cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3642758_d1
title: MOESM2 of Identification of epitopes recognised by mucosal CD4+ T-cell populations from cattle experimentally colonised with Escherichia coli O157:H7

description: Additional file 2. Pooling strategy for EHEC O157 peptides. Details of peptide pools used to stimulate CD4+ T-cell lines from rectal lymph nodes of EHEC O157 challenged calves.
DOI: 10.6084/m9.figshare.c.3642758_d2
title: MOESM1 of Identification of epitopes recognised by mucosal CD4+ T-cell populations from cattle experimentally colonised with Escherichia coli O157:H7

description: Additional file 1. Details of EHEC O157 protein sequences for epitope mapping. Names and accession numbers of 16 EHEC O157 protein sequences used to synthesise peptides for T-cell epitope mapping.
DOI: 10.15468/dl.zpjtj2
title: Occurrence Download

description: A dataset containing 21251194 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Year 2023-2023"
 ]
}

 The dataset includes 21251194 records from 822 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033982-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xng3tw
title: Occurrence Download

description: A dataset containing 1075609 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Belgium, Germany, Netherlands)",
 "TaxonKey is one of (Ondatra zibethicus (Linnaeus, 1766), Myocastor coypus (Molina, 1782))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1075609 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033954-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3642758_d4
title: MOESM3 of Identification of epitopes recognised by mucosal CD4+ T-cell populations from cattle experimentally colonised with Escherichia coli O157:H7

description: Additional file 3. Theileria parva peptide sequences. Amino acid sequences of T. parva peptides used as negative controls for CD4+ T-cell stimulation assays.
DOI: 10.6084/m9.figshare.c.3642821_d14
title: Additional file 15: Table S7. of Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays

description: Mean, range, genotypic variance (σ 2 g ), genotype × environment interaction variance (σ 2 ge ), residual (σ 2 ɛ), and heritability (h 2 ) of the MM lines for the investigated traits. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3642821_d16
title: Additional file 10: Table S4. of Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays

description: Quantitative data for MM founders’ sequencing and expression. For sequencing, raw reads count and mean and modal coverage (in folds) are given. For expression data, raw reads numbers are given for each biological replica (B1, B2, B3). (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3642821_d20
title: Additional file 13: Table S6. of Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays

description: Phenotypic estimated values of the eight founders and 529 MM lines analyzed for days to pollen shed (PS), plant height (PH), ear height (EH), and transformed grain yield (GYrad). (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3642821_d22
title: Additional file 2: Table S2. of Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays

description: MM population breeding design, organized in 35 subfamilies. In blue and red, single and double introductions of the backup founder (CML91). (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3642821_d21
title: Additional file 1: Table S1. of Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays

description: Details of the MAGIC maize founder lines. For each line, developer, breeding group, and pedigree are given. Web links to further information and seed availability are provided. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3642827_d2
title: MOESM3 of DNA methylation signature of human fetal alcohol spectrum disorder

description: Additional file 3: Table S2. Table of genes with multiple differentially methylated probes.
DOI: 10.6084/m9.figshare.c.3642827_d3
title: MOESM4 of DNA methylation signature of human fetal alcohol spectrum disorder

description: Additional file 4: Table S3. Table of differentially methylated regions.
DOI: 10.6084/m9.figshare.c.3642827_d4
title: MOESM6 of DNA methylation signature of human fetal alcohol spectrum disorder

description: Additional file 6: Table S5. Table of imprinted genes in humans.
DOI: 10.6084/m9.figshare.c.3642827_d5
title: MOESM5 of DNA methylation signature of human fetal alcohol spectrum disorder

description: Additional file 5: Table S4. Table of pyrosequencing primers.
DOI: 10.6084/m9.figshare.c.3642827_d6
title: MOESM2 of DNA methylation signature of human fetal alcohol spectrum disorder

description: Additional file 2: Table S1. Table of differentially methylated probes.
DOI: 10.48366/r790156
title: Sentinel-2 Imaging for High-Resolution Urban and Agricultural Mapping: Insights from Sugarcane to Urban Growth

description: This collection highlights the versatile applications of Sentinel-2 satellite data in environmental and agricultural monitoring. The studies explore topics such as high-resolution urban development mapping in Delhi NCR, land cover analysis using both supervised and unsupervised learning, and crop monitoring with vegetation indices. Additionally, the research investigates the use of time series NDVI data for monitoring crop phenology and integrating Sentinel-2 with aerial images for enhanced analysis. These studies provide valuable methodologies for researchers, remote sensing professionals, and students working in urban planning, agriculture, and environmental monitoring.
DOI: 10.6084/m9.figshare.c.3642887_d1
title: Additional file 1: Table S1. of A plausible role for actin gamma smooth muscle 2 (ACTG2) in small intestinal neuroendocrine tumorigenesis

