cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.91403.v3
title: The transfer of dPNA:GFP from the Bolwig

description: <strong>S1. </strong>Confocal optical sections of a Pdf-RFP1 expressing Lateral Neuron (LN) in the 2nd instar larval brain that colocalized with the dPNA:GFP label (S1', arrowheads). S1" is a merged image of S1 and S1' channels. <strong>S2. </strong>Yet another example of dPNA:GFP (arrowheads) co-localization in Pdf-RFP1 expressing LNs. RFP expression often times inside the LNs appear to be aggregated. <strong>S3. </strong>Confocal image of the left hemisphere of a larval brain expressing dPNA:GFP in Bolwig's Organ terminals (BOt). Arrowhead indicates dPNA:GFP puncta in one LN that colocalizes with the corresponding Pdf-RFP1 expressing LN in S3". The encircled cluster of GFP-label farther away from the BOt and the highly localized dPNA:GFP relatively closer (arrows) represent candidate neurons that are not LNs. This supports the notion that other interneurons, besides the LNs, also contact the BOt. The background RFP label in the brain excluding the Pdf-RFP1 is due to the activity of 3xP3-RFP that is a part of the chromosomal attP landing site. I used the PhiC31 method (Bischoff et al. 2007) to integrate the UAS-dPNA:GFP-attB transgene into the 3rd chromosome. Removal of the 3xP3-RFP transgene from the landing site is underway.
DOI: 10.6084/m9.figshare.91382
title: A modest test

description: 2BQV
DOI: 10.6084/m9.figshare.91382.v1
title: A modest test

description: 2BQV
DOI: 10.6084/m9.figshare.91401.v3
title: The PEEL_0 ("Partial Equilibrium Economic Land use model, time zero") initialization dataset.

description: The PEEL0 land cover dataset for the conterminous USA characterizes each of its five arc- minute cells in terms of sub-pixel area fractions for 15 land use and natural cover classes, with the fractions for each cell summing to unity. This dataset has three advantages relative to other products. First, the cover classification addresses distinctions important in studies of the economic dimensions of land use and land cover change, by distinguishing between land uses associated with human and natural processes and among different crops while simultaneously providing a complete representation of cover in each cell. Second, aggregates for the various cover classes in PEEL0 compare more favorably with national-level statistics from USDA Major Land Uses (MLU) census data for 2002 than do other sources. Aggregate cultivated land is within 0.8% of the MLU value, compared with 16.2% for the Modis Land Cover Type (MLCT) primary cover product, 1.8% for the National Land Cover Database (NLCD), and 1.2% for the Agricultural Lands in the Year 2000 (Agland2000) dataset. Aggregate water, natural, and urban cover classes are within 2.2, 1.0, and 6.1%, respectively, compared with deviations of 24.0, 0.01, and 69.2% for MLCT primary and 2.2, 1.35, and 6.1% for NLCD. Third, the spatial distribution of cultivated land is improved; PEEL0’s per cell subpixel fraction root mean square error for cropland relative to NLCD is 0.149 versus 0.175 for the 2001 MLCT primary classification, a 16% improvement. PEEL0’s improved performance is due to the method used in its construc- tion, by which information is combined from multiple sources, including spatial datasets (here, 2001 MLCT, 2001 NLCD, and Agland2000) and agricultural production statistics, to guide both aggregation of multiple fine-scale land use/land cover classifications, decomposition of hybrid classes to separate their constitutive land uses and natural covers, and corrections to classifications to address systematic biases. This procedure is adaptable to other regions, datasets, and requirements.
DOI: 10.6084/m9.figshare.91374.v2
title: Multifractals for ecological spatial data

description: Presentation given on IMCOAST (Impact of climate induced glacial melting on marine coastal systems in the Western Antarctic Peninsula region) workshop held in Buenos Aires, Argentina, april 2012. Abstract: Multifractal theory can be used as a method specially suitable to analyze ecological spatial data. Density distributions or individual distributions of one or several species can be characterized using this kind of analysis. Data that are very difficult to characterize with averages due to its very irregular nature or due to its non-stationarity can be analyzed using this techniques. Comparisons against null models can be done using randomization procedures and the existence of different underlying processes can be hypothesized. An open source software package was developed to perform this analysis.
DOI: 10.6084/m9.figshare.91401.v4
title: The PEEL_0 ("Partial Equilibrium Economic Land use model, time zero") initialization dataset.

