cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24806174.v1
title: Supplementary_material.zip from Seasonal acoustic presence of marine mammals at the South Orkney Islands, Scotia Sea

description: Increased knowledge about marine mammal seasonal distribution and species assemblage from the South Orkney Islands waters is needed for the development of management regulations of the commercial fishery for Antarctic krill (<i>Euphausia superba</i>) in this region. Passive Acoustic Monitoring (PAM) data were collected during the autumn and winter seasons in two consecutive years (2016, 2017), which represented highly contrasting environmental conditions due to the 2016 El Niño event. We explored differences in seasonal patterns in marine mammal acoustic presence between the two years in context of environmental cues and climate variability. Acoustic signals from five baleen whale species, two pinniped species and odontocete spp. were detected and separated into guilds. Although species diversity remained stable over time, the ice-avoiding and ice-affiliated species dominated before and after the onset of winter, respectively, and thus demonstrating a shift in guild composition related to season. Herein, we provide novel information about local marine mammal species diversity, community structure and residency times in a krill hotspot. Our study also demonstrates the utility of PAM data and its usefulness in providing new insights into the marine mammal habitat use and responses to environmental conditions, which are essential knowledge for the future development of a sustainable fishery management in a changing ecosystem.
DOI: 10.17632/7wdp2syvh5
title: DFT Study of the Catalytic Activity for Oxygen Reduction Reaction in Multi-N-Doped Graphene

description: Supplementary Information for Paper: DFT Study of the Catalytic Activity for Oxygen Reduction Reaction in Multi-N-Doped Graphene
DOI: 10.6084/m9.figshare.13187522.v1
title: species VCF

description: VCF files for all species samples.
DOI: 10.6084/m9.figshare.15173082.v1
title: Supplementary Material for: Regulation of miR-126 and miR-122 Expression and Response of Imatinib Treatment on Its Expression in Chronic Myeloid Leukemia Patients

description: <b><i>Background:</i></b> MicroRNAs (miRNAs) have been observed to exhibit altered expression patterns in chronic myeloid leukemia (CML). Therefore, this study was aimed to evaluate the clinical importance of miR-126 and miR-122 expression in concert to imatinib response in CML patients. <b><i>Methods:</i></b> The present study included 100 CML and 100 healthy subjects. The expression of the 2 miRNAs was performed using TaqMan probe chemistry, and snU6 was used as internal control. <b><i>Results:</i></b> The expression of miR-126 and miR-122 was downregulated in CML patients, with a mean fold change ± SD 0.20 ± 0.33 and 0.22 ± 0.37, respectively. While the expression of both miRNAs was analysed before and after imatinib treatment, it was observed that the expression levels of both were increased after imatinib treatment by 26.25-fold (5.33 against 0.20) and 13.95-fold (3.07 against 0.22) and the increase was statistically significant (<i>p</i> &lt; 0.0001 and <i>p</i> &lt; 0.0001, respectively). The expression of miR-126 was not conclusive when compared in different clinical stages of the CML disease as it showed a decreased expression in patients with accelerated phase compared to chronic phase (mean fold change = 0.03 and 0.27, respectively), but patients with chronic phase and blastic phase had comparable expression (mean fold change = 0.27 and 0.24, respectively). We also observed an increased expression of both miRNAs after imatinib therapy in each clinical phase. <b><i>Conclusion:</i></b> The study concludes that expression of miR-126 and miR-122 increases after imatinib treatment in CML patients and that miR-126 defines the good responders of imatinib therapy.
DOI: 10.6084/m9.figshare.21214082.v1
title: Optimized Cysteine structure

description: Gaussian input and output files
DOI: 10.6084/m9.figshare.28138559.v1
title: Canopy Height Monitoring Data and Model of Hainan Tropical Rainforest National Park

