cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5671153.v1
title: Human Herpes Virus 6 (HHV-6): a study of clinical laboratory data and next generation sequencing

description: This is a set of files that supports a study of HHV-6 based in a UK teaching hospital. We first set out to describe the epidemiology of HHV-6 infection in the population of patients identified through clinical laboratory testing, and then to ascertain the extent to which we could identify HHV-6 in other clinical samples submitted to the diagnostic microbiology laboratory.<br> The files uploaded here consist of:<b>(i) HHV-6 cohort: </b>anonymised metadata for the 41 unique patients tested for HHV-6 in a clinical cohort (in both xlsx and csv format).<b>(ii) VS ('viral screening') cohort: </b>anonymised metadata for 100 respiratory and 100 CSF samples collected via the routine clinical diagnostic laboratory and screened for HHV-6 by PCR and NGS (in both xlsx and csv format). <br>This study was approved through the UK integrated research application system (REC reference 14/LO/1077).<br>
DOI: 10.17632/t2z92jvm7s
title: UPI FOMO

description: this data contains raw responses from the study participants
DOI: 10.6084/m9.figshare.19448219.v1
title: The China Plant Trait Database Version 2.0

description: Here we present version 2.0 of the China Plant Trait Database, which contains information on morphometric, physical, chemical, photosynthetic and hydraulic traits from 1529 unique species in 140 sites spanning a diversity of vegetation types. Version 2 has five improvements compared to the previous version: (1) new data from a 4-km elevation transect on the edge of Tibetan Plateau, including alpine vegetation types not sampled previously; (2) inclusion of traits related to hydraulic processes, including specific sapwood conductance, the area ratio of sapwood to leaf, wood density and leaf turgor loss point; (3) inclusion of information on soil properties to complement the existing data on climate and vegetation (4) assessments of the reliability of individual trait measurements; and (5) inclusion of standardized checklists and templates for systematical field sampling and measurements. <br>
DOI: 10.6084/m9.figshare.21118711.v1
title: Uncertainty and emergent constraints on enhanced ecosystem C stock by land greening

description: This fils includes the metadata used to reproduce results in the paper "Uncertainty and emergent constraints on enhanced ecosystem carbon stock by land greening "
DOI: 10.6084/m9.figshare.9638093.v8
title: QM-sym-database

description: 188 kilo molecules together with properties. Please read the 'readme' file for more description before using it.
DOI: 10.17632/8hjdg4x5x2
title: The use of ozone therapy as an adjuvant in the treatment of periodontitis in patients attending the Dr René Puig Bentz Clinic of the Universidad Nacional Pedro Henríquez Ureña.

description: Periodontitis is a chronic inflammatory disease that affects the supporting tissues of the teeth and can lead to tooth loss if not properly treated. Conventional non-surgical treatment is often complemented by the use of antimicrobial mouthwashes such as chlorhexidine. However, its adverse effects and limitations have driven the search for alternatives. This study aimed to evaluate the effectiveness of ozonated water as a mouthwash compared to chlorhexidine in the treatment of periodontitis.

The hypothesis proposed is that the use of ozonated water as a mouthwash, in combination with conventional periodontal treatment, provides clinical results equal to or better than those obtained with chlorhexidine in patients with periodontitis.
The study was conducted on a sample of 50 patients diagnosed with periodontitis, randomly divided into two groups: an experimental group, which used ozonated water as a mouthwash, and a control group, which used 0.12% chlorhexidine. Patients were administered the mouthwash during consultations, both before and after each procedure. The evaluation of clinical parameters included the plaque index, measured using the O’Leary Plaque Index; periodontal pocket depth, determined with the help of periodontal probes; and gingival inflammation, assessed by clinical inspection based on the criteria established by the UNPHU School of Dentistry.
The data showed that the control group experienced a greater reduction in gingival inflammation compared to the experimental group. Regarding the plaque index, the percentage of patients who achieved an optimal level was higher in the control group than in the experimental group. On the other hand, in terms of periodontal pocket depth reduction, the experimental group obtained better results.
These findings suggest that ozonated water can be considered an alternative to chlorhexidine due to its biocompatibility and absence of adverse effects. Its use could contribute to the improvement of clinical parameters; however, its effectiveness still appears to be lower than that of chlorhexidine.
DOI: 10.6084/m9.figshare.22817330.v2
title: <strong>Morphometric variation and operative temperatures of</strong> <em><strong>Crotalus triseriatus</strong></em> <strong>in three Mexican sky islands and its relationship with local environmental variables</strong>

