cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8302989
title: PPAST-GR Dataset: Greek Parliament Proceedings post WWII Analysis and Recognition

description: The first post-WWII years in Greece were devastating. After a brutal Nazi occupation, the Greek Civil War (1946–1949) erupted. It wrecked the economy and the country’s infrastructure and altered politics and the social fabric for decades to come. For the tense and unstable first years of the conflict (1946–1947), a study of the issues discussed in the Greek parliament could facilitate our understanding of the society at the time. An obstacle is that parliament proceedings are publicly available in a machine-readable form from 1989; before that only scanned images of the original records exist. We show that text recognition followed by natural language processing can unlock this corpus for historical research. Using Transkribus, we trained a text recogniser (1.5% CER) that we applied to 3,156 images from 1946 and 1947. As low-quality recognition is inevitable, we trained a language model on the transcribed text and applied it to recognised text, discarding records with high average cross-entropy. Using information extraction techniques, we sampled speeches that were applauded and we introduce the first quantification of issues that were thus received. All our resources will be made public. Our model is publicly available through the Transkribus platform (http://www.transkribus.org/) under the name "Greek Parliamentary Proceedings 1946".
DOI: 10.17637/rh.24100080
title: Materia medica lists with tags for philological purposes

description: Spreadsheet containing tagged lists of pharmaceutical ingredients of the vernacular version of Ioannes archiatrus' Therapeutics. This spreadsheet is optimised for philological purposes.
DOI: 10.17637/rh.24100080.v1
title: Materia medica lists with tags for philological purposes

description: Spreadsheet containing tagged lists of pharmaceutical ingredients of the vernacular version of Ioannes archiatrus' Therapeutics. This spreadsheet is optimised for philological purposes.
DOI: 10.5281/zenodo.8329025
title: Data from: Prospection of potential actions during visual working memory starts early, is flexible, and predicts behavior.

description: Raw data (EEG and behavior) reported in the manuscript "Prospection of potential actions in visual working memory starts early, is flexible, and predicts behavior" by Rose Nasrawi, Sage E.P. Boettcher, and Freek van Ede
DOI: 10.5281/zenodo.8329024
title: Data from: Prospection of potential actions during visual working memory starts early, is flexible, and predicts behavior.

description: Raw data (EEG and behavior) reported in the manuscript "Prospection of potential actions in visual working memory starts early, is flexible, and predicts behavior" by Rose Nasrawi, Sage E.P. Boettcher, and Freek van Ede
DOI: 10.15151/esrf-dc-1329817123
title: ATP-Bound adenylate cyclase OaPAC recorded at 100 K

description: The understanding of signal transduction mechanisms in photoreceptor proteins is essential for elucidating how living organisms respond to light as environmental stimuli. In this study, we investigated the ATP binding, photoactivation and signal transduction process in the photoactivatable adenylate cyclase from Oscillatoria acuminata (OaPAC) upon blue light excitation. Structural models with ATP bound in the active site of native OaPAC at cryogenic as well as room-temperature are presented. ATP is found in one conformation at cryogenic- and in two conformations at ambient-temperature, and is bound in a non-productive conformation. However, FTIR spectroscopic experiments confirm that the non-productive conformation is the native binding mode in dark state OaPAC and that transition to a productive conformation for ATP turnover only occurs after light activation. A combination of time-resolved crystallography experiments at synchrotron and X-ray Free Electron Lasers sheds light on the initial events around the Flavin-Adenine-Dinucleotide (FAD) chromophore in the light-sensitive BLUF domain of OaPAC. Initial changes involve the highly conserved amino acids Tyr6, Gln48 and Met92. Crucially, the Gln48 side chain performs a 180° rotation during activation, leading to the stabilization of the FAD chromophore. Cryo-trapping experiments allowed us to investigate a late light-activated state of the reaction and revealed significant conformational changes in the BLUF domain around the FAD chromophore. In particular, a Trpin/Metout transition upon illumination is observed for the first time in the BLUF domain and its role in signal transmission via α-helix 3 and 4 in the linker region between sensor and effector domain is discussed.
DOI: 10.17861/fba95425-a037-44dd-8e7e-f200927ea79d
title: Nonlinear Loss Engineering in Near-Zero-Index Bulk Materials

description: All data pertaining associated peer-reviewed article
DOI: 10.15151/esrf-dc-1329827085
title: ATP-Free structure of adenylate cyclase OaPAC at 100 K

description: The understanding of signal transduction mechanisms in photoreceptor proteins is essential for elucidating how living organisms respond to light as environmental stimuli. In this study, we investigated the ATP binding, photoactivation and signal transduction process in the photoactivatable adenylate cyclase from Oscillatoria acuminata (OaPAC) upon blue light excitation. Structural models with ATP bound in the active site of native OaPAC at cryogenic as well as room-temperature are presented. ATP is found in one conformation at cryogenic- and in two conformations at ambient-temperature, and is bound in a non-productive conformation. However, FTIR spectroscopic experiments confirm that the non-productive conformation is the native binding mode in dark state OaPAC and that transition to a productive conformation for ATP turnover only occurs after light activation. A combination of time-resolved crystallography experiments at synchrotron and X-ray Free Electron Lasers sheds light on the initial events around the Flavin-Adenine-Dinucleotide (FAD) chromophore in the light-sensitive BLUF domain of OaPAC. Initial changes involve the highly conserved amino acids Tyr6, Gln48 and Met92. Crucially, the Gln48 side chain performs a 180° rotation during activation, leading to the stabilization of the FAD chromophore. Cryo-trapping experiments allowed us to investigate a late light-activated state of the reaction and revealed significant conformational changes in the BLUF domain around the FAD chromophore. In particular, a Trpin/Metout transition upon illumination is observed for the first time in the BLUF domain and its role in signal transmission via α-helix 3 and 4 in the linker region between sensor and effector domain is discussed.
DOI: 10.6084/m9.figshare.23945931
title: Contemporary Historical Sources of Viking Activity, 777-920 (Version 1)

description: This dataset compiles the collected Western European contemporary chronicles referencing Viking activity, 777-920.<b>Source Bibliography</b><b>Frankish Annals</b>Bivans, S. (2017). <i>Viking War and the Fall of the Carolingians: A Critical English Translation of the Annals of St-Vaast</i>, Shireness Publishing.Nelson, J. L. (1991). <i>The Annals of St-Bertin</i>. Manchester and New York, Manchester Univerity Press.Reuter, T. (1992). <i>The Annals of Fulda</i>. Manchester, Manchester University Press.Scholz, B. W. and B. Rogers (2006). <i>Carolingian Chronicles: Royal Frankish Annals and Nithard's Histories.</i> University of Michigan Press.<b>Anglo-Saxon Chronicle</b>Swanton, M. (1971). <i>The Anglo-Saxon Chronicle</i>. Exeter, University of Exeter Press.<b>Irish Annals</b>Cork, U. C. (1997-2021). "CELT: Corpus of Electronic Texts." 2018-2022.<b>Spanish Chronicles</b>Baxter Wolf, K. (1999). <i>Conquerors and Chroniclers of Early Medieval Spain. </i>Liverpool, Liverpool University Press.
DOI: 10.6084/m9.figshare.23945931.v1
title: Contemporary Historical Sources of Viking Activity, 777-920 (Version 1)

description: This dataset compiles the collected Western European contemporary chronicles referencing Viking activity, 777-920.<b>Source Bibliography</b><b>Frankish Annals</b>Bivans, S. (2017). <i>Viking War and the Fall of the Carolingians: A Critical English Translation of the Annals of St-Vaast</i>, Shireness Publishing.Nelson, J. L. (1991). <i>The Annals of St-Bertin</i>. Manchester and New York, Manchester Univerity Press.Reuter, T. (1992). <i>The Annals of Fulda</i>. Manchester, Manchester University Press.Scholz, B. W. and B. Rogers (2006). <i>Carolingian Chronicles: Royal Frankish Annals and Nithard's Histories.</i> University of Michigan Press.<b>Anglo-Saxon Chronicle</b>Swanton, M. (1971). <i>The Anglo-Saxon Chronicle</i>. Exeter, University of Exeter Press.<b>Irish Annals</b>Cork, U. C. (1997-2021). "CELT: Corpus of Electronic Texts." 2018-2022.<b>Spanish Chronicles</b>Baxter Wolf, K. (1999). <i>Conquerors and Chroniclers of Early Medieval Spain. </i>Liverpool, Liverpool University Press.
DOI: 10.34740/kaggle/dsv/6451091
title: Egypt Gold Prices | Daily Updated
DOI: 10.5281/zenodo.8333940
title: Benchmark-for-MAPD-in-RMFS

description: The 2560 instances are selected to constitute the benchmark considering hardness, exhaustiveness, scalability, and amenity of statistical analysis. The benchmark set, lower bound, and upper bound are published in there.
DOI: 10.5281/zenodo.8333939
title: Benchmark-for-MAPD-in-RMFS

description: The 2560 instances are selected to constitute the benchmark considering hardness, exhaustiveness, scalability, and amenity of statistical analysis. The benchmark set, lower bound, and upper bound are published in there.
DOI: 10.34943/afd7b88e-336e-46cf-8100-e32ece5bc090
title: Main Endeavour Field Hydrophone Deployed 2023-09-08

description: The Ocean Sonics icListen HF Hydrophone 6328 was deployed on 2023-09-08 at Main Endeavour Field. Main Endeavour Field is a vent field located at Endeavour Ridge, where hydrothermal vent systems are observed. This device is a Hydrophone. Hydrophones are devices containing transducers that convert underwater sound waves into electrical signals. They are acoustic instruments that can process data while they are being collected to produce calibrated waveform data. Hydrophones are typically used to study vocalizations of marine mammals, ship traffic and ambient noise. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.5281/zenodo.8333810
title: NEMO: A Database for Emotion Analysis Using Functional Near-infrared Spectroscopy

description: <code>The data from publication "NEMO: A Database for Emotion Analysis Using Functional Near-infrared Spectroscopy".<br> <br> nemo-bids.zip</code> contains the raw optical density (OD) recordings and corresponding metadata for each participant. <code>&lt;task_id&gt;_csv.zip</code> provides an easy way to access the processed epochs data without needing any code from the code repository or other BIDS tools. <code>NEMO_additional_metadata.tsv</code> contains additional details, such as subject's age, monitor refresh rate, gender, handedness, recording date and time, specifics about different trial types, and more. Detailed descriptions of each column can be found in the <code>NEMO_additional_metadata_column_descriptions.tsv</code> file. For how to use the data, refer to https://github.com/Cognitive-Computing-Group/NEMO
DOI: 10.5281/zenodo.8333971
title: NEMO: A Database for Emotion Analysis Using Functional Near-infrared Spectroscopy

description: <code>The data from publication "NEMO: A Database for Emotion Analysis Using Functional Near-infrared Spectroscopy".<br> <br> nemo-bids.zip</code> contains the raw optical density (OD) recordings and corresponding metadata for each participant. <code>&lt;task_id&gt;_csv.zip</code> provides an easy way to access the processed epochs data without needing any code from the code repository or other BIDS tools. <code>NEMO_additional_metadata.tsv</code> contains additional details, such as subject's age, monitor refresh rate, gender, handedness, recording date and time, specifics about different trial types, and more. Detailed descriptions of each column can be found in the <code>NEMO_additional_metadata_column_descriptions.tsv</code> file. For how to use the data, refer to https://github.com/Cognitive-Computing-Group/NEMO
DOI: 10.6084/m9.figshare.24117970
title: Longitudinal modeling to predict vital capacity in amyotrophic lateral sclerosis

description: <i>Objectives</i>: Death in amyotrophic lateral sclerosis (ALS) patients is related to respiratory failure, which is assessed in clinical settings by measuring vital capacity. We developed ALS-VC, a modeling tool for longitudinal prediction of vital capacity in ALS patients. <i>Methods</i>: A gradient boosting machine (GBM) model was trained using the PRO-ACT (Pooled Resource Open-access ALS Clinical Trials) database of over 10,000 ALS patient records. We hypothesized that a reliable vital capacity predictive model could be developed using PRO-ACT. <i>Results</i>: The model was used to compare FVC predictions with a 30-day run-in period to predictions made from just baseline. The internal root mean square deviations (RMSD) of the run-in and baseline models were 0.534 and 0.539, respectively, across the 7L FVC range captured in PRO-ACT. The RMSDs of the run-in and baseline models using an unrelated, contemporary external validation dataset (0.553 and 0.538, respectively) were comparable to the internal validation. The model was shown to have similar accuracy for predicting SVC (RMSD = 0.562). The most important features for both run-in and baseline models were “Baseline forced vital capacity” and “Days since baseline.” <i>Conclusions</i>: We developed ALS-VC, a GBM model trained with the PRO-ACT ALS dataset that provides vital capacity predictions generalizable to external datasets. The ALS-VC model could be helpful in advising and counseling patients, and, in clinical trials, it could be used to generate virtual control arms against which observed outcomes could be compared, or used to stratify patients into slowly, average, and rapidly progressing subgroups.
DOI: 10.6084/m9.figshare.24117970.v1
title: Longitudinal modeling to predict vital capacity in amyotrophic lateral sclerosis

description: <i>Objectives</i>: Death in amyotrophic lateral sclerosis (ALS) patients is related to respiratory failure, which is assessed in clinical settings by measuring vital capacity. We developed ALS-VC, a modeling tool for longitudinal prediction of vital capacity in ALS patients. <i>Methods</i>: A gradient boosting machine (GBM) model was trained using the PRO-ACT (Pooled Resource Open-access ALS Clinical Trials) database of over 10,000 ALS patient records. We hypothesized that a reliable vital capacity predictive model could be developed using PRO-ACT. <i>Results</i>: The model was used to compare FVC predictions with a 30-day run-in period to predictions made from just baseline. The internal root mean square deviations (RMSD) of the run-in and baseline models were 0.534 and 0.539, respectively, across the 7L FVC range captured in PRO-ACT. The RMSDs of the run-in and baseline models using an unrelated, contemporary external validation dataset (0.553 and 0.538, respectively) were comparable to the internal validation. The model was shown to have similar accuracy for predicting SVC (RMSD = 0.562). The most important features for both run-in and baseline models were “Baseline forced vital capacity” and “Days since baseline.” <i>Conclusions</i>: We developed ALS-VC, a GBM model trained with the PRO-ACT ALS dataset that provides vital capacity predictions generalizable to external datasets. The ALS-VC model could be helpful in advising and counseling patients, and, in clinical trials, it could be used to generate virtual control arms against which observed outcomes could be compared, or used to stratify patients into slowly, average, and rapidly progressing subgroups.
DOI: 10.6084/m9.figshare.5657221.v2
title: A randomized controlled trial of resistance and endurance exercise in amyotrophic lateral sclerosis

description: <i>Objective:</i> Evaluate the safety and tolerability of resistance and endurance exercise in ALS participants as measured by their ability to complete this six-month study. <i>Methods:</i> Participants were randomized to Resistance, Endurance, or Stretching/Range of Motion (SROM the exercise regimen prescribed for most ALS patients) exercises. All exercises were performed at home with an individualized regimen designed by a physical therapist trained in ALS management. Primary outcome measures were tolerability of the exercises at 24 weeks defined by 50% of participants completing at least 50% of the prescribed exercise regimen. Secondary outcome measures included the ALSFRS-R, pulmonary FVC, and other measures of ALS function. <i>Results:</i> At 12 and 24 weeks, all three exercise regimens were tolerated according to our pre-specified criteria. Compliance to the prescribed exercise regimen was the highest in the resistance and SROM arms of the study. All three forms of exercise were considered safe as there were no differences in the rates of disease progression among groups. There were no differences in the secondary outcome measures and feasibility for evaluating these measures was successful. In a post-hoc analysis, there was a trend towards fewer falls in the Resistance and Endurance groups. <i>Conclusions:</i> This study demonstrates that SROM, resistance, and endurance exercise are all safe to be performed with the specified regimen without any worsening of outcomes as related to ALS function. All three forms of exercise were tolerated with resistance and SROM exercises showing the highest compliance over the 24 week-period.
DOI: 10.6084/m9.figshare.5657221.v1
title: A randomized controlled trial of resistance and endurance exercise in amyotrophic lateral sclerosis

description: <i>Objective:</i> Evaluate the safety and tolerability of resistance and endurance exercise in ALS participants as measured by their ability to complete this six-month study. <i>Methods:</i> Participants were randomized to Resistance, Endurance, or Stretching/Range of Motion (SROM the exercise regimen prescribed for most ALS patients) exercises. All exercises were performed at home with an individualized regimen designed by a physical therapist trained in ALS management. Primary outcome measures were tolerability of the exercises at 24 weeks defined by 50% of participants completing at least 50% of the prescribed exercise regimen. Secondary outcome measures included the ALSFRS-R, pulmonary FVC, and other measures of ALS function. <i>Results:</i> At 12 and 24 weeks, all three exercise regimens were tolerated according to our pre-specified criteria. Compliance to the prescribed exercise regimen was the highest in the resistance and SROM arms of the study. All three forms of exercise were considered safe as there were no differences in the rates of disease progression among groups. There were no differences in the secondary outcome measures and feasibility for evaluating these measures was successful. In a post-hoc analysis, there was a trend towards fewer falls in the Resistance and Endurance groups. <i>Conclusions:</i> This study demonstrates that SROM, resistance, and endurance exercise are all safe to be performed with the specified regimen without any worsening of outcomes as related to ALS function. All three forms of exercise were tolerated with resistance and SROM exercises showing the highest compliance over the 24 week-period.
DOI: 10.5281/zenodo.8333978
title: NEMO: A Database for Emotion Analysis Using Functional Near-infrared Spectroscopy

