cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15586285
title: Genome Analyses Reveal Diverse Riverine Genetic Contributions to the Lake Malawi Cichlid Radiation

description: This dataset contains several supporting files used in the study "Genome Analyses Reveal Diverse Riverine Genetic Contributions to the Lake Malawi Cichlid Radiation" (Gresham et al. 2025). We collected whole-genome sequencing data for 315 African pseudocrenilabrine cichlid species in order to detect signatures of gene flow between lineages. We provide the following files generated/used in these analyses:



Dtrios_malawi_nonmalawi_BBAA.txt - output of Dsuite Dtrios calculating D statistics and f4-ratios for all possible trios of 315 African pseudocrenilabrine cichlid species. Data used was whole-genome resequencing data aligned to the Astatotilapia callitpera reference genome.

NJ_tree.nwk - Newick Neighbour-Joining phylogenomic tree - distance matrix calculated using plink and divided by the accessible genome size. the tree was then rooted to a reconstructed ancestral sequence. 

ML_tree.tre - Newick Maximum likelihood phylogenomic tree - trees calculated in 100KB non overlapping windows with the GTR+G+I model in IQ-TREE. a consensus tree was then built using ASTRAL-III, and rooted to a reconstructed ancestral sequence. 

Supplementary_Table_1.xlsx - Metadata provided for all samples used. 


The variant call format (VCF) files produced in this study are available under EVA accession number XXXX. The VCF files contain biallelic SNP data for 612 African Pseudocrenilabrine cichlid samples (from Malawi and non-Malawi species) and also include a reconstructed ancestral state sequence of the common ancestor between the Cyphotilapiini and Pseudocrenilabrini tribes as an additional sample (see Blumer et al. 2025 for ancestral state sequence reconstruction methods). Supplementary_Table_1.xlsx provides information on all samples within the VCF files. Genetic material and sequences are subject to an Access and Benefits Sharing (ABS) agreement with the Government of Malawi. Any person who wishes to use this data for any form of commercial purpose must first enter into a commercial licensing and benefit-sharing arrangement with the Government of Malawi.
DOI: 10.15468/dl.gxv7kb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Nanger petersii (Günther, 1884)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024991-250525065834625/datasets/export for details.
DOI: 10.15468/dl.rx9afj
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence)",
 "Country is Lithuania",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lynx lynx (Linnaeus, 1758)",
 "Year 2005-2025"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024992-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5xp9j7
title: Occurrence Download

description: A dataset containing 486519 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-93.93260 -1.85129,-87.26000 -1.85129,-87.26000 0.81661,-93.93260 0.81661,-93.93260 -1.85129))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 486519 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024945-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r6yna8
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Enteromius neefi (Greenwood, 1962)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.5808 -24.13,35.5909 -24.0715,30.5701 -24.0715,30.5701 -28.5786,32.4847 -28.5786,32.55 -28.5222,33.0346 -26.8668,32.9741 -26.7838,33.0415 -26.059,32.9304 -26.0011,32.7994 -26.1281,32.6834 -26.0015,32.813 -25.8728,32.8513 -25.7166,33.3048 -25.3731,35.1489 -24.6699,35.5808 -24.13))"
 ]
}

 The dataset includes 56 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024993-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29256092
title: Figure Supplemental 1_06JUN2025.docx

description: Characteristics of sleep and wakefulness modulated by knockdown of Sodh1 or Attacins in LHLK neurons.
DOI: 10.6084/m9.figshare.29256092.v1
title: Figure Supplemental 1_06JUN2025.docx

description: Characteristics of sleep and wakefulness modulated by knockdown of Sodh1 or Attacins in LHLK neurons.
DOI: 10.15468/dl.t357pa
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (India, China, Nepal, Bhutan, Myanmar, Bangladesh, Pakistan, Afghanistan)",
 "TaxonKey is Thoressa hyrie (de Nicéville, 1891)"
 ]
}

 The dataset includes 22 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024995-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15608994
title: Exploring the Dimensions of Shame in Middle Childhood: A Qualitative Inquiry into Children's Real-Life Experiences
DOI: 10.5281/zenodo.15608995
title: Exploring the Dimensions of Shame in Middle Childhood: A Qualitative Inquiry into Children's Real-Life Experiences
DOI: 10.15468/dl.e7k5tx
title: Occurrence Download

description: A dataset containing 3361 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Nanger granti (Brooke, 1872)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 3361 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024994-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25592/uhhfdm.10525
title: Griot Songs (NCAC_RDD_TAPE_0118A)

description: Jaliyaa
 Songs


<em><sup>Alternative names: Lalo, Kebba, Dramme, Drammeh, Drame, Sidibeh, </sup></em> <em><sup>Bakary, Bakari, Bakery</sup></em>
description: Published by NCAC-National Digital Archive of The Gambia, initiated by University of Hamburg, Asia-Africa-Institute, Germany, funded by Gerda Henkel Foundation, Germany
DOI: 10.25592/uhhfdm.10524
title: Griot Songs (NCAC_RDD_TAPE_0118A)

