cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30474164
title: Additional file 19 of Phylogeny of the plant receptor-like kinase (RLK) gene family and expression analysis of wheat RLK genes in response to biotic and abiotic stresses

description: Additional file 19: Table S6. Chromosome locations of T. aestivum tandem duplication RLKs.
DOI: 10.6084/m9.figshare.30474164.v1
title: Additional file 19 of Phylogeny of the plant receptor-like kinase (RLK) gene family and expression analysis of wheat RLK genes in response to biotic and abiotic stresses

description: Additional file 19: Table S6. Chromosome locations of T. aestivum tandem duplication RLKs.
DOI: 10.6084/m9.figshare.30474167
title: Additional file 20 of Phylogeny of the plant receptor-like kinase (RLK) gene family and expression analysis of wheat RLK genes in response to biotic and abiotic stresses

description: Additional file 20: Table S7. Collinearity events and Ka/Ks values of RLKs among T. aestivum, B. distachyon and O. sativa. Sheets 1-2 show the Ka/Ks values of collinearity events from RLKs and all genes between T. aestivum and B. distachyon. Similarly, sheets 3-4 showed T. aestivum and O. sativa.
DOI: 10.6084/m9.figshare.30474167.v1
title: Additional file 20 of Phylogeny of the plant receptor-like kinase (RLK) gene family and expression analysis of wheat RLK genes in response to biotic and abiotic stresses

description: Additional file 20: Table S7. Collinearity events and Ka/Ks values of RLKs among T. aestivum, B. distachyon and O. sativa. Sheets 1-2 show the Ka/Ks values of collinearity events from RLKs and all genes between T. aestivum and B. distachyon. Similarly, sheets 3-4 showed T. aestivum and O. sativa.
DOI: 10.6084/m9.figshare.30474170
title: Additional file 21 of Phylogeny of the plant receptor-like kinase (RLK) gene family and expression analysis of wheat RLK genes in response to biotic and abiotic stresses

description: Additional file 21: Table S8. Public wheat, Ae. tauschii and B. distachyon RNA-seq expression data for use.
DOI: 10.6084/m9.figshare.30474170.v1
title: Additional file 21 of Phylogeny of the plant receptor-like kinase (RLK) gene family and expression analysis of wheat RLK genes in response to biotic and abiotic stresses

description: Additional file 21: Table S8. Public wheat, Ae. tauschii and B. distachyon RNA-seq expression data for use.
DOI: 10.6084/m9.figshare.30474173
title: Additional file 22 of Phylogeny of the plant receptor-like kinase (RLK) gene family and expression analysis of wheat RLK genes in response to biotic and abiotic stresses

description: Additional file 22: Table S9. The expression of T. aestivum RLK genes under drought stress treatment. Sheet 1 was about the wheat (Triticum aestivum L.) cultivars "TAM 111" and "TAM 112" (US). Sheet 2 was about "Svevo" and "IL20-2". Sheet 3 was about “L-82” and “Marvdasht”.
DOI: 10.6084/m9.figshare.30474173.v1
title: Additional file 22 of Phylogeny of the plant receptor-like kinase (RLK) gene family and expression analysis of wheat RLK genes in response to biotic and abiotic stresses

description: Additional file 22: Table S9. The expression of T. aestivum RLK genes under drought stress treatment. Sheet 1 was about the wheat (Triticum aestivum L.) cultivars "TAM 111" and "TAM 112" (US). Sheet 2 was about "Svevo" and "IL20-2". Sheet 3 was about “L-82” and “Marvdasht”.
DOI: 10.6084/m9.figshare.30474176
title: Additional file 23 of Phylogeny of the plant receptor-like kinase (RLK) gene family and expression analysis of wheat RLK genes in response to biotic and abiotic stresses

description: Additional file 23: Table S10. The expression of Ae. tauschii and B. distachyon RLK genes under drought stress treatment. Sheet 1 was about Ae. tauschii. Sheet 2 was about B. distachyon.
DOI: 10.6084/m9.figshare.30474176.v1
title: Additional file 23 of Phylogeny of the plant receptor-like kinase (RLK) gene family and expression analysis of wheat RLK genes in response to biotic and abiotic stresses

description: Additional file 23: Table S10. The expression of Ae. tauschii and B. distachyon RLK genes under drought stress treatment. Sheet 1 was about Ae. tauschii. Sheet 2 was about B. distachyon.
DOI: 10.6084/m9.figshare.30474179
title: Additional file 24 of Phylogeny of the plant receptor-like kinase (RLK) gene family and expression analysis of wheat RLK genes in response to biotic and abiotic stresses

