cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9723314
title: Additional file 1: of A human endogenous retrovirus encoded protease potentially cleaves numerous cellular proteins

description: Tables S1aâ d. Results of TAILS analyses at pH 5.5 and pH 7 showing replicates 1 and 2 for each. Table S2. Selected human proteins with multiple cleavages by HERV-K(HML-2) protease. Table S3. Selected information from the Catalogue of Somatic Mutations in Cancer (COSMIC) for human genes for which encoded proteins were identified as substrates of HML-2 Pro. Table S4. Selected information from the Online Mendelian Inheritance in Man (OMIM) database for human genes for which encoded proteins were identified as substrates of HML-2 Pro. Table S5. Clone identifiers of cloned coding sequences of proteins investigated for processing by HERV-K(HML-2) Protease. (XLSX 1290 kb)
DOI: 10.6084/m9.figshare.9723314.v1
title: Additional file 1: of A human endogenous retrovirus encoded protease potentially cleaves numerous cellular proteins

description: Tables S1aâ d. Results of TAILS analyses at pH 5.5 and pH 7 showing replicates 1 and 2 for each. Table S2. Selected human proteins with multiple cleavages by HERV-K(HML-2) protease. Table S3. Selected information from the Catalogue of Somatic Mutations in Cancer (COSMIC) for human genes for which encoded proteins were identified as substrates of HML-2 Pro. Table S4. Selected information from the Online Mendelian Inheritance in Man (OMIM) database for human genes for which encoded proteins were identified as substrates of HML-2 Pro. Table S5. Clone identifiers of cloned coding sequences of proteins investigated for processing by HERV-K(HML-2) Protease. (XLSX 1290 kb)
DOI: 10.6084/m9.figshare.9723227
title: Additional file 1: of Genome-wide identification of histone methylation (H3K9me2) and acetylation (H4K12ac) marks in two ecotypes of switchgrass (Panicum virgatum L.)

description: Tables S1-S37. Supplementary tables with legends in the first sheet called â Supplementary Table Legendsâ . (XLSX 479 kb)
DOI: 10.6084/m9.figshare.9723227.v1
title: Additional file 1: of Genome-wide identification of histone methylation (H3K9me2) and acetylation (H4K12ac) marks in two ecotypes of switchgrass (Panicum virgatum L.)

description: Tables S1-S37. Supplementary tables with legends in the first sheet called â Supplementary Table Legendsâ . (XLSX 479 kb)
DOI: 10.6084/m9.figshare.9723167
title: Additional file 1: of A novel sub-epidemic modeling framework for short-term forecasting epidemic waves

description: Incidence outbreak data for three real outbreaks. Daily number of new SARS cases by date of symptoms onset of the 2003 SARS outbreak in Singapore as explained in the text, weekly incidence curve according to the date of symptoms onset for the second wave of the ongoing Ebola outbreak in the DRC from the WHO Situation Reports and Disease Outbreak News covering the reporting period: September 2018 to mid-April 2019 as explained in the text, and weekly incidence curve of the 2017 plague epidemic in Madagascar as explained in the text. (XLS 32 kb)
DOI: 10.6084/m9.figshare.9723167.v1
title: Additional file 1: of A novel sub-epidemic modeling framework for short-term forecasting epidemic waves

description: Incidence outbreak data for three real outbreaks. Daily number of new SARS cases by date of symptoms onset of the 2003 SARS outbreak in Singapore as explained in the text, weekly incidence curve according to the date of symptoms onset for the second wave of the ongoing Ebola outbreak in the DRC from the WHO Situation Reports and Disease Outbreak News covering the reporting period: September 2018 to mid-April 2019 as explained in the text, and weekly incidence curve of the 2017 plague epidemic in Madagascar as explained in the text. (XLS 32 kb)
DOI: 10.6084/m9.figshare.9723098
title: Additional file 2: of Genome-wide association scan for QTL and their positional candidate genes associated with internal organ traits in chickens

description: List with the Ensembl Gene ID and the respective gene names of the 756 genes annotated within the QTL detected. (TXT 17 kb)
DOI: 10.6084/m9.figshare.9723098.v1
title: Additional file 2: of Genome-wide association scan for QTL and their positional candidate genes associated with internal organ traits in chickens

description: List with the Ensembl Gene ID and the respective gene names of the 756 genes annotated within the QTL detected. (TXT 17 kb)
DOI: 10.6084/m9.figshare.9723086
title: Additional file 1: of Genome-wide association scan for QTL and their positional candidate genes associated with internal organ traits in chickens

