cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25504/fairsharing.an9ct0
title: FAIRsharing record for: BioMedBridges Diabetes Ontology
title: DIAB

description: This FAIRsharing record describes:  The BioMedBridges diabetes-specific ontology enables users to integrate data resources related to prediabetes, diabetes, and late consequences/complications of diabetes. Data integration between mouse disease models and human studies is hindered by fundamental differences in the ontologies used by the respective communities to describe the same phenotypes. Common standards and ontologies to bridge the phenotype gap between mouse and human open extensive mouse phenotype data to clinical researchers. 

To develop a comprehensive set of terms to describe Type 2 diabetes and obesity phenotypes in mouse and human, Type 2 Diabetes-related phenotypes were mined from the literature for use as new phenotype terms. Expert clinicians/diabetologists then curated the mined terms and categorised them by temporal disease stages. The ontology was then used for the annotation of mouse and human datasets with specific terminology representing Type 2 Diabetes progression, which will ultimately support translational research.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.bke5k
title: FAIRsharing record for: Rheumatoid Arthritis ontology
title: RAO

description: This FAIRsharing record describes:  A controlled vocabulary of RA-relevant information. Currently, only treatment information is available.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.qurof6
title: FAIRsharing record for: FAIR Maturity Indicator Gen2-MI-I1A
title: null

description: This FAIRsharing record describes:  The FAIR Maturity Indicator Gen2-MI-I1A measures the use of a formal, accessible, shared, and broadly applicable language for knowledge representation. The unambiguous communication of knowledge and meaning (what symbols are, and how they relate to one another) necessitates the use of languages that are capable of representing these concepts in a machine-readable manner. There is debate in the community about what languages would be considered "knowledge representation languages", as such this Maturity Indicator is broken into two sub-MIs (Gen2-FM-I1A and Gen2-FM-I1B). This MI takes a loose definition, that any kind of structured information is sufficient.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.jcj3gv
title: FAIRsharing record for: Monogenean Ontology
title: MONO

description: This FAIRsharing record describes:  The Monogenean Ontology is an ontology describing the anatomy of Monogeneans, small worms that parasitise aquatic animals such as fish and frogs.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.p51kqa
title: FAIRsharing record for: Vertebrate Skeletal Anatomy Ontology
title: VSAO

description: This FAIRsharing record describes:  VSAO is an anatomy ontology covering the vertebrate skeletal system. VSAO integrates terms for skeletal cells, tissues, biological processes, organs (skeletal elements such as bones and cartilages), and subdivisions of the skeletal system. Note that VSAO is a deprecated ontology and has been superceded by Uberon.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.504c6c
title: FAIRsharing record for: Radiomics Ontology
title: RO

description: This FAIRsharing record describes:  The Radiomics Ontology (RO) aims to cover the radiomics feature domain as well as the full spectrum of radiomics computational details. Radiomics is a research area concerned with the extraction of large amount of features from radiographic medical images. The current version of the RO includes all the possible steps that should be documented when performing a radiomic study. RO shares IRIs with the IBSI reference manual.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.695abb
title: FAIRsharing record for: Connectivity Table file format
title: CT file format

description: This FAIRsharing record describes:  A CT (Connectivity Table) file contains secondary structure information for a RNA sequence.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.llxjwx
title: FAIRsharing record for: FAIR Maturity Indicator Gen2-MI-I3
title: null

description: This FAIRsharing record describes:  The FAIR Maturity Indicator Gen2-MI-I3 measures whether the linked data metadata contain links that are not from the same source (domain/host). Data silos thwart interoperability. Thus, we should reasonably expect that some of the references/relations point outwards to other resources, owned by third-parties; this is one of the requirements for 5 star linked data.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.46rwe6
title: FAIRsharing record for: Clinical Signs and Symptoms Ontology
title: CSSO

description: This FAIRsharing record describes:  An ontology for describing clinical signs and symptoms.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.9y8f0n
title: FAIRsharing record for: The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology
title: DIDEO

