cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5cf9j76g
title: MassIVE Reanalysis RMSV000000354.4918 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, PPAP2A [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c57s7ht3p
title: MassIVE Reanalysis RMSV000000354.4919 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, PNPLA4 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5416t10r
title: MassIVE Reanalysis RMSV000000354.4916 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, TMEM66 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5086365w
title: MassIVE Reanalysis RMSV000000354.4920 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, BBS1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5vh5ck0h
title: MassIVE Reanalysis RMSV000000354.4922 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, APBA2 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5qr4nr6r
title: MassIVE Reanalysis RMSV000000354.4923 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, SNRPE [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.48370/ofd/mrqdfz/yhoi4d
title: Opiętek porzeczkowy (Agrilus ribesi).JPG

description: :unav
DOI: 10.48370/ofd/mrqdfz
title: Opiętek porzeczkowy (Agrilus ribesi (Schaeffer, 1946)), C-337

description: Coleoptera collection
DOI: 10.25345/c5m03xz3d
title: MassIVE Reanalysis RMSV000000354.4917 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, MTHFD2L [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5g73750j
title: MassIVE Reanalysis RMSV000000354.4921 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, NAB2 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5bk16q74
title: MassIVE Reanalysis RMSV000000354.4927 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, IGSF8 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c56t0gx4g
title: MassIVE Reanalysis RMSV000000354.4929 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, DACH1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5319s39d
title: MassIVE Reanalysis RMSV000000354.4924 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, ZWINT [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5281/zenodo.6239078
title: SEVIRI derived ET data sets V2

description: This data set is SEVIRI derived ET distributed by the EUMETSAT Satellite Application Facility on Land Surface Analysis (LSA SAF) (https://landsaf.ipma.pt/en/data/; last access: 1 December 2021). There are two relevant SEVIRI derived ET data sets (i) SEVIRI- actual ET (SEVIRI-ET<sub>a</sub>) that accounts for the water evaporated from the soil surface, vegetation canopy and water bodies, and (ii) SEVIRI- ‎reference ET (SEVIRI-ET<sub>0</sub>) that accounts for the (local) atmospheric demand and corresponds to the ET from a hypothetical well-watered green grass having 12 cm height and 0.23 albedo under the given down-welling short-wave radiation (Allen et al., 1998). These data sets are being provided in near real-time through the LSA SAF operational system and we used them in the GEOEssential project for water stress workflow development. For more information, please contact Dr. Bagher Bayat (bagher.bayat@gmail.com and b.bayat@fz-juelich.de).
DOI: 10.5281/zenodo.6239077
title: SEVIRI derived ET data sets V2

description: This data set is SEVIRI derived ET distributed by the EUMETSAT Satellite Application Facility on Land Surface Analysis (LSA SAF) (https://landsaf.ipma.pt/en/data/; last access: 1 December 2021). There are two relevant SEVIRI derived ET data sets (i) SEVIRI- actual ET (SEVIRI-ET<sub>a</sub>) that accounts for the water evaporated from the soil surface, vegetation canopy and water bodies, and (ii) SEVIRI- ‎reference ET (SEVIRI-ET<sub>0</sub>) that accounts for the (local) atmospheric demand and corresponds to the ET from a hypothetical well-watered green grass having 12 cm height and 0.23 albedo under the given down-welling short-wave radiation (Allen et al., 1998). These data sets are being provided in near real-time through the LSA SAF operational system and we used them in the GEOEssential project for water stress workflow development. For more information, please contact Dr. Bagher Bayat (bagher.bayat@gmail.com and b.bayat@fz-juelich.de).
DOI: 10.25345/c5z892g4d
title: MassIVE Reanalysis RMSV000000354.4926 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, FAM170A [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5th8bp08
title: MassIVE Reanalysis RMSV000000354.4928 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, PAK7 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.48370/ofd/9xcbf6
title: Phlebia subcretacea (Litsch) M.P. Christ., 1200

description: Fungarium Makromycetes
DOI: 10.6084/m9.figshare.19221192
title: Supplementary Material for: Correlation between Increased Monocyte Chemotactic Protein 1 Level and Lung Function in Patients with Asthma

description: <b><i>Background:</i></b> The altered expression of monocyte chemotactic protein 1 (MCP1) in bronchoalveolar fluid was observed in patients and animal models of allergic asthma. However, the correlation between induced sputum MCP1 level and asthma clinical features remains poorly understood. <b><i>Objective:</i></b> This study aims to explore the relationship of MCP1 protein expression in induced sputum with Th2 inflammation and asthma clinical features. <b><i>Methods:</i></b> MCP1 protein expression in induced sputum and serum was detected by ELISA in patients with asthma, and its correlation with Th2 inflammation and lung function was analyzed. The effect of inhaled corticosteroids (ICSs) on MCP1 expression was also evaluated. <b><i>Results:</i></b> The MCP1 level in induced sputum (<i>p</i> = 0.0006) and serum (<i>p</i> = 0.0035) was markedly increased and negatively correlated with forced expiratory volume in 1 s (FEV1)/forced vital capacity (FVC)% (<i>r</i> = −0.3674, <i>p</i> = 0.0001) and PC-20 (<i>r</i> = −0.5746, <i>p</i> &lt; 0.0001) in patients with asthma. The area under the curve (AUC) of MCP1 level receiver operating characteristic curve in induced sputum and serum was 0.7134 (<i>p</i> = 0.0007) and 0.7589 (<i>p</i> = 0.0042), respectively. The patients with asthma were grouped into four according to their induced sputum MCP1 level and Th2 signature categories (Th2<sup>Hi</sup> MCP1<sup>Hi</sup>, Th2<sup>Hi</sup> MCP1<sup>Low</sup>, Th2<sup>Low</sup> MCP1<sup>Hi</sup>, and Th2<sup>Low</sup> MCP1<sup>Low</sup>). The Th2<sup>Low</sup> MCP1<sup>Hi</sup> subgroup had the lowest FEV1/FVC% and histamine concentration required to cause a 20% decline in FEV1. After 4 weeks of ICS treatment, the MCP1 levels in induced sputum and serum were significantly reduced. <b><i>Conclusions:</i></b> The MCP1 level in induced sputum and serum increased in patients with asthma but decreased after ICS treatment. The Th2<sup>Low</sup> MCP1<sup>Hi</sup> subgroup had the worst lung function and highest airway hyperresponsiveness. The combination of MCP1 level in induced sputum and Th2 inflammation defines a new phenotype that can be used to predict lung function and treatment response in patients with asthma.
DOI: 10.6084/m9.figshare.19221192.v1
title: Supplementary Material for: Correlation between Increased Monocyte Chemotactic Protein 1 Level and Lung Function in Patients with Asthma

description: <b><i>Background:</i></b> The altered expression of monocyte chemotactic protein 1 (MCP1) in bronchoalveolar fluid was observed in patients and animal models of allergic asthma. However, the correlation between induced sputum MCP1 level and asthma clinical features remains poorly understood. <b><i>Objective:</i></b> This study aims to explore the relationship of MCP1 protein expression in induced sputum with Th2 inflammation and asthma clinical features. <b><i>Methods:</i></b> MCP1 protein expression in induced sputum and serum was detected by ELISA in patients with asthma, and its correlation with Th2 inflammation and lung function was analyzed. The effect of inhaled corticosteroids (ICSs) on MCP1 expression was also evaluated. <b><i>Results:</i></b> The MCP1 level in induced sputum (<i>p</i> = 0.0006) and serum (<i>p</i> = 0.0035) was markedly increased and negatively correlated with forced expiratory volume in 1 s (FEV1)/forced vital capacity (FVC)% (<i>r</i> = −0.3674, <i>p</i> = 0.0001) and PC-20 (<i>r</i> = −0.5746, <i>p</i> &lt; 0.0001) in patients with asthma. The area under the curve (AUC) of MCP1 level receiver operating characteristic curve in induced sputum and serum was 0.7134 (<i>p</i> = 0.0007) and 0.7589 (<i>p</i> = 0.0042), respectively. The patients with asthma were grouped into four according to their induced sputum MCP1 level and Th2 signature categories (Th2<sup>Hi</sup> MCP1<sup>Hi</sup>, Th2<sup>Hi</sup> MCP1<sup>Low</sup>, Th2<sup>Low</sup> MCP1<sup>Hi</sup>, and Th2<sup>Low</sup> MCP1<sup>Low</sup>). The Th2<sup>Low</sup> MCP1<sup>Hi</sup> subgroup had the lowest FEV1/FVC% and histamine concentration required to cause a 20% decline in FEV1. After 4 weeks of ICS treatment, the MCP1 levels in induced sputum and serum were significantly reduced. <b><i>Conclusions:</i></b> The MCP1 level in induced sputum and serum increased in patients with asthma but decreased after ICS treatment. The Th2<sup>Low</sup> MCP1<sup>Hi</sup> subgroup had the worst lung function and highest airway hyperresponsiveness. The combination of MCP1 level in induced sputum and Th2 inflammation defines a new phenotype that can be used to predict lung function and treatment response in patients with asthma.
DOI: 10.25345/c5pr7mv70
title: MassIVE Reanalysis RMSV000000354.4931 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, ANO6 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5k35mf5d
title: MassIVE Reanalysis RMSV000000354.4914 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, NDUFS7 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5fb4wn2r
title: MassIVE Reanalysis RMSV000000354.4887 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, PRDX5 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.48370/ofd/kby3jf
title: Phlebia tremellosa (Schrad.: Fr.) Nakasone Burds., 529

description: Fungarium Makromycetes
DOI: 10.48370/ofd/etq0jj/fkdnfj
title: Opiętek brzozowy (Agrilus betuleti).JPG

description: :unav
DOI: 10.48370/ofd/etq0jj
title: Opiętek brzozowy (Agrilus betuleti (Ratzeburg, 1837), C-338

description: Coleoptera collection
DOI: 10.25345/c59k45t9v
title: MassIVE Reanalysis RMSV000000354.4932 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, STK35 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c55t3g14n
title: MassIVE Reanalysis RMSV000000354.4925 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, C1orf213 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.48370/ofd/ouax6e
title: Phlebia tremellosa (Schrad.: Fr.) Nakasone Burds., 648

description: Fungarium Makromycetes
DOI: 10.5281/zenodo.6239186
title: AnimalTraits

description: AnimalTraits: a curated animal trait database for body mass, metabolic rate and brain size. This repository contains the animal traits database in CSV format (observations.csv) and Excel format (observations.xlsx), column documentation in CSV format (column-documentation.csv) and a Zip file containing raw data, scripts to compile the database and source for the website (https://animaltraits.org/).
DOI: 10.25345/c5222r70t
title: MassIVE Reanalysis RMSV000000354.4930 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, TMEM146 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.48370/ofd/f9n8vw
title: Phlebia tremellosa (Schrad.: Fr.) Nakasone Burds., 1000

description: Fungarium Makromycetes
DOI: 10.6084/m9.figshare.19221180
title: CIMT_Data

description: This dataset is from the Metaregression analysis done on CIMT values from different WHO regions as a predictor of coronary heart disease.
DOI: 10.6084/m9.figshare.19221180.v1
title: CIMT_Data

description: This dataset is from the Metaregression analysis done on CIMT values from different WHO regions as a predictor of coronary heart disease.