cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.qvrwzg
title: Occurrence Download

description: A dataset containing 179 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sceloporus aureolus Smith, 1942"
 ]
}

 The dataset includes 179 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002092-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rvzaxu
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((25.8677 35.5574,44.91996 35.5574,44.91996 42.58228,25.8677 42.58228,25.8677 35.5574))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Gundelia tournefortii L."
 ]
}

 The dataset includes 94 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002093-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7dpjve
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Squalus carcharias Linnaeus, 1758",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002094-250127130748423/datasets/export for details.
DOI: 10.15468/dl.25vv4h
title: Occurrence Download

description: A dataset containing 992 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sceloporus bicanthalis Smith, 1937"
 ]
}

 The dataset includes 992 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002097-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/unnc2d
title: Clonal Citrus trees collection (PPGR-CITRUS-01)

description: The dataset comprises 220 clonal accessions of the genus Citrus (Rutaceae), recognized for their agronomic, historical, and ornamental significance. The plants are cultivated in open fields. Maintenance: Callus and seeds are stored under controlled temperature and humidity conditions. Germination and reproduction protocols are periodically implemented to ensure the replacement and reintegration of seeds into the collection. Multiplication: Propagation is primarily achieved through seeds and cuttings. The main objective of the PPGR collection is to safeguard the genetic resources of perennial plants that are valuable for Italian and Mediterranean agriculture.
DOI: 10.15468/dl.ea7dzp
title: Occurrence Download

description: A dataset containing 3311 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mugil cephalus Linnaeus, 1758",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3311 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002096-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.be838n
title: Occurrence Download

description: A dataset containing 2485 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elaeocarpus sylvestris (Lour.) Poir."
 ]
}

 The dataset includes 2485 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002099-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n3ncnm
title: Occurrence Download

description: A dataset containing 15790 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elaeocarpus reticulatus Sm."
 ]
}

 The dataset includes 15790 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002098-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m324gp
title: Occurrence Download

description: A dataset containing 3549 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Enterolobium contortisiliquum (Vell.) Morong"
 ]
}

 The dataset includes 3549 records from 221 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002100-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/3m6h-a9ju
title: Measurement of Inorganics in precipitation at Råö

description: Measurement of Inorganics in precipitation at Råö
DOI: 10.15468/dl.7s7yw7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mugil capurrii (Perugia, 1892)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002101-250127130748423/datasets/export for details.
DOI: 10.15468/dl.djvw4y
title: Occurrence Download

description: A dataset containing 3045 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sceloporus formosus Wiegmann, 1834"
 ]
}

 The dataset includes 3045 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002102-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28296383
title: DNA files of all substrate proteins produced and described in Ryan et al., "A signaling inspired synthetic toolkit for efficient production of tyrosine phosphorylated proteins"

description: Tyrosine phosphorylation is an important post-translational modification that regulates many biochemical signaling networks in multicellular organisms. To date, 46,000 tyrosines have been observed in human proteins, but relatively little is known about the function and regulation of most of these sites. A major challenge has been producing recombinant phosphoproteins in order to test the effects of phosphorylation. Mutagenesis to acidic amino acids often fails to replicate the size and charge of a phosphorylated tyrosine residue and synthetic amino acid incorporation has high cost with relatively low yield. Here, we demonstrate an approach, inspired by how native tyrosine kinases find targets in cells -- through a secondary targeting interaction, augmenting innate catalytic specificity of a tyrosine kinase, without overriding it. We engineered complementary vector systems for multiple approaches to producing high yields of phosphoprotein products in E. coli. Here, we test phosphorylation as a function of the targeting interaction (an SH3-polyproline sequence) affinity, different reaction methods across kinases of different specificity. This system presents an inexpensive and tractable system to producing phosphoproteins and phosphopeptides and we demonstrate how it can be used for testing antibody specificity on targets of EGFR and PD-1. This methodology is a generalizable approach for enhancing the enzymatic action on a recombinant protein via the flexibility of in vitro reactions and co-expression approaches. We refer to this as SISA-KiT, for Signaling Inspired Synthetically Augmented Kinase Toolkit. <br>Described in detail at "A signaling inspired synthetic toolkit for efficient production of tyrosine phosphorylated proteins" Margaret M. Ryan, Reagan Portelance, Graham F. Newman, Gabrielle Martinez, Swathi Shekharan, Anqi Wu, Savannah Angel, Katherine E. Schaberg, Petra Gilmore, Robert Sprung, Reid Townsend, Kristen M. Naegle bioRxiv 2024.12.22.629992; doi: https://doi.org/10.1101/2024.12.22.629992
DOI: 10.15468/dl.kenb2v
title: Occurrence Download

description: A dataset containing 814 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eriotheca pubescens (Mart. & Zucc.) Schott & Endl."
 ]
}

