cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19731717.v1
title: Changes in testing and incidence of <i>Chlamydia trachomatis</i> and <i>Neisseria gonorrhoeae</i> – the possible impact of the COVID-19 pandemic in the three Scandinavian countries

description: This study aimed to investigate what impact the COVID-19 pandemic and its associated restrictions had on <i>Chlamydia trachomatis</i> and <i>Neisseria gonorrhoeae</i> infections in Sweden, Denmark and Norway, countries with very different governmental strategies for handling this pandemic. Retrospective analysis of data collected <i>via</i> requests to Swedish regions and to health authorities in Denmark and Norway. The data were collected for the years 2018–2020 and the data from Sweden were more detailed. When the pandemic restrictions were installed in 2020, the number of reported chlamydia cases decreased. The decline was most pronounced in Norway 10.8% (2019: <i>n</i> = 28,446; 2020: <i>n</i> = 25,444) while it was only 3.1% in Denmark (2019: <i>n</i> = 35,688; 2020: <i>n</i> = 34,689) and 4.3% in Sweden (2019: <i>n</i> = 34,726; 2020: <i>n</i> = 33,339). Nucleic acid amplifications tests for chlamydia decreased in Sweden (10%) and Norway (18%) in 2020 compared to 2019, while in Denmark a 21% decrease was noted in April 2020 but thereafter increased to a higher level than 2019. The number of reported gonorrhoea cases decreased in Sweden (17%) and in Norway (39%) in 2020 compared to 2019, while a 21% increase was noted in Denmark. Pandemic restrictions had an impact on the number of reported chlamydia infections in all three countries, but only temporarily and did not seem to be correlated to the restriction levels. The number of reported gonorrhoea infections in Sweden and Norway significantly decreased but not in Denmark. Pandemic restrictions appear to have had a limited effect on the spread of chlamydia and gonorrhoea.
DOI: 10.6084/m9.figshare.21303718
title: Additional file 1 of CXCL12/CXCR7/β-arrestin1 biased signal promotes epithelial-to-mesenchymal transition of colorectal cancer by repressing miRNAs through YAP1 nuclear translocation

description: Additional file 1: Fig. S1. A, B RT-qPCR and Western blot analysis of the expression of CXCR7 at mRNA and protein levels in CRC cells. Fig. S2. Transwell assay was performed in HCT116CXCR7 and SW620CXCR7 cells compared with controls. Migrating cells were quantified. **P &lt; 0.01. ***P &lt; 0.001. Fig. S3. The correlations of CXCR7 (ACKR3) with ZEB1 and SNAI1 were determined in CRC tissues by Gene Expression Profiling Interactive Analysis (GEPIA). Fig. S4. A, B RT-qPCR analysis of the levels of miR-124-3p and miR-188-5p in HCT116, HT29 and SW620 cells transfected with these miRNA mimics (124m, 188m) and inhibitors (124i, 188i). Fig. S5. A, B Western blot analysis of the expression levels of YAP1, DCLK1 and Vimentin in HCT116 and SW620 cells transfected Flag-YAP-5SA compared with vector control. Anti-Flag antibodies were used to indicate the overexpression of Flag-YAP-5SA plasmid in CRC cells. Fig. S6. IF analysis of YAP1 nuclear translocation in HCT116 cells treated with CXCL12 (100 ng/ml) for different time course as indicated. YAP1 was labeled with Alexa Fluor® 488 donkey anti-rabbit secondary antibody. Nuclei were visualized with DAPI. Scale bars, 50 µm. Fig. S7. Western blot analysis of the expression levels of β-arrestin1 in HCT116 nuclear extracts stimulated by CXCL12 (100 ng/ml) for different time course as indicated. GAPDH and Histone H3 were used as cytoplasmic and nuclear loading control, respectively. Fig. S8. Transcriptional factor YY1 was predicted to bind to promoters of miR-124-3p and miR-188-5p by TransmiR 2.0 database. Fig. S9. Western blot analysis of the expression levels of YY1, DCLK1 and Vimentin in HCT116 and SW620 cells transfected with vector control and HA-YY1 plasmid. HA-tag was used to indicate the overexpression of YY1 in CRC cells. Fig. S10. The correlations of YAP1 with ZEB1 and SNAI1 were determined in CRC tissues by Gene Expression Profiling Interactive Analysis (GEPIA).
DOI: 10.6084/m9.figshare.21303718.v1
title: Additional file 1 of CXCL12/CXCR7/β-arrestin1 biased signal promotes epithelial-to-mesenchymal transition of colorectal cancer by repressing miRNAs through YAP1 nuclear translocation

