cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13304906
title: Zebrafish embryos time-course, M&Z 5'UTRs scarb2c

description: This Zenodo file contains data for the maternal and zygotic 5′ UTR-scarb2c-sfGFP mRNA reporters. Data consists of raw microscopy images of embryos, as well as csv files with quantification of relative sfGFP expression data (normalized to a dextran dye control) and png files depicting ROIs used for quantification presented in Figure 7 of Reimão-Pinto et al., Dev Cell, 2024.

Embryos were injected with 1 nL of an injection mix directly into the cell at the 1-cell stage with a microinjection needle (Sutter Instruments) and allowed to develop in standard conditions. For single-reporter injections, 40pg 5′ UTR-sfGFP test reporter were co-injected with 2 ng fluorescent red dextran dye (D1868, Invitrogen) as injection control per embryo. Embryos were collected at the desired developmental stage and placed on a custom-made agarose mold with squared indents for placing and aligning the embryos. For fluorescence intensity quantification, zebrafish embryo images were acquired using an upright ZEISS Axiozoom coupled to an Axiocam 503 color/mono digital camera (14-bit depth) in black & white color mode with fixed laser power (red laser power 85% and 300 ms exposure; green laser power 65% and 300 ms exposure), fixed zoom and fixed exposure time for red mRF12 (590/612) and green AF488 (493/517) channels. Two rounds of single-reporter injections (embryos from two different clutches) were performed for fluorescence intensity quantifications.

Images were quantified using Fiji (Image J) using a macro for automated thresholding and channel fluorescence intensity measurement. For each image, the script automatically segments the image based on red channel intensity (control dextran dye) using FIJI’s auto thresholding tool (RenyiEntropy) and outputs csv files with mean fluorescence intensities of red and green channels for that region of interest (and a small invariant region for background correction). The mean fluorescence values outputted were then used for calculating normalized mean intensity ratios (sfGFP/dextran). A total of 25 embryos per injection round were quantified, for a total of 50 embryos per time-point, per reporter. This excel contains normalized fluorescence intensity values calculated. More embryos were quantified than the ones included in the analysis (due to unequal number of embryos imaged per experiment, we decided to consider a fixed number of 25 per reporter injection). Some embryos were not considered for normalized intensity calculations due to improper automatic segmentation (e.g. due to the presence of a background dirt spot that is recognized as "signal"), due to precipitation of the dextran dye in the embryo's chorion or due to improper embryo development resulting from injury from injection. All images acquired are available for inspection. The FIJI macro for automated segmentation and ROI intensity measurements are also provided in the Mendeley Repository associated to the study.
DOI: 10.5281/zenodo.13304907
title: Zebrafish embryos time-course, M&Z 5'UTRs scarb2c

description: This Zenodo file contains data for the maternal and zygotic 5′ UTR-scarb2c-sfGFP mRNA reporters. Data consists of raw microscopy images of embryos, as well as csv files with quantification of relative sfGFP expression data (normalized to a dextran dye control) and png files depicting ROIs used for quantification presented in Figure 7 of Reimão-Pinto et al., Dev Cell, 2024.

Embryos were injected with 1 nL of an injection mix directly into the cell at the 1-cell stage with a microinjection needle (Sutter Instruments) and allowed to develop in standard conditions. For single-reporter injections, 40pg 5′ UTR-sfGFP test reporter were co-injected with 2 ng fluorescent red dextran dye (D1868, Invitrogen) as injection control per embryo. Embryos were collected at the desired developmental stage and placed on a custom-made agarose mold with squared indents for placing and aligning the embryos. For fluorescence intensity quantification, zebrafish embryo images were acquired using an upright ZEISS Axiozoom coupled to an Axiocam 503 color/mono digital camera (14-bit depth) in black & white color mode with fixed laser power (red laser power 85% and 300 ms exposure; green laser power 65% and 300 ms exposure), fixed zoom and fixed exposure time for red mRF12 (590/612) and green AF488 (493/517) channels. Two rounds of single-reporter injections (embryos from two different clutches) were performed for fluorescence intensity quantifications.

