cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.q573n5ttx
title: The domestication of the wolf larynx – testing the neural crest connection

description: The Neural Crest Domestication Syndrome (NCDS) hypothesis suggests that
 selection pressures for tameness during animal domestication result in a
 down-regulation of neural crest cell migration and proliferation,
 providing a mechanistic explanation to traits commonly observed across
 domesticates. We test the viability of this hypothesis via a derived
 prediction. According to the NCDS hypothesis, neural crest-derived
 structures should be reduced throughout the entire organism in
 domesticated variants compared to their wild ancestors. Here we test this
 prediction by comparing the larynx of the wolf and the domestic dog.
 Anatomical landmarking of the cricoid and thyroid cartilages confirmed
 absolutely and relatively shorter vocal folds and smaller larynges in
 mesocephalic dogs compared to wolves. Additional quantification of the
 laryngeal anatomy shows normal (mesocephalic) dogs to have a smaller
 cricoid diameter and shape-altered thyroid shields. As an exploratory
 extension, we further quantify the concrete anatomical changes to the
 laryngeal cartilages caused by brachycephaly, finding that a flattened
 thyroid shield and ventral cricoid ring fit the symptomatic descriptions
 of laryngeal collapse. Our comparison of larynges of wolves and dogs are
 in line with the NCDS-derived prediction and support the validity of the
 Neural Crest Domestication Syndrome Hypothesis.
description: Data was collected via geometric morphometric analysis of 3D
 models generated from CT scans of larynges
description: # The domestication of the wolf larynx – testing the neural crest
 connection
 [https://doi.org/10.5061/dryad.q573n5ttx](https://doi.org/10.5061/dryad.q573n5ttx) ## Description of the data and file structure This collection includes 3 main items:  1\) A folder including all text files with the landmark coordinate information of every single individual that was measured in the study. The name of the file correlates with the ID of the individual. 2\) Code to run through our entire analysis pipeline in R/R Studio. The first version of the code (20250303_WolfDogLarynxCodeFINAL.R) is the pre-review version. The second version (20250501_WolfDogLarynxCodeFINAL.R) is the updated code with the requested revisions regarding the point shape in the PC plots. 3\) A ply file of a 3D reconstruction of a larynx that is used in the code to visually morph the shape changes on an actual model. We recommend the use of Blender (or any other freeware) capable of opening three dimensional data. ### Files and variables #### File: Landmarks\_20240930.zip **Description:** This folder includes all landmark files. The file names correlate with the individual ID number. #### File: Bone\_Wolf\_Larynx\_CanLup02.labels.ply **Description:** 3D reconstruction of a larynx that is used in the code to shape morph our results. ## Code/software R and R Studio is required (or recommended) to run the code.
DOI: 10.5061/dryad.hqbzkh1tm
title: Data from: Pain persists in mice lacking both Substance P and CGRPα signaling

description: The neuropeptides Substance P and CGRPα have long been thought important
 for pain sensation. Both peptides and their receptors are expressed at
 high levels in pain-responsive neurons from the periphery to the brain
 making them attractive therapeutic targets. However, drugs targeting these
 pathways individually did not relieve pain in clinical trials. Since
 Substance P and CGRPα are extensively co-expressed we hypothesized that
 their simultaneous inhibition would be required for effective analgesia.
 We therefore generated Tac1 and Calca double
 knockout (DKO) mice and assessed their behavior using a wide range of
 pain-relevant assays. As expected, Substance P and CGRPα peptides were
 undetectable throughout the nervous system of DKO mice. To our surprise,
 these animals displayed largely intact responses to mechanical, thermal,
 chemical, and visceral pain stimuli, as well as itch. Moreover, chronic
 inflammatory pain and neurogenic inflammation were unaffected by loss of
 the two peptides. Finally, neuropathic pain evoked by nerve injury or
 chemotherapy treatment was also preserved in peptide-deficient mice. Thus,
 our results demonstrate that even in combination, Substance P and CGRPα
 are not required for the transmission of acute and chronic pain.
description: # Pain persists in mice lacking both Substance P and CGRPα signaling
 [https://doi.org/10.5061/dryad.hqbzkh1tm](https://doi.org/10.5061/dryad.hqbzkh1tm) ## Description of the data and file structure These files encompass the source data for the manuscript. Each workbook contains sheets for each figure panel, including figure supplements. Units and variables are described within the sheets and in the manuscript. cap-Capsaicin, SP-Substance P, veh-Vehicle **FIG 1 – excel file reporting source data for Figure 1 and associated supplements.** These data report the results of neuropeptide sniffer imaging experiments performed in Wild type- WT and Calca double knockout (DKO) mice. All values are reported as Delta F/F0 (quantification of changes in fluorescence). Experimental conditions are different chemical stimuli, and where concentrations are reported, these are in Molar. **FIG 2 – excel file reporting source data for Figure 2 and associated supplements.** These data report the results of a battery of acute pain behavior tests performed on WT and DKO mice, and one Fos experiment. **FIG 3 – excel file reporting source data for Figure 3.** These data report the results of inflammatory pain behavior experiments and neurogenic inflammation measures in WT and DKO mice.  **FIG 4 – excel file reporting source data for Figure 4.** These data report the results of neuropathic pain behavior experiments and Fos measures (Fos puncta in the ipsilateral and contralateral dorsal horn of WT and DKO mice) in WT and DKO mice.
DOI: 10.5061/dryad.0rxwdbsbp
title: CO1 and ITS alignments of bladder grasshopper species

