cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17055231
title: Thesis - Supplementary data 3.2. TPMs for all IWGSC RefSeq v1.1 genes in sub-spike RNA-seq samples

description: Description:This dataset contains RNA-seq derived transcript per million (TPM) values for all wheat genes expressed in the sub-spike tissue. It also includes differential expression results generated using DESeq2, and multiple functional annotations integrated from external sources to aid interpretation.

Content overview:





TPM expression matrices




Differential expression (DE) results (DESeq2 outputs)




Candidate gene lists




Functional annotations including:





Homoeologue group numbers and TF family assignments from Evans et al., 2022 (doi: 10.1093/g3journal/jkac147)




Hormone-related annotations from Max et al., 2022 (Zenodo dataset, doi: 10.5281/zenodo.7082848)




Homoeologue group numbers and InterPro annotations from Ensembl Plants




Gene Ontology (GO) term: IWGSC RefSeq v2.1




Functional descriptions from FunRiceGenes




Comparative analysis to RNA-seq in barley: Walla et al., 2020 (doi: 10.1104/pp.20.00087)
DOI: 10.5281/zenodo.17220087
title: Thesis - Supplementary data 3.2. TPMs for all IWGSC RefSeq v1.1 genes in sub-spike RNA-seq samples

description: Description:This dataset contains RNA-seq derived transcript per million (TPM) values for all wheat genes expressed in the sub-spike tissue. It also includes differential expression results generated using DESeq2, and multiple functional annotations integrated from external sources to aid interpretation.

Content overview:





TPM expression matrices




Differential expression (DE) results (DESeq2 outputs)




Candidate gene lists




Functional annotations including:





Homoeologue group numbers and TF family assignments from Evans et al., 2022 (doi: 10.1093/g3journal/jkac147)




Hormone-related annotations from Max et al., 2022 (Zenodo dataset, doi: 10.5281/zenodo.7082848)




Homoeologue group numbers and InterPro annotations from Ensembl Plants




Gene Ontology (GO) term: IWGSC RefSeq v2.1




Functional descriptions from FunRiceGenes




Comparative analysis to RNA-seq in barley: Walla et al., 2020 (doi: 10.1104/pp.20.00087)
DOI: 10.15468/dl.3gkbxm
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Steatoda bipunctata",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 64 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026941-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tc4umn
title: Occurrence Download

description: A dataset containing 739 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhamnus formosana",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 739 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026942-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dn644x
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Theridion melanurum",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026943-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.by4qc3
title: Occurrence Download

description: A dataset containing 247 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sageretia randaiensis",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 247 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026944-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ruq9mw
title: Occurrence Download

description: A dataset containing 3524580 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plantae, Undaria pinnatifida)",
 "Country is New Zealand",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 0",
 "DecimalLongitude is greater than or equal to -180",
 "DecimalLatitude is greater than or equal to -90",
 {
 "not" : {
 "or" : [
 "Issue is Zero coordinate",
 "Issue is Coordinate out of range",
 "Issue is Country coordinate mismatch"
 ]
 }
 }
 ]
}

 The dataset includes 3524580 records from 292 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026927-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3efb2s
title: Occurrence Download

description: A dataset containing 127835 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Avena fatua)"
 ]
}

 The dataset includes 127835 records from 1557 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026933-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sf4f8f
title: Occurrence Download

description: A dataset containing 1605087 species occurrences available in GBIF matching the query:
{
 "PublishingOrg" : [
 "is 493fe050-055d-11d8-b84f-b8a03c50a862"
 ]
}

 The dataset includes 1605087 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069399-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rjfkwr
title: Occurrence Download

description: A dataset containing 194 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtococcum multinode (Lam.) Clayton"
 ]
}

 The dataset includes 194 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161256-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cntvba
title: Occurrence Download

description: A dataset containing 78 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Araujia brachystephana (Griseb.) Fontella & Goyder"
 ]
}

 The dataset includes 78 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005012-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nm26ua
title: Occurrence Download

description: A dataset containing 555 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtococcum trigonum (Retz.) A.Camus"
 ]
}

 The dataset includes 555 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161270-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gjz9d4
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lupinus ramosissimus Benth."
 ]
}

 The dataset includes 101 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005012-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2unmnn
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lepidomicrosorium buergerianum (Miq.) Ching & K.H.Shing",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005012-170627171947987/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.drkh2e
title: Occurrence Download

description: A dataset containing 8786 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Colección de Reptiles del Instituto de Investigación de Recursos Biológicos Alexander von Humboldt (IAvH-R)"
 ]
}

 The dataset includes 8786 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161271-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.34zh4g
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Achlys japonica Maxim.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161314-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y2dlmc
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pezoporus occidentalis (Gould, 1861)"
 ]
}

 The dataset includes 99 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005012-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.holhas
title: Occurrence Download

description: A dataset containing 330046 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Broedvogels - Atlas of the breeding birds in Flanders 2000-2002"
 ]
}

 The dataset includes 330046 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005013-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dkpe6p
title: Occurrence Download

description: A dataset containing 5148 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Colección de Reptiles - Museo de Herpetología de la Universidad de Antioquia"
 ]
}

 The dataset includes 5148 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161282-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nxow0j
title: Occurrence Download

description: A dataset containing 3076 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Geranospiza caerulescens (Vieillot, 1817)"
 ]
}

 The dataset includes 3076 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005013-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xrxv32
title: Occurrence Download

description: A dataset containing 51533 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tachyphonus coronatus (Vieillot, 1822)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 51533 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161288-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jmudev
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Callosciurus finlaysonii (Horsfield, 1823)",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-1.67 37.57,-1.67 50.14,25.88 50.14,25.88 37.57,-1.67 37.57))",
 "Year 1960-2020"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005013-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ntd8fv
title: Occurrence Download

description: A dataset containing 256 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtopodium brandonianum Barb.Rodr."
 ]
}

 The dataset includes 256 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161281-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5dm2jx
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-76.00486 -30.38729,-61.92336 -30.38729,-62.4069 -14.0512,-72.32804 -14.90158,-76.00486 -20.75001,-76.00486 -30.38729))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Nototriche pulvinata A.W.Hill"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161316-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yfwwhs
title: Occurrence Download

description: A dataset containing 101138 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ambystoma Tschudi, 1838"
 ]
}

 The dataset includes 101138 records from 132 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005013-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3jmg5d
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtopodium witeckii L.C.Menezes"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161389-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sij1dd
title: Occurrence Download

description: A dataset containing 559 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cynophalla retusa (Griseb.) Cornejo & Iltis"
 ]
}

 The dataset includes 559 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005013-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q8ha7b
title: Occurrence Download

description: A dataset containing 626 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtorchis arcuata (Lindl.) Schltr."
 ]
}

 The dataset includes 626 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161395-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hlmjpw
title: Occurrence Download

description: A dataset containing 45159 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is VIS - Fishes in estuarine waters in Flanders, Belgium"
 ]
}

 The dataset includes 45159 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005014-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7zbxgt
title: Occurrence Download

description: A dataset containing 156 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtopodium aliciae L.Linden & Rolfe"
 ]
}

 The dataset includes 156 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161274-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k47h6f
title: Occurrence Download

description: A dataset containing 192 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation"
 ]
 },
 "MediaType is Image",
 "TaxonKey is Berberidopsidales"
 ]
}

 The dataset includes 192 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0391835-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ku77y
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtopodium cipoense L.C.Menezes"
 ]
}

 The dataset includes 21 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161295-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qbqe6i
title: Occurrence Download

description: A dataset containing 259 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Geranospiza caerulescens (Vieillot, 1817)",
 "Country is Brazil"
 ]
}

 The dataset includes 259 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005014-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hkpy3p
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtopodium caiapoense L.C.Menezes"
 ]
}

 The dataset includes 19 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161294-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aedh0d
title: Occurrence Download

description: A dataset containing 235 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Callosciurus notatus (Boddaert, 1785)",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((79.15 -14.70,79.15 19.79,134.25 19.79,134.25 -14.70,79.15 -14.70))",
 "Year 1960-2020"
 ]
}

 The dataset includes 235 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005014-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s9d238
title: Occurrence Download

description: A dataset containing 820050 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 820050 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161286-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.njfwkv
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lupinus semperflorens Hartw. ex Benth."
 ]
}

 The dataset includes 49 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005014-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k28px2
title: Occurrence Download

description: A dataset containing 243 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtopodium glutiniferum Raddi"
 ]
}

 The dataset includes 243 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161312-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bgmlmr
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lepidomicrosorium laojunense Ching & K.H.Shing",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005014-170627171947987/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4md4tg
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtopodium ×intermedium Brade"
 ]
}

 The dataset includes 24 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161324-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqbl7o
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Microlophus theresioides (Donoso-Barros, 1966)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 14 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005014-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bjrkzm
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtorchis hamata (Rolfe) Schltr."
 ]
}

 The dataset includes 102 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161409-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.