Images were quantified using Fiji (Image J) using a macro for automated thresholding and channel fluorescence intensity measurement. For each image, the script automatically segments the image based on red channel intensity (control dextran dye) using FIJI’s auto thresholding tool (RenyiEntropy) and outputs csv files with mean fluorescence intensities of red and green channels for that region of interest (and a small invariant region for background correction). The mean fluorescence values outputted were then used for calculating normalized mean intensity ratios (sfGFP/dextran). A total of 25 embryos per injection round were quantified, for a total of 50 embryos per time-point, per reporter. This excel contains normalized fluorescence intensity values calculated. More embryos were quantified than the ones included in the analysis (due to unequal number of embryos imaged per experiment, we decided to consider a fixed number of 25 per reporter injection). Some embryos were not considered for normalized intensity calculations due to improper automatic segmentation (e.g. due to the presence of a background dirt spot that is recognized as "signal"), due to precipitation of the dextran dye in the embryo's chorion or due to improper embryo development resulting from injury from injection. All images acquired are available for inspection. The FIJI macro for automated segmentation and ROI intensity measurements are also provided in the Mendeley Repository associated to the study.
DOI: 10.15468/dl.kh48tm
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Veronica callitrichoides Kom."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016351-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13304890
title: Zebrafish embryos time-course, M&Z 5'UTRs cfl1l

description: This Zenodo file contains data for the maternal and zygotic 5′ UTR-cfl1l-sfGFP mRNA reporters. Data consists of raw microscopy images of embryos, as well as csv files with quantification of relative sfGFP expression data (normalized to a dextran dye control) and png files depicting ROIs used for quantification presented in Figure 7 of Reimão-Pinto et al., Dev Cell, 2024.

Embryos were injected with 1 nL of an injection mix directly into the cell at the 1-cell stage with a microinjection needle (Sutter Instruments) and allowed to develop in standard conditions. For single-reporter injections, 40pg 5′ UTR-sfGFP test reporter were co-injected with 2 ng fluorescent red dextran dye (D1868, Invitrogen) as injection control per embryo. Embryos were collected at the desired developmental stage and placed on a custom-made agarose mold with squared indents for placing and aligning the embryos. For fluorescence intensity quantification, zebrafish embryo images were acquired using an upright ZEISS Axiozoom coupled to an Axiocam 503 color/mono digital camera (14-bit depth) in black & white color mode with fixed laser power (red laser power 85% and 300 ms exposure; green laser power 65% and 300 ms exposure), fixed zoom and fixed exposure time for red mRF12 (590/612) and green AF488 (493/517) channels. Two rounds of single-reporter injections (embryos from two different clutches) were performed for fluorescence intensity quantifications.

Images were quantified using Fiji (Image J) using a macro for automated thresholding and channel fluorescence intensity measurement. For each image, the script automatically segments the image based on red channel intensity (control dextran dye) using FIJI’s auto thresholding tool (RenyiEntropy) and outputs csv files with mean fluorescence intensities of red and green channels for that region of interest (and a small invariant region for background correction). The mean fluorescence values outputted were then used for calculating normalized mean intensity ratios (sfGFP/dextran). A total of 25 embryos per injection round were quantified, for a total of 50 embryos per time-point, per reporter. This excel contains normalized fluorescence intensity values calculated. More embryos were quantified than the ones included in the analysis (due to unequal number of embryos imaged per experiment, we decided to consider a fixed number of 25 per reporter injection). Some embryos were not considered for normalized intensity calculations due to improper automatic segmentation (e.g. due to the presence of a background dirt spot that is recognized as "signal"), due to precipitation of the dextran dye in the embryo's chorion or due to improper embryo development resulting from injury from injection. All images acquired are available for inspection. The FIJI macro for automated segmentation and ROI intensity measurements are also provided in the Mendeley Repository associated to the study.
DOI: 10.5281/zenodo.13304891
title: Zebrafish embryos time-course, M&Z 5'UTRs cfl1l

description: This Zenodo file contains data for the maternal and zygotic 5′ UTR-cfl1l-sfGFP mRNA reporters. Data consists of raw microscopy images of embryos, as well as csv files with quantification of relative sfGFP expression data (normalized to a dextran dye control) and png files depicting ROIs used for quantification presented in Figure 7 of Reimão-Pinto et al., Dev Cell, 2024.

