cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3509066.v2
title: DNA sequence of the gp63 fragment encoding the functional domain of leishmanolysin in natural isolates of Leishmania braziliensis from Corte de Pedra, Northeast Brazil: allele 2.

description: DNA sequence of the gp63 fragment encoding the functional domain of leishmanolysin in natural isolates of Leishmania braziliensis from Corte de Pedra, Northeast Brazil: allele 2. The stretch of gp 63 previously described as encoding the functional domain of the molecule was amplified by PCR, cloned into pcr 2.1 vector and bidirectionally sequenced. Sequences from a panel of 41 parasite isolates were aligned and 45 alleles of the fragment could be identified based on indel and SNPs presented among cloned domains. Haplotypes of polymorphisms (indel and SNPs) that could be detected in at least two clones of the gp63 domain in a single isolate, and in at least two parasite isolates in the collection were considered alleles. Corte de Pedra is a region highly endemic for American tegumentary leishmaniasis (ATL) due to L. braziliensis. Several forms of ATL occur and close to 1,500 new cases are diagnosed in the region each year.
DOI: 10.6084/m9.figshare.3509066.v1
title: Leishmania_braziliensis_gp63_functional_domain_sequence 2.fas

description: DNA sequence of the gp63 fragment encoding the functional domain of leishmanolysin in natural isolates of Leishmania braziliensis from Corte de Pedra, Northeast Brazil: allele 2. The stretch of gp 63 previously described as encoding the functional domain of the molecule was amplified by PCR, cloned into pcr 2.1 vector and bidirectionally sequenced. Sequences from a panel of 41 parasite isolates were aligned and 45 alleles of the fragment could be identified based on indel and SNPs presented among cloned domains. Haplotypes of polymorphisms (indel and SNPs) that could be detected in at least two clones of the gp63 domain in a single isolate, and in at least two parasite isolates in the collection were considered alleles. Corte de Pedra is a region highly endemic for American tegumentary leishmaniasis (ATL) due to L. braziliensis. Several forms of ATL occur and close to 1,500 new cases are diagnosed in the region each year.
DOI: 10.6084/m9.figshare.3507908
title: DNA sequence of the gp63 fragment encoding the functional domain of leishmanolysin in natural isolates of Leishmania braziliensis from Corte de Pedra, Northeast Brazil: allele 1.

description: DNA sequence of the gp63 fragment encoding the functional domain of leishmanolysin in natural isolates of Leishmania braziliensis from Corte de Pedra, Northeast Brazil: allele 1. The stretch of gp 63 previously described as encoding the functional domain of the molecule was amplified by PCR, cloned into pcr 2.1 vector and bidirectionally sequenced. Sequences from a panel of 41 parasite isolates were aligned and 45 alleles of the fragment could be identified based on indel and SNPs presented among cloned domains. Haplotypes of polymorphisms (indel and SNPs) that could be detected in at least two clones of the gp63 domain in a single isolate, and in at least two parasite isolates in the collection were considered alleles. Corte de Pedra is a region highly endemic for American tegumentary leishmaniasis (ATL) due to L. braziliensis. Several forms of ATL occur and close to 1,500 new cases are diagnosed in the region each year.
DOI: 10.6084/m9.figshare.3507908.v1
title: Leishmania_braziliensis_gp63_functional_domain_sequence 1.fas

description: DNA sequence of the gp63 fragment encoding the functional domain of leishmanolysin in natural isolates of Leishmania braziliensis from Corte de Pedra, Northeast Brazil: allele 1. The stretch of gp 63 previously described as encoding the functional domain of the molecule was amplified by PCR, cloned into pcr 2.1 vector and bidirectionally sequenced. Sequences from a panel of 41 parasite isolates were aligned and 45 alleles of the fragment could be identified based on indel and SNPs presented among cloned domains. Haplotypes of polymorphisms (indel and SNPs) that could be detected in at least two clones of the gp63 domain in a single isolate, and in at least two parasite isolates in the collection were considered alleles. Corte de Pedra is a region highly endemic for American tegumentary leishmaniasis (ATL) due to L. braziliensis. Several forms of ATL occur and close to 1,500 new cases are diagnosed in the region each year.
DOI: 10.6084/m9.figshare.3507758
title: Ocean Mesoscale Eddy Diffusivity (Abernathey and Marshall, 2013)

