cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.mevkcn
title: Occurrence Download

description: A dataset containing 449 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000",
 "Geometry POLYGON ((105.610544 14.999999, 179.999961 14.999999, 179.999961 65.08290100000001, 105.610544 65.08290100000001, 105.610544 14.999999))",
 "TaxonKey is Parapriacanthus ransonneti"
 ]
}

 The dataset includes 449 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000904-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18524846
title: Data and code used for paper entitled "The Bear Attack as a Warning: From Clouded Skies to Collapsing Ecosystems"

description: Code and data using for analysis 2025 bear attack hazard in Japan, paper entitled "The Bear Attack as a Warning: From Clouded Skies to Collapsing Ecosystems"
DOI: 10.1594/pangaea.932528
title: Pollen and non-pollen palynomorphs data of Thor_profile from the Gurvan Bogd, Gobi Altai, Mongolia
DOI: 10.1594/pangaea.932534
title: Age determination of Thor profile from the Gurvan Bogd, Gobi Altai, Mongolia
DOI: 10.5281/zenodo.18524845
title: Data and code used for paper entitled "The Bear Attack as a Warning: From Clouded Skies to Collapsing Ecosystems"

description: Code and data using for analysis 2025 bear attack hazard in Japan, paper entitled "The Bear Attack as a Warning: From Clouded Skies to Collapsing Ecosystems"
DOI: 10.1594/pangaea.982496
title: Geochemical analysis of recent marine sediment cores from cruises AHAB04, AHAB05 and M76/1 off Namibia

description: This dataset comprises sedimentary bulk contents of major elements (Total Organic Carbon (TOC), Aluminum (Al), Titanium (Ti), and Phosphorus (P) and trace elements Uranium (U), Barium (Ba), Nickel (Ni), and Zirconium (Zr)) obtained from both marine sediment cores and hinterland samples from Namibia. The marine cores were collected during research cruises AHAB04 and AHAB05 (March 2004) and M76/2 (May 2008) in the Benguela Upwelling System. Hinterland samples were collected from fine-grained outcrops in the Tsauchab River Valley near Sossusvlei and wet-sieved into grain-size fractions &lt;20 µm, 20–63 µm, &gt;63 µm. Total carbon and total inorganic carbon were measured using a carbon/sulfur analyzer (ELTRA CS 580), and TOC was calculated as the difference between total carbon and total inorganic carbon. Aluminum, Ti, P, Zr, U, Ba, Ni were analyzed via wavelength-dispersive X-ray fluorescence analysis (Panalytical Axios Plus). These data provide high-resolution geochemical profiles for the reconstructions of sediment provenance, grain-size effects and depositional conditions on the southeastern Atlantic margin. Full analytical results are given in Gäng et al. (2023): https://doi.org/10.1016/j.gca.2023.03.015.
DOI: 10.1594/pangaea.984032
title: Fatty acid profiles of Calanidae in the northern and southern Benguela Current upwelling system

description: This dataset includes results from lipid analyses and fatty acid profiles of Calanidae collected during cruise M153 with RV Meteor (February 15 to March 28, 2019) and during cruise SO285 with RV Sonne (September 15 to October 7, 2021) with the same sampling scheme in the northern (nBUS) and southern (sBUS) Benguela Upwelling System. The cruises were part of the TRAFFIC (Trophic tRAnsfer eFFICiency in the Benguela Current) project. Samples were retrieved from vertical multinet Midi hauls (200 µm mesh size). The aim was to identify distribution patterns in relation to environmental conditions and the comparison of horizontal, vertical and trophic niches of close-related, similar-sized key copepod species in the BUS.
DOI: 10.1594/pangaea.983970
title: Abundance profiles of Calanidae in the northern and southern Benguela Current upwelling system

description: This dataset includes abundances of Calanidae copepods, i.e. different developmental stages of Calanoides natalis, Calanus agulhensis, Nannocalanus minor, Mesocalanus tenuicornis, Neocalanus gracilis and Neocalanus tonsus, during the research cruise M153 with RV Meteor in the northern (nBUS) and southern (sBUS) Benguela Upwelling System between February 15 and March 28, 2019. The cruise was part of the TRAFFIC (Trophic tRAnsfer eFFICiency in the Benguela Current) project. Samples were retrieved from vertical multinet Midi hauls (200 µm mesh size). The aim was to identify distribution patterns in relation to environmental conditions and the comparison of horizontal, vertical and trophic niches of close-related, similar-sized key copepod species in the BUS.
DOI: 10.1594/pangaea.986712
title: Age model of sediment core MD04-2718
DOI: 10.1594/pangaea.986773
title: Coccolith assemblage of sediment core MD04-2718
DOI: 10.1594/pangaea.986774
title: Planktonic foraminifera assemblage of sediment core MD04-2718
DOI: 10.1594/pangaea.986782
title: Organic matter contents of sediment core MD04-2718
DOI: 10.1594/pangaea.986783
title: Planktonic and benthic foraminifera stable isotopes of sediment core MD04-2718
DOI: 10.1594/pangaea.986789
title: Carbonate content of sediment core MD04-2718
DOI: 10.1594/pangaea.989519
title: Radiosonde raw data measured during POLARSTERN cruise PS138, links to files

