cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23708337.v1
title: Understory bamboo removal impacts on woody seedlings regeneration in forest ecosystems: a meta-analysis

description: Tree seedling regeneration in forests is often hindered by the negative impact of dense understory bamboo competition. While localized studies have investigated the ecological effects of understory bamboo removal on tree seedlings, but a comprehensive analysis at a global scale is lacking. In this meta-analysis, data from 32 experimental studies were synthesized to assess the overall effect of understory bamboo removal on tree seedling regeneration and identify key influencing factors. Our findings demonstrated positive effects of understory bamboo removal on tree seedling survival, emergence, and height growth. However, we found the response of tree seedlings to bamboo removal varied depending on regeneration characteristics, forest types, and bamboo removal method. Specifically, understory bamboo removal increased the survival rate of deciduous seedlings but did no significantly affect survival rate of evergreen seedlings. Regarding regeneration stages, bamboo removal had a significant positive effect on the survival rate of saplings but not on seedlings. In terms of forest types, bamboo removal significantly increased the emergence density of seedlings in deciduous broadleaf forest, while it had a significant negative influence in evergreen forest and mixed evergreen-deciduous forest. Additionally, the method of bamboo removal was crucial, with seedlings in areas where bamboo was naturally removed showing more robust and favorable responses compared to those where bamboo removal was artificially or animally induced. Furthermore, we found that the duration of bamboo removal and environmental factors such as mean annual temperature, precipitation of seasonality, and soil pH strongly influenced the response ratios of tree seedling regeneration. Our findings provide valuable insights into the ecological implications of understory bamboo removal on tree seedlings regeneration and provide guidance for forest managers in their decision-making processes. These findings can assist forest managers in effectively managing understory bamboo, thereby promoting forest succession and biodiversity conservation.
DOI: 10.15151/esrf-es-1118655750
title: The Iberian cryoEM community BAG

description: The Iberian cryoEM BAG is a large consortium (&gt; 30 groups) composed of Portuguese and Spanish groups working in biologically relevant problems including disease related metabolic enzymes, antibiotic resistance, DNA replication and DNA maintenance, protein synthesis, virus structure and mechanisms, and macromolecular complexes involved in the control of key cellular processes like protein folding and degradation.
DOI: 10.18712/nsd-nsd0566-4-v2
title: Labour Force Survey 1983, 4th quarter, new estimation factor

description: SSB has conducted official quarterly labor force surveys (LFS) from Q1 1972. The survey aims to provide labor authorities and others familiar with the occupational structure of population and development over time. The surveys will provide the basis and statistical material for occupational forecasting and labor market research. In the LFS one respondent is interviewed for two consecutive quarters, then there's a break for two quarters and then the respondent is interviewed again for two consecutive quarters. The sample was approximately 10 to 11,000 respondents each quarter until the 1988. The  Labour Force Survey 1976 is the fifth full year with LFS. Originally it was intended that the LFS should be an analytical supplement to the monthly employment statistics that were based on the insurance fund membership files. The insurance fund-based statistics, however, fell away when health insurance was included in the National Insurance Scheme from 1 January 1971, the LFS has gradually evolved to become the main source of knowledge about the state of the labor market.

In 1975 SSB changed the selection plan for surveys, see respectively Art.37: On the use of random samples at the office for interview surveys, Statistics Norway (Steinar Tamsfoss) and SES 33: Principles and Methods of Statistics Norway samples (Ib Thomsen) Meanwhile, the estimation method for inflating national figures changed so that there are reasonable numbers for regions from the 1975 reorganization in 1975 led to interviews changing in how they were performed in the pools before and after. This meant, among other things a break from the Panel system used in the LFS.

By Labour Force Survey 1976, it was adopted a slightly modified questionnaire and we came back on the original six-quarter rotation schedule. The new questionnaire meant that people in the group and family workers temporarily absent from work were identified in a better way. This resulted in approximately 30 to 35,000 more were counted as employed. Group seekers without work income was also expanded to include involuntarily laid off. The questions of subordinates and employment in the original form was deleted

From Q1 1987 the estimation method (inflating the national figures) slightly changed, moreover, there was a minor adjustment to the definition of employment. To achieve comparability backwards in time was therefore developed new versions of LFS files back to 1980 From 1980 there are therefore two versions of the files, respectively, with the "old" and "new" estimation method. Old means that data are comparable to the original published figures for the period 1972-1987, new means of data for the period 1980-1987 which utilizes this estimation factor (weight) is comparable with the figures published after 1987