description: Biomass carbon sequestration and sink capacities of tropical rainforests are crucial for addressing climate change. However, accurate canopy height estimation is necessary to determine carbon sink potential and implement effective forest management. This study compares the performance of four advanced machine learning algorithms—Random Forest (RF), Gradient Boosting Decision Tree (GBDT), Convolutional Neural Network (CNN), and Backpropagation Neural Network (BP)—in predicting forest canopy height in Hainan Tropical Rainforest National Park. The study uses 140 field survey samples and 315 unmanned aerial vehicle photogrammetry samples, along with multi-modal remote sensing datasets, including GEDI and ICESat satellite LiDAR data, Landsat imagery, and environmental information.The following is a description of the data package:The data in the folder (Model) includes the trained models of the four machine learning algorithms (BP, CNN, GBDT, RF).The data in the folder (Figures) includes the technology roadmap of the research, distribution map of the study area, and data point maps used in the study, along with scatter plots of RH80, RH85, RH90, and RH95 internal and external validation for the four machine learning algorithms (BP, CNN, GBDT, RF).The data in the folder (Datasets) includes the filtered modeling data and external validation data from GEDI and ICESat.The data in the folder (Code) includes the training code and prediction code for four machine learning algorithms (BP, CNN, GBDT, RF).If you require raw high-resolution raster data from other periods, please contact Dr. Qiu Zixuan at zixuanqiu@hainanu.edu.cn.
DOI: 10.6084/m9.figshare.7550009.v1
title: A polyploid admixed origin of beer yeasts derived from European and Asian wine populations

description: @page { margin: 0.79in } p { margin-bottom: 0.1in; line-height: 115% } Summary of data files and scripts used to generate figures in “A polyploid admixed origin of beer yeasts derived from European and Asian wine populations”<br>
DOI: 10.17632/vhds87r252
title: Monitoring udder health status using somatic cell counts in Iranian Holstein-Friesian dairy cows

description: The present study was performed to provide update information about udder health as determined by SCC in Iranian Holstein-Friesian dairy cattle, and to compare results with herds under a mastitis control program.
DOI: 10.6084/m9.figshare.20462871.v1
title: Large-Scale Dynamic Random Graph - Example

description: Zhang et al. (https://link.springer.com/article/10.1140/epjb/e2017-80122-8) suggest a temporal random network with changing dynamics that follow a Markov process, allowing for a continuous-time network history moving from a static definition of a random graph with a fixed number of nodes n and edge probability p to a temporal one. Defining lambda = probability per time granule of a new edge to appear and mu = probability per time granule of an existing edge to disappear, Zhang et al. show that the equilibrium probability of an edge is p=lambda/(lambda+mu) Our implementation, a Python package that we refer to as RandomDynamicGraph https://github.com/ScanLab-ossi/DynamicRandomGraphs, generates large-scale dynamic random graphs according to the defined density. The package focuses on massive data generation; it uses efficient math calculations, writes to file instead of in-memory when datasets are too large, and supports multi-processing. Please note the datetime is arbitrary.
DOI: 10.6084/m9.figshare.28787480.v3
title: High throughput resistance phenotyping of banana (Musa spp.) against Radopholus similis

description: This data was collected by phenotyping banana genotypes, commonly used as parents in the Matooke, Mchare and Plantain pipelines. This data was collected in batches due to the nature of the banana in tissue culture. Some of the genotypes are difficult to multiply hence, we phenotyped the genotypes as they became available and adopted the partially replicated designs.Within each batch, the genotypes were further organised into blocks. Genotypes were the fixed terms while batches and blocks were the random terms. At termination, nematodes were extracted from each individual plant and counted three times. The counts are indicated as C1, C2 and C3 in the file. We further calculated the average nematode count (Av. NC) as well as the nematode count in 25ml (NC in 25ml) and the reproductive factor (RF). Analysis was completed using the RF.
DOI: 10.17028/rd.lboro.23790816.v1
title: Supplementary information files for Synthesis and spectroscopic identification of nickel and cobalt layered hydroxides and hydroxynitrates

description: Supplementary files for article Synthesis and spectroscopic identification of nickel and cobalt layered hydroxides and hydroxynitratesThe formation of different nickel and cobalt layered hydroxide phases by a variety of solution and solid-state synthesis methods have been investigated. Initially, the preparative conditions were refined to generate single-phase products from metal(II) nitrate hexahydrate starting materials and were characterised by powder X-ray diffraction, vibrational spectroscopy and thermogravimetric analysis. As well as the brucite type β-M(OH)<sub>2</sub> and the hydrotalcite-like [M(OH)<sub>2-x</sub>(H<sub>2</sub>O)<sub>x</sub>]<sup>x+</sup> alpha-phases (where M = Ni, Co), two different hydroxynitrate phases were isolated with the generic formula M(OH)<sub>2-x</sub>(NO<sub>3</sub>)<sub>x</sub> with x = 0.67 and 1.0 (where M = Ni, Co). The reduction of symmetry of the nitrate anion from D<sub>3h</sub> to C<sub>2v</sub> allows the alpha-phases to be distinguished from the two different layered hydroxynitrate phases by both infrared and Raman spectroscopy through the loss of symmetry and concomitant splitting of the degenerate bands. The symmetric N-O stretch enables the two hydroxynitrate phases to be distinguished from one another through the sharp absorption bands at ca. 1000 cm<sup>-1</sup> (x = 0.67) and ca. 1050 cm<sup>-1</sup> (x = 1.0). The thermogravimetric analysis data of the phases showed key differences between the layered hydroxides, with anhydrous phases having singular weight losses over short temperature ranges and hydrated phases having multiple losses over more extended temperature ranges.
DOI: 10.6084/m9.figshare.6078734.v4
title: DATA RAW DESCRIPTION.xlsx

