cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28485737.v1
title: Array files from 697 and EOL-1 cell lines

description: We performed whole-genome sequencing (WGS) with nanopore sequencing (NS) for copy number variant (CNV) calling in the acute myeloid (eosinophilic) leukemia (EOL-1) and B-cell precursor acute lymphoblastic leukemia (697) cell lines. Genomic DNA libraries were prepared using a rapid library preparation protocol and sequenced on the MinION device (Oxford Nanopore Technologies). NS data were processed using Guppy for basecalling, lra for read alignment, and CuteSV and Sniffles2 for variant calling. Mean coverage depths were of 13.1X for EOL-1 and 11.4X for 697. Simultaneously, chromosomal microarray analysis and CNV validation were performed on the same samples using array technology. We demonstrate that WGS with nanopore technology enables the identification of the majority of structural copy number variations detected by the gold-standard array method.The raw signal intensity data (.cel files) from ThermoFisher CytoScan HD® array (ThermoFisher Scientific, California, USA) were converted to .cychp files. The .cychp files are compatible with Genotyping Console v4.0 and Chromosome Analysis Suite 4.0.0.385 software.
DOI: 10.3535/l6z-yqb-72l
title: Pseudoasaphus globifrons Eichwald

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rnx-ke6-k5p
title: †Archinacella Ulrich & Scofield, 1897

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/05n-588-vcb
title: Illaenus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3rr-zja-as3
title: Illaenus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19196318.v1
title: Organelle segmentations for Cytotoxic T lymphocyte attacking a cancer cell (jrc_ctl-id8-2)

description: Cytotoxic T lymphocytes (CTLs) kill virus-infected and tumorigenic cells through the polarized release of perforin and granzymes, which are housed in modified lysosomes called lytic granules. Perforin is a pore-forming toxin that creates an ephemeral portal in the plasma membrane of the target through which granzymes enter the cytosol and initiate apoptosis. This conjugate was captured moments after perforin secretion toward the target. Sample: OT-I mouse cytotoxic T lymphocyte attacking an ID8 ovarian cancer cell; fixed and imaged moments after the release of perforin/granzyme from lytic granules. The ID8 murine ovarian cancer cell is stably expressing mEmerald-Chmp4b and TOMM20-SNAP. Protocol: High pressure freezing, freeze-substitution resin embedding with 2% OsO4 0.1% UA 3% H2O in acetone; resin embedding in Eponate 12.Contributions: Sample provided by Alex Ritter (Genentech), prepared for imaging by Gleb Shtengel (HHMI/Janelia), with imaging and post-processing by C. Shan Xu (HHMI/Janelia). Segmentations by Ariadne.ai.Dataset ID: jrc_ctl-id8-2Final voxel size (nm): 8 x 8 x 8 (X, Y, Z)Dimensions (µm): 50 x 9 x 62.9 (X, Y, Z)Acquisition date: 2019-10-18Dataset URL: Visualization Website: https://openorganelle.janelia.org/datasets/jrc_ctl-id8-2<br>Publication: Ritter et al., ESCRT-mediated membrane repair at the immunological synapse protects tumor cells against T cell attack, Science (2022).<br>Segmented Organelles: Centrosome, Endoplasmic Reticulum, Golgi, Lysosome, Mitochondria, Nucleus, Whole-cell<br>
DOI: 10.6084/m9.figshare.7796621.v1
title: Data for cardiac output during hypothermia in asphyxiated newborns

description: Electrical velocimetry monitoring during the first period of therapeutic hypotermia after asphyxia in the newborn
DOI: 10.6084/m9.figshare.c.3617246_d2.v1
title: Additional file 3: Table S3. of Updated Rice Kinase Database RKD 2.0: enabling transcriptome and functional analysis of rice kinase genes

description: Rice kinases with biotic stress responses. (XLSX 28 kb)
DOI: 10.3535/5tv-chy-pld
title: †Chasmops odini Eichwald, 1860

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/geb-avy-a4s
title: Pseudoasaphus globifrons Eichwald

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7ak-4fd-shy
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vs4-x1a-wa8
title: Pseudoasaphus globifrons Eichwald

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13475673.v1
title: Fatigue Results of Fibre Reinforced Composites.xlsx

description: Fatigue Test Results
DOI: 10.17632/gy2vjgfxpt
title: Data for: Early Agriculture in Sri Lanka: New Archaeobotanical Analyses and Radiocarbon Dates from the Early Historic Sites of Kirinda and Kantharodai

description: Detailed Stratigraphic information for Trenches 2 and 3 from the site of Kirinda
DOI: 10.3535/ev7-s2b-xme
title: †Nicholsonella Ulrich, 1890

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.6154298.v1
title: Mortality GWAS permutations

description: The most significant association recorded across the genome for 1000 GWAS performed where phenotypes were randomised across genotypes.<br>
DOI: 10.6084/m9.figshare.6857054.v1
title: Corticolous lichen community in an urbanization gradient in the Rio dos Sinos Hydrographic Basin, southern Brazil

description: Abstract Lichens are known worldwide as indicators of environmental quality because they are sensitive to environmental changes, specially the ones with anthropogenic origin. In this study, we analyzed species composition, richness and coverage of corticolous lichen communities in nine municipalities with diferente urbanization levels, and evaluated their similarities considering lichen species composition. The studied sites were distributed in rural, rural/urban and urban/industrial matrices. Ten phorophytes were sampled in each area using the rubber band method. A total of 215 lichen species were identified, of which nine species are new records: four are being cited for Brazil for the first time, and five for Rio Grande do Sul. As urbanization increased, a simplification of the lichen community structure was observed, as well as a decrease in species richness and changes on species composition. Besides, in the urban/industrial matrix, few species had high coverage percentage and together added great importance to the community. We found higher homogeneity on species composition in closer areas and in the ones that were inserted in the urban/industrial matrix. This study showed that urban tree vegetation is an important factor for lichen species establishment along an urbanization gradient.
DOI: 10.3535/68n-fex-h6v
title: †Archinacella Ulrich & Scofield, 1897

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hfr-rns-sme
title: †Nicholsonella Ulrich, 1890

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25486414.v4
title: GeoTool-GPT

description: None
DOI: 10.17632/b72w4tb34n
title: GLB NavIC timing Experiment

description: RINEX, TIC, PPP and BIPM datasets for NavIC timing experiment
DOI: 10.3535/30r-wyx-6j1
title: †Subulites Emmons, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6y7-dlx-tvb
title: †Diplotrypa petropolitana Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25672155.v1
title: Elsafty_RBCs_for_Segmentation_and_Detection_Slide_8

description: Each one of (Elsafty_RBCs_for_Segmentation_and_Detection_Slide_1-25) consists of three primary folders: "Cropped images,” "Masks,” and "Segmented images” corresponding to each slide/patient. The naming scheme for the cropped image, mask, and segmented image of every cell adheres to a consistent format, starting with the slide/patient number, followed by the unique patch/field number, and concluding with the (XYWH) coordination on the patch. All these images are conveniently stored in the lossless ".PNG" format.
DOI: 10.6084/m9.figshare.c.3830050_d5.v1
title: MOESM5 of Evolutionary loss of melanogenesis in the tunicate Molgula occulta

description: Additional file 5. Database of entire oligo set employed for cloning DNA used in our work.
DOI: 10.17632/9y5gyspkdc
title: Uma revisão sobre a manufatura aditiva de moldes de areia para fundição

description: Anais do II Simpósio Gaúcho de Engenharia Aeroespacial e Mecânica, UFSM
Santa Maria, RS, 24 a 26 de outubro de 2023
DOI: 10.3535/d6d-ghb-252
title: Illaenus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wm8-rf3-m77
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28525619.v1
title: Digital Elevation Model Super-Resolution Incorporating Optical Image2Gradient Information: A Case Study of the Catalonia Region in Spain

description: This dataset provides a paired low- and high-resolution DEM dataset designed for super-resolution reconstruction tasks in digital elevation modeling. Unlike traditional SR datasets that rely on simple interpolation-based downscaling, our dataset is constructed from real-world DEM sources to ensure realistic low-to-high resolution mappings.The high-resolution DEM data is sourced from the Institut Cartogràfic i Geològic de Catalunya (ICGC) with a spatial resolution of 2 meters, covering the Catalonia region in Spain. The low-resolution counterpart is derived from ALOS PALSAR DEM at 12.5 meters resolution, which offers extensive land coverage but lower spatial detail. Additionally, paired RGB optical remote sensing images from ICGC's aerial orthophotos (0.5m resolution) are included to facilitate multi-modal learning approaches.This dataset contains approximately 7,000 training pairs and around 600 test pairs, providing a robust benchmark for DEM super-resolution, deep learning-based terrain modeling, and geospatial data fusion research.
DOI: 10.3535/d5h-ht5-84x
title: †Asaphus (Neoasaphus) ornatus (Pompecki, 1890)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/l1e-rpw-rk7
title: †Asaphus (Neoasaphus) ornatus (Pompecki, 1890)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fvg-aev-lbn
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/d7y-nna-ax9
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pmn-qm0-vsk
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11423013.v1
title: Data for Relationships between livestock damages and large carnivore densities in Sweden

description: Data for Dalerum F, Selby LOK and Pirk CWW (2019) Relationships between livestock damages and large carnivore densities in Sweden. Front. Ecol. Evol. 7:507. doi: 10.3389/fevo.2019.00507<br>
DOI: 10.3535/7sk-283-xm2
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/h6z-16w-q3s
title: Platycladus Spach

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/9myftpgfhn
title: Shaking table test and numerical analysis of shallow foundation structures in seasonal frozen soil regions

description: The data was collected using some sensors, such as acceleroeters, thermocouples, pore water pressure transducers and frost depth measuring instruments. Dataset describing the response of frozen soil-structure system under seismic action. The dataset includes the characteristic of frozen soil obtained from uniaxial compression tests, acceleration time histories of ground surface and superstructure, acceleration response spectra, Fourier spectral ratios of acceleration response, and time histories of excess pore water presure ratio.
DOI: 10.3535/fy6-bwr-tzd
title: †Orthis Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/r92-vxv-y1q
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/vs5d9hv2dd
title: Nutritional Dataset for New Zealand Foods

description: This dataset was developed to understand the nutrient content of the commonly consumed foods in New Zealand. - The linkages between two prominent New Zealand studies (or databases) were evaluated, in order to determine the matching between the foods in those studies. - The first study was the 2008/09 New Zealand Adult Nutrition Survey (NZANS) for the total New Zealand population, which presents the commonly consumed foods (a total of 346) in New Zealand. - The second study was the New Zealand FOODfiles™ 2018 Version 01, which is a database that provides nutrition information (both essential nutrients and essential amino acids) for 2,767 foods. - Some of the foods in the 2008/09 NZANS are dishes (or menus); the nutrient content of each of those dishes was constructed based on the work by Drew et al. (2020). References 1. Drew J, Cleghorn C, Macmillan A, Mizdrak A. 2020. Healthy and Climate-Friendly Eating Patterns in the New Zealand Context. Environ Health Perspect. 128(1): 017007. 2. Plant and Food Research, Ministry of Health. 2019. New Zealand Food Composition Database. The New Zealand Institute for Plant and Food Research Limited. [accessed 12 Feb 2020]. https://www.foodcomposition.co.nz/ 3. University of Otago, Ministry of Health. 2011. A Focus on Nutrition: Key Findings of the 2008/09 New Zealand Adult Nutrition Survey. Wellington, New Zealand: Ministry of Health. Last update: 12 September 2020
DOI: 10.3535/6qx-ktg-gw4
title: †Endoceras J. Hall, 1847

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ev9-4ae-qft
title: †Nicholsonella Ulrich, 1890

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14212253.v1
title: MSCAAS v1.anno.gff

description: The annonation file of Meishan pig genome for the manuscription "The Meishan pig genome reveal structural variation mediated gene expression and phenotypic divergence underlying Asian pig domestication" <br>
DOI: 10.6084/m9.figshare.15241815.v1
title: OceanContinentBoundary_Random_CDFs

description: Cumulative Distribution Functions (CDF) of the distance from the ocean-continent boundary, for 100 sets of randomly located points, as plotted in Figure 4a. Column 1: Fraction of scatterers. Columns 2-101: Distance from feature for each random distribution (km)
DOI: 10.3535/0jv-t3m-s04
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tz1-e8e-476
title: †Orthis Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.9810500.v1
title: Thermodynamic analysis in silico of missense variants in MEN1

description: Dataset for thermodynamic analysis in silico of 338 previously-reported missense variants in MEN1
DOI: 10.3535/73m-dxj-4f7
title: †Orthis Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hwk-0xq-3vl
title: Mollusca

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12083331.v1
title: Computational modeling of Choice-Induced Preference Change: A Reinforcement-Learning-based approach

description: The original data of the preference judgment tasks used to verify the choice-based learning model in internally guided decision-making.
DOI: 10.6084/m9.figshare.3566301.v1
title: Appendix D. Individual MODIS-interval quality–quantity regression equations.

description: Individual MODIS-interval quality–quantity regression equations.
DOI: 10.3535/dzc-ayd-y1v
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rfj-8yg-qcy
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.23664825.v1
title: Instrumentos para estratos de la investigación

description: Instrumentos utilizados en la investigación.
DOI: 10.17632/k68dgb8y8b
title: GRADSPH: A parallel smoothed particle hydrodynamics code for self-gravitating astrophysical fluid dynamics

description: Abstract We describe the algorithms implemented in the first version of GRADSPH, a parallel, tree-based, smoothed particle hydrodynamics code for simulating self-gravitating astrophysical systems written in FORTRAN 90. The paper presents details on the implementation of the Smoothed Particle Hydro (SPH) description, where a gridless approach is used to model compressible gas dynamics. This is done in the conventional SPH way by means of ‘particles’ which sample fluid properties, exploiting interpolati... Title of program: GRADSPH 1.0 Catalogue Id: AECX_v1_0 Nature of problem evolution of a self-gravitating fluid. Versions of this program held in the CPC repository in Mendeley Data AECX_v1_0; GRADSPH 1.0; 10.1016/j.cpc.2008.12.041 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.3535/bty-00h-kza
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13103225.v1
title: additional_figure_data_

description: Spearman Correlation
DOI: 10.6084/m9.figshare.19348058.v6
title: Pseudomized Twitter data- Origin and Destination Attachment indexes and Profile information

description: For more details, please refer to the following work: <br> <strong>Title:</strong> Origin and destination attachment: study of cultural integration on Twitter <br> Authors: Jisu Kim, Alina Sîrbu, Giulio Ressetti, Fosca Giannotti, and Hillel Rapoport <br> https://doi.org/10.1140/epjds/s13688-022-00363-5 <br> To cite: Kim, J., Sîrbu, A., Giannotti, F. <em>et al.</em> Origin and destination attachment: study of cultural integration on Twitter. <em>EPJ Data Sci.</em> <strong>11</strong>, 55 (2022). https://doi.org/10.1140/epjds/s13688-022-00363-5 <br> <br> <br> <br>
DOI: 10.17632/c5txsdw864
title: Bacterial DEG biomarker abundance in water column, recent core top marine sediments, and IODP Site U1340

description: Bacterial DEG biomarker abundance in water column, recent core top marine sediments, and IODP Site U1340.
DOI: 10.3535/43p-hzz-mw7
title: Illaenus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6ve-d1p-m70
title: †Holopea J. Hall, 1847

