cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.emtddp
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-71.57644 12.68022,-74.42982 11.42751,-76.93523 9.24688,-78.00234 8.43495,-78.5359 6.4399,-79.09266 1.47549,-77.79356 0.24598,-76.37847 0.10679,-74.94018 -0.56595,-72.92194 -2.72339,-70.43973 6.90387,-72.57396 7.55342,-71.85482 11.6363,-71.57644 12.68022))",
 "TaxonKey is Paratrigona Schwarz, 1938"
 ]
}

 The dataset includes 113 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038067-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3641486_d1.v1
title: Additional file 2: Table S1. of Kaiso mediates human ICR1 methylation maintenance and H19 transcriptional fine regulation

description: Influence of Kaiso on other ICRs. Other ICRs than the ICR1 based on (Court et al. [43]) on different chromosomes were analysed for the presence of KBS and their number listed. In addition, the presence of ZPF57 target sites (ZFP57TS) was analysed (Y = yes, N = no) as well as the Kaiso knockdown effect on the methylation of the DMR and the transcription of flanking imprinted genes of the respective ICRs (n.d. = not determined, NO = no change observed, UP = upregulated, DOWN = downregulated). (XLSX 13 kb)
DOI: 10.26007/k1ez-p121
title: New Horizons Spacecraft Trajectory, Version 1.0

description: This collection contains New Horizons (NH) spacecraft trajectory in various 
 reference frames. The reference frames include
 Heliocentric Aries Ecliptic Date (HAE_DATE) a.k.a. Solar Ecliptic (SE) Date, 
 Heliocentric Aries Ecliptic J2000 (HAE_J2000) a.k.a Solar Ecliptic (SE) J2000, 
 Heliocentric Earth Ecliptic (HEE), 
 Heliocentric Earth Equatorial (HEEQ) a.k.a. Stonyhurst heliographic,
 Heliographic Inertial (HGI) a.k.a. Heliocentric Inertial (HCI),
 Heliographic (HG) a.k.a. Heliocentric Inertial (HCI) or Carrington system, 
 J2000, 
 Jupiter International Astronomical Union (IAU_JUPITER), 
 Jupiter J2000, 
 Pluto International Astronomical Union (IAU_PLUTO), and
 Pluto J2000.
 This information migrated from the Planetary Data System (PDS) PDS3 format 
 dataset NH-A-SWAP-3-KEM1-V6.0. A single table was separated into 11 tables 
 and labels were redesigned during migration.
DOI: 10.6084/m9.figshare.c.3641573_d10.v1
title: Additional file 5: of Identification and characterization of abundant repetitive sequences in Eragrostis tef cv. Enatite genome

description: Multiple alignment of non-LTR RT paralog sequences identified in teff, Rice and Maize. (MSF 33 kb)
DOI: 10.6084/m9.figshare.c.3641573_d14.v1
title: Additional file 13: of Identification and characterization of abundant repetitive sequences in Eragrostis tef cv. Enatite genome

description: Multiple alignment of Ty3-gypsy RT paralog sequences identified in teff cv Enantite and Tsedey. (MSF 49 kb)
DOI: 10.6084/m9.figshare.c.3641573_d15.v1
title: Additional file 12: of Identification and characterization of abundant repetitive sequences in Eragrostis tef cv. Enatite genome

description: Multiple alignment of Ty1-copia RT paralog sequences identified in teff cv Enantite and Tsedey. (MSF 51 kb)
DOI: 10.6084/m9.figshare.c.3641573_d17.v1
title: Additional file 10: of Identification and characterization of abundant repetitive sequences in Eragrostis tef cv. Enatite genome

description: Multiple alignment of hAT dimerization domain paralog sequences identified in teff, Rice and Maize. (MSF 7 kb)
DOI: 10.6084/m9.figshare.c.3641573_d16.v1
title: Additional file 1: of Identification and characterization of abundant repetitive sequences in Eragrostis tef cv. Enatite genome

description: Library Etef_repeats_V1.4 containing the repeats isolated in this study. (FAS 615 kb)
DOI: 10.6084/m9.figshare.c.3641588_d2.v1
title: Additional file 2 of A multi-task graph-clustering approach for chromosome conformation capture data sets identifies conserved modules of chromosomal interactions

