cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1287677.v1
title: Pollinator diversity and composition

description: Primary data for the paper: Lundgren, Lázaro and Totland "Effects of experimentally simulated pollinator decline on recruitment in two European herbs". Journal of Ecology, accepted January 2015. Visitation rates and pollinator diversity and richness over three years to Centaurea jacea and Leucanthemum vulgare. Compares plots of 1x1 m with natural pollinator densities (C) with pollinator densities to experimentally manipulated plots (E).
DOI: 10.6084/m9.figshare.12978275.v3
title: 1000 random numbers

description: 1000 random numbers ranged from 1 to 100
DOI: 10.6084/m9.figshare.22080680.v1
title: Mapping File - Chalifour et al., MSystems, Gut Microbiome Biogeography

description: Mapping file that corresponds to ASV table generated as part of Chalifour et al., MSystems publication of biogeographic-driven changes in the <em>Oreohelix strigosa</em> gut microbiome.
DOI: 10.6084/m9.figshare.25907815.v1
title: Complete bacteriophage genomes containing simulated mutations

description: These files are associated with the publication "Ultrafast and accurate sequence alignment and clustering of viral genomes".phage-genomes_simulated_mutations.csv the expected (true) total ANI (tANI) values in the 70-100% range, derived from 10,000 pairs of bacteriophage genomes subjected to simulated mutations, including different levels of substitution, insertion, deletion, duplication, inversion, and translocation events. Mutations were introduced using Mutation-Simulator v3.0.2.Column descriptions:sample: sample IDref_id: Reference genome IDalt_id: Altered reference IDtotal_ani: True total ANI [%]ref_length: Reference genome lengthalt_length: Altered reference genome lengthsn: Substitions frequencyde: Deletions frequencyins: Insertions frequencydu: Duplications frequencyinv: Inversions frequencytl: Translocations frequencyn_sn: Substituted nucleotidesn_de: Deleted nucleotidesn_ins: Inserted nucleotidesn_du: Duplicated nucleotidesn_inv: Inverted nucleotidesn_tl: Translocated nucleotides2. phage-genomes_simulated_mutations.fnanucleotide sequences of reference and altered genomes.<br>
DOI: 10.6084/m9.figshare.28735763.v1
title: Happiness Dataset

description: Happiness datatset
DOI: 10.17632/zggpmvmz9m
title: Dynamic Dataset

description: Datasets to work on Dynamic networks for Link Prediction, Community Detection
DOI: 10.6084/m9.figshare.14768985.v1
title: Supplementary Material for: Cystic Duct Leakage as Visualized by Novel Digital Single-Operator Cholangioscopy (with Video)

description: Medicine
DOI: 10.6084/m9.figshare.23735370.v1
title: Supplementary Material for: Impact of ‘Black Race’ Coefficient in eGFR on Our Community and Medical Education

description: Introduction: The use of race in estimation of glomerular filtration rate (eGFR) started a critical national conversation on numerous areas of medicine touched by racism; with a call for removal of race from calculation of eGFR. We scrutinized use of ‘Black race’ coefficient in MDRD eGFR calculation and consequence of its use on our local community in SW Michigan. Methods: A cross-sectional analysis of de-identified electronic health record (EHR) data from routine outpatient primary care visits, from 1/1/2019 to 12/31/2019 included variables such as age, race, gender, serum creatinine levels and calculated eGFRs (if any), using Chi-square tests for association and Wald-approximation 95% confidence interval. During the data collection period in 2019, both hospital systems and the outpatient clinic site were all using MDRD. Results: eGFR and associated CKD stage were calculated for 131,863 patients. Chi-square tests found significant differences in rates of CKD stages 3,4 and 5 between ‘Black’ and ‘not Black’. And, the 95% confidence interval for the proportion of Black patients who would advance to the next stage of CKD upon ignoring ‘Black race’ (using Wald-approximated Confidence Interval for binomial proportion) is between 41.1% and 43.0%. Discussion: The eGFR calculations which place Black patients in lower CKD stages initially may deprive them of important treatment and referral early in their disease course. Removal of the Black race coefficient allows for referral to a nephrologist, Medicare coverage, and the potential need for transplant and/or dialysis. Conclusion: Our analysis demonstrates the impact removal of ‘black race’ coefficient from MDRD eGFR calculation could have on our community.
DOI: 10.6084/m9.figshare.24173910.v1
title: Simulation Data for HGWR

