cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.b9j94n3
title: Data from: Assortative mating by flowering time and its effect on correlated traits in variable environments

description: Reproductive timing is a key life history trait that impacts the pool of
 available mates, the environment experienced during flowering, and the
 expression of other traits through genetic covariation. Selection on
 phenology, and its consequences on other life history traits, has
 considerable implications in the context of ongoing climate change and
 shifting growing seasons. To test this, we grew field-collected seed from
 the wildflower Mimulus guttatus in a greenhouse to assess the standing
 genetic variation for flowering time and covariation with other traits. We
 then created full-sib families through phenological assortative mating and
 grew offspring in three photoperiod treatments representing seasonal
 variation in daylength. We find substantial quantitative genetic variation
 for the onset of flowering time, which covaried with vegetative traits. In
 the assortatively-mated offspring, we discover over 2-hours variation in
 critical photoperiod, so that families differed in the probability of
 flowering across treatments. Allocation to flowering and vegetative growth
 changed across the daylength treatments, with consistent direction and
 magnitude of covariation amongst flowering time and other traits. Our
 results suggest that future studies of flowering time evolution should
 consider the joint evolution of correlated traits and shifting seasonal
 selection to understand how environmental variation influences life
 histories.
description: Rubin et al. Ecology and
 Evolution DataPhenotypic data for each
 replicate Mimulus guttatus plant in the parental (greenhouse) and progeny
 (growth chamber) generations.
DOI: 10.4121/f6e538c0-2d0f-4b8b-9ebb-7f53a94d691e
title: Data underlying paper "Knowledge management dynamics in Offshore Wind Farm development in the Netherlands"

description: The dataset contains 4 type of data, collected for the NWO-NWA project 123618001 '<em>Effects of windfarms on the marine ecosystem, and implications for governance. </em>The objective is to elicit the knowledge-policy landscape of Offshore Wind Farms in the Netherlands, as well as perspectives on knowledge and its use in the policy process. Data consists of open and structured interviews, a workshop, and policy documents. Data types include the interview format, scores on knowledge, timeline of policy development and knowledge topics
DOI: 10.4121/f6e538c0-2d0f-4b8b-9ebb-7f53a94d691e.v1
title: Data underlying paper "Knowledge management dynamics in Offshore Wind Farm development in the Netherlands"

description: The dataset contains 4 type of data, collected for the NWO-NWA project 123618001 '<em>Effects of windfarms on the marine ecosystem, and implications for governance. </em>The objective is to elicit the knowledge-policy landscape of Offshore Wind Farms in the Netherlands, as well as perspectives on knowledge and its use in the policy process. Data consists of open and structured interviews, a workshop, and policy documents. Data types include the interview format, scores on knowledge, timeline of policy development and knowledge topics
DOI: 10.5061/dryad.nt2dp
title: Data from: Whitefly aggregation on tomato is mediated by feeding-induced changes in plant metabolites that influence the behavior and performance of conspecifics

description: 1.Leaf damage caused by herbivore feeding often triggers induced
 resistance in plants. However, some herbivores can take advantage of the
 resulting metabolic changes in host plants and may even manipulate plant
 resistance, leading to a phenomenon known as induced susceptibility.
 2.Previous work has shown that feeding by the whitefly Bemisia tabaci can
 reduce tomato Solanum lycopersicum resistance and that whiteflies tended
 to aggregate on infested plants. However, metabolomic changes in the plant
 and associated whitefly behavioral responses underlying this phenomenon
 remain poorly understood. We therefore investigated how B. tabaci
 infestation affects host physiology and the preference and performance of
 conspecific feeders. 3.B. tabaci adults exhibited consistent behavioral
 preferences for plants that experienced actual and simulated herbivory by
 conspecifics (consistent with observed effects on whitefly performance),
 but not for plants that were only mechanically wounded. Leaf volatiles and
 extracts of B. tabaci-infested plants showed altered terpenoid and
 flavonoid profiles. Manipulative behavioral experiments indicated that
 suppression of the monoterpenes α-phellandrene and α-terpinene and of
 flavonoids by B. tabaci infestation influenced the foraging and
 oviposition preferences of conspecifics. 4.These findings document key
 metabolic changes in plants exhibiting induced susceptibility and
 demonstrate their role in mediating herbivore foraging behavior and
 aggregation on susceptible plants, thereby providing new insight into a
 relatively unexplored aspect of plant-herbivore interactions.
description: Whitefly attack triggers
 conspecific attraction
DOI: 10.5061/dryad.q14c1
title: Data from: Bioinformatic processing of RAD-seq data dramatically impacts downstream population genetic inference

