cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22192831.v3
title: Driving behaviour multimodal human factors preprocessed dataset

description: Driving behaviour multimodal human factors preprocessed dataset, including EEG, EMG, ECG and GSR.
DOI: 10.6084/m9.figshare.25757832.v1
title: Vision Drive Dataset

description: The VisionDrive Dataset with Representation of Hijabi and Veiled Female Drivers addresses a significant gap in existing datasets by providing a balanced representation of male and female drivers, particularly focusing on the inclusion of Hijabi (female covering head) and veiled (female having head and face covered) drivers. This dataset is designed to facilitate research and development in driver activity recognition systems, ensuring inclusivity and accuracy across diverse demographics.
DOI: 10.6084/m9.figshare.7178327.v2
title: 2018 Nature Careers Salary Survey Data

description: Raw data from 2018 Nature Careers Salary Survey
DOI: 10.6084/m9.figshare.26322172.v1
title: Monitored and simulated environmental performance data about a school in Mali with an experimental double-ventilated roof

description: These folders contain the monitored and simulated environmental performance data about a school in Mali with an experimental double-ventilated roof.
DOI: 10.6084/m9.figshare.15096669.v1
title: Supplementary Material for: YAP1 Overexpression Is Associated with Kidney Dysfunction in Lupus Nephritis

description: <b><i>Objective:</i></b> The goal of the present study was to determine the expression of yes-associated protein 1 (YAP1) in renal tissues of mice with lupus nephritis (LN) and elucidate its role in the progression of renal fibrosis. <b><i>Methods:</i></b> C57BL/6 mice and MRL/lpr mice were selected for experimental comparison. Mouse kidney tissues were removed and sectioned for hematoxylin and eosin staining, Masson’s trichome staining, Sirius staining, and immunohistochemistry. The mRNA and protein levels of YAP1 in mouse kidney tissues were detected, and the correlation between YAP1 and fibronectin (FN) mRNA levels was analyzed. Mouse renal epithelial cells were used for in vitro experiments. After transfection and stimulation, the cells were divided into 4 groups, namely the C57BL/6 serum group (group 1), the MRL/lpr serum group (group 2), the MRL/lpr serum + siRNA-negative control group (group 3), and the MRL/lpr serum + siRNA-YAP1 group (group 4). Epithelial-mesenchymal transition (EMT) markers in each group were detected by Western blotting and immunofluorescence staining. Serum creatinine, blood urea nitrogen, and urinary protein levels were detected and assessed for their correlation with YAP1 mRNA levels by Spearman’s analysis. <b><i>Results:</i></b> Compared to C57BL/6 mice, MRL/lpr mice exhibited obvious changes in fibrosis in renal tissues. In addition, YAP1 expression was significantly higher in the renal tissues of MRL/lpr mice than in those of C57BL/6 mice, and YAP1 mRNA levels were positively correlated with those of FN. YAP1 silencing in lupus serum-stimulated cells could effectively relieve serum-induced EMT. Finally, we observed that YAP1 mRNA levels in mouse kidney tissue were significantly and positively correlated with the degree of renal function injury. <b><i>Conclusion:</i></b> YAP1 expression in the kidney tissues of LN mice was higher than that observed in normal mice, indicating that YAP1 may play an important role in the occurrence and development of LN.
DOI: 10.6084/m9.figshare.1531955.v1
title: MODIS Cloud Climatology

description: Data from<strong> </strong><i>Remotely sensed high-resolution global cloud dynamics for predicting ecosystem and biodiversity distributions. PLOS Biology.</i> <strong>MCD09_mean 1-12: </strong>Mean monthly cloud frequency over 2000-2014. Data has a gain/scale of 100 (you will need to divide by 100 to convert back to percent: 0-100).<strong>MCD09_sd 1-12: </strong>Standard deviation of mean monthly cloud frequency over 2000-2014. Data has a gain/scale of 100 (you will need to divide by 100 to convert back to percent: 0-100).<strong>CloudForestPrediction:</strong> Distribution (relative occurrence rate) of tropical montane cloud forests estimated using an inhomogeneous point process model of 529 cloud forest locations with the new cloud metrics and elevation.Other data: See associated text files for descriptions.
DOI: 10.6084/m9.figshare.5656957.v1
title: Additional file 5: of Using variant databases for variant prioritization and to detect erroneous genotype-phenotype associations

