cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5969899.v1
title: Additional file 3: of Quartz-Seq2: a high-throughput single-cell RNA-sequencing method that effectively uses limited sequence reads

description: Table S2. Differentially expressed genes between clusters 1 and 8. (XLSX 85 kb)
DOI: 10.6084/m9.figshare.5969893
title: Additional file 2: of Quartz-Seq2: a high-throughput single-cell RNA-sequencing method that effectively uses limited sequence reads

description: Table S1. Cost calculation for Quartz-seq2. (XLSX 97 kb)
DOI: 10.6084/m9.figshare.5969893.v1
title: Additional file 2: of Quartz-Seq2: a high-throughput single-cell RNA-sequencing method that effectively uses limited sequence reads

description: Table S1. Cost calculation for Quartz-seq2. (XLSX 97 kb)
DOI: 10.6084/m9.figshare.5969881
title: Additional file 1: of Loss-to-follow-up and delay to treatment initiation in Pakistanâ s national tuberculosis control programme

description: De-identified data taken from patient registers. (XLSX 413 kb)
DOI: 10.6084/m9.figshare.5969881.v1
title: Additional file 1: of Loss-to-follow-up and delay to treatment initiation in Pakistanâ s national tuberculosis control programme

description: De-identified data taken from patient registers. (XLSX 413 kb)
DOI: 10.6084/m9.figshare.5969863
title: Additional file 4: of Signature of circular RNAs in human induced pluripotent stem cells and derived cardiomyocytes

description: Table S2. Presenting circRNAs identified in hiPSCs and hiPSC-CMs (XLSX 315 kb)
DOI: 10.6084/m9.figshare.5969863.v1
title: Additional file 4: of Signature of circular RNAs in human induced pluripotent stem cells and derived cardiomyocytes

description: Table S2. Presenting circRNAs identified in hiPSCs and hiPSC-CMs (XLSX 315 kb)
DOI: 10.6084/m9.figshare.5969854
title: Additional file 4: of Upscaling Participatory Action and Videos for Agriculture and Nutrition (UPAVAN) trial comparing three variants of a nutrition-sensitive agricultural extension intervention to improve maternal and child nutritional outcomes in rural Odisha, India: study protocol for a cluster randomised controlled trial

description: Consent forms. (ZIP 1740 kb)
DOI: 10.6084/m9.figshare.5969854.v1
title: Additional file 4: of Upscaling Participatory Action and Videos for Agriculture and Nutrition (UPAVAN) trial comparing three variants of a nutrition-sensitive agricultural extension intervention to improve maternal and child nutritional outcomes in rural Odisha, India: study protocol for a cluster randomised controlled trial

description: Consent forms. (ZIP 1740 kb)
DOI: 10.6084/m9.figshare.5969836
title: Additional file 1: of Prematurity, ventricular septal defect and dysmorphisms are independent predictors of pathogenic copy number variants: a retrospective study on array-CGH results and phenotypical features of 293 children with neurodevelopmental disorders and/or multiple congenital anomalies

description: Table S1. All CNVs of the analyzed sample (323 CNVs). Molecular cytogenetic data of all CNVs detected (type, position, number of genes, inheritance), technical characteristics of microarray performed (platform and resolution) and clinical significance assigned to CNV for the single patient [ampl: amplification, del: deletion, dup: duplication, tetr: tetrasomy, trip: triplication, *: mosaicism, mat: maternal, pat: paternal, NA: not available, P: pathogenic, LB: likely benign, LP: likely pathogenic]. (XLS 95Â kb)
DOI: 10.6084/m9.figshare.5969836.v1
title: Additional file 1: of Prematurity, ventricular septal defect and dysmorphisms are independent predictors of pathogenic copy number variants: a retrospective study on array-CGH results and phenotypical features of 293 children with neurodevelopmental disorders and/or multiple congenital anomalies

description: Table S1. All CNVs of the analyzed sample (323 CNVs). Molecular cytogenetic data of all CNVs detected (type, position, number of genes, inheritance), technical characteristics of microarray performed (platform and resolution) and clinical significance assigned to CNV for the single patient [ampl: amplification, del: deletion, dup: duplication, tetr: tetrasomy, trip: triplication, *: mosaicism, mat: maternal, pat: paternal, NA: not available, P: pathogenic, LB: likely benign, LP: likely pathogenic]. (XLS 95Â kb)
DOI: 10.6084/m9.figshare.12894227
title: R0189_20171009a_videos

description: Rat 0189, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12894227.v1
title: R0189_20171009a_videos

description: Rat 0189, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.5969824
title: Additional file 1: of Computer simulation of syringomyelia in dogs

