cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.dr7sqvb7d
title: Data for: Whole brain in situ mapping of neuronal activation in Drosophila during social behaviors and optogenetic stimulation

description: Monitoring neuronal activity at single-cell resolution in freely moving
 Drosophila engaged in social behaviors is challenging because of their
 small size and lack of transparency. Extant methods, such as Flyception,
 are highly invasive. Whole-brain calcium imaging in head-fixed, walking
 flies is feasible but the animals cannot perform the consummatory phases
 of social behaviors like aggression or mating under these conditions. This
 has left open the fundamental question of whether neurons identified as
 functionally important for such behaviors using loss- or gain-of-function
 screens are actually active during the natural performance of such
 behaviors, and if so during which phase(s). Here we perform brain-wide
 mapping of active cells expressing the Immediate Early Gene hr38 using a
 high-sensitivity/low background FISH amplification method called HCR-3.0.
 Using double-labeling for hr38 mRNA and for GFP, we describe the activity
 of several classes of aggression-promoting neurons during courtship and
 aggression, including P1a cells, an intensively studied population of
 male-specific interneurons. Using HI-FISH in combination with optogenetic
 activation of aggression-promoting neurons (opto-HI-FISH) we identify
 candidate downstream functional targets of these cells in a brain-wide,
 unbiased manner. Finally, we compare the activity of P1a neurons during
 sequential performance of courtship and aggression, using intronic vs.
 exonic hr38 probes to differentiate newly synthesized nuclear transcripts
 from cytoplasmic transcripts synthesized at an earlier time. These data
 provide evidence suggesting that different subsets of P1a neurons may be
 active during courtship vs. aggression. HI-FISH and associated methods may
 help to fill an important lacuna in the armamentarium of tools for neural
 circuit analysis in Drosophila.
description: # Data for: Whole brain in situ mapping of neuronal activation in
 Drosophila during social behaviors and optogenetic stimulation
 [https://doi.org/10.5061/dryad.dr7sqvb7d](https://doi.org/10.5061/dryad.dr7sqvb7d) ## Description of the data and file structure The zip file contains confocal images and calcium imaging data. ### Files and variables #### File: Hr38\_data\_for\_deposit.zip **Description:**  The folder structure is organized by figure numbers, with subfolders corresponding to figure panels used in the associated manuscript. Most confocal images are in 16-bit grayscale TIFF format. The data includes unmerged and uncropped images
DOI: 10.6073/pasta/439199557118bfbcfd3c2e22ae9eb369
title: Missouri reservoir profile data including temperature, depth, and oxygen profiles (1989-2022)

description: This dataset of limnological profiles starts in 1989 and is from 250 reservoirs in the state of Missouri (MO) in the USA collected by the University of Missouri Limnology Lab. Physical parameters derived from sensors include temperature and oxygen with depth. After 2017, sondes were upgraded to Yellow Springs Instruments (YSI) EXO3s; profiles include a range of physical, chemical, and biological parameters including depth, conductivity, pH, oxidative-reductive potential (ORP), chlorophyll a, phycocyanin (PC), phycoerythrin (PE), and turbidity. Most of the profiles were collected during the summer months (May-September) when the reservoirs were thermally stratified, but a few were taken during the rest of the year (October-April). The majority of profiles were taken at the deepest point in the reservoir directly up-reservoir of the dam. Sampling was conducted from a boat most of the time, but a few profiles were taken from bridges and docks. The bulk of the data come from the Statewide Lake Assessment Project (SLAP), funded by the Missouri Department of Natural Resources. The profiles are divided into a single file for 1989-2016 and then annual compiled datasets for 2017 and beyond. This data has been quality controlled for basic errors and any data outside of normal factory issued sensor ranges.
DOI: 10.15468/dl.8sy5s5
title: Occurrence Download

description: A dataset containing 307 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prionopelta dubia"
 ]
}

