cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/733by2wy77.2
title: Data set of Single-Chain Fragment Variable (scFv) Antibodies Specific to a Plasma Membrane Epitopes on Bull Y-bearing Sperm

description: Distinguishing between bull Y- and X-bearing sperm populations is advantageous for techniques with sexed bull semen. The aim of this study was to produce a single-chain fragment variable (scFv) antibody against plasma membrane epitopes on bull Y-bearing sperm to distinguish between Y- and X- sperm. Variable heavy (VH) and variable light (VL) region genes generated from a hybridoma cell secreting a specific Y-bearing sperm monoclonal antibody (mAb-1F9) were cloned and expressed. The expected sizes of the DNA bands were ~350 bp for the VH gene and ~318 bp for the VL gene. The VH and VL genes were generated and used to construct an scFv gene (~650 bp) and express the corresponding soluble scFv antibody. Compared with the parent mAb-1F9, the scFv antibodies presented a high affinity for Y-bearing sperm and low cross-reactivity with X-bearing sperm. An immunofluorescence analysis confirmed that the scFv antibodies and mAb-1F9 recognize epitopes on the Y-bearing sperm surface. The fluorescence signal was strong on the plasma membrane of Y-bearing sperm but very weak for X-bearing sperm. This study helps the application and production of engineered scFv antibodies specific to Y-bearing sperm to distinguish between Y- and X-bearing sperm populations for techniques involving sexed bull semen
DOI: 10.17632/c4h9rm5xk6.1
title: Quantum-classical mechanics: On the problem of a two-photon resonance band shape in polymethine dyes

description: Transformation of the theoretical spectra of a model polymethine dye with different deviations from the Egorov resonance condition θ = 1/2 . The black curve describes an optical band corresponding to θ = 0.44, that is near the resonance band corresponding to θ = 1/2, the red curve describes an optical band corresponding to θ = 0.88, that is far beyond the resonance band (shown on different scales).
DOI: 10.17632/ny945rfh3t.4
title: Adenopathy and extensive skin patch overlying a plasmacytoma (AESOP): two morphological variants can be outlined. Supplemental Data.
DOI: 10.17632/79thnmzs8k.1
title: Data for: 3631357

description: The dataset includes 25 patents with the term “Acne” appearing in the claims, 25 patents with the term “Warts” appearing in the claims, 25 patents with the term “Herpes” appearing in the claims, and 25 patents with the term “Impetigo” appearing in the claims. In the aggregate, the dataset provides foundational knowledge for understanding the data patterns found in dermatology patents.
DOI: 10.17632/g959zz7bb2.2
title: Data pertaining to Si deposition via magnetron sputtering for photocatalytic conversion of water-A7-TUD

description: This data was collected during the work on n-Si-thin films fabrication at Forschungzentrum Julich GmbH, Germany (as part of my MS thesis from Technische Universitat Darmstadt, Germany). The research data is focused on successfully depositing n-Si thin films to be used as a tandem-cell, in conjunction with TiO(II), for photocatalytic conversion of water. The research was focused on acquiring the best (optimal) conditions for depositing n-Si thin films, using magnetron sputtering, and to investigate the effect of post-sputtering treatment on the crystallinity of the deposited films (rapid thermal annealing (RTA) and long cycle annealing (AN)). The samples were successfully characterized via Raman Spectroscopy, X-ray Diffraction and Optical Transmission Spectroscopy to ascertain prevalent crystalline order and optical band gap, under different sputtering and post-sputtering conditions. By using the information from these characterization techniques relevant conclusions were drawn to ascertain the best possible deposition parameters to sputter n-Si on a silica substrate. Our results indicated that of the applied two post sputtering processes, namely RTA and AN, AN is preferably more prone to produce a wholly crystalline structure as compared to RTA. Our work also suggests that in order to fabricate crystalline Si thin films, the important processing variable is the post sputtering treatment, preferably long cycle annealing under Ar + H₂ (6%) working gas atmosphere, using temperatures up to 900C, to restrain the loss of Si at higher annealing temperatures. This study also concludes that since the long-range order formed in these samples at low temperatures is micro-crystalline, Raman spectroscopy is much more efficient and competent to assess the degree of crystallinity present in the samples as compared to XRD.
DOI: 10.17632/62rw2j25gx.2
title: Accelerating forest tree breeding by integrating genomic selection and greenhouse phenotyping

