cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7488/ds/3782
title: Co-OPT: Consortium for the Study of Pregnancy Treatments: Antenatal corticosteroids cohort - Data Dictionary

description: This data dictionary accompanies patient data files from the ongoing Co-Opt study which are held elsewhere on secure systems. The Consortium for the Study of Pregnancy Treatments (Co-OPT) collaboration has been established to investigate the effects of treatments given in pregnancy. The research is addressing knowledge gaps through individual patient data meta-analysis and linkage studies using data extracted from electronic health records, birth registers, and randomised controlled trials.
DOI: 10.7488/ds/3089
title: Tanzania friction surface

description: The friction (cost allocation/effort) surface was assembled using three primary input datasets on land surface characteristics that help or hinder travel speeds: land cover, roads and topography. Landcover data were from the ESA CCI Landcover map for Africa 2016, roads data were merged from Open-Street Map (OSM) and the MapwithAi project and topography was taken from the SRTM Digital Elevation Model. The costs for travel consider walking/pedestrian travel in this data, but the software is supplied with an easy to change set of travel speeds so they can be adapted easily to consider travel speeds reflecting motorised transportation use. We have reduced the walking speeds to reflect the fact that adults walking with children move approximately 22% slower. There are two friction surfaces provided, the first defines open water as a barrier to travel and so the speed allocated to this landcover is NA. The second defines open water with an associated speed (1 km/hr). To create a walking speed array, first the road walking speeds were used and then missing values were filled with landcover walking speed values. This walking speed array was multiplied by the slope impact grid. The speed for each cell was converted from kilometers per hour to meters per second. Finally, the time (in seconds) to walk across each cell was calculated. The outputs are 20-m spatial resolution geotiffs indicating the time to walk across each cell. They are subsequently used in the least cost path analysis to estimate travel time to the nearest health facilities. However,these friction surfaces can be used by others to estimate travel speed to other destinations in a GIS.
description: cost_surface_Tanz_ALL.tif - friction surface with water masked as a travel option; cost_surface_water_Tanz_ALL.tif - friction surface with water assigned a travel speed of 1 km/hr.
DOI: 10.7488/ds/3514
title: Instances for "Optimal Allocation of Demand Response Considering Transmission System Congestion"

description: Electricity demand response (DR) is the capability of the electricity consumers to adjust their consumption according to the needs of the grid. Demand response is especially important as a means to mitigate the variability in renewable generation. To adequately integrate DR and renewable generation into the grid operations, an intermediary entity called aggregator coordinates the small-scale DR to efficiently allocate these resources and ensure the viability of DR provision. These instances were designed to demonstrate the capabilities of the proposed optimization model to maximise the profit of the aggregator.
DOI: 10.7488/ds/3092
title: Tanzania travel time to nearest health centre

description: Travel time surface was estimated using the cost allocation (friction surfaces) which used three primary input datasets on land surface characteristics that help or hinder travel speeds: land cover, roads and topography. This Geotiff is a 20-m spatial resolution surface where each pixel has a value which is the time in seconds to travel to the nearest health centre documented in the paper by Maina et al. (2020) doi: 10.1038/s41597-019-0142. According to the United Republic of Tanzania Ministry of Health and Social Welfare Health sector strategic plan (http://www.tzdpg.or.tz/fileadmin/documents/dpg_internal/dpg_working_groups_clusters/cluster_2/health/Key_Sector_Documents/Induction_Pack/Final_HSSP_IV_Vs1.0_260815.pdf) health centres are found at theward level they can admit patients and sometimes provide surgical services.
description: service_area_Tanz_Disp.tif - travel time in seconds to the nearest dispensary facility from every pixel; Travel Time to Dispensary.jpg - jpeg image of the geotiff file service_area_Tanz_Disp.ti to demonstrate what the file should look like.
DOI: 10.7488/ds/3510
title: The carbon budget of the managed grasslands of Great Britain - informed by earth observations
title: Model-estimated carbon pools and fluxes of a sample of grassland ecosystems in Great Britain (2017-2018)

