cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8424935.v1
title: Mapping of ISGC SNP chip probes

description: Probe sequences were taken from the Illumina manifests and mapped onto the Rambouillet genome (GCA_002742125.1) using bwa mem v0.7.17-r1188 with default settings (Indels were ignored)<br>For each SNP a probe pair was constructed by using AlleleA_ProbeSeq and appending either the reference or the alternative allele. <br>Only probe pairs where accepted that passed following filters.<br>-both probes are mapped<br>-one probe is mapped with 0 mismatches<br>-both probes are not multi-mapped<br>-no indels were allowed<br>-both probes had to map in the same orientation<br>-both probes had to map to the same position<br>-mapped probes had between them exactly 1 mismatch, the SNP.<br>Any data shared here is without warranty of any kind and in no event shall the authors or copyright holders be liable for any claim, damages or any liability.
DOI: 10.60893/figshare.pof.26944645.v1
title: Supplement Number 1

description: Additional figures and complete dataset provided as supplementary material
DOI: 10.17632/jnm3s3ms58
title: Data for the paper Crystalline phases, relative masses and stoichiometry of mixed oxide cathodes determined by XRD and XRF measurements

description: X-ray diffraction and energy dispersion X-ray fluorescence data for cathode materials of Li-ion batteries. Samples named as Blend, Cath1, Cath2, Cath3.
DOI: 10.17632/mvnwgvht9y
title: Data for: Four-decision tests for stochastic dominance, with an application to environmental psychophysics

description: Dataset used in the paper "Four-decision tests for stochastic dominance, with an application to environmental psychophysics" by Angel G. Angelov, Magnus Ekström, Bengt Kriström, & Mats E. Nilsson. The data are from an experiment where participants were asked about their willingness to pay for an improved residential sound environment (traffic noise reduction). Each participant was requested to answer by means of: (i) a self-selected point (SSP), i.e., the amount in Swedish kronor he/she would be willing to pay per month for the improvement, and (ii) a self-selected interval (SSI), i.e., the lowest and highest amounts he/she would be willing to pay. Description of the variables and some remarks are given in a separate file.
DOI: 10.25381/cput.22630561.v1
title: The impact of emotional intelligence as a motivator to facilitate successful execution of technological projects in the Cape Metropolis - Data Set

description: No | 2022_FBMSREC 036 <br> The dataset that I am uploading contains the following information: <br> - Professional biography of participants - A likehart scale that identifies the participants knowledge of emotional intelligence, project management, the impact of emotional intelligence on daily operations, motivation and followership. - Open ended questions around emotional intelligence.
DOI: 10.6084/m9.figshare.22691164.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.3205750.v1
title: A genome wide assessment of stages of elevational parapatry in Bornean passerine birds reveals no introgression: implications for processes and patterns of speciation

description: Demultiplexed raw Illumina HISEQ-2500 100 base pair single end reads, barcodes removed leaving 96 base pair including RAD (NDE1) cut site.<br>
DOI: 10.6084/m9.figshare.9773843.v2
title: R command history in MetaboanalystR - NAFLD

description: R history<br>
DOI: 10.17605/osf.io/c8pfw
title: German Media and Political Twitter Accounts

description: The datasets were collected to explore the discussions by German media and political accounts on the social media platform X. The sampling strategy comprised: 
(1) accounts of parties and politicians in the German Bundestag based on the Database of public speakers (DBoeS) of the Social Media Observatory (Schmidt et al., 2023)
(2) accounts of German traditional media outlets and journalists that wrote for these outlets (names were collected via the Factiva database)
(3) accounts from the Bundespressekonferenz based on the Database of public speakers (DBoeS) of the Social Media Observatory (Schmidt et al., 2023)
(4) accounts of tech blogs based on the repository by the Digital Dictionary of the German Language (DWDS) (Barbaresi & Pohlmann, 2021)
DOI: 10.17632/s3s4ft92wj
title: Data for Spring Barley from Nordic Seed A/S