Embryos were injected with 1 nL of an injection mix directly into the cell at the 1-cell stage with a microinjection needle (Sutter Instruments) and allowed to develop in standard conditions. For single-reporter injections, 40pg 5′ UTR-sfGFP test reporter were co-injected with 2 ng fluorescent red dextran dye (D1868, Invitrogen) as injection control per embryo. Embryos were collected at the desired developmental stage and placed on a custom-made agarose mold with squared indents for placing and aligning the embryos. For fluorescence intensity quantification, zebrafish embryo images were acquired using an upright ZEISS Axiozoom coupled to an Axiocam 503 color/mono digital camera (14-bit depth) in black & white color mode with fixed laser power (red laser power 85% and 300 ms exposure; green laser power 65% and 300 ms exposure), fixed zoom and fixed exposure time for red mRF12 (590/612) and green AF488 (493/517) channels. Two rounds of single-reporter injections (embryos from two different clutches) were performed for fluorescence intensity quantifications.

Images were quantified using Fiji (Image J) using a macro for automated thresholding and channel fluorescence intensity measurement. For each image, the script automatically segments the image based on red channel intensity (control dextran dye) using FIJI’s auto thresholding tool (RenyiEntropy) and outputs csv files with mean fluorescence intensities of red and green channels for that region of interest (and a small invariant region for background correction). The mean fluorescence values outputted were then used for calculating normalized mean intensity ratios (sfGFP/dextran). A total of 25 embryos per injection round were quantified, for a total of 50 embryos per time-point, per reporter. This excel contains normalized fluorescence intensity values calculated. More embryos were quantified than the ones included in the analysis (due to unequal number of embryos imaged per experiment, we decided to consider a fixed number of 25 per reporter injection). Some embryos were not considered for normalized intensity calculations due to improper automatic segmentation (e.g. due to the presence of a background dirt spot that is recognized as "signal"), due to precipitation of the dextran dye in the embryo's chorion or due to improper embryo development resulting from injury from injection. All images acquired are available for inspection. The FIJI macro for automated segmentation and ROI intensity measurements are also provided in the Mendeley Repository associated to the study.
DOI: 10.6084/m9.figshare.27216315
title: GlobeDoc Wireframes 2010-2017.pdf

description: GlobeDoc Wireframes 2010-2017.
DOI: 10.15468/dl.btsgf7
title: Occurrence Download

description: A dataset listing the 2029 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Inventario Español de Especies Terrestres (MAGRAMA)"
 ]
}

 The dataset's 2029 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016343-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17617/4.et
title: Test for DOI

description: This is just for testing
DOI: 10.60681/whg-collection-50
title: The World of Olaudah Equiano (Gustavus Vassa), 1745-1797

description: Olaudah Equiano, also known as Gustavus Vassa, was born in the Kingdom of Benin, enslaved as a child, and spent his adult life as a sailor, writer, and abolitionist. His autobiography, The Interesting Narrative of the Life of Olaudah Equiano, published in 1789, is an important source for understanding enslaved and free lives in the eighteenth century.
DOI: 10.15468/dl.9pcpgg
title: Occurrence Download

description: A dataset containing 38458 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Veronica catenata Pennell"
 ]
}

