cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17915003
title: Automated detection and segmentation of smallholder fish ponds in Nigeria

description: fine_tune_final_dataset_freeze_v02_2.zip: YOLOv7 segmentation model

all_training_clean_state_clusters15_t01_wmore.zip:

Shape file used to train Random Forest model. The polygons labeled as Fish Pond are the manually annotated ponds. Columns are:




ids
Unique identifier of object.


state
State where the object is located


geometry
Polygon geometry


split
train/test/valid split


Fishpond
True label, 1: Fish Pond, 0: No Fish Pond


area
area of the prediction in meters 


length
perimeter of the prediction in meters


inv_isoper
isoperimetric ratio: how round is the prediction, 1 for circle


ave_r
average of red color for prediction 


ave_g
average of green color for prediction 


ave_b
average of blue color for prediction 


std_r
standard deviation of red color for prediction


std_g
standard deviation of green color for prediction


std_b
standard deviation of blue color for prediction


MSAVI_1km
Modified Soil Adjusted Vegetation Index for 1 km^2 around the polygon in December 2023


NDBI_1km
Normalized Difference Built-up Index for 1 km^2 around the polygon in December 2023


NDVI_1km
Normalized Difference Vegetation Index for 1 km^2 around the polygon in December 2023


NDWI_1km
Normalized Difference Water Index for 1 km^2 around the polygon in December 2023


MSAVI_pond
Modified Soil Adjusted Vegetation Index for the area of the polygon in December 2023


NDBI_pond
Normalized Difference Built-up Index for the area of the polygon in December 2023


NDVI_pond
Normalized Difference Vegetation Index for the area of the polygon in December 2023


NDWI_pond
Normalized Difference Water Index for the area of the polygon in December 2023


MSAVI_01
Modified Soil Adjusted Vegetation Index for 1 km^2 around the polygon in January 2024


NDBI_01
Normalized Difference Built-up Index for 1 km^2 around the polygon in January 2024


NDVI_01
Normalized Difference Vegetation Index for 1 km^2 around the polygon in January 2024


NDWI_01
Normalized Difference Water Index for 1 km^2 around the polygon in January 2024


MSAVI_stat
Modified Soil Adjusted Vegetation Index for the state in December 2023


NDBI_state
Normalized Difference Built-up Index for the state in December 2023


NDVI_state
Normalized Difference Vegetation Index for the state in December 2023


NDWI_state
Normalized Difference Water Index for the state in December 2023


clus_lab15
id of cluster, obtained using DBSCAN(eps=15, min_samples=3)


clus_siz15
number of neighbours in cluster, obtained using DBSCAN(eps=15, min_samples=3)


pred
Random Forest prediction for Fish Pond or no Fish Pond




 

fishpond_rf_model_state_cluster15_ndvi_ts_wmore : Random Forest Model 

final_fishponds_states.zip: All predictions made by the segmentation model. One zip file per state. To filter out only the fish ponds, filter by pred=1
DOI: 10.17026/ar/qtwmle
title: Archeologisch vooronderzoek plangebied Weelstraat te Oosterland, gemeente Schouwen- Duiveland
title: Ruimtelijk advies op basis van inventariserend veldonderzoek door middel van boringen (verkennende fase)

description: IVO-O
DOI: 10.5281/zenodo.18259116
title: Croton lombardianus Croizat. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:45
DOI: 10.5281/zenodo.18259117
title: Croton lombardianus Croizat. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:45
DOI: 10.5281/zenodo.18259130
title: 16-echoes-in-the-dust-arabic
DOI: 10.5281/zenodo.18259129
title: 16-echoes-in-the-dust-arabic
DOI: 10.5281/zenodo.18259136
title: Croton nitrariifolius Baill. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:45
DOI: 10.5281/zenodo.18259135
title: Croton nitrariifolius Baill. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:45
DOI: 10.5284/1137053
title: Digital Archive from an Excavation at Lord Mayor Treloar Hospital, Chawton Park Road, Alton, Hampshire, November-December 2019

description: This collection comprises images, documents, spreadsheets, databases, and GIS data from a programme of archaeological investigation at Lord Mayor Treloar Hospital, Chawton Road, Alton, Hampshire, undertaken by Cotswold Archaeology in November and December 2019 at the request of RPS Group PLC (on behalf of Crest Nicholson South). An area of 0.352ha was excavated within the site. The most notable discovery was a substantial post-built structure of Saxo-Norman date within the centre of the excavation area.
DOI: 10.15468/dl.jm6g5x
title: Occurrence Download

