cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6182075.v2
title: Five example modalities

description: Five related modalities with different qualities
DOI: 10.6084/m9.figshare.832457.v2
title: Mock Metagenomic Illumina Datafiles

description: 40 M paired end reads were constructed from 25 reference microbial genomes (including associated plasmids). The reads were either left as paired ends or merged to form longer, continuous reads. The full datasets (either paired or merged) were digitally normalized. They are provided for the purpose of benchmarking assemblers, testing annotation procedures, etc. See table for details on full dataset.
DOI: 10.6084/m9.figshare.21802656.v1
title: data3.xlsx

description: We collected data from mobile payment service users in Taiwan.
DOI: 10.6084/m9.figshare.27301689.v2
title: Tables and supplementary Tables for "The partitioning of chalcophile and siderophile elements (CSEs) between sulfide liquid and carbonated melt"

description: Tables and supplementary Tables for "The partitioning of chalcophile and siderophile elements (CSEs) between sulfide liquid and carbonated melt"
DOI: 10.25442/hku.25299145.v1
title: Supporting Dataset for "Multi-vehicle static bike repositioning problems"

description: This dataset contains the test instances for three bike repositioning problems: 1) a static green bike repositioning problem with heavy and light vehicles, 2) a static bike repositioning problem with e-bike and conventional bikes, and 3) a static e-bike repositioning problem with charging and non-charging docks. The test instances were used to conduct numerical experiments. The dataset contains bike-sharing network information, either artificial or real-world, including travel distance/time matrices, inventory level(s) at the stations, surplus/deficit at the stations, penalty values at each station with respect to the inventory level(s), parameters used to linearize the penalty function, etc. Each folder may not contain all the information above, subject to the specific problem.Dataset in folder "SDTBRP" was adapted from "Dataset 1" and "Dataset 3" in the study of Ho and Szeto (2017), "A hybrid large neighborhood search for the static multi-vehicle bike-repositioning problem". Dataset in folder "SEBRP-CN" was adapted from "Dataset 3" in the same study.
DOI: 10.6084/m9.figshare.5125669.v1
title: Supplementary Material for: MRI Follow-Up after 24 h Is an Accurate Surrogate Parameter for Treatment Success after Thrombolysis

description: Medicine
DOI: 10.6084/m9.figshare.3529298.v1
title: Appendix C. Additional details for the analysis of marine mammal data.

description: Additional details for the analysis of marine mammal data.
DOI: 10.6084/m9.figshare.24305032.v1
title: Data_file_14_Predicted gene

description: Genome assembly of Erythrophleum fordii.
DOI: 10.6084/m9.figshare.28741994.v1
title: Data from: Light-dark differences in spatial and temporal variability of phosphorus and ammonium uptake by river biofilms

description: This repository contains the following files:
DOI: 10.6084/m9.figshare.16726567.v1
title: SusPigSys51farms_Animals2021.xlsx

description: Dataset used for perfoming an observational study to investigate housing risk factors for the welfare of finishing pigs under commercial conditions, by using 32 animal welfare indicators, across fattening units of 51 pig farms in seven EU countries.
DOI: 10.6084/m9.figshare.22233067.v1
title: Data from: Density of predating Asian hornets at hives disturbs the 3D flight performance of honey bees and decreases predation success

