cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.aq46hf
title: Occurrence Download

description: A dataset containing 31575 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-76.00342 -15.29297,-70.72998 -18.41309,-69.86206 -18.56689,-68.71948 -16.50146,-68.53271 -12.34863,-70.8728 -9.03076,-72.30103 -9.646,-73.54248 -7.51465,-72.09229 -5.00977,-70.51025 -4.39453,-69.20491 -4.59253,-69.38965 -2.46094,-74.83887 0.35156,-81.79321 -3.69141,-81.30981 -6.41602,-80.13428 -6.85547,-77.27783 -12.30469,-76.00342 -15.29297))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Asteraceae"
 ]
}

 The dataset includes 31575 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072010-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r5938y
title: Occurrence Download

description: A dataset containing 2853 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Geomys breviceps Baird, 1855"
 ]
}

 The dataset includes 2853 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0221338-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pvd62k
title: Occurrence Download

description: A dataset containing 339 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Allium sikkimense Baker",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 339 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0321732-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kz2h76
title: Occurrence Download

description: A dataset containing 1785 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is Asia",
 "Country is Philippines",
 "PublishingOrg is 6ea87510-0561-11d8-b851-b8a03c50a862",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 1785 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0302925-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6wrpq5
title: Occurrence Download

description: A dataset containing 2228 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aythya americana (Eyton, 1838)",
 "Year 2011-2018"
 ]
}

 The dataset includes 2228 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239909-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jux3uk
title: Occurrence Download

description: A dataset containing 110 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liolaemus gravenhorstii (Gray, 1845)"
 ]
}

 The dataset includes 110 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008559-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqqktb
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Allium nanodes Airy Shaw",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 38 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0321728-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mjkpnn
title: Occurrence Download

description: A dataset containing 10212 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is PRECIS",
 "Geometry POLYGON((25.07665 -31.35349,27.75651 -31.35349,27.75651 -29.53476,25.07665 -29.53476,25.07665 -31.35349))",
 "HasGeospatialIssue is false",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 10212 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0294735-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ry8f5
title: Occurrence Download

description: A dataset containing 512 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Andrena auricoma Smith, 1879"
 ]
}

 The dataset includes 512 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230773-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8jpboe
title: Occurrence Download

description: A dataset containing 3017 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nestor notabilis Gould, 1856"
 ]
}

 The dataset includes 3017 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008559-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xmytv6
title: Occurrence Download

description: A dataset containing 24393 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nicotiana glauca Graham"
 ]
}

 The dataset includes 24393 records from 402 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0287471-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.6957944.v1
title: Additional file 1: of E90 subunit vaccine protects mice from Zika virus infection and microcephaly

description: Supplemental experimental materials. (XLSX 10 kb)
DOI: 10.25387/g3.12724955.v1
title: Supplemental Material for Liu et al., 2020 (post accept)

description: Figure
S1 shows the sequence of the synthetized tdTomato gene with flanking homologies
to SIR2. Figure S2 illustrates the growth of clones with subtelomeric URA3
either on –ura plates or on 5-FOA plates. Figure S3 and S4 describe the
recovery of the initial expression profile after cell sorting for both low and
high Sir2-expressing cells, after 6 h and 24 h respectively. Figure S5 shows
the viability of subpopulations of the tdTomato-Tsl1-tagged strain expressing
extreme tdTomato levels similar than in the tdTomato-Sir2-tagged strain. Table
S1 lists the primers used in this study. Table S2 contains the raw data of the
silencing and viability analyses
DOI: 10.6084/m9.figshare.6958019.v1
title: Additional file 3: of Comparative proteomic analysis of QTL CTS-12 derived from wild rice (Oryza rufipogon Griff.), in the regulation of cold acclimation and de-acclimation of rice (Oryza sativa L.) in response to severe chilling stress

description: The list of proteins detected using iTRAQ labeling LC-MS/MS. (XLSX 2619Â kb)
DOI: 10.6084/m9.figshare.6958025.v1
title: Additional file 4: of Comparative proteomic analysis of QTL CTS-12 derived from wild rice (Oryza rufipogon Griff.), in the regulation of cold acclimation and de-acclimation of rice (Oryza sativa L.) in response to severe chilling stress

