cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27643265.v1
title: Additional file 3 of Changes in lipid abundance are associated with disease progression and treatment response in chronic Trypanosoma cruzi infection

description: Additional file 3: Dataset 2: Covariate-adjusted results of the multiple linear regression analysis of the metabolomic and lipidomic study disaggregated by treatment status.
DOI: 10.6084/m9.figshare.27643268
title: Additional file 4 of Changes in lipid abundance are associated with disease progression and treatment response in chronic Trypanosoma cruzi infection

description: Additional file 4: Dataset 3: Covariate-adjusted results of the multiple linear regression analysis of the lipidomic study.
DOI: 10.6084/m9.figshare.27643268.v1
title: Additional file 4 of Changes in lipid abundance are associated with disease progression and treatment response in chronic Trypanosoma cruzi infection

description: Additional file 4: Dataset 3: Covariate-adjusted results of the multiple linear regression analysis of the lipidomic study.
DOI: 10.6084/m9.figshare.27643277
title: Additional file 7 of Changes in lipid abundance are associated with disease progression and treatment response in chronic Trypanosoma cruzi infection

description: Additional file 7: Dataset 4: Data values used to plot figures presented in the manuscript.
DOI: 10.6084/m9.figshare.27643277.v1
title: Additional file 7 of Changes in lipid abundance are associated with disease progression and treatment response in chronic Trypanosoma cruzi infection

description: Additional file 7: Dataset 4: Data values used to plot figures presented in the manuscript.
DOI: 10.6084/m9.figshare.27643286
title: Additional file 1 of Validation of a prognostic blood-based sphingolipid panel for men with localized prostate cancer followed on active surveillance

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.27643286.v1
title: Additional file 1 of Validation of a prognostic blood-based sphingolipid panel for men with localized prostate cancer followed on active surveillance

description: Supplementary Material 1
DOI: 10.15468/dl.4quvnd
title: Occurrence Download

description: A dataset containing 355 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((1.2145411141941267 39.67987606310484,5.214541114194127 39.67987606310484,5.214541114194127 43.67987606310484,1.2145411141941267 43.67987606310484,1.2145411141941267 39.67987606310484))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cistus ladanifer L.",
 "Year 2020-2024"
 ]
}

 The dataset includes 355 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005554-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xfehfj
title: Occurrence Download

description: A dataset containing 6649 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Moringa oleifera Lam."
 ]
}

 The dataset includes 6649 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005555-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.emr9d6
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lasia concinna Alderw."
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005556-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nxvv8w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Blyxa kasaragodensis P.Biju, Josekutty & Augustine"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005557-241107131044228/datasets/export for details.
DOI: 10.15468/dl.j3q2nv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Blyxa kasaragodensis P.Biju, Josekutty & Augustine"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005558-241107131044228/datasets/export for details.
DOI: 10.15468/dl.yu5eyn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Blyxa kasaragodensis P.Biju, Josekutty & Augustine"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005559-241107131044228/datasets/export for details.
DOI: 10.15468/dl.jutdpx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Blyxa mangalensis K.Rashmi & G.Krishnak."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005560-241107131044228/datasets/export for details.
DOI: 10.5281/zenodo.14061903
title: Experimental investigation on dynamics and flow resistance of granular-fluid flows

description: Dataset related to the manuscript “Experimental investigation on dynamics and flow resistance of granular-fluid flows”, submitted to the Journal of Geophysical Research: Earth Surface.
DOI: 10.5281/zenodo.14061904
title: Experimental investigation on dynamics and flow resistance of granular-fluid flows

description: Dataset related to the manuscript “Experimental investigation on dynamics and flow resistance of granular-fluid flows”, submitted to the Journal of Geophysical Research: Earth Surface.
DOI: 10.15468/dl.g5e6jb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Blyxa mangalensis K.Rashmi & G.Krishnak."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005561-241107131044228/datasets/export for details.
DOI: 10.15468/dl.abzsqm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Blyxa mangalensis K.Rashmi & G.Krishnak."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005562-241107131044228/datasets/export for details.
DOI: 10.15468/dl.jpge54
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Blyxa novoguineensis Hartog"
 ]
}