description: An excel file with the characterization of all the 943 1-Mb SNP windows analyzed, including the percentage of the genetic variance explained by each one. (XLS 893 kb)
DOI: 10.6084/m9.figshare.9723086.v1
title: Additional file 1: of Genome-wide association scan for QTL and their positional candidate genes associated with internal organ traits in chickens

description: An excel file with the characterization of all the 943 1-Mb SNP windows analyzed, including the percentage of the genetic variance explained by each one. (XLS 893 kb)
DOI: 10.6084/m9.figshare.9723059
title: Additional file 2: of Deficiency and haploinsufficiency of histone macroH2A1.1 in mice recapitulate hematopoietic defects of human myelodysplastic syndrome

description: Table S1. Basic MDS patient/sample characteristics. Patients are classified according to the WHO classification 2016 13. Excel file provided separately. MDS-SLD - MDS with single lineage dysplasia. MDS-MLD - MDS with multi-lineage dysplasia. MDS-RS-MLD - MDS with ring sideroblasts and multi-lineage dysplasia. MDS-EB-1 - MDS with excess blasts-1. MDS-EB-2 - MDS with excess blasts-2. 5q- syndrome - MDS with isolated del(5q). (XLSX 56 kb)
DOI: 10.6084/m9.figshare.9723059.v1
title: Additional file 2: of Deficiency and haploinsufficiency of histone macroH2A1.1 in mice recapitulate hematopoietic defects of human myelodysplastic syndrome

description: Table S1. Basic MDS patient/sample characteristics. Patients are classified according to the WHO classification 2016 13. Excel file provided separately. MDS-SLD - MDS with single lineage dysplasia. MDS-MLD - MDS with multi-lineage dysplasia. MDS-RS-MLD - MDS with ring sideroblasts and multi-lineage dysplasia. MDS-EB-1 - MDS with excess blasts-1. MDS-EB-2 - MDS with excess blasts-2. 5q- syndrome - MDS with isolated del(5q). (XLSX 56 kb)
DOI: 10.6084/m9.figshare.9723023
title: Additional file 1 of Health timeline: an insight-based study of a timeline visualization of clinical data

description: A comma-separated values data file containing the transcribed insights, with the annotations used for the study. The file is in a standard format and is machine-readable. The annotations of the file are detailed in the â Data analysisâ section of this article. (CSV 24 kb)
DOI: 10.6084/m9.figshare.9723023.v1
title: Additional file 1 of Health timeline: an insight-based study of a timeline visualization of clinical data

description: A comma-separated values data file containing the transcribed insights, with the annotations used for the study. The file is in a standard format and is machine-readable. The annotations of the file are detailed in the â Data analysisâ section of this article. (CSV 24 kb)
DOI: 10.6084/m9.figshare.9722978
title: Additional file 1: of Assessing the efficacy and safety of magnesium sulfate for management of autonomic nervous system dysregulation in Vietnamese children with severe hand foot and mouth disease

description: Appendix A. Details of the general study methodology for the clinical trial. Appendix A.1. Trial study_Screening and enrolment. Appendix A.2. Trial study_Sampling. Appendix A.3. Trial study_ Initiation of study medication, safety monitoring, dose adjustment. Appendix A.4. Trial study_Emergency management. Appendix A.5. Trial study_Emergency unblinding procedure. Appendix A.6. Trial study_Additional study definitions. Appendix A.7. Trial study_Definitions for Clinical Adverse Event Grading in the trial (modified from CTCAE Version 4.03). Appendix A.8. Trial study_Definitions for Laboratory Adverse Event Grading in the trial (modified from CTCAE Version 4.03). Appendix B. Additional methods for the observational cohort study. Appendix B.1. Cohort study_Identification of study subjects. Appendix B.2. Cohort study_Data collection and data management. Appendix B.3. Cohort study_Statistical analysis. (ZIP 257 kb)
DOI: 10.6084/m9.figshare.9722978.v1
title: Additional file 1: of Assessing the efficacy and safety of magnesium sulfate for management of autonomic nervous system dysregulation in Vietnamese children with severe hand foot and mouth disease

description: Appendix A. Details of the general study methodology for the clinical trial. Appendix A.1. Trial study_Screening and enrolment. Appendix A.2. Trial study_Sampling. Appendix A.3. Trial study_ Initiation of study medication, safety monitoring, dose adjustment. Appendix A.4. Trial study_Emergency management. Appendix A.5. Trial study_Emergency unblinding procedure. Appendix A.6. Trial study_Additional study definitions. Appendix A.7. Trial study_Definitions for Clinical Adverse Event Grading in the trial (modified from CTCAE Version 4.03). Appendix A.8. Trial study_Definitions for Laboratory Adverse Event Grading in the trial (modified from CTCAE Version 4.03). Appendix B. Additional methods for the observational cohort study. Appendix B.1. Cohort study_Identification of study subjects. Appendix B.2. Cohort study_Data collection and data management. Appendix B.3. Cohort study_Statistical analysis. (ZIP 257 kb)
DOI: 10.6084/m9.figshare.9722927
title: Additional file 4: of Parkin deficiency prevents chronic ethanol-induced hepatic lipid accumulation through Î˛-catenin accumulation

