cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21963/12672
title: One Voice, Methods Development on Inuit Qaujimajatuqangit Data Collection (NGMP ID LU11)

description: Methods development as part of this study focuses exclusively on Inuit Qaujimajatuqangit from the Baker Lake Basin in this first year of the program. This phase (one) of the One Voice project has focused on identifying and analyzing the existing sources of documented and available Traditional Knowledge and Inuit Qaujimajatuqangit related to the watershed of Baker Lake including that pertaining to water quantity, quality and flow, fish species and fishing livelihoods and other aquatic life. Existing documents describing traditional knowledge assessments of the freshwater environment in the Baker Lake Basin and Hudson Bay ("Voices from the Bay") were reviewed. Interviews with key Inuit Qaujimajatuqangit holders were conducted to document observations of the aquatic environment, and Verify previously documented information with current local experts. Experts will come from Baker Lake including Elders and the Hunters and Trappers Organization. Preliminary methods were developed based on the interviews and the existing documents. Confirmation interviews were conducted with the key Inuit Qaujimajatuqangit holders to make sure we correctly interpreted observations from the first set of interviews and to ask more detailed questions. Final methods were developed to describe the aquatic environment, creating "One Voice" from both Inuit Qaujimajatuqangit and Western Science. (These are reports, "One Voice" and "One Voice Verification Interview Report". There is no data. Complete interview transcripts were given to the Kivalliq Inuit Association (KIA) and are considered proprietary and confidential.)
description: This phase (one) of the One Voice project has focused on identifying and analyzing the existing sources of documented and available Traditional Knowledge and Inuit "Qaujimajatuqangit" related to the watershed of Baker Lake including that pertaining to water quantity, quality and flow, fish species and fishing livelihoods and other aquatic life.
DOI: 10.15468/dl.bgfzd9
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001542-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fqovle
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001548-150221044754056/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.skrx9s
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001543-150410134957023/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ylhkfg
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is df42f5ff-36b0-43a6-a19b-389616ba6e28"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001543-150422101436696/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/f7z31xnd
title: Sequoia foliage dieback data from Sequoia National Park

description: These datasets provide spatially-explicit estimates of the magnitude of giant sequoia foliage dieback along selected trail corridors in Sequoia and Kings Canyon national parks, California, from 2014 through 2017. They additionally provide giant sequoia tree-ring measurements, through the year 1989, for two locations in the Giant Forest grove, Sequoia National Park, California.
DOI: 10.34740/kaggle/dsv/8685681
title: US$ exports by state to Dominican Republic
DOI: 10.21963/13091
title: Deterioration data collected from 'Petermann Ice Island-A-1-f' while grounded near Qikiqtarjuaq, Nunavut, 2015 - 2017

