cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26029227
title: Intracellular and extracellular thiol-peptides modulate the response of <i>Marchantia polymorpha</i> to physiological needs, excess, and starvation of zinc, copper, and iron

description: Thiol-peptides, such as glutathione and phytochelatins, are believed to play a crucial role in regulating metal micronutrient needs (in particular, copper, iron, and zinc), and in detoxifying their excessive amounts. This study provides insight into the mechanisms involved in detoxification, starvation, and physiological control of the aforesaid metals in the liverwort <i>Marchantia polymorpha</i>. The results show that the phytochelatin synthase activity in gametophytes of <i>M. polymorpha</i> is induced mainly by zinc, followed by copper, and iron. Interestingly, the amount of phytochelatins produced seems to be controlled by the enzyme activity, rather than by the expression level of its gene. Moreover, when gametophytes are deprived of zinc, copper, and iron, phytochelatin levels decrease, compared with normal nutrient supply. Phytochelatins and glutathione, on the other hand, appear to play a key role in detoxification of excess zinc, copper, and iron, particularly when these thiol-peptides are released extracellularly. This suggests a potential novel function for phytochelatins and glutathione as detoxifying compounds also in the extracellular environment.
DOI: 10.6084/m9.figshare.26029227.v1
title: Intracellular and extracellular thiol-peptides modulate the response of <i>Marchantia polymorpha</i> to physiological needs, excess, and starvation of zinc, copper, and iron

description: Thiol-peptides, such as glutathione and phytochelatins, are believed to play a crucial role in regulating metal micronutrient needs (in particular, copper, iron, and zinc), and in detoxifying their excessive amounts. This study provides insight into the mechanisms involved in detoxification, starvation, and physiological control of the aforesaid metals in the liverwort <i>Marchantia polymorpha</i>. The results show that the phytochelatin synthase activity in gametophytes of <i>M. polymorpha</i> is induced mainly by zinc, followed by copper, and iron. Interestingly, the amount of phytochelatins produced seems to be controlled by the enzyme activity, rather than by the expression level of its gene. Moreover, when gametophytes are deprived of zinc, copper, and iron, phytochelatin levels decrease, compared with normal nutrient supply. Phytochelatins and glutathione, on the other hand, appear to play a key role in detoxification of excess zinc, copper, and iron, particularly when these thiol-peptides are released extracellularly. This suggests a potential novel function for phytochelatins and glutathione as detoxifying compounds also in the extracellular environment.
DOI: 10.6084/m9.figshare.25801499
title: Alpha-taxonomy underestimates the diversity in <i>Jacquemontia</i> (Convolvulaceae): a new hypothesis for <i>Jacquemontia evolvuloides</i> complex based on morphological, anatomical, and morphometric analyses

description: Interpreting plant morphological variability makes species delimitation a challenge. <i>Jacquemontia evolvuloides</i> and its relatives have been the target of different taxonomic classifications, either as multiple species and subspecies/varieties or as a single polymorphic species. Here we applied univariate and multivariate morphometric analyses, using both macro- and micromorphological characters of 22 populations comprising this species complex. Our analysis revealed six morphotypes with clear discontinuities in both macro- and micromorphological characters. One morphotype corresponds to <i>J. evolvuloides</i>, two correspond to previously named species, putted under a synonym, here re-established (<i>J. agrestis</i> and <i>J. decumbens</i>) and three morphotypes correspond to new species, described here. We present a complete taxonomic treatment of <i>J. evolvuloides</i> and related species, with descriptions, distribution maps, photographs, and illustrations, that indicate new synonyms.
DOI: 10.6084/m9.figshare.25801499.v1
title: Alpha-taxonomy underestimates the diversity in <i>Jacquemontia</i> (Convolvulaceae): a new hypothesis for <i>Jacquemontia evolvuloides</i> complex based on morphological, anatomical, and morphometric analyses

description: Interpreting plant morphological variability makes species delimitation a challenge. <i>Jacquemontia evolvuloides</i> and its relatives have been the target of different taxonomic classifications, either as multiple species and subspecies/varieties or as a single polymorphic species. Here we applied univariate and multivariate morphometric analyses, using both macro- and micromorphological characters of 22 populations comprising this species complex. Our analysis revealed six morphotypes with clear discontinuities in both macro- and micromorphological characters. One morphotype corresponds to <i>J. evolvuloides</i>, two correspond to previously named species, putted under a synonym, here re-established (<i>J. agrestis</i> and <i>J. decumbens</i>) and three morphotypes correspond to new species, described here. We present a complete taxonomic treatment of <i>J. evolvuloides</i> and related species, with descriptions, distribution maps, photographs, and illustrations, that indicate new synonyms.
DOI: 10.6084/m9.figshare.25911444
title: Microplastics mitigate the effects of glyphosate on the shikimic acid pathway enzymes in cyanobacteria

