cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/pd93m3c4rz
title: PV DC Series Arc Simulation Data

description: Solar photovoltaic (PV) systems have emerged as a pivotal player in the pursuit of clean energy solutions. As the adoption of solar technology continues to increase, it becomes imperative to address the some of the challenges associated with these systems. One such challenge that demands meticulous attention is the occurrence of DC series arcs.

DC series arcs, characterized by unintentional electrical discharges across series-connected components, represent a potential threat to the integrity and efficiency of solar energy systems. Identifying and mitigating these arc faults is crucial not only for enhancing the overall performance of solar panels but also for safeguarding against the risk of electrical fires.

This dataset was generated using a Simulink model based on the most common topology for PV DC power converters and known properties of arc events. The model consists of 4 boost converters connect to 4 individual PV panels and each can be individually controlled. Each converter is operated with a PWM module commanded by a duty cycle value and operating at a fixed frequency of 64kHz. The currents of each PV string are measured and added into a single signal, simulating existing HW architecture for arc detection in residential PV systems. The arc event is simulated by injecting gaussian noise limited to a specific frequency band with a range of 10 to 50 kHz.

This dataset is intended to help in the evaluation of arc detection algorithms based on current measurements.

Each file in the dataset contains 6 columns as follows: simulation timestamp, 250kHz sample rate current data, slow DC current measurement for each string in the system (4 strings)

The name of the file described the conditions in which that set was obtained and follows this pattern:
test_ + 
A + current target on string A +
B + current target on string B +
C + current target on string C +
D + current target on string D +
A + voltage target on string A +
B + voltage target on string B +
C + voltage target on string C +
D + voltage target on string D +
A + impedance on string A +
B + impedance on string B +
C + impedance on string C +
D + impedance on string D +
+ _trans + A, B, C or D +
+ _arc + 0 or 1 + .csv
DOI: 10.6084/m9.figshare.22122374.v4
title: Raw data and Analysis

description: The raw data on behavior and physical fitness. The behavior for sampling worker before joining WE is on sheet behavior 31 and 62 Then, we show all data for behavior and physical fitness.
DOI: 10.6084/m9.figshare.28278929.v1
title: Supplementary Tables for "Phylogenomics and functional annotation of 530 non-<i>Saccharomyces </i>yeasts from winemaking environments reveals their fermentome and flavorome"

description: Supplementary Table S1- Quality control of the 661 genomes considered in the present study.<br>Supplementary Table S2 - Taxonomic information of the 134 yeast species considered in this work, in particular regarding discrepancies found in different taxonomic databases, and the aggregation of different synonyms under the same accepted name <br>Supplementary Table S3 - Comparison of number of Protein Coding Sequences (CDS) after genome annotation with our pipeline, in comparison with annotations available in NCBI and in literature.<br>Supplementary Table S4 - Functional annotation of the 530 non-Saccharomyces proteomes considered in this study (see methods for details) <br>Supplementary Table S5 - Number of genes (average of all the strains of each species (first row) ± standard deviation (second row)) annotated into each KEGG Pathway, organized by taxonomic level <br>Supplementary Table S6 - Heatmap analysis of the KEGG Pathway modules completeness in the 530 non-Saccharomyces genomes. <br>Supplementary Table S7 - Heatmap analysis of the KEGG Pathway modules completeness in the different yeast families (numbers on the third row), orders (second row), and phyla (first row)<br>Supplementary Table S8 - Information about the 93 genes identified as the ""Fermentome of S. cerevisiae"", according with Walker et al. 2014, and their presence in the genome of 530 non-Saccharomyces yeasts<br>Supplementary Table S9 - BLAST results of S. cerevisiae proteins in the non-Saccharomyces genomes. <br>Supplementary Table S10 - 41 genes defined as the Fermentome of non-Saccharomyces yeasts within the present work.<br>Supplementary Table S11 - Presence of the 96 genes in the 530 non-Saccharomyces genomes, selected from the literature as being relevant for aroma and flavour production in wine.
DOI: 10.6084/m9.figshare.7945601.v1
title: gVCF_NA18526

description: 1000 Genomes gVCF mapped to hs37d5 for NA18526. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17632/wjwbwrn28p
title: AI Applications in Climate Research Dataset

description: This contains the files for the paper "Climate Change and Artificial Intelligence: Assessing the Global Research Landscape."
 