description: A data collection program was carried out between October 2015 and September 2017 to monitor the thinning and overall deterioration of “Petermann Ice Island (PII)-A-1-f”. This large, tabular iceberg was a fragment of the 2012 Petermann Glacier calving event. Four field teams visited the ice island, and a stationary ice penetrating radar (sIPR) was installed on PII-A-1-f in October 2015 while the large, tabular iceberg was grounded near Qikiqtarjuaq, NU. The instrument was designed by Blue Systems Integration, Ltd. and was installed during the annual ArcticNet research cruise on board the CCGS Amundsen. It collected the first field dataset of ice island thinning, and along with surface ablation observations, the data were used to calibrate a forced-convection basal ablation model. Mobile IPR data were repeatedly collected over 2.4 km to assess the spatial variation in thinning and assess how well the sIPR measurements represented the conditions elsewhere on the ice island. Auxiliary data included photos, ablation stake measurements, sonic ranger recordings, air temperature measurements, GPS locations, and RADARSAT-2 synthetic aperture radar (SAR) imagery. The latter were collected to monitor the surface areal extent of the ice island. The dataset contains: IPR measurements (.h5), GPS data collected along the mIPR transect (.csv), image files of ablation stakes (.jpg), air temperature data, sonic ranger measurements, and GPS positions of the weather station (.csv), georeferenced Fine-Quad (8 m nominal resolution) RADARSAT-2 SAR images (.tif) and polygon shapefiles delineating the areal extent (.shp).
description: There are limited field observations of the deterioration of ice islands (large, tabular icebergs) due to the difficult nature of data collection. A comprehensive monitoring program was carried out between October 2015 and September 2017 to monitor the deterioration of "Petermann Ice Island(PII)-A-1-f". The ice island was grounded near Qikiqtarjuaq, NU, over the monitoring period. Stationary and mobile ice penetrating radar data were collected to analyze the respective temporal and spatial variation ice island thinning. Auxillary data were collected to analyze surface and basal ablation, calibrate a popular iceberg basal ablation model, and monitor the surface areal extent of the ice island to determine the relative contributions of different processes to the overall deterioration of an ice island. These data can also be used for surface ablation model validation and 3D deterioration modelling efforts. The following manuscript, which utilized this dataset, is in preparation: Crawford, A.J., Mueller, D.R., Crocker, G., Mingo, L., Desjardins, L,. Dumond, D., Babin, M. Ice island thinning: Rates and model calibration with in situ observations from Baffin Bay, Nunavut. The Cryosphere. In preparation.
DOI: 10.21963/12667
title: Investigation of the Toxic Effects of Mercury in Landlocked Arctic Char

description: Data collected from landlocked char in northern Canada and Greenland indicates that 30 percent of the populations surveyed exceed toxicity thresholds for Hg in fish. Collections were conducted in cooperation with the char "core" monitoring project led by Derek Muir. The lakes sampled (Small, 9-mile, North, Amituk) span a gradient of Hg contamination, allowing for the comparison of biological endpoints in char with low Hg concentrations to char with high Hg concentrations. Endpoints relate to reproduction, oxidative stress biomarkers, and general health.
description: Mercury (Hg) causes toxic effects in fish. In northern Canada, and especially Nunavut, Hg concentrations can be high in predatory fish, including landlocked Arctic char. In 2015, landlocked char were collected from lakes on Cornwallis Island, as part of an ongoing project, to determine whether wild populations are indeed experiencing Hg toxicity. The project goes beyond documenting Hg concentrations in fish and will provide critical knowledge concerning the status of fish health, and because Indigenous populations rely on Arctic ecosystems, information about the health of these ecosystems will be pertinent to these communities.
DOI: 10.15784/601797
title: Glacial Climate Intervention: A Research Vision

description: This document represents a white paper that articulates a perspective on future research directions based on discussions of glacial climate intervention held at workshops at the University of Chicago (2–3 October 2023) and Stanford University (8–9 December 2023), and at an American Geophysical Union town hall (12 December 2023). Opinions expressed here are those of the authors only and do not necessarily reflect opinions held by all attendees of the workshops and town hall.
DOI: 10.21963/12990
title: Devon ice cap glacier velocity map

description: The purpose of this dataset was to determine the flow rates of the Devon Ice Cap, Nunavut, Canada during the International Polar Year (2007-2008) and compare the glacier velocities determined with those of previous studies in order to determine whether glacier velocities had changed significantly from the mid-1990s. This dataset was also combined with measured and modelled ice thicknesses at the termini of outlet glaciers in order to determine how much ice was lost via discharge to the ocean (i.e. iceberg production).
DOI: 10.15784/601799
title: Mount Overlord, northern Victoria Land. Age, mineralogical and geochemical data

description: Ar/Ar age dates, electron microprobe analyses of mineral phase and geochemical analyses of rock samples are presented for samples collected at Mount Overlord and surrounded areas in northern Victoria Land, Antarctica.
DOI: 10.5281/zenodo.11506420
title: Draft genome and annotation of Raphidonema monicae

description: Microalgae synthesize diverse lipids that perform a wide variety of structural, metabolic, and signalling roles in the cell. However, we know relatively little about lipid metabolism across different protist groups, and especially those adapted to extreme environments. As part of a project to investigate the lipid metabolism of Raphidonema monicae strain SAG 2030, a cold-adapted microalga isolated from Antarctica, a draft genome was assembled and annotated.

