cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3641021_d16
title: Additional file 7: of De novo assembly and transcriptome analysis of Plasmodium gallinaceum identifies the Rh5 interacting protein (ripr), and reveals a lack of EBL and RH gene family diversification

description: Annotation file for the assembly without quality trimming.
DOI: 10.6084/m9.figshare.c.3641036_d4
title: Additional file 5: of Recent and dynamic transposable elements contribute to genomic divergence under asexuality

description: Number of clusters, genomic abundance and proportions of most abundant transposable elements classified according to Wicker et al. [1] in the five accessions of T. officinale apomictic lineage. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3641036_d5
title: Additional file 3: of Recent and dynamic transposable elements contribute to genomic divergence under asexuality

description: Intra-family heterogeneity of most abundant TE families in the genomes of the five accessions of T. officinale. Number of clusters are presented for each model described in the method section. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3641036_d6
title: Additional file 4: of Recent and dynamic transposable elements contribute to genomic divergence under asexuality

description: Statistical analyses of the relative abundance of TE classes between accessions, as estimated by read counts, at three hierarchical levels of annotation (Likelihood Ratio Chi-square test). (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3641186_d3
title: Additional file 5: Table S2. of Shadowed by scale: subtle behavioral niche partitioning in two sympatric, tropical breeding albatross species

description: Effects of species, astronomical state and their interaction on movement parameters (Parameters coefficient ± SD). (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3641210_d2
title: MOESM2 of Fine-tuning of chromatin composition and Polycomb recruitment by two Mi2 homologues during C. elegans early embryonic development

description: Additional file 2. RNA-Seq deregulated genes. Processed lists of deregulated genes in the indicated genotypes versus control are displayed below. A threshold of 1.5 log2 fold change and a p value &lt;10 % were applied. let-418: wild-type; let-418(RNAi)-treated embryos; chd-3: chd-3(eh4); controlGFP(RNAi)-treated embryos; chd-3_let-418: chd-3(eh4); let-418(RNAi)-treated embryos. All fold changes are calculated versus wild-type; control(RNAi)-treated embryos. _1 h and _3 h correspond to the 24- and 100-cell stages, respectively.
DOI: 10.6084/m9.figshare.c.3641486_d1
title: Additional file 2: Table S1. of Kaiso mediates human ICR1 methylation maintenance and H19 transcriptional fine regulation

description: Influence of Kaiso on other ICRs. Other ICRs than the ICR1 based on (Court et al. [43]) on different chromosomes were analysed for the presence of KBS and their number listed. In addition, the presence of ZPF57 target sites (ZFP57TS) was analysed (Y = yes, N = no) as well as the Kaiso knockdown effect on the methylation of the DMR and the transcription of flanking imprinted genes of the respective ICRs (n.d. = not determined, NO = no change observed, UP = upregulated, DOWN = downregulated). (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3641501_d1
title: Additional file 4: of Repeated measures of inflammation, blood pressure, and heart rate variability associated with traffic exposures in healthy adults

description: Slopes (95 % Confidence Intervals) generated from mixed effect models between percent changes in pollutant concentrations and health effects for the subjects, adjusting for apparent temperature, location, and random subject effects. Analysis was completed removing 2 subject that presented with BMI &gt; 39. Percent change were calculated between the pre-exposure measurement and each subsequent measurement (i.e. post or 24 h post).
DOI: 10.6084/m9.figshare.28028267
title: From pet to wildlife_Data

description: Data collected for "From pet to wildlife".
DOI: 10.6084/m9.figshare.28028267.v1
title: From pet to wildlife_Data

description: Data collected for "From pet to wildlife".
DOI: 10.6084/m9.figshare.c.3641501_d3
title: Additional file 1: of Repeated measures of inflammation, blood pressure, and heart rate variability associated with traffic exposures in healthy adults

description: Additionally measured exposure metrics at each location. Values represent means ± SD. Traffic volume data for the GSP were obtained for the Essex Toll Plaza using the New Jersey Turnpike Authority’s Open Public Records Act. Traffic volume data at the GWB were obtained for the GWB upper level and Palisades Interstate Parkway toll records from the PANYNJ. No traffic was observed at SF, as verified by study staff during exposures. SF = Sterling Forest; GSP = Garden State Parkway; GWB = George Washington Bridge. N/A = not applicable. aUnpaired t-test. bOnly a single measurement of noise was made at SF. Noise levels at SF without sampler on were below detection limit for instrument (dB
DOI: 10.6084/m9.figshare.c.3641501_d4
title: Additional file 3: of Repeated measures of inflammation, blood pressure, and heart rate variability associated with traffic exposures in healthy adults