description: The PEEL0 land cover dataset for the conterminous USA characterizes each of its five arc- minute cells in terms of sub-pixel area fractions for 15 land use and natural cover classes, with the fractions for each cell summing to unity. This dataset has three advantages relative to other products. First, the cover classification addresses distinctions important in studies of the economic dimensions of land use and land cover change, by distinguishing between land uses associated with human and natural processes and among different crops while simultaneously providing a complete representation of cover in each cell. Second, aggregates for the various cover classes in PEEL0 compare more favorably with national-level statistics from USDA Major Land Uses (MLU) census data for 2002 than do other sources. Aggregate cultivated land is within 0.8% of the MLU value, compared with 16.2% for the Modis Land Cover Type (MLCT) primary cover product, 1.8% for the National Land Cover Database (NLCD), and 1.2% for the Agricultural Lands in the Year 2000 (Agland2000) dataset. Aggregate water, natural, and urban cover classes are within 2.2, 1.0, and 6.1%, respectively, compared with deviations of 24.0, 0.01, and 69.2% for MLCT primary and 2.2, 1.35, and 6.1% for NLCD. Third, the spatial distribution of cultivated land is improved; PEEL0’s per cell subpixel fraction root mean square error for cropland relative to NLCD is 0.149 versus 0.175 for the 2001 MLCT primary classification, a 16% improvement. PEEL0’s improved performance is due to the method used in its construc- tion, by which information is combined from multiple sources, including spatial datasets (here, 2001 MLCT, 2001 NLCD, and Agland2000) and agricultural production statistics, to guide both aggregation of multiple fine-scale land use/land cover classifications, decomposition of hybrid classes to separate their constitutive land uses and natural covers, and corrections to classifications to address systematic biases. This procedure is adaptable to other regions, datasets, and requirements. References: Best, N. (2011), "Synthesis of a complete land use/land cover data set for the conterminous United States emphasizing accuracy in area and distribution of agricultural activity", Master’s thesis, Northeastern Illinois University. Best N., et al. (forthcoming), "Synthesis of a complete land use/land cover dataset for the conterminous United States", RDCEP Working Paper Series and elsewhere
DOI: 10.6084/m9.figshare.91401.v5
title: The PEEL_0 ("Partial Equilibrium Economic Land use model, time zero") initialization dataset.

description: We present a new land cover dataset for the conterminous USA called “PEEL0.” It is designed for climate change impact analysis based on land use change at 5 arc-minute resolution. The procedure described herein is adaptable for generating similar datasets for other regions and requirements. PEEL0 is derived from existing data products – the MODIS Land Cover Type (MLCT) and National Land Cover Database (NLCD) – but its design overcomes certain limitations that hinder their use for climate change impact analysis. First, while other products that focus on agriculture neglect non-agricultural land use/land cover (LULC) categories, PEELo contains eight distinct LULC classes in addition to a “crop” class. PEEL0 features subcell area fractions for each class, increasing its depth of information over traditional single-category LULC maps. Second, PEEL0 offers improved accuracy in characterizing cultivated lands, important for quantifying agriculturalactivity. PEEL0 provides a more accurate spatial distribution of cultivated lands over MLCT as compared to reference datasets and improved totals for cultivated land relative to USDA Major Land Uses census data. We present here landcover data for 2001 plus PEEL0's synthesis methodology, which combines information from multiple sources by establishing a common classification scheme at lower spatial resolution. PEEL0 was developed as an initialization dataset for a partial-equilibrium economic land use model (PEEL) that simulates land use/land cover change in response to exogenous agricultural prices and climate change scenarios. We anticipate that similar landcover data products will be of use to other modeling efforts worldwide. References: Best, N. (2011), "Synthesis of a complete land use/land cover data set for the conterminous United States emphasizing accuracy in area and distribution of agricultural activity", Master’s thesis, Northeastern Illinois University. Best, Neil, Elliott, Joshua and Foster, Ian, Synthesis of a Complete Land Use/Land Cover Dataset for the Conterminous United States (May 4, 2012). RDCEP Working Paper No. 12-08. Available at SSRN: http://ssrn.com/abstract=2051158 or http://dx.doi.org/10.2139/ssrn.2051158
DOI: 10.6084/m9.figshare.91401.v7
title: The PEEL0 ("Partial Equilibrium Economic Land use model, time zero") initialization dataset.

