cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/n7h-zcc-g8w
title: Clarkia amoena (Lehm.) A. Nelson & J. F. Macbr.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/dzp-ctm-0z9
title: Sterculia pruriens (Aubl.) K. Schum.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/rkb-e1n-fzh
title: Silene baccifera (L.) Durande

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/wqh-01m-z2f
title: Pseudostellaria europaea Schaeftl.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/zn7-rk1-l7h
title: Geranium versicolor L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/0d9-fw6-xy9
title: Pleioblastus argenteostriatus (Regel) Nakai

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/6ty-mmb-93v
title: Anthoxanthum odoratum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/v1s-wtz-ddn
title: Malva sylvestris L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.6084/m9.figshare.29656754
title: Dataset supporting the manuscript “Desiccation of the Red Sea basin at the start of the Messinian salinity crisis was followed by major erosion and reflooding from the Indian Ocean” (submitted to Communications Earth & Environment).

description: Dataset supporting the paper “Desiccation of the Red Sea basin at the start of the Messinian salinity crisis was followed by major erosion and reflooding from the Indian Ocean” (submitted to Communications Earth & Environment). It contains ⁸⁷Sr/⁸⁶Sr results and derived ages for Wells A and B, image files used in Figures 2–5, and ArcGIS shapefiles used to build map figures.Contents:<b>Table 1_Sr data.xlsx</b>: Sr isotope data used in Table 1 and Figure 1 of the paper. (Ages calculated from measured ⁸⁷Sr/⁸⁶Sr using linear regression to the McArthur & Howarth GTS2020 seawater curve.)<b>Figure 2c</b>: Core and macro images used for Figure 2 of the paper.<b>Figure 3</b>: Thin‑section images used for Figure 3 of the paper. Scale bar = 0.5 mm in each image.<b>Figure 4:</b> Well B and outcrop images used for Figure 4 of the paper.<b>Figure 5:</b> Seismic sections used for Figure 5 of the paper. Display: zero‑phase reverse polarity; vertical exaggeration = 4×.<br><b>ArcGIS Shapefiles</b> (map layers) used for the maps:mid ocean ridge axis (polyline)Oceanic Crust (polygon)Subsurface extent of Masiyah salt (polygon)Volcanic Vents (points)
DOI: 10.6084/m9.figshare.29656754.v1
title: Dataset supporting the manuscript “Desiccation of the Red Sea basin at the start of the Messinian salinity crisis was followed by major erosion and reflooding from the Indian Ocean” (submitted to Communications Earth & Environment).

description: Dataset supporting the paper “Desiccation of the Red Sea basin at the start of the Messinian salinity crisis was followed by major erosion and reflooding from the Indian Ocean” (submitted to Communications Earth & Environment). It contains ⁸⁷Sr/⁸⁶Sr results and derived ages for Wells A and B, image files used in Figures 2–5, and ArcGIS shapefiles used to build map figures.Contents:<b>Table 1_Sr data.xlsx</b>: Sr isotope data used in Table 1 and Figure 1 of the paper. (Ages calculated from measured ⁸⁷Sr/⁸⁶Sr using linear regression to the McArthur & Howarth GTS2020 seawater curve.)<b>Figure 2c</b>: Core and macro images used for Figure 2 of the paper.<b>Figure 3</b>: Thin‑section images used for Figure 3 of the paper. Scale bar = 0.5 mm in each image.<b>Figure 4:</b> Well B and outcrop images used for Figure 4 of the paper.<b>Figure 5:</b> Seismic sections used for Figure 5 of the paper. Display: zero‑phase reverse polarity; vertical exaggeration = 4×.<br><b>ArcGIS Shapefiles</b> (map layers) used for the maps:mid ocean ridge axis (polyline)Oceanic Crust (polygon)Subsurface extent of Masiyah salt (polygon)Volcanic Vents (points)
DOI: 10.3535/pkr-lpt-12e
title: Hieracium L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/zsd-rmj-3gy
title: Tephroseris tenuifolia (Gaudin) Holub

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.17632/p98c346vvd
title: Raw Data of Engineering the carbohydrate-binding module to improve cellulolytic enzyme activity of Cel7A from Trichoderma reesei

description: Liquid phase diagram of hydrolysis data
DOI: 10.3535/lae-x1n-kyw
title: Stuckenia pectinata (L.) Börner

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/pgz-nlb-zwx
title: Connarus coriaceus G. Schellenb.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/3rl-h5k-rsz
title: Viola arvensis subsp. megalantha Nauenb.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/k2t-db3-81a
title: Viola arvensis subsp. megalantha Nauenb.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.17632/p98c346vvd.1
title: Raw Data of Engineering the carbohydrate-binding module to improve cellulolytic enzyme activity of Cel7A from Trichoderma reesei

description: Liquid phase diagram of hydrolysis data
DOI: 10.3535/pdz-rl4-1rf
title: Chenopodium × borbasii Murr

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/bfs-8p2-kdf
title: Geranium phaeum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/qp0-nrw-tkh
title: Chenopodium opulifolium Schrad. ex W. D. J. Koch & Ziz

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/0fx-cht-b50
title: Agropyron Gaertn.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/z1e-jw7-0kk
title: Agropyron Gaertn.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/hpz-114-ebv
title: Chenopodium × borbasii Murr

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/p42-e0a-x0w
title: Hieracium L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/haz-7tq-dc8
title: Agropyron cristatum (L.) Gaertn.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/n3z-0wq-8r0
title: Cymbalaria microcalyx (Boiss.) Wettst.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/m2s-rlz-p30
title: Metalasia humilis P. O. Karis

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ylx-9q4-970
title: Salicornia quinqueflora subsp. quinqueflora

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.rdgusn
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oreochromis niloticus",
 "Country is Ecuador",
 "HasCoordinate is true"
 ]
}

 The dataset includes 22 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062032-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/39w-jmw-2fw
title: Colobanthus affinis (Hook.) Hook. fil.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/epn-418-f03
title: Athanasia humilis Källersjö

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.37v9t6
title: Occurrence Download

description: A dataset containing 926 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Berberis thunbergii",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 926 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062031-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/s17-n2c-1qh
title: Pleioblastus argenteostriatus (Regel) Nakai

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/xnx-x4r-zw0
title: Euphrasia hirtella Jord. ex Reut.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.wz6msx
title: Occurrence Download

description: A dataset containing 986477 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Lanius collurio)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 986477 records from 2398 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061990-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sxmvsn
title: Occurrence Download

description: A dataset containing 4026 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is COL.29.23_2",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 4026 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015963-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e9uh2r
title: Occurrence Download

description: A dataset containing 33781 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acacia mearnsii De Wild."
 ]
}

 The dataset includes 33781 records from 286 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015958-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cjbvqw
title: Occurrence Download

description: A dataset containing 352 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Myotis lucifugus (Le Conte, 1831)"
 ]
}

 The dataset includes 352 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015967-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13364948
title: Comparative proteomics analysis of whole-cell catalyst of K. rhizophila strain SA117 catabolism of SMX

description: Sulfamethoxazole (SMX), an oral sulfonamide antibiotic, presents significant environmental challenges due to its persistence and potential role in promoting antibiotic resistance. The bacterial strain Kocuria rhizophila SA117, isolated from polluted soils, has demonstrated a remarkable capability to metabolize SMX. Proteomic analysis revealed the presence of various enzymes and metabolic pathways that may contribute to SMX degradation, including those involved in para-aminobenzoate condensation and protocatechuate metabolism. Notably, the genome of SA117 harbors eight monooxygenase genes, including those related to antibiotic biosynthesis and flavin family monooxygenases. Additionally, several cytochrome c-encoding genes, known for their role in respiratory versatility and potential application in bioremediation, were identified. Genes associated with sulfur metabolism, including an iron-sulfur cluster gene cluster (SufB, C, D, R, E) linked to oxidative stress response, were also found. A comparative proteomic study under SMX exposure highlighted significant upregulation of stress-related proteins. These findings underscore the metabolic adaptability of Kocuria rhizophila SA117 and its potential application in the bioremediation of SMX-contaminated environments.
DOI: 10.5281/zenodo.13364949
title: Comparative proteomics analysis of whole-cell catalyst of K. rhizophila strain SA117 catabolism of SMX

