cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6086387
title: Humpback whale singing activity off the Goan coast in the Eastern Arabian Sea

description: For over two decades, passive acoustic monitoring (PAM) methods have been successfully employed around the world for studying aquatic megafauna. PAM-driven studies in Indian waters have so far been relatively very scarce. Furthermore, cetacean populations inhabiting the north western Indian Ocean are far less studied than those in many other regions around the world. This work likely constitutes the first systematic study of the vocal repertoire of humpback whales (<i>Megaptera novaeangliae</i>) at a near-shore site along the western coast of India. Analysis of the observed vocalizations provides an insight into the behaviour of the species. This is significant as it assists in developing a better understanding of the habitat use of the non-migratory Arabian Sea humpback whale population. In contrast, other breeding populations such as those around the North Atlantic, South Pacific and Australia have been relatively well studied. Underwater passive acoustic data were collected during March 2017 using an autonomous logger at a shallow-water site off the eastern edge of Grande Island off the coast of Goa. Humpback whale vocalizations were found to occur over multiple days in the recordings. Time–frequency contours of individual units of vocalization were extracted with the aid of an automatic detection technique and the characteristics of the units were measured. Further, successive units were analysed for formation of phrases and themes. Reconstruction of putative songs from the identified units and themes was not possible due to the limitations imposed by the nature of data collection. Detailed analyses of units, phrases and themes are presented.
DOI: 10.6084/m9.figshare.6086387.v1
title: Humpback whale singing activity off the Goan coast in the Eastern Arabian Sea

description: For over two decades, passive acoustic monitoring (PAM) methods have been successfully employed around the world for studying aquatic megafauna. PAM-driven studies in Indian waters have so far been relatively very scarce. Furthermore, cetacean populations inhabiting the north western Indian Ocean are far less studied than those in many other regions around the world. This work likely constitutes the first systematic study of the vocal repertoire of humpback whales (<i>Megaptera novaeangliae</i>) at a near-shore site along the western coast of India. Analysis of the observed vocalizations provides an insight into the behaviour of the species. This is significant as it assists in developing a better understanding of the habitat use of the non-migratory Arabian Sea humpback whale population. In contrast, other breeding populations such as those around the North Atlantic, South Pacific and Australia have been relatively well studied. Underwater passive acoustic data were collected during March 2017 using an autonomous logger at a shallow-water site off the eastern edge of Grande Island off the coast of Goa. Humpback whale vocalizations were found to occur over multiple days in the recordings. Time–frequency contours of individual units of vocalization were extracted with the aid of an automatic detection technique and the characteristics of the units were measured. Further, successive units were analysed for formation of phrases and themes. Reconstruction of putative songs from the identified units and themes was not possible due to the limitations imposed by the nature of data collection. Detailed analyses of units, phrases and themes are presented.
DOI: 10.6084/m9.figshare.6086384
title: Sand flow over dune

description: This folder contains the image data file of sand flow over dune in tecplot format.
DOI: 10.6084/m9.figshare.6086384.v1
title: Sand flow over dune

description: This folder contains the image data file of sand flow over dune in tecplot format.
DOI: 10.6084/m9.figshare.6086366
title: Initial field.zip

description: This folder contains the initial condition of Advanced Regional Prediction (ARPS, version5.3.3) for the wind-blown sand simulations.
DOI: 10.6084/m9.figshare.6086366.v1
title: Initial field.zip

description: This folder contains the initial condition of Advanced Regional Prediction (ARPS, version5.3.3) for the wind-blown sand simulations.
DOI: 10.6084/m9.figshare.6086288
title: Supplementary Material for: Expression and Clinical Implication of Autophagy-Associated Protein p62 in Osteosarcoma

