cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2bnt1w
title: CCDC 2164948: Experimental Crystal Structure Determination

description: Related Article: Adrien Schlachter, Rebecca Scheel, Daniel Fortin, Carsten Strohmann, Michael Knorr, Pierre D. Harvey|2022|Inorg.Chem.|61|11306|doi:10.1021/acs.inorgchem.2c01427
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bnt4z
title: CCDC 2164951: Experimental Crystal Structure Determination

description: Related Article: Adrien Schlachter, Rebecca Scheel, Daniel Fortin, Carsten Strohmann, Michael Knorr, Pierre D. Harvey|2022|Inorg.Chem.|61|11306|doi:10.1021/acs.inorgchem.2c01427
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bt5q2
title: CCDC 2169154: Experimental Crystal Structure Determination

description: Related Article: Alexandra E. Lubaev, Manjula D. Rathnayake, Favour Eze, Liela Bayeh-Romero|2022|J.Am.Chem.Soc.|144|13294|doi:10.1021/jacs.2c04588
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c0kvt
title: CCDC 2175296: Experimental Crystal Structure Determination

description: Related Article: Diksha Parmar, Ankit Kumar Dhiman, Rohit Kumar, Akhilesh K. Sharma, Upendra Sharma|2022|J.Org.Chem.|87|9069|doi:10.1021/acs.joc.2c00752
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bw3n0
title: CCDC 2171012: Experimental Crystal Structure Determination

description: Related Article: Olaya Bernardo, Javier González, Javier Borge, Luis A. López|2022|Org.Lett.|24|5203|doi:10.1021/acs.orglett.2c02035
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.20296758.v2
title: Genome-wide identification of MAPK gene family in turbot and their involvement in biotic and abiotic stresses response

description: Mitogen-activated protein kinases (MAPKs), a series of mitogen-activated protein kinases lying within MAPK cascade, unique to eukaryotes, which plays key roles in transducing upstream signals to the target proteins and thus induce various cellular responses. In the present study, we firstly identified and characterized SmMAPKs at genome-wide level systematically, then performed phylogenetic analysis and gene structure analysis. Finally, we investigated their expression patterns in diverse tissues and divergent functions on biotic and abiotic stresses response based on multiple RNA-seq datasets. Table_1 provides the detail information of RNA-seq datasets used for tissue expression analysis of MAPKs. Table_2 provides the detail information of RNA-seq datasets used for MAPKs expression analysis under biotic and abiotic stresses. Table_3 is the expression data of MAPKs in different tissues. Table_4 is the expression data of MAPKs under heat stress. Table_5 is the expression data of MAPKs under oxygen stress. Table_6 is the expression data of MAPKs under salinity stress. Table_7 is the expression data of MAPKs under pathogens (<em>Enteromyxum scophthalmi, Vibrio anguillarum, Megalocytiviru</em>) stress.
DOI: 10.6084/m9.figshare.20388267
title: The pH tipping point of bacterial- or fungal-dominated soil multifunctionality

description: We found that bacterial biomass/diversity and fungal biomass/diversity dominated soil multifunctionality in systems with soil pH below and above 6, respectively. Furthermore, with continued soil acidification, we predict a global increase of approximately 16% in bacteria-dominated areas of soil multifunctionality by 2070.
DOI: 10.6084/m9.figshare.20388267.v1
title: The pH tipping point of bacterial- or fungal-dominated soil multifunctionality

description: We found that bacterial biomass/diversity and fungal biomass/diversity dominated soil multifunctionality in systems with soil pH below and above 6, respectively. Furthermore, with continued soil acidification, we predict a global increase of approximately 16% in bacteria-dominated areas of soil multifunctionality by 2070.
DOI: 10.34740/kaggle/dsv/3994800
title: Russian Invasion of Ukraine
DOI: 10.6084/m9.figshare.20388433
title: Additional file 3 of Characterizing Hox genes in mayflies (Ephemeroptera), with Hexagenia limbata as a new mayfly model