description: Additional file 1: Fig. S1. A, B RT-qPCR and Western blot analysis of the expression of CXCR7 at mRNA and protein levels in CRC cells. Fig. S2. Transwell assay was performed in HCT116CXCR7 and SW620CXCR7 cells compared with controls. Migrating cells were quantified. **P &lt; 0.01. ***P &lt; 0.001. Fig. S3. The correlations of CXCR7 (ACKR3) with ZEB1 and SNAI1 were determined in CRC tissues by Gene Expression Profiling Interactive Analysis (GEPIA). Fig. S4. A, B RT-qPCR analysis of the levels of miR-124-3p and miR-188-5p in HCT116, HT29 and SW620 cells transfected with these miRNA mimics (124m, 188m) and inhibitors (124i, 188i). Fig. S5. A, B Western blot analysis of the expression levels of YAP1, DCLK1 and Vimentin in HCT116 and SW620 cells transfected Flag-YAP-5SA compared with vector control. Anti-Flag antibodies were used to indicate the overexpression of Flag-YAP-5SA plasmid in CRC cells. Fig. S6. IF analysis of YAP1 nuclear translocation in HCT116 cells treated with CXCL12 (100 ng/ml) for different time course as indicated. YAP1 was labeled with Alexa Fluor® 488 donkey anti-rabbit secondary antibody. Nuclei were visualized with DAPI. Scale bars, 50 µm. Fig. S7. Western blot analysis of the expression levels of β-arrestin1 in HCT116 nuclear extracts stimulated by CXCL12 (100 ng/ml) for different time course as indicated. GAPDH and Histone H3 were used as cytoplasmic and nuclear loading control, respectively. Fig. S8. Transcriptional factor YY1 was predicted to bind to promoters of miR-124-3p and miR-188-5p by TransmiR 2.0 database. Fig. S9. Western blot analysis of the expression levels of YY1, DCLK1 and Vimentin in HCT116 and SW620 cells transfected with vector control and HA-YY1 plasmid. HA-tag was used to indicate the overexpression of YY1 in CRC cells. Fig. S10. The correlations of YAP1 with ZEB1 and SNAI1 were determined in CRC tissues by Gene Expression Profiling Interactive Analysis (GEPIA).
DOI: 10.6084/m9.figshare.19731832
title: Table_1_A cocktail of three virulent phages controls multidrug-resistant Salmonella infection in poultry

description: This is the supplementary materials for article "A cocktail of three virulent phages controls multidrug-resistant <em>Salmonella</em> infection in poultry"
DOI: 10.6084/m9.figshare.21829017
title: Geographical subdivision of Alviniconcha snail populations in the Indian Ocean hydrothermal vent regions

description: The data include input data used for molecular analyses in the study "Geographical subdivision of Alviniconcha snail populations in the Indian Ocean hydrothermal vent regions."
DOI: 10.5523/bris.314kcutovxtty25yua4ptpjwk1
title: Griffin_pterosaur_moment_arms NEW
title: Pterosaur moments new

description: An updated version of https://doi.org/10.5523/bris.13il5kcangepq2kfk8i4ap37iw
(Griffin_pterosaur_moment_arms) created by Liz Martin-Silverstone with advice from Christopher at Research data service
DOI: 10.6084/m9.figshare.8196953
title: Additional file 1 of Plasma metabolomic profiling of proliferative diabetic retinopathy

description: KEGG PATHWAY Database. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8196959
title: Additional file 2 of Plasma metabolomic profiling of proliferative diabetic retinopathy

description: Metabolites Database. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.8196953.v2
title: Additional file 1 of Plasma metabolomic profiling of proliferative diabetic retinopathy

description: KEGG PATHWAY Database. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8196959.v2
title: Additional file 2 of Plasma metabolomic profiling of proliferative diabetic retinopathy

description: Metabolites Database. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.25243117.v1
title: NFS with only the subjects who went through the generalization test

description: A linear mixed model for the number of failed sequences of the tests with only the subjects who went through the generalization test
DOI: 10.6084/m9.figshare.8197673
title: Table S3. Thickening and partial melting of the Northern Qinling Orogen, China: Insights from zircon U–Pb geochronology and Hf isotopic compositions of migmatite

description: Table S3: Lu–Hf isotopic compositions of zircons from the Weiziping migmatites.
DOI: 10.6084/m9.figshare.8197673.v1
title: Table S3. Thickening and partial melting of the Northern Qinling Orogen, China: Insights from zircon U–Pb geochronology and Hf isotopic compositions of migmatite

