cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.1b15j/3
title: population_means_final

description: Population mean values for all male and female traits used in the analysis. Male data and standard female scarring data taken with permission from Hotzy & Arnqvist (2009), and population fitness data taken with permission from Rankin & Arnqvist (2008). See main text for details.
DOI: 10.5061/dryad.25256/1
title: Data for analyzing occurrence of harbour porpoise foraging offshore of Maryland, USA

description: These data were collected using C-PODs at four sites offshore of Maryland, USA from November 2014 to May 2016. File contains a column for the date (dd/mm/yyyy), Julian Day, Day, Month, Year, the Hour (in EST), Buzz type (0 is non-foraging, 1 is foraging), the Site (1-4), and three columns used solely to create the Buzz type column (autovar, forR, and Sum_R).
DOI: 10.5061/dryad.25256/2
title: Hourly acoustic detections of harbour porpoises offshore of Maryland, USA

description: These data were collected using C-PODs at four sites offshore of Maryland, USA from November 2014 to May 2016. Columns include the Day, Month, Year, Hour (EST), DPM_Porp (the number of minutes in each hour with a porpoise detection), DPH_Porp (presence (1) or absence (0) of a detection in each hour), autovar (for R use only), and the site (1-4).
DOI: 10.5061/dryad.25256/3
title: Comparison of predicted porpoise densities and acoustic metrics

description: Predicted porpoise densities are courtesy of Jason J. Roberts. Acoustic data were collected from November 2014 to May 2016 offshore of Maryland, USA. Columns of importance are the site (1-4), month, Density, and the four acoustic metric columns (maximum number of hours per day with a detection, total number of hours with a detection, maximum number of hours in a day with a detection, and the proportion of days with a detection).
DOI: 10.5061/dryad.25256/4
title: Weekly harbour porpoise detections and environmental data

description: Acoustic data were collected using C-PODs at four sites offshore of Maryland, USA from November 2014 to May 2016. This data file includes the proportion of hours in each week during which porpoises were detected and corresponding median weekly sea surface temperature (SST, in celsius), the natural log of median chlorophyll a concentrations, and fraction of the moon illuminated (weekly median and mean). Week number is the ISO week date standard (ISO-8601).
DOI: 10.5061/dryad.26tq2/2
title: frugivores_visitation_patterns

description: Seed dispersers visitation patterns observed across focal trees located in a human-modified landscape in the Osa Peninsula, Costa Rica (2011-2012)
DOI: 10.5061/dryad.2959s/1
title: Monoculture and biculture fitting: data, scripts, and output

description: "Monoculture parameter estimates.xls" = file showing the parameter estimates from fits of the logistic growth model to each monoculture. "Biculture data parameter estimates.xls" = file showing the parameter estimates from fits of the Lotka-Volterra competition model to every biculture replicate, as well as estimates of relative yield and phylogenetic distance. Both files contain a sheet with relevant meta-data. Two folders, "Fitting bicultures" and "Fitting monocultures”, contain the data, R scripts and in the case of the bicultures, a package used for fitting the data to models. Parameter estimates were obtained by running the scripts in "Fitting bicultures.txt" or "Fitting monocultures.txt" in R. Starting parameter estimates for the optimization algorithms were estimated and entered for each monoculture or biculture separately.
DOI: 10.5061/dryad.32rb2/1
title: Data for BEHECO-2017-0173

description: Data for BEHECO-2017-0173
DOI: 10.5061/dryad.377mc/1
title: Dryad_JAV-01238 - raw SDM outputs

description: Raw species distribution maps derived from nine different algorithms calculated based on occurrence infromations obtained from PTT and GLS tracking. The files are in ASCII format and can be read into any GIS application.
DOI: 10.5061/dryad.4790c/1
title: Zip archive with data and script files

description: Data and script files from the selection experiment.
DOI: 10.5061/dryad.4g622/1
title: SI2 Table S1 SEICAT Application to Amphibians

