cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7667945.v1
title: Resource Recovery from Waste: Towards a Circular Economy – Life Cycle Analysis Impact Assessment Data – upgrading Heavy Oil and Pyrolysis Bio-Oil with 2% and 6% Bio-Pd+PM neo-catalyst , respectively, using 50% aqua regia leachate, with reuse

description: Environmental Impact Assessment for the upgrading of Heavy Oil and Pyrolysis Bio-Oils (from Wood and Algae) with 2% and 6% Bio-Pd+PM neo-catalyst , respectively, using 50% <i>aqua regia</i> leachate, with reuse.<b></b><br> Impact categories assessed: Abiotic depletion (fossil fuels) - ADFF (MJ); Global warming Potential - GWP100a (kg CO<sub>2eq.</sub>); Ozone layer depletion - ODP (kg CFC-11<sub>eq.</sub>); Human toxicity - HT (kg 1,4-DB<sub>eq.</sub>); Acidification Potential - AP (kg SO<sub>2eq.</sub>); and Eutrophication Potential - EP (kg PO<sub>4eq.</sub>).<br> In addition to substance impact contribution analyses, for identifying key substance drivers for impact contribution, across all impact categories.
DOI: 10.6084/m9.figshare.7667912
title: Performing process-oriented investigations involving mass transfer using Rcrust: a new phase equilibrium modelling tool

description: Files for reproducing Figures 3–7. To open these, download Rcrust from https://www.sun.ac.za/english/faculty/science/earthsciences/rcrust and replace the 'Projects' and 'data' folders with those in the zipped folder. Open each project by double clicking the appropriate x.RData file.
DOI: 10.7284/119412
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise CB1036 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7667912.v1
title: Performing process-oriented investigations involving mass transfer using Rcrust: a new phase equilibrium modelling tool

description: Files for reproducing Figures 3–7. To open these, download Rcrust from https://www.sun.ac.za/english/faculty/science/earthsciences/rcrust and replace the 'Projects' and 'data' folders with those in the zipped folder. Open each project by double clicking the appropriate x.RData file.
DOI: 10.6084/m9.figshare.7667864
title: Phylogenetic and morphological analyses of the mycoparasitic genus <i>Piptocephalis</i>

description: The Piptocephalidaceae (Zoopagales, Zoopagomycota) contains three genera of mycoparasitic, haustoria-forming fungi: <i>Kuzuhaea, Piptocephalis</i>, and <i>Syncephalis</i>. Although the species in this family are diverse and ubiquitous in soil and dung, they are among the least studied fungi. Co-cultures of <i>Piptocephalis</i> and their hosts are relatively easy to isolate from soil and dung samples across the globe, making them a good model taxon for the order Zoopagales. This study focuses on the systematics of the genus <i>Piptocephalis</i>. Despite the fact that there are approximately 40 described <i>Piptocephalis</i> species, there are no modern taxonomic or molecular phylogenetic treatments of this group. Minimal sequence data are available, and relatively little is known about the true diversity or biogeography of the genus. Our study addresses two aspects: <i>Piptocephalis</i> systematics and analyses of the length and inter- and infraspecific variation of the nuc rDNA internal transcribed spacer (ITS1-5.8S-ITS2 = ITS) region. First, we generated a large subunit (28S) nuc rDNA phylogeny and evaluated several morphological characters by testing their correlation with the phylogeny using Bayesian Tip-association Significance testing (BaTS). We found monophyly of <i>Piptocephalis</i> species identified based on morphological traits, but morphological character states were not conserved across clades, suggesting that there have been multiple gains and losses of morphological characters. We also found that <i>Kuzhuaea</i> is nested within <i>Piptocephalis</i>. Second, we amplified the ITS from many <i>Piptocephalis</i> isolates, created a sequence alignment, and measured the lengths using the software ITSx. <i>Piptocephalis</i> species had ITS regions that were longer than the average for most Dikarya but were similar in length to those of the related genus <i>Syncephalis</i>.
DOI: 10.6084/m9.figshare.7667864.v1
title: Phylogenetic and morphological analyses of the mycoparasitic genus <i>Piptocephalis</i>