The genome was assembled from a single DNA library sequenced with Illumina 150 bp paired-end reads and assembled by NovoGene (Hong Kong) with SOAPdenovo2. Novogene also perfomed curation and structural annotation of CDS and peptide sequences. The data were subsequently functionally annotated in our lab using BlastP, InterProScan and emapper.py, and the results were curated with OmicsBox software.

The assembly sequence and annotation are provided as data files supporting the lipidomic investigation of the effects of abiotic stress and include the following:

File 1. ‘KAD1.seq’ is the assembled genome sequence contigs that have been curated by NovoGene, .fasta format.

File 2. ‘KAD1.gff’ is the annotation file .gff format for the gene CDS, .gff format.

File 3. ‘KAD1.cds’ contains the CDS nucleotide sequences, .fasta format.

File 4. ‘KAD1.pep’ The corresponding peptide sequences, .fasta format.

File 5. ‘kad.annotation.table.xls’ is the combined functional annotation of the peptide sequences using BlastP, InterProScan and Emapper.py in an excel-readable table format.
DOI: 10.5281/zenodo.11506421
title: Draft genome and annotation of Raphidonema monicae

description: Microalgae synthesize diverse lipids that perform a wide variety of structural, metabolic, and signalling roles in the cell. However, we know relatively little about lipid metabolism across different protist groups, and especially those adapted to extreme environments. As part of a project to investigate the lipid metabolism of Raphidonema monicae strain SAG 2030, a cold-adapted microalga isolated from Antarctica, a draft genome was assembled and annotated.

The genome was assembled from a single DNA library sequenced with Illumina 150 bp paired-end reads and assembled by NovoGene (Hong Kong) with SOAPdenovo2. Novogene also perfomed curation and structural annotation of CDS and peptide sequences. The data were subsequently functionally annotated in our lab using BlastP, InterProScan and emapper.py, and the results were curated with OmicsBox software.

The assembly sequence and annotation are provided as data files supporting the lipidomic investigation of the effects of abiotic stress and include the following:

File 1. ‘KAD1.seq’ is the assembled genome sequence contigs that have been curated by NovoGene, .fasta format.

File 2. ‘KAD1.gff’ is the annotation file .gff format for the gene CDS, .gff format.

File 3. ‘KAD1.cds’ contains the CDS nucleotide sequences, .fasta format.

File 4. ‘KAD1.pep’ The corresponding peptide sequences, .fasta format.

File 5. ‘kad.annotation.table.xls’ is the combined functional annotation of the peptide sequences using BlastP, InterProScan and Emapper.py in an excel-readable table format.
DOI: 10.5517/ccdc.csd.cc2g9857
title: CCDC 2273018: Experimental Crystal Structure Determination

description: Related Article: Lu Yang, Nuan Song, Daopeng Zhang, Suna Wang, Zhen Zhou|2023|Inorg.Chem.|62|17705|doi:10.1021/acs.inorgchem.3c02331
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25345/c51n7xz6n
title: MassIVE MSV000095040 - Photocatalytic proximity labeling identifies transient phagocytic surfaceome
title: Phagocytosis is a critical function of our innate immune system, usually carried out by professional phagocytic cells in the context of pathogen response or wound healing. In recent times phagocytosis has seen renewed interest due to the potential to leverage professional phagocytic cells, such as macrophages, for novel cellular therapeutics. Elucidating surface proteins involved in phagocytosis remains a longstanding challenge, and tools to elucidate the proteins that regulate this process could lead to new therapeutic insights. Herein, we describe a novel photocatalytic proximity labeling method for spatiotemporal mapping of phagocytic processes, specifically those mediated by the FC receptor. By appending a photocatalyst to IGG-opsonized polystyrene beads and initiating phagocytosis in a synchronized manner, we successfully capture pre- , active, and post- phagocytic interactomes at the interface of the phagocyte and its target. We apply this technology to study the dynamic surface proteome of human macrophages during the engulfment process, revealing previously known phagocytic mediators as well as potential novel interactors. We then validated the presence of several proteins in the phagocytic cup discovered by MS via superresolution microscopy. Further, we demonstrate that knocking down F11R, one of said identified proteins, leads to an increased degree of phagocytosis. Lastly, we demonstrated that our platform is amendable to capture orthogonal phagocytic surfaceomes across different cells. We believe this method will be highly enabling to discover and interrogate proteins that govern phagocytic processes in a variety of contexts.
DOI: 10.5066/p94aoszq
title: MODFLOW 6 models for assimilating remote sensing evapotranspiration in ensemble-based framework to enhance cascade routing and re-infiltration concept in integrated hydrological models applied to support decision making