description: These 2 files contained the data used to run the analyses of the manuscript entitled 'A global analysis of terrestrial plant litter dynamics in non-perennial waterways". <br><br>One file contains the raw data, the other the description of each variable. For more information, see the full manuscript.<br><b></b><br><br>
DOI: 10.17632/wrwdwy3x36
title: Honeybee Visitation Analysis

description: Raw visitation data and percentage of land behaviour data for honeybee visitations.
DOI: 10.6084/m9.figshare.12220334.v1
title: Contextual Integrity Privacy Risk Questionnaire

description: Contextual Integrity for Open Data in Practice (CLIFOD), a privacy risk assessment questionnaire based on contextual integrity for assessing what privacy risks might be associated with publishing data as open data
DOI: 10.17632/j29hrz5z7j
title: Efficacy and safety of low-dose Interleukin-2 in the treatment of moderate to severe bullous pemphigoid: a single center perspective-controlled trial

description: Supplemental material for " Efficacy and safety of low-dose Interleukin-2 in the treatment of moderate to severe bullous pemphigoid: a single center perspective-controlled trial"
DOI: 10.17632/26v9k5t2zx
title: LC-MS profile dataset for Brucea javanica extract

description: This dataset describes the chemical profiling of dichloromethane Brucea javanica root extract obtained in positive and negative ionization modes. The dataset was acquired using Dionex Ultimate 3000 UPLC system coupled with Orbitrap Q Exactive™ Mass Spectrometer (Thermo Fisher Scientific, Waltham, MA, USA) and can be accessed and processed using Xcalibur™ Software, or any open-source LC-MS processing software (e.g. MZmine, ACD/Labs and any other suitable software.
DOI: 10.17632/hx4r4jywmb
title: S3. PRISMA 2020 checklist

description: The selection of reports for inclusion in the systematic review followed the Preferred Reporting Items for Systematic Reviews and Meta-analysis guidelines (PRISMA)
DOI: 10.6084/m9.figshare.5531770.v1
title: Internal representation of hippocampal neuronal population span a time-distance continuum

description: Calcium imaging data in the pyramidal cell layer of hippocampal region CA1 of a mouse running on a nonmotorized uncued treadmill.200s samples of 1400s imaging sessions performed on the same mouse on two consecutive days.Resolution : 200x200pxFrequency : 10HzField-of-view : 400x400µm
DOI: 10.6084/m9.figshare.29082533.v1
title: <b>Supplementary Table S4.xlsx</b>

description: <b>Supplementary Table S4.</b> Sensitivity assays and operation of pocket LAMP device with portable battery for virus detection.Sensitivity assays for detecting SPFMV and SPCSV were conducted using pocket and case-portable LAMP devices. Tests were performed with dried leaf samples collected in 2023 from Huaral, Lima, Peru. Results are reported as negative reactions (0), Time to Positive (TTP, in minutes), and not tested (nt). Cell phone power banks were used as portable power supply (batteries).
DOI: 10.6084/m9.figshare.7862570.v1
title: Pulse Wave Database: version submitted for peer review

description: This provides a link to the version of the Pulse Wave Database which was made available through PhysioNet for the purposes of peer review.This database of simulated arterial pulse waves is designed to be representative of a sample of pulse waves measured from healthy adults. It will contain pulse waves for 4,374 virtual subjects, aged from 25-75 years old (in 10 year increments). The database will contain a baseline set of pulse waves for each of the six age groups, which was created using cardiovascular properties (such as heart rate and arterial stiffness) which are representative of healthy subjects at each age group. It will also contain 728 further virtual subjects at each age group, in which each of the cardiovascular properties are varied within normal ranges. This allows for extensive <i>in silico</i> analyses of the performance of pulse wave analysis algorithms.
DOI: 10.6084/m9.figshare.16305363.v3
title: CAMI GI (Co-assembly) dataset and binning results