description: Patient characteristics, immunohistochemistry analysis of ACTG2 and miR-145 analysis in SI-NETs (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3642911_d1
title: Additional file 1: of Declining functional connectivity and changing hub locations in Alzheimerâ  s disease: an EEG study

description: The influence of the number of epochs. The number of epochs used for analyses influences the PLI outcomes. This supplement, including 1 figureand 1 table show that the PLI values become stable after 4 epochs of 8.192 seconds (4096 samples). (ZIP 66Â kb)
DOI: 10.6084/m9.figshare.c.3642971_d2
title: MOESM2 of Lessons learned from the microbial ecology resulting from different inoculation strategies for biogas production from waste products of the bioethanol/sugar industry

description: Additional file 2: Table S2. List of obtained OTUs for the co-digestion reactors at three different sampling points.
DOI: 10.6084/m9.figshare.c.3642980_d1
title: Additional file 1: of Ratio of apoB/LDL: a potential clinical index for vascular cognitive impairment

description: Original data setďťż. (XLS 41 kb)
DOI: 10.6084/m9.figshare.c.3643037_d3
title: Additional file 4: of RNA-seq analysis of the gonadal transcriptome during Alligator mississippiensis temperature-dependent sex determination and differentiation

description: Annotation of sexually dimorphic genes in gonad during Day 0â  12. Annotation of significant sexually dimorphic DEGs at FDRâ
DOI: 10.6084/m9.figshare.c.3643037_d1
title: Additional file 6: of RNA-seq analysis of the gonadal transcriptome during Alligator mississippiensis temperature-dependent sex determination and differentiation

description: Annotation of critical genes involved in sex determination. Annotation of candidate critical DEGs involved in sex determination during Day 0â  12. Ordered by decreasing fold change. DEGs with both significant development-dependent differential expression (Additional file 3) and sex-dependent differential expression (Additional file 4) were screened, as potential critical genes for alligator male and female cascade. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.c.3643037_d6
title: Additional file 3: of RNA-seq analysis of the gonadal transcriptome during Alligator mississippiensis temperature-dependent sex determination and differentiation

description: Annotation of development-dependent dimorphic genes in gonad during Day 0â  12. Annotation of development-dependent significantly up- and down- regulated DEGs at FDRâ
DOI: 10.6084/m9.figshare.c.3643109_d2
title: Additional file 2: of Prognostic relevance of caspase 8 -652 6N InsDel and Asp302His polymorphisms for breast cancer

description: Anonymized clinical dataset. All variables used for haplotype and diplotype construction, Kaplan-Meier curves, log-rank tests, univariate and multivariable analyses. Ages were replaced by age ranges to maintain participant confidentiality. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3643124_d2
title: Additional file 1: Table S4. of Investigating associations between biting time in the malaria vector Anopheles arabiensis Patton and single nucleotide polymorphisms in circadian clock genes: support for sub-structure among An. arabiensis in the Kilombero valley of Tanzania

description: The SNP information including flanking sequences and primer sequences used for iPLEX SNP genotyping. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3643220_d4
title: Additional file 4: Table S2. of A clone-free, single molecule map of the domestic cow (Bos taurus) genome

description: Tabulation of discordances between BtOM1.0 and Btau4.6. (XLSX 625Â kb)
DOI: 10.6084/m9.figshare.c.3643244_d1
title: Additional file 1 of The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants

description: Annotation of Floras 1. The file contains the manual annotation of Salacia erecta, Cucumeropsis mannii, Oxalis, and Basella alba. The file includes identified phenotypes and the mapping to FLOPO. It also highlights missing classes in PATO or PO. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3643244_d2
title: Additional file 2 of The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants

description: Annotation of Floras 2. The file contains the manual annotation of Salacia erecta, Andropogon chinensis, Oxalis, and Anisopappus chinensis. The file includes identified phenotypes and the mapping to FLOPO. It also highlights missing classes in PATO or PO. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3643244_d4
title: Additional file 3 of The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants

description: Missing PATO classes. A list of missing classes in the PATO ontology identified by our study. (TXT 4 kb)
DOI: 10.6084/m9.figshare.c.3643250_d1
title: Additional file 1: of Statin prescription initiation and lifestyle behaviour: a primary care cohort study

description: Online SPSS STATISTICS. (SAV 85Â kb)
DOI: 10.15468/dl.jtfg6f
title: Occurrence Download

description: A dataset containing 626 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Eucinostomus gracilis (Gill, 1862)"
 ]
}

