cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.8wxrf9
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acilepis ornata (Talbot) H.Rob. & Skvarla"
 ]
}

 The dataset includes 28 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013363-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2o07ur
title: Occurrence Download

description: A dataset containing 44196 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hydrocharis morsus-ranae L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 44196 records from 159 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006234-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p8dfg5
title: Occurrence Download

description: A dataset containing 1092 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico",
 "DatasetKey is Catálogo de los mamíferos de México en resguardo de The Natural History Museum (London), Inglaterra",
 "Geometry POLYGON((-133.83343 11.27208,-70.16657 11.27208,-70.16657 36.72792,-133.83343 36.72792,-133.83343 11.27208))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (CR, EN, VU, NT, LC, NE, DD)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1092 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008988-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gdcnzr
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acidosasa notata (Z.P.Wang & G.H.Ye) S.S.You"
 ]
}

 The dataset includes 38 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013321-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oshgdz
title: Occurrence Download

description: A dataset containing 2562 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Living Specimen",
 "Country is Korea, Republic of"
 ]
}

 The dataset includes 2562 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006234-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zudjmt
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cotula laxa DC."
 ]
}

 The dataset includes 50 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009005-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lsscbj
title: Occurrence Download

description: A dataset containing 271 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aotus lemurinus I.Geoffroy Saint-Hilaire, 1843"
 ]
}

 The dataset includes 271 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006234-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qgz9u6
title: Occurrence Download

description: A dataset containing 209 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cotula hispida (DC.) Harv."
 ]
}

 The dataset includes 209 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008992-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a42tdm
title: Occurrence Download

description: A dataset containing 23272 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cladonia portentosa (Dufour) Coem.",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 23272 records from 128 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013351-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y4lkoo
title: Occurrence Download

description: A dataset containing 351 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eufriesea pulchra (Smith, 1854)"
 ]
}

 The dataset includes 351 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006235-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6c8htz
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cotula lineariloba (DC.) Hilliard"
 ]
}

 The dataset includes 87 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009017-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.686zpv
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Tillandsia eizii L.B.Sm."
 ]
}

 The dataset includes 75 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022929-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fu3648
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium scamandris Zahn"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026812-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3v0awm
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dactylorhiza angustata (Arv.-Touv.) D.Tyteca & Gathoye",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 63 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006235-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vgq2wq
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acilepis peninsularis (C.B.Clarke) H.Rob. & Skvarla"
 ]
}

 The dataset includes 11 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013367-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bj652g
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crocus antalyensioides Rukšāns"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009010-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7q2e6y
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Verbascum omanense Hub.-Mor."
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006235-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nn69vu
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gloydius caucasicus (Nikolsky, 1916)"
 ]
}

 The dataset includes 29 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039723-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pz2euf
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cotula kotschyi Benth. & Hook.fil."
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008999-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c5h6e7
title: Occurrence Download

description: A dataset containing 6875198 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is one of (Albania, Andorra, Armenia, Austria, Azerbaijan, Belarus, Bosnia and Herzegovina, Bulgaria, Croatia, Cyprus, Czechia, Estonia, Georgia, Greece)",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 6875198 records from 709 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039143-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60893/figshare.jcp.28107338
title: Details on charge calculations and the developed force field

description: Tar file containing LAMMPS input/output files for implementing the force field for functionalized hBN and cp2k input/output files for partial charge calculations
DOI: 10.60893/figshare.jcp.28107341
title: Supplementary Information

description: Details on the DFT-based partial charge calculations, partial charge distributions for the considered hBN nanopores, snapshots of the AIMD simulations demonstrating the functionalization of hBN nanopores, information about the FF used in the water desalination simulations, individual ion rejection data, analysis of the stability of MD simulations performed using the proposed force field, analysis of water permeance and salt rejection using longer simulation times
DOI: 10.15468/dl.wprxzy
title: Occurrence Download

description: A dataset containing 5024 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "Geometry POLYGON((-109.50067 36.23449,-99.76507 36.04877,-99.99505 41.13779,-108.65743 41.13779,-109.50067 36.23449))",
 "HasGeospatialIssue is false",
 "TaxonKey is Pinus ponderosa Douglas ex C.Lawson"
 ]
}

