cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/b9acuh
title: Two new species of Elachistocleis Parker, 1927 (Anura: Microhylidae: Gastrophryninae) from Colombia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Acosta-Galvis, Andrés R., Tonini, João F. R., De Sá, Rafael O. (2022): Two new species of Elachistocleis Parker, 1927 (Anura: Microhylidae: Gastrophryninae) from Colombia. Zootaxa 5099 (5): 527-548, DOI: 10.11646/zootaxa.5099.5.2AbstractThe genus Elachistocleis consists of small to medium size species of Neotropical microhylids. It is the second largest genus of New World microhylids and an important component of the anuran diversity in the Neotropical region. Herein, based on morphological, acoustical, and molecular evidence, we describe two new species and their advertisement calls. The new species have reticulated venter and inhabit the Orinoco basin of Colombia.
DOI: 10.25582/data.2024-04.3085779/2552630
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3085787/2552631
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3085788/2552632
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3085789/2552633
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3085791/2552634
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3085792/2552635
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3085794/2552636
title: Data for EMSL Project 51287 from April 2024
DOI: 10.6084/m9.figshare.26642776
title: Additional file 1 of Harnessing redox proteomics to study metabolic regulation and stress response in lignin-fed Rhodococci

description: Additional file 1: Table S1. Global protein abundances. Table S2. Proteins with significantly changed abundance. Table S3. Quantification of unique HPE-IAM alkylated cysteine sites. Table S4. Cys sites with significantly changed oxidation level.
DOI: 10.6084/m9.figshare.26642776.v1
title: Additional file 1 of Harnessing redox proteomics to study metabolic regulation and stress response in lignin-fed Rhodococci

description: Additional file 1: Table S1. Global protein abundances. Table S2. Proteins with significantly changed abundance. Table S3. Quantification of unique HPE-IAM alkylated cysteine sites. Table S4. Cys sites with significantly changed oxidation level.
DOI: 10.15468/dl.k9sqtf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((149.395832 -32.234485, 149.395832 -32.236731, 149.400324 -32.236731, 149.400324 -32.234485, 149.395832 -32.234485)), ((149.400324 -32.236731, 149.400324 -32.243468, 149.404815 -32.243468, 149.404815 -32.238977, 149.402569 -32.238977, 149.402569 -32.236731, 149.400324 -32.236731)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065689-240626123714530/datasets/export for details.
DOI: 10.15468/dl.d53scu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((146.090016 -36.566631, 146.090016 -36.568877, 146.092262 -36.568877, 146.092262 -36.566631, 146.090016 -36.566631))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065688-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26642869
title: Additional file 2 of Elevated rates of dietary generalization in eusocial lineages of the secondarily herbivorous bees

description: Additional file 2.
DOI: 10.6084/m9.figshare.26642869.v1
title: Additional file 2 of Elevated rates of dietary generalization in eusocial lineages of the secondarily herbivorous bees

description: Additional file 2.
DOI: 10.15468/dl.r25yhc
title: Occurrence Download

description: A dataset containing 273678 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Country mismatch, The taxon ID was not used in backbone matching, The scientific name differs on the record from that found in the checklist, The backbone match found using the taxon IDs differs from what would be found if using the scientific names , Individual count invalid, Individual count conflicts with occurrence status)",
 "OccurrenceStatus is Present",
 "TaxonKey is Acanthuridae"
 ]
}

 The dataset includes 273678 records from 106 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065671-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26588028
title: Additional file 1 of Characterization of oral bacterial and fungal microbiome in recovered COVID-19 patients

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26642902
title: Additional file 2 of Mountain agropastoralism: traditional practices, institutions and pressures in the Indian Trans-Himalaya of Ladakh

description: Additional file 2. Sheep Husbandry Census Record Data (Centre: Meeru and Sakti) 2020-21. Livestock population as per 20th Livestock Census 2019 (Kharu Block).
DOI: 10.6084/m9.figshare.26642902.v1
title: Additional file 2 of Mountain agropastoralism: traditional practices, institutions and pressures in the Indian Trans-Himalaya of Ladakh