description: A spatial data set of 21,434 random samples was generated, spreading evenly across 625 locations, u_i=(u_i, v_i ) (i=1,2,⋯,625). The data-generating process was inspired by that used by Fotheringham et al. (2017). For each data point, four independent variables (g_1,g_2,x_1,z_1) were generated according to a multivariate normal distribution with zero means and an identity variance-covariance matrix. However, the mean of g_1 and g_2 at each location were substituted for the original values to simulate group-level spatial-related variables. Among them, x_1 and z_1 were regarded as sample-level variables. Samples located together share coefficient values.
DOI: 10.6084/m9.figshare.7996352.v1
title: Digital design of eating disorder treatments: A systematic review and meta-analysis

description: The current review and meta-analysis aimed to determine which components of web-based interventions are associated with higher attrition and improved therapeutic outcome in eating disorder treatment. A systematic of electronic databases were searched for published studies of web-based interventions for eating disorders and a meta-analysis of the final included studies was conducted. Each intervention was coded across four dimensions including multimedia channels, automated feedback, and technological device. A final 23 studies were included in the review. The results of meta-regressions indicated that higher scores on the multimedia subscale were associated with greater eating disorder symptom improvement in treatment groups. Conversely, higher scores on the feedback subscale were associated with greater reductions in eating disorder psychopathology in the control group. Other intervention components were not associated with treatment outcome or dropout. <br>
DOI: 10.17632/nwr9vt429s
title: Dataset: Evaluation of a servant leadership intervention

description: Purpose: The aim of this study was to evaluate the effectiveness of a servant leadership development intervention in the construction industry.  
Research method: A one group pre-test and post-test experimental design was applied to evaluate servant leadership behaviour before and after a servant leadership intervention. A sample of 44 managers was drawn from the construction industry in South Africa. 
Findings: The results showed that the servant leadership intervention significantly enhanced servant leadership behaviour, particularly in terms of empowerment, stewardship, and forgiveness. Managers that participated in the servant leadership intervention showed more servant leadership behaviour after the intervention in terms of empowerment, stewardship, and forgiving behaviour. 
Managerial implications: The servant leadership intervention evaluated by this study can be used as an effective method to enhance servant leadership behaviour and to cultivate servant leadership cultures within construction organisations. In return, construction organisations can benefit from the favourable individual and organisational outcomes that servant leadership offers.
DOI: 10.6084/m9.figshare.26524771.v3
title: Processed data from O'Brien et al. (2024) <i>Journal of Applied Ecology </i>https://doi.org/10.1111/1365-2664.14764

description: All inputs to run models from O'Brien et al. (2024) <i>Journal of Applied Ecology</i>. https://doi.org/10.1111/1365-2664.14764
DOI: 10.6084/m9.figshare.28338206.v1
title: 中国习 COVID-19 大流行前、期间和之后住院儿童肺炎支原体的流行病学特征