description: Surface mesoscale diffusivities as defined in the paper:<br>Abernathey, R. P., and J. Marshall (2013), Global surface eddy diffusivities derived from satellite altimetry, J. Geophys. Res. Oceans, 118, 901–916, doi:10.1002/jgrc.20066.
DOI: 10.6084/m9.figshare.3507758.v1
title: Ocean Mesoscale Eddy Diffusivity (Abernathey and Marshall, 2013)

description: Surface mesoscale diffusivities as defined in the paper:<br>Abernathey, R. P., and J. Marshall (2013), Global surface eddy diffusivities derived from satellite altimetry, J. Geophys. Res. Oceans, 118, 901–916, doi:10.1002/jgrc.20066.
DOI: 10.6084/m9.figshare.3507749
title: Quasi-static cyclic tests of two U-shaped RC walls under diagonal loading

description: Reinforced concrete core walls are often used to provide horizontal stiffness and strength to mid- or high-rise buildings. The design practice is, however, largely based on findings from tests and analysis of rectangular walls subjected to uni-directional loading. Two quasi-static cyclic tests on U-shaped walls were conducted in which the walls were loaded in the diagonal direction. These tests highlight that the diagonal loading direction is critical for the following reasons: (1) The strain gradient across the wall width promotes out-of-plane buckling of the boundary elements in the flange ends; (2) Plane section analysis does not yield reliable moment capacity estimates for the diagonal loading direction and (3) Under diagonal loading the compression depth in the flange end boundary elements is larger than for the other loading directions, exposing unconfined concrete to large compressive strains. The test data comprises conventional and optical measurements as well as results of material tests and photos documenting the damage of the test specimens.<br><br><i>Note: If you use the any of the data or the photos please reference the following article: Constantin R, Beyer K (2016) Behaviour of U-shaped RC walls under quasi-static cyclic diagonal loading. Engineering Structures, 106(1):36-52.</i><br><br>
DOI: 10.6084/m9.figshare.3507734
title: Fluidity .flml set-up files for submarine slide tsunami

description: Set-up .flml files for using Fluidity to model tsunami generated by submarine slides<br>
DOI: 10.6084/m9.figshare.3507584
title: Unequal distribution of adolescent overweight in immigration regions

description: The paper aims to reveal the distribution of adolescent overweight in different types of schools in immigrant cities in China.
DOI: 10.6084/m9.figshare.3507584.v1
title: Unequal distribution of adolescent overweight in immigration regions

description: The paper aims to reveal the distribution of adolescent overweight in different types of schools in immigrant cities in China.
DOI: 10.6084/m9.figshare.3507581
title: Sets of genes with brain function: testing for enrichment in neuropsychiatric diseases

description: In this table, we list the genes used for pathway analyses in this manuscript. We also indicate the chromosome that the gene is located on, the length of the genes, and whether or not the gene is annotated as part of four different gene sets.
DOI: 10.6084/m9.figshare.3507581.v2
title: Sets of genes with brain function: testing for enrichment in neuropsychiatric diseases

description: In this table, we list the genes used for pathway analyses in this manuscript. We also indicate the chromosome that the gene is located on, the length of the genes, and whether or not the gene is annotated as part of four different gene sets.
DOI: 10.6084/m9.figshare.3507581.v1
title: BrainGeneSets.txt

description: In this table, we list the genes used for pathway analyses in this manuscript. We also indicate the chromosome that the gene is located on, the length of the genes, and whether or not the gene is annotated as part of four different gene sets.
DOI: 10.6084/m9.figshare.3507536
title: An approximate maximum likelihood phylogenetic tree of sequenced streptomycetes (Nerwick format)

description: This is the phylogenetic tree (in Nerwick format) described in the following manuscript submitted to Chemical Science:<br>Formicamycins, antibacterial polyketides produced by <i>Streptomyces formicae </i>isolated from African <i>Tetraponera</i> plant-ants<br>Zhiwei Qin<sup>1</sup>, John T Munnoch<sup>2</sup>, Rebecca Devine<sup>2</sup>, Neil A Holmes<sup>2</sup>, Ryan F Seipke<sup>3</sup>, Barrie Wilkinson<sup>1</sup>* and Matthew I Hutchings<sup>2</sup>*<br><sup>1</sup>Department of Molecular Microbiology, John Innes Centre, Norwich Research Park, Norwich, NR4 7TJ, United Kingdom.<br><sup>2</sup>School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ, United Kingdom. <br><sup>3</sup>School of Molecular and Cellular Biology, Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, United Kingdom.<br>*Contact: m.hutchings@uea.ac.uk or @matthutchings10 and barrie.wilkinson@jic.ac.uk <br><b>ESI Figure 4.</b> An approximate maximum likelihood phylogenetic tree of sequenced streptomycetes. A phylogeny was inferred for <i>Mycobacterium tuberculosis</i> and 573 sequenced streptomycetes based on concatenated partial sequences for <i>atpD-rpoB</i>. FastTree local support values are indicated at each node.
DOI: 10.6084/m9.figshare.3507536.v2
title: An approximate maximum likelihood phylogenetic tree of sequenced streptomycetes (Nerwick format)

description: This is the phylogenetic tree (in Nerwick format) described in the following manuscript submitted to Chemical Science:<br>Formicamycins, antibacterial polyketides produced by <i>Streptomyces formicae </i>isolated from African <i>Tetraponera</i> plant-ants<br>Zhiwei Qin<sup>1</sup>, John T Munnoch<sup>2</sup>, Rebecca Devine<sup>2</sup>, Neil A Holmes<sup>2</sup>, Ryan F Seipke<sup>3</sup>, Barrie Wilkinson<sup>1</sup>* and Matthew I Hutchings<sup>2</sup>*<br><sup>1</sup>Department of Molecular Microbiology, John Innes Centre, Norwich Research Park, Norwich, NR4 7TJ, United Kingdom.<br><sup>2</sup>School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ, United Kingdom. <br><sup>3</sup>School of Molecular and Cellular Biology, Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, United Kingdom.<br>*Contact: m.hutchings@uea.ac.uk or @matthutchings10 and barrie.wilkinson@jic.ac.uk <br><b>ESI Figure 4.</b> An approximate maximum likelihood phylogenetic tree of sequenced streptomycetes. A phylogeny was inferred for <i>Mycobacterium tuberculosis</i> and 573 sequenced streptomycetes based on concatenated partial sequences for <i>atpD-rpoB</i>. FastTree local support values are indicated at each node.
DOI: 10.6084/m9.figshare.3507503
title: Supplementary Material for: A Rare Variant in CACNA1D Segregates with 7 Bipolar I Disorder Cases in a Large Pedigree

description: Whole-genome sequencing was performed on 3 bipolar I disorder (BPI) cases from a multiplex pedigree of European ancestry with 7 BPI cases. Within <i>CACNA1D</i>, a gene implicated by genome-wide association studies, a G to C nucleotide transversion at 53,835,340 base pairs (bps) was found predicting the substitution of proline for alanine at amino acid position 1751 (A1751P). Using Sanger sequencing, the DNA variant was shown to co-segregate with the remaining 4 BPI cases within the pedigree. A high-resolution DNA denaturing curve method was then used to screen for the presence of the A1751P change in 4,150 BPI cases from the NIMH Genetics Initiative. The A1751P variant was found in 4 BPI cases. A second variant within exon 43, a C to T nucleotide transition, was found in 1 case at 53,835,355 bps, predicting the substitution of tryptophan for arginine at amino acid position 1771 (R1771W). In the NHLBI Exome Sequencing Project database, the heterozygous A1751P variant was present in 3 of 4,300 subjects of European ancestry, and the R1771W change was not present in any subject. Given the rarity of these variants, large-scale case/control rare variant sequencing studies will be required for definitive conclusions.
DOI: 10.6084/m9.figshare.3507410
title: Dietary modulation of cortical excitation and inhibition (data)

description: Spreadsheets of steady-state EEG amplitudes at different frequencies, across all conditions of the experiment. <br>Coding variables are:<br><br>Group (0=control, 1=active)<br>Time (0=pre-treatment, 1=post-treatment, 2=post-washout)<br>Target contrast (columns) <br>Mask contrast (either 0 or 30dB)<br><br>These data permit all statistics reported in the manuscript to be repeated.<br>
DOI: 10.6084/m9.figshare.3507314
title: Big Data: Road Ahead for India

description: Advancements in computing technologies make new<br>platforms and large volumes of data available to<br>businesses and governments to discover hidden<br>underlying patterns in the data and creating new<br>knowledge. While businesses need to embrace these<br>technologies in order to stay ahead of competition,<br>governments can reap great benefits in cost effectively<br>delivering social services and bring about improvement in social development indices. However, before any new technology can become a powerful resource (for business or for government), there exists a fundamental need for extensive planning, such that one can chalk out a future trajectory, prepare for the changes to come, and invest prudently. Exploitation of Big Data platforms and technologies requires both corporate strategies and government policies to be in place much before the results would start pouring in. In this paper, we investigate the potential of available Big Data platforms and technologies, their current use by various governments, and their potential for use by the central and state Governments in India.
DOI: 10.6084/m9.figshare.3507314.v2
title: Big Data: Road Ahead for India

description: Advancements in computing technologies make new<br>platforms and large volumes of data available to<br>businesses and governments to discover hidden<br>underlying patterns in the data and creating new<br>knowledge. While businesses need to embrace these<br>technologies in order to stay ahead of competition,<br>governments can reap great benefits in cost effectively<br>delivering social services and bring about improvement in social development indices. However, before any new technology can become a powerful resource (for business or for government), there exists a fundamental need for extensive planning, such that one can chalk out a future trajectory, prepare for the changes to come, and invest prudently. Exploitation of Big Data platforms and technologies requires both corporate strategies and government policies to be in place much before the results would start pouring in. In this paper, we investigate the potential of available Big Data platforms and technologies, their current use by various governments, and their potential for use by the central and state Governments in India.
DOI: 10.6084/m9.figshare.3507272
title: University of Mississippi Field Station map GIS data

description: A map of the University of Mississippi Field Station and accompanying GIS data
DOI: 10.6084/m9.figshare.3507266
title: Plantas para la Esperanza

description: This text is not a scientific study or a scientific report of any kind, nor is a trial, and is not a scientific text in any way, is just a simple collection of information that can be useful for adjunctive treatment to traditional medicine, any other use of the information available here, is at the discretion of who uses it.On the other hand, we are not denying the potential power "per se" of medicinal plants to treat diseases only with this type of treatment.<br>Este texto no se trata de un estudio, ni de un informe científico de ninguna clase, tampoco se trata de un ensayo clínico, ni de un texto científico en alguna forma, simplemente es una recopilación de información que puede ser útil para el tratamiento complementario de la medicina tradicional, cualquier otro uso de la información aquí disponible queda a criterio de quién la use.Por otro lado, tampoco con lo anterior se niega el potencial "per se" de las plantas medicinales para tratar enfermedades solo con este tipo de tratamientos.
DOI: 10.6084/m9.figshare.3507263
title: Майерсон, С. Неотложные состояния в кардиологии.Пер. с англ. под ред. проф.Г. Е. Гендлина - 3-е изд. (эл.).2015.pdf

description: Майерсон, С. Неотложные состояния в кардиологии.Пер. с англ. под ред. проф.Г. Е. Гендлина - 3-е изд. (эл.).2015.pdf
DOI: 10.6084/m9.figshare.3507167
title: Quality control figures for ATAC-seq on a mesoderm differentiation dataset

description: Quality control figures for the ATAC-seq data described in Loh and Chen et al., Cell (http://www.cell.com/cell/abstract/S0092-8674(16)30740-1).
DOI: 10.6084/m9.figshare.3507167.v2
title: Quality control figures for ATAC-seq on a mesoderm differentiation dataset

description: Quality control figures for the ATAC-seq data described in Loh and Chen et al., Cell (http://www.cell.com/cell/abstract/S0092-8674(16)30740-1).
DOI: 10.6084/m9.figshare.3507167.v1
title: Mesoderm ATAC-seq QC figures

description: Quality control figures for the ATAC-seq data described in Loh and Chen et al., Cell (http://www.cell.com/cell/abstract/S0092-8674(16)30740-1).
DOI: 10.6084/m9.figshare.3506888
title: Dealing With Data in a New Era of Research Data Management: Some Amsterdam Observations

description: Slides and text of a presentation for the Digital Science Webinar 'Dealing With Data in a New Era of Research Data Management' on August 1st, 2016.
DOI: 10.6084/m9.figshare.3506888.v1
title: Dealing With Data in a New Era of Research Data Management: Some Amsterdam Observations

description: Slides and text of a presentation for the Digital Science Webinar 'Dealing With Data in a New Era of Research Data Management' on August 1st, 2016.
DOI: 10.6084/m9.figshare.3506822
title: Iigaya et al PLoS ONE 2016 - Data for all sessions

description: The data_files.zip folder contains data for all 48 subjects as used in the Matlab analysis of Sessions 1-3. Each subject's data are in a separate excel file with the subject number (two digits) followed by _output as the filename. Each excel file contains 3 separate sheets as follows:<br>Sheet 1: Data from Session 1 (70 trials): ambig = ambiguity of the visual stimulus (see Methods section of paper); loss = threatened loss on each trial and wins = offered win (1= 0 pence; 2=10 pence; 3=20 pence; 4=30 pence etc.); choice = key pressed (1= SAFE key; 2 = REW key)<br>Sheet 2: Data from Session 2 (10 training trials - not analysed): key as for Sheet 1<br>Sheet 3: Data from Session 3 (250 trials): key as for Sheet 1<br>A separate excel file contains 'questionnaire data' (and is given this name). In this file: Subject = subject id; PleasantUnpleasant = treatment group (pl=pleasant, un=unpleasant); Questionnnaire data are identified by measure type (ValGrid= valence score on Affect Grid; ActGrid= activation score on Affect Grid; PA= positive activation on PANS; NA= negative activation on PANAS) and whether the measure was taken at baseline (pre), after Session 1 (during) or after Session 2 (post).
DOI: 10.6084/m9.figshare.3506822.v1
title: Iigaya et al - data for all sessions

description: The data_files.zip folder contains data for all 48 subjects as used in the Matlab analysis of Sessions 1-3. Each subject's data are in a separate excel file with the subject number (two digits) followed by _output as the filename. Each excel file contains 3 separate sheets as follows:<br>Sheet 1: Data from Session 1 (70 trials): ambig = ambiguity of the visual stimulus (see Methods section of paper); loss = threatened loss on each trial and wins = offered win (1= 0 pence; 2=10 pence; 3=20 pence; 4=30 pence etc.); choice = key pressed (1= SAFE key; 2 = REW key)<br>Sheet 2: Data from Session 2 (10 training trials - not analysed): key as for Sheet 1<br>Sheet 3: Data from Session 3 (250 trials): key as for Sheet 1<br>A separate excel file contains 'questionnaire data' (and is given this name). In this file: Subject = subject id; PleasantUnpleasant = treatment group (pl=pleasant, un=unpleasant); Questionnnaire data are identified by measure type (ValGrid= valence score on Affect Grid; ActGrid= activation score on Affect Grid; PA= positive activation on PANS; NA= negative activation on PANAS) and whether the measure was taken at baseline (pre), after Session 1 (during) or after Session 2 (post).
DOI: 10.6084/m9.figshare.3506804.v1
title: Sonograms from 12/07/2016 to 20/07/2016 Panshanger Park TL 28796 13333

