cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7137953.v1
title: Production of recombinant active of protein KLK13

description: Production of recombinant active protein KLK13.
DOI: 10.6084/m9.figshare.7137944
title: Trypsin-like proteolytic activity in size exclusion (SEC) fractionated CVF

description: Trypsin-like proteolytic activity in size exclusion (SEC) fractionated CVF.
DOI: 10.7284/122990
title: Multiplexed data collected during research cruise WS16137 using a Miami VIDS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7137944.v1
title: Trypsin-like proteolytic activity in size exclusion (SEC) fractionated CVF

description: Trypsin-like proteolytic activity in size exclusion (SEC) fractionated CVF.
DOI: 10.6084/m9.figshare.7137938
title: Trypsin-like proteolytic activity in CVF

description: Trypsin-like proteolytic activity in CVF.
DOI: 10.7284/122989
title: Anemometer data collected during research cruise WS16137 using a RM Young 05106 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7137920
title: Ranked relative abundance proteases in CVF

description: The ranked relative abundance of proteases in the CVF proteome.
DOI: 10.6084/m9.figshare.7137938.v1
title: Trypsin-like proteolytic activity in CVF

description: Trypsin-like proteolytic activity in CVF.
DOI: 10.6084/m9.figshare.7137920.v1
title: Ranked relative abundance proteases in CVF

description: The ranked relative abundance of proteases in the CVF proteome.
DOI: 10.7284/122985
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise WS16137 using a Sea-Bird SBE-911+ instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7137899
title: PLOS one Supplementary Data.xlsx

description: This dataset provides the saccade probobability for various epochs following TMS (columns). Individual data are provided on each row.
DOI: 10.7284/122987
title: Fluorometer data collected during research cruise WS16137 using a Turner Cyclops-7 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7137884
title: Hands-on Tutorial Deploying Kubernetes and JupyterHub on Jetstream

description: Jupyter Notebooks have become a mainstream tool for interactive computing in every field of science. Being a web-based platform, they are naturally suited to serve as companion application to Science Gateways: a scientist can use a Jupyter Notebook in their browser to pre-process inputs, launch a job on the Science Gateway via web API and then access, analyze, plot and postprocess the job outputs, without ever worrying about setting up and keeping updated their software environment.The JupyterHub project provides a multiple-user platform for Jupyter Notebooks and it is very easy to install and configure on a single server. However, when we need to provide computational resources to a large pool of users, we need to distribute the users on a cluster of machines, the best way to achieve scalability is thanks to the container orchestration platform Kubernetes.In this tutorial we will work through the installation of Kubernetes on a set of Jetstream Virtual Machines, setup persistent storage and install a bare-bone JupyterHub deployment using the zero-to-jupyterhub recipe provided by the Jupyter team.Then we will customize the setup configuring authentication (XSEDE, Globus or Github), choosing our preferred software environment for the users via Docker.Finally we will show how to execute computational jobs, either interfacing with the web APIs of a “test gateway” to submit jobs or launching a pool of workers on Kubernetes and execute a distributed computation (using dask).
DOI: 10.6084/m9.figshare.7137899.v1
title: PLOS one Supplementary Data.xlsx

description: This dataset provides the saccade probobability for various epochs following TMS (columns). Individual data are provided on each row.
DOI: 10.6084/m9.figshare.7137878
title: Physiological Effects of Yoga in Healthy Women: A Novel Perspective

description: These are the results from our research on ECG RR and JT intervals variation in yoga poses and between them in young healthy women.We had 22 participants (women) in this study. We used ECG recording device to monitor their cardiovascular response while doing different yoga poses. Women were instructed to do 10 minutes relaxation in Savasana following warm up doing Surya Namaskar, and after that - doing 12 different yoga poses with rest pauses between them. Savasana and each yoga pose were analyzed in the means of RR and JT intervals and these results are in data we provided. We exported ECG data from the recorder via Kaunas Kruvis program. This research was approved by Lithuanian University of Health Sciences Biomedical Research Ethics Commitee (2013-10-11, No. BEC-SRFP (M) - 25).
DOI: 10.7284/122976
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS16137 using a Raytheon 300 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7137884.v2
title: Hands-on Tutorial Deploying Kubernetes and JupyterHub on Jetstream

