cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/38kf55bcn4.1
title: Supplementary material

description: Supplementary material for "The simulated environmental impact of incorporating white clover into pasture-based dairy production systems".
DOI: 10.17632/r95wd79gyc.1
title: MydataBM

description: These data allowed us to study crop discrimination in a very fragmented and intensive agricultural system.
DOI: 10.17632/2wxxyntrcv.2
title: Dataset for 'Friend vs. Foe: Cognitive and affective empathy in women with different hormonal states'

description: Dataset used for the analyses presented in 'Friend vs. Foe: Cognitive and affective empathy in women with different hormonal states'. It contains the regression coefficients/correlation coefficients as well as response times for the different empathy components and perspective conditions. Furthermore, hormonal data as well as sociodemographic and neuropsychological data used for sample description are included.
DOI: 10.17632/ccvvsv8g3w.1
title: Signatures of Antagonistic Pleiotropy in a Bacterial Flagellin Epitope.
DOI: 10.17632/zsns7pjb4w.2
title: Strawberry data for MGIDI paper

description: This file contains data on multiple traits evaluated in a strawberry experiment. See https://doi.org/10.1101/2020.12.30.424876 for information regarding the trait names.
DOI: 10.17632/vkkzxkwwjk.2
title: Dataset of Actual evapotranspiration estimates in arid cold regions using machine learning algorithms with in-situ and remote sensing data

description: This data set corresponds to the original hourly data reported in the Article "Actual evapotranspiration estimates in arid cold regions using machine learning algorithms with in-situ and remote sensing data", by J. Mosre and F. Suárez
DOI: 10.17632/svz3d99tmm.1
title: Data for Glacial Isostatic Adjustment of the Pacific Coast of North America: The Influence of Lateral Earth Structure

description: These data are associated with the paper entitled Glacial Isostatic Adjustment of the Pacific Coast of North America: The Influence of Lateral Earth Structure. There are two files: - The first file contains modelled GIA-induced present-day vertical land motion rates for different 3D realisations of Earth structure; - The second file contains modelled relative sea level (RSL) curves spanning the past 21 kyr. Both of these data covers the western coast of central North America.
DOI: 10.6073/pasta/2ec9f1ad16a8675704b926364ac8f2a3
title: SBC LTER: Ocean: Currents and Biogeochemistry: Moored CTD and ADCP data from Arroyo Quemado Reef Mooring (ARQ), ongoing since 2004

description: ADCP (Currents), CTD (Hydrography) and Optics data (Fluorescence, Beam Attenuation and Volume Scattering Function) were collected at Arroyo Quemado Reef in the Santa Barbara Channel (site ID: ARQ). Data have been interpolated to a 20 minute interval. ADCP data are binned at a 1.0 meter interval, measured as height from the bottom to a maximum of 16 bins. All bins may not be filled, and in some cases, data from bins technically above the surface are included. VSF data are available at angles, 100, 125 and 150 degrees. CTD parameters include Pressure, Temperature, Conductivity, Salinity, Density and Fluorescence. The CTD array is located approximately 4.5 meters from the surface, and there are additional temperature thermistors near the CTD array, at the bottom, and mid way between these two.
DOI: 10.6084/m9.figshare.14167013
title: Edge creation changes the timing and intensity of phenological reproductive patterns and species activities in forest tree communities - Supplementary Material

description: <b>Table S1</b> - All sampled tree species, ordered by botanical families, and their total abundance (N), edge abundance (N edge), and interior abundance (N interior). Species marked in red are species common for both habitats (interior and edge). The "2010" and "2011" columns indicate the phenological activity recorded over the study period.
DOI: 10.6084/m9.figshare.14167013.v1
title: Edge creation changes the timing and intensity of phenological reproductive patterns and species activities in forest tree communities - Supplementary Material

description: <b>Table S1</b> - All sampled tree species, ordered by botanical families, and their total abundance (N), edge abundance (N edge), and interior abundance (N interior). Species marked in red are species common for both habitats (interior and edge). The "2010" and "2011" columns indicate the phenological activity recorded over the study period.
DOI: 10.17632/9pn8wbhr9x.1
title: Imaging the response to DNA damage in heterochromatin domains reveals core principles of heterochromatin maintenance. Fortuny et al.

