cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/9941c3394e7b6bcd6bb495dc3b547238
title: Jornada Basin LTER:  NPP G-IBPE meteorological station: 1-second summary precipitation data:  2013
         - present

description: 1-second summary precipitation data at NPP G-IBPE met station. Total precipitation per second is
            recorded only if there is measurable precipitation. This is recorded at an automated meteorological
            station installed at Jornada LTER NPP G-IBPE site.. This climate station is operated by the Jornada
            LTER Program.         IMPORTANT: Rainfall is only recorded when a bucket tip occurs on the tipping
            bucket rain gauge. If there is missing data due to equipment or other problems, there will be no
            indication of this within this dataset. The user needs to review precipitation values in the 30
            minute or hourly summary datasets to determine if there are missing data in this 1 second detailed
            precipitation dataset. Reference the package i.d.'s knb-lter-jrn.210437020, knb-lter-jrn.210437035,
            and knb-lter-jrn.210437050 for the NPP G-IBPE met station 30 minute, hourly, and daily summary
            datasets, respectively.     This is an ONGOING dataset.
DOI: 10.6073/pasta/c739998caafe5aa0f3d2f7c5f1c2bda1
title: Jornada Basin LTER:  NPP G-IBPE meteorological station: 30-minute summary data:  2013 - present

description: 30-minute summary data at NPP G-IBPE met station. Average air temperature, relative humidity, wind
            speed and wind direction are measured and calculated based on 1-second scan rate of sensors at an
            automated meteorological station installed at Jornada LTER NPP G-IBPE site. Wind speed is measured
            at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative
            humidity at approximate 2.5m. This climate station is operated by the Jornada LTER Program.
            This is an ONGOING dataset.
DOI: 10.6073/pasta/12090b988cb7616641b030f126d9f16d
title: Jornada Basin LTER:  NPP G-IBPE meteorological station: Daily average soil volumetric water content
         data:  2013 - present

description: Daily average of 30-minute Volumetric Water Content at NPP G-IBPE met station. Collection of soil
            volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental
            monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water
            dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk
            dielectric permittivity are measured and calculated at an automated meteorological station
            installed at Jornada LTER NPP G-IBPE site. The daily average at 3 soil depths is calculated from
            measurements made every 30 minutes at 10 cm, 20 cm, and 30 cm.     This is an ONGOING dataset.
DOI: 10.5281/zenodo.3246281
title: FT45 Stehle 12-key tenoroon:  measurements, photos, endoscopic video

description: Dataset of FT45 Stehle 12-key tenoroon containing measurements, photos, and an endoscopic video.
DOI: 10.5281/zenodo.3246282
title: FT45 Stehle 12-key tenoroon:  measurements, photos, endoscopic video

description: Dataset of FT45 Stehle 12-key tenoroon containing measurements, photos, and an endoscopic video.
DOI: 10.6073/pasta/943ccb91f7dd957687b290ab1569daea
title: Jornada Basin LTER:  NPP G-IBPE meteorological station: 5-minute summary wind and air temperature
         data:  2013 - present

description: 5-minute summary data at NPP G-IBPE met station. Average air temperature, wind speed and wind
            direction are measured and calculated based on 1-second scan rate of sensors at an automated
            meteorological station installed at Jornada LTER NPP G-IBPE site. Wind speed is measured at 75 cm,
            150 cm, and 300 cm, wind direction at approximately 3m, and air temperature at approximate 2.5m.
            This climate station is operated by the Jornada LTER Program.     This is an ONGOING dataset.
DOI: 10.6073/pasta/faee669ae8daf9c30b64d3c5863a41d9
title: Jornada Basin LTER:  NPP G-IBPE meteorological station: 30-minute soil volumetric water content
         data:  2013 - present

description: 30-minute Soil Moisture data at NPP G-IBPE met station. Collection of soil volumetric water content
            data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the
            Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content,
            bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured every
            30 minutes at an automated meteorological station installed at Jornada LTER NPP G-IBPE site.
            Measurements are made every 30 minutes at 10 cm, 20 cm, and 30 cm soil depths.     This is an
            ONGOING dataset.
DOI: 10.25919/5d19e24c9969c
title: Historical reconstruction unveils the risk of mass mortality and ecosystem collapse during pancontinental megadrought

