cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17004545.v1
title: Short- versus prolonged-course antibiotic therapy for sepsis or infectious diseases in critically ill adults: a systematic review and meta-analysis

description: The 2016 International Guidelines for the Management of Sepsis and Septic Shock recommend antibiotic therapy for 7–10 days for most patients with sepsis. However, evidence on critically ill patients is limited. Thus, we conducted the first systematic review and meta-analysis comparing the effectiveness and adverse events of shorter- (≤1 week) with longer-course antibiotics in adults with critical infections including sepsis. We searched the MEDLINE, Cochrane Central Register of Controlled Trials, and Igaku Chuo Zasshi databases for randomised controlled trials (RCTs) and observational studies (OSs) from inception to 31 March 2021. We included 6 of 3,766 identified articles, incorporating data from 4 RCTs and 2 OSs (1,721 patients) in meta-analyses. Three RCTs and one OS focussed on ventilator-associated pneumonia, and one RCT and one OS investigated intra-abdominal infections. The severity score levels were similar to that of sepsis, but no study comprehensively focussing on sepsis was found. There were no significant differences in mortality at a maximum follow-up of 30 days (RR 1.08, 95%CI 0.80–1.46); 28-day mortality, clinical cure, the occurrence of new events, and the emergence of resistant organisms between the groups in the RCTs. The OSs findings were consistent. The quality of evidence was assessed as very low to moderate using the GRADE approach, with no uniform description of severity scores, sepsis, or adverse events. Shorter, fixed-duration antibiotic therapy for clinically heterogeneous sepsis or severe infections was not associated with poorer outcomes, but the overall quality of evidence was poor.
DOI: 10.6084/m9.figshare.17004545
title: Short- versus prolonged-course antibiotic therapy for sepsis or infectious diseases in critically ill adults: a systematic review and meta-analysis

description: The 2016 International Guidelines for the Management of Sepsis and Septic Shock recommend antibiotic therapy for 7–10 days for most patients with sepsis. However, evidence on critically ill patients is limited. Thus, we conducted the first systematic review and meta-analysis comparing the effectiveness and adverse events of shorter- (≤1 week) with longer-course antibiotics in adults with critical infections including sepsis. We searched the MEDLINE, Cochrane Central Register of Controlled Trials, and Igaku Chuo Zasshi databases for randomised controlled trials (RCTs) and observational studies (OSs) from inception to 31 March 2021. We included 6 of 3,766 identified articles, incorporating data from 4 RCTs and 2 OSs (1,721 patients) in meta-analyses. Three RCTs and one OS focussed on ventilator-associated pneumonia, and one RCT and one OS investigated intra-abdominal infections. The severity score levels were similar to that of sepsis, but no study comprehensively focussing on sepsis was found. There were no significant differences in mortality at a maximum follow-up of 30 days (RR 1.08, 95%CI 0.80–1.46); 28-day mortality, clinical cure, the occurrence of new events, and the emergence of resistant organisms between the groups in the RCTs. The OSs findings were consistent. The quality of evidence was assessed as very low to moderate using the GRADE approach, with no uniform description of severity scores, sepsis, or adverse events. Shorter, fixed-duration antibiotic therapy for clinically heterogeneous sepsis or severe infections was not associated with poorer outcomes, but the overall quality of evidence was poor.
DOI: 10.6084/m9.figshare.16947340.v1
title: Age-dependent effects on infectivity and susceptibility to SARS-CoV-2 infection: results from nationwide contact tracing data in Greece