description: This dataset result from field monitoring using an automated 3D image-based tracking system to study the behavioural interactions between the Western honey bee <em>Apis melifera</em> and its invasive predator the Asian hornet, <em>Vespa velutina nigrithorax,</em> in western France. We recorded a total of 603,259 flight trajectories and 5,175 predator-prey flight interactions leading to 126 successful predation events, representing 2.4% predation success. The data are related to the scientific paper "Poidatz, J., Chiron, G., Kennedy, P., Osborne, J., Requier, F. (2023) Density of predating Asian hornets at hives disturbs the 3D flight performance of honey bees and decreases predation success. Ecology and Evolution". <br> Two datasets are available: (1) the csv file title "data.trajectory.csv" that includes all the trajectories reccorded. This file includes 603,259 ligns and 10 columns: #ID_traj = trajectory identity number #Date = Date of the trajectory reccord #Hour = time of the start of the trajectory (hour : min : sec) #Type_traj = Type of the trajectory (0 for a honey bee and 1 for a Asian hornet) #Nat_traj = Nature of the trajectory (0 for an undefined trajectory passing trough the camera; 1 for a trajectory leaving the hive; 2 for a trajectory entering the hive) #Max_speed = Maximum speed observed throughout the trajectory in m/sec #Dist_Tot = Total distance traveled (odometry) in meters #Dist_Crow = Distance traveled as the crow flies (naive distance between the point of departure and the point of arrival) in meters #Curvature = Curvature of the trajectory based on the calculation Dist_Tot/Dist_Crow #Hov_perc = Hovering percentage as the % of static time over the duration of the trajectory (2) the csv file title "data.predation.success.csv" that includes the trajectories resulting in a predation success. This file includes 131 ligns and 4 columns: #ID_traj = trajectory identity number #Date = Date of the trajectory reccord #Hour_catch = time of the catch event begening (hour : min : sec) #Bee_IN_vs_OUT = orientation of the honey bee whose trajectory is looked at : IN for entering the hive, OUT for exiting the hive, NA for neither entering nor exiting the hive. <br> <br> <br>
DOI: 10.6084/m9.figshare.7941056.v1
title: gVCF_NA20588

description: 1000 Genomes gVCF mapped to hs37d5 for NA20588. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.14248055.v2
title: SARS-CoV-2 and the Role of Airborne Transmission: Systematic review

description: The data is for F1000 review. <b>SARS-CoV-2 and the Role of </b><b>Airborne Transmission: Systematic review </b>Heneghan C; Spencer EA; Brassey J Plüddemann A ; Onakpoya, Evans D<sup>; </sup>Conly JM; Jefferson T.<br>The data incudes updated protocol, search strategies, characteristics of included primary studies and systematic reviews, reporting quality, main results and references to included studies for systematic review examining the role of fomites in SARS-CoV-2 transmission. A PRISMA Checklist is also included.<b> </b>
DOI: 10.6084/m9.figshare.26398510.v1
title: RPM_castrate_OT_measurements.csv

description: RPM Ascl1 WT orthotopic tumors in castrated hosts.
DOI: 10.6084/m9.figshare.13143236.v1
title: Data Repository: CHRONIC USE OF A SENSITIZED BIONIC HAND DOES NOT REMAP THE SENSE OF TOUCH

description: Data and code for paper:<br>CHRONIC USE OF A SENSITIZED BIONIC HAND DOES NOT REMAP THE SENSE OF TOUCH<br>Cell Reports 2020
DOI: 10.6084/m9.figshare.22492867.v1
title: Tree height, leaf thickness and seed size drive tree sensitivity to climate change in the brazilian seasonally dry tropical vegetation

description: distrib.zip have maps of species distribution in present and future, while data have traits, area of distribution and variation for each specie
DOI: 10.6084/m9.figshare.16441785.v1
title: Supplementary file 1 Table S1 S2 S3.xlsx

description: putative efflux pump gene expression level change in tuberculosis
DOI: 10.6084/m9.figshare.8868587.v1
title: Phylogenomics of NCLDV