description: Additional file 24: Table S11. Normalized gene expression log2-fold fold change (treatment vs. control) values of T. aestivum RLK genes from transcriptomes under abiotic stress treatments. Sheet 1 was about heat stress. Sheet 2 was about salinity stress. Sheet 3 was about waterlogging stress.
DOI: 10.6084/m9.figshare.30474179.v1
title: Additional file 24 of Phylogeny of the plant receptor-like kinase (RLK) gene family and expression analysis of wheat RLK genes in response to biotic and abiotic stresses

description: Additional file 24: Table S11. Normalized gene expression log2-fold fold change (treatment vs. control) values of T. aestivum RLK genes from transcriptomes under abiotic stress treatments. Sheet 1 was about heat stress. Sheet 2 was about salinity stress. Sheet 3 was about waterlogging stress.
DOI: 10.6084/m9.figshare.30474182
title: Additional file 25 of Phylogeny of the plant receptor-like kinase (RLK) gene family and expression analysis of wheat RLK genes in response to biotic and abiotic stresses

description: Additional file 25: Table S12. Normalized gene expression log2-fold fold change (treatment vs. control) values of T. aestivum RLK genes from transcriptomes under biotic stress treatments. Sheet 1 was about F. graminearum treatment. Sheet 2 was about stripe rust. Sheet 3 was about Funneliformis and Xanthomonas treatment. Sheet 4 was about Xanthomonas treatment.
DOI: 10.6084/m9.figshare.30474182.v1
title: Additional file 25 of Phylogeny of the plant receptor-like kinase (RLK) gene family and expression analysis of wheat RLK genes in response to biotic and abiotic stresses

description: Additional file 25: Table S12. Normalized gene expression log2-fold fold change (treatment vs. control) values of T. aestivum RLK genes from transcriptomes under biotic stress treatments. Sheet 1 was about F. graminearum treatment. Sheet 2 was about stripe rust. Sheet 3 was about Funneliformis and Xanthomonas treatment. Sheet 4 was about Xanthomonas treatment.
DOI: 10.6084/m9.figshare.30474185
title: Additional file 26 of Phylogeny of the plant receptor-like kinase (RLK) gene family and expression analysis of wheat RLK genes in response to biotic and abiotic stresses

description: Additional file 26: Table S13. Primers used in the qRT‒PCR analysis.
DOI: 10.6084/m9.figshare.30474185.v1
title: Additional file 26 of Phylogeny of the plant receptor-like kinase (RLK) gene family and expression analysis of wheat RLK genes in response to biotic and abiotic stresses

description: Additional file 26: Table S13. Primers used in the qRT‒PCR analysis.
DOI: 10.6084/m9.figshare.23167853
title: Additional file 1 of Dual titration of minute ventilation and sweep gas flow to control carbon dioxide variations in patients on venovenous extracorporeal membrane oxygenation

description: Additional file 1: Table S1. Mondor dual protocol for adaptation of oxygenator sweep gas flow on the ECMO machine and minute ventilation on the mechanical ventilator after ECMO implantation. Table S2. Example of dual titration of mechanical ventilator minute ventilation and oxygenator sweep gas flow in a patient supported by venovenous extracorporeal membrane oxygenation. Table S3. Description of patients with cerebral bleeding.
DOI: 10.6084/m9.figshare.23167853.v2
title: Additional file 1 of Dual titration of minute ventilation and sweep gas flow to control carbon dioxide variations in patients on venovenous extracorporeal membrane oxygenation

description: Additional file 1: Table S1. Mondor dual protocol for adaptation of oxygenator sweep gas flow on the ECMO machine and minute ventilation on the mechanical ventilator after ECMO implantation. Table S2. Example of dual titration of mechanical ventilator minute ventilation and oxygenator sweep gas flow in a patient supported by venovenous extracorporeal membrane oxygenation. Table S3. Description of patients with cerebral bleeding.
DOI: 10.6084/m9.figshare.30474200
title: Additional file of Dual titration of minute ventilation and sweep gas flow to control carbon dioxide variations in patients on venovenous extracorporeal membrane oxygenation

description: Additional file of Dual titration of minute ventilation and sweep gas flow to control carbon dioxide variations in patients on venovenous extracorporeal membrane oxygenation
DOI: 10.6084/m9.figshare.30474200.v1
title: Additional file of Dual titration of minute ventilation and sweep gas flow to control carbon dioxide variations in patients on venovenous extracorporeal membrane oxygenation

description: Additional file of Dual titration of minute ventilation and sweep gas flow to control carbon dioxide variations in patients on venovenous extracorporeal membrane oxygenation
DOI: 10.6084/m9.figshare.23167853.v1
title: Additional file 1 of Dual titration of minute ventilation and sweep gas flow to control carbon dioxide variations in patients on venovenous extracorporeal membrane oxygenation

