cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11309489
title: Spatial distributions of wind speed, SWH, LSC from the baseline run, and residual LSC from the default model minus those from the model without winds, heat flux, river inputs, strait exchanges, waves, and that using the MR grids during a strong wind event in 11 September 2014, respectively.

description: This work revisited the dynamics of deep-lake gyres and coastal circulation for Lake Michigan by using observations and modeling system. Few works had been done to comprehensively discuss the wind-, density-, and wave-driven circulation using a high-resolution, wave-current coupled model. The formation, dynamics and connection of the offshore and nearshore circulation in this representative large lake of the Great Lakes system was given detailed investigations in this study.
DOI: 10.6084/m9.figshare.11309450
title: Residual LSC in July from the default model and minus the results produced from the model without river inputs, strait exchanges, waves, and that using the MR grids, respectively.

description: This work revisited the dynamics of deep-lake gyres and coastal circulation for Lake Michigan by using observations and modeling system. Few works had been done to comprehensively discuss the wind-, density-, and wave-driven circulation using a high-resolution, wave-current coupled model. The formation, dynamics and connection of the offshore and nearshore circulation in this representative large lake of the Great Lakes system was given detailed investigations in this study.
DOI: 10.6084/m9.figshare.11309450.v1
title: Residual LSC in July from the default model and minus the results produced from the model without river inputs, strait exchanges, waves, and that using the MR grids, respectively.

description: This work revisited the dynamics of deep-lake gyres and coastal circulation for Lake Michigan by using observations and modeling system. Few works had been done to comprehensively discuss the wind-, density-, and wave-driven circulation using a high-resolution, wave-current coupled model. The formation, dynamics and connection of the offshore and nearshore circulation in this representative large lake of the Great Lakes system was given detailed investigations in this study.
DOI: 10.6084/m9.figshare.11309432
title: BC_fMRI

description: BC fMRI data
DOI: 10.6084/m9.figshare.11309435
title: Monthly averaged LSC in July from various wind scenarios and wind stress curl from the NNM winds.

description: This work revisited the dynamics of deep-lake gyres and coastal circulation for Lake Michigan by using observations and modeling system. Few works had been done to comprehensively discuss the wind-, density-, and wave-driven circulation using a high-resolution, wave-current coupled model. The formation, dynamics and connection of the offshore and nearshore circulation in this representative large lake of the Great Lakes system was given detailed investigations in this study.
DOI: 10.6084/m9.figshare.11309429
title: Identifying and applying an optimum set of environmental variables in species distribution models

description: Predictive models such as species distribution models (SDMs) are increasingly applied to inform conservation efforts and management decisions. A thoughtful predictor choice, and hence the variable selection process, is a challenge when modeling large communities. Often, variable choice is made for an entire community and not for specific species, resulting in less appropriate predictors for at least some species and affecting model performance and predicted distributions. Using 2 German river catchments as a model system, we investigated (1) application of boosted regression trees (BRTs) as a variable selection procedure to choose the optimal set of environmental predictors and (2) whether model performance is increased by applying custom-made predictor sets to individual species. From a community of 67 benthic macroinvertebrate species, 10 increased in accuracy with the customized predictor set and 10 species decreased in accuracy. Notably, current preference, stream notation, and functional group differed between these species’ groups, which correspond to varied environmental conditions in their known occurrence sites. The species that increased in accuracy showed a preference toward lowland conditions and were far less widespread than the species that decreased in accuracy. We conclude that BRTs are a useful tool for selecting variables for SDMs on large communities. Also, for specialist, rare, or invasive species, determining a species-specific custom-made predictor set may be preferable because species’ preferences may not be representative of the entire study area. Our study describes a structured variable selection approach that can be readily implemented to predict species distributions informative for river management decisions.
DOI: 10.6084/m9.figshare.11309414
title: Monthly averaged NNM winds, simulated LSC and those without heat flux in the summer of 2014

description: This work revisited the dynamics of deep-lake gyres and coastal circulation for Lake Michigan by using observations and modeling system. Few works had been done to comprehensively discuss the wind-, density-, and wave-driven circulation using a high-resolution, wave-current coupled model. The formation, dynamics and connection of the offshore and nearshore circulation in this representative large lake of the Great Lakes system was given detailed investigations in this study.
DOI: 10.6084/m9.figshare.11309435.v1
title: Monthly averaged LSC in July from various wind scenarios and wind stress curl from the NNM winds.