description: This FAIRsharing record describes:  A domain ontology for potential drug-drug interactions (PDDIs) that covers the material entities and processes in the domain of discourse for PDDI evidence and knowledge claims. The representation enables the integration of drug interaction mechanisms, effects, risk factors, severity, and management options with the chemical and pharmacological properties (e.g., chemical structure, function, pharmacokinetic and pharmacodynamic properties) of the interacting drugs. It also has a rich and detailed set evidence entities related to pharmacology.  See below for publications about DIDEO. A description of the goals of the project can be found in the following workshop paper located in the docs/DIDEO-discussion-ICBO-Brochhausen-2014.pdf: Brochhausen, M., Schneider, J., Malone, D., Empey, PE., Hogan WR., and Boyce, RD. Towards a foundational representation of potential drug-drug interaction knowledge. The 1st International Drug-Drug Interaction Knowledge Representation Workshop (DIKR 2014). Collocated with the 2014 International Conference on Biomedical Ontology (ICBO 2014). October 6th, Houston, Texas. United States.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.knrb06
title: FAIRsharing record for: Nexus XML
title: NeXML

description: This FAIRsharing record describes:  To facilitate interoperability in evolutionary comparative analysis, we present NeXML, an XML standard (inspired by the current standard, NEXUS) that supports exchange of richly annotated comparative data. NeXML defines syntax for operational taxonomic units, character-state matrices, and phylogenetic trees and networks. Documents can be validated unambiguously. Importantly, any data element can be annotated, to an arbitrary degree of richness, using a system that is both flexible and rigorous. We describe how the use of NeXML by the TreeBASE and Phenoscape projects satisfies user needs that cannot be satisfied with other available file formats
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.rcuuvt
title: FAIRsharing record for: FAIR Maturity Indicator Gen2-MI-I2B
title: null

description: This FAIRsharing record describes:  The FAIR Maturity Indicator Gen2-MI-I2B measures if the (meta)data uses vocabularies that are, themselves, FAIR. In this strict Maturity Indicator, we test if the vocabulary terms resolve to machine-readable linked data. A second Maturity Indicator (Gen2-FM-I2A) is looser than this MI.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.1dd23d
title: FAIRsharing record for: Multiple Alignment using Fast Fourier Transform
title: MAFFT

description: This FAIRsharing record describes:  MAFFT (Multiple Alignment using Fast Fourier Transform) is a high speed multiple sequence alignment program which implements the Fast Fourier Transform (FFT) to optimise protein alignments based on the physical properties of the amino acids. The program uses progressive alignment and iterative alignment. MAFFT is useful for hard-to-align sequences such as those containing large gaps (e.g., rRNA sequences containing variable loop regions).
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.8sz2fa
title: FAIRsharing record for: TDWG Specimen LSID Ontology
title: TDWGSPEC

description: This FAIRsharing record describes:  The TDWG Specimen LSID Ontology was designed to represent records of specimens, and contain information specific to the specimen. Biodiversity Information Standards (TDWG) is an international not-for-profit group that develops standards and protocols for sharing biodiversity data. They have a detailed collection of vocabularies and ontologies for studies of biological organisms.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.21d998
title: FAIRsharing record for: European Data Format
title: EDF

description: This FAIRsharing record describes:  The European Data Format (EDF) is a simple and flexible format for exchange and storage of multichannel biological and physical signals. More information http://www.edfplus.info
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.zfdyef
title: FAIRsharing record for: biotracks
title: biotracks

description: This FAIRsharing record describes:  Biotracks provides a standard format for cell migration tracking files and a series of converters from popular tracking sofware packages to the biotracks format, which is a specialization of the Frictionless Tabular Data Package .
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.7rmkwr
title: FAIRsharing record for: Emergency care ontology
title: ONTOLURGENCES

description: This FAIRsharing record describes:  OntolUrgences is a termino-ontological resource developed to index and retrieve information in electronic Emergency Medical Record.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.cakne1
title: FAIRsharing record for: NIDM-Results
title: NIDM-Results

description: This FAIRsharing record describes:  NIDM-Results is a data model that enable sharing neuroimaging results using a common descriptive standard across neuroimaging software. NIDM-Results focuses on mass-univariate studies and is mostly targeted at fMRI but is also suitable for anatomical MRI (with Voxel-Based Morphometry), and Positron Emission Tomography (PET).  NIDM-Results packs provide a lightweight solution to share maps generated by neuroimaging studies along with their metadata. Export to NIDM-Results is natively implemented in SPM, NeuroVault and CBRAIN and a Python library is ready for integration in FSL. NeuroVault additionally can import NIDM-Results packs.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.r41qhx
title: FAIRsharing record for: Unified phenotype ontology
title: UPHENO

