cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23551908.v1
title: 16 Nwestbladi genome. Raw assembly. Illumina

description: Assembly of the genome sequenced with Hifi of Nemertoderma westbladi. After cleaning the reads, these were assembled with SPAdes (with four kmer lengths (21, 33, 55, 75) and error correction activated)
DOI: 10.6084/m9.figshare.24598458.v1
title: <b>Changes in the functional composition of the understorey across European temperate forests, in relation to changes in canopy openness, changes in N deposition rates and climate warming</b>

description: Dataset used in "Combining multiple investigative approaches to unravel functional responses to global change in the understorey of temperate forests" published in Global Change Biology (accepted nov 2023).Data on changes in the functional composition (cover, CWM plant heigth and CWM specific leaf area) of herbaceous understorey communities in temperate forests as a response to temperature changes, changes in atmospheric deposition rates and changes in light availability. Three datasets are included:<b>Opportunistic resurvey database </b>(opportunistic_resurvey_database.csv): derived from the forestREplot database: a database of forest herb layer resurvey plots, spread across the temperate zones of the globe. The database is used to quantify changes in herb layer composition and forest functioning, and to assess the effects of global environmental changes such as nitrogen deposition and climate change. Original community composition data can be found here: http://forestreplot.ugent.be.<b>Orthogonally-distributed resurvey study </b>(pastforward_resurvey_study.csv): based on a distributed understorey resurvey study carried out in the frame of ERC project PASTFORWARD (see http://pastforward.ugent.be).<b>Manipulative global-change experiment </b>(pastforward_mesocosm_experiment.csv):<b> </b>based on a mesocosm experiment (understorey communities, planted in plastic trays and dug into the soil of a temperate forest in Belgium (Aelmoeseneie forest), and exposed to warming, light addition and N fertilization) set up in the frame of ERC project PASTFORWARD (see http://pastforward.ugent.be).
DOI: 10.6084/m9.figshare.27013288.v1
title: Alternative splicing (AS) and alternative polyadenylation (APA) sites of <i>Salix brachista</i>

description: Alternative splicing (AS) and alternative polyadenylation (APA) sites were identified by full-length transcript data of <i>Salix brachista</i>.
DOI: 10.6084/m9.figshare.5558527.v1
title: Sample preparation, transcriptome and 16S rRNA sequencing, and analysis results

description: Five files are included in this dataset, which describe the phenotype scoring of rabbits, RNA quality, 16s rRNA amplicon content, count of raw and clean sequencing reads, and mapping results of reads against the reference genome for each sample (sample_sequencing_mapping.xlsx), the chromosome information (gene_information.txt) and expression levels (gene_quantification.txt) for these assembled genes from RNA-Seq, and the taxonomically annotated results (otu_annotation.txt) and estimated abundances (otu_abundances.txt) of OTUs.
DOI: 10.6084/m9.figshare.26089302.v1
title: HiGTS_2017s1

description: HiGTS is a high temporal resolution global gridded dataset of human thermal stress metrics. Derived using climate variables from ERA5-Land and ERA5, the HiGTS consists of hourly gridded maps of Universal Thermal Climate Index (UTCI), Universal Thermal Stress (UTS), and daily Thermal Stress Duration (TSD) at 0.1° × 0.1° spatial resolution over the global land surface.HiGTS_2017s1 contains the data from January 1, 2017 to March 31, 2017.
DOI: 10.6084/m9.figshare.3984474.v2
title: An Interview with Manuel Salmeron-Sanchez

description: Blog article featured on Centre for Cell Engineering's Website (www.cceuog.co.uk) concerning an interview with Manuel Salmeron-Sanchez, professor at the University of Glasgow. Our interview concerns bone engineering using growth factors for which Manuel recently received a £2.8M grant from the charity Find a Better Way.
DOI: 10.17632/5kmhz66tkp
title: Data for: A city-level coal-related mercury emissions inventory for China in 2010

description: The dataset includes coal consumption and mercury emissions for 182 Chinese cities。
DOI: 10.48420/21688199.v1
title: ThRAll Challenge data set and associated coding information

