cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.08c2k/3
title: Werner_Kiers_2014

description: This R-script performs all the analyses reported in Werner et al. 2014 and generates the figures (with the exception of Figure 1). Very minor adaptations to the figures were made manually in Adobe Illustrator (move position of the legends, change colours etc.).
DOI: 10.5061/dryad.0kh88/1
title: Model realizations

description: A comma-separated value file with all model realization data
DOI: 10.5061/dryad.2d504/1
title: Compensatory mitigation stream restoration monitoring data

description: Habitat scores, biological indices, and water quality monitoring data for constructed mitigation projects compensating for mining impacts in Appalachian coal region. Data were derived from mitigation monitoring reports submitted to the Army Corps of Engineers for approval. Mitigation projects include stream creation, stream restoration, and stream enhancement.
DOI: 10.5061/dryad.2d504/2
title: Mitigation locations

description: Locations of mitigation sites used in analysis.
DOI: 10.5061/dryad.895b2/1
title: Keiser and Pruitt - Composition and size ESM

description: The data associated with collective behavior assays. Three response variables (latency to emerge from the colony retreat, latency to attack the prey stimulus, number of attackers) in response to two independent variables: colony personality composition and colony size.
DOI: 10.5061/dryad.k282c/5
title: Prochlorococcus genomes and cluster of orthologous groups of proteins (COGs)

description: Cluster assignments and annotation metadata for genes in the newly sequenced Prochlorococcus genomes described in this work, as well as in previously published genomes.
DOI: 10.5061/dryad.m3351/1
title: CO1 data

description: Genetic data used in the analyses
DOI: 10.5061/dryad.m3351/2
title: Ecological and Museum data

description: Museum data for M.l.lugubris and ecological data (abundance and habitat).
DOI: 10.5061/dryad.mv34v/1
title: Gene-FileHeader-Genotype-Phenotype Reference List

description: Master reference file to link Gene to Files and Noted Phenotypes.
DOI: 10.5061/dryad.mv34v/2
title: HEpart1Num-A-D

description: Package contains HE images of genes from A-D and numerical names
DOI: 10.5061/dryad.mv34v/3
title: HEpart3O-S

description: Package contains HE images of genes from O-S
DOI: 10.5061/dryad.mv34v/4
title: HEpart4T-Z-incWTs

description: Package contains HE images of genes from T-Z including Wildtype animals
DOI: 10.5061/dryad.mv34v/6
title: HEpart2E-N

description: Package contains HE images of genes from E-N
DOI: 10.5061/dryad.nh437/10
title: OLFP amplitude and latency vs frequency

description: The .zip file contains the values of the OLFP amplitude and latency for different photostimulation frequencies in 7 mice (see the paper for a detailed description of the protocol). The files ending with "_Freq" contain the list of frequencies (in Hz). The files ending with "_Peak_vs_Freq" contain the values of the OLFP amplitude (in Volts). The files ending with "_Lat_vs_Freq" contain the values of the OLFP latency (in seconds). These data were used in Fig. 2J.
DOI: 10.5061/dryad.nh437/11
title: OLFP recovery

description: The .zip file contains the values for the OLFP amplitude recovery experiment (Fig. 2K; see the paper and the supporting information for a detailed description of the protocol). The files ending with "_stim_Y" contain the normalized OLFP amplitude values in the stimulation period (in blue on Fig. 2K). The files ending with "_recov_Y" contain the normalized OLFP amplitude values in the recovery period (in green on Fig. 2K). The file "Stim_X.txt" contains the time points for the stimulation period. The file "Recov_X.txt" contains the time points for the recovery period.
DOI: 10.5061/dryad.nh437/12
title: Von Frey experiment

description: This .csv file contains the scored data for the Von Frey experiment (Fig. 3). See the paper and supporting information for a detailed description of the experiment. A description of the data contained in the .csv is available in the README.txt file.
DOI: 10.5061/dryad.nh437/9
title: Fits OLFP amplitude and latency vs power

description: This file contains the fit parameters of the OLFP amplitude vs power and OLFP latency vs power curves for 9 mice. See README.txt for a detailed description of the fit parameters.
DOI: 10.5061/dryad.ps515/1
title: Gene expression data of inbred and outbred zebra finches

description: Microarray expression signal intensity (log2 signal intensity) at 10695 genes in male and female, inbred and outbred (control), zebra finches (in total 40 individuals). RNA was extracted from full telencephalon of 10 days old birds. Gene location is given as autosomal or sex-linked.
DOI: 10.5061/dryad.qb6h8/2
title: Lag Method 2 Increment Based Lag

description: R code for Lag Method 2 described in paper.
DOI: 10.5061/dryad.r1f52/1
title: Henning et al Mol Ecol Phenotypes

description: Phenotypes of the 171 F2 individuals: "0" and "1" indicate absence and presence of horizontal stripes, respectively.
DOI: 10.7925/drs1.ucdlib_31180
title: 1 Chatham Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground.
description: Dublin City Council, Record of Protected Structures (2010), no. 1466
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31182
title: Balfe Street 5

