cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28200589.v1
title: Predicting suitable habitats for the Brazilian peppertree biological control agent Pseudophilothrips ichini (Thysanoptera: Phlaeothripidae) in Florida

description: Invasive plants are rapidly entering new ecosystems due to globalisation, increased trade, and frequent disturbances of natural habitats. <i>Schinus terebinthifolia</i> Raddi, known as the Brazilian peppertree, is a particularly aggressive invasive shrub in Florida, Hawaii, Texas, and California. Due to its aggressive growth and the damage it can cause to ecological systems, it is considered one of the worst upland invasive species in the state of Florida, prompting extensive biological control efforts. The classical biological control agent, <i>Pseudophilothrips ichini</i>, was approved for release in Florida in 2019, with over 6 million thrips released to date. However, the establishment and persistence of these thrips have been inconsistent, and little research has been conducted to understand these patterns. Here, we employ ecological niche modelling as a tool to predict suitable habitats for Brazilian peppertree and <i>P. ichini</i>. Ecological niche models were calibrated using location data of both organisms from their native ranges and bioclimatic data from WorldClim. These models accurately predicted the potential distribution of Brazilian peppertree (AUC<sub>training </sub>= 0.914, AUC<sub>validation</sub> = 0.913) and <i>P. ichini</i> (AUC<sub>training </sub>= 0.934, AUC<sub>validation</sub> = 0.918). The projections indicated that most of Florida is climatically suitable for the Brazilian peppertree, aligning with its known distribution. However, discrepancies were observed between the projected and actual distribution of <i>P. ichini</i>, suggesting that additional environmental or biotic factors may influence their establishment. Further research is necessary to refine these models and enhance the integration of <i>P. ichini</i> into pest management programmes to better conserve time, resources, and funds.
DOI: 10.6084/m9.figshare.27329698
title: PRX004 in variant amyloid transthyretin (ATTRv) amyloidosis: results of a phase 1, open-label, dose-escalation study

description: The investigational monoclonal antibody PRX004 is designed to specifically target and deplete TTR amyloid. Here, we report on the safety, tolerability, pharmacokinetics, pharmacodynamics and preliminary clinical activity of PRX004 in patients with ATTRv amyloidosis. This global, multicentre, phase 1 trial comprised a 3 + 3 dose-escalation phase and a long-term extension (LTE) phase (NCT03336580). In the dose-escalation phase, patients received PRX004 (0.1, 0.3, 1, 3, 10 or 30 mg/kg), administered intravenously every 28 days for 3 months. In the LTE, eligible patients could receive up to 15 additional doses. Patients who received doses of ≥3 mg/kg for ≥9 months were assessed for Global Longitudinal Strain (GLS) and Neuropathy Impairment Score (NIS). The primary objective was to determine the maximum tolerated dose (MTD) of PRX004. Overall, 21 patients with ATTRv amyloidosis completed the dose-escalation phase; 17 subsequently enrolled in the LTE. The MTD was not reached. PRX004 was well tolerated at all doses, with dose-proportional exposure. GLS and NIS were improved or maintained over 9 months (<i>n</i> = 7). PRX004 was well tolerated in patients with ATTRv amyloidosis and demonstrated potential clinical activity. A phase 2 randomised controlled trial in ATTR cardiomyopathy is ongoing (NCT05442047).
DOI: 10.6084/m9.figshare.27329698.v1
title: PRX004 in variant amyloid transthyretin (ATTRv) amyloidosis: results of a phase 1, open-label, dose-escalation study

description: The investigational monoclonal antibody PRX004 is designed to specifically target and deplete TTR amyloid. Here, we report on the safety, tolerability, pharmacokinetics, pharmacodynamics and preliminary clinical activity of PRX004 in patients with ATTRv amyloidosis. This global, multicentre, phase 1 trial comprised a 3 + 3 dose-escalation phase and a long-term extension (LTE) phase (NCT03336580). In the dose-escalation phase, patients received PRX004 (0.1, 0.3, 1, 3, 10 or 30 mg/kg), administered intravenously every 28 days for 3 months. In the LTE, eligible patients could receive up to 15 additional doses. Patients who received doses of ≥3 mg/kg for ≥9 months were assessed for Global Longitudinal Strain (GLS) and Neuropathy Impairment Score (NIS). The primary objective was to determine the maximum tolerated dose (MTD) of PRX004. Overall, 21 patients with ATTRv amyloidosis completed the dose-escalation phase; 17 subsequently enrolled in the LTE. The MTD was not reached. PRX004 was well tolerated at all doses, with dose-proportional exposure. GLS and NIS were improved or maintained over 9 months (<i>n</i> = 7). PRX004 was well tolerated in patients with ATTRv amyloidosis and demonstrated potential clinical activity. A phase 2 randomised controlled trial in ATTR cardiomyopathy is ongoing (NCT05442047).
DOI: 10.6084/m9.figshare.27650876
title: High frequency of occult transthyretin and apolipoprotein AI–type amyloid in aortic valves removed by valve replacement for aortic stenosis

