cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7377929
title: Supplementary Material for: Cognitive Function and Impairment in Older, Rural South African Adults: Evidence from “Health and Aging in Africa: A Longitudinal Study of an INDEPTH Community in Rural South Africa”

description: <b><i>Background/Aims:</i></b> We aimed to estimate the prevalence of cognitive impairment, and the sociodemographic and comorbid predictors of cognitive function among older, rural South African adults. <b><i>Methods:</i></b> Data were from a population-based study of 5,059 adults aged ≥40 years in rural South Africa in 2015. Cognitive impairment was defined as scoring ≤1.5 SDs below the mean composite time orientation and memory score, or requiring a proxy interview with “fair” or “poor” proxy-reported memory. Multiple linear regression estimated the sociodemographic and comorbid predictors of cognitive score, with multiplicative statistical interactions between each of age and sex with education. <b><i>Results:</i></b> Cognitive impairment increased with age, from 2% of those aged 40–44 (11/516) to 24% of those aged ≥75 years (214/899). The independent predictors of lower cognitive score were being older, female, unmarried, not working, having low education, low household wealth, and a history of cardiovascular conditions. Education modified the negative associations between female sex, older age, and cognitive function score. <b><i>Conclusions:</i></b> The prevalence of cognitive impairment increased with age and is comparable to rates of dementia reported in other sub-Saharan African countries. Age and sex differences in cognitive function scores were minimized as education increased, potentially reflecting the power of even poor-quality education to improve cognitive reserve.
DOI: 10.6084/m9.figshare.7377929.v1
title: Supplementary Material for: Cognitive Function and Impairment in Older, Rural South African Adults: Evidence from “Health and Aging in Africa: A Longitudinal Study of an INDEPTH Community in Rural South Africa”

description: <b><i>Background/Aims:</i></b> We aimed to estimate the prevalence of cognitive impairment, and the sociodemographic and comorbid predictors of cognitive function among older, rural South African adults. <b><i>Methods:</i></b> Data were from a population-based study of 5,059 adults aged ≥40 years in rural South Africa in 2015. Cognitive impairment was defined as scoring ≤1.5 SDs below the mean composite time orientation and memory score, or requiring a proxy interview with “fair” or “poor” proxy-reported memory. Multiple linear regression estimated the sociodemographic and comorbid predictors of cognitive score, with multiplicative statistical interactions between each of age and sex with education. <b><i>Results:</i></b> Cognitive impairment increased with age, from 2% of those aged 40–44 (11/516) to 24% of those aged ≥75 years (214/899). The independent predictors of lower cognitive score were being older, female, unmarried, not working, having low education, low household wealth, and a history of cardiovascular conditions. Education modified the negative associations between female sex, older age, and cognitive function score. <b><i>Conclusions:</i></b> The prevalence of cognitive impairment increased with age and is comparable to rates of dementia reported in other sub-Saharan African countries. Age and sex differences in cognitive function scores were minimized as education increased, potentially reflecting the power of even poor-quality education to improve cognitive reserve.
DOI: 10.7284/133171
title: Water Temperature data collected during research cruise OC1705B using a Sea-Bird SBE-48 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7377923
title: Vegetation responses to seasonal weather conditions and decreasing grazing pressure in the arid Succulent Karoo of South Africa<sup>§</sup>

description: The Succulent Karoo biome is a renowned centre of biodiversity and endemism in the arid winter rainfall region of South Africa that is threatened by climate change. On 20 permanently marked plots within a biodiversity observatory, species richness and cover were assessed annually from 2002 to 2017 during the growing season. We were interested, firstly, in whether the vegetation showed any trends in response to the strong decrease in grazing pressure, which occurred at the beginning of the monitoring period, and secondly, in the effect of seasonal climate on the vegetation. We analysed the responses of species richness and cover in four life forms to seasonal rainfall and the standardised precipitation–evapotranspiration index (SPEI) using linear mixed-effect models. Time had a positive effect on richness of annual species and a negative effect on cover of shrubs and annuals, which increased in response to SPEI and less strongly to rainfall during autumn and winter. Habitat did not have any effect and geophytes and perennial herbs did not show any significant response. The importance of SPEI during autumn and winter is discussed in relation to potential germination cues and the projected decrease in rainfall and increase in temperature during these seasons.
DOI: 10.6084/m9.figshare.7377923.v1
title: Vegetation responses to seasonal weather conditions and decreasing grazing pressure in the arid Succulent Karoo of South Africa<sup>§</sup>

