cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.924794
title: Seawater carbonate chemistry and growth and photosynthetic oxygen rate and respiration rate of Skeletonema costatum and Ulva linza

description: Red tide and green tide are two common algal blooms that frequently occur in many areas in the global oceans. The algae causing red tide and green tide often interact with each other in costal ecosystems. However, little is known on how future CO2-induced ocean acidification combined with temperature variation would affect the interaction of red and green tides. In this study, we cultured the red tide alga Skeletonema costatum and the green tide alga Ulva linza under ambient (400 ppm) and future CO2 (1000 ppm) levels and three temperatures (12, 18, 24 °C) in both monoculture and coculture systems. Coculture did not affect the growth rate of U. linza but significantly decreased it for S. costatum. Elevated CO2 relieved the inhibitory effect of U. linza on the growth of S. costatum, particularly for higher temperatures. At elevated CO2, higher temperature increased the growth rate of S. costatum but reduced it for U. linza. Coculture with U. linza reduced the net photosynthetic rate of S. costatum, which was relieved by elevated CO2. This pattern was also found in Chl a content, indicating that U. linza may inhibit growth of S. costatum via harming pigment synthesis and thus photosynthesis. In monoculture, higher temperature did not affect respiration rate of S. costatum but increased it in U. linza. Coculture did not affect respiration of U. linza but stimulated it for S. costatum, which was a signal of responding to biotic and/abiotic stress. The increased growth of S. costatum at higher temperature and decreased inhibition of U. linza on S. costatum at elevated CO2 suggest that red tides may have more advantages over green tides in future warmer and CO2-enriched oceans.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2020) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-11-11.
DOI: 10.1594/pangaea.861373
title: Impact of CO2-driven acidification on the development of the sea cucumber Apostichopus japonicus (Selenka) (Echinodermata: Holothuroidea)

description: We evaluated the impact of ocean acidification on the early development of sea cucumber Apostichopus japonicus. The effect of pH-levels (pH 8.04, 7.85, 7.70 and 7.42) were tested on post-fertilization success, developmental (stage duration) and growth rates. Post-fertilization success decreased linearly with pH leading to a 6% decrease at pH 7.42 as compared to pH 8.1. The impact of pH on developmental time was stage-dependent: (1) stage duration increased linearly with decreasing pH in early-auricularia stage; (2) decreased linearly with decreasing pH in the mid-auricularia stage; but (3) pH decline had no effect on the late-auricularia stage. At the end of the experiment, the size of doliolaria larvae linearly increased with decreasing pH. In conclusion, a 0.62 unit decrease in pH had relatively small effects on A. japonicus early life-history compared to other echinoderms, leading to a maximum of 6% decrease in post-fertilization success and subtle effects on growth and development.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-06-06.
description: Supplement to: Yuan, Xiutang; Shao, Senlin; Dupont, Sam; Meng, Leiming; Liu, Yongjian; Wang, Lijun (2015): Impact of CO2-driven acidification on the development of the sea cucumber Apostichopus japonicus (Selenka) (Echinodermata: Holothuroidea). Marine Pollution Bulletin, 95(1), 195-199
DOI: 10.1594/pangaea.860871
title: Effects of elevated pCO2 on the post-settlement development of Pocillopora damicornis

description: Ocean acidification represents a key threat to the recruitment of scleractinian corals. Here, we investigated the effect of increased partial pressure of carbon dioxide (pCO2) on the early development of Pocillopora damicornis by rearing the recruits for 12 days at 3 pCO2 levels (446, 896 and 1681 µatm). Results showed that increased pCO2 exerted minor effects on symbiont density and maximum quantum yield (Fv/Fm), while significantly enhanced the relative electron transport through photosystem II (PSII) of Symbiodinium. Notably, calcification and biomass of recruits decreased sharply by 34% and 24% respectively in 896 µatm, and tended to remain constant as pCO2 was raised from 896 to 1681 µatm. Furthermore, recruits in 1681 matm, with comparable surface area as those in 896 µatm, produced fewer buds. These findings indicated that juvenile P. damicornis under high pCO2 would enhance electron transport rate and suppress asexual budding to favor skeletal and tissue growths, which are more critical for their persistence and survival in a high pCO2 environment. This work suggested the physiological plasticity of juvenile corals under short-term exposure to elevated pCO2.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-05-26.
description: Supplement to: Jiang, Lei; Huang, Hui; Yuan, Xiangcheng; Yuan, Tao; Zhang, Yuyang; Wen, Colin Kuo-Chang; Li, Xiubao; Zhou, Guowei (2015): Effects of elevated pCO2 on the post-settlement development of Pocillopora damicornis. Journal of Experimental Marine Biology and Ecology, 473, 169-175
DOI: 10.1594/pangaea.861380
title: Control of ambient pH on growth and stable isotopes in phytoplanktonic calcifying algae