description: This FAIRsharing record describes:  The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology. Version 2 is the active release of the ontology, while version 1 should be considered deprecated. 
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.e729c4
title: FAIRsharing record for: RNA Markup Language
title: RNAML

description: This FAIRsharing record describes:  RNAML syntax was designed to facilitate the interoperation of multiple RNA informatics programs and to exchange basic RNA molecular information.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.rd1j6t
title: FAIRsharing record for: Brain Imaging Data Structure
title: BIDS

description: This FAIRsharing record describes:  BIDS is a simple, easy to use standard for organizing and describing outputs of neuroimaging experiments.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.rbpqg
title: FAIRsharing record for: PGxO
title: PGXO

description: This FAIRsharing record describes:  PGxO is a lightweight and simple Pharmacogenomic Ontology to reconcile and trace knowledge in pharmacogenomics (PGx).
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.w6zgvd
title: FAIRsharing record for: Universal Worker Service Pattern
title: UWS

description: This FAIRsharing record describes:  The Universal Worker Service (UWS) pattern defines how to manage asynchronous execution of jobs on a service. Any application of the pattern defines a family of related services with a common service contract. Possible uses of the pattern are also described.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.ypfgeq
title: FAIRsharing record for: Translational Medicine Ontology
title: TMO

description: This FAIRsharing record describes:  This project focuses on the development of a high level patient-centric ontology for the pharmaceutical industry. The ontology should enable silos in discovery research, hypothesis management, experimental studies, compounds, formulation, drug development, market size, competitive data, population data, etc. to be brought together. This would enable scientists to answer new questions, and to answer existing scientific questions more quickly. This will help pharmaceutical companies to model patient-centric information, which is essential for the tailoring of drugs, and for early detection of compounds that may have sub-optimal safety profiles. The ontology should link to existing publicly available domain ontologies.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.4vr0ys
title: FAIRsharing record for: Fission Yeast Phenotype Ontology
title: FYPO

description: This FAIRsharing record describes:  FYPO is being developed to support the comprehensive and detailed representation of phenotypes in PomBase, the online fission yeast resource (www.pombase.org). Its scope is similar to that of the Ascomycete Phenotype Ontology (APO), but FYPO includes more detailed pre-composed terms as well as computable definitions.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.f928f1
title: FAIRsharing record for: Archival Resource Key Identifier
title: ARK Identifier

description: This FAIRsharing record describes:  Archival Resource Keys (ARKs) serve as persistent identifiers, or stable, trusted references for information objects. Among other things, they aim to be web addresses (URLs) that don’t return 404 Page Not Found errors. The ARK Alliance is an open global community supporting the ARK infrastructure on behalf of research and scholarship. End users, especially researchers, rely on ARKs for long term access to the global scientific and cultural record. Since 2001 some 8.2 billion ARKs have been created by over 1000 organizations — libraries, data centers, archives, museums, publishers, government agencies, and vendors. They identify anything digital, physical, or abstract. ARKs are open, mainstream, non-paywalled, decentralized persistent identifiers that can be created by an organization as soon as it is registered with a NAAN (Name Assigning Authority Number). Once registered, an ARK organization can create unlimited numbers of ARKs and publicize them via the n2t.net global resolver or via their own local resolver.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.jj4n9f
title: FAIRsharing record for: Solanaceae Phenotype Ontology
title: SPTO

description: This FAIRsharing record describes:  Solanaceae crop phenotypes and traits, developed in collaboration with the research community, especially for breeder traits of agronomic importance.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.qdcgfc
title: FAIRsharing record for: Ontology of Pneumology
title: OntoPneumo

description: This FAIRsharing record describes:  OntoPneumo is an ontology for describing pneumology (french version). Their goal is to use natural language within the ontology to express the meaning of each concept using differential principles inherited from Differential Semantics theory. OntoPneumo is used in software for pneumologists that represents medical knowledge to describe the medical diagnoses in the form of graphs and to propose the proper French DRG (Diagnosis Related Group) code.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.