description: Restriction site-associated DNA sequencing (RAD-seq) provides
 high-resolution population genomic data at low cost, and has become an
 important component in ecological and evolutionary studies. As with all
 high-throughput technologies, analytic strategies require critical
 validation to ensure accurate and unbiased interpretation. To test for the
 impact of bioinformatic data processing on downstream population genetic
 inferences, we analysed mammalian RAD-seq data (&gt;100 individuals)
 with 312 combinations of methodology (de novo vs. mapping to references of
 increasing divergence) and filtering criteria (missing data, HWE, FIS,
 coverage, mapping, genotype quality). In an effort to identify
 commonalities and biases in all pipelines, we computed summary statistics
 (nr. loci, nr. SNP, π, Hetobs, FIS, FST, Ne, m) and compared the results
 to independent null expectations (isolation-by-distance correlation,
 expected transition-to-transversion ratio Ts/Tv, Mendelian mismatch rates
 of known parent-offspring trios). We observed large differences between
 reference-based and de novo approaches, the former generally calling more
 SNPs and reducing FIS and Ts/Tv. Data completion levels showed little
 impact on most summary statistics, and FST estimates were robust across
 all pipelines. The site-frequency spectrum (SFS) was highly sensitive to
 the chosen approach as reflected in large variance of parameter estimates
 across demographic scenarios (single-population bottlenecks and
 isolation-with-migration model). Null-expectations were best met by
 reference-based approaches, though contingent on the specific criteria. We
 recommend RAD-seq studies employ reference-based approaches to a closely
 related genome, and due to the high stochasticity associated with the
 pipeline advocate the use of multiple pipelines to ensure robust
 population genetic and demographic inferences.
description: Galápagos sea lion
 reference genomesReference genomes of the
 Galápagos sea lion in fasta format. One is derived from the CLC workbench
 and the other from mapping to the Antarctic fur seal.Genome.tar.gz
DOI: 10.34780/02jdhjj3
title: Ulrich Mania, Die Gymnasien Priene. Zur Geschichte der Bauten einer Polisinstitution

description: Die Monographie zu den beiden Gymnasien Prienes ist eine archäologisch-historische und bauhistorische Arbeit, deren Ergebnisse auf Ausgrabungen in den beiden Baukomplexen, der Dokumentation des Baubestands und der Auswertung vorhergehender Forschungen beruhen. 
Ergänzend zur Publikation, die auf [iDAI.publications](https://publications.dainst.org/books/dai/catalog/book/2175) abrufbar ist, stehen auf iDAI.repo die digitalen Beilagen mit großformatigen Plänen, Ansichten, Schnitten und Rekonstruktionen zur Verfügung, die einen unverzichtbaren Bestandteil des Buches darstellen. 
Des Weiteren finden Sie hier die Tabelle zur Fundstatistik der Ausgrabungen. Sie soll es den Lesenden ermöglichen, sich einen Eindruck über die Zusammensetzung und Fundmenge der Befunde zu verschaffen, da zur qualitativen und chronologischen Auswertung der Ausgrabungen immer nur eine Auswahl von Fundstücken herangezogen werden kann.
DOI: 10.5061/dryad.519
title: Data from: Taxon sampling and reverse successive weighting

description: [No abstract entered]
description: Brochu Data
 SetBrochu.txt
DOI: 10.5061/dryad.7s6s8
title: Data from: Planktonic protistan communities in lakes along a large-scale environmental gradient