description: Slopes (95Â % Confidence Intervals) generated from mixed effect models between percent changes in pollutant concentrations and health effects for the subjects, adjusting for apparent temperature, location, and random subject effects. Percent change were calculated between the pre-exposure measurement and each subsequent measurement (i.e. post or 24Â h post).
DOI: 10.6084/m9.figshare.c.3641513_d1
title: Additional file 4: Table S4. of Gastric bypass surgery reveals independency of obesity and diabetes melitus type 2

description: Komogorov-Smirnoff test for equality of distributions of traits. Traits are pair-wise tested for distributional similarity of the time-evolving changes in trait values (trajectories), that is to which extent the traits may be correlated. The comparisons of distributions are done for all subpopulations and gender separately. (XLS 22 kb)
DOI: 10.6084/m9.figshare.c.3641513_d2
title: Additional file 2: Table S2. of Gastric bypass surgery reveals independency of obesity and diabetes melitus type 2

description: Maximal changes in glucose-related variables. Values and summary statistics for glucose-related variables and diabetes for both gender combined. An excerpt of the table of the central variables related to diabetes is presented in TableÂ 2. (XLS 48 kb)
DOI: 10.6084/m9.figshare.c.3641513_d3
title: Additional file 6: Table S6. of Gastric bypass surgery reveals independency of obesity and diabetes melitus type 2

description: Clustering summary using the scikit k-means procedure. The three subpopulations non-diabetics, diabetics turned non-diabetics and diabetics staying diabetics after gastric bypass were partitioned into subpopulations using the k-mean procedure for changes in body mass index (BMI) during time. In all, at least 11 subpopulations were identified. (XLS 21 kb)
DOI: 10.6084/m9.figshare.c.3641513_d4
title: Additional file 1: Table S1. of Gastric bypass surgery reveals independency of obesity and diabetes melitus type 2

description: Maximal changes in variables and the day after RYGB. Values and summary statistics of all variables analysed before and after gastric bypass for the subpopulations non-diabetics, diabetics turned non-diabetics post-surgery and diabetics that stayed diabetics post-surgery. Values and statistics are given for female and males, respectively. (XLS 226 kb)
DOI: 10.3886/e212241
title: Data and Code for "World War II Service and the GI Bill: New Evidence on Selection and Veterans’ Outcomes from Linked Census Records"

description: This package provides code and instructions to replicate the analysis of "World War II Service and the GI Bill: New Evidence on Selection and Veterans’ Outcomes from Linked Census Records."
DOI: 10.3886/e212241v1-161501
title: Data and Code for "World War II Service and the GI Bill: New Evidence on Selection and Veterans’ Outcomes from Linked Census Records"

description: This package provides code and instructions to replicate the analysis of "World War II Service and the GI Bill: New Evidence on Selection and Veterans’ Outcomes from Linked Census Records."
DOI: 10.6084/m9.figshare.c.3641753_d5
title: Additional file 6: Table S3 of The transcriptional and splicing landscape of intestinal organoids undergoing nutrient starvation or endoplasmic reticulum stress

description: Alternative splicing events in murine enteroids upon either ER stress or nutrient starvation. (XLSX 933Â kb)
DOI: 10.6084/m9.figshare.c.3641753_d6
title: Additional file 2: Table S2 of The transcriptional and splicing landscape of intestinal organoids undergoing nutrient starvation or endoplasmic reticulum stress

description: Analysis of expression patterns of various genes upregulated or downregulated during metabolic stress, including those associated with metabolism and innate immunity. (XLS 60Â kb)
DOI: 10.6084/m9.figshare.c.3641753_d9
title: Additional file 1: Table S1 of The transcriptional and splicing landscape of intestinal organoids undergoing nutrient starvation or endoplasmic reticulum stress

description: cFPKM values for the global analysis of gene expression in murine enteroids upon either ER stress or nutrient starvation. (XLSX 5705Â kb)
DOI: 10.6084/m9.figshare.c.3641765_d2
title: Additional file 2: Table S1. of Abdominal fat depots associated with insulin resistance and metabolic syndrome risk factors in black African young adults

description: Pearsonâ  s correlation coefficients (P-values) between body fat parameters and individual metabolic traits in men. (XLS 11Â kb)
DOI: 10.6084/m9.figshare.c.3641765_d3
title: Additional file 3: Table S2. of Abdominal fat depots associated with insulin resistance and metabolic syndrome risk factors in black African young adults

description: Pearsonâ  s correlation coefficients (P-values) between body fat parameters and individual metabolic traits in women. (XLS 11Â kb)
DOI: 10.6084/m9.figshare.c.3641912_d1
title: MOESM3 of Presenilin 1 transgene addition to amyloid precursor protein overexpressing transgenic rats increases amyloid beta 42 levels and results in loss of memory retention

description: Additional file 3: TableÂ 3. contains dataset for Barnes maze (see Fig.Â 4). The table includes acquisition day 1, 2 and 3 latency and errors and their averages, retention latency and errors and reversal days 1, 2 and 3 latency and errors and their averages.
DOI: 10.6084/m9.figshare.c.3641912_d2
title: MOESM1 of Presenilin 1 transgene addition to amyloid precursor protein overexpressing transgenic rats increases amyloid beta 42 levels and results in loss of memory retention

description: Additional file 1: TableÂ 1. contains dataset for Northern blot analysis (see Fig.Â 2). PS1 mRNA level, serum AÎ˛42 and tissue are reported in the table.
DOI: 10.6084/m9.figshare.c.3641912_d3
title: MOESM2 of Presenilin 1 transgene addition to amyloid precursor protein overexpressing transgenic rats increases amyloid beta 42 levels and results in loss of memory retention

description: Additional file 2: Table 2. contains dataset for serum Aβ42, Aβ40 and Aβ42/Aβ40 ratio of F1 and F2 generation transgenic rats (see Fig. 3).
DOI: 10.6084/m9.figshare.c.3641936_d1
title: Additional file 1: Table S1. of Genetic diversity trend in Indian rice varieties: an analysis using SSR markers

description: List of rice varieties characterized using HvSSR markers along with their pedigree, IC number, year of release and traits. (XLSX 79Â kb)
DOI: 10.6084/m9.figshare.c.3641936_d3
title: Additional file 2: Table S2. of Genetic diversity trend in Indian rice varieties: an analysis using SSR markers

description: List of hybrid rice used in the present study with year of release and pedigree. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3641942_d2
title: Additional file 5: Table S2. of MAPK signaling is necessary for neurogenesis in Nematostella vectensis

description: Array data for NvsoxB(2), Nvnotch, Nvdelta, and neural genes used for transgenes or controls in qPCR experiments. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3641942_d5
title: Additional file 15: Table S7. of MAPK signaling is necessary for neurogenesis in Nematostella vectensis

description: Primer pairs used in this study for gene cloning. (XLS 73 kb)
DOI: 10.6084/m9.figshare.c.3642182_d1
title: Additional file 4: of Origin and higher-level diversification of acariform mites – evidence from nuclear ribosomal genes, extensive taxon sampling, and secondary structure alignment

description: Trees obtained in analyses using different partitions and nucleotide models; Internode certainty measures for 3- and 2-partition phylogenetic analyses. A-F: Tree topologies for analyses combining stem and loop regions, all data partitions, and assigning 6A and 7A models for stem and GTR + I + G models for loops. Bootstrap proportion values are given for each node. G: For each node, Internode Certainty (IC) and Internode Certainty All (ICA) indices are shown on ML trees inferred from stem and loop (A) or all regions (B). IC is followed by ICA. (RAR 368 kb)
DOI: 10.6084/m9.figshare.c.3642182_d2
title: Additional file 5: of Origin and higher-level diversification of acariform mites â   evidence from nuclear ribosomal genes, extensive taxon sampling, and secondary structure alignment

description: R script for the Bayesian Relative Rates test. This script implements a Bayesian Relative Rates Test [116], i.e. sums of the branch lengths from a node ancestral to the node of interest and its tips for postburnin trees sampled from the posterior. It provides an estimate of the mean, 95Â % credible interval, maximum and minimum values for each terminal. (R 6Â kb)
DOI: 10.6084/m9.figshare.c.3642182_d5
title: Additional file 1: of Origin and higher-level diversification of acariform mites – evidence from nuclear ribosomal genes, extensive taxon sampling, and secondary structure alignment

description: Sampling data and taxonomy. Systematic classification of terminals and GenBank accession numbers for sequences and collection information for newly sequenced species and their accession numbers in the CT-UFMG (Coleção taxonômica da Universidade Federal de Minas Gerais) and MZSP (Museu de Zoologia da Universidade de São Paulo). (RAR 93 kb)
DOI: 10.6084/m9.figshare.c.3642182_d3
title: Additional file 3: of Origin and higher-level diversification of acariform mites â   evidence from nuclear ribosomal genes, extensive taxon sampling, and secondary structure alignment