description: Additional file 3. Contains all identified mayfly Hox protein sequences in FASTA format.
DOI: 10.6084/m9.figshare.20388433.v1
title: Additional file 3 of Characterizing Hox genes in mayflies (Ephemeroptera), with Hexagenia limbata as a new mayfly model

description: Additional file 3. Contains all identified mayfly Hox protein sequences in FASTA format.
DOI: 10.6084/m9.figshare.20388375
title: Dominant fungal communities aggregate in the shallow rhizosphere soil of Anabasis aphylla

description: Plant root systems actively select microbial communities that can promote plant growth and health.
DOI: 10.6084/m9.figshare.20388375.v1
title: Dominant fungal communities aggregate in the shallow rhizosphere soil of Anabasis aphylla

description: Plant root systems actively select microbial communities that can promote plant growth and health.
DOI: 10.5519/qd.kbk72ikk
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.20388357.v1
title: obi_miRNA.rar

description: The data were generated from RNA-seq of three females and three males gonads in <em>Opsariichthys bidens</em>. The data consists of six parts, namely, clean reads statistics, miRNA annotation, novel miRNA, miRNA expression, differentially expressed miRNA and GO&KEGG analysis.
DOI: 10.5281/zenodo.6844488
title: A longitudinal MRI dataset of young adult C57BL6J mouse brain

description: This dataset contains 101 labeled young adult C57BL6J mouse brain MRI scans acquired with a 11.7T MR scanner. As part of the source domain data of Brain Extraction Net (BEN), specific analysis and usage are provided at github and in the manuscript. Since T2WI is the most commonly used modality for rodent brain imaging and we have accumulated extensive brain scans with high-quality annotations in our previous research studies, we first trained the model on the Mouse-T2WI-11.7T dataset, which served as the source-domain dataset, following the conventional fully supervised training strategy. In particular, we focus on the following features: <strong>Transferability and flexibility</strong>: BEN can adapt to different species, modalities and platforms through its adaptive batch normalization module and semi-supervised learning module. <strong>Automatic quality assessment</strong>: Unlike traditional toolboxes, which rely on manual inspection to assess the brain extraction quality, BEN incorporates a quality assessment module to automatically evaluate its brain extraction performance. <strong>Speed</strong>: As a DL-based method, BEN can process an MRI volume faster (&lt;1 second) than traditional toolboxes (several minutes or longer).
DOI: 10.25910/1y6y-xc65
title: Data and R script for Manuscript by Parker et al. (2022). Manuscript title: Weaponising wildlife: training free-living native predators towards more effective predation of novel alien prey

description: Excel document and R script containing all data and code relevant to manuscript by Parker et al. (2022). Manuscript title: Weaponising wildlife: training free-living native predators towards more effective predation of novel alien prey.
DOI: 10.6084/m9.figshare.20388357.v2
title: obi_miRNA.rar

description: The data were generated from RNA-seq of three females and three males gonads in <em>Opsariichthys bidens</em>. The data consists of six parts, namely, clean reads statistics, miRNA annotation, novel miRNA, miRNA expression, differentially expressed miRNA and GO&KEGG analysis.
DOI: 10.25919/7rca-af59
title: Soil and Landscape Grid National Soil Attribute Maps - Clay (3" resolution) - Release 2