 The dataset includes 5024 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003860-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4dfz77
title: Occurrence Download

description: A dataset containing 4226 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cercidiphyllum japonicum Siebold & Zucc., Cercidiphyllum magnificum (Nakai) Nakai)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4226 records from 138 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003861-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gr35ud
title: Occurrence Download

description: A dataset containing 2058 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nothofagus dombeyi (Mirb.) Oerst."
 ]
}

 The dataset includes 2058 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003862-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sb378s
title: Occurrence Download

description: A dataset containing 86554 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fraxinus angustifolia Vahl"
 ]
}

 The dataset includes 86554 records from 848 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003859-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60635/c3zc72
title: Bocas del Toro, Platform Tower_Precipitation

description: Precipitation, Interval Total
 Bocas del Toro Research Station, Marine platform tower
 Location: 9.351553°, -82.256565°
 Sensors located on a platform located approximately 60m from the end of the station’s dock. Platform includes meteorological tower, Sea Surface Temperature probe and several sea level sensors.The current platform was built in 2012 to replace the original platform built in 2002.
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Bocas_del_Toro_Platform_Tower_Precipitation/10042520
DOI: 10.5281/zenodo.14577439
title: Antimicrobial Peptides Selectively Target Malaria Parasites by a Cholesterol-Dependent Mechanism

description: Hundreds of thousands die annually from malaria caused by Plasmodium falciparum (Pf), with the emergence of drug-resistant parasites hindering eradication efforts. Antimicrobial peptides (AMPs) are known for their ability to disrupt pathogen membranes without targeting specific receptors, thereby reducing the chance of drug resistance. However, their effectiveness and the biophysical mechanisms by which they target the intracellular parasite remain unexplored. Here, by using native and synthetic AMPs, we discovered a selective mechanism that underlies the anti-malaria activity. Remarkably, the AMPs exclusively interact with Pf-infected Red Blood Cells (Pf-iRBCs), disrupting the cytoskeletal network and reaching the enclosed parasites with correlation to their activity. Moreover, we showed that the unique feature of reduced cholesterol content in the membrane of the infected host makes Pf-iRBCs susceptible to AMPs. Overall, this work highlights the Achilles’ heel of malaria parasite and demonstrates the power of AMPs as potential antimalarial drugs with reduced risk of resistance.
DOI: 10.5281/zenodo.14577440
title: Antimicrobial Peptides Selectively Target Malaria Parasites by a Cholesterol-Dependent Mechanism

description: Hundreds of thousands die annually from malaria caused by Plasmodium falciparum (Pf), with the emergence of drug-resistant parasites hindering eradication efforts. Antimicrobial peptides (AMPs) are known for their ability to disrupt pathogen membranes without targeting specific receptors, thereby reducing the chance of drug resistance. However, their effectiveness and the biophysical mechanisms by which they target the intracellular parasite remain unexplored. Here, by using native and synthetic AMPs, we discovered a selective mechanism that underlies the anti-malaria activity. Remarkably, the AMPs exclusively interact with Pf-infected Red Blood Cells (Pf-iRBCs), disrupting the cytoskeletal network and reaching the enclosed parasites with correlation to their activity. Moreover, we showed that the unique feature of reduced cholesterol content in the membrane of the infected host makes Pf-iRBCs susceptible to AMPs. Overall, this work highlights the Achilles’ heel of malaria parasite and demonstrates the power of AMPs as potential antimalarial drugs with reduced risk of resistance.
DOI: 10.5281/zenodo.14763993
title: Antimicrobial Peptides Selectively Target Malaria Parasites by a Cholesterol-Dependent Mechanism

description: Hundreds of thousands die annually from malaria caused by Plasmodium falciparum (Pf), with the emergence of drug-resistant parasites hindering eradication efforts. Antimicrobial peptides (AMPs) are known for their ability to disrupt pathogen membranes without targeting specific receptors, thereby reducing the chance of drug resistance. However, their effectiveness and the biophysical mechanisms by which they target the intracellular parasite remain unexplored. Here, by using native and synthetic AMPs, we discovered a selective mechanism that underlies the anti-malaria activity. Remarkably, the AMPs exclusively interact with Pf-infected Red Blood Cells (Pf-iRBCs), disrupting the cytoskeletal network and reaching the enclosed parasites with correlation to their activity. Moreover, we showed that the unique feature of reduced cholesterol content in the membrane of the infected host makes Pf-iRBCs susceptible to AMPs. Overall, this work highlights the Achilles’ heel of malaria parasite and demonstrates the power of AMPs as potential antimalarial drugs with reduced risk of resistance.
DOI: 10.15468/dl.dqdxmk
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cathaya argyrophylla Chun & Kuang)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 88 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003864-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.11583/dtu.28270904
title: Supporting data for "<b>Genetic memory devices to detect specialized metabolites in plant and soil microbiomes</b>"

description: In this study, we developed a catalogue of five orthogonal biosensors using genetic memory as output to allow for non-disruptive <i>in situ </i>spatiotemporal detection of biologically relevant specialized metabolites found in soil and rhizosphere environments. The biosensors were tuned and optimized in <i>E. coli</i> and shown to respond to nano- to micromolar concentrations of the five metabolites: DAPG, pyoluteorin, tetracycline, salicylic acid, and naringenin. The sensory and reporter units of four of the biosensors, except the naringenin sensor, were chromosomally integrated into the root-colonizing <i>P. putida </i>KT2440 Δall-Φ to enable long duration <i>in situ </i>experiments without requiring antibiotic selection. Lastly, we demonstrated that the four sensors, after a final optimization step, functioned in a non-sterile soil extract medium containing the diverse microbiome found in soil.The repository contains the following folders and files:ReadMe.txtPlasmid_mapsSESOM_species_table.xlsxSOIL_species_table.xlsx<br>Explanation:The "ReadMe.txt" file can be downloaded along the folder and .xlsx files for description of the study and explanation of the files.The directory "Plasmid_maps" contains plasmid maps of cloned plasmids used in the present study in .gb format.The two .xlsx files contain data of four biological replicates describing the relative species abundance in SESOM and Soil used to construct Figure 3.C.<br>
DOI: 10.11583/dtu.28270904.v1
title: Supporting data for "<b>Genetic memory devices to detect specialized metabolites in plant and soil microbiomes</b>"

description: In this study, we developed a catalogue of five orthogonal biosensors using genetic memory as output to allow for non-disruptive <i>in situ </i>spatiotemporal detection of biologically relevant specialized metabolites found in soil and rhizosphere environments. The biosensors were tuned and optimized in <i>E. coli</i> and shown to respond to nano- to micromolar concentrations of the five metabolites: DAPG, pyoluteorin, tetracycline, salicylic acid, and naringenin. The sensory and reporter units of four of the biosensors, except the naringenin sensor, were chromosomally integrated into the root-colonizing <i>P. putida </i>KT2440 Δall-Φ to enable long duration <i>in situ </i>experiments without requiring antibiotic selection. Lastly, we demonstrated that the four sensors, after a final optimization step, functioned in a non-sterile soil extract medium containing the diverse microbiome found in soil.The repository contains the following folders and files:ReadMe.txtPlasmid_mapsSESOM_species_table.xlsxSOIL_species_table.xlsx<br>Explanation:The "ReadMe.txt" file can be downloaded along the folder and .xlsx files for description of the study and explanation of the files.The directory "Plasmid_maps" contains plasmid maps of cloned plasmids used in the present study in .gb format.The two .xlsx files contain data of four biological replicates describing the relative species abundance in SESOM and Soil used to construct Figure 3.C.<br>
DOI: 10.15468/dl.4p7zhb
title: Occurrence Download

description: A dataset containing 970 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Picea schrenkiana Fisch. & C.A.Mey."
 ]
}

 The dataset includes 970 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003865-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t7k66k
title: Occurrence Download

description: A dataset containing 454 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-109.50067 36.23449,-99.76507 36.04877,-99.99505 41.13779,-108.65743 41.13779,-109.50067 36.23449))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dendroctonus ponderosae Hopkins, 1902"
 ]
}

 The dataset includes 454 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003866-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6awyhe
title: Occurrence Download

description: A dataset containing 2434 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Irvingia gabonensis (Aubry-Lecomte ex O'Rorke) Baill."
 ]
}

 The dataset includes 2434 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003868-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nc7een
title: Occurrence Download

description: A dataset containing 828 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus liaotungensis Koidz."
 ]
}

 The dataset includes 828 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003871-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.