description: This work revisited the dynamics of deep-lake gyres and coastal circulation for Lake Michigan by using observations and modeling system. Few works had been done to comprehensively discuss the wind-, density-, and wave-driven circulation using a high-resolution, wave-current coupled model. The formation, dynamics and connection of the offshore and nearshore circulation in this representative large lake of the Great Lakes system was given detailed investigations in this study.
DOI: 10.6084/m9.figshare.11309429.v1
title: Identifying and applying an optimum set of environmental variables in species distribution models

description: Predictive models such as species distribution models (SDMs) are increasingly applied to inform conservation efforts and management decisions. A thoughtful predictor choice, and hence the variable selection process, is a challenge when modeling large communities. Often, variable choice is made for an entire community and not for specific species, resulting in less appropriate predictors for at least some species and affecting model performance and predicted distributions. Using 2 German river catchments as a model system, we investigated (1) application of boosted regression trees (BRTs) as a variable selection procedure to choose the optimal set of environmental predictors and (2) whether model performance is increased by applying custom-made predictor sets to individual species. From a community of 67 benthic macroinvertebrate species, 10 increased in accuracy with the customized predictor set and 10 species decreased in accuracy. Notably, current preference, stream notation, and functional group differed between these species’ groups, which correspond to varied environmental conditions in their known occurrence sites. The species that increased in accuracy showed a preference toward lowland conditions and were far less widespread than the species that decreased in accuracy. We conclude that BRTs are a useful tool for selecting variables for SDMs on large communities. Also, for specialist, rare, or invasive species, determining a species-specific custom-made predictor set may be preferable because species’ preferences may not be representative of the entire study area. Our study describes a structured variable selection approach that can be readily implemented to predict species distributions informative for river management decisions.
DOI: 10.6084/m9.figshare.11309432.v1
title: BC_fMRI

description: BC fMRI data
DOI: 10.6084/m9.figshare.11309399
title: Surface temperature produced from FVCOM with the NNM winds using the MR and HR grids versus observed values taken at various NDBC buoys, and SWH produced from SWAN versus observations at various NDBC stations from July 1 to September 30, 2014.

description: This work revisited the dynamics of deep-lake gyres and coastal circulation for Lake Michigan by using observations and modeling system. Few works had been done to comprehensively discuss the wind-, density-, and wave-driven circulation using a high-resolution, wave-current coupled model. The formation, dynamics and connection of the offshore and nearshore circulation in this representative large lake of the Great Lakes system was given detailed investigations in this study.
DOI: 10.6084/m9.figshare.11309414.v1
title: Monthly averaged NNM winds, simulated LSC and those without heat flux in the summer of 2014

description: This work revisited the dynamics of deep-lake gyres and coastal circulation for Lake Michigan by using observations and modeling system. Few works had been done to comprehensively discuss the wind-, density-, and wave-driven circulation using a high-resolution, wave-current coupled model. The formation, dynamics and connection of the offshore and nearshore circulation in this representative large lake of the Great Lakes system was given detailed investigations in this study.
DOI: 10.6084/m9.figshare.11309399.v1
title: Surface temperature produced from FVCOM with the NNM winds using the MR and HR grids versus observed values taken at various NDBC buoys, and SWH produced from SWAN versus observations at various NDBC stations from July 1 to September 30, 2014.

description: This work revisited the dynamics of deep-lake gyres and coastal circulation for Lake Michigan by using observations and modeling system. Few works had been done to comprehensively discuss the wind-, density-, and wave-driven circulation using a high-resolution, wave-current coupled model. The formation, dynamics and connection of the offshore and nearshore circulation in this representative large lake of the Great Lakes system was given detailed investigations in this study.
DOI: 10.6084/m9.figshare.11309312
title: Meniscal injury (Arthroscopy)

description: A retrospective study was performed on 597 patients undergoing arthroscopic meniscus injury repair in the Department of Joint Surgery, the First Affiliated Hospital of University from January 2013 to May 2018, including 250 males and 352 females, with the gender ratio (male: female) of 0.71:1 and the average age of (46.28±14.55). Among the patients, 291 suffered from right knee meniscus injury, accounting for 48.74%, with an average age of 46.47 years old; 306 suffered from left knee meniscus injury, accounting for 51.26%, with an average age of 46.37 years old; 143 suffered from BMCI, accounting for 23.95%, with an average age of 48.78 years old; 192 suffered from medial meniscus injury, accounting for 32.16%, with an average age of 44.96 years old; 261 suffered from lateral meniscus injury, accounting for 43.71%, with an average age of 45.91 years old.
DOI: 10.6084/m9.figshare.11309372
title: STROKE BOTH GROUPS.sav

description: The data consists of baseline and post treatment mean scores of the Chinese adapted Fugl Meyer Upper Extremity Measure, Barthel Index and the Brunnstrom Recovery Stages. It also includes the demographic details of all the participants.<br>
DOI: 10.6084/m9.figshare.11309312.v1
title: Meniscal injury (Arthroscopy)

description: A retrospective study was performed on 597 patients undergoing arthroscopic meniscus injury repair in the Department of Joint Surgery, the First Affiliated Hospital of University from January 2013 to May 2018, including 250 males and 352 females, with the gender ratio (male: female) of 0.71:1 and the average age of (46.28±14.55). Among the patients, 291 suffered from right knee meniscus injury, accounting for 48.74%, with an average age of 46.47 years old; 306 suffered from left knee meniscus injury, accounting for 51.26%, with an average age of 46.37 years old; 143 suffered from BMCI, accounting for 23.95%, with an average age of 48.78 years old; 192 suffered from medial meniscus injury, accounting for 32.16%, with an average age of 44.96 years old; 261 suffered from lateral meniscus injury, accounting for 43.71%, with an average age of 45.91 years old.
DOI: 10.6084/m9.figshare.11309264
title: Untitled Item

description: ddata of gene
DOI: 10.6084/m9.figshare.11309264.v1
title: Untitled Item

description: ddata of gene
DOI: 10.6084/m9.figshare.11309216
title: ImmClassifier Training Data Sets

description: These four files are required to properly train the ImmClassifier data.
DOI: 10.6084/m9.figshare.11309216.v2
title: ImmClassifier Training Data Sets

description: These four files are required to properly train the ImmClassifier data.
DOI: 10.6084/m9.figshare.11309216.v1
title: Training Data Sets

description: These four files are required to properly train the ImmClassifier data.
DOI: 10.6084/m9.figshare.11308832
title: MOESM9 of miR-1/206 downregulates splicing factor Srsf9 to promote C2C12 differentiation

description: Additional file 9: Table S4. Functional Clustering output for DAVID analysis of 354 candidate miR-1/206 targets. Candidate miR-1/206 targets were uploaded to DAVID and the functional clustering tool was applied to the gene set. 21 GO term clusters of related gene sets had an enrichment score greater than 1.3, corresponding to an average p-value of less than 0.05 for all GO categories in a cluster. Clusters are ranked by descending Enrichment Score and include all output columns from DAVID.
DOI: 10.6084/m9.figshare.11308832.v1
title: MOESM9 of miR-1/206 downregulates splicing factor Srsf9 to promote C2C12 differentiation

description: Additional file 9: Table S4. Functional Clustering output for DAVID analysis of 354 candidate miR-1/206 targets. Candidate miR-1/206 targets were uploaded to DAVID and the functional clustering tool was applied to the gene set. 21 GO term clusters of related gene sets had an enrichment score greater than 1.3, corresponding to an average p-value of less than 0.05 for all GO categories in a cluster. Clusters are ranked by descending Enrichment Score and include all output columns from DAVID.
DOI: 10.6084/m9.figshare.11308826
title: MOESM8 of miR-1/206 downregulates splicing factor Srsf9 to promote C2C12 differentiation

description: Additional file 8: Table S3. TargetScan-predicted miR-1/206 targets that decrease during C2C12 differentiation. Predicted mouse miR-1/206 targets from TargetScan v. 7.2 were crossed with all mRNAs that decreased by 1.3-fold or greater during C2C12 differentiation. This filtered the list of all 896 candidate targets to 354 that were down-regulated at the mRNA level. This is the list that was used for functional clustering gene ontology analysis with the DAVID database. Fold change from D0 to D6 is presented along with MRE scores from TargetScan.
DOI: 10.6084/m9.figshare.11308820
title: MOESM7 of miR-1/206 downregulates splicing factor Srsf9 to promote C2C12 differentiation

