cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5518/1322
title: Dataset associated with "Exploring the useful energy implications of the global energy transition: a net energy perspective"

description: This dataset contains data associated with the PhD thesis "Exploring the useful energy implications of the global energy transition: a net energy perspective"
DOI: 10.5281/zenodo.14071252
title: Dataset: The blue halite in Morsleben, Germany: a natural lyoluminescence dosimeter?

description: This repository provides the complete dataset and supplementary files used in our luminescence study, submitted to the Journal of Luminescence. Included materials support reproducibility and allow for further exploration of lyoluminescence properties of salts from the Morsleben repository managed by the Bundesgesellschaft für Endlagerung (BGE).

The work done at the IFJ PAN was supported by the National Science Centre, Poland (grant No 2021/43/D/ST5/03042).
DOI: 10.5281/zenodo.14071253
title: Dataset: The blue halite in Morsleben, Germany: a natural lyoluminescence dosimeter?

description: This repository provides the complete dataset and supplementary files used in our luminescence study, submitted to the Journal of Luminescence. Included materials support reproducibility and allow for further exploration of lyoluminescence properties of salts from the Morsleben repository managed by the Bundesgesellschaft für Endlagerung (BGE).

The work done at the IFJ PAN was supported by the National Science Centre, Poland (grant No 2021/43/D/ST5/03042).
DOI: 10.15468/dl.dcdm6v
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Diaporthe rudis, Diaporthe rudis, Diaporthe rudis (Fr.) Nitschke, Diaporthe rudis, Diaporthe rudis (Fr.) Nitschke, Diaporthe rudis (Fr.) Nitschke, Diaporthe rudis (Fr.) Nitschke, Diaporthe rudis (Fr.) Nitschke, 1870, Diaporthe rudis (Fr.) Nitschke, Diaporthe rudis (Fr.) Nitschke, Diaporthe rudis (Fr.) Nitschke, Diaporthe rudis (Fr.) Nitschke, Diaporthe rudis (Fr.) Nitschke, Diaporthe rudis (Fr.) Nitschke, Diaporthe rudis (Fr.) Nitschke, Diaporthe rudis (Fr.) Nitschke, Diaporthe rudis (Fr.) Nitschke, 161258772, Rabenhorstia rudis (Fr.) Fr., Rabenhorstia rudis (Fr.) Fr., 1849, 161258800, Diaporthe juglandina (Fuckel) Nitschke, 1870, Aglaospora rudis (Fr.) Tul. & C. Tul., Aglaospora rudis (Fr.) Tul. & C.Tul., Diaporthe medusata Nitschke, Phomopsis rudis (Fr.) Höhn., Valsa faginea Berk. & Broome, Aplosporella rudis (Fr.) Petr. & Syd., 161258795, Aplosporella rudis (Fr.) Petr. & Syd., 161258781, 161258788, 161258797, Phomopsis rudis (Fr.) Höhn., Valsa faginea Berk. & Broome, Sphaeria faginea Curr., Phoma rudis Sacc., Phomopsis rudis (Sacc.) Höhn., Phomopsis rudis (Fr.) Höhn., Diaporthe medusaea Nitschke, Diaporthe faginea (Currey) Sacc., Hercospora rudis (Fr.) Auersw., Diaporthe medusaea Nitschke, Diaporthe viticola Nitschke, 1870, Phoma juglandina (Fuckel) Sacc., 1879, Sphaeria rudis Fr., Diaporthe medusaea Nitschke, Aplosporella rudis (Fr.) Petr. & Syd., Diaporthe faginea (Berk. & Broome) Sacc., Valsa faginea Curr., Hercospora rudis (Fr.) Auersw., Aglaospora rudis (Fr.) Tul. & C. Tul., Phomopsis rudis (Sacc.) Höhn., Phoma rudis Sacc., Sphaeria faginea Curr., Diaporthe medusata Nitschke, Sphaeria rudis Fr., 1828, Hercospora rudis (Fr.) Auersw., 1868, Phomopsis juglandina (Sacc.) Höhn., 1906, Valsa faginea Berk. & Broome, Rabenhorstia rudis (Fr.) Fr., Valsa faginea Berk. & Broome, 161258785, 161258806, Sphaeria rudis Fr., Sphaeria rudis Fr., Sphaeria faginea Curr., Sphaeria faginea Curr., Hercospora rudis (Fr.) Auersw., Aglaospora juglandina Fuckel, 1868, Diaporthe faginea (Berk. & Broome) Sacc., 1882, 161258775, Rabenhorstia rudis (Fr.) Fr., Valsa faginea Curr., Phoma rudis Sacc., Diaporthe faginea (Berk. & Broome) Sacc., 161258791, Phomopsis rudis (Sacc.) Höhn., Phoma rudis Sacc., 161258778, Aglaospora rudis (Fr.) Tul. & C.Tul., 1863, 161258803, Diaporthe faginea (Berk. & Broome) Sacc., Diaporthe medusaea Nitschke, Sphaeria rudis Fr., Diaporthe faginea (Berk. & Broome) Sacc., Rabenhorstia rudis (Fr.) Fr.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 66 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012330-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4x6q8d
title: Occurrence Download