description: Jupyter Notebooks have become a mainstream tool for interactive computing in every field of science. Being a web-based platform, they are naturally suited to serve as companion application to Science Gateways: a scientist can use a Jupyter Notebook in their browser to pre-process inputs, launch a job on the Science Gateway via web API and then access, analyze, plot and postprocess the job outputs, without ever worrying about setting up and keeping updated their software environment.The JupyterHub project provides a multiple-user platform for Jupyter Notebooks and it is very easy to install and configure on a single server. However, when we need to provide computational resources to a large pool of users, we need to distribute the users on a cluster of machines, the best way to achieve scalability is thanks to the container orchestration platform Kubernetes.In this tutorial we will work through the installation of Kubernetes on a set of Jetstream Virtual Machines, setup persistent storage and install a bare-bone JupyterHub deployment using the zero-to-jupyterhub recipe provided by the Jupyter team.Then we will customize the setup configuring authentication (XSEDE, Globus or Github), choosing our preferred software environment for the users via Docker.Finally we will show how to execute computational jobs, either interfacing with the web APIs of a “test gateway” to submit jobs or launching a pool of workers on Kubernetes and execute a distributed computation (using dask).
DOI: 10.6084/m9.figshare.7137860
title: Combining morphological and molecular data to reconstruct the phylogeny of avian Haemosporida

description: The traditional classification of avian Haemosporida is based mainly on morphology and life history traits. Recently, molecular hypotheses have challenged the traditional classification, leading to contradictory opinions on whether morphology is phylogenetically informative. However, the morphology has never been used to reconstruct the relationships within the group. We inferred the phylogeny of avian Haemosporida from 133 morphological characters present in blood stages. We included all species with at least one mitochondrial gene characterized (n= 93). The morphological hypothesis was compared to the one retrieved from mitochondrial DNA (mtDNA) nucleotide sequences and a hypothesis that used combination of morphological and molecular data (i.e., total evidence). In order to recover the evolutionary history and identify phylogenetic and taxonomic informative characters, they were mapped on the total evidence phylogeny. The morphological hypothesis presented more polytomies than the other two, specially within <i>Haemoproteus</i>. In the molecular hypothesis the two <i>Haemoproteus</i>subgenera are paraphyletic, and some relationships within <i>Parahaemoproteus</i>were resolved. By combining the morphological and molecular data, we were able to resolve the majority of polytomies and posterior probabilities increased. We identified a unique combination of morphological traits clearly differentiating avian Haemosporida genera, sub-genera of <i>Leucocytozoon</i>and <i>Haemoproteus</i>, and some <i>Plasmodium</i>sub-genera. <i>Plasmodium</i>the highest number of synapomorphies. Furthermore, 86% of the species presented a unique combination of taxonomically informative characters. A limiting factor was the mismatch of traits characterized in species descriptions, leading to a morphological matrix with considerable amount of missing data, particularly for the stages of early young and young gametocytes (67% of all missing data). Characters lacking information for the majority of species included the color of pigment granules, the cytoplasm appearance, and the presence and dimensions of vacuoles. According to our results, the combination of morphology and mtDNA proved to be a robust alternative to reconstruct the relationships among avian Haemosporida, obtaining a resolution and support similar to the one obtained using full mitochondrial genome sequences for over 100 lineages.
DOI: 10.6084/m9.figshare.7137878.v1
title: FINAL ECG RESULTS.xlsx

description: These are the results from our research on ECG RR and JT intervals variation in yoga poses and between them in young healthy women.We had 22 participants (women) in this study. We used ECG recording device to monitor their cardiovascular response while doing different yoga poses. Women were instructed to do 10 minutes relaxation in Savasana following warm up doing Surya Namaskar, and after that - doing 12 different yoga poses with rest pauses between them. Savasana and each yoga pose were analyzed in the means of RR and JT intervals and these results are in data we provided. We exported ECG data from the recorder via Kaunas Kruvis program. This research was approved by Lithuanian University of Health Sciences Biomedical Research Ethics Commitee (2013-10-11, No. BEC-SRFP (M) - 25).
DOI: 10.7284/122977
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS16137 using a Raytheon 320 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7137860.v1
title: Combining morphological and molecular data to reconstruct the phylogeny of avian Haemosporida

