cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.35078/gmjlup/homk8x
title: Venda Nova B.jpg

description: :unav
DOI: 10.35078/scsz5z/uw42up
title: Riviéra B.jpg

description: :unav
DOI: 10.35078/5yqf7o/axszl5
title: Chaves B.jpg

description: :unav
DOI: 10.35078/cune5h/dwqawo
title: Gargem Grande A.jpg

description: :unav
DOI: 10.35078/prwdgs/f8hmom
title: Cor. Pintor B.jpg

description: :unav
DOI: 10.35078/gmjlup/bqtmau
title: Cabeceira do Bonsucesso D.jpg

description: :unav
DOI: 10.35078/scsz5z/y0bb6w
title: Dunga A.jpg

description: :unav
DOI: 10.35078/cune5h/5br3gc
title: Pintada B.jpg

description: :unav
DOI: 10.35078/gmjlup/c04v6o
title: Gameleira A.jpg

description: :unav
DOI: 10.35078/prwdgs/bxmqin
title: Barra B.jpg

description: :unav
DOI: 10.35078/scsz5z/rvq5r1
title: Luiz Cunha B.jpg

description: :unav
DOI: 10.35078/5yqf7o/trnt8j
title: Cabeceira do Taquaral B.jpg

description: :unav
DOI: 10.35078/cune5h/cx0mxd
title: Barca A.jpg

description: :unav
DOI: 10.35078/gmjlup/47ofh2
title: Tamboril Sítio A.jpg

description: :unav
DOI: 10.35078/prwdgs/v1t3ib
title: Rocha A.jpg

description: :unav
DOI: 10.35078/5yqf7o/phfvqk
title: Jacu A.jpg

description: :unav
DOI: 10.35078/scsz5z/zpksqw
title: Marimbá de Baixo B.jpg

description: :unav
DOI: 10.35078/cune5h/zvysrc
title: Frade B.jpg

description: :unav
DOI: 10.35078/prwdgs/qfdofz
title: Grota do Buracão B.jpg

description: :unav
DOI: 10.35078/5yqf7o/hccdod
title: Manga B.jpg

description: :unav
DOI: 10.35078/gmjlup/alvi8i
title: Santa Inês A.jpg

description: :unav
DOI: 10.35078/scsz5z/l02rfe
title: Bom Retiro A.jpg

description: :unav
DOI: 10.35078/cune5h/uluc2d
title: Conj. Habitacional São Tarcisio A.jpg

description: :unav
DOI: 10.5061/dryad.f5th5/6
title: BEAST_inputs

description: XML input files of strict-clock BEAST analyses for dated intraspecific phylogenies of Murina gracilis and M. recondita. For each species, files were separately prepared for analyses with a constant-sized population model and a Bayesian Skyline Plot (BSP) model.
DOI: 10.5061/dryad.f5th5/7
title: BEAST_trees

description: Maximum clade credibility trees (MCCT) obtained from strict-clock BEAST analyses applied to each of Murina gracilis and M. recondita. Tree files from analyses with a constant-sized population model and a Bayesian Skyline Plot model are both given.
DOI: 10.5061/dryad.f5th5/8
title: EBSP_inputs

description: XML input files of the Extended Bayesian Skyline Plot (EBSP) analyses for individual local samples of Murina gracilis and M. recondita as well as for range-wide samples of M. puta and Taiwanese Kerivoula.
DOI: 10.5061/dryad.f5th5/9
title: Microsatellite_data

description: Panels of multi-locus microsatellite genotypes for the four Taiwanese bat species with sexes and GPS coordinates for individual bats provided. Missing values and the second alleles of males at the X-linked locus, B9, are coded as -9.
DOI: 10.5061/dryad.ft922/1
title: Norvaisas_Kisdi_Mathematica

description: The zip file contains three Mathematica notebooks, which were used to produce the figures as indicated in the file names. The notebooks are briefly annotated and are based on the equations given in the paper.
DOI: 10.5061/dryad.g3v15/1
title: RNA-seq libraries used for transcript discovery and alternative splicing analysis

description: RNA-seq libraries used for transcript discovery and alternative splicing analysis
DOI: 10.5061/dryad.h8c79/1
title: PvSUB1 homology 3D-model