description: Polymorphism in one sex often occurs amongst arthropods, and is often
 linked with alternate mating strategies. Bladder grasshoppers show
 distinct polymorphism resulting in two different male morphs utilizing two
 different mating strategies. Primary males are larger in size and make use
 of acoustic communication to attract mates, while secondary (alternate)
 males are significantly smaller in size, flightless, and do not call,
 making use of a “sneaker” or satellite strategy. Three species of bladder
 grasshoppers have been described (Parabullacris vansoni, Paraphysemacris
 spinosus, and Pneumoracris browni) that only have an alternate male morph
 and no primary male, whereas all other species in the family are described
 as having only a primary male. However, it is now known that both types of
 males occur in at least three species (Bullacris discolor, B.
 membracioides, and B. obliqua). Thus, the validity of the taxonomic
 descriptions for species with no identified primary male has come into
 question. We therefore conducted a phylogenetic analysis to examine the
 genetic relationships between primary and secondary males for all species
 where secondary males are documented or suspected to occur. This was done
 using both mitochondrial (COI) and nuclear (ITS) DNA markers. We confirm
 that dimorphic males are indeed conspecific for the species observed to
 have both primary and alternate males. We also demonstrate that
 Parabullacris vansoni, Pneumoracris browni and Paraphysemacris spinosus
 are invalid taxa as they are conspecific alternate male morphs of B.
 unicolor, Peringueyacris namaqua and Physemacris variolosa, respectively.
description: Specimens used for this study were from previous collections that
 had been preserved in 90–100% ethanol. Collection dates span many
 years.  DNA extraction PCR and gel
 electrophoresis Sequences alignments and phylogenetic
 analysis
description: # CO1 and ITS alignments of bladder grasshopper species
 [https://doi.org/10.5061/dryad.0rxwdbsbp](https://doi.org/10.5061/dryad.0rxwdbsbp) ## Description of the data and file structure Bladder grasshoppers collected over decades, preserved in ethanol, were used in this genetic study.  ### Files and variables #### File: CO1_alignment.fas **Description:** 71 sequences successfully extracted for phylogenetic analysis of the COI gene marker. This fasta file is the alignment of those sequences.  #### File: ITS_alignment.fas **Description:** 63 sequences successfully extracted for phylogenetic analysis of the ITS gene marker. This fasta file is the alignments of those sequences. ## Code/software BioEdit
DOI: 10.15468/dl.8xprs9
title: Occurrence Download

description: A dataset containing 296 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Corynosoma semerme",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 296 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004283-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14656895
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5061/dryad.9cnp5hqwj
title: Isoprene deters insect herbivory by priming plant hormone responses