description: Jaliyaa
 Songs


<em><sup>Alternative names: Lalo, Kebba, Dramme, Drammeh, Drame, Sidibeh, </sup></em> <em><sup>Bakary, Bakari, Bakery</sup></em>
description: Published by NCAC-National Digital Archive of The Gambia, initiated by University of Hamburg, Asia-Africa-Institute, Germany, funded by Gerda Henkel Foundation, Germany
DOI: 10.5281/zenodo.14221668
title: A dataset on the use of online video by students at the in-video level

description: A dataset containing learning analytics data for the playback of learning materials in video format in different college courses in the STEM field, across a period of ten years. It can be used to test hypothesis and tools regarding the use of video in different learning environments, and should be of interest to the learning analytics and educational data mining communities. It can also be of help to teachers and other stakeholders in the educational process to take decisions based on learners actions when playing videos. It consists of data for 35 different videos, with a total of 40,453 sessions, and 313,724 records. The videos are accompanied by their timestamped transcription, both in the original language and their translation into English
DOI: 10.5281/zenodo.14742248
title: A dataset on the use of online video by students at the in-video level

description: A dataset containing learning analytics data for the playback of learning materials in video format in different college courses in the STEM field, across a period of ten years. It can be used to test hypothesis and tools regarding the use of video in different learning environments, and should be of interest to the learning analytics and educational data mining communities. It can also be of help to teachers and other stakeholders in the educational process to take decisions based on learners actions when playing videos. It consists of data for 35 different videos, with a total of 40,453 sessions, and 313,724 records. The videos are accompanied by their timestamped transcription, both in the original language and their translation into English
DOI: 10.5281/zenodo.14959082
title: A dataset on the use of online video by students at the in-video level

description: A dataset containing learning analytics data for the playback of learning materials in video format in different college courses in the STEM field, across a period of ten years. It can be used to test hypothesis and tools regarding the use of video in different learning environments, and should be of interest to the learning analytics and educational data mining communities. It can also be of help to teachers and other stakeholders in the educational process to take decisions based on learners actions when playing videos. It consists of data for 35 different videos, with a total of 40,453 sessions, and 313,724 records. The videos are accompanied by their timestamped transcription, both in the original language and their translation into English
DOI: 10.5281/zenodo.15608954
title: A dataset on the use of online video by students at the in-video level

description: A dataset containing learning analytics data for the playback of learning materials in video format in different college courses in the STEM field, across a period of ten years. It can be used to test hypothesis and tools regarding the use of video in different learning environments, and should be of interest to the learning analytics and educational data mining communities. It can also be of help to teachers and other stakeholders in the educational process to take decisions based on learners actions when playing videos. It consists of data for 35 different videos, with a total of 40,453 sessions, and 313,724 records. The videos are accompanied by their timestamped transcription, both in the original language and their translation into English
DOI: 10.15468/dl.rpkmb3
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Enteromius neefi (Greenwood, 1962)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((31.8862 -21.3285,30.5701 -20.3186,30.5701 -24.0715,35.5909 -24.0715,35.6007 -24.0157,35.6007 -23.8125,35.4969 -23.7035,35.6007 -23.165,35.6007 -22.9702,35.227 -22.2482,34.6862 -21.6944,34.013 -21.3095,33.5 -21.1593,32.9675 -21.1092,32.4352 -21.1612,31.8862 -21.3285))"
 ]
}

 The dataset includes 67 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024996-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jr5t47
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Gazella soemmerringii (Cretzschmar, 1828)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 18 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024997-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25592/uhhfdm.11609
title: An Account on The History of Wuli and The Jula People (Traders) (NCAC_RDD_TAPE_0163A)

description: <strong>History of Wuli</strong>


 Origin and Migration of the Jula people from Manding
 Baayo and Singate clans among the Jula people
 Seex Momodu Lamin Darame and his wars
 Mansa and Jula
 Trade between Africa and Europe
 Jula Jekere Baayo


<sup><em>Alternative names: Bayo, Singateh, Sheikh, Sheik, Sheick, Momodou, Dramme, Drammeh, Drame,  Sidibeh, Bakari, Bakary, Bakery, Kebba </em></sup>
description: Published by NCAC - National Digital Archive of The Gambia, initiated by University of Hamburg, Asia-Africa-Institute, Germany, funded by Gerda Henkel Foundation, Germany
DOI: 10.25592/uhhfdm.11608
title: An Account on The History of Wuli and The Jula People (Traders) (NCAC_RDD_TAPE_0163A)

description: <strong>History of Wuli</strong>


 Origin and Migration of the Jula people from Manding
 Baayo and Singate clans among the Jula people
 Seex Momodu Lamin Darame and his wars
 Mansa and Jula
 Trade between Africa and Europe
 Jula Jekere Baayo