This file is based on the NEW estimation method.
DOI: 10.6084/m9.figshare.23614263.v3
title: An exposome atlas of human serum reveals risk of chronic diseases

description: Although adverse environmental exposures are considered to be a major cause to chronic diseases, current studies have provided limited knowledge on real-world chemical exposures and related risks. Here, we collected serum samples from 5696 healthy people and patients, including 12 chronic diseases in China, and completed serum biomonitoring containing 267 chemicals using gas and liquid chromatography-tandem mass spectrometry. 74 high-frequently detected exposures were used for exposure characterization and risk analysis. Results showed that region was the most critical factor influencing human exposure levels, followed by age. Hyperlipidemia was associated with the maximum number of exposures. Organochlorine pesticides and perfluoroalkyl substances were associated with multiple chronic diseases, and some of them exceed the exposure reference values. Mixture effect models showed significant risk effects of exposure on hyperlipidemia, metabolic syndrome and hyperuricemia. Overall, this study provided a comprehensive human serum exposure atlas and its disease risk, which could guide subsequent more in-depth cause-and-effect studies between environmental exposures and human health.
DOI: 10.12751/g-node.nbm9qr
title: Longitudinal MRI data (T2w and rs-fMRI) after cortical stroke and cathodal transcranial direct current stimulation (tDCS) in mice

description: Longitudinal T2-weighted MRI, rs-fMRI and behavorial data (baseline and up to 4 weeks after stroke) in the photothrombosis model and transcranial direct current stimulation (cathodal tDCS) in mice.
description: IsSupplementTo: Blaschke SJ, Vlachakis S, Pallast N, Walter HL, Volz LJ, Wiedermann D, Fink GR, Hoehn M, Aswendt M, Schroeter M, Rueger MA. Transcranial Direct Current Stimulation Reverses Stroke-Induced Network Alterations in Mice. Stroke. 2023 Jun 28. (https://doi.org/10.1161/STROKEAHA.123.042808)
DOI: 10.34740/kaggle/dsv/6159822
title: AutoXGB
DOI: 10.18419/darus-3551
title: Replication Data for: A screening of results on the decay length in concentrated electrolytes

description: This is the repository holding the inputs for atomistic Molecular Dynamics Simulations of nano-confined mica slabs as well as the outputs for cDFT calculations. Also, scripts for input generation and all analysis tools used are See the README file for more information.
DOI: 10.34740/kaggle/dsv/6159886
title: Github Bipartite graph dataset(developers,repos)
DOI: 10.34740/kaggle/dsv/6159888
title: Github Bipartite graph dataset(developers,repos)
DOI: 10.5281/zenodo.8162848
title: The Dangers of Using Cq to Quantify Nucleic Acid in Biological Samples: A Lesson From COVID-19 - supplementary data

description: Dataset in relation to Evans, Daniel, Cowen, Simon, Kammel, Martin, O'Sullivan, Denise M, Stewart, Graham, Grunert, Hans-Peter, Moran-Gilad, Jacob, Verwilt, Jasper, In, Jiwon, Vandesompele, Jo, Harris, Kathryn, Hong, Ki Ho, Storey, Nathaniel, Hingley-Wilson, Suzie, Dühring, Ulf, Bae, Young-Kyung, Foy, Carole A, Braybrook, Julian, Zeichhardt, Heinz, & Huggett, Jim F. (2021). The Dangers of Using Cq to Quantify Nucleic Acid in Biological Samples: A Lesson From COVID-19. Clinical Chemistry, 68(1), 153–162. https://doi.org/10.1093/clinchem/hvab219
description: This project (18HLT03 SEPTIMET) has received funding from the EMPIR programme co-financed by the Participating States and from the European Union's Horizon 2020 research and innovation programme
DOI: 10.5281/zenodo.8162847
title: The Dangers of Using Cq to Quantify Nucleic Acid in Biological Samples: A Lesson From COVID-19 - supplementary data

