cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10901775
title: External resources

description: ex_databases: demo database `ex_databases`, which includes three sublists: `LigRec.DB`, `RecTF.DB`, and `TFTG.DB`. Each sublist consists of three columns: `source`, `target`, and `score`. In the aforementioned sublists, the `source` column represents signalling molecules such as ligands, receptors, and transcription factors, while the `target` column represents signalling molecules such as receptors, transcription factors, and target genes. The `score` column in `LigRec.DB` and `TFTG.DB` indicates the frequency of interactions occurring in the collected database, while the `score` column in `RecTF.DB` represents the predicted probabilities of interactions occurring in the collected database.

ex_inputs: The demo data is derived from the breast cancer dataset of 10X Visiumd, which can be found at [here](https://support.10xgenomics.com/spatial-gene-expression/datasets/1.1.0/V1_Breast_Cancer_Block_A_Section_1). We analyzed this spatial transcriptomic data using Seurat (Version 4.0.2) and performed deconvolution using the RCTD method. The demo data `ex_inputs`, which includes:

    `exprMat`: Normalized expression matrix.    `annoMat`: Cell type annotation matrix.    `locaMat`: Spatial location information matrix.    `ligs_of_inter`: Potential ligand lists for different cell types.    `recs_of_inter`: Potential receptor lists for different cell types.    `tgs_of_inter`: Potential target gene lists for different cell types.


unprocessed_ex_inputs: The demo data is derived from the breast cancer dataset of 10X Visiumd, which can be found at [here](https://support.10xgenomics.com/spatial-gene-expression/datasets/1.1.0/V1_Breast_Cancer_Block_A_Section_1). We analyzed this spatial transcriptomic data using Seurat (Version 4.0.2) and performed deconvolution using the RCTD method. The demo data `unprocessed_ex_inputs`, which includes:    `exprMat`: Normalized expression matrix.


               `exprMat`: Unnormalized expression matrix.              `annoMat`: Cell type annotation matrix.              `locaMat`: Spatial location information matrix.
DOI: 10.15468/dl.bb8n3a
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phlomoides tournefortii (Jaub. & Spach) Kamelin & Makhm."
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075083-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25370491.v3
title: MMSCRP-TC系列

description: Combined with the regulations of weather station siting and the high mobility and flexibility of portable weather stations, an MMSCRP-TC model is proposed in response to the time-varying characteristics of rainfall in urban areas and the demand for refined monitoring. The continuous monitoring time period is divided into several subperiods, and portable weather stations are added and relocated according to the changing monitoring demands. The model aims to maximize the coverage benefits (weighted by rainfall values) as its first objective and to minimize the total travel costs incurred in the relocation as its second objective. In addition, the parameter effective monitoring time is included in the model to ensure the quality and accuracy of data. The applicability of the model is verified by taking a rainfall event in Wuhan as an example. The results show the model can effectively provide appropriate locations and the movement paths of portable weather stations during repositioning, responding to rainfall monitoring demands with drastic spatial–temporal variations in a more flexible and timely manner.
DOI: 10.15468/dl.e6v3cu
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pleiogynium papuanum C.T.White"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075085-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qcf59g
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pimpinella pruatjan Molk."
 ]
}

 The dataset includes 47 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075086-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fmrdj5
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polyalthia chantaranothaii Bunchalee & Chalermglin"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075087-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bm3hk8
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Planchonella microphylla Pierre ex Dubard"
 ]
}

 The dataset includes 63 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075088-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jebraz
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phyllanthus villosus Poir."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075090-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3sej5e
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phlomoides transoxana (Bunge) Salmaki"
 ]
}

 The dataset includes 6 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075089-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yepxad
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polyalthia charitopoda I.M.Turner"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075092-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vt7y34
title: Occurrence Download

description: A dataset containing 1287 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pleiogynium timoriense (DC.) Leenh."
 ]
}

 The dataset includes 1287 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075091-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wk2fps
title: Occurrence Download

description: A dataset containing 233 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pimpinella puberula (DC.) Boiss."
 ]
}

