cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22439002.v1
title: Patterns of acorn selection in Peromyscus mice and possible implications for oak range shifts in a changing climate

description: The dataset contains necessary files to replicate the analyses in the article: Dri, G. F., Hunter Jr, & Mortelliti, A. (2022). Patterns of acorn selection in Peromyscus mice species and possible implications for oak range shifts in a changing climate. Currently submitted for publication. Please contact the authors if you would like to collaborate on a project using these data. If additional comments or questions arise, please contact Gabriela Franzoi Dri (gabriela.franzoi@maine.edu) or Alessio Mortelliti (alessio.mortelliti@maine.edu).
DOI: 10.6084/m9.figshare.28904906.v2
title: <b>Species removal dampens the scale dependency of ecological determinism and stochasticity in coastal communities.</b>

description: Deterministic and stochastic processes control community dynamics. However, the responses of both processes to the loss of foundation species, which strongly influence community dynamics across spatial scales, are unclear. We experimentally examined how spatial extent and foundation species removal affect rocky-intertidal community dynamics over three years in eight field sites spanning ~1000 km along the southeastern Pacific. The normalised stochasticity ratio (NST), which distinguishes between stochastic (&gt;50%) and deterministic (&lt;50%) community dynamics, decreased with spatial extent for sessile and mobile species, with consistently lower values under foundation species removal for sessile communities. The effect of foundation species removal on NST was strongest in smaller sessile communities and diminished as spatial extent increased, while mobile communities showed no significant response to the disturbance. Our experimental results demonstrate that the loss of foundation species disrupts the scale dependency of ecological mechanisms, highlighting its negative implications for biodiversity conservation and ecosystem functioning.
DOI: 10.6084/m9.figshare.3530822.v1
title: Data Paper. Data Paper

description: File List 761BiodiversityEffects1974-2004.txt -- File is 761 records, not including header row, Ascii text, tab delimited. No compression scheme was used. Missing data denoted as "NA". Description This metadata set contains 761 effects of biodiversity on ecosystem, community, or population response variables reported in 137 publications from 1974 to June 2004. All data were obtained in experimental studies. Relationships between species richness or other biodiversity measures and response variables are described by their shape, direction, significance, and, if available, the simple (regression) or multiple (analysis of variance) correlation coefficient. We classified response variables into groups according to the ecosystem function or service to which they were related, the trophic level at which they were measured, and several other classification schemes. Similarly, we classified studies into groups according to ecosystem type, experimental system (bottle/pot, greenhouse, field), range and trophic level of biodiversity treatments, and further design variables. Covariates include location of study, number of plots, and number of species used in the biodiversity treatments. Analyses of these metadata have shown, for example, that biodiversity effects on community (and ecosystem) variables are often positive, and those on population variables negative, that stocks are more responsive than rates to biodiversity manipulation, and that bottom-up biodiversity effects in multi-trophic studies are often negative. This metadata set gives a representative overview over the results of a first generation of biodiversity experiments and allows a quantitative assessment of the influence of a number of biological and design variables on the significance and shape of the relationship between biodiversity and response variables. <i>Key words: aquatic ecosystems; biodiversity experiments; design variables; ecosystem functioning; ecosystem services; effect size; significance; terrestrial ecosystems; trophic level.</i>
DOI: 10.6084/m9.figshare.5104576.v1
title: Supplementary Material for: De novo Subtelomeric Deletion Additional to an Inherited Apparently Balanced Reciprocal Translocation

description: <i>Objective:</i> We describe the analysis of an apparently balanced inherited reciprocal translocation in a fetus presenting with multiple congenital abnormalities, characterize the structural chromosome rearrangement, and report an unexpected additional imbalance to the inherited rearrangement. <i>Methods:</i> DNA microarray was used to screen for genomic imbalance in subtelomeric and interstitial critical regions. High-resolution comparative genomic hybridization was used to screen for genomic imbalance at a genome-wide level. Fluorescence in situ hybridization using whole-chromosome painting and specific probes was used to characterize the inherited translocation, and the size of the de novoadditional deletion. <i>Results:</i> An unexpected additional deletion was found in 7qter on derivative 10 of the inherited maternal reciprocal translocation t(7;10)(q11.23; p14). <i>Conclusions:</i> We show the usefulness of genome-wide and specific molecular cytogenetic techniques to explore apparently balanced rearrangements.
DOI: 10.5522/04/29118212.v2
title: Benchmark dataset Turbulent Channel Flow for Chaos Meets Attention: Transformers for Large-Scale Dynamical Prediction