description: Relative fold changes of differentially expressed proteins identified in this study. (XLSX 2862Â kb)
DOI: 10.6084/m9.figshare.14822403.v1
title: Metadata record for the article: Phase 1b clinical trial of ado-trastuzumab emtansine and ribociclib for HER2-positive metastatic breast cancer

description: <b>Summary</b><br>

This
metadata record provides details of the data supporting the claims of the
related article: “Phase 1b clinical trial of
ado-trastuzumab emtansine and ribociclib for HER2-positive metastatic breast
cancer”.

The
related study reports the results of an open-label, phase Ib clinical trial
designed to assess the safety, tolerability, and activity of ribociclib in
combination with T-DM1 among women with metastatic or locally advanced HER2+
breast cancer.

 

Type of data:
clinical data; pharmacokinetic (PK) data

Subject of
data: <i>Homo sapiens</i>

Sample size:
12

Population
characteristics: one cohort of ribociclib in combination with T-DM1 (cohort A—2
other cohorts from the same trial are reported elsewhere); Pre- and
post-menopausal women aged 18 years or older with histologically confirmed
unresectable, locally advanced, or metastatic HER2+ breast cancer and measurable
or non-measurable disease according to Response Evaluation Criteria in Solid
Tumor (RECIST) 1.1

Trial
registration number: NCT02657343

 

<b>Data
access</b>

All data are
stored in the following files: Excel files ‘Figure 1’, ‘Figure 2’, ‘Figure 3’,
‘Table 1’, ‘Table 2’; Word file: ‘Supplement TDM1 Ribo Manuscript_revision.docx’.
The Excel files are housed on institutional file storage and are not publicly
available in order to protect patient privacy as informed consent to share
participant-level data was not obtained prior to or during data collection.
However, the data can be made available upon request to the corresponding
author. The Word file is shared publicly via this data record, and is also
available in PDF format as part of the supplementary materials of the related
article.

 

<b>Corresponding author(s) for this study</b>

Aditya
Bardia MD, MPH, Attending Physician, Massachusetts General Hospital Cancer
Center, Harvard Medical School, Bartlett Hall, 15 Parkman St., Boston, MA 02114.
Office: (617) 643 2208; Fax: (617) 643 0589. Email:
Bardia.Aditya@mgh.harvard.edu<br>
<br>
<b></b>

<b>Study
approval </b>

The
study received institutional review board (IRB) approval from the
Dana-Farber/Harvard Cancer Center Human Research Committee.
DOI: 10.6084/m9.figshare.6957905.v1
title: Additional file 1: of Homeobox oncogene activation by pan-cancer DNA hypermethylation

description: Table S1. Data resource of WGBS, RNA-seq, and Infinium HumanMethylation 450 BeadChip data. (XLS 720 kb)
DOI: 10.6084/m9.figshare.6957944
title: Additional file 1: of E90 subunit vaccine protects mice from Zika virus infection and microcephaly

description: Supplemental experimental materials. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6957908
title: Additional file 2: of Homeobox oncogene activation by pan-cancer DNA hypermethylation

description: Table S2. Human reference UMRs and annotation. (XLS 8950 kb)
DOI: 10.6084/m9.figshare.6957935
title: Additional file 5: of Homeobox oncogene activation by pan-cancer DNA hypermethylation

description: Table S4. GO functional annotation of pan-cancer hypermethylated, hypomethylated, and conserved Canyon/cUMRs genes. (XLS 698 kb)
DOI: 10.6084/m9.figshare.12725298
title: Electromagnetic parameters from C,N-codoped MoSi<sub>2</sub> ceramic with excellent heat resistance for microwaves absorption application

description: The raw data of electromagnetic parameters
DOI: 10.6084/m9.figshare.6957911
title: Additional file 1: of Renal hypouricemia caused by novel compound heterozygous mutations in the SLC22A12 gene: a case report with literature review