<sup><em>Alternative names: Bayo, Singateh, Sheikh, Sheik, Sheick, Momodou, Dramme, Drammeh, Drame,  Sidibeh, Bakari, Bakary, Bakery, Kebba </em></sup>
description: Published by NCAC - National Digital Archive of The Gambia, initiated by University of Hamburg, Asia-Africa-Institute, Germany, funded by Gerda Henkel Foundation, Germany
DOI: 10.15468/dl.z48ssb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Enteromius neefi (Greenwood, 1962)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((27.1586 -33.5889,28.2048 -32.9007,25.5395 -32.9007,25.5395 -34.1098,25.6468 -34.1222,25.7787 -34.0734,25.7098 -33.9109,25.8639 -33.797,26.4806 -33.8473,27.1586 -33.5889))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024999-250525065834625/datasets/export for details.
DOI: 10.21227/4z69-mj45
title: "Modified city of Brasov air pollution dataset"

description: "Enhanced Data:Enhanced pollution data for Brasov, Romania (Aug-Oct 2014). Simulation experiments add processing deadlines, time sensitivity, and priority per WHO guidelines.Original Source: Pollution Measurements for Brasov: http:\/\/iot.ee.surrey.ac.uk:8080\/datasets.html#pollution"
DOI: 10.15468/dl.cy7tju
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (India, China, Nepal, Bhutan, Myanmar, Bangladesh, Pakistan, Afghanistan)",
 "TaxonKey is Thoressa astigmata (Swinhoe, 1890)"
 ]
}

 The dataset includes 12 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024998-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kspvpv
title: Occurrence Download

description: A dataset containing 1508 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Gongolaria barbata (Stackhouse) Kuntze"
 ]
}

 The dataset includes 1508 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025000-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15606758
title: Integrative Multi-Omics Reveals a Regulatory and Exhausted T-Cell Landscape in CLL and Identifies Galectin-9 as an Immunotherapy Target

description: Data set containing mass cytometry (CyTOF) data profiling T cells from 22 CLL LNs, plus 7 paired PB and 3 paired BM samples, as well as 13 reactive LNs (rLNs) using a panel of 42 antibodies designed to identify and characterize naïve, memory, effector, regulatory and exhausted T cells. The analysis comprises 5.29 x106 T cells, with a median of 51,937 cells per sample.The methodology used to produce and analyse this data is specified in the manuscript (Llaó-Cid, L. et al. Integrative Multi-Omics Reveals a Regulatory and Exhausted T-Cell Landscape in CLL and Identifies Galectin-9 as an Immunotherapy Target. Nat Commun (2025)).

Raw .fcs files were processed using the flowCore and CATALYST R packages. The uploaded .rds file contains the processed data of all samples.
DOI: 10.5281/zenodo.15606759
title: Integrative Multi-Omics Reveals a Regulatory and Exhausted T-Cell Landscape in CLL and Identifies Galectin-9 as an Immunotherapy Target

description: Data set containing mass cytometry (CyTOF) data profiling T cells from 22 CLL LNs, plus 7 paired PB and 3 paired BM samples, as well as 13 reactive LNs (rLNs) using a panel of 42 antibodies designed to identify and characterize naïve, memory, effector, regulatory and exhausted T cells. The analysis comprises 5.29 x106 T cells, with a median of 51,937 cells per sample.The methodology used to produce and analyse this data is specified in the manuscript (Llaó-Cid, L. et al. Integrative Multi-Omics Reveals a Regulatory and Exhausted T-Cell Landscape in CLL and Identifies Galectin-9 as an Immunotherapy Target. Nat Commun (2025)).

Raw .fcs files were processed using the flowCore and CATALYST R packages. The uploaded .rds file contains the processed data of all samples.
DOI: 10.15468/dl.5tbemy
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Nanger soemmerringii (Cretzschmar, 1828)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 96 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025002-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s3tur2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Enteromius neefi (Greenwood, 1962)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((18.2339 -32.5266,18.1411 -32.657,18.1007 -32.7021,18.0224 -32.6366,17.8923 -32.6419,17.754 -32.8255,17.7723 -32.9007,20.509 -32.9007,20.509 -28.5786,16.2782 -28.5786,16.4358 -28.7202,16.726 -29.1235,17.1957 -30.3752,17.6655 -31.1743,18.1322 -31.7679,18.2495 -32.2638,18.2339 -32.5266))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025003-250525065834625/datasets/export for details.
DOI: 10.15468/dl.3j358b
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Capra pygmea Linnaeus, 1758",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025008-250525065834625/datasets/export for details.
DOI: 10.15468/dl.jdwjqs
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (India, China, Nepal, Bhutan, Myanmar, Bangladesh, Pakistan, Afghanistan)",
 "TaxonKey is Thoressa cerata (Hewitson, 1876)"
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025004-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5b3e8m
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1970",
 "Year is less than or equal to 2000",
 "Month is null",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Batrachoseps luciae Jockusch, Yanev & Wake, 2001"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025007-250525065834625/datasets/export for details.
DOI: 10.15468/dl.p5sdc3
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Salix purpurea L.",
 "Year 1879-1879"
 ]
}

 The dataset includes 34 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025009-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrrjmr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Enteromius neefi (Greenwood, 1962)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.6372 -28.0032,16.2782 -28.5786,20.509 -28.5786,20.509 -24.0715,15.4933 -24.0715,15.4945 -24.1257,16.0509 -25.6631,15.6372 -28.0032))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025005-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15609064
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250606n Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250606n Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract