cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/h4dmtpgdnf
title: Temporal and spatial differences between predicted and measured organic carbon in South Atlantic sediments: constraints to organic facies modelling

description: The evaluation of total organic carbon (TOC) content from wells is a routine practice for assessing source rock potential, and because of this, empirical relationships to estimate TOC content have been proposed and used in organic facies modeling. However, no critical evaluations address how well the available TOC-predictive equations estimate the TOC content in recent and past sediments of the South Atlantic. In order to investigate the performance of the available TOC-predictive equations in this study, we compiled a large South Atlantic dataset composed of new and published modern TOC, dry bulk density, and sedimentation rate with the associated satellite-derived net primary productivity. We repeat this exercise for another time interval using the same input parameters but estimating net primary productivity using transfer functions. Our results indicate that all equations tend to overestimate the modern TOC distribution, mainly at the continental margins and at the edges of the subtropical gyre. In addition, the equations perform better in the eastern compared to the western South Atlantic. The reason for that may rely on the fact that these equations were built under the consideration that an increase in primary productivity must generate an increase in TOC, which is not always the case. The tendency to overestimate the TOC content was also apparent for the downcore data, although with reduced magnitude. The reasons behind the different performances of equations are explained by the way they incorporate the input parameters into their formulations, which is especially relevant for primary productivity, sedimentation rates, and the inclusion of processes such as the carbon flux. Our compilation indicates that the use of a single equation is not adequate to resolve the broad spatial TOC distribution in marine environments and that organic facies modelling software should consider regional aspects in order to produce adequate quantitative estimations of TOC content. Additionally, we used our dataset to investigate the optimal environmental conditions linked to organic-rich sediments in the South Atlantic. Our results show that high productivity, shallow depths, and ideal sedimentation conditions are required for the occurrence of organic-rich sediments and can be viewed as important factors preconditioning the formation of black shales in the South Atlantic.
DOI: 10.17632/ty3t9fpfj4
title: Example survey and drawing data

description: Example survey and drawing data
DOI: 10.17632/hyd3p6w8sv
title: Digital accessibility of vocational education and e-learning in the Russian Federation: content of regulatory guidance documents

description: English
The dataset contains the results of the analysis of regulatory guidance documents (25 documents in total for 2013-2022) related to ensuring the accessibility of vocational education and e-learning for people with disabilities in the Russian Federation. The selection of documents was carried out in August 2023 on the website of the GARANT reference and search system (https://www.garant.ru/) using advanced search filters and the keywords in Russian: “disability”, “education”, “training” (including case forms of keywords). By means of content analysis, the content of the selected documents was systematized according to the following groups of parameters: creation of conditions for vocational education (10 parameters); the procedure for organizing exams (10 parameters); the procedure for applying e-learning and distance learning technologies (26 parameters); the procedure for the assessment of digital educational content (5 parameters). The dataset also contains the documents' details and links to the full texts of the documents. The dataset is presented in two languages: English (DigitalAccessVocationalTraining_EN.xlsx) and Russian (DigitalAccessVocationalTraining_RU.xlsx).

Русский
Набор данных содержит результаты анализа нормативных инструктивных документов (всего 25 документов за 2013-2022 гг.), имеющих отношение к обеспечению доступности профессионального образования и электронного обучения лиц с ограниченными возможностями здоровья в Российской Федерации (РФ). Отбор документов осуществлялся в августе 2023 года на сайте справочно-поисковой системы по законодательству РФ «ГАРАНТ» (https://www.garant.ru/) с помощью фильтров расширенного поиска и по ключевым словам на русском языке: «ограниченные возможности здоровья», «инвалидность», «образование», «обучение» (включая падежные формы). Путем контент-анализа выполнена систематизация содержимого отобранных документов по следующим группам параметров: создание условий профессионального образования (10 параметров); порядок организации экзаменов (10 параметров); порядок применения электронного обучения и дистанционных образовательных технологий (26 параметров); порядок экспертизы цифрового образовательного контента (5 параметров). Набор данных содержит также реквизиты и ссылки на полные тексты документов. Набор данных представлен на английском (DigitalAccessVocationalTraining_EN.xlsx) и русском (DigitalAccessVocationalTraining_RU.xlsx) языках.
DOI: 10.17632/svd96gjh6d
title: K9ac by Rt109 promotes nucleosomes replacement ahead of the replication

