cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.8ujx3m
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hydrocotyle ranunculoides",
 "Country is Iran (Islamic Republic of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090628-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fska5m
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myriophyllum aquaticum",
 "Country is Israel",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090627-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yjggmf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Channa striata",
 "Country is Fiji",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090629-250717081556266/datasets/export for details.
DOI: 10.15468/dl.9v2fxz
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mystus rufescens)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090631-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28355231
title: Cryo-EM captures early intermediate steps in dynein activation by LIS1

description: Cryo-EM and models of the structures of dynein and dynein-LIS1 complexes presented in the manuscript.
DOI: 10.6084/m9.figshare.28355231.v1
title: Cryo-EM captures early intermediate steps in dynein activation by LIS1

description: Cryo-EM and models of the structures of dynein and dynein-LIS1 complexes presented in the manuscript.
DOI: 10.15468/dl.vg4qp9
title: Occurrence Download

description: A dataset containing 1910 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Creurgops dentatus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 1910 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090630-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14979348
title: DeepH-HONPAS dataset

description: DeepH-HONPAS dataset consists of the raw DFT data for the training of bilayer graphene and bilayer MoS2 structures. Also, the DFT results including overlap matrices of twisted structures are provided. This dataset is used with DeepH-HONPAS code.

To prepare the dataset, please unzip the dataset and set the right path by specifying "raw_dir" in the preprocess.ini file. After preprocess, the binary .HSX files will be translated into .h5 files for neural network training. Dataset files include:

=== Dataset (Training data, validation data, test data splitting is random each time running "deeph-preprocess") ===

Bilayer_graphene_PBE.zip: a set of bilayer graphene structures, calculated with PBE functional

Bilayer_graphene_HSE06.zip: a set of bilayer graphene structures, calculated with HSE06 functional

Bmos2_PBE.zip: a set of bilayer MoS2 structures, calculated with PBE functional

Bmos2_HSE06.zip: a set of bilayer MoS2 structures, calculated with HSE06 functional

To inference the large structures, please unzip the files that contain the twisted structure result and set the right path by specifying "OLP_dir" in the inference.ini file. After the inference step, the predicted Hamiltonians should be in the "work_dir". Further comparison of band structures are available with the .bands files. The overlap files include:

=== Overlap matrice (Useful only in "deeph-inference" step) ===

PBE results: TBG-7.34-DZ-PBE.zip, TBG-4.41-DZ-PBE.zip, TBG-2.88-DZ-PBE.zip, TBG-1.05-DZ-PBE.zip, TBmos2-7.34-DZ-PBE.zip, TBmos2-4.41-DZ-PBE.zip, TBmos2-2.88-DZ-PBE.zip

HSE06 results: TBG-7.34-DZ-HSE06.zip, TBG-4.41-DZ-HSE06.zip, TBG-2.88-DZ-HSE06.zip, TBmos2-7.34-DZ-HSE06.zip
DOI: 10.5281/zenodo.14979347
title: DeepH-HONPAS dataset

description: DeepH-HONPAS dataset consists of the raw DFT data for the training of bilayer graphene and bilayer MoS2 structures. Also, the DFT results including overlap matrices of twisted structures are provided. This dataset is used with DeepH-HONPAS code.

To prepare the dataset, please unzip the dataset and set the right path by specifying "raw_dir" in the preprocess.ini file. After preprocess, the binary .HSX files will be translated into .h5 files for neural network training. Dataset files include:

=== Dataset (Training data, validation data, test data splitting is random each time running "deeph-preprocess") ===

Bilayer_graphene_PBE.zip: a set of bilayer graphene structures, calculated with PBE functional

Bilayer_graphene_HSE06.zip: a set of bilayer graphene structures, calculated with HSE06 functional

Bmos2_PBE.zip: a set of bilayer MoS2 structures, calculated with PBE functional

Bmos2_HSE06.zip: a set of bilayer MoS2 structures, calculated with HSE06 functional

To inference the large structures, please unzip the files that contain the twisted structure result and set the right path by specifying "OLP_dir" in the inference.ini file. After the inference step, the predicted Hamiltonians should be in the "work_dir". Further comparison of band structures are available with the .bands files. The overlap files include:

=== Overlap matrice (Useful only in "deeph-inference" step) ===

PBE results: TBG-7.34-DZ-PBE.zip, TBG-4.41-DZ-PBE.zip, TBG-2.88-DZ-PBE.zip, TBG-1.05-DZ-PBE.zip, TBmos2-7.34-DZ-PBE.zip, TBmos2-4.41-DZ-PBE.zip, TBmos2-2.88-DZ-PBE.zip

HSE06 results: TBG-7.34-DZ-HSE06.zip, TBG-4.41-DZ-HSE06.zip, TBG-2.88-DZ-HSE06.zip, TBmos2-7.34-DZ-HSE06.zip
DOI: 10.15468/dl.98gt6j
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hydrocotyle ranunculoides",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 36 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090632-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28748549
title: Data for the manuscript "Reconfigurable non-Abelian integrated photonics"

description: This file contains the data of the manuscript "Reconfigurable non-Abelian integrated photonics", including those in Figs. 2a, 2d, 3e and 3f.
DOI: 10.6084/m9.figshare.28748549.v1
title: Data for the manuscript "Reconfigurable non-Abelian integrated photonics"

description: This file contains the data of the manuscript "Reconfigurable non-Abelian integrated photonics", including those in Figs. 2a, 2d, 3e and 3f.
DOI: 10.15468/dl.hhf8sq
title: Occurrence Download

description: A dataset containing 321 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paspalum scrobiculatum",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 321 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090633-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14887547
title: The information about pretraining and fine-tuning datasets for EPMolGen.

description: The raw pretraining and fine-tuning datasets for EPMolGen.  The repository of EPMolGen: https://github.com/atzhenyuyang/EPMolGen.

If you want the .lmdb files of pretraining and fine-tuning, which is the data after filtering, please visit https://zenodo.org/records/15921759.
DOI: 10.5281/zenodo.14887548
title: The information about pretraining and fine-tuning datasets for EPMolGen.

description: The raw pretraining and fine-tuning datasets for EPMolGen.  The repository of EPMolGen: https://github.com/atzhenyuyang/EPMolGen.

If you want the .lmdb files of pretraining and fine-tuning, which is the data after filtering, please visit https://zenodo.org/records/15921759.
DOI: 10.15468/dl.58vfxx
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paspalum scrobiculatum",
 "Country is Vanuatu",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090634-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h96f5e
title: Occurrence Download

description: A dataset containing 5464 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Azolla filiculoides",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5464 records from 264 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090635-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29432531
title: Coastal Aquifers: Key Contributors to Ocean Chemistry through Solute Fluxes

description: Calculation of enrichment and depletion of major elements (Ca, Mg, K, Na) and Cl concentrations; end-member compositions of published papers with dataset of major elements in coastal aquifers
DOI: 10.6084/m9.figshare.29432531.v1
title: Coastal Aquifers: Key Contributors to Ocean Chemistry through Solute Fluxes

description: Calculation of enrichment and depletion of major elements (Ca, Mg, K, Na) and Cl concentrations; end-member compositions of published papers with dataset of major elements in coastal aquifers
DOI: 10.15468/dl.gte8k5
title: Occurrence Download

description: A dataset containing 667 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Azolla filiculoides",
 "Country is Germany",
 "HasCoordinate is true"
 ]
}

 The dataset includes 667 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090637-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d2g9p7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Channa striata",
 "Country is Mexico",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090636-250717081556266/datasets/export for details.
DOI: 10.6084/m9.figshare.28699742
title: Multiple bursts of speciation in Madagascar’s endangered lemurs

