cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7668554
title: SVAD Age Data: Colombia

description: <strong>Description</strong> The dental and skeletal data were collected from a skeletal collection housed at the Universidad de Antioquia in Medellín, Colombia. Individuals are between birth and 22 years of age. As part of the SVAD age indicator template, there are 64 age variables (columns) in the dataset, which include diaphyseal lengths and breadths, epiphyseal fusion/appearance of ossification centers, and dental development. All data was collected from the skeletal remains, except for the <em>in situ </em>dentition, which was scored using a portable Nomad Pro 2 handheld X-ray system. The data collection methodology can be found in Stull and Corron (2022) and Corron et al. (2021). <strong>Basic Key Code:</strong> *DL_L/R == diaphyseal lengths *DB_L/R == diapyseal lengths *EF_L/R == epiphyseal fusion *Oss == ossification *man_ and max_ == mandibular and maxillary dental development <strong>References</strong> Stull, K.E. and Corron, L.K. (<em>2022</em>) The Subadult Virtual Anthropology Database (SVAD): An Accessible Repository of Contemporary Subadult Reference Data. Forensic. Sci. 2022, 2, 20–36. https://doi.org/10.3390/forensicsci2010003. Corron, LK, <em>et al. (2021)</em> Standardizing ordinal subadult age indicators: Testing for observer agreement and consistency across modalities. <em>Forensic Science International</em> 320, 110687.
description: Funded by the National Institute of Justice Award 2017-DN-BX-0144
DOI: 10.5281/zenodo.7668553
title: SVAD Age Data: Colombia

description: <strong>Description</strong> The dental and skeletal data were collected from a skeletal collection housed at the Universidad de Antioquia in Medellín, Colombia. Individuals are between birth and 22 years of age. As part of the SVAD age indicator template, there are 64 age variables (columns) in the dataset, which include diaphyseal lengths and breadths, epiphyseal fusion/appearance of ossification centers, and dental development. All data was collected from the skeletal remains, except for the <em>in situ </em>dentition, which was scored using a portable Nomad Pro 2 handheld X-ray system. The data collection methodology can be found in Stull and Corron (2022) and Corron et al. (2021). <strong>Basic Key Code:</strong> *DL_L/R == diaphyseal lengths *DB_L/R == diapyseal lengths *EF_L/R == epiphyseal fusion *Oss == ossification *man_ and max_ == mandibular and maxillary dental development <strong>References</strong> Stull, K.E. and Corron, L.K. (<em>2022</em>) The Subadult Virtual Anthropology Database (SVAD): An Accessible Repository of Contemporary Subadult Reference Data. Forensic. Sci. 2022, 2, 20–36. https://doi.org/10.3390/forensicsci2010003. Corron, LK, <em>et al. (2021)</em> Standardizing ordinal subadult age indicators: Testing for observer agreement and consistency across modalities. <em>Forensic Science International</em> 320, 110687.
description: Funded by the National Institute of Justice Award 2017-DN-BX-0144
DOI: 10.5281/zenodo.7668568
title: SVAD Age Data: France

description: <strong>Description</strong> The skeletal and dental data were collected from computed tomography images generated at the Public Hospital Services of Marseille (AP-HM). Individuals are between birth and 20 years of age. As part of the SVAD age indicator template, there are 64 age variables (columns) in the dataset, which include diaphyseal lengths and breadths, epiphyseal fusion/appearance of ossification centers, and dental development. The data collection methodology can be found in Stull and Corron (2022) and Corron et al. (2021). <strong>Basic Key Code:</strong> *DL_L/R == diaphyseal lengths *DB_L/R == diapyseal lengths *EF_L/R == epiphyseal fusion *Oss == ossification *man_ and max_ == mandibular and maxillary dental development <strong>References</strong> Stull, K.E. and Corron, L.K. (<em>2022</em>) The Subadult Virtual Anthropology Database (SVAD): An Accessible Repository of Contemporary Subadult Reference Data. Forensic. Sci. 2022, 2, 20–36. https://doi.org/10.3390/forensicsci2010003 Corron, LK, <em>et al. (2021)</em> Standardizing ordinal subadult age indicators: Testing for observer agreement and consistency across modalities. <em>Forensic Science International</em> <strong>320</strong>, 110687.
description: Funded by the National Institute of Justice Award 2017-DN-BX-0144
DOI: 10.5281/zenodo.7668567
title: SVAD Age Data: France

