cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10715828
title: Dataset related to the article "Head-to-head comparison of four COVID-19 vaccines on platelet activation, coagulation and inflammation. The TREASURE Study."

description: This record contains raw data related to teh article "Head-to-head comparison of four COVID-19 vaccines on platelet activation, coagulation and inflammation. The TREASURE Study."
DOI: 10.5281/zenodo.10715829
title: Dataset related to the article "Head-to-head comparison of four COVID-19 vaccines on platelet activation, coagulation and inflammation. The TREASURE Study."

description: This record contains raw data related to teh article "Head-to-head comparison of four COVID-19 vaccines on platelet activation, coagulation and inflammation. The TREASURE Study."
DOI: 10.6084/m9.figshare.25289347
title: Antibiotic resistance genes

description: Results of antibiotic resistance genes –assemblies’ screening- using Abricate v1.0.1 and Resfinder database (downloaded last 03-27-2023) for 98 CA-MRSA isolates causing infections in children in Spain.
DOI: 10.6084/m9.figshare.25289410
title: Plasmid replicon genes and types

description: Results of plasmid replicon genes –assemblies’ screening- using Abricate v1.0.1 and PlasmidFinder database (downloaded last 03-27-2023) for 98 CA-MRSA isolates causing infections in children in Spain.
DOI: 10.6084/m9.figshare.25298809
title: ST-MLST, <i>spa</i>-types, cgMLST and NCBI AMRFinderPlus (SeqSphere+ v 9.0)

description: Genome assemblies of 98 CA-MRSA isolates causing infections and 19 CA-MRSA isolates from colonization, were uploaded to Ridom SeqSphere+ v 9.0 (Münster, Germany) for a gene-by-gene comparison using a cgMLST scheme of 1,861 targets (https://www.cgmlst.org/ncs/schema/141106/) and to obtain ST-MLST and <i>spa</i>-types.
DOI: 10.6084/m9.figshare.25298845
title: Distance matrix core genome SNP-based analysis

description: Distance matrix of a core genome SNP-based alignment, with a total of 33,169 bp SNP sites, using Snippy v4.6.0 and removing all high SNP density regions with Gubbins.
DOI: 10.6084/m9.figshare.25298872
title: SSCmec typing

description: SSCmec typing was done using staphopia-sccmec v1.0.0 from staph-typer sub-workflow included in Bactopia tools and SCCmecFinder 1.2
DOI: 10.6084/m9.figshare.25298749
title: Assembly report (quast v5.0.2)

description: Genome assemblies quality was assessed using QUAST v5.0.2.
DOI: 10.6084/m9.figshare.25298713
title: Virulence factors (COMER)

description: Results of virulence genes –assemblies’ screening- using Abricate v1.0.1 and Copper and Mercury Resistance (COMER) genes database for 98 CA-MRSA isolates causing infections in children in Spain.
DOI: 10.6084/m9.figshare.25298725
title: Virulence genes (in-house database)

description: Results of virulence genes –assemblies’ screening- using Abricate v1.0.1 and an in-house virulence genes database for 98 CA-MRSA isolates causing infections in children in Spain.
DOI: 10.6084/m9.figshare.25298692
title: Virulence genes (ACME)

description: Results of virulence genes –assemblies’ screening- using Abricate v1.0.1 and Arginine Catabolic Mobile Element (ACME) genes database for 98 CA-MRSA isolates causing infections in children in Spain.
DOI: 10.6084/m9.figshare.25298830
title: RFPlasmid results

description: RFPlasmid v0.0.18 was used to predict chromosomal and plasmid contigs.
DOI: 10.6084/m9.figshare.25298734
title: Agr typing

description: <i>Agr </i>typing of 98 CA-MRSA isolates was done using <i>agrvate</i> v1.0.2 also included in <i>staph-typer</i> subworkflow.
DOI: 10.6084/m9.figshare.25298683
title: Virulence genes (VFDB)

