cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25592/uhhfdm.12514
title: Wood profiling by non-targeted liquid chromatography high-resolution mass spectrometry: Part 2, Detection of the geographical origin of spruce wood (Picea abies) by determination of metabolite pattern

description: For the analysis, eleven spruce samples (<em>Picea abies</em>) from a growing area in the Rothaargebirge (Saßmannshausen close to Bad Laasphe, Germany, coordinate 50°57’00.0’’N 8°22’12.0’’E, altitude 400 m above sea level) and twenty spruce samples from Southern Palatinate Forest (Hinterweidenthal, Germany, coordinate 4 9°10’4 8.0’’N 7°40’4 8.0’’E, altitude 305 m above sea level) were used. The two locations were approximately 250 km apart. The spruce test areas were laid out in 1968/69, so that they were samples of the same age. Further information about the growing conditions can be found in the supplementary material. All the samples were collected manually in autumn 2016 because the tree ring formation is then complete and the transition of the spruce to dormancy takes place. In detail, the samples were increment cores that were taken from the tree trunks at a height of 1.30 m above the ground and had a diameter of 5 mm as well as and a maximum length of 40 cm. The samples were stored dry at room temperature until analysis. <strong>Data set</strong> The samples were measured with four different LC-MS methods, so that four data sets were obtained accordingly. The naming of the data sets contains information about the polarity of the analytes, due to the chromatographic column (polar and nonpolar) as well as the ionization mode of the MS (positive and negative). Link to the paper: https://doi.org/10.1016/j.chroma.2021.462737
description: The research for this study was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy – EXC 2176 'Understanding Written Artefacts: Material, Interaction and Transmission in Manuscript Cultures', project no. 390893796. The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at Universität Hamburg.
DOI: 10.25592/uhhfdm.12513
title: Wood profiling by non-targeted high-resolution mass spectrometry: Part 1, Metabolite profiling in Cedrela wood for the determination of the geographical origin

description: In this study, 10 samples of cedrela (<em>Cedrela odorata</em>) from the Belize region (Rio Bravo, coordinate: 17°56´07.4"N 88°47’30.5"W; Quiche Ha, coordinate: 17°28’37.2"N 88°15’41.8"W) on the east coast of Central America and 11 samples from Suriname (coordinate: 5°25’00.0"N 55°48’00.0"W) on the northeast coast of South America were utilized. The two locations have a geographical distance of approximately 3900 km. The elevation of the different sample locations is relatively identical and is app. 3 m.a.s.l.. Climatic data are also relatively similar (Belize, mean annual temperature: 26 °C; annual precipitation: 2013 mm; rainy season: june- december; Suriname, mean annual temperature: 27 °C; annual precipitation: 2068 mm; rainy season: april-july, december-january). Heartwood samples were taken from the trunk of the trees at a height of 50 cm and harvested in 2016 and 2019 All the samples were first pre-dried at room temperature, so that enzymatic processes or further chemical reactions were largely prevented, and no changes should result from the different harvest times. Furthermore, the samples were later freeze-dried for 24 h to ensure a comparable water content and to avoid further metabolic changes. The samples were stored at -20 °C until extraction. <strong>Data set</strong> The samples were measured with four different LC-MS methods, so that four data sets were obtained accordingly. The naming of the data sets contains information about the polarity of the analytes, due to the chromatographic column (polar and nonpolar) as well as the ionization mode of the MS (positive and negative). Link to the paper: https://doi.org/10.1016/j.chroma.2021.461993
description: The research for this study was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy – EXC 2176 'Understanding Written Artefacts: Material, Interaction and Transmission in Manuscript Cultures', project no. 390893796. The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at Universität Hamburg.
DOI: 10.25592/uhhfdm.12512
title: Wood profiling by non-targeted high-resolution mass spectrometry: Part 1, Metabolite profiling in Cedrela wood for the determination of the geographical origin

