cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.28nwtb
title: Occurrence Download

description: A dataset containing 496669 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 countrycode countrycode,
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, countrycode, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, countrycode, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, countrycode, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, countrycode, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, countrycode, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, countrycode, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.basisofrecord IN ('HUMAN_OBSERVATION', 'PRESERVED_SPECIMEN')
 AND occurrence.countrycode = 'BR'
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence."year" &gt;= 2000 AND occurrence."year" &lt;= 2024)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL AND occurrence.hascoordinate = TRUE)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year",
 occurrence.countrycode

 The dataset's 496669 records were derived from 874 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023194-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17214121
title: Totally Unimodular Node–Arc Incidence Matrices: Small Collection (50 - 1000 nodes)

description:  

This dataset contains a collection of totally unimodular (TU) node–arc incidence matrices, generated from random directed graphs with node counts between 50 and 1000. Each column of the incidence matrix has exactly one +1 (arc tail) and one –1 (arc head). Because of the TU property, all linear programming relaxations of integer flow problems are guaranteed to have integer solutions.

The dataset includes:



matrices.csv: sparse representation of all instances (two rows per arc, +1 and –1).

metadata.csv: summary of each instance (nodes, arcs, density).

Conversion scripts (make_dat_all.py, make_dat_all.R) to produce .dat files for AMPL or other solvers.


Typical applications include teaching (small cases), benchmarking network flow and minimum-cost flow solvers, and studying algorithmic scalability.
DOI: 10.5281/zenodo.17214122
title: Totally Unimodular Node–Arc Incidence Matrices: Small Collection (50 - 1000 nodes)

description:  

This dataset contains a collection of totally unimodular (TU) node–arc incidence matrices, generated from random directed graphs with node counts between 50 and 1000. Each column of the incidence matrix has exactly one +1 (arc tail) and one –1 (arc head). Because of the TU property, all linear programming relaxations of integer flow problems are guaranteed to have integer solutions.

The dataset includes:



matrices.csv: sparse representation of all instances (two rows per arc, +1 and –1).

metadata.csv: summary of each instance (nodes, arcs, density).

Conversion scripts (make_dat_all.py, make_dat_all.R) to produce .dat files for AMPL or other solvers.


Typical applications include teaching (small cases), benchmarking network flow and minimum-cost flow solvers, and studying algorithmic scalability.
DOI: 10.15468/dl.344xay
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ipomoea quamoclit",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 72 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023214-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a6568g
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Syzygium malaccense",
 "Country is Cook Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023217-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.db2v7n
title: Occurrence Download

description: A dataset containing 202 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Syzygium malaccense",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 202 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023215-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x6nbcv
title: Occurrence Download

description: A dataset containing 284 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Syzygium malaccense",
 "Country is Colombia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 284 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023216-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.31982.33601
title: Control de Constitucionalidad
DOI: 10.13140/rg.2.2.33528.98567
title: strategy of 1739 campaign
DOI: 10.13140/rg.2.2.14025.47201
title: 137 Sequenced Cases as of 28NOV2021 VOC Omicron GR/484A (B.1.1.529) First Detected Botswana/Hong Kong/South Africa - now including Italy/Israel/Belgium/Australia/and England
DOI: 10.13140/rg.2.2.10984.60161
title: R code for the Crowdfunder Model
DOI: 10.13140/rg.2.2.10303.02728
title: A HIGH TECH PARA DROP OPERATION AT CHILAS BY US AIRFORCE THEN INTERESTED IN DEOSAI AS AN AIRBASE TO WATCH BOTH CHINA AND CENTRAL ASIA- INITIALLY NARRATED BY MY UNCLE MAJ GEN AGHA M RAUF –THE BELOW PASSAGE FROM HIST OF KKH
DOI: 10.13140/rg.2.2.36117.65764
title: First version of individual based co-evolution model
DOI: 10.6084/m9.figshare.26594225.v1
title: Additional file 3 of Biotite: new tools for a versatile Python bioinformatics library

description: Additional file 3. Benchmark workflow.
DOI: 10.6084/m9.figshare.26658298
title: Additional file 3 of Genome-wide identification, characterization, and expression analysis of m6A readers-YTH domain-containing genes in alfalfa

description: Additional file 3: Table S3. Synonymous and Non-Synonymous substitution rates (Ka/Ks) for corresponding gene pairs within the alfalfa YTH gene family.
DOI: 10.6084/m9.figshare.26658298.v1
title: Additional file 3 of Genome-wide identification, characterization, and expression analysis of m6A readers-YTH domain-containing genes in alfalfa