description: Additional file 1: Table S1. Mondor dual protocol for adaptation of oxygenator sweep gas flow on the ECMO machine and minute ventilation on the mechanical ventilator after ECMO implantation. Table S2. Example of dual titration of mechanical ventilator minute ventilation and oxygenator sweep gas flow in a patient supported by venovenous extracorporeal membrane oxygenation. Table S3. Description of patients with cerebral bleeding.
DOI: 10.6084/m9.figshare.23239966
title: Additional file 1 of Evolution and biogeography of apple stem grooving virus

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.23239966.v2
title: Additional file 1 of Evolution and biogeography of apple stem grooving virus

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.23258820
title: Additional file 1 of Scleral appearance is not a correlate of domestication in mammals

description: Additional file 1: Supplementary Table 1.
DOI: 10.6084/m9.figshare.30474215
title: Additional file of Scleral appearance is not a correlate of domestication in mammals

description: Additional file of Scleral appearance is not a correlate of domestication in mammals
DOI: 10.6084/m9.figshare.30474215.v1
title: Additional file of Scleral appearance is not a correlate of domestication in mammals

description: Additional file of Scleral appearance is not a correlate of domestication in mammals
DOI: 10.6084/m9.figshare.23258820.v1
title: Additional file 1 of Scleral appearance is not a correlate of domestication in mammals

description: Additional file 1: Supplementary Table 1.
DOI: 10.6084/m9.figshare.23258820.v2
title: Additional file 1 of Scleral appearance is not a correlate of domestication in mammals

description: Additional file 1: Supplementary Table 1.
DOI: 10.6084/m9.figshare.23590533
title: Additional file 1 of Global analysis of the biosynthetic chemical space of marine prokaryotes

description: Additional file 1: Figure S1. Flowchart for the collection of marine prokaryotic genomes. Figure S2. (A) BGC counts, (B) ratio of BGCs on edge, and (C) number of genomes in genomes with varying degrees of completeness. Figure S3. Bar chart depicting the composition of GCFs within genomes of different categories, (A) all taxa, (B) bacteria, (C) archaea, (D) cultured genome, (E) MAG, and (F) SAG. Figure S4. A selected (A) RiPPs and (B) NRPS gene cluster family (GCF) and the comparison of the BGCs in the corresponding GCF. Figure S5. The predicted core peptides of BGCs in selected RiPPs GCFs. The peptide sequences from each GCF were aligned using Muscle [2] and then visualized in TBtools [3]. Figure S6. Gene cluster family network of the 25 predicted BGCs from Aquimarina muelleri DSM 19832 T. A. muelleri DSM 19832 T possesses 20 orphan BGCs and five genus-specific BGCs (only showing a high similarity to BGCs from Aquimarina strains). Figure S7. Comparison of the experimental mass spectrum of N-acetyltryptamine with its spectrum from the GNPS database. Figure S8. Genomic distribution of secondary metabolite biosynthetic genes clusters in A. muelleri DSM 19832 T. The biosynthetic gene clusters are shown in the outer layer. Table S1. Genomic features and the anti-SMASH results of the 33,904 marine prokaryotes-derived genomes. Table S2. Information about the 70,011 BGCs. Table S3. Information about the reported microbial natural products. Table S4. Information about the 24,536 GCFs. Table S5. Information about the RiPPs BGCs. Table S6. Information about the core peptides encoded by RiPPs BGCs. Table S7. Metabolite annotation in metabolomic data of A. muelleri DSM 19832 T.
DOI: 10.6084/m9.figshare.23590533.v2
title: Additional file 1 of Global analysis of the biosynthetic chemical space of marine prokaryotes

