cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21227/tp76-6r71
title: XGBoost based PSO for DAB DC-DC converter triple phase shift modulation

description: Dual active bridge (DAB) converter is an important converter for electric vehicles, energy storage systems. Data sets are introduced to control the DC-DC power control. Triple phase-shift of DAB is controlled by the range of zero voltage switching. Optimal switching to reduce high current stress DC-DC converter is In presented data sets are used with python program to execute the different stages of machine learning. Performance of all stages are well addressed each data output file. Multiple phase shift angles are used for a triple phase-shift control algorithm to achieve different operational modes.  For optimal switching duty cycles D0, D1 and D2, output of machine learning is trained and tested. Test results are fed to PSO to obtain the optimal switching duty cycles. The proposed extreme gradient boosting-based PSO triple phase-shift modulation, XGB −PSO−TPSM is trained and tested. Performance of proposed XGB −PSO−TPSM is exhibited by a many data sets for achieving reduced converter current stress. Better power control is assured by the XGB −PSO−TPSM is trained data in renewable energy system. Electric vehicle is one the best suitable and demanded application of DAB converter to ensure proper power control.
DOI: 10.5281/zenodo.14886916
title: DeepFake Paraphrased

description: Dataset Overview:------------------



This dataset contains paraphrased and original text formed from the DeepFake Dataset / MAGE

The dataset includes both human and machine-generated text using LLAMA, NeoX20B, OPT30B, GPT

Additionally, a portion of the AI-generated text has been paraphrased using a Pegasus-based paraphraser.



Paraphrasing Information:--------------------------



50% of the AI-generated text in the dataset is paraphrased, while the other half remains unchanged as originally generated.

The selection of AI text for paraphrasing is random.



Dataset Structure:------------------Each file in the dataset contains the following required columns:



original_text: The non-paraphrased text.

label:   - 1: Human-generated text   - 0: AI-generated text

is_selected:   - 1: The AI text was selected for paraphrasing   - 0: The text was not selected for paraphrasing

text: The paraphrased version of the AI-generated text (if applicable), non-paraphrased otherwise.
DOI: 10.5281/zenodo.14886917
title: DeepFake Paraphrased

description: Dataset Overview:------------------



This dataset contains paraphrased and original text formed from the DeepFake Dataset / MAGE

The dataset includes both human and machine-generated text using LLAMA, NeoX20B, OPT30B, GPT

Additionally, a portion of the AI-generated text has been paraphrased using a Pegasus-based paraphraser.



Paraphrasing Information:--------------------------



50% of the AI-generated text in the dataset is paraphrased, while the other half remains unchanged as originally generated.

The selection of AI text for paraphrasing is random.



Dataset Structure:------------------Each file in the dataset contains the following required columns:



original_text: The non-paraphrased text.

label:   - 1: Human-generated text   - 0: AI-generated text

is_selected:   - 1: The AI text was selected for paraphrasing   - 0: The text was not selected for paraphrasing

text: The paraphrased version of the AI-generated text (if applicable), non-paraphrased otherwise.
DOI: 10.6084/m9.figshare.28442417
title: supplementary data--BHB15-6.xlsx

description: Organic carbon records from core BHB15-6 in the Bohai Sea, China.
DOI: 10.15468/dl.3xcu2v
title: Occurrence Download

description: A dataset containing 372 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Viet Nam",
 "TaxonKey is Mycteria leucocephala"
 ]
}

 The dataset includes 372 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068232-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6qupmt
title: Occurrence Download

description: A dataset containing 880 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is one of (Chinese Taipei, China)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "VerbatimScientificName is Tragopan caboti"
 ]
}

 The dataset includes 880 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068234-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.txw8sf
title: Occurrence Download

description: A dataset containing 13755 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thalassarche carteri",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-180 -90, 180 -90, 180 90, -180 90, -180 -90))"
 ]
}

 The dataset includes 13755 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068235-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wrq82j
title: Occurrence Download

description: A dataset containing 26041 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tympanuchus cupido",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-180 -90, 180 -90, 180 90, -180 90, -180 -90))"
 ]
}

 The dataset includes 26041 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068236-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hadbta
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is one of (Chinese Taipei, China)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "VerbatimScientificName is Tragopan satyra"
 ]
}

 The dataset includes 55 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068237-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dc6wsx
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Viet Nam",
 "TaxonKey is Mycteria leucocephala"
 ]
}

 The dataset's 1 records were derived from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068233-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f3cef8
title: Occurrence Download

description: A dataset containing 2371 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is one of (Chinese Taipei, China)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "VerbatimScientificName is Tringa guttifer"
 ]
}

