cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gemzaz
title: Occurrence Download

description: A dataset containing 1016346 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((10.58670799806848 40.92226156946407, 10.58670799806848 51.75700516880109, -10.173017805596453 51.75700516880109, -10.173017805596453 40.92226156946407, 10.58670799806848 40.92226156946407))",
 "EventDate is 2013-09-01,2013-09-30"
 ]
}

 The dataset includes 1016346 records from 1287 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044623-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vh6rjf
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dysaphis tulipae (Boyer de Fonscolombe, 1841)"
 ]
}

 The dataset includes 88 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025983-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zbgqqq
title: Occurrence Download

description: A dataset containing 8439 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sabellaria spinulosa (Leuckart, 1849))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8439 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025982-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4fkvka
title: Occurrence Download

description: A dataset listing the 103 species recorded in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.11_1",
 "TaxonKey is Aves",
 "Year 2017-2017"
 ]
}

 The dataset's 103 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025968-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9n5mzz
title: Occurrence Download

description: A dataset containing 143 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tetranychus turkestani (Ugarov & Nikolskii, 1937)"
 ]
}

 The dataset includes 143 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025984-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2b3gs9
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Spirorbis marioni Caullery & Mesnil, 1897)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025985-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11225139
title: Replication package for "Finding the Wise and the Wisdom in a Crowd: Estimating Underlying Qualities of Reviewers and Items"

description: Replication Package for the article "Finding the Wise and the Wisdom in a Crowd: Estimating Underlying Qualities of Reviewers and Items" by Nicolas Carayol and Matthew O. Jackson, to be published in the Economic Journal
DOI: 10.5281/zenodo.11225140
title: Replication package for "Finding the Wise and the Wisdom in a Crowd: Estimating Underlying Qualities of Reviewers and Items"

description: Replication Package for the article "Finding the Wise and the Wisdom in a Crowd: Estimating Underlying Qualities of Reviewers and Items" by Nicolas Carayol and Matthew O. Jackson, to be published in the Economic Journal
DOI: 10.15468/dl.kxz9db
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pileolaria militaris Claparède, 1870)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025987-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z6zk8s
title: Occurrence Download

description: A dataset containing 297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.11_1",
 "TaxonKey is Aves",
 "Year 2018-2018"
 ]
}

 The dataset includes 297 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025988-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ebzhqk
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pileolaria berkeleyana (Rioja, 1942))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 55 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025989-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rbecct
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dendrobium trinervium Ridl."
 ]
}

 The dataset includes 14 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025990-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25688694
title: Supplementary Tables.pdf

description: In this study, we demonstrate substantial enrichments of mercury (Hg) and methylmercury (MMHg), along with the presence of microbes capable of metabolizing mercuryHg in sediments of the Haima cold seep, South China Sea. Compared to the reference area, the sediments in the upper sediment column (0-12 cm) of the active-seep area were 2.4 times enriched in Hg and 10.5 times in methylmercuryMMHg. The maxima of MMHg/Hg ratio are about 8 and 18 times higher in the active-seep and inactive-seep area, respectively, than those in the reference area. The Hg stable isotope signatures in the active-seep area showed more distinct positive δ202Hg than those in the reference area. The slope of Δ199Hg/Δ201Hg with 1.23 ± 0.10 in the active-seep area indicate the occurrence of dark redox reactions. Genes related to mercuryHg methylation (hgcA), demethylation (merB) and reduction (merA) were phylogenetically associated with several bacterial and archaeal linages. We roughly estimated an additional 2,835 Mg mercuryHg and 12.6 Mg methylmercuryMMHg are stored in cold seep globally.
DOI: 10.6084/m9.figshare.25688694.v1
title: Supplementary Tables.pdf

description: In this study, we demonstrate substantial enrichments of mercury (Hg) and methylmercury (MMHg), along with the presence of microbes capable of metabolizing mercuryHg in sediments of the Haima cold seep, South China Sea. Compared to the reference area, the sediments in the upper sediment column (0-12 cm) of the active-seep area were 2.4 times enriched in Hg and 10.5 times in methylmercuryMMHg. The maxima of MMHg/Hg ratio are about 8 and 18 times higher in the active-seep and inactive-seep area, respectively, than those in the reference area. The Hg stable isotope signatures in the active-seep area showed more distinct positive δ202Hg than those in the reference area. The slope of Δ199Hg/Δ201Hg with 1.23 ± 0.10 in the active-seep area indicate the occurrence of dark redox reactions. Genes related to mercuryHg methylation (hgcA), demethylation (merB) and reduction (merA) were phylogenetically associated with several bacterial and archaeal linages. We roughly estimated an additional 2,835 Mg mercuryHg and 12.6 Mg methylmercuryMMHg are stored in cold seep globally.
DOI: 10.15468/dl.x5rqbt
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Serpula watsoni Willey, 1905)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 28 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025992-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vkayjb
title: Occurrence Download

description: A dataset containing 297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.11_1",
 "TaxonKey is Aves",
 "Year 2018-2018"
 ]
}

 The dataset includes 297 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025991-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2jftxq
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Serpula hartmanae Reish, 1968)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 28 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025994-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10525928
title: A full-plate global reconstruction of the Neoproterozoic

description: Neoproterozoic tectonic geography was dominated by the formation of the supercontinent Rodinia, its break-up and the subsequent amalgamation of Gondwana. The Neoproterozoic was a tumultuous time of Earth history, with large climatic variations, the emergence of complex life and a series of continent-building orogenies of a scale not repeated until the Cenozoic. Here we synthesise available geological and palaeomagnetic data and build the first full-plate, topological model of the Neoproterozoic that maps the evolution of the tectonic plate configurations during this time. Topological models trace evolving plate boundaries and facilitate the evaluation of “plate tectonic rules” such as subduction zone migration through time when building plate models. There is a rich history of subduction zone proxies preserved in the Neoproterozoic geological record, providing good evidence for the existence of continent-margin and intra-oceanic subduction zones through time. These are preserved either as volcanic arc protoliths accreted in continent-continent, or continent-arc collisions, or as the detritus of these volcanic arcs preserved in successor basins. Despite this, we find that the model presented here still predicts less subduction (ca. 90%) than on the modern earth, suggesting that we have produced a conservative model and are likely underestimating the amount of subduction, either due to a simplification of tectonically complex areas, or because of the absence of preservation in the geological record (e.g. ocean-ocean convergence). Furthermore, the reconstruction of plate boundary geometries provides constraints for global-scale earth system parameters, such as the role of volcanism or ridge production on the planet's icehouse climatic excursion during the Cryogenian. Besides modelling plate boundaries, our model presents some notable departures from previous Rodinia models. We omit India and South China from Rodinia completely, due to long-lived subduction preserved on margins of India and conflicting palaeomagnetic data for the Cryogenian, such that these two cratons act as ‘lonely wanderers’ for much of the Neoproterozoic. We also introduce a Tonian-Cryogenian aged rotation of the Congo-São Francisco Craton relative to Rodinia to better fit palaeomagnetic data and account for thick passive margin sediments along its southern margin during the Tonian. The GPlates files of the model are released to the public and it is our expectation that this model can act as a foundation for future model refinements, the testing of alternative models, as well as providing constraints for both geodynamic and palaeoclimate models.

 

Digital plate model containing:

(a) Euler Poles used in reconstruction

(b) Continental crust polygons used in reconstruction

(c) Convergence plate boundaries

(d) Divergent plate boundaries

(e) Transform plate boundaries

(f) Plate topologies

All files are for use in Gplates 2.0 (www.gplates.org)
DOI: 10.5281/zenodo.10525929
title: A full-plate global reconstruction of the Neoproterozoic

