cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26037229.v1
title: Supplementary Material for: Migraine Risk in Multiple Sclerosis and Neuromyelitis Optica Spectrum Disorder: A Nationwide Cohort Study in South Korea

description: Introduction: Although the relationship between migraine and multiple sclerosis (MS) has been reported, the risk of migraine in MS and neuromyelitis optica spectrum disorder (NMOSD) is unclear. Therefore, this study investigated the risk of migraine in the Korean MS and NMOSD populations.
Methods: This study analyzed claims data from 1492 patients with MS and 1551 patients with NMOSD based on diagnostic codes in the Korean National Health Insurance Service. Migraine risk was compared with a control group (matched 1:5 for age, sex, and comorbidities) using Cox proportional hazards analysis. Patients aged &lt;20 years and with previous migraine were excluded.
Results: Migraine risk was higher in patients with MS (adjusted hazard ratio [aHR] 1.37; 95% confidence interval [CI]: 1.15−1.62) but did not differ significantly in patients with NMOSD (aHR 1.05; 95%CI: 0.87−1.27) compared to controls. No significant sex-based differences in migraine risk were observed. Patients with NMOSD showed decreasing risk with age (p for interaction=0.040). Comorbidities like hypertension, diabetes, or dyslipidemia did not significantly alter migraine risk in either group.
Conclusion: The study results revealed an increased risk of migraines in patients with MS but not in patients with NMSOD compared with matched controls.
DOI: 10.6084/m9.figshare.28738115.v1
title: Statistics file of raw data

description: By repairing oxidized methionine (Met-SO) residues, methionine sulfoxide reductases (Msrs) play important role in survival and virulence of <i>Salmonella</i> Typhimurium (<i>S.</i> Typhimurium). <i>Salmonella</i> encodes five <i>msr</i>s. Through the generation of single and cumulative deletion mutants (Δ<i>msrA</i>, Δ<i>msrP</i>, Δ<i>msrAC</i>, Δ<i>msrACP</i>, Δ<i>msrACPB</i>, and Δ<i>msrACPBbisC</i>), we analyzed the relative contribution of various <i>msr</i> genes (<i>msrA</i>, <i>msrB</i>, <i>msrC</i>, <i>msrP</i>, and <i>bisC</i>) in oxidative stress survival of <i>S. </i>Typhimurium. We evaluated the effects of <i>msr</i> gene deletion(s) on protein oxidation, survival in immune cells, colonization in poultry organs, and immune responses. The mutant strains exhibited elevated levels of protein aggregation, with the ∆<i>msrACPBbisC</i> strain accumulating the highest levels of protein aggregates. Survival assays in macrophages and dendritic cells demonstrated that the <i>msrA</i>, <i>msrC</i>, and <i>bisC</i> genes play critical roles in proliferation in immune cells, whereas the contribution of <i>msrP</i> is minimal. Mutants are defective in cecal colonization and systemic dissemination to the spleen and liver, the degree of which depends on the number of mutations. One-day-old female White Leghorn chicks were inoculated with <i>msr</i> mutant strains showed modulated humoral as well as cellular immune responses as compared to <i>S. </i>Typhimurium infected counterpart. These findings underscore the critical roles of <i>msr</i> genes in colonization in poultry and modulation of immune responses, and have implications in the design and development of live vaccines against <i>S.</i> Typhimurium for poultry.
DOI: 10.6084/m9.figshare.28776788.v1
title: Supplementary Material for: Urinary myeloid bodies as a biomarker for early diagnosis and monitoring of enzyme replacement therapy in Fabry disease

description: Introduction: The prevalence of urinary myeloid bodies in Fabry disease patients and their correlation with renal involvement remains unclear.
Methods: This single-center, retrospective study included 25 patients with Fabry disease and 27 controls. We analyzed 24-hour urine samples for the presence of urinary myeloid bodies and evaluated clinical data, including serum creatinine, estimated glomerular filtration rate (eGFR), 24-hour urinary protein levels, α-Gal A, and Lyso-GL-3. Seven Fabry patients underwent analysis of urine samples before and after one year of enzyme replacement therapy (ERT). 
Results: Urinary myeloid bodies were detected in 84% of Fabry patients (21 out of 25), with no significant gender differences. None of the healthy controls or patients with other renal disease patients had urinary myeloid bodies. Among the Fabry patients with myeloid bodies, 48% had no proteinuria, and 52% were in CKD1 stage G1. Furthermore, urinary myeloid bodies were detected in four patients under the age of 20, despite the absence of or only minimal proteinuria, and these patients all exhibited a substantial number of myeloid bodies. After one year of ERT, significant reductions in both the count (P=0.043) and area ratio (P=0.028) of myeloid bodies were observed.
Conclusion: Urinary myeloid bodies are specific to Fabry disease and are associated with early renal injury, even in the absence of proteinuria. These findings suggest that urinary myeloid bodies may serve as a non-invasive biomarker for the early diagnosis of Fabry disease and for monitoring the efficacy of ERT.
DOI: 10.17632/f5gsytvrtw
title: Data for: Improving Emergency Call Detection of Out-of-Hospital Cardiac Arrests in the Greater Paris Area: Efficiency of a Global System with a New Method of Detection

description: Excel for analyzis.
DOI: 10.17632/jcr5rgt66j
title: MAUP datasets

description: The data used in the forthcoming “The modifiable areal unit problem in geospatial least-cost electrification modelling” publication. The work describes how different methods of aggregation of population data effects the results produced by the Open Source Spatial Electrification Tool (OnSSET, https://github.com/OnSSET). In the initial study three countries have been assessed: Benin, Malawi and Namibia. The choice of countries is due to their different national population densities and starting electrification rates. The following repository includes three zipped files, one for each country, containing the 26 input files used in the study. These input files are generated with the QGIS tools published in the OnSSET repository (https://github.com/onsset). This data repository also contains a file describing the naming conventions for the results used and the summary files generated with OnSSET. For more information on how to generate these datasets, please refer to the following GitHub repository https://github.com/babakkhavari/MAUP and the corresponding publication (To Be Added)
DOI: 10.17632/sdbzg5xhn9
title: Data for: Inclusion of Asparagopsis armata in lactating dairy cows' diet reduces enteric methane emission by over 50 percent

description: Raw data including dry matter intake, average milk weight, contents of milk fat, protein, lactose, solid-non-fat, milk urea nitrogen, somatic cell counts, methane emission, carbon dioxide emission and hydrogen emission.
DOI: 10.17632/xd9g443btr
title: Predictive models of patient severity in intensive care units based on serum cytokine profiles - study 1

description: Untargeted bottom-up serum proteomics study. Raw data for manuscript "Predictive models of patient severity in intensive care units based on serum cytokine profiles" (in press).
DOI: 10.17632/z8wdg5s3sn
title: Does uncertainty amplify the inflation pass-through of gasoline price shocks?

description: Replication files for the paper "Does uncertainty amplify the inflation pass-through of gasoline price shocks?", published in Energy Economics.
DOI: 10.6084/m9.figshare.14439230.v1
title: 29. ANEXO Nº XXIX “Protocolo de encuesta”

description: ANEXO 29
DOI: 10.6084/m9.figshare.24270766.v1
title: Supplemental Table S3. Means, standard deviations, and correlation coefficients for cardiorespiratory fitness with circadian rhythm variables of the entire sample, stratified by sex (N=18).

description: Supplemental material for Cardiorespiratory Fitness and Circadian Rhythms in Adolescents: A Pilot Study.
DOI: 10.6084/m9.figshare.24473188.v1
title: A high-quality chromosome-level genome assembly of the topmouth culter (<i>Culter alburnus Basilewsky</i>, 1855)

description: Our aim is to find the molecular mechanisms leading to the hypoxic sensitivity of <i>Culter alburnus</i> and the genetic structure and pattern of change in its population
DOI: 10.6084/m9.figshare.28428923.v1
title: Supplementary Material for: RNA-based next-generation sequencing approach to non-small cell lung cancer: A single center experience in Turkey