description: Socio-economic impact classification of amphibians according to SEICAT
DOI: 10.5061/dryad.4g80s/1
title: Social stimulus preferences of 4 rhesus macaques and task performance whilst being rewarded with fluid or social images

description: Data for each monkey for preference testing when pairs of images were presented on a screen (number of ms spent looking at an image). Performance data for all monkeys in tasks where the monkey could be rewarded with fluid only (control task) or could choose between fluid and a preferred image.
DOI: 10.5061/dryad.55nh5/1
title: Ord_TJ-ECE-2017-04-00414R1_weeks5-28

description: See read me file
DOI: 10.5061/dryad.55nh5/2
title: Ord_TJ-ECE-2017-04-00414R1_week64

description: See read me file
DOI: 10.5061/dryad.64fg4/2
title: AlignmentS1

description: The aligned sequences matrix of ITS1.
DOI: 10.5061/dryad.64fg4/4
title: AlignmentS3

description: Concatenated aligned sequences matrix of ITS1+2.
DOI: 10.5061/dryad.64fg4/5
title: Figure S1

description: Phylogenetic consensus tree obtained for Cassia, Senna, and Chamaecrista species based on nrITS datasets constructed using maximum likelihood algorithm.
DOI: 10.5061/dryad.b2k93/1
title: Data_JEB_MaleAgeTrajectory

description: This file contains data collected from a wild population of house sparrows, and used to investigate the male age trajectories of extra-pair and within-pair paternity success.
DOI: 10.5061/dryad.bf1b1/1
title: S01 Data

description: Simultaneous EEG-fMRI and MRI data for Subject 01.
DOI: 10.5061/dryad.bf1b1/2
title: S02 Data

description: Simultaneous EEG-fMRI and MRI data for Subject 02.
DOI: 10.5061/dryad.bf1b1/21
title: EEG Channel Locations

description: BrainProducts 64 channel EEG electrode locations.
DOI: 10.5061/dryad.bf1b1/3
title: S03 Data

description: Simultaneous EEG-fMRI and MRI data for Subject 03.
DOI: 10.5061/dryad.bt713/1
title: Input file for QTL cartographer

description: This excel document is composed of 3 sheets, linkage map information, phenotype information and a summary page, all of which are required for QTL cartographer.
DOI: 10.5061/dryad.c6d53/1
title: Marie-Orleach.et.al_Evolution.2017_dataset

description: Full dataset of the three experiments reported
DOI: 10.5061/dryad.c7h3c/1
title: anonymous individual-level data for 37,967 women from the general population in Taizhou region
DOI: 10.5061/dryad.f0k4j/1
title: Urushadze et al (2017) PLOS NTD

description: Data files used in Urushadze et al (2017) PLOS NTD "Prevalence, Diversity, and Host Associations of Bartonella Strains in Bats from Georgia (Caucasus)." Includes Excel tables containing data on collected bat specimens, bacterial isolates, sequences, and statistical analyses, Excel tables containing data on phylogenetic model selection, phylogenetic trees in Nexus format, parameter log files from Bayesian phylogenetic analyses, and supplementary documents (Appendix and supplementary text).
DOI: 10.5061/dryad.g4437/1
title: greenup

description: Greenup dates in 21 native-dominated and 21 exotic-dominated grassland sites in the tallgrass prairie region of USA
DOI: 10.5061/dryad.g4437/2
title: senesce

description: Senescence date for 21 native-dominated and 21 exotic-dominated sites.
DOI: 10.5061/dryad.g4437/3
title: Greenup_NSVI

description: NDVI (Normalized Difference Vegetation Index) during the early part of the year for 21 native-dominated and 21 exotic-dominated sites.
DOI: 10.5061/dryad.g4437/4
title: Senesce_NDVI

description: NDVI for later dates in the year for 21 native- and 21 exotic-dominated sites.
DOI: 10.5061/dryad.g6s5j/10
title: Howeth_JAE2017_Source_Region_Lake_Data