description: The traditional classification of avian Haemosporida is based mainly on morphology and life history traits. Recently, molecular hypotheses have challenged the traditional classification, leading to contradictory opinions on whether morphology is phylogenetically informative. However, the morphology has never been used to reconstruct the relationships within the group. We inferred the phylogeny of avian Haemosporida from 133 morphological characters present in blood stages. We included all species with at least one mitochondrial gene characterized (n= 93). The morphological hypothesis was compared to the one retrieved from mitochondrial DNA (mtDNA) nucleotide sequences and a hypothesis that used combination of morphological and molecular data (i.e., total evidence). In order to recover the evolutionary history and identify phylogenetic and taxonomic informative characters, they were mapped on the total evidence phylogeny. The morphological hypothesis presented more polytomies than the other two, specially within <i>Haemoproteus</i>. In the molecular hypothesis the two <i>Haemoproteus</i>subgenera are paraphyletic, and some relationships within <i>Parahaemoproteus</i>were resolved. By combining the morphological and molecular data, we were able to resolve the majority of polytomies and posterior probabilities increased. We identified a unique combination of morphological traits clearly differentiating avian Haemosporida genera, sub-genera of <i>Leucocytozoon</i>and <i>Haemoproteus</i>, and some <i>Plasmodium</i>sub-genera. <i>Plasmodium</i>the highest number of synapomorphies. Furthermore, 86% of the species presented a unique combination of taxonomically informative characters. A limiting factor was the mismatch of traits characterized in species descriptions, leading to a morphological matrix with considerable amount of missing data, particularly for the stages of early young and young gametocytes (67% of all missing data). Characters lacking information for the majority of species included the color of pigment granules, the cytoplasm appearance, and the presence and dimensions of vacuoles. According to our results, the combination of morphology and mtDNA proved to be a robust alternative to reconstruct the relationships among avian Haemosporida, obtaining a resolution and support similar to the one obtained using full mitochondrial genome sequences for over 100 lineages.
DOI: 10.7284/122978
title: Gyrocompass data collected during research cruise WS16137 using a SGB Meridian instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7137824
title: Motif Scanning

description: The Prokop lab database of motif conservation for genes analyzed to date
DOI: 10.7284/122988
title: Hygrometer data collected during research cruise WS16137 using a RM Young 41372VC instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122986
title: INS (Inertial Navigation System) data collected during research cruise WS16137 using a Applanix POS/MV-320 V2 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122979
title: Radiometer data collected during research cruise WS16137 using a Eppley PSP instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122980
title: Radiometer data collected during research cruise WS16137 using a Eppley TUV instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122984
title: Radiometer data collected during research cruise WS16137 using a Eppley PIR instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122983
title: Rain Gauge data collected during research cruise WS16137 using a OSI ORG-815 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7135886
title: Tables 1 and 2, CSF Groups 1 and 2 data.

description: Molecular characterization of viruses associated with encephalitis in São Paulo, Brazil<br>
DOI: 10.7284/122991
title: Singlebeam Echosounder data collected during research cruise WS16137 using a Knudsen 3260 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122981
title: Water Temperature data collected during research cruise WS16137 using a Sea-Bird SBE-38 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7135886.v1
title: Tables 1 and 2, CSF Groups 1 and 2 data.

description: Molecular characterization of the etiology of non-seasonal viral encephalitis in patients attended at a referral hospital in the city of São Paulo, Brazil. <br>
DOI: 10.7284/122982
title: TSG (Thermosalinograph) data collected during research cruise WS16137 using a Sea-Bird SBE-45 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7135886.v2
title: Tables 1 and 2, CSF Groups 1 and 2 data.

description: Molecular characterization of the etiology of non-seasonal viral encephalitis in patients attended at a referral hospital in the city of São Paulo, Brazil. <br>
DOI: 10.6084/m9.figshare.7135886.v3
title: Tables 1 and 2, CSF Groups 1 and 2 data.

description: Molecular characterization of the etiology of non-seasonal viral encephalitis in patients attended at a referral hospital in the city of São Paulo, Brazil. <br>
DOI: 10.7284/122992
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS16140 using a Raytheon 320 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7135886.v4
title: Tables 1 and 2, CSF Groups 1 and 2 data.

description: Molecular characterization of viruses associated with encephalitis in São Paulo, Brazil<br>
DOI: 10.7284/123004
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS16143 using a Raytheon 300 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7133945
title: Leptogaster minomensis holotype

description: wing
DOI: 10.6084/m9.figshare.7135886.v5
title: Tables 1 and 2, CSF Groups 1 and 2 data.

description: Molecular characterization of viruses associated with encephalitis in São Paulo, Brazil<br>
DOI: 10.7284/123005
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS16143 using a Raytheon 320 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.25377/sussex.7133897
title: Research data for paper ‘A central control circuit for encoding perceived food value’.