 The dataset includes 307 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004171-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ndehkh
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agonopsis chiloensis",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 25 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004172-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5xk3dc
title: Occurrence Download

description: A dataset containing 17842447 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Chile",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 17842447 records from 297 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004142-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.d51c5b0cv
title: Dynamic self-organization in fire ant rafts underpins collective longevity and threat responsiveness

description: Many living collectives must balance strategies between long-term energy
 conservation and short-term threat response; the ability for groups to
 dynamically self-organize into a variety of structures to address these
 needs is therefore essential. We show that fire ant Solenopsis invicta
 rafts which form buoyant bilayers in hostile flooded environments, adapt
 to conserve energy by separating into active and stationary phases. A
 simple kinetic model incorporating motility induced phase separation
 provides a useful framework to understand this transition, where ants form
 clusters by slowing down to participate in social interactions. We find
 that external stimuli either weakens or strengths these interactions. The
 former leads to dissolution of clusters and fast-mobilization of surface
 ants, revealing how clusters could serve a secondary purpose with rapid
 mobilization aiding exploration through formation of bridges. These
 results highlight how living collectives can adapt survival strategies
 even in the absence of central control or global knowledge.
description: # Supplementary Data
 [https://doi.org/10.5061/dryad.d51c5b0cv](https://doi.org/10.5061/dryad.d51c5b0cv) ## Description of the data and file structure All supplementary and extended raw video data were captured using an iPhone 12 with 1 second intervals. Supplementary videos are labeled according to how they appear in the supplementary information file. Raw video data is labeled according to the trial number and date they were conducted. Information pertaining to the colony used and type of experiment is outlined in the supplementary information Table S1. Code is stored in the matlab (.m) format. No separate packages are required to run. ### Files and variables #### File: SupplementaryVideos.zip **Description:** This archive contains supplementary video data referenced within the main manuscript and is labelled as **"SupplementalVideoNUM_STIMULUS.avi"** where **NUM** references the label number and** STIMULUS** references a brief description of the experiment type used in each video. #### File: RawSourceData.zip **Description:** This archive contains extended raw video source data for all trials conducted. Videos are labeled as **"TrialNUM_DD_MM_YYYY"** where** NUM** references the trial number and the date of when the trial was conducted is given in the format (DD/MM/YYYY). ## Code/software MATLAB R2023b was used for the provided script. No additional packages, scripts or software is needed to run the given script. ## Access information N/A
DOI: 10.5061/dryad.02v6wwqcx
title: GWAS and QTLanalysis for 124 individual traits

description: Investigating the genetic architecture of important agronomic traits in
 grapevine, like grape quality and resilience to abiotic stress, has been
 hampered by bottlenecks in genotyping and phenotyping. Here, we developed
 a high-density 200K single nucleotide polymorphism array and validated its
 effectiveness by genotyping 471 accessions from three F1 breeding
 populations. We developed a high-throughput grape phenotyping tool that
 accurately captures berry color, shape and size. By integrating data from
 the two platforms, associated loci were identified over three growing
 seasons. Association mapping, and haplotype analysis identified novel loci
 and candidate genes for berry shape (bHLH017), soluble sugars (ACT) and
 organic acids (ALTM1 and FUSC2), as well as vine cold tolerance (NAC08),
 and fine mapped the flower sex determination locus. Furthermore, we
 validated the functional role of NAC08, demonstrating that it activated
 the expression of RFS6 to increase raffinose levels and confer cold
 tolerance. Together, these augmented tools, the integrated data, and novel
 loci establish a better foundation for trait aggregation that will enhance
 breeding efficiency and boost the development of high-quality grape
 varieties.
description: # GWAS and QTLanalysis for 124 individual traits
 [https://doi.org/10.5061/dryad.02v6wwqcx](https://doi.org/10.5061/dryad.02v6wwqcx) ## Description of the data and file structure HTP was carried out for three years (2020, 2021, and 2022) of berries produced by the BF × Y73 F1 population. We verified the distributions of all traits in the population and conducted genome wide association studies (GWAS) and quantitative trait locus (QTL) analysis for 124 individual traits related to berry morphometry and color, as well as 4 composite traits (Figures EV1 and EV2, Supporting Information). The Expanded Figure EV1 (Figure EV1) and Expanded Figure EV2 (Figure EV2) have been submitted. ### Files and variables #### File: Expanded\_View\_Figure\_1.pdf **Description:** GWAS results of 124 individual traits #### File: Expanded\_View\_Figure\_2.pdf **Description:** QTL results  of 124 individual traits ## Code/software A PDF reader (such as Adobe Acrobat Reader or any equivalent software) is required to view the PDF file containing the association results. No additional software, code, or packages are needed to access this file. ## Access information           Other publicly accessible locations of the data: *  There are no other publicly accessible locations for the data at this time. Data was derived from the following sources: - The data was not derived from other sources.
DOI: 10.15468/dl.enrmna
title: Occurrence Download

description: A dataset containing 2078372 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "StateProvince is one of (Cundinamarca)",
 "GadmGid is one of (COL.15_2)",
 "TaxonKey is one of (Animalia [GBIF Backbone Taxonomy])"
 ]
 }
 ]
}

 The dataset includes 2078372 records from 438 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004140-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v7skfp
title: Occurrence Download

description: A dataset containing 416 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bovichtus argentinus",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 416 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004173-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.umq9mr
title: Occurrence Download

description: A dataset containing 3280 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Balanidae, Serpulidae, Watersiporidae, Styelidae, Pennariidae, Mytilidae, Teredinidae, Ulvaceae, Caulerpaceae, Bougainvilliidae, Syllidae, Hydractiniidae, Varunidae, Bolinopsidae)",
 "Geometry POLYGON ((33.925781 30.297018, 30.849609 30.221102, 36.738281 17.978733, 42.539063 11.867351, 46.054688 9.362353000000001, 53.613281 12.297068, 64.6875 21.616579, 66.269531 25.403585, 65.302734 29.993002, 50.976563 32.398516, 33.925781 30.297018))"
 ]
}

 The dataset includes 3280 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004174-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6pxhzk
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Handeliodendron bodinieri",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 20 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006539-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e9c3mr
title: Occurrence Download

description: A dataset containing 104381 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Mareca sibilatrix"
 ]
}

 The dataset includes 104381 records from 132 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006521-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8knp4j
title: Occurrence Download

description: A dataset containing 2849948 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Mareca penelope"
 ]
}

 The dataset includes 2849948 records from 1291 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006518-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hgvgc5
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Haplocoelopsis africana",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 47 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006540-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kd3nt8
title: Occurrence Download

description: A dataset containing 247 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Saiga tatarica"
 ]
}

 The dataset includes 247 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006542-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yab2jj
title: Occurrence Download

description: A dataset containing 13319 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((14.16751398 47.67898893, 14.55440852 47.67898893, 14.55440852 47.85659594, 14.16751398 47.85659594, 14.16751398 47.67898893))",
 "TaxonKey is one of (Bombina variegata, Actitis hypoleucos, Aegolius funereus, Aquila chrysaetos, Bonasa bonasia, Bubo bubo, Caprimulgus europaeus, Ciconia nigra, Circaetus gallicus, Columba oenas, Dendrocopos leucotos, Dryocopus martius, Falco peregrinus, Ficedula albicollis, Ficedula hypoleuca, Ficedula parva, Glaucidium passerinum, Lagopus muta, Lanius collurio, Muscicapa striata, Pernis apivorus, Picoides tridactylus, Picus canus, Scolopax rusticola, Tetrao tetrix, Tetrao urogallus, Cottus gobio, Austropotamobius torrentium, Cucujus cinnaberinus, Euphydryas aurinia, Euphydryas maturna, Euplagia quadripunctaria, Rosalia alpina, Stephanopachys substriatus, Barbastella barbastellus, Lutra lutra, Lynx lynx, Myotis bechsteinii, Myotis emarginatus, Myotis myotis, Rhinolophus hipposideros, Ursus arctos, Buxbaumia viridis, Cypripedium calceolus, Dicranum viride, Scapania carinthiaca)"
 ]
}

 The dataset includes 13319 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006541-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.98xpt9
title: Occurrence Download

description: A dataset containing 24450 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((4.37488 50.69189,4.50689 50.69189,4.50689 50.74319,4.37488 50.74319,4.37488 50.69189))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 24450 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006543-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xsg8yu
title: Occurrence Download

description: A dataset containing 22991 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Pilea microphylla"
 ]
}

 The dataset includes 22991 records from 465 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006544-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/ykkhgxy9dz
title: Secularity Scale for Muslim

description: Description The main purpose of gathering this dataset is to develop a psychometrically sound and quick-to-apply scale that can be used to measure the degree of secularity among Muslims. The development and validation of a 25-item Secularity Scale comprise five studies. In the first study, a 90-item inventory was applied to a pilot group of 199 individuals. In the second study, an inventory was applied to 1573 university students for the exploratory factor analysis, yielding a two-factor structure with an internal reliability of 0.975 for Daily Life factor and 0.952 for Faith&Prayer factor. In the third study, a confirmatory factor analysis was performed with 4391 individuals and a structure that can be deemed very solid was found with fit indices of CFI: 0.961, TLI: 0.957, RMSEA: 0.053, and SRMR: 0.034. The measurement invariance was also examined in terms of gender, nationality, age, place of residence, and educational background where it was discovered that the scale can be used for various populations. The fourth study revealed that the scale has convergent validity, and a high test-retest result (r = .91, p&lt;.001). The final data were collected to analyse the discriminant validity of the study in line with the recommendations of the reviewers. How were the data gathered? The 90-item inventory was applied to a group of 199 individuals. The sample consisted of students from the Faculty of Arts and Sciences and Faculty of Islamic Sciences at a university in Central Anatolia, as well as 32 individuals known by the researchers to have a secular background. For Exploratory Factor Analysis (EFA), the aim was to reach students studying in several faculties at a university located in Central Anatolia using stratified purposeful sampling. For Confirmatory Factor Analysis, a multifaceted approach to participant recruitment was employed to reach a more diverse sample. In this context, the purpose of the study was explained in detail to a group of students and they were asked to include individuals from their own extended families of various educational levels and ages. Approximately 150 students helped to collect data for the present study from their immediate circle and received course credit for it. On the other hand, in order to contact international Muslim students, academics who teach those students’ courses were contacted. For the fourth study, data was collected in two instances. 555 individuals were reached in the first phase of data collection, and Convergent Validity was carried out. After 6 weeks, 138 of the 555 participants were contacted again, and the test-retest were checked. Finally, after the reviewers' evaluations, new data were gathered to examine its discriminant and known-group validities. Participants were selected using a convenience sampling method. I reached out to individuals who were either studying at or graduated from a theology faculty by collaborating with academics from five different universities.
DOI: 10.6084/m9.figshare.25298809.v1
title: ST-MLST, <i>spa</i>-types, cgMLST and NCBI AMRFinderPlus (SeqSphere+ v 9.0)

description: Genome assemblies of 98 CA-MRSA isolates causing infections and 19 CA-MRSA isolates from colonization, were uploaded to Ridom SeqSphere+ v 9.0 (Münster, Germany) for a gene-by-gene comparison using a cgMLST scheme of 1,861 targets (https://www.cgmlst.org/ncs/schema/141106/) and to obtain ST-MLST and <i>spa</i>-types.
DOI: 10.6084/m9.figshare.5941306.v1
title: Survey Data

description: Full quantitative survey data from Daira's evaluation of Mozilla Science Lab Programs. The qualitative word responses are excluded for data privacy reasons.
DOI: 10.17632/yts8495x6h
title: Data for: Does Trade reduce Infant Mortality? Evidence from Sub-Saharan Africa

description: Dataset creation for the paper.
DOI: 10.4121/22000316.v1
title: Data of PhD. Dissertation: Understanding Seal Integrity - Sealing and Closing of Plastic Packaging

description: Data of PhD. Dissertation by Ilknur Ilhan - University of Twente - Includes tests done for revealing the parameters behind the seal integrity issues in flexible packaging. <br>
DOI: 10.6084/m9.figshare.19372322.v1
title: GToTree ToL example data

description: The original data and code for the GToTree ToL example: https://github.com/AstrobioMike/GToTree/wiki/example-usage#tol-example