cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/xdc-cb1-cjf
title: Indalia pygmaeola (Doubleday, 1847)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xgw-emvb
title: Heibloemsedijk 9 te Heeswijk-Dinther Gemeente Bernheze
title: Dinther - Heibloemsedijk 9

description: &lt;p&gt;Onderzoeksrapport&lt;/p&gt;
description: &lt;p&gt;Synthegra BV/Verhoeve Groep Rapportage S090346&lt;/p&gt;
description: &lt;p&gt;Dinther - Heibloemsedijk 9&lt;/p&gt;
description: Date: 2009-09-28 (veldwerk)
DOI: 10.3535/bcr-dj2-cj8
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ed8-sqh-212
title: Arethusana arethusa [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hbn-6p9-jwp
title: Troides amphrysus (Cramer, [1779] )

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xgw-etzm
title: Inventariserend Veldonderzoek. Kavel 17, Laan van Zuidhoorn te Rijswijk
title: RLZH09

description: &lt;p&gt;Proefsleuven onderzoek in verband met bouwplannen&lt;/p&gt;
description: &lt;p&gt;Rijswijk - Laan van Zuidhoorn Kavel 17&lt;/p&gt;
description: &lt;p&gt;RLZH09&lt;/p&gt;
description: Date: 2009-06-29 (veldwerk)
DOI: 10.3535/d6x-yas-cx2
title: Euthalia sahadeva Moore, 1859

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jha-wx4-k17
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mbd-hlb-skb
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nx4-nnw-j2d
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xgw-gf39
title: Plangebied ABF-terrein, gemeente Wassenaar

description: &lt;p&gt;onderzoeksrapport&lt;/p&gt;
description: Date: 25-10-2004 (aanvang onderzoek)
DOI: 10.3535/cec-f1x-wez
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jal-tqm-7rx
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6hd-p3e-cxp
title: Hesperiidae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r6m-vkz-0a7
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zkf-r1p-t9v
title: Satyrinae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ags-z45-3ys
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ep0-6ab-yzh
title: Papilio peranthus Fabricius, 1787

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xgw-h65j
title: PAN-00034255 - oval to half round buckle, broadened front with grooves

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00034255&lt;/p&gt;
description: Modified: 2019-10-11T15:36:33+02:00
DOI: 10.3535/5sr-s5m-abg
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gn5-8rs-gs6
title: Caleta Fruhstorfer, 1922

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v4t-f5n-xa6
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xgw-h8ea
title: PAN-00028593 - coin/coin-related, Jacobus I (1603-1625), two pence (half groat)

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00028593&lt;/p&gt;
description: Modified: 2021-09-07T13:54:36+02:00
DOI: 10.3535/qka-rqy-vny
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vrj-3hs-y5g
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3cr-sf2-872
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6nl-a8b-p18
title: Delias mysis (Fabricius, 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2tf-hqt-qp5
title: Acraea vesta Fabricius, 1787

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c56-hqp-20f
title: Phyciodes Hübner, 1819

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xgw-ksk2
title: PAN-00005788 - coin/coin-related, Marcus Aurelius (161-180), denarius

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00005788&lt;/p&gt;
description: Modified: 2020-06-09T08:32:22+02:00
DOI: 10.3535/lp1-6rt-33s
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ypq-1vj-6qx
title: Hesperiidae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5cz-m6l-lgh
title: Catopsilia scylla (Linnaeus, 1763)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n4a-mfn-n5x
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xgw-kvdz
title: PAN-00134285 - Roman spoon group A

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00134285&lt;/p&gt;
description: Modified: 2023-08-08T14:32:47+02:00
DOI: 10.3535/may-czj-5hf
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y7c-4ww-z8g
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yyl-bcv-8tn
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xgw-mydt
title: PAN-00053444 - Early Modern quant pole

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00053444&lt;/p&gt;
description: Modified: 2019-09-10T10:32:51+02:00
DOI: 10.3535/2vg-gxp-6t3
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kt0-fss-a2c
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l0c-dhv-5m2
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/llf-1wa-lky
title: Junonia lemonias (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3xh-fy7-l9h
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ahm-n55-eap
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nlb-mz4-4e3
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xgw-n9ps
title: PAN-00078320 - pseudo coin brooch cast group C

