cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9738839.v2
title: SMSNet's training datasets (WCU-MS-ALL)

description: This is the WCU-MS-ALL dataset of MS/MS spectra for unmodified peptides and modified peptides with oxidation of M or phosphorylation of STY, aggregated from the dataset used to train and evaluated SMSNet (https://pubmed.ncbi.nlm.nih.gov/31591261/).<br><br>Each row of the file contains raw file ID (this can be used to group spectra from the same experiment), PEP score (from MaxQuant's evidence), peptide sequence (MaxQuant's style), modification (MaxQuant's style), charge state, precursor m/z, retention time, and the observed MS/MS peaks in csv format.<br><br><b>Updated 9 December 2021</b>Due to limited 20GB constraint, we have to migrate the files to our Google Drive instead. Please find the files, split into 8 parts, at https://drive.google.com/drive/folders/19E6Wz_xpRHRCYiolsduT8z74C6niOrbW?usp=sharing
DOI: 10.17632/9tkynnhj23
title: Data set for "Application of Online Booking Data to Hotel Revenue Management"

description: This is a dataset used in Section 3.2 "Estimation" of "Application of Online Booking Data to Hotel Revenue Management". The dataset is created based on raw data by the procedure described in Section 3.1 "Data Set".
DOI: 10.17632/h3yfxtwkjz
title: Alternating current excitation and voltage measurements - Samsung-30T INR 21700 Battery

description: The data collection is performed using an Arbin BT-2000 battery cycler. The s.d. of the voltage and current measurement error of the device is approximately 0.00033 V and 0.00025 A, respectively. The sampling time of the data is ∆ = 1 seconds; this resulted in close to 7,200 voltage and current measurements. The VI data can be visualized using the demoVI.m file.
DOI: 10.6084/m9.figshare.11971281.v1
title: L2 Section, Sample 57. 86 Year Old Female

description: A 3 mm thick para-sagittal slice of L2 vertebra from an 86 year old female embedded in PMMA then micro-milled block surfaces carbon coated for quantitative 20kV BSE SEM.<br><br>Later polished to remove coating and then imaged with high-contrast X-Ray Micro-tomography at 90 kV with 30 micron voxel size.<br>There is also a 3D VR model availablehttps://skfb.ly/6QVUA<br>
DOI: 10.6084/m9.figshare.17097035.v4
title: Entodon and Hypnum genome project

description: Annotation of Entodon and Hypnum genomes
DOI: 10.6084/m9.figshare.19522147.v1
title: Trabzon 3D City Model

description: 3D City Model of the Trabzon.
DOI: 10.6084/m9.figshare.20043665.v12
title: AQME paper examples

description: This dataset contains example for our newly developed program AQME : Automated Quantum Mechnical Envirnments for chemical analysis. We show the utility of independent modules in multiple end-to-end examples covering both jupyter notebook and HPC computing.
DOI: 10.6084/m9.figshare.25460962.v1
title: Anonymized data for the analysis of "Entropy-based detection of Twitter echo chambers"

description: (Anonymized) dataset supporting the analysis of the manuscript "Entropy-based detection of Twitter echo chambers".Abstract: Echo chambers, i.e. clusters of users exposed to news and opinions in line with their previous beliefs, were observed in many online debates on social platforms. We propose a completely unbiased entropy-based method for detecting echo chambers. The method is completely agnostic to the nature of the data. In the Italian Twitter debate about the Covid-19 vaccination, we find a limited presence of users in echo chambers (about 0.35% of all users). Nevertheless, their impact on the formation of a common discourse is strong, as users in echo chambers are responsible for nearly a third of the retweets in the original dataset. Moreover, in the case study observed, echo chambers appear to be a receptacle for disinformative content.
DOI: 10.6084/m9.figshare.27151218.v1
title: Specific heat of VCl3 single crystal

description: Data measured at PPMS 14 machine from Quantum Design.Sample description:Mass: m = 2.93 mgComposition: VCl<sub>3</sub>Orientation: Field applied along crystallographic <i>c</i>-axisFile description:20240530_VCl3_HC_pulses.raw - Raw data produced by the MultiView software with the Heat Capacity option. ASCII format.Puck921.cal - Calibration of the Puck, where the data were measure.
DOI: 10.6084/m9.figshare.28397981.v3
title: Assembly and annotation of Napoleon Oak

description: Diploid assembly with the prefix: assemblyHaploid assembly with the prefix: Quercus_roburFigure S11 - IGV screenshots of somatic mutations
DOI: 10.6084/m9.figshare.7634762.v1
title: Expression profile and TCR typing information of single T cells derived from 12 treatment-naive colorectal cancer patients

