cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3623741_d2
title: Additional file 3: Table S3. of A pilot study to compare the detection of HPV-16 biomarkers in salivary oral rinses with tumour p16INK4a expression in head and neck squamous cell carcinoma patients

description: Summary of results for the detection of HPV-16-specific DNA and RNA in oral rinse of patients with p16INK4a-negative HNSCC (XLSX 38Â kb)
DOI: 10.17863/cam.43380
title: VisTexRes: Visibility thresholds for Texture Resolution

description: The dataset contains rendered images using textures of varying resolution and the thresholds at which the artefacts due to the reduction of resolution become visible. See the README.txt file for more information. This dataset was collected as a part of the project reported in the paper: Selecting texture resolution using a task-specific visibility metric Krzysztof Wolski, Daniele Giunchi, Shinichi Kinuwaki, Piotr Didyk, Karol Myszkowski, Anthony Steed and Rafał K. Mantiuk. Proc. of Pacific Graphics / Computer Graphics Forum, 2019 Project web-site: https://texture-metrics.mpi-inf.mpg.de/
DOI: 10.17863/cam.5868
title: Research data supporting “Source Sentence Simplification for Statistical Machine Translation”

description: This data set contains subsets of English-German test sets from the Workshop for Machine Translation (WMT) which have been annotated with manual text simplification information on the source side in the form of gap begin and gap end symbols (, ). The data was tokenized and truecased using the processing scripts distributed with the Moses SMT system. The source simplifications were produced by workers recruited on the crowdsourcing platform Crowdflower (https://www.crowdflower.com). We asked workers to simplify a sentence by deleting words and punctuation, while trying to retain the most important information in the shortened sentence. Their performance was controlled using test questions and a second Crowdflower task which asked workers to identify bad simplifications from the first task. The outcomes of the second task were aggregated by combining an agreement score and the average worker trust score for each simplification. We selected randomly from the remaining simplifications with a combined score of at least 0.5.
DOI: 10.17863/cam.11019
title: Research data supporting "Pharmaceutical film coating catalogue for spectral-domain optical coherence tomography"

description: The data set contains the optical coherence tomography images presented in the publication.
DOI: 10.17863/cam.109073
title: Research Data Supporting: "Conversion of rainforest to both traditional and industrial oil palm systems changes the biodiversity, web-building, and prey capture of understory spiders (Liberia, West Africa)"

description: Datasets associated with accepted manuscript "Conversion of rainforest to both traditional and industrial oil palm systems changes the biodiversity, web-building, and prey capture of understory spiders (Liberia, West Africa)", recently accepted for publication in Agriculture, Ecosystems, and Environment. Datasets are from field-based data collection, occurring in ecological monitoring plots in areas of rainforest, community-managed agriculture, and industrial oil palm plantations in Sinoe County, Liberia. All spider data were collected using transect-based approaches, and include data on spider biodiversity (abundance, species richness, species-level composition), web-building, and prey capture.
DOI: 10.6084/m9.figshare.c.3623795_d2
title: Additional file 5: of Assessment of an automated capillary system for Plasmodium vivax microsatellite genotyping

description: Differences between labelled and unlabelled primers of Microsatellite 9.
DOI: 10.6084/m9.figshare.c.3623795_d3
title: Additional file 1: of Assessment of an automated capillary system for Plasmodium vivax microsatellite genotyping

description: Microsatellites analyzed: chromosomal location, motif, and primers.
DOI: 10.6084/m9.figshare.c.3623801_d2
title: Additional file 4: Table S3. of SABRE: a method for assessing the stability of gene modules in complex tissues and subject populations

description: Pihur reference module sets. (CSV 701 bytes)
DOI: 10.6084/m9.figshare.c.3623795_d4
title: Additional file 4: of Assessment of an automated capillary system for Plasmodium vivax microsatellite genotyping

description: QIAxcel analysis of microsatellites 9 and 15 revealed too many alleles due to imprecision.
DOI: 10.6084/m9.figshare.c.3623801_d3
title: Additional file 3: Table S2. of SABRE: a method for assessing the stability of gene modules in complex tissues and subject populations

