cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1794392.08fu
title: SH1794392.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh427459.07fu
title: SH427459.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh427460.07fu
title: SH427460.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.26093/cds/vizier.51321361
title: RR Lyrae variables in M33

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'RR Lyrae variables in M33. I. Evidence for a field halo population.' (bibcode: 2006AJ....132.1361S)
DOI: 10.15156/bio/sh1794393.08fu
title: SH1794393.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1794394.08fu
title: SH1794394.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh427461.07fu
title: SH427461.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh427462.07fu
title: SH427462.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.26093/cds/vizier.51320137
title: Abundances of extremely metal-poor carbon stars

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Carbon stars in the Hamburg/ESO survey: abundances.' (bibcode: 2006AJ....132..137C)
DOI: 10.6084/m9.figshare.14443275.v1
title: Additional file 18 of Microbial community structure and composition is associated with host species and sex in Sigmodon cotton rats

description: Additional file 18: Supplemental File 8. All annotated MetaCyc pathways identified by HUMANn2 from whole metagenomic sequencing data.
DOI: 10.6084/m9.figshare.7105133
title: Zhang et al WRR_Data.xlsx

description: The data necessary to reproduce the conclusions of our manuscript "Spatial Variability and Temporal Persistence of Event Runoff Coefficients over Agricultural Land".
DOI: 10.6084/m9.figshare.21259010
title: Additional file 3 of Correlation study on serum miR-222-3p and glucose and lipid metabolism in patients with polycystic ovary syndrome

description: Additional file 3. Original data for Fig. 1 and Fig. 2.
DOI: 10.6084/m9.figshare.21259010.v1
title: Additional file 3 of Correlation study on serum miR-222-3p and glucose and lipid metabolism in patients with polycystic ovary syndrome

description: Additional file 3. Original data for Fig. 1 and Fig. 2.
DOI: 10.6084/m9.figshare.11299469
title: MOESM7 of Auxin and cytokinin coordinate the dormancy and outgrowth of axillary bud in strawberry runner

description: Additional file 7: Table S3 DEGs identified between FvDB and FvNDB. Table S4 DEGs identified between FvDB and FpNDB. Table S5. DEGs identified between FvNDB and FpNDB
DOI: 10.6084/m9.figshare.11299469.v1
title: MOESM7 of Auxin and cytokinin coordinate the dormancy and outgrowth of axillary bud in strawberry runner

description: Additional file 7: Table S3 DEGs identified between FvDB and FvNDB. Table S4 DEGs identified between FvDB and FpNDB. Table S5. DEGs identified between FvNDB and FpNDB
DOI: 10.6084/m9.figshare.11299475
title: MOESM8 of Auxin and cytokinin coordinate the dormancy and outgrowth of axillary bud in strawberry runner

description: Additional file 8: Table S6. Four hundred thirty nine core DEGs response for the transcriptome differences between FvDB and both NDB tissues in Fragaria vesca Hawaii-4 and Fragaria pentaphylla. Table S7. The expression data of phytohormone-related genes corresponding to Fig. 3a. Table S8. The expression data of transcription factors corresponding to Fig. 3b
DOI: 10.6084/m9.figshare.11299475.v1
title: MOESM8 of Auxin and cytokinin coordinate the dormancy and outgrowth of axillary bud in strawberry runner

description: Additional file 8: Table S6. Four hundred thirty nine core DEGs response for the transcriptome differences between FvDB and both NDB tissues in Fragaria vesca Hawaii-4 and Fragaria pentaphylla. Table S7. The expression data of phytohormone-related genes corresponding to Fig. 3a. Table S8. The expression data of transcription factors corresponding to Fig. 3b
DOI: 10.6084/m9.figshare.11299481
title: MOESM9 of Auxin and cytokinin coordinate the dormancy and outgrowth of axillary bud in strawberry runner

description: Additional file 9: Table S9. The primers list used in this study.
DOI: 10.6084/m9.figshare.11299481.v1
title: MOESM9 of Auxin and cytokinin coordinate the dormancy and outgrowth of axillary bud in strawberry runner

description: Additional file 9: Table S9. The primers list used in this study.
DOI: 10.34740/kaggle/dsv/2918196
title: Estimation of obesity levels UCI dataset
DOI: 10.6084/m9.figshare.25151702
title: Systematic review of epidemiological and toxicological evidence on health effects of fluoride in drinking water