description: Table S3: Lu–Hf isotopic compositions of zircons from the Weiziping migmatites.
DOI: 10.6084/m9.figshare.8197676
title: Table S1. Thickening and partial melting of the Northern Qinling Orogen, China: Insights from zircon U–Pb geochronology and Hf isotopic compositions of migmatite

description: Table S1: LA–ICP–MS U–Pb data of zircons from the Weiziping migmatites.
DOI: 10.6084/m9.figshare.8197679
title: Table S2. Thickening and partial melting of the Northern Qinling Orogen, China: Insights from zircon U–Pb geochronology and Hf isotopic compositions of migmatite

description: Table S2: Trace elements geochemistry (ppm) of zircons and Ti-in-zircon thermometry for Weiziping migmatites.
DOI: 10.6084/m9.figshare.8197679.v1
title: Table S2. Thickening and partial melting of the Northern Qinling Orogen, China: Insights from zircon U–Pb geochronology and Hf isotopic compositions of migmatite

description: Table S2: Trace elements geochemistry (ppm) of zircons and Ti-in-zircon thermometry for Weiziping migmatites.
DOI: 10.6084/m9.figshare.24974986
title: Managing congestion at the entrance of subway stations with reserved inbound service

description: During peak hours at many entrances of subway stations, huge queues of passengers try to enter. To address this congestion, the city of Beijing has introduced a reserved inbound services in several subway stations. Passengers can reserve a time interval via which they can enter with reduced queuing. We aim to analyse and optimize this system while modelling the congestion and choices of travellers using a Vickrey bottleneck model approach. We develop a reserved system where there can be a different number of reservation time intervals before and after the preferred arrival time, and for common preferences for schedule delay adding intervals before the preferred arrival time reduces travel costs more than adding them after it. Results show that the time interval set can influence both implementation conditions and the efficiency of the reserved system. Suggestions about the time interval set are given. Passengers’ inbound choices with different inbound peak reservation costs are analysed.
DOI: 10.6084/m9.figshare.24974986.v1
title: Managing congestion at the entrance of subway stations with reserved inbound service

description: During peak hours at many entrances of subway stations, huge queues of passengers try to enter. To address this congestion, the city of Beijing has introduced a reserved inbound services in several subway stations. Passengers can reserve a time interval via which they can enter with reduced queuing. We aim to analyse and optimize this system while modelling the congestion and choices of travellers using a Vickrey bottleneck model approach. We develop a reserved system where there can be a different number of reservation time intervals before and after the preferred arrival time, and for common preferences for schedule delay adding intervals before the preferred arrival time reduces travel costs more than adding them after it. Results show that the time interval set can influence both implementation conditions and the efficiency of the reserved system. Suggestions about the time interval set are given. Passengers’ inbound choices with different inbound peak reservation costs are analysed.
DOI: 10.6084/m9.figshare.16586420
title: MOFs-Based Nanoagent Enables Dual Mitochondrial Damage in Synergistic Antitumor Therapy via Oxidative Stress and Calcium Overload

description: Source data generated in this study for main
text have been provided as xls format.<br>
DOI: 10.6084/m9.figshare.16586456
title: MOFs-Based Nanoagent Enables Dual Mitochondrial Damage in Synergistic Antitumor Therapy via Oxidative Stress and Calcium Overload

description: Source data generated
in this study for supplementart information have been provided as xls format.
DOI: 10.6084/m9.figshare.22353645
title: Application of robot-assisted radical prostatectomy in men over 75 years: an analysis of comparative outcomes

description: This study aimed to summarize the current evidence regarding the feasibility of robot-assisted radical prostatectomy (RARP) in men aged over 75 years. A comprehensive search of four electronic databases (China National Knowledge Infrastructure, PubMed, Web of Science, and Cochrane Library) was performed to identify eligible comparative studies as of April 2022. Parameters, including perioperative results and oncological and functional outcomes, were evaluated. Seven articles with 7575 patients undergoing RARP were included in this study. Patients with prostate cancer were grouped by age ≥ 75 years versus &lt; 75 years. Our results demonstrated that compared with the older group, the younger group had better potency (<i>p</i> &lt; .00001). However, there were no significant differences in operation time (<i>p</i> = .29), estimated blood loss (<i>p</i> = .13), length of hospital stay (<i>p</i> = .48), complications (<i>p</i> = .22), continence (<i>p</i> = .21), positive surgical margin (<i>p</i> = .28), and biochemical recurrence (<i>p</i> = .74) between the groups. Our study revealed that the perioperative, oncological, and functional outcomes in men aged over 75 years undergoing RARP were not significantly different from those of their younger counterparts. RARP is feasible in men aged over 75 years.
DOI: 10.6084/m9.figshare.22353645.v1
title: Application of robot-assisted radical prostatectomy in men over 75 years: an analysis of comparative outcomes