description: The dataset is in a R file containing the adjusted phenotypes and the genomic relationship of 473 Populus deltoides genotypes
DOI: 10.17632/yyn3mg8xfv.1
title: Data and do file to replicate Racism and Trust in Europe

description: Data and do file to replicate Racism and Trust in Europe
DOI: 10.17632/2pkhbdgjys.2
title: Validation of Critical Ages in MRI Aging Data

description: Various forms of nonlinear maturation likely reflect different biological mechanisms such that theoretical distinctions between maturation patterns ought to be considered. Code is provided to simulate data with known maturation patterns to establish the level of reliability and validity of a nonparametric fitting method, the smoothing spline. Four categories of maturation patterns are explored: a linear change with a constant maturation rate; U-shaped, with a change in direction across the life span; sigmoidal, with a period of change preceded and followed by no change in volume; accelerating, with changes in amplitude but not direction. As noise is a limiting factor in curve fitting, smoothing splines were fit to data with idealized low noise levels and higher, more realistic noise levels. Using the included analysis code, the smoothing spline can be shown to contain the relevant information to extract the critical ages of all maturation patterns in the form of derivative zero points, but each derivative zero point is only information for certain maturation patterns. Therefore, an additional classification step was included to first determine the category of maturation pattern. The code can be adapted to analyze actual biological data if it is put into the proper format. Run the demo code to see how the code works.
DOI: 10.17632/9pv4z6dns9.1
title: covid-19 and colorectal cancer

description: We describe and suggest the treatment modality of adjuvant and advanced therapies for colorectal cancer during covid-19 era.
DOI: 10.17632/8j2jf9wsrr.1
title: External Knowledge,Innovation and Performance
DOI: 10.17632/k4rbndp3fx.1
title: Survey on lucid dreaming, sleep paralysis, out-of-body experiences, and false awakening

description: The outcome of the survey of 981 respondents on lucid dreaming, sleep paralysis, out-of-body experiences, and false awakening, Moscow, Russia (March 16-17, 2019) Survey The study took place on March 16th and 17th, 2019 in the form of a live survey on the streets of Moscow, Russia. A group of nine assistants was instructed to ask passersby a list of specific questions regarding our study. All the assistants were familiar with LD and were paid a fixed sum in rubles. They asked every passerby to stop for a minute and answer a few questions. If a person agreed, the assistants asked the questions and recorded the participant’s answers. Since this study was a voluntary, non-experimental survey, no ethical approval was needed. We decided to perform a live survey because it allowed us to ask questions to random people and to clarify questions if needed. People who have experienced some forms of PS might not be familiar with specific terms, or they might doubt whether their experience qualifies as PS. Moreover, if we had performed an online survey, people with an interest in LD or OBE might have made a disproportionately large contribution to the results. The inability of respondents to ask questions is a significant drawback of online surveys, and this drawback could have a crucial impact in the case of complicated topics like PS. Questions and personal data The questionnaire contained seven questions, which allowed respondents to provide information about the following: 1 – SD, measured in average number of hours for all days per week. 2 – DM frequency, with the options of ‘never,’ ‘sometimes,’ ‘often,’ and ‘cannot answer.’ 3 – LD frequency, with the options of ‘never,’ ‘once,’ ‘sometimes,’ ‘often,’ and ‘cannot answer.’ 4 – FA frequency, with the same options that were given for the third question. 5 – SP frequency, with the same options that were given for the third question. 6 – OBE frequency, with the same options that were given for the third question. 7 – overall awareness (AW) about practices like lucid dreaming, astral projecting, or OBE, with the options of ‘no,’ ‘yes,’ and ‘cannot answer.’ Four more questions were asked to obtain respondents’ personal information (age, name, gender, and phone number). All the filled-out questionnaires were saved in their original physical form, as scanned copies, and as part of an overall data file. Statistical analysis To create PS data we united LD, OBE, FA, and SP data. If there were at least two ‘yes’ or ‘once’, it was counted as ‘sometimes’ for PS. If there were at least three answers ‘sometimes’, it was counted as ‘often’ for PS. If there were at least one ‘often’, it was counted as ‘often’ for PS.
DOI: 10.17632/g959zz7bb2.3
title: Data pertaining to Si deposition via magnetron sputtering for photocatalytic conversion of water-A7-TUD

