cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13636957
title: Additional file 8 of SequencErr: measuring and suppressing sequencer errors in next-generation sequencing data

description: Additional file 8: Supplementary Table S7. All flow cells affected in an outlier sequencer.
DOI: 10.6084/m9.figshare.13636957.v1
title: Additional file 8 of SequencErr: measuring and suppressing sequencer errors in next-generation sequencing data

description: Additional file 8: Supplementary Table S7. All flow cells affected in an outlier sequencer.
DOI: 10.6084/m9.figshare.21501282
title: Additional file 9 of Variety-Specific Transcriptional and Alternative Splicing Regulations Modulate Salt Tolerance in Rice from Early Stage of Stress

description: Additional file 9: Supplementary tables for more detailed information for RNA-Seq data analyses.
DOI: 10.34740/kaggle/dsv/7561098
title: UNET Lung Segmentation Weights for Chest X Rays
DOI: 10.6084/m9.figshare.21501282.v1
title: Additional file 9 of Variety-Specific Transcriptional and Alternative Splicing Regulations Modulate Salt Tolerance in Rice from Early Stage of Stress

description: Additional file 9: Supplementary tables for more detailed information for RNA-Seq data analyses.
DOI: 10.34740/kaggle/dsv/7561099
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.6084/m9.figshare.13636960
title: Additional file 9 of SequencErr: measuring and suppressing sequencer errors in next-generation sequencing data

description: Additional file 9: Supplementary Table S8. Surface-level sequencer error rate.
DOI: 10.6084/m9.figshare.13636960.v1
title: Additional file 9 of SequencErr: measuring and suppressing sequencer errors in next-generation sequencing data

description: Additional file 9: Supplementary Table S8. Surface-level sequencer error rate.
DOI: 10.5281/zenodo.10617784
title: MEGASKILLS-WP2-D2.3-OTH-240205-v01

description: This dataset contains the evaluation of soft skills definitions by five experts. The evaluation criteria were precision, clarity, conciseness, consistency, explanatory power, contextual relevance, non-circularity, inclusiveness and exclusiveness 

This dataset is created within the project MEGASKILLS – MEthodology of Psycho-pedagogical, Big Data and Commercial Video GAmes procedures for the European SKILLS Agenda Implementation (Project number: 101094275). Funded by the European Union. Views and opinions expressed are however those of the authors only and do not necessarily reflect those of the European Union or the European Research Executive Agency. Neither the European Union nor the granting authority can be held responsible for them.
DOI: 10.6084/m9.figshare.19404148
title: A critical review of uranium in the soil-plant system: Distribution, bioavailability, toxicity, and bioremediation strategies

description: Increasing uranium (U) content in soils due to anthropogenic U contamination causes accumulation of U in plants, which greatly increases human health risks. This review identified the diverse sources of soil U contamination and their significant spatial variations in surface soils globally based on 789 soil sampling sites collected from 76 studies. The relationships between U biogeochemical transformation and its bioavailability in soil are significantly affected by soil redox potential, pH, metal (hydr)oxides, organic matter, and microorganisms. The toxicity/detoxification mechanisms of U in plants and microorganisms have been extensively studied, and further studies should combine with omics techniques (proteomics, genomics, and metabolomics) to narrow the knowledge gaps in molecular mechanisms. Moreover, the mechanisms and applicability of phytoremediation and microbial bioremediation in U-contaminated soils were summarized. Based on the present review, we further propose several critical challenges and directions for improving our knowledge and remediation strategies of U contamination in the soil-plant system. This review would help us better understand the geochemical behavior of U in soil-plant systems and its potential risks to human health.
DOI: 10.6084/m9.figshare.19404148.v1
title: A critical review of uranium in the soil-plant system: Distribution, bioavailability, toxicity, and bioremediation strategies

description: Increasing uranium (U) content in soils due to anthropogenic U contamination causes accumulation of U in plants, which greatly increases human health risks. This review identified the diverse sources of soil U contamination and their significant spatial variations in surface soils globally based on 789 soil sampling sites collected from 76 studies. The relationships between U biogeochemical transformation and its bioavailability in soil are significantly affected by soil redox potential, pH, metal (hydr)oxides, organic matter, and microorganisms. The toxicity/detoxification mechanisms of U in plants and microorganisms have been extensively studied, and further studies should combine with omics techniques (proteomics, genomics, and metabolomics) to narrow the knowledge gaps in molecular mechanisms. Moreover, the mechanisms and applicability of phytoremediation and microbial bioremediation in U-contaminated soils were summarized. Based on the present review, we further propose several critical challenges and directions for improving our knowledge and remediation strategies of U contamination in the soil-plant system. This review would help us better understand the geochemical behavior of U in soil-plant systems and its potential risks to human health.
DOI: 10.5281/zenodo.10617783
title: MEGASKILLS-WP2-D2.3-OTH-240205-v01

description: This dataset contains the evaluation of soft skills definitions by five experts. The evaluation criteria were precision, clarity, conciseness, consistency, explanatory power, contextual relevance, non-circularity, inclusiveness and exclusiveness 