description: Fluoride is a naturally occurring substance that is also added to drinking water, dental hygiene products, and food supplements for preventing dental caries. Concerns have been raised about several other potential health risks of fluoride. To conduct a robust synthesis of evidence regarding human health risks due to exposure to fluoride in drinking water, and to develop a point of departure (POD) for setting a health-based value (HBV) for fluoride in drinking water. A systematic review of evidence published since recent reviews of human, animal, and <i>in vitro</i> data was carried out. Bradford Hill considerations were used to weigh the evidence for causality. Several key studies were considered for deriving PODs. The current review identified 89 human studies, 199 animal studies, and 10 major <i>in vitro</i> reviews. The weight of evidence on 39 health endpoints was presented. In addition to dental fluorosis, evidence was considered strong for reduction in IQ scores in children, moderate for thyroid dysfunction, weak for kidney dysfunction, and limited for sex hormone disruptions. The current review identified moderate dental fluorosis and reduction in IQ scores in children as the most relevant endpoints for establishing an HBV for fluoride in drinking water. PODs were derived for these two endpoints, although there is still some uncertainty in the causal weight of evidence for causality for reducing IQ scores in children and considerable uncertainty in the derivation of its POD. Given our evaluation of the overall weight of evidence, moderate dental fluorosis is suggested as the key endpoint until more evidence is accumulated on possible reduction of IQ scores effects. A POD of 1.56 mg fluoride/L for moderate dental fluorosis may be preferred as a starting point for setting an HBV for fluoride in drinking water to protect against moderate and severe dental fluorosis. Although outside the scope of the current review, precautionary concerns for potential neurodevelopmental cognitive effects may warrant special consideration in the derivation of the HBV for fluoride in drinking water.
DOI: 10.6084/m9.figshare.25151702.v1
title: Systematic review of epidemiological and toxicological evidence on health effects of fluoride in drinking water

description: Fluoride is a naturally occurring substance that is also added to drinking water, dental hygiene products, and food supplements for preventing dental caries. Concerns have been raised about several other potential health risks of fluoride. To conduct a robust synthesis of evidence regarding human health risks due to exposure to fluoride in drinking water, and to develop a point of departure (POD) for setting a health-based value (HBV) for fluoride in drinking water. A systematic review of evidence published since recent reviews of human, animal, and <i>in vitro</i> data was carried out. Bradford Hill considerations were used to weigh the evidence for causality. Several key studies were considered for deriving PODs. The current review identified 89 human studies, 199 animal studies, and 10 major <i>in vitro</i> reviews. The weight of evidence on 39 health endpoints was presented. In addition to dental fluorosis, evidence was considered strong for reduction in IQ scores in children, moderate for thyroid dysfunction, weak for kidney dysfunction, and limited for sex hormone disruptions. The current review identified moderate dental fluorosis and reduction in IQ scores in children as the most relevant endpoints for establishing an HBV for fluoride in drinking water. PODs were derived for these two endpoints, although there is still some uncertainty in the causal weight of evidence for causality for reducing IQ scores in children and considerable uncertainty in the derivation of its POD. Given our evaluation of the overall weight of evidence, moderate dental fluorosis is suggested as the key endpoint until more evidence is accumulated on possible reduction of IQ scores effects. A POD of 1.56 mg fluoride/L for moderate dental fluorosis may be preferred as a starting point for setting an HBV for fluoride in drinking water to protect against moderate and severe dental fluorosis. Although outside the scope of the current review, precautionary concerns for potential neurodevelopmental cognitive effects may warrant special consideration in the derivation of the HBV for fluoride in drinking water.
DOI: 10.6084/m9.figshare.11299565
title: MOESM2 of Fhl1p protein, a positive transcription factor in Pichia pastoris, enhances the expression of recombinant proteins

description: Additional file 2. List of significantly upregulated and downregulated genes in 4 pel/AF in comparison to 4 pel. GO term enrichment was analyzed using AmiGO GO Slimmer [44]. Significantly upregulated and downregulated GO terms were determined by GO term Finder (P &lt; 0.01).
DOI: 10.6084/m9.figshare.11299565.v1
title: MOESM2 of Fhl1p protein, a positive transcription factor in Pichia pastoris, enhances the expression of recombinant proteins

description: Additional file 2. List of significantly upregulated and downregulated genes in 4 pel/AF in comparison to 4 pel. GO term enrichment was analyzed using AmiGO GO Slimmer [44]. Significantly upregulated and downregulated GO terms were determined by GO term Finder (P &lt; 0.01).
DOI: 10.6084/m9.figshare.11299577
title: MOESM4 of Fhl1p protein, a positive transcription factor in Pichia pastoris, enhances the expression of recombinant proteins

description: Additional file 4. The annotation of proteins from various protein synthesis pathways that are differentially expressed.
DOI: 10.6084/m9.figshare.11299577.v1
title: MOESM4 of Fhl1p protein, a positive transcription factor in Pichia pastoris, enhances the expression of recombinant proteins

description: Additional file 4. The annotation of proteins from various protein synthesis pathways that are differentially expressed.
DOI: 10.6084/m9.figshare.11299586
title: MOESM5 of Fhl1p protein, a positive transcription factor in Pichia pastoris, enhances the expression of recombinant proteins

description: Additional file 5. P. pastoris genes with putative Fhl1p binding site(s). Search field: − 1000 bp upstream of the P. pastoris GS115 coding sequences. The binding motif of ScFhl1p is GACGC. Genes were categorized into biological function GO-Terms using AmiGO GO Slimmer (Yeast GO slim set, [44]).
DOI: 10.6084/m9.figshare.11299586.v1
title: MOESM5 of Fhl1p protein, a positive transcription factor in Pichia pastoris, enhances the expression of recombinant proteins