File 1 contains research clusters that are in the 95th percentile of containing climate focused literature. 
File 2 contains research clusters with at least 5 percent R climate publications and 5 percent AI-related publications plus an average publication citation of two or more and the top country being either the United States or China.
DOI: 10.6084/m9.figshare.12851168.v1
title: Glomerular C4 deposition and glomerulosclerosis predict worse renal outcomes in Chinese patients with IgA nephropathy

description: Immunoglobulin A nephropathy (IgAN) is a clinical and pathological syndrome with heterogenous manifestation and progression. Complement activation is involved in the disease. However, the clinical significance of C4 deposition in IgAN is obscure. A multicenter retrospective study was conducted in biopsy-proven IgAN patients. Based on mesangial C4 deposition, patients were divided into two groups. The baseline clinical data and immunopathological phenotypes were compared. The composite endpoint was defined as eGFR decline greater than 50%, doubling of baseline serum creatinine, the occurrence of end-stage renal disease (ESRD). A total of 642 IgAN patients were recruited, with 41 patients showing mesangial C4 deposition. The mesangial C4 positive group showed lower serum albumin, higher proteinuria, and a higher rate of IgG, IgM, and C1q mesangial deposition. After a median follow-up of 43.18 months, 81 (12.62%) patients achieved the composite endpoint. The multivariate Cox regression models identified glomerular C4 deposition (hazard ratios [HR] = 3.22, 95% confidence intervals [CI] = 1.51–6.87, <i>p</i> &lt; 0.01), global sclerosis (G1 vs. G0, HR = 1.90, 95%CI = 1.02–3.52, <i>p</i> = 0.04; G2 vs. G0, HR = 3.72, 95%CI = 1.98–7.00, <i>p</i> &lt; 0.01), male (HR = 1.80, 95%CI = 1.10–2.97, <i>p</i> = 0.02), serum creatinine (HR = 1.01, 95%CI = 1.00–1.01, <i>p</i> &lt; 0.01), triglyceride (HR = 1.17, 95%CI = 1.01–1.35, <i>p</i> = 0.04), proteinuria (HR = 1.07, 95%CI = 1.01–1.13, <i>p</i> = 0.02), serum C3 level (HR = 0.05, 95%CI = 0.01–0.25, <i>p</i> &lt; 0.01), and serum C4 level (HR = 99.59, 95%CI = 8.69–1140.89, <i>p</i> &lt; 0.01) as independent risk factors for poor renal outcomes. Glomerular mesangial C4 deposition and global sclerosis are independent predictors for poor prognosis in IgAN patients.
DOI: 10.6084/m9.figshare.27003022.v1
title: Archive of data and code associated with the publication "<b>Nanoscale 3D DNA tracing reveals the mechanism of self-organization of mitotic chromosomes</b>" by Beckwith, Brunner, et.al.

description: This archive contains data, code and examples associated with the manuscript "<b>Nanoscale 3D DNA tracing reveals the mechanism of self-organization of mitotic chromosomes</b>" by Beckwith, Brunner, et.al.Supplementary Movie S1 shows an example of a dynamic simulation of a 100 Mb chromosome undergoing mitotic compaction, see manuscript for more details.The zip archive contains the following files:environment.yml: File used to automatically install needed python packages into a virtual environment.LE_sim_functions.py: Python function specifications required to run 1D loop extrusion simulationssimulation_analysis_functions.py: Python function specifications for functions required to analyse simulated polymer conformations and compare to experimental data.trace_analysis_functions.py: Python function specifications for functions required to analyse experimental polymer conformations.run_LE_sim.ipynb: Jupyter notebook containing code examples to run 1D loop extrusion simulations to be used as input for dynamic polymer simulations.run_polychrom_LE.py: Executable python program to run dynamic polychrom simulations based on the 1D loop extrusions. Run by using in the appropriate environment (see below) "python run_polychrom_LE ----folder_path "Path to folder created by run_LE_sim notebook" ". Note this script requires the polychrom (https://github.com/open2c/polychrom) package to run, at is recommended to run on a GPU (see polychrom documentation).simulation_analysis.ipynb: Jupyter notebook containing example analysis of simulated polymer conformations.exp_data: Folder with experimental tracing data (see README.txt inside folder for a detailed description).<br><br>To install the necessary Python packages create the associated environment using conda:conda env create -f environment.ymlconda activate mitofold_simulation_analysisRun the notebooks and scripts in this environment.
DOI: 10.6084/m9.figshare.28391396.v1
title: VIP-Seq of Shewanella psychrophila WP2

description: Genome Sequencing of prophages in the supernatants of Shewanella psychrophila WP2.<br>C1: control-1<br>C2: control-2<br>M1: MMC-1<br>M2: MMC-2
DOI: 10.6084/m9.figshare.5686987.v2
title: ADK Long-term data and code compilation

description: Long-term dataset of lake biology and chemistry from 28 lakes in the Adirondack Park, northern New York State. Includes standard limnological parameters (secchi, temp, dissolved oxygen), baseline chemistry (pH, phosphorous, nitrogen, sulfate, nitrate, acid neutralizing capacity, among others), biological organism observations (phytoplankton, zooplankton). Originally collected to examine the long-term recovery of lakes and their biota from acidification.<br><br>Includes raw data, processed data, and custom R code for dataset cleaning and harmonization. <br>
DOI: 10.6084/m9.figshare.9582674.v1
title: Supplementary Material for: Sahamalaza Sportive Lemur, <b><i>Lepilemur sahamalaza</i></b>, Vocal Communication: Call Use, Context and Gradation

description: Stereotypical vocalisations can facilitate long-distance communication in dense and, thus, sound-degrading forest habitats. Despite this, primate vocal repertoires often also include gradations between different call types that are used in social interactions. Because many nocturnal primates show a solitary social structure, it has been difficult to assess the role vocalisations play in mediating their social encounters. Here we aim to expand on the call types of Sahamalaza sportive lemurs, <i>Lepilemur sahamalaza</i>, as well as investigate their variability and use in social contexts. Through long-term behavioural observations with concurrent recording of vocalisations of known and unknown individuals between 2015 and 2016, we described three previously unrecorded calls and expanded the vocal repertoire to 12 different call types that were used in both targeted social and broadcast solitary contexts. Linear discriminant function and cluster analysis supported initial observations that vocalisations within call types were variable and that at least two call types can be classified as “graded,” contrary to expectations. Despite variations in call-context connections, no clear patterns of call use could be established. However, measurable differences in vocal behaviour between the seasons and the sexes indicate that calling is used in a reproductive context, similar to other nocturnal and diurnal primates.
DOI: 10.17632/gw86x9tfzp
title: Data for: Influences of Lifestyle Profiles and Problematic Internet Use on Mental Distress in Hong Kong University Students

description: The dataset contains gender, age, year of study, Ethnicity=1 (Hong Kong Chinese), GHQ-12 composite score, 5 HPLP-IICR subscale scores, GPIUS2 composite score, term times.
DOI: 10.17632/xt7mtmn393
title: Magma ocean viscosity

description: Data Set S1
DOI: 10.6084/m9.figshare.7551026.v1
title: OTU table

description: Number of sequences of each Operational Taxonomic Units (OTUs) recovered from stomach content analysis of <i>Chromis viridis </i>(n=27), <i>Dascyllus flavicaudus </i>(n=34) and <i>Pocillopora eydouxi </i>(n=3) using metabarcoding sequencing of the mitochondrial Cytochrome c Oxidase Subunit I (COI). <br>Column "Source ID": An OTU was considered to match a reference sequence in the Moorea BIOCODE database, GenBank or BOLD if the level of similarity was higher than 97% (BIOCODE: &gt;97% similarity to BIOCODE reference barcode; Match: &gt;97% similarity to GenBank or BOLD reference barcode). OTUs with &lt;97% similarity to reference COI barcodes were assigned (and labeled as "Assigned" in Column "Source ID") to phyla using a Bayesian phylogenetic approach implemented in the Statistical Assignment Package (SAP) and closest Blast hits (if &gt;85% similarity, see Methods section). OTUs that could not be confidently assigned using any of the methods above were labelled “NoMatch”.
DOI: 10.17632/6djjztkpxs
title: Measurements of flow patterns, sediment transport, and morphological change in two very sharp bends of the Middle Yangtze River