description: Model inputs, model code and aggregated model outputs (seasonal, annual) for every grassland field simulated (2017-2018) in "Myrgiotis et al. The carbon budget of the managed grasslands of Great Britain - informed by earth observations, Biogeosciences, 2022". Input files include (1) climate data (sitecode_M.npy) and (2) satellite based observations of Leaf Area Index (sitecode_O.pkl). Model code written in fortran. Model outputs (i.e. carbon pools, fluxes and balance for 2017 and 2018) aggregated annually (annual_outputs.csv) and monthly (annual_outputs.csv).
DOI: 10.7488/ds/3083
title: Zimbabwe Travel Time to any health facility Map Output

description: A 20 m spatial resolution geotiff of travel time to the nearest of any tyoe of health facility in Zimbabwe. The data was generated using the Child Poverty and Access to Services (CPAS) software (10.5281/zenodo.4638563) and was created as part of the CPAS project within the Data for Children Collaborative. The travel time is calculated assuming walking speeds and has been reduced by 22% to reflect the fact that children do not walk as fast adults. A full description will be available in a paper that has been submitted for review.
DOI: 10.7488/ds/3090
title: Tanzania travel time to any health facility

description: Travel time surface was estimated using the cost allocation (friction surfaces) which used three primary input datasets on land surface characteristics that help or hinder travel speeds: land cover, roads and topography. This Geotiff is a 20-m spatial resolution surface where each pixel has a value which is the time in seconds to travel to the nearest health facility documented in the paper by Maina et al. (2020) doi: 10.1038/s41597-019-0142.
description: service_area_Tanz_ALL.tif - travel time in seconds to the nearest helth facility of any type from every pixel. Travel time to any health facility.jpg - jpeg image of the geotiff file service_area_Moz_All.tif to demonstrate what the file should look like.
DOI: 10.7488/ds/3091
title: Tanzania travel time to nearest dispensary

description: Travel time surface was estimated using the cost allocation (friction surfaces) which used three primary input datasets on land surface characteristics that help or hinder travel speeds: land cover, roads and topography. This Geotiff is a 20-m spatial resolution surface where each pixel has a value which is the time in seconds to travel to the nearest dispensary documented in the paper by Maina et al. (2020) doi: 10.1038/s41597-019-0142. According to the United Republic of Tanzania Ministry of Health and Social Welfare Health sector strategic plan (http://www.tzdpg.or.tz/fileadmin/documents/dpg_internal/dpg_working_groups_clusters/cluster_2/health/Key_Sector_Documents/Induction_Pack/Final_HSSP_IV_Vs1.0_260815.pdf) dispensaries are found at the village level and provide Preventative and curative outpatient services.
description: service_area_Tanz_Disp.tif - travel time in seconds to the nearest dispensary facility from every pixel; Travel Time to Dispensary.jpg - jpeg image of the geotiff file service_area_Tanz_Disp.ti to demonstrate what the file should look like.
DOI: 10.7488/ds/3785
title: Hydrodynamics of Three Slender Models Resembling Pacific Canoe Hulls
title: Raw and final data, and figures

description: This dataset includes: (1) the raw data of the hydrodynamic forces measured in the towing tank for three slender hulls, as well as the computation of force coefficients and plots; (2) the CAD models of the three hulls.
DOI: 10.7488/ds/3082
title: Uganda Travel Time to nearest Level IV health centre & Hospital Map Output

description: A 20 m spatial resolution geotiff of travel time to level III health facilities in Uganda. Level III facilities typically have Qualified nurses, Nurse aids and Clinical officers (physicians assistants) present withing them. The services that Level III facilities typically provide are; Basic laboratory services, Maternity care, Inpatient care. Hospitals have Medical Doctors, Medical Nursers and paramedical officers present and offer the following services: preventative and general medical and surgical services as well as limited specialist services. The data was generated using the Child Poverty and Access to Services (CPAS) software (10.5281/zenodo.4638563) and was created as part of the CPAS project within the Data for Children Collaborative. The travel time is calculated assuming walking speeds and has been reduced by 22% to reflect the fact that children do not walk as fast adults. A full description will be available in a paper that has been submitted for review.
DOI: 10.7488/ds/3756
title: Visualising the Bacterial Pangenome: an analysis of the genetic content of Staphylococcus aureus (2022 Thesis Supplementary Data s1856921)

