cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3544352.v1
title: Supplement 1. R program to calculate maximum-likelihood or restricted maximum-likelihood estimates of model parameters, as well as to calculate and plot profile log-likelihoods, for the Gompertz state-space models with replicated sampling.

description: File List Dennis_etal_Gompertz_state_space_model_with_ replicated_sampling.R Description The computer program, in the open-source R language (R Core Development Team. 2006. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria), uses numerical maximization of a multivariate-normal log-likelihood to compute maximum-likelihood and restricted maximum-likelihood parameter estimates for the Gompertz state-space model of density dependent population growth, for time series abundance data with replicated samples at each observation time. The program also computes and plots profile log-likelihoods for the four model parameters. The data included in the program as an example are the simulated observations appearing in the top panel of Fig. 1 of the main article, and the program was used to produce Fig. 2 in the same paper. Dennis_etal_Gompertz_state_space_model_with_replicated_sampling.R contains annotated code for fitting a stochastic, density-dependent population growth model to time series abundance data in which samples have been replicated at each sampling time.
DOI: 10.6084/m9.figshare.3544349
title: Appendix A. List of all elevational gradients used to test the diversity predictions of the Metabolic Theory of Ecology including locality, citation, taxon, climate, number of species, and regression statistics.

description: List of all elevational gradients used to test the diversity predictions of the Metabolic Theory of Ecology including locality, citation, taxon, climate, number of species, and regression statistics.
DOI: 10.6084/m9.figshare.3544346
title: Appendix B. Meta-regressions between ln species richness and 1/kT contrasting dry and wet elevational gradients for snakes, lizards, salamanders, and frogs.

description: Meta-regressions between ln species richness and 1/kT contrasting dry and wet elevational gradients for snakes, lizards, salamanders, and frogs.
DOI: 10.6084/m9.figshare.3544343
title: Appendix C. Multiple regression models and AIC values for the relationship of elevational diversity, abundance, and the MTE temperature.

description: Multiple regression models and AIC values for the relationship of elevational diversity, abundance, and the MTE temperature.
DOI: 10.6084/m9.figshare.3544340
title: Appendix A. Sin Nombre virus prevalence and total deer mice captured at 17 sites that differed in their degree of disturbance caused by off-road vehicles.

description: Sin Nombre virus prevalence and total deer mice captured at 17 sites that differed in their degree of disturbance caused by off-road vehicles.
DOI: 10.6084/m9.figshare.3544340.v1
title: Appendix A. Sin Nombre virus prevalence and total deer mice captured at 17 sites that differed in their degree of disturbance caused by off-road vehicles.

description: Sin Nombre virus prevalence and total deer mice captured at 17 sites that differed in their degree of disturbance caused by off-road vehicles.
DOI: 10.6084/m9.figshare.3544337
title: Appendix A. Methodology and results for state–space modeling of duck time series data.

description: Methodology and results for state–space modeling of duck time series data.
DOI: 10.6084/m9.figshare.3544334
title: Appendix B. Results from simulations assessing statistical power in detection of density dependence.

description: Results from simulations assessing statistical power in detection of density dependence.
DOI: 10.6084/m9.figshare.3544334.v1
title: Appendix B. Results from simulations assessing statistical power in detection of density dependence.

description: Results from simulations assessing statistical power in detection of density dependence.
DOI: 10.6084/m9.figshare.3544331
title: Appendix C. Population counts for 10 duck species in central North America.

description: Population counts for 10 duck species in central North America.
DOI: 10.6084/m9.figshare.3544331.v1
title: Appendix C. Population counts for 10 duck species in central North America.

description: Population counts for 10 duck species in central North America.
DOI: 10.6084/m9.figshare.3544328
title: Appendix D. Summary statistics for estimates of 10 duck species surveyed annually in central North America.

description: Summary statistics for estimates of 10 duck species surveyed annually in central North America.
DOI: 10.6084/m9.figshare.3544328.v1
title: Appendix D. Summary statistics for estimates of 10 duck species surveyed annually in central North America.

description: Summary statistics for estimates of 10 duck species surveyed annually in central North America.
DOI: 10.6084/m9.figshare.3544325
title: Appendix E. Parameter estimates for population growth models fit to time series for 10 duck species.

description: Parameter estimates for population growth models fit to time series for 10 duck species.
DOI: 10.6084/m9.figshare.3544325.v1
title: Appendix E. Parameter estimates for population growth models fit to time series for 10 duck species.

description: Parameter estimates for population growth models fit to time series for 10 duck species.
DOI: 10.6084/m9.figshare.3544322
title: Appendix F. AICc differences (Δi) and AICc weights (wi) for three growth models fit to population time series for 10 duck species.

description: AICc differences (Δi) and AICc weights (wi) for three growth models fit to population time series for 10 duck species.
DOI: 10.6084/m9.figshare.3544322.v1
title: Appendix F. AICc differences (Δi) and AICc weights (wi) for three growth models fit to population time series for 10 duck species.

description: AICc differences (Δi) and AICc weights (wi) for three growth models fit to population time series for 10 duck species.
DOI: 10.6084/m9.figshare.3544319
title: Appendix A. Additional methods and results of percent cover and volume determinations.

description: Additional methods and results of percent cover and volume determinations.
DOI: 10.6084/m9.figshare.3544319.v1
title: Appendix A. Additional methods and results of percent cover and volume determinations.

description: Additional methods and results of percent cover and volume determinations.
DOI: 10.6084/m9.figshare.3544316
title: Appendix B. Digital images depicting the transition of the base stage.

description: Digital images depicting the transition of the base stage.
DOI: 10.6084/m9.figshare.3544316.v1
title: Appendix B. Digital images depicting the transition of the base stage.

description: Digital images depicting the transition of the base stage.
DOI: 10.6084/m9.figshare.3544313
title: Appendix C. Additional methods of life table response analysis and results for site summary matrices.

description: Additional methods of life table response analysis and results for site summary matrices.
DOI: 10.6084/m9.figshare.3544313.v1
title: Appendix C. Additional methods of life table response analysis and results for site summary matrices.

description: Additional methods of life table response analysis and results for site summary matrices.
DOI: 10.6084/m9.figshare.3544310
title: Appendix D. A figure depicting the projected population structure under the conditions of A(03-06); and projections of the site summary matrices A(CR15), A(CR20), A(CR30), and A(PR15).

description: A figure depicting the projected population structure under the conditions of A(03-06); and projections of the site summary matrices A(CR15), A(CR20), A(CR30), and A(PR15).
DOI: 10.6084/m9.figshare.3544310.v1
title: Appendix D. A figure depicting the projected population structure under the conditions of A(03-06); and projections of the site summary matrices A(CR15), A(CR20), A(CR30), and A(PR15).

description: A figure depicting the projected population structure under the conditions of A(03-06); and projections of the site summary matrices A(CR15), A(CR20), A(CR30), and A(PR15).
DOI: 10.6084/m9.figshare.3544307
title: Appendix E. Additional methods of randomization tests and bootstrap calculations.

description: Additional methods of randomization tests and bootstrap calculations.
DOI: 10.6084/m9.figshare.3544307.v1
title: Appendix E. Additional methods of randomization tests and bootstrap calculations.

description: Additional methods of randomization tests and bootstrap calculations.
DOI: 10.6084/m9.figshare.3544304
title: Appendix F. Size-frequency distributions at each site in 2000, 2003, and 2006; and results of log-linear analysis of Conch Reef size-frequency data.

description: Size-frequency distributions at each site in 2000, 2003, and 2006; and results of log-linear analysis of Conch Reef size-frequency data.
DOI: 10.6084/m9.figshare.3544304.v1
title: Appendix F. Size-frequency distributions at each site in 2000, 2003, and 2006; and results of log-linear analysis of Conch Reef size-frequency data.

description: Size-frequency distributions at each site in 2000, 2003, and 2006; and results of log-linear analysis of Conch Reef size-frequency data.
DOI: 10.6084/m9.figshare.3544301
title: Appendix G. A figure depicting recruitment over time at study sites and a figure depicting the survival of yearly cohorts.

description: A figure depicting recruitment over time at study sites and a figure depicting the survival of yearly cohorts.
DOI: 10.6084/m9.figshare.3544301.v1
title: Appendix G. A figure depicting recruitment over time at study sites and a figure depicting the survival of yearly cohorts.

description: A figure depicting recruitment over time at study sites and a figure depicting the survival of yearly cohorts.
DOI: 10.6084/m9.figshare.3544298
title: Appendix H. A figure depicting mean mortality over time at the study sites.

description: A figure depicting mean mortality over time at the study sites.
DOI: 10.6084/m9.figshare.3544298.v1
title: Appendix H. A figure depicting mean mortality over time at the study sites.

