cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0111483.10fu
title: SH0111483.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive119892.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive119893.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0111484.10fu
title: SH0111484.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.s88gb6
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes lineatopennis",
 "Year is greater than or equal to 1980"
 ]
}

 The dataset includes 36 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077955-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gt7z43
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trillium L.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0170146-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xqjz4k
title: Occurrence Download

description: A dataset containing 40749 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Entolasia Stapf"
 ]
}

 The dataset includes 40749 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184978-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y7bya8
title: Occurrence Download

description: A dataset containing 126 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ctenidium hastile (Mitt.) Lindb."
 ]
}

 The dataset includes 126 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0156152-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3xc752
title: Occurrence Download

description: A dataset listing the 282 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry MULTIPOLYGON(((-90.82626 39.261,-90.82644 39.26117,-90.82704 39.2612,-90.8267 39.2608,-90.82626 39.261)),((-90.81266 39.28558,-90.81337 39.28573,-90.81484 39.28565,-90.81647 39.28531,-90.81771 39.28486,-90.81825 39.28483,-90.8183 39.28015,-90.81797 39.28013,-90.81834 39.26884,-90.8045 39.26856,-90.80458 39.25172,-90.80344 39.2517,-90.80157 39.25182,-90.80044 39.25196,-90.79838 39.25246,-90.79564 39.25345,-90.79543 39.25347,-90.78007 39.25321,-90.77061 39.25291,-90.75623 39.25283,-90.75455 39.25229,-90.75394 39.25223,-90.75174 39.25239,-90.74986 39.25241,-90.75031 39.25291,-90.75058 39.25364,-90.75059 39.25417,-90.75082 39.25473,-90.751 39.25583,-90.75138 39.25682,-90.75163 39.25825,-90.75231 39.26029,-90.75202 39.26142,-90.75252 39.26237,-90.75397 39.26332,-90.75672 39.26673,-90.75882 39.26838,-90.76027 39.26943,-90.76262 39.27181,-90.76552 39.27444,-90.76619 39.27478,-90.76878 39.27622,-90.76998 39.27703,-90.77111 39.27809,-90.7734 39.2806,-90.77429 39.28129,-90.77568 39.28221,-90.77821 39.28438,-90.78326 39.28425,-90.78325 39.28368,-90.79969 39.28362,-90.80905 39.28367,-90.80905 39.2856,-90.80998 39.28524,-90.81106 39.28544,-90.8123 39.28542,-90.81266 39.28558)))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 282 records were derived from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188650-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b2mqxa
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ferdinandusa neblinensis Steyerm."
 ]
}

 The dataset includes 44 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0204464-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.amqxr5
title: Occurrence Download

description: A dataset containing 44222 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alytes obstetricans (Laurenti, 1768)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 44222 records from 1089 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049401-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xtrtba
title: Occurrence Download

description: A dataset containing 1445 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hedysarum L.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 1445 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0171645-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oc6zrm
title: Occurrence Download

description: A dataset containing 491 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brycon henni Eigenmann, 1913"
 ]
}

 The dataset includes 491 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001675-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j8yfbn
title: Occurrence Download

description: A dataset containing 141 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Specimen)",
 "Country is Mexico",
 "TaxonKey is Chiropterotriton ceronorum Parra-Olea, García-Castillo, Rovito, Maisano, Hanken & Wake, 2020",
 "Year 1900-2022"
 ]
}

 The dataset includes 141 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012938-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5g68gd
title: Occurrence Download

description: A dataset containing 323 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pityopsis Nutt.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 323 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0171698-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2b4yw5
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 {
 "or" : [
 "Country is Argentina",
 "Country is Uruguay",
 "Country is Brazil"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "or" : [
 "PublishingOrg is b6f05cf0-43ce-11d9-8439-b8a03c50a862",
 "PublishingOrg is 90fd6680-349f-11d8-aa2d-b8a03c50a862",
 "PublishingOrg is ae447c50-b8a8-11d8-92a4-b8a03c50a862",
 "PublishingOrg is 7a6bdf66-ef5c-4a81-b731-2e328f4881eb",
 "PublishingOrg is f6e2efc9-42a3-47ea-99c6-3eda8d653cc9",
 "PublishingOrg is c47cd3b0-2178-4a4b-87a6-740b482970a9",
 "PublishingOrg is 2437c128-bf8c-4f53-b668-da95fb2e40b7",
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d"
 ]
 },
 "TaxonKey is Sporobolus montevidensis (Arechav.) P.M.Peterson & Saarela"
 ]
}

 The dataset includes 66 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0224646-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t7uwkh
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Merodon ambiguus Brădescu, 1986"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007597-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9wvj88
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Paratenuisentis ambiguus (Van Cleave, 1921))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0204656-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vt72qw
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eugenia tamaensis Steyerm."
 ]
}