description: 25 files, including single gene alignments raw and filtered, concatenated gene alignments raw and filtered, and phylogenomic tree files <br> Single-gene alignments (untrimmed) for phylogenomic analysisDataset by Elisabeth Hehenberger<br>Single-gene alignments for 10 proteins in fasta format. Alignments were manually curated (removal of highly divergent and/or paralogous sequences, merging of sequence fragments) based on single-gene phylogenies. Merged sequences are indicated in the sequence name. Final alignments were performed with the MAFFT L-INS-i algorithm.<br>File name convention:OG numbers stand for the orthogroups recovered in this studyNCVOG numbers stand for the orthogroups recovered in:<br>N. Yutin, Y. I. Wolf, D. Raoult, E. V Koonin, Eukaryotic large nucleo-cytoplasmic DNA viruses: Clusters of orthologous genes and reconstruction of viral genome evolution. Virol J. 6, 223 (2009).<br>Sequence name convention:Virus name; GenBank accession(except for the ChoanoV sequences)<br><br>Single-gene alignments (trimmed) for phylogenomic analysisDatasetmodified on 21.07.2018, 15:20 by Elisabeth HehenbergerTrimmed single-gene alignments for 10 proteins as used for concatenation in fasta format. Trimming was performed with BMGE using the default gap threshold and the BLOSUM30 similarity matrix.<br>File name convention:OG numbers stand for the orthogroups recovered in this studyNCVOG numbers stand for the orthogroups recovered in:<br>N. Yutin, Y. I. Wolf, D. Raoult, E. V Koonin, Eukaryotic large nucleo-cytoplasmic DNA viruses: Clusters of orthologous genes and reconstruction of viral genome evolution. Virol J. 6, 223 (2009).<br>Sequence name convention:Virus name; GenBank accession(except for the ChoanoV seqeunces)<br>Concatenated alignments for phylogenomic analysisDatasetmodified on 21.07.2018, 16:50 by Elisabeth HehenbergerConcatenated alignments underlying phylogenomic trees.A README file contains details concerning the individual files.<br><br> Phylogenomic trees in newick formatDataset by Elisabeth Hehenberger<br>Phylogenomic reconstructions in newick format. All phylogenomic trees described in the publication can be found in newick format in this file, including a detailed description for each tree.<br>
DOI: 10.17028/rd.lboro.6969707.v1
title: 50uL FDM removable insert

description: Removable insert for 50uL mould to be 3D printed via fused deposition modelling (FDM).
DOI: 10.6084/m9.figshare.12598553.v1
title: Data for "Thickness Variations and Absence of Lateral Compositional Fluctuations in Aberration-Corrected STEM Images of InGaN LED Active Regions at Low Dose"

description: Data for Yankovich, A. B., Kvit, A. V., Li, X., Zhang, F., Avrutin, V., Liu, H., Izyumskaya, N., Özgür, U., Van Leer, B., Morkoç, H. & Voyles, P. M. Thickness Variations and Absence of Lateral Compositional Fluctuations in Aberration-Corrected STEM Images of InGaN LED Active Regions at Low Dose. Microsc. Microanal. 20, 864–8 (2014). DOI: 10.1017/S1431927614000427
DOI: 10.6084/m9.figshare.22807172.v1
title: Broken symmetries and excitation spectra of interacting electrons in partially filled Landau levels

description: source data for figure 2: - all the experimental plots are in the .gbs file. The theory plots for figure 2 are saved in the .csv. All the .sxm files are source data for figure 4 d and e. The codes required to run the analysis are provided in the .zip file.
DOI: 10.6084/m9.figshare.27266334.v1
title: perm.test.R.zip

description: <b>Integrative genomics refines tissues, candidate genes and putative regulatory links involved in the humic adaptation of keystone freshwater fish</b>Ozerov M.Yu.<sup>1,*</sup>, Noreikiene K.<sup>2,3</sup>, Taube K.<sup>2</sup>, Gross R.<sup>2</sup>, Vasemägi A.<sup>2,4,*</sup><b>R script. </b>A custom R script and accompanying dataset to perform a permutation test to determine if DEGs and nearby regions are enriched for outlier SNPs potentially shaped by natural selection driven by humic substances.<br>
DOI: 10.6084/m9.figshare.20416083.v1
title: Data from: Evolution of sexual size dimorphism in tetrapods is driven by varying patterns of sex-biased selection on size