description: Figure S3. Effects of Î˛-catenin siRNA on lipid accumulation in ethanol-treated human hepatic Huh7 cells. (ZIP 3603 kb)
DOI: 10.6084/m9.figshare.9722915
title: MOESM4 of Graft versus host disease and microchimerism in a JAK3 deficient patient

description: Additional file 4. NGS variants data in VCF.txt format
DOI: 10.6084/m9.figshare.9722927.v1
title: Additional file 4: of Parkin deficiency prevents chronic ethanol-induced hepatic lipid accumulation through Î˛-catenin accumulation

description: Figure S3. Effects of Î˛-catenin siRNA on lipid accumulation in ethanol-treated human hepatic Huh7 cells. (ZIP 3603 kb)
DOI: 10.6084/m9.figshare.9722918
title: Additional file 2: of SMARC-B1 deficient sinonasal carcinoma metastasis to the brain with next generation sequencing data: a case report of perineural invasion progressing to leptomeningeal invasion

description: Quantitative Gene Expression differences between samples. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.9722924
title: Additional file 3: of SMARC-B1 deficient sinonasal carcinoma metastasis to the brain with next generation sequencing data: a case report of perineural invasion progressing to leptomeningeal invasion

description: List of RNA mutational variants identified in each sample. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9722915.v1
title: MOESM4 of Graft versus host disease and microchimerism in a JAK3 deficient patient

description: Additional file 4. NGS variants data in VCF.txt format
DOI: 10.6084/m9.figshare.9722918.v1
title: Additional file 2: of SMARC-B1 deficient sinonasal carcinoma metastasis to the brain with next generation sequencing data: a case report of perineural invasion progressing to leptomeningeal invasion

description: Quantitative Gene Expression differences between samples. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.9722909
title: Additional file 1: of SMARC-B1 deficient sinonasal carcinoma metastasis to the brain with next generation sequencing data: a case report of perineural invasion progressing to leptomeningeal invasion

description: List of DNA mutations identified in each sample. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.9722924.v1
title: Additional file 3: of SMARC-B1 deficient sinonasal carcinoma metastasis to the brain with next generation sequencing data: a case report of perineural invasion progressing to leptomeningeal invasion

description: List of RNA mutational variants identified in each sample. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9722909.v1
title: Additional file 1: of SMARC-B1 deficient sinonasal carcinoma metastasis to the brain with next generation sequencing data: a case report of perineural invasion progressing to leptomeningeal invasion

description: List of DNA mutations identified in each sample. (XLSX 22 kb)
DOI: 10.15139/s3/fikoh4
title: Data for RICHS Placental lncRNA expression associated with placental cadmium concentrations and birth weight

description: Background: Prenatal heavy metal exposures, such as cadmium, can have negative effects on infant birth weight – among other developmental outcomes – with placental dysfunction potentially playing a role in these effects. In this study, we examined how differential placental expression of long non-coding RNAs (lncRNAs) may be associated with cadmium exposure and whether differences in the expression of those lncRNAs was associated with fetal growth. Methods: In the Rhode Island Child Health Study (RICHS) we used data from whole transcriptome RNA sequencing (n=199) to examine the association between lncRNA expression and measures of infant birth weight as well as placental cadmium concentrations.
DOI: 10.6084/m9.figshare.9722897
title: MOESM3 of Graft versus host disease and microchimerism in a JAK3 deficient patient

description: Additional file 3. Â NGS variants data in VCF.7z format
DOI: 10.6084/m9.figshare.9722897.v1
title: MOESM3 of Graft versus host disease and microchimerism in a JAK3 deficient patient

description: Additional file 3. Â NGS variants data in VCF.7z format
DOI: 10.6084/m9.figshare.9722882
title: Additional file 9 of Comparative transcriptomics of early petal development across four diverse species of Aquilegia reveal few genes consistently associated with nectar spur development

description: gene DE between blade and spur tissue at 1 mm stage. File format: Tab delimited text file. (TXT 18 kb)
DOI: 10.6084/m9.figshare.9722876
title: Additional file 8 of Comparative transcriptomics of early petal development across four diverse species of Aquilegia reveal few genes consistently associated with nectar spur development

description: genes in each WGCNA module. File format: Tab delimited text file. (TXT 438 kb)
DOI: 10.6084/m9.figshare.9722867
title: Additional file 6 of Comparative transcriptomics of early petal development across four diverse species of Aquilegia reveal few genes consistently associated with nectar spur development

description: genes used in spurred taxa vs A. ecalcarata PCA. File format: Tab delimited text file. (TXT 79 kb)
DOI: 10.6084/m9.figshare.9722870
title: Additional file 7 of Comparative transcriptomics of early petal development across four diverse species of Aquilegia reveal few genes consistently associated with nectar spur development

description: genes commonly DE between spurred taxa and A. ecalcarata at all developmental stages. File format: Tab delimited text file. (TXT 21 kb)
DOI: 10.6084/m9.figshare.9722882.v1
title: Additional file 9 of Comparative transcriptomics of early petal development across four diverse species of Aquilegia reveal few genes consistently associated with nectar spur development

description: gene DE between blade and spur tissue at 1 mm stage. File format: Tab delimited text file. (TXT 18 kb)
DOI: 10.6084/m9.figshare.9722867.v1
title: Additional file 6 of Comparative transcriptomics of early petal development across four diverse species of Aquilegia reveal few genes consistently associated with nectar spur development

description: genes used in spurred taxa vs A. ecalcarata PCA. File format: Tab delimited text file. (TXT 79 kb)
DOI: 10.6084/m9.figshare.9722876.v1
title: Additional file 8 of Comparative transcriptomics of early petal development across four diverse species of Aquilegia reveal few genes consistently associated with nectar spur development

description: genes in each WGCNA module. File format: Tab delimited text file. (TXT 438 kb)
DOI: 10.6084/m9.figshare.9722861
title: Additional file 5 of Comparative transcriptomics of early petal development across four diverse species of Aquilegia reveal few genes consistently associated with nectar spur development

description: genes used in developmental PCA. File format: Tab delimited text file. (TXT 176 kb)
DOI: 10.6084/m9.figshare.9722870.v1
title: Additional file 7 of Comparative transcriptomics of early petal development across four diverse species of Aquilegia reveal few genes consistently associated with nectar spur development

description: genes commonly DE between spurred taxa and A. ecalcarata at all developmental stages. File format: Tab delimited text file. (TXT 21 kb)
DOI: 10.6084/m9.figshare.9722855
title: Additional file 4 of Comparative transcriptomics of early petal development across four diverse species of Aquilegia reveal few genes consistently associated with nectar spur development

description: genes DE between DS1 and DS5 only in spurred taxa. File format: Tab delimited text file. (TXT 17 kb)
DOI: 10.6084/m9.figshare.9722861.v1
title: Additional file 5 of Comparative transcriptomics of early petal development across four diverse species of Aquilegia reveal few genes consistently associated with nectar spur development

description: genes used in developmental PCA. File format: Tab delimited text file. (TXT 176 kb)
DOI: 10.6084/m9.figshare.9722846
title: Additional file 3 of Comparative transcriptomics of early petal development across four diverse species of Aquilegia reveal few genes consistently associated with nectar spur development

description: genes DE between DS1 and DS5 in all taxa. File format: Tab delimited text file. (TXT 46 kb)
DOI: 10.6084/m9.figshare.9722855.v1
title: Additional file 4 of Comparative transcriptomics of early petal development across four diverse species of Aquilegia reveal few genes consistently associated with nectar spur development

description: genes DE between DS1 and DS5 only in spurred taxa. File format: Tab delimited text file. (TXT 17 kb)
DOI: 10.6084/m9.figshare.9722846.v1
title: Additional file 3 of Comparative transcriptomics of early petal development across four diverse species of Aquilegia reveal few genes consistently associated with nectar spur development

description: genes DE between DS1 and DS5 in all taxa. File format: Tab delimited text file. (TXT 46 kb)
DOI: 10.6084/m9.figshare.9722807
title: Amt/MEP/Rh Superfamily and Rhesus-like protein phylogeny

