cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/inscriptifact-ouc110862001
title: Persepolis Fortification Anepigraphic Tablet 0403.202, PFAnep 0403.202

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0403.202, PFUT 0403-202 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on left edge, obverse. ❧ [Physical Object Note:] Cracks on bottom edge, obverse, right edge, reverse upper edge. Upper left corner obverse broken. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110863145
title: Persepolis Fortification Anepigraphic Tablet 0403.204, PFAnep 0403.204

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0403.204, PFUT 0403-204 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on left edge, obverse. ❧ [Physical Object Note:] Some damage on reverse.
DOI: 10.25549/inscriptifact-ouc110861992
title: Persepolis Fortification Anepigraphic Tablet 0403.202, PFAnep 0403.202

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0403.202, PFUT 0403-202 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on left edge, obverse. ❧ [Physical Object Note:] Cracks on bottom edge, obverse, right edge, reverse upper edge. Upper left corner obverse broken. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110863135
title: Persepolis Fortification Anepigraphic Tablet 0403.204, PFAnep 0403.204

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0403.204, PFUT 0403-204 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on left edge, obverse. ❧ [Physical Object Note:] Some damage on reverse.
DOI: 10.25549/inscriptifact-ouc110861983
title: Persepolis Fortification Anepigraphic Tablet 0403.202, PFAnep 0403.202

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0403.202, PFUT 0403-202 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on left edge, obverse. ❧ [Physical Object Note:] Cracks on bottom edge, obverse, right edge, reverse upper edge. Upper left corner obverse broken. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110863122
title: Persepolis Fortification Anepigraphic Tablet 0403.204, PFAnep 0403.204

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0403.204, PFUT 0403-204 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on left edge, obverse. ❧ [Physical Object Note:] Some damage on reverse.
DOI: 10.25549/inscriptifact-ouc110861979
title: Persepolis Fortification Anepigraphic Tablet 0403.202, PFAnep 0403.202

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0403.202, PFUT 0403-202 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on left edge, obverse. ❧ [Physical Object Note:] Cracks on bottom edge, obverse, right edge, reverse upper edge. Upper left corner obverse broken. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110863053
title: Persepolis Fortification Anepigraphic Tablet 0403.204, PFAnep 0403.204

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0403.204, PFUT 0403-204 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on left edge, obverse. ❧ [Physical Object Note:] Some damage on reverse.
DOI: 10.25549/inscriptifact-ouc110861921
title: Persepolis Fortification Anepigraphic Tablet 0403.202, PFAnep 0403.202

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0403.202, PFUT 0403-202 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on left edge, obverse. ❧ [Physical Object Note:] Cracks on bottom edge, obverse, right edge, reverse upper edge. Upper left corner obverse broken. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110863043
title: Persepolis Fortification Anepigraphic Tablet 0403.204, PFAnep 0403.204

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0403.204, PFUT 0403-204 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on left edge, obverse. ❧ [Physical Object Note:] Some damage on reverse.
DOI: 10.25549/inscriptifact-ouc110862341
title: Persepolis Fortification Anepigraphic Tablet 0403.203, PFAnep 0403.203

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0403.203, PFUT 0403-203 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on obverse, upper edge. ❧ [Physical Object Note:] Upper left corner, right edge, broken off. Crack on right of obverse. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110866417
title: Persepolis Fortification Anepigraphic Tablet 0407.201, PFAnep 0407.201

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0407.201, PFUT 0407-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impression on left edge. ❧ [Physical Object Note:] Upper left corner broken. Hole through the middle of the tablet. Deposits on obverse. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110866409
title: Persepolis Fortification Anepigraphic Tablet 0407.201, PFAnep 0407.201

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0407.201, PFUT 0407-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impression on left edge. ❧ [Physical Object Note:] Upper left corner broken. Hole through the middle of the tablet. Deposits on obverse. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110862340
title: Persepolis Fortification Anepigraphic Tablet 0403.203, PFAnep 0403.203

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0403.203, PFUT 0403-203 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on obverse, upper edge. ❧ [Physical Object Note:] Upper left corner, right edge, broken off. Crack on right of obverse. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110862333
title: Persepolis Fortification Anepigraphic Tablet 0403.203, PFAnep 0403.203

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0403.203, PFUT 0403-203 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on obverse, upper edge. ❧ [Physical Object Note:] Upper left corner, right edge, broken off. Crack on right of obverse. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110866351
title: Persepolis Fortification Anepigraphic Tablet 0407.201, PFAnep 0407.201

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0407.201, PFUT 0407-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impression on left edge. ❧ [Physical Object Note:] Upper left corner broken. Hole through the middle of the tablet. Deposits on obverse. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110862328
title: Persepolis Fortification Anepigraphic Tablet 0403.203, PFAnep 0403.203