description: This dataset serves as a benchmark for 3D turbulent channel flows, based on simulations performed using a high-fidelity lattice Boltzmann method (LBM) solver, as described in Xue et al., Phys. Fluids, 34,5, 2022.It comprises 240 trajectories generated from 3D periodic turbulent channel flow simulations with a fixed relaxation time, $\tau = 0.5025$. We extract the central cross-section of the domain along the streamwise ($x$) direction with 3 coordinate components. The spatial resolution is $192 \times 192$, and the<b> friction Reynolds number</b> is set to $Re_{\tau} = 180$, equivalent to $Re = 3250$. The dataset is split into 192 training, 24 validation, and 24 test trajectories, all provided in <i>.npy</i> format.This dataset is designed to facilitate machine learning research in dynamical systems, especially in the challenging context of high-dimensional, turbulent flow regimes.
DOI: 10.6084/m9.figshare.16557609.v1
title: Dry weight of emerged bees

description: Dry weight of western honey bees emerged from larvae fed different diets.<br>Key to variable names & types:<br>colony -- colony ID (categorical)plate -- test plate ID (categorical)number -- larva ID (categorical)treatment -- diet type (categorical)fresh -- fresh weight (g) (numerical)<br>
DOI: 10.6084/m9.figshare.17324009.v1
title: Daily melt flux estimated from PROMICE measurements (codes and outputs)

description: Daily melt flux estimated from PROMICE measurements based on a surface energy balance model.<br><br>
DOI: 10.6084/m9.figshare.26056549.v1
title: Meta-analysis data extraction.xlsx

description: Meta-analysis database for the paper.
DOI: 10.6084/m9.figshare.22618999.v2
title: Presence of 6PPD-quinone in runoff water samples

description: The overview of raw files used in publication (<strong>Presence of 6PPD-quinone in runoff water samples from Norway using a new LC–MS/MS method.</strong> <em>Fedor Kryuchkov, Anders Foldvik, Roar Sandodden, Silvio Uhlig).</em> · <strong>“Validation round 1”:</strong> LC-MS/MS files of calibration curve, five replicates of spiked samples at level 43 ng/L and 5 ng/L. Samples were analysed on first round. · <strong>“Validation round 2”:</strong> Same samples were analysed on second round. · <strong>“Validation round 3”:</strong> Same samples were analysed on third round. · <strong>“Validation round 4”:</strong> Same samples were analysed on fourth round. · <strong>“Validation round 5”:</strong> Same samples were analysed on fifth round. · <strong>“Abs recovery”:</strong> LC-MS/MS files used for calculation of absolute recovery (recovery factor). Three replicates at level 23 ng/L and three replicas at level 500 ng/L. For runs REC_XXX_X internal sample was added before extraction, for runs REC_XXX_REFX internal standard was added after extraction. · <strong>“M1 vs M2”:</strong> LC-MS/MS files used for preparation fig 2. RP_M1 file represents output file, which was obtained by analysis of Sample S3 in accordance with Method 1 (reverse phase SPE). NP_M2 was acquired in same conditions, but sample was treated in accordance with Method 2 (normal phase SPE). · <strong>“S1-S9”:</strong> List of LC-MS/MS files acquired for running samples S1-S9, prepared in accordance with Method 2. File were recorded during 2021-2023.
DOI: 10.6084/m9.figshare.29142953.v1
title: An Empirical Study on the Use of Augmented Reality in Cosmetic Product Purchases by Extending The TAM Model and Engagement Framework

description: This study aims to analyze the influence of the Technology Acceptance Model framework, consisting of perceived usefulness and perceived ease of use, on attitudes and behavioral intentions in purchasing cosmetic products using AR. In addition, customer engagement as an extension construct is hypothesized to influence consumer attitudes toward augmented reality technology
DOI: 10.6084/m9.figshare.7886579.v1
title: Multi track recordings

