cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11521920
title: Circulation of <i>M. tuberculosis</i> Beijing genotype in Latin America and the Caribbean

description: Lineage 2 (East Asian), which includes the Beijing genotype, is one of the most prevalent lineages of <i>Mycobacterium tuberculosis</i> (Mtb) throughout the world. The Beijing family is associated to hypervirulence and drug-resistant tuberculosis. The study of this genotype’s circulation in Latin America is crucial for achieving total control of TB, the goal established by the World Health Organization, for the American sub-continent, before 2035. In this sense, the present work presents an overview of the status of the Beijing genotype for this region, with a bibliographical review, and data analysis of MIRU-VNTRs for available Beijing isolates. Certain countries present a prevalent trend of &lt;5%, suggesting low transmissibility for the region, with the exception of Cuba (17.2%), Perú (16%) and Colombia (5%). Minimum Spanning Tree analysis, obtained from MIRU-VNTR data, shows distribution of specific clonal complex strains in each country. From this data, in most countries, we found that molecular epidemiology has not been a tool used for the control of TB, suggesting that the Beijing genotype may be underestimated in Latin America. It is recommended that countries with the highest incidence of the Beijing genotype use effective control strategies and increased care, as a requirement for public health systems.
DOI: 10.6084/m9.figshare.11521920.v1
title: Circulation of <i>M. tuberculosis</i> Beijing genotype in Latin America and the Caribbean

description: Lineage 2 (East Asian), which includes the Beijing genotype, is one of the most prevalent lineages of <i>Mycobacterium tuberculosis</i> (Mtb) throughout the world. The Beijing family is associated to hypervirulence and drug-resistant tuberculosis. The study of this genotype’s circulation in Latin America is crucial for achieving total control of TB, the goal established by the World Health Organization, for the American sub-continent, before 2035. In this sense, the present work presents an overview of the status of the Beijing genotype for this region, with a bibliographical review, and data analysis of MIRU-VNTRs for available Beijing isolates. Certain countries present a prevalent trend of &lt;5%, suggesting low transmissibility for the region, with the exception of Cuba (17.2%), Perú (16%) and Colombia (5%). Minimum Spanning Tree analysis, obtained from MIRU-VNTR data, shows distribution of specific clonal complex strains in each country. From this data, in most countries, we found that molecular epidemiology has not been a tool used for the control of TB, suggesting that the Beijing genotype may be underestimated in Latin America. It is recommended that countries with the highest incidence of the Beijing genotype use effective control strategies and increased care, as a requirement for public health systems.
DOI: 10.6084/m9.figshare.11521890
title: Data Sharing Behaviours of Health and Medical Researchers
DOI: 10.25375/uct.11521887
title: Investigating the effects of environmental variables on martial eagle breeding performance in the Kruger National Park - MSC Data.

description: Within South Africa martial eagles reporting rates have decreased by almost 60% over the last 2 decades. Similar declines have also been reported within Kruger National Park (KNP), which is regarded as a stronghold for this species. Declines within KNP have been attributed to the low productivity rates. As apex predators, marital eagles are considered to be good indicators of ecosystem health, being sensitive to the cumulative effects of disturbance down the food chain. Changes in the breeding performance of martial eagles may therefore indicate broader environmental change within the ecosystem. In this study, we aim to explore which environmental variables (e.g. climate, land cover, tree cover, fire and elephant abundance) within each territory correlated with martial eagle breeding performance in the hope that we may better understand which variables affect martial eagles breeding performance and whether these may have changed over time to cause the low levels of fecundity presently seen within KNP. We found that breeding productivity (young per territorial pair) was positively influenced by higher precipitation and Normalized Difference Vegetation Index (NDVI) and negatively impacted by high temperatures during the previous year. Breeding rate (breeding attempt per territorial pair) appeared to be negatively influenced by higher tree cover within 6km of the nest site. Nesting success (outcome of a breeding attempt) was correlated with higher NDVI and lower relative levels of precipitation during the previous year. Using longer term climatic data and the relationship between climate in the previous year and productivity, (the variable which directly relates to annual fecundity), we hindcast the predicted productivity over the last 3 decades (2018-1986) to explore whether change in climate conditions (precipitation, temperature and NDVI) might reveal declines in productivity. No such declines were predicted, thus, our results do not explain why productivity has declined within KNP.
DOI: 10.6084/m9.figshare.11521878
title: test

