cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.xld8ws
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cladiocarya E.M.Reid & M.E.J.Chandler, 1926",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 82 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094841-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jz45jg
title: Occurrence Download

description: A dataset listing the 471 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is one of (South America, North America)",
 "TaxonKey is Dendrobatidae"
 ]
}

 The dataset's 471 records were derived from 345 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062240-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wxd95n
title: Occurrence Download

description: A dataset containing 379 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psammechinus miliaris (Gmelin, 1791)"
 ]
}

 The dataset includes 379 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057241-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qcpirb
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neodenticula seminae (R.Simonsen & T.Kanaya) F.Akiba & Y.Yanagisawa, 1986",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094844-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.un3jsp
title: Occurrence Download

description: A dataset containing 168 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Craugastor rostralis (Werner, 1896)"
 ]
}

 The dataset includes 168 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062265-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.886xta
title: Occurrence Download

description: A dataset containing 3818 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Phaethornis bourcieri (R.Lesson, 1832)"
 ]
}

 The dataset includes 3818 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057249-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t8djh5
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Omphalodes mexicana S.Watson",
 "Year is greater than or equal to 1974"
 ]
}

 The dataset includes 9 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094847-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ghgqck
title: Occurrence Download

description: A dataset containing 142 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Craugastor rugosus (Peters, 1873)"
 ]
}

 The dataset includes 142 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062267-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c5p4w7
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psychodopygus panamensis (Shannon, 1926)"
 ]
}

 The dataset includes 35 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057250-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.irl5mo
title: Occurrence Download

description: A dataset containing 660 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gyalidea Lettau",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 660 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094854-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nkysye
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "DatasetKey is srli_global_araneae"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0203425-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p6b8rw
title: Occurrence Download

description: A dataset containing 4112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Phaethornis griseogularis Gould, 1851"
 ]
}

 The dataset includes 4112 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057253-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8jxekt
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neodenticula seminae (R.Simonsen & T.Kanaya) F.Akiba & Y.Yanagisawa, 1986",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-71.22 58.71,-71.22 79.33,38.99 79.33,38.99 58.71,-71.22 58.71))"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094855-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2pm8q4
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "DatasetKey is Descriptions, transference and new records of Lamiinae from Central and South America (Coleoptera, Cerambycidae)"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0203432-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zchpar
title: Occurrence Download

description: A dataset containing 1825 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is EDP Baixo Sabor: Construction and Reservoir Filling Phases - Iberian Wolf (Canis lupus) [Sign surveys] [2010-2014]"
 ]
}

 The dataset includes 1825 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107365-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qoyxh7
title: Occurrence Download

description: A dataset containing 958 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alopecurus saccatus Vasey"
 ]
}

 The dataset includes 958 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094856-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fxyk9n
title: Occurrence Download

description: A dataset containing 118 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Craugastor palenque (Campbell & Savage, 2000)"
 ]
}

 The dataset includes 118 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062239-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3m8er7
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophryosporus apricus B.L.Rob."
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0177104-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s2829p
title: Occurrence Download

description: A dataset containing 1079 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-76.06934 11.25,-78.70605 7.20703,-77.47559 4.92188,-79.32129 1.40625,-73.78418 -1.66992,-69.8291 -3.33984,-69.38965 1.31836,-67.45605 1.58203,-67.9834 6.15234,-71.85059 7.64648,-72.81738 10.10742,-70.70801 12.12891,-71.23535 13.00781,-76.06934 11.25))",
 "HasCoordinate is true",
 "TaxonKey is Didelphis marsupialis Linnaeus, 1758",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1079 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057257-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qawwhm
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Coquillettidia fuscopennata (Theobald, 1903)"
 ]
}

 The dataset includes 18 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002372-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.89kn39
title: Occurrence Download

description: A dataset containing 778 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lophius budegassa Spinola, 1807",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen, Material sample)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 778 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002374-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17028/rd.lboro.28804466
title: Supplementary information files for "Tunable assembly of photocatalytic colloidal coatings for antibacterial applications"

description: Supplementary files for article "Tunable assembly of photocatalytic colloidal coatings for antibacterial applications"<br><br>In this study, evaporation-induced size segregation and interparticle interactions are harnessed to tune the microstructure of photocatalytic colloidal coatings containing TiO<sub>2</sub> nanoparticles and polymer particles. This enabled the fabrication of a library of five distinct microstructures: TiO<sub>2</sub>-on-top stratification, a thin top layer of polymer or TiO<sub>2</sub>, homogeneous films of raspberry particles, and a sandwich structure. The photocatalytic and antibacterial activities of the coatings were evaluated by testing the viability of Methicillin-resistant Staphylococcus aureus (MRSA) bacteria using the ISO-27447 protocol, showing a strong correlation with the microstructure. UVA irradiation for 4 h induces a reduction in MRSA viability in all coating systems, ranging from 0.6 to 1.1 log. Films with TiO<sub>2</sub>-enriched top surfaces exhibit better resistance to prolonged exposure to disinfection and bacterial testing. The remaining systems, nonetheless, present higher antibacterial activity because of a larger number of pores and coating defects that enhance light and water accessibility for the generation and transport of reactive oxygen species. This work establishes design rules for photocatalytic coatings based on the interplay between performance and film architecture, offering valuable insights for several applications, including antibacterial surfaces, self-cleaning/antifogging applications, and water purification.<br><br>© The Author(s) CC BY 4.0
DOI: 10.17028/rd.lboro.28804466.v1
title: Supplementary information files for "Tunable assembly of photocatalytic colloidal coatings for antibacterial applications"