description: Despite their obvious importance, our knowledge about the eukaryotic
 microbial diversity of inland waters is still limited and poorly
 documented. We applied 18S rDNA amplicon sequencing to provide a
 comprehensive analysis of eukaryotic diversity in 74 low-productivity
 lakes along a 750 km longitudinal transect (5.40-18.52°E) across southern
 Scandinavia. We detected a wide diversity of pelagic microbial eukaryotes,
 classified into 1882 operational taxonomic units (OTUs). The highest OTU
 richness was found in traditional phytoplankton groups like
 Dinoflagellata, Chrysophyceae, Chlorophyta and Cryptophyta. A total of
 53.6% OTUs were primarily autotrophic, while 19.4% of the heterotrophic
 OTUs belonged to putative parasitic taxa. Except for a longitudinal trend
 in the relative influence of mixotrophs, there were no significant
 associations between major functional groups (autotrophs, heterotrophs and
 parasites) and spatial and environmental variables. Community
 dissimilarity increased significantly with increasing geographical
 distance between lakes. In accordance with earlier, microscopy-based
 surveys in this region, we demonstrate distinct gradients in protistan
 diversity and community composition, which are better explained by spatial
 structure than local environment. The strong association between longitude
 and protistan diversity is probably better explained by differences in
 regional species pools due to differences in landscape productivity than
 by dispersal limitation or climatic constraints.
description: Raw 454 reads and
 mapping files for planktonic protistan communities in Scandinavian
 lakesThis zip-file contains:
 1) raw reads from 454 Roche sequencing machine (.sff) 2) qual file (.qual)
 3) raw reads (.fna) 4) flowgram file (.flow) 5) mapping file for forward
 reads (.txt) and 6) mapping file for reverse reads (.txt). In forward
 mapping file forward primer is the linker primer and in reverse mapping
 file reverse primer is the linker primer to recover all reads from the
 mixed orientation raw data.Khomich_et_al_2016_FEMSEC.zip
DOI: 10.5061/dryad.r3mk2ng
title: Data from: The benefits of pair bond tenure in the cooperatively breeding pied babbler (Turdoides bicolor)

description: The benefits of stable pair bonds (that persist between breeding attempts)
 have been well described, but are relatively less well known in
 cooperatively breeding species. If pair bonds are beneficial, then it is
 possible that the bond between the behaviorally and socially dominant pair
 may influence factors such as reproductive success and group stability in
 cooperative species. Here we used long-term data to investigate the
 relationships between pair bond tenure, reproductive success and group
 stability in the cooperatively breeding pied babbler (Turdoides bicolor).
 Pair bond tenure positively influenced both the number of offspring
 recruited annually per pair, and total reproductive success (over entire
 pair bond duration), indicating that pair bond tenure has an important
 influence on reproductive success. The likelihood of immigration into the
 group was lower for groups containing a bonded pair with long tenure,
 indicating that the duration of pair bonds may impact group stability.
 These findings suggest that pair tenure, a hitherto relatively unexplored
 factor in cooperative species, may have an important influence on group
 dynamics.
description: PairBond_EMWARRExcel file containing individual and pair-level data used in analysisPB_EMWARR.xlsx
DOI: 10.5061/dryad.8fn8j
title: Data from: Large-scale fungal diversity assessment in the Andean Yungas forests reveals strong community turnover among forest types along an altitudinal gradient

description: The Yungas, a system of tropical and subtropical montane forests on the
 eastern slopes of the Andes, are extremely diverse and severely threatened
 by anthropogenic pressure and climate change. Previous mycological works
 focused on macrofungi (e.g., agarics, polypores) and mycorrhizae in Alnus
 acuminata forests, while fungal diversity in other parts of the Yungas has
 remained mostly unexplored. We carried out Ion Torrent sequencing of ITS2
 rDNA from soil samples taken at 24 sites along the entire latitudinal
 extent of the Yungas in Argentina. The sampled sites represent the three
 altitudinal forest types: the piedmont (400–700 masl), montane (700–1500
 masl), and montane cloud (1500–3000 masl) forests. The deep sequence data
 presented here (i.e. 4 108 126 quality-filtered sequences) indicate that
 fungal community composition correlates most strongly with elevation, with
 many fungi showing preference for a certain altitudinal forest type. For
 example, ectomycorrhizal and root endophytic fungi were most diverse in
 the montane cloud forests, particularly at sites dominated by Alnus
 acuminata, while the diversity values of various saprobic groups were
 highest at lower elevations. Despite the strong altitudinal community
 turnover, fungal diversity was comparable across the different zonal
 forest types. Besides elevation, soil pH, N, P, and organic matter
 contents correlated with fungal community structure as well, although most
 of these variables were co-correlated with elevation. Our data provide an
 unprecedented insight into the high diversity and spatial distribution of
 fungi in the Yungas forests.
description: ymerge.fastqRaw sequence data generated by Ion Torrent.otusRepresentative sequences of 97% similarity OTUsOTU_matrix_presence-absenceOTU / site distribution matrixOTU_matrix_presence.xls
DOI: 10.5061/dryad.21q9m
title: Data from: On the convergence and accuracy of the cardiovascular intrinsic frequency method