description: This study aimed to summarize the current evidence regarding the feasibility of robot-assisted radical prostatectomy (RARP) in men aged over 75 years. A comprehensive search of four electronic databases (China National Knowledge Infrastructure, PubMed, Web of Science, and Cochrane Library) was performed to identify eligible comparative studies as of April 2022. Parameters, including perioperative results and oncological and functional outcomes, were evaluated. Seven articles with 7575 patients undergoing RARP were included in this study. Patients with prostate cancer were grouped by age ≥ 75 years versus &lt; 75 years. Our results demonstrated that compared with the older group, the younger group had better potency (<i>p</i> &lt; .00001). However, there were no significant differences in operation time (<i>p</i> = .29), estimated blood loss (<i>p</i> = .13), length of hospital stay (<i>p</i> = .48), complications (<i>p</i> = .22), continence (<i>p</i> = .21), positive surgical margin (<i>p</i> = .28), and biochemical recurrence (<i>p</i> = .74) between the groups. Our study revealed that the perioperative, oncological, and functional outcomes in men aged over 75 years undergoing RARP were not significantly different from those of their younger counterparts. RARP is feasible in men aged over 75 years.
DOI: 10.6084/m9.figshare.22785800.v2
title: Terrestrial Ecosystem Disturbance- harvested carbon in cropland

description:  We have produced a dataset that provides a comprehensive analysis of harvested carbon from crop production in China over a 40-year period, from 1981 to 2020. The dataset, with a spatial resolution of 10x10 km, categorizes cropland into five types, and reveals that grain crops contributed the largest share of total harvested carbon at 75.9%. The mean harvested carbon of the cropland ecosystem was 0.31 Gt C yr-1 over the past 40 years. The dataset is expected to aid in estimating the carbon budget of cropland ecosystems and China as a whole. The data, available via an open-data repository, offers valuable insights for sustainable agriculture and climate change mitigation research and policy-making
DOI: 10.6084/m9.figshare.12916151
title: Additional file 2 of CircRNA_104889 promotes lung adenocarcinoma cell invasion via sponging miR4458

description: Additional file 2. Differentially downregulated circRNAs in A549 cells compared to HBE.
DOI: 10.6084/m9.figshare.12916151.v1
title: Additional file 2 of CircRNA_104889 promotes lung adenocarcinoma cell invasion via sponging miR4458

description: Additional file 2. Differentially downregulated circRNAs in A549 cells compared to HBE.
DOI: 10.6084/m9.figshare.9770876
title: High-Throughput Screening Platform for Solid Electrolytes Combining Hierarchical Ion-Transport Prediction Algorithms

description: The combination of a materials database with high-throughput ion-transport calculations is an effective approach to screen for promising solid electrolytes. However, automating the complicated preprocessing involved in currently widely used ion-transport characterization algorithms, such as the first-principles nudged elastic band (FP-NEB) method, remains challenging. Here, we report on high-throughput screening platform for solid electrolytes (SPSE) that integrates a materials database with hierarchical ion-transport calculations realized by implementing empirical algorithms to assist in FP-NEB calculation. We first preliminarily screen candidates and determine the approximate ion-transport paths using empirical geometric analysis and bond valence method. A chain of images is then automatically generated along these paths for accurate FP-NEB calculation. In addition, an open web interface is actualized to enable access to the SPSE database, thereby facilitating machine learning. This interactive platform provides a workflow toward high-throughput screening for future discovery and design of promising solid electrolytes and the SPSE database is based on the FAIR principles for the benefit of the broad research community.<br>
DOI: 10.6084/m9.figshare.24975291
title: Learning and managing stochastic network traffic dynamics: an iterative and interactive approach

description: This study examines the potential of an iterative and interactive approach to learn network traffic dynamics and optimise tolling strategies considering time-varying stochastic traffic. A tractable ‘truth model’ based on the stochastic Macroscopic Fundamental Diagram is developed to represent the transportation system to be learned and managed. A ‘twin model’ that mirrors the truth model is formulated and calibrated for testing and optimising tolling adjustment strategies with the help of reinforcement learning. The optimised prices are then put into the ‘truth model’ to evaluate network efficiency improvement. The above procedure is iterative and interactive, which can be applied for congestion management in the period-to-period tolling adjustment fashion. Numerical studies show that the proposed iterative and interactive pricing strategy is able to enhance network efficiency even under limited information and/or inaccurate learning of the system. This illustrates the great potential of utilising iterative and interactive frameworks for congestion management.
DOI: 10.6084/m9.figshare.24975291.v1
title: Learning and managing stochastic network traffic dynamics: an iterative and interactive approach