description: The Succulent Karoo biome is a renowned centre of biodiversity and endemism in the arid winter rainfall region of South Africa that is threatened by climate change. On 20 permanently marked plots within a biodiversity observatory, species richness and cover were assessed annually from 2002 to 2017 during the growing season. We were interested, firstly, in whether the vegetation showed any trends in response to the strong decrease in grazing pressure, which occurred at the beginning of the monitoring period, and secondly, in the effect of seasonal climate on the vegetation. We analysed the responses of species richness and cover in four life forms to seasonal rainfall and the standardised precipitation–evapotranspiration index (SPEI) using linear mixed-effect models. Time had a positive effect on richness of annual species and a negative effect on cover of shrubs and annuals, which increased in response to SPEI and less strongly to rainfall during autumn and winter. Habitat did not have any effect and geophytes and perennial herbs did not show any significant response. The importance of SPEI during autumn and winter is discussed in relation to potential germination cues and the projected decrease in rainfall and increase in temperature during these seasons.
DOI: 10.7284/133177
title: Water Temperature data collected during research cruise OC1705B using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133176
title: Timeserver data collected during research cruise OC1705B using a Microsemi SyncServer S350 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129542
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC1706A using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7377899
title: Identification of a gene cluster for biosynthesis of the sesquiterpene antibiotic, heptelidic acid, in <i>Aspergillus oryzae</i>

description: Heptelidic acid (HA), a sesquiterpene lactone, is a known inhibitor of glyceraldehyde-3-phosphate dehydrogenase (GAPDH). Recently, we found that HA was produced by <i>Aspergillus oryzae</i> RIB40 and acted as the growth inhibitor of the salt-tolerant lactic acid bacteria in soy sauce brewing. Although several decades have passed since the discovery of HA, the genes involved in its biosynthesis and biosynthetic pathway have not yet been fully identified. In this study, we identified the HA biosynthetic gene cluster (HA cluster) using gene disruption and expression analysis. We also revealed that two transcription regulatory genes adjacent to the HA cluster were responsible for the expression of HA biosynthetic genes in <i>A. oryzae</i>. Interestingly, the HA cluster contained a gene encoding GAPDH (<i>gpdB</i>), which showed much higher resistance to HA than the GAPDH gene (<i>gpdA</i>) located at the other locus, but which did not seem to act as a self-resistant gene. HA cluster in A. <i>oryzae</i> consists of 8 genes and two transcription regulatory genes (hepR, S). These genes are essential but only hepR is effective in increasing of HA.
DOI: 10.7284/129545
title: Anemometer data collected during research cruise OC1706A using a Gill WindObserver II instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7377899.v1
title: Identification of a gene cluster for biosynthesis of the sesquiterpene antibiotic, heptelidic acid, in <i>Aspergillus oryzae</i>

description: Heptelidic acid (HA), a sesquiterpene lactone, is a known inhibitor of glyceraldehyde-3-phosphate dehydrogenase (GAPDH). Recently, we found that HA was produced by <i>Aspergillus oryzae</i> RIB40 and acted as the growth inhibitor of the salt-tolerant lactic acid bacteria in soy sauce brewing. Although several decades have passed since the discovery of HA, the genes involved in its biosynthesis and biosynthetic pathway have not yet been fully identified. In this study, we identified the HA biosynthetic gene cluster (HA cluster) using gene disruption and expression analysis. We also revealed that two transcription regulatory genes adjacent to the HA cluster were responsible for the expression of HA biosynthetic genes in <i>A. oryzae</i>. Interestingly, the HA cluster contained a gene encoding GAPDH (<i>gpdB</i>), which showed much higher resistance to HA than the GAPDH gene (<i>gpdA</i>) located at the other locus, but which did not seem to act as a self-resistant gene. HA cluster in A. <i>oryzae</i> consists of 8 genes and two transcription regulatory genes (hepR, S). These genes are essential but only hepR is effective in increasing of HA.
DOI: 10.6084/m9.figshare.7377884
title: Data Sets Nature Comm Paper on Cu2Se 2018