description: The Piptocephalidaceae (Zoopagales, Zoopagomycota) contains three genera of mycoparasitic, haustoria-forming fungi: <i>Kuzuhaea, Piptocephalis</i>, and <i>Syncephalis</i>. Although the species in this family are diverse and ubiquitous in soil and dung, they are among the least studied fungi. Co-cultures of <i>Piptocephalis</i> and their hosts are relatively easy to isolate from soil and dung samples across the globe, making them a good model taxon for the order Zoopagales. This study focuses on the systematics of the genus <i>Piptocephalis</i>. Despite the fact that there are approximately 40 described <i>Piptocephalis</i> species, there are no modern taxonomic or molecular phylogenetic treatments of this group. Minimal sequence data are available, and relatively little is known about the true diversity or biogeography of the genus. Our study addresses two aspects: <i>Piptocephalis</i> systematics and analyses of the length and inter- and infraspecific variation of the nuc rDNA internal transcribed spacer (ITS1-5.8S-ITS2 = ITS) region. First, we generated a large subunit (28S) nuc rDNA phylogeny and evaluated several morphological characters by testing their correlation with the phylogeny using Bayesian Tip-association Significance testing (BaTS). We found monophyly of <i>Piptocephalis</i> species identified based on morphological traits, but morphological character states were not conserved across clades, suggesting that there have been multiple gains and losses of morphological characters. We also found that <i>Kuzhuaea</i> is nested within <i>Piptocephalis</i>. Second, we amplified the ITS from many <i>Piptocephalis</i> isolates, created a sequence alignment, and measured the lengths using the software ITSx. <i>Piptocephalis</i> species had ITS regions that were longer than the average for most Dikarya but were similar in length to those of the related genus <i>Syncephalis</i>.
DOI: 10.7284/119420
title: GNSS (Global Navigation Satellite System) data collected during research cruise CB1036 using a Furuno GP-320B instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7667831
title: Supplementary Material for: Intrascleral Fixation of an Intraocular Lens through the Pars Plana Prevents Corneal Endothelial Damage

description: We report two cases of aphakia in whom an intraocular lens (IOL) was intrasclerally fixated through the pars plana to minimize further corneal endothelial damage. A modified lock-and-lead technique was used. A sclerotomy and scleral incision were made 2.5 mm from the limbus. A 24-G catheter needle was used for penetration of the leading haptic, and two ultrathin 30-G needles were used to bury the ends of the haptics. The scleral incision was sutured with 8-0 nylon. Corneal endothelial cells were preserved after surgery. Neither intra- nor postoperative complications were observed. Intrascleral fixation of an IOL through the pars plana effectively minimizes further damage to corneal endothelial cells in select cases.
DOI: 10.6084/m9.figshare.7667831.v1
title: Supplementary Material for: Intrascleral Fixation of an Intraocular Lens through the Pars Plana Prevents Corneal Endothelial Damage

description: We report two cases of aphakia in whom an intraocular lens (IOL) was intrasclerally fixated through the pars plana to minimize further corneal endothelial damage. A modified lock-and-lead technique was used. A sclerotomy and scleral incision were made 2.5 mm from the limbus. A 24-G catheter needle was used for penetration of the leading haptic, and two ultrathin 30-G needles were used to bury the ends of the haptics. The scleral incision was sutured with 8-0 nylon. Corneal endothelial cells were preserved after surgery. Neither intra- nor postoperative complications were observed. Intrascleral fixation of an IOL through the pars plana effectively minimizes further damage to corneal endothelial cells in select cases.
DOI: 10.7284/119415
title: Hygrometer data collected during research cruise CB1036 using a RM Young 41382 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119417
title: Radiometer data collected during research cruise CB1036 using a Biospherical QSP-2150 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7667648
title: Resource Recovery from Waste: Towards a Circular Economy – Life Cycle Analysis Impact Assessment Data – Commercial catalyst production

description: Environmental Impact Assessment for the production of 10g of Pelleted Ni-Mo/Al<sub>2</sub>O<sub>3</sub> catalyst compared to production of 2g of Dispersed Ni-Mo/Al<sub>2</sub>O<sub>3</sub> catalyst.<br> Impact categories assessed: Abiotic depletion (fossil fuels) - ADFF (MJ); Global warming Potential - GWP100a (kg CO<sub>2eq.</sub>); Ozone layer depletion - ODP (kg CFC-11<sub>eq.</sub>); Human toxicity - HT (kg 1,4-DB<sub>eq.</sub>); Acidification Potential - AP (kg SO<sub>2eq.</sub>); and Eutrophication Potential - EP (kg PO<sub>4eq.</sub>).<br> In addition to substance impact contribution analyses, for identifying key substance drivers for impact contribution, for all impact categories.
DOI: 10.6084/m9.figshare.7667684
title: Resource Recovery from Waste: Towards a Circular Economy – Life Cycle Analysis Impact Assessment Data – Heavy oil and pyrolysis oils (from wood and algae) production