 The dataset includes 14 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188662-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bqj8pu
title: Occurrence Download

description: A dataset containing 112 species occurrences available in GBIF matching the query:
{
 "CatalogNumber" : [
 "is 217880"
 ]
}

 The dataset includes 112 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106655-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yunp4k
title: Occurrence Download

description: A dataset containing 541 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ctenidium capillifolium (Mitt.) Broth."
 ]
}

 The dataset includes 541 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0156147-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x9c2vv
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Acella haldemani (Deshayes, 1867)"
 ]
}

 The dataset includes 46 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188664-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t958na
title: Occurrence Download

description: A dataset containing 15531 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Porophyllum Guett."
 ]
}

 The dataset includes 15531 records from 331 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184962-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/yjad5e
title: Intercropping_Mixed_REDN4_20240321_155520.jpg

description: :unav
DOI: 10.57745/ktarlm
title: Pure_tri_TS_REDN4_20240422_155631.jpg

description: :unav
DOI: 10.57745/t8gzwj
title: Intercropping_Mixed_REDN4_20240321_155803_mask.png

description: :unav
DOI: 10.57745/dinevn
title: Intercropping_Mixed_REDN11_20240321_155514.jpg

description: :unav
DOI: 10.57745/b8dz2q
title: Pure_tri_0N_REDN11_20240422_153633.jpg

description: :unav
DOI: 10.57745/w5qyed
title: Pure_tri_TS_REDN4_20240321_153303_mask.png

description: :unav
DOI: 10.57745/h4tmh0
title: Pure_tri_0N_REDN4_20240408_141747_mask.png

description: :unav
DOI: 10.57745/dqkvjs
title: Intercropping_Mixed_REDN4_20240408_150829_mask.png

description: :unav
DOI: 10.57745/0zmf1j
title: Pure_tri_TS_HUAP30_20240321_153101_mask.png

description: :unav
DOI: 10.57745/4dwao9
title: Pure_Faba_REDN4_20240422_163708.jpg

description: :unav
DOI: 10.57745/opr1zr
title: Intercropping_Mixed_HUAP30_20240321_155848_mask.png

description: :unav
DOI: 10.57745/yu0sos
title: Pure_tri_TS_REDN4_20240321_153601.jpg

description: :unav
DOI: 10.57745/iuobgu
title: Pure_Faba_REDN4_20240422_163825_mask.png

description: :unav
DOI: 10.57745/ddyzci
title: Pure_tri_TS_REDN4_20240422_155318.jpg

description: :unav
DOI: 10.57745/wulesj
title: Pure_tri_0N_HUAP30_20240321_143421_mask.png

description: :unav
DOI: 10.6084/m9.figshare.30467210
title: Phenological stages of wheat modulate effects of phosphorus fertilization in plant-soil microbial interactions

description: Future phosphorus (P) fertilizer availability faces challenges due to limited phosphate rock mines and strict quality regulations regarding Cd contents in phosphate rock. In this study, conventional fertilization was partially substituted with meat bone meal (MBM), sludge (S), and the organo-mineral combination of S plus MBM (SMBM), in a wheat agroecosystem.<br><br>Methods<br>We investigated the impact of fertilization treatments and crop phenological stages on P availability, crop yield, and soil microbial responses. Analysis included enzyme activities, microbial biomass, and the composition of bacterial and fungal communities using metabarcoding. Additionally, we estimated functional genes related to the P cycle through qPCR. Crop yield and nutrient content in plants and soil were also determined.<br><br>Results<br>Replacing traditional fertilization with MBM and SMBM maintained crop yield at levels equivalent to conventional fertilization. S and SMBM produced 70% and 40% (respectively) more bioavailable P compared to conventional treatment (Trad). Significant differences between treatments in soil microbial biomass were observed in the flag leaf stage. S increased in 20% total soil microbial biomass compared to Trad. Crop phenology had a stronger impact on bacterial and fungal communities than fertilization treatments. The use of S enhanced microbial biomass and activity. Yield in both MBM and SMBM plots exhibited no statistically significant differences compared to traditional fertilization.<br><br>Conclusion<br>Organo-mineral fertilization emerges as a sustainable strategy for maintaining crop production while improving soil functionality. Our findings emphasize the primary influence of crop phenology on shaping soil microbial communities and influencing microbial biomass and functionality.<br>
DOI: 10.6084/m9.figshare.30467210.v1
title: Phenological stages of wheat modulate effects of phosphorus fertilization in plant-soil microbial interactions