description: The data set contains thermoelectric properties of Cu2Se measured in a special experimental setup. The data of electronic structure obtained by DFT calculation are also available.
DOI: 10.7284/129541
title: Fluorometer data collected during research cruise OC1706A using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7377884.v2
title: Data Sets Nature Comm Paper on Cu2Se 2018

description: The data set contains thermoelectric properties of Cu2Se measured in a special experimental setup. The data of electronic structure obtained by DFT calculation are also available.
DOI: 10.6084/m9.figshare.7377884.v1
title: Figure_3_Together.xlsx

description: The data set contains thermoelectric properties of Cu2Se measured in a special experimental setup. The data of electronic structure obtained by DFT calculation are also available.
DOI: 10.7284/129546
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1706A using a Furuno GP-90 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129551
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1706A using a Ashtech ADU5 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129539
title: Gyrocompass data collected during research cruise OC1706A using a Sperry MK-37 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129540
title: PTU (Pressure, Temperature, Humidity) data collected during research cruise OC1706A using a Vaisala PTU300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7377740
title: Additional file 6: of Methylome profiling of healthy and central precocious puberty girls

description: Differentially methylated CpG sites between CPP and pubertal control groups, with methylation differences &gt; 10% and FDR
DOI: 10.7284/129543
title: Radiometer data collected during research cruise OC1706A using a RMR Co. PRP instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7377740.v1
title: Additional file 6: of Methylome profiling of healthy and central precocious puberty girls

description: Differentially methylated CpG sites between CPP and pubertal control groups, with methylation differences &gt; 10% and FDR
DOI: 10.6084/m9.figshare.7377731
title: Additional file 4: of Methylome profiling of healthy and central precocious puberty girls

description: Differentially methylated CpG sites between CPP and pre-pubertal control groups, with methylation differences &gt; 10% and FDR
DOI: 10.7284/129544
title: Water Temperature data collected during research cruise OC1706A using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7377731.v1
title: Additional file 4: of Methylome profiling of healthy and central precocious puberty girls

description: Differentially methylated CpG sites between CPP and pre-pubertal control groups, with methylation differences &gt; 10% and FDR
DOI: 10.7284/129549
title: Water Temperature data collected during research cruise OC1706A using a Sea-Bird SBE-48 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7377713
title: Additional file 3: of Multi-drug resistant Enterobacter bugandensis species isolated from the International Space Station and comparative genomic analyses with human pathogenic strains

description: Table S3. Detailed function(s) of all the AMR genes associated with 5 ISS strains. (XLSX 14Â kb)
DOI: 10.7284/129548
title: Timeserver data collected during research cruise OC1706A using a Microsemi SyncServer S350 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7377704
title: Additional file 1: of Methylome profiling of healthy and central precocious puberty girls

description: Gene ontology of the genes related to the top DMRs between pre- and post-pubertal healthy girls. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7377707
title: Additional file 2: of Multi-drug resistant Enterobacter bugandensis species isolated from the International Space Station and comparative genomic analyses with human pathogenic strains

description: Table S2. Plasmid gene content of ISS strains. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.7377713.v1
title: Additional file 3: of Multi-drug resistant Enterobacter bugandensis species isolated from the International Space Station and comparative genomic analyses with human pathogenic strains

description: Table S3. Detailed function(s) of all the AMR genes associated with 5 ISS strains. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.7377707.v1
title: Additional file 2: of Multi-drug resistant Enterobacter bugandensis species isolated from the International Space Station and comparative genomic analyses with human pathogenic strains

description: Table S2. Plasmid gene content of ISS strains. (XLSX 17Â kb)
DOI: 10.7284/129555
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC1706B using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7377698
title: Additional file 2: of Evolution of mitochondrial TAT translocases illustrates the loss of bacterial protein transport machines in mitochondria

description: Table S1. eTatB-positive species and the presence of mitochondria-encoded TatA and TatC. Table S2. Eukaryotic nuclear genomes used for the initial search of Tat components. Table S3. Primers used in the study. Table S4. Plasmids used in the study. Table S5. Bacterial strains used in the study. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.7377704.v1
title: Additional file 1: of Methylome profiling of healthy and central precocious puberty girls