description: A figure depicting mean mortality over time at the study sites.
DOI: 10.6084/m9.figshare.3544295
title: Appendix I. Site summary matrices A(CR15), A(CR20), A(CR30), and A(PR15) and additional results.

description: Site summary matrices A(CR15), A(CR20), A(CR30), and A(PR15) and additional results.
DOI: 10.6084/m9.figshare.3544292
title: Appendix J. Elasticity matrices of the Conch Reef summary matrices A(00-03) and A(03-06) and a figure depicting total elasticity for each size class.

description: Elasticity matrices of the Conch Reef summary matrices A(00-03) and A(03-06) and a figure depicting total elasticity for each size class.
DOI: 10.6084/m9.figshare.3544292.v1
title: Appendix J. Elasticity matrices of the Conch Reef summary matrices A(00-03) and A(03-06) and a figure depicting total elasticity for each size class.

description: Elasticity matrices of the Conch Reef summary matrices A(00-03) and A(03-06) and a figure depicting total elasticity for each size class.
DOI: 10.6084/m9.figshare.3544289
title: Appendix A. Photographs of the study site and of paedomorphic adult and young-of-the-year tiger salamanders.

description: Photographs of the study site and of paedomorphic adult and young-of-the-year tiger salamanders.
DOI: 10.6084/m9.figshare.3544289.v1
title: Appendix A. Photographs of the study site and of paedomorphic adult and young-of-the-year tiger salamanders.

description: Photographs of the study site and of paedomorphic adult and young-of-the-year tiger salamanders.
DOI: 10.6084/m9.figshare.3544286
title: Appendix B. Results of short-term microcosm experiments to determine the manner in which size affects the potential for inter-cohort cannibalism in tiger salamanders.

description: Results of short-term microcosm experiments to determine the manner in which size affects the potential for inter-cohort cannibalism in tiger salamanders.
DOI: 10.6084/m9.figshare.3544286.v1
title: Appendix B. Results of short-term microcosm experiments to determine the manner in which size affects the potential for inter-cohort cannibalism in tiger salamanders.

description: Results of short-term microcosm experiments to determine the manner in which size affects the potential for inter-cohort cannibalism in tiger salamanders.
DOI: 10.6084/m9.figshare.3544283
title: Appendix C. Statistical analyses of four nonconsumptive responses to the threat of cannibalism by tiger salamanders in mesocosm experiments.

description: Statistical analyses of four nonconsumptive responses to the threat of cannibalism by tiger salamanders in mesocosm experiments.
DOI: 10.6084/m9.figshare.3544283.v1
title: Appendix C. Statistical analyses of four nonconsumptive responses to the threat of cannibalism by tiger salamanders in mesocosm experiments.

description: Statistical analyses of four nonconsumptive responses to the threat of cannibalism by tiger salamanders in mesocosm experiments.
DOI: 10.6084/m9.figshare.3544280
title: Appendix D. Comparative dietary data of salamander cannibals and victims in mesocosms.

description: Comparative dietary data of salamander cannibals and victims in mesocosms.
DOI: 10.6084/m9.figshare.3544280.v1
title: Appendix D. Comparative dietary data of salamander cannibals and victims in mesocosms.

description: Comparative dietary data of salamander cannibals and victims in mesocosms.
DOI: 10.6084/m9.figshare.3544277
title: Appendix A. Validation of the comparability of visual and isotope methods for estimating gut passage time.

description: Validation of the comparability of visual and isotope methods for estimating gut passage time.
DOI: 10.6084/m9.figshare.3544277.v1
title: Appendix A. Validation of the comparability of visual and isotope methods for estimating gut passage time.

description: Validation of the comparability of visual and isotope methods for estimating gut passage time.
DOI: 10.6084/m9.figshare.3544274
title: Appendix A. A list of the studies included in our analysis.

description: A list of the studies included in our analysis.
DOI: 10.6084/m9.figshare.3544271
title: Appendix A. Intrinsic rate of population increase per day and generation times in days of ciliate and meiofaunal species from the Lone Oak stream and the Pant stream, grown in laboratory cultures.

description: Intrinsic rate of population increase per day and generation times in days of ciliate and meiofaunal species from the Lone Oak stream and the Pant stream, grown in laboratory cultures.
DOI: 10.6084/m9.figshare.3544271.v1
title: Appendix A. Intrinsic rate of population increase per day and generation times in days of ciliate and meiofaunal species from the Lone Oak stream and the Pant stream, grown in laboratory cultures.

