cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5683/sp2/i0486t
title: Data from: Caste ratio adjustments in response to perceived and realised competition in parasites with division of labour

description: Abstract1. Colonial organisms with division of labour are assumed to achieve increased colony-level efficiency in task performance through functional specialisation of individuals into distinct castes. In social insects, ratios of individuals in different castes can adjust adaptively in response to external threats. However, whether flexibility in caste ratio also occurs in other social organisms with division of labour remains unclear. Some parasitic trematodes, in which clonal colonies within the snail intermediate host comprise a reproductive caste and a soldier caste, offer good systems to test the general nature of adaptive caste ratio adjustments. 2. Using the trematode Philophthalmus sp. as model, we test whether trematode colonies shift their composition toward more soldiers when exposed to a sustained risk of invasion by a competitor parasite species, and/or when experiencing sustained, active competition. We also quantify the colony-level fitness impact of caste ratio adjustments, measured as the colony’s output of larval infective stages. 3. We conducted two long-term laboratory experiments on within-snail trematode colonies. First, snails harbouring Philophthalmus colonies were exposed to different levels of invasion risk by another trematode species, Maritrema novaezealandense. Second, the structure of Philophthalmus colonies was quantified after a year-long period of within-snail competition with the other trematode species. 4. When facing the risk of invasion by a competitor, independently of the level of risk, Philophthalmus colonies showed a significant shift toward producing more soldiers, resulting in altered caste ratio. Similarly, when experiencing actual competition by another trematode established in the same snail, Philophthalmus colonies also adjusted by producing significantly more soldiers. Greater investments in defense via more soldiers had negative impacts on the establishment and size of the competitor’s colonies. Nevertheless, the presence of the competitor reduced the fitness (output of infective stages) of Philophthalmus colonies, although the production of more soldiers mitigated that effect. 5. Our findings demonstrate that trematode colonies with division of labour are capable of adaptive caste ratio adjustments in response to both the perceived threat of competition, and actual competition, with trade-offs against reproductive success only apparent when soldier numbers are very high. Combined with results on social insects, our study suggests parallel adaptations of colonial organisms in phylogenetically disparate organisms.
DOI: 10.5683/sp2/wksf1q
title: Data from: Catch reconstructions reveal that global marine fisheries catches are higher than reported and declining

description: AbstractFisheries data assembled by the Food and Agriculture Organization (FAO) suggest that global marine fisheries catches increased to 86 million tonnes in 1996, then slightly declined. Here, using a decade-long multinational ‘catch reconstruction’ project covering the Exclusive Economic Zones of the world’s maritime countries and the High Seas from 1950 to 2010, and accounting for all fisheries, we identify catch trajectories differing considerably from the national data submitted to the FAO. We suggest that catch actually peaked at 130 million tonnes, and has been declining much more strongly since. This decline in reconstructed catches reflects declines in industrial catches and to a smaller extent declining discards, despite industrial fishing having expanded from industrialized countries to the waters of developing countries. The differing trajectories documented here suggest a need for improved monitoring of all fisheries, including often neglected small-scale fisheries, and illegal and other problematic fisheries, as well as discarded bycatch.
DOI: 10.5683/sp2/xeivgt
title: Data from: Changes in the bacterial microbiota in gut, blood, and lungs following acute LPS instillation into mice lungs

description: AbstractIntroduction: Previous reports have shown that the gastrointestinal (GI) bacterial microbiota can have profound effects on the lungs, which has been described as the “gut-lung axis”. However, whether a “lung-gut” axis exists wherein acute lung inflammation perturbs the gut and blood microbiota is unknown. Methods: Adult C57/Bl6 mice were exposed to one dose of LPS or PBS instillation (n = 3 for each group) directly into lungs. Bacterial microbiota of the bronchoalveolar lavage fluid, blood, and cecum were determined using 454 pyrotag sequencing and quantitative polymerase chain reaction (qPCR) at 4 through 168 hours post-instillation. We then investigated the effects of oral neomycin and streptomycin (n = 8) on the microbiota at 4 and 24 hours post LPS instillation versus control treatment (n = 5 at baseline and 4 hours, n = 7 at 24 hours). Results: At 24 hours post LPS instillation, the total bacterial count was significantly increased in the cecum (P&lt;0.05); whereas the total bacterial count in blood was increased at 4, 48, and 72 hours (P&lt;0.05). Antibiotic treatment reduced the total bacteria in blood but not in the cecum. The increase in total bacteria in the blood correlated with Phyllobacteriaceae OTU 40 and was significantly reduced in the blood for both antibiotic groups (P&lt;0.05). Conclusion: LPS instillation in lungs leads to acute changes in the bacterial microbiota in the blood and cecum, which can be modulated with antibiotics.
DOI: 10.5683/sp2/ffvzxt
title: Data from: Chlorpyrifos interacts with other agricultural stressors to alter stream communities in laboratory microcosms

