cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.32gdtg
title: Occurrence Download

description: A dataset containing 1236 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trifolium echinatum M.Bieb."
 ]
}

 The dataset includes 1236 records from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133147-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u445db
title: Occurrence Download

description: A dataset containing 629 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dasychira obliquata Grote & Robinson, 1866"
 ]
}

 The dataset includes 629 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0125194-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fznhyd
title: Occurrence Download

description: A dataset containing 978 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Myiopagis olallai Coopmans & Krabbe, 2000"
 ]
}

 The dataset includes 978 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025095-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vypwxi
title: Occurrence Download

description: A dataset containing 215195 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is SysTax - Zoological Collections"
 ]
}

 The dataset includes 215195 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009894-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7bg2ju
title: Occurrence Download

description: A dataset containing 6378 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Hippolais languida (Hemprich & Ehrenberg, 1833)"
 ]
}

 The dataset includes 6378 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025172-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mppuvm
title: Occurrence Download

description: A dataset containing 378899 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is Coordinate rounded"
 ]
}

 The dataset includes 378899 records from 290 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111561-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jlxrjn
title: Occurrence Download

description: A dataset containing 1227 species occurrences available in GBIF matching the query:
{
 "and" : [
 "InstitutionCode is CJBN",
 "TaxonKey is Plantae",
 "HasCoordinate is TRUE",
 {
 "or" : [
 "Country is Albania",
 "Country is Austria",
 "Country is Bosnia and Herzegovina",
 "Country is Belgium",
 "Country is Bulgaria",
 "Country is Belarus",
 "Country is Switzerland",
 "Country is Cyprus",
 "Country is Czechia",
 "Country is Germany",
 "Country is Denmark",
 "Country is Estonia",
 "Country is Spain",
 "Country is Finland",
 "Country is France",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Country is Greece",
 "Country is Croatia",
 "Country is Hungary",
 "Country is Ireland",
 "Country is Iceland",
 "Country is Italy",
 "Country is Lithuania",
 "Country is Luxembourg",
 "Country is Latvia",
 "Country is Moldova, Republic of",
 "Country is Montenegro",
 "Country is Malta",
 "Country is North Macedonia",
 "Country is Netherlands",
 "Country is Norway",
 "Country is Poland",
 "Country is Portugal",
 "Country is Romania",
 "Country is Serbia",
 "Country is Russian Federation",
 "Country is Sweden",
 "Country is Slovenia",
 "Country is Slovakia",
 "Country is Ukraine"
 ]
 }
 ]
}

 The dataset includes 1227 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009894-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.razvhe
title: Occurrence Download

description: A dataset containing 33671 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Yasunia sessiliflora van der Werff, Yucca aloifolia L., Yucca baccata Torr., Yucca brevifolia Engelm., Yucca capensis L.W.Lenz, Yucca carnerosana (Trel.) McKelvey, Yucca decipiens Trel., Yucca declinata Laferr., Yucca elata (Engelm.) Engelm., Yucca faxoniana (Trel.) Sarg., Yucca filifera Chabaud, Yucca gigantea Lem., Yucca glauca Nutt., Yucca gloriosa L., Yucca grandiflora Gentry, Yucca jaliscensis (Trel.) Trel., Yucca madrensis Gentry, Yucca mixtecana García-Mend., Yucca periculosa Baker, Yucca potosina Rzed., Yucca queretaroensis Piña Luján, Yucca rostrata Engelm. ex Trel., Yucca schidigera Roezl ex Ortgies, Yucca thompsoniana Trel., Yucca treculeana Carrière, Yucca valida Brandegee, Yungasocereus inquisivensis (Cárdenas) F.Ritter)"
 ]
}

 The dataset includes 33671 records from 376 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138279-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6k76ky
title: Occurrence Download

description: A dataset containing 2424 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Africa",
 "TaxonKey is Ceratotherium simum simum",
 "Year 1980-2024"
 ]
}

 The dataset includes 2424 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025135-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vibafe
title: Occurrence Download

description: A dataset containing 580 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-75.68653 4.82005,-75.72292 4.81936,-75.74833 4.82279,-75.76 4.80773,-75.7394 4.78789,-75.71537 4.78378,-75.68172 4.7831,-75.66662 4.80089,-75.68653 4.82005))",
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasCoordinate is true",
 "TaxonKey is Psittaciformes",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 580 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009894-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3gebz7
title: Occurrence Download

description: A dataset containing 11764 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "MediaType is Image",
 "TaxonKey is Melilotus albus Medik."
 ]
}

 The dataset includes 11764 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0135947-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qkusca
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diospyros potingensis Merr. & Chun"
 ]
}

 The dataset includes 30 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025171-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tpehfs
title: Occurrence Download

description: A dataset containing 131 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is The mammals collection (ZM) of the Muséum national d'Histoire naturelle (MNHN - Paris)",
 "TaxonKey is Lepilemuridae"
 ]
}

