cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26991862
title: Additional file 11 of A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes

description: Additional file 11. Newick file of the species tree used in our OrthoFinder analysis.
DOI: 10.6084/m9.figshare.26991862.v1
title: Additional file 11 of A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes

description: Additional file 11. Newick file of the species tree used in our OrthoFinder analysis.
DOI: 10.6084/m9.figshare.26991868
title: Additional file 1 of Signatures of local adaptation to current and future climate in phenology-related genes in natural populations of Quercus robur

description: Additional file 1.
DOI: 10.6084/m9.figshare.26991868.v1
title: Additional file 1 of Signatures of local adaptation to current and future climate in phenology-related genes in natural populations of Quercus robur

description: Additional file 1.
DOI: 10.6084/m9.figshare.26991883
title: Additional file 2 of Application of cold argon plasma on germination, root length, and decontamination of soybean cultivars

description: Additional file 2: Supplementary data of  Table 3. Effect of cold plasma on seed germination properties in soybean for Germination index.
DOI: 10.6084/m9.figshare.26991880
title: Additional file 1 of Application of cold argon plasma on germination, root length, and decontamination of soybean cultivars

description: Additional file 1: Supplementary data of Table 2. ANOVA for seed germination and seedling growth characteristics in soybean (a) Germination percentage (b) Germination Rate (c) Germination index (d) Root length (e) Seedling length (f) Seedling dry weight.
DOI: 10.6084/m9.figshare.26991880.v1
title: Additional file 1 of Application of cold argon plasma on germination, root length, and decontamination of soybean cultivars

description: Additional file 1: Supplementary data of Table 2. ANOVA for seed germination and seedling growth characteristics in soybean (a) Germination percentage (b) Germination Rate (c) Germination index (d) Root length (e) Seedling length (f) Seedling dry weight.
DOI: 10.6084/m9.figshare.26991883.v1
title: Additional file 2 of Application of cold argon plasma on germination, root length, and decontamination of soybean cultivars

description: Additional file 2: Supplementary data of  Table 3. Effect of cold plasma on seed germination properties in soybean for Germination index.
DOI: 10.6084/m9.figshare.26991886
title: Additional file 3 of Application of cold argon plasma on germination, root length, and decontamination of soybean cultivars

description: Additional file 3: Supplementary data of  Table 4. Effect of cold plasma on seed germination properties in soybean for Root length (cm).
DOI: 10.6084/m9.figshare.26991886.v1
title: Additional file 3 of Application of cold argon plasma on germination, root length, and decontamination of soybean cultivars

description: Additional file 3: Supplementary data of  Table 4. Effect of cold plasma on seed germination properties in soybean for Root length (cm).
DOI: 10.6084/m9.figshare.26991889
title: Additional file 4 of Application of cold argon plasma on germination, root length, and decontamination of soybean cultivars

description: Additional file 4: Table 5. ANOVA for Antioxidant enzymes activity (a) catalase enzyme (CAT), (b) superoxide dismutase (SOD), (c) ascorbate peroxidase (APX).
DOI: 10.6084/m9.figshare.26991892
title: Additional file 5 of Application of cold argon plasma on germination, root length, and decontamination of soybean cultivars

description: Additional file 5: Supplementary data of  Table 6. Effect of cold plasma on seed germination properties in soybean for APX activity  (μM g-1 FW min-1).
DOI: 10.6084/m9.figshare.26991889.v1
title: Additional file 4 of Application of cold argon plasma on germination, root length, and decontamination of soybean cultivars

description: Additional file 4: Table 5. ANOVA for Antioxidant enzymes activity (a) catalase enzyme (CAT), (b) superoxide dismutase (SOD), (c) ascorbate peroxidase (APX).
DOI: 10.6084/m9.figshare.26991892.v1
title: Additional file 5 of Application of cold argon plasma on germination, root length, and decontamination of soybean cultivars

description: Additional file 5: Supplementary data of  Table 6. Effect of cold plasma on seed germination properties in soybean for APX activity  (μM g-1 FW min-1).
DOI: 10.6084/m9.figshare.26991910
title: Additional file 1 of Microalgae biofuels: illuminating the path to a sustainable future amidst challenges and opportunities