description: A total of 2,628 plots of 565 spring malting barley lines from Nordic Seed A/S were investigated. Phenotypic records were available for six malting quality traits: filtering speed, wort clearness, extract yield, wort color, beta glucan, and wort viscosity. Each line had 3,889 dense genomic markers. In addition, 24,018 metabolomic features (MFs) were obtained for each sample from nuclear magnetic resonance spectra for wort samples produced from each experimental plot. Around one third of all MFs were significantly heritable, among which a considerable proportion had significant additive genetic and/or phenotypic correlations with the malting quality traits (wort color, wort viscosity and beta glucan) in spring barley. The results from this study indicate that many of the MFs are heritable and MFs have great potential to be used in breeding barley for high malting quality. These datasets include genotypic data for each line, phenotypic data for malting quality traits and metabolomic data for each plot.
DOI: 10.6084/m9.figshare.28723178.v1
title: CD34<sup>+</sup> sorted hematopoietic stem and progenitor cells - processed

description: Dataset of 6881 CD34<sup>+</sup> sorted hematopoietic stem and progenitor cells from the the original publication SEACells infers transcriptional and epigenomic cellular states from single-cell genomics data. The data has been preprocessed following a standard steps for analysing single-cell RNA-seq measurements, and includes the normalized, log1p transformed counts, PCA embedding, k-nearest neighbor graph and UMAP embedding. The data also inlcudes pseudotime estimates inferred with Palantir.Please also cite the original publication if using this data in your own work: https://doi.org/10.1038/s41587-023-01716-9.
DOI: 10.6084/m9.figshare.28831538.v1
title: RegChat_Real_Datasets

description: RegChat is a computational method, which perform Multi-layer network Inference based on Multi-Omics single-cell datasets through graph-regularized neural network and heterogenous graph attention neural network.
DOI: 10.6084/m9.figshare.785718.v2
title: ssmarina R-system package

description: This is a package for R-system (www.r-project.org) that implements the master regulator analysis algorithm (marina) and the optimized version for single-sample analysis (ssmarina).
DOI: 10.17632/fn3w9gnr4d
title: JAAD Identification of the Pigments Used in Permanent Makeup and Their Ability to Elicit Allergic Contact Dermatitis Supplemental Materials

description: Supplemental Tables for "Identification of the Pigments Used in Permanent Makeup and Their Ability to Elicit Allergic Contact Dermatitis"
DOI: 10.17632/jkpr8c3w9b
title: URBAN FORESTRY FOR CLIMATE RESILIENCE IN THE MID-HILL REGIONS OF NEPAL

description: This dataset provides information on Carbon sequestration potential of urban trees of ring road of Kathmandu valley, Nepal.
DOI: 10.6084/m9.figshare.20640756.v3
title: Data analysis code of spider monkeys' saliva

description: R code for the data analysis of spider monkeys saliva
DOI: 10.6084/m9.figshare.20764678.v1
title: Forest canopy and forest floor data

description: enzyme activity, ecoenzymatic stoichiometry, environmental factors
DOI: 10.6084/m9.figshare.23617767.v1
title: A Critical Evaluation of Deep-Learning Based Phylogenetic Inference Programs Using Simulated Data Sets

description: This repository contains 7 optimized machine learning models (7 on CNN and 6 on PhyDL), their training data and data sets simulated for PhtDL and Tree_learning (CNN) evaluation.Each folder corresponds to each topic in our study:Folder "Simulated data for PhyDL inference" contains test data sets used to evaluate PhyDL models under LBA (simuLBA.LGFG, simuLBA.C20F.1050sites and simuLBA.C60F.1098sites) and LBR (simuLBR.LGFG, simuLBR.C20F.1050sites and simuLBR.C60F.1098sites) conditions. Moreover, the trees employed for simulating these datasets are documented in simuLBA.fourtaxa and simuLBR.fourtaxa, with each tree corresponding to 100 alignments. For instance, simuLBA.1050sites.2.3.16 indicates that this alignment is the 16th one simulated from tree LBA.tre.2.3. Note that aignments simulated under LG+C20+F+Γ and LG+C60+F+Γ are in PHYLIP format, alignments simulated under LG+F+Γ are in fasta format.Folder "Simulated data for CNN inference" contains test data sets used in general evaluation of CNN (BL.INDEL.1000.tar.bz2 and BL.INDEL.1000.tar.bz2) and data sets under 13 regions in branch-length space(REGIONS.INDEL.1000.tar.bz2 and REGIONS.NOGAP.1000.tar.bz2).Folder “CNN_Training_data” contains data sets used to train CNN_NOGAP.Ori, CNN_FA and CNN_FE. For CNN_NOGAP.Extragaps and CNN_INDEL.Extragap, training data was generated by randomly replace 10% of characters with gaps in original data (i.e., the training data of CNN_NOGAP.Ori and CNN_INDEL.Ori).Note that CNN50K (Suvorov et al., 2020) is named as CNN_INDEL.Ori here.Folder “PhyDL_Training_data” contains training and validation data sets used to train DNN_LBA10K, DNN_LBA40K, DNN_LBR10K, DNN_LBR40K, DNN_60K and DNN_160K. Alignments are attached with reference tree using ".link_to_alignment" function in ete3 package and pickled.Folder “CNN_models” and “PhyDL_models” contains newly trained models.<br>Please let me know if you have any question about them.Email: xingxingshen@zju.edu.cn<br>
DOI: 10.6084/m9.figshare.24476632.v1
title: Genomes of six pomegranate accessions, including genome fasta, cds fasta, pep fasta, and gff