description: 肺炎支原体 肺炎 （MP） 是全球范围内引起社区获得性肺炎 （CAP） 的常见病原体<sup>[1]。</sup> MP 感染占儿童肺炎相关住院人数的 10-40%<sup>[2， 3]。</sup>.儿童和青少年中尤其危险，他们的发病率和死亡率都很高<sup>[4]。</sup>. 在大多数情况下，MP 感染可独立消退。然而，它们可导致持续性肺炎和肺外损伤，导致严重的并发症，甚至导致h<sup>[5]。</sup>. 因此，儿童发生 MP 感染，发病率和死亡率也很高<sup>[6]。</sup>.MP 是自我复制的原核微生物，主要通过呼吸道飞沫和密切接触传播<sup>[7]。</sup>与其他病原体相比，它是非典型的，原因有多种<sup>[8]。</sup>它是最小的自我复制生物之一。它具有减少且稳定的基因组 （0.8 Mbp），缺乏细胞壁，生长缓慢（生成时间为 6 小时），并且需要密切接触才能传播<sup>[9]。</sup>此外，它还会诱发非典型肺炎，这可能涉及宿主细胞介导的免疫<sup>[10]。</sup>潜伏期为一到三周，个体从症状出现到康复后数周都能够保持传染<sup>性[11]。</sup>.MP 感染可发生在任何季节，高峰每隔几年出现<sup>一次[12]。</sup>这些感染 是 在中国北方的秋季和冬季更常见，而在中国南方的夏季和秋季更为普遍<sup>[11]。</sup>自 冠状病毒病 （2019 年 12 月冠状病毒病 （COVID-19） 出现以来，已经实施了非药物干预措施 （NPI），例如佩戴口罩、保持手部卫生和保持社交距离，以控制 SARS-CoV-2 的传播<sup>[6]。</sup>尽管这些措施有效地减少了 SARS-CoV-2 的传播，但它们也降低了y 艾德 MP 检出率，从根本上破坏 了先前建立的流行病学趋势<sup>[5]。</sup>与其他呼吸道病原体类似，引入 NPI 后，儿童 MP 感染的发生率立即显着降低<sup>[8]。</sup>. 然而，随着大流行限制措施的解除，MP 感染的发生率显着增加<sup>[13]</sup>，引起了广泛关注，值得进一步调查。然而，关于中国 COVID-19 大流行各个阶段 MP 感染的长期流行病学特征的信息仍然s很少。本回顾性研究旨在分析 2017 年 1 月 1 日至 2023 年 12 月 31 日习安住院儿童在大流行前、 大流行和大流行后阶段
DOI: 10.6084/m9.figshare.28877192.v1
title: Data for "Saturation hysteresis during cyclic injections of immiscible fluids in porous media: an invasion percolation study"

description: The data contains the algorithms for generating the data of fluid-fluid displacement processes in porous media.<b>ModifiedInvasionPercolation_cyclic.rar</b>: the modified invasion percolation algorithm for simulating cyclic immiscible displacement processes. Trapping is by default enabled. The run-time pore filling pressure is updated according to the pore coupling coefficient.<i>Run demo_1stInjection.m and then </i><i>demo_2ndInjection.m for a demonstration. More cycles can be simulated by alternately calling these two functions.</i><b>ITA_multiphase-main.rar</b>: This interface tracking algorithm (ITA) simulates immiscible fluid-fluid displacement processes in two-dimensional porous media in the quasi-static (capillary-dominated) regime under different wetting conditions (controlled by the contact angle).<i>Run "main_demo.m" for a demonstration.</i>For more details, please refer to the manuscript "Saturation hysteresis during cyclic injections of immiscible fluids in porous media: an invasion percolation study".The pore-resolved interface tracking algorithm is also available at https://github.com/spoonacular/ITA_multiphase. Please consider also citing the following article if you find it useful.Wang, Z., Pereira, J.-M., Sauret, E., Aryana, S. A., Shi, Z., & Gan, Y. (2022, February 26). A pore-resolved interface tracking algorithm for simulating multiphase flow in arbitrarily structured porous media. Advances in Water Resources. Retrieved May 11, 2022, from https://www.sciencedirect.com/science/article/pii/S030917082200029X
DOI: 10.17632/8ysxtyf8p2
title: RecBov51c

