cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14420756
title: Dataset of gait analysis data of hip osteoarthritis patients before and 6 month after arthroplasty and asymptomatic volunteers

description: This project aim to share movement C3D files of locomotion data recorded by a 3D motion analysis system. We used the Plugin Gait model in both unilateral end-stage Hip Osteoarthritis patients and control volunteers. Patients' data were gathered one month before surgery and 6 months after. This dataset could lead to increase the sample size of similar datasets, analyse the effect of Hip Osteoarthritis on human gait, or conduce unusual analysis of gait thanks to the full body markerset used.<br>A complete description of the volunteers can be found on figshare ID(13655975) at https://doi.org/10.6084/m9.figshare.13655975.v9Complete dataset of C3D files for OsteoArthritis Patients can be found on figshare ID(14420645) at https://doi.org/10.6084/m9.figshare.14420645.v2Complete dataset of C3D files or healthy volunteers can be found on figshare ID(14420756) at https://doi.org/10.6084/m9.figshare.14420756.v2 <br>Arff files could also be downloaded on figshare (https://doi.org/10.6084/m9.figshare.15022827.v1 and https://doi.org/10.6084/m9.figshare.13656233.v4) with label details here (https://doi.org/10.6084/m9.figshare.13656047.v3)
DOI: 10.6084/m9.figshare.15022827
title: Dataset from gait analysis data of hip osteoarthritis patients before and 6 month after arthroplasty and asymptomatic volunteers

description: Dataset of ARFF (Weka) Files from gait analysis data of hip osteoarthritis patients before and 6 month after arthroplasty and asymptomatic volunteers<br>A complete description of the volunteers can be found on figshare ID(13655975) at https://doi.org/10.6084/m9.figshare.13655975.v9Complete dataset of C3D files for OsteoArthritis Patients can be found on figshare ID(14420645) at https://doi.org/10.6084/m9.figshare.14420645.v2Complete dataset of C3D files or healthy volunteers can be found on figshare ID(14420756) at https://doi.org/10.6084/m9.figshare.14420756.v2 <br>Arff files could also be downloaded on figshare (https://doi.org/10.6084/m9.figshare.15022827.v1 and https://doi.org/10.6084/m9.figshare.13656233.v4) with label details here (https://doi.org/10.6084/m9.figshare.13656047.v3)
DOI: 10.6084/m9.figshare.19760233
title: A database of anti-coronavirus peptides

description: These data were manually collected from PubMed, Uniprot, and published peer-reviewed articles. These datasets were used in the article "A database of anti-coronavirus peptides". PMID are added to all entries in database and this dataset to connect to the referenced data source.
DOI: 10.6084/m9.figshare.20226060
title: Supplementary Material for: Safety and efficacy of blinatumomab in Japanese adult and pediatric patients with relapsed/refractory B-cell precursor acute lymphoblastic leukemia: final results from an expansion cohort

description: Background The safety and efficacy of blinatumomab, a CD19/CD3 BiTE® (bispecific T-cell engager) molecule, was evaluated in an expansion cohort of the phase 1b/2 study (NCT02412306) in Japanese adult (n=14) and pediatric (n=17) patients with relapsed/refractory Philadelphia-negative B-cell precursor (BCP) acute lymphoblastic leukemia (ALL). Methods Globally recommended blinatumomab doses were administered to adult (9–28 μg/day) and pediatric (5–15 μg/m2/day) patients. Primary endpoint was the incidence of treatment-emergent adverse events (TEAEs) and treatment-related AEs. Results All adult and pediatric patients experienced ≥1 TEAE. Grade ≥3 TEAEs were observed in 11 (79%) adult and 15 (88%) pediatric patients. Blinatumomab was discontinued in one (6%) pediatric patient due to treatment-related grade 4 cytokine release syndrome. Fatal AEs such as disease progression and multiple organ dysfunction syndrome, which were not treatment-related, were reported in two (12%) pediatric patients. Eleven (79%) adults achieved complete remission (CR)/CR with partial hematological recovery (CRh) within the first two blinatumomab cycles. Nine of 10 adult patients with CR/CRh and evaluable minimal residual disease (MRD) achieved MRD response. CR/CRh was achieved by five (29%) pediatric patients, of which two had MRD response. Conclusion In conclusion, blinatumomab was safe and efficacious in Japanese patients with relapsed/refractory BCP ALL.
DOI: 10.15482/usda.adc/1520060
title: Data from: Responses to environmental variability by herbivorous insects and their natural enemies within a bioenergy crop, Miscanthus x giganteus
DOI: 10.3886/e123401v5
title: Institutional Origins of COVID-19 Public Health Protective Policy Response (PPI)

description: The PPI measures public health government responses to COVID-19 at all levels of government throughout the world. The PPI measure considers the extent of COVID-19 policy responses in the following categories: state of emergencies, border closures, school closures, social gathering, and social distancing limitations, home-bound policies, medical isolation policies, closure/restriction of businesses and services, and the mandates to wear face masks. The coding for public health policies is based on government websites and reputable news sources reporting adoption of these policies.<br><br>Total, National, and Subnational Indices are calculated based on the standing public health policies adopted at various levels of government for each unit (state, province, etc.) for each day, by adding together the highest values across levels of government in each category on that day and normalizing to range between 0 and 1.<br><br>National and subnational PPIs were constructed with the values in each category from just national- or just subnational-level policies. The current version of the data set contains public health protective policies on the national and sub-national levels, while we plan to expand to the municipal level in the future. The unit of analysis is unit-day.<br><br>Regular updates of this dataset are posted in the dedicated GitHub repository (https://github.com/COVID-policy-response-lab/PPI-data). <br><br>An ArcGIS dashboard with the project data can be found here: https://elcamaleon.binghamton.edu/portal/apps/opsdashboard/index.html#/cc61a3652eb74b8ea8864928e8026...<br><br><br><br>
description: Public Health Policies/Non-Medical Interventions in Response to COVID-19.
DOI: 10.5281/zenodo.4072462
title: Summer Lake Pliocene Tephra Dataset

description: This dataset describes a fault-uplifted sequence of 11 tephra layers preserved in ~3 Ma, fossiliferous lacustrine sediments and 3 tephra in adjacent late Pleistocene lacustrine sediments and Holocene dune sand at Summer Lake, Oregon, USA. It includes tephra and host sediment stratigraphy, sample information, tephra layer thicknesses, tephra grain size data, volcanic glass geochemistry, SEM imagery, method information, and suggested tephra correlations. Most of this information is contained in a series of spreadsheets that follow tephra community recommended best practices. The listed files below follow the naming convention and format of Abbott et al. (2020) version 2.0, and they serve as worked examples of that format. See DOI: 10.5281/zenodo.3866266 for more information. Summer Lake Collection3b.xlsx (location information, sample information, stratigraphy) Summer Lake Sample_Processing2.xlsx (sample preparation) Summer Lake Physical_analysis2.xlsx (maximum grain size data, pumice class density) Summer Lake Physical_Microanalysis3.xlsx (polarizing microscope images, SEM-EDS images, sample mount images) Summer Lake Geochemical_Analysis 3.xlsx (EPMA method details) Glass geochemistry by EPMA may be found in the following file: Summer Lake Glass DATA.xlsx SEM and other images may be found in the following file: Summer Lake EPMA Images.zip Additional geological field data and field photographs may be found in the StraboSpot repository.
DOI: 10.5281/zenodo.5893641
title: ResOpsUS

description: Reservoir operations dataset that contains daily time series data of storage, inflow, outflow, elevation and evaporation for all the large dams in the Contiguous United States
DOI: 10.5281/zenodo.6323074
title: Glacier thickness maps for Ecuador and Colombia

description: Upload associated with Scientific Data submission: Glacier thickness and ice volume of the inner tropical Andes. The dataset includes: -Ice velocity maps for all 11 glacier regions (5 in Ecuador and 6 in Colombia) -Ice thickness maps for all 11 glacier regions generated using the 6 different thickness calculation methods -Multi-model ensemble mean glacier thickness maps for all 11 glacier regions -Basin-divided ice volumes for each glacier region, with a 1 km, 5 km, and 20 km buffer -Results of a full parameter sensitivity test for the thickness calculation All data are saved in 32-bit floating-point geotiff format. The data are freely available under the Creative Commons Attribution Licence, CC BY 4.0. The feature-tracking code used to derive ice velocities, GIV, is available on github and Zenodo (https://doi.org/10.5281/zenodo.4904544). All other code, including Google Earth Engine download scripts and the ice-thickness inversion code is available on zenodo (https://doi.org/10.5281/zenodo.6323069).
DOI: 10.5281/zenodo.6370073
title: United States Environmentally-Extended Input-Output (USEEIO) Modeling Framework

description: This is a snapshot of the USEEIO modeling framework repository that is compilation of a README, versioning scheme, and a python script supplemented with a to convert a USEEIO model generated from useeior in the API format into openLCA schema JSON-LD files. This is not source code for generating the USEEIO v2.0 model.
DOI: 10.5281/zenodo.6468938
title: AnimalTraits

description: AnimalTraits: a curated animal trait database for body mass, metabolic rate and brain size. This repository contains the animal traits database in CSV format (observations.csv) and Excel format (observations.xlsx), column documentation in CSV format (column-documentation.csv) and a Zip file containing raw data, scripts to compile the database and source for the website (https://animaltraits.org/).
DOI: 10.5281/zenodo.6584284
title: Quality-controlled geomagnetic hourly mean values datasets of Sheshan observatory from 1933 to 2019

description: The Sheshan geomagnetic observatory (IAGA code SSH) is one of the earliest geomagnetic observatories in China and one of the geomagnetic observatories with the longest history in the world. The datasets include the absolute hourly mean values files of declination components D, horizontal components H and vertical components Z at SSH for 1933-2019, and the metadata files about the datasets. The datasets can be applied to the study of geomagnetic daily variation, construction of geomagnetic field model and secular variation of geomagnetic field.
DOI: 10.5281/zenodo.7005471
title: Quality-controlled geomagnetic hourly mean values datasets of Sheshan observatory from 1933 to 2019

description: The Sheshan geomagnetic observatory (IAGA code SSH) is one of the earliest geomagnetic observatories in China and one of the geomagnetic observatories with the longest history in the world. The datasets include the absolute hourly mean values files of declination components D, horizontal components H and vertical components Z at SSH for 1933-2019, and the metadata files about the datasets. The datasets can be applied to the study of geomagnetic daily variation, construction of geomagnetic field model and secular variation of geomagnetic field.
DOI: 10.6084/m9.figshare.13656233
title: Dataset of gait analysis data of hip osteoarthritis patients before and 6 month after arthroplasty and asymptomatic volunteers

description: This project aim to share weka files of locomotion data recorded by a 3D motion analysis system. We used the Plugin Gait model in both unilateral end-stage Hip Osteoarthritis patients and control volunteers. Patients' data were gathered one month before surgery and 6 months after. This dataset could lead to increase the sample size of similar datasets, analyse the effect of Hip Osteoarthritis on human gait, or conduce unusual analysis of gait thanks to the full body markerset used.<br>A complete description of the volunteers can be found on figshare ID(13655975) at https://doi.org/10.6084/m9.figshare.13655975.v9Complete dataset of C3D files for OsteoArthritis Patients can be found on figshare ID(14420645) at https://doi.org/10.6084/m9.figshare.14420645.v2Complete dataset of C3D files or healthy volunteers can be found on figshare ID(14420756) at https://doi.org/10.6084/m9.figshare.14420756.v2 <br>Arff files could also be downloaded on figshare (https://doi.org/10.6084/m9.figshare.15022827.v1 and https://doi.org/10.6084/m9.figshare.13656233.v4) with label details here (https://doi.org/10.6084/m9.figshare.13656047.v3)<br>
DOI: 10.6084/m9.figshare.14079863
title: Auto-generated Database of Semiconductor Band Gaps Using ChemDataExtractor

description: A Materials Database of Semiconductor Band Gap Experimental Values Auto-generated Using ChemDataExtractor
DOI: 10.6084/m9.figshare.14420645
title: Dataset of gait analysis data of hip osteoarthritis patients before and 6 month after arthroplasty and asymptomatic volunteers

description: This project aim to share movement C3D files of locomotion data recorded by a 3D motion analysis system. We used the Plugin Gait model in both unilateral end-stage Hip Osteoarthritis patients and control volunteers. Patients' data were gathered one month before surgery and 6 months after. This dataset could lead to increase the sample size of similar datasets, analyse the effect of Hip Osteoarthritis on human gait, or conduce unusual analysis of gait thanks to the full body markerset used.<br>A complete description of the volunteers can be found on figshare ID(13655975) at https://doi.org/10.6084/m9.figshare.13655975.v9Complete dataset of C3D files for OsteoArthritis Patients can be found on figshare ID(14420645) at https://doi.org/10.6084/m9.figshare.14420645.v2Complete dataset of C3D files or healthy volunteers can be found on figshare ID(14420756) at https://doi.org/10.6084/m9.figshare.14420756.v2 <br>Arff files could also be downloaded on figshare (https://doi.org/10.6084/m9.figshare.15022827.v1 and https://doi.org/10.6084/m9.figshare.13656233.v4) with label details here (https://doi.org/10.6084/m9.figshare.13656047.v3)<br>
DOI: 10.6084/m9.figshare.17702072
title: An improved high quality genome assembly of turbot (Scophthalmus maximus)

description: Turbot (<i>Scophthalmus maximus</i>), commercially important flatfish species, is widely cultivated in Europe and China. Here, we present an improved high-quality chromosome-scale genome assembly of turbot using a combination of PacBio long-read and Illumina short-read sequencing technologies. turbot_WW.gff is the annotation file of the turbot genome assembly. functional annotation of protein-coding genes.xls is the result of functional annotation of protein-coding genes using various databases. turbot_gene.TPM is the gene expression matrix used for gene co-expression network inference. genes per module.xlsx is gene IDs in every co-expression module. hub genes set.xlsx is the list of hub genes for every co-expression module. DEGs set.xlsx is the list of differential expression genes for each stress. GO enrichment.xlsx and KEGG enrichment.xlsx are the results of function enrichment for genes in co-expression modules that extremely significant correlated with each stress. key hub genes.xlsx is the list of candidate stress-related key hub genes generated by taking the intersection of hub gene set and DEGs set.
DOI: 10.6084/m9.figshare.21119641
title: Supplementary Material for: Long-term trends in obesity prevalence by socio-economic group in five European countries and the USA: The relevance of the diffusion of innovations theory

description: Abstract Introduction: Cross-national comparison suggests that the timing of the obesity epidemic differs across socio-economic groups (SEGs). Similar to the smoking epidemic, these differences might be described by the diffusion of innovations theory, which states that health behaviours diffuse from higher to lower SEGs. However, the applicability of the diffusion of innovations theory to long-term time trends in obesity by SEG is unknown. We studied long-term trends in the obesity prevalence by socio-economic group in England, France, Finland, Italy, Norway, and the USA and examined whether trends are described by the diffusion of innovations theory. Methods: Obesity prevalence from 1978 to 2019 by educational level, sex, and age group (25+) from health surveys were harmonised, age-standardised, Loess-smoothed, and visualised. Prevalence rate differences were calculated and segmented regression was performed to obtain annual percentage changes, which were compared over time and across SEGs. Results: Obesity prevalence among lower educated has exceeded that of higher educated groups, except among USA men, in all countries throughout the study period. A comparable increase across educational levels was observed until approximately 2000. Recently, obesity prevalence stagnated among higher educated groups in Finland, France, Italy, and Norway, and lower educated groups in England and the USA. Discussion: Recent trends in obesity prevalence by SEG are mostly in line with the diffusion of innovations theory, however, no diffusion from higher to lower SEGs at the start of the epidemic was found. The stagnation among higher SEGs but not lower SEGs suggests that the latter will likely experience the greatest future burden.
DOI: 10.6084/m9.figshare.21324354
title: Supplementary Material for: Gestational Age-Adjusted Reference Ranges for Fetal Left Ventricle Longitudinal Strain by Automated Cardiac Motion Quantification between 24 and 37 Weeks’ Gestation

description: <b><i>Introduction:</i></b> The objective of this study was to construct gestational age (GA) based reference values for left ventricle (LV) longitudinal strain in normal fetuses, between 24 and 37 weeks’ gestation, assessing its feasibility and reproducibility with automated cardiac motion quantification software (aCMQ-QLab), which is widely used in postnatal echocardiography. <b><i>Methods:</i></b> This prospective study included healthy gravid women with singleton pregnancies and no evidence of fetal structural cardiovascular disease. Fetal echocardiographies were performed between 24 and 37 GA. 2D four-chamber view clips were recorded and LV longitudinal strain was analyzed offline. Intra- and interobserver reproducibility between 2 independent observers was evaluated by intraclass correlation coefficients (ICC) and Bland-Altman scatterplots. Regression analysis was used to determine GA adjusted reference ranges and construct nomograms. <b><i>Results:</i></b> LV longitudinal strain measurements were feasible in 95.4% of acquisitions. 435 clips were obtained. Intra- and interobserver ICC were 0.998 (95% CI 0.997–0.999) and 0.991 (95% CI 0.984–0.995), respectively. The global longitudinal strain and the middle and apical LV segments showed progressive decline as GA advanced, whereas the basal segments remained stable. <b><i>Conclusions:</i></b> Assessment of LV longitudinal strain by aCMQ-QLab is feasible, reproducible, and within normal ranges. Our results offer more information regarding fetal cardiac function assessment with 2D speckle tracking techniques, aiding in the introduction of this software into research practice, encouraging the realization of more studies, and probably helping in its future use in clinical practice, allowing longitudinal surveillance of strain without intervendor variability and aiding in follow-up of fetal cardiac conditions before and after birth, as it is the most commonly used software postnatally.
DOI: 10.6084/m9.figshare.21406746
title: Supplementary Material for: Crossover Patient Outcomes for Targeted Lung Denervation in Moderate to Severe Chronic Obstructive Pulmonary Disease: AIRFLOW-2

description: <b><i>Background:</i></b> Targeted Lung Denervation (TLD) is a potential new therapy for COPD. Radiofrequency energy is bronchoscopically delivered to the airways to disrupt pulmonary parasympathetic nerves, to reduce bronchoconstriction, mucus hypersecretion, and bronchial hyperreactivity. <b><i>Objectives:</i></b> This work assesses the effect of TLD on COPD exacerbations (AECOPD) in crossover subjects in the AIRFLOW-2 trial. <b><i>Method:</i></b> The AIRFLOW-2 trial is a multicentre, randomized, double-blind, sham-controlled crossover trial of TLD in COPD. Patients with symptomatic COPD on optimal medical therapy with an FEV1 of 30–60% predicted received either TLD or sham bronchoscopy in a 1:1 randomization. Those in the sham arm had the opportunity to cross into the treatment arm after 12 months. The primary end point was rate of respiratory adverse events. Secondary end points included adverse events, changes in lung function and health-related quality of life and symptom scores. <b><i>Results:</i></b> Twenty patients were treated with TLD in the crossover phase and were subsequently followed up for 12 months (50% female, mean age 64.1 ± 6.9 years). After TLD, there was a trend towards a reduction in time to first AECOPD (hazard ratio 0.65, <i>p</i> = 0.28, not statistically significant) in comparison to sham follow-up period. There was also a reduction in time to first severe AECOPD in the crossover period (hazard ratio 0.38, <i>p</i> = 0.227, not statistically significant). Symptom scores and lung function showed stability. <b><i>Conclusions:</i></b> AIRFLOW-2 crossover data support that of the randomization phase, showing trends towards reduction in COPD exacerbations with TLD.
DOI: 10.13026/p2rp-sg37
title: NCH Sleep DataBank: A Large Collection of Real-world Pediatric Sleep Studies with Longitudinal Clinical Data

description: In order to accelerate research on pediatric sleep and its connection to
health, Nationwide Children's Hospital (NCH) and Carnegie Mellon University
(CMU) introduce the NCH Sleep DataBank. This dataset has 3,984 pediatric sleep
studies on 3,673 unique patients conducted at NCH in Columbus, Ohio, USA
between 2017 and 2019, along with the patient's longitudinal clinical data.
The published Polysomnography (PSG) contains the patient's physiological
signals as well as the technician's assessment of the sleep stages and
descriptions of additional irregularities.

The novelties of this dataset include: (1) Size **:** Its large size is
suitable for discovering new scientific insights via data mining,  (2) ****
Patient population **:** It explicitly focuses on pediatric patients, (3)
Clinical setting **:** The sleep studies were gathered in the real-world
clinical setting at NCH as opposed to, for example, in a controlled clinical
trial, and (4) Rich set of clinical data **:** The accompanying 5.6 million
records of clinical data are extracted from the Electronic Health Record
(EHR), and are separated into encounters, medications, measurements (e.g. body
mass index), diagnoses, and procedures.

The NCH Sleep DataBank is a valuable resource for advancing automatic sleep
scoring and real-time sleep disorder prediction, among many other potential
scientific discoveries. Accompanying code in Python to assist users in
interacting with the dataset is published on GitHub.
DOI: 10.15454/e2vtrb/a1tugt
title: eukaryotic_proteins_taxonomy.txt

description: Diamond LCA output and complete lineage for the 8M of eukaryotic proteins
DOI: 10.15454/e2vtrb/tfjjkx
title: eukaryotic_proteins_clustered.tsv

description: Composition of eukaryotic protein clusters
DOI: 10.15454/e2vtrb/y6l2oh
title: Supplementary_data_tables.pdf

description: Table 1 Kraken2 lineage distribution in main eukaryotic Clade Table 2 Number of proteins predicted with Augustus Table 3 Information on gene prediction outputs Table 4 Statistics of BUSCO scores