description: A dataset containing 191 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Hosta minor (Baker) Nakai)"
 ]
}

 The dataset includes 191 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012331-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13784959
title: Pressure-dependent magnetism of the Kitaev candidate Li2RhO3

description: Collection of the figures data for the pressure study of Li2RhO3
DOI: 10.15468/dl.3shn48
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Xanthomonas campestris (Pammel, 1895) Dowson, 1939)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012334-241107131044228/datasets/export for details.
DOI: 10.15468/dl.9taqkz
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((68.28758 -11.82467,134.01725 -11.82467,134.01725 37.78737,68.28758 37.78737,68.28758 -11.82467))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pandanus furcatus Roxb."
 ]
}

 The dataset includes 54 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012333-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xdseqb
title: Occurrence Download

description: A dataset containing 23402 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((95.29046 18.03544,95.78538 21.56675,96.17443 22.21847,97.44962 24.76565,97.85021 27.44188,96.45804 27.79249,90.20049 26.44778,89.84682 25.96287,89.80119 25.3981,91.12006 24.62437,91.11682 21.23746,91.04609 20.67598,91.82418 20.14562,95.29046 18.03544))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae",
 "Year 1743-2024"
 ]
}

 The dataset includes 23402 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012332-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14139207
title: Antibacterial effect of Hibiscus sabdariffa (Roselle) extract in synergism with voriconazole and fluconazole against fluconazole-resistant Candida albicans isolates: An in vitro study.
DOI: 10.5281/zenodo.14139208
title: Antibacterial effect of Hibiscus sabdariffa (Roselle) extract in synergism with voriconazole and fluconazole against fluconazole-resistant Candida albicans isolates: An in vitro study.
DOI: 10.5518/1325
title: Amazon deforestation causes strong regional warming
DOI: 10.15468/dl.tpuxdn
title: Occurrence Download

description: A dataset containing 5635575 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chiroptera",
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "HasCoordinate is true",
 "Year is greater than or equal to 1970",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 5635575 records from 5655 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012230-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dz9v77
title: Aix-Marseille Université - MARS herbarium – Herbier de cryptogames d’Honoré Roux, Provence, France

description: Honoré Roux (1812-1892) fut Président honoraire de la Société d’Horticulture et de Botanique et directeur adjoint du Jardin botanique de Marseille. Il a constitué un herbier de phanérogames comportant plus de 7000 taxons ayant servi de base à la publication d’un ouvrage majeur : « Le Catalogue des plantes de Provence » (1881 et son supplément en 1889) concernant la flore des départements de Provence, Alpes et Côte d’Azur.
En outre, il a récolté et mis en herbier de nombreux cryptogames minutieusement listés et rangés selon la numérotation de ses cahiers personnels dont la très grande majorité ont été récoltés dans les Bouches-du-Rhône entre 1850 et 1880. Ce jeu de données est issu de l’inventaire de ses collections de cryptogames :
- Les bryophytes (1748 échantillons), 
- Les lichens (908 échantillons), 
- Les fungi (525 échantillons).Cette collection a été inventoriée grâce à une subvention du Ministère 
de l’Enseignement Supérieur et de la Recherche pour l’Informatisation 
des collections scientifiques patrimoniales (AAP 2022 et AAP 2023).Cette collection a été inventoriée grâce à une subvention du Ministère de l’Enseignement Supérieur et de la Recherche pour l’Informatisation des collections scientifiques patrimoniales (AAP 2022).
DOI: 10.6084/m9.figshare.28816991.v1
title: Supplementary Material for: Intramedullary Glioblastoma as one of multiple radiation-induced neoplasms: Case Report

description: Background
Intramedullary glioblastoma is a rare entity comprising 1,4-9% of spinal gliomas. Spinal cord radiation-induced gliomas are unique, with only thirteen cases reported to date.
Case presentation
A 53-year-old female with a history of mediastinal Hodgkin lymphoma treated with chemotherapy and radiotherapy who subsequently developed thyroid cancer and breast cancer throughout her life, was admitted due to slowly progressing spastic tetraparesis. Cervical MRI revealed an intramedullary lesion at the C4-T1 level, enlarging the spinal cord, with a heterogenous contrast enhancement and a lesion within T1 vertebral body showing contrast enhancement. Whole body 18F-FDG-PET/CT revealed increased radionuclide uptake within the cervical spinal cord at the C2-C7 level and a focus of increased metabolic activity within the T1 vertebral body. The patient underwent a C4-T2 laminectomy with tumor debulking, and a biopsy of the T1 vertebral body was taken. Closure was performed with thecal sac expansion using a fascia lata graft, and laminoplasty was performed using the open-door technique. Postoperatively, the patient experienced progression of lower extremities and left arm paresis. The histomolecular results confirmed the diagnosis of Glioblastoma, IDH-wildtype (CNS WHO G4) in the cervical spinal cord lesion and breast cancer metastasis in the T1 vertebral body. No adjuvant therapy was administered due to neurological deficit progression. The patient died 6 months after surgery.
Conclusion
We report a case of an intramedullary glioblastoma in a patient with a history of radiation and multiple neoplasms located at the irradiation field borders. The full molecular analysis allowed for classification of the tumor as Glioblastoma, IDH-wildtype (CNS WHO G4) and screening for germinal mutations potentially predisposing to spontaneous neoplasm development.
DOI: 10.6084/m9.figshare.28816994
title: Supplementary Material for: Development of the Gamma-hydroxybutyrate withdrawal symptom questionnaire (GWSQ)

description: Introduction
Gamma-hydroxybutyrate (GHB) dependence has been associated with a potentially fulminant withdrawal syndrome. As GHB withdrawal symptoms can rapidly progress from mild to more severe, close monitoring during detoxification is important. However, a concise, GHB-specific withdrawal scale is currently lacking. The aim of this study is to compose a concise GHB-specific withdrawal scale as monitoring instrument.

Method
This study used monitoring data from 285 patients with GHB use disorder (GUD) admitted for inpatient detoxification. The six-step plan for shortening measurement scales proposed by Goetz et al. (2013) was applied. Only subjective GHB withdrawal symptoms were used. To identify the factor structure, a principal component analysis (PCA) with Direct Oblimin Rotation was performed. The pattern matrix was used to assess the factor loading per item. Item selection was based on factor loadings &gt;0.4 and clinical relevance of the symptoms. Multiple lists were created whose psychometric qualities (concurrent validity, convergent validity, reliability) were compared.

Results
The PCA resulted in eight components (Eigenvalue &gt; 1.0). Item selection resulted in five candidate lists with 8, 9, 16 (2x) and 27 items. All lists showed good concurrent and convergent validity. Only one with 16 items combined good psychometric properties with the need for a shortened questionnaire combined with all clinically relevant items.

Conclusions
We recommend a novel 16-item GHB Withdrawal Symptoms Questionnaire (GWSQ) to monitor withdrawal during detoxification in patients with GUD. Implementation of this scale should be evaluated to determine its validity and usefulness in clinical practice.
DOI: 10.15468/dl.9jcnkh
title: Occurrence Download

description: A dataset containing 2134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sarda sarda (Bloch, 1793)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen, Material sample)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 2134 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004595-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28816994.v1
title: Supplementary Material for: Development of the Gamma-hydroxybutyrate withdrawal symptom questionnaire (GWSQ)

description: Introduction
Gamma-hydroxybutyrate (GHB) dependence has been associated with a potentially fulminant withdrawal syndrome. As GHB withdrawal symptoms can rapidly progress from mild to more severe, close monitoring during detoxification is important. However, a concise, GHB-specific withdrawal scale is currently lacking. The aim of this study is to compose a concise GHB-specific withdrawal scale as monitoring instrument.

Method
This study used monitoring data from 285 patients with GHB use disorder (GUD) admitted for inpatient detoxification. The six-step plan for shortening measurement scales proposed by Goetz et al. (2013) was applied. Only subjective GHB withdrawal symptoms were used. To identify the factor structure, a principal component analysis (PCA) with Direct Oblimin Rotation was performed. The pattern matrix was used to assess the factor loading per item. Item selection was based on factor loadings &gt;0.4 and clinical relevance of the symptoms. Multiple lists were created whose psychometric qualities (concurrent validity, convergent validity, reliability) were compared.

Results
The PCA resulted in eight components (Eigenvalue &gt; 1.0). Item selection resulted in five candidate lists with 8, 9, 16 (2x) and 27 items. All lists showed good concurrent and convergent validity. Only one with 16 items combined good psychometric properties with the need for a shortened questionnaire combined with all clinically relevant items.

Conclusions
We recommend a novel 16-item GHB Withdrawal Symptoms Questionnaire (GWSQ) to monitor withdrawal during detoxification in patients with GUD. Implementation of this scale should be evaluated to determine its validity and usefulness in clinical practice.
DOI: 10.6084/m9.figshare.28816997
title: Supplementary Material for: Longitudinal Changes in Peritoneal Transport and Their Impact on Dialysis Outcomes: A Machine Learning Approach integrating Clinical and Biomarker Data

description: Introduction: Longitudinal changes in peritoneal transport patterns and the predictive role of dialysate biomarkers remain poorly understood. This study assessed the impact of peritoneal equilibration test (PET) trajectory changes on clinical outcomes, explored biomarker contributions, and developed a machine learning-based model to predict peritoneal transport transitions.
Methods: This prospective study enrolled peritoneal dialysis (PD) patients aged ≥ 18 years from 2016 to 2017, with follow-up until 2020. Patients with missing PET data or acute illness within two months of PET were excluded. Based on longitudinal PET changes, patients were classified into four trajectory groups: Persistent High (HH), High to Low (HL), Low to High (LH), and Persistent Low (LL). Clinical outcomes included technique failure and mortality. Dialysate biomarkers were quantified using ELISA and standardized by appearance rates (AR). A Support Vector Machine (SVM) model was developed to predict PET trajectory changes using clinical and biomarker data. Model performance was assessed using accuracy, precision, recall, F1-score, and area under the curve (AUC).
Results: Among 132 eligible patients, cumulative risk analysis identified the HH group as having the highest risk of adverse outcomes, followed by LH, LL, and HL groups (p = 0.009). Based on prognostic trends, HH and LH were reclassified as the Future High (FH) group, while HL and LL were grouped as the Future Low (FL) group. The FH group had a significantly higher risk of adverse outcomes than the FL group (HR: 7.87, 95% CI: 1.81-34.10, p = 0.005). Matrix metallopeptidase 2 (MMP2) AR and plasminogen activator inhibitor 1 (PAI-1) AR differed significantly across PET trajectory groups (p &lt; 0.001 for both), with the HH group exhibiting the highest biomarker levels (MMP2 AR: 195.0 ng/min, IQR: 145.2-230.0; PAI-1 AR: 2.63 ng/min, IQR: 1.29-4.51). The SVM model integrating clinical and biomarker data outperformed models using clinical data alone, achieving a higher AUC (0.87 vs. 0.71). Risk visualization curves identified males with elevated biomarkers as particularly vulnerable to transitioning to high transporter status.
Conclusions: Sustained or transitioning to a high transporter status significantly increases the risk of adverse outcomes in PD patients. Higher MMP2 AR and PAI-1 AR levels are associated with an increased risk of adverse PET trajectory changes, enhancing risk stratification. Integrating biomarker-based predictive models with clinical data improves prognostic accuracy, supporting early intervention strategies for high risk patients.
DOI: 10.6084/m9.figshare.28817003
title: Supplementary Material for: Metastatic Prostatic Adenocarcinoma to the Penis with Diffuse P16 Expression: Recognizing a Diagnostic Pitfall