description: This dataset includes Supplementary Data in support of the University of Edinburgh thesis titled “Visualising the Bacterial Pangenome: an analysis of the genetic content of Staphylococcus aureus”. # Graphia software # Tom C. Freeman, Sebastian Horsewell, Anirudh Patir, Josh Harling-Lee, Tim Regan, Barbara B. Shih, James Prendergast, David A. Hume, Tim Angus; "Graphia: A platform for the graph-based visualisation and analysis of high dimensional data" https://doi.org/10.1371/journal.pcbi.1010310 . The ".graphia" format is a compressed network graph file format for use in the software Graphia. The User Guide is available at: https://graphia.app/. The software is open source and available to all users free of any charge.
DOI: 10.7488/ds/3511
title: SUPERSEDED - Additional file for 'Efficient comparison of evolutionary trees during phylogenetic reconstruction'

description: ## This item has been replaced by the one which can be found at https://doi.org/10.7488/ds/3766 ## Supplementary data for Guscott JC, Kim CS, Pinheiro M, Wood C, Winn MD, Guntoro F, Meagher TR, Barker D, 'Efficient comparison of evolutionary trees during phylogenetic reconstruction' (in prep.).
DOI: 10.7488/ds/3449
title: Field-Measurements aligned to the implementation of a tidal energy converter’s power performance assessment (IEC 62600-200 PPA Type B)

description: As part of the ETI Reliable Data Acquisition for Tidal Platform (ReDAPT) project a multi-year field measurement campaign was carried out, comprising multiple seabed deployments of acoustic Doppler Current Profilers (ADCPs) proximal to an operating 1MW commercial prototype tidal turbine. This dataset comprises two ADCP deployments (600kHz RDI Workhorse Sentinel 4-Beam) that targeted the (at the time) recently released IEC TS 62600-200:2013 Power Performance Assessment guidance. The deployment followed the guidance for a Type B implementation, i.e., ADCP instruments positioned inline and either side of the tidal turbine rotor plane. The data has been re-processed and QC’d under the EC H2020 RealTide project.
DOI: 10.7488/ds/3133
title: Non-Fermi liquid behaviour below the Neel temperature in the frustrated heavy Fermion magnet UAu2
DOI: 10.7488/ds/3145
title: Viking II Data Dictionary
title: Viking Genes Data Dictionary

description: VIKING II was made possible thanks to Medical Research Council (MRC) funding. We aim to better understand what might cause diseases such as heart disease, eye disease, stroke, diabetes and others by inviting 4,000 people with 2 or more grandparents from Orkney and Shetland to complete a questionnaire and provide a saliva sample. This data dictionary outlines what volunteers were asked and indicates the data you can access. To access the data, please e-mail viking@ed.ac.uk.
DOI: 10.7488/ds/3126
title: Methylome-wide association study of early life stressors and adult mental health

