cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.pnvx0k6jn
title: Pairwise FST values for Aedes aegypti populations in Florida and southern California

description: In the affiliated paper we compare likely the oldest populations of Aedes
 aegypti in continental North America with some of the newest to illuminate
 the range of genetic diversity and structure that can be found within the
 invasive range of this important disease vector. Aedes aegypti populations
 in Florida have likely persisted since the 1600-1700s, while populations
 in southern California derive from new invasions that occurred in the last
 ten years. For this comparison, we genotyped 1,193 individuals from 29
 sites at 12 highly variable microsatellites and a subset of these
 individuals at 23,961 single nucleotide polymorphisms (SNPs). This dataset
 contains the pairwise FST values generated with both genetic datasets.
description: We calculated pairwise genetic differentiation
 (F<sub>ST</sub>) for microsatellites in Genepop v. 1.1.4. and
 tested for significance using an exact conditional contingency-table test
 with the following parameters: 10,000 dememorizations, 500 batches, and
 10,000 iterations per batch. We calculated F<sub>ST</sub> for
 SNPs using the same method, and we used 1000 permutations to test for
 significance in Arlequin v. 3.5. For full descriptions
 of the genetic markers, see the affiliated manuscript or Dryad
 datasets.
description: The significance (p-values) are shown in the top right portion of
 the matrices, and the pairwise F<sub>ST</sub> values are shown
 in the bottom left portion. HS refers to highly significant. The second
 page of the microsatellite file contains a full list of the sites and
 their abbreviations.
DOI: 10.5061/dryad.gb5mkkwmt
title: Data from: A century of intermittent eco-evolutionary feedbacks resulted in novel trait combinations in invasive great lakes Alewives (Alosa pseudoharengus)

description: Species introductions provide opportunities to quantify rates and patterns
 of evolutionary change in response to novel environments. Alewives (Alosa
 pseudoharengus) are native to the East Coast of North America where they
 ascend coastal rivers to spawn in lakes, and then return to the ocean.
 Some populations have become landlocked within the last 350 years and
 diverged phenotypically from their ancestral marine population. More
 recently alewives were introduced to the Laurentian Great Lakes (~150
 years ago), but these populations have not been compared to East Coast
 anadromous and landlocked populations. We quantified 95 years of
 evolution in foraging traits and overall body shape of Great Lakes
 alewives and compared patterns of phenotypic evolution of Great Lakes
 alewives to East Coast anadromous and landlocked populations. Our results
 suggest that gill raker spacing in Great Lakes alewives has evolved in a
 dynamic pattern that is consistent with responses to strong but
 intermittent eco-evolutionary feedbacks with zooplankton size. Following
 their initial colonization of Lakes Ontario and Michigan, dense alewife
 populations likely depleted large-bodied zooplankton, which drove a
 decrease in alewife gill raker spacing. However, the introduction of
 large, non-native zooplankton to the Great Lakes in later decades resulted
 in an increase in gill raker spacing, and present-day Great Lakes alewives
 have gill raker spacing patterns that are similar to the ancestral East
 Coast anadromous population. Conversely, contemporary Great Lakes alewife
 populations possess a gape width consistent with East Coast landlocked
 populations. Body shape showed remarkable parallel evolution with East
 Coast landlocked populations, likely due to a shared response to the loss
 of long-distance movement or migrations. Our results suggest the
 colonization of a new environment and cessation of migration can result in
 rapid parallel evolution in some traits, but contingency also plays a
 role, and a dynamic ecosystem can also yield novel trait combinations.
description: Please refer to <strong>A Century of Intermittent
 Eco-Evolutionary Feedbacks Resulted in Novel Trait Combinations in
 Invasive Great Lakes Alewives (<em>Alosa
 pseudoharengus</em>) </strong>for information on the methods
 applied to data. Raw data for gill raker spacing, gape
 width, and body shape is available to download from Dryad.
DOI: 10.5061/dryad.cfxpnvx3h
title: Data from: Changes in ecosystem carbon stocks following grazing exclusion in arid and semiarid grasslands

