cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.1710733
title: brightfieldBigPatchSwarmingImaging_npr-1_rep8_part1

description: This experiment is part of the Bright field big patch swarming imaging dataset for the following publication: https://www.biorxiv.org/content/early/2018/11/01/398370


	<strong>strain</strong> : DA609
	<strong>timestamp</strong> : 20180611
	<strong>strain_description</strong> : DA609: npr-1(ad609)X.
	<strong>sex</strong> : hermaphrodite
	<strong>stage</strong> : adult
	<strong>media</strong> : NGM agar low peptone
	<strong>arena</strong> :
	
		<strong>style</strong> : petri
		<strong>size</strong> : 35
	
	
	<strong>food</strong> : OP50, diluted OD = 0.38, inoculated overnight at room temperature
	<strong>who</strong> : S. Serena Ding
	<strong>protocol</strong> : Method in Ding, Schumacher et al. doi.org/10.1101/398370. Alternatively, visit dx.doi.org/10.17504/protocols.io.vyhe7t6.
	<strong>lab</strong> :
	
		<strong>name</strong> : Behavioural Genomics
		<strong>location</strong> : London, United Kingdom
	
	
	<strong>software</strong> :
	
		<strong>name</strong> : tierpsy (https://github.com/ver228/tierpsy-tracker)
	
	
	<strong>days_of_adulthood</strong> : 1
	<strong>total time (s)</strong> : 3600 per file
	<strong>frames per second</strong> : 25
	<strong>video micrometers per pixel</strong> : 10
DOI: 10.6073/pasta/7c1011d347bb34226999aae762b01ea4
title: Santa Barbara Channel Marine BON: Nearshore kelp forest integrated benthic cover, 1980-2016

description: The Santa Barbara Channel Marine Biodiversity Observation Network
  (SBCMBON) tracks long-term patterns in species abundance and
  diversity. This dataset contains cover of kelp forest sessile
  invertebrates, understory macroalgae, and substrate types by
  integrating data from four contributing projects working in the kelp
  forests of the Santa Barbara Channel, USA. Divers collect data on
  using either uniform point contact (UPC) or random point contact (RPC)
  methods.

      
  The four contributing projects are two research projects: The Santa
  Barbara Coastal LTER (SBC LTER) and the Partnership for
  Interdisciplinary Studies of Coastal Oceans (PISCO), the kelp forest
  monitoring program of the Santa Barbara Channel National Park, and the
  San Nicolas Island monitoring program supported by USGS. Together,
  these projects have recorded data for more than 200 species at
  approximately 100 sites on both the mainland coast and on the Santa
  Barbara Channel Islands. Sampling began in 1982 and is ongoing. Data
  were collected by human observation (divers using SCUBA) during
  regular surveys.

      
  Percent cover is recorded for taxa where individuals cannot be
  counted. Cover can be calculated from the data here as the fraction of
  total points at which the taxon was present x 100. With UPC and RPC
  methods, multiple species can be recorded at any given point. The
  total percent cover of all species combined using this method can
  exceed 100%; however, the percent cover of any single species cannot
  exceed 100%. See Methods for information on integration and data
  processing.

      
  MBON is funded by National Aeronautics and Space Administration
  (NASA), Bureau of Ocean Energy Management (BOEM), and National Oceanic
  and Atmospheric Administration (NOAA).

      
  For users who are interested in using all or part of this integrated
  datasets, please contact data owners to discuss your research
  interests, data-related issues or any other questions. A recommended
  citation for the data package is available from the download page. In
  addition, any manuscript generated using this dataset is expected to
  be sent to the data owners before publication so we can be sure the
  data is used in the proper context and methods are reported
  accurately:

      
  Santa Barbara Coastal LTER (LTER):

      
  Dan Reed dan.reed@lifesci.ucsb.edu

      
  Robert Miller miller@msi.ucsb.edu

      
  Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO):

      
  Kelp forest monitoring (KFM):

      
  David Kushner david_kushner@nps.gov

      
  Joshua Sprague joshua_sprague@nps.gov

      
  San Nicolas Island monitoring (SNI):

      
  Kevin Lafferty Klafferty@usgs.gov

      
  Mike Kenner mkenner@ucsc.edu
DOI: 10.6073/pasta/e4580fad684d46d6c8503f25db7d36b4
title: Atmospheric deposition chemistry data from dryfall at Jornada LTER: 1983-2017

description: Atmospheric deposition as found in dryfall (dust) and wetfall
  precipitation has been collected and analyzed since 1983 using an
  Aerochem Metrics wetfall/dryfall collector located at the Jornada LTER
  weather station north of Las Cruces, NM, USA.

      
  Dryfall occurring as atmospheric fallout is collected monthly. Each
  sample is analyzed for Br, Ca, Cl, F, HPO4, K, Mg, Na, NH4, NO3/NO2,
  SO4, Total N, and Total P. Analysis of Sr and Dissolved Organic
  Nitrogen was discontinued in 2003.

      
  Wetfall data are available as a separate data package.
DOI: 10.5281/zenodo.1710794
title: brightfieldBigPatchSwarmingImaging_npr-1_rep8_part2

description: This experiment is part of the Bright field big patch swarming imaging dataset for the following publication: https://www.biorxiv.org/content/early/2018/11/01/398370


	<strong>strain</strong> : DA609
	<strong>timestamp</strong> : 20180611
	<strong>strain_description</strong> : DA609: npr-1(ad609)X.
	<strong>sex</strong> : hermaphrodite
	<strong>stage</strong> : adult
	<strong>media</strong> : NGM agar low peptone
	<strong>arena</strong> :
	
		<strong>style</strong> : petri
		<strong>size</strong> : 35
	
	
	<strong>food</strong> : OP50, diluted OD = 0.38, inoculated overnight at room temperature
	<strong>who</strong> : S. Serena Ding
	<strong>protocol</strong> : Method in Ding, Schumacher et al. doi.org/10.1101/398370. Alternatively, visit dx.doi.org/10.17504/protocols.io.vyhe7t6.
	<strong>lab</strong> :
	
		<strong>name</strong> : Behavioural Genomics
		<strong>location</strong> : London, United Kingdom
	
	
	<strong>software</strong> :
	
		<strong>name</strong> : tierpsy (https://github.com/ver228/tierpsy-tracker)
	
	
	<strong>days_of_adulthood</strong> : 1
	<strong>total time (s)</strong> : 3600 per file
	<strong>frames per second</strong> : 25
	<strong>video micrometers per pixel</strong> : 10
DOI: 10.5281/zenodo.1710795
title: brightfieldBigPatchSwarmingImaging_npr-1_rep8_part2

description: This experiment is part of the Bright field big patch swarming imaging dataset for the following publication: https://www.biorxiv.org/content/early/2018/11/01/398370


	<strong>strain</strong> : DA609
	<strong>timestamp</strong> : 20180611
	<strong>strain_description</strong> : DA609: npr-1(ad609)X.
	<strong>sex</strong> : hermaphrodite
	<strong>stage</strong> : adult
	<strong>media</strong> : NGM agar low peptone
	<strong>arena</strong> :
	
		<strong>style</strong> : petri
		<strong>size</strong> : 35
	
	
	<strong>food</strong> : OP50, diluted OD = 0.38, inoculated overnight at room temperature
	<strong>who</strong> : S. Serena Ding
	<strong>protocol</strong> : Method in Ding, Schumacher et al. doi.org/10.1101/398370. Alternatively, visit dx.doi.org/10.17504/protocols.io.vyhe7t6.
	<strong>lab</strong> :
	
		<strong>name</strong> : Behavioural Genomics
		<strong>location</strong> : London, United Kingdom
	
	
	<strong>software</strong> :
	
		<strong>name</strong> : tierpsy (https://github.com/ver228/tierpsy-tracker)
	
	
	<strong>days_of_adulthood</strong> : 1
	<strong>total time (s)</strong> : 3600 per file
	<strong>frames per second</strong> : 25
	<strong>video micrometers per pixel</strong> : 10
DOI: 10.5281/zenodo.1710896
title: brightfieldBigPatchSwarmingImaging_npr-1_rep8_part3

description: This experiment is part of the Bright field big patch swarming imaging dataset for the following publication: https://www.biorxiv.org/content/early/2018/11/01/398370


	<strong>strain</strong> : DA609
	<strong>timestamp</strong> : 20180611
	<strong>strain_description</strong> : DA609: npr-1(ad609)X.
	<strong>sex</strong> : hermaphrodite
	<strong>stage</strong> : adult
	<strong>media</strong> : NGM agar low peptone
	<strong>arena</strong> :
	
		<strong>style</strong> : petri
		<strong>size</strong> : 35
	
	
	<strong>food</strong> : OP50, diluted OD = 0.38, inoculated overnight at room temperature
	<strong>who</strong> : S. Serena Ding
	<strong>protocol</strong> : Method in Ding, Schumacher et al. doi.org/10.1101/398370. Alternatively, visit dx.doi.org/10.17504/protocols.io.vyhe7t6.
	<strong>lab</strong> :
	
		<strong>name</strong> : Behavioural Genomics
		<strong>location</strong> : London, United Kingdom
	
	
	<strong>software</strong> :
	
		<strong>name</strong> : tierpsy (https://github.com/ver228/tierpsy-tracker)
	
	
	<strong>days_of_adulthood</strong> : 1
	<strong>total time (s)</strong> : 3600 per file
	<strong>frames per second</strong> : 25
	<strong>video micrometers per pixel</strong> : 10
DOI: 10.5281/zenodo.1710897
title: brightfieldBigPatchSwarmingImaging_npr-1_rep8_part3

description: This experiment is part of the Bright field big patch swarming imaging dataset for the following publication: https://www.biorxiv.org/content/early/2018/11/01/398370


	<strong>strain</strong> : DA609
	<strong>timestamp</strong> : 20180611
	<strong>strain_description</strong> : DA609: npr-1(ad609)X.
	<strong>sex</strong> : hermaphrodite
	<strong>stage</strong> : adult
	<strong>media</strong> : NGM agar low peptone
	<strong>arena</strong> :
	
		<strong>style</strong> : petri
		<strong>size</strong> : 35
	
	
	<strong>food</strong> : OP50, diluted OD = 0.38, inoculated overnight at room temperature
	<strong>who</strong> : S. Serena Ding
	<strong>protocol</strong> : Method in Ding, Schumacher et al. doi.org/10.1101/398370. Alternatively, visit dx.doi.org/10.17504/protocols.io.vyhe7t6.
	<strong>lab</strong> :
	
		<strong>name</strong> : Behavioural Genomics
		<strong>location</strong> : London, United Kingdom
	
	
	<strong>software</strong> :
	
		<strong>name</strong> : tierpsy (https://github.com/ver228/tierpsy-tracker)
	
	
	<strong>days_of_adulthood</strong> : 1
	<strong>total time (s)</strong> : 3600 per file
	<strong>frames per second</strong> : 25
	<strong>video micrometers per pixel</strong> : 10
DOI: 10.5517/ccdc.csd.cc1n67bf
title: CCDC 1525334: Experimental Crystal Structure Determination

description: Related Article: Qiang Cheng, Hui-Jun Zhang, Wen-Jun Yue, and Shu-Li You|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6073/pasta/9cfd06952c5266dd5a7691498cc24ce8
title: Santa Barbara Channel Marine BON: Nearshore kelp forest integrated taxa, 1980-2016

description: The Santa Barbara Channel Marine Biodiversity Network (SBC MBON)
  tracks long-term patterns in species abundance and diversity.  By
  integrating research and monitoring efforts (both existing and de novo
  data), we provide a comprehensive view of biodiversity in the region.

      
  This dataset is a combined species list from four datasets currently
  handled and integrated by SBC MBON, with identifiers from an
  appropriate taxonomic registry included for each taxon.  Because this
  species list reflects the integration of multiple collections, it will
  be updated as SBC MBON integration efforts develop.