description: Understanding the factors that affect the transmissibility of SARS-CoV-2 remains important to keep transmission low and maximize the health benefits of vaccination. We assessed the factors associated with the transmissibility of SARS-CoV-2 based on contact tracing data. From 1 October to 9 December 2020, 29,385 laboratory-confirmed SARS-CoV-2 cases (index cases, i.e. the first identified laboratory-confirmed cases or with the earliest symptom onset in a setting) and 64,608 traced contacts were identified in Greece. We assessed the prevalence of symptoms in cases, calculated secondary attack rates and assessed factors associated with infectivity and susceptibility to infection. There were 11,232 contacts secondarily infected (secondary attack rate: 17.4%, 95% CI:17.0–17.8). Contacts aged 0–11 and 12–17 years were less susceptible to infection than adults 65 years or older (odds ratio (OR) [95% CI]: 0.28 [0.26–0.32] and 0.44 [0.40–0.49], respectively). Index cases aged 65 years or older were more likely to infect their contacts than other adults or children/adolescents. The odds of infection [95% CI] were higher in contacts exposed within the household (1.71 [1.59–1.85] vs. other) and in cases with cough (1.17 [1.11–1.25] vs. no cough). There was an interaction between the age of the index and the age of the contact with contacts 65 years or older having a higher probability of infection when exposed to cases of similar age than to children. Our findings highlight the role of age and age mixing in infectivity and susceptibility to SARS-CoV-2 infection. Precautions are necessary for individuals 65 or older as they have higher infectivity and susceptibility in contact with their peers.
DOI: 10.5281/zenodo.5864207
title: k10stiffness

description: no
DOI: 10.6084/m9.figshare.16947340
title: Age-dependent effects on infectivity and susceptibility to SARS-CoV-2 infection: results from nationwide contact tracing data in Greece

description: Understanding the factors that affect the transmissibility of SARS-CoV-2 remains important to keep transmission low and maximize the health benefits of vaccination. We assessed the factors associated with the transmissibility of SARS-CoV-2 based on contact tracing data. From 1 October to 9 December 2020, 29,385 laboratory-confirmed SARS-CoV-2 cases (index cases, i.e. the first identified laboratory-confirmed cases or with the earliest symptom onset in a setting) and 64,608 traced contacts were identified in Greece. We assessed the prevalence of symptoms in cases, calculated secondary attack rates and assessed factors associated with infectivity and susceptibility to infection. There were 11,232 contacts secondarily infected (secondary attack rate: 17.4%, 95% CI:17.0–17.8). Contacts aged 0–11 and 12–17 years were less susceptible to infection than adults 65 years or older (odds ratio (OR) [95% CI]: 0.28 [0.26–0.32] and 0.44 [0.40–0.49], respectively). Index cases aged 65 years or older were more likely to infect their contacts than other adults or children/adolescents. The odds of infection [95% CI] were higher in contacts exposed within the household (1.71 [1.59–1.85] vs. other) and in cases with cough (1.17 [1.11–1.25] vs. no cough). There was an interaction between the age of the index and the age of the contact with contacts 65 years or older having a higher probability of infection when exposed to cases of similar age than to children. Our findings highlight the role of age and age mixing in infectivity and susceptibility to SARS-CoV-2 infection. Precautions are necessary for individuals 65 or older as they have higher infectivity and susceptibility in contact with their peers.
DOI: 10.17632/bp35mhfhf4.1
title: real vs prediction - ORIGINALS 2

description: Supplementary material for the article "Potash, Zohar, Yaar Harari, and Raziel Riemer,2022, "EFFECT OF USING REAL MOTION VERSUS PREDICTED MOTION AS INPUT FOR DIGITAL HUMAN MODELING OF BACK AND SHOULDER LOADS DURING MANUAL MATERIAL HANDLING."  published in Applied Ergonomics". 
The supplementary material consists of five folders called real vs prediction.
DOI: 10.17632/shcmwh7bz3.1
title: LDHU3_07.0140

description: metallo-peptidase - Clan ME - Family M16C
Leishmania donovani (HU3 strain)
DOI: 10.17632/b2n22kthfc.1
title: real vs prediction