 The dataset includes 131 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009895-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7sz3kz
title: Occurrence Download

description: A dataset containing 11692479 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Year 2000-2020"
 ]
}

 The dataset includes 11692479 records from 1361 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092522-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5222rj1b
title: MassIVE MSV000095929 - LCMSMS Streptomyces sp. PT6 ISP2 CuSO4 extract
title: Paper title:Biological Activities and Molecular Networking of Marine Sediment Streptomyces sp. PT6 Extracts Cultivated with Different Elicitors Author list: Rizky, Risa Nofiani*, Rudiyansyah, Muhamad Hanapi, Muhamad Arif Afrizal, Dina Ulayaa Aqilatun Najla, Des Saputro Wibowo, Agus Sukito, Fitri Setyoningrum
DOI: 10.15468/dl.r5b82b
title: Occurrence Download

description: A dataset containing 565 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Maesa indica (Roxb.) A.DC."
 ]
}

 The dataset includes 565 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026788-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13827961
title: Large Wood Surveys database, Spöl River, Switzerland

description: The following dataset is derived from wood surveys conducted in the Spöl River (Switzerland) before and after experimental floods released from the Ova-Spin dam. The dataset contains wood coordinate locations, unique identifying numbers, size dimensions (length, diameter, and volume), conditions in which the wood piece was observed (burial, jam, decay, orientation, and roots), and whether the observation is from the pre- or post-flood survey.

Only wood greater than ten-centimeters in diameter and one-meter in length were considered.
DOI: 10.5281/zenodo.13827962
title: Large Wood Surveys database, Spöl River, Switzerland

description: The following dataset is derived from wood surveys conducted in the Spöl River (Switzerland) before and after experimental floods released from the Ova-Spin dam. The dataset contains wood coordinate locations, unique identifying numbers, size dimensions (length, diameter, and volume), conditions in which the wood piece was observed (burial, jam, decay, orientation, and roots), and whether the observation is from the pre- or post-flood survey.

Only wood greater than ten-centimeters in diameter and one-meter in length were considered.
DOI: 10.5281/zenodo.13829220
title: Stress-strain curves of elastomers with different shore hardness

description: The dataset consists of stress-strain curves of elastomers with different shore hardness. The data could be useful to:- scientists interested in modelling/simulating such materials- scientists interested in designing new devices based on such materials

Any person interested in using the data must consent to give acknowledgement to this effort by explicitly mentioning MAGNELIQ (H2020, GA #899285).
DOI: 10.5281/zenodo.13829221
title: Stress-strain curves of elastomers with different shore hardness

description: The dataset consists of stress-strain curves of elastomers with different shore hardness. The data could be useful to:- scientists interested in modelling/simulating such materials- scientists interested in designing new devices based on such materials

Any person interested in using the data must consent to give acknowledgement to this effort by explicitly mentioning MAGNELIQ (H2020, GA #899285).
DOI: 10.15468/dl.8grmw9
title: Occurrence Download

description: A dataset containing 1504 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Santalum album L."
 ]
}

 The dataset includes 1504 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026793-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rdypwu
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Mikania micrantha Kunth"
 ]
}

 The dataset includes 52 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026794-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x2c6r3
title: Occurrence Download

description: A dataset containing 230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Living Specimen, Occurrence evidence)",
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Myotis escalerai Cabrera, 1904, Plecotus macrobullaris Kuzyakin, 1965)",
 "Year 2000-2024"
 ]
}

 The dataset includes 230 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026796-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rfxu5g
title: Occurrence Download

description: A dataset containing 794 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Venezuela (Bolivarian Republic of)",
 "StateProvince is one of (Apure, Amazonas, Bolívar)",
 "TaxonKey is Lepidoptera"
 ]
}

 The dataset includes 794 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026797-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12205887
title: Molecular dynamics trajectories of pYEEI:SH2 recognition, unbiased, at all-atom resolution.

description:  

Set of 772 all-atom trajectories simulated from an unbound (apo) configuration of the human p56 -lck tyrosine kinase SH2 domain with its high-specificity phosphopeptide recognition substrate pYEEI (initial structure based on PDB:1LKK ).  Approximately 24 trajectories spontaneously reach a bound state with ligand RMSD < 2 Â from the crystal. System building and run details are described in [1].

A preliminary version of this dataset have been analyzed and discussed in [1] (approx 200 ns per trajectory were available and used in [1]). 

The trajectories provided here are extended to ~800 ns each, for a total of ~640 μs sampled time. The full dataset is analyzed in [2] with a SOM-based technique.



Notes






These are all-atom simulations (with TIP3P water). Water molecules have been stripped off from these files (filtered).

Not all trajectories have the same length. Some are cut short due to the distributed computing setup.

Frame-to-frame interval is 1 ns.