description: The expression profile contains 10,805 cells and 12,547 genes, of which the expression values were quantified by log2 (TPM+ 1).The table of sample characteristics includes the information of patient origins, cell types, clusters and TCR sequences of single T cells.The table of marker genes contains signatures for each T cell clusters identified by ANOVA analysis.
DOI: 10.6084/m9.figshare.9751904.v1
title: Raw RNA sequencing data for Hargrave et al 2019

description: Raw RNA sequencing dataset spilt into files comparing either UN with LPS or Toxoplasma gondii and also LPS with Toxoplasma gondii. Each comparison folder should have gene expression tables of all genes, gene expression table of just significant genes, the FPKM values of all genes and then the FPKM of just top genes. Type II Toxoplasma gondii was used and DCs were co-cultured for 6 hours before RNA isolation was performed. Primary analysis was performed by GATC biotech
DOI: 10.6084/m9.figshare.3527186.v1
title: Supplement 1. R software packages for boosted trees.

description: File List gbmplus_1.5-17.zip R package suitable for installation on Windows OS. gbmplus_1.5-17.tar.gz R package sources suitable for installation on all supported OS(Linux/Unix/Windows). softcorals.csv Data for soft coral analysis in paper. Variable names are in row 1 and details of all variables are supplied in the paper. barramundi.csv Data for barramundi analysis in Appendix One. Variable names are in row 1 and details of all variables are supplied in Appendix One. Description Package: gbmplus Version: 1.5-17 Date: 2006-07-01 Title: Generalized Boosted Regression Models Author: Greg Ridgeway Modifications of package gbm by Glenn De'ath Maintainer: Glenn De'ath Depends: R (&gt;= 2.1.0), lattice Description: This package implements extensions to Freund and Schapire's AdaBoost algorithm and J. Friedman's gradient boosting machine. Includes regression methods for least squares, absolute loss, logistic, Poisson, Cox proportional hazards partial likelihood, and AdaBoost exponential loss. Includes aggregated boosting (GD). License: GPL (version 2 or newer) URL: http://www.i-pensieri.com/gregr/gbm.shtml Packaged: Tue Jul 4 11:34:54 2006; Glenn The most flexible, accessible environment with access to tree and boosting software is the R software. R is a freely available GNU version of the S language, includes extensive statistical computing and graphics procedures, and runs on a wide variety of UNIX platforms, Windows and MacOS. R packages for fitting classification and regression trees include rpart, mvpart and tree. For boosting, the packages gbm and boost are available and gbmplus (a modified version of gbm) that implements aggregated boosting and is available from here or the author at g.death@aims.gov.au. The R packages randomForest and ipred are available for random forests and bagging. Commercial software for trees, boosting and random forests is available from Salford Systems. The package gbmplus is available from these Ecological Archives in zip format for Windows users and tar format for Linux users.
DOI: 10.6084/m9.figshare.900384.v1
title: Old Chemistry Set Manuals

description: The files in the file set are old chemistry set manuals I found on the www.
DOI: 10.17632/687g6r8ct3
title: Ruminal microbiome-host metabolome crosstalk the unsaturated fatty acid synthesis in buffalo milk

description: Supplementary material for the academic paper "Ruminal microbiome-host metabolome crosstalk the unsaturated fatty acid synthesis in buffalo milk" published in the Journal of Dairy Science
DOI: 10.17632/ybdkr6mfxk
title: Data for: Import Processing and Trade Costs

description: Replication files for Carballo, Graziano, Schaur and Volpe Martincus (2024) "Import Processing and Trade Costs" for the publication in Journal of International Economics. 

Notes: Due to confidential agreements, we cannot make available the data used in the article. The replication files that contain the details on how to apply to get access to the data used in the paper together with the codes are available here. See the "read me" file within the replication files for a detailed guideline.
DOI: 10.6084/m9.figshare.14446998.v1
title: Fulvene DC-FSSH

description: Decoherence corrected fewest-switches surface hopping dynamics of fulvene. <br><br>60 fs, 0.1 fs time step.<br>SA-2-CAS(6,6)/6-31G*<br>Dataset 1 (adjnac). Dynamics with nonadiabatic coupling vectors <b>h</b> with <b>h</b>-adjusted velocities after hopping.Dataset 2 (adjmom). Dynamics with nonadiabatic coupling vectors <b>h</b> with <b>p</b>-adjusted velocities after hopping.Dataset 3 (adjtdba). Dynamics with Time-dependent Baeck-An model.<br>
DOI: 10.6084/m9.figshare.26965510.v1
title: Data: Exploring spillover effects in the four shiiping markets: Evidence from asymmetric connectedness