description: Supplementary material for the article "Potash, Zohar, Yaar Harari, and Raziel Riemer,2022, "EFFECT OF USING REAL MOTION VERSUS PREDICTED MOTION AS INPUT FOR DIGITAL HUMAN MODELING OF BACK AND SHOULDER LOADS DURING MANUAL MATERIAL HANDLING."  published in Applied Ergonomics". 
The supplementary material consists of five folders called real vs prediction.
DOI: 10.17632/kbhg9s5sv2.1
title: LDHU3_07.0260

description: protein phosphatase 2A - regulatory subunit B
Leishmania donovani (HU3 strain)
DOI: 10.17632/6h42bmn8cv.1
title: LDHU3_07.0290

description: hypothetical protein - conserved
Leishmania donovani (HU3 strain)
DOI: 10.17632/5zpss76k2n.1
title: LDHU3_07.0350

description: acetylornithine deacetylase-like protein
Leishmania donovani (HU3 strain)
DOI: 10.17632/4dxbxkf5ct.1
title: SARS-CoV-2 vaccination induces immunological T cell memory able to cross-recognize variants from Alpha to Omicron- Tarke et al.,

description: Table S4. Related to Figure 4. List of IEDB SARS-CoV-2 T cell epitopes used for the bioinformatic analyses.
DOI: 10.17632/bmm6mhz9zy.1
title: LDHU3_07.0300

description: Fe-S cluster assembly protein DRE2
Leishmania donovani (HU3 strain)
DOI: 10.17632/bj2gyvkgvx.3
title: Dataset of manually annotated social media comments in Albanian Language for Sentiment Analysis

description: The dataset comprises comments collected from the official Facebook page of the National Institute of Public Health of Kosovo (NIPHK) for a period of 6 months, from March 12 till August 31, 2020. On March 12, the first case of COVID-19 was confirmed in Kosovo. Comments were retrieved using a tool called Comment Exporter. These comments were in Albanian language and reflect the opinions of Kosovo citizens expressed on Facebook about the Covid-19 pandemics. This dataset contains a total of 10,132 comments along with 12 attributes.
DOI: 10.17632/3cs85wd3gb.4
title: Dataset on Woody Aboveground Biomass, Disturbance Losses, and Wood Density from an African Savanna Ecosystem

description: This dataset comprises raw and processed data from two tree inventories in savanna and savanna woodland vegetation along elephant disturbance gradients in Zambezi Region, Namibia. The recorded individuals represent all age classes and damage levels (including gullivers) and were classified accordingly into six growth classes. The raw data contains allometric/dendrometric proxies (height, canopy diameters, and (where applicable) stem circumferences for stems >15cm at the base) which were recorded for n = 6,179 woody individuals in 60 plots (each 0.1 ha). Wood samples were taken to measure specific wood density (SWD) for each recorded species. 

SWD measurements and raw data have been used to estimate aboveground biomass (AGB) per individual via allometric models. Existing methodologies and workflows had to be improved to account for damages and diverse vegetation structure as shaped by disturbance impacts. In addition to standing biomass, our proposed method also delivered data on biomass losses to respective disturbance agents (elephants, fire, and others) for each individual.

The processed data comprises estimates of living AGB on individual and unit per area basis as determined with our proposed methodology, see:
Kindermann L, Dobler M, Niedeggen D, Linstädter A (2022). A new protocol for estimation of woody aboveground biomass in disturbance-prone ecosystems. Ecol. Indic. 135, 108466, https://doi.org/10.1016/j.ecolind.2021.108466.
Our proposed approach further delivered data on pre-disturbance AGB and AGB losses to major disturbance agents. For a description of biomass partitions also see detailed legend within the Data file.