description: Introduction: Lung cancer is a global health concern. Molecular analysis of tumor tissues, especially in non-small cell lung cancers, has become an integral part of a holistic approach to the management of the disease. Here, molecular genetic data obtained from tumor tissues collected from 373 male and 89 female patients referred to our clinic with a diagnosis of non-small cell lung cancer are presented.
Methods: Patient samples (n=462) were assessed via next-generation sequencing using an RNA-based kit containing 36 genes. Data obtained were analyzed using relevant software, and results of analysis are presented together with the demographic characteristics of the patients.
Results: Significant somatic variations were detected in 208 of 462 patients. KRAS and EGFR had the greatest variations. Rearrangements, mostly involving ALK, were observed in 37 patients, and rare complex changes involving different genes were detected in 10 patients.
Conclusion: This study presents the comprehensive molecular data obtained using an RNA-based kit that provided information on single nucleotide variation (SNV)/insertion-deletion variants (IndDel) and rearrangements in a large patient series from a single center. Somatic variants were detected in approximately 45% of all patients. According to the Catalogue of Somatic Mutations In Cancer (COSMIC) database, our rate of variants detected in KRAS and FGFR3 genes was higher. The rate of variants detected in other genes was lower. In addition, fusions not reported in COSMIC were detected. With the development of next-generation sequencing-based tests and an increase in their use, a broad perspective has been provided to many disease groups, including solid tissue cancers, especially non-small cell lung cancers.
DOI: 10.6084/m9.figshare.12446123.v1
title: JARVIS-FD-ELAST (JVASP-10 to JVASP-11273)

description: Finite difference based elastic constant calculations in JARVIS-DFT
DOI: 10.6084/m9.figshare.3513920.v1
title: Appendix A. Data and sources.

description: Data and sources.
DOI: 10.6084/m9.figshare.5666611.v1
title: Measurement and modeling of simplified trees for daylighting computer simulation

description: Abstract Predicting the effect of arboreal vegetation on daylight performance is a complex and difficult task as it depends on accurately simulating the passage of light through its canopy. Variables such as leaf size, shape, reflectance and transparency, among others, should be considered. Thus, modeling a tree exactly simulating the real situation is impractical, not only because of the quantity and complexity of the variables, but also because of the overload of the model. In this context, the main aims of this research are: to improve the way of measuring the permeability of arboreal vegetation to daylight, which we call the "canopy gap fraction", using hemispherical photography and image analysis; and apply these measurements in simplified three-dimensional digital models to use in computational daylight simulations. Three digital models, namely "blinds", "translucent", and "gaps" were developed, simulating four tree species. The actual and simulated light levels of each one were compared and validated according to the relative MBE and RMSE indicators. The "gap" tree model, for example, was especially suitable for the Pitombeira and Carolina tree species, with relative MBE values of 0.21 and -0.12, as well as relative RMSE values of 0.02 and 0.03, respectively, proving the relevance of the developed method.
DOI: 10.17632/zgf4p85pwx
title: WannSymm: A symmetry analysis code for Wannier orbitals

description: We derived explicit expressions of symmetry operators on Wannier basis, and implemented these operators in WannSymm software. Based on this implementation, WannSymm can i) symmetrize the real-space Hamiltonian output from Wannier90 code, ii) generate symmetry operators of the little group at a specific k-point, and iii) perform symmetry analysis for Wannier band structure. In general, symmetrized Hamiltonians yield improved results compared with the original ones when they are employed for nodal structure searching, surface Green's function calculations, and other model calculations.
DOI: 10.6084/m9.figshare.11372037.v1
title: Data & Code: "Opposing macroevolutionary and trait-mediated patterns of threat and naturalization in flowering plants"

description: Data & Code for Schmidt et al: "Opposing macroevolutionary and trait-mediated patterns of threat and naturalization in flowering plants" Ecology Letters (2021)<br>Includes data, Stan model outputs, and .Rmd file to reproduce analyses and basic figures. <br>
DOI: 10.6084/m9.figshare.16611565.v1
title: AML ABseq sorts Figure 1

description: AML ABseq sorts Figure 1<br>Caspase 3/7 and DAPI negative CD34+ cells were gated in order to sort CD34+ and CD34- BM<br>
DOI: 10.6084/m9.figshare.21785882.v3
title: Supplementary data for the food-water-energy nexus and green roofs in Sao Jose dos Campos, Brazil, and Johannesburg, South Africa

description: Supplementary data related to the study "the food-water-energy nexus and green roofs in Sao Jose dos Campos, Brazil, and Johannesburg, South Africa".
DOI: 10.6084/m9.figshare.23608797.v1
title: Narang et. al. - Data Sharing for Pediatric Clinical Trials Funded by the US National Institutes of Health

description: This dataset contains the data used for the analysis in the article "Data Sharing for Pediatric Clinical Trials Funded by the US National Institutes of Health", published in <em>JAMA Network Open.</em>2023;6(7):e2325342.doi:10.1001/jamanetworkopen.2023.25342.
DOI: 10.6084/m9.figshare.27823732.v1
title: Additional file 3 of Serum microRNA qPCR profiling and validation indicate upregulation of circulating miR-145-5p and miR-26a-5p in migraineurs

