cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1227097.08fu
title: SH1227097.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1227098.08fu
title: SH1227098.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/th026771
title: TH026771
title: Pelliales

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th026772
title: TH026772
title: Gloeochaetales

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/sh1227099.08fu
title: SH1227099.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1227100.08fu
title: SH1227100.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/th026773
title: TH026773
title: Colponemidia ord Incertae sedis

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th026774
title: TH026774
title: Echinostomida

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.25549/one-c4-49166
title: Charles Finley, letters (1967)

description: Charles Finley, letter asking about advertising, and response from Robert Gregory (1967)
DOI: 10.15156/bio/sh1227101.08fu
title: SH1227101.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.2qqzqq
title: Occurrence Download

description: A dataset containing 13409 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Country is one of (United States of America, Mexico, Canada)",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Troglodytes troglodytes (Linnaeus, 1758)"
 ]
}

 The dataset includes 13409 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049687-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kjh2gk
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "Geometry POLYGON((-84.83979 44.68554,-84.8755 44.66093,-84.83814 44.61559,-84.76453 44.62419,-84.74586 44.66875,-84.80518 44.69374,-84.83979 44.68554))",
 "TaxonKey is Actinopterygii",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 34 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002356-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.28k33t
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Espeletia lucida Aristeg."
 ]
}

 The dataset includes 23 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006197-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mjun5l
title: Occurrence Download

description: A dataset containing 118 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Benin",
 "Country is Burkina Faso",
 "Country is Togo",
 "Country is Guinea",
 "Country is Côte d’Ivoire",
 "Country is Ghana",
 "Country is Guinea-Bissau",
 "Country is Mali",
 "Country is Nigeria",
 "Country is Senegal"
 ]
 },
 "TaxonKey is Sacciolepis cymbiandra Stapf"
 ]
}

 The dataset includes 118 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002356-190307172214381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d7kjmd
title: Occurrence Download

description: A dataset containing 391 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Campephilus imperialis (Gould, 1832)"
 ]
}

 The dataset includes 391 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0403120-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qbyw6y
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Claytonia multiscapa subsp. czukczorum (Volkova) John M.Mill. & K.L.Chambers"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049742-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tnhfrv
title: Occurrence Download

description: A dataset containing 2074618 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Geometry POLYGON((-98.31665 17.41355,-93.8562 17.41355,-93.8562 20.75611,-98.31665 20.75611,-98.31665 17.41355))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2074618 records from 824 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002356-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tuxptr
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aristolochia burchellii Mast."
 ]
}

 The dataset includes 16 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049763-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bspfwd
title: Occurrence Download

description: A dataset listing the 459 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Salix L."
 ]
}

 The dataset's 459 records were derived from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001003-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.adsfcp
title: Occurrence Download

description: A dataset containing 359 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "Geometry POLYGON ((9.474637 47.057457, 9.510277 47.092499, 9.512499 47.100273, 9.512777 47.109444, 9.511389 47.121666, 9.505554 47.139999, 9.49861 47.15361, 9.489721 47.165550, 9.484444 47.179718, 9.484165 47.192215, 9.485832 47.200272, 9.491388 47.215271, 9.502222 47.231384, 9.533569 47.274544, 9.566387 47.243889, 9.622776 47.150551, 9.633888 47.130554, 9.63611 47.10361, 9.634998 47.094994, 9.627222 47.086388, 9.610277 47.070274, 9.603611 47.065826, 9.598635 47.063835, 9.544722 47.070000, 9.538055 47.070000, 9.506388 47.064720, 9.485277 47.061104, 9.474637 47.057457))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 359 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038305-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6rbnae
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aristolochia bicolor Ule"
 ]
}

 The dataset includes 13 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049698-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.55rxfz
title: Occurrence Download

description: A dataset containing 498588 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Actitis hypoleucos (Linnaeus, 1758))",
 "HasCoordinate is true",
 "DecimalLatitude is greater than or equal to 29.93667",
 "DecimalLatitude is less than or equal to 51.91193",
 "DecimalLongitude is greater than or equal to -14.67522",
 "DecimalLongitude is less than or equal to 39.79752",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation)",
 "Year is greater than or equal to 1970",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 498588 records from 966 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039052-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7q8pqf
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Petasites pyrenaicus",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 23 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018824-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xt7pa7
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Petasites pyrenaicus",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018825-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jdz397
title: Occurrence Download

description: A dataset containing 224 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mentzelia desertorum"
 ]
}

 The dataset includes 224 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018828-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.exgrzh
title: Occurrence Download

description: A dataset containing 34505 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cytisus scoparius scoparius"
 ]
}

 The dataset includes 34505 records from 250 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018823-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17035938
title: Gundelsheim, St Elisabeth Apotheke

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope):

https://kalliope-verbund.info/ead?ead.id=DE-611-BF-70963

Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.5281/zenodo.17035939
title: Gundelsheim, St Elisabeth Apotheke

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope):

https://kalliope-verbund.info/ead?ead.id=DE-611-BF-70963

Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.15468/dl.7ygnbw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rasbora haru)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018831-250827131500795/datasets/export for details.
DOI: 10.15468/dl.8k7a2k
title: Occurrence Download

description: A dataset containing 184 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Glossanodon leioglossus"
 ]
}

 The dataset includes 184 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018832-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17035838
title: Ancient DNA of the Toronto Subway Deer Adds to the Extinction List of Ice Age Megafauna

description: All data required for phylogenetic analyses for the publication "Ancient DNA of the Toronto Subway Deer Adds to the Extinction List of Ice Age Megafauna", includes alignments and xml files.



XML files beginning by 03_SNAPP were generated in Beauti for the BEAST software, their naming convention includes the reference species (odo = WTD, rangi = caribou, bos = cattle) and the data filtering as described in the paper.

01-plinkDist-all-noMissingD-SNAPPmod.nwk file is the starting tree supplied to the SNAPP analyses

the two fasta files are mitochondrial DNA alignment including several cervidae and odocoileini species, respectively. The alignments were created in MEGA using clustalW and removing all missing data, ambiguous bases and singletons.
DOI: 10.5281/zenodo.17035837
title: Ancient DNA of the Toronto Subway Deer Adds to the Extinction List of Ice Age Megafauna

description: All data required for phylogenetic analyses for the publication "Ancient DNA of the Toronto Subway Deer Adds to the Extinction List of Ice Age Megafauna", includes alignments and xml files.



XML files beginning by 03_SNAPP were generated in Beauti for the BEAST software, their naming convention includes the reference species (odo = WTD, rangi = caribou, bos = cattle) and the data filtering as described in the paper.

01-plinkDist-all-noMissingD-SNAPPmod.nwk file is the starting tree supplied to the SNAPP analyses

the two fasta files are mitochondrial DNA alignment including several cervidae and odocoileini species, respectively. The alignments were created in MEGA using clustalW and removing all missing data, ambiguous bases and singletons.
DOI: 10.15468/dl.mk4vct
title: Occurrence Download

description: A dataset containing 46237 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Fossil",
 "Country is China",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 46237 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018833-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.