cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3691633_d9.v1
title: Additional file 4: Table S2. of The transcriptional landscape of basidiosporogenesis in mature Pisolithus microcarpus basidiocarp

description: List of differentially expressed genes between compartments of the Pisolithus microcarpus basidiocarp. UP: Unconsolidated peridioles, YP: young peridioles, MP: Mature peridioles, IS: Internal spores, and FS: Free spores. (XLSX 363 kb)
DOI: 10.6084/m9.figshare.c.3691633_d9
title: Additional file 4: Table S2. of The transcriptional landscape of basidiosporogenesis in mature Pisolithus microcarpus basidiocarp

description: List of differentially expressed genes between compartments of the Pisolithus microcarpus basidiocarp. UP: Unconsolidated peridioles, YP: young peridioles, MP: Mature peridioles, IS: Internal spores, and FS: Free spores. (XLSX 363 kb)
DOI: 10.15468/dl.kv8uu2
title: Occurrence Download

description: A dataset containing 1471 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Achirus lineatus (Linnaeus, 1758)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1471 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038113-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bmc97c
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-86.93432 21.14082,-86.82027 21.14082,-86.82027 21.20983,-86.93432 21.20983,-86.93432 21.14082))",
 "HasCoordinate is true",
 "IucnRedListCategory is one of (EN, CR)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 38 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038114-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3691699_d4.v1
title: Additional file 3: Table S1. of 2.7 million samples genotyped for HLA by next generation sequencing: lessons learned

description: Average monthly primer dimer rates split by workflows and sequencing instruments. (CSV 2 kb)
DOI: 10.6084/m9.figshare.c.3691699_d4
title: Additional file 3: Table S1. of 2.7 million samples genotyped for HLA by next generation sequencing: lessons learned

description: Average monthly primer dimer rates split by workflows and sequencing instruments. (CSV 2 kb)
DOI: 10.6084/m9.figshare.c.3691708_d4.v1
title: Additional file 2: Table S1. of Obesity accelerates epigenetic aging in middle-aged but not in elderly individuals

description: Gender-specific correlations of ΔAGE and BMI in three age groups: the young adults (BMI1986 and ΔAGE 1986), the middle-aged (BMI 2011 and ΔAGE 2011), and the nonagenarians (BMI 2010 and ΔAGE 2010). The correlation is significant only in middle-aged males and females. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3691708_d4
title: Additional file 2: Table S1. of Obesity accelerates epigenetic aging in middle-aged but not in elderly individuals

description: Gender-specific correlations of ΔAGE and BMI in three age groups: the young adults (BMI1986 and ΔAGE 1986), the middle-aged (BMI 2011 and ΔAGE 2011), and the nonagenarians (BMI 2010 and ΔAGE 2010). The correlation is significant only in middle-aged males and females. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3691717_d1
title: Additional file 2: of VREX: an open-source toolbox for creating 3D virtual reality experiments

description: VREX_1_2_build_64bit.7z. The standalone 64bit executable of the VREX toolbox. (7z 41330 kb)
DOI: 10.6084/m9.figshare.c.3691717_d1.v1
title: Additional file 2: of VREX: an open-source toolbox for creating 3D virtual reality experiments

description: VREX_1_2_build_64bit.7z. The standalone 64bit executable of the VREX toolbox. (7z 41330 kb)
DOI: 10.6084/m9.figshare.c.3691717_d2.v1
title: Additional file 1: of VREX: an open-source toolbox for creating 3D virtual reality experiments

description: VREX_1_2_source.7z. The source code of the VREX toolbox as an Unity 5.4.1 project folder. (7z 1178 kb)
DOI: 10.6084/m9.figshare.c.3691717_d2
title: Additional file 1: of VREX: an open-source toolbox for creating 3D virtual reality experiments

description: VREX_1_2_source.7z. The source code of the VREX toolbox as an Unity 5.4.1 project folder. (7z 1178 kb)
DOI: 10.6084/m9.figshare.c.3692884_d1.v1
title: Additional file 5: of Variant discovery in the sheep milk transcriptome using RNA sequencing

description: Title of data: Genomic regions containing the QTL related to milk protein percentage, milk fat percentage and milk yield. Description of data: Worksheet providing the coordinates of the genomic regions containing the QTL related to milk protein percentage, milk fat percentage and milk yield, based on the annotation of the SheepQTLdb. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3692884_d1
title: Additional file 5: of Variant discovery in the sheep milk transcriptome using RNA sequencing

description: Title of data: Genomic regions containing the QTL related to milk protein percentage, milk fat percentage and milk yield. Description of data: Worksheet providing the coordinates of the genomic regions containing the QTL related to milk protein percentage, milk fat percentage and milk yield, based on the annotation of the SheepQTLdb. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3692884_d5.v1
title: Additional file 7: of Variant discovery in the sheep milk transcriptome using RNA sequencing

description: Title of data: Coordinates of the milk fat genes genomic regions. Description of data: Worksheet providing the coordinates of the genomic regions containing the genes related to milk fat metabolism. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3692884_d5
title: Additional file 7: of Variant discovery in the sheep milk transcriptome using RNA sequencing

description: Title of data: Coordinates of the milk fat genes genomic regions. Description of data: Worksheet providing the coordinates of the genomic regions containing the genes related to milk fat metabolism. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3692914_d1.v1
title: Additional file 1: of Critically appraised topic on adverse food reactions of companion animals (3): prevalence of cutaneous adverse food reactions in dogs and cats

description: Specific data on the prevalence of CAFRs among dogs with various conditions. (XLSX 45Â kb)
DOI: 10.15468/dl.j5myav
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acipenser medirostris Ayres, 1854",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 20 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038116-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3692884_d6.v1
title: Additional file 3: of Variant discovery in the sheep milk transcriptome using RNA sequencing

description: Title of data: Results of the KEGG pathway enrichment analysis with the genes in QTL regions containing relevant functional variants. Description of data: Worksheet providing the results of the KEGG pathway enrichment analysis performed with the genes containing variants with functional interest. The file provides the enriched KEGG pathways, with the p-values and the genes grouped within each pathway. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3692914_d1
title: Additional file 1: of Critically appraised topic on adverse food reactions of companion animals (3): prevalence of cutaneous adverse food reactions in dogs and cats

description: Specific data on the prevalence of CAFRs among dogs with various conditions. (XLSX 45Â kb)
DOI: 10.6084/m9.figshare.c.3692884_d6
title: Additional file 3: of Variant discovery in the sheep milk transcriptome using RNA sequencing

description: Title of data: Results of the KEGG pathway enrichment analysis with the genes in QTL regions containing relevant functional variants. Description of data: Worksheet providing the results of the KEGG pathway enrichment analysis performed with the genes containing variants with functional interest. The file provides the enriched KEGG pathways, with the p-values and the genes grouped within each pathway. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3692914_d2.v1
title: Additional file 2: of Critically appraised topic on adverse food reactions of companion animals (3): prevalence of cutaneous adverse food reactions in dogs and cats

description: Specific data on the prevalence of CAFRs among cats with various conditions. (XLSX 40Â kb)
DOI: 10.6084/m9.figshare.c.3692884_d7.v1
title: Additional file 1: of Variant discovery in the sheep milk transcriptome using RNA sequencing

description: Title of data: Variants detected within the sheep milk transcriptome. Description of data: Worksheet providing all the variants detected within the milk somatic cells transcriptome. (XLSX 60502 kb)
DOI: 10.6084/m9.figshare.c.3692914_d2
title: Additional file 2: of Critically appraised topic on adverse food reactions of companion animals (3): prevalence of cutaneous adverse food reactions in dogs and cats

description: Specific data on the prevalence of CAFRs among cats with various conditions. (XLSX 40Â kb)
DOI: 10.6084/m9.figshare.c.3692884_d7
title: Additional file 1: of Variant discovery in the sheep milk transcriptome using RNA sequencing

description: Title of data: Variants detected within the sheep milk transcriptome. Description of data: Worksheet providing all the variants detected within the milk somatic cells transcriptome. (XLSX 60502 kb)
DOI: 10.6084/m9.figshare.c.3692947_d1.v1
title: Additional file 1: of Developing quality indicators for physician-staffed emergency medical services: a consensus process

description: “Definition catalogue from the EQUIPE-project”. This explanation and elaboration document contains the definitions of all quality indicators, as well as explanation of the response alternatives where necessary. (ZIP 134 kb)
DOI: 10.6084/m9.figshare.c.3692947_d1
title: Additional file 1: of Developing quality indicators for physician-staffed emergency medical services: a consensus process

