cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25452/figshare.plus.24470548.v1
title: Eye movement-related eardrum oscillations (EMREOs) dataset and supporting code

description: <b>Abstract</b>Eye movements alter the relationship between the visual and auditory spatial scenes. Signals related to eye movements affect neural pathways from the ear through auditory cortex and beyond, but how these signals contribute to computing the locations of sounds with respect to the visual scene is poorly understood. Here, we evaluated the information contained in eye movement-related eardrum oscillations (EMREOs), pressure changes recorded in the ear canal that occur in conjunction with simultaneous eye movements. We show that EMREOs contain parametric information about horizontal and vertical eye displacement as well as initial/final eye position with respect to the head. The parametric information in the horizontal and vertical directions can be modelled as combining linearly, allowing accurate prediction of the EMREOs associated with oblique (diagonal) eye movements. Target location can also be inferred from the EMREO signals recorded during eye movements to those targets. We hypothesize that the (currently unknown) mechanism underlying EMREOs could impose a two-dimensional eye-movement related transfer function on any incoming sound, permitting subsequent processing stages to compute the positions of sounds in relation to the visual scene.<b>Significance Statement</b>When the eyes move, the alignment between the visual and auditory scenes changes. We are not perceptually aware of these shifts -- which indicates that the brain must incorporate accurate information about eye movements into auditory and visual processing. Here we show that the small sounds generated within the ear by the brain contain accurate information about contemporaneous eye movements in the spatial domain: the direction and amplitude of the eye movements could be inferred from these small sounds. The underlying mechanism(s) likely involve(s) the ear’s various motor structures, and could facilitate the translation of incoming auditory signals into a frame of reference anchored to the direction of the eyes and hence the visual scene.
DOI: 10.6084/m9.figshare.10048346.v1
title: Supplementary Material for: Placebo Effects of Nurses’ Communication alongside Standard Medical Care on Pain and Other Outcomes: A Randomized Controlled Trial in Clinical Tonsillectomy Care

description: Medicine
DOI: 10.6084/m9.figshare.11955498.v7
title: Dataset for paper "Spatiotemporal distribution of human trafficking in China and predicting the locations of missing persons"

description: The file (baby_find_home_data.txt) is data obtained from a Chinese public welfare website (https://baobeihuijia.com/) looking for missing children.<br>The code file can be found at the website: https://github.com/whuyao/Where_is_my_baby_code<br>This project uses two C ++ open source libraries (Alglib and CJsonObject). This project complies with the GPL license.<br>Alglib (https://www.alglib.net/) is an open source numerical analysis and data processing library for personal and academic use, developed for the ALGLIB Project Company. Detailed implementation of random forest algorithm used in this project. This library complies with the GPL license.<br>CJsonObject (https://github.com/Bwar/CJsonObject) is a C ++ version of the JSON open source library developed by Bwar based on CJSON. Used in this project for data reading and formatting output. This library complies with the MIT license.
DOI: 10.6084/m9.figshare.21677555.v1
title: Solar PV Data: (a-m) Piecewise segmentation of the I-V curve

description: This dataset corresponds to data which have been extracted from the 60W MSX-60 solar panel model. The model of the PV was obtained using particle swarm optimisation. The accuacy of the model is exellent and attractive as it was benchmarked by experiemal curves provided by the manufacturer. Precisely, the datasheet contain 27x399 data points corresponding to some variables such as Temperature, Irradiance, Maximum power voltage, maximum power current, open circuit voltage, short circuit current and many others. This data was generated for the design and implementation of a solar Phtotovoltaic Emulator (PVE). The authors recommend that the prescribed data offers a broad spectrum for solar panel research, such as MPPT, PV performance studies and many more.
DOI: 10.6084/m9.figshare.22589926.v3
title: RNA-seq Fpkm Data

description: RNA-seq analysis of the fetal lungs, in a delayed labor mouse model, steroid receptor coactivator (SRC)1/SRC2 double knockout (dKO) mouse.
DOI: 10.6084/m9.figshare.28093745.v1
title: Datasets：Global dataset of leaf size and mycorrhizal type

