cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gyvksy
title: Occurrence Download

description: A dataset containing 124 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eleutherodactylus cooki"
 ]
}

 The dataset includes 124 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046079-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dtfkmz
title: Occurrence Download

description: A dataset containing 3624 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Callosciurus finlaysonii"
 ]
}

 The dataset includes 3624 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046080-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gxgv4r
title: Occurrence Download

description: A dataset containing 1910 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "IucnRedListCategory is one of (EX, EW, CR, EN, VU)",
 "TaxonKey is one of (Animalia [GBIF Backbone Taxonomy])",
 "GadmGid is one of (COL)",
 "StateProvince is one of (Putumayo)"
 ]
 }
 ]
}

 The dataset includes 1910 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046081-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p4bw5j
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-113.0688 29.54913, -112.9188 29.54913, -112.9188 29.69913, -113.0688 29.69913, -113.0688 29.54913))"
 ]
}

 The dataset includes 145 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046082-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pbvy4s
title: Occurrence Download

description: A dataset containing 32828 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Month is September",
 "StateProvince is New Brunswick",
 "Year 2023-2023"
 ]
}

 The dataset includes 32828 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046083-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b6zz4e
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudoarrox caldasi"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046086-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.20290599
title: Genetic and morphological data of <i>Glandirana</i> in East Asia

description: <br>
<strong>Supplimentary table 1_Locality names.xlsx</strong>: Locality names, accession numbers for mtDNA analyses, and sample size of morphological analyses. 
<br>
<strong>Supplimentary table 2_Measurements.xlsx</strong>: Raw data (mm) of morphometric measurements. 
<br>
<strong>12S16S_alignmentNEXUS.nex</strong>: NEXUS data of alignments of 12S rRNA and 16S rRNA of mtDNA (ambiguous regions eliminated through Gblocks).
 <br>
<strong>12S16S_alignmentPHYLIP.phy</strong>: PHYLIP data of alignments of 12S rRNA and 16S rRNA of mtDNA (ambiguous regions eliminated through Gblocks).
 <br>
<strong>12S16S_ML_besttree.nwk</strong>: The ML besttree inferred from  12S rRNA and 16S rRNA in mtDNA saved in NEWICK format. 
<br>
<strong>12S16S_Bayes_besttree.nex</strong>: The Bayesian besttree inferred from 12S rRNA and 16S rRNA in mtDNA saved in NEWICK format.<br>
 <br>
<strong>cytb_alignment.phy</strong>: PHYLIP data of alignments of Cytochrome b of mtDNA  
<br>
<strong>cytb_ML_besttree.nwk</strong>: The ML besttree inferred from Cytochrome b in mtDNA saved in NEWICK format. <br>

<strong>SNP_ML_besttree.nwk</strong>: The ML besttree inferred from SNPs saved in NEWICK format.
<br>
<strong>SNP_alignment.phy</strong>: The PHYLIP data of SNPs examined for re-construction of phylogenetic tree.
<br>
<strong>SNP_structure_format</strong>: The STRUCTURE data of SNPs examined for STRUCTURE and PCA analyses.<br>
<br>
<strong>Raw_data_of_MIGseq.zip</strong>: Raw data of SNPs (MIGseq) examined in this study.<br>
<br>
 <br>
DOI: 10.6084/m9.figshare.20290599.v2
title: Genetic and morphological data of <i>Glandirana</i> in East Asia

description: <br>
<strong>Supplimentary table 1_Locality names.xlsx</strong>: Locality names, accession numbers for mtDNA analyses, and sample size of morphological analyses. 
<br>
<strong>Supplimentary table 2_Measurements.xlsx</strong>: Raw data (mm) of morphometric measurements. 
<br>
<strong>12S16S_alignmentNEXUS.nex</strong>: NEXUS data of alignments of 12S rRNA and 16S rRNA of mtDNA (ambiguous regions eliminated through Gblocks).
 <br>
<strong>12S16S_alignmentPHYLIP.phy</strong>: PHYLIP data of alignments of 12S rRNA and 16S rRNA of mtDNA (ambiguous regions eliminated through Gblocks).
 <br>
<strong>12S16S_ML_besttree.nwk</strong>: The ML besttree inferred from  12S rRNA and 16S rRNA in mtDNA saved in NEWICK format. 
<br>
<strong>12S16S_Bayes_besttree.nex</strong>: The Bayesian besttree inferred from 12S rRNA and 16S rRNA in mtDNA saved in NEWICK format.<br>
 <br>
<strong>cytb_alignment.phy</strong>: PHYLIP data of alignments of Cytochrome b of mtDNA  
<br>
<strong>cytb_ML_besttree.nwk</strong>: The ML besttree inferred from Cytochrome b in mtDNA saved in NEWICK format. <br>

