cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3607052_d1.v1
title: Additional file 3: Table S2. of Genome-wide cataloging and analysis of alternatively spliced genes in cereal crops

description: Conserved alternative splicing gene list in rice, sorghum, corn, and Brachypodium distachyon. (XLS 75 kb)
DOI: 10.6084/m9.figshare.c.3607052_d2.v1
title: Additional file 2: Table S3. of Genome-wide cataloging and analysis of alternatively spliced genes in cereal crops

description: Number of conserved alternative splicing genes in cereal crops. (XLS 31 kb)
DOI: 10.6084/m9.figshare.c.3607052_d3.v1
title: Additional file 1: Table S1. of Genome-wide cataloging and analysis of alternatively spliced genes in cereal crops

description: Protein family classification of alternative genes in cereal plants. (XLS 402 kb)
DOI: 10.6084/m9.figshare.c.3607088_d3.v1
title: MOESM1 of A retrospective analysis of eye conditions among children attending St. John Eye Hospital, Hebron, Palestine

description: Additional file 1: Table S1. Categories and subcategories used in study.
DOI: 10.6084/m9.figshare.c.3607070_d6.v1
title: Additional file 2: of Genetic composition of captive panda population

description: Founder and habitat contributions to the captive panda population. (XLSX 100 kb)
DOI: 10.6084/m9.figshare.c.3607097_d4.v1
title: Additional file 4: Table S1. of Genome-wide polymorphism and signatures of selection in the symbiotic sea anemone Aiptasia

description: Read coverage based genotyping of Symbiodinium communities harbored by Aiptasia strains. (XLS 40 kb)
DOI: 10.6084/m9.figshare.c.3607070_d7.v1
title: Additional file 4: of Genetic composition of captive panda population

description: Habitat contributions and inbreeding coefficients of hypothetical offspring of all 17,640 possible mating pairs between 140 male and 126 female breeding candidates. (XLSX 5238 kb)
DOI: 10.6084/m9.figshare.c.3607088_d4.v1
title: MOESM2 of A retrospective analysis of eye conditions among children attending St. John Eye Hospital, Hebron, Palestine

description: Additional file 2: Table S2. Morbidities, diagnosis and age groups. Most common morbidities including sub-categories are shown. Categories excluded: cornea and sclera, diabetic retinopathy, dislocated lens, neuro-ophthalmic diseases, orbit, retina and vitreous, miscellaneous causes.
DOI: 10.6084/m9.figshare.c.3607097_d5.v1
title: Additional file 2: Table S3. of Genome-wide polymorphism and signatures of selection in the symbiotic sea anemone Aiptasia

description: GO enrichment analysis for gene models in outlier regions from Table S2. (XLS 156 kb)
DOI: 10.6084/m9.figshare.c.3607109_d1.v1
title: Additional File 2:

description: Title of data: Nearest neighbour species detection frequencies. Description of data: The number of sequence reads associated with each nearest neighbour species detected in each sample library are shown.
DOI: 10.6084/m9.figshare.c.3607133_d6.v1
title: Additional file 5: of Identification of microRNAs regulating Escherichia coli F18 infection in Meishan weaned piglets

description: Potential target genes prediction analysis of differential expressed miRNAs between E. coli F18-resistant and -sensitive groups. (XLSX 2596Â kb)
DOI: 10.6084/m9.figshare.c.3607130_d5.v1
title: Additional file 2: of Description of the interaction between Candida albicans and macrophages by mixed and quantitative proteome analysis without isolation

description: Proteins identified in this study from co-culture of C. albicans (483 proteins) and macrophages (1,253 proteins).
DOI: 10.6084/m9.figshare.c.3607160_d2.v1
title: Additional file 12: Table S7. of A novel approach identifies the first transcriptome networks in bats: a new genetic model for vocal communication

description: FOXP1-target relationships identified in the midnight blue network. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3607160_d3.v1
title: Additional file 9: Table S5. of A novel approach identifies the first transcriptome networks in bats: a new genetic model for vocal communication

description: Full GO for PAG modules (XLSX 83 kb)
DOI: 10.6084/m9.figshare.c.3607130_d7.v1
title: Additional file 1: of Description of the interaction between Candida albicans and macrophages by mixed and quantitative proteome analysis without isolation

description: False positive proteins of C. albicans (18 proteins) and macrophage (30 proteins).
DOI: 10.6084/m9.figshare.c.3607160_d5.v1
title: Additional file 4: Table S2. of A novel approach identifies the first transcriptome networks in bats: a new genetic model for vocal communication