description: Intrinsic rate of population increase per day and generation times in days of ciliate and meiofaunal species from the Lone Oak stream and the Pant stream, grown in laboratory cultures.
DOI: 10.6084/m9.figshare.3544268
title: Appendix A. Soil characteristics in different land use systems.

description: Soil characteristics in different land use systems.
DOI: 10.6084/m9.figshare.3544268.v1
title: Appendix A. Soil characteristics in different land use systems.

description: Soil characteristics in different land use systems.
DOI: 10.6084/m9.figshare.3544265
title: Appendix B. Fertilization applied in arable fields.

description: Fertilization applied in arable fields.
DOI: 10.6084/m9.figshare.3544262
title: Appendix C. Seasonal variation in soil biota abundances and functional groups.

description: Seasonal variation in soil biota abundances and functional groups.
DOI: 10.6084/m9.figshare.3544259
title: Appendix D. Soil biota abundances and microbial characteristics in different land use systems.

description: Soil biota abundances and microbial characteristics in different land use systems.
DOI: 10.6084/m9.figshare.3544259.v1
title: Appendix D. Soil biota abundances and microbial characteristics in different land use systems.

description: Soil biota abundances and microbial characteristics in different land use systems.
DOI: 10.6084/m9.figshare.3544256
title: Appendix E. Agricultural management effects on soil biota abundances and microbial characteristics.

description: Agricultural management effects on soil biota abundances and microbial characteristics.
DOI: 10.6084/m9.figshare.3544256.v1
title: Appendix E. Agricultural management effects on soil biota abundances and microbial characteristics.

description: Agricultural management effects on soil biota abundances and microbial characteristics.
DOI: 10.6084/m9.figshare.3544253
title: Appendix F. Agricultural management effects on earthworm trophic groups.

description: Agricultural management effects on earthworm trophic groups.
DOI: 10.6084/m9.figshare.3544253.v1
title: Appendix F. Agricultural management effects on earthworm trophic groups.

description: Agricultural management effects on earthworm trophic groups.
DOI: 10.6084/m9.figshare.3544250
title: Appendix G. Agricultural management effects on predatory mite trophic groups.

description: Agricultural management effects on predatory mite trophic groups.
DOI: 10.6084/m9.figshare.3544250.v1
title: Appendix G. Agricultural management effects on predatory mite trophic groups.

description: Agricultural management effects on predatory mite trophic groups.
DOI: 10.6084/m9.figshare.3544247
title: Appendix H. Land use change effects on nematode trophic groups.

description: Land use change effects on nematode trophic groups.
DOI: 10.6084/m9.figshare.3544247.v1
title: Appendix H. Land use change effects on nematode trophic groups.

description: Land use change effects on nematode trophic groups.
DOI: 10.6084/m9.figshare.3544241
title: Appendix I. Agricultural management effects on predatory mite life strategy groups.

description: Agricultural management effects on predatory mite life strategy groups.
DOI: 10.6084/m9.figshare.3544241.v1
title: Appendix I. Agricultural management effects on predatory mite life strategy groups.

description: Agricultural management effects on predatory mite life strategy groups.
DOI: 10.6084/m9.figshare.3544238
title: Appendix A. The interface between frozen and unfrozen peat landforms in a boreal permafrost peatland landscape.

description: The interface between frozen and unfrozen peat landforms in a boreal permafrost peatland landscape.
DOI: 10.6084/m9.figshare.3544238.v1
title: Appendix A. The interface between frozen and unfrozen peat landforms in a boreal permafrost peatland landscape.

description: The interface between frozen and unfrozen peat landforms in a boreal permafrost peatland landscape.
DOI: 10.6084/m9.figshare.3544235
title: Appendix B. Climate data for weather stations shown in Fig. 1c.

description: Climate data for weather stations shown in Fig. 1c.
DOI: 10.6084/m9.figshare.3544235.v1
title: Appendix B. Climate data for weather stations shown in Fig. 1c.

description: Climate data for weather stations shown in Fig. 1c.
DOI: 10.6084/m9.figshare.3544232
title: Appendix C. Mean annual water table depths from 1998 to 2002 used as a treatment in the seedling growth and seedling survival experiments.

description: Mean annual water table depths from 1998 to 2002 used as a treatment in the seedling growth and seedling survival experiments.
DOI: 10.6084/m9.figshare.3544232.v1
title: Appendix C. Mean annual water table depths from 1998 to 2002 used as a treatment in the seedling growth and seedling survival experiments.

