cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/xhl-4je-6wx
title: †Inconobotopora Tang & Cuffey, 1998

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.c.3904504_d18.v1
title: Additional file 9: of Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics

description: Atypical snoRNA motif sequences. sto file for atypical snoRNA motif sequences and their alignment. (STO 15 kb)
DOI: 10.17632/ttntwwxkfd
title: Viewpoints analysis for sweet peppers maturity classification

description: ‘Photocell’ dataset 97 red sweet peppers (cultivar: Banji; seed company: Efal) and 102 yellow sweet peppers (cultivar: Liri; Seed company: Hazera) from maturity classes 1–4 were harvested from a commercial greenhouse in Kmehin, Israel in January 2019. Each pepper was manually placed inside a photocell, to ensure uniform illumination; each of the four photocell sides included three light-emitting diodes (LED) spots of 35 watts each [46], resulting in total illumination of 49 lux. Images were acquired using an IDS Ui-5250RE RGB color camera with a resolution of 1600 x 1200 pixels, placed 38 cm above the black cell floor. Images of each pepper were acquired from four viewpoints: three from the sides of the peppers, taken in no particular order, and the bottom viewpoint of the pepper. ‘Robotic’ dataset 69 red and 70 yellow peppers from maturity classes 2, 3, and 4 were harvested from the same commercial greenhouse in Kmehin, Israel, in November 2019. No peppers were collected from class 1 since we assumed that immature peppers that are entirely green would not be detected by a harvesting robot. Each pepper was individually attached to a pepper plant at a random orientation in a lab environment without controlled illumination. The peppers were attached to the plant hanging down straight in a way that does not create occlusion by leaves or stems and prevents overlap between peppers. Images for each pepper were acquired from three side viewpoints from the same height. No pictures of the bottom viewpoint were taken since it is not always feasible for harvesting robots due to plant parts that prevent the robot from reaching the pepper from the bottom. The images were acquired using an Intel RealSense D435 RGB-D (color + depth) camera mounted on a Sawyer robotic 7-degree-of-freedom torque-controlled arm from Rethink Robotics. Automatic exposure and white-balance were enabled. The use of the robotic arm enables images from the three viewpoints to be made from the same pose for all peppers. The dataset, which is published as part of this paper, resulted in 417 RGB-D images of the different sides of the peppers and the whole pepper ground truth information of their maturity class. ‘Orientation’ dataset As part of the ‘robotic’ dataset collection, 14 red peppers and 14 yellow peppers from maturity classes 2 and 3 (seven from each of class) were taken from the peppers harvested for the robotic dataset. Each pepper was placed hanging straight down in a random orientation on a pepper plant in the lab. Images from three viewpoints were acquired for each pepper three times, and each time the pepper was twisted 120˚ clockwise around the z-axis, resulting in a different surface of the pepper facing the camera from the initial viewpoint. This collection produced a dataset of 252 RGB images.
DOI: 10.3535/7jy-jn6-1e8
title: †Eridotrypa aedilis (Eichwald, 1855)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ye5-vgt-8k9
title: †Hallopora tolli Bassler, 1911

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28098758.v1
title: Wild Chinese chestnut genome (V2)

description: We assembled a chromosome-scale genome of wild Chinese chestnut, and a total of 2,652,199 read pairs (90.55 Gb) were acquired by Hi-C sequencing, offering over 115-fold coverage. Then, to improve gene prediction accuracy, high-quality transcripts of 11 mixed tissue types were sequenced using a single-molecule real-time sequencer from Pacific Biosciences. Finally, a total of 33,991 protein-coding genes were aligned to the wild Chinese chestnut genome (V2).
DOI: 10.3535/e2b-lxx-nkj
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qvs-13v-nf1
title: †Homotrypa Ulrich, 1882

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26198033.v3
title: <b>A cost-effective and scalable approach for DNA extraction from FFPE tissues</b>

description: Additional data for <b>A cost-effective and scalable approach for DNA extraction from FFPE tissues</b> by Geisenberger et al. This repository contains DNA methylation data (array IDAT files, annotation), processed files from exome sequencing data (subsampled BAMs, VCF files and additional data) and supplemental tables for the manuscript.
DOI: 10.6084/m9.figshare.27029077.v1
title: Raw isotope and environmental data

description: The available data on Figshare covers comprehensive isotopic, dendrochronological, and climatic aspects of the study. This is complemented by isotope data (δ13C, δ18O in cellulose and δ13C, δ15N in bulk wood) to assess tree physiological responses to past environmental changes. Climatic data offers temperature reconstructions and precipitation indices, while atmospheric chemistry data provides historical nitrogen deposition estimates, precipitation pH and air CO2 concentration trends.
DOI: 10.6084/m9.figshare.28612058.v1
title: Mesh data + tally data

description: Output data - mesh tallies and standard tallies
DOI: 10.3535/4v3-cr1-ava
title: †Lioclemella spinea (Bassler, 1911)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dts-5vq-zc3
title: †Dianulites petropolitanus Dybowski, 1877 ()