description: this is the pre-processed data to run the Matlab scripts provided in https://github.com/barkailab/Yaakov2022/
DOI: 10.17632/pntxsy7tc5
title: The Expression of COL5A2 in Melanoma of vagina and its Clinical Significance

description: 全外显子测序结果
DOI: 10.17632/wy8f58xf2j
title: LINF_320020500

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/dhtdcftrnn
title: Part 8 of data for Elizondo et al Adipose Tissue Macrophage Transglutaminase 2 and the Inflammation of Diet-Induced Obese Male Mice

description: Part 8 of data for Elizondo et al Adipose Tissue Macrophage Transglutaminase 2 and the Inflammation of Diet-Induced Obese Male Mice, RNAseq analysis files, continued
DOI: 10.17632/zr5rs6sd8p
title: Conventional immunomarkers stain a fraction of astrocytes in vitro: A comparison of rat cortical and spinal cord astrocytes in naïve and stimulated cultures

description: In the present study, we analyzed the percent immunopositive cells in astrocyte-enriched, microglia-enriched, and oligodendrocyte-enriched cultures isolated from the cortex or spinal cord of neonatal rats for six markers that have been previously used to label astrocytes: GFAP, GLAST, GLT-1, GS, ALDH1L1, and SOX9. We also stimulated astrocyte cultures with either transforming growth factor (TGF)-β1, shown to induce reactive astrogliosis in rodent cortical astrocytes in vitro, or TGF-β3, shown to dampen reactivity markers in astrocytes in vitro. Markers were evaluated based on the following criteria: (1) ability to stain all astrocytes in a given culture, (2) resistance to changes in the percentage of positively stained astrocytes after stimulation with either TGF-β1 or TGF-β3, and (3) no positive staining of microglia and oligodendrocytes in cultures isolated from the same region in the CNS (cortex or spinal cord). In doing so, we aimed to investigate protein expression differences between cortical and spinal cord astrocytes and changes in marker expression with TGF-β1 and TGF-β3 stimulation in vitro. We found that only SOX9 in cortical cultures and ALDH1L1 in spinal cord cultures labeled more than 75% of the cells in naïve and stimulated astrocyte cultures and stained less than 5% of the cells in microglia and oligodendrocyte cultures. Further, significantly more cortical than spinal cord astrocytes stained for GFAP, GLAST, ALDH1L1, and SOX9 in naïve cultures, whereas significantly more spinal cord than cortical astrocytes stained for GLAST, GS, and ALDH1L1 in TGF-β1-treated cultures. These findings are important as variability in marker staining may lead to misinterpretation of the astrocyte response in cocultures, migration assays, or engineered disease models. The first sheet in the excel file shows the number of CD68+ microglia and MBP+ oligodendrocytes in each culture condition (naïve or stimulated with TGF-β1 or TGF-β3 in cultures derived from either rat cortex or spinal cord), which was used to calculate the percentage of astrocytes in the cultures. The second sheet in the file shows the number of immunopositive cells counted for each replicate in all culture conditions.
DOI: 10.17632/4bzgzn6r6h
title: Bullying in Pakistani Schools

description: The data file presents 382 student's responses about bullying and victimization experiences. Some demographics variables are also included in the dataset.
DOI: 10.17632/b3m9t6jfmx
title: Cesati_et_al_Cancer_2020

description: Gene expression of the 27 cytokines investigated in the paper by Cesati et al. Cancer 2020
Patients are reported in lines; clinical features and cytokines expression are reported in columns.
Three sections are reported :
one for primary melanoma; one or metastatic melanomas ; one for normal skin.
DOI: 10.17632/df99yz8xnf
title: Bertocchi Brunetti Zaiceva 2020

description: Data for The Financial Decisions of Immigrant and Native Households: Evidence from Italy. Source: SHIW
DOI: 10.17632/st29d98fhp
title: Root-Bearing Portions of a young Pseudosporochnalean from the Catskill Delta Complex of New York

description: Serial transverse and longitudinal sections with interpretations.
DOI: 10.17632/b8tj5dcgdw
title: Presence of a common predator, Sheepshead (Archosargus probatocephalus), affects survival of Eastern Oyster (Crassostrea virginica) in an experimental setting 

