cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15454/yola0y
title: Time series dataset of water temperature profiles during stable summer stratification in Lakes Annecy, Bourget and Geneva

description: Data description : Data are temperature profiles recorded in Lakes Geneva, Bourget and Annecy during the summer period of strong thermal stratification. The dataset consists in one profile per year and it covers the periods 1974 to 2013, 1984 to 2013 and 1991 to 2013 for Lakes Geneva, Bourget and Annecy respectively. Data acquisition : Temperature data were collected from the deepest point in the lakes. Temperature measurements were measured manually using thermometers and multiparameters probes. In Lake Geneva, water temperature was measured manually with a thermometer until 1990 from discrete depths of 5 to 10 meter intervals through 50 meter depth and approximately 50-meter intervals for the rest of the water column. After 1990 various multiparameter probes were used for temperature measurements, Meerestechnik Elektronik (1991-2001), CTD 90 (2002-2007), CTD 90M (2008-2011, 2013), and RBR (2012). In Lake Annecy, various multiparameter probes, including Meerestechnik Elektronik (1991-2001), CTD 90 (2003-2005), CTD 90M (2008-2011, 2013), and RBR (2012) were used for temperature measurements at depth intervals between 0.01 and 1.8 meters. Temperature profiles were measured in Lake Bourget at depth intervals between 0.01 and 10 meters using various multiparameter probes, including ISMA probe DNTC (1984-1985), Meerestechnik Elektronik ECO 236 (1986-1998), CTD SBE 19SeaCAT Profiler (1992-2002), and CTD SBE 19plus V2 SeaCAT (2003-2013). Data processing : A single temperature profile was selected during the stable summer stratified period for each year and lake. The timing of the stable summer stratification was estimated by using the relative thermal resistance to mixing (Pilla et al. submitted). This metric was computed for all sampling dates from 1974 to 2013, 1984 to 2013 and 1991 to 2013 for lakes Geneva, Bourget and Annecy respectively. The median day of year with the highest thermal resistance to mixing was identified for each lake separately. The annual thermal profiles were selected within the time frame of ±21 days from the median day of year with the highest thermal resistance to mixing for each lake. The selected temperature profiles were linearly interpolated or binned to 0.5 m increments from surface to bottom.
DOI: 10.57745/01llzj
title: Exemple fiche Garonne

description: Exemple de fiche - les autres sont disponibles et zippées par région hydrographique
DOI: 10.57745/3spj4b
title: airGRdatasets: Hydro-Meteorological Catchments Datasets for the 'airGR' Packages. R package version 0.2.1

description: Sample of hydro-meteorological datasets extracted from the 'CAMELS-FR' French database . It provides metadata and catchment-scale aggregated hydro-meteorological time series on a pool of French catchments for use by the 'airGR' packages.
DOI: 10.57745/4laqy0
title: Données sources pour l'article "Photoinduced Modulation of the Oxidation State of Dibenzothiophene S-Oxide Molecules on an Insulating Substrate"

description: This dataset contains the raw data (images, spectra, source codes) related to the publication "Photoinduced Modulation of the Oxidation State of Dibenzothiophene S-Oxide Molecules on an Insulating Substrate" by M. Hankache et al., published in Nature Communications (2025).
DOI: 10.57745/0kluny
title: Preparation and characterization of fluorinated alumina and its use for the transformation of of 2-chloropyridine under HF gas

description: Characterization results of partially fluorinated alumina by NMR, XRD, nitrogen adsorption-desorption analysis. The acidity, textural properties (specific surface area, pore volume) have also been determined. Data related to the catalytic results concerning the transformation of 2-chloropyridine under HF gas using the partially fluorinated alumina as support are given.
DOI: 10.57745/3egqxr
title: Organosolv lignin extraction from lignocellulosic biomass

description: In lab, lignins are extracted from various lignocellulosic biomass (flax, miscanthus, pine, poplar, switchgrass, and wheat) with an organsolv process. Organosolv lignins are used as references for analytical methods and in FARE research projects on biological and physico-chemical conversion of lignin. This dataset includes: - 1 file explaining the method; - 1 file summarizing the extraction yield and origin of the lignocellulosic biomass.
DOI: 10.57745/4loizb
title: BDGJ - Bibliometric Dataset on Green Jobs

