cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.6cc27/1
title: juvskp_data_for_bl

description: Juveniles and Non-breeder Adults king penguins diving parameters by weeks for two different deployment years (2013/2014 and 2014/2015)
DOI: 10.5061/dryad.6p1c4/1
title: Genotyping data from 246 loci

description: The file contains the SNP genotyping data for all loci used in McAssey et al., 2016 BMC Plant Biology. The first tab contains the data where rows contain individuals and every two columns represent the diploid genotype. The second tab contains the identity of the polymorphic nucleotides at each locus. The third tab contains the marker names as described in Bachlava et al., 2012 PLoS ONE.
DOI: 10.5061/dryad.80mq6/1
title: Toscano_et_al_final_densities

description: Initial and final densities of all animals used in experiments. Experiment was run in 3 temporal blocks.
DOI: 10.5061/dryad.80mq6/2
title: Toscano_et_al_copepod_reproduction_data

description: Adult copepod egg production data. Experiment was run in 3 temporal blocks.
DOI: 10.5061/dryad.8b063/1
title: monthly_home_range_size_31Oct16

description: Estimates of monthly home range size for individual GPS-collared badgers, both vaccinated and unvaccinated.
DOI: 10.5061/dryad.96cp2/1
title: Anonymized data De Meester et al. Plos One 2016

description: Clean & anonymized datafile De Meester et al. Plos One 2016
DOI: 10.5061/dryad.d20g3/1
title: Location of seed mimics in the soil

description: The depths of seed mimics recovered from soil beneath mesocosms during 2012 experiments
DOI: 10.5061/dryad.dj782/1
title: Figure_1A--source_data

description: Genome-wide nucleosome tag coverage of TBP-FRB. The no RAP and +RAP datasets represent the normalized averages of 4 and 5 replicates, respectively. Data files are formatted for the Integrated Genome Browser.
DOI: 10.5061/dryad.dj782/2
title: Figure_1B--source_data

description: Genome-wide nucleosome tag coverage of no FRB. The dataset represents the normalized averages of 3 replicates. Data files are formatted for the Integrated Genome Browser.
DOI: 10.5061/dryad.dp4kb/1
title: obs_delay_summary

description: Summary statistics of raw simulation data. Stochastic simulations created via Gillespe's direct method using SIR model with time-varying transmission. Raw data is 7.2 million rows, 1.2 gb. Please email Chris to arrange ftp of raw data. Column heading meanings in tab 1 (metadata)
DOI: 10.5061/dryad.dp4kb/2
title: kl_divergence

description: Kullback-Leibler divergence for difference (in bits) between observed and expected values of bifurcation delay. Observed values come from stochastic simulations, expected values come from analytic derivations. Metadata located on first tab ('metadata').
DOI: 10.5061/dryad.gs0gv/2
title: Haponskietal_partula_MLtree_matrices

description: .zip archive contains all ddRAD and mtDNA COI matrices used to build maximum likelihood trees in RAxML and presented in Haponski et al.
DOI: 10.5061/dryad.gs0gv/3
title: Haponskietal_partula_bayestree_matrices

description: .zip archive contains all ddRAD and mtDNA COI matrices used to generate Bayesian trees in MrBayes and presented in Haponski et al.
DOI: 10.5061/dryad.jh52n/1
title: raw data Fig1

description: Quantification of abdominal pigmentation in w1118 females grown at 18°C, 25°C and 29°C.
DOI: 10.5061/dryad.jh52n/2
title: raw data Fig2

description: Expression of pigmentation genes in abdominal epidermis of female pharates and adults grown at 18°C and 29°C
DOI: 10.5061/dryad.jh52n/3
title: raw data Fig4 and S2Fig

description: Quantification of abdominal pigmentation of tan mutant and control females grown at 18°C, 25°C and 29°C.
DOI: 10.5061/dryad.jh52n/4
title: raw data Fig5

description: Quantification of GFP in abdominal segments of t_MSE-nEGFP females grown at 18°C and 29°C
DOI: 10.5061/dryad.jh52n/5
title: raw data Fig6

description: FAIRE-qPCR, ChIP for H3K27ac, ChIP for H3K4me3 and IP mock
DOI: 10.5061/dryad.jh52n/6
title: raw data Fig8 and S6Fig

