cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.hgwwyt
title: Occurrence Download

description: A dataset containing 686 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Otiorhynchus rugifrons (Gyllenhal, 1813)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 686 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000255-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34965/i53412
title: 20240057
DOI: 10.4121/7676f053-769b-42e6-a6f3-cdab9f44c398
title: Data underlying the article: Analysis the Composition of Hydraulic Radial Force on Centrifugal Pump Impeller: A Data-Centric Approach based on CFD dataset

description: Article base Data: "Analysis the Composition of Hydraulic Radial Force on Centrifugal Pump Impeller: A Data-Centric Approach based on CFD dataset" This dataset includes simulation results published in the resource article, all data is stored in a file using CSV format, and the structure of the collection provides data for each graph (subgraph) in the results folder.
DOI: 10.4121/7676f053-769b-42e6-a6f3-cdab9f44c398.v1
title: Data underlying the article: Analysis the Composition of Hydraulic Radial Force on Centrifugal Pump Impeller: A Data-Centric Approach based on CFD dataset

description: Article base Data: "Analysis the Composition of Hydraulic Radial Force on Centrifugal Pump Impeller: A Data-Centric Approach based on CFD dataset" This dataset includes simulation results published in the resource article, all data is stored in a file using CSV format, and the structure of the collection provides data for each graph (subgraph) in the results folder.
DOI: 10.5281/zenodo.12541869
title: Chemical Occurence Data Curation Results with CleanGeoStreamR
DOI: 10.5281/zenodo.13627130
title: Chemical Occurence Data Curation Results with CleanGeoStreamR

description: This data set includes the curated chemical occurrence data from the NORMAN database. It is related with the surface waters. CleanGeoStreamR R package was used for data curation.
DOI: 10.5281/zenodo.13318420
title: Chemical Occurence Data Curation Results with CleanGeoStreamR

description: This data set includes the curated chemical occurrence data from the NORMAN database. It is related with the surface waters. CleanGeoStreamR R package was used for data curation.
DOI: 10.15468/dl.6wyvye
title: Occurrence Download

description: A dataset listing the 36 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypericum perforatum L."
 ]
}

 The dataset's 36 records were derived from 4027 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000251-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d9u67q
title: Occurrence Download

description: A dataset containing 21802 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence, Living Specimen)",
 "Continent is North America",
 "Country is one of (Canada, United States of America, Mexico)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ameiurus natalis (Lesueur, 1819)"
 ]
}

 The dataset includes 21802 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001658-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rkuhtv
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Magnolia tarahumara (Vazquez) A.Vázquez"
 ]
}

 The dataset includes 70 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001659-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cr798q
title: Occurrence Download

description: A dataset containing 7935 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trachycarpus fortunei (Hook.) H.Wendl.)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7935 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001614-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/9zgb56xyjj
title: Maple code for the Cahn-Hilliard spectral radius

description: Maple code to study spectral radius of the matrices which are obtained after the discretisation of the Cahn-Hilliard equation. It is written for 2d geometry and for Jacobi and Gauss-Seidel solvers but can be easily modified for other cases.
DOI: 10.15468/dl.m82tcu
title: Occurrence Download

description: A dataset containing 23545 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Commelina communis L.)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 23545 records from 123 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001660-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14948152
title: A predictive framework for identifying source populations of non-native marine macroalgae: A case study of Chondria tumulosa in the Pacific Ocean

description: Repository includes files used to run the Connectivity Modeling System (CMS) backtracking script, output files from CMS backtracking, files used to run the CMS script on geotagged nets, output files from CMS script on geotagged nets, and Sea Surface Temperature data from Optimum Interpolation Sea Surface Temperature database for each of the regions of intersest outlined in the model.

 

This dataset contains the files associated with the submission of the manuscript "A predictive framework for identifying source populations of non-native marine macroalgae: A case study of Chondria tumulosa in the Pacific Ocean."

 

CMS_Backtracking_Code.zip contains the files used to run the CMS backtracking module. This includes the polygonal settlement areas (12nm_hex.xyz), the cms.sh and getdata.sh scripts, the CMS input files ibm.list, nest_1.nml, runconf.list, and the release file.

 

traj_file_1 is the raw output from the CMS backtracking run.