description: Grazing exclusion (GE) is widely considered to be an important strategy
 for restoring overgrazed grasslands and promoting carbon (C) storage.
 However, the changes in the components of ecosystem C with GE and their
 related drivers remain largely unexplored. Here, we investigated the
 effects of GE on the ecosystem C components (plant and soil C) and their
 key driving factors through sampling inside and outside 15 grazing
 exclosures across the Inner Mongolia arid and semiarid grasslands in
 northern China. Our results showed that, except for dead root C, GE
 significantly promoted plant C stocks. The increase in AGB and litter C
 stocks resulted from the accumulation of both biomass and C concentration,
 while the increase in live root C stock was mainly attributed to biomass
 accumulation. In contrast, although the topsoil soil C concentration (0-20
 cm) showed a marginal increase following GE, its bulk density greatly
 declined, which resulted in little change in the soil C stocks. Overall,
 GE had no significant effect on total ecosystem C stocks. Our results
 further indicated that across the grasslands, GE likely enhanced C
 accumulation in live roots in humid and fertile sites, while it caused
 losses of dead root C in relatively humid and fertile sites and increases
 in arid and infertile sites. We also found that the increases in AGB C,
 litter C and live root C stocks were driven by the direct effects of GE
 and its indirect effects mediated by soil water content. The marginal
 increases in soil C concentration with GE were linked to only high soil
 water contents. Meta-analysis further revealed that across the grasslands
 of China, the responses of ecosystem C components to GE were associated
 with changes in soil water conditions, suggesting the generality of soil
 water effects at the national scale. Overall, our results showed that
 across arid and semiarid grasslands, GE is generally beneficial for plant
 C accumulation but has little effect on soil C stocks. Importantly, our
 study highlighted the important role of soil water in regulating ecosystem
 C dynamics with GE across the grasslands of China.
DOI: 10.5061/dryad.jsxksn06n
title: The dataset of the BCZT ceramic characterizations

description: All original data used in figures and tables of the manuscript are
 available in the dataset, which includes the XRD, variable temperature
 dielectric, room temperature frequency spectrum and ferroelectric
 performance measurements.A sol-gel method is employed for preparing high
 quality lead-free glass-ceramic samples (1-x) BCZT-x BBS – incorporating
 Ba0.85Ca0.15Zr0.1Ti0.9O3 (BCZT) powder and Bi2O3-B2O3-SiO2 (BBS) glass
 doped additives with different values of x (x = 0, 0.05, 0.1, 0.15). With
 the increase of BBS content, the polarization degree gradually decreases,
 but the breakdown electric field intensity first increases and then
 decreases, reaching the maximum value of 141 kV/cm when x =0.1. The energy
 storage density is calculated according to the electric field and
 polarization intensity. The maximum energy storage density reaches 0.3907
 Jcm-3 at electric field of 130 kV/cm as x value is 0.05.
description: These data are
 derived directly from the test instruments and equipment. These data can
 be processed directly or indirectly to obtain the data in transit. Data
 such as X-ray diffraction (XRD), dielectric constant, frequency spectrum,
 temperature spectrum, and ferroelectric can be processed directly to
 produce graphs. Energy storage density and energy storage efficiency need
 to be calculated by the following formula:<i>W<sub>dis</sub></i><sub>charge</sub>= <i>Pr</i> <i>Pmax</i> <i>EdP</i>  ; energy storage efficiency=<i> W</i><sub>discharge</sub><i> /W</i><sub>charge</sub>×100%.
DOI: 10.5281/zenodo.16497047
title: CESM2 data for "Defining Scales of Field Experiments to Assess Solar Radiation Modification, with Application to Marine Cloud Brightening Studies"

description: Single grid-point data extracted from point emission marine cloud brightening simulations in CESM2. Dataset includes montly variables extracted for each emission box and an upwind "control" location. Jupyter notebook includes code required to reproduce article figures using the extracted grid-point data. Full model output available from Amazon S3 upon request.
DOI: 10.5281/zenodo.16497046
title: CESM2 data for "Defining Scales of Field Experiments to Assess Solar Radiation Modification, with Application to Marine Cloud Brightening Studies"