description: This is Version 2 of the Australian Soil Clay Content product of the Soil and Landscape Grid of Australia. It supersedes the Release 1 product that can be found at https://doi.org/10.4225/08/546EEE35164BF The map gives a modelled estimate of the spatial distribution of clay in soils across Australia. The Soil and Landscape Grid of Australia has produced a range of digital soil attribute products. Each product contains six digital soil attribute maps, and their upper and lower confidence limits, representing the soil attribute at six depths: 0-5cm, 5-15cm, 15-30cm, 30-60cm, 60-100cm and 100-200cm. These depths are consistent with the specifications of the GlobalSoilMap.net project (http://www.globalsoilmap.net/). The digital soil attribute maps are in raster format at a resolution of 3 arc sec (~90 x 90 m pixels). Detailed information about the Soil and Landscape Grid of Australia can be found at - https://www.clw.csiro.au/aclep/soilandlandscapegrid/index.html Attribute Definition: 2 μm mass fraction of the less than 2 mm soil material determined using the pipette method; Units: %; Period (temporal coverage; approximately): 1950-2021; Spatial resolution: 3 arc seconds (approx 90m); Total number of gridded maps for this attribute: 18; Number of pixels with coverage per layer: 2007M (49200 * 40800); Data license : Creative Commons Attribution 4.0 (CC BY); Target data standard: GlobalSoilMap specifications; Format: Cloud Optimised GeoTIFF;
DOI: 10.25919/3yj4-rx31
title: Evaluating the prevalence of spurious correlations in simulated pulsar timing array datasets

description: This dataset contains simulated pulsar timing array data based on the Parkes Pulsar Timing Array second data release. The dataset is described in detail in Zic et al. (2022) – its main purpose is to test the behaviour of gravitational wave inference pipelines for the presence of a common-spectrum noise process under datasets with increasingly disparate timing noise properties across pulsars.
DOI: 10.6084/m9.figshare.20388261
title: M. rosenbergii miRNA.zip

description: The main body of this database is the RNA sequencing (RNA-seq) on brain and gonad organs in male and female <em>M. Rosenbergii</em>. This data contains four miRNA libraries. The main contents include miRNA sequence, length, known and novel miRNAs, GO and KEGG enrichment analysis.
DOI: 10.6084/m9.figshare.20388261.v2
title: M. rosenbergii miRNA.zip

description: The main body of this database is the RNA sequencing (RNA-seq) on brain and gonad organs in male and female <em>M. Rosenbergii</em>. This data contains four miRNA libraries. The main contents include miRNA sequence, length, known and novel miRNAs, GO and KEGG enrichment analysis.
DOI: 10.6084/m9.figshare.20388261.v1
title: M. rosenbergii miRNA.zip

description: The main body of this database is the RNA sequencing (RNA-seq) on brain and gonad organs in male and female <em>M. Rosenbergii</em>. This data contains four miRNA libraries. The main contents include miRNA sequence, length, known and novel miRNAs, GO and KEGG enrichment analysis.
DOI: 10.6084/m9.figshare.20383611
title: dataset.xlsx

description: Human serum samples were collected from patients with history of three or more recurrent spontaneous abortion and non- pregnant women with two or more successful deliveries. Chlamydia trachomatis infection was detected in the samples collected from the patients and real time PCR was perform to study the expression of microRNA genes in these patients. qPCR gene expression profiling of microRNAs 101-3p, 133a, 146b-5p, 320b, 24, 559 genes in serum samples. RT- PCR assay was performed on total RNA isolated from serum. Total RNA was reverse transcribed to cDNA using miR script II reverse transcriptase kit (Qiagen).
DOI: 10.6084/m9.figshare.20383611.v2
title: dataset.xlsx

description: Human serum samples were collected from patients with history of three or more recurrent spontaneous abortion and non- pregnant women with two or more successful deliveries. Chlamydia trachomatis infection was detected in the samples collected from the patients and real time PCR was perform to study the expression of microRNA genes in these patients. qPCR gene expression profiling of microRNAs 101-3p, 133a, 146b-5p, 320b, 24, 559 genes in serum samples. RT- PCR assay was performed on total RNA isolated from serum. Total RNA was reverse transcribed to cDNA using miR script II reverse transcriptase kit (Qiagen).
DOI: 10.6084/m9.figshare.20383611.v1
title: dataset.xlsx

