cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4225/75/56b2fd48b92d5
title: Key Biogeochemical Factors Affecting Soil Carbon Storage In Posidonia Meadows

description: The database compiles published data (in Serrano et al. 2015, Biogeosciences, doi:10.5194/bgd-12-18913-2015) on biogeochemical characteristics (age, density, organic carbon, inorganic carbon, stable carbon isotopes and sediment grain size) of sediments underneath seagrass meadows (Posidonia sinuosa) along a bathymetric gradient (from 2 to 8 m) and adjacent un-vegetated patches in Garden Island (Perth, Western Australia). The dataset compiles data on biogeochemical sediment characteristics (including organic and inorganic carbon stocks and burial rates) for a total of 5 cores (4 cores from seagrass meadows and 1 core from adjacent un-vegetated sediments). Enquiries about the dataset may be sent to Oscar Serrano o.serranogras@ecu.edu.au.
DOI: 10.15470/v9swe3
title: Dataset of the arthropodfauna of Sierra Nevada from the zoological collections of the University of Granada

description: This dataset gathers the data of the specimens present in the Zoological Collections of the University of Granada (CCZ-UGR) and coming from Sierra Nevada. As a result of the process of adaptation and improvement of the primary data, 10,005 records have been selected out of the 32,120 catalogued, corresponding to 55,292 specimens out of the 136,837 that are currently catalogued. These figures reveal the important representation of the fauna of the Sierra Nevada, approximately one third of the CCZ-UGR.
DOI: 10.34808/j7da-zj12
title: SEM images of biosorbents (CC) after DES impregnation

description: SEM images of biosorbents (CC) after DES impregnation
DOI: 10.34740/kaggle/dsv/7822183
title: Olympic_cities_summary
DOI: 10.6084/m9.figshare.24843616
title: Maternal adverse childhood experiences (ACEs) and offspring imprinted gene DMR methylation at birth

description: Adverse childhood experiences (ACEs) contribute to numerous negative health outcomes across the life course and across generations. Here, we extend prior work by examining the association of maternal ACEs, and their interaction with financial stress and discrimination, with methylation status within eight differentially methylated regions (DMRs) in imprinted domains in newborns. ACEs, financial stress during pregnancy, and experience of discrimination were self-reported among 232 pregnant women. DNA methylation was assessed at <i>PEG10</i>/<i>SGCE, NNAT, IGF2, H19, PLAGL1</i>, <i>PEG3</i>, <i>MEG3-IG</i>, and <i>DLK1/MEG3</i> regulatory sequences using pyrosequencing. Using multivariable linear regression models, we found evidence to suggest that financial stress was associated with hypermethylation of <i>MEG3-IG</i> in non-Hispanic White newborns; discrimination was associated with hypermethylation of <i>IGF2</i> and <i>NNAT</i> in Hispanic newborns, and with hypomethylation of <i>PEG3</i> in non-Hispanic Black newborns. We also found evidence that maternal ACEs interacted with discrimination to predict offspring <i>PLAGL1</i> altered DMR methylation, in addition to interactions between maternal ACEs score and discrimination predicting <i>H19</i> and <i>SGCE/PEG10</i> altered methylation in non-Hispanic White newborns. However, these interactions were not statistically significant after multiple testing corrections. Findings from this study suggest that maternal ACEs, discrimination, and financial stress are associated with newborn aberrant methylation in imprinted gene regions.
DOI: 10.6084/m9.figshare.24843616.v1
title: Maternal adverse childhood experiences (ACEs) and offspring imprinted gene DMR methylation at birth

description: Adverse childhood experiences (ACEs) contribute to numerous negative health outcomes across the life course and across generations. Here, we extend prior work by examining the association of maternal ACEs, and their interaction with financial stress and discrimination, with methylation status within eight differentially methylated regions (DMRs) in imprinted domains in newborns. ACEs, financial stress during pregnancy, and experience of discrimination were self-reported among 232 pregnant women. DNA methylation was assessed at <i>PEG10</i>/<i>SGCE, NNAT, IGF2, H19, PLAGL1</i>, <i>PEG3</i>, <i>MEG3-IG</i>, and <i>DLK1/MEG3</i> regulatory sequences using pyrosequencing. Using multivariable linear regression models, we found evidence to suggest that financial stress was associated with hypermethylation of <i>MEG3-IG</i> in non-Hispanic White newborns; discrimination was associated with hypermethylation of <i>IGF2</i> and <i>NNAT</i> in Hispanic newborns, and with hypomethylation of <i>PEG3</i> in non-Hispanic Black newborns. We also found evidence that maternal ACEs interacted with discrimination to predict offspring <i>PLAGL1</i> altered DMR methylation, in addition to interactions between maternal ACEs score and discrimination predicting <i>H19</i> and <i>SGCE/PEG10</i> altered methylation in non-Hispanic White newborns. However, these interactions were not statistically significant after multiple testing corrections. Findings from this study suggest that maternal ACEs, discrimination, and financial stress are associated with newborn aberrant methylation in imprinted gene regions.
DOI: 10.6084/m9.figshare.24843616.v2
title: Maternal adverse childhood experiences (ACEs) and offspring imprinted gene DMR methylation at birth