 The dataset includes 2371 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068238-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5ndbjm
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vini ultramarina",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-180 -90, 180 -90, 180 90, -180 90, -180 -90))"
 ]
}

 The dataset includes 83 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068240-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.11357432
title: Antiviral potential of human IFN-α subtypes against influenza A H3N2 infection in human lung explants reveals subtype-specific activities

description: Influenza is an acute respiratory infection causing high morbidity and mortality in annual outbreaks worldwide. Antiviral drugs are limited and pose the risk of resistance development, calling for new treatment options. IFN-α subtypes are immune-stimulatory cytokines with strong antiviral activities against IAV <i>in vitro</i> and <i>in vivo.</i> However, the clinical use of IFN-α2, the only licensed subtype of this multi-gene family, could not prevent or limit IAV infections in humans. However, the other subtypes were not investigated. Therefore, this study evaluated the induction and antiviral potential of all human IFN-α subtypes during H3N2 IAV infection in human lung explants. We found that subtypes with weak antiviral activities were preferentially induced during IAV infection in human lungs. Intriguingly, non-induced subtypes α16, α5 and α4 suppressed viral replication up to 230-fold more efficiently than α2. Furthermore, our results demonstrate that subtypes with stronger antiviral activities induce higher expression of IAV-specific restriction factors and that MxA expression is a determinant of the subtype-specific antiviral activity towards H3N2 IAV. These results corroborate that IFN-α subtypes exhibit differential antiviral activities and emphasize that subtypes α16, α5 and α4 should be further investigated for the prevention and treatment of severe infections with seasonal H3N2 IAV.
DOI: 10.6084/m9.figshare.11357432.v3
title: Antiviral potential of human IFN-α subtypes against influenza A H3N2 infection in human lung explants reveals subtype-specific activities

description: Influenza is an acute respiratory infection causing high morbidity and mortality in annual outbreaks worldwide. Antiviral drugs are limited and pose the risk of resistance development, calling for new treatment options. IFN-α subtypes are immune-stimulatory cytokines with strong antiviral activities against IAV <i>in vitro</i> and <i>in vivo.</i> However, the clinical use of IFN-α2, the only licensed subtype of this multi-gene family, could not prevent or limit IAV infections in humans. However, the other subtypes were not investigated. Therefore, this study evaluated the induction and antiviral potential of all human IFN-α subtypes during H3N2 IAV infection in human lung explants. We found that subtypes with weak antiviral activities were preferentially induced during IAV infection in human lungs. Intriguingly, non-induced subtypes α16, α5 and α4 suppressed viral replication up to 230-fold more efficiently than α2. Furthermore, our results demonstrate that subtypes with stronger antiviral activities induce higher expression of IAV-specific restriction factors and that MxA expression is a determinant of the subtype-specific antiviral activity towards H3N2 IAV. These results corroborate that IFN-α subtypes exhibit differential antiviral activities and emphasize that subtypes α16, α5 and α4 should be further investigated for the prevention and treatment of severe infections with seasonal H3N2 IAV.
DOI: 10.6084/m9.figshare.7937387
title: Cumulative acquisition of pathogenicity islands has shaped virulence potential and contributed to the emergence of LEE-negative Shiga toxin-producing <i>Escherichia coli</i> strains

description: Shiga toxin-producing <i>Escherichia coli</i> (STEC) are foodborne pathogens causing severe gastroenteritis, which may lead to hemolytic uremic syndrome. The Locus of Enterocyte Effacement (LEE), a Pathogenicity Island (PAI), is a major determinant of intestinal epithelium attachment of a group of STEC strains; however, the virulence repertoire of STEC strains lacking LEE, has not been fully characterized. The incidence of LEE-negative STEC strains has increased in several countries, highlighting the relevance of their study. In order to gain insights into the basis for the emergence of LEE-negative STEC strains, we performed a large-scale genomic analysis of 367 strains isolated worldwide from humans, animals, food and the environment. We identified uncharacterized genomic islands, including two PAIs and one Integrative Conjugative Element. Additionally, the Locus of Adhesion and Autoaggregation (LAA) was the most prevalent PAI among LEE-negative strains and we found that it contributes to colonization of the mice intestine. Our comprehensive and rigorous comparative genomic and phylogenetic analyses suggest that the accumulative acquisition of PAIs has played an important, but currently unappreciated role, in the evolution of virulence in these strains. This study provides new knowledge on the pathogenicity of LEE-negative STEC strains and identifies molecular markers for their epidemiological surveillance.
DOI: 10.6084/m9.figshare.7937387.v4
title: Cumulative acquisition of pathogenicity islands has shaped virulence potential and contributed to the emergence of LEE-negative Shiga toxin-producing <i>Escherichia coli</i> strains