description: Original data used in our publication by Fortuny et al., 2021, including original microscopy images, western-blot scans, FACS data and results of image analyses. Folders are organized as Main Figures, Supplementary Figures and Supplementary videos with a subfolder for each figure panel. We dissect the mechanisms for pericentric heterochromatin maintenance following UV damage in mammalian cells.
DOI: 10.17632/ypnng97rdg.2
title: A diffusible signal factor of the intestine dictates Salmonella invasion through its direct control of the virulence activator HilD

description: This is the dataset of the publication A diffusible signal factor of the intestine dictates Salmonella invasion through its direct control of the virulence activator HilD. This contains all the data used to make figures produced in this paper.
DOI: 10.25919/3qd7-w074
title: Parkes observations for project P595 semester 2020OCTS_12

description: We propose to continue the PULSE@Parkes project in which high school students from Australia and around the World use the Parkes radio telescope in a remote observing model to observe and analyse pulsar data. The data from some PULSE@Parkes observations are used to support the FERMI Gamma ray mission, other observations supplement the P456 Pulsar Timing Array project and the remainder were chosen in order to make a detailed analysis of pulsar timing irregularities and intermittency.
DOI: 10.6073/pasta/73056be98f1f4482940908cf5786d742
title: SBC LTER: Ocean: Currents and Biogeochemistry: Moored CTD and ADCP data from Mohawk Outside Spar (MKO), ongoing since 2005

description: ADCP (Currents), CTD (Hydrography) and Optics data (Fluorescence, Beam Attenuation and Volume Scattering Function) were collected at Mohawk Reef in the Santa Barbara Channel (site ID: MKO). Data have been interpolated to a 20 minute interval. ADCP data are binned at a 0.5 meter interval, measured as height from the bottom to a maximum of 16 bins. All bins may not be filled, and in some cases, data from bins technically above the surface are included. VSF data are available at angles, 100, 125 and 150 degrees. CTD parameters include Pressure, Temperature, Conductivity, Salinity, Density and Fluorescence. The CTD array is located approximately 4.5 meters from the surface, and there are additional temperature thermistors near the CTD array, at the bottom, and mid way between these two.
DOI: 10.5281/zenodo.4579864
title: Accuracy, bias, and improvements in mapping crops and cropland across the United States using the USDA Cropland Data Layer; Data associated with Lark et al. 2021

description: Results and data associated with Lark et al. 2021: Accuracy, Bias, and Improvements in Mapping Crops and Cropland across the United States Using the USDA Cropland Data Layer. Accuracy data for original, non-aggregated CDL classes are located in the following files: 'NASS_CDL_National_20XX_original_accuracy' files contain each year's data and calculation results for original, non-aggregated CDL classes 'Nationwide_original_CDL_accuracy_2008to2017_w_ref_area' is the nationwide reference producers and users accuracy for average crops, average non-crops, and the individual classes for all years. 'State_level_annual_ref_acreage' is the percent of reference acreage for both crops and non-crops by each state and national total for all years, used for the area-weighting calculations. Accuracy data for aggregated CDL classes are located in the following files: 'NASS_CDL_National_20XX_superclass_accuracy' files contain tables for each year that include the total and reference acreage of the datasets, the users and producers superclass accuracies for the individual classes, and consolidated crop and consolidated non-crop accuracy, as well as the raw and intermediate data used to calculate these results. 'Annual_CDL_superclass_accuracy_by_state_crop_noncrop' contains the average crop and non-crop superclass accuracies (i.e. the consolidated crop and consolidated non-crop accuracy) for the nation and for the individual states for all years. Citation: Lark TJ, Schelly IH, Gibbs HK. Accuracy, Bias, and Improvements in Mapping Crops and Cropland across the United States Using the USDA Cropland Data Layer. <em>Remote Sensing</em>. 2021; 13(5):968. https://doi.org/10.3390/rs13050968
DOI: 10.5281/zenodo.4579863
title: Accuracy, bias, and improvements in mapping crops and cropland across the United States using the USDA Cropland Data Layer; Data associated with Lark et al. 2021

description: Results and data associated with Lark et al. 2021: Accuracy, Bias, and Improvements in Mapping Crops and Cropland across the United States Using the USDA Cropland Data Layer. Accuracy data for original, non-aggregated CDL classes are located in the following files: 'NASS_CDL_National_20XX_original_accuracy' files contain each year's data and calculation results for original, non-aggregated CDL classes 'Nationwide_original_CDL_accuracy_2008to2017_w_ref_area' is the nationwide reference producers and users accuracy for average crops, average non-crops, and the individual classes for all years. 'State_level_annual_ref_acreage' is the percent of reference acreage for both crops and non-crops by each state and national total for all years, used for the area-weighting calculations. Accuracy data for aggregated CDL classes are located in the following files: 'NASS_CDL_National_20XX_superclass_accuracy' files contain tables for each year that include the total and reference acreage of the datasets, the users and producers superclass accuracies for the individual classes, and consolidated crop and consolidated non-crop accuracy, as well as the raw and intermediate data used to calculate these results. 'Annual_CDL_superclass_accuracy_by_state_crop_noncrop' contains the average crop and non-crop superclass accuracies (i.e. the consolidated crop and consolidated non-crop accuracy) for the nation and for the individual states for all years. Citation: Lark TJ, Schelly IH, Gibbs HK. Accuracy, Bias, and Improvements in Mapping Crops and Cropland across the United States Using the USDA Cropland Data Layer. <em>Remote Sensing</em>. 2021; 13(5):968. https://doi.org/10.3390/rs13050968
DOI: 10.5281/zenodo.4582725
title: Oyster Clusters in ply format and refuge editing file in bin format (CloudCompare)

description: These are oyster cluster mesh files (ply) that were achieved through micro CT-scanning. The original file was processed through the VG Studio Max and compressed to 0.5 micrometer. The objective of the project was to extract the top surface (~5cm from the outside) of oyster clusters where macro invertebrates mostly use. To the uploaded oyster cluster files, we applied the Hidden Point Removal algorithm through the Arothron package in R and attained the top surface. Here, we also uploaded the Cluster50_three_species*.bin (through CloudCompare) file which was used to edit the refuge space analysis.
DOI: 10.5281/zenodo.4582724
title: Oyster Clusters in ply format and refuge editing file in bin format (CloudCompare)

description: These are oyster cluster mesh files (ply) that were achieved through micro CT-scanning. The original file was processed through the VG Studio Max and compressed to 0.5 micrometer. The objective of the project was to extract the top surface (~5cm from the outside) of oyster clusters where macro invertebrates mostly use. To the uploaded oyster cluster files, we applied the Hidden Point Removal algorithm through the Arothron package in R and attained the top surface. Here, we also uploaded the Cluster50_three_species*.bin (through CloudCompare) file which was used to edit the refuge space analysis.
DOI: 10.5281/zenodo.4583997
title: Sale for Super Store

description: Sale Analysis
DOI: 10.5281/zenodo.4583996
title: Sale for Super Store

description: Sale Analysis
DOI: 10.5281/zenodo.4582361
title: 3D genomics across the tree of life reveals condensin II as a determinant of architecture type

description: GAMinG script (python) and sequence file (.dat) to prepare files to run molecular dynamics in GROMACS (see ndb.rice.edu for more info regarding how to run the simulations). Two .hic maps and two sample trajectory files for high and low lengthwise compaction (binary format, see ndb.rice.edu for the conversion of .cndb to other formats) corresponding to fig 4 in the main text. There are also two aggregate chromosome analysis (ACA) hic maps corresponding to lower (CAPH2) and higher (WT) compaction.
DOI: 10.5281/zenodo.4582360
title: 3D genomics across the tree of life reveals condensin II as a determinant of architecture type

description: GAMinG script (python) and sequence file (.dat) to prepare files to run molecular dynamics in GROMACS (see ndb.rice.edu for more info regarding how to run the simulations). Two .hic maps and two sample trajectory files for high and low lengthwise compaction (binary format, see ndb.rice.edu for the conversion of .cndb to other formats) corresponding to fig 4 in the main text. There are also two aggregate chromosome analysis (ACA) hic maps corresponding to lower (CAPH2) and higher (WT) compaction.
DOI: 10.6073/pasta/982ae2643c80dd5b64aedca03da24ecb
title: SBC LTER: Ocean: Currents and Biogeochemistry: Moored CTD and ADCP data from Alegria Reef Mooring (ALE), ongoing since 1999

description: ADCP (Currents), CTD (Hydrography) and Optics data (Fluorescence, Beam Attenuation and Volume Scattering Function) were collected at Alegria in the Santa Barbara Channel (site ID: ALE). Data have been interpolated to a 20 minute interval. ADCP data are binned at a 1.0 meter interval, measured as height from the bottom to a maximum of 16 bins. All bins may not be filled, and in some cases, data from bins technically above the surface are included. VSF data are available at angles, 100, 125 and 150 degrees. CTD parameters include Pressure, Temperature, Conductivity, Salinity, Density and Fluorescence. The CTD array is located approximately 4.5 meters from the surface, and there are additional temperature thermistors near the CTD array, at the bottom, and mid way between these two.
DOI: 10.5281/zenodo.4584038
title: Predicting the Risk of Rupture for Vertebral Aneurysm based on Geometric Features of Blood Vessels / first release code

description: This is the first release of the code for the paper <em>Predicting the Risk of Rupture for Vertebral Aneurysm</em> <em>based on Geometric Features of Blood Vessels</em>.
DOI: 10.6084/m9.figshare.14167103
title: Data Set figshare

description: This data set contains the scores (in units of time, seconds) of participants in a study. The higher the score, the higher the pain threshold or tolerance of the individual. Denotations are made to illustrate the "massage" or "no massage" protocol.
DOI: 10.6084/m9.figshare.14167103.v1
title: Data Set figshare

description: This data set contains the scores (in units of time, seconds) of participants in a study. The higher the score, the higher the pain threshold or tolerance of the individual. Denotations are made to illustrate the "massage" or "no massage" protocol.
DOI: 10.15482/usda.adc/1520927
title: Data from: Genomic regions associated with Mycoplasma ovipneumoniae presence in nasal secretions of domestic sheep.
DOI: 10.7277/rnv4-w023
title: Inelastic Web Crushing Performance Limits of High-Strength-Concrete Structural Walls (NEES-2005-0078)

description: &lt;p&gt;&lt;strong&gt;Title&lt;/strong&gt;: Inelastic Web Crushing Performance Limits of High-Strength-Concrete Structural Walls (NEES-2011-0078)&lt;/p&gt; &lt;p&gt;&lt;b&gt;Year Of Curation: &lt;/b&gt;2011&lt;/p&gt; &lt;p&gt;&lt;b&gt;Description: &lt;/b&gt;Recent research findings indicate that the design of high-capacity shear walls with stable ductile behavior is possible if rational failure modes that can effectively make use of the high strength and crack control properties provided by high-performance concrete are taken into account. The evaluation of dependable limits on the web crushing behavior of high-strength con-crete wall elements within the performance-based framework will allow designers to achieve higher strength for less weight, reduced material use, and lower life-cycle costs due to improved durability to adverse environmental effects.This NEESR-II-05 project has as a goal to establish acceptable limits on the elastic and inelastic shear strength of structural walls and structural wall assemblies. These limits, which are expected to be much higher than current code prescriptions, may permit the design a new generation of low-weight and low-reinforced concrete members and the integration of performance-based criteria into standard design vocabulary for structural walls. &lt;/p&gt; &lt;p&gt;&lt;b&gt;Award: &lt;/b&gt;http://www.nsf.gov/awardsearch/showAward?AWD_ID=0530634&lt;/p&gt; &lt;p&gt;&lt;b&gt;PIs &amp; CoPIs: &lt;/b&gt;Rigoberto Burgueno, Eric Hines&lt;/p&gt; &lt;p&gt;&lt;b&gt;Dates: &lt;/b&gt;July 10, 2000 - October 02, 2008&lt;/p&gt; &lt;p&gt;&lt;b&gt;Organizations: &lt;/b&gt;&lt;br /&gt; Michigan State University, MI, United States&lt;br /&gt; Tufts University, MA, United States&lt;br /&gt; University of California, San Diego, CA, United States&lt;br /&gt; University of Minnesota-Twin Cities, MN, United States&lt;/p&gt; &lt;p&gt;&lt;b&gt;Facilities: &lt;/b&gt;&lt;br /&gt; Michigan State University, MI, United States&lt;br /&gt; Tufts University, MA, United States&lt;br /&gt; University of California, San Diego, CA, United States&lt;br /&gt; University of Minnesota-Twin Cities, MN, United States&lt;b&gt;Sponsor: &lt;/b&gt;NSF - 0530634 &lt;/p&gt; &lt;p&gt;&lt;b&gt;Keywords: &lt;/b&gt;High-Strength Concrete,Reinforced Concrete,Structural Walls,Web Crushing&lt;/p&gt; &lt;p&gt;&lt;b&gt;Publications: &lt;/b&gt;&lt;br /&gt; &quot;Final Research Report on HSC Wall Assemblies&quot;&lt;br /&gt; &quot;Final Research Report on HSC Cantilever Walls&quot;&lt;br /&gt; &quot;Final Research Report on Finite Element Analysis of HSC Structural Walls&quot;&lt;/p&gt; &lt;nb:citations&gt;&lt;/nb:citations&gt;
DOI: 10.6084/m9.figshare.14167133
title: Abraham_2021_Tswalu_faecal_dataset