description: 1dfsdf
DOI: 10.6084/m9.figshare.11521872
title: Supporting Data for 2019JB018878

description: Supporting Data for 2019JB018878
DOI: 10.6084/m9.figshare.11521872.v1
title: Supporting Data for 2019JB018878

description: Supporting Data for 2019JB018878
DOI: 10.6084/m9.figshare.11521878.v1
title: 11.xls

description: 1dfsdf
DOI: 10.6084/m9.figshare.11521878.v3
title: test

description: 1dfsdf
DOI: 10.6084/m9.figshare.11521878.v2
title: 11.xls

description: 1dfsdf
DOI: 10.6084/m9.figshare.11520552
title: Pre-processed data - Git Repo - HSM

description: Pre-processed data associated with the git repository - https://github.com/aqlaboratory/hsm. This repo supports the following publication.<br><br><b>Reference:</b>Cunningham JM, Koytiger G, Sorger PK, AlQuraishi M. "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."<i> Nature Methods</i> (2020).
DOI: 10.6084/m9.figshare.11520318
title: JGR data.rar

description: ...................2131213
DOI: 10.6084/m9.figshare.11520318.v2
title: JGR data.rar

description: ...................2131213
DOI: 10.6084/m9.figshare.11520318.v1
title: JGR data.rar

description: cyclic data
DOI: 10.6084/m9.figshare.11520297
title: Training Data - Peptide-Binding Domain-Peptide Interactions

description: Data used to train domain-peptide interactions.<br><b>Data Format</b>Each file describes a specific class of domains. The format for these files are csv files with five columns:<i><br></i><i>Domain UniProt ID,Domain Sequence,Peptidic Sequence,Bound</i><br>Data are de-duplicated (i.e. duplicate interactions are reduced to one) and de-conflicted (i.e. conflicting interactions are removed).<br><br><b>Reference:</b>Cunningham JM, Koytiger G, Sorger PK, AlQuraishi M. "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."<i> Nature Methods</i> (2020).
DOI: 10.6084/m9.figshare.11516583
title: 233333

description: tttt
DOI: 10.6084/m9.figshare.11516676
title: MultiScaleBuilding_Dataset.zip

description: MultiScaleBuilding Dataset
DOI: 10.6084/m9.figshare.11516676.v1
title: MultiScaleBuilding_Dataset.zip

description: MultiScaleBuilding Dataset
DOI: 10.6084/m9.figshare.11516583.v1
title: 1.xls

description: ttttest
DOI: 10.6084/m9.figshare.11516583.v2
title: tttt

description: ttttest
DOI: 10.6084/m9.figshare.11516583.v3
title: tttt

description: ttttest
DOI: 10.6084/m9.figshare.11516583.v4
title: SCs

description: tttt
DOI: 10.6084/m9.figshare.11516448
title: PROCESO PRÁCTICAS RÉGIMEN 2013

description: Describir las actividades que son parte de las prácticas pre profesionales.
DOI: 10.6084/m9.figshare.11516583.v6
title: 233333

description: tttt
DOI: 10.6084/m9.figshare.11516448.v1
title: LEVAN. INF PRÁCTICAS RÉGIMEN 2013

description: @page { margin: 2cm } p { margin-bottom: 0.25cm; direction: ltr; line-height: 115%; text-align: left; orphans: 2; widows: 2 } Describir las actividades que son parte de las prácticas pre profesionales.
DOI: 10.6084/m9.figshare.11516583.v5
title: SCs

description: tttt
DOI: 10.6084/m9.figshare.11516442
title: PROCESO TITULACIÓN ESPECIAL

