cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7352275
title: Evaluating the role of the nuclear microenvironment in gene function by population-based modeling

description: This repository accompanies the manuscript "<strong>Evaluating the role of the nuclear microenvironment in gene function by population-based modeling</strong>", available in <em>Nature Structural & Molecular Biology</em>. It contains the files for the population of 3D structures for GM12878 in 200-kb resolution generated using IGM (https://github.com/alberlab/igm) and the derived structural features. Please see README.txt for more information. For any inquiries please reach out to Dr. Frank Alber (falber@g.ucla.edu).
DOI: 10.15468/dl.upheh7
title: Occurrence Download

description: A dataset containing 2284 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schiedea Cham. & Schltdl."
 ]
}

 The dataset includes 2284 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002583-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uu7qnh
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Geometry POLYGON((-121.72852 11.69527,-79.36523 11.69527,-79.36523 35.17381,-121.72852 35.17381,-121.72852 11.69527))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Syringodium filiforme Kütz."
 ]
}

 The dataset includes 102 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046755-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z9a22q
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dentex macrophthalmus (Bloch, 1791)",
 "Year 2000-2024"
 ]
}

 The dataset includes 144 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001884-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ftqsnh
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epidendrum pentotis Rchb.f."
 ]
}

 The dataset includes 8 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002583-150912100344238/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d3ehc7
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Malawi",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (ef048156-6927-4ebf-a10c-131aa6a17966, c76cf030-2a95-11da-9cc1-b8a03c50a862, ae447c50-b8a8-11d8-92a4-b8a03c50a862, 90fd6680-349f-11d8-aa2d-b8a03c50a862, 061b4f20-f241-11da-a328-b8a03c50a862, 396d5f30-dea9-11db-8ab4-b8a03c50a862, a344ee9f-f1b7-4761-be2c-58ee6d741395, bc092ff0-02e4-11dc-991f-b8a03c50a862, 28eb1a3f-1c15-4a95-931a-4af90ecb574d, 3dc9105b-6792-4d2f-8872-c60dded8ae20)",
 "TaxonKey is Uapaca kirkiana Müll.Arg."
 ]
}

 The dataset includes 136 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003576-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k2cm7g
title: Occurrence Download

description: A dataset containing 429 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Osmia lignaria Say, 1837",
 "Year 1980-1990"
 ]
}

 The dataset includes 429 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059393-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1cifoy
title: Occurrence Download

description: A dataset containing 859727 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Repatriated is TRUE",
 "Country is Norway"
 ]
}

 The dataset includes 859727 records from 963 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036529-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5u9z9s
title: Occurrence Download

description: A dataset containing 523 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Diplodus annularis (Linnaeus, 1758)",
 "Year 1950-2000"
 ]
}

 The dataset includes 523 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001889-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fxkc4n
title: Occurrence Download

description: A dataset containing 985 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Cnemidophorus cryptus Cole & Dessauer, 1993"
 ]
}

 The dataset includes 985 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184063-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.act8br
title: Occurrence Download

description: A dataset containing 523 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is SC Dolphin Project - Powered by Anecdata.org"
 ]
}

 The dataset includes 523 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001895-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5auckt
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stelis index Luer & R.Escobar"
 ]
}

 The dataset includes 29 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0192421-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zsh8xm
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Juniperus communis var. megistocarpa Fernald & H.St.John"
 ]
}

 The dataset includes 66 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054353-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v0reyi
title: Occurrence Download

description: A dataset containing 232 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ficus palmeri S.Watson"
 ]
}

 The dataset includes 232 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002583-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.47yfdb
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rondeletia naguensis Britton & P.Wilson"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0192422-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6wpadk
title: Occurrence Download

description: A dataset containing 2413 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Charadrius morinellus Linnaeus, 1758"
 ]
}

 The dataset includes 2413 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002606-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ac8crk
title: Occurrence Download

description: A dataset containing 70460 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "Country is United States of America",
 {
 "or" : [
 "Month is February",
 "Month is March",
 "Month is June",
 "Month is July"
 ]
 },
 "TaxonKey is Phainopepla S.F.Baird, 1858"
 ]
}

 The dataset includes 70460 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036538-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7dhvqa
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scolionema suvaense (Agassiz & Mayer, 1899)"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002583-160430102343922/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.82pmdd
title: Occurrence Download

description: A dataset containing 8114 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neriene clathrata (Sundevall, 1830)"
 ]
}