description: Multi track files with synchronised audio from five separate recording devices. For location of the devices, see xls file.https://doi.org/10.1121/1.5092973<br>
DOI: 10.6084/m9.figshare.29064560.v1
title: Bougainvillia cf. muscus genome assembly

description: Final genome assembly for Bougainvillia cf. muscus. 350 contigs.Protein models and GTF file for Bougainvillia cf. muscus genome assembly. Output from BRAKER3.<br>
DOI: 10.6084/m9.figshare.7445657.v1
title: Tower- and chamber-based greenhouse gas flux measurements from Howland Forest, Maine (2012-2018)

description: Carbon dioxide (CO<sub>2</sub>), methane (CH<sub>4</sub>), and nitrous oxide (N<sub>2</sub>O) are the greenhouse gases largely responsible for anthropogenic climate change. Natural plant and microbial metabolic processes play a major role in the global atmospheric budget of each. We have been studying ecosystem-atmosphere trace gas exchange at a sub-boreal forest in the northeastern United States for over two decades. Historically our emphasis was on turbulent fluxes of CO<sub>2</sub> and water vapor. In 2012 we embarked on an expanded campaign to also measure CH<sub>4</sub> and N<sub>2</sub>O. Here we present continuous tower-based measurements of the ecosystem-atmosphere exchange of CO<sub>2</sub> and CH<sub>4</sub>, recorded over the period 2012-2018 and reported at a 30-minute time step. Additionally, we describe a five-year (2012-2016) dataset of chamber-based measurements of soil fluxes of CO<sub>2</sub>, CH<sub>4</sub>, and N<sub>2</sub>O (2013-2016 only), conducted each year from May to November. These data can be used for process studies, for biogeochemical and land surface model validation and benchmarking, and for regional-to-global upscaling and budgeting analyses.
DOI: 10.6084/m9.figshare.7803398.v1
title: NMDetective

description: # Genome-wide predictions of NMD efficacy described in Lindeboom et al, Nature Genetics, 2019.<br>The NMDetective resource predicts the efficacy of nonsense-mediated mRNA decay for a pre-mature stop codon at every protein-coding nucleotide in the human and mouse genome. NMD scores range from ~0, indicating no mRNA degradation by NMD, to &gt;0.52, indicating strong mRNA degradation. NMDetectiveA is a comprehensive prediction of NMD efficacy by Random Forest regression. NMDetectiveB is a simplified and fully transparent decision tree model that predicts NMD efficacy based on the EJC-model, distance to the start codon, and the length of the affected exon.<br>This fileset contains the NMDetectiveA and B predictions on the UCSC knownGene databases of the hg38, hg19, mm10 and mm9 genome builds in GTF/GFF2.2 format. The NMD scores are added as an attribute to each protein-coding exon as comma separated values per nucleotide.<br>Non-overlapping bedGraphs of the NMDetectiveA and NMDetectiveB predictions are also accessible and visualized in the following UCSC genome browser sessions:<br>http://genome-euro.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=Rik Lindeboom&hgS_otherUserSessionName=hg19_NMDetective <br>http://genome-euro.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=Rik Lindeboom&hgS_otherUserSessionName=hg38_NMDetective <br>http://genome-euro.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=Rik Lindeboom&hgS_otherUserSessionName=mm9_NMDetective <br>http://genome-euro.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=Rik Lindeboom&hgS_otherUserSessionName=mm10_NMDetective<br><br>
DOI: 10.17632/ffx6nd5zyb
title: Efficacy and Safety of Ruxolitinib Cream for the Treatment of Atopic Dermatitis: Results From Two Phase 3, Randomized, Double-Blind Studies

description: Supplemental data for an article published in the Journal of the American Academy of Dermatology
DOI: 10.6084/m9.figshare.7619255.v1
title: Data files in .CSV format

description: Data from the experiment described in a paper published in Frontiers of Ecology and Evolution<br>
DOI: 10.17632/hzzhnrtwxh
title: Caregiver's experience of Rehabilitation for children with cerebral palsy: A Qualitative Study

description: The aim of the study was to explore the caregiver's experience of rehabilitation for children with cerebral palsy. The hypothesis of the study was that caregivers had a major role in rehabilitation process and rehabilitation helps in improving the motor and social milestones of the child with cerebral palsy. It was a qualitative study in which in-depth face to face, semi structured interviews were taken from 11 caregivers of cerebral palsy from different rehabilitation centres. A questionnaire was deveoped by the prime reseacher in which questions regarding the rehabilitation experience, barriers and facilitators, social engagemnet were framed. The interview questions were based on a thorough review of literature. Participants who were caregiver of a child with cerebral palsy and who volunteered to participate in the study were included in this study. Participants who had communication problems were excluded. The interviews were audio recorded and were written in english & transcribed verbatim. The transcribed interviews were then entered into a QDA Miner Lite software for data analysis. The data analysis was done and various themes and sub themes were obtained from interview transcripts. Total 10 themes and 46 sub-themes were obtained. The themes were staff, overall experience, motor recovery, Barriers & facilitators in rehabilitation, cognitive and perceptual abilities, caregiver's burden, psychological effects, glimmer of hope, speech. The participants discussed their experiences with the interaction with the staff at rehabiltation centre. They told about the Motor recovery of the child which included Improvement in oromotor functions, improvement in motor milestones, improved activities of daily living, improved posture and prevention of secondary complications as a result of rehabilitation. These findings have an important role in clinical settings and rehabilitation of a child with cerebral palsy. The coded transcripts were also sent back to participants for member checking. On the basis of this study , it was concluded that caregivers had a major role in prognosis of the child.Also rehabilitation plays an important role in achieving the motor milestones in the children with cerebral palsy.
DOI: 10.17632/j8d8pfkvj2
title: Vibration and Motor Current Dataset of Rolling Element Bearing Under Varying Speed Conditions for Fault Diagnosis: Subset3

description: This dataset discloses vibration and motor current data for bearing faults under varying speed conditions from 680 RPM to 2460 RPM. The bearing conditions include healthy bearing, bearings with inner race faults, and bearings with outer race faults. For each faulty bearing condition, the three-phase induction motor is operated under randomly varying speed conditions. 
Important: Datasets are divided into three parts because of storage limitations (Subset1, Subset2, and Subset3). 

---- Description of vibration file format ----
Vibration data file contains five columns namely ‘Time Stamp’, ‘x_direction_housing_A’, ‘y_direction_housing_A’, ‘x_direction_housing_B’, and ‘y_direction_housing_B’. The unit of the vibration is ‘gravitational constant (g)’. 
vibration_aaaa_bbbb.csv : This file is "bbbb"-th vibration data includes rotating speed data of the condition of "aaaa".

---- Description of motor current file format ----
Motor current data file contains five columns namely ‘Time Stamp’, ‘R_phase’, ‘S_phase’, and ‘T_phase’. The unit of the motor current is ‘Ampare (A)’.

current_aaaa_bbbb.csv : This file is "bbbb"-th motor current data includes rotating speed data of the condition of "aaaa".

---- Description of rotating speed file format ----
Rotating speed data file contains two columns namely ‘Time Stamp’, and ‘speed’. The unit of the acoustic is revolutions per minute (RPM)’.
rpm_aaaa_bbbb.csv : This file is "bbbb"-th speed data includes rotating speed data of the condition of "aaaa".


For more detailed information, check our published paper.
Title: Vibration, Acoustic, Temperature, and Motor Current Dataset of Rotating Machine Under Varying Operating Conditions for Fault Diagnosis
Link: https://www.sciencedirect.com/journal/data-in-brief
DOI: 10.17632/zdsgxwksn5
title: Dataset on Voltage and Current Data Acquisition During Broadband Electrochemical Impedance Spectroscopy of Lithium-Ion Batteries for Different Values of the State of Charge

description: The Electrochemical impedance spectroscopy (EIS) were measured on four brand new Samsung cylindrical  ICR18650-26J rechargeable  lithium-Ion batteries at SoC 100%, 90%, 80%, 70%, 60%, 50%, 40%, 30%, 20%, and 10%.  The measurements were repeated six times for each battery. Measurements on other batteries will be added to the dataset when available.
Please note that this dataset contains the raw voltage and current data acquisition files in *.mat Matlab format. You will find computed EIS in the linked dataset.
DOI: 10.6084/m9.figshare.25238527.v1
title: Methow River data

description: The study of food web variation across space and through time in a floodplain segment of the Methow River, WA, in order to examine theoretical predictions of food web ecology and to explore the efficacy of aquatic habitat restoration for salmon and steelhead.
DOI: 10.17632/4pmjj3dbvr
title: Design Data for the 3D Printer Modification to Print Gels and Pastes and the Corresponding Firmware

description: In order to deposit gel and paste-like materials, a commercially available HICTOP Prusa i3 plastic 3D printer was modified. The modification included replacing the existing plastic microextruder with a customised 3D printed syringe pump which could hold a syringe containing the printing material. The arrangement also allowed the temperature in the syringe to be controlled. Since the hardware of the printer was changed significantly, a new firmware was loaded on the 3D printer which was also customised to enable it to perform its new function. The present data consists of the 3D image files of the syringe pump assembly and instructions on how to assemble the components. It also provides a copy of the modified firmware with a list of the changes made to it. This data will allow the readers to modify a similar type of 3D printer to print pastes and gels. This can be achieved by recreating the entire syringe pump assembly by 3D printing the given 3D image file data. With some changes, these designs can also be adapted to a variety of different printers. Similarly, the given firmware can also be loaded onto a similar type of printer. The list and explanation of the changes made to the firmware also allow such changes to be made to the respective firmware of a variety of different printers.
DOI: 10.17632/8r4z4wvyp4
title: The homogenized radiosonde humidity data during 1958-2008 and homogenized radiosonde temperature data during 1958-2020

description: The homogenized radiosondehumidity and temperature data, which is used in the paper entitled “The atmosphere has become increasingly unstable during 1979-2020 over the Northern Hemisphere”. Dataset references： Dai, A., Wang, J., Thorne, P. W., Parker, D. E., Haimberger, L., & Wang, X. L. (2011). A new approach to homogenize daily radiosonde humidity data. Journal of Climate, 24(4), 965–991. https://doi.org/10.1175/2010JCLI3816.1 Wang, J., Zhang, L., Dai, A., Immler, F., Sommer, M., & Vömel, H. (2013). Radiation dry bias correction of Vaisala RS92 humidity data and its impacts on historical radiosonde data. Journal of Atmospheric and Oceanic Technology, 30(2), 197–214. https://doi.org/10.1175/JTECH-D-12-00113.1 Zhou, C., Wang, J., Dai, A., & Thorne, P. W. (2021). A new approach to homogenize global subdaily radiosonde temperature data from 1958 to 2018. Journal of Climate, 34(3), 1163–1183. https://doi.org/10.1175/JCLI-D-20-0352.1
DOI: 10.17632/h49fpprg6c
title: Avocado tree point clouds with class labels

description: LiDAR scans of 24 avocado trees from several years. Each point cloud has been annotated with two labels: one label for leaf (0) vs trunk (1) matter, and another for which tree each point belongs to: ground (0), center tree (1), north tree (2), south tree (3), uncategorised (4). Each point cloud is stored as a binary file with the following format (ui = 4-byte unsigned integer, d = 8-byte double): 3d,2ui,d Each line in the file has the fields: x,y,z,matter_label,tree_label,height XYZ is in North-East-Down orientation. The data was created in, and is easy to view using, ACFR comma/snark open-source tools (https://github.com/acfr/comma/wiki) Also included in the dataset is a list of trunk points in simple CSV format with tree IDs ; there are other trees in that list as well, but all trees represented in this dataset are in there.
DOI: 10.6084/m9.figshare.6281312.v1
title: Character Growth Index Test.Retest. 784 teens. 2014.xlsx

description: This study of 784 Midwest US seventh and eighth graders in 2014 was to develop and validate the Character Growth Index (CGI), a new, multidimensional assessment. CGI correlated with 13 subscales of the VIA Youth Survey at .851 (Spearman’s rho) and met eight rigorous validation criteria. 107 items. Only CGI items are in PDF due to VIA copyright.
DOI: 10.17605/osf.io/x8mn4
title: The Effect of Emotion and Gaze on the Emotion Perception of Neutral Facial Expressions

description: This project consists of data from participants for 2 experiments as part of a facial emotion perception study. Experiment 1 (Facial Expression Validation Code) has 28 participants, and experiment 2 (Affective Priming Code) has 25 participants. Experiment 1 was displayed using Opensesame, and experiment 2 was displayed using MATLAB.