description: The meteorological observatory Polarstern continuously performs radiosoundings during times of ship operation. Typically, there is one launch to full altitude at 12 UTC every day. Additionally, there often is a launch with a smaller balloon for forecasting purposes (helicopter operations) around 6 UTC. All data published here is left "as recorded", no quality control was applied.
description: Data files were produced by a proprietary radiosounding system from Vaisala. The format is referred to as "mwx". Technically, the files are zip files comprising several xml-documents.
DOI: 10.1594/pangaea.989542
title: Radiosonde raw data measured during POLARSTERN cruise PS147/2, links to files

description: The meteorological observatory Polarstern continuously performs radiosoundings during times of ship operation. Typically, there is one launch to full altitude at 12 UTC every day. Additionally, there often is a launch with a smaller balloon for forecasting purposes (helicopter operations) around 6 UTC. All data published here is left "as recorded", no quality control was applied.
description: Data files were produced by a proprietary radiosounding system from Vaisala. The format is referred to as "mwx". Technically, the files are zip files comprising several xml-documents.
DOI: 10.1594/pangaea.989544
title: Radiosonde raw data measured during POLARSTERN cruise PS149, links to files

description: The meteorological observatory Polarstern continuously performs radiosoundings during times of ship operation. Typically, there is one launch to full altitude at 12 UTC every day. Additionally, there often is a launch with a smaller balloon for forecasting purposes (helicopter operations) around 6 UTC. All data published here is left "as recorded", no quality control was applied.
description: Data files were produced by a proprietary radiosounding system from Vaisala. The format is referred to as "mwx". Technically, the files are zip files comprising several xml-documents.
DOI: 10.1594/pangaea.992026
title: Benthic biogeochemistry data from RV HEINCKE cruise HE582 to the German Bight, North Sea in late summer 2021

description: This dataset contains data from the RV Heincke cruise HE582 to the German Bight of the North Sea in late summer 2021. The aim of the research was to investigate the source of sedimentary glycan concentrations in subtidal sandy sediments. Glycans represent a substantial fraction of extracellular polymeric substances and may affect flow dynamics in marine sandy sediments. The origin and concentration of glycans in sands remain understudied until today. To gain insights into oxygen supply and glycan concentrations in sandy sediment, we conducted in situ measurements and sampled sediment via a van Veen grab for ex situ investigations. Oxygen penetration depths were determined by a benthic lander, which was deployed for ca. 24h at each station. Chlorophyll a concentrations as an indicator for potentially photosynthetically active sedimentary biomass were derived via extraction with 90% acetone against Sigma Aldrich standards. Glycan concentrations served as indicator for extracellular polymeric substances and were quantified against a glucose standard curve via a phenol sulfuric acid assay after prior sequential glycan extraction (MilliQ, EDTA, NaOH). The final glycan concentrations are referred to per volume of porespace, and therefore given in mmol/l porewater. To investigate if benthic primary producers could be responsible for the extracted sedimentary glycan concentrations, we conducted stable isotope incubations.
DOI: 10.1594/pangaea.55157
title: Atlantic sea surface temperatures during the last glacial maximum (LGM) time slice
DOI: 10.1594/pangaea.733096
title: Stable oxygen and carbon isotope ratios of planktonic foraminifera from sediment core MD99-2339

description: Age model follows Voelker et al. (2006) dataset: doi:10.1594/PANGAEA.465021. For stable oxygen isotope data of Globigerina bulloides see Voelker et al. (2006) data: doi:10.1594/PANGAEA.465024. For stable carbon isotope data of G. bulloides and for oxygen and carbon isotope data of Globigerinoides ruber white see dataset: doi:10.1594/PANGAEA.733104
DOI: 10.1594/pangaea.733101
title: Iron, calcium and titanium abundance in sediment core MD99-2339

description: XRF scanner derived element ratios for the Marine Isotope Stage 1 to 3 record from deep-sea core MD99-2339 in the central Gulf of Cadiz.
DOI: 10.1594/pangaea.733103
title: Reconstruction of sea surface temperature and export productivity of sediment core MD99-2339
DOI: 10.1594/pangaea.930201
title: C, N, pH of different aggregate fractions of a tropical savanna soil amended with organic and mineral amendments

