREQ checklist 
4. Data structure
DOI: 10.6084/m9.figshare.860448.v1
title: Statistical Comparison of Two ROC Curves

description: This excel file will do a statistical tests of whether two ROC curves are different from each other based on the Area Under the Curve. You'll need the coefficient from the presented table in the following article to enter the correct AUC value for the comparison: Hanley JA, McNeil BJ (1983) A method of comparing the areas under receiver operating characteristic curves derived from the same cases. Radiology 148:839-843.
DOI: 10.6084/m9.figshare.1017004.v3
title: A new species of small-bodied sparassodont (Mammalia, Metatheria) from the middle Miocene locality of Quebrada Honda, Bolivia

description: ABSTRACTThe Sparassodonta (Mammalia, Metatheria) are a group of carnivorous mammals that dominated the macropredatory guild of South America during the Cenozoic. Here, we describe a new sparassodont based on a single specimen from the middle Miocene Quebrada Honda local fauna of southern Bolivia. This specimen (UF 27881) does not clearly correspond to any major sparassodont group (e.g., Hathliacynidae, Borhyaenidae, etc.) and represents a morphotype previously unknown among the Sparassodonta. UF 27881 is distinguished from other sparassodonts by its short, broad, borhyaenid-like rostrum and small size, among other features. However, we decline to coin a new name for UF 27881 due to the fragmentary nature of this specimen and the absence of most of its dentition. This specimen suggests that the appearance of the Sparassocynidae and several hypercarnivorous didelphid taxa (including <i>Thylophorops</i>, <i>Thylatheridium</i>, <i>Lutreolina</i>, and <i>Hyperdidelphys</i>) represent an evolutionary response to the decline in small, predatory sparassodont taxa during the late Cenozoic. This study documents new morphological diversity among the Sparassodonta and highlights the value of fossils from traditionally undersampled parts of South America.SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at http://www.tandfonline.com/UJVP.
DOI: 10.6084/m9.figshare.16803370.v2
title: city_data

description: The shapefile contains the historical GDP and population of cities in three Chinese provinces.
DOI: 10.6084/m9.figshare.28617050.v1
title: Supplementary Material for: Deucravacitinib zeigt eine höhere Wirksamkeit und Sicherheit bei kutanem Lupus erythematodes im Vergleich zu verschiedenen Biologika und niedermolekularen Wirkstoffen: systematische Übersicht und Metaanalyse

description: Medicine
DOI: 10.6084/m9.figshare.6269090.v1
title: RAAAP SPSS Syntax file - processing

description: The RAAAP project surveyed Research Managers and Administrators from across the world, asking questions about why people became RMAs, why they stayed as RMAs, what skills they need for their jobs (soft and hard), what level of seniority they are, demographic information, and so on - overall up to 222 data points were collected from each respondent. This SPSS syntax file was developed to process the raw qualtrics data, including data cleansing and anonymising. The process is described in detail in the "RAAAP Data Cleansing Process" DOI:10.6084/m9.figshare.5948461
DOI: 10.17632/jxdzswkd8p
title: Optic Fibre Deployment in Rural Communities

description: The proposed computational application uses open data about Mexican rural location in which optic fibre must be deployed. First, download a driving distance graph from open street maps given two geographic coordinates. Then the application computes the shortest distance among all the rural communities to build the network topology (spanning tree). A novelty is that the application prioritises the rural communities to linked to the optic fibre network. 
The decision-maker defines the sorting criteria: i) link the most populated community, ii) link the nearest community, or iii) link the community that increases the ratio of covered people to kilometres of optic fibre.  The application generated the resulting maps.
DOI: 10.17632/j8xwxdtbyb
title: Data for: Phylogenomics of the superfamily Dytiscoidea (Coleoptera: Adephaga) with an evaluation of phylogenetic conflict and systematic error

description: File: 01.aaCOGS_and_nCOGs_unaligned_unfiltered.tar.gz Description: The 3,057 amino-acid COGs and the corresponding nucleotide COGs as they resulted from the orthology assignment step. File: 02.aaCOGs_and_nCOGs_aligned_filtered_unmasked.tar.gz Description: The 2,991 aligned aaCOGs and the corresponding codon-based nucleotide sequence alignments before applying alignment masking with ALISCORE. File: 03.aminoacid_supermatrices.tar.gz Description: All inferred amino-acid supermatrices and the corresponding partition files. File: 04.nucleotide_supermatrices.tar.gz Description: All inferred nucleotide supermatrices and the corresponding partition files.
DOI: 10.6084/m9.figshare.25024799.v2
title: A Review of Window Designs for Passive Cooling_data.xlsx

description: Indoor overheating risks are a common issue in urban dwellings. Climate change is making utilising operable windows for passive cooling in achieving indoor comfort becomes more challenging. This scenario is affecting the well-being of occupants, especially vulnerable people such as the elderly, children, and those in poverty. In this paper, we explored the existing literature on window designs for cooling particularly in multi-family urban dwellings through a Systematic Literature Review (SLR). We looked into the global cases of overheating risks and categorised them based on the Koppen-Geiger climatic classification. The results revealed that indoor overheating risks are higher in colder regions than in tropical regions in current and future climate scenarios. The review also led to the identification of a research gap in Window Usability Factors, a collective term for factors such as privacy, safety, security, noise, pollution, insects, and unpredictable weather conditions that inhibit urban dwellers from practically utilising their windows for cooling and sacrificing their comfort. Window Usability Factors are often overlooked when incorporating operable windows for cooling in multi-family urban dwellings. The findings suggest a crucial need for a more dynamic design to ensure the effectiveness of operable windows in mitigating indoor overheating risks.
DOI: 10.6084/m9.figshare.25805218.v1
title: Lo Bue et al., 2024 - Etna Tomographic Models

description: This dataset is to visualise in Paraview the ISO, ANISO-SLOW and ANISO-FAST Tomographic Models described in the paper Lo Bue et al. 2024, GRL: “Crustal Structure of Etna Volcano (Italy) from P-Wave Anisotropic Tomography”. For further material and information, please contact the authors directly.
DOI: 10.6084/m9.figshare.28861268.v1
title: Data

description: This dataset accompanies the manuscript on population dynamics and information flow between A1 and PFC during auditory decision-making. It includes single-trial neuronal activity for each neuron analyzed in the study. In total, there are 37 recording sessions: 12 from monkey 1 and 25 from monkey 2. All sessions feature simultaneously recorded neurons from both A1 and PFC. Additionally, single-session behavioral data are provided for both monkeys.
DOI: 10.6084/m9.figshare.12930986.v3
title: Database published in Global homogenization of the structure and function in the soil microbiome of urban greenspaces | Science Advances

description: Database published in Global homogenization of the structure and function in the soil microbiome of urban greenspaces | Science Advances