description: The resulting cluster assignments reported in this study, and the feature matrices used for enrichment analysis. (XLS 4270 kb)
DOI: 10.6084/m9.figshare.c.3641603_d1.v1
title: Additional file 5: Table S5. of Genome dynamics of multidrug-resistant Acinetobacter baumannii during infection and treatment

description: Multiply mutated genes. All genes with multiple SNV and ISAba1 events are listed with their predicted function. The text color indicates what the class of mutations are: SNV or ISAba1 events, and whether the mutation was isolate-specific, patient-restricted, or patient-dependent. Green: IS SNV; blue: PR SNV; purple: PS SNV; orange: IS ISAba1; brown: PR ISAba1; pink: PS ISAba1. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3641603_d2.v1
title: Additional file 4: Table S4. of Genome dynamics of multidrug-resistant Acinetobacter baumannii during infection and treatment

description: Isolate-specific, patient-restricted, patient-specific ISAba1 events. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3641603_d3.v1
title: Additional file 3: Table S3. of Genome dynamics of multidrug-resistant Acinetobacter baumannii during infection and treatment

description: Isolate-specific, patient-restricted, patient-specific SNVs. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.c.3641603_d4.v1
title: Additional file 1: Table S1. of Genome dynamics of multidrug-resistant Acinetobacter baumannii during infection and treatment

description: Summary of patient and isolate data. Clade designation and infection type (monoclonal, polyclonal, mixed) is based on strain relatedness in the core phylogeny (Fig.Â 1). Number of SNVs (isolate-specific, patient-restricted, patient-dependent); number of ISAba1 events (isolate-specific, patient-restricted, patient-dependent). (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3641603_d5.v1
title: Additional file 2: Table S2. of Genome dynamics of multidrug-resistant Acinetobacter baumannii during infection and treatment

description: Isolate metadata including date and location of isolation, and antibiotic susceptibility data. Colistin susceptibility was assayed using both E-test strips (bioMĂŠrieux) and broth microdilution tests (Sensititre platform). (XLSX 63 kb)
DOI: 10.6084/m9.figshare.c.3641612_d1.v1
title: MOESM3 of Identification of genetic variation in the swine toll-like receptors and development of a porcine TLR genotyping array

description: Additional file 3. Number of gDNA samples included in each library pool and the corresponding sequencing read depth at each position (DP). Large White, Landrace, Duroc, Pietrain samples were merged in two library pools each according to their commercial origin. The numbers between brackets indicate the number of animals in each of the pools for these four breeds.
DOI: 10.6084/m9.figshare.c.3641612_d3.v1
title: MOESM7 of Identification of genetic variation in the swine toll-like receptors and development of a porcine TLR genotyping array

description: Additional file 7. List of the 93 polymorphisms present on the genotyping array. Description: The column “alternative allele frequency” shows the allele frequency of the alternative allele as calculated from the individual’s genotypes.
DOI: 10.6084/m9.figshare.c.3641612_d4.v1
title: MOESM1 of Identification of genetic variation in the swine toll-like receptors and development of a porcine TLR genotyping array

description: Additional file 1. Genomic information from the 49 TLR exons that are annotated in the genome Sscrofa10.2.69 database. Columns A and B (general information) supply general information on the TLR gene related to sense of transcription (phase +1: sense; −1: antisense), number of transcripts, protein ID and length. Detailed information on exons order and length of coding sequence and UTR is only supplied for RefSeq exons. RefSeq transcripts are highlighted in bold in column “Ensembl transcript ID”.
DOI: 10.6084/m9.figshare.c.3641612_d7.v1
title: MOESM6 of Identification of genetic variation in the swine toll-like receptors and development of a porcine TLR genotyping array

description: Additional file 6. List of the 306 TLR variants identified in this study. Breed specificity indicates the variants that are present in only that breed and at a pAAF higher than 0.5. In this column, the number between brackets indicates the pAAF in the breed with the variant allele.
DOI: 10.6084/m9.figshare.28049855
title: Disporopsis pernyi raw GC-MS files

description: Metabolite extraction from Disporopsis pernyi leaf tissue
DOI: 10.6084/m9.figshare.28049855.v1
title: Disporopsis pernyi raw GC-MS files

description: Metabolite extraction from Disporopsis pernyi leaf tissue
DOI: 10.6084/m9.figshare.c.3641717_d5.v1
title: MOESM1 of Time-scale dynamics of proteome and transcriptome of the white-rot fungus Phlebia radiata: growth on spruce wood and decay effect on lignocellulose

description: Additional file 1: Table S1. Complete list of gene models, their locations in the genome assembly, transcript counts and normalized abundances, peptide and protein abundances, and functional annotations, of the transcriptome and proteome of P. radiata cultivated on spruce wood.
DOI: 10.6084/m9.figshare.c.3641720_d3.v1
title: Additional file 2: of What is the impact of flexicurity on the chances of entry into employment for people with low education and activity limitations due to health problems? A comparison of 21 European countries using Qualitative Comparative Analysis (QCA)

description: QCA data set. Original and calibrated scores. (CSV 3 kb)
DOI: 10.15468/dl.qjpqp3
title: Occurrence Download

description: A dataset containing 69458 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Piaya cayana (Linnaeus, 1766)"
 ]
}

 The dataset includes 69458 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038066-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3641843_d3.v1
title: Additional file 3: of The essential genome of Streptococcus agalactiae

description: Dataset S2. Detailed Gene Fitness Data. Tab 1 (A909 Final Fitness Assignments) lists A909 genes alongside fitness classification as outlined in the main text. Tabs 2–4 (T0-3 ESSENTIALS Output) show raw data from ESSENTIALS analysis of sequencing data from pooled reads at each of three time points. The columns list (from left to right) gene loci, TA sites per locus, the expected insertion number given the null hypothesis that the gene is nonessential, the log2 FC value for that gene’s experimental vs. expected insertion count, the p value for the FC (generalized linear model likelihood ratio test, corrected for multiple comparisons), start and stop base pair positions for the gene’s ORF, the strand on which the ORF is read, the gene length, its name (if named), and the protein product (if known). Tab 5 (RegPrecise Regulons) lists predicted GBS regulon gene participants. Gene loci are provided for the GBS reference strain 2603 V/R and the A909 homolog. Final fitness category assignments are provided for each gene. Tab 6 (2-Component Systems) shows predicted gene participation in two-component systems identified by P2CS. Columns (from left to right) list GBS gene loci, the original literature description of the gene product function (not necessarily in GBS), the gene’s fitness category assignment, the functional class predicted by domain architecture (either response regulator [RR] or sensor histidine kinase [HK]), and whether the function of the gene or its homolog has been validated experimentally. (XLSX 815 kb)
DOI: 10.6084/m9.figshare.c.3641864_d1.v1
title: Additional file 1: of Comparison of voluntary food intake and palatability of commercial weight loss diets in healthy dogs and cats

description: Computer spreadsheet containing data from all studies. (XLSX 36Â kb)
DOI: 10.6084/m9.figshare.c.3641861_d1.v1
title: MOESM1 of Implementation and evaluation of amyloidosis subtyping by laser-capture microdissection and tandem mass spectrometry

description: Additional file 1. Summary data for amyloidosis subtyping.
DOI: 10.6084/m9.figshare.c.3641867_d1.v1
title: Additional file 1: Table S1. of Heme pathway evolution in kinetoplastid protists

description: Table of localization predictions for proteins involved in heme metabolism in Kinetoplastea. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3641867_d3.v1
title: Additional file 4: Table S3. of Heme pathway evolution in kinetoplastid protists

description: Table with accession numbers of the proteins involved in the heme pathway, encoded in Kinetoplastea and the host Paramoeba/Neoparamoeba. (XLSX 72 kb))
DOI: 10.6084/m9.figshare.c.3641867_d5.v1
title: Additional file 2: Table S2. of Heme pathway evolution in kinetoplastid protists

description: Table with accession numbers of proteins used for the Kinetoplastea phylogeny. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3641870_d2.v1
title: MOESM2 of Whole exome sequencing and single nucleotide polymorphism array analyses to identify germline alterations in genes associated with testosterone metabolism in a patient with androgen insensitivity syndrome and early-onset colorectal cancer

description: Additional file 2: Table S2. List of genes associated with inherited predisposition to colorectal cancer (CRC).
DOI: 10.15468/dl.4sht4u
title: Occurrence Download

description: A dataset containing 127 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-71.65886 13.12198,-78.68086 7.25173,-77.08326 1.56725,-71.58455 2.12455,-71.65886 13.12198))",
 "TaxonKey is Paratrigona Schwarz, 1938"
 ]
}

 The dataset includes 127 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038068-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3641945_d1.v1
title: Additional file 1: of Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network

description: Table detailing the accession numbers of isolates used within the study. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3641966_d1.v1
title: Additional file 2: Table S7. of Feature-based classification of human transcription factors into hypothetical sub-classes related to regulatory function

description: Full list of transcription factors, with properties and their classification. (XLS 945 kb)
DOI: 10.6084/m9.figshare.c.3641966_d3.v1
title: Additional file 3: Table S8. of Feature-based classification of human transcription factors into hypothetical sub-classes related to regulatory function

description: Functional Annotation Clustering output from DAVID enrichment analysis. (XLS 1695 kb)
DOI: 10.6084/m9.figshare.c.3642098_d2.v1
title: Additional file 2: of Epidemiology, impact and control of bovine cysticercosis in Europe: a systematic review

description: List of references for the records included in the review. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3642113_d7.v1
title: Additional file 14: of Direct imaging of glycans in Arabidopsis roots via click labeling of metabolically incorporated azido-monosaccharides

description: Figures in high resolution. (ZIP 22425Â kb)
DOI: 10.6084/m9.figshare.c.3642200_d2.v1
title: MOESM1 of Effect of topically applied Saccharomyces boulardii on the healing of acute porcine wounds: a preliminary study

description: Additional file 1. Wound measurements.
DOI: 10.15468/dl.rh8byn
title: Occurrence Download

description: A dataset containing 345 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-73.14713 12.22147,-78.75776 6.08229,-78.83908 1.40676,-74.36683 -0.21951,-71.43954 5.30982,-73.14713 12.22147))",
 "TaxonKey is Plebeia Schwarz, 1938"
 ]
}

 The dataset includes 345 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038069-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3642218_d5.v1
title: Additional file 7: of SFRP1 is a possible candidate for epigenetic therapy in non-small cell lung cancer

description: KEGG pathways associated with genes in TableÂ 1. Pathway image files downloaded from KEGG and the html file is linked to these images. (ZIP 963 kb)
DOI: 10.6084/m9.figshare.c.3642302_d2.v1
title: Additional file 1: Table S1. of eMERGE Phenome-Wide Association Study (PheWAS) identifies clinical associations and pleiotropy for stop-gain variants

description: Distribution of samples across the two datasets. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3642302_d1.v1
title: Additional file 3: Table S3. of eMERGE Phenome-Wide Association Study (PheWAS) identifies clinical associations and pleiotropy for stop-gain variants

description: Dataset 1 results at p-value significance of 0.01. (XLSX 67 kb)
DOI: 10.6084/m9.figshare.c.3642302_d3.v1
title: Additional file 2: Table S2. of eMERGE Phenome-Wide Association Study (PheWAS) identifies clinical associations and pleiotropy for stop-gain variants

description: Annotation of 20 variants (excluding 5 proof of principle variants) from different prediction tools. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.c.3642302_d4.v1
title: Additional file 4: Table S4. of eMERGE Phenome-Wide Association Study (PheWAS) identifies clinical associations and pleiotropy for stop-gain variants

description: Dataset 2 results at p-value significance of 0.01. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.c.3642320_d4.v1
title: Additional file 4: Table S4. of Transcriptome profiling of soybean (Glycine max) roots challenged with pathogenic and non-pathogenic isolates of Fusarium oxysporum

description: Output generated from Mercator sequence annotation webserver ( http://www.plabipd.de/portal/web/guest/mercator-sequence-annotation ). The file can be used as input into MapMan as a mappings file to explore subsets of Glycine max version 2 gene models for significant enrichment in any of the Mercator defined bins. (XLSX 9217Â kb)
DOI: 10.15468/dl.p2zuke
title: Occurrence Download

description: A dataset containing 600 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-73.8361 12.55449,-77.93565 6.64761,-79.69889 1.13746,-73.30712 1.18154,-72.86631 12.29,-73.8361 12.55449))",
 "TaxonKey is Scaptotrigona Moure, 1942"
 ]
}