description: This repository has row data from a study evaluating the morphological variation of different populations of Mexican rattesnake to different environmental variables. <br> <br>
DOI: 10.6084/m9.figshare.7873175.v4
title: Chromosome 19 human fasta sequence

description: Chromosome 19 fasta sequencehg38Corresponds to hsa gencode v 29
DOI: 10.6084/m9.figshare.12429347.v1
title: Effects of time averaging on regime-shift detection from Ecological regime shift preserved in the Anthropocene stratigraphic record

description: Palaeoecological data are unique historical archives that extend back far beyond the last several decades of ecological observations. However, the fossil record of continental shelves has been perceived as too coarse (with centennial-millennial resolution) and incomplete to detect processes occurring at yearly or decadal scales relevant to ecology and conservation. Here, we show that the youngest (Anthropocene) fossil record on the northern Adriatic continental shelf provides decadal-scale resolution that accurately documents an abrupt ecological change affecting benthic communities during the twentieth century. The magnitude and the duration of the twentieth century shift in body size of the bivalve <i>Corbula gibba</i> is unprecedented given that regional populations of this species were dominated by small-size classes throughout the Holocene. The shift coincided with compositional changes in benthic assemblages, driven by an increase from approximately 25% to approximately 70% in median per-assemblage abundance of <i>C. gibba</i>. This regime shift increase occurred preferentially at sites that experienced at least one hypoxic event per decade in the twentieth century. Larger size and higher abundance of <i>C. gibba</i> likely reflect ecological release as it coincides with an increase in the frequency of seasonal hypoxia that triggered mass mortality of competitors and predators. Higher frequency of hypoxic events is coupled with a decline in the depth of intense sediment mixing by burrowing benthic organisms from several decimetres to less than 20 cm, significantly improving the stratigraphic resolution of Anthropocene fossil record and making it possible to detect sub-centennial ecological changes on continental shelves.
DOI: 10.6084/m9.figshare.4560760.v1
title: Supplementary Material for: Quality of Life after Intestinal Resection in Patients with Crohn Disease: A Systematic Review

description: <b><i>Background/Aims:</i></b> Most patients with Crohn disease (CD) require surgery within 10 years of diagnosis. Intestinal resection is the most commonly performed operation although the effects on health-related quality of life (HRQOL), particularly long-term, are contentious. <b><i>Methods:</i></b> We conducted a systematic review evaluating the impact of intestinal resection on the HRQOL of CD patients, predictors of postoperative HRQOL, and patient satisfaction with surgery. <b><i>Results:</i></b> Nine studies including 1,108 CD patients undergoing intestinal resection were identified as eligible for inclusion. The median age at surgery was 29-41 years with varying follow-up period (range 30 days-5 years). Ileocolic resection was the most commonly performed operation on an elective basis (range 95-100%). HRQOL improved as early as 2 weeks postoperatively and lasted up to 5 years across both generic and gastrointestinal domains. Gender, smoking, and disease recurrence were potential predictors of postoperative HRQOL. Patient satisfaction is high with regard to surgery, with preference for a laparoscopic approach. <b><i>Conclusion:</i></b> Intestinal resection in CD patients improved HRQOL in the short- and long-term and patients describe high satisfaction about their surgery. Further studies are needed to validate potential predictors of postoperative HRQOL in this cohort.
DOI: 10.17632/9yc97z4tyv
title: INVESTIGATING EVERYDAY SADISTIC CONSUMPTION WITHIN DARK TETRAD

description: This study focuses on the impact of sadism on everyday consumption preferences, i.e., everyday sadistic consumption. An experimental study on a non-WEIRD sample (N=337; Turkish consumers) was conducted on how the traces of sadism can be empirically found in daily consumption behaviors. Intention to visit a touristic destination in which a cruel story presented for the experimental group (vs. control group) analyzed. It is found that sadism initially negatively predicts the intention to visit when controlling for other members of the dark tetrad; however, when a cruel story related to the destination is presented, this negative effect disappears. Further, participants were asked to create a memoir related to the destination as if they visited it. When participants were free to add the cruel story about the destination into the memoir, sadism predicted the intention to add and share the memoir with others when controlling other members of the dark tetrad.
DOI: 10.6084/m9.figshare.19349171.v1
title: 14DatasetsList

