cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28870046.v1
title: carbon in cattle USA.xlsx

description: Mentions, net sentiment, and major drivers of discussions of livestocks and environmental footprints.
DOI: 10.15468/dl.rcb78n
title: Occurrence Download

description: A dataset containing 586388 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation)",
 "Geometry POLYGON((-77.31715 3.69435,-76.25999 3.69435,-76.25999 4.00945,-77.31715 4.00945,-77.31715 3.69435))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 586388 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001563-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15282443
title: cynopoecilus_intimus_spades_01.fasta.gz
DOI: 10.5281/zenodo.15282444
title: cynopoecilus_intimus_spades_01.fasta.gz
DOI: 10.15468/dl.4kwyk4
title: Occurrence Download

description: A dataset containing 302 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Spain",
 "TaxonKey is Orchis conica Willd."
 ]
}

 The dataset includes 302 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013840-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wbpna7
title: Occurrence Download

description: A dataset containing 85 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen, Living Specimen)",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Phellodendron amurense Rupr."
 ]
}

 The dataset includes 85 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013834-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tfjuww
title: Occurrence Download

description: A dataset containing 7130 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-72.77115 -41.50042,-72.59093 -41.50042,-72.59093 -41.26223,-72.77115 -41.26223,-72.77115 -41.50042))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 7130 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009794-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15473288
title: 30 Semi-Synthetic Data Sets for X-ray Diffraction Error Analysis

description: Datasets as described several years ago in

https://journals.iucr.org/d/issues/2016/04/00/gm5043/index.html#SEC10

30 low-dose data sets (i.e. a `large' number) were recorded sequentially on beamline I04 at Diamond Light Source with identical data-collection parameters (1027 images per data set from a Pilatus 6M detector with an image width of 0.15° and 1% beam transmission at a wavelength of 1.2 Å). Scaling all of the data together indicated that radiation damage across the 30 sweeps was small; however, some systematic differences between them remained owing to factors such as beam-intensity variation.

The photon counts from these 30 `original' sweeps were then `reshuffled' to create a population of 30 equivalent `new' data sets (for convenience, to allow reuse of the image headers) by considering every active pixel in the data set (i.e. each of around six billion) independently using the following procedure. Firstly, create a summed data set, which we call `total':

for image in range(1027):
  for pixel in image:
    total[image][pixel] = sum(images[j][image][pixel] for j in range(30))

Then create 30 `new' data sets with every pixel set initially to 0, and randomly redistribute each photon count from every pixel of the `total' set to the same pixel position in one of the 30 `new' sets:

for image in range(1027):
  for pixel in image:
    for k in range(total[image, pixel]):
      rnd = random(30)
      rebin[rnd, image, pixel] += 1
DOI: 10.5281/zenodo.15473289
title: 30 Semi-Synthetic Data Sets for X-ray Diffraction Error Analysis

description: Datasets as described several years ago in

https://journals.iucr.org/d/issues/2016/04/00/gm5043/index.html#SEC10

30 low-dose data sets (i.e. a `large' number) were recorded sequentially on beamline I04 at Diamond Light Source with identical data-collection parameters (1027 images per data set from a Pilatus 6M detector with an image width of 0.15° and 1% beam transmission at a wavelength of 1.2 Å). Scaling all of the data together indicated that radiation damage across the 30 sweeps was small; however, some systematic differences between them remained owing to factors such as beam-intensity variation.

The photon counts from these 30 `original' sweeps were then `reshuffled' to create a population of 30 equivalent `new' data sets (for convenience, to allow reuse of the image headers) by considering every active pixel in the data set (i.e. each of around six billion) independently using the following procedure. Firstly, create a summed data set, which we call `total':

for image in range(1027):
  for pixel in image:
    total[image][pixel] = sum(images[j][image][pixel] for j in range(30))

Then create 30 `new' data sets with every pixel set initially to 0, and randomly redistribute each photon count from every pixel of the `total' set to the same pixel position in one of the 30 `new' sets:

for image in range(1027):
  for pixel in image:
    for k in range(total[image, pixel]):
      rnd = random(30)
      rebin[rnd, image, pixel] += 1
DOI: 10.25326/cq7j-jz53
title: n-dodecane + OH - Gas-phase oxidation - kinetic study - 2014-04-24

description: Publication of the dataset
DOI: 10.25326/jsxh-fq66
title: n-dodecane + OH - Gas-phase oxidation - kinetic study - 2014-04-25

description: Publication of the dataset
DOI: 10.25326/2t5v-3k43
title: 3-Carene + OH - Aerosol study - particle formation - 2019-03-05

