cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24144132.v1
title: Additional file 4 of Amyloid fibril proteomics of AD brains reveals modifiers of aggregation and toxicity

description: Additional file 4: Table S2. List of proteins identified in label-free MS analysis of amyloid fibrils isolated from mouse cortices. Proteins identified with a higher abundance in purified fibrils (N = 8) obtained from AppNL-F/NL-F, and AppNL-G-F/NL-G-F, and 5xFAD mouse brains, 6 months age, compared to respective cortex homogenate as input (n = 3 - 4). Average NSAF values for purified fibrils and cortex homogenates for individual proteins were used. Each sheet represents individual mouse genotype, and each row has individual p values using Student’s t test and adjusted p values using Benjamini-Hochberg (BH) correction. Number of proteins with significantly higher levels in AppNL-F/NL-F, and AppNL-G-F/NL-G-F, and 5xFAD brains are 59, 32, and 29, respectively. Experiment = specific data set, Uniprot accession = Uniprot identifier for each protein, ratio = log2 average NSAF values (purified fibrils/homogenate), t test p value = t test p value, Rank = rank ordered proteins based on p value (if p values are identical, higher ratio was listed first). Additional remarks indicate if results (increased abundance in purified fibrils) are statistically significant or not.
DOI: 10.6084/m9.figshare.29093510.v1
title: Supplementary Data: Gate-to-Gate Life-Cycle Assessment of Immiscible CO2-EOR Operation in Heavy Oil Using Real Operation Data

description: This dataset contains the supplementary input parameters and results for the paper "Gate-to-Gate Life-Cycle Assessment of Immiscible CO2-EOR Operation in Heavy Oil Using Real Operation Data." The Excel file provides comprehensive data used to model and analyze greenhouse gas emissions and carbon sequestration from CO2 huff-and-puff operations at the Mervin heavy oil field in Saskatchewan, Canada.The supplementary information includes:Raw operational data from the Mervin field (2012-2022)OPGEE model input parametersCalculated carbon intensity valuesCO2 sequestration ratesMass balance calculationsSensitivity analysis resultsEmission source breakdowns by categoryComparative data with other CO2-EOR studiesThis dataset allows researchers to:Verify the calculations and findings presented in the main paperReproduce the gate-to-gate life-cycle assessment resultsConduct additional analyses or sensitivity testsCompare with other heavy oil CO2-EOR operationsUnderstand the key drivers of carbon intensity in immiscible CO2-EOR operationsThe data demonstrates how CO2 huff-and-puff operations can achieve negative carbon intensity under certain conditions, with detailed time-series information showing how sequestration rates and emissions vary over a decade of operation. This information is valuable for researchers, industry practitioners, and policymakers interested in carbon management strategies in heavy oil production.
DOI: 10.6084/m9.figshare.29135750.v1
title: Designing a National End Stage Kidney Data System Insights from Key Stakeholders Workshops and Surveys.docx

description: The National End Stage Kidney Disease (NESKD) Data System project is a collaborative initiative designed to develop a comprehensive data system that will enhance patient care, streamline clinical practices, and support long-term healthcare planning and research in Ireland.
DOI: 10.6084/m9.figshare.8187206.v3
title: Alignment and tree files of the mitochondria genome

description: Alignment and tree files of the  Camellia genus mitochondria genome
DOI: 10.17632/ycw667nv5f
title: Supplementary data for: Quantitating the Epigenetic Transformation Contributing to Cholesterol Homeostasis Using Gaussian Process

description: Supplementary data for: Quantitating the Epigenetic Transformation Contributing to Cholesterol Homeostasis Using Gaussian Process
DOI: 10.6084/m9.figshare.16967791.v1
title: Does Future Public Servant Identity Enhance Public Service Motivation? A Priming Experiment in Japan

description: This is a file of the data and analysis code used in our paper, "Does Future Public Servant Identity Enhance Public Service Motivation? A Priming Experiment in Japan".
DOI: 10.6084/m9.figshare.24813888.v1
title: Land Use History of Detected CK Sites

description: Land Use History of Detected CK Sites
DOI: 10.6084/m9.figshare.28477904.v1
title: <b>Serum Metabolomic Characteristics of COVID-19 Patients Co-infection with Echovirus</b>

description: Currently, the Omicron variant of the Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) continues to circulate globally. In our multiplex respiratory pathogen detection, we identified numerous instances of co-infection with Echovirus (ECHO) among Coronavirus Disease 2019 (COVID-19) patients, which exacerbated the clinical symptoms of these patients. Such co-infections are likely to impact the subsequent medical treatment. To date, there are no reports on the pathogenic mechanisms related to COVID-19 co-infected with ECHO. Therefore, this study employed the TM Widely-Targeted metabolomics approach to analyze the serum metabolomes of COVID-19 patients with single SARS-CoV-2 infection (COVID-19), COVID-19 patients co-infected with ECHO (COVID-19+ECHO), and healthy individuals (Control) recruited from routine physical examinations during the same period. Concurrent clinical laboratory tests were performed on the patients to reveal the differences in metabolomic characteristics between the COVID-19 patients and the COVID-19+ECHO patients, as well as to explore potential metabolic pathways that may exacerbate disease progression. Our findings indicate that both clinical examination indicators and the pathways enriched by differential metabolites confirm that patients with dual infection exhibit higher inflammatory and immune responses compared to those with single COVID-19 infections. This difference is likely reflected through abnormalities in the glycerophospholipid metabolic pathway, with the metabolite Sn-Glycero-3-Phosphocholine playing a crucial role in this process. Finally, we established a diagnostic model based on logistic regression using five differential metabolites, which accurately differentiates between the dual infection population and the single COVID-19 infection population (AUC = 0.828).
DOI: 10.6084/m9.figshare.7466546.v1
title: Supplementary Material for: A Family with Autosomal Dominant Distal Renal Tubular Acidosis Presents with Atypical Phenotype Caused by a Missence Mutation (R388C) of the Human Kidney Anion Exchanger

description: Hereditary forms of distal renal tubular acidosis (dRTA) are rare and mainly caused by mutations in ATP6V1B1, ATP6V0A4 and SLC4A1. About 20 mutations in SLC4A1 gene have been found that are related to either autosomal dominant (AD) or autosomal recessive dRTA. AD dRTA often manifest as constitutional and can easily be delayed in diagnosis and treatment. A 30-year-old male patient has a history of paroxysmal paralysis for 7 years, presenting with mild hypokalemia, alkalization of urine, normal blood PH value and increased urinary calcium. Patient’s father has similar presentations but never came to the hospital. We find a heterozygous mutation (c.1162C&gt;T, p.Arg388Cys) located in exon 11 of SLC4A1 gene by utilization of next-generation sequencing technology. Both patient and his father carry the same mutation. Highly conserved R388 is located in amphipathic helix 1 of N-terminal of the kAE1 protein, which may cause AD dRTA by changing the conformation of kAE1. Expression studies provide evidence that the mutant kAE1 R388C proteins are impaired in trafficking to the cell surface.
DOI: 10.17632/k84w77sksz
title: A detailed inquiry of the differences between headphones and loudspeakers influences on dynamic postural task performance

description: This study examined the impact of sound variations and audio delivery methods on decision-making during a dynamic balance task. Twenty-four young adults (14 females, aged 24-31) wore an HTC Vive headset and avoided a virtual ball based on visual cues. We manipulated the environment by introducing congruent (sounds coincide with the visual rule) or incongruent (sounds may or may not coincide with the visual rule) and comparing multimodal (visual and congruent sounds) to unimodal (visual or congruent sounds only) stimuli presentation. Four audio delivery methods were tested: loudspeakers, headphones, passthrough, and room simulation. We quantified reaction time (RT) and accuracy (choosing the correct direction to move) from the head movement. 
Two files are attached: the kinematics dataset (head movement, RT and accuracy per condition) and the demographics dataset.
DOI: 10.6084/m9.figshare.22713604.v1
title: Metadata extracted from the Scopus database, which is used to study the most impactful countries, authors, organisations, keywords in F1000Research.

description: Database extracted from the Scopus database to study F1000Research journey since its inception.
DOI: 10.6084/m9.figshare.24798993.v1
title: Geolife

description: Geolife data from the paper 'A Deep Spatiotemporal Trajectory Representation Learning Framework for Clustering'
DOI: 10.6084/m9.figshare.25243009.v8
title: European Mountain Territory and Value Chains: Knowledge Graphs, CSV, HTML, and Excel Data

description: This repository contains a collection of data about 454 value chains from 23 rural European areas of 16 countries. This data is obtained through a semi-automatic workflow that transforms raw textual data from an unstructured MS Excel sheet into semantic knowledge graphs.In particular, the repository contains:MS Excel sheet containing different value chains details provided by MOuntain Valorisation through INterconnectedness and Green growth (MOVING) European project;454 CSV files containing events, titles, entities and coordinates of narratives of each value chain, obtained by pre-processing the MS Excel sheet454 Web Ontology Language (OWL) files. This collection of files is the result of the semi-automatic workflow, and is organized as a semantic knowledge graph of narratives, where each narrative is a sub-graph explaining one among the 454 value chains and its territory aspects. The knowledge graph is based on the Narrative Ontology, an ontology developed by Institute of Information Science and Technologies (ISTI-CNR) as an extension of CIDOC CRM, FRBRoo, and OWL Time.Two CSV files that compile all the possible available information extracted from 454 Web Ontology Language (OWL) files.GeoPackage files with the geographic coordinates related to the narratives.The HTML files that show all the different SPARQL and GeoSPARQL queries.The HTML files that show the story maps about the 454 value chains.An image showing how the various components of the dataset interact with each other.<br>
DOI: 10.6084/m9.figshare.27247158.v1
title: Datasets for "A chromosomal-level genome assembly of <i>Begonia fimbristipula</i> (Begoniaceae)"

description: This species is native to southeastern China, including Zhejiang, Jiangxi, Hunan, Fujian, Guangdong, Guangxi, Hainan, and Hong Kong. It holds significant economic value as both a medicinal and food source. However, it is under threat due to climate change and human activities, particularly the local preference for using it to make tea.
DOI: 10.6084/m9.figshare.28594784.v1
title: Supplementary Material for: To seal or restore occlusal caries in permanent molar teeth, 11-year RCT

description: Introduction: Sealing of occlusal dentin caries has shown promise in studies, but long-term outcomes remain inconclusive. This RCT aimed to investigate the potential of postponing restorative interventions of manifest occlusal caries by sealing. Methods: After randomization (ratio 2:1), 341 resin sealings and 152 composite restorations in 493 patients (6–17 years) were performed by 66 dentists in nine Danish municipalities. All lesions were pre-designated to require restorative treatment by the treating dentists. The treatments were controlled annually both clinically and radiographically. The primary objectives, assessed at different observation intervals, were to analyze the survival of sealing until replacement by restoration, the survival of sealing and restoration until retreatment, caries progression beneath sealing and restoration, and the longevity of repaired versus unrepaired sealing until replacement by restoration. The secondary objectives identified factors influencing survival of sealings and restorations. Chi-square/Kaplan-Meier/Cox-regression were used for statistical analyses. Results: After 11 years, dropout rate was 10%, and 22% of sealings were repaired/renewed. 58% of sealings and 81% of restorations remained sealed/restored until completion due to age 18 or primary caries. Additionally, 33% of sealings were replaced by restorations, and 12% of restorations were repaired/replaced (p-values&lt;0.001). No endodontics were performed. The mean annual failure rates were 4%–7% for sealings and 1% for restorations. The survival of sealings were affected by various predictor variables across the outcomes and observation intervals. The survival rate of repaired/renewed sealings was comparable to that of new sealings (p=0.96). Conclusions: This long-term study provided a comprehensive overview regarding reasons and time for retreatments of occlusal sealings and restorations. The results indicate that sealing is an effective treatment for occlusal enamel and dentin caries.
DOI: 10.6084/m9.figshare.28936931.v2
title: Thematic and group-focused participatory budgets in Poland (2014-2024)