description: Number of participants in 14 public sEMG datasets
DOI: 10.6084/m9.figshare.19937879.v2
title: Social Locomotion Model

description: Data supporting the findings from Exp 1 to Exp 13 of manuscript " Human behaviour-based social locomotion model improves the humanization of social robots ". Details about the data are described in the Readme file attached.
DOI: 10.17632/rjwccjgy7z
title: GIS dataset of Italian railway development, 1839-1913 (by Carlo Ciccarelli and Peter Groote)

description: The development of railways in Italy (1839-1913). The geodatabase has been built by Carlo Ciccarelli (University of Rome Tor Vergata) and Peter Groote (University of Groningen). GIS dataset available from ArcGIS online; please click the link. Different formats available for download. https://www.arcgis.com/home/item.html?id=d4fe94faf2e54518b3f421f19a137d4c Use the legend key to see when railway lines were constructed, or to differentiate between standard gauge and narrow gauge or between primary and secondary railways. For more information, see our articles on the construction of the geodatabase: Carlo Ciccarelli & Peter Groote (2017), Railway Endowment in Italy’s Provinces, 1839-1913, Rivista di Storia Economica (ISSN 0393-3415), Fascicolo 1, april 2017; (https://www.rivisteweb.it/doi/10.1410/86763) Carlo Ciccarelli & Peter Groote (2017), The spread of railroads in Italian provinces: a GIS approach, Scienze Regionali - Italian Journal of Regional Science The layers 'lines conecting capitals' and 'junctions' are of no use in the map viewer of ArcGIS online. We advise to keep these switched off. They are added because they are necessary for the use of the network analyst in ArcGIS desktop. Consequently, they are also included in the downloadable versions of the geodatabase. If you are interested in using the underlying geodatabase in ArcGIS desktop 10.X, then download the map package that is available here, the file geodatabase here, or the shapefile (lacks topological characteristics!) here. If you find the data of use, please let us know at carlo.ciccarelli@uniroma2.it and p.d.groote@rug.nl. If you use the data in an article, please quote our articles in Rivista di Storia Economica and Rivista di Scienze Regionali.
DOI: 10.6084/m9.figshare.28254788.v1
title: Deep Learning for the Detection and Classification of Diabetic Retinopathy with an Improved Activation Function

description: Diabetic retinopathy (DR) is an eye disease triggered due to diabetes, which may lead to blindness. To prevent diabetic patients from becoming blind, early diagnosis and accurate detection of DR are vital. Deep learning models, such as convolutional neural networks (CNNs), are largely used in DR detection through the classification of blood vessel pixels from the remaining pixels. In this paper, an improved activation function was proposed for diagnosing DR from fundus images that automatically reduces loss and processing time. The DIARETDB0, DRIVE, CHASE, and Kaggle datasets were used to train and test the enhanced activation function in the different CNN models. The ResNet-152 model has the highest accuracy of 99.41% with the Kaggle dataset. This enhanced activation function is suitable for DR diagnosis from retinal fundus images.
DOI: 10.6084/m9.figshare.1455990.v8
title: A Functional Approach to Violent Radicalization. Building a Systemic Model Based on a Real Case

description: A paradox in the study of violent radicalization is that while each of the empirical findings can be explained from multiple theories, very few theories can explain a relevant number of these findings simultaneously. In this paper functional behavior assessment is applied to violent radical behavior, trying to find out the factors responsible for its initial learning and subsequent maintenance. Specifically, a radicalization model is proposed, which can explain a wide range of observed phenomena, accommodate apparent exceptions, and obtain testable consequences. It also allows challenging some firmly rooted ideas, as the alleged existence of aggressive influence practices, or brainwashing. Finally, the model is also able to provide valuable predictions for subsequent investigation, such as those related to the reversibility of the process of radicalization.
DOI: 10.6084/m9.figshare.5126812.v1
title: Supplementary Material for: Adjusting Hemodialysis Dose for Protein Catabolic Rate

