cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/4zsggk9swp
title: Teaching Academic Staff to Implement Interactive Graphics for their Courses – A Contribution to Digital Education during the COVID-19 Pandemic

description: Questionnaires on Online-Workshop to teach academic staff to Implement Interactive Graphics for their Course. Item of questionnaire before workshop: 1. Age 2. Gender 3. Have you already used digital media for your class (video-conferences tools such as Microsoft-Teams and Zoom are not meant)? 4. For how much time (in percent) is it reasonable to use digital teaching tool in higher education? 5. I find the increasing use of digital teaching media in higher education for students … 6. I find the increasing use of digital teaching media in higher education for lecturers… 7. Interactive graphics facilitate teaching 8. Interactive graphics facilitate learning 9. I´m experienced in programming. 10. I have knowledge in using R. 11. I have already used interactive graphics before. 12. The invention of the letterpress in the 15th century reduced in my opinion the need for traditional face-to-face class 13. The invention of the internet in the 20th century will fundamentally promote a permanent shift into digital teaching in higher education. 14. The COVID-19 pandemic will fundamentally promote a permanent shift into digital teaching in higher education. Item of questionnaure after workshop 1. Age 2. Gender 3. Interactive graphics facilitate teaching 4. Interactive graphics facilitate learning 5. I can imagine using interactive graphics in my classes in the future. 6. I can imagine programming interactive graphics for my classes in the future. 7. The workshop promoted my interest for using digital teaching media 8. Further comments and ideas
DOI: 10.17632/6ygmf2g2nb
title: Sphingosine kinase 1 aggravates liver fibrosis by mediating macrophage recruitment and polarization

description: This data includes uncropped versions of immunoblots, source Data and 10X Single-Cell RNA Sequencing Datasets.
DOI: 10.17632/8gprnvby4h
title: Machine learning for the prediction of preoxygenation technique in trauma 

description: Background Preoxygenation can be achieved best by non-invasive ventilation techniques (NIV).
Objective With the help of machine learning, the decision-making process against or in favour of NIV for preoxygenation in severely injured preclinical patients shall be evaluated.
Methods A registry-based, retrospective analysis in preclinical adult trauma patients in south-western Germany between 2018 to 2020 was conducted. Attributes considered were the initial vital signs, Glasgow Coma Scale, airway devices, administered medication, description of difficult airway, emergency interventions, shock index, age and pre emergency status. A decision tree model (REPTree) and two Bayesian network (BN) were created, one with all and the other with the attributes occurring in the decision tree. 
Results 992 datasets with 333 cases of NIV (33%) were identified. Main splitting points in the decision tree model were the attributes rhonchus and bronchial spasm, videolaryngoscopy, respiratory rate, heart rate, age, oxygen saturation and head injury. The area under the receiver operating characteristics was between 0.97 (original BN; 95% CI, 0.96-0.97) and 0.93 (REPTree, 95% CI, 0.92-0.93). For the prediction, the precision-recall area was 0.96 (BN, 95% CI, 0.96-0.97) and 0.88 (REPTree, 95% CI, 0.87-0.89) and for exclusion 0.96 (BN, 95% CI, 0.96-0.97) and 0.94 (REPTree, 65% CI, 0.93-0.94). The simplified BN performed equally to the original BN.
Conclusion The presented models demonstrated a feasibility for modeling decision making as well as an excellent performance. An expended model should contain internal and neurological patients as well as the effectiveness of the chosen method and could therefore support emergency medical crews.