description: Regulation of different hydrothermal factors to global tree leaf size vary with mycorrhizal and foliar types
DOI: 10.6084/m9.figshare.4244513.v1
title: [dataset] Accessibility and Update status of published software: Benefits and missed opportunities

description: The two tables contain data of software packages published in <i>Molecular Ecology Resource </i>(MER) from 2001 to 2015, and in <i>BMC Bioinformatics</i> (2004). These data sets are part of an analysis under the title stated above.
DOI: 10.17632/p63v7psydp
title: Data for: Impaired Chemoreflex Correlates with Decreased c-Fos in Respiratory Brainstem Centers of the Streptozotocin-Induced Alzheimer’s Disease Rat Model

description: Raw data immuno c-Fos ventral brainstem
DOI: 10.17632/phnkzry4hv
title: Nursing PhD matrix

description: The present matrix compiles detailed information on PhD programs in Nursing at various universities in Latin America, with the aim of analyzing and comparing their key characteristics. This comparison allows for the identification of trends in doctoral education in the discipline, prevailing academic approaches, and differences in curricula based on the country and institution.
DOI: 10.6084/m9.figshare.17061419.v1
title: Interview Guide for Patients

description: A set of questions posed to patients with podoconiosis in Rwanda to comprehend their health challenges and understand the treatment alternatives that they have opted
DOI: 10.6084/m9.figshare.5106838.v2
title: Peak areas of individual measurements from 5 experiments

description: This data contains peak areas of individual measurements of the light (or endogenous) and heavy peptides from the 5 experiments.a: Experiment 1_Batch 1b: Experiment 1_Batch 2c: Experiment 2<br>d: Experiment 3<br>e: Experiment 4<br>f: Experiment 5<br>
DOI: 10.6084/m9.figshare.5502175.v1
title: Supplemental Material for Arnold et al. 2017

description: This archive contains all supplemental material for Arnold et al. 2017.
DOI: 10.17632/n2dvsk2jmd
title: Data for: Fundamental Kinetics Model of Acidity-Activity Relation for Ethylene Oligomerization and Aromatization over ZSM-5 Zeolites

description: The product yields of HZSM-5 with SiAl ratio of 25 for ethylene oligomerization and aromatization
DOI: 10.6084/m9.figshare.12570599.v1
title: The chromosome-scale genome assembly of Camptotheca acuminata

description: The chromosome-scale genome assembly of Camptotheca acuminata
DOI: 10.6084/m9.figshare.28639562.v1
title: Molecular dynamics simulations of <i>Pseudomonas aeruginosa </i>PelB barrel on different membranes under various conditions

description: The pathogen <i>Pseudomonas aeruginosa</i> enhances its virulence and antibiotic resistance upon formation of durable biofilms. The exopolysaccharides Pel, Psl and alginate essentially contribute to the biofilm matrix, but their secretion mechanisms are barely understood. Here, we reveal the unique architecture of the outer membrane complex PelBC for Pel secretion, where the essential periplasmic ring of twelve lipoproteins PelC is mounted on top of the nanodisc-embedded β-barrel PelB. In this study, we investigated the dynamics of PelB, especially the extracellular loops PlugS and PlugO, as well as the membrane interactions and tunnel opening in different conditions. The systems were created via CHARMM-GUI web server in atomistic resolution with the CHARMM36m force field. The PelB β-barrel was simulated in different membranes under various conditions:70%/30% POPC/POPG membrane, which mimics the experimental nanodicsmore realistic membranes with LPS for <i>E.coli</i> and <i>P. aeruginosa</i>at pH 3.5 and pH 7.4 with 150 mM NaCl and 25 °Cat 37 °C in 150 mM KClat 25 °C in 150 mM NaCl with and without 100 mM CaCl<sub>2</sub>PlugO and PlugS mutant at 25 °C in 150 mM NaCl for the 70%/30% POPC/POPG membrane<br>In the zip file, we provided the input files for simulations with GROMACS (gro, tpr, top, mdp, force field files) as well as end and tunnel structures of PelB (PDB files).<br>
DOI: 10.6084/m9.figshare.29037176.v2
title: Test