description: Gene ontology of the genes related to the top DMRs between pre- and post-pubertal healthy girls. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7377698.v1
title: Additional file 2: of Evolution of mitochondrial TAT translocases illustrates the loss of bacterial protein transport machines in mitochondria

description: Table S1. eTatB-positive species and the presence of mitochondria-encoded TatA and TatC. Table S2. Eukaryotic nuclear genomes used for the initial search of Tat components. Table S3. Primers used in the study. Table S4. Plasmids used in the study. Table S5. Bacterial strains used in the study. (XLSX 21 kb)
DOI: 10.7284/129558
title: Anemometer data collected during research cruise OC1706B using a Gill WindObserver II instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7377692
title: Additional file 1: of Multi-drug resistant Enterobacter bugandensis species isolated from the International Space Station and comparative genomic analyses with human pathogenic strains

description: Table S1. Genomic characteristics, single nucleotide polymorphism, single nucleotide variations, and insertion/deletions of E. bugandensis strains isolated from ISS. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.7377692.v1
title: Additional file 1: of Multi-drug resistant Enterobacter bugandensis species isolated from the International Space Station and comparative genomic analyses with human pathogenic strains

description: Table S1. Genomic characteristics, single nucleotide polymorphism, single nucleotide variations, and insertion/deletions of E. bugandensis strains isolated from ISS. (XLSX 11Â kb)
DOI: 10.7284/129554
title: Fluorometer data collected during research cruise OC1706B using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129559
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1706B using a Furuno GP-90 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129564
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1706B using a Ashtech ADU5 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129552
title: Gyrocompass data collected during research cruise OC1706B using a Sperry MK-37 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7377635
title: Additional file 2: of Identification and characterization of early photoreceptor cis-regulatory elements and their relation to Onecut1

description: Table S2. Table of primers used in this study. The purpose, primer name, and primer sequence in 5' to 3' orientation are listed. (XLSX 41 kb)
DOI: 10.7284/129553
title: PTU (Pressure, Temperature, Humidity) data collected during research cruise OC1706B using a Vaisala PTU300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7377635.v1
title: Additional file 2: of Identification and characterization of early photoreceptor cis-regulatory elements and their relation to Onecut1

description: Table S2. Table of primers used in this study. The purpose, primer name, and primer sequence in 5' to 3' orientation are listed. (XLSX 41 kb)
DOI: 10.7284/129556
title: Radiometer data collected during research cruise OC1706B using a RMR Co. PRP instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129560
title: Singlebeam Echosounder data collected during research cruise OC1706B using a Knudsen 3260 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7377614
title: Additional file 1: of Identification and characterization of early photoreceptor cis-regulatory elements and their relation to Onecut1

description: Table S1. Table of cis-regulatory elements used in this study. The predominant expression by photoreceptor type of the associated gene is shown in the first column. The associated gene name is shown in the second column. The element name is shown in the third column and the genomic coordinates are shown in the 4th column. (XLSX 32 kb)
DOI: 10.7284/129557
title: Water Temperature data collected during research cruise OC1706B using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7377614.v1
title: Additional file 1: of Identification and characterization of early photoreceptor cis-regulatory elements and their relation to Onecut1

description: Table S1. Table of cis-regulatory elements used in this study. The predominant expression by photoreceptor type of the associated gene is shown in the first column. The associated gene name is shown in the second column. The element name is shown in the third column and the genomic coordinates are shown in the 4th column. (XLSX 32 kb)
DOI: 10.7284/129562
title: Water Temperature data collected during research cruise OC1706B using a Sea-Bird SBE-48 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129561
title: Timeserver data collected during research cruise OC1706B using a Microsemi SyncServer S350 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129571
title: Anemometer data collected during research cruise OC1707A using a Gill WindObserver II instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129567
title: Fluorometer data collected during research cruise OC1707A using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129572
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1707A using a Furuno GP-90 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7377560
title: Additional file 4: of Gut microbiome composition is associated with spatial structuring and social interactions in semi-feral Welsh Mountain ponies

description: Sample sheet. (CSV 4 kb)
DOI: 10.7284/129577
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1707A using a Ashtech ADU5 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7377560.v1
title: Additional file 4: of Gut microbiome composition is associated with spatial structuring and social interactions in semi-feral Welsh Mountain ponies

description: Sample sheet. (CSV 4 kb)