description: We have developed a bibliometric database centered on the concept of "Green Job", compiling 414 articles from the Scopus and Web of Science databases, focuses exclusively on English-language literature, following a defined protocol, PRISMA, over the period from 1995 to 2022. This endeavor aims to highlight the dynamics, themes, and conceptual approaches shaping the discourse on green jobs. The database, structured around 13 descriptive variables such as authors, keywords, and cited references, is made available to researchers, institutions, and decision-makers to provide insight into the academic debates on ecological transition through the lens of employment, particularly in the wake of a green economy.
DOI: 10.57745/4pxprx
title: gut microbiota 16S sequencing from mice fed different high fat diets

description: Sequencing data of the V3-V4 region of the 16S rRNA gene from DNA extracted of fecal samples from mice fed high fat diets with different lipid composition
DOI: 10.15454/zdaxae
title: Physico-chemical parameters of river water in Nivelle and its tributaries (Pyrénées Atlantiques county - France)

description: The data consist of physico-chemical parameters of river water in Nivelle and its tributaries, collected since 2009. The parameters are water temperature (°C), hydrogen potential (pH), conductivity, turbidity, nitrates (NO3-), ammonium (NH4+) and ortophosphates (PO4 ---). This data is collected as part of the French Environmental Research Observatory (ERO) on Diadromous Fish in Coastal rivers (DiaPFC). ORE DiaPFC is a research infrastructure dedicated to the study of diadromous fish populations under the influence of anthropic pressure (e.g. agriculture) and environmental changes (e.g. climate). The Nivelle is a 39 km long coastal stream of Pays Basque. It has its source in Spain and flows into the Bay of Biscay at Saint-Jean-de-Luz. Its drainage basin has a surface area of 238 km2, and is dominated by marly-calcareous formations. It is essentially agro-pastoral with more than 50% of the land area made of moors (Dumas, 2003). The oceanic climate, mild and wet (1700 mm year-1 in St-Pée-sur-Nivelle), provides a mean annual discharge of 5.4m3/s downstream from the confluence of the main tributary, the Lurgorrieta, and 9m3/s at the mouth.
DOI: 10.57745/2jrrro
title: Replication Data for: Distributed network of smartphone sensors: a new tool for scientific field measurements

description: IMU (Accelerometer, Gyroscope, Magnetometer) data of mechanical waves measured with a smartphone fleet.
DOI: 10.57745/3qft2t
title: French maps for the Global Soil Nutrient and Nutrient Budget Map (GSNmap)

description: This set of maps presents digital maps of soil properties on agricultural lands in France within the FAO framework “Global Soil Nutrient and Nutrient Budgets maps”. The spatial predictions of ten soil properties, namely Total N, available P, CEC, pH (water), Clay, Silt, Sand, Soil Organic Carbon, Bulk density and available K were generated with a 250 m spatial resolution. Random forest machine learning approach in combination with environmental variables was used for spatial distribution assessment of properties. Additionally, uncertainty maps expressed as the standard deviation of spatial predictions were produced. All maps are provided in a raster geotiff format. the identifier of the spatial reference system (srid) is 4326.
DOI: 10.15454/wpr2c9
title: Données de réplication pour : Spatial variations, origins, and risk assessments of polycyclic aromatic hydrocarbons in French soils

description: The French Soil Quality Monitoring Network (RMQS) is a national program for the assessment and long-term monitoring of the quality of French soils. This network is based on the monitoring of 2240 sites representative of French soils and their land use. These sites are spread over the whole French territory (metropolitan and overseas) along a systematic square grid of 16 km x 16 km cells. The network covers a broad spectrum of climatic, soil and land-use conditions (croplands, permanent grasslands, woodlands, orchards and vineyards, natural or scarcely anthropogenic land and urban parkland). The first sampling campaign in France took place from 2000 to 2009. This campaign focused on soil contamination assessment with the measurement of 12 trace metal elements and 70 persistent organic pollutants including Polycyclic Aromatic Hydrocarbons (PAHs). This dataset is based on the measurements of 15 PAHs in 2154 soil samples of the first campaign. It shows the results of data analysis and contains for each site identified by its ID: the concentration of the sum of 15PAHs, the values of four diagnostic ratios (i.e.Flh/(Flh + Py), BaA/(BaA + Chry), Phe/(Phe + Ant) and IdP/(IdP + BghiP)) and the Total Lifetime Cancer Risk (i.e. named TLCR) linked to PAHs contamination of soils. The detailed explanation of the dataset variables can be found in the metadata (.txt) associated to the file table and in the cited publication. In addition, a raster file of the results of the spatialization of 15PAHs in soils (in µg/kg) over France is available in a Geotiff format. The projection system of the raster is Lambert 93 (EPSG:2154).
DOI: 10.15454/ztcn1t
title: WUImap - Logiciel de cartographie des interfaces habitat-forêt