description: <b><i>Purpose:</i></b> Recent studies highlight the role of autophagy in cancer tumorigenesis, recurrence, metastasis, and chemoresistance. p62 is an adapter protein that is crucial for the autophagy pathway. In this study, we will describe the expression of p62 and its correlation with clinic prognosis in osteosarcoma. <b><i>Methods:</i></b> Western blot was used to test the expression of p62 in osteosarcoma cell lines (U2OS, KHOS, MG63, Saos-2, U2OSR2, KHOSR2, and 143B). A tissue microarray (TMA) was analyzed by immunohistochemistry to determine the expression levels of p62 in osteosarcoma patients and evaluate any correlation between p62 and clinical characteristics in osteosarcoma patients. <b><i>Results:</i></b> p62 was expressed differently in all cell lines. The TMA also showed differential expression in osteosarcoma tissues. Seventy-five of 79 (94.9%) patient tissues exhibited p62 immunostaining, ranging from no staining (4 of 97, 5.1%) to 1+ staining (40 of 79, 50.6%), 2+ staining (17 of 79, 21.5%), and 3+ staining (18 of 79, 22.8%). The low staining (1+) was classified as the p62 weak group (50.6%), the medium staining (2+) and intense staining (3+) were classified as the p62 strong group (44.3%). Analyzing the clinical data of the osteosarcoma TMA, we found that the 5-year survival rate of patients with weak p62 expression was significantly lower than that of the patients with strong p62 expression (<i>p =</i> 0.0165). Furthermore,<b><i></i></b> the decreased p62 expression may be associated with higher metastatic and chemoresistant rates in osteosarcoma patients. <b><i>Conclusion:</i></b> Our results suggest that p62 may be an effective predictor of prognosis and a potential target for therapy in osteosarcoma.
DOI: 10.6084/m9.figshare.6086288.v1
title: Supplementary Material for: Expression and Clinical Implication of Autophagy-Associated Protein p62 in Osteosarcoma

description: <b><i>Purpose:</i></b> Recent studies highlight the role of autophagy in cancer tumorigenesis, recurrence, metastasis, and chemoresistance. p62 is an adapter protein that is crucial for the autophagy pathway. In this study, we will describe the expression of p62 and its correlation with clinic prognosis in osteosarcoma. <b><i>Methods:</i></b> Western blot was used to test the expression of p62 in osteosarcoma cell lines (U2OS, KHOS, MG63, Saos-2, U2OSR2, KHOSR2, and 143B). A tissue microarray (TMA) was analyzed by immunohistochemistry to determine the expression levels of p62 in osteosarcoma patients and evaluate any correlation between p62 and clinical characteristics in osteosarcoma patients. <b><i>Results:</i></b> p62 was expressed differently in all cell lines. The TMA also showed differential expression in osteosarcoma tissues. Seventy-five of 79 (94.9%) patient tissues exhibited p62 immunostaining, ranging from no staining (4 of 97, 5.1%) to 1+ staining (40 of 79, 50.6%), 2+ staining (17 of 79, 21.5%), and 3+ staining (18 of 79, 22.8%). The low staining (1+) was classified as the p62 weak group (50.6%), the medium staining (2+) and intense staining (3+) were classified as the p62 strong group (44.3%). Analyzing the clinical data of the osteosarcoma TMA, we found that the 5-year survival rate of patients with weak p62 expression was significantly lower than that of the patients with strong p62 expression (<i>p =</i> 0.0165). Furthermore,<b><i></i></b> the decreased p62 expression may be associated with higher metastatic and chemoresistant rates in osteosarcoma patients. <b><i>Conclusion:</i></b> Our results suggest that p62 may be an effective predictor of prognosis and a potential target for therapy in osteosarcoma.
DOI: 10.6084/m9.figshare.6086198
title: Manuscript 12839 CIRCLE FIELD DATA OFFINSO NORTH DISTRICT for AAS.docx

description: This is the raw survey and focus group discussion data on smallholder farmers perception <b>of climatic and socio-economic factors influencing livelihoods in the transition zone of Ghana</b>
DOI: 10.6084/m9.figshare.6086198.v1
title: Manuscript 12839 CIRCLE FIELD DATA OFFINSO NORTH DISTRICT for AAS.docx

description: This is the raw survey and focus group discussion data on smallholder farmers perception <b>of climatic and socio-economic factors influencing livelihoods in the transition zone of Ghana</b>
DOI: 10.6084/m9.figshare.6086171
title: Hydrogeology of continental southern Italy

description: This paper summarizes the results of a study focused on the hydrogeological characterization and recognition of groundwater resources in continental southern Italy, developed under the European INTERREG IIC Programme. The study reconstructed up-to-date scientific knowledge regarding aquifers, groundwater circulation schemes and groundwater resources exploitation in the administrative regions of southern Italy included in the Objective I (Molise, Campania, Basilicata, Puglia and Calabria). In this paper, the methodological approaches applied to synthesize and homogenize bibliographic data collected from the hydrogeological literature and to set a regional hydrogeological mapping are described. Results presented are three hydrogeological maps, 1:300,000 scale, showing hydrogeological units and groundwater flow schemes that are relevant in the regional hydrogeological context, and a brief description of principal types of aquifer and groundwater resources of continental southern Italy.
DOI: 10.6084/m9.figshare.6086171.v1
title: Hydrogeology of continental southern Italy

description: This paper summarizes the results of a study focused on the hydrogeological characterization and recognition of groundwater resources in continental southern Italy, developed under the European INTERREG IIC Programme. The study reconstructed up-to-date scientific knowledge regarding aquifers, groundwater circulation schemes and groundwater resources exploitation in the administrative regions of southern Italy included in the Objective I (Molise, Campania, Basilicata, Puglia and Calabria). In this paper, the methodological approaches applied to synthesize and homogenize bibliographic data collected from the hydrogeological literature and to set a regional hydrogeological mapping are described. Results presented are three hydrogeological maps, 1:300,000 scale, showing hydrogeological units and groundwater flow schemes that are relevant in the regional hydrogeological context, and a brief description of principal types of aquifer and groundwater resources of continental southern Italy.
DOI: 10.6084/m9.figshare.6086162
title: In-situ study--Office environment: Data from paper "Continuous Identification in Smart Environments Using Wrist-Worn Inertial Sensors"

description: Dataset for the in-situ study at the office environment, part of the paper "Continuous Identification in Smart Environments Using Wrist-Worn Inertial Sensors". Data from 14 participants performing their daily routines at the office. For each participants data collection took place during three sessions of approximately 3 hours each.<br>
DOI: 10.6084/m9.figshare.6086162.v1
title: In-situ study--Office environment: Data from paper "Continuous Identification in Smart Environments Using Wrist-Worn Inertial Sensors"

description: Dataset for the in-situ study at the office environment, part of the paper "Continuous Identification in Smart Environments Using Wrist-Worn Inertial Sensors". Data from 14 participants performing their daily routines at the office. For each participants data collection took place during three sessions of approximately 3 hours each.<br>
DOI: 10.6084/m9.figshare.6086159
title: 19-Class Satellite Scene Dataset

description: Source: http://www.escience.cn/people/yangwen/WHU-RS19.html
DOI: 10.6084/m9.figshare.6086159.v1
title: Untitled Item

description: Source: http://www.escience.cn/people/yangwen/WHU-RS19.html
DOI: 10.6084/m9.figshare.6086159.v2
title: 19-Class Satellite Scene Dataset

description: Source: http://www.escience.cn/people/yangwen/WHU-RS19.html
DOI: 10.6084/m9.figshare.6086150
title: Supplementary Material for: Temporal Trends of Stroke Epidemiology in Southern Sweden: A Population-Based Study on Stroke Incidence and Early Case-Fatality

description: <b><i>Background:</i></b> Up-to-date epidemiological stroke studies are important for healthcare planning and evaluating prevention strategies. This population-based study investigates temporal trends in stroke incidence and case-fatality in southern Sweden. <b><i>Methods:</i></b> First-ever stroke cases in the local catchment area of Skåne University Hospital in Lund, Sweden, between March, 2015 and February, 2016, were included from several sources, including 2 prospective hospital-based registers, retrospective screening of primary care visits, and autopsy registers. Stroke incidence and 28-day case-fatality rates were compared with data from this area obtained through similar methodology between March, 2001 and February, 2002. <b><i>Results:</i></b> Altogether, 456 and 413 first-ever stroke patients were identified during the earlier and later time periods respectively. The age- and sex-standardized stroke incidence rates decreased from 246 (95% CI 224–270) to 165 (95% CI 149–182) per 100,000 people. However, incidence remained unaltered among those &lt;65 years. Early case-fatality decreased from 14 to 11% (<i>p</i> = 0.165). ­<b><i>Conclusion:</i></b> First-ever stroke incidence in southern Sweden has decreased to 33% since the beginning of this millennium. Incidence rates have decreased among the elderly but remain unchanged among younger age groups. Our findings warrant further studies on trends in risk factor profiles and effects of prevention strategies, and heightened focus on stroke in the young.
DOI: 10.6084/m9.figshare.6086150.v1
title: Supplementary Material for: Temporal Trends of Stroke Epidemiology in Southern Sweden: A Population-Based Study on Stroke Incidence and Early Case-Fatality

description: <b><i>Background:</i></b> Up-to-date epidemiological stroke studies are important for healthcare planning and evaluating prevention strategies. This population-based study investigates temporal trends in stroke incidence and case-fatality in southern Sweden. <b><i>Methods:</i></b> First-ever stroke cases in the local catchment area of Skåne University Hospital in Lund, Sweden, between March, 2015 and February, 2016, were included from several sources, including 2 prospective hospital-based registers, retrospective screening of primary care visits, and autopsy registers. Stroke incidence and 28-day case-fatality rates were compared with data from this area obtained through similar methodology between March, 2001 and February, 2002. <b><i>Results:</i></b> Altogether, 456 and 413 first-ever stroke patients were identified during the earlier and later time periods respectively. The age- and sex-standardized stroke incidence rates decreased from 246 (95% CI 224–270) to 165 (95% CI 149–182) per 100,000 people. However, incidence remained unaltered among those &lt;65 years. Early case-fatality decreased from 14 to 11% (<i>p</i> = 0.165). ­<b><i>Conclusion:</i></b> First-ever stroke incidence in southern Sweden has decreased to 33% since the beginning of this millennium. Incidence rates have decreased among the elderly but remain unchanged among younger age groups. Our findings warrant further studies on trends in risk factor profiles and effects of prevention strategies, and heightened focus on stroke in the young.
DOI: 10.6084/m9.figshare.6086138
title: Uploaded file 11: Tree file for Ascomycota LSU-rRNA barcoding analysis

