cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14936052
title: Maps of cropping patterns in China during 2015-2021

description: Here we present the first annual 500-m maps of multiple cropping systems in china at national scale during 2015 to 2020,which provide information on cropping intensity with descriptions of three staple crops (Maize,paddy rice and wheat). We produced the cropping patterns maps by developing phenological metrics, which can be applied to national scale.
Qiu, B. et al. Maps of cropping patterns in China during 2015-2021. Scientific data (accepted). DOI: 10.1038/s41597-022-01589-8<br>
DOI: 10.6084/m9.figshare.7580603.v1
title: Additional file 1: of Integration of proteomic and genomic approaches to dissect seed germination vigor in Brassica napus seeds differing in oil content

description: Table S1. The result of ANOVA analysis for germination index and germination rate. Table S2. The peptide matches of DEPs. Table S3. The DEPs identified during germination in seeds with high and low oil content in B. napus. Table S4. Corresponding Arabidopsis homologous genes and STRING abbreviations of DEPs. Bolded font represents the genes that annotated as seed germination in NCBI database. Italic font represents the genes that annotated as seed specific in NCBI database. Table S5. Expression patterns of DEPs in germinating seeds with high and low oil content. H and L indicates that protein expression patterns of high and low oil-containing seeds, and the number indicates the hours after imbibition. Table S6. All of the QTLs for GP and GI detected in the present research. Table S7. The candidate genes identified by proteomic analysis. Table S8. The DEPs located within the QTLs for GP and GI. Black bold represent the gene that also founded in Table S7. Table S9. B. napus cultivars used in this research. Table S10. The setting of fluorescent dye labeling for protein samples. Table S11. The primers used in the present research. (XLSX 272 kb)
DOI: 10.5281/zenodo.10635934
title: Four Terminal Suspended Thermal Bridge

description: https://doi.org/10.1016/j.ijheatmasstransfer.2024.125302
DOI: 10.5281/zenodo.10635933
title: Four Terminal Suspended Thermal Bridge

description: https://doi.org/10.1016/j.ijheatmasstransfer.2024.125302
DOI: 10.6084/m9.figshare.13347049.v1
title: Additional file 4 of Identification of a four-gene panel predicting overall survival for lung adenocarcinoma

description: Additional file 4. List of differentially expressed genes associated with OS for LUAD.
DOI: 10.6084/m9.figshare.5483284
title: Genome-wide analysis of antioxidant enzyme gene families involved in drought and low-temperature responses in Apple (<i>Malus domestica</i>)

description: Antioxidant enzymes were well-known for reactive oxygen scavenging and protecting cells from oxidative damage in multiple biotic and abiotic stresses. Aimed to overview of antioxidant enzyme gene families and screen for drought and low-temperature response members, the whole apple antioxidant enzyme genes in apple genome were studied. Out of 73candidates in seven antioxidant enzyme gene families among the entire apple genome, a total of 49 genes were identified, showed more antioxidant enzyme gene members than those in other plant species. A phylogenetic tree based on predicted functional domains and motifs of apple and Arabidopsis antioxidant enzymes revealed 19 putative drought or low-temperature response genes, and 9 out 19 genes belong to five families responded to both drought and low-temperature stresses. Subsequently, cis-elements in those nine antioxidant enzyme gene promoters were examined and abundant elements involved in multiple hormone regulation and abiotic stresses response, including drought and low-temperature were found. The tissue expression specificity for those nine members in eight kinds of tissues was also examined. Screening and identifying both drought and low-temperature response genes provide useful information to understand gene functions and promote application of antioxidant enzyme genes in apple abiotic resistance breeding.
DOI: 10.6084/m9.figshare.25040537
title: Mouse embryogenesis atlas - pariwise anndatas

description: anndatas, each of a time point pair, with adata.obsm['X_pcaS'] the Seurat integration performed as in TOME (https://www.nature.com/articles/s41588-022-01018-x)
DOI: 10.6084/m9.figshare.9677123
title: Experimental data from Peg–hole disassembly using active compliance