description: Adverse childhood experiences (ACEs) contribute to numerous negative health outcomes across the life course and across generations. Here, we extend prior work by examining the association of maternal ACEs, and their interaction with financial stress and discrimination, with methylation status within eight differentially methylated regions (DMRs) in imprinted domains in newborns. ACEs, financial stress during pregnancy, and experience of discrimination were self-reported among 232 pregnant women. DNA methylation was assessed at <i>PEG10</i>/<i>SGCE, NNAT, IGF2, H19, PLAGL1</i>, <i>PEG3</i>, <i>MEG3-IG</i>, and <i>DLK1/MEG3</i> regulatory sequences using pyrosequencing. Using multivariable linear regression models, we found evidence to suggest that financial stress was associated with hypermethylation of <i>MEG3-IG</i> in non-Hispanic White newborns; discrimination was associated with hypermethylation of <i>IGF2</i> and <i>NNAT</i> in Hispanic newborns, and with hypomethylation of <i>PEG3</i> in non-Hispanic Black newborns. We also found evidence that maternal ACEs interacted with discrimination to predict offspring <i>PLAGL1</i> altered DMR methylation, in addition to interactions between maternal ACEs score and discrimination predicting <i>H19</i> and <i>SGCE/PEG10</i> altered methylation in non-Hispanic White newborns. However, these interactions were not statistically significant after multiple testing corrections. Findings from this study suggest that maternal ACEs, discrimination, and financial stress are associated with newborn aberrant methylation in imprinted gene regions.
DOI: 10.34740/kaggle/dsv/7822396
title: AutoXGB
DOI: 10.34740/kaggle/dsv/7822398
title: OnlineFree
DOI: 10.6084/m9.figshare.25375108
title: Raw datasets xlsx

description: Effect of chicory forage and its active ingredients on growth performance and enteritis remedy in juvenile ostriches
DOI: 10.6084/m9.figshare.25375108.v1
title: Raw datasets xlsx

description: Effect of chicory forage and its active ingredients on growth performance and enteritis remedy in juvenile ostriches
DOI: 10.6084/m9.figshare.25388260.v3
title: 01.原始数据

description: 茄子转录组数据
DOI: 10.48425/4rixlgvg
title: V_rodents_cameratraps_annual_metadata_lemming_blocks

description: Annual metadata of small mammal cameras on the Varanger peninsula. The dataset contains information recorded during the annual camera check, such as the serial number of the camera, the condition of the camera and other relevant comments.

The dataset includes five different types of files and all data files are saved as ;-separated txt-files:

* One data file per year with metadata from the annual camera check (_YEAR.txt)
* One data file per year with observations on the images during the annual camera check (only for 2016 and
2017) (_observations_YEAR.txt)
* One coordinate file with coordinates of all sites (_coordinates.txt)
* One auxiliary file with information about which sites are included in the study design (_aux.txt)
* One readme file with additional information (_readme.pdf)

Image metadata is available in the dataset 'V_rodents_cameratraps_image_metadata_lemming_blocks'.
Classification of all images is available in the datasets 'V_rodents_cameratraps_image_classification_lemming_blocks' and
'V_rodents_cameratraps_manual_image_classification_lemming_blocks'.
DOI: 10.5281/zenodo.10782123
title: Supporting online material for Irradiation induced mineral changes of NWA10580 meteorite, Gyollai I. et al. 2024

description: Online supporting material for the upcoming publication titled Irradiation induced mineral changes of NWA10580 meteorite determined by infrared analysis by I. Gyollai et al.
DOI: 10.5281/zenodo.10782122
title: Supporting online material for Irradiation induced mineral changes of NWA10580 meteorite, Gyollai I. et al. 2024