description: Additional file 3: Table S3. Synonymous and Non-Synonymous substitution rates (Ka/Ks) for corresponding gene pairs within the alfalfa YTH gene family.
DOI: 10.6084/m9.figshare.26566547.v1
title: Additional file 3 of Transcriptomics-proteomics Integration reveals alternative polyadenylation driving inflammation-related protein translation in patients with diabetic nephropathy

description: Additional file 3: Tables S2. The primers for qRT-PCR and overexpression vector.
DOI: 10.6084/m9.figshare.26566553.v1
title: Additional file 5 of Transcriptomics-proteomics Integration reveals alternative polyadenylation driving inflammation-related protein translation in patients with diabetic nephropathy

description: Additional file 5: Tables S4. The transcriptomics and proteomics data analysis.
DOI: 10.6084/m9.figshare.26566556
title: Additional file 6 of Transcriptomics-proteomics Integration reveals alternative polyadenylation driving inflammation-related protein translation in patients with diabetic nephropathy

description: Additional file 6: Tables S5. The protein-per-mRNA FC ratio analysis.
DOI: 10.6084/m9.figshare.26566556.v1
title: Additional file 6 of Transcriptomics-proteomics Integration reveals alternative polyadenylation driving inflammation-related protein translation in patients with diabetic nephropathy

description: Additional file 6: Tables S5. The protein-per-mRNA FC ratio analysis.
DOI: 10.6084/m9.figshare.26658307
title: Additional file 2 of A de novo long-read genome assembly of the sacred datura plant (Datura wrightii) reveals a role of tandem gene duplications in the evolution of herbivore-defense response

description: Additional file 2: Table S1. Summary statistics obtained from Inspector before and after assembly polishing.
DOI: 10.6084/m9.figshare.26658307.v1
title: Additional file 2 of A de novo long-read genome assembly of the sacred datura plant (Datura wrightii) reveals a role of tandem gene duplications in the evolution of herbivore-defense response

description: Additional file 2: Table S1. Summary statistics obtained from Inspector before and after assembly polishing.
DOI: 10.6084/m9.figshare.26658310
title: Additional file 3 of A de novo long-read genome assembly of the sacred datura plant (Datura wrightii) reveals a role of tandem gene duplications in the evolution of herbivore-defense response

description: Additional file 3: Table S2. Repeat content statistics obtained from RepeatMasker.
DOI: 10.6084/m9.figshare.26658310.v1
title: Additional file 3 of A de novo long-read genome assembly of the sacred datura plant (Datura wrightii) reveals a role of tandem gene duplications in the evolution of herbivore-defense response

description: Additional file 3: Table S2. Repeat content statistics obtained from RepeatMasker.
DOI: 10.6084/m9.figshare.26658313
title: Additional file 4 of A de novo long-read genome assembly of the sacred datura plant (Datura wrightii) reveals a role of tandem gene duplications in the evolution of herbivore-defense response

description: Additional file 4: Table S3. Detailed summary statistics of genome annotation.
DOI: 10.6084/m9.figshare.26658313.v1
title: Additional file 4 of A de novo long-read genome assembly of the sacred datura plant (Datura wrightii) reveals a role of tandem gene duplications in the evolution of herbivore-defense response

description: Additional file 4: Table S3. Detailed summary statistics of genome annotation.
DOI: 10.6084/m9.figshare.26658316
title: Additional file 5 of A de novo long-read genome assembly of the sacred datura plant (Datura wrightii) reveals a role of tandem gene duplications in the evolution of herbivore-defense response

description: Additional file 5: Table S4. Mapping statistics of RNA-seq reads.
DOI: 10.6084/m9.figshare.26658316.v1
title: Additional file 5 of A de novo long-read genome assembly of the sacred datura plant (Datura wrightii) reveals a role of tandem gene duplications in the evolution of herbivore-defense response

description: Additional file 5: Table S4. Mapping statistics of RNA-seq reads.
DOI: 10.6084/m9.figshare.26658319
title: Additional file 6 of A de novo long-read genome assembly of the sacred datura plant (Datura wrightii) reveals a role of tandem gene duplications in the evolution of herbivore-defense response

description: Additional file 6: Table S5. Detailed gene-wise results of pairwise differential expression analysis.
DOI: 10.6084/m9.figshare.26658319.v1
title: Additional file 6 of A de novo long-read genome assembly of the sacred datura plant (Datura wrightii) reveals a role of tandem gene duplications in the evolution of herbivore-defense response

description: Additional file 6: Table S5. Detailed gene-wise results of pairwise differential expression analysis.
DOI: 10.6084/m9.figshare.26658322
title: Additional file 7 of A de novo long-read genome assembly of the sacred datura plant (Datura wrightii) reveals a role of tandem gene duplications in the evolution of herbivore-defense response