<strong>SNP_ML_besttree.nwk</strong>: The ML besttree inferred from SNPs saved in NEWICK format.
<br>
<strong>SNP_alignment.phy</strong>: The PHYLIP data of SNPs examined for re-construction of phylogenetic tree.
<br>
<strong>SNP_structure_format</strong>: The STRUCTURE data of SNPs examined for STRUCTURE and PCA analyses.<br>
<br>
<strong>Raw_data_of_MIGseq.zip</strong>: Raw data of SNPs (MIGseq) examined in this study.<br>
<br>
 <br>
DOI: 10.6084/m9.figshare.20290599.v1
title: Genetic and morphological data of Glandirana in East Asia

description: <br>
<strong>Supplimentary table 1_Locality names.xlsx</strong>: Locality names, accession numbers for mtDNA analyses, and sample size of morphological analyses. 
<br>
<strong>Supplimentary table 2_Measurements.xlsx</strong>: Raw data (mm) of morphometric measurements. 
<br>
<strong>12S16S_alignmentNEXUS.nex</strong>: NEXUS data of alignments of 12S rRNA and 16S rRNA of mtDNA (ambiguous regions eliminated through Gblocks).
 <br>
<strong>12S16S_alignmentPHYLIP.phy</strong>: PHYLIP data of alignments of 12S rRNA and 16S rRNA of mtDNA (ambiguous regions eliminated through Gblocks).
 <br>
<strong>12S16S_ML_besttree.nwk</strong>: The ML besttree inferred from  12S rRNA and 16S rRNA in mtDNA saved in NEWICK format. 
<br>
<strong>12S16S_Bayes_besttree.nex</strong>: The Bayesian besttree inferred from 12S rRNA and 16S rRNA in mtDNA saved in NEWICK format.<br>
 <br>
<strong>cytb_alignment.phy</strong>: PHYLIP data of alignments of Cytochrome b of mtDNA  
<br>
<strong>cytb_ML_besttree.nwk</strong>: The ML besttree inferred from Cytochrome b in mtDNA saved in NEWICK format. <br>

<strong>SNP_ML_besttree.nwk</strong>: The ML besttree inferred from SNPs saved in NEWICK format.
<br>
<strong>SNP_alignment.phy</strong>: The PHYLIP data of SNPs examined for re-construction of phylogenetic tree.
<br>
<strong>SNP_structure_format</strong>: The STRUCTURE data of SNPs examined for STRUCTURE and PCA analyses.<br>
<br>
<strong>Raw_data_of_MIGseq.zip</strong>: Raw data of SNPs (MIGseq) examined in this study.<br>
<br>
 <br>
DOI: 10.15468/dl.hes23m
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-112.9188 29.54913, -112.7688 29.54913, -112.7688 29.69913, -112.9188 29.69913, -112.9188 29.54913))"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046088-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30654020
title: Analysis scripts

description: This is R scripts used for data analysis.<br>
DOI: 10.6084/m9.figshare.30654020.v3
title: Analysis scripts

description: This is R scripts used for data analysis.<br>
DOI: 10.6084/m9.figshare.30654020.v2
title: Analysis scripts

description: This is R scripts used for data analysis.
DOI: 10.21227/eyg4-v467
title: "Bengali Real and Deepfake Audio Dataset for Deepfake Detection"

description: "Synthetic speech or audio deepfakes are increasingly threatening to information veracity and\u2002public trust. Though deepfake detection has seen a lot of interest, the scarcity of open-source datasets for Bengali speech hampers progress\u2002in this field. To fill this gap\u2002we present the Bengali Real and Deepfake Audio Dataset, which is a curated repository of real and fictitious speech data in Bengali language that can facilitate deepfake detection research and speaker forensics. The dataset consists of\u20024000 authentic and 4000 deepfake speech clips from 10 subjects in the height standardized at a sampling rate of 24kHz. The deepfake samples were generated using FreeVC Voice Conversion model, with realistic acoustic properties. The goal\u2002of this dataset is to offer a much-needed resource for the research community, in order to engage and tackle deepfake audio detection system in a low-resource language such as Bengali."
DOI: 10.6084/m9.figshare.30654011
title: Prepared data for analysis

description: This is the data after classifying the groups and preparing it for analysis.in the metadata table (Groups): typ2 is time and type location
DOI: 10.6084/m9.figshare.30654011.v3
title: Prepared data for analysis

description: This is the data after classifying the groups and preparing it for analysis.in the metadata table (Groups): typ2 is time and type location
DOI: 10.6084/m9.figshare.30654011.v4
title: Prepared data for analysis

description: This is the data after classifying the groups and preparing it for analysis.in the metadata table (Groups): typ2 is time and type location
DOI: 10.15468/dl.cm4nn4
title: Occurrence Download

description: A dataset containing 20780 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Month is October",
 "StateProvince is New Brunswick",
 "Year 2023-2023"
 ]
}