description: Results of virulence genes –assemblies’ screening- using Abricate v1.0.1 and VFDB database (downloaded last 03-27-2023) for 98 CA-MRSA isolates causing infections in children in Spain.
DOI: 10.5281/zenodo.10715784
title: Dataset related to the article "Head-to-Head Comparison of Tissue  Factor-Dependent  Procoagulant Potential of Small and Large Extracellular Vesi-cles in Healthy Subjects and in SARS-CoV-2 Infection"

description: This record contains raw data related to the article "Head-to-Head Comparison of Tissue Factor-Dependent Procoagulant Potential of Small and Large Extracellular Vesicles in Healthy Subjects and in SARS-CoV-2 Infection"
DOI: 10.5281/zenodo.10715785
title: Dataset related to the article "Head-to-Head Comparison of Tissue  Factor-Dependent  Procoagulant Potential of Small and Large Extracellular Vesi-cles in Healthy Subjects and in SARS-CoV-2 Infection"

description: This record contains raw data related to the article "Head-to-Head Comparison of Tissue Factor-Dependent Procoagulant Potential of Small and Large Extracellular Vesicles in Healthy Subjects and in SARS-CoV-2 Infection"
DOI: 10.6084/m9.figshare.25298692.v1
title: Virulence genes (ACME)

description: Results of virulence genes –assemblies’ screening- using Abricate v1.0.1 and Arginine Catabolic Mobile Element (ACME) genes database for 98 CA-MRSA isolates causing infections in children in Spain.
DOI: 10.5281/zenodo.10715707
title: Datase related to the article "Cell surface platelet Tissue Factor expression: regulation by P2Y12 and link to residual platelet reactivity"

description: This record contains raw data related to the article "Cell surface platelet Tissue Factor expression: regulation by P2Y12 and link to residual platelet reactivity"
DOI: 10.5281/zenodo.10715708
title: Datase related to the article "Cell surface platelet Tissue Factor expression: regulation by P2Y12 and link to residual platelet reactivity"

description: This record contains raw data related to the article "Cell surface platelet Tissue Factor expression: regulation by P2Y12 and link to residual platelet reactivity"
DOI: 10.15468/9vd58q
title: 2015_If Ecologie Conseil_1

description: 2015_VCA:If Ecologie Conseil
DOI: 10.26208/xtw7-zk59
title: Remote sensing of source currents of narrow bipolar events using measured electric fields
DOI: 10.15468/65s3p6
title: 2014_Parc Naturel Régional des Baronnies_1

description: 2014_PNRB:Parc Naturel Régional des Baronnies
DOI: 10.15468/dt9hz8
title: LIFE + Desman - Données ANA - CEN Ariège sur le Desman

description: Jeu de données compilant les données collectées par le CEN 09 sur le Desman des Pyrénées dans le cadre du programme Life+ Desman
DOI: 10.15468/w7cf3r
title: 2015_Ecole pratique des hautes études_1

description: 2014_EPHE:Ecole pratique des hautes études
DOI: 10.15468/ejzbkb
title: 2014_Parc National de Port Cros_2

description: resultatsReqSpat_2014_PNPC_2_PHO_m:Parc National de Port Cros
DOI: 10.15468/jyrot0
title: Inventaire des coléoptères saproxyliques de France métropolitaine - Collection de longicornes de Pierre Berger

description: Pierre Berger est l'auteur de la dernière faune de France métropolitaine des Coléoptères Cerambycidae et Vesperidae. A la suite de son décès en 2018, sa collection privée couvrant la faune européenne a été récupérée par Hervé Brustel. Ce jeux de données comprend le début de l'informatisation des données concernant la France (sous-famille des Prioninae).
DOI: 10.15468/hrjwg5
title: Projet éolien de Comps-Lagrand'ville - Amphibiens - Inventaire non standardisé.

description: Liste des insectes patrimoniaux observés dans le cadre des prospections de terrain réalisées au niveau de l'aire d'étude du projet éolien de Comps-la-Granville.
DOI: 10.5519/qd.lj24xgf3
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (970 records)
DOI: 10.15468/89yerk
title: Classic localities of endemic beetles (Coleoptera) from the Western Balkans

description: This resource contains spatial data about classical localities of endemic beetles from the Western Balkans. Data were compiled within the List of Selected Endemic Terrestrial Plant and Animal Taxa of South-East Europe (hereinafter: List of Endemic Taxa of SEE). Support for developing this list was provided by the Open Regional Fund for South-East Europe – Biodiversity (GIZ/ORF-BD), as part of its sub-project „Regional Network for Biodiversity Information Management and Reporting (BIMR)“ funded by the German Federal Ministry for Economic Cooperation and Development (BMZ) and implemented by Deutsche Gesellschaft für Internationale Zusammenarbeit (GIZ) GmbH.
DOI: 10.6084/m9.figshare.25298638
title: Comparative analysis of platelet-derived extracellular vesicles protein extraction methodologies for mass spectrometry

description: The purpose of this study is to present a comparative study of different methodologies for the extraction of platelet derived-extracellular vesicles (pEV) proteins prior to the subsequent mass spectrometry (MS) analysis. pEV were isolated by size exclusion chromatography (SEC) from human platelet lysates (hPL) and characterized by identifying specific markers by western blot, visualizing morphology and size by transmission electron microscopy (TEM) and analyzing concentration and size via nanoparticle tracking analysis (NTA). Protein isolation was performed through three different methodologies based on SDS-polyacrylamide gel electrophoresis (SDS-PAGE), organic solvent precipitation (OSP) or magnetic beads (MB), followed by protein digestion and sample acquisition by LC-MS/MS. Clustering of the samples according to methodology is observed in the principal component analysis (PCA), although no significant differences in terms of normalized abundances are reached. Similarly, a small number of proteins were identified as unique by each methodology, with 91.3 % coincidence among all three procedures. In addition, the bioinformatic results of the enrichment analysis and the numbers of proteins already identified in the Vesiclepedia database are highly similar for the three methodologies. Overall, all three methodologies analyzed are optimal for the extraction of pEV-derived proteins and could be considered according to their intrinsic characteristics in accordance with the research requirements.
DOI: 10.6084/m9.figshare.25298638.v1
title: Comparative analysis of platelet-derived extracellular vesicles protein extraction methodologies for mass spectrometry

description: The purpose of this study is to present a comparative study of different methodologies for the extraction of platelet derived-extracellular vesicles (pEV) proteins prior to the subsequent mass spectrometry (MS) analysis. pEV were isolated by size exclusion chromatography (SEC) from human platelet lysates (hPL) and characterized by identifying specific markers by western blot, visualizing morphology and size by transmission electron microscopy (TEM) and analyzing concentration and size via nanoparticle tracking analysis (NTA). Protein isolation was performed through three different methodologies based on SDS-polyacrylamide gel electrophoresis (SDS-PAGE), organic solvent precipitation (OSP) or magnetic beads (MB), followed by protein digestion and sample acquisition by LC-MS/MS. Clustering of the samples according to methodology is observed in the principal component analysis (PCA), although no significant differences in terms of normalized abundances are reached. Similarly, a small number of proteins were identified as unique by each methodology, with 91.3 % coincidence among all three procedures. In addition, the bioinformatic results of the enrichment analysis and the numbers of proteins already identified in the Vesiclepedia database are highly similar for the three methodologies. Overall, all three methodologies analyzed are optimal for the extraction of pEV-derived proteins and could be considered according to their intrinsic characteristics in accordance with the research requirements.
DOI: 10.5281/zenodo.10402092
title: OntoAgency
title: 1.0

description: OntoAgency is a relational agency-based ontology to understand power relationships. It can be used to trace chains of decision-making, control, ownership and data sharing in design, operation, and policymaking. The ontology if fully compatible with existing BIM, SRI, BRICK and SAREF ontologies and can be retrieved in OWL or RDF formats to be used with the aforementioned ontologies or as stand-alone inside Protégé.
DOI: 10.6084/m9.figshare.25203008
title: LA P-V JAP Supplemental Tables 11-FEB-2024.docx

description: <b>Table S1. Sex-disaggregated participant characteristics at supine rest.</b><b>Table S2. Sex-based comparisons for main endpoints in a semi-upright position.</b>
DOI: 10.5281/zenodo.10708805
title: NMR data for : A solid beta-sheet structure is formed at the surface of FUS droplets during aging
DOI: 10.5281/zenodo.10708806
title: NMR data for : A solid beta-sheet structure is formed at the surface of FUS droplets during aging
DOI: 10.57745/ksa1tu
title: 2_RawData_1617.tab

