cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23576973
title: <strong>When adaptation is slowed down: genomic analysis of evolutionary stasis in thermal tolerance during biological invasion in a novel climate</strong>

description: Analysis scripts and data files associated with Bock et al. (2023, Molecular Ecology): When adaptation is slowed down: genomic analysis of evolutionary stasis in thermal tolerance during biological invasion in a novel climate. <br> The README.txt file provides additional information on the contents of this archive.
DOI: 10.21227/qtgh-sm74
title: Multi-trip Multi-depot Rural Postman Problem instances

description: The dataset consists of undirected weighted multi-graphs stored in .pkl or .net formats. These undirected graphs form instances for the multi-trip multi-depot rural postman problem. The Multi-trip multi-depot Rural Postman Problem is a variant of the Capacitated Arc Routing Problem which is to find a set of routes for vehicles having limited capacity to traverse a set of arcs from a node called depot in an undirected graph in the least possible time. The dataset consists of instances generated by modifying instances from the literature and also real-world road networks. The graph stored in .pkl or .net format can be accessed using the main.py python file.
DOI: 10.25442/hku.23187485
title: Supporting data for The Interaction Mechanism between Biphasic Systems in Suspension Printing and Its Application in Constructing Organ Models

description: This data package includes the work during my PhD program (2019-2023) on suspension bioprinting. The main components of this work consist of the construction and evaluation of ink and suspension system in the suspension printing, the development and assessment of infiltration-induced suspension printing technology, the development and assessment of inverse phase suspension printing technology, and explorations of the applications of these two novel printing technologies in the field of biomedicine.
DOI: 10.25442/hku.23187485.v1
title: Supporting data for The Interaction Mechanism between Biphasic Systems in Suspension Printing and Its Application in Constructing Organ Models

description: This data package includes the work during my PhD program (2019-2023) on suspension bioprinting. The main components of this work consist of the construction and evaluation of ink and suspension system in the suspension printing, the development and assessment of infiltration-induced suspension printing technology, the development and assessment of inverse phase suspension printing technology, and explorations of the applications of these two novel printing technologies in the field of biomedicine.
DOI: 10.25442/hku.23254526
title: <strong>Supporting data for Teachers’ beliefs and practices about Chinese vocabulary teaching</strong>

description: Phase One study used qualitative data from interviews (N=20), observations (N=8), stimulated recall interviews (N=8), and assessment documents (N=8) to investigate teachers’ beliefs and practices about Chinese vocabulary teaching and their relationship. Based on the findings, questionnaires were developed and validated for the Phase Two quantitative study to further investigate teachers’ beliefs and practices, and their relationship (N=337). Phase Three study collected quantitative data from student tests (N=1228) to explore the effect of teachers’ vocabulary teaching on students’ achievement in vocabulary knowledge and reading comprehension.
DOI: 10.25442/hku.23254526.v1
title: <strong>Supporting data for Teachers’ beliefs and practices about Chinese vocabulary teaching</strong>

description: Phase One study used qualitative data from interviews (N=20), observations (N=8), stimulated recall interviews (N=8), and assessment documents (N=8) to investigate teachers’ beliefs and practices about Chinese vocabulary teaching and their relationship. Based on the findings, questionnaires were developed and validated for the Phase Two quantitative study to further investigate teachers’ beliefs and practices, and their relationship (N=337). Phase Three study collected quantitative data from student tests (N=1228) to explore the effect of teachers’ vocabulary teaching on students’ achievement in vocabulary knowledge and reading comprehension.
DOI: 10.25442/hku.23254568
title: Supporting data for "N, N-dimethyltryptamine, a natural hallucinogen, protects intracellular signaling and neurogenesis in in vivo and in vitro models of Alzheimer’s disease"

description: This is the support data for the PhD thesis entitled “N, N-dimethyltryptamine, a natural hallucinogen, protects againstdementia via modulating calcium-mediated intracellular signaling and neurogenesis in in vivo and in vitro models ofAlzheimer’s disease”. To study the acute effect and the chronic effect with a high dose and the micro does of DMT administration. The in vivo and invitro models of Alzheimer’s disease were used in this study. And many experimental methods, including the CCK-8, confocal, LTP, fiber cytometry recording, animal behavioral study, etc, were used in this study, the support data were shown in the files.
DOI: 10.25442/hku.23254568.v1
title: Supporting data for "N, N-dimethyltryptamine, a natural hallucinogen, protects intracellular signaling and neurogenesis in in vivo and in vitro models of Alzheimer’s disease"

description: This is the support data for the PhD thesis entitled “N, N-dimethyltryptamine, a natural hallucinogen, protects againstdementia via modulating calcium-mediated intracellular signaling and neurogenesis in in vivo and in vitro models ofAlzheimer’s disease”. To study the acute effect and the chronic effect with a high dose and the micro does of DMT administration. The in vivo and invitro models of Alzheimer’s disease were used in this study. And many experimental methods, including the CCK-8, confocal, LTP, fiber cytometry recording, animal behavioral study, etc, were used in this study, the support data were shown in the files.
DOI: 10.25442/hku.23255621
title: <strong>Supporting data for “Mechanotransducing Hydrogel for Switching Enzyme Reaction via Modulation of Multivalent Interactions"</strong>

description: This dataset is the supporting data for the thesis entitled Mechanotransducing Hydrogel for Switching Enzyme Reaction via Modulation of Multivalent Interactions. It encompasses the physical characterization results of designed mechano-responsive hydrogels, including compression test, absorption spectra, FTIR spectra, and SEM images. Mechanical force is ubiquitously present in living organisms and functions in many biological processes. Inspired by natural mechanotransduction behaviors, we proposed a universal strategy to design a smart hydrogel for mechanotransduction into enzyme reactions and further exploration on the development of mechano-responsive hydrogels with various functions. <br> <br>
DOI: 10.25442/hku.23255621.v1
title: <strong>Supporting data for “Mechanotransducing Hydrogel for Switching Enzyme Reaction via Modulation of Multivalent Interactions"</strong>

description: This dataset is the supporting data for the thesis entitled Mechanotransducing Hydrogel for Switching Enzyme Reaction via Modulation of Multivalent Interactions. It encompasses the physical characterization results of designed mechano-responsive hydrogels, including compression test, absorption spectra, FTIR spectra, and SEM images. Mechanical force is ubiquitously present in living organisms and functions in many biological processes. Inspired by natural mechanotransduction behaviors, we proposed a universal strategy to design a smart hydrogel for mechanotransduction into enzyme reactions and further exploration on the development of mechano-responsive hydrogels with various functions. <br> <br>
DOI: 10.5281/zenodo.8080175
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by August Grisebach, http://www.wikidata.org/entity/Q76351. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q76351
DOI: 10.5281/zenodo.8080174
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by August Grisebach, http://www.wikidata.org/entity/Q76351. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q76351
DOI: 10.5281/zenodo.8080177
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Martin Gusinde, http://www.wikidata.org/entity/Q84866. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q84866
DOI: 10.25442/hku.23256071
title: The raw data for the thesis submitted by Yue SUI entitled "Non-Alcoholic Fatty Liver Disease Promotes Breast Cancer Progression Through Upregulated Hepatic Fibroblast Growth Factor 21"

description: The overall objective of this thesis was to find out the mechanism supporting the tumor-promoting effects of non-alcoholic fatty liver disease on breast cancer progression. The method and techniques used include cell culture, immunostaining, histological study, fowl cytometry, and PCR. Animal studies approved with CULATR No. 5895-21, 4483-16. Human study approved and supervised by the Committee on the Sun Yat-sen University.
DOI: 10.25442/hku.23256071.v1
title: The raw data for the thesis submitted by Yue SUI entitled "Non-Alcoholic Fatty Liver Disease Promotes Breast Cancer Progression Through Upregulated Hepatic Fibroblast Growth Factor 21"

description: The overall objective of this thesis was to find out the mechanism supporting the tumor-promoting effects of non-alcoholic fatty liver disease on breast cancer progression. The method and techniques used include cell culture, immunostaining, histological study, fowl cytometry, and PCR. Animal studies approved with CULATR No. 5895-21, 4483-16. Human study approved and supervised by the Committee on the Sun Yat-sen University.
DOI: 10.34740/kaggle/dsv/6023954
title: Pypi sython panda
DOI: 10.5281/zenodo.8080189
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Werner Rauh, http://www.wikidata.org/entity/Q67602. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q67602
DOI: 10.5281/zenodo.8080188
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Werner Rauh, http://www.wikidata.org/entity/Q67602. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q67602
DOI: 10.5281/zenodo.8080191
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Karl August Gustav Fiebrig, http://www.wikidata.org/entity/Q5958231. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q5958231
DOI: 10.5281/zenodo.8080190
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Karl August Gustav Fiebrig, http://www.wikidata.org/entity/Q5958231. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q5958231
DOI: 10.5281/zenodo.8080195
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Ignaz Dörfler, http://www.wikidata.org/entity/Q4172636. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q4172636
DOI: 10.5281/zenodo.8080197
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Wilibald Lechler, http://www.wikidata.org/entity/Q6167484. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q6167484
DOI: 10.5281/zenodo.8080199
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Philibert Commerson, http://www.wikidata.org/entity/Q595066. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q595066
DOI: 10.5281/zenodo.8080201
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Heinz Brücher, http://www.wikidata.org/entity/Q65475. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q65475
DOI: 10.5281/zenodo.8080200
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Heinz Brücher, http://www.wikidata.org/entity/Q65475. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q65475
DOI: 10.5281/zenodo.8080205
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Bengt Olav Christiansen, http://www.wikidata.org/entity/Q105943570. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q105943570
DOI: 10.5281/zenodo.8080204
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Bengt Olav Christiansen, http://www.wikidata.org/entity/Q105943570. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q105943570
DOI: 10.25442/hku.23210201
title: Supporting data for Mechanisms underlying abnormal inner ear development caused by the <em>Sox9</em><sup><em>Y440X</em></sup> campomelic dysplasia mutation

description: The data are experimental documents generated during the PhD study. It includes sinlge-cell transcriptomic data on E14.5 cochlea and E10.5 otic vesicle on both the wild type and <em>Sox9</em><sup><em>Y440X/+</em></sup> mouse mutant. Confocal and bright-view images were also included. Please refer to the thesis for details regarding the research and information about the experiemntal data.
DOI: 10.25442/hku.23210201.v1
title: Supporting data for Mechanisms underlying abnormal inner ear development caused by the <em>Sox9</em><sup><em>Y440X</em></sup> campomelic dysplasia mutation

description: The data are experimental documents generated during the PhD study. It includes sinlge-cell transcriptomic data on E14.5 cochlea and E10.5 otic vesicle on both the wild type and <em>Sox9</em><sup><em>Y440X/+</em></sup> mouse mutant. Confocal and bright-view images were also included. Please refer to the thesis for details regarding the research and information about the experiemntal data.
DOI: 10.25442/hku.23258990
title: Supporting data for “Flexible Multichannel Neural Probe for Stimulation and Sensing”

description: Miniaturization and minimization of mechanical mismatch in neural probes have been two well-proven directions in suppressing immune response and improving spatial resolution for neuronal stimulations and recordings. While the high impedance brought by the miniaturization of electrodes have been addressed by using conductive polymers coatings in multiple reports, the stiffness of such coatings remains orders of magnitude higher than that of the brain tissue. In this thesis, we aim to tackle the mechanical and electrical issues of the current neural probes in chronic in vivo testing by developing a neural probe that possess simultaneous recordings and stimulation capabilities at multiple sites while maintaining high biocompatibility. We have developed a flat neural probe based on highly flexible microelectrode array neural probe with electrodeposited hydrogel coatings poly(2-hydroxyethyl methacrylate) (pHEMA) and conductive polymer poly(3,4-ethylenedioxythiophene) polystyrene sulfonate (PEDOT/PSS), with a cross-section area at only 300 μm ´ 2.5 μm. Detailed fabrication procedures are described in the thesis. The PEDOT/PSS coating provides a low interfacial impedance, and the pHEMA deposition bridged the mechanical mismatch between the probe and the brain tissues. The two layers of polymers modification enhances the signal-to-noise ratio and allows the microelectrodes array to be engineered for both recording and stimulation purposes. Besides, In vivo testing of microelectrode arrays implanted in rat hippocampus confirmed high signal-to-noise ratio in neural signal recording and excellent charge injection capacity which can effectively induce long term potentiation in neural activities in hippocampus. The chronic testing of the neural probe demonstrated the stability of the probe for long-term implantation. The integration of OECTs into the neural probes on one hand boost the electrical signal sensing capabilities, and also opens up the possibilities of integration of various OECT-based sensors for different sensing applications.
DOI: 10.25442/hku.23258990.v1
title: Supporting data for “Flexible Multichannel Neural Probe for Stimulation and Sensing”

