cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2ff0jf
title: CCDC 2246834: Experimental Crystal Structure Determination

description: Related Article: Constantin G. Daniliuc, Doris Hüerländer, Roland Fröhlich, Gerhard Erker|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ff355
title: CCDC 2246916: Experimental Crystal Structure Determination

description: Related Article: Constantin G. Daniliuc, Patrick Liptau, Roland Fröhlich, Gerhard Erker|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fff1c
title: CCDC 2247222: Experimental Crystal Structure Determination

description: Related Article: Constantin G. Daniliuc, Sabine Venne-Dunker, Roland Fröhlich, Gerhard Erker|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fk1dg
title: CCDC 2250705: Experimental Crystal Structure Determination

description: Related Article: Constantin G. Daniliuc, Sabine Venne-Dunker, Roland Fröhlich, Gerhard Erker|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fk3pt
title: CCDC 2250776: Experimental Crystal Structure Determination

description: Related Article: Constantin G. Daniliuc, Dominik Vagedes, Roland Fröhlich, Gerhard Erker|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25345/c5ws8hw88
title: MassIVE MSV000091962 - Human dataset for proteomic analysis of non-muscle invasive and muscle invasive bladder cancer highlights distinct subgroups
title: Urothelial bladder cancer ranks among the top ten malignancies worldwide, with approximately 20% of cases presenting as muscle-invasive disease. We present the proteomic profiling of a bladder cancer cohort comprising 79 cases, including treatment-naive cases of non-muscle invasive (NMIBC, N=17) and muscle-invasive bladder cancer (MIBC, N=51), as well as neoadjuvant-treated MIBC (N=11). Proteins were extracted from formalin-fixed, paraffin-embedded samples and analyzed using data-independent acquisition (DIA), yielding an average over 6,000 quantified proteins per sample. Our study found an enriched ECM and immune response signature in MIBC compared to NMIBC, with concomitant depletion of proteins involved in lipid metabolism and cell-cell adhesion. NMIBC presented two proteomic subgroups that correlate with histological grade and feature signatures of either cell adhesion or lipid/DNA metabolism. Treatment-naive MIBC presents three proteomic subgroups with signatures of metabolism, immune functionality, and ECM. The ECM and immune subgroups are enriched for markers of dendritic cells, macrophages and YAP1 signaling with the immune subgroup having additional enrichment of markers for cytotoxic T cells. Mechanistically, infiltration of CD8+ PD1+ positive cytotoxic T cells correlated with PD-L1 expression of MIBC, as demonstrated by multiplex immunofluorescence analysis. We further highlight increased endogenous proteolysis in MIBC alongside upregulation of matrix metalloproteases (MMPs), including MMP-14 whose expression silencing reduced T24 cell invasiveness in vitro. Genomic panel sequencing underlines prevalent FGFR3 mutations in NMIBC and prevalent TP53 mutations in MIBC while a genomic underpinning of the MIBC clusters remains elusive. Further proteogenomic data analysis yielded protein-level evidence for over1,300 single amino acid variants (SAAVs). The proteomes of neoadjuvant-treated, residual MIBC were like treatment-naive MIBC. Tumor-stroma interaction of MIBC was further investigated by proteomic analysis of patient-derived xenografts (PDX) of MIBC. In conclusion, our study adds to the comprehensive understanding of the proteome biology of early and advanced bladder cancer.
DOI: 10.34740/kaggle/dsv/1183191
title: The IQ-OTH/NCCD lung cancer dataset
DOI: 10.6084/m9.figshare.22850117
title: CARS_Data_Met_Obs_FINAL.csv

description: These data are via the Nebraska CARS511 archived database that have the locations of all state and federal highway flooding events.
DOI: 10.6084/m9.figshare.22850117.v1
title: CARS_Data_Met_Obs_FINAL.csv

description: These data are via the Nebraska CARS511 archived database that have the locations of all state and federal highway flooding events.
DOI: 10.5281/zenodo.7194372
title: Exploring the utility of regulatory network-based machine learning for gene expression prediction in maize

description: Relevant Data and Code for <em>Exploring the utility of regulatory network-based machine learning for gene expression prediction in maize </em>by Taylor Ferebee and Edward Buckler. <strong>Input Data</strong> The inputs of the models are enclosed in <em>Input_data-2022-001.zip</em> <strong>Output Data</strong> The outputs of the models are enclosed in <em>Output_Results-2022-001.zip</em> <strong>Relevant Code </strong> The code for all analyses is enclosed in <em>Code_Archive.zip </em>
description: This work was supported by the AFRI Predoctoral Fellowships [award no. 2022-67011-36564] from the USDA National Institute of Food and Agriculture.
DOI: 10.5281/zenodo.7194371
title: Exploring the utility of regulatory network-based machine learning for gene expression prediction in maize