description: Supplementary files for article "Tunable assembly of photocatalytic colloidal coatings for antibacterial applications"<br><br>In this study, evaporation-induced size segregation and interparticle interactions are harnessed to tune the microstructure of photocatalytic colloidal coatings containing TiO<sub>2</sub> nanoparticles and polymer particles. This enabled the fabrication of a library of five distinct microstructures: TiO<sub>2</sub>-on-top stratification, a thin top layer of polymer or TiO<sub>2</sub>, homogeneous films of raspberry particles, and a sandwich structure. The photocatalytic and antibacterial activities of the coatings were evaluated by testing the viability of Methicillin-resistant Staphylococcus aureus (MRSA) bacteria using the ISO-27447 protocol, showing a strong correlation with the microstructure. UVA irradiation for 4 h induces a reduction in MRSA viability in all coating systems, ranging from 0.6 to 1.1 log. Films with TiO<sub>2</sub>-enriched top surfaces exhibit better resistance to prolonged exposure to disinfection and bacterial testing. The remaining systems, nonetheless, present higher antibacterial activity because of a larger number of pores and coating defects that enhance light and water accessibility for the generation and transport of reactive oxygen species. This work establishes design rules for photocatalytic coatings based on the interplay between performance and film architecture, offering valuable insights for several applications, including antibacterial surfaces, self-cleaning/antifogging applications, and water purification.<br><br>© The Author(s) CC BY 4.0
DOI: 10.15468/dl.wvtv2u
title: Occurrence Download

description: A dataset containing 16304 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "GadmGid is IDN.31_1",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 16304 records from 148 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053523-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17829532
title: SpineDL dataset: Spinal Cord Cross-Sections from C57BL/6J Mice

description: Training, validation, and test images of intact (Uninjured/Sham) and moderately contused thoracic spinal cord cross-sections of adult female C57BL/6J mice. Tissue sections are immunostained for NeuN (Rbfox3) and DAPI. This dataset is released in SpineDL paper and it is composed by two parts: 



Structure identification: semantic segmentation of spinal cord regions. Classes: Background (0),  White matter (1),  Ependyma (2), Gray matter (3), Lesioned / damaged tissue (4).

Neuron identification: instance-level identification of neuronal somas. Each instance has a unique integer value.


 

For more detailed information regarding the images, sectioning protocols, and individual animal data, please refer to the attached Excel file: “Image information.xlsx”. The original raw confocal images, along with more extensive documentation, are available on the Open Science Framework (OSF).

Data type: Paired fluorescence microscopy and segmented mask images for spine structures and neurons

Microscopy data type: 2D widefield images (fluorescence) and masks obtained via manual segmentation (see https://osf.io/n32z9 for details on segmentation).

Microscope: Leica high-speed confocal systems (High-Speed Confocal Scanner and Leica TCS SP5) with 20X objective. 

Tissue type: female mouse thoracic spinal cord from injured and uninjured female C57BL6/ mice

File format: .tif (8 and 16 bits) and .xml for neuronal labels in test images

Image size: full spinal cord sections of variable size (up to 5000x5000 pixels). Pixel size: 1.12 to 2.25 µm

Image preprocessing: Original z-stack confocal images were acquired with the LAS-AF 2.3 system and processed in Fiji. Processing included removing non-DAPI/NeuN channels, generating a maximal projection, assigning NeuN to red, and standardizing channel order

Funding bodies: Council of Education, Culture and Sports of the Regional Government of Castilla-La Mancha (Spain), co-funded by the European Union (FEDER)

 

Author(s): Pablo Ruiz-Amezcua (1,5), Daniel Franco-Barranco (2,3,4), David Reigada (1), Teresa Muñoz-Galdeano (1), Rodrigo Martinez Maza (1), Manuel Nieto-Díaz (1)

Contact email: daniel.franco@dipc.org

Affiliation:

1) Hospital Nacional de Parapléjicos (SESCAM). Toledo, Spain2) MRC Laboratory of Molecular Biology, Cambridge, UK3) Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, UK4) Donostia International Physics Center (DIPC), San Sebastián, Spain5) Department of Experimental Biology, University of Jaén, Jaén, Spain

 

Associated publications: In progress
DOI: 10.5281/zenodo.17829531
title: SpineDL dataset: Spinal Cord Cross-Sections from C57BL/6J Mice

description: Training, validation, and test images of intact (Uninjured/Sham) and moderately contused thoracic spinal cord cross-sections of adult female C57BL/6J mice. Tissue sections are immunostained for NeuN (Rbfox3) and DAPI. This dataset is released in SpineDL paper and it is composed by two parts: 



Structure identification: semantic segmentation of spinal cord regions. Classes: Background (0),  White matter (1),  Ependyma (2), Gray matter (3), Lesioned / damaged tissue (4).