description: Publication of the dataset
DOI: 10.25326/ymph-ts49
title: 3-carene + OH - Aerosol study - particle formation - 2019-03-06

description: Publication of the dataset
DOI: 10.25326/4ppy-sp87
title: 3-carene + O3 - Aerosol study - particle formation - 2019-03-08

description: Publication of the dataset
DOI: 10.25326/x0tx-7w05
title: 3-carene + O3 - Aerosol study - particle formation - 2019-03-12

description: Publication of the dataset
DOI: 10.25326/ts40-bp62
title: 3-carene + OH - Aerosol study - particle formation - 2019-03-14

description: Publication of the dataset
DOI: 10.25326/zrm3-2q88
title: 3-carene + OH - Aerosol study - particle formation - 2019-03-18

description: Publication of the dataset
DOI: 10.25326/8eya-k980
title: ozone + OH - Aerosol study - particle formation - 2016-02-08

description: Publication of the dataset
DOI: 10.25326/smez-q786
title: + None - Other - 2018-10-24

description: Publication of the dataset
DOI: 10.15468/dl.eabnkj
title: Occurrence Download

description: A dataset containing 97067 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Eschscholzia californica Cham."
 ]
}

 The dataset includes 97067 records from 759 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009812-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16959938
title: Number and density of Linear Kinematic Features detected  in a high-resolution ice-ocean model from 1992 to 2019
DOI: 10.5281/zenodo.16959939
title: Number and density of Linear Kinematic Features detected  in a high-resolution ice-ocean model from 1992 to 2019
DOI: 10.15468/dl.tz28md
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xenodermichthys Günther, 1878",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((27.0623 31.9334,26.9648 31.9498,26.9648 28.8496,35.2246 28.8496,35.4082 29.442,34.5107 31.7446,34.2089 31.83,33.6449 31.6171,32.7153 31.5989,32.1134 31.9914,31.0159 32.1003,30.233 31.9935,29.1426 31.3343,27.0623 31.9334))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010752-250525065834625/datasets/export for details.
DOI: 10.7910/dvn/kmid0k
title: Improving handwashing and food hygiene behaviors for infant and young child feeding in rural Malawi

description: This United States Agency for International Development (USAID) Water, Sanitation, and Hygiene Partnerships and Learning for Sustainability (WASHPaLS) #2 study focused on handwashing (HW) and food hygiene (FH) during complementary feeding, an under-researched area critical to infant and young child (IYC) health, with little existing evidence on effective interventions. The formative research study aimed to identify an acceptable, feasible, and desirable intervention package to support caregivers’ improved performance of HW and FH behaviors concerning preparation and feeding of complementary foods for IYC. The study had two objectives: Objective 1 was to validate the points in food preparation and consumption that are critical to reducing the consumption of pathogens both directly and indirectly by IYC. Objective 2 aimed to use co-design methods to identify and field test acceptable, feasible, and desirable HW and FH hardware products and behavior change communication (BCC) approaches to address the critical control points identified under the first objective to support HW and FH behaviors by caregivers. The WASHPaLS #2 team conducted this mixed-methods study in Mpama and Onga traditional authorities (TAs) of Chiradzulu district, Malawi. Data collection was implemented in three complementary and sequential steps. Focus Group Discussions (FGDs), in-depth interviews (IDIs), and observations addressed the first objective of validating the Hazard Analysis and Critical Control Points (HACCP) (Step 1), while FGDs with product fairs and community workshops (Step 2) and a trial of improved practices (TIPs; Step 3) addressed the second objective of co-designing and testing the feasible and acceptable intervention package. We present quantitative data from Step 3—TIPs, here. The study was approved by the FHI 360’s Office of International Research Ethics and the National Committee on Research in the Social Sciences & Humanities in Malawi.
DOI: 10.15468/dl.mpsx8v
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Winteria telescopa Brauer, 1901",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((26.9648 19.8496,17.9648 19.8496,17.9648 10.8496,26.9648 10.8496,26.9648 19.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009967-250525065834625/datasets/export for details.
DOI: 10.5061/dryad.crjdfn32p
title: Chromosome-level genome assembly of Poropuntius huangchuchieni