description: Soil samples (0 – 5 cm) were taken from a tropical topsoil at the premises of the University of Ngaoundéré, Ngaoundéré, Cameroon. A field experiment was installed in May 2018, with t0 sampling in December 2017 and in May 2018. Four treatments were implemented: A control receiving no amendment, a mineral control receiving NPK fertiliser (20-10-10), a compost treatment receiving a compost that was prepared from Tithonia diversifolia whole plants at an annual rate of 75 t/ha, and a combined biochar and compost treatment, where compost and biochar prepared from Tithonia diversifolia were co-composted (10 % v/v biochar) and applied at an annual biochar rate of 25 t/ha. Amendments were applied in June 2018 and 2019 to a depth of approximately 10 cm and Sorghum bicolor var. S35 was sown at 0.5 m distance within the rows and 0.5 m distance between the rows approximately two weeks after the amendment. The experimental design was a Latin Square with five field repetitions of each treatment, rendering a total of 20 plots of 2 x 2 m each. Soil samples were taken from the centre of each plot with a small shovel in December of 2017, 2018, and 2019 for dry season sampling, and in May of 2018 and 2019 right before amendment and in June of 2018 and 2019 right before sowing for rainy season sampling. In 2019, a total of four sampling campaigns was carried out in May and June due to additional mesofauna sampling. Samples taken in December 2018 and in December 2019 were dry sieved on site into four different aggregate sizes: 400 – 2000 µm; 200 – 400 µm; 50 – 200 µm; &lt; 50 µm. C and N contents were obtained by grinding air-dried soil samples using a kitchen blender for homogenisation, and then measuring C and N by dry combustion. pH was measured by suspending 5 g of air-dried soil sample in 12.5 mL of either 0.01 M CaCl2 (pHCaCl2), demineralised water (pHH2O), or 1 M KCl (pHKCl). Samples were gently shaken for 2 h, allowed for sedimentation and pH was measured using a digital pH-meter. All measurements were conducted in duplicates. Due to limited sample availability, no pH values could be obtained for aggregate fractions &lt; 400 µm. \nThe field experiment was part of the PhD dissertation project of Laura Sophie Schnee which was carried out in partnership between the Unviersities of Bremen, Germany, and Ngaoundéré, Cameroon.
DOI: 10.1594/pangaea.932811
title: Cheilanthane ratios in Mesoproterozoic to Early Paleozoic rocks

description: This data set contains values on the cheilanthane (tricyclic terpenoids) ratios of C22/C21 and C24/23 from Mesoproterozoic to Silurian rocks of global distribution. Lipid extractions were performed following standard protocols. The yield was contamination-controlled via exterior vs. interior comparison of individual peak concentrations. Values were obtained via integration of multiple-reaction-monitoring (MRM) measurements. In comparing our data of cheilanthane ratios to that reported for younger rocks and oils, we noticed consistently lower C24/C23 values in our samples, suggesting a bimodal character of cheilanthane distribution in time. We tentatively attribute this to the rise of a source of oxidatively decarboxylated cheilanthatriol derived from ferns. Fossil cheilanthanes likely represent a composite mixture of various biological sources, whose secular patterns may record more than the Paleozoic rise of terrestrial plants presented here.
DOI: 10.1594/pangaea.984074
title: Benthic photoquadrats in Comau fjord Dec-2024

description: Subtidal photoquadrats of hard-bottom benthic communities. Fieldwork sampling was performed in December 2024 as part of the CoReA project of Claudio Richter. Six sites where sampled across Comau fjord, covering the upper, middle and lower part of the fjord. The photoquadrats are part of the PhD data of Vicente Villalobos and consist on 10 replicates at each depth (4 per site). By using scuba diving the photos were taken between 5 and 30 meters depth covering the subtidal zone and the benthic communities thriving there. The photos were taken with a Iphone 16 pro camera and a frame of 60x60 cm was used as a reference.
DOI: 10.15468/dl.kp4xw5
title: Occurrence Download

description: A dataset containing 142 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stenocercus modestus"
 ]
}

 The dataset includes 142 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000906-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vp97fn
title: Occurrence Download

description: A dataset containing 198357 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Happywhale - Humpback whale in North Pacific Ocean"
 ]
}