description: Online supporting material for the upcoming publication titled Irradiation induced mineral changes of NWA10580 meteorite determined by infrared analysis by I. Gyollai et al.
DOI: 10.11588/data/vm8zkt
title: Motional Narrowing Effects in the Excited State Spin Populations of Mn-Doped Hybrid Perovskites [Research Data]

description: Spin-orbit coupling in the electronic states of solution-processed hybrid metal halide perovskites forms complex spin-textures in the band structures and allows for optical manipulation of excited state spin-polarizations. Here, we report that motional narrowing acts on the photoexcited spin-polarization in CH3NH3PbBr3 thin films, which are doped at percentage-level with Mn2+ ions. Using ultrafast circularly polarized broadband transient absorption spectroscopy at cryogenic temperatures, we investigate the spin population dynamics in our doped hybrid perovskites and find that spin relaxation lifetimes are increased by a factor of three compared to undoped materials. Using quantitative analysis of the photoexcitation cooling processes, we reveal increased carrier scattering rates in the doped perovskites as the fundamental mechanism driving spin-polarization maintaining motional narrowing. Our work reports transition-metal doping of hybrid perovskites as a concept to extend spin lifetimes of hybrid perovskites.
DOI: 10.17632/63m8sjtnvh.1
title: Mitigation to high temperature improves growth and vase life of Gladiolus cut flowers by regulating antioxidant activities

description: This study was aimed to produce high quality gladiolus cut flower production by application of green net shade so that farmers may be opting to protected cultivation for domestic and export flower markets.
DOI: 10.17632/svhvwtxtzh.1
title: CPU Exponential Rosenbrock Methods

description: Matlab programs that are used in article "Efficient exponential Rosenbrock methods till order four" by B. Cano and M. J. Moreta

For questions or enquiries about the programs, please contact M. J. Moreta: mjesusmoreta@ccee.ucm.es
DOI: 10.17632/63m8sjtnvh.2
title: Mitigation to high temperature improves growth and vase life of Gladiolus cut flowers by regulating antioxidant activities

description: This study was aimed to produce high quality gladiolus cut flower production by application of green net shade so that farmers may be opting to protected cultivation for domestic and export flower markets.
DOI: 10.17632/37pys4vxt4.1
title: Nigerian innovation survey data, collected with NEPAD support, prepared with PEDL funding

description: The pooled cross-sectional dataset (1359 firms in total) available for download has some specific features: * The dataset includes data from wave 1 (2005-2007) and wave 2 (2008-2010) of the Nigerian innovation surveys. * The year variable identifies the different survey waves. Wave 1 was completed in 2008 and wave 2, in 2011. * The service variable sorts the observations broadly into manufacturing and services. * The id variable identifies each unique firm. Repeatedness was ignored because repeated cases are only about 2.5%. * As much as possible, variables have been matched across the two waves. * Due to coding changes and some inconsistencies in the survey instrument, a few variables could not be matched. * Any variable that could not be matched is retained in its original form. * Some of the variables have notes attached to them. The notes are consistent with what is in the accompanying codebook.xls * Item numbering on the questionnaire for the two waves are not consistent. Thus, rather than use question numbers for variable names – as is commonly done – intuitive variable names and labels (defined in detail in the accompanying codebook.xls) are used. * Definitions of main concepts can be found in the accompanying codebook.xls. * It is strongly recommended that users thoroughly familiarize themselves with the accompanying codebook as well as the questionnaires for each of the waves before applying the dataset. This is crucial especially because of the skip patterns. While everything was done to ensure that the skip patterns were all correctly established, there can be no guarantee of perfection. * It is also strongly recommended that users be familiar with the nature of innovation surveys as this will help in understanding how to treat the data for analysis. The Oslo Manual, which is freely available online, is a very useful resource. To have a feel of the sectoral distribution of the sample, type in Stata: tab service year
DOI: 10.17632/nhgycstdmr.1
title: The interplay of secondary EFL teachers’ pedagogical beliefs and pedagogical content knowledge with their instructional materials use approach orientation

description: This data set is from my study on investigating the interplay of secondary EFL teachers’ pedagogical beliefs and pedagogical content knowledge with their instructional materials use approach orientation. The data includes the results of reliability, descriptive statistics, EVA, CR, EFA, CFA, and SEM
DOI: 10.17632/v55kc78vkd.1
title: Lassen et al., 2024

description: Supplemental tables for Lassen et al. 2024 submission
DOI: 10.17632/fddmktxsd9.1
title: CEEMDANT