This dataset is created within the project MEGASKILLS – MEthodology of Psycho-pedagogical, Big Data and Commercial Video GAmes procedures for the European SKILLS Agenda Implementation (Project number: 101094275). Funded by the European Union. Views and opinions expressed are however those of the authors only and do not necessarily reflect those of the European Union or the European Research Executive Agency. Neither the European Union nor the granting authority can be held responsible for them.
DOI: 10.6084/m9.figshare.7345535
title: Additional file 10: of Systematic analysis of genes involved in oral cancer metastasis to lymph nodes

description: Table S10. KEGG Pathways of Consistent Overlapping DEGs. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7345535.v1
title: Additional file 10: of Systematic analysis of genes involved in oral cancer metastasis to lymph nodes

description: Table S10. KEGG Pathways of Consistent Overlapping DEGs. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.14685579
title: A comprehensive annotation dataset of intact LTR retrotransposons of 300 plant genomes

description: All data are stored in plain text (txt) format. Each text file includes the structure information and divergence of intact LTR-RTs detected for a specific plant genome.
DOI: 10.6084/m9.figshare.7345550
title: Additional file 11: of Systematic analysis of genes involved in oral cancer metastasis to lymph nodes

description: Table S11. Interacting Gene Pairs of Consistent Overlapping DEGs. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7345550.v1
title: Additional file 11: of Systematic analysis of genes involved in oral cancer metastasis to lymph nodes

description: Table S11. Interacting Gene Pairs of Consistent Overlapping DEGs. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7345565
title: Additional file 1: of Systematic analysis of genes involved in oral cancer metastasis to lymph nodes

description: Table S1. DEGs of GSE70604 Associated Study. (XLSX 106 kb)
DOI: 10.6084/m9.figshare.7345565.v1
title: Additional file 1: of Systematic analysis of genes involved in oral cancer metastasis to lymph nodes

description: Table S1. DEGs of GSE70604 Associated Study. (XLSX 106 kb)
DOI: 10.6084/m9.figshare.7345580
title: Additional file 2: of Systematic analysis of genes involved in oral cancer metastasis to lymph nodes

description: Table S3. Upregulated DEGs of GSE70604 Associated Study. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.7345580.v1
title: Additional file 2: of Systematic analysis of genes involved in oral cancer metastasis to lymph nodes

description: Table S3. Upregulated DEGs of GSE70604 Associated Study. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.19928474
title: Comparative transcriptome analysis provides novel insights into phytohormone dynamic changes during seed germination in carrot (<i>Daucus carota</i> L.)

description: The germination of carrot seeds is a complex regulatory process and the relationship between phytohormone and carrot seed germination is unclear. We performed morphological observation, transcriptome sequencing, phytohormone content determination, and gene expression profiles analysis. The results showed that the white hypocotyls of carrot seeds grew rapidly on the 3 d, and cotyledons unfold on the 8 d. A total of 745 differentially expressed genes (DEGs) related to plant hormone signal transduction were identified at different germination stages (3, 5, 8 d), and most of the genes were up-regulated obviously in the later stage. The content of GA3 reached its peak on the first day of germination, with a content of 7.12 ng/g FW, and showed a trend of first decreasing, then increasing and decreasing. And the trend of GA4 content change was similar to GA3 content from 2 d to 8 d. The contents of indole-3-acetic acid (IAA) and methyl jasmonate (MeJA) showed a gradual increasing trend, while the content of abscisic acid (ABA) gradually decreased. The results of RT-qPCR showed that DcGA3ox1 and DcAOC expressed decreased, while DcGA20ox2 and DcYUCCA increased in the whole process. These results provide potential new insights for the efficient production of carrots..
DOI: 10.6084/m9.figshare.19928474.v1
title: Comparative transcriptome analysis provides novel insights into phytohormone dynamic changes during seed germination in carrot (<i>Daucus carota</i> L.)

description: The germination of carrot seeds is a complex regulatory process and the relationship between phytohormone and carrot seed germination is unclear. We performed morphological observation, transcriptome sequencing, phytohormone content determination, and gene expression profiles analysis. The results showed that the white hypocotyls of carrot seeds grew rapidly on the 3 d, and cotyledons unfold on the 8 d. A total of 745 differentially expressed genes (DEGs) related to plant hormone signal transduction were identified at different germination stages (3, 5, 8 d), and most of the genes were up-regulated obviously in the later stage. The content of GA3 reached its peak on the first day of germination, with a content of 7.12 ng/g FW, and showed a trend of first decreasing, then increasing and decreasing. And the trend of GA4 content change was similar to GA3 content from 2 d to 8 d. The contents of indole-3-acetic acid (IAA) and methyl jasmonate (MeJA) showed a gradual increasing trend, while the content of abscisic acid (ABA) gradually decreased. The results of RT-qPCR showed that DcGA3ox1 and DcAOC expressed decreased, while DcGA20ox2 and DcYUCCA increased in the whole process. These results provide potential new insights for the efficient production of carrots..
DOI: 10.6084/m9.figshare.7345598
title: Additional file 3: of Systematic analysis of genes involved in oral cancer metastasis to lymph nodes

description: Table S2. Downregulated DEGs of GSE70604 Associated Study. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.7345598.v1
title: Additional file 3: of Systematic analysis of genes involved in oral cancer metastasis to lymph nodes

description: Table S2. Downregulated DEGs of GSE70604 Associated Study. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.7345610
title: Additional file 1: of Transcriptomic insights into the early host-pathogen interaction of cat intestine with Toxoplasma gondii

description: Table S1. Temporal changes in the number of the differentially expressed genes by cat chromosomes. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7345616
title: Additional file 4: of Systematic analysis of genes involved in oral cancer metastasis to lymph nodes

description: Table S4. DEGs of GSE2280 Associated Study. (XLSX 70 kb)
DOI: 10.6084/m9.figshare.7345616.v1
title: Additional file 4: of Systematic analysis of genes involved in oral cancer metastasis to lymph nodes

description: Table S4. DEGs of GSE2280 Associated Study. (XLSX 70 kb)
DOI: 10.6084/m9.figshare.7345610.v1
title: Additional file 1: of Transcriptomic insights into the early host-pathogen interaction of cat intestine with Toxoplasma gondii

description: Table S1. Temporal changes in the number of the differentially expressed genes by cat chromosomes. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7345622
title: Additional file 2: of Transcriptomic insights into the early host-pathogen interaction of cat intestine with Toxoplasma gondii

description: Table S2. Differentially expressed genes at 6, 12, 18, 24, 72 and 96 hours post-infection (hpi) compared with the control, uninfected cats. (XLSX 259 kb)
DOI: 10.6084/m9.figshare.7345622.v1
title: Additional file 2: of Transcriptomic insights into the early host-pathogen interaction of cat intestine with Toxoplasma gondii

description: Table S2. Differentially expressed genes at 6, 12, 18, 24, 72 and 96 hours post-infection (hpi) compared with the control, uninfected cats. (XLSX 259 kb)
DOI: 10.6084/m9.figshare.7345634
title: Additional file 5: of Systematic analysis of genes involved in oral cancer metastasis to lymph nodes

description: Table S5. Downregulated DEGs of GSE2280 Associated Study. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.7345634.v1
title: Additional file 5: of Systematic analysis of genes involved in oral cancer metastasis to lymph nodes

description: Table S5. Downregulated DEGs of GSE2280 Associated Study. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.7345646
title: Additional file 6: of Systematic analysis of genes involved in oral cancer metastasis to lymph nodes

description: Table S6. Upregulated DEGs of GSE2280 Associated Study. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.7345646.v1
title: Additional file 6: of Systematic analysis of genes involved in oral cancer metastasis to lymph nodes

description: Table S6. Upregulated DEGs of GSE2280 Associated Study. (XLSX 39 kb)
DOI: 10.5281/zenodo.10618017
title: Azimuthal velocity in Saturn magnetosphere from Figure 11 of Livi et al. (2014)