description: Miniaturization and minimization of mechanical mismatch in neural probes have been two well-proven directions in suppressing immune response and improving spatial resolution for neuronal stimulations and recordings. While the high impedance brought by the miniaturization of electrodes have been addressed by using conductive polymers coatings in multiple reports, the stiffness of such coatings remains orders of magnitude higher than that of the brain tissue. In this thesis, we aim to tackle the mechanical and electrical issues of the current neural probes in chronic in vivo testing by developing a neural probe that possess simultaneous recordings and stimulation capabilities at multiple sites while maintaining high biocompatibility. We have developed a flat neural probe based on highly flexible microelectrode array neural probe with electrodeposited hydrogel coatings poly(2-hydroxyethyl methacrylate) (pHEMA) and conductive polymer poly(3,4-ethylenedioxythiophene) polystyrene sulfonate (PEDOT/PSS), with a cross-section area at only 300 μm ´ 2.5 μm. Detailed fabrication procedures are described in the thesis. The PEDOT/PSS coating provides a low interfacial impedance, and the pHEMA deposition bridged the mechanical mismatch between the probe and the brain tissues. The two layers of polymers modification enhances the signal-to-noise ratio and allows the microelectrodes array to be engineered for both recording and stimulation purposes. Besides, In vivo testing of microelectrode arrays implanted in rat hippocampus confirmed high signal-to-noise ratio in neural signal recording and excellent charge injection capacity which can effectively induce long term potentiation in neural activities in hippocampus. The chronic testing of the neural probe demonstrated the stability of the probe for long-term implantation. The integration of OECTs into the neural probes on one hand boost the electrical signal sensing capabilities, and also opens up the possibilities of integration of various OECT-based sensors for different sensing applications.
DOI: 10.25442/hku.23259242
title: <em>Supporting data for “</em><strong>Sleep and Arousal of Survivors of Chronic Childhood Trauma</strong><em>”</em>

description: To investigate the complex relationships among sleep, arousal, and dissociation in childhood trauma survivors, three studies were conducted using samples of community-dwelling adults in Hong Kong. <br> Study 1 examined the differences in subjective sleep quality and sleep-related experiences among individuals exposed to short-term, chronic, and no childhood trauma, and evaluate if the chronicity of trauma altered the relationship between childhood trauma and sleep. Nine-hundred-and-fourteen adults completed an online survey on sleep, trauma-related symptoms, and psychological distress. <br> Study 2 extracted the data from Study 1 and examined the factor structure and psychometric properties of the Chinese version of the Dissociative Experiences Measure, Oxford (HKC-DEMO). <br> Study 3 examined the mediating role of arousal and the moderating role of dissociation in the relationship between childhood trauma and sleep. Fifty survivors of chronic childhood trauma and their age-and-gender-matched controls who reported no history of childhood trauma completed a week of sleep diary and an overnight portable polysomnography assessment. Heart rate variability and skin conductance level were also assessed at baseline and under distress to evaluate autonomic arousal.
DOI: 10.25442/hku.23259242.v1
title: <em>Supporting data for “</em><strong>Sleep and Arousal of Survivors of Chronic Childhood Trauma</strong><em>”</em>

description: To investigate the complex relationships among sleep, arousal, and dissociation in childhood trauma survivors, three studies were conducted using samples of community-dwelling adults in Hong Kong. <br> Study 1 examined the differences in subjective sleep quality and sleep-related experiences among individuals exposed to short-term, chronic, and no childhood trauma, and evaluate if the chronicity of trauma altered the relationship between childhood trauma and sleep. Nine-hundred-and-fourteen adults completed an online survey on sleep, trauma-related symptoms, and psychological distress. <br> Study 2 extracted the data from Study 1 and examined the factor structure and psychometric properties of the Chinese version of the Dissociative Experiences Measure, Oxford (HKC-DEMO). <br> Study 3 examined the mediating role of arousal and the moderating role of dissociation in the relationship between childhood trauma and sleep. Fifty survivors of chronic childhood trauma and their age-and-gender-matched controls who reported no history of childhood trauma completed a week of sleep diary and an overnight portable polysomnography assessment. Heart rate variability and skin conductance level were also assessed at baseline and under distress to evaluate autonomic arousal.