cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.tped54
title: Occurrence Download

description: A dataset containing 230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Davallia trichomanoides Blume"
 ]
}

 The dataset includes 230 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046321-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mup5k3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Doratopsylla coreana hubeiensis Liu Jingyuan, Wang Dunqing & Yang Qiren, 1994",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009227-231120084113126/datasets/export for details.
DOI: 10.15468/dl.smat8t
title: Occurrence Download

description: A dataset containing 1554 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Asclepias oenotheroides Cham. & Schltdl.",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-124.67 8.28,-124.67 39.74,-69.57 39.74,-69.57 8.28,-124.67 8.28))"
 ]
}

 The dataset includes 1554 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089997-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xu4upy
title: Occurrence Download

description: A dataset containing 3960 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Harpia harpyja (Linnaeus, 1758)"
 ]
}

 The dataset includes 3960 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0168176-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zrpdtk
title: Occurrence Download

description: A dataset containing 540 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Miconia silviphila Michelang."
 ]
}

 The dataset includes 540 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0176559-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zjxne0
title: Occurrence Download

description: A dataset containing 1675 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Abutilon Tourn. ex Mill.",
 "Geometry POLYGON((-85.78125 15.961329,-85.78125 -41.771311,-30.937499 -41.771311,-30.937499 15.961329,-85.78125 15.961329))",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 1675 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090003-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.em8j7y
title: Occurrence Download

description: A dataset containing 2801 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Peromyscus melanocarpus Osgood, 1904"
 ]
}

 The dataset includes 2801 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009216-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ve9f7q
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Benin",
 "TaxonKey is Simulium damnosum Theobald, 1903"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046325-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5jer77
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cediopsylla inaequalis interrupta Jordan, 1925",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009240-231120084113126/datasets/export for details.
DOI: 10.15468/dl.gq796j
title: Occurrence Download

description: A dataset containing 30617 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mnemiopsis leidyi A.Agassiz, 1865"
 ]
}

 The dataset includes 30617 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000220-171109162308116/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5pnz6c
title: Occurrence Download

description: A dataset containing 1528 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dryopteris sparsa (D.Don) Kuntze"
 ]
}

 The dataset includes 1528 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046334-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h5pau7
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-110.02401 22.91541,-110.02598 22.85304,-109.85652 22.85893,-109.85455 22.92012,-110.02401 22.91541))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Lepidochelys olivacea (Eschscholtz, 1829), Lepidochelys kempii Garman, 1880, Dermochelys coriacea (Vandelli, 1761), Chelonia mydas Gray, 1831, Caretta caretta (Linnaeus, 1758), Eretmochelys imbricata (Linnaeus, 1766))"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009211-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5l3bza
title: Occurrence Download

description: A dataset containing 7659 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mola mola (Linnaeus, 1758)"
 ]
}

 The dataset includes 7659 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090009-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b4wjsk
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bolbitis sinensis (Baker) K.Iwats."
 ]
}

 The dataset includes 76 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046337-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t2s5yd
title: Occurrence Download

description: A dataset containing 517 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elsholtzia flava (Benth.) Benth."
 ]
}

 The dataset includes 517 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003069-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bvhjcd
title: Occurrence Download

description: A dataset containing 700 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Briquetia Hochr.",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 700 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090010-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dow0x0
title: Occurrence Download

description: A dataset containing 3249 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Senna hirsuta (L.) H.S.Irwin & Barneby"
 ]
}

 The dataset includes 3249 records from 180 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009232-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4e8ut5
title: Occurrence Download

description: A dataset containing 219 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Oebalus ypsilongriseus, Oebalus ypsilongriseus, Oebalus ypsilongriseus, Oebalus ypsilongriseus (DeGeer 1773), Oebalus ypsilongriseus (De Geer, 1773), Oebalus ypsilongriseus (De Geer 1773), Oebalus ypsilongriseus (De Geer, 1773), Oebalus ypsilongriseus (De Geer, 1773), Oebalus ypsilongriseus (De Geer 1773), Oebalus ypsilongriseus (De Geer, 1773), Oebalus ypsilongriseus (DeGeer 1773) DeGeer 1773, Oebalus spec (Fabricius, 1775), Banasa maculata Campos & Garbelotto, 2010, Banasa maculata Campos & Garbelotto 2010, Cimex ypsilongriseus De Geer, 1773, Cimex ypsilongriseus De Geer, 1773)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 219 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0176558-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eroio6
title: Occurrence Download

description: A dataset containing 6467 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dinophysis acuminata Claparède & Lachmann, 1859"
 ]
}

 The dataset includes 6467 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090011-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25464148
title: Soil Cores A and B Data.xlsx

description: Soil Samples A and B data
DOI: 10.15468/dl.2au3uv
title: Occurrence Download

description: A dataset containing 10570 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Peromyscus melanotis J.A.Allen & Chapman, 1897"
 ]
}