description: The present work examines the relationship between pH-induced changes in growth and stable isotopic composition of coccolith calcite in two coccolithophore species with a geological perspective. These cells (Gephyrocapsa oceanica and Coccolithus pelagicus) with differing physiologies and vital effects possess a growth optimum corresponding to average pH of surface seawater in the geological period during their first known occurrence. Diminished growth rates outside of their optimum pH range are explained by the challenge of proton translocation into the extracellular environment at low pH, and enhanced aqueous CO2 limitation at high pH. These diminished growth rates correspond to a lower degree of oxygen isotopic disequilibrium in G. oceanica. In contrast, the slower growing and ancient species C. pelagicus, which typically precipitates near-equilibrium calcite, does not show any modulation of oxygen isotope signals with changing pH. In CO2-utilizing unicellular algae, carbon and oxygen isotope compositions are best explained by the degree of utilization of the internal dissolved inorganic carbon (DIC) pool and the dynamics of isotopic re-equilibration inside the cell. Thus, the "carbonate ion effect" may not apply to coccolithophores. This difference with foraminifera can be traced to different modes of DIC incorporation into these two distinct biomineralizing organisms. From a geological perspective, these findings have implications for refining the use of oxygen isotopes to infer more reliable sea surface temperatures (SSTs) from fossil carbonates, and contribute to a better understanding of how climate-relevant parameters are recorded in the sedimentary archive.
description: Supplement to: Hermoso, Michael (2015): Control of ambient pH on growth and stable isotopes in phytoplanktonic calcifying algae. Paleoceanography, 30(8), 1100-1112
DOI: 10.1594/pangaea.860979
title: Limited effects of increased CO2 and temperature on metal and radionuclide bioaccumulation in a sessile invertebrate, the oyster Crassostrea gigas

description: This study investigated the combined effects of reduced pH and increased temperature on the capacities of the Pacific cupped oyster Crassostrea gigas to bioconcentrate radionuclide and metals. Oysters were exposed to dissolved radiotracers (110mAg, 241Am, 109Cd,57Co,54Mn, and 65Zn) at three pH (7.5, 7.8, 8.1) and two temperatures (21 and 24°C) under controlled laboratory conditions. Although calcifying organisms are recognized as particularly vulnerable to ocean acidification, the oyster did not accumulate differently the studied metals when exposed under the different pH conditions. However, temperature alone or in combination with pH somewhat altered the bioaccumulation of the studied elements. At pH 7.5, Cd was accumulated with an uptake rate constant twofold higher at 24°C than 21°C. Bioaccumulation of Mn was significantly affected by an interactive effect between seawater pH and temperature, with a decreased uptake rate at pH 7.5 when temperature increased (27 ± 1 vs. 17 ± 1 /day at 21 and 24°C, respectively). Retention of Co and Mn tended also to decrease at the same pH with decreasing temperature. Neither pH nor temperature affected strongly the elements distribution between shell and soft tissues. Significant effects of pH were found on the bioaccessibility of Mn, Zn, and 241Am during experimental in vitro simulation of human digestion.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-05-26.
description: Supplement to: Belivermis, Murat; Warnau, Michel; Metian, Marc; Oberhänsli, F; Teyssié, Jean-Louis; Lacoue-Labarthe, Thomas (2016): Limited effects of increased CO2 and temperature on metal and radionuclide bioaccumulation in a sessile invertebrate, the oyster Crassostrea gigas. ICES Journal of Marine Science, 73(3), 753-763
DOI: 10.1594/pangaea.860529
title: Physiological response of the cold-water coral Desmophyllum dianthus to thermal stress and ocean acidification