description: <strong>Description</strong> The skeletal and dental data were collected from computed tomography images generated at the Public Hospital Services of Marseille (AP-HM). Individuals are between birth and 20 years of age. As part of the SVAD age indicator template, there are 64 age variables (columns) in the dataset, which include diaphyseal lengths and breadths, epiphyseal fusion/appearance of ossification centers, and dental development. The data collection methodology can be found in Stull and Corron (2022) and Corron et al. (2021). <strong>Basic Key Code:</strong> *DL_L/R == diaphyseal lengths *DB_L/R == diapyseal lengths *EF_L/R == epiphyseal fusion *Oss == ossification *man_ and max_ == mandibular and maxillary dental development <strong>References</strong> Stull, K.E. and Corron, L.K. (<em>2022</em>) The Subadult Virtual Anthropology Database (SVAD): An Accessible Repository of Contemporary Subadult Reference Data. Forensic. Sci. 2022, 2, 20–36. https://doi.org/10.3390/forensicsci2010003 Corron, LK, <em>et al. (2021)</em> Standardizing ordinal subadult age indicators: Testing for observer agreement and consistency across modalities. <em>Forensic Science International</em> <strong>320</strong>, 110687.
description: Funded by the National Institute of Justice Award 2017-DN-BX-0144
DOI: 10.5281/zenodo.7019203
title: Datasets for Quantifying the impact of land use and land cover change on moisture recycling with convection-permitting WRF-tagging modeling in the agro-pastoral ecotone of northern China

description: These datasets are the processed and refined data that support and lead to the described results and allow other readers to assess the conclusions in the paper, entitled “<strong>Quantifying the impact of land use and land cover change on moisture recycling with convection-permitting WRF-tagging modeling in the agro-pastoral ecotone of northern China </strong> ”.
DOI: 10.34740/kaggle/dsv/5040882
title: Anime2023February
DOI: 10.25345/c5794143z
title: MassIVE MSV000091349 - Arabidopsis TRB proteins function in H3K4me3 demethylation by recruiting JMJ14
title: Arabidopsis telomeric repeat binding factors (TRBs) can bind telomeric DNA sequences to protect telomeres from degradation. TRBs can also recruit Polycomb Repressive Complex 2 (PRC2) to deposit tri-methylation of H3 lysine 27 (H3K27me3) over certain target loci. Here, we demonstrate that TRBs also associate and colocalize with JUMONJI14 (JMJ14) and trigger H3K4me3 demethylation at some loci. The trb1/2/3 triple mutant and the jmj14-1 mutant show an increased level of H3K4me3 over TRB and JMJ14 binding sites, resulting in up-regulation of their target genes. Furthermore, tethering TRBs to the promoter region of genes with an artificial zinc finger (TRB-ZF) successfully triggers target gene silencing, as well as H3K27me3 deposition, and H3K4me3 removal. Interestingly, JMJ14 is predominantly recruited to ZF off-target sites with low levels of H3K4me3, which is accompanied with TRB-ZFs triggered H3K4me3 removal at these loci. These results suggest that TRB proteins coordinate PRC2 and JMJ14 activities to repress target genes via H3K27me3 deposition and H3K4me3 removal.
DOI: 10.6084/m9.figshare.22106153.v2
title: LeakPair: An automated memory leak repair tool for Single Page Applications

description: Our tool LeakPair is now publicly available on npm's official site: https://www.npmjs.com/package/leakpair
DOI: 10.5517/ccdc.csd.cc2dkjj1
title: CCDC 2221383: Experimental Crystal Structure Determination

description: Related Article: Rajaghatta N. Suresh, Toreshettahally R. Swaroop, Darshini Gowda, Kempegowda Mantelingu, Kanchugarakoppal S. Rangappa|2023|RSC Advances|13|4910|doi:10.1039/D2RA08118K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dklwg
title: CCDC 2221456: Experimental Crystal Structure Determination

description: Related Article: Cassandre C. Bories, Geoffrey Gontard, Marion Barbazanges, Etienne Derat, Marc Petit|2023|Org.Lett.|25|843|doi:10.1021/acs.orglett.3c00022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dlcft
title: CCDC 2222186: Experimental Crystal Structure Determination

description: Related Article: Shuichi Nakamura, Masato Kibe, Tsunayoshi Takehara, Takeyuki Suzuki|2023|Org.Lett.|25|1040|doi:10.1021/acs.orglett.3c00259
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cn6fp
title: CCDC 2194162: Experimental Crystal Structure Determination