description: In this study, 10 samples of cedrela (<em>Cedrela odorata</em>) from the Belize region (Rio Bravo, coordinate: 17°56´07.4"N 88°47’30.5"W; Quiche Ha, coordinate: 17°28’37.2"N 88°15’41.8"W) on the east coast of Central America and 11 samples from Suriname (coordinate: 5°25’00.0"N 55°48’00.0"W) on the northeast coast of South America were utilized. The two locations have a geographical distance of approximately 3900 km. The elevation of the different sample locations is relatively identical and is app. 3 m.a.s.l.. Climatic data are also relatively similar (Belize, mean annual temperature: 26 °C; annual precipitation: 2013 mm; rainy season: june- december; Suriname, mean annual temperature: 27 °C; annual precipitation: 2068 mm; rainy season: april-july, december-january). Heartwood samples were taken from the trunk of the trees at a height of 50 cm and harvested in 2016 and 2019 All the samples were first pre-dried at room temperature, so that enzymatic processes or further chemical reactions were largely prevented, and no changes should result from the different harvest times. Furthermore, the samples were later freeze-dried for 24 h to ensure a comparable water content and to avoid further metabolic changes. The samples were stored at -20 °C until extraction. <strong>Data set</strong> The samples were measured with four different LC-MS methods, so that four data sets were obtained accordingly. The naming of the data sets contains information about the polarity of the analytes, due to the chromatographic column (polar and nonpolar) as well as the ionization mode of the MS (positive and negative). Link to the paper: https://doi.org/10.1016/j.chroma.2021.461993
description: The research for this study was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy – EXC 2176 'Understanding Written Artefacts: Material, Interaction and Transmission in Manuscript Cultures', project no. 390893796. The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at Universität Hamburg.
DOI: 10.5281/zenodo.8013519
title: Yann-Brault/splc-artifact: Zenodo reproduction package initial release

description: This is the first release to make this repository publicly reusable in the context of a software artifact evaluation at the SPLC'23 conference.
DOI: 10.6084/m9.figshare.23004563.v11
title: <strong>Diurnal versus nocturnal pollination in a subalpine wetland: from network structure to plant reproduction - Dataset</strong>

description: Dataset associated with the manuscript "<strong>Diurnal versus nocturnal pollination in a subalpine wetland: from network structure to plant reproduction</strong>" . Our study is the first to compare diurnal and nocturnal pollination networks from both the structural and reproductive perspectives.The results demonstrated that both diurnal and nocturnal pollinators played a significant role in plant reproduction, and the contribution to the reproduction of each plant might be species-specific.
DOI: 10.6084/m9.figshare.23004563.v12
title: <strong>Diurnal versus nocturnal pollination in a subalpine wetland: from network structure to plant reproduction - Dataset</strong>

description: Dataset associated with the manuscript "<strong>Diurnal versus nocturnal pollination in a subalpine wetland: from network structure to plant reproduction</strong>" . Our study is the first to compare diurnal and nocturnal pollination networks from both the structural and reproductive perspectives.The results demonstrated that both diurnal and nocturnal pollinators played a significant role in plant reproduction, and the contribution to the reproduction of each plant might be species-specific.
DOI: 10.6084/m9.figshare.23004563.v13
title: <strong>Diurnal versus nocturnal pollination in a subalpine wetland: from network structure to plant reproduction - Dataset</strong>

description: Dataset associated with the manuscript "<strong>Diurnal versus nocturnal pollination in a subalpine wetland: from network structure to plant reproduction</strong>" . Our study is the first to compare diurnal and nocturnal pollination networks from both the structural and reproductive perspectives.The results demonstrated that both diurnal and nocturnal pollinators played a significant role in plant reproduction, and the contribution to the reproduction of each plant might be species-specific.
DOI: 10.17632/8w5hwhx8hp.1
title: CA, LCA of Investment goals impact on Investment Habits

description: This data is associated with the research paper titled "A Correspondence and Latent Class Analysis of the impact of Investment goals on investing habits"
DOI: 10.17632/gtsjf32dmr.1
title: Cornuside inhibits the IL-17F/TRAF6/NF-κB pathway via the brain-gut axis in the treatment of ischemic stroke in rats

