cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.rm382/4
title: Frog susceptibility dataset

description: Results of the laboratory frog susceptibility experiment described in Knapp et al. (2016). In this experiment, we collected Rana sierrae adults from each of three persistent populations (in which frogs have persisted with the amphibian chytrid fungs (Batrachochytrium dendrobatidis; Bd) for at least 10 years) and three Bd-naïve populations (that have never been exposed to Bd). In the laboratory, we exposed pairs of frogs (one from a persistent population and one from a naïve population) to one of four strains of Bd. Bd was cultured from two persistent frog populations and two populations in which frogs had recently experiencedBd-caused mass die offs (“die-off” populations). After Bdexposure, we measured Bd infection intensities (“loads”) on frogs over a 15-wk period. Additional details are provided in Knapp et al. (2016) and in the associated ReadMe file.
DOI: 10.5061/dryad.rm382/5
title: Frog susceptibility: SAS code used to analyze results from laboratory experiment

description: This SAS code was used to analyze the results obtained from the laboratory Rana sierrae susceptibility experiment. We used a model selection strategy to examine the effects of frog type (collected from a persistent or naïve population), frog source (one of six populations), Bd type (collected from a persistent or die-off population), Bd source (one of four populations), and interactions of these effects on Bd load [log10(zoospore equivalent [ZE] + 1)]. Additional details are provided in Knapp et al. (2016).
DOI: 10.5061/dryad.tb084/1
title: Pharmacy Immunisation Baseline and Exit Data

description: 1.Data from pharmacy baseline survey completed by pharmacy staff at the commencement of the project to gather information about pharmacy profiles;2. Data from end-of-project pharmacy exit survey completed by pharmacy staff to obtain information about services provided, adverse events, facilitators and challenges
DOI: 10.5061/dryad.tb084/2
title: Patient Immunisation Computer Records

description: Data from participating pharmacy computer records were collected and compiled mid-October 2015, several weeks after the end of the flu season.
DOI: 10.5061/dryad.tj247/1
title: common tern sex ratio data

description: Common tern hatchling and offspring sex in relation to year, parent ID, brood ID, parental age and parental sex. Collected between 1998 and 2013 by the Instute of Avian Research in Wilhelmshaven, Germany
DOI: 10.5061/dryad.tp324/1
title: Parnassius smintheus populations and weather

description: See ReadMe file
DOI: 10.17632/6js8zxm7tx.1
title: MOLECULAR-CELL-D-16-00031 Kong et al

description: Original unprocessed gels, blots, and AFM images analyzed for this manuscript.
DOI: 10.5061/dryad.1p2k0/1
title: Raw data for tree sizes, blocks, and treatments in the Cibola Tree Genetics and Productivity Experiment

description: This file contains the raw data for the sizes of trees in the Cibola tree genotype diversity and productivity experiment. Treatments and block locations are also indicated.
DOI: 10.5061/dryad.1p2k0/2
title: homecibola

description: This data file contains data on the home sites where genotypes were collected for the Cibola tree genotype diversity and productivity experiment. Tree leaf phenology data is also included (higher scores reflect greater leaf-off times over the course of a year).
DOI: 10.5061/dryad.1p2k0/3
title: Cibola microsatellite marker data

description: This file contains the microsatellite marker data for the Cibola genotype diversity and productivity experiment.
DOI: 10.5061/dryad.22dr1/1
title: Dsussmilchi_skull_small_tiffs

description: TIFF stack of tomographic scan data of the skull of Dipnorhynchus sussmilchi (Devonian lungfish)
DOI: 10.5061/dryad.2dc8k/1
title: Experimental Data

description: The x, y coordinates for fish in groups of n=10, at temporal resolution of 25 Hz (i.e. the frame rate).
DOI: 10.5061/dryad.2dc8k/2
title: Simulated Data

description: The x, y coordinates for simulated fish in groups of n=10, derived from the agent-based model.
DOI: 10.5061/dryad.2kd28/1
title: ESM_guide
DOI: 10.5061/dryad.3075h/1
title: Concatenated data matrix
DOI: 10.5061/dryad.34dn2/1
title: SuppInfo_accelerometer_data_dryad

description: Datafile in plain text containing detailed accelerometer data.First two columns are Date/Time. Act0 means number of sequences that scored 0 during the preceding hour (12 measurement sequences). Next columns Act1 to Act5 follow the same way. Column "check" is the sum of all activity counts and should be 12 if all sampling worked as intended. See doi: 10.1111/jav.01068 for  details on data collection and compilation.
DOI: 10.5061/dryad.3hk99/2
title: Water.Temperature.Data

description: Average daily water temperature between 2014-05-31 and 2014-09-22 for 10 Estonian Rivers
DOI: 10.5061/dryad.3hk99/3
title: qPCR.Cq.Tm.Data

description: Analysed qPCR data (yielding Cq and Tm) with sample information
DOI: 10.5061/dryad.3hk99/4
title: Sample.Info.Data

description: Length data for 112 brown trout individuals from 10 Estonian rivers
DOI: 10.5061/dryad.405g1/3
title: R codes in R mark down format

description: In this file are found all R codes used for the analyses.
DOI: 10.5061/dryad.405g1/4
title: Character State Coding Holocentric vs. Monocentric Description UPDATED

description: This is table cvs format. In the column are found species names as termed in the TimeTreeofLife2015. In the second and third column there are character state coding holocentric (1) vs. monocentric (0) for all species in the TimeTreeofLife2015. Coding in the column 3 was designed to avoid false holocentric chromosome positives and it was used for the analyses in the paper.
DOI: 10.5061/dryad.405g1/5
title: R codes in R mark down format UPDATED

description: In this file are found all R codes used for the analyses.
DOI: 10.5061/dryad.405g1/6
title: Supplementary Figure 1

description: SUP. FIG. 1. Phylogenetic tree of eukaryotes with 50,455 species derivate from the Time Tree of Life project. The ancestral state reconstruction of monocentric vs. holocentric chromosome based on BiSSE model is mapped on the branches using colors (blue for monocentric and red for holocentric). All groups with holocentric chromosomes are labeled in the phylogeny in red. Some representative groups of organisms with monocentric chromosomes are also indicated in blue.
DOI: 10.5061/dryad.41fs7/1
title: BotterillJamesetal_DataALL

description: All data required to replicate the results of Botterill-James et al. 2016.
DOI: 10.5061/dryad.4ts50/1
title: Wood properties and N2 fixation rates

description: Wood properties (density, moisture, relative N concentration and d15N) and N2 fixation rates measured for decaying Norway spruce wood collected from Lapinjärvi, Finland.
DOI: 10.5061/dryad.591gf/4
title: movie4-medaka-GaudiRSG-30dpi.

description: Aghaallaei-Gruhl et al-development-DEVELOP:2015:134098-movie-4
DOI: 10.5061/dryad.591gf/5
title: movie5-medaka-GaudiRSG-150dpi

description: Aghaallaei-Gruhl et al-development-DEVELOP:2015:134098-movie-5
DOI: 10.5061/dryad.591gf/6
title: movie6-medaka-GaudiBBW-90dpi

description: Aghaallaei-Gruhl et al-development-DEVELOP:2015:134098-movie-6
DOI: 10.5061/dryad.591gf/7
title: movie6b-Medaka-GaudiBBW-row

description: Aghaallaei-Gruhl et al-development-DEVELOP:2015:134098-movie6b
DOI: 10.5061/dryad.5j1k1/1
title: Common dolphin atypical residency - location data

description: Excel spreadsheet of sighting information including location, depth and distance to shore of resident common dolphin in the Port Phillip embayment, Victoria, Australia. Location data collected in field. Depth and distance to shore calculated in ArcGIS
DOI: 10.5061/dryad.6rj63/2
title: Fecundity data
DOI: 10.5061/dryad.6rj63/3
title: GENERAL STATEMENT, PLEASE READ THIS BEFORE USING THE DATA
DOI: 10.5061/dryad.6tq74/9
title: saturation_states
DOI: 10.5061/dryad.7tp7f/1
title: File S1 - Mass data

description: Estimated body masses for 177 genera of eutherian mammal, and sources of that data.
DOI: 10.5061/dryad.7tp7f/2
title: SI Methods

description: Additional description of methods used in Halliday and Goswami (2016), particularly with respect to model parameters.
DOI: 10.5061/dryad.7tp7f/3
title: SI Bayes File

description: File for submission to MrBayes including character matrix and MrBayes commands and parameters.
DOI: 10.5061/dryad.8m68k/1
title: Nystrand et al. 2016. Transgenerational plasticity in fruit flies

description: Excel file containing experimental data for females and males.
DOI: 10.5061/dryad.b3g67/10
title: File 2

description: DATA MATRIX OF 130 CHARACTERS (10 CRANIAL-MANDIBULAR, 120 DENTAL) APPLIED ON 14 TERMINAL TAXA (PERISSODACTYLS, HYRACOID, PROBOSCIDEANS, EMBRITHOPODS, AND PHENACOLOPHUS). THE THREE OUTGROUPS ARE A PRIORI XENICOHIPPUS, ARENAHIPPUS, AND RADINSKYA
DOI: 10.5061/dryad.b3g67/11
title: File 3

description: TABLE OF MEAN SIZE VALUES OF STUDIED TAXA
DOI: 10.5061/dryad.b3g67/12
title: File 4

description: CHARACTER DISTRIBUTION OF THE STRICT CONSENSUS TREE
DOI: 10.5061/dryad.b3g67/9
title: File 1

description: LIST OF CRANIAL AND DENTAL CHARACTERS USED IN THE CLADISTIC ANALYSIS
DOI: 10.5061/dryad.d826h/1
title: Data_file

description: Excel file with 22 microsatellites loci  y mitochondrial control region.
DOI: 10.5061/dryad.g4760/1
title: lepitotalm23.phy

description: The phylip alignment file of complete mitochondrial genome sequences from 36 sportive lemur individuals with 15 outgroup taxa with total alignment of 14755
DOI: 10.5061/dryad.g4760/2
title: lepitotalm23RAxML_bestTree

description: The best tree generated from Lepitotal23.phy by RAxML.
DOI: 10.5061/dryad.g4760/3
title: lepitotalm23Beast

description: Mitogenome BEAST xml file from this publication
DOI: 10.5061/dryad.g4760/4
title: lepitotalm23nhmpannotationtreefromBeast

description: The Bayesian tree with divergence time from lepitotalm23Beast.xml by BEAST package
DOI: 10.5061/dryad.gd74v/2
title: 2960_smx_3lf
DOI: 10.5061/dryad.h9022/1
title: nSSR and SNP genotypes

description: nSSR and SNP genotypes
DOI: 10.5061/dryad.j6r5k/1
title: NSCdata

description: This database contains seasonal non-structural carbohydrates data (NSC; including total NSC, starch and soluble sugars) for terrestrial land plants (global scope), and it is based on a compilation of data from the literature. We selected only data that fulfilled the following criteria: (1) study duration was at least four months, (2) the same individuals or populations were measured at least three times spanning the length of the study, (3) plants were mature, (4) measurements were taken on leaves, stems, or belowground organs, (5) tissue was not bark, phloem or cortex, (6) values reported were total NSC, starch/fructans or soluble sugars, and (7) species were land plants (i.e., saltwater and freshwater species were not included).
DOI: 10.5061/dryad.j6r5k/2
title: NSCdata_sources

description: This file lists the sources of all the individual datasets included in our final NSC database (”NSCdata_DRYAD.csv” file).
DOI: 10.5061/dryad.kr6hg/1
title: vegetation_data

description: Vegetation data of plots treated with the restored management practices.
DOI: 10.5061/dryad.n0513/10
title: Overlap_Buff_400m_All_Nests

description: This file contains a list of all overlapping nest buffers (buffer area = 400m^2) used to construct the S matrix for the '400 m overlap' animal model presented in the supporting information of the above paper
DOI: 10.5061/dryad.n0513/11
title: Overlap_Buff_500m_All_Nests

description: This file contains a list of all overlapping nest buffers (buffer area = 500m^2) used to construct the S matrix for the '500 m overlap' animal model presented in the supporting information of the above paper
DOI: 10.5061/dryad.n0513/12
title: Overlap_Buff_600m_All_Nests

description: This file contains a list of all overlapping nest buffers (buffer area = 600m^2) used to construct the S matrix for the '600 m overlap' animal model presented in the supporting information of the above paper
DOI: 10.5061/dryad.n0513/13
title: Overlap_Buff_700m_All_Nests

description: This file contains a list of all overlapping nest buffers (buffer area = 700m^2) used to construct the S matrix for the '700 m overlap' animal model presented in the supporting information of the above paper
DOI: 10.5061/dryad.n0513/14
title: Overlap_Buff_800m_All_Nests

description: This file contains a list of all overlapping nest buffers (buffer area = 800m^2) used to construct the S matrix for the '800 m overlap' animal model presented in the supporting information of the above paper
DOI: 10.5061/dryad.n0513/15
title: Overlap_Buff_900m_All_Nests

description: This file contains a list of all overlapping nest buffers (buffer area = 900m^2) used to construct the S matrix for the '900 m overlap' animal model presented in the supporting information of the above paper
DOI: 10.5061/dryad.n0513/16
title: Overlap_Buff_1000m_All_Nests

description: This file contains a list of all overlapping nest buffers (buffer area = 1000m^2) used to construct the S matrix for the '1000 m overlap' animal model presented in the supporting information of the above paper
DOI: 10.5061/dryad.n0513/17
title: Overlap_Buff_1500m_All_Nests

description: This file contains a list of all overlapping nest buffers (buffer area = 1500m^2) used to construct the S matrix for the '1500 m overlap' animal model presented in the supporting information of the above paper
DOI: 10.5061/dryad.n0513/18
title: Overlap_Buff_2000m_All_Nests

description: This file contains a list of all overlapping nest buffers (buffer area = 2000m^2) used to construct the S matrix for the '2000 m overlap' animal model presented in the supporting information of the above paper
DOI: 10.5061/dryad.pn25d/1
title: F1_RTPCR_and_Survival

description: RTPCR assay data for chloroplast inheritance and survival data for F1 hybrids
DOI: 10.5061/dryad.pn25d/2
title: F2_RTPCR_and_Survival

description: RTPCR assay data for chloroplast inheritance and survival data for F2 hybrids
DOI: 10.5061/dryad.rh07b/1
title: Dorsal view
DOI: 10.5061/dryad.tf0f5/1
title: Allele and Trait Reanalysis

description: This spreadsheet includes a number of individual sheets including reanalyses and rankings of the original measures provided as supplementary information provided in Protas et al. (2007).
DOI: 10.5061/dryad.v2818/1
title: Wood density, vessel characteristics and water use efficiency for 90 tropical species

description: Wood density, vessel characteristics and water use efficiency for 90 tropical species
DOI: 10.5061/dryad.15pv1/1
title: Data and Analysis

description: Raw data and analysis for Porter method studies.  Raw data and R code for Lake study.
DOI: 10.5061/dryad.1m056/1
title: Alonzo_et_al_Nature_Comm_2016_Expt1

description: This file contains the data from Experiment 1 (the “in vitro” sperm competition experiments.  These data are represented in Figures 1 and 2 and Tables 1 and 2.
DOI: 10.5061/dryad.1m056/2
title: Alonzo_et_al_Nature_Comm_2016_Expt2

description: This file contains the data from Experiment 2 (the experiment examining the effect of ovarian fluid on sperm characteristics).  These data are represented in Figure 3.
DOI: 10.5061/dryad.2kd28/10
title: Appendix_S8

description: Estimated node ages (in millions of years) and rates of climatic niche change for three trees under three different models of evolution (BM = Brownian Motion; OU = Ornstein-Uhlenbeck; Lambda = estimated lambda) for each climatic variable (MAT = mean annual temperature, Bio1; TMAX = maximum temperature of the warmest month, Bio5; TMIN = minimum temperature of the coldest month, Bio6; MAP = mean annual precipitation, Bio12), along with estimated rates of future climate change under three scenarios (minimum [min], median [med], maximum [max]), and differences between rates of niche change and future climate change.
DOI: 10.5061/dryad.2kd28/11
title: Appendix_S9

description: Summary of climatic data for the 102 focal species with one or more non-native localities. Only the focal species (those for which rates are estimated) were screened for non-native localities. The number of unique native localities (after removing non-native localities) is shown, along with raw means for climatic variables (including all localities), recalculated means (after excluding non-native localities), and the difference between the raw and recalculated means. Boldfaced species are those in which the raw and recalculated means differ by &gt;1°C for one or more temperature variables. Species with no data for recalculated means are those for which there were no native localities in the dataset of Edwards & Smith [13].
DOI: 10.5061/dryad.2kd28/2
title: Supplementary Figure S1

description: Visual summary and flowchart of the methods used in this study.
DOI: 10.5061/dryad.2kd28/3
title: Appendix_S1

description: Supplementary Methods
DOI: 10.5061/dryad.2kd28/4
title: Appendix_S2

description: Summary of climatic data for 170 species from Edwards & Smith [13] for each climatic variable (MAT = mean annual temperature, Bio1; TMAX = maximum temperature of the warmest month, Bio5; TMIN = minimum temperature of the coldest month, Bio6; MAP = mean annual precipitation, Bio12).  Climatic data for each species for each climatic variable are summarized by the minimum, median and maximum values among localities within its distribution, as well as the mean value across all localities that was used to calculate rates.  Temperature values are in degrees Celsius*10 and precipitation values are in mm/year.
DOI: 10.5061/dryad.2kd28/5
title: Appendix_S3

