cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.447jbm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Eleutherodactylus coqui Thomas, 1966)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015852-250525065834625/datasets/export for details.
DOI: 10.15468/dl.bm977u
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Schistura similis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049339-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.97rybg
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((6.35277 34.24421,42.64723 34.24421,42.64723 48.75579,6.35277 48.75579,6.35277 34.24421))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tulipa rhodopea"
 ]
}

 The dataset includes 14 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049340-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2jjhwb
title: Occurrence Download

description: A dataset containing 38776 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-107.17318 -20.60296,-103.9905 -30.29602,-78.57481 -30.0072,-76.17423 -17.95671,-107.17318 -20.60296))"
 ]
}

 The dataset includes 38776 records from 175 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004253-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17684380
title: EarlyDetectionHBOC_Raw_Data
DOI: 10.5281/zenodo.2623815
title: S12 | NORMANEWS | NormaNEWS for Retrospective Screening of New Emerging Contaminants

description: NormaNEWS (NORMAN Early Warning System) is a list of emerging contaminants for retrospective screening across Europe. List provided by Nikiforos Alygizakis, Saer Samanipour and Kevin Thomas. See Alygizakis et al 2018 DOI: 10.1021/acs.est.8b00365. Related list: S62, NORMANEWS2. Dataset DOI: 10.5281/zenodo.2623815.
description: For more author details see associated publication: DOI: 10.1021/acs.est.8b00365
DOI: 10.5281/zenodo.2623816
title: S12 | NORMANEWS | NormaNEWS for Retrospective Screening of New Emerging Contaminants

description: NormaNEWS (NORMAN Early Warning System) is a list of emerging contaminants for retrospective screening across Europe. List provided by Nikiforos Alygizakis, Saer Samanipour and Kevin Thomas. See Alygizakis et al 2018 DOI: 10.1021/acs.est.8b00365. Related list: S62, NORMANEWS2. Dataset DOI: 10.5281/zenodo.2623815.
description: For more author details see associated publication: DOI: 10.1021/acs.est.8b00365
DOI: 10.6084/m9.figshare.30610376
title: Tailoring cognitive assistance for individuals with a traumatic brain injury using assistive technology for cognition: translating clinical reasoning into ontologies

description: Individuals with a traumatic brain injury (TBI) frequently require cognitive assistance to engage in complex activities, emphasising the need for personalised support to enhance their independence. This study explored how occupational therapists use evaluation results to tailor cognitive assistance and translated these results into clinical reasoning ontologies that could be integrated into assistive technologies for cognition (ATCs). Fifteen occupational therapists and occupational therapy master’s students participated in focus groups presenting case studies of clients with moderate to severe TBI. Participants were asked how they would adapt cognitive assistance provided during interventions based on evaluation results and client characteristics. Thematic analysis was employed. Clinical reasoning ontologies were developed in interdisciplinary team meetings. Analysing clients’ behaviours and the assistance provided during an Activities of Daily Living evaluation, participants determined the minimum cognitive assistance required for clients to progress in their tasks. Therapists suggested using evaluation results to inform initial cognitive assistance while also considering task characteristics, the intervention session goal and the treatment approach. Adjustments were made to progress the assistance by observing difficulties and responses to assistance during both individual sessions and across multiple sessions. The ontology represents a customisable assistance model, allowing cognitive assistance to evolve according to the context and the user profile. This study presents ontologies reflecting the clinical reasoning used by occupational therapists to tailor cognitive assistance during interventions for individuals with a TBI. Further work is needed to enable the implementation of these clinical reasoning ontologies into ATCs. Occupational therapists adapt the initial cognitive assistance they provide during the intervention phase based on the minimal required cognitive assistance for task completion, and adjust it according to task difficulty and treatment session objectives.Post-task feedback is key in supporting the adjustment of cognitive assistance across sessions.Using the developed ontology, assistive technologies for cognition could be developed to provide progressive and personalised assistance both during one session and across sessions. Occupational therapists adapt the initial cognitive assistance they provide during the intervention phase based on the minimal required cognitive assistance for task completion, and adjust it according to task difficulty and treatment session objectives. Post-task feedback is key in supporting the adjustment of cognitive assistance across sessions. Using the developed ontology, assistive technologies for cognition could be developed to provide progressive and personalised assistance both during one session and across sessions.
DOI: 10.6084/m9.figshare.30610376.v1
title: Tailoring cognitive assistance for individuals with a traumatic brain injury using assistive technology for cognition: translating clinical reasoning into ontologies