description: Oyster reefs are a vital but declining component of nearshore, estuarine ecosystems. Global efforts to restore this important habitat are ongoing but have had varied success. The potential for biotic factors such as predation to influence restoration trajectories is rarely considered; however, there is mounting evidence that a better understanding of trophic relationships could aid in the restoration of the ecologically critical Eastern oyster (Crassostrea virginica). A common predator-prey interaction within the oyster reef community was examined through manipulative experiments to determine what effect predator presence had on early survivorship of oysters – a factos known to influence success of oyster reef restoration. The stone crab (Menippe spp.) is a known predator of spat (<30 mm) and juvenile (30 mm-75 mm) sized Eastern oysters but also serves as prey for more mobile predatory fish. Sheepshead (Archosargus probatocephalus), a fish with a diet high in structure-associated invertebrates, are one of many predatory fishes that utilize oyster reefs. Sheepshead presence was found to significantly increase juvenile oyster survival through reduction in stone crab abundance. The mechanism was primarily trait-mediated interactions (i.e. behavioral or indirect effects) although evidence for density-mediated reduction was also present. These results suggest that changes in abundance of an exploited finfish species can influence juvenile oyster survivorship and hence performance of oyster restoration efforts.
DOI: 10.17632/73j3nzjxd3
title: The COVIDome Explorer Researcher Portal. Sullivan et. al.

description: There are seven datasets related to The COVIDome Explorer Researcher Portal in this entry: Supplemental File 1 - Cohort Characteristics, Supplemental File 2 - Results of Linear Models by COVID-19 Status, Supplemental File 3 - Multi-omics Biosignatures of CRP, Supplemental File 4 - Mass Cytometry Antibody Table, the COVIDome Sample Metadata, the COVIDome SOMAscan® dataset, and the COVIDome MSD Cytokine Dataset. These datasets were generated by the COVIDome Project at the University of Colorado Anschutz Medical Campus. To learn more about the COVIDome Project please visit covidome.org. The Sample Metadata file describes sample ID, COVID19 status at the time of blood draw (positive or negative), sex and age. The SOMAscan® dataset is a plasma proteomics dataset obtained from research participants with and without COVID19 using the SOMAscan® technology. The MSD cytokine dataset was generated using multiplex immunoassays with Meso Scale Discovery (MSD) technology.
DOI: 10.17632/4kfygpz4wt
title: The fluvial geomorphology of the Río Chubut valley and tributaries (~42°S, ~70°W, Argentina).

description: This dataset includes 49 shapefiles detailing past and present drainage of the Rio Chubut catchment headwaters, higher-level terrace framework and lower-level fluvial geomorphology of a 75 km study reach. Shapefiles are georeferenced to the Geographic coordinate system WGS1984 and suitable for use in geographical information system software such as ArcMap. Applications of these data include the visualisation and analysis of contemporary and paleo-drainage of the Rio Chubut. The original publication should be cited when data is used or referred to. 
Shapefiles are sorted into 4 folders; the "Catchment" folder includes features associated with the past and present feeders to the Rio Chubut (e.g. Lakes, lateral moraines (evidence of glacial feeders) and decoupled drainage channels ("Chubut_Glacial_Catchment.shp")), the "Tributaries" folder includes individual polyline shapefiles for the tributaries feeding Rio Chubut, the "Terraces" folder include shapefiles for the higher-level terraces in the Rio Chubut and tributaries and a txt. file explaining the method and results ("1_METHOD AND RESULTS.txt") of this analysis, finally the "StudyReach" folder includes all geomorphological features mapped in the lower level valley along the 75 km study reach including polyline shapefiles detailing a variety of paleochannels and - for better visualisation -polygon shapefiles marking the boundary between fluvial surfaces.
DOI: 10.17632/hvg7yxpjmc
title: The Impact of the COVID-19 Pandemic on the Tourism Industry in Selected Central Asia Regional Economic Cooperation (CAREC) Countries

description: The purpose of this paper is to investigate the impact of the COVID-19 pandemic on the tourism industry in the CA region and consider how it may change the society, economy, and tourism in the countries within this region. This study focused on eight countries in the CAREC region—Azerbaijan, China, Georgia, Kazakhstan, Kyrgyzstan, Mongolia, Tajikistan, and Uzbekistan and a quarterly panel regression model from 2000q1–2020q4 was applied. Variables apply in this study are international tourists arrive in the country (Y),  , and (X) is a set of independent variables. These parameters are total confirmed COVID-19 cases (conf), total number of deceased people (cond), as well as other control variables, including population density (popden), GDP per capita (GDP), cost of health—out-of-pocket health expenditure—(health), the total per hospital beds (capacity), and the total number of healthcare workers – nurses and midwives (nandMW).
DOI: 10.17632/9nmn8fsty4
title: Data from: Foraging behavior of an omnivorous bird varies in mixed-species groups

description: Data and R codes corresponding to the manuscript:
"Foraging behavior of an omnivorous bird varies in mixed-species groups"