description: Plasmodium vivax Subtilisin 1 (Genbank N° FJ536584) homology model generated by the modeling software Modeller and cited in Bastianelli et al, Plos One In press 2014).
DOI: 10.5061/dryad.j57c0/6
title: 4_GPD_haplotypes

description: GPD alignment collapsed to haplotypes
DOI: 10.5061/dryad.kh356/1
title: Average Vector Direction

description: Data used to evaluate changes in the orientation of caribou with respect to the nearest road or cut block as a function of distance from these anthropogenic features (Fig. B1 Online Appendix B).
DOI: 10.5061/dryad.kq5q3/1
title: 1.SealRocks.454Reads

description: Sequence data (n=8674 reads) from amplicons recovered from Australian fur seal scats collected at Seal Rocks. In fasta format.
DOI: 10.5061/dryad.kq5q3/5
title: Reference Sequences 16S short
DOI: 10.5061/dryad.nn20r/1
title: Jackson et al ISE 12S rDNA data & analysis file (.nex)

description: Nexus file containing 12S rDNA data and PAUP* 4.0 analysis commands for Jackson et al.
DOI: 10.5061/dryad.nn20r/2
title: Jackson et al ISE data & analysis file - COI (.nex)

description: NEXUS file containing COI DNA data and PAUP* 4.0 analysis commands from Jackson et al. ISE
DOI: 10.5061/dryad.nn20r/3
title: Jackson et al ISE wingless data & analysis file (.nex)

description: NEXUS file containing wingless nDNA data and PAUP* 4.0 analysis commands from Jackson et al. ISE
DOI: 10.5061/dryad.nn20r/4
title: Jackson et al ISE CAD data & analysis file (.nex)

description: NEXUS file containing CAD nDNA data and PAUP 4.0* analysis commands from Jackson et al. ISE
DOI: 10.5061/dryad.nn20r/5
title: Jackson et al ISE Total Concatenated Data & analysis file (.nex)

description: NEXUS file containing total concatenated mDNA, rDNA & nDNA and PAUP* 4.0 analysis commands from Jackson et al. ISE
DOI: 10.5061/dryad.nn20r/6
title: Jackson et al ISE Total Concatenated Data & analysis file -BAYES (.nex)

description: NEXUS file containing total concatenated mDNA, rDNA & nDNA and Mr.Bayes analysis commands from Jackson et al. ISE
DOI: 10.5061/dryad.p2j15/1
title: genotypes_9loci_forDRYAD

description: This is a Genepop-formatted file of black-tailed prairie dog genotypes at 9 microsatellite loci.  Samples were collected in Boulder, Colorado, genotyped on a Licor 4200 gel sequencer and analyzed in the program GeneImagIR.  The top 2 lines are comments, and the next 9 are locus names.  Individuals that produced plague antibodies and survived until the next year are denoted with an asterisk.
DOI: 10.5061/dryad.qj811/1
title: dataset

description: Ejaculate quality traits, body mass, combined testis mass and basal metabolic rate for all species examined, collected from the literature (see References file). D=sperm quality traits were measured in samples from dissected specimens rather than ejaculates; (D)=only some of the traits were measured in dissected specimens; *=Combined testis mass was calculated from testicular dimensions or testis volume following: CTM = 1.166 * L * W * W, where L and W are the mean length and width, respectively, of the two testes;**=BMR was converted either from kcal/d (assuming 1L O2 = 4.839 kcal) or from kJ/d (assuming 1L O2 = 20.083 kJ)
DOI: 10.5061/dryad.qq08m/1
title: Relationship between species richness and area

description: Data for all 10 of our study sites. This data matches figure 1 in the manuscript. Columns in this excel file are: Plot size (m^2), Log plot size, number of species observed in the plot (i.e., richness), log number of species observed in the plot, site (corresponds to the figure), site number (corresponds to figure), Community (whether or not the community is in invaded or uninvaded)
DOI: 10.5061/dryad.qr81p/1
title: Gene similarity network