description: Neoproterozoic tectonic geography was dominated by the formation of the supercontinent Rodinia, its break-up and the subsequent amalgamation of Gondwana. The Neoproterozoic was a tumultuous time of Earth history, with large climatic variations, the emergence of complex life and a series of continent-building orogenies of a scale not repeated until the Cenozoic. Here we synthesise available geological and palaeomagnetic data and build the first full-plate, topological model of the Neoproterozoic that maps the evolution of the tectonic plate configurations during this time. Topological models trace evolving plate boundaries and facilitate the evaluation of “plate tectonic rules” such as subduction zone migration through time when building plate models. There is a rich history of subduction zone proxies preserved in the Neoproterozoic geological record, providing good evidence for the existence of continent-margin and intra-oceanic subduction zones through time. These are preserved either as volcanic arc protoliths accreted in continent-continent, or continent-arc collisions, or as the detritus of these volcanic arcs preserved in successor basins. Despite this, we find that the model presented here still predicts less subduction (ca. 90%) than on the modern earth, suggesting that we have produced a conservative model and are likely underestimating the amount of subduction, either due to a simplification of tectonically complex areas, or because of the absence of preservation in the geological record (e.g. ocean-ocean convergence). Furthermore, the reconstruction of plate boundary geometries provides constraints for global-scale earth system parameters, such as the role of volcanism or ridge production on the planet's icehouse climatic excursion during the Cryogenian. Besides modelling plate boundaries, our model presents some notable departures from previous Rodinia models. We omit India and South China from Rodinia completely, due to long-lived subduction preserved on margins of India and conflicting palaeomagnetic data for the Cryogenian, such that these two cratons act as ‘lonely wanderers’ for much of the Neoproterozoic. We also introduce a Tonian-Cryogenian aged rotation of the Congo-São Francisco Craton relative to Rodinia to better fit palaeomagnetic data and account for thick passive margin sediments along its southern margin during the Tonian. The GPlates files of the model are released to the public and it is our expectation that this model can act as a foundation for future model refinements, the testing of alternative models, as well as providing constraints for both geodynamic and palaeoclimate models.

 

Digital plate model containing:

(a) Euler Poles used in reconstruction

(b) Continental crust polygons used in reconstruction

(c) Convergence plate boundaries

(d) Divergent plate boundaries

(e) Transform plate boundaries

(f) Plate topologies

All files are for use in Gplates 2.0 (www.gplates.org)
DOI: 10.5281/zenodo.10596609
title: PALEOMAP PaleoAtlas for GPlates

description: The PALEOMAP PaleoAtlas for GPlates consists of 91 paleogeographic maps spanning the Phanerozoic and late Neoproterozoic. The PaleoAtlas can be directly loaded into GPlates as a Time Dependent Raster file. The paleogeographic maps in the PaleoAtlas illustrate the ancient configuration of the ocean basins and continents, as well as important topographic and bathymetric feat.ures such as mountains, lowlands, shallow sea, continental shelves, and deep oceans. This tutorial also describes how the maps in the PaleoAtlas were made, documents the sources of information used to make the paleogeographic maps, and provides instructions how to plot user-defined paleodata on the paleogeographic maps using the program PaleoDataPlotter.

 

Note: Initial loading of the project file (Scotese_PaleoAtlas_2016_v3.gproj) will take added time due to the absence of cache files.
DOI: 10.5281/zenodo.10596610
title: PALEOMAP PaleoAtlas for GPlates

description: The PALEOMAP PaleoAtlas for GPlates consists of 91 paleogeographic maps spanning the Phanerozoic and late Neoproterozoic. The PaleoAtlas can be directly loaded into GPlates as a Time Dependent Raster file. The paleogeographic maps in the PaleoAtlas illustrate the ancient configuration of the ocean basins and continents, as well as important topographic and bathymetric feat.ures such as mountains, lowlands, shallow sea, continental shelves, and deep oceans. This tutorial also describes how the maps in the PaleoAtlas were made, documents the sources of information used to make the paleogeographic maps, and provides instructions how to plot user-defined paleodata on the paleogeographic maps using the program PaleoDataPlotter.

 

Note: Initial loading of the project file (Scotese_PaleoAtlas_2016_v3.gproj) will take added time due to the absence of cache files.
DOI: 10.5281/zenodo.10596349
title: Plate tectonic reconstructions with continuously closing plates