description: Shiga toxin-producing <i>Escherichia coli</i> (STEC) are foodborne pathogens causing severe gastroenteritis, which may lead to hemolytic uremic syndrome. The Locus of Enterocyte Effacement (LEE), a Pathogenicity Island (PAI), is a major determinant of intestinal epithelium attachment of a group of STEC strains; however, the virulence repertoire of STEC strains lacking LEE, has not been fully characterized. The incidence of LEE-negative STEC strains has increased in several countries, highlighting the relevance of their study. In order to gain insights into the basis for the emergence of LEE-negative STEC strains, we performed a large-scale genomic analysis of 367 strains isolated worldwide from humans, animals, food and the environment. We identified uncharacterized genomic islands, including two PAIs and one Integrative Conjugative Element. Additionally, the Locus of Adhesion and Autoaggregation (LAA) was the most prevalent PAI among LEE-negative strains and we found that it contributes to colonization of the mice intestine. Our comprehensive and rigorous comparative genomic and phylogenetic analyses suggest that the accumulative acquisition of PAIs has played an important, but currently unappreciated role, in the evolution of virulence in these strains. This study provides new knowledge on the pathogenicity of LEE-negative STEC strains and identifies molecular markers for their epidemiological surveillance.
DOI: 10.6084/m9.figshare.11357432.v2
title: Antiviral potential of human IFN-α subtypes against influenza A H3N2 infection in human lung explants reveals subtype-specific activities

description: Influenza is an acute respiratory infection causing high morbidity and mortality in annual outbreaks worldwide. Antiviral drugs are limited and pose the risk of resistance development, calling for new treatment options. IFN-α subtypes are immune-stimulatory cytokines with strong antiviral activities against IAV <i>in vitro</i> and <i>in vivo.</i> However, the clinical use of IFN-α2, the only licensed subtype of this multi-gene family, could not prevent or limit IAV infections in humans. However, the other subtypes were not investigated. Therefore, this study evaluated the induction and antiviral potential of all human IFN-α subtypes during H3N2 IAV infection in human lung explants. We found that subtypes with weak antiviral activities were preferentially induced during IAV infection in human lungs. Intriguingly, non-induced subtypes α16, α5 and α4 suppressed viral replication up to 230-fold more efficiently than α2. Furthermore, our results demonstrate that subtypes with stronger antiviral activities induce higher expression of IAV-specific restriction factors and that MxA expression is a determinant of the subtype-specific antiviral activity towards H3N2 IAV. These results corroborate that IFN-α subtypes exhibit differential antiviral activities and emphasize that subtypes α16, α5 and α4 should be further investigated for the prevention and treatment of severe infections with seasonal H3N2 IAV.
DOI: 10.6084/m9.figshare.7937387.v3
title: Cumulative acquisition of pathogenicity islands has shaped virulence potential and contributed to the emergence of LEE-negative Shiga toxin-producing <i>Escherichia coli</i> strains

description: Shiga toxin-producing <i>Escherichia coli</i> (STEC) are foodborne pathogens causing severe gastroenteritis, which may lead to hemolytic uremic syndrome. The Locus of Enterocyte Effacement (LEE), a Pathogenicity Island (PAI), is a major determinant of intestinal epithelium attachment of a group of STEC strains; however, the virulence repertoire of STEC strains lacking LEE, has not been fully characterized. The incidence of LEE-negative STEC strains has increased in several countries, highlighting the relevance of their study. In order to gain insights into the basis for the emergence of LEE-negative STEC strains, we performed a large-scale genomic analysis of 367 strains isolated worldwide from humans, animals, food and the environment. We identified uncharacterized genomic islands, including two PAIs and one Integrative Conjugative Element. Additionally, the Locus of Adhesion and Autoaggregation (LAA) was the most prevalent PAI among LEE-negative strains and we found that it contributes to colonization of the mice intestine. Our comprehensive and rigorous comparative genomic and phylogenetic analyses suggest that the accumulative acquisition of PAIs has played an important, but currently unappreciated role, in the evolution of virulence in these strains. This study provides new knowledge on the pathogenicity of LEE-negative STEC strains and identifies molecular markers for their epidemiological surveillance.
DOI: 10.6084/m9.figshare.8847455
title: Comprehensive subspecies identification of 175 nontuberculous mycobacteria species based on 7547 genomic profiles