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00078320&lt;/p&gt;
description: Modified: 2022-05-19T16:17:59+02:00
DOI: 10.3535/gf8-rcx-sdg
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rrj-vhj-qfc
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.v9hch2
title: Occurrence Download

description: A dataset containing 1977 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Pakistan",
 "OccurrenceStatus is Present",
 "TaxonKey is Merops orientalis Latham, 1801"
 ]
}

 The dataset includes 1977 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089177-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/2f5-tx9-8t0
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xgw-nm4p
title: PAN-00097378 - coin/coin-related, provincie, duit

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00097378&lt;/p&gt;
description: Modified: 2022-03-21T15:05:37+01:00
DOI: 10.3535/n17-fpk-6dg
title: Jamides coritus (Guérin-Méneville, 1829)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xbs-3kf-b4s
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.15595605
title: S34I airborne hyperspectral dataset 2

description: Metadata Information
 


Identification
S34I airborne hyperspectral dataset 2


Full Title
Flight lines 10-17/17 of S34I airborne hyperspectral project, co-registered VNIR-SWIR reflectance data in ~360 spectral bands


Abstract
Collected with Specim AisaFENIX sensor to a contiguous hyperspectral datacube, georeferenced with IGI AEROcontrol, Fenix data processed using Specim factory calibration, georeferenced by time-synchronized GNSS/IMU trajectory, orthorectified by DSM from LiDAR flight, reflectance result smoothed by Savitzky-Golay filtering 


Keywords
Airborne hyperspectral reflectance


Pilot area
Sierra del Aramo, Asturias, Spain


Associated resources
Collected LiDAR data, DSM/DEM, spectral libraries


Language
English


URL
 


Categories
 


Temporal reference
 


Creation date (dd.mm.yyyy)
Data flown 24th April 2024. Processeds result uploaded to Zenodo 13th Sept 2024


Revision date (dd.mm.yyyy)
 


Quality and validity
 


Representation type
 


Format
zipped *.BIL 


Lineage
 


Spatial resolution
1-2m GSD


Positional accuracy
1-2m


Maintenance information
 


Coordinate system
WGS84


Constraints related to access and use
 


Use limitation
Open access


Access constraint
No


Public/Private
Public


Responsible organisation
 


Responsible Contact
Petri Nygrén


Responsible Party
Spectral Mapping Services SMAPS Oy


Metadata on metadata
 


Contact
Petri Nygrén


Metadata language
English
DOI: 10.5281/zenodo.15595606
title: S34I airborne hyperspectral dataset 2

description: Metadata Information
 


Identification
S34I airborne hyperspectral dataset 2


Full Title
Flight lines 10-17/17 of S34I airborne hyperspectral project, co-registered VNIR-SWIR reflectance data in ~360 spectral bands


Abstract
Collected with Specim AisaFENIX sensor to a contiguous hyperspectral datacube, georeferenced with IGI AEROcontrol, Fenix data processed using Specim factory calibration, georeferenced by time-synchronized GNSS/IMU trajectory, orthorectified by DSM from LiDAR flight, reflectance result smoothed by Savitzky-Golay filtering 


Keywords
Airborne hyperspectral reflectance


Pilot area
Sierra del Aramo, Asturias, Spain


Associated resources
Collected LiDAR data, DSM/DEM, spectral libraries


Language
English


URL
 


Categories
 


Temporal reference
 


Creation date (dd.mm.yyyy)
Data flown 24th April 2024. Processeds result uploaded to Zenodo 13th Sept 2024


Revision date (dd.mm.yyyy)
 


Quality and validity
 


Representation type
 


Format
zipped *.BIL 


Lineage
 


Spatial resolution
1-2m GSD


Positional accuracy
1-2m


Maintenance information
 


Coordinate system
WGS84


Constraints related to access and use
 


Use limitation
Open access


Access constraint
No


Public/Private
Public


Responsible organisation
 


Responsible Contact
Petri Nygrén


Responsible Party
Spectral Mapping Services SMAPS Oy


Metadata on metadata
 


Contact
Petri Nygrén


Metadata language
English
DOI: 10.3535/fnt-1z1-dff
title: Colias fieldii Ménétriès, 1855