description: Gene ontology of top 500 overexpressed genes for cortex and PAG (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3607160_d6.v1
title: Additional file 10: Table S6. of A novel approach identifies the first transcriptome networks in bats: a new genetic model for vocal communication

description: Full GO for cortex modules (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3607172_d1.v1
title: Additional file 1: of Peripheral blood toll-like receptor 4 correlates with rapid virological response to pegylated-interferon and ribavirin therapy in hepatitis C genotype 1 patients

description: Raw data of these population. (XLS 79Â kb)
DOI: 10.6084/m9.figshare.c.3607190_d3.v1
title: Additional file 1: Table S1. of Leveraging global gene expression patterns to predict expression of unmeasured genes

description: Distribution of eligible genes across PANTHER Go-slim pathways. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3607190_d4.v1
title: Additional file 3: Table S2. of Leveraging global gene expression patterns to predict expression of unmeasured genes

description: Summary of GGS parameter sweep and expression prediction results. (XLSX 46Â kb)
DOI: 10.6084/m9.figshare.c.3607220_d1.v1
title: MOESM1 of Bioreactor performance parameters for an industrially-promising methanotroph Methylomicrobium buryatense 5GB1

description: Additional file 1: Table S1 . 5GB1 fatty acid composition when grown on methane and methanol. M. buryatense fatty acid composition.
DOI: 10.6084/m9.figshare.c.3607226_d2.v1
title: Additional file 6: of Hypomethylation coordinates antagonistically with hypermethylation in cancer development: a case study of leukemia

description: ENCODE enrichment results. This is an “xls” file that provides the ENCODE epi-genomic mark enrichment analysis results from Gm12878 cell line with the name and the description of the datasets, enrichment p values that are adjusted for multiple testing using FDR, for hypo/hyper-C-DMRs in separate excel sheets, respectively, along with the name of the regulatory mark. It also consists of enrichment analysis results from all ENCODE cell lines for each regulatory mark in hypo- and hyper-C-DMRs. (XLS 117 kb)
DOI: 10.6084/m9.figshare.c.3607226_d3.v1
title: Additional file 9: of Hypomethylation coordinates antagonistically with hypermethylation in cancer development: a case study of leukemia

description: Gene module membership. This is an “xls” file that provides the matrix for transcript’s module membership or eigengene-based connectivity measure of each transcript for each methylation and expression module for 3′UTRs in separate excel sheet, respectively. (XLS 1395 kb)
DOI: 10.6084/m9.figshare.c.3607226_d4.v1
title: Additional file 2: of Hypomethylation coordinates antagonistically with hypermethylation in cancer development: a case study of leukemia

description: List of C-DMRs. This is an “xls” file providing coordinates for hyper- and hypo-C-DMRs common across all control tests in separate excel sheets, respectively. (XLS 117 kb)
DOI: 10.6084/m9.figshare.c.3607241_d2.v1
title: Additional file 1: of Publication proportions for registered breast cancer trials: before and following the introduction of the ClinicalTrials.gov results database

description: Data extraction template. File containing the 340 registered trials included in the study with the extracted data. (XLSX 115 kb)
DOI: 10.6084/m9.figshare.c.3607277_d1.v1
title: Additional file 1: of Molecular and structural considerations of TF-DNA binding for the generation of biologically meaningful and accurate phylogenetic footprinting analysis: the LysR-type transcriptional regulator family as a study model

description: List of the 150 organisms whose genomic sequences were used in our study. (XLSX 69 kb)
DOI: 10.6084/m9.figshare.c.3607286_d1.v1
title: MOESM2 of Deletion of the 2-acyl-glycerophosphoethanolamine cycle improve glucose metabolism in Escherichia coli strains employed for overproduction of aromatic compounds

description: Additional file 2: Table S2. Mutation rates in both evolved strains based on mutation appearance in the rpoB locus. Mutation rates were determined by a modified Luria-Delbrück fluctuation test, employing the MSS-MLE and the LC methods in the estimation of the number of mutants [30–32]. The mutation frequency also was determinated.
DOI: 10.6084/m9.figshare.c.3607286_d2.v1
title: MOESM5 of Deletion of the 2-acyl-glycerophosphoethanolamine cycle improve glucose metabolism in Escherichia coli strains employed for overproduction of aromatic compounds