description: The folder "ConnectedComponents" contains one file for each connected component. In each file, each line represents a network edge. The file GeneAnnotations.txt contains basic information for each gene.
DOI: 10.5061/dryad.r7m52/1
title: Development&Temperature

description: Original data of development and growth for different populations of Carabus tosanus at two temperatures (15C and 20C) under 16L-8D.
DOI: 10.5061/dryad.r7m52/2
title: CrossingExperiment

description: Original data of development and growth of offspring from crossing between Carabus tosanus subspecies tosanus and ishizuchianus at 20C and 16L-8D.
DOI: 10.5061/dryad.rr064j8q/1
title: Supplement (01-10)

description: Supplements described in manuscript: S1 is sequence input (fasta format); S2 is time-ordered list of species; S3 is CAST output; S4 is parsed BLAST output; S5 is MCL output; S6 is BLAST output for unique genes; S7 is genome distance matrix; S8 is full sequence dataset from Figure 4 (fasta format); S9 is sequence dataset from Figure 5 (fasta format); S10 is count of new family contributions.
DOI: 10.5061/dryad.t815g/1
title: Aphids

description: “Aphids” contains two sheets one given the aphid population of all plants used in the experiment, while the second contains the average hind tibia length in mm of aphids from each plant
DOI: 10.5061/dryad.t815g/2
title: Heliothis and Plant Damage

description: “Heliothis and Plant Damage” contains two sheets, one given the survivial and weight in mg of H. virescens on Bt an non-Bt cotton. The second the leaf damage in cm2 caused by H. virescens on both plant types. NOTE: The lower number of data entries in the plant damage sheet is caused by loss of raw data due to a camera malfunction.
DOI: 10.5061/dryad.t815g/3
title: Gossypol content in response to H. virescens

description: “Gossypol content in response to H. virescens “ gives the terpenoid concentrations of oldest and youngest leaf of Bt and non-Bt cotton that were uninfested or infested with H. virescens for one week. All data is ng/terpenoids per mg dry weight leaf.NOTE: Terpenoid data from our field study is included in the Field Experiment data sheets to ease comparison of data.
DOI: 10.5061/dryad.t815g/4
title: Gossypol content in response to Jasmonic Acid

description: “Gossypol content in response to Jasmonic Acid” gives the terpenoid concentrations of oldest and youngest leaf of Bt and non-Bt cotton that were untreated or treated with Jasmonic acid one week before collecting the leaf. All data is ng/terpenoids per mg dry weight leaf.NOTE: Terpenoid data from our field study is included in the “Field Experiment” folder to ease comparison of data.
DOI: 10.5061/dryad.t815g/5
title: Summary_Plants infested with Spodoptera

description: “Summary_Plants infested with Spodoptera” contains the data of the field experiment plants there were artifically infested with S. exigua.                         The File contain three sheets detailing the aphid population per plant and sample date, the damage of each plant per screening data and the final terpenoid concentration of each plant at the end of the experiment. NOTE: Plant identifiers are consistent for each data set. Missing entries are caused by problems during data collection, e.g. corrupted or blurred jpeg files during plant damage assessment.
DOI: 10.5061/dryad.t815g/6
title: Summary_Plants naturally infested

description: “Summary_Plants naturally infested” contains the data of the field experiment plants that were only exposed to natural infestation.Both files contain three sheets detailing the aphid population per plant and sample date, the damage of each plant per screening data and the final terpenoid concentration of each plant at the end of the experiment. NOTE: Plant identifiers are consistent for each data set. Missing entries are caused by problems during data collection, e.g. corrupted or blurred jpeg files during plant damage assessment.
DOI: 10.5061/dryad.tm8k3/1
title: mtDNA_-_alignment_files

description: mtDNA alignment files
DOI: 10.5061/dryad.0v6f8/1
title: Growth data of the trees involved in the barnase sterility trial
DOI: 10.5061/dryad.0v6f8/2
title: Growth data of the trees involved in the reporter trial
DOI: 10.5061/dryad.0v6f8/3
title: Catkin length, weight, and angle data

description: The length, weight, and angle of catkins from the trees in the sterility trial were measured and compared to that of non-transgenic controls.
DOI: 10.5061/dryad.0v6f8/4
title: Pollen count and viability data for the trees in the barnase sterility trial
DOI: 10.5061/dryad.0v6f8/5
title: R programming code

description: Programming code for R used when comparing the growth data of the sterility and reporter trees to the data of the non-transgenic controls
DOI: 10.5061/dryad.189f4/1
title: Charlier_Blanktjärnen_Brown trout_Heredity_DRYAD
DOI: 10.5061/dryad.23vp5/3
title: Shorebird_Count_Data_DESeq.txt

description: This file holds the count data for all the transcripts with putative "avian origins" i.e., those contigs that have a 1:1 ortholog within the genomes of chicken and/or zebra finch. Differential gene expression was conducted using the R Bioconductor package, DESeq (version 10.1.1) (Anders & Huber 2010).
DOI: 10.5061/dryad.33d6c/2
title: appendix A_adult size
DOI: 10.5061/dryad.3g615/1
title: Supplementary Information S1

description: S1. SNP matrix of 11,286 orthologous SNPs discovered among ten C. burnetii genomes.
DOI: 10.5061/dryad.3g615/2
title: SupportinglnformationS2

description: S2. Maximum parsimony tree using seven parsimony informative (synapomorphic) SNPs with loci shared with closest outgroup species. Only one SNP locus (out of 11,386 total SNPs among C. burnetii genomes) was present in all genomes. The remaining six loci were found by relaxing the requirement that all loci are shared among all C. burnetii genomes as they were not present in the Q177 genome. All seven SNP loci were present in Pseudomonas syringae and Legionella pneumophila. Four of the seven loci were present in Ricketsiella grylli. Consistency index = 1.0. Numbers on branches indicate bootstrap support percentages from 1000 bootstrap replicates.
DOI: 10.5061/dryad.3vf7p/2
title: MATLAB code

description: This code generates the results shown in Figures 3-5.
DOI: 10.5061/dryad.49s43/10
title: Contig msatcommander output
DOI: 10.5061/dryad.49s43/11
title: Microsatellite variability
DOI: 10.5061/dryad.49s43/12
title: Singleton msatcommander output
DOI: 10.5061/dryad.49s43/6
title: Dipodomys spectabilis spleen transcriptome contigs

description: We extracted RNA from the spleens of 4 individuals.  Spleen cDNA libraries were sequenced on a 454 Genome Sequencer.  454 sequence reads from all kidney samples were pooled and assembled into contigs using PCAP.
DOI: 10.5061/dryad.49s43/7
title: Acipenser fulvescens ovary transcriptome contigs

description: We extracted RNA from the ovary of a single individual.  The cDNA library was sequenced on a 454 Genome Sequencer and reads were assembled into contigs using PCAP.
DOI: 10.5061/dryad.49s43/8
title: Acipenser fulvescens testes transcriptome contigs

description: We extracted RNA from the testes of a single individual.  The cDNA library was sequenced on a 454 Genome Sequencer and reads were assembled into contigs using PCAP.
DOI: 10.5061/dryad.49s43/9
title: Assembly summary statistics
DOI: 10.5061/dryad.5m083/1
title: Microcebus murinus behavioral responses

description: This data was collected from captive animals housed at Duke Lemur Center in Durham, NC. We provide information on the individual (age class, sex), the number of times the individual was handled, a mean (+/- SD) for the agitation index (AI), the log of the coefficient of variation (CV) of the agitation index (AI). Additionally we provide the following values measured in seconds: Mean Latency to Approach Control Object, Mean Latency to Approach Novel Object, Mean Latency to Grab and Consume Control Food, Mean Latency to Grab and Consume Novel Food
DOI: 10.5061/dryad.5p1j3/4
title: MOTU table for artificial community sample

description: MOTU list for artificial community sample (33 morphologically identified species) at the 97% threshold, with information of number of sequence reads, Blast result and representative sequence.
DOI: 10.5061/dryad.5p1j3/5
title: MOTU table for field-collected samples

description: MOTU list for field-collected samples at the 97% similarity threshold, with information of number of sequence reads in each station, Blast result, and representative sequences. The taxonomic order determined by the naϊve Bayesian classifier implemented in mothur is also listed.
DOI: 10.5061/dryad.5p1j3/6
title: Raw data of morphological analysis

description: Morphological analysis of field-collected samples. Numbers of individuals (Inds.) and total dry weight (DW) for all species identified from each sampling location. Numbers of individuals and DW are calibrated into unsplit (1/1) samples.
DOI: 10.5061/dryad.5p1j3/7
title: MOTU table for field-collected samples (99% similarity)

description: MOTU list for field-collected samples at the 99% similarity threshold, with information of number of sequence reads in each station, and representative sequences.
DOI: 10.5061/dryad.5p1j3/8
title: MID tag information

description: MID tag used in this study. Each sample was differentiated by unique multiplex identifier (MID) adaptors in GS Titanium Rapid Library MID Adaptors Kit (Roche).
DOI: 10.5061/dryad.75g00/1
title: NPSResponseToHalbert_etal_TableS1_JHered_Apr2012

description: Breeding season ranges used by radio-collared, female bison in Yellowstone National Park during 2002-2011
DOI: 10.5061/dryad.76dc8/10
title: Raw data for sampling sites and distribution data

description: This excel file contains all raw data collected from the field. In the first sheet we have listed: the collection date , GPS waypoint, and depth of every sponge in the study area, as well as sponge morphological data and data on the fish present in every sponge (fish presence/absence, number of fish, and size of each fish). On the second sheet are the specific geographic coordinates that correspond to each GPS waypoint.
DOI: 10.5061/dryad.76dc8/11
title: Microsatellite genotypes

description: This files contains the genotypes for all gobies at 14 polymorphic microsatellite markers. Gobies include all individuals from Curlew Caye (here, we list their standard length [SL] and whether they are categorized as a potential offspring or parent for the parentage analysis). We also include genotypes for the additional settlers collected at each of the 6 sites for the export analyses.
DOI: 10.5061/dryad.76dc8/12
title: Raw distance data between all reef patches in the study

description: The first sheet of this Excel file contains the distance between Curlew and all reef patches within 35 km of Curlew. It also has a histogram of the distances. The second sheet lists each of the six additional export sites, and for each of those sites, lists the raw distances between every other patch within 35 km and the given focal site.
DOI: 10.5061/dryad.76dc8/13
title: Self-recruitment Simulation

description: This Excel file shows step-by-step how we completed the simulation of dispersal to determine which simple dispersal kernel explains the observed self-recruitment percentage. Based on the distance between all reef patches within 35 km of the focal site (Curlew Caye), we iteratively apply a simple exponential decay rate. Based on the cumulative relative probability of dispersal to that site, we can predict self-recruitment and compare to the observed value. Further details are given within the file by Excel comments.
DOI: 10.5061/dryad.76dc8/7
title: Export sites shape file

description: This .shp file shows the centroids of the six additionally sampled export reef patches for the export parentage analysis. Suggested projection: Datum (WGS 84); Projection (UTM zone 16N).
DOI: 10.5061/dryad.79400/1
title: MARGINAL OVERDOMINANCE SURVIVAL DATA

description: This dataset was generated by an experiment performed by Marijan Posavi to test for the presence of reversal of dominance and marginal overdominance in salinity tolerance in the salt-to-freshwater invading copepod Eurytemora affinis.  Saline and freshwater inbred lines were crossed to determine survival of the F1 hybrids relative to each parental line at three salinities. This research was performed in the laboratory of Carol Eunmi Lee at the University of Wisconsin, and was funded by the National Science Foundation.
DOI: 10.5061/dryad.7m6kg/57
title: Fig. 10e: ROM 60088 – Nectocaris pteryx from the Burgess Shale

description: Pale white sheath surrounds bars
DOI: 10.5061/dryad.82h0m/3
title: Squamata_10_28

description: Matrix containing DNA sequences from 4162 species from 12 genes, with 12896 bp per species.
DOI: 10.5061/dryad.85qv1/1
title: Gevaert_SupMat_TableS1

