cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5290009.v1
title: Histological Sequences of Long Bone Development in the New Zealand White Rabbits

description: Long bone development occurred through endochondral ossification. The current study investigated the main histological changes associated with the development of humerus from the New Zealand white rabbits. The upper limb or humerus during embryonic (12, 14, 15, 16, 18, 21, 24 and 27 days) and neonatal (3 and 7 days) development was processed for light microscopy. Three stages preceded endochondral ossification; limb bud (mesenchymal cells), cartilage primordia (mesenchymal condensation and differentiation into chondrocytes) and cartilage template (organization of chondrocytes into proliferative and hypertrophic zones) by 12, 14 and 15 days, respectively. At day 16, cartilage template elongated forming a cartilaginous diaphysis of the prospective humerus. At day 18, cartilaginous epiphyses were formed. Medullary cavity was established by day 21 with no signs of calcification in the bone collar. Primary ossification center appeared within the diaphysis at day 24 of embryonic development. Secondary ossification centers were seen within the epiphyses by day 3 of neonatal development. Two types of cartilage canals were investigated; short epiphyseal canals appeared from day 21 and long transphyseal canals appeared from day 27. At day 7 of neonatal development, the cartilage of the humerus was limited in two places; articular epiphyseal growth cartilage between articular surface and secondary ossification center, epiphyseal physeal growth cartilage between the secondary and primary ossification centers. The current study summarized the main histological stages of development of rabbit humerus. These results should be considered in molecular studies of endochondral bone formation <br><br>
DOI: 10.6084/m9.figshare.5290045.v1
title: Mathematica notebook with simulation methods

description: This notebook includes the simulation model for the paper "Introgression makes waves in inferred histories of effectivepopulation size". In the present state, the key elements of the simulations are expressed in functions, with the simulation of population structure with gene flow or introgression in the function "funkycoalescence". <br> These functions are insufficiently commented as they stand, and comments need to be added. The function incorporates the coalescence approach as described by Hudson (1990), with mutation (added as "rate") and migration (or instantaneous separation into subpopulations).
DOI: 10.6084/m9.figshare.5290063
title: Exposition to human influence - ArcGIS toolbox and raster for Slovakia- OLD VERSION

description: "Exposition to human influence" is a new spatial variable for the land use and land cover change modelling, approximating the intensity of human influence on the landscape. The “exposition” simulates the dilution of human activity from settlements (source points with information about population size or other human activity quantification) to landscape, based on the accessibility. Exposition to a settlement is directly proportional to its population size and inversely proportional to the cost distance from this settlement. Cost distance uses sine of the slope angle as a cost raster to simulate a barrier effect of the terrain. Overall exposition to human influence sums all expositions to individual settlements in a region. Resulting raster field created for Slovakia achieves an observable resemblance to the actual intensity of land use, derived from Corine Land Cover map. The ArcGIS tool developed for the exposition computation is supplemented.
DOI: 10.6084/m9.figshare.5290015.v2
title: Morphological and Biochemical Adaptive Changes Associated.pdf

description: Background The morphological and biochemical impact of a short-period of starvation on Japanese quail was investigated. Materials and methods Ten adult male Japanese quail were divided into two groups; control fed and starved. The control-fed group was offered food and water ad libitum and the starved group was subjected to a short-period of food deprivation. After 2.5 days, the serum was obtained and different parameters including the total protein, AST, ALT, triglyceride, HDL, LDL, creatinine and urea were assessed. Gastrointestinal tract, stomach and liver were excised and their masses were estimated. Paraffin and resin embedded sections from the proventriculus, gizzard, liver, duodenum, kidney and pancreas were examined with a light microscopy. Results Significant decreases in the masses of body, gastrointestinal tract, stomach and liver of the starved group were recorded. The liver and duodenum were the most affected organs. The liver showed depletion of glycogen, vacuolation, hyperemia and cellular infiltrations. Duodenal villi showed degenerative changes in lamina epithelialis and cellular infiltrations in the lamina propria. Biochemical analysis revealed a decreased level of total protein, AST and ALT, increased cholesterol, triglycerides and LDL, and unchanged HDL, urea and creatinine by starvation. Conclusion The current study described in details the effect of short time starvation on quail organs. Time-point adaptive responses of male quail to starvation and refeeding on quail organs will be investigated in future studies <br><br>
DOI: 10.6084/m9.figshare.5290063.v1
title: Exposition to human influence - ArcGIS toolbox and raster for Slovakia

description: "Exposition to human influence" is a new spatial variable for the land use and land cover change modelling, approximating the intensity of human influence on the landscape. The “exposition” simulates the dilution of human activity from settlements (source points with information about population size or other human activity quantification) to landscape, based on the accessibility. Exposition to a settlement is directly proportional to its population size and inversely proportional to the cost distance from this settlement. Cost distance uses sine of the slope angle as a cost raster to simulate a barrier effect of the terrain. Overall exposition to human influence sums all expositions to individual settlements in a region. Resulting raster field created for Slovakia achieves an observable resemblance to the actual intensity of land use, derived from Corine Land Cover map. The ArcGIS tool developed for the exposition computation is supplemented.
DOI: 10.6084/m9.figshare.5289841
title: Antibiotic susceptibility of bacterial isolates.xlsx

description: Pathogens isolated from the groundwater showed resistance to antibiotics, namely ceftriaxone, doxycycline and nalidixic acid. However, they were sensitive to chloramphenicol, ciprofloxacin, norfloxacin, and tetracycline.
DOI: 10.6084/m9.figshare.5289943
title: Evaluation of the effects of different stocking densities on growth and stress responses of juvenile hybrid groupers (♀Epinephelus fuscoguttatus × ♂Epinephelus lanceolatus) in recirculating aquaculture systems

description: Effect of different stocking densities on juvenile hybrid grouper in RAS
DOI: 10.6084/m9.figshare.5289976
title: Histogenesis of the stomach of the pre-hatching quail: a light microscopic study

description: The current study conducted a careful description of the histological events during the embryonic development of quail stomach. Daily histological specimens from the quail stomach from day 4 to day 17 post incubation were examined by light microscopy. The primitive gut tube of the embryonic quail appeared at day 4 post incubation. The gut tube consisted of an endodermal epithelium of pseudostratified type, surrounded by splanchnic mesenchyme. The prospective glandular epithelium invaginated at day 5 in the proventriculus and gradually developed to prospective proventricular glands. The muscular coat became distinguished at day 7 and day 8 in the proventriculus and gizzard, respectively. Transformation into simple columnar epithelium occurred in both proventriculus and the gizzard at day 12. The gizzard epithelium gave rise to tubular invaginations also at day 12. Canalization of the gizzard tubular glands was recognized at day 14. By day 15, the proventricular surface epithelium invaginated in a concentric manner around a central cavity to form immature secretory units that contained inactive oxyntico-peptic cells. The mucosal folding in the gizzard appeared at day 15 to form plicae and sulci. The wall of the proventriculus and gizzard at day 17 acquired histological features of post-hatching birds
DOI: 10.6084/m9.figshare.5289943.v1
title: Evaluation of the effects of different stocking densities on growth and stress responses of juvenile hybrid groupers (♀Epinephelus fuscoguttatus × ♂Epinephelus lanceolatus) in recirculating aquaculture systems

description: Effect of different stocking densities on juvenile hybrid grouper in RAS
DOI: 10.6084/m9.figshare.5289604.v2
title: Research data supporting "Microbial mineralization of cellulose in frozen soils"

description: Research data supporting "Microbial mineralization of cellulose in frozen soils". The files uploaded contain solid state and liquid state NMR data in TOPSPIN, Bruker format. A word document contains the NMR_data_key information.<br>An excel file with GC data for the CO2An Excel file summarizes the data from NMR and GC experiments and is the base of the figures generated for the manuscript.
DOI: 10.6084/m9.figshare.5289841.v1
title: Antibiotic susceptibility of bacterial isolates.xlsx

description: Pathogens isolated from the groundwater showed resistance to antibiotics, namely ceftriaxone, doxycycline and nalidixic acid. However, they were sensitive to chloramphenicol, ciprofloxacin, norfloxacin, and tetracycline.
DOI: 10.6084/m9.figshare.5289604.v1
title: Research data supporting "Microbial mineralization of cellulose in frozen soils"

description: Research data supporting "Microbial mineralization of cellulose in frozen soils". The files uploaded contain solid state and liquid state NMR data in TOPSPIN, Bruker format. A word document contains the NMR_data_key information.<br>An excel file with GC data for the CO2An Excel file summarizes the data from NMR and GC experiments and is the base of the figures generated for the manuscript.
DOI: 10.6084/m9.figshare.5289616.v1
title: Educational Value of Systematic Mapping Studies: A Replication. Complementary material.