description: Related Article: Jin-Hua Wang, Cui-Cui Wang, Dong-Xue Liu, Jia-Hui Wang, Hui-Xin Zhao, Tian Tang, Xiao- Tong Tian, Hui Hu, Da-Shuai Zhang|2023|Inorg.Chem.Commun.|150|110492|doi:10.1016/j.inoche.2023.110492
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7668587
title: SVAD Age Data: Netherlands

description: <strong>Description</strong> The skeletal and dental data were collected from anonymized computed tomography images generated at the Amsterdam Medical Center. Individuals are between birth and 15 years of age. As part of the SVAD age indicator template, there are 64 age variables (columns) in the dataset, which include diaphyseal lengths and breadths, epiphyseal fusion/appearance of ossification centers, and dental development. The data collection methodology can be found in Stull and Corron (2022) and Corron et al. (2021). <strong>Basic Key Code:</strong> *DL_L/R == diaphyseal lengths *DB_L/R == diapyseal lengths *EF_L/R == epiphyseal fusion *Oss == ossification *man_ and max_ == mandibular and maxillary dental development <strong>References</strong> Stull, K.E. and Corron, L.K. (<em>2022</em>) The Subadult Virtual Anthropology Database (SVAD): An Accessible Repository of Contemporary Subadult Reference Data. Forensic. Sci. 2022, 2, 20–36. https://doi.org/10.3390/forensicsci2010003. Corron, LK, <em>et al. (2021)</em> Standardizing ordinal subadult age indicators: Testing for observer agreement and consistency across modalities. <em>Forensic Science International</em> 320, 110687.
description: Funded by the National Institute of Justice Award 2017-DN-BX-0144
DOI: 10.5281/zenodo.7668586
title: SVAD Age Data: Netherlands

description: <strong>Description</strong> The skeletal and dental data were collected from anonymized computed tomography images generated at the Amsterdam Medical Center. Individuals are between birth and 15 years of age. As part of the SVAD age indicator template, there are 64 age variables (columns) in the dataset, which include diaphyseal lengths and breadths, epiphyseal fusion/appearance of ossification centers, and dental development. The data collection methodology can be found in Stull and Corron (2022) and Corron et al. (2021). <strong>Basic Key Code:</strong> *DL_L/R == diaphyseal lengths *DB_L/R == diapyseal lengths *EF_L/R == epiphyseal fusion *Oss == ossification *man_ and max_ == mandibular and maxillary dental development <strong>References</strong> Stull, K.E. and Corron, L.K. (<em>2022</em>) The Subadult Virtual Anthropology Database (SVAD): An Accessible Repository of Contemporary Subadult Reference Data. Forensic. Sci. 2022, 2, 20–36. https://doi.org/10.3390/forensicsci2010003. Corron, LK, <em>et al. (2021)</em> Standardizing ordinal subadult age indicators: Testing for observer agreement and consistency across modalities. <em>Forensic Science International</em> 320, 110687.
description: Funded by the National Institute of Justice Award 2017-DN-BX-0144
DOI: 10.5281/zenodo.7668608
title: SVAD Age Data: Taiwan

description: <strong>Description</strong> The skeletal and dental data were collected from anonymized computed tomography images generated at the National Taiwan University Hospital. Individuals are between birth and 20 years of age. As part of the SVAD age indicator template, there are 64 age variables (columns) in the dataset, which include diaphyseal lengths and breadths, epiphyseal fusion/appearance of ossification centers, and dental development. The data collection methodology can be found in Stull and Corron (2022) and Corron et al. (2021). <strong>Basic Key Code:</strong> *DL_L/R == diaphyseal lengths *DB_L/R == diapyseal lengths *EF_L/R == epiphyseal fusion *Oss == ossification *man_ and max_ == mandibular and maxillary dental development <strong>References</strong> Stull, K.E. and Corron, L.K. (<em>2022</em>) The Subadult Virtual Anthropology Database (SVAD): An Accessible Repository of Contemporary Subadult Reference Data. Forensic. Sci. 2022, 2, 20–36. https://doi.org/10.3390/forensicsci2010003. Corron, LK, <em>et al. (2021)</em> Standardizing ordinal subadult age indicators: Testing for observer agreement and consistency across modalities. <em>Forensic Science International</em> 320, 110687.
description: Funded by the National Institute of Justice Award 2017-DN-BX-0144
DOI: 10.5281/zenodo.7668607
title: SVAD Age Data: Taiwan