description: The putative genetic mutations in WES analysis. According to an assumed inheritance of autosomal recessive mode for this disease, we first analyzed the putative genetic mutations homozygous in the patient and heterozygous in both parents. After filtering, 29 variants were retained (see Sheet 1). We also analyzed the putative causal mutations present in the patient but not present in her parents. After filtering, a total of 521 suspicious mutations were screened out (see Sheet 2). (XLSX 298Â kb)
DOI: 10.6084/m9.figshare.6957983.v1
title: Additional file 10: of Comparative proteomic analysis of QTL CTS-12 derived from wild rice (Oryza rufipogon Griff.), in the regulation of cold acclimation and de-acclimation of rice (Oryza sativa L.) in response to severe chilling stress

description: The DEPs common to 9311 and DC90 in response to chilling stress and recovery treatment by comparison with untreated controls (XLSX 41Â kb)
DOI: 10.6084/m9.figshare.6957935.v1
title: Additional file 5: of Homeobox oncogene activation by pan-cancer DNA hypermethylation

description: Table S4. GO functional annotation of pan-cancer hypermethylated, hypomethylated, and conserved Canyon/cUMRs genes. (XLS 698 kb)
DOI: 10.6084/m9.figshare.6958019
title: Additional file 3: of Comparative proteomic analysis of QTL CTS-12 derived from wild rice (Oryza rufipogon Griff.), in the regulation of cold acclimation and de-acclimation of rice (Oryza sativa L.) in response to severe chilling stress

description: The list of proteins detected using iTRAQ labeling LC-MS/MS. (XLSX 2619Â kb)
DOI: 10.6084/m9.figshare.6957911.v1
title: Additional file 1: of Renal hypouricemia caused by novel compound heterozygous mutations in the SLC22A12 gene: a case report with literature review

description: The putative genetic mutations in WES analysis. According to an assumed inheritance of autosomal recessive mode for this disease, we first analyzed the putative genetic mutations homozygous in the patient and heterozygous in both parents. After filtering, 29 variants were retained (see Sheet 1). We also analyzed the putative causal mutations present in the patient but not present in her parents. After filtering, a total of 521 suspicious mutations were screened out (see Sheet 2). (XLSX 298Â kb)
DOI: 10.6084/m9.figshare.6957917
title: Additional file 3: of Homeobox oncogene activation by pan-cancer DNA hypermethylation

description: Table S3. Pan-cancer differentially methylated UMRs across 7 tumor types. (XLS 15579 kb)
DOI: 10.6084/m9.figshare.6957908.v1
title: Additional file 2: of Homeobox oncogene activation by pan-cancer DNA hypermethylation

description: Table S2. Human reference UMRs and annotation. (XLS 8950 kb)
DOI: 10.6084/m9.figshare.12197433
title: Additional file 1 of Changes in carbohydrate metabolism and endogenous hormone regulation during bulblet initiation and development in Lycoris radiata

description: Additional file 1: Table S1. Mapping results of RNA-seq reads.
DOI: 10.6084/m9.figshare.6957917.v1
title: Additional file 3: of Homeobox oncogene activation by pan-cancer DNA hypermethylation

description: Table S3. Pan-cancer differentially methylated UMRs across 7 tumor types. (XLS 15579 kb)
DOI: 10.6084/m9.figshare.6958043
title: Additional file 7: of Comparative proteomic analysis of QTL CTS-12 derived from wild rice (Oryza rufipogon Griff.), in the regulation of cold acclimation and de-acclimation of rice (Oryza sativa L.) in response to severe chilling stress

description: The primer sequences of corresponding DEPs-encoding genes and GAPDH using for qPCR. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.12197433.v1
title: Additional file 1 of Changes in carbohydrate metabolism and endogenous hormone regulation during bulblet initiation and development in Lycoris radiata

description: Additional file 1: Table S1. Mapping results of RNA-seq reads.
DOI: 10.6084/m9.figshare.12197439.v1
title: Additional file 2 of Changes in carbohydrate metabolism and endogenous hormone regulation during bulblet initiation and development in Lycoris radiata