description: Abiotic conditions of lakes representing the core, midrange, and peripheral source regions of the introduced North American geographic range of Daphnia lumholtzi. Lake name, geographic coordinates, sample date, specific conductivity (mS), total nitrogen (TN, mg per L), total phosphorus (TP, mg per L), and water temperature (depth-integrated average of the epilimnion, in degrees Celsius) are reported.
DOI: 10.5061/dryad.g6s5j/8
title: Howeth_JAE2017_Temperature

description: Mesocosm water temperature (degrees Celsius) recorded every four hours by each of the two data loggers in the experiment.
DOI: 10.5061/dryad.g6s5j/9
title: Howeth_JAE2017_Chlorophyll_Conversion

description: In vivo fluorescence and extracted chlorophyll a data used to generate a regression equation representing the statistical relationship between the two variables. The regression equation was subsequently used to convert in vivo fluorescence to extracted chlorophyll a values in the experiment. Data were sourced from 11 ponds located in the Oakmulgee District, Talladega National Forest, Alabama. Pond name, geographic coordinates, sample date, replicate in vivo fluorescence values (total fluorescence), and extracted chlorophyll a (µg per L) values are reported.
DOI: 10.5061/dryad.h3j3c/1
title: Ventura_Smith_Lubin_All data for BehavEcol

description: All data for Ventura et al. : Crowding leads to fitness benefits and reduced dispersal in a colonial spider
DOI: 10.5061/dryad.h5346/1
title: Smith et al. RSPB-2016-2394 DRYAD

description: Excel file containing metadata and all raw data in the paper.
DOI: 10.5061/dryad.h97jb/1
title: Genotyping Results

description: The results of genetyping all fish included in studies Genetic diversity of the critically endangered lake minnow
DOI: 10.5061/dryad.hm7k5/1
title: MeanAnnualBS

description: Data used to calculate mean annual breeding success for each species (Figure S1)
DOI: 10.5061/dryad.hm7k5/4
title: BreedingSucAge

description: Data for the population-level analysis, used to model age-related variation in breeding success for each sex and species (Figure 2; Table S1; Table S2)
DOI: 10.5061/dryad.hm7k5/5
title: BreedingSucAgeBothSexes

description: Data for the population-level analysis where the age of both parents was known, used to compare the explanatory power of male and female age for each species (Table S3)
DOI: 10.5061/dryad.hm7k5/6
title: EarlyAdulthood

description: Data for the analysis of factors underpinning breeding success in early adulthood for each sex and species (controlling for selective appearance) (Table 2a; Table S4)
DOI: 10.5061/dryad.hm7k5/7
title: LateAdulthood

description: Data for the analysis of factors underpinning breeding success in late adulthood for each sex and species (controlling for selective disappearance) (Table 2b; Table S5; Table S6; Table S7)
DOI: 10.5061/dryad.hm7k5/8
title: GENERAL STATEMENT PLEASE READ THIS BEFORE USING THE DATA
DOI: 10.5061/dryad.hm7k5/9
title: DATA DESCRIPTION
DOI: 10.5061/dryad.kn0h9
title: Data from: Umbilical cord androgens and estrogens in relation to verbal and nonverbal abilities at age 10 in the general population
DOI: 10.5061/dryad.kn0h9/1
title: Sex steroid values, composites and cognitive follow-up Raine Cohort Data

description: Sex steroid values, Androgen and Estrogen composites and cognitive follow-up Raine Cohort data including verbal and visuospatial data collected at age 10. Relevant obsetric, antenatal and demographic data is also included.
DOI: 10.5061/dryad.m6909/1
title: Raman spectroscopy investigation of chromium oxide coating

description: The raw data was generated with a thermo-scientific DXR Raman microscope using the Omnic software that was supplied with equipment.
DOI: 10.5061/dryad.m6909/2
title: FTIR investigation of chromium oxide coating