description: Raw data for the G0_F-4H and G0_T designs evaluated in 2016 and 2017. 24 columns: Design, Id in the field (plot_ID, SBloc, SBloc_X, SBloc_Y, Trial_X and Trial_Y), Hybrid pedigree (CodeHybrid, CodeParentF, CodeParentD), traits values as described in the "TraitDescription.xlsx" file, year and location of the trial.
DOI: 10.15468/zswtk5
title: Amélioration de la protection des îles Piot et Barthelasse contre les crues du Rhône - Chiroptères - Points d'écoute

description: Listes des chiroptères contactées grâce à des points d'écoute au niveau de l'aire d'étude du projet d'amélioration de la protection des îles Piot et Barthelasse contre les crues du Rhône.
DOI: 10.15468/yaybsp
title: 2015_If Ecologie Conseil_4

description: 2015_VCA_4:If Ecologie Conseil
DOI: 10.15468/2864ua
title: 2016_DREAL PACA - N2000 - Métropole Nice Côte d'Azur_1

description: 2016_FR9301550:DREAL PACA - N2000 - Métropole Nice Côte d'Azur:Inventaire DOCOB FR9301550
DOI: 10.15468/xqzwan
title: 2016_DREAL PACA - N2000 - Métropole Nice Côte d'Azur_2

description: 2016_FR9301562:DREAL PACA - N2000 - Métropole Nice Côte d'Azur:Inventaire DOCOB FR9301562
DOI: 10.6073/pasta/5f6d6f902cb72e3680b82514964ceecf
title: Inventory of Eddy Covariance Tower Data in AmeriFlux from Everglades Towers, Florida: 2004-ongoing

description: There are six eddy covariance towers that make continuous measurements of regional hydrology and carbon balance in the region. This long-term eddy covariance tower network includes 2008-ongoing data collection in a freshwater marl prairie (TS/Ph-1; US-Esm) and a freshwater marsh (SRS-2; US-Elm), 2016-ongoing data collection from a mangrove scrub (TS/Ph-7; US-TaS), 2004-ongoing data collection from a tall mangrove forest (SRS-6; US-Skr) and 2020-ongoing data collection from a tower at the ecotone of marl prairie and mangrove scrub (SE1; US-EvM). There is also an aquatic Tower in Florida Bay (Bob Allen; TBD). Everglades ecosystems occur in predictable zonal patterns, and current Florida Coastal Everglades Long Term Ecological Research (FCE-LTER) sites are arranged to capture the variation in hydrology, community composition, and productivity. The hydrology and disturbance regime in the Everglades region developed a rich diversity of communities that have variable capacities to capture and sequester carbon. At each site, open-path infrared gas analyzers (IRGA, LI-7500 and Li-7700, Li-COR Inc., Lincoln, NE) are used to measure CO2 (mg mol-1), water vapor molar density (mg mol-1), and CH4. A paired sonic anemometer (CSAT3, Campbell Scientific Inc., Logan, UT) is employed to measure sonic temperature (Ts; K) and 3-dimensional wind speed (u, v and w, respectively; m s-1). Additional meteorological data is measured at the site to monitor conditions.
 This data package is an inventory of eddy covariance tower data and metadata available through the AmeriFlux repository.
DOI: 10.15468/gvfe5g
title: 2014_BARTH-Environnement_1

description: 2014_Barth-Environnement:BARTH-Environnement:Mission de réalisation d'inventaires naturalistes et du volet milieux naturels de l'étude d'impacts et d'incidence n2000 saint bonnet en champsaur jusquà guinguette RN85
DOI: 10.15468/ga5uve
title: Butterfly Type Specimens at Museum Zoologi Bogor, Indonesia

description: Dataset of butterfly type specimens deposited at Museum Zoologi Bogor, Indonesia
DOI: 10.15468/57smpu
title: Amélioration de la protection des îles Piot et Barthelasse contre les crues du Rhône - Reptiles - Inventaire non standardisé.