description: Poropuntius huangchuchieni is a diploid species in the family cyprinid,
 widely distributed in Mekong and Red River basins. Previous study
 suggested that it is one of the most closely related diploid ancestral
 species to common carp, which has allotetraploidized genome generated by
 merging two diploid genomes during evolution. Therefore, P. huangchuchieni
 is an ideal diploid model for polyploid evolution study in Cyprinidae.
 Here, we report a high-quality chromosome-level genome assembly of P.
 huangchuchieni by the integrating of the Oxford Nanopore Technology and
 Hi-C technology. The assembled genome size was 1021.38 Mb with a scaffold
 N50 of 32.93 Mb. More than 47.61% of the genome was identified as
 repetitive elements, and 895.66 Mb sequences were anchored onto 25
 chromosomes. Of the 24,099 predicted protein-coding genes, 97.57% were
 functional annotated. Approximately 95.9% of complete BUSCOs were detected
 in the genome.The high-quality genomic data of P. huangchuchieni provides
 an ancestral diploid reference for the evolution and adaptation of
 allotetraploid carps.
description: Here, we report a high-quality chromosome-level genome assembly
 of <i>P. huangchuchieni</i> by the integrating of the Oxford
 Nanopore Technology and Hi-C technology. A total of 76.06 Gb of Nanopore
 long reads and 247.72 Gb Illumina data were used for high-accuracy
 assembly and annotation.
DOI: 10.5061/dryad.jm63xsj83
title: Local and regional drivers influence how aquatic community diversity, resistance and resilience vary in response to drying

description: Disturbance events govern how the biodiversity of ecological communities
 varies in both space and time. In freshwater ecosystems, there is evidence
 that local and regional-scale drivers interact to influence ecological
 responses to drying disturbances. However, most research provides temporal
 snapshots at the local scale, whereas few studies encompass a gradient of
 drying severity spanning multiple years. Using a dataset of rare
 spatiotemporal extent and detail, we demonstrate how independent and
 interacting local and regional-scale factors drive shifts in the α and β
 diversities of communities in dynamic river ecosystems. We examined
 aquatic invertebrate assemblage responses to hydrological variability (as
 characterized by monthly observations of instream conditions) at 30 sites
 over a 12-year period encompassing typical years and two severe drought
 disturbances. Sites varied in their disturbance regimes and hydrological
 connectivity at both local (i.e. site-specific) and regional (i.e. river
 catchment) scales. Whereas α diversity was mainly influenced by local
 factors including flow permanence and the temporal extent of ponded and
 dry conditions, both temporal and spatial β diversities also responded to
 regional-scale metrics such as the spatial extent of flow and hydrological
 connectivity. We observed stronger local negative responses by taxa with
 lower capacities to tolerate drying (i.e. resistance) and/or to recover
 after flow resumes (i.e. resilience), whereas taxa with functional traits
 promoting resilience made an increasing contribution to spatial β
 diversity as hydrological connectivity declined. As droughts increase in
 extent and severity across global regions, our findings highlight the
 functional basis of taxonomic responses to disturbance and connectivity,
 and thus advance understanding of how drying disturbances shape
 biodiversity in river networks. Our identification of the role of regional
 hydrological factors could inform catchment-scale management strategies
 that support ecosystem resilience in a context of global change.
DOI: 10.5061/dryad.15dv41nvx
title: Data from: Uncovering genetic mechanisms of hypertension through multi-omic analysis of the kidney

description: The kidney is an organ of key relevance to blood pressure (BP) regulation,
 hypertension and antihypertensive treatment. However, genetically mediated
 renal mechanisms underlying susceptibility to hypertension remain poorly
 understood. We integrated genotype, gene expression, alternative splicing
 and DNA methylation profiles of up to 430 human kidneys to characterise
 the effects of BP index variants from genome-wide association studies
 (GWAS) on renal transcriptome and epigenome. We uncovered kidney targets
 for 479 (58.3%) BP-GWAS variants and paired 49 BP-GWAS kidney genes with
 210 licensed drugs. Our colocalisation and Mendelian randomisation
 analyses identified 179 unique kidney genes with evidence of putatively
 causal effects on BP. Through Mendelian randomisation we uncovered effects
 of BP on renal outcomes commonly affecting hypertensive patients.
 Collectively, our studies identified genetic variants, kidney genes,
 molecular mechanisms and biological pathways of key relevance to the
 genetic regulation of BP and inherited susceptibility to hypertension.
  