description: We present a new algorithm for modeling a self-consistent set of global plate polygons. Each plate polygon is composed of a finite list of plate margins, all with different Euler poles. We introduce a ’’continuously closed plate’’ (CCP), such that, as each margin moves independently, the plate polygon remains closed geometrically as a function of time. This method solves emerging needs in computational geodynamics to combine kinematic with dynamic models. Because they have polygons that are too widely spaced in time and have inconsistent motions between margins and plates, traditional global plate tectonic reconstructions have become inadequate for geodynamics. The CCP algorithm has been incorporated into the GPlates open-source paleogeographic system. The algorithm is a set of procedures and data structures that operate on collections of reconstructed geometric data to form closed plate polygons; the main data structures used for each plate polygon are based on a nested hierarchy of topological elements. Reconstructions with CCPs can be created, edited, visualized, and exported with GPlates. The native storage of the dynamic reconstructions is the GPlates Markup Language, GPML, which uses an XML-based file format called GML. We demonstrate the utility of the CCP method by creating a global reconstruction with continuously closing plates from 140 Ma to the present using data from existing, traditional reconstructions.
DOI: 10.5281/zenodo.10596350
title: Plate tectonic reconstructions with continuously closing plates

description: We present a new algorithm for modeling a self-consistent set of global plate polygons. Each plate polygon is composed of a finite list of plate margins, all with different Euler poles. We introduce a ’’continuously closed plate’’ (CCP), such that, as each margin moves independently, the plate polygon remains closed geometrically as a function of time. This method solves emerging needs in computational geodynamics to combine kinematic with dynamic models. Because they have polygons that are too widely spaced in time and have inconsistent motions between margins and plates, traditional global plate tectonic reconstructions have become inadequate for geodynamics. The CCP algorithm has been incorporated into the GPlates open-source paleogeographic system. The algorithm is a set of procedures and data structures that operate on collections of reconstructed geometric data to form closed plate polygons; the main data structures used for each plate polygon are based on a nested hierarchy of topological elements. Reconstructions with CCPs can be created, edited, visualized, and exported with GPlates. The native storage of the dynamic reconstructions is the GPlates Markup Language, GPML, which uses an XML-based file format called GML. We demonstrate the utility of the CCP method by creating a global reconstruction with continuously closing plates from 140 Ma to the present using data from existing, traditional reconstructions.
DOI: 10.6084/m9.figshare.25866646
title: Data sets.pptx

description: Enterotoxigenic <i>Escherichia coli</i> (ETEC) is a diarrhoeal pathogen associated with severe morbidity and mortality among young children in developing countries. At present, there is no vaccine for ETEC. One candidate vaccine antigen, EtpA, is a conserved secreted adhesin that presumably binds to the tips of the <i>E. coli </i>flagellum to link ETEC to host intestinal glycans. EtpA is exported through a Gram-negative, two-partner secretion (TPS) system (type Vb) comprised of the secreted EtpA passenger (TpsA) protein and EtpB (TpsB) a transporter integrated into the outer bacterial membrane. TpsA proteins share a conserved, N-terminal domain followed by an extensive C-terminal domain with divergent sequence repeats. Three constructs of EtpA were prepared and analysed respectively including residues 67 to 447 (EtpA<sup>67-447</sup>), residues 1 to 606 (EtpA<sup>1-606</sup>) and residues 67-930 (EtpA<sup>67-930</sup>). The crystal structure of EtpA<sup>67-447</sup> solved at 1.76 Å resolution revealed a right-handed parallel β-helix with two extra-helical hairpins and an N-terminal β-strand cap. Analyses by circular dichroism spectroscopy confirmed the β-helical fold and indicated high resistance to chemical and thermal denaturation as well as rapid refolding. A theoretical model of full-length EtpA by AlphaFold largely concurs with the crystal structure adding a long β-helical C-terminal domain after an interdomain kink. We propose that robust folding of the TPS domain upon secretion provides a template to extend the N-terminal β-helix into the C-terminal domains of TpsA proteins. Unexpectedly, size exclusion chromatography and molecular pulldown assays with the N-terminal domain of EtpA failed to show any interaction with flagellin implying that other factors may be involved.
DOI: 10.15468/dl.bc5b4h
title: Occurrence Download

description: A dataset containing 76682 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Specimen)",
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "TaxonKey is Cephalanthera damasonium (Mill.) Druce",
 "Year 1990-2024"
 ]
}

 The dataset includes 76682 records from 523 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025981-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9zgj8a
title: Occurrence Download

description: A dataset containing 577 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Spirobranchus tetraceros (Schmarda, 1861))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 577 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025996-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.