description: Isoprene, emitted by some plants, deters insect herbivory. However, the
 associated biochemical and physiological responses that confer herbivory
 resistance remain unknown. We used tobacco plants engineered to emit
 isoprene (IE) and the non-emitting control (NE) to interpret
 isoprene-mediated defense against herbivory in plants. Hornworm larvae
 raised on IE plants exhibited stunted growth compared to those raised on
 NE plants. Worms preferred to feed on NE rather than IE leaves, indicating
 deterrent effects of isoprene on insect feeding. Worm feeding induced a
 greater increase in jasmonic acid (JA), a crucial hormone for insect
 resistance, in IE leaves compared to NE leaves. Assimilation rates were
 stably maintained in IE plants suggesting a protective role of isoprene in
 preserving photosynthetic efficiency during insect herbivory.
 Wound-induced increase in isoprene emission correlated with the elevation
 of key metabolites of the isoprene biosynthesis pathway. Our results
 highlight JA-priming functions of isoprene and provide new insights into
 isoprene-mediated defense against insect herbivory.
description: # Isoprene deters insect herbivory by priming plant hormone responses
 [https://doi.org/10.5061/dryad.9cnp5hqwj](https://doi.org/10.5061/dryad.9cnp5hqwj) ## Description of the data and file structure The goal of this project was to identify the underlying physiological and biochemical changes in isoprene-emitting (IE) plants during insect herbivory to understand why IE plants are more pest-resistant. ### Files and variables * Fig 1b: Quantification of white fly infestation per cm2 leaf area in NE and IE plants * Fig 2c: Comparison of hornworm larval weight reared on IE and NE plants for 10 days (note: 16 worms were recovered from NE plants at the end of the experiment, hence last three rows have NA) * Fig 2e: Quantification of leaf consumption 90 min after placing worms on a pair of IE and NE leaf * Fig 3a-c: Changes in assimilation rates (*A)*, intercellular CO2 concentration (*Ci)*, and stomatal conductance (*gsw) *recorded during worm feeding in NE and IE leaves. * Fig 4: Change in levels of hormones JA, JA-Ile, SAG, and ABA (JA- Jasmonic acid, JA-Ile- Jasmonic acid isoleucine; SAG- Salicylic acid glucoside ; ABA- Abscisic acid) 1h post feeding * Fig 5a: Change in isoprene emission in NE and IE leaves after wounding. * Fig 5b-j: Change in MEP pathway metabolites and hormone levels in wounded IE leaves compared to unwounded (control) leaves. DXP- 1-deoxy-d-xylulose-5-phosphate; MEP-  methylerythritol 4-phosphate; CDP-ME-  4-(cytidine-5’-diphospho)-2-C-methyl-D-erythritol; MEcDP- 2-C-methyl-d-erythritol-2,4-cyclodiphosphate; HMBDP- 4-hydroxy-3-methylbut-2-enyl-diphosphate; DMADP- dimethylallyl diphosphate and hormones JA- Jasmonic acid; JA-Ile- Jasmonic acid isoleucine; SAG- Salicylic acid glucoside ; ABA- Abscisic acid  Note: Metabolite and hormone data marked as "ND" were below the limit of detection of the instrument/method used. ## Code/software NA
DOI: 10.5061/dryad.g1jwstr2s
title: Relationship between c-reactive protein-albumin ratio and prognosis in pediatric patients with severe burns