description: Environmental Impact Assessment for the production of 100kg of Heavy oil, 100kg of pyrolysis oil from wood, and 100kg of pyrolysis oil from algae.<br> Impact categories assessed: Abiotic depletion (fossil fuels) - ADFF (MJ); Global warming Potential - GWP100a (kg CO<sub>2eq.</sub>); Ozone layer depletion - ODP (kg CFC-11<sub>eq.</sub>); Human toxicity - HT (kg 1,4-DB<sub>eq.</sub>); Acidification Potential - AP (kg SO<sub>2eq.</sub>); and Eutrophication Potential - EP (kg PO<sub>4eq.</sub>).<br> In addition to an ADFF substance impact contribution analysis, for identifying key substance drivers for impact contribution.
DOI: 10.7284/119418
title: Singlebeam Echosounder data collected during research cruise CB1036 using a Knudsen 320M instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7667648.v1
title: Resource Recovery from Waste: Towards a Circular Economy – Life Cycle Analysis Impact Assessment Data – Commercial catalyst production

description: Environmental Impact Assessment for the production of 10g of Pelleted Ni-Mo/Al<sub>2</sub>O<sub>3</sub> catalyst compared to production of 2g of Dispersed Ni-Mo/Al<sub>2</sub>O<sub>3</sub> catalyst.<br> Impact categories assessed: Abiotic depletion (fossil fuels) - ADFF (MJ); Global warming Potential - GWP100a (kg CO<sub>2eq.</sub>); Ozone layer depletion - ODP (kg CFC-11<sub>eq.</sub>); Human toxicity - HT (kg 1,4-DB<sub>eq.</sub>); Acidification Potential - AP (kg SO<sub>2eq.</sub>); and Eutrophication Potential - EP (kg PO<sub>4eq.</sub>).<br> In addition to substance impact contribution analyses, for identifying key substance drivers for impact contribution, for all impact categories.
DOI: 10.6084/m9.figshare.7667684.v1
title: Resource Recovery from Waste: Towards a Circular Economy – Life Cycle Analysis Impact Assessment Data – Heavy oil and pyrolysis oils (from wood and algae) production

description: Environmental Impact Assessment for the production of 100kg of Heavy oil, 100kg of pyrolysis oil from wood, and 100kg of pyrolysis oil from algae.<br> Impact categories assessed: Abiotic depletion (fossil fuels) - ADFF (MJ); Global warming Potential - GWP100a (kg CO<sub>2eq.</sub>); Ozone layer depletion - ODP (kg CFC-11<sub>eq.</sub>); Human toxicity - HT (kg 1,4-DB<sub>eq.</sub>); Acidification Potential - AP (kg SO<sub>2eq.</sub>); and Eutrophication Potential - EP (kg PO<sub>4eq.</sub>).<br> In addition to an ADFF substance impact contribution analysis, for identifying key substance drivers for impact contribution.
DOI: 10.17637/rh.7667642
title: Data for "The Influence of Microporous Cements on the Pore Network Geometry of Natural Sedimentary Rocks"

description: This folder contains files for pore network modeling of micro CT images for<br>the article "The Influence of Microporous Cements on the Pore Network Geometry<br>of Natural Sedimentary Rocks" by Thomson, Hazel, and Hier-Majumder.<br><br>To create the figures in the article run the python script PNMstats.py<br><br>Description of data:<br><br>The data in Pore_based_only folder uses PNM created only by 'pore-based' mode<br>of PerGeos. For the samples containing microporous cement, the file names 'macro<br>+micro' indicate that the pore space considers the cement phase to be void and<br>treats the porosity prior to cementation. Files marked 'macro_only' considers<br>the microporous cement to be 100% solid. Some other data, with an attempt to assign porosity to the micropores also exist, but they are not used in the article.<br><br>The output of the PNM is saved as two separate files for pores and throats. Open the .csv files to see the headers. There are also data files for Fontainebleau and two Berea sandstones.<br><br><br>
DOI: 10.6084/m9.figshare.7667627
title: Data from: On fibre dispersion modelling of soft biological tissues: a review