description: Mean annual water table depths from 1998 to 2002 used as a treatment in the seedling growth and seedling survival experiments.
DOI: 10.6084/m9.figshare.3544229
title: Appendix D. Seed rain influx on permafrost plateaus and in collapse scars by year.

description: Seed rain influx on permafrost plateaus and in collapse scars by year.
DOI: 10.6084/m9.figshare.3544229.v1
title: Appendix D. Seed rain influx on permafrost plateaus and in collapse scars by year.

description: Seed rain influx on permafrost plateaus and in collapse scars by year.
DOI: 10.6084/m9.figshare.3544226
title: Appendix E. Parameter estimates for the parametric seedling survival model.

description: Parameter estimates for the parametric seedling survival model.
DOI: 10.6084/m9.figshare.3544223
title: Appendix F. Treatment combinations for the parametric seedling survival functions rank ordered by the median time to death (months).

description: Treatment combinations for the parametric seedling survival functions rank ordered by the median time to death (months).
DOI: 10.6084/m9.figshare.3544226.v1
title: Appendix E. Parameter estimates for the parametric seedling survival model.

description: Parameter estimates for the parametric seedling survival model.
DOI: 10.6084/m9.figshare.3544223.v1
title: Appendix F. Treatment combinations for the parametric seedling survival functions rank ordered by the median time to death (months).

description: Treatment combinations for the parametric seedling survival functions rank ordered by the median time to death (months).
DOI: 10.6084/m9.figshare.3544217
title: Appendix A. Path coefficients from structural equation modeling of relative fitness in Plantago lanceolata.

description: Path coefficients from structural equation modeling of relative fitness in Plantago lanceolata.
DOI: 10.6084/m9.figshare.3544217.v1
title: Appendix A. Path coefficients from structural equation modeling of relative fitness in Plantago lanceolata.

description: Path coefficients from structural equation modeling of relative fitness in Plantago lanceolata.
DOI: 10.6084/m9.figshare.3544214
title: Appendix A. Mean peak flowering dates and regression slopes for the 15 most common species with flowering periods overlapping that of Lathyrus.

description: Mean peak flowering dates and regression slopes for the 15 most common species with flowering periods overlapping that of Lathyrus.
DOI: 10.6084/m9.figshare.3544211
title: Appendix A. Photographs of Lavandula latifolia plants and the study plot.

description: Photographs of Lavandula latifolia plants and the study plot.
DOI: 10.6084/m9.figshare.3544211.v1
title: Appendix A. Photographs of Lavandula latifolia plants and the study plot.

description: Photographs of Lavandula latifolia plants and the study plot.
DOI: 10.6084/m9.figshare.3544208
title: Appendix B. Description of the individual-based stochastic model used to simulate frequency distributions of instantaneous and lifetime fecundities.

description: Description of the individual-based stochastic model used to simulate frequency distributions of instantaneous and lifetime fecundities.
DOI: 10.6084/m9.figshare.3544208.v1
title: Appendix B. Description of the individual-based stochastic model used to simulate frequency distributions of instantaneous and lifetime fecundities.

description: Description of the individual-based stochastic model used to simulate frequency distributions of instantaneous and lifetime fecundities.
DOI: 10.6084/m9.figshare.3544205
title: Appendix C. Yearly frequency distributions of annual fecundity (number of inflorescences produced each year) of simulated plants over a 23-year period.

description: Yearly frequency distributions of annual fecundity (number of inflorescences produced each year) of simulated plants over a 23-year period.
DOI: 10.6084/m9.figshare.3544205.v1
title: Appendix C. Yearly frequency distributions of annual fecundity (number of inflorescences produced each year) of simulated plants over a 23-year period.

description: Yearly frequency distributions of annual fecundity (number of inflorescences produced each year) of simulated plants over a 23-year period.
DOI: 10.6084/m9.figshare.3544202
title: Supplement 1. NetLogo program code used to simulate yearly and lifetime fecundity distributions of individual plants.

description: File List Model.Nlogo.txt -- source code file Description This program implements the simulation model described in Appendix B.
DOI: 10.6084/m9.figshare.3544199
title: Appendix A. A list of internal invader species.

description: A list of internal invader species.
DOI: 10.6084/m9.figshare.3544199.v1
title: Appendix A. A list of internal invader species.

description: A list of internal invader species.