description: AbstractChlorpyrifos is one of the most widely used agricultural insecticides in the world, but to date there is limited empirical information about its potential to interact with other common agricultural stressors. We conducted a 15-day, community-level microcosm experiment evaluating individual and combined effects of chlorpyrifos, nutrient enrichment, and sedimentation on stream invertebrate communities (abundance, biomass, richness, size structure, composition) and ecosystem processes (primary productivity and leaf decomposition). We found that sedimentation was the most detrimental stressor, with significant negative impacts on most invertebrate community and ecosystem function variables. Even though chlorpyrifos did not cause significant invertebrate mortality in the microcosms, it still altered ecosystem function by lowering leaf decomposition rates, probably through sublethal inhibition of invertebrate shredders. Furthermore, we observed a significant reversal interaction between chlorpyrifos and sediment for small-sized invertebrates collected in gravel (abundance in sediment x insecticide microcosms was 2.4 times lower than predicted by additivity), as well as an antagonistic interaction with nutrients on invertebrate richness in the same microhabitat (richness in nutrient x insecticide microcosms was 1.6 times higher than predicted by additivity). Our results suggest that chlorpyrifos has the potential to alter freshwater ecosystem function and interact non-additively with other common agricultural stressors. These findings are in keeping with a growing body of research highlighting that multiple stressor interactions and ecosystem processes should be considered when evaluating the impacts of organic toxicants on freshwater ecosystems.
DOI: 10.5683/sp2/aqxe1y
title: Data from: Climate and leaf traits, not latitude, explain variation in plant‐herbivore interactions across a species’ range

description: Abstract1. Spatial variation in abiotic and biotic factors creates local contexts that influence the intensity of plant‐herbivore interactions. Some previous studies have accounted for the complexity of these interactions with latitudinal clines, while the absence of such clines in many other systems suggests other, often unknown, local community factors may instead explain the variation in herbivory across populations. 2. We investigated plant‐herbivore interactions across the entire range of a long‐lived tree (Quercus garryana), evaluating the relative importance of climate, latitude, population size, and insect feeding guilds in determining leaf phenotype and the extent and variation in insect herbivory. In this ecosystem, rain shadows create a nonlinear relationship between climate and latitude, allowing us to disentangle the effects of environmental factors. By performing similar analyses on trees grown in a common garden, we were able to assess the relative importance of environmental factors to leaf defence traits and herbivory. 3. Total herbivory varied significantly among populations, and was best explained by variation in spring precipitation, leaf traits, and tree population size, but not latitude. The relative importance of each of these factors changed over the growing season and with insect feeding guild. Conversely, damage in the common garden did not vary among trees from different origins when grown in a constant environment, leading us to believe variation in damage in natural populations is more likely the result of the local environments. 4. Leaf traits (trichome density and specific leaf area) varied significantly among populations, but neither showed an effect of latitude. Variation in both traits was best explained by tree size, and seasonal temperatures or precipitation. We found no variation in insect diversity among field populations, but abundance varied with mean summer precipitation and population size. 5. Synthesis: Seasonal precipitation consistently explained the geographic variation in the extent of herbivory to Q. garryana, while latitude and winter temperatures, factors that are commonly associated with latitudinal gradients in the intensity of species interactions, did not. Our findings highlight the importance of local climates and functional traits in shaping biotic interactions and intraspecific variation in plant‐insect interactions across large spatial scales.
DOI: 10.5683/sp2/9rf9ku
title: Data from: Climate change impacts on marine biodiversity, fisheries and society in the Arabian Gulf

description: AbstractClimate change - reflected in significant environmental changes such as warming, sea level rise, shifts in salinity, oxygen and other ocean conditions - is expected to impact marine organisms and associated fisheries. This study provides an assessment of the potential impacts on, and the vulnerability of, marine biodiversity and fisheries catches in the Arabian Gulf under climate change. To this end, using three separate niche modelling approaches under a 'business-as-usual' climate change scenario, we projected the future habitat suitability of the Arabian Gulf for 55 expert-identified priority species, including charismatic and non-fish species. Second, we conducted a vulnerability assessment of national economies to climate change impacts on fisheries. The modelling outputs suggested a high rate of local extinction (up to 35% of initial species richness) by 2090 relative to 2010. Spatially, projected local extinctions are highest in the southwestern part of the Arabian Gulf, off the coast of Saudi Arabia, Qatar and the United Arab Emirates (UAE). While the projected patterns provided useful indicators of climate change impacts on the region's diversity, the magnitude of changes in habitat suitability are more uncertain. Fisheries-specific results suggested reduced future catch potential for several countries on the western side of the Arabian Gulf, with projections differing only slightly between models. Qatar and the UAE were particularly affected, with more than a 26% drop in future fish catch potential. Integrating changes in catch potential with socio-economic indicators suggested the fisheries of Bahrain and Iran may be most vulnerable to climate change. We discuss limitations of the indicators and the methods used, as well as the implications of our overall findings for conservation and fisheries management policies in the region.
DOI: 10.5683/sp2/e3ahvq
title: Data from: Climate change increases predation risk for a keystone species of the boreal forest