description: This data release contains MODFLOW 6 integrated hydrological model (IHM) that helps characterize the groundwater/surface-water interaction within the Sardon Catchment of western Spain. The model was used to quantify and reduce the overall model uncertainty to improve its reliability as a Decision Support Modeling (DSM) tool by improving the conceptualization and simulation of the overland flow process. The model was calibrated to groundwater heads, surface flows at the outlet of the model, and remotely sensed evapotranspiration data collected by the MODIS satellite. To help constrain the roughly 500,000 estimated parameters, observations of "actual" evapotranspiration (ET) were obtained from the remotely sensed MODIS-ET product, an atypical calibration target. The MODIS-ET observations complemented the more traditional hydraulic heads and streamflow observations, yielding approximately 150,000 total observations for calibration. The data assimilation was carried using the PEST++ iterative ensemble smoother (IES). As discussed in the accompanying model documentation, including the MODIS-ET observations improved the cascade routing and re-infiltration (CRR) implementation, and subsequently reduced the uncertainties associated with other model parameters. Additionally, it significantly reduced the uncertainties of fluxes of interest, specifically the net recharge, a critical flux for water management which is not easily measured and is typically a modeled quantity within most IHM simulations that is of particular interest. This USGS data release contains all the input and output files for the simulations described in the associated journal article (https://doi.org/10.1016/j.jhydrol.2024.131411).
DOI: 10.21430/rv23-wr13
title: The 10,000 Immunomes Project: Building a Resource for Human Immunology

description: The 10,000 Immunomes Project is a reference dataset for human immunology, derived from over 10,000 control subjects in the NIAID ImmPort Database. The dataset provides comprehensive profiles of the human immune system within healthy cohorts, representing various races.
DOI: 10.6084/m9.figshare.24808515
title: EvolDisp - SLiM output

description: SLiM simulation output to recreate figures
DOI: 10.6084/m9.figshare.24808515.v2
title: EvolDisp - SLiM output

description: SLiM simulation output to recreate figures
DOI: 10.6084/m9.figshare.24808515.v1
title: EvolDisp - SLiM output

description: SLiM simulation output to recreate figures
DOI: 10.6084/m9.figshare.24808518
title: EvolDisp - SLiM parameter files

description: Parameter files for SLiM model runs
DOI: 10.6084/m9.figshare.24808518.v2
title: EvolDisp - SLiM parameter files

description: Parameter files for SLiM model runs
DOI: 10.6084/m9.figshare.24808518.v1
title: EvolDisp - SLiM parameter files

