cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1327779.v1
title: S1 HOPG CORR TABLE

description: Study I correlation table of H-OPG
DOI: 10.6084/m9.figshare.1328031.v22
title: Manchester Fly Facility Resources

description: These resources were made available by the Manchester Fly Facility (see link below)
DOI: 10.6084/m9.figshare.1327775.v1
title: Hopg_I_all_items_loading_table

description: It's exactly what the title says. Study I.
DOI: 10.6084/m9.figshare.1327776.v1
title: SI_OPG_CORR_TABLE

description: Study I, HOPG Correlation Table.
DOI: 10.6084/m9.figshare.1327773
title: STUDY_I_BFF_7_G_SOLUTION_raw.csv

description: STUDY_I_BFF_7_G_SOLUTION_raw.csv
DOI: 10.6084/m9.figshare.1327774
title: STUDY_I_BFF_CORR_TABLE

description: STUDY_I_BFF_CORR_TABLE
DOI: 10.6084/m9.figshare.1327773.v1
title: STUDY_I_BFF_7_G_SOLUTION_raw.csv

description: STUDY_I_BFF_7_G_SOLUTION_raw.csv
DOI: 10.6084/m9.figshare.1328031.v23
title: Manchester Fly Facility Resources

description: These resources were made available by the Manchester Fly Facility (see link below)
DOI: 10.6084/m9.figshare.1327772
title: SI FINAL BFF 7 OBLIMIN.xls

description: SI FINAL BFF 7 OBLIMIN.xls
DOI: 10.6084/m9.figshare.1327774.v1
title: STUDY_I_BFF_CORR_TABLE

description: STUDY_I_BFF_CORR_TABLE
DOI: 10.6084/m9.figshare.1327771
title: Study_I_BFAS_CORR_TABLE.csv

description: Study I, Big Five Aspect Scales, you get the drill.
DOI: 10.6084/m9.figshare.1327770
title: STUDY_I_BFAS_5_G_SOLUTION

description: Plots for the plot god. Tropes for the throne king.
DOI: 10.6084/m9.figshare.1327771.v1
title: Study_I_BFAS_CORR_TABLE.csv

description: Study I, Big Five Aspect Scales, you get the drill.
DOI: 10.6084/m9.figshare.1327772.v1
title: SI FINAL BFF 7 OBLIMIN.xls

description: SI FINAL BFF 7 OBLIMIN.xls
DOI: 10.6084/m9.figshare.1328031.v24
title: Manchester Fly Facility Resources

description: These resources were made available by the Manchester Fly Facility (see link below)
DOI: 10.6084/m9.figshare.1327769
title: FINAL_BFAS_5_OBLIMIN_checked_STUDY_I

description: Here is a description forced upon this unsuspecting dataset by the figshare user interface. Study I, BFAS, Oblimin rotated factor loadings. I promise you it's all in the title.
DOI: 10.6084/m9.figshare.1327764
title: Helpme: All Chilean pharma patents applied for prior to 2011

description: Helpme file
DOI: 10.6084/m9.figshare.1327769.v1
title: FINAL_BFAS_5_OBLIMIN_checked_STUDY_I

description: Here is a description forced upon this unsuspecting dataset by the figshare user interface. Study I, BFAS, Oblimin rotated factor loadings. I promise you it's all in the title.
DOI: 10.6084/m9.figshare.1327770.v1
title: STUDY_I_BFAS_5_G_SOLUTION

description: Plots for the plot god. Tropes for the throne king.
DOI: 10.6084/m9.figshare.1328031.v25
title: Manchester Fly Facility Resources

description: These resources were made available by the Manchester Fly Facility (see link below)
DOI: 10.6084/m9.figshare.1327762
title: All Chilean pharma patents applied for prior to 2011

description: All Chilean pharma patents applied for prior to 2011
DOI: 10.6084/m9.figshare.1327763
title: Helpme: A match of Chilean pharma patents to the ISP register

description: Helpme file
DOI: 10.6084/m9.figshare.1327763.v1
title: Helpme: A match of Chilean pharma patents to the ISP register

description: Helpme file
DOI: 10.6084/m9.figshare.1327761
title: A match of Chilean pharma patents to the ISP register

description: A match of Chilean pharma patents to the ISP register
DOI: 10.6084/m9.figshare.1328031.v26
title: Manchester Fly Facility Resources

description: These resources were made available by the Manchester Fly Facility (see link below)
DOI: 10.6084/m9.figshare.1327761.v1
title: A match of Chilean pharma patents to the ISP register

description: A match of Chilean pharma patents to the ISP register
DOI: 10.6084/m9.figshare.1327764.v1
title: Helpme: A match of Chilean pharma patents to the ISP register

description: Helpme file
DOI: 10.6084/m9.figshare.1328031.v27
title: Manchester Fly Facility Resources

description: These resources were made available by the Manchester Fly Facility (see link below)
DOI: 10.6084/m9.figshare.1327764.v2
title: Helpme: All Chilean pharma patents applied for prior to 2011

description: Helpme file
DOI: 10.6084/m9.figshare.1328031.v28
title: Manchester Fly Facility Resources

description: These resources were made available by the Manchester Fly Facility (see link below)
DOI: 10.6084/m9.figshare.1327764.v4
title: Helpme: All Chilean pharma patents applied for prior to 2011

description: Helpme file
DOI: 10.6084/m9.figshare.1327764.v3
title: Helpme: A match of Chilean pharma patents to the ISP register

description: Helpme file
DOI: 10.6084/m9.figshare.1327717
title: Efficient Implementations of the Generalized Lasso Dual Path Algorithm

description: We consider efficient implementations of the generalized lasso dual path algorithm of Tibshirani & Taylor (2011). We first describe a generic approach that covers any penalty matrix <i>D</i> and any (full column rank) matrix <i>X</i> of predictor variables. We then describe fast implementations for the special cases of trend filtering problems, fused lasso problems, and sparse fused lasso problems, both with <i>X</i> = <i>I</i> and a general matrix <i>X</i>. These specialized implementations offer a considerable improvement over the generic implementation, both in terms of numerical stability and efficiency of the solution path computation. These algorithms are all available for use in the genlasso R package, which can be found in the CRAN repository.
DOI: 10.6084/m9.figshare.1327717.v1
title: Efficient Implementations of the Generalized Lasso Dual Path Algorithm

description: We consider efficient implementations of the generalized lasso dual path algorithm of Tibshirani & Taylor (2011). We first describe a generic approach that covers any penalty matrix <i>D</i> and any (full column rank) matrix <i>X</i> of predictor variables. We then describe fast implementations for the special cases of trend filtering problems, fused lasso problems, and sparse fused lasso problems, both with <i>X</i> = <i>I</i> and a general matrix <i>X</i>. These specialized implementations offer a considerable improvement over the generic implementation, both in terms of numerical stability and efficiency of the solution path computation. These algorithms are all available for use in the genlasso R package, which can be found in the CRAN repository.
DOI: 10.15482/usda.adc/1503679
title: Delta Neighborhood Physical Activity Study
DOI: 10.6084/m9.figshare.1327697
title: Compute du/dt

description: Calculate the local tendency of zonal wind during DYNAMO
DOI: 10.6084/m9.figshare.1327695
title: Parallel variational Bayes for large datasets with an application to generalized linear mixed models

description: The article develops a hybrid Variational Bayes algorithm that combines the mean-field and stochastic linear regression fixed-form Variational Bayes methods. The new estimation algorithm can be used to approximate any posterior without relying on conjugate priors. We propose a divide and recombine strategy for the analysis of large datasets, which partitions a large dataset into smaller subsets and then combines the variational distributions that have been learnt in parallel on each separate subset using the hybrid Variational Bayes algorithm. We also describe an efficient model selection strategy using cross validation, which is straightforward to implement as a by-product of the parallel run. The proposed method is applied to fitting generalized linear mixed models. The computational efficiency of the parallel and hybrid Variational Bayes algorithm is demonstrated on several simulated and real datasets. Supplementary material for this article is available online.
DOI: 10.6084/m9.figshare.1327695.v1
title: Parallel variational Bayes for large datasets with an application to generalized linear mixed models

description: The article develops a hybrid Variational Bayes algorithm that combines the mean-field and stochastic linear regression fixed-form Variational Bayes methods. The new estimation algorithm can be used to approximate any posterior without relying on conjugate priors. We propose a divide and recombine strategy for the analysis of large datasets, which partitions a large dataset into smaller subsets and then combines the variational distributions that have been learnt in parallel on each separate subset using the hybrid Variational Bayes algorithm. We also describe an efficient model selection strategy using cross validation, which is straightforward to implement as a by-product of the parallel run. The proposed method is applied to fitting generalized linear mixed models. The computational efficiency of the parallel and hybrid Variational Bayes algorithm is demonstrated on several simulated and real datasets. Supplementary material for this article is available online.
DOI: 10.6084/m9.figshare.1327692
title: Datasets for Blackwell et al. 2015

description: Analysis datasets in comma-delimited text format (.csv file extension). These datasets accompany the manuscript submitted in 2015 to PLOS ONE for publication: Blackwell, S.B., C.S. Nations, T.L. McDonald, A.M. Thode, D. Mathias, K.H. Kim, C.R. Greene, Jr., and A.M. Macrander. Effects of airgun sounds on bowhead whale calling rates: evidence for two behavioral thresholds. There are three datasets, one each for time intervals of 5, 10, and 20 minutes. There are four fields in each dataset: dasar, datetime, whalecalls, and csel.
DOI: 10.6084/m9.figshare.1327697.v2
title: Compute du/dt

description: Calculate the local tendency of zonal wind during DYNAMO
DOI: 10.6084/m9.figshare.1327697.v1
title: Compute du/dt

description: Calculate the local tendency of zonal wind during DYNAMO
DOI: 10.6084/m9.figshare.1327642
title: tiller_set3-A versatile phenotyping system and analytics platform reveals diverse temporal responses to water limitation in Setaria

description: set of 58 images curated for tiller count, tiller angle, and leaf angle with manual measurements from images
DOI: 10.6084/m9.figshare.1327660
title: Bacterial diversity and Clostidia abundance decrease with increasing severity of necrotizing enterocolitis

description: FNA, QUAL, and Mapping file used in the study.
DOI: 10.6084/m9.figshare.1327636
title: biomass_set1_A versatile phenotyping system and analytics platform reveals diverse temporal responses to water limitation in Setaria

description: This is the set of images that we have manual fresh weight biomass measurements for.
DOI: 10.6084/m9.figshare.1327642.v1
title: tiller_set3-A versatile phenotyping system and analytics platform reveals diverse temporal responses to water limitation in Setaria

description: set of 58 images curated for tiller count, tiller angle, and leaf angle with manual measurements from images
DOI: 10.6084/m9.figshare.1327636.v1
title: biomass_set1_A versatile phenotyping system and analytics platform reveals diverse temporal responses to water limitation in Setaria

description: This is the set of images that we have manual fresh weight biomass measurements for.
DOI: 10.6084/m9.figshare.1327632
title: USA Olympic Medal Winners 2000 - 2012

description: This data set contains the list of Olympic medal winners from 2000 till 2012 for countries United States of America. This is a subset of the original data set downloaded from Tableau Software.
DOI: 10.6084/m9.figshare.1327581
title: Wirebrush4SPAM Trend Filters

description: Contains two filter definition (positive and negative trend filter) for Wirebrush4SPAM filtering platform
DOI: 10.6084/m9.figshare.1327581.v1
title: Wirebrush4SPAM Trend Filters

description: Contains two filter definition (positive and negative trend filter) for Wirebrush4SPAM filtering platform
DOI: 10.6084/m9.figshare.1327629
title: Network Data

description: Hydrological network tree structure network data
DOI: 10.6084/m9.figshare.1327564
title: Quality OF Work Life (QWL) and Absenteeism Index (AI) in a small business

description: The competition between companies is generating a reduction in profitability ratios of the same, forcing the optimization of the production process, thus obtaining, greater efficiency in the allocation of factors of production involved. This research aims to correlate the rate of absenteeism with indicators of Quality of Work Life (QWL), through the results of a case study applied between employees of a brick small factory (pottery), located in central region of Rio Grande do Sul, Brazil. For this, a method of qualitative research was used, which enables the researcher to evaluate in detail the practice of improving QWL, as quantitative in the identification of satisfaction and absenteeism rates. It was found that in the company is no correlation between absenteeism and QWL, being the category of “attendants” that had the highest rate of absenteeism and job dissatisfaction, on issues of QWL. In general, it can be concluded that most of the causes of absenteeism is related to the low level of employees satisfaction with their work, undermining personal relationships, principles of QWL, and hence production levels.
DOI: 10.6084/m9.figshare.1327565
title: Supplementary Tables: Movement Enhances Perceived Timing in the Absence of Auditory Feedback

description: Moving (tapping) to a beat can objectively improve the perception of timing. Here we examine whether auditory feedback from tapping is a requirement for this improvement. In this experiment, two groups of participants heard a series of isochronous beats, and identified whether a probe tone after a short silence was consistent with the timing of the preceding sequence. On half of the trials, participants tapped along on an electronic drum pad up to and including the probe tone, and on half of the trials they listened without tapping. In the auditory feedback (AF) group sounds from tapping were available to participants and in the no auditory feedback (NAF) group these sounds were masked using white noise. In both groups, movement improved timing judgments of the probe tone, however this improvement was more pronounced when auditory feedback was present. Additionally, tapping was more accurate when auditory feedback was available. While previously we demonstrated an effect of movement on perceived timing, here we clarify that movement alone is sufficient to trigger this improvement (independent of the movement’s auditory consequences). We identify the importance of auditory feedback as a cue for movement timing, which subsequently affects perceived timing of an external stimulus. Additionally we have demonstrated that movement alone can improve timing perception, independent of the auditory feedback caused by this movement.
DOI: 10.6084/m9.figshare.1327629.v1
title: Network Data

description: Hydrological network tree structure network data
DOI: 10.6084/m9.figshare.1327565.v1
title: Supplementary Tables: Movement Enhances Perceived Timing in the Absence of Auditory Feedback

description: Moving (tapping) to a beat can objectively improve the perception of timing. Here we examine whether auditory feedback from tapping is a requirement for this improvement. In this experiment, two groups of participants heard a series of isochronous beats, and identified whether a probe tone after a short silence was consistent with the timing of the preceding sequence. On half of the trials, participants tapped along on an electronic drum pad up to and including the probe tone, and on half of the trials they listened without tapping. In the auditory feedback (AF) group sounds from tapping were available to participants and in the no auditory feedback (NAF) group these sounds were masked using white noise. In both groups, movement improved timing judgments of the probe tone, however this improvement was more pronounced when auditory feedback was present. Additionally, tapping was more accurate when auditory feedback was available. While previously we demonstrated an effect of movement on perceived timing, here we clarify that movement alone is sufficient to trigger this improvement (independent of the movement’s auditory consequences). We identify the importance of auditory feedback as a cue for movement timing, which subsequently affects perceived timing of an external stimulus. Additionally we have demonstrated that movement alone can improve timing perception, independent of the auditory feedback caused by this movement.
DOI: 10.6084/m9.figshare.1327540
title: Evaluation of reoxygenation slope using Near-infrared spectroscopy in intensive care patients

description: Objective: To evaluate the reoxygenation slope reactivity in intensive care patients using near-infrared spectrophotometry (NIRS). Design: an observational prospective study. Setting: A 15-beds intensive care unit of a teaching hospital Patients: Consecutive patients admitted to the intensive care unit with severe sepsis (Sepsis; n=25 patients), without sepsis (Control; n=22 patients); a group of healthy volunteers (n=50). Measurements: Baseline thenar muscle tissue oxygen saturation (StO2), Maximal StO2 reperfusion slope and the area under the curve for the hyperhemic response were measured during and after a 150 seconds arterial occlusion. Measurements were performed at the early phase of hospitalization and compared to measurements obtained in healthy volunteers. Results: Mean initial StO2 values were comparable between the 3 groups. During arterial occlusion, maximal StO2 reperfusion slope was higher in healthy volunteers (361 ± 137 %.min-1), as compared to both Sepsis (111.3 ± 56.9 %.min-1; p=0.0002) and Control groups (163.3 ± 120.5 %.min-1; p=0.01). Maximal StO2 reperfusion slope was comparable between Sepsis and Control (p=0.55). In Sepsis, StO2 reperfusion slope and the area under the curve for the hyperemic response were similar whatever the mean arterial pressure or the blood lactate levels. Conclusion: Microvascular postocclusive reactivity assessed by NIRS is significantly altered on admission within ICU patients, as compared to healthy volunteers. However, In contrast to our expectancies, no difference was observed between Sepsis and Control.
DOI: 10.6084/m9.figshare.1327540.v1
title: Evaluation of reoxygenation slope using Near-infrared spectroscopy in intensive care patients

description: Objective: To evaluate the reoxygenation slope reactivity in intensive care patients using near-infrared spectrophotometry (NIRS). Design: an observational prospective study. Setting: A 15-beds intensive care unit of a teaching hospital Patients: Consecutive patients admitted to the intensive care unit with severe sepsis (Sepsis; n=25 patients), without sepsis (Control; n=22 patients); a group of healthy volunteers (n=50). Measurements: Baseline thenar muscle tissue oxygen saturation (StO2), Maximal StO2 reperfusion slope and the area under the curve for the hyperhemic response were measured during and after a 150 seconds arterial occlusion. Measurements were performed at the early phase of hospitalization and compared to measurements obtained in healthy volunteers. Results: Mean initial StO2 values were comparable between the 3 groups. During arterial occlusion, maximal StO2 reperfusion slope was higher in healthy volunteers (361 ± 137 %.min-1), as compared to both Sepsis (111.3 ± 56.9 %.min-1; p=0.0002) and Control groups (163.3 ± 120.5 %.min-1; p=0.01). Maximal StO2 reperfusion slope was comparable between Sepsis and Control (p=0.55). In Sepsis, StO2 reperfusion slope and the area under the curve for the hyperemic response were similar whatever the mean arterial pressure or the blood lactate levels. Conclusion: Microvascular postocclusive reactivity assessed by NIRS is significantly altered on admission within ICU patients, as compared to healthy volunteers. However, In contrast to our expectancies, no difference was observed between Sepsis and Control.
DOI: 10.6084/m9.figshare.1327537
title: Tetrapod Skull Adjacency Matrices

description: Adjacency matrices for 44 skulls of vertebrates. See: <strong>Esteve-Altava B</strong>, Marugán-Lobón J, Botella H, Rasskin-Gutman D. 2013. Structural constraints in the evolution of the tetrapod skull complexity: Williston’s Law revisited using network models. Evolutionary Biology 40: 209-219. DOI: 10.1007/s11692-012-9200-9
DOI: 10.6084/m9.figshare.1327494
title: HVolunteers

description: Monitoring of Healthy volunteers
DOI: 10.6084/m9.figshare.1327457
title: Matriz de Similitud (coseno) entre Universidades según su presencia en prensa española