description: C-reactive protein (CRP) is a widely requested acute-phase protein. This
 study aimed to investigate the relationship between albumin, CRP, and
 CRP-albumin ratio values and hospital length of stay (LOS) in children
 with severe burns. A total of 150 pediatric patients who were treated in
 our hospital's burns clinic or burns intensive care unit due to
 third- and fourth-degree burns between January 2019 and September 2023
 were included in the study. The mean CRP-albumin ratio was significantly
 lower in those hospitalized for 10 days or less than that in those
 hospitalized for a longer period (p&lt;0.001). The rates of patients
 with high CRP-albumin ratio in those hospitalized for 21-30 days and more
 than 40 days were found to be significantly higher than the other groups
 (p&lt;0.001). Hospital LOS was positively and significantly related to
 CRP-albumin ratios (p&lt;0.001; r=0.529). In children with severe
 burns, low albumin levels, high CRP levels, and high CRP-albumin ratios at
 hospital admission may be related to clinical presentation and hospital
 LOS.
description: # Relationship Between C-reactive Protein-Albumin Ratio and Prognosis in
 Pediatric Patients with Severe Burns
 [https://doi.org/10.5061/dryad.g1jwstr2s](https://doi.org/10.5061/dryad.g1jwstr2s) ## Description of the data and file structure **Explanations of abbreviations in the dataset** **Gender:** The genders of the participants in the study **HospStayGrp:** Grouping of patients based on their length of hospital stay as 0–10 days and &gt;10 days **HospStayGrp1:** Grouping of patients based on their length of hospital stay as 0–10 days, 11–20 days, 21–30 days, 31–40 days, and &gt;40 days **HospStayGrp2:** Grouping of patients based on their length of hospital stay as 0–20 days and &gt;20 days **TotalProtein:** The total serum protein levels of the patients **Albumin:** The serum albumin levels of the patients **AlbuminGroup:** Grouping of patients based on their serum albumin levels as normal/low and high. **Crp:** The serum C-reactive protein (CRP) levels of the patients. **CrpGroup:** Grouping of patients based on their serum C-Reactive Protein (CRP) levels as normal or high. **CrpAlbumin:** The ratio of patients' serum C-reactive protein (CRP) levels to their serum albumin levels **CrpAlbuminGroup:** Grouping of patients based on their serum C-Reactive Protein (CRP) to serum albumin ratio as low or highFile: Data_-*Burns*.sav **Description:** SPSS data of patients ## Code/software SPSS 25.0 software (IBM SPSS, Chicago, IL, USA)
DOI: 10.5281/zenodo.18407778
title: Table 1 in A new species of the Neoplecostomine catfish Pareiorhaphis (Siluriformes: Loricariidae) from the Coastal basins of Espírito Santo, Eastern Brazil

description: Table 1. Morphometric and meristic data of Pareiorhaphis ruschii. Values are given as percents of standard length or head length. H = holotype, n = number of specimens, and SD = Standard Deviation.
HnLowHighMeanSDStandard Length (mm)84.83051.796.766.4-Percent of Standard LengthHead length34.43031.835.233.30.84Predorsal length44.53042.745.744.30.75Postdorsal length41.93038.441.940.40.91Preanal length67.13064.282.767.13.22Preadipose length82.23080.484.881.81.06Dorsal-fin spine length23.63020.924.622.20.96Anal-fin spine length16.03013.617.515.50.83Pectoral-fin spine length21.33018.923.020.71.04Ventral-fin spine length26.33021.826.423.61.23Upper caudal-fin ray23.32823.327.825.11.06Lower caudal-fin ray25.22824.828.526.50.94Adipose-fin spine length7.8285.88.57.60.68Adipose to caudal fin distance18.73015.520.018.20.96Trunk length16.03015.017.816.70.68Abdominal length25.83025.728.727.00.91Cleithral width28.63027.630.828.90.72Body depth at dorsal-fin origin21.73018.122.820.31.09Body width at dorsal-fin origin23.03019.724.722.01.41Body width at anal-fin origin13.13013.116.415.00.79Caudal peduncle length32.93030.235.033.21.17Caudal peduncle depth9.5308.910.610.00.44Caudal peduncle width5.3304.36.25.50.40Percent of Head LengthSnout length61.73058.464.961.31.55Orbital diameter13.63012.216.114.60.90Interorbital width26.13026.131.528.91.25Head depth55.43040.559.454.73.32Mandibular ramus20.53019.722.220.90.64MeristicsPremaxillary teeth left56.029477257.36.47Premaxillary teeth right58.027496757.75.35Dentary teeth left57.026447157.05.94Dentary teeth right58.027457056.26.60Plates in median lateral series left27.027252826.30.76Plates in median lateral series right26.027252826.20.85Plates at dorsal-fin base6.030676.00.18Plates between dorsal and adipose8.030787.70.47Plates between adipose and caudal3.030243.40.62Plates at anal-fin base3.030232.80.38Plates between anal and caudal10.030101211.10.52Pre-adipose azygous plates7.0296107.51.09
description: Published as part of Pereira, Edson H. L., A., Pablo Lehmann & Reis, Roberto E., 2012, A new species of the Neoplecostomine catfish Pareiorhaphis (Siluriformes: Loricariidae) from the Coastal basins of Espírito Santo, Eastern Brazil, pp. 542 in Neotropical Ichthyology 10 (3) on page 542, DOI: 10.1590/S1679-62252012000300006, http://zenodo.org/record/10660365
DOI: 10.5281/zenodo.18407777
title: Table 1 in A new species of the Neoplecostomine catfish Pareiorhaphis (Siluriformes: Loricariidae) from the Coastal basins of Espírito Santo, Eastern Brazil