description: Liste des reptiles observés dans le cadre des prospections de terrain réalisées au niveau de l'aire d'étude du projet d'amélioration de la protection des îles Piot et Barthelasse contre les crues du Rhône.
DOI: 10.5281/zenodo.10718506
title: Dataset related to article: Reliable virtual clinical assessment in spino-bulbar muscular atrophy (SBMA)

description: Raw Data: Demographics and rating scale results for each individual subject.
DOI: 10.5281/zenodo.10718507
title: Dataset related to article: Reliable virtual clinical assessment in spino-bulbar muscular atrophy (SBMA)

description: Raw Data: Demographics and rating scale results for each individual subject.
DOI: 10.15151/esrf-es-1431868416
title: Protein structure-based design of chemical probes for the m6A-mRNA reader YTHDC1

description: N6-methyladenosine (m6A), the most prevalent internal modification in eukaryotic messenger RNA, plays a crucial role in numerous biological processes. m6A reader proteins, which recognize and interpret these modifications, serve as key mediators in epitranscriptomic regulation. 
Using computational modeling, structure-based drug design, and high-throughput screening techniques we have identified lead compounds against the modulators of m6A. With this proposal we aim to further develop our lead compounds into highly potent and selective chemical probes targeting the nuclear m6A-mRNA reader protein YTHDC1. These chemical probes illuminate protein-RNA interactions, revealing epitranscriptomic regulation mechanisms. By manipulating m6A reader proteins, they enable targeted therapies for diseases driven by dysregulated epitranscriptomic processes.
DOI: 10.15151/esrf-es-1530945024
title: IBS BAG

description: The IBS BAG includes in this proposal IBS teams and external groups from CEA-Cadarache (St Paul lez Durance) and IRBA (Brétigny-sur-Orge). We study structure-function relationships of proteins emphasizing in human health, biotechnology and methodology. Most of the projects are a continuation of the MX-2398 proposal and can be grouped into different topics as follows: host-pathogen interaction, new drug targets, fundamental cellular mechanisms, membrane proteins, biotechnological applications and methodology. Some of these projects use integrative approaches (X-ray crystallography, SAXS, NMR (and cryo-EM), together with other biophysical studies) with the aim to fully understand the complexity of the biological macromolecular systems on study.
DOI: 10.15468/kf2epe
title: 2015_Parc Naturel Régional du Verdon_1

description: 2015_PNRV-Chiro:Parc Naturel Régional du Verdon
DOI: 10.15468/89fq36
title: 2013_LPO PACA_3

description: 2013_LPONat:LPO PACA:PNA Faucon crécerellette
DOI: 10.6084/m9.figshare.25299040
title: mouseMriBrainExtraction.h5

description: network mouse weights
DOI: 10.6084/m9.figshare.25299040.v1
title: mouseMriBrainExtraction.h5

description: network mouse weights
DOI: 10.15468/pmpy5k
title: Amélioration de la protection des îles Piot et Barthelasse contre les crues du Rhône - Amphibiens - Inventaire non standardisé.

description: Liste des amphibiens contactés dans le cadre des prospections de terrain réalisées au niveau de l'aire d'étude du projet d'amélioration de la protection des îles Piot et Barthelasse contre les crues du Rhône.
DOI: 10.6084/m9.figshare.25299037
title: mouseT2wBrainParcellation3DNick.h5

description: network weights mouse<br>
DOI: 10.6084/m9.figshare.25299034
title: mouseT2wBrainExtraction3D.h5

description: mouse network weights<br>
DOI: 10.6084/m9.figshare.25299034.v1
title: mouseT2wBrainExtraction3D.h5

description: mouse network weights<br>
DOI: 10.57932/d7b1d804-aa97-4fd8-9a23-2ff702656bdc
title: QuakeML and sc3ML files for Maurienne seismic swarm