description: Geometric parameters of the model.á (XLSX 18 kb)
DOI: 10.6084/m9.figshare.5969824.v1
title: Additional file 1: of Computer simulation of syringomyelia in dogs

description: Geometric parameters of the model.á (XLSX 18 kb)
DOI: 10.6084/m9.figshare.5969821
title: Additional file 2: of Upscaling Participatory Action and Videos for Agriculture and Nutrition (UPAVAN) trial comparing three variants of a nutrition-sensitive agricultural extension intervention to improve maternal and child nutritional outcomes in rural Odisha, India: study protocol for a cluster randomised controlled trial

description: Baseline questionnaires. (ZIP 6604 kb)
DOI: 10.6084/m9.figshare.5969821.v1
title: Additional file 2: of Upscaling Participatory Action and Videos for Agriculture and Nutrition (UPAVAN) trial comparing three variants of a nutrition-sensitive agricultural extension intervention to improve maternal and child nutritional outcomes in rural Odisha, India: study protocol for a cluster randomised controlled trial

description: Baseline questionnaires. (ZIP 6604 kb)
DOI: 10.6084/m9.figshare.5969809
title: Additional file 1: of Signature of circular RNAs in human induced pluripotent stem cells and derived cardiomyocytes

description: Table S1. Presenting primers used for circRNA detection in this study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.5969809.v1
title: Additional file 1: of Signature of circular RNAs in human induced pluripotent stem cells and derived cardiomyocytes

description: Table S1. Presenting primers used for circRNA detection in this study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.5969779
title: Additional file 1: of Contrasting groups’ standard setting for consequences analysis in validity studies: reporting considerations

description: Excel file to ease conduction and reporting of contrasting groups analyses. (XLSX 234 kb)
DOI: 10.6084/m9.figshare.5969779.v1
title: Additional file 1: of Contrasting groups’ standard setting for consequences analysis in validity studies: reporting considerations

description: Excel file to ease conduction and reporting of contrasting groups analyses. (XLSX 234 kb)
DOI: 10.6084/m9.figshare.5969755
title: Additional file 2: of Infection prevention behaviour and infectious disease modelling: a review of the literature and recommendations for the future

description: This excel spreadsheet contains the table detailing all extracted data summarised within the manuscript. (XLSX 26Â kb)
DOI: 10.6084/m9.figshare.5969755.v1
title: Additional file 2: of Infection prevention behaviour and infectious disease modelling: a review of the literature and recommendations for the future

description: This excel spreadsheet contains the table detailing all extracted data summarised within the manuscript. (XLSX 26Â kb)
DOI: 10.6084/m9.figshare.5969746
title: MOESM7 of Neuroprotective dobutamine treatment upregulates superoxide dismutase 3, anti-oxidant and survival genes and attenuates genes mediating inflammation

description: Additional file 7: Table S7. Regulated genes involved in cytoskeleton and extracellular matrix dynamics in all experimental groups classified by gene ontology. Abbreviations: D—dobutamine; LPS—lipopolysaccharide; OGD—oxygen–glucose-deprivation.
DOI: 10.6084/m9.figshare.5969746.v1
title: MOESM7 of Neuroprotective dobutamine treatment upregulates superoxide dismutase 3, anti-oxidant and survival genes and attenuates genes mediating inflammation

description: Additional file 7: Table S7. Regulated genes involved in cytoskeleton and extracellular matrix dynamics in all experimental groups classified by gene ontology. Abbreviations: D—dobutamine; LPS—lipopolysaccharide; OGD—oxygen–glucose-deprivation.
DOI: 10.6084/m9.figshare.5969728
title: MOESM6 of Neuroprotective dobutamine treatment upregulates superoxide dismutase 3, anti-oxidant and survival genes and attenuates genes mediating inflammation

description: Additional file 6: Table S6. Regulated genes involved in development in all experimental groups classified by gene ontology. Abbreviations: D—dobutamine; LPS—lipopolysaccharide; OGD—oxygen–glucose-deprivation.
DOI: 10.6084/m9.figshare.5969728.v1
title: MOESM6 of Neuroprotective dobutamine treatment upregulates superoxide dismutase 3, anti-oxidant and survival genes and attenuates genes mediating inflammation

description: Additional file 6: Table S6. Regulated genes involved in development in all experimental groups classified by gene ontology. Abbreviations: D—dobutamine; LPS—lipopolysaccharide; OGD—oxygen–glucose-deprivation.
DOI: 10.6084/m9.figshare.5969716
title: MOESM5 of Neuroprotective dobutamine treatment upregulates superoxide dismutase 3, anti-oxidant and survival genes and attenuates genes mediating inflammation