description: Complementary material (Tables) for the reserach paper entitled:<br>Educational Value of Systematic Mapping Studies: A Replication
DOI: 10.6084/m9.figshare.5288329
title: Measurements taken on sheep and sheep or goat bones from Expansion of the known distribution of Asiatic mouflon (Ovis orientalis) in the Late Pleistocene of the Southern Levant

description: Measurements taken on sheep and sheep or goat bones from Shubayqa showing the average LSI of these measurements
DOI: 10.6084/m9.figshare.5288338
title: The steps of preprocessing and phylotype analysis using Mothur program for male skin

description: The preprocessing step and phylotype analysis of Mothur including alpha and beta analysis was used in male skin project.<br>
DOI: 10.6084/m9.figshare.5288332
title: The number of sequences in the otus of bacterial phyla and genera among 10 groups of male skin

description: Raw data represent the number of sequences in the OTUs of bacterial phyla and genera among 10 groups. Data set were from phylotype analysis in Mothur (classify.otu).<br>
DOI: 10.6084/m9.figshare.5288323
title: Number of identified specimens according to element for gazelle and caprines from Expansion of the known distribution of Asiatic mouflon (Ovis orientalis) in the Late Pleistocene of the Southern Levant

description: Number of identified specimens for the main skeletal elements of gazelle and caprines
DOI: 10.15131/shef.data.5288311
title: Models, data and supplementary material for 'Muscle recruitment strategies can reduce joint loading during level walking'

description: This repository contains the model, data and supplementary material for the paper 'Muscle recruitment strategies can reduce joint loading during level walking' by van Veen, Montefiori, Modenese, Mazzà and Viceconti.<br>README files that explain the file contents are provided. <br><br><b>Ethical approval</b><br> <i>p01</i>: Ethical approval for the data collection was provided by the University Research Ethics Committee at the University of Sheffield. <br> <i>p02</i>: The original dataset was provided through the Knee Grand Challenge (Fregly et al., 2012). <br> <i>p03</i>: The data were previously collected as part of the MD-Paedigree project (EC 7th FP, ICT Programme, Ref. No. 600932).<br><i>p04</i>: The data were provided as part of the MultiSim project (EPSRC Frontier Engineering Awards, Ref. No. EP/K03877X/1) for which the data collection was approved by the NHS research ethics committee.
DOI: 10.6084/m9.figshare.5288317
title: Measurements taken on distal condyle of sheep metapodials from Shubayqa from Expansion of the known distribution of Asiatic mouflon (Ovis orientalis) in the Late Pleistocene of the Southern Levant

description: Measurements on sheep metapodials from Shubayqa used in Figure 3 to seperate sheep and goat (mm)
DOI: 10.15131/shef.data.5288311.v1
title: Models, data and supplementary material for 'Muscle recruitment strategies can reduce joint loading during level walking'

description: This repository contains the model, data and supplementary material for the paper 'Muscle recruitment strategies can reduce joint loading during level walking' by van Veen, Montefiori, Modenese, Mazzà and Viceconti.<br>README files that explain the file contents are provided. <br><br><b>Ethical approval</b><br> <i>p01</i>: Ethical approval for the data collection was provided by the University Research Ethics Committee at the University of Sheffield. <br> <i>p02</i>: The original dataset was provided through the Knee Grand Challenge (Fregly et al., 2012). <br> <i>p03</i>: The data were previously collected as part of the MD-Paedigree project (EC 7th FP, ICT Programme, Ref. No. 600932).<br><i>p04</i>: The data were provided as part of the MultiSim project (EPSRC Frontier Engineering Awards, Ref. No. EP/K03877X/1) for which the data collection was approved by the NHS research ethics committee.
DOI: 10.6084/m9.figshare.5288296
title: A SAR-based mechanistic study on the combined toxicities of sulfonamides and quorum sensing inhibitors on <i>Escherichia coli</i>