description: Variants inside the variant database flagged by the quantile-based approach for further investigation. (XLS 42Â kb)
DOI: 10.6084/m9.figshare.28649129.v2
title: Madagascar scavengers Data 2023

description: Madagascar rainforests exhibit very high levels of biodiversity and endemicity but face numerous impacts that jeopardize their biological communities. Some ecological processes are deeply understudied in these ecosystems, such as scavenging (i.e., consumption of decaying meat) on an island lacking obligate scavengers. This work addressed the effect that habitat type, carcass type and land protection have on the scavenger community in Madagascar. For this approach, thirty small carcasses (~50 g) were installed in areas of primary and secondary forest within and around Ranomafana National Park and were monitored using photo-trapping techniques over 24 h. The cameras detected three endemic species, the Malagasy civet (<i>Fossa fossana</i>), the ring-tailed vontsira (<i>Galidia elegans</i>) and, for the first time, the tufted-tailed rat (<i>Eliurus</i> sp.), and two introduced species, the cat (<i>Felis catus</i>) and the black rat (<i>Rattus rattus</i>) making trophic use of carcasses. Habitat composition and land protection influenced the presence of native and exotic species within the scavenger community, but not species richness, abundance or carcass detection time. All species detected in primary forest were native and endemic, whereas to only 57 % of those detected in secondary forest. We only registered invasive species outside the protected area, while native, endemic species were restricted within the park borders. Habitat protection and anthropization may play a key role in the presence of invasive species in the community of scavenger vertebrates in Madagascar.
DOI: 10.6084/m9.figshare.23508891.v1
title: 07 Nwestbladi. Annotation file. GFF3. HiFi genome

description: Annotation (in format GFF3) of the genome of Nemertoderma westbladi sequenced with HiFi
DOI: 10.15468/dl.jebqgs
title: Occurrence Download

description: A dataset containing 5618360 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Natural History Museum (London) Collection Specimens"
 ]
}

 The dataset includes 5618360 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013465-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28034498.v2
title: Pre-processed data for Vélez-Fort et al., 2025

description: To use this dataset, follow the instructions from step 7 onwards as described in:https://github.com/SainsburyWellcomeCentre/rc2_analysis<br><br>
DOI: 10.17044/scilifelab.14229410.v1
title: PRONMED Uppsala COVID-19 ICU Biobank

description: The dataset consists clinical data and biobankes samples from 250 critically ill COVID-19 patients admitted to intensive care at Uppsala University Hospital.<br>During intensive care patients are sampled during weekdays. Wholeblood is collected for DNA sequencing. EDTA- and citrate-plasma, with corresponding cell pellets as well as urine is collected and frozen at -80°C until further use. In addition, PBMCs, PAX tubed for RNA-stabilized blood, and CyTOF tubes for single cell proteomics are collected and frozen. At follow-up after 3-6 months and after 1 year from discharge the corresponding convalescent samples are collected and frozen. All included patients, or next of kin sign an informed consent at the inclusion in the study making it possible to use the samples directly for studies focusing on the genetic, physiological and cellular mechanisms behind the disease and to share samples and data with collaborators both nationally and internationally.<br>Any researcher interested in samples can contact the study to discuss their idea and sample requirements, whereafter material transfer agreements and data transfer agreements can be drafted. <br>For all patients there is detailed clinical information on underlying disease, disease severity, treatment while in ICU and remaining symptoms and physiology at follow-up after 3-6 months and after one year. The dataset includes all routine biochemistry from one year before admission to the ICU until follow-up. There is diagnostic virus quantification for most patients, antibody titers of IgG, IgA and IgM for the SARS-COV-2 spike protein on most patients, and multiplex data on plasma cytokine expression at admission in most patients. In addition all patients have been genotyped as part of the COVID-19 Host Genetics Initiative and most patients have Whole Exome Sequencing data.<br>Clinical patient data are collected in an electronic Case Report Form (eCRF) and stored in a pseudoanonymized database. Genetic and other datasets are identified through the same pseudoanonymization scheme. Any researcher interested in individual data can contact the study to discuss their idea and data requirements, whereafter data transfer agreements can be drafted.<br><br><i>Published articles</i><br>2021Lipcsey et al. 10.3389/fimmu.2021.627579<i></i>Zhou et al. https://doi.org/10.1038/s41591-021-01281-1Hultström et al. https://doi.org/10.1186/s13054-021-03461-4Ahlström et al.https://doi.org/10.1111/aas.13781Luther et al. 10.1111/aas.13746<br><br>2020Bülow Anderberg et al.10.1016/j.cyto.2020.155389Asif et al. https://doi.org/10.1186/s13054-020-03362-yFrithiof et al.10.1186/s13054-020-03302-wStattin et al. 10.1016/j.jcrc.2020.08.026Hultström et al.10.1186/s13054-020-03223-8Eriksson et al.10.1055/s-0040-1715835Hultström et al.10.1097/HJH.0000000000002531 <i>For full list see publications incl. preprints see authors Michael Hultström, Miklós Lipcsey, and Robert Frithiof in</i><br><i>https://publications-covid19.scilifelab.se/</i>
DOI: 10.6084/m9.figshare.13664453.v1
title: snpsnap_database_ld0.9