 The dataset includes 8114 records from 210 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059399-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a9qtxg
title: Occurrence Download

description: A dataset containing 2376 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Diplodus cervinus (Lowe, 1838)",
 "Year 2000-2024"
 ]
}

 The dataset includes 2376 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001900-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vbujeq
title: Occurrence Download

description: A dataset containing 402 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rana megapoda Taylor, 1942",
 "Country is Mexico",
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Literature Occurrence"
 ]
 }
 ]
}

 The dataset includes 402 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002583-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gn8947
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nycterididae"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059413-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m6c8er
title: Occurrence Download

description: A dataset containing 7124703 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is one of (EOD – eBird Observation Dataset, iNaturalist Research-grade Observations)",
 "StateProvince is New York",
 "Year 2022-2022"
 ]
}

 The dataset includes 7124703 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005123-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xf5psl
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Capsella grandiflora (Fauché & Chaub.) Boiss."
 ]
}

 The dataset includes 92 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002583-160803222355964/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n7pntp
title: Occurrence Download

description: A dataset containing 287 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is South America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Gelastocoris Kirkaldy, 1897"
 ]
}

 The dataset includes 287 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0334325-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.waehvs
title: Occurrence Download

description: A dataset containing 191 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gonocephalus interruptus Boulenger, 1885"
 ]
}

 The dataset includes 191 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002583-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ywa5nb
title: Occurrence Download

description: A dataset containing 1842 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Afghanistan, Pakistan, India, Nepal, Sri Lanka, Bangladesh)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Senna tora (L.) Roxb."
 ]
}

 The dataset includes 1842 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005122-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x2a16u
title: Occurrence Download

description: A dataset containing 369884 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Aquila chrysaetos (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 369884 records from 245 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005161-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yfqazt
title: Occurrence Download

description: A dataset containing 2815415 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Antigone vipio (Pallas, 1811), Anas acuta Linnaeus, 1758)"
 ]
}

 The dataset includes 2815415 records from 853 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040293-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.busnzg
title: Occurrence Download

description: A dataset containing 1019140 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 1019140 records from 339 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0248779-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ngpjr
title: Occurrence Download

description: A dataset containing 459198 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus robur L."
 ]
}

 The dataset includes 459198 records from 823 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010343-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hj8dw9
title: Occurrence Download

description: A dataset listing the 2224 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((121.93099 24.83295,121.96963 24.83295,121.96963 24.85622,121.93099 24.85622,121.93099 24.83295))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 2224 records were derived from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014888-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.19767952
title: Additional file 6 of Diabetes risk loci-associated pathways are shared across metabolic tissues

description: Additional file 6: Table S5. Enriched KEGG pathways based on T2D SNPs.
DOI: 10.6084/m9.figshare.23967587
title: Characterization of the complete chloroplast genome of <i>Carallia brachiata</i> (Lour.) Merr. (Rhizophoraceae)

description: <i>Carallia brachiata</i> (Lour.) Merr. (1919) is an important medical resource distributed across subtropical Asia. In this study, the complete chloroplast genome of <i>C. brachiata</i> was sequenced, revealing a total length of 162,460 bp, including four regions – a large single copy (89,814 bp), a small single copy (18,804 bp), and a pair of inverted repeats (26,921 bp each). The overall guanine + cytosine content was 35.76%. In total, 130 genes were annotated within the chloroplast genome, comprising 85 protein-coding, 37 tRNA, and 8 rRNA genes. Subsequent phylogenetic analyses revealed that <i>C. brachiata</i> is closely related to <i>Carallia diplopetala</i>.
DOI: 10.6084/m9.figshare.21345747
title: Data of RSPB-2022-1850 from Tree-ring evidence of ecological stress memory

description: A dataset including decline and recovery rate of 499 paried past tree-growth depressions from 368 juniper trees.
DOI: 10.6084/m9.figshare.23967587.v1
title: Characterization of the complete chloroplast genome of <i>Carallia brachiata</i> (Lour.) Merr. (Rhizophoraceae)