 

CMS_Net_Code.zip contains the files used to run the CMS model which tracked geotagged marine debris (nets). This includes the cms.sh and getdata.sh scripts, this includes the CMS input files ibm.list, nest_1.nml, runconf.list, and the release file. The zipped folder also includes an R script used to choose a turbulence value (StatsForTurbValue.R).

 

CMS_Net_Output.zip contains the raw output from the CMS backtracking runs, labeled by the diffusivity value used.

 

OISST.zip contains the .csv files generated by downloading the Optimum Interpolation Sea Surface Temperature monthly mean files from each of the regions of interest highlighted by the CMS backtracking module.
DOI: 10.5281/zenodo.14948153
title: A predictive framework for identifying source populations of non-native marine macroalgae: A case study of Chondria tumulosa in the Pacific Ocean

description: Repository includes files used to run the Connectivity Modeling System (CMS) backtracking script, output files from CMS backtracking, files used to run the CMS script on geotagged nets, output files from CMS script on geotagged nets, and Sea Surface Temperature data from Optimum Interpolation Sea Surface Temperature database for each of the regions of intersest outlined in the model.

 

This dataset contains the files associated with the submission of the manuscript "A predictive framework for identifying source populations of non-native marine macroalgae: A case study of Chondria tumulosa in the Pacific Ocean."

 

CMS_Backtracking_Code.zip contains the files used to run the CMS backtracking module. This includes the polygonal settlement areas (12nm_hex.xyz), the cms.sh and getdata.sh scripts, the CMS input files ibm.list, nest_1.nml, runconf.list, and the release file.

 

traj_file_1 is the raw output from the CMS backtracking run.

 

CMS_Net_Code.zip contains the files used to run the CMS model which tracked geotagged marine debris (nets). This includes the cms.sh and getdata.sh scripts, this includes the CMS input files ibm.list, nest_1.nml, runconf.list, and the release file. The zipped folder also includes an R script used to choose a turbulence value (StatsForTurbValue.R).

 

CMS_Net_Output.zip contains the raw output from the CMS backtracking runs, labeled by the diffusivity value used.

 

OISST.zip contains the .csv files generated by downloading the Optimum Interpolation Sea Surface Temperature monthly mean files from each of the regions of interest highlighted by the CMS backtracking module.
DOI: 10.5281/zenodo.14948677
title: 쌍둥이 소수 추측 증명과 골드바흐 추측 증명을 모두 검토
DOI: 10.5281/zenodo.14948678
title: 쌍둥이 소수 추측 증명과 골드바흐 추측 증명을 모두 검토
DOI: 10.6084/m9.figshare.28516796
title: <b><i>Piezo1</i></b><b> balances the osteogenic-tenogenic plasticity of periosteal progenitor cells through the YAP pathway</b>

description: In the early stages of musculoskeletal development, the extremity tendons and bones are derived from limb bud mesenchyme, which eventually become cells of different tissues. Despite this common origin, it was widely believed that tenocytes comprising the tendon and skeletal cells are distinct lineages without interconversion. However, we found that periosteal skeletal progenitor cells could transform between osteogenic and tenogenic commitment. Firstly, we found that the reduction of the cortical thickness in the Prx1 Cre; Piezo1 fl/fl mice is more severe than that in Ocn Cre; Piezo1 fl/fl mice. ScRNA-seq analysis of Prx1+ cells isolated from the periosteum of Prx1 Cre; Ai9/+<i> </i>mice and Prx1 Cre; Piezo1<i> </i>fl/fl; Ai9/+<i> </i>mice, reveals that loss of Piezo1 arrests the periosteal progenitor cells in a progenitor state. Further analysis shows that SCX can label the periosteal progenitor cell population. Piezo1 deficiency leads to upregulation of<i> Scx</i> expression due to the inhibited YAP nuclear localization in periosteal progenitor cells. Loss of <i>Piezo1</i> showed increased tenogenic marker genes and decreased osteogenic marker genes. Furthermore, the periosteal progenitor cells can regenerate the injured tendon more robustly when Piezo1 is absent. Taken together, our data reveal that periosteal SCX+ progenitor cells compromise the osteogenic ability and acquire the tenocyte-biased lineage commitment after loss of Piezo1, providing a strategy to modulate the periosteal progenitor cells for tissue regeneration.
DOI: 10.6084/m9.figshare.28516796.v1
title: <b><i>Piezo1</i></b><b> balances the osteogenic-tenogenic plasticity of periosteal progenitor cells through the YAP pathway</b>