description: A dataset containing 9252222 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Adenocarpus gibbsianus, Alchemilla fontqueri, Allium pruinatum, Anthemis bourgaei, Arenaria nevadensis, Artemisia granatensis, Artemisia umbelliformis, Astragalus edulis, Astragalus tremolsianus, Atropa baetica, Carduus myriacanthus, Centaurea gadorensis, Centaurea kunkelii, Coronopus navasii, Crepis granatensis, Culcita macrocarpa, Cynomorium coccineum, Dianthus hinoxianus, Diplazium caudatum, Dryopteris tyrrhena, Equisetum palustre, Erigeron frigidus, Erodium astragaloides, Erodium cazorlanum, Erodium rupicola, Euonymus latifolius, Hieracium texedense, Hippocrepis prostrata, Hormathophylla baetica, Hymenostemma pseudanthemis, Hypochaeris salzmanniana, Isoetes durieui, Jurinea fontqueri, Laserpitium longiradium, Limonium estevei, Limonium malacitanum, Linaria benitoi, Linaria glacialis, Linaria lamarckii, Linaria tursica, Lithodora nitida, Marsilea batardae, Marsilea strigosa, Moehringia fontqueri, Narcissus longispathus, Narcissus nevadensis, Ononis azcaratei, Onopordum dissectum, Phyllitis sagittata, Picris willkommii, Pinguicula nevadensis, Plantago algarbiensis, Psilotum nudum, Pteris incompleta, Rosmarinus tomentosus, Senecio elodes, Seseli intricatum, Silene fernandezii, Sonchus pustulatus, Taraxacum gaditanum, Thymus albicans, Ulex canescens, Vandenboschia speciosa, Verbascum charidemi, Viola cazorlensis, Vulpia fontquerana, Abies pinsapo, Betula pendula, Campanula specularioides, Iberis carnosa embergeri, Juniperus oxycedrus, Aquilegia pyrenaica, Centaurea pulvinata, Gentiana sierrae, Veronica tenuifolia, Senecio nevadensis, Juniperus phoenicea, Leucanthemum arundanum, Moehringia intricata, Quercus alpestris, Euphorbia nevadensis, Leontodon boryi, Maytenus senegalensis, Aphanius baeticus, Aphanius iberus, Salmo trutta, Orculella bulgarica, Chionomys nivalis, Oenanthe oenanthe, Prunella collaris, Monticola saxatilis, Bucanetes githagineus, Alytes dickhilleni, Parnassius apollo, Polyommatus golgus, Agriades zullichi, Baetica ustulata, Rhyacophila nevada, Hydropsyche infernalis, Annitella esparraguera, Annitella iglesiasi, Limnephilus obsoletus, Stenophylax nycterobius, Taeniopteryx hubaulti, Perlodes microcephalus, Capnia nigra, Milvus milvus, Falco subbuteo, Ciconia nigra)",
 "DecimalLongitude is greater than or equal to -11",
 "DecimalLongitude is less than or equal to 50",
 "DecimalLatitude is greater than or equal to 30",
 "DecimalLatitude is less than or equal to 71",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1980",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Specimen, Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)"
 ]
}