description: Individuals with a traumatic brain injury (TBI) frequently require cognitive assistance to engage in complex activities, emphasising the need for personalised support to enhance their independence. This study explored how occupational therapists use evaluation results to tailor cognitive assistance and translated these results into clinical reasoning ontologies that could be integrated into assistive technologies for cognition (ATCs). Fifteen occupational therapists and occupational therapy master’s students participated in focus groups presenting case studies of clients with moderate to severe TBI. Participants were asked how they would adapt cognitive assistance provided during interventions based on evaluation results and client characteristics. Thematic analysis was employed. Clinical reasoning ontologies were developed in interdisciplinary team meetings. Analysing clients’ behaviours and the assistance provided during an Activities of Daily Living evaluation, participants determined the minimum cognitive assistance required for clients to progress in their tasks. Therapists suggested using evaluation results to inform initial cognitive assistance while also considering task characteristics, the intervention session goal and the treatment approach. Adjustments were made to progress the assistance by observing difficulties and responses to assistance during both individual sessions and across multiple sessions. The ontology represents a customisable assistance model, allowing cognitive assistance to evolve according to the context and the user profile. This study presents ontologies reflecting the clinical reasoning used by occupational therapists to tailor cognitive assistance during interventions for individuals with a TBI. Further work is needed to enable the implementation of these clinical reasoning ontologies into ATCs. Occupational therapists adapt the initial cognitive assistance they provide during the intervention phase based on the minimal required cognitive assistance for task completion, and adjust it according to task difficulty and treatment session objectives.Post-task feedback is key in supporting the adjustment of cognitive assistance across sessions.Using the developed ontology, assistive technologies for cognition could be developed to provide progressive and personalised assistance both during one session and across sessions. Occupational therapists adapt the initial cognitive assistance they provide during the intervention phase based on the minimal required cognitive assistance for task completion, and adjust it according to task difficulty and treatment session objectives. Post-task feedback is key in supporting the adjustment of cognitive assistance across sessions. Using the developed ontology, assistive technologies for cognition could be developed to provide progressive and personalised assistance both during one session and across sessions.
DOI: 10.5281/zenodo.2624118
title: S13 | EUCOSMETICS | Combined Inventory of Ingredients Employed in Cosmetic Products (2000) and Revised Inventory (2006)

description: Combined Inventory of Ingredients Employed in Cosmetic Products (2000) and Revised Inventory (2006) from the scientific committee on cosmetic products and non-food products intended for consumers - SCCNFP/0389/00 Final and Commission Decision 2006/257/EC amending the Decision 96/335/EC. Provided by Peter von der Ohe, UBA, curated by Reza Aalizadeh, University of Athens. Dataset DOI: 10.5281/zenodo.2624118.

Update 12 May 2020: Added the source data from both reports (INCI-2000 and Decision 96/335/EC), including the function information and undefined structures. Update 28 May 2020: removed incomplete structural information from Decision 96/335/EC files. Update 24/7/2020: corrected one synonym reported by PubChem (GFMHHNOUDDHEOO-UHFFFAOYSA-N).
description: Sourced from EU Reports
DOI: 10.5281/zenodo.3959386
title: S13 | EUCOSMETICS | Combined Inventory of Ingredients Employed in Cosmetic Products (2000) and Revised Inventory (2006)

description: Combined Inventory of Ingredients Employed in Cosmetic Products (2000) and Revised Inventory (2006) from the scientific committee on cosmetic products and non-food products intended for consumers - SCCNFP/0389/00 Final and Commission Decision 2006/257/EC amending the Decision 96/335/EC. Provided by Peter von der Ohe, UBA, curated by Reza Aalizadeh, University of Athens. Dataset DOI: 10.5281/zenodo.2624118.