description: In the early stages of musculoskeletal development, the extremity tendons and bones are derived from limb bud mesenchyme, which eventually become cells of different tissues. Despite this common origin, it was widely believed that tenocytes comprising the tendon and skeletal cells are distinct lineages without interconversion. However, we found that periosteal skeletal progenitor cells could transform between osteogenic and tenogenic commitment. Firstly, we found that the reduction of the cortical thickness in the Prx1 Cre; Piezo1 fl/fl mice is more severe than that in Ocn Cre; Piezo1 fl/fl mice. ScRNA-seq analysis of Prx1+ cells isolated from the periosteum of Prx1 Cre; Ai9/+<i> </i>mice and Prx1 Cre; Piezo1<i> </i>fl/fl; Ai9/+<i> </i>mice, reveals that loss of Piezo1 arrests the periosteal progenitor cells in a progenitor state. Further analysis shows that SCX can label the periosteal progenitor cell population. Piezo1 deficiency leads to upregulation of<i> Scx</i> expression due to the inhibited YAP nuclear localization in periosteal progenitor cells. Loss of <i>Piezo1</i> showed increased tenogenic marker genes and decreased osteogenic marker genes. Furthermore, the periosteal progenitor cells can regenerate the injured tendon more robustly when Piezo1 is absent. Taken together, our data reveal that periosteal SCX+ progenitor cells compromise the osteogenic ability and acquire the tenocyte-biased lineage commitment after loss of Piezo1, providing a strategy to modulate the periosteal progenitor cells for tissue regeneration.
DOI: 10.17632/3rm6vpw7bw
title: Data for: Vibrational Analysis of Ag, Cu and Ni Nanobeams Using a Hybrid Continuum-Atomistic Model

description: MATLAB and LAMMPS Codes
DOI: 10.15468/dl.d9rp4t
title: Occurrence Download

description: A dataset containing 13881 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lindernia dubia (L.) Pennell)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13881 records from 247 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001617-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28516898
title: Code for <b>GenFair</b>

description: This repository contains multiple components related to medical report summarization and evaluation. It includes both baseline and proposed methods for generating and evaluating reports, as well as test datasets.
DOI: 10.17632/z3jzk4xcrk
title: Paleomagnetism and geochronology of the Early Cretaceous Dipilto Batholith (NW-Nicaragua): Chortís block large rotation respect to SW-North America

description: Supporting information of this paper describes the caption of the supplementary tables of geochronologic, rock magnetic, and petrographic data in Excel files. Additionally, the geoposition of all sites are in the *.kmz file (Google Earth). The contents are: Table S1 (*xlsx). U-Pb isotopic ages from LA-ICP-MS in single zircon from four samples of the Dipilto Batholith. Table S2 (*xlsx). Rock magnetic properties and petrographic summary of all sites in the Dipilto Batholith. Database 1 (*txt). Paleomagnetic data directions of each sample in the Dipilto Batholith available in the Magnetics Information Consortium (MagIC) database: https://www2.earthref.org/MagIC. Finally, Database 2 (*.kmz). Geopositions (latitude and longitude) of the paleomagnetic and geochronologic sites in this study. This is a *.kmz file of Google Earth.
DOI: 10.15468/dl.dcnmrw
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Magnolia tarahumara (Vazquez) A.Vázquez"
 ]
}

 The dataset includes 70 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001618-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4qupd4
title: Occurrence Download

description: A dataset containing 748 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Haematoxylum campechianum L.)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 748 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001661-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/ztjvhx4587
title: Inthawong et al 2024 Scrub typhus NHP model intradermal inoculation dose evaluation