description: Matriz de universidades españolas según su presencia en cabeceras de prensa española en los meses de septiembre y octubre de 2014. Se ha utilizado el coseno de Salton
DOI: 10.6084/m9.figshare.1327494.v1
title: HVolunteers

description: Monitoring of Healthy volunteers
DOI: 10.6084/m9.figshare.1327451
title: tiller-test_set2-A versatile phenotyping system and analytics platform reveals diverse temporal responses to water limitation in Setaria

description: Set of images with manual tiller measurementments
DOI: 10.6084/m9.figshare.1327440
title: Yeast genome flexibility data

description: Data for Menconi G, Bedini A, Barale R, Sbrana I (2015) Global Mapping of DNA Conformational Flexibility on Saccharomyces cerevisiae. PLoS Comput Biol 11(4): e1004136. doi: 10.1371/journal.pcbi.1004136
DOI: 10.6084/m9.figshare.1327457.v2
title: Matriz de Similitud (coseno) entre Universidades según su presencia en prensa española

description: Matriz de universidades españolas según su presencia en cabeceras de prensa española en los meses de septiembre y octubre de 2014. Se ha utilizado el coseno de Salton
DOI: 10.6084/m9.figshare.1327451.v1
title: tiller-test_set2-A versatile phenotyping system and analytics platform reveals diverse temporal responses to water limitation in Setaria

description: Set of images with manual tiller measurementments
DOI: 10.6084/m9.figshare.1327457.v1
title: Matriz de Similitud entre Universidades según su presencia en prensa española

description: Matriz de universidades españolas según su presencia en cabeceras de prensa española en los meses de septiembre y octubre de 2014.
DOI: 10.6084/m9.figshare.1326739
title: Browser Choices of Wikimedia Readers and Editors

description: A dataset of parsed reader and editor browser agents from the Wikimedia web properties. Keyes, Oliver (2015): Browser Choices of Wikimedia Readers and Editors. fig<strong>share</strong>. http://dx.doi.org/10.6084/m9.figshare.1326738 Retrieved 23:40, Mar 05, 2015 (GMT)
DOI: 10.6084/m9.figshare.1326728
title: MAPK Data Set 2

description: Single cell flow cytometry data of PMA stimulated T cells.
DOI: 10.6084/m9.figshare.1326726
title: PMA Doses MAPK Data Set 2

description: This file contains experimental doses of PMA administered to T cells corresponding to the data in MAPK Data Set 2.
DOI: 10.6084/m9.figshare.1326724
title: PMA Doses MAPK Data Set 1

description: This file contains experimental doses of PMA administered to T cells corresponding to the data in MAPK Data Set 1.
DOI: 10.6084/m9.figshare.1326726.v1
title: PMA Doses MAPK Data Set 2

description: This file contains experimental doses of PMA administered to T cells corresponding to the data in MAPK Data Set 2.
DOI: 10.6084/m9.figshare.1326721
title: MAPK Data Set 1

description: Single cell flow cytometry data of PMA stimulated T cells.
DOI: 10.6084/m9.figshare.1326724.v1
title: PMA Doses MAPK Data Set 1

description: This file contains experimental doses of PMA administered to T cells corresponding to the data in MAPK Data Set 1.
DOI: 10.6084/m9.figshare.1326720
title: Concatenation and species tree methods exhibit statistically indistinguishable accuracy under a range of simulated conditions

description: 50speciesTrees: Fifty species trees of eight taxa. Trees are in newick format but .nex extension needed for simulation script to work simulation.pl : Perl script to simulate 540 gene trees with corresponding 1000bp sequences for all 50 species trees at both tree depths and with varying number of individuals per species. Requires seqgen and ms in same directory to run mbconcat2.py : Python script to concatenate by three, nine and 27 and run MrBayes. Nexus files for each species tree must be in own directory. Input and output directories need to be provided