Files:
Supplement Bayesian Network max 3 nodes XML BIF.xml
•	XML data file with all nodes and probabilities of the final Bayesian network with a maximum of 3 parental nodes that can be implemented in WEKA
Supplement Simplified Bayesian Network max 3 nodes XML BIF.xml
•	XML data file with all nodes and probabilities of the simplified Bayesian network with a maximum of 3 parental nodes that can be implemented in WEKA
DOI: 10.17632/9wjy3mwgbw
title: Distributor

description: Details of the distributors
DOI: 10.17632/gwwndhsfbh
title: Coral Bleaching in Malvan, Eastern Arabian Sea

description: Coral bleaching, SST, NIO 3.4, and DMI index data
DOI: 10.17632/rcmpgkzdz2
title: Asymmetries among soil fungicide residues, nitrous oxide emissions and microbiomes regulated by nitrification inhibitor at different moistures

description: Carbendazim is a widely used fungicide but causes widespread residues in soils and crops, and nitrous oxide (N2O) is one of the dominant greenhouse gases. The 3,4-dimethylpyrazole phosphate (DMPP), a nitrification inhibitor, might simultaneously affect fungicide dissipation and N2O emission. In this study, we applied the DMPP to agricultural soils contaminated with carbendazim under 60% and 90% soil water holding capacity (WHC) to quantify the carbendazim residues and N2O emission at various sampling times. The comprehensive linkages among N2O emission, microbial activities, community diversities, compositions and functional genes were quantified. Under 90% WHC, the DMPP applications significantly reduced carbendazim residues by 23.62% and 54.82% on days 10 and 20, respectively. The DMPP application also reduced soil N2O emission by 17.69% under 60% WHC and 98.68% under 90% WHC. The carbendazim residue was negatively related to soil NH4+-N, urease activity, and ratio of Bacteroidetes, Thaumarchaeota and Nitrospirae under 90% WHC, and the N2O emission rate was negatively related to NH4+-N content and relative abundance of Acidobacteria under the 60% WHC condition. In the whole (60% and 90% WHC together), the hao gene was negatively related to the carbendazim residue but positively related to the N2O emission rate. The asymmetric linkages among the carbendazim residue, N2O emission, microbial community and functional gene abundance were regulated by the DMPP application and soil moisture. The DMPP application had the promising potential to simultaneously reduce ecological risks of fungicide residues and N2O emissions via altering soil abiotic properties, microbial activity, and community and functional genes.
DOI: 10.17632/rrc8zh4h3w
title: Video Blogging_2020_speaking and SE

description: The students’ speaking performance were scored by two raters The students’ self-efficacy were acquired through an online survey The SPSS outputs were acquired by performing statistical analysis using SPSS program
DOI: 10.17632/yjkr647mzb
title: Left angular gyrus disconnection impairs multiplication fact retrieval, descriptive data and scripts

description: This script and dataset belongs to a project examining which white matter disconnections following a unilateral stroke lesion lead to deficits in single-digit multiplication. First, unilateral voxel-based lesion symptom mapping was carried out on white disconnection maps using NiiStat (https://github.com/neurolabusc/NiiStat). White matter disconnection maps were created using the Lesion Quantification Toolkit (Griffis, J. C., Metcalf, N. V., Corbetta, M., & Shulman, G. L. (2021). Lesion Quantification Toolkit: A MATLAB software tool for estimating grey matter damage and white matter disconnections in patients with focal brain lesions. NeuroImage: Clinical, 30, 102639.) and the HCP-842 (Yeh, F. C., Panesar, S., Fernandes, D., Meola, A., Yoshino, M., Fernandez-Miranda, J. C., ... & Verstynen, T. (2018). Population-averaged atlas of the macroscale human structural connectome and its network topology. Neuroimage, 178, 57-68.) as the underlying white matter atlas. Results indicate significant voxels in the left arcuate fasciculus, temporopontine tract, and U-fibers. It was concluded that disconnection of these areas lead to a multiplication deficit. The results can be found in the folder "NiiStat results". A second analysis followed a disconnectome approach, whereby the disconnection of brain parcels was examined. Brain parcels were derived from the brainnetome atlas (Fan, L., Li, H., Zhuo, J., Zhang, Y., Wang, J., Chen, L., ... & Jiang, T. (2016). The human brainnetome atlas: a new brain atlas based on connectional architecture. Cerebral cortex, 26(8), 3508-3526.). A permutation analysis identified disconnections that were significantly associated with a multiplication deficit; once at a threshold of p = .05, and once at p = .01. The results can be found in the folders "Edges_p_05" and "Edges_p_01". Results suggest that especially disconnections of the left thalamus as well as the left IPS are associated with a multiplication deficit.
The newest folder includes new analyses, as we created custom R-scripts to examine our data with bayesian statistics.
DOI: 10.17632/32mmm3xk3v
title: Table S4 A study of Nonstructural protein 1 of SARS-CoV-2 is a potent pathogenicity factor redirecting host protein synthesis machinery toward viral RNA. Yuan et al