description: Ischemic stroke is a serious neurological disease with limited therapeutic options; thus, it is particularly important to find effective treatments. Restoration of gut microflora diversity is an important factor in the treatment of ischemic stroke, but the mechanism remains unclear. Cornuside is known for its unique anti-inflammatory and circulation-promoting effects; however, whether it can effectively treat ischemic stroke and its therapeutic mechanisms remain unknown. In this study, we used a rat middle cerebral artery occlusion-reperfusion model (MCAO/R) to mimic ischemic stroke in humans and to assess the cerebral protective effects of cornuside in rats with ischemic stroke. Using 16S rRNA sequencing and RNA sequencing, we explored the cornuside mechanism in the brain-gut axis that confers protection against ischemic stroke. In conclusion, cornuside can inhibit the IL-17F/TRAF6/NF-κB pathway by improving the dysregulation of intestinal microflora, reducing intestinal inflammation and neuroinflammation, and treating ischemic stroke in rats.
DOI: 10.5281/zenodo.8019910
title: The bird radar data

description: This is the original data of the bird radar measuring on Oct. 08-14, 2021, in Jinan, China. This data was used in the manuscripts &lt;Classification of Birds and Insects Using Polarimetric Weather Radar Data with a Support Vector Machine Method&gt;
DOI: 10.5281/zenodo.8019909
title: The bird radar data

description: This is the original data of the bird radar measuring on Oct. 08-14, 2021, in Jinan, China. This data was used in the manuscripts &lt;Classification of Birds and Insects Using Polarimetric Weather Radar Data with a Support Vector Machine Method&gt;
DOI: 10.6084/m9.figshare.23004563.v14
title: <strong>Diurnal versus nocturnal pollination in a subalpine wetland: from network structure to plant reproduction - Dataset</strong>

description: Dataset associated with the manuscript "<strong>Diurnal versus nocturnal pollination in a subalpine wetland: from network structure to plant reproduction</strong>" . Our study is the first to compare diurnal and nocturnal pollination networks from both the structural and reproductive perspectives.The results demonstrated that both diurnal and nocturnal pollinators played a significant role in plant reproduction, and the contribution to the reproduction of each plant might be species-specific.
DOI: 10.6084/m9.figshare.21792785
title: Column Comparison_Apogee_Calibrations

description: Apogee A60 - MESF and size (Rosetta) calibration files and output
DOI: 10.6084/m9.figshare.23004563.v15
title: <strong>Diurnal versus nocturnal pollination in a subalpine wetland: from network structure to plant reproduction - Dataset</strong>

description: Dataset associated with the manuscript "<strong>Diurnal versus nocturnal pollination in a subalpine wetland: from network structure to plant reproduction</strong>" . Our study is the first to compare diurnal and nocturnal pollination networks from both the structural and reproductive perspectives.The results demonstrated that both diurnal and nocturnal pollinators played a significant role in plant reproduction, and the contribution to the reproduction of each plant might be species-specific.
DOI: 10.6084/m9.figshare.21792797
title: Column Re-use_CD61_CD45_CD235aAPC

description: FCS files and final gates
DOI: 10.6084/m9.figshare.21792845
title: Column Comparison_CD235aFITC

description: FCS files and final gates
DOI: 10.6084/m9.figshare.21792890
title: Column Comparison_CD61FITC_CD45APC

description: FCS files and final gates
DOI: 10.6084/m9.figshare.21792890.v1
title: Column Comparison_CD61FITC_CD45APC

description: FCS files and final gates
DOI: 10.6084/m9.figshare.21792794
title: Column Re-use_Apogee_Calibrations

description: Apogee A60 - MESF and size (Rosetta) calibration files and output
DOI: 10.5281/zenodo.8017082
title: Demogaphic Reconstruction of the Western Sheep Expansion from Whole-Genome sequences