description: Pomegranate (<i>Punica granatum</i> L.) is one of the most ancient edible fruit tree species. Here we reported a new chromosome-level genome assembly and annotation of sour pomegranate. We assembled the genome with a size of 331.47 Mb and used BUSCO to estimate the completeness of the assembly as 98.8%. More than 97.40% of sequences in the final assembly were anchored to 8 pseudochromosomes, higher than the corresponding percentages for the existing reference genomes ‘Tunisia’ (92.62%). Using a combination of de novo prediction, protein homology and RNA-seq annotation, 29,326 protein-coding genes were predicted. We re-annotated the protein-coding genes of five other published pomegranate genomes using the same annotation method. We constructed the pan-genome of pomegranate using protein-coding genes, integrating data from our newly assembled genome and five other published genomes. The pan-genome was composed of 28,314 gene families, of which 68.96% were core genes, 30.00% were dispensable genes, and 1.04% were private genes. The chromosome-level reference genome of sour pomegranate would be valuable resource for research and molecular breeding of pomegranate.
DOI: 10.6084/m9.figshare.28377872.v1
title: Data for "Leaf and root economics space in <i>Fraxinus mandshurica</i>: A test of the multidimensional trait framework within species"

description: Trait-based approaches provide a useful framework for characterizing plant strategies and predicting plant performance. However, these approaches have mainly been based on species trait means, thus ignoring the important role of intraspecific trait variation.We measured a suite of leaf and absorptive root traits on individuals of <i>Fraxinus mandshurica</i> in a temperate forest to explore the patterns and drivers of intraspecific trait variation and to evaluate intraspecific trait-performance relationships.Principal component analyses revealed multiple ecological strategies of plants, via variation in leaf and root traits. We found multidimensional covariation in both leaf and absorptive root traits at the intraspecific level. We found no relationship between leaf and root trait dimensions. Root trait dimensions were mainly influenced by environmental conditions, whereas leaf trait dimensions were mainly influenced by tree size. Absorptive root traits are better predictors of tree performance than leaf traits. We also found that the trait-performance relationship varied with tree size.Overall, our study emphasizes the necessity for attention to intraspecific trait variation and correlation, and contributes to a comprehensive understanding of how plants respond to multiple abiotic and biotic drivers. Additionally, we highlight the need to combine above- and below-ground traits to improve predictions of plant performance, and hence predictions of forest dynamics and ecosystem functions.<br>
DOI: 10.17632/58byj59746
title: Imaging data and 3D reconstruction of neuronal dendrites

description: Three pairs of WT and Zfp661 KO mouse littermates, including both male and female pairs aged between 60 to 66 days, were used in this assay. The brains were isolated and processed for Golgi-Cox staining using FD Rapid GolgiStain Kit (FD NeuroTechnologies, PK401) according to the manufacturer’s protocol. The pyramidal neurons in the somatomotor area of Layer 2/3 (Bregma 1.70 mm to 1.18 mm) were sampled and imaged using a Leica DM6000B (20X/0.70) microscope and LAS X software with optimal z-step of 0.52 μm and the same settings for all imaging. To better trace neuronal dendrites from Golgi-Cox staining, Z-stacked images were pre-processed using Fiji/ImageJ2 (v2.9.0/1.53t) as follows: the image format was transformed into 8-bit type, both the signals and LUT were inverted, and the scale unit was set to microns. All dendrites from sampled neurons were traced using the SNT toolbox in Fiji/ImageJ2 with the “A* search algorithm” enabled, and the trace for each dendrite was further manually verified. 