description: Additional file 5. P. pastoris genes with putative Fhl1p binding site(s). Search field: − 1000 bp upstream of the P. pastoris GS115 coding sequences. The binding motif of ScFhl1p is GACGC. Genes were categorized into biological function GO-Terms using AmiGO GO Slimmer (Yeast GO slim set, [44]).
DOI: 10.6084/m9.figshare.14445363
title: Chemotaxis and Swarming in neutrophils

description: The human leukemia cell line (HL-60) is an alternative to primary neutrophils in research studies. However, because HL-60 cells proliferate in an incompletely differentiated state, they must undergo differentiation before they acquire the functional properties of neutrophils. Here we provide evidence of swarming and chemotaxis in differentiated HL-60 neutrophil-like cells (dHL-60) using precise microfluidic assays. We found that dimethyl sulfoxide differentiated HL-60 cells (DdHL-60) have a larger size, increased length, and lower ability to squeeze through narrow channels compared to primary neutrophils. They migrate through tapered microfluidic channels slower than primary neutrophils, but faster than HL-60s differentiated by other protocols, e.g., using all-trans retinoic acid. We found that dHL-60 can swarm toward zymosan particle clusters, though they display disorganized migratory patterns and produce swarms of smaller size compared to primary neutrophils.
DOI: 10.5066/p9tghqwb
title: Tissue-specific bioconcentration of per- and polyfluoroalkyl substances by fathead minnows from contaminated groundwater at a fire-training area, Cape Cod, Massachusetts from 2019

description: This data release presents chemical and biological results from an investigation of the uptake of per- and polyfluoroalkyl substances (PFAS) from groundwater contaminated by fire training activities on Cape Cod, Massachusetts conducted from July to August 2019. An exposure experiment was conducted at an a PFAS contaminated site (FTA-1) near the fire training area (FTA). To assess the tissue-specific uptake characteristics of the mixture of PFAS present in the groundwater from the FTA-1 site, a 21-day mobile laboratory exposure experiment was conducted. Details for the groundwater sampling sites and well construction are presented (Table 1). The PFAS mixture concentrations and composition in groundwater and in fish tissues was evaluated using 2 separate analytical methods (Table 2). PFAS quality assurance data are presented in Table 3. Water and tissue samples were collected on days 1, 7, and 21. Water chemistry results for target PFAS analysis are summarized in Table 4. Water chemistry results for suspect PFAS analysis are summarized in Table 5. Fish morphometric data are summarized in Table 6. Fish tissue PFAS target analysis results are presented in Table 7. Fish tissue PFAS suspect analysis results are presented in Table 8.
DOI: 10.6084/m9.figshare.14445621
title: Zhang et al. (2021). Journal of Geophysical Research-Solid Earth

description: The supporting information
includes 6 figures and 15 tables. The Table S1-13 includes whole-rock major and
trace elements and Sr–Nd–Pb–Hf isotope ratios for the Lijiang picrites,
Emeishan LIP; compositions of olivine phenocrysts and melt inclusions from the
Lijiang picrites; trace element and Pb isotope compositions of Lijiang melt
inclusions. Table S14 is the parameters used in isotopic modeling. Table S15 is
the parameter used in the Tp calculation.

Related publication: Zhang, L., Ren, Z. Y., Zhang, L., Wu, Y. D.,
Qian, S. P., Xia, X. P. & Xu, Y. G. (2021). Nature of the Mantle Plume
under the Emeishan Large Igneous Province: Constraints from Olivine-hosted Melt
Inclusions of the Lijiang Picrites. <i>Journal of Geophysical
Research–Solid Earth</i>. https://doi.org/10.1029/2020JB021022
DOI: 10.6084/m9.figshare.22309946
title: A fast grid generation algorithm for local irregular parts of hexagonal discrete global grid systems

description: Discrete Global Grid Systems (DGGS) provide a multi-resolution discrete representation of the Earth and are preferable for the organization, integration, and analysis of large and multi-source geospatial datasets. Generating grids for the area of interest is usually the premise and basis for DGGS applications. Owing to incongruent hierarchies that restrict the multi-resolution applications of hexagonal DGGS, current grid generation of hexagonal DGGS for local areas mainly depends on inefficient single-resolution traversal methods by judging the spatial relationship between each cell and the area. This study designs a fast generation algorithm for local parts of hexagonal DGGS based on the hierarchical properties of DGGS. A partition structure at intervals of multiple levels is first designed to ensure the coverage relevance between parent and children cells of different levels. Based on this structure, the algorithm begins with coarser resolution grids and recursively decomposes them into the target resolution, with multiple decomposition patterns used and a unique condition proposed to make the generated grids without gaps or overlaps. Efficient integer coordinate operations are used to generate the vast majority of cells. Experimental results show that the proposed algorithm achieves a significant improvement in efficiency. In the aperture 4 hexagonal DGGS, the efficiency ratio of the proposed and traversal algorithms increases from six times in level 14 to approximately 339 times in level 18. This study provides a solid foundation for subsequent data quantization and multi-resolution applications in hexagonal DGGS and has broad prospects.