description: Phylogenetics of Amt/MEP/Rh Superfamily. <br>As described in the methods, the taxon selection is the same as that from Monier et al. 2018, supplemented with proteins from 19 choanoflagellates (Richter et al. 2018). The total number of amino acid positions analyzed was 373. <br>Raw Alignment: mafft.all.ammonium.faFiltered Alignment: trim.seqoverlap60.gt0.5.mafft.all.ammonium.faNewick tree: fasttree.seqoverlap60.gt0.5.mafft.all.ammonium.fa<br><br>Rh protein family, which includes mostly animal proteins, and diverse protists. The phylogeny includes 1,531 sequences and 363 positions.<br><br>Raw Alignment: mafft.rhesus.faFiltered Alignment: trim.seqoverlap60.gt0.5.mafft.rhesus.fa<br>Newick tree: fasttree.seqoverlap60.gt0.5.mafft.rhesus.list.fa
DOI: 10.6084/m9.figshare.9722825
title: Additional file 10 of Comparative transcriptomics of early petal development across four diverse species of Aquilegia reveal few genes consistently associated with nectar spur development

description: gene DE between blade and spur tissue at 3 mm stage. File format: Tab delimited text file. (TXT 45 kb)
DOI: 10.6084/m9.figshare.9722828
title: Additional file 11 of Comparative transcriptomics of early petal development across four diverse species of Aquilegia reveal few genes consistently associated with nectar spur development

description: genes commonly DE in ‘blade’ and ‘spur’ classes, including protein categorization information. File format: Tab delimited text file. (TXT 29 kb)
DOI: 10.6084/m9.figshare.9722807.v1
title: Amt/MEP/Rh Superfamily and Rhesus-like protein phylogeny

description: Phylogenetics of Amt/MEP/Rh Superfamily. <br>As described in the methods, the taxon selection is the same as that from Monier et al. 2018, supplemented with proteins from 19 choanoflagellates (Richter et al. 2018). The total number of amino acid positions analyzed was 373. <br>Raw Alignment: mafft.all.ammonium.faFiltered Alignment: trim.seqoverlap60.gt0.5.mafft.all.ammonium.faNewick tree: fasttree.seqoverlap60.gt0.5.mafft.all.ammonium.fa<br><br>Rh protein family, which includes mostly animal proteins, and diverse protists. The phylogeny includes 1,531 sequences and 363 positions.<br><br>Raw Alignment: mafft.rhesus.faFiltered Alignment: trim.seqoverlap60.gt0.5.mafft.rhesus.fa<br>Newick tree: fasttree.seqoverlap60.gt0.5.mafft.rhesus.list.fa
DOI: 10.6084/m9.figshare.9722801
title: Supporting information: The effectiveness of touchscreen-based attentional bias modification to thin body stimuli on state rumination

description: This is the data set associated with the study "The effectiveness of touchscreen-based attentional bias modification to thin body stimuli on state rumination", provided as .sav file. Further information is available on request.
DOI: 10.6084/m9.figshare.9722825.v1
title: Additional file 10 of Comparative transcriptomics of early petal development across four diverse species of Aquilegia reveal few genes consistently associated with nectar spur development

description: gene DE between blade and spur tissue at 3 mm stage. File format: Tab delimited text file. (TXT 45 kb)
DOI: 10.6092/unibo/amsacta/6462
title: MADFORWATER. WP3 Adaptation of technologies for efficient water management and treated wastewater reuse in agriculture. Task3.2 Engineering innovative irrigation technologies adapted to the target Mediterranean African Countries and to treated wastewater reuse. Subtask3.2.1 Efficient low-pressure mini-sprinkler adapted to treated wastewater

description: The data set consists of experimental data from lab evaluation to characterize droplet-size distribution of new sprinkler and drift/transport mechanism in controlled (i.e. wind tunnel) conditions. This works aims at obtaining an optimal water distribution from a localized irrigation micro-sprinkler. Similar data have been collected on standard irrigation sprinklers, the objective of this MADFORWATER research is to control the droplet size spectrum to minimize drift (smaller droplets carried by the wind) and compaction (bigger droplets that impact on the soil and induce crusting) risks.
DOI: 10.6084/m9.figshare.9722828.v1
title: Additional file 11 of Comparative transcriptomics of early petal development across four diverse species of Aquilegia reveal few genes consistently associated with nectar spur development

description: genes commonly DE in ‘blade’ and ‘spur’ classes, including protein categorization information. File format: Tab delimited text file. (TXT 29 kb)
DOI: 10.6084/m9.figshare.9722804
title: NBBDDD1.dta

description: <b>Data set used in the paper </b><b>The effect of increasing land value capture on the gross value added of the construction industry</b>
DOI: 10.6084/m9.figshare.9722804.v1
title: NBBDDD1.dta

description: <b>Data set used in the paper </b><b>The effect of increasing land value capture on the gross value added of the construction industry</b>
DOI: 10.6084/m9.figshare.9722696
title: Figure 4G (Flotillins promote T cell receptor sorting through a fast Rab5-Rab11 endocytic recycling axis)

description: TCR-GFP + Apex2-GBP TEM images