description: The prevalence of nontuberculous mycobacteria (NTM) pulmonary diseases has been increasing worldwide. NTM consist of approximately 200 species and distinguishing between them at the subspecies level is critical to treatment. In this study, we sequenced 63 NTM genomes, 27 of which were newly determined, by hybrid assembly using sequencers from Illumina and Oxford Nanopore Technologies (ONT). This analysis expanded the available genomic data to 175 NTM species and redefined their subgenus classification. We also developed a novel multi-locus sequence typing (MLST) database based on 184 genes from 7547 assemblies and an identification software, mlstverse, which can also be used for detecting other bacteria given a suitable MLST database. This method showed the highest sensitivity and specificity amongst conventional methods and demonstrated the capacity for rapid detection of NTM, 10 min of sequencing of the ONT MinION being sufficient. Application of this methodology could improve disease epidemiology and increase the cure rates of NTM diseases.
DOI: 10.6084/m9.figshare.8847455.v3
title: Comprehensive subspecies identification of 175 nontuberculous mycobacteria species based on 7547 genomic profiles

description: The prevalence of nontuberculous mycobacteria (NTM) pulmonary diseases has been increasing worldwide. NTM consist of approximately 200 species and distinguishing between them at the subspecies level is critical to treatment. In this study, we sequenced 63 NTM genomes, 27 of which were newly determined, by hybrid assembly using sequencers from Illumina and Oxford Nanopore Technologies (ONT). This analysis expanded the available genomic data to 175 NTM species and redefined their subgenus classification. We also developed a novel multi-locus sequence typing (MLST) database based on 184 genes from 7547 assemblies and an identification software, mlstverse, which can also be used for detecting other bacteria given a suitable MLST database. This method showed the highest sensitivity and specificity amongst conventional methods and demonstrated the capacity for rapid detection of NTM, 10 min of sequencing of the ONT MinION being sufficient. Application of this methodology could improve disease epidemiology and increase the cure rates of NTM diseases.
DOI: 10.6084/m9.figshare.7937435
title: Highly pathogenic H5N6 avian influenza virus outbreak in <i>Pavo cristatus</i> in Jiangxi Province, China

description: Highly pathogenic avian influenza (HPAI) is a persistent threat to poultry, wild birds, humans, and other mammals. The continually evolving HPAI H5N6 virus has induced great losses in breeding industries in growing regions around the world. In this study, we confirmed an outbreak of the HPAI H5N6 virus in captive <i>Pavo cristatus</i> in Jiangxi Province, China. The causative agents H5N6 viruses were isolated and designated JS01, JS02, and K10. Animal experiments showed that all three isolates exhibited high pathogenicity to chickens, but they need adaption to effectively infect mice. A phylogenetic analysis showed that all three isolates were clustered in H5 clade 2.3.4.4c. No novel genetic reassortant was found in JS01, JS02, and K10 viruses. It was estimated that JS01, JS02, and K10 H5N6 viruses were direct descendants of the H5N6 virus circulating in South of China. The estimated divergence time from tMRCAs was anywhere between May 2014 to June 2016. Although the number of outbreaks of avian influenza decreased significantly in 2018, the threat from avian influenza to public health remains serious. Enhanced active surveillance is required to monitor the transmission and evolution of H5 influenza viruses.
DOI: 10.6084/m9.figshare.7937435.v3
title: Highly pathogenic H5N6 avian influenza virus outbreak in <i>Pavo cristatus</i> in Jiangxi Province, China

description: Highly pathogenic avian influenza (HPAI) is a persistent threat to poultry, wild birds, humans, and other mammals. The continually evolving HPAI H5N6 virus has induced great losses in breeding industries in growing regions around the world. In this study, we confirmed an outbreak of the HPAI H5N6 virus in captive <i>Pavo cristatus</i> in Jiangxi Province, China. The causative agents H5N6 viruses were isolated and designated JS01, JS02, and K10. Animal experiments showed that all three isolates exhibited high pathogenicity to chickens, but they need adaption to effectively infect mice. A phylogenetic analysis showed that all three isolates were clustered in H5 clade 2.3.4.4c. No novel genetic reassortant was found in JS01, JS02, and K10 viruses. It was estimated that JS01, JS02, and K10 H5N6 viruses were direct descendants of the H5N6 virus circulating in South of China. The estimated divergence time from tMRCAs was anywhere between May 2014 to June 2016. Although the number of outbreaks of avian influenza decreased significantly in 2018, the threat from avian influenza to public health remains serious. Enhanced active surveillance is required to monitor the transmission and evolution of H5 influenza viruses.