 The dataset includes 9252222 records from 6907 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012133-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13130/rd_unimi/plhgbp/u6ngm0
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-20_25_15_10_T10_1_4297_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/afskul
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-30_15_7_10_T7_10_4437_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/iesma8
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-25_25_15_10_T5_5_4329_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/kdennj
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-25_25_15_10_T5_1_4329_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/coczsf
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-25_20_10_10_T10_5_4361_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/f0nure
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_41_25_15_10_T7_10_1857_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/3i4vkf
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-30_20_10_10_T7_5_4437_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/pdgqbl
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_41_25_15_10_T5_10_1857_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/dobxgj
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-25_20_10_10_T7_0_4361_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/gwjuyb
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-30_20_10_10_T10_10_4437_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/tdfsgl
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-30_15_7_10_T5_5_4437_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/bfydvw
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-30_20_10_10_T5_50_4437_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/fcfybt
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_36_25_15_10_T10_50_1962_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/tarl4s
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-25_20_10_10_T10_0_4361_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/fzoyar
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-30_15_7_10_T10_1_4437_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/rhqsnf
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_31_20_10_10_T10_5_2055_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/lpmtsf
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-20_15_7_10_T10_10_4329_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/ltmfjf
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-30_15_7_10_T10_50_4437_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/1clylk
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-20_20_10_10_T10_5_4329_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/3ud8ny
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-30_20_10_10_T5_5_4437_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/h0umie
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_31_25_15_10_T5_5_1996_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/ifotxj
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_41_20_10_10_T10_10_1937_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/vegpie
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_36_20_10_10_T5_50_1962_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/rcjtyv
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_36_20_10_10_T10_5_1962_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/gb7aqd
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_36_15_7_10_T5_50_2071_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/qilqne
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_36_20_10_10_T5_1_1962_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/kll5cb
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-20_15_7_10_T10_5_4329_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/p9btja
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_36_25_15_10_T10_5_1962_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/semszx
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_41_15_7_10_T10_0_2046_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/gys6zs
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-30_20_10_10_T7_0_4437_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/mskaih
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_41_15_7_10_T5_1_2046_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/e5gyai
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_31_20_10_10_T10_50_2055_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/tlegpm
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-25_25_15_10_T10_1_4329_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/pcggzt
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-30_25_15_10_T10_5_4404_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/08asuy
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_41_25_15_10_T10_5_1857_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/wwceob
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_36_15_7_10_T7_10_2071_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/bxjaqv
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_41_20_10_10_T5_50_1937_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/75g2xc
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_36_25_15_10_T5_50_1962_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/d8s0nt
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-30_25_15_10_T7_5_4404_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/0pit0u
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_36_25_15_10_T7_0_1962_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/cae1qg
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-25_15_7_10_T5_10_4361_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/vny9m8
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_41_20_10_10_T5_0_1937_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/corwo6
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_41_25_15_10_T10_1_1857_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/tc9lpo
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_31_20_10_10_T7_1_2055_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/bcsnjp
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-20_15_7_10_T7_1_4329_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/nlvryx
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-25_15_7_10_T10_1_4361_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/7zcqfr
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-30_25_15_10_T10_0_4404_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/gi1khf
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_41_15_7_10_T7_0_2046_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/ktowfi
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_41_20_10_10_T5_5_1937_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/fcxv3x
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_31_25_15_10_T7_50_1996_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/h185vf
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-30_25_15_10_T7_50_4404_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/ulowiu
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-30_15_7_10_T7_0_4437_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/b0apzc
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-25_25_15_10_T7_1_4329_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/o1z0qm
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_31_25_15_10_T7_10_1996_POST_EBI.rds
DOI: 10.15468/dl.yxvuds
title: Occurrence Download

description: A dataset containing 31637 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Occurrence evidence",
 "Country is Mexico",
 "DatasetKey is CNMA/Colección Nacional de mamíferos",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 31637 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039662-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13130/rd_unimi/plhgbp/r6nqme
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-20_20_10_10_T5_1_4329_PRE_EBI.rds
DOI: 10.15468/dl.f382zr
title: Occurrence Download

description: A dataset containing 222 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (ARG, CHL, PRY, URY, FLK, BRA.21_1, BRA.16_1, BRA.24_1)",
 "TaxonKey is Hybanthus"
 ]
}

 The dataset includes 222 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039661-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13130/rd_unimi/plhgbp/253npy
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-25_20_10_10_T7_50_4361_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/eykmir
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-20_15_7_10_T5_1_4329_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/dyl0vj
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-25_20_10_10_T10_10_4361_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/lwmt7m
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-25_20_10_10_T10_1_4361_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/y3l5gg
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-25_15_7_10_T5_1_4361_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/hdjyay
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-25_15_7_10_T7_0_4361_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/sbidwc
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_31_25_15_10_T10_10_1996_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/rmipc6
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-25_20_10_10_T5_10_4361_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/90h02d
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_31_15_7_10_T7_0_2105_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/ycfwdb
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_36_20_10_10_T7_1_1962_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/5bwikg
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_31_15_7_10_T10_1_2105_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/jhveob
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-20_20_10_10_T7_1_4329_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/v3m3oh
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-30_15_7_10_T5_1_4437_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/lzvupv
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_31_15_7_10_T5_5_2105_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/oh81fq
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_41_15_7_10_T10_50_2046_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/4bodko
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_36_20_10_10_T10_0_1962_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/svcw9j
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-20_25_15_10_T7_10_4297_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/9sketn
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-20_25_15_10_T10_50_4297_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/odudkp
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-30_20_10_10_T10_5_4437_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/uybfai
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_41_25_15_10_T5_50_1857_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/nvawgr
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_31_20_10_10_T10_0_2055_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/qnnebm
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_31_15_7_10_T7_1_2105_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/11ifv6
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_31_20_10_10_T7_5_2055_POST_EBI.rds
DOI: 10.15468/dl.j4pa4m
title: Occurrence Download