description: There is growing concern that an increase in the frequency and severity of drought under climate change could drive major changes in Australian ecosystems. This collection provides data that supports recent research reported in Godfree et al. 2019 (PNAS, in press). The database contains information on the impact of the Federation Drought Period (1891-1903) on Australian biota extracted from newspaper articles and other historical literature.
DOI: 10.5281/zenodo.3256421
title: SNP call data for: The current epidemic of the barley pathogen Ramularia collo-cygni derives from a recent population expansion and shows global admixture

description: Ramularia Leaf Spot is becoming an ever increasing problem in main barley growing regions since the 1980s, causing up to 70% yield loss in extreme cases. Yet, the causal agent <em>Ramularia collo-cygni</em>, remains poorly studied. The diversity of the pathogen in the field thus far remains unknown. Furthermore, it is unknown to which extend the pathogen has a sexual reproductive cycle. To date, the teleomorph of <em>R. collo-cygni</em> has not been observed.

To study the genetic diversity of <em>R. collo-cygni </em>and to get more insights into its biology, we sequenced the genomes of 19 <em>R. collo-cygn</em>i isolates from multiple geographic locations and diverse hosts. Here we share the SNP call data as well as the reference genome.

The reference genome files and assembly can be found on ENI: GCA_900074925.1

https://www.ebi.ac.uk/ena/data/view/GCA_900074925.1

The raw sequence data is also available through ENI: ERX2296228

https://www.ebi.ac.uk/ena/data/view/ERX2296228
DOI: 10.5281/zenodo.3256422
title: SNP call data for: The current epidemic of the barley pathogen Ramularia collo-cygni derives from a recent population expansion and shows global admixture

description: Ramularia Leaf Spot is becoming an ever increasing problem in main barley growing regions since the 1980s, causing up to 70% yield loss in extreme cases. Yet, the causal agent <em>Ramularia collo-cygni</em>, remains poorly studied. The diversity of the pathogen in the field thus far remains unknown. Furthermore, it is unknown to which extend the pathogen has a sexual reproductive cycle. To date, the teleomorph of <em>R. collo-cygni</em> has not been observed.

To study the genetic diversity of <em>R. collo-cygni </em>and to get more insights into its biology, we sequenced the genomes of 19 <em>R. collo-cygn</em>i isolates from multiple geographic locations and diverse hosts. Here we share the SNP call data as well as the reference genome.

The reference genome files and assembly can be found on ENI: GCA_900074925.1

https://www.ebi.ac.uk/ena/data/view/GCA_900074925.1

The raw sequence data is also available through ENI: ERX2296228

https://www.ebi.ac.uk/ena/data/view/ERX2296228
DOI: 10.5281/zenodo.3228142
title: Data for the paper "Uncovering the birth of the Milky Way through accurate stellar ages with Gaia", accepted in Nature Astronomy

description: Data files used in the paper that contain information that is not available in public catalogues, and that is necessary to produce the figures.

The extended dataset consists of: i) (<strong>a</strong> and <strong>b</strong> panels of figure 1): two tables directly retrieved from the Gaia archive as described in Methods, supplemented by extinction information on a star-by-star basis; the code used to interpolate the 3-D extinction maps by Lallement et al. (2018) can be retrieved from \url{https://github.com/edober/dust_maps_3d}.  ii) (<strong>c</strong> and <strong>d</strong> panels of Figure 1, Figure 2 and panel <strong>a </strong>of Figure 3): two tables with the derived solution CMDs. Two files with the necessary data to define the boxes used to select stars in the blue and red sequences of the halo CMD are also included.  iii) (panel <strong>b</strong> of Figure 3): necessary tables with the age, metallicity and velocity data for the main progenitor and accreted satellite for realisation g15784 of the MaGICC program (Brook et al. 2012). The complete information on the final timestep of that simulation, together with scripts to read and plot the data are also included in the extended dataset.

A explanatory README is contained within the tar file.
DOI: 10.5281/zenodo.3228143
title: Data for the paper "Uncovering the birth of the Milky Way through accurate stellar ages with Gaia", accepted in Nature Astronomy

description: Data files used in the paper that contain information that is not available in public catalogues, and that is necessary to produce the figures.