description: When considered in two-dimensional space, a cylindrical peg being withdrawn from a clearance-fit hole can exhibit one of four contact states: no contact, one-point contact, two-point contact and line contact. Jamming and wedging can occur during the two-point contact. Effective control of the two-point contact region can significantly reduce resistance in peg–hole disassembly. In this paper, we explore generic peg–hole disassembly processes with compliance and identify the effects of key parameters including the degree of compliance, the location of the compliance centre and initial position errors. A quasi-static analysis of peg–hole disassembly has been performed to obtain the boundary conditions of the two-point contact region. The effects of key variables on the two-point contact region have been simulated. Finally, peg–hole disassemblies with different locations of compliance centre achieved using active compliance have been experimentally investigated. The proposed theoretical model can be implemented to predict the range and position of the two-point contact region from the perspective of peg–hole disassembly.
DOI: 10.6084/m9.figshare.7580639
title: Additional file 10: of Identification and analysis of long non-coding RNAs in response to H5N1 influenza viruses in duck (Anas platyrhynchos)

description: Table S8. KEGG analysis of DEGs co-expressed with DElncRNAs. (XLSX 83 kb)
DOI: 10.6084/m9.figshare.7580699.v1
title: Additional file 7: of Identification and analysis of long non-coding RNAs in response to H5N1 influenza viruses in duck (Anas platyrhynchos)

description: Table S5. FPKM value of DElncRNAs and DEGs.(CSV 1273 kb)
DOI: 10.6084/m9.figshare.7580174
title: Computer vision technology-based face mirroring system providing mirror therapy for Bell’s palsy patients

description: <b>Purpose:</b> Mirror therapy (MT) is an effective adjunct treatment for Bell’s palsy (BP); however, a bifold mirror-based apparatus hindered the effectiveness. Besides, few studies have reported the related factors of facial embodiment. The aim of this study was to evaluate the feasibility of a novel face mirroring System (FMS) and the effects on facial embodiment in BP patients, comparing with conventional mirror book (MB) therapy. <b>Method:</b> This was a within-subject design trial. Thirty-six BP patients were recruited and received investigations on user experience and perception of facial embodiment after each facial task (reset, facial expression, and enunciation) when using both FMS and MB separately and randomly. <b>Results:</b> Data of questionnaires showed FMS had a better user experience and perception of facial embodiment comparing with MB. Patients agreed more strongly on the statements of facial embodiment for facial expression and enunciation tasks when using both apparatuses, comparing with rest. <b>Conclusions:</b> The FMS is a feasible and optimal setup to provide MT for BP patients. Moreover, speech paired motor training is a superior strategy for facilitating facial embodiment.Implications for RehabilitationThe Face Mirroring System is a feasible and optimal apparatus for mirror therapy in Bell’s palsy patients.Perception of facial embodiment can be increased via combining multiple sensory feedbacks.Speech paired motor tasks have considerable potential to facilitate facial embodiment. The Face Mirroring System is a feasible and optimal apparatus for mirror therapy in Bell’s palsy patients. Perception of facial embodiment can be increased via combining multiple sensory feedbacks. Speech paired motor tasks have considerable potential to facilitate facial embodiment.
DOI: 10.6084/m9.figshare.7580603
title: Additional file 1: of Integration of proteomic and genomic approaches to dissect seed germination vigor in Brassica napus seeds differing in oil content

description: Table S1. The result of ANOVA analysis for germination index and germination rate. Table S2. The peptide matches of DEPs. Table S3. The DEPs identified during germination in seeds with high and low oil content in B. napus. Table S4. Corresponding Arabidopsis homologous genes and STRING abbreviations of DEPs. Bolded font represents the genes that annotated as seed germination in NCBI database. Italic font represents the genes that annotated as seed specific in NCBI database. Table S5. Expression patterns of DEPs in germinating seeds with high and low oil content. H and L indicates that protein expression patterns of high and low oil-containing seeds, and the number indicates the hours after imbibition. Table S6. All of the QTLs for GP and GI detected in the present research. Table S7. The candidate genes identified by proteomic analysis. Table S8. The DEPs located within the QTLs for GP and GI. Black bold represent the gene that also founded in Table S7. Table S9. B. napus cultivars used in this research. Table S10. The setting of fluorescent dye labeling for protein samples. Table S11. The primers used in the present research. (XLSX 272 kb)
DOI: 10.6084/m9.figshare.7580654.v1
title: MOESM1 of Single cell sequencing reveals gene expression signatures associated with bone marrow stromal cell subpopulations and time in culture

description: Additional file 1: Table S1. Gene list.
DOI: 10.6084/m9.figshare.7580663
title: Additional file 3: of Identification and analysis of long non-coding RNAs in response to H5N1 influenza viruses in duck (Anas platyrhynchos)

description: Information of lncRNA annotated with GTF files. (GTF 1785 kb)
DOI: 10.6084/m9.figshare.7580663.v1
title: Additional file 3: of Identification and analysis of long non-coding RNAs in response to H5N1 influenza viruses in duck (Anas platyrhynchos)