description: AbstractCanada lynx (Lynx canadensis) and snowshoe hares (Lepus americanus) form a keystone predator-prey cycle that has large impacts on the North-American boreal forest vertebrate community. Snowshoe hares and lynx are both well-suited for snowy winters, but climate change associated shifts in snow conditions could lower hare survival and alter cyclic dynamics. Using detailed monitoring of snowshoe hare cause-specific mortality, behaviour, and prevailing weather, we demonstrate that hare mortality risk is strongly influenced by variation in snow conditions. Although predation risk from lynx was largely unaffected by snow conditions, coyote (Canis latrans) predation increased in shallow snow. Maximum snow depth in our study area has decreased 33% over the last two decades and predictions based on prolonged shallow snow indicate future hare survival could resemble that seen during population declines. Our results indicate that climate change could disrupt cyclic dynamics in the boreal forest.
DOI: 10.5683/sp2/vnvwpv
title: Data from: Climate change is projected to outpace rates of niche change in grasses

description: AbstractClimate change may soon threaten much of global biodiversity, especially if species cannot adapt to changing climatic conditions quickly enough. A critical question is how quickly climatic niches change, and if this speed is sufficient to prevent extinction as climates warm. Here, we address this question in the grass family (Poaceae). Grasses are fundamental to one of Earth's most widespread biomes (grasslands), and provide roughly half of all calories consumed by humans (including wheat, rice, corn and sorghum). We estimate rates of climatic niche change in 236 species and compare these with rates of projected climate change by 2070. Our results show that projected climate change is consistently faster than rates of niche change in grasses, typically by more than 5000-fold for temperature-related variables. Although these results do not show directly what will happen under global warming, they have troubling implications for a major biome and for human food resources.
DOI: 10.5683/sp2/jhc21s
title: Data from: Climate impacts on the ocean are making the Sustainable Development Goals a moving target traveling away from us

description: Abstract1. Climate change is impacting marine ecosystems and their goods and services in diverse ways, which can directly hinder our ability to achieve the Sustainable Development Goals, set out under the 2030 Agenda for Sustainable Development. 2. Through expert elicitation and a literature review, we find that most climate change effects have a wide variety of negative consequences across marine ecosystem services, though most studies have highlighted impacts from warming and consequences to marine species. 3. Climate change is expected to negatively influence marine ecosystem services through global stressors – such as ocean warming and acidification – but also by amplifying local and regional stressors such as freshwater runoff and pollution load. 4. Experts indicated that all Sustainable Development Goals would be overwhelmingly negatively affected by these climate impacts to marine ecosystem services, with eliminating hunger being among the most directly negatively affected Sustainable Development Goal. 5. Despite these challenges, the Sustainable Development Goals aiming to transform our consumption and production practices and develop clean energy systems are found to be least affected by marine climate impacts. These findings represent a strategic point of entry for countries to achieve sustainable development, given that these two goals are relatively robust to climate impacts and that they are important pre-requisite for other Sustainable Development Goals. 6. Our results suggest that climate change impacts on marine ecosystems are set to make the Sustainable Development Goals a moving target traveling away from us. Effective and urgent action towards sustainable development, including mitigating and adapting to climate impacts on marine systems are important to achieve the Sustainable Development Goals, but the longer this action stalls the more distant these goals will become.
DOI: 10.5683/sp2/lzmauf
title: Data from: Climatic change only stimulated growth for trees under weak competition in central boreal forests

description: Abstract1. Global change ecologists have often used trees under weak competition (e.g., dominant/codominant trees) to examine relationships between climatic change and tree growth. Scaling up these results to a forest relies on the assumption that the climatic change-tree growth relationship is not affected by tree-level competition. 2. Using permanent sample plot data from the central Canadian boreal region where warming did not result in water deficit, we tested the above-mentioned assumption by looking at whether the relationship between climatic change and tree growth varied with tree-level competition, which was quantified using a modified Hegyi competition index. 3. We found that tree growth increased over time for trees under weak competition, but decreased for those under strong competition. The divergent temporal trends among trees under different levels of competition led to a non-significant change in growth for our study plots. Growth increased with regional warming, atmospheric [CO2] and water availability for trees under weak competition, but not for those under strong competition. 4. Synthesis. Our results suggest that upscaling the growth responses of dominant/codominant trees to climate change to a forest or a region can lead to biased estimates. Tree-level competition should be taken into account when expressing climatic change and tree growth relationships.
DOI: 10.5683/sp2/41qbpg
title: Data from: Cline coupling and uncoupling in a stickleback hybrid zone