description: WUImap est un logiciel de cartographie des interfaces habitat-forêt. Cet outil est une extension du logiciel ©ESRI ArcGIS Desktop® ArcMap™. Il permet de cartographier les types d’interfaces habitat-forêt définis dans le document, en référence à l’article Lampin-Maillet et al. (2010). Il permet de produire une cartographe des types d’habitat résidentiel. Il ne fonctionne qu’avec une licence valide ArcGIS Desktop® version10.x et une licence pour le module « Spatial Analyst ».
DOI: 10.57745/3lp5en
title: Ensemble des fiches incertitudes des modèles hydrologiques de surface du projet Explore2

description: Ensemble des jeux de donnée par région hydrologique des fiche descriptives des incertitudes du projet Explore2 aux points de simulation Accompagnement de lecture des fiches Incertitudes Le projet Explore2 a produit une quantité inédite de données hydrologiques. Ainsi, des ensembles de projections hydrologiques ont été élaborés sur près de 4000 points de simulation répartis en France hexagonale. Les fiches incertitudes visent à décrire les incertitudes de ces ensembles pour chacun des 3991 points de simulations hydrologiques (surface) obtenus avec la méthode de correction ADAMONT, pour trois indicateurs: QA, QJXA, et QMNA. Les valeurs numériques ne doivent pas être lues sur ces fiches, mais dans les fichiers de données brutes ou d’indicateurs pré-calculés mis à disposition, comme les fiches de synthèse, sur le portail « DRIAS les futurs de l’eau ». Ce document a pour objectif d’expliciter le contenu de ces fiches de synthèse des incertitudes.
DOI: 10.7266/n7cc0xq6
title: Dissolved rare earth elements in the vicinity of the Deepwater Horizon blowout, May 2010-October 2011
DOI: 10.15454/zttqgq
title: Factors influencing the heterogeneity of benthic diatom communities inside natural alpine lakes - Supplementary data

description: This .xlsx file gives the raw data used for the analyses of the paper entitled "Factors influencing the heterogeneity of benthic diatom communities inside natural alpine lakes" - Physical Chemical data: lake names, name of the mountain range, geographical coordinates, chemical measures, lake depth, volume, ... - Diatom lists: microscopic counts - Diatom sp code signification: Omnidia codes given in the diatom lists - Ecol guilds+homogene+Diversity: Ecological guilds abundances in the samples, diversity indices, classes of homogeneity
DOI: 10.57745/1f0ubu
title: Lapex: A new multimodal dataset for context recognition and practice assessment in laparoscopic surgery

description: The LapEx dataset contains 30 videos of sleeve gastrectomy surgeries performed by two surgeons. The videos were captured at 25 fps. Three annotation tasks were performed on the videos of the "dissection of fundus" surgical step : 1. Surgical activites were annotated with the quadruplet &lt; actor , instrument , verb , target &gt; 2. The quality of exposure was annotated with a value in [good, satisfying, unsatisfying] 3. Images were completely segmented with a labeling of visible tools and organs
DOI: 10.57745/1qj3va
title: The mitochondrial orf117Sha gene desynchronizes pollen development and causes pollen abortion in the Arabidopsis Sha CMS. [Supplementary data]

description: This dataset contains parameters and data used for the bioinformatics analysis performed to assemble several Arabidopsis thaliana organelles genomes (mitochondrial and chloroplasts). It contains links to the raw sequencing data (ENA accession), parameters file used to run the mitology assembly pipeline (github link), link to output data (ENA accession), R source code that has been implemented to explore assembly results (github link). See readme.txt for details
DOI: 10.57745/6eaico
title: A dataset of annotated free comments on the sensory perception of madeleines for benchmarking text mining techniques