description: Proceso de Titulación Especial en la Universidad Nacional de Loja
DOI: 10.6084/m9.figshare.11516445
title: PROCESO TITULACIÓN REGULAR

description: Proceso de Matricula Regular en la Universidad Nacional de Loja
DOI: 10.6084/m9.figshare.11516442.v1
title: PROCESO TITULACIÓN ESPECIAL

description: Proceso de Titulación Especial en la Universidad Nacional de Loja
DOI: 10.6084/m9.figshare.11516445.v1
title: PROCESO TITULACIÓN REGULAR

description: Proceso de Matricula Regular en la Universidad Nacional de Loja
DOI: 10.6084/m9.figshare.11516433
title: PROCESO MATRICULA 1ER CICLO

description: Proceso de Matrícula a Primer Ciclo en la Universidad Nacional de Loja
DOI: 10.6084/m9.figshare.11516430
title: PROCESO HOMOLOGACIÓN

description: Proceso de Homologación en la Universidad Nacional de Loja
DOI: 10.6084/m9.figshare.11516430.v1
title: PROCESO HOMOLOGACIÓN

description: Proceso de Homologación en la Universidad Nacional de Loja
DOI: 10.6084/m9.figshare.11516433.v1
title: PROCESO MATRICULA 1ER CICLO

description: Proceso de Matrícula a Primer Ciclo en la Universidad Nacional de Loja
DOI: 10.6084/m9.figshare.11516427
title: PROCESO PRACTICAS RÉGIMEN 2009

description: Proceso de Prácticas Preprofesionales régimen 2009 en la Universidad Nacional de Loja
DOI: 10.6084/m9.figshare.11515920
title: Proteome database of Bacillus licheniformis ATCC 14580

description: <i>Bacillus licheniformis</i> is a Gram-positive bacterium commonly found in soil. This work sought to present the proteome repertoire of the organism in the form of an Excel file. Using an in-house MATLAB proteome analysis software, the UniProt proteome of <i>B. licheniformis </i>ATCC 14580 was parsed and a database comprising protein name, amino acid sequence, number of residues, molecular weight of protein and nucleotide sequence of protein was built. Overall, this proteome database should find use in a variety of basic and applied microbiology research settings such as molecular cloning for the heterologous expression of useful genes in other biotechnological host such as <i>Escherichia coli</i>.<br><br>
DOI: 10.6084/m9.figshare.11516385
title: PROCESO MATRICULA REGULAR

description: Proceso de Matriculación en la Universidad Nacional de Loja
DOI: 10.6084/m9.figshare.11516427.v1
title: PROCESO PRACTICAS RÉGIMEN 2009

description: Proceso de Prácticas Preprofesionales régimen 2009 en la Universidad Nacional de Loja
DOI: 10.6084/m9.figshare.11516385.v1
title: PROCESO MATRICULA REGULAR

description: Proceso de Matriculación en la Universidad Nacional de Loja
DOI: 10.6084/m9.figshare.11515902
title: Proteome database of Bacillus megaterium ATCC 12872

description: Endospore forming <i>Bacillus megaterium</i> is a Gram-positive bacterium that previously was the model organism of choice prior to the development and ascendency of <i>Bacillus subtilis</i>. Larger than the typical bacterium, <i>B. megaterium</i> cells occur in pairs or chains, where each cell is attached to another through polysaccharides on the cell wall. This work presents the proteome repertoire of this fascinating bacterium. Using an in-house MATLAB proteome analysis software, this work parses the UniProt proteome file of <i>B. megaterium</i> ATCC 12872. The resulting database comprises protein name, amino acid sequence, number of residues, molecular weight, and nucleotide sequence, and should find use in a wide variety of biology and biotechnology applications that pertain to understanding basic biology of the species, or for informing selection of genes for molecular cloning experiments.<br><br>
DOI: 10.6084/m9.figshare.11515902.v1
title: Proteome database of Bacillus megaterium ATCC 12872