description: Additional file 7: Table S2. C2C12 RNAâ€“Seq data. mRNA from C2C12 day 6 myotubes (AD1, AD2, AD3) and proliferating myoblasts (BD1, BD2, BD3) was sequenced with a paired end protocol on an Illumina HiSEQ. The table presents reads per million aligned to the mouse mm9 genome. Column A is the UCSC Gene Symbol and Columns B-E list chromosomal coordinates and coding strand designation.
DOI: 10.6084/m9.figshare.11308820.v1
title: MOESM7 of miR-1/206 downregulates splicing factor Srsf9 to promote C2C12 differentiation

description: Additional file 7: Table S2. C2C12 RNAâ€“Seq data. mRNA from C2C12 day 6 myotubes (AD1, AD2, AD3) and proliferating myoblasts (BD1, BD2, BD3) was sequenced with a paired end protocol on an Illumina HiSEQ. The table presents reads per million aligned to the mouse mm9 genome. Column A is the UCSC Gene Symbol and Columns B-E list chromosomal coordinates and coding strand designation.
DOI: 10.6084/m9.figshare.11308826.v1
title: MOESM8 of miR-1/206 downregulates splicing factor Srsf9 to promote C2C12 differentiation

description: Additional file 8: Table S3. TargetScan-predicted miR-1/206 targets that decrease during C2C12 differentiation. Predicted mouse miR-1/206 targets from TargetScan v. 7.2 were crossed with all mRNAs that decreased by 1.3-fold or greater during C2C12 differentiation. This filtered the list of all 896 candidate targets to 354 that were down-regulated at the mRNA level. This is the list that was used for functional clustering gene ontology analysis with the DAVID database. Fold change from D0 to D6 is presented along with MRE scores from TargetScan.
DOI: 10.6084/m9.figshare.11308814
title: MOESM6 of miR-1/206 downregulates splicing factor Srsf9 to promote C2C12 differentiation

description: Additional file 6: Table S1. Primer sequences. All primer sequences are presented 5’ ➔ 3’.
DOI: 10.6084/m9.figshare.11308814.v1
title: MOESM6 of miR-1/206 downregulates splicing factor Srsf9 to promote C2C12 differentiation

description: Additional file 6: Table S1. Primer sequences. All primer sequences are presented 5’ ➔ 3’.
DOI: 10.6084/m9.figshare.11308697
title: MOESM2 of Multiple selective sweeps of ancient polymorphisms in and around LTα located in the MHC class III region on chromosome 6

description: Additional file 2 : Table S1. contains the frequency of alleles at polymorphic sites across LTα and 5′ regulatory region in global populations, and estimates of per site FST. Tables S2. gives summary statistics for the 5′ regulatory region only. Table S3. lists the observed Tajima’s D (DT) statistics for the LTα gene and their corresponding P-values under different scenarios of population growth. Table S4. shows the observed Fay and Wu’s H (H) statistics for the LTα gene and their corresponding P-values under different scenarios of population growth. Table S5. lists the observed DT statistics for the 5′ regulatory region and their corresponding P-values for different scenarios of population growth. Table S6. contains the observed H statistics for the 5′ regulatory region and their corresponding P-values under different scenarios of population growth. Table S7A. presents haplotype frequencies in global populations. Table S7B. lists the polymorphic sites where the highest-frequency haplotypes in the network differ from one another and also indicates the alleles (on these haplotypes) that are shared with Neandertal and Denisovan genomes. Table S8. presents the frequencies of common haplotypes in non-African populations. Table S9. shows the frequencies of common haplotypes in African populations. Table S10. gives the genomic coordinates for markers in the LD plots (spanning ~9.64 kbs) in Fig. 3 and in Additional file 1: Figure S1. Table S11. gives the genomic coordinates for markers in the LD plots (spanning ~35.5 kbs) in Additional file 1: Figure S2. Table S12. lists outlier standardized |iHS| and |nSL| scores for SNPs in each population. Table S13. presents the inferred ages of mutations across LTα and the 5′ regulatory region.
DOI: 10.6084/m9.figshare.11308697.v1
title: MOESM2 of Multiple selective sweeps of ancient polymorphisms in and around LTα located in the MHC class III region on chromosome 6