description: CAMI GI dataset from the toy Human Microbiome Project dataset of the second Critical Assessment of Metagenomic Interpretation. Contains the following files.<br>- Contigs file- Paths file (metaSPAdes)- Assembly graph file (metaSPAdes)- Abundance file- Binning results (including CheckM results)
DOI: 10.6084/m9.figshare.25537675.v1
title: 2024_04_03

description: Files used for alfalfa diversity analysis:Original files from DArT are:DAl23-8031_MADC_snpID_rename_updatedSeq_filter_miss_rm10plusHaps.csv = 12,295 microhaplotypes in 2,994 out of 3,000 regions.DAl23-8031_MADC_snpID_rename_updatedSeq_filter_miss_rm10plusHaps_RefAlt.csv = only Ref and Alt reads of target SNPs in 2,994 out of 3,000 regions.4_readDArTag_81bp.R = R script to convert the MACD files to VCF and GenoDive format.GenoDive_Micro.txt = GenoDive file with microhaplotypesGenoDive_Target.txt = GenoDive file containing Target SNPsmetadata_1 and metadata_2 contain information linking samples to populations.<br>
DOI: 10.6084/m9.figshare.25953208.v1
title: Dataset ecommerce

description: <b>Project: Assessment of the relationship between sales efficiency and e-commerce in private dental offices in an emerging Latin-American city</b>
DOI: 10.6084/m9.figshare.28655693.v1
title: Supplemental data to Labbé et al. AJP 2025 (figures and tables)

description: We recently observed in a “two-hit” murine HFpEF model (Angiotensin II (AngII) + High-Fat Diet (HFD) or MHS) that stopping AngII, normalizing the diet, and introducing voluntary exercise (VE) helped reverse cardiac damage and improved exercise capacity. It was unclear if correcting the diet or introducing VE contributed to the left ventricle (LV) reverse remodelling (RR) in addition to removing the hypertensive stressor, AngII.To study the extent of reverse remodelling and myocardial recovery in our murine model, we investigated cardiac resiliency to a second MHS after an extended period of remission of 12 weeks instead of the four we already studied. We also investigated the relative contribution of physical activity and diet correction to RR.
DOI: 10.17632/r6p6x4pthd
title: Data for: IPsec for High Speed Network Links: Performance Analysis and Enhancements

description: This dataset comprise of experimental results for "IPsec for High speed Network Links: Performance Analysis and Enhancements".
DOI: 10.6084/m9.figshare.17023310.v1
title: Genetic insight into Yugu ethnic minority and Han population with MGIEasy Identification system

description: A collection of nuclear and extranuclear DNA markers (totally 241 genetic markers and mtDNA) were assessed comprehensively and systematically for polymorphism investigations, and genetic background dissections in Yugu ethnic group from Gansu province (Yugu) and Han population from Inner Mongolia Autonomous Region of China (NMH). Assembling of individual informative SNPs, ancestry informative SNPs and phenotype informative SNPs indicated that elevated efficiencies of the marker set in separating full sibling and challenging half sibling determination cases in parentage tests, predicting ancestry origins of unknown individuals from at least four continental populations and providing informative characteristic-related clues for Chinese populations were highlighted in the present study. Demographic history analysis based on mtDNA control region also implied that population expansions may have occurred in these two populations during LGM (Yugu), early Holocene (NMH) and the Late Pleistocene (NMH). To sum up, genetic insights from the perspectives of autosomal DNA, Y chromosomal DNA and mtDNA yielded that Yugu ethnic group was genetically closer related to the Han population of northern origin. But considering the complex development and formation process of the Yugu group, we admitted that more relevant groups (like Mongolian, Tibetan, Hui and Tu) were encouraged to be analyzed and compared to gain a refined genetic composition picture of the Yugu group in future work.
DOI: 10.6084/m9.figshare.25957783.v1
title: How Software Industry Specifies Requirements Compliant with Data Protection Laws: a survey-based study - ER 2024

description: How Software Industry Specifies Requirements Compliant with Data Protection Laws: a survey-based study
DOI: 10.6084/m9.figshare.28900922.v1
title: Spatial raster of the proportion of suitably waterlogged soils that could be inhabited by <i>Syzygium maire</i> per 100 × 100 m pixel predicted by high-resolution LUCI modelling.