description: Additional file 5: Table S4. Oligonucleotides employed in this study. This table lists the oligonucleotides utilized in this work. Section A shows the oligonucleotides used for DNA sequencing with the Sanger method, for the gene disruption confirmations generated by Datsenko-Wanner method and the deletion confirmation that occurred in the evolved strains. Section B lists the oligonucleotides utilized for gene disruption with the Datsenko-Wanner methodology. Section C lists the oligonucleotides utilized for RT-qPCR analysis not previously reported.
DOI: 10.6084/m9.figshare.c.3607283_d3.v1
title: Additional file 3: Table S3. of Molecular epidemiology of drug-resistant Neisseria gonorrhoeae in Russia (Current Status, 2015)

description: List of all isolates used in this study with their sequence types, drug resistance profiles and biochip analysis data. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3607286_d4.v1
title: MOESM4 of Deletion of the 2-acyl-glycerophosphoethanolamine cycle improve glucose metabolism in Escherichia coli strains employed for overproduction of aromatic compounds

description: Additional file 4: Table S3. RT-qPCR mRNA expression values of central carbon metabolism, in the evolved strains. Relative mRNA concentrations of central metabolism and regulatory genes of PB11, PB12 and PB13 strains, grown in glucose as the sole carbon source were determined by RT-qPCR. Most of these values have been previously reported (*) and are presented here for discussion and comparison purposes [2, 9–11]. Data in this table are reported as relative expression levels of the parental strain JM101. The mRNA level of each gene in the parental strain was used as control to normalize the data, assigning it the value of one. N.D. Not determined.
DOI: 10.6084/m9.figshare.c.3607301_d1.v1
title: Additional file 1: Table S1. of Fluorescence activated cell sorting followed by small RNA sequencing reveals stable microRNA expression during cell cycle progression

description: Characterization of cell cycle sorted cells and isolated RNA quantity in various cell types. Purity of cell cycle sort was determined by re-analyzing the sorted populations by FACS analysis: percentage was determined by the portion of cells residing in the gate previously designated for a certain cell cycle phase. Data of four replicate experiments. Data are given as × 1000 cells (sorted cells) and are shown as mean ± standard deviation. Table S2. Name and details of primers used for mRNA and miRNA expression qRT-PCR measurements. mRNA primers (Panel A, cat. No: 4331182) and miRNA primers (Panel B, cat. No: 4427975). All primers were from Applied Biosystems by Life Technologies. Table S3. Normalized expression of differently expressed genes between cell cycle phases in various cell types. Normalized expression of genes with fold change &gt; 2 between cell cycle phases detected in HDFa cells (Panel A). Normalized expression of significantly differently expressed genes in cell cycle phases detected in NCI-H295R (Panel B) and HeLa (Panel C) cells. Note: For Panel B and C, genes are listed in the manner as shown in the heat map (Fig. 2, panel A and B, respectively). Table S4. List of genes shown on Venn diagram (Fig. 3, panel a). Genes are marked with “1” if being found cycling by either method (HDFa SORT, PF synchr, HeLa SORT, HeLa synchr). Gene IDs are Gene Symbols, if available or probe IDs. Table S5. List of HeLa cell cycle genes being present in enriched GO terms. Table 1 presents GO terms which are enriched in gene lists unique to HeLa SORT, HeLa synchronization experiments and the overlap beween HeLa SORT and synchronization lists. Gene symbols of genes being present in the gene lists and the enriched GO terms are shown here (HeLa SORT \ HeLa synchr - Panel A; HeLa synchr \ HeLa SORT – Panel B; HeLa SORT ∩ HeLa synchr – Panel C). (XLS 743 kb)
DOI: 10.6084/m9.figshare.c.3607286_d5.v1
title: MOESM1 of Deletion of the 2-acyl-glycerophosphoethanolamine cycle improve glucose metabolism in Escherichia coli strains employed for overproduction of aromatic compounds

description: Additional file 1: Table S1. This table lists the data provided by Winter Genomics Inc. (WG) obtained from the whole genome sequence of the PB13 strain in comparison to the parental strains JM101 and PB11. Section A includes a list of 13 genes in which, accordingly to this company non-synonymous point mutations occurred changing the coding regions in structural genes. The table also includes (Section B) the list of 8 genes in which synonymous mutations also occurred.
DOI: 10.6084/m9.figshare.c.3607328_d5.v1
title: Additional file 4: of 
                     Alu SINE analyses of 3,000-year-old human skeletal remains: a pilot study

description: Detailed information on the Alu loci. The Microsoft Excel file contains detailed information about the exact lengths of the amplicons for every genomic Alu locus investigated in this study. Additionally shown are the lengths of the A-tails and the Target Site Duplications (TSD), as well as the sequences of the TSDs. (XLS 36Â kb)
DOI: 10.6084/m9.figshare.c.3607352_d2.v1
title: Additional file 10: of Evaluation of the External RNA Controls Consortium (ERCC) reference material using a modified Latin square design