Update 12 May 2020: Added the source data from both reports (INCI-2000 and Decision 96/335/EC), including the function information and undefined structures. Update 28 May 2020: removed incomplete structural information from Decision 96/335/EC files. Update 24/7/2020: corrected one synonym reported by PubChem (GFMHHNOUDDHEOO-UHFFFAOYSA-N).
description: Sourced from EU Reports
DOI: 10.6084/m9.figshare.30689267
title: Pseudolycoriella hygida genome

description: Pseudolycoriella hygida genome processed for AUGUSTUS training data
DOI: 10.6084/m9.figshare.30689267.v1
title: Pseudolycoriella hygida genome

description: Pseudolycoriella hygida genome processed for AUGUSTUS training data
DOI: 10.15468/dl.c6sw6c
title: Occurrence Download

description: A dataset containing 1300 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pithecopus hypochondrialis"
 ]
}

 The dataset includes 1300 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004255-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.azyth6
title: Occurrence Download

description: A dataset containing 72681 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is Portugal",
 "TaxonKey is one of (Florideophyceae, Bangiophyceae, Ulvophyceae, Phaeophyceae, Dictyochophyceae)",
 "Year 1950-2025"
 ]
}

 The dataset includes 72681 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004252-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pu7rm5
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Nasua nasua"
 ]
}

 The dataset includes 52 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004256-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t8eqw8
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Nasua nasua"
 ]
}

 The dataset includes 52 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004257-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.3544805
title: S14 | KEMIPFAS | PFAS Highly Fluorinated Substances List: KEMI

description: PFAS Highly Fluorinated Substances List, taken from Appendix 2 of the Swedish Chemicals Agency KEMI Report 7/15. Provided by Stellan Fischer, KEMI. Registration and mapping to CompTox Dashboard by Antony Williams, US EPA. Dataset DOI: 10.5281/zenodo.2621524.

Nov 17 2019 update: added CSV files for PubChem upload.
DOI: 10.5281/zenodo.2621524
title: S14 | KEMIPFAS | PFAS Highly Fluorinated Substances List: KEMI

description: PFAS Highly Fluorinated Substances List, taken from Appendix 2 of the Swedish Chemicals Agency KEMI Report 7/15. Provided by Stellan Fischer, KEMI. Registration and mapping to CompTox Dashboard by Antony Williams, US EPA. Dataset DOI: 10.5281/zenodo.2621524.

Nov 17 2019 update: added CSV files for PubChem upload.
DOI: 10.5281/zenodo.17691435
title: Energy Equilibrium Manifold for Qubit Coherence Stabilization in Gaussian-Coupled Field Models

description: This revised version (v1.1) introduces several major improvements compared to the previous release:

1. Added a physically consistent open-system model

The qubit–bosonic–mode system is now described using a full Lindblad master equation, including:





relaxation (T1),




non-geometric dephasing,




bosonic-mode damping,




realistic mode–reduction from a Gaussian scalar field.



This makes the model experimentally testable and physically grounded.

2. New coherence-stabilization mechanism validated in an open system

We demonstrate that the proposed Energy-Balance Manifold(Δlog⁡=0) acts as a true coherence sweet-spot,even when dissipation is present.

The previous version only discussed this at a conceptual level.

3. Improved numerical simulations

All figures have been recomputed using the new codebase:





2D manifold maps,




analytic suppression law,




3D coherence surface,




Ramsey and Spin-Echo simulations.



All numerical scripts are now included in /Code and all datasets in /Data,making the results fully reproducible.

4. Added figure references, cross-citations and expanded physical explanation

The manuscript now contains:





figure-by-figure captions,




in-text references to Figures 1–10,




an expanded physical motivation for the bosonic-mode reduction,




a new section 4.5 Open-System Extension and Realistic Decoherence Channels.



5. Complete package archive with checksums

The ZIP now contains:





report,




code,




figures,




data,




checksum file,




README file.



This enables independent verification of all results.
DOI: 10.5281/zenodo.17611118
title: Energy Equilibrium Manifold for Qubit Coherence Stabilization in Gaussian-Coupled Field Models

description: This revised version (v1.1) introduces several major improvements compared to the previous release:

1. Added a physically consistent open-system model

The qubit–bosonic–mode system is now described using a full Lindblad master equation, including:





relaxation (T1),




non-geometric dephasing,




bosonic-mode damping,




realistic mode–reduction from a Gaussian scalar field.