description: A high incidence of valvular involvement of amyloid in the setting of aortic stenosis (AS) has been reported. Amyloid derived from ApoAI (AApoAI) can form local amyloid deposits in the aortic valve. Although a high prevalence of concomitant severe AS and cardiac transthyretin-type amyloidosis (ATTR) has been reported, the prevalence of valvular involvement by ATTR and AApoAI is unclear. Using immunostaining and mass spectrometry, we analysed amyloid proteins in 97 aortic valves removed for valve replacement due to AS at Kyoto Prefectural University of Medicine between 2014 and 2021. Clinical information was also reviewed. Amyloid deposits were found in 44 cases (45%), of which 30 cases (68%) involved ATTR and 33 cases (75%) AApoAI. Statistical analysis showed significantly lower age and E/e′ among amyloid-positive cases compared with amyloid-negative cases and significantly lower brain natriuretic peptide, higher fractional shortening, and higher left ventricular ejection fraction among ATTR-positive cases compared with ATTR-negative cases. Seven recent patients underwent bone scintigraphy and ATTR cardiomyopathy was observed in only one case. AS symptoms can manifest earlier in patients with amyloid or ATTR deposition in the aortic valve than in patients without such deposition, even though left ventricular function is preserved.
DOI: 10.6084/m9.figshare.27650876.v2
title: High frequency of occult transthyretin and apolipoprotein AI–type amyloid in aortic valves removed by valve replacement for aortic stenosis

description: A high incidence of valvular involvement of amyloid in the setting of aortic stenosis (AS) has been reported. Amyloid derived from ApoAI (AApoAI) can form local amyloid deposits in the aortic valve. Although a high prevalence of concomitant severe AS and cardiac transthyretin-type amyloidosis (ATTR) has been reported, the prevalence of valvular involvement by ATTR and AApoAI is unclear. Using immunostaining and mass spectrometry, we analysed amyloid proteins in 97 aortic valves removed for valve replacement due to AS at Kyoto Prefectural University of Medicine between 2014 and 2021. Clinical information was also reviewed. Amyloid deposits were found in 44 cases (45%), of which 30 cases (68%) involved ATTR and 33 cases (75%) AApoAI. Statistical analysis showed significantly lower age and E/e′ among amyloid-positive cases compared with amyloid-negative cases and significantly lower brain natriuretic peptide, higher fractional shortening, and higher left ventricular ejection fraction among ATTR-positive cases compared with ATTR-negative cases. Seven recent patients underwent bone scintigraphy and ATTR cardiomyopathy was observed in only one case. AS symptoms can manifest earlier in patients with amyloid or ATTR deposition in the aortic valve than in patients without such deposition, even though left ventricular function is preserved.
DOI: 10.6084/m9.figshare.27650876.v1
title: High frequency of occult transthyretin and apolipoprotein AI–type amyloid in aortic valves removed by valve replacement for aortic stenosis

description: A high incidence of valvular involvement of amyloid in the setting of aortic stenosis (AS) has been reported. Amyloid derived from ApoAI (AApoAI) can form local amyloid deposits in the aortic valve. Although a high prevalence of concomitant severe AS and cardiac transthyretin-type amyloidosis (ATTR) has been reported, the prevalence of valvular involvement by ATTR and AApoAI is unclear. Using immunostaining and mass spectrometry, we analysed amyloid proteins in 97 aortic valves removed for valve replacement due to AS at Kyoto Prefectural University of Medicine between 2014 and 2021. Clinical information was also reviewed. Amyloid deposits were found in 44 cases (45%), of which 30 cases (68%) involved ATTR and 33 cases (75%) AApoAI. Statistical analysis showed significantly lower age and E/e′ among amyloid-positive cases compared with amyloid-negative cases and significantly lower brain natriuretic peptide, higher fractional shortening, and higher left ventricular ejection fraction among ATTR-positive cases compared with ATTR-negative cases. Seven recent patients underwent bone scintigraphy and ATTR cardiomyopathy was observed in only one case. AS symptoms can manifest earlier in patients with amyloid or ATTR deposition in the aortic valve than in patients without such deposition, even though left ventricular function is preserved.
DOI: 10.6084/m9.figshare.28062652
title: Clinical and genetic features of AGel amyloidosis caused by novel gelsolin variant and its impact on cardiac function and conduction disorders

