cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.hwpaeb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Balaena physalus Linnaeus, 1758",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032118-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3636986_d2
title: Additional file 2: of The Arabidopsis phytohormone crosstalk network involves a consecutive metabolic route and circular control units of transcription factors that regulate enzyme-encoding genes

description: XML, XGMML, GML, SIF and NNF format of the identified models in the manuscript. (ZIP 164 kb)
DOI: 10.6084/m9.figshare.c.3636962_d11
title: MOESM10 of RNA-Seq analysis uncovers non-coding small RNA system of Mycobacterium neoaurum in the metabolism of sterols to accumulate steroid intermediates

description: Additional file 10: Table S8. Details of sRNA candidates associated with the genes involved in basic metabolism, cell envelope biosynthesis, efflux pumps, and ATP synthesis in group Mn-9OHAD/CC.
DOI: 10.6084/m9.figshare.c.3636962_d10
title: MOESM9 of RNA-Seq analysis uncovers non-coding small RNA system of Mycobacterium neoaurum in the metabolism of sterols to accumulate steroid intermediates

description: Additional file 9: Table S7. Details of sRNA candidates associated with sterol degradation genes in comparable groups Mn-CC/C, Mn-9OHAD/CC, Mn-ADD/CC, and Mn-BNA/CC
DOI: 10.6084/m9.figshare.c.3636962_d8
title: MOESM4 of RNA-Seq analysis uncovers non-coding small RNA system of Mycobacterium neoaurum in the metabolism of sterols to accumulate steroid intermediates

description: Additional file 4: Table S3. All RPKM values of sRNA candidates in strains Mn-C, Mn-CC, Mn-9OHAD, Mn-ADD, and Mn-BNA and the differential expression of sRNA candidates in comparable groups Mn-CC/C, Mn-9OHAD/CC, Mn-ADD/CC, and Mn-BNA/CC.
DOI: 10.6084/m9.figshare.c.3636962_d9
title: MOESM5 of RNA-Seq analysis uncovers non-coding small RNA system of Mycobacterium neoaurum in the metabolism of sterols to accumulate steroid intermediates

description: Additional file 5: Table S4. Target genes of sRNA candidates in comparable groups Mn-CC/C, Mn-9OHAD/CC, Mn-ADD/CC, and Mn-BNA/CC.
DOI: 10.6084/m9.figshare.c.3636962_d7
title: MOESM7 of RNA-Seq analysis uncovers non-coding small RNA system of Mycobacterium neoaurum in the metabolism of sterols to accumulate steroid intermediates

description: Additional file 7: Table S5. Negative analysis results of sRNA candidates and target genes in comparable groups Mn-CC/C, Mn-9OHAD/CC, Mn-ADD/CC, and Mn-BNA/CC.
DOI: 10.6084/m9.figshare.c.3636962_d5
title: MOESM2 of RNA-Seq analysis uncovers non-coding small RNA system of Mycobacterium neoaurum in the metabolism of sterols to accumulate steroid intermediates

description: Additional file 2: Table S2. Details of sRNA candidates, including location in chromosome, upstream and downstream genes, sequences, secondary structures, alignment results with known database (Rfam).
DOI: 10.6084/m9.figshare.c.3636962_d4
title: MOESM8 of RNA-Seq analysis uncovers non-coding small RNA system of Mycobacterium neoaurum in the metabolism of sterols to accumulate steroid intermediates

description: Additional file 8: Table S6. COG analysis of target genes of sRNA candidates in comparable groups Mn-CC/C, Mn-9OHAD/CC, Mn-ADD/CC, and Mn-BNA/CC.
DOI: 10.6084/m9.figshare.c.3636962_d2
title: MOESM1 of RNA-Seq analysis uncovers non-coding small RNA system of Mycobacterium neoaurum in the metabolism of sterols to accumulate steroid intermediates

description: Additional file 1: Table S1. Novel transcripts found in strains Mn-C, Mn-CC, Mn-9OHAD, Mn-ADD, and Mn-BNA.
DOI: 10.6084/m9.figshare.c.3636962_d1
title: MOESM11 of RNA-Seq analysis uncovers non-coding small RNA system of Mycobacterium neoaurum in the metabolism of sterols to accumulate steroid intermediates