description: Data generated and analysed in Abraham et al. (2021) Large predators can mitigate nutrient losses associated with off-site animal removal from a wildlife reserve
DOI: 10.6084/m9.figshare.14167133.v1
title: Abraham_2021_Tswalu_faecal_dataset

description: Data generated and analysed in Abraham et al. (2021) Large predators can mitigate nutrient losses associated with off-site animal removal from a wildlife reserve
DOI: 10.6069/2mzz-6b61
title: Data associated with "Ice-Shelf Retreat Drives Recent Pine Island Glacier Speedup” and "Ocean-Induced Melt Volume Directly Paces Ice Loss from Pine Island Glacier"

description: Speedup of Pine Island Glacier over the last several decades has made it Antarctica’s largest contributor to sea-level rise. The past speedup is largely due to grounding-line retreat in response to ocean-induced thinning that reduced ice-shelf buttressing. These data are the model inputs and other observations associated with two papers that use an ice-flow model to investigate recent speedup of Pine Island Glacier, along with how continued melting may affect the glacier over the next 200 years.
DOI: 10.6073/pasta/0faed93009eff16a61d90467170eab7d
title: SBC LTER: Ocean: Currents and Biogeochemistry: Moored CTD and ADCP data from Santa Barbara Harbor Mooring (SBH), ongoing since 1999

description: CTD (Hydrography) data were collected at Santa Barbara Harbor (site ID: SBH). Data have been interpolated to a 20 minute interval. The CTD data for this site are harvested from SCCOOS ( http://sccoos.org/ ) and processed in Matlab.
DOI: 10.5517/ccdc.csd.cc24rgzc
title: CCDC 1988773: Experimental Crystal Structure Determination

description: Related Article: Addi Dana Sánchez-Pacheco, Mónica Hernández-Vergara, Everardo Jaime-Adán, Simón Hernández-Ortega, Jesús Valdés-Martínez|2021|J.Mol.Struct.|1234|130136|doi:10.1016/j.molstruc.2021.130136
DOI: 10.5517/ccdc.csd.cc248k22
title: CCDC 1974423: Experimental Crystal Structure Determination

description: Related Article: Nokwanda Tsaulwayo, Robert T. Kumah, Stephen O. Ojwach|2021|Polyhedron|197|115034|doi:10.1016/j.poly.2021.115034
DOI: 10.5519/qd.c8smtiy0
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (0 records)
DOI: 10.15482/usda.adc/1520928
title: Data from: Matrix Recharge of Vertic Forest Soil by Flooding
DOI: 10.5281/zenodo.4583797
title: Raw NGS Data for "Mapping the Functional Landscape of the Receptor Binding Domain of T7 Bacteriophage by Deep Mutational Scanning"

description: This directory contains relevant fastq files used for DMS analysis in the publication “Mapping the Functional Landscape of the Receptor Binding Domain of T7 Bacteriophage by Deep Mutational Scanning”. Note if one is looking for functional scoring for each variant, a complete summary of functional scoring on each host is available in a dramatically more convenient excel file attached as Source Data for Figure 2 and Figure 4 in the publication. Fastq files for each replicate are already split with the name of the folder or file noting the host used for selection and number of infection cycles or using an L code which indicates the following: L4. rfaD 1x 1st replicate L5. rfaG 1x 1st replicate L6. 10G 4x 2nd replicate L7. BW25113 4x 1st replicate L8. BL21 4x 1st replicate L9. rfaD 4x 1st replicate L10. rfaG 4x 1st replicate L17. rfaD 1x 2nd replicate L18. rfaG 1x 2nd replicate L19. 10G 4x 3rd replicate L20. BW25113 4x 2nd replicate L21. BL21 4x 2nd replicate L22. rfaD 4x 2nd replicate L23. rfaG 4x 2nd replicate L27. rfaG 1x 3rd replicate L28. BW25113 4x 3rd replicate L29. BL21 4x 3rd replicate L30. rfaD 4x 3rd replicate L31. rfaG 4x 3rd replicate L32. Expression Library DNAse Treated L33. 10G 1st Replicate Sanity Check The data analysis performed uses the scripts located here https://github.com/raman-lab/oracle, and more explicit instructions can be found in the methods section of the publication. Data can be further split by internal barcodes as noted in the paper for technical replicates. Also note we have since updated the scripts we use for this kind of analysis (they are now better, faster, stronger etc.) so if you have come here to compare notes on that regard feel free to reach out and we can provide more recent guidance. Cheers!