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Blockwork structure, 3 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31186
title: 5 Chatham Street, Dublin 2, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31188
title: 8-9 Balfe Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31192
title: 8 Chatham Street, Dublin 2, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31194
title: 2 Burgh Quay, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Blockwork structure, 4 levels above ground.
description: Dublin City Council, Record of Protected Structures (2010), no. 1015
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.5061/dryad.158pj/1
title: ESM Data 1

description: Data for analyses of length of copulatory wheels
DOI: 10.5061/dryad.2b5f7/1
title: Blood_tracer_kinetics_in_the_arterial_tree
DOI: 10.5061/dryad.2s6f9/1
title: gradientForests: Table of environmental / spatial predictors and minor allele frequencies

description: Data used to fit gradient forest models for reference and candidate SNPs from 31 balsam poplar populations.
DOI: 10.5061/dryad.2s6f9/2
title: GDM: Table of Fst distances and geographic / environmental data

description: Data used to fit generalized dissimilarity models for reference and candidate SNPs from 31 balsam poplar populations. Tables is in GDM site-pair format, with Fst distances for each SNP dataset.
DOI: 10.5061/dryad.3q08v/1
title: Supplementary Material-S1

description: Citations to data sources.  Two tables include the extracted data for each variable from each study included for control (unharvested) and clear-cut treatments.  Data for replicated studies (2 or more replicates in each category) include Means, Standard Errors, and the calculated effect sizes.  The data for unreplicated studies (1 in each category, or 2 in one category and 1 in the other) are in a separate table, along with the values and calculated effect size.
DOI: 10.5061/dryad.54p64/1
title: Dataset of seed infestation rates sampled on 32 sites from 1977 to 2010.

description: These data were entirely used for the descriptive analysis and partially used for parameter estimation. We indicated the year and the site of record, the number of cones sampled, the total number of seeds in cones, the number of parasitized seeds in cones, the global seed infestation rate, the total number of M. pinsapinis emerged, the total number of M. schimitscheki emerged, the contribution of M. pinsapinis and M. schimitscheki to the global SIR. The total number of adults emerged was observed from 1999 to 2007 and was estimated from diapause pattern for cohorts from 2008 to 2010.
DOI: 10.5061/dryad.54p64/2
title: Cone production index estimated on 27 sites from 2006 to 2012

description: Cone production index estimated on 27 sites from 2006 to 2012 and used for parameter estimation. The 11 sites used for the fructification model appear in bold. Note that Saint-André is the only site used for the fructification model but not for parameter estimation.
DOI: 10.5061/dryad.6s713/1
title: Green and Jutfelt 2014 raw data

description: This file contains the complete dataset for the results in Green and Jutfelt 2014 "Elevated carbon dioxide alters the plasma composition and behaviour of a shark".
DOI: 10.5061/dryad.7v8fq/1
title: Appendix S1 Tipulidae VNDM

description: Georeferenced species distribution database containing the distributional records of over 4,000 Tipulidae species. It can be directly opened for analysis in the computer program VNDM.
DOI: 10.5061/dryad.7v8fq/2
title: Appendix S2 Comparative Chart

description: Comparison of the results of the analyses in VNDM saving sets of areas with scores above 8 and 1.
DOI: 10.5061/dryad.90kt3/1
title: Proc B dryad files

description: Excel, R-script and video files
DOI: 10.5061/dryad.gf637/1
title: PCC_genotype_Sheet

description: Table entitled “PCC_genotype_Sheet.xls presents the Genotypic data of the 1033 individuals sampled in the course of the study. Individual code= unique number for each individual. Stage= sex and stage of the sampled individual. Population= population where the individual was collected. Colony number at each population=unique number of each colony at each population. Region= region where the individual was collected. Country= country where the individual was collected. Pc01= individual genotype for locus Pc01 (3 digit allele/3 digit allele, blank represents missing genotypes). Pc02= individual genotype for locus Pc02 (3 digit allele/3 digit allele, blank represents missing genotypes). Pc14= individual genotype for locus Pc014 (3 digit allele/3 digit allele, blank represents missing genotypes). Pc41= individual genotype for locus Pc41 (3 digit allele/3 digit allele, blank represents missing genotypes). Pc62= individual genotype for locus Pc62 (3 digit allele/3 digit allele, blank represents missing genotypes). Pc68= individual genotype for locus Pc68 (3 digit allele/3 digit allele, blank represents missing genotypes). Pc85= individual genotype for locus Pc85 (3 digit allele/3 digit allele, blank represents missing genotypes). Pc27= individual genotype for locus Pc27 (3 digit allele/3 digit allele, blank represents missing genotypes). Pc83= individual genotype for locus Pc83 (3 or 2 digit allele/3 or 2 digit allele, blank represents missing genotypes). Pc65= individual genotype for locus Pc65 (3 or 2 digit allele/3 or 2 digit allele, blank represents missing genotypes). COI haplotype= individual haplotype for COI sequence (ND represents missing haplotypes).
DOI: 10.5061/dryad.gf637/2
title: Population_GPS_Density