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.10003193.v1
title: Differentially expressed genes in AVSc vs AS by RNA sequencing

description: Human aortic valve tissue was obtained from patients undergoing cardiac surgical procedures. Differentially expressed genes in aortic valve sclerosis vs stenosis, obtained from human sclerotic and stenotic aortic valves.
DOI: 10.3535/1w7-5wa-zw4
title: †Hemiphragma rotundatum Bassler, 1911

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rcn-ny1-w91
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13361201.v1
title: Evaluation of the Mental Health Status of University Students in Bangladesh During the Covid-19 Outbreak.csv

description: This data set is about mental status of university students in Bangladesh during Covid-19
DOI: 10.6084/m9.figshare.2078341.v1
title: Retinopathy paper database for de-id data.xlsx

description: The purpose of this cross-sectional study was to perform comprehensive ophthalmological and neurological examinations on 111 patients with a history of West Nile virus infection and describe the ocular manifestations. <b></b>
DOI: 10.3535/8qp-f69-e4w
title: Microconchida

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dj8-ytd-24a
title: †Diplotrypa Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27061441.v1
title: PM-Log-Rules.rar

description: process model ，event log，DataConstraints
DOI: 10.17632/sfyhrptnhc
title: Fuelwood collection and technical efficiency of rural households in Uganda

description: The Data set was created using Uganda National Household Survey 2019/20, which was collected by the Uganda Bureau of Statistics. My research is based on the assumption that time spent collecting fuelwood deters rural household technical efficiency. Variables were created by merging different data sections using stata 17 software. Variable labels are attached where necessary to ease interpretation on the data. Total time on fuel wood collection is computed by summing up time used to walk to fields and time taken to gather it.
DOI: 10.3535/h54-5z3-p2j
title: graptolite argillite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25911745.v1
title: <b>PGMD: a database focusing on pig gut microbiology and nutrition</b>

description: The current version of the <b>PGMDB</b> includes five csv files: research project data, sample data, microbial amplicon sequencing data, Lefse difference analysis data, and feed nutrition data.
DOI: 10.6084/m9.figshare.28557182.v1
title: ParalellCorpusMixtec-Spanish

description: The publication of this data aims to contribute to the rescue and preservation of the indigenous Mixtec language through the collection of corpora and the development of technologies in the Mixtec language.This data contains 14,587 pairs of Spanish-Mixtec sentences. The data are from 4 categories: Laws, Education, Religion, and Health. In collecting this data, a search was carried out in person and digitally to collect parallel corpora. After the search, the physical texts were scanned. We then conducted a valuable manual data correction and preprocessing process to clean and prepare the data.The majority of the texts collected are from religious and educational categories. This data is valuable in the development of language technologies in the Mixtec language. Our data can be used to develop voice translation models, morpho-syntactic analysis, and spell checkers in the Mixtec language. Our data has valuable contributions since it does not contain duplicate fragments or incomplete or empty sentences. Researchers using our data do not need to scan physical documents, and we correct errors identified in the data.
DOI: 10.6084/m9.figshare.6154415.v1
title: A new lepidosauromorph reptile from the Middle Triassic (Ladinian) of Germany and its phylogenetic relationships

description: Although lepidosaurs are by far the most diverse and widespread group of present-day nonavian reptiles, with over 10,000 formally named species, their early diversification is documented only by a handful of incomplete fossils with few diagnostic features. Recent excavations in strata of the Lower Keuper (Middle Triassic: Ladinian) of Baden-Württemberg, Germany, have yielded abundant skeletal remains of a diversity of small- to medium-sized diapsid reptiles, which include at least three taxa of lepidosauromorphs. One, here named <i>Fraxinisaura rozynekae</i>, is a small-bodied reptile characterized by (1) maxillary and dentary tooth crowns conical, with lingual striae near their apices; (2) maxilla with a dorsoventrally low facial process and long tooth-bearing portion anterior to this process; (3) jugal with a short anterior process and a very short, pointed posterior process; and (4) ilium with a tall, posterodorsally extending blade. Tooth implantation is pleurodont. Size variation in the sample sheds some light on ontogenetic changes, mainly affecting the shape of and ornamentation on cranial bones. Phylogenetic analysis recovered <i>Fraxinisaura rozynekae</i> among Lepidosauromorpha and as the sister taxon of the Middle to Late Jurassic <i>Marmoretta oxoniensis</i>. Unfortunately, currently existing character-taxon matrices do not allow confident resolution of the interrelationships of these and other early Mesozoic lepidosauromorph reptiles. http://zoobank.org/urn:lsid:zoobank.org:pub:02C69A1C-FCC8-4D0C-BA71-79BA30BC9DA7 SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Schoch, R. R., and H.-D. Sues. 2018. A new lepidosauromorph reptile from the Middle Triassic (Ladinian) of Germany and its phylogenetic relationships. Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2018.1444619.
DOI: 10.17632/2bkc7gp2sd
title: MixUQ