 The dataset includes 13 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005564-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f4zwfc
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((3.16567 42.43616,-0.11162 40.34661,0.80485 39.63543,1.71398 39.63543,1.73598 40.2513,2.2492 40.2513,2.24187 40.69854,5.29188 40.6912,5.27722 41.88628,3.16567 42.43616))",
 "TaxonKey is Mobula mobular (Bonnaterre, 1788)"
 ]
}

 The dataset includes 16 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005563-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4enhwq
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Blyxa quadricostata Hartog"
 ]
}

 The dataset includes 36 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005565-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g9wfe7
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Blyxa vietii C.D.K.Cook & Luond"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005566-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14061938
title: Dastset and code for Fast sequence alignment for centromere with RaMA

description: Dastset and code for Fast sequence alignment for centromere with RaMA
DOI: 10.5281/zenodo.14061939
title: Dastset and code for Fast sequence alignment for centromere with RaMA

description: Dastset and code for Fast sequence alignment for centromere with RaMA
DOI: 10.15468/dl.fuzkf2
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Diphylla ecaudata Spix, 1823",
 "Year 2014-2024"
 ]
}

 The dataset includes 58 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005567-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.62xk4q
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Enchisthenes hartii (Thomas, 1892)",
 "Year 2014-2024"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005568-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b35krj
title: Occurrence Download

description: A dataset containing 6595 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ophiostoma novo-ulmi Brasier",
 "Year 1986-2024"
 ]
}

 The dataset includes 6595 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005569-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14061994
title: Comparative evaluation of species delimitation methods and phylogeny of the genus Agrilus (Coleoptera: Buprestidae) from China

description: Table S1. Primer information. Table S2. PCR reaction conditions for COI. Table S3. PCR reaction conditions for CYTB. Table S4. Information of Agrilus species collected from China. Figure S1. Comparison of results of four methods (ABGD, ASAP, jMOTU, bPTP) based on COI. Figure S2. Comparison of results of four methods (ABGD, ASAP, jMOTU, bPTP) based on CYTB. Figure S3. ML tree based on the concatenated sequences of three genes (COI, CYTB and 28S). The DNA sequences of COI, CYTB and 28S used in this study are also provided.
DOI: 10.5281/zenodo.14061995
title: Comparative evaluation of species delimitation methods and phylogeny of the genus Agrilus (Coleoptera: Buprestidae) from China

description: Table S1. Primer information. Table S2. PCR reaction conditions for COI. Table S3. PCR reaction conditions for CYTB. Table S4. Information of Agrilus species collected from China. Figure S1. Comparison of results of four methods (ABGD, ASAP, jMOTU, bPTP) based on COI. Figure S2. Comparison of results of four methods (ABGD, ASAP, jMOTU, bPTP) based on CYTB. Figure S3. ML tree based on the concatenated sequences of three genes (COI, CYTB and 28S). The DNA sequences of COI, CYTB and 28S used in this study are also provided.
DOI: 10.15468/dl.myp6re
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lasia concinna Alderw."
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005570-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6a8dzy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Blyxa kasaragodensis P.Biju, Josekutty & Augustine"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005571-241107131044228/datasets/export for details.
DOI: 10.25423/cmcc/medsea_multiyear_bgc_006_008_medbfm3
title: Mediterranean Sea Biogeochemical Reanalysis (CMEMS MED-Biogeochemistry, MedBFM3 system)
title: MEDSEA_MULTIYEAR_BGC_006_008

description: The 1999-2019 biogeochemical reanalysis for the Mediterranean Sea at 1/24 degree is produced by means of the MedBFM model system (i.e. the physical-biogeochemical OGSTM-BFM model coupled with the 3DVarBio assimilation scheme). MedBFM reanalysis, which is produced by OGS, is offline coupled with the CMEMS Med-physics reanalysis and features a weekly assimiliation of surface chlorophyll (i.e., CMEMS-OCTAC satellite data).
DOI: 10.5066/p1jj2fmd
title: Predictions of specific conductance and departures from background specific conductance in the Chesapeake Bay watershed, 2001-2016

description: Freshwater salinization is an emerging water quality issue for non-tidal streams and rivers in the Chesapeake Bay watershed (CBW), USA region. A model was developed to predict specific conductance (SC; a proxy for salinity) conditions across the CBW and departures from background SC. Discrete observations of SC from 1999-2016 were acquired from a published SC data inventory and explanatory variables describing sources of SC were compiled from several sources. Random forests modeling was conducted to predict SC at four time periods (1999-2001, 2004-2006, 2009-2011, and 2014-2016) at all non-tidal National Hydrography Dataset Plus Version 2.1 (NHDPlusV2.1; 1:100K scale) stream reaches. These predictions were then compared to a national background SC dataset to determine relative departures from background SC for each NHDPlusV2.1 reach ID. This data release contains model input data, model output data, and predictions of SC.