description: In this paper, we analyse the convergence, accuracy and stability of the
 intrinsic frequency (IF) method. The IF method is a descendant of the
 sparse time frequency representation methods. These methods are designed
 for analysing nonlinear and non-stationary signals. Specifically, the IF
 method is created to address the cardiovascular system that by nature is a
 nonlinear and non-stationary dynamical system. The IF method is capable of
 handling specific nonlinear and non-stationary signals with less
 mathematical regularity. In previous works, we showed the clinical
 importance of the IF method. There, we showed that the IF method can be
 used to evaluate cardiovascular performance. In this article, we will
 present further details of the mathematical background of the IF method by
 discussing the convergence and the accuracy of the method with and without
 noise. It will be shown that the waveform fit extracted from the signal is
 accurate even in the presence of noise.
description: Data
DOI: 10.5281/zenodo.18386512
title: Experimental measurements from the PRIN PNRR 2022 HYDRA project CUP: J53D23013850001(Block 3)

description: HYDRA Project (PRIN PNRR 2022) – Experimental Dataset Block 3 of 3

This dataset contains Block 3 of 3 experimental data collected within the HYDRA project (PRIN PNRR 2022), ID project number: P2022PY3AC, CUP: J53D23013850001

It provides a subset of the measurements generated as part of the project's experimental campaign.

 

 Description of the dataThe dataset includes measurements of environmental conditions, PV derived traits, biomass traits, hydraulics..  Data are provided in CSV UTF-8 format, with each file containing structured columns:

Files included:- `data_block1.csv`: main experimental measurements  - `README.md` README.pdf: detailed documentation

EmbargoThe data in this block are currently under embargo and will be publicly released upon publication of the associated paper. Access to the dataset prior to this date is restricted.
DOI: 10.5061/dryad.bg81d
title: Data from: Survey of haemosporidian parasites in resident and migrant game birds of Illinois

description: Haemosporidian parasites are globally distributed in avian species,
 capable of leading to decreased reproductive success, weakness and
 mortality. Haemosporidian parasites that affect reproduction and
 population growth are of interest to bird conservation groups and to
 organizations concerned with the health and immunological status of avian
 populations. Haemosporidian infection data are not always available for
 some avian species in specific regions yet. These data provides the
 starting points to evaluate geographical and temporal changes in the
 patterns of infection and prevalence across populations. We examined
 haemoparasite infections in four game bird species commonly hunted in
 Illinois. Prevalence, mean intensity, median intensity and mean abundance
 of haemosporidians were calculated, and the relation of these infection
 measures associated with age and sex of the avian hosts were evaluated.
 Game species sampled (n = 237) included migrants such as mourning doves
 (Zenaida macroura), wood ducks (Aix sponsa) and Canada geese (Branta
 canadensis), as well as resident birds such as wild turkeys (Meleagris
 gallopavo). Only Haemoproteus, Plasmodium, and Leucocytozoon species were
 identified. Haemoproteus was the most prevalent haemosporidian (46/237),
 followed by Plasmodium (11/237). Furthermore, Haemoproteus was the most
 persistent haemosporidian, as it was the only parasite genera found in all
 four avian species. Co-infections were found in 55% of turkeys, but no
 significant correlations between the genera of haemosporidinan
 co-infections and a host species were found. Moreover, no significant
 differences in the proportion of infected individuals (prevalence) and
 haemosporidian quantities (levels of intensity and abundance) were related
 to biotic factors such as age and sex of the host. However, parasite
 aggregation (distribution of parasites among hosts) was affected by age,
 as adult turkeys and juvenile doves showed the highest aggregation index
 (Poulin’s index of discrepancy D) for Haemoproteus spp. This study reveals
 patterns of infection and parasite aggregations that vary widely among
 different game bird species and provides baseline data on avian
 haemosporidians that, to the best of our knowledge, is not currently
 available in the state of Illinois for these avian species. Finally, these
 patterns can be used for management of landscape or host species to
 support conservation efforts.
description: Data file of sex, age
 and number of haemosporidians identified in game birds of
 IllinoisTable S1_ KL Annetti et al.
 2017.xlsx
DOI: 10.5281/zenodo.18386511
title: Experimental measurements from the PRIN PNRR 2022 HYDRA project CUP: J53D23013850001(Block 3)

description: HYDRA Project (PRIN PNRR 2022) – Experimental Dataset Block 3 of 3

This dataset contains Block 3 of 3 experimental data collected within the HYDRA project (PRIN PNRR 2022), ID project number: P2022PY3AC, CUP: J53D23013850001

It provides a subset of the measurements generated as part of the project's experimental campaign.

 

 Description of the dataThe dataset includes measurements of environmental conditions, PV derived traits, biomass traits, hydraulics..  Data are provided in CSV UTF-8 format, with each file containing structured columns:

Files included:- `data_block1.csv`: main experimental measurements  - `README.md` README.pdf: detailed documentation

EmbargoThe data in this block are currently under embargo and will be publicly released upon publication of the associated paper. Access to the dataset prior to this date is restricted.
DOI: 10.5061/dryad.5ff80
title: Data from: The global antigenic diversity of swine influenza A viruses

description: Swine influenza presents a substantial disease burden for pig populations
 worldwide and poses a potential pandemic threat to humans. There is
 considerable diversity in both H1 and H3 influenza viruses circulating in
 swine due to the frequent introductions of viruses from humans and birds
 coupled with geographic segregation of global swine populations. Much of
 this diversity is characterized genetically but the antigenic diversity of
 these viruses is poorly understood. Critically, the antigenic diversity
 shapes the risk profile of swine influenza viruses in terms of their
 epizootic and pandemic potential. Here, using the most comprehensive set
 of swine influenza virus antigenic data compiled to date, we quantify the
 antigenic diversity of swine influenza viruses on a multi-continental
 scale. The substantial antigenic diversity of recently circulating viruses
 in different parts of the world adds complexity to the risk profiles for
 the movement of swine and the potential for swine-derived infections in
 humans.
description: Figure 1. Source data
 1Figure 1. Source data 1
 - Input and output text files containing all H1 and H3 virus data used in
 Figure 1, Figure1 Supplemental 1,2,3, filesFigure1.Source data
 1.zipFigure 2. Source data
 2Figure 2. Source data 2
 - Input and output text files used to calculate H1 and H3 comparative
 rates of antigenic evolution and diversity shown in Figure 2 and
 Supplementary File 3_ Table 3Figure2.Source data
 2.zipSupplemental Table 1.
 Source DataSupplemental Table 1.
 Source Data - Text files and plots of summary statistics of testing in 1,
 2, 3, 4 and 5 dimensionsSupplemental Table1.Source
 Data.zipSupplemental Table 2.
 Source dataSupplemental Table
 2.Source data Text infiles, phylogenetic trees and source script for
 antigenic distance analysesSupplemental Table 2.Source
 data.zipFigure
 1Agif
 files for rotational views of 3D antigenic maps in Figure
 1Figure1A.H1_lineages.gifFigure 1Bgif files for rotational views of 3D antigenic maps in Figure 1Figure1B.H1_regions.gifFigure 1Cgif files for rotational views of 3D antigenic maps in Figure 1Figure1C.H3_lineages.gifFigure 1Dgif files for rotational views of 3D antigenic maps in Figure 1Figure1D.H3_regions.gif