description: We investigated the morphological changes, patterns of mean flow, secondary flow, and sediment transport around two very sharp bends in the Middle Yangtze River based on field campagns.  We found that the deformation pattern is characterized by erosion of point bars and deposition of outer-bank benches, and the patterns of primary and secondary flow and sediment transport in the sharp bends undergoing significant morphological changes differ from those bends that of equilibrium river systems. The velocity data shows the ADCP measured 3D velocities (X,Y,Z) at 12 transects of the sharp bends of QGL and GYZ in the MYR.  The sediment data shows the transport rates and median diameters of suspended and bed sediments and suspended sediment concentrations at 12 measured transects.  The measurements of long-term morphorlogical change includes the cross-sectional profiles of 4 typical cross sections and the deformation depth duiring the period 2002-2018 around the QGL and GYZ bends. The deformation depth are shown with the tif-format  (deformation depth (2002-2018)), which can be viewed in the open-source software QGIS planform (https://www.qgis.org/en/site/).
DOI: 10.17632/b57nv864gy
title: Medical AI Venture Capital - Pitchbook Data

description: Data collected from Pitchbook regarding the venture landscape for Medical AI
DOI: 10.6084/m9.figshare.24081438.v50
title: lunar_surface_chemistry_maps

description: The data files depict the Mg# values and the abundances of SiO2, TiO2, Al2O3, FeO, MgO and CaO observed by the KAGUYA multiband imager. The data files are in the format of .tif and can be opend by the software ArcGIS.
DOI: 10.6084/m9.figshare.6653297.v1
title: PA42.3.0.protein_new.txt

description: Daphnia pulex genome-wide protein sequences
DOI: 10.6084/m9.figshare.7267433.v1
title: The Copenhagen Networks Study interaction data

description: The data represents the multi-layer temporal network which connects a population of more than 700 university students over a period of four weeks. The dataset was collected via smartphones as part of the Copenhagen Networks Study.<br>We include the network of physical proximity among the participants (estimated via Bluetooth signal strength), the network of phone calls (start time, duration, no content), the network of text messages (time of message, no content), and information about Facebook friendships. Thus, we provide multiple types of communication networks expressed in a single, large population with high temporal resolution, and over a period of multiple weeks, a fact which makes the dataset shared here unique. We expect that reuse of this dataset will allow researchers to make progress on the analysis and modeling of human social networks. <br>
DOI: 10.17632/n4mccs2zfg
title: Mitochondrial DNA integrity and metabolome profile are preserved in the human induced pluripotent stem cell reference line KOLF2.1J

description: This dataset corresponds to a manuscript submitted to Stem Cell Reports with the same title. 
It includes the files necessary to reproduce the results described in the manuscript:
- GT19-38445_with_p_MT.bam (short-read whole genome sequencing data containing only reads mapped to the mitochondrial DNA)
- KOLF2.1J targeted ONT mtDNA.fastq (long-read targeted mitochondrial DNA sequencing of nine PCR amplicons spanning the entire mitochondrial genome)
- KOLF2.1J WGS ONT.bam (long-read whole genome sequencing data containing only reads mapped to the mitochondrial DNA)
- Jupyter Notebooks containing the code used to reproduce the results: Short-read WGS data processing.ipynb and Short-read WGS data visualization.ipynb; The latter is also used to visualize ONT data (file names need to be changed accordingly)
- The reference used for alignment and a shifted version to account for the artificial breakage point: rCRS.fasta and rCRS_shifted.fasta
- Jupyter Notebook containing code for targeted ONT mitochondrial DNA sequencing variant calling using Mutserve: Targeted ONT seq variant calling.ipynb
-- For analysis of WGS data, the BAM file KOLF2.1J WGS ONT.bam is used and variants are called according to the Targeted ONT seq variant calling.ipynb notebook with adjustment of the calling threshold to 0.01.
- Sanger sequencing results of m625 conspicuous position described in the manuscript: kolf_mt2_rev_mt2_internal_rev.fasta, kolf_mt2_rev_mt2_internal_rev.ab1, kolf_mt2_fwd_mt2_internal_fwd.fasta, kolf_mt2_fwd_mt2_internal_fwd.ab1

Additional information can be found below.
In case of any problems, please contact the authors.
DOI: 10.6084/m9.figshare.16610449.v1
title: site_frame.csv

description: Full dataset of site-aggegreated phenotypic, environmental and management data. Site-years only, not aggrgeated by genotype.<br>
DOI: 10.6084/m9.figshare.24534817.v1
title: Supplementary Material for: Marked choroidal thinning observed after intravitreal brolucizumab injection

description: Introduction: Here, we report a case of severe intraocular inflammation (IOI) and prominent choroidal thinning following the initial intravitreal brolucizumab injection (IVBr). Case presentation: The patient was a 75-year-old Japanese man with type 2 age-related macular degeneration of both eyes. Until 2015, he had undergone two intravitreal anti-vascular endothelial growth factor (anti-VEGF) injections and two photodynamic therapies in his right eye. His decimal best-corrected visual acuity was 0.1 in the right and 0.1 in the left eye. Central choroidal thickness (CCT) measured 240 μm in his right eye. IVBr was administered to the right eye. The patient reported pain in the right eye 23 days after the injection. On day 26, panuveitis and retinal vasculitis were observed in the right eye. CCT measured 436 μm. On the same day, a sub-tenon triamcinolone injection was administered. On day 42, retinal inflammation remained at a similar level. The CCT decreased to 164 μm. On day 68, the intraocular pressure (IOP) in the right eye increased to 39 mmHg, and IOI persisted. On day 89, the patient's eye pain disappeared, and the IOP decreased to 13 mmHg. On day 225, the IOI and symptoms were completely resolved. The decimal BCVA was 0.04 in the right eye, and CCT measured 84 μm. Conclusion: Brolucizumab is a highly effective anti-VEGF drug; however, it has the potential to induce inflammation in tissues adjacent to the retina and may occasionally cause irreversible sequelae.
DOI: 10.6084/m9.figshare.28083020.v1
title: FileS1_TaxonStatistics_forams.xlsx

description: <b>Summary composition statistics for each foraminiferan sample.</b> Best-hit rDNAs were identified <i>via</i> BLASTn against the non-redundant databases through NCBI. P-values determined using the Spearman rank correlation test.
DOI: 10.6084/m9.figshare.5977024.v1
title: Supplementary Material for: Antidepressant Use by Class: Association with Major Adverse Cardiac Events in Patients with Coronary Artery Disease

description: <b><i>Background:</i></b> To assess use of antidepressants by class in relation to cardiology practice recommendations, and the association of antidepressant use with the occurrence of major adverse cardiovascular events (MACE) including death. <b><i>Methods:</i></b> This is a historical cohort study of all patients who completed cardiac rehabilitation (CR) between 2002 and 2012 in a major CR center. Participants completed the Patient Health Questionnaire (PHQ-9) at the start and end of the program. A linkage system enabled ascertainment of antidepressant use and MACE through 2014. <b><i>Results:</i></b> There were 1,694 CR participants, 1,266 (74.7%) of whom completed the PHQ-9 after the program. Depressive symptoms decreased significantly from pre- (4.98 ± 5.20) to postprogram (3.57 ± 4.43) (<i>p</i> &lt; 0.001). Overall, 433 (34.2%) participants were on antidepressants, most often selective serotonin reuptake inhibitors (SSRI; <i>n</i> = 299; 23.6%). The proportion of days covered was approximately 70% for all 4 major antidepressant classes; discontinuation rates ranged from 37.3% for tricyclics to 53.2% for serotonin-norepinephrine reuptake inhibitors (SNRI). Antidepressant use was significantly associated with lower depressive symptoms after CR (before, 7.33 ± 5.94 vs. after, 4.69 ± 4.87; <i>p</i> &lt; 0.001). After a median follow-up of 4.7 years, 264 (20.9%) participants had a MACE. After propensity matching based on pre-CR depressive symptoms among other variables, participants taking tricyclics had significantly more MACE than those not taking tricyclics (HR = 2.46; 95% CI 1.37–4.42), as well as those taking atypicals versus not (HR = 1.59; 95% CI 1.05–2.41) and those on SSRI (HR = 1.45; 95% CI 1.07–1.97). There was no increased risk with use of SNRI (HR = 0.89; 95% CI 0.43–1.82). <b><i>Conclusion:</i></b> The use of antidepressants was associated with lower depression, but the use of all antidepressants except SNRI was associated with more adverse events.
DOI: 10.11583/dtu.20099114.v2
title: DFT energies with SZ basis of the molecules

description: The energy values of the QM9 molecules with the 76 XC functionals with SZ dataset. This item is part of the collection MultiXC-QM9 with DOI: 10.11583/DTU.c.6185986
DOI: 10.6084/m9.figshare.1190756.v1
title: "Is allometry of sexual traits adaptive? A field test with territorial damselflies

description: Supporting data for the above paper