cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12367460
title: Potamo_mt_function_stats

description: R code and analysis for Greimann et al 2020
DOI: 10.6084/m9.figshare.12367460.v1
title: Potamo_mt_function_stats

description: R code and analysis for Greimann et al 2020
DOI: 10.6084/m9.figshare.12367541
title: Globus pallidus dynamics reveal covert strategies for behavioral inhibition

description: This is the data that was used for a paper titled 'Globus pallidus dynamics reveal covert strategies for behavioral inhibition.' Format and organization is written in the ReadMe.txt file. <br>
DOI: 10.6084/m9.figshare.12367541.v1
title: Globus pallidus dynamics reveal covert strategies for behavioral inhibition

description: This is the data that was used for a paper titled 'Globus pallidus dynamics reveal covert strategies for behavioral inhibition.' Format and organization is written in the ReadMe.txt file. <br>
DOI: 10.6084/m9.figshare.12367403
title: Los portavoces oficiales y la estrategia audiovisual en la crisis del Covid-19 en España*

description: <br>
DOI: 10.6084/m9.figshare.12367427
title: Raw data, 1/4

description: An. gambiae, coluzzii, and funestus amplicon sequencing reads, raw reads, lane 1 of 4<br>
DOI: 10.6084/m9.figshare.12367394
title: Pilot data, 2/2

description: An. gambiae, coluzzii, and funestus amplicon sequencing reads, pilot data, 2/2
DOI: 10.6084/m9.figshare.12367427.v1
title: Raw data, 1/4

description: An. gambiae, coluzzii, and funestus amplicon sequencing reads, raw reads, lane 1 of 4<br>
DOI: 10.6084/m9.figshare.12367394.v1
title: Pilot data, 2/2

description: An. gambiae, coluzzii, and funestus amplicon sequencing reads, pilot data, 2/2
DOI: 10.6084/m9.figshare.12367382
title: Avian egg collections: museum collection bias driven by shape and size

description: Provided are the raw dataset (csv.file) and R script used for the manuscript by Thompson & Birkhead (2020) Avian egg collections: museum collection bias driven by shape and size(DOI:10.1111/jav.02507)
DOI: 10.6084/m9.figshare.12367352
title: OI and OC Covariance Matrices.xlsx

description: The excel gives the inter-item correlations and covariance for organizational innovativeness (OI) and organizational culture (OC).
DOI: 10.6084/m9.figshare.12367403.v2
title: Los portavoces oficiales y la estrategia audiovisual en la crisis del Covid-19 en España*

description: La crisis del Covid-19 ha desestabilizado el sistema comunicativo mundial difuminando algunas de las fronteras de disciplinas como la comunicación política y la comunicación corporativa, o implantando fenómenos nuevos que hasta el momento no se habían conocido como la competencia del <i>day time</i>televisivo frente al <i>prime time</i>. Este artículo parte del estudio del papel que han tenido los portavoces oficiales en la estrategia de comunicación de crisis del Gobierno. En este contexto, se estudian también los cambios operados en la estructura televisiva; el predominio de la comunicación política sobre la comunicación corporativa, y el papel que han jugado los portavoces gubernamentales como <i>influencers</i>.
DOI: 10.6084/m9.figshare.12367352.v1
title: OI and OC Covariance Matrices.xlsx

description: The excel gives the inter-item correlations and covariance for organizational innovativeness (OI) and organizational culture (OC).
DOI: 10.6084/m9.figshare.12367382.v1
title: Avian egg collections: museum collection bias driven by shape and size

description: Provided are the raw dataset (csv.file) and R script used for the manuscript by Thompson & Birkhead (2020) Avian egg collections: museum collection bias driven by shape and size(DOI:10.1111/jav.02507)
DOI: 10.6084/m9.figshare.12367403.v1
title: Los portavoces oficiales y la estrategia audiovisual en la crisis del Covid-19 en España*

description: La crisis del Covid-19 ha desestabilizado el sistema comunicativo mundial difuminando algunas de las fronteras de disciplinas como la comunicación política y la comunicación corporativa, o implantando fenómenos nuevos que hasta el momento no se habían conocido como la competencia del <i>day time</i>televisivo frente al <i>prime time</i>. Este artículo parte del estudio del papel que han tenido los portavoces oficiales en la estrategia de comunicación de crisis del Gobierno. En este contexto, se estudian también los cambios operados en la estructura televisiva; el predominio de la comunicación política sobre la comunicación corporativa, y el papel que han jugado los portavoces gubernamentales como <i>influencers</i>.
DOI: 10.6084/m9.figshare.12367337
title: Pilot data, 1/2