description: Additional file 5: Table S5. Regulated genes involved in growth and cell cycle related mechanisms in all experimental groups classified by gene ontology. Abbreviations: D—dobutamine; LPS—lipopolysaccharide; OGD—oxygen–glucose-deprivation.
DOI: 10.6084/m9.figshare.5969716.v1
title: MOESM5 of Neuroprotective dobutamine treatment upregulates superoxide dismutase 3, anti-oxidant and survival genes and attenuates genes mediating inflammation

description: Additional file 5: Table S5. Regulated genes involved in growth and cell cycle related mechanisms in all experimental groups classified by gene ontology. Abbreviations: D—dobutamine; LPS—lipopolysaccharide; OGD—oxygen–glucose-deprivation.
DOI: 10.6084/m9.figshare.5969710
title: MOESM2 of Proteomics-based insights into mitogen-activated protein kinase inhibitor resistance of cerebral melanoma metastases

description: Additional file 2: TableÂ S1. Clinical table with age, gender, treatment, response distribution, PFS, mutational status, all number of samples, IC50 of the cell systems and the applied methods.
DOI: 10.6084/m9.figshare.5969710.v1
title: MOESM2 of Proteomics-based insights into mitogen-activated protein kinase inhibitor resistance of cerebral melanoma metastases

description: Additional file 2: TableÂ S1. Clinical table with age, gender, treatment, response distribution, PFS, mutational status, all number of samples, IC50 of the cell systems and the applied methods.
DOI: 10.6084/m9.figshare.5969701
title: MOESM4 of Neuroprotective dobutamine treatment upregulates superoxide dismutase 3, anti-oxidant and survival genes and attenuates genes mediating inflammation

description: Additional file 4: Table S4. Regulated genes involved in metabolism and transport processes in all experimental groups classified by gene ontology. Abbreviations: D—dobutamine; LPS—lipopolysaccharide; OGD—oxygen–glucose-deprivation.
DOI: 10.6084/m9.figshare.5969701.v1
title: MOESM4 of Neuroprotective dobutamine treatment upregulates superoxide dismutase 3, anti-oxidant and survival genes and attenuates genes mediating inflammation

description: Additional file 4: Table S4. Regulated genes involved in metabolism and transport processes in all experimental groups classified by gene ontology. Abbreviations: D—dobutamine; LPS—lipopolysaccharide; OGD—oxygen–glucose-deprivation.
DOI: 10.6084/m9.figshare.5969692
title: Additional file 1: of A digital assessment system for evaluating kinetic tremor in essential tremor and Parkinsonâ s disease

description: Datasets. (XLSX 286Â kb)
DOI: 10.6084/m9.figshare.5969692.v1
title: Additional file 1: of A digital assessment system for evaluating kinetic tremor in essential tremor and Parkinsonâ s disease

description: Datasets. (XLSX 286Â kb)
DOI: 10.6084/m9.figshare.5969677
title: MOESM3 of Neuroprotective dobutamine treatment upregulates superoxide dismutase 3, anti-oxidant and survival genes and attenuates genes mediating inflammation

description: Additional file 3: Table S3. Regulated genes involved in mechanisms of cell death and cell survival in all experimental groups classified by gene ontology. Abbreviations: D—dobutamine; LPS—lipopolysaccharide; OGD—oxygen–glucose-deprivation.
DOI: 10.6084/m9.figshare.5969677.v1
title: MOESM3 of Neuroprotective dobutamine treatment upregulates superoxide dismutase 3, anti-oxidant and survival genes and attenuates genes mediating inflammation

description: Additional file 3: Table S3. Regulated genes involved in mechanisms of cell death and cell survival in all experimental groups classified by gene ontology. Abbreviations: D—dobutamine; LPS—lipopolysaccharide; OGD—oxygen–glucose-deprivation.
DOI: 10.6084/m9.figshare.5969662
title: MOESM2 of Neuroprotective dobutamine treatment upregulates superoxide dismutase 3, anti-oxidant and survival genes and attenuates genes mediating inflammation

description: Additional file 2: Table S2. Regulated genes involved in transcription in all experimental groups classified by gene ontology. Abbreviations: D—dobutamine; LPS—lipopolysaccharide; OGD—oxygen–glucose-deprivation.
DOI: 10.6084/m9.figshare.5969662.v1
title: MOESM2 of Neuroprotective dobutamine treatment upregulates superoxide dismutase 3, anti-oxidant and survival genes and attenuates genes mediating inflammation

description: Additional file 2: Table S2. Regulated genes involved in transcription in all experimental groups classified by gene ontology. Abbreviations: D—dobutamine; LPS—lipopolysaccharide; OGD—oxygen–glucose-deprivation.
DOI: 10.6084/m9.figshare.5969650
title: MOESM1 of Neuroprotective dobutamine treatment upregulates superoxide dismutase 3, anti-oxidant and survival genes and attenuates genes mediating inflammation

description: Additional file 1: Table S1. Regulated genes involved in signalling cascades in all experimental groups classified by gene ontology. Abbreviations: D—dobutamine; LPS—lipopolysaccharide; OGD—oxygen–glucose-deprivation.
DOI: 10.6084/m9.figshare.5969650.v1
title: MOESM1 of Neuroprotective dobutamine treatment upregulates superoxide dismutase 3, anti-oxidant and survival genes and attenuates genes mediating inflammation

description: Additional file 1: Table S1. Regulated genes involved in signalling cascades in all experimental groups classified by gene ontology. Abbreviations: D—dobutamine; LPS—lipopolysaccharide; OGD—oxygen–glucose-deprivation.
DOI: 10.6084/m9.figshare.5969602
title: MOESM5 of Normal sleep bouts are not essential for C. elegans survival and FoxO is important for compensatory changes in sleep

description: Additional file 5: Raw Data File.
DOI: 10.6084/m9.figshare.5969602.v1
title: MOESM5 of Normal sleep bouts are not essential for C. elegans survival and FoxO is important for compensatory changes in sleep

description: Additional file 5: Raw Data File.
DOI: 10.6084/m9.figshare.5969557
title: Additional file 3: of An applied statistical method to identify desertification indicators in northeastern Iran

description: The raw data used in statistical algorithms. (CSV 3Â kb)
DOI: 10.6084/m9.figshare.5969557.v1
title: Additional file 3: of An applied statistical method to identify desertification indicators in northeastern Iran

description: The raw data used in statistical algorithms. (CSV 3Â kb)
DOI: 10.6084/m9.figshare.5969539
title: Additional file 2: of Development of polymorphic EST microsatellite markers for the sand fly, Phlebotomus papatasi (Diptera: Psychodidae)

description: Table S2. The deviance information criterion (DIC) comparison results between “nb” and “nbf” models. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.5969539.v1
title: Additional file 2: of Development of polymorphic EST microsatellite markers for the sand fly, Phlebotomus papatasi (Diptera: Psychodidae)

description: Table S2. The deviance information criterion (DIC) comparison results between “nb” and “nbf” models. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.5969515
title: Additional file 1: of Development of polymorphic EST microsatellite markers for the sand fly, Phlebotomus papatasi (Diptera: Psychodidae)

description: Table S1. Fis calculations using Bayesian based individual inbreeding model (IIM) implemented in the program INEST 2.0. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.5969515.v1
title: Additional file 1: of Development of polymorphic EST microsatellite markers for the sand fly, Phlebotomus papatasi (Diptera: Psychodidae)

description: Table S1. Fis calculations using Bayesian based individual inbreeding model (IIM) implemented in the program INEST 2.0. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.5969512
title: Additional file 2 of An interpretable framework for clustering single-cell RNA-Seq datasets

description: PBMC differential expression analysis. A one-versus-rest differential expression analysis based on independent Welchâ s t-tests for the Zheng et al. PBMC dataset of 17426 cells, 908 features described in the main text. (TSV 10 kb)
DOI: 10.6084/m9.figshare.5969512.v1
title: Additional file 2 of An interpretable framework for clustering single-cell RNA-Seq datasets

description: PBMC differential expression analysis. A one-versus-rest differential expression analysis based on independent Welchâ s t-tests for the Zheng et al. PBMC dataset of 17426 cells, 908 features described in the main text. (TSV 10 kb)
DOI: 10.6084/m9.figshare.5969335
title: Data for "Multigenerational memory and adaptive adhesion in early bacterial biofilm communities"

description: Data for "Multigenerational memory and adaptive adhesion in early bacterial biofilm communities", published in PNAS in 2018 (doi:10.1073/pnas.1720071115).<br><br>Binary images (generated from the bright-field images) and the fluorescence images (for datasets that use the cAMP reporter) are available here. These data are stored as MATLAB data files (.mat) containing variables that are 3-D matrices with dimensions [y,x,t]. Binary images are stored as a single variable per data file, where each variable contains images corresponding to a single fluorescence image. Fluorescence images are stored together in a single data file with 2 matrix variables corresponding to each fluorescence image channel. Each dataset is stored inside a .zip archive file.<br>
DOI: 10.6084/m9.figshare.5969266
title: Simpson et al., (2018). Aging and Mental Health. Supplementary Methodology