description: “Definition catalogue from the EQUIPE-project”. This explanation and elaboration document contains the definitions of all quality indicators, as well as explanation of the response alternatives where necessary. (ZIP 134 kb)
DOI: 10.6084/m9.figshare.c.3692953_d1
title: Additional files 4: of Effect of myeloid differentiation primary response gene 88 on expression profiles of genes during the development and progression of Helicobacter-induced gastric cancer

description: Text File: Probe Profile of Microarray Data used in analysis of gene expression. (TXT 30459 kb)
DOI: 10.6084/m9.figshare.c.3692953_d1.v1
title: Additional files 4: of Effect of myeloid differentiation primary response gene 88 on expression profiles of genes during the development and progression of Helicobacter-induced gastric cancer

description: Text File: Probe Profile of Microarray Data used in analysis of gene expression. (TXT 30459 kb)
DOI: 10.6084/m9.figshare.c.3692956_d1.v1
title: Additional file 10: of An integrative metabolomics and transcriptomics study to identify metabolic alterations in aged skin of humans in vivo

description: Code for data analysis Matlab and R code to perform the gene expression and locality analysis performed in this manuscript. (ZIP 36968 kb)
DOI: 10.6084/m9.figshare.c.3692956_d1
title: Additional file 10: of An integrative metabolomics and transcriptomics study to identify metabolic alterations in aged skin of humans in vivo

description: Code for data analysis Matlab and R code to perform the gene expression and locality analysis performed in this manuscript. (ZIP 36968 kb)
DOI: 10.6084/m9.figshare.c.3692959_d1.v1
title: Additional file 1: Table S1. of Highly predictive SNP markers for efficient selection of the wheat leaf rust resistance gene Lr16

description: PCR primers for DNA markers used in the study. Table S2. Lr16 haplotype panel sorted by Lr16 status, country of origin, marketing class, and cultivar/line name. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3692962_d1.v1
title: Additional file 2: Table S1. of Transcriptomic signatures shaped by cell proportions shed light on comparative developmental biology

description: Genes differentially expressed in ED14.5–18.0 molars. An excel file with data for genes differentially expressed under various conditions in our study. Sheet 1: content and legend. Sheet 2: data for genes which are significantly differentially expressed in at least one out of three comparisons done with DEseq2 (eight stages taken as replicates; eight stages taken as replicates, taking time into account as a quantitative variable; one out of the seven pairs of consecutive stages taken as replicates): log ratio, P value, mean basemean. (XLSX 422 kb)
DOI: 10.6084/m9.figshare.c.3692953_d5.v1
title: Additional files 1:Table S1. of Effect of myeloid differentiation primary response gene 88 on expression profiles of genes during the development and progression of Helicobacter-induced gastric cancer

description: Excel file: Data of upregulated and downregulated genes in Myd88 â  /â   and WT mice at 25 and 47Â weeks. (XLSX 4782 kb)
DOI: 10.6084/m9.figshare.c.3692956_d4.v1
title: Additional file 2: of An integrative metabolomics and transcriptomics study to identify metabolic alterations in aged skin of humans in vivo

description: Quantile normalized non-targeted metabolomics data of epidermal tissue samples of young and old donors. (XLS 1394 kb)
DOI: 10.6084/m9.figshare.c.3692953_d5
title: Additional files 1:Table S1. of Effect of myeloid differentiation primary response gene 88 on expression profiles of genes during the development and progression of Helicobacter-induced gastric cancer

description: Excel file: Data of upregulated and downregulated genes in Myd88 â  /â   and WT mice at 25 and 47Â weeks. (XLSX 4782 kb)
DOI: 10.6084/m9.figshare.c.3692956_d4
title: Additional file 2: of An integrative metabolomics and transcriptomics study to identify metabolic alterations in aged skin of humans in vivo

description: Quantile normalized non-targeted metabolomics data of epidermal tissue samples of young and old donors. (XLS 1394 kb)
DOI: 10.6084/m9.figshare.c.3692986_d1.v1
title: MOESM1 of Mitotic counts in breast cancer should be standardized with a uniform sample area