description: Additional file 7: Table S6. Detailed results of gene set enrichment analysis.
DOI: 10.6084/m9.figshare.26658322.v1
title: Additional file 7 of A de novo long-read genome assembly of the sacred datura plant (Datura wrightii) reveals a role of tandem gene duplications in the evolution of herbivore-defense response

description: Additional file 7: Table S6. Detailed results of gene set enrichment analysis.
DOI: 10.6084/m9.figshare.26658325
title: Additional file 8 of A de novo long-read genome assembly of the sacred datura plant (Datura wrightii) reveals a role of tandem gene duplications in the evolution of herbivore-defense response

description: Additional file 8: Table S7. Detailed results of time course analysis.
DOI: 10.6084/m9.figshare.26658325.v1
title: Additional file 8 of A de novo long-read genome assembly of the sacred datura plant (Datura wrightii) reveals a role of tandem gene duplications in the evolution of herbivore-defense response

description: Additional file 8: Table S7. Detailed results of time course analysis.
DOI: 10.6084/m9.figshare.26658328
title: Additional file 9 of A de novo long-read genome assembly of the sacred datura plant (Datura wrightii) reveals a role of tandem gene duplications in the evolution of herbivore-defense response

description: Additional file 9: Table S8. Results of duplication classification analysis.
DOI: 10.6084/m9.figshare.26658328.v1
title: Additional file 9 of A de novo long-read genome assembly of the sacred datura plant (Datura wrightii) reveals a role of tandem gene duplications in the evolution of herbivore-defense response

description: Additional file 9: Table S8. Results of duplication classification analysis.
DOI: 10.6084/m9.figshare.26658331
title: Additional file 10 of A de novo long-read genome assembly of the sacred datura plant (Datura wrightii) reveals a role of tandem gene duplications in the evolution of herbivore-defense response

description: Additional file 10: Table S9. Detailed results of duplication type over-representation analysis (total gene content).
DOI: 10.6084/m9.figshare.26658331.v1
title: Additional file 10 of A de novo long-read genome assembly of the sacred datura plant (Datura wrightii) reveals a role of tandem gene duplications in the evolution of herbivore-defense response

description: Additional file 10: Table S9. Detailed results of duplication type over-representation analysis (total gene content).
DOI: 10.6084/m9.figshare.26658334
title: Additional file 11 of A de novo long-read genome assembly of the sacred datura plant (Datura wrightii) reveals a role of tandem gene duplications in the evolution of herbivore-defense response

description: Additional file 11: Table S10. Detailed results of duplication type over-representation analysis (differentially expressed genes only).
DOI: 10.6084/m9.figshare.26658334.v1
title: Additional file 11 of A de novo long-read genome assembly of the sacred datura plant (Datura wrightii) reveals a role of tandem gene duplications in the evolution of herbivore-defense response

description: Additional file 11: Table S10. Detailed results of duplication type over-representation analysis (differentially expressed genes only).
DOI: 10.6084/m9.figshare.26658340
title: Additional file 1 of Novel insight into lepidopteran phylogenetics from the mitochondrial genome of the apple fruit moth of the family Argyresthiidae

description: Additional file 1: Table S1. List of mitochondrial genomes of Lepidoptera (including A. conjugella mitochondrial genome) investigated in the study, representing 18 superfamilies and 42 families (Supplementary Figure S2), including outgroups species ( Phryganea cinerea, Phryganopsyche latipennis, Cheumatopsyche brevilineata, Limnephilus hyalinus, and Stenopsyche angustata).
DOI: 10.6084/m9.figshare.26658340.v1
title: Additional file 1 of Novel insight into lepidopteran phylogenetics from the mitochondrial genome of the apple fruit moth of the family Argyresthiidae

description: Additional file 1: Table S1. List of mitochondrial genomes of Lepidoptera (including A. conjugella mitochondrial genome) investigated in the study, representing 18 superfamilies and 42 families (Supplementary Figure S2), including outgroups species ( Phryganea cinerea, Phryganopsyche latipennis, Cheumatopsyche brevilineata, Limnephilus hyalinus, and Stenopsyche angustata).
DOI: 10.6084/m9.figshare.26658343
title: Additional file 2 of Novel insight into lepidopteran phylogenetics from the mitochondrial genome of the apple fruit moth of the family Argyresthiidae

description: Additional file 2: Table S2. Results of two-tailed tests of substitution saturation for each codon position of the 13 PCGs. The following abbreviations were used: index of substitution saturation (ISS), critical value of ISS supposing symmetrical cladogenesis (ISS.CSym.), critical value of ISS supposing asymmetrical cladogenesis (ISS.CAsym.).
DOI: 10.6084/m9.figshare.26658343.v1
title: Additional file 2 of Novel insight into lepidopteran phylogenetics from the mitochondrial genome of the apple fruit moth of the family Argyresthiidae