description: Table 1. Morphometric and meristic data of Pareiorhaphis ruschii. Values are given as percents of standard length or head length. H = holotype, n = number of specimens, and SD = Standard Deviation.
HnLowHighMeanSDStandard Length (mm)84.83051.796.766.4-Percent of Standard LengthHead length34.43031.835.233.30.84Predorsal length44.53042.745.744.30.75Postdorsal length41.93038.441.940.40.91Preanal length67.13064.282.767.13.22Preadipose length82.23080.484.881.81.06Dorsal-fin spine length23.63020.924.622.20.96Anal-fin spine length16.03013.617.515.50.83Pectoral-fin spine length21.33018.923.020.71.04Ventral-fin spine length26.33021.826.423.61.23Upper caudal-fin ray23.32823.327.825.11.06Lower caudal-fin ray25.22824.828.526.50.94Adipose-fin spine length7.8285.88.57.60.68Adipose to caudal fin distance18.73015.520.018.20.96Trunk length16.03015.017.816.70.68Abdominal length25.83025.728.727.00.91Cleithral width28.63027.630.828.90.72Body depth at dorsal-fin origin21.73018.122.820.31.09Body width at dorsal-fin origin23.03019.724.722.01.41Body width at anal-fin origin13.13013.116.415.00.79Caudal peduncle length32.93030.235.033.21.17Caudal peduncle depth9.5308.910.610.00.44Caudal peduncle width5.3304.36.25.50.40Percent of Head LengthSnout length61.73058.464.961.31.55Orbital diameter13.63012.216.114.60.90Interorbital width26.13026.131.528.91.25Head depth55.43040.559.454.73.32Mandibular ramus20.53019.722.220.90.64MeristicsPremaxillary teeth left56.029477257.36.47Premaxillary teeth right58.027496757.75.35Dentary teeth left57.026447157.05.94Dentary teeth right58.027457056.26.60Plates in median lateral series left27.027252826.30.76Plates in median lateral series right26.027252826.20.85Plates at dorsal-fin base6.030676.00.18Plates between dorsal and adipose8.030787.70.47Plates between adipose and caudal3.030243.40.62Plates at anal-fin base3.030232.80.38Plates between anal and caudal10.030101211.10.52Pre-adipose azygous plates7.0296107.51.09
description: Published as part of Pereira, Edson H. L., A., Pablo Lehmann & Reis, Roberto E., 2012, A new species of the Neoplecostomine catfish Pareiorhaphis (Siluriformes: Loricariidae) from the Coastal basins of Espírito Santo, Eastern Brazil, pp. 542 in Neotropical Ichthyology 10 (3) on page 542, DOI: 10.1590/S1679-62252012000300006, http://zenodo.org/record/10660365
DOI: 10.25919/yy7t-eq20
title: Snails as vectors of parasites and pathogens in Australia: determining the parasitomes of native and invasive snail species

description: Snails are invasive species that can negatively impact both the environment and agriculture. They commonly serve as hosts for a variety of pathogens and parasites, acting as accidental, intermediate, or definitive hosts for organisms that may be transmitted to other molluscs, invertebrates, or vertebrates, including humans. Snails can pose significant biosecurity risks to the environment, agriculture, and both animal and human health, particularly when they spread to new areas carrying novel variants or exotic pathogens that may infect naïve hosts. Due to their ability to conceal themselves in cracks and crevices, snails are often difficult to detect and intercept. Despite this, they are regularly intercepted at Australia’s borders. This dataset was generated to investigate the pathogens and parasites transmitted by snails, as well as their associated microbiomes.
The dataset presented here comprises RNA-seq raw reads generated from whole snail tissue, provided in FASTQ format. Additionally, assembled transcripts for each library are included in FASTA format. This data may be valuable for downstream analyses, including studies on gene expression, host parasite interactions, or microbiome composition.
Some libraries included in this dataset, have been deposited in an external repository and are publicly available. DRYAD. Published May 28, 2025 on Dryad. https://doi.org/10.5061/dryad.xgxd254s0
DOI: 10.15468/dl.agdd8k
title: Occurrence Download

description: A dataset containing 203 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Corynosoma strumosum",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 203 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004284-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.