description: Additional file 2. Sheep Husbandry Census Record Data (Centre: Meeru and Sakti) 2020-21. Livestock population as per 20th Livestock Census 2019 (Kharu Block).
DOI: 10.15468/dl.3msswk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.43463 -32.236731, 148.43463 -32.238977, 148.436876 -32.238977, 148.436876 -32.236731, 148.43463 -32.236731))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065691-240626123714530/datasets/export for details.
DOI: 10.15468/dl.v87m67
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((144.286639 -36.559894, 144.286639 -36.56214, 144.277656 -36.56214, 144.277656 -36.564385, 144.27541 -36.564385, 144.27541 -36.568877, 144.282148 -36.568877, 144.282148 -36.564385, 144.286639 -36.564385, 144.286639 -36.568877, 144.293377 -36.568877, 144.293377 -36.571123, 144.304606 -36.571123, 144.304606 -36.564385, 144.300114 -36.564385, 144.300114 -36.56214, 144.291131 -36.56214, 144.291131 -36.559894, 144.286639 -36.559894), (144.293377 -36.568877, 144.293377 -36.564385, 144.297868 -36.564385, 144.297868 -36.568877, 144.293377 -36.568877)), ((144.293377 -36.571123, 144.282148 -36.571123, 144.282148 -36.575614, 144.279902 -36.575614, 144.279902 -36.571123, 144.27541 -36.571123, 144.27541 -36.582352, 144.282148 -36.582352, 144.282148 -36.57786, 144.293377 -36.57786, 144.293377 -36.571123)))"
 ]
}

 The dataset includes 96 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065690-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13318322
title: Elbing Ordens-Apotheke (ca. 1924/1947)

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.5281/zenodo.13318332
title: Elbing Apotheke Zum Schwarzen Adler (ca. 1924/1947)

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.6084/m9.figshare.26588028.v1
title: Additional file 1 of Characterization of oral bacterial and fungal microbiome in recovered COVID-19 patients

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26564034.v1
title: Additional file 2 of β-actin mediated H3K27ac changes demonstrate the link between compartment switching and enhancer-dependent transcriptional regulation

description: Additional file 2:Table S1. β-actin WTvsKO RNA-Seq and Enhancer Annotation Data. Table S2. MEFvsESC RNA-Seq and Enhancer Annotation Data. Table S3. β-actin WTvsKO Differential Analysis of ATAC peaks. Table S4. MEFvsESC Differential Analysis of ATAC peaks. Table S5. β-actin WTvsKOvsKO-actin Differential Analysis of H3K27ac peaks. Table S6. MEFvsESC Differential Analysis of H3K27ac peaks.
DOI: 10.15468/dl.vm3f5q
title: Occurrence Download

description: A dataset containing 316 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (CHN.31.1_1, CHN.31.3_1, CHN.31.2_1, CHN.31.8_1, CHN.31.6_1)",
 "TaxonKey is Anser albifrons (Scopoli, 1769)"
 ]
}

 The dataset includes 316 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065692-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/7shf34snd3.1
title: Data for MVGT-iSL: a multi-view graph transformer model for individual sample synthetic lethality prediction

description: Here stores the data we used to train and evaluate our MVGT-iSL model for individual sample-specific synthetic lethality prediction.
DOI: 10.17632/7shf34snd3.2
title: Data for Synthetic lethal connectivity and graph transformer improve synthetic lethality prediction

description: Here stores the data we used to train and evaluate our MLEC-iSL model for individual sample-specific synthetic lethality prediction.

There are two types of features used in our model: omics features and biological networks. For omics features, there are two CCLE profiles (expression and essentiality) and four cell-specific features (expression, essentiality, mutation and copy number) considered in our model. As for network features, we incorporate physical protein-protein interaction (PPI) network, genetic interaction network and pathway network.
DOI: 10.6084/m9.figshare.26643010
title: Additional file 8 of The role of leisure-time physical activity in maintaining cervical lordosis after anterior cervical fusion and its impact on the motor function in patients with hirayama disease: a retrospective cohort analysis

description: Supplementary Material 8: Raw data
DOI: 10.6084/m9.figshare.26643010.v1
title: Additional file 8 of The role of leisure-time physical activity in maintaining cervical lordosis after anterior cervical fusion and its impact on the motor function in patients with hirayama disease: a retrospective cohort analysis