description: tan relative expression in control females and trx RNAi females, ChIP for H3K4me3 in control females and trx RNAi females, abdominal pigmentation quantification in control females (w1118) and females mutant for trx.
DOI: 10.5061/dryad.jh52n/7
title: raw data S3Fig

description: GFP quantification in abdominal segments of ebony-nEGFP females grown at 18°C and 29°C
DOI: 10.5061/dryad.jh52n/8
title: raw data S4Fig

description: Relative expression of vg and CG12119 in abdominal epidermis of w1118 females grown at 18°C and 29°C
DOI: 10.5061/dryad.jh52n/9
title: raw data S5Fig

description: IP H3/input, IP H3K27ac/Input and IP H3K4me3/IP H3 in abdominal epidermis of females grown at 18°C and 29°C
DOI: 10.5061/dryad.m64s2/1
title: Darabant et al 2016 JAE ground_veg_cover

description: This file contains data on the ground cover (%) of Cymbopogon flexuosus and Chromolaena odorata assessed in experimental plots at various point in time
DOI: 10.5061/dryad.m64s2/2
title: Darabant et al 2016 JAE LG_biomass_oil_citral

description: This file contains data on Cympbopogon flexuosus biomass yield, essential oil yield and essential oil citral content assessed in experimental plots at various points in time.
DOI: 10.5061/dryad.t3j7m/1
title: Triops newberryi transcriptome annotations

description: An excel file containing all of the functional characterizations from the different annotation databases including, Swiss-Prot, Pfam-A, TIGRFAM, SUPERFAMILY.
DOI: 10.5061/dryad.t3j7m/2
title: edgeR R-script

description: An R file including the code used to run the differential expression analysis in the package edgeR.
DOI: 10.5061/dryad.t3j7m/3
title: Triops newberry transcriptome read counts

description: An excel file containing the raw read counts for the contigs identified by the annotations as coding sequences. These read counts are the input for the edgeR package to perform differential gene expression analysis.
DOI: 10.5061/dryad.t3j7m/4
title: Triops newberryi CateGOrizer results

description: An excel file containing the results from the program CateGOrizer. The file indicates the GO class id, term and how many contigs were classified under a specific GO term. This raw data was used to make Figure 1 in the Horn et al. manuscript.
DOI: 10.5061/dryad.tk922/5
title: Appendix S1_specimens list
DOI: 10.17632/smb69k52st.1
title: Reference Surface Reflectivity for Mars at 1064 nm and Data for Recalibration of MOLA Passive Radiometry

description: The dataset consists of a map of surface reflectivity at 1064 nm for Mars (finalreferencemap) mapped in eastward longitude-latitude coordinates and the necessary data to recalibrate MOLA passive radiometry (uncalib_reflect and uncalib_reflect_bias). uncalib_reflect is the reflectivity inferred from Minnaert-corrected passive radiometry data for 10 albedo regions on Mars. uncalib_reflect_bias is the estimated reflectivity bias relative to Hubble Space Telescope analysis of uncalib_reflect.
DOI: 10.5061/dryad.0pq4t.1
title: Data from: Plant-herbivore interactions: silicon concentration in tussock sedges and population dynamics of root voles
DOI: 10.5061/dryad.0pq4t.2
title: Data from: Plant-herbivore interactions: silicon concentration in tussock sedges and population dynamics of root voles
DOI: 10.5061/dryad.0pq4t.2/1.2
title: Appendix S3

description: Raw data for the model depicted in Figure 1
DOI: 10.5061/dryad.0pq4t.2/2.2
title: Appendix S4

description: Raw data for the model depicted in Table 2
DOI: 10.5061/dryad.0pq4t.2/3.2
title: Appendix S5

description: Raw data for the model depicted in Figure 2
DOI: 10.5061/dryad.0pq4t.2/4.2
title: Appendix S6

description: Raw data for the model depicted in Table 3
DOI: 10.5061/dryad.17hr9/1
title: DDRAD seq protocol

description: Here we provide the step by step protocol for library prep.
DOI: 10.5061/dryad.17hr9/2
title: parse_barcodes768

description: scripts for parsing barcodes
DOI: 10.5061/dryad.17hr9/3
title: pairwise differences - genotype and phenotype