 The dataset includes 626 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033991-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3643259_d1
title: Additional file 1: of Induction of the type I interferon response in neurological forms of Gaucher disease

description: List of the differentially-expressed transcripts. (XLSX 330Â kb)
DOI: 10.15468/dl.wy88wd
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parophidion schmidti (Woods & Kanazawa, 1951)"
 ]
}

 The dataset includes 164 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033992-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3643277_d10
title: Additional file 5: Table S4. of 
                     De novo transcriptomic assembly and profiling of Rigidoporus microporus during saprotrophic growth on rubber wood

description: All differentially up-regulated genes during saprotrophic growth of R. microporus. (XLSX 1547Â kb)
DOI: 10.15468/dl.u6gk48
title: Occurrence Download

description: A dataset containing 626 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Eucinostomus gracilis (Gill, 1862)"
 ]
}

 The dataset includes 626 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033993-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3643277_d12
title: Additional file 7: Table S6. of 
                     De novo transcriptomic assembly and profiling of Rigidoporus microporus during saprotrophic growth on rubber wood

description: List of all differentially expressed Carbohydrate-active enzymes [Glycoside Hydrolase (GH), Glycosyltransferase (GT), Carbohydrate esterase (CE) and Polysaccharide lyase (PL) families]. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.c.3643277_d13
title: Additional file 10: Table S7. of 
                     De novo transcriptomic assembly and profiling of Rigidoporus microporus during saprotrophic growth on rubber wood

description: List of all differentially expressed genes involved in Lignin degradation. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3643277_d16
title: Additional file 1: Table S1. of 
                     De novo transcriptomic assembly and profiling of Rigidoporus microporus during saprotrophic growth on rubber wood

description: Percentage of mapping of each sample. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3643280_d2
title: Additional file 1 of Do count-based differential expression methods perform poorly when genes are expressed in only one condition?

description: Table of statistics for zero-count genes. Table of zero-counts, differential statistics and S/N for the ENCODE dataset. (CSV 112 kb)
DOI: 10.15468/dl.nvfbf9
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parophidion schmidti (Woods & Kanazawa, 1951)"
 ]
}

 The dataset includes 164 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033994-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3643295_d1
title: Additional file 1: Table S1. of Genome-wide characterization of long intergenic non-coding RNAs (lincRNAs) provides new insight into viral diseases in honey bees Apis cerana and Apis mellifera

description: (A) Primers used for RT-PCR validation and (B) FPKM values of seven tissues of A. cerana used in this study. (XLS 328 kb)
DOI: 10.6084/m9.figshare.c.3643295_d3
title: Additional file 6: Table S2. of Genome-wide characterization of long intergenic non-coding RNAs (lincRNAs) provides new insight into viral diseases in honey bees Apis cerana and Apis mellifera

description: Primers used in qRT-PCR analysis. (XLS 28 kb)
DOI: 10.6084/m9.figshare.c.3643295_d2
title: Additional file 2: Dataset S1. of Genome-wide characterization of long intergenic non-coding RNAs (lincRNAs) provides new insight into viral diseases in honey bees Apis cerana and Apis mellifera

description: Annotation of A. cerana lincRNAs. (GTF 1130 kb)
DOI: 10.6084/m9.figshare.c.3643295_d4
title: Additional file 5: Dataset S3. of Genome-wide characterization of long intergenic non-coding RNAs (lincRNAs) provides new insight into viral diseases in honey bees Apis cerana and Apis mellifera

description: Sequenced PCR products of virus-specific lincRNAs. (TXT 1 kb)
DOI: 10.6084/m9.figshare.c.3643295_d6
title: Additional file 3: Dataset S2. of Genome-wide characterization of long intergenic non-coding RNAs (lincRNAs) provides new insight into viral diseases in honey bees Apis cerana and Apis mellifera

description: Annotation of A. mellifera lincRNAs. (GTF 403 kb)
DOI: 10.15468/dl.gnd67q
title: Occurrence Download

description: A dataset containing 114905 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles gambiae Giles, 1900"
 ]
}

 The dataset includes 114905 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033989-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/8f56gbr6tk.1
title: Optical analyses of lossy near-field thermophotonic devices with planar and scattering mirrors

description: Data supporting the plots presented in the publication: Optical analyses of lossy near-field thermophotonic devices with planar and scattering mirrors'. Authors: J. van Gastel, P. Kivisaari, J. Oksanen, E. Vlieg and J.J. Schermer. 