description: Dataset in relation to Evans, Daniel, Cowen, Simon, Kammel, Martin, O'Sullivan, Denise M, Stewart, Graham, Grunert, Hans-Peter, Moran-Gilad, Jacob, Verwilt, Jasper, In, Jiwon, Vandesompele, Jo, Harris, Kathryn, Hong, Ki Ho, Storey, Nathaniel, Hingley-Wilson, Suzie, Dühring, Ulf, Bae, Young-Kyung, Foy, Carole A, Braybrook, Julian, Zeichhardt, Heinz, & Huggett, Jim F. (2021). The Dangers of Using Cq to Quantify Nucleic Acid in Biological Samples: A Lesson From COVID-19. Clinical Chemistry, 68(1), 153–162. https://doi.org/10.1093/clinchem/hvab219
description: This project (18HLT03 SEPTIMET) has received funding from the EMPIR programme co-financed by the Participating States and from the European Union's Horizon 2020 research and innovation programme
DOI: 10.6084/m9.figshare.23708382
title: Metadatafile.csv

description: Approximately 7-10 fecal pellets from individual mice were collected prior to terminal analyses at week 52 post-therapy. Fecal pellets were aseptically collected and stored at -20 oC. Samples were shipped to Utah State University where sample processing and microbiota studies were performed<strong>. </strong>Briefly, isolated total community DNA was isolated from the fecal samples using a QIAGen QIAamp DNA stool mini kit according to the instructions provided by the manufacturer. Upon obtaining total DNAs, samples were sent to Idaho State University (ISU) Molecular Core Facility for Illumina MiSeq next generation sequencing (https://www.isu.edu/research/centers-and-institutes/molecular-research-core-facility/services/). Briefly, first stage PCR was performed to amplify the V3-V4 region of 16S rRNA from total DNA. Subsequently, the PCR products for each sample were cleaned using Ampure XP beads. Then, a second stage PCR was performed for Illumina indexing. Upon running Illumina MiSeq for the samples, the raw fastaq files were hosted at the site managed by Idaho State University and their sequencing facility to perform the bioinformatics analysis using Mothur software package and we received processed data files. These files were uploaded to microbiomeanalyst.ca for selected analyses using Mothur output files and SILVA taxonomy as the reference 16S rDNA database.
DOI: 10.6084/m9.figshare.23708382.v1
title: Metadatafile.csv

description: Approximately 7-10 fecal pellets from individual mice were collected prior to terminal analyses at week 52 post-therapy. Fecal pellets were aseptically collected and stored at -20 oC. Samples were shipped to Utah State University where sample processing and microbiota studies were performed<strong>. </strong>Briefly, isolated total community DNA was isolated from the fecal samples using a QIAGen QIAamp DNA stool mini kit according to the instructions provided by the manufacturer. Upon obtaining total DNAs, samples were sent to Idaho State University (ISU) Molecular Core Facility for Illumina MiSeq next generation sequencing (https://www.isu.edu/research/centers-and-institutes/molecular-research-core-facility/services/). Briefly, first stage PCR was performed to amplify the V3-V4 region of 16S rRNA from total DNA. Subsequently, the PCR products for each sample were cleaned using Ampure XP beads. Then, a second stage PCR was performed for Illumina indexing. Upon running Illumina MiSeq for the samples, the raw fastaq files were hosted at the site managed by Idaho State University and their sequencing facility to perform the bioinformatics analysis using Mothur software package and we received processed data files. These files were uploaded to microbiomeanalyst.ca for selected analyses using Mothur output files and SILVA taxonomy as the reference 16S rDNA database.
DOI: 10.6084/m9.figshare.23708427
title: Gene annotation for NCMD assembly

description: For annotating protein-coding genes, RNA samples were prepared and sequenced from 24 different tissues of the Nanchukmacdon individual which was used for whole genome sequencing. Using a combination of ab initio and homology-based prediction approaches with the RNA sequencing data, a total of 20,588 protein-coding genes with an average length of 47.06 Kbp were annotated in the NCMD assembly. Non-coding genes for diverse types of RNAs, including rRNA, snRNA, and miRNA, were annotated by using the Rfam database and Infernal (v.1.1.3). The tRNAscan-SE (v.2.0.5) and RNAmmer (v.1.2) were used to annotate non-coding genes for tRNA and rRNA, respectively.
DOI: 10.6084/m9.figshare.23708427.v1
title: Gene annotation for NCMD assembly