description: Additional file 2: Table S2. The quality of assembled unigenes.
DOI: 10.6084/m9.figshare.7482263
title: Involvement of adenosine A1 receptor in electroacupuncture-mediated inhibition of astrocyte activation during neuropathic pain

description: ABSTRACT Neuropathic pain is a chronic pain condition caused by damage or dysfunction of the central or peripheral nervous system. Electroacupuncture (EA) has an antinociceptive effect on neuropathic pain, which is partially due to inhibiting astrocyte activation in the spinal cord. We found that an intrathecal injection of 8-cyclopentyl-1,3-dipropylxanthine (DPCPX), a selective adenosine A1 receptor antagonist, reversed the antinociceptive effects of EA in a chronic constriction injury-induced neuropathic pain model. The expression of GFAP in L4-L6 spinal cord was significantly upgraded, while DPCPX suppressed the effect of the EA-mediating inhibition of astrocyte activation, as well as wiping out the EA-induced suppression of cytokine content (TNF-α). These results indicated that the adenosine A1 receptor is involved in EA actions during neuropathic pain through suppressing astrocyte activation as well as TNF-α upregulation of EA, giving enlightenment to the mechanisms of acupuncture analgesia and development of therapeutic targets for neuropathic pain.
DOI: 10.6084/m9.figshare.12197466
title: Additional file 7 of Changes in carbohydrate metabolism and endogenous hormone regulation during bulblet initiation and development in Lycoris radiata

description: Additional file 7: Table S5. Primers used in qRT-PCR.
DOI: 10.6084/m9.figshare.20064874.v1
title: Additional file 2 of Mendelian randomization analysis of 37 clinical factors and coronary artery disease in East Asian and European populations

description: Additional file 2: Table S5. Pairwise genetic correlation between the 37 selected clinical factors and CAD in East Asian and European populations.
DOI: 10.6084/m9.figshare.7488830
title: The dataset of the manuscript Fully convolutional network for rice seedling and weed image segmentation at the seedling stage in paddy fields

description: The folder 'rice_seedling_and_weed_dataset' containing Ground Truth images and RGB images. All the image were in the folder: 'rice_seedling_and_weed_dataset\image': image_1.jpg, image_2.jpg ...... All the Ground Truth image were in the folder: 'rice_seedling_and_weed_dataset\PixelLabelData': Label_1.png, Label_2.png ......The file of 'gTruth.mat' can associate Ground Truth images with RGB images. The file of 'imageLabelingSession.mat'was configuration information of labeled data.The file directory must be 'D:\rice seedling and weed dataset'.<br>
DOI: 10.6084/m9.figshare.17450303
title: Methylation of immune-related genes in peripheral blood leukocytes and breast cancer

description: Abnormal
DNA methylation contributes to breast cancer (BC). Immune-related
genes play crucial roles in the BC development and progression. A case–control study was conducted using
MethylTarget sequencing to explore the relationship between the methylation
levels of <i>PSMC1</i>, <i>SPPL3</i>, <i>CARD11</i>, <i>PSMB8</i> and <i>NCF2</i> and BC risk.
DOI: 10.6084/m9.figshare.23742066
title: SNP data for <em>Pterocarya macroptera</em>

description: Total_no_filter.vcf:
Unfiltered SNP data for all samples of <em>Pterocarya macroptera</em> across in China, produced by Stacks.
Total_Filter.vcf:
SNP data was filtered: (1) markers with an observed heterozygosity &gt; 0.70 among individuals were removed to reduce the potential occurrence of paralogs, (2) minor allele frequency (MAF) &lt; 0.05, (3) only the first SNP locus of each read was retained by parameter write_single_snp to reduce physical linkage, and (4) a minimum of 70% of individuals within a population were required to process a locus. 
<br>
DOI: 10.6084/m9.figshare.16402038
title: Transposable element insertions in Brassica rapa genomes