description: This data was collected during the work on n-Si-thin films fabrication at Forschungzentrum Julich GmbH, Germany (as part of my MS thesis from Technische Universitat Darmstadt, Germany). The research data is focused on successfully depositing n-Si thin films to be used as a tandem-cell, in conjunction with TiO(II), for photocatalytic conversion of water. The research was focused on acquiring the best (optimal) conditions for depositing n-Si thin films, using magnetron sputtering, and to investigate the effect of post-sputtering treatment on the crystallinity of the deposited films (rapid thermal annealing (RTA) and long cycle annealing (AN)). The samples were successfully characterized via Raman Spectroscopy, X-ray Diffraction and Optical Transmission Spectroscopy to ascertain prevalent crystalline order and optical band gap, under different sputtering and post-sputtering conditions. By using the information from these characterization techniques relevant conclusions were drawn to ascertain the best possible deposition parameters to sputter n-Si on a silica substrate. Our results indicated that of the applied two post sputtering processes, namely RTA and AN, AN is preferably more prone to produce a wholly crystalline structure as compared to RTA. Our work also suggests that in order to fabricate crystalline Si thin films, the important processing variable is the post sputtering treatment, preferably long cycle annealing under Ar + H₂ (6%) working gas atmosphere, using temperatures up to 900C, to restrain the loss of Si at higher annealing temperatures. This study also concludes that since the long-range order formed in these samples at low temperatures is micro-crystalline, Raman spectroscopy is much more efficient and competent to assess the degree of crystallinity present in the samples as compared to XRD.
DOI: 10.17632/xcgc5kpntm.1
title: Metabolic Fingerprinting Links Oncogenic PIK3CA with enhanced Arachidonic Acid-Derived Eicosanoids Koundouros et al.

description: Complete Rapid Evaporative Ionization Mass Spectrometry lipid profiles for breast cancer cell lines and tumor PDX samples.
DOI: 10.17632/8jnbnp5m8f.1
title: Bayesian Hierarchical and Measurement Uncertainty Model Building for Liquefaction Triggering Assessment - Data Supplement

description: This dataset includes the training/testing data and the MCMC draws for model parameters generated by Stan. The result files are titled consistent with the model descriptions in the accompanying paper.
DOI: 10.17632/nny9w27zb3.1
title: Sm2Bi2Fe4O12 ferromagnetic semiconductor

description: Samples of Sm2Bi2Fe4O12 were solid reacted. Structural characterization through the X-ray diffraction technique evidences that the synthesized ceramic crystallizes in orthorhombic structures (Pnma, #62 space group). Micrographs reveal the granular and densified feature on the surface and inside of the samples. Two micrometric and submicrometric grain sizes were mostly observed. X-ray energy dispersion spectra allowed establishing the stoichiometric composition suggested by the chemical formula of the compound. The electrical behavior was studied by means of I-V curves and electrical permittivity as a function of temperature. Results reveal semiconductor-like behaviors with strong influences on the polycrystalline character of the material and a Maxwell-Wagner-type dielectric trend. Diffuse reflectance spectra corroborate the semiconductor feature with optical band gap Eg=2.62 eV. Temperature-dependent magnetization curves for applied fields of 500, 2000 and 10000 Oe show a ferromagnetic characteristic, with strong evidence of disorder causing magnetic irreversibility between the Zero Field Cooling and Field Cooled measurement procedures. The ferromagnetic type ordering was established from the hysteretic character of magnetization curves measured at 50, 200 and 300 K temperatures. Ab-initio calculations of the electronic density of states show the occurrence of a mean semiconducting gap of 2.38 eV produced by hybridizations of orbitals of the nonmetallic cations with the 2p oxygen electrons. 3d-Fe orbitals are responsible by the strong asymmetry between the spin-up and -down polarized states, which gives rise to a high magnetic moment. The increase in applied pressure and temperature produces substantial changes in the thermophysical properties of the material. At low temperatures, the specific heat reveals a trend to the Dulong-Petit limit, which converges to 490.2 J/mol.K. In this temperature regime, changes occur in all the thermophysical properties studied because of the effect of pressure and temperature on the wave behavior of the crystal lattice. At higher temperatures, a strong variation in Debye temperature and divergence between the behaviors of entropy, thermal expansion and Grüneisen parameter for different applied pressures are observed. Based on these results, the material is classified as a ferromagnetic semiconductor with low coercive field and medium saturation magnetization that would have eventual technological implications in the spintronic industry.
DOI: 10.17632/7wn6m5n5kj.1
title: Supplementary Tables for "Factors associated with leaving against medical advice among patients hospitalized for dermatologic conditions"