description: The raw data were generated with Nicolet is50 FTIR equipment using the omnic software that was supplied with the machine.
DOI: 10.5061/dryad.m6909/3
title: XPS Survey scan of chromium oxide coating

description: Scienta ESCA 300 spectrophotometer equipped with a monochromatic Al Kα (1486.6 ev) x-ray source were utilised for the measurements.
DOI: 10.5061/dryad.m6909/4
title: XPS Cr2P doublet for chromium oxide coating

description: Scienta ESCA 300 spectrophotometer equipped with a monochromatic Al Kα (1486.6 ev) x-ray source were utilised for the measurements. The obtained XPS data was analysed with CasaXPS software, Shirkley method was used for the background subtraction and the binding energy calibration was implemented by using the C1s peak taking it as 285eV. A  mixture of Gaussian and Lorentzian model was used in the fitting of the spectrum
DOI: 10.5061/dryad.m6909/5
title: XPS O1S peak for chromium oxide coating

description: Scienta ESCA 300 spectrophotometer equipped with a monochromatic Al Kα (1486.6 ev) x-ray source were utilised for the measurements. The obtained XPS data was analysed with CasaXPS software, Shirkley method was used for the background subtraction and the binding energy calibration was implemented by using the C1s peak taking it as 285eV.
DOI: 10.5061/dryad.m6909/6
title: Structural characterization of chromium oxide coating using XRD

description: The raw data were generated with Siemens D5000 X-ray Diffractometer using Diffrac plus XRD commander software supplied with the machine
DOI: 10.5061/dryad.m76ks/2
title: Data from: Long-term post-fire recovery of daily torpor and activity patterns of a small mammal

description: Statistical models and raw data for our manuscript: Post-fire recovery of torpor and activity patterns of a small mammal. Our study species was the brown antechinus (Antechinus stuartii). Data include ambient temperatures, body temperatures, torpor bouts durations and activity durations.
DOI: 10.5061/dryad.mb552/1
title: Array of Costa Rican bat capture data

description: Capture data collected from the field and arranged in an R data array. Array includes: (1) the capture array (X), with the site, year, visit and species information; (2) matrix of the number of visits conducted at each site by year combination (nrep); (3) the pairwise distance between sites (D); (4) scaled and centered proportion of area covered by trees across all spatial scales; see full model explanation (Env); (5) relative elevation of site compared to surroundings (terrain); (6) whether or not the site was a coffee field (coffee.dummy)
DOI: 10.5061/dryad.mb552/2
title: Full occupancy model with traits

description: R and JAGS code for the full phylogenetic occupancy model with influence of traits included
DOI: 10.5061/dryad.mb552/3
title: Full occupancy model without traits

description: R and JAGS code for the full occupancy model not including traits as an explanatory variable
DOI: 10.5061/dryad.nv6t3/1
title: MS-DATA

description: The data set includes insect performance, plant growth and plant physiology.
DOI: 10.5061/dryad.p9s04/1
title: Data used in the analysis of Lifespan.

description: Data file with one row per individual song sparrow used in the analysis of Lifespan, with the following columns.
Age: Relative lifespan, i.e. lifespan (in years) divided by mean lifespan of all individuals in this dataset.
Sex: Sex of the individual, i.e. Male or Female.
F: Pedigree-based inbreeding coefficient.
MLH: Mean heterozygosity across 160 microsatellite markers.
hi_*: 160 columns with heterozygosity data at each of 160 microsatellite markers, with 0=homozygous, 1=heterozygous, NA=unknown.
DOI: 10.5061/dryad.pg1p2/1
title: Data D'Alba et al. JAV 2017

description: Data on feather microstructure and properties of eiderdown used in D'Alba et al. 2017
DOI: 10.5061/dryad.ps009/6
title: Video S2
DOI: 10.5061/dryad.ps009/7
title: Video S3
DOI: 10.5061/dryad.q03c3/1
title: DATA BEHECO-2016-0591
DOI: 10.5061/dryad.q084s/1
title: Supporting information