description: For annotating protein-coding genes, RNA samples were prepared and sequenced from 24 different tissues of the Nanchukmacdon individual which was used for whole genome sequencing. Using a combination of ab initio and homology-based prediction approaches with the RNA sequencing data, a total of 20,588 protein-coding genes with an average length of 47.06 Kbp were annotated in the NCMD assembly. Non-coding genes for diverse types of RNAs, including rRNA, snRNA, and miRNA, were annotated by using the Rfam database and Infernal (v.1.1.3). The tRNAscan-SE (v.2.0.5) and RNAmmer (v.1.2) were used to annotate non-coding genes for tRNA and rRNA, respectively.
DOI: 10.6084/m9.figshare.23697210.v1
title: Supplement to Assessing the evolution of SARS-CoV-2 lineages and the dynamic associations between nucleotide variations

description: Supplementary data to the published version of record and preprint of this article. This supplementary material has been kindly republished by the authors following an editorial office request to remove potential inidrect identifiers within the dataset.
DOI: 10.6084/m9.figshare.23697210
title: Supplement to Assessing the evolution of SARS-CoV-2 lineages and the dynamic associations between nucleotide variations

description: Supplementary data to the published version of record and preprint of this article. This supplementary material has been kindly republished by the authors following an editorial office request to remove potential inidrect identifiers within the dataset.
DOI: 10.6084/m9.figshare.23708352.v1
title: NCMD assembly

description: For genome assembly, we generated short and long reads using the DNA sample of an adult male of Nanchukmacdon. Then, we constructed a genome assembly using the sequencing reads with the reference-guided approach. The 80.14x raw PacBio subreads were assembled and polished to generate 1,942 high-quality contigs supported by at least 50 PacBio subreads. To generate a chromosome-level assembly, the high-quality polished contigs were then further assembled by an improved version of RACA that can utilize both the genome information of related species and diverse types of sequencing data. The assembly was used to build the final assembly after one more polishing step using short reads. The sequencing read data can be obtained at NCBI SRA under the project of PRJNA967127
DOI: 10.18712/nsd-nsd2925-v3
title: Social Inequality, 2019, Norwegian part of ISSP

description: This study was conducted on the basis of the research collaboration in "The International Social Survey Program" (ISSP). ISSP is an international organization with members in 45 countries that prepares and coordinates annual interview surveys in its member countries, mainly in the fields of political science and sociology. Themes for the surveys vary, but the same theme is repeated every few years so that it becomes possible to measure both changes in action patterns and attitudes over time, as well as differences between different countries and cultures. NSD - Norwegian Center for Research Data AS (NSD) became a member of ISSP in 1989 and has since been responsible for conducting the surveys in Norway. The ISSP "Social Inequality" has been implemented in 1992, 1999, and 2009.
DOI: 10.6084/m9.figshare.23614263
title: An exposome atlas of human serum reveals risk of chronic diseases

description: this is a temperary dataset
DOI: 10.6084/m9.figshare.23614263.v4
title: An exposome atlas of human serum reveals risk of chronic diseases

description: this is a temperary dataset
DOI: 10.6084/m9.figshare.23614263.v5
title: An exposome atlas of human serum reveals risk of chronic diseases

description: this is a temperary dataset
DOI: 10.6084/m9.figshare.22807238
title: SelfTargeting h5ad data encoded into 912 classes

description: filename is formated as : CellType_Repeat_Coding.h5ad <br> h5ad with event frequency stored in adata.X event description saved in adata.var meta data for each Guide-Target pair saved in adata.obs <br> To download and unzip the file copy the link address within terminal : wget --no-check-certificate LINK within terminal : mv 2 2.zip unzip 2.zip
DOI: 10.6084/m9.figshare.22807238.v5
title: SelfTargeting h5ad data encoded into 912 classes

description: filename is formated as : CellType_Repeat_Coding.h5ad <br> h5ad with event frequency stored in adata.X event description saved in adata.var meta data for each Guide-Target pair saved in adata.obs <br> To download and unzip the file copy the link address within terminal : wget --no-check-certificate LINK within terminal : mv 2 2.zip unzip 2.zip
DOI: 10.6084/m9.figshare.22807238.v4
title: SelfTargeting h5ad data encoded into 912 classes

description: filename is formated as : CellType_Repeat_Coding.h5ad <br> h5ad with event frequency stored in adata.X event description saved in adata.var meta data for each Guide-Target pair saved in adata.obs <br> To download and unzip the file copy the link address within terminal : wget --no-check-certificate LINK within terminal : mv 2 2.zip unzip 2.zip
DOI: 10.4121/ceb4d129-3e79-4c52-a3bf-69851f551fb3
title: Data underlying the publication: Spatial Parameters for Circular Construction Hubs