description: Mix UQ: Quantification of mixing and dynamic uncertainty for transport in heterogeneous porous media.
This repository contains the collection of data tied to the developments of the EU-funded Mix UQ project (895152)
PI: Aronne Dell'Oca; Supervisor: Marco Dentz.
DOI: 10.17632/td9zh6jkx2
title: STELLA-2 Randomized Trial

description: Randomized trial on minimally-invasive (transperitoneal or extraperitoneal) paraaortic lymphadenectomy. The study objective was to evaluate if extraperitoneal paraaortic lymphadenectomy using a robotic-assisted approach was associated with fewer complications when compared to all other approaches (conventional laparoscopic transperitoneal or extraperitoneal and robotic-assisted transperitoneal) without compromising lymph node yield, operative time or length of stay. Design: Exploratory analysis of the prospective randomized open-label multicenter trial (STELLA-2) Setting: Three academic reference hospitals. Patients: Two-hundred and three eligible patients from STELLA-2 trial were included. Interventions: Patients were randomized to extraperitoneal or transperitoneal PALND using a minimally invasive approach (either laparoscopy or robotic-assisted) for surgical staging of endometrial or ovarian cancer. Measurements and Main Results: Primary endpoint was evaluated through a composite variable which included at least one of the following events: bleeding during PALND ≥ 500 mL, any intraoperative complication related to PALND, severe postoperative complication (Dindo ≥ IIIA), impossibility to complete the procedure or conversion to laparotomy). Of the 203 patients analyzed, 68 patients were assigned to the extraperitoneal laparoscopic group (X-L), 62 to the transperitoneal laparoscopic group (T-L), 35 to the extraperitoneal robotic group (X-R), and 38 to the transperitoneal robotic group (T-R). A reduced trend in complications was observed in the extraperitoneal robotic-assisted arm when considering the primary endpoint (X-L: 25.0%, T-L:24.2%, X-R: 5.7%; T-R: 28.9%, p=0.073). In a multivariable analysis, age (OR: 1.05, 95% CI: 1.00-1.09), body mass index (OR: 1.09, 95% CI: 1.03-1.16), and waist-hip ratio (OR: 1.66, 95% CI: 1.12-2.47) were found to independently increase the risk of PALND complications, while extraperitoneal robotic approach (OR: 0.13, 95% CI 0.02-0.64) was an independent protective factor for complication occurrence.
DOI: 10.3535/plz-81k-ee3
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/w4d-n38-d6y
title: graptolite argillite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12674189.v2
title: Bracon brevicornis linked-read genome assembly PRJEB35412

description: Presented here is the <i>Bracon brevicornis</i> genome assembly (fasta file). Also available via the ENA (BioProject PRJEB35412), presented here as an additional file resource. Briefly, this is a 10X Genomics linked-read assembly, where <i>B. brevicornis</i> females of a fairly inbred lab strain were used in the DNA extraction. This DNA isolation was used in concert with DNA from a known specimen of an unrelated (plant) species where the other DNA was carrier DNA to ensure that the 10X Genomics reaction succeeded. More is explained in the forthcoming preprint (NB: to be added after it is preprinted).<br>
DOI: 10.6084/m9.figshare.21936801.v2
title: R Script and data for concave niche modelling to assess the potential of 138 African forgotten food crops for staple crop diversification under climate change

description: R Script for concave-niche modeling and corresponding datasets. This R Script is being used for the analysis of a paper titled "Forgotten food crops for healthy diets in a warmer sub-Saharan Africa".
DOI: 10.6084/m9.figshare.26489389.v1
title: Mapping Revised Field of Science and Technology (FOS) Classification to Scopus' All Science Journal Classification Codes (ASJC)

description: The OECD Category schema corresponds to the Revised Field of Science and Technology (FOS) Classification of the Frascati Manual. It consists of 40 subcategories of 6 major fields, namely Natural Sciences, Engineering and Technology, Medical and Health Sciences, Agricultural Sciences, Social Sciences and Humanities.The All Science Journal Classification (ASJC) system in Scopus categorizes journals and articles into subject areas to facilitate research and discovery. The ASJC includes a broad range of disciplines, divided into four main areas: Life Sciences, Physical Sciences, Health Sciences, Social Sciences and Humanities. These subject areas are further divided into more specific sub-categories to provide detailed classification for scholarly content.Mapping process was conducted in January 2023, utilizing the then-current versions of the classifications.<br>
DOI: 10.17632/ts6wtn5y8h
title: LINF_100008700