description: The database includes data on the implementations of thematic and group-focused participatory budgets introduced by Polish municipalities in the years 2014–2024. The dataset includes also some preliminary data for the first qurarter of the year 2025.
DOI: 10.6084/m9.figshare.7998173.v1
title: Aust Fooptprint

description: Footprint found at Aust Cliff.<br><br>Data includes:<br><br>Photos for photogrammetric reconstructionPhotogrammetric 3D modelCT slice data (cropped from a larger dataset)STL constructed from CT Slice data.Supplemental Figure S1, comparison of CT and photogrammetric data<br>This data is associated with the following publication:N.R. Larkin, et al. The first tetrapod track recorded from the rhaetian in the British Isles. Proc. Geol. Assoc. (2020) https://doi.org/10.1016/j.pgeola.2020.07.012<br>
DOI: 10.6084/m9.figshare.8117840.v1
title: New supplemtary tables from Sexual selection drives the evolution of male wing interference patterns

description: A list of full statistical models for wing data
DOI: 10.17028/rd.lboro.6969710.v1
title: 50uL Mould FDM

description: Mould for the creation of tissue engineered skeletal muscle in 50uL construct volumes. To be 3D printed via fused deposition modelling (FDM).
DOI: 10.17632/mwgjj6xszj
title: BMCRN_DN_OI-Table file 2

description: Table file 2 Normalised signal values from arrays in this study
DOI: 10.17632/nxcd8krdhg
title: Diabetic Retinopathy

description: The dataset consists of color fundus images categorized into five Diabetic Retinopathy (DR) severity levels. The No_DR category, with 1,805 images, represents healthy retinal scans without any signs of DR. The Mild category includes 370 images, showing early signs of microaneurysms, the initial indicators of DR. The Moderate class, comprising 999 images, exhibits more prominent abnormalities such as hemorrhages and exudates, indicating disease progression. The Severe category, with 193 images, contains advanced DR cases with widespread hemorrhages, venous beading, and intraretinal microvascular abnormalities. Finally, the Proliferative_DR class, with 295 images, represents the most severe stage, characterized by neovascularization and an increased risk of vision loss.
DOI: 10.6084/m9.figshare.1228508.v14
title: pytnt test data

description: Data files for the pytnt unit tests
DOI: 10.6084/m9.figshare.19949003.v1
title: GSE84465

description: 4 human glioblastoma tumors
DOI: 10.6084/m9.figshare.7628813.v1
title: LC Method 2 (reversed-phase) accurate mass retention time (AMRT) database

description: AMRT database generated from IROA Technology MS metabolite library of standards (Sigma-Aldrich, UK) by LC Method 2. <br><br>LC conditions are stated at the beginning of the database.<br>QTOF-MS acquisition parameters are provided in a separate file within this collection.<br>
DOI: 10.17632/9x96vxp2cs
title: Skin Pain Characteristics in Psoriasis and Psoriatic Arthritis: A Cross-Sectional Study

description: Supplementary materials for manuscript entitled "Skin Pain Characteristics in Psoriasis and Psoriatic Arthritis: A Cross-Sectional Study".
DOI: 10.17632/fh2mg5nmkp
title: فصلنامه مطالعات نوین بانکی -پذیرش مقالات در زمینه علوم اقتصادی و علوم بانکی-سردبیر: دکتر بهنام اسدی

description: مجله مطالعات نوین بانکی در قالب فصلنامه در زمینه پذیرش و چاپ مقالات رشته علوم بانکی و بانکداری اسلامی فعالیت خود را از سال 1397 در گستره فراملی و سراسری شروع کرده است این فصلنامه با رویکردی پژوهشی و تحقیقاتی با انتشار مطالب علمی با سردبیری دکتر بهنام اسدی به جرگه فصلنامه های علمی کشور پیوست است و آنچه که در تولید این نشریه مد نظر می باشد انتخاب موضوعات مختلف در رشته بانکداری اسلامی را تشکیل می دهد. این فصلنامه تلاش می کند بر خلاف بیشتر نشریات تخصصی دیگر ، به حوزه تخصصی خود به صورتی خاص و با نگاهی که مورد استفاده مردم است توجه کند . وجه تخصصی نشریه در راستای پذیرش مقالات مرتبط با علوم بانکی و بانکداری اسلامی و علوم اقتصادی می باشد که پژوهشگران و محققین می توانند جهت ارسال مقالات خود و چاپ در مجله، فایل word مقاله را به همراه شماره تماس به آدرس ایمیل فصلنامه به آدرسBanki1397@yahoo.com ارسال نمایند. اعضای هیات تحریریه فصلنامه: دکتر بهنام اسدی(دبیر علمی فصلنامه و استاد دانشگاه) دکتر سعید خردمندی (عضو هیات علمی دانشگاه آزاد اسلامی) دکتر علی عباس حیاتی(عضو هیات علمی دانشگاه رازی) دکتر بابک وثوقی فرد (عضو هیات علمی دانشگاه آزاد اسلامی) دکتر میرحیدر میرنقی زاده(مدرس دانشگاه و قاضی دادگستری) دکتر افسانه مراد زاده رامی (عضو هیات علمی دانشگاه آزاد اسلامی) دکتر پریسا گنجی
DOI: 10.6084/m9.figshare.19394723.v1
title: Reference files for TE analysis (v1.1)

description: README - Transposable Element Differential Expression Analysis Protocol from RNA-seq Data###########################<br>Supplied reference files<br>- Reference genome sequence, predicted RNA sequences and genome annotations (GCA_014300015.1; 2020 genome) These files are publicly available at: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA599375/ GCA_014300015.1_MPIA_NFZ_2.0_genomic.fna GCA_014300015.1_MPIA_NFZ_2.0_genomic.gtf GCA_014300015.1_MPIA_NFZ_2.0_rna_from_genomic.fna<br>- FishTEDB sequences for N. furzeri transposons This file can be obtained at: http://www.fishtedb.org/project/species-detail?species=Nothobranchius+furzeri Nothobranchius_furzeri_FishTEDB_TEs.fa<br>- Modified reference files including TE sequences/annotations for * kallisto/transcriptome based method: GCA_014300015.1_MPIA_NFZ_2.0_rna_from_genomic_WithFishTEDBv4.fasta<br> * STAR/genome based method: GCA_014300015.1_MPIA_NFZ_2.0_genomic.fna.masked GCA_014300015.1_MPIA_NFZ_2.0_gene_and_RepeatMasker_FishTEDB_annotations.gtf GCA_014300015.1_MPIA_NFZ_2.0_genomic.fna.out
DOI: 10.6084/m9.figshare.20941657.v2
title: RADAR data

description: RADAR data for analysis without baseline
DOI: 10.6084/m9.figshare.24899952.v1
title: Curated Dataset - Phishing Email

description: We have curated 7 repositories.The Ling and Enron datasets possess just two features: ‘Subject’ and ‘Body’. The other datasets consists of six features, namely ‘Sender’, ‘Receiver’, ‘Date’, ‘Subject’, ‘Body’, and ‘Urls’.
DOI: 10.6084/m9.figshare.28463939.v1
title: Naturalized alien plants experience less negative soil-legacy effects and gain competitive advantages through spatial heterogeneity

description: The file includes the data, code and readme file of the paper "Naturalized alien plants experience less negative soil-legacy effects and gain competitive advantages through spatial heterogeneity" by Duo Chen and Mark van Kleunen.
DOI: 10.6084/m9.figshare.28471922.v1
title: Results

description: The results of computational experiments for the Multi-Skilled Resource Constrained Multi-Project Scheduling and Routing Problem study are provided.The experiments were conducted on the Gadi supercomputer at Australia's National Computational Infrastructure (NCI), utilizing a single core of an Intel Xeon Platinum 8274 (Cascade Lake) 3.2 GHz processor and 4 GB of RAM, which are the standard resource allocations on the NCI system. IBM's CPLEX 22.1.1 was used as a solver.
DOI: 10.6084/m9.figshare.28695140.v1
title: A Mechanical Route for Cooperative Transport in Autonomous Robotic Swarms

description: Data used to generate figures found in the manuscript (arranged by ./Fig#/panel)
DOI: 10.6084/m9.figshare.6406859.v1
title: Gurgaon.xlsx

description: This is a list of all the builders in Gurgaon (India), with their email addresses, name of the directors of the company.
DOI: 10.6084/m9.figshare.14842965.v1
title: Global input datasets of fertilization, irrigation, and tillage practices

description: <b>Global input datasets of fertilization, irrigation, and tillage practices</b> <b> </b> <b>Citation:</b> Cui, X.; <b>Zhou, F.</b>*; Ciais, P.; Davidson, E. A.; Tubiello, F. N.; Niu, X.; Ju, X.; Canadell, J. G.; Bouwman, A. F.; Jackson, R. B.; Mueller, N. D.; Zheng, X.; Kanter, D.; Tian, H.; Adalibieke, W.; Bo, Y.; Wang, Q.; Zhan, X.; Zhu, D., Global hotspots of nitrous oxide mitigation potential in cropland. <i>Nature Food</i>. 2021, https://doi.org/10.1038/s43016-021-00384-9<br> <b> </b> <b>Contact:</b> Direct questions, additional information regarding publications and research by email to zhouf@pku.edu.cn. <b><br> Data Products:</b> 1. We provided a global gridded, crop-specific fertilization dataset at 5-arc-minute spatial resolution, including the rate, type, frequency, and placement of N inputs in 2000. 2. We downloaded the global gridded crop-specific non-tillage dataset at 5-arc-minute spatial resolution from Porwollik et al, but aggregated the results for other crops. 3. We downloaded the global gridded crop-specific irrigated area dataset at 5-arc-minute spatial resolution from MIRCA2000, but further divided the irrigated rice into either continuously or intermittently flooded systems. <b>License:</b> Creative Commons Attribution 4.0 International Data may be freely downloaded for research, study, or teaching, but must be cited appropriately. Re-release of the data, or incorporation of the data into a commercial product, is allowed only with explicit permission. If you would like to request permission to use this dataset for another purpose, please contact us at zhouf@pku.edu.cn.
DOI: 10.6084/m9.figshare.22046489.v2
title: 1 km conservation tillage practices dataset across Chinese croplands from 2016 to 2020

description: The dataset provides yearly 1km-grid conservation tillage practices across Chinese croplands from 2016 to 2020. <br> *** The data file is in '.tif' format. <br> *** XY Coordinate System: GCS_WGS_1984 <br> *** The pixel value represents: 0 for non-cropland, 1 for conservation tillage, and 2 for conventional tillage. <br>
DOI: 10.6084/m9.figshare.26183108.v2
title: Ocean environmental sample set

description: Benchmarking of various genome decontamination tools on an oceanic environmental dataset of Single-cell Amplified Genomes (SAGs) from Breube et al. (2018)
DOI: 10.6084/m9.figshare.3528386.v1
title: Appendix A. Analytical derivations of the effects of cannibalism and enrichment on the invasion conditions of the predator and prey.

description: Analytical derivations of the effects of cannibalism and enrichment on the invasion conditions of the predator and prey.
DOI: 10.6084/m9.figshare.92584.v1
title: Son exome files

description: The Fastq files represent the raw exome data for the son. The BAM files are derived from the fastq files by aligning the reads using a Burrows-Wheeler Aligner (BWA). The BAM file (.bam) is the binary version of a tab-delimited text file that contains sequence alignment data. The BAM file index (.bai) provides fast random access to the BAM file. The compressed VCF file (.vcf.gz) describes variant calls of the data in text format.