description: <i>Carallia brachiata</i> (Lour.) Merr. (1919) is an important medical resource distributed across subtropical Asia. In this study, the complete chloroplast genome of <i>C. brachiata</i> was sequenced, revealing a total length of 162,460 bp, including four regions – a large single copy (89,814 bp), a small single copy (18,804 bp), and a pair of inverted repeats (26,921 bp each). The overall guanine + cytosine content was 35.76%. In total, 130 genes were annotated within the chloroplast genome, comprising 85 protein-coding, 37 tRNA, and 8 rRNA genes. Subsequent phylogenetic analyses revealed that <i>C. brachiata</i> is closely related to <i>Carallia diplopetala</i>.
DOI: 10.6084/m9.figshare.19767947.v1
title: Additional file 2 of Highly potent multivalent VHH antibodies against Chikungunya isolated from an alpaca naïve phage display library

description: Additional file 2: Table S1. 119 binders were screened using a phage ELISA. Table S2. 119 binders were screened using a phage ELISA. Table S3. Properties and expression of multi-valent nanobodies. Table S4. Overlapped peptides covering the CHIKV E2 protein in this study.
DOI: 10.25402/cer.16627531.v1
title: Supplementary Table 1. Off-label antipsychotic use patterns among Texas Medicaid adults 2013–2016

description: Supplementary Table 1: Diagnosis and ICD-9-CM, ICD-10-CM Codes
DOI: 10.6084/m9.figshare.19767943.v1
title: Additional file 3 of Diabetes risk loci-associated pathways are shared across metabolic tissues

description: Additional file 3: Table S2. eQTLs associated with T2D SNPs.
DOI: 10.6084/m9.figshare.19767955
title: Additional file 7 of Diabetes risk loci-associated pathways are shared across metabolic tissues

description: Additional file 7: Table S6. Enriched REACTOME pathways based on T2D SNPs.
DOI: 10.25387/g3.12433559
title: Supplemental Material for Wang et al., 2020

description: Supplemental Materials <br>Figure S1. Scaffold median coverage and GC content in the N. giraulti genome assembly. Scatterplot of median coverages on the x-axis and GC percentages on the y-axis for each N. giraulti scaffold. Red dots represent Ng genome scaffolds, and green triangle represents Ng mtDNA.<br>Figure S2. Workflow of bioinformatic identification of Ng-specific genes compared to Nv.<br>Figure S3. Functional clustering analysis of Ng-specific genes using Blast2GO.<br>Table S1. Top 10 N. giraulti scaffolds covering each of N. vitripennis chromosomes.<br>Data S1. A list 5,147,972 high-quality single nucleotide polymorphisms (SNPs) between the N. giraulti and N. vitripennis genome.<br>Data S2. A list of 42 N. giraulti specific genes.<br>Data S3. A list of 348 single-copy 1:1 orthologs in N. giraulti and eight other arthropod genomes. <br><br>
DOI: 10.6084/m9.figshare.13482381
title: Biodegradation of <i>o</i>-dichlorobenzene by <i>Bacillus cereus</i> DL-1：kinetics, degradation pathway, biodegradability and performance in biotrickling filter

description: -Dichlorobenzene could be mineralized as the sole carbon and energy source by <i>Bacillus cereus</i> DL-1. In this work, Haldane–Andrews and pseudo-first-order models were used to simulate the growth and degradation abilities of the strain. Two possible degradation pathways were identified by GC/MS intermediate and open-loop analysis. The removal efficiency (RE) of biotrickling filter (BTF) could reach 57.86% at the start phase. At the steady phase, the effects of empty bed residence time (EBRT), inlet gas concentration and intake load rate (ILR) on the performance of BTF have highlighted the potential of strain DL-1 for the treatment of <i>o</i>-dichlorobenzene.
DOI: 10.25387/g3.12433559.v1
title: Supplemental Material for Wang et al., 2020

description: Supplemental Materials <br>Figure S1. Scaffold median coverage and GC content in the N. giraulti genome assembly. Scatterplot of median coverages on the x-axis and GC percentages on the y-axis for each N. giraulti scaffold. Red dots represent Ng genome scaffolds, and green triangle represents Ng mtDNA.<br>Figure S2. Workflow of bioinformatic identification of Ng-specific genes compared to Nv.<br>Figure S3. Functional clustering analysis of Ng-specific genes using Blast2GO.<br>Table S1. Top 10 N. giraulti scaffolds covering each of N. vitripennis chromosomes.<br>Data S1. A list 5,147,972 high-quality single nucleotide polymorphisms (SNPs) between the N. giraulti and N. vitripennis genome.<br>Data S2. A list of 42 N. giraulti specific genes.<br>Data S3. A list of 348 single-copy 1:1 orthologs in N. giraulti and eight other arthropod genomes. <br><br>