description: Table S1. List of R functions developed to automatize and parallelize software.
Table S2. Lamarc the migration parameter estimates.
Figure S1. Density plots for the symmetric species tree of the distribution of extra lineages.
Figure S2. Power of the method applied to the symmetric species tree and theta = 0.01 scenario.
Figure S3. Power of the method applied to the symmetric species tree  and theta = 0.001 scenario.
Figure S4. Comparisons of average time consumption by out method and Lamarc based on symmetric tree scenario.
DOI: 10.5061/dryad.qt584/1
title: Pdamicornis_reference_transcriptome

description: This file is a reference transcriptome for the coral Pocillopora damicornis. The reference contains 78,519 transcripts that represent the longest subcomponent of each subcomponent isogroup from the Trinity assembly. The raw reads used for the Trinity assembly are described in the following publication: Vidal-Dupiol J, Zoccola D, Tambutté E, et al. (2013) Genes related to ion-transport and energy production are upregulated in response to CO 2-driven pH decrease in corals: new insights from transcriptome analysis. PloS ONE, 8, e58652.
DOI: 10.5061/dryad.t6292/2
title: Appendix

description: Appendix to the species and the GenBank numbers.
DOI: 10.5061/dryad.tq46t/1
title: single locus simulations
DOI: 10.5061/dryad.vn757/1
title: becken_out
DOI: 10.5061/dryad.01n20/1
title: toric data
DOI: 10.5061/dryad.0r76j.1
title: Data from: 19th-century collapse of a benthic marine ecosystem on the open continental shelf
DOI: 10.5061/dryad.0r76j.2/2.2
title: Table-ages

description: Summary of radiocarbon-calibrated shell ages of Laqueus erythraeus estimated by amino-acid racemization (with 95% confidence intervals on the mean age), with water depth (m), sampling year, and D/L of Aspartic and Glutamic acids.
DOI: 10.5061/dryad.0r76j.2/3.2
title: Tomasovych and Kidwell supplement R code

description: Source code for evaluating the postmortem age-fequency distribution of the brachiopod Laqueus erythraeus from the Southern California Bight written in R language. Postmortem age estimates based on the Bayesian fitting of Allen et al. (2013) are assigned to a vector directly in this code. The code recreates the figures where the estimates of shell loss from the mixed layer are based on the fitting of the age-frequency distribution to two-phase exponential models, and these estimates are used to reconstruct the trajectory of production.
DOI: 10.5061/dryad.126dg.1
title: Data from: Marine life in a greenhouse world: cephalopod biodiversity and biogeography during the early Late Cretaceous
DOI: 10.5061/dryad.126dg.2/2.2
title: Yacobucci_PBIO_Suppl_Table2

description: This file contains tables of p-values from all Mann-Whitney U-tests run for this analysis, including comparisons of global and regional latitudinal distributions and geographic range sizes.
DOI: 10.5061/dryad.126dg.2/3.2
title: Yacobucci_PBIO_Appendix

description: This Appendix describes the two datasets used in this paper, the Paleobiology Database dataset (PBDB) and Richard MacKenzie Database (MKDB), and provides citations for the original data sources for the Richard MacKenzie Database (MKDB).
DOI: 10.5061/dryad.1t1f5/1
title: 7_Supp_Script_from_rawseq_to_trees

description: This zip file contains an example workflow for processing raw RADseq data to the output and summary of phylogenetic trees. See the README.txt within the zip file for more details.
DOI: 10.5061/dryad.1v244/1
title: Aquatic metazoans

description: Abundance of aquatic metazoans collected in Vriesea procera bromeliads with and without nests of the ant Odontomachus hastatus at Parque Estadual da Serra do Mar (Picinguaba), Estação Ecológica Juréia-Itatins (Juréia) and Parque Estadual da Ilha do Cardoso (Cardoso), São Paulo State, Brazil. Metazoans were identified to the lowest possible taxonomic level, to their classes, orders or families, and were separated into functional groups
DOI: 10.5061/dryad.1v244/2
title: Terrestrial metazoans