description: As part of the European Food Safety Authority funded project (GP/EFSA/AFSCO/2017/03) entitled “Detection and Quantification of Allergens in Foods and Minimum Eliciting Doses in Food-Allergic Individuals” (ThRAll) an online database was built using REDCap (Research Electronic Data Capture). This is a web application for building and managing online surveys and databases which is free to use for REDCap consortium members an electronic clinical record system. The database comprises four instruments as follows which are designed to capture various different types of data: <em><strong>(1)</strong></em> <em><strong>Protocol:</strong></em> this collates data on the allergenic food used for a food challenge, the matrix it was delivered in, the ingredients used to make the matrix, type of challenges study (e.g. double blind placebo controlled food challenge, open challenge, single dose challenge or one using interspersed doses), the dose progression, dosing interval and stopping criteria. <em><strong>(2) Demographics:</strong></em> this captures the data source, research ethics committee number and information on how the challenges are coded regarding whether objective or subjective symptoms were recorded, the country the data originated from, gender, age and BMI of study subject. <em><strong>(3) Challenge day:</strong></em> this captures data on a challenge day and the symptoms recorded during the dose progression and their time of development. This instrument is suitable for upload of clinical data collected during a food challenge. <em><strong>(4) Threshold dose:</strong></em> this captures data that is only available in a summarised form where the lowest observed adverse effect level (LOAEL) and no observed adverse effect level (NOAEL) is provided. This is frequently the case for published data. <br> The annoymised data collated through the project is provided as an annoymised csv file together with the associated REDCap data dictionary file and code book. A coding system was also developed utilising a combination of SNOMED and FoodEx2 codes to support harmonisation of such data. <br>
DOI: 10.6084/m9.figshare.28291820.v1
title: MetS and coffee consumption

description: There is minimal information in the Saudi population about the relationship between coffee consumption and metabolic syndrome (MetS) components. Furthermore, in Saudi Arabia, studies are being undertaken on coffee consumption and MetS risk factors, but not on MetS components. Hence, this study aimed to assess the relationship between coffee consumption and MetS components among Saudi adults at King Abdulaziz University hospital.
DOI: 10.17632/43sbvvh7g4
title: Thematic analysis result （LDA results and community network results）in construction and demolition waste management

description: The anlaysis result and node data for research. The LDA analysis result provide the topic information of research and used as node data in the lateral thematic model. The edge data is provide by word2vec model. Combining with edge data and node data, the social network can be conducted and visualized.
DOI: 10.17632/pbjw3cfvf4
title: The impact of external shocks on volatility persistence and market efficiency of the foreign exchange rate regime: evidence from Malawi

description: Monthly data on volatility of the forex market and domestic economic variables.
DOI: 10.17632/z4bbj9rcwd
title: ECG data related to 30-s seated and 30-s standing for 5P-Medicine project

description: This data is related to a project for the implementation of technologies for 5P-Medicine related to cardiovascular diseases. It includes ECG data acquired from 219 individuals during 30-s seated and 30-s standing.
DOI: 10.6084/m9.figshare.19722082.v1
title: ds01.xlsx

description: The horizotal displacement measured in the field along Jiujing-Bantan Fault
DOI: 10.17632/cxkzb8mr8b
title: Phenotypic, Genotypic and Environmental Data: Non-linear kernels, dominance, and envirotyping data increase the accuracy of genome-based prediction in multi-environment trials

description: The phenotypic data consisted of grain yield (ton/ha) records collected from two data sets of tropical maize hybrids in Brazil (HEL and USP). HEL includes a set of 247 maize hybrids from a core of 452 F1 hybrids obtained by crossing 106 inbred lines. Those hybrids were evaluated in 2015 in five sites in Brazil (S1-S3 in the southern region and S4-S5 in the mid-west region). USP includes a set of 570 single-hybrids evaluated across eight environments (E1-E8), involving an arrangement of 2 locations, 2 years, and 2 nitrogen levels. For both sets, the parent lines were genotyped with an Affymetrix Axiom Maize Genotyping Array of 616 K SNPs (Single Nucleotide Polymorphisms) (Unterseer et al. 2014). Then, standard quality controls (QC) were applied to the data, by removing markers with a Call Rate ≥ 0.95. After this process, the remaining missing data in the lines were imputed with the Synbreed package (Wimmer et al. 2012) using the algorithms from the Beagle 4.0 software (Browning and Browning 2008). Finally, markers with a Minor Allele Frequency (MAF) of ≤ 0.05 were removed, resulting in a total of 52,811 high-quality SNPs for HEL and 54,113 high-quality SNPs for USP. This envirotyping pipeline used in this study were based on the core of functions present in the R package EnvRtype (available at https://github.com/allogamous/EnvRtype [verified 05 July. 2020]). We used 5 time intervals for the function W.matrix() described in the package webpage: (0,14,35,65,90,120). Includes a total of 248 envirotype covariables was obtained for USP and 243 for HEL.
DOI: 10.6084/m9.figshare.25499305.v1
title: Ottelai_alismoides.annotations