description: This paper aims at assessing the extent of connectedness (integration) across the four shipping markets (freight, secondhand vessels, newbuilding, and scrap) for three different segments of the industry (bulkers, oil tankers, and LNG vessels). We use monthly data for the period 1990 to 2023. The innovation of our study is that we examine the asymmetric connectedness of the four shipping markets following Stopford’s (2009) shipping market integration theory. We find strong patterns of asymmetric integration across the four markets, with the spillover effects being higher at the tails of the conditional distribution. We corroborate prior literature, finding that the freight market is overall the strongest net spills provider and consequently the dominant market among the four shipping markets. The only exception is the freight market for LNG vessels, where the secondhand market becomes partially dominant, due to the RAP model (shipping paradox). The scrap market is proven to be a net spills provider, while the secondhand and newbuilding markets appear to be interconnected, with the former acting as a net transmitter to the latter. Finally, our dynamic analysis provides evidence that the shipping market integration is affected by spillover effects from exogenous shocks arising from the pandemic, the war in Ukraine and the related government interventions to counterbalance the adverse implications for economies globally. Our findings contribute to the decision-making process in both ship and asset management.
DOI: 10.6084/m9.figshare.28553306.v1
title: SUPPLEMENTAL MATERIAL AmJPhysioEndo_Crosstalk foie Cancer V3.docx

description: <b>Primers for qPCR</b>
DOI: 10.17632/bv9cpw7tyn
title: Prioritising Sustainable Development Goals, characterising interactions, and identifying solutions for local sustainability

description: This data set contains evidence and literature on interactions among the 29 selected targets of priority Sustainable Development Goals (SDGs) for the Goulburn-Murray. This table (i.e., Table C.3.xlsx) summarises: (i) the amount of evidence for each interaction, (ii) robustness of the evidence for each interaction (summary terms: ‘limited’, ‘medium’ or ‘robust’), (iii) scores assigned with the Nilsson scoring methodology (Nilsson et al. 2016), (iv) level of confidence in assigned scores derived from authors’ judgement (summary terms: ‘low’, ‘medium’ or ‘high’). As an example, target 2.3 pertains to doubling agricultural productivity and target 6.3 relates to improving water quality, hence pollution resulting from unsustainable agriculture can counteract (−2 scoring) reductions in water pollution and the protection of water and related ecosystems. Because multiple documents discussed this interaction, confidence in the score was high. Achieving target 6.3 (water quality) and target 6.6 (protecting and restoring water-related ecosystems) was expected to lead to co-benefits (+2, reinforcing). Due to the number of documents mentioning this interaction, our confidence in the score was high. Also, in this table for some targets that are conceptually overlapping and may have the same evidence, therefore the first two columns can refer to multiple targets. 
Also, this data set contains coded statements too (Coded statements of all SDGs.pdf) . We prioritised SDGs and targets for the region by performing a computer-aided review of the literature. We assessed relevant literature with the software package NVivo Pro 12. We identified statements related to each SDG, then coded that content manually by assigning statements to relevant SDGs. As a first stage, we searched abstracts to find statements relevant to each of the 17 SDGs. Some statements were only associated with one SDG, while others were related to multiple SDGs. These coded statements were extracted from NVivo Pro 12.
DOI: 10.17632/wbkc2cp6sn
title: Data for: Interaction and Quadratic Effects in Probit Model with Endogenous Regressors
DOI: 10.6084/m9.figshare.1005036.v1
title: Sequence read and assembly datasets available in OADB.

description: Sequence read and assembly datasets available in OADB.
DOI: 10.6084/m9.figshare.7928927.v1
title: gVCF_HG02283

description: 1000 Genomes gVCF mapped to hs37d5 for HG02283. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17632/ybt96z496k
title: Data for "Hydro-mechanical behaviour of high-density bentonite pellet on partial hydration"

description: Compression test results: pellet modulus, pellet strength and maximal displacement for axial and radial directions (Fig. 8 and Fig 9. in article).
DOI: 10.6084/m9.figshare.13491606.v1
title: Data S22-24

description: EEG Data
DOI: 10.6084/m9.figshare.8976602.v1
title: Supplementary Material for: Identifying Perceptions and Preferences of the General Public Concerning Universal Screening of Children for Familial Hypercholesterolaemia

description: <b><i>Background/Aims:</i></b> Familial hypercholesterolaemia (FH) is a common genetic disorder that, if untreated, predisposes individuals to premature coronary heart disease. As most individuals with FH remain undiagnosed, new approaches to detection are needed and should be considered a priority in public health genomics. Universal screening of children for FH has been proposed, and this study explores public perspectives on the acceptability of this approach. <b><i>Methods:</i></b> A one-day deliberative public forum was held in Perth, WA, Australia. Thirty randomly selected individuals were recruited, with self-reported sociodemographic characteristics used to obtain discursive representation. Participants were presented with information from a variety of perspectives and asked to discuss the information provided to identify points of consensus and disagreement. The data collected were analysed using thematic analysis. <b><i>Results:</i></b> Of the 17 participants at the forum, 16 deemed universal screening of children for FH to be acceptable. Fifteen of these 16 believed this was best performed at the time of an immunisation. Participants proposed a number of conditions that should be met to reduce the likelihood of unintended harm resulting from the screening process. <b><i>Discussion/Conclusion:</i></b> The outcomes of the forum suggest that establishing a universal screening programme for FH in childhood is acceptable to the general public in WA.
DOI: 10.17632/byxkg9z6jp
title: GIS-based geospatial tools for estimating the magnetic anomaly depth of hydrothermal mineral deposits using inverse distance weights method

description: The data used in this study consist of high-resolution airborne magnetic datasets for solid mineral exploration acquired across the Nigerian nationwide Terrains by the two Canadian firms awarded the contracts (a.g., Fugro Airborne Survey Services, and Patterson Grant and Watson), by the Nigerian Geological Survey Agency (NGSA). The Canadian firms had obtained the airborne magnetic data between 2003 and 2009, approximately along the NW–SE flight lines that were positioned at 90 degrees to the most significant narrow geological strike in the areas covered. Aircraft was flown at typical spaced of about half kilometers intervals to acquire the data, with a 2 km tie-line spacing along the northeast-southwest (NE-SW) directions at 80 m nominal flight elevation. The magnetometer settings were set at 0.1 s intervals to record the data. The combination of the nominal flight height—that was set exceptionally close to the ground surface using narrow line spacing—and the extremely small recording time gaps, helped to achieved a higher resolution of the magnetic anomalies than the general high-altitude airborne magnetic surveys. Prior to the data distribution by the Nigerian Geological Survey Agency, (NGSA) to the interested users, Fugro Airborne Surveys Company preprocessed the essential magnetic data corrections: the geomagnetic gradient was removed from the data using the existing model with the International Geomagnetic Reference Field (IGRF), January 2005 version, as specified in the World Geodetic System 1984 ellipsoid. The Universal Transverse Mercator (UTM) coordinate system was used to project the airborne magnetic data. The airborne magnetic survey data presented in this study covered the Omu-Aran Schist belt zone in parts of the Nigerian South-western Precambrian basement complex (NSPBC), with moderately shallow overburden lithologies.
DOI: 10.17632/d4rjyvdthh
title: Soils and Paleosol Carbon Isotope Dataset

description: Soil and paleosol carbon isotope data
DOI: 10.6084/m9.figshare.12602159.v1
title: Selected Thresholds

description: The selected thresholds for each ADR
DOI: 10.6084/m9.figshare.21739738.v1
title: Ectoine gel transdermal formulation as a novel therapeutic approach in melanoma using 3D printed microneedles

description: A 7%w/w ectoine formula, from natural source, is formulated to reduce melanomagenesis, enhance penetration by 3D printed microneedles (MNs), with specified length, diameter and tip to ensure painless effect. Ectoine gel formulations were prepared using Carbopol 940 and Pluronic (F127). The effect of the polymers on pH, viscosity, spreadability, and the <i>in vitro</i>, <i>ex vivo</i> release profiles was obtained. The physiochemical investigation showed uniform gel formulations. The formulations’ <i>in vitro</i> and <i>ex vivo</i> drug release displayed a controllable drug release pattern, reaching 63.7–96% and 73–94.7% after 24 h. The permeation study of the <i>in vitro</i> and <i>ex vivo</i> release revealed that the drug release from gels followed diffusion mechanism. The selected formula was used, 3D printed MN array was applied to treat melanoma. Male rats were used for induction of melanoma using 0.5% of 7,12-dimethylbenz[a]anthracene three times weekly for 12 weeks, histopathology was applied to ensure development of carcinoma then rats were treated using the selected formula. Following treatment for continuous 6 weeks, histopathology showed a change in anatomy of skin, which started to return to its normal structure. The anti-melanogenesis activity of optimum formula of ectoine gel, enhanced by 3D printed MN, was found to be effective in reducing the severity of skin cancer reinforcing the efficacy of the promising treatment.
DOI: 10.6084/m9.figshare.28023143.v1
title: Raw data for FT-ICR MS spectrometry

