cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8267466
title: ELemental abundances of Planets and brown dwarfs Imaged around Stars (ELPIS): I. Potential Metal Enrichment of the Exoplanet AF Lep b and a Novel Retrieval Approach for Cloudy Self-luminous Atmospheres

description: This dataset contains materials presented in the paper ``ELemental abundances of Planets and brown dwarfs Imaged around Stars (ELPIS): I. Potential Metal Enrichment of the Exoplanet AF Lep b and a Novel Retrieval Approach for Cloudy Self-luminous Atmospheres'' (Zhang et al. 2023) for publication by Astronomical Journal. Please cite this paper and the Zenodo repository if these data are used in your work. A readme file <strong>README_ELPIS_AFLep.dat</strong> describes the content of the entire dataset. Description of other files: <strong>tull_spectrum_AF_Lep_A.zip</strong>: Tull spectrum of the host star AF Lep A (Section 2) <strong>stellar_parameters_AF_Lep_A.zip</strong>: Stellar parameters of AF Lep A inferred by isochrones (Section 3) <strong>orbit_analysis_AF_Lep_b.zip</strong>: Orbit analysis of the exoplanet AF Lep b (Section 4) <strong>RCE_dlnT_dlnP_forward_models.zip</strong>: The radiave-convective equilibrium (dlnT/dlnP) profiles of several sets of forward models (shown in Figure 5 and Section 6.2) <strong>mini_grid_emission_spectra.zip</strong>: A mini-grid of modeled emission spectroscopy (Figure 6 and Section 6.4) <strong>fitted_TP_profiles.zip</strong>: Fitted T-P profiles from multiple retrieval runs (Section 7) <strong>fitted_model_spectra.zip</strong>: Fitted model spectra from multiple retrieval runs (Section 7) <strong>retrieval_parameter_posteriors.zip</strong>: Parameter posteriors from multiple retrieval runs (Section 7).
DOI: 10.5281/zenodo.8267465
title: ELemental abundances of Planets and brown dwarfs Imaged around Stars (ELPIS): I. Potential Metal Enrichment of the Exoplanet AF Lep b and a Novel Retrieval Approach for Cloudy Self-luminous Atmospheres

description: This dataset contains materials presented in the paper ``ELemental abundances of Planets and brown dwarfs Imaged around Stars (ELPIS): I. Potential Metal Enrichment of the Exoplanet AF Lep b and a Novel Retrieval Approach for Cloudy Self-luminous Atmospheres'' (Zhang et al. 2023) for publication by Astronomical Journal. Please cite this paper and the Zenodo repository if these data are used in your work. A readme file <strong>README_ELPIS_AFLep.dat</strong> describes the content of the entire dataset. Description of other files: <strong>tull_spectrum_AF_Lep_A.zip</strong>: Tull spectrum of the host star AF Lep A (Section 2) <strong>stellar_parameters_AF_Lep_A.zip</strong>: Stellar parameters of AF Lep A inferred by isochrones (Section 3) <strong>orbit_analysis_AF_Lep_b.zip</strong>: Orbit analysis of the exoplanet AF Lep b (Section 4) <strong>RCE_dlnT_dlnP_forward_models.zip</strong>: The radiave-convective equilibrium (dlnT/dlnP) profiles of several sets of forward models (shown in Figure 5 and Section 6.2) <strong>mini_grid_emission_spectra.zip</strong>: A mini-grid of modeled emission spectroscopy (Figure 6 and Section 6.4) <strong>fitted_TP_profiles.zip</strong>: Fitted T-P profiles from multiple retrieval runs (Section 7) <strong>fitted_model_spectra.zip</strong>: Fitted model spectra from multiple retrieval runs (Section 7) <strong>retrieval_parameter_posteriors.zip</strong>: Parameter posteriors from multiple retrieval runs (Section 7).
DOI: 10.6084/m9.figshare.24066360
title: EatA IgG.csv

description: Serum IgG responses to EatA
DOI: 10.6084/m9.figshare.24066360.v1
title: EatA IgG.csv

description: Serum IgG responses to EatA
DOI: 10.34740/kaggle/dsv/6395601
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.34770/nh4z-kh27
title: Reduced Physics Model of the Tokamak Scrape-off-Layer for Pulse Design

description: The dynamic interplay between the core and the edge plasma has important consequences in the confinement and heating of fusion plasma. The transport of the Scrape-Off-Layer (SOL) plasma imposes boundary conditions on the core plasma, and neutral transport through the SOL influences the core plasma sourcing. In order to better study these effects in a self-consistent, time-dependent fashion with reasonable turn-around time, a reduced model is needed. In this paper we introduce the SOL Box Model, a reduced SOL model that calculates the plasma temperature and density in the SOL given the core-to-edge particle and power fluxes and recycling coefficients. The analytic nature of the Box Model allows one to readily incorporate SOL physics in time-dependent transport solvers for pulse design applications in the control room. Here we demonstrate such a coupling with the core transport solver TRANSP and compare the results with density and temperature measurements, obtained through Thomson scattering and Langmuir probes, of an NSTX discharge. Implications for future interpretive and predictive simulations are discussed.
DOI: 10.25919/a0yb-5t20
title: Parkes observations for project P1178 semester 2023APRS_05

description: We are actively developing a new version of the ATNF pulsar catalogue. In the paper describing the new catalogue we wish to take the opportunity to publish important pulsar parameters that have, to-date, not been published. The fundamental property of a pulsar is its pulse period and yet we have identified a large number of pulsars that do not having a measured spin-down rate and hence we do not know their evolutionary state, nor have good positions or knowledge of whether they are in a binary system. We have therefore selected 53 pulsars with the goal of measuring their spin-down rates. During this project we will also develop an automated pulsar-fold-mode online processing pipeline that includes online RFI mitigation. This pipeline will be made available as an ATNF service for other users.
DOI: 10.34770/bm4s-t361
title: 3D full wave fast wave modeling with realistic HHFW antenna geometry and SOL plasma in NSTX-U

description: Data for "3D full wave fast wave modeling with realistic HHFW antenna geometry and SOL plasma in NSTX-U"
DOI: 10.5281/zenodo.8306040
title: Dataset title: Two-minute averaged net community production in seawater estimated on the Palmer LTER Cruises along the western Antarctic Peninsula (WAP), years 2012 - 2016

description: During the annual Palmer LTER cruises in the austral summer of 2012 - 2016, seawater O2/Ar ratios were measured underway from the ship's flow-through seawater system. High-resolution net community production (NCP) in units of mmol O2 m-2 day-1 was derived from delta O2/Ar and National Centers for Environmental Prediction reanalysis winds. This two-minute resolution, quality-checked NCP product was calculated from a dataset containing raw O2 and Ar gas ratios in seawater recorded during the cruise using an equilibrator inlet mass spectrometer (EIMS) (Cassar et al., 2009). The EIMS was connected to the ship’s underway water supply and measured O2 and Ar gas ratios. Data were collected continuously whilst the underway water supply was running. Data were saved continuously onto a desktop computer as well as the expedition data storage, and backed-up every 24 hours onto a USB hard drive.
description: US National Science Foundation Grant: OPP-1643534
DOI: 10.5281/zenodo.8306041
title: Dataset title: Two-minute averaged net community production in seawater estimated on the Palmer LTER Cruises along the western Antarctic Peninsula (WAP), years 2012 - 2016

description: During the annual Palmer LTER cruises in the austral summer of 2012 - 2016, seawater O2/Ar ratios were measured underway from the ship's flow-through seawater system. High-resolution net community production (NCP) in units of mmol O2 m-2 day-1 was derived from delta O2/Ar and National Centers for Environmental Prediction reanalysis winds. This two-minute resolution, quality-checked NCP product was calculated from a dataset containing raw O2 and Ar gas ratios in seawater recorded during the cruise using an equilibrator inlet mass spectrometer (EIMS) (Cassar et al., 2009). The EIMS was connected to the ship’s underway water supply and measured O2 and Ar gas ratios. Data were collected continuously whilst the underway water supply was running. Data were saved continuously onto a desktop computer as well as the expedition data storage, and backed-up every 24 hours onto a USB hard drive.
description: US National Science Foundation Grant: OPP-1643534
DOI: 10.5281/zenodo.8306079
title: Dataset title: Two-minute averaged net community production in seawater estimated on the Palmer LTER Cruises along the western Antarctic Peninsula (WAP), years 2012 - 2016

description: During the annual Palmer LTER cruises in the austral summer of 2012 - 2016, seawater O2/Ar ratios were measured underway from the ship's flow-through seawater system. High-resolution net community production (NCP) in units of mmol O2 m-2 day-1 was derived from delta O2/Ar and National Centers for Environmental Prediction reanalysis winds. This two-minute resolution, quality-checked NCP product was calculated from a dataset containing raw O2 and Ar gas ratios in seawater recorded during the cruise using an equilibrator inlet mass spectrometer (EIMS) (Cassar et al., 2009). The EIMS was connected to the ship’s underway water supply and measured O2 and Ar gas ratios. Data were collected continuously whilst the underway water supply was running. Data were saved continuously onto a desktop computer as well as the expedition data storage, and backed-up every 24 hours onto a USB hard drive.
description: US National Science Foundation Grant: OPP-1643534
DOI: 10.6084/m9.figshare.24066357
title: EatA IgA.csv

description: serum IgA responses to EatA
DOI: 10.6084/m9.figshare.24066357.v1
title: EatA IgA.csv

description: serum IgA responses to EatA
DOI: 10.6084/m9.figshare.22492423
title: Oncidium hybridum

description: <em>Oncidium</em>, an important tropical orchid, has high ornamental value due to its specific color and occupies an important market position for the worldwide flower. Transcriptome analysis of flower and leaf color formation provides new sources for producing novel <em>Oncidium hybridum </em>cultivars. We sequenced 12 samples of flowers (yellow and white) and leaves (striped and normal) of <em>O. hybridum</em> and assembled 381,136 and 453,566 unigene sequences from RNA-seq data, respectively. Among unigenes, 662 and 1,324 differentially expressed genes were identified in flower and leaf samples, respectively. Gene ontology and pathway enrichment showed that secondary metabolite biosynthetic pathways were responsible for flower and leaf color formation. It was determined that <em>UGT75C1</em>, <em>E2.4.1.115</em>, <em>CCD7</em>, <em>E2.1.1.76</em>, and <em>CCoAOMT</em> are involved in regulating flower color, and <em>UGT75C1</em>, <em>LHCB</em>, <em>UGT</em>, <em>RP-L18Ae</em>, and A<em>BCB1</em> play crucial roles in regulating leaf color. Kyoto Encyclopedia of Genes and Genomes analysis revealed that <em>UGT75C1</em> was significantly enriched in the anthocyanin biosynthetic pathway, showing effects on flower and leaf colors. This study was the first detailed analysis of the molecular mechanisms of <em>O. hybridum </em>flower and leaf colors, and the results advanced the understanding of the genetic basis of flower and leaf colors; they also provided additional support for the improving commercial value and producing novel cultivars of <em>O. hybridum</em>.
DOI: 10.6084/m9.figshare.22492423.v2
title: Oncidium hybridum

description: <em>Oncidium</em>, an important tropical orchid, has high ornamental value due to its specific color and occupies an important market position for the worldwide flower. Transcriptome analysis of flower and leaf color formation provides new sources for producing novel <em>Oncidium hybridum </em>cultivars. We sequenced 12 samples of flowers (yellow and white) and leaves (striped and normal) of <em>O. hybridum</em> and assembled 381,136 and 453,566 unigene sequences from RNA-seq data, respectively. Among unigenes, 662 and 1,324 differentially expressed genes were identified in flower and leaf samples, respectively. Gene ontology and pathway enrichment showed that secondary metabolite biosynthetic pathways were responsible for flower and leaf color formation. It was determined that <em>UGT75C1</em>, <em>E2.4.1.115</em>, <em>CCD7</em>, <em>E2.1.1.76</em>, and <em>CCoAOMT</em> are involved in regulating flower color, and <em>UGT75C1</em>, <em>LHCB</em>, <em>UGT</em>, <em>RP-L18Ae</em>, and A<em>BCB1</em> play crucial roles in regulating leaf color. Kyoto Encyclopedia of Genes and Genomes analysis revealed that <em>UGT75C1</em> was significantly enriched in the anthocyanin biosynthetic pathway, showing effects on flower and leaf colors. This study was the first detailed analysis of the molecular mechanisms of <em>O. hybridum </em>flower and leaf colors, and the results advanced the understanding of the genetic basis of flower and leaf colors; they also provided additional support for the improving commercial value and producing novel cultivars of <em>O. hybridum</em>.
DOI: 10.6084/m9.figshare.22492423.v1
title: Oncidium hybridum

description: <em>Oncidium</em>, an important tropical orchid, has high ornamental value due to its specific color and occupies an important market position for the worldwide flower. Transcriptome analysis of flower and leaf color formation provides new sources for producing novel <em>Oncidium hybridum </em>cultivars. We sequenced 12 samples of flowers (yellow and white) and leaves (striped and normal) of <em>O. hybridum</em> and assembled 381,136 and 453,566 unigene sequences from RNA-seq data, respectively. Among unigenes, 662 and 1,324 differentially expressed genes were identified in flower and leaf samples, respectively. Gene ontology and pathway enrichment showed that secondary metabolite biosynthetic pathways were responsible for flower and leaf color formation. It was determined that <em>UGT75C1</em>, <em>E2.4.1.115</em>, <em>CCD7</em>, <em>E2.1.1.76</em>, and <em>CCoAOMT</em> are involved in regulating flower color, and <em>UGT75C1</em>, <em>LHCB</em>, <em>UGT</em>, <em>RP-L18Ae</em>, and A<em>BCB1</em> play crucial roles in regulating leaf color. Kyoto Encyclopedia of Genes and Genomes analysis revealed that <em>UGT75C1</em> was significantly enriched in the anthocyanin biosynthetic pathway, showing effects on flower and leaf colors. This study was the first detailed analysis of the molecular mechanisms of <em>O. hybridum </em>flower and leaf colors, and the results advanced the understanding of the genetic basis of flower and leaf colors; they also provided additional support for the improving commercial value and producing novel cultivars of <em>O. hybridum</em>.
DOI: 10.34770/stwa-qh32
title: Self-consistent simulation of compressional Alfvén eigenmodes excitation and runaway electron diffusion in tokamak disruptions

description: The data set consists of the figures in a manuscript titled "Self-consistent simulation of compressional Alfvén eigenmodes excitation and runaway electron diffusion in tokamak disruptions", and plotting script used for figure generation. There are 4 figures.
DOI: 10.6084/m9.figshare.21844230
title: Ratcliffe et al. 2023 - Extreme Precipitation Promotes Invasion in Managed Grasslands

description: This repository contains data and replication code for "Extreme Precipitation Promotes Invasion in Managed Grasslands" by Ratcliffe, Hugh; Kendig, Amy; Ahlering, Marissa; Carlson, Daren; Vacek, Sara; Dee, Laura. <br> The included data is a subset of the Grassland Monitoring Team dataset, collected from 2008 - 2019. These data were collected as part of a collaborative project which included the Minnesota Department of Nature Resources, the Nature Conservancy, and the US Fish and Wildlife Service. <br> Data are included for public record and are available for public use.<br> <strong>Repository Contents</strong><br> 1. <strong>GMT Extremes Analysis.Rmd</strong> - Contains all R code used to implement regressions and replicate results in manuscript. Instructions included within. <br> 2. <strong>Ratcliffe et. al 2023_GMT Data.csv</strong> - Includes all data necessary to replicate results from scratch. <br> 3. <strong>Ratcliffe et al. 2023_GMT Metadata.xlsx -</strong> Accompanying metadata and variable definitions for all variables found in Ratcliffe et. 2023_GMT Data.csv. <br> 4. <strong>2013_dnr_plant_status.xls</strong> - Supplemental file from the Minnesota Department of Natural Resources used to differentiate native versus invasive species. <br> 5. <strong>2013_dnr_plant_checklist.xls</strong> - Supplemental file from the Minnesota Department of Natural Resources used to identify indicator species. <br> 6. <strong>Vacek 2012 - GMT Protocols</strong> - Protocol used for the collection of the vegetation data. <br> Vacek, S., M. Cornett, D. Carlson, and M. Ahlering. 2016. Grassland Monitoring Team Standardized Monitoring Protocol. https://ecos.fws.gov/ServCat/Reference/Profile/26773 <br> For questions or use please contact the owner of this figshare repository, Hugh Ratcliffe, at hugh.ratcliffe@gmail.com.
DOI: 10.5281/zenodo.7573431
title: Supplementary material for "Including filter-feeding gelatinous macrozooplankton in a global marine biogeochemical model: model-data comparison and impact on the ocean carbon cycle"

description: Supplementary material for "Including filter-feeding gelatinous macrozooplankton in a global marine biogeochemical model: model-data comparison and impact on the ocean carbon cycle". Clerc, C., Bopp, L., Benedetti, F., Vogt, M., and Aumont, O.: Including filter-feeding gelatinous macrozooplankton in a global marine biogeochemical model: model-data comparison and impact on the ocean carbon cycle, EGUsphere [preprint], https://doi.org/10.5194/egusphere-2022-1282, 2022. Three directories can be downloaded: <strong>DataOBS</strong> : AtlantECO [WP2] – Traditional microscopy dataset – Thaliacea (Salpida+Doliolida+Pyromosomatida) abundance and biomass concentration data, presented in Clerc et al. (2022). <strong>FigPaper </strong>: Source code and .nc files for the figures presented in Clerc et al. (2022) (https://doi.org/10.5194/egusphere-2022-1282). <strong>MY_SRC_PISCES_NEMO_3.6 :</strong> Additional fortran routines for the compilation of PISCES-FFGM, the model developed for Clerc et al. (2022), from NEMO-3.6 (https://www.nemo-ocean.eu)
DOI: 10.5281/zenodo.7573432
title: Supplementary material for "Including filter-feeding gelatinous macrozooplankton in a global marine biogeochemical model: model-data comparison and impact on the ocean carbon cycle"

