cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10161143
title: domino2: data for a reproducible example

description: This repository hosts example data for reproducible analysis of intra- and intercellular signaling in single cell RNA sequencing (scRNAseq) data based on transcription factor (TF) activation. We demonstrate analysis using domino2 on the 10X Genomics Peripheral Blood Mononuclear Cells (PBMC) data set of 2,700 cells PBMC3K. scRNA-seq data is preprocessed following the Satija Lab's Guided Clustering Tutorial. Quantification of TF activation is conducted using pySCENIC. For more details on how this analysis is conducted, please refer to the vignettes in the domino2 package.
DOI: 10.15468/dl.z7dbaa
title: Occurrence Download

description: A dataset containing 215 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carex albolutescens Schwein.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 215 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0174727-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10850479
title: dominoSignal: data for a reproducible example

description: This repository hosts example data for reproducible analysis of intra- and intercellular signaling in single cell RNA sequencing (scRNAseq) data based on transcription factor (TF) activation. We demonstrate analysis using dominoSignal on the 10X Genomics Peripheral Blood Mononuclear Cells (PBMC) data set of 2,700 cells PBMC3K. scRNA-seq data is preprocessed following the Satija Lab's Guided Clustering Tutorial. Quantification of TF activation is conducted using pySCENIC. For more details on how this analysis is conducted, please refer to the vignettes in the dominoSignal package.
DOI: 10.15468/dl.5u3nv4
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Brookesia thieli Brygoo & Domergue, 1969"
 ]
}

 The dataset includes 72 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081556-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10124866
title: domino2: data for a reproducible example

description: This repository hosts example data for reproducible analysis of intra- and intercellular signaling in single cell RNA sequencing (scRNAseq) data based on transcription factor (TF) activation. We demonstrate analysis using domino2 on the 10X Genomics Peripheral Blood Mononuclear Cells (PBMC) data set of 2,700 cells PBMC3K. scRNA-seq data is preprocessed following the Satija Lab's Guided Clustering Tutorial. Quantification of TF activation is conducted using pySCENIC. For more details on how this analysis is conducted, please refer to the vignettes in the domino2 package.
DOI: 10.15468/dl.ner4te
title: Occurrence Download

description: A dataset containing 384821 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Vulpes vulpes (Linnaeus, 1758)"
 ]
}

 The dataset includes 384821 records from 800 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150046-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10161563
title: domino2: data for a reproducible example

description: This repository hosts example data for reproducible analysis of intra- and intercellular signaling in single cell RNA sequencing (scRNAseq) data based on transcription factor (TF) activation. We demonstrate analysis using domino2 on the 10X Genomics Peripheral Blood Mononuclear Cells (PBMC) data set of 2,700 cells PBMC3K. scRNA-seq data is preprocessed following the Satija Lab's Guided Clustering Tutorial. Quantification of TF activation is conducted using pySCENIC. For more details on how this analysis is conducted, please refer to the vignettes in the domino2 package.
DOI: 10.15468/dl.snihz7
title: Occurrence Download

description: A dataset containing 12322919 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-68.34728 -64.55742,-24.02579 -35.19491,-16.40392 -12.04453,-43.22109 27.47813,-83.87579 39.61758,-117.18633 31.99219,-128.47852 7.43203,-114.64804 -36.04219,-84.72304 -59.75506,-68.34728 -64.55742))",
 "HasCoordinate is true",
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 12322919 records from 1226 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020977-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4j989p
title: Occurrence Download

description: A dataset containing 772 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sceloporus jalapae Günther, 1890"
 ]
}

 The dataset includes 772 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0277145-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r6qf2n
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cyclodictyon marginatum (Hook. & Wilson) Kuntze"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0414250-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ed5ecm
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Sea Turtles of Nicaragua's Pacific Coast (aggregated per 1-degree cell)"
 ]
}

 The dataset includes 29 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130092-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.czbut7
title: Occurrence Download

description: A dataset containing 118 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cattleya Lindl.",
 "Year 2011-2022"
 ]
}

 The dataset includes 118 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217868-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h4d93q
title: Occurrence Download

description: A dataset containing 2893 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Turdus chrysolaus Temminck, 1832",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2893 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0413125-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2w5fs6
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mandrillus sphinx (Linnaeus, 1758)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 57 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217876-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d3s97f
title: Occurrence Download

description: A dataset containing 2024 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "Country is one of (United States of America, United States Minor Outlying Islands, American Samoa, Micronesia (Federated States of), Guam, Marshall Islands, Northern Mariana Islands, Puerto Rico, Palau, Virgin Islands (U.S.))",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Lythrurus fasciolaris (Gilbert, 1891))"
 ]
}

 The dataset includes 2024 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130083-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dnnd9a
title: Occurrence Download

description: A dataset containing 4552 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cunninghamia lanceolata (Lamb.) Hook."
 ]
}

 The dataset includes 4552 records from 286 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0199071-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.97w6h3
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Afrocanthium keniense (Bullock) Lantz",
 "Year 1000-2022"
 ]
}