description: Output from BayesTraits runs as described in the Methods section of "Evolution of sexual size dimorphism in tetrapods is driven by varying patterns of sex-biased selection on size".
<br>
Contains four folders, one for each tetrapod class. In each folder are the input files for the BayesTraits analyses (phylogeny in nexus format, two extant body size data in txt format suffixed _f for females and _m for males, and config file in txt format), and the output files from six independent runs for each sex (suffixed _f for females and _m for males). Additionally, there are two output files from combined post-processed runs: out_f.csv and out_m.csv.
<br>
This folder should be copied into the R project folder (10.6084/m9.figshare.20416245), and R code provided there there can be run to perform analyses.
DOI: 10.17632/t7n3ghty5w.1
title: STD DTI-CV

description: Data from 50 surveys to local government tourism officers of the network of intelligent tourist destinations of the Comunitat Valenciana (Spain).U
DOI: 10.6084/m9.figshare.27874164.v1
title: Air-dried soils for microbial biogeography

description: The potential of archived air-dried soil samples to enhance our understanding of long-term microbial community dynamics remains largely untapped due to concerns about their reliability for molecular analyses. While previous studies have investigated air-drying effects on soil microbial analysis, few have examined these effects across diverse environmental gradients, limiting our understanding of archived soil samples in microbial biogeography at large spatial scales. Through a comprehensive regional survey of 244 arable sites in eastern China, we evaluated the impact of air-drying on microbial biogeographical analysis. Our results demonstrate that while air-drying significantly altered community composition and diversity metrics, it preserved broad ecological patterns and environmental relationships. Air-dried samples maintained similar community dissimilarity patterns and environmental drivers as fresh samples, despite showing reduced diversity and shifted taxonomic compositions. Co-occurrence network analysis revealed altered correlation patterns, likely due to differential responses to desiccation stress. These findings establish a framework for leveraging air-dried samples in microbial ecology, particularly for large-scale studies focused on microbial biogeography and environmental relationships, while providing practical guidelines for results interpretation.
DOI: 10.6084/m9.figshare.12300797.v4
title: A predictive model for Chinese children with developmental dyslexia——Based on genetic algorithm optimized back-propagation neural network

description: Dataset, program, and model
DOI: 10.25381/cput.21989078.v1
title: ANAEROBIC TREATMENT OF TANNERY EFFLUENTS FOR RESOURCE RECOVERY IN A CIRCULAR BIOECONOMY

description: The datasets presented are for a number of inter-related studies that focussed on the optimisation of the anaerobic treatment of ostrich and bovine tannery wastewater for resource recovery to promote a circular bioeconomy and net positive tannery operations. The studies: https://doi.org/10.1016/j.jclepro.2023.135872; https://doi.org/10.1016/j.psep.2021.12.027; and https://doi.org/10.3390/en14092491 investigated the characteristics of different tannery effluent streams, their anaerobic mono/co-digestion, process kinetics, treatment in a biological integrated system (IBS) and suitability of the recovered resources for recycling and/or reuse. <br> The full-scale application of the IBS at a local medium-sized tannery treating 2258 m<sup>3</sup>/day of bovine tannery wastewater demonstrated the feasibility of producing a floating sulfur biofilm with 33% elementary sulfur (S<sup>0</sup>), 3420 m<sup>3 </sup>of CH<sub>4</sub>, and 31 tonnes of biofertiliser. The sale of recovered resources and potential savings from 72% reduction in electricity demand and 62% in sludge disposal had a potential revenue of US$5559. The integrated system has a payback period of about 5 years and an internal rate of return of about 18%.
DOI: 10.6084/m9.figshare.24910803.v2
title: Experiment 1: Results of numerical experiments for the small network from Fig. 2