 The dataset includes 814 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002103-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/29pj-9557
title: Indonesia Compact - Green Prosperity: Peatland Grant Portfolio: Final Analysis Report
DOI: 10.3886/rddk-5g14
title: Indonesia Compact - Green Prosperity: Peatland Grant Portfolio: Final Analysis Report
DOI: 10.15468/dl.6gntab
title: Occurrence Download

description: A dataset listing the 106 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "DatasetKey is MEXU/Colección de Briofitas"
 ]
}

 The dataset's 106 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042773-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13137398
title: Global gridded maps of yield potential of the Global Yield Gap Atlas (GYGA)

description: A complete description of maps' methods, accuracy, strengths, and limitations is available in Aramburu-Merlos et al. (Nat. Food, 2024). 

Briefly, we combined site-specific yield potential estimates of the Global Yield Gap Atlas with gridded environmental predictors in a machine-learning metamodel to generate global maps of yield potential at a 30-arc-second resolution for maize, wheat, and rice, separately for irrigated and rainfed conditions. Model predictions were restricted to their area of applicability and lands harvested with the given crop and water regime condition (harvested area > 0.5% according to SPAM v2.0).
DOI: 10.5281/zenodo.12209708
title: Global gridded maps of yield potential of the Global Yield Gap Atlas (GYGA)

description: A complete description of maps' methods, accuracy, strengths, and limitations is available in Aramburu-Merlos et al. (Nat. Food, 2024). 

Briefly, we combined site-specific yield potential estimates of the Global Yield Gap Atlas with gridded environmental predictors in a machine-learning metamodel to generate global maps of yield potential at a 30-arc-second resolution for maize, wheat, and rice, separately for irrigated and rainfed conditions. Model predictions were restricted to their area of applicability and lands harvested with the given crop and water regime condition (harvested area > 0.5% according to SPAM v2.0).
DOI: 10.5281/zenodo.12209709
title: Global gridded maps of yield potential of the Global Yield Gap Atlas (GYGA)

description: The preprint of the paper describing the methods is available at: https://doi.org/10.21203/rs.3.rs-3545267/v1

This description will be updated soon...
DOI: 10.15468/dl.8r2trk
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is BRA.16_1",
 "TaxonKey is Branchiopoda"
 ]
}

 The dataset includes 13 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042779-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8221706
title: MLFF Training Dataset for six Perovskite Systems APbX3 (A=Cs, MA, FA; X = Br, I)

description: Local configuration ML_AB files in VASP format, calculated with (on-the-fly selection) DFT calculations. r2SCAN exchange-correlation functional is used. The local configurations cover the following phases of each material. 



	
CsPbI3: cubic (a0a0a0), tetragonal (a0a0c+), orthorhombic (a-a-c+)
	
CsPbBr3: cubic (a0a0a0), tetragonal (a0a0c+), orthorhombic (a-a-c+)
	
MAPbI3: cubic (a0a0a0), tetragonal (a0a0c-), orthorhombic (a-a-c+)
	
MAPbBr3: cubic (a0a0a0), tetragonal (a0a0c-), orthorhombic (a-a-c+)
	
FAPbI3: cubic (a0a0a0), tetragonal (a0a0c+), orthorhombic (a+a+a+)
	
FAPbBr3: cubic (a0a0a0), tetragonal (a0a0c+), orthorhombic (a+a+a+)
DOI: 10.5281/zenodo.8221707
title: MLFF Training Dataset for six Perovskite Systems APbX3 (A=Cs, MA, FA; X = Br, I)

description: Local configuration ML_AB files in VASP format, calculated with (on-the-fly selection) DFT calculations. r2SCAN exchange-correlation functional is used. The local configurations cover the following phases of each material. 