description: <b><i>Background:</i></b> Patients dialyzed with equal eKt/V may have huge variations in their urea concentrations. <b><i>Methods:</i></b> Urea generation rate, distribution volume and renal clearance were determined in 205 hemodialysis sessions of 33 patients with double pool urea kinetic modeling using dialyzer clearance from online monitoring. From these data, optimized prescriptions were computed. <b><i>Results:</i></b> In simulated dialysis sessions, the HEMO standard-dose equivalent clearance was not sufficient to keep time-averaged concentration (TAC) and average predialysis concentration (PAC) of urea below the defined upper limits (20 and 30 mmol/l), if normalized protein catabolic rate (nPCR) was greater than 1.3 g/kg/day. Protein catabolic rate was taken into account in the optimized prescription by cutting high urea concentrations. <b><i>Conclusions:</i></b> If patients having high urea concentrations with conventional clearance will benefit from higher dialysis dose - an unconfirmed hypothesis - this approach helps in identifying those who need more than three sessions per week.
DOI: 10.6084/m9.figshare.27641487.v1
title: Seasonal variations in nitrate concentrations and isotopic compositions in a Tibetan Plateau glacial lake

description: Table S1 presents the NO3- concentrations and isotopic compositions in rainfall, glacier runoff and glacial lake as well as δ18O-H2O in glacial lake within Qiangyong Glacier Watershed.Table S2 presents the monthly mean temperature, monthly mean precipitation and monthly mean discharge within Qiangyong Glacier Watershed.
DOI: 10.6084/m9.figshare.6298397.v3
title: Dressed Primordial Black Hole Binaries - Animations

description: Animations showing the evolution of a binary of two primordial black holes (PBH), each dressed in a local dark matter (DM) halo.<br>The blue points are DM pseudo-particles (M = 3 x 10<sup>-4 </sup>M<sub>sun</sub>), while the white dots (initially obscured) are the PBHs, each with a mass of 30 M<sub>sun</sub>.<br>The pair decouples shortly before matter radiation equality, with an initial semi-major of a = 0.01 pc. The movies show initial eccentricities of e = 0.95 and e = 0.995. <br>Further details can be found at the associated GitHub repo - https://github.com/bradkav/BlackHolesDarkDress.<br>
DOI: 10.6084/m9.figshare.22701355.v1
title: VC3_JansenPhageJ

description: VC3_JansenPhageJ
DOI: 10.6084/m9.figshare.25569459.v1
title: RNAStrAlign

description: Secondary structure prediction for RNAErnie.
DOI: 10.17632/hjp6fchdtx
title: Methodology for soil quality assessment

description: This methodology has been used to calculate soil quality index. Minimum data set was identified after PCA. Then linear scoring was done to calculate the index.
DOI: 10.17632/srpn5sg3ms
title: Robustness and Dynamic Sentiment

description: Replication package for Robustness and Dynamic Sentiment
DOI: 10.6084/m9.figshare.21253455.v1
title: Raw zOTU data per sample

description: <strong>Caterpillar-associated bacterial communities of untreated, starved or starved then external microbiome disrupted (EMD) </strong><em><strong>C. glomerata</strong></em><strong> parasitised or unparasitised caterpillars (</strong><em><strong>P. brassicae</strong></em><strong>) </strong>(1) Both<strong> </strong>external and internal bacterial zOTU count of the different caterpillar samples. (2) External only (3) internal only.
DOI: 10.6084/m9.figshare.28440311.v1
title: Data Mouse Opto

description: Optogenetic Dataset for Russo et al., 2025
DOI: 10.17632/mx33vrmxrv
title: Synthetic Image fire and non-fire dataset

description: This dataset consists of 1,000 AI-generated images, created using a Stable Diffusion model. The images are organized into two distinct folders:

Fire: Contains 500 images depicting synthetic representations of forest fires.
Non-Fire: Contains 500 images showing various forest scenes without any fire activity.
Each image has a resolution of 260x260 pixels, optimized for use in machine learning tasks such as classification, detection, and environmental monitoring.

Purpose
The dataset is intended to aid research and development in areas such as:

Forest fire detection and prevention using AI.
Benchmarking deep learning models for image classification tasks.
Studying the environmental impact of forest fires.
DOI: 10.6084/m9.figshare.13728334.v1
title: Workspace_completed_data_construction_13_June_2020.Rdata

description: R data files for complete analysis-ready workspaces<br>
DOI: 10.6084/m9.figshare.25288459.v1
title: Alignment, Fungal Planet - Macroconia verruculosa

description: Concatenated alignment of ITS, LSU and tef1a regions.
DOI: 10.6084/m9.figshare.5047501.v1
title: s1.docx, s2.dox Xiang-Nan Jiang

description: Primers for the detection of ALK fusion transcripts and <b>summary of immunohistochemical findings</b>
DOI: 10.17632/5wh9bdmnm5
title: Isolated Data Acquisition with Trigger Pulse Generation for Ion Mobility Spectrometry