 The dataset includes 38458 records from 496 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016353-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14168536
title: Vitellogenins level as a biomarker of the honey bee colony seasonal dynamics
DOI: 10.5281/zenodo.14168537
title: Vitellogenins level as a biomarker of the honey bee colony seasonal dynamics
DOI: 10.5285/dd8dee98-b75e-4b2f-a002-3f00bcc29d35
title: Strong relativistic electron flux events in GPS orbit (2000 - 2020)

description: Relativistic electrons cause internal charging on satellites and are a significant space weather hazard. In this study we analyse approximately 20 years of data from the US Global Positioning System (GPS) satellite NS41 to determine the conditions associated with the largest daily averaged fluxes of E = 2.0 MeV relativistic electrons. The largest flux events at L = 4.5 and L = 6.5 were associated with moderate to strong coronal mass ejection (CME)-driven geomagnetic storms. However, the majority of the fifty largest flux events at L = 4.5 (30 out of 50) and L = 6.5 (37 out of 50) were associated with high speed solar wind streams from coronal holes. Both solar drivers are thus very important for relativistic electron flux enhancements in GPS orbit. The 1 in 3 year flux level was not exceeded following any of the fifteen largest geomagnetic storms as monitored by the Dst index, showing that the largest geomagnetic storms, most often associated with extreme space weather, do not result in significantly larger relativistic electron flux events in GPS orbit.

The research leading to these results has received funding from the Natural Environment Research Council (NERC) grants NE/V00249X/1 (Sat-Risk), NE/X000389/1 and NE/R016038/1.
description: The data used in this study were collected by the Burst Detector Dosimeter IIR (BDD-IIR) on board the US GPS satellite NS41. The data is publicly available from http://www.ngdc.noaa.gov/stp/space-weather/satellite-data/satellite-systems/gps/data/ns41. Full details of the subsequent analysis are given in Meredith et al. (2024).
description: BDD-IIR is a multi-purpose silicon detector system. It features 8 individual channels of a "shield/filter/sensor" design that permits the detector to sample roughly half the celestial sphere while at the same time shielding the silicon sensor elements from most of the incident particle flux.
description: The particle data have been calibrated and quality-controlled prior to release.
DOI: 10.15468/dl.ksdtp5
title: Occurrence Download

description: A dataset containing 536 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Veronica nevadensis (Pau) Pau"
 ]
}

 The dataset includes 536 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016355-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ks7rr
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Veronica oetaea Gustavsson"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016356-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14162776
title: Future freshwater fluxes from the Antarctic ice sheet

description: ===============================================================Future freshwater fluxes from the Antarctic ice sheet (dataset)===============================================================

-----------------------INTRODUCTION-----------------------

This dataset contains historically-calibrated projections of Antarctic freshwater fluxes (ice-shelf melting, iceberg calving, and surface meltwater runoff) under low and very-high emission scenarios for 27 drainage basins and 5 ocean sectors until 2300.

We perform, with the Kori-ULB ice-sheet model v0.91, an ensemble of historically-calibrated simulations of the Antarctic ice sheet between 1990 and 2300 forced by atmospheric and oceanic projections inferred from a subset of models from the sixth phase of the Coupled Model Intercomparison Project (CMIP6) under low- and very high-emission scenarios. 

We refer to the associated manuscript for more information on the applied methodology.

-------------------------PROVIDED DATA-------------------------



'SSP126_FWF_1990_2300_ZwallyBasins.nc' and 'SSP585_FWF_1990_2300_ZwallyBasins.nc' each contain yearly timeseries of the [5 25 50 75 95] percentiles for the calibrated probabilistic projections of Antarctic net mass balance, surface mass balance, sub-shelf melt, and calving fluxes (in Gt/yr) for each of the 27 Zwally drainage basins (see http://imbie.org/imbie-2016/drainage-basins/) under a SSP1-2.6 and SSP5-8.5 scenario, respectively.

'SSP126_FWF_1990_2300_OceanSectors.nc' and 'SSP585_FWF_1990_2300_OceanSectors.nc' each contain yearly timeseries of the [5 25 50 75 95] percentiles for the calibrated probabilistic projections of Antarctic net mass balance, surface mass balance, sub-shelf melt, and calving fluxes (in Gt/yr) for each of the 5 ocean sectors (Weddell Sea, Indian Ocean, western Pacific Ocean, Ross Sea, Amundsen & Bellingshausen Sea) under a SSP1-2.6 and SSP5-8.5 scenario, respectively.