description: Information of lncRNA annotated with GTF files. (GTF 1785 kb)
DOI: 10.6084/m9.figshare.7580678.v1
title: Additional file 5: of Identification and analysis of long non-coding RNAs in response to H5N1 influenza viruses in duck (Anas platyrhynchos)

description: Table S3. Protein-coding genes located within 10/100â kb upstream and downstream of duck lncRNAs. (XLSX 642 kb)
DOI: 10.6084/m9.figshare.7580669.v1
title: Additional file 4: of Identification and analysis of long non-coding RNAs in response to H5N1 influenza viruses in duck (Anas platyrhynchos)

description: Table S2. DElncRNAs detected between duck infected with DK/49 or GS/65 H5N1 virus and control individuals. (XLSX 176 kb)
DOI: 10.6084/m9.figshare.7580693.v1
title: Additional file 6: of Identification and analysis of long non-coding RNAs in response to H5N1 influenza viruses in duck (Anas platyrhynchos)

description: Table S4. List of DEGs used in co-expression analysis. (XLSX 2055 kb)
DOI: 10.6084/m9.figshare.7580711.v1
title: Additional file 9: of Identification and analysis of long non-coding RNAs in response to H5N1 influenza viruses in duck (Anas platyrhynchos)

description: Table S7. GO enrichment analysis of DEGs co-expressed with DElncRNAs. (XLSX 135 kb)
DOI: 10.6084/m9.figshare.7580705
title: Additional file 8: of Identification and analysis of long non-coding RNAs in response to H5N1 influenza viruses in duck (Anas platyrhynchos)

description: Table S6. Thirteen co-expression modules were predicted with the WGCNA package. (CSV 2346 kb)
DOI: 10.6084/m9.figshare.7580741
title: Additional file 1: of Human liver stem cells attenuate concanavalin A-induced acute liver injury by modulating myeloid-derived suppressor cells and CD4+ T cells in mice

description: Biochemical evaluation in the serum and the detection of tracing of transplanted cells. Supplementary data: supplementary materials and methods and supplementary figures. Supplementary Figure 1: Biochemical evaluation of (a) ALT, (b) AST, and (c) TBIL in the serum from groups of normal, M (ConA) and T (HYX1 + ConA) mice. Supplementary Figure 2: Tracing of transplanted cells. Supplementary Figure 3: Long-term protective effect of HYX1 on a 2nd ConA-induced liver injury. Supplementary Figure 4: Biochemical evaluation of ALT, AST and TBIL in the serum of mice with HYX1 transplantation alone. (ZIP 27721 kb)
DOI: 10.6084/m9.figshare.7580741.v1
title: Additional file 1: of Human liver stem cells attenuate concanavalin A-induced acute liver injury by modulating myeloid-derived suppressor cells and CD4+ T cells in mice

description: Biochemical evaluation in the serum and the detection of tracing of transplanted cells. Supplementary data: supplementary materials and methods and supplementary figures. Supplementary Figure 1: Biochemical evaluation of (a) ALT, (b) AST, and (c) TBIL in the serum from groups of normal, M (ConA) and T (HYX1 + ConA) mice. Supplementary Figure 2: Tracing of transplanted cells. Supplementary Figure 3: Long-term protective effect of HYX1 on a 2nd ConA-induced liver injury. Supplementary Figure 4: Biochemical evaluation of ALT, AST and TBIL in the serum of mice with HYX1 transplantation alone. (ZIP 27721 kb)
DOI: 10.6084/m9.figshare.7056533
title: Predicted genes for Neurospora intermedia spore killers

description: Predicted genes in the genomes of three Neurospora intermedia strains.<br>See Svedberg et al., (2018) "Convergent evolution of complex genomic 
rearrangements in two fungal meiotic drive elements" for further 
information: https://www.nature.com/articles/s41467-018-06562-x (DOI:10.1038/s41467-018-06562-x)<br><br>7426, <i>Sk-2</i>3194, <i>Sk-3</i>8761, sensitive<br>Each strain is annotated separately using transcripts assembled using Cufflinks, based on RNA-seq data. The predicted genes are deposited as a GFF file, a fasta file with predicted transcipts and a fasta file with predicted proteins. The GFF file was created using the de novo assemblies also found in the following Figshare dataset: <br><br>Svedberg, et al., "PacBio based genome assemblies of Neurospora intermedia spore killer strains".<br>https://doi.org/10.6084/m9.figshare.6974033
DOI: 10.6084/m9.figshare.7580654
title: MOESM1 of Single cell sequencing reveals gene expression signatures associated with bone marrow stromal cell subpopulations and time in culture