      
  Santa Barbara Channel Marine BON: Integrated kelp forest/reef: Fish
  https://portal.edirepository.org/nis/mapbrowse?scope=edi&identifier=5&revision=newest

      
  Santa Barbara Channel Marine BON: Integrated kelp forest/reef: Quad
  and swath cover
  https://portal.edirepository.org/nis/mapbrowse?scope=edi&identifier=6&revision=newest

      
  Santa Barbara Channel Marine BON: Integrated kelp forest/reef: Benthic
  cover

      
  https://portal.edirepository.org/nis/mapbrowse?scope=edi&identifier=3&revision=newest

      
  As of 2018, this dataset contains approximately 400 taxa from combined
  observations beginning in 1980. Data include codes for the originating
  project and sampling method, plus basic taxonomic lineage.

      
  MBON is funded by National Aeronautics and Space Administration
  (NASA), Bureau of Ocean Energy Management (BOEM), and National Oceanic
  and Atmospheric Administration (NOAA).

      
  For users who are interested in using all or part of this integrated
  datasets, please contact data owners to discuss your research
  interests, data-related issues or any other questions. A recommended
  citation for the data package is available from the download page. In
  addition, any manuscript generated using this dataset is expected to
  be sent to the data owners before publication so we can be sure the
  data is used in the proper context and methods are reported
  accurately:

      
  Santa Barbara Coastal LTER (LTER):

      
  Dan Reed dan.reed@lifesci.ucsb.edu

      
  Robert Miller miller@msi.ucsb.edu

      
  Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO):

      
  Jenn Caselle caselle@ucsb.edu

      
  Kelp forest monitoring (KFM):

      
  David Kushner david_kushner@nps.gov

      
  Joshua Sprague joshua_sprague@nps.gov

      
  San Nicolas Island monitoring (SNI):

      
  Kevin Lafferty Klafferty@usgs.gov

      
  Mike Kenner mkenner@ucsc.edu
DOI: 10.6073/pasta/e8311bb20bb7f29124387f7ca1078757
title: Atmospheric deposition chemistry data from wetfall precipitation at Jornada LTER: 1983-2017

description: Atmospheric deposition as found in dryfall (dust) and wetfall
  precipitation has been collected and analyzed since 1983 using an
  Aerochem Metrics wetfall/dryfall collector located at the Jornada LTER
  weather station north of Las Cruces, NM, USA.

      
  Wetfall occurring as precipitation is collected after each event with
  a sample size large enough to analyze. Each sample is analyzed for Br,
  Ca, Cl, F, HPO4, K, Mg, Na, NH4, NO3/NO2, SO4, Total N, and Total P.
  Analysis of Sr and Dissolved Organic Nitrogen was discontinued in
  2003.

      
  Dryfall data are available as a separate data package.
DOI: 10.7910/dvn/29296/r6qgjj
title: ebola-data.tab
DOI: 10.7910/dvn/29296/snosck
title: ebola-mirador.zip
DOI: 10.5281/zenodo.1473591
title: Data presented in "Laser cooling and magneto-optical trapping of molecules analyzed using optical Bloch equations and the Fokker-Planck-Kramers equation"

description: Results of simulations presented in our paper "Laser cooling and magneto-optical trapping of molecules analyzed using optical Bloch equations and the Fokker-Planck-Kramers equation"
DOI: 10.5281/zenodo.1473592
title: Data presented in "Laser cooling and magneto-optical trapping of molecules analyzed using optical Bloch equations and the Fokker-Planck-Kramers equation"

description: Results of simulations presented in our paper "Laser cooling and magneto-optical trapping of molecules analyzed using optical Bloch equations and the Fokker-Planck-Kramers equation"
DOI: 10.5517/ccdc.csd.cc1n6t0p
title: CCDC 1525882: Experimental Crystal Structure Determination

description: Related Article: Steven P. Kelley, Paula Berton, Andreas Metlen, Robin D. Rogers|2018|Physical Sciences Reviews|3|20170190|doi:10.1515/psr-2017-0190
description: Related Article: S. P Kelley, P. Berton, A. Metlen, R. D. Rogers|2018|Green Chemistry in Industry||23|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1n6t1q
title: CCDC 1525883: Experimental Crystal Structure Determination

description: Related Article: Steven P. Kelley, Paula Berton, Andreas Metlen, Robin D. Rogers|2018|Physical Sciences Reviews|3|20170190|doi:10.1515/psr-2017-0190
description: Related Article: S. P Kelley, P. Berton, A. Metlen, R. D. Rogers|2018|Green Chemistry in Industry||23|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1n8n0l
title: CCDC 1527649: Experimental Crystal Structure Determination