description: Collagen fibres within fibrous soft biological tissues such as artery walls, cartilage, myocardiums, corneas and heart valves are responsible for their anisotropic mechanical behaviour. It has recently been recognized that the dispersed orientation of these fibres has a significant effect on the mechanical response of the tissues. <br>Modelling of the dispersed structure is important for the prediction of the stress and deformation characteristics in (patho)physiological tissues under various loading conditions. This paper provides a timely and critical review of the continuum modelling of fibre dispersion, specifically the angular integration and the generalized structure tensor models. The models are used in representative numerical examples to fit sets of experimental data that have been obtained from mechanical tests and fibre structural information from second-harmonic imaging. In particular, patches of healthy and diseased aortic tissues are investigated, and it is shown that the predictions of the models fit very well with the data. It is straightforward to use the models described herein within a finite element framework, which will enable more realistic (and clinically relevant) boundary-value problems to be solved. This also provides a basis for further developments of material models and points to the need for additional mechanical and microstructural data that can inform further advances in the material modelling. <br>See the attached readme file for a description of the data. <br>
DOI: 10.17637/rh.7667642.v1
title: Data for "The Influence of Microporous Cements on the Pore Network Geometry of Natural Sedimentary Rocks"

description: This folder contains files for pore network modeling of micro CT images for<br>the article "The Influence of Microporous Cements on the Pore Network Geometry<br>of Natural Sedimentary Rocks" by Thomson, Hazel, and Hier-Majumder.<br><br>To create the figures in the article run the python script PNMstats.py<br><br>Description of data:<br><br>The data in Pore_based_only folder uses PNM created only by 'pore-based' mode<br>of PerGeos. For the samples containing microporous cement, the file names 'macro<br>+micro' indicate that the pore space considers the cement phase to be void and<br>treats the porosity prior to cementation. Files marked 'macro_only' considers<br>the microporous cement to be 100% solid. Some other data, with an attempt to assign porosity to the micropores also exist, but they are not used in the article.<br><br>The output of the PNM is saved as two separate files for pores and throats. Open the .csv files to see the headers. There are also data files for Fontainebleau and two Berea sandstones.<br><br><br>
DOI: 10.6084/m9.figshare.7667573
title: Resource Recovery from Waste: Towards a Circular Economy – Life Cycle Analysis Impact Assessment Data - Heavy Oil and Pyrolysis Oil upgrading with Ni-Mo/Al2O3 commercial catalyst

description: Environmental Impact Assessment for the upgrading of Heavy Oil and Pyrolysis Bio-Oils (from Wood and Algae) with dispersed Ni-Mo/Al<sub>2</sub>O<sub>3</sub> commercial catalyst (ground up pelleted catalyst).<br> Impact categories assessed: Abiotic depletion (fossil fuels) - ADFF (MJ); Global warming Potential - GWP100a (kg CO<sub>2eq.</sub>); Ozone layer depletion - ODP (kg CFC-11<sub>eq.</sub>); Human toxicity - HT (kg 1,4-DB<sub>eq.</sub>); Acidification Potential - AP (kg SO<sub>2eq.</sub>); and Eutrophication Potential - EP (kg PO<sub>4eq.</sub>).<br> In addition to substance impact contribution analyses, for identifying key substance drivers for impact contribution, across all impact categories.
DOI: 10.7284/119419
title: TSG (Thermosalinograph) data collected during research cruise CB1036 using a Sea-Bird SBE-21 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7667507
title: Resource Recovery from Waste: Towards a Circular Economy - Life Cycle Analysis Impact Assessment Data - Bio-Pd+PM neo-catalyst production

description: Environmental Impact Assessment for the production of 1 kg of Bio-Pd+PM neo-catalyst with both 50% and 25% diluted <i>aqua regia</i> leachate. <br>Impact categories assessed: Abiotic depletion (fossil fuels) - ADFF (MJ); Global warming Potential - GWP100a (kg CO<sub>2eq.</sub>); Ozone layer depletion - ODP (kg CFC-11<sub>eq.</sub>); Human toxicity - HT (kg 1,4-DB<sub>eq.</sub>); Acidification Potential - AP (kg SO<sub>2eq.</sub>); and Eutrophication Potential - EP (kg PO<sub>4eq.</sub>)<br>In addition to an ADFF substance impact contribution analysis, for identifying key substance drivers for impact contribution.
DOI: 10.6084/m9.figshare.7667573.v1
title: Resource Recovery from Waste: Towards a Circular Economy – Life Cycle Analysis Impact Assessment Data - Heavy Oil and Pyrolysis Oil upgrading with Ni-Mo/Al2O3 commercial catalyst