description: WGCNA reference module sets. (CSV 550 bytes)
DOI: 10.6084/m9.figshare.c.3623795_d5
title: Additional file 6: of Assessment of an automated capillary system for Plasmodium vivax microsatellite genotyping

description: Differences between labelled and unlabelled primers of Microsatellite 15.
DOI: 10.6084/m9.figshare.c.3623795_d6
title: Additional file 3: of Assessment of an automated capillary system for Plasmodium vivax microsatellite genotyping

description: Comparison of allele sizes using QIAxcel vs ABI Instruments.
DOI: 10.6084/m9.figshare.c.3623801_d5
title: Additional file 7: Table S5. of SABRE: a method for assessing the stability of gene modules in complex tissues and subject populations

description: Pathway over-representation analysis results for the WGCNA and Chaussabel modules sets. For each module identification strategy and module in turn, we carried out pathway over-representation analysis against the Broad Instituteâ  s MSigDB collections by comparing the gene set and module membership using a simple hypergeometric test. We report both p-value and false discovery rate adjusting for multiple comparisons using the Benjamini-Hochberg procedure. (CSV 196Â kb)
DOI: 10.6084/m9.figshare.c.3623801_d6
title: Additional file 5: Table S4. of SABRE: a method for assessing the stability of gene modules in complex tissues and subject populations

description: Chaussabel reference module sets. (CSV 497 bytes)
DOI: 10.6084/m9.figshare.c.3623816_d3
title: Additional file 5: Table S1. of The intracellular plasma membrane-connected compartment in the assembly of HIV-1 in human macrophages

description: Quantitation of virus buds and membrane lengths for cryosections of monocyte-derived macrophages (MDMs) infected with budding-arrested HIV mutants. MDMs from four different donors were infected with the HIV-1 R3A mutants PTAP− or PTAP−YP−, and infected MDMs located by on-grid immunolabelling. Electron microscopy images were recorded and analysed by counting the number of virus buds seen either at the cell surface or within intracellular plasma membrane-connected compartments (IPMCs). Lengths of surface or IPMC membrane within the sections were measured by tracing (see Methods). Data from all of the cells summarised in Table 1. (XLSX 46 kb)
DOI: 10.17863/cam.12827
title: Data supporting publication "Probabilistic thresholding of functional connectomes: application to schizophrenia"

description: There are two files supporting this publication. The first is a .zip file containing six .mat files, which include all variables necessary to reproduce the main findings of the publication. The second is a Microsoft Word document describing 1) how the data was collected and processed and 2) all the variables stored in the .mat files.
DOI: 10.17863/cam.99586
title: Research data supporting "Stratified inclined duct: direct numerical simulations"

description: Three-dimensional DNS data and associated movies (gifs) for the five main cases B2, B5, B6, B8 and B10 in the paper "Stratified inclined duct: direct numerical simulations". The reservoirs have been cropped out so that only the duct domain is kept, i.e. (x,y,z) \in [-30,30]x[-1,1]x[-1,1]. Each dataset B2, B5, B6, B8, B10 consists of 46 snapshots starting at t=80 (after any initial transients) and until 260, spaced by 4 (nondimensional advective time units). B2-B8 are provided at the resolution 925*65*121 (as in Table 1 of the paper, noting only the duct is kept, without reservoirs). B10 is provided at 1285*65*145 (given the higher Re=1000). Additionally we provide the high-resolution version of B10 at 2571*121*121 (as in Table 1), but at a reduced temporal resolution (16 snapshots from t=80 to 260 spaced by 12). Please contact the authors directly if you wish to obtain data at a higher temporal resolution or other data discussed in the paper.
DOI: 10.17863/cam.89684
title: Research data supporting "Emergence of isotropy and dynamic scaling in 2D wave turbulence in a homogeneous Bose gas"

description: The 'Figure' folders contain the source data for data points shown in the corresponding figures in the manuscript. The readme files provided include the necessary information to interpret and use the data.
DOI: 10.17863/cam.74947
title: Research data supporting "Ultra-high field neuroimaging reveals fine-scale processing for 3D perception"