description: Scrub typhus, endemic to the Asia-Pacific region is caused by Orientia tsutsugamushi and transmitted to humans through bites of infected larval Leptotrombidium mites (chiggers). Currently, no protective vaccines exist. Animal models have substantially advanced our understanding of immune response dynamics, pathophysiology and pathogenesis of scrub typhus. Our group previously validated a non-human primate (NHP) model using an intradermal (ID) challenge approach. To further refine this model, we evaluated the effects of progressively increasing doses of human pathogenic O. tsutsugamushi on disease progression, clinical outcomes, bacterial kinetics and immune responses in rhesus macaques (Macaca mulatta). Macaques were inoculated ID with O. tsutsugamushi strain Karp at doses of 106, 107 and 107.8 based on murine median Lethal Dose (muLD50). All NHPs demonstrated characteristic signs of human scrub typhus, including eschar formation, regional lymphadenopathy, elevated body temperature, and bacteremia. Dose-dependent responses were observed, with higher doses (107 and 107.8 muLD50), showing more severe clinical signs and pronounced adaptive immune responses. Increased production of Th1 and Th2 cytokines, with a significant rise surrogate markers, were observed in the 107 muLD50 group. This study demonstrates the critical role of differential serum IFN- levels in shaping immunity, and suggests that the 107 muLD50 dose is optimal for reliably inducing surrogate markers and immune responses resembling human infection dynamics. Our study highlights the importance of thorough inoculum dose characterisation in animal models to ensure accurate and reproducible outcome measures. The fundamental findings will serve emerging research on scrub typhus, particularly in establishing experimental studies.
DOI: 10.15468/dl.2t592v
title: Occurrence Download

description: A dataset containing 584 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Coptotermes formosanus Shiraki, 1909)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 584 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001662-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z72r6v
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "GbifRegion is Asia",
 "Geometry POLYGON((70.62931 23.41449,74.27182 23.41449,74.27182 24.91815,70.62931 24.91815,70.62931 23.41449))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aegle marmelos (L.) Corrêa"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001663-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sx983e
title: Occurrence Download

description: A dataset containing 990 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pelodiscus sinensis Wiegmann, 1835)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 990 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001619-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bzsr9p
title: Occurrence Download

description: A dataset containing 9070 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence, Living Specimen)",
 "Continent is North America",
 "Country is one of (Mexico, United States of America, Canada)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pylodictis olivaris (Rafinesque, 1818)"
 ]
}

 The dataset includes 9070 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001664-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/k2sgc7kwv9
title: LINF_040016000

description: DNA repair protein RAD50; Leishmania infantum (strain JPCM5)
DOI: 10.21227/p4bc-0w82
title: EEG data on indirect request processing

description: This dataset contains EEG recordings from 21 Korean native speakers (seven males, fourteen females, zero other response; age M = 25.8, SD = 1.9) while they read dialogues containing literal responses or indirect requests. [manuscript abtract]Pragmatic language comprehension, such as indirect request processing, requires going beyond the literal meaning by integrating contextual and linguistic cues. Although event-related potential (ERP) studies have identified neural markers such as P600, they offer limited insight into EEG’s complex temporal and spatial dynamics. To address these limitations, this study applies neural decoding to EEG data by leveraging a convolutional transformer model (EEG-Conformer; Song et al., 2023) to classify neural responses to indirect requests versus literal responses. Whereas the ERP analysis revealed significant effects at 500-800 ms for indirect requests but no effects at an earlier time window, the neural decoding results showed peak classification accuracy (70.0%) at 300-500 ms, 400-600 ms and 500-700 ms time windows, suggesting early differentiation for pragmatic processing. Further analysis demonstrated that replacing the CNN module in EEG-Conformer with AlexNet, LeNet-5, or ResNet improved performance, with ResNet achieving the highest accuracy (90.0%) at 500-700ms. These findings highlight the potential of deep learning-based EEG analysis in neuropragmatics, providing a new approach for investigating pragmatic inference and intention processing beyond traditional ERP methods.
DOI: 10.15468/dl.rv22br
title: Occurrence Download

description: A dataset containing 779099 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lolium perenne L.)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 779099 records from 2881 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001615-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29429840.v1
title: Table. 1. Genome features of L. mesenteroides B22051..xlsx

description: Genome features of <i>L. mesenteroides</i> B22051.
DOI: 10.6084/m9.figshare.29429840
title: Table. 1. Genome features of L. mesenteroides B22051..xlsx

description: Genome features of <i>L. mesenteroides</i> B22051.
DOI: 10.21227/bzf1-e171
title: "Weapon Parameters"

description: "Provide data support for the paper"