description: Additional file 11: Table S9. Details of functional characterization of potential target genes of sRNA candidates 131 and 138.
DOI: 10.6084/m9.figshare.c.3636929_d6
title: Additional file 2: Table S2. of Combination analysis of genome-wide association and transcriptome sequencing of residual feed intake in quality chickens

description: GO mapping for genes within the 50Â bp flanking regions of the significant RFI-related SNPs. (XLS 31Â kb)
DOI: 10.6084/m9.figshare.c.3636929_d3
title: Additional file 4: Table S3. of Combination analysis of genome-wide association and transcriptome sequencing of residual feed intake in quality chickens

description: Differentially expressed genes identified in RNA sequencing in divergent RFI individuals. (XLS 37Â kb)
DOI: 10.6084/m9.figshare.c.3636929_d2
title: Additional file 5: Table S4. of Combination analysis of genome-wide association and transcriptome sequencing of residual feed intake in quality chickens

description: Networks constructed using the differentially expressed genes predicted by IPA. (XLS 1284Â kb)
DOI: 10.15468/dl.skzt2x
title: Occurrence Download

description: A dataset containing 146369 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is CEDaR Online Recording"
 ]
}

 The dataset includes 146369 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032112-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qhaeem
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stichaeus grigorjewi Herzenstein, 1890",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 59 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032120-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3636791_d23
title: Additional file 16: Table S14. of Exploring the rice dispensable genome using a metagenome-like assembly strategy

description: Sheet 1 shows contigs of the indica dispensable genome that were composed by reads mainly from a subgroup. Sheet 2 shows contigs of the japonica dispensable genome that were composed by reads mainly from a subgroup. Columns 2â  4 show the percentage of reads mapped to the contig that belong to each subgroup. (XLS 1556Â kb)
DOI: 10.15468/2r7dpw
title: EMBRAPA FLORESTAS | Soil macrofauna communities in various land use systems in Canoinhas and Três Barras, Santa Catarina state, Brazil

description: Soil macrofauna communities were evaluated in May 2011 in five land use systems in the region of Canoinhas and Três Barras, Santa Catarina state, Brazil. In Três Barras, samples were taken in a native Atlantic Forest fragment and an Araucaria angustifolia tree plantation in the Três Barras National Forest, as well as in an annual grain crop production system under no-tillage on a private farm. In Canoinhas, samples were taken in an agropastoral system with Italian ryegrass (Lolium multiflorum), and in a permanent pasture of native grasses. Nine samples were taken in each land use system in a 3x3 square grid with 30 m distance between samples. Samples were taken using the standard methodology of the Tropical Soil Biology and Fertility Programme (TSBF), where soil (down to 20 cm depth) and litter fauna were hand-sorted from monoliths of 25x25 cm, and the abundance of a total of 42 taxa was assessed.
DOI: 10.15468/dl.2zrz6q
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pithecia inusta Spix, 1823"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032121-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vuuz9v
title: Occurrence Download

description: A dataset containing 35189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lythrum salicaria L."
 ]
}

 The dataset includes 35189 records from 138 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032119-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3636734_d2
title: Additional file 2: of Influencing factors associated with the mode of birth among childbearing women in Hunan Province: a cross-sectional study in China

description: Dataset of Survey. (XLS 1417Â kb)
DOI: 10.6084/m9.figshare.c.3636707_d6
title: Additional file 9: Table S4. of Genome-wide association mapping reveals novel sources of resistance to northern corn leaf blight in maize

description: SNP loci found to be associated with resistance to NCLB by GWAS using Anderson-Darling test. For the three disease parameters (AUDPC, mean rating and high rating), significant SNPs associated to 2 or 3 disease parameters were listed. (ODS 22 kb)
DOI: 10.6084/m9.figshare.c.3636707_d3
title: Additional file 3: Table S3. of Genome-wide association mapping reveals novel sources of resistance to northern corn leaf blight in maize

description: The proportion of variance explained by ten groups of principal component analyses in association panel. (ODS 12 kb)
DOI: 10.6084/m9.figshare.c.3636707_d2
title: Additional file 1: Table S1. of Genome-wide association mapping reveals novel sources of resistance to northern corn leaf blight in maize

description: The list of the lines and their phenotypic evaluation to NCLB in the association panel. (ODS 58 kb)
DOI: 10.6084/m9.figshare.c.3636707_d1
title: Additional file 2: Table S2. of Genome-wide association mapping reveals novel sources of resistance to northern corn leaf blight in maize