 The dataset includes 233 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075093-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wwy59t
title: Occurrence Download

description: A dataset containing 165 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cataetyx laticeps Koefoed, 1927"
 ]
}

 The dataset includes 165 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075094-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h4r29f
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Planchonella mindanaensis H.J.Lam"
 ]
}

 The dataset includes 10 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075095-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q4agc3
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phlomoides tschimganica (Vved.) Adylov, Kamelin & Makhm."
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075098-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s98sp3
title: Occurrence Download

description: A dataset containing 7571 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phyllanthus virgatus G.Forst."
 ]
}

 The dataset includes 7571 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075096-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vp8uss
title: Occurrence Download

description: A dataset containing 322 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((85.8135 20.32434,98.25108 20.32434,98.25108 28.76961,85.8135 28.76961,85.8135 20.32434))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Emberiza melanocephala Scopoli, 1769"
 ]
}

 The dataset includes 322 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075097-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5caze4
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polyalthia chinii I.M.Turner & Utteridge"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075099-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jjhhc6
title: Occurrence Download

description: A dataset containing 399 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Malaysia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Nepenthes gracilis Korth."
 ]
}

 The dataset includes 399 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075100-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zynqu8
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pleioluma acutifolia Swenson & Munzinger"
 ]
}

 The dataset includes 17 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075101-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e5pxn8
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pimpinella purpurea (Franch.) H.Boissieu"
 ]
}

 The dataset includes 116 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075102-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tk7vdu
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Planchonella minutiflora Munzinger & Swenson"
 ]
}

 The dataset includes 23 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075104-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9zt3mn
title: Occurrence Download

description: A dataset containing 1332212 species occurrences available in GBIF matching the query:
{
 "ClassKey" : [
 "is Clitellata"
 ]
}

 The dataset includes 1332212 records from 1583 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074956-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3mfe6r
title: Occurrence Download

description: A dataset containing 219 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Herbertia lahue",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 219 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009637-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30016297
title: <b>Visualization and quantitative detection of </b><b>Shigella sonnei</b><b> by phage-directed nanozyme</b>

description: Shigella sonnei, a prevalent foodborne zoonotic pathogen, exhibits a high transmission rate in regions with poor healthcare infrastructure and limited resources. This pathogen is commonly associated with dairy, animal, fruit, and vegetable products, causing considerable safety concerns in clinical and food processing. In this study, the lytic phage vB_SsP_LW was immobilized onto the surface of a magnetic Fe3O4 nanozyme via amidation, resulting in the formation of the composite vB_SsP_LW@Fe3O4, which exhibits a peroxidase-like activity. This composite can oxidize TMB to TMBox in the presence of H2O2 and TMB within 15 min, facilitating the detection of S. sonnei at a detection limit of 12 CFU/mL. The recovery rate of the detection method ranges from 91.87% to 106%, with a relative standard deviation between 1.4% and 5.6%. Furthermore, this method exhibits specificity, making it challenging to identify other bacterial species. These findings indicate the application potential of vB_SsP_LW@Fe3O4 in food safety detection.
DOI: 10.6084/m9.figshare.30016297.v1
title: <b>Visualization and quantitative detection of </b><b>Shigella sonnei</b><b> by phage-directed nanozyme</b>