description: Additional file 1: Table S1. Gene list.
DOI: 10.6084/m9.figshare.12299096.v1
title: Additional file 1 of Feasibility investigation of uniportal video-assisted thoracoscopic anatomical lung resection for pulmonary sequestration

description: Additional file 1.
DOI: 10.6084/m9.figshare.7580729.v1
title: MOESM2 of MiR-30c/PGC-1Î˛ protects against diabetic cardiomyopathy via PPARÎą

description: Additional file 2. Table S1. Differentially expressed genes in 3, 28 and 42 day after diabetes induction.
DOI: 10.6084/m9.figshare.7580732.v1
title: MOESM3 of MiR-30c/PGC-1β protects against diabetic cardiomyopathy via PPARα

description: Additional file 3. Table S2. microRNA targeting PGC-1β predicted by TargetScan, PicTar and TarBase websites.
DOI: 10.6084/m9.figshare.7580669
title: Additional file 4: of Identification and analysis of long non-coding RNAs in response to H5N1 influenza viruses in duck (Anas platyrhynchos)

description: Table S2. DElncRNAs detected between duck infected with DK/49 or GS/65 H5N1 virus and control individuals. (XLSX 176 kb)
DOI: 10.6084/m9.figshare.7580699
title: Additional file 7: of Identification and analysis of long non-coding RNAs in response to H5N1 influenza viruses in duck (Anas platyrhynchos)

description: Table S5. FPKM value of DElncRNAs and DEGs.(CSV 1273 kb)
DOI: 10.6084/m9.figshare.7580711
title: Additional file 9: of Identification and analysis of long non-coding RNAs in response to H5N1 influenza viruses in duck (Anas platyrhynchos)

description: Table S7. GO enrichment analysis of DEGs co-expressed with DElncRNAs. (XLSX 135 kb)
DOI: 10.5281/zenodo.10657854
title: w0waCDM_gamma_3x2pt
DOI: 10.5281/zenodo.10657855
title: w0waCDM_gamma_3x2pt
DOI: 10.6084/m9.figshare.11266262
title: Baicalein restrains proliferation, migration, and invasion of human malignant melanoma cells by down-regulating colon cancer associated transcript-1

description: Baicalein (BAI) is an acknowledged flavonoids compound, which is regarded as a useful therapeutic pharmaceutical for numerous cancers. However, its involvement in melanoma is largely unknown. This study aimed to examine the anti-melanoma function of BAI and unraveled the regulatory mechanism involved. A375 and SK-MEL-28 were treated with BAI for 24 h. Then, CCK-8 assay, flow cytometry, and transwell assay were carried out to investigate cell growth, migration, and invasion. RT-qPCR was applied to detect the expression of colon cancer associated transcript-1 (CCAT1) in melanoma tissues and cells. The functions of CCAT1 in melanoma cells were also evaluated. Western blot was utilized to appraise Wnt/β-catenin or MEK/ERK pathways. BAI restrained cell proliferation and stimulated cell apoptotic capability of melanoma by suppressing cleaved-caspase-3 and cleaved-PARP. Cell migratory and invasive abilities were restrained by BAI via inhibiting MMP-2 and vimentin. CCAT1 was over-expressed in melanoma tissues and down-regulated by BAI in melanoma cells. Overexpressed CCAT1 reversed the BAI-induced anti-growth, anti-migratory, and anti-invasive effects. Furthermore, BAI inhibited Wnt/β-catenin and MEK/ERK pathways-axis via regulating CCAT1. Our study indicated that BAI blocked Wnt/β-catenin and MEK/ERK pathways via regulating CCAT1, thereby inhibiting melanoma cell proliferation, migration, and invasion.
DOI: 10.6084/m9.figshare.11266262.v1
title: Baicalein restrains proliferation, migration, and invasion of human malignant melanoma cells by down-regulating colon cancer associated transcript-1