description: Supplementary Table 1: Trends in patients hospitalized for dermatologic conditions leaving against medical advice over time. Supplementary Table 2: Number of diagnoses, chronic conditions, and procedures by age
DOI: 10.17632/6dmm8659rm.2
title: Dataset of tandem mass spectra for non-halal pork-based food products

description: Shotgun proteomics is a high-throughput proteomic studies that commonly used to establish the peptide markers. Massive amounts of tandem mass spectra will be produced after an LC-MS/MS acquisition, as a consequence of thousands of proteins from several biological samples is digested by an enzyme. Manual interpretation for these massive mass spectra is unfeasible; instead, database search engine is used to match the spectra with sequence information contained in the database. Each search engine has a unique algorithm to provide a list of the best matching peptide sequences, as well as a score that related to the confidence level for an individual tandem mass spectrum. In this dataset, three proteomic database search engines namely Comet, X! Tandem, and ProteinProspector have been used against 45 types of pork-based food products with triplicate each for halal analysis. The dataset can be used to compare and discuss the ability of each database search engine, in term of detected spectra, matched peptide-spectrum, and inferred proteins. A false-discovery rate can also be compared and discussed from this dataset, in respect of database searching. A result of combined database search engine can be generated from this dataset to leverage the information contained in the database during interpretation of massive amounts of tandem mass spectra.
DOI: 10.17632/s3x24k6dky.1
title: Weekly Administration of Brodalumab in Hidradenitis Suppurativa: An Open Label Cohort Study

description: Clinical Trial of Weekly Brodalumab in Hidradenitis Suppurativa
DOI: 10.17632/s3x24k6dky.2
title: Weekly Administration of Brodalumab in Hidradenitis Suppurativa: An Open Label Cohort Study

description: Clinical Trial of Weekly Brodalumab in Hidradenitis Suppurativa
DOI: 10.17632/6t42tbtzz5.1
title: Therapeutic response monitoring after targeted therapy in an orthotopic rat model of hepatocellular carcinoma using contrast-enhanced ultrasound: focusing on inter-scanner, and inter-operator reproducibility

description: The aim of this study was to assess therapeutic response monitoring after anti-angiogenic therapy in an orthotopic rat model of hepatocellular carcinoma (HCC) using CEUS with focusing on inter-scanner and inter-operator reproducibility. For reproducibility, CEUS was performed using two different US scanners by two operators in sixteen rat models of HCC. Using perfusion analysis software (VueBox ®), eleven parameters were collected, and intra-class correlation coefficient (ICC) was used to analyze reproducibility. Then seventeen rat models of HCC were divided into treatment group (n = 8, 30 mg/kg/day sorafenib for five days) and control group (n = 9). CEUS was performed at baseline and 14 days after first treatment, and changes of perfusion parameters were analyzed. In treatment group, CEUS perfusion parameters showed a significant change. The peak enhancement (PE, 2.50 x103±1.68 x103 vs 5.55x102±4.65x102, p = 0.010) and wash-in and wash out AUC (WiWoAUC, 1.07x105±6.48 x104 vs 2.65x104±2.25x104, p = 0.009) had significantly decreased two weeks after treatment. On the contrary, control group did not show a significant change, including PE (1.15 x103±7.53x102 vs 9.43x102± 7.81 x102, p = 0.632) and WiWoAUC (5.09 x104±3.25x104 vs 5.92 x104±3.20x104, p = 0.646). For reproducibility, the various degrees of inter-scanner reproducibility were from poor to good (ICC: &lt;0.01-0.63). However, inter-operator reproducibility of important perfusion parameters, including WiAUC, WoAUC, and WiWoAUC, ranged from fair to excellent (ICC: 0.59-0.93) in a different scanner. Therefore, CEUS was useful for assessment of the treatment response after targeted therapy and with fair to excellent inter-operator reproducibility.
DOI: 10.17632/6t42tbtzz5.2
title: Therapeutic response monitoring after targeted therapy in an orthotopic rat model of hepatocellular carcinoma using contrast-enhanced ultrasound: focusing on inter-scanner, and inter-operator reproducibility