description: Shigella sonnei, a prevalent foodborne zoonotic pathogen, exhibits a high transmission rate in regions with poor healthcare infrastructure and limited resources. This pathogen is commonly associated with dairy, animal, fruit, and vegetable products, causing considerable safety concerns in clinical and food processing. In this study, the lytic phage vB_SsP_LW was immobilized onto the surface of a magnetic Fe3O4 nanozyme via amidation, resulting in the formation of the composite vB_SsP_LW@Fe3O4, which exhibits a peroxidase-like activity. This composite can oxidize TMB to TMBox in the presence of H2O2 and TMB within 15 min, facilitating the detection of S. sonnei at a detection limit of 12 CFU/mL. The recovery rate of the detection method ranges from 91.87% to 106%, with a relative standard deviation between 1.4% and 5.6%. Furthermore, this method exhibits specificity, making it challenging to identify other bacterial species. These findings indicate the application potential of vB_SsP_LW@Fe3O4 in food safety detection.
DOI: 10.15468/dl.smrxyv
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Herbertia lahue",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009638-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/85h-c2d-vsn
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/klr-cje-k8x
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j0w-1q8-mdb
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t89-e3m-v06
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tgy-gal-ajc
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.3akxvg
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Fundulopanchax sjostedti, Fundulopanchax traudeae, Fundulopanchax walkeri, Fundulosoma thierryi, Nothobranchius thierryi, Galaxias zebratus, Garra aethiopica, Garra allostoma, Garra andruzzii, Garra blanfordii, Garra congoensis, Garra dembecha, Garra dembeensis, Garra duobarbis, Garra ethelwynnae, Garra geba, Garra hindii, Garra ignestii, Garra lancrenonensis, Garra makiensis, Garra ornata, Garra regressus, Garra tana, Garra trewavasae, Garra waterloti, Gasterosteus aculeatus, Gazza minuta, Genyochromis mento, Genyomyrus donnyi, Gephyrochromis lawsi, Gephyrochromis moorii, Gephyroglanis congicus, Gephyroglanis gymnorhynchus, Gephyroglanis habereri, Gerres filamentosus, Gilchristella aestuaria, Glossogobius ankaranensis, Glossogobius callidus, Glossogobius giuris, Gnathochromis permaxillaris, Gnathonemus barbatus, Gnathonemus echidnorhynchus, Gnathonemus longibarbis, Gnathonemus petersii, Gobio gobio, Gobiocichla ethelwynnae, Gobiocichla wonderi, Gobioides sagitta, Gobiopsis pinto, Gobitrichinotus arnoulti, Gobius hypselosoma, Gogo arcuatus, Gogo atratus, Gogo brevibarbis, Gogo ornatus, Grammatotria lemairii, Grasseichthys gabonensis, Greenwoodochromis abeelei, Greenwoodochromis bellcrossi, Greenwoodochromis christyi, Greenwoodochromis staneri, Gymnallabes nops, Gymnallabes typus, Gymnarchus niloticus, Haplochromis acidens, Haplochromis aelocephalus, Haplochromis aeneocolor, Haplochromis akika, Haplochromis albertianus, Haplochromis altigenis, Haplochromis ampullarostratus, Haplochromis angustifrons, Haplochromis annectidens, Haplochromis antleter, Haplochromis apogonoides, Haplochromis arcanus, Haplochromis argens, Haplochromis argenteus, Haplochromis artaxerxes, Haplochromis avium, Haplochromis azureus, Haplochromis bakongo, Thoracochromis bakongo, Haplochromis barbarae, Haplochromis bareli, Haplochromis bartoni, Haplochromis bayoni, Haplochromis beadlei, Haplochromis bicolor, Haplochromis bloyeti, Haplochromis boops, Haplochromis brownae)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((1.1382 20.0599,-7.8618 20.0599,-7.8618 11.0599,1.1382 11.0599,1.1382 20.0599))"
 ]
}

 The dataset includes 27 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009639-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/a96-fbz-kfb
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/eqv-qwb-460
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pdg-43m-psz
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ykz-0xk-rs4
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/45b-7sc-m0g
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7wl-1a8-41r
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9cz-9ht-32y
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/82k-bt6-qdy
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f1l-bts-r4c
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t20-2ba-rqz
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hy6-57w-zw2
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hz3-f2q-07t
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ve4-fh8-wqd
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3kq-fhg-bm7
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/99w-vhz-bfg
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bee-h5y-kv3
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f1n-4g8-llh
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sam-fqx-nv7
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wgt-7gr-6gw
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.16834198.v1
title: Scopus 1900-2020: Growth in articles, abstracts, countries, fields, and journals

description: Data, graphs and online supplement from the paper: Scopus 1900-2020: Growth in articles, abstracts, countries, fields, and journals