 The dataset includes 20780 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046089-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cz4he6
title: Occurrence Download

description: A dataset containing 1169 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Cambodia, Lao People’s Democratic Republic, Viet Nam)",
 "TaxonKey is Piper"
 ]
}

 The dataset includes 1169 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046092-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n7gwd2
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-112.7688 29.54913, -112.6188 29.54913, -112.6188 29.69913, -112.7688 29.69913, -112.7688 29.54913))"
 ]
}

 The dataset includes 18 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046090-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/umnn34
title: French Frigate Shoals, Northwestern Hawaiian Islands

description: These shallow water surveys were conducted by the Northwest Hawaiian Islands Rapid Assessment and Monitoring Program (NOW-RAMP) and surveyed French Frigate Shoals (FFS) and a number of other Northwest Hawaiian Islands (NWHI). FFS marine surveys were conducted at 39 stations by three different Rapid Ecological Assessment teams from the R/V Townsend Cromwell (11-25 September 2000) and the R/V Rapture (23-27 September 2000). This is a collection of polychaete worms.
DOI: 10.15468/dl.fnaawa
title: Occurrence Download

description: A dataset containing 182 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-112.6188 29.54913, -112.4688 29.54913, -112.4688 29.69913, -112.6188 29.69913, -112.6188 29.54913))"
 ]
}

 The dataset includes 182 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046093-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9mqea3
title: Occurrence Download

description: A dataset containing 11627 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Month is November",
 "StateProvince is New Brunswick",
 "Year 2023-2023"
 ]
}

 The dataset includes 11627 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046094-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.emf2u3
title: Occurrence Download

description: A dataset containing 12312 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Theobroma cacao"
 ]
}

 The dataset includes 12312 records from 459 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046095-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s6knmk
title: Occurrence Download

description: A dataset containing 1270 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-112.4688 29.54913, -112.3188 29.54913, -112.3188 29.69913, -112.4688 29.69913, -112.4688 29.54913))"
 ]
}

 The dataset includes 1270 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046096-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15196256
title: Deep Tracks: Using CNNs and Procedurally Simulated Data for Automated Vertebrate Footprint Classification

description: Simulated dataset

We provide the simulated data (.png) used to train neural network classifiers, separated by their corresponding labels and group (train or validation). 

The dataset contains a total of  40,000 simulated footprints images, belonging to ten different vertebrate classes. The footprints belong to the following clades: Mammalia (coyotes, foxes, bears, otters, squirrels, raccoons, deer), avian Dinosauria (turkeys) and non-avian Dinosauria (theropods, sauropods).

The images were created by Deep Tracks (DOI: 10.5281/ZENODO.15092442). 

 

Code 

We provide the code used by the best model configuration obtained. The first is the Python code used to pre-train the Convolutional Neural Network (CNN) on the simulated dataset, the second is the Python code to finetune the previously trained model to real footprint photographs.

 

Trained model weights and information

We provide the trained models information, (e.g., model weights, opt, The trained models information for both real and simulated datasets are avaia

 

Files provided

Simulated_data.zip - contains the images of the simuated footprints(.png)

BestSimulatedModel.zip - contains the trained model information for the simulated data (.pth)

BestRealModel.zip - contains the trained model information for the footprint photographs (.pth)

model_train_pretrain_simulateddata_efficientnet_b0.py - contains the code to pre-tain the model (.py)

model_train_finetune_to_realdata_efficientnet_b0.py - contains the code to finetune the pre-trained model on a real-world dataset (.py)
DOI: 10.5281/zenodo.15196257
title: Deep Tracks: Using CNNs and Procedurally Simulated Data for Automated Vertebrate Footprint Classification

description: Simulated dataset

We provide the simulated data (.png) used to train neural network classifiers, separated by their corresponding labels and group (train or validation). 

The dataset contains a total of  40,000 simulated footprints images, belonging to ten different vertebrate classes. The footprints belong to the following clades: Mammalia (coyotes, foxes, bears, otters, squirrels, raccoons, deer), avian Dinosauria (turkeys) and non-avian Dinosauria (theropods, sauropods).