description: Please see the Methods section of the associated publication for
 full details. Gene expression and alternative splicing
 data are derived from poly-A RNA-sequencing. DNA
 methylation data are derived from the Illumina Infinium
 HumanMethylation450 BeadChip. All data sets are the
 normalised values used for QTL testing with FastQTL.
 All values have been quantile normalised and transformed by the
 rank-based inverse normal method.  
description: Please see the Methods section of the associated publication for
 full details. <strong>Gene
 expression</strong> Gene IDs map to ensembl
 v83 Values are normalised and transformed
 log<sub>2</sub>(TPM+1) expression at the
 gene-level, calculated by Kallisto.
 <strong>Alternative splicing</strong>
 Intron excision isoform IDs map to GRCh38 coordinates.
 Values are normalised and transformed intron usage
 ratios calculated by Leafcutter. <strong>DNA
 Methylation</strong> CpG IDs map to the Illumina
 IDs supplied in the Infinium HumanMethylation450 BeadChip manifest
 file. Values are normalised and transformed M-values
 calculated by the R package minfi
DOI: 10.15468/dl.jpv3xa
title: Occurrence Download

description: A dataset containing 990047 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gobio gobio"
 ]
}

 The dataset includes 990047 records from 457 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002508-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.h44j0zphj
title: Productivity loss associated with physical impairment in a contemporary small-scale subsistence population

description: Humans experience unique physical impairments with potentially severe
 economic consequences. Quantifying the burden of impairment in subsistence
 populations is critical for understanding selection pressures underlying
 strategies that minimize risk of production deficits. We examine among
 forager-horticulturalists whether compromised bone strength (indicated by
 vertebral fracture and lower bone mineral density, BMD) is associated with
 diminished subsistence involvement. We estimate the magnitude of
 productivity losses associated with compromised bone strength. Fracture is
 associated with cessation of hunting, tree chopping and walking long
 distances, but not tool manufacture. Age-specific productivity losses from
 hunting cessation related to fracture and lower BMD are substantial.
 Productivity loss is thus substantial for high strength and endurance
 tasks. Determining the extent to which impairment obstructs productivity
 in contemporary subsistence populations improves the ability to infer
 consequences of impairment over human evolution.
description: Missing values are blank. See attached ReadMe file for variable
 definitions.
DOI: 10.5061/dryad.fn2z34trw
title: Data from: Settling dynamics of nanoparticles in simple and biological media

description: The biological response of organisms exposed to nanoparticles is often
 studied in vitro using adherent monolayers of cultured cells. In order to
 derive accurate concentration-response relationships, it is important to
 determine the local concentration of nanoparticles to which the cells are
 actually exposed rather than the nominal concentration of nanoparticles in
 the cell-culture medium. In this study, the sedimentation–diffusion
 process of different sized and charged gold nanoparticles has been
 investigated in vitro by evaluating their settling dynamics and by
 developing a theoretical model to predict the concentration depth-profile
 of nanoparticles in solution over time. Experiments were carried out in
 water and in cell-culture media at a range of controlled temperatures. The
 optical phenomenon of caustics was exploited to track nanoparticles in
 real-time in a conventional optical microscope without any requirement for
 fluorescent labelling that potentially affects the dynamics of the
 nanoparticles. The results obtained demonstrate that size, temperature and
 the stability of the nanoparticles play a pivotal role in regulating
 settling dynamics of nanoparticles. For gold nanoparticles larger than 60
 nm in diameter, the initial nominal concentration did not accurately
 represent the concentration of nanoparticles local to the cells.
description: The dataset consist of TIF files related to the raw z-stacks
 aquired of the gold nanoparticles suspension tested. Each TIF file
 contains images acquired progressively from the bottom (1st image at 0 μm)
 to the top (last image at 250 μm ± 10 μm) of each nanoparticles suspension
 at a given acquisition time. For more info related to the technique used
 to acquire the images please refer to the original manuscript.
 The file name of each TIF file contains all the information
 related to the nanoparticles and solution properties and of the time step
 of acquisition: File_name=
 size_charge_solution_temperature_acquisition time
DOI: 10.5061/dryad.p8cz8w9nc
title: United we stand: evolution of increased competitive response and defense in response to crowding in an invasive plant

description: 1. The evolution of increased competitive ability (EICA) hypothesis
 predicts that invasive plant could evolve to be more competitive but be
 less defended as a result of releasing from their natural enemies, yet
 this hypothesis has rarely been addressed in density-dependence. 2. Here,
 we grew five native (Argentina) and five introduced (USA) genotypes of
 perennial herb invasive plant Alternanthera philoxeroides, using an
 experimental setup that simulated different levels of neighbours heights
 and densities. 3. Our results showed that introduced and native genotypes
 responded differently to changes in density: when neighbours were denser,
 introduced genotypes showed increases in total biomass, trichome density
 and triterpenoid saponins than native genotypes, but constants in
 shade-avoidance-related traits. 4. Contrary to the predictions of EICA
 hypothesis, our findings contribute to a new pattern of both increased
 competitive response and defense in introduced populations in response to
 crowding, and highlight the importance of  positive
 density-dependence in understanding invasive plant–plant interactions.