description: SNPSNAP database dowloaded from https://data.broadinstitute.org/mpg/snpsnap/. <br>This database is restricted to ld0.9 from the European population.
DOI: 10.6084/m9.figshare.16644724.v2
title: data

description: the data on temperature sensitivity of soil respiration in response to N desposition collected from 168 published papers based on field N enrichment experiments
DOI: 10.6084/m9.figshare.16938718.v1
title: Azraq Refugee Data

description: De-identified data of controlled trial of Problem Management Plus in Syrian refugees in Jordan
DOI: 10.6084/m9.figshare.22336360.v1
title: Raw data - SLD and Screentime.docx

description: This is an exploratory study which determines to associate the presence of spoken language disorder among pre-school schildren with increased screentime.
DOI: 10.6084/m9.figshare.6265292.v3
title: Patient01

description: Male Patient with 201 slices of pulmonary embolism CT-Angiography
DOI: 10.6084/m9.figshare.24442444.v1
title: Supplementary Tables and Information for publication by Burton et al., 2023 in Nature Communications Earth and Environment entitled "Exceptional eruptive CO2 emissions from intra-plate alkaline magmatism in the Canary volcanic archipelago"

description: Results from measurements of gas emissions from the 2012 Eruption of Tajogaite on La Palma, Canary Islands, Spain
DOI: 10.6084/m9.figshare.19251599.v1
title: Integrated faecal microbiome-metabolome signatures reflect stress and serotonin metabolism in Irritable Bowel Syndrome - integrated NMR data

description: Integrated NMR data of 49 metabolites in faecal water from 267 IBS patients and healthy controls.<br>
DOI: 10.6084/m9.figshare.28908290.v2
title: CF_po1_raw_mouse_data

description: The Raw genotype and phenotype data of Diversity Outbred mouse
DOI: 10.6084/m9.figshare.25674663.v1
title: Data for quantum subspace expansion in the presence of hardware noise

description: The data, figures and python scripts of the following paper:<br><br>J. C. Getelina, P. Sharma, T. Iadecola, P. P. Orth, and Y.-X. Yao, "Quantum Subspace Expansion in the Presence of Hardware Noise," arXiv:2404.09132.
DOI: 10.6084/m9.figshare.12547259.v1
title: Clean data of 3v3 circRNA seq (PBMCs of IgAN patients) part 3

description: The clean data of peripheral blood mononuclear cells' circRNA seq of 3 IgA nephropathy patients vs 3 healthy controls.Part 3 of 3 parts.
DOI: 10.6084/m9.figshare.22332568.v1
title: HCC atlas

description: To profile the tumor microenvironment (TME) landscape in HCC, we compiled a single-cell atlas with 251,761 cells from 83 donors enrolled in 6 studies. Unsupervised clustering revealed 7 major cell components, including hepatocytes, mesenchymal cells, endothelial cells, myeloid cells, B cells, T cells and NK cells, which were further partitioned through a second round of clustering to generate 53 clusters.
DOI: 10.6084/m9.figshare.1056553.v1
title: Spatio-temporal grounding of claims made on the web