description: . DAVID pathway analysis of Nsp1 differentially expressed gene sets Sup table 4.1 Functional clustering of Nsp1 vs Vector Control highly downregulated genes (q &lt; 1e-30) Sup table 4.2 Functional clustering of Nsp1 vs Nsp1 Mutant highly downregulated genes (q &lt; 1e-30) Sup table 4.3 Functional clustering of Nsp1 vs Vector Control highly upregulated genes (q &lt; 1e-30) Sup table 4.4 Functional clustering of Nsp1 vs Nsp1 Mutant highly upregulated genes (q &lt; 1e-30) Sup table 4.5 Biological processes enrichment of Nsp1 vs Vector Control highly downregulated genes (q &lt; 1e-30) Sup table 4.6 Biological processes enrichment of Nsp1 vs Nsp1 Mutant highly downregulated genes (q &lt; 1e-30) Sup table 4.7 Biological processes enrichment of Nsp1 vs Vector Control highly upregulated genes (q &lt; 1e-30) Sup table 4.8 Biological processes enrichment of Nsp1 vs Nsp1 Mutant highly upregulated genes (q &lt; 1e-30) Sup table 4.9 Gene list of Nsp1 vs Vector Control highly downregulated genes (q &lt; 1e-30) Sup table 4.10 Gene list enrichment of Nsp1 vs Nsp1 Mutant highly downregulated genes (q &lt; 1e-30) Sup table 4.11 Gene list enrichment of Nsp1 vs Vector Control highly upregulated genes (q &lt; 1e-30) Sup table 4.12 Gene list enrichment of Nsp1 vs Nsp1 Mutant highly upregulated genes (q &lt; 1e-30) Sup table 4.13 Gene list of Nsp1 vs Vector Control all downregulated genes (q &lt; 0.01) Sup table 4.14 Gene list of Nsp1 vs Vector Control all upregulated genes (q &lt; 0.01)
DOI: 10.17632/37cj8szykw
title: In Lands of Foreign Currency Credit, Bank Lending Channels Run Through?

description: Journal of International Economics, In Lands of Foreign Currency Credit, Bank Lending Channels Run Through?, Ongena, Schindele, Vonnak
DOI: 10.17632/3wtwxhzzvp
title: LINF_350006500

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/4bgszb5vs6
title: Data for: Exposure to juvenile males during development suppresses female capacity for parthenogenesis in the phasmid Extatosoma tiaratum

description: These three data files contain raw data of (1) juvenile female behaviours, (2) adult female behaviours, and (3) components of female (asexual) reproductive fitness. Datasets are organised in long format (i.e., one row per subject).
DOI: 10.17632/6rb2sfz8dk
title: Supplementary material : The role of forests, peatlands and lakes on catchment response to rainfall events in boreal landscapes

description: Folder "data" contains all data needed to produce figures 3, 4, 5, 7, and 8 and supplementary figures using the "R code" script
DOI: 10.17632/848nfnn2m5
title: Data availability - Influence of aluminium powder aging on Directed Energy deposition

description: This is the supplementary material related to the paper "Influence of aluminium powder aging on Directed Energy deposition" published in Materials & Design (2022). It contains all of the raw data used for the different figures.
DOI: 10.17632/8j6vg4d457
title: Insure or Unsure? The Role of Negative and Positive Basis Risk in Weather Index Insurance Uptake in Kenya

description: This repository holds publicly available weather data which has been extracted from .tiff and NetCDF to Stata format at points over Kenya. The original source of the rainfall data is:
http://www.climatedatalibrary.cl/SOURCES/.NOAA/.NCEP/.CPC/.FEWS/.Africa/.DAILY/.ARC2/.daily/index.html?Set-Language=en