description: Image Dataset with 51 classes the Pantaneiro Cattle.
The images in the dataset were collected between 1:50pm and 4:48pm on January 25, 2019 at the Aquidauana Pantanal Cattle Conservation Center (NUBOPAN) in the State University of Mato Grosso do Sul/Aquidauana University Unit (UEMS/UUA). This is located in the municipality of Aquidauan/MS which is in the Pantanal region of Mato Grosso do Sul. The geographical coordinates were as follows: latitude 20º28' S, longitude 55º48' W and an altitude of 149 meters.
In this study, 51 Pantanal cattle units of both sexes and various ages were used. This is equivalent to 10% of the existing population for this breed. Images were collected using the Digital Video Recorder (DVR) set MIDI MD-1004NS MD-DVR41. The image quality was AHD 720p and the recording capacity was 1Tb. Four cameras were positioned at the exit outlet to collect images of the back, profile, side, and face. Images of the cattle’s backs were collected using camera 1. This was positioned approximately 2.5 meters high with an inclination angle of 30º. The other cameras were positioned according to the sketch at the same height as the pickets.
The videos collected were stored in the DVR, transferred to computers, analyzed, and divided into 212 smaller videos. Images of the cattle were then extracted from these videos. The dataset was formed using 27,849 images of Pantanal cattle and the number of images obtained varied according to filming to time of each cattle.
DOI: 10.17632/bdgdmmcsjn
title: Data for: On the evaluation of soil erosion models: are we doing enough?

description: This dataset includes a R script for applying the Generalized Likelihood Uncertainty Estimation (GLUE) for the revised Morgan-Morgan-Finey model (MMF) at plot scale. The code incorporates Nearing’s criteria for defining limits of acceptability for model error within the GLUE methodology. Input data for the uncertainty estimation method and the model application are provided. The dataset also includes the raw data used for the meta-analysis on the performance of soil erosion models at plot scale and the raw data used for the term co-occurrence analysis. Map and network files for plotting this analysis in VOSviewer are also supplied. Detailed descriptions of the methods and analyses are provided in the text.
DOI: 10.6084/m9.figshare.11741700.v1
title: Method Development Data.xlsx

description: Data associated with the method development for detection of pmp-glucose by HPLC
DOI: 10.6084/m9.figshare.14526609.v2
title: finite element mesh

description: The finite element mesh in ascii format for the Cascadia model and a sample Fortran code to read the mesh<br>
DOI: 10.6084/m9.figshare.21128224.v2
title: Top-view videos

description: The top-down video dataset is created using the downward pointing camera of the simulator program. This data set is generated using the Coppelia Sim video recording feature. The captured videos are coloured frames of size 720x1280. These videos are converted to grey scale (single channel). Then they are compressed to 240x320 resolution to facilitate the proposed computations in a feasible time. The final size of the dataset is 493, 5-second (75 frame) videos for structured and random behaviours.
DOI: 10.6084/m9.figshare.29087423.v6
title: Major Analysis Workflows for Craniopharyngioma scRNA-seq and Spatial Transcriptomics

description: related scripts
DOI: 10.6084/m9.figshare.5620846.v1
title: Kill site database from Characterization of puma–livestock conflicts in rangelands of central Argentina

description: Database of the kill sites of livestock predated by pumas in the study area.
DOI: 10.6084/m9.figshare.6291092.v1
title: 2017 04 10 Field Notes and Comparison of Video

description: Field notes including image and/or video records. The primary objective of this field visit was to obtain a nearly exact reference video for the 20 September 2014 observation of multiple animals. Selected frames showing the three animals visible in the original video are compared to frames showing an adult male human in the same exact location, or at a relevant distance from the camera, in the reference video.<br>Project order 81a
DOI: 10.6084/m9.figshare.16556658.v1
title: patent_meta.tsv

description: Metadata from patent nanobodies
DOI: 10.6084/m9.figshare.4924820
title: Geology of Piemonte region (NW Italy, Alps–Apennines interference zone)