description: Test
DOI: 10.6084/m9.figshare.4898063.v1
title: A case for realigning species limits in the southern Australian whipbirds long recognised as the Western Whipbird (<i>Psophodes nigrogularis</i>)

description: The Western Whipbird (<i>Psophodes nigrogularis</i>) has a highly disjunct west–east distribution across southern Australia. Earlier morphological analyses recognised four subspecies in one species: <i>P. n. nigrogularis</i> and <i>P. n. oberon</i> in south-west Western Australia, and <i>P. n. leucogaster</i> of the Eyre and Yorke Peninsulas and the Murray Mallee, and <i>P. n. lashmari</i>, restricted to Kangaroo Island, both in eastern Australia. Later morphological analyses elevated <i>P. n. nigrogularis</i> to monotypic species rank, and placed the remaining western and two eastern taxa as three subspecies of a second species <i>P. leucogaster</i>. Initial mtDNA analysis questioned both arrangements but could not include all taxa. We used mtDNA sequence data from all available specimens of the entire group (DNA extracted from cryo-preserved tissues, toe-pads and feathers; holotypes excepted) to derive a more stable view of species limits. The samples fell into two strongly divergent but geographically structured groups, completely reflecting the eastern and western components of the distribution. Thus we see merit in treating the two geographical groupings as two species, <i>P. nigrogularis</i> in the west and <i>P. leucogaster</i> in the east, each having two subspecies. Nuclear data could test whether the two western subspecies in particular are genetically isolated or currently exchanging genes.
DOI: 10.6084/m9.figshare.6050105.v3
title: British (GB) postcode polygons for area and district levels

description: Postcode area and district polygons derived from Ordnance Survey Open Data using R and GRASS. Method used was creating voronoi polygons from point postcode data and dissolving boundaries based on postcode area and district attributes.<br><br>Contains OS data © Crown Copyright [and database right] (2018)<br><br>File descriptions:<br><b>postcode_polygons.gpkg</b>: geopackage file containing two polygon layers: postcode_area and postcode_district.<br><b>postcode_aggregator.R</b>: R script to extract area and district from full postcode.<br><b>postcode_aggregator.sh</b>: GRASS/Bash script to convert point postcode data into polygons.<br><b>postcode_overview.png</b>: image of polygons available.<br>
DOI: 10.6084/m9.figshare.7346369.v1
title: Spatial variations in distributive fluvial system architecture of the Upper Cretaceous Marília Formation, SE Brazil

description: X-ray diffraction raw data of palaeosol clay minerals
DOI: 10.7294/qe42-td57
title: Dataset, R codes, and Models in Jags to accompany paper Investigating illegal activities that affect biodiversity: the case of wildlife consumption in the Brazilian Amazon

description: Data on consumption of fish and wild meat by households in urban areas
of the Brazilian Amazon. Socioeconomic data of households in urban areas of the
Brazilian Amazon. R scripts and statistical models used in the analyses to
assess rates of consumption and factors associated with consumption.
DOI: 10.17632/gncg57p5x9
title: Spatiotemporal Analysis of Human Intestinal Development at Single Cell Resolution: Supplementary Data