description: TE insertions in 524 <i>Brassica rapa</i> genomes.
DOI: 10.24403/jp.1329178
title: Düll, R. & Meinunger, L.: Deutschlands Moose : Die Verbreitung der deutschen Moose in der BR Deutschland und in der DDR, ihre Höhenverbreitung, ihre Arealtypen, sowie Angaben zum Rückgang der Arten. - 1. Teil: Anthocerotae, Marchantiatae, Bryatae: Sphagnidae, Andreaeidae, Bryidae: Tetraphidales-Pottiales. - Bad Münstereifel-Ohlerath : IDH-Verlag, 1989 / [rezensiert von] H.-J. Zündorf
DOI: 10.15129/f90efafe-e6bd-4850-a57c-87572476b081
title: Data for 'IL-17C plays a role in the pathophysiology of acute recurrent tonsillitis'

description: Data for the paper entitled: IL-17C plays a role in the pathophysiology of acute recurrent tonsillitis.
Two Prism files which contain the raw data from analysis of both western blots and segmentation based image analysis. Statistical tests also presented within these files.
DOI: 10.6084/m9.figshare.9586787
title: Targeted sequencing reveals expanded genetic diversity of human transfer RNAs

description: Transfer RNAs are required to translate genetic information into proteins as well as regulate other cellular processes. Nucleotide changes in tRNAs can result in loss or gain of function that impact the composition and fidelity of the proteome. Despite links between tRNA variation and disease, the importance of cytoplasmic tRNA variation has been overlooked. Using a custom capture panel, we sequenced 605 human tRNA-encoding genes from 84 individuals. We developed a bioinformatic pipeline that allows more accurate tRNA read mapping and identifies multiple polymorphisms occurring within the same variant. Our analysis identified 522 unique tRNA-encoding sequences that differed from the reference genome from 84 individuals. Each individual had ~66 tRNA variants including nine variants found in less than 5% of our sample group. Variants were identified throughout the tRNA structure with 17% predicted to enhance function. Eighteen anticodon mutants were identified including potentially mistranslating tRNAs; e.g., a tRNA<sup>Ser</sup> that decodes Phe codons. Similar engineered tRNA variants were previously shown to inhibit cell growth, increase apoptosis and induce the unfolded protein response in mammalian cell cultures and chick embryos. Our analysis shows that human tRNA variation has been underestimated. We conclude that the large number of tRNA genes provides a buffer enabling the emergence of variants, some of which could contribute to disease.
DOI: 10.6084/m9.figshare.9586787.v1
title: Targeted sequencing reveals expanded genetic diversity of human transfer RNAs

description: Transfer RNAs are required to translate genetic information into proteins as well as regulate other cellular processes. Nucleotide changes in tRNAs can result in loss or gain of function that impact the composition and fidelity of the proteome. Despite links between tRNA variation and disease, the importance of cytoplasmic tRNA variation has been overlooked. Using a custom capture panel, we sequenced 605 human tRNA-encoding genes from 84 individuals. We developed a bioinformatic pipeline that allows more accurate tRNA read mapping and identifies multiple polymorphisms occurring within the same variant. Our analysis identified 522 unique tRNA-encoding sequences that differed from the reference genome from 84 individuals. Each individual had ~66 tRNA variants including nine variants found in less than 5% of our sample group. Variants were identified throughout the tRNA structure with 17% predicted to enhance function. Eighteen anticodon mutants were identified including potentially mistranslating tRNAs; e.g., a tRNA<sup>Ser</sup> that decodes Phe codons. Similar engineered tRNA variants were previously shown to inhibit cell growth, increase apoptosis and induce the unfolded protein response in mammalian cell cultures and chick embryos. Our analysis shows that human tRNA variation has been underestimated. We conclude that the large number of tRNA genes provides a buffer enabling the emergence of variants, some of which could contribute to disease.
DOI: 10.24403/jp.1329215
title: Syrien - Mesopotamien - Iran : Anmerkungen zu Carl Haussknecht’s archäologischen Beobachtungen / Joachim Oelsner
DOI: 10.6084/m9.figshare.12197454
title: Additional file 4 of Changes in carbohydrate metabolism and endogenous hormone regulation during bulblet initiation and development in Lycoris radiata

description: Additional file 4: Table S4. The information of differentially expressed unigenes involved in hormone biosynthesis and signal transduction.