description: A dataset containing 5272 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pulsatilla grandis",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5272 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039660-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13130/rd_unimi/plhgbp/4cndgb
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_31_20_10_10_T5_5_2055_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/kueide
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_36_15_7_10_T5_1_2071_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/inq8ty
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_41_25_15_10_T7_50_1857_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/ptybdt
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_31_25_15_10_T10_0_1996_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/gxyr4f
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-20_20_10_10_T10_50_4329_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/8xd6sy
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-20_20_10_10_T10_1_4329_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/qpufzx
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_36_25_15_10_T10_10_1962_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/rxancr
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-30_25_15_10_T10_1_4404_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/96xli8
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_36_25_15_10_T7_10_1962_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/qutpfh
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_41_15_7_10_T5_50_2046_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/ufpnwy
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_36_20_10_10_T5_10_1962_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/8kg0va
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_41_20_10_10_T10_0_1937_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/idad7d
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_36_20_10_10_T7_10_1962_POST_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/q2rda5
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-30_20_10_10_T5_1_4437_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/i5uipv
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-30_20_10_10_T7_1_4437_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/mxtu59
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-30_20_10_10_T10_0_4437_PRE_EBI.rds
DOI: 10.5281/zenodo.17633989
title: Supplementary Materials_ Extended Barrier, Transcriptomic, Metabolomic, and Microbial Co-Metabolism Analyses in Healthy-FMT and GWI-FMT Mice

description: Supplementary Figure 1. Regional assessment of epithelial junctional markers in GWI-FMT mice.

(A) Cecum and colon weight-to-length ratios of Healthy-FMT and GWI-FMT mice demonstrate no gross morphological differences.

(B) Ocln mRNA levels in ileum are reduced in GWI-FMT mice.

(C–D) Western blot and densitometric analysis of Occludin (OCLN), Claudin-2 (CLDN2), and E-cadherin (ECAD) in proximal colon lysates show no significant change between groups. Data are presented as mean ± SD; n = 4/5 mice per group; unpaired two-tailed t-test.

 

Supplementary Figure 2. Transcript analysis of solute carriers in the intestine of Healthy- and GWI-FMT mice.

(A–C) Quantitative RT-PCR analysis of Slc26a3 and other solute carriers (Slc16a1, Abcb1, Slc9a3, Slc5a8, Slc10a2, Slc26a4, Slc26a6) in the (A) ileum, (B) proximal colon, and (C) distal colon. Transcript levels were normalized to Gapdh. No significant differences were observed between groups. Data are mean ± SD; n = 5 mice per group; unpaired two-tailed t-test.

 

Supplementary Figure 3. Metabolomic profiling in positive ion mode reveals additional discriminatory features.

(A) Principal component analysis (PCA) of fecal metabolites in positive ion mode shows overlapping but distinct clustering between Healthy-FMT (green) and GWI-FMT (purple) groups.

(B) Volcano plot identify significantly altered metabolites (|log₂FC| ≥ 1.3, p < 0.05); red = upregulated, blue = downregulated, grey = not significant.

(C) Bar graph of representative metabolites elevated in GWI-FMT mice, including procollagen-5-hydroxy-L-lysine (5-Hyl), cholic acid, and 5-acetamidovalerate. Data are mean ± SD; n = 5 mice per group; unpaired two-tailed t-test (*p < 0.05).

 

Supplementary Figure 4. Correlation and enrichment analyses identify metabolites and pathways associated with GWI status.

(A–B) Pattern Hunter correlation analysis of the top 25 metabolites most strongly associated with GWI status in negative and positive ion modes. Red indicates positive correlation and blue negative correlation with GWI.

(C) Quantitative enrichment analysis (QEA) of correlated metabolites show significant overrepresentation of pathways linked to amino acid metabolism, urea cycle, SLC-mediated transport, and bile acid/small-molecule transport. Dot size represents the number of matched metabolites; color denotes statistical significance (red = higher –log₁₀p).
DOI: 10.13130/rd_unimi/plhgbp/kxlepp
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-20_20_10_10_T10_10_4329_PRE_EBI.rds
DOI: 10.13130/rd_unimi/plhgbp/rx5n2h
title: 12000_Turdus-philomelos.rds_All_ALL_0.5_-20_15_7_10_T10_50_4329_PRE_EBI.rds