The images were created by Deep Tracks (DOI: 10.5281/ZENODO.15092442). 

 

Code 

We provide the code used by the best model configuration obtained. The first is the Python code used to pre-train the Convolutional Neural Network (CNN) on the simulated dataset, the second is the Python code to finetune the previously trained model to real footprint photographs.

 

Trained model weights and information

We provide the trained models information, (e.g., model weights, opt, The trained models information for both real and simulated datasets are avaia

 

Files provided

Simulated_data.zip - contains the images of the simuated footprints(.png)

BestSimulatedModel.zip - contains the trained model information for the simulated data (.pth)

BestRealModel.zip - contains the trained model information for the footprint photographs (.pth)

model_train_pretrain_simulateddata_efficientnet_b0.py - contains the code to pre-tain the model (.py)

model_train_finetune_to_realdata_efficientnet_b0.py - contains the code to finetune the pre-trained model on a real-world dataset (.py)
DOI: 10.15468/dl.j5sd29
title: Occurrence Download

description: A dataset containing 9177 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((7.30634 61.17896,-1.39426 61.11437,-5.00836 58.56007,0.88128 51.13665,2.75526 51.08062,9.58188 53.58806,8.68951 56.15439,10.16192 57.5928,11.67895 57.83114,10.74196 59.63695,7.30634 61.17896))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Squalus acanthias"
 ]
}

 The dataset includes 9177 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046097-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yafmgf
title: Occurrence Download

description: A dataset containing 5056 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-114.4188 29.69913, -114.2688 29.69913, -114.2688 29.84913, -114.4188 29.84913, -114.4188 29.69913))"
 ]
}

 The dataset includes 5056 records from 129 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046098-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25581/spruce.128/2574526
title: SPRUCE Redox-Active Subsurface Organic Matter, Marcell Experimental Forest, Minnesota, 2023

description: This dataset contains measurements that report on the effects of the SPRUCE experimental treatments on redox-active organic matter (RAOM) reduction (Valenzuela and Cervantes, 2021). Measurements occurred at the SPRUCE Experiment site in the Marcell Experimental Forest in northern Minnesota, USA. This work is also a follow-up to Rush et al. (2021a) which investigated effects of temperature on RAOM reduction after two years of experimental warming (Rush et al. 2021b). This follow-up dataset addresses two main questions; (i) How does warming and elevated carbon dioxide (CO2) directly affect in situ RAOM reduction, and subsequent methane (CH4) and CO2 production, across the peat depth profile? and (ii) How has long-term warming and elevated CO2 changed the total RAOM pool, and subsequent CH4 and CO2 production, across the peat depth profile? This dataset reports electron shuttling capacity (a proxy for RAOM reduction; Keller, and Takagi, 2013) and carbon dioxide (CO2) and methane (CH4) concentrations both in one-week in situ incubations (2023-05-31 to 2023-08-01) and 42-day laboratory incubations from peat collected in 2023 (2023-05-31 to 2023-06-26). Laboratory incubations also measured acetate concentrations. The 2023 laboratory incubations were also compared with laboratory incubations conducted on peat collected in 2016 (Rush et al. 2021b). This dataset contains three data files in comma-separate (.csv) format. Additional metadata are provided: three data dictionaries and a file-level metadata file in comma separate (.csv) format and a user guide in PDF (*.pdf) format.
DOI: 10.15468/dl.gshw9s
title: Occurrence Download

description: A dataset containing 14087 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Month is December",
 "StateProvince is New Brunswick",
 "Year 2023-2023"
 ]
}

 The dataset includes 14087 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046099-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tzfnpp
title: Occurrence Download

description: A dataset containing 594 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Cambodia, Lao People’s Democratic Republic, Viet Nam)",
 "DatasetKey is one of (Tropicos Specimens Non-MO, The vascular plants collection (P) at the Herbarium of the Muséum national d'Histoire Naturelle (MNHN - Paris), Royal Botanic Gardens, Kew - Herbarium Specimens, World Plant Specimen from the Herbaria in China, Harvard University Herbaria: All Records, Tropicos MO Specimen Data)",
 "TaxonKey is Piper"
 ]
}

 The dataset includes 594 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046101-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v52dcb
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-114.2688 29.69913, -114.1188 29.69913, -114.1188 29.84913, -114.2688 29.84913, -114.2688 29.69913))"
 ]
}

 The dataset includes 50 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046102-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.