description: Supplementary data for the study "Spatiotemporal Analysis of Human Intestinal Development at Single Cell Resolution" which utilises single cell RNA-sequencing (scRNA-seq) and spatial transcriptomics (ST) to characterise the origins of human intestinal development between 8 and 22 post conceptual weeks. This supplementary data contains analysed sequencing data that was too large for main publications and details data that was used for comparisons of: cell type marker genes; ST varying genes; Transcription factor (TF) module nodes; Human Phenotype Ontology (HPO) disease comparisons across time and cell clusters; cell cluster comparisons and Gene Ontology Analysis. Specific content: A) An excel file with tabs of supplementary data (overview in first tab) including: 1 Sample overview 2 Endothelial Markers 3 Epithelial Markers 4 Fibroblast Markers 5 Immune Markers 6 Muscle Markers 7 Myofibroblast & Mesothelium markers 8 Neural markers 9 Pericyte Markers 10 Secretory epithelium markers 11 Compartment Markers 12 ST Distance varying genes 13 TF Tree Node Markers 14 TF Location Time Compartment 15 HPO Genes Time Varying 16 HPO Genes Cluster Specific 17 S2 Colon vs TI 18 S2 Time Course 19 Stem Cells TI vs Colon 20 Stem cells vs Stem progenitor 21 Stromal 4 differences 22 CITE-Seq Antibody Sequences 23 Neural GO BP 24 Morphogen modules 25 GO Terms ST dist genes B)Images of ST segments (n=8 tissue segments with low resolution and high resolution images of each)
DOI: 10.17632/ycrmntp78w
title: Open Reading Frames (ORFs) and annotations from the paired-end transcriptome outputs of Savalia savaglia's RNASeq data

description: This dataset contains Open Reading Frames (ORFs) and annotations obtained from the paired-end transcriptome outputs of Savalia savaglia's RNASeq data. The dataset includes the following files:

From TransDecoder analyses:

• Assembly_Ss_PE.Trinity.fasta.transdecoder.cds: Nucleotide sequences for coding regions of the final candidate ORFs, obtained with TransDecoder from paired-end transcriptome outputs of Savalia savaglia's RNA-Seq.

• Assembly_Ss_PE.Trinity.fasta.transdecoder.gff3: Positions within the target transcripts of the final selected ORFs, obtained with TransDecoder from paired-end transcriptome outputs of Savalia savaglia's RNA-Seq.

• Assembly_Ss_PE.Trinity.fasta.transdecoder.pep: Peptide sequences for the final candidate ORFs, obtained with TransDecoder from paired-end transcriptome outputs of Savalia savaglia's RNA-Seq.

• Assembly_Ss_PE.Trinity.fasta.transdecoder.bed: BED-formatted file describing ORF positions, suitable for viewing using GenomeView or IGV, obtained from paired-end transcriptome outputs of Savalia savaglia's RNA-Seq data.

• blastp.outfmt6.w_pct_hit_length: File providing percentages of hit lengths from BLASTp results of the paired-end de novo assembly of Savalia savaglia. It includes the top hit's length and the percentage of the length covered in the alignment.

• pfam.domtblout: PFAM domain annotations for the predicted proteins in the paired-end de novo assembly of Savalia savaglia.

From Trinotate analyses:

• myTrinotate_PE_Ss.tsv: Comprehensive annotation file with results from Trinotate, including protein domain identification and other annotations from the paired-end de novo assembly of Savalia savaglia.

• Trinotate_PE_Ss_report.cXp_summary.html: HTML report summarizing the annotation results from Trinotate, providing an overview of the functional annotations and transcript features of the paired-end de novo assembly of Savalia savaglia.
DOI: 10.6084/m9.figshare.11513178.v2
title: High spatiotemporal resolution mapping of global urban change from 1985 to 2015

description: This dataset includes three parts:<br>(1) The mapped global annual urban dynamics (GAUD) and green recovery from 1985 to 2015 at a 30-m resolution. This part of data is organized by 10-degree grids (totally 224).Shapefiles of 10-degree grids can be found in "grids_world.zip".Urban expansion data is packaged in "urban_grid_i.zip" (i ranges from 0 to 223). Green recovery data is packaged in "green_grid_0-223.zip".Their format is GeoTiff, and for each pixel, values from 1985 to 2015 demonstrate the urbanized or green recovery year, while 0 means no data.<br>(2) The interpreted samples of urban extent in 1985 and 2015, and urbanized year during 1985 and 2015. This part of data is for examining the accuracies of our data fusion and temporal segmentation approach. Interpreted urban extent is packaged in "Ref_tif_clip_1985.rar" and "Ref_tif_clip_2015.rar".Its format is GeoTiff, and for each pixel, value 1 means urban areas, while 0 means non-urban areas.Valid samples of urbanized year can be found in "validation_urbanized_year.xls".<br>(3) A demo of NUACI calculation and urbanized years dectection can be found at link:https://code.earthengine.google.com/1c901129fa8c9d81b292824e8fb4ff1c<br>22.05.2021:Solved the problem of stripe after image mosaic (grid 138)<br><br>
DOI: 10.6084/m9.figshare.24614223.v2
title: Data and code: Herbivory exacerbates pollen limitation by isolating unconsumed plants from prospective mates