description: Table entitled “Population_GPS_Density.xls in the first sheet titled “GPS” presents the latitude and longitude data of 55 populations in two countries in the course of the study. Population= unique name for each population within each region within each country. Region= unique name for each region within each country. County= unique name for each country. latitude1= sexagesimal scale of latitude for each population. longitude1= sexagesimal scale of longitude for each population. latitude2= ordinal scale latitude for each population. longitude2= ordinal scale of longitude for each population. In the second sheet titled “Density” presents the colony density per location within each population in the course of the study. Location= unique name for each location within each population within each country. Population= unique name for each population for each country. Country= unique name for each country. No. of colonies= number of colonies per each location. Area (Km2)= area in Km2 in each location. Density= no. of colonies per area in each location.
DOI: 10.5061/dryad.gf637/3
title: sequence_COI_Pcc

description: Sequence data for all haplotypes of COI
DOI: 10.5061/dryad.h23d1/1
title: Collected data from the origial CALVLOC study

description: An Excel file containing the original data of CALVLOC study (Hypertens Res. 2009;32:895-900), from which we perfomed the present subanalysis.Abbreviations used in the colums headings; BP, blood pressure; HR, heart rate; LVDd/LVDs, end-diastolic and end-systoic LV diameters; IVSth, intraventricular septum thickness; PWth, posterior wall thickness; RWT, relative wall thickness.
DOI: 10.5061/dryad.hf93m/1
title: AVC1 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.k282c/10
title: All predicted Prochlorococcus ORFs, amino acid sequence

description: Set of protein FASTA files containing the predicted amino acid translation for all ORFs in each genome. This file includes ORFs from both the new genomes presented here as well as the re-annotation of previously released Prochlorococcus genomes.
DOI: 10.5061/dryad.k282c/6
title: Detailed annotation information for Prochlorococcus genomes

description: Set of tables providing detailed annotation information for each newly sequenced Prochlorococcus genome, as well as re-annotations of previously published genomes.
DOI: 10.5061/dryad.k282c/7
title: Prochlorococcus genome sequences

description: Set of nucleotide FASTA-formatted files containing the new Prochlorococcus genome assemblies described in this work.
DOI: 10.5061/dryad.k282c/8
title: Complete set of initial contig assemblies from non-axenic Prochlorococcus cultures

description: Set of nucleotide FASTA files containing all assembled contigs (&gt;500 bp) from each culture (i.e. both Prochlorococcus and heterotrophs) sequenced in this work. Each file contains the set of contigs assembled from the raw sequencing data, before any filtering to separate Prochlorococcus from heterotroph contigs.
DOI: 10.5061/dryad.k282c/9
title: All predicted Prochlorococcus ORFs, nucleotide sequence

description: Set of nucleotide FASTA files containing the predicted nucleotide sequence for all open reading frames (ORFs) in each genome. This file includes ORFs from both the new genomes presented here as well as the re-annotation of previously released Prochlorococcus genomes.
DOI: 10.5061/dryad.m06t1/1
title: Supplementary File 1

description: SSRs identified in each of the positively selected sites in the 14 taxa from our previous study.
DOI: 10.5061/dryad.r1f52/2
title: Henning et al Mol Ecol genotypes

description: Genotypes of 183 individuals (2 parents, 10 F1s and 171 F2s) in JoinMap format. 1517 markers, as exported by the "genotypes" module of the program Stacks, are reported.
DOI: 10.5061/dryad.r1f52/3
title: Henning et al Mol Ecol Linkage Map

description: Linkage map including the final set of 867 markers obtained after the quality-filtering steps described in the manuscript.
DOI: 10.7925/drs1.ucdlib_31198
title: 14b Chatham Street, Dublin 2, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31200
title: 4-5 Burgh Quay, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31204
title: 3-4 Church Lane, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1908.
description: Dublin City Council, Record of Protected Structures (2010), no. 1542
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31206
title: Burgh Quay 7

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 5 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31210
title: 34-36 Clarendon Street, Dublin 2, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.5061/dryad.0039d/1
title: Data By Male

description: This is the main data file used in the paper. It is described in detail in the associated 'readme' file.
DOI: 10.5061/dryad.158pj/2
title: ESM Data 2

description: Data file for analyses of fighting rates
DOI: 10.5061/dryad.158pj/3
title: ESM Data 3

description: Data set for analyses of mating rate
DOI: 10.5061/dryad.158pj/4
title: ESM Data 4

description: Data for survival analyses
DOI: 10.5061/dryad.158pj/5
title: ESM Data 5

description: Data for analyses of female remating
DOI: 10.5061/dryad.2s6f9/3
title: R scripts for modeling and mapping genomic variation

description: R scripts to use gradient forest and generalized dissimilarity modeling to model and map genomic variation under current and future climate.
DOI: 10.5061/dryad.3k019/1
title: data1

description: Data file contains the main dataset used for analyses