description: We present a new land cover dataset for the conterminous USA called “PEEL<sub>0</sub>.” It is designed for climate change impact analysis based on land use change at 5 arc-minute resolution. The procedure described herein is adaptable for generating similar datasets for other regions and requirements. PEEL0 is derived from existing data products – the MODIS Land Cover Type (MLCT) and National Land Cover Database (NLCD) – but its design overcomes certain limitations that hinder their use for climate change impact analysis. First, while other products that focus on agriculture neglect non-agricultural land use/land cover (LULC) categories, PEELo contains eight distinct LULC classes in addition to a “crop” class. PEEL0 features subcell area fractions for each class, increasing its depth of information over traditional single-category LULC maps. Second, PEEL0 offers improved accuracy in characterizing cultivated lands, important for quantifying agriculturalactivity. PEEL0 provides a more accurate spatial distribution of cultivated lands over MLCT as compared to reference datasets and improved totals for cultivated land relative to USDA Major Land Uses census data. We present here landcover data for 2001 plus PEEL0's synthesis methodology, which combines information from multiple sources by establishing a common classification scheme at lower spatial resolution. PEEL0 was developed as an initialization dataset for a partial-equilibrium economic land use model (PEEL) that simulates land use/land cover change in response to exogenous agricultural prices and climate change scenarios. We anticipate that similar landcover data products will be of use to other modeling efforts worldwide. References: Best, N. (2011), "Synthesis of a complete land use/land cover data set for the conterminous United States emphasizing accuracy in area and distribution of agricultural activity", Master’s thesis, Northeastern Illinois University. Best, Neil, Elliott, Joshua and Foster, Ian, Synthesis of a Complete Land Use/Land Cover Dataset for the Conterminous United States (May 4, 2012). RDCEP Working Paper No. 12-08. Available at SSRN: http://ssrn.com/abstract=2051158 or http://dx.doi.org/10.2139/ssrn.2051158
DOI: 10.6084/m9.figshare.91347
title: Notes on Ceratopsians at the National Museum of Natural History - Text

description: As part of my dissertation research and general research program focused on horned dinosaurs, I traveled to the Smithsonian (National Museum of Natural History, USNM, Washington, D.C., USA) in the spring of 2006 for a few days of research. Taxa discussed in these notes include specimens referred to <em>Brachyceratops montanus</em>, <em>Triceratops </em>spp., <em>Pentaceratops sternbergii</em>, <em>Ceratops montanus</em>, and <em>Torosaurus utahensis</em>. This document includes the text assocated with sketches in a separate file (http://hdl.handle.net/10779/56fdf1393aa7ae5dbdf22aedbc171d01).
DOI: 10.6084/m9.figshare.91401.v6
title: The PEEL0 ("Partial Equilibrium Economic Land use model, time zero") initialization dataset.

description: We present a new land cover dataset for the conterminous USA called “PEEL<sub>0</sub>.” It is designed for climate change impact analysis based on land use change at 5 arc-minute resolution. The procedure described herein is adaptable for generating similar datasets for other regions and requirements. PEEL0 is derived from existing data products – the MODIS Land Cover Type (MLCT) and National Land Cover Database (NLCD) – but its design overcomes certain limitations that hinder their use for climate change impact analysis. First, while other products that focus on agriculture neglect non-agricultural land use/land cover (LULC) categories, PEELo contains eight distinct LULC classes in addition to a “crop” class. PEEL0 features subcell area fractions for each class, increasing its depth of information over traditional single-category LULC maps. Second, PEEL0 offers improved accuracy in characterizing cultivated lands, important for quantifying agriculturalactivity. PEEL0 provides a more accurate spatial distribution of cultivated lands over MLCT as compared to reference datasets and improved totals for cultivated land relative to USDA Major Land Uses census data. We present here landcover data for 2001 plus PEEL0's synthesis methodology, which combines information from multiple sources by establishing a common classification scheme at lower spatial resolution. PEEL0 was developed as an initialization dataset for a partial-equilibrium economic land use model (PEEL) that simulates land use/land cover change in response to exogenous agricultural prices and climate change scenarios. We anticipate that similar landcover data products will be of use to other modeling efforts worldwide. References: Best, N. (2011), "Synthesis of a complete land use/land cover data set for the conterminous United States emphasizing accuracy in area and distribution of agricultural activity", Master’s thesis, Northeastern Illinois University. Best, Neil, Elliott, Joshua and Foster, Ian, Synthesis of a Complete Land Use/Land Cover Dataset for the Conterminous United States (May 4, 2012). RDCEP Working Paper No. 12-08. Available at SSRN: http://ssrn.com/abstract=2051158 or http://dx.doi.org/10.2139/ssrn.2051158
DOI: 10.6084/m9.figshare.91349.v1
title: Notes on Ceratopsians at the National Museum of Natural History - Text