description: Relevant Data and Code for <em>Exploring the utility of regulatory network-based machine learning for gene expression prediction in maize </em>by Taylor Ferebee and Edward Buckler. <strong>Input Data</strong> The inputs of the models are enclosed in <em>Input_data-2022-001.zip</em> <strong>Output Data</strong> The outputs of the models are enclosed in <em>Output_Results-2022-001.zip</em> <strong>Relevant Code </strong> The code for all analyses is enclosed in <em>Code_Archive.zip </em>
description: This work was supported by the AFRI Predoctoral Fellowships [award no. 2022-67011-36564] from the USDA National Institute of Food and Agriculture.
DOI: 10.5517/ccdc.csd.cc2dz33m
title: CCDC 2233460: Experimental Crystal Structure Determination

description: Related Article: Andrey Komogortsev, Boris Lichitskii, Constantine Milyutin, Valeriya Melekhina|2023|Org.Biomol.Chem.|21|2720|doi:10.1039/D3OB00273J
description: Related Article: Andrey N. Komogortsev, Boris V. Lichitskii, Constantine V. Milyutin, Valeriya G. Melekhina|2023|Org.Biomol.Chem.|21|2720|doi:10.1039/D3OB00273J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ff2jh
title: CCDC 2246896: Experimental Crystal Structure Determination

description: Related Article: Constantin G. Daniliuc, Guido Bökenfeld, Roland Fröhlich, Gerhard Erker|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.9fnjke
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Haemerosia vassilininei A.Bang-Haas, 1912"
 ]
}

 The dataset includes 12 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092313-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8fb6dn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Andryala pinnatifida Aiton",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092314-240321170329656/datasets/export for details.
DOI: 10.15468/dl.9fa7c8
title: Occurrence Download

description: A dataset containing 801 species occurrences available in GBIF matching the query:
{
 "SpeciesKey" : [
 "is one of (Ampithoe valida S.I.Smith, 1873)"
 ]
}

 The dataset includes 801 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092315-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21427/pwek-ag82
title: Circular Economy EU Networks Inventory
DOI: 10.15468/dl.uj8j6x
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anemone apennina L.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092317-240321170329656/datasets/export for details.
DOI: 10.5281/zenodo.8337495
title: Falling shoulders ahead: adaptive alien genes maintained amidst vanishing introgression footprint in sea squirts

description: This zenodo archive contains the multi-locus genotype tables for the paper "Falling shoulders ahead: adaptive alien genes maintained amidst vanishing introgression footprint in sea squirts". There are three files in this archive: Ci_KASP_genotypes_2012.csv: genotype table for individuals sampled in 2012 Ci_KASP_genotypes_2021.csv: genotype table for individuals sampled in 2021 as well as control individuals from the two <em>Ciona</em> species Ci_KASP_genotypes_hybrids.csv: genotype table for control hybrids
DOI: 10.5281/zenodo.8337494
title: Adaptive alien genes are maintained amidst a vanishing introgression footprint in a sea squirt

description: This zenodo archive contains the multi-locus genotype tables for the paper "Falling shoulders ahead: adaptive alien genes maintained amidst vanishing introgression footprint in sea squirts". There are three files in this archive:



	
Ci_KASP_genotypes_2012.csv: genotype table for individuals sampled in 2012
	
Ci_KASP_genotypes_2021.csv: genotype table for individuals sampled in 2021 as well as control individuals from the two Ciona species
	
Ci_KASP_genotypes_hybrids.csv: genotype table for control hybrids
DOI: 10.5281/zenodo.8367591
title: Adaptive alien genes are maintained amidst a vanishing introgression footprint in a sea squirt

description: This zenodo archive contains the multi-locus genotype tables for the paper "Falling shoulders ahead: adaptive alien genes maintained amidst vanishing introgression footprint in sea squirts". There are three files in this archive:



	
Ci_KASP_genotypes_2012.csv: genotype table for individuals sampled in 2012
	
Ci_KASP_genotypes_2021.csv: genotype table for individuals sampled in 2021 as well as control individuals from the two Ciona species
	