description: The 'Ex_1.csv' file contains the results of the numerical experiments described in Section 4.1. Experiment 1.Notation occurring in the 'Ex_1.csv' file:d - the system demand requirement;#d-MPs - the number of all d-MPs;rel_J, rel_A, rel_B, rel_L, rel_Lp, rel_K1, rel_K2 - the two terminal reliability (or reliability bounds) returned by algorithms: DOI: 10.1109/TR.2008.920792, DOI: 10.1109/TR.1985.5222235, DOI: 10.1109/TR.2020.2988987, the serial bounding algorithm described in article DOI: 10.1016/j.ress.2021.107500, the series-parallel bounding algorithm described in article DOI: 10.1016/j.ress.2021.107500 and the presented algorithm with parameter p=1,2, respectively;tim_J, tim_A, tim_B, tim_L, tim_Lp, tim_K1, tim_K2 - the running times of algorithms: DOI: 10.1109/TR.2008.920792, DOI: 10.1109/TR.1985.5222235, DOI: 10.1109/TR.2020.2988987, the serial bounding algorithm described in article DOI: 10.1016/j.ress.2021.107500, the series-parallel bounding algorithm described in article DOI: 10.1016/j.ress.2021.107500 and the 'Kozyra_part_SSD' procedure with parameter p=1,2, respectivelytim_Kd - the running time of the 'Kozyra_d_MPs_Part' proceduren_LU - the length of the list L_L_U (the number of limiting state points of subspaces without d-MPs).<br><br>
DOI: 10.6084/m9.figshare.27109480.v1
title: Supplementary Material for: Novel method to monitor arteriovenous fistula maturation: impact on catheter residence time.

description: Introduction
Arterio-venous fistula (AVF) maturation assessment is essential to reduce venous catheter residence. We introduced central venous oxygen saturation (ScvO2) and estimated upper-body blood flow (eUBBF) to monitor newly created fistula maturation and recorded catheter time in patients with and without ScvO2-based fistula maturation.
Methods
From 2017 to 2019 we conducted a multicenter quality improvement project (QIP) in hemodialysis patients with the explicit goal to shorten catheter residence time post-AVF creation through ScvO2-based maturation monitoring. In patients with a catheter as vascular access, we tracked ScvO2 and eUBBF pre- and post-AVF creation. The primary outcome was catheter residence time post-AVF creation. We compared catheter residence time post-AVF creation between QIP patients and controls. One control group comprised concurrent patients, a second control group comprised historic controls (2014-2016). We conducted Kaplan Meier analysis and constructed a Cox proportional hazards model with variables adjustment to assess time-to-catheter removal. 
Results
The QIP group comprised 44 patients (59±17 years), the concurrent control group 48 patients (59±16 years), the historic control group 57 patients (58±15 years). Six months post-AVF creation, the fraction of non-censored patients with catheter in place was 21% in the QIP cohort, 67% in the concurrent control group, and 68% in the historic control group. In unadjusted and adjusted analysis, catheter residence time post-fistula creation was shorter in QIP patients compared to either control groups (P&lt;0.001). 
Conclusion
ScvO2-based assessment of fistula maturation is associated with shorter catheter residence post-AVF creation.
DOI: 10.6084/m9.figshare.23544813.v1
title: Supplementary Material for: Using Clinical Scales and Digital Measures to Explore Falls in Patients with Lewy Body Dementia