description: Microplastics, an environmental contaminant, can directly harm aquatic organisms and alter the toxicity and availability of other pollutants. The herbicide glyphosate (N-(phosphonomethyl) glycine) exerts its toxicity by inhibiting 5-enol-pyruvyl-shikimate-3-phosphate synthase (EPSPS), a key enzyme belonging to shikimic acid pathway that leads to the biosynthesis of aromatic amino acids; tolerance, instead, is dependent on a glyphosate -resistant EPSPS. We tested the effects of 0,2mM glyphosate alone and in combination with 170 mg/mL polyethylene microplastics (MPs) on the expression of EPSPS and chorismate synthase (ChS) on a culture of the cyanobacterium <i>Limnospira maxima.</i> Glyphosate caused the highest mortality after one week, with the resistant population surviving thereafter.However, when the culture was exposed to the combined treatment the mortality decreased. Proteomic profiles of treated cultures demonstrated that both enzymes were accumulated during the 21 days glyphosate treatment, suggesting that the surviving population of <i>L. maxima</i> might express glyphosate-resistant target enzymes. Treatment with combined solution caused a decrease of EPSPS and ChS levels compared to those of glyphosate alone. Our results strongly suggest that microplastics mitigate the toxicity of glyphosate towards target enzymes of the shikimic acid pathway, thereby increasing the resistance capacity of the <i>L. maxima</i> strain.
DOI: 10.6084/m9.figshare.25911444.v1
title: Microplastics mitigate the effects of glyphosate on the shikimic acid pathway enzymes in cyanobacteria

description: Microplastics, an environmental contaminant, can directly harm aquatic organisms and alter the toxicity and availability of other pollutants. The herbicide glyphosate (N-(phosphonomethyl) glycine) exerts its toxicity by inhibiting 5-enol-pyruvyl-shikimate-3-phosphate synthase (EPSPS), a key enzyme belonging to shikimic acid pathway that leads to the biosynthesis of aromatic amino acids; tolerance, instead, is dependent on a glyphosate -resistant EPSPS. We tested the effects of 0,2mM glyphosate alone and in combination with 170 mg/mL polyethylene microplastics (MPs) on the expression of EPSPS and chorismate synthase (ChS) on a culture of the cyanobacterium <i>Limnospira maxima.</i> Glyphosate caused the highest mortality after one week, with the resistant population surviving thereafter.However, when the culture was exposed to the combined treatment the mortality decreased. Proteomic profiles of treated cultures demonstrated that both enzymes were accumulated during the 21 days glyphosate treatment, suggesting that the surviving population of <i>L. maxima</i> might express glyphosate-resistant target enzymes. Treatment with combined solution caused a decrease of EPSPS and ChS levels compared to those of glyphosate alone. Our results strongly suggest that microplastics mitigate the toxicity of glyphosate towards target enzymes of the shikimic acid pathway, thereby increasing the resistance capacity of the <i>L. maxima</i> strain.
DOI: 10.57967/hf/2756
title: TopicContinuity
DOI: 10.18712/nsd-nsd3186-v1
title: Survey of consumer expenditure, 2022

description: The survey of consumer expenditure provides a detailed picture of Norwegian households yearly consumption of different goods and services. Further it provides insight in the variety of consumption between different types of households, and how the consumption pattern changes over time. Detailed overviews of private households consumption have formed an important  foundation for research about income, living conditions and e.g. effects of the tax systems use of direct and indirect taxes. The data can also be utilised for studies of  compelementary demand, in economic planning models, or for specification of private consumption in national accounts. The households are classified according to features like household type, income level, occupational status and age, region, sex, total consumption in NOK and more. The number of households in the net sample for 2022 was 3507.
DOI: 10.15468/dl.e9y37q
title: Occurrence Download

description: A dataset containing 2881 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Viburnum furcatum Blume ex Hook.fil. & Thomson"
 ]
}

 The dataset includes 2881 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033500-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.48h4we
title: Occurrence Download

description: A dataset containing 350 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Troglodytes aedon cahooni Brewster, 1888"
 ]
}

 The dataset includes 350 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033501-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tx9pnp
title: Occurrence Download

description: A dataset containing 2908 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cerasus sargentii (Rehder) H.Ohba"
 ]
}