description: As part of my dissertation research and general research program focused on horned dinosaurs, I traveled to the Smithsonian (National Museum of Natural History, USNM, Washington, D.C., USA) in the spring of 2006 for a few days of research. Taxa discussed in these notes include specimens referred to <em>Brachyceratops montanus</em>, <em>Triceratops </em>spp., <em>Pentaceratops sternbergii</em>, <em>Ceratops montanus</em>, and <em>Torosaurus utahensis</em>. This document includes sketches that accompany typed notes in a separate file (http://hdl.handle.net/10779/b8705f5143138161342fbbfa2a3c3c5b)
DOI: 10.6084/m9.figshare.91344
title: examples.zip

description: Example script for using partitioning with TNT
DOI: 10.6084/m9.figshare.91344.v1
title: examples.zip

description: Example script for using partitioning with TNT
DOI: 10.6084/m9.figshare.91347.v3
title: Notes on Ceratopsians at the National Museum of Natural History - Text

description: As part of my dissertation research and general research program focused on horned dinosaurs, I traveled to the Smithsonian (National Museum of Natural History, USNM, Washington, D.C., USA) in the spring of 2006 for a few days of research. Taxa discussed in these notes include specimens referred to <em>Brachyceratops montanus</em>, <em>Triceratops </em>spp., <em>Pentaceratops sternbergii</em>, <em>Ceratops montanus</em>, and <em>Torosaurus utahensis</em>. This document includes the text assocated with sketches in a separate file (http://hdl.handle.net/10779/56fdf1393aa7ae5dbdf22aedbc171d01).
DOI: 10.6084/m9.figshare.91349.v2
title: Notes on Ceratopsians at the National Museum of Natural History - Sketches

description: As part of my dissertation research and general research program focused on horned dinosaurs, I traveled to the Smithsonian (National Museum of Natural History, USNM, Washington, D.C., USA) in the spring of 2006 for a few days of research. Taxa discussed in these notes include specimens referred to <em>Brachyceratops montanus</em>, <em>Triceratops </em>spp., <em>Pentaceratops sternbergii</em>, <em>Ceratops montanus</em>, and <em>Torosaurus utahensis</em>.
DOI: 10.6084/m9.figshare.91341
title: Notes on AMNH 5342, a Partial Skull of a Centrosaurine Horned Dinosaur

description: The partial skull of a centrosaurine ceratopsid dinosaur, AMNH 5342 (American Museum of Natural History, New York, NY, USA), was studied as part of my dissertation research. The specimen has never been published to my knowledge (aside from a brief mention in Farke, 2010, and appearing on a list of specimens in Lull, 1933), and thus some additional data on the specimen are presented here. The notes were typed in Microsoft Word, and are presented in unedited format on the following pages.
DOI: 10.6084/m9.figshare.91347.v2
title: Notes on Ceratopsians at the National Museum of Natural History - Text

description: As part of my dissertation research and general research program focused on horned dinosaurs, I traveled to the Smithsonian (National Museum of Natural History, USNM, Washington, D.C., USA) in the spring of 2006 for a few days of research. Taxa discussed in these notes include specimens referred to <em>Brachyceratops montanus</em>, <em>Triceratops </em>spp., <em>Pentaceratops sternbergii</em>, <em>Ceratops montanus</em>, and <em>Torosaurus utahensis</em>. This document includes the text assocated with sketches in a separate file (http://hdl.handle.net/10779/56fdf1393aa7ae5dbdf22aedbc171d01).
DOI: 10.6084/m9.figshare.91341.v2
title: Notes on AMNH 5342, a Partial Skull of a Centrosaurine Horned Dinosaur

description: The partial skull of a centrosaurine ceratopsid dinosaur, AMNH 5342 (American Museum of Natural History, New York, NY, USA), was studied as part of my dissertation research. The specimen has never been published to my knowledge (aside from a brief mention in Farke, 2010, and appearing on a list of specimens in Lull, 1933), and thus some additional data on the specimen are presented here. The notes were typed in Microsoft Word, and are presented in unedited format on the following pages.
DOI: 10.6084/m9.figshare.91341.v1
title: Notes on AMNH 5342, a Partial Skull of a Centrosaurine Horned Dinosaur

description: The partial skull of a centrosaurine ceratopsid dinosaur, AMNH 5342 (American Museum of Natural History, New York, NY, USA), was studied as part of my dissertation research. The specimen has never been published to my knowledge (aside from a brief mention in Farke, 2010, and appearing on a list of specimens in Lull, 1933), and thus some additional data on the specimen are presented here. The notes were typed in Microsoft Word, and are presented in unedited format on the following pages.
DOI: 10.6084/m9.figshare.91338.v1
title: University of the West of England Research Forum poster 2011.pdf