description: Agilent 2-color ERCC controls data in comma-separated values (CSV) format. (CSV 14Â kb)
DOI: 10.6084/m9.figshare.c.3607352_d3.v1
title: Additional file 12: of Evaluation of the External RNA Controls Consortium (ERCC) reference material using a modified Latin square design

description: Illumina NGS ERCC controls data in comma-separated values (CSV) format. (CSV 9Â kb)
DOI: 10.6084/m9.figshare.c.3607355_d2.v1
title: Additional file 1: of Gene expression profiling of the human natural killer cell response to Fc receptor activation: unique enhancement in the presence of interleukin-12

description: Supplemental TableÂ  1 provides a full list of differentially expressed (2-fold or greater) genes from the microarray studies and their change in expression calculated from the following comparisons: 1) immobilized IgG stimulated NK cells vs. unstimulated NK cells (medium), 2) IL-12 stimulated NK cells vs. medium, and 3) IgG plus IL-12 co-stimulated NK cells vs. medium. (XLS 125Â kb)
DOI: 10.6084/m9.figshare.c.3607331_d6.v1
title: Additional file 9: Table S13. of Genome-wide data reveal cryptic diversity and genetic introgression in an Oriental cynopterine fruit bat radiation

description: Net interspecies genetic distances of the cytb dataset. All distances were calculated using the TrNâ  +â  G model. (XLSX 38Â kb)
DOI: 10.6084/m9.figshare.c.3607364_d2.v1
title: Additional file 8: of Positive selection in development and growth rate regulation genes involved in species divergence of the genus Radix

description: Annotations and evolutionary models of the clusters used for phylogenetic inference. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3607331_d7.v1
title: Additional file 6: Table S7. of Genome-wide data reveal cryptic diversity and genetic introgression in an Oriental cynopterine fruit bat radiation

description: Population wise assessments of null alleles and deviation from Hardy-Weinberg equilibrium. (XLS 26Â kb)
DOI: 10.6084/m9.figshare.c.3607370_d1.v1
title: Additional file 5: of Comprehensive transcriptome analysis of Crocus sativus for discovery and expression of genes involved in apocarotenoid biosynthesis

description: Details of transcription factor and conserved domain families. (XLSX 2674Â kb)
DOI: 10.6084/m9.figshare.c.3607355_d4.v1
title: Additional file 3: of Gene expression profiling of the human natural killer cell response to Fc receptor activation: unique enhancement in the presence of interleukin-12

description: Supplemental TableÂ  2 contains a complete list of the individual genes within each functional category. (XLS 45Â kb)
DOI: 10.6084/m9.figshare.c.3607367_d2.v1
title: Additional file 3: of A next generation sequencing-based method to study the intra-host genetic diversity of norovirus in patients with acute and chronic infection

description: NoV SNV calling results. This file lists all synonymous and non-synonymous NoV SNVs detected by FreeBayes in samples SP1, SP2, and a subset of sequences from SP1 that produced an average NoV coverage similar to thatobserved in SP2. (XLSX 38Â kb)
DOI: 10.5281/zenodo.13983118
title: Experimental dataset for the manuscript: Soft X-ray Emission Spectroscopy on Phosphorus Containing Compounds for Energy Conversion and Storage

description: Experimental dataset for the manuscript: Soft X-ray Emission Spectroscopy on Phosphorus Containing Compounds for Energy Conversion and Storage
DOI: 10.5281/zenodo.13983119
title: Experimental dataset for the manuscript: Soft X-ray Emission Spectroscopy on Phosphorus Containing Compounds for Energy Conversion and Storage

description: Experimental dataset for the manuscript: Soft X-ray Emission Spectroscopy on Phosphorus Containing Compounds for Energy Conversion and Storage
DOI: 10.6084/m9.figshare.c.3607370_d6.v1
title: Additional file 7: of Comprehensive transcriptome analysis of Crocus sativus for discovery and expression of genes involved in apocarotenoid biosynthesis

description: GO and KEGG classes in flower upregulated genes. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.c.3607352_d11.v1
title: Additional file 8: of Evaluation of the External RNA Controls Consortium (ERCC) reference material using a modified Latin square design