description: The proportion of suitably waterlogged soils that could be inhabited by <i>Syzygium maire</i> per 100 × 100 m pixel predicted by high-resolution LUCI modelling. Data are in geotiff format, EPSG: 2193. These data are provided as a geospatial .tif raster file. EPSG: 2193.
DOI: 10.17632/hct95nx3t8
title: Decoding_Mechanosensation

description: This data accompanies von Buchholtz et al. cell_info.csv: each row corresponds to a mechanoresponsive trigeminal ganglion cell and contains information about in situ hybridization (ISH) results for each probe (0 = negative, 1 = positive, 0.5 = weak), resulting transcriptomic cell class (C1-13,nd = not determined), basic statistics of GCamp traces (STAT), response peak to various stimuli (MAX), response peak to combinations of stimuli (COMB), ratios between response peaks of different stimuli (RATIO), resulting functional category ('profile') cell_traces.csv: GCamp traces (df/f) for the same cells imaged at 5Hz while stimulated by airpuff, vibration, brush, hairpull, pinch (200 timepoints each) calb2cre_allcells.csv: GCamp traces (df/f) from Calb2Cre/RSL-GCaMP mice imaged at 5Hz while stimulated by airpuff, brush with the grain, brush against the grain, hairpull, pinch and vibration (200 timepoints each). 4pinches_wt.csv: GCamp traces (df/f) for cells from 4 ganglia imaged at 5Hz while stimulated by brush and 4 pinches on a straight line 1mm apart (200 timepoints each).
DOI: 10.6084/m9.figshare.13619339.v1
title: Northern Caribbean & Bahamas Benthic Type Reference Sample

description: This benthic reference data is intended for use as a calibration and/or validation data for global scale remote sensing image based classification of coral reef areas. The data is in a vector shapefile format consisting of polygons labelled with one of seven coral reef benthic classes that include Microalgal Mats, Coral/Algae, Rubble, Rock, Seagrass Dense, Seagrass Sparse, Sand. <b>Please cite data as:</b> Borrego-Acevedo, R., Lyons, M., Canto, R., Harris, D., Kennedy, E., Kovacs , E., Markey, K., Murray, N., Ordonez Alvarez, A., Phinn, S., Roe, M., Roelfsema, C., Say, C., Tudman, P., Wolff, J., Yuwono, D., Bambric, B., Fox, H., Lieb, Z., Asner , G., Knapp , D., Li, J., Harris, B., Larsen, K. & Rice, K. 2020. Northern Caribbean & Bahamas Benthic Type Reference Sample. University of Queensland. DOI: https://doi.org/10.6084/m9.figshare.13619339 <b>Links to supplementary information:</b> Mapping methods overview (https://allencoralatlas.org/methods/) UQ mapping team web site (https://www.rsrc.org.au/globalreef) Detailed mapping methods description by Lyons et al. (https://doi.org/10.1002/rse2.157) Detailed classification scheme description by Kennedy et al. (https://doi.org/10.1038/s41597-021-00958-z) Detailed reference creation description workflow by Roelfsema et al. (https://doi.org/10.3389/fmars.2021.643381) <b>Funding:</b> Vulcan Inc., (https://vulcan.com) Great Barrier Reef Foundation (https://www.barrierreef.org/) <b>Acknowledgement:</b> This work was initiated and funded primarily through Paul Allen Philanthropies and Vulcan Inc. as part of the Allen Coral Atlas. We acknowledge the late Paul Allen and Ruth Gates for their fundamental vision and drive to enable us to work together on this critical reef mapping problem. Project partners providing financial, service and personnel include: Planet Inc., National Geographic, University of Queensland, Arizona State University, and University of Hawai'i. Significant support has also been provided by Google Inc., Great Barrier Reef Foundation, and Trimble (Ecognition). Contributors to establishing and running the project include: Vulcan Inc. [James Deutsch, Lauren Kickam, Paulina Gerstner, Charlie Whiton, Kirk Larsen, Sarah Frias Torres, Kyle Rice, Eldan Goldenberg, Janet Greenlee]; Planet Inc. [Andrew Zolli, Trevor McDonald, Joe Mascaro, Joe Kington]; University of Queensland [Chris Roelfsema, Stuart Phinn, Emma Kennedy, Mitch Lyons, Nicholas Murray, Doddy Yuwono, Dan Harris, Eva Kovacs, Rodney Borrego, Meredith Roe, Jeremy Wolff, Kathryn Markey, Alexandra Ordonez, Chantal Say, Paul Tudman]; Arizona State University [Greg Asner, Dave Knapp, Jiwei Li, Yaping Xu, Nick Fabina, Heather D'Angelo]; and National Geographic [Helen Fox, Brianna Bambic, Brian Free, Zoe Lieb] and Great Barrier Reef Foundation [Petra Lundgren, Kirsty Bevan, Sarah Castine]. Attributions of contributed field data or maps for the reference sample creation are available at: https://allencoralatlas.org/attribution/