The original source of the temperature data is:
https://www.rccap.org/data/item/592e5bcf82f97

It also holds the replication files for the paper titled: Insure or Unsure? The Role of Negative and Positive Basis Risk in Weather Index Insurance Uptake in Kenya, authored by S J Vosper and F Cecchi. The remaining data files to run these replication files need to be requested from the authors as this contains proprietary data of the insurance provider. This requires the appropriate permission requests to be made. This can be done by contacting Francesco Cecchi on: francesco.cecchi@wur.nl
DOI: 10.17632/b8tgxd4dp2
title: data_Cataract surgery affects the need for vitreoretinal surgery in AMD patients

description: data_Cataract surgery affects the need for vitreoretinal surgery in AMD patients
DOI: 10.17632/bxc4vp3232
title: Successful “3T therapy” for anti-MDA5 positive dermatomyositis: A case series

description: Mendeley supplementary figure 1. “Changes in chest CT images of patient 1.”
Mendeley supplementary figure 2. “The (A) clinical course and (B) serum ferritin levels of patient 2.”
Mendeley supplementary figure 3. “Changes in chest CT images of patient 2.”
DOI: 10.17632/ckw7gzrvx6
title: Immunolipidomics reveals a globoside network during the resolution of pro-inflammatory response in human macrophages

description: Toll-like receptor 4 (TLR4)-mediated changes in macrophages reshape intracellular lipid pools to coordinate an effective innate immune response. Although this has been previously well-studied in different model systems, it remains incompletely understood in primary human macrophages. Here we report time-dependent lipidomic and transcriptomic responses to lipopolysaccharide (LPS) in primary human macrophages from healthy donors. We grouped the variation of ~200 individual lipid species measured by LC-MS/MS into eight temporal clusters. Among all other lipids, glycosphingolipids (glycoSP) and cholesteryl esters (CE) showed a sharp increase during the resolution phase (between 8h or 16h post LPS). GlycoSP, belonging to the globoside family (Gb3 and Gb4), showed the greatest inter-individual variability among all lipids quantified. Integrative network analysis between GlycoSP/CE levels and genome-wide transcripts, identified Gb4 d18:1/16:0 and CE 20:4 association with subnetworks enriched for T cell receptor signaling (PDCD1, CD86, PTPRC, CD247, IFNG) and DC-SIGN signaling (RAF1, CD209), respectively. Our findings reveal Gb3 and Gb4 globosides as sphingolipids associated with the resolution phase of inflammatory response in human macrophages.
DOI: 10.17632/d4tt3n2mrv
title: Multipollutant Data

description: Data used for optimisation
DOI: 10.17632/g7gsjb8tkg
title: LINF_020007000

description: phosphoglycan beta 1-3 galactosyltransferase
DOI: 10.17632/gr4w4ty95b
title: Appendix A-Modeling potential causal mechanisms in process safety management (PSM) systems

description: Appendix A-Modeling potential causal mechanisms in process safety management (PSM) systems
DOI: 10.17632/h9kgc3zpj2
title: The role of Ca-phosphates and silicates in the storage and transport of phosphorus at the upper-to-lower mantle transition: an experimental study to 25 GPa in a model peridotitic bulk composition

description: EPM single point analyses of all coexisting phases (bridgmanite, clinoenstatite, davemaoite, ferropericlase, forsterite, garnet, quenched liquid, ringwoodite, tuite and wadsleyite) in a phosphorus enriched peridotite at upper to lower mantle transition zone conditions. 
Experiments were performed in a P-T range of 15-25 GPa and between 1600 and 1800°C. 
Additional SIMS analyses of the phosphorus content in bridgmanite, high pressure clinoenstatite and ferropericlase.
DOI: 10.17632/hchx5kjxn2
title: Supplemental Data for Models for Factors Influencing Pathogen Survival in Low Water Activity Foods from Literature Data are Highly Significant but Show Large Unexplained Variance. Matthew J. Igo and Donald W. Schaffner