description: These are the pairwise differences in genome-wide genomic divergence and phenotype between 8 populations of barn swallows.
DOI: 10.5061/dryad.17hr9/4
title: Hirundo rustica genotype probabilities

description: Genotype probabilities associated with the data analyzed in this study.
DOI: 10.5061/dryad.1tc43/1
title: SBE First Decade Survival and Growth

description: This ZIP file contains three data sets needed to reproduce the models and figures presented in the associated research paper. One data set for tree survival, one for tree growth and a third for species traits. The data sets provided here have already been prepared, meaning they are in the same form as they were analysed for the paper. The R code needed to reproduce the research results can be found as supplementary material for the paper. For descriptions of columns in each data set, see the ReadMe.
DOI: 10.5061/dryad.26605/1
title: ROE DEER GPS DATA

description: CLEANED ROE DEER GPS DATA. (tab-separated .txt file). ## no locations during migration ## no duplicates ## no first 24 hrs after capture ## positions are not subsampled to every 6th hour ## Coordinates in WGS84 UTM32N ## Animals collared and data collected by The Norwegian Institute for Nature Research (NINA), for more information see http://scandlynx.nina.no/
DOI: 10.5061/dryad.26605/2
title: Risk map hunters

description: RISK TO ROE DEER OF BEING KILLED BY HUNTER. (Georeferenced tiff raster with projection WGS84 UTM32N) ## Study area Hallingdal in Southern Norway ##Map units are "standardized risk"
DOI: 10.5061/dryad.26605/3
title: Risk map lynx

description: RISK TO ROE DEER OF BEING KILLED BY LYNX. (Georeferenced tiff raster with projection WGS84 UTM32N) ## Study area Hallingdal in Southern Norway ##Map units are "standardized risk"
DOI: 10.5061/dryad.282f6/1
title: Models 1a,b & 2, Fig.2

description: Data file corresponding to Model numbers 1 a,b and 2, Figure 2, Table 1.
DOI: 10.5061/dryad.2nh26/1
title: NIGPAS159413

description: Scanned file of NIGPAS159413 (slab)
DOI: 10.5061/dryad.2nh26/2
title: NIGPAS159414

description: Scanned file of NIGPAS159414 (thin section)
DOI: 10.5061/dryad.2nh26/3
title: NIGPAS159415

description: Scanned file of NIGPAS159415 (thin section)
DOI: 10.5061/dryad.2nh26/4
title: NIGPAS159416

description: Scanned file of NIGPAS159416 (thin section)
DOI: 10.5061/dryad.3j33t/1
title: Genotypic and ecological dataset for Gerzabek et al. (2017) J Ecol
DOI: 10.5061/dryad.44pf8/1
title: Supporting information
DOI: 10.5061/dryad.44pf8/2
title: XML files for all analyses
DOI: 10.5061/dryad.71mn5/1
title: Fossil time series

description: Zip file containing 450 fossil time series.
DOI: 10.5061/dryad.71mn5/2
title: R script Tempo and mode

description: R script for analyzing the data file 'tempo_and_mode.csv'.
DOI: 10.5061/dryad.71mn5/3
title: tempo_and_mode

description: File containing the results of the analyses of the 450 time series, e.g., maximum likelihood estimates of model parameters for the modes Stasis, Random walk and Directional change, Akaike weights, estimates of net evolution, distance traveled in morphospace etc.
DOI: 10.5061/dryad.71mn5/4
title: dist.in.morphospace

description: R function that calculates the measures of evolution used in the paper 'Tempo does not correlate with mode in the fossil record'.
DOI: 10.5061/dryad.76m54/1
title: YeetalEvolutiondataAug_2016

description: Excel file containing all data.  Separate experiments are on different tabs.
DOI: 10.5061/dryad.76qt1/1
title: Egg mass data from Japanese quail

description: See associated Read Me file
DOI: 10.5061/dryad.76qt1/2
title: Hatching success data for Japanese quail eggs

description: See ReadMe file
DOI: 10.5061/dryad.76qt1/3
title: Morphology data for Japanese quail