description: Genome assembly of Ottelia alismoides, a multiple-carbon utilization aquatic plant
DOI: 10.6084/m9.figshare.26884480.v2
title: Gene and Peak Coordinates

description: Refer to README for more details.Genomic coordinates for six datasets from the iPSCORE QTL manuscript; ATAC-seq peaks in bed file format (iPSC, CVPC, and PPC), H3K27ac ChIP-seq peaks in bed file format (iPSC and CVPC) and Gencode gene coordinates (hg38 build).
DOI: 10.6084/m9.figshare.7479416.v1
title: Database of surveyed literature in "Not-so-supervised: a survey of semi-supervised, multi-instance and transfer learning in medical image analysis"

description: Papers surveyed in https://arxiv.org/abs/1804.06353
DOI: 10.17632/mxcd27nh33
title: Dataset Makanan Khas Daerah Kep. Bangka Belitung

description: The typical food of Bangka Belitung itself which is quite widely known by the Indonesian people at large, namely Martabak Bangka, where this food may already be familiar, and is marketed in many provinces in Indonesia because of its distinctive and delicious taste for consumption by the Indonesian people's tongue. However, apart from Martabak Bangka, the Bangka Belitung Islands also have other regional foods that are no less delicious, such asBelacan, Kretek, Lakso, Lempah Kuning, Mie Koba, Otak-otak, Rusip, Sambelingkung, and Bong Li Piang Cake. The variety of special foods owned by the Bangka Belitung region is certainly a potential that can be used in advancing culinary tourism and introducing Bangka Belitung Islands food more and more widely to the public, especially in Indonesia.
DOI: 10.6084/m9.figshare.12495914.v2
title: Species diversity and seasonal variation in zooplankton in the Sanmenxia Reservoir characterized by the 18S rRNA and COI metabarcoding methods

description: Species diversity and seasonal variation in zooplankton in the Sanmenxia Reservoir characterized by the 18S rRNA and COI metabarcoding methods.
DOI: 10.17632/58v29j352j
title: Data for: Meta-analysis of risk factors for canine leptospirosis

description: Search results and datasets used for the meta-analysis.
DOI: 10.17632/d25ntjkwmz
title: Enhanced Quality of Life for Individuals in Early-stage Parkinson's Disease - A Three-month Customized Yoga Therapy Intervention.

description: Background: Parkinson's disease (PD) is a progressive neurodegeneration of happy hormone dopamine-producing neurons of the brain. This degeneration or absence of the dopamine neurons hinders the Activity of Daily Living (ADL) and Quality of Life (QoL), which results in a poor lifestyle and vice versa. The world also is confronted with so-called modern diseases, and nowadays, even minor stress can develop into a chronic neurological disorder that can affect everyday activities. The best method for boosting our entire life is to incorporate our traditional yoga practice in our daily life. Through yoga, regardless of the specific disease, we restore, rectify, and improve individuals who suffer from Parkinson’s Disease (PD) balance, quality of life, sleep, and motor functions. This interventional study aims to measure the efficacy of a customized yoga therapy method in improving QoL. 

Methods: A three-month yoga therapy intervention designed to improve the QoL of the PD population. Fifteen participants' random data from the study with one hour of yoga therapy five days a week for 3 months is given below. A three-month yoga therapy intervention was conducted on those living on the early stages scale, as per Hohen and Yahr of PD. Customized Yoga Therapy (CYT) interventions were provided daily to the participants' experimental group. Incorporating yoga knowledge into daily life requires more conscious effort and awareness, enabling safer choices and reducing the adverse effects of medications and the PD condition itself.

Outcomes: This clinical trial aims to improve the QoL, using the UPDRS III, PDQ-39, SCOPA to enhance sleep and the BBS (Berg Balance Scale) for daily activities.