The extended dataset consists of: i) (<strong>a</strong> and <strong>b</strong> panels of figure 1): two tables directly retrieved from the Gaia archive as described in Methods, supplemented by extinction information on a star-by-star basis; the code used to interpolate the 3-D extinction maps by Lallement et al. (2018) can be retrieved from \url{https://github.com/edober/dust_maps_3d}.  ii) (<strong>c</strong> and <strong>d</strong> panels of Figure 1, Figure 2 and panel <strong>a </strong>of Figure 3): two tables with the derived solution CMDs. Two files with the necessary data to define the boxes used to select stars in the blue and red sequences of the halo CMD are also included.  iii) (panel <strong>b</strong> of Figure 3): necessary tables with the age, metallicity and velocity data for the main progenitor and accreted satellite for realisation g15784 of the MaGICC program (Brook et al. 2012). The complete information on the final timestep of that simulation, together with scripts to read and plot the data are also included in the extended dataset.

A explanatory README is contained within the tar file.
DOI: 10.17632/df7ssybjc5.1
title: Data for: Empowerment through self-improvement skills: The role of learning goals and personal growth initiative

description: This data contains the survey data with nurses on psychological empowerment, personal growth initiative, learning goal orientation, and developmental job experience.
DOI: 10.6073/pasta/3de5c89badb4b5ecfdf49e1679584fc2
title: Jornada Basin LTER:  NPP G-SUMM meteorological station: 30-minute summary data:  2013 - present

description: 30-minute summary data at NPP G-SUMM met station. Average air temperature, relative humidity, wind
            speed, wind direction, and solar radiation are measured and calculated based on 1-second scan rate
            of sensors at an automated meteorological station installed at Jornada LTER NPP G-SUMM site. Wind
            speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air
            temperature and relative humidity at approximate 2.5m. Solar radiation is measured at 3m. This
            climate station is operated by the Jornada LTER Program.     This is an ONGOING dataset.
DOI: 10.5281/zenodo.3246265
title: FT43 Leiberz 7-key fagottino: measurements, photos, endoscopic video

description: Dataset of FT43 Leiberz 7-key fagottino containing measurements, photos, and an endoscopic video.
DOI: 10.5281/zenodo.3246266
title: FT43 Leiberz 7-key fagottino: measurements, photos, endoscopic video

description: Dataset of FT43 Leiberz 7-key fagottino containing measurements, photos, and an endoscopic video.
DOI: 10.6073/pasta/10400d303995b9270631bf74699e96dc
title: Jornada Basin LTER:  NPP G-SUMM meteorological station: 5-minute summary wind and air temperature
         data:  2013 - present

description: 5-minute summary data at NPP G-SUMM met station. Average air temperature, wind speed and wind
            direction are measured and calculated based on 1-second scan rate of sensors at an automated
            meteorological station installed at Jornada LTER NPP G-SUMM site. Wind speed is measured at 75 cm,
            150 cm, and 300 cm, wind direction at approximately 3m, and air temperature at approximate 2.5m.
            This climate station is operated by the Jornada LTER Program.     This is an ONGOING dataset.
DOI: 10.7910/dvn/kab5tt/pwc3yu
title: cell_hypoxia.m

description: :unav
DOI: 10.25387/g3.8284058
title: Supplemental Material for Zeiss et al., 2019

description: <b>S1 Fig 1</b>: Renal scores across all 10 CC strains.
Means and standard error at each weekly time point are shown for each strain,
with a vertical gray line delineating acute (A; 6 weeks) and chronic (C; 12
week) time points. Females are shown on the top panel and males beneath. The
majority of doxorubicin-treated animals (red) demonstrate renal injury
(increased scores) over time compared to age matched vehicle treated controls
(blue).  Strains with p values &lt;0.05
for treatment effect (black asterisk), treatment*sex (gray asterisk), and
treatment*timepoint (white asterisk) interactions are indicated with asterisks
located above each strain name. Strain 40 is very susceptible, with most
doxorubicin-treated animals dying before the end of the study.  <b>S2 Fig 2:</b> Renal, splenic and testicular
pathology in doxorubicin -treated mice. Animals with severe renal pathology (A)
experienced diffuse tubuloglomerular injury. Glomerular pathology was
characterized by increased mesangial matrix, proliferation of parietal
epithelium of Bowman’s capsule (B), and segmental necrosis or fibrosis. Tubular
injury was accompanied by interstitial lympho-histiocytic inflammation (arrow,
C), tubular epithelial atrophy (B, C) and accumulation of hyaline casts (C).
Splenic pathology varied from marked extramedullary hematopoiesis (asterisk, D)
to collapse of red pulp and splenic atrophy (asterisk, E). White pulp remained
intact. Testicular atrophy was characterized by loss of the entire
spermatogenic series (F). Hematoxylin
and eosin, Bar = 100µm (A); 20µm (B), 50µm (C, F), 1mm (D, E) 