description: Supplementary Material 8: Raw data
DOI: 10.15468/dl.v8m35h
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.420536 -32.238977, 149.420536 -32.243468, 149.425027 -32.243468, 149.425027 -32.238977, 149.420536 -32.238977))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065693-240626123714530/datasets/export for details.
DOI: 10.15468/dl.t7dkqf
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((144.758257 -36.571123, 144.758257 -36.582352, 144.760503 -36.582352, 144.760503 -36.571123, 144.758257 -36.571123))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065694-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26643058
title: Additional file 2 of Development of a predictive model to distinguish prostate cancer from benign prostatic hyperplasia by integrating serum glycoproteomics and clinical variables

description: Additional file 2: Table S1. List of heavy peptides assayed by PRM with relative retention times (RT) and solubilization conditions. Table S2. List of heavy peptides used in the verification experiments and relative concentration in the heavy peptide mixture (HPM). Table S3. LC-MS/MS PRM method for the acquisition of 163 samples. Table S4. Peptides used as normalization factors
DOI: 10.6084/m9.figshare.26643058.v1
title: Additional file 2 of Development of a predictive model to distinguish prostate cancer from benign prostatic hyperplasia by integrating serum glycoproteomics and clinical variables

description: Additional file 2: Table S1. List of heavy peptides assayed by PRM with relative retention times (RT) and solubilization conditions. Table S2. List of heavy peptides used in the verification experiments and relative concentration in the heavy peptide mixture (HPM). Table S3. LC-MS/MS PRM method for the acquisition of 163 samples. Table S4. Peptides used as normalization factors
DOI: 10.6084/m9.figshare.26643061
title: Additional file 3 of Development of a predictive model to distinguish prostate cancer from benign prostatic hyperplasia by integrating serum glycoproteomics and clinical variables

description: Additional file 3: Table S5. Sum of all XIC values for the 30 reference glycopeptides used as normalization factors in all replicates.
DOI: 10.6084/m9.figshare.26643061.v1
title: Additional file 3 of Development of a predictive model to distinguish prostate cancer from benign prostatic hyperplasia by integrating serum glycoproteomics and clinical variables

description: Additional file 3: Table S5. Sum of all XIC values for the 30 reference glycopeptides used as normalization factors in all replicates.
DOI: 10.6084/m9.figshare.26643064
title: Additional file 4 of Development of a predictive model to distinguish prostate cancer from benign prostatic hyperplasia by integrating serum glycoproteomics and clinical variables

description: Additional file 4: Peptide intensities (Table S6) and clinical parameters (Table S7) acquired for the samples in the data set.
DOI: 10.6084/m9.figshare.26643064.v1
title: Additional file 4 of Development of a predictive model to distinguish prostate cancer from benign prostatic hyperplasia by integrating serum glycoproteomics and clinical variables

description: Additional file 4: Peptide intensities (Table S6) and clinical parameters (Table S7) acquired for the samples in the data set.
DOI: 10.6084/m9.figshare.26643067
title: Additional file 5 of Development of a predictive model to distinguish prostate cancer from benign prostatic hyperplasia by integrating serum glycoproteomics and clinical variables

description: Additional file 5: Peptide identification and quantification in discovery experiments TMT-A and TMT-B. PCa sample pools have been labelled with isobaric labels 126-128, whereas BPH sample pools were labelled with isobaric labels 129-131.
DOI: 10.6084/m9.figshare.26643067.v1
title: Additional file 5 of Development of a predictive model to distinguish prostate cancer from benign prostatic hyperplasia by integrating serum glycoproteomics and clinical variables

description: Additional file 5: Peptide identification and quantification in discovery experiments TMT-A and TMT-B. PCa sample pools have been labelled with isobaric labels 126-128, whereas BPH sample pools were labelled with isobaric labels 129-131.
DOI: 10.6084/m9.figshare.26643070
title: Additional file 6 of Development of a predictive model to distinguish prostate cancer from benign prostatic hyperplasia by integrating serum glycoproteomics and clinical variables

description: Additional file 6: Confusion matrixes, confidence intervals and ROC curves for the remaining four ML algorithms (KNN, SVM, Logistic regression, Decision Tree). The following sets of variables were considered: (i) proteomic + clinical (named “Multivariate Analysis”, blue), (ii) proteomic variables only (named “Peptides Analysis”, green), (iii) clinical variables only (named “Biological Samples”, red), (iv) PSA only (named “Univariate Analysis”, red).
DOI: 10.6084/m9.figshare.26643070.v1
title: Additional file 6 of Development of a predictive model to distinguish prostate cancer from benign prostatic hyperplasia by integrating serum glycoproteomics and clinical variables