description: Additional file 1: Table S1. Fatty acids composition of green algae (percentage of total fatty acids).
DOI: 10.6084/m9.figshare.26991910.v1
title: Additional file 1 of Microalgae biofuels: illuminating the path to a sustainable future amidst challenges and opportunities

description: Additional file 1: Table S1. Fatty acids composition of green algae (percentage of total fatty acids).
DOI: 10.6084/m9.figshare.26991916
title: Additional file 1 of Augmenting MEK inhibitor efficacy in BRAF wild-type melanoma: synergistic effects of disulfiram combination therapy

description: Additional file 1. Supplementary Methods, Supplementary Figures, Supplementary Movies, Supplementary Tables.
DOI: 10.6084/m9.figshare.26991916.v1
title: Additional file 1 of Augmenting MEK inhibitor efficacy in BRAF wild-type melanoma: synergistic effects of disulfiram combination therapy

description: Additional file 1. Supplementary Methods, Supplementary Figures, Supplementary Movies, Supplementary Tables.
DOI: 10.6084/m9.figshare.26991928
title: Additional file 2 of Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions

description: Additional file 2: Table S1. Information on 146 representative genomes from 13 orders of Euryarchaeota and 46 outgroup genomes from phylum Crenarchaeota.
DOI: 10.6084/m9.figshare.26991928.v1
title: Additional file 2 of Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions

description: Additional file 2: Table S1. Information on 146 representative genomes from 13 orders of Euryarchaeota and 46 outgroup genomes from phylum Crenarchaeota.
DOI: 10.6084/m9.figshare.26991931.v1
title: Additional file 3 of Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions

description: Additional file 3: Table S2. Information on top 31 significant differential genes defined by random forest classifier.
DOI: 10.6084/m9.figshare.26991934.v1
title: Additional file 4 of Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions

description: Additional file 4: Table S3. Information on 243 Methanomassiliicoccales genomes, five outgroup taxa from the order Thermoplasmatales, and 17 high-quality archaeal MAGs recovered from the LME and HME sheep included in this study.
DOI: 10.6084/m9.figshare.26991931
title: Additional file 3 of Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions

description: Additional file 3: Table S2. Information on top 31 significant differential genes defined by random forest classifier.
DOI: 10.6084/m9.figshare.26991934
title: Additional file 4 of Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions

description: Additional file 4: Table S3. Information on 243 Methanomassiliicoccales genomes, five outgroup taxa from the order Thermoplasmatales, and 17 high-quality archaeal MAGs recovered from the LME and HME sheep included in this study.
DOI: 10.6084/m9.figshare.26991937
title: Additional file 5 of Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions

description: Additional file 5: Table S4. Information on 12,093 orthologous genes inferred from 243 Methanomassiliicoccales genomes.
DOI: 10.6084/m9.figshare.26991937.v1
title: Additional file 5 of Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions

description: Additional file 5: Table S4. Information on 12,093 orthologous genes inferred from 243 Methanomassiliicoccales genomes.
DOI: 10.6084/m9.figshare.26991940.v1
title: Additional file 6 of Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions

description: Additional file 6: Table S5. Information on 1656 orthologous genes from the common ancestor of Methanomassiliicoccales.
DOI: 10.6084/m9.figshare.26991940
title: Additional file 6 of Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions

description: Additional file 6: Table S5. Information on 1656 orthologous genes from the common ancestor of Methanomassiliicoccales.
DOI: 10.6084/m9.figshare.26991943
title: Additional file 7 of Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions

description: Additional file 7: Table S6. Information on 968 gained genes specific to 22 genera.
DOI: 10.6084/m9.figshare.26991943.v1
title: Additional file 7 of Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions

description: Additional file 7: Table S6. Information on 968 gained genes specific to 22 genera.
DOI: 10.6084/m9.figshare.26991946
title: Additional file 8 of Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions

description: Additional file 8: Table S7. The central metabolic pathways shared by Methanomassiliicoccales.
DOI: 10.6084/m9.figshare.26991946.v1
title: Additional file 8 of Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions

description: Additional file 8: Table S7. The central metabolic pathways shared by Methanomassiliicoccales.
DOI: 10.6084/m9.figshare.26991949
title: Additional file 9 of Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions

description: Additional file 9: Table S8. Comparisons of genomic properties between LGM-RCC1 and LGM-DZ1.
DOI: 10.6084/m9.figshare.26991949.v1
title: Additional file 9 of Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions

description: Additional file 9: Table S8. Comparisons of genomic properties between LGM-RCC1 and LGM-DZ1.
DOI: 10.6084/m9.figshare.26991952
title: Additional file 10 of Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions

description: Additional file 10: Table S9. The expression profiles of each genome in the LME and HME sheep.
DOI: 10.6084/m9.figshare.26991952.v1
title: Additional file 10 of Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions

description: Additional file 10: Table S9. The expression profiles of each genome in the LME and HME sheep.
DOI: 10.6084/m9.figshare.26991967
title: Additional file 3 of Evaluating density-weighted connectivity of black bears (Ursus americanus) in Glacier National Park with spatial capture–recapture models

description: Additional file 3. R code to calculate density-weighted connectivity.
DOI: 10.6084/m9.figshare.26991967.v1
title: Additional file 3 of Evaluating density-weighted connectivity of black bears (Ursus americanus) in Glacier National Park with spatial capture–recapture models

description: Additional file 3. R code to calculate density-weighted connectivity.
DOI: 10.6084/m9.figshare.26991991
title: Additional file 5 of New insights into mesoderm and endoderm development, and the nature of the onychophoran blastopore

description: Additional file 5: Tbox Nexus File.
DOI: 10.6084/m9.figshare.26991991.v1
title: Additional file 5 of New insights into mesoderm and endoderm development, and the nature of the onychophoran blastopore

description: Additional file 5: Tbox Nexus File.
DOI: 10.6084/m9.figshare.26991994
title: Additional file 6 of New insights into mesoderm and endoderm development, and the nature of the onychophoran blastopore

description: Additional file 6: Tbox Nexus File (arthropod tree).
DOI: 10.6084/m9.figshare.26991994.v1
title: Additional file 6 of New insights into mesoderm and endoderm development, and the nature of the onychophoran blastopore

description: Additional file 6: Tbox Nexus File (arthropod tree).
DOI: 10.6084/m9.figshare.26991997
title: Additional file 7 of New insights into mesoderm and endoderm development, and the nature of the onychophoran blastopore

description: Additional file 7: Gene identifiers and primers.
DOI: 10.6084/m9.figshare.26991997.v1
title: Additional file 7 of New insights into mesoderm and endoderm development, and the nature of the onychophoran blastopore

description: Additional file 7: Gene identifiers and primers.
DOI: 10.6084/m9.figshare.26992000
title: Additional file 8 of New insights into mesoderm and endoderm development, and the nature of the onychophoran blastopore

description: Additional file 8: Mox Nexus File.
DOI: 10.6084/m9.figshare.26992000.v1
title: Additional file 8 of New insights into mesoderm and endoderm development, and the nature of the onychophoran blastopore

description: Additional file 8: Mox Nexus File.
DOI: 10.6084/m9.figshare.26992003
title: Additional file 9 of New insights into mesoderm and endoderm development, and the nature of the onychophoran blastopore

description: Additional file 9: Blimp Nexus File.
DOI: 10.6084/m9.figshare.26992003.v1
title: Additional file 9 of New insights into mesoderm and endoderm development, and the nature of the onychophoran blastopore

description: Additional file 9: Blimp Nexus File.
DOI: 10.6084/m9.figshare.26992018
title: Additional file 2 of Neofunctionalization driven by positive selection led to the retention of the loqs2 gene encoding an Aedes specific dsRNA binding protein

description: Additional file 2: Table S1. SRA identifiers of the libraries used in this study. Table S2. Metrics of divergence and McDonald-Kreitman test (MKT) for loqs, loqs2, dicer1 and dicer2 from an Ae. aegypti population from a forest in Senegal compared to Ae. mascarensis.
DOI: 10.6084/m9.figshare.26992018.v1
title: Additional file 2 of Neofunctionalization driven by positive selection led to the retention of the loqs2 gene encoding an Aedes specific dsRNA binding protein