description: Endospore forming <i>Bacillus megaterium</i> is a Gram-positive bacterium that previously was the model organism of choice prior to the development and ascendency of <i>Bacillus subtilis</i>. Larger than the typical bacterium, <i>B. megaterium</i> cells occur in pairs or chains, where each cell is attached to another through polysaccharides on the cell wall. This work presents the proteome repertoire of this fascinating bacterium. Using an in-house MATLAB proteome analysis software, this work parses the UniProt proteome file of <i>B. megaterium</i> ATCC 12872. The resulting database comprises protein name, amino acid sequence, number of residues, molecular weight, and nucleotide sequence, and should find use in a wide variety of biology and biotechnology applications that pertain to understanding basic biology of the species, or for informing selection of genes for molecular cloning experiments.<br><br>
DOI: 10.6084/m9.figshare.11515632
title: D_TvsB_T.DEG.xls

description: <br>
DOI: 10.6084/m9.figshare.11515632.v1
title: D_TvsB_T.DEG.xls

description: Dexamethasone treated chick thymus transcriptome sequencing data
DOI: 10.6084/m9.figshare.11515608
title: raw-data of the research entitled “Application of direct current electric field on improving homogeneity of cementation by biogrouting”

description: The files are the raw-data of the research entitled “Application of direct current electric field on improving homogeneity of cementation by biogrouting”
DOI: 10.6084/m9.figshare.11515608.v1
title: raw-data of the research entitled “Application of direct current electric field on improving homogeneity of cementation by biogrouting”

description: The files are the raw-data of the research entitled “Application of direct current electric field on improving homogeneity of cementation by biogrouting”
DOI: 10.6084/m9.figshare.11515263
title: dataset_EOL.mat

description: This is a subset of training sample, and this subset contains 60,000 training samples and 10,000 test samples. The training sample set is generated based on the images of the ILSVRC2012 validation image set, which contains a total of 50,000 high-quality natural images. For each image (converted into grayscale space at first), Gaussian filtering is used to obtain five versions with different blurred levels. In this paper, the size of the Gaussian filter used is 7*7, and the standard deviation is 2. The source image and the corresponding five blurred versions are given a corresponding image label 6, 5, 4, 3, 2, 1 respectively. When the label value of the first image is greater than the second image, the label values of these sample data are set to 1. Conversely, when the label value of the first image is smaller than the second image, the label values of these sample data are set to 0. For source images and five different blurred versions, the windows with a size of 16 * 16 are randomly select from these images as the sample data. <b></b>
DOI: 10.6084/m9.figshare.11515395
title: Input data for conditional simulation of surface rainfall field (30 min accumulated rainfall) using phase annealing

description: p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px 'Helvetica Neue'} span.s1 {font: 12.0px '.PingFang SC'} Four basic datasets required for simulating of a 30-min rainfall event (2017/05/04 13:20-13:50) are archived under the filenames (with description): p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px 'Helvetica Neue'} span.Apple-tab-span {white-space:pre} Radar grid coordinate in GK3 grid_Reutl.npy radar data radar_obs.npy Indicator locations of rain gauges gauge_loc.npy Gauge data gauge_obs.npy <br> Note, GK3 indicates Gauss–Krüger 3 coordinate system. The other files (rFields.npy, uEqs.npy, wts.npy, zFields.npy) or figures (eRain.png, marginals.png) are secondary and generated based on the four basic datasets. The algorithm are provided in the python script inputDisplay.py.
DOI: 10.6084/m9.figshare.11515167
title: Transcription analysis of aborted pistils in pumpkin

description: Transcription analysis of aborted pistils and normal pistils
DOI: 10.6084/m9.figshare.11515167.v1
title: Transcription analysis of aborted pistils in pumpkin

description: Transcription analysis of aborted pistils and normal pistils
DOI: 10.6084/m9.figshare.11513994
title: Soil carbon dioxide response to meteorology in a Neotropical wet forest