description: Additional file 1: Table 1. Compiled raw data for all areas. Figure 1. Fraction incorrectly classified by mitotic count/mm2 for total area of 1.26, 3.74, 5, 10, 15 and 20 mm2. Figure 2. Fraction incorrectly classified by mitotic count/mm2 for total area of 1.26, 3.74, 5, 10, and 15 mm2. Figure 3. Fraction incorrectly classified by mitotic count/mm2 for total area of 1.26, 3.74, 5, and 10 mm2. Figure 4. Fraction incorrectly classified by mitotic count/mm2 for total area of 1.26, 3.74, and 5 mm2. Figure 5. Fraction incorrectly classified by mitotic count/mm2 for total area of 1.26, 3.74, and 5 mm2. Figure 6. Fraction correctly classified by mitotic count/mm2 for total area 1.26, 3.74, 5 and 10 mm2. Table 2. Raw data generated for area of 1.26 mm2. Table 3. Raw data generated for area of 3.74 mm2. Table 4. Raw data generated for 5 mm2. Table 5. Raw data generated for 10 mm2. Table 6. Raw data generated for area 15 mm2. Table 7. Raw data generated for area of 20 mm2.
DOI: 10.6084/m9.figshare.c.3692986_d1
title: MOESM1 of Mitotic counts in breast cancer should be standardized with a uniform sample area

description: Additional file 1: Table 1. Compiled raw data for all areas. Figure 1. Fraction incorrectly classified by mitotic count/mm2 for total area of 1.26, 3.74, 5, 10, 15 and 20 mm2. Figure 2. Fraction incorrectly classified by mitotic count/mm2 for total area of 1.26, 3.74, 5, 10, and 15 mm2. Figure 3. Fraction incorrectly classified by mitotic count/mm2 for total area of 1.26, 3.74, 5, and 10 mm2. Figure 4. Fraction incorrectly classified by mitotic count/mm2 for total area of 1.26, 3.74, and 5 mm2. Figure 5. Fraction incorrectly classified by mitotic count/mm2 for total area of 1.26, 3.74, and 5 mm2. Figure 6. Fraction correctly classified by mitotic count/mm2 for total area 1.26, 3.74, 5 and 10 mm2. Table 2. Raw data generated for area of 1.26 mm2. Table 3. Raw data generated for area of 3.74 mm2. Table 4. Raw data generated for 5 mm2. Table 5. Raw data generated for 10 mm2. Table 6. Raw data generated for area 15 mm2. Table 7. Raw data generated for area of 20 mm2.
DOI: 10.6084/m9.figshare.c.3692986_d2.v1
title: MOESM4 of Mitotic counts in breast cancer should be standardized with a uniform sample area

description: Additional file 4. GNU octave computer code â  mitotic_score_experiment_v7c.mâ  .
DOI: 10.6084/m9.figshare.c.3692986_d2
title: MOESM4 of Mitotic counts in breast cancer should be standardized with a uniform sample area

description: Additional file 4. GNU octave computer code â  mitotic_score_experiment_v7c.mâ  .
DOI: 10.6084/m9.figshare.c.3692986_d3.v1
title: MOESM2 of Mitotic counts in breast cancer should be standardized with a uniform sample area

description: Additional file 2: Table 1: Recommended mitotic count points and fields to count. Table 2. Revised mitotic cut points. Table 3. confirmation of area equivalence. Figure 1. plot of variation of mitotic count per area as a function of field diameter.
DOI: 10.6084/m9.figshare.c.3692986_d3
title: MOESM2 of Mitotic counts in breast cancer should be standardized with a uniform sample area

description: Additional file 2: Table 1: Recommended mitotic count points and fields to count. Table 2. Revised mitotic cut points. Table 3. confirmation of area equivalence. Figure 1. plot of variation of mitotic count per area as a function of field diameter.
DOI: 10.15468/dl.rq6r9p
title: Occurrence Download

description: A dataset containing 705 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aetobatus narinari (Euphrasen, 1790)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 705 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038117-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3693004_d3.v1
title: Additional file 1: of Revisiting phylogenetic signal; strong or negligible impacts of polytomies and branch length information?

description: Appendix 1. (extra analyses). (ZIP 4769 kb)
DOI: 10.6084/m9.figshare.c.3693001_d2
title: Additional file 2: of Zoonotic necrotizing myositis caused by Streptococcus equi subsp. zooepidemicus in a farmer

description: Data sheets – Proteins and Peptides. Results from the proteomic analysis; Streptococcus equi subsp. zooepidemicus proteins detected at 1% FDR and corresponding peptide sequences detected at 1% FDR. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.c.3693004_d3
title: Additional file 1: of Revisiting phylogenetic signal; strong or negligible impacts of polytomies and branch length information?