description: CEEMDANLT is an optimized vision of iceemdan
This code is developed based on the code of iceemdan.
The file of iceemdan is available at http://www.bioingenieria.edu.ar/grupos/ldnlys/
Colominas MA, Schlotthauer G, Torres ME. "Improve complete ensemble EMD: A suitable tool for biomedical signal processing" Biomedical Signal Processing and Control vol. 14 pp. 19-29 (2014)
DOI: 10.17632/3chnnkrkyk.1
title: raw data and survey

description: raw data and survey quesionnaire for publication
DOI: 10.17632/4sxbcz2wnn.1
title: A Direct Statistic Mapping Approach for Multiple Driving Force Analysis of Urban Water Quality under Multi-Time Scales

description: The data aims to reproduce results in a manuscript.
DOI: 10.17632/9pf5n687z4.1
title: Predicting bonds between collagens – A multiple alignment approach

description: The supplement contains all materials (data, scripts, etc.) used in this publication. See the "Supplement – ReadMe" file for the structure of the data.
DOI: 10.17632/9pf5n687z4.2
title: Predicting bonds between collagens – An alignment approach

description: The supplement contains all materials (data, scripts, etc.) used in this publication.
DOI: 10.17632/9pf5n687z4.3
title: Constructing networks for comparison of collagen types

description: The supplement contains all materials (data, scripts, etc.) used in this publication.
DOI: 10.17632/kmbm8wvtxx.1
title: Experiments to evaluate the workability of self-compacting concrete.

description: Title: To conduct experiments to evaluate the workability of self-compacting concrete.
Overview: The test was carried out in the Structural engineering laboratory at the Department of Civil Engineering, IIT Kharagpur, India. All the experiments were conducted in February 2024 by Kumar Anjneya, a research scholar in the Department of Civil Engineering, under the guidance of Prof. Arghya Deb.
Objective: To study the role of particle morphology on the rheology of self-compacting fresh concrete.
Tests conducted: Sieve analysis, Tests for material characterization of cement, sand and coarse aggregate, Slump test, V-funnel test (& T5 measurement for segregation potential), J-ring.
DOI: 10.17632/kmbm8wvtxx.2
title: Experiments to evaluate the workability of self-compacting concrete

description: Title: To conduct experiments to evaluate the workability of self-compacting concrete.
Overview: The test was carried out in the Structural engineering laboratory at the Department of Civil Engineering, IIT Kharagpur, India. All the experiments were conducted in February 2024 by Kumar Anjneya, a research scholar in the Department of Civil Engineering, under the guidance of Prof. Arghya Deb.
Objective: To study the role of particle morphology on the rheology of self-compacting fresh concrete.
Tests conducted: Sieve analysis, Tests for material characterization of cement, sand and coarse aggregate, Slump test, V-funnel test (& T5 measurement for segregation potential), J-ring.
DOI: 10.17632/96vzkjp7mh.1
title: MacCracken 2010 SAI Restoring Arctic Climate Field Trial Proposal for 2015

description: A hypothetical SAI restoring Arctic climate field-test proposal written by the author in 2010.
DOI: 10.17632/swjrfwy9zh.1
title: Rowangchari Debotakhum

description: Rowangchari Debotakhum
DOI: 10.17632/zbtvkyzwcj.1
title: R-code and data from: Effects of macro- and micro-nutrients on momentary and season-long feeding responses by select species of ants

description: This data set described here is supplementary to an article titled: “Effects of macro- and micro-nutrients on momentary and season-long feeding responses by select species of ants”. Few studies have examined how various macro- and micro-nutrient types shape foraging responses in ants. We tested short term and season-long foraging responses of the ant species C. modoc and M. rubra to various micro- and macro-nutrients. We also tested if these findings were similar in other species, L. niger and F. aserva. The full methodology, results, and their interpretation can be found in the publication.

Abstract from article: 
"Few studies have investigated the relative contribution of specific nutrients to momentary and season-long foraging responses by ants. Using western carpenter ants, Camponotus modoc, and European fire ants, Myrmica rubra, as model species, we: (1) tested preferential consumption of various macro- and micro-nutrients; (2) compared consumption of preferred macro-nutrients; (3) investigated seasonal shifts (late May to mid-September) in nutrient preferences; and (4) tested whether nutrient preferences of C. modoc and M. rubra pertain to black garden ants, Lasius niger, and thatching ants, Formica aserva. In laboratory and field experiments, we measured nutrient consumption by weighing Eppendorf tubes containing aqueous nutrient solutions before and after feeding by ants. Laboratory colonies of C. modoc favored nitrogenous urea and essential amino acids (EAAs), whereas M. rubra colonies favored sucrose. Field colonies of C. modoc and M. rubra preferentially consumed EAAs and sucrose, respectively, with no sustained shift in preferred macro-nutrient over the course of the foraging season. The presence of a less preferred macro-nutrient in a nutrient blend did not diminish the blend’s ‘appeal’ to foraging ants. Sucrose and EAAs singly and in combination were equally consumed by L. niger, whereas F. aserva preferred EAAs. Baits containing both sucrose and EAAs were consistently consumed by the ants studied in this project and should be considered for pest ant control."