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zmg-h0y-1qp
title: Petrelaea tombugensis (Röber, 1886)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a78-kfp-8js
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.34740/kaggle/dsv/13530618
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.yt3s58
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Corymbia maculata",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060869-250920141307145/datasets/export for details.
DOI: 10.15468/dl.zy7tcb
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Corymbia maculata",
 "Country is Seychelles",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060870-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aq6c53
title: Occurrence Download

description: A dataset containing 25655 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-0.00497 51.5286,-0.00958 51.52732,-0.01158 51.52509,-0.0105 51.52235,-0.00707 51.52107,-0.00102 51.52129,0.00185 51.52321,0.00267 51.52519,0.00206 51.52726,0.00062 51.52806,-0.00245 51.52866,-0.00497 51.5286))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 25655 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060873-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g5ku29
title: Occurrence Download

description: A dataset containing 585 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Coraciiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-150 -30,-120 -30,-120 0,-150 0,-150 -30))"
 ]
}

 The dataset includes 585 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060871-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v4sds9
title: Occurrence Download

description: A dataset containing 215 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Actaea heracleifolia (Kom.) Compton"
 ]
}

 The dataset includes 215 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030987-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26188/28013771
title: Scripts for pairwise nucleotide identity graphs

description: Design of the nemabiome assay and selection of target genes<br>Publicly available known rDNA regions were assessed for their suitability to detect nematode clades containing key parasitic genera known to infect canines, humans and other animals. A curated database of relevant parasitic GIN rDNA regions was downloaded from NCBI’s GenBank (29.01.24) and aligned using MAFFT (Katoh & Standley, 2013) to be able to assess the interspecific nucleotide diversity of different rDNA regions for the parasitic nematode clades, I, III, IV and V (Smythe et al., 2019). To compare nucleotide identity between rDNA loci of GIN clades, sequence alignments were firstly separated into 18S and ITS1-to-ITS2 regions for each clade and then dereplicated so that only one sequence from each GIN species was represented. For each locus, gaps in alignments were removed using trimAL (Capella-Gutiérrez et al., 2009) with the parameters -resoverlap 0.5 and -seqoverlap 50. Next, a pairwise nucleotide distance matrix was built using a custom python script is available in this folder entitled 'distance'. Finally, for each distance matrix, pairwise and median nucleotide identities were displayed using violin and jitter plots in R studio (R Core Team, 2021) with the packages ggplot2 (Wickham, 2011), and dplyr (Yarberry, 2021). See 'Nemabiome_rDNA_combined_script' within this folder for how this was achieved.<br>
DOI: 10.26188/28013771.v1
title: Scripts for pairwise nucleotide identity graphs

description: Design of the nemabiome assay and selection of target genes<br>Publicly available known rDNA regions were assessed for their suitability to detect nematode clades containing key parasitic genera known to infect canines, humans and other animals. A curated database of relevant parasitic GIN rDNA regions was downloaded from NCBI’s GenBank (29.01.24) and aligned using MAFFT (Katoh & Standley, 2013) to be able to assess the interspecific nucleotide diversity of different rDNA regions for the parasitic nematode clades, I, III, IV and V (Smythe et al., 2019). To compare nucleotide identity between rDNA loci of GIN clades, sequence alignments were firstly separated into 18S and ITS1-to-ITS2 regions for each clade and then dereplicated so that only one sequence from each GIN species was represented. For each locus, gaps in alignments were removed using trimAL (Capella-Gutiérrez et al., 2009) with the parameters -resoverlap 0.5 and -seqoverlap 50. Next, a pairwise nucleotide distance matrix was built using a custom python script is available in this folder entitled 'distance'. Finally, for each distance matrix, pairwise and median nucleotide identities were displayed using violin and jitter plots in R studio (R Core Team, 2021) with the packages ggplot2 (Wickham, 2011), and dplyr (Yarberry, 2021). See 'Nemabiome_rDNA_combined_script' within this folder for how this was achieved.<br>
DOI: 10.26188/28013753
title: Nemabiome ITS Database