description: Social media presents us with a digitally-accessible sample of all human discourse. This sample is full of claims and assertions. While the state of the art in NLP is adapting to the volume, velocity and variety of this sample and the information in it, the accuracy of claims made in social media remain largely unstudied. PHEME, a 36-month EU project started in January 2014, focuses on this fourth challenge:<br>veracity. As a core part of establishing veracity, we need to identify the spatio-temporal context of assertions made on informal websites. <br>This project note introduces the spatio-temporal challenges and planned semantic annotation activities that are part of the PHEME project.
DOI: 10.6084/m9.figshare.22341832.v1
title: Dose rate dependent reduction in chromatin accessibility at transcriptional start sites long time after exposure to gamma radiation

description: Ionizing radiation (IR) impact cellular and molecular processes that require chromatin remodelling relevant for cellular integrity. However, the cellular implications of ionizing radiation (IR) delivered per time unit (dose rate) are still debated. This study investigates whether the dose rate is relevant for inflicting changes to the epigenome, represented by chromatin accessibility, or whether it is the total dose that is decisive. CBA/CaOlaHsd mice were whole-body exposed to either chronic low dose rate (2.5 mGy/h for 54 d) or the higher dose rates (10 mGy/h for 14 d and 100 mGy/h for 30 h) of gamma radiation (<sup>60</sup>Co, total dose: 3 Gy). Chromatin accessibility was analysed in liver tissue samples using Assay for Transposase-Accessible Chromatin with high-throughput sequencing (ATAC-Seq), both one day after and over three months post-radiation (&gt;100 d). The results show that the dose rate contributes to radiation-induced epigenomic changes in the liver at both sampling timepoints. Interestingly, chronic low dose rate exposure to a high total dose (3 Gy) did not inflict long-term changes to the epigenome. In contrast to the acute high dose rate given to the same total dose, reduced accessibility at transcriptional start sites (TSS) was identified in genes relevant for the DNA damage response and transcriptional activity. Our findings link dose rate to essential biological mechanisms that could be relevant for understanding long-term changes after ionizing radiation exposure. However, future studies are needed to comprehend the biological consequence of these findings.
DOI: 10.6084/m9.figshare.1305817.v2
title: Mental health data of 77 Mexican medical students (PHQ-9, GAD-7 and Epworth Sleepiness Scale Scores)

description: <strong>Data </strong><strong>description</strong> In 2014, we randomly selected 1200 of 4520 medical students enrolled in a private Mexican university. 776 Medical students agreed to participate (64.6% response).<br> <strong>Variables</strong>- unique anonymous identifier: "id"- school year in course (1,2,3,4): "school_year"- semester in course (1,2,3,4,5,6,7,8): "semester"- age in years: "age" - binary gender: "gender"- Height in meters: "height"- Weight in kg: "weight"- PHQ-9: "phq1", "phq2", ... "phq9"<br>- Whether if the student has seriously thought dropping out of school: "thoughts_of_dropping_out"- Previous depression diagnosis: "previous_depression_diagnosis"- Previous medical treatment for depression: "previous_depression_treatment" - GAD-7: "gad1", "gad2", ... "gad7"- Previous anxiety diagnosis: "previous_anxiety_diagnosis"- Previous medical treatment for anxiety: "previous_anxiety_treatment" - Epworth Sleepiness Scale: "epworth1", "epworth2", ..."epworth9".- Self reported usual bed time (going to sleep): "bed_time"- Self reported usual wake up time: "wake_up_time"- Self reported night sleep hours: "reported_sleep_hours"- Self reported number of times for taking naps in a week: "times_week_nap"- Self reported usual duration of such naps: "nap_duration"- Self reported number of extra-school weekly hours dedicated to studying: "weekly_study_hours"- Self reported grade point average (1.0-10.0) to date: "grades"<br><b>References:</b> <strong>PHQ-9:</strong> Adewuya AO, Ola BA, Afolabi OO. Validity of the patient health questionnaire (PHQ-9) as a screening tool for depression amongst Nigerian university students. J Affect Disord. 2006;96:89- 93. <strong>GAD-7:</strong> Garcia-Campayo J, Zamorano E, Ruiz MA et al. Cultural adaptation into Spanish of the generalized anxiety disorder-7 (GAD-7) scale as a screening tool. Health and Quality of Life Outcomes. 2010;8. The GAD-7 scale was accurate for diagnosing generalised anxiety disorder. Spitzer RL, Kroenke K, Williams JB, et al. A brief measure for assessing generalised anxiety disorder: the GAD-7. Arch Intern Med 2006;166:1092–7. <strong>Epworth Sleepiness Scale: </strong>Johns, Murray W. "A new method for measuring daytime sleepiness: the Epworth sleepiness scale." sleep 14.6 (1991): 540-545. Campos-Morales, Rosa M., et al. "Sleepiness, performance and mood state in a group of Mexican undergraduate students." Biological rhythm research 36.1-2 (2005): 9-13.
DOI: 10.6084/m9.figshare.22273042.v1
title: Fast Fashion Tweets (Raw)