Result : Yoga is a safe, affordable, healthy practice that can correct lifestyle and serve as a non-pharmacological strategy in treating Parkinson's Disease. This clinical trial of yoga experimentation among the Parkinson's disease population significantly enhanced the Quality of Life by improving overall health, balance, quality of life, sleep, and motor functions of individuals with early-stage Parkinsonism.
DOI: 10.6084/m9.figshare.14350604.v1
title: Jäck_et_al_Agronomy2021_data.xlsx

description: Data underlying the figures in the following paper:Jäck O, Ajal J, Weih M. Altered N Availability in Pea-Barley Sole- and Intercrops Changes Dominance of Two Nitrophilic Weed Species. <i>Agronomy </i><b>2021</b>.<br>
DOI: 10.6084/m9.figshare.19713715.v1
title: Supplementary Material for: Validation of the Canadian TIA Score to Predict Subsequent Stroke Risk in Chinese TIA Patients

description: <b><i>Background and Objectives:</i></b> The Canadian TIA Score has been verified as a good predictive tool for subsequent stroke risk in Caucasian patients; however, it had insufficient external verification of other races. We aimed to validate the Canadian TIA Score in Chinese patients and compared it with ABCD<sup>2</sup> for subsequent stroke risk after transient ischemic attack (TIA). <b><i>Methods:</i></b> The Third China National Stroke Registry (CNSR-III) was a nationwide, multicenter prospective registry recruiting consecutive patients with acute ischemic stroke or TIA within 7 days of the onset from August 2015 to March 2018. The Canadian TIA Score was verified in patients diagnosed with TIA from the CNSR-III (<i>N</i> = 1,184). The outcomes were subsequent stroke at 7 days, 14 days/discharge, 3 months, and 1 year. Outcomes were recorded by face-to-face assessment or telephone interview. The prognostic performance of the scoring system was assessed by the area under the receiver operator characteristic curve (AUC). <b><i>Results:</i></b> Of 1,184 TIA patients (mean [IQR] age, 61.00 [53.00–69.00] years; 413 women [34.88%]), there were 40 patients (3.38%) having subsequent stroke within 7 days, 45 (3·80%) within 14 days/hospitalization, 66 (5·57%) within 3 months, and 100 (8·45%) within 1 year. The Canadian TIA Score (AUC 0 63–0·68) seemed to be a better prognostic score of stroke risk than the ABCD<sup>2</sup> score (AUC 0·61–0·62), although no significant differences were noted. In the subgroup of atypical TIA, the Canadian TIA Score showed significantly stronger predictivity than the ABCD<sup>2</sup> score within 7 days (0.80 [0.62–0.98] vs. 0.52 [0.30–0.73]; difference in AUC, 0.28 [0.03–0.53]; <i>p</i>, 0.026), and marginal significantly stronger predictivity within 1 year (0.71 [0.61–0.80] vs. 0.58 [0.48–0.68]; difference in AUC, 0.12 [−0.01 to 0.25]; <i>p</i>, 0.06). <b><i>Conclusion:</i></b> The Canadian TIA Score might be a better prognostic score than the ABCD<sup>2</sup> score for post-TIA stroke risk, especially in patients with atypical TIA.
DOI: 10.6084/m9.figshare.25878871.v3
title: crossdocked_pocket10_with_protein.tar.gz

description: This is one of the datasets used in the paper "A Deep Learning Approach for Rational Ligand Generation with Property Control via Reactive Building Blocks". It utilizes the 3D-Generative-SBDD's index file, which is part of the raw data for the CrossDocked2020 set.This archive merges the original CrossDocked2020 protein PDB files into a subset provided by 3D-Generative-SBDD. We have repackaged it to facilitate readers in reproducing the experiments. This dataset is provided "as is" without any warranty.
DOI: 10.17632/sf4gwczxjd
title: Data for: The Effect of Pollution on Crime: Evidence From Data on Particulate Matter, Wildfire Smoke, and Ozone

description: This is the data and do file for the first round of review. We will gladly provide updated data and code if the journal accepts our article. The data and code will also be posted on the Colorado State University website.
DOI: 10.17632/wc5h8mzygr
title: Measuring HPV vaccination uptake and willingness to be vaccinated and associated factors among university students in Italy

description: The dataset was used in a cross-sectional study aimed to provide insight into potential predictors of HPV vaccination uptake and willingness to get vaccinated. The study was carried out in a month, between March and April 2022 and involved University students aged from 18-30 years old, attending University “Magna Græcia” of Catanzaro. An anonymous survey was sent via institutional email through a URL code consisting of four sections. The first section gathered information about the participants’ sociodemographic characteristics. The second section investigated vaccine hesitancy tested with the adult Vaccine Hesitancy Scale (aVHS) and the beliefs on vaccination decision-making. The third section investigated adherence to recommended (i.e., HPV) and mandatory (i.e., dTap-IPV) vaccinations during adolescence, and among unvaccinated responders, willingness to receive missed vaccinations and related reasons. The final section examined sources of information about vaccinations, related satisfaction, and the need for additional information on the topic.
DOI: 10.6084/m9.figshare.25493452.v1
title: Raw data file for The integral role of de novo lipogenesis in the preparation for seasonal dormancy