Our research hypothesis was that increasing elephant densities decrease woody aboveground biomass (AGB) and increase elephant-mediated AGB losses along the disturbance gradient. Findings from the data presented here support this hypothesis. Furthermore, increasing elephant densities seem to decrease fire disturbance impacts along the same gradient. These trends can be demonstrated for two different vegetation types (savanna & savanna woodland). A comparison between the conventional standard method and our improved proposed methodology highlights the importance of suitable sampling strategies and protocols for determining biomass and carbon storage in highly disturbed dryland ecosystems. The conventional method over-estimated biomass in large but disturbed trees, while simultaneously under-estimating total biomass on a unit per area basis through omission of all smaller trees, shrubs, and highly damaged woody individuals (gullivers); see Kindermann L, Dobler M, Niedeggen D, Linstädter A (2022). A new protocol for estimation of woody aboveground biomass in disturbance-prone ecosystems. Ecol. Indic. 135, 108466, https://doi.org/10.1016/j.ecolind.2021.108466.
DOI: 10.6084/m9.figshare.17206439
title: SiteVariables&Richness_15122021.csv

description: This dataset includes farm management factors and environmental variables, as well as arthropod species richness data categorised according to habitat affilliation (crop-associated - CARich, fynbos-associated - FARich, and ubiquitous - UBRich), and layer in which arthropods were sampled (ground - GGRich, lower veg layer - CCUpRich, and upper veg layer - UpUpRich). Includes overall species richness (OverallRich).
DOI: 10.6084/m9.figshare.17206439.v1
title: SiteVariables&Richness_15122021.csv

description: This dataset includes farm management factors and environmental variables, as well as arthropod species richness data categorised according to habitat affilliation (crop-associated - CARich, fynbos-associated - FARich, and ubiquitous - UBRich), and layer in which arthropods were sampled (ground - GGRich, lower veg layer - CCUpRich, and upper veg layer - UpUpRich). Includes overall species richness (OverallRich).
DOI: 10.17632/98znxjgnsz
title: real vs prediction-after jack with location

description: Supplementary material for the article "Potash, Zohar, Yaar Harari, and Raziel Riemer,2022, "EFFECT OF USING REAL MOTION VERSUS PREDICTED MOTION AS INPUT FOR DIGITAL HUMAN MODELING OF BACK AND SHOULDER LOADS DURING MANUAL MATERIAL HANDLING."  published in Applied Ergonomics". 
The supplementary material consists of five folders called real vs prediction.
DOI: 10.17632/98znxjgnsz.1
title: real vs prediction-after jack with location

description: Supplementary material for the article "Potash, Zohar, Yaar Harari, and Raziel Riemer,2022, "EFFECT OF USING REAL MOTION VERSUS PREDICTED MOTION AS INPUT FOR DIGITAL HUMAN MODELING OF BACK AND SHOULDER LOADS DURING MANUAL MATERIAL HANDLING."  published in Applied Ergonomics". 
The supplementary material consists of five folders called real vs prediction.
DOI: 10.6084/m9.figshare.17206436
title: AbundanceMatrices_15122021.xlsx

description: The abundance matrices of indicator species in vineyard (Crop-associated), fynbos (Fynbos-associated), or both biotopes (Ubiquitous). It includes the overall abundance matrix of all arthropods sampled (Overall), and the abundances of arthropods sampled in three different layers (ground - G-G_Layer, lower veg layer - CC-Up_Layer, and upper veg layer - Up-Up_Layer).
DOI: 10.6084/m9.figshare.17206436.v1
title: AbundanceMatrices_15122021.xlsx

description: The abundance matrices of indicator species in vineyard (Crop-associated), fynbos (Fynbos-associated), or both biotopes (Ubiquitous). It includes the overall abundance matrix of all arthropods sampled (Overall), and the abundances of arthropods sampled in three different layers (ground - G-G_Layer, lower veg layer - CC-Up_Layer, and upper veg layer - Up-Up_Layer).
DOI: 10.26015/adwdocs-1895
title: Das Geistliche Personal des Domstifts Hildesheim
DOI: 10.5281/zenodo.5864927
title: Ivindomyrus opdenboschi decontaminated FSCR

description: .
DOI: 10.5281/zenodo.5864926
title: Ivindomyrus opdenboschi decontaminated FSCR