 The dataset includes 600 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038070-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3642365_d1.v1
title: MOESM3 of A reverse genetic approach identifies an ancestral frameshift mutation in RP1 causing recessive progressive retinal degeneration in European cattle breeds

description: Additional file 3: Tables S3, S4, S5, S6 and S7. Additional information on the results of the gene enrichment analysis performed with Ingenuity Pathway Analysis.  This file contains five tables providing additional details on the results of the gene enrichment analysis: a summary of the significant diseases and disorders annotations (Table S3), a summary of significant physiological system development and function annotations (Table S4), a summary of significant molecular and cellular functions annotations (Table S5), the key-word attribution to each significant functional annotation conserved for the analysis (Table S6) and the significant canonical pathways (Table S7).
DOI: 10.6084/m9.figshare.28049870.v1
title: Gymnocladus dioicus raw GC-MS files

description: Metabolite extraction from Gymnocladus dioicus leaf tissue
DOI: 10.6084/m9.figshare.c.3642365_d2.v1
title: MOESM2 of A reverse genetic approach identifies an ancestral frameshift mutation in RP1 causing recessive progressive retinal degeneration in European cattle breeds

description: Additional file 2: Table S2. Details on non-rare putative deleterious variants selected in 15 breeds from the 1000 bull genomes run4 dataset. This file contains the list of the 2489 variants selected in this study. For each of them, we indicate: (i) the frequency in each breed, (ii) the functional consequence on the protein, and (iii) the genetic syndromes associated with mutations within the same gene in human (Online Mendelian Inheritance in Man, OMIM; http://www.omim.org ) and mouse (Mammalian Phenotypes; http://www.informatics.jax.org ). AAN: Aberdeen-Angus, BBR: Beef Booster Composite, BSW: Brown Swiss, CHA: Charolais, GVH: Gelbvieh, HER: Hereford, HOL: Holstein, JER: Jersey, LIM: Limousine, MON: Montbéliarde, NOR: Normande, RAN: Red Angus, RDCF: Finnish Red, RDCS: Swedish Red, and SIM: Simmental.
DOI: 10.6084/m9.figshare.28049870
title: Gymnocladus dioicus raw GC-MS files

description: Metabolite extraction from Gymnocladus dioicus leaf tissue
DOI: 10.6084/m9.figshare.c.3642365_d3.v1
title: MOESM1 of A reverse genetic approach identifies an ancestral frameshift mutation in RP1 causing recessive progressive retinal degeneration in European cattle breeds

description: Additional file 1: Table S1. Details on animals used in the phenotypic characterization of the RP1 frameshift. This table provides details on the animals used for each analysis in this study. AAN: Aberdeen-Angus, BBB: Belgian Blue, BBR: Beef Booster Composite, CHA: Charolais, GVH: Gelbvieh, HOL: Holstein, NOR: Normande, NOR*HOL: Normande*Holstein crossbred RAN: Red Angus, RDP: Maine-Anjou.
DOI: 10.6084/m9.figshare.c.3642380_d1.v1
title: Additional file 1: of Front-line intraperitoneal versus intravenous chemotherapy in stage III-IV epithelial ovarian, tubal, and peritoneal cancer with minimal residual disease: a competing risk analysis

description: Dataset for computing competing risks. (CSV 18Â kb)
DOI: 10.6084/m9.figshare.c.3642389_d2.v1
title: Additional file 6: of Modular reorganization of the global network of gene regulatory interactions during perinatal human brain development

description: Transcription factor binding site enrichment analysis per module obtained using Webgestalt [27]. Statistically significant overrepresentation of transcription factor binding motifs terms was assessed based on the toolâ  s standard hypergeometric test. Separate tabs are included in this file for each separate module. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3642389_d4.v1
title: Additional file 4: of Modular reorganization of the global network of gene regulatory interactions during perinatal human brain development

description: Gene ontology enrichment analysis per module. Only gene ontology terms annotated to at least 150 genes are included. Statistically significant overrepresentation of GO terms was assessed based on a Z-score test. Mean and standard deviation for the expected number of genes annotated to each GO term per module were estimated based on 10,000 equally-sized random samples drawn from the background gene population. P values, where adjusted for multiple testing using Benjamini-Hochberg correction. Separate tabs are included in this file for each separate module. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3642389_d3.v1
title: Additional file 5: of Modular reorganization of the global network of gene regulatory interactions during perinatal human brain development

description: Gene ontology enrichment analysis per module obtained using Webgestalt [27]. Statistically significant overrepresentation of GO terms was assessed based on the toolâ  s standard hypergeometric test. Only biological process terms were considered. Separate tabs are included in this file for each separate module. (XLSX 235 kb)