cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3864259_d15
title: Additional file 9: of 
                     Oxalobacter formigenes-associated host features and microbial community structures examined using the American Gut Project

description: Alignment results of 16S rRNA gene V4 region sequence of 13 O. formigenes strains, 3 O. formigenes-associated OTUs, and O. vicrioformis. (TXT 14 kb)
DOI: 10.6084/m9.figshare.c.3864289_d1
title: Additional file 1: Table S1. of The widespread biting midge Culicoides impunctatus (Ceratopogonidae) is susceptible to infection with numerous Haemoproteus (Haemoproteidae) species

description: Morphometric parameters of ookinetes of four Haemoproteus species in the biting midge Culicoides impunctatus. Measurements are given in micrometres. Table S2 Morphometric parameters of oocysts of four Haemoproteus species in the biting midge Culicoides impunctatus. Measurements are given in micrometres. Table S3 Morphometric parameters of sporozoites of four Haemoproteus species in the biting midge Culicoides impunctatus. Measurements are given in micrometres. (XLS 36 kb)
DOI: 10.6084/m9.figshare.c.3864292_d1.v1
title: Additional file 1: of Reference values of fractional excretion of exhaled nitric oxide among non-smokers and current smokers

description: Excel-based FENO calculator. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3864292_d1
title: Additional file 1: of Reference values of fractional excretion of exhaled nitric oxide among non-smokers and current smokers

description: Excel-based FENO calculator. (XLSX 19 kb)
DOI: 10.15468/dl.kmu4t7
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Epigonus constanciae (Giglioli, 1880)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 17 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040318-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3869062_d1.v1
title: Additional file 1 of Endcast: mobile stateless data delivery in MANETs

description: These are.dat files used for plotting graphs using pgfplot package. The commands for plotting are commented inside figure commands as the online editorial manager could not compile the commands. The data file for Fig. 10 (edgeGrow.dat); the data file for Fig. 19 (ReachabilityVsLevel.dat); a data file for Fig. 20 (CA.dat); a data file for Fig. 20 (SNCF.dat); a data file for Fig. 20 (blind.dat); a data file for Fig. 18 (CAUntilEnd.dat); a data file for Fig. 18 (sncfUntilEnd.dat); a data file for Fig. 18 (CApkts.dat); a data file for Fig. 18 (SNCFpkts.dat); a data file for Fig. 22 (CaSRB.dat); a data file for Fig. 22 (SncfSRB.dat); a data file for Fig. 22 (CaSRBnei.dat); a data file for Fig. 22 (SncfSRBnei.dat); a data file for Fig. 23 (ReachTopo.dat); a data file for Fig. 23 (CAReach.dat); a data file for Figs. 24 and 27 (eval.dat); a data file for Fig. 24 (eval-redframes.dat); a data file for Fig. 25 (DelayCAnSNCF.dat); a data file for Fig. 25 (DelayCAnSNCFwithDen.dat); the data file for Fig. 26 (withNwithoutInhib.dat); the data file for Fig. 18 (timeConverge.dat). (ZIP 6 kb)
DOI: 10.6084/m9.figshare.c.3869062_d1
title: Additional file 1 of Endcast: mobile stateless data delivery in MANETs

description: These are.dat files used for plotting graphs using pgfplot package. The commands for plotting are commented inside figure commands as the online editorial manager could not compile the commands. The data file for Fig. 10 (edgeGrow.dat); the data file for Fig. 19 (ReachabilityVsLevel.dat); a data file for Fig. 20 (CA.dat); a data file for Fig. 20 (SNCF.dat); a data file for Fig. 20 (blind.dat); a data file for Fig. 18 (CAUntilEnd.dat); a data file for Fig. 18 (sncfUntilEnd.dat); a data file for Fig. 18 (CApkts.dat); a data file for Fig. 18 (SNCFpkts.dat); a data file for Fig. 22 (CaSRB.dat); a data file for Fig. 22 (SncfSRB.dat); a data file for Fig. 22 (CaSRBnei.dat); a data file for Fig. 22 (SncfSRBnei.dat); a data file for Fig. 23 (ReachTopo.dat); a data file for Fig. 23 (CAReach.dat); a data file for Figs. 24 and 27 (eval.dat); a data file for Fig. 24 (eval-redframes.dat); a data file for Fig. 25 (DelayCAnSNCF.dat); a data file for Fig. 25 (DelayCAnSNCFwithDen.dat); the data file for Fig. 26 (withNwithoutInhib.dat); the data file for Fig. 18 (timeConverge.dat). (ZIP 6 kb)
DOI: 10.6084/m9.figshare.c.3870535_d1.v1
title: Additional file 1: Table S1. of Mapping insecticide resistance and characterization of resistance mechanisms in Anopheles arabiensis (Diptera: Culicidae) in Ethiopia

description: Program and output of statistical analysis. (R 6Â kb)
DOI: 10.6084/m9.figshare.c.3870661_d2
title: Additional file 2: Table S11. of Genomic regions and pathways associated with gastrointestinal parasites resistance in Santa Inês breed adapted to tropical climate

description: KEGG pathways (P
DOI: 10.6084/m9.figshare.c.3870676_d2.v1
title: Additional file 1: of Enrichment of beneficial bacteria in the skin microbiota of bats persisting with white-nose syndrome

description: Clusters of bats sampled within each hibernaculum and coded as dummy variables for db-RDA analysis.
DOI: 10.6084/m9.figshare.c.3870676_d2
title: Additional file 1: of Enrichment of beneficial bacteria in the skin microbiota of bats persisting with white-nose syndrome

description: Clusters of bats sampled within each hibernaculum and coded as dummy variables for db-RDA analysis.
DOI: 10.6084/m9.figshare.c.3870697_d1.v1
title: Additional file 1: Table S1. of Evolution of mobile genetic element composition in an epidemic methicillin-resistant Staphylococcus aureus: temporal changes correlated with frequent loss and gain events

description: Summary of isolates analysed in this study. (XLSX 99 kb)
DOI: 10.6084/m9.figshare.c.3870697_d1
title: Additional file 1: Table S1. of Evolution of mobile genetic element composition in an epidemic methicillin-resistant Staphylococcus aureus: temporal changes correlated with frequent loss and gain events

description: Summary of isolates analysed in this study. (XLSX 99 kb)
DOI: 10.6084/m9.figshare.c.3870676_d3.v1
title: Additional file 2: of Enrichment of beneficial bacteria in the skin microbiota of bats persisting with white-nose syndrome

description: Positive control mock community analysis. Sequence set comparisons of the mock community to what is expected. File 1 shows the matching sequences and related taxa identified. File 2 shows the taxa composition of the mock in relative abundance, the matching taxa at the genus or family level, and the false positive taxa.
DOI: 10.6084/m9.figshare.c.3870676_d3
title: Additional file 2: of Enrichment of beneficial bacteria in the skin microbiota of bats persisting with white-nose syndrome

description: Positive control mock community analysis. Sequence set comparisons of the mock community to what is expected. File 1 shows the matching sequences and related taxa identified. File 2 shows the taxa composition of the mock in relative abundance, the matching taxa at the genus or family level, and the false positive taxa.
DOI: 10.6084/m9.figshare.c.3870709_d1.v1
title: Additional file 10: Table S7b. of Chromosome contacts in activated T cells identify autoimmune disease candidate genes

description: As above, complete results. (GZ 37 kb)
DOI: 10.15468/dl.tw6gsm
title: Occurrence Download

description: A dataset containing 631 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Epigonus denticulatus Dieuzeide, 1950",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 631 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040319-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3870709_d1
title: Additional file 10: Table S7b. of Chromosome contacts in activated T cells identify autoimmune disease candidate genes

description: As above, complete results. (GZ 37 kb)
DOI: 10.6084/m9.figshare.c.3870796_d3.v1
title: Additional file 3: Table S3. of Generation of expressed sequence tags for discovery of genes responsible for floral traits of Chrysanthemum morifolium by next-generation sequencing technology

description: Gene accessions used in the phylogenetic tree of CCD4 proteins. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3872017_d4
title: Additional file 4: Table S2. of Thioester-containing proteins regulate the Toll pathway and play a role in Drosophila defence against microbial pathogens and parasitoid wasps

description: Additional file containing raw data generated in this study. (XLSX 40 kb)
DOI: 10.6084/m9.figshare.c.3872038_d1.v1
title: Additional file 1: Supplementary Tables. of Patterns of host gene expression associated with harboring a foregut microbial community

description: Table S1: Excluded GENCODE vM7 mouse genes. Table S2: EdgeR differential expression (N. stephensi versus R. norvegicus). Table S3: Read counts from GENCODE vM7 map and count pipeline: M. musculus smooth muscle versus N. stephensi and R. norvegicus foregut. Table S4: EdgeR differential expression (N. stephensi versus R. norvegicus); non-smooth muscle genes, FDR
DOI: 10.6084/m9.figshare.c.3872038_d1
title: Additional file 1: Supplementary Tables. of Patterns of host gene expression associated with harboring a foregut microbial community

description: Table S1: Excluded GENCODE vM7 mouse genes. Table S2: EdgeR differential expression (N. stephensi versus R. norvegicus). Table S3: Read counts from GENCODE vM7 map and count pipeline: M. musculus smooth muscle versus N. stephensi and R. norvegicus foregut. Table S4: EdgeR differential expression (N. stephensi versus R. norvegicus); non-smooth muscle genes, FDR
DOI: 10.6084/m9.figshare.c.3872044_d1.v1
title: Additional file 10: Table ST5. of Dual transcriptome of the immediate neutrophil and Candida albicans interplay

description: Differential regulation of arginine metabolism genes in C. albicans. DEGs involved in arginine metabolism of yeast and hypha C. albicans infecting neutrophils and NETs are displayed. The transcript level is indicated by fold change (log2). (XLS 41 kb)
DOI: 10.5281/zenodo.10929250
title: Bioactivity of small-molecule compounds against Haemonchus contortus

description: This dataset of small-molecule compounds and their effects on H. contortus was assembled based on the results obtained from screening two compound libraries (Medicines for Malaria Venture Pathogen Box, Compounds Australia Open Scaffolds set) to assess the effect of compounds on the motility of exsheathed third-stage larvae (xL3) of H. contortus (Preston et al., 2016, 2017). Additionally, select literature data were included to augment the in-house generated data.
DOI: 10.5066/p9bjp7ov
title: LANDFIRE 2023 (240) Update

description: The LANDFIRE 2023 Update (LF 2023) product suite represents the final step in the ongoing goal to move towards annual updates and reduced latency. LANDFIRE'S goal has been to release an annual update every year that represents one year, specifically the previous year. Similar to the LF 2022 Update, in LF 2023, disturbances from the previous year are represented in current year products. However, LF 2023 marks the first version where only the past year is represented. Whereas LF 2022 included 2 years of disturbance (2021 and 2022) the LF 2023 Update includes only one year of disturbance (2023).

Improvements Featured in the LF 2023 Update:
The use of 4 seasonal composites in disturbance mapping, doubling LANDFIRE’s use of satellite imagery
Mapped disturbance events in the 90km buffer area surrounding the Conterminous United States (CONUS)
Two new types of Annual Disturbance products – Limited and Preliminary Annual Disturbance
New fuels calibration for the Southeast GeoArea, Colorado, and Oklahoma
An updated Operational Roads product for CONUS that incorporates National Land Cover Database (NLCD) 2021
The return of Fire Regime Group (FRG), Fire Return Interval (FRI), and Percent Fire Severity (PFS) as standalone products – no longer nested within the Biophysical Setting (BPS) product
An updated BPS product for AK
An updated Fuel Characteristics Classification System (FCCS) product for all extents
A new methodology update for Existing Vegetation Cover (EVC), Height (EVH), and Type (EVT) products within CONUS
In the past LANDFIRE updates have used millions of rulesets developed from local and national experts across the United States to update mapped vegetation where disturbance has occurred. These rulesets considered the initial vegetation type, cover, and height and applied a transition rule using the disturbance type, severity, and length of time since the disturbance occurred to produce an updated EVT, EVC, and EVH products for a new version.

Since circa LF 2016 Remap (LF Remap), these rules have required to Remap inputs of EVT, EVC, and EVH. This created challenges for the update process because areas that had been disturbed in the few years prior to 2016 remained unchanged from that snapshot in time.

For LF 2023, LANDFIRE will map the lifeform, cover, and height of existing vegetation in areas that LANDFIRE has mapped as disturbed over the last twenty years (see the LANDFIRE Annual Disturbance product) using our machine learning methods. LANDFIRE focused on updating areas disturbed over the last 20 years since these are the areas that have most likely changed the most.
DOI: 10.15468/dl.djgby6
title: Occurrence Download

description: A dataset containing 1665 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Epigonus telescopus (Risso, 1810)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1665 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040320-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3877129_d1.v1
title: Additional file 1: of Predicted networks of protein-protein interactions in Stegodyphus mimosarum by cross-species comparisons

description: Predicted PPI proteins in S. mimosarum. Sheet 1: Predicted PPI proteins in S. mimosarum; Sheet 2: Predicted PPIs in S. mimosarum; Sheet 3: Predicted PPIs of S. mimosarum from PPI orthologs in D. melanogaster; Sheet 4: Predicted PPIs of S. mimosarum from PPI orthologs in H. sapiens; Sheet 5: Predicted PPIs of S. mimosarum from PPI orthologs in S. cerevisiae. (XLSX 5485Â kb)
DOI: 10.6084/m9.figshare.c.3879502_d2
title: MOESM2 of Phenotypic landscape of non-conventional yeast species for different stress tolerance traits desirable in bioethanol fermentation

description: Additional file 2:Â Table S2. Source, geographical origin and details of stress tolerance characteristics of yeast strains used in this study.
DOI: 10.6084/m9.figshare.c.3881320_d1.v1
title: Additional file 1: of Virtual patients in the acquisition of clinical reasoning skills: does presentation mode matter? A quasi-randomized controlled trial

description: Raw dataset (XLSX 26 KB).
DOI: 10.6084/m9.figshare.c.3881317_d1.v1
title: Additional file 1: of Season, but not symbiont state, drives microbiome structure in the temperate coral Astrangia poculata

description: Two-way ANOVA demonstrating that both seasonal time point and symbiotic state affect Symbiodinium density. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3881317_d1
title: Additional file 1: of Season, but not symbiont state, drives microbiome structure in the temperate coral Astrangia poculata

description: Two-way ANOVA demonstrating that both seasonal time point and symbiotic state affect Symbiodinium density. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3881320_d1
title: Additional file 1: of Virtual patients in the acquisition of clinical reasoning skills: does presentation mode matter? A quasi-randomized controlled trial

description: Raw dataset (XLSX 26 KB).
DOI: 10.6084/m9.figshare.c.3882709_d5.v1
title: Additional file 5: Table S5. of Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor

description: List and expression level of TF-encoding genes significantly up or downregulated in various mutualistic interaction (expression ratio &gt; 2.5 folds and FDR or BH modified t-test
DOI: 10.15468/dl.27t3e2
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Epinephelus drummondhayi Goode & Bean, 1878",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 10 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040321-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3882709_d5
title: Additional file 5: Table S5. of Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor

description: List and expression level of TF-encoding genes significantly up or downregulated in various mutualistic interaction (expression ratio &gt; 2.5 folds and FDR or BH modified t-test
DOI: 10.6084/m9.figshare.c.3882709_d6.v1
title: Additional file 6: Table S6. of Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor

description: List of L. bicolor “core” TF orthologues genes in ECM fungi (A. muscaria; H. cylindrosporum; P. involutus, P. croceum, S. luteus, C. geophilum and T. melanospsorum). The shaded rows indicate orthologues (using Reciprocal Blast Hit) of L. bicolor TFs, which are up or downregulated in symbiotic tissues. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3882709_d6
title: Additional file 6: Table S6. of Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor

description: List of L. bicolor “core” TF orthologues genes in ECM fungi (A. muscaria; H. cylindrosporum; P. involutus, P. croceum, S. luteus, C. geophilum and T. melanospsorum). The shaded rows indicate orthologues (using Reciprocal Blast Hit) of L. bicolor TFs, which are up or downregulated in symbiotic tissues. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3882709_d7.v1
title: Additional file 7: Table S7. of Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor

description: List of P. trichocarpa TFs, unconventional activators and putative unconventional activators retrieved from, and functionally validated by, the TAT screen of ECM and Roots libraries. For each gene, additional information (e.g. number of clones retrieved, name and other characteristics of the most informative best hit obtained from a BLASTX search carried out in GenBank, IPR domain if any) is reported. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.c.3882709_d8.v1
title: Additional file 8: Table S8. of Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor

description: List and sequences of primers used for qPCR. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3882709_d7
title: Additional file 7: Table S7. of Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor

description: List of P. trichocarpa TFs, unconventional activators and putative unconventional activators retrieved from, and functionally validated by, the TAT screen of ECM and Roots libraries. For each gene, additional information (e.g. number of clones retrieved, name and other characteristics of the most informative best hit obtained from a BLASTX search carried out in GenBank, IPR domain if any) is reported. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.c.3882709_d8
title: Additional file 8: Table S8. of Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor

description: List and sequences of primers used for qPCR. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3884017_d4.v1
title: Additional file 4: of A systematic review and integrative approach to decode the common molecular link between levodopa response and Parkinsonâ  s disease

description: GWAS studies on Parkinsonâ  s disease genetics. (XLS 92 kb)
DOI: 10.6084/m9.figshare.c.3884017_d4
title: Additional file 4: of A systematic review and integrative approach to decode the common molecular link between levodopa response and Parkinsonâ  s disease

description: GWAS studies on Parkinsonâ  s disease genetics. (XLS 92 kb)
DOI: 10.6084/m9.figshare.c.3884017_d5.v1
title: Additional file 5: of A systematic review and integrative approach to decode the common molecular link between levodopa response and Parkinsonâ  s disease

description: Functional enrichment analysis (by WebGestalt) result for each enriched function obtained using levodopa response associated genes. (XLS 48 kb)
DOI: 10.6084/m9.figshare.c.3884017_d5
title: Additional file 5: of A systematic review and integrative approach to decode the common molecular link between levodopa response and Parkinsonâ  s disease

description: Functional enrichment analysis (by WebGestalt) result for each enriched function obtained using levodopa response associated genes. (XLS 48 kb)
DOI: 10.6084/m9.figshare.c.3884017_d6.v1
title: Additional file 6: of A systematic review and integrative approach to decode the common molecular link between levodopa response and Parkinsonâ  s disease

description: Functional enrichment analysis (by WebGestalt) result for each enriched function obtained using Parkinsonâ  s disease associated genes. (XLS 52 kb)
DOI: 10.6084/m9.figshare.c.3886555_d5
title: MOESM2 of Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

description: Additional file 2. List of predicted genes coding for carbohydrate-active enzymes (CAZY) in N. crassa and the plant cell wall degradation network (PCWDN). List of CAZY genes in N. crassa was obtained from two sources: CAZY database [41] and the N. crassa e-Compendium [42]. The first sheet contains the consensus list of predicted CAZY genes in N. crassa. The second sheet contains the list of predicted CAZY genes in N. crassa from CAZY database. The third sheet contains the list of predicted glycoside hydrolase (GH) genes in N. crassa from e-Compendium [42]. The fourth sheet contains the list of CAZY classes known to be involved in native cell wall remodelling. NoC no carbon, CB cellobiose, XG xyloglucan, MLG mixed-linkage glucan, OPP orange peel powder.