description: <b><i>Introduction:</i></b> PRESENCE was a phase 2 clinical trial assessing the efficacy of mevidalen, a D1 receptor positive allosteric modulator, for symptomatic treatment of Lewy body dementia (LBD). Mevidalen demonstrated improvements in motor and non-motor features of LBD, global functioning, and actigraphy-measured activity and daytime sleep. Adverse events (AEs) of fall were numerically increased in mevidalen-treated participants. <b><i>Methods:</i></b> A subset of PRESENCE participants wore a wrist actigraphy device for 2-week periods pre-, during, and posttreatment. Actigraphy sleep and activity measures were derived per period and analyzed to assess for their association with participants’ reports of an AE of fall. Prespecified baseline and treatment-emergent clinical characteristics were also included in the retrospective analysis of falls. Independent-samples <i>t</i> test and χ<sup>2</sup> test were performed to compare the means and proportions between individuals with/without falls. <b><i>Results:</i></b> A trend toward more falls was observed with mevidalen treatment (31/258 mevidalen-treated vs. 4/86 in placebo-treated participants: <i>p</i> = 0.12). Higher body mass index (BMI) (<i>p</i> &lt; 0.05), more severe disease measured by baseline Movement Disorder Society-Unified Parkinson’s Disease Rating Scale (MDS-UPDRS) part II (<i>p</i> &lt; 0.05), and a trend toward improved Alzheimer’s Disease Assessment Scale-Cognitive Subscale 13 (ADAS-Cog<sub>13</sub>) (<i>p</i> = 0.06) were associated with individuals with falls. No statistically significant associations with falls and treatment-emergent changes were observed. <b><i>Conclusion:</i></b> The association of falls with worse baseline disease severity and higher BMI and overall trend toward improvements on cognitive and motor scales suggest that falls in PRESENCE may be related to increased activity in mevidalen-treated participants at greater risk for falling. Future studies to confirm this hypothesis using fall diaries and digital assessments are necessary.
DOI: 10.6084/m9.figshare.11627460.v1
title: frog gut microbiome

description: The frog gut microbiome
DOI: 10.6084/m9.figshare.8035388.v1
title: Wigger stream temperatures

description: STREAM TEMPERATURE DATA COLLECTED IN THE RIVER WIGGER (SWITZERLAND)<br>Stream temperatures were measured at eleven sites at 15-min intervals by means of HOBO TidbiT v2 loggers. Two loggers per site were deployed.Sites' coordinates and acronyms are specified in SITES_COORDINATES.xlsx. Stream temperatures time series are split into three MS Excel spreadsheets:part 1: Jun 28, 2014 - Dec 31, 2015part 2: Jan 1, 2016 - Jun 30, 2017part 3: Jul 1, 2017 - Apr 23, 2019<br>Time format is GMT +02.Data collection started on Jun 28, 2014 and ended on April 23, 2019. Measurements in site 11 (LUT) started on Sep 29, 2015.Missing data are due to loss of loggers.<br>For further information, please refer to:Luca Carraro, Marco Toffolon, Enrico Bertuzzo, Andrea Rinaldo. SESTET: a Spatially-Explicit Stream Temperature model based on Equilibrium Temperature. Hydrological Processes, under review as of April 2019. <br>contact: Luca Carraro (luca.carraro@eawag.ch)
DOI: 10.17636/corsmal2
title: CORSMAL Containers
DOI: 10.6084/m9.figshare.14229278.v1
title: COVID19_Kaluga_RUS.sav

description: The dataset provides data on psychological states among Russian residents during the COVID-19 pandemic lockdown: positive and negative affect, preferred coping strategies and mutual understanding between parents and children.
DOI: 10.6084/m9.figshare.25264633.v1
title: Entry-level Employee Turnover Intention: Evidence from the Mid-Market Hotels - Dataset

description: Entry-level Employee Turnover Intention: Evidence from the Mid-Market Hotels in Jharkhand, India
DOI: 10.6084/m9.figshare.4584772.v5
title: Partial modified ECG-ViEW II dataset

description: Partial modified ECG-ViEW II dataset
DOI: 10.6084/m9.figshare.12601985.v1
title: Data for "High electrical conductivity in the epitaxial polar metals LaAuGe and LaPtSb"

description: Data for Du, D., Lim, A., Zhang, C., Strohbeen, P. J., Shourov, E. H., Rodolakis, F., McChesney, J. L., Voyles, P. M., Fredrickson, D. C. & Kawasaki, J. K. High electrical conductivity in the epitaxial polar metals LaAuGe and LaPtSb. APL Mater. 7, 121107 (2019). DOI: 10.1063/1.5132339
DOI: 10.6084/m9.figshare.3180265.v1
title: Reptile database data dump 2014-12

description: Complete data dump of the Reptile Database as of Dec 2014. For more details see http://www.reptile-database.org/data/ or the other data dump annotations for data fields.