description: Behavioural and electrophysiological data used in the figures for paper published in Science Advances [23 November 2018].<br><b>Abstract for paper</b><br> Hunger state can substantially alter the perceived value of a stimulus, even to the extent that the same sensory cue can trigger antagonistic behaviors. How the nervous system uses such graded perceptual shifts to select between opposed motor patterns remains enigmatic. Here we challenged food-deprived and satiated <i>Lymnaea</i> to choose between two mutually exclusive behaviors, ingestion or egestion, produced by the same feeding central pattern generator. Decoding the underlying neural circuit reveals that the activity of central dopaminergic interneurons defines hunger state and drives network reconfiguration, biasing satiated animals towards the rejection of stimuli deemed palatable by food-deprived ones. By blocking the action of these neurons, satiated animals can be reconfigured to exhibit a hungry animal phenotype. This centralized mechanism occurs in the complete absence of sensory retuning and generalizes across different sensory modalities, allowing food-deprived animals to increase their perception of food value in a stimulus-independent manner to maximize potential calorific intake.
DOI: 10.25377/sussex.7133897.v1
title: Research data for paper ‘A central control circuit for encoding perceived food value’.

description: Behavioural and electrophysiological data used in the figures for paper published in Science Advances [23 November 2018].<br><b>Abstract for paper</b><br> Hunger state can substantially alter the perceived value of a stimulus, even to the extent that the same sensory cue can trigger antagonistic behaviors. How the nervous system uses such graded perceptual shifts to select between opposed motor patterns remains enigmatic. Here we challenged food-deprived and satiated <i>Lymnaea</i> to choose between two mutually exclusive behaviors, ingestion or egestion, produced by the same feeding central pattern generator. Decoding the underlying neural circuit reveals that the activity of central dopaminergic interneurons defines hunger state and drives network reconfiguration, biasing satiated animals towards the rejection of stimuli deemed palatable by food-deprived ones. By blocking the action of these neurons, satiated animals can be reconfigured to exhibit a hungry animal phenotype. This centralized mechanism occurs in the complete absence of sensory retuning and generalizes across different sensory modalities, allowing food-deprived animals to increase their perception of food value in a stimulus-independent manner to maximize potential calorific intake.
DOI: 10.7284/123006
title: Gyrocompass data collected during research cruise WS16143 using a SGB Meridian instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123013
title: INS (Inertial Navigation System) data collected during research cruise WS16143 using a Applanix POS/MV-320 V2 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.12629051.v2
title: AMBER Atlas of Instream Barriers in Europe

description: A geo-referenced database of 629,955 unique artificial instream barriers in 36 European countries produced by the AMBER Project (Adaptive Management of Barriers in European Rivers) funded under European Union’s Horizon 2020 Research and Innovation program, grant agreement No 689682<br>Data for Figure 2: Observed barrier densities, ground-truthed barrier densities, and modelled barrier densities for aggregated ECRINS sub-basins<br>Field data for 147 test rivers (reaches) <br><br>https://amber.international/ <br><br><br>
DOI: 10.7284/123033
title: Multiplexed data collected during research cruise WS16195 using a Miami VIDS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7133741
title: Usage and opinions of publishing metrics, 2016

description: This is data gathered from a survey carried out in 2016.<br>The survey asked authors of research what metrics they use when deciding where to submit their content and their thoughts on the reliability and future use of these metrics. <br>This survey was carried out by Springer Nature.
DOI: 10.7284/123032
title: Anemometer data collected during research cruise WS16195 using a RM Young 05106 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.25375/uct.7133738
title: VaccCompData

description: This dataset is an R package bundle used to create datasets used in the paper 'A comparison of antigen-specific T cell responses induced by six novel tuberculosis vaccine candidates'.It contains the Excel spreadsheets with trial-specific data used to create the above datasets and the R data frames used to generate the figures in the paper. In addition, it also contains R code used to create these data objects. See the package README and the vignette in the package entitled ‘VaccCompData’ for details. It is also available on Github at: MiguelRodo/VaccCompData.<br>
DOI: 10.6084/m9.figshare.7133741.v1
title: Usage and opinions of publishing metrics, 2016

description: This is data gathered from a survey carried out in 2016.<br>The survey asked authors of research what metrics they use when deciding where to submit their content and their thoughts on the reliability and future use of these metrics. <br>This survey was carried out by Springer Nature.
DOI: 10.7284/123028
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise WS16195 using a Sea-Bird SBE-911+ instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition