cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/4dk8m-gk233
title: Sulfolobus cells synchronized for division

description: search for ESCRT in dividing cells
description: <strong>Tilt Series Date:</strong> 2010-12-03</p>
<strong>Data Taken By:</strong> Megan Dobro</p>
<strong>Species / Specimen:</strong> Sulfolobus acidocaldarius</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 2.7 eV/Å²,  defocus: -15.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> grown and synchronized by Rachel Samson in Stephen Bell's lab, Oxford University</p>
<strong>Purification / Growth Conditions / Treatment:</strong> grown in Brock's Medium at 80C, synchronize with Baby Machine</p>
<strong>Sample Preparation:</strong> frozen at Kay Grunewald's lab. Harrick plasma cleaner. Blotted on both sides, 3 sec, sponge for humidity</p>
  mdj2010-12-03-1_slicer8124.jpg: pilli
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mdj2010-12-03-1/rawdata/</p>10dec03e_Box12grid3_001new.mrc,  Tilt Series (Pixel Size 1.258 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        10dec03e_Box12grid3_001new_part.rec,  Reconstruction (Pixel Size 2.38 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.24qq5k
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chrysichthys ogooensis, Chrysichthys okae, Chrysichthys ornatus, Chrysichthys platycephalus, Chrysichthys polli, Chrysichthys punctatus, Chrysichthys sharpii, Chrysichthys stappersii, Chrysichthys teugelsi, Chrysichthys thonneri, Chrysichthys thysi, Chrysichthys turkana, Chrysichthys uniformis, Chrysichthys wagenaari, Chrysichthys walkeri, Cirrhinus cirrhosus, Citharichthys stampflii, Citharidium ansorgii, Citharinops distichodoides, Citharinus citharus, Citharinus congicus, Citharinus eburneensis, Citharinus gibbosus, Citharinus latus, Citharinus macrolepis, Clariallabes attemsi, Clariallabes brevibarbis, Clariallabes centralis, Clariallabes heterocephalus, Clariallabes laticeps, Clariallabes longicauda, Clariallabes manyangae, Clariallabes melas, Clariallabes mutsindoziensis, Clariallabes petricola, Clariallabes platyprosopos, Clariallabes simeonsi, Clariallabes teugelsi, Clariallabes uelensis, Clariallabes variabilis, Clarias agboyiensis, Clarias albopunctatus, Clarias alluaudi, Clarias angolensis, Clarias anguillaris, Clarias buettikoferi, Clarias buthupogon, Clarias camerunensis, Clarias cavernicola, Clarias dhonti, Clarias dumerilii, Clarias ebriensis, Clarias engelseni, Clarias gabonensis, Clarias gariepinus, Clarias hilli, Clarias jaensis, Clarias laeviceps, Clarias lamottei, Clarias liocephalus, Clarias longior, Clarias maclareni, Clarias macromystax, Clarias ngamensis, Clarias nigromarmoratus, Clarias pachynema, Clarias platycephalus, Clarias salae, Clarias stappersii, Clarias submarginatus, Clarias theodorae, Clarias werneri, Clarotes laticeps, Clupeocharax schoutedeni, Clypeobarbus bellcrossi, Clypeobarbus bomokandi, Clypeobarbus congicus, Clypeobarbus hypsolepis, Clypeobarbus matthesi, Clypeobarbus pleuropholis, Clypeobarbus pseudognathodon, Clypeobarbus schoutedeni, Cobitis maroccana, Coelotilapia joka, Congocharax olbrechtsi, Congochromis dimidiatus, Congochromis pugnatus, Congochromis sabinae, Congochromis squamiceps, Congoglanis alula, Congolapia bilineata, Congothrissa gossei, Congresox talabonoides, Copadichromis atripinnis, Copadichromis azureus, Copadichromis borleyi, Copadichromis chizumuluensis, Copadichromis chrysonotus, Copadichromis cyaneus, Copadichromis cyanocephalus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((6.524 -0.514,7.0065 -0.2456,7.2624 0.2943,7.123 0.7051,6.6607 0.9135,6.1391 0.6726,5.9617 0.2289,6.1206 -0.3209,6.524 -0.514))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007280-250827131500795/datasets/export for details.
DOI: 10.22002/f3kem-ayj79
title: Calubactor EB session22 27.5KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-08-07</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Cultured by Zhuo/Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media, EB 0.02mg/ml overnight 4degree...</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-08-07-5/rawdata/</p>09aug07a_b266c_013.mrc,  Tilt Series (Pixel Size 0.774 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        09aug07a_b266c_013_full.rec,  Reconstruction (Pixel Size 1.548 nm), 419.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.tyqbf4
title: Occurrence Download

description: A dataset containing 102723 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is National monitoring program for non-indigenous species (NIS), Sweden 2024"
 ]
}

 The dataset includes 102723 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007260-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/casap-krd91
title: MamJ deletion (and might contain

description: Raw data files of MamJ deletion (and might contain
description: <strong>Tilt Series Date:</strong> 2010-02-18</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Magnetospirillum magneticum</p>
<strong>Strain:</strong> AMB-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1.5°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: -15.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR and Peach</p>
<strong>Collaborators and Roles:</strong> Cell culture were from Arash Komeili. Upon receiving, cells were frozen in 2 hours. Meanwhile they were kept in 30C. Data collected and processed by ZL.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Stationary phase. </p>
<strong>Sample Preparation:</strong> R2/2, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2010-02-18-70/rawdata/</p>10feb18a_dJnofe5_070.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        10feb18a_dJnofe5_070_full.rec,  Reconstruction (Pixel Size 2.384 nm), 524.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.qb6zg5
title: Occurrence Download

description: A dataset containing 26586 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Galeopsis ladanum"
 ]
}

 The dataset includes 26586 records from 496 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007276-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/2wee9-chb18
title: Skinny E. coli DS664

description: Raw data files of Skinny E. coli DS664
description: <strong>Tilt Series Date:</strong> 2009-11-23</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -12.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD, RAPTOR, Peach</p>
<strong>Collaborators and Roles:</strong> Cells provided by Daisuke Shiomi (BW25113 yhdE_deletion mreB-A125V). Data colleted by ZL.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Exponential phase in L Broth</p>
<strong>Sample Preparation:</strong> Quantifoil R2/1 or R2/2, 10 nm gold, 100% humidity</p>
  zla2009-11-23-69_slicer7965.jpg: filament .  Escherichia coli
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-23-69/rawdata/</p>09nov23a_DS664_069.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        09nov23a_DS664_069_part.rec,  Reconstruction (Pixel Size 2.384 nm), 471.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-23-69/3dimage_9763/09nov23a_DS664_069_part.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/p0jd0-5a577
title: Wild type w/ iron

description: Raw data files of Wild type w/ iron
description: <strong>Tilt Series Date:</strong> 2009-10-21</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Magnetospirillum magneticum</p>
<strong>Strain:</strong> AMB-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: -15.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach, IMOD</p>
<strong>Collaborators and Roles:</strong> Cells provided by Arash Komeili, Data collected by ZL</p>
<strong>Purification / Growth Conditions / Treatment:</strong> (Probably) Stationary phase</p>
<strong>Sample Preparation:</strong> Quantifoil R2/1 or R2/2, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-10-21-10/rawdata/</p>09oct21a_AMB1_010.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        09oct21a_AMB1_010_part.rec,  Tilt Series (Pixel Size 1.192 nm), 471.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.mqyacq
title: Occurrence Download

description: A dataset containing 18036 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Cherleria sedoides"
 ]
}

 The dataset includes 18036 records from 152 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007279-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/y6gdh-3hr54
title: Hyphomonas EB session17 27.5KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-06-07</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media, EB 0.01mg overnight at 4degree...</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-06-07-11/rawdata/</p>09jun07a_bx675a_012.mrc,  Tilt Series (Pixel Size 0.774 nm), 989.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        09jun07a_bx675a_012_1k.rec,  Reconstruction (Pixel Size 1.548 nm), 323.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/xb7zg-2ab64
title: MT-MreB treated w/ aurothiogluco

description: Raw data files of MT-MreB treated w/ aurothiogluco
description: <strong>Tilt Series Date:</strong> 2009-07-21</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR Peach</p>
<strong>Collaborators and Roles:</strong> Cell culture and treatment by Zhuo Li. Data collected by Zhuo Li. Processed by Zhuo Li. </p>
<strong>Purification / Growth Conditions / Treatment:</strong> Exponentially growing MT310 cells were treated with 50 uM aurothioglucose for 20 hours before freezing. </p>
<strong>Sample Preparation:</strong> 10 nm gold. </p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-07-21-44/rawdata/</p>09jul21a_mtmrebaurothio_008.mrc,  Tilt Series (Pixel Size 1.2 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        09jul21a_mtmrebaurothio_008_part.rec,  Reconstruction (Pixel Size 2.4 nm), 367.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.2qzrez
title: Occurrence Download

description: A dataset containing 999 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chrysichthys ogooensis, Chrysichthys okae, Chrysichthys ornatus, Chrysichthys platycephalus, Chrysichthys polli, Chrysichthys punctatus, Chrysichthys sharpii, Chrysichthys stappersii, Chrysichthys teugelsi, Chrysichthys thonneri, Chrysichthys thysi, Chrysichthys turkana, Chrysichthys uniformis, Chrysichthys wagenaari, Chrysichthys walkeri, Cirrhinus cirrhosus, Citharichthys stampflii, Citharidium ansorgii, Citharinops distichodoides, Citharinus citharus, Citharinus congicus, Citharinus eburneensis, Citharinus gibbosus, Citharinus latus, Citharinus macrolepis, Clariallabes attemsi, Clariallabes brevibarbis, Clariallabes centralis, Clariallabes heterocephalus, Clariallabes laticeps, Clariallabes longicauda, Clariallabes manyangae, Clariallabes melas, Clariallabes mutsindoziensis, Clariallabes petricola, Clariallabes platyprosopos, Clariallabes simeonsi, Clariallabes teugelsi, Clariallabes uelensis, Clariallabes variabilis, Clarias agboyiensis, Clarias albopunctatus, Clarias alluaudi, Clarias angolensis, Clarias anguillaris, Clarias buettikoferi, Clarias buthupogon, Clarias camerunensis, Clarias cavernicola, Clarias dhonti, Clarias dumerilii, Clarias ebriensis, Clarias engelseni, Clarias gabonensis, Clarias gariepinus, Clarias hilli, Clarias jaensis, Clarias laeviceps, Clarias lamottei, Clarias liocephalus, Clarias longior, Clarias maclareni, Clarias macromystax, Clarias ngamensis, Clarias nigromarmoratus, Clarias pachynema, Clarias platycephalus, Clarias salae, Clarias stappersii, Clarias submarginatus, Clarias theodorae, Clarias werneri, Clarotes laticeps, Clupeocharax schoutedeni, Clypeobarbus bellcrossi, Clypeobarbus bomokandi, Clypeobarbus congicus, Clypeobarbus hypsolepis, Clypeobarbus matthesi, Clypeobarbus pleuropholis, Clypeobarbus pseudognathodon, Clypeobarbus schoutedeni, Cobitis maroccana, Coelotilapia joka, Congocharax olbrechtsi, Congochromis dimidiatus, Congochromis pugnatus, Congochromis sabinae, Congochromis squamiceps, Congoglanis alula, Congolapia bilineata, Congothrissa gossei, Congresox talabonoides, Copadichromis atripinnis, Copadichromis azureus, Copadichromis borleyi, Copadichromis chizumuluensis, Copadichromis chrysonotus, Copadichromis cyaneus, Copadichromis cyanocephalus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((28.1382 -6.9401,19.1382 -6.9401,19.1382 -15.9401,28.1382 -15.9401,28.1382 -6.9401))"
 ]
}

 The dataset includes 999 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007281-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/pqars-w6a09
title: Hyphomonas EB session14 27.5KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-05-22</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-62.0°, 62.0°), step: 2°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: -7.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media, treated with EB...</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-05-22-15/rawdata/</p>09may22a_bx200d_018.mrc,  Tilt Series (Pixel Size 0.774 nm), 520.1 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        09may22a_bx200d_018_1k.rec,  Reconstruction (Pixel Size 1.548 nm), 68.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/k5erw-r2d88
title: Bacillus subtilis ponA mutant

description: ponA muntant of B. subtilis induced for competence
description: <strong>Tilt Series Date:</strong> 2013-06-28</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> MJ007, ponA null</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-55.0°, 55.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> David Dubnau</p>
<strong>Purification / Growth Conditions / Treatment:</strong> cells grown in competence medium</p>
<strong>Sample Preparation:</strong> vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-06-28-6/rawdata/</p>bcomp0008.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.2 GB  
        
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        bcomp0008_part111_1.rec,  Reconstruction (Pixel Size 1.92 nm), 801.8 MB  
        
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