description: Related Article: Adrijana Z. Burmudžija, Jovana M. Muškinja, Marijana M. Kosanić, Branislav R. Ranković, Slađana B. Novaković, Snežana B. Đorđević, Tatjana P. Stanojković, Dejan D. Baskić, Zoran R. Ratković|2017|Chem.Biodiversity|14|e1700077|doi:10.1002/cbdv.201700077
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.7910/dvn/29089/q2zdb8
title: List of data sets in the World Historical Dataverse.3.2..2015.xlsx
DOI: 10.7910/dvn/29296/qz1dg7
title: ebola-raw.zip
DOI: 10.5517/ccdc.csd.cc12x2fh
title: CCDC 1010086: Experimental Crystal Structure Determination

description: Related Article: Lauren Mitchell, Julie Stanley|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1k7475
title: CCDC 1436826: Experimental Crystal Structure Determination

description: Related Article: E. Escudero, C. H. Laino, N. Martini, G. A. Echeverría, O. E. Piro, P. A. M. Williams, E. G. Ferrer|2017|Ann.Med.Chem.Res.|3|1017|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1njk6y
title: CCDC 1535250: Experimental Crystal Structure Determination

description: Related Article: Jin Xie, Kohei Sekine, Sina Witzel, Petra Krämer, Matthias Rudolph, Frank Rominger, A. Stephen K. Hashmi|2018|Angew.Chem.,Int.Ed.|57|16648|doi:10.1002/anie.201806427
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1z0tkc
title: CCDC 1818043: Experimental Crystal Structure Determination

description: Related Article: Arianna Rossetti, Martina Lippi, Javier Marti-Rujas, Alessandro Sacchetti, Massimo Cametti|2018|Chem.-Eur.J.|24|19368|doi:10.1002/chem.201804782
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1z0tmf
title: CCDC 1818045: Experimental Crystal Structure Determination

description: Related Article: Arianna Rossetti, Martina Lippi, Javier Marti-Rujas, Alessandro Sacchetti, Massimo Cametti|2018|Chem.-Eur.J.|24|19368|doi:10.1002/chem.201804782
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1z0tng
title: CCDC 1818046: Experimental Crystal Structure Determination

description: Related Article: Arianna Rossetti, Martina Lippi, Javier Marti-Rujas, Alessandro Sacchetti, Massimo Cametti|2018|Chem.-Eur.J.|24|19368|doi:10.1002/chem.201804782
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1nltdg
title: CCDC 1537426: Experimental Crystal Structure Determination

description: Related Article: Gang Liu, Xing Yang, Antoine Bonnefont,Yaokang Lv, Jun Chen, Wenyan Dan, Zuofeng Chen,  Laurent Ruhlmann, Dominic S. Wright, Cheng Zhang|2018|Chem.Commun.|54|14132|doi:10.1039/C8CC07527A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1z1jfz
title: CCDC 1818721: Experimental Crystal Structure Determination

description: Related Article: Su-Qin Chen, Jun-Ying Jiao, Xing-Guo Zhang, Xiao-Hong Zhang|2019|Tetrahedron|75|246|doi:10.1016/j.tet.2018.11.051
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1z446g
title: CCDC 1821225: Experimental Crystal Structure Determination

description: Related Article: Hirotaka Yonezawa,  Shohei Tashiro,  Takafumi Shiraogawa,  Masahiro Ehara,  Rintaro Shimada,  Takeaki Ozawa,  Mitsuhiko Shionoya|2018|J.Am.Chem.Soc.|140|16610|doi:10.1021/jacs.8b08534
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.7910/dvn/5vu6r/6ummrr
title: petitions_1.xlsx
DOI: 10.5281/zenodo.1560639
title: Dataset for BioInfoSummer tutorial

description: Data is originally from Xie et al.10.1016/j.cell.2013.04.022
DOI: 10.5281/zenodo.1560640
title: Dataset for BioInfoSummer tutorial

description: Data is originally from Xie et al.10.1016/j.cell.2013.04.022