Ci_KASP_genotypes_hybrids.csv: genotype table for control hybrids
DOI: 10.6084/m9.figshare.25534225
title: Affinare il contesto: estrazione di informazioni strutturate per l’arricchimento dei contesti archivistici. Risultati dell'analisi effettuata con Fred

description: Risultato dell'analisi effettuata tramite il tool Fred del primo paragrafo della nota biografica di Andrea Costa pubblicata da Archivi ER - Sistema informativo partecipato degli archivi storici in Emilia-Romagna e integrata nel sistema SAN LOD consultabile al link: http://dati.san.beniculturali.it/SAN/produttore_IT-ER-IBC_san.cat.sogP.66756L'analisi in oggetto è stata effettuata nell'ambito della stesura dell'articolo "Affinare il contesto: estrazione di informazioni strutturate per l’arricchimento dei contesti archivistici" proposto da Lucia Giagnolini, Paolo Bonora e Francesca Tomasi alla call for paper AIUCD 2024.
DOI: 10.15468/dl.3tyfgg
title: Occurrence Download

description: A dataset containing 1454 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Rumex dentatus L.)"
 ]
}

 The dataset includes 1454 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092318-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.83wz4m
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anemone blanda Schott & Kotschy",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092319-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y85ncf
title: Occurrence Download

description: A dataset containing 280 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-135.33987 -19.24874,-11.66013 -19.24874,-11.66013 30.24874,-135.33987 30.24874,-135.33987 -19.24874))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Diclidurus albus Wied-Neuwied, 1820"
 ]
}

 The dataset includes 280 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092320-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qrq4en
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anemone nemorosa L.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092321-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25119116.v2
title: Analisi Tint

description: Risultato dell'analisi effettuata tramite il tool Tint del primo paragrafo della nota biografica di Andrea Costa pubblicata da Archivi ER - Sistema informativo partecipato degli archivi storici in Emilia-Romagna e integrata nel sistema SAN LOD consultabile al link: http://dati.san.beniculturali.it/SAN/produttore_IT-ER-IBC_san.cat.sogP.66756
DOI: 10.15468/dl.5vnwxj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anemone pavoniana Boiss.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092322-240321170329656/datasets/export for details.
DOI: 10.15468/dl.ejkqr7
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Cedrela fissilis Vell."
 ]
}

 The dataset includes 59 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092323-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.9804350
title: Predicted climate shifts within terrestrial protected areas worldwide

description: The dataset provides metrics on the extent of novel and disappearing climate conditions within terrestrial protected areas worldwide. The data also includes protected area chracteristics such as area, median elevation, terrain ruggedness, the human footprint and irreplaceability. The coordinates x and y included in the spreadsheet are given in degree (latitude and longitude), while WGS84 was used as a coordinate reference system. The area is given in km², elevation and terrain ruggedness in m. Other characteristics do not hold any unit. For details see the corresponding research paper.
DOI: 10.15468/dl.2yvuxh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anethum graveolens L.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092325-240321170329656/datasets/export for details.
DOI: 10.15468/dl.7ux9p4
title: Occurrence Download

description: A dataset containing 697 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Cedrela montana Moritz ex Turcz."
 ]
}

 The dataset includes 697 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092326-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4s3nvb
title: Occurrence Download

description: A dataset containing 709157 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aquila chrysaetos (Linnaeus, 1758)"
 ]
}

 The dataset includes 709157 records from 778 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092301-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p3uvc3
title: Occurrence Download

description: A dataset containing 938 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ambystoma mexicanum (Shaw & Nodder, 1798)"
 ]
}

 The dataset includes 938 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092327-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/yh4fhz8n9w.1
title: CTCF-8

description: MeRIP-seq1
DOI: 10.15468/dl.89aep9
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aneura pinguis (L.) Dumort.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092328-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/r82r43s6pf.1
title: CTCF-9

description: MeRIP-seq2
DOI: 10.15468/dl.anp5kc
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Material sample",
 "TaxonKey is Amazona ochrocephala (Gmelin, 1788)"
 ]
}

 The dataset includes 52 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092329-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tfuaef
title: Occurrence Download

description: A dataset containing 143 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Angelica sylvestris L.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 143 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092330-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ycygv6
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Manis crassicaudata É.Geoffroy Saint-Hilaire, 1803"
 ]
}

 The dataset includes 20 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092331-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5wx223
title: Occurrence Download

description: A dataset containing 836 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phyllobates terribilis Myers, Daly & Malkin, 1978"
 ]
}

 The dataset includes 836 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092333-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.