description: <strong>Description</strong> The skeletal and dental data were collected from anonymized computed tomography images generated at the National Taiwan University Hospital. Individuals are between birth and 20 years of age. As part of the SVAD age indicator template, there are 64 age variables (columns) in the dataset, which include diaphyseal lengths and breadths, epiphyseal fusion/appearance of ossification centers, and dental development. The data collection methodology can be found in Stull and Corron (2022) and Corron et al. (2021). <strong>Basic Key Code:</strong> *DL_L/R == diaphyseal lengths *DB_L/R == diapyseal lengths *EF_L/R == epiphyseal fusion *Oss == ossification *man_ and max_ == mandibular and maxillary dental development <strong>References</strong> Stull, K.E. and Corron, L.K. (<em>2022</em>) The Subadult Virtual Anthropology Database (SVAD): An Accessible Repository of Contemporary Subadult Reference Data. Forensic. Sci. 2022, 2, 20–36. https://doi.org/10.3390/forensicsci2010003. Corron, LK, <em>et al. (2021)</em> Standardizing ordinal subadult age indicators: Testing for observer agreement and consistency across modalities. <em>Forensic Science International</em> 320, 110687.
description: Funded by the National Institute of Justice Award 2017-DN-BX-0144
DOI: 10.6084/m9.figshare.22106153.v3
title: LeakPair: An automated memory leak repair tool for Single Page Applications

description: LeakPair: An automated memory leak repair tool for Single Page Applications
DOI: 10.6084/m9.figshare.22106153.v4
title: LeakPair: An automated memory leak repair tool for Single Page Applications

description: LeakPair: An automated memory leak repair tool for Single Page Applications
DOI: 10.6084/m9.figshare.22144976
title: Test data

description: The scRNA-seq data（including gene expression matrix and cell annotation）
DOI: 10.21227/1vw8-ap69
title: B-NER

description: Within the Natural Language Processing (NLP) framework, Named Entity Recognition (NER) is regarded as the basis for extracting key information to understand texts in any language. As Bangla is a highly inflectional, morphologically rich, and resource-scarce language, building a balanced NER corpus with large and diverse entities is a demanding task. However, previously developed Bangla NER systems are limited to recognizing only three familiar entities: person, location, and organization. To address this significant limitation, we introduce a novel Bangla NER dataset B-NER, which was created using 22,144 manually annotated Bangla sentences collected from Bangla newspapers and Bangla Wikipedia. This dataset includes a total of 9,895 unique words which were manually categorized into eight different entity types, such as a person, organization, event, artifact, time indicator, natural phenomenon, geopolitical entity, and geographical location. Inter-annotator agreement experiments were conducted to validate the quality of annotations performed by three annotators, resulting in a Kappa score of 0.82. In this paper, we provide an outline of the annotation guideline illustrated with examples, discuss the B-NER dataset properties, and present benchmark evaluations of the dataset. In order to demonstrate the superiority and balance of the B-NER dataset compared to other publicly available datasets, we conducted a cross-dataset analysis. This analysis involved training the model on the B-NER dataset and testing it on publicly accessible datasets. The results showed that the model trained on B-NER performed optimally. Furthermore, we performed exhaustive benchmark evaluations based on Bidirectional LSTM with fastText embeddings and sentence transformer models. Among these models, fine-tuned IndicBERT achieved noticeable results with a macro accuracy of 86%. This dataset and baseline results will be publicly available under a CC-BY 4.0 license in the CoNLL-2002 format to facilitate further research on Bangla NER.
DOI: 10.26036/cnp0002381
title: Alstonia scholaris

description: The genome, transcriptome and other omics analysis of Alstomia scholaris, a common and anti-cancer plant from Apocynaceae
DOI: 10.26036/cnp0003889
title: Metagenomic insights into the composition and function of gut microbiota of mice infected with Toxoplasma gondii

description: In spite of oral infection with Toxoplasma gondii (T. gondii) results in dysbiosis and enteritis, the functions of gut microbiome in toxoplasmosis has not been explored. Here, we used shotgun metagenomics to characterize the composition and function of mouse microbial community during T. gondii acute infection and chronic infection, respectively.
DOI: 10.6084/m9.figshare.22145966
title: kpnc_metadata