description: This table provides primer information for the 18 EST-SSR markers used in this study and first published in Pashley et al. (2006; J Hered 97: 381-388). The column titled Locus ID refers to the nomenclature used in this study and previously referenced in Ellis et al. (2006; Mol. Ecol. 15: 2345-2355). The M13 tail used for labeling of all forward primers was CACGACGTTGTAAAACGAC, and is not included in the Forward Primer column. The expected size of each locus is based on the EST sequences originally developed for Helianthus annuus, and with the exception of BL0003, BL0010, BL0011 and BL0018, correspond similarly in H. porteri. Additional information on these markers is available at http://www.theburkelab.org/datafiles/JHered2006b_Primers.txt
DOI: 10.5061/dryad.86r20/1
title: Kokita et al 2013 MEC

description: Genotyping data of anonymous microsatellite and candidate gene markers (107 loci). The data set consists of samples from four populations (AM, FK, SZ and WK). See Kokita et al. (2013) for further details. The data file is in MSA format [Dieringer D, Schlotterer C (2003) Microsatellite Analyser (msa): a platform independent analysis tool for large microsatellite data sets. Molecular Ecology Notes, 3, 167–169].
DOI: 10.5061/dryad.8dd3n/5
title: 454 assembled contigs

description: Fasta files of contigs assembled from 454 GS FLX sequencing data
DOI: 10.5061/dryad.9v852/1
title: 5699 bp of mtDNA datafile

description: Nexus file for sequence data for 5699 bp of mtDNA.
DOI: 10.5061/dryad.9v852/2
title: Nannoperca cytb data for unique haplotypes

description: Nexus file for sequence data for cytochrome b gene by haplotype.
DOI: 10.5061/dryad.c08b5/3
title: morphology&diet_data.xls

description: Excel spreadsheet of morphometric data (snout to vent length, relative girth at 0.75 snout to vent length versus neck); and new (previously unpublished) diet records
DOI: 10.5061/dryad.d08h9/1
title: Genotype data

description: Genotype data at 1170 loci for all 467 individual stickleback
DOI: 10.5061/dryad.d7k5r5d2/2
title: raw_biologGENIII_data

description: Raw growth data of the bacterial strains in the biolog GENIII microplate
DOI: 10.5061/dryad.d7k5r5d2/3
title: biolog_GENIII_data

description: For all growth conditions in the Biolog GENIII microplates, growth yield of the 7 bacterial samples and growth yield ratio of the eight bacterial comparisons. Results of the clustering analyses and of the Wilcoxon sum-rank tests for the eight comparisons are also indicated.
DOI: 10.5061/dryad.d7k5r5d2/4
title: transcriptome_data

description: Analysis of transcriptomic data. Average expression ration, p-values and q-values are indicated for the probe sets. For each probe set, gene ontology category, regulators, and results of the clustering analyses are indicated
DOI: 10.5061/dryad.g5jj6/3
title: cerevisiae_alignment

description: Sequence alignment (concatenated) and corresponding genomic positions for S. cerevisiae
DOI: 10.5061/dryad.g776j/1
title: Genotypes of gorse individuals
DOI: 10.5061/dryad.hq54s/1
title: Rodriguez grain_GXE JEB appendix

description: Supporting information for "Grain of environment explains variation in the strength of genotype × environment interaction". Word file, contains data table Table S1 and associated references
DOI: 10.5061/dryad.j57c0/11
title: 6_ITS_StochasticMaps_transitions

description: Final log of the Stochastic character mapping simulations, it was used to generate plots of transitions through time.
DOI: 10.5061/dryad.j57c0/7
title: 4_mtLSU_haplotypes

description: mtLSU alignment collapsed to haplotypes
DOI: 10.5061/dryad.jc76f/1
title: Trait data in Nexus format

description: This is a gzip compressed tar archive of six nexus files (and a README file). Each nexus file contains the trait data for one of the six types of extra-floral nectary as described in the paper. Each file also contains a trees block with the same MCC tree used in places in the paper. The nexus file is plain text.
DOI: 10.5061/dryad.jm453/1
title: Amphibia_2_9

description: Matrix of 3309 amphibian species sampled for up to 12 genes (12809bp total) and one outgroup.
DOI: 10.5061/dryad.jm453/2
title: Amphibia_Models

description: Model file for the Amphibia_2_9 matrix, describing the 12 genes and their partitions.