The uploaded zip file contains the mouse information, preprocessed images and neuronal dendrite traces.
DOI: 10.17632/84cc8grtkt
title: Packet-level and IEEE 802.11 MAC frame-level Network Traffic Traces Data of the D-Link IoT devices

description: This dataset presents network traffic traces data of the 14 D-Link IoT devices from different types including camera, network camera, smart-plug, door-window sensor, and home-hub. It consists of: • Network packet traces (inbound and outbound traffic) and • IEEE 802.11 MAC frame traces. The experimental testbed was set-up in the Network Systems and Signal Processing (NSSP) laboratory at Universiti Brunei Darussalam (UBD) to collect all the network traffic traces from 9th September 2020 to 10th January 2021 including an access point on a laptop. The network traffic traces were captured passively observing the Ethernet interface and the WiFi interface at the access point. In packet traces, typical communication protocols, such as TCP, UDP, IP, ICMP, ARP, DNS, SSDP, TLS/SSL etc, data are captured which IoT devices use for communication on the Internet. In the probe request frame (a subtype of management frames) traces, data are recorded which IoT devices use to connect access point on the local area network. The authors would like to thank the Faculty of Integrated Technologies, Universiti Brunei Darussalam, for the support to conduct this research experiment in the Network Systems and Signal Processing laboratory.
DOI: 10.6084/m9.figshare.12096840.v1
title: Additional file 6 of Complete genome sequence and annotation of the laboratory reference strain Shigella flexneri serotype 5a M90T and genome-wide transcriptional start site determination

description: Additional file 6: File S1. General features of the S. flexneri 5a M90T chromosome annotated with Prokka [59].
DOI: 10.6084/m9.figshare.1189469.v1
title: Grassland Quadrat Sampling Dataset

description: In this experiment, 20 quadrats of equal size were used to sample the Danby grassland region of York University. In each quadrat the visible plant species were recorded. The abundance of each species was recorded per quadrat, as well as the species richness and percent coverage. The plant species which were found included: Milkweed, Goldenrod, Purple Aster, Cow's vatch, Poa, and Leaftree.
DOI: 10.6084/m9.figshare.13204082.v1
title: README

description: README file for the data packages in the project.
DOI: 10.6084/m9.figshare.19900276.v1
title: data2_R--匹配后数据---上传.xlsx

description: Raw data
DOI: 10.17632/3k8t43xs2x
title: Mendatica landslide research data

description: Research data included in this folder represent the inclinometric data, monthly rainfall data and available InSAR data from ERS, Radarsat, Envisat, CosmoSkyMed, Sentinel-1 (Ps, East-West and UP-Down components)
DOI: 10.17632/9mhnk7k64h
title: Repository for "The Currency Dimension of the Bank Lending Channel in International Monetary Transmission"

description: This folder contains a readme file that shows guidance for accessing the data, and a Stata do file with the code for reproducing the results.
DOI: 10.6084/m9.figshare.17705021.v1
title: Metadata record for: Analysis of metabolic dynamics during drought stress in Arabidopsis plants

description: This dataset contains key characteristics about the data described in the Data Descriptor Analysis of metabolic dynamics during drought stress in Arabidopsis plants. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.21425907.v1
title: Live transcripts

description: This dataset contains the live transcripts automatically generated on Zoom during two synchronous academic English classes in a Japanese university. Corrections were made through the "track change" function in MS word.
DOI: 10.17632/2ntwx2hzpc
title: Data for: Discovering the shared biology of cognitive traits determined by genetic overlap
DOI: 10.17632/7t2fkd6v3n
title: Differences in 30-15 IFT Test Scores Among Adult Professional Soccer Players Across Playing Positions and Categories