description: Our raw dataset with id strings of tweets containing "fast fashion" for our Winter 2023 Digital Humanities 120: Social Media Data Analytics project at UCLA.
DOI: 10.6084/m9.figshare.23306198.v2
title: Effect of visual cortex anodal tDCS on Chinese reading performance in normal peripheral vision.

description: Effect of visual cortex anodal tDCS on Chinese reading performance in normal peripheral vision.
DOI: 10.6084/m9.figshare.23581791.v1
title: RNA-seq Cell Type Fractions

description: Cell type fractions generated from RiMod-FTD RNA-seq data using the Scaden deconvolution algorithm. <br> Method section from the publication: We performed cell type deconvolution on the RNA-seq data using Scaden12. For training we used the human brain training dataset used in the Scaden publication. Each ensembl model was trained for 5000 steps. Cell type deconvolution was then performed with the trained Scaden model on the RNA-seq count data.
DOI: 10.6084/m9.figshare.28646720.v1
title: Datasets for Uniform elementary fibrils in diverse plant cell walls.xlsx

description: Data for "Uniform elementary fibrils in diverse plant cell walls", published in PNAS in 2025 (doi:10.1073/pnas.2426467122).<br>
DOI: 10.15468/dl.sb8hb6
title: Occurrence Download

description: A dataset containing 3361 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rosa laevigata Michx.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 3361 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013480-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jpfwz2
title: Occurrence Download

description: A dataset containing 640 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Ranunculus occidentalis Nutt.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 640 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013481-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.23575737.v1
title: Image Guided In-situ Maskless Lithography Data

description: The data contains experimental results for critical distance measurement and validation of our results for comparing our method with conventional methods. The values are rounded to two decimal points.
DOI: 10.17605/osf.io/saqmc
title: Visual field changes in patients receiving antitubercular therapy

description: Objective
Tuberculosis is a global health challenge with one-third of the world's population infected by it. Although ocular side effects of Anti-tubercular drugs are well known, the patients generally report late in the course which can result in irreversible vision loss. The purpose of this study was to study the visual field changes during the time course of anti-tubercular therapy(ATT).
Methods
A total of 48 patients were studied in this prospective type of study. All patients newly diagnosed with TB and started on treatment were included in the study. Baseline examination which included visual acuity, color vision, anterior segment, IOP, Amsler grid, fundus, and visual field test were performed before starting ATT and at 6-month follow-up.
Results
The mean age of the study population was 35.90 ± 10.2 years. 35 (72.9%) were males and 13 (27.1%) females. 32(66.6%) had pulmonary TB and the rest 16 (33.3%) had extrapulmonary TB. MDR TB was diagnosed in 27 (56.3%) of the patients with the rest 21 (43.8%) being drug sensitive. The baseline examination was normal in all 48 patients. 3(6.3%) out of 45 patients presented with visual complaints after the treatment initiation. Altogether 7 patients out of 48, had visual field defects at the 6-month follow-up. The incidence of visual field defects in our study was 14.6% with the value being significant (0.016). 8.3% had peripheral constriction of visual fields, 2.1% with Severe generalized depression of visual fields and 2.1% with central scotoma. Out of the 45 patients with no visual complaints at 6-month follow-up, 4 (8.33%) showed peripheral field constriction.
Interpretation
Visual field defects caused by ATT can precede clinical symptoms. Visual field evaluation can be an important tool for the early detection of optic neuropathy in patients receiving ATT in clinical settings where Visual evoked potential testing and RNFL-OCT are not available.
Keywords: Mycobacterium tuberculosis, Drug toxicity, DOTS, visual field defects, toxic optic neuropathy, Ethambutol, Linezolid