cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7302/jawv-db54
title: Dogon Bunoge Boudou Audio Files

description: Bunoge  is  a  Dogon  language  spoken  in  Boudou  and  two  neighboring  villages  in  central  Mali. These  texts  were  recorded  in the  original Boudou  village  (perched  on  a  peak)  in  2015.  The content of the texts is: 2015-01 greetings and initial conversations; 2015-02 history of Boudou, part 1; 2015-03 history of Boudou, part 2; 2015-04 farming methods; 2015-05 carts and gardening; 2015-06 farming; 2015-07 wells, road, and school; 2015-08 tale; 2015-09 tale. Heath,  A  grammar  of  Bunoge,  is  electronically  published (2017) at  Language  Description Heritage Library http://ldh.clld.org/2017/03/01/escidoc2417511/ with backup copy at Deep Blue documents. http://hdl.handle.net/2027.42/139023 DOI is 10.17617/2.2417511 At  the  end  of  the  grammar  are  formatted  transcriptions/translations  of  2015-02, 2015-03, 2015-05, 2015-08, and 2015-09. The remaining texts (2015-01, 2015-04, 2015-06, and 2015-07) have not been transcribed as of  May  2018.  I  grant  permission  to  other  scholars  to  transcribe,  translate,  and/or  analyse  these texts.
description: The audio recordings were made using a microphone connected to a Macintosh computer using Quicktime .mov format. Copies of these files were made in .wav format for preservation purposes. Both .mov and .wav files are available for download.
DOI: 10.7302/z2zw1j47
title: Stewardship Gap Project Bibliography Data

description: The data were collected as part of the Stewardship Gap project, an 18-month study to investigate how research data and creative outputs supported by public or non-profit funding in the United States are being stewarded. These data were collected as part of a literature search of sources about research data stewardship and relate most directly to work describing “What We Know About the Stewardship Gap.” In this work, we categorized “gaps” in stewardship identified in the literature, how the gaps were related to one another, and efforts to measure and develop metrics for the gaps.
description: The data represent a synthesis and categorization of literature about research data stewardship. During the course of a literature review, we identified and categorized portions of documents that spoke to the presence of a “stewardship gap,” the measurement of components of a stewardship gap, or metrics designed to measure a stewardship gap. We also categorized statements that identified potential causes of different components of a stewardship gap. Data were recorded using a combination of Excel spreadsheets, the application Workflowy, and a MySQL database associated with a Drupal 7 website.
DOI: 10.7302/2cdb-fm30
title: Central Mali villages and people documentaries

description: Documentary-style videos about villages and social relations in Dogon country. Documentaries are given in two or three video formats each. 
description: Video shot during field work in Central Mali and edited into documentaries.
DOI: 10.7302/tzps-y259
title: Central Mali oils soaps and soda-ash documentaries

description: Videos done in the course of linguistic fieldwork in Central Mali. They are presented here in two or three video formats. The videos show how Dogon villagers press oil from nuts and fruit pits, make liquid soda ash (French potasse), and make soap. Some are in standard documentary form, some early ones ("compendiums") are sequences of brief clips. Most were made in Beni village or in the Douentza area.
description: shooting video footage and editing into documentaries
DOI: 10.7302/z0mn-cv27
title: Core photos for core SPR-unnamed BC

description: This dataset contains the core photo for the box core SPR0901-unnamed (34.2816°N, 120.0415°W, 588 m water depth) off Southern California, retrieved in 2009.1 on R/V Sproul. The research is funded by NSF OCE-0752093.;Data citation: Hendy, I.L., Wang, Y. (2019). Core photo for SPR-unnamed [Data set]. University of Michigan Deep Blue Data Repository. https://doi.org/10.7302/z0mn-cv27
description: The box core SPR0901-unnamed only has one section. The core photo was obtained from high-resolution line scan imaging system of the LacCore Facility (National Lacustrine Core Facility) at University of Minnesota.
DOI: 10.7302/z23t9ffm
title: Student's Writing Eportfolio: "Samantha's" Capstone

description: This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication: https://doi.org/10.3998/mpub.10079890), and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a (https://doi.org/10.3998/mpub.10079890.cmp.1) to the publication.
description: This link will download a zipped folder of files created with SiteSucker, “a Macintosh application that automatically downloads websites from the Internet. It does this by asynchronously copying the site's webpages, images, PDFs, style sheets, and other files to your local hard drive, duplicating the site's directory structure” (SiteSucker Manual: https://ricks-apps.com/osx/sitesucker/archive/2.x/2.6.x/2.6/manuals/en/pgs/Overview.html]). To open the eportfolio website compressed in this zipped folder, you will need to double-click on the subfolder titledfirstnamelastname.wordpress.com (e.g., kaylacockrum.wordpress.com), and then double-click on the file titled index.html. Opening this file will launch a browser window showing the eportfolio home page, and from there you will be able to navigate the eportfolio website offline. Because this site is offline, external links to online urls will not function. (Please note that SiteSucker is not compatible with the Chrome browser, and should be opened using Firefox or Safari browsers.)
DOI: 10.7302/7zz3-jh58
title: Supplemental Data for "Enduring and sex-specific changes in hippocampal gene expression after a subchronic immune challenge"

description: The main goal of this research was to identify potential molecular pathways that contribute to memory dysregulation and decline that persists long after illness or inflammation. We have previously established a subchronic immune challenge model that results in memory impairments months after the inflammatory challenge. This project aimed to determine whether memory impairments were accompanied by transcriptional dysregulation in memory related brain region (the hippocampus). 
These data show the differential gene expression as log2fold change (and p-value) in males and females 3 months after immune challenge (Supp Tables 1 and 2); after a subsequent immune challenge (Supp Tables 3 and 4); the differential regulation of genes in males and females (Supp Table 5); genes differentially expressed in the hippocampus of males and females at baseline (Supp Table 6) and the differential regulation of those genes in males and females after immune challenge (Supp Tables 7,8).
description: Hippocampus was dissected from male and female mice 3 months after a subchronic lipopolysaccharide challenge (Tchessalova & Tronson, 2019
description: https://doi.org/10.1101/379339).
RNA isolation was conducted using Life Technologies PureLink RNA Mini kit (cat. no. 12183018A).
For detailed methods, please see https://doi.org/10.1101/566570
RNA sequencing (Illumina 4000 Hi-seq, single-end, nonstrand, read lengths 50, sequencing depth 40million reads per sample) was used.
Alignment, differential expression analysis used Tuxedo Suite software (Bowtie2 v.2.2.1, Tophat v.2.0.13, and Cufflinks v.2.2.1 ). Benjamini corrections were used to determine p-values for differentially expressed genes. 
Raw gene expression data is available from GEO (GSE126678
description: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE126678) and Sequence Read Archive (SRA) (SRP186132,BioProject number PRJNA522922
description: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA522922/ ).
DOI: 10.7302/b3mj-dz37
title: Assessing Margin-wide Rupture Behaviors along  the Cascadia Megathrust using 3-D Dynamic Rupture Simulations

description: This study used three-dimensional, dynamic earthquake simulations to investigate how stress and friction levels on the Cascadia megathrust fault influence the final earthquake size 
and coastal subsidence patterns from the 1700 A.D. earthquake. 
description: The simulations are carried out using the open-source software, SeisSol. The 3-D finite element mesh (FEM) for the Cascadia and surrounding topography/bathyemtry was 
created using Simmetrix. Results may be viewed with Paraview (.xdmf files) or if in ascii text form (.txt) with python or similar scientific scripting language. Static stress-drop is calculated from the coupling models using Poly3D, which is freely available. 
No data was collected during this study. Where appropriate, readers may refer to Table 1 
in Wang, P-L et al., (2013) for the tabulated subsidence values.
DOI: 10.7302/sww6-by11
title: Performance Summary Display Discriptions

description: We use the term “performance summary display” (PSD) to mean a kind of visualization that relates performance levels to other types of information. In the context of healthcare organizations, PSDs are intended to be communicated to a healthcare professional, team, or organization. ;Displays were identified, classified, and elements counted and coded.  The performance summary display ontology provides a set of descriptions of components of displays that have been used  ​to annotate performance feedback visualizations.
description: Analysis of performance feedback summary studies by two coders, discussed, and consensus formed.  See codebook.md for detailed description of column meanings. For more detailed explanation of methodology, see associated publication at https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7181510/.
DOI: 10.7302/z2ws8rfr
title: Literature Search Strategies for "Effectiveness of anti-osteoporotic drugs to prevent secondary fragility fractures: systematic review and meta-analysis"

description: The dataset represents the complete search strategies for all literature databases searched during the systematic review. The Endnote library that contains all citations is also included.
description: The searches were run in Ovid MEDLINE, Ovid MEDLINE In-Process & Other Non-Indexed Citations, Embase, and Cochrane Central Register of Controlled Trials on July 21, 2016. The results were imported into Endnote X6. Most duplicate citations were removed in the program through automated and manual processes.
DOI: 10.7302/rerb-bd58
title: The enhancement of coseismic slip and ground motion due to the accretionary wedge and sedimentary layer in the 2011 Tohoku-Oki earthquake

description: Low-velocity accretionary wedges and sedimentary layers overlaying continental plates are widely observed in the subduction zones where historical large earthquakes have occurred. It was observed that rupture of the 2011 Mw 9.0 Tohoku-Oki earthquake propagated to the trench with large coseismic slip on the shallow fault, but what caused the huge shallow slip remains a prominent problem.;Here we explore how the two low-velocity structures, accretionary wedge and sedimentary layer, affect the coseismic slip and near-fault ground motions during the 2011 Tohoku-Oki earthquake. Constrained by the observed seafloor deformation, we present a 2-D dynamic rupture model of the 2011 Tohoku-Oki earthquake with an accretionary wedge and a sedimentary layer. Compared to a homogeneous model with the same friction and stress parameters on the fault, we find that the co-existence of the accretionary wedge and sedimentary layer significantly enhances the shallow coseismic slip and amplifies ground accelerations near the accretionary wedge. We then investigate a plausible scenario of a smaller Tohoku-Oki earthquake when its rupture does not reach the accretionary wedge. The sedimentary layer slightly enhances the coseismic slip while the accretionary wedge has almost no influence for the smaller earthquake scenario, but both structures significantly amplify the ground accelerations on the overriding plate. ;By simulating a suite of earthquake scenarios, we suggest that the co-existence of an accretionary wedge and sedimentary layers tend to enhance coseismic slip, but the enhancement effect decreases as the up-dip limit of rupture zones terminates at a larger depth. The numerical simulations were solved using SEM2DPACK _2.3.8 (http://www.sourceforge.net/projects/sem2d/), and simulation results were visualized by Matlab. This folder includes the input files to reproduce our simulation results and plot scripts.
description: The simulations are processed using a 2D spectral element method (SEM2DPACK_2.3.8) (http://www.sourceforge.net/projects/sem2d/).
DOI: 10.7302/mcmd-v749
title: Connecting Concepts in the Brain by Mapping Cortical Representations of Semantic Relations

description: We collected hours of functional magnetic resonance imaging data from human subjects listening to natural stories. We developed a predictive model of the voxel-wise response and further applied it to thousands of new words to understand how the brain stores and connects different concepts.;This is a dataset for the paper:
Zhang, Y., Han, K., Worth, R., & Liu, Z. (2020). Connecting concepts in the brain by mapping cortical representations of semantic relations. Nature communications, 11(1), 1-13. https://doi.org/10.1038/s41467-020-15804-w. This project is also documented at https://osf.io/eq2ba/.
description: Nineteen human subjects (11 females, 8 males, age 24.4 ± 4.8, all right-handed) participated in this study. All subjects provided informed written consent according to a research protocol approved by the Institutional Review Board at Purdue University. While being scanned for fMRI, each subject was listening to several audio stories collected from The Moth Radio Hour (https://themoth.org/radio-hour) and presented through binaural MR-compatible headphones (Silent Scan Audio Systems, Avotec, Stuart, FL). A single story was presented in each fMRI session (6 m 48 s ± 1 min 58 s). For each story, two repeated sessions were performed for the same subject.
description: T1 and T2-weighted MRI and fMRI data were acquired in a 3T MRI system (Siemens, Magnetom Prisma, Germany) with a 64-channel receive-only phased-array head/neck coil. The fMRI data were acquired with 2 mm isotropic spatial resolution and 0.72 s temporal resolution by using a gradient-recalled echo-planar imaging sequence (multiband = 8, 72 interleaved axial slices, TR = 720 ms, TE = 31 ms, flip angle = 52°, field of view = 21 × 21 cm^2).
description: The MRI and fMRI data were preprocessed by using the minimal preprocessing pipeline established for the HCP (using software packages AFNI, FMRIB Software Library, and FreeSurfer pipeline). After preprocessing, the images from individual subjects were co-registered onto a common cortical surface template. Then the fMRI data were spatially smoothed by using a gaussian surface smoothing kernel with a 2 mm standard deviation.
description: To represent words as vectors, we used a pre-trained word2vec model (https://code.google.com/archive/p/word2vec/). The model was able to convert any English word to a vector embedded in a 300-dimensional semantic space. We mapped the semantic space, as modeled by word2vec, to the cortex through voxel-wise linear encoding models.
DOI: 10.7302/sp05-y333
title: Stress drop variation of deep-focus earthquakes tables

description: We intend to figure out the difference of stress drops, which is a characteristic source parameter, between shallow and deep-focus earthquakes. Significant stress drop difference may shed light on the difference of physical mechanisms of shallow and deep-focus earthquakes, which has been a elusive question. We select from deep-focus earthquakes (> 400 km) in 2000-2018 and obtain their stress drops using P and S waves. We find that stress drops of deep-focus earthquakes are about one order of magnitude higher than that of shallow earthquakes, indicating about one order of magnitude higher shear strength of shallow faults than faults in the mantle. The wide range of stress drops further suggests coexistence of phase transformation and shear-induced melting mechanisms of deep-focus earthquakes.
description: The seismograms we used were downloaded from Incorporated Research Institutions for Seismology Data Manage Center (IRIS DMC). We then used a spectral method based on empirical Green's function to obtain corner frequencies of deep-focus earthquakes using these seismograms. Finally, we computed stress drops from corner frequencies assuming Brune's source model and a circular crack.
DOI: 10.7302/z29021pq
title: Appendix5

description: Gene ontology data from mi2004 mutants
description: Methods are described in the dissertation, "Regulation of Müller Stem Cell Properties: Insights From a Zebrafish Model".
DOI: 10.7302/h4dm-g807
title: Genetic Determinants of the Development and Evolution of Drosophila Pigmentation Supplemental Files

description: This Work contains Supplemental File S3-1, Supplemental File S3-2, Supplemental Table S4-1, Supplemental Table S4-2, and Supplemental Table S4-3 from the dissertation entitled "Genetic Determinants of the Development and Evolution of Drosophila Pigmentation" by Abigail M. Lamb. Supplemental File S3-1 is entitled "Raw data measuring CHC abundance" and contains the measurements of cuticular hydrocarbons used for analysis in Chapter 3 of the dissertation. These data are meant to be read into the R code contained in Supplemental File S3-2, "R code used for analyzing CHC data" to reproduce the results reported in Chapter 3 of the dissertation.  Supplemental Tables S4-1, S4-2, and S4-3 contain original phenotyping data, notes, and summary data from the miRNA overexpression and competitive inhibition experiments described in Chapter 4 of the dissertation.
description: This Work contains the data files which cannot be practically embedded in the dissertation entitled "Genetic Determinants of the Development and Evolution of Drosophila Pigmentation", submitted 2021 by Abigail M. Lamb. All methodological details are contained within said dissertation document.
DOI: 10.7302/z2rr1wgm
title: Student Writing Portfolios Test

description: This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication https://doi.org/10.3998/mpub.10079890, and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a - https://doi.org/10.3998/mpub.10079890.cmp.1 to the publication. 
description: This link will download a zipped folder of files created with SiteSucker, “a Macintosh application that automatically downloads websites from the Internet. It does this by asynchronously copying the site's webpages, images, PDFs, style sheets, and other files to your local hard drive, duplicating the site's directory structure” (SiteSucker Manual - https://ricks-apps.com/osx/sitesucker/archive/2.x/2.6.x/2.6/manuals/en/pgs/Overview.html). To open the eportfolio website compressed in this zipped folder, you will need to double-click on the subfolder titledfirstnamelastname.wordpress.com (e.g., kaylacockrum.wordpress.com), and then double-click on the file titled index.html. Opening this file will launch a browser window showing the eportfolio home page, and from there you will be able to navigate the eportfolio website offline. Because this site is offline, external links to online urls will not function. (Please note that SiteSucker is not compatible with the Chrome browser, and should be opened using Firefox or Safari browsers.)
DOI: 10.7302/gb3r-2j98
title: Bayesian Population Correlation: A probabilistic approach to comparing detrital zircon age distributions

description: Detrital zircon age distributions provide robust insights into past sedimentary systems,
but these age distributions are often complex and multi-peaked, with sample sizes too
small to confidently resolve population distributions. This limited sampling hinders
existing quantitative methods for comparing detrital zircon age distributions, which
show systematic dependence on the sizes of compared samples. The proliferation of
detrital zircon studies motivates the development of more robust quantitative methods.
We present the first attempt, to our knowledge, to infer probability model ensembles
(PMEs) for samples of detrital zircon ages using a Bayesian method. Our method infers
the parent population age distribution from which a sample is drawn, using a Monte
Carlo approach to aggregate a representative set of probability models that is consistent
with the constraints that the sample data provide.
Using the PMEs inferred from sample data, we develop a new estimate of correspondence
between detrital zircon populations called Bayesian Population Correlation
(BPC). Tests of BPC on synthetic and real detrital zircon age data show that it is nearly
independent from sample size bias, unlike existing correspondence metrics. Robust
BPC uncertainties can be readily estimated, enhancing interpretive value.
When comparing two partially overlapping zircon age populations where the shared
proportion of each population is independently varied, BPC results conform almost perfectly
to expected values derived analytically from probability theory. This conformity
of experimental and analytical results permits direct inference of the shared proportions
of two detrital zircon age populations from BPC. We provide MATLAB scripts to facilitate the procedures we describe.
description: The files are a set of scripts for carrying out a Bayesian inference method that models a set of probability distributions from which a sample might have been drawn.  These sets of probability distributions are then used to make a quantitative assessment of how similar the two populations are.  The metric of this assessment is known as Bayesian Population Correlation (BPC).  The datasets for which this method is primarily intended for use are U-Pb ages of detrital zircons in sedimentary rocks or modern sedimentary systems.  The paper describing this method is in review (Feb. 2018) at Geochemistry, Geophysics, Geosystems under the following title and authors:

Tye, A. R., Wolf, A. S., Niemi, N. A. Bayesian Population Correlation: A probabilistic approach to comparing detrital zircon age distributions.