cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7758429
title: Mg and Fe isotopes and other geochemical data for Gangdese arc mafic plutonic rocks and trench sediments

description: These files content unpublished Mg and Fe isotopes and other geochemical data for the Gangdese arc mafic plutonic rocks and trench sediments.
DOI: 10.5281/zenodo.8334775
title: Petrology, Age, and Rift Origin of Ultramafic Lamprophyres (Aillikites) at Mount Webb, a New Alkaline Province in Central Australia

description: APPENDIX_A: LA-ICP-MS and EPMA analyses for pyrope garnet and Cr diopside used in study.
DOI: 10.6084/m9.figshare.10024739.v2
title: In-tube condensation data of R404A, R448A, and R452A in a horizontal 4.7 mm ID tube

description: The attached data was collected at Oregon State University in the Thermal Energy Systems and Transport (TEST) Laboratory during flow condensation experiments for refrigerants R404, R448A and R452A. The experiments were conducted in a horizontal circular copper tube of 4.7mm internal diameter. Water, flowing in the annulus, was used as the coolant. The local condensation heat transfer coefficients and the associated qualities for each refrigerant are reported at varying mass fluxes (100 to 800 kg m^(-2) s^(-1)) and saturation temperatures of 40, 50 and 60 degrees Celsius. <br>The test section was divided into 7 segments. Exact length of each section is recorded below and attached figure shows visual representation of a segment. Water inlet and outlet temperature and the copper tube surface temperature are measured in each segment. The surface temperatures were measured at the center of each section using self-adhesive surface thermocouples. Using these measurements, local heat transfer coefficients and thermodynamic qualities were evaluated for each segment. This was accomplished by performing energy balances on the coolant side to determine the heat duties transferred in each section. <br>Summaries of the average measured values and the calculated variables are presented in the remaining sheets of this document. For more details regarding the experiments, results, and conclusions, please see cited references.
DOI: 10.6084/m9.figshare.12235454.v2
title: In-tube condensation data of R454C in a horizontal 4.7 mm ID tube

description: The attached data was collected at Oregon State University in the Thermal Energy Systems and Transport (TEST) Laboratory during flow condensation experiments for refrigerants R454C. The experiments were conducted in a horizontal circular copper tube of 4.7 mm internal diameter. Water, flowing in the annulus, was used as the coolant. The local condensation heat transfer coefficients and the associated qualities for each refrigerant are reported at varying mass fluxes (100 to 500 kg m^(-2) s^(-1)) and saturation temperatures of 40, 50 and 60 degrees Celsius.<br>The test section was divided into 7 segments. Exact length of each section is recorded below and attached figure shows visual representation of a segment. Water inlet and outlet temperature and the copper tube surface temperature are measured in each segment. The surface temperatures were measured at the center of each section using self-adhesive surface thermocouples. Using these measurements, local heat transfer coefficients and thermodynamic qualities were evaluated for each segment. This was accomplished by performing energy balances on the coolant side to determine the heat duties transferred in each section.<br>Summaries of the average measured values and the calculated variables are presented in the remaining sheets of this document. For more details regarding the experiments, results, and conclusions, please see cited references.
DOI: 10.18709/perscido.2023.04.ds391
title: Snow status (wet/dry) in Antarctica from AMSR-E and AMSR2 passive microwave radiometers 2002 – 2023

description: The dataset provides daily binary status (wet/dry) of the snowpack for each pixel at 12.5 km resolution in Antarctica over more than 20 years. This status is retrieved from passive microwave observations at 19 GHz and horizontal polarisation, using an algorithm developed by Torinesi et al. 2013 and Picard and Fily, 2006. The dataset merge the two timeseries from AMSR-E and AMSR2 sensors. The effective resolution of about ~25 km. There is a gap in 2011/2012 between AMSR-E and AMSR2. The ascending (afternoon) and descending (midnight) passes are provided separately.
DOI: 10.5281/zenodo.8015609
title: Dataset for "Disproportionation of iron in almandine-pyrope garnet from 25 to 65 GPa"

description: This dataset includes the pressure, lattice parameter, and volume data for the bridgmanite discussed in the associated manuscript, "Disproportionation of iron in almandine-pyrope garnet from 25 to 65 GPa."
DOI: 10.5281/zenodo.8257073
title: Transient Injection of Flow: How Torn and Bent Subducting Slabs Induce Unusual Mantle Circulation Patterns near a flat slab

description: This repository provides the input (.prm) files for the paper "Transient Injection of Flow: How Torn and Bent Slabs Induce Unusual Mantle Circulation Patterns near a flat slab".
DOI: 10.5281/zenodo.8279300
title: Age and geochemistry of High Arctic Large Igneous Province tholeiitic magmatism in NW Axel Heiberg Island, Canada

description: Original data presented in Excel format to accompany the paper "Age and geochemistry of High Arctic Large Igneous Province tholeiitic magmatism in NW Axel Heiberg Island, Canada" by Deegan et al. (2023), published in <em>Geochemistry, Geophysics, Geosystems </em>in the special collection on Arctic magmatism ("Through the Arctic Lens: Progress in Understanding the Arctic Ocean, Margins and Landmasses"). The file contains major and trace element data, Sr-Nd-Pb isotope data, and Ar-Ar dates for a suite of mafic rocks (lavas, dikes, and sills) from Bukken Fiord, NW Axel Heiberg Island, Canadian Arctic Islands.
DOI: 10.5281/zenodo.8307867
title: Open code for the Pn velocity and anisotropy inversion

description: The open code files for the Pn velocity and anisotropy inversion.
DOI: 10.5281/zenodo.8403272
title: Datasets and R code associated with: Acute Health Effects of Wildfire Smoke Exposure During a Compound Event: A Case-Crossover Study of the 2016 Great Smoky Mountain Wildfires

description: The attached code and csv files accompany the manuscript titled: Acute Health Effects of Wildfire Smoke Exposure During a Compound Event: A Case-Crossover Study of the 2016 Great Smoky Mountain Wildfires by Duncan et al. accepted for publication in the journal GeoHealth in September 2023. Project wildfire data.csv contains a subset wildfire data obtained from: Short, Karen C. 2022. Spatial wildfire occurrence data for the United States, 1992-2020 [FPA_FOD_20221014]. 6th Edition. Fort Collins, CO: Forest Service Research Data Archive. https://doi.org/10.2737/RDS-2013-0009.6 Modeled PM2.5 data_clean.csv includes modeled PM<sub>2.5</sub> concentrations used to make Figure 2. Model results can be obtained from EPA's Fused Air Quality Surfaces Using Downscaling Tool. plot_Modeled.R contains the R code to generate this figure. ORs all Counties.csv contains the odds ratios, confidence intervals, and p-values used to make Figures 3, 4, and 5.PM2.5 35ug-m3 ORs.csv contains the odds ratios, confidence intervals, and p-values used to make Figure S1. Wildfire_Forest.R contains the R code to generate these figures.
DOI: 10.14468/43ys-0z67
title: Results of scalability and validation analysis of MHD solvers in OpenFOAM (mhdFoam and epotFoam) and MOOSE (Proteus)

description: Study of two OpenFOAM-based liquid-metal magnetohydrodynamics solvers, mhdFoam and epotFoam, and a two solvers in the MOOSE-based application Proteus. OpenFOAM studies cover parallel scaling (strong and weak) of mhdFoam and epotFoam, and validation of mhdFoam and epotFoam against the Shercliff and Hunt analytic solutions for Hartmann numbers of Ha=20, 100 and 1000. Proteus studies cover evaluation of different preconditioners for two methods known as the Kernel method and the Material method, as well as validation of both methods against the Shercliff and Hunt analytic solutions for Ha=20.
description: Programme Area:STEP
DOI: 10.6084/m9.figshare.24637797
title: Supplementary Material for: Urinary Post-Translationally Modified Fetuin-A Protein is Associated with Increased Risk of Graft Failure in Kidney Transplant Recipients

description: Introduction: Urinary fetuin-A has been identified as a biomarker for acute kidney injury and is proposed as a biomarker for early detection of kidney function decline. We investigated whether fetuin-A could serve as a marker of graft failure in kidney transplant recipients (KTR). Methods: Data of KTR with a functioning graft ≥ 1 year that were enrolled in the TransplantLines Food and Nutrition Biobank and Cohort study were used. Graft failure was defined as the need of re-transplantation or (re-)initiation of dialysis). Urinary Fetuin-A was measured using an enzyme-linked immunosorbent assay kit that detected post-translationally modified fetuin-A in the urine (uPTM-FetA). In the main analyses, 24h uPTM-FetA excretion was used. In the sensitivity analyses, we excluded the outliers in 24h uPTM-FetA excretion, and we used uPTM-FetA concentration and uPTM-FetA concentration indexed for creatinine instead of 24h uPTM-FetA excretion. Results: A total of 627 KTR (age 53 ± 13 years, 42% females) were included at 5.3 [1.9-12.2] years after transplantation. Estimated glomerular filtration rate (eGFR) was 52 ± 20 mL/min/1.73 m2 and uPTM-FetA excretion was 34 [17-74] µg/24h. During a median follow-up of 5.3 [4.5-6.0] years after baseline measurements, 73 (12%) KTR developed graft failure. The association of 24h uPTM-FetA excretion with increased risk of graft failure was not constant over time, with increased risk only observed after 3 years from baseline measurements, independent of potential confounders including kidney function and 24h urinary protein excretion (hazard ratio per doubling of 24h uPTM-FetA excretion = 1.31; 95% confidence interval = 1.06-1.61). This finding was robust in the sensitivity analyses. Conclusions: Our findings suggest that uPTM-FetA can be used as a marker for early detection of graft failure in KTR. Further studies are needed to confirm our findings.
DOI: 10.6084/m9.figshare.24637797.v1
title: Supplementary Material for: Urinary Post-Translationally Modified Fetuin-A Protein is Associated with Increased Risk of Graft Failure in Kidney Transplant Recipients

description: Introduction: Urinary fetuin-A has been identified as a biomarker for acute kidney injury and is proposed as a biomarker for early detection of kidney function decline. We investigated whether fetuin-A could serve as a marker of graft failure in kidney transplant recipients (KTR). Methods: Data of KTR with a functioning graft ≥ 1 year that were enrolled in the TransplantLines Food and Nutrition Biobank and Cohort study were used. Graft failure was defined as the need of re-transplantation or (re-)initiation of dialysis). Urinary Fetuin-A was measured using an enzyme-linked immunosorbent assay kit that detected post-translationally modified fetuin-A in the urine (uPTM-FetA). In the main analyses, 24h uPTM-FetA excretion was used. In the sensitivity analyses, we excluded the outliers in 24h uPTM-FetA excretion, and we used uPTM-FetA concentration and uPTM-FetA concentration indexed for creatinine instead of 24h uPTM-FetA excretion. Results: A total of 627 KTR (age 53 ± 13 years, 42% females) were included at 5.3 [1.9-12.2] years after transplantation. Estimated glomerular filtration rate (eGFR) was 52 ± 20 mL/min/1.73 m2 and uPTM-FetA excretion was 34 [17-74] µg/24h. During a median follow-up of 5.3 [4.5-6.0] years after baseline measurements, 73 (12%) KTR developed graft failure. The association of 24h uPTM-FetA excretion with increased risk of graft failure was not constant over time, with increased risk only observed after 3 years from baseline measurements, independent of potential confounders including kidney function and 24h urinary protein excretion (hazard ratio per doubling of 24h uPTM-FetA excretion = 1.31; 95% confidence interval = 1.06-1.61). This finding was robust in the sensitivity analyses. Conclusions: Our findings suggest that uPTM-FetA can be used as a marker for early detection of graft failure in KTR. Further studies are needed to confirm our findings.
DOI: 10.6084/m9.figshare.24541987
title: Supplementary Material for: Validation and development of Voice Handicap Index-Throat (VHI-T) for Koreans

description: Introduction: This study aimed to develop, validate, and analyze the reliability of the Korean version of the Voice Handicap Index-Throat (VHI-Tk). Methods: This prospective study included 103 patients in the case group with voice problems (18 with functional dysphonia, 44 with mass in the larynx, 18 with neurological voice disorder, 23 with throat problems) and 27 in the control group without voice problems. All participants completed these questionnaires at their initial visit: the Korean version of the Voice Handicap Index (K-VHI), VHI-Tk, and the Korean version of the Voice Symptom Scale (K-VoiSS). Case group patients in the case group re-completed the VHI-Tk questionnaire to assess test-retest reliability. Finally, a one-way analysis of variance was implemented to assess differences in VHI-Tk scores among the four diagnosis types in the case group. Results: The VHI-Tk scores in the case group were significantly higher than in the control group. The VHI-Tk was significantly correlated with the subscales of K-VHI and K-VoiSS. The VHI-Tk has significant test-retest reliability, and its internal consistency is good to excellent (Cronbach's alpha correlation coefficient range: 0.895–0.901). There was significant difference in the mean VHI-Tk scores according to the four diagnosis types (throat problems group &gt; neurological voice disorder group). Conclusion: We validated the VHI-T questionnaire to measure self-perceived voice and throat problems among Koreans. A large sample size and various diagnosis types are required in future studies to fully validate the VHI-T for use in multiple cultures.
DOI: 10.15151/esrf-es-1404021384
title: Structure elucidation of PANX1 R217H mutant

description: Pannexins are large pore ion channels involved in the release of ATP. A congneital mutant of PANX1 is known to block this ion channel. We observed that this happens through a gating residue that shifts into the pore to block the channel. We demonstrated this for our manuscript with a low resolution structure 3.9 angstroms. We would like to obtain the structure of this mutant channel at a high resolution to mark the changes in the channel precisely.
DOI: 10.17026/dans-zf6-hj8u
title: STRAP

description: This research project aimed to safely reduce antibiotic prescriptions in children under five suspected of a lower respiratory tract infection (RTI) at the emergency department (ED), by implementing a clinical decision rule.DesignIn a stepped-wedge, cluster randomized trial we included children aged one month to five years presenting with fever and cough or dyspnoea to eight EDs in the Netherlands . In the pre-intervention phase children received usual care. During the intervention phase a validated clinical prediction model (Feverkidstool) including clinical characteristics and C-reactive protein was implemented as a decision rule guiding antibiotic prescription. We obtained data of 999 children (61% male, median age 17 months (IQR 9 to 30)) between January 1, 2016 and September 30, 2018; 402 during the intervention phase. Data include general and clinical characteristics, interventions (diagnostic tests, hospitalisation), and for a subset of patients microbiological data are available
DOI: 10.17026/dans-zva-4w8b
title: Interview met prof. dr. J. Huisman

description: Interviews in het kader van promotieonderzoek (2012-2017) naar de omgang met door mensen en landbouwhuisdieren gedeelde infectieziekten ('zoönosen') in Nederland gedurende de twintigste eeuw, in het bijzonder met betrekking tot de casus Salmonella (1951-1978) in dat onderzoek. Het interview gaat niet alleen over Salmonella, maar over de professionele loopbaan van prof. dr. Huisman in het algemeen en zijn werk bij de GGD in Rotterdam en de Gezondheidsraad.
DOI: 10.17026/dans-z56-qz5h
title: Interview met drs. J. Goebbels

description: Interview in het kader van promotieonderzoek (2012-2017) naar de omgang met door mensen en landbouwhuisdieren gedeelde infectieziekten ('zoönosen') in Nederland gedurende de twintigste eeuw, in het bijzonder met betrekking tot de casus BSE (1988-2001) in dat onderzoek. Het interview gaat niet alleen over Bovine Spongiforme Encefalopathie (BSE) / 'gekkekoeienziekte', maar ook over de professionele loopbaan van drs. Goebbels in het algemeen en zijn werk bij de Veterinaire Hoofdinspectie van de Volksgezondheid en de Centrale Organisatie voor de Vleessector.
DOI: 10.17026/dans-xgt-9w3h
title: Predictors of stunting with particular focus on complementary feeding practices: A cross-sectional study in the northern province of Rwanda

description: Stunting or linear growth retardation is a widespread global problem, especially in developing countries. Worldwide, it is estimated that 150.8 million children (22.2%) of children less than five years are stunted. Africa and Asia have the highest number of stunted pre‐school children with an estimate of 58 million and 87 million respectively. However, Africa has the highest stunting prevalence of 30.3% compared to Asia which has 23.2%Stunting occurs when a child is not growing in height in accordance with his/her potential. Linear growth retardation or impaired linear growth are other terms used for stunting. Stunting is the result of multiple circumstances and determinants, including antenatal, intra‐uterine and postnatal malnutrition (de Onis et al., 2012). Stunting is defined as the proportion of children whose height‐per‐age falls below ‐ 2SD of the Z‐score of the WHO reference population
DOI: 10.6084/m9.figshare.22153647
title: Examining frequency and directionality of Palaeolithic sea-crossing over the Korea/Tsushima Strait: a synthesis

description: Offshore landmasses in the Western Pacific were colonized during the Late Pleistocene through deliberate seafaring by modern humans. However, our knowledge of the developmental process of the Palaeolithic seafaring is still limited due to lack of reliable chronology for such seafaring. To contribute to this issue, we synthesize lines of evidence on repeated sea-crossings over the Korea/Tsushima Strait, a major passage to the Japanese archipelago. Shortly after the earliest evidence of flake assemblages around 39,000–37,000 cal BP, a sudden appearance of blade reduction is observed, suggesting multiple sea-crossings over this strait in the early Upper Palaeolithic. Subsequently, a unique type of stemmed points spread across the strait, signaling another sea-crossing during 29,300–27,500 cal BP. Furthermore, the obsidian provenance analysis suggests bidirectional sea-crossings during the Last Glacial Maximum. These sea-crossings seem to have occurred regardless of narrowness of the strait with changing sea level, whereas it is possible that bidirectional crossing was triggered by this factor.
DOI: 10.6084/m9.figshare.22153647.v1
title: Examining frequency and directionality of Palaeolithic sea-crossing over the Korea/Tsushima Strait: a synthesis

description: Offshore landmasses in the Western Pacific were colonized during the Late Pleistocene through deliberate seafaring by modern humans. However, our knowledge of the developmental process of the Palaeolithic seafaring is still limited due to lack of reliable chronology for such seafaring. To contribute to this issue, we synthesize lines of evidence on repeated sea-crossings over the Korea/Tsushima Strait, a major passage to the Japanese archipelago. Shortly after the earliest evidence of flake assemblages around 39,000–37,000 cal BP, a sudden appearance of blade reduction is observed, suggesting multiple sea-crossings over this strait in the early Upper Palaeolithic. Subsequently, a unique type of stemmed points spread across the strait, signaling another sea-crossing during 29,300–27,500 cal BP. Furthermore, the obsidian provenance analysis suggests bidirectional sea-crossings during the Last Glacial Maximum. These sea-crossings seem to have occurred regardless of narrowness of the strait with changing sea level, whereas it is possible that bidirectional crossing was triggered by this factor.
DOI: 10.6084/m9.figshare.23277041
title: Raw data for Yuan et al., 2023 litter initial concentrations of K, Ca, and Mg

description: Raw data for Yuan et al., 2023 litter initial concentrations of K, Ca, and Mg.
DOI: 10.17026/dans-zzd-nw4a
title: fMRI responses during perceptual decision-making at 3 and 7 Tesla in human cortex, striatum, and brainstem

description: Authors: Colizoli, O., de Gee, J. W., van der Zwaag, W. & Donner, T. H.Abstract: While functional magnetic resonance imaging (fMRI) at ultra-high field (7 Tesla) promises a general increase in sensitivity compared to lower field strengths, the benefits may be most pronounced for specific applications. The current study aimed to evaluate the relative benefit of 7 T over 3 T fMRI for the assessment of responses evoked in different brain regions by a well-controlled cognitive task. At 3 T and 7 T, the same participants made challenging perceptual decisions about visual motion combined with monetary rewards for correct choices. Previous work on this task has extensively characterized the underlying cognitive computations and single-cell responses in cortical and subcortical structures. We quantified the evoked fMRI responses in extrastriate visual cortical areas, the striatum, and the brainstem during the decision interval and the post-feedback interval of the task. The dependence of response amplitudes on field strength during the decision interval differed between cortical, striatal, and brainstem regions, with a generally bigger 7 T vs. 3 T benefit in subcortical structures. We also found stronger responses during relatively easier than harder decisions at 7 T for dopaminergic midbrain nuclei, in line with reward expectation. Our results demonstrate the potential of 7 T fMRI for illuminating the contribution of small brainstem nuclei to the orchestration of cognitive computations in the human brain.
DOI: 10.6084/m9.figshare.23277041.v1
title: Raw data for Yuan et al., 2023 litter initial concentrations of K, Ca, and Mg

description: Raw data for Yuan et al., 2023 litter initial concentrations of K, Ca, and Mg.
DOI: 10.17026/dans-xge-b8e3
title: Acceptability of innovative culture-based antibiotic prophylaxis strategies: a multi-method study on experiences regarding transrectal prostate biopsy

description: The acceptability of innovative medical strategies among healthcare providers and patients affects their uptake in daily clinical practice. To explore experiences of healthcare providers and patients with culturebased antibiotic prophylaxis in transrectal prostate biopsy with three swabscreening scenarios: self-sampling at home, self-sampling in the hospital and sampling by a healthcare provider. We performed focus group interviews with urologists and medical microbiologists from 11 hospitals and six connected clinical microbiological laboratories. We used Flottorp's comprehensive checklist for identifying determinants of practice to guide data collection and analysis. The experiences of 10 laboratory technicians from five laboratories and 452 patients from nine hospitals were assessed using a questionnaire. The database contains the results of the questionnaires sent to patients and the experiences of laboratory technicians.
DOI: 10.17026/dans-x3z-tepy
title: Amyloid pathology and vascular disease in focus: exploring interaction in two pathways towards neurodegeneration

description: Vascular pathology and amyloid-β pathology could act as independent processes leading to dementia. Alternatively, both pathways may directly influence each other. We assess the relation between vascular pathology, amyloid-β pathology, and cognition.