description: # Values obtained by pointing the data points on Figure 11 of Livi et al. (2014), using ImageJ## Livi, R., Goldstein, J., Burch, J. L., Crary, F., Rymer, A. M., Mitchell, D. G., & Persoon, A. M. # (2014, May). # Multi-instrument analysis of plasma parameters in Saturn’s equatorial, inner magnetosphere using corrections for spacecraft potential and penetrating background radiation. # Journal of Geophysical Research (Space Physics), 119 (5), 3683-3707.# doi:10.1002/2013JA019616, url:https://ui.adsabs.harvard.edu/abs/2014JGRA..119.3683L ## VARIABLE 1# NAME: cylindrical radius# UNIT: Kronian radii R_S## VARIABLE 2# NAME: azimuthal velocity# UNIT: km/s## VARIABLE 3# NAME: velocity std# UNIT: km/s# DESCRIPTION: estimate of the maximum value of the error bar shown by Livi et al. (2014)
DOI: 10.5281/zenodo.10618018
title: Azimuthal velocity in Saturn magnetosphere from Figure 11 of Livi et al. (2014)

description: # Values obtained by pointing the data points on Figure 11 of Livi et al. (2014), using ImageJ## Livi, R., Goldstein, J., Burch, J. L., Crary, F., Rymer, A. M., Mitchell, D. G., & Persoon, A. M. # (2014, May). # Multi-instrument analysis of plasma parameters in Saturn’s equatorial, inner magnetosphere using corrections for spacecraft potential and penetrating background radiation. # Journal of Geophysical Research (Space Physics), 119 (5), 3683-3707.# doi:10.1002/2013JA019616, url:https://ui.adsabs.harvard.edu/abs/2014JGRA..119.3683L ## VARIABLE 1# NAME: cylindrical radius# UNIT: Kronian radii R_S## VARIABLE 2# NAME: azimuthal velocity# UNIT: km/s## VARIABLE 3# NAME: velocity std# UNIT: km/s# DESCRIPTION: estimate of the maximum value of the error bar shown by Livi et al. (2014)
DOI: 10.6084/m9.figshare.7345661
title: Additional file 7: of Systematic analysis of genes involved in oral cancer metastasis to lymph nodes

description: Table S7. Consistent Overlapping DEGs. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7345661.v1
title: Additional file 7: of Systematic analysis of genes involved in oral cancer metastasis to lymph nodes

description: Table S7. Consistent Overlapping DEGs. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7345673
title: Additional file 8: of Systematic analysis of genes involved in oral cancer metastasis to lymph nodes

description: Table S8. Opposite Overlapping DEGs. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7345673.v1
title: Additional file 8: of Systematic analysis of genes involved in oral cancer metastasis to lymph nodes

description: Table S8. Opposite Overlapping DEGs. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.23598614
title: Metamorphic evolution and tectonic significance of Neoarchean high-pressure mafic granulites in the Central Limpopo Belt, South Africa

description: The Sand River area is in the northeastern part of the Central Zone (CZ) of the Limpopo Belt, and represents a key terrane to reveal early Precambrian tectonic processes in southern Africa. Based on petrology, U–Pb zircon ages, and major and trace element data of high-pressure (HP) mafic granulites from the Sand River area, the tectonic evolution of the Central Zone of the Limpopo Belt is re-evaluated here that allows revision of previous interpretations. The protoliths of the HP mafic granulites and amphibolites are sub-alkaline tholeiitic basalts similar to those formed at a mid-ocean ridge and intruded at 2.8 Ga. Based on the distinct mineral assemblages, three metamorphic stages (M<sub>1</sub>–M<sub>3</sub>) are recognized in the studied samples: (1) a peak HP granulite facies stage M<sub>1</sub> (~1.17–1.32 GPa/~825–870°C), (2) a post-peak near-isothermal decompression stage M<sub>2</sub> (~0.70–0.73 GPa/~835–880°C), and (3) a later, independent metamorphic stage M<sub>3</sub> (~0.53–0.69 GPa/~793–801°C). M<sub>1</sub> and M<sub>2</sub> define together a clockwise <i>P–T</i> path. It reveals important information related to the Neoarchean collisional orogeny, and its later overprinted by an independent orogeny with subsequent exhumation and cooling. U–Pb zircon dating of two mafic granulites samples yielded protolith formation of the mafic granulites is prior to ~2.72 Ga, and the two metamorphic age peaks of ~2.72 (M<sub>1</sub>) and ~2.0 Ga (M<sub>3</sub>), which present the peak and post-peak cooling stages, respectively. The metamorphic evolution of HP mafic granulites in the Sand River area as reconstructed in this study suggests the Neoarchean collision of the Kaapvaal and Zimbabwe cratons and a discrete Paleoproterozoic orogenic overprint followed by post-orogenic exhumation and cooling.
DOI: 10.6084/m9.figshare.23598614.v1
title: Metamorphic evolution and tectonic significance of Neoarchean high-pressure mafic granulites in the Central Limpopo Belt, South Africa