<b>S3 Fig 3: </b>Hematologic parameters:<b> </b>Red blood cell counts (RBC, A)
decreased at the acute time point (orange) in almost all strains, except CC051.
Most strains recovered by the chronic time point (blue), but some strains
(CC001, CC011, CC042) still had decreased RBC. Red blood cell distribution
width (RDW, B, an indicator of increased red cell diameter characteristic of
regeneration) was increased in all strains at the acute time point. Most
strains had recovered by the chronic time point, except for CC032 and CC042. We
found that DOX did not cause neutropenia (or lymphopenia, data not shown) at
either the acute (orange) or chronic (blue) time points (C). Many strains
(CC010, CC040, CC041) showed increased neutrophil counts at the acute time
point. This increase persisted at the chronic time point in some strains
(CC010, CC032, CC041). Some strains (CC011, CC040) showed increased platelets
at the acute time point (D), with other strains (CC001, CC019, CC032, CC042)
showed sex-specific increases. This was accompanied by histologic evidence of
marked splenic extramedullary hematopoeisis. Most strains had recovered by the
chronic time point.<b><br></b><b><br></b><b>Supporting Table 2</b>: Statistical analysis of semi-quantitative renal
scoring.<b></b>
DOI: 10.25387/g3.8284058.v1
title: Supplemental Material for Zeiss et al., 2019

description: <b>S1 Fig 1</b>: Renal scores across all 10 CC strains.
Means and standard error at each weekly time point are shown for each strain,
with a vertical gray line delineating acute (A; 6 weeks) and chronic (C; 12
week) time points. Females are shown on the top panel and males beneath. The
majority of doxorubicin-treated animals (red) demonstrate renal injury
(increased scores) over time compared to age matched vehicle treated controls
(blue).  Strains with p values &lt;0.05
for treatment effect (black asterisk), treatment*sex (gray asterisk), and
treatment*timepoint (white asterisk) interactions are indicated with asterisks
located above each strain name. Strain 40 is very susceptible, with most
doxorubicin-treated animals dying before the end of the study.  <b>S2 Fig 2:</b> Renal, splenic and testicular
pathology in doxorubicin -treated mice. Animals with severe renal pathology (A)
experienced diffuse tubuloglomerular injury. Glomerular pathology was
characterized by increased mesangial matrix, proliferation of parietal
epithelium of Bowman’s capsule (B), and segmental necrosis or fibrosis. Tubular
injury was accompanied by interstitial lympho-histiocytic inflammation (arrow,
C), tubular epithelial atrophy (B, C) and accumulation of hyaline casts (C).
Splenic pathology varied from marked extramedullary hematopoiesis (asterisk, D)
to collapse of red pulp and splenic atrophy (asterisk, E). White pulp remained
intact. Testicular atrophy was characterized by loss of the entire
spermatogenic series (F). Hematoxylin
and eosin, Bar = 100µm (A); 20µm (B), 50µm (C, F), 1mm (D, E) 









<b>S3 Fig 3: </b>Hematologic parameters:<b> </b>Red blood cell counts (RBC, A)
decreased at the acute time point (orange) in almost all strains, except CC051.
Most strains recovered by the chronic time point (blue), but some strains
(CC001, CC011, CC042) still had decreased RBC. Red blood cell distribution
width (RDW, B, an indicator of increased red cell diameter characteristic of
regeneration) was increased in all strains at the acute time point. Most
strains had recovered by the chronic time point, except for CC032 and CC042. We
found that DOX did not cause neutropenia (or lymphopenia, data not shown) at
either the acute (orange) or chronic (blue) time points (C). Many strains
(CC010, CC040, CC041) showed increased neutrophil counts at the acute time
point. This increase persisted at the chronic time point in some strains
(CC010, CC032, CC041). Some strains (CC011, CC040) showed increased platelets
at the acute time point (D), with other strains (CC001, CC019, CC032, CC042)
showed sex-specific increases. This was accompanied by histologic evidence of
marked splenic extramedullary hematopoeisis. Most strains had recovered by the
chronic time point.<b><br></b><b><br></b><b>Supporting Table 2</b>: Statistical analysis of semi-quantitative renal
scoring.<b></b>
DOI: 10.5523/bris.x4rzhi87ptab2x1pk4aqhbiac
title: Sex and ontogenetic variation in the crest of Numida meleagris: Implications for crested vertebrates
title: Data: Angst et al. Anatomical Record 2019