description: The environment and events that we are exposed to in utero, during birth and in early childhood influence our future physical and mental health. The underlying mechanisms that lead to these outcomes are unclear, but long-term changes in epigenetic marks, such as DNA methylation, could act as a mediating factor or biomarker. DNA methylation data was assayed at 713,522 CpG sites from 9,537 participants of the Generation Scotland: Scottish Family Health Study, a family-based cohort with extensive genetic, medical, family history and lifestyle information. Methylome-wide association studies of eight early life environment phenotypes and two adult mental health phenotypes (major depressive disorder and brief resilience scale) were conducted using DNA methylation data collected from adult whole blood samples. Two genes involved with different developmental pathways (PRICKLE2 and ABI1) were annotated to CpG sites associated with preterm birth (P &lt; 1.27×10-9). A further two genes important to the development of sensory pathways (SOBP and RPGRIP1) were annotated to sites associated with low birth weight (P &lt; 4.35×10-8). The examination of methylation profile scores and genes and gene-sets annotated from associated CpGs sites found no evidence of overlap between the early life environment and mental health conditions. Birth date was associated with a significant difference in estimated lymphocyte and neutrophil counts. Previous studies have shown that early life environments influence the risk of developing mental health disorders later in life; however, this study found no evidence that this is mediated by stable changes to the methylome detectable in peripheral blood. The files below contain the summary statistics calculated for each of the phenotypes examined using two different methylation-wide association study approaches (MWAS 1 and MWAS 2).
description: The 10 MWAS 1 files each contain a header row and then each subsequent row provides the association study results for 713522 CpG sites. The columns are ID CHR MAPINFO P.Value beta se N and are space delimited. ID is the the CpG name, CHR is the chromosome location, MAPINFO is the base pair position based on genome assembly GRCh37 (hg19), P.Value is the P-value for the association between the CpG site and the phenotype, beta is the effect size, se is the standard error, and N is the number of individuals assessed in the analysis. The 10 MWAS 2 files each contain a header row and then each subsequent row provides the association study results for 713522 CpG sites. The columns are Chr Probe bp Gene Orientation b se p and are space delimited. Chr is the chromosome location, Probe is the the CpG name, bp is the base pair position based on genome assembly GRCh37 (hg19), Gene is annotation for the CpG site provide by OmicS-data-based Complex trait Analysis (OSCA), Orientation is the orientation reported by OSCA, b is the effect size, se is the standard error and p is the P-value for the association between the CpG site and the phenotype.
DOI: 10.7488/ds/3217
title: The Behaviour of Occupied and Void Space in Molecular Crystal Structures at High Pressure

description: The overall volume of a crystal structure can be partitioned into occupied (‘network’) and unoccupied (‘void’) space. Trends with pressure are very sensitive indicators of phase transitions, correlating closely with spectroscopic data, and can even reveal effects premonitory to loss of long-range order. This data set contains plots of network and void volumes as a function of pressure for crystal structures taken from The Cambridge Structural Database.
description: The data set consists of images of network and void volume (in Å**3) as a function of pressure (in GPa). The Cambridge Database reference codes are also indicated in the title. Hence the file ABULIT_network.png contains the network volume plot for CSD Refcode ABULIT.
DOI: 10.7488/ds/3150
title: Untangling the physics of water transport in boron nitride nanotubes

description: LAMMPS data file and input script required to setup and run simulations carried out in the paper: Mistry, Pillai, Mattia and Borg, 'Untangling the physics of water transport in boron nitride nanotubes', Nanoscale.
DOI: 10.7488/ds/3508
title: Edinburgh Speech Production Facility (ESPF) DoubleTalk

description: The Edinburgh Speech Production Facility DoubleTalk dataset contains synchronized recordings of speech movements over time and audio. Data were collected using two Carstens AG500 electromagnetic articulometers and high quality audio equipment. Data analysis was made possible by Articulate Instruments commercially available data analysis software. The ESPF DoubleTalk project was a dialogue study between speakers of Southern Standard British English and Scottish English (inc. a pilot study with speakers of American English and Northern English). It ran from 2010-03-01 to 2010-08-31. All participants were native English speakers.
description: Please see README.txt
DOI: 10.7488/ds/3515
title: Spatial representation by ramping activity of neurons in the retrohippocampal cortex

description: The dataset is from an investigation of activity of neurons in the retrohippocampal cortices during recall of a spatial memory. During the experiment mice carry out a task in a virtual reality environment in which they recall a reward location. The recordings are made using tetrodes targetted to the retrohippocampal cortices. The data are then processed to extract spike times. Code for analysis of the data is here: https://github.com/MattNolanLab/Ramp_analysis
DOI: 10.7488/ds/3512
title: ESPF DoubleTalk PCA processed data for Tau analysis

description: Please see README.txt for details of this dataset. The data are derived from the ESPF DoubleTalk corpus, https://doi.org/10.7488/ds/3508
DOI: 10.7488/ds/3465
title: Dyslexia GWAS Summary Statistics for top 10K SNPs