description: Single grid-point data extracted from point emission marine cloud brightening simulations in CESM2. Dataset includes montly variables extracted for each emission box and an upwind "control" location. Jupyter notebook includes code required to reproduce article figures using the extracted grid-point data. Full model output available from Amazon S3 upon request.
DOI: 10.5061/dryad.2jm63xsm7
title: Data from: Carnivorous mammals from the middle Eocene Washakie Formation, Wyoming, USA, and their diversity trajectory in a post-warming world

description: The middle Eocene Washakie Formation of Wyoming, USA, provides a rare
 window, within a single depositional basin, into the faunal transition
 that followed the early Eocene warming events. Based on extensive
 examination, we report a minimum of 27 species of carnivorous mammals from
 this formation, more than doubling the previous taxic count. Included in
 this revised list are a new species of carnivoraform, Neovulpavus
 mccarrolli, and up to ten other possibly new taxa. Our cladistic analysis
 of early Carnivoraformes incorporating new data clarified the array of
 middle Eocene taxa that are closely related to crown-group Carnivora.
 These anatomically relatively derived carnivoraforms collectively had an
 intercontinental distribution in North America and east Asia, exhibiting
 notable variations in body size and dental adaptation. This time period
 also saw parallel trends of increase in body-size and dental sectoriality
 in distantly-related lineages of carnivores spanning a wide range of body
 sizes. A new, model-based Bayesian analysis of diversity dynamics
 accounting for imperfect detection revealed a high probability of
 substantial loss of carnivore species between the late Bridgerian and
 early Uintan North American Land Mammal ‘Ages’, coinciding with the
 disappearance of formerly common mammals such as hyopsodontids and
 adapiform primates. Concomitant with this decline in carnivore diversity,
 the Washakie vertebrate fauna underwent significant disintegration as
 measured by patterns of coordinated detection of taxa at the locality
 level. These observations are consistent with a major biomic transition in
 the region in response to climatically-induced opening-up of forested
 habitats.
description: This dataset was compiled by the authors as described in the
 paper, and contains the following: Supplemental Data 1
 (SupData1_Rscripts_v2020_07_04 for Dryad.rtf). R scripts for: (1) Bayesian
 hierarchical multispecies occupancy-detection modeling; (2) model
 selection using reversible-jump Markov chain Monte Carlo method; and (3)
 analysis of vertebrate co-detection patterns.
 Supplemental Data 2 (SupData2_character_matrix_and_trees.nex).
 NEXUS file containing morphological character matrix for cladistic
 analysis of early Carnivoraformes, most parsimonious trees obtained, and
 strict consensus tree. Supplemental Data 3
 (SupData3_vertebrate_occurrences_selectedlocs_v2019_11_10_forshare.csv).
 List of cataloged specimens of vertebrate fossils from the Washakie
 Formation, Wyoming, U.S.A., housed at the Field Museum of Natural History
 (FMNH; Chicago, U.S.A.) and included in analysis of vertebrate
 co-detection patterns. Supplemental Data 4
 (SupData4_localities_v2019_11_08.csv). List of FMNH localities and their
 attributes analyzed by occupancy-detection modeling.
 Supplemental Data 5
 (SupData5_carnivore_detections_by_locs_v2019_11_10.csv). Matrix of
 carnivore detections across FMNH localities analyzed by
 occupancy-detection modeling.
DOI: 10.7280/d1738j
title: Data from: Size-resolved chemical composition of sub-20 nm particles from methanesulfonic acid reactions with methylamine and ammonia