description: Animals can alter their body compositions in anticipation of dormancy to endure seasons with limited food availability. Accumulation of lipid reserves, mostly in the form of triglycerides (TAGs), is observed during the preparation for dormancy in diverse animals, including insects (diapause) and mammals (hibernation). However, the molecular mechanisms associated with the accumulation of substantial fat stores in preparation for animal dormancy remain poorly studied. In the broadest sense, lipid reserves can be accumulated in two ways: the animal either receives lipids directly from the environment or converts the sugars and amino acids present in food to fatty acids through <i>de novo</i> lipogenesis and then to TAGs. Here, we show that preparation for diapause in the Colorado potato beetle (<i>Leptinotarsa decemlineata</i>) involves orchestrated upregulation of genes involved in lipid metabolism with an expression peak in 8<sup>th</sup> and 10<sup>th</sup> day-old diapause-destined insects. The regulation at the gene expression level was associated with the accumulation of substantial fat stores. Interfering with steps in lipid accumulation during the diapause preparatory phase resulted in the prolongation or shortening of the diapause preparatory phase duration, depending on the targeted step. The knockdown of <i>de novo</i> lipogenesis enzymes (<i>ACCase </i>and <i>FAS-1</i>) prolonged the preparatory phase, while the knockdown of fatty acid transportation genes shortened the preparatory phase. Our findings suggest a model in which the insects sense their fat reserve status and dynamically decide when to transition from the preparation phase into diapause, depending on the progress in lipid accumulation through <i>de novo</i> lipogenesis.<br>
DOI: 10.6084/m9.figshare.28541660.v1
title: Cross-kingdom comparative genomics and phylogenetics of aromatic catabolic enzymes in bacteria and fungi

description: This dataset contains raw protein sequences and analyzed data from our study in comparative genomics and phylogenetics of aromatic catabolic enzymes in bacteria and fungi. In this study, we retrieved protein sequences from hundreds of bacteria and fungal genomes from public databases. To detect aromatic catabolic enzymes in each genome, we identified IPR domains from reference enzymes validated in biochemical studies. Genome-wide IPR scanning was performed for each genome, and then we examined the abundance of each aromatic catabolic enzymes through the presence of proteins with proxy IPR domains. Protein sequences with the proxy domains for aromatic catabolic enzymes were selected for association analyses (nutrition/lineage) and phylogenetic analyses.This dataset is associated with our published article in Nature Ecology and Evolution (Kijpornyongpan et al., 2025 Title "Cross-kingdom comparative genomics reveal the metabolic potential of fungi for lignin turnover in deadwood"). Details of files in this dataset are described as follows:Bacterial_protein_sequences.zip and Fungal_protein_Sequences.zip contain raw protein sequences from 255 bacterial genomes and 317 fungal genomes. These genomes were previously published and data are available in public database. More information of genomes used in this study can be found in Supplementary Information of the research article.Bacterial_IPRscan_5.44-79_annotation.zip and Fungal_IPRscan_5.44-79_annotation.zip contain results from genome-wide IPR domain searching through Interproscan 5.44-79.Bacterial_eggNOG_annotation and Fungal_eggNOG_annotation contain genome-wide gene annotation results through eggNOG 4.5 and eggNOG-mapper 1.0. Gene orthology data are informative for phylogenomic reconstruction and for retrieving specific sequences for each type of aromatic catabolic enzymes.Reference_enzymes.zip contains protein sequences of aromatic catabolic enzymes previously reported from biochemical studies.CrossKingdomGenomics_Phylogenomics.zip contains raw protein sequences, and gene presence/absence data used for species tree phylogenomic reconstruction.CrossKingdomComparativeGenomics_scripts.zip contains customized scripts in R and Perl used for fetching results from Interproscan and eggNOG-mapper, as well as used for data analyses (enzyme distribution and association analyses).SpecificEnzymes_Phylogeny.zip contains selected protein sequences from all studied genomes for each type of enzyme. These sequences were used for phylogenetic analyses, and SignalP analyses.Kijpornyongpan_2025_Supplementary.zip contains Supplementary Information that are associated with the publication.<br>