description: The field design of the association mapping panel for evaluation of resistance to NCLB. (ODS 13 kb)
DOI: 10.6084/m9.figshare.c.3636644_d9
title: Additional file 2: Table S1. of ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline

description: Sheet1 ToolsComparison: ChIP-seq pipeline software comparison. Sheet2 Examples of ChiLin report. A summary of example data annotation of transcription factor, chromatin regulatory factor and histone modification ChIP-seq data. Sheet3 Protein classification standard for the 8 categories. Sheet4 Protein classification results. Sheet5 BWA QC Database. ChiLin samples and datasets quality metrics across three layers. A clean up table of cistrome samples and datasets quality metrics for ChiLin usersâ   reference. The QC results is based on the reference of hg38 and mm10 assembly. (XLSX 10363Â kb)
DOI: 10.6084/m9.figshare.c.3636644_d3
title: Additional file 8: File S1. of ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline

description: H3K27me3 data QC report from ChiLin. The sequencing reads had been mapped to the mm10 genome build for BWA and Bowtie. File S2. Second H3K27me3 data QC report from ChiLin. The sequencing reads had been mapped to the hg38 genome build for BWA and Bowtie. File S3. H3K4me3 data QC report from ChiLin. The sequencing reads had been mapped to the mm10 genome build for BWA and Bowtie. File S4. Second H3K4me3 data QC report from ChiLin. The sequencing reads had been mapped to the mm10 genome build for BWA and Bowtie. File S5. H2A.Z data QC report from ChiLin. The sequencing reads had been mapped to the mm10 genome build for BWA and Bowtie. File S6. TRRAP data QC report from ChiLin. The sequencing reads had been mapped to the hg38 genome build for BWA and Bowtie. File S7. FOXA1 data QC report from ChiLin. The sequencing reads had been mapped to the hg38 genome build for BWA and Bowtie. File S8. STAT6 data QC report from ChiLin. The sequencing reads had been mapped to the mm10 genome build for BWA and Bowtie. File S9. AR data QC report from ChiLin. This report includes two immunoprecipitated and two input samples. The sequencing reads had been mapped to the hg38 genome build for BWA and Bowtie. File S10. RAD21 paired end data QC report from ChiLin. The sequencing reads had been mapped to the mm10 genome build for BWA and Bowtie. File S11. RAG2 data QC report from ChiLin. The sequencing reads had been mapped to the mm10 genome build for BWA and Bowtie. File S12. CHD7 data QC report from ChiLin. The sequencing reads had been mapped to the mm10 genome build for BWA and Bowtie. File S13. DNase-seq QC report from ChiLin. The sequencing reads had been mapped to the hg38 genome build for BWA and Bowtie. (GZ 9019Â kb)
DOI: 10.5281/zenodo.14419798
title: EKOLOGIK OMILLARNING KELIB CHIQISH SABABLARI VA QISHLOQ XO'JALIGI IQTISODIYOTIGA SALBIY TA'SIRI.
DOI: 10.5281/zenodo.14419799
title: EKOLOGIK OMILLARNING KELIB CHIQISH SABABLARI VA QISHLOQ XO'JALIGI IQTISODIYOTIGA SALBIY TA'SIRI.
DOI: 10.15468/hm49kv
title: EMBRAPA FLORESTAS | Soil macrofauna communities in various land use systems in Itatinga, São Paulo, Brazil

description: Soil macrofauna communities were evaluated in February 2014 in a number of land use systems in Itatinga, São Paulo state, Brazil. At the University of São Paulo Forestry Department Experimental Station, the following land uses were studied: 1) a mixed Eucalyptus grandis and Acacia mangium tree plantation; 2) an Acacia mangium tree plantation; 3) a Eucalyptus grandis tree plantation; and 4) a semi-deciduous native Atlantic Forest fragment. At a private farm in the Distrito de Lobo, the following land uses were sampled: 1) a mixed Eucalyptus grandis and Acacia mangium tree plantation; 2) an Acacia mangium tree plantation; 3) a Eucalyptus grandis tree plantation; 4) a sugarcane plantation; and 5) a permanent pasture. At the Fazenda Americana of the Duratex Company, a Eucalyptus sp. plantation was sampled on two soil textural types: a sandy clay loam and a clay loam. Samples were taken using the standard methodology of the Tropical Soil Biology and Fertility Programme (TSBF), where soil (down to 20 cm depth) and litter fauna were hand-sorted from monoliths of 25x25 cm, and the abundance of a total of 42 taxa was assessed.
DOI: 10.6084/m9.figshare.c.3636560_d3
title: Additional file 3: of High-throughput sequencing technology to reveal the composition and function of cecal microbiota in Dagu chicken