description: The Sand River area is in the northeastern part of the Central Zone (CZ) of the Limpopo Belt, and represents a key terrane to reveal early Precambrian tectonic processes in southern Africa. Based on petrology, U–Pb zircon ages, and major and trace element data of high-pressure (HP) mafic granulites from the Sand River area, the tectonic evolution of the Central Zone of the Limpopo Belt is re-evaluated here that allows revision of previous interpretations. The protoliths of the HP mafic granulites and amphibolites are sub-alkaline tholeiitic basalts similar to those formed at a mid-ocean ridge and intruded at 2.8 Ga. Based on the distinct mineral assemblages, three metamorphic stages (M<sub>1</sub>–M<sub>3</sub>) are recognized in the studied samples: (1) a peak HP granulite facies stage M<sub>1</sub> (~1.17–1.32 GPa/~825–870°C), (2) a post-peak near-isothermal decompression stage M<sub>2</sub> (~0.70–0.73 GPa/~835–880°C), and (3) a later, independent metamorphic stage M<sub>3</sub> (~0.53–0.69 GPa/~793–801°C). M<sub>1</sub> and M<sub>2</sub> define together a clockwise <i>P–T</i> path. It reveals important information related to the Neoarchean collisional orogeny, and its later overprinted by an independent orogeny with subsequent exhumation and cooling. U–Pb zircon dating of two mafic granulites samples yielded protolith formation of the mafic granulites is prior to ~2.72 Ga, and the two metamorphic age peaks of ~2.72 (M<sub>1</sub>) and ~2.0 Ga (M<sub>3</sub>), which present the peak and post-peak cooling stages, respectively. The metamorphic evolution of HP mafic granulites in the Sand River area as reconstructed in this study suggests the Neoarchean collision of the Kaapvaal and Zimbabwe cratons and a discrete Paleoproterozoic orogenic overprint followed by post-orogenic exhumation and cooling.
DOI: 10.6084/m9.figshare.7345691
title: Additional file 9: of Systematic analysis of genes involved in oral cancer metastasis to lymph nodes

description: Table S9. Top 10 GO Biological Processes of Consistent Overlapping DEGs. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7345691.v1
title: Additional file 9: of Systematic analysis of genes involved in oral cancer metastasis to lymph nodes

description: Table S9. Top 10 GO Biological Processes of Consistent Overlapping DEGs. (XLSX 12 kb)
DOI: 10.25318/1310087501-eng
title: Socioeconomic characteristics of the transgender and non-binary population, 2019 to 2021

description: Selected socioeconomic characteristics of the transgender or non-binary population aged 15 and older, by age group. Marital status, presence of children under age 12 in the household, education, employment, personal income, Indigenous identity, the visible minority population, immigrant status, language(s) spoken most often at home, place of residence (population centre/rural), self-rated general health, and self-rated mental health. Estimates are obtained from combined cycles of the Canadian Community Health Survey, 2019 to 2021.
DOI: 10.6084/m9.figshare.13637155
title: ATI1 (ATG8-interacting protein 1) and ATI2 define a plant starvation-induced reticulophagy pathway and serve as MSBP1/MAPR5 cargo receptors

description: Reticulophagy, the selective autophagy of endoplasmic reticulum (ER) components, is known to operate in eukaryotes from yeast and unicellular algae to animals and plants. Thus far, only ER-stress induced reticulophagy was reported and analyzed in plants. In this study we characterize a reticulophagy pathway in <i>Arabidopsis thaliana</i> that is triggered by dark-induced starvation but not by ER stress. This pathway is defined by the previously reported ATG8-interacting proteins, ATI1 and ATI2. We further identified the ER-localized MSBP1 (Membrane Steroid Binding Protein 1) as an ATI1- and ATI2-interacting protein and an autophagy cargo, and show that ATI1 and ATI2 serve as its cargo receptors. Together, these findings expand our knowledge on plant responses during energy deprivation and highlight the role of this special type of reticulophagy in this process. <b>Abbreviations</b>: AGO1: ARGONAUTE 1; ATI: ATG8-Interacting Protein; BiFC: Bimolecular Fluorescence Complementation; BR: brassinosteroid; conA: concanamycin A; DMSO: dimethyl sulfoxid; DTT: dithiothreitol; ER: endoplasmic reticulum; GFP: green fluorescent protein; MAPR: Membrane-Associated Progesterone Binding Protein; MSBP: Membrane Steroid Binding Protein; SD: standard deviation; SE: standard error; TM: tunicamycin; TOR: target of rapamycin; Y2H: yeast two-hybrid.