description: <strong>This file contains supplementary methodology for the following article</strong>:<br>Simpson, I. C., Dumitrache, C, G., & Calet, N. (2018). Mental health symptoms and verbal fluency in elderly people: Evidence from the Spanish Longitudinal study of aging. <em>Aging & Mental Health</em>. doi: 10.1080/13607863.2018.1448969<br><br>
DOI: 10.6084/m9.figshare.5969230
title: pearl millet genomic selection field layout

description: This is the alpha lattice design for pearl millet field layout in 2015 including both parental inbreds and hybrids for pearl millet genomic selection project.
DOI: 10.6084/m9.figshare.5969230.v1
title: pearl millet genomic selection field layout

description: This is the alpha lattice design for pearl millet field layout in 2015 including both parental inbreds and hybrids for pearl millet genomic selection project.
DOI: 10.6084/m9.figshare.5969230.v2
title: pearl millet genomic selection field layout

description: This is the alpha lattice design for pearl millet field layout in 2015 including both parental inbreds and hybrids for pearl millet genomic selection project.
DOI: 10.6084/m9.figshare.5968969
title: BLAST versus BridgIT scores

description: The list of BridgIT reaction-reaction comparisons together with BLAST sequence-sequence comparisons.<br>
DOI: 10.6084/m9.figshare.5968969.v1
title: BLAST versus BridgIT scores

description: The list of BridgIT reaction-reaction comparisons together with BLAST sequence-sequence comparisons.<br>
DOI: 10.6084/m9.figshare.5968960
title: Single-cell RNA-seq data from microfluidic emulsion (v2)

description: Gene-count files and metadata files for single cells from different organs of mice processed on the 10X Genomics Platform. The counts are given using the .mtx file output by the CellRanger program, with one folder per run.<br>Includes data for 422,803 droplets, 55,656 of which passed a QC cutoff of 500 genes and 1000 UMI.<br>Cell annotations using the Cell Ontology [1] controlled vocabulary are in a separate csv.<br>[1] http://purl.obolibrary.org/obo/cl.owl<br>Update 2018-09-20: Updated Annotations to latest version<br><b>Why it's different from the previous version </b>(https://figshare.com/account/projects/27733/articles/5715025):Renamed tissues for nomenclature standards: "Colon" --&gt; "Large_Intestine" "Heart" --&gt; "Heart_and_Aorta" "Muscle" --&gt; "Limb_Muscle" "Mammary" --&gt; "Mammary_Gland" "Brain_Microglia" --&gt; "Brain_Myeloid" "Brain_Non-microglia" --&gt; "Brain_Non-Myeloid"Update 2018-03-28: Uploaded resubmitted annotations, with within-tissue (organ) tSNE coordinates
DOI: 10.6084/m9.figshare.5968948
title: Soil properties for samples collected in the Southern Sierra Critical Zone Observatory

description: The data contains soil properties for samples collected in the Southern Sierra Critical Zone Observatory (http://criticalzone.org/sierra/). <br>Site:San Joaquin Experimental Range (SJER): Lat 37.1087º, Long -119.7313º, Elevation 405 (masl)Soaproot Saddle (SPR): Lat 37.0311º, Long -119.2563º, Elevation 1160 (masl)Providence Creek (PR): Lat 37.0673º, Long -119.1948º, Elevation 2015 (masl)Short Hair Creek (SH): Lat 37.0671º, Long -118.9871º, Elevation 2700 (masl)Pit:Site replicate identifierRep: Analytical replicate identifierLat_º: Latitude, units ºLong_º:Longitude, units ºElevation_m:Elevation, units meterMAT_ºC:Mean annual temperature, units Celsius MAP_mm:Mean annual precipitation, units milli metersVegetation: Dominant vegetationsoil_taxonomy: soil family hzn: master soil horizonhzn_designation: master and subordinate soil horizonsdepth_top:upper limit of sampled soil layer, units centimeterdepth_bottom:lowe limit of sampled soil layer, units centimeterd15N_permil:stable isotope composition, del(15)N, units per mil total_N_%:total nitrogen concentration, units percentd13C_permil:stable isotope composition, del(13)C, units per mil tot_C_%:total carbon concentration, units percentC:N:Carbon to nitrogen ratioBD_g/cm3:Bulk density, units grams per centimeter cubeRock_Frac_%:percent of soil mass that is &gt;2mm in sizethickness_cm:thickness of sampled soil layer, units centimeterC_Stock_g/cm2:Soil carbon stock, units grams per centimeter squaredN_Stock_g/cm2:Soil nitrogen stock, units grams per centimeter squared<br>