cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pzrxsg
title: Occurrence Download

description: A dataset containing 6260 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cygnus olor",
 "Country is Slovenia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6260 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084542-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rddkf7
title: Occurrence Download

description: A dataset containing 281 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pulvinaria hydrangeae",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 281 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084541-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rf8qcs
title: Occurrence Download

description: A dataset containing 21297 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aedes triseriatus"
 ]
}

 The dataset includes 21297 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085072-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21979/n9/eki4ri
title: Replication Data for: Observation of Photonic Antichiral Edge States

description: Replication Data for: Observation of Photonic Antichiral Edge States
DOI: 10.13130/rd_unimi/jmksaw/dozt3h
title: 10.0_0.0_neigh.html

description: :unav
DOI: 10.6084/m9.figshare.25680309
title: Diversity of culturable fungi in six Tibetan Plateau lakes, with descriptions of eight new taxa

description: The combination of low temperatures, oligotrophic conditions, high altitude, and varying salinity in Tibetan Plateau lakes endows them with a wealth of distinctive fungal resources. This study aimed to investigate the diversity of culturable fungi in sediment and water samples collected from six lakes located on the Tibetan Plateau at elevations above 4,500 m. A total of 843 fungal strains were isolated by dilution plate method using four different media. Initial ITS analyses revealed that they belong to 156 species across 83 genera, spanning 50 families, 26 orders, 12 classes, and 6 phyla. Further morphological and multi-locus phylogenetic analyses were conducted, resulting in the formal descriptions of a new genus, <i>Xizangia</i>, and seven new species, including <i>Alternaria xizangensis</i>, <i>Emericellopsis ovoidea</i>, <i>Myceliophthora xizangica</i>, <i>Preussia cylindricalis</i>, <i>Preussia sedimenticola</i>, <i>Pseudeurotium sedimenticola</i>, and <i>Xizangia sedimenticola</i>. This research provides insights into the biodiversity of culturable fungi in the unique and extreme ecosystem, shedding light on the potential discovery of novel species and genera.
DOI: 10.6084/m9.figshare.25680309.v1
title: Diversity of culturable fungi in six Tibetan Plateau lakes, with descriptions of eight new taxa

description: The combination of low temperatures, oligotrophic conditions, high altitude, and varying salinity in Tibetan Plateau lakes endows them with a wealth of distinctive fungal resources. This study aimed to investigate the diversity of culturable fungi in sediment and water samples collected from six lakes located on the Tibetan Plateau at elevations above 4,500 m. A total of 843 fungal strains were isolated by dilution plate method using four different media. Initial ITS analyses revealed that they belong to 156 species across 83 genera, spanning 50 families, 26 orders, 12 classes, and 6 phyla. Further morphological and multi-locus phylogenetic analyses were conducted, resulting in the formal descriptions of a new genus, <i>Xizangia</i>, and seven new species, including <i>Alternaria xizangensis</i>, <i>Emericellopsis ovoidea</i>, <i>Myceliophthora xizangica</i>, <i>Preussia cylindricalis</i>, <i>Preussia sedimenticola</i>, <i>Pseudeurotium sedimenticola</i>, and <i>Xizangia sedimenticola</i>. This research provides insights into the biodiversity of culturable fungi in the unique and extreme ecosystem, shedding light on the potential discovery of novel species and genera.
DOI: 10.6084/m9.figshare.27636912
title: CAP superfamily proteins (VdPRYs) manipulate plant immunity and contribute to the virulence of <i>Verticillium dahliae</i>

description: CAP (cysteine-rich secretory proteins, antigen5, pathogenesis-related proteins) superfamily proteins are widely distributed, can be subdivided into 11 subfamilies, and form a unique branch in fungi, named PRY proteins. <i>Verticillium dahliae</i> is a soil-borne fungal pathogen of vascular plants that causes plant Verticillium wilt. However, the roles of CAP superfamily proteins in this fungus is unclear. Here, four CAP superfamily members with a conserved domain were identified in <i>V. dahliae</i>: VdPRY1, VdPRY2, VdPRY3, and VdPRY4. VdPRY1 and VdPRY3 were found to be key in suppressing plant immune responses. Moreover, these four members are highly expressed during early infection of cotton by <i>V. dahliae</i>. Deleting <i>VdPRY1</i>, <i>VdPRY2</i>, or <i>VdPRY3</i> reduced the fungus’s ability to cause disease, but <i>VdPRY4</i> deletion did not affect virulence. Deletion of any of four members did not impact fungal growth or carbon source use. Yeast two-hybrid experiments suggest that these proteins may function through interactions with each other. This investigation has, for the initial time, elucidated the pivotal roles of <i>V. dahliae</i> CAP superfamily proteins in inhibiting plant immunity and exerting virulence during interaction with the host plant.
DOI: 10.6084/m9.figshare.27636912.v1
title: CAP superfamily proteins (VdPRYs) manipulate plant immunity and contribute to the virulence of <i>Verticillium dahliae</i>