description: Additional file 2: Table S1. SRA identifiers of the libraries used in this study. Table S2. Metrics of divergence and McDonald-Kreitman test (MKT) for loqs, loqs2, dicer1 and dicer2 from an Ae. aegypti population from a forest in Senegal compared to Ae. mascarensis.
DOI: 10.6084/m9.figshare.26992021
title: Additional file 3 of Neofunctionalization driven by positive selection led to the retention of the loqs2 gene encoding an Aedes specific dsRNA binding protein

description: Additional file 3: Zip compressed file containing plasmid maps in Genbank format. The following files are available: Plasmids used for piggyBac mediated transgenesis in mosquitoes: Files (879 GG PUb-3xFLAG_loqs2_Sv40, 3xP3-eGFP_SV40.gb) and (992 GG OpIE2-3xFLAG_Loqs2_Sv40, PUb-dsRED_Sv40.gb). Plasmids used for transfection in vitro: (993 GG PUb-3xFLAG_Loqs2_Sv40, opIE2-Puro_Sv40.gb), (1000 GG PUb-V5_r2d2_Sv40, opIE2-Puro_Sv40.gb), (1001 GG PUb-V5_LoqsPA_Sv40, opIE2-Puro_Sv40.gb), (1002 GG PUb-V5_LoqsPB_Sv40, opIE2-Puro_Sv40.gb).
DOI: 10.6084/m9.figshare.26992021.v1
title: Additional file 3 of Neofunctionalization driven by positive selection led to the retention of the loqs2 gene encoding an Aedes specific dsRNA binding protein

description: Additional file 3: Zip compressed file containing plasmid maps in Genbank format. The following files are available: Plasmids used for piggyBac mediated transgenesis in mosquitoes: Files (879 GG PUb-3xFLAG_loqs2_Sv40, 3xP3-eGFP_SV40.gb) and (992 GG OpIE2-3xFLAG_Loqs2_Sv40, PUb-dsRED_Sv40.gb). Plasmids used for transfection in vitro: (993 GG PUb-3xFLAG_Loqs2_Sv40, opIE2-Puro_Sv40.gb), (1000 GG PUb-V5_r2d2_Sv40, opIE2-Puro_Sv40.gb), (1001 GG PUb-V5_LoqsPA_Sv40, opIE2-Puro_Sv40.gb), (1002 GG PUb-V5_LoqsPB_Sv40, opIE2-Puro_Sv40.gb).
DOI: 10.6084/m9.figshare.26990710
title: <b><i>Muntiacus nigripes</i></b>

description: The Hainan muntjac (<i>Muntiacus nigripes</i>) is a wild animal endemic to Hainan, China.In this study, we successfully assembled the Hainan muntjac haplotype genome at the chromosome level using Pacbio long read and long sequencing technologies and Hi-C data. The final assembly size was 2.66 Gb, with allele and scaffold N50 values of 29.27 and 700.27 Mb, respectively, and we scaffolded the genome sequence onto three chromosomes. The genome contains a total of 21,451 genes and 10,056 gene families.
DOI: 10.6084/m9.figshare.26990710.v1
title: <b><i>Muntiacus nigripes</i></b>

description: The Hainan muntjac (<i>Muntiacus nigripes</i>) is a wild animal endemic to Hainan, China.In this study, we successfully assembled the Hainan muntjac haplotype genome at the chromosome level using Pacbio long read and long sequencing technologies and Hi-C data. The final assembly size was 2.66 Gb, with allele and scaffold N50 values of 29.27 and 700.27 Mb, respectively, and we scaffolded the genome sequence onto three chromosomes. The genome contains a total of 21,451 genes and 10,056 gene families.
DOI: 10.6084/m9.figshare.26992027
title: Additional file 2 of Mitochondrial genomes revisited: why do different lineages retain different genes?

description: Additional file 2. Patterns of gene distribution across mitochondrial and nuclear genomes of the reference species.
DOI: 10.6084/m9.figshare.26992027.v1
title: Additional file 2 of Mitochondrial genomes revisited: why do different lineages retain different genes?