description: Particle formation in the atmosphere from gas-phase precursors has been
 observed around the world; however, our fundamental understanding of the
 key species responsible and mechanisms involved remains uncertain.
  Recent laboratory studies demonstrated that acid−base reactions
 involving methanesulfonic acid (CH3SO3H, MSA) and small alkylamines may
 contribute significantly to new particle formation.  To date,
 most of the investigations have been focused on particle number
 concentration and size distribution measurements in combination with
 quantum chemistry predictions of the most stable clusters.  Here,
 we present the first measurements of the size-resolved chemical
 composition of sub-20 nm particles generated in a custom flow reactor from
 the reaction of MSA with methylamine (MA) in the presence or absence of
 NH3 using thermal desorption chemical ionization mass spectrometry
 (TDCIMS).  A novel design of the TDCIMS inlet was evaluated, and
 the measurement of the chemical composition of particles was extended down
 to 5 nm in diameter, the smallest size yet reported for this method.
  MSA−MA particles with diameters smaller than 9 nm were found to
 be more acidic, with an acid/base molar ratio of 1.8 ± 0.4 (1σ) for 5 nm
 particles compared to the larger particles which were neutral.  A
 similar acid/base molar ratio trend was observed when NH3 was added to the
 MSA−MA combination.  In the MSA−MA−NH3 system, the MA/NH3 molar
 ratio was higher than 1 (up to 2.6) for all particle sizes despite the
 much larger concentration of NH3 in the gas phase (the gas-phase MA/NH3
 ratio was ∼0.23), indicating that MA is a key component in particle
 formation from this system.  The potential reasons for this based
 on previous calculations of small clusters in this system are discussed.
description: The interested reader is referred to the following article for
 details about the experiments performed here:  V.
 Perraud, X. Li, J. Jiang, B. J. Finlayson-Pitts and J. N. Smith,
 Size-resolved chemical composition of sub-20 nm particles from
 methanesulfonic acid reactions with methylamine and ammonia, ACS Earth and
 Space Chem., https://dx.doi.org/10.1021/acsearthspacechem.0c00120 (2020)
 .
description: These tables contained processed data that are plotted and
 tabulated in the manuscript referred to above.  Data are presented in
 excel spreadsheets format.  Additional questions and requests for other
 processed data associated with the article can be directed to James Smith
 (jimsmith@uci.edu) or Barbara Finlayson-Pitts (bjfinlay@uci.edu)
DOI: 10.5061/dryad.gxd2547j4
title: A global phylogenomic study of the Thelypteridaceae

description: The generic classification of the Thelypteridaceae has been the subject of
 much controversy. Proposed taxonomic systems have varied from recognizing
 more than 1000 species in the family within the single genus Thelypteris,
 to systems favoring upwards of 30 genera. Insights on intrafamilial
 relationships have been gained from recent phylogenetic studies,
 especially for the Neotropics; however, in the most recent classification,
 10 of 30 recognized genera are either non-monophyletic or untested. In the
 present study, we sequenced 407 nuclear loci for 621 samples, representing
 all recognized genera and approximately half the known species diversity.
 Our phylogenomic results, coupled with morphological study, provide a
 foundation for a new generic classification. Our recently recognized
 monophyletic genera demonstrate greater geographic coherence than previous
 taxonomic concepts suggested. Additionally, our results demonstrate that
 certain morphological characters, such as frond division, are
 evolutionarily labile, and are thus inadequate for defining genera.
description: These data include an 407-locus alignment file, a partition file,
 a maximum likelihood phylogeny annotated with ultrafast bootstrap support
 values, gene- and site concordance factors created in IQ-Tree, and a
 pseudocoalescent tree created in ASTRAL, annotated with local posterior
 probabilities. A spreadsheet includes specimen data for the 621 vouchers
 used in the phylogenomic analysis of the Thelypteridaceae, and pipeline
 and post-processing scripts. The data were generated by the GoFlag
 Consortium. GoFlag (Genealogy of Flagellate Plants) is an NSF-funded
 project (DEB 1541506) based at the University of Florida, Field Museum,
 and University of Arizona. Project personnel include (at UF): J. Gordon
 Burleigh, Emily Sessa, Stuart McDaniel, Christine Davis, Pavlo Antonenko,
 Sarah Carey, Lorena Endara, Weston Testo; (at Field): Matt von Konrat, Eve
 Gaus; (at UA): Hong Cui. 
description: Please see Breinholt et al. 2020 for more detailed methods. The
 raw reads are available on the NCBI Sequence Read Archive Bioproject
 646399. The trees are easily viewed using FigTree, and the alignment and
 partition file are formatted to use with IQ-Tree, ASTRAL or other similar
 software. The supplementary methods folder contains ReadMe files and
 scripts.
DOI: 10.5061/dryad.44j0zpcbs
title: Data from: Palaeobiogeography of the north pacific toothed mysticetes (Cetacea, Aetiocetidae): a key to Oligocene cetacean distributional patterns