description: This dataset contains the following files:
1. Strepsirrhini_AHEsConcatenated_allLoci_allTaxa.nex: This nexus file contains all AHE sequences for all individuals.
2. Strepsirrhini_MitochondrialSequences_cat.nex: This nexus file contains all available mitochondrial sequences from this study.
3. Strepsirrhini_AllIndividuals_AllLoci_RaxmlNG_geneTrees.trees: This file contains gene trees for every AHE locus, as estimated by raxml.
4. GeneTrees_1indvPerGenus_input4Quibl.trees: This file contains the same gene trees as above, but reduced to a single representative per genus (used in Quibl analysis)
5. MCMCTreeFiles_allAnalyses.zip: This zipped file contains a separate folder for each of the 6 MCMCTree analyses performed. Within each folder are all input and output files from these analyses.
6. Strepsirrhini_PhyloNet_InputFiles.zip: This zipped file contains 35 files (7 files for each of the 5 genera analyzed) that were used in PhyloNet analyses. Files are labeled with genus name and with the number of hybrid nodes estimated. 
7. 6000TactTrees.trees: This file contains 6000 trees representing 1000 stochastically resolved trees (using the program TACT) for each of the six different fossil calibrated trees.
DOI: 10.6084/m9.figshare.28699742.v1
title: Multiple bursts of speciation in Madagascar’s endangered lemurs

description: This dataset contains the following files:
1. Strepsirrhini_AHEsConcatenated_allLoci_allTaxa.nex: This nexus file contains all AHE sequences for all individuals.
2. Strepsirrhini_MitochondrialSequences_cat.nex: This nexus file contains all available mitochondrial sequences from this study.
3. Strepsirrhini_AllIndividuals_AllLoci_RaxmlNG_geneTrees.trees: This file contains gene trees for every AHE locus, as estimated by raxml.
4. GeneTrees_1indvPerGenus_input4Quibl.trees: This file contains the same gene trees as above, but reduced to a single representative per genus (used in Quibl analysis)
5. MCMCTreeFiles_allAnalyses.zip: This zipped file contains a separate folder for each of the 6 MCMCTree analyses performed. Within each folder are all input and output files from these analyses.
6. Strepsirrhini_PhyloNet_InputFiles.zip: This zipped file contains 35 files (7 files for each of the 5 genera analyzed) that were used in PhyloNet analyses. Files are labeled with genus name and with the number of hybrid nodes estimated. 
7. 6000TactTrees.trees: This file contains 6000 trees representing 1000 stochastically resolved trees (using the program TACT) for each of the six different fossil calibrated trees.
DOI: 10.6084/m9.figshare.29083661
title: Mechanical-electric Dual Characteristics based Solid-liquid Interfacing Sensor for High Accurate Liquid Identification

description: source data for all figures
DOI: 10.6084/m9.figshare.29083661.v1
title: Mechanical-electric Dual Characteristics based Solid-liquid Interfacing Sensor for High Accurate Liquid Identification

description: source data for all figures
DOI: 10.6084/m9.figshare.28165595
title: GeoMIP-Pattern – a pattern scaling dataset for efficient generation of custom geoengineering scenarios

description: In this paper we present GeoMIP-pattern, the first global geoengineering pattern scaling dataset. This dataset is useful to generate custom solar radiation modification scenarios and to emulate the GeoMIP model output with low data volume. Temperature, precipitation, and relative humidity patterns are derived from ScenarioMIP SSP5-8.5 and GeoMIP G6sulfur model output data using a two-step approach: the first scaling patterns are obtained by estimating a linear regression between the field of interest and the SSP5-8.5 annual global mean surface temperature, allowing for the calculation of no stratospheric aerosol injection scenarios for a global spatial grid. The second patterns are produced by regressing the field of interest on the annual global temperature difference between the G6sulfur and SSP5-8.5 experiments, which in combination with the first pattern emulates the stratospheric aerosol injection scenario. The dataset contains validation statistics, including unit root hypothesis tests novel to the field of pattern scaling, which demonstrate that the pattern slope adequately captures local changes, with most regions showing no remaining trend or nonstationarities in the residuals.
DOI: 10.6084/m9.figshare.28165595.v1
title: GeoMIP-Pattern – a pattern scaling dataset for efficient generation of custom geoengineering scenarios