description: Clinical and genetic features of AGel amyloidosis caused by novel gelsolin variant and its impact on cardiac function and conduction disorders
DOI: 10.6084/m9.figshare.28062652.v1
title: Clinical and genetic features of AGel amyloidosis caused by novel gelsolin variant and its impact on cardiac function and conduction disorders

description: Clinical and genetic features of AGel amyloidosis caused by novel gelsolin variant and its impact on cardiac function and conduction disorders
DOI: 10.25829/bexis.27226-4
title: Trap nesting solitary bee species measured on all grassland VIPs 2017-2018

description: Biodiversity loss, often found in intensively managed agricultural landscapes, correlates with reduced ecosystem functioning, e.g. insect pollination and altered floral resource diversity, abundance and composition. To better understand impacts of land-use intensification on wild bee-plant interactions, we investigated how land-use intensification affects the diversity and composition of trap nesting solitary bee species.
description: Theory: We investigated communities of trap nesting solitary bees, in grasslands along a land-use intensity gradient across three bioregions in Germany. - Trap nests were located in each bioregion (Swabian Alb, Hainich Dün, Schorfheide Chorin) at 9 plots (VIP plots). - 4 artificial perpendicular trap nests, pointing in every compass direction, were installed at the fence of a weather station located on each of the 27 plots - Trap nests were checked for occupied reed sticks every 8-10 weeks from March to October to cover the whole flight period of trap nesting solitary bees|Measurements Type: Classification of trap nesting solitary bee species|instruments: Trap nests: - Each trap nest contained a plastic tube (sewer pipes (length 110-120 cm); cut smaller pieces with 20 cm length) with 60-80 hollow reed sticks (length ~ 20 cm, width 4-12 mm). - Trap nest protection (wire mesh; mesh width (min 1.3-1.5 mm)). - Reed sticks with closed entrances were removed from plastic tubes, replaced with new reed sticks, and then directly and gently (temperature protection!) transported to the lab at the University of Würzburg|calibration: - Sterile forceps|procedures: Bee species were classified by reed nest closures and bee morphology.|
DOI: 10.6084/m9.figshare.28409192.v1
title: Risk of bias 2 assessment

description: RoB2 assessment, justification
DOI: 10.6084/m9.figshare.28409204
title: Sulawesi_teleseismic_picks.zip

description: The folder contains all the arrival-time residuals from the 89 stations deployed in Sulawesi
DOI: 10.5281/zenodo.14865490
title: SMASH v1.0.2 cases

description: This dataset includes the input data and scripts used for the three SMASH applications presented in the manuscript submitted to Geosci. Model Dev..

The input data have been pre-processed to conform to SMASH conventions, and only one year of atmospheric data is provided to keep the dataset manageable.
DOI: 10.5281/zenodo.14865491
title: SMASH v1.0.2 cases

description: This dataset includes the input data and scripts used for the three SMASH applications presented in the manuscript submitted to Geosci. Model Dev..

The input data have been pre-processed to conform to SMASH conventions, and only one year of atmospheric data is provided to keep the dataset manageable.
DOI: 10.25829/bexis.31182-5
title: Arthropod (per year, 2008-2017) and environmental data (climate, land use, land cover) from grasslands used in "Unravelling insect declines: can space replace time?", Biology Letters

description: To compare trends in arthropod species numbers between space and time, arthropod data from the sweep net samples (2008-2017) in grasslands were used. We tested whether trends over time are also found within single years (i.e. in space). The dataset contains, pooled per sampling year, arthropod individual numbers (Araneae, Coleoptera, Hemiptera, Orthoptera) and associated environmental data (climate, land use, land cover). This data is only to complement the publication "Unravelling insect declines: can space replace time?" by Blüthgen et al. in Biology Letters. Data are a combination of the yearly grassland arthropod data in dataset 25786, the LUI input data in dataset 25086, climate data (19007), and land cover data (26007).
description: Sampling design: Data from the grassland plots are used (2008-2017). Plots (150 in total, 50 per region) are 50 m x 50 m in size. Twice per year (June and August) all arthropods of the herb layer were sampled by sweep-netting a 150 m transect comprising three of the plot boarders (with 60 double sweeps per plot). Sampling was restricted to dry and fair weather.<br>Sample preparation: Collected specimens were first sorted to order level. All adult Araneae, Coleoptera, Hemiptera (Heteroptera and Auchenorrhyncha), and Orthoptera were identified to species level by the taxonomic experts named in the acknowledgements.<br>Sample analysis: For analyses, data from both sampling events were pooled per plot.<br>Equipment: Sweep net<br>Data preparation: Land use per plot (original dataset 25086) is quantified in each year by its components (mowing, fertilization, grazing). To account for weather/climate effects, the mean winter temperature (i.e. the winter before the sampling year) and mean precipitation sum of the growing period (i.e. the sampling year) are included (original dataset 19007). To test for the influence of the surrounding landscape on insect numbers, cover of grasslands and arable land in 1000 m radius around a plot is taken (original dataset 26007).
DOI: 10.15468/dl.mtabxn
title: Occurrence Download

description: A dataset containing 545972 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((21.87116 47.4619,26.77944 47.4619,26.77944 50.62077,21.87116 50.62077,21.87116 47.4619))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 545972 records from 181 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000099-250213122211068/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/yee3-gvey
title: VOC (volatile organic compounds) at Hyytiälä

description: Measurement of VOC (volatile organic compounds) at Hyytiälä
DOI: 10.48597/6e5s-rv3w
title: Measurement of VOC (volatile organic compounds) at Hyytiälä

description: Measurement of VOC (volatile organic compounds) at Hyytiälä
DOI: 10.48597/32ue-x7et
title: Measurement of VOC (volatile organic compounds) at Hyytiälä

description: Measurement of VOC (volatile organic compounds) at Hyytiälä
DOI: 10.48597/fzw8-kp3b
title: Measurement of VOC (volatile organic compounds) at Hyytiälä

description: Measurement of VOC (volatile organic compounds) at Hyytiälä
DOI: 10.48597/ryzr-ra36
title: VOC (volatile organic compounds) at Hyytiälä

description: Measurement of VOC (volatile organic compounds) at Hyytiälä
DOI: 10.15468/dl.uj9mrw
title: Occurrence Download

description: A dataset containing 2325424 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-16.26412 40.62619,-13.1662 29.90781,33.30273 29.23422,89.06544 39.44024,72.80132 71.8017,43.371 72.97299,17.81309 72.04203,-3.87241 61.53972,-16.26412 40.62619))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Apus apus (Linnaeus, 1758)",
 "Year 1998-2025"
 ]
}

 The dataset includes 2325424 records from 4160 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000132-250213122211068/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wtvbwt
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ottelia luapulana Symoens"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023161-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.38bxnz
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "Geometry POLYGON((-76.57925 -13.68503,-76.6578 -14.38314,-71.43004 -18.10024,-69.59065 -17.31635,-68.79196 -16.45948,-69.00978 -13.30217,-70.97019 -13.30217,-71.41975 -14.45006,-71.8554 -13.83987,-73.95629 -12.41501,-75.1634 -12.97853,-76.57925 -13.68503))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bubo virginianus (J.F.Gmelin, 1788)"
 ]
}

 The dataset includes 17 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023162-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mdvfr6
title: Occurrence Download

description: A dataset containing 152 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ottelia muricata (C.H.Wright) Dandy"
 ]
}

 The dataset includes 152 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023163-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9da8gu
title: Occurrence Download

description: A dataset listing the 25008 species recorded in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "StateProvince is HAwaii",
 "TaxonKey is Animalia"
 ]
}

 The dataset's 25008 records were derived from 442 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023142-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8qy43c
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Allium amethystinum Tausch, Allium amethysticum Tausch)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 91 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023164-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5vwxs3
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ottelia scabra Baker"
 ]
}

 The dataset includes 24 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023166-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kthksq
title: Occurrence Download

description: A dataset containing 262 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Material citation, Machine Observation, Material sample, Specimen)",
 "DatasetKey is one of (INSDC Sequences, Paleobiology Database, iNaturalist Research-grade Observations, Sharing vertebrate occurrence data from camera traps in Asia)",
 "Geometry POLYGON((107.12234 33.33722,109.07069 32.98883,110.18609 33.39347,111.04512 34.08802,111.20632 34.68285,108.56205 34.46477,106.62269 35.02246,106.01751 34.3464,106.03931 33.43045,107.12234 33.33722))",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (CR, EN, NT, VU, LC, NE)",
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 262 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023165-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gsapfn
title: Occurrence Download

description: A dataset containing 303 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Ceratophyllum demersum L.",
 "Year 1000-2024"
 ]
}

 The dataset includes 303 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023167-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vt6fuj
title: Occurrence Download

description: A dataset containing 79355 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dendrobium Sw."
 ]
}

 The dataset includes 79355 records from 318 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023159-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b78m4p
title: Occurrence Download

description: A dataset containing 571 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Alyssum strigosum Banks & Sol., Alyssum strigulosum Amo)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 571 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023168-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.epz4xn
title: Occurrence Download

description: A dataset containing 1513 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ottelia ulvifolia (Planch.) Walp."
 ]
}

 The dataset includes 1513 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023170-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.