description: An. gambiae, coluzzii, and funestus amplicon sequencing reads, pilot data, 1/2
DOI: 10.6084/m9.figshare.12367337.v2
title: Pilot data, 1/2

description: An. gambiae, coluzzii, and funestus amplicon sequencing reads, pilot data, 1/2
DOI: 10.6084/m9.figshare.12367301
title: Raw data.xlsx

description: Raw data from <b>Cyatheaceae as phorophytes: diversity and phytosociology of vascular epiphytes on tree ferns</b><b><br></b><b><br></b>
DOI: 10.6084/m9.figshare.12367337.v1
title: Pilot data, 1/2

description: An. gambiae, coluzzii, and funestus amplicon sequencing reads, pilot data, 1/2
DOI: 10.6084/m9.figshare.12367268
title: Late Mesozoic and Cenozoic thermo-tectonic history of Eastern, Central and Southern Mexico as determined through integrated thermochronology, with implications for sediment delivery to the Gulf of Mexico.

description: U-Pb analytical data Table S1.
DOI: 10.6084/m9.figshare.12367265
title: Yeast 4 strains chemical genomics - raw colony sizes

description: Raw colony sizes used to compute the chemical genomics data of gene knock-outs (KO) across 4 yeast genetic backgrounds (i.e. Saccharomyces cerevisiae strains). This data represents the colony size in pixels after surface correction (columns "surface-corrected") and colony border normalization ("normalized"). Further details can be found in the "Chemical genomic data analysis" section in the referenced paper (doi: 10.15252/msb.20198831) and can be reproduced using the data and script provided in the repository associated with the paper (https://github.com/mgalardini/2018koyeast, in particular this script: https://github.com/mgalardini/2018koyeast/blob/master/src/correct_raw_sizes.py).<br>
DOI: 10.6084/m9.figshare.12367268.v1
title: Late Mesozoic and Cenozoic thermo-tectonic history of Eastern, Central and Southern Mexico as determined through integrated thermochronology, with implications for sediment delivery to the Gulf of Mexico.

description: U-Pb analytical data Table S1.
DOI: 10.6084/m9.figshare.12367277.v1
title: Supplementary Material - SMS on IF for TDM

description: Supplementary Material of the paper "Bridging the Gap: A Perception of How Intelligent Techniques Support Technical Debt Management!
DOI: 10.6084/m9.figshare.12367277.v2
title: Supplementary Material - SMS on ITs for TDM activities

description: Supplementary Material of the paper "Bridging the Gap: A Perception of How Intelligent Techniques Support Technical Debt Management Activities
DOI: 10.6084/m9.figshare.12366929
title: Precise cache detection by olfaction in a scatter-hoarder bird

description: This dataset belongs to an experiment about the use of olfaction in the detection of buried nuts by magpies, a scatter-hoarder bird. The dataset contains the following variables.<b>-Site</b>= Describe the two areas where the study was conducted, Huerta de la Paloma farm and IFAPA research station<b>-Plot</b>refers to the area used in the experiment where nuts were buried that consisted of three subplots<b>-Subplot</b>= Area 1.5 x 1.5 m in each plot. Each plot contains three subplots.<b>-Position</b>= Nuts (four treatments) were buried randomly in each subplot. This variable shows the position of each nut in each subplot.<b>-Treatment</b>= Treatments used in the experiment:Shell= Natural nutshells with soil; Diesel= Natural nuts coated with diesel; 3D= 3D-printed nuts; Natural= Untreated nuts of common walnut <b>-Detected</b>= Nuts detected by magpies1= Detected 0= Non detected<b>-Time dectection</b>= Time in days. <b>-Abandon</b>= Nuts that were detected but abandoned by magpies1= nut abandonment after detection.0= Nut removed after detection
DOI: 10.6084/m9.figshare.12366929.v1
title: Precise cache detection by olfaction in a scatter-hoarder bird

description: This dataset belongs to an experiment about the use of olfaction in the detection of buried nuts by magpies, a scatter-hoarder bird. The dataset contains the following variables.<b>-Site</b>= Describe the two areas where the study was conducted, Huerta de la Paloma farm and IFAPA research station<b>-Plot</b>refers to the area used in the experiment where nuts were buried that consisted of three subplots<b>-Subplot</b>= Area 1.5 x 1.5 m in each plot. Each plot contains three subplots.<b>-Position</b>= Nuts (four treatments) were buried randomly in each subplot. This variable shows the position of each nut in each subplot.<b>-Treatment</b>= Treatments used in the experiment:Shell= Natural nutshells with soil; Diesel= Natural nuts coated with diesel; 3D= 3D-printed nuts; Natural= Untreated nuts of common walnut <b>-Detected</b>= Nuts detected by magpies1= Detected 0= Non detected<b>-Time dectection</b>= Time in days. <b>-Abandon</b>= Nuts that were detected but abandoned by magpies1= nut abandonment after detection.0= Nut removed after detection
DOI: 10.6084/m9.figshare.12366956.v1
title: DECM Machine Annotated Corpus

description: The DECM Corpus is a digital corpus of the texts of Relaciones Geográficas de Nueva España (the Geographic Reports of New Spain) with different versions, including a machine ready version, a gold standard annotated dataset, and an automatically annotated version ready for text mining and machine learning experiments.
DOI: 10.6084/m9.figshare.12366863
title: Word Covid-19 Research Focus 2020-01-01 to 2020-06-01

description: Centres of COVID-19-focused research by publication production. COVID-19 research is defined relative to the boxed query in this report. All numbers are derived from Dimensions
DOI: 10.6084/m9.figshare.12366869
title: tangqian.MlasF_ME2R.63samdata_170623.tar.gz

description: High throughput sequencing for pmoA genes of Methanotrophs
DOI: 10.6084/m9.figshare.12366827
title: tangqian.A189F_mb661R.64samdata_170623.tar.gz

description: High throughput sequencing for mcrA genes of methanogens
DOI: 10.6084/m9.figshare.12366827.v1
title: tangqian.A189F_mb661R.64samdata_170623.tar.gz

description: High throughput sequencing for mcrA genes of methanogens
DOI: 10.6084/m9.figshare.12366869.v1
title: tangqian.MlasF_ME2R.63samdata_170623.tar.gz

description: High throughput sequencing for pmoA genes of Methanotrophs
DOI: 10.6084/m9.figshare.12366863.v1
title: Word Covid-19 Research Focus 2020-01-01 to 2020-06-01

description: Centres of COVID-19-focused research by publication production. COVID-19 research is defined relative to the boxed query in this report. All numbers are derived from Dimensions
DOI: 10.6084/m9.figshare.12366725
title: ICSME-VSM-LSI.xlsx

description: data set for LSI and VSM
DOI: 10.6084/m9.figshare.12366725.v1
title: ICSME-VSM-LSI.xlsx

description: data set for LSI and VSM
DOI: 10.6084/m9.figshare.12366677
title: resultsPaper1.xlsx

description: data set for LSI and VSM
DOI: 10.6084/m9.figshare.12366863.v2
title: Word Covid-19 Research Focus 2020-01-01 to 2020-06-01

description: Centres of COVID-19-focused research by publication production. COVID-19 research is defined relative to the boxed query in this report. All numbers are derived from Dimensions
DOI: 10.6084/m9.figshare.12366671
title: tangqian.MlasF_ME2R.63samdata_170623.tar.gz

description: High throughput sequencing for pmoA genes of methanotrophs
DOI: 10.6084/m9.figshare.12366734.v1
title: DECM Gold Standard Corpus

description: The DECM Corpus is a digital corpus of the texts of Relaciones Geográficas de Nueva España (the Geographic Reports of New Spain) with different versions, including a machine ready version, a gold standard annotated dataset, and an automatically annotated version ready for text mining and machine learning experiments.This version contains a sample of the RGs manually annotated by multiple researchers with the software of our industry partner, Tagtog. This corpus has been used to carry out the NLP and ML experiments and the files are available in JSON and TSV format. These files are composed by texts and annotations. This is also accompanied by the DECM ontology which provides an explanation of the entities and labels produced. This corpus can be used for further experimentation with Artificial Intelligence methods.<br>
DOI: 10.6084/m9.figshare.12366671.v1
title: tangqian.MlasF_ME2R.63samdata_170623.tar.gz

description: High throughput sequencing for pmoA genes of methanotrophs
DOI: 10.6084/m9.figshare.12366677.v1
title: resultsPaper1.xlsx

description: data set for LSI and VSM
DOI: 10.6084/m9.figshare.12366626
title: SILVA_138_NR99_AutoTax

description: Improved version of the SILVA microbial taxonomic database version 138 NR99 as processed through AutoTax, see reference paper.
DOI: 10.6084/m9.figshare.12366638
title: tangqian.A189F_mb661R.64samdata_170623.tar.gz

description: High-throughput sequencing results for mcrA genes of methanogens in Lake Taihu
DOI: 10.6084/m9.figshare.12366626.v1
title: SILVA_138_NR99_AutoTax

description: Improved version of the SILVA microbial taxonomic database version 138 NR99 as processed through AutoTax, see reference paper.
DOI: 10.6084/m9.figshare.12366638.v1
title: tangqian.A189F_mb661R.64samdata_170623.tar.gz

description: High-throughput sequencing results for mcrA genes of methanogens in Lake Taihu
DOI: 10.6084/m9.figshare.12366620
title: SILVA_132_NR99_AutoTax

description: Improved version of the SILVA microbial taxonomic database version 132 NR99 as processed through AutoTax, see reference paper.
DOI: 10.6084/m9.figshare.12366620.v1
title: SILVA_132_NR99_AutoTax

description: Improved version of the SILVA microbial taxonomic database version 132 NR99 as processed through AutoTax, see reference paper.
DOI: 10.6084/m9.figshare.12366554
title: GC-MS-based metabolomics of BALB/c mice related to staphylococcal bloodstream infection

description: GC-MS-based metabolomics identifies host metabolites related to S. aureus infection.
DOI: 10.6084/m9.figshare.12366551
title: "Ring Breaker": Neural Network Driven Synthesis Prediction of the Ring System Chemical Space

description: data and models complementing our publication in the Journal of Medicinal Chemistry:https://pubs.acs.org/doi/abs/10.1021/acs.jmedchem.9b01919
DOI: 10.6084/m9.figshare.12366533
title: The embryonic Himalayan foreland basin revealed in the eastern Yarlung Zangbo suture zone

description: Table S1 Zircon LA-ICP-MS analytical data for the studied sandstones of the Langxian Fm and Langjiexue Group in Jiacha-Jindong area, the eastern YZSZ.Table S2 Trace element concentrations of marble samples from the Langxian Fm, Jiacha area (ppm).Table S3 Sr concentrations and isotopic ratios of marbles from Langxian Fm, the eastern YZSZ.Table S1 Zircon morphological data for the studied sandstones of the Langxian Fm and Langjiexue Group in Jiacha-Jindong area, the eastern YZSZ.Supplement-Figures S1-S6 <br>
DOI: 10.6084/m9.figshare.12366533.v1
title: The embryonic Himalayan foreland basin revealed in the eastern Yarlung Zangbo suture zone

description: Table S1 Zircon LA-ICP-MS analytical data for the studied sandstones of the Langxian Fm and Langjiexue Group in Jiacha-Jindong area, the eastern YZSZ.Table S2 Trace element concentrations of marble samples from the Langxian Fm, Jiacha area (ppm).Table S3 Sr concentrations and isotopic ratios of marbles from Langxian Fm, the eastern YZSZ.Table S1 Zircon morphological data for the studied sandstones of the Langxian Fm and Langjiexue Group in Jiacha-Jindong area, the eastern YZSZ.Supplement-Figures S1-S6 <br>
DOI: 10.6084/m9.figshare.12366500
title: Table 2. Distribution of the mollusc shells and other fossils in borehole O–VC15. Did an earthquake located off Jersey trigger a mudflow preserving the only loess outcrop actually known under the seas?

description: Table 2. Distribution of the mollusc shells and other fossils in borehole O–VC15.
DOI: 10.6084/m9.figshare.12366500.v1
title: Table 2. Distribution of the mollusc shells and other fossils in borehole O–VC15. Did an earthquake located off Jersey trigger a mudflow preserving the only loess outcrop actually known under the seas?

description: Table 2. Distribution of the mollusc shells and other fossils in borehole O–VC15.
DOI: 10.6084/m9.figshare.12366461
title: Repurposing approved drugs as inhibitors of SARS-CoV-2 S-protein from molecular modeling and virtual screening

description: Herein, molecular modeling techniques were used with the main goal to obtain candidates from a drug database as potential targets to be used against SARS-CoV-2. This novel coronavirus, responsible by the COVID-19 outbreak since the end of 2019, became a challenge since there is not vaccine for this disease. The first step in this investigation was to solvate the isolated S-protein in water for molecular dynamics (MD) simulation, being observed a transition from “up” to “down” conformation of receptor-binding domain (RBD) of the S-protein with angle of 54.3 and 43.0 degrees, respectively. The RBD region was more exposed to the solvent and to the possible drugs due to its enhanced surface area. From the equilibrated MD structure, virtual screening by docking calculations were performed using a library contained 9091 FDA approved drugs. Among them, 24 best-scored ligands (14 traditional herbal isolate and 10 approved drugs) with the binding energy below –8.1 kcal/mol were selected as potential candidates to inhibit the SARS-CoV-2 S-protein, preventing the human cell infection and their replication. For instance, the ivermectin drug (present in our list of promise candidates) was recently used successful to control viral replication <i>in vitro.</i> MD simulations were performed for the three best ligands@S-protein complexes and the binding energies were calculated using the MM/PBSA approach. Overall, it is highlighted an important strategy, some key residues, and chemical groups which may be considered on clinical trials for COVID-19 outbreak. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.12366461.v2
title: Repurposing approved drugs as inhibitors of SARS-CoV-2 S-protein from molecular modeling and virtual screening

description: Herein, molecular modeling techniques were used with the main goal to obtain candidates from a drug database as potential targets to be used against SARS-CoV-2. This novel coronavirus, responsible by the COVID-19 outbreak since the end of 2019, became a challenge since there is not vaccine for this disease. The first step in this investigation was to solvate the isolated S-protein in water for molecular dynamics (MD) simulation, being observed a transition from “up” to “down” conformation of receptor-binding domain (RBD) of the S-protein with angle of 54.3 and 43.0 degrees, respectively. The RBD region was more exposed to the solvent and to the possible drugs due to its enhanced surface area. From the equilibrated MD structure, virtual screening by docking calculations were performed using a library contained 9091 FDA approved drugs. Among them, 24 best-scored ligands (14 traditional herbal isolate and 10 approved drugs) with the binding energy below –8.1 kcal/mol were selected as potential candidates to inhibit the SARS-CoV-2 S-protein, preventing the human cell infection and their replication. For instance, the ivermectin drug (present in our list of promise candidates) was recently used successful to control viral replication <i>in vitro.</i> MD simulations were performed for the three best ligands@S-protein complexes and the binding energies were calculated using the MM/PBSA approach. Overall, it is highlighted an important strategy, some key residues, and chemical groups which may be considered on clinical trials for COVID-19 outbreak. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.12366449
title: SARS-CoV-2 genomes evolution

description: Table S1 The information of the first downloaded complete genome sequences Table S2 The sequence IDs in each Cluster Table S3 The details information of the SNVs in all Clusters Table S4 The information of death rate, frequencies of the 9 specific sites and major haplotypes in each country for 3624 and 16373 genomes respectively Table S5 All haplotypes of the 9 specific sites and numbers of them for 3624 and 16373 genomes respectively Table S6 Whole genome mutations and frequencies in each major haplotype subgroup of 3624 and 16373 genomes respectively
DOI: 10.6084/m9.figshare.12366440
title: Supplementary Material for: Long-Term Occupational Sleep Loss and Post-Retirement Cognitive Decline or Dementia

description: Introduction: Recent evidence suggests that poor sleep is a risk factor that contributes to the development of Alzheimer’s disease (AD). Most studies have focused on short-term effects of sleep deprivation on cognitive function, whereas longitudinal studies are limited to self-reported sleep and the risk of later-life dementia. Because sleep loss could be an early manifestation of neurodegenerative disease, reverse causality in these studies cannot be excluded. Objective: In this explorative, observational study, we investigated the effects of extended periods of extrinsically (work-related) caused sleep loss on later-life cognitive function, early dementia symptoms, and current sleep quality. Methods: We approached a community of retired male maritime pilots (approx. n = 500) through a newsletter. We investigated 50 respondents (mean age 71.7 years ± 7.7), with a history of &gt; 25 years of work on irregular schedules, which resulted in extended periods of sleep loss. Validated questionnaires on cognitive complaints (Cognitive Failure Questionnaire [CFQ]), early dementia symptoms (Early Dementia Questionnaire [EDQ]), current sleep quality (Pittsburgh Sleep Quality Index [PSQI] and sleep-wake diaries), quality of life (QoL, EQ-5D), and mood (Hospital Anxiety and Depression Scale [HADS]) were administered by a single investigator (J.T.), who also completed an observer rating of cognitive function. Results: Scores on the CFQ, EDQ, PSQI, EQ-5D, and HADS were within normal ranges adjusted for age, sex, and education. The observer rating was not indicative of cognitive decline. Conclusion: We found no evidence that long-term exposure to work-related sleep loss had resulted in cognitive decline or early dementia symptoms in this sample of retired maritime pilots.
DOI: 10.6084/m9.figshare.12366449.v1
title: SARS-CoV-2 genomes evolution

description: Table S1 The information of the first downloaded complete genome sequences Table S2 The sequence IDs in each Cluster Table S3 The details information of the SNVs in all Clusters Table S4 The information of death rate, frequencies of the 9 specific sites and major haplotypes in each country for 3624 and 16373 genomes respectively Table S5 All haplotypes of the 9 specific sites and numbers of them for 3624 and 16373 genomes respectively Table S6 Whole genome mutations and frequencies in each major haplotype subgroup of 3624 and 16373 genomes respectively