description: CAP (cysteine-rich secretory proteins, antigen5, pathogenesis-related proteins) superfamily proteins are widely distributed, can be subdivided into 11 subfamilies, and form a unique branch in fungi, named PRY proteins. <i>Verticillium dahliae</i> is a soil-borne fungal pathogen of vascular plants that causes plant Verticillium wilt. However, the roles of CAP superfamily proteins in this fungus is unclear. Here, four CAP superfamily members with a conserved domain were identified in <i>V. dahliae</i>: VdPRY1, VdPRY2, VdPRY3, and VdPRY4. VdPRY1 and VdPRY3 were found to be key in suppressing plant immune responses. Moreover, these four members are highly expressed during early infection of cotton by <i>V. dahliae</i>. Deleting <i>VdPRY1</i>, <i>VdPRY2</i>, or <i>VdPRY3</i> reduced the fungus’s ability to cause disease, but <i>VdPRY4</i> deletion did not affect virulence. Deletion of any of four members did not impact fungal growth or carbon source use. Yeast two-hybrid experiments suggest that these proteins may function through interactions with each other. This investigation has, for the initial time, elucidated the pivotal roles of <i>V. dahliae</i> CAP superfamily proteins in inhibiting plant immunity and exerting virulence during interaction with the host plant.
DOI: 10.13130/rd_unimi/jmksaw/af3hub
title: 3.0_0.0_neigh.html

description: :unav
DOI: 10.6084/m9.figshare.27628499
title: The P-type calcium pump Spf1 regulates immune response by maintenance of the endoplasmic reticulum-plasma membrane contacts during <i>Candida albicans</i> systemic infection

description: Spf1 is an important P-type ATPase in <i>Candida albicans</i>, which functions as an endoplasmic reticulum calcium pump to maintain calcium homoeostasis. The deficiency of Spf1 attenuates the virulence of <i>C. albicans</i>. However, its impact on immune response remains to be investigated. This study discovered that deletion of <i>SPF1</i> resulted in a reduction of endoplasmic reticulum-plasma membrane contacts, an important structure mediating material and information exchange. This effect was attributed to the reduced plasma membrane localisation of the crucial endoplasmic reticulum-plasma membrane tethering proteins Ist2 and Tcb1/3. The reduction of the contacts led to a decrease in secretion of the virulence factors phospholipase, secreted aspartyl protease (SAP), candidalysin, and the cell wall-anchored protein Hwp1 during infection. Immunofluorescence staining and quantitative PCR assays further showed that the <i>SPF1</i> deletion led to a remarkable decrease in the levels of pro-inflammatory cytokines, suggesting the alleviation of the fungus-induced inflammatory response. Ultimately, the regulatory role of Spf1 in immune response significantly weakened the infectivity of <i>C. albicans</i>, and increased the survival rate of the hosts. This finding elucidated the role of fungal calcium pump-governed endoplasmic reticulum-plasma membrane contacts in regulation of immune response. It also makes it possible to regulate the host’s immune response via control of <i>SPF1</i> expression and functions, providing a theoretical basis for treating fungal infections.
DOI: 10.6084/m9.figshare.27628499.v1
title: The P-type calcium pump Spf1 regulates immune response by maintenance of the endoplasmic reticulum-plasma membrane contacts during <i>Candida albicans</i> systemic infection