description: Additional file 2 : Table S1. contains the frequency of alleles at polymorphic sites across LTα and 5′ regulatory region in global populations, and estimates of per site FST. Tables S2. gives summary statistics for the 5′ regulatory region only. Table S3. lists the observed Tajima’s D (DT) statistics for the LTα gene and their corresponding P-values under different scenarios of population growth. Table S4. shows the observed Fay and Wu’s H (H) statistics for the LTα gene and their corresponding P-values under different scenarios of population growth. Table S5. lists the observed DT statistics for the 5′ regulatory region and their corresponding P-values for different scenarios of population growth. Table S6. contains the observed H statistics for the 5′ regulatory region and their corresponding P-values under different scenarios of population growth. Table S7A. presents haplotype frequencies in global populations. Table S7B. lists the polymorphic sites where the highest-frequency haplotypes in the network differ from one another and also indicates the alleles (on these haplotypes) that are shared with Neandertal and Denisovan genomes. Table S8. presents the frequencies of common haplotypes in non-African populations. Table S9. shows the frequencies of common haplotypes in African populations. Table S10. gives the genomic coordinates for markers in the LD plots (spanning ~9.64 kbs) in Fig. 3 and in Additional file 1: Figure S1. Table S11. gives the genomic coordinates for markers in the LD plots (spanning ~35.5 kbs) in Additional file 1: Figure S2. Table S12. lists outlier standardized |iHS| and |nSL| scores for SNPs in each population. Table S13. presents the inferred ages of mutations across LTα and the 5′ regulatory region.
DOI: 10.6084/m9.figshare.11308625
title: MOESM2 of deltaRpkm: an R package for a rapid detection of differential gene presence between related bacterial genomes

description: Additional file 2. R usage script for a quick start.
DOI: 10.6084/m9.figshare.11308625.v1
title: MOESM2 of deltaRpkm: an R package for a rapid detection of differential gene presence between related bacterial genomes

description: Additional file 2. R usage script for a quick start.
DOI: 10.6084/m9.figshare.11308544
title: MOESM1 of Molecular and evolutionary characterization of norovirus GII.17 in the northern region of Brazil

description: Additional file 1. The final database comprised 85 sequences of GII.17 and 12 described sequences evaluated in this study.
DOI: 10.6084/m9.figshare.11308544.v1
title: MOESM1 of Molecular and evolutionary characterization of norovirus GII.17 in the northern region of Brazil

description: Additional file 1. The final database comprised 85 sequences of GII.17 and 12 described sequences evaluated in this study.
DOI: 10.6084/m9.figshare.11308517
title: MOESM6 of Adoption, implementation and sustainability of school-based physical activity and sedentary behaviour interventions in real-world settings: a systematic review

description: Additional file 6. MMAT risk of bias tool.
DOI: 10.6084/m9.figshare.11308517.v1
title: MOESM6 of Adoption, implementation and sustainability of school-based physical activity and sedentary behaviour interventions in real-world settings: a systematic review

description: Additional file 6. MMAT risk of bias tool.
DOI: 10.6084/m9.figshare.11308457
title: MOESM1 of Chromosome level assembly and comparative genome analysis confirm lager-brewing yeasts originated from a single hybridization

description: Additional file 1. A Gene annotations of the long-read assembly of CBS 1483 as predicted by MAKER2. B Added sequence in the long-read assembly relative to the van den Broek et al. 2015 assembly. C Lost sequence in the long-read assembly relative to the van den Broek et al. 2015 assembly. D Gene ontology analysis of genes identified in the long-read assembly which were absent in the van den Broek et al. 2015 assembly. E Genes from brewing-relevant subtelomeric gene families in the long-read assembly of CBS 1483. F Heterozygous sequences in the long-read assembly of CBS 1483. G ORFs with copy number deviating from the copy number of surrounding sequences in the long-read assembly of CBS 1483. H Sequences of the repeats identified in FLO genes of S. cerevisiae S288C and S. eubayanus CBS 12357.