description: Introduction: Prostate cancer (PCa) is the most common malignant tumor in men, with acinar adenocarcinoma as the predominant subtype. While PCa metastases typically affect bones, penile metastases are exceedingly rare. Penile tumors are generally squamous cell carcinoma (SCC), with p16 overexpression often used as a surrogate marker for oncogenic human papillomavirus (HPV) infection.
Case Presentation: We report the case of an 85-year-old male with a history of PCa (grade group 5) treated with irradiation and hormonal therapy, who presented with a progressive penile lesion initially misdiagnosed as HPV-associated SCC. Immunohistochemistry revealed diffuse panCK, p16, NKX3.1, AR, and ERG positivity, with Rb1 protein loss confirming metastatic PCa. PSA levels remained within the normal range, complicating the diagnosis.
Conclusion: This case emphasizes the importance of thorough clinico-pathological correlation in unusual metastatic presentations and highlights that p16 overexpression, even in penile tumors, may indicate Rb1 inactivation rather than HPV-related SCC.
DOI: 10.15468/dl.na4xpw
title: Occurrence Download

description: A dataset containing 21072 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Zanclidae"
 ]
}

 The dataset includes 21072 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065657-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qjtaqw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((149.454223 -32.20529, 149.454223 -32.207535, 149.449731 -32.207535, 149.449731 -32.216519, 149.456469 -32.216519, 149.456469 -32.214273, 149.463206 -32.214273, 149.463206 -32.216519, 149.465452 -32.216519, 149.465452 -32.214273, 149.469943 -32.214273, 149.469943 -32.212027, 149.465452 -32.212027, 149.465452 -32.207535, 149.469943 -32.207535, 149.469943 -32.20529, 149.454223 -32.20529)), ((149.463206 -32.216519, 149.458714 -32.216519, 149.458714 -32.22101, 149.463206 -32.22101, 149.463206 -32.216519)), ((149.458714 -32.22101, 149.447485 -32.22101, 149.447485 -32.223256, 149.449731 -32.223256, 149.449731 -32.227748, 149.456469 -32.227748, 149.456469 -32.223256, 149.458714 -32.223256, 149.458714 -32.22101)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065660-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26587566
title: Additional file 2 of Transcriptomic analysis of cave, surface, and hybrid samples of the isopod Asellus aquaticus and identification of chromosomal location of candidate genes for cave phenotype evolution

description: Additional file 2: Supplementary File 1: Late-stage differential expression, CAVE_rr vs SURF_rs reads, mapped both to CAVE_rr and SURF_rs assemblies. Supplementary File 2: Mid-stage differential expression, CAVE_rr vs SURF_rs reads, mapped both to CAVE_rr and SURF_rs assemblies. Supplementary File 3: Allele-specific expression, surface-biased, within F1 hybrids between CAVE_rr and SURF_rs populations. Supplementary File 4: Allele-specific expression, cave-biased, within F1 hybrids between CAVE_rr and SURF_rs populations. Supplementary File 5: Allele-specific expression using allele counting for three F1 hybrid samples. Supplementary File 6: Genes linked to regions responsible for orange pigment, no pigment, and eye loss.