description: Additional file 1: Figure S1. Flowchart for the collection of marine prokaryotic genomes. Figure S2. (A) BGC counts, (B) ratio of BGCs on edge, and (C) number of genomes in genomes with varying degrees of completeness. Figure S3. Bar chart depicting the composition of GCFs within genomes of different categories, (A) all taxa, (B) bacteria, (C) archaea, (D) cultured genome, (E) MAG, and (F) SAG. Figure S4. A selected (A) RiPPs and (B) NRPS gene cluster family (GCF) and the comparison of the BGCs in the corresponding GCF. Figure S5. The predicted core peptides of BGCs in selected RiPPs GCFs. The peptide sequences from each GCF were aligned using Muscle [2] and then visualized in TBtools [3]. Figure S6. Gene cluster family network of the 25 predicted BGCs from Aquimarina muelleri DSM 19832 T. A. muelleri DSM 19832 T possesses 20 orphan BGCs and five genus-specific BGCs (only showing a high similarity to BGCs from Aquimarina strains). Figure S7. Comparison of the experimental mass spectrum of N-acetyltryptamine with its spectrum from the GNPS database. Figure S8. Genomic distribution of secondary metabolite biosynthetic genes clusters in A. muelleri DSM 19832 T. The biosynthetic gene clusters are shown in the outer layer. Table S1. Genomic features and the anti-SMASH results of the 33,904 marine prokaryotes-derived genomes. Table S2. Information about the 70,011 BGCs. Table S3. Information about the reported microbial natural products. Table S4. Information about the 24,536 GCFs. Table S5. Information about the RiPPs BGCs. Table S6. Information about the core peptides encoded by RiPPs BGCs. Table S7. Metabolite annotation in metabolomic data of A. muelleri DSM 19832 T.
DOI: 10.15468/dl.jakaw9
title: Occurrence Download

description: A dataset containing 41704 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is Danaus plexippus",
 "HasCoordinate is TRUE",
 "Year is 2021"
 ]
}

 The dataset includes 41704 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005966-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30474287
title: Additional file of Efficacy of integrating a semi-immersive virtual device in the HABIT-ILE intervention for children with unilateral cerebral palsy: a non-inferiority randomized controlled trial

description: Additional file of Efficacy of integrating a semi-immersive virtual device in the HABIT-ILE intervention for children with unilateral cerebral palsy: a non-inferiority randomized controlled trial
DOI: 10.6084/m9.figshare.30474287.v2
title: Additional file of Efficacy of integrating a semi-immersive virtual device in the HABIT-ILE intervention for children with unilateral cerebral palsy: a non-inferiority randomized controlled trial

description: Additional file of Efficacy of integrating a semi-immersive virtual device in the HABIT-ILE intervention for children with unilateral cerebral palsy: a non-inferiority randomized controlled trial
DOI: 10.6084/m9.figshare.30474311
title: Additional file of Extracellular vesicles of the probiotic bacteria E. coli O83 activate innate immunity and prevent allergy in mice

description: Additional file of Extracellular vesicles of the probiotic bacteria E. coli O83 activate innate immunity and prevent allergy in mice
DOI: 10.6084/m9.figshare.30474311.v1
title: Additional file of Extracellular vesicles of the probiotic bacteria E. coli O83 activate innate immunity and prevent allergy in mice

description: Additional file of Extracellular vesicles of the probiotic bacteria E. coli O83 activate innate immunity and prevent allergy in mice
DOI: 10.15468/dl.2huu2u
title: Occurrence Download

description: A dataset containing 102982 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-74.23426 40.53603,-74.14666 40.53603,-74.14666 40.60766,-74.23426 40.60766,-74.23426 40.53603))",
 "OccurrenceStatus is Present",
 "Year 1990-2025"
 ]
}

 The dataset includes 102982 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005952-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30474317
title: Additional file 1 of Comprehensive analysis of alternative splicing across multiple transcriptomic cohorts reveals prognostic signatures in prostate cancer

description: Additional file 1: Table S1. Differential alternative splicing events from EventPointer analysis in the Clariom D dataset.
DOI: 10.6084/m9.figshare.30474317.v1
title: Additional file 1 of Comprehensive analysis of alternative splicing across multiple transcriptomic cohorts reveals prognostic signatures in prostate cancer

description: Additional file 1: Table S1. Differential alternative splicing events from EventPointer analysis in the Clariom D dataset.
DOI: 10.6084/m9.figshare.30474320
title: Additional file 2 of Comprehensive analysis of alternative splicing across multiple transcriptomic cohorts reveals prognostic signatures in prostate cancer

description: Additional file 2:Table S2. CancerMine results.
DOI: 10.6084/m9.figshare.30474320.v1
title: Additional file 2 of Comprehensive analysis of alternative splicing across multiple transcriptomic cohorts reveals prognostic signatures in prostate cancer

description: Additional file 2:Table S2. CancerMine results.
DOI: 10.6084/m9.figshare.30474323
title: Additional file 3 of Comprehensive analysis of alternative splicing across multiple transcriptomic cohorts reveals prognostic signatures in prostate cancer