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/whxw97nw86
title: Bays-damselfish

description: We conducted an observational study on the benthic community of the fringing reefs in the two major bays in Moorea, French Polynesia (Cook’s Bay and Opunohu Bay) and investigated the relationship between the presence of damselfish (Stegastes nigricans) territories and corals within the territories. We found that corals had significantly greater species richness inside of S. nigricans territories than outside. Our results support a positive effect of S. nigricans on coral diversity, potentially through indirect positive effects on many non-dominant coral species.
DOI: 10.3535/l9d-t5g-2c8
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/r2a-524-smd
title: Trypanites isp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/6s82bzm5gy
title: Cancer-Related Mutations Identified in Primed Human Pluripotent Stem Cells
DOI: 10.3535/7x8-trh-elg
title: †Sowerbyella Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/g4m-98m-7gb
title: †Peronopora Nicholson, 1881

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19963901.v1
title: Klebsiella pneumoniae ESBL forming spheroplasts in the fresh and unstained urine sediment

description: Abstract A 60 year-old man was submitted to kidney transplantation in 2013 due to chronic renal insufficiency caused by hypertension. He had recurrent episodes of urinary tract infection and came to the hospital due to a 4 day-long fever, abdominal pain, burning urination and nausea. Routine urinalysis revealed a picture of infection (&gt; 50 leucocytes/high power field associated to massive bacteriuria). The urine sediment revealed elongated like elements with an enlarged part in the middle of the structure body.
DOI: 10.3535/jrx-rt6-n5g
title: †Mesotrypa volchovensis Modzalevskaya, 1953

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ntj-xnj-3qr
title: †Diplotrypa Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25624785.v1
title: The chromosome-level genome assembly of Euglena gracilis

description: The trf-repeat annotaion of the genome.
DOI: 10.3535/6cp-jej-avd
title: †Homotrypa Ulrich, 1882

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jj3-g3y-gnz
title: Chondrites isp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.35092/yhjc.12459413.v1
title: Dataset from Mouse 8 for Sit & Goard: Distributed and Retinotopically Asymmetric Processing of Coherent Motion in Mouse Visual Cortex

description: Accompanying dataset for Sit KK, Goard MJ. Distributed and Retinotopically Asymmetric Processing of Coherent Motion in Mouse Visual Cortex.<br><br>This dataset contains the data for mouse 8 / 10<br>Mouse SKKS049<br>See all data in collection here: https://doi.org/10.35092/yhjc.c.5018363<br>These datasets contain calcium imaging data taken from L2/3 of the primary visual cortex in mice. Mice were head fixed and passively watching a random dot kinematogram stimulus. The stimulus data vector for processing these data are also included. The accompanying code to analyze these data can be found at: https://github.com/kevinksit/CoherentMotionProject<br>Data are either in preprocessed DFF matrices, which represent the change in neural activity compared to a baseline or raw images from the microscope. All data are processed with MATLAB 2018b.<br>The purpose of these data is to understand the organization of neural activity in response to coherent motion in the murine visual cortex.<br>The manuscript associated with these data is Sit KK, Goard MJ. Distributed and Retinotopically Asymmetric Processing of Coherent Motion in Mouse Visual Cortex.<br>ABSTRACTPerception of visual motion is important for a range of ethological behaviors in mammals. In primates, specific visual cortical regions are specialized for processing of coherent visual motion. However, whether mouse visual cortex has a similar organization remains unclear, despite powerful genetic tools available for measuring population neural activity. Here, we use widefield and 2-photon calcium imaging of transgenic mice to measure mesoscale and cellular responses to coherent motion. Imaging of primary visual cortex (V1) and higher visual areas (HVAs) during presentation of natural movies and random dot kinematograms (RDKs) reveals varied responsiveness to coherent motion, with stronger responses in dorsal stream areas compared to ventral stream areas. Moreover, there is considerable anisotropy within visual areas, such that neurons representing the lower visual field are more responsive to coherent motion. These results indicate that processing of visual motion in mouse cortex is distributed heterogeneously both across and within visual areas.
DOI: 10.3535/3vf-d3r-ck2
title: †Ceramoporella Ulrich, 1882

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hr6-2z1-btz
title: Bioturbation trace fossils

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24233755.v1
title: Mouse hippocampus calcium imaging data

description: Datasets for the paper "<b>Real-time Multimodal Sensory Detection Using Widefield Hippocampal Calcium Imaging</b>"
DOI: 10.3535/dhe-afz-qml
title: †Hemiphragma subirrasum Männil & Pushkin, 1987

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mnz-blp-sh4
title: †Inconobotopora Tang & Cuffey, 1998

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.16722724.v1
title: Serum and Rumen Fluid Metabolome

description: Rumen fluid and serum metabolomes