description: Human serum samples were collected from patients with history of three or more recurrent spontaneous abortion and non- pregnant women with two or more successful deliveries. Chlamydia trachomatis infection was detected in the samples collected from the patients and real time PCR was perform to study the expression of microRNA genes in these patients. qPCR gene expression profiling of microRNAs 101-3p, 133a, 146b-5p, 320b, 24, 559 genes in serum samples. RT- PCR assay was performed on total RNA isolated from serum. Total RNA was reverse transcribed to cDNA using miR script II reverse transcriptase kit (Qiagen).
DOI: 10.5281/zenodo.6918111
title: Transmission and Distribution Substation Energy Management Considering Large-Scale Energy Storage, Demand Side Management and Security-Constrained Unit Commitment

description: Data used in "Transmission and Distribution Substation Energy Management Considering Large-Scale Energy Storage, Demand Side Management and Security-Constrained Unit Commitment".
DOI: 10.5281/zenodo.6918110
title: Transmission and Distribution Substation Energy Management Considering Large-Scale Energy Storage, Demand Side Management and Security-Constrained Unit Commitment

description: Data used in "Transmission and Distribution Substation Energy Management Considering Large-Scale Energy Storage, Demand Side Management and Security-Constrained Unit Commitment".
DOI: 10.25442/hku.18623522.v4
title: The Belt and Road Initiative on Twitter: An Annotated Dataset

description: This repository stores a collection of 500,711 posts (tweets) and 714,794 reposting threads (retweets) related to the BRI on Twitter. The dataset was collected through Twitter APIs using the terms: “belt and road”, “one belt one road”, ‘new silk road”, “maritime silk road”, and “silk road economic belt”, which includ the phrases and their hashtag format to download data. The time series of the dataset is from 7 September 2013 to 30 November 2021. Furthermore, the dataset has been annotated in terms of languages, sentiment, and geopolitical entities by using text analytics in language detection, neural machine translation, lexicon-based sentiment analysis, and web automation. To facilitate insights discovery, we classified the dataset into four databases in which can be analyzed separately and used by researchers related to various fields, such as social science, network science, sociology, and others to study the dynamic activities on Twitter, trends on keywords, users’ characteristics, as well as the social networks on citing patterns. <br> All programming scripts required to reproduce the dataset are available at: https://github.com/edmangog/The-BRI-on-Twitter
DOI: 10.5519/qd.1aydv10i
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5179720 records)
DOI: 10.15468/58dtfx
title: Global Register of Introduced and Invasive Species - Protected areas, Tonga

description: The Global Register of Introduced and Invasive Species (GRIIS) presents validated and verified national checklists of introduced (alien) and invasive alien species at the country, territory, and associated island level. Checklists are living entities, especially for biological invasions given the growing nature of the problem. GRIIS checklists are based on a published methodology and supported by the Integrated Publishing Tool that jointly enable ongoing improvements and updates to expand their taxonomic coverage and completeness. All kingdoms of organisms occurring in all environments and systems are covered. Checklists are reviewed and verified by networks of country or species experts. Verified checklists/ species records, as well as those under review, are presented on the online GRIIS website (www.griis.org) in addition to being published through the GBIF Integrated Publishing Tool.
DOI: 10.6084/m9.figshare.20123813
title: Supplementary Material for: The open field test as a tool for behaviour analysis in pigs – recommendations for set-up standardisation. A systematic review.

description: Introduction: The open field (OFT) test is a common tool to assess anxiety and behavioural changes in rodents. It has been adapted to pigs with no systematic investigation of how environmental changes may alter the performance of pigs. Currently, the number of published studies including the OFT in domestic pig models is increasing without standardisation Methods: Our review aimed to investigate the open field (OF) set-ups in published studies and the similarities between performance and published parameters. Results: Following the PRISMA guidelines for reviews, we selected 69 studies for inclusion in this systematic review. We determined the specific set-up conditions such as dimensions, duration and time of day for most of the included studies; we found high variability across studies with respect to these test specifics. Discussion: Our results indicate the inconsistent implementation of OF the set-up, including dimensions, timing, parameters, and additional combined tests (e.g. new object tests). Based on our findings, we have made recommendations for the performance of the OFT, according to the current literature.
DOI: 10.6084/m9.figshare.20123813.v1
title: Supplementary Material for: The open field test as a tool for behaviour analysis in pigs – recommendations for set-up standardisation. A systematic review.