description: Additional file 3: Table S3. Differentially expressed alternative splicing events identified in the TCGA-PRAD dataset. TCGA: The Cancer Genome Atlas; PRAD: prostate adenocarcinoma; ID: event identifier; logFC: log2 transformed fold change; AveExpr: average expression (log2-transformed) for the event over all samples; t: moderated t-statistic; P.Value: raw p-value; adj.P.Val:adjusted p-value using Benjamini-Hochberg (BH) approach; B: log-odds; gene: parent gene symbol of the event; asType: event type; ID2: alternative identifier; AA: alternate acceptor sites; AD: alternate donor sites; AP: alternate promoter; AT: alternate terminator; ES: exon skip; ME: mutually exclusive exons; RI: retained intron.
DOI: 10.6084/m9.figshare.30474323.v1
title: Additional file 3 of Comprehensive analysis of alternative splicing across multiple transcriptomic cohorts reveals prognostic signatures in prostate cancer

description: Additional file 3: Table S3. Differentially expressed alternative splicing events identified in the TCGA-PRAD dataset. TCGA: The Cancer Genome Atlas; PRAD: prostate adenocarcinoma; ID: event identifier; logFC: log2 transformed fold change; AveExpr: average expression (log2-transformed) for the event over all samples; t: moderated t-statistic; P.Value: raw p-value; adj.P.Val:adjusted p-value using Benjamini-Hochberg (BH) approach; B: log-odds; gene: parent gene symbol of the event; asType: event type; ID2: alternative identifier; AA: alternate acceptor sites; AD: alternate donor sites; AP: alternate promoter; AT: alternate terminator; ES: exon skip; ME: mutually exclusive exons; RI: retained intron.
DOI: 10.6084/m9.figshare.30474326
title: Additional file 4 of Comprehensive analysis of alternative splicing across multiple transcriptomic cohorts reveals prognostic signatures in prostate cancer

description: Additional file 4: Table S4. rMATS results for PRJEB2449 cohort. (a) A summary of the total number of events, significant annotated splicing events, and their associated parent genes as identified using rMATS in the PRJEB2449 dataset. rMATS: Replicate Multivariate Analysis of Transcript Splicing. (b) rMATS output for significant alternative 3′ splice site (A3SS) events. rMATS: Replicate Multivariate Analysis of Transcript Splicing. (c) rMATS output for significant alternative 5′ splice site (A5SS) events. rMATS: Replicate Multivariate Analysis of Transcript Splicing. (d) rMATS output for significant mutually exclusive exons (MXE) events. rMATS: Replicate Multivariate Analysis of Transcript Splicing. (e) rMATS output for significant retained intron (RI) events. rMATS: Replicate Multivariate Analysis of Transcript Splicing. (f) rMATS output for significant skipped exon (SE) events. rMATS: Replicate Multivariate Analysis of Transcript Splicing.
DOI: 10.6084/m9.figshare.30474326.v1
title: Additional file 4 of Comprehensive analysis of alternative splicing across multiple transcriptomic cohorts reveals prognostic signatures in prostate cancer

description: Additional file 4: Table S4. rMATS results for PRJEB2449 cohort. (a) A summary of the total number of events, significant annotated splicing events, and their associated parent genes as identified using rMATS in the PRJEB2449 dataset. rMATS: Replicate Multivariate Analysis of Transcript Splicing. (b) rMATS output for significant alternative 3′ splice site (A3SS) events. rMATS: Replicate Multivariate Analysis of Transcript Splicing. (c) rMATS output for significant alternative 5′ splice site (A5SS) events. rMATS: Replicate Multivariate Analysis of Transcript Splicing. (d) rMATS output for significant mutually exclusive exons (MXE) events. rMATS: Replicate Multivariate Analysis of Transcript Splicing. (e) rMATS output for significant retained intron (RI) events. rMATS: Replicate Multivariate Analysis of Transcript Splicing. (f) rMATS output for significant skipped exon (SE) events. rMATS: Replicate Multivariate Analysis of Transcript Splicing.
DOI: 10.6084/m9.figshare.30474329
title: Additional file 5 of Comprehensive analysis of alternative splicing across multiple transcriptomic cohorts reveals prognostic signatures in prostate cancer

description: Additional file 5: Table S5. Overlapping events among the cohorts.(a) Overlapping differentially expressed alternative spicing events between the Clariom D and TCGA-PRAD datasets. TCGA: The Cancer Genome Atlas; PRAD: prostate adenocarcinoma. (b) Overlapping differentially expressed alternative spicing events between the Clariom D and PRJEB2449 datasets. (c) Overlapping differentially expressed alternative spicing events across the Clariom D, TCGA-PRAD and PRJEB2449 datasets. TCGA: The Cancer Genome Atlas; PRAD: prostate adenocarcinoma. (d) Overlapping differentially expressed alternative spicing events observed between the TCGA-PRAD and PRJEB2449 datasets. TCGA: The Cancer Genome Atlas; PRAD: prostate adenocarcinoma.