description: The aim of this study was to assess therapeutic response monitoring after anti-angiogenic therapy in an orthotopic rat model of hepatocellular carcinoma (HCC) using CEUS with focusing on inter-scanner and inter-operator reproducibility. For reproducibility, CEUS was performed using two different US scanners by two operators in sixteen rat models of HCC. Using perfusion analysis software (VueBox ®), eleven parameters were collected, and intra-class correlation coefficient (ICC) was used to analyze reproducibility. Then seventeen rat models of HCC were divided into treatment group (n = 8, 30 mg/kg/day sorafenib for five days) and control group (n = 9). CEUS was performed at baseline and 14 days after first treatment, and changes of perfusion parameters were analyzed. In treatment group, CEUS perfusion parameters showed a significant change. The peak enhancement (PE, 2.50 x103±1.68 x103 vs 5.55x102±4.65x102, p = 0.010) and wash-in and wash out AUC (WiWoAUC, 1.07x105±6.48 x104 vs 2.65x104±2.25x104, p = 0.009) had significantly decreased two weeks after treatment. On the contrary, control group did not show a significant change, including PE (1.15 x103±7.53x102 vs 9.43x102± 7.81 x102, p = 0.632) and WiWoAUC (5.09 x104±3.25x104 vs 5.92 x104±3.20x104, p = 0.646). For reproducibility, the various degrees of inter-scanner reproducibility were from poor to good (ICC: &lt;0.01-0.63). However, inter-operator reproducibility of important perfusion parameters, including WiAUC, WoAUC, and WiWoAUC, ranged from fair to excellent (ICC: 0.59-0.93) in a different scanner. Therefore, CEUS was useful for assessment of the treatment response after targeted therapy and with fair to excellent inter-operator reproducibility.
DOI: 10.17632/69kjcwrb7j.3
title: Data for: The Transcriptome Analysis of the Whole-body of the Gastropod Mollusk Limax flavus and Screening of Putative Antimicrobial Peptide and Protein Genes
DOI: 10.17632/7j58kspmyd.2
title: Survey Data on National Election Participation in Nigeria

description: Election participation in Nigeria
DOI: 10.17632/s436cmfk9j.3
title: Data for: Hydrochemical Characterization and Suitability Assessment of Groundwater Quality in the Saboba and Chereponi Districts, Ghana

description: The hydrochemical dataset, comprising both raw and some processed data, used to support the findings of this study are contained in different excel spread sheets of the uploaded excel file.
DOI: 10.17632/s43v934399.1
title: DnaA-dependent riboswitch for transcription attenuation

description: Transcription attenuation has been believed to be controlled by alternative configurations of RNA secondary structures through arresting or releasing the ribosome on the leader RNA molecule in response to limitation or sufficiency of specific amino acid. Here we report the first example of a DnaA-dependent riboswitch for transcription attenuation. We establish that transcription attenuation of the Escherichia coli his operon is regulated by DnaA-dependent alternative configurations of mRNA secondary structures. We show that (i) transcription attenuation of the his operon depends on both DnaA and the HisL-SL RNA; (ii) DnaA binds to rDnaA-boxes of the HisL-SL RNA and subsequently attenuates transcription of the operon; disruptions in these rDnaA-boxes affect both binding affinity for DnaA and subsequent attenuation; (iii) rDnaA-boxes of the HisL-SL RNA are phylogenetically conserved in gram-negative bacteria; (iv) tRNAHis strengthens the attenuation of the his operon, dependent on the presence of both HisL-SL RNA and DnaA; (v) the HisL-SL RNA-mediated control for the his operon is evolutionarily important. We show that a DnaA-dependent riboswitch regulates the his operon attenuation by alternative secondary structures of the HisL-SL RNA depending on binding of DnaA to rDnaA-boxes with assistance of tRNAHis.