description: A poster presented at the University of the West of Englands annual research forum for applied sciences
DOI: 10.6084/m9.figshare.91322
title: Quantum model for the O-Cu-O cluster inside YBCO superconductor

description: We study a simple quantum model for the O-Cu-O cluster inside the YBCO superconductor. First we reproduce PRL 68, 3236 and J. Sup. Nov. Mag. 20, 603. Afterwards we will study a reigmen with slower hopping electrons (i. e. larger interatomic distances) which could be related to other compounds.
DOI: 10.6084/m9.figshare.91336.v1
title: The Effect of Phosphite Treatments on the Growth and Disease Susceptibility of Agrostis stolonifera L.

description: A paper presented at the European Turfgrass Society conference in Angers, France, April 2010
DOI: 10.6084/m9.figshare.91309
title: Computational Prediction and Validation of Protein Structure and Function in Protein Engineering and Rational Drug Design

description: Skou Fellowship. Danish research foundation
DOI: 10.6084/m9.figshare.91308
title: Prediction and Interpretation of Protein pKa’s using QM/MMf

description: NSF proposal (renewal)
DOI: 10.6084/m9.figshare.91296
title: isotopic-shift-t-07.dat

description: 16O -&gt; 18O isotopic shift (as defined in J. Sup. Nov. Mag. 20, 603) for a model O-Cu-O cluster with an electron hopping of t=0.7eV This is part of my attempt to reproduce J. Sup. Nov. Mag. 20, 603. Nothing new here
DOI: 10.6084/m9.figshare.91303.v1
title: Osmia_phenology.pdf

description: <em>Osmia cornifrons</em> was imported from Japan in 1976 to Maryland, US, for orchard pollination and since then is expanded to almost all Eastern US. Their impacts on native species are unknown. The invader <em>O. cornifrons</em> and the native <em>Osmia lignaria</em> <em>lignaria</em> have now a very similar distribution, they have a similar biology and nest in the same nest structures. Niche overlap may lead to competition between both species. Here, I analyzed the phenological overlap of <em>O. cornifrons</em> with the native species <em>O. lignaria</em> at Hutchington Memorial Forest, New Jersey, USA. I monitored 125 cocoons of each species that wintered exposed to the same natural conditions. Emergence of both species was monitored along 35 days during spring 2011. As showed in the figure, the invader,<em> O. cornifrons</em>, emerged earlier than the native bee (Cox survival analysis: z = -4.9; p &lt; 0.001). I speculate that this can give to the invader an advantage when choosing nesting sites, but at the same time could increase the risk of the invader to late spring frosts.
DOI: 10.6084/m9.figshare.91296.v1
title: isotopic-shift-t-07.dat

description: 16O -&gt; 18O isotopic shift (as defined in J. Sup. Nov. Mag. 20, 603) for a model O-Cu-O cluster with an electron hopping of t=0.7eV This is part of my attempt to reproduce J. Sup. Nov. Mag. 20, 603. Nothing new here
DOI: 10.6084/m9.figshare.91300.v1
title: isotopic shift

description: 16O -&gt; 18O isotopic shift (as defined in J. Sup. Nov. Mag 20, 603) for a model O-Cu-O cluster with varying electron hopping This figure reproduces Fig. 5 from J. Sup. Nov. Mag. 20, 603. Nothing new here
DOI: 10.6084/m9.figshare.91302.v1
title: JSNM-fig1-sorted-ir.jpeg

description: This figure reproduces Fig. 1 from J. Sup. Nov. Mag. 20, 603 These are the energies above the ground state for the first infrared-allowed states in a model O-Cu-O cluster which is present in the YBCO superconductor.
DOI: 10.6084/m9.figshare.91294
title: isotopic-shift-t-02.dat

description: 16O -&gt; 18O isotopic shift (as defined in J. Sup. Nov. Mag. 20, 603) for a model O-Cu-O cluster with an electron hopping of t=0.5eV This is part of my attempt to reproduce J. Sup. Nov. Mag. 20, 603. Nothing new here
DOI: 10.6084/m9.figshare.91295
title: isotopic-shift-t-05.dat

description: 16O -&gt; 18O isotopic shift (as defined in J. Sup. Nov. Mag. 20,603) for a model O-Cu-O cluster with an electron hopping of t=0.5eV This is part of my attempt to reproduce J. Sup. Nov. Mag. 20, 603. Nothing new here