description: Comparisons for abundance between the 18-w OD and 18-w ID groups at the genus level. (XLS 19Â kb)
DOI: 10.6084/m9.figshare.c.3636521_d10
title: Additional file 1: Table S1. of Identification of mRNA isoform switching in breast cancer

description: Patient characteristics of 728 breast tumors and 91 normal samples of TCGA BRCA dataset. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3636521_d8
title: Additional file 6: Table S5. of Identification of mRNA isoform switching in breast cancer

description: 470 pairs of isoforms with switching events in TCGA BRCA dataset. For each isoform pair, two clusters of samples with differential isoform expression pattern was identified by K-means clustering; and was summarized on the complete data set (K-means cluster sample size (overall)) and on the subset in which both isoforms were detected (K-means cluster sample size (detected)). (XLSX 63 kb)
DOI: 10.6084/m9.figshare.c.3636521_d7
title: Additional file 10: Table S8. of Identification of mRNA isoform switching in breast cancer

description: Significantly differentially expressed genes associated with the ratio of PRICKLE1 uc010skw.1 and uc001rnl.2. 1059 genes were identified by qualitative SAM analysis using a FDR of 0. And four gene signatures are enriched with cancer genes. (XLSX 89 kb)
DOI: 10.6084/m9.figshare.c.3636521_d6
title: Additional file 8: Table S7. of Identification of mRNA isoform switching in breast cancer

description: 229 pairs of isoforms switching events associated with luminal vs. basal subtype. The correlation of isoform expression pattern with luminal vs. basal subtype was identified in the TCGA BRCA dataset, and was tested in comparing two sets of tumor cluster pairs in TCGA PanCan dataset: (a) LUAD and Squamous, (b) Luminal BRCA and Basal BRCA. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3636521_d4
title: Additional file 7: Table S6. of Identification of mRNA isoform switching in breast cancer

description: Functional annotation clustering of 452 genes involved in isoform switching events. Functional annotations clusters are sorted by the overall enrichment score based on the EASE score. Genes associated with annotation terms, EASE score and comparison of terms in the top six clusters are presented. (XLSX 89 kb)
DOI: 10.6084/m9.figshare.c.3636521_d5
title: Additional file 2: Table S2. of Identification of mRNA isoform switching in breast cancer

description: 43 genes with more than 10 expressed and detected transcripts per gene. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3636521_d2
title: Additional file 3: Table S3. of Identification of mRNA isoform switching in breast cancer

description: Functional annotation clustering of 43 genes with complex splicing patterns. Functional annotation clusters are sorted by the overall enrichment score based on the EASE score, a modified Fisher Exact P-value, of annotation terms. Genes associated with each term and the EASE Score are reported. Comparison of annotation terms associated with the top six clusters is coded as the following: Genes associated with specific terms are coded as 1; genes with no involvement are coded as 0. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3636521_d1
title: Additional file 5: Table S4. of Identification of mRNA isoform switching in breast cancer

description: List of 917 isoform switching pairs associated with significant up and down regulation in sample with low RIN scores. (XLSX 86 kb)
DOI: 10.6084/m9.figshare.c.3636455_d2
title: Additional file 2: of Genetic characteristics of soybean resistance to HG type 0 and HG type 1.2.3.5.7 of the cyst nematode analyzed by genome-wide association mapping

description: SNP list of 440 soybean accessions. (ZIP 2495 kb)
DOI: 10.6084/m9.figshare.c.3636332_d6
title: Additional file 3: Figure S3. of Epigenetic associations of type 2 diabetes and BMI in an Arab population

description: Q-Q plots of the EWAS results with (A) BMI (genomic inflation factor = 1.09), and (B) T2D (genomic inflation factor = 1.10). The red line shows the expected p values. 49.7 KB
DOI: 10.15468/dl.53bbms
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dinogunellus grigorjewi (Herzenstein, 1890)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032122-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3636332_d4
title: Additional file 5: of Epigenetic associations of type 2 diabetes and BMI in an Arab population

description: Whole list of T2D associations with CpG methylation sites from the EWAS in the Qatari family sample (provided in csv-separated format). Coordinates are in hg19. 31.2 MB
DOI: 10.6084/m9.figshare.c.3636332_d5
title: Additional file 6: Figure S4. of Epigenetic associations of type 2 diabetes and BMI in an Arab population

description: Distribution of methylation beta value for the Qatari family study (red) and the TwinsUK cohort (blue). While the standardized BMI distribution was not different between the two samples (Kolmogorov-Smirnov p value&gt;0.05), the distribution of six out of eight methylation values at the tested probes were different in either location or shape (Kolmogorov-Smirnov p value&lt;0.05) 309 KB
DOI: 10.6084/m9.figshare.c.3636332_d1
title: Additional file 2: Figure S2. of Epigenetic associations of type 2 diabetes and BMI in an Arab population

description: Manhattan plots for epigenome-wide association of CpG methylation sites with (A) BMI (B) T2D. Coordinates are in hg19. The red line indicates a conservative Bonferroni significance threshold of p value = 1.07 × 10−7. 277 KB
DOI: 10.6084/m9.figshare.c.3636332_d2
title: Additional file 4: of Epigenetic associations of type 2 diabetes and BMI in an Arab population

description: Whole list of BMI associations with CpG methylation sites from the EWAS in the Qatari family sample (provided in csv-separated format). Coordinates are in hg19. 31.5 MB
DOI: 10.6084/m9.figshare.c.3636317_d1
title: Additional file 1: Table S1. of A single dose of the Îł-secretase inhibitor semagacestat alters the cerebrospinal fluid peptidome in humans

description: Identified peptides. Peptides identified and quantified in at least four participants in each of the three treatment groups. Quantitative data are presented as percent change relative to CSF sampled at the time point when the drug was administered. The values are normalized to the average relative peptide abundance in the placebo group for each time point. (XLSX 86Â kb)
DOI: 10.6084/m9.figshare.c.3636125_d1
title: Additional file 1 of Sample size calculation while controlling false discovery rate for differential expression analysis with RNA-sequencing experiments

description: This excel file contains comparison of resulting sample size and power between Li et al.â  s method [18] and our proposed method for simulation 1, with parameter settings from Table 1 in [18]. The results are obtained under m=200, with Liâ  s result in the first row from each parameter setting, and our result in the second row. (XLS 49.2 kb)
DOI: 10.6084/m9.figshare.c.3636113_d16
title: Additional file 12: of Transcriptomic profiles reveal the genome-wide responses of the harmful dinoflagellate Cochlodinium polykrikoides when exposed to the algicide copper sulfate

description: Differentially expressed photosynthesis related genes. The genes were manually summarized by reviewing GO and NR annotation. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3636113_d14
title: Additional file 13: of Transcriptomic profiles reveal the genome-wide responses of the harmful dinoflagellate Cochlodinium polykrikoides when exposed to the algicide copper sulfate

description: Differentially expressed mitochondria related genes. The genes were manually summarized by reviewing GO and NR annotation. â  *â   indicated the controversial genes that present or lost in the dinoflagellate C. polykrikoides. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3636113_d15
title: Additional file 10: of Transcriptomic profiles reveal the genome-wide responses of the harmful dinoflagellate Cochlodinium polykrikoides when exposed to the algicide copper sulfate

description: DEGs that involved in oxidative phosphorylation. The genes were identified by KEGG pathway analysis. â  *â   indicated the controversial genes that present or lost in the dinoflagellate C. polykrikoides. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3636113_d13
title: Additional file 7: of Transcriptomic profiles reveal the genome-wide responses of the harmful dinoflagellate Cochlodinium polykrikoides when exposed to the algicide copper sulfate

description: DEGs that involved in translation. The genes were identified by KEGG pathway analysis. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.c.3636113_d12
title: Additional file 3: of Transcriptomic profiles reveal the genome-wide responses of the harmful dinoflagellate Cochlodinium polykrikoides when exposed to the algicide copper sulfate

description: KEGG pathways of DEGs. The third level pathways of group 1 and group 2 were list in the excel file. Gene numbers indicated the total gene numbers that assigned to each third level pathway. (XLSX 16 kb)