 The dataset includes 198357 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000891-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kfjww7
title: Occurrence Download

description: A dataset containing 29749 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tolmomyias sulphurescens",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2026",
 "Country is Colombia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 29749 records from 202 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000905-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31048632
title: Integrative in silico-in vivo modeling identifies apigenin modulation of TGF-β1/SMAD2 in methotrexate-induced cardiotoxicity

description: Methotrexate (METX) is a widely used chemotherapeutic and immunosuppressive agent, frequently employed as a first-line treatment for various malignancies and autoimmune disorders. Despite its clinical efficacy, METX is known to induce cardiotoxicity primarily through mechanisms involving oxidative stress, inflammation, and apoptosis. Apigenin (API), a natural dietary flavonoid, exhibits potent antioxidant and anti-inflammatory properties. The current study evaluated the protective effects of API against METX-induced cardiotoxicity in mice, focusing on the modulation of transforming growth factor-β (TGF-β)/(SMAD2) signaling. Molecular docking was done to investigate the possible inhibition of TGF-β by API and bioinformatic tools were utilized to investigate the correlation between the target proteins. Male Swiss albino mice were randomly distributed to four groups: Group I: a saline group, Group II: a METX control group (20 mg/kg, per week), Group III: METX + API (40 mg/kg, per day) and Group IV: METX + API (80 mg/kg, per day, <i>via</i> oral gavage); the study continued for three weeks. Our findings suggest that API administration significantly mitigated METX cardiotoxicity and serum CK-MB, likely through attenuation of the inflammatory cytokines (NF-κB, IL-1β, TNF-α, and IL-6) and suppression of cardiac TGF-β/SMAD2 signaling. The congruence between bioinformatics and experimental validation findings strongly highlighted API as a promising therapeutic candidate for alleviating METX cardiotoxicity. While the current data reveals key underlying molecular mechanisms for API′s cardioprotective effect, further comprehensive studies across diverse cardiotoxicity models are essential to fully elucidate cardioprotective effect of API.
DOI: 10.6084/m9.figshare.31048632.v1
title: Integrative in silico-in vivo modeling identifies apigenin modulation of TGF-β1/SMAD2 in methotrexate-induced cardiotoxicity

description: Methotrexate (METX) is a widely used chemotherapeutic and immunosuppressive agent, frequently employed as a first-line treatment for various malignancies and autoimmune disorders. Despite its clinical efficacy, METX is known to induce cardiotoxicity primarily through mechanisms involving oxidative stress, inflammation, and apoptosis. Apigenin (API), a natural dietary flavonoid, exhibits potent antioxidant and anti-inflammatory properties. The current study evaluated the protective effects of API against METX-induced cardiotoxicity in mice, focusing on the modulation of transforming growth factor-β (TGF-β)/(SMAD2) signaling. Molecular docking was done to investigate the possible inhibition of TGF-β by API and bioinformatic tools were utilized to investigate the correlation between the target proteins. Male Swiss albino mice were randomly distributed to four groups: Group I: a saline group, Group II: a METX control group (20 mg/kg, per week), Group III: METX + API (40 mg/kg, per day) and Group IV: METX + API (80 mg/kg, per day, <i>via</i> oral gavage); the study continued for three weeks. Our findings suggest that API administration significantly mitigated METX cardiotoxicity and serum CK-MB, likely through attenuation of the inflammatory cytokines (NF-κB, IL-1β, TNF-α, and IL-6) and suppression of cardiac TGF-β/SMAD2 signaling. The congruence between bioinformatics and experimental validation findings strongly highlighted API as a promising therapeutic candidate for alleviating METX cardiotoxicity. While the current data reveals key underlying molecular mechanisms for API′s cardioprotective effect, further comprehensive studies across diverse cardiotoxicity models are essential to fully elucidate cardioprotective effect of API.
DOI: 10.15468/dl.se8aew
title: Occurrence Download

description: A dataset containing 208 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000",
 "Geometry POLYGON ((105.610544 14.999999, 179.999961 14.999999, 179.999961 65.08290100000001, 105.610544 65.08290100000001, 105.610544 14.999999))",
 "TaxonKey is Monodactylus argenteus"
 ]
}

 The dataset includes 208 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000908-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-5528
title: dw_Volume74
DOI: 10.5517/ccdc.csd.cc2qvxr8
title: CCDC 2528321: Experimental Crystal Structure Determination

description: Related Article: Chenghao Duan|2026|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25549/whit-c170-5532
title: dw_Volume75
DOI: 10.15468/dl.2cz2zh
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Porthidium yucatanicum (Smith, 1941)",
 "HasCoordinate is TRUE",
 "Year is greater than or equal to 1850",
 "Year is less than or equal to 2014"
 ]
}

 The dataset includes 53 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0287086-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ruknmb
title: Occurrence Download

description: A dataset containing 47338 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Piranga bidentata Swainson, 1827"
 ]
}

 The dataset includes 47338 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0287095-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2pxa81
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001562-150330110031120/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y86jqx
title: Occurrence Download

description: A dataset containing 622747 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((98.39355 6.5582,115.18066 6.5582,115.18066 24.66948,105.4248 24.66948,98.39355 24.66948,98.39355 6.5582))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 622747 records from 343 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0287283-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c8nvmo
title: Occurrence Download

description: A dataset containing 1667972912 species occurrences available in GBIF matching the query:
{ }

 The dataset includes 1667972912 records from 19317 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027830-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.