 The dataset includes 2908 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033503-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8n5pu5
title: Occurrence Download

description: A dataset containing 19922 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carpinus cordata Blume"
 ]
}

 The dataset includes 19922 records from 192 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033502-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26354689
title: Supplementary Material for: Case Report; Enhancing Visual Acuity through Combined Intraocular lens Fixation, Penetrating Keratoplasty, and Vitrectomy: The Role of Temporary Landers Wide-Field Keratoprosthesis

description: Introduction: Complex corneal conditions present surgical challenges and necessitates innovation. Here, we present two cases where we combined intraocular lens trans-scleral fixation with the double-needle Yamane technique, penetrating keratoplasty, and underwent vitrectomy using a temporary Landers wide-field keratoprosthesis.
Case presentation: Case 1 involved a 70-year-old man with an aphakic eye of bullous keratopathy and corneal opacity owing to multiple penetrating and endothelial keratoplasty, endophthalmitis, and herpetic keratitis. His visual acuity was counting fingers at 20 cm before surgery. Penetrating keratoplasty with vitrectomy and intraocular lens scleral fixation was performed with the double-needle Yamane technique, and 10 months postoperatively, his best-corrected visual acuity improved to 0.6, presenting a clear cornea. Case 2 involved a 62-year-old man who underwent penetrating keratoplasty twice for corneal perforation and therapeutic penetrating keratoplasty with vitrectomy for traumatic globe rupture, resulting in the loss of intraocular lens. The patient exhibited graft failure, and his best-corrected visual acuity was 0.03. Utilizing a temporary Landers wide-field keratoprosthesis, we performed penetrating keratoplasty and intraocular lens trans-scleral fixation without complications. His final best-corrected visual acuity improved to 0.15 with a clear cornea. 
Conclusions: Trans-scleral fixation of intraocular lens with penetrating keratoplasty, using temporary Landers wide-field keratoprosthesis, yielded positive clinical outcomes without serious complications.
DOI: 10.6084/m9.figshare.26354689.v1
title: Supplementary Material for: Case Report; Enhancing Visual Acuity through Combined Intraocular lens Fixation, Penetrating Keratoplasty, and Vitrectomy: The Role of Temporary Landers Wide-Field Keratoprosthesis

description: Introduction: Complex corneal conditions present surgical challenges and necessitates innovation. Here, we present two cases where we combined intraocular lens trans-scleral fixation with the double-needle Yamane technique, penetrating keratoplasty, and underwent vitrectomy using a temporary Landers wide-field keratoprosthesis.
Case presentation: Case 1 involved a 70-year-old man with an aphakic eye of bullous keratopathy and corneal opacity owing to multiple penetrating and endothelial keratoplasty, endophthalmitis, and herpetic keratitis. His visual acuity was counting fingers at 20 cm before surgery. Penetrating keratoplasty with vitrectomy and intraocular lens scleral fixation was performed with the double-needle Yamane technique, and 10 months postoperatively, his best-corrected visual acuity improved to 0.6, presenting a clear cornea. Case 2 involved a 62-year-old man who underwent penetrating keratoplasty twice for corneal perforation and therapeutic penetrating keratoplasty with vitrectomy for traumatic globe rupture, resulting in the loss of intraocular lens. The patient exhibited graft failure, and his best-corrected visual acuity was 0.03. Utilizing a temporary Landers wide-field keratoprosthesis, we performed penetrating keratoplasty and intraocular lens trans-scleral fixation without complications. His final best-corrected visual acuity improved to 0.15 with a clear cornea. 
Conclusions: Trans-scleral fixation of intraocular lens with penetrating keratoplasty, using temporary Landers wide-field keratoprosthesis, yielded positive clinical outcomes without serious complications.
DOI: 10.5281/zenodo.12798335
title: Improved estimation of the prevalence of bovine cysticercosis and the diagnostic test characteristics in the absence of a reference standard using Bayesian Latent Class models, the example of Jimma and Ambo Abattoirs, Ethiopia

description: Bovine cysticercosis is an infection of cattle musculature with the cestode parasite of humans known as Taenia saginata. This bovine cysticercosis data was collected from two Ambattoirs in Ethiopia namely Ambo and Jimma. Dissection of the predilection site, Ag-ELISA, and meat inspection were the diagnostic methods employed. Cysticerci collected during dissection of the predilection site were also confirmed using multiplex PCR.
DOI: 10.5281/zenodo.12798336
title: Improved estimation of the prevalence of bovine cysticercosis and the diagnostic test characteristics in the absence of a reference standard using Bayesian Latent Class models, the example of Jimma and Ambo Abattoirs, Ethiopia