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.28816250.v1
title: Multiomics analysis on polyamine metabolisms in colorectal cancer indicates important contribution of impaired anti-tumor activities of CXCR6<sup>+</sup>CD8<sup>+</sup>T cells by the extracellular putrescine

description: 重建模型，每组随机给予 3 个冒号。如前所述，提取固有层 （LPMC）。使用 RWD 肠道消化试剂盒 （DHIE-5007） 分离结肠中的全细胞。根据制造商的说明，利用 SeekOne® 数字液滴单细胞 3' 转录组试剂盒（SeekOne，北京）以 1：1 的比例组合 LPMC 和全细胞，以创建用于下游构建 scRNA-seq 文库的单细胞悬液。scRNA-seq 文库是在 Novogene（Co. Ltd.，中国北京）开发的。原始读取的处理遵循与上一中描述的相同的协议。R 软件中的下游分析（包括质量过滤器、聚类注释和 DEG）与上述相同。
DOI: 10.17632/p8psw7mfd8
title: Supplementary material

description: Supplementary material on the thesis
DOI: 10.17632/wyb9pmtjsm
title: INFLUENCE OF COST LEADERSHIP, DIFFERENTIATION AND FOCUSED STRATEGIES ON FIRMS’ COMPETITIVENESS-THE CASE OF AKBF KANDAHAR

description: This Study Covers and Explores the Cost Leadership, Differentiation, and Focused Strategies on Firms’ Competitiveness within Kandahar Province. the purpose of this study is to determine the influence of Cost Leadership, Differentiation and Focused Strategies on Firm’s Competitiveness in Kandahar Province. The study will concentrate on the influence of Cost Leadership, Differentiation and Focused Strategies on Firms’ Competitiveness. This is a quantitative research and the data for the research have been collected from Primary and Secondary Sources respectively. Primary data have been collected by well-established and circulated questionnaire (x156) and secondary data have been collected from journals, books, chapter notes, and well known internet websites. The data is analyzed by IBM SPSS Statistics Program after collection for deriving the required results and drawing viable conclusions accordingly. The research involved detailed review of published and unpublished literature relevant to the study. The data used within the research is collected from both Primary and Secondary Sources of data. Primary data is collected from well design and structured 5 Point Likert Scale Questionnaire, which is distributed to x156 employees of the AKBF, and Secondary Data is collected from well-known and controlled internet websites, books, journals and chapter notes. The data is Categorized and analyzed in IBM SPSS Statistics after collection in order to draw viable conclusions for the study. The findings of the research conducted that Cost Leadership, Differentiation and Focused Strategies have significance influence and impact on firm’s competitiveness.
DOI: 10.6084/m9.figshare.19130096.v1
title: Dataset 1.csv

description: Theoretical values of the peak reflection coefficient for ideal multilayer structure of Ru/Y
DOI: 10.6084/m9.figshare.6269021.v1
title: Supplementary Material for: Bidirectional Connections between Depression and Ataxia Severity in Spinocerebellar Ataxia Type 3 Patients

description: <b><i>Background:</i></b> Spinocerebellar ataxia type 3 (SCA3), which is the most common subtype of SCA worldwide, exhibits common neuropsychological symptoms such as depression. However, the contribution of depression to the severity of SCA3 has not yet been thoroughly investigated. <b><i>Methods:</i></b> The present study investigated the prevalence of depression using Beck depression inventory in 104 molecularly conﬁrmed SCA3 patients from China. The putative risk factors for depression and whether the depression could affect the severity of ataxia were established by multivariable linear regression models. <b><i>Results:</i></b> The frequency of depression in the study subjects was 57.69% (60/104), which was higher than that in SCA3 patients from a subset of other populations. The gender (<i>p</i> = 0.03) and severity (<i>p</i> &lt; 0.01) of ataxia were those risk factors that could affect depression. Conversely, depression (<i>p</i> &lt; 0.01) together with the duration (<i>p </i>&lt; 0.01) of SCA3 could also play a positive role in the severity of ataxia. <b><i>Conclusions:</i></b> The extremely common depression results from motor disability caused by ataxia; it also affects the disease severity of SCA3. These findings suggested that depression was a part of neurodegeneration in SCA3 and necessitated intensive focus and interventions while caring for SCA3 patients.
DOI: 10.17632/8wvw36pdcp
title: Supplement 2 and 3 - Improved patient satisfaction and overall experience in the post-operative period utilizing visual education on wound healing for primary closures: A prospective cohort study