description: Data and R code necessary to replicate figures and analyses presented in the following manuscript: Beck and Wagenius. <i>In press. </i>Herbivory exacerbates pollen limitation by isolating unconsumed plants from prospective mates. American Journal of Botany. <br>
DOI: 10.6084/m9.figshare.26388823.v2
title: Regulation of tryptophan-indole metabolic pathway in<i> </i>the <i>Porphyromonas gingivalis</i> virulence and microbiota dysbiosis in periodontitis

description: Data accompanying the paper.
DOI: 10.6084/m9.figshare.3520991.v1
title: Appendix C. Variance decomposition analysis for the variables of the TRM function.

description: Variance decomposition analysis for the variables of the TRM function.
DOI: 10.17632/hwyxbv9rrb
title: Data for: ICT and environmental quality in Sub-Saharan Africa

description: The database is sourced from the World Development Indicators, annually usued by the World Bank. Data is on a sample of 21 Sub-Saharan Africa over the 1996-2014 period.
DOI: 10.17632/v9nmjfz94b
title: BCG vaccination provides protection against IAV but not SARS-CoV-2. Kaufmann et al.

description: Table S1 Dataset for Manuscript Kaufmann, Khan, et al., Cell Reports, 2021: BCG vaccination provides protection against IAV but not SARS-CoV-2

Summary
Since the vast majority of species solely rely on innate immunity for host defense, it stands to reason that a critical evolutionary trait like immunological memory evolved in this primitive branch of our immune system. There is ample evidence that vaccines such as Bacillus Calmette-Guerin (BCG) induce protective innate immune memory responses (trained immunity) against heterologous pathogens. Here we show that while BCG vaccination significantly reduces morbidity and mortality against influenza A virus (IAV), it fails to provide protection against SARS-CoV-2. In contrast to IAV, SARS-CoV-2 infection leads to unique pulmonary vasculature damage facilitating viral dissemination to other organs, including the bone marrow (BM), a central site for BCG-mediated trained immunity. Finally, monocytes from BCG-vaccinated individuals mount an efficient cytokine response to IAV infection, while this response is minimal following SARS-CoV-2. Collectively, our data suggest that the protective capacity of BCG vaccination is contingent on viral pathogenesis and tissue tropism.
DOI: 10.6084/m9.figshare.17067752.v1
title: Datasets and input for "Elucidating the germanium distribution in ITQ-13 zeolites by density functional theory"

description: <b>Description of files:</b><br><b><br></b><i>1_Sample_Inputs.zip</i> <br>Sample inputs for CP2K optimisations and AIMD simulations as well as Gaussian NMR calculations; includes CIF files of unoptimised ITQ-13_SiO<sub>2</sub> (after removal of disorder) and of DFT-optimised ITQ-13_SiO<sub>2</sub><br><i>2_ITQ-13_kGe_structures.zip <br></i>DFT-optimised structures of ITQ-13 models containing <i>k</i> Ge atoms per unit cell (<i>k</i> = 1, 2, 3, 4, 6, 8)<br><i>3_ITQ-13_SiO2_MD.zip<br></i>AIMD trajectories of ITQ-13_SiO<sub>2</sub> (<i>T</i> = 298 K, 408 K)<br><i>4_ITQ-13_kGe_Y_ZZZ_MD.zip</i> <br>AIMD trajectories of corresponding model of Ge-containing ITQ-13 (<i>T</i> = 298 K, 408 K)
DOI: 10.6084/m9.figshare.23934933.v1
title: Dataset for: AutoFocus: A hierarchical framework to explore multi-omic disease associations spanning multiple scales of biomolecular interaction