description: NIAID microarray ERCC controls data in comma-separated values (CSV) format. (CSV 15Â kb)
DOI: 10.6084/m9.figshare.c.3607352_d12.v1
title: Additional file 9: of Evaluation of the External RNA Controls Consortium (ERCC) reference material using a modified Latin square design

description: Agilent 1-color ERCC controls data in comma-separated values (CSV) format. (CSV 14Â kb)
DOI: 10.6084/m9.figshare.c.3607370_d8.v1
title: Additional file 4: of Comprehensive transcriptome analysis of Crocus sativus for discovery and expression of genes involved in apocarotenoid biosynthesis

description: GO and KEGG classes of Crocus transcripts. (XLSX 18460Â kb)
DOI: 10.6084/m9.figshare.c.3607397_d1.v1
title: Additional file 13: of CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries

description: Supplementary file 1. Perl script generating random sgRNA target sites. (PL 1 kb)
DOI: 10.6084/m9.figshare.28043048
title: Repeatability measurement of using adhesive bond for attaching a laser tracker's SMR to a robot flange

description: This data is part of the paper: "Design and Evaluation of a Low-Cost Mount for Attaching a Laser Tracker’s SMR to a Robot Flange". It was created by using the software FARO CAM2 for the laser tracker FARO Vantage E with a 1.5 inch Standard Accuracy Break Resistant SMR from FARO with gold covering, a range of 60 m and a centring accuracy of &lt; ±7.6 µm. For the measurements the SMR is placed in a monument attached with adhesive bond to the robot flange facing the laser tracker. It is used to evaluate the accuracy of the designed mount by comparing its eccentricity and repeatability to the method of using an adhesive bond.All measurement values are positional data in the three-dimensional coordinate system (x,y,z) in mm.As a comparison to the designed mount, the current SMR fixture using an adhesive bond was analysed. The repeatability of attaching the monument at the same position with adhesive bond was tested. The monument was placed ten times in the same position as close as possible. The position of a SMR in the monument was then measured.
DOI: 10.6084/m9.figshare.28043048.v1
title: Repeatability measurement of using adhesive bond for attaching a laser tracker's SMR to a robot flange

description: This data is part of the paper: "Design and Evaluation of a Low-Cost Mount for Attaching a Laser Tracker’s SMR to a Robot Flange". It was created by using the software FARO CAM2 for the laser tracker FARO Vantage E with a 1.5 inch Standard Accuracy Break Resistant SMR from FARO with gold covering, a range of 60 m and a centring accuracy of &lt; ±7.6 µm. For the measurements the SMR is placed in a monument attached with adhesive bond to the robot flange facing the laser tracker. It is used to evaluate the accuracy of the designed mount by comparing its eccentricity and repeatability to the method of using an adhesive bond.All measurement values are positional data in the three-dimensional coordinate system (x,y,z) in mm.As a comparison to the designed mount, the current SMR fixture using an adhesive bond was analysed. The repeatability of attaching the monument at the same position with adhesive bond was tested. The monument was placed ten times in the same position as close as possible. The position of a SMR in the monument was then measured.
DOI: 10.15468/dl.agsfjx
title: Occurrence Download

description: A dataset containing 49998 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Lynx lynx (Linnaeus, 1758)",
 "Year 1901-2024"
 ]
}

 The dataset includes 49998 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037534-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3607421_d1.v1
title: MOESM2 of A comprehensive epigenome map of Plasmodium falciparum reveals unique mechanisms of transcriptional regulation and identifies H3K36me2 as a global mark of gene suppression

description: Additional file 2: Table S5. List of genes and their co-ordinates for each cluster is provided in a separate excel file.
DOI: 10.6084/m9.figshare.c.3607397_d3.v1
title: Additional file 14: of CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries

description: Table S11. Sequences of primers and oligos used for cloning of sgRNA libraries and sequencing. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3607421_d2.v1
title: MOESM3 of A comprehensive epigenome map of Plasmodium falciparum reveals unique mechanisms of transcriptional regulation and identifies H3K36me2 as a global mark of gene suppression

description: Additional file 3: Table S6. Co-ordinates for transcription start sites (TSSs) and transcription termination sites (TTSs) for all the Plasmodium falciparum genes.
DOI: 10.6084/m9.figshare.c.3607433_d7.v1
title: Additional file 17: Table S8. of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

description: SNP Information for RC Haplotypes. (XLSX 111Â kb)
DOI: 10.15468/dl.kwngjx
title: Occurrence Download

description: A dataset containing 77572 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Long-term cetacean monitoring in the Azores based on whale watching observations (2009-2020)"
 ]
}

 The dataset includes 77572 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037533-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.