description: See ReadMe file
DOI: 10.5061/dryad.76qt1/4
title: Respirometry data for adult Japanese quail
DOI: 10.5061/dryad.8b063/2
title: nightly_distances_travelled_31Oct16

description: Distances travelled each night by individual GPS-collared badgers, both vaccinated and unvaccinated. Restricted to nights with complete data, i.e. no locations missed or excluded by filtering.
DOI: 10.5061/dryad.8b063/3
title: trespassing_31Oct16

description: Indication of whether, for each night of tracking, individual GPS-collared badgers (both vaccinated and unvaccinated) were located within the territory of another social group.
DOI: 10.5061/dryad.8b063/4
title: RBCT_bait_return_distances_31Oct16

description: Estimates of badger home range size from areas with and without culling, within the Randomised Badger Culling Trial (RBCT)
DOI: 10.5061/dryad.c18hh/1
title: Data San-Jose et al. 2017
DOI: 10.5061/dryad.d20g3/2
title: Beetle species with traits in 2012 mesocosms

description: Dung beetle species recovered from mesocosms during 2012 experiments with continuous and categorical trait information
DOI: 10.5061/dryad.d20g3/3
title: Beetles species with traits in 2014 mesocosms

description: Species list with continuous and categorical trait information of dung beetles recovered from 2014 mesocosm experiments
DOI: 10.5061/dryad.d20g3/4
title: Seedling emergence and survival within germination plots

description: The emergence and survival of seeds planted at various depths, either with or without dung
DOI: 10.5061/dryad.d20g3/5
title: Seedling emergence and survival within mesocosms

description: The emergence and survival success of seeds buried by dung beetles
DOI: 10.5061/dryad.dj782/3
title: Figure_1--figure_supplement_8_source_data

description: Genome-wide nucleosome tag coverage of RPB1-FRB. The dataset represents the normalized averages of 3 replicates. Data files are formatted for the Integrated Genome Browser.
DOI: 10.5061/dryad.dj782/4
title: Figure_3A--source_data

description: Genome-wide nucleosome tag coverage of SWC5-FRB. The dataset represents the normalized averages of 2 replicates.  Data files are formatted for the Integrated Genome Browser.
DOI: 10.5061/dryad.dj782/5
title: FIgure_4A--source_data

description: Genome-wide nucleosome tag coverage of INO80-FRB. The dataset represents the normalized averages of 2 replicates. The data files are formatted for visualization using the Integrated Genome Browser.
DOI: 10.5061/dryad.dj782/6
title: Figure_3D--source_data

description: Genome-wide nucleosome tag coverage of SWC5-FRB TBP-FRB. The dataset represents the normalized averages of 2 replicates. Data files are formatted for the Integrated Genome Browser.
DOI: 10.5061/dryad.dj782/8
title: FIgure_6E_6F--source_data

description: Genome-wide nucleosome tag coverage of TBP-FRB (chromatin under-digested during the MNase treatment). The dataset represents the normalized averages of 2 replicates.  Data files are formatted for visualization using the Integrated Genome Browser.
DOI: 10.5061/dryad.f7h12/1
title: CLABSIsurvey2

description: Data file including the responses to the CLABSI survey per country. The survey explores practices in CLABSI preventive actions and measurement, but also attitudes towards measurement of outcomes of these preventive activities. For confidentiality reasons, 100 records from 46 countries having provided less than 5 replies have been removed from the dataset. This dataset therefore has 3,307 records from 49 different countries.
DOI: 10.5061/dryad.g7599/1
title: PBA_Data_PROCB_DRYAD_Revised

description: All raw data from beetle trap experiments, arena experiments, SPME fiber analysis, and alarm pheromone bioassays.
DOI: 10.5061/dryad.j29f5/1
title: Meek_et_al_EandE_LocusMapNamesAndSequence

description: File contains the Sequence ID and corresponding Map ID for loci used in the linkage map. The sequence provided is for one of the two alleles at each locus.
DOI: 10.5061/dryad.j29f5/2
title: Meek_et_al_EandE_Sequence_Data

description: File contains the sequences for the 24,198 SNP loci discovered. Sequence names are followed by "_1" or "_2" to denote the two different alleles of the same locus.
DOI: 10.5061/dryad.j29f5/3
title: Meek_et_al_EandE_Seq_Count_data

description: File contains the sequence counts for each individual in the RAD-seq study at each SNP locus, showing the counts for both allele 1 and allele 2, separated by a comma.
DOI: 10.5061/dryad.jh52n/10
title: raw data S6Fig

description: Relative expression of pigmentation genes in control females (RNAi GFP) and RNAi trx females
DOI: 10.5061/dryad.ng8mn/1
title: KLoSA2012_subdata_agegenderemploy_BMI

description: This data file includes a subset from the KLoSA 2012 data. This data was used in the study entitled "Age and gender differential relationship between employment status and body mass index among middle aged and elderly adults: A cross-sectional study" that was published in BMJ Open. In the data set, variables coded as following: age_gr (0: &lt;60; 1: 60~74; 2: &gt;=75), alcohol (0: normal; 1: addictive or excessive drinking), w04edu (1&lt;=elementary school grad.; 2: junior high grad.; 3: high school grad.; 4: college grad. or higher).
DOI: 10.5061/dryad.p153v/1
title: Numbers of recruits and species
DOI: 10.5061/dryad.q586c/1
title: Tadpole_occ

description: Tadpole detection/nondetection data for 8 species in 3 microhabitats during the wet and dry season, encompassing a period before and after chytrid arrival.
DOI: 10.5061/dryad.t8j15/1
title: Jorissen et al 2016 RAW data
DOI: 10.5061/dryad.tk273/1
title: Data on cage-side preference and latency to move in experiment 1

description: Please see README file for variable descriptions.
DOI: 10.5061/dryad.tk273/2
title: Responses to audio playback of predator vs non-predator

description: Please see README file for variable descriptions.
DOI: 10.5061/dryad.tk922/6
title: TableS1_timeline_descriptions

description: Chronology of combinations under Sesuvium and Cypselea.
DOI: 10.17632/smb69k52st.2
title: Reference Surface Reflectivity for Mars at 1064 nm and Data for Recalibration of MOLA Passive Radiometry

description: The dataset consists of a map of surface reflectivity at 1064 nm for Mars (finalreferencemap) mapped in eastward longitude-latitude coordinates and the necessary data to recalibrate MOLA passive radiometry (uncalib_reflect and uncalib_reflect_bias). uncalib_reflect is the reflectivity inferred from Minnaert-corrected passive radiometry data for 10 albedo regions on Mars. uncalib_reflect_bias is the estimated reflectivity bias relative to Hubble Space Telescope analysis of uncalib_reflect. This data is stored in a version 3 netCDF file.
DOI: 10.5061/dryad.1182k/1
title: Weather and Gremmeiella in Sweden
DOI: 10.5061/dryad.1g626/2
title: Electronic supplementary material S2
DOI: 10.5061/dryad.1g626/4
title: Electronic supplementary material S1
DOI: 10.5061/dryad.21sj8/1
title: Simulated ecosystem services indicators with the ForClim model

description: List of ecosystem service indicator values for each simulated year (2010-2100/2150) for representative stand types (RST) in the four case study areas (CSA). The data were generated with the climate-sensitive forest succession model FORCLIM, an open-access software which is available for download through the Chair of Forest Ecology at ETH Zürich (https://uwis-server102.ethz.ch/openaccess/). Column headings are described in the associated ReadMe file.
DOI: 10.5061/dryad.282f6/10
title: Fig. S3

description: Survival data corresponding to Fig. S3.
DOI: 10.5061/dryad.282f6/2
title: Model 3a, Fig. 3a

description: Data corresponding to Model 3a, Figure 3a and Table 2.
DOI: 10.5061/dryad.282f6/3
title: Model 3b, Fig. 3b

description: Data corresponding to Model 3b, Figure 3b and Table 2.
DOI: 10.5061/dryad.282f6/4
title: Model 4a, Fig. 4a

description: Data corresponding to Model 4a, Figure 4a and Table 3.
DOI: 10.5061/dryad.282f6/5
title: Model 4b, Fig. 4b

description: Data corresponding to Model 4b, Figure 4b and Table 3
DOI: 10.5061/dryad.282f6/6
title: Model 5, Fig. 5

description: Data corresponding to Model 5, Figure 5 and Table 4.
DOI: 10.5061/dryad.282f6/7
title: Model 6a, Fig. 3