description: Sheep (<em>Ovis aries</em>) were among the earliest livestock, domesticated in the Fertile Crescent about 12000-10000 years ago with a nearly worldwide distribution today. Most of our knowledge about the timing of their expansion stems from archaeological data but it is unclear how the genetic diversity of modern sheep fits with these dates. We used whole-genome sequencing data of 63 domestic breeds and their wild relatives, the Asiatic mouflon (<em>O. gmelini</em>), to explore the demographic history of sheep. <br> On the global scale, our analysis revealed geographic structuring among breeds with unidirectional recent gene flow from domestics into Asiatic mouflons. We then selected four representative breeds from Spain, Morocco, the UK and Iran to build a comprehensive demographic model of the western sheep expansion.<br> We inferred a single domestication event around 9,000 years ago, slightly later than archaeological evidence suggests which might reflect uncertainties in the generation time used for these estimates. The westward expansion is dated to approximately 5,000 years ago, later than the original Neolithic expansion of sheep and approximately matching the Secondary Product Revolution associated with woolly sheep. We see some signals of recent gene flow from an ancestral population into southern European breeds which could reflect admixture with feral European mouflon. Furthermore, our results indicate that many breeds experienced a reduction of their effective population size during the last centuries, probably associated with the breed development.<br> Our study provides insights into the complex demographic history of western Eurasian sheep, highlighting interactions between breeds and their wild counterparts.
description: This dataset is composed by 5 individuals of 4 domestic sheep breeds from the ISGCv2 dataset, plus 5 wild mouflons from the Nextgen project. Sheep Genome Consortium v2 dataset can be accessed through the CSIRO data portal (https://doi.org/10.25919/5d39e494936c6), while the wild mouflons from the NextGen Project can be accessed via the project's webpage in Ensembl (https://projects.ensembl.org/nextgen/).
DOI: 10.5281/zenodo.8017081
title: Demogaphic Reconstruction of the Western Sheep Expansion from Whole-Genome sequences

description: Sheep (<em>Ovis aries</em>) were among the earliest livestock, domesticated in the Fertile Crescent about 12000-10000 years ago with a nearly worldwide distribution today. Most of our knowledge about the timing of their expansion stems from archaeological data but it is unclear how the genetic diversity of modern sheep fits with these dates. We used whole-genome sequencing data of 63 domestic breeds and their wild relatives, the Asiatic mouflon (<em>O. gmelini</em>), to explore the demographic history of sheep. <br> On the global scale, our analysis revealed geographic structuring among breeds with unidirectional recent gene flow from domestics into Asiatic mouflons. We then selected four representative breeds from Spain, Morocco, the UK and Iran to build a comprehensive demographic model of the western sheep expansion.<br> We inferred a single domestication event around 9,000 years ago, slightly later than archaeological evidence suggests which might reflect uncertainties in the generation time used for these estimates. The westward expansion is dated to approximately 5,000 years ago, later than the original Neolithic expansion of sheep and approximately matching the Secondary Product Revolution associated with woolly sheep. We see some signals of recent gene flow from an ancestral population into southern European breeds which could reflect admixture with feral European mouflon. Furthermore, our results indicate that many breeds experienced a reduction of their effective population size during the last centuries, probably associated with the breed development.<br> Our study provides insights into the complex demographic history of western Eurasian sheep, highlighting interactions between breeds and their wild counterparts.
description: This dataset is composed by 5 individuals of 4 domestic sheep breeds from the ISGCv2 dataset, plus 5 wild mouflons from the Nextgen project. Sheep Genome Consortium v2 dataset can be accessed through the CSIRO data portal (https://doi.org/10.25919/5d39e494936c6), while the wild mouflons from the NextGen Project can be accessed via the project's webpage in Ensembl (https://projects.ensembl.org/nextgen/).
DOI: 10.5281/zenodo.8019973
title: Dataset (Aggegation, Variance and the Mean in Braided Channel Networks)

description: This is the dataset of braided channels' images (in .bmp format ) extracted from Landsat satellite images ,available through the United States Geological Survey Earth Explorer Tool. Presented in .txt format there are the parameters Nwc (Number of braided channels) and Wwc (Width of braided channels) at maximum resolution.
DOI: 10.5281/zenodo.8019972
title: Dataset (Aggegation, Variance and the Mean in Braided Channel Networks)