description: Binocular disparity provides critical information about three-dimensional (3D) structure to support perception and action. The past decade has seen significant progress in uncovering human brain areas engaged in the processing of binocular disparity signals. Yet, the fine-scale brain processing underlying 3D perception remains unknown. Here, we use ultra-high field (7T) functional imagining at sub-millimetre resolution to examine fine-scale BOLD-fMRI signals involved in 3D perception. In particular, we sought to interrogate the local circuitry involved in disparity processing by sampling fMRI responses at different positions relative to the cortical surface (i.e., across cortical depths corresponding to layers). We test for representations related to 3D perception by presenting participants (male and female, N = 8) with stimuli that enable stable stereoscopic perception (i.e., correlated random dot stereograms: RDS) vs. those that do not (i.e., anti-correlated RDS). Using multi-voxel pattern analysis (MVPA), we demonstrate cortical depth-specific representations in area V3A and V7 as indicated by stronger pattern responses for correlated than anti-correlated stimuli in upper than deeper layers. Examining informational connectivity, we find higher feedforward layer-to-layer connectivity for correlated than anti-correlated stimuli between V3A and V7. Further, we observe disparity-specific feedback from V3A to V1 and from V7 to V3A. Our findings provide evidence for the role of V3A as a key nexus for disparity processing that is implicated in feedforward and feedback signals related to the perceptual estimation of 3D structure. See the file 'Description of uploaded data' for a detailed description of the dataset.
DOI: 10.6084/m9.figshare.c.3623861_d3
title: Additional file 9: of Genomic signatures of Mannheimia haemolytica that associate with the lungs of cattle with respiratory disease, an integrative conjugative element, and antibiotic resistance genes

description: Table of nucleotide polymorphisms with both alleles observed in genotype 2 M. haemolytica isolates. The table shows informative and tagging polymorphisms for the subtypes of genotype 2. (XLSX 131 kb)
DOI: 10.17863/cam.94523
title: Research data supporting "Spatial temperature and water molar concentration measurements using thermal and electrostrictive LIGS during operation of a swirl burner at pressure"

description: Laser-Induced Grating Spectroscopy (LIGS) was applied in a high pressure combustion facility. Instantaneous (sub-us), spatially resolved (within 5mm) measurements of temperature and molar fractions of water were obtained using thermal and electrostrictive LIGS signals. Temperatures up to 1800K and water molar fractions between 0.01 and 0.12 were measured. A new analytic approach was developed to extract temperature from the measured signal frequencies within the flame brush region, where mixtures contain both burnt and unburnt gases. Mean product temperatures are shown to be 8% lower than the adiabatic temperatures for the nominal equivalence ratio, and 14% higher than measurements made with a thermocouple, uncorrected for radiation losses. This work represents the first application of LIGS to a high-pressure, turbulent swirling flame, opening up the potential for future uses in other real world applications. Challenges associated with the deployment of the technique are described, as are potential measures to overcome these difficulties.
DOI: 10.6084/m9.figshare.c.3623861_d4
title: Additional file 3: of Genomic signatures of Mannheimia haemolytica that associate with the lungs of cattle with respiratory disease, an integrative conjugative element, and antibiotic resistance genes

description: Table of nucleotide polymorphism allele locations and genotypes used to initially type all 1133 M. haemolytica isolates (second table). Due to the size of the dataset this is the second of two tables that contain the genotypes (Additional files 2 and 3). The table contains the locations and allele scores for 5141 of 16,447 nucleotide polymorphisms that were used to generate the tree of Fig.Â 1. Each polymorphism was unambiguously scored in 95% or more of the isolates. (CSV 11580 kb)
DOI: 10.6084/m9.figshare.c.3623900_d1
title: Additional file 2: of Genomic dissection and prediction of heading date in perennial ryegrass

description: Genes predicted in the scaffolds harboring the significant SNPs. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3623861_d5
title: Additional file 6: of Genomic signatures of Mannheimia haemolytica that associate with the lungs of cattle with respiratory disease, an integrative conjugative element, and antibiotic resistance genes

description: Table of nucleotide polymorphisms with both alleles observed in genotype 1 M. haemolytica isolates. The table shows informative and tagging polymorphisms for the subtypes of genotype 1. (XLSX 87 kb)
DOI: 10.6084/m9.figshare.c.3623861_d6
title: Additional file 5: of Genomic signatures of Mannheimia haemolytica that associate with the lungs of cattle with respiratory disease, an integrative conjugative element, and antibiotic resistance genes

description: Table of nucleotide polymorphism allele locations and genotypes used to type genotype 1 M. haemolytica isolates (second table). Due to the size of the dataset, this is the second of two tables that contain the genotypes (Additional files 4 and 5). The table contains the locations and allele scores for 5176 of the 16,888 nucleotide polymorphisms used to type genotype 1 M. haemolytica and construct the network of Fig.Â 2. Each polymorphism was unambiguously scored in 90% or more of the isolates. (CSV 5410 kb)
DOI: 10.15468/dl.d67d2j
title: Occurrence Download

description: A dataset containing 726 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedeomyia squamipennis (Lynch Arribálzaga, 1878)"
 ]
}

 The dataset includes 726 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033219-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3623861_d7
title: Additional file 7: of Genomic signatures of Mannheimia haemolytica that associate with the lungs of cattle with respiratory disease, an integrative conjugative element, and antibiotic resistance genes

description: Table of nucleotide polymorphism allele locations and genotypes used to score genotype 2 M. haemolytica isolates (first table). Due to the size of the dataset, this is the first of two tables that contain the genotypes (Additional files 7 and 8). The table contains the locations and allele scores for 16,246 of 24,475 nucleotide polymorphisms used to type genotype 2 M. haemolytica and construct the network of Fig.Â 3. Each polymorphism was unambiguously scored in 90% or more of the isolates. (ZIP 3413 kb)
DOI: 10.17863/cam.95359
title: Research data supporting Microwave-assisted valorization of glycerol to solketal using biomass-derived heterogeneous catalyst

description: Research data supporting the full paper entitled "Microwave-assisted valorization of glycerol to solketal using biomass-derived heterogeneous catalyst " by S. Ao et al. in Fuel, 2023, 345, 128190. A heterogeneous biomass-based carbonaceous solid acid catalyst (SAFACAM) whose preparation we reported in https://doi.org/10.1016/j.renene.2021.12.001 was used multiple times in the production of solketal. The following supporting data are deposited here: X-ray powder diffraction (XRD) used a PANalytical X’Pert Pro diffractometer (Cu Kα radiation, 2theta = 10-60°, 100 mA current and 40 kV operating voltage). Brunauer-Emmet-Teller (BET) analysis used a Micromeritics ASAP 2010 surface area and porosity analyzer after sample degassing for 10 h and 150 °C. Thermogravimetric analysis (TGA) and derivative thermogravimetry (DTG) used a Metter Toledo TGA/DSC 1. Heating rate 10 °C min–1 and constant N2 flow in the range 50-600 °C. FT-IR analysis was by Nicolet iS50 spectrometer (Thermofisher). Solid-state magic angle spinning (MAS) nuclear magnetic resonance (NMR) spectroscopy used a Bruker AVANCE 400 MHz (9.4 T) instrument with a 4 mm double resonance probe. 1H-13C cross-polarization (CP) used 100 kHz 1H broadband SPINAL64, at 10 kHz MAS, 4 ms CP contact time (75 kHz ramped 1H, 65 kHz square 13C contact pulses), and a 2 s recycle delay. Shifts were referenced externally against the methylene 13C signal of glycine (43.1 ppm). 20 Hz exponential line broadening was applied when processing. Experiments used Bruker TopSpin 2.1. The catalyst was used to prepare solketal. Product analysis used an Agilent 7890 runing in head-space injector mode, and using a CPSIL 8CB capillary column (30 m × 0.25 mm × 0.25 μm) and a GC FID detector. Oven temperature was increased from 55 °C to 230 °C at 10 °C min–1. The temperature of the detector and the injector were 300 °C and 250 °C, respectively. Dimethyl sulfoxide internal standard. A Shimadzu QP 2010 Ultra mass spectrometer was used in HRMS. 1H and 1H 13C NMR spectra were obtained on a Bruker Avance II 500 MHz spectrometer. Deuterated solvent was stored over molecular sieves (3 Å). Chemical shifts were internally referenced to the deuterated solvent. Data collected at 28 °C.
DOI: 10.17863/cam.53890
title: A hybrid machine learning method for construction schedule risk analysis - John Patrick Fitzsimmons

description: Scheduling data. The dataset contains approximately 300 schedules of construction projects. It describes the start and finish time of construction projects, and how, where and when a project is built.
DOI: 10.17863/cam.40836
title: Whale reflectance spectra

description: A list of whale reflectance spectra, pre-processed (see publication) with information about the species, collection method, and the set up.
DOI: 10.6084/m9.figshare.c.3623924_d3
title: Additional file 2: Table S8. of Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis

description: Proteins potentially involved in symbiont interaction in O. algarvensis, all transcripts and proteins. (XLSX 92Â kb)
DOI: 10.6084/m9.figshare.c.3623939_d2
title: MOESM4 of ProInflam: a webserver for the prediction of proinflammatory antigenicity of peptides and proteins

description: Additional file 4: Table S4. Performance of models developed on main dataset, with RandomForest, BayesNet, NaiveBayes, IBk and J48.
DOI: 10.6084/m9.figshare.c.3623939_d3
title: MOESM3 of ProInflam: a webserver for the prediction of proinflammatory antigenicity of peptides and proteins

description: Additional file 3: Table S3. MERCI motifs extracted form proinflammatory and non-proinflammatory data.
DOI: 10.6084/m9.figshare.c.3623951_d1
title: Additional file 1: of Genomic profiling of CHEK2*1100delC-mutated breast carcinomas

description: Immune signature probe-sets. Excel spreadsheet with a list of probe-sets constituting the immune signature. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3623939_d4
title: MOESM5 of ProInflam: a webserver for the prediction of proinflammatory antigenicity of peptides and proteins

description: Additional file 5: Table S5. . Performance of different machine learning models developed on alternate dataset.
DOI: 10.6084/m9.figshare.c.3623942_d3
title: Additional file 3: Table S3a,b,c and d. of Tracking post-infectious fatigue in clinic using routine Lab tests

description: Supplemental tables containing summary statistics describing the significance and probability of false discovery for the effects of time and the time x group interaction for each of the clinical markers using a regression-based repeated measures model. (XLSX 48Â kb)
DOI: 10.17863/cam.53210
title: Agda code accompanying "Typal Heterogeneous Equality Types" (updated)

description: Updated Agda code (source code and html) for the paper "Typal Heterogeneous Equality Types" in ACM Trans. Comput. Logic 21, 3, Article 25 (March 2020). This dataset replaces https://doi.org/10.17863/CAM.47902
DOI: 10.6084/m9.figshare.c.3623939_d5
title: MOESM2 of ProInflam: a webserver for the prediction of proinflammatory antigenicity of peptides and proteins

description: Additional file 2: Table S2. Dipeptide composition distribution between proinflammatory and non proinflammatory data.
DOI: 10.15468/dl.m9ctav
title: Occurrence Download

description: A dataset containing 251 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sonneratia apetala Buch.-Ham."
 ]
}

 The dataset includes 251 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033221-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.33771
title: Report presented to the Charity Open Access Fund for article processing charges managed by the University of Cambridge, 2017-2018

description: This spreadsheet records article processing charges (APCs) paid through the Charity Open Access Fund (COAF) block grant at the University of Cambridge, via the Office of Scholarly Communication, Cambridge University Library, between 1 October 2017 and 30 September 2018.
DOI: 10.17863/cam.23725
title: Report presented to Research Councils UK for article processing charges managed by the University of Cambridge, 2017-2018

description: This Excel spreadsheet records the applications made for open access article processing charges (APCs) through the Research Councils UK (RCUK) block grant at the University of Cambridge, via the Office of Scholarly Communication, Cambridge University Library, between 1 April 2017 and 31 March 2018.
DOI: 10.17863/cam.52184
title: Dataset supporting 'Mixing in forced stratified turbulence and its dependence on large-scale forcing'

description: Data and python scripts required to recreate the figures in the linked publication. The data has been produced by direct numerical simulations, the (Fortran) code for which can be found on Github. The python scripts to produce the figures are presented in the form of Jupyter notebooks, and require the Python packages numpy, h5py, matplotlib, cmocean, and pyfftw.