description: Additional file 2. Patterns of gene distribution across mitochondrial and nuclear genomes of the reference species.
DOI: 10.6084/m9.figshare.26992030
title: Additional file 3 of Mitochondrial genomes revisited: why do different lineages retain different genes?

description: Additional file 3. Bacterial reference dataset used in this study.
DOI: 10.6084/m9.figshare.26992030.v1
title: Additional file 3 of Mitochondrial genomes revisited: why do different lineages retain different genes?

description: Additional file 3. Bacterial reference dataset used in this study.
DOI: 10.6084/m9.figshare.26992039
title: Additional file 2 of The chromosome-scale genome assembly for the West Nile vector Culex quinquefasciatus uncovers patterns of genome evolution in mosquitoes

description: Additional file 2: Table S1. A list of the BAC clones mapped by FISH to the chromosomes of Culex quinquefasciatus. Table S2. Genome Resequencing Sample Metadata. Table S3. Odorant Receptor Annotation Details. Table S4. Novel odorant binding proteins and their subfamily/group classifications in Culex quinquefasciatus. Table S5. Chemosensory Gene Expression Sample Metadata. Table S6. Statistics related to TrioCanu separation of the maternal and paternal reads. Table S7. Assembly statistics through the process steps. Table S8. Hi-C Statistics. Table S9. QC and mapping information on the male and female Illumina reads used for CQ analysis. Table S10. Log Transformed FKPM Chemosensory Gene Expression.
DOI: 10.6084/m9.figshare.26992039.v1
title: Additional file 2 of The chromosome-scale genome assembly for the West Nile vector Culex quinquefasciatus uncovers patterns of genome evolution in mosquitoes

description: Additional file 2: Table S1. A list of the BAC clones mapped by FISH to the chromosomes of Culex quinquefasciatus. Table S2. Genome Resequencing Sample Metadata. Table S3. Odorant Receptor Annotation Details. Table S4. Novel odorant binding proteins and their subfamily/group classifications in Culex quinquefasciatus. Table S5. Chemosensory Gene Expression Sample Metadata. Table S6. Statistics related to TrioCanu separation of the maternal and paternal reads. Table S7. Assembly statistics through the process steps. Table S8. Hi-C Statistics. Table S9. QC and mapping information on the male and female Illumina reads used for CQ analysis. Table S10. Log Transformed FKPM Chemosensory Gene Expression.
DOI: 10.6084/m9.figshare.26992042
title: Additional file 3 of The chromosome-scale genome assembly for the West Nile vector Culex quinquefasciatus uncovers patterns of genome evolution in mosquitoes

description: Additional file 3. Odorant Receptor coding sequences from Culex quinquefasciatus.
DOI: 10.6084/m9.figshare.26992042.v1
title: Additional file 3 of The chromosome-scale genome assembly for the West Nile vector Culex quinquefasciatus uncovers patterns of genome evolution in mosquitoes

description: Additional file 3. Odorant Receptor coding sequences from Culex quinquefasciatus.
DOI: 10.6084/m9.figshare.26992045
title: Additional file 4 of The chromosome-scale genome assembly for the West Nile vector Culex quinquefasciatus uncovers patterns of genome evolution in mosquitoes

description: Additional file 4. Odorant Receptor proteins from Culex quinquefasciatus.
DOI: 10.6084/m9.figshare.26992045.v1
title: Additional file 4 of The chromosome-scale genome assembly for the West Nile vector Culex quinquefasciatus uncovers patterns of genome evolution in mosquitoes

description: Additional file 4. Odorant Receptor proteins from Culex quinquefasciatus.
DOI: 10.6084/m9.figshare.26992048
title: Additional file 5 of The chromosome-scale genome assembly for the West Nile vector Culex quinquefasciatus uncovers patterns of genome evolution in mosquitoes

description: Additional file 5. Odorant Receptor and Odorant Binding Protein Annotations.
DOI: 10.6084/m9.figshare.26992048.v1
title: Additional file 5 of The chromosome-scale genome assembly for the West Nile vector Culex quinquefasciatus uncovers patterns of genome evolution in mosquitoes

description: Additional file 5. Odorant Receptor and Odorant Binding Protein Annotations.