description: Appendix 1. (extra analyses). (ZIP 4769 kb)
DOI: 10.6084/m9.figshare.c.3693010_d1.v1
title: MOESM3 of Distinct patterns and prognostic values of tumor-infiltrating macrophages in hepatocellular carcinoma and gastric cancer

description: Additional file 3. The original data of GC cohort with clinicopathological variables.
DOI: 10.6084/m9.figshare.c.3692956_d10.v1
title: Additional file 1: of An integrative metabolomics and transcriptomics study to identify metabolic alterations in aged skin of humans in vivo

description: Details on epidermal tissue donors. x indicates that sample were included in metabolomics, transcriptomic or the integrated analysis, respectively. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3692956_d10
title: Additional file 1: of An integrative metabolomics and transcriptomics study to identify metabolic alterations in aged skin of humans in vivo

description: Details on epidermal tissue donors. x indicates that sample were included in metabolomics, transcriptomic or the integrated analysis, respectively. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3693010_d1
title: MOESM3 of Distinct patterns and prognostic values of tumor-infiltrating macrophages in hepatocellular carcinoma and gastric cancer

description: Additional file 3. The original data of GC cohort with clinicopathological variables.
DOI: 10.6084/m9.figshare.c.3693010_d3.v1
title: MOESM2 of Distinct patterns and prognostic values of tumor-infiltrating macrophages in hepatocellular carcinoma and gastric cancer

description: Additional file 2. The original data of HCC cohort with clinicopathological variables.
DOI: 10.6084/m9.figshare.c.3693010_d3
title: MOESM2 of Distinct patterns and prognostic values of tumor-infiltrating macrophages in hepatocellular carcinoma and gastric cancer

description: Additional file 2. The original data of HCC cohort with clinicopathological variables.
DOI: 10.6084/m9.figshare.c.3693031_d3
title: Additional file 2: of Identification of effector-like proteins in Trichoderma spp. and role of a hydrophobin in the plant-fungus interaction and mycoparasitism

description: Datasets. Lists of proteins that constitute the negative, positive and evaluation datasets used for the comparison of the programs that predict extracellular proteins. (XLSX 20ย�kb)
DOI: 10.6084/m9.figshare.c.3693016_d9.v1
title: MOESM1 of Decoupling the downstream effects of germline nuclear RNAi reveals that H3K9me3 is dispensable for heritable RNAi and the maintenance of endogenous siRNA-mediated transcriptional silencing in Caenorhabditis elegans

description: Additional file 1: Table S1. List of experiments, libraries, sequencing depth and barcodes used in this study.
DOI: 10.6084/m9.figshare.c.3693016_d9
title: MOESM1 of Decoupling the downstream effects of germline nuclear RNAi reveals that H3K9me3 is dispensable for heritable RNAi and the maintenance of endogenous siRNA-mediated transcriptional silencing in Caenorhabditis elegans

description: Additional file 1: Table S1. List of experiments, libraries, sequencing depth and barcodes used in this study.
DOI: 10.6084/m9.figshare.c.3693031_d5.v1
title: Additional file 5: of Identification of effector-like proteins in Trichoderma spp. and role of a hydrophobin in the plant-fungus interaction and mycoparasitism

description: Primers. Complete list of primers used in this study. (XLSX 14ย�kb)
DOI: 10.6084/m9.figshare.c.3693031_d5
title: Additional file 5: of Identification of effector-like proteins in Trichoderma spp. and role of a hydrophobin in the plant-fungus interaction and mycoparasitism

description: Primers. Complete list of primers used in this study. (XLSX 14ย�kb)
DOI: 10.6084/m9.figshare.c.3693049_d12
title: MOESM9 of A novel Pfs38 protein complex on the surface of Plasmodium falciparum blood-stage merozoites

description: Additional file 9. Full list of proteins identified in LC-MS/MS analysis for immunoprecipitation with preimmune IgG.
DOI: 10.6084/m9.figshare.c.3693049_d13
title: MOESM6 of A novel Pfs38 protein complex on the surface of Plasmodium falciparum blood-stage merozoites

description: Additional file 6. Full list of proteins identified in LC-MS/MS analysis for immunoprecipitation with Îą-Pfs12 antibody.
DOI: 10.6084/m9.figshare.c.3693052_d2.v1
title: MOESM3 of Differential regulation of riboflavin supply genes in Vibrio cholerae

description: Additional file 3. List of primers used in this study.