 The dataset includes 10570 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009217-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ud7zbu
title: Occurrence Download

description: A dataset containing 84484 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fumaria officinalis L.",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 84484 records from 351 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009232-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ui2jey
title: Occurrence Download

description: A dataset containing 6467 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dinophysis acuminata Claparède & Lachmann, 1859"
 ]
}

 The dataset includes 6467 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090012-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bqq4rx
title: Occurrence Download

description: A dataset containing 404 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Andira nitida Mart. ex Benth."
 ]
}

 The dataset includes 404 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009234-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pj434m
title: Occurrence Download

description: A dataset containing 1005636 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leporidae"
 ]
}

 The dataset includes 1005636 records from 1399 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237103-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bp2s96
title: Occurrence Download

description: A dataset containing 447 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Neacomys tenuipes Thomas, 1900"
 ]
}

 The dataset includes 447 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003602-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ta4ecq
title: Occurrence Download

description: A dataset containing 281 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Picea orientalis (L.) Peterm.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 281 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041868-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kx4ed2
title: Occurrence Download

description: A dataset containing 541 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "GadmGid is DEU.11_1",
 "Geometry POLYGON((-4.06008 42.26677,16.97347 42.26677,16.97347 50.67659,-4.06008 50.67659,-4.06008 42.26677))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Muscardinus avellanarius (Linnaeus, 1758)",
 "Year 2012-2024"
 ]
}

 The dataset includes 541 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001601-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u0nbkn
title: Occurrence Download

description: A dataset containing 10211 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is USBombus, contemporary survey data of North American bumble bees (Hymenoptera, Apidae, Bombus) distributed in the United States"
 ]
}

 The dataset includes 10211 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030649-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ihmgup
title: Occurrence Download

description: A dataset containing 222370 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Acer campestre L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 222370 records from 600 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041869-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14589477
title: General prokaryote and eukaryote Kraken2 database

description: Database description

Kraken2 database containing all NCBI RefSeq “Complete genome” entries (database accessed on the 11th of February 2021) with accession prefixes NC, NW, AC, NG, NT, NS, and NZ of the following taxonomic groups: archaea, bacteria, fungi, human, protozoa, and viruses. This database also contained a selection of metazoan model species reference genomes, listed below.






Species



Accession





Aedes aegypti 



GCF_002204515





Aedes albopictus 



GCF_006496715





Anas platyrhynchos 



GCF_015476345





Stomoxys calcitrans 



GCF_001015335





Apis mellifera 



GCF_003254395





Bos taurus 



GCF_002263795





Capra hircus 



GCF_001704415





Cavia porcellus 



GCF_000151735





Chlorocebus sabaeus 



GCF_015252025





Columba livia 



GCF_000337935





Culex quinquefasciatus 



GCF_015732765





Equus caballus 



GCF_002863925





Gallus gallus 



GCF_000002315





Homo sapiens 



GCF_000001405





Ixodes scapularis 



GCF_002892825





Meleagris gallopavo 



GCF_000146605





Mesocricetus auratus 



GCF_000349665





Mus musculus 



GCF_000001635





Numida meleagris 



GCF_002078875





Ovis aries 



GCF_002742125





Rattus norvegicus 



GCF_015227675





Sus scrofa 



GCF_000003025





Database reconstruction

To reconstruct the database, extract the taxonomy.tar.gz archive as follows:

tar -xvzf taxonomy.tar.gz

the hash.k2d file has been compressed, to decompress it, use the following command:

gunzip --remove hash.k2d.gz

taxonomy.tab contains the required taxonomy information to visualize Kraken2 results with Krona.
DOI: 10.5281/zenodo.14589478
title: General prokaryote and eukaryote Kraken2 database

description: Database description

Kraken2 database containing all NCBI RefSeq “Complete genome” entries (database accessed on the 11th of February 2021) with accession prefixes NC, NW, AC, NG, NT, NS, and NZ of the following taxonomic groups: archaea, bacteria, fungi, human, protozoa, and viruses. This database also contained a selection of metazoan model species reference genomes, listed below.






Species



Accession





Aedes aegypti 



GCF_002204515





Aedes albopictus 



GCF_006496715





Anas platyrhynchos 



GCF_015476345





Stomoxys calcitrans 



GCF_001015335





Apis mellifera 



GCF_003254395





Bos taurus 



GCF_002263795





Capra hircus 



GCF_001704415





Cavia porcellus 



GCF_000151735





Chlorocebus sabaeus 



GCF_015252025





Columba livia 



GCF_000337935





Culex quinquefasciatus 



GCF_015732765





Equus caballus 



GCF_002863925





Gallus gallus 



GCF_000002315





Homo sapiens 



GCF_000001405





Ixodes scapularis 



GCF_002892825





Meleagris gallopavo 



GCF_000146605





Mesocricetus auratus 



GCF_000349665





Mus musculus 



GCF_000001635





Numida meleagris 



GCF_002078875





Ovis aries 



GCF_002742125





Rattus norvegicus 



GCF_015227675





Sus scrofa 



GCF_000003025





Database reconstruction

To reconstruct the database, extract the taxonomy.tar.gz archive as follows:

tar -xvzf taxonomy.tar.gz

the hash.k2d file has been compressed, to decompress it, use the following command:

gunzip --remove hash.k2d.gz

taxonomy.tab contains the required taxonomy information to visualize Kraken2 results with Krona.
DOI: 10.5281/zenodo.13340268
title: Nearctic Salpinginae COI phylogenetic analysis and map data

description: This dataset includes three files associated with the "Revision of the Nearctic Salpinginae (Coleoptera: Salpingidae) manuscript by Johnston and Pollock.

 

The first file is a Nexus file for Mesquite which includes the final alignment of COI DNA barcodes and the results of their analysis under maximum likelihood.

The second two files are an R script for the creation of maps from the associated csv file of point data for specimen records of Nearctic salpingines.
DOI: 10.5281/zenodo.13340267
title: Nearctic Salpinginae COI phylogenetic analysis and map data

description: This dataset includes three files associated with the "Revision of the Nearctic Salpinginae (Coleoptera: Salpingidae) manuscript by Johnston and Pollock.

 

The first file is a Nexus file for Mesquite which includes the final alignment of COI DNA barcodes and the results of their analysis under maximum likelihood.

The second two files are an R script for the creation of maps from the associated csv file of point data for specimen records of Nearctic salpingines.
DOI: 10.5281/zenodo.14610344
title: Nearctic Salpinginae COI phylogenetic analysis and map data

description: This dataset includes three files associated with the "Revision of the Nearctic Salpinginae (Coleoptera: Salpingidae) manuscript by Johnston and Pollock.

 

The first file is a Nexus file for Mesquite which includes the final alignment of COI DNA barcodes and the results of their analysis under maximum likelihood.

The second two files are an R script for the creation of maps from the associated csv file of point data for specimen records of Nearctic salpingines.
DOI: 10.5281/zenodo.14378773
title: Dataset for "Rapid multi-well evaluation of assorted materials for hydro-gel-assisted giant unilamellar vesicle production: empowering bottom-up synthetic biology."

description: This dataset includes all the raw micrographs, scatter-plots, cytometry data, graphs, excel sheets, and tomographic data used in the report entitled, "Rapid multi-well evaluation of assorted materials for hydrogel-assisted giant unilamellar vesicle production: empowering bottom-up synthetic biology."

Authors: Cherng-Wen Darren Tan1*, Magdalena Schöller2 and Eva-Kathrin Ehmoser3 1 University of Natural Resources and Life Sciences, Department of Bionanosciences, Institute of Synthetic Bioarchitectures, Muthgasse 11, Level 2, 1190, Vienna, Austria; darren.tan@boku.ac.at -mail.com2 University of Natural Resources and Life Sciences, Department of Bionanosciences, Institute of Synthetic Bioarchitectures, Muthgasse 11, Level 2, 1190, Vienna, Austria; magdalena.schoeller@boku.ac.at3 University of Natural Resources and Life Sciences, Department of Bionanosciences, Institute of Synthetic Bioarchitectures, Muthgasse 11, Level 2, 1190, Vienna, Austria; eva.ehmoser@boku.ac.at *Correspondence: darren.tan@boku.ac.at -mail.com; Tel.: +43 1 47654-80457
DOI: 10.5281/zenodo.14378774
title: Dataset for "Rapid multi-well evaluation of assorted materials for hydro-gel-assisted giant unilamellar vesicle production: empowering bottom-up synthetic biology."

description: This dataset includes all the raw micrographs, scatter-plots, cytometry data, graphs, excel sheets, and tomographic data used in the report entitled, "Rapid multi-well evaluation of assorted materials for hydrogel-assisted giant unilamellar vesicle production: empowering bottom-up synthetic biology."

Authors: Cherng-Wen Darren Tan1*, Magdalena Schöller2 and Eva-Kathrin Ehmoser3 1 University of Natural Resources and Life Sciences, Department of Bionanosciences, Institute of Synthetic Bioarchitectures, Muthgasse 11, Level 2, 1190, Vienna, Austria; darren.tan@boku.ac.at -mail.com2 University of Natural Resources and Life Sciences, Department of Bionanosciences, Institute of Synthetic Bioarchitectures, Muthgasse 11, Level 2, 1190, Vienna, Austria; magdalena.schoeller@boku.ac.at3 University of Natural Resources and Life Sciences, Department of Bionanosciences, Institute of Synthetic Bioarchitectures, Muthgasse 11, Level 2, 1190, Vienna, Austria; eva.ehmoser@boku.ac.at *Correspondence: darren.tan@boku.ac.at -mail.com; Tel.: +43 1 47654-80457