description: Reading and writing are crucial life skills but roughly 1 in 10 children are affected by dyslexia, which can persist into adulthood. Family studies of dyslexia suggest heritability up to 70%, yet few convincing genetic markers have been found. Our genome-wide association study of 51,800 adults self-reporting a dyslexia diagnosis and 1,087,070 controls identified 42 independent significant loci: 15 in genes linked to cognitive ability/educational attainment; 27 novel and potentially more specific to dyslexia. Twenty-three loci (13 novel) were validated in independent cohorts of Chinese and European ancestry. Genetic aetiology of dyslexia was similar between sexes, and genetic covariance with many traits was found, including ambidexterity, but not neuroanatomical measures of language-related circuitry. Dyslexia polygenic scores explained up to 6% of variance in reading traits, and might in future contribute to earlier identification and remediation of dyslexia.
description: File header: assay.name scaffold position effect_allele other_allele effect stderr pvalue avg.rsqr Notes: assay.name = in most cases, a dbSNP build 146 rsID scaffold = chromosome number effect = log odds avg.sqr = The average imputation r2 across all batches of imputation results, a measure of overall imputation quality.
DOI: 10.7488/ds/3455
title: Geometry generation for DHV tidal turbine – Basic Python code and implementation in ANSYS-CFX and Rhinoceros

description: The flow speed which acts on tidal turbines can be increased based on a wide range of approaches. A unique feature of the Davidson Hill Venturi (DHV) turbine is the Venturi shaped structure is produced from individual hydrofoils. This concept includes further parameters, which can be in- dividually changed to find an overall optimum solution. As part of the research project, a general geometry description is provided, which describes the form of the structure by utilising two sym- metrical bell curves. A Phyton script allows the generation of this geometry based on simple inputs. Furthermore, the exemplary integration of this in ANSYS-CFX via SpaceClaim is provided in this dataset. This includes the script file, an example Workbench and a video showing the build-up. An additional Grasshopper code allows to integrate the geometry generation in the CAD software Rhinoceros to allow more complex geometries. The presented data can help to improve the gener- alisation of future optimisation work on this tidal turbine.
DOI: 10.7488/ds/3157
title: Associated date for Macrocylases as synthetic tools for ligand synthesis

description: Dataset containing additional compound characterisation data to support Brewster RC, Labeaga IC, Soden CE, Jarvis AG. 2021 Macrocylases as synthetic tools for ligand synthesis: enzymatic synthesis of cyclic peptides containing metal-binding amino acids. R. Soc. Open Sci. 8: 211098 Improving the sustainability of synthesis is a major goal in green chemistry, which has been greatly aided by the development of asymmetric transition metal catalysis. Recent advances in asymmetric catalysis show that the ability to control the coordination sphere of substrates can lead to improvements in enantioselectivity and activity, in a manner resembling the operation of enzymes. Peptides can be used to mimic enzyme structures and their secondary interactions and they are easily accessible through solid-phase peptide synthesis. Despite this, cyclic peptides remain underexplored as chiral ligands for catalysis due to synthetic complications upon macrocyclization. Here, we show that the solid-phase synthesis of peptides containing metal-binding amino acids, bipyridylalanine (1), phenyl pyridylalanine (2) and N,N-dimethylhistidine (3), can be combined with peptide macrocylization using peptide cyclase 1 (PCY1) to yield cyclic peptides under mild conditions. High conversions of the linear peptides were observed (approx. 90%) and the Cu-bound cyclo(FSAS(1)SSKP) was shown to be a competent catalyst in the Friedel-Crafts/conjugate addition of indole. This study shows that PCY1 can tolerate peptides containing amino acids with classic inorganic and organometallic ligands as side chains, opening the door to the streamlined and efficient development of cyclic peptides as metal ligands.
description: See Readme.txt file
DOI: 10.7488/ds/3469
title: Plot level Aboveground biomass on Mangrove Forests in the Niger Delta

description: This dataset includes twenty-five 0.25 ha plots of Aboveground biomass (AGB) calculated using diameter at breast height measurements (DBH) and allometric equations published by Komiyama et al, 2005.
description: This dataset contains three files: * "all_dbh_data.csv" - Stem diameter of mangrove stems from 25 o.25ha plots * "Field AGB Plots.kmz" - Location of 25 plots along the Niger Delta * "plot data.csv" - Plot-wise AGB in t/ha