description: This dataset was created to investigate the impact of data collection modes and pre-processing techniques on the quality of free comment data related to consumers' sensory perceptions. A total of 200 consumers were recruited and divided into two groups of 100. Each group evaluated six madeleine samples (five distinct samples and one replicate) in a controlled sensory analysis laboratory, using different free comment data collection modes. Consumers in the first group provided only words or short expressions, while those in the second group used complete sentences. Additionally, participants reported their liking for each sample.
DOI: 10.57745/3oighb
title: Datasets and scripts about interactive effects of functional traits and site properties on tree growth

description: Data about tree growth and functional traits were compiled. The final dataset contains information about 160 common gardens worldwide, and was used for a scientific publication. Because the scripts that were developed for the study are lengthy (several thousands of rows), only some examples of the used R procedures are presented. Complementary information about data handling and analysis can be requested to authors.
DOI: 10.57745/4byxtk
title: PROspective's long-term field experiment

description: The long-term experiment PROspective site is located at the Colmar Experimental Centre of the French National Research Institute for Agriculture, Food and Environment (INRAE), in Colmar (Haut-Rhin, France; 48◦03’33’’ N, 7◦19’42’’ E, altitude 200 m). It is positioned on a silt–silt clayey calcisol soil. The upper horizon includes a plough layer (i.e., topsoil), which is carbonated. The climate is semicontinental, with a mean annual precipitation of 559 mm received mostly between May and October and an average annual air temperature of 11.3 ◦C. It is cropped with a rotation of maize, winter wheat, sugar beet and barley. Each organic waste product application are made before maize or sugar beat every 2 years most often in February, at doses equivalent to 170 kg N ha−1 (Michaud et al. 2021, Chen et al. 2022). // The figure in attached file presents the experimental plan of the PROspective long-term field experiment. The 2-ha field experiment is divided into 2 sub-devices “With_N” and “Without_N” including 24 plots of 10 m × 9 m in 4 blocks of replicates and a fifth block devoted to the following of the nitrogen dynamic with bare plots or control plots without mineral fertilization. The following organic waste products are randomly distributed within each block: Sewage sludge (SLU), Co-compost of sewage sludge with green waste and wood chips (GWS), Co-compost of the home-sorted fermentable fraction of municipal solid waste and green waste, also called biowaste compost (BIOW), Farmyard manure from a dairy farm (FYM), Compost of farmyard manure (CFYM), No organic amendment (control, or CN). // From 2000 to 2019, two phases were carried out in the PROspective long-term experiment as presented in the attached table, with the treatments randomly distributed in the 2 sub-devices, as follows: In the sub-device “with_N” in 2000–2019 on all plots of the blocks 1 to 4, additional mineral N fertilization was applied at doses between 0 and 170 kg N ha−1. In the sub-device “without_N”, in 2000-2014 on all plots no additional mineral N fertilization was applied; in 2015-2019 additional biowaste digestate (DIG) was applied at doses between 0 and 170 kg N ha−1.
DOI: 10.57745/5lwg4s
title: Electrical conductivity measurement of Expanded Natural Graphite matrix at temperatures between ambient and 200°C

description: Dans ce dépôt se trouvent les résultats de caractérisation des conductivités électriques de matrice à Graphite Naturel Expansé. Ces conductivités, avec les incertitudes associées, sont données sur une plage de température comprise entre l'ambiant et 200°C et pour des densités massiques comprises entre 50 kg/m^3 et 200 kg/m^3 .
DOI: 10.57745/5mde99
title: Dataset from "A new genome assembly of the pea cultivar Cameor provides resources for functional genomics and genetics"

description: This dataset contains the second version of the genome assembly for Pisum sativum genotype "cameor". It also contains RNA-seq data counts and exome capture data recomputed on the second version of the genome.
DOI: 10.57745/2xdj5h
title: Scénarios d’extrêmes hydrologiques

description: Le projet Explore2 a produit un ensemble de projections hydrologiques suivant plusieurs scénarios climatiques pour la France hexagonale. L’objet de ce rapport est de présenter les scénarios d’évolution des extrêmes hydrologiques, concernant les épisodes de pluies intenses, crues, sécheresses météorologiques, agronomiques, hydrologiques, hydrogéologiques et assecs des cours d’eau.
DOI: 10.57745/3rkswi
title: MassiveFold data for target T1278