description: Metadata of KPNC samples included in analysis in manuscript entitled: Evidence supports causal association between allele-specific vitamin D receptor binding and multiple sclerosis among Europeans. <br> Complete KPNC data can be accessed by contacting Lisa Barcellos (lbarcellos@berkeley.edu) and Lynn Hollyer (lhollyer@berkeley.edu). Requests will be reviewed by the IRB and data can be shared upon approval.
DOI: 10.6084/m9.figshare.22145966.v1
title: kpnc_metadata

description: Metadata of KPNC samples included in analysis in manuscript entitled: Evidence supports causal association between allele-specific vitamin D receptor binding and multiple sclerosis among Europeans. <br> Complete KPNC data can be accessed by contacting Lisa Barcellos (lbarcellos@berkeley.edu) and Lynn Hollyer (lhollyer@berkeley.edu). Requests will be reviewed by the IRB and data can be shared upon approval.
DOI: 10.6084/m9.figshare.22145054
title: Landslide precursor recognition from an understanding of soil landslide evolution

description: The some data used in this study were obtained through the large-scale field experiments and have been shown in the figures, tables and supporting information.
DOI: 10.6084/m9.figshare.22145054.v1
title: Landslide precursor recognition from an understanding of soil landslide evolution

description: The some data used in this study were obtained through the large-scale field experiments and have been shown in the figures, tables and supporting information.
DOI: 10.5517/ccdc.csd.cc2c9977
title: CCDC 2183678: Experimental Crystal Structure Determination

description: Related Article: Ryo Sumitani, Daisuke Kuwahara, Tomoyuki Mochida|2023|Inorg.Chem.|62|2169|doi:10.1021/acs.inorgchem.2c03865
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.22132040.v1
title: PRISMA checklist

description: PRISMA_ScR checklist
DOI: 10.6084/m9.figshare.22132040
title: PRISMA Flowchart and checklist

description: PRISMA flowchart and ScR checklist
DOI: 10.6084/m9.figshare.22132040.v3
title: PRISMA Flowchart and checklist

description: PRISMA flowchart and ScR checklist
DOI: 10.6084/m9.figshare.22132040.v2
title: PRISMA checklist

description: PRISMA flowchart and ScR checklist
DOI: 10.6084/m9.figshare.22146212
title: Suicide and self data for repository.xlsx

description: The dataset for manuscript on Suicide and self harm in Pakistan
DOI: 10.6084/m9.figshare.21408090.v4
title: Positive selection genes identified in Theocolax elegans

description: Identified positive selection genes in Theocolax elegans by paml
DOI: 10.6084/m9.figshare.21408090
title: Positively selected genes identified in Theocolax elegans

description: Identified positive selection genes in Theocolax elegans by paml
DOI: 10.6084/m9.figshare.21408090.v6
title: Positively selected genes identified in Theocolax elegans

description: Identified positive selection genes in Theocolax elegans by paml
DOI: 10.6084/m9.figshare.21408090.v5
title: Positively selected genes identified in Theocolax elegans

description: Identified positive selection genes in Theocolax elegans by paml
DOI: 10.6084/m9.figshare.14596065
title: Morphological data for ants in Guadarrama Range (central Spain)

description: Source Silvestre, M., Carmona, C.P., Azcárate, F.M. and Seoane, J. (2021), Diverging facets of grassland ant diversity along a Mediterranean elevational gradient. Ecol Entomol, 46: 1301-1314. https://doi.org/10.1111/een.13077 <br> Measurements We measured head width, eye width, scape length and tibia length of hind leg (in mm) for three randomly selected individuals of each species present in each sampling plot. Six rare species, accounting for a marginal proportion in the assemblages, had fewer individuals <br> Sampling design: There were n = 54 sampling plots (approximately 20 m x 15 m) with 12 pitfall traps each. Pitfalls were deployed in a grid of 3 x 4 traps distanced by 5 m for seven consecutive days. Traps were small plastic tubes (2.5 cm diameter x 5 cm depth) buried at ground level and contained 70% ethanol and 30% ethylene glycol solution as preservative. We sampled along an elevational gradient: six elevation belts replicated three times, approximately at 650 m, 1000 m, 1300 m, 1700 m, 2000 m, 2250 m in a total of 18 sites. Each site had three sampling plots (that is, three grids of pitfall traps) separated by 50 m. Thus, we have 3 plots x 6 sites x 3 replicates (elevation belts). The sampling was conducted in the southern slopes of the Sierra de Guadarrama Range (central Spain), on Mediterranean dry grasslands in summer, the period of higher ant activity (July 2016). <br>