description: Assessing convergence of MCMC analyses. Plots of LnL of the stationary phase of the Bayesian analyses and ESS values for parameter estimates. (RAR 600Â kb)
DOI: 10.6084/m9.figshare.c.3642182_d4
title: Additional file 2: of Origin and higher-level diversification of acariform mites – evidence from nuclear ribosomal genes, extensive taxon sampling, and secondary structure alignment

description: Secondary structure alignments. A-B: Two FASTA files containing consensus secondary structure alignments of the 18S and 28S genes. Secondary structure notations masks: brackets “()”, “{}”, and “&lt; &gt;“ indicate paired sites; dots “.” indicate unpaired sites, and asterisks “*” indicate regions of ambiguous alignment (RAAs). Notations for stems and variable regions follow [91] and [92, 93] for the SSU variable region 4 (V4). Length variation for each RAAs is also given separately. (RAR 211 kb)
DOI: 10.6084/m9.figshare.c.3642185_d1
title: MOESM1 of In the belly of the beast: resolving stomach tag data to link temperature, acceleration and feeding in white sharks (Carcharodon carcharias)

description: Additional file 1. Jorgensen2015_AI1_time_window.m. Matlab routine for analyzing depth time series to determine time window over which average body position is prone relative to earthâ  s gravity. It requires some user inputs for specific values unique to individual datasets and computer pathways. This file can be viewed by an text editor, and run in Matlab.
DOI: 10.6084/m9.figshare.c.3642185_d4
title: MOESM7 of In the belly of the beast: resolving stomach tag data to link temperature, acceleration and feeding in white sharks (Carcharodon carcharias)

description: Additional file 7. rotz3.m. Matlab function for three dimensional coordinate transformation called out from Jorgensen2015_AI3_maximize_tailbeat.m. This file can be viewed by an text editor, and run in Matlab.
DOI: 10.6084/m9.figshare.c.3642185_d2
title: MOESM4 of In the belly of the beast: resolving stomach tag data to link temperature, acceleration and feeding in white sharks (Carcharodon carcharias)

description: Additional file 4. fft_rot.m. Matlab function for fast fourier analysis called out from Jorgensen2015_AI3_maximize_tailbeat.m. This file can be viewed by an text editor, and run in Matlab.
DOI: 10.6084/m9.figshare.c.3642185_d3
title: MOESM2 of In the belly of the beast: resolving stomach tag data to link temperature, acceleration and feeding in white sharks (Carcharodon carcharias)

description: Additional file 2. Jorgensen2015_AI2_find_up.m. Matlab routine for transforming X, Y, Z acceleration data to orient Z axis vertically with respect to earthâ  s gravity. Requires definition of time window for parsing data based on results in Jorgensen2015_AI1_time_window.m. This file can be viewed by an text editor, and run in Matlab.
DOI: 10.6084/m9.figshare.c.3642185_d5
title: MOESM5 of In the belly of the beast: resolving stomach tag data to link temperature, acceleration and feeding in white sharks (Carcharodon carcharias)

description: Additional file 5. roty3.m. Matlab function for three dimensional coordinate transformation called out from Jorgensen2015_AI3_maximize_tailbeat.m. This file can be viewed by an text editor, and run in Matlab.
DOI: 10.6084/m9.figshare.c.3642185_d6
title: MOESM3 of In the belly of the beast: resolving stomach tag data to link temperature, acceleration and feeding in white sharks (Carcharodon carcharias)

description: Additional file 3. Jorgensen2015_AI3_maximize_tailbeat.m. Matlab routine for transforming X, Y, Z acceleration data to orient Y axis perpendicular a swimming sharkâ  s prone body (and perpendicular to earthâ  s gravity) by aligning Y axis parallel with maximum swaying acceleration. Requires X, Y, Z data transformed from Jorgensen2015_AI2_find_up.m. This file can be viewed by an text editor, and run in Matlab.
DOI: 10.6084/m9.figshare.c.3642185_d7
title: MOESM6 of In the belly of the beast: resolving stomach tag data to link temperature, acceleration and feeding in white sharks (Carcharodon carcharias)