description: Environmental Impact Assessment for the upgrading of Heavy Oil and Pyrolysis Bio-Oils (from Wood and Algae) with dispersed Ni-Mo/Al<sub>2</sub>O<sub>3</sub> commercial catalyst (ground up pelleted catalyst).<br> Impact categories assessed: Abiotic depletion (fossil fuels) - ADFF (MJ); Global warming Potential - GWP100a (kg CO<sub>2eq.</sub>); Ozone layer depletion - ODP (kg CFC-11<sub>eq.</sub>); Human toxicity - HT (kg 1,4-DB<sub>eq.</sub>); Acidification Potential - AP (kg SO<sub>2eq.</sub>); and Eutrophication Potential - EP (kg PO<sub>4eq.</sub>).<br> In addition to substance impact contribution analyses, for identifying key substance drivers for impact contribution, across all impact categories.
DOI: 10.7284/119429
title: GNSS (Global Navigation Satellite System) data collected during research cruise CB1037 using a Furuno GP-320B instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7667501
title: Blood Levels of Tumor Necrosis Factor Alpha and Its Type 2 Receptor Are Elevated in Patients with Boston Type I Keratoprosthesis

description: <b>Purpose</b>: Boston keratoprosthesis (KPro) patients are prone to glaucoma even with well-controlled intraocular pressure (IOP). Recent experimental data have shown that soluble tumor necrosis factor alpha (TNF-<i>α</i>) after ocular injury may contribute to progressive retinal damage and subsequent glaucoma. This study evaluates the blood plasma levels of soluble TNF-<i>α</i>, TNF receptors 1 (TNFR1) and 2 (TNFR2), and leptin in patients with Boston type I KPro. <b>Methods</b>: Venous blood samples were collected from KPro patients with glaucoma (KPro G, <i>n</i> = 19), KPro patients without glaucoma (KPro NoG, <i>n</i> = 12), primary angle closure glaucoma without KPro (PACG, <i>n</i> = 13), and narrow angles without glaucoma or KPro (NA, <i>n</i> = 21). TNF-<i>α</i>, TNFR1, TNFR2, and leptin levels were quantified using the enzyme-linked immunosorbent assay. Erythrocyte sedimentation rate (ESR) was assessed using the Westergren test. Patients with underlying autoimmune conditions or diabetes were excluded from the study. <b>Results</b>: All groups had similar age, body mass index (BMI), IOP, and ESR (<i>p</i> ≥ 0.11). The mean time from KPro surgery to blood draw was 5.3 ± 3.7 years. Compared to NA patients (0.72 ± 0.3 pg/ml), KPro G and KPro NoG patients had higher blood plasma levels of TNF-<i>α</i> (1.18 ± 0.58 pg/ml, <i>p</i> = 0.006; 1.16 ± 0.50 pg/ml, <i>p</i> = 0.04, respectively). Similarly, KPro G patients had higher blood plasma levels of TNFR2 (2768 ± 1368 pg/ml) than NA patients (2020 ± 435 pg/ml, <i>p</i> = 0.048). In multivariate analysis, KPro status remained positively associated with TNF-<i>α</i> levels (<i>β</i> = 0.36; 95% confidence intervals [CI]: 0.14–0.58; <i>p</i> = 0.002) and TNFR2 levels (<i>β</i> = 458.3; 95% CI: 32.8–883.7; <i>p</i> = 0.035) after adjusting for age, gender, BMI, glaucoma status, and ESR. TNFR1 and leptin levels were not significantly different in the study groups. <b>Conclusions</b>: We detected elevated serum levels of TNF-<i>α</i> and TNFR2 in KPro patients. Longitudinal studies are needed to establish TNF-<i>α</i> and TNFR2 as serum biomarkers related to KPro surgery. <b>Abbreviations</b>: BCVA: best corrected visual acuity; BMI: body mass index; CDR: cup-to-disc ratio; EDTA: ethylenediaminetetraacetic acid; ELISA: enzyme-linked immunosorbent assay; ESR: erythrocyte sedimentation rate; HVF: Humphrey visual field; IOP: intraocular pressure; KPro G: keratoprosthesis with glaucoma; KPro NoG: keratoprosthesis without glaucoma; KPro: keratoprosthesis; MD: mean deviation; NA: narrow angle; non-KPro: without keratoprosthesis; PACG: primary angle closure glaucoma; RNFL: retinal nerve fiber layer; TNF-α: tumor necrosis factor alpha; TNFR1: tumor necrosis factor receptor 1; TNFR2: tumor necrosis factor receptor 2