description: MassiveFold data generated for CASP16, in collaboration with CAPRI . 8040 predictions were generated for the target = 1005 x 8 sets of parameters. - a description of the setup can be found in `MassiveFold_CASP16_Abstract.pdf` - `README.txt` describes the contents of the main `MassiveFold.tar.gz` file - the main `MassiveFold.tar.gz file contains all the predictions, divided into 8 folders named after the conditions. It contains predictions as well as pickle files, sequence alignments, rankings and plots. The README.txt file describes the contents of this tar.gz. - the `only_pdbs_MassiveFold.tar.gz` is the result of the `gather_runs.py` script, without the pickle files. It contains a list of all the pdb files and ranking files with scores. - `gather_runs.py` allows to gather the runs, to use preferentially to the one included in the main `MassiveFold.tar.gz` at the time of the prediction phase, because it has been updated - `combined_scores.csv` file contains the CASP assessment for the target (from https://predictioncenter.org/)
DOI: 10.17180/forest-biomass-map-madagascar-2017
title: Forest biomass for Madagascar

description: A biomass map for Madagascar obtained using the data fusion of LiDAR, optical and other climatic datasets (spatial resolution = 250 m x 250 m). The precision of the map by comparison to field estimates is around 74 Mg/ha.Data years :Lidar spaceborne data (GLAS-ICESat): 2003-2009Optical data: 2000-2010SRTM DEM: 2000Field inventories: 1995-2013
DOI: 10.57745/02odse
title: Colonic transcriptome data DNBS colitis C minuta

description: Fastq files for the transcriptome of colon samples of a DNBS colitis model.
DOI: 10.57745/6gjbib
title: Data for: Cascading effects of landscape, mediated by mesoclimate, on carabid communities and weed seed predation in winter cereals

description: This data repository is associated with the article ‘Cascading effects of landscape, mediated by mesoclimate, on carabid communities and weed seed predation in winter cereals’. It includes both the datasets used (climatic, landscape, agricultural practices and biological data). Below is the abstract of the article: Agricultural intensification, landscape simplification, and climate change threaten biodiversity and ecosystem services in arable lands. Increasing semi-natural habitats and landscape heterogeneity can mitigate these impacts by providing diverse habitats, resources, and modifying mesoclimate. As effective natural enemies in arable lands, carabids play a key role in pest and weed seed regulation and are influenced by field management and landscape. This study hypothesized that field management and landscape factors directly, as well as indirectly (via mesoscale air temperature), influence carabid communities and weed seed predation. We sampled 77 winter cereal fields across 20 landscape windows selected along uncorrelated gradients of semi-natural habitat amount and landscape heterogeneity. We monitored air temperature, carabid communities, and weed seed predation during two sampling periods in late spring and early summer 2023. Piecewise Structural Equation Models were built to test for the direct and indirect effects of local factors (farming practices and standing weeds), landscape and mesoclimate on carabids and weed seed predation. Results showed that the amount semi-natural habitats and landscape heterogeneity primarily influence carabid activity density and composition, which in turn affect weed seed predation. Grasslands, by providing resources and refuges, favour carabids but also increase maximum air temperature, indirectly influencing carabid composition, likely due to thermotolerance traits. In addition, a cascading effect of farming practices on seed predation was also observed in late spring, mediated by carabid activity-density. The study highlights the importance of semi-natural habitats, landscape heterogeneity, and farming practices in shaping carabid communities and their ecosystem services in arable fields. We highlight the influence of the landscape components on mesoscale air temperatures, impacting the species composition of carabid communities and potentially affecting weed regulation services through seed predation.
DOI: 10.57745/2bkspw
title: M. incognita assembled transcriptomes

description: Assemblies of M. incognita transcriptomes from four developmental life stages. We retrieved Minc RNA-seq Illumina data of four developmental life stages (eggs, pre-parasitic J2, J3-J4 and adult female) from a previous publication (Blanc-Mathieu et al. PLoS Genetics, 2017). For each developmental life stage, we pooled the triplicates and performed a de novo transcriptome assembly using Trinity v2.4.062. The assembled tanscriptomes are available in FASTA format.