description: AbstractStrong ecological selection on a genetic locus can maintain allele frequency differences between populations in different environments, even in the face of hybridization. When alleles at divergent loci come into tight linkage disequilibrium, selection acts on them as a unit and can significantly reduce gene flow. For populations interbreeding across a hybrid zone, linkage disequilibria between loci can force clines to share the same slopes and centers. However, strong ecological selection on a locus can also pull its cline away from the others, reducing linkage disequilibrium and weakening the barrier to gene flow. We looked for this ‘cline uncoupling’ effect in a hybrid zone between stream resident and anadromous sticklebacks at two genes known to be under divergent natural selection (Eda and ATP1a1) and five morphological traits that repeatedly evolve in freshwater stickleback. These clines were all steep and located together at the top of the estuary, such that we found no evidence for cline uncoupling. However, we did not observe the stepped shape normally associated with steep concordant clines. It thus remains possible that these clines cluster together because their individual selection regimes are identical, but this would be very surprising given their diverse roles in osmoregulation, body armor and swimming performance.
DOI: 10.5683/sp2/ntlqcu
title: Data from: Coexistence and origin of trophic ecotypes of pygmy whitefish, Prosopium coulterii, in southwestern Alaskan lake

description: AbstractEcologically, morphologically, and genetically distinct populations within single taxa often co-exist in postglacial lakes and have provided important model systems with which to investigate ecological and evolutionary processes such as niche partitioning and ecological speciation. Within the Salmonidae, these species complexes have been well studied, particularly within the Coregonus clupeaformis-C. laveratus (lake and European whitefish, respectively) group, but the phenomenon has been less well documented in the other whitefish genera, Prosopium and Stenodus. Here, we examined the morphology, feeding biology, and genetic structure of three putative forms of the pygmy whitefish, Prosopium coulterii, that were first reported from Chignik Lake, southwestern Alaska, over 40 years ago. Field collections and morphological analyses resolved a shallow water (&lt; 5 m depth) low gill raker count form (&lt; 15 first arch gill rakers), a deepwater (&gt; 30 m), low gill raker form, and a deepwater, high gill raker count (&gt; 15 gill rakers) form. The two low gill raker count forms fed almost exclusively on benthic invertebrates (mostly chironomids), while the deepwater, high gill raker count form fed almost exclusively on zooplankton, differences in diet that were also reflected in differences both in δ13C and δ15N stable isotopes. All three forms were characterized by the same major mitochondrial DNA clade that has been associated with persistence in, and postglacial dispersal from, a Beringian glacial refugium. Analysis of variation at nine microsatellite DNA loci indicated low, but significant differentiation amongst forms, especially between the two low gill raker count forms and the high gill raker count form. The extent of differentiation along phenotypic (considerable) and genetic (subtle) axes amongst the Chignik Lake forms is similar to that found amongst distinct taxa of Prosopium found in pre-glacial Bear Lake (Utah-Idaho, USA) which is probably at least ten times older than Chignik Lake. Our analyses illustrate the potential for the postglacial differentiation in traits subject to divergent natural selection across variable environments.
DOI: 10.5683/sp2/msfrm4
title: Data from: Cognitive function after spinal cord injury: a systematic review

description: AbstractObjective: To systematically examine the incidence of cognitive impairment in individuals with spinal cord injury (SCI), as well as identify potential contributing and confounding factors. Methods: Studies quantitatively reporting cognitive ability after spinal cord injury were searched electronically via Medline, CINAHL, Embase, and PsycINFO. Manual screening for references within articles was also performed. A total of 2,481 studies were screened and a total of 70 were included in this review, 21 reporting cognitive function after SCI compared to an able-bodied control group and 49 with no able-bodied controls. Studies were analyzed for the incidence of impairment and the interactions with concomitant traumatic brain injury, psychological or somatic complaints, decentralized cardiovascular control, sleep apnea, neurologic level of injury, and age. Results: There is a high volume of evidence reporting substantial cognitive impairment in individuals with SCI. Potential co-contributors include concomitant brain injury, psychological or somatic comorbidities, decentralized cardiovascular control, and sleep apnea. Cognitive functioning was negatively correlated with age. No clear agreement was found for the incidence of cognitive impairment or its association with level of injury. Conclusion: Current evidence suggests that individuals with SCI should be examined and addressed for cognitive impairment. Future studies aimed at identifying potential secondary causative factors should employ stringent controls for co-occurring brain trauma since it appears to be a major contributor and confounder to impaired cognition.