description: Future phosphorus (P) fertilizer availability faces challenges due to limited phosphate rock mines and strict quality regulations regarding Cd contents in phosphate rock. In this study, conventional fertilization was partially substituted with meat bone meal (MBM), sludge (S), and the organo-mineral combination of S plus MBM (SMBM), in a wheat agroecosystem.<br><br>Methods<br>We investigated the impact of fertilization treatments and crop phenological stages on P availability, crop yield, and soil microbial responses. Analysis included enzyme activities, microbial biomass, and the composition of bacterial and fungal communities using metabarcoding. Additionally, we estimated functional genes related to the P cycle through qPCR. Crop yield and nutrient content in plants and soil were also determined.<br><br>Results<br>Replacing traditional fertilization with MBM and SMBM maintained crop yield at levels equivalent to conventional fertilization. S and SMBM produced 70% and 40% (respectively) more bioavailable P compared to conventional treatment (Trad). Significant differences between treatments in soil microbial biomass were observed in the flag leaf stage. S increased in 20% total soil microbial biomass compared to Trad. Crop phenology had a stronger impact on bacterial and fungal communities than fertilization treatments. The use of S enhanced microbial biomass and activity. Yield in both MBM and SMBM plots exhibited no statistically significant differences compared to traditional fertilization.<br><br>Conclusion<br>Organo-mineral fertilization emerges as a sustainable strategy for maintaining crop production while improving soil functionality. Our findings emphasize the primary influence of crop phenology on shaping soil microbial communities and influencing microbial biomass and functionality.<br>
DOI: 10.57745/u51ezm
title: Pure_tri_TS_REDN4_20240321_153232.jpg

description: :unav
DOI: 10.57745/yeopss
title: Pure_Faba_A12_20240321_141809_mask.png

description: :unav
DOI: 10.57745/vivbrv
title: Intercropping_Mixed_REDN11_20240321_160343_mask.png

description: :unav
DOI: 10.6084/m9.figshare.30466403
title: Datas - visual acuity and contrast sensitivity of the Pacific white shrimp, Penaeus vannamei

description: Visual acuity (VA) refers to the ability to distinguish two separate points at a distance and is an important dimension of an animal’s vision. It can be affected by several visual properties, including contrast sensitivity (CS), which represents the ability to detect differences in luminance. Although the Pacific white shrimp <i>Penaeus vannamei</i> is the most bred shrimp species worldwide, little is known about its visual capacities. The aim of this study was to assess its VA and CS using the optokinetic response (OKR) in a rotating drum apparatus. VA was evaluated by presenting moving grey and white striped patterns of increasing angular width: 0 (uniform grey); 0.3; 4.0; 7.8; 11.3; 15.0; 18.0 and 22.5 °, to identify the smallest angle eliciting significant OKR (αmin). We found that αmin was 11.3 °. CS was assessed by presenting moving black and white striped patterns of constant angular width (22.5 °) at varying differences of contrast: 0 (uniform white), 10, 20, 40, 60, 80 and 100 %. The number of OKR increased with contrast, and even a contrast of 10 % elicited more OKR than 0 % contrast, indicating a CS of at least 90 % at this angular width. Further studies are needed to assess their CS to striped patterns of various angular width, to determine their contrast sensitivity function. These findings highlight that <i>P. vannamei</i> possess poor visual capacities, which is in accordance with their dim and turbid aquatic environment, where visibility is reduced.
DOI: 10.6084/m9.figshare.30466403.v1
title: Datas - visual acuity and contrast sensitivity of the Pacific white shrimp, Penaeus vannamei

description: Visual acuity (VA) refers to the ability to distinguish two separate points at a distance and is an important dimension of an animal’s vision. It can be affected by several visual properties, including contrast sensitivity (CS), which represents the ability to detect differences in luminance. Although the Pacific white shrimp <i>Penaeus vannamei</i> is the most bred shrimp species worldwide, little is known about its visual capacities. The aim of this study was to assess its VA and CS using the optokinetic response (OKR) in a rotating drum apparatus. VA was evaluated by presenting moving grey and white striped patterns of increasing angular width: 0 (uniform grey); 0.3; 4.0; 7.8; 11.3; 15.0; 18.0 and 22.5 °, to identify the smallest angle eliciting significant OKR (αmin). We found that αmin was 11.3 °. CS was assessed by presenting moving black and white striped patterns of constant angular width (22.5 °) at varying differences of contrast: 0 (uniform white), 10, 20, 40, 60, 80 and 100 %. The number of OKR increased with contrast, and even a contrast of 10 % elicited more OKR than 0 % contrast, indicating a CS of at least 90 % at this angular width. Further studies are needed to assess their CS to striped patterns of various angular width, to determine their contrast sensitivity function. These findings highlight that <i>P. vannamei</i> possess poor visual capacities, which is in accordance with their dim and turbid aquatic environment, where visibility is reduced.
DOI: 10.57745/4mslw2
title: Pure_tri_TS_HUAP30_20240321_153547.jpg

description: :unav
DOI: 10.57745/9fzwie
title: Pure_Tri_0N_A12_20240321_143716.jpg

description: :unav