description: Supplement 2 and 3 - Educational Materials
DOI: 10.17632/rz9rs8cpws
title: Optimized implementation for calculation and fast-update of Pfaffians installed to the open-source fermionic variational solver mVMC

description: In this article, we present a high performance, portable and well templated implementation for computing and fast-updating Pfaffian and inverse of an even-ranked skew-symmetric (antisymmetric) matrix. It is achieved with a skew-symmetric, blocked variant of the Parlett-Reid algorithm and a blocked update scheme based on the Woodbury matrix identity. Installation of this framework into the geminal-wavefunction-based many-variable Variational Monte Carlo (mVMC) code boosts sampling performance to up to more than 6 times without changing Markov chain's behavior. The implementation is based on an extension of the BLAS-like instantiation software (BLIS) framework which has optimized kernel for many state-of-the-art processors including Intel Skylake-X, AMD EPYC Rome and Fujitsu A64FX.
DOI: 10.6084/m9.figshare.22777184.v1
title: Data repository for "Bridging the gap between airborne and spaceborne imaging spectroscopy for mountain glacier surface property retrievals" in Remote Sensing of Environment (2023).

description: This repository contains the Airborne Coastal Observatory data used in the study.1)The baseline 2 m ACO retrievals (i.e., broadband albedo, grain size, radiative forcing by LAPs) for both flight dates.2) The coincidentally collected 2 m ACO DEMs for both flight dates.The Copernicus global DEM is distributed by Open Topography (https://opentopography.org).The Imaging Spectroscopy Snow and Ice Algorithm (ISSIA) is available as a MATLAB script on GitHub (https://github.com/donahuechristopher/ISSIA). The lookup talbes needed to run this code are located in ISSIA_LUT.zip. Additionally, there is an example ACO flight line provided, that has all the necessary ATCOR-4 output files needed to run the script (example_ACO_ISSIA_dataset.zip).
DOI: 10.6084/m9.figshare.28520108.v1
title: PARAFAC model info and loadings

description: This excel file contains information about model development, validation, loadings, and FMAX of each component for each sample.
DOI: 10.6084/m9.figshare.7742759.v1
title: Dataset of residential buildings performance, construction, geometry, and ventilation for sixteen mediterranean locations

description: This dataset comprises the performance, construction, geometry, and ventilation data of residential buildings for 16 climate regions. 500 residential buildings have different ventilation parameters for air changes per hour, and indoor minimum temperature and delta temperature for window opening, for each climate location (totalizing 1080 thousand buildings). The climate regions are CYP_Larnaca, DZA_Algiers, EGY_Alexandria, ESP_Malaga, ESP_Valencia, FRA_Marseille, GRC_Athens, ISR_TelAviv, ITA_Naples, ITA_Venice, LBY_Tripoli, MAR_Casablanca, MNE_Podgorica, TUN_Tunis, TUR_Istanbul, and TUR_Izmir, available at the Department of Energy (URL https://energyplus.net/weather). The geometric data was generated using the EPSAP algorithm (URL http://dx.doi.org/10.1016/j.cad.2013.01.001; http://dx.doi.org/10.1016/j.cad.2013.01.003; http://dx.doi.org/10.1016/j.autcon.2013.06.005); the construction elements physical properties were saved from the EPSAP algorithm database; and, the performance data was obtained using the FPOP algorithm coupled to the simulation engine EnergyPlus v8.8.0 (URL http://dx.doi.org/10.1016/j.enbuild.2014.06.016; http://dx.doi.org/10.1016/j.apenergy.2014.06.068).
DOI: 10.17632/3cxb7474nj
title: RESPACK: An ab initio tool for derivation of effective low-energy model of material

description: RESPACK is a first-principles calculation software for evaluating the interaction parameters of materials and is able to calculate maximally localized Wannier functions, response functions based on the random phase approximation and related optical properties, and frequency-dependent electronic interaction parameters. RESPACK receives its input data from a band-calculation code using norm-conserving pseudopotentials with plane-wave basis sets. Automatic generation scripts that convert the band-structure results to the RESPACK inputs are prepared for xTAPP and Quantum ESPRESSO. An input file for specifying the RESPACK calculation conditions is designed pursuing simplicity and is given in the Fortran namelist format. RESPACK supports hybrid parallelization using OpenMP and MPI and can treat large systems including a few hundred atoms in the calculation cell.