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0403.203, PFUT 0403-203 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on obverse, upper edge. ❧ [Physical Object Note:] Upper left corner, right edge, broken off. Crack on right of obverse. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110866348
title: Persepolis Fortification Anepigraphic Tablet 0407.201, PFAnep 0407.201

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0407.201, PFUT 0407-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impression on left edge. ❧ [Physical Object Note:] Upper left corner broken. Hole through the middle of the tablet. Deposits on obverse. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110866340
title: Persepolis Fortification Anepigraphic Tablet 0407.201, PFAnep 0407.201

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0407.201, PFUT 0407-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impression on left edge. ❧ [Physical Object Note:] Upper left corner broken. Hole through the middle of the tablet. Deposits on obverse. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110862293
title: Persepolis Fortification Anepigraphic Tablet 0403.203, PFAnep 0403.203

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0403.203, PFUT 0403-203 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on obverse, upper edge. ❧ [Physical Object Note:] Upper left corner, right edge, broken off. Crack on right of obverse. (Upper and bottom edges may be reversed)
DOI: 10.15468/dl.p6duy4
title: Occurrence Download

description: A dataset containing 779 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingCountry is Canada",
 "TaxonKey is one of (Artemisia stelleriana Besser)"
 ]
}

 The dataset includes 779 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032254-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k5dqlh
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044540-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yt4292
title: Occurrence Download

description: A dataset containing 66034420 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-117.29553 32.44263,-113.45032 32.73926,-114.46106 36.22192,-118.59192 41.4624,-120.09705 43.91235,-124.83215 44.71436,-125.12878 40.07813,-122.05261 35.32104,-119.47083 32.87109,-117.29553 32.44263))",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 66034420 records from 119 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0259689-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ifqs3q
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054424-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qgxjji
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044459-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yybkzx
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Impatiens fianarantsoae Eb.Fisch. & Raheliv."
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032264-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.85o5e1
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033359-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7xxj5j
title: Occurrence Download

description: A dataset containing 1149620033 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 2010-2021"
 ]
}

 The dataset includes 1149620033 records from 13956 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0311212-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17155226
title: Osmolyte structural and thermodynamic effects across the protein folding landscape

description:  

Supplementary data files for the article

 

"Osmolyte structural and thermodynamic effects across the protein folding landscape"

Ander Francisco Pereira and Leandro Martínez

Institute of Chemistry and Center for Computing in Engineering & Sciences - Universidade Estadual de Campinas (UNICAMP)

https://doi.org/10.1021/jacsau.5c00813

 

Contains:

 

1. PULCHRA generated structures, equilibrated structures, and resulting solvation analyses performed with ComplexMixtures.jl for all 5000 models of each protein/cosolvent system.

These files contain, for each protein (`SH3` or `BdpA`), and for each cosolvent `Urea` or `TMAO`: a) the reconstruction of the SBM model by Pulchra. b) The equilibrated structure model, used to initiate production runs for the simulations of solvation. c) The final solvation analyzes of solvation, performed with ComplexMixtures.jl, including two files: `results_water.json` and `results_urea.json` or `results_tmao.json`, which contain the analyzes of distributions of each solvent component, performed over the trajectories.

Files:

SH3_TMAO.zip

SH3_Urea.zip

BdpA_TMAO.zip

BdpA_Urea.zip

 

2. Resulting solvation analsyses with ComplexMixtures.jl for all simulations performed for the determination of the transfer free energies:

The files contain, for each concentration, the output of the ComplexMixtures.jl calculation that appends the distribution functions and results of all simulation replicas for that concentration. The files are in the ".json" format, and must be read with `ComplexMixtures.load("file.json")`. Files with `Water` identifiers correspond to the calculations for the water as the solvent. The files without `Water` correspond to computing the distributions considering the cosolute (`Urea` or `TMAO`) as the solvents. `SH3` and `BdpA` indicate which protein is analyzed.

Files:

SH3_ComplexMixtures-Transfer-WaterUrea.zip    SH3_ComplexMixtures-Transfer-WaterTMAO.zipSH3_ComplexMixtures-Transfer-Urea.zipSH3_ComplexMixtures-Transfer-TMAO.zip

BdpA_ComplexMixtures-Transfer-WaterUrea.zip    BdpA_ComplexMixtures-Transfer-WaterTMAO.zipBdpA_ComplexMixtures-Transfer-Urea.zipBdpA_ComplexMixtures-Transfer-TMAO.zip

 

3. CSV data tables with the m-values and zeta-angle analyses for all 5000 models of each protein/cosolvent system, with:

3.1. mvalue-estimates and contributions of the side-chains and backbones for the estimates.

3.2. Exposed surface area for every type of residue, in each of the models.

3.4. fraction of zeta angles within 2 standard deviations of expected values, computed for the PULCHRA and equlibrated models.

Files:

SH3_mvalues_zeta.zip

BdpA_mvalues_zeta.zip

 

Additional files, simulation trajectories, and analysis scripts may be obtained upon request to authors.