description: Raw data and R code for the manuscript Models for Factors Influencing Pathogen Survival in Low Water Activity Foods from Literature Data are Highly Significant but Show Large Unexplained Variance.
DOI: 10.17632/hmg3knz6kz
title: Data to Accompany: Epidemiological Patterns of Cannabis- and Substance- Related Congenital Gastrointestinal Anomalies Across Europe 2010-2019: Space-Time and Causal Inference Study.

description: Data accompany paper of above title.
DOI: 10.17632/j26ht6sy3p
title: Relative infectivity of the SARS-CoV-2 Omicron variant in human alveolar cells

description: Without single-cell bam files, all metadata used for study are uploaded. 
1. Metadata for infected alveolar cells and empty wells. (final_cell_metadata.csv and final_emptywell_metadata.csv)
2. Live virus fraction over experimental batches from H to K.  (live_virus_assay.xlsx)
3. SARS-CoV-2 expression profile by two difference single-cell RNA seq methods.  (samtools_depth_final.csv)
4. Expression of alveolar type-2 cell marker genes and SARS-CoV-2 related genes. (20221004_fig_dat_per_10k.tsv)
5. Table S1. A full list of clonal genomic mutations of SARS-CoV-2 variants. Related to Figure 1
DOI: 10.17632/kdyg4yzb48
title: LINF_240024800

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/ktxmjgzzgr
title: proteomics

description: Lactylation-driven FTO-mediated vascular endothelial tip cell formation and its crosstalk with pericyte and microglia aggravate diabetes-induced microvascular dysfunction
DOI: 10.17632/nrgmn3rfyr
title: Undertreatment of onychomycosis in a cross-sectional analysis of NAMCS 2007-2016 - Supplemental Methods and Figures

description: Supplemental Methods and Figures
DOI: 10.17632/p84rk2n4j6
title: data

description: data
DOI: 10.17632/rkznnp6r66
title: Data for: Potential of FAST (Floating Absorber for Safety at Transient) as a Solution for Positive Coolant Temperature Coefficient in Sodium-cooled Fast Reactors

description: Transient analysis results of FAST considering three ATWS (Anticipated Transient without Scram) scenarios: ULOF (Unprotected loss of flow), ULOHS (Unprotected loss of heat sink), and UTOP (Unprotected Transient overpower).
DOI: 10.17632/vxhc6572s7
title: AFM analysis of erionite and offretite crystals: In-situ AFM dissolution movies

description: Deposited here are videos of AFM dissolution experiments on offretite-erionite intergrowths. Further information on videos is given in the file named 'Video_information'. The data presented here accompanies work outlined in the chapter of the same name in the thesis "A Computational and Atomic Force Microscopy Study on the Crystallisation of Disordered Zeolites" by Mollie Trueman.
DOI: 10.17632/wxxj27ddsy
title: immune gene data

description: immune gene data
DOI: 10.17632/ywt9mf6xtn
title: Construction of a three-component regulatory network of transcribed ultraconserved regions for the identification of prognostic biomarkers in gastric cancer