description: Quorum sensing inhibitors (QSIs) are promising alternatives to antibiotics, but they are discharged into the environment after their use cycle. This poses joint effects on the organisms in the environment. Therefore, it is of great importance to study the combined toxicities of QSIs and antibiotics. In this study, we investigated the single and combined toxicities of four potential QSIs and 11 sulfonamides (SAs) on <i>Escherichia coli.</i> The results revealed that the single toxicities of SAs were greater than those of QSIs, and the toxicities were found positively related to the binding energies (<i>E</i><sub>bind</sub>) with their target proteins, for both antibiotics and QSIs. The combined toxicities of the binary mixtures were observed to be either antagonism or addition. The antagonism could be explained by the phenomenon that QSIs changed SAs molecules into ionic forms, preventing the SA molecules entering the bacteria. Furthermore, it was found that the ratios of the effective concentration (the actual concentration involved in the interaction with the proteins) in the antagonistic cases were higher than those in the additive cases. This study would benefit both rational use of the drug combination and ecological risk assessment of antibiotics and QSIs in the real environment.
DOI: 10.6084/m9.figshare.5288296.v1
title: A SAR-based mechanistic study on the combined toxicities of sulfonamides and quorum sensing inhibitors on <i>Escherichia coli</i>

description: Quorum sensing inhibitors (QSIs) are promising alternatives to antibiotics, but they are discharged into the environment after their use cycle. This poses joint effects on the organisms in the environment. Therefore, it is of great importance to study the combined toxicities of QSIs and antibiotics. In this study, we investigated the single and combined toxicities of four potential QSIs and 11 sulfonamides (SAs) on <i>Escherichia coli.</i> The results revealed that the single toxicities of SAs were greater than those of QSIs, and the toxicities were found positively related to the binding energies (<i>E</i><sub>bind</sub>) with their target proteins, for both antibiotics and QSIs. The combined toxicities of the binary mixtures were observed to be either antagonism or addition. The antagonism could be explained by the phenomenon that QSIs changed SAs molecules into ionic forms, preventing the SA molecules entering the bacteria. Furthermore, it was found that the ratios of the effective concentration (the actual concentration involved in the interaction with the proteins) in the antagonistic cases were higher than those in the additive cases. This study would benefit both rational use of the drug combination and ecological risk assessment of antibiotics and QSIs in the real environment.
DOI: 10.6084/m9.figshare.5288251
title: How does emotional intelligence relate to adolescents’ interpretation of cues for disgust?

description: This study investigated the relationship of emotional intelligence and age to adolescents’ (11–17 years) free labelling responses to proposed facial expressions and situations for disgust. Emotional intelligence continues to develop throughout adolescence and may provide needed cognitive support for linking the disgust face to the disgust script. Emotional intelligence, specifically, regulating one’s own and others emotions, and age predicted adolescents’ labelling of disgust facial expressions (but not situations) as <i>disgusted.</i> Older adolescents (15–17 years) were more likely to label disgust faces as <i>disgusted</i> than were younger adolescents (11–14 years) – an effect not found for disgust situations. Labelling the disgust face as <i>disgusted</i> continues to increase until late adolescence. The addition of the disgust face to the disgust script occurs in late adolescence and it is related to the cognitive abilities associated with emotional intelligence.
DOI: 10.6084/m9.figshare.5288236
title: Semiconductor Laser with OpticaI Feedback