description: Introduction: The open field (OFT) test is a common tool to assess anxiety and behavioural changes in rodents. It has been adapted to pigs with no systematic investigation of how environmental changes may alter the performance of pigs. Currently, the number of published studies including the OFT in domestic pig models is increasing without standardisation Methods: Our review aimed to investigate the open field (OF) set-ups in published studies and the similarities between performance and published parameters. Results: Following the PRISMA guidelines for reviews, we selected 69 studies for inclusion in this systematic review. We determined the specific set-up conditions such as dimensions, duration and time of day for most of the included studies; we found high variability across studies with respect to these test specifics. Discussion: Our results indicate the inconsistent implementation of OF the set-up, including dimensions, timing, parameters, and additional combined tests (e.g. new object tests). Based on our findings, we have made recommendations for the performance of the OFT, according to the current literature.
DOI: 10.34740/kaggle/dsv/3995147
title: WallStreetBets 2022
DOI: 10.6084/m9.figshare.19612971.v1
title: Dances with wolves: Exploring the limits to turning performance with size and shape variation in dogs

description: <br> Supplementary data for: <br> Dances with wolves: Exploring the limits to turning performance with size and shape variation in dogs Tina Haagensen1,2, Johanna T. Schultz1,3, Joshua Gaschk1, Christofer J. Clemente1 <br> 1. School of Science and Engineering, University of the Sunshine Coast, QLD, Australia <br> 2. Kristiansand Dyrepark, 4609 Kardemomme by, Norway <br> 3. The Robotics and Autonomous Systems Group, CSIRO Data61, QLD, Australia <br>
DOI: 10.6084/m9.figshare.20390040.v1
title: Supplementary Material for: Clinical Characteristics and Treatment Outcome of Central Nervous System Nocardiosis: A Systematic Review of Reported Cases

description: <b><i>Background:</i></b> The clinical spectrum of systemic nocardiosis encompasses pulmonary and disseminated disease. Central nervous system (CNS) involvement is an important feature of disseminated disease with significant mortality and high relapse rate, especially in those with suppressed cell-mediated immunity. This systematic review aimed to evaluate the epidemiology, clinical features, diagnosis, therapeutic interventions, and outcome in patients with CNS nocardiosis. <b><i>Methods:</i></b> A literature search was performed in major databases (PubMed, Google Scholar, and Scopus) by using distinct keywords: “CNS disease,” “<i>Nocardia</i>,” “meningitis,” “brain abscess,” “disseminated disease,” and “Cotrimoxazole.” We included all patients ≥18 years with CNS nocardiosis reported between January 2000 and December 2020. <b><i>Results:</i></b> A total of 129 papers were included in the final analysis. The mean age of patients was 55 ± 16 years, and the majority were male (70.8%). <i>Nocardia farcinica</i> was the commonest species (39.6%), followed by <i>Nocardia nova</i> (5.9%). Thirty-four percent of the patients were found to be immunocompetent. Corticosteroid use was the most common predisposing factor (55.8%). Among neuroimaging findings, brain abscess was most common (86.9%), followed by leptomeningeal enhancement (12.1%). The overall case-fatality rate in CNS disease was 22.8%. On multivariate analysis, patients who underwent surgery (OR 2.4, 95% CI 0.99–4.11, <i>p</i> value 0.046) had better survival than those treated with antimicrobial therapy alone. Immunodeficient state (OR 0.32, 95% CI 0.15–0.90, <i>p</i> value 0.019) was independently associated with poor outcome. <b><i>Conclusion:</i></b> CNS nocardiosis carries significant mortality, especially in immunodeficient patients. We advocate the use of surgery combined with antimicrobials to improve clinical outcome.