description: Repository for <b>Precipitation‐drainage cycles lead to hot moments in soil carbon dioxide dynamics in a Neotropical wet forest</b>, in <i>Global Change Biology</i>, by Fernandez-Bou et al., 2020. https://doi.org/10.1111/gcb.15194 <br>Soil CO<sub>2</sub> concentrations and emissions from tropical forests are modulated seasonally by precipitation. However, sub-seasonal responses to meteorological events (for example, storms, drought) are less well-known. Here we present the effects of meteorological variability on short-term (hours to months) dynamics of soil CO<sub>2</sub> concentrations and emissions in a Neotropical wet forest. We continuously monitored soil temperature, moisture, and CO<sub>2</sub> for a three-year period (2015 to 2017), encompassing normal conditions, floods, a dry El Niño period, and a hurricane. We used a coupled model (Hydrus-1D) for soil water propagation, heat transfer, and diffusive-gas transport to explain observed soil moisture, soil temperature, and soil CO<sub>2</sub> concentration responses to meteorology, and we estimated soil CO<sub>2</sub> efflux with a gradient-flux model. Then, we predicted changes in soil CO<sub>2</sub> concentrations and emissions under different warming climate change scenarios. Observed short-term (hourly to daily) soil CO<sub>2</sub> concentration responded more to precipitation than to other meteorological variables (including lower pressure during the hurricane). Observed soil CO<sub>2</sub> failed to exhibit diel patterns (associated with diel temperature fluctuations in drier climates), except during the drier El Niño period. Climate change scenarios showed enhanced soil CO<sub>2</sub> due to warmer conditions, while precipitation played a critical role in moderating the balance between concentrations and emissions. The scenario with increased precipitation (based on a regional model projection) led to increases of +11 % in soil CO<sub>2</sub> concentrations and +4 % in soil CO<sub>2</sub> emissions. The scenario with decreased precipitation (based on global circulation model projections) resulted in increases of +4 % in soil CO<sub>2</sub> concentrations and +18 % in soil CO<sub>2</sub> emissions, and presented more prominent hot moments in soil CO<sub>2</sub> outgassing. These findings suggest that soil CO<sub>2</sub> will increase under warmer climate in tropical wet forests, and precipitation patterns will define the intensity of CO<sub>2</sub> outgassing hot moments.<br>
DOI: 10.6084/m9.figshare.11513682
title: Suppl Table 4.docx

description: Supplementary Table 4. One-carbon metabolism metabolite concentrations in the liver at 6 days post-IR.
DOI: 10.6084/m9.figshare.11513682.v1
title: Suppl Table 4.docx

description: Supplementary Table 4. One-carbon metabolism metabolite concentrations in the liver at 6 days post-IR.
DOI: 10.6084/m9.figshare.11513679
title: Suppl Table 3.docx

description: Supplementary Table 3. One-carbon metabolism metabolite concentrations in the jejunum at 3.5 and 6 days post-IR.
DOI: 10.6084/m9.figshare.11513676
title: Suppl Table 5.docx

description: Supplementary Table 5. Plasma amino acid concentration (µmol/L).
DOI: 10.6084/m9.figshare.11513679.v1
title: Suppl Table 3.docx

description: Supplementary Table 3. One-carbon metabolism metabolite concentrations in the jejunum at 3.5 and 6 days post-IR.
DOI: 10.6084/m9.figshare.11513673
title: Supplementary Methods.docx

description: Supplemental Materials and Methods
DOI: 10.6084/m9.figshare.11513676.v1
title: Suppl Table 5.docx

description: Supplementary Table 5. Plasma amino acid concentration (µmol/L).
DOI: 10.6084/m9.figshare.11513673.v1
title: Supplementary Methods.docx

description: Supplemental Materials and Methods
DOI: 10.6084/m9.figshare.11513664
title: Suppl Table 1.docx

description: Supplementary Table 1. Composition of MAD and MSD on a per kilogram of diet basis.
DOI: 10.6084/m9.figshare.11513667
title: Suppl Table 2.docx