description: The geological map of Piemonte Region (Italy) is a graphic representation of the geology of the region, grounded on a large geodatabase, that can be also browsed as an interactive scalable map (GeoPiemonte Map) using a WebGIS application. The Map, produced at 1:250,000 scale, is the first original release of the ‘GeoPiemonte Map’ project. The geological data represented on the map derive from a thorough revision of available geological maps and literature, integrated with unpublished original data. The revision and harmonisation of existing and new data have been based on explicit criteria used for the classification of geologic units and their representation on the Map. These criteria firstly aimed at providing a lithostratigraphic, hierarchic subdivision of Piemonte geologic units and describing them using shared concepts and vocabularies, consistent with IUGS Descriptive Standards for the Geosciences.
DOI: 10.6084/m9.figshare.12482345.v17
title: Arsenic, Bacteria, Copper, Lead, Nitrate, Sulfate, Chloride & Total Hardness Data by Section, Town-Range and/or County, Center for Watershed Science and Education, Univ of Wisconsin-Stevens Point/Univ of Wisconsin-Madison Division of Extension, Stevens Point, WI

description: Arsenic, Bacteria, Copper, Lead, Nitrate, Sulfate, Chloride and Total Hardness data for private wells collected in the Wisconsin area. The data provides the average of nitrate(mg/L), chloride (mg/L), total hardness (mg/L) per Section, Town-Range and/or County in the state of Wisconsin. Center for Watershed Science and Education, Univ of Wisconsin-Stevens Point/Univ of Wisconsin-Madison Division of Extension, Stevens Point, WI.
DOI: 10.6084/m9.figshare.12576875.v1
title: PSST-103817 Supplementary Data

description: Langmuir probe data and VNA data that supplement the manuscript: "Tunable Reflectionless Absorption of Electromagnetic Waves in a Plasma-Metamaterial Composite Structure" by Nolan Uchizono, Stephen Samples, and Richard Wirz. The manuscript was submitted to Plasma Sources Science and Technology, submission number PSST-103817.
DOI: 10.6084/m9.figshare.13682830.v1
title: Matrix training w + w/out IF

description: GraphPad data file for matrix training with and without instructive feedback study.
DOI: 10.6084/m9.figshare.1544294.v1
title: Extracting DICOM header data for CTReconSim

description: This file has been superceded by PrecisionCalculator<br>This file shows how to get the orientation data from a DICOM header. An ImageJ macro is included (you will need to copy this to a text file and include it in ImageJ) Sample data is shown, demonstrating calculation of the missing axis component values and derivation of spin and tilt from these.
DOI: 10.6084/m9.figshare.20166371.v1
title: Wavelengths

description: 40002 resolved wavelength values (identical to the ones found in the training and testing datasets' header row).
DOI: 10.6084/m9.figshare.20424924.v1
title: Plotly.plus

description: Visualization recommendation is a novel and challenging field of study, whose aim is to provide non-expert users with automatic tools for insight discovery from data. Advances in this research area are hindered by the absence of reliable datasets on which to train the recommender systems. To the best of our knowledge, Plotly is the only publicly available dataset, but as complained by many authors and discussed in this article, it contains many labeling errors, which greatly limits its usefulness. We release an improved version of the original dataset, named Plotly.plus, which we obtained through an automated procedure with minimal post-editing. In addition to a manual validation by a group of data science students, we demonstrate that when training two basic classifiers on Plotly.plus, systems’ performance improves more than twice as much as when the original dataset is used, thus proving that models are able to find more regularities in the data.
DOI: 10.6084/m9.figshare.21836049.v1
title: Raw data extracted from the videos of wolves and jackals feeding simultaneously on a carcass in Maharashtra (India)

description: Raw data extracted from the videos of wolves and jackals feeding simultaneously on a carcass in Maharashtra (India). A legend is included in the archive.
DOI: 10.17632/4b65hzcpys
title: Comprehensive national-level technology adoption dataset (1720-2022)

description: Dataset Summary: 

This collection presents a comprehensive dataset on global technology adoption and diffusion, meticulously compiled to enhance the understanding of technological spread over time and across different regions. It includes detailed records of technology adoption levels alongside extensive metadata, making it an invaluable resource for a wide range of analyses including technological impact assessment, diffusion pattern studies, and sector-specific technological advancements. The dataset spans 292 territories from 1720-2022.

Data Files:

TechnologyDataFull.csv: Captures technology adoption across various countries, organized in a long format representing different technologies. The dataset extends from historical to recent times allowing for an analysis of trends and patterns in technology uptake. This dataset is key for longitudinal studies of technology adoption.

TechnologyMetadata.csv: Complements the adoption data by providing contextual and detailed descriptive information on each technology. Key details include a common name (Tech_Name), a more detailed variant (Detailed_Tech_Name), sector affiliation, and the invention details (year and country), along with a unique identifier (Variable_ID) for each technology. 

Technology_Data_Description.pdf: A descriptive document that provides an exhaustive overview of the datasets’ contents and structure. It details the data sources, the integration and normalization methods used to compile the datasets, and discusses the methodologies employed to ensure data accuracy and relevance.

Key Features:

- Detailed technological adoption data across a diverse array of global regions.
- Rich metadata that supports deeper analytical pursuits into technology diffusion.
- Documentation that outlines the datasets' compilation from 32 distinct international technology tracking initiatives for enhanced spatial and temporal coverage.

This dataset is designed to address spatial and temporal deficiencies found in previous compilations, thereby providing a more accurate representation of global technology distribution. It is suitable for researchers interested in the dynamics of technology diffusion, policy-making in technology governance, and strategic planning in technology development and deployment.
DOI: 10.6084/m9.figshare.1579605.v1
title: Genome-wide analysis of microsatellite markers based on the sequenced database of Chinese spring wheat (Triticum aestivum L.)

description: Microsatellites or simple sequence repeats (SSRs) are distributed across both prokaryotic and eukaryotic genomes and have been widely used for genetic studies and molecular marker assisted breeding of crops. Although a draft sequence for hexaploid bread wheat is available, to date, there is no published systemic analysis of SSRs in wheat. In the present study, we identified 364,347 SSRs from among 10,603,760 sequences of the Chinese spring wheat (CSW) genome, which were present at a density of 36.68 SSR/Mb. In total, we detected 488 types of motifs ranging from di- to hexanucleotides, among which dinucleotide repeats dominated, accounting for approximately 42.52% of the genome. The density of tri- to hexanucleotide repeats was 24.97%, 4.62%, 3.25% and 24.65%, respectively. AG/CT, AAG/CTT, AGAT/ATCT, AAAAG/CTTTT and AAAATT/AATTTT were the most frequent repeats among di- to hexanucleotide repeats. Among the 21 chromosomes of CSW, the density of repeats was highest on chromosome 2D and lowest on chromosome 3A. The proportions of di-, tri-, tetra-, penta- and hexanucleotide repeats on each chromosome, and even on the whole genome, were almost identical. In addition, 295,267 SSR markers were successfully developed from the 21 chromosomes of CSW, which cover the entire genome at a density of 29.73 per Mb. All of the SSR markers were validated by reverse electronic-Polymerase Chain Reaction (re-PCR); 70,564 (23.9%) were found to be monomorphic and 224,703 (76.1%) were found to be polymorphic. A total of 45 monomorphic markers were selected randomly for validation purposes; 24 (53.3%) amplified one locus, 8 (17.8%) amplified multiple identical loci, and 13 (28.9%) did not amplify any fragments from the genomic DNA of CSW. Then a dendrogram was generated based on the 24 monomorphic SSR markers among 20 wheat cultivars and three species of its diploid ancestors showing that monomorphic SSR markers represented a promising source to increase the number of genetic markers available for the wheat genome. The results of this study will be useful for investigating the genetic diversity and evolution of wheat and related species. At the same time, the results will facilitate comparative genomic studies and marker-assisted breeding (MAS) in plants.