description: Summary of climatic data for 62 species from Tree 1 of Spriggs et al. [2] for each climatic variable (MAT = mean annual temperature, Bio1; TMAX = maximum temperature of the warmest month, Bio5; TMIN = minimum temperature of the coldest month, Bio6; MAP = mean annual precipitation, Bio12).  Climatic data for each species for each climatic variable are summarized by the minimum, median and maximum values identified within its distribution, as well as the mean value across all localities that was used to calculate rates. Temperature values are in degrees Celsius*10 and precipitation values are in mm/year.
DOI: 10.5061/dryad.2kd28/6
title: Appendix_S4

description: Summary of climatic data for 60 species from Tree 2 of Spriggs et al. [2] for each climatic variable (MAT = mean annual temperature, Bio1; TMAX = maximum temperature of the warmest month, Bio5; TMIN = minimum temperature of the coldest month, Bio6; MAP = mean annual precipitation, Bio12).  Climatic data for each species for each climatic variable are summarized by the minimum, median and maximum values identified within its distribution, as well as the mean value across all localities that was used to calculate rates. Temperature values are in degrees Celsius*10 and precipitation values are in mm/year.
DOI: 10.6084/m9.figshare.5695753.v1
title: OPEN EDUCATIONAL RESOURCES AND COPYRIGHT: ANALYSIS OF BRAZILIAN WEB SITES

description: ABSTRACT The open access triggered the increase in the number of repositories and libraries that offer open educational resources. The word “open” leads to a reflection of what are the copyrights involving this concept, and if users are informed about these rights. The objective of this research is to analyze the information provided to users about copyright and licenses, in Brazilian educational repositories. It was concluded that minimal information was not made available to Internet users in the majority of the analyzed repositories. Access to information allows for more qualified user’s choices to exercise their rights, and the failure of the subject matter information may cause offense to the author’s rights.
DOI: 10.6084/m9.figshare.5695750
title: Vigor-S, a new system for evaluating the physiological potential of maize seeds

description: ABSTRACT: The refinement of vigor tests and the possibility of utilizing computer resources for the effective evaluation of the seed physiological potential have attracted considerable interest from research and seed technologists. The aim of this study was to evaluate the physiological potential of maize seeds using the newly-created Automated Analysis of Seed Vigor System (Vigor-S) compared with other recommended seed vigor tests; two maize hybrids were used, each represented by seven seed lots. Germination and vigor (cold test, saturated salt accelerated aging, and field seedling emergence) evaluations were conducted. For the evaluation of seed vigor with the use of seedling image analysis resources, two systems were compared: the Seed Vigor Imaging System (SVIS®), developed by Ohio State University, USA and the Vigor-S, resulting from collaboration between USP/ESALQ and EMBRAPA (Embrapa Instrumentation). Using these two systems, three day old seedlings were scanned and the images were analyzed. Similar results for the vigor index, uniformity of development, and seedling length were obtained. The computerized image analysis of seedlings using Vigor-S has advantages with respect to accuracy, speed, and the possibility of automatic application to a worksheet. It is a consistent alternative for the evaluation of maize seed vigor, and produces information compatible with that obtained by the accelerated aging test and SVIS®.
DOI: 10.6084/m9.figshare.5695750.v1
title: Vigor-S, a new system for evaluating the physiological potential of maize seeds

description: ABSTRACT: The refinement of vigor tests and the possibility of utilizing computer resources for the effective evaluation of the seed physiological potential have attracted considerable interest from research and seed technologists. The aim of this study was to evaluate the physiological potential of maize seeds using the newly-created Automated Analysis of Seed Vigor System (Vigor-S) compared with other recommended seed vigor tests; two maize hybrids were used, each represented by seven seed lots. Germination and vigor (cold test, saturated salt accelerated aging, and field seedling emergence) evaluations were conducted. For the evaluation of seed vigor with the use of seedling image analysis resources, two systems were compared: the Seed Vigor Imaging System (SVIS®), developed by Ohio State University, USA and the Vigor-S, resulting from collaboration between USP/ESALQ and EMBRAPA (Embrapa Instrumentation). Using these two systems, three day old seedlings were scanned and the images were analyzed. Similar results for the vigor index, uniformity of development, and seedling length were obtained. The computerized image analysis of seedlings using Vigor-S has advantages with respect to accuracy, speed, and the possibility of automatic application to a worksheet. It is a consistent alternative for the evaluation of maize seed vigor, and produces information compatible with that obtained by the accelerated aging test and SVIS®.