description: Spf1 is an important P-type ATPase in <i>Candida albicans</i>, which functions as an endoplasmic reticulum calcium pump to maintain calcium homoeostasis. The deficiency of Spf1 attenuates the virulence of <i>C. albicans</i>. However, its impact on immune response remains to be investigated. This study discovered that deletion of <i>SPF1</i> resulted in a reduction of endoplasmic reticulum-plasma membrane contacts, an important structure mediating material and information exchange. This effect was attributed to the reduced plasma membrane localisation of the crucial endoplasmic reticulum-plasma membrane tethering proteins Ist2 and Tcb1/3. The reduction of the contacts led to a decrease in secretion of the virulence factors phospholipase, secreted aspartyl protease (SAP), candidalysin, and the cell wall-anchored protein Hwp1 during infection. Immunofluorescence staining and quantitative PCR assays further showed that the <i>SPF1</i> deletion led to a remarkable decrease in the levels of pro-inflammatory cytokines, suggesting the alleviation of the fungus-induced inflammatory response. Ultimately, the regulatory role of Spf1 in immune response significantly weakened the infectivity of <i>C. albicans</i>, and increased the survival rate of the hosts. This finding elucidated the role of fungal calcium pump-governed endoplasmic reticulum-plasma membrane contacts in regulation of immune response. It also makes it possible to regulate the host’s immune response via control of <i>SPF1</i> expression and functions, providing a theoretical basis for treating fungal infections.
DOI: 10.6084/m9.figshare.27044870
title: Large-scale phylogenomic insights into the evolution of the Hymenochaetales

description: The Hymenochaetales is an order with most species as wood-inhabiting fungi that have high phylogenetic complexity and morphological diversity. Species in this order play important roles in forest ecosystems and include wood decomposers, pathogens, and those that form ectomycorrhizal associations. However, we have limited knowledge of the patterns of large-scale evolutionary history of the order. In this study, using 171 genomes, including 113 newly assembled, we reconstructed the phylogenomic relationships, divergence times, biogeographic patterns, morphological evolution of basidiomata, and patterns of speciation/extinction in the Hymenochaetales. The phylogenomic relationships of 12 families within the Hymenochaetales suggested that 10 families can be accepted, and 2 families rejected. Molecular clock dating analyses suggested that the Hymenochaetales possibly started a rapid family-wide and genus-wide radiation during the early Cretaceous to late Jurassic and Cretaceous, respectively. Reconstruction of the ancestral state implied that Hymenochaetales probably originated from the temperate regions of Asia, with the basidiomata of the common ancestor likely being a corticioid species that rapidly transformed between the early Cretaceous and late Jurassic, coinciding with radiations at the family level. Furthermore, we detected a gradually increasing trend of speciation, extinction, and net diversification rates. We provided large-scale genomes of the Hymenochaetales and revealed evolutionary history patterns, which are key to understanding the evolution of fungi.
DOI: 10.6084/m9.figshare.27044870.v1
title: Large-scale phylogenomic insights into the evolution of the Hymenochaetales

description: The Hymenochaetales is an order with most species as wood-inhabiting fungi that have high phylogenetic complexity and morphological diversity. Species in this order play important roles in forest ecosystems and include wood decomposers, pathogens, and those that form ectomycorrhizal associations. However, we have limited knowledge of the patterns of large-scale evolutionary history of the order. In this study, using 171 genomes, including 113 newly assembled, we reconstructed the phylogenomic relationships, divergence times, biogeographic patterns, morphological evolution of basidiomata, and patterns of speciation/extinction in the Hymenochaetales. The phylogenomic relationships of 12 families within the Hymenochaetales suggested that 10 families can be accepted, and 2 families rejected. Molecular clock dating analyses suggested that the Hymenochaetales possibly started a rapid family-wide and genus-wide radiation during the early Cretaceous to late Jurassic and Cretaceous, respectively. Reconstruction of the ancestral state implied that Hymenochaetales probably originated from the temperate regions of Asia, with the basidiomata of the common ancestor likely being a corticioid species that rapidly transformed between the early Cretaceous and late Jurassic, coinciding with radiations at the family level. Furthermore, we detected a gradually increasing trend of speciation, extinction, and net diversification rates. We provided large-scale genomes of the Hymenochaetales and revealed evolutionary history patterns, which are key to understanding the evolution of fungi.
DOI: 10.13130/rd_unimi/jmksaw/dvwp3p
title: Distance.Boundary_div.tab