description: Results from deployment of SM2 at Panshanger Park at location TL 28796 13333 at ride junction in woodland between Great Oak and Stables. Deployed from 12/07/2016 until 20/07/2016
DOI: 10.6084/m9.figshare.3506792
title: Perceptual stability of the Lissajous figure is modulated by the speed of illusory rotation (Weilnhammer et al. 2016)

description: This fileset contains the raw Matlab data files (*.mat) and the corresponding Matlab script (*.m) for the analysis. It also contains data (*.csv) which were submitted to the rm-ANOVA.<br>
DOI: 10.6084/m9.figshare.3506792.v1
title: Weilnhammer et al. 2016

description: This fileset contains the raw Matlab data files (*.mat) and the corresponding Matlab script (*.m) for the analysis.<br>
DOI: 10.6084/m9.figshare.3506792.v3
title: Perceptual stability of the Lissajous figure is modulated by the speed of illusory rotation (Weilnhammer et al. 2016)

description: This fileset contains the raw Matlab data files (*.mat) and the corresponding Matlab script (*.m) for the analysis. It also contains data (*.csv) which were submitted to the rm-ANOVA.<br>
DOI: 10.6084/m9.figshare.3506792.v2
title: Perceptual stability of the Lissajous figure is modulated by the speed of illusory rotation (Weilnhammer et al. 2016)

description: This fileset contains the raw Matlab data files (*.mat) and the corresponding Matlab script (*.m) for the analysis.<br>
DOI: 10.6084/m9.figshare.3506681
title: The application of portable XRF and benchtop SEM-EDS to Cu-Pd exploration in the Coldwell Alkaline Complex, Ontario, Canada

description: Comparisons of pXRF analyses with ICP-AES, ICP-MS and IR analysis
DOI: 10.6084/m9.figshare.3506681.v1
title: The application of portable XRF and benchtop SEM-EDS to Cu-Pd exploration in the Coldwell Alkaline Complex, Ontario, Canada

description: Comparisons of pXRF analyses with ICP-AES, ICP-MS and IR analysis
DOI: 10.6084/m9.figshare.3506666
title: Clay fraction geochemistry (Cu) of till from the region of the Woodjam prospect. Till geochemistry and mineralogy: vectoring towards Cu porphyry deposits in British Columbia, Canada

description: Comparisons of pXRF analyses with ICP-AES, ICP-MS and IR analysis.
DOI: 10.6084/m9.figshare.3506666.v1
title: Till geochemistry and mineralogy: vectoring towards Cu porphyry deposits in British Columbia, Canada

description: Clay fraction geochemistry (Cu) of till from the region of the Woodjam prospect.
DOI: 10.6084/m9.figshare.3506663
title: Chalcopyrite and epidote content of the 0.25-0.5 mm and &gt;3.2 SG fraction of till from the region of the Highland Valley Copper deposit. Till geochemistry and mineralogy: vectoring towards Cu porphyry deposits in British Columbia, Canada

description: Comparisons of pXRF analyses with ICP-AES, ICP-MS and IR analysis.
DOI: 10.6084/m9.figshare.3506663.v2
title: Chalcopyrite and epidote content of the 0.25-0.5 mm and &gt;3.2 SG fraction of till from the region of the Highland Valley Copper deposit. Till geochemistry and mineralogy: vectoring towards Cu porphyry deposits in British Columbia, Canada

description: Comparisons of pXRF analyses with ICP-AES, ICP-MS and IR analysis.