description: Output power time series from an edge-emitting, multiple quantum well 830nm semiconductor laser subject to optical feedback. Time series recorded for different combinations of optical feedback level and laser injection current. Detection bandwidth 4 GHz and sampling rate 20 GSa/s.Full details here http://research.science.mq.edu.au/photonics-dynamical-systems/our-research/semiconductor-lasers-with-optical-feedback/bulk-optic-4-ghz-bw/This data set was recorded from an experimental semiconductor laser subject to optical feedback on 13/08/12. Laser wavelength ~ 830nm. External cavity round trip time 4.5ns. During the experiment, 2 system parameters were varied: the optical feedback level and laser injection current. - Optical feedback was varied by changing the RF power to an acousto-optic modulator (AOM) which varies the amount of laser power transmitted in the 0th order beam. A voltage between 0V-1V corresponds to maximum transmission (0V) and minimum transmission (1V). The actual power transmitted by the AOM is not a linear relationship with voltage. Relative feedback level can be approximated from the reduction in laser threshold. - Laser injection is controlled by directly varying the current supply to the device (Profile ITC510 Laser Diode Combi-controller). Laser was held at a constant 25C. The dataset contains 88,101 files containing output power time series recorded from the laser using a fast photodiode (Discovery Semiconductors DCS30S 22GHz) and 4GHz realtime oscilloscope (Agilent 54854A) for different settings of: - Injection (251 values = 45mA to 70mA in 0.1mA steps) - Feedback (351 values from 0.45V to 0.8V in 0.001V steps) The filenames consist of the AOM and INJ values at which the data was recorded: e.g. AOM_0.642V_INJ_45.2mA.h5 : feedback = 0.642 V, injection = 45 mA Each hdf5 file consist of a single dataset called 'TimeSeries'. This contains a time series of amplitude values measured as the voltage across the 50ohm oscilloscope input. Time series were sampled at 20GSamples/s (50ps per data point) and contain 20,000pts for a total record length of 1microsecond.<br>ReferenceJ. P. Toomey and D. M. Kane, 'Mapping the dynamic complexity of a semiconductor laser with optical feedback using permutation entropy,' Optics Express 22 (2), 1713-1725 (2014).<br><br>
DOI: 10.6084/m9.figshare.5288251.v1
title: How does emotional intelligence relate to adolescents’ interpretation of cues for disgust?

description: This study investigated the relationship of emotional intelligence and age to adolescents’ (11–17 years) free labelling responses to proposed facial expressions and situations for disgust. Emotional intelligence continues to develop throughout adolescence and may provide needed cognitive support for linking the disgust face to the disgust script. Emotional intelligence, specifically, regulating one’s own and others emotions, and age predicted adolescents’ labelling of disgust facial expressions (but not situations) as <i>disgusted.</i> Older adolescents (15–17 years) were more likely to label disgust faces as <i>disgusted</i> than were younger adolescents (11–14 years) – an effect not found for disgust situations. Labelling the disgust face as <i>disgusted</i> continues to increase until late adolescence. The addition of the disgust face to the disgust script occurs in late adolescence and it is related to the cognitive abilities associated with emotional intelligence.
DOI: 10.6084/m9.figshare.5288227
title: Optically Injected Solid State Laser Experiment Dataset

description: Output power time series from an optically injected 1064 nm solid-state Nd:YVO4 microchip laser. Time series recorded for different combinations of injection strength and optical frequency detuning.Full details here http://research.science.mq.edu.au/photonics-dynamical-systems/our-research/optically-injected-solid-state-lasers/Two 1064 nm solid state Nd:YVO4 lasers were operated in a master-slave configuration. The laser crystals were pumped with 150 mW diode lasers (SDL) operating at 809 nm. The pump power was low enough to ensure single mode operation. Light from the master laser was injected into the slave via an acousto-optic modulator (AOM) and the relative injection power measured on a detector. The temperature of the master laser was tuned with the Peltier element to control the frequency detuning between the lasers. The optical input of a Tektronix CSA 7404 oscilloscope was used to measure the intensity time-series of the slave laser under different combinations of injection strength and frequency detuning. This dataset consists of 55,440 files containing a single time series corresponding to a particular combination of injection strength and frequency detuning. The value of injection and detuning are specified in the file attributes 'var1' and 'var2'. The filename also contains the detuning value and injection index.J. P. Toomey, D. M. Kane, S. Valling and A. M. Lindberg 'Automated correlation dimension analysis of optically injected solid state lasers,' Optics Express 17 (9), 7592-7608 (2009).<br><br>