Acknowledgments

We thank the volunteers of the GPUGRID.net project for donating computing time.

 

References

[1]  T. Giorgino, I. Buch, and G. De Fabritiis. Visualizing the Induced Binding of SH2-Phosphopeptide, J. Chem. Theory Comput. 2012, 8, 4, 1171-1175. doi:10.1021/ct300003f

[2] Lara Callea, Camilla Caprai, Laura Bonati, Toni Giorgino, Stefano Motta.  Self-Organizing Maps of Unbiased Ligand-Target Binding Pathways and Kinetics. J. Chem. Phys, 2024. https://doi.org/10.1063/5.0225183
DOI: 10.5281/zenodo.12205888
title: Molecular dynamics trajectories of pYEEI:SH2 recognition, unbiased, at all-atom resolution.

description:  

Set of 772 all-atom trajectories simulated from an unbound (apo) configuration of the human p56 -lck tyrosine kinase SH2 domain with its high-specificity phosphopeptide recognition substrate pYEEI (initial structure based on PDB:1LKK ).  Approximately 24 trajectories spontaneously reach a bound state with ligand RMSD < 2 Â from the crystal. System building and run details are described in [1].

A preliminary version of this dataset have been analyzed and discussed in [1] (approx 200 ns per trajectory were available and used in [1]). 

The trajectories provided here are extended to ~800 ns each, for a total of ~640 μs sampled time. The full dataset is analyzed in [2] with a SOM-based technique.



Notes






These are all-atom simulations (with TIP3P water). Water molecules have been stripped off from these files (filtered).

Not all trajectories have the same length. Some are cut short due to the distributed computing setup.

Frame-to-frame interval is 1 ns.



Acknowledgments

We thank the volunteers of the GPUGRID.net project for donating computing time.

 

References

[1]  T. Giorgino, I. Buch, and G. De Fabritiis. Visualizing the Induced Binding of SH2-Phosphopeptide, J. Chem. Theory Comput. 2012, 8, 4, 1171-1175. doi:10.1021/ct300003f

[2] Lara Callea, Camilla Caprai, Laura Bonati, Toni Giorgino, Stefano Motta.  Self-Organizing Maps of Unbiased Ligand-Target Binding Pathways and Kinetics. J. Chem. Phys, 2024. https://doi.org/10.1063/5.0225183
DOI: 10.21954/ou.rd.27087748
title: Supplementary materials for PhD thesis “Benthic assemblage development and larval ecology of marine invertebrates at Adelaide Island, Antarctica” -<b>Settlement ID images</b>

description: <i>This dataset</i><i> </i><i>comprises</i><i> </i><i>the files contained on a CD-ROM which was attached to the thesis when it was</i><i> </i><i>submitted</i><i> </i><i>in 2005</i><i>. It was uploaded to ORDO in 2024 for preservation purposes.</i><i> </i><i>For more information, please refer to the thesis</i><i> </i><i>Benthic assemblage development and larval ecology of marine invertebrates at Adelaide Island, Antarctica</i><i> </i><i>via ORO.</i>This thesis describes the first regularly resurveyed study of marine benthic colonisation processes at a location within the Antarctic Circle (660 30' S). Invertebrate assemblages on hard substrata were studied at 8 m and 20 m depths at three locations near Rothera Point, Adelaide Island (670 34' S, 68° 07' W). Assemblages on natural substrata were surveyed photographically and by sampling of cryptic sessile fauna. Recruitment to upper and lower surfaces of artificial substrata was monitored at monthly intervals through 1.5 yr and subsequent survival and growth of sessile assemblages was monitored photographically over 3 yr. Planktonic larvae of benthic invertebrates were surveyed at monthly intervals through 1.5 yr.Recruitment took place throughout the year but was strongly seasonal in most taxa. Many sessile taxa recruited during winter; apparently in direct contrast to a general pattern of summer recruitment in temperate latitudes. All vagile taxa, by contrast, recruited in summer, regardless of developmental type or time of spawning. Rates of assemblage development, and maximum growth rates of individual species, were slow compared with temperate latitudes but a biotic and biotic disturbances caused realised growth rates to be highly variable at scales of m - km. Ice impacts affected substrata at 8 m but the establishment of assemblages at both depths was controlled principally by postsettlement mortality from biotic disturbances, particularly grazing by the urchin <i>Sterechinus neumayeri</i>.Larvae were present in all months but most taxa showed strong seasonality of occurrence. Diversity of larval types was comparable with data from other Antarctic and temperate studies but abundances were higher than in a similar study at Signy Island (60043' S, 45° 36' W). The range of larval types, durations, and times of spawning argues against any strong selective pressures acting on developmental mode itself. Rather, the timing of settlement appears to be the characteristic of the life cycle that is most strongly selected for. It is suggested that differences between sessile and mobile taxa in the timing of settlement may be caused by the seasonal availability of food types for juvenile stages.