Data include (i) presence/absence of species in mixed-species flocks of birds in which coal-crested finches (Charitospiza eucosma) joined; (ii) phenology of fruiting and seed-dispersing on grass species; and (iii) foraging behavior (food items consumed and foraging substrate) of coal-crested finches in a savanna patch in central Brazil.
DOI: 10.17632/bry68gkfy2
title: Supplemental Materials for Post-ICI Psoriasis

description: This document contains the search strategy and raw data extracted from all the articles included in this study
DOI: 10.17632/vh55y46yr4
title: Maxicircles_Rogers_2014

description: This dataset contains 3 maxicircles sequences assembled from Illumina sequence reads; the sequencing of total DNA from these Leishmania infantum isolates was carried out by Roggers et al. (2014. PLoS Genet 10, e1004092. PMID: 24453988). The assembling was done following the procedure described by Camacho et al (2019. Genes (Basel) 10, 758; PMID: 31561572). The maxicircle coding regions are indicated by upper letters in the sequences. The archive has fasta format (BioEdit). The WHO codes for the isolates are: CUK1, MHOM/TR/2005/HUM1; CUK4, ITOB/TR/2006/TOB4; CUK12,  ITOB/TR/2007/TOB12
DOI: 10.17632/x2xzx7sgmc
title: Original data for the manuscript entitled "Vapor-deposited digenite in Chang’e-5 lunar soil"

description: The original EDS, EELS, and TEM data for the manuscript entitled "Vapor-deposited digenite in Chang’e-5 lunar soil".
DOI: 10.17632/zkz4db7sgx
title: Database and script

description: recod_base_comp.Rda: database complete and debugged to segment into group 1 and 2 recod_base_1.Rda: segmented database for exploratory factor analysis recod_base_2.Rda: segmented database for confirmatory factor analysis script: script for performing data analysis in R software
DOI: 10.17632/6wxjntp6nz
title: Soil particle size and texture Shaked LTER site, Negev Desert, Israel

description: Weight of sand fractions, g Percentage, % Hydrometer readings Particle Percentage,% Cross-section Shaked LTER site, Negev Desert Israel Biological crusts data summary Shaked LTER site, Negev Desert Israel Hillslope type plot Microhabitat
DOI: 10.17632/pn7scdrzx2
title: Self-protection versus fear of stricter firearm regulations: examining the drivers of firearm acquisitions in the aftermath of a mass shooting. Porfiri et al.

description: These data were used for information-theoretic analysis of State-level firearm acquisitions. The analysis took into consideration the location of mass shootings, media coverage, and firearm-related legal environment. To view the analysis codes, please visit: https://github.com/Dynamical-Systems-Laboratory/Causes-of-firearm-acquisition
DOI: 10.17632/hwnf4zn4tf
title: La construcción material de la montaña mendocina en el campo arquitectónico e ingenieril (1890-1930):  Prácticas y saberes extranjeros 

description: La consolidación del Estado moderno en la Argentina, implicó la aparición de nuevos temas y programas en la disciplina arquitectónica e ingenieril. Sumado a ello, la modernización tecnológica operante desde la llegada del ferrocarril, significó la incorporación de nuevas tecnologías y materiales que, de la mano de inmigrantes (en su mayoría europeos) llegados al país en un contexto favorable que apoyaba su arraigo, revolucionó la construcción material y simbólica del espacio. En Mendoza, esta revolución se tradujo en la incorporación del espacio montañés al esquema productivo que, hasta ese momento, se había orientado predominantemente a la actividad agro-ganadera y agrícola para exportación. En este marco, el artículo problematiza el modo en que la “nueva” mirada de la cordillera cristalizó en la implantación de equipamientos e infraestructuras: centrales hidroeléctricas, hoteles y plantas potabilizadoras; elementos vinculados en el vasto territorio por la línea férrea en los primeros tiempos y luego por la traza caminera. La búsqueda se orienta a la expresión material y tecnológica de estos elementos, tanto desde el accionar de técnicos y profesionales extranjeros que se desempeñaron en las obras, como de empresas de mayor envergadura que operaron sobre el territorio, impactándolo con tecnologías, saberes y prácticas novedosas. Para ello, el estudio se nutre del modelo narrativo histórico, del análisis fotográfico y del análisis de contenido de documentos históricos.
DOI: 10.17632/d82fysk7n6
title: R Status is a Relevant Prognostic Factor for Recurrence and Survival After Pancreatic Head Resection for Ductal Adenocarcinoma