This data release contains the following three files:

1."Model_input.csv": Contains SC observations, explanatory variables, and additional columns relevant to the model application.

2. "Model_output.csv": Contains predicted SC values for the reaches contained in either the testing or training datasets, as well as the feature contributions for each explanatory variable.

3. "Model_predictions.csv": Contains predicted SC, predicted/expected (or P/E) ratios, and departure categories for all non-tidal reach IDs in the CBW for the four time periods.
DOI: 10.5066/p98o2hqj
title: Compilation of multi-agency specific conductance observations for streams within the Chesapeake Bay watershed

description: Freshwater salinization is an emerging issue for freshwater environments in the Chesapeake Bay, USA region. Salinization is often described by measurements of specific conductance (SC). This data release contains specific conductance observations collected by multiple regional agencies for streams within the Chesapeake Bay Watershed. This inventory compiles and harmonizes data from the Water Quality Portal (WQP), which is a data repository developed by the National Water Quality Monitoring Council and supported by the U.S. Environmental Protection Agency and U.S. Geological Survey, and the U.S. Geological Survey National Water Information System (NWIS). Both discrete measures of SC, which are single measures taken on a particular time and day, and continuous measures of SC, which are repeated measures of SC taken at regular, short intervals, such as 15-minute or hourly intervals, were compiled for this data release. The discrete data were also processed to screen out non-relevant observations and harmonize units. The WQP uses "MonitoringLocationIdentifier" to identify each unique site and monitoring activities, and this term is used throughout the data release to differentiate among unique sites and monitoring activities as well. The data release includes four items: 1. ["Site_inventory_for_specific_conductance_measures.csv"]: This is a site inventory of all locations where SC data had been collected and compiled for the data release. This file includes information on the monitoring location (coordinates, state, and county), the organization responsible for the data collection, the type of data available (discrete, continuous, or both) and its unique monitoring location and activity. 2. ["Discrete_specific_conductance_results.txt"]: This file contains all discrete SC observations. Identifying information (coordinates, monitoring location name and identifier), along with the observation value, units, and multiple flagging columns which denoted whether any changes were made to the observation or units during the processing steps. Full details are included in the "readme_file_for_Ches_Bay_specific_conductance_inventory.pdf" file. 3. ["Continuous_specific_conductance_results.zip"]: This zipped folder contains 89 .csv files for all the continuous USGS SC data available in the Chesapeake Bay watershed. Each file name includes each unique MonitoringLocationIdentifier. 4. ["readme_file_for_Ches_Bay_specific_conductance_inventory.pdf"]: This document describes all the processing and harmonization steps to generate the site inventory and discrete SC dataset, and for downloading the high frequency SC datasets.
DOI: 10.5281/zenodo.10044772
title: Dataset and Code Accompanying the Study by Medina-Vega et al. in Nature Ecology & Evolution: Tropical Tree Ectomycorrhiza Are Distributed Independently of Soil Nutrients

description: This Zenodo repository contains the code and the processed dataset used in the research paper titled "Tropical tree ectomycorrhiza are distributed independently of soil nutrients" published in Nature Ecology & Evolution. In this study, we investigate the distribution and abundance of ectomycorrhizal (EcM) trees in lowland tropical forests and their relationship with soil quality.
Key Finding: EcM-associated trees' distribution and abundance in lowland tropical forests are independent of soil quality.
Contents:

Code (CODE_COARSE_SCALE.R and CODE_FINE_SCALE.R): Contains the R scripts used for data analysis.
Processed Dataset (PCs_prop_EcM.csv): Includes the processed data for the fine-scale analysis.
README: Provides detailed information on how to use the code, interpret the dataset, and access additional required information.
Data Access Information:

To perform the full analyses, please request additional data from the Principal Investigators (PIs) of the plots.
ForestGEO plot data can be obtained upon request through the ForestGEO portal at http://ctfs.si.edu/datarequest/.
Refer to Extended Data Table 1 in the manuscript for a comprehensive list of data sources.
DOI: 10.5281/zenodo.11321594
title: NFkB High Throughput
DOI: 10.5281/zenodo.13203290
title: large size datasets with negative sample sequences

description: This compressed file contains the reference sequences used to generate the datasets with 5000 samples.
DOI: 10.5281/zenodo.13755262
title: Paired X-ray Micro CT Scanning and individual foraminifera isotopic analysis reveal (de)coupled changes in carbonate preservation and temperature

description: To assess the coupling between drivers of isotopic variability and carbonate dissolution in foraminifera, we combine individual foraminiferal carbon and oxygen isotopic analyses (IFA) and X-ray MicroCT Scanning (XMCT)-based measurements of test densities (a proxy for the extent of post-depositional dissolution). As a proof-of-concept application of this approach, we analyze Globigerina bulloides tests from both coretop and downcore (latest Miocene/earliest Pliocene-aged) sediment from Ocean Drilling Project (ODP) Site 1088 (Agulhas Ridge).Sediments from both the core intervals were wet-sieved over a 150 μm sieve and oven-dried at 55°C overnight. Individual tests of G. bulloides were picked from the >150 μm size fraction and gently brushed with the wet tip of a paintbrush to remove any adhering clay. Broken or partially fragmented tests were avoided. 25-50 individuals were mounted on a 1.2cm x 1 cm cardboard sample holder using double-sided carbon and imaged at a time on a Bruker Skyscan 1272 Micro-CT Scanner. In total, 123 individuals from the coretop sample and 88 individuals from the downcore sample were scanned.Stable carbon (δ¹³C) and oxygen (δ¹⁸O) isotopic compositions of individual foraminifera were measured using a Kiel Carbonate Device IV coupled to a Thermo Fisher MAT 253 Plus Isotope Ratio Mass Spectrometer (IRMS). All individuals were weighed on a Sartorius ultramicrobalance before analysis, and only samples with mass >10 µg were analyzed as per the long-term precision setup of analyzing small quantities of carbonates on this machine. The XMCT-IFA dataset in this study consists of δ¹³C and δ¹⁸O values of 90 foraminifera (67 coretop and 23 downcore individuals). We compare population averages of XMCT parameters and isotopic compositions from both the coretop and downcore sediments.
DOI: 10.5281/zenodo.834910
title: Breast Carcinoma Histological Images From The Department Of Pathology, "Agios Pavlos" General Hospital Of Thessaloniki, Greece

description: This dataset contains cases of breast carcinoma histological specimens received at the Department of Pathology, “Agios Pavlos” General Hospital of Thessaloniki, Greece. The dataset consists of 300 annotated images of resolution 1280x960 corresponding to 21 different patients with invasive ductal carcinoma of the breast of grades 1-3 (grouped in the corresponding folders).

More details about the dataset are presented in the paper: 

K. Dimitropoulos, P. Barmpoutis, C. Zioga, A. Kamas, K. Patsiaoura and N. Grammalidis, "Grading of invasive breast carcinoma through Grassmannian VLAD encoding", submitted for publication to PLOS ONE, 2017.
DOI: 10.5282/ubm/data.450
title: Supplementary data for the article "Doping-control of excitons and magnetism in few-layer CrSBr"

description: Magnetism in two-dimensional materials reveals phenomena distinct from bulk magnetic crystals, with sensitivity to charge doping and electric fields in monolayer and bilayer van der Waals magnet CrI3. Within the class of layered magnets, semiconducting CrSBr stands out by featuring
stability under ambient conditions, correlating excitons with magnetic order and thus providing strong magnon-exciton coupling, and exhibiting peculiar magneto-optics of exciton-polaritons. Here, we demonstrate that both exciton and magnetic transitions in bilayer and trilayer CrSBr are sensitive to voltage-controlled field-effect charging, exhibiting bound exciton-charge complexes and doping-induced metamagnetic transitions. Moreover, we demonstrate how these unique properties enable optical probes of local magnetic order, visualizing magnetic domains of competing phases across metamagnetic transitions induced by magnetic field or electrostatic doping. Our work identifies few-layer CrSBr as a rich platform for exploring collaborative effects of charge, optical excitations, and magnetism.