description: Parameter files for SLiM model runs
DOI: 10.25345/c5ww77b2j
title: MassIVE MSV000095041 - Untargeted Metabolomic Profiling of Small Extracellular Vesicles Reveals Potential Biomarker for Triple Negative Breast Cancer
title: Introduction: Breast Cancer (BC) is one of the most diagnosed malignancies among women and the second leading cause of cancer related death in North America. Triple Negative BC (TNBC), one of the most aggressive subtypes of BC, is extremely aggressive and has a higher chance of occurrence in women under 50 years of age. Due to a lack of regular mammographic testing in women under 50, many individuals with TNBC are diagnosed late which can decrease their survival rate. Currently, liquid biopsy is being investigated as a potentially less-invasive alternative to traditional breast tissue biopsy, but this approach is not completely reliable. Blood contains extracellular vesicles (EVs), which carry biomolecular cargo and play a role in BC progression and metastasis. Examination of small EVs could potentially yield metabolite biomarkers for early BC diagnosis. Objective: We aim to study metabolites in small EVs to find biomarkers for BC diagnosis. Methods: In this work, an untargeted nano-LC MS/MS metabolomics approach was used to analyze metabolites from small EVs derived from metastatic MDA-MB-231 and compare it with a non-cancerous MCF10A cell line. Results: 2 metabolites, LysoPC 22:6/0:0 and N-acetyl-L-Phenylalanine, unique to sEVs of MDA-MB-231, were identified, validated, and proposed as potential BC biomarkers. Conclusion: Metabolites from sEVs may be used for BC diagnosis.
DOI: 10.6084/m9.figshare.26042341
title: Citations for data used

description: This file gives citations for the studies who's data is used in our work.
DOI: 10.7910/dvn/8wvqa0
title: Percepção auditiva de trabalhadores petroquímicos

description: INTRODUÇÃO: Os trabalhadores que atuam em indústrias petroquímicas estão expostos a altos níveis de pressão sonora e também a produtos químicos que fazem parte do processo industrial. Sabe-se que a exposição a elevados níveis de pressão sonora, assim como a exposição a agentes químicos, podem causar uma perda auditiva neuronsensorial. No entanto, há poucos estudos sobre a exposição concomitante de ruído excessivo e agentes químicos e em relação ao olhar que esses trabalhadores têm sob os riscos auditivos que estão expostos. OBJETIVO: Face ao exposto, este estudo tem por objetivo analisar o nível de compreensão que os trabalhadores petroquímicos têm sobre os riscos da exposição ao ruído e aos agentes químicos no sistema auditivo, levando a conscientização quanto ao uso contínuo e correto de EPIs (Equipamentos de Proteção Individual) e do necessário acompanhamento audiológico periódico. MATERIAIS E MÉTODOS: O presente estudo foi delineado como transversal descritivo executado através de um questionário eletrônico composto por 26 perguntas envolvendo questões sobre exposições ao ruído, exposições a agentes químicos, uso de EPIs, audiometria, audição e zumbido. O público alvo da pesquisa foram trabalhadores de ambos os sexos que atuam em indústrias petroquímicas por mais de 2 anos e com idade entre 18 e 60 anos, que trabalhassem expostos ao ruído e/ou produtos químicos. Foram excluídos aqueles que possuíam idade inferior a 18 anos e superior a 60 anos, para descartar possíveis alterações ocasionadas pela presbiacusia. RESULTADOS: Foram respondidos 56 questionários e desconsiderados 3 por preencherem os critérios de exclusão. Grande parte da amostra refere trabalhar exposto ao ruído, assim como confirmam estar expostos aos agentes químicos. Foi observado que a queixa auditiva mais marcante desse grupo estudado é o zumbido. Verificou-se uma relação entre a menor faixa etária, entre 18 e 40 anos e o desconhecimento sobre os riscos dos agentes químicos na saúde auditiva, já o tempo de trabalho não influenciou nas variáveis estudadas. CONCLUSÃO: Foi evidenciada a percepção sobre os riscos da exposição ao ruído industrial e a importância do uso dos equipamentos de proteção auditiva, contudo, o conhecimento sobre as ameaças da exposição aos agentes químicos requer mais esclarecimentos.
DOI: 10.60520/ieda/113219
title: EMPA major element analysis of garnet grains methods v.1

description: EMPA major element analysis of garnet grains methods from Ivrea-Verbano Zone granulites.
DOI: 10.6084/m9.figshare.26042389
title: DATA for published paper "Not all soil carbon is created equal: Labile and stable pools under nitrogen input"

description: The data that support the findings of "Not all soil carbon is created equal: Labile and stable pools under nitrogen input".