description: This dataset contains the results for a journal paper titled "Spatial Parameters for Circular Construction Hubs: Location Criteria for a Circular Built Environment". For this research, we reviewed policy documents and interviewed exports to identify the spatial parameters (or location requirements) for circular construction hubs, which are facilities that collect, store, and redistribute construction waste as secondary resources. The following files included document the research process and results:interview transcripts.docx - interview transcripts with experts, the color-coded highlights categorizing different types of spatial requirements.interview questions.docs - list of interview questions asked during the semi-structured interview.spatial params and analysis methods.xlsx - research results showing the spatial parameters and potential spatial analysis methods to identify future locations of circular construction hubs in the Netherlands.
DOI: 10.4121/ceb4d129-3e79-4c52-a3bf-69851f551fb3.v1
title: Data underlying the publication: Spatial Parameters for Circular Construction Hubs

description: This dataset contains the results for a journal paper titled "Spatial Parameters for Circular Construction Hubs: Location Criteria for a Circular Built Environment". For this research, we reviewed policy documents and interviewed exports to identify the spatial parameters (or location requirements) for circular construction hubs, which are facilities that collect, store, and redistribute construction waste as secondary resources. The following files included document the research process and results:interview transcripts.docx - interview transcripts with experts, the color-coded highlights categorizing different types of spatial requirements.interview questions.docs - list of interview questions asked during the semi-structured interview.spatial params and analysis methods.xlsx - research results showing the spatial parameters and potential spatial analysis methods to identify future locations of circular construction hubs in the Netherlands.
DOI: 10.4121/3b90736f-1052-41a8-a0d8-0d42cf744ee8
title: Data underlying the publication: The role of urban manufacturing for a circular economy in cities

description: This dataset contains the results of a paper publishing in the journal Sustainability titled "The role of urban manufacturing for a circular economy in cities", which conducted a literature review and expert interviews to identify the drivers and barriers for circular urban manufacturing. The results includes the following files:Interview transcripts.docx - Transcripts of interviews with 8 expertsInterviews summary and coding.xlsx - Summary and categorization of drivers and barriers mentioned during expert interviewsLCAs of urban manufacturing_summary.xlsx - Summary of results for literature review of LCA papers on localizing manufacturingLiterature summary and coding.xlsx - Summary and categorization of drivers and barriers mentioned in literature
DOI: 10.4121/3b90736f-1052-41a8-a0d8-0d42cf744ee8.v1
title: Data underlying the publication: The role of urban manufacturing for a circular economy in cities

description: This dataset contains the results of a paper publishing in the journal Sustainability titled "The role of urban manufacturing for a circular economy in cities", which conducted a literature review and expert interviews to identify the drivers and barriers for circular urban manufacturing. The results includes the following files:Interview transcripts.docx - Transcripts of interviews with 8 expertsInterviews summary and coding.xlsx - Summary and categorization of drivers and barriers mentioned during expert interviewsLCAs of urban manufacturing_summary.xlsx - Summary of results for literature review of LCA papers on localizing manufacturingLiterature summary and coding.xlsx - Summary and categorization of drivers and barriers mentioned in literature
DOI: 10.4121/1b980be2-410e-43e4-a769-e09e76d27a09
title: Data, code and results underlying the publication: Spatial clustering of waste reuse in a circular economy

description: This dataset contains data, code, and results for the academic paper analyzing the degree and scale of spatial clustering of waste reuse locations in the Netherlands using waste data from the Dutch Waste Registry (LMA). The paper is titled "Spatial clustering of waste reuse in a circular economy: A spatial autocorrelation analysis on locations of waste reuse in the Netherlands using global and local Moran’s I". This dataset is a zipfile containing the following:Results - folder containing results for spatial analysis of waste reuse locations in the Netherlands, including spatial clustering (global morans I), hotspot analysis (local moran's I).wasteReuseLocations - folder containing shp files of waste reuse locations in NL, aggregated at 10x10km spatial resolution.code - folder containing .py and .ipynb files used to conduct spatial clustering analysis.supplementary document.docx - document providing extra information (including links) for methodology and results of paper.