description: This is the dataset of braided channels' images (in .bmp format ) extracted from Landsat satellite images ,available through the United States Geological Survey Earth Explorer Tool. Presented in .txt format there are the parameters Nwc (Number of braided channels) and Wwc (Width of braided channels) at maximum resolution.
DOI: 10.5281/zenodo.8020032
title: Mirn profiling in Als

description: MiRNA profiling in ALS
DOI: 10.5281/zenodo.8020031
title: Mirn profiling in Als

description: MiRNA profiling in ALS
DOI: 10.25835/662v76zo
title: Code Supplement: Sideband Thermometry on Ion Crystals

description: Contents: 1. Python file. Given the motional mode of an ion crystal calculates the mode-dependent coefficients (A,B-,C-,D-). Given the experimental parameters and sideband probability measurement, calculates the mean phonon number by solving the quartic equation derived in the paper. 2. Wolfram Mathematica notebook. Given the relevant Hamiltonian matrix elements calculates the explicit expressions for the crystal's ground state probabilities. By thermal averaging the ground state probabilities derives the full form of the equation connecting the sideband excitation probabilities with the mean phonon number.
DOI: 10.5281/zenodo.8013373
title: Test Genome Annotation Dataset

description: This folder contains a set of data which could be used to annotate a drosophila melanogaster genome including the genome, isoseq and rnaseq data. There is also the genbank annotation for QC purposes ##Genome<br> GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fna.gz ##Annotation<br> GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.gff.gz ##RNAseq<br> fastq files downloaded from SRA with the following accessions:<br> ###Testes<br> SRR21753563 SRR21753562 ###Ovary<br> SRR22757316 SRR22757307 ###Brain<br> SRR24426130 <br> ##Isoseq<br> fastq files downloaded from SRA with the following accessions:<br> ###Head<br> SRR19344254 SRR19344255 SRR19344256 ###Ovary<br> SRR12634521 SRR12634520 ###Testes<br> SRR12634519 SRR12634518
DOI: 10.5281/zenodo.8013372
title: Test Genome Annotation Dataset

description: This folder contains a set of data which could be used to annotate a drosophila melanogaster genome including the genome, isoseq and rnaseq data. There is also the genbank annotation for QC purposes ##Genome<br> GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fna.gz ##Annotation<br> GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.gff.gz ##RNAseq<br> fastq files downloaded from SRA with the following accessions:<br> ###Testes<br> SRR21753563 SRR21753562 ###Ovary<br> SRR22757316 SRR22757307 ###Brain<br> SRR24426130 <br> ##Isoseq<br> fastq files downloaded from SRA with the following accessions:<br> ###Head<br> SRR19344254 SRR19344255 SRR19344256 ###Ovary<br> SRR12634521 SRR12634520 ###Testes<br> SRR12634519 SRR12634518
DOI: 10.6084/m9.figshare.23451533
title: Table S2 Datasets information.xlsx from Functional traits trade-offs define plant population stability across different biomes

description: Ecological theory posits that temporal stability patterns in plant populations are associated with differences in species' ecological strategies. However, empirical evidence is lacking about which traits, or trade-offs, underlie species stability, especially across different biomes. We compiled a worldwide collection of long-term permanent vegetation records (greater than 7000 plots from 78 datasets) from a large range of habitats which we combined with existing trait databases. We tested whether the observed inter-annual variability in species abundance (coefficient of variation) was related to multiple individual traits. We found that populations with greater leaf dry matter content and seed mass were more stable over time. Despite the variability explained by these traits being low, their effect was consistent across different datasets. Other traits played a significant, albeit weaker, role in species stability, and the inclusion of multi-variate axes or phylogeny did not substantially modify nor improve predictions. These results provide empirical evidence and highlight the relevance of specific ecological trade-offs, i.e. in different resource-use and dispersal strategies, for plant populations stability across multiple biomes. Further research is, however, necessary to integrate and evaluate the role of other specific traits, often not available in databases, and intraspecific trait variability in modulating species stability.