description: The integration of oxidation and membrane technologies demonstrates significant potential in shale gas wastewater (SGW) treatment. However, the molecular-level transformation mechanisms of the complex dissolved organic matter (DOM) in SGW during this coupled process remain unclear. This study systematically assessed the performance of UV/H<sub>2</sub>O<sub>2</sub>-ultrafiltration (UF)-reverse osmosis (RO) combined process in removing contaminations from SGW and used Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) to elucidate the transformation characteristics and mechanisms of DOM during treatment.
DOI: 10.17632/55hzsxrv7y
title: River and Ocean Water Quality in Bali, Indonesia

description: Various water quality parameters in three rivers and ocean water around Bali, Indonesia. Parameters tested include salinity, pH, phosphates, and nitrates. Land use areas and percentage of total areas in a five km buffer zone around three rivers in Bali, Indonesia.
DOI: 10.17632/79grjj6brf
title: Ziziphus spina-christi leaves as a biomonitoring tool in Doha, Qatar.

description: The leaves of Ziziphus spina-christi were evaluated as a bioindicator for air pollution. The analysis concentrated on the increased metal concentrations present on the leaf surface. The dust accumulated on the leaves of Ziziphus spina-christi was analyzed for various elements, including aluminum (Al), barium (Ba), cadmium (Cd), chromium (Cr), copper (Cu), calcium (Ca), iron (Fe), potassium (K), magnesium (Mg), manganese (Mn), lead (Pb), and zinc (Zn), utilizing Inductively Coupled Plasma Optical Emission Spectrometry (ICP-OES). ArcGIS facilitated the mapping of the spatial distribution of metal concentrations.
DOI: 10.6084/m9.figshare.19187522.v2
title: Data for facilitation and inhibition effects of the anodal and cathodal tDCSs over the areas MT+ on the flash-lag effect

description: Supplement data. This data is related to Wang et. al, 2022.Every dataset includes pre-and post-test PSE and JND of three groups (anodal, cathodal, and sham).
DOI: 10.6084/m9.figshare.29038457.v1
title: Exploring DeepSeek Adoption Through UTAUT2: A Comparative Study of India, Pakistan, and Bangladesh

description: The dataset you're referring to is structured to analyze AI adoption using the <b>UTAUT2 model</b>, specifically within the context of DeepSeek adoption in <b>India, Pakistan, and Bangladesh</b>.<b>Data Overview:</b><b>Scope:</b> The study covers South Asian countries to provide comparative insights into adoption behavior.<b>Sample Size:</b> Includes responses from <b>Bangladesh</b>, along with India and Pakistan, ensuring a balanced perspective.<b>Variables:</b> Constructs from UTAUT2—such as <b>performance expectancy, effort expectancy, social influence</b>, and the newly introduced <b>Geopolitical Concern</b>—are assessed.<b>Analysis Methodology:</b> <b>Structural Equation Modeling (SEM-PLS)</b> is used to test the proposed hypotheses and validate the extended model.
DOI: 10.17632/rydffkb7rx
title: Data for: RTransferEntropy: Measuring information flow between time series with effective transfer entropy in R

description: The dataset contains stocks data used in the examples.
DOI: 10.6084/m9.figshare.25877302.v1
title: Dataset for "The two fundamental shapes of sleep heart rate dynamics and their connection to mental health in college students"

description: This is the dataset used for the paper "The two fundamental shapes of sleep heart rate dynamics and their connection to mental health in college students".<br><b>heartrate_ts_data.csv</b>Data used for the clustering of heart rate time series. Each row represents a heart rate time series from a participant for a given night.Columns:heart_rate_ts: raw heart rate time seriesheart_rate_paa_n=30: PAA-processed heart rate time series used for clusteringmode_cluster: most common cluster found after 30 runsAll other columns are given in Table S2 in the Supplementary Material.<br><b>user_demog_hrcluster.csv</b>Data used to relate the demographic information of a participant to the cluster their heart rate time series belong to.Columns:reg_user_id: participant IDweeknum: week number (note that PSS and GAD were gathered weekly)dayofweek: 0-Monday, 6-Sundaymode_cluster: the cluster the HR time series belongs topss: PSSgad: GADOther column labels are defined in Table S1 of the Supplementary Material.