cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/6r8nv-cqb04
title: JV9298

description: DotF-sfGFP DotB E191K
description: <strong>Tilt Series Date:</strong> 2019-10-14</p>
<strong>Data Taken By:</strong> Yuxi Liu</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-54.0°, 54.0°), step: 3°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -5.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> PNCC Krios 3</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain from Joe Vogel</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Late exponential/Early stationary</p>
<strong>Sample Preparation:</strong> Quantifoil R2/2 copper. Vitrobot 22 deg C, 100% humidity, 4uL of 2X concentrated culture, blot force 6, blot time 3 sec, drain time 1 sec, wait time 0 sec.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2019-10-14-54/rawdata/</p>JV9298_81_D4.mrc,  Tilt Series (Pixel Size 0.1323 nm), 14.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        JV9298_81_D4_full.rec,  Reconstruction (Pixel Size 1.0584 nm), 737.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/nqk9w-xew60
title: Legionella_delta-lspHIJK

description: Legionella pneumophila Philadelphia-1_Lp02. Lacks all the T2SS minor pseudopilins.
description: <strong>Tilt Series Date:</strong> 2019-05-16</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-45.0°, 45.0°), step: 3.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -7.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent by Nicholas Cianciotto, Northwestern University. Data collected and processed by Debnath Ghosal.</p>
<strong>Sample Preparation:</strong> 6 grids were frozen for this strain (2x concentrated culture); Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 4.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-05-16-10/rawdata/</p>DG7_20190516_tomo0005.mrc,  Tilt Series (Pixel Size 0.26 nm), 882.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-05-16-10/rawdata/DG7_20190516_tomo0005.mrc"
        > <i class="download icon"></i> Download </a></p>

        DG7_20190516_tomo0005_full.rec,  Reconstruction (Pixel Size 1.04 nm), 445.4 MB  
        
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DOI: 10.22002/6akn1-gxw38
title: Legionella_JV9246

description: Legionella_JV9246: DotF-sfGFP fusion to the wild-type gene on the chromosome (thyA) and ΔdotO.
description: <strong>Tilt Series Date:</strong> 2019-05-28</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -4.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Joseph P. Vogel, Washington University School of Medicine. Data collected by Debnath Ghosal and Yuxi Liu.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 3 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-05-28-112/rawdata/</p>JV9246_area1_tomo0112.mrc,  Tilt Series (Pixel Size 0.26 nm), 1.2 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        JV9246_area1_tomo0112_part41_4.rec,  Reconstruction (Pixel Size 1.04 nm), 445.4 MB  
        
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DOI: 10.22002/3h7wz-1nb37
title: Pseudomonas aeruinosa

description: This is from the transposon mutant library of Pseudomonas aeruginosa PAO1. The aim is to check for the presence of PL sub complexes in the absence of FliF protein.
description: <strong>Tilt Series Date:</strong> 2018-10-03</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 2°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -9.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Serial EM</p>
<strong>Collaborators and Roles:</strong> I obtained these cells from Dianne Newmann lab (Shannon Park)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The cells were grown overnight at 37 C in LB with 100 ug/ml gentamicin</p>
<strong>Sample Preparation:</strong> Samples from the overnight culture were used to prepare the grids.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-10-03-31/rawdata/</p>Test_Pseudomonas_dfliF_122_fix.mrc,  Tilt Series (Pixel Size 0.37 nm), 1.4 GB  
        
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        Test_Pseudomonas_dfliF_122_fix_part51_12.rec,  Reconstruction (Pixel Size 1.48 nm), 444.5 MB  
        
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DOI: 10.15468/dl.u2cun5
title: Occurrence Download

description: A dataset containing 528 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dalbergia obovata E.Mey."
 ]
}

 The dataset includes 528 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022654-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.26xya3
title: Occurrence Download

description: A dataset containing 604481 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-37.07678 68.47082,18.73073 66.92907,18.80911 66.9552,99.23207 68.47082,100.14129 84.73555,27.05396 84.72571,-37.07678 83.46513,-37.07678 68.47082))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta",
 "Year 2015-2025"
 ]
}

 The dataset includes 604481 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000027-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xjsxh6
title: Occurrence Download

description: A dataset containing 1906 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Quercus rubra",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1906 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000095-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25403/upresearchdata.29913581
title: Type and frequency of injuries documented for children managed with a history of sexual assault in the emergency departments

description: Paediatric sexual assault is an increasing social problem. It is estimated that globally, every year, one out of five girls and one out of 13 boys are sexually assaulted. Worldwide, 150 million female children and 73 million male children younger than the age of 18 years are victims of sexual assault, and more than one billion children suffer some form of violence each year around the world. The incidence of children sexually assaulted in South Africa is alarming, and the lack of research about the type and frequency of injuries needs to be thoroughly researched and explored. The type and frequency of injuries found in sexual assaults are not well known, especially not for paediatric sexual assaults. The aim of the study was to determine the type and frequency of injuries documented for children with a history of sexual assault managed in emergency departments. A quantitative, descriptive, retrospective design was utilised. Retrospective data collection from documentation in the patient files was done. The total sample size was 91. Retrospective data collection from documentation in the patient files was done.
DOI: 10.25403/upresearchdata.29913581.v1
title: Type and frequency of injuries documented for children managed with a history of sexual assault in the emergency departments

description: Paediatric sexual assault is an increasing social problem. It is estimated that globally, every year, one out of five girls and one out of 13 boys are sexually assaulted. Worldwide, 150 million female children and 73 million male children younger than the age of 18 years are victims of sexual assault, and more than one billion children suffer some form of violence each year around the world. The incidence of children sexually assaulted in South Africa is alarming, and the lack of research about the type and frequency of injuries needs to be thoroughly researched and explored. The type and frequency of injuries found in sexual assaults are not well known, especially not for paediatric sexual assaults. The aim of the study was to determine the type and frequency of injuries documented for children with a history of sexual assault managed in emergency departments. A quantitative, descriptive, retrospective design was utilised. Retrospective data collection from documentation in the patient files was done. The total sample size was 91. Retrospective data collection from documentation in the patient files was done.
DOI: 10.5281/zenodo.15355927
title: Data set for "Enhancing interlayer exciton dynamics by coupling with monolithic cavities via the field-induced Stark effect"

description: Data accompanying the paper "Enhancing interlayer exciton dynamics by coupling with monolithic cavities via the field-induced Stark effect".
DOI: 10.5281/zenodo.15355928
title: Data set for "Enhancing interlayer exciton dynamics by coupling with monolithic cavities via the field-induced Stark effect"

description: Data accompanying the paper "Enhancing interlayer exciton dynamics by coupling with monolithic cavities via the field-induced Stark effect".
DOI: 10.15468/dl.cevqys
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Quercus ilex",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000039-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29995783
title: <b>Phenological changes mediated the effects of nitrogen enrichment on reproduction in an alpine meadow on the Tibetan Plateau</b>

description: Nitrogen (N) enrichment and precipitation regimes changes may influence plant growth by modifying soil nutrient and water availability, yet they could also shift plant phenology and impact reproductive output and success. However, the responses of plant phenology to N enrichment and precipitation changes, as well as their reproductive consequences, remain poorly understood.Based on a field experiment with N addition and altered precipitation conducted in an alpine meadow on the eastern Tibetan Plateau since 2020, we explored their effects on plant reproductive phenology and reproduction from 2023 to 2024.We found that N addition delayed the reproductive period and decreased both flower and fruit production in alpine plants. Notably, the interactive effects of N and precipitation addition significantly enhanced fruit set. Phenological shifts mediated plant reproductive responses to N addition and altered precipitation. Specifically, while N addition directly decreased flower production, it indirectly increased fruit set via phenological changes.These findings demonstrate the critical regulatory role of plant phenology in the response of alpine plant reproductive success to N enrichment and precipitation changes. However, although delayed reproductive phenology enhances fruit set in alpine plants, its capacity to compensate for N-induced reproductive losses remains severely limited.
DOI: 10.6084/m9.figshare.29995783.v1
title: <b>Phenological changes mediated the effects of nitrogen enrichment on reproduction in an alpine meadow on the Tibetan Plateau</b>

description: Nitrogen (N) enrichment and precipitation regimes changes may influence plant growth by modifying soil nutrient and water availability, yet they could also shift plant phenology and impact reproductive output and success. However, the responses of plant phenology to N enrichment and precipitation changes, as well as their reproductive consequences, remain poorly understood.Based on a field experiment with N addition and altered precipitation conducted in an alpine meadow on the eastern Tibetan Plateau since 2020, we explored their effects on plant reproductive phenology and reproduction from 2023 to 2024.We found that N addition delayed the reproductive period and decreased both flower and fruit production in alpine plants. Notably, the interactive effects of N and precipitation addition significantly enhanced fruit set. Phenological shifts mediated plant reproductive responses to N addition and altered precipitation. Specifically, while N addition directly decreased flower production, it indirectly increased fruit set via phenological changes.These findings demonstrate the critical regulatory role of plant phenology in the response of alpine plant reproductive success to N enrichment and precipitation changes. However, although delayed reproductive phenology enhances fruit set in alpine plants, its capacity to compensate for N-induced reproductive losses remains severely limited.
DOI: 10.15468/dl.q26y9s
title: Occurrence Download

description: A dataset containing 3688 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aspidosperma polyneuron)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3688 records from 142 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000037-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w5uqkh
title: Occurrence Download

description: A dataset containing 156113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Halophila ovalis"
 ]
}

 The dataset includes 156113 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050115-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mzxhyq
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Styphnolobium japonicum",
 "Country is Türkiye",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050182-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yb4zx6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alectoris graeca",
 "Country is Chinese Taipei",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050180-250811113504898/datasets/export for details.
DOI: 10.15468/dl.dn4hgh
title: Occurrence Download

description: A dataset containing 63001 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Lythrum portula"
 ]
}

 The dataset includes 63001 records from 846 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050111-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/es5qw-ghx43
title: Xac WT pBRaφ pBRR MCS5 GFP

description: Xanthomonas citri   pv citri 306
description: <strong>Tilt Series Date:</strong> 2017-12-15</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Unspecified</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -7.0 μm,  magnification: 27500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Chuck Farah lab made the strain, data collected by Debnath Ghosal.</p>
<strong>Sample Preparation:</strong> Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 6 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-12-15-39/rawdata/</p>XanGFP15122017a0035.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        XanGFP15122017a0035_part61_16.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/6gz6q-8xz30
title: H. pylori 26695 WT / AGS

description: Grid box YWC243
description: <strong>Tilt Series Date:</strong> 2017-02-27</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Helicobacter pylori</p>
<strong>Strain:</strong> 26695</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain and sample prepared by Carrie Shaffer</p>
<strong>Sample Preparation:</strong> Vitrobot settings: 100% humidity, 37 C, 3µl BSA treated 10 nm gold (100 ml gold+ 25 ml 10% BSA x4, resuspend in 30 ul). Blot for 5 sec (1 sec longer than usual to remove more solution). Ethane/propane mix.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-02-27-53/rawdata/</p>20170227_YWC243_20029.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
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        20170227_YWC243_20029_part61_6.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
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