description: Supplementary material for "Including filter-feeding gelatinous macrozooplankton in a global marine biogeochemical model: model-data comparison and impact on the ocean carbon cycle". Clerc, C., Bopp, L., Benedetti, F., Vogt, M., and Aumont, O.: Including filter-feeding gelatinous macrozooplankton in a global marine biogeochemical model: model-data comparison and impact on the ocean carbon cycle, EGUsphere [preprint], https://doi.org/10.5194/egusphere-2022-1282, 2022. Three directories can be downloaded: <strong>DataOBS</strong> : AtlantECO [WP2] – Traditional microscopy dataset – Thaliacea (Salpida+Doliolida+Pyromosomatida) abundance and biomass concentration data, presented in Clerc et al. (2022). <strong>FigPaper </strong>: Source code and .nc files for the figures presented in Clerc et al. (2022) (https://doi.org/10.5194/egusphere-2022-1282). <strong>MY_SRC_PISCES_NEMO_3.6 :</strong> Additional fortran routines for the compilation of PISCES-FFGM, the model developed for Clerc et al. (2022), from NEMO-3.6 (https://www.nemo-ocean.eu)
DOI: 10.6084/m9.figshare.21824733
title: Nodelist and Edgelists - field network analysis (Esparza & Smith, 2023: Ecosphere)

description: Data used in the analyses for Esparza & Smith, 2023 published in Ecosphere in the Eco-Education track.<br>The file entitled "node list" contains information on each of the nodes (people) in the field course social system across all timepoints (early, middle, late). This dataset is anonymized, with each node assigned a unique ID in the first column. Additionally, this dataset includes information on the role of each node (e.g., student, family, instructor) and their community type (e.g., personal, professional).<br>The files entitled "edge list" (early, middle, late) each include information on who sent ties to whom and how frequently the interaction(s) occurred within the respective time point.<br>These data were collected using name generators, which typically include two types of questions that probe the names of those with whom an individual interacted (<i>i.e., name generators</i>) and information on those an individual interacted with (<i>i.e., name interpreters</i>). In this study, students completed a name generator survey at weeks six, eleven, and fifteen of the 15-week semester (i.e., timepoint) in a field course with an embedded course-based field research project. See Esparza and Smith (In review) Materials and Methods for more information.<br>The files entitled "node list metadata" and "edge list metadata" include detailed information on the data included in the "node list" and "edge list" CSV. files. These files include the ranges/categories and a description of each variable included in the datasets.All data are anonymized so as to protect the identity and privacy of all research participants and their listed contacts. The research has been approved by the Cornell University Institutional Review Board under the exempt protocol #2001009364.
DOI: 10.6084/m9.figshare.21824733.v1
title: Nodelist and Edgelists - field network analysis (Esparza & Smith, Ecosphere)

description: Data used in the analyses for Esparza & Smith (In review) submitted to Ecosphere in the Eco-Education track. <br> The file entitled "node list" contains information on each of the nodes (people) in the field course social system across all timepoints (early, middle, late). This dataset is anonymized, with each node assigned a unique ID in the first column. Additionally, this dataset includes information on the role of each node (e.g., student, family, instructor) and their community type (e.g., personal, professional). <br> The files entitled "edge list" (early, middle, late) each include information on who sent ties to whom and how frequently the interaction(s) occurred within the respective timepoint. <br> These data were collected using name generators, which typically include two types of questions that probe the names of those with whom an individual interacted (<em>i.e., name generators</em>) and information on those an individual interacted with (<em>i.e., name interpreters</em>). In this study, students completed a name generator survey at weeks six, eleven, and fifteen of the 15-week semester (i.e., timepoint) in a field course with an embedded course-based field research project. See Esparza and Smith (In review) Materials and Methods for more information. <br> The files entitled "node list metadata" and "edge list metadata" include detailed information on the data included in the "node list" and "edge list" csv. files. These files includes the ranges/categories and a description of each variable included in the datasets. All data are anonymized so as to protect the identity and privacy of all research participants and their listed contacts. The research has been approved by the Cornell University Institutional Review Board under the exempt protocol #2001009364.