	
CsPbI3: cubic (a0a0a0), tetragonal (a0a0c+), orthorhombic (a-a-c+)
	
CsPbBr3: cubic (a0a0a0), tetragonal (a0a0c+), orthorhombic (a-a-c+)
	
MAPbI3: cubic (a0a0a0), tetragonal (a0a0c-), orthorhombic (a-a-c+)
	
MAPbBr3: cubic (a0a0a0), tetragonal (a0a0c-), orthorhombic (a-a-c+)
	
FAPbI3: cubic (a0a0a0), tetragonal (a0a0c+), orthorhombic (a+a+a+)
	
FAPbBr3: cubic (a0a0a0), tetragonal (a0a0c+), orthorhombic (a+a+a+)
DOI: 10.15468/dl.2xqn8y
title: Occurrence Download

description: A dataset containing 656 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Material citation, Material sample)",
 "DatasetKey is one of (UCM Amphibian and Reptile Collection (Arctos), LACM Vertebrate Collection, Actualización y enriquecimiento de las bases de datos del proyecto de evaluación y análisis geográfico de la diversidad faunística de Chiapas, KUBI Herpetology Collection, MVZ Herp Collection (Arctos), Computarización de las colecciones de vertebrados terrestres de la Escuela Nacional de Ciencias Biológicas, IPN Fase 4 (Anfibios y reptiles), Universidad del Valle de Guatemala - Colecciones Biológicas - Reptiles, Fortalecimiento de las colecciones de ECOSUR. Primera fase (Herpetológica Chetumal), NMNH Extant Specimen Records (USNM, US), Digitalización y Sistematización de las Colecciones Biológicas Nacionales del Instituto de Biología, UNAM (vertebrados))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is one of (ff90b050-c256-11db-b71b-b8a03c50a862, 4cadac10-3e7b-11d9-8439-b8a03c50a862, 493fe050-055d-11d8-b84f-b8a03c50a862, b554c320-0560-11d8-b851-b8a03c50a862, 8edbbde0-055e-11d8-b850-b8a03c50a862, 5c1a4c27-795a-4294-aecc-46d7176706b7, bc092ff0-02e4-11dc-991f-b8a03c50a862)",
 "TaxonKey is Drymobius margaritiferus (Schlegel, 1837)",
 "Year 1950-2024"
 ]
}

 The dataset includes 656 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042780-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26408395
title: <b>Insilico Exploration of </b><b><i>C. koseri</i></b><b> ATP Synthase Inhibitors by Pharmacophore-Based Virtual Screening, Molecular Docking and MD Simulation</b>

description: The raw data used to generate the graphs.
DOI: 10.6084/m9.figshare.26408395.v1
title: <b>Insilico Exploration of </b><b><i>C. koseri</i></b><b> ATP Synthase Inhibitors by Pharmacophore-Based Virtual Screening, Molecular Docking and MD Simulation</b>

description: The raw data used to generate the graphs.
DOI: 10.15468/dl.dee88n
title: Occurrence Download

description: A dataset containing 1045026 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2024-06-04",
 "EventDate is less than or equal to 2024-07-04",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 1045026 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042759-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18739/a2fx7408p
title: Ice, Cloud, and land Elevation Satellite-2 (ICESat-2) L4 Monthly Gridded Sea Ice Thickness, Version 2, Arctic Ocean, 2018 - 2022

description: This data set reports monthly, gridded winter sea ice thickness across the Arctic Ocean. This data set reports monthly, gridded winter sea ice thickness across the Arctic Ocean. Sea ice thickness is estimated using ATLAS/ICESat-2 L3A Sea Ice Freeboard (ATL10), Version 5 data and NASA Eulerian Snow On Sea Ice Model (NESOSIM) snow loading. Details on the along-track data can be found in Petty et al. (2020).
 Petty, A. A., Kurtz, N. T., Kwok, R., Markus, T., &amp; Neumann, T. A. (2020). Winter Arctic sea ice thickness from ICESat‐2 freeboards. Journal of Geophysical Research: Oceans, 125(5), e2019JC015764. https://doi.org/10.1029/2019JC015764
DOI: 10.26025/1912/69819
title: First evidence for widespread sharing of stereotyped non-signature whistle types by wild dolphins