description: :unav
DOI: 10.13130/rd_unimi/jmksaw/idsb7o
title: 4.0_0.0_neigh.html

description: :unav
DOI: 10.21233/x4ff-mn89
title: Birnau Scheuerhalde pollen dataset

description: Raw data for the Birnau Scheuerhalde pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/h2jv-rn21
title: Little Blue Creek Reservoir diatom dataset

description: Raw data for the Little Blue Creek Reservoir diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.6zb4fk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Database of Vascular Plants of Canada (VASCAN)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026640-250426092105405/datasets/export for details.
DOI: 10.21233/b7sc-4515
title: Framboise Bog testate amoebae dataset

description: Raw data for the Framboise Bog testate amoebae dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/8324-1x48
title: Four Mile Billabong pollen dataset

description: Raw data for the Four Mile Billabong pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.15389656
title: 20250319_Lorenz_mzml
DOI: 10.5281/zenodo.15389657
title: 20250319_Lorenz_mzml
DOI: 10.21233/fnde-pz16
title: Swan Pond diatom dataset

description: Raw data for the Swan Pond diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/3zty-a768
title: 39BR201 macroinvertebrate dataset

description: Raw data for the 39BR201 macroinvertebrate dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/sfw8-jd76
title: Catfish Pocosin testate amoebae surface sample dataset

description: Raw data for the Catfish Pocosin testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/22f5-6565
title: NLA06608-1510 water chemistry dataset

description: Raw data for the NLA06608-1510 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.etm3gz
title: Occurrence Download

description: A dataset containing 1074915 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Luscinia megarhynchos C.L.Brehm, 1831"
 ]
}

 The dataset includes 1074915 records from 3906 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026633-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z9rk74
title: Occurrence Download

description: A dataset containing 14310 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Platalea minor Temminck & Schlegel, 1849",
 "Year 2015-2025"
 ]
}

 The dataset includes 14310 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008006-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25914/ztfs-yk41
title: BARPA-R ACCESS-CM2 SSP1.26 Convective Parameters Product
DOI: 10.6084/m9.figshare.29092511
title: BigWig files filtered for reads properly paired to restriction fragments

description: BigWig files for the read pile-ups of all samples with properly paired reads to restriction enzyme fragment termini
DOI: 10.15468/dl.gj8s6b
title: Occurrence Download

description: A dataset containing 3387 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lysiloma divaricatum (Jacq.) J.F.Macbr.",
 "BasisOfRecord is one of (Specimen, Fossil, Material sample, Material citation)"
 ]
}

 The dataset includes 3387 records from 141 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010742-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10890741
title: Beaver territory locations in Flanders 2014-2019

description: Data compiled by the Agency For Nature and Forest (ANB) on beaver territories in Flanders (Belgium) as reported by various persons and organisations. The dataset was compiled over the years 2014-2019. This version also presents the situation in 2019 and contains geographical coordinates (WGS84) for each territory, the year in which the territory was first reported and whether or not the territory was still occupied by beavers in 2019.
DOI: 10.5281/zenodo.10890740
title: Beaver territory locations in Flanders 2014-2022

description: Data compiled by the Agency For Nature and Forest (ANB) on beaver territories in Flanders (Belgium) as reported by various persons and organisations. A first version of this dataset was compiled over the years 2014-2019. This second version also includes the situation up to 2022. The dataset contains geographical coordinates (WGS84) for each territory, the year in which the territory was first reported and the years thereafter in which this territory was occupied.
DOI: 10.5281/zenodo.13928905
title: Beaver territory locations in Flanders 2014-2022

description: Data compiled by the Agency For Nature and Forest (ANB) on beaver territories in Flanders (Belgium) as reported by various persons and organisations. A first version of this dataset was compiled over the years 2014-2019. This second version also includes the situation up to 2022. The dataset contains geographical coordinates (WGS84) for each territory, the year in which the territory was first reported and the years thereafter in which this territory was occupied.
DOI: 10.15468/dl.f9fsc8
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Poa ×taurica H.N.Pojark.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0294060-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f9hq87
title: Occurrence Download

description: A dataset containing 658 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salix silesiaca Willd.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 658 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0289651-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f9j3wc
title: Occurrence Download

description: A dataset containing 782 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crocus reticulatus Steven ex Adams",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 782 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0294780-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.