description: LSU-rRNA based molecular barcoding of yeasts, phylogenetic tree file.
DOI: 10.6084/m9.figshare.6086138.v1
title: Uploaded file 11: Tree file for Ascomycota LSU-rRNA barcoding analysis

description: LSU-rRNA based molecular barcoding of yeasts, phylogenetic tree file.
DOI: 10.6084/m9.figshare.6086132
title: Uploaded file 10: Trimmed alignment of centroid sequences for Ascomycota LSU-rRNA barcoding analysis

description: LSU-rRNA based molecular barcoding of yeasts, trimmed centroid sequence alignment file.
DOI: 10.6084/m9.figshare.6086132.v1
title: Uploaded file 10: Trimmed alignment of centroid sequences for Ascomycota LSU-rRNA barcoding analysis

description: LSU-rRNA based molecular barcoding of yeasts, trimmed centroid sequence alignment file.
DOI: 10.6084/m9.figshare.6086129
title: Uploaded file 9: Aligned centroid sequences for Ascomycota LSU-rRNA barcoding analysis

description: LSU-rRNA based molecular barcoding of yeasts, centroid sequence alignment file.
DOI: 10.6084/m9.figshare.6086129.v1
title: Uploaded file 9: Aligned centroid sequences for Ascomycota LSU-rRNA barcoding analysis

description: LSU-rRNA based molecular barcoding of yeasts, centroid sequence alignment file.
DOI: 10.6084/m9.figshare.6086126
title: Uploaded file 8: Centroid sequences for Ascomycota LSU-rRNA barcoding analysis

description: LSU-rRNA based molecular barcoding of yeasts, centroid sequences file.
DOI: 10.6084/m9.figshare.6086126.v1
title: Uploaded file 8: Centroid sequences for Ascomycota LSU-rRNA barcoding analysis

description: LSU-rRNA based molecular barcoding of yeasts, centroid sequences file.
DOI: 10.6084/m9.figshare.6086120
title: Uploaded file 7: Sequence data for Ascomycota LSU-rRNA barcoding analysis

description: LSU-rRNA based molecular barcoding of yeasts, sequence data file.<br>
DOI: 10.6084/m9.figshare.6086114
title: Uploaded file 6: Tree file for figure 3 b (465 orthologs)

description: A tree file for the tree of 465 orthologs presented as Figure 3B.
DOI: 10.6084/m9.figshare.6086114.v1
title: Uploaded file 6: Tree file for figure 3 a (465 orthologs)

description: A tree file for the tree of 465 orthologs presented as Figure 3A.
DOI: 10.6084/m9.figshare.6086105
title: Uploaded file 5: partition file for figure 3 b (465 orthologs)

description: A partition file for the tree of 465 orthologs presented as Figure 3B.
DOI: 10.6084/m9.figshare.6086102
title: Uploaded file 4: Sequence alignment for figure 3 b (465 orthologs)

description: A sequence alignment for the tree of 465 orthologs presented as Figure 3B.
DOI: 10.6084/m9.figshare.6086096
title: Uploaded file 3: Tree file for figure 3 a (118 orthologs)

description: A sequence alignment for the tree of 118 orthologs presented as Figure 3A.
DOI: 10.6084/m9.figshare.6086087
title: Uploaded file 2: Partition file for figure 3 a (118 orthologs)

description: Partition file for the tree of 118 orthologs presented as Figure 3A.
DOI: 10.6084/m9.figshare.6086075
title: Supplementary Material for: Combination of Mean Platelet Volume/Platelet Count Ratio and the APACHE II Score Better Predicts the Short-Term Outcome in Patients with Acute Kidney Injury Receiving Continuous Renal Replacement Therapy