description: Background: Altered expression and functional roles of the transcribed ultraconserved regions (T-UCRs), as genomic sequences with 100% conservation between the genomes of human, mouse, and rat, in the pathophysiology of neoplasms has already been investigated. Nevertheless, the relevance of the functions for T-UCRs in gastric cancer (GC) is still the subject of inquiry. In the current study, we first used a genome-wide profiling approach to analyze the expression of T-UCRs in GC patients. Then, we constructed a three-component regulatory network and investigated potential diagnostic and prognostic values of the T-UCRs.
Materials and Methods: The Cancer Genome Atlas Stomach Adenocarcinoma (TCGA-STAD) dataset was used as a resource for the RNA-sequencing data. FeatureCounts was utilized to quantify the number of reads mapped to each T-UCR. Differential expression analysis was then conducted using DESeq2. In the following, interactions between T-UCRs, miRNAs, and mRNAs were combined into a three-component network. The R Survival package was utilized to identify survival-related significantly differentially expressed T-UCRs (DET-UCRs). Using an in-house cohort of GC tissues, expression of two DET-UCRs was furthermore experimentally verified.
Results: Our results showed that thirty-four T-UCRs were dysregulated in TCGA-STAD tumoral samples compared to non-tumoral counterparts. The three-component network was composed of 34 DET-UCRs, 275 miRNAs, and 796 mRNAs nodes. Five T-UCRs including: uc.8, uc.169, uc.342, uc.360, and uc.417 were significantly correlated with the overall survival of GC patients. While no expression of uc.232 was observed in our in-house cohort of GC tissues, uc.343 showed an increased expression, although not statistically significant, in gastric tumoral tissues which was consistent with the bioinformatics analysis results.
Conclusion: The constructed three-component regulatory network of T-UCRs in GC presents a comprehensive understanding of the underlying gene expression regulation processes involved in tumor development and can serve as a basis to investigate potential prognostic biomarkers and therapeutic targets.
DOI: 10.17632/zkzrpph946
title: H3K4 methylation by SETD1A/BOD1L facilitates RIF1-dependent NHEJ. Bayley et al.

description: Raw imaging and immunoblotting data for this manuscript.
DOI: 10.17632/2y7zpkwbcj
title: hCINAP controls lineage differentiation of embryonic stem cells by regulating NEDD4 liquid-liquid phase separation-mediated YAP1 activation

description: In the present study, we demonstrate that YAP1 is activated by NEDD4-LLPS during mESCs differentiation to ectoderm layers, and that mCINAP determines the differentiation fates of mESCs by regulating NEDD4 LLPS-mediated YAP1 activation. mCINAP depletion promotes partitioning of cytoplasmic NEDD4 condensates with NLK and YAP1 proteins, thereby promoting YAP1 activation by enhancing its phosphorylation at Ser128. Thus, activation of YAP1 by mCINAP depletion impairs mESCs differentiation into the endoderm lineage. These findings suggest that hCINAP is an important negative regulator of YAP1 and is essential for ESC lineage differentiation.
This dataset contains the raw WB data of our study.
DOI: 10.17632/3ntdt8b8g9
title: Data-PAID-D-23-01364R1

description: It is the raw data of the research titled "The relationship between narcissistic self dimensions and temperament types in healthy adults"
DOI: 10.17632/5dbtgpgc36
title: Repeat scintillation measurements (0-96 h) of 14CO2 trapped in NaOH of varying molarity and CO2 saturation using five different scintillation cocktails

description: Repeat scintillation measurements (0-96 h) of vials containing mixtures of NaOH samples (with 14CO2) and five different scintillation cocktails. The NaOH samples resemble samples typically obtained in experiments investigating the mineralization of 14C-labelled substances using base trapping of CO2. The NaOH is either 1 M or 0.35 M and saturated with CO2 either 5% or 50%. NaOH sample and scintillation cocktails are mixed at two different ratios.
DOI: 10.17632/5tjjs282s8
title: AWJM

description: AWJM Data
DOI: 10.17632/79dbmrymh7
title: Effects of Si addition in Fe45-xMn30Cr10Co15Six high entropy alloys

description: Data o manuscript: Effects of Si addition on the martensitic transformation, structural and thermodynamic
aspects in Fe45-xMn30Cr10Co15Six high entropy alloys
DOI: 10.17632/b5sj3r5mzw
title: Bitcoin

description: Bitcoin data
DOI: 10.17632/dgwkj7rnfm
title: ПОДГОТОВКА К ЗАЩИТЕ МАГИСТЕРСКОЙ ДИССЕРТАЦИИ

description: ПОДГОТОВКА К ЗАЩИТЕ МАГИСТЕРСКОЙ ДИССЕРТАЦИИ