'SSP126_FWF_1990_2300_AIS.nc' and 'SSP585_FWF_1990_2300_AIS.nc' each contain yearly timeseries of the [5 25 50 75 95] percentiles for the calibrated probabilistic projections of Antarctic net mass balance, surface meltwater runoff, sub-shelf melt, and calving fluxes (in Gt/yr) for the Antarctic Ice Sheet under a SSP1-2.6 and SSP5-8.5 scenario, respectively.
DOI: 10.15468/dl.7apmhq
title: Occurrence Download

description: A dataset containing 230436 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "Country is Greenland",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 230436 records from 189 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016352-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25326/749
title: Monthly IASI/Metop-C ULB-LATMOS carbon monoxide (CO) L3 product (total column)

description: The monthly IASI/Metop-C carbon monoxide (CO) dataset is processed using the daily IASI/Metop-C CO L2 Interim Climate Data Record (ICDR) dataset, which is available on the AERIS website (https://iasi.aeris-data.fr/co).

The IASI/Metop-C CO L3 dataset contains monthly averaged CO gridded total columns with a latitude-longitude of 1 x 1 degrees and is  provided on the global scale from December 2019 till present.
DOI: 10.15468/dl.vs58gd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Aspidistra atrata Aver., Tillich & B.H.Quang)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016358-241107131044228/datasets/export for details.
DOI: 10.25326/750
title: Monthly IASI/Metop-A ULB-LATMOS carbon monoxide (CO) L3 product (total column)

description: The monthly IASI/Metop-A carbon monoxide (CO) dataset is processed using the daily IASI/Metop-A CO L2 Climate Data Record (CDR) dataset, which is available on the AERIS website (https://iasi.aeris-data.fr/co/).

The IASI/Metop-A CO L3 dataset contains monthly averaged CO gridded total columns with a latitude-longitude of 1 x 1 degrees and is  provided on the global scale from July 2007 till December 2019.
DOI: 10.18150/uiq5oy
title: analiza XPS polimerów, wpływ tlenu na proces elektropolimeryzacji

description: dot. analiza XPS polimerów, wpływ tlenu na proces elektropolimeryzacji;pliki otrzymane ze spektrometru XPS model Axis Supra+, na oprogramowaniuVersatile ESCApe software
DOI: 10.15468/dl.5a3wra
title: Occurrence Download

description: A dataset containing 101233851 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is iNaturalist Research-grade Observations"
 ]
}

 The dataset includes 101233851 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016278-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5t43jf3c
title: MassIVE MSV000096422 - LC/MS-MS data for proteomics_M
title: A comprehensive study of sperm proteins and metabolites potentially associated with higher fertility of Zebu cattle (Bos indicus) in tropical areas
DOI: 10.5281/zenodo.14072832
title: Matecat User Guide (EN)

description: Guide to use the CAT tool Matecat in English.
DOI: 10.5281/zenodo.14072833
title: Matecat User Guide (EN)

description: Guide to use the CAT tool Matecat in English.
DOI: 10.18150/ukigj0
title: analiza IR dla warstw polimerów perymidynowych dwufunkcyjnych

description: dot. analiza IR dla warstw polimerów perymidynowych dwufunkcyjnych;pliki otrzymane ze spektrometru IR ATR-FTIR Perkin Elmer, przy użyciu SpectrumTM 10 software
DOI: 10.6084/m9.figshare.27750753.v1
title: scRNA_harmonyTNM.RDS

description: Tumor-associated fibroblasts (CAFs) regulate tumorigenesis, tumor cell proliferation and metastasis via secreting related regulatory factors
DOI: 10.18150/x2uoal
title: Elektrochemia i spektroelektrochemia pochodnych A (podstawionych etylową grupą)

description: dot. Elektrochemia i spektroelektrochemia pochodnych A (podstawionych etylową grupą);pliki uzyskane na potencjostacie Autolab 302N po konwersji do plików tekstowych w programie NOVA 2.1