description: <b><i>Background/Aims:</i></b> Both the Acute physiology and Chronic Health Evaluation (APACHE II) score and mean platelet volume/platelet count Ratio (MPR) can independently predict adverse outcomes in critically ill patients. This study was aimed to investigate whether the combination of them could have a better performance in predicting prognosis of patients with acute kidney injury (AKI) who received continuous renal replacement therapy (CRRT). <b><i>Methods:</i></b> Two hundred twenty-three patients with AKI who underwent CRRT between January 2009 and December 2014 in a Chinese university hospital were enrolled. They were divided into survivals group and non-survivals group based on the situation at discharge. Receiver Operating Characteristic (ROC) curve was used for MPR and APACHE II score, and to determine the optimal cut-off value of MPR for in-hospital mortality. Factors associated with mortality were identified by univariate and multivariate logistic regression analysis. <b><i>Results:</i></b> The mean age of the patients was 61.4 years, and the overall in-hospital mortality was 48.4%. Acute cardiorenal syndrome (ACRS) was the most common cause of AKI. The optimal cut-off value of MPR for mortality was 0.099 with an area under the ROC curve (AUC) of 0.636. The AUC increased to 0.851 with the addition of the APACHE II score. The mortality of patients with of MPR &gt; 0.099 was 56.4%, which was significantly higher than that of the control group with of ≤ 0.099 (39.6%, P= 0.012). Logistic regression analysis showed that average number of organ failure (OR = 2.372), APACHE II score (OR = 1.187), age (OR = 1.028) and vasopressors administration (OR = 38.130) were significantly associated with poor prognosis. <b><i>Conclusion:</i></b> Severity of illness was significantly associated with prognosis of patients with AKI. The combination of MPR and APACHE II score may be helpful in predicting the short-term outcome of AKI.
DOI: 10.6084/m9.figshare.6086030
title: In-situ study--Home environment: Data from paper "Continuous Identification in Smart Environments Using Wrist-Worn Inertial Sensors"

description: Dataset for the in-situ study at home environment, part of the paper "Continuous Identification in Smart Environments Using Wrist-Worn Inertial Sensors". Data from 8 participants performing their daily routines at home. For each participants data collection took place during three sessions of approximately 3 hours each.<br>
DOI: 10.6084/m9.figshare.6086030.v1
title: In-situ study--Home environment: Data from paper "Continuous Identification in Smart Environments Using Wrist-Worn Inertial Sensors"

description: Dataset for the in-situ study at home environment, part of the paper "Continuous Identification in Smart Environments Using Wrist-Worn Inertial Sensors". Data from 8 participants performing their daily routines at home. For each participants data collection took place during three sessions of approximately 3 hours each.<br>
DOI: 10.6084/m9.figshare.6085982
title: Morphometric data of mahseers of peninsular India.xls

description: Morphometric data of mahseers of peninsular India.
DOI: 10.6084/m9.figshare.6085982.v1
title: Morphometric data of mahseers of peninsular India.xls

description: Morphometric data of mahseers of peninsular India.
DOI: 10.6084/m9.figshare.6085976
title: UCM image dataset

description: Source: http://weegee.vision.ucmerced.edu/datasets/landuse.html
DOI: 10.6084/m9.figshare.6085976.v1
title: UCM image dataset

description: Source: http://weegee.vision.ucmerced.edu/datasets/landuse.html
DOI: 10.6084/m9.figshare.6085952
title: Uploaded file 1: Sequence alignment for figure 3 a (118 orthologs)

description: A sequence alignment for the tree of 118 orthologs presented as Figure 3A. <br><br><br>
DOI: 10.6084/m9.figshare.6085949
title: Supplementary Material for: Proteomic Profiling of Diffuse Large B-Cell Lymphomas

description: <b><i>Objective:</i></b> The aim of this study was to identify differences in proteome profiles of diffuse large B-cell lymphoma (DLBCL) of nongerminal center (non-GC) versus GC type in the search for new markers and drug targets. <b><i>Methods:</i></b> Six DLBCL, with 3 repeats for each, were used for the initial study by proteomics: 3 non-GC and 3 GC DLBCL cases. For immunohistochemistry, tissue microarrays were made from 31 DLBCL samples: 16 non-GC de novo lymphomas and 15 GC cases (11 transformed from follicular lymphomas and 4 de novo GC lymphomas). Proteome profiling was performed by two-dimensional gel electrophoresis and MALDI-TOF mass spectrometry. <b><i>Results:</i></b> Ninety-one proteins were found differentially expressed in non-GC compared to GC type. The Cytoscape tool was used for systemic analysis of proteomics data, revealing 19 subnetworks representing functions affected in non-GC versus GC types of DLBCL. <b><i>Conclusion:</i></b> A validation study of 3 selected proteins (BiP/Grp78, Hsp90, and cyclin B2) showed the enhanced expression in non-GC DLBCL, supporting the proteomics data.