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.4225/49/576c95f254b67
title: Sample output of the mineral Dust Entrainment And Deposition (DEAD) model

description: Sample output of the mineral Dust Entrainment And Deposition (DEAD) model.<br>- Dimensions: 94 x 192 grid-points in the horizontal covering the globe at a roughly 1.9 x 1.875 degree resolution on a regular latitude-longitude grid.<br>- 57 2D variables and 15 3D variables<br><br>
DOI: 10.6084/m9.figshare.19928330.v1
title: Developing elite popcorn inbred lines using pedigree-based BLUP

description: Data files and outputs
DOI: 10.6084/m9.figshare.25533367.v17
title: coastalNet, global estimates of coastal oceanographic connectivity

description: The dataset encompasses two components: (1) a GeoPackage file (referencePolygons.gpkg) designed for geographic information systems (GIS), containing the spatial distribution of the hexagon-shaped coastal sites, each with a unique identifier (id), and (2) a comma-separated values compressed file (oceanographicConnectivity.csv.zip) containing a matrix detailing the realized connections between pairs of sites. This matrix includes information on the source site (id), sink site (id), date of particle release (day, month, year), and the corresponding travel time expressed in days.Users have two primary options for utilizing the dataset: they can either work directly with the geospatial vector for GIS, paired with the corresponding matrix of realized connections, to retrieve pairwise connectivity estimates between coastal sites globally, or they can use the coastalNet R package for streamlined access and analysis.For users opting to work within a GIS environment, the geospatial vector file contains the spatial distribution of the coastal hexagons, each identified by a unique ID. By identifying the source and sink sites of interest within the spatial data, users can retrieve the corresponding hexagon IDs. These IDs can then be cross-referenced with the matrix of realized connectivity events, which includes information on particle release date, source ID, sink ID, and travel time. This allows users to easily extract the specific connectivity events between selected sites, providing a flexible and detailed approach to analyzing connectivity patterns directly within GIS.For users opting to work within R, the coastalNet package can facilitate the use of the provided oceanographic connectivity estimates. It offers a comprehensive suite of functions for accessing, analyzing, and visualizing connectivity data. Check https://github.com/jorgeassis/coastalNet for additional information.
DOI: 10.3535/97s-0tb-004
title: †Nicholsonella Ulrich, 1890

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/lmf-h7c-v2c
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1170184.v1
title: Instructional Lab

description: Data was collected from 30 individuals around campus, close to Lumbers building. Hair colour from roots were observed as well as gender. Hair colour was categorized as black, brown, or blonde. Gender was categorized as male or female.
DOI: 10.3535/035-xfr-x79
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1d6-ls1-25t
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.9031481.v1
title: Prairie rattlesnake repeat element annotation

description: Repeat element annotations for the prairie rattlesnake genome assembly.
DOI: 10.6084/m9.figshare.c.3924706_d3.v1
title: MOESM3 of 
                     Plasmodium falciparum variant erythrocyte surface antigens: a pilot study of antibody acquisition in recurrent natural infections

description: Additional file 3: Table S2. A recrudescence is not determined by the drug sensitivity of the baseline isolate.
DOI: 10.17632/9jz9wh5fj4
title: Acaricidal Activity and Toxic Mechanism of Origanum onites Plant Essential Oil and Its Constituent Carvacrol against Haemaphysalis doenitzi (Acari: Ixodidae)

description: Phylogenetic tree of HDABCE1 and their homologous ATP-binding cassette transporter proteins subfamily E.
DOI: 10.3535/7fx-fqn-qv2
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qt2-x1a-vw2
title: †Phymatopleuridae Batten, 1956

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.