description: Baicalein (BAI) is an acknowledged flavonoids compound, which is regarded as a useful therapeutic pharmaceutical for numerous cancers. However, its involvement in melanoma is largely unknown. This study aimed to examine the anti-melanoma function of BAI and unraveled the regulatory mechanism involved. A375 and SK-MEL-28 were treated with BAI for 24 h. Then, CCK-8 assay, flow cytometry, and transwell assay were carried out to investigate cell growth, migration, and invasion. RT-qPCR was applied to detect the expression of colon cancer associated transcript-1 (CCAT1) in melanoma tissues and cells. The functions of CCAT1 in melanoma cells were also evaluated. Western blot was utilized to appraise Wnt/β-catenin or MEK/ERK pathways. BAI restrained cell proliferation and stimulated cell apoptotic capability of melanoma by suppressing cleaved-caspase-3 and cleaved-PARP. Cell migratory and invasive abilities were restrained by BAI via inhibiting MMP-2 and vimentin. CCAT1 was over-expressed in melanoma tissues and down-regulated by BAI in melanoma cells. Overexpressed CCAT1 reversed the BAI-induced anti-growth, anti-migratory, and anti-invasive effects. Furthermore, BAI inhibited Wnt/β-catenin and MEK/ERK pathways-axis via regulating CCAT1. Our study indicated that BAI blocked Wnt/β-catenin and MEK/ERK pathways via regulating CCAT1, thereby inhibiting melanoma cell proliferation, migration, and invasion.
DOI: 10.6084/m9.figshare.11266271
title: Correlation of ultrasonography synovitis with disease activity and clinical response to etanercept treatment in juvenile idiopathic arthritis patients

description: This study aimed to investigate the correlation of ultrasonography (US) of synovitis with disease activity and clinical response to etanercept (ETN) in juvenile idiopathic arthritis (JIA) patients. Eighty-two JIA patients who underwent ETN treatment for 24 weeks were consecutively enrolled. US evaluations of 28 joints (shoulder, elbow, wrist, metacarpophalangeal, and proximal interphalangeal of hands and knee) at baseline were performed using grey-scale US and power doppler (PD) US, and US synovitis was defined as grey-scale abnormalities or PD abnormalities. Clinical response was assessed according to the ACRpedi 50 response criteria. In total, 2296 joints were scanned and 608 (26.5%) joints presented US synovitis, which was numerically higher than clinical synovitis (513 (22.3%)). The mean number of joints showing synovitis on US was 7.42±3.35, which was also numerically higher than that of clinical synovitis (6.26±2.70). The number of joints showing synovitis on US was positively correlated with C-reactive protein, erythrocyte sedimentation rate, number of joints with active disease, number of joints with limited range of motion, physician's global assessment of disease activity, parent/patient global assessment of overall well-being, and childhood health assessment questionnaire score. Most interestingly, the baseline number of joints showing synovitis on US was increased in ACRpedi 50 response JIA patients compared to non-response JIA patients, and it serves as an independent predictive factor for higher clinical response to ETN treatment. In conclusion, US is a more sensitive test to evaluate subclinical synovitis and disease activity in JIA patients, and US synovitis might serve as a marker for predicting increased clinical response rate to ETN treatment.
DOI: 10.6084/m9.figshare.11266271.v1
title: Correlation of ultrasonography synovitis with disease activity and clinical response to etanercept treatment in juvenile idiopathic arthritis patients

description: This study aimed to investigate the correlation of ultrasonography (US) of synovitis with disease activity and clinical response to etanercept (ETN) in juvenile idiopathic arthritis (JIA) patients. Eighty-two JIA patients who underwent ETN treatment for 24 weeks were consecutively enrolled. US evaluations of 28 joints (shoulder, elbow, wrist, metacarpophalangeal, and proximal interphalangeal of hands and knee) at baseline were performed using grey-scale US and power doppler (PD) US, and US synovitis was defined as grey-scale abnormalities or PD abnormalities. Clinical response was assessed according to the ACRpedi 50 response criteria. In total, 2296 joints were scanned and 608 (26.5%) joints presented US synovitis, which was numerically higher than clinical synovitis (513 (22.3%)). The mean number of joints showing synovitis on US was 7.42±3.35, which was also numerically higher than that of clinical synovitis (6.26±2.70). The number of joints showing synovitis on US was positively correlated with C-reactive protein, erythrocyte sedimentation rate, number of joints with active disease, number of joints with limited range of motion, physician's global assessment of disease activity, parent/patient global assessment of overall well-being, and childhood health assessment questionnaire score. Most interestingly, the baseline number of joints showing synovitis on US was increased in ACRpedi 50 response JIA patients compared to non-response JIA patients, and it serves as an independent predictive factor for higher clinical response to ETN treatment. In conclusion, US is a more sensitive test to evaluate subclinical synovitis and disease activity in JIA patients, and US synovitis might serve as a marker for predicting increased clinical response rate to ETN treatment.