Published in Solar energy materials and solar cells, accepted on 25/11/2024.
DOI: 10.15468/dl.7z6geb
title: Occurrence Download

description: A dataset containing 95221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "Country is one of (Spain, France, Portugal)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Capra pyrenaica Schinz, 1838",
 "Year 1981-2024"
 ]
}

 The dataset includes 95221 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033990-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s7bubw
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parophidion schmidti (Woods & Kanazawa, 1951)"
 ]
}

 The dataset includes 164 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033995-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3643340_d1
title: Additional file 1 of Transcriptome profiling of bovine inner cell mass and trophectoderm derived from in vivo generated blastocysts

description: Table S1. Embryo recovery data. Detail information of in vivo embryo production and ICM/TE immunosurgery. Table S2. Differentially regulated gens. List of genes differentially expressed between ICM and TE of in vivo-derived blastocysts (FDR 2, P ≤ 0.01, FC ≥2). Table S3. ICM/TE predominant gene list. Breakdown of genes exclusively expressed in ICM and TE after filtering data against background genes. Table S4. Epigenetic landscape of ICM transcriptome. Transcriptional profile of epigenetic genes expressed in ICM compared to TE in bovine. Table S5. Effect of in vitro culture on transcriptional profile of ICM and TE. Comparison between transcriptome data of bovine ICM and TE obtained from in vivo (This study) and in vitro (Ozawa et al. [19], and Nagomoto et al. [20]) studies. Table S6. Comparative transcriptional profile of pluripotency related genes between human, mouse and bovine. Expression profile of genes with similar identity between a human [16] study and a mouse study [14] were compared with this study. Table S7. RT-qPCR primers. Sequences (5’–3’) of reverse transcription qRT-PCR-specific primers of candidate genes expressed in bovine embryos. (XLSX 1729 kb)
DOI: 10.6084/m9.figshare.c.3643397_d1
title: Additional file 1: of Genome-wide association between single nucleotide polymorphisms with beef fatty acid profile in Nellore cattle using the single step procedure

description: Manhattan plot of the genome-wide association study for fatty acids in Nellore. The X-axis represents the chromosomes, and the Y-axis shows the proportion of genetic variance explained by windows of 10 adjacent SNPs in the following 18 fatty acids: arachidonic, CLA-cis, CLA-trans, docosahexaenoic, eicosatrienoic,myristoleic, MUFA, PUFA, myristic, n6:n3, oleic, omega-3, palmitic, stearic, palmitoleic and PUFA:SFA ratio in Nellore. (ZIP 1395Â kb)
DOI: 10.15468/dl.c44g78
title: Occurrence Download

description: A dataset containing 175 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles grabhamii Theobald, 1901"
 ]
}

 The dataset includes 175 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033996-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10200033
title: Automated bio-AFM generation of large mechanome data set and their analysis by machine learning to classify prostatic cell lines_Training base 100 PC3-GFP
DOI: 10.5281/zenodo.10200034
title: Automated bio-AFM generation of large mechanome data set and their analysis by machine learning to classify prostatic cell lines_Training base 100 PC3-GFP
DOI: 10.6084/m9.figshare.c.3643415_d1
title: Additional file 9: Table S4 of Barley landraces are characterized by geographically heterogeneous genomic origins

description: Genome-wide proportion of ancestry among each landrace population. Genome-wide average proportions of genetic ancestry in barley landrace populations for all regions that have a probability of assignment &gt;95 %.
DOI: 10.6084/m9.figshare.c.3643415_d2
title: Additional file 13: Table S6. of Barley landraces are characterized by geographically heterogeneous genomic origins

description: Genome-wide ancestry as a function of distance from wild populations. Proportions of ancestry for individual landraces, and the great circle distance between each individual and the closest accession from each wild population.
DOI: 10.6084/m9.figshare.c.3643421_d7
title: Additional file 5: Table S2. of Recombination-driven generation of the largest pathogen repository of antigen variants in the protozoan Trypanosoma cruzi

description: Proteomic Confirmation of TcTS. (a) Summary of proteomic analysis. The “Min” value represents the minimum number of proteins (and their peptides) that could account for all identified peptides (see “TOP PROTEIN” in b and c), while the “Max” value is the total number of proteins (and their peptides) that contain the identified peptides (e.g. isoforms and related proteins). (b) List of all identified TcTS proteins. (c) List of identified newly identified TcTS proteins. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.c.3643421_d8
title: Additional file 16: of Recombination-driven generation of the largest pathogen repository of antigen variants in the protozoan Trypanosoma cruzi

description: Motif and MEME scripts. (RAR 42 kb)