description: Preprocessed and concatenated metabolomics, proteomics, and glycomics for the article "<b>AutoFocus: A hierarchical framework to explore multi-omic disease associations spanning multiple scales of biomolecular interaction</b><b>"</b><b>Code repository:</b>https://github.com/krumsieklab/autofocus
DOI: 10.17632/9v2s9b2ym7
title: Data on Water Conservation Behaviour a case study in India

description: The file uploaded contains data on WCB of households in India
DOI: 10.6084/m9.figshare.24047208.v2
title: The geophysical properties of FeH<sub><em>x</em></sub> phases under inner core conditions

description: This is data repository for "The geophysical properties FeH<sub><em>x</em></sub> phases under inner core conditions".
DOI: 10.6084/m9.figshare.26828956.v2
title: CldNetV2 - 202209

description: Retrieval of all-day cloud property based on satellite remote sensing dataGithub page: https://github.com/metdai/PMD-CldNetV2
DOI: 10.6084/m9.figshare.27257871.v1
title: Data for: Limited mercury (Hg) partitioning into bitumen and efficient gaseous Hg reabsorption in early thermal maturation of organic-rich mudrocks

description: Raw data for all figures and tables in the manuscript by Indraswari et al. submitted to Geochimica et Cosmochimica Acta as "Limited mercury (Hg) partitioning into bitumen and efficient gaseous Hg reabsorption in early thermal maturation of organic-rich mudrocks".
DOI: 10.6084/m9.figshare.14906640.v1
title: appendicitis scoring systems

description: first output
DOI: 10.6084/m9.figshare.16556145.v2
title: body mass and beak size data for the world's birds

description: bird beak size in units of centroid size (mm) and body mass in grams, both log-transformed.
DOI: 10.6084/m9.figshare.25941610.v1
title: <b>Job Crafting and satisfaction with life: A Mediation Model Through the Meaning of Work.</b>

description: Job Crafting and satisfaction with life: A Mediation Model Through the Meaning of Work.
DOI: 10.6084/m9.figshare.28112123.v1
title: Chromosome 8 Disease Challenge Data

description: Disease challenge and field deployment data and associated R code from the Chromosome 8 disease project. Data and code are provided for disease challenges at 48 hours post fertilization, 6 days post fertilization, 5 months, and 6 months. Disease challenges were conducted with OsHV-1 (Tomales variant), OsHV-1 microvariant, and <i>Vibrio coralliilyticus</i>. Field plantings were conducted with spat at 3.5 (Tomales) and 4.5 (Willapa) months and sampled for survival and growth data at 8 (Willapa) and 10 (Tomales) months. OsHV-1 prevalence and viral load data and code is included for the Tomales Bay field planting.
DOI: 10.6084/m9.figshare.29114117.v1
title: hg38_rosetta_file.zip

description: hg38_rosetta_file.zip
DOI: 10.17632/dr7ydy9xbk
title: UFSC OCPap: Papanicolaou Stained Oral Cytology Dataset (v4)

description: The UFSC OCPap dataset comprises 9,797 labeled images of 1200x1600 pixels acquired from 5 slides of cancer diagnosed and 3 healthy of oral brush samples, from distinct patients.

The slides were provided by the Hospital Dental Center of the University Hospital Professor Polydoro Ernani de São Thiago of Federal University of Santa Catarina (HU-UFSC) and this research was approved by the UFSC Research Ethics Committee (CEPSH), protocol number 23193719.5.0000.0121. All patients were previously approached and informed about the study objectives. Those who agreed to participate signed an Informed Consent Form.
DOI: 10.17632/gcjtzfv4s3
title: MACSFeD – A database of mosquito acoustic communication and swarming features

description: Associated database and script for mosquito acoustic communication and swarming feature platform