description: This dataset is a seismic event catalog for the Maurienne seismic swarm (2017-2019).
The catalog was produced based on a regional seismological permanent network, and a local temporary network.
It includes:
- 2 localisations for each event: 1) the classical Seiscomp3 location, and 2) the relocation computed using HypoDD, produced for events grouped by clusters. 
- Pick information and magnitudes from Seiscomp3 
- Cluster number 
- Focal mechanisms calculated using the IRIS focmec package, for the 41 largest events (magnitude higher or equal to 2.4).
DOI: 10.57932/6d94c1bf-11a5-4157-90a7-2748ee1f4a94
title: Reportage vidéo sur les essaims de séismes et le projet SISM@LP-Swarm

description: Les Alpes tremblent ! Depuis 1987, plus de 20 000 séismes ont été détectés par le réseau SISmalp. Trois zones sismiques sont particulièrement actives : il s’agit d’essaims sismiques. Ils correspondent à une augmentation localisée de petits tremblements de terre, concentrés dans le temps et dans l’espace. La Vallée de la Maurienne, la Vallée de l’Ubaye et la Vallée de Chamonix sont les essaims sismiques présents dans les Alpes.

S’appuyant sur l’infrastructure du réseau SISmalp, les objectifs du projet SISM@lp-Swarm sont d’analyser de façon approfondie les essaims, de comprendre leurs effets sur les populations et les biens, de co-construire avec les acteurs régionaux et les services de l’état des procédures de surveillance et de gestion des essaims, et de diffuser la connaissance et les informations à destination des différents acteurs.
DOI: 10.5281/zenodo.10709569
title: w0waCDM_gamma_WL
DOI: 10.5281/zenodo.10709570
title: w0waCDM_gamma_WL
DOI: 10.5281/zenodo.10718609
title: w0waCDM_gamma_WL
DOI: 10.17632/yn5f92xzj3.1
title: Predicting tourism recovery from COVID-19: A time-varying perspective

description: The Replication Folder provides the data and codes necessary to replicate the results presented in our paper. For detailed instructions, please refer to the "readme" document included in the folder.
DOI: 10.17632/z5fnkgngdg.1
title: Database - eBd_BHRVez: Floods in the Vez river basin during the 20th and 21st centuries and sustainability

description: The data is part of the research carried out during the doctorate of Gloria Gonçalves, author of the data collection, https://repositorioaberto.uab.pt/handle/10400.2/7981. Its use is only permitted with due citation.The technical sheet of the data set must be consulted in the thesis or through consultation with the author, via email
DOI: 10.17632/z5fnkgngdg.2
title: Database - eBd_BHRVez: Floods in the Vez river basin during the 20th and 21st centuries

description: The data is part of the research carried out during the doctorate of Gloria Gonçalves, author of the data collection, https://repositorioaberto.uab.pt/handle/10400.2/7981. Its use is only permitted with due citation.The technical sheet of the data set must be consulted in the thesis or through consultation with the author, via email
DOI: 10.17632/x6yf64z6wc.1
title: Impact of processing methods on the distribution of mineral elements in goat milk fractions

description: The element concentration in different fractions (fat, casein, whey protein, aqueous phase) of goat milk following heat treatment and homogenization.
DOI: 10.17632/zkfb68cvtm.1
title: Millennial-scale denudation rates and sediment recycling across the Three River Source Region, central Tibetan Plateau

description: Data Availability
DOI: 10.17632/zkfb68cvtm.2
title: Quantifying denudation rates and sediment recycling of low-relief, high-elevation landscapes using in-situ and meteoric cosmogenic nuclides

description: Data Availability
DOI: 10.25835/n4z4sxpn
title: mkbox-project
DOI: 10.17632/35zy6p92f6.1
title: Placental transfer and durability of maternal COVID-19 vaccine-induced antibodies in infants through 6-months of age. Lopez et al.,

description: Code related to the publication "Placental transfer and durability of maternal COVID-19 vaccine-induced antibodies in infants" (Lopez et al., 2023)
DOI: 10.17632/j4rz8nm5nv.1
title: Using Modified VIKOR-GP Approach with Considering the Leopold Matrix Outputs for Optimal Allocation of Wastewater Reuse (Supplementary Materials)

description: Supplementary Data for artocle titled Using Modified VIKOR-GP Approach with Considering the Leopold Matrix Outputs for Optimal Allocation of Wastewater Reuse