description: Additional file 6. rotx3.m. Matlab function for three dimensional coordinate transformation called out from Jorgensen2015_AI3_maximize_tailbeat.m. This file can be viewed by an text editor, and run in Matlab. ***Additional file 7 â   rotz3.m. Matlab function for three dimensional coordinate transformation called out from Jorgensen2015_AI3_maximize_tailbeat.m. This file can be viewed by an text editor, and run in Matlab.
DOI: 10.6084/m9.figshare.c.3642188_d1
title: Additional file 2: of Monitoring the impact of a national school based deworming programme on soil-transmitted helminths in Kenya: the first three years, 2012 â   2014

description: School-level datasets from each of the survey rounds. Dataset1_02072016. (XLSX 84 kb)
DOI: 10.6084/m9.figshare.c.3642272_d1
title: Additional file 3: of The quality of feedback during formative OSCEs depends on the tutorsâ   profile

description: Contains the data about the tutorsâ   sociodemographic data, clinical and teaching experience. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3642272_d3
title: Additional file 2: of The quality of feedback during formative OSCEs depends on the tutorsâ   profile

description: Contains the data about the quality of the feedback perceived by the students. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3642272_d2
title: Additional file 1: of The quality of feedback during formative OSCEs depends on the tutorsâ   profile

description: Codes and definition of codes. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3642272_d4
title: Additional file 4: of The quality of feedback during formative OSCEs depends on the tutorsâ   profile

description: Contains the data about the objective analysis of the quality of the feedback. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3642281_d5
title: Additional file 4: Table S5. of Gene expression meta-analysis reveals immune response convergence on the IFNÎł-STAT1-IRF1 axis and adaptive immune resistance mechanisms in lymphoma

description: Lists of correlated genes for selected focus genes. (XLSX 16708 kb)
DOI: 10.6084/m9.figshare.c.3642281_d6
title: Additional file 12: Table S3. of Gene expression meta-analysis reveals immune response convergence on the IFNÎł-STAT1-IRF1 axis and adaptive immune resistance mechanisms in lymphoma

description: Ranked list of genes contributing to shared meta-profiles of COO-classified and COO-unclassified DLBCL. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3642281_d16
title: Additional file 16: Table S4. of Gene expression meta-analysis reveals immune response convergence on the IFNÎł-STAT1-IRF1 axis and adaptive immune resistance mechanisms in lymphoma

description: Details for survival/outcome data related to the linear score. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3642281_d17
title: Additional file 5: Table S1. of Gene expression meta-analysis reveals immune response convergence on the IFNÎł-STAT1-IRF1 axis and adaptive immune resistance mechanisms in lymphoma

description: Lists of Meta-profile genes differentially expressed between DLBCL COO classes. (XLSX 2318 kb)
DOI: 10.6084/m9.figshare.c.3642281_d18
title: Additional file 17: Table S6. of Gene expression meta-analysis reveals immune response convergence on the IFNÎł-STAT1-IRF1 axis and adaptive immune resistance mechanisms in lymphoma

description: Signature and ontology enrichments for the leading edge of most correlated genes for each focus gene context. (XLSX 2731 kb)
DOI: 10.6084/m9.figshare.c.3642281_d19
title: Additional file 6: Table S2. of Gene expression meta-analysis reveals immune response convergence on the IFNÎł-STAT1-IRF1 axis and adaptive immune resistance mechanisms in lymphoma

description: Lists of enriched gene signature and gene ontology terms for COO-classified and COO-unclassified meta-profiles. (XLSX 2848 kb)
DOI: 10.6084/m9.figshare.c.3642350_d17
title: Additional file 16: Table S13. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Differently-expressed genes related to lipid metabolism in response to cold treatment of DX and GN genotypes. (XLSX 415 kb)
DOI: 10.6084/m9.figshare.c.3642350_d21
title: Additional file 12: Table S7. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Specifically expressed genes in DX and GN at 5 d under cold stress compared with control (0Â h). (XLSX 139 kb)
DOI: 10.6084/m9.figshare.c.3642350_d22
title: Additional file 17: Table S12. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Differently-expressed genes related to signaling transduction during the early phases of cold stress. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3642350_d23
title: Additional file 2: Table S1. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Summary of transcripts assembly. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3642350_d25
title: Additional file 20: Table S14. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Differently-expressed genes related to ROS producing and scavenging system in response to cold treatment of DX and GN genotypes. (XLSX 397 kb)
DOI: 10.6084/m9.figshare.c.3642350_d24
title: Additional file 9: Table S4. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Annotation of 4074 DEGs between DX and GN in response to cold stress. (XLSX 1516 kb)