Neuron identification: instance-level identification of neuronal somas. Each instance has a unique integer value.


 

For more detailed information regarding the images, sectioning protocols, and individual animal data, please refer to the attached Excel file: “Image information.xlsx”. The original raw confocal images, along with more extensive documentation, are available on the Open Science Framework (OSF).

Data type: Paired fluorescence microscopy and segmented mask images for spine structures and neurons

Microscopy data type: 2D widefield images (fluorescence) and masks obtained via manual segmentation (see https://osf.io/n32z9 for details on segmentation).

Microscope: Leica high-speed confocal systems (High-Speed Confocal Scanner and Leica TCS SP5) with 20X objective. 

Tissue type: female mouse thoracic spinal cord from injured and uninjured female C57BL6/ mice

File format: .tif (8 and 16 bits) and .xml for neuronal labels in test images

Image size: full spinal cord sections of variable size (up to 5000x5000 pixels). Pixel size: 1.12 to 2.25 µm

Image preprocessing: Original z-stack confocal images were acquired with the LAS-AF 2.3 system and processed in Fiji. Processing included removing non-DAPI/NeuN channels, generating a maximal projection, assigning NeuN to red, and standardizing channel order

Funding bodies: Council of Education, Culture and Sports of the Regional Government of Castilla-La Mancha (Spain), co-funded by the European Union (FEDER)

 

Author(s): Pablo Ruiz-Amezcua (1,5), Daniel Franco-Barranco (2,3,4), David Reigada (1), Teresa Muñoz-Galdeano (1), Rodrigo Martinez Maza (1), Manuel Nieto-Díaz (1)

Contact email: daniel.franco@dipc.org

Affiliation:

1) Hospital Nacional de Parapléjicos (SESCAM). Toledo, Spain2) MRC Laboratory of Molecular Biology, Cambridge, UK3) Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, UK4) Donostia International Physics Center (DIPC), San Sebastián, Spain5) Department of Experimental Biology, University of Jaén, Jaén, Spain

 

Associated publications: In progress
DOI: 10.6084/m9.figshare.30884570
title: Data related to STHLM-PathGen from img2img retrieval

description: All data to train and evaluate the model. The model and mean/std for standardization.
DOI: 10.6084/m9.figshare.30884570.v1
title: Data related to STHLM-PathGen from img2img retrieval

description: All data to train and evaluate the model. The model and mean/std for standardization.
DOI: 10.5281/zenodo.17939351
title: Dataset of "Potential-dependent dynamic structure of Pt-Au alloy electrocatalysts"

description: The distribution of metals in alloy nanoparticles is a key parameter in their electrochemical performance. Here, we show that for Pt-Au alloys this distribution dynamically responds to the electrochemical environment. Using electrochemical X-ray photoelectron spectroscopy, we find that the surface composition of the alloy can range from stoichiometric to Pt enriched, depending on the applied potential. The driving factors for this restructuring are the differences in electronegativity and mobility between Pt and Au. At potentials below 1.5 VRHE, the slightly more reactive (less electronegative) Pt shows modest surface enrichment, which slowly increases as the potential is raised and increasingly oxidizing adsorbates are formed. Above 1.5 VRHE, oxidation of the more mobile Au atoms becomes possible, which is kinetically favored over Pt oxidation, thereby driving Au towards the surface. All surface dynamics are found to be highly reversible, even at room temperature. This facile rearrangement suggests that dynamic restructuring of alloy nanoparticles occurs in a wide range of conditions, and should therefore be taken into account in alloy electrocatalyst design.
DOI: 10.5281/zenodo.17939352
title: Dataset of "Potential-dependent dynamic structure of Pt-Au alloy electrocatalysts"

description: The distribution of metals in alloy nanoparticles is a key parameter in their electrochemical performance. Here, we show that for Pt-Au alloys this distribution dynamically responds to the electrochemical environment. Using electrochemical X-ray photoelectron spectroscopy, we find that the surface composition of the alloy can range from stoichiometric to Pt enriched, depending on the applied potential. The driving factors for this restructuring are the differences in electronegativity and mobility between Pt and Au. At potentials below 1.5 VRHE, the slightly more reactive (less electronegative) Pt shows modest surface enrichment, which slowly increases as the potential is raised and increasingly oxidizing adsorbates are formed. Above 1.5 VRHE, oxidation of the more mobile Au atoms becomes possible, which is kinetically favored over Pt oxidation, thereby driving Au towards the surface. All surface dynamics are found to be highly reversible, even at room temperature. This facile rearrangement suggests that dynamic restructuring of alloy nanoparticles occurs in a wide range of conditions, and should therefore be taken into account in alloy electrocatalyst design.