description: Supplemental Table 2. Individual gene primers for qRT-PCR.
DOI: 10.6084/m9.figshare.11513664.v1
title: Suppl Table 1.docx

description: Supplementary Table 1. Composition of MAD and MSD on a per kilogram of diet basis.
DOI: 10.6084/m9.figshare.11513667.v1
title: Suppl Table 2.docx

description: Supplemental Table 2. Individual gene primers for qRT-PCR.
DOI: 10.6084/m9.figshare.11513073
title: Data for the JGR paper "How to estimate a mean bedload transport rate and its uncertainty?"

description: <br>Here you find the data used in figures 1 to 10. I also provide the Mathematica notebooks used for generating these figures.<br><br>christophe.ancey@epfl.ch<br>Lausanne, January 2020
DOI: 10.6084/m9.figshare.11513073.v1
title: Data for the JGR paper "How to estimate a mean bedload transport rate and its uncertainty?"

description: <br>Here you find the data used in figures 1 to 10. I also provide the Mathematica notebooks used for generating these figures.<br><br>christophe.ancey@epfl.ch<br>Lausanne, January 2020
DOI: 10.6084/m9.figshare.11512899
title: Monitoring Hand ROM using Leap Motion

description: This is a data set containing data for the paper:Monitoring Wrist and Fingers Range of Motion using Leap Motion Camera for Physical Rehabilitation
DOI: 10.6084/m9.figshare.11512821
title: Habit and life forms species_Cerrado of Ceará

description: Raunkiaer Life-forms and species habit recorded in the study areas in Granja and Martinópole in Ceará state.
DOI: 10.6084/m9.figshare.11512899.v1
title: Monitoring Hand ROM using Leap Motion

description: This is a data set containing data for the paper:Monitoring Wrist and Fingers Range of Motion using Leap Motion Camera for Physical Rehabilitation
DOI: 10.6084/m9.figshare.11512821.v1
title: Habit and life forms species_Cerrado of Ceará

description: Raunkiaer Life-forms and species habit recorded in the study areas in Granja and Martinópole in Ceará state.
DOI: 10.6084/m9.figshare.11512821.v2
title: Habit and life forms species_Cerrado of Ceará

description: Raunkiaer Life-forms and species habit recorded in the study areas in Granja and Martinópole in Ceará state.
DOI: 10.6084/m9.figshare.11512473
title: Dataset for "A comparison of gas and water permeability in clay-bearing fault and reservoir rocks: Experimental results and evolution mechanisms"

description: This dataset is provided in support of the manuscript titled 'A comparison of gas and water permeability in clay-bearing fault and reservoir rocks: Experimental results and evolution mechanisms' published on Journal of Geophysical Research-Solid Earth. https://doi.org/10.1029/2019JB018278.
DOI: 10.6084/m9.figshare.11512473.v2
title: Dataset for "A comparison of gas and water permeability in clay-bearing fault and reservoir rocks: Experimental results and evolution mechanisms"

description: This dataset is provided in support of the manuscript titled 'A comparison of gas and water permeability in clay-bearing fault and reservoir rocks: Experimental results and evolution mechanisms' published on Journal of Geophysical Research-Solid Earth. https://doi.org/10.1029/2019JB018278.
DOI: 10.6084/m9.figshare.11512473.v1
title: Gas versus water permeability and its evolution mechanisms in clay-rich fault and reservoir rocks

description: This dataset is provided in support of a manuscript titled 'Gas versus water permeability and its evolution mechanisms in clay-rich fault and reservoir rocks'.
DOI: 10.6084/m9.figshare.11512419
title: Spatial Equity of Welfare Facilities for Elderly People in a City

description: Spatial equity of welfare facilities for elderly people in Daejeon, South Korea
DOI: 10.6084/m9.figshare.11512419.v1
title: Spatial Equity of Welfare Facilities for Elderly People in a City

description: Spatial equity of welfare facilities for elderly people in Daejeon, South Korea