description: Abundance of terrestrial metazoans collected in Vriesea procera bromeliads with and without nests of the ant Odontomachus hastatus at Parque Estadual da Serra do Mar (Picinguaba), Estação Ecológica Juréia-Itatins (Juréia) and Parque Estadual da Ilha do Cardoso (Cardoso), São Paulo State, Brazil. Metazoans were identified to the lowest possible taxonomic level and were separated in guilds
DOI: 10.5061/dryad.3j7f6/1
title: Species table used in the calculation of co-occurrence networks

description: This is a site by species occurence table used for all analyses within the manuscript. The data contains information regarding species detections (presence/absence) by sites (with each row identifying each of the 5 distinct survey events for each site [data was aggregated by site for richness and compositional analyses]). Data on the level of agricultulral transformation (%_surrouding_naiveness) and the region (Western and Tablelands) are provided both as continuous and factor values.
DOI: 10.5061/dryad.4c058/1
title: Morphological measurements of N. abietis cocoons

description: Fate and volume (in cubic millimeters) of Neodiprion abietis cocoons collected from 2000 to 2002 in six forest stands in western Newfoundland, Canada.
DOI: 10.5061/dryad.51mq6/1
title: Growth curves data

description: Density estimates of Euglena gracilis cultures grown in the presence of light (cell culture flasks 1-5) and in the absence of it (cell culture flasks A-E).
DOI: 10.5061/dryad.51mq6/2
title: Density profiles, small autocorrelation treatment

description: This is a Mathematica list. Each element of this list contains the set of 11 temporal measurements of a single experimental replicate. Each element of this list contains algal density profiles measured in the presence of the LED sequence in the data file LEDs_small_cL.m. Each data pair contains the x coordinate of the algal density measurement (first element of the pair, expressed in cm) and the number of individuals in that measurement (second element).
DOI: 10.5061/dryad.51mq6/3
title: Density profiles, large autocorrelation treatment

description: This is a Mathematica list. Each element of this list contains the set of 11 temporal measurements of a single experimental replicate. Each element of this list contains algal density profiles measured in the presence of the LED sequence in the data file LEDs_large_cL.m. Each data pair contains the x coordinate of the algal density measurement (first element of the pair, expressed in cm) and the number of individuals in that measurement (second element).
DOI: 10.5061/dryad.51mq6/4
title: LEDs on/off sequences, small autocorrelation treatment

description: This is a Mathematica list. Each element of this list contains the LED on/off sequence for each experimental replicate within the small autocorrelation length treatment. Indicated are the position of the LED in cm from the origin (first element of each data pair) and the LED on/off value (0 or 1, respectively).
DOI: 10.5061/dryad.51mq6/5
title: LEDs on/off sequences, large autocorrelation treatment

description: This is a Mathematica list. Each element of this list contains the LED on/off sequence for each experimental replicate within the large autocorrelation length treatment. Indicated are the position of the LED in cm from the origin (first element of each data pair) and the LED on/off value (0 or 1, respectively).
DOI: 10.5061/dryad.51mq6/6
title: Profile measurements times, small autocorrelation treatment

description: This is a Mathematica list. Each element of the list contains the times (in days) at which the algal density profiles were measured.
DOI: 10.5061/dryad.51mq6/7
title: Mean front position and standard error, small autocorrelation length treatment

description: This is a Mathematica list. It contains five elements, each of which corresponds to the mean front positions measured at a different threshold density, respectively: 45, 60, 75, 90 and 105 1/cm. The mean is computed across the replicates belonging to the small autocorrelation length treatment. Each element of the list contains a list of triplets: the first element of each pair is the mean time of measurement (in days), the second element is the mean front position (in cm), the third element is the standard error of the mean (in cm).