description: Based on data corresponding to performances of the 30-15 IFT test in professional soccer players of different competitive categories.
DOI: 10.17632/c684zy8vrn
title: JUNIOR HIGH SCHOOL ENROLMENT SY 2020-2021 ACROSS 42 DEPED SCHOOLS IN ZAMBOANGA CITY, PHILIPPINES

description: This set of data is the Junior High School Enrolment for SY 2022-2021 across the 42 DepEd Schools in Zamboanga City, Philippines. A stratified sampling was employed considering the 42 schools as strata across Gender, Grade level, Socio-Economic Status, and Age.
DOI: 10.17632/x44n47vgcg
title: Data for: Model identification for ARMA time series through convolutional neural networks

description: LUA Code for training, testing and benchmarking
DOI: 10.6084/m9.figshare.10293458.v1
title: Supplementary data Horgby et al. ERL

description: This data is supplementary to the article by Horgby et al. in Environmental Research Letters.
DOI: 10.6084/m9.figshare.1491367.v1
title: Capitalization irregularities in esDBpedia 2014 properties

description: This table proviedes a summary of the capitalization irregularities in esDBpedia 2014 properties. For each normalized (simple case) property local name, the table provides a list of variations in capitalization (with both their local names and corresponding IRIs).
DOI: 10.6084/m9.figshare.26097094.v1
title: Source Data (OTU tables) for Vigneron et al. 2024 <b>Seismic events as potential drivers of the microbial community structure and evolution in a paleo-ocean analog</b>

description: Source Data (OTU tables) for Vigneron et al. 2024 <b>Seismic events as potential drivers of the microbial community structure and evolution in a paleo-ocean analog</b>
DOI: 10.6084/m9.figshare.26771740.v1
title: DUSTED_Simulated_Data

description: Six simulated SRT patterns used in <b>DUSTED:</b><b> </b><b>Dual-attention </b><b>Enhanced </b><b>Spatial Transcriptomics Denoise</b>r
DOI: 10.15131/shef.data.12344288.v2
title: Data for 'Bumblebees Learn a Relational Rule but Switch to a Win-Stay/Lose-Switch Heuristic After Extensive Training'

description: Mapping animal performance in a behavioral task to underlying cognitive mechanisms and strategies is rarely straightforward, since a task may be solvable in more than one manner. Here, we show that bumblebees perform well on a concept-based visual discrimination task, but spontaneously switch from a concept-based solution to a simpler heuristic with extended training, all while continually increasing performance. Bumblebees were trained in an arena to find reward on displays with shapes of different sizes where they could not use low-level visual cues. One group of bees was rewarded at displays with bigger shapes and another group at displays with smaller shapes. Analysis of total choices shows bees increased their performance over 30 bouts to above chance. However, analyses of first and sequential choices suggest that after approximately 20 bouts, bumblebees changed to a win-stay/lose-switch strategy. Comparing bees’ behavior to a probabilistic model based on a win-stay/lose-switch strategy further supports the idea that bees changed strategies with extensive training. Analyses of unrewarded tests indicate bumblebees learned and retained the concept of relative size even after they had already switched to a win-stay, lost-shift strategy. We propose that the reason for this strategy switching may be due to cognitive flexibility and efficiency.
DOI: 10.17632/gcvw3jmp2y
title: CP Model for the Extended Multi-Manned Assembly Line Balancing Problem with Assignment Restrictions (MALBP-AR)

description: Paper's dataset with benchmark-based instances developed for an exploratory study of an Extended MALBP-AR problem. 
Several restrictions found in practice for transformed resources are considered here.
DOI: 10.17632/fykt94ws37
title: Reference values of Tinetti POMA among adolescents

description: The aim of this study was to evaluate the normative reference values of Tinetti POMA scale among typically developing adolescents. The Tinetti performance oriented mobility assessment scale is used to assess balance and gait of an individual and helps to predict the risk of fall. In this study 150 normally developing adolescents were recruited from the nearby schools. The age group for this study was 13-17 years old including both male and females.
DOI: 10.6084/m9.figshare.21375819.v1
title: PS-MAP Tool (MSWORD and PDF versions)

description: PS-MAP MS WORD and PDF versions
DOI: 10.6084/m9.figshare.24266155.v1
title: IMU

description: The IMU gait data set of 30 transtibial prosthesis wearers.