description: This study examines the potential of an iterative and interactive approach to learn network traffic dynamics and optimise tolling strategies considering time-varying stochastic traffic. A tractable ‘truth model’ based on the stochastic Macroscopic Fundamental Diagram is developed to represent the transportation system to be learned and managed. A ‘twin model’ that mirrors the truth model is formulated and calibrated for testing and optimising tolling adjustment strategies with the help of reinforcement learning. The optimised prices are then put into the ‘truth model’ to evaluate network efficiency improvement. The above procedure is iterative and interactive, which can be applied for congestion management in the period-to-period tolling adjustment fashion. Numerical studies show that the proposed iterative and interactive pricing strategy is able to enhance network efficiency even under limited information and/or inaccurate learning of the system. This illustrates the great potential of utilising iterative and interactive frameworks for congestion management.
DOI: 10.6084/m9.figshare.22354015
title: Deciphering the gut microbiome of grass carp through multi-omics approach

description:  We attempted to construct metagenome-assembled genomes (MAGs) from the fish gut based on metagenomic data and assembled a total of 129 high-quality MAGs (Completeness &gt;80% and contamination &lt;10%）
DOI: 10.6084/m9.figshare.25243249
title: Do urban-living yellow mongooses, Cynictis penicillata, experience a paradox of choice?

description: POC_Data_Set: Full dataset for the titled "Do urban-living yellow mongoose, Cynictis penicillata, experience a paradox of choice?"POC_Code: R script used for data analyses and figuresLatencies and SAB: CSV files used in R script
DOI: 10.6084/m9.figshare.25243249.v4
title: Do urban-living yellow mongooses, Cynictis penicillata, experience a paradox of choice?

description: POC_Data_Set: Full dataset for the titled "Do urban-living yellow mongoose, Cynictis penicillata, experience a paradox of choice?"POC_Code: R script used for data analyses and figuresLatencies and SAB: CSV files used in R script
DOI: 10.6084/m9.figshare.25243249.v3
title: Do urban-living yellow mongooses, Cynictis penicillata, experience a paradox of choice?

description: Dataset for the titled "Do urban-living yellow mongoose, Cynictis penicillata, experience a paradox of choice?"
DOI: 10.5517/ccdc.csd.cc2ckhq5
title: CCDC 2191567: Experimental Crystal Structure Determination

description: Related Article: Pengwei Fang, Muqing Chen, Nan Yin, Guilin Zhuang, Tianyun Chen, Xinyu Zhang, Pingwu Du|2023|Chemical Science|14|5425|doi:10.1039/D3SC00035D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.22785800.v3
title: 陆地生态系统干扰 - 农田碳收获

description: 我们制作了一个数据集，对 1981 年至 2020 年 40 年间中国作物生产收获的碳进行了全面分析。该数据集的空间分辨率为10x10 km，将耕地分为五种类型，并显示粮食作物在收获总碳中占比最大，为75.9%。过去40年，农田生态系统平均收获碳为0.31 Gt C yr-1。该数据集有望帮助估算耕地生态系统和整个中国的碳收支。这些数据通过开放数据存储库提供，为可持续农业和减缓气候变化的研究和政策制定提供了宝贵的见解。We have created a dataset that conducts a comprehensive analysis of carbon harvested from crop production in China over a 40-year period from 1981 to 2020. This dataset has a spatial resolution of 10x10 km, categorizes arable land into five types, and shows that cereal crops account for the largest proportion of total carbon harvested, at 75.9%. Over the past 40 years, the average carbon harvested in agricultural ecosystems was 0.31 Gt C yr-1. This dataset is expected to aid in estimating the carbon budget of arable ecosystems and of China as a whole. The data are available through open data repositories, providing valuable insights for research and policy-making aimed at sustainable agriculture and mitigating climate change.
DOI: 10.5517/ccdc.csd.cc2ckhr6
title: CCDC 2191568: Experimental Crystal Structure Determination

description: Related Article: Pengwei Fang, Muqing Chen, Nan Yin, Guilin Zhuang, Tianyun Chen, Xinyu Zhang, Pingwu Du|2023|Chemical Science|14|5425|doi:10.1039/D3SC00035D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.