description: .
DOI: 10.15139/s3/24i4f5
title: Teaching Materials

description: Syllabi and other Teaching Materials
DOI: 10.5281/zenodo.5865003
title: Bacterial F-type ATP synthases follow a well-choreographed assembly pathway

description: The raw data provided here are referenced in the manuscript ''Bacterial F-type ATP synthases follow a well-choreographed assembly pathway'', which is in preparation for publication. The raw data files have the same name as the figures generated from the respective raw data. Content of the dataset: 1) raw spectra from LILBID measurements<br> 2) raw spectra from nESI measurements<br> 3) raw spectra from HPLC measurements<br> 4) absorbance measurements and calculations for activity assays
DOI: 10.5281/zenodo.5865002
title: Bacterial F-type ATP synthases follow a well-choreographed assembly pathway

description: The raw data provided here are referenced in the manuscript ''Bacterial F-type ATP synthases follow a well-choreographed assembly pathway'', which is in preparation for publication. The raw data files have the same name as the figures generated from the respective raw data. Content of the dataset: 1) raw spectra from LILBID measurements<br> 2) raw spectra from nESI measurements<br> 3) raw spectra from HPLC measurements<br> 4) absorbance measurements and calculations for activity assays
DOI: 10.21239/v9001j
title: Libro Rojo de Invertebrados Marinos de Colombia

description: Este libro se encuentra dividido en capítulos; del capítulo uno al tres se tratan aspectos generales respecto a la serie de libros del que éste hace parte, tales como introducción, lista de abreviaturas y metodología. La información de las especies contenidas en los capítulos cuatro y cinco se presenta a manera de ficha, bajo los siguientes títulos: nombre común; categoría nacional de amenaza; diagnosis, en la que se consignan algunos caracteres morfológicos útiles para distinguir la especie; distribución geográfica; ecología; amenazas; medidas de conservación tomadas y de conservación propuestas; algunas de las fichas tienen una sección de comentarios o notas adicionales.
DOI: 10.21239/v90c7m
title: Distribución y valoración del estado de la población silvestre de Caracol Pala Eustrombus Gigas (Gastropoda: Strombidae) en la Guajira (caribe colombiano) como guía para su manejo pesquero y conservación

description: Se evaluaron las poblaciones de gasterópodos de importancia económica en la plataforma continental de la Guajira, más exactamente desde la población de Camarones hasta el Cabo de la Vela, entre los 3 y 20 metros de profundidad, con especial énfasis en Eustrombus gigas. Adicionalmente se llevaron a cabo observaciones en 13 concheros (depósitos de conchas vacías en las playas) distribuidos en el área de estudio. La población de caracol pala E. gigas en La Guajira ha sido hasta ahora la más baja registrada en el Caribe colombiano, con solo tres individuos vivos. El caracol Strombus pugilis fue la especies más abundante. Otras especies de gran importancia comercial en la región fueron Turbinella angulata, siendo una especie con una amplia distribución espacial dado que se encontró en casi todos los ambientes además de ser la de mayor frecuencia de ocurrencia, Cassis madagascariensis y Cassis tuberosa. La abundancia de conchas botadas en las playas sugiere una explotación de E. gigas en el pasado reciente, mientras que T. angulata es la especie de caracol más explotada en La Guajira. La población de caracol pala de La Guajira no está en condiciones de ser explotada y mucho menos comercializada según los criterios dados por la CITES. Se denota la urgencia de seguir evaluando las poblaciones de gasterópodos de importancia comercial en toda la plataforma continental de La Guajira, además de realizar planes de manejo que contribuyan al adecuado uso de este recurso.
DOI: 10.21239/v90k5x
title: Cartografía y caracterización de las comunidades marinas en el Parque Nacional Natural Isla Gorgona, pacífico colombiano

description: Este proyecto se realizó con el fin de generar información básica de la composición y distribución de los ecosistemas marinos menos estudiados que se encuentran dentro del Parque Nacional Natural Gorgona (PNN Gorgona), para así suministrar otras herramientas útiles para la toma de decisiones acerca del manejo de esta área protegida.
DOI: 10.21239/v90p4k
title: Lineamientos de adaptación al cambio climático del área insular del distrito de Cartagena de Indias

description: Gracias al trabajo conjunto entre la Alcaldía de Cartagena de Indias, el Ministerio de Ambiente y Desarrollo Sostenible, el Instituto de Investigaciones Marinas y Costeras “José Benito Vives de Andréis” (Invemar), la Alianza Clima y Desarrollo (CDKN, por sus siglas en inglés) de Inglaterra y el apoyo sectorial de la Cámara de Comercio de Cartagena, se están proponiendo acciones hasta el año 2040 que promuevan el desarrollo compatible con el clima en las áreas insulares y el distrito de Cartagena de Indias. En este sentido, se han definido cinco líneas estratégicas y acciones concretas para impulsar la economía de las islas, el mejoramiento de la calidad de vida de sus habitantes, la sostenibilidad ecológica, el fortalecimiento institucional y el ordenamiento territorial, apoyado en la investigación Científica como base para la toma de decisiones y monitoreo de los fenómenos naturales desde una metodología participativa.
DOI: 10.21239/v9159m
title: Hacia la construcción de un subsistema nacional de áreas marinas protegidas en Colombia

description: Las primeras Áreas Protegidas (AP) creadas en Colombia datan de la década del 70 y conforman lo que hoy es el Sistema de Parques Nacionales Naturales (SPNN). El número de AP en Colombia ha estado en aumento desde entonces, incluyendo no solo nuevas áreas del SPNN sino áreas establecidas por instancias regionales, locales, privadas y de la sociedad civil. Las áreas protegidas representan la principal estrategia de conservación in situ de la biodiversidad, no obstante, en Colombia así como en otras regiones del mundo, muchas de estas áreas fueron creadas inicialmente por costo de oportunidad y/o decisiones o coyunturas políticas y sociales. La falta de articulación entre las acciones emprendidas para la selección y declaración y la falta de claridad en cuanto a las estrategias para su establecimiento y administración bajo diferentes categorías de manejo, han hecho evidente la necesidad de organizar y fortalecer el Sistema Nacional de Áreas Protegidas (SINAP). Con este fin se firma un Memorando de Entendimiento (MdE) que actúa como mecanismo de facilitación, permitiendo elaborar una agenda efectiva para la consolidación del SINAP, el cual está constituido no solo por las áreas protegidas de diferentes niveles, si no por los aportes o acciones de diferentes organizaciones que son protagonistas en la consolidación del sistema.
DOI: 10.21239/v91p4w
title: Lineamientos de adaptación al cambio climático para Cartagena de Indias

description: Este trabajo constituye un aporte desde la investigación científica-técnica que ha contado con el respaldo y compromiso de la administración local y la Cámara de Comercio como dinamizador del diálogo sectores y sociedad, cuyo propósito fue sentar las bases para la formulación del Plan Territorial de Adaptación al Cambio Climático de Cartagena de Indias en dos ejes específicos: I) Desarrollo de los lineamientos de adaptación al cambio climático y su socialización con los sectores económicos y actores sociales de la ciudad; II) Integración de dichos lineamientos en la planificación territorial.
DOI: 10.21239/v92015
title: Guía de las Especies Introducidas Marinas y Costeras de Colombia

description: Este libro tiene como objetivo presentar una lista ilustrada preliminar de las especies identificadas y registradas como exóticas sobre los ambientes marino-costeros de Colombia hasta el momento, o de las cuales se tiene alguna evidencia de su presencia, con el fin de aportar información sobre el estado de la biodiversidad marina colombiana, contribuyendo con información de línea base que servirá para la elaboración de planes de contingencia ante posibles amenazas