description: Rising temperatures and ocean acidification driven by anthropogenic carbon emissions threaten both tropical and temperate corals. However, the synergistic effect of these stressors on coral physiology is still poorly understood, in particular for cold-water corals. This study assessed changes in key physiological parameters (calcification, respiration and ammonium excretion) of the widespread cold-water coral Desmophyllum dianthus maintained for 8 months at two temperatures (ambient 12 °C and elevated 15 °C) and two pCO2 conditions (ambient 390 ppm and elevated 750 ppm). At ambient temperatures no change in instantaneous calcification, respiration or ammonium excretion rates was observed at either pCO2 levels. Conversely, elevated temperature (15 °C) significantly reduced calcification rates, and combined elevated temperature and pCO2 significantly reduced respiration rates. Changes in the ratio of respired oxygen to excreted nitrogen (O:N), which provides information on the main sources of energy being metabolized, indicated a shift from mixed use of protein and carbohydrate/lipid as metabolic substrates under control conditions, to less efficient protein-dominated catabolism under both stressors. Overall, this study shows that the physiology of D. dianthus is more sensitive to thermal than pCO2 stress, and that the predicted combination of rising temperatures and ocean acidification in the coming decades may severely impact this cold-water coral species.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-05-16.
description: Supplement to: Gori, Andrea; Ferrier-Pagès, Christine; Hennige, Sebastian J; Murray, Fiona; Rottier, Céline; Wicks, L C; Roberts, J Murray (2016): Physiological response of the cold-water coral Desmophyllum dianthus to thermal stress and ocean acidification. PeerJ, 4, e1606
DOI: 10.1594/pangaea.860802
title: Coralline algal physiology is more adversely affected by elevated temperature than reduced pH

description: In this study we analyzed the physiological responses of coralline algae to ocean acidification (OA) and global warming, by exposing algal thalli of three species with contrasting photobiology and growth-form to reduced pH and elevated temperature. The analysis aimed to discern between direct and combined effects, while elucidating the role of light and photosynthesis inhibition in this response. We demonstrate the high sensitivity of coralline algae to photodamage under elevated temperature and its severe consequences on thallus photosynthesis and calcification rates. Moderate levels of light-stress, however, were maintained under reduced pH, resulting in no impact on algal photosynthesis, although moderate adverse effects on calcification rates were still observed. Accordingly, our results support the conclusion that global warming is a stronger threat to algal performance than OA, in particular in highly illuminated habitats such as coral reefs. We provide in this study a quantitative physiological model for the estimation of the impact of thermal-stress on coralline carbonate production, useful to foresee the impact of global warming on coralline contribution to reef carbon budgets, reef cementation, coral recruitment and the maintenance of reef biodiversity. This model, however, cannot yet account for the moderate physiological impact of low pH on coralline calcification.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-05-26.
description: Supplement to: Vásquez-Elizondo, Román Manuel; Enríquez, Susana (2016): Coralline algal physiology is more adversely affected by elevated temperature than reduced pH. Scientific Reports, 6, 19030
DOI: 10.1594/pangaea.918441
title: Alkalinity in porewater profile of sediment core BOX_1GL01 from the Gulf of Cádiz (North East Atlantic)
DOI: 10.1594/pangaea.920033
title: Seawater carbonate chemistry and the production of DMSP and DMS in the culture of Amphidinium carterae

description: Ocean acidification and global warming might affect the production of dimethylsulfoniopropionate (DMSP), dimethylsulfide (DMS), and dissolved acrylic acid (AAd) by marine phytoplankton. Monoculture incubation experiments were conducted with the dinoflagellate Amphidinium carterae to investigate the effects of elevated CO2 concentration and temperature on growth and productions of DMSP, DMS, and AAd. Two pCO2 levels were set as 400 and 1000 μatm, and two temperatures were set as 20 and 23 °C. The growth of A. carterae remained unaffected by an increase of CO2 to 1000 μatm and a rise of temperature of 3 °C. Moreover, the elevated CO2 concentration and temperature had no significant effects on the concentrations and cell-normalized concentrations of DMSP, DMS, and AAd. No additive or synergistic effects of elevated CO2 concentration and temperature on A. carterae were observed, indicating that A. carterae was insensitive to elevated CO2 and temperature in short time incubation.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-07-07.
DOI: 10.1594/pangaea.859531
title: Individual and population-level responses to ocean acidification