description: Additional file 2: Table S2. Results of two-tailed tests of substitution saturation for each codon position of the 13 PCGs. The following abbreviations were used: index of substitution saturation (ISS), critical value of ISS supposing symmetrical cladogenesis (ISS.CSym.), critical value of ISS supposing asymmetrical cladogenesis (ISS.CAsym.).
DOI: 10.15468/dl.vzxsve
title: Occurrence Download

description: A dataset containing 5839 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (EOD – eBird Observation Dataset, Artportalen, iNaturalist Research-grade Observations, Observation.org, Nature data from around the World, DOF/BirdLife Denmark - Observations from DOFbasen, Norwegian Species Observation Service, Macro-moth distribution records for the UK from Butterfly Conservation, up to 2019, INPN - Données flore des CBN agrégées par la FCBN, Southern African Bird Atlas Project 2, NABU|naturgucker, INSDC Sequences, Pl@ntNet automatically identified occurrences, Great Backyard Bird Count, Pl@ntNet observations, eButterfly Surveys, Xerces Society - Bumble Bee Watch, Royal Ontario Museum - Entomology Collection)",
 "Geometry POLYGON((-80.46763 43.45625,-80.43739 43.45625,-80.43739 43.47867,-80.46763 43.47867,-80.46763 43.45625))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 5839 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019635-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14750572
title: Data underpinning the publication "Optical tuning of dielectric nanoantennas for thermo-optically reconfigurable nonlinear metasurfaces"
DOI: 10.5281/zenodo.14750573
title: Data underpinning the publication "Optical tuning of dielectric nanoantennas for thermo-optically reconfigurable nonlinear metasurfaces"
DOI: 10.5281/zenodo.14833542
title: Data underpinning the publication "Optical tuning of dielectric nanoantennas for thermo-optically reconfigurable nonlinear metasurfaces"
DOI: 10.5281/zenodo.14833525
title: Shape Files (.shp) for bidding zones in Germany proposed by ACER
DOI: 10.5281/zenodo.14833526
title: Shape Files (.shp) for bidding zones in Germany proposed by ACER
DOI: 10.17909/77qc-fs28
title: CEERS NIRSpec Daata
DOI: 10.5281/zenodo.12748982
title: STURM-Flood

description: This repository hosts the STURM-Flood dataset, an open-access resource designed for flood extent mapping using Sentinel-1 and Sentinel-2 satellite imagery. The dataset comprises 21,602 Sentinel-1 tiles and 2,675 Sentinel-2 tiles, each of size 128 × 128 pixels at a resolution of 10 meters, along with corresponding water masks covering 60 flood events globally. This curated dataset is optimized for deep learning applications and provides ground-truth data from the Copernicus Emergency Management Service to facilitate robust model development. We invite researchers and developers to utilize this resource for advancing flood mapping techniques in disaster management. For further details on the methodology, results, and implementation, please refer to our study published in Big Earth Data (2096-4471): https://doi.org/10.1080/20964471.2025.2458714 .
DOI: 10.6084/m9.figshare.25514849
title: Empathy in family medicine postgraduate education: A mixed studies systematic review

description: Empathy is an important construct in patient-physician relationships, particularly critical in family physicians’ daily practice. We aimed to understand how empathy has been conceived and integrated into family medicine postgraduate training. Medline, PsyINFO, and Embase were searched in this systematic mixed studies systematic review. Two independent reviewers screened abstracts and full texts. Disagreements were solved through research team consensus-based discussion. Included studies were synthesized thematically. A total of 18 studies were included. Four themes were identified. <i>(1) Empathy definition.</i> Included studies stressed the cognitive component of empathy, paired either with a behavioural or an affective response. <i>(2) Empathy modifiers.</i> Starting residency right after medical school, having a role model, having high empathy levels before residency, having children, being married, and being exposed to patient involvement in education were found to have a positive impact on empathy. <i>(3) Empathy-burnout relationship.</i> Whereas greater burnout was related to lower empathy levels, excess empathy seems to favour burnout through ‘compassion fatigue.’ <i>(4) Educational programs for empathy development.</i> Five programs were identified: a communication workshop, a patient-led program, a mindfulness program, a family-oriented intervention, and an arts-based program. Studies mostly measured the cognitive component of empathy. The moral component of empathy was underrepresented in the conceptualization of empathy and the development of educational interventions. Conflicting evidence exists regarding the decline of empathy levels during the family medicine residency. Longitudinal designs should be privileged when exploring the evolution of empathy levels across the continuum of medical education.