description: In this paper we present GeoMIP-pattern, the first global geoengineering pattern scaling dataset. This dataset is useful to generate custom solar radiation modification scenarios and to emulate the GeoMIP model output with low data volume. Temperature, precipitation, and relative humidity patterns are derived from ScenarioMIP SSP5-8.5 and GeoMIP G6sulfur model output data using a two-step approach: the first scaling patterns are obtained by estimating a linear regression between the field of interest and the SSP5-8.5 annual global mean surface temperature, allowing for the calculation of no stratospheric aerosol injection scenarios for a global spatial grid. The second patterns are produced by regressing the field of interest on the annual global temperature difference between the G6sulfur and SSP5-8.5 experiments, which in combination with the first pattern emulates the stratospheric aerosol injection scenario. The dataset contains validation statistics, including unit root hypothesis tests novel to the field of pattern scaling, which demonstrate that the pattern slope adequately captures local changes, with most regions showing no remaining trend or nonstationarities in the residuals.
DOI: 10.15468/dl.vkymx5
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hydrocotyle ranunculoides",
 "Country is Peru",
 "HasCoordinate is true"
 ]
}

 The dataset includes 52 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090638-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hrtuby
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Azolla filiculoides",
 "Country is Ghana",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090639-250717081556266/datasets/export for details.
DOI: 10.15468/dl.72hqgd
title: Occurrence Download

description: A dataset containing 652 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Callichthys callichthys)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 652 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090640-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29057252
title: Structure of CFTR bound to (<i>R</i>)-BPO-27 unveils a pore-blockage mechanism

description: CFTR (E1371Q) bound to the inhibitor (R)-BPO-27.
DOI: 10.6084/m9.figshare.29057252.v1
title: Structure of CFTR bound to (<i>R</i>)-BPO-27 unveils a pore-blockage mechanism

description: CFTR (E1371Q) bound to the inhibitor (R)-BPO-27.
DOI: 10.15468/dl.5xjrz7
title: Occurrence Download

description: A dataset containing 3005 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paspalum urvillei",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3005 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090642-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ec85fm
title: Occurrence Download

description: A dataset containing 51168 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Crax rubra)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 51168 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090612-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7uydjx
title: Occurrence Download

description: A dataset containing 26325 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Crinifer piscator)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 26325 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090641-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.becf8f
title: Occurrence Download

description: A dataset containing 106 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Channa striata",
 "Country is Philippines",
 "HasCoordinate is true"
 ]
}

 The dataset includes 106 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090643-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ecxaw
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-71.60438 -33.53095,-71.60693 -33.53102,-71.60912 -33.5331,-71.60896 -33.53545,-71.60792 -33.53848,-71.60511 -33.54,-71.60397 -33.54005,-71.60023 -33.53805,-71.59882 -33.53415,-71.59545 -33.53522,-71.59207 -33.5363,-71.58609 -33.53678,-71.58135 -33.53665,-71.57854 -33.53574,-71.57417 -33.53457,-71.57136 -33.53457,-71.56736 -33.53418,-71.56465 -33.53192,-71.56434 -33.53327,-71.56398 -33.53543,-71.55986 -33.53596,-71.55534 -33.53704,-71.54863 -33.53747,-71.54696 -33.53622,-71.54613 -33.53301,-71.54545 -33.53262,-71.54413 -33.53387,-71.53941 -33.53343,-71.53941 -33.52818,-71.54271 -33.52858,-71.54478 -33.52769,-71.54629 -33.52634,-71.54937 -33.52648,-71.55099 -33.52941,-71.5509 -33.5323,-71.55288 -33.53324,-71.55445 -33.53219,-71.55968 -33.53155,-71.56004 -33.52854,-71.56134 -33.52629,-71.56328 -33.52584,-71.56629 -33.52757,-71.57358 -33.53098,-71.57948 -33.53316,-71.58326 -33.53384,-71.58506 -33.53376,-71.5879 -33.53384,-71.58997 -33.53361,-71.59326 -33.53346,-71.59425 -33.53339,-71.59722 -33.53211,-71.59863 -33.53074,-71.60036 -33.52999,-71.60237 -33.52987,-71.60438 -33.53095))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Myocastor coypus"
 ]
}

 The dataset includes 28 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090644-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zqbmz4
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Azolla filiculoides",
 "Country is Greece",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090645-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.