We have uploaded our data and scripts as an R studio project. Code used to wrangle data, analyze data and generate plots can be accessed in the project folder by opening the project file. The project contains: 

---Data
Data files of laboratory and field experiments to assess ant consumption on various nutrients.
 
---Outputs
Plots and csv files generated from data analysis.

---Scripts
Scripts of R code used to wrangle data, conduct analyses, and generate outputs.
DOI: 10.17632/4r55hvz87r.1
title: Negative DNA supercoiling induces genome-wide Cas9 off-target activity. Newton MD et al

description: CRISPR/Cas9 is a powerful gene-editing technology, however off-target activity remains an important consideration for therapeutic applications. We have previous-ly shown that force stretching DNA induces off-target activity and hypothesised that distortions of the DNA topology in vivo, such as negative DNA supercoiling, could reduce Cas9 specificity. Using single-molecule optical-tweezers, we demonstrate that negative supercoiling λ-DNA induces sequence-specific Cas9 off-target bind-ing at multiple sites, even at low forces. Using an adapted CIRCLE-seq approach, we detect over 10,000 negative supercoiling induced Cas9 off-target double-strand breaks genome wide, caused by increased mismatch tolerance. We further demon-strate in vivo that directed local DNA distortion increases off-target activity in cells and that induced off-target events can be detected during Cas9 genome-editing. These data demonstrate that Cas9 off-target activity is regulated by DNA topology in vitro and in vivo, suggesting that cellular processes, such as transcription and replication, could induce off-target activity at previously overlooked sites.
DOI: 10.17632/4r55hvz87r.2
title: Negative DNA supercoiling induces genome-wide Cas9 off-target activity. Newton MD et al

description: CRISPR/Cas9 is a powerful gene-editing technology, however off-target activity remains an important consideration for therapeutic applications. We have previous-ly shown that force stretching DNA induces off-target activity and hypothesised that distortions of the DNA topology in vivo, such as negative DNA supercoiling, could reduce Cas9 specificity. Using single-molecule optical-tweezers, we demonstrate that negative supercoiling λ-DNA induces sequence-specific Cas9 off-target bind-ing at multiple sites, even at low forces. Using an adapted CIRCLE-seq approach, we detect over 10,000 negative supercoiling induced Cas9 off-target double-strand breaks genome wide, caused by increased mismatch tolerance. We further demon-strate in vivo that directed local DNA distortion increases off-target activity in cells and that induced off-target events can be detected during Cas9 genome-editing. These data demonstrate that Cas9 off-target activity is regulated by DNA topology in vitro and in vivo, suggesting that cellular processes, such as transcription and replication, could induce off-target activity at previously overlooked sites.
DOI: 10.17632/5cp2dyjczk.1
title: An annotated image dataset of cabbages for instance segmentation

description: This dataset contains images of cabbage (Brassica oleracea var. capitata) as a PNG file and their annotated data in COCO format (.json). The cabbage images were taken using UAVs in farmers' fields in Gifu Prefecture, Japan. The images include the growing season from early growth to just before harvest. Using this dataset as training data for deep learning models, the cabbage size can be quantified automatically.
DOI: 10.17632/cm8vnp7mts.1
title: Matriz medidas preventivas DM2

description: Matriz de datos de participantes sobre la valoración de medidas preventivas de DM2
DOI: 10.17632/6nmj25z9sk.1
title: Supplemental Figures for an article, Chandurkar et al "Transient Low Shear Stress Preconditioning Influences Long-term Endothelial Traction and Alignment under High Shear Flow"

description: Figures for average traction and predicted segmentation for all conditions
DOI: 10.17632/6nmj25z9sk.2
title: Supplemental Figures for an article, Chandurkar et al "Transient Low Shear Stress Preconditioning Influences Long-term Endothelial Traction and Alignment under High Shear Flow"

description: Figures for average traction and predicted segmentation for all conditions