This makes the model experimentally testable and physically grounded.

2. New coherence-stabilization mechanism validated in an open system

We demonstrate that the proposed Energy-Balance Manifold(Δlog⁡=0) acts as a true coherence sweet-spot,even when dissipation is present.

The previous version only discussed this at a conceptual level.

3. Improved numerical simulations

All figures have been recomputed using the new codebase:





2D manifold maps,




analytic suppression law,




3D coherence surface,




Ramsey and Spin-Echo simulations.



All numerical scripts are now included in /Code and all datasets in /Data,making the results fully reproducible.

4. Added figure references, cross-citations and expanded physical explanation

The manuscript now contains:





figure-by-figure captions,




in-text references to Figures 1–10,




an expanded physical motivation for the bosonic-mode reduction,




a new section 4.5 Open-System Extension and Realistic Decoherence Channels.



5. Complete package archive with checksums

The ZIP now contains:





report,




code,




figures,




data,




checksum file,




README file.



This enables independent verification of all results.
DOI: 10.15468/dl.6gpu6q
title: Occurrence Download

description: A dataset containing 262 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-135.14713 -4.15919,-57.69892 -4.15919,-57.69892 41.28419,-135.14713 41.28419,-135.14713 -4.15919))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Mobula munkiana"
 ]
}

 The dataset includes 262 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004259-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.2624273
title: S15 | NORMANPRI | NORMAN Priority List

description: Priority substances from NORMAN WG-1 (Prioritisation), provided by Valeria Dulio. Dataset DOI: 10.5281/zenodo.2624272.
DOI: 10.5281/zenodo.2624272
title: S15 | NORMANPRI | NORMAN Priority List

description: Priority substances from NORMAN WG-1 (Prioritisation), provided by Valeria Dulio. Dataset DOI: 10.5281/zenodo.2624272.
DOI: 10.5281/zenodo.2624324
title: S16 | FRENCHLIST | French Monitoring List

description: French Monitoring List Provided by Valeria Dulio, curated by Reza Aalizadeh, University of Athens. Dataset DOI: 10.5281/zenodo.2624324.
DOI: 10.5281/zenodo.2624325
title: S16 | FRENCHLIST | French Monitoring List

description: French Monitoring List Provided by Valeria Dulio, curated by Reza Aalizadeh, University of Athens. Dataset DOI: 10.5281/zenodo.2624324.
DOI: 10.15468/dl.p2py57
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthagrion rubrifrons",
 "DecimalLongitude is not null",
 "DecimalLatitude is not null"
 ]
}

 The dataset includes 11 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004260-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2yfx5j
title: Occurrence Download

description: A dataset containing 54100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is one of (Saint Vincent and the Grenadines, Grenada)"
 ]
}

 The dataset includes 54100 records from 443 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004258-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ey7n8p
title: Occurrence Download

description: A dataset containing 1067506 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((13.62339 51.33319,11.69839 50.52005,12.40085 49.86712,14.75137 50.6744,13.62339 51.33319))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 1067506 records from 315 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030950-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17600907
title: IWP_totalbeweis_
DOI: 10.15468/dl.xaefq2
title: Occurrence Download

description: A dataset containing 458 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hylodes asper"
 ]
}

 The dataset includes 458 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031017-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17598276
title: The first nested association mapping (NAM) population for outbreeding Italian ryegrass reveals candidate genes for seed shattering and related traits

description: The file NAM_all_origin.csv contains the phenotypic, the file offspring_q30_dp3_fi_m7_imputed_w200_istat250_maf02_ann.vcf.gz contains the genotypic (imputed SNPs) data described in the article published on bioRxiv https://www.biorxiv.org/content/10.1101/2025.10.22.683898v1 .
DOI: 10.5281/zenodo.17598277
title: The first nested association mapping (NAM) population for outbreeding Italian ryegrass reveals candidate genes for seed shattering and related traits

description: The file NAM_all_origin.csv contains the phenotypic, the file offspring_q30_dp3_fi_m7_imputed_w200_istat250_maf02_ann.vcf.gz contains the genotypic (imputed SNPs) data described in the article published on bioRxiv https://www.biorxiv.org/content/10.1101/2025.10.22.683898v1 .