description: Data refer to the paper doi: 10.1245/s10434-020-09467-6
Data were collected in a prospective database maintained at the Division of Pancreatic Surgery, San Raffaele Scientific Institute, Milan, Italy. Patients with a histologic diagnosis of PDAC in the head of the pancreas who underwent pancreatoduodenectomy or total pancreatectomy were eligible for the study. Only patients with a minimum follow-up period of 12 months were included unless they had died within 1 year after surgery because of tumor recurrence
DOI: 10.17632/sn3cdcw9mp
title: Role of trimethylamine metabolite in colon inflammation reveals toxicity at cellular levels

description: The data shows the effects of gut bacterial metabolite, TMA, on intestinal epithelial cell lines (HCT116 and HT29) and animal model. TMA causes compromised membrane integrity, cell cycle arrest and apoptosis in chronic exposure in cell lines and severe inflammation, and damage to the epithelial lining of mice, shortening the large intestine and strengthening the view that TMA is deleterious and might be the contributing factor in microbiota-induced intestinal diseases.
DOI: 10.17632/y23chnzbfj
title: LINF_250023400

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/9y6s3mwwpw
title: Supplementary data for "Low T3 syndrome upon admission and response to nutritional support in malnourished medical inpatients"

description: Supplementary data for "Low T3 syndrome upon admission and response to nutritional support in malnourished medical inpatients"
DOI: 10.17632/ty35tfdhxc
title: Bioactive compound isolation from Uromyrtus metrosideros and their structure characterization 

description: Crude polar extract from Uromyrtus metrosideros leaves was fractionated using RP-HPLC. Absorbance data (at 254 nm) of the crude extract were extracted as "Crude extract HPLC data.csv" and plotted using R script "hplc plots.R". The purity of isolated compounds 1-6 was confirmed using analytical RP-HPLC at 254 nm (Fraction purity HPLC data) and plotted using R script "hplc plots.R" . Elemental analysis, high resolution mass spectrometry and 1D and 2D NMR experiments, namely 1H, 13C APT, 1H-13C HSQC,  1H-1H COSY, 1H-1H TOCSY, 1H-1H HMBC, 1H-1H NOESY were collected and used for structure elucidation (provided in "Compound details.docx" file). Raw NMR experimental data are provided in separate folder for each compound.
DOI: 10.17632/z6s88ymm25
title: Lack of ethylene does not affect reproductive success and synergid cell death in Arabidopsis

description: 
The signaling pathway of the gaseous hormone ethylene is involved in plant reproduction, growth, devel- opment, and stress responses. During reproduction, the two synergid cells of the angiosperm female gametophyte both undergo programmed cell death (PCD)/degeneration but in a different manner: PCD/ degeneration of one synergid facilitates pollen tube rupture and thereby the release of sperm cells, while PCD/degeneration of the other synergid blocks supernumerary pollen tubes. Ethylene signaling was postu- lated to participate in some of the synergid cell functions, such as pollen tube attraction and the induction of PCD/degeneration. However, ethylene-mediated induction of synergid PCD/degeneration and the role of ethylene itself have not been firmly established. Here, we employed the CRISPR/Cas9 technology to knock out the five ethylene-biosynthesis 1-aminocyclopropane-1-carboxylic acid oxidase (ACO) genes and created Arabidopsis mutants free of ethylene production. The ethylene-free mutant plants showed normal triple responses when treated with ethylene rather than 1-aminocyclopropane-1-carboxylic acid, but had increased lateral root density and enlarged petal sizes, which are typical phenotypes of mutants defective in ethylene signaling. Using these ethylene-free plants, we further demonstrated that production of ethylene is not necessarily required to trigger PCD/degeneration of the two synergid cells, but certain com- ponents of ethylene signaling including transcription factors ETHYLENE-INSENSITIVE 3 (EIN3) and EIN3- LIKE 1 (EIL1) are necessary for the death of the persistent synergid cell.
DOI: 10.17632/m7c43ww7fm
title: Data for: A New Approach to Estimating Loss-Given-Default Distribution

description: MATLAB codes used for the numerical analysis in the article "A New Approach to Estimating Loss-Given-Default Distribution" (Masahiko Egami, Rusudan Kevkhishvili)  together with the Excel file of estimation results