description: Bovine cysticercosis is an infection of cattle musculature with the cestode parasite of humans known as Taenia saginata. This bovine cysticercosis data was collected from two Ambattoirs in Ethiopia namely Ambo and Jimma. Dissection of the predilection site, Ag-ELISA, and meat inspection were the diagnostic methods employed. Cysticerci collected during dissection of the predilection site were also confirmed using multiplex PCR.
DOI: 10.15468/dl.r278d5
title: Occurrence Download

description: A dataset containing 1414 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Uncaria lanosa Wall."
 ]
}

 The dataset includes 1414 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033505-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dtgmvc
title: Occurrence Download

description: A dataset containing 8531 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dryopteris crassirhizoma Nakai"
 ]
}

 The dataset includes 8531 records from 164 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033507-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vv26gz
title: Occurrence Download

description: A dataset containing 4501 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schisandra chinensis (Turcz.) Baill."
 ]
}

 The dataset includes 4501 records from 159 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033508-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h8jzvg
title: Occurrence Download

description: A dataset containing 771 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "OccurrenceStatus is Present",
 "TaxonKey is Cortaderia selloana (Schult. & Schult.f.) Asch. & Graebn."
 ]
}

 The dataset includes 771 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033509-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zakh6x
title: Occurrence Download

description: A dataset containing 1895 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spuriopimpinella calycina (Maxim.) Kitag."
 ]
}

 The dataset includes 1895 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033510-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tvze4q
title: Occurrence Download

description: A dataset containing 1193 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Environmental Baseline Survey, Block 567 – South Africa – 2022 – TotalEnergies E&P South Africa B.V."
 ]
}

 The dataset includes 1193 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033511-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12798333
title: Unveiling Pathophysiological Insights: Serum Metabolic Dysregulation in Acute Respiratory Distress Syndrome Patients with Acute Kidney Injury

description: The uploaded data is an Excel sheet obtained after performing the binning of 1H CPMG NMR spectra acquired using 800 MHz NMR on the serum samples of ARDS patients and ARDS with AKI patients.
DOI: 10.5281/zenodo.12798334
title: Unveiling Pathophysiological Insights: Serum Metabolic Dysregulation in Acute Respiratory Distress Syndrome Patients with Acute Kidney Injury

description: The uploaded data is an Excel sheet obtained after performing the binning of 1H CPMG NMR spectra acquired using 800 MHz NMR on the serum samples of ARDS patients and ARDS with AKI patients.
DOI: 10.4121/d3455b3c-54d8-4ef8-8501-a70936a51dad
title: Supplementary Information: RNA-Seq analysis of Brassicaceae species under different irradiances

description: This package contains supplementary information supporting conclusions from an RNA-Seq experiment conducted on Brassicaceae species grown under different irradiances. In this study, co-authors and I aimed to comprehend the genetic and physiological underpinnings of photosynthetic light-use efficiency (LUE) under high irradiance conditions, focusing on the plant species <em>Hirschfeldia incana</em>. We performed a comparison of the transcriptional signature associated to very high, "supernatural" irradiance in <em>H. incana </em>with three other Brassicaceae plants (<em>Arabidopsis thaliana</em>, <em>Brassica rapa</em>, and <em>Brassica nigra</em>), which previously demonstrated lower photosynthetic LUE. By utilizing a panproteome, we assessed gene expression patterns in response to high irradiance across the four species. Our findings reveal that all species actively regulate genes linked to photosynthesis. Analyzing genes associated with three key photosynthetic pathways, we observed a consistent pattern of reduced gene expression under high irradiance conditions. Notably, specific genes exhibited differential expression exclusively in <em>H. incana</em>, while in other instances, transcript abundance was consistently higher in<em> H. incana </em>regardless of light intensity. In conclusion, the study this software supports presents the first comparative transcriptome analysis of plant species grown entirely under prolonged high irradiance, rather than just briefly exposed to it. We demonstrate that, in contrast to other Brassicaceae species, <em>H. incana </em>subjected to intense irradiance displays enhanced gene expression related to photosynthesis through distinct mechanisms: canonical differential expression, inherent elevated expression of single-copy genes, and cumulative elevated expression via simultaneous expression of multiple gene copies. This research establishes a crucial groundwork for future endeavors aimed at comprehending elevated photosynthetic light-use efficiency and ultimately achieving highly effective photosynthesis in agricultural crops.