description: Additional file 6: Confusion matrixes, confidence intervals and ROC curves for the remaining four ML algorithms (KNN, SVM, Logistic regression, Decision Tree). The following sets of variables were considered: (i) proteomic + clinical (named “Multivariate Analysis”, blue), (ii) proteomic variables only (named “Peptides Analysis”, green), (iii) clinical variables only (named “Biological Samples”, red), (iv) PSA only (named “Univariate Analysis”, red).
DOI: 10.6084/m9.figshare.26643085.v1
title: Additional file 2 of The La-related protein PsLARP4_5 is crucial for zoospore production and pathogenicity in Phytophthora sojae

description: Additional file 2: Table S1. List of all genes identified in the parental wild-type isolate and a PsLARP4_5 deletion mutant in P. sojae. Table S2. Accession numbers of the LARP sequences of different organisms. Table S3. Primers used in this study.
DOI: 10.6084/m9.figshare.26643085
title: Additional file 2 of The La-related protein PsLARP4_5 is crucial for zoospore production and pathogenicity in Phytophthora sojae

description: Additional file 2: Table S1. List of all genes identified in the parental wild-type isolate and a PsLARP4_5 deletion mutant in P. sojae. Table S2. Accession numbers of the LARP sequences of different organisms. Table S3. Primers used in this study.
DOI: 10.6084/m9.figshare.26643088
title: Additional file 1 of Maternal hypercholesterolemia would increase the incidence of embryo aneuploidy in couples with recurrent implantation failure

description: Additional file 1: Table S1. Population information.
DOI: 10.6084/m9.figshare.26643088.v1
title: Additional file 1 of Maternal hypercholesterolemia would increase the incidence of embryo aneuploidy in couples with recurrent implantation failure

description: Additional file 1: Table S1. Population information.
DOI: 10.6084/m9.figshare.26643121
title: Additional file 2 of The identification, characterization, and management of Rotylenchulus reniformis on Cucumis melo in China

description: Additional file 2: Table S1. Effects of four treatments on growth parameters of C. melo infected with the R. reniformis in the greenhouse in Jimo (Qingdao, China) in 2021 and 2022. Table S2. The relative abundance of bacteria in the rhizosphere soil of C. melo at the genus level under different treatments. Each treatment included three replicates (S: soil solarization; SC: combination of soil solarization and chitooligosaccharide copper; BC: blank control). Table S3. The relative abundance of fungi in the rhizosphere soil of C. melo at the genus level under different treatments. Each treatment included three replicates (S: soil solarization; SC: combination of soil solarization and chitooligosaccharide copper; BC: blank control). Table S4. Primer sets used in the present study.
DOI: 10.6084/m9.figshare.26643121.v1
title: Additional file 2 of The identification, characterization, and management of Rotylenchulus reniformis on Cucumis melo in China

description: Additional file 2: Table S1. Effects of four treatments on growth parameters of C. melo infected with the R. reniformis in the greenhouse in Jimo (Qingdao, China) in 2021 and 2022. Table S2. The relative abundance of bacteria in the rhizosphere soil of C. melo at the genus level under different treatments. Each treatment included three replicates (S: soil solarization; SC: combination of soil solarization and chitooligosaccharide copper; BC: blank control). Table S3. The relative abundance of fungi in the rhizosphere soil of C. melo at the genus level under different treatments. Each treatment included three replicates (S: soil solarization; SC: combination of soil solarization and chitooligosaccharide copper; BC: blank control). Table S4. Primer sets used in the present study.
DOI: 10.6084/m9.figshare.26643124
title: Additional file 1 of Identification of plasmids in avian-associated Escherichia coli using nanopore and illumina sequencing

description: Additional file 1: Table S2. Detailed MOBsuite data from 19 poultry-associated E. coli strains from Saskatchewan.
DOI: 10.6084/m9.figshare.26643124.v1
title: Additional file 1 of Identification of plasmids in avian-associated Escherichia coli using nanopore and illumina sequencing

description: Additional file 1: Table S2. Detailed MOBsuite data from 19 poultry-associated E. coli strains from Saskatchewan.