cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5508675
title: Data of Self-Weight Consolidation Process of Water-Saturated Deltas on Mars and Earth

description: <strong>Data of the paper "Self-Weight Consolidation Process of Water-Saturated Deltas on Mars and Earth".</strong> This dataset includes seven tables. <strong>Table S1</strong> is the original data of moisture content <em>w</em><sub>0</sub> for G_coarse and G_fine groups, <strong>Table S2</strong> is the original data of the specific gravity <em>G</em>s of the FDHX samples by pycnometer test, <strong>Table S3</strong> is the original data of consolidation experiments for G_corase groups, <strong>Table S4</strong> is the original data of consolidation experiments for G_fine groups, <strong>Table S5</strong> is the original data of permeability experiments for G_coarse groups, <strong>Table S6</strong> is the original data of permeability experiments for G_fine groups, and <strong>Table S</strong><strong>7</strong> is the martian global deltas’ reliefs we obtained based on MOLA data, which are used as the maximum thicknesses of deltas.
DOI: 10.5281/zenodo.5508855
title: Dataset of the paper "An Empirical Characterization of Software Bugs in Open-Source Cyber-Physical Systems"

description: <br> #Dataset Package for the paper "An Empirical Characterization of Software Bugs in Open-Source Cyber-Physical Systems" <br> Description of the content: <br> 1) "1_RQ-CPS-bugs-Taxonomy" folder contains all the main experimental data concerning the issues sampled and analyzed from all the Projects considered in the study,<br> including row-data on the taxonomy validtion steps.<br> <br> - Under "the sub-folder "1_Taxonomy-Raw-data" are reported the row-data concerning the taxonomy validtion steps <br> 2) "2_Scripts" contains all scripts used to generate the issue data and sampled issue raw-data in the previous folders: <br> - "setup.md" file in the folder describes how to set=up and run the script used for collecting and sampling the issues for the validation steps:<br> <br> - runJSONtoCSV.sh<br> - JSONtoCSV.py<br> - generateListOfAllSamples.py<br> - generateAllSamples.r<br> <br> Under "the sub-folder "1_Scripts/1_Data_Collection":<br> <br> <br> 3) "3_Final Taxonomy" folder contains the final Table representation (also reported in the previous folder) and main figures of the CPSs Bugs Taxonomy.
DOI: 10.6084/m9.figshare.16621711
title: Gene annotation of Artemisia argyi

description: Gene annotation of Artemisia argyi
DOI: 10.6084/m9.figshare.16621711.v1
title: Gene annotation of Artemisia argyi

description: Gene annotation of Artemisia argyi
DOI: 10.25934/00005125.1
title: Available IPD datapackage for study 'An International, Double-blind, Parallel-group, Placebo-controlled, Randomized Study: Evaluation of the Efficacy and Safety of Brivaracetam in Subjects (&gt;= 16 to 70 Years Old) With Partial Onset Seizures'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00005125.2
title: IPD datapackage for study 'An International, Double-blind, Parallel-group, Placebo-controlled, Randomized Study: Evaluation of the Efficacy and Safety of Brivaracetam in Subjects (&gt;= 16 to 70 Years Old) With Partial Onset Seizures' included in Research Request: 'Heterogeneity in relative treatment efficacy by age, sex, socioeconomic status and comorbidity (McAllister)'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.5281/zenodo.5508803
title: Supplementary datasets for the paper of "Multi-resBind: a residual network-based multi-label classifier for in vivo RNA binding prediction and preference visualization"

description: There are two eCLIP datasets (cell lines of K562 and HepG2). The eCLIP datasets were then divided into five categories for each cell line: low, medium 1, medium 2, high 1 and high 2 with peaks of &gt;1,000 but &lt;2,000, &gt;2,000 but &lt;4,000, &gt;4,000 but &lt;7,000, &gt;7,000 but &lt;10,000 and &gt;10,000, respectively.
DOI: 10.5281/zenodo.5508802
title: Supplementary datasets for the paper of "Multi-resBind: a residual network-based multi-label classifier for in vivo RNA binding prediction and preference visualization"

description: There are two eCLIP datasets (cell lines of K562 and HepG2). The eCLIP datasets were then divided into five categories for each cell line: low, medium 1, medium 2, high 1 and high 2 with peaks of &gt;1,000 but &lt;2,000, &gt;2,000 but &lt;4,000, &gt;4,000 but &lt;7,000, &gt;7,000 but &lt;10,000 and &gt;10,000, respectively.
DOI: 10.6084/m9.figshare.16621741
title: HxnR_phylogenetic_data.fasta from Genome organization and evolution of a eukaryotic nicotinate co-inducible pathway

description: Full lists of manually deduced HxnR protein sequences used for phylogenetic analysis.
DOI: 10.6084/m9.figshare.16621741.v1
title: HxnR_phylogenetic_data.fasta from Genome organization and evolution of a eukaryotic nicotinate co-inducible pathway

description: Full lists of manually deduced HxnR protein sequences used for phylogenetic analysis.
DOI: 10.6084/m9.figshare.16621744
title: Pfd_phylogenetic_data.fasta from Genome organization and evolution of a eukaryotic nicotinate co-inducible pathway

description: Full lists of manually deduced Pfd protein sequences used for phylogenetic analysis.
DOI: 10.6084/m9.figshare.16621747
title: HxnT_phylogenetic_data.fasta from Genome organization and evolution of a eukaryotic nicotinate co-inducible pathway

description: Full lists of manually deduced HxnT protein sequences used for phylogenetic analysis.
DOI: 10.6084/m9.figshare.16621744.v1
title: Pfd_phylogenetic_data.fasta from Genome organization and evolution of a eukaryotic nicotinate co-inducible pathway

description: Full lists of manually deduced Pfd protein sequences used for phylogenetic analysis.
DOI: 10.6084/m9.figshare.16621747.v1
title: HxnT_phylogenetic_data.fasta from Genome organization and evolution of a eukaryotic nicotinate co-inducible pathway

description: Full lists of manually deduced HxnT protein sequences used for phylogenetic analysis.
DOI: 10.6084/m9.figshare.16621753.v1
title: HxnS_phylogenetic_data.fasta from Genome organization and evolution of a eukaryotic nicotinate co-inducible pathway

description: Full lists of manually deduced HxnS protein sequences used for phylogenetic analysis.
DOI: 10.6084/m9.figshare.16621753
title: HxnS_phylogenetic_data.fasta from Genome organization and evolution of a eukaryotic nicotinate co-inducible pathway

description: Full lists of manually deduced HxnS protein sequences used for phylogenetic analysis.
DOI: 10.6084/m9.figshare.16621762
title: HxnM_phylogenetic_data.fasta from Genome organization and evolution of a eukaryotic nicotinate co-inducible pathway

description: Full lists of manually deduced HxnM protein sequences used for phylogenetic analysis.
DOI: 10.6084/m9.figshare.16621759
title: HxnV_phylogenetic_data.fasta from Genome organization and evolution of a eukaryotic nicotinate co-inducible pathway

description: Full lists of manually deduced HxnV protein sequences used for phylogenetic analysis.
DOI: 10.6084/m9.figshare.16621759.v1
title: HxnV_phylogenetic_data.fasta from Genome organization and evolution of a eukaryotic nicotinate co-inducible pathway

description: Full lists of manually deduced HxnV protein sequences used for phylogenetic analysis.
DOI: 10.6084/m9.figshare.16621762.v1
title: HxnM_phylogenetic_data.fasta from Genome organization and evolution of a eukaryotic nicotinate co-inducible pathway

description: Full lists of manually deduced HxnM protein sequences used for phylogenetic analysis.
DOI: 10.6084/m9.figshare.5522002.v2
title: Phytochemical Profiling and Evaluation of the Hepatoprotective Effect of <i>Cuscuta Campestris</i> by High-Performance Liquid Chromatography with Diode Array Detection

description: Plant-derived antioxidant compounds have the potential to prevent cell damage caused by free radicals. As a holoparasitic plant, <i>Cuscuta campestris</i> Yuncker is being valorized for treatment of liver injury and cancer prevention in traditional medicine. The main purpose of this present study is to elucidate the antioxidant- and anticancer-associated contents of <i>C. campestris</i> by spectroscopic and chromatographic methods. Diethyl ether, ethyl acetate, methanol, <i>n</i>-butanol, and water were used as extraction solvents to reach a wide range of secondary metabolites synthesized by this plant. Antioxidant potentials of these extracts were characterized by (2,2-diphenyl-1-picrylhydrazyl)-free radical scavenging activity. Their anticancer activities were evaluated on SNU-398 hepatocellular carcinoma cells and controlled on the normal adult human dermal fibroblasts (hDFs) cells. Their phenolic compounds were analyzed by high-performance liquid chromatography with diode array detector to illuminate the responsible anticancer agent(s). The ethyl acetate extract revealed the most significant antioxidant effect. Methanol and ethyl acetate extracts were found to be cytotoxic on the SNU-398 cell lines with CC<sub>50</sub> values of 18.7 and 19.6 µg mL<sup>−1</sup>, respectively, whereas these extracts were not cytotoxic to the adult hDFs cells. Due to their abundance in the extracts, isorhamnetin, kaempferol, and quercetin may have caused this anticancer activity. Methanol extract has the highest concentration of phenolic compounds. Based on chromatographic analyses, we propose that these anticancer effects were positively correlated with plant phenolic compounds. The results showed that this plant is worth further study for its therapeutic uses.
DOI: 10.6084/m9.figshare.5522002
title: Phytochemical Profiling and Evaluation of the Hepatoprotective Effect of <i>Cuscuta Campestris</i> by High-Performance Liquid Chromatography with Diode Array Detection

description: Plant-derived antioxidant compounds have the potential to prevent cell damage caused by free radicals. As a holoparasitic plant, <i>Cuscuta campestris</i> Yuncker is being valorized for treatment of liver injury and cancer prevention in traditional medicine. The main purpose of this present study is to elucidate the antioxidant- and anticancer-associated contents of <i>C. campestris</i> by spectroscopic and chromatographic methods. Diethyl ether, ethyl acetate, methanol, <i>n</i>-butanol, and water were used as extraction solvents to reach a wide range of secondary metabolites synthesized by this plant. Antioxidant potentials of these extracts were characterized by (2,2-diphenyl-1-picrylhydrazyl)-free radical scavenging activity. Their anticancer activities were evaluated on SNU-398 hepatocellular carcinoma cells and controlled on the normal adult human dermal fibroblasts (hDFs) cells. Their phenolic compounds were analyzed by high-performance liquid chromatography with diode array detector to illuminate the responsible anticancer agent(s). The ethyl acetate extract revealed the most significant antioxidant effect. Methanol and ethyl acetate extracts were found to be cytotoxic on the SNU-398 cell lines with CC<sub>50</sub> values of 18.7 and 19.6 µg mL<sup>−1</sup>, respectively, whereas these extracts were not cytotoxic to the adult hDFs cells. Due to their abundance in the extracts, isorhamnetin, kaempferol, and quercetin may have caused this anticancer activity. Methanol extract has the highest concentration of phenolic compounds. Based on chromatographic analyses, we propose that these anticancer effects were positively correlated with plant phenolic compounds. The results showed that this plant is worth further study for its therapeutic uses.
DOI: 10.6084/m9.figshare.5522002.v1
title: Phytochemical Profiling and Evaluation of the Hepatoprotective Effect of <i>Cuscuta campestris</i> by High-Performance Liquid Chromatography with Diode Array Detection

description: Plant derived antioxidant compounds have the potential to prevent cell damage caused by free radicals. As a holoparasitic plant, <i>Cuscuta campestris</i> Yuncker is being valorized for treatment of liver injury and cancer prevention in traditional medicine. The main purpose of this present study is to elucidate the antioxidant and anti-cancer associated content of <i>C. campestris</i> by spectroscopic and chromatographic methods. Diethyl ether, ethyl acetate, methanol, <i>n</i>-butanol and water were used as extraction solvents to reach a wide range of secondary metabolites synthesized by this plant. Antioxidant potential of these extracts were characterized by DPPH (2,2-diphenyl-1-picrylhydrazyl) free radical scavenging activity. Their anticancer activities were evaluated on SNU-398 hepatocellular carcinoma cells and controlled on the normal adult human dermal fibroblasts (hDFs) cells. Their phenolic compounds were analyzed by high-performance liquid chromatography with diode array detector (HPLC-DAD) to illuminate the responsible anticancer agent(s). The ethyl acetate extract revealed the most significant antioxidant effect. Methanol and ethyl acetate extracts were found to be cytotoxic on the SNU-398 cell lines with CC<sub>50</sub> values of 18.7 and 19.6 µg/mL, respectively, while these extracts were not cytotoxic to the adult human dermal fibroblasts cells. Due to their abundance in the extracts, isorhamnetin, kaempferol and quercetin may have caused this anticancer activity. Methanol extract has the highest concentration of phenolic compounds. Based on chromatographic analyzes, we propose that these anticancer effects were positively correlated with plant phenolic compounds. The results showed that this plant is worth further study for its therapeutic uses.
DOI: 10.5281/zenodo.5508929
title: The differential inflammatory infiltration and gene expression in left and right atrium in patients with atrial fibrillation

description: <strong>Background: </strong>The difference between left and right atrium in Atrial fibrillation (AF) is still lacking. In the present study, we aimed to identify differences in immune infiltration and differentially expressed genes (DEGs) between atrial tissue in patients with AF and sinus rhythm (SR), and to compare the differences between left and right atrial tissues in AF. <strong>Methods:</strong> The gene data of GSE79768, GSE115574, and GSE128188 from the Gene Expression Omnibus (GEO) database were retrieved. After merging all data and adjusting batch effect, DEGs were identified. Single-Sample Gene Set Enrichment Analysis (ssGESA), Functional enrichment analyses based on Gene Ontology (GO) resource, Kyoto Encyclopedia of Genes and Genomes (KEGG) resource, ESTIMATE algorithm were carried out to analyze the difference between AF and SR. <strong>Results:</strong> In total, 105 atrial samples from 3 studies were included in the analysis. Compared with SR, AF tissue had more CD8 T cells (P = 0.039) and Th2 cells (P = 0.016), and it had fewer Th17 cells (P = 0.008), Tgd (P &lt; 0.001) and NK CD56dim cells (P = 0.047). The differences between the left and right atrium in AF and SR were analyzed. In AF atrium tissue, a total of 88 DGEs (26 up-regulated, 61 down-regulated) were obtained. The enrichment signaling pathways and biological functions of DGEs were predicted. <strong>Conclusions:</strong> The differing immune infiltrating cells and DEGs in left and right atrium indicate that there are different mechanisms for development remodeling and inflammatory environment of AF within the left and right atrium.
DOI: 10.5281/zenodo.5508928
title: The differential inflammatory infiltration and gene expression in left and right atrium in patients with atrial fibrillation

description: <strong>Background: </strong>The difference between left and right atrium in Atrial fibrillation (AF) is still lacking. In the present study, we aimed to identify differences in immune infiltration and differentially expressed genes (DEGs) between atrial tissue in patients with AF and sinus rhythm (SR), and to compare the differences between left and right atrial tissues in AF. <strong>Methods:</strong> The gene data of GSE79768, GSE115574, and GSE128188 from the Gene Expression Omnibus (GEO) database were retrieved. After merging all data and adjusting batch effect, DEGs were identified. Single-Sample Gene Set Enrichment Analysis (ssGESA), Functional enrichment analyses based on Gene Ontology (GO) resource, Kyoto Encyclopedia of Genes and Genomes (KEGG) resource, ESTIMATE algorithm were carried out to analyze the difference between AF and SR. <strong>Results:</strong> In total, 105 atrial samples from 3 studies were included in the analysis. Compared with SR, AF tissue had more CD8 T cells (P = 0.039) and Th2 cells (P = 0.016), and it had fewer Th17 cells (P = 0.008), Tgd (P &lt; 0.001) and NK CD56dim cells (P = 0.047). The differences between the left and right atrium in AF and SR were analyzed. In AF atrium tissue, a total of 88 DGEs (26 up-regulated, 61 down-regulated) were obtained. The enrichment signaling pathways and biological functions of DGEs were predicted. <strong>Conclusions:</strong> The differing immune infiltrating cells and DEGs in left and right atrium indicate that there are different mechanisms for development remodeling and inflammatory environment of AF within the left and right atrium.
DOI: 10.6084/m9.figshare.16617562
title: Bioluminescent single-cell traces related to Fig.1

description: Excel files contain bioluminescence expression from single-cell traces of E13.5 LUC2-HES1 LGE NSCs cultured in proliferative, quiescent and reactivated conditions. The traces were extracted from bioluminescence movies of NSCs using the Imaris software. These data relate to Fig.1C-H and Supplementary Fig.2B-D.<br> The background traces included in the files have been smoothed using a nonlinear polynomial (order 2). The smoothed background timeseries were then subtracted from the bioluminescence timeseries corresponding to each cell at each available time point.<br> In the files we have included the single-cell timeseries after background subtraction and after splitting them into 10h chunks. For example, a cell trace (Cell 1) that has 125 time frames (with each timeframe corresponding to a 10min interval) was split into 3 traces: two with 60 time frames (Cell 1 and Cell b1) and one with 5 (Cell c1). The number in the naming of the trace indicates the original cell number and the letters indicate how many parts the trace was split into. The traces were then aligned to all start from time frame 0 but this doesn’t correspond to the start of the actual cell trace from the movies.<br> These files were used as an input for the Gaussian Processes method as described in the materials and methods section of the paper and by using the code linked to that section. The code will filter out any traces that have a length shorter than 5.5h (33 frames).
DOI: 10.5281/zenodo.5291910
title: Electrophysiology Data for "Two functional epithelial sodium channel isoforms are present in rodents despite pronounced evolutionary pseudogenization and exon fusion"

description: Here we provide the electrophysiology data for the manuscript "Two functional epithelial sodium channel isoforms are present in rodents despite pronounced evolutionary pseudogenization and exon fusion", published in Molecular Biology and Evolution (2021): msab271 (doi: 10.1093/molbev/msab271). Data are reported as current values in Excel format, sorted according to the appearance in Figures and supplemented by explanatory text on the procedures/data presentation.
DOI: 10.5281/zenodo.5291909
title: Electrophysiology Data for "Two functional epithelial sodium channel isoforms are present in rodents despite pronounced evolutionary pseudogenization and exon fusion"

description: Here we provide the electrophysiology data for the manuscript "Two functional epithelial sodium channel isoforms are present in rodents despite pronounced evolutionary pseudogenization and exon fusion", published in Molecular Biology and Evolution (2021): msab271 (doi: 10.1093/molbev/msab271). Data are reported as current values in Excel format, sorted according to the appearance in Figures and supplemented by explanatory text on the procedures/data presentation.
DOI: 10.6084/m9.figshare.14838840
title: Supplementary Material for: Conversion from Intermediate Age-Related Macular Degeneration to Geographic Atrophy in a Proxima B Subcohort Using a Multimodal Approach

description: Medicine
DOI: 10.6084/m9.figshare.14838840.v1
title: Supplementary Material for: Conversion from Intermediate Age-Related Macular Degeneration to Geographic Atrophy in a Proxima B Subcohort Using a Multimodal Approach

description: Medicine