description: Ocean acidification is predicted to have detrimental effects on many marine organisms and ecological processes. Despite growing evidence for direct impacts on specific species, few studies have simultaneously considered the effects of ocean acidification on individuals (e.g. consequences for energy budgets and resource partitioning) and population level demographic processes. Here we show that ocean acidification increases energetic demands on gastropods resulting in altered energy allocation, i.e. reduced shell size but increased body mass. When scaled up to the population level, long-term exposure to ocean acidification altered population demography, with evidence of a reduction in the proportion of females in the population and genetic signatures of increased variance in reproductive success among individuals. Such increased variance enhances levels of short-term genetic drift which is predicted to inhibit adaptation. Our study indicates that even against a background of high gene flow, ocean acidification is driving individual- and population-level changes that will impact eco-evolutionary trajectories.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-04-12.
description: Supplement to: Harvey, Ben P; McKeown, Niall J; Rastrick, S P S; Bertolini, Camilla; Foggo, Andy; Graham, Helen; Hall-Spencer, Jason M; Milazzo, Marco; Shaw, Paul W; Small, Daniel; Moore, Pippa J (2016): Individual and population-level responses to ocean acidification. Scientific Reports, 6, 20194
DOI: 10.1594/pangaea.906953
title: Discrete samples analysis of dissolved inorganic carbon and total alkalinity in the coral reef, a seagrass meadow and a mangrove forest in the Red Sea

description: #999 = NA
DOI: 10.1594/pangaea.860214
title: Temperature affects the morphology and calcification of Emiliania huxleyi strains

description: The global warming debate has sparked an unprecedented interest in temperature effects on coccolithophores. The calcification response to temperature changes reported in the literature, however, is ambiguous. The two main sources of this ambiguity are putatively differences in experimental setup and strain-specificity. In this study we therefore compare three strains isolated in the North Pacific under identical experimental conditions. Three strains of Emiliania huxleyi type A were grown under non-limiting nutrient and light conditions, at 10, 15, 20 and 25 ºC. All three strains displayed similar growth rate versus temperature relationships, with an optimum at 20-25 ºC. Elemental production (particulate inorganic carbon (PIC), particulate organic carbon (POC), total particulate nitrogen (TPN)), coccolith mass, coccolith size, and width of the tube elements cycle were positively correlated with temperature over the sub-optimum to optimum temperature range. The correlation between PIC production and coccolith mass/size supports the notion that coccolith mass can be used as a proxy for PIC production in sediment samples. Increasing PIC production was significantly positively correlated with the percentage of incomplete coccoliths in one strain only. Generally, coccoliths were heavier when PIC production was higher. This shows that incompleteness of coccoliths is not due to time shortage at high PIC production. Sub-optimal growth temperatures lead to an increase in the percentage of malformed coccoliths in a strain-specific fashion. Since in total only six strains have been tested thus far, it is presently difficult to say whether sub-optimal temperature is an important factor causing malformations in the field. The most important parameter in biogeochemical terms, the PIC:POC, shows a minimum at optimum growth temperature in all investigated strains. This clarifies the ambiguous picture featuring in the literature, i.e. discrepancies between PIC:POC-temperature relationships reported in different studies using different strains and different experimental setups. In summary, global warming might cause a decline in coccolithophore's PIC contribution to the rain ratio, as well as improved fitness in some genotypes due to less coccolith malformations.
description: The carbonate system was calculated from temperature, salinity (32), TA and DIC, using the the program CO2Sys (Lewis and Wallace, 1998), applying the equilibrium constants from Mehrbach et al. (1973), refitted by Dickson and Millero (1987).
description: Supplement to: Rosas-Navarro, Anaid; Langer, Gerald; Ziveri, Patrizia (2016): Temperature affects the morphology and calcification of Emiliania huxleyi strains. Biogeosciences, 13(10), 2913-2926