description: Bottlenose dolphins (Tursiops truncatus) have long fascinated animal communication researchers due to their large brains and varied communicative signals. However, studying dolphin communication is challenging due to difficulties in identifying which individual is making a sound. A long-term study of a resident population of free-ranging dolphins in waters near Sarasota, Florida, employs brief catch-and-release as a research tool for health assessments, and this has enabled us to obtain high-quality recordings of known individual dolphins for 4 decades. We have a catalog of the individually distinctive signature whistles (SW) of most animals in the community; these referential signals function much like human names. Whistles other than the signature, known as “non-signature whistles” (NSW) are very poorly understood. We are building a catalog of stereotyped NSWs that are shared by more than one individual, and have so far identified more than 20 shared NSW types, two of which were produced by at least 25 different individuals. These whistles were recorded both during health assessments and from free-swimming dolphins wearing non-invasive, suction-cup attached digital acoustic tags (DTAGs), which we are able deploy on dolphins prior to release. We have embarked on playback studies to study the functions of both SW and shared NSW, in which we film movement responses with drones and record vocal responses with hydrophones and DTAGs. Control trials (n=21), in which we played the target dolphin’s own SW, elicited approach in 76% of trials in which we were able to observe the response. These data support the affiliative nature of SW copies, which appear to function as a way to initiate contact with another individual. Playbacks of a widely shared NSW, NSWA (n=8 trials), consistently elicited avoidance responses (100% of 6 observed trials) , suggesting an alarm or warning type function. Another widely shared NSW, NSWB, has elicited varying responses in 8 trials, depending on the age and sex of the target dolphin. NSWB was also produced by the target dolphin in response to 2 playback trials. Our suggested function of NSWB is a “query”- type whistle, produced when something unexpected or unfamiliar is heard. In this case, we would expect different responses depending on age and sex class, for example with males likely being more interested in exploring unfamiliar stimuli than females with calves. Overall, this research presents the first evidence for shared, stereotyped, context-specific whistles in bottlenose dolphins, and suggests that NSWs play an important role in the dolphin communication system.
DOI: 10.6084/m9.figshare.26406331
title: Data and R code from "Prescribed fire reduces wildfire severity to highly valued re-sources and assets in the Southeastern US"

description: This archive contains data and R code used to evaluate the effectiveness of prescribed fire for mitigating wildfire severity. All data and used in this analysis are publicly available.The 'eddi' directory contains the Evaporative Demand Drought Index data in .csv format, downloaded from https://psl.noaa.gov/eddi/.The 'landfire' directory contains the LANDFIRE vegetation data in .tif format, downloaded from https://www.landfire.gov/vegetation.The 'mtbs' directory contains the wildfire data in .tif format, downloaded from the Monitoring Trends in Burn Severity (MTBS) data portal at https://www.mtbs.gov/direct-download.The 'rx' directory contains the original prescribed fire records in .shp format for the National Wildlife Refuges (NWRs), obtained by submitting a data request to U.S. Fish and Wildlife Service (USFWS) Open Data portal (https://gis-fws.opendata.arcgis.com/).
DOI: 10.6084/m9.figshare.26406331.v1
title: Data and R code from "Prescribed fire reduces wildfire severity to highly valued re-sources and assets in the Southeastern US"

description: This archive contains data and R code used to evaluate the effectiveness of prescribed fire for mitigating wildfire severity. All data and used in this analysis are publicly available.The 'eddi' directory contains the Evaporative Demand Drought Index data in .csv format, downloaded from https://psl.noaa.gov/eddi/.The 'landfire' directory contains the LANDFIRE vegetation data in .tif format, downloaded from https://www.landfire.gov/vegetation.The 'mtbs' directory contains the wildfire data in .tif format, downloaded from the Monitoring Trends in Burn Severity (MTBS) data portal at https://www.mtbs.gov/direct-download.The 'rx' directory contains the original prescribed fire records in .shp format for the National Wildlife Refuges (NWRs), obtained by submitting a data request to U.S. Fish and Wildlife Service (USFWS) Open Data portal (https://gis-fws.opendata.arcgis.com/).
DOI: 10.5517/ccdc.csd.cc2j7trc
title: CCDC 2331223: Experimental Crystal Structure Determination

description: Related Article: Shaonan Liu, Jinmin Gao, Yike Zou, Yang Hai|2024|J.Am.Chem.Soc.|146|20263|doi:10.1021/jacs.4c05581
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2j7tsd
title: CCDC 2331224: Experimental Crystal Structure Determination

description: Related Article: Shaonan Liu, Jinmin Gao, Yike Zou, Yang Hai|2024|J.Am.Chem.Soc.|146|20263|doi:10.1021/jacs.4c05581
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2j7ttf
title: CCDC 2331225: Experimental Crystal Structure Determination

description: Related Article: Shaonan Liu, Jinmin Gao, Yike Zou, Yang Hai|2024|J.Am.Chem.Soc.|146|20263|doi:10.1021/jacs.4c05581
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.