description: Biogeographical distributional patterns of cetaceans reflect dispersal
 events and colonization of the oceans from their ancestral area in the
 ancient Sea of Tethys ~53 Ma. Likewise, they shows several vicariance
 events throughout the evolutionary history of this group. However, our
 understanding of how these processes took place and what biogeographical
 scenarios occurred among the different groups of cetaceans through time,
 is limited. Consequently, this work focuses on explaining the
 distributional patterns of the well-known North Pacific toothed
 mysticetes, Aetiocetidae, through the power of retrodiction offered by
 track analysis (panbiogeography) and cladistic biogeography, using the
 approach of evolutionary biogeography. Our results show that the
 distributional patterns of Aetiocetidae explain their endemism in the
 North Pacific, as well as indicate that their hypothetical ancestor
 probably colonized the Pacific from the Atlantic Ocean by a dispersal
 event (founder effect) via the Central American Seaway. Furthermore, their
 biogeographic history shows the adaptive radiation (cladogenesis) of
 Aetiocetidae as result of peripatric speciation followed by sympatric
 speciation within a heterogeneous environment. Finally, the biogeographic
 framework of Aetiocetidae further supports the relevant role that the
 Pacific Ocean has played in the evolution of Oligocene cetaceans as a
 geographic area that promoted endemism, dispersal, and colonization. While
 at more local scales, environmental conditions further promoted increased
 diversity and disparity amongst Mysticeti.
DOI: 10.5061/dryad.zs7h44j68
title: Biomass material - undulating venus shell - supported nanoscale zero-valent iron for the adsorption of Pb2+ and Cd2+ ions in aqueous solution

description: Nanoscale zero-valent iron (NZVI) has a high adsorption capacity for heavy
 metals, but easily forms aggregates. Herein, preprocessed undulating venus
 shell (UVS) is used as support material to prevent NZVI from reuniting.
 The SEM and TEM results show that UVS had a porous layered structure and
 NZVI particles were evenly distributed on the UVS surface. A large number
 of adsorption sites on the surface of UVS-NZVI are conﬁrmed by IR and XRD.
 UVS-NZVI is utilized for adsorption of Pb2+ and Cd2+ at pH=6 in aqueous
 solution, and the experimental maximum adsorption capacities are 29.91
 mg·g-1 and 38.99 mg·g-1, respectively. Adsorption isotherm results
 indicate that the adsorption of ions by UVS-NZVI is more in line with the
 Langmuir model when Pb2+ or Cd2+ existed alone. For the mixed solution of
 Pb2+ and Cd2+, only the adsorption of Pb2+ by UVS-NZVI conforms to the
 Langmuir model. Kinetic studies demonstrate that the determination
 coefficients (R2) of the pseudo first-order kinetic model for UVS-NZVI
 adsorption of Cd2+ and Pb2+ are higher than those of the pseudo
 second-order kinetic model and Elovich kinetic model. Highly efficient
 performance for metal removal makes UVS-NZVI show potential application to
 heavy metal ion adsorption.
DOI: 10.15468/dl.jfe2ns
title: Occurrence Download

description: A dataset containing 20 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.countrycode = 'RO'
 AND occurrence.datasetkey IN ('50c9509d-22c7-4a22-a47d-8c48425ef4a7', '8a863029-f435-446a-821e-275f4f641165')
 AND occurrence.hascoordinate = TRUE
 AND occurrence.hasgeospatialissues = FALSE
 AND occurrence.occurrencestatus = 'PRESENT'
 AND GBIF_STRINGARRAYCONTAINS(occurrence.classifications['d7dddbf4-2cf0-4f39-9b2a-bb099caae36c'], '2423435', TRUE)
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND (occurrence.classificationdetails['d7dddbf4-2cf0-4f39-9b2a-bb099caae36c']['specieskey'] &lt;&gt; '' AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 20 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002424-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.