description: 18S, ITS1 and ITS2, 28S Full Nematode Database: Building a NanoCLUST Db for Parasitic Nematodes using 18S rRNA, 28S rRNA, ITS1, 5.8S and ITS2. Nematoda Taxonomy ID: 6231 (hence must use txid6231). <br>Key words:18S ribosomal RNA18S rRNA18S28S ribosomal RNA28S rRNA28S5.8S ribosomal RNA5.8S rRNA5.8SRibosomal RNASSU rRNALSU rRNASSU ribosomal RNALSU ribosomal RNAInternal transcribed spacerInternal transcribed spacer 1Internal transcribed spacer 2ITSITS1ITS2<br>Final NCBI GenBank search term:(((((((((((((((((((((((((18S ribosomal RNA[Title]) OR 18S rRNA[Title]) OR 18S[Title]) OR 28S ribosomal RNA[Title]) OR 28S rRNA[Title]) OR 28S[Title]) OR 5.8S ribosomal RNA[Title]) OR 5.8S rRNA[Title]) OR 5.8S[Title]) OR ribosomal RNA[Title]) OR SSU rRNA[Title]) OR LSU rRNA[Title]) OR SSU ribosomal RNA[Title]) OR LSU ribosomal RNA[Title]) OR Internal transcribed spacer[Title]) OR Internal transcribed spacer 1[Title]) OR Internal transcribed spacer 2[Title]) OR ITS[Title]) OR ITS1[Title]) OR ITS2[Title]) AND txid6231[Organism])) AND 200:10000[Sequence Length])) AND nuccore pubmed[Filter]) NOT unverified[Keyword]<br>Downloaded as a fasta file.<br>Next a list of clade III and V parasitic nematodes i.e. the Ascarids, Ancylostomatids, etc were obtained – these downloaded as a fasta file.Next this fasta file had the titles of the sequences changed to ‘sham’ titles to non-descript accession numbers e.g. Unidentified nematode 18S ribosomal RNA, partial sequence, <br># Simplify the headers of your database fasta file$ awk '{if($0~/^&gt;/){print $1} else {print $0}}' Nemabiome_rRNA_fasta_v5_sequences.fasta &gt; Nematoda_rRNA-ITS-5.8S_v5_30.04.24.fasta# Make a text file of all the accession numbers in the database fasta file$ awk '{if ($1~/^&gt;/) print substr($1,2)}' Nematoda_rRNA-ITS-5.8S_v5_30.04.24.fasta &gt; Nematoda_rRNA_v5_accession_ids.txt# Create a mapping table of each accession to its taxa id - takes about 10 minutes as it has to read each of the 300 million lines nucl_gb.accession2taxid$ awk -F"\t" 'BEGIN{while(getline&lt;"Nematoda_rRNA_v5_accession_ids.txt") hash[$1]=1} {if ($2 in hash) print $2,$3}' nucl_gb.accession2taxid &gt; Nematode_rRNA_v5_tax_map.txt# Make the blast database using the database fasta file for example: $ makeblastdb -in Nematoda_rRNA-ITS-5.8S_v5_30.04.24.fasta -parse_seqids -blastdb_version 5 -taxid_map Nematode_rRNA_v5_tax_map.txt -title "Nemabiome_rRNA database_v5" -out Nemabiome_rRNA_v5_db -dbtype nucl<br>Final database files produced = 10. For example Nemabiome_rRNA_v5_db.ndb, Nemabiome_rRNA_v5_db.nhr, Nemabiome_rRNA_v5_db.nin<br>These can be used by NanoCLUST e.g. in the command <br>nextflow run main.nf -profile docker --reads '/home/Public/Ps1/Lucas_Workspace/MinION_Nemabiome_ECR_Project_SUPdata/100_Sample_Comparison_96-well_Trial-4/pass/barcodes01-96/ITS-reads-amended-filtered/barcode30.tmp.inverse.pblat.fix.fastq-filt.fastq.gz' --db "db/Nemabiome_rRNA_v5_db" --tax "db" --min_read_length 700 --max_read_length 1800 --min_cluster_size 100 --polishing_reads 100 --cluster_sel_epsilon 1 --max_memory ’84.GB’ --max_cpus 12 --outdir ./Nemabiome_trial