description: Sulfamethoxazole (SMX), an oral sulfonamide antibiotic, presents significant environmental challenges due to its persistence and potential role in promoting antibiotic resistance. The bacterial strain Kocuria rhizophila SA117, isolated from polluted soils, has demonstrated a remarkable capability to metabolize SMX. Proteomic analysis revealed the presence of various enzymes and metabolic pathways that may contribute to SMX degradation, including those involved in para-aminobenzoate condensation and protocatechuate metabolism. Notably, the genome of SA117 harbors eight monooxygenase genes, including those related to antibiotic biosynthesis and flavin family monooxygenases. Additionally, several cytochrome c-encoding genes, known for their role in respiratory versatility and potential application in bioremediation, were identified. Genes associated with sulfur metabolism, including an iron-sulfur cluster gene cluster (SufB, C, D, R, E) linked to oxidative stress response, were also found. A comparative proteomic study under SMX exposure highlighted significant upregulation of stress-related proteins. These findings underscore the metabolic adaptability of Kocuria rhizophila SA117 and its potential application in the bioremediation of SMX-contaminated environments.
DOI: 10.5281/zenodo.15498979
title: Comparative proteomics analysis of whole-cell catalyst of K. rhizophila strain SA117 catabolism of SMX

description: Sulfamethoxazole (SMX), an oral sulfonamide antibiotic, presents significant environmental challenges due to its persistence and potential role in promoting antibiotic resistance. The bacterial strain Kocuria rhizophila SA117, isolated from polluted soils, has demonstrated a remarkable capability to metabolize SMX. Proteomic analysis revealed the presence of various enzymes and metabolic pathways that may contribute to SMX degradation, including those involved in para-aminobenzoate condensation and protocatechuate metabolism. Notably, the genome of SA117 harbors eight monooxygenase genes, including those related to antibiotic biosynthesis and flavin family monooxygenases. Additionally, several cytochrome c-encoding genes, known for their role in respiratory versatility and potential application in bioremediation, were identified. Genes associated with sulfur metabolism, including an iron-sulfur cluster gene cluster (SufB, C, D, R, E) linked to oxidative stress response, were also found. A comparative proteomic study under SMX exposure highlighted significant upregulation of stress-related proteins. These findings underscore the metabolic adaptability of Kocuria rhizophila SA117 and its potential application in the bioremediation of SMX-contaminated environments.
DOI: 10.15468/dl.3q5xb5
title: Occurrence Download

description: A dataset containing 8819 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Amentotaxus assamica D.K.Ferguson, Amentotaxus argotaenia (Hance) Pilg., Amentotaxus yunnanensis H.L.Li, Amentotaxus formosana H.L.Li, Amentotaxus hatuyenensis Hiep, Amentotaxus hekouensis L.M.Gao, Amentotaxus poilanei (Ferré & Rouane) D.K.Ferguson, Torreya californica Torr., Torreya taxifolia Arn., Taxus wallichiana Zucc., Cephalotaxus lanceolata K.M.Feng, Cephalotaxus hainanensis H.L.Li, Cephalotaxus mannii Hook.f., Cephalotaxus harringtonii (Knight ex J.Forbes) K.Koch, Cephalotaxus oliveri Mast., Pseudotaxus chienii (W.C.Cheng) W.C.Cheng, Taxus chinensis (Pilg.) Rehd., Taxus floridana Nutt. ex Chapm., Taxus globosa Schltdl., Taxus mairei (Lemée & Lév.) S.Y.Hu ex T.S.Liu, Taxus contorta Griff., Taxus nucifera hort. ex Parl., 1868, Torreya dapanshanica X.F.Jin, Y.F.Lu & Zi L.Chen, 2022, Torreya fargesii Franch., Torreya grandis Fortune ex Lindl., Torreya jackii Chun)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Material sample, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8819 records from 299 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015959-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15498773
title: Phlox drummondii genome assembly and gene annotation

description: The genome of Texas annual Phlox species Phlox drummondii was assembled with the aim of better understanding various evolutionary dynamics including speciation and demography.

Gene annotations were produced from multi-tissue RNA-Seq data and processed using a stringtie/hisat2 and transdecoder pipeline.
DOI: 10.5281/zenodo.15498774
title: Phlox drummondii genome assembly and gene annotation

description: The genome of Texas annual Phlox species Phlox drummondii was assembled with the aim of better understanding various evolutionary dynamics including speciation and demography.

Gene annotations were produced from multi-tissue RNA-Seq data and processed using a stringtie/hisat2 and transdecoder pipeline.
DOI: 10.15468/dl.88b7ne
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Hemiptera World (Luomus)",
 "Country is Croatia"
 ]
}

 The dataset includes 69 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015973-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15491589
title: Supplementary Data for: Semantic Zoom and Mini-Maps for Software Cities
DOI: 10.5281/zenodo.15491590
title: Supplementary Data for: Semantic Zoom and Mini-Maps for Software Cities
DOI: 10.15468/dl.2pejw6
title: Occurrence Download

description: A dataset containing 78282 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dendropsophus Fitzinger, 1843"
 ]
}

 The dataset includes 78282 records from 559 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015965-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15429593
title: Files and splits for pre-training OneProt

description: The .csv and .txt files correspond to the respective train, validation and test splits for different modalities used to pre-train OneProt. 

*seqstruc.csv structure graph modality

*saprot.txt structure token modality

*text.csv text modality

*pocket.csv pocket modality

test_all.csv a combined dataset used for the final alignment evaluation

pocket_100_residues.h5 correspond to actual data for pocket modality used for pre-training OneProt

Source code  https://github.com/klemens-floege/oneprot/tree/main

Huggingface https://huggingface.co/HelmholtzAI-FZJ/oneprot

ArXiv https://arxiv.org/abs/2411.04863
DOI: 10.5281/zenodo.15429594
title: Files and splits for pre-training OneProt

description: The .csv and .txt files correspond to the respective train, validation and test splits for different modalities used to pre-train OneProt. 

*seqstruc.csv structure graph modality

*saprot.txt structure token modality

*text.csv text modality

*pocket.csv pocket modality

test_all.csv a combined dataset used for the final alignment evaluation

pocket_100_residues.h5 correspond to actual data for pocket modality used for pre-training OneProt

Source code  https://github.com/klemens-floege/oneprot/tree/main

Huggingface https://huggingface.co/HelmholtzAI-FZJ/oneprot

ArXiv https://arxiv.org/abs/2411.04863
DOI: 10.15468/dl.7rdsd3
title: Occurrence Download

description: A dataset containing 2516 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "OccurrenceStatus is Present",
 "TaxonKey is Lycalopex culpaeus (Molina, 1782)"
 ]
}

 The dataset includes 2516 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015975-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rucf7g
title: Occurrence Download

description: A dataset containing 51274 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Pouteria Aubl."
 ]
}

 The dataset includes 51274 records from 666 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015974-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.825398.v1
title: Phosphate removal from aqueous solutions by nanoscale zero-valent iron

description: In this study, nanoscale zero-valent iron (NZVI) was synthesized by conventional liquid-phase chemical reduction methods without a support material and then characterized by transmission electron microscopy (TEM), scanning electron microscopy (SEM) and X-ray diffraction (XRD). The effect of NZVI particles on phosphate removal from aqueous solutions was examined. The results showed that the phosphate removal efficiency increased from 34.49% to 87.01% as the dosage of nanoscale iron particles increased from 100 to 600 mg L<sup>−1</sup> with an initial phosphate concentration of 10 mg L<sup>−1</sup>, and the phosphate removal efficiency decreased from 72.89% to 51.39% as the initial phosphate concentration increased from 10 to 90 mg L<sup>−1</sup>, with 400 mg L<sup>−1</sup> NZVI. Phosphate removal efficiencies of 99.41% and 95.09% were achieved at pH values of 2 and 4, respectively, with an initial phosphate concentration of 20 mg L<sup>−1</sup> and 400 mg L<sup>−1</sup> NZVI. The use of NZVI particles synthesized in a carboxymethyl cellulose (CMC)–water solution significantly enhanced phosphate removal from an aqueous solution compared with the use of NZVI synthesized in an ethanol–water solution. NZVI particles achieved 71.34% phosphate removal, which was remarkably higher than that of microscale zero-valent iron (MZVI) particles (16.35%) with 10 mg L<sup>−1</sup> of phosphate and 400 mg L<sup>−1</sup> iron. Based on the removal mechanism analysis performed in this study, we recommend that phosphate removal be accomplished by simultaneous adsorption and chemical precipitation. The XRD patterns of the NZVI before and after the reactions indicated the formation of crystalline vivianite (Fe<sub>3</sub>(PO<sub>4</sub>)<sub>2</sub>·8H<sub>2</sub>O) during the procedure.