description: This work presents an isolated data acquisition based on two simultaneous sampled 16-bit ADCs of type LTC1864 (Analog Devices) and the synchronized generation of trigger pulse patterns required for the operation of ion mobility spectrometers.
DOI: 10.6084/m9.figshare.4254275.v1
title: Kenna et al SI Tables.xlsx

description: Supplementary tables for the paper "Antagonistic effects of biological invasion and environmental warming on detritus processing in freshwater ecosystems" by Kenna et al. in Oecologia. <b>Table S1. </b>Temperature at nine points along the temperature gradient measured every 15 minutes over the 45 minute observation period (n=15 observations at each location). <b>Table S2. </b>Control experiments carried out with uniform temperature (20°C) throughout entire track. N=6 specimens of each species used <b>Table S3. </b>Final data for temperature preference experiment - showing all size and weights of individuals and median temperature preferences <b>Table S4. </b>All data from shredding experiments, including animals that were excluded from the analysis due to cannibalism or that moulting (see notes). Sample sizes are n=20 for each species at each temperature.
DOI: 10.6084/m9.figshare.16606580.v1
title: Interactions-DataSet-Upload.xlsx

description: This data set contains a list of all retrieved interactions (up to 2020) between phytophagous insects and ferns (including lycophytes). It contains species names, genera, families and orders of insects (following Tree of Life Web Project, 2002) as well as species names and families of ferns (following PPG I, 2016), the type of interaction, and the country where the interaction has been reported for and the literature reference.
DOI: 10.6084/m9.figshare.23666796.v3
title: Nonstationarity Standardized Precipitation Evapotranspiration Index (NSPEI) dataset

description: The NSPEI dataset contains three types of data, one is based on meteorological station observation data, the second is based on ERA5 grid data, and the third is based on CMIP6 grid data. The dataset with timescales of 1–12 months has been archived in the Network Common Data Form (NetCDF) format. The monthly NSPEI has a spatial resolution of 0.25◦ from 1980 to 2020.
DOI: 10.6084/m9.figshare.28855961.v1
title: Database_Dainellietal2025.xlsx

description: This database gathers all the data used for the ecological study done about the macroinvertebrate diversity in the Buca dei Ladri cave (Tuscany, Italy). These are both environmental variables and data on the presence/absence of the species.<b>Article Title :</b><b> </b>Macroinvertebrate diversity patterns in a guano-rich temperate cave<br><b>DOI :</b><b> </b>10.1007/s10531-025-03077-y<br>49d8841d-315c-4b79-bfdc-d373f273f670<br>
DOI: 10.6084/m9.figshare.28982846.v2
title: Soil physicochemical properties of China

description: This data contains 5 indicators of soil physicochemical properties at soil depths of topsoil (0-30 cm) and deep (30-100 cm). Among them, pH, BD (soil bulk density), CF (soil coarse fragment), Clay (soil clay content) and Sand (soil sand content).This data is from “National Earth System Science Data Center” and was completed by Liu et al. (2022).ReferenceLiu, F., Wu, H., Zhao, Y., Li, D., Yang, J. L., Song, X., Shi, Z., Zhu, A. X., & Zhang, G. L. (2022). Mapping high resolution National Soil Information Grids of China. Science Bulletin, 67(3), 328–340.https://doi.org/10.1016/j.scib.2021.10.013.
DOI: 10.17632/9nwc98947d
title: Data for: The impact of social capital and social interaction on customers' purchase intention considering knowledge sharing in social commerce context

description: data and results are presented
DOI: 10.6084/m9.figshare.9914345.v1
title: GPC of polyproE2

description: GPC data for poly(pro-estrogen)<br>
DOI: 10.5522/04/28538429.v1
title: DFT results for 216-atom cell containing B impurity

description: Acceptor impurities in semiconductors bind a hole from the valence band at low temperatures; at higher temperatures, the hole becomes mobile and contributes to the the electrical conductivity of the p-type material. At long distances the interaction between the (positively charged) hole and the (negatively charged) acceptor core can be approximated by a screened Coulomb interaction, but at short distances there are corrections depending on the local physics of the acceptor. In this project we have calculated those so-called 'central cell corrections' using first-principles density functional theory. These files contain the list of k-points, band structure and electron potential difference (relative to the perfect crystal) for a cubic 216-atom cell containing a single B acceptor and 215 Si atoms.