 The dataset includes 37 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0413124-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cvpstt
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centaurea nobilis (E.Groves) Brullo"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130093-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w887qd
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Metapenaeopsis hilarula (De Man, 1911)"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0422068-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ngsw46
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-78.36182 -47.63916,-76.0669 -53.93799,-67.66113 -57.48535,-56.48682 -53.10791,-47.75208 -26.48499,-47.88117 -25.11597,-49.37653 -24.21051,-49.5221 -22.99378,-51.0846 -22.70081,-53.39173 -22.40784,-54.27063 -23.86047,-55.11963 -23.66455,-55.44068 -22.03735,-57.78443 -21.9397,-57.61353 -20.81665,-58.04932 -19.51416,-60.1001 -18.78174,-61.90003 -19.50256,-62.81372 -21.30493,-64.49829 -22.18384,-66.52466 -21.67114,-67.35474 -22.55005,-67.88147 -21.67542,-67.96692 -19.99085,-69.11255 -17.52075,-69.91455 -17.41455,-70.45166 -18.39111,-78.36182 -47.63916))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Licaria armeniaca (Nees) Kosterm."
 ]
}

 The dataset includes 43 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083460-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cwkzm6
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centaurea nivea (Bornm.) Wagenitz"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130090-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kb4z3a
title: Occurrence Download

description: A dataset containing 207 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cinnamomum mercadoi S.Vidal"
 ]
}

 The dataset includes 207 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217887-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bqn8vs
title: Occurrence Download

description: A dataset containing 6505 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Belgium",
 "Country is Bulgaria",
 "Country is Croatia",
 "Country is Cyprus",
 "Country is Denmark",
 "Country is Estonia",
 "Country is Finland",
 "Country is France",
 "Country is Germany",
 "Country is Greece",
 "Country is Hungary",
 "Country is Ireland",
 "Country is Italy",
 "Country is Latvia",
 "Country is Lithuania",
 "Country is Luxembourg",
 "Country is Malta",
 "Country is Netherlands",
 "Country is Poland",
 "Country is Portugal",
 "Country is Romania",
 "Country is Slovakia",
 "Country is Slovenia",
 "Country is Spain",
 "Country is Sweden",
 "Country is Austria"
 ]
 },
 "TaxonKey is Lathyrus L.",
 "Year 2021-2021"
 ]
}

 The dataset includes 6505 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082221-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5raffy
title: Occurrence Download

description: A dataset containing 156265 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Bat Banding"
 ]
}

 The dataset includes 156265 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217882-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.78hjeg
title: Occurrence Download

description: A dataset containing 1300 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lophophora williamsii (Lem. ex Salm-Dyck) J.M.Coult."
 ]
}

 The dataset includes 1300 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130102-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yjt2fa
title: Occurrence Download

description: A dataset containing 5386 species occurrences available in GBIF matching the query:
{
 "and" : [
 "MediaType is Image",
 "TaxonKey is Pteris vittata L."
 ]
}

 The dataset includes 5386 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015674-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.22cren
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "TaxonKey is Duabanga moluccana Blume"
 ]
}

 The dataset includes 79 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217890-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.46efxy
title: Occurrence Download

description: A dataset containing 138044 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Regulus regulus (Linnaeus, 1758)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2022",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 138044 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130074-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6aowdv
title: Occurrence Download

description: A dataset containing 487 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bursera linanoe (La Llave) Rzed., Calderón & Medina"
 ]
}

 The dataset includes 487 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028062-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zuzwan
title: Occurrence Download

description: A dataset containing 962 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Macaca fuscata (Blyth, 1875)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 962 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217889-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wyptjt
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centaurea occasus F.Fern.Casas"
 ]
}

 The dataset includes 76 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130109-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qdr9ur
title: Occurrence Download

description: A dataset containing 458 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Epidendrum stamfordianum Bateman"
 ]
}

 The dataset includes 458 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069473-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sdzddt
title: Occurrence Download

description: A dataset containing 128376 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mus musculus Linnaeus, 1758",
 "HasCoordinate is true"
 ]
}

 The dataset includes 128376 records from 481 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217877-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jwaz9x
title: Occurrence Download

description: A dataset containing 3479 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Finland",
 "Month is one of (May, June)",
 "TaxonKey is Gallinago gallinago (Linnaeus, 1758)",
 "Year 2019-2022"
 ]
}

 The dataset includes 3479 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130121-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nzzzt4
title: Occurrence Download

description: A dataset containing 4241 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Occurrence evidence"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Vincetoxicum nigrum (L.) Moench"
 ]
}

 The dataset includes 4241 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0366029-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ybkqt
title: Occurrence Download

description: A dataset containing 1230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((72 25,105 25,105 40,72 40,72 25))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tetraogallus tibetanus Gould, 1854"
 ]
}

 The dataset includes 1230 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0423265-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gpbz5s
title: Occurrence Download

description: A dataset containing 956 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyclocarya paliurus (Batalin) Iljinsk."
 ]
}

 The dataset includes 956 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0199072-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4w86sn
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centaurea ochrocephala Wagenitz"
 ]
}

 The dataset includes 16 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130111-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.akmgff
title: Occurrence Download

description: A dataset containing 11503 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Blythipicus Bonaparte, 1854"
 ]
}

 The dataset includes 11503 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082227-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xcf8c8
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptobrachella ventripunctata (Fei, Ye & Li, 1990)"
 ]
}

 The dataset includes 122 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217893-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qejxf9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trigonella laxissima Vassilcz."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021431-230810091245214/datasets/export for details.