description: Data corresponding to Model 6a, Figure 3 and Table 4.
DOI: 10.5061/dryad.282f6/8
title: Model 6b, Fig. 3

description: Data corresponding to Model 6b, Figure 3, Table 4.
DOI: 10.5061/dryad.282f6/9
title: Fig. S1, S2 & Appendix S1

description: Data corresponding to Figures S1 & S2 and mating data in Appendix S1.
DOI: 10.5061/dryad.2b222/1
title: Fitness values for selected and control populations

description: This .xlsx file contains the fitness values for six selection regimes (20 replicate populations in each), assayed in 5 assay environments. Fitness is measured in two different ways, namely maximum growth rate and maximum density. Each selection X assay X replicate has two independent measurements. We also assayed the ancestors in all the assay environments,
DOI: 10.5061/dryad.2nh26/5
title: NIGPAS159417

description: Scanned file of NIGPAS159417 (thin section)
DOI: 10.5061/dryad.2nh26/6
title: SCALE for NIGPAS159414-159417

description: SCALE for NIGPAS159414-159417
DOI: 10.5061/dryad.2nh26/7
title: Photomicrograph_Xianella

description: Photomicrographs of Xianella. File names indicate: NIGPAS15941X(sample number)-XX(photomicrograph number)-X8(scale). Check attached scale file for size of photomicrographs.
DOI: 10.5061/dryad.3045r/1
title: TIT DATA_PAKANEN ET AL

description: Capture-recapture data with individual covariates.
DOI: 10.5061/dryad.37dv8/1
title: Aphis craccivora suitability for Harmonia axyridis

description: Data from experiments testing intrinsic suitability of Aphis craccivora to Harmonia axyridis.  Each experiment is a separate tab (5 tabs total).  For all, aphidtrt indicates original plant of aphid collection.  Current rearing plant indicated by tab for each experiment. For larval experiments, each column represents developmental status per subsequent day of the experiment (1= 1st instar, 2= 2nd instar, 3=3rd instar, 4=4th instar, 5=pupa, 6=adult, x = dead, a = alive but instar not recorded).  Columns all the way to the right indicate total survival time (in days), whether the individual was censored (alive =1) or not censored (dead =0) at the end of the experiment, and if the individual died before the end of the experiment, it's instar at death (individuals still alive are indicated with an x).  For adult experiment, everything the same except columns indicate number of eggs per day, with 0 indicating an adult that was alive but didn't lay eggs, and x indicating an adult that had died.  Total eggs in column at the right, plus survival (in days), and whether the beetle was alive (censor = 1) or dead (censor = 0) at the end of the experiment. For the Arsenophonus experiment, aphids either were infected with Arsenophonus (=1), or from colonies that did not have Arsenophonus (=0).
DOI: 10.5061/dryad.3dk6r/1
title: Reneerkens et al 2016 Ecol&Evol -Clutch survival

description: Table of histories of Sanderling (Calidris alba) clutches in Zackenberg, northeast Greenland, 2007-2013. Columns contain data about (1) “Date found”, the day of the breeding season on which the nest was found; (2) “Date last checked when alive”, the last day the clutch was checked when alive; (3) “Date last checked”, the last day the clutch was checked; (4) “Fate”, the fate of the nest (0 = successfully hatched, 1 = depredated) and (5) “Hatch date”, the date of hatch, which was observed in case the clutch was successful, or estimated based on egg flotation, in case the clutch was not successful. Dates are scaled such that 10 June is day 1, the earliest date at which a clutch was found. Further information is found in the methods section of the publication.
DOI: 10.5061/dryad.3dk6r/2
title: Reneerkens et al 2016 Ecol&Evol - Arthropod abundance

description: Table of arthropod abundance in Zackenberg in the years 1996-2013 (excluding 2010).  Columns contain data about Year, Date (day of year), and the number of individual arthropods per pitfall trap per day for the orders Aranea, Diptera, Hemiptera, Hymenoptera, Lepidoptera and Thysanoptera. Further information is found in the methods section of the publication. Data have been collected within the BioBasis programme of the Greenland Ecosystem Monitoring (GEM) and are publicly available via http://data.g-e-m.dk/.