description: The data from publication "NEMO: A Database for Emotion Analysis Using Functional Near-infrared Spectroscopy".<br> <br> <code>nemo-bids.zip</code> contains the raw optical density (OD) recordings and corresponding metadata for each participant. <code>&lt;task_id&gt;_csv.zip</code> provides an easy way to access the processed epochs data without needing any code from the code repository or other BIDS tools. <code>NEMO_additional_metadata.tsv</code> contains additional details, such as subject's age, monitor refresh rate, gender, handedness, recording date and time, specifics about different trial types, and more. Detailed descriptions of each column can be found in the <code>NEMO_additional_metadata_column_descriptions.tsv</code> file. For how to use the data, refer to https://github.com/Cognitive-Computing-Group/NEMO
DOI: 10.5281/zenodo.8333809
title: NEMO: A Database for Emotion Analysis Using Functional Near-infrared Spectroscopy

description: The data from publication "NEMO: A Database for Emotion Analysis Using Functional Near-infrared Spectroscopy".<br> <br> <code>nemo-bids.zip</code> contains the raw optical density (OD) recordings and corresponding metadata for each participant. <code>&lt;task_id&gt;_csv.zip</code> provides an easy way to access the processed epochs data without needing any code from the code repository or other BIDS tools. <code>NEMO_additional_metadata.tsv</code> contains additional details, such as subject's age, monitor refresh rate, gender, handedness, recording date and time, specifics about different trial types, and more. Detailed descriptions of each column can be found in the <code>NEMO_additional_metadata_column_descriptions.tsv</code> file. For how to use the data, refer to https://github.com/Cognitive-Computing-Group/NEMO
DOI: 10.6084/m9.figshare.24117837
title: The Effect of Internet Diffusion on Income Inequality: Cross-Regional Analysis in Indonesia

description: This research tests three hypotheses: 1) Internet diffusion has a significant effect on within-province income inequality in Indonesia; 2) Internet diffusion has a significant nonlinear effect on within-province income inequality in Indonesia; and 3) Internet diffusion has a significant effect on within-province income inequality in Indonesia differing by per capita income and education level. An important finding in this research is that Internet diffusion has a significant effect on income inequality as indicated by the positive influence of the Internet on income inequality between regions. In addition, the influence of the internet tends to be nonlinear and interacts differently with the heterogeneity of each province. The attached data is in .dta and .do format which can be processed with STATA by running the file. All data on each variable was downloaded from the BPS website which was processed into STATA. Several variables such as the Williamson index, real GDP per capita, and proportion of secondary and tertiary sectors were processed by researchers based on basic data from the website. The research method uses IV-2SLS with the Driscoll-Kraay standard error correction model. IneqPaper14.dta is a data set and Paper_2013-2019.do contains commands for processing data set files. IneqPaper15_2013-2019.dta is the final processed data.
DOI: 10.57770/zlbgok
title: Herbal formula SS-1 increases tear secretion for Sjögren’s syndrome.

description: Sjögren’s syndrome (SS) is an autoimmune inflammatory disease that primarily affects the exocrine glands, leading to glandular dysfunction. The hallmark symptoms of SS are dry eyes and mouth, compromising the quality of life of patients and decreasing their capacity to perform their daily activities
DOI: 10.5281/zenodo.5362919
title: night-time PM2.5 concentrations

description: Estimation of night-time PM2.5 concentrations using machine learning based on the VIIRS Day-Night Band data
DOI: 10.5281/zenodo.5362918
title: night-time PM2.5 concentrations

description: Estimation of night-time PM2.5 concentrations using machine learning based on the VIIRS Day-Night Band data