description: Pictures of the skulls of Guinea fowl (Numida meleagris) in latereal view.
DOI: 10.25345/c5j93q
title: MassIVE MSV000084031 - pseudonocardia_grouping_illumina
title: Samples extracted with EtOAc from monocultures of Pseudonocardia symbionts of Attine ants (Genera Tchachymyrmex).
DOI: 10.5281/zenodo.3265089
title: BSc thesis:"The dynamics and localization of three fluorescent fusions of the periplasmic chaperone Skp in Escherichia coli"

description: This is the full data set containing all primary and derived data generated during this thesis. The title of this thesis is: "The dynamics and localization of three fluorescent fusions of the periplasmic chaperone Skp in Escherichia coli". The experimental work was conducted at the Bacterial Cell Biology & Physiology group of the University of Amsterdam.
DOI: 10.5281/zenodo.3265090
title: BSc thesis:"The dynamics and localization of three fluorescent fusions of the periplasmic chaperone Skp in Escherichia coli"

description: This is the full data set containing all primary and derived data generated during this thesis. The title of this thesis is: "The dynamics and localization of three fluorescent fusions of the periplasmic chaperone Skp in Escherichia coli". The experimental work was conducted at the Bacterial Cell Biology & Physiology group of the University of Amsterdam.
DOI: 10.25345/c5ss8m
title: MassIVE MSV000084029 - Revealing dynamic protein acetylation across subcellular compartments
title: Protein acetylation is a widespread post-translational modification implicated in many cellular processes. Recent advances in mass spectrometry have enabled the cataloging of thousands of sites throughout the cell, however identifying regulatory acetylation marks has proven to be a daunting task. Knowledge of the kinetics and stoichiometry of site-specific acetylation are important factors to uncover function. Here, an improved method of quantifying acetylation stoichiometry was developed and validated, providing a detailed landscape of dynamic acetylation stoichiometry within cellular compartments. The dynamic nature of site-specific acetylation in response to serum stimulation was revealed. In two distinct human cell lines, growth factor stimulation led to site-specific, temporal acetylation changes, revealing diverse kinetic profiles that clustered into several groups. Overlap of dynamic acetylation sites among the two cell types suggested similar regulatory control points across major cellular pathways that include splicing, translation, and protein homeostasis. Rapid increases in acetylation on protein translational machinery suggests a positive regulatory role under pro-growth conditions. Lastly, higher median stoichiometry was observed in cellular compartments where active acetyltransferases are well-described.
DOI: 10.6073/pasta/e55c2076705ddffbc95729aa8e5a1802
title: Jornada Basin LTER:  NPP G-SUMM meteorological station: 1-second summary precipitation data:  2013
         - present

description: 1-second summary precipitation data at NPP G-SUMM met station. Total precipitation per second is
            recorded only if there is measurable precipitation. This is recorded at an automated meteorological
            station installed at Jornada LTER NPP G-SUMM site.. This climate station is operated by the Jornada
            LTER Program.         IMPORTANT: Rainfall is only recorded when a bucket tip occurs on the tipping
            bucket rain gauge. If there is missing data due to equipment or other problems, there will be no
            indication of this within this dataset. The user needs to review precipitation values in the 30
            minute or hourly summary datasets to determine if there are missing data in this 1 second detailed
            precipitation dataset. Reference the package